BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780698|ref|YP_003065111.1| D-alanyl-D-alanine
carboxypeptidase 1 penicillin-binding protein [Candidatus Liberibacter
asiaticus str. psy62]
         (336 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780698|ref|YP_003065111.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
           [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040375|gb|ACT57171.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 336

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/336 (100%), Positives = 336/336 (100%)

Query: 1   MLQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID 60
           MLQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID
Sbjct: 1   MLQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID 60

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
           VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL
Sbjct: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS
Sbjct: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI 240
           GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI
Sbjct: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI 240

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR
Sbjct: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300

Query: 301 KDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
           KDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ
Sbjct: 301 KDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336


>gi|315121863|ref|YP_004062352.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
           [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495265|gb|ADR51864.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
           [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 357

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/330 (69%), Positives = 266/330 (80%), Gaps = 3/330 (0%)

Query: 1   MLQQKIQSSAKKTFLTYP--YGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIV 58
           MLQQ  +   KK FL Y   Y S  IQ +++ + KIL L II+ SMA + HAK +YSSIV
Sbjct: 1   MLQQNTKYLEKKQFLEYVSVYRSFIIQESLRSLWKILLLCIILTSMALKSHAKLEYSSIV 60

Query: 59  IDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID+ N  +  GFKQD+ RYPASLTKMMTLYIIFE+LQSKK+HLNT+IPVSKTA  Q PSK
Sbjct: 61  IDLLNDKRTNGFKQDKLRYPASLTKMMTLYIIFEHLQSKKMHLNTKIPVSKTATIQPPSK 120

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           LYLKE T+FT EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK +GM +T YK
Sbjct: 121 LYLKENTFFTVEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKSLGMNHTTYK 180

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNI 237
           NASGLHDKNQ TTARDQAILGI +RKNFPQYYKYFSIRKF+YRN+II NHNKL+NK+H I
Sbjct: 181 NASGLHDKNQKTTARDQAILGITIRKNFPQYYKYFSIRKFQYRNKIILNHNKLINKIHGI 240

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQ 297
           DGIKTGYTR+SGFNIV SL+ +++ I+AVVMGMPT Q+RDQKALELI SFL  K  KH+ 
Sbjct: 241 DGIKTGYTRDSGFNIVASLQNENNSIIAVVMGMPTCQKRDQKALELINSFLNTKKTKHKP 300

Query: 298 THRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
             +  NL+ +   K+L+ +K+K +  Q  K
Sbjct: 301 IWKSGNLTFSPTMKALITEKIKDSNQQLPK 330


>gi|222148621|ref|YP_002549578.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
           [Agrobacterium vitis S4]
 gi|221735607|gb|ACM36570.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
           [Agrobacterium vitis S4]
          Length = 484

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 120/243 (49%), Positives = 173/243 (71%), Gaps = 1/243 (0%)

Query: 53  KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +Y+ IV+DVN  + +     D  RYPASLTKMMTLY++FE L+  ++ LN+ +PVS  AA
Sbjct: 42  RYADIVVDVNNGKVLRATDADSLRYPASLTKMMTLYLVFEALEKGRIRLNSSVPVSAHAA 101

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++ PSKL L+    FT EQGI AL+TRSAND +TAFGE++ GSE +FA +M++KA+ +GM
Sbjct: 102 SEPPSKLGLRPGGSFTVEQGIQALVTRSANDAATAFGEYLGGSEARFAQMMTSKARALGM 161

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
             T Y+NA+GL +  Q+TTARDQA LG+ LR++FPQYY YFS R F Y  ++I NHN+L+
Sbjct: 162 SRTTYRNANGLPNSGQMTTARDQARLGMALRQHFPQYYAYFSTRSFTYGRQVIGNHNRLI 221

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
             +  +DGIKTG+T  SGFN+VTSL+     +V VV+G  +   RD +  +L+ +++ + 
Sbjct: 222 GSVRGVDGIKTGFTNASGFNLVTSLQIDGKSVVGVVLGGASGAARDNQMRKLMATYVPEA 281

Query: 292 TLK 294
           + +
Sbjct: 282 SRR 284


>gi|150396261|ref|YP_001326728.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae
           WSM419]
 gi|150027776|gb|ABR59893.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae
           WSM419]
          Length = 494

 Score =  265 bits (678), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 133/288 (46%), Positives = 190/288 (65%), Gaps = 12/288 (4%)

Query: 3   QQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMI-SMASELHAKPKYSSIVIDV 61
           Q  I S AK+     PYG+I      +++G+I    +I++ ++++   A  KY+ IV+D 
Sbjct: 10  QSVIPSLAKR-----PYGAIS-----EVVGRIFLAGLIVVLTLSAPALANSKYAGIVVDA 59

Query: 62  NKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
              ++  G   D+ RYPASLTKMMTLY+ FE L++ +++ +T +P SK A+ + PSKL +
Sbjct: 60  KTGKVLYGEDADQLRYPASLTKMMTLYLTFEALEAGRINKSTPVPFSKKASAEPPSKLGV 119

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           +     T EQ IL+L+TRSAND +TA  E + GSE++FA +M+NKA+ +GM  T Y+NA 
Sbjct: 120 RAGRSITVEQAILSLVTRSANDSATALAELLGGSEQRFARMMTNKARALGMTRTTYRNAH 179

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI 240
           GL +  Q TTARDQA LGI LR++FPQYY YFS R FR+  + I NHN+LL  +  +DGI
Sbjct: 180 GLPNSEQRTTARDQARLGIALRQHFPQYYDYFSTRSFRFGKQTIGNHNRLLGNVRGVDGI 239

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           KTGYTR SGFN+VTS +     IVAVVMG  +   RD +  +L+  ++
Sbjct: 240 KTGYTRASGFNLVTSAQLGGRSIVAVVMGGTSGGSRDAQMRKLVAKYM 287


>gi|307321507|ref|ZP_07600902.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           AK83]
 gi|306892814|gb|EFN23605.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           AK83]
          Length = 500

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 126/262 (48%), Positives = 177/262 (67%), Gaps = 2/262 (0%)

Query: 29  QLMGKILFLSIIMI-SMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTL 86
           ++MG+I    +I + + ++   A  KY+ IV+D    + + G   D+ RYPASLTKMMTL
Sbjct: 26  EVMGRIFLAGLIAVLTFSAPAFANSKYAGIVVDAKTGKVLYGEDADQLRYPASLTKMMTL 85

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y+ FE L++ ++  +T +P SK A+ + PSKL ++     T EQ IL+L+TRSAND +TA
Sbjct: 86  YLTFEALEAGRISKSTPVPFSKKASAEPPSKLGVRAGRSITVEQAILSLVTRSANDAATA 145

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
            GE + GSE++FA +M+NKA+ +GM  T Y+NA GL +  Q TTARDQA LGI LR++FP
Sbjct: 146 LGELLGGSEQRFARMMTNKARALGMTRTTYRNAHGLPNSEQRTTARDQARLGIALRQHFP 205

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           QYY YFS R FR+  + I NHN+LL  +  +DGIKTGYTR SGFN+VTS +     IVAV
Sbjct: 206 QYYDYFSTRSFRFGKQTIGNHNRLLGNVRGVDGIKTGYTRASGFNLVTSAQLDGRSIVAV 265

Query: 267 VMGMPTSQERDQKALELITSFL 288
           VMG  +   RD +  +L+  ++
Sbjct: 266 VMGGTSGGARDAQMRKLVAKYM 287


>gi|195970177|ref|NP_385517.2| hypothetical protein SMc00996 [Sinorhizobium meliloti 1021]
 gi|307309177|ref|ZP_07588848.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           BL225C]
 gi|187904171|emb|CAC45990.2| Penicillin-binding protein [Sinorhizobium meliloti 1021]
 gi|306900323|gb|EFN30939.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           BL225C]
          Length = 500

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 126/262 (48%), Positives = 177/262 (67%), Gaps = 2/262 (0%)

Query: 29  QLMGKILFLSIIMI-SMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTL 86
           ++MG+I    +I + + ++   A  KY+ IV+D    + + G   D+ RYPASLTKMMTL
Sbjct: 26  EVMGRIFLAGLIAVLTFSAPAFANSKYAGIVVDAKTGKVLYGEDADQLRYPASLTKMMTL 85

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y+ FE L++ ++  +T +P SK A+ + PSKL ++     T EQ IL+L+TRSAND +TA
Sbjct: 86  YLTFEALEAGRISKSTPVPFSKKASAEPPSKLGVRAGRSITVEQAILSLVTRSANDAATA 145

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
            GE + GSE++FA +M+NKA+ +GM  T Y+NA GL +  Q TTARDQA LGI LR++FP
Sbjct: 146 LGELLGGSEQRFARMMTNKARALGMTRTTYRNAHGLPNSEQRTTARDQARLGIALRQHFP 205

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           QYY YFS R FR+  + I NHN+LL  +  +DGIKTGYTR SGFN+VTS +     IVAV
Sbjct: 206 QYYDYFSTRSFRFGKQTIGNHNRLLGNVRGVDGIKTGYTRASGFNLVTSAQLDGRSIVAV 265

Query: 267 VMGMPTSQERDQKALELITSFL 288
           VMG  +   RD +  +L+  ++
Sbjct: 266 VMGGTSGGARDAQMRKLVAKYM 287


>gi|325292859|ref|YP_004278723.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3]
 gi|325060712|gb|ADY64403.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3]
          Length = 480

 Score =  262 bits (670), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 125/266 (46%), Positives = 176/266 (66%), Gaps = 1/266 (0%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTL 86
           ++ +   L  + I  +      A PKY+ IVID    ++  G   D  RYPASLTKMMTL
Sbjct: 2   VRFVALTLAAAFITATSVGTAQADPKYAGIVIDAKTGKVLYGEDPDGLRYPASLTKMMTL 61

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y+ FE L S ++ L++++PVS  AA + PSKL ++     T EQ ILAL+TRSAND++TA
Sbjct: 62  YLTFEALNSGRISLDSKVPVSANAAKEPPSKLGVRAGGSITVEQAILALVTRSANDMATA 121

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
            GE+I GSE +FA +M+ KA+ +GM  T Y+NA+GL +  Q+TTARDQA LGI LR++FP
Sbjct: 122 LGEYIGGSEDRFARMMTAKARALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQHFP 181

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           QYY YFS R F +  ++I NHN+L+  +  +DGIKTGYTR +G N+ TS +     IVAV
Sbjct: 182 QYYGYFSTRTFNFGKQVIGNHNRLVGTVRGVDGIKTGYTRAAGSNLATSAQLDGRSIVAV 241

Query: 267 VMGMPTSQERDQKALELITSFLEKKT 292
           V+G  +S  RD    +L+ ++L + +
Sbjct: 242 VLGGRSSAARDATMRKLVATYLPQAS 267


>gi|227821811|ref|YP_002825781.1| penicillin-binding protein [Sinorhizobium fredii NGR234]
 gi|227340810|gb|ACP25028.1| penicillin-binding protein [Sinorhizobium fredii NGR234]
          Length = 498

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 127/274 (46%), Positives = 181/274 (66%), Gaps = 9/274 (3%)

Query: 18  PYGSIYIQRNIQLMGKILFLSII--MISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEP 74
           P G I      + +G+++   ++  ++  A  L A  KY+ IV+D    ++  G   D+ 
Sbjct: 13  PLGGI-----AKAVGRVVLAGVVAGLVYSAPAL-ANSKYAGIVVDAKTGKVLYGEDADQL 66

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           RYPASLTKMMTLY+ FE L++ ++  +T +P SK AA + PSKL ++     T EQ +L+
Sbjct: 67  RYPASLTKMMTLYLTFEALEAGRISKSTPVPFSKKAAAEPPSKLGVRAGKAITVEQAVLS 126

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           L+TRSAND +TA GE + GSE++FA +M+NKA+ +GM  T Y+NA+GL +  Q TTARDQ
Sbjct: 127 LVTRSANDAATALGELLGGSEQRFARMMTNKARALGMTRTTYRNANGLPNTEQKTTARDQ 186

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
           A LG+ LR++FPQYY YFS R FR+  + I NHN+LL  +  +DGIKTGYTR SGFN+VT
Sbjct: 187 ARLGLALRQHFPQYYDYFSTRSFRFGKQTIGNHNRLLGNVRGVDGIKTGYTRASGFNLVT 246

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           S +     IVAVVMG  +   RD +  +L+  ++
Sbjct: 247 SAQLDGRSIVAVVMGGTSGGARDAQMRKLVAKYM 280


>gi|218663522|ref|ZP_03519452.1| probable serine-type D-Ala-D-Ala carboxypeptidase protein
           [Rhizobium etli IE4771]
          Length = 430

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 124/261 (47%), Positives = 178/261 (68%), Gaps = 3/261 (1%)

Query: 35  LFLSIIMI-SMASELH-AKPKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFE 91
           + L+++++ S+ +E   A PKY+ IV+D    N +     D  +YPASLTKMMTLY++FE
Sbjct: 1   MALTVVLVDSVNAEAKTANPKYAGIVVDAKTGNVLYSENADRLQYPASLTKMMTLYMVFE 60

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            L+  ++ L+T +P S  AA Q P+KL ++     T EQGIL L+T SAND STA GE +
Sbjct: 61  ALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDASTALGELL 120

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE +FA LM+ KA  +GM  T Y+NA+GL +  Q+TTARDQA LGI LR++FPQYY Y
Sbjct: 121 AGSEDRFAQLMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQHFPQYYGY 180

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           FS R F++ +R I +HN+L+  +  +DGIKTGYTR +GFN+V+S++     IV+VV+G  
Sbjct: 181 FSTRAFKFGSRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSIVSVVLGGT 240

Query: 272 TSQERDQKALELITSFLEKKT 292
           +   RD +   LI ++L K +
Sbjct: 241 SGAARDAQMRNLIATYLPKAS 261


>gi|116252287|ref|YP_768125.1| penicillin-binding protein/D-alanyl-D-alanine carboxypeptidase
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256935|emb|CAK08029.1| putative penicillin-binding protein/D-alanyl-D-alanine
           carboxypeptidase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 523

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 125/262 (47%), Positives = 173/262 (66%), Gaps = 4/262 (1%)

Query: 35  LFLSIIMISM--ASELHAKPKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFE 91
           + ++I+M+    A    A PKY+ IV+D    N +     D  +YPASLTKMMTLY+ FE
Sbjct: 33  VAVTIVMVDSVNADAEAANPKYAGIVVDAKTGNVLYSENADRLQYPASLTKMMTLYMTFE 92

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            L+  ++ L+T +P S  AA Q P+KL ++     T EQGIL L+T SAND +TA GE +
Sbjct: 93  ALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDAATALGEML 152

Query: 152 SG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
            G SE +FA LM+ KA  +GM  T Y+NA+GL +  Q+TTARDQA LGI LR++FPQYY 
Sbjct: 153 GGGSEDRFAQLMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQHFPQYYG 212

Query: 211 YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           YFS R F++ +R I +HN+L+  +  +DGIKTGYTR +GFN+V+S++     IV VVMG 
Sbjct: 213 YFSTRAFKFGSRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSIVGVVMGG 272

Query: 271 PTSQERDQKALELITSFLEKKT 292
            ++  RD +   LI S+L K +
Sbjct: 273 ASTPARDAQMRNLIASYLPKAS 294


>gi|159184788|ref|NP_354511.2| penicillin-binding protein [Agrobacterium tumefaciens str. C58]
 gi|159140076|gb|AAK87296.2| penicillin-binding protein [Agrobacterium tumefaciens str. C58]
          Length = 499

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 123/266 (46%), Positives = 174/266 (65%), Gaps = 1/266 (0%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTL 86
           ++ +   L  + I  +      A PKY+ IVID    ++  G   D  RYPASLTKMMTL
Sbjct: 26  VRFVALTLAAAFIAATSVQTAKADPKYAGIVIDAKSGKVLYGEDPDGLRYPASLTKMMTL 85

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y+ FE L S ++ L++++ VS  AA + PSKL ++     T EQ ILAL+TRSAND++TA
Sbjct: 86  YLTFEALNSGRISLDSRVTVSANAAKEPPSKLGVRAGGSVTVEQAILALVTRSANDMATA 145

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
            GE + GSE +FA +M+ KA+ +GM  T Y+NA+GL +  Q+TTARDQA LGI LR++FP
Sbjct: 146 LGEHLGGSEDRFARMMTAKARALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQHFP 205

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           QYY YFS R F +  ++I NHN+L+  +  +DGIKTGYTR +G N+ TS +     IVAV
Sbjct: 206 QYYGYFSTRTFNFGKQVIGNHNRLVGTVKGVDGIKTGYTRAAGSNLATSAQLDGRSIVAV 265

Query: 267 VMGMPTSQERDQKALELITSFLEKKT 292
           V+G  +S  RD    +L+ ++L + +
Sbjct: 266 VLGGRSSAARDATMRKLVATYLPQAS 291


>gi|190891891|ref|YP_001978433.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli CIAT 652]
 gi|190697170|gb|ACE91255.1| probable serine-type D-Ala-D-Ala carboxypeptidase protein
           [Rhizobium etli CIAT 652]
          Length = 524

 Score =  253 bits (646), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 123/264 (46%), Positives = 175/264 (66%), Gaps = 5/264 (1%)

Query: 34  ILFLSIIMI---SMASELHAK-PKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYI 88
           IL +++ ++   S+ +E  A  PKY+ IV+D    N +     D  +YPASLTKMMTLY+
Sbjct: 30  ILSMAVTVVLVDSVNAEAEAANPKYAGIVVDAKTGNVLYSENADRLQYPASLTKMMTLYM 89

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            FE L+  ++ L+T +P S  AA Q P+KL ++     T EQGIL L+T SAND +TA G
Sbjct: 90  TFEALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDAATALG 149

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E + GSE +FA +M+ KA  +GM  T Y+NA+GL +  Q+TTARDQA LGI LR++FPQY
Sbjct: 150 EMLGGSEDRFAQMMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQHFPQY 209

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           Y YFS R F++  R I +HN+L+  +  +DGIKTGYTR +GFN+V+S++     IV+VV+
Sbjct: 210 YGYFSTRAFKFGTRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSIVSVVL 269

Query: 269 GMPTSQERDQKALELITSFLEKKT 292
           G  +   RD +   LI ++L K +
Sbjct: 270 GGTSGPARDAQMRNLIATYLPKAS 293


>gi|218513170|ref|ZP_03510010.1| probable serine-type D-Ala-D-Ala carboxypeptidase protein
           [Rhizobium etli 8C-3]
          Length = 325

 Score =  252 bits (643), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 121/261 (46%), Positives = 175/261 (67%), Gaps = 3/261 (1%)

Query: 35  LFLSIIMI-SMASELHAK-PKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFE 91
           + ++++++ S+ +E  A  PKY+ IV+D    N +     D  +YPASLTKMMTLY+ FE
Sbjct: 1   MAVTVVLVDSVNAEAEAANPKYAGIVVDAKTGNVLYSENADRLQYPASLTKMMTLYMTFE 60

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            L+  ++ L+T +P S  AA Q P+KL ++     T EQGIL L+T SAND +TA GE +
Sbjct: 61  ALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDAATALGEML 120

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            GSE +FA +M+ KA  +GM  T Y+NA+GL +  Q+TTARDQA LGI LR++FPQYY Y
Sbjct: 121 GGSEDRFAQMMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQHFPQYYGY 180

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           FS R F++  R I +HN+L+  +  +DGIKTGYTR +GFN+V+S++     IV+VV+G  
Sbjct: 181 FSTRAFKFGTRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSIVSVVLGGT 240

Query: 272 TSQERDQKALELITSFLEKKT 292
           +   RD +   LI ++L K +
Sbjct: 241 SGPARDAQMRNLIATYLPKAS 261


>gi|90419583|ref|ZP_01227493.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336520|gb|EAS50261.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 500

 Score =  252 bits (643), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 119/267 (44%), Positives = 175/267 (65%), Gaps = 1/267 (0%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLY 87
           +  G +   + +++S    + A  KY+  VID N  Q+    + DE RYPASLTKMMTLY
Sbjct: 25  RFAGVVAIGAGMLLSAVGHVEANDKYAGFVIDANNGQVLYNDRADEYRYPASLTKMMTLY 84

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + F+ L+S ++ ++ ++PVS  AA + PSK+ LK  +  T E+ + +L+T+SAND +   
Sbjct: 85  MTFDALKSGRISMSDKMPVSAYAAARPPSKIGLKAGSTLTVEEAVYSLVTKSANDAAVVL 144

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
           GEF +GSE  FA  M+ KA++IGM  T ++NA+GL D  Q TTARD A LGI LR++FP+
Sbjct: 145 GEFQAGSESAFAARMTAKARQIGMPKTTFRNANGLPDSEQKTTARDMATLGIALREHFPE 204

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           YYK FS R + +R R + NHN++L ++  +DGIKTGY   SGFN+VTS+      +VAVV
Sbjct: 205 YYKIFSTRSYSFRGRRLGNHNRVLGRVKGVDGIKTGYINASGFNLVTSIERDGKSLVAVV 264

Query: 268 MGMPTSQERDQKALELITSFLEKKTLK 294
           MG  + + RD   +EL+T +L K + +
Sbjct: 265 MGGRSGRSRDDHMVELLTRYLPKASTR 291


>gi|327189245|gb|EGE56423.1| putative serine-type D-Ala-D-Ala carboxypeptidase protein
           [Rhizobium etli CNPAF512]
          Length = 493

 Score =  251 bits (641), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 120/261 (45%), Positives = 174/261 (66%), Gaps = 3/261 (1%)

Query: 35  LFLSIIMI-SMASELHAK-PKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFE 91
           + ++++++ S+ +E  A  PKY+ IV+D    N +     D  +YPASLTKMMTLY+ FE
Sbjct: 1   MAVTVVLVDSVNAEAEAANPKYAGIVVDAKTGNVLYSENADRLQYPASLTKMMTLYMTFE 60

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            L+  ++ L+T +P S  AA Q P+KL ++     T EQGIL L+T SAND +TA GE +
Sbjct: 61  ALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDAATALGEML 120

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            GSE +F  +M+ KA  +GM  T Y+NA+GL +  Q+TTARDQA LGI LR++FPQYY Y
Sbjct: 121 GGSEDRFGQMMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQHFPQYYGY 180

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           FS R F++  R I +HN+L+  +  +DGIKTGYTR +GFN+V+S++     IV+VV+G  
Sbjct: 181 FSTRAFKFGTRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSIVSVVLGGT 240

Query: 272 TSQERDQKALELITSFLEKKT 292
           +   RD +   LI ++L K +
Sbjct: 241 SGPARDAQMRNLIATYLPKAS 261


>gi|86357827|ref|YP_469719.1| serine-type D-Ala-D-Ala carboxypeptidase protein [Rhizobium etli
           CFN 42]
 gi|86281929|gb|ABC90992.1| probable serine-type D-Ala-D-Ala carboxypeptidase protein
           [Rhizobium etli CFN 42]
          Length = 525

 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 122/264 (46%), Positives = 174/264 (65%), Gaps = 5/264 (1%)

Query: 34  ILFLSIIMI---SMASELHAK-PKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYI 88
           IL +++ ++   S+ +E  A   KY+ IV+D    N +     D  +YPASLTKMMTLY+
Sbjct: 30  ILSMTVTVVLVDSVNAEAEAANSKYAGIVVDAKTGNVLYSENADRLQYPASLTKMMTLYM 89

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            FE L+  ++ L+T +P S  AA Q P+KL ++     T EQGIL L+T SAND +TA G
Sbjct: 90  TFEALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDAATALG 149

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E + GSE +FA +M+ KA  +GM  T Y+NA+GL +  Q+TTARDQA LGI LR++FPQY
Sbjct: 150 EMLGGSEDRFAQMMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQHFPQY 209

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           Y YFS R F++  R I +HN+L+  +  +DGIKTGYTR +GFN+V+S++     IV+VV+
Sbjct: 210 YGYFSTRAFKFGTRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSIVSVVL 269

Query: 269 GMPTSQERDQKALELITSFLEKKT 292
           G  +   RD +   LI ++L K +
Sbjct: 270 GGASGPARDAQMRNLIATYLPKAS 293


>gi|241204780|ref|YP_002975876.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858670|gb|ACS56337.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 517

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 123/262 (46%), Positives = 175/262 (66%), Gaps = 4/262 (1%)

Query: 35  LFLSIIMI-SMASELHAK-PKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFE 91
           + ++I+M+ S+ ++  A   KY+ IV+D    N +     D  +YPASLTKMMTLY+ FE
Sbjct: 26  VAVTIVMVDSVNTDAEAANSKYAGIVVDAKTGNVLYSENADRLQYPASLTKMMTLYMTFE 85

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            L+  ++ L+T +P S  AA Q P+KL ++     T EQGIL L+T SAND +TA GE +
Sbjct: 86  ALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDAATALGEML 145

Query: 152 SG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
            G SE +FA LM+ KA  +GM  T Y+NA+GL +  Q+TTARDQA LGI LR++FPQYY 
Sbjct: 146 GGGSEDRFAQLMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQHFPQYYG 205

Query: 211 YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           YFS R F++ +R I +HN+L+  +  +DGIKTGYTR +GFN+V+S++     IV VV+G 
Sbjct: 206 YFSTRAFKFGSRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSIVGVVLGG 265

Query: 271 PTSQERDQKALELITSFLEKKT 292
            ++  RD +   LI S+L K +
Sbjct: 266 ASTPARDAQMRNLIASYLPKAS 287


>gi|209549453|ref|YP_002281370.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209535209|gb|ACI55144.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 517

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 121/262 (46%), Positives = 175/262 (66%), Gaps = 4/262 (1%)

Query: 35  LFLSIIMI-SMASELHAK-PKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFE 91
           + L+++++ S+++E  A   KY+ IV+D    N +     D  +YPASLTKMMT+Y+ FE
Sbjct: 26  VALTVVLVDSVSAEAEAANSKYAGIVVDAKTGNVLYSENADRLQYPASLTKMMTIYMTFE 85

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            L+  ++ L+T +P S  AA Q P+KL ++     T EQGIL L+T SAND +TA GE +
Sbjct: 86  ALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDAATALGEML 145

Query: 152 SG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
            G SE +FA LM+ KA  +GM  T Y+NA+GL +  Q+TTARDQA LGI LR++FPQYY 
Sbjct: 146 GGGSEDRFAQLMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQHFPQYYG 205

Query: 211 YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           YFS R F++  R I +HN+L+  +  +DGIKTGYTR +GFN+V+S++     IV VV+G 
Sbjct: 206 YFSTRAFKFGTRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSIVGVVLGG 265

Query: 271 PTSQERDQKALELITSFLEKKT 292
            ++  RD +   LI ++L K +
Sbjct: 266 ASTPARDAQMRNLIATYLPKAS 287


>gi|163760868|ref|ZP_02167947.1| hypothetical protein HPDFL43_06977 [Hoeflea phototrophica DFL-43]
 gi|162281912|gb|EDQ32204.1| hypothetical protein HPDFL43_06977 [Hoeflea phototrophica DFL-43]
          Length = 441

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 119/262 (45%), Positives = 171/262 (65%), Gaps = 1/262 (0%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEY 92
           + F  + M   +    A  KY+ IV+D    + +  +  D+ R+PASLTKMMTLY++FE 
Sbjct: 1   MAFAGLAMALASGAALANSKYAGIVVDAKTGKTLYAYNADQLRFPASLTKMMTLYMVFEA 60

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           L+ +K+ LNT+I  S  AA + P+KL +      T EQ I AL+T+SAND STA  E + 
Sbjct: 61  LEQRKIKLNTRIVFSANAAKEPPTKLGVGTGKSITVEQAIYALVTKSANDASTAVAEHLG 120

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           GSE KFA +M+ KA+ +GM  T ++NA GL +  Q+TTARD A LGI LR++FP+ YKYF
Sbjct: 121 GSEAKFARMMTAKARSLGMSRTTFRNAHGLPNSKQVTTARDMARLGIALREHFPRQYKYF 180

Query: 213 SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           + R F++    ++NHN+LL  +  +DGIKTGYTR SGFN+V+S+  ++  IVAVVMG  T
Sbjct: 181 ATRSFKFGKTRLSNHNRLLGTVRGVDGIKTGYTRASGFNLVSSVVDRNRSIVAVVMGGRT 240

Query: 273 SQERDQKALELITSFLEKKTLK 294
              R+ +  +LI  +L K + +
Sbjct: 241 GASRNAQMKKLIAGYLSKASTR 262


>gi|170740496|ref|YP_001769151.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp.
           4-46]
 gi|168194770|gb|ACA16717.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp.
           4-46]
          Length = 503

 Score =  242 bits (617), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 115/240 (47%), Positives = 160/240 (66%), Gaps = 1/240 (0%)

Query: 52  PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P ++++V+DV   + +    +D  R+PAS+TK+MTLY++FE L+  K+ L+T + +S  A
Sbjct: 46  PPFAAMVVDVKSGRVLHAVNEDALRHPASITKVMTLYLLFEQLERGKMSLDTPLEISANA 105

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A Q PSKL L+  +  T E+ I AL+T+SANDV+ A GE I+GSE  FA +M+ KA  +G
Sbjct: 106 ARQAPSKLGLRPGSTITVEEAIKALVTKSANDVACAIGENIAGSEGAFAEMMTRKAHALG 165

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M  T Y NASGL D +QITTARD  +L   ++  FP+YY+YF  R F +R R+I NHN L
Sbjct: 166 MSRTHYANASGLPDSDQITTARDLTVLARAIQDRFPRYYRYFQTRSFAFRGRVIGNHNHL 225

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L ++  +DGIKTGYTR+SGFN++TS R  D  IVAVV+G  +   RD     L+   L K
Sbjct: 226 LGRVEGVDGIKTGYTRDSGFNLMTSARLADRHIVAVVLGGKSVASRDAIMTRLVQGNLPK 285


>gi|163854196|ref|YP_001642239.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           extorquens PA1]
 gi|163665801|gb|ABY33168.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           extorquens PA1]
          Length = 494

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 117/279 (41%), Positives = 175/279 (62%), Gaps = 14/279 (5%)

Query: 34  ILFLSIIMISMASELHAK-------------PKYSSIVIDVNKNQ-MTGFKQDEPRYPAS 79
           +L  +  ++++A    AK             P Y+++V+DV   + +    +D  R+PAS
Sbjct: 18  LLLATSFLVAVADPAEAKRRGHARKAVSGYNPPYAAMVVDVKSGRTLHAVNEDALRHPAS 77

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MTLY++FE L+  +  L++ + +S  AA Q PSKL L+  +  T E+ I AL+T+S
Sbjct: 78  ITKVMTLYMLFEQLEKGRYDLDSPLSISANAAAQAPSKLGLRPGSTVTVEEAIKALVTKS 137

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           ANDV+ A GE I+GSE +FA +M+ KAK IGM  T Y NASGL D +QITTA D  +L  
Sbjct: 138 ANDVACAIGENIAGSEPRFAEMMTRKAKAIGMSRTHYANASGLPDPDQITTAHDLTLLAR 197

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            ++  FP+YY+YF  R F +R R I NHN+LL  +  +DGIKTGYTR+SGFN++T+ +  
Sbjct: 198 AIQDRFPRYYRYFQTRSFAFRGRTIGNHNRLLGNVEGVDGIKTGYTRDSGFNLMTAAKLG 257

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
           D  IVA+V+G  +   RD+   +L+ + L +     +QT
Sbjct: 258 DRQIVAIVLGGKSGASRDRIMADLVRANLPRAFAGSRQT 296


>gi|188584526|ref|YP_001927971.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi
           BJ001]
 gi|179348024|gb|ACB83436.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi
           BJ001]
          Length = 494

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 117/279 (41%), Positives = 175/279 (62%), Gaps = 14/279 (5%)

Query: 34  ILFLSIIMISMASELHAK-------------PKYSSIVIDVNKNQ-MTGFKQDEPRYPAS 79
           +L  +  ++++A    AK             P Y+++V+DV   + +    +D  R+PAS
Sbjct: 18  LLLATSFLVAVADPAEAKRRGHARKAVSGYNPPYAAMVVDVKSGRTLHAVNEDALRHPAS 77

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MTLY++FE L+  +  L++ + +S  AA Q PSKL L+  +  T E+ I AL+T+S
Sbjct: 78  ITKVMTLYMLFEQLEKGRYDLDSPLSISANAAAQAPSKLGLRPGSTVTVEEAIKALVTKS 137

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           ANDV+ A GE I+GSE +FA +M+ KAK +GM  T Y NASGL D +QITTA D  IL  
Sbjct: 138 ANDVACAIGENIAGSEPRFAEMMTRKAKALGMSRTHYANASGLPDPDQITTAHDLTILAR 197

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            ++  FP+YY+YF  R F +R R I NHN+LL  +  +DGIKTGYTR+SGFN++T+ +  
Sbjct: 198 AIQDRFPRYYRYFQTRSFAFRGRTIGNHNRLLGNVEGVDGIKTGYTRDSGFNLMTAAKLG 257

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
           D  IVA+V+G  +   RD+   +L+ + L +     +QT
Sbjct: 258 DRQIVAIVLGGKSGASRDRIMADLVRANLPRAYAGARQT 296


>gi|328543443|ref|YP_004303552.1| D-alanyl-D-alanine carboxypeptidase family [polymorphum gilvum
           SL003B-26A1]
 gi|326413187|gb|ADZ70250.1| D-alanyl-D-alanine carboxypeptidase family [Polymorphum gilvum
           SL003B-26A1]
          Length = 486

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 122/263 (46%), Positives = 165/263 (62%), Gaps = 1/263 (0%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYII 89
           + K L L  +  S+ S   A  KY+ IV+D    + +     DEPRYPASLTK+MTLY++
Sbjct: 13  IAKALLLIGLFASLPSIAQANAKYAGIVVDAKTGKTLYAASADEPRYPASLTKIMTLYVV 72

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           FE L++++L L+T + VS  AA Q PSK+ LK  +  + +  ILALIT+SANDV+    E
Sbjct: 73  FEELEARRLSLDTPLKVSAYAAGQPPSKIGLKPGSTISVKDAILALITKSANDVAVVVAE 132

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            I GSE +FA  M+  A++IGM  T ++N  GL +  Q TTARD A LG  +++ FP YY
Sbjct: 133 NIGGSEARFAERMTRTARQIGMTRTTFRNPHGLPNSGQRTTARDMAQLGRAIQERFPSYY 192

Query: 210 KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            YF  R F YR R   NHNKLL  +  +DGIKTG+ R SGFN+VTS+      +VAVVMG
Sbjct: 193 GYFKTRSFAYRGRTYGNHNKLLGHVAGVDGIKTGFIRASGFNLVTSVNRDGRHVVAVVMG 252

Query: 270 MPTSQERDQKALELITSFLEKKT 292
             T + RD + ++LI   L K +
Sbjct: 253 GQTGRSRDAQMVKLINEHLPKAS 275


>gi|153009349|ref|YP_001370564.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi
           ATCC 49188]
 gi|151561237|gb|ABS14735.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi
           ATCC 49188]
          Length = 469

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 120/264 (45%), Positives = 173/264 (65%), Gaps = 6/264 (2%)

Query: 35  LFLSIIM-ISMAS----ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYI 88
           L L+++   S AS     + A  +Y++IVID N  + +     D  RYPASLTKMMTLY+
Sbjct: 20  LLLAVVTGCSTASTTIPAIAASDRYAAIVIDANTGKTLFASNADAQRYPASLTKMMTLYM 79

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           +FE +Q+ +++ +T+IPVS  AA + P+K+  +       E   LA+IT+SANDV+TA G
Sbjct: 80  LFEAMQAGRMNKDTRIPVSAYAAARPPTKIGFRSGQSIRAEDAALAMITKSANDVATAVG 139

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E+I GSE++FA +M+ KA+++GM+NT ++NASGL +  Q TTARD AIL I LR++FP  
Sbjct: 140 EYIGGSEERFAQMMTAKARRLGMRNTTFRNASGLPNMAQHTTARDMAILSIALRQHFPNE 199

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           + YFS R F +R + I  HN+LL ++  +DGIKTGYT  SG+N+ +S+      +VAVVM
Sbjct: 200 FSYFSRRSFVFRGQTINGHNRLLGRVEGVDGIKTGYTNASGYNLASSVSLDGRRLVAVVM 259

Query: 269 GMPTSQERDQKALELITSFLEKKT 292
           G  T   RD    +LI  +L   T
Sbjct: 260 GGNTGASRDAHMTQLIRKYLPMAT 283


>gi|220920397|ref|YP_002495698.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Methylobacterium nodulans ORS 2060]
 gi|219945003|gb|ACL55395.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Methylobacterium nodulans ORS 2060]
          Length = 498

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 115/240 (47%), Positives = 160/240 (66%), Gaps = 1/240 (0%)

Query: 52  PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P ++++V+DV   + +    +D  R+PAS+TK+MTLY++FE L+  ++ L+T + +S  A
Sbjct: 46  PPFAAMVVDVKSGRILHAVNEDALRHPASITKVMTLYLLFEQLERGRMSLDTPLEISANA 105

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A Q PSKL L+     T E+ I AL+T+SANDV+ A GE I+GSE  FA +M+ KA  +G
Sbjct: 106 ARQAPSKLGLRPGATITVEEAIKALVTKSANDVACAIGENIAGSEGAFAEMMTRKAHALG 165

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M  T Y NASGL D +QITTARD  IL   ++  FP+YY+YF  R F +R R+I NHN L
Sbjct: 166 MTRTHYANASGLPDSDQITTARDLTILARAIQDRFPRYYRYFQTRSFAFRGRVIGNHNHL 225

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L ++  +DGIKTGYTR+SGFN++TS R  D  IVAVV+G  +   RD     L+ + L K
Sbjct: 226 LGRVEGVDGIKTGYTRDSGFNLMTSARINDRHIVAVVLGGKSVASRDAIMTRLVEANLPK 285


>gi|218533141|ref|YP_002423957.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           chloromethanicum CM4]
 gi|218525444|gb|ACK86029.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           chloromethanicum CM4]
          Length = 494

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 116/279 (41%), Positives = 175/279 (62%), Gaps = 14/279 (5%)

Query: 34  ILFLSIIMISMASELHAK-------------PKYSSIVIDVNKNQ-MTGFKQDEPRYPAS 79
           +L  +  ++++A    AK             P Y+++V+DV   + +    +D  R+PAS
Sbjct: 18  LLLATSFLVAVADPAEAKRRGHARKAVSGYNPPYAAMVVDVKSGRTLHAVNEDALRHPAS 77

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MTLY++FE L+  +  L++ + +S  AA Q PSKL L+  +  T E+ I AL+T+S
Sbjct: 78  ITKVMTLYMLFEQLEKGRYDLDSPLSISANAAAQAPSKLGLRPGSTVTVEEAIKALVTKS 137

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           ANDV+ A GE I+GSE +FA +M+ KAK +GM  T Y NASGL D +QITTA D  +L  
Sbjct: 138 ANDVACAIGENIAGSEPRFAEMMTRKAKALGMSRTHYANASGLPDPDQITTAHDLTLLAR 197

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            ++  FP+YY+YF  R F +R R I NHN+LL  +  +DGIKTGYTR+SGFN++T+ +  
Sbjct: 198 AIQDRFPRYYRYFQTRSFAFRGRTIGNHNRLLGNVEGVDGIKTGYTRDSGFNLMTAAKLG 257

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
           D  IVA+V+G  +   RD+   +L+ + L +     +QT
Sbjct: 258 DRQIVAIVLGGKSGASRDRIMADLVRANLPRAFAGSRQT 296


>gi|240141656|ref|YP_002966136.1| putative D-alanyl-D-alanine carboxypeptidase [Methylobacterium
           extorquens AM1]
 gi|240011633|gb|ACS42859.1| putative D-alanyl-D-alanine carboxypeptidase [Methylobacterium
           extorquens AM1]
          Length = 494

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 116/279 (41%), Positives = 175/279 (62%), Gaps = 14/279 (5%)

Query: 34  ILFLSIIMISMASELHAK-------------PKYSSIVIDVNKNQ-MTGFKQDEPRYPAS 79
           +L  +  ++++A    AK             P Y+++V+DV   + +    +D  R+PAS
Sbjct: 18  LLLATSFLVAVADPAEAKRRGHARKAVSGYNPPYAAMVVDVKSGRTLHAVNEDALRHPAS 77

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MTLY++FE L+  +  L++ + +S  AA Q PSKL L+  +  T E+ I AL+T+S
Sbjct: 78  ITKVMTLYMLFEQLEKGRYDLDSPLSISANAAAQAPSKLGLRPGSTVTVEEAIKALVTKS 137

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           ANDV+ A GE I+GSE +FA +M+ KAK +GM  T Y NASGL D +QITTA D  +L  
Sbjct: 138 ANDVACAIGENIAGSEPRFAEMMTRKAKALGMSRTHYANASGLPDPDQITTAHDLTLLAR 197

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            ++  FP+YY+YF  R F +R R I NHN+LL  +  +DGIKTGYTR+SGFN++T+ +  
Sbjct: 198 AIQDRFPRYYRYFQTRSFAFRGRTIGNHNRLLGNVEGVDGIKTGYTRDSGFNLMTAAKLG 257

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
           D  IVA+V+G  +   RD+   +L+ + L +     +QT
Sbjct: 258 DRQIVAIVLGGKSGASRDRIMADLVRANLPRAFAGSRQT 296


>gi|114704888|ref|ZP_01437796.1| hypothetical protein FP2506_08126 [Fulvimarina pelagi HTCC2506]
 gi|114539673|gb|EAU42793.1| hypothetical protein FP2506_08126 [Fulvimarina pelagi HTCC2506]
          Length = 482

 Score =  239 bits (609), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 116/250 (46%), Positives = 164/250 (65%), Gaps = 1/250 (0%)

Query: 44  MASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           M  + +A  KY+  VID N  + +   + DE RYPASLTKMMTLY+ F+ L  K++ L  
Sbjct: 24  MPMQANANAKYAGFVIDANNGKVLYEDRADEYRYPASLTKMMTLYLTFDALSKKRISLTD 83

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           ++PVS+ AA + P+K+ +        E+ I +L+T+SAND S    E+++GSE  FA +M
Sbjct: 84  KMPVSRYAAGRPPTKIGVPAGKTLQVEEAIYSLVTKSANDASVTLAEYLAGSESSFAEMM 143

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
           +  A K+GM  T YKNA+GL D  Q TTARDQA LGI LR++FPQYYKYFS R + +R R
Sbjct: 144 TRTAHKLGMTKTTYKNANGLPDSGQRTTARDQAKLGIALREHFPQYYKYFSTRSYSFRGR 203

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + NHN++L +M  +DGIKTGY   SGFN+V+S++     +VAVVMG  + + RD   ++
Sbjct: 204 RLGNHNRVLGRMTGVDGIKTGYINASGFNLVSSIKRDGKSLVAVVMGGRSGRSRDNHMVD 263

Query: 283 LITSFLEKKT 292
           L+   L K +
Sbjct: 264 LLQRTLPKAS 273


>gi|254564164|ref|YP_003071259.1| D-alanyl-D-alanine carboxypeptidase [Methylobacterium extorquens
           DM4]
 gi|254271442|emb|CAX27457.1| putative D-alanyl-D-alanine carboxypeptidase [Methylobacterium
           extorquens DM4]
          Length = 494

 Score =  239 bits (609), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 116/279 (41%), Positives = 175/279 (62%), Gaps = 14/279 (5%)

Query: 34  ILFLSIIMISMASELHAK-------------PKYSSIVIDVNKNQ-MTGFKQDEPRYPAS 79
           +L  +  ++++A    AK             P Y+++V+DV   + +    +D  R+PAS
Sbjct: 18  LLLATSFLVAVADPAEAKRRGHARKAVSGYNPPYAAMVVDVKSGRTLHAVNEDALRHPAS 77

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MTLY++FE L+  +  L++ + +S  AA Q PSKL L+  +  T E+ I AL+T+S
Sbjct: 78  ITKVMTLYMLFEQLEKGRYDLDSPLSISANAAAQAPSKLGLRPGSTVTVEEAIKALVTKS 137

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           ANDV+ A GE I+GSE +FA +M+ KAK +GM  T Y NASGL D +QITTA D  +L  
Sbjct: 138 ANDVACAIGENIAGSEPRFAEMMTRKAKALGMSRTHYANASGLPDPDQITTAYDLTLLAR 197

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            ++  FP+YY+YF  R F +R R I NHN+LL  +  +DGIKTGYTR+SGFN++T+ +  
Sbjct: 198 AIQDRFPRYYRYFQTRSFAFRGRTIGNHNRLLGNVEGVDGIKTGYTRDSGFNLMTAAKLG 257

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
           D  IVA+V+G  +   RD+   +L+ + L +     +QT
Sbjct: 258 DRQIVAIVLGGKSGASRDRIMADLVRANLPRAFAGSRQT 296


>gi|239832060|ref|ZP_04680389.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium
           LMG 3301]
 gi|239824327|gb|EEQ95895.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium
           LMG 3301]
          Length = 469

 Score =  239 bits (609), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 119/264 (45%), Positives = 172/264 (65%), Gaps = 6/264 (2%)

Query: 35  LFLSIIM-ISMAS----ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYI 88
           L L+++   S AS     + A  +Y++IVID N  + +     D  RYPASLTKMMTLY+
Sbjct: 20  LLLAVVTGCSTASTTIPAIAAGDRYAAIVIDANTGKTLFASNADAQRYPASLTKMMTLYM 79

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           +FE +Q+ ++  +T+IPVS  AA + P+K+  +       E   LA+IT+SANDV+TA G
Sbjct: 80  LFEAMQAGRMSKDTRIPVSAYAAARPPTKIGFRPGQSIRAEDAALAMITKSANDVATAVG 139

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E++ GSE++FA +M+ KA+++GM+NT ++NASGL +  Q TTARD AIL I LR++FP  
Sbjct: 140 EYLGGSEERFAQMMTAKARRLGMRNTTFRNASGLPNMAQHTTARDMAILSIALRQHFPNE 199

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           + YFS R F +R + I  HN+LL ++  +DGIKTGYT  SG+N+ +S+      +VAVVM
Sbjct: 200 FSYFSRRSFVFRGQTINGHNRLLGRVEGVDGIKTGYTNASGYNLASSVSLDGRRLVAVVM 259

Query: 269 GMPTSQERDQKALELITSFLEKKT 292
           G  T   RD    +LI  +L   T
Sbjct: 260 GGNTGASRDAHMAQLIRKYLPMAT 283


>gi|146341457|ref|YP_001206505.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp.
           ORS278]
 gi|146194263|emb|CAL78285.1| putative D-alanyl-D-alanine carboxypeptidase (Peptidase
           S11)(DD-carboxypeptidase) [Bradyrhizobium sp. ORS278]
          Length = 586

 Score =  238 bits (608), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 120/245 (48%), Positives = 156/245 (63%), Gaps = 1/245 (0%)

Query: 52  PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P ++SIV+D N    +T    D  R+PASLTK+MTLY++FE L S K+ L+T++PVS+ A
Sbjct: 56  PAFASIVVDGNSGATLTATNPDALRHPASLTKIMTLYLLFERLDSGKMKLDTEMPVSEHA 115

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           + Q+P+KL L+       E  I  L+TRSAND +    E I G E +FA +M+ KA+ +G
Sbjct: 116 SEQSPTKLGLRPGQTIRVEDAIKGLVTRSANDAAVVIAEAIGGDEDEFAKMMTRKARSLG 175

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M  T Y NASGL    QITTARDQ+ILG  ++  FP+YY+YFS   F YR + I NHN L
Sbjct: 176 MSRTTYVNASGLPADEQITTARDQSILGRAIQDRFPRYYRYFSTVVFNYRGQSIRNHNHL 235

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L  +  IDGIKTGYTR SGFNIVTSLR  +  +V VV+G  +   RD     L+   LEK
Sbjct: 236 LGNVEGIDGIKTGYTRASGFNIVTSLRRGNRHLVGVVLGGRSGGSRDAIMRNLLAENLEK 295

Query: 291 KTLKH 295
              K 
Sbjct: 296 GATKR 300


>gi|222086064|ref|YP_002544596.1| serine-type D-Ala-D-Ala carboxypeptidase protein [Agrobacterium
           radiobacter K84]
 gi|221723512|gb|ACM26668.1| serine-type D-Ala-D-Ala carboxypeptidase protein [Agrobacterium
           radiobacter K84]
          Length = 504

 Score =  238 bits (608), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 121/274 (44%), Positives = 169/274 (61%), Gaps = 7/274 (2%)

Query: 29  QLMGKILF------LSIIMISMASELHAKPKYSSIVIDVN-KNQMTGFKQDEPRYPASLT 81
           + + K+LF       +I M   AS      KY+ IVID N  N +     D   YPASLT
Sbjct: 22  KFLAKMLFGLAVSTATITMTVDASYAAGGSKYAGIVIDANTGNVLYSENADTLHYPASLT 81

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           KMMT+Y+ FE L+S ++ L+T +  SK AA Q P+KL +      T  + IL ++T+SAN
Sbjct: 82  KMMTVYLTFEALESGRITLDTPVVFSKNAAMQAPTKLGIGTGRSVTVREAILGIVTKSAN 141

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D + A GE + GSE  FA +M++KA+ +GM  T Y+N +GL +  Q+TTARDQA LGI L
Sbjct: 142 DAAMALGEMLGGSEDNFARMMNDKARMLGMTRTTYRNPNGLPNTAQMTTARDQARLGIAL 201

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           R++FPQYY  FS   FR  NR+I  HN LL  +  +DGIKTGYTR +G+N+ TS++    
Sbjct: 202 REHFPQYYGLFSTTSFRLGNRVIPGHNHLLGSVRGVDGIKTGYTRAAGYNLATSVKVDGR 261

Query: 262 PIVAVVMGMPTSQERDQKALELITSFLEKKTLKH 295
            IV VV+G  ++  RD +  +LI ++L   + KH
Sbjct: 262 SIVGVVLGGASTPARDNQMRKLIATYLPVASTKH 295


>gi|209884896|ref|YP_002288753.1| serine-type D-Ala-D-Ala carboxypeptidase [Oligotropha
           carboxidovorans OM5]
 gi|209873092|gb|ACI92888.1| serine-type D-Ala-D-Ala carboxypeptidase [Oligotropha
           carboxidovorans OM5]
          Length = 587

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/245 (45%), Positives = 162/245 (66%), Gaps = 1/245 (0%)

Query: 52  PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P ++SI++D N    +     D  R+PASLTK+MTLY++FE +++ KL L++Q+ VS+ A
Sbjct: 52  PPFASIIVDANSGATLQSTNADATRHPASLTKIMTLYMLFEQIENGKLRLDSQLEVSRHA 111

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           + Q P+KL L+       E  I  ++TRSAND S    E I+GSE+ FA +M+ KA+ +G
Sbjct: 112 SAQAPTKLGLRPGQTIRVEDAIKGIVTRSANDASVVVAEAIAGSEEGFAKMMTRKARALG 171

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M NT Y NASGL D +QITTARDQA LG  ++  FP+YY+YFS   F +R R I NHN L
Sbjct: 172 MNNTTYVNASGLPDSDQITTARDQATLGRAIQDRFPKYYRYFSTSVFTWRGRPIRNHNHL 231

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L ++  +DGIKTGY R SGFN+V+++R  +  +V VV+G  TS  RD    +L+ ++L+ 
Sbjct: 232 LGRVEGVDGIKTGYIRASGFNLVSNIRRGNRHLVGVVLGGRTSGARDATMRKLLATYLDD 291

Query: 291 KTLKH 295
            + + 
Sbjct: 292 ASTRR 296


>gi|148256123|ref|YP_001240708.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp.
           BTAi1]
 gi|146408296|gb|ABQ36802.1| putative D-alanyl-D-alanine carboxypeptidase (Peptidase
           S11)(DD-carboxypeptidase) [Bradyrhizobium sp. BTAi1]
          Length = 590

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 119/245 (48%), Positives = 156/245 (63%), Gaps = 1/245 (0%)

Query: 52  PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P ++SIV+D N    +T    D  R+PASLTK+MTLY++FE L S K+ L+T++PVS+ A
Sbjct: 57  PAFASIVVDGNSGAVLTATNPDALRHPASLTKIMTLYLLFERLDSGKMKLDTEMPVSEHA 116

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           + Q+P+KL L+       E  I  L+TRSAND +    E I G E +FA +M+ KA+ +G
Sbjct: 117 SEQSPTKLGLRPGQTIRVEDAIKGLVTRSANDAAVVIAEAIGGDEDEFAKMMTRKARALG 176

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M  T Y NASGL    QITTARDQ+ILG  ++  FP+YY+YFS   F YR + I NHN L
Sbjct: 177 MSRTTYVNASGLPADEQITTARDQSILGRAIQDRFPRYYRYFSTVVFNYRGQSIRNHNHL 236

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L  +  IDGIKTGYTR SGFNIVTSLR  +  +V VV+G  +   RD     L+   LEK
Sbjct: 237 LGNVEGIDGIKTGYTRASGFNIVTSLRRGNRHLVGVVLGGRSGGSRDAIMRNLLAENLEK 296

Query: 291 KTLKH 295
              + 
Sbjct: 297 GATRR 301


>gi|13474143|ref|NP_105711.1| penicillin-binding protein [Mesorhizobium loti MAFF303099]
 gi|14024895|dbj|BAB51497.1| penicillin-binding protein [Mesorhizobium loti MAFF303099]
          Length = 304

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 116/275 (42%), Positives = 174/275 (63%), Gaps = 6/275 (2%)

Query: 24  IQRNIQLMGKILFLSIIMISMASE----LHAKP-KYSSIVIDVNKN-QMTGFKQDEPRYP 77
           +QR +  +G +L ++    +   +    + A P KY++IV+DV    QM        RYP
Sbjct: 17  LQRVLVALGLLLMVAGCSTATPPDQVLTVPAPPQKYAAIVVDVKTGKQMFEVNSTAQRYP 76

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTKMMTLY++FE ++S ++   TQIPVS  AA+Q P+K+  +       +  I A++ 
Sbjct: 77  ASLTKMMTLYLLFEAMESGRVTKETQIPVSDHAASQPPTKMRFRRGETIDVDSAIRAIVV 136

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +SANDV+ A GE++ GSE +FA +M++KA+ +GM +T ++NASGL D  Q+TTARD A+L
Sbjct: 137 KSANDVAVAVGEYLGGSEDRFAAMMTSKARSLGMTSTTFRNASGLPDDGQMTTARDMAVL 196

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
           G+ LR+ FPQ++ YFS   F +R R++  HN +L ++  +DGIKTGY R SGFNIVTS  
Sbjct: 197 GMALRQRFPQHFHYFSESDFMFRGRLVRGHNDMLGRVRGVDGIKTGYIRASGFNIVTSYN 256

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
                ++ VVMG  ++++R+     LI   L   T
Sbjct: 257 ADGRQLIVVVMGADSARQRNDHVEALIQRSLSPTT 291


>gi|158423216|ref|YP_001524508.1| putative D-alanyl-D-alanine carboxypeptidase precursor
           [Azorhizobium caulinodans ORS 571]
 gi|158330105|dbj|BAF87590.1| putative D-alanyl-D-alanine carboxypeptidase precursor
           [Azorhizobium caulinodans ORS 571]
          Length = 629

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 111/238 (46%), Positives = 164/238 (68%), Gaps = 3/238 (1%)

Query: 55  SSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           ++IV+D N  ++  +++  D  R+PASLTK+MTLY++FE LQ+ +L L++ +PVS  AA+
Sbjct: 123 AAIVVDGNTGKVL-YEENADSLRHPASLTKIMTLYMLFEQLQAGRLKLDSDLPVSAHAAS 181

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           Q+P+KL L+  +    E  I A++TRSAND +   GE I G+E  FA +M+ KA+ +GM 
Sbjct: 182 QSPTKLNLRPGSTIEVEDAIKAVVTRSANDAAVVIGEAIGGTESNFAEMMTRKARALGMS 241

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           NT ++NASGL +  Q+TTARD ++LG  ++  FP+ Y+YFS R F YR   I NHN+L+ 
Sbjct: 242 NTTFRNASGLPNPGQVTTARDLSVLGRAIQDRFPREYRYFSTRAFVYRGETIGNHNRLML 301

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +M  +DGIKTGYT  SGFN+VTSL   D  +V VV+G  ++  RDQ+   ++TS L +
Sbjct: 302 RMEGVDGIKTGYTNASGFNLVTSLHRDDRFLVGVVLGGSSASSRDQRMASILTSNLPR 359


>gi|217976936|ref|YP_002361083.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris
           BL2]
 gi|217502312|gb|ACK49721.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris
           BL2]
          Length = 614

 Score =  236 bits (601), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 109/232 (46%), Positives = 163/232 (70%), Gaps = 1/232 (0%)

Query: 54  YSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +++IV+D N  + +    +DEPR+PAS+TK+MTLY++FE L+  +L L+++IP+S  AA 
Sbjct: 80  FAAIVVDGNSGEALYARNEDEPRHPASITKVMTLYLLFEQLEQGRLRLDSEIPISARAAA 139

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           Q P+KL L+     + +  I A++TRSAND++ A  E + G E +FA LM+ KA+++GM+
Sbjct: 140 QKPTKLGLRPGRTISVDDAIKAIVTRSANDIAVAIAEAVGGDEDRFADLMTRKARELGMR 199

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           NT Y NASGL    QITTARD +ILG  +++ FP+YY+YFS R F +    I NHN+L++
Sbjct: 200 NTKYVNASGLPADAQITTARDLSILGRAVQERFPRYYRYFSTRTFYFAGAAIRNHNRLMD 259

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           ++  +DGIKTGYT  SGFN++TS++     IVAVVMG  ++  RD+   +LI
Sbjct: 260 RVEGMDGIKTGYTNASGFNLLTSVKRDGHYIVAVVMGGVSAPSRDRIMADLI 311


>gi|92117941|ref|YP_577670.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis
           X14]
 gi|91800835|gb|ABE63210.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis
           X14]
          Length = 586

 Score =  235 bits (600), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 110/245 (44%), Positives = 159/245 (64%), Gaps = 1/245 (0%)

Query: 52  PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P ++SI++D N    ++    D  R+PASLTKMMTLY++FE L + K++L+T++ VS  A
Sbjct: 53  PPFASIIVDANSGATLSSTNPDSLRHPASLTKMMTLYLLFERLDAGKINLDTEMRVSGHA 112

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A Q+P+KL L+       E  I  L+T+SAND +    E + G E  FA +M+ KA+ +G
Sbjct: 113 AAQDPTKLGLRSGQTIRVEDAIKGLVTKSANDAAVVIAEAVGGDEDDFARMMTRKARALG 172

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M  T+Y+NASGL D +Q+TTARDQA LG  L+  FP+YY+YF+   F +R R I  HN L
Sbjct: 173 MTRTVYRNASGLPDDDQVTTARDQATLGRALQDRFPRYYRYFATTSFTFRGRTIRGHNHL 232

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L  +  +DGIKTGY R+SGFN+VT+L+  +  +V VV+G  +S  RD    +L+T  L+K
Sbjct: 233 LGSVDGVDGIKTGYIRSSGFNLVTNLKRGNRHLVGVVLGGRSSGSRDATMRKLLTDNLDK 292

Query: 291 KTLKH 295
              + 
Sbjct: 293 AATRR 297


>gi|110633724|ref|YP_673932.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium
           sp. BNC1]
 gi|110284708|gb|ABG62767.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Chelativorans
           sp. BNC1]
          Length = 465

 Score =  235 bits (600), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 119/247 (48%), Positives = 160/247 (64%), Gaps = 1/247 (0%)

Query: 52  PKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           PKY+ IVID    Q+      DE RYPASLTKMMTLY++FE + + ++  +T I  SK A
Sbjct: 58  PKYAGIVIDAKTGQVLYEDSADELRYPASLTKMMTLYLVFESMAAGRISKSTSITFSKNA 117

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           + + P+KL +      T EQ ILALITRSAND +TA  E + GSE+ FA +M+ KA+++G
Sbjct: 118 SAEPPTKLGVPAGKSITVEQAILALITRSANDAATAIAEKLGGSEESFARMMTAKARQLG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M++T ++NA GL +  Q TTARD A LGI LR+++PQYY YFS R F +  + I  HN L
Sbjct: 178 MKSTTFRNAHGLPNNAQKTTARDMARLGIALREHYPQYYDYFSTRSFVFSGKKINGHNNL 237

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L ++   DGIKTGY   SGFN+V+S+      IVAVVMG  T++ RD   + LI  +L K
Sbjct: 238 LGRVKGADGIKTGYINASGFNLVSSVSTGGRQIVAVVMGGKTARSRDAHMVSLIERYLPK 297

Query: 291 KTLKHQQ 297
            +    Q
Sbjct: 298 ASTGRGQ 304


>gi|260459198|ref|ZP_05807453.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium
           opportunistum WSM2075]
 gi|259034752|gb|EEW36008.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium
           opportunistum WSM2075]
          Length = 482

 Score =  235 bits (599), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 117/262 (44%), Positives = 169/262 (64%), Gaps = 5/262 (1%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP--RYPASLTKMMTLYIIFEY 92
           L L+ +   +AS L A+   ++IV+D    ++  +  D    RYPASLTKMMTLY+ FE 
Sbjct: 24  LALTFVCADVASSLAAR--QAAIVVDAKTGKVL-YSADANGRRYPASLTKMMTLYLTFEA 80

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           L   K+  NT +  S  A+ + P+KL +K     T +  IL+++T+SAND +TA GE I 
Sbjct: 81  LAKGKISRNTPVVFSAKASAEAPTKLGVKPGGSVTVDTAILSIVTKSANDSATALGEMIG 140

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           G+E  FA +M+ KA+++GM  T+++NA+GL D  Q TTARD A LGI LR++FPQYY YF
Sbjct: 141 GNETNFARMMTAKARQLGMNGTVFRNANGLPDPGQFTTARDMATLGIALREHFPQYYGYF 200

Query: 213 SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           S R F Y  + I  HN+LL ++  +DGIKTGYTR SGFN+V+S+   +  +VAVVMG  +
Sbjct: 201 SQRSFLYGRQRINGHNRLLGRIKGVDGIKTGYTRASGFNLVSSVSDGNRRLVAVVMGGTS 260

Query: 273 SQERDQKALELITSFLEKKTLK 294
              RD +   LI ++L + + +
Sbjct: 261 GGSRDNQMAALINTYLPRASTR 282


>gi|90424819|ref|YP_533189.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisB18]
 gi|90106833|gb|ABD88870.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisB18]
          Length = 588

 Score =  235 bits (599), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 112/248 (45%), Positives = 162/248 (65%), Gaps = 1/248 (0%)

Query: 52  PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P ++SI++D N    +T    D  R+PASLTK+MTLY++FE L+S K+ L++++ VS+ A
Sbjct: 54  PAFASIIVDGNSGDILTANNPDGLRHPASLTKIMTLYLLFERLESGKMQLDSEMDVSEHA 113

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           + Q P+KL L+       E  I AL+TRSAND +    E I+G E  FA LM+ KA+ +G
Sbjct: 114 SIQAPTKLGLRPGQTIRVEDAIKALVTRSANDAAVVISEAIAGDEGDFAKLMTKKARSLG 173

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M  T+Y+NASGL D +Q+TTARDQA LG  +++ FP+YY++FS   F YR   I NHN+L
Sbjct: 174 MTRTVYRNASGLPDDDQVTTARDQATLGRAVQERFPRYYRFFSTSVFNYRGNAIRNHNRL 233

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L  +  +DGIKTGYTR SGFN+VTS+   +  ++ VV+G  +   RD     L+ + L+K
Sbjct: 234 LGSVEGVDGIKTGYTRASGFNLVTSMHRGNRHLIGVVLGGRSGGSRDAIMRNLLAANLDK 293

Query: 291 KTLKHQQT 298
            + +   T
Sbjct: 294 ASTRRTVT 301


>gi|298291483|ref|YP_003693422.1| serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506]
 gi|296927994|gb|ADH88803.1| Serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506]
          Length = 570

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 112/262 (42%), Positives = 167/262 (63%), Gaps = 1/262 (0%)

Query: 54  YSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           YS I+ID N  ++   +  D  R+PAS+TK+MTLY++FE LQ+ K+ LNT + VS  AA+
Sbjct: 59  YSDIIIDANTGRILHEQNADALRHPASVTKVMTLYLLFEQLQAGKMRLNTPLRVSAYAAS 118

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           Q PSKL +K  +    E  I ALITRSANDV+    E ISG    FA LM+ +A+++GM 
Sbjct: 119 QQPSKLGVKPGSTIVVEDAIQALITRSANDVAVVVAENISGDASTFAALMTRRARQLGMS 178

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
            T ++N +GL +  Q+TTARD A LG  +++ FP+YY YF  R F YR + I NHN++  
Sbjct: 179 RTTFRNPNGLPNPQQVTTARDLATLGRAIQERFPKYYAYFETRSFMYRGQAIRNHNRMFG 238

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +++ +DGIKTGYT  SGFN++TS++     ++ VVMG  ++  RD + + L++  + K  
Sbjct: 239 RINGVDGIKTGYTNASGFNLLTSVKQNGRYVIGVVMGGASAASRDNRMVALLSDAMPKSY 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLM 314
              QQ  R D++ S +    ++
Sbjct: 299 AGRQQVARMDSVPSGAADDDVV 320


>gi|307946404|ref|ZP_07661739.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Roseibium sp.
           TrichSKD4]
 gi|307770068|gb|EFO29294.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Roseibium sp.
           TrichSKD4]
          Length = 492

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 120/270 (44%), Positives = 175/270 (64%), Gaps = 1/270 (0%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTK 82
           I R+++++G  L ++ +  +  +   A  KY+ IV+D    + +     D  RYPASLTK
Sbjct: 9   ISRHVRIVGSALLIAGMTAAGTAPAAANSKYAGIVVDAKTGKTLYADSADAYRYPASLTK 68

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MTLYI+FE L++ +L LN++  VSK A+ + PSK+ L+       +  ILAL+T+SAND
Sbjct: 69  IMTLYIVFEELEAGRLSLNSKFKVSKNASKEPPSKIGLRPGQTIKVKDAILALVTKSAND 128

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
           V+T   E I+GSE KFA  M+N A+++GM+ T ++NA GL +  Q TTARD + LGI ++
Sbjct: 129 VATTVAENIAGSEAKFAKRMTNTARQLGMKRTTFRNAHGLPNSRQRTTARDMSRLGIAIQ 188

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           + FP+YYKYF+ R + Y+ R   NHNKLL ++  +DGIKTGY R SGFN+VTS+      
Sbjct: 189 ERFPKYYKYFNTRVYSYKGRRYGNHNKLLGRVKGVDGIKTGYIRASGFNLVTSVNRNGRH 248

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKT 292
           IVAVVMG  T   R++    LI  +L K +
Sbjct: 249 IVAVVMGGRTGASRNRHMTNLIGRYLHKAS 278


>gi|13470857|ref|NP_102426.1| penicillin-binding protein [Mesorhizobium loti MAFF303099]
 gi|14021600|dbj|BAB48212.1| penicillin-binding protein [Mesorhizobium loti MAFF303099]
          Length = 485

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 114/262 (43%), Positives = 168/262 (64%), Gaps = 5/262 (1%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP--RYPASLTKMMTLYIIFEY 92
           L ++ +   +AS L A+P  ++IV+D    ++  +  D    RYPASLTKMMTLY+ FE 
Sbjct: 24  LAMTFVCADVASSLAARP--AAIVVDAKTGKVL-YSADANGRRYPASLTKMMTLYLTFEA 80

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           +   K+  NT +  S  A+ + P+KL +K     + E  IL+++T+SAND +TA GE + 
Sbjct: 81  MAKGKISRNTPVVFSAKASAEAPTKLGVKPGGSVSVETAILSIVTKSANDSATALGEMLG 140

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           G E  FA +M+ KA+ +GM  T+++NA+GL D  Q TTARD A LGI LR++FPQYY YF
Sbjct: 141 GDETTFARMMTAKARALGMNGTVFRNANGLPDPGQFTTARDMATLGIALREHFPQYYGYF 200

Query: 213 SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           S R F Y  + I  HN+LL ++  +DGIKTGYTR SGFN+V+S+   +  +VAVVMG  +
Sbjct: 201 SQRSFLYGRQRINGHNRLLGRIKGVDGIKTGYTRASGFNLVSSVSDGNRRLVAVVMGGTS 260

Query: 273 SQERDQKALELITSFLEKKTLK 294
              RD +   LI +++ + + +
Sbjct: 261 GGSRDNQMASLINTYMPRASTR 282


>gi|319783686|ref|YP_004143162.1| beta-lactamase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169574|gb|ADV13112.1| Beta-lactamase [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 469

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 116/262 (44%), Positives = 168/262 (64%), Gaps = 5/262 (1%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP--RYPASLTKMMTLYIIFEY 92
           L ++ +   +AS L AK   ++IV+D    ++  +  D    RYPASLTKMMTLY+ FE 
Sbjct: 24  LAMTFVFGDVASSLAAK--QAAIVVDAKTGKVL-YSADANGRRYPASLTKMMTLYLTFEA 80

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           +   K+  NT +  S  A+ + P+KL +K     T E  IL+++T+SAND +TA GE + 
Sbjct: 81  MAKGKISRNTPVVFSAKASAEAPTKLGVKPGGSVTVETAILSIVTKSANDSATALGEMLG 140

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           G+E  FA +M+ KA+ +GM  T+++NA+GL D  Q TTARD A LGI LR++FPQYY YF
Sbjct: 141 GNETTFARMMTAKARALGMNGTVFRNANGLPDPGQFTTARDMATLGIALREHFPQYYGYF 200

Query: 213 SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           S R F Y  + I  HN+LL ++  +DGIKTGYTR SGFN+V+S+   +  IV VVMG  +
Sbjct: 201 SQRSFLYGRQRINGHNRLLGRIKGVDGIKTGYTRASGFNLVSSVSDGNRRIVGVVMGGSS 260

Query: 273 SQERDQKALELITSFLEKKTLK 294
            + RD +   LI ++L + + +
Sbjct: 261 GRSRDNQMASLINTYLPRASTR 282


>gi|91977526|ref|YP_570185.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisB5]
 gi|91683982|gb|ABE40284.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisB5]
          Length = 578

 Score =  233 bits (593), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 110/242 (45%), Positives = 158/242 (65%), Gaps = 1/242 (0%)

Query: 52  PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P ++SI++D N    +T    D  R+PASLTK+MTLY++FE L+  KL L++++ VS+ A
Sbjct: 54  PAFASIIVDANTGATLTATNPDALRHPASLTKIMTLYMLFERLEQGKLQLDSEMEVSEHA 113

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           ++Q P+KL L+       E  I  L+TRSAND +    E + GSE  FA +M+ KA+ +G
Sbjct: 114 SSQAPTKLGLRPGQSLRVEDAIKGLVTRSANDAAVVIAETVGGSETDFAKMMTRKARALG 173

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M  T+Y+NASGL + +Q+TTARDQ+ILG  ++  FP+YY+YF+   F YR   I NHN+L
Sbjct: 174 MSRTVYRNASGLPNDDQVTTARDQSILGRAIQDRFPRYYRYFATASFNYRGNSIRNHNRL 233

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L  +  +DGIKTGYTR SGFN+VTS+   +  +V VV+G  +   RD     L+   LEK
Sbjct: 234 LGNVEGVDGIKTGYTRASGFNLVTSMHRGNRFLVGVVLGGRSGGSRDAIMRNLLAENLEK 293

Query: 291 KT 292
            +
Sbjct: 294 AS 295


>gi|254719233|ref|ZP_05181044.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
 gi|265984229|ref|ZP_06096964.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
 gi|306837982|ref|ZP_07470840.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. NF 2653]
 gi|264662821|gb|EEZ33082.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
 gi|306406906|gb|EFM63127.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. NF 2653]
          Length = 472

 Score =  233 bits (593), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 108/237 (45%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 53  KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +Y++IVID N  + +     D  RYPASLTKMMTLY++FE + + +++ NT+IPVS  AA
Sbjct: 44  RYAAIVIDANTGKTLFSANPDAQRYPASLTKMMTLYMLFEAIHAGRINKNTRIPVSAYAA 103

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++ P+K+  +       E   LA+IT+SANDV+ A GE++ GSE++FA +M+ +A+++GM
Sbjct: 104 SRPPTKMGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGM 163

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT ++NASGL +  Q ++ARD AILG+ LR++FP+ + YFS   F +R + I  HN+LL
Sbjct: 164 RNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFEFRGQTIRGHNRLL 223

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            ++  +DGIKTGYT  SG+N+V+S+      +VAVVMG  T   RD    +LI  +L
Sbjct: 224 GRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLIRKYL 280


>gi|39936213|ref|NP_948489.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris CGA009]
 gi|39650068|emb|CAE28591.1| possible D-alanyl-D-alanine carboxypeptidase [Rhodopseudomonas
           palustris CGA009]
          Length = 585

 Score =  232 bits (591), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 111/244 (45%), Positives = 157/244 (64%), Gaps = 1/244 (0%)

Query: 52  PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P ++SI++D N    +T    D  R+PASLTK+MTLY++FE L+  KL L++++ VS+ A
Sbjct: 55  PAFASIIVDGNTGAVLTATNPDSLRHPASLTKIMTLYLLFEKLEQGKLSLDSEMEVSEHA 114

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           + Q P+KL L+  +    E  I  L+TRSAND +    E + GSE  FA LM+ KA+ +G
Sbjct: 115 SEQAPTKLGLRPGSTLRVEDAIKGLVTRSANDAAVVIAETVGGSESDFAKLMTRKARALG 174

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M  T+Y+NASGL +  Q+TTARDQ+ILG  ++  FP+YY+YF+   F YR   I NHN+L
Sbjct: 175 MSRTVYRNASGLPNDEQVTTARDQSILGRAIQDRFPRYYRYFATSVFNYRGHAIRNHNRL 234

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L  +  +DGIKTGYTR SGFN+VTS+   +  +V VV+G  +   RD     L+   LEK
Sbjct: 235 LGNVEGVDGIKTGYTRASGFNLVTSMHRGNRFLVGVVLGGRSGGSRDAIMRNLLAENLEK 294

Query: 291 KTLK 294
              +
Sbjct: 295 GATR 298


>gi|121602290|ref|YP_988886.1| D-alanyl-D-alanine carboxypeptidase [Bartonella bacilliformis
           KC583]
 gi|120614467|gb|ABM45068.1| D-alanyl-D-alanine carboxypeptidase [Bartonella bacilliformis
           KC583]
          Length = 448

 Score =  232 bits (591), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 125/266 (46%), Positives = 175/266 (65%), Gaps = 10/266 (3%)

Query: 35  LFLSIIMISMASELHAKPK------YSSIVIDVNKNQMTGFKQDEP--RYPASLTKMMTL 86
           +FL +I ++  S + A PK      Y++IVID N  + T F+ +    RYPASLTKMMTL
Sbjct: 17  IFL-VIFVASYSWVEAAPKGVHADKYAAIVIDANTGK-TLFQANATMRRYPASLTKMMTL 74

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y++FE +Q +++  NT IP+S  A+T+ P+K+ LK       E    ALIT+SANDV+ A
Sbjct: 75  YMLFEAMQVRRVAPNTPIPISAYASTRPPTKIGLKTGQTIPVEAAAKALITKSANDVAAA 134

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
            GE++ GSE+KFA +M+ KA+++GM NT + NASGL D    +TA+D AIL + LR++FP
Sbjct: 135 IGEYLGGSEQKFAQMMTVKARQLGMINTNFANASGLPDTRNYSTAQDLAILSLALREHFP 194

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           Q YK F I+ F +  +II +HNKL+  M  +DGIKTGYT+ SG N+ TS+R     IVAV
Sbjct: 195 QQYKLFKIKSFVFHGKIINSHNKLVQTMKGVDGIKTGYTQMSGSNLATSMRLGGRSIVAV 254

Query: 267 VMGMPTSQERDQKALELITSFLEKKT 292
           VMG  +S ERD     L+  +L K +
Sbjct: 255 VMGGKSSVERDIHMANLLNKYLPKAS 280


>gi|192291929|ref|YP_001992534.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris TIE-1]
 gi|192285678|gb|ACF02059.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris TIE-1]
          Length = 585

 Score =  231 bits (590), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 111/244 (45%), Positives = 157/244 (64%), Gaps = 1/244 (0%)

Query: 52  PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P ++SI++D N    +T    D  R+PASLTK+MTLY++FE L+  KL L++++ VS+ A
Sbjct: 55  PAFASIIVDGNTGAVLTATNPDSLRHPASLTKIMTLYLLFEKLEQGKLSLDSEMEVSEHA 114

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           + Q P+KL L+  +    E  I  L+TRSAND +    E + GSE  FA LM+ KA+ +G
Sbjct: 115 SEQAPTKLGLRPGSTLRVEDAIKGLVTRSANDAAVVIAETVGGSESDFAKLMTRKARALG 174

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M  T+Y+NASGL +  Q+TTARDQ+ILG  ++  FP+YY+YF+   F YR   I NHN+L
Sbjct: 175 MSRTVYRNASGLPNDEQVTTARDQSILGRAIQDRFPRYYRYFATSVFNYRGHAIRNHNRL 234

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L  +  +DGIKTGYTR SGFN+VTS+   +  +V VV+G  +   RD     L+   LEK
Sbjct: 235 LGNVEGVDGIKTGYTRASGFNLVTSMHRGNRFLVGVVLGGRSGGSRDAIMRNLLAENLEK 294

Query: 291 KTLK 294
              +
Sbjct: 295 GATR 298


>gi|316933618|ref|YP_004108600.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris DX-1]
 gi|315601332|gb|ADU43867.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris DX-1]
          Length = 576

 Score =  231 bits (590), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 111/244 (45%), Positives = 158/244 (64%), Gaps = 1/244 (0%)

Query: 52  PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P ++SI++D N    ++    D  R+PASLTK+MTLY++FE L+  KL L++++ VS+ A
Sbjct: 54  PAFASIIVDGNSGAVLSATNPDSQRHPASLTKIMTLYLLFERLEQGKLSLDSEMEVSEFA 113

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           + Q P+KL L+       E  I  L+TRSAND +    E I GSE +FA +M+ KA+ +G
Sbjct: 114 SGQAPTKLGLRPGQKLRVEDAIKGLVTRSANDAAVVIAETIGGSEAEFARMMTRKARALG 173

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M  T+Y+NASGL +  Q+TTARDQ+ILG  ++  FP+YY+YFS   F YR + I NHN+L
Sbjct: 174 MSRTVYRNASGLPNSEQVTTARDQSILGRAVQDRFPRYYRYFSTSVFAYRGQSIRNHNRL 233

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L  +  +DGIKTGYTR SGFN+VTS+   +  +V VV+G  +   RD     L+   LEK
Sbjct: 234 LGSVEGVDGIKTGYTRASGFNLVTSMHRGNRFLVGVVLGGRSGGSRDAIMRNLLAENLEK 293

Query: 291 KTLK 294
              +
Sbjct: 294 GATR 297


>gi|319899049|ref|YP_004159142.1| penicillin-binding protein [Bartonella clarridgeiae 73]
 gi|319403013|emb|CBI76568.1| penicillin-binding protein [Bartonella clarridgeiae 73]
          Length = 449

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 125/273 (45%), Positives = 179/273 (65%), Gaps = 8/273 (2%)

Query: 34  ILFLSIIMIS----MASELHAKP-KYSSIVIDVNKNQMTGFKQDEP--RYPASLTKMMTL 86
           ++ L +++IS    +A+   A P KY++IVID N  + T F+ +    RYPASLTKMMTL
Sbjct: 16  VIPLIVLVISYSWALATPKEAHPDKYAAIVIDANTGK-TLFQANATLKRYPASLTKMMTL 74

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y+IFE ++++++  NT IP+S  AAT+ P+K+ +K     + E    ALIT+SANDV+TA
Sbjct: 75  YMIFEAMKNRRITPNTPIPISNYAATRPPTKMGIKAGQTISVESAAKALITKSANDVATA 134

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
            GE++ GSE+KFA +M+ KA+K+GM+NT + NASGL D    +TA+D A L + LRK+FP
Sbjct: 135 IGEYLGGSEQKFAQMMTVKARKLGMKNTRFANASGLPDTRNYSTAQDMATLALALRKHFP 194

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           + YK F +  FR+R + I +HN L+  +  IDGIKTGYT+ SG N+ TS+R     IVAV
Sbjct: 195 EQYKLFKMTHFRFRGQTINSHNTLIKTIKGIDGIKTGYTQMSGSNLATSMRIDGRSIVAV 254

Query: 267 VMGMPTSQERDQKALELITSFLEKKTLKHQQTH 299
           VMG  +S  RD     L+  +L K +      H
Sbjct: 255 VMGGKSSTTRDIHMASLLKQYLPKASRTKTDEH 287


>gi|114569833|ref|YP_756513.1| Serine-type D-Ala-D-Ala carboxypeptidase [Maricaulis maris MCS10]
 gi|114340295|gb|ABI65575.1| Serine-type D-Ala-D-Ala carboxypeptidase [Maricaulis maris MCS10]
          Length = 450

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 112/269 (41%), Positives = 169/269 (62%), Gaps = 4/269 (1%)

Query: 34  ILFLSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFE 91
           IL  S+ ++ +++  HA   +Y++ V++ N   +   ++ E  R+PASLTKMMTLY++F+
Sbjct: 17  ILSCSLALLGLSTPAHANNSRYAAFVVEENTGVVLHSRRSEAERFPASLTKMMTLYMLFD 76

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            L++ ++ LN  I +S  AA  +PS+L L   +  + E  I AL+ +SANDV+ A GE +
Sbjct: 77  ALEAGEIGLNDPIRISANAANASPSRLGLAPGSTISAENAIRALVVKSANDVAVAVGERL 136

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            G E +F  LM+ +A +IG+ NT ++NASGL +  Q TTARD A L I L ++FPQY+ Y
Sbjct: 137 GGGESRFGELMTARAAEIGLTNTTFRNASGLPNSRQTTTARDMARLAIALHRDFPQYFDY 196

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           F+   FRY  R   NHN L+ ++  +DG+KTGY R SGFN+V S    D  ++ V+MG P
Sbjct: 197 FNEETFRYNGRTYRNHNSLVGRVRGVDGLKTGYIRASGFNVVVSAERDDHRLITVIMGGP 256

Query: 272 TSQERDQKALELITSFLEKKTLKHQQTHR 300
           ++  RD  A ELI +     TL+ +Q  R
Sbjct: 257 SAAARDAHAEELIEAAF--ATLEQRQDTR 283


>gi|170747224|ref|YP_001753484.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653746|gb|ACB22801.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 489

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 107/240 (44%), Positives = 159/240 (66%), Gaps = 1/240 (0%)

Query: 52  PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P Y+++V+DV   + +    +D  R+PAS+TK+MTLY++FE ++  K  L++ + +S  A
Sbjct: 50  PPYAAMVVDVKSGKTLHAVNEDALRHPASITKVMTLYLLFEQMERGKFALDSDLTISAHA 109

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A Q PSKL L+     + E  I A++T+SANDV+ A GE I+GSE++FA +M+ KA  +G
Sbjct: 110 AAQAPSKLGLRPGQTISVEDAIKAIVTKSANDVACAIGENIAGSEERFAQMMTAKAHALG 169

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M  T Y NASGL D  Q+TTARD  +L   ++  FP YY+YF  R F +R R+I NHN L
Sbjct: 170 MSRTHYANASGLPDPEQLTTARDLTVLARAIQDRFPHYYRYFQTRSFAFRGRVIGNHNHL 229

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L  +  +DGIKTGYTR+SGFN++T+ + +   IVA+V+G  +   RD+   +L+ S L +
Sbjct: 230 LGNVQGVDGIKTGYTRDSGFNLMTAAKSEGRQIVAIVLGGKSGAGRDRIMADLVRSSLPR 289


>gi|85716353|ref|ZP_01047326.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
           sp. Nb-311A]
 gi|85696869|gb|EAQ34754.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
           sp. Nb-311A]
          Length = 582

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/245 (44%), Positives = 160/245 (65%), Gaps = 1/245 (0%)

Query: 52  PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P ++SIV+D N    ++    D PR+PASLTKMMTLY++FE L + ++ L++++ VS  A
Sbjct: 52  PPFASIVVDANSGATLSSVNPDSPRHPASLTKMMTLYMLFERLDAGRISLDSEMRVSAHA 111

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A Q+P+KL L++      E  I  L+T+SAND +    E I+G E  FA +M+ KA+ +G
Sbjct: 112 AAQDPTKLGLRQGQTIRVEDAIKGLVTKSANDAAVVIAEAIAGDEDDFARMMTRKARALG 171

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M  T+Y+NASGL D +QITTARDQA LG  L+  FP+YY+YF+   F +R R +  HN+L
Sbjct: 172 MTRTVYRNASGLPDDDQITTARDQATLGRALQDRFPRYYRYFATTSFTFRGRTVRGHNRL 231

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +  +  +DGIKTGY R+SGFN+VT++R  +  +V VV+G  +   RD    +L+   L+K
Sbjct: 232 IGSVDGVDGIKTGYIRSSGFNLVTNIRRGNRHLVGVVLGGRSGSSRDATMRKLLAENLDK 291

Query: 291 KTLKH 295
              + 
Sbjct: 292 AATRR 296


>gi|306841894|ref|ZP_07474574.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO2]
 gi|306288024|gb|EFM59426.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO2]
          Length = 472

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 106/237 (44%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 53  KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +Y++IV+D N  + +     D  RYPASLTKMMTLY++FE + + +++ +T+IPVS  AA
Sbjct: 44  RYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIHAGRINKDTRIPVSAYAA 103

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++ P+K+  +       E   LA+IT+SANDV+ A GE++ GSE++FA +M+ +A+++GM
Sbjct: 104 SRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGM 163

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT ++NASGL +  Q ++ARD AILG+ LR++FP+ + YFS   F +R + I  HN+LL
Sbjct: 164 RNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFEFRGQTIRGHNRLL 223

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            ++  +DGIKTGYT  SG+N+V+S+      +VAVVMG  T   RD    +LI  +L
Sbjct: 224 GRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLIRKYL 280


>gi|86749513|ref|YP_486009.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris HaA2]
 gi|86572541|gb|ABD07098.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris HaA2]
          Length = 573

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/244 (44%), Positives = 160/244 (65%), Gaps = 1/244 (0%)

Query: 52  PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P ++SI++D N    ++    D  R+PASLTK+MTLY++FE L++ KL L++++ VS  A
Sbjct: 51  PAFASIIVDANTGATLSATNPDAVRHPASLTKIMTLYLLFERLEAGKLSLDSEMEVSAHA 110

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           ++Q P+KL L+       E  I AL+TRSAND +    E + GSE +FA +M+ KA+ +G
Sbjct: 111 SSQAPTKLGLRPGQTLRVEDAIKALVTRSANDAAVVIAETVGGSEAEFARMMTRKARALG 170

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M  T+Y+N++GL + +Q+TTARDQ+ILG  ++  FP+YY+YF+   F YR   I NHN+L
Sbjct: 171 MSRTVYRNSNGLPNDDQVTTARDQSILGRAIQDRFPRYYRYFATTTFNYRGASIRNHNRL 230

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L  +  +DGIKTGYTR SGFN+VTS+   +  +V VV+G  +   RD     L+   LEK
Sbjct: 231 LGNVEGVDGIKTGYTRASGFNLVTSMHRGNRFLVGVVLGGRSGGSRDAIMRNLLAENLEK 290

Query: 291 KTLK 294
              +
Sbjct: 291 GATR 294


>gi|307546895|ref|YP_003899374.1| serine-type D-Ala-D-Ala carboxypeptidase [Halomonas elongata DSM
           2581]
 gi|307218919|emb|CBV44189.1| serine-type D-Ala-D-Ala carboxypeptidase [Halomonas elongata DSM
           2581]
          Length = 494

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 113/273 (41%), Positives = 169/273 (61%), Gaps = 5/273 (1%)

Query: 52  PKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P+Y+ IV+D + +++      D PRYPASLTKMMTLY++FE L    + L  ++PVS TA
Sbjct: 45  PRYAGIVVDTDTSEILYAENADAPRYPASLTKMMTLYMLFERLDQGGMTLGQRLPVSATA 104

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           +    +KL+LK       E+ I ALI RSANDV+    E + GSE  FA +M+++A ++G
Sbjct: 105 SEMPATKLWLKPGDSIPVEKAIQALIVRSANDVAVVVAEALGGSESHFARMMTSRAHELG 164

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M NT ++NASGL D  Q+TTARD A+L   L  +FPQYY YFS+ +F +R + +T HN L
Sbjct: 165 MSNTTFRNASGLPDDRQVTTARDMALLARRLMLDFPQYYPYFSLDRFTWRGKTLTGHNNL 224

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L+     DG+KTG+ R SGFN+ TS +     I++VVMG  T+  RD    E + + L++
Sbjct: 225 LDSYPGADGLKTGFIRASGFNVATSAKRGGRRILSVVMGGYTASSRD----EHMANLLDR 280

Query: 291 KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYS 323
             L+      +  L++T + +  ++ + +R  S
Sbjct: 281 GFLRASLVDGRGFLANTRISEDYLLPEARRPMS 313


>gi|260566296|ref|ZP_05836766.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40]
 gi|260155814|gb|EEW90894.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40]
          Length = 461

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/237 (44%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 53  KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +Y++IV+D N  + +     D  RYPASLTKMMTLY++FE + + +++ +T+IPVS  AA
Sbjct: 33  RYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIHAGRINKDTRIPVSAYAA 92

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++ P+K+  +       E   LA+IT+SANDV+ A GE++ GSE++FA +M+ +A+++GM
Sbjct: 93  SRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGM 152

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT ++NASGL +  Q ++ARD AILG+ LR++FP+ + YFS   F +R + I  HN+LL
Sbjct: 153 RNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFDFRGQTIRGHNRLL 212

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            ++  +DGIKTGYT  SG+N+V+S+      +VAVVMG  T   RD    +LI  +L
Sbjct: 213 GRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLIRKYL 269


>gi|49474302|ref|YP_032344.1| penicillin-binding protein [Bartonella quintana str. Toulouse]
 gi|49239806|emb|CAF26196.1| Penicillin-binding protein [Bartonella quintana str. Toulouse]
          Length = 450

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 120/271 (44%), Positives = 173/271 (63%), Gaps = 3/271 (1%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP--RYPAS 79
           ++  + + +   +L LS    S   +     KY++IVID N  + T F+ +    RYPAS
Sbjct: 9   VHCYKKVAIAFIVLALSCFCASATPQEVYPDKYAAIVIDANTGK-TLFQANATLKRYPAS 67

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LTKMMTLY++F+ +  +++  NT IPVS+ AA + P+KL LK     + ++   ALITRS
Sbjct: 68  LTKMMTLYMLFQAMHMRRVTPNTPIPVSRNAAARPPTKLGLKAGQTISAQEAAKALITRS 127

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           ANDV+TA  E++ G+EKKFA +M+ KA+K+GM NT + NASGL D    +TARD A L +
Sbjct: 128 ANDVATAVAEYLGGNEKKFARMMTAKARKLGMTNTHFANASGLPDLRNYSTARDMATLSL 187

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            LRK+FPQ YK F  + F +R   + +HNKL+  M  +DGIKTGYT+ SG N+ TS+  +
Sbjct: 188 ALRKHFPQQYKLFKTKSFVFRGHTVKSHNKLVKTMKGVDGIKTGYTQMSGSNLATSMHIE 247

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              +VAVVMG  +S  RD+    L++ +L K
Sbjct: 248 GRSLVAVVMGGKSSTARDRHMANLLSQYLPK 278


>gi|161619123|ref|YP_001593010.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC
           23365]
 gi|254704458|ref|ZP_05166286.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
           686]
 gi|261755137|ref|ZP_05998846.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
           686]
 gi|161335934|gb|ABX62239.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC
           23365]
 gi|261744890|gb|EEY32816.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
           686]
          Length = 472

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/237 (44%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 53  KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +Y++IV+D N  + +     D  RYPASLTKMMTLY++FE + + +++ +T+IPVS  AA
Sbjct: 44  RYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIHAGRINKDTRIPVSAYAA 103

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++ P+K+  +       E   LA+IT+SANDV+ A GE++ GSE++FA +M+ +A+++GM
Sbjct: 104 SRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGM 163

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT ++NASGL +  Q ++ARD AILG+ LR++FP+ + YFS   F +R + I  HN+LL
Sbjct: 164 RNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFDFRGQTIRGHNRLL 223

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            ++  +DGIKTGYT  SG+N+V+S+      +VAVVMG  T   RD    +LI  +L
Sbjct: 224 GRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLIRKYL 280


>gi|23502050|ref|NP_698177.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330]
 gi|23348005|gb|AAN30092.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330]
          Length = 472

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/237 (44%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 53  KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +Y++IV+D N  + +     D  RYPASLTKMMTLY++FE + + +++ +T+IPVS  AA
Sbjct: 44  RYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIHAGRINKDTRIPVSAYAA 103

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++ P+K+  +       E   LA+IT+SANDV+ A GE++ GSE++FA +M+ +A+++GM
Sbjct: 104 SRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGM 163

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT ++NASGL +  Q ++ARD AILG+ LR++FP+ + YFS   F +R + I  HN+LL
Sbjct: 164 RNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFDFRGQTIRGHNRLL 223

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            ++  +DGIKTGYT  SG+N+V+S+      +VAVVMG  T   RD    +LI  +L
Sbjct: 224 GRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLIRKYL 280


>gi|254730424|ref|ZP_05189002.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
           str. 292]
 gi|260758130|ref|ZP_05870478.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
           str. 292]
 gi|260668448|gb|EEX55388.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
           str. 292]
          Length = 472

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/237 (44%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 53  KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +Y++IV+D N  + +     D  RYPASLTKMMTLY++FE + + +++ +T+IPVS  AA
Sbjct: 44  RYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIHAGRINKDTRIPVSAYAA 103

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++ P+K+  +       E   LA+IT+SANDV+ A GE++ GSE++FA +M+ +A+++GM
Sbjct: 104 SRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGM 163

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT ++NASGL +  Q ++ARD AILG+ LR++FP+ + YFS   F +R + I  HN+LL
Sbjct: 164 RNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFDFRGQTIRGHNRLL 223

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            ++  +DGIKTGYT  SG+N+V+S+      +VAVVMG  T   RD    +LI  +L
Sbjct: 224 GRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLIRKYL 280


>gi|254693878|ref|ZP_05155706.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
           str. Tulya]
 gi|261214165|ref|ZP_05928446.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
           str. Tulya]
 gi|260915772|gb|EEX82633.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
           str. Tulya]
          Length = 472

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/237 (44%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 53  KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +Y++IV+D N  + +     D  RYPASLTKMMTLY++FE + + +++ +T+IPVS  AA
Sbjct: 44  RYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIHAGRINKDTRIPVSAYAA 103

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++ P+K+  +       E   LA+IT+SANDV+ A GE++ GSE++FA +M+ +A+++GM
Sbjct: 104 SRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGM 163

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT ++NASGL +  Q ++ARD AILG+ LR++FP+ + YFS   F +R + I  HN+LL
Sbjct: 164 RNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFDFRGQTIRGHNRLL 223

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            ++  +DGIKTGYT  SG+N+V+S+      +VAVVMG  T   RD    +LI  +L
Sbjct: 224 GRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLIRKYL 280


>gi|17987097|ref|NP_539731.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase
           fraction C) [Brucella melitensis bv. 1 str. 16M]
 gi|225852669|ref|YP_002732902.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC
           23457]
 gi|256044826|ref|ZP_05447730.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256113731|ref|ZP_05454535.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
           str. Ether]
 gi|256263838|ref|ZP_05466370.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
           str. 63/9]
 gi|265991251|ref|ZP_06103808.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265995087|ref|ZP_06107644.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
           str. Ether]
 gi|17982757|gb|AAL51995.1| penicillin-binding protein 6 (d-alanyl-d-alanine carboxypeptidase
           fraction c) [Brucella melitensis bv. 1 str. 16M]
 gi|225641034|gb|ACO00948.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC
           23457]
 gi|262766200|gb|EEZ11989.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
           str. Ether]
 gi|263002035|gb|EEZ14610.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263093969|gb|EEZ17903.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
           str. 63/9]
 gi|326409190|gb|ADZ66255.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis M28]
          Length = 472

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/237 (44%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 53  KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +Y++IV+D N  + +     D  RYPASLTKMMTLY++FE + + +++ +T+IPVS  AA
Sbjct: 44  RYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIHAGRINKDTRIPVSAYAA 103

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++ P+K+  +       E   LA+IT+SANDV+ A GE++ GSE++FA +M+ +A+++GM
Sbjct: 104 SRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGM 163

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT ++NASGL +  Q ++ARD AILG+ LR++FP+ + YFS   F +R + I  HN+LL
Sbjct: 164 RNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFDFRGQTIRGHNRLL 223

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            ++  +DGIKTGYT  SG+N+V+S+      +VAVVMG  T   RD    +LI  +L
Sbjct: 224 GRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLIRKYL 280


>gi|62290085|ref|YP_221878.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str.
           9-941]
 gi|82700009|ref|YP_414583.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis biovar
           Abortus 2308]
 gi|148560388|ref|YP_001259090.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840]
 gi|163843436|ref|YP_001627840.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445]
 gi|225627640|ref|ZP_03785677.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo]
 gi|237815590|ref|ZP_04594587.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A]
 gi|254697529|ref|ZP_05159357.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254701913|ref|ZP_05163741.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
           513]
 gi|254706648|ref|ZP_05168476.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M163/99/10]
 gi|254710245|ref|ZP_05172056.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           B2/94]
 gi|254714241|ref|ZP_05176052.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
 gi|254717677|ref|ZP_05179488.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
 gi|256031739|ref|ZP_05445353.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M292/94/1]
 gi|256061252|ref|ZP_05451403.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
 gi|256159905|ref|ZP_05457627.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1]
 gi|256255139|ref|ZP_05460675.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94]
 gi|260168872|ref|ZP_05755683.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. F5/99]
 gi|260546634|ref|ZP_05822373.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038]
 gi|260761956|ref|ZP_05874299.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|261219519|ref|ZP_05933800.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
 gi|261222337|ref|ZP_05936618.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94]
 gi|261314108|ref|ZP_05953305.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M163/99/10]
 gi|261317805|ref|ZP_05957002.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           B2/94]
 gi|261322014|ref|ZP_05961211.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
 gi|265988836|ref|ZP_06101393.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M292/94/1]
 gi|294852510|ref|ZP_06793183.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026]
 gi|62196217|gb|AAX74517.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str.
           9-941]
 gi|82616110|emb|CAJ11149.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella
           melitensis biovar Abortus 2308]
 gi|148371645|gb|ABQ61624.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840]
 gi|163674159|gb|ABY38270.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445]
 gi|225617645|gb|EEH14690.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo]
 gi|237788888|gb|EEP63099.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A]
 gi|260095684|gb|EEW79561.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038]
 gi|260672388|gb|EEX59209.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260920921|gb|EEX87574.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94]
 gi|260924608|gb|EEX91176.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
 gi|261294704|gb|EEX98200.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
 gi|261297028|gb|EEY00525.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           B2/94]
 gi|261303134|gb|EEY06631.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M163/99/10]
 gi|264661033|gb|EEZ31294.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M292/94/1]
 gi|294821099|gb|EFG38098.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026]
          Length = 472

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/237 (44%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 53  KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +Y++IV+D N  + +     D  RYPASLTKMMTLY++FE + + +++ +T+IPVS  AA
Sbjct: 44  RYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIHAGRINKDTRIPVSAYAA 103

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++ P+K+  +       E   LA+IT+SANDV+ A GE++ GSE++FA +M+ +A+++GM
Sbjct: 104 SRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGM 163

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT ++NASGL +  Q ++ARD AILG+ LR++FP+ + YFS   F +R + I  HN+LL
Sbjct: 164 RNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFDFRGQTIRGHNRLL 223

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            ++  +DGIKTGYT  SG+N+V+S+      +VAVVMG  T   RD    +LI  +L
Sbjct: 224 GRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLIRKYL 280


>gi|118591083|ref|ZP_01548482.1| hypothetical protein SIAM614_15692 [Stappia aggregata IAM 12614]
 gi|118436159|gb|EAV42801.1| hypothetical protein SIAM614_15692 [Stappia aggregata IAM 12614]
          Length = 561

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 115/244 (47%), Positives = 158/244 (64%), Gaps = 1/244 (0%)

Query: 50  AKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A PKY+ IV+D    + +     D  RYPASLTK+MTLY++FE L++ +L L++ + VS 
Sbjct: 32  ANPKYAGIVVDAKTGKTLYSSSADSYRYPASLTKIMTLYLVFEELEAGRLSLDSNLSVSS 91

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            A+ + PSKL LK       +  ILAL+T+SANDV++   E + GSEKKFA  M+  A++
Sbjct: 92  YASARPPSKLGLKPGGTIKVKDAILALVTKSANDVASVIAENLGGSEKKFAERMTRTARQ 151

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           IGM  T ++N  GL D  Q TTARD A LG  +++ FPQYY YF  R ++Y+ R   NHN
Sbjct: 152 IGMSKTTFRNPHGLPDNGQRTTARDMATLGRAIQERFPQYYGYFKTRAYKYKGRTYGNHN 211

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           KLL ++  +DGIKTGY R SGFN+VTS+      IVAVVMG  T   R+ +  +LI ++L
Sbjct: 212 KLLGRVKGVDGIKTGYIRASGFNLVTSVNRDGRHIVAVVMGGKTGASRNAQMTKLINAYL 271

Query: 289 EKKT 292
            K +
Sbjct: 272 PKAS 275


>gi|254689394|ref|ZP_05152648.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
           str. 870]
 gi|256257640|ref|ZP_05463176.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
           str. C68]
 gi|260883925|ref|ZP_05895539.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
           str. C68]
 gi|297248482|ref|ZP_06932200.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str.
           B3196]
 gi|260873453|gb|EEX80522.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
           str. C68]
 gi|297175651|gb|EFH34998.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str.
           B3196]
          Length = 472

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/237 (44%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 53  KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +Y++IV+D N  + +     D  RYPASLTKMMTLY++FE + + +++ +T+IPVS  AA
Sbjct: 44  RYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIHAGRINKDTRIPVSAYAA 103

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++ P+K+  +       E   LA+IT+SANDV+ A GE++ GSE++FA +M+ +A+++GM
Sbjct: 104 SRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGM 163

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT ++NASGL +  Q ++ARD AILG+ LR++FP+ + YFS   F +R + I  HN+LL
Sbjct: 164 RNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFDFRGQTIRGHNRLL 223

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            ++  +DGIKTGYT  SG+N+V+S+      +VAVVMG  T   RD    +LI  +L
Sbjct: 224 GRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLIRKYL 280


>gi|189024322|ref|YP_001935090.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus
           S19]
 gi|261325261|ref|ZP_05964458.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
 gi|261752478|ref|ZP_05996187.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
           513]
 gi|261758361|ref|ZP_06002070.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99]
 gi|265998302|ref|ZP_06110859.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1]
 gi|189019894|gb|ACD72616.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus
           S19]
 gi|261301241|gb|EEY04738.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
 gi|261738345|gb|EEY26341.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99]
 gi|261742231|gb|EEY30157.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
           513]
 gi|262552770|gb|EEZ08760.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1]
          Length = 461

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/237 (44%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 53  KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +Y++IV+D N  + +     D  RYPASLTKMMTLY++FE + + +++ +T+IPVS  AA
Sbjct: 33  RYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIHAGRINKDTRIPVSAYAA 92

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++ P+K+  +       E   LA+IT+SANDV+ A GE++ GSE++FA +M+ +A+++GM
Sbjct: 93  SRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGM 152

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT ++NASGL +  Q ++ARD AILG+ LR++FP+ + YFS   F +R + I  HN+LL
Sbjct: 153 RNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFDFRGQTIRGHNRLL 212

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            ++  +DGIKTGYT  SG+N+V+S+      +VAVVMG  T   RD    +LI  +L
Sbjct: 213 GRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLIRKYL 269


>gi|256369597|ref|YP_003107107.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915]
 gi|255999759|gb|ACU48158.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915]
          Length = 472

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 106/237 (44%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 53  KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +Y++IV+D N  + +     D  RYPASLTKMMTLY++FE + + +++ +T+IPVS  AA
Sbjct: 44  RYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIHAGRINKDTRIPVSAYAA 103

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++ P+K+  +       E   LA+IT+SANDV+ A GE++ GSE++FA +M+ +A+++GM
Sbjct: 104 SRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGM 163

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT ++NASGL +  Q ++ARD AILG+ LR++FP+ + YFS   F +R + I  HN+LL
Sbjct: 164 RNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFDFRGQTIRGHNRLL 223

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            ++  +DGIKTGYT  SG+N+V+S+      +VAVVMG  T   RD    +LI  +L
Sbjct: 224 GRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLIRKYL 280


>gi|27380267|ref|NP_771796.1| D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium japonicum USDA
           110]
 gi|27353431|dbj|BAC50421.1| blr5156 [Bradyrhizobium japonicum USDA 110]
          Length = 611

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 111/245 (45%), Positives = 160/245 (65%), Gaps = 1/245 (0%)

Query: 52  PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           PK++SI++D N    +     D  R+PASLTK+MTLY++FE L+S K+ L+T++PVS+ A
Sbjct: 57  PKFASIIVDGNSGSVLQATSPDGIRHPASLTKIMTLYLLFERLESGKMKLDTEMPVSQHA 116

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A Q+P+KL L+       E  I  L+TRSAND +    E I+G E  FA +M+ KA+ +G
Sbjct: 117 ADQDPTKLNLRAGQTIRVEDAIKGLVTRSANDAAVVIAEAIAGDEDDFAQMMTRKARSLG 176

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M  T+Y+NA+GL +  Q+TTARDQA LG  +++ FP+YY+YF+   F +R + I NHN L
Sbjct: 177 MSKTVYRNANGLPNDEQVTTARDQATLGRAIQERFPRYYRYFATSTFNWRGQSIRNHNHL 236

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L  +  +DGIKTGYTR SGFN+VTS+R  +  ++ VV+G  +   RD     L+   L+K
Sbjct: 237 LGSVEGVDGIKTGYTRASGFNLVTSMRRGNRHLIGVVLGGRSGGSRDAIMRNLLAENLDK 296

Query: 291 KTLKH 295
               H
Sbjct: 297 GATSH 301


>gi|260565574|ref|ZP_05836058.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
           16M]
 gi|260151642|gb|EEW86736.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
           16M]
 gi|326538900|gb|ADZ87115.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis
           M5-90]
          Length = 461

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 106/237 (44%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 53  KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +Y++IV+D N  + +     D  RYPASLTKMMTLY++FE + + +++ +T+IPVS  AA
Sbjct: 33  RYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIHAGRINKDTRIPVSAYAA 92

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++ P+K+  +       E   LA+IT+SANDV+ A GE++ GSE++FA +M+ +A+++GM
Sbjct: 93  SRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGM 152

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT ++NASGL +  Q ++ARD AILG+ LR++FP+ + YFS   F +R + I  HN+LL
Sbjct: 153 RNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFDFRGQTIRGHNRLL 212

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            ++  +DGIKTGYT  SG+N+V+S+      +VAVVMG  T   RD    +LI  +L
Sbjct: 213 GRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLIRKYL 269


>gi|260754913|ref|ZP_05867261.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
           str. 870]
 gi|260675021|gb|EEX61842.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
           str. 870]
          Length = 461

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 106/237 (44%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 53  KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +Y++IV+D N  + +     D  RYPASLTKMMTLY++FE + + +++ +T+IPVS  AA
Sbjct: 33  RYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIHAGRINKDTRIPVSAYAA 92

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++ P+K+  +       E   LA+IT+SANDV+ A GE++ GSE++FA +M+ +A+++GM
Sbjct: 93  SRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGM 152

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT ++NASGL +  Q ++ARD AILG+ LR++FP+ + YFS   F +R + I  HN+LL
Sbjct: 153 RNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFDFRGQTIRGHNRLL 212

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            ++  +DGIKTGYT  SG+N+V+S+      +VAVVMG  T   RD    +LI  +L
Sbjct: 213 GRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLIRKYL 269


>gi|49475404|ref|YP_033445.1| penicillin-binding protein [Bartonella henselae str. Houston-1]
 gi|49238210|emb|CAF27420.1| Penicillin-binding protein [Bartonella henselae str. Houston-1]
          Length = 449

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 126/279 (45%), Positives = 176/279 (63%), Gaps = 9/279 (3%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKP------KYSSIVIDVNKNQMTGFKQDEP- 74
           I  Q+ ++   KI    +++    S   A P      KY++IVID N  + T F+ +   
Sbjct: 3   IDCQKIVRCYKKIAIAFVVLALSYSWAFATPQEAYPDKYAAIVIDANTGK-TLFQANATL 61

Query: 75  -RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
            RYPASLTKMMTLY++FE +  +++  NT I VS+ AAT+ P+KL LK     + ++   
Sbjct: 62  KRYPASLTKMMTLYLLFEAMHMRRVTPNTPILVSRNAATRPPTKLGLKTGQTISAQEAAK 121

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           ALITRSANDV+TA  E++ G+EKKFA +M+ KA+K+GM NT + NASGL D    +TARD
Sbjct: 122 ALITRSANDVATAIAEYLGGNEKKFARMMTAKARKLGMINTHFANASGLPDVRNYSTARD 181

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            A L + LRK+FPQ YK F I+ F +    +  HNKL+  M  +DGIKTGYT+ SG N+ 
Sbjct: 182 MATLSLALRKHFPQQYKLFKIKSFIFHGHTVNTHNKLVKTMKGVDGIKTGYTQMSGSNLA 241

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           TS+R +   IVAVVMG  +S  RD+    L++ +L K +
Sbjct: 242 TSMRIEGRSIVAVVMGGKSSTARDKHMASLLSQYLPKAS 280


>gi|296534465|ref|ZP_06896895.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis
           ATCC 49957]
 gi|296265208|gb|EFH11403.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis
           ATCC 49957]
          Length = 305

 Score =  229 bits (585), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 107/240 (44%), Positives = 158/240 (65%), Gaps = 1/240 (0%)

Query: 53  KYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +YS+IV+D     ++        RYPASLTKMMTLY++FE +Q  ++ L+T+IPVS+ AA
Sbjct: 44  RYSAIVMDAATGEELVSVNAGASRYPASLTKMMTLYMMFEAMQQGRMTLSTRIPVSRHAA 103

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            Q PSKL LK  +  +    ILAL+T+SANDV+ A  E + GSE +F  LM+ +A+ +GM
Sbjct: 104 GQEPSKLGLKPGSSISARDAILALVTKSANDVAAAVAEHLGGSEVQFGRLMTRRAQSLGM 163

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T ++NASGL D NQ+TTARD A+L   L ++FPQ+Y YF+ R F +R + I +HN++L
Sbjct: 164 RDTSFRNASGLPDANQVTTARDMALLSRALIRHFPQHYAYFNARSFSWRGQTIRSHNRVL 223

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
            +    DG+KTG+ R SGFN+ +S       ++ VV G  TS+ERD   + L     +++
Sbjct: 224 AEYDGADGLKTGFIRASGFNLASSAERGGVRLIVVVFGGATSRERDDHVMALFDRGFQER 283


>gi|114799142|ref|YP_759747.1| putative D-alanyl-D-alanine carboxypeptidase [Hyphomonas neptunium
           ATCC 15444]
 gi|114739316|gb|ABI77441.1| putative D-alanyl-D-alanine carboxypeptidase [Hyphomonas neptunium
           ATCC 15444]
          Length = 442

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 111/251 (44%), Positives = 162/251 (64%), Gaps = 2/251 (0%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQS 95
           +SI    MA   HA+ KY++IV+D +  ++   + QD+PRYPASLTK+MTLY++F+ + +
Sbjct: 19  VSITAAVMAPSAHAE-KYAAIVVDADSGEVLHARNQDDPRYPASLTKVMTLYLLFDAIDA 77

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
             + L  +I VS+ AA Q PS L L+     T E  I AL T+SANDV+ A  EF+ GSE
Sbjct: 78  GDVSLKDKIKVSRNAAAQPPSNLRLRAGDTITVEDAIYALTTKSANDVAAAVAEFLGGSE 137

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           +KFA +M++KA+ +G+ NT ++NASGL D  Q++TARD AIL   L  N   YY YF  +
Sbjct: 138 RKFAAMMTDKARDLGLSNTTFRNASGLPDTAQLSTARDLAILADALLDNHEPYYHYFQNQ 197

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           +F +      +HN L+  +  +DGIKTGYTR SGFN++TS       ++A+V+G  +++ 
Sbjct: 198 RFSWGGMTYKSHNNLIGSVDGVDGIKTGYTRASGFNLMTSAERDGRRVIAIVLGGASAKS 257

Query: 276 RDQKALELITS 286
           RD    EL+ S
Sbjct: 258 RDAHVTELVES 268


>gi|319780264|ref|YP_004139740.1| serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317166152|gb|ADV09690.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 295

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 108/241 (44%), Positives = 157/241 (65%), Gaps = 1/241 (0%)

Query: 53  KYSSIVIDVNKN-QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           KY++IV+D     Q+        RYPASLTKMMTLY++FE L+S ++   TQIPVS  AA
Sbjct: 43  KYAAIVVDARTGKQLFEVSSTAQRYPASLTKMMTLYLLFEALESGRVSKQTQIPVSDHAA 102

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +Q P+K+  +       +  I A++ +SANDV+ A GE++ GSE +FA +M++KA+++GM
Sbjct: 103 SQPPTKMRFRRGESIDVDSAIRAIVVKSANDVAVAVGEYLGGSEDQFAAMMTSKARQLGM 162

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
            +T ++NASGL D  Q+TTARD A+LG+ L + FPQ + YFS   F +R R++  HN +L
Sbjct: 163 TSTTFRNASGLPDDGQMTTARDMAVLGMALHQRFPQQFHYFSESDFMFRGRLVRGHNDML 222

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
            ++  +DGIKTGY R SGFNIVTS       ++ VVMG  ++++R+     LI   L   
Sbjct: 223 GRVRGVDGIKTGYIRASGFNIVTSYNADGRNLIVVVMGADSARQRNDHVEALIQRSLSPT 282

Query: 292 T 292
           T
Sbjct: 283 T 283


>gi|154248459|ref|YP_001419417.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter
           autotrophicus Py2]
 gi|154162544|gb|ABS69760.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter
           autotrophicus Py2]
          Length = 663

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 109/237 (45%), Positives = 161/237 (67%), Gaps = 5/237 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           S+I++D N  ++    +D P   R+PAS+TK+MTLY++FE L++  L L++ + VS  AA
Sbjct: 75  SAIIVDANTGKV--LYEDNPDALRHPASVTKIMTLYLLFEQLEAGNLKLDSDLQVSAKAA 132

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +Q PSKL +K  +    E  I AL+TRSANDV+    E + GSE +FA +M+ KA+ +GM
Sbjct: 133 SQQPSKLGVKPGSAIEVEDAIKALVTRSANDVAVVIAENLGGSESEFAEMMTRKARALGM 192

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
             T+++NASGL + NQ+TTARD +ILG  ++  FP+ YKYF+ R F YR + I NHN+LL
Sbjct: 193 SRTVFRNASGLPNPNQVTTARDLSILGRAIQDRFPKQYKYFATRTFYYRGQAIGNHNRLL 252

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            ++  +DGIKTGYT+ SGFN+VTS++     +V VV+G  ++  RD +   LI+  L
Sbjct: 253 GRVEGVDGIKTGYTQASGFNLVTSVKRDGRFLVGVVLGGSSAGARDARMTNLISQNL 309


>gi|299135167|ref|ZP_07028358.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2]
 gi|298590144|gb|EFI50348.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2]
          Length = 597

 Score =  229 bits (583), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 111/245 (45%), Positives = 152/245 (62%), Gaps = 1/245 (0%)

Query: 52  PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P ++SIV+D N    +     D  R+PASLTK+MTLY++FE L S KL L++Q+ VS+ A
Sbjct: 53  PPFASIVVDANSGATLQSTNADALRHPASLTKIMTLYMLFEQLDSGKLRLDSQLEVSRHA 112

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           + Q P+KL L+       E  I  ++TRSAND +    E I GSE+ F  +M+ KA+ +G
Sbjct: 113 SVQAPTKLGLRPGQTIRVEDAIKGIVTRSANDAAVVVAEAIGGSEENFCKMMTRKARALG 172

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M  T Y NASGL D +QITTARDQA LG  ++  FP YY+YFS   F +R   I NHN L
Sbjct: 173 MSKTTYVNASGLPDDDQITTARDQATLGRAIQDRFPTYYRYFSTSVFTWRGSPIRNHNHL 232

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L +M  +DGIKTGY R SGFN+VT++R  +  +V VV+G  +   RD     L+   L++
Sbjct: 233 LGQMDGVDGIKTGYVRASGFNLVTNIRRGNRHLVGVVLGGRSGGSRDATMRRLLAEHLDE 292

Query: 291 KTLKH 295
              + 
Sbjct: 293 GATRR 297


>gi|254474184|ref|ZP_05087575.1| penicillin-binding protein [Pseudovibrio sp. JE062]
 gi|211956714|gb|EEA91923.1| penicillin-binding protein [Pseudovibrio sp. JE062]
          Length = 485

 Score =  229 bits (583), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 116/265 (43%), Positives = 171/265 (64%), Gaps = 2/265 (0%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLY 87
           Q +G I+ +S+ + +  S   A  KY+ IV+D    + +     +  RYPAS TK+MTLY
Sbjct: 18  QAVG-IIAVSVAIATAPSVAEANSKYAGIVVDAKTGKVLYANNANARRYPASTTKIMTLY 76

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           ++FE L++ ++ LNT++ VS+ AA + P+KL L+       +  I ALIT+SAND ST  
Sbjct: 77  VLFEELEAGRVSLNTKMKVSRYAAGRPPTKLGLRVGGSLRVKDAIYALITKSANDASTVI 136

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E ISGSEK F   M+  A+ IGM+NT ++N  GL +  Q+TTA D A+LG  ++  FP+
Sbjct: 137 AEHISGSEKAFGRRMTQTARAIGMRNTTFRNPHGLPNSKQVTTAADLALLGRAIQDRFPK 196

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           YYKYF+ R + Y  R + NHNKLL ++  +DGIKTGYT  SGFN+VT+++  +  IVAVV
Sbjct: 197 YYKYFNTRSYTYAGRRMGNHNKLLGRVRGVDGIKTGYTNASGFNLVTNVKRDNRQIVAVV 256

Query: 268 MGMPTSQERDQKALELITSFLEKKT 292
           +G  T + RD + ++LI  +L K +
Sbjct: 257 LGGRTGKSRDAQMVKLINQYLPKAS 281


>gi|115525408|ref|YP_782319.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisA53]
 gi|115519355|gb|ABJ07339.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisA53]
          Length = 584

 Score =  229 bits (583), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 109/244 (44%), Positives = 158/244 (64%), Gaps = 1/244 (0%)

Query: 52  PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P ++SI++D N    ++    D  R PASLTK+MTLY++FE L++ KL L++++ VS+ A
Sbjct: 52  PAFASIIVDGNTGATLSANNPDALRRPASLTKIMTLYLLFERLEAGKLSLDSEMDVSEHA 111

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           + Q P+KL L+       E  I AL+TRSAND +    E I G E  FA LM+ KA+ +G
Sbjct: 112 SIQAPTKLGLRPGQTLRVEDAIKALVTRSANDAAVVIAEAIGGDEDDFAKLMTKKARALG 171

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M  T+Y+NASGL + +QITTARDQA LG  +++ FP+YY+YF+   F Y+   I NHN+L
Sbjct: 172 MTRTVYRNASGLPNDDQITTARDQATLGRAIQERFPRYYRYFATSVFVYKGHAIRNHNRL 231

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L  +  +DGIKTGYTR SGFN+V+S+R  +  ++ VV+G  +   RD     L+   L+K
Sbjct: 232 LGSVEGVDGIKTGYTRASGFNLVSSMRRGNRHLIGVVLGGRSGGSRDAAMRSLLAENLDK 291

Query: 291 KTLK 294
              +
Sbjct: 292 AATR 295


>gi|254500491|ref|ZP_05112642.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii
           DFL-11]
 gi|222436562|gb|EEE43241.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii
           DFL-11]
          Length = 558

 Score =  228 bits (582), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 115/266 (43%), Positives = 171/266 (64%), Gaps = 1/266 (0%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTL 86
           I  +GK+L +  +++   +   A PKY+ IV+D    + +     D  R+PASLTK+MT 
Sbjct: 2   IGRLGKMLVVGTLVLCAPTVASANPKYAGIVVDAKTGKTLYAANADAYRFPASLTKIMTT 61

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           YIIFE L++ +L +++++ VSK AA + PSKL LK  +  + +  I AL+T+SANDV+T 
Sbjct: 62  YIIFEELEAGRLSMSSRLKVSKNAAAEVPSKLGLKPGSTISVKDAIGALVTKSANDVATT 121

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E I+GSE  FA  M+  A+++GM  T ++NA GL +  Q TTARD A LG  +++ FP
Sbjct: 122 VAENIAGSEAAFARRMTRTARQLGMSKTTFRNAHGLPNSKQRTTARDMATLGRAIQERFP 181

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           + YK F+ R ++Y+ R + NHN+LL  +  +DGIKTGY R SGFN+VTS++  +  IVAV
Sbjct: 182 ERYKLFNTRVYKYKGRNLRNHNRLLGSVKGVDGIKTGYIRASGFNLVTSVQRNNRHIVAV 241

Query: 267 VMGMPTSQERDQKALELITSFLEKKT 292
           VMG  T   R+    +LI  +L K +
Sbjct: 242 VMGGRTGARRNAHMTDLIGRYLHKAS 267


>gi|306844035|ref|ZP_07476630.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO1]
 gi|306275790|gb|EFM57514.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO1]
          Length = 472

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 105/237 (44%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 53  KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +Y++IV+D N  + +     D  RYPASLTKMMTLY++FE + + +++ +T+IPVS  AA
Sbjct: 44  RYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLYMLFEAIHAGRINKDTRIPVSAYAA 103

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++ P+K+  +       E   LA+IT+SANDV+ A GE++ GSE++FA +M+ +A+++GM
Sbjct: 104 SRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVGEYLGGSEERFAQMMTARARRLGM 163

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           + T ++NASGL +  Q ++ARD AILG+ LR++FP+ + YFS   F +R + I  HN+LL
Sbjct: 164 RKTTFRNASGLPNMAQHSSARDMAILGMALRRHFPREFAYFSRSSFEFRGQTIRGHNRLL 223

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            ++  +DGIKTGYT  SG+N+V+S+      +VAVVMG  T   RD    +LI  +L
Sbjct: 224 GRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVMGGNTGASRDAHMAQLIRKYL 280


>gi|294084619|ref|YP_003551377.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664192|gb|ADE39293.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 437

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 111/235 (47%), Positives = 160/235 (68%), Gaps = 1/235 (0%)

Query: 53  KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           KY+SIVI+    + M     D  RYPASLTK+MTLY++FE ++S ++ +N++I VSK AA
Sbjct: 41  KYASIVINAESGRVMYARNADAMRYPASLTKIMTLYLLFEEIKSGRMDMNSRIGVSKLAA 100

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +++PSKLYLK     + EQ I AL+T+SANDV+TA  E ISG+E+ FA  M+ KA+ +GM
Sbjct: 101 SRSPSKLYLKPGQSISAEQAIYALVTKSANDVATAVAEAISGTERNFAKRMTRKARALGM 160

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           + T++KNASGL    Q TTARD A L + +R++FP+ Y+YFS + F ++ R   NHNKLL
Sbjct: 161 RKTVFKNASGLPHSQQKTTARDMARLAVAMRRDFPRLYRYFSTQNFNWKGRKFGNHNKLL 220

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
                 DGIKTGY   SGFN+V S++     ++ V+ G  TS+ RD   ++++ +
Sbjct: 221 AHYSGTDGIKTGYINASGFNLVASVKRHGVRLIGVIFGGKTSRSRDAHMMKILDA 275


>gi|260461046|ref|ZP_05809295.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium
           opportunistum WSM2075]
 gi|259033080|gb|EEW34342.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium
           opportunistum WSM2075]
          Length = 297

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 107/237 (45%), Positives = 157/237 (66%), Gaps = 2/237 (0%)

Query: 50  AKP-KYSSIVIDVNKN-QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS 107
           A P KY++IV+D     Q+        RYPASLTKMMTLY++FE + S ++   TQIPVS
Sbjct: 40  APPQKYAAIVVDAQTGKQLFEVNSTAQRYPASLTKMMTLYLLFEAMDSGRVTKETQIPVS 99

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
             AA+Q P+K+  +       +  I A++ +SANDV+ A GE++ GSE +FA +M++KA+
Sbjct: 100 DHAASQPPTKMRFRRGETIDVDSAIRAIVVKSANDVAVAVGEYLGGSEDQFAAMMTSKAR 159

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           ++GM +T ++NASGL D +Q+TTARD A+LG+ L   FPQ++ YFS   F +R R++  H
Sbjct: 160 QLGMTSTTFRNASGLPDDSQMTTARDMALLGMALHSRFPQHFHYFSESDFMFRGRLVRGH 219

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N +L ++  +DGIKTGY R SGFNIVTS       ++ VVMG  ++++R+     LI
Sbjct: 220 NDMLGRVRGVDGIKTGYIRASGFNIVTSYNADGRRLIVVVMGADSARQRNDHVEALI 276


>gi|221235180|ref|YP_002517616.1| D-alanyl-D-alanine serine-type carboxypeptidase [Caulobacter
           crescentus NA1000]
 gi|220964352|gb|ACL95708.1| D-alanyl-D-alanine serine-type carboxypeptidase [Caulobacter
           crescentus NA1000]
          Length = 451

 Score =  226 bits (575), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 110/240 (45%), Positives = 158/240 (65%), Gaps = 2/240 (0%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           ++PKY++IVID N  ++   K+ D PRYPAS+TK+MTLY+ FE L   +L L  QI +S 
Sbjct: 59  SEPKYAAIVIDANSGEVLYDKRGDSPRYPASITKVMTLYLTFEALSEGRLKLTDQIVMSP 118

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA Q P+K+ L+     T ++ I A+  +SANDV+TA  E ++GSE +FA LM+ + ++
Sbjct: 119 RAAAQAPTKIGLRPGESMTVDEAIKAMAVKSANDVATAVAERLAGSESRFAALMTLRGQE 178

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           +GM+NT + NASGL D  QI+TARD AIL     ++FPQYY YFS++ F +R   +  HN
Sbjct: 179 LGMRNTRFVNASGLPDSRQISTARDLAILSRATMRDFPQYYSYFSVKGFYFRGNYVKGHN 238

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE-LITSF 287
           +LL+ M   DG+KTGYT  SGFN+  S       ++AVV+G P++  RD    + L+T F
Sbjct: 239 RLLDSMEGFDGLKTGYTNASGFNLAGSAVRDGRRLIAVVLGGPSTAWRDNNMEDLLLTGF 298


>gi|16126400|ref|NP_420964.1| D-alanyl-D-alanine carboxypeptidase [Caulobacter crescentus CB15]
 gi|13423656|gb|AAK24132.1| D-alanyl-D-alanine carboxypeptidase [Caulobacter crescentus CB15]
          Length = 435

 Score =  226 bits (575), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 110/240 (45%), Positives = 158/240 (65%), Gaps = 2/240 (0%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           ++PKY++IVID N  ++   K+ D PRYPAS+TK+MTLY+ FE L   +L L  QI +S 
Sbjct: 43  SEPKYAAIVIDANSGEVLYDKRGDSPRYPASITKVMTLYLTFEALSEGRLKLTDQIVMSP 102

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA Q P+K+ L+     T ++ I A+  +SANDV+TA  E ++GSE +FA LM+ + ++
Sbjct: 103 RAAAQAPTKIGLRPGESMTVDEAIKAMAVKSANDVATAVAERLAGSESRFAALMTLRGQE 162

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           +GM+NT + NASGL D  QI+TARD AIL     ++FPQYY YFS++ F +R   +  HN
Sbjct: 163 LGMRNTRFVNASGLPDSRQISTARDLAILSRATMRDFPQYYSYFSVKGFYFRGNYVKGHN 222

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE-LITSF 287
           +LL+ M   DG+KTGYT  SGFN+  S       ++AVV+G P++  RD    + L+T F
Sbjct: 223 RLLDSMEGFDGLKTGYTNASGFNLAGSAVRDGRRLIAVVLGGPSTAWRDNNMEDLLLTGF 282


>gi|167647108|ref|YP_001684771.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caulobacter sp. K31]
 gi|167349538|gb|ABZ72273.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caulobacter sp. K31]
          Length = 435

 Score =  226 bits (575), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 108/241 (44%), Positives = 155/241 (64%), Gaps = 1/241 (0%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+PKY++IVID N  +M   K+ D PRYPAS+TK+MTLY+ FE L   +L L  ++P + 
Sbjct: 43  AEPKYAAIVIDANSGEMLYDKRADSPRYPASVTKVMTLYLTFEALSEGRLKLTDRVPFTA 102

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA Q P+KL L      + ++ I A+  +SANDV+ A  E + GSE +FA LM+ + ++
Sbjct: 103 RAAAQAPTKLGLPPGDSISVDEAIRAMTVKSANDVAVAMAERLGGSESRFAALMTLRGQE 162

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           +GM+N+ + NASGL D  QI+TARD AIL     ++FPQYY YFSI+ F +R R I  HN
Sbjct: 163 LGMRNSRFVNASGLPDSRQISTARDLAILSRATMRDFPQYYSYFSIKGFEFRGRYIAGHN 222

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +LL  M   DG+KTGYT  SG+N+  S       ++AVV+G  ++  RD    +L+T+  
Sbjct: 223 RLLTNMPGFDGLKTGYTNASGYNLAGSAVRDGRRLIAVVLGGSSTAWRDNNMEDLLTTGF 282

Query: 289 E 289
           +
Sbjct: 283 D 283


>gi|319408389|emb|CBI82044.1| penicillin-binding protein [Bartonella schoenbuchensis R1]
          Length = 449

 Score =  226 bits (575), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 116/244 (47%), Positives = 162/244 (66%), Gaps = 3/244 (1%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEP--RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           KY++IVID +  + T F+ +    RYPASLTKMMTLY++FE ++ +++  NT IP+S  A
Sbjct: 40  KYAAIVIDAHTGK-TLFQANATLKRYPASLTKMMTLYMLFEAMEVRRVTPNTPIPISAYA 98

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A + P+K+  K     + E+   ALIT+SANDV+TA GE++ GSE KFA +M+ KA+K+G
Sbjct: 99  AARPPTKIGFKAGQTISVEEAAKALITKSANDVATAVGEYLGGSEPKFARMMTVKARKLG 158

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M NT + NASGL D    +TA+D A L + LRK+FPQ YK F    F +R + I NHNKL
Sbjct: 159 MTNTRFANASGLPDARNYSTAKDMATLALALRKHFPQQYKLFKTTSFSFRGKTINNHNKL 218

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +  +  +DGIKTGYT+ SG N+ TS+  +   IVAVVMG  +S ERD     L+  +L +
Sbjct: 219 VKTIKGVDGIKTGYTQMSGSNLATSMHIEGRSIVAVVMGGKSSTERDIHMTNLLNRYLPR 278

Query: 291 KTLK 294
            + K
Sbjct: 279 ASRK 282


>gi|163868095|ref|YP_001609299.1| penicillin-binding protein [Bartonella tribocorum CIP 105476]
 gi|161017746|emb|CAK01304.1| penicillin-binding protein [Bartonella tribocorum CIP 105476]
          Length = 449

 Score =  225 bits (574), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 120/260 (46%), Positives = 168/260 (64%), Gaps = 4/260 (1%)

Query: 34  ILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQDEP--RYPASLTKMMTLYIIF 90
           I+ +S    + A+   A P KY++IVID    + T F+ +    RYPASLTKMMTLY++F
Sbjct: 20  IMLVSSYCWAFATPQGAYPDKYAAIVIDATTGK-TLFQANATLKRYPASLTKMMTLYLLF 78

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           E +Q +++  NT IPVS  AA + P+K+  K     + E    ALITRSANDV+TA  E+
Sbjct: 79  EAMQMRRVTPNTPIPVSHYAAMRPPTKIGFKAGQTISAEAAAKALITRSANDVATAIAEY 138

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           + GSEK FA +M+ KA+K+GM++T + NASGL D    +TARD A L + LR++FP+ YK
Sbjct: 139 LGGSEKNFARMMTAKARKLGMKHTHFANASGLPDVQNYSTARDIATLSLALRQHFPKQYK 198

Query: 211 YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
            F  + F +R   I +HNKL+  M  +DGIKTGYT+ SG N+ TS+R +   +VAVVMG 
Sbjct: 199 LFKTKSFNFRGHTINSHNKLVKVMKGVDGIKTGYTQMSGSNLATSMRLEGRSVVAVVMGG 258

Query: 271 PTSQERDQKALELITSFLEK 290
            +S  RD+    L+  +L K
Sbjct: 259 KSSTARDEHMASLLNQYLPK 278


>gi|92112285|ref|YP_572213.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chromohalobacter
           salexigens DSM 3043]
 gi|91795375|gb|ABE57514.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chromohalobacter
           salexigens DSM 3043]
          Length = 413

 Score =  225 bits (573), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 115/275 (41%), Positives = 168/275 (61%), Gaps = 6/275 (2%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMA----SELHAKPKYSSIVIDV-NKNQMTGFKQDEPR 75
           S++ QR  +L+  ++ L +  I++     +E    P+Y+SIVID  N   +     D PR
Sbjct: 3   SLHSQR-ARLLPALILLVVFAIALCTLSVAEAAPNPRYASIVIDTENGAVLHADNADAPR 61

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPASLTKMMTLY++FE ++   L L +++PVS+ AA + PSK+ +        E  I  L
Sbjct: 62  YPASLTKMMTLYLLFEAIEDDTLSLESRLPVSQYAAAKPPSKMGVTPGETVKVEDAINIL 121

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I +SANDV+    E ++GSE  FA  M++KA+ +GM +T ++NASGL D  Q+TTARD A
Sbjct: 122 IVKSANDVAAVVAEGLAGSESVFAGQMTDKARALGMMDTTFRNASGLPDAGQVTTARDMA 181

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           IL + L ++FP YY YF   +F ++ +    HN+LL+     DG+KTGY R SGFN+ TS
Sbjct: 182 ILALRLMQDFPGYYPYFGKTQFTWQGKRYQGHNRLLDSYAGADGLKTGYIRASGFNVATS 241

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
             +    I++VVMG  T+Q RD    EL+ S   +
Sbjct: 242 AVHDGRRILSVVMGGFTAQSRDAHMRELLDSGFAR 276


>gi|75675891|ref|YP_318312.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
           winogradskyi Nb-255]
 gi|74420761|gb|ABA04960.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
           winogradskyi Nb-255]
          Length = 587

 Score =  225 bits (573), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 108/245 (44%), Positives = 157/245 (64%), Gaps = 1/245 (0%)

Query: 52  PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P ++SIV+D N    ++    D  R+PASLTKMMTLY++FE L + ++ L++++ VS  A
Sbjct: 54  PPFASIVVDANSGATLSSTSPDSLRHPASLTKMMTLYMLFERLDAGRIGLDSEMRVSARA 113

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A QNP+KL L+       E  I  L+T+SAND +    E I+G E  FA +M+ KA+ +G
Sbjct: 114 AAQNPTKLGLRPGQTIRVEDAIKGLVTKSANDAAVVIAEAIAGDEDDFARMMTRKARALG 173

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M  T+Y+NASGL D +Q+TTARDQA LG  L+  FP+YY+YF+   F +R R I  HN+L
Sbjct: 174 MTRTVYRNASGLPDDDQVTTARDQATLGRALQDRFPRYYRYFATTSFTFRGRTIRGHNRL 233

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +  +  +DGIKTGY R SGFN+VT+L+  +  +V VV+G  +   RD    +L+   L+K
Sbjct: 234 VGSVDGVDGIKTGYIRASGFNLVTNLKRGNRHLVGVVLGGRSGGSRDATMRKLLAENLDK 293

Query: 291 KTLKH 295
              + 
Sbjct: 294 AATRR 298


>gi|319407377|emb|CBI81028.1| Penicillin-binding protein [Bartonella sp. 1-1C]
          Length = 449

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 120/265 (45%), Positives = 176/265 (66%), Gaps = 8/265 (3%)

Query: 35  LFLSIIMIS----MASELHAKP-KYSSIVIDVNKNQMTGFKQDEP--RYPASLTKMMTLY 87
           + L++++IS    +A+   A P KY++IVID N  + T F+ +    RYPASLTKMMT+Y
Sbjct: 17  IALTVLVISCSWAIATPKEAYPDKYAAIVIDANTGK-TLFQANATLKRYPASLTKMMTVY 75

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           +IFE +++ ++  NT IP+S  AAT+ P+K+ +K     + E    ALIT+SANDV+TA 
Sbjct: 76  MIFEAIKNGRVTPNTPIPISNYAATRPPTKIGIKAGQTISIEAATKALITKSANDVATAI 135

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
           GE++ GSE+KFA +M+ KA+K+GM+NT + NASGL D    +TA+D A L + LR++FP+
Sbjct: 136 GEYLGGSEQKFAQMMTIKARKLGMKNTHFANASGLPDTRNYSTAQDMATLALALRRHFPE 195

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            YK F    F++R + I NHN L+  +  +DGIKTGYT+ SG N+ TS+R     IVAVV
Sbjct: 196 QYKLFKTTHFKFRGKTINNHNTLIKTIKGVDGIKTGYTQMSGSNLATSMRINGRSIVAVV 255

Query: 268 MGMPTSQERDQKALELITSFLEKKT 292
           MG  +S  R+     L+  +L K +
Sbjct: 256 MGGKSSNTRNIHMANLLKQYLPKAS 280


>gi|295690183|ref|YP_003593876.1| serine-type D-Ala-D-Ala carboxypeptidase [Caulobacter segnis ATCC
           21756]
 gi|295432086|gb|ADG11258.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caulobacter segnis ATCC
           21756]
          Length = 433

 Score =  223 bits (567), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 114/273 (41%), Positives = 171/273 (62%), Gaps = 6/273 (2%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMAS---ELHA-KPKYSSIVIDVNKNQMTGFKQ-DEPR 75
           S+ +   + L G    L+    S A    +L+A +PKY++IVID N  ++   K+ D PR
Sbjct: 10  SVLVAAGLALAGLFGALAPTPASAAIPYLQLNASEPKYAAIVIDANSGEVLYDKRADSPR 69

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPAS+TK+MTLY+ FE L   ++ L  ++ +S  AA Q P+K+ L+     + ++ I A+
Sbjct: 70  YPASVTKVMTLYLTFEALSEGRMKLTDRVVMSPRAAAQAPTKIGLRPGDSMSVDEAIKAM 129

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
             +SANDV+ A  E ++GSE +FA LM+ + +++GM+N+ + NASGL D  QI+TARD A
Sbjct: 130 TVKSANDVAVAMAERLAGSESRFAALMTLRGQELGMRNSRFVNASGLPDSRQISTARDLA 189

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           IL   + ++FPQYY YFSIR F +R   +  HN+LL+ M   DG+KTGYT  SGFN+  S
Sbjct: 190 ILSRAIMRDFPQYYSYFSIRGFTFRGNYVKGHNRLLDSMEGFDGLKTGYTNASGFNLAGS 249

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALE-LITSF 287
                  ++AVV+G P++  RD    + L+T F
Sbjct: 250 AVRDGRRLIAVVLGGPSTAWRDNNMEDLLLTGF 282


>gi|240850298|ref|YP_002971691.1| penicillin-binding protein [Bartonella grahamii as4aup]
 gi|240267421|gb|ACS51009.1| penicillin-binding protein [Bartonella grahamii as4aup]
          Length = 449

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 119/261 (45%), Positives = 165/261 (63%), Gaps = 3/261 (1%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP--RYPASLTKMMTLYIIFE 91
           +L  S    S   +     KY++IVID    + T F+ +    RYPASLTKMMTLY++FE
Sbjct: 21  VLAFSYCWASATPQGAYPDKYAAIVIDATTGK-TLFQANATLKRYPASLTKMMTLYLLFE 79

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            +Q +++  NT IPVS  AA + P+K+  K     + E    ALITRSANDV+ A  E++
Sbjct: 80  AMQMRRVTPNTPIPVSHYAAMRPPTKIGFKAGQTISAESAAKALITRSANDVAAAIAEYL 139

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            GSEKKFA +M+ KA+K+GM++T + NASGL D +  +TARD A L + LRK+FP+ YK 
Sbjct: 140 GGSEKKFAQMMTIKARKLGMKHTHFANASGLPDVHNYSTARDIATLSLALRKHFPKQYKL 199

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           F  + F +R   I +HNKL+  M  +DGIKTGYT+ SG N+ TS+R     +VAVVMG  
Sbjct: 200 FKTKSFNFRGHKINSHNKLVKIMKGVDGIKTGYTQMSGSNLATSMRLDGRSVVAVVMGGK 259

Query: 272 TSQERDQKALELITSFLEKKT 292
           +S  RD+    L+  +L K +
Sbjct: 260 SSTARDEHMASLLNQYLPKAS 280


>gi|144898029|emb|CAM74893.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 424

 Score =  222 bits (566), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 116/268 (43%), Positives = 167/268 (62%), Gaps = 3/268 (1%)

Query: 20  GSIYIQRNI-QLMGKILFLSIIMISMASELHAKP-KYSSIVIDV-NKNQMTGFKQDEPRY 76
           G + + R+I  L+G+ L L  I++      HA+  +Y+SIV+D  N N +     D   Y
Sbjct: 12  GPLPLLRHITGLVGRALMLMTILVLAPHTAHARDDRYASIVVDADNGNVLYAVNPDRRSY 71

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MTLY++F+ L+  KL LN+++PVS  A  Q+PSKL LK       E  +L+L+
Sbjct: 72  PASLTKVMTLYLLFDALEQGKLTLNSRMPVSAHATRQSPSKLNLKVGDRIDVEDAVLSLV 131

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
           T+SANDV+    E I GSE  FA +M+ KA+++GM +T Y+NASGL D  QI+T RDQA 
Sbjct: 132 TKSANDVAVVVAEAIGGSEDDFAEMMTRKARQLGMSSTTYRNASGLPDMGQISTPRDQAT 191

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   L K+  +YY YFS R+F ++ + I+ HN+L+ +    DGIKTGY   SGFN++ S 
Sbjct: 192 LARALVKHHGRYYHYFSTRQFNWQGQPISTHNRLMLRYQGADGIKTGYINASGFNLIASA 251

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELI 284
           +     IV VV G  T+  RD    +++
Sbjct: 252 KRDGKRIVGVVFGGNTAGWRDNNMAQIL 279


>gi|163760085|ref|ZP_02167168.1| putative penicillin-binding protein/D-alanyl-D-alanine
           carboxypeptidase [Hoeflea phototrophica DFL-43]
 gi|162282484|gb|EDQ32772.1| putative penicillin-binding protein/D-alanyl-D-alanine
           carboxypeptidase [Hoeflea phototrophica DFL-43]
          Length = 289

 Score =  222 bits (565), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 107/240 (44%), Positives = 157/240 (65%), Gaps = 2/240 (0%)

Query: 53  KYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           KY++IV+D    +M  G   +E RYPASLTKMMT+Y++FE +   ++  +T IP+S+ AA
Sbjct: 48  KYAAIVVDEKSGKMLYGANVNELRYPASLTKMMTVYMLFEAMDQGRISRDTPIPISRNAA 107

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIG 170
            + PSKL LK       +  I  L+ +SANDV+TA GEF+ G SE +FA +M+ KA+ +G
Sbjct: 108 RRPPSKLGLKAGQSIPVDTAIRVLVVKSANDVATAVGEFLGGGSEARFADMMTAKARTLG 167

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M  T +KNASGL D +Q++TA D A L I LR+NFP +Y YF   +     R I  HNK 
Sbjct: 168 MSRTTFKNASGLPDPDQVSTATDMARLSIALRRNFPHHYSYFGQTEVTVAGRTIKGHNKA 227

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +  +   DG+KTGYTR SGFN+ TS+R++   +V VVMG   +  RD +  +L+++++++
Sbjct: 228 MKMIPGADGLKTGYTRASGFNLATSVRHQGKSVVGVVMGEDKASIRDARMTQLMSAYIKR 287


>gi|319404375|emb|CBI77978.1| penicillin-binding protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 449

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 121/281 (43%), Positives = 176/281 (62%), Gaps = 7/281 (2%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQDEP--RYPA 78
            Y +  I L   ++F S    ++A+   A P KY++IVID N  + T F+ +    RYPA
Sbjct: 11  CYKKVGIALTVLVIFCSW---AIATPKEAYPDKYAAIVIDANTGK-TLFQANATLKRYPA 66

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           SLTKMMT+Y+IFE +++ ++  NT IP+S  AAT+ P+K+ +K     + E    ALIT+
Sbjct: 67  SLTKMMTVYMIFEAIKNGRVTPNTPIPISNYAATRPPTKIGIKAGQTISIEAATKALITK 126

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           SANDV+TA GE++ GSE+KFA +M+ KA+ +GM+NT + NASGL D    +TA+D A L 
Sbjct: 127 SANDVATAIGEYLGGSEQKFAQMMTIKARTLGMKNTHFANASGLPDTRNYSTAQDMATLA 186

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
           + LR++FP+ YK F    F +R + I NHN L+  +  +DGIKTGYT+ SG N+ TS+R 
Sbjct: 187 LALRRHFPEQYKLFKTTHFTFRGQTINNHNTLIKTIKGVDGIKTGYTQMSGSNLATSMRI 246

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTH 299
               +VAVVMG  +S  R+     L+  +L K +      H
Sbjct: 247 NGRSVVAVVMGGKSSNTRNIHMANLLKQYLPKASRVESNEH 287


>gi|304391580|ref|ZP_07373522.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Ahrensia sp.
           R2A130]
 gi|303295809|gb|EFL90167.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Ahrensia sp.
           R2A130]
          Length = 480

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 123/297 (41%), Positives = 184/297 (61%), Gaps = 17/297 (5%)

Query: 35  LFLSIIMI-----SMASELHAK------PKYSSIVIDVNKNQMTGFKQD--EPRYPASLT 81
           LFLS  ++      M  +  AK      P+Y++ VID    ++  F ++    RYPASLT
Sbjct: 19  LFLSTFLVLSFQLMMTGDAEAKRKKKGNPRYAAYVIDAKTGKVI-FSRNGNARRYPASLT 77

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           KMMTLY++FE +++ +++  T++ +SK  + Q PSK+ L+     + +Q + +LIT+SAN
Sbjct: 78  KMMTLYLVFEDMKAGRINGKTRLVMSKKGSLQQPSKIGLRAGQSISMDQAVKSLITKSAN 137

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           DV+TA G  +SGSE +FA  M+ KA+++GM  T +KNA+GL  + Q+TTA D A LG+ L
Sbjct: 138 DVATAIGGQLSGSEVEFAKRMTRKARQLGMSRTTFKNANGLTARGQVTTAADMAKLGMAL 197

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           R++FP+ YK FS R F+   R   NHNKLL ++  +DGIKTGYTR SGFN+V+S++    
Sbjct: 198 REHFPRKYKLFSTRVFKLGKRRYGNHNKLLGRVRGVDGIKTGYTRASGFNLVSSVQTGGR 257

Query: 262 PIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKL 318
            IVAVVMG  + + R+     LI   L K +   Q   R+    +T  + S+  KK+
Sbjct: 258 SIVAVVMGGRSGRSRNAHMQTLIKRHLRKASRGKQ---RRVVARATGSRGSVATKKV 311


>gi|296447357|ref|ZP_06889284.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus
           trichosporium OB3b]
 gi|296255136|gb|EFH02236.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus
           trichosporium OB3b]
          Length = 552

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 108/238 (45%), Positives = 153/238 (64%), Gaps = 1/238 (0%)

Query: 52  PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P +++IV+D N  + + G  ++E R+PAS+TK+MTLY++FE L+  +L L++ + +S  A
Sbjct: 80  PAFAAIVVDANTGRTLYGRSENELRHPASITKVMTLYLLFEQLEKGRLRLDSPLVISAHA 139

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A Q+P+KL L        E  I A++T+SAND++ A  E I+G E  FA LM+ KA  +G
Sbjct: 140 AAQSPTKLGLPPGQTIDVENAIKAVVTKSANDIAVAIAENIAGDEDAFAELMTRKAHSLG 199

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M  T Y NASGL +  QITTARD A+LG  ++  FP YY+YFS   F YR +   NHN L
Sbjct: 200 MTRTHYANASGLPNDAQITTARDLAVLGRAIQDRFPHYYRYFSTYSFTYRGQAHRNHNHL 259

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           L ++  +DGIKTGYTR SGFN+++S+R     IVAVV+G  +   RD     LI   +
Sbjct: 260 LGQIEGVDGIKTGYTRASGFNLLSSVRRGGRHIVAVVLGGTSGPSRDHIMAGLIAQHI 317


>gi|114328315|ref|YP_745472.1| D-alanyl-D-alanine serine-type carboxypeptidase [Granulibacter
           bethesdensis CGDNIH1]
 gi|114316489|gb|ABI62549.1| D-alanyl-D-alanine serine-type carboxypeptidase [Granulibacter
           bethesdensis CGDNIH1]
          Length = 456

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/243 (43%), Positives = 156/243 (64%), Gaps = 1/243 (0%)

Query: 53  KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +YSSIV+D N    ++    DE R+PASLTKMMTLY++FE L+ +++ L+  +PVS  AA
Sbjct: 87  RYSSIVVDANTGAVLSASSPDELRHPASLTKMMTLYMLFEALRDRRVSLDDLVPVSGHAA 146

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           + +PSKL L   T  T E+ IL L+T+SAND + A GE + GSE++FA +M+ +A+ +GM
Sbjct: 147 SMSPSKLGLVPGTRLTVEEAILGLVTKSANDAAAAVGEMLGGSEEQFAQMMTIRARALGM 206

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
             T+++NASGL D +QI+TA D A+L   L  +FP  Y+YFS   F +   +I NH+++L
Sbjct: 207 TRTVFRNASGLPDPDQISTAHDMAVLARHLILDFPSEYRYFSTPSFVFHRHVIPNHDRML 266

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
           +     DG+KTGYT  SG N+VTS    D  ++ VV G     ERD     L+ +   ++
Sbjct: 267 SIYPGADGLKTGYTNASGLNLVTSALRSDVRLIGVVFGASNKYERDSHMAALLNAGFRQE 326

Query: 292 TLK 294
            ++
Sbjct: 327 GVQ 329


>gi|110632991|ref|YP_673199.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium
           sp. BNC1]
 gi|110283975|gb|ABG62034.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Chelativorans
           sp. BNC1]
          Length = 287

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 106/239 (44%), Positives = 153/239 (64%), Gaps = 1/239 (0%)

Query: 53  KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           KYSSIV+D    + +  +  D PRYPASLTKMMTLY++FE + S  L   ++I  S  AA
Sbjct: 42  KYSSIVVDAGSGEILHQYAADAPRYPASLTKMMTLYLLFEAIDSGILSPTSRITASAYAA 101

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++ PSKL L+    F  +  ILAL  +SANDV+ A  E + G+E++FA +M+ KA+++GM
Sbjct: 102 SRPPSKLGLRPGDSFDVQTAILALCVKSANDVAAAVAEHLGGTEQQFAGMMTAKARQLGM 161

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T++ NASGL D  Q+TTARD A+L + L   FP +Y  F+ + F +  R I  HN LL
Sbjct: 162 RSTVFTNASGLPDSGQMTTARDMALLALALHNRFPHHYHVFANQSFAHEGRTIKGHNDLL 221

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            ++  +DGIKTGY R SG+NI TS       IV +VMG  T++ R+     L+ ++L +
Sbjct: 222 GRVDGVDGIKTGYIRASGYNIATSAARGRKRIVVIVMGGDTARSRNAHVERLLEAYLPQ 280


>gi|319405849|emb|CBI79481.1| Penicillin-binding protein [Bartonella sp. AR 15-3]
          Length = 449

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 120/261 (45%), Positives = 172/261 (65%), Gaps = 8/261 (3%)

Query: 37  LSIIMIS----MASELHAKP-KYSSIVIDVNKNQMTGFKQDEP--RYPASLTKMMTLYII 89
           L++++IS    +A+   A P KY++IVID N  + T F+ +    RYPASLTKMMT+Y+I
Sbjct: 19  LTLLVISHSWAVATPKEAHPDKYAAIVIDANTGK-TLFQANAALKRYPASLTKMMTVYMI 77

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           FE +++ ++  NT IP+S  AAT+ P+K+ +K     + E    ALIT+SANDV+ A GE
Sbjct: 78  FEAIKNGRVTPNTPIPISNYAATRPPTKIGIKAGQTISIEAATKALITKSANDVAAAIGE 137

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
           ++ GSE+KFA +M+ KA+K+GM+NT + NASGL D    +TA+D A L + LRK+FP+ Y
Sbjct: 138 YLGGSEQKFAQMMTIKARKLGMKNTRFANASGLPDTRNYSTAQDIATLALALRKHFPEQY 197

Query: 210 KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           K F    F +R + I NHN L+  +  +DGIKTGYT+ SG N+ TS+R     IVAVVMG
Sbjct: 198 KLFKTTHFTFRGQTINNHNTLIKTIKGVDGIKTGYTQMSGSNLATSMRIDGRSIVAVVMG 257

Query: 270 MPTSQERDQKALELITSFLEK 290
             +S  R+     L+  +L K
Sbjct: 258 GKSSTTRNIHMANLLKQYLPK 278


>gi|304391426|ref|ZP_07373368.1| penicillin-binding protein [Ahrensia sp. R2A130]
 gi|303295655|gb|EFL90013.1| penicillin-binding protein [Ahrensia sp. R2A130]
          Length = 289

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 102/236 (43%), Positives = 159/236 (67%), Gaps = 1/236 (0%)

Query: 53  KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +Y++IVID    + +   + D  R+PASLTKMMT+Y+ FE L  +++ LN++IPVS  AA
Sbjct: 52  RYAAIVIDAKSGKVLHNTRADAIRFPASLTKMMTMYMAFEALSRRRISLNSEIPVSSYAA 111

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++  SKLYLK       +  + AL  +SANDV+TA  EF+ GSE  FA +M+ +A+ +GM
Sbjct: 112 SKPASKLYLKAGETINVDTALQALAVKSANDVATAMAEFLGGSEATFARMMTARARSLGM 171

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T ++NASGL D+ Q+TTARD A L + L+K +PQY+ YF    F ++ + I  HN++L
Sbjct: 172 RSTTFRNASGLPDRLQVTTARDMATLSLALQKRYPQYFHYFGKSTFVWKGKTIRGHNRVL 231

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
             +   +GIKTGYTR SGFN+ TS++  +  +V V++G  + + R++  +EL+ +F
Sbjct: 232 GMLKGANGIKTGYTRASGFNLATSVKRPNKHLVGVILGEDSGKVRNRHMVELLKAF 287


>gi|323136415|ref|ZP_08071497.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocystis sp. ATCC
           49242]
 gi|322398489|gb|EFY01009.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocystis sp. ATCC
           49242]
          Length = 592

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 110/232 (47%), Positives = 154/232 (66%), Gaps = 1/232 (0%)

Query: 54  YSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +++IV+D N  + +    + E R+PAS+TK+MTLY++FE L+  KL L++ + +S  AA 
Sbjct: 89  FAAIVVDGNSGKTLYARNEHELRHPASVTKVMTLYLLFEQLEKGKLRLDSPLMISSHAAA 148

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           Q PSKL L+     + E  I A++T+SAND++ A  E I G E  FA +M+ KA  +GM+
Sbjct: 149 QAPSKLGLRPGETISVENAIKAVVTKSANDIACAIAENIGGDEHTFAQMMTRKAHALGMR 208

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           NT Y+NASGL D  QITTA D A+LG  ++  FP+YY+YFS   F Y   +  NHN LL 
Sbjct: 209 NTHYENASGLPDPGQITTAYDLAVLGRAIQDRFPRYYRYFSTHSFAYNGALHRNHNHLLG 268

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           ++  +DGIKTGYTR SGFN++TS+R  +  IVAVVMG  T+  RD+    LI
Sbjct: 269 QVEGMDGIKTGYTRASGFNLLTSVRRGNHHIVAVVMGGATAGGRDRIMAGLI 320


>gi|254294362|ref|YP_003060385.1| serine-type D-Ala-D-Ala carboxypeptidase [Hirschia baltica ATCC
           49814]
 gi|254042893|gb|ACT59688.1| Serine-type D-Ala-D-Ala carboxypeptidase [Hirschia baltica ATCC
           49814]
          Length = 322

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 109/256 (42%), Positives = 168/256 (65%), Gaps = 5/256 (1%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
           L LS+ +I+ AS      KY+S VID++  ++   +  D+PR+PAS+TK+MTLY++F+ L
Sbjct: 18  LALSLCVIAPAS----AEKYASYVIDIDTAKVLHSRNADDPRFPASITKVMTLYMVFDAL 73

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           ++ +L L  ++ +S+ A+ Q PSKLYLK     + E  I AL+T+SANDV+    E + G
Sbjct: 74  KAGELMLTDELKISREASKQPPSKLYLKPGETISVETAINALVTKSANDVAVVIAERLGG 133

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           SE +FA LM+ KA+++G++NT +KNASGL +  Q++TA D AILG  + ++   YY YFS
Sbjct: 134 SETRFAALMTAKARQLGLKNTRFKNASGLPNAAQLSTAHDLAILGEAMLRDHADYYDYFS 193

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
             +F+Y      NHNKLL  +  +DGIKTGYTR SGFN++ S       ++AV++G  TS
Sbjct: 194 TTEFKYGRANYKNHNKLLESVRGVDGIKTGYTRASGFNLLASAERDGHRVIAVMLGGATS 253

Query: 274 QERDQKALELITSFLE 289
           + R+    +L+ +  +
Sbjct: 254 KSRNAHVTDLLEAAFD 269


>gi|197104762|ref|YP_002130139.1| D-alanyl-D-alanine carboxypeptidase [Phenylobacterium zucineum
           HLK1]
 gi|196478182|gb|ACG77710.1| D-alanyl-D-alanine carboxypeptidase [Phenylobacterium zucineum
           HLK1]
          Length = 417

 Score =  215 bits (548), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 101/238 (42%), Positives = 158/238 (66%), Gaps = 1/238 (0%)

Query: 53  KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           KY++IV+D    + +   + D PRYPAS+TK+MTLY+ FE L S K+ L+ ++  S  AA
Sbjct: 42  KYAAIVVDAKTGEVLYENRADSPRYPASITKVMTLYLTFEALASGKIDLDDRVVFSPRAA 101

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            Q P+KL ++     + ++ + AL T+SAND + A  E ++G+E++FA LM+ +A+++GM
Sbjct: 102 AQPPTKLGVRAGDSISVDEAMKALATKSANDAAVALAEKLAGTEQRFAALMTLRARELGM 161

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
            +T + NASGL D  Q++TARD AIL   + +++PQYYK FS++ F +R + + NHN LL
Sbjct: 162 TDTNFANASGLPDSRQVSTARDIAILSRAVMRDYPQYYKLFSLQYFNFRGQTMRNHNGLL 221

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           ++M  +DG+KTG+   SGFN+  S       ++AVV+G PTS+ RD  A  L+ +  E
Sbjct: 222 HRMDGVDGLKTGFINASGFNLAASAVRDGRRLIAVVLGGPTSRARDNNAESLLLTGFE 279


>gi|83310217|ref|YP_420481.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum
           AMB-1]
 gi|82945058|dbj|BAE49922.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum
           AMB-1]
          Length = 435

 Score =  215 bits (547), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 108/258 (41%), Positives = 162/258 (62%), Gaps = 4/258 (1%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTL 86
           ++L+   L ++II ++  +E     +Y+SIVID  N + +     D   YPASLTK+MTL
Sbjct: 12  LRLIAVALGVAIIAVAQPAE---AGRYASIVIDAENGSVLHAANPDTRSYPASLTKVMTL 68

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           +++F+ L S ++ L+++   S  AA Q+PSKL L+     + E  ILAL+T+SAND +  
Sbjct: 69  FLLFDELDSGRIRLDSKFTTSAHAAAQSPSKLGLEPGEKISVESLILALVTKSANDAAVV 128

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E + G+E +FA +M+ KA  +GM+NT+Y+NASGL D  Q++T RDQA L   L ++ P
Sbjct: 129 AAEGVGGTETRFAHMMTQKAHALGMRNTVYRNASGLPDTGQVSTVRDQATLARALIRSHP 188

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
            YYKYFS R+F Y  + I  HN+L+ +    DGIKTGY   SGFN+++S +  D  I+ V
Sbjct: 189 GYYKYFSTRQFVYDGQPINTHNRLMLRYQGADGIKTGYIHASGFNLISSAKRGDKRIIGV 248

Query: 267 VMGMPTSQERDQKALELI 284
           V G  T+  RD    +L+
Sbjct: 249 VFGGSTASSRDNHMGQLL 266


>gi|296533026|ref|ZP_06895674.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis
           ATCC 49957]
 gi|296266655|gb|EFH12632.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis
           ATCC 49957]
          Length = 293

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 106/234 (45%), Positives = 156/234 (66%), Gaps = 2/234 (0%)

Query: 53  KYSSIVIDVNK-NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +Y+++VI+ N  N + G   D PR+PASLTKMMTLY++F+ L++ +L L+ ++ +++TAA
Sbjct: 34  RYAAVVIEPNSGNVLFGANADAPRHPASLTKMMTLYMVFDALRAGRLELDQRLEMTETAA 93

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI-SGSEKKFAILMSNKAKKIG 170
           ++ PSKL L      T E  I AL+T+SANDV+   GE + +GSE +FA +M+ +A+ +G
Sbjct: 94  SRPPSKLGLPPGRTITVENAIYALVTKSANDVAALLGETLGAGSEARFAQMMTLRARAMG 153

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M +T ++NASGL D  QITTA D A LG  L  +FP+ Y YF  R  R  +  + NHN++
Sbjct: 154 MTSTTFRNASGLPDVEQITTAHDMATLGRRLLHDFPERYHYFGTRTHRMGSIALRNHNRM 213

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           L++   +DGIKTGY  +SGFNIVTS R  +  +V  V G  +  ERD+ A  L+
Sbjct: 214 LDEYEGVDGIKTGYINDSGFNIVTSARRSNVRLVVAVFGGSSWVERDRHAAALL 267


>gi|304321612|ref|YP_003855255.1| D-alanyl-D-alanine carboxypeptidase [Parvularcula bermudensis
           HTCC2503]
 gi|303300514|gb|ADM10113.1| D-alanyl-D-alanine carboxypeptidase [Parvularcula bermudensis
           HTCC2503]
          Length = 423

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 107/256 (41%), Positives = 164/256 (64%), Gaps = 5/256 (1%)

Query: 33  KILFLSIIMISMASEL--HAKPKYSSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYI 88
           K L ++II  ++ S L  HA PKY++ +I  +   +  F +   EPRYPASLTKMMTLY+
Sbjct: 9   KSLLITIIFATVLSPLAAHANPKYAAYIIHADTGDVL-FDRYSTEPRYPASLTKMMTLYL 67

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           +FE ++  ++   T + VSK A+ Q  SKL +K  T    +  I AL+ +SANDV+T   
Sbjct: 68  LFEAIEEGRVSRTTDMKVSKRASLQPASKLGVKSGTTIDVDTAIRALVIKSANDVATVTA 127

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E ++GSE KFA LM+ KA+ +GM+ T+++NASGL D  Q+TTARD AIL   L ++FP +
Sbjct: 128 EHLAGSEAKFARLMTQKARDLGMRQTVFRNASGLPDDRQVTTARDMAILSQRLVQDFPDF 187

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           + YF    F++  R   +HNK+   +   DG+KTGYTR SG+N+ T++R  D  ++ +V+
Sbjct: 188 FHYFDDDSFQWGGRTYKSHNKVTQDLKGADGLKTGYTRASGYNLATTVRRGDHRLIGIVL 247

Query: 269 GMPTSQERDQKALELI 284
           G  + + R+   +E++
Sbjct: 248 GGRSGRTRNAHMIEIM 263


>gi|46201033|ref|ZP_00055930.2| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 419

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 103/233 (44%), Positives = 150/233 (64%), Gaps = 1/233 (0%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +Y+SIVID     +      + R YPASLTK+MTL+++F+ L S ++ ++++   S  AA
Sbjct: 20  RYASIVIDAQTGSVLHAANPDARSYPASLTKVMTLFLLFDELDSGRIRMDSKFTASAHAA 79

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            Q+PSKL L+     + E  ILAL+T+SAND +    E + G+E KFA +M+ KA+ +GM
Sbjct: 80  AQSPSKLGLEPGETISVENLILALVTKSANDAAVVAAEGVGGTESKFAQMMTRKAQALGM 139

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT+Y+NASGL D  Q++T RDQAIL   L ++ P YYKYFS R+F Y  + I  HN+L+
Sbjct: 140 RNTVYRNASGLPDTGQVSTVRDQAILARALIRSHPGYYKYFSTRQFVYEGQPINTHNRLM 199

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +    DGIKTGY   SGFN+++S +  D  I+ VV G  T+  RD    +L+
Sbjct: 200 LRYQGADGIKTGYIHASGFNLISSAKRGDQRIIGVVFGGATATSRDNHMAQLL 252


>gi|53803228|ref|YP_115023.1| D-alanyl-D-alanine carboxypeptidase [Methylococcus capsulatus str.
           Bath]
 gi|53756989|gb|AAU91280.1| putative D-alanyl-D-alanine carboxypeptidase [Methylococcus
           capsulatus str. Bath]
          Length = 362

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 109/232 (46%), Positives = 150/232 (64%), Gaps = 2/232 (0%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E  A P YS++V++V  +++   +  DE R+PASLTKMMTLY++FE L   ++ L     
Sbjct: 25  EAVAAP-YSALVMEVESDRVLYERNADEIRHPASLTKMMTLYLVFEALVQGRISLYDTFY 83

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
            S  AA+++PS++ L+     T E+GILAL+T SAND +   GE ++GSE  FA +M+ K
Sbjct: 84  ASSYAASRSPSRIGLRPGDPLTVEEGILALVTCSANDAAATLGEGLAGSEPAFAAMMTRK 143

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
           A+++GM  T+++NASGL D  Q+TTARD   LG  L K+FPQYY YFS  +F+YR R   
Sbjct: 144 ARELGMSQTVFRNASGLPDPEQVTTARDMYRLGKALLKHFPQYYPYFSTSRFQYRGRSFH 203

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           NHN LL   +  DGIKTG+   SGFN+V S R     +V VV G  +S  RD
Sbjct: 204 NHNHLLENYYGADGIKTGFVNASGFNLVASARRNGVRLVGVVFGGNSSFRRD 255


>gi|209548202|ref|YP_002280119.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209533958|gb|ACI53893.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 427

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 104/263 (39%), Positives = 165/263 (62%), Gaps = 3/263 (1%)

Query: 33  KILFLSIIMISMA--SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
           + L  +++ +++A  + L A    +S+V+D    ++   +  D   +PASLTKMMTLY+ 
Sbjct: 2   RTLLAAVLTVTLAVSAPLAALAGSASLVLDARTGKVLAAENADTLNHPASLTKMMTLYLT 61

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           FE L+  K+  +T I +SK AA++ P+KL +K     T  + +  +I +SAND ++A GE
Sbjct: 62  FEALKRGKIAWDTPIKMSKYAASRPPTKLGVKAGGTITVREAVYGMIIKSANDAASAMGE 121

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            + GSE  FA +M+ KA+++GM  T++ NASGL D  Q+TTARD + L I L KN+P  Y
Sbjct: 122 KLGGSESGFARMMTAKARQLGMSRTVFVNASGLPDGRQVTTARDMSTLAIALMKNYPNEY 181

Query: 210 KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           + FS+  F +R R +  HN L+ +   +DGIKTGYT  SGFN+V+++R  +  +V VV+G
Sbjct: 182 RLFSVASFNFRGRTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVVGVVLG 241

Query: 270 MPTSQERDQKALELITSFLEKKT 292
             T++ RD K   L+  +L + +
Sbjct: 242 GRTARSRDDKMAGLLDRYLGRAS 264


>gi|258541378|ref|YP_003186811.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256632456|dbj|BAH98431.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256635513|dbj|BAI01482.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256638568|dbj|BAI04530.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256641622|dbj|BAI07577.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256644677|dbj|BAI10625.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256647732|dbj|BAI13673.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256650785|dbj|BAI16719.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256653776|dbj|BAI19703.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 382

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 112/254 (44%), Positives = 160/254 (62%), Gaps = 8/254 (3%)

Query: 29  QLMGKILFLSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEP---RYPASLTKM 83
           + +G +  L++   +   + HA+   + SSIV+D     +    QD+P   RYPASLTK+
Sbjct: 25  KWVGLLAGLAVGTTATYGKAHAQYAGQLSSIVVDARTGAV--LSQDDPDLRRYPASLTKL 82

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MTLY+ F  L++  + L+  +PVS  A+T  PSKL L   ++ T EQ ILAL+T+SAND 
Sbjct: 83  MTLYMTFNALRAGAISLDQAVPVSIHASTMEPSKLGLVPGSHLTVEQAILALVTKSANDA 142

Query: 144 STAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
           + A GE I G SE +FA +M+ +A  +GM NT ++NASGL D +Q+TTARD + LG  L 
Sbjct: 143 ACALGELIGGGSEPQFAAMMTQQAHYLGMSNTTFRNASGLPDPDQMTTARDLSTLGRRLI 202

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
            +FP+YY YFS   F +  RII NHN +L      DG+KTGYT+ +G N+VTS    +  
Sbjct: 203 SDFPEYYHYFSTPYFSFHRRIIPNHNPMLKVYAGADGMKTGYTQEAGRNLVTSAIRDNVR 262

Query: 263 IVAVVMGMPTSQER 276
           +V VVMG  ++ +R
Sbjct: 263 LVGVVMGASSNTQR 276


>gi|329114967|ref|ZP_08243722.1| D-alanyl-D-alanine carboxypeptidase DacF [Acetobacter pomorum
           DM001]
 gi|326695410|gb|EGE47096.1| D-alanyl-D-alanine carboxypeptidase DacF [Acetobacter pomorum
           DM001]
          Length = 382

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 112/254 (44%), Positives = 160/254 (62%), Gaps = 8/254 (3%)

Query: 29  QLMGKILFLSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEP---RYPASLTKM 83
           + +G +  L++   +   + HA+   + SSIV+D     +    QD+P   RYPASLTK+
Sbjct: 25  KWVGLLAGLAVGTTATYGKAHAQYAGQLSSIVVDARTGAV--LSQDDPDLRRYPASLTKL 82

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MTLY+ F  L++  + L+  +PVS  A+T  PSKL L   ++ T EQ ILAL+T+SAND 
Sbjct: 83  MTLYMTFNALRAGAISLDQAVPVSIHASTMEPSKLGLVPGSHLTVEQAILALVTKSANDA 142

Query: 144 STAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
           + A GE I G SE +FA +M+ +A  +GM NT ++NASGL D +Q+TTARD + LG  L 
Sbjct: 143 ACALGELIGGGSEPQFAAMMTQQAHYLGMSNTTFRNASGLPDPDQMTTARDLSTLGRRLI 202

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
            +FP+YY YFS   F +  RII NHN +L      DG+KTGYT+ +G N+VTS    +  
Sbjct: 203 ADFPEYYHYFSTPYFSFHRRIIPNHNPMLKVYAGADGMKTGYTQEAGRNLVTSAIRDNVR 262

Query: 263 IVAVVMGMPTSQER 276
           +V VVMG  ++ +R
Sbjct: 263 LVGVVMGASSNTQR 276


>gi|239831909|ref|ZP_04680238.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium
           LMG 3301]
 gi|239824176|gb|EEQ95744.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium
           LMG 3301]
          Length = 426

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 104/237 (43%), Positives = 154/237 (64%), Gaps = 6/237 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           S +V D +  ++ G  QD+      PASL KMMTLY+ FE L++ +LH +  +P+SK AA
Sbjct: 54  SWVVFDADSGRILG--QDDANIQHAPASLAKMMTLYLAFEALKTGRLHWDDAMPISKNAA 111

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++   KL+LK     T    I  +I  SAND +T  GE+++GSE  F  LM+ +A++IGM
Sbjct: 112 SKVRMKLWLKPGETITVHDAIYGMIVISANDAATVMGEYMAGSEAAFGRLMTQRARQIGM 171

Query: 172 QNTIYKNASGLHDK-NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           ++T + N SGL  K  Q+TTARD AILG+ LR++FP+ Y  FS R F +RNR++  HN L
Sbjct: 172 KSTFFVNPSGLTAKATQLTTARDMAILGMSLRRDFPEQYALFSTRSFTFRNRVLNGHNTL 231

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           + +   +DGIKTGYT  SG+N+V+S    D  +V VV+G  ++++RD +  +L+T F
Sbjct: 232 MYRYQGVDGIKTGYTDVSGYNLVSSAIINDKHLVGVVLGAGSARQRDDQMAKLLTRF 288


>gi|83593448|ref|YP_427200.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodospirillum rubrum
           ATCC 11170]
 gi|83576362|gb|ABC22913.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodospirillum rubrum
           ATCC 11170]
          Length = 468

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 103/252 (40%), Positives = 159/252 (63%), Gaps = 1/252 (0%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEY 92
           +  L+++ + +     A   Y+SIV+D +  ++   +  + R YPASLTKMMTLY++FE 
Sbjct: 28  LAMLAVVFLLLGLPTQAFAGYASIVVDASTGRVLQARNADMRNYPASLTKMMTLYLLFEA 87

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           + + K  L +++PVSK AA Q PSKL +   T    E  I AL+T+SANDV+    E + 
Sbjct: 88  IDNGKYTLESRLPVSKWAANQAPSKLGVAAGTGIKVEHAIKALVTKSANDVAVVIAEALG 147

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           G+E  F+ LM+ KA  +GM  T ++NASGL +  Q+TTARD A+L + L ++FP +Y++F
Sbjct: 148 GTEANFSALMTRKAAALGMSQTTFRNASGLPNNGQMTTARDMAVLSMALIRHFPNHYRFF 207

Query: 213 SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           + + FR+ NR IT HN ++ +    DG+KTGY + SGFN+ +S       +VAVV G  T
Sbjct: 208 ATQSFRFGNRTITTHNHVVREYPGADGLKTGYIQASGFNVASSAVRNGRRLVAVVFGGQT 267

Query: 273 SQERDQKALELI 284
           ++ RD + + L+
Sbjct: 268 ARARDTQMMALL 279


>gi|153009485|ref|YP_001370700.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi
           ATCC 49188]
 gi|151561373|gb|ABS14871.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi
           ATCC 49188]
          Length = 404

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 106/242 (43%), Positives = 157/242 (64%), Gaps = 6/242 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           S +V D +  ++ G  QD+    R PASL KMMTLY+ FE L++ +LH +  +PVSK AA
Sbjct: 32  SWVVFDADSGRILG--QDDANVQRAPASLAKMMTLYLAFEGLKTGRLHWDDAMPVSKNAA 89

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            +   KL+LK     T    I  +I  SAND +T  GE+I+GSE  F  LM+ +A++IGM
Sbjct: 90  AKVRMKLWLKPGETITVRDAINGMIIVSANDAATVMGEYIAGSEAAFGRLMTQRARQIGM 149

Query: 172 QNTIYKNASGLHDKN-QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           ++T + N SGL  K+ Q+TTARD A+LG+ LR++FP+ Y+ FS R F +R+R+   HN L
Sbjct: 150 KSTFFVNPSGLTAKSTQLTTARDMAVLGMSLRRDFPEQYELFSQRSFTFRDRVRNGHNNL 209

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           + +   +DGIKTGYT  SG+N+V+S    D  +V VV+G  ++++RD +  +L+T F  +
Sbjct: 210 MYRYQGVDGIKTGYTDVSGYNLVSSAVINDKHLVGVVLGAGSARQRDDQMAKLLTRFGTE 269

Query: 291 KT 292
            T
Sbjct: 270 GT 271


>gi|241203383|ref|YP_002974479.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240857273|gb|ACS54940.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 427

 Score =  211 bits (538), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 103/261 (39%), Positives = 165/261 (63%), Gaps = 3/261 (1%)

Query: 35  LFLSIIMISMA--SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFE 91
           L+ +++ +++A  + L A    +S+++D    ++   +  D   +PASLTKMMTLY+ FE
Sbjct: 4   LWAAVLTVTLAVSAPLAALAGNASLILDARTGKVLAAENADTLNHPASLTKMMTLYLTFE 63

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            L+  K+  +T I +SK AA++ P+KL +K     T  + +  +I +SAND ++A GE +
Sbjct: 64  ALKRGKIAWDTPIKMSKYAASRPPTKLGVKAGGTITVREAVYGMIVKSANDAASAMGEKL 123

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  FA +M+ KA+++GM  T++ NASGL D  Q+TTARD + L I L KN+P  Y+ 
Sbjct: 124 AGSESGFARVMTAKARQLGMSRTVFVNASGLPDGRQVTTARDMSTLAIALMKNYPNEYRL 183

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           FS   F +R R +  HN L+ +   +DGIKTGYT  SGFN+V+++R  +  +V VV+G  
Sbjct: 184 FSTASFNFRGRTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVVGVVLGGR 243

Query: 272 TSQERDQKALELITSFLEKKT 292
           T++ RD K   L+  +L + +
Sbjct: 244 TARSRDAKMAGLLDRYLGRAS 264


>gi|163797884|ref|ZP_02191828.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium BAL199]
 gi|159176846|gb|EDP61414.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium BAL199]
          Length = 421

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 104/239 (43%), Positives = 153/239 (64%), Gaps = 1/239 (0%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           KY+++V+D +   +   +Q    R+PASLTK+MTLY++F+ ++  K+ LN ++ VS  AA
Sbjct: 34  KYAALVLDADTGTILFERQAAAERHPASLTKIMTLYMLFDAIEHGKISLNQRLKVSARAA 93

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            Q PSKL L+       +  ILAL+T+SANDV+    E +  +E +FA LM+++A+++GM
Sbjct: 94  GQAPSKLGLQPGDSIRAKDAILALVTKSANDVAVVVAEALGETEPRFARLMTDRARRLGM 153

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT ++NASGLH  NQI+TA D A+L + +R++FP+ Y YFS R F +  R   NHNKLL
Sbjct: 154 RNTTFRNASGLHHPNQISTAYDMAMLALAIRRDFPKEYAYFSTRSFSWGGREYGNHNKLL 213

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                 DGIKTGY   SGFN+V S+      ++ VV G  +   RD+    L+TS  EK
Sbjct: 214 GHYEGTDGIKTGYIGASGFNLVASVERNGRRLIGVVFGGRSGPLRDRHMKRLLTSGFEK 272


>gi|182678644|ref|YP_001832790.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182634527|gb|ACB95301.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 563

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 104/231 (45%), Positives = 149/231 (64%), Gaps = 1/231 (0%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++IV+D N    +    + E R+PAS+TK+MTLY++FE L+   L L++ I VS  AA Q
Sbjct: 77  AAIVVDANSGHTLYAHGEHELRHPASITKVMTLYLLFEQLEQGHLRLDSAIHVSPHAAAQ 136

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
            P+KL L   +  + E  I A++TRSAND++ A  E + G E+ FA +M+ KA  +GM  
Sbjct: 137 KPTKLGLHAGSSISVEDAIRAVVTRSANDMAVAIAETVGGDEETFAGMMTRKAHMLGMSR 196

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           T ++NASGL +  Q+TTA D AILG  ++  FP+YY YFS   F Y  + I NHN LL++
Sbjct: 197 THFENASGLPNDAQVTTAHDLAILGRAIQDRFPRYYPYFSTHVFHYAGQEIRNHNHLLDQ 256

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +  +DGIKTGYTR SGFN++TS++     IVA V+G  ++  RD+    LI
Sbjct: 257 VEGMDGIKTGYTRASGFNLLTSVKRGGHSIVAAVLGGVSAGARDRIMARLI 307


>gi|159185157|ref|NP_355279.2| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein)
           [Agrobacterium tumefaciens str. C58]
 gi|159140428|gb|AAK88064.2| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein)
           [Agrobacterium tumefaciens str. C58]
          Length = 431

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 99/252 (39%), Positives = 161/252 (63%), Gaps = 3/252 (1%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEY 92
           + F   I+   AS   A+  Y+  ++D N  ++   +  D   +PASLTKMMTLY+ FE 
Sbjct: 17  LTFFCAILSLQASP--AQAGYAHFIMDANTGKVLAARNADVLNHPASLTKMMTLYMTFEA 74

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           L + +L  + +I +SK  A+  PSKLY+++   FT  + +  +I +SAND++   G+ + 
Sbjct: 75  LHAGRLRWDQKITMSKNGASVIPSKLYVRQGQTFTVREAVYGMIVKSANDMAEGMGDHLG 134

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           GSE +FA +M+ KA+++GM  T+++NASGL  K+Q+TTARD A LG+ L+++FP+ Y  F
Sbjct: 135 GSEARFAEMMTRKARQLGMSKTVFRNASGLPSKSQVTTARDMARLGLALQRDFPKEYGLF 194

Query: 213 SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           ++  F +R + I  HN L+ +   +DGIKTGYT  SGFN+V+++ +    +V VV+G  T
Sbjct: 195 AMESFSFRGKRIRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAINHNGRRVVGVVLGGKT 254

Query: 273 SQERDQKALELI 284
           ++ RD +   L+
Sbjct: 255 ARSRDAQMAALL 266


>gi|261214059|ref|ZP_05928340.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
           str. Tulya]
 gi|260915666|gb|EEX82527.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
           str. Tulya]
          Length = 416

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/237 (43%), Positives = 155/237 (65%), Gaps = 6/237 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           S +V D +  +M G  QD+      PASL KMMTLY+ FE L++ +LH +  +P+SK AA
Sbjct: 45  SWVVFDADSGRMLG--QDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAA 102

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++   KL+LK     +T   +  +I  SAND +T  GE+++GSE  FA LM+ +A++IGM
Sbjct: 103 SKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGM 162

Query: 172 QNTIYKNASGL-HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           ++TI+ N SGL  + +Q+TTARD A+LG+ LR++FP+ Y  FS R F +R R+   HN L
Sbjct: 163 KSTIFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNNL 222

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           + +   +DGIKTGYT  SG+N+V+S    +  +V VV+G  ++ +RD +  +L+T F
Sbjct: 223 MYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQMAKLLTRF 279


>gi|306843944|ref|ZP_07476539.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO1]
 gi|306275699|gb|EFM57423.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO1]
          Length = 397

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 102/237 (43%), Positives = 155/237 (65%), Gaps = 6/237 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           S +V D +  +M G  QD+      PASL KMMTLY+ FE L++ +LH +  +P+SK AA
Sbjct: 32  SWVVFDADSGRMLG--QDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAA 89

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++   KL+LK     +T   +  +I  SAND +T  GE+++GSE  FA LM+ +A++IGM
Sbjct: 90  SKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGM 149

Query: 172 QNTIYKNASGL-HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           ++TI+ N SGL  + +Q+TTARD A+LG+ LR++FP+ Y  FS R F +R R+   HN L
Sbjct: 150 KSTIFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNNL 209

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           + +   +DGIKTGYT  SG+N+V+S    +  +V VV+G  ++ +RD +  +L+T F
Sbjct: 210 MYRYAGVDGIKTGYTNVSGYNLVSSAYINNKHLVGVVLGAGSAGQRDGQMAKLLTRF 266


>gi|116250789|ref|YP_766627.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255437|emb|CAK06513.1| putative D-alanyl-D-alanine carboxypeptidase (penicillin-binding
           protein) [Rhizobium leguminosarum bv. viciae 3841]
          Length = 464

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 106/273 (38%), Positives = 168/273 (61%), Gaps = 6/273 (2%)

Query: 26  RNIQLMGKI---LFLSIIMISMA--SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           R   + GK    L  +++ +++A  + L A    +S+++D    ++   +  D   +PAS
Sbjct: 29  RGQGMRGKCMRKLLAAVLTVTLAVSAPLAALAGNASLILDARTGKVLASENADTLNHPAS 88

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LTKMMTLY+ FE L+  K+  +T I +SK AA++ P+KL +K     T  + +  +I +S
Sbjct: 89  LTKMMTLYLTFEALKRGKITWDTPIKMSKYAASRPPTKLGVKAGGTITVREAVYGMIVKS 148

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AND ++A GE ++GSE  FA +M+ KA+++GM  T++ NASGL D  Q+TTARD + L I
Sbjct: 149 ANDAASAMGEKLAGSESGFARVMTAKARQLGMSRTVFVNASGLPDGRQVTTARDMSTLAI 208

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            L KN+P  Y+ FS   F +R R +  HN L+ +   +DGIKTGYT  SGFN+V+++R  
Sbjct: 209 ALMKNYPNEYRLFSTASFNFRGRTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDG 268

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +  +V VV+G  T++ RD K   L+  +L + +
Sbjct: 269 NRRVVGVVLGGRTARSRDAKMAGLLDRYLGRAS 301


>gi|154253237|ref|YP_001414061.1| Serine-type D-Ala-D-Ala carboxypeptidase [Parvibaculum
           lavamentivorans DS-1]
 gi|154157187|gb|ABS64404.1| Serine-type D-Ala-D-Ala carboxypeptidase [Parvibaculum
           lavamentivorans DS-1]
          Length = 558

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 118/280 (42%), Positives = 167/280 (59%), Gaps = 3/280 (1%)

Query: 6   IQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQ 65
           +Q SA  +F     G         L+   LFL   ++  A    A PK +++VID    +
Sbjct: 1   MQGSAPTSFARISLGRSKSSGGFCLI--CLFLLFGLLVAAPVQAAAPKEAALVIDAYSGK 58

Query: 66  MT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKT 124
           +      DE RYPASLTK+MTLY++FE LQ+ ++ L ++I ++   A   PSKL L+   
Sbjct: 59  VLYARSADEYRYPASLTKVMTLYLLFEKLQAGEVTLKSRITMTPRGAGMPPSKLGLRAGQ 118

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
             + E  ILAL+TRSANDV++A G FI+G+E  FA LM+ KA+ +GM  T YKNASGL +
Sbjct: 119 TLSVEDAILALVTRSANDVASATGAFIAGTEDDFAALMTKKARALGMTRTTYKNASGLPN 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGY 244
             Q TTARDQA L   +R++FPQYY YFS   F +    I NHN+LL +     G+KTGY
Sbjct: 179 SAQKTTARDQATLAKRIREDFPQYYHYFSTEYFAWGKARIRNHNRLLGEYKGTTGLKTGY 238

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           T  SGFN+  ++   +  ++ VVMG   ++ RD   +E++
Sbjct: 239 TNASGFNLTATVERDNKFLIGVVMGGKQAKLRDAHMIEIL 278


>gi|306838136|ref|ZP_07470992.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NF 2653]
 gi|306406726|gb|EFM62949.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NF 2653]
          Length = 397

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 102/237 (43%), Positives = 154/237 (64%), Gaps = 6/237 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           S +V D +  +M G  QD+      PASL KMMTLY+ FE L++ +LH +  +P+SK AA
Sbjct: 32  SWVVFDADSGRMLG--QDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAA 89

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++   KL+LK     +T   +  +I  SAND +T  GE+++GSE  FA LM+ +A++IGM
Sbjct: 90  SKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGM 149

Query: 172 QNTIYKNASGLHDK-NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           ++TI+ N SGL    +Q+TTARD A+LG+ LR++FP+ Y  FS R F +R R+   HN L
Sbjct: 150 KSTIFANPSGLTASVSQLTTARDMAVLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNNL 209

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           + +   +DGIKTGYT  SG+N+V+S    +  +V VV+G  ++ +RD +  +L+T F
Sbjct: 210 MYRYAGVDGIKTGYTNVSGYNLVSSAYINNKHLVGVVLGAGSAGQRDGQMAKLLTRF 266


>gi|189024230|ref|YP_001934998.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus
           S19]
 gi|189019802|gb|ACD72524.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus
           S19]
          Length = 397

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 102/237 (43%), Positives = 155/237 (65%), Gaps = 6/237 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           S +V D +  +M G  QD+      PASL KMMTLY+ FE L++ +LH +  +P+SK AA
Sbjct: 32  SWVVFDADSGRMLG--QDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAA 89

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++   KL+LK     +T   +  +I  SAND +T  GE+++GSE  FA LM+ +A++IGM
Sbjct: 90  SKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGM 149

Query: 172 QNTIYKNASGL-HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           ++TI+ N SGL  + +Q+TTARD A+LG+ LR++FP+ Y  FS R F +R R+   HN L
Sbjct: 150 KSTIFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNNL 209

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           + +   +DGIKTGYT  SG+N+V+S    +  +V VV+G  ++ +RD +  +L+T F
Sbjct: 210 MYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQMAKLLTRF 266


>gi|62289988|ref|YP_221781.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str.
           9-941]
 gi|82699916|ref|YP_414490.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis biovar
           Abortus 2308]
 gi|225627545|ref|ZP_03785582.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo]
 gi|237815492|ref|ZP_04594490.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A]
 gi|254689296|ref|ZP_05152550.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 6 str.
           870]
 gi|254697432|ref|ZP_05159260.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254701819|ref|ZP_05163647.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis bv. 5 str. 513]
 gi|254706741|ref|ZP_05168569.1| D-alanyl-D-alanine carboxypeptidase [Brucella pinnipedialis
           M163/99/10]
 gi|254710152|ref|ZP_05171963.1| D-alanyl-D-alanine carboxypeptidase [Brucella pinnipedialis B2/94]
 gi|254714151|ref|ZP_05175962.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti M644/93/1]
 gi|254716791|ref|ZP_05178602.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti M13/05/1]
 gi|254730330|ref|ZP_05188908.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 4 str.
           292]
 gi|256031647|ref|ZP_05445261.1| D-alanyl-D-alanine carboxypeptidase [Brucella pinnipedialis
           M292/94/1]
 gi|256159791|ref|ZP_05457534.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti M490/95/1]
 gi|256255049|ref|ZP_05460585.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti B1/94]
 gi|256257546|ref|ZP_05463082.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 9 str.
           C68]
 gi|256369499|ref|YP_003107007.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915]
 gi|260168777|ref|ZP_05755588.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. F5/99]
 gi|260545262|ref|ZP_05821003.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038]
 gi|260754808|ref|ZP_05867156.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
           str. 870]
 gi|260758030|ref|ZP_05870378.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
           str. 292]
 gi|260761853|ref|ZP_05874196.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260883826|ref|ZP_05895440.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
           str. C68]
 gi|261218589|ref|ZP_05932870.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
 gi|261222240|ref|ZP_05936521.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94]
 gi|261314205|ref|ZP_05953402.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M163/99/10]
 gi|261317706|ref|ZP_05956903.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           B2/94]
 gi|261321914|ref|ZP_05961111.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
 gi|261752376|ref|ZP_05996085.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
           513]
 gi|261758258|ref|ZP_06001967.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99]
 gi|265988739|ref|ZP_06101296.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M292/94/1]
 gi|265998204|ref|ZP_06110761.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1]
 gi|297248388|ref|ZP_06932106.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str.
           B3196]
 gi|62196120|gb|AAX74420.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str.
           9-941]
 gi|82616017|emb|CAJ11050.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella
           melitensis biovar Abortus 2308]
 gi|225617550|gb|EEH14595.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo]
 gi|237790329|gb|EEP64539.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A]
 gi|255999659|gb|ACU48058.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915]
 gi|260096669|gb|EEW80544.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038]
 gi|260668348|gb|EEX55288.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
           str. 292]
 gi|260672285|gb|EEX59106.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260674916|gb|EEX61737.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
           str. 870]
 gi|260873354|gb|EEX80423.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
           str. C68]
 gi|260920824|gb|EEX87477.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94]
 gi|260923678|gb|EEX90246.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
 gi|261294604|gb|EEX98100.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
 gi|261296929|gb|EEY00426.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           B2/94]
 gi|261303231|gb|EEY06728.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M163/99/10]
 gi|261738242|gb|EEY26238.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99]
 gi|261742129|gb|EEY30055.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
           513]
 gi|262552672|gb|EEZ08662.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1]
 gi|264660936|gb|EEZ31197.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M292/94/1]
 gi|297175557|gb|EFH34904.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str.
           B3196]
          Length = 410

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 102/237 (43%), Positives = 155/237 (65%), Gaps = 6/237 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           S +V D +  +M G  QD+      PASL KMMTLY+ FE L++ +LH +  +P+SK AA
Sbjct: 45  SWVVFDADSGRMLG--QDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAA 102

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++   KL+LK     +T   +  +I  SAND +T  GE+++GSE  FA LM+ +A++IGM
Sbjct: 103 SKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGM 162

Query: 172 QNTIYKNASGL-HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           ++TI+ N SGL  + +Q+TTARD A+LG+ LR++FP+ Y  FS R F +R R+   HN L
Sbjct: 163 KSTIFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNNL 222

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           + +   +DGIKTGYT  SG+N+V+S    +  +V VV+G  ++ +RD +  +L+T F
Sbjct: 223 MYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQMAKLLTRF 279


>gi|23501950|ref|NP_698077.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330]
 gi|161619022|ref|YP_001592909.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC
           23365]
 gi|254704362|ref|ZP_05166190.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
           686]
 gi|260566392|ref|ZP_05836862.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40]
 gi|261755034|ref|ZP_05998743.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
           686]
 gi|23347896|gb|AAN29992.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330]
 gi|161335833|gb|ABX62138.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC
           23365]
 gi|260155910|gb|EEW90990.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40]
 gi|261744787|gb|EEY32713.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
           686]
          Length = 410

 Score =  209 bits (532), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 102/237 (43%), Positives = 155/237 (65%), Gaps = 6/237 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           S +V D +  +M G  QD+      PASL KMMTLY+ FE L++ +LH +  +P+SK AA
Sbjct: 45  SWVVFDADSGRMLG--QDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAA 102

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++   KL+LK     +T   +  +I  SAND +T  GE+++GSE  FA LM+ +A++IGM
Sbjct: 103 SKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGM 162

Query: 172 QNTIYKNASGL-HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           ++TI+ N SGL  + +Q+TTARD A+LG+ LR++FP+ Y  FS R F +R R+   HN L
Sbjct: 163 KSTIFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNNL 222

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           + +   +DGIKTGYT  SG+N+V+S    +  +V VV+G  ++ +RD +  +L+T F
Sbjct: 223 MYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQKAKLLTRF 279


>gi|58039077|ref|YP_191041.1| D-alanyl-D-alanine carboxypeptidase [Gluconobacter oxydans 621H]
 gi|58001491|gb|AAW60385.1| D-alanyl-D-alanine carboxypeptidase [Gluconobacter oxydans 621H]
          Length = 348

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 110/255 (43%), Positives = 157/255 (61%), Gaps = 7/255 (2%)

Query: 36  FLSIIMISMASELHAKPKY----SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIF 90
           FL   M +M     AK +Y    SS V+D     +      E  RYPASLTK+MTLY+ F
Sbjct: 9   FLLCAMTAMGLG-SAKAQYAGHISSYVMDARTGAVLSATDAELQRYPASLTKLMTLYLTF 67

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             L++ ++ L+ Q+PVS  A+ Q PSKL L   T  T EQGIL L+T+SAND + A GEF
Sbjct: 68  RALEAHQITLDEQVPVSIHASVQAPSKLGLVPGTRLTVEQGILGLVTKSANDAACALGEF 127

Query: 151 ISGS-EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
           + G  E +FA LM+ +A+ +GM NT ++NASGL D +Q+TTA D A+L   L  +FPQYY
Sbjct: 128 LGGGDEVRFAQLMTQQARALGMTNTTFRNASGLPDPDQVTTAHDLALLSQHLISDFPQYY 187

Query: 210 KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            YF++  F +  R++ NH+ +L      DG+KTGYT  +G N++TS +  +  ++ VVMG
Sbjct: 188 HYFNVPSFYFHRRMVPNHDPMLKIYAGADGLKTGYTDLAGHNLITSAQRGNVRLIGVVMG 247

Query: 270 MPTSQERDQKALELI 284
            P +  R  + + L+
Sbjct: 248 APNNTRRSMEMVSLL 262


>gi|254719144|ref|ZP_05180955.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. 83/13]
 gi|265984138|ref|ZP_06096873.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
 gi|264662730|gb|EEZ32991.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
          Length = 410

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 102/237 (43%), Positives = 154/237 (64%), Gaps = 6/237 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           S +V D +  +M G  QD+      PASL KMMTLY+ FE L++ +LH +  +P+SK AA
Sbjct: 45  SWVVFDADSGRMLG--QDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAA 102

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++   KL+LK     +T   +  +I  SAND +T  GE+++GSE  FA LM+ +A++IGM
Sbjct: 103 SKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGM 162

Query: 172 QNTIYKNASGLHDK-NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           ++TI+ N SGL    +Q+TTARD A+LG+ LR++FP+ Y  FS R F +R R+   HN L
Sbjct: 163 KSTIFANPSGLTASVSQLTTARDMAVLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNNL 222

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           + +   +DGIKTGYT  SG+N+V+S    +  +V VV+G  ++ +RD +  +L+T F
Sbjct: 223 MYRYAGVDGIKTGYTNVSGYNLVSSAYINNKHLVGVVLGAGSAGQRDGQMAKLLTRF 279


>gi|163843338|ref|YP_001627742.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445]
 gi|163674061|gb|ABY38172.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445]
          Length = 410

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 102/237 (43%), Positives = 155/237 (65%), Gaps = 6/237 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           S +V D +  +M G  QD+      PASL KMMTLY+ FE L++ +LH +  +P+SK AA
Sbjct: 45  SWVVFDADSGRMLG--QDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAA 102

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++   KL+LK     +T   +  +I  SAND +T  GE+++GSE  FA LM+ +A++IGM
Sbjct: 103 SKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGM 162

Query: 172 QNTIYKNASGL-HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           ++TI+ N SGL  + +Q+TTARD A+LG+ LR++FP+ Y  FS R F +R R+   HN L
Sbjct: 163 KSTIFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNNL 222

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           + +   +DGIKTGYT  SG+N+V+S    +  +V VV+G  ++ +RD +  +L+T F
Sbjct: 223 MYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQKAKLLTRF 279


>gi|306841800|ref|ZP_07474484.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO2]
 gi|306288114|gb|EFM59506.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO2]
          Length = 370

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 102/237 (43%), Positives = 155/237 (65%), Gaps = 6/237 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           S +V D +  +M G  QD+      PASL KMMTLY+ FE L++ +LH +  +P+SK AA
Sbjct: 5   SWVVFDADSGRMLG--QDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAA 62

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++   KL+LK     +T   +  +I  SAND +T  GE+++GSE  FA LM+ +A++IGM
Sbjct: 63  SKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGM 122

Query: 172 QNTIYKNASGL-HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           ++TI+ N SGL  + +Q+TTARD A+LG+ LR++FP+ Y  FS R F +R R+   HN L
Sbjct: 123 KSTIFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNNL 182

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           + +   +DGIKTGYT  SG+N+V+S    +  +V VV+G  ++ +RD +  +L+T F
Sbjct: 183 MYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQMAKLLTRF 239


>gi|256061158|ref|ZP_05451311.1| D-alanyl-D-alanine carboxypeptidase [Brucella neotomae 5K33]
 gi|261325163|ref|ZP_05964360.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
 gi|261301143|gb|EEY04640.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
          Length = 410

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 100/235 (42%), Positives = 154/235 (65%), Gaps = 2/235 (0%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S +V D +  +M G      ++ PASL KMMTLY+ FE L++ +LH +  +P+SK AA++
Sbjct: 45  SWVVFDADSGRMLGRDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAASK 104

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
              KL+LK     +T   +  +I  SAND +T  GE+++GSE  FA LM+ +A++IGM++
Sbjct: 105 VRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGMKS 164

Query: 174 TIYKNASGL-HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           TI+ N SGL  + +Q+TTARD A+LG+ LR++FP+ Y  FS R F +R R+   HN L+ 
Sbjct: 165 TIFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNNLMY 224

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           +   +DGIKTGYT  SG+N+V+S    +  +V VV+G  ++ +RD +  +L+T F
Sbjct: 225 RYAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQMAKLLTRF 279


>gi|218680753|ref|ZP_03528650.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli CIAT 894]
          Length = 427

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 101/263 (38%), Positives = 163/263 (61%), Gaps = 3/263 (1%)

Query: 33  KILFLSIIMISMA--SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
           + L  +++ +++A  + + A    +S+++D    ++   +  D   +PASLTKMMTLY+ 
Sbjct: 2   RTLLAAVLTVTLAVSAPIAALAGSASLILDARTGKVLAAENADTLNHPASLTKMMTLYLT 61

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           FE L+  K+  +T I +SK AA + P+KL +K     T  + +  +I +SAND ++A GE
Sbjct: 62  FEALKRGKIAWDTPITMSKYAAARPPTKLGVKAGGTITVREAVYGMIIKSANDAASAMGE 121

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            + GSE  FA +M+ KA+++GM  T++ NASGL D  Q+TTARD + L + L KN+P  Y
Sbjct: 122 KLGGSESGFARMMTAKARQLGMSRTVFVNASGLPDGRQVTTARDMSTLAVALMKNYPNEY 181

Query: 210 KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           + FS   F +R R +  HN L+ +   +DGIKTGYT  SGFN+V+++R  +  +V VV+G
Sbjct: 182 RLFSAASFNFRGRTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVVGVVLG 241

Query: 270 MPTSQERDQKALELITSFLEKKT 292
             T++ RD K   L+  +L + +
Sbjct: 242 GRTARSRDDKMAGLLDRYLGRAS 264


>gi|83945500|ref|ZP_00957847.1| D-alanyl-D-alanine carboxypeptidase [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851076|gb|EAP88934.1| D-alanyl-D-alanine carboxypeptidase [Oceanicaulis alexandrii
           HTCC2633]
          Length = 418

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 105/253 (41%), Positives = 150/253 (59%), Gaps = 1/253 (0%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYL 93
           L   + + ++ S   A  +Y++ V D+   + +   + D  RYPASLTKMMTLY++FE L
Sbjct: 8   LLCVLSVFALTSRAEASERYAAFVADMETGEVLHSRRADAERYPASLTKMMTLYMLFEAL 67

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           +  ++ L+  I  S  AA++  SKL L+       E  I ALI +SANDV+ A  E +  
Sbjct: 68  ERGEVSLDDAITASAEAASRPSSKLGLRAGQTIRVEDAIRALIIQSANDVAVAVAEHLQD 127

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
            E +FA +M+ +A+++GM NT+++NASGL D  Q TTARD A L   L ++FPQYY YF 
Sbjct: 128 DEARFAAVMTLRARELGMTNTVFRNASGLPDAAQHTTARDVARLAYALHEDFPQYYHYFG 187

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
             +FR+      NHN L+     +DG+KTGY R SGFN+  S       I+AVVMG  ++
Sbjct: 188 ETRFRWNGVTHRNHNSLVGNQAGVDGLKTGYIRASGFNLAASAERDGHRIIAVVMGGVSA 247

Query: 274 QERDQKALELITS 286
             RD  A ELI +
Sbjct: 248 SVRDAHARELIEA 260


>gi|325982052|ref|YP_004294454.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrosomonas sp. AL212]
 gi|325531571|gb|ADZ26292.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrosomonas sp. AL212]
          Length = 415

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 105/251 (41%), Positives = 159/251 (63%), Gaps = 3/251 (1%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYL 93
           +FL ++++S ++   A P+YSSIVID +    +     D  RYPASLTKMMTLY++FE +
Sbjct: 17  IFLLLLIVSDSA--LANPRYSSIVIDADTGAVLHESNADANRYPASLTKMMTLYMLFEAM 74

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           + +K+ ++T++PVS  AA    + + L+     +    I ALI RSANDV+    E +  
Sbjct: 75  EQRKMTVDTRMPVSTHAAAMPQTNIGLRTGDSISVRDAIPALIVRSANDVAAVVAEALGK 134

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           SE  F  +M++KA+++GM++T ++NASGL +  Q TTARD   L   L K+FP+YY YFS
Sbjct: 135 SEANFGRMMTDKARQLGMRSTTFRNASGLPNLEQKTTARDMVTLSTRLMKDFPKYYHYFS 194

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            + F Y+     +HN+++     +DG+KTG+ R SGFN+ TS +  +  +VAVVMG  T+
Sbjct: 195 TQSFSYKGITYNSHNRMVRNTSGVDGLKTGFIRASGFNVATSAKRGNRRVVAVVMGGNTA 254

Query: 274 QERDQKALELI 284
             RDQ   +LI
Sbjct: 255 AARDQHMAQLI 265


>gi|325293678|ref|YP_004279542.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3]
 gi|325061531|gb|ADY65222.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3]
          Length = 433

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 98/252 (38%), Positives = 160/252 (63%), Gaps = 3/252 (1%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEY 92
           + F   I+   AS   A+  Y+  ++D N  ++   +  D   +PASLTKMMTLY+ FE 
Sbjct: 17  LAFFCAILSLQASP--AQAGYAHFIMDANTGKVLAAQNADVLNHPASLTKMMTLYMTFEA 74

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           L + ++  + +I +S+  A   PSKLY++E   FT  + +  +I +SAND++   G+ + 
Sbjct: 75  LHAGRIRWDQKIRMSRNGAAVIPSKLYVREGQTFTVREAVYGMIVKSANDMAEGMGDHLG 134

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           GSE +FA +M+ KA+++GM  T+++NASGL  K+Q+TTARD A LG+ L+++FP+ Y  F
Sbjct: 135 GSEAQFAQMMTRKARQLGMTKTVFRNASGLPSKSQVTTARDMAKLGLALQRDFPKEYGLF 194

Query: 213 SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           ++  F +R + I  HN L+ +   +DGIKTGYT  SGFN+V+++ +    +V VV+G  T
Sbjct: 195 AMESFSFRGKRIRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAINHNGRRVVGVVLGGKT 254

Query: 273 SQERDQKALELI 284
           ++ RD +   L+
Sbjct: 255 ARGRDAQMAALL 266


>gi|294852342|ref|ZP_06793015.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026]
 gi|294820931|gb|EFG37930.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026]
          Length = 410

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 101/237 (42%), Positives = 154/237 (64%), Gaps = 6/237 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           S +V D +  +M G  QD+      PASL KMMTLY+ FE L++ +LH +  +P+SK AA
Sbjct: 45  SWVVFDADSGRMLG--QDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAA 102

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++   KL+LK     +T   +  +I  SAND +T  GE+++GSE  FA LM+ +A++IGM
Sbjct: 103 SKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGM 162

Query: 172 QNTIYKNASGL-HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           ++TI+ N SGL  + +Q+TTARD A+LG+ LR++FP+ Y  FS   F +R R+   HN L
Sbjct: 163 KSTIFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYALFSQCSFTFRGRVYNGHNNL 222

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           + +   +DGIKTGYT  SG+N+V+S    +  +V VV+G  ++ +RD +  +L+T F
Sbjct: 223 MYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQMAKLLTRF 279


>gi|227821091|ref|YP_002825061.1| putative D-alanyl-D-alanine carboxypeptidase [Sinorhizobium fredii
           NGR234]
 gi|227340090|gb|ACP24308.1| putative D-alanyl-D-alanine carboxypeptidase [Sinorhizobium fredii
           NGR234]
          Length = 417

 Score =  206 bits (523), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 109/268 (40%), Positives = 166/268 (61%), Gaps = 6/268 (2%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMM 84
           RN+Q+      L+ I+  +A+   A    +S VID    + ++    DE  YPASLTKMM
Sbjct: 2   RNLQIA-----LAAIVAFVAATASAFAGSASFVIDARSGRVLSAENADELNYPASLTKMM 56

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TLY+ FE L   +++  T +P+SK AA + P+KL LK  +  T E+ +  +I  SAND +
Sbjct: 57  TLYLTFEALHRGEINWQTPVPMSKEAARKPPTKLGLKPGSAITVEEAVYGMIIHSANDAA 116

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  E + GSE  FA +M+ KA+++GM  T++ NASGL    Q+TTARD A LG+ L ++
Sbjct: 117 AAMAEKLGGSEAAFAQMMTAKARRLGMTRTVFVNASGLPASQQVTTARDMAKLGMALLRD 176

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           FP+ Y+ FS + F +R R++  HNKL+ +   +DGIKTGYT  SGFN+V+++R  +  ++
Sbjct: 177 FPREYRLFSAQSFNFRGRVVRGHNKLMYRYDGMDGIKTGYTNASGFNLVSAVRDGNRRVI 236

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKT 292
            VV+G  T++ RD K   L+   L + +
Sbjct: 237 GVVLGGRTAKSRDNKMAALLDQHLGRPS 264


>gi|241204910|ref|YP_002976006.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240858800|gb|ACS56467.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 292

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 101/241 (41%), Positives = 151/241 (62%), Gaps = 1/241 (0%)

Query: 50  AKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   +S V+DV   Q + G  QD+  YPASLTKMMTLY+ FE L   +L+ + ++ +S+
Sbjct: 26  AQAGQASFVVDVQSGQVLEGSNQDDLNYPASLTKMMTLYLAFEALHDGRLNWDQKLTMSE 85

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            A ++ P KL +      T  + +  ++  SAND + A  E + GSE+ FA  M++KA +
Sbjct: 86  NAESKEPFKLAVGAGRKVTLREAVEGIVVLSANDAAVAIAEQLGGSEQVFAKAMTDKAHQ 145

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           +GM++T++KN SGL D  Q+TTARD A LG+ L ++FP+ +K FS+R F++R   +  HN
Sbjct: 146 LGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRDFPEEFKLFSMRGFQFRGMKLRGHN 205

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            L+ +   +DGIKTGYT  SG+N+VTS       +V VVMG  T+  RD K   L+ S L
Sbjct: 206 NLMYRYDGVDGIKTGYTDASGYNVVTSALKDGRRVVGVVMGEKTASIRDDKMASLLDSTL 265

Query: 289 E 289
           +
Sbjct: 266 Q 266


>gi|218662722|ref|ZP_03518652.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli IE4771]
          Length = 289

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 102/252 (40%), Positives = 157/252 (62%), Gaps = 4/252 (1%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSK 96
           +++M ++A    A+   +S V+DV   Q +    QD+  YPASLTKMMTLY+ FE L   
Sbjct: 16  ALLMCAVA---QAEAGQASFVLDVQSGQVLEASNQDDLNYPASLTKMMTLYLAFEALHDG 72

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           +L  + ++ +S+ A ++ P KL +      T  + + +++  SAND + A  E + GSE+
Sbjct: 73  RLTWDQKLTMSENAESKEPFKLAVGAGRKVTLREAVESIVVLSANDSAVAIAEQLGGSEQ 132

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            FA  M++KA+++GM++T++KN SGL D  Q+TTARD A LG+ L ++FP+ +K FS+R 
Sbjct: 133 AFARTMTDKARQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRDFPEEFKLFSMRG 192

Query: 217 FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           F++R   +  HN L+ +   +DGIKTGYT  SG+N+VTS       +V VVMG  T+  R
Sbjct: 193 FQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKGGRRVVGVVMGEKTAGLR 252

Query: 277 DQKALELITSFL 288
           D K   L+ S L
Sbjct: 253 DDKMAGLLDSTL 264


>gi|254693780|ref|ZP_05155608.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein [Brucella
           abortus bv. 3 str. Tulya]
          Length = 361

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/212 (44%), Positives = 144/212 (67%), Gaps = 1/212 (0%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASL KMMTLY+ FE L++ +LH +  +P+SK AA++   KL+LK     +T   +  +I
Sbjct: 13  PASLAKMMTLYLTFEALKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMI 72

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL-HDKNQITTARDQA 195
             SAND +T  GE+++GSE  FA LM+ +A++IGM++TI+ N SGL  + +Q+TTARD A
Sbjct: 73  IVSANDAATVMGEYLAGSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMA 132

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           +LG+ LR++FP+ Y  FS R F +R R+   HN L+ +   +DGIKTGYT  SG+N+V+S
Sbjct: 133 VLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSS 192

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
               +  +V VV+G  ++ +RD +  +L+T F
Sbjct: 193 AYINNRHLVGVVLGAGSAGQRDGQMAKLLTRF 224


>gi|327190645|gb|EGE57733.1| putative D-alanyl-D-alanine carboxypeptidase protein [Rhizobium
           etli CNPAF512]
          Length = 290

 Score =  202 bits (513), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 104/258 (40%), Positives = 156/258 (60%), Gaps = 3/258 (1%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQ 94
             S ++IS  ++  A+   +S V+DV   Q +    QD+  YPASLTKMMTLY+ FE L 
Sbjct: 13  LWSALLISAFAQ--AEAGQASFVVDVRSGQVLEASNQDDLNYPASLTKMMTLYLAFEALH 70

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
             +L    ++ +S+ A ++ P KL +      T  + + +++  SAND + A  E + GS
Sbjct: 71  QGRLTWEQKLTMSENAESKEPFKLAIGAGRQVTLREAVESIVVLSANDSAVAIAEQLGGS 130

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           E+ FA  M++KA ++GM++T++KN SGL D  Q+TTARD A LG+ L ++FP+ +K FS+
Sbjct: 131 EQAFARAMTDKAHQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRDFPEEFKLFSM 190

Query: 215 RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           R F++R   +  HN L+ +   +DGIKTGYT  SG+N+VTS       +V VVMG  T+ 
Sbjct: 191 RGFQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKGGRRVVGVVMGEKTAS 250

Query: 275 ERDQKALELITSFLEKKT 292
            RD K   L+ S L   T
Sbjct: 251 IRDDKMAGLLDSTLSPST 268


>gi|116252402|ref|YP_768240.1| D-alanyl-D-alanine carboxypeptidase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257050|emb|CAK08144.1| putative D-alanyl-D-alanine carboxypeptidase [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 291

 Score =  201 bits (512), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 98/235 (41%), Positives = 148/235 (62%), Gaps = 1/235 (0%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +S V+DV   Q + G  QD+  YPASLTKMMTLY+ FE L   +L+ + ++ +S+ A ++
Sbjct: 30  ASFVVDVQSGQVLEGSNQDDLNYPASLTKMMTLYLAFEALHDGRLNWDQKLTMSENAESK 89

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
            P KL +      T  + +  ++  SAND + A  E + G+E+ FA  M++KA ++GM++
Sbjct: 90  EPFKLAVGAGRKVTLREAVEGIVVLSANDAAVAIAEQLGGTEQVFAKAMTDKAHQLGMKD 149

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           T+++N SGL D  Q+TTARD A LG+ L ++FP+ +K FS+R F++R   +  HN L+ +
Sbjct: 150 TVFRNPSGLPDPEQVTTARDMATLGVSLMRDFPEEFKLFSMRGFQFRGMKLRGHNNLMYR 209

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
              +DGIKTGYT  SG+N+VTS       +V VVMG  T+  RD K   L+ S L
Sbjct: 210 YDGVDGIKTGYTDASGYNVVTSALKDGRRVVGVVMGEKTASIRDDKMASLLDSTL 264


>gi|254505026|ref|ZP_05117177.1| D-alanyl-D-alanine carboxypeptidase superfamily [Labrenzia
           alexandrii DFL-11]
 gi|222441097|gb|EEE47776.1| D-alanyl-D-alanine carboxypeptidase superfamily [Labrenzia
           alexandrii DFL-11]
          Length = 299

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 99/248 (39%), Positives = 149/248 (60%), Gaps = 1/248 (0%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSK 96
           S+ ++S A     +  +S++V++    Q +     D PR+PASLTKMMTLY++FE + S 
Sbjct: 45  SLPVVSYAPATAQERGFSALVLNAATGQELYAVNADAPRFPASLTKMMTLYMLFESVSSG 104

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           +  L++ + +S  AA+Q P+K+ LK  +  + EQ   AL  +SANDV  A  E ++GSE 
Sbjct: 105 ENRLSSPLNISANAASQPPAKIGLKAGSTISVEQAARALAVKSANDVGVAVAENLAGSEA 164

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            FA  M+ KA+ +G+  T + NA+GL D  Q+TTARD A LG+ L++ FPQY  Y+  + 
Sbjct: 165 AFAREMTQKARALGLSRTRFVNATGLPDPAQVTTARDMAKLGLALKRRFPQYASYYRAKS 224

Query: 217 FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           F Y  R     N LL K+  +DG+KTGY R SG+N+V + R     ++ VV+G  +   R
Sbjct: 225 FTYNGRTFRATNNLLGKVQGVDGLKTGYVRMSGYNLVATARRGGKQLIVVVIGGQSETAR 284

Query: 277 DQKALELI 284
           D +   LI
Sbjct: 285 DAEVTRLI 292


>gi|190892030|ref|YP_001978572.1| D-alanyl-D-alanine carboxypeptidase [Rhizobium etli CIAT 652]
 gi|218516887|ref|ZP_03513727.1| probable D-alanyl-D-alanine carboxypeptidase protein [Rhizobium
           etli 8C-3]
 gi|190697309|gb|ACE91394.1| probable D-alanyl-D-alanine carboxypeptidase protein [Rhizobium
           etli CIAT 652]
          Length = 290

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 100/245 (40%), Positives = 149/245 (60%), Gaps = 1/245 (0%)

Query: 49  HAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS 107
            A+   +S V+D    Q +    QD+  YPASLTKMMTLY+ FE L   +L    ++ +S
Sbjct: 24  QAEAGQASFVVDAQSGQVLEASNQDDLNYPASLTKMMTLYLAFEALHQGRLTWEQKLTMS 83

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
           + A ++ P KL +      T  + + +++  SAND + A  E + GSE+ FA  M++KA+
Sbjct: 84  ENAESKEPFKLAIGAGRQVTLREAVESIVVLSANDSAVAIAEQLGGSEQAFAKAMTDKAR 143

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           ++GM++T++KN SGL D  Q+TTARD A LG+ L ++FP+ +K FS+R F++R   +  H
Sbjct: 144 QLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRDFPEEFKLFSMRGFQFRGMKLRGH 203

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           N L+ +   +DGIKTGYT  SG+N+VTS       +V VVMG  T+  RD K   L+ S 
Sbjct: 204 NNLMYRYDGVDGIKTGYTDASGYNVVTSALKGGRRVVGVVMGEKTAGLRDDKMAGLLDST 263

Query: 288 LEKKT 292
           L   T
Sbjct: 264 LSPST 268


>gi|218461037|ref|ZP_03501128.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli Kim 5]
          Length = 294

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 100/242 (41%), Positives = 151/242 (62%), Gaps = 1/242 (0%)

Query: 48  LHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
           + A+   +S V+DV   Q +    QD+  YPASLTKMMTLY+ FE L   +L  + ++ +
Sbjct: 28  IPAEAGQASFVLDVQSGQVLEASNQDDLNYPASLTKMMTLYLAFEALHDGRLTWDQKLTM 87

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
           S+ A ++ P KL +      T  + + +++  SAND + A  E + GSE+ FA  M++KA
Sbjct: 88  SENAESKEPFKLAVGAGRKVTLREAVESIVVLSANDSAVAIAEQLGGSEQAFARTMTDKA 147

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
           +++GM++T++KN SGL D  Q+TTARD A LG+ L ++FP+ +K FS+R F++R   +  
Sbjct: 148 RQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRDFPEEFKLFSMRGFQFRGMKLRG 207

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           HN L+ +   +DGIKTGYT  SG+N+VTS       +V VVMG  T+  RD K   L+ S
Sbjct: 208 HNNLMYRYDGVDGIKTGYTDASGYNVVTSALKGGRRVVGVVMGEKTAGLRDDKMAGLLDS 267

Query: 287 FL 288
            L
Sbjct: 268 TL 269


>gi|288957533|ref|YP_003447874.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510]
 gi|288909841|dbj|BAI71330.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510]
          Length = 474

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 99/230 (43%), Positives = 144/230 (62%), Gaps = 3/230 (1%)

Query: 57  IVIDVNKNQMTGFKQDEPR--YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           IV+D    Q+    QD     +PASLTKMMTLY+ F+ L+  +L L+ Q+PVS  A + +
Sbjct: 88  IVVDARTGQVL-IDQDADAITHPASLTKMMTLYLTFDALEDGRLTLDQQLPVSSWAESMS 146

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           P+KL L+       E  IL L+T+SAND +    E + G+E +FA +M+ KA+++GM++T
Sbjct: 147 PTKLGLRAGQTLKVETAILGLVTKSANDAAVVLAEALGGTESRFAEMMTRKARELGMRHT 206

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
           +Y+NASGL +  Q+TTARD A L   L ++  +YY YFS R F Y  R + NHN+L+++ 
Sbjct: 207 VYRNASGLPNMEQVTTARDYAALSRALMRDHAKYYPYFSRRNFVYGGRTLPNHNRLMSRY 266

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
             +DGIKTGYT  SGFN+  S       +V VV+G  ++  RD K   L+
Sbjct: 267 EGMDGIKTGYTVASGFNLAASAVRDGRRLVGVVLGGKSAVSRDNKMAALL 316


>gi|209549573|ref|YP_002281490.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209535329|gb|ACI55264.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 291

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 99/240 (41%), Positives = 148/240 (61%), Gaps = 1/240 (0%)

Query: 50  AKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   +S V+D    Q +    QD+  YPASLTKMMTLY+ FE L   +L  + ++ +S+
Sbjct: 25  AEAGQASFVVDAQSGQVLEASNQDDLNYPASLTKMMTLYLAFEALHEGRLTWDQKLTMSE 84

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            A ++ P KL +      T  + + +++  SAND + A  E + GSE+ FA  M++KA++
Sbjct: 85  NAESKEPFKLAVGAGRQVTLREAVESIVVLSANDSAVAIAEQLGGSEQAFAKAMTDKARQ 144

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           +GM NT+++N SGL D  Q+T+ARD A LGI L ++FP+ +K FS+R F++R   +  HN
Sbjct: 145 LGMTNTVFRNPSGLPDPEQVTSARDMATLGISLMRDFPEEFKLFSMRGFQFRGMKLRGHN 204

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            L+ +   +DGIKTGYT  SG+N+VTS       +V VVMG  T+  RD K   L+ S L
Sbjct: 205 NLMYRYDGVDGIKTGYTDASGYNVVTSALKDGRRVVGVVMGEKTASLRDDKMAGLLDSTL 264


>gi|254418835|ref|ZP_05032559.1| beta-lactamase, putative [Brevundimonas sp. BAL3]
 gi|196185012|gb|EDX79988.1| beta-lactamase, putative [Brevundimonas sp. BAL3]
          Length = 493

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 109/269 (40%), Positives = 156/269 (57%), Gaps = 7/269 (2%)

Query: 34  ILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLY 87
           +L LS+++ +    + A+     +Y++IVID    ++  F +  D  RYPASLTKMMTLY
Sbjct: 12  VLALSLVLGANVRPIEAQSQENSRYAAIVIDAASGEVL-FSRHADSRRYPASLTKMMTLY 70

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + FE L   K+H +  + VS+ AA Q PSKL L      T +  + A   RSAND++ A 
Sbjct: 71  LTFEALSQGKVHADDVLTVSQQAAAQPPSKLGLGAGQTITLDDAMRATAVRSANDMAVAI 130

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E I GSE +FA LM+ KA+++GM  T Y  A+GL D  Q T+ARDQAIL   + ++FPQ
Sbjct: 131 AEHIGGSESRFATLMTAKAQQLGMTQTRYFTANGLPDARQTTSARDQAILARAIMRDFPQ 190

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           YYKYF +  + Y  R   N N LL   +  DG+KTGYT  SG+N+  S       ++ VV
Sbjct: 191 YYKYFGLHDWAYNGRSYRNTNGLLPTGNGYDGMKTGYTNASGYNLAASAVRDGRRLITVV 250

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKHQ 296
           +G  +S  R+    EL+ +  E +  + Q
Sbjct: 251 LGGRSSASRNAHVAELMDTGFEVERRRSQ 279


>gi|307945901|ref|ZP_07661237.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseibium sp. TrichSKD4]
 gi|307771774|gb|EFO30999.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseibium sp. TrichSKD4]
          Length = 301

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 101/216 (46%), Positives = 134/216 (62%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D PR+PASLTKMMTLY++FE +   +  L+T + VS  AA+Q PSK+ LK  +  T EQ 
Sbjct: 84  DAPRFPASLTKMMTLYLLFEEVSKGRYTLSTPLNVSANAASQPPSKIGLKPGSTITVEQA 143

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
             AL  +SANDV+ A  E ISGSE  FA  M+ KAK +G+  T + NASGL +  Q+TTA
Sbjct: 144 ARALAIKSANDVAIAVAENISGSEAAFARKMTQKAKSLGLTRTRFVNASGLPNPRQVTTA 203

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           RD A LG+ L++ FPQY  Y+  R   Y  R     N L+ K+  +DG+KTGY R SG+N
Sbjct: 204 RDMAKLGMALKRRFPQYASYYKARSVTYNGRRFKATNNLIGKVAGVDGLKTGYVRLSGYN 263

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           +V + R     +V VVMG  +   RD +  +LI  F
Sbjct: 264 LVATSRRNGRKLVVVVMGGASESARDTEVTQLIERF 299


>gi|330993785|ref|ZP_08317717.1| D-alanyl-D-alanine carboxypeptidase dacF [Gluconacetobacter sp.
           SXCC-1]
 gi|329759053|gb|EGG75565.1| D-alanyl-D-alanine carboxypeptidase dacF [Gluconacetobacter sp.
           SXCC-1]
          Length = 371

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 100/268 (37%), Positives = 161/268 (60%), Gaps = 10/268 (3%)

Query: 40  IMISMASELHAKPKY----SSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYIIFEY 92
           + I +     A+ +Y    SSIV+D     +    Q +P   RYPASLTK+MTLY+ F+ 
Sbjct: 20  LCIGLGGMHAARAQYAGQVSSIVVDARTGAV--LSQQDPDLRRYPASLTKLMTLYLTFKA 77

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           +++ ++ L  Q+PVS  AA+  PSKL L+  +  T EQ +LAL+T+SAND + A GEF+ 
Sbjct: 78  VRTGQVTLEQQMPVSVHAASMEPSKLGLRPGSSLTVEQAVLALVTKSANDAACALGEFLG 137

Query: 153 GS-EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           G  E +FA +M+ +A ++GM +T+++NASGL +  Q+T+ARD A+L   L  ++ +YY Y
Sbjct: 138 GGDETRFAAMMTREAGRLGMYDTVFRNASGLPNPEQMTSARDLAVLARHLIVDYGEYYHY 197

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           F++  F +    + NH+ +L      DG+KTGYT  +G N+VTS    +  ++ VVMG  
Sbjct: 198 FAVPGFYFHGHAVPNHDPMLGAYPGADGLKTGYTDEAGHNLVTSAVRDNVRLIGVVMGAK 257

Query: 272 TSQERDQKALELITSFLEKKTLKHQQTH 299
           ++  R+    EL+ +  + + +     H
Sbjct: 258 SNSRRNTTMAELLDASFQTEGVAPAGLH 285


>gi|86357959|ref|YP_469851.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42]
 gi|86282061|gb|ABC91124.1| probable D-alanyl-D-alanine carboxypeptidase protein [Rhizobium
           etli CFN 42]
          Length = 354

 Score =  198 bits (504), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 100/252 (39%), Positives = 152/252 (60%), Gaps = 4/252 (1%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSK 96
           +++M + A    A+   +S V+D    Q +    QD+  YPASLTKMMTLY+ FE L   
Sbjct: 79  ALLMCAFA---QAEAGQASFVVDAQSGQVLEASNQDDLNYPASLTKMMTLYLAFEALHEG 135

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           +L  + ++ +S+ A ++ P KL +      T  + + ++I  SAND + A  E + GSE+
Sbjct: 136 RLTWDQKLTMSENAESKEPFKLAIGAGRQVTLREAVESIIVLSANDSAVAIAEQLGGSEQ 195

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            FA  M++KA ++GM++T++KN SGL D  Q+TTARD A LG+ L ++FP+ +K FS+R 
Sbjct: 196 TFARTMTDKAHQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRDFPEEFKLFSMRG 255

Query: 217 FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           F++R      HN L+ +   +DGIKTGYT  SG+N+VTS       +V VVMG  T+  R
Sbjct: 256 FKFRGMKFRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKDGRRLVGVVMGEKTASLR 315

Query: 277 DQKALELITSFL 288
           D +   L+   L
Sbjct: 316 DDRMASLLDGAL 327


>gi|300022145|ref|YP_003754756.1| serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299523966|gb|ADJ22435.1| Serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 583

 Score =  198 bits (504), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 107/264 (40%), Positives = 152/264 (57%), Gaps = 16/264 (6%)

Query: 58  VIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           V+DVN    +     D  R+PASLTKMMTLY+ FE ++S +L ++  I +S  AA   PS
Sbjct: 34  VLDVNSGAVLHNDDGDAIRHPASLTKMMTLYLTFELIESSRLKMSDMITISDRAANAAPS 93

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
           KL LK     +    I A++T+SAND++ A  E I G+E  F  LM+ +A+ +GM  T +
Sbjct: 94  KLDLKPGAQISVADSIKAVVTKSANDIAVALAEKIGGTEANFVRLMNTRARDLGMTKTHF 153

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN 236
           +N SGL D + ++TA D AIL + L  +FP +Y+ FS R F YR +   NHN +LN    
Sbjct: 154 ENPSGLPDDDHVSTAHDMAILALRLMDDFPAHYQVFSTRTFAYRGKSYRNHNTMLNTFQG 213

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT-SFLEKKTLKH 295
           +DGIKTGYTR SGFN+VTS+      +V VV G  T+  R+ +   L+T +F    T K 
Sbjct: 214 VDGIKTGYTRASGFNLVTSVHRGGRHLVGVVFGGSTAAARNAEMRVLLTKAFTRASTAK- 272

Query: 296 QQTHRKDNLSSTSLKKSLMIKKLK 319
                         +K +++ KLK
Sbjct: 273 -------------TRKPMLVAKLK 283


>gi|118590830|ref|ZP_01548230.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein [Stappia
           aggregata IAM 12614]
 gi|118436352|gb|EAV42993.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein [Stappia
           aggregata IAM 12614]
          Length = 295

 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 92/247 (37%), Positives = 151/247 (61%), Gaps = 1/247 (0%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           ++ A E   +  +S++V++ +  + +     D PRYPASL+KMMTLY++FE +   +  L
Sbjct: 48  VAYAPETAVERGFSALVLNASTGEELYAVDADAPRYPASLSKMMTLYLLFEAVSEGRYSL 107

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
           +T + VS  AA++ P+K+ LK  +  T E+   AL  +SANDV+    E ++GSE  FA 
Sbjct: 108 STPLSVSAKAASEPPAKIGLKAGSTITVEEAARALAVKSANDVAIVVAENLAGSEAAFAR 167

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
            M+++A+ +G+  T + NA+GL D  Q+++ARD A+LG+ L++ FPQY  Y+  + F Y 
Sbjct: 168 QMTSQARALGLSRTRFVNATGLPDPAQVSSARDMAVLGLTLKRRFPQYASYYRAKSFSYN 227

Query: 221 NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
            R     N L+ K+  +DG+KTGY R SG+N+V +       ++ VVMG  +   RD++ 
Sbjct: 228 GRTFRATNNLVGKVAGVDGLKTGYIRMSGYNLVATANRGGKRLIVVVMGGASEAARDKEV 287

Query: 281 LELITSF 287
             LI ++
Sbjct: 288 TRLIEAY 294


>gi|218671981|ref|ZP_03521650.1| probable D-alanyl-D-alanine carboxypeptidase protein [Rhizobium
           etli GR56]
          Length = 277

 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 100/250 (40%), Positives = 149/250 (59%), Gaps = 1/250 (0%)

Query: 44  MASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           M +   A+   +S V+D    Q +     D+  YPASLTKMMTLY+ FE L   +L    
Sbjct: 19  MGAFAQAEAGQASFVVDAQSGQVLEASNPDDLNYPASLTKMMTLYLAFEALHEGRLTWEQ 78

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           ++ +S+ A ++ P KL +      T  + + +++  SAND + A  E + GSE+ FA  M
Sbjct: 79  KLTMSENAESKEPFKLAVGAGRRVTLREAVESIVVLSANDSAVAIAEQLGGSEQAFAKTM 138

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
           ++KA ++GM++T++KN SGL D  Q+TTARD A LG+ L ++FP+ +K FS+R F++R  
Sbjct: 139 TDKAHQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRDFPEEFKLFSMRGFQFRGM 198

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            +  HN L+ +   +DGIKTGYT  SG+N+VTS       +V VVMG  T+  RD K   
Sbjct: 199 KLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKGGRRVVGVVMGEKTAGLRDDKMAG 258

Query: 283 LITSFLEKKT 292
           L+ S L   T
Sbjct: 259 LLDSTLSPST 268


>gi|296116795|ref|ZP_06835401.1| D-alanyl-D-alanine carboxypeptidase [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976596|gb|EFG83368.1| D-alanyl-D-alanine carboxypeptidase [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 402

 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 96/232 (41%), Positives = 152/232 (65%), Gaps = 2/232 (0%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           SSIV+D      ++    D  R+PASLTK+MTLY+ F+ L++ ++ L+  +PVS  AA+ 
Sbjct: 62  SSIVMDARTGTVLSQSNADLRRFPASLTKLMTLYLTFKALRAGRITLDQVVPVSAHAASM 121

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI-SGSEKKFAILMSNKAKKIGMQ 172
            PSKL L+  +Y T E+ ILAL+T+SAND + A GEF+ +GSE  FA +M+ +A ++ M 
Sbjct: 122 EPSKLGLRPGSYLTVEEAILALVTKSANDAACALGEFLGAGSESTFAQIMTQQAARLSMN 181

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           +T ++NASGL ++ Q+T+ARD A L   +  +F +YY YF++  F +R R + NH+ +L 
Sbjct: 182 DTSFRNASGLPNEEQMTSARDLATLARHIALDFGEYYHYFAVPAFYFRGRYVPNHDPMLK 241

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                DG+KTGYT  +G N+VTS    +  ++ VV+G P+++ R+    +L+
Sbjct: 242 SYPGADGLKTGYTAVAGHNLVTSAVRDNVRLIGVVLGAPSNETRNAVMADLL 293


>gi|209964991|ref|YP_002297906.1| D-alanyl-D-alanine carboxypeptidase [Rhodospirillum centenum SW]
 gi|209958457|gb|ACI99093.1| D-alanyl-D-alanine carboxypeptidase [Rhodospirillum centenum SW]
          Length = 458

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 98/240 (40%), Positives = 146/240 (60%), Gaps = 1/240 (0%)

Query: 53  KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           KY+SIVID    + +     D   +PAS+TKMMTLY+ F+ L ++KL L+ ++ VS  AA
Sbjct: 60  KYASIVIDAETGEILHAASADTRNFPASMTKMMTLYMTFDALDARKLTLDQRLKVSSRAA 119

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
              PSKL LK      TE  IL+L+T+SAND +    E I G+E +FA +M+++A+ +GM
Sbjct: 120 GMAPSKLGLKPGETIRTEDCILSLVTKSANDCAVVLAEAIGGTETEFARMMTDRARALGM 179

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           + T ++NASGL +  Q++TARD A L   L ++  +YY YFS R+F Y+     NHN+L+
Sbjct: 180 RRTTFRNASGLPNAGQLSTARDMARLAQALIQDHAKYYPYFSTRQFTYKGVTHGNHNRLM 239

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
            +   +DG+KTG+ R SGFN+  S       ++ VV G  T+  RD    +L+    E +
Sbjct: 240 ARYRGMDGLKTGFIRASGFNLAASAVRDGRRLIGVVFGGETAVWRDNHMADLLDKAFEGR 299


>gi|209545022|ref|YP_002277251.1| Serine-type D-Ala-D-Ala carboxypeptidase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532699|gb|ACI52636.1| Serine-type D-Ala-D-Ala carboxypeptidase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 420

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)

Query: 32  GKILFLSI--------IMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEP---RYPA 78
           GK+L LS         +M       HA+   + SSIV+D     +    Q  P   R+PA
Sbjct: 70  GKVLRLSFGLSVGCAAVMAGFVPRAHAQYVGQISSIVMDARTGAI--LSQSNPDLQRFPA 127

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           SLTK+MTLY+ F+ L + ++ L+  +PVS  +A+  PSKL L   +Y T EQ +L L+T+
Sbjct: 128 SLTKLMTLYLAFKALHAGQITLDQSVPVSAHSASMEPSKLGLMPGSYLTVEQAVLGLVTK 187

Query: 139 SANDVSTAFGEFISGS-EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           SAND + A GE + G  E +FA LM+ +A+ +GM  T ++NASGL +  Q+T+ARD A+L
Sbjct: 188 SANDAACALGELMGGGDEGRFADLMTRQARALGMTRTTFRNASGLPNDEQVTSARDLALL 247

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              +   FP YY YFS+  F +  R + NH+ +L      DG+KTGYT ++G N+VTS  
Sbjct: 248 TRQIITEFPDYYHYFSVPAFYFHGRQVPNHDPMLRIYPGADGLKTGYTTDAGRNLVTSAI 307

Query: 258 YKDDPIVAVVMGMPTSQER 276
            ++  ++ VV+G  T+ +R
Sbjct: 308 RENVRLIGVVLGARTNPQR 326


>gi|328543015|ref|YP_004303124.1| D-alanyl-D-alanine carboxypeptidase superfamily [polymorphum gilvum
           SL003B-26A1]
 gi|326412761|gb|ADZ69824.1| D-alanyl-D-alanine carboxypeptidase superfamily [Polymorphum gilvum
           SL003B-26A1]
          Length = 314

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 103/252 (40%), Positives = 146/252 (57%), Gaps = 4/252 (1%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKN-QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSK 96
           S+ ++  ++E      ++++VID     ++     D PRYPASLTKMMTLY++FE ++  
Sbjct: 66  SVALVPASAEARG---HAALVIDAASGAELFAANADAPRYPASLTKMMTLYLLFEAVERG 122

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           +L L+T + VS  AA + P+K+ L   +  T  +   AL  RSANDV+ A  E ++GSE 
Sbjct: 123 ELTLDTPLAVSARAAARPPAKIGLATGSTITVREAAQALAVRSANDVAVAIAERLAGSES 182

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            FA  M+ KA+ +GM  T + NASGL D  Q+TTARD AILG  L+  FPQY  YF    
Sbjct: 183 AFAAQMTAKARSLGMSRTRFVNASGLADTRQVTTARDMAILGRALKARFPQYAAYFRATS 242

Query: 217 FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           F Y  R     NKLL ++  +DG+KTGY   SG+N+V +        V VVMG  +   R
Sbjct: 243 FAYNGRTFEATNKLLGRVPGVDGLKTGYIGLSGYNLVATGSRGGRGFVVVVMGGKSESAR 302

Query: 277 DQKALELITSFL 288
           D +   LI ++ 
Sbjct: 303 DAEVTRLIETYF 314


>gi|15964646|ref|NP_384999.1| hypothetical protein SMc00068 [Sinorhizobium meliloti 1021]
 gi|307304223|ref|ZP_07583975.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           BL225C]
 gi|307320528|ref|ZP_07599943.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           AK83]
 gi|15073824|emb|CAC45465.1| Probable D-alanyl-D-alanine carboxypeptidase [Sinorhizobium
           meliloti 1021]
 gi|306893804|gb|EFN24575.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           AK83]
 gi|306902691|gb|EFN33284.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           BL225C]
          Length = 409

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 99/257 (38%), Positives = 159/257 (61%), Gaps = 1/257 (0%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYL 93
           L ++ I +     + A    +S+V+D    + ++    D   +PASLTKMMTLY+ FE L
Sbjct: 6   LAMATIAVLFFGAVQAMAGNASLVVDARTGRVLSAENPDTLHHPASLTKMMTLYMTFEAL 65

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
              ++   T +PVS TAA + P+KL +K     T E+ +  +I RSAND + A  E + G
Sbjct: 66  HRGQIAWKTPVPVSATAARKPPTKLGVKAGGTITVEEAVYGMIVRSANDAAAAMAERLGG 125

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           SE+ FA +M+ KA+++GM  T + NASGL    Q+TTARD A L + L +++P+ Y+ FS
Sbjct: 126 SEEGFARMMNAKARQLGMNRTFFVNASGLPASEQVTTARDMARLAVALMRHYPREYRLFS 185

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           ++ F +R R+I  HN L+ +   +DGIKTGYTR SG+N+V+++  ++  ++ VV+G  ++
Sbjct: 186 VQSFAFRGRVIRGHNNLMYRYQGMDGIKTGYTRASGYNLVSAVNDRNRRLIGVVLGGRSA 245

Query: 274 QERDQKALELITSFLEK 290
           + RD+K   L+   L +
Sbjct: 246 RSRDEKMAALLDQHLGR 262


>gi|162149241|ref|YP_001603702.1| D-alanyl-D-alanin carboxypeptidase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787818|emb|CAP57416.1| putative D-alanyl-D-alanin carboxypeptidase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 423

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 103/259 (39%), Positives = 154/259 (59%), Gaps = 16/259 (6%)

Query: 32  GKILFLSI--------IMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEP---RYPA 78
           GK+L LS         +M       HA+   + SSIV+D     +    Q  P   R+PA
Sbjct: 73  GKVLRLSFALSVGCAAVMAGFVPRAHAQYVGQISSIVMDARTGAI--LSQSNPDLQRFPA 130

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           SLTK+MTLY+ F+ L + ++ L+  +PVS  +A+  PSKL L   +Y T EQ +L L+T+
Sbjct: 131 SLTKLMTLYLAFKALHAGQITLDQSVPVSAHSASMEPSKLGLMPGSYLTVEQAVLGLVTK 190

Query: 139 SANDVSTAFGEFISGS-EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           SAND + A GE + G  E +FA LM+ +A+ +GM  T ++NASGL +  Q+T+ARD A+L
Sbjct: 191 SANDAACALGELMGGGDEGRFADLMTRQARALGMTRTTFRNASGLPNDEQVTSARDLALL 250

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              +   FP YY YFS+  F +  R + NH+ +L      DG+KTGYT ++G N+VTS  
Sbjct: 251 TRQIITEFPDYYHYFSVPAFYFHGRQVPNHDPMLRIYPGADGLKTGYTTDAGRNLVTSAI 310

Query: 258 YKDDPIVAVVMGMPTSQER 276
            ++  ++ VV+G  T+ +R
Sbjct: 311 RENVRLIGVVLGARTNPQR 329


>gi|190890661|ref|YP_001977203.1| D-alanyl-D-alanine carboxypeptidase [Rhizobium etli CIAT 652]
 gi|190695940|gb|ACE90025.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CIAT
           652]
          Length = 432

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 100/261 (38%), Positives = 163/261 (62%), Gaps = 3/261 (1%)

Query: 35  LFLSIIMISMA--SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFE 91
           L  +++ +++A  + L A    +S+++D    ++   +  D   +PASLTKMMTLY+ FE
Sbjct: 4   LLAAVLTVTLAVSAPLAALAGSASLILDARTGKVLAAENADTLNHPASLTKMMTLYLTFE 63

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            L+  K+  +T I +SK AA + P+KL +K     T  + +  +I +SAND + A  E +
Sbjct: 64  ALKRGKIDWDTPIRMSKYAAARPPTKLGVKAGGTITVREAVYGMIVKSANDAAAAMAETL 123

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            GSE  FA +M+ KA+++GM  T++ NASGL + +Q+TTARD + LG+ L KN+P  Y+ 
Sbjct: 124 GGSESGFARMMTAKARQLGMSRTVFVNASGLPNPSQVTTARDMSTLGVALMKNYPNEYRL 183

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           FS+  F +R + +  HN L+ +   +DGIKTGYT  SGFN+V+++R  +  +V VV+G  
Sbjct: 184 FSMASFNFRGKTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVVGVVLGGR 243

Query: 272 TSQERDQKALELITSFLEKKT 292
           T++ RD K   L+  +L + +
Sbjct: 244 TARSRDAKMAGLLDRYLGRAS 264


>gi|225872450|ref|YP_002753905.1| D-alanyl-D-alanine carboxypeptidase family protein [Acidobacterium
           capsulatum ATCC 51196]
 gi|225792978|gb|ACO33068.1| D-alanyl-D-alanine carboxypeptidase family protein [Acidobacterium
           capsulatum ATCC 51196]
          Length = 414

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 97/263 (36%), Positives = 157/263 (59%), Gaps = 2/263 (0%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLT 81
           Y  +   L    L +++  ++MA    A   ++S+++D    + +  +  DE  +PASLT
Sbjct: 14  YFAKQSLLSAGCLLMALTALAMARPAQAV-VHASLLMDARSGKVLYAYHADERTHPASLT 72

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MTLY+ F+ LQ  ++ L+ ++ +S  AA Q PSK++L      +    IL +I+ SAN
Sbjct: 73  KLMTLYLTFQRLQDGRMRLDERLHISAHAAGQQPSKMWLHAGGTVSVRSCILGIISHSAN 132

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D +    E ++G+E +F  LM+ +A+++GM +TI+ NASGL D  Q TTA D A L   L
Sbjct: 133 DAAVTLAEGMAGTEWRFTRLMNEQARRLGMTHTIFYNASGLPDGRQWTTAYDMAKLARAL 192

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
              FPQYY +FS+  FRY+ R++ + ++L  +   +DG+KTGY  +SGFNIVTS      
Sbjct: 193 IYTFPQYYHFFSVHAFRYQGRMLYSFDRLPQEYTGVDGMKTGYINSSGFNIVTSAVRNHH 252

Query: 262 PIVAVVMGMPTSQERDQKALELI 284
            ++ VV+G  T+  RD + + L+
Sbjct: 253 RVIGVVLGGATAHSRDLQMIALL 275


>gi|86356590|ref|YP_468482.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42]
 gi|86280692|gb|ABC89755.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42]
          Length = 419

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 98/254 (38%), Positives = 160/254 (62%), Gaps = 1/254 (0%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           + +++++ L A    +S+++D    ++   +  D   +PASLTKMMTLY+ FE L+  K+
Sbjct: 3   VTLAVSAPLAALAGSASLILDARTGKVLASENADTLNHPASLTKMMTLYLTFEALKRGKI 62

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
             +T I +SK AA + P+KL +K     T  + +  +I +SAND + A  E + GSE  F
Sbjct: 63  AWDTPIKMSKYAAARPPTKLGVKAGGTITVREAVYGMIVKSANDAAAAMAETLGGSESGF 122

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           A +M+ KA+++GM  T++ NASGL + +Q+TTARD + LG+ L KNFP  Y+ FS+  F 
Sbjct: 123 ARMMTAKARQLGMSRTVFVNASGLPNSSQVTTARDMSTLGVALMKNFPNEYRLFSMASFN 182

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +R + +  HN L+ +   +DGIKTGYT  SGFN+V+++R  +  +V VV+G  T++ RD 
Sbjct: 183 FRGKTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVVGVVLGGRTARSRDA 242

Query: 279 KALELITSFLEKKT 292
           +   L+  +L + +
Sbjct: 243 RMEALLDRYLGRAS 256


>gi|222147779|ref|YP_002548736.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein)
           [Agrobacterium vitis S4]
 gi|221734767|gb|ACM35730.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein)
           [Agrobacterium vitis S4]
          Length = 442

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 103/259 (39%), Positives = 161/259 (62%), Gaps = 5/259 (1%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
           LF+SI M  MAS + A    + +++D    ++   +  D P +PASLTKMMT+Y++F+ +
Sbjct: 10  LFVSISM--MASPVLAG--SAQLLLDARTGRVIASENADMPNHPASLTKMMTIYMVFDAI 65

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           +   L  ++ +P SK A+++ P+KL LK     T  + +L ++T SAND + A  E + G
Sbjct: 66  RRGTLSWDSPVPFSKYASSRPPTKLRLKPGEEITVREAVLGMVTLSANDAAAAMAEKLGG 125

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           +E+ FA +M+ KA+++GM NT + NASGL D  QITTARD + LG+ L ++FP+ Y  FS
Sbjct: 126 TEENFAAMMTAKARQLGMPNTTFVNASGLPDDRQITTARDMSTLGVALLRDFPRDYALFS 185

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            R F +R R I  HN L+ +   +DGIKTGYT  SG+N+V+++      ++ V+MG  + 
Sbjct: 186 TRSFAFRGRTINGHNNLMYRYKGMDGIKTGYTNASGYNLVSAVADGKRRVIGVIMGGRSG 245

Query: 274 QERDQKALELITSFLEKKT 292
             RD    +LIT  + K +
Sbjct: 246 ASRDNLMAQLITKNIGKAS 264


>gi|157825663|ref|YP_001493383.1| penicillin-binding protein dacF precursor [Rickettsia akari str.
           Hartford]
 gi|157799621|gb|ABV74875.1| penicillin-binding protein dacF precursor [Rickettsia akari str.
           Hartford]
          Length = 306

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 100/246 (40%), Positives = 149/246 (60%), Gaps = 1/246 (0%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  +S+VID    ++      + R YPASLTK+MTLY++FE ++  KL L+ ++ VS+ A
Sbjct: 34  PVQTSLVIDAKSGKVLQAHNSQIRVYPASLTKLMTLYLMFEAIEDGKLSLDQKLLVSQKA 93

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           +   P KL LK     T  + I  LI +SAND +    E + GSEK FA LM+ KAK++G
Sbjct: 94  SKMPPCKLGLKAGETITVREAINGLIIKSANDAAVTVAEGMKGSEKAFAHLMNIKAKQLG 153

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+NT +KNASG HD  Q+TTARD A L + L+K++P+YY  FS   F +R  I+  HN++
Sbjct: 154 MKNTYFKNASGWHDPLQLTTARDMAKLTMALKKDYPKYYPLFSKTSFVFRGNIVNGHNRV 213

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                  +G+KTG+   +G+N+VT+       ++AVV G  ++  RDQK + L+      
Sbjct: 214 TKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAVVTGGKSAASRDQKMMWLLDQHFNI 273

Query: 291 KTLKHQ 296
           K + H+
Sbjct: 274 KPIVHK 279


>gi|148554284|ref|YP_001261866.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingomonas wittichii
           RW1]
 gi|148499474|gb|ABQ67728.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingomonas wittichii
           RW1]
          Length = 326

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 102/297 (34%), Positives = 169/297 (56%), Gaps = 12/297 (4%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYIIFEYLQSKKLHLN 101
           AS L A P++S++++D + N++     ++P   R+PAS+TK+MTLY++F+ L + +L L+
Sbjct: 37  ASPLGA-PRFSAVLMDADTNEI--LYAEQPTAIRHPASITKVMTLYLVFDALDAGRLKLD 93

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
            ++ +S  AA+Q PSKL L      +    I  +  +SANDV+ A  E I G+E  FA +
Sbjct: 94  DRVVMSPLAASQRPSKLGLGIGQSLSVADAISVVAVKSANDVAVALAEKIGGTEANFARM 153

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           M+ KA+++GM+ T++ NASGL +    T+A+D AIL   + +N P  Y  FS + F Y  
Sbjct: 154 MTAKARQLGMRQTVFANASGLPNPGHFTSAQDIAILSAAMIRNHPARYHCFSEQSFSYGK 213

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
             + NHNKLL  +  +DGIKTG+T +SGF +  S       ++AVV+G P+  +RD+   
Sbjct: 214 LRMANHNKLLGNVPGVDGIKTGFTNDSGFTLTASAVRNGHRLIAVVLGSPSGWQRDRD-- 271

Query: 282 ELITSFLEKK--TLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
             ITS L      L+ +   R +++++        + +  R   Q   +  +   T+
Sbjct: 272 --ITSLLNAGFTALEIRGAGRSEDMAALLSSSGFALNRSLRPLPQIAALQVEEGDTE 326


>gi|15604254|ref|NP_220770.1| penicillin-binding protein DACF precursor (dacF) [Rickettsia
           prowazekii str. Madrid E]
 gi|3860946|emb|CAA14846.1| PENICILLIN-BINDING PROTEIN DACF PRECURSOR (dacF) [Rickettsia
           prowazekii]
 gi|292572000|gb|ADE29915.1| Penicillin-binding protein dacF precursor [Rickettsia prowazekii
           Rp22]
          Length = 306

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 99/243 (40%), Positives = 149/243 (61%), Gaps = 1/243 (0%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  +S+VID    ++      + R YPASLTK+MTLY+IFE ++S+KL L+ ++ VS  A
Sbjct: 34  PIQTSLVIDAKNGKVLQAHNAQVRIYPASLTKLMTLYLIFEAIESRKLSLDKKLLVSAKA 93

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           +     KL L+   + T  + I  LI +SANDV+    E + GSEK FA LM+ +AK +G
Sbjct: 94  SKMPHCKLGLRAGDHITVREAINGLIIKSANDVAVTVAEGMKGSEKAFAHLMNVRAKTLG 153

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+NT +KNASGLHD  Q TTARD A L I L++++P+YY  FS   F +R  ++  HN +
Sbjct: 154 MKNTFFKNASGLHDPFQQTTARDIAKLAIALKRDYPKYYPLFSKTHFVFRGNVVNGHNSV 213

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                  +G+KTG+   +G+N+VT+    +  ++AV+ G  ++  RDQK + L+      
Sbjct: 214 TKHYQGAEGMKTGFHTPAGYNLVTTASRNNKSLIAVITGGKSAASRDQKMMRLLDHHFGV 273

Query: 291 KTL 293
           KT+
Sbjct: 274 KTI 276


>gi|150395730|ref|YP_001326197.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae
           WSM419]
 gi|150027245|gb|ABR59362.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae
           WSM419]
          Length = 405

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 97/257 (37%), Positives = 157/257 (61%), Gaps = 1/257 (0%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYL 93
           L L+ I +       A    +S+V+D    + ++    D   +PASLTKMMTLY+ FE L
Sbjct: 6   LALATIAVLFFGTAQAVAGSASLVVDARTGRVLSAENPDTLNHPASLTKMMTLYMTFEAL 65

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
              +L   T +P+S TAA + P+KL ++     T ++ +  +I RSAND + A  E + G
Sbjct: 66  HRGQLAWKTPVPMSATAARKPPTKLGVRPGETITVQEAVYGMIVRSANDAAAAMAERLGG 125

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           +E+ FA +M+ KA+++GM  T + NASGL    Q+TTARD A L + L +++P+ Y+ FS
Sbjct: 126 TEEGFARMMNAKARQLGMNRTFFVNASGLPASEQVTTARDMARLAVALMRHYPREYRLFS 185

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           ++ F +R R+I  HN L+ +   +DGIKTGYTR SG+N+V+++   +  ++ VV+G  ++
Sbjct: 186 VQSFAFRGRVIRGHNNLMYRYQGMDGIKTGYTRASGYNLVSAVAEGNRRLIGVVLGGRSA 245

Query: 274 QERDQKALELITSFLEK 290
           + RD+K   L+   L +
Sbjct: 246 RSRDEKMAALLDQHLGR 262


>gi|222085114|ref|YP_002543644.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium
           radiobacter K84]
 gi|221722562|gb|ACM25718.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium
           radiobacter K84]
          Length = 429

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 97/219 (44%), Positives = 141/219 (64%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D+  +PASLTKMMTLY+ FE +   KL  N++IPVS  AA + P+KL LK     T  + 
Sbjct: 44  DDLNHPASLTKMMTLYMTFEAINRGKLSWNSKIPVSSNAAGKPPTKLGLKPGGTVTVREA 103

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +I +SAND + A  E + GSE  FA LM+ KA++IGM+ T++ NASGL +  Q+TTA
Sbjct: 104 VDGMIIKSANDAAAAMAEALGGSESGFARLMTQKAREIGMRRTVFMNASGLPNMQQVTTA 163

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           RD + L + L  N+PQ Y+ FS   F YR + +  HN L+ +   +DGIKTGYT  SGFN
Sbjct: 164 RDMSTLAVALINNYPQEYRLFSQTGFTYRGQRVRGHNNLMYRYEGMDGIKTGYTNASGFN 223

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +V+++R+ +  ++ VVMG  T++ RD     L+  ++ K
Sbjct: 224 LVSAVRHGNRRVIGVVMGGATARGRDALMASLLDRYVPK 262


>gi|51473579|ref|YP_067336.1| D-alanyl-D-alanine carboxypeptidase. [Rickettsia typhi str.
           Wilmington]
 gi|51459891|gb|AAU03854.1| D-alanyl-D-alanine carboxypeptidase [Rickettsia typhi str.
           Wilmington]
          Length = 306

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 100/248 (40%), Positives = 151/248 (60%), Gaps = 1/248 (0%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  +S+VID    ++      + R YPASLTK+MTLY++FE ++S KL L+ ++ VS  A
Sbjct: 34  PVQTSLVIDAKNGKVLQAHNAQVRIYPASLTKLMTLYLMFEAIESGKLSLDKKLLVSAKA 93

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           +     KL L+     T    I  LI +SANDV+    E + GSEK FA LM+ KAK +G
Sbjct: 94  SKMPHCKLGLRAGDNITVRDAINGLIIKSANDVAVTVAEGMKGSEKSFAHLMNVKAKTLG 153

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M++T +KNASGLHD  Q TTARD A L I L++++P+YY +FS   F +R  +I  HN +
Sbjct: 154 MKHTFFKNASGLHDPLQQTTARDIAKLAIALKRDYPKYYPFFSKTSFVFRGNVINGHNSV 213

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                  +G+KTG+   +G+N+VT+   K+  ++AV+ G  ++  RDQK + L+      
Sbjct: 214 TKHYQGAEGMKTGFHTPAGYNLVTTASRKNKSLIAVITGAKSAASRDQKMIRLLDHHFGV 273

Query: 291 KTLKHQQT 298
           KT+ ++ +
Sbjct: 274 KTINYKPS 281


>gi|114707363|ref|ZP_01440260.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506]
 gi|114537244|gb|EAU40371.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506]
          Length = 299

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 94/235 (40%), Positives = 149/235 (63%), Gaps = 1/235 (0%)

Query: 54  YSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +S++V+D    +     Q DE RYPASLTKMMTLY++FE +++ +L   TQ  VS+ AA+
Sbjct: 60  HSALVVDFGTGRTLYEDQADELRYPASLTKMMTLYLLFEAVENGQLSRETQFIVSENAAS 119

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           + PSKL LK          + AL  +SANDV+T   E ++G+E+ FA +M+ KA+ +GM 
Sbjct: 120 KPPSKLGLKPGESIPVSLAMTALAVKSANDVATVVAENMAGTEEAFAAVMTRKARSLGMN 179

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           +T + NASGL +  Q+++ARD AILG  +   +P Y + F+   ++Y  R   + NKLL 
Sbjct: 180 HTQFANASGLPNPQQVSSARDMAILGRAIMSRYPSYAQLFATPSYQYNGRTYNSTNKLLG 239

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           K+  +DG+KTGY  ++G ++V ++R     ++ VV+G  +S++RD +  ELI  +
Sbjct: 240 KVAGVDGMKTGYINDAGSHLVATVRRNGRRLIVVVLGGDSSRKRDAEVTELIERY 294


>gi|159043222|ref|YP_001532016.1| D-alanyl-D-alanine carboxypeptidase [Dinoroseobacter shibae DFL 12]
 gi|157910982|gb|ABV92415.1| D-alanyl-D-alanine carboxypeptidase [Dinoroseobacter shibae DFL 12]
          Length = 493

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 168/303 (55%), Gaps = 10/303 (3%)

Query: 36  FLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIF 90
            ++I+ + +  ++ A+P     Y+++VID    ++   +  + R +PASLTKMMTLYI F
Sbjct: 11  IIAIVCVCLGMQISAQPVQAAPYAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYIAF 70

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           E ++  ++ L+T++ +SK AA + PSKL L+          I A   RSAND +TA GE 
Sbjct: 71  EAVRMGEIGLDTKVRISKKAAAEPPSKLGLRPGQQIALRYLIRASAVRSANDAATAIGEA 130

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           ISGSE  FA  M+  AK +GM +T +KNA GL +   ++TARD   LG  L  ++P+YY 
Sbjct: 131 ISGSEAAFARRMNRTAKALGMNSTTFKNAHGLTESGHLSTARDMTTLGRHLFYDYPEYYN 190

Query: 211 YFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            FS R        + N N +LLN     DGIKTGYTR +GFN+V S     + I+A V G
Sbjct: 191 LFSRRSTDTTMGTVANTNRRLLNAYRGADGIKTGYTRAAGFNLVASAERGQERIIATVFG 250

Query: 270 MPTSQERDQKALELITSFLEK----KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQF 325
             +S  R+Q+  EL+    ++     +++     R D   + + +  L + K  R  ++ 
Sbjct: 251 GRSSATRNQRVAELLDLGFQRAPSVASVRKPAPPRYDRAFAQATRTDLALAKSPRPAARP 310

Query: 326 KKI 328
           + +
Sbjct: 311 QPV 313


>gi|163737219|ref|ZP_02144637.1| Serine-type D-Ala-D-Ala carboxypeptidase [Phaeobacter gallaeciensis
           BS107]
 gi|161389823|gb|EDQ14174.1| Serine-type D-Ala-D-Ala carboxypeptidase [Phaeobacter gallaeciensis
           BS107]
          Length = 529

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 102/257 (39%), Positives = 153/257 (59%), Gaps = 4/257 (1%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYI 88
           ++G ++FLS++  +    + A   Y+++VID    ++   +  + R +PASLTKMMTLYI
Sbjct: 26  VLGLVIFLSMVATAPPGAMAAP--YAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYI 83

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            FE +++ ++ L+T++ +S+ AA++ PSKL LK          I A   +SAND +TA G
Sbjct: 84  AFEAVRNGEISLDTKVKISRNAASEQPSKLGLKTGQRIAFRYLIRAAAVKSANDAATAIG 143

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E ++GSE  FA  M+  AK +GM  T +KNA GL  K  ++TARD   LG  L  ++P+Y
Sbjct: 144 ETLAGSEAAFARRMTRTAKALGMSRTTFKNAHGLTQKGHMSTARDMTTLGRHLLYDYPEY 203

Query: 209 YKYFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           Y  FS R      R + N N +LL      DGIKTGYTR +GFN+V S    ++ ++A V
Sbjct: 204 YNLFSRRSTDAGVRKVPNTNRRLLAAYRGADGIKTGYTRAAGFNLVASAERGNERVIATV 263

Query: 268 MGMPTSQERDQKALELI 284
            G  +S  R+ K  EL+
Sbjct: 264 FGGKSSTSRNAKVAELL 280


>gi|163740370|ref|ZP_02147764.1| D-alanyl-D-alanine carboxypeptidase family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161386228|gb|EDQ10603.1| D-alanyl-D-alanine carboxypeptidase family protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 550

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 102/257 (39%), Positives = 153/257 (59%), Gaps = 4/257 (1%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYI 88
           ++G ++FLS++  +    + A   Y+++VID    ++   +  + R +PASLTKMMTLYI
Sbjct: 47  VLGLVIFLSMVATAPPGAMAAP--YAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYI 104

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            FE +++ ++ L+T++ +S+ AA++ PSKL LK          I A   +SAND +TA G
Sbjct: 105 AFEAVRNGEISLDTKVKISRNAASEQPSKLGLKTGQRIAFRYLIRAAAVKSANDAATAIG 164

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E ++GSE  FA  M+  AK +GM  T +KNA GL  K  ++TARD   LG  L  ++P+Y
Sbjct: 165 ETLAGSEAAFARRMTRTAKALGMSRTTFKNAHGLTQKGHMSTARDMTTLGRHLLYDYPEY 224

Query: 209 YKYFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           Y  FS R      R + N N +LL      DGIKTGYTR +GFN+V S    ++ ++A V
Sbjct: 225 YNLFSRRSADAGVRKVPNTNRRLLAAYRGADGIKTGYTRAAGFNLVASAERGNERVIATV 284

Query: 268 MGMPTSQERDQKALELI 284
            G  +S  R+ K  EL+
Sbjct: 285 FGGKSSTSRNAKVAELL 301


>gi|90420704|ref|ZP_01228610.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90334995|gb|EAS48756.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 313

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 94/217 (43%), Positives = 132/217 (60%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D  RYPASLTKMMTLY++FE +++ +L +++++ VS+ AA+Q PSKL LK          
Sbjct: 80  DGLRYPASLTKMMTLYLLFETIEAGRLSMSSELRVSENAASQPPSKLGLKAGETIRVADA 139

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
             A+  +SANDV+T   E + GSE  FA  M+ KA+ +GM  T + NASGL D+ QI+TA
Sbjct: 140 AQAIAVKSANDVATVIAENLGGSEADFANAMTAKARALGMSRTRFVNASGLPDEGQISTA 199

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           RD A LG  L   FP Y   F+   F Y  R     NKLL  +  +DG+KTGY R++GF+
Sbjct: 200 RDMATLGRALLNRFPAYASLFTRTGFDYNGRHYNATNKLLGSVEGVDGLKTGYIRDAGFH 259

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +  +   +   I+ VVMG  T +ER+ +   LI  +L
Sbjct: 260 LAATATRRGRRIIVVVMGGRTGRERNARVEALIDQYL 296


>gi|157803860|ref|YP_001492409.1| penicillin-binding protein DacF precursor [Rickettsia canadensis
           str. McKiel]
 gi|157785123|gb|ABV73624.1| Penicillin-binding protein DacF precursor [Rickettsia canadensis
           str. McKiel]
          Length = 306

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 99/248 (39%), Positives = 150/248 (60%), Gaps = 1/248 (0%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  +S+VID    ++      + P YPASLTK+MTLY++FE +++ KL L+ ++ VS  A
Sbjct: 34  PVQTSLVIDAKSGKVLQSHNSQIPIYPASLTKLMTLYLMFESIEAGKLSLDKKLFVSAKA 93

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           +   P KL LK     T  + I  LI +SAND +    E + GSEK FA LM+ KAK++G
Sbjct: 94  SQMPPCKLGLKAGETITVREAINGLIIKSANDAAVTVAENMKGSEKAFAHLMNVKAKQLG 153

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+NT +KNASG HD  Q TTARD A L + L++++P+YY  FS   F +R  II  HN++
Sbjct: 154 MKNTYFKNASGWHDPLQQTTARDIAKLAMALKRDYPKYYPLFSKTSFVFRGNIINGHNRV 213

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                  +G+KTG+   +G+N+VT+       ++AVV G  ++  RDQK + L+  +   
Sbjct: 214 TKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAVVTGSRSAVSRDQKMIGLLDHYFNI 273

Query: 291 KTLKHQQT 298
           K +  +++
Sbjct: 274 KPIAAKRS 281


>gi|165933122|ref|YP_001649911.1| D-alanyl-D-alanine serine-type carboxypeptidase [Rickettsia
           rickettsii str. Iowa]
 gi|165908209|gb|ABY72505.1| D-alanyl-D-alanine serine-type carboxypeptidase [Rickettsia
           rickettsii str. Iowa]
          Length = 306

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 95/234 (40%), Positives = 145/234 (61%), Gaps = 1/234 (0%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  +S+VID    ++      + R YPASLTK+MTLY++FE +++ KL L+ ++ VS  A
Sbjct: 34  PVQTSLVIDAKSGKVLQAHNSQIRIYPASLTKLMTLYLMFEAIEAGKLPLDKKLLVSAKA 93

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A   P KL LK     T  + I  LI +SAND +    E + GSEK FA LM+ KAK++G
Sbjct: 94  AKMPPCKLGLKAGETITVREAINGLIIKSANDAAVTVAEGMKGSEKAFAHLMNVKAKQLG 153

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+NT +KNASG HD  Q TTARD A L + L++++P++Y  F+   F +R  ++  HN++
Sbjct: 154 MKNTYFKNASGWHDPLQQTTARDIAKLAMALKRDYPKFYPLFAKTSFVFRGNVVNGHNRV 213

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                  +G+KTG+   +G+N+VT+       ++AVV G  +++ RDQK + L+
Sbjct: 214 TKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAVVTGGKSAESRDQKMMGLL 267


>gi|67459001|ref|YP_246625.1| penicillin-binding protein DacF precursor [Rickettsia felis
           URRWXCal2]
 gi|67004534|gb|AAY61460.1| Penicillin-binding protein DacF precursor [Rickettsia felis
           URRWXCal2]
          Length = 306

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 95/234 (40%), Positives = 144/234 (61%), Gaps = 1/234 (0%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  +S+VID    ++      + R YPASLTK+MTLY++FE +++ KL L+ ++ VS  A
Sbjct: 34  PVQTSLVIDAKSGKVLQAHNSQIRIYPASLTKLMTLYLMFEAIEAGKLPLDKKLLVSAKA 93

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           +   P KL LK     T  + I  LI +SAND +    E + GSEK FA LM+ KAK++G
Sbjct: 94  SKMPPCKLGLKAGETITVREAINGLIIKSANDAAVTVAEGMKGSEKAFAHLMNVKAKQLG 153

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+NT +KNASG HD  Q TTARD A L + L++++P+YY  F+   F +R  I+  HN++
Sbjct: 154 MKNTYFKNASGWHDPLQQTTARDMAKLAMALKRDYPKYYPLFAKTSFVFRGNIVNGHNRV 213

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                  +G+KTG+   +G+N++T+       ++AVV G  ++  RDQK + L+
Sbjct: 214 TKNYQGAEGMKTGFHTPAGYNLITTASRNGKSLIAVVTGGKSAASRDQKMMGLL 267


>gi|157828411|ref|YP_001494653.1| penicillin-binding protein dacF precursor [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|157800892|gb|ABV76145.1| penicillin-binding protein dacF precursor [Rickettsia rickettsii
           str. 'Sheila Smith']
          Length = 306

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 95/234 (40%), Positives = 145/234 (61%), Gaps = 1/234 (0%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  +S+VID    ++      + R YPASLTK+MTLY++FE +++ KL L+ ++ VS  A
Sbjct: 34  PVQTSLVIDAKSGKVLQAHNSQIRIYPASLTKLMTLYLMFEAIEAGKLPLDKKLLVSAKA 93

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A   P KL LK     T  + I  LI +SAND +    E + GSEK FA LM+ KAK++G
Sbjct: 94  AKMPPCKLGLKAGETITVREAINGLIIKSANDAAVTVAEGMKGSEKAFAHLMNVKAKQLG 153

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+NT +KNASG HD  Q TTARD A L + L++++P++Y  F+   F +R  ++  HN++
Sbjct: 154 MKNTYFKNASGWHDPLQQTTARDIAKLAMALKRDYPKFYPLFAKTSFVFRGNVVNGHNRV 213

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                  +G+KTG+   +G+N+VT+       ++AVV G  +++ RDQK + L+
Sbjct: 214 TKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAVVTGGKSAESRDQKMMGLL 267


>gi|114771313|ref|ZP_01448733.1| D-alanyl-D-alanine carboxypeptidase family protein [alpha
           proteobacterium HTCC2255]
 gi|114548238|gb|EAU51125.1| D-alanyl-D-alanine carboxypeptidase family protein [alpha
           proteobacterium HTCC2255]
          Length = 481

 Score =  185 bits (470), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 102/252 (40%), Positives = 151/252 (59%), Gaps = 3/252 (1%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYL 93
            FL +++I      +A P Y+++V+D    ++   +  + R +PASLTKMMTLY+ F+ +
Sbjct: 9   FFLVVVLIFTGVSAYAAP-YAALVMDARTGEVLHSRNADTRLHPASLTKMMTLYLAFKAV 67

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           +S  L L+ ++ VS+ AA++ PSKL L+          I A   +SAND +TA GE I+G
Sbjct: 68  ESGHLSLDEKVKVSRNAASEPPSKLGLRTGMRVKVRHLIRAAAVKSANDAATALGEAIAG 127

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           SE KF  LM+ +AK +GM+ T +KNA GL  +  ++TARD +ILG  L  +FP YY  FS
Sbjct: 128 SEAKFTALMTAQAKALGMKRTTFKNAHGLTARGHLSTARDMSILGRHLMYDFPDYYNLFS 187

Query: 214 IRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            R      R + N N +LL      DGIKTGYT  +GFN+V+S +  +  I+A V G  T
Sbjct: 188 RRNTDAGLRTVPNTNRRLLANYKGADGIKTGYTNAAGFNLVSSAQRGNKRIIATVFGGRT 247

Query: 273 SQERDQKALELI 284
            + R+ +  EL+
Sbjct: 248 WRSRNARVAELL 259


>gi|239947237|ref|ZP_04698990.1| penicillin-binding protein DacF [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921513|gb|EER21537.1| penicillin-binding protein DacF [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 306

 Score =  185 bits (470), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 96/234 (41%), Positives = 144/234 (61%), Gaps = 1/234 (0%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  +S+VID    ++      + R YPASLTK+MTLY++FE +++ KL L+ ++ VS  A
Sbjct: 34  PVQTSLVIDAKSGKVLQAHNSQIRIYPASLTKLMTLYLMFESIEAGKLPLDKKLLVSAKA 93

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           +   P KL LK     T  + I  LI +SAND +    E + GSEK FA LM+ KAK++G
Sbjct: 94  SKMPPCKLGLKAGETITVREAINGLIIKSANDAAVTVAENMKGSEKAFAHLMNVKAKQLG 153

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+NT +KNASG HD  Q TTARD A L + L++++P+YY  F+   F +R  I+  HN++
Sbjct: 154 MKNTYFKNASGWHDPLQQTTARDMAKLAMALKRDYPKYYPLFAKTSFVFRGNIVNGHNRV 213

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                  +G+KTG+   +G+N+VT+       ++AVV G  ++  RDQK + L+
Sbjct: 214 TKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAVVTGGKSAASRDQKMMGLL 267


>gi|254476532|ref|ZP_05089918.1| D-alanyl-D-alanine carboxypeptidase protein [Ruegeria sp. R11]
 gi|214030775|gb|EEB71610.1| D-alanyl-D-alanine carboxypeptidase protein [Ruegeria sp. R11]
          Length = 538

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 102/257 (39%), Positives = 155/257 (60%), Gaps = 4/257 (1%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYI 88
           ++G ++FL++IM +    + A P Y+++VID    ++   +  + R +PASLTKMMTLYI
Sbjct: 26  VLGLVVFLTMIM-AAPPNVGAAP-YAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYI 83

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            FE +++ ++ L+T++ +S+ AA + PSKL LK          I A   +SAND +TA G
Sbjct: 84  AFEAVRNGEITLDTKVKISRNAAAEPPSKLGLKAGQRIAFRYLIRAAAIKSANDAATAIG 143

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E +SGSE  FA  M+  AK +GM  T +KNA GL +   ++TARD   LG  +  ++P+Y
Sbjct: 144 ETLSGSEAAFARRMTRTAKALGMSRTTFKNAHGLTENGHMSTARDMTTLGRHILYDYPEY 203

Query: 209 YKYFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           Y  FS +      R + N N +LL      DGIKTGYTR +GFN+V S +  ++ ++A V
Sbjct: 204 YNLFSRKSADAGVRTVPNTNRRLLAAYRGADGIKTGYTRAAGFNLVASAQRGNERVIATV 263

Query: 268 MGMPTSQERDQKALELI 284
            G  +S  R+ K  EL+
Sbjct: 264 FGGKSSTSRNAKVAELL 280


>gi|34580546|ref|ZP_00142026.1| penicillin-binding protein dacF precursor [Rickettsia sibirica 246]
 gi|28261931|gb|EAA25435.1| penicillin-binding protein dacF precursor [Rickettsia sibirica 246]
          Length = 306

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 94/234 (40%), Positives = 144/234 (61%), Gaps = 1/234 (0%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  +S+VID    ++      + R YPASLTK+MTLY++FE +++ KL L+ ++ VS  A
Sbjct: 34  PVQTSLVIDAKSGKVLQAHNSQIRIYPASLTKLMTLYLMFEAIEAGKLPLDKKLLVSAKA 93

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           +   P KL LK     T  + I  LI +SAND +    E + GSEK FA LM+ KAK++G
Sbjct: 94  SKMPPCKLGLKAGETITVREAINGLIIKSANDAAVTVAEGMKGSEKAFAHLMNVKAKQLG 153

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+NT +KNASG HD  Q TTARD A L + L++++P++Y  F+   F +R  ++  HN++
Sbjct: 154 MKNTYFKNASGWHDPLQQTTARDMAKLAMALKRDYPKFYPLFAKTSFVFRGNVVNGHNRV 213

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                  +G+KTG+   +G+N+VT+       ++AVV G  ++  RDQK + L+
Sbjct: 214 TKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAVVTGGKSAASRDQKMMGLL 267


>gi|229586661|ref|YP_002845162.1| Penicillin-binding protein dacF precursor [Rickettsia africae
           ESF-5]
 gi|228021711|gb|ACP53419.1| Penicillin-binding protein dacF precursor [Rickettsia africae
           ESF-5]
          Length = 306

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 94/234 (40%), Positives = 144/234 (61%), Gaps = 1/234 (0%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  +S+VID    ++      + R YPASLTK+MTLY++FE +++ KL L+ ++ VS  A
Sbjct: 34  PVQTSLVIDAKSGKVLQAHNSQIRIYPASLTKLMTLYLMFEAIEAGKLPLDKKLLVSAKA 93

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           +   P KL LK     T  + I  LI +SAND +    E + GSEK FA LM+ KAK++G
Sbjct: 94  SKMPPCKLGLKAGETITVREAINGLIIKSANDAAVTVAEGMKGSEKAFAHLMNVKAKQLG 153

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+NT +KNASG HD  Q TTARD A L + L++++P++Y  F+   F +R  ++  HN++
Sbjct: 154 MKNTYFKNASGWHDPLQQTTARDMAKLAMALKRDYPKFYPLFAKTSFVFRGNVVNGHNRV 213

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                  +G+KTG+   +G+N+VT+       ++AVV G  ++  RDQK + L+
Sbjct: 214 TKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAVVTGGKSAASRDQKMMGLL 267


>gi|307825263|ref|ZP_07655483.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylobacter
           tundripaludum SV96]
 gi|307733719|gb|EFO04576.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylobacter
           tundripaludum SV96]
          Length = 395

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 96/246 (39%), Positives = 148/246 (60%), Gaps = 2/246 (0%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEY 92
           +L L+ + +   SE+ +  ++++I+ID  N N +   +  +  YPASLTK+MTLY+ F+ 
Sbjct: 8   LLILNAVWLFAVSEV-SYGRHAAIIIDADNGNVLHEVEATQSWYPASLTKLMTLYMTFDA 66

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           L++ ++HL+  +  S  A+ Q  SKL L+   + T E  ILA+ITRSAND S    E + 
Sbjct: 67  LKAGQIHLHDTLTASTRASQQPNSKLGLRRGEHLTVEDAILAIITRSANDASVVLAEHLG 126

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
            +E+ FA+ M+ KA  +GM NT + NA+GL +  Q+TT RD A+L    ++NFP+YY YF
Sbjct: 127 DTEENFAVNMTEKADSLGMYNTHFMNATGLPNNWQVTTPRDMAVLAWKAQRNFPEYYHYF 186

Query: 213 SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           S   F Y+   +   NK        +G+KTG+T  SGFN++ +       ++ VVMG  T
Sbjct: 187 SAHSFNYKGTELRGINKFTASYPGAEGMKTGFTCGSGFNLIGAAHQNGKHLIGVVMGGMT 246

Query: 273 SQERDQ 278
           S+ER Q
Sbjct: 247 SKERYQ 252


>gi|56698478|ref|YP_168853.1| D-alanyl-D-alanine carboxypeptidase family protein [Ruegeria
           pomeroyi DSS-3]
 gi|56680215|gb|AAV96881.1| D-alanyl-D-alanine carboxypeptidase family protein [Ruegeria
           pomeroyi DSS-3]
          Length = 477

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 102/256 (39%), Positives = 150/256 (58%), Gaps = 2/256 (0%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYII 89
           +G ILF +I MI+  S +     Y+++VID    ++      + R +PASLTKMMTLYI 
Sbjct: 13  LGLILFFAIWMIAALSGVARAAPYAAMVIDARTGEVLHATNADTRLHPASLTKMMTLYIA 72

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           FE +++ +L ++TQ+ +   AA + PSKL L+          + A   +SAND +T+ G 
Sbjct: 73  FEAVRNGELTMDTQVRIDPFAAKEPPSKLGLRAGQKIAFRYLVRAAAVKSANDAATSIGI 132

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            ISGSE  FA  M+  AK +GM  T +KNA GL +   ++TARD   LG  L  ++PQYY
Sbjct: 133 AISGSEAAFARRMNRTAKALGMTRTTFKNAHGLTESGHLSTARDMTTLGRHLLYDYPQYY 192

Query: 210 KYFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             FS R+     + + N N +LL+     DGIKTGYT+ +GFN+V S +  D+ ++A V 
Sbjct: 193 NLFSRRETSAGIKTVANTNRRLLDAYQGADGIKTGYTQAAGFNLVASAKRGDERVIATVF 252

Query: 269 GMPTSQERDQKALELI 284
           G  +S  R+ K  EL+
Sbjct: 253 GGKSSTARNAKVAELL 268


>gi|157964469|ref|YP_001499293.1| penicillin-binding protein dacF precursor [Rickettsia massiliae
           MTU5]
 gi|157844245|gb|ABV84746.1| Penicillin-binding protein dacF precursor [Rickettsia massiliae
           MTU5]
          Length = 313

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 94/234 (40%), Positives = 144/234 (61%), Gaps = 1/234 (0%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  +S+VID    ++      + R YPASLTK+MTLY++FE +++ KL L+ ++ VS  A
Sbjct: 41  PVQTSLVIDAKSGKVLQAHNSQIRIYPASLTKLMTLYLMFEAIEAGKLPLDKKLLVSAKA 100

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           +   P KL LK     T  + I  LI +SAND +    E + GSEK FA LM+ KAK++G
Sbjct: 101 SKMPPCKLGLKAGETITVREAINGLIIKSANDAAVTVAEGMKGSEKAFAHLMNVKAKQLG 160

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+NT +KNASG HD  Q TTARD A L + L++++P++Y  F+   F +R  ++  HN++
Sbjct: 161 MKNTYFKNASGWHDPLQQTTARDMAKLAMALKRDYPKFYPLFAKTSFVFRGNVVNGHNRV 220

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                  +G+KTG+   +G+N+VT+       ++AVV G  ++  RDQK + L+
Sbjct: 221 TKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAVVTGGKSAASRDQKMMGLL 274


>gi|15892459|ref|NP_360173.1| penicillin-binding protein dacF precursor [Rickettsia conorii str.
           Malish 7]
 gi|15619614|gb|AAL03074.1| penicillin-binding protein dacF precursor [Rickettsia conorii str.
           Malish 7]
          Length = 306

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 94/234 (40%), Positives = 145/234 (61%), Gaps = 1/234 (0%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  +S+VID    ++      + R YPASLTK+MTLY++FE +++ KL L+ ++ VS  A
Sbjct: 34  PVQTSLVIDAKSGKVLQAHNSQIRIYPASLTKLMTLYLMFEAIEAGKLPLDKKLLVSAKA 93

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           +   P KL LK     T  + I  LI +SANDV+    E + GSEK FA LM+ KAK++G
Sbjct: 94  SKMPPCKLGLKAGETITVREAINGLIIKSANDVAVTVAEGMKGSEKAFAHLMNVKAKQLG 153

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+NT +KNASG H+  Q TTARD A L + L++++P++Y  F+   F +R  ++  HN++
Sbjct: 154 MKNTYFKNASGWHNPLQQTTARDMAKLAMALKRDYPKFYPLFAKTSFVFRGNVVNGHNRV 213

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                  +G+KTG+   +G+N+VT+       ++AVV G  ++  RDQK + L+
Sbjct: 214 TKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAVVTGGKSAASRDQKMMGLL 267


>gi|329851344|ref|ZP_08266101.1| D-alanyl-D-alanine carboxypeptidase family protein [Asticcacaulis
           biprosthecum C19]
 gi|328840190|gb|EGF89762.1| D-alanyl-D-alanine carboxypeptidase family protein [Asticcacaulis
           biprosthecum C19]
          Length = 457

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 99/245 (40%), Positives = 146/245 (59%), Gaps = 3/245 (1%)

Query: 45  ASELHAKPKYSSIVID-VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A +L    +YS+IV+D V        K D  RYPASLTK+MTLY+ F+ L    L  +  
Sbjct: 11  AQDLSGDARYSAIVVDAVTGEVFYSAKADSARYPASLTKIMTLYMAFDALAMGTLKPDDT 70

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           I +S+ AA Q+P K+YLK       +  +  +   SAND++ A  E I G+E++FA LM+
Sbjct: 71  IVMSRNAAGQSPVKVYLKAGETIDVDSAMRLVALYSANDLAVALAEKIGGTEERFAALMT 130

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI 223
            KA+++GM  T + NASGL D  Q+++ARD AIL   + +++PQYY YFS+  + +R R 
Sbjct: 131 IKAQELGMGQTRFVNASGLPDPRQLSSARDMAILARAVMRDYPQYYDYFSLPNYTFRGRT 190

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT-SQERDQKALE 282
             NHN L N M  +DG+KTG+T  +G+N+V S       ++AV++G    SQ R+     
Sbjct: 191 YVNHNPLRN-MPGVDGMKTGFTNAAGYNLVASQVKDGHRLIAVMLGGNNKSQRREHVTFL 249

Query: 283 LITSF 287
           + T F
Sbjct: 250 MNTGF 254


>gi|315500037|ref|YP_004088840.1| serine-type d-ala-d-ala carboxypeptidase [Asticcacaulis excentricus
           CB 48]
 gi|315418049|gb|ADU14689.1| Serine-type D-Ala-D-Ala carboxypeptidase [Asticcacaulis excentricus
           CB 48]
          Length = 464

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 89/238 (37%), Positives = 146/238 (61%), Gaps = 2/238 (0%)

Query: 53  KYSSIVIDVNKNQM-TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +Y++IV+D    ++    + D PRYPASLTK+MTLY+ FE +   +L  +  I +S  AA
Sbjct: 56  RYAAIVVDAQSGEVFYAMRADSPRYPASLTKIMTLYMAFEEMAQGRLKPDDVITLSAHAA 115

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +  P+K  L+     T +  +  +   SAND++ A GE I GSE++FA LM+ KA+++GM
Sbjct: 116 SMPPTKSGLRAGDTITVDMAMRLIAAYSANDLAAALGEHIGGSEQRFAALMTVKAQELGM 175

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
             + + NASGL D  Q+++ARD A+L   + ++FPQYY+YF +R  ++  R  +NHN LL
Sbjct: 176 TRSNFVNASGLPDSRQVSSARDFAVLARAVMRDFPQYYEYFHVRSVQFNGRTYSNHNPLL 235

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
                +DG+KTG+   +G+N+V S R  +  ++AV++G     +R +    L+ +  +
Sbjct: 236 -AYPGVDGMKTGFINAAGYNLVASQRKGNHRLIAVMLGGSNKAQRREHVTSLMNTGFD 292


>gi|91205746|ref|YP_538101.1| penicillin-binding protein dacF precursor [Rickettsia bellii
           RML369-C]
 gi|157827127|ref|YP_001496191.1| penicillin-binding protein dacF precursor [Rickettsia bellii OSU
           85-389]
 gi|91069290|gb|ABE05012.1| Penicillin-binding protein dacF precursor [Rickettsia bellii
           RML369-C]
 gi|157802431|gb|ABV79154.1| Penicillin-binding protein dacF precursor [Rickettsia bellii OSU
           85-389]
          Length = 307

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 101/253 (39%), Positives = 148/253 (58%), Gaps = 1/253 (0%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  +S+VID    ++      + R YPASLTK+MTLY++FE ++  KL L+ ++ VS  A
Sbjct: 36  PVQTSLVIDAKTGKVLHAHNSQIRIYPASLTKLMTLYVMFELIELGKLSLDKKLLVSAKA 95

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A   P K+ L+     TT + I  LI +SAND +    E I  SEK FA LM+ KAK++G
Sbjct: 96  AKMPPCKIGLRAGDTITTREAINMLIVKSANDAAVTVAENIRLSEKDFAHLMNIKAKQLG 155

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+NT +KNASG HD  Q TTARD A L + +++ FP+YY  FS   F +R  +I  HNK+
Sbjct: 156 MKNTYFKNASGWHDPLQQTTARDMAKLTLAIKQKFPKYYPLFSKTSFVFRGNVINGHNKI 215

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                  +G+KTG+   +G+N+VT+       ++AVV G  ++  RDQK + L+      
Sbjct: 216 TKNYAGAEGMKTGFHTPAGYNLVTTASRNGKSLIAVVTGGRSAGSRDQKMIGLLDQHFNV 275

Query: 291 KTLKHQQTHRKDN 303
            + K + T   +N
Sbjct: 276 ASAKPKVTLASNN 288


>gi|238650925|ref|YP_002916781.1| penicillin-binding protein dacF precursor [Rickettsia peacockii
           str. Rustic]
 gi|238625023|gb|ACR47729.1| penicillin-binding protein dacF precursor [Rickettsia peacockii
           str. Rustic]
          Length = 306

 Score =  182 bits (461), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 93/234 (39%), Positives = 144/234 (61%), Gaps = 1/234 (0%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  +S+VID    ++      + + YPASLTK+MTLY++FE +++ KL L+ ++ VS  A
Sbjct: 34  PVQTSLVIDAKSGKVLQAHNSQIQIYPASLTKLMTLYLMFEAIEAGKLPLDKKLLVSAKA 93

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           +   P KL LK     T  + I  LI +SAND +    E + GSEK FA LM+ KAK++G
Sbjct: 94  SKMPPCKLGLKAGETITVREAINGLIIKSANDAAVTVAEGMKGSEKAFAHLMNVKAKQLG 153

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+NT +KNASG HD  Q TTARD A L + L++++P++Y  F+   F +R  ++  HN++
Sbjct: 154 MKNTYFKNASGWHDPLQQTTARDMAKLAMALKRDYPKFYPLFAKTSFVFRGNVVNGHNRV 213

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                  +G+KTG+   +G+N+VT+       ++AVV G  ++  RDQK + L+
Sbjct: 214 TKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAVVTGGKSAASRDQKMMGLL 267


>gi|86139111|ref|ZP_01057682.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp.
           MED193]
 gi|85824342|gb|EAQ44546.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp.
           MED193]
          Length = 554

 Score =  182 bits (461), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 102/259 (39%), Positives = 153/259 (59%), Gaps = 4/259 (1%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTL 86
           + +MG +LFL + +I   ++  A P Y+++V+D    ++   +  + R +PASLTKMMTL
Sbjct: 24  LWIMGVVLFLGMALIP-PTQAQAAP-YAAVVVDARTGEVLHSRNADARLHPASLTKMMTL 81

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           YI FE +++ ++ L+ ++ +SK AA + PSKL LK          I A   +SAND +TA
Sbjct: 82  YIAFEAVRNGEISLDQKVRISKNAAAEPPSKLGLKSGQRIAFRYLIRASAVKSANDAATA 141

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
            GE ISGSE  FA  M+  AK +GM  T +KNA GL +   ++TARD   LG  +  ++P
Sbjct: 142 IGEAISGSEAAFARRMTRTAKALGMSRTTFKNAHGLTEAGHLSTARDMTKLGRHILYDYP 201

Query: 207 QYYKYFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           +YY  FS        + + N N +LL      DGIKTGYTR +G N+V S +  D+ I+A
Sbjct: 202 EYYHLFSRTSIDAGVKTVPNTNRRLLASYKGADGIKTGYTRAAGSNLVASAKRGDERIIA 261

Query: 266 VVMGMPTSQERDQKALELI 284
            V G  +S  R+ + +EL+
Sbjct: 262 TVFGGKSSTSRNARIVELL 280


>gi|302382572|ref|YP_003818395.1| serine-type D-Ala-D-Ala carboxypeptidase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193200|gb|ADL00772.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 514

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 95/243 (39%), Positives = 142/243 (58%), Gaps = 1/243 (0%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +Y++IV+D    ++   +  D  RYPAS+TKMMTLY++FE L+   +HL+  I VS  AA
Sbjct: 42  RYAAIVVDAGTGEVLFARHADSQRYPASVTKMMTLYLVFEALEKGTVHLDDVITVSPLAA 101

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +Q PSKL L        +  + A   RSAND++    E I GS+ +FA L + KA+++GM
Sbjct: 102 SQPPSKLGLAAGQTIRLDDAMRATTVRSANDMAMVLAEHIGGSQARFAALATLKAQELGM 161

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
             T Y N +GL D  Q+T+ARD AIL   + +++PQYY YF I  + Y+ R   N N LL
Sbjct: 162 GQTRYVNPNGLPDSRQLTSARDLAILSRAIMRDYPQYYSYFGIHDWTYQGREYRNTNGLL 221

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
              +  DGIKTG+T  SG+N+  S       ++ +V+G  +S  R+     L+ +  E +
Sbjct: 222 LGGNGYDGIKTGFTNASGYNLAASAVRGGKRVITIVLGGRSSITRNAHVAALMDTGFEVE 281

Query: 292 TLK 294
           T +
Sbjct: 282 TRR 284


>gi|297183970|gb|ADI20090.1| d-alanyl-d-alanine carboxypeptidase [uncultured alpha
           proteobacterium EB080_L06A09]
          Length = 481

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/283 (37%), Positives = 160/283 (56%), Gaps = 9/283 (3%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYL 93
             L ++++     ++  P Y+++V+D    ++   +  + R +PASLTKMMTLY+ F+ +
Sbjct: 9   FILVVVLLFTGVSVYGAP-YAALVMDARTGEVLHSRNADTRLHPASLTKMMTLYLAFKAV 67

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           +S  L L+ ++ VS+ AA++ PSKL L+          I A   +SAND +TA GE I+G
Sbjct: 68  ESGHLSLDEKVKVSRNAASEPPSKLGLRTGMRVKVRHLIRAAAVKSANDAATALGEAIAG 127

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           SE KF  LM+ +AK +GM+ T +KNA GL  K  ++TARD +ILG  L  +FP YY  FS
Sbjct: 128 SEVKFTTLMTAQAKALGMKRTTFKNAHGLTAKGHLSTARDMSILGRHLMYDFPDYYNLFS 187

Query: 214 IRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            R      R + N N +LL      DGIKTGYT  +GFN+V+S +  +  I+A V G  T
Sbjct: 188 RRNTDAGLRTVPNTNRRLLANYKGADGIKTGYTNAAGFNLVSSAQRGNKRIIATVFGGRT 247

Query: 273 SQERDQKALELITSFLEKKTLKHQQTH------RKDNLSSTSL 309
            + R+ +  EL+     +   K+  T       R + L S +L
Sbjct: 248 WKSRNARVAELLDMGFNRTPKKYTSTAIPARPTRGNQLESVAL 290


>gi|220926507|ref|YP_002501809.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Methylobacterium nodulans ORS 2060]
 gi|219951114|gb|ACL61506.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Methylobacterium nodulans ORS 2060]
          Length = 490

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 141/229 (61%), Gaps = 3/229 (1%)

Query: 57  IVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +V+DV+  ++  + Q   +P YPAS+TK+MT Y+  + ++  +  ++  + +S  AA++ 
Sbjct: 34  LVVDVDSGKVL-YSQAATDPWYPASITKLMTTYVALDLVRQGRASMDQLLTISPEAASEP 92

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           PSK+  K  T  T +  +  ++ +SANDV+ A  E ++GS   FA+LM+  A+++GM+++
Sbjct: 93  PSKMGFKPGTQITLDNALKIIMVKSANDVAWAIAEGLAGSVDNFAVLMNETAQRLGMRDS 152

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            + N +GL D  Q T+ARD AILG  L ++FP     FSI   ++   ++ NHN LL + 
Sbjct: 153 RWVNPNGLPDPRQWTSARDMAILGRALLRDFPDNRDLFSISAIQFGRAVMPNHNGLLGRY 212

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
             +DG+KTG+    GFN+V S       I+ VVMG PT++ERD KA +L
Sbjct: 213 AGVDGMKTGFICAGGFNVVASATRNGRRIITVVMGQPTARERDLKAADL 261


>gi|170744628|ref|YP_001773283.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp.
           4-46]
 gi|168198902|gb|ACA20849.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp.
           4-46]
          Length = 506

 Score =  179 bits (453), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 140/229 (61%), Gaps = 3/229 (1%)

Query: 57  IVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +V+DV+  ++  + Q   +P YPAS+TK+MT Y+  + ++  +  ++  + +S  AA + 
Sbjct: 34  LVVDVDSGKVL-YSQAATDPWYPASITKLMTTYVALDLVRQGRASMDQLLTISAEAAAEP 92

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           PSK+  +  T  T +  +  ++ +SANDV+ A GE + GS   FA LM+  A+++GM+++
Sbjct: 93  PSKMGFRPGTQLTLDNALKIIMVKSANDVAWAIGENLGGSIDNFAALMNETAQRLGMRDS 152

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            + N +GL D  Q T+ARD AILG  L ++FP+    FSI   ++   ++ NHN LL + 
Sbjct: 153 HWYNPNGLPDPRQWTSARDMAILGRALLRDFPENRDLFSISAIQFGRAVMANHNGLLGRY 212

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
             +DG+KTG+    GFN+V S       I+ VVMG PT++ERD KA +L
Sbjct: 213 AGVDGMKTGFICAGGFNVVASATRNGRRIITVVMGQPTARERDLKAADL 261


>gi|89056340|ref|YP_511791.1| Serine-type D-Ala-D-Ala carboxypeptidase [Jannaschia sp. CCS1]
 gi|88865889|gb|ABD56766.1| Serine-type D-Ala-D-Ala carboxypeptidase [Jannaschia sp. CCS1]
          Length = 468

 Score =  178 bits (452), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 103/272 (37%), Positives = 157/272 (57%), Gaps = 20/272 (7%)

Query: 28  IQLMG-KILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMT 85
           + L+G +ILF ++      ++++A P Y+++V+D    ++   +  + R +PASLTKMMT
Sbjct: 8   VALLGVQILFGAV----APAQVNAAP-YAAMVMDARNGEVLHSRNADTRLHPASLTKMMT 62

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           LYI FE ++  ++ L+T++ VS  AA + PS+L L   T       + A   RS ND +T
Sbjct: 63  LYIAFEAIRLGEITLDTEVTVSANAAAEPPSRLGLSAGTTIRLRYLLRAAAIRSGNDAAT 122

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A GE ISGSE  FA  M+  A+ +GM  T ++NA GL +   ++TARD  +LG  L  ++
Sbjct: 123 AIGEAISGSEAAFARRMTRTARALGMTRTTFRNAHGLTEDGHLSTARDMTMLGRRLVYDY 182

Query: 206 PQYYKYFS-------IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
           PQYY  FS       I   R  NR++      L      DGIKTGYTR +GFN+V S + 
Sbjct: 183 PQYYNLFSRVTADAGIATIRNTNRVV------LTTYRGADGIKTGYTRAAGFNLVASAQR 236

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            ++ I+A V G  +S  R+Q+ +EL+    E+
Sbjct: 237 GEERIIATVFGGRSSAWRNQRVMELLDMGFER 268


>gi|254464797|ref|ZP_05078208.1| D-alanyl-D-alanine carboxypeptidase protein [Rhodobacterales
           bacterium Y4I]
 gi|206685705|gb|EDZ46187.1| D-alanyl-D-alanine carboxypeptidase protein [Rhodobacterales
           bacterium Y4I]
          Length = 555

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/269 (37%), Positives = 148/269 (55%), Gaps = 2/269 (0%)

Query: 18  PYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-Y 76
           P    Y +         + L+++ + +A +      Y+++VID    ++      + R +
Sbjct: 9   PASGRYFRTRFLWAAAGILLAVLGLWLAPQRAQAAPYAAMVIDARTGEVLHSSNADTRLH 68

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTKMMTLYI FE +++ ++ L+T++ +S+ AA + PSKL LK          I A  
Sbjct: 69  PASLTKMMTLYIAFEAVRNGEITLDTKVKISRNAAAEPPSKLGLKPGQRIAFRYLIRAAA 128

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +SAND +TA GE +SGSE  F   M+  AK +GM  T +KNA GL     ++TA D   
Sbjct: 129 VKSANDAATAIGETLSGSEAAFTRRMNRTAKALGMTRTTFKNAHGLTASGHLSTASDMTT 188

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           LG  L  ++P+YY  FS R      R + N N +LL      DGIKTGYTR +GFN+V S
Sbjct: 189 LGRHLLYDYPEYYNLFSRRSTDAGIREVPNTNRRLLAAYRGADGIKTGYTRAAGFNLVAS 248

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +  D+ I+A V G  +S  R+ K  EL+
Sbjct: 249 AKRGDERIIATVFGGKSSTSRNAKVAELL 277


>gi|188580422|ref|YP_001923867.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi
           BJ001]
 gi|179343920|gb|ACB79332.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi
           BJ001]
          Length = 499

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/211 (40%), Positives = 130/211 (61%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           +P YPAS+TK+MT Y+  + ++  K+ L+T + VS  AA + PSK+  K  T  T +  +
Sbjct: 48  DPWYPASITKLMTTYVALDMVRQGKVSLDTLLTVSPAAAAEPPSKMGFKPGTQITLDNAL 107

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             ++ +SANDVS A GE + GS + FA +M+  A +IGM+ + + N +GL +  Q T+AR
Sbjct: 108 KIIMVKSANDVSWAIGEGLGGSVEGFADMMNETAHRIGMRESRWYNPNGLPEPRQWTSAR 167

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           D AIL   L ++FP     FSI   ++   ++ NHN LL +    DG+KTG+  + GFN+
Sbjct: 168 DMAILARALMRDFPNQQALFSISAIQFGKSVMANHNGLLGRYPGADGMKTGFICSGGFNV 227

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           V +       I+AVVMG P+++ERD KA +L
Sbjct: 228 VATATRGGRRIIAVVMGQPSARERDIKAADL 258


>gi|218529374|ref|YP_002420190.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           chloromethanicum CM4]
 gi|218521677|gb|ACK82262.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           chloromethanicum CM4]
          Length = 496

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 93/257 (36%), Positives = 149/257 (57%), Gaps = 8/257 (3%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTL 86
           +L+G +  L + M   AS + A      +V+D    ++  + Q   +P YPAS+TK+MT 
Sbjct: 8   RLIGSLTALGL-MAGAASAVTAP----ILVVDAESGKVL-YSQGATDPWYPASITKLMTT 61

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y+  + ++  K+ L+T + VS  AA + PSK+  K  T  T +  +  ++ +SANDVS A
Sbjct: 62  YVALDMVRQGKVSLDTLLTVSPAAAAEPPSKMGFKPGTQITLDNALKIIMVKSANDVSWA 121

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
            GE + GS + FA +M+  A +IGM+ + + N +GL +  Q T+ARD A+L   L ++FP
Sbjct: 122 IGEGLGGSVEGFADMMNETAHRIGMRESRWYNPNGLPEPRQWTSARDMAVLARALMRDFP 181

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
                FSI   ++   ++ NHN LL +    DG+KTG+  + GFN+V +       I+ V
Sbjct: 182 NQQNLFSISAIQFGKSVMANHNGLLGRYPGADGMKTGFICSGGFNVVATATRGGRRIITV 241

Query: 267 VMGMPTSQERDQKALEL 283
           VMG P+++ERD KA +L
Sbjct: 242 VMGQPSARERDIKAADL 258


>gi|240137704|ref|YP_002962175.1| serine-type D-alanyl-D-alanine carboxypeptidase precursor
           [Methylobacterium extorquens AM1]
 gi|240007672|gb|ACS38898.1| serine-type D-alanyl-D-alanine carboxypeptidase precursor
           [Methylobacterium extorquens AM1]
          Length = 501

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 93/257 (36%), Positives = 149/257 (57%), Gaps = 8/257 (3%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTL 86
           +L+G +  L + M   AS + A      +V+D    ++  + Q   +P YPAS+TK+MT 
Sbjct: 8   RLIGSLTALGL-MAGAASAVTAP----ILVVDAESGKVL-YSQGATDPWYPASITKLMTT 61

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y+  + ++  K+ L+T + VS  AA + PSK+  K  T  T +  +  ++ +SANDVS A
Sbjct: 62  YVALDMVRQGKVSLDTLLTVSPAAAAEPPSKMGFKPGTQITLDNALKIIMVKSANDVSWA 121

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
            GE + GS + FA +M+  A +IGM+ + + N +GL +  Q T+ARD A+L   L ++FP
Sbjct: 122 IGEGLGGSVEGFADMMNETAHRIGMRESRWYNPNGLPEPRQWTSARDMAVLARALMRDFP 181

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
                FSI   ++   ++ NHN LL +    DG+KTG+  + GFN+V +       I+ V
Sbjct: 182 NQQNLFSISAIQFGKSVMANHNGLLGRYPGADGMKTGFICSGGFNVVATATRGGRRIITV 241

Query: 267 VMGMPTSQERDQKALEL 283
           VMG P+++ERD KA +L
Sbjct: 242 VMGQPSARERDIKAADL 258


>gi|254560273|ref|YP_003067368.1| serine-type D-alanyl-D-alanine carboxypeptidase [Methylobacterium
           extorquens DM4]
 gi|254267551|emb|CAX23393.1| serine-type D-alanyl-D-alanine carboxypeptidase precursor
           [Methylobacterium extorquens DM4]
          Length = 501

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 93/257 (36%), Positives = 149/257 (57%), Gaps = 8/257 (3%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTL 86
           +L+G +  L + M   AS + A      +V+D    ++  + Q   +P YPAS+TK+MT 
Sbjct: 8   RLIGSLTALGL-MAGAASAVTAP----ILVVDAESGKVL-YSQGATDPWYPASITKLMTT 61

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y+  + ++  K+ L+T + VS  AA + PSK+  K  T  T +  +  ++ +SANDVS A
Sbjct: 62  YVALDMVRQGKVSLDTLLTVSPAAAAEPPSKMGFKPGTQITLDNALKIIMVKSANDVSWA 121

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
            GE + GS + FA +M+  A +IGM+ + + N +GL +  Q T+ARD A+L   L ++FP
Sbjct: 122 IGEGLGGSVEGFADMMNETAHRIGMRESRWYNPNGLPEPRQWTSARDMAVLARALMRDFP 181

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
                FSI   ++   ++ NHN LL +    DG+KTG+  + GFN+V +       I+ V
Sbjct: 182 NQQNLFSISAIQFGKSVMANHNGLLGRYPGADGMKTGFICSGGFNVVATATRGGRRIITV 241

Query: 267 VMGMPTSQERDQKALEL 283
           VMG P+++ERD KA +L
Sbjct: 242 VMGQPSARERDIKAADL 258


>gi|163850650|ref|YP_001638693.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           extorquens PA1]
 gi|163662255|gb|ABY29622.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           extorquens PA1]
          Length = 501

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 93/257 (36%), Positives = 149/257 (57%), Gaps = 8/257 (3%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTL 86
           +L+G +  L + M   AS + A      +V+D    ++  + Q   +P YPAS+TK+MT 
Sbjct: 8   RLIGSLTALGL-MAGAASAVTAP----ILVVDAESGKVL-YSQGATDPWYPASITKLMTT 61

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y+  + ++  K+ L+T + VS  AA + PSK+  K  T  T +  +  ++ +SANDVS A
Sbjct: 62  YVALDMVRQGKVSLDTLLTVSPAAAAEPPSKMGFKPGTQITLDNALKIIMVKSANDVSWA 121

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
            GE + GS + FA +M+  A +IGM+ + + N +GL +  Q T+ARD A+L   L ++FP
Sbjct: 122 IGEGLGGSVEGFADMMNETAHRIGMRESRWYNPNGLPEPRQWTSARDMAVLARALMRDFP 181

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
                FSI   ++   ++ NHN LL +    DG+KTG+  + GFN+V +       I+ V
Sbjct: 182 NQQNLFSISAIQFGKSVMANHNGLLGRYPGADGMKTGFICSGGFNVVATATRGGRRIITV 241

Query: 267 VMGMPTSQERDQKALEL 283
           VMG P+++ERD KA +L
Sbjct: 242 VMGQPSARERDIKAADL 258


>gi|312113134|ref|YP_004010730.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311218263|gb|ADP69631.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 584

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 88/224 (39%), Positives = 146/224 (65%), Gaps = 1/224 (0%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D +  + +      +PR+PAS+TK+MTLY++F+ L+  KL++NT++ VS  AA+Q
Sbjct: 30  SAMVVDFHTGRILISRNATDPRFPASVTKVMTLYLLFDALRDGKLNMNTKLRVSAYAASQ 89

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           +P+KL L      T    I A++T+SAND++    E ++GSE++FA  M+ KA+ IGM N
Sbjct: 90  SPTKLGLDAGDTITVSDVIGAIVTKSANDMAVVVAEALAGSEEEFARRMTQKARTIGMLN 149

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           T ++NASGL +  Q TTA+D  IL   +  + P+  + FS + F+Y   I  NHN +L  
Sbjct: 150 TTFRNASGLPNSEQRTTAQDLVILARSVITDHPERSRVFSTKYFQYDGEIYRNHNTMLFS 209

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
              ++G+KTG+T  SGFN++ + R  +  ++AVV+G  +++ R+
Sbjct: 210 YEGMEGMKTGFTSASGFNLLATARRGEKRLIAVVLGGSSARVRN 253


>gi|163759954|ref|ZP_02167038.1| putative penicillin-binding protein [Hoeflea phototrophica DFL-43]
 gi|162282912|gb|EDQ33199.1| putative penicillin-binding protein [Hoeflea phototrophica DFL-43]
          Length = 371

 Score =  175 bits (444), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 89/234 (38%), Positives = 137/234 (58%), Gaps = 1/234 (0%)

Query: 56  SIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           SI +DV   ++   +    R YPASLTK+MT Y+ F  ++S ++ ++T + +S  AA + 
Sbjct: 5   SIAVDVGSGRVIAHEDAFQRWYPASLTKIMTAYVAFSAVKSGQMSMDTPVTMSIHAAKEP 64

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           PSK+Y K    F  +  +  L+ +SANDV+ A  E +SGSE+ F   M+  AK +GMQ T
Sbjct: 65  PSKMYFKPGERFPLDSALKYLMVKSANDVAVAIAEAVSGSEEAFVREMNATAKALGMQAT 124

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            + N +GL    Q TTARD A+L    R+NFP+Y +YF    F    ++ TN+N L+ + 
Sbjct: 125 RFVNPNGLPGSGQYTTARDMAVLAAAARRNFPEYAQYFGYEGFSVGKQVHTNYNLLIGRF 184

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
              DG+KTG+   SGFN V+S       +V+VV+G P+   R +++  L+ + L
Sbjct: 185 QGADGMKTGFICASGFNQVSSATRNGRTVVSVVLGAPSQTARAERSAALLQAAL 238


>gi|259417976|ref|ZP_05741895.1| serine-type D-Ala-D-Ala carboxypeptidase [Silicibacter sp.
           TrichCH4B]
 gi|259346882|gb|EEW58696.1| serine-type D-Ala-D-Ala carboxypeptidase [Silicibacter sp.
           TrichCH4B]
          Length = 559

 Score =  175 bits (444), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 98/252 (38%), Positives = 150/252 (59%), Gaps = 2/252 (0%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYL 93
           L L++ ++++  E  A   Y+++V+D    ++   +  + R +PASLTKMMTLYI FE +
Sbjct: 46  LTLAVGLVAVVPEQAAAAPYAAMVMDARTGEVLHSRNADTRLHPASLTKMMTLYIAFEAV 105

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           ++ ++ L+T+I VS+ A  + PS+L L+          I A   +SAND +TA GE ISG
Sbjct: 106 RNGEISLDTEITVSRNAEAEPPSELGLRRGQKIALRYLIRAAAVKSANDAATAIGEAISG 165

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           SE  FA  M+  AK +GM  T +KNA GL     ++TARD  ILG  +  ++P+YY  FS
Sbjct: 166 SEAAFARRMNRTAKALGMTRTTFKNAHGLTANGHMSTARDMTILGRHMLYDYPEYYNLFS 225

Query: 214 IRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            +      +++ N N + L      DGIKTGYTR +GFN+V+S +  D+ I+A V G  +
Sbjct: 226 RKSTNAGTKVVYNTNRRFLAAYRGADGIKTGYTRAAGFNLVSSAKRGDERIIATVFGGQS 285

Query: 273 SQERDQKALELI 284
           +  R+ K  EL+
Sbjct: 286 TAARNAKVAELL 297


>gi|84500362|ref|ZP_00998611.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanicola
           batsensis HTCC2597]
 gi|84391315|gb|EAQ03647.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanicola
           batsensis HTCC2597]
          Length = 477

 Score =  175 bits (443), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 98/240 (40%), Positives = 142/240 (59%), Gaps = 3/240 (1%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E  A P Y+++V+D    ++      + R +PASLTKMMTLYI FE +++ ++ L+T + 
Sbjct: 11  EAQAAP-YAAMVMDARSGEVLHSSNADARLHPASLTKMMTLYIAFEAVRNGEITLDTPVR 69

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           +S+ AA + PSKL L   +       I A   +SAND +TA GE I GSE +FA  M+  
Sbjct: 70  ISRNAAAEPPSKLGLAAGSKIKLRYLIRASAVKSANDAATAIGEAIEGSEARFARRMTRT 129

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
           AK +GM  T +KNA GL +   ++TARD  ILG  L  ++P+YY  FS  +     + ++
Sbjct: 130 AKALGMTRTTFKNAHGLTESGHLSTARDMTILGRHLLFDYPEYYNLFSRVQTHAGIKKVS 189

Query: 226 NHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N +LL      DGIKTGYTR +GFN+V S    ++ I+A V G  +S  R+ K  EL+
Sbjct: 190 NTNRRLLGSYRGADGIKTGYTRAAGFNLVASAERGNERIIATVFGGRSSASRNAKVAELL 249


>gi|126739529|ref|ZP_01755221.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp.
           SK209-2-6]
 gi|126719175|gb|EBA15885.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp.
           SK209-2-6]
          Length = 493

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 94/233 (40%), Positives = 140/233 (60%), Gaps = 2/233 (0%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           Y+++V+D    ++   +  + R +PASLTKMMTLYI FE +++ ++ L+T++ +SK AA 
Sbjct: 5   YAAMVLDARTGEVLHSRNADTRLHPASLTKMMTLYIAFEAIRNGEISLDTKVRISKNAAA 64

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           + PSKL L+          I A   +SAND +TA GE +SGSE  FA  M+  AK +GM 
Sbjct: 65  EPPSKLGLRSGQRIALRYLIRAAAVKSANDAATAIGEALSGSEAAFARRMTRTAKALGMS 124

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN-KLL 231
            T +KNA GL +   ++TARD   LG  +  ++P+YY  FS +      + + N N +LL
Sbjct: 125 RTSFKNAHGLTESGHMSTARDMTTLGRHILYDYPEYYNLFSRKTADAGVKTVPNTNRRLL 184

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                 DGIKTGYTR +GFN+V S +  ++ I+A V G  +S  R+ K  EL+
Sbjct: 185 AAYKGADGIKTGYTRAAGFNLVASAKRGNERIIATVFGGKSSTSRNAKVAELL 237


>gi|126732363|ref|ZP_01748163.1| D-alanyl-D-alanine carboxypeptidase family protein [Sagittula
           stellata E-37]
 gi|126707232|gb|EBA06298.1| D-alanyl-D-alanine carboxypeptidase family protein [Sagittula
           stellata E-37]
          Length = 479

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/257 (39%), Positives = 150/257 (58%), Gaps = 6/257 (2%)

Query: 39  IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKK 97
           + ++ MA  + A P Y+++V+D    ++   +  + R +PASLTKMMTLYI+FE +Q+ +
Sbjct: 1   MALLPMA--VKAAP-YAAMVMDARTGKVLHAQNADTRLHPASLTKMMTLYIVFEAVQNGE 57

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           L ++T + VSK AA + PSKL L+E         + A   +SAND +TA GE + GSE  
Sbjct: 58  LTMDTLVTVSKNAAAEPPSKLGLREGQKIKLRYLVRAAAVKSANDAATAIGEAVEGSEAA 117

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           FA  M+  AK IGM  T +KNA GL  +  ++TARD  ILG  +  ++P+YY  FS    
Sbjct: 118 FARRMNRTAKAIGMTRTTFKNAHGLTAEGHLSTARDMTILGRHVIYDYPEYYNLFSRVTA 177

Query: 218 RYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
               R +++ N +LL      DGIKTGYTR +GFN+V S     + ++A V G  ++  R
Sbjct: 178 DAGVRTVSHTNRRLLQSYKGADGIKTGYTRAAGFNLVASAERGRERVIATVFGGQSTASR 237

Query: 277 DQKALELIT-SFLEKKT 292
           + K  EL+   F E  T
Sbjct: 238 NAKVAELLDLGFRESPT 254


>gi|254511152|ref|ZP_05123219.1| D-alanyl-D-alanine carboxypeptidase family protein
           [Rhodobacteraceae bacterium KLH11]
 gi|221534863|gb|EEE37851.1| D-alanyl-D-alanine carboxypeptidase family protein
           [Rhodobacteraceae bacterium KLH11]
          Length = 448

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 100/253 (39%), Positives = 148/253 (58%), Gaps = 4/253 (1%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEY 92
           I FL +++ +    L A   Y+++VID    ++   +  + R +PASLTKMMTLYI FE 
Sbjct: 6   IAFLWLLVFAPLKGLAAP--YAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYIAFEA 63

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           +++ ++ L+T + ++K A+++ PSKL L+          I A   +SAND +TA G  IS
Sbjct: 64  VRNGEITLDTPVRITKKASSEPPSKLGLRTGQTIQFRYLIRAAAVKSANDAATAIGIAIS 123

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           GSE  FA  M+  AK +GM  T +KNA GL +   ++TARD   LG  L  ++PQYY  F
Sbjct: 124 GSEAAFARRMTRTAKAMGMSRTTFKNAHGLTETGHLSTARDMTTLGRHLLYDYPQYYNLF 183

Query: 213 SIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           S +      + + N N +LL      DGIKTGYTR +GFN+V S + KD+ I+A V G  
Sbjct: 184 SRQSTHAGIKTVPNTNRRLLAAYKGADGIKTGYTRAAGFNLVASAKRKDERIIATVFGGK 243

Query: 272 TSQERDQKALELI 284
           +   R+ +  EL+
Sbjct: 244 SGASRNARVAELL 256


>gi|254487632|ref|ZP_05100837.1| D-alanyl-D-alanine carboxypeptidase protein [Roseobacter sp.
           GAI101]
 gi|214044501|gb|EEB85139.1| D-alanyl-D-alanine carboxypeptidase protein [Roseobacter sp.
           GAI101]
          Length = 470

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 96/239 (40%), Positives = 138/239 (57%), Gaps = 14/239 (5%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           Y++ VID    ++   +  E R +PASLTKMMTLYI FE ++  ++ L++Q+ +S  AA+
Sbjct: 12  YAAYVIDARSGEVLHSRNAETRLHPASLTKMMTLYIAFEAIKRGEISLDSQVKISSHAAS 71

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           + PSKL LK          I A   +SAND +TA GE I GSE KFA  M+  AK +GM 
Sbjct: 72  EPPSKLGLKSGQTIALRYLIRAAAVKSANDAATAIGEAIEGSEAKFARRMNRTAKALGMT 131

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-------IRKFRYRNRIIT 225
            T +KNA GL +   ++TARD  ++G  L  +FP+YY  FS       +RK  + NR   
Sbjct: 132 KTTFKNAHGLTEAGHMSTARDMTMMGRHLLYDFPEYYNLFSRITADAGVRKVSHTNR--- 188

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
              + L+     DGIKTGYTR +GFN+V S    ++ ++  V G  ++  R+ K  EL+
Sbjct: 189 ---RFLSSYKGADGIKTGYTRAAGFNLVASAERGNERVIVTVFGGTSTSARNAKVAELM 244


>gi|149916443|ref|ZP_01904962.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp.
           AzwK-3b]
 gi|149809713|gb|EDM69567.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp.
           AzwK-3b]
          Length = 482

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 98/259 (37%), Positives = 146/259 (56%), Gaps = 14/259 (5%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEY 92
           I F +I M+ +         Y+++V+D    ++      + R +PASLTKMMTLY++FE 
Sbjct: 14  IAFATIWMLVVVPLSAIAAPYAAMVMDARSGEVLHAHNADTRLHPASLTKMMTLYVVFEA 73

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           +++ ++ L+T + +S+ AA++ PSKL L+          I A   +SAND +TA  E I 
Sbjct: 74  VENGEIGLDTMVTISQHAASEPPSKLGLRAGQKIRLRHLIRAAAIKSANDAATALAEAIE 133

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           GSE +FA  M+  AK +GM  T +KNA GL +   ++TARD  ILG  +  ++P+YY  F
Sbjct: 134 GSEARFARRMNRTAKAMGMTRTTFKNAHGLTESGHLSTARDMTILGRHVFYDYPEYYNLF 193

Query: 213 S-------IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           S       +RK  + NR       LLN     DGIKTGYTR +GFN+V S     + I+A
Sbjct: 194 SRITADAGVRKVYHTNR------ALLNSYRGADGIKTGYTRAAGFNLVASAERGGERIIA 247

Query: 266 VVMGMPTSQERDQKALELI 284
            V G  ++  R+ K  EL+
Sbjct: 248 TVFGGNSTASRNAKVAELL 266


>gi|110635386|ref|YP_675594.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium
           sp. BNC1]
 gi|110286370|gb|ABG64429.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Chelativorans
           sp. BNC1]
          Length = 382

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 153/264 (57%), Gaps = 7/264 (2%)

Query: 33  KILFLSIIMISMASELHAKPKYSS--IVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYII 89
           +++ L++   SM   LH  P  +   +++DV   ++   +    R YPASLTK+MT Y++
Sbjct: 22  QVILLAVFCYSM---LHL-PALAGPYVLVDVGTGRVLAQENAFQRWYPASLTKLMTAYVV 77

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           F  L+S +L +N+ + +S+ AA + PSK+     +  T +  +  L+  SAND++TA  E
Sbjct: 78  FRELESGRLQINSPVRISQNAAKEPPSKMGYSVGSVLTLDNALKILMVLSANDIATALAE 137

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            ++GSE+ F   M+ +A+++GM ++ + NA GL   +Q TTARD AIL   LR  FPQY 
Sbjct: 138 SVAGSEEAFVARMNAEAQRLGMTDSHFINAHGLPGPSQFTTARDLAILARALRAQFPQYA 197

Query: 210 KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            YFSI   R    +  N N L+ +    DG+KTGY  +SGFN+V +    +  + AVV+G
Sbjct: 198 SYFSIEGIRNGKSVKENTNFLIGRFDGADGMKTGYICSSGFNLVATATRGERTLAAVVLG 257

Query: 270 MPTSQERDQKALELITSFLEKKTL 293
             +  +R + A +L+T   E + L
Sbjct: 258 AQSQVQRAEIAADLLTRGFETQGL 281


>gi|170748801|ref|YP_001755061.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655323|gb|ACB24378.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 509

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 138/229 (60%), Gaps = 3/229 (1%)

Query: 57  IVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +V DV+  ++  + Q   +P YPAS+TK+MT Y+  + ++  K+ L++ I +S  AA + 
Sbjct: 38  LVADVDSGKVI-YAQAPTDPWYPASITKLMTTYVALDLVRQGKVSLDSMITISAAAAAEP 96

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           PSK+  K  T  T +  +  ++ +SANDV+ A GE + GS + FA LM+  A++IGM ++
Sbjct: 97  PSKMGFKPGTQLTLDNALKIIMVKSANDVAYAIGESLGGSVENFAALMNETAQRIGMHDS 156

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            + N +GL D  Q T+ARD A+L   L ++FP  +  FSI   ++   ++ NHN LL + 
Sbjct: 157 RWYNPNGLPDPRQWTSARDMAVLARALIRDFPDSHDLFSISAIQFGRAVMANHNGLLGRY 216

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
              DG+KTG+  + GFN+V +       IV +VMG P+ +ERD K  +L
Sbjct: 217 PGTDGMKTGFICSGGFNVVATATRNGRRIVTIVMGQPSPRERDVKTADL 265


>gi|126725140|ref|ZP_01740983.1| D-alanyl-D-alanine carboxypeptidase family protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126706304|gb|EBA05394.1| D-alanyl-D-alanine carboxypeptidase family protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 452

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/233 (40%), Positives = 137/233 (58%), Gaps = 2/233 (0%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           Y+++VID    ++   +  + R +PASLTKMMTLY+ FE ++  ++ L+T++ +SK AA 
Sbjct: 17  YAAMVIDARSGEVLHSRNADSRLHPASLTKMMTLYVTFEAIRKGEISLDTRVRISKKAAA 76

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           + PSKL L+          I A   +SAND +TA GE +SGSE  FA  M+  AK +GM 
Sbjct: 77  EPPSKLGLQAGQRIQLRYLIRAASVKSANDAATALGEAVSGSEAAFARRMNRTAKALGMS 136

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN-KLL 231
            T +KNA GL +   ++TARD   LG  L  ++PQYY  FS R      + + N N + L
Sbjct: 137 RTTFKNAHGLTESGHLSTARDMTTLGRRLFFDYPQYYNLFSRRTTDAGVKKVNNTNTRFL 196

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N     DGIKTGYT  +GFN+V S    ++ I+A V G  ++  R+ K  EL+
Sbjct: 197 NSYRGSDGIKTGYTNAAGFNLVASAVRGNERIIATVFGGRSTANRNAKVAELL 249


>gi|99082376|ref|YP_614530.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruegeria sp. TM1040]
 gi|99038656|gb|ABF65268.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruegeria sp. TM1040]
          Length = 496

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/230 (40%), Positives = 136/230 (59%), Gaps = 2/230 (0%)

Query: 57  IVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V+D    ++   +  + R +PASLTKMMTLYI FE +++ ++ L+TQI VS+ A  + P
Sbjct: 1   MVMDARTGEVLHSRNADTRLHPASLTKMMTLYIAFEAVRNGEITLDTQITVSRNAEAEPP 60

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S+L L+          I A   +SAND +TA GE ISGSE  FA  M+  AK +GM  T 
Sbjct: 61  SELGLRRGQKIALRYLIRAAAVKSANDAATAIGEAISGSEAAFARRMNRTAKALGMTRTT 120

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN-KLLNKM 234
           +KNA GL     ++TARD  ILG  +  ++P+YY  FS        +++ N N + L   
Sbjct: 121 FKNAHGLTANGHMSTARDMTILGRHMLYDYPEYYNLFSRTSTNAGTKVVYNTNRRFLAAY 180

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
              DGIKTGYTR +GFN+V+S +  D+ I+A V G  ++  R+ K  EL+
Sbjct: 181 RGADGIKTGYTRAAGFNLVSSAKRGDERIIATVFGGKSTAARNAKIAELL 230


>gi|83952372|ref|ZP_00961103.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius
           nubinhibens ISM]
 gi|83836045|gb|EAP75343.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius
           nubinhibens ISM]
          Length = 491

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/230 (40%), Positives = 138/230 (60%), Gaps = 2/230 (0%)

Query: 57  IVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +VID    ++   +  + R +PASLTKMMTLY++FE +++ ++ L+  I +S+ AA++ P
Sbjct: 17  MVIDARSGEVLHSRNADSRLHPASLTKMMTLYVVFEAVENGEISLDDTITISRHAASEPP 76

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           SKL L+          I A   +SAND +TA GE I GSE +FA  M+  AK +GM  T 
Sbjct: 77  SKLGLRAGQKIKLRYLIRAAAVKSANDAATALGEAIEGSEARFARRMTRTAKALGMTRTT 136

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN-KLLNKM 234
           +KNA GL +   ++TARD   LG  L  +FP+YY  FS  +     R ++N N +LL+  
Sbjct: 137 FKNAHGLTEDGHLSTARDMTTLGRHLFYDFPEYYNLFSRVETDAGVRSVSNTNRRLLSAY 196

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
              DGIKTGYTR +GFN+V S    ++ I+A V G  +S  R+ +  EL+
Sbjct: 197 KGADGIKTGYTRAAGFNLVASAERGNERIIATVFGGRSSHSRNAEVAELL 246


>gi|260427958|ref|ZP_05781937.1| serine-type D-Ala-D-Ala carboxypeptidase [Citreicella sp. SE45]
 gi|260422450|gb|EEX15701.1| serine-type D-Ala-D-Ala carboxypeptidase [Citreicella sp. SE45]
          Length = 519

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 95/253 (37%), Positives = 147/253 (58%), Gaps = 4/253 (1%)

Query: 35  LFLSIIMIS-MASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEY 92
             L+I+M++ M     A P ++++V+D    + +     D P +PASLTKMMTLYI FE 
Sbjct: 16  FILAIVMLAAMPLSAIAAP-FAAMVMDARSGEVLHSENADTPLHPASLTKMMTLYIAFEA 74

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           ++  ++ +++ + VS+ AA++ PSKL L+E         + A   +SAND +TA GE I+
Sbjct: 75  VEHGEITMDSVVTVSRNAASEPPSKLGLREGQKIKLRYLVRAAAVKSANDAATAIGEAIA 134

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           GSE  FA  M+  AK +GM  + +KNA+GL +   ++TARD +ILG  +  ++PQYY  F
Sbjct: 135 GSEAAFARRMNRTAKALGMTRSTFKNANGLTESGHMSTARDMSILGRHMVYDYPQYYNLF 194

Query: 213 SIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           S        R + N N + L      DGIKTGYTR +GFN+V S     + ++  V G  
Sbjct: 195 SRISTSAGVREVANTNRRFLGSYKGADGIKTGYTRAAGFNLVASAERGQERVITTVFGGA 254

Query: 272 TSQERDQKALELI 284
           ++  R+ K  +L+
Sbjct: 255 STAARNAKVAQLM 267


>gi|254460841|ref|ZP_05074257.1| D-alanyl-D-alanine carboxypeptidase family protein [Rhodobacterales
           bacterium HTCC2083]
 gi|206677430|gb|EDZ41917.1| D-alanyl-D-alanine carboxypeptidase family protein
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 454

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 92/247 (37%), Positives = 144/247 (58%), Gaps = 3/247 (1%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKL 98
           +++++   + A P Y++ V+D    ++   +  + R +PASLTKMMTLY+ F+ +++ ++
Sbjct: 1   MVVALPLSVSAAP-YAAFVMDARSGEVLHARNADTRLHPASLTKMMTLYVAFQAIENGEI 59

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            L+T + +S  AA + PSKL L+          I A   +SAND +TA GE + GSE  F
Sbjct: 60  TLDTTVKISANAAAEQPSKLGLRSGQRIKFRYLIRAAAVKSANDAATAIGEILEGSEAAF 119

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           A  M+  AK +GM  T +KNA GL +K  ++TARD + LG  L  ++P YY  FS +   
Sbjct: 120 ARRMTRTAKSLGMSKTTFKNAHGLTEKGHLSTARDMSTLGRHLLYDYPDYYNLFSRKSTD 179

Query: 219 YRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
              + + N N +LL+     DGIKTGYTR +GFN+V S     + I+A V G  ++  R+
Sbjct: 180 AGVKTVPNTNRRLLSNYRGADGIKTGYTRAAGFNLVASAERGQERIIATVFGGRSTATRN 239

Query: 278 QKALELI 284
            +  EL+
Sbjct: 240 ARVAELL 246


>gi|144901274|emb|CAM78138.1| Predicted peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 425

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 86/238 (36%), Positives = 134/238 (56%), Gaps = 9/238 (3%)

Query: 56  SIVIDVNKNQMTGFKQDE---PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           SIV+D     +   +QD+   PR+PASLTKMMTLY+ F+ L   K  LN  + VS+ AA 
Sbjct: 50  SIVVDATSGAV--LEQDQAGQPRHPASLTKMMTLYVAFQALSEGKTSLNATLTVSERAAG 107

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           Q  S L LK          + +L+ RSAND + A  E ++G+E  FA  M+ +A+++GM 
Sbjct: 108 QGGSVLGLKTGKTIALADALKSLVVRSANDAAVAIAEHVAGTEDSFAQRMTEQARRLGMT 167

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
            T ++NA+GL     +TTARD A+L + L+++FPQ++  F+    R+ +  +   N  + 
Sbjct: 168 ATSFRNATGLTAPGHLTTARDMAVLAMALKRDFPQHWPLFATTSMRWGSSQLPTVNGFVT 227

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                +G+KTG+T  +G+N+  +        +AV+MG    ++R    L L TS L K
Sbjct: 228 SYPGAEGLKTGFTCPAGYNLAAAASRNGRSAIAVIMGAAAKEQR----LALTTSLLNK 281


>gi|255262711|ref|ZP_05342053.1| D-alanyl-D-alanine carboxypeptidase family protein [Thalassiobium
           sp. R2A62]
 gi|255105046|gb|EET47720.1| D-alanyl-D-alanine carboxypeptidase family protein [Thalassiobium
           sp. R2A62]
          Length = 465

 Score =  169 bits (428), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 96/247 (38%), Positives = 141/247 (57%), Gaps = 3/247 (1%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKL 98
           +++S+   + A P Y+++VID    ++   +  + R +PASLTKMMTLYI F+ ++  +L
Sbjct: 1   MILSIPVRVAAAP-YAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYIAFQAVERGEL 59

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            L+T I + + AA + PSKL L+          I     +SAND +TA G  ISGSE  F
Sbjct: 60  SLDTMITIPRVAANEPPSKLGLRAGQKIRLRYLIRGAAVKSANDAATAIGVAISGSEAAF 119

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           A  M+  A+ +GM  T +KNA GL +   ++TARD   LG  +  ++PQYY  FS R   
Sbjct: 120 ARRMTRTAEAMGMSRTTFKNAHGLTENGHMSTARDMTNLGRHMIYDYPQYYNLFSRRSAD 179

Query: 219 YRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
              R + N N +LL      DGIKTGYTR +GFN+V S     + ++A V G  +S  R+
Sbjct: 180 AGVREVANTNRRLLGNYRGADGIKTGYTRAAGFNLVASAERGQERVIATVFGGRSSATRN 239

Query: 278 QKALELI 284
            +  EL+
Sbjct: 240 DRVAELL 246


>gi|260432451|ref|ZP_05786422.1| D-alanyl-D-alanine carboxypeptidase family protein [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416279|gb|EEX09538.1| D-alanyl-D-alanine carboxypeptidase family protein [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 475

 Score =  169 bits (428), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 96/234 (41%), Positives = 140/234 (59%), Gaps = 4/234 (1%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           Y+++VID    ++   +  + R +PASLTKMMTLYI FE +++ ++ L+T + ++K AA 
Sbjct: 34  YAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYIAFEAVRNGEITLDTPVTITKAAAA 93

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           + PSKL L+          I A   +SAND +TA G  +SGSE  FA  M+  AK +GM 
Sbjct: 94  EPPSKLGLRAGQKIAFRYLIRAAAVKSANDAATAIGIALSGSEAAFARRMTRTAKAMGMS 153

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-RIITNHN-KL 230
            T +KNA GL +   ++TARD   LG  L  ++P+YY  FS R+  Y   + + N N +L
Sbjct: 154 RTTFKNAHGLTEPGHLSTARDMTTLGRHLLYDYPEYYNLFS-RQSTYAGIKTVPNTNRRL 212

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           L      DGIKTGYTR +GFN+V S +  ++ I+A V G  +S  R+ K  EL+
Sbjct: 213 LAAYKGADGIKTGYTRAAGFNLVASAKRGNERIIATVFGGKSSAWRNAKVAELL 266


>gi|254501213|ref|ZP_05113364.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii
           DFL-11]
 gi|222437284|gb|EEE43963.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii
           DFL-11]
          Length = 473

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 93/269 (34%), Positives = 153/269 (56%), Gaps = 6/269 (2%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSI----VIDVNKNQMTGFKQDEPR-YPASLTKMM 84
           L G+   L I+  ++   L A P  + I    ++D     +   K    + YPASLTKMM
Sbjct: 5   LFGRRSALPILAAALGFFLMAAPARAEIGTYILVDARNGAVVDQKNATRKWYPASLTKMM 64

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T Y+ F+ ++  ++ L++ +  SK +A + PSK+  K  T FT +  +  ++ +SANDVS
Sbjct: 65  TAYVTFKAIREGRVALDSAVVQSKNSAAEPPSKMGFKVGTKFTIDTALKIILIKSANDVS 124

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A GE +SGSE  F   M+ +A+++GM NT + N  GL D  Q+TTARD AIL + LRK+
Sbjct: 125 VALGEAVSGSENAFLAEMNAEARRLGMTNTRFTNPHGLPDNRQVTTARDMAILAMALRKD 184

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNK-LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           FP+  +++     R+  + + + N+  L ++   +G+KTGY  NSGFN+ +S+  +   +
Sbjct: 185 FPEAREFYKHPGIRFGKKTLRSANREFLLRVPGANGMKTGYICNSGFNVASSVTRRGRTL 244

Query: 264 VAVVMGMPTSQERDQKALELITSFLEKKT 292
           +A++MG  +  ER   A +L      K +
Sbjct: 245 IAIIMGASSGLERTAFARQLFDEGFRKGS 273


>gi|260574206|ref|ZP_05842211.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sp. SW2]
 gi|259023672|gb|EEW26963.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sp. SW2]
          Length = 548

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 99/259 (38%), Positives = 147/259 (56%), Gaps = 4/259 (1%)

Query: 29  QLMGKILFLSIIMI-SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTL 86
           Q +  +L  S +++ +  S   A P Y++IVID    +    K  + R +PASLTKM+TL
Sbjct: 7   QFVRNLLLTSFVLVCAFVSPAGAAP-YAAIVIDARTGETIYAKNADTRLHPASLTKMLTL 65

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           YI F  ++  ++ L+T + VSK AA++ PS+L L+          I A   +SAND +TA
Sbjct: 66  YITFGAIERGEISLDTMVTVSKHAASEPPSRLGLRAGQKIALRYLIRAAAIKSANDAATA 125

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
            GE + GSE KFA  M+  AK +GM+N+ ++NA+GL     ++TARD   LG  L  +FP
Sbjct: 126 IGEAVGGSEAKFAERMNRTAKALGMRNSTFRNANGLTTPGHMSTARDMTTLGRHLFYDFP 185

Query: 207 QYYKYFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           QYY  FS R        + N N + L+     DGIKTGYT  +GFN+  S +  +  I+A
Sbjct: 186 QYYNIFSRRSSDAGVAEVANTNRRFLDMYEGADGIKTGYTAPAGFNLTASAQRGNKRIIA 245

Query: 266 VVMGMPTSQERDQKALELI 284
            + G  ++  R+ K  EL+
Sbjct: 246 TIFGGTSTAMRNAKMAELL 264


>gi|114765840|ref|ZP_01444933.1| D-alanyl-D-alanine carboxypeptidase family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114541839|gb|EAU44876.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius sp.
           HTCC2601]
          Length = 486

 Score =  168 bits (426), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 90/233 (38%), Positives = 134/233 (57%), Gaps = 2/233 (0%)

Query: 54  YSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           Y+++V+D    + +     D P +PASLTKMMTLY+ FE ++  +L ++T + +S+ AA 
Sbjct: 8   YAAMVVDARSGEVLHSENADTPLHPASLTKMMTLYLAFEAVEHGELTMDTVVTISRNAAA 67

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           + PSKL L+          + A   +SAND +TA GE ISGSE  FA  M+  AK +GM 
Sbjct: 68  EPPSKLGLRSGQKIKLRYLVRAAAVKSANDAATAIGEAISGSEAAFARRMNRTAKAMGMS 127

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-IRKFRYRNRIITNHNKLL 231
            T +KNA+GL +   ++TARD  +LG  +  ++PQYY  FS I      + +   + + L
Sbjct: 128 RTTFKNANGLTETGHMSTARDMTLLGRHMIYDYPQYYNLFSRITTHAGMHEVYNTNRRFL 187

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                 DGIKTGYTR +GFN+V S     + +V  V G  ++  R+ K  EL+
Sbjct: 188 GAYKGADGIKTGYTRAAGFNLVASAERGSERVVTTVFGGRSTASRNAKVAELM 240


>gi|296447596|ref|ZP_06889517.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus
           trichosporium OB3b]
 gi|296254911|gb|EFH02017.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus
           trichosporium OB3b]
          Length = 448

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 83/232 (35%), Positives = 138/232 (59%), Gaps = 5/232 (2%)

Query: 56  SIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S+VIDV   Q+   +Q++P    YPASLTK+MT+Y+  + ++S +L  +T + VS  A +
Sbjct: 27  SVVIDVASGQI--LEQEQPTQSWYPASLTKLMTVYVALDAVRSGRLSYDTPLVVSPRATS 84

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
             PSK+     +  T    ++ L+ +SANDV+    E +SGS + FA  M+  + ++GM+
Sbjct: 85  MAPSKMGFPPGSEVTLRNALVMLMVKSANDVAVTIAEGVSGSVEAFADEMNRASARLGMR 144

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
            + + N +GL D  Q+T+ARD A+LG  L   FP+   +++I   ++ ++I   HN LL 
Sbjct: 145 ESYWVNPNGLPDDRQVTSARDLALLGRALLVEFPESAGFYNIGAMKFGSQIHPTHNGLLG 204

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +    DG+KTG+T  +G+N+V S  +    ++AVV+G P+   R  KA  L+
Sbjct: 205 RYPGADGMKTGFTCPAGYNLVASATHGGQKLIAVVLGAPSGAARTAKAASLL 256


>gi|149203254|ref|ZP_01880224.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius sp.
           TM1035]
 gi|149143087|gb|EDM31126.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius sp.
           TM1035]
          Length = 465

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 93/241 (38%), Positives = 139/241 (57%), Gaps = 18/241 (7%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           Y+++V+D    ++      + R +PASLTKMMTLY++FE +++ ++ L+ ++ +SK AA+
Sbjct: 14  YAALVMDARNGEVLYSNNADTRLHPASLTKMMTLYVVFEAIENGEIGLDDKVVISKHAAS 73

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           + PSKL ++  +       I A   +SAND +TA GE I GSE +FA  M+  A+ +GM 
Sbjct: 74  EPPSKLGVRAGSSIALRYLIRAAAVKSANDAATALGEAIEGSEAQFARRMNRTAEALGMT 133

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN------ 226
            T +KNA GL +   ++TARD  ILG  L  +FPQYY  FS        RI T+      
Sbjct: 134 RTTFKNAHGLTENGHLSTARDMTILGRHLFYDFPQYYNLFS--------RITTDAGVTSV 185

Query: 227 ---HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
              + +LL      DGIKTGYTR +GFN+  S     + I+A V G  ++  R+ K  EL
Sbjct: 186 SHTNRRLLEAYRGADGIKTGYTRAAGFNLTASAERNGERIIATVFGGQSTASRNAKVAEL 245

Query: 284 I 284
           +
Sbjct: 246 L 246


>gi|270160121|ref|ZP_06188777.1| D-alanyl-D-alanine carboxypeptidase DacC [Legionella longbeachae
           D-4968]
 gi|289165102|ref|YP_003455240.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Legionella longbeachae NSW150]
 gi|269988460|gb|EEZ94715.1| D-alanyl-D-alanine carboxypeptidase DacC [Legionella longbeachae
           D-4968]
 gi|288858275|emb|CBJ12143.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Legionella longbeachae NSW150]
          Length = 422

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 88/229 (38%), Positives = 138/229 (60%), Gaps = 1/229 (0%)

Query: 57  IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           I+IDVN  ++   K  E R P ASLTKMMTLY+I   L  +++HL   + VS+ A     
Sbjct: 76  ILIDVNSGKIIAEKNSEERLPPASLTKMMTLYVISNALHHEQIHLTDNVRVSREAWKIGG 135

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S++++KE      E  +  +I  S ND   A  E + G+E  F  LM+ +A+ +GM+N+ 
Sbjct: 136 SRMFIKEGQQVPVEDLLKGIIVDSGNDACVAMAEHLGGTENSFTDLMNQQAQNLGMKNSH 195

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           + +++GL D N  TTA+D AILG  L  +FPQYY+++  + F Y      N N+LL + +
Sbjct: 196 FTDSTGLPDPNLYTTAKDLAILGRALIIDFPQYYEWYKQKWFTYNGIRQPNRNRLLWRDN 255

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +DGIKTG+T ++GF +V+S +  +  ++AVV+G PT   R   + +L+
Sbjct: 256 QVDGIKTGHTNDAGFCLVSSAKRDNMRLLAVVLGEPTDSSRADDSEKLL 304


>gi|163733947|ref|ZP_02141389.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter
           litoralis Och 149]
 gi|161393058|gb|EDQ17385.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter
           litoralis Och 149]
          Length = 511

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/229 (39%), Positives = 137/229 (59%), Gaps = 2/229 (0%)

Query: 58  VIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           V+D    ++   +  + R +PASLTKMMTLYI F+ +++ ++ L+T++ +S+ AA++ PS
Sbjct: 62  VMDARTGEVLHSRNADTRLHPASLTKMMTLYIAFQAVENGEISLDTKVKISRFAASEPPS 121

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
           KL LK          I A   +SAND +TA GE + GSE  FA  M+  AK++GM  T +
Sbjct: 122 KLGLKSGQRIAFRYLIRAAAIKSANDAATAIGEALEGSEAAFARRMTRTAKELGMTRTTF 181

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN-KLLNKMH 235
           KNA GL +   ++TARD ++LG  +  ++P+YY  FS R      R + N N +LL    
Sbjct: 182 KNAHGLTESGHMSTARDMSLLGRHVLYDYPEYYNLFSRRSTHAGVRDVANTNRRLLAAYR 241

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
             DGIKTGYTR +GFN+V S     + I+A V G  ++  R+ +  EL+
Sbjct: 242 GADGIKTGYTRAAGFNLVASAERGQERIIATVFGGTSTIARNARVAELL 290


>gi|126463103|ref|YP_001044217.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126104767|gb|ABN77445.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 474

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/258 (37%), Positives = 144/258 (55%), Gaps = 3/258 (1%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLY 87
           Q + ++LF+ + M+  A    A P Y++IV+D    +       E R +PASLTKMMTLY
Sbjct: 7   QYVRQVLFVFVAMVMAAQSAVAAP-YAAIVMDARTGETLYETNSETRLHPASLTKMMTLY 65

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           I F+ +Q  ++ L++ + V+K AA + PSKL LK          I A   +SAND +TA 
Sbjct: 66  ITFQAIQRGEISLDSLVTVTKNAAAEPPSKLGLKSGQRIALRYLIRAAAVKSANDAATAI 125

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E + GSE  FA  M+  AK IGM  T +KN +GL  +  ++TA D  +LG  L  +FPQ
Sbjct: 126 CEAVGGSEAAFAERMNRTAKAIGMTKTTFKNCNGLTAEGHLSTAHDMNVLGRRLFFDFPQ 185

Query: 208 YYKYFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           YY  FS R+       + N N + L+     DGIKTGYT  +G+N+  S +  +  I+A 
Sbjct: 186 YYNIFSRRRADAGVTTVANTNTRFLDAYKGADGIKTGYTSPAGYNLTASAQRGNKRIIAT 245

Query: 267 VMGMPTSQERDQKALELI 284
           V G  ++  R+ K  +L+
Sbjct: 246 VFGGKSTAHRNAKMADLL 263


>gi|121602162|ref|YP_988381.1| D-alanyl-D-alanine carboxypeptidase family protein [Bartonella
           bacilliformis KC583]
 gi|120614339|gb|ABM44940.1| D-alanyl-D-alanine carboxypeptidase family protein [Bartonella
           bacilliformis KC583]
          Length = 362

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/259 (37%), Positives = 145/259 (55%), Gaps = 5/259 (1%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQ 94
           F   +++SM S L     +  I +D+   ++    Q  E  YPASLTK+M  YI+F  + 
Sbjct: 8   FFLFLVLSMMSRLALAHPF--ISVDLANGRILEHNQAFERWYPASLTKLMMAYIVFRAMS 65

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
           + ++  NT I +SK AA   P +   K     T +  +   + +SAND++ A  E I+GS
Sbjct: 66  TGEISPNTSITISKAAAQAPPHRSSYKTGYTITLDAALSITLVKSANDLAIAISEAIAGS 125

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           +K F   M+  A+++GM  T + NASGL D N  +TARD A+L + +R+ FPQY  YFSI
Sbjct: 126 QKAFVKQMNAHAQRLGMFGTHFANASGLPDLNNYSTARDIALLAVQIRREFPQYTHYFSI 185

Query: 215 RKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
               + +  +I  N NKL+ +   IDG+KTG+   SGFNIV S    +  I+AV++G   
Sbjct: 186 PAIDFGDNQKIQYNSNKLIGRFDGIDGMKTGFICASGFNIVASATRNNRTIIAVILGAEN 245

Query: 273 SQERDQKALELITSFLEKK 291
             ER+ KA EL+     KK
Sbjct: 246 IDEREAKAAELLHEGFTKK 264


>gi|77464261|ref|YP_353765.1| penicillin-binding protein [Rhodobacter sphaeroides 2.4.1]
 gi|77388679|gb|ABA79864.1| Probable penicillin-binding protein [Rhodobacter sphaeroides 2.4.1]
          Length = 501

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/258 (37%), Positives = 144/258 (55%), Gaps = 3/258 (1%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLY 87
           Q + ++LF+ + M+  A    A P Y++IV+D    +       E R +PASLTKMMTLY
Sbjct: 34  QYVRQVLFVFVAMVMAAQSAVAAP-YAAIVMDARTGETLYETNSETRLHPASLTKMMTLY 92

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           I F+ +Q  ++ L++ + V+K AA + PSKL LK          I A   +SAND +TA 
Sbjct: 93  ITFQAIQRGEISLDSLVTVTKNAAAEPPSKLGLKSGQRIALRYLIRAAAVKSANDAATAI 152

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E + GSE  FA  M+  AK IGM  T +KN +GL  +  ++TA D  +LG  L  +FPQ
Sbjct: 153 CEAVGGSEAAFAERMNRTAKAIGMTKTTFKNCNGLTAEGHLSTAHDMNVLGRRLFFDFPQ 212

Query: 208 YYKYFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           YY  FS R+       + N N + L+     DGIKTGYT  +G+N+  S +  +  I+A 
Sbjct: 213 YYNIFSRRRADAGVTTVANTNTRFLDAYKGADGIKTGYTSPAGYNLTASAQRGNKRIIAT 272

Query: 267 VMGMPTSQERDQKALELI 284
           V G  ++  R+ K  +L+
Sbjct: 273 VFGGKSTAHRNAKMADLL 290


>gi|110678603|ref|YP_681610.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter
           denitrificans OCh 114]
 gi|109454719|gb|ABG30924.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter
           denitrificans OCh 114]
          Length = 485

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/229 (39%), Positives = 137/229 (59%), Gaps = 2/229 (0%)

Query: 58  VIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           V+D    ++   +  + R +PASLTKMMTLYI F+ +++ ++ L+T++ +S+ AA + PS
Sbjct: 38  VMDARTGEVLHSRNADTRLHPASLTKMMTLYIAFQAVENGEISLDTKVKISRFAAAEPPS 97

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
           KL LK          I A   +SAND +TA GE + GSE  FA  M+  AK++GM  T +
Sbjct: 98  KLGLKSGQRIAFRYLIRAAAIKSANDAATAIGEALEGSEAAFARRMNRTAKELGMTRTTF 157

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN-KLLNKMH 235
           KNA GL +   ++TARD ++LG  +  ++P+YY  FS R      R + N N +LL    
Sbjct: 158 KNAHGLTESGHMSTARDMSLLGRHVLYDYPEYYNLFSRRSTHAGVRDVANTNRRLLAAYR 217

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
             DGIKTGYTR +GFN+V S     + I+A V G  ++  R+++  EL+
Sbjct: 218 GADGIKTGYTRAAGFNLVASAERGQERIIATVFGGTSTIARNKRVAELL 266


>gi|33594884|ref|NP_882527.1| putative penicillin-binding protein precursor [Bordetella
           parapertussis 12822]
 gi|33564960|emb|CAE39907.1| putative penicillin-binding protein precursor [Bordetella
           parapertussis]
          Length = 418

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 87/240 (36%), Positives = 143/240 (59%), Gaps = 2/240 (0%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           I +DVN  Q +     D    PASLTK+MT Y++F  LQ K+L L  Q+PVS+ A     
Sbjct: 77  ITVDVNSGQVLAASNADMKVEPASLTKIMTAYVVFNALQEKRLTLEQQVPVSEHAWRTGG 136

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S+++++ +   T ++    +I +S ND S A  E + GSE  FA LM+ +A+++GM+NT 
Sbjct: 137 SRMFIEPRKPVTVDELNQGMIVQSGNDASVALAEAVGGSESAFAALMNQEAQRLGMRNTH 196

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           + N++GL D   +TTARD A L + L  ++P YY Y+  + + Y      N N+LL    
Sbjct: 197 FMNSTGLPDPQHVTTARDLATLAVHLLSDYPDYYHYYKQKSYTYNKITQPNRNRLLWADP 256

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT-SFLEKKTLK 294
           ++DG+KTG+T ++G+ +V++    D  I+ V++G  +   R +++L+L+  SF    T+K
Sbjct: 257 SVDGMKTGHTDSAGYCLVSTAMRGDRRILTVLVGADSEATRAEESLKLLNWSFQNFDTVK 316


>gi|214090056|gb|ACJ63448.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum sp.
           11a]
          Length = 199

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 84/178 (47%), Positives = 123/178 (69%), Gaps = 6/178 (3%)

Query: 35  LFLSIIM-ISMAS----ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYI 88
           L L+++   S AS     + A  +Y++IVID N  + +     D  RYPASLTKMMTLY+
Sbjct: 20  LLLAVVTGCSTASTTIPAIAASDRYAAIVIDANTGKTLFASNADAQRYPASLTKMMTLYM 79

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           +FE +Q+ +++ +T+IPVS  AA + P+K+  +       E   LA+IT+SANDV+TA G
Sbjct: 80  LFEAMQAGRMNKDTRIPVSAYAAARPPTKIGFRSGQSIRAEDAALAMITKSANDVATAVG 139

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
           E+I GSE++FA +M+ KA+++GM+NT ++NASGL +  Q TTARD AIL I LR++FP
Sbjct: 140 EYIGGSEERFAQMMTAKARRLGMRNTTFRNASGLPNMAQHTTARDMAILSIALRQHFP 197


>gi|254496461|ref|ZP_05109338.1| D-alanyl-D-alanine carboxypeptidase [Legionella drancourtii LLAP12]
 gi|254354317|gb|EET12975.1| D-alanyl-D-alanine carboxypeptidase [Legionella drancourtii LLAP12]
          Length = 413

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 88/229 (38%), Positives = 136/229 (59%), Gaps = 1/229 (0%)

Query: 57  IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           I+IDVN  ++   K  E R P ASLTKMMTLY+I   L  +++HL   + VSK A     
Sbjct: 67  ILIDVNSGKVIAEKNSEERLPPASLTKMMTLYVISNALHHEQIHLTDSVRVSKDAWKIGG 126

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S++++KE      E  +  +I  S ND   A  E I G+E  F  +M+ +A+ +GMQN+ 
Sbjct: 127 SRMFIKEGQQVPVEDLLKGIIVDSGNDACVAMAEHIGGTENSFTDIMNQQAQNLGMQNSH 186

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           + +++GL D N  TTA+D AILG  L  +FPQYY ++  + F Y      N N+LL + +
Sbjct: 187 FTDSTGLPDPNLYTTAKDLAILGRALIVDFPQYYDWYKQKWFTYNGIRQPNRNRLLWRDN 246

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +DG+KTG+T  +GF +V+S + ++  ++AVV+G P    R   + +L+
Sbjct: 247 QVDGLKTGHTSEAGFCLVSSAKRENMRLLAVVLGEPNDSSRADDSEKLL 295


>gi|187476650|ref|YP_784673.1| penicillin-binding protein [Bordetella avium 197N]
 gi|115421236|emb|CAJ47741.1| penicillin-binding protein [Bordetella avium 197N]
          Length = 419

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 91/256 (35%), Positives = 147/256 (57%), Gaps = 7/256 (2%)

Query: 46  SELHAKPK-----YSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
            EL A P       + I IDVN  Q +     D+   PASLTK+MT Y++F  L  K+L 
Sbjct: 62  GELAAVPAPTIAARAWIAIDVNSGQVLAASNPDQKVEPASLTKVMTAYVVFNALDEKRLT 121

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           L+ Q+PVS+ A     S+++++ +   T ++ I  +I +S ND S A  E + GSE  FA
Sbjct: 122 LDQQVPVSQHAWRTGGSRMFIEPRKPVTVDELIQGMIVQSGNDASVALAEAVGGSETAFA 181

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            LM+ +A+++GM+ T + NA+GL D   ITT RD A L   L  + P+YY Y+  + F Y
Sbjct: 182 ALMNEQAERLGMKGTHFMNATGLPDPQHITTVRDLATLATHLVSDHPEYYHYYKQKGFTY 241

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
                 N N+LL    ++DG+KTG+T ++G+ ++++    D  ++ V++G  +   R ++
Sbjct: 242 NKITQPNRNRLLWADPSVDGMKTGHTDSAGYCLISTALRGDRRVLTVLVGADSEATRAEE 301

Query: 280 ALELIT-SFLEKKTLK 294
           +L+L+  SF    T+K
Sbjct: 302 SLKLLNWSFQNFDTVK 317


>gi|54297421|ref|YP_123790.1| hypothetical protein lpp1466 [Legionella pneumophila str. Paris]
 gi|53751206|emb|CAH12617.1| hypothetical protein lpp1466 [Legionella pneumophila str. Paris]
          Length = 430

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 139/229 (60%), Gaps = 1/229 (0%)

Query: 57  IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           I+IDVN  ++   K  E + P ASLTKMMTLY+I   L+S ++HLN  + VS+ A     
Sbjct: 84  ILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQIHLNDMVRVSRDAWQTGG 143

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S++++KE    + E  +  +I  S ND   A  E + GSE  F  +M+ +A+ +GM+N+ 
Sbjct: 144 SRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAFTDIMNQQAQNLGMKNSH 203

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           + +++GL D N  TTA+D AILG  L  +FP+YY ++  + F Y      N N+LL +  
Sbjct: 204 FTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFTYNGIRQPNRNRLLWRDS 263

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +DGIKTG+T ++G+ +V+S +  +  ++AVV+G P+   R   + +L+
Sbjct: 264 QVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSDSVRADDSEKLL 312


>gi|307610210|emb|CBW99765.1| hypothetical protein LPW_15321 [Legionella pneumophila 130b]
          Length = 430

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 139/229 (60%), Gaps = 1/229 (0%)

Query: 57  IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           I+IDVN  ++   K  E + P ASLTKMMTLY+I   L+S ++HLN  + VS+ A     
Sbjct: 84  ILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQIHLNDMVRVSRDAWQTGG 143

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S++++KE    + E  +  +I  S ND   A  E + GSE  F  +M+ +A+ +GM+N+ 
Sbjct: 144 SRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAFTDIMNQQAQNLGMKNSH 203

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           + +++GL D N  TTA+D AILG  L  +FP+YY ++  + F Y      N N+LL +  
Sbjct: 204 FTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFTYNGIRQPNRNRLLWRDS 263

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +DGIKTG+T ++G+ +V+S +  +  ++AVV+G P+   R   + +L+
Sbjct: 264 QVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSDSVRADDSEKLL 312


>gi|52841739|ref|YP_095538.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628850|gb|AAU27591.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 430

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 139/229 (60%), Gaps = 1/229 (0%)

Query: 57  IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           I+IDVN  ++   K  E + P ASLTKMMTLY+I   L+S ++HLN  + VS+ A     
Sbjct: 84  ILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQIHLNDMVRVSRDAWQTGG 143

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S++++KE    + E  +  +I  S ND   A  E + GSE  F  +M+ +A+ +GM+N+ 
Sbjct: 144 SRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAFTDIMNQQAQNLGMKNSH 203

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           + +++GL D N  TTA+D AILG  L  +FP+YY ++  + F Y      N N+LL +  
Sbjct: 204 FTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFTYNGIRQPNRNRLLWRDS 263

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +DGIKTG+T ++G+ +V+S +  +  ++AVV+G P+   R   + +L+
Sbjct: 264 QVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSDSVRADDSEKLL 312


>gi|218506880|ref|ZP_03504758.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli Brasil
           5]
          Length = 247

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 82/205 (40%), Positives = 130/205 (63%)

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + FE L+  K+  +T I +SK AA + P+KL +K     T  + +  +I +SAND + A 
Sbjct: 1   LTFEALKRGKIDWDTPIRMSKYAAARPPTKLGVKAGGTITVREAVYGMIVKSANDAAAAM 60

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E + GSE  FA +M+ KA+++GM  T++ NASGL + +Q+TTARD + LG+ L KN+P 
Sbjct: 61  AETLGGSESGFAWMMTAKARQLGMSRTVFVNASGLPNPSQVTTARDMSTLGVALMKNYPN 120

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            Y+ FS+  F +R + +  HN L+ +   +DGIKTGYT  SGFN+V+++R  +  +V VV
Sbjct: 121 EYRLFSMASFNFRGKTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVVGVV 180

Query: 268 MGMPTSQERDQKALELITSFLEKKT 292
           +G  T++ RD K   L+  +L + +
Sbjct: 181 LGGRTARSRDAKMAGLLDRYLGRAS 205


>gi|54294448|ref|YP_126863.1| hypothetical protein lpl1517 [Legionella pneumophila str. Lens]
 gi|53754280|emb|CAH15757.1| hypothetical protein lpl1517 [Legionella pneumophila str. Lens]
          Length = 430

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 139/229 (60%), Gaps = 1/229 (0%)

Query: 57  IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           I+IDVN  ++   K  E + P ASLTKMMTLY+I   L+S ++HLN  + VS+ A     
Sbjct: 84  ILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQIHLNDMVRVSRDAWQTGG 143

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S++++KE    + E  +  +I  S ND   A  E + GSE  F  +M+ +A+ +GM+N+ 
Sbjct: 144 SRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAFTDIMNQQAQNLGMKNSH 203

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           + +++GL D N  TTA+D AILG  L  +FP+YY ++  + F Y      N N+LL +  
Sbjct: 204 FTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFTYNGIRQPNRNRLLWRDS 263

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +DGIKTG+T ++G+ +V+S +  +  ++AVV+G P+   R   + +L+
Sbjct: 264 QVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSESVRADDSEKLL 312


>gi|296107091|ref|YP_003618791.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila 2300/99
           Alcoy]
 gi|295648992|gb|ADG24839.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila 2300/99
           Alcoy]
          Length = 407

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 139/229 (60%), Gaps = 1/229 (0%)

Query: 57  IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           I+IDVN  ++   K  E + P ASLTKMMTLY+I   L+S ++HLN  + VS+ A     
Sbjct: 61  ILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQIHLNDLVRVSRDAWQTGG 120

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S++++KE    + E  +  +I  S ND   A  E + GSE  F  +M+ +A+ +GM+N+ 
Sbjct: 121 SRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAFTDIMNQQAQNLGMKNSH 180

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           + +++GL D N  TTA+D AILG  L  +FP+YY ++  + F Y      N N+LL +  
Sbjct: 181 FTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFTYNGIRQPNRNRLLWRDS 240

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +DGIKTG+T ++G+ +V+S +  +  ++AVV+G P+   R   + +L+
Sbjct: 241 QVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSDSVRADDSEKLL 289


>gi|332559150|ref|ZP_08413472.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
           WS8N]
 gi|332276862|gb|EGJ22177.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
           WS8N]
          Length = 463

 Score =  166 bits (419), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 97/253 (38%), Positives = 141/253 (55%), Gaps = 3/253 (1%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEY 92
           +LF+ + M+  A    A P Y++IV+D    +       E R +PASLTKMMTLYI F+ 
Sbjct: 1   MLFVFVAMVMAAQSAVAAP-YAAIVMDARTGETLYETNSETRLHPASLTKMMTLYITFQA 59

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           +Q  ++ L++ + V+K AA + PSKL LK          I A   +SAND +TA  E + 
Sbjct: 60  IQRGEISLDSLVTVTKNAAAEPPSKLGLKSGQRIALRYLIRAAAVKSANDAATAICEAVG 119

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           GSE  FA  M+  AK IGM  T +KN +GL  +  ++TA D  +LG  L  +FPQYY  F
Sbjct: 120 GSEAAFAERMNRTAKAIGMTKTTFKNCNGLTAEGHLSTAHDMNVLGRRLFFDFPQYYNIF 179

Query: 213 SIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           S R+       + N N + L+     DGIKTGYT  +G+N+  S +  +  I+A V G  
Sbjct: 180 SRRRADAGVTTVANTNTRFLDAYKGADGIKTGYTSPAGYNLTASAQRGNKRIIATVFGGK 239

Query: 272 TSQERDQKALELI 284
           ++  R+ K  +L+
Sbjct: 240 STAHRNAKMADLL 252


>gi|148359042|ref|YP_001250249.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila str.
           Corby]
 gi|148280815|gb|ABQ54903.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila str.
           Corby]
          Length = 430

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 139/229 (60%), Gaps = 1/229 (0%)

Query: 57  IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           I+IDVN  ++   K  E + P ASLTKMMTLY+I   L+S ++HLN  + VS+ A     
Sbjct: 84  ILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQIHLNDLVRVSRDAWQTGG 143

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S++++KE    + E  +  +I  S ND   A  E + GSE  F  +M+ +A+ +GM+N+ 
Sbjct: 144 SRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAFTDIMNQQAQNLGMKNSH 203

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           + +++GL D N  TTA+D AILG  L  +FP+YY ++  + F Y      N N+LL +  
Sbjct: 204 FTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFTYNGIRQPNRNRLLWRDS 263

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +DGIKTG+T ++G+ +V+S +  +  ++AVV+G P+   R   + +L+
Sbjct: 264 QVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSDSVRADDSEKLL 312


>gi|227823262|ref|YP_002827234.1| putative D-alanyl-D-alanine carboxypeptidase [Sinorhizobium fredii
           NGR234]
 gi|227342263|gb|ACP26481.1| putative D-alanyl-D-alanine carboxypeptidase [Sinorhizobium fredii
           NGR234]
          Length = 372

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 87/223 (39%), Positives = 136/223 (60%), Gaps = 5/223 (2%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPASLTK+MT Y  F+ +++ +L L + + ++K AA++ PSK++ K     T +  +  +
Sbjct: 57  YPASLTKLMTAYTTFQAIKAGQLTLESPVVMTKNAASEPPSKMFYKPGQAMTLDSALKMM 116

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + +SANDV+ A  E +SGSE+ F   M+ +A++IGM ++ + NA+GL  + Q TTARD A
Sbjct: 117 LVKSANDVAVAIAETVSGSEQAFIDRMNAEARRIGMTSSHFINANGLPGQGQYTTARDLA 176

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           +L I L++ FPQY  YFS+  F    +   N+N L+ +    DG+KTG+   SGFN V+S
Sbjct: 177 VLAITLKREFPQYASYFSLEGFTTGKKDYANYNMLIGRFEGADGMKTGFICASGFNQVSS 236

Query: 256 LRYKDDPIVAVVMGMPTSQER-DQKA----LELITSFLEKKTL 293
                  +V+VV+G  +   R D+ A    + L TS  EK +L
Sbjct: 237 ATRAGRSVVSVVLGEDSLGARADESARLLQMALTTSAAEKPSL 279


>gi|90425548|ref|YP_533918.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisB18]
 gi|90107562|gb|ABD89599.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisB18]
          Length = 476

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 93/273 (34%), Positives = 150/273 (54%), Gaps = 15/273 (5%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           P YPAS+TK+MT Y+  + ++  ++ L+T + VS TAA+Q+PSK+  +  T  T +  + 
Sbjct: 47  PWYPASVTKLMTAYVTLKAIKEGRITLDTLLTVSPTAASQSPSKMGFRAGTQLTVDNALK 106

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            ++ +SAND++    E + GS   F+ +M++ A+++GM  T Y N +GL    QIT+ARD
Sbjct: 107 MMLVKSANDMAVVLAEGVGGSIDGFSAMMNDNAQRLGMTQTSYVNPNGLPADGQITSARD 166

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
             IL   + ++ P+Y  +  I   R+  R+  N N+L+ +    DG KTG+   SGFN+V
Sbjct: 167 LGILARAIIRDLPEYEYFVHIPSIRFGKRVTQNFNRLIGRYPGADGFKTGFICASGFNLV 226

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRK------DNL--- 304
            S       ++AVV+G P+SQ R  KA +L    LE+    +Q T  +      DNL   
Sbjct: 227 ASATRDGKRLIAVVLGAPSSQARALKAAQL----LERGFSANQLTWLRPALGTVDNLAPI 282

Query: 305 --SSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
             +  +L+  +   K KR  S   + D  A +T
Sbjct: 283 DAAPPNLRDEMCGPKRKRPASDESEEDNIASAT 315


>gi|83941609|ref|ZP_00954071.1| D-alanyl-D-alanine carboxypeptidase family protein [Sulfitobacter
           sp. EE-36]
 gi|83847429|gb|EAP85304.1| D-alanyl-D-alanine carboxypeptidase family protein [Sulfitobacter
           sp. EE-36]
          Length = 502

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 99/264 (37%), Positives = 147/264 (55%), Gaps = 21/264 (7%)

Query: 30  LMGKILFLSIIMIS-MASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLY 87
           ++  I  L I+ +S MA+       Y++ VID    ++   +  + R +PASLTKMMTLY
Sbjct: 15  ILAAIWILLILPLSAMAA------PYAAYVIDARTGEVLHSRNADTRLHPASLTKMMTLY 68

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           I FE ++  ++ L++++ ++  AA++ PSKL LK          I A   +SAND +TA 
Sbjct: 69  IAFEAIKRGEISLDSKVKITSHAASEPPSKLGLKSGQTIALRYLIRAAAVKSANDAATAI 128

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
           GE I GSE KFA  M+  AK +GM NT +KNA GL +   ++TA D  I+G  L  + P+
Sbjct: 129 GEAIEGSEAKFARRMNRTAKALGMTNTTFKNAHGLTESGHMSTAHDMTIMGRHLLYDHPE 188

Query: 208 YYKYFS-------IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           YY  FS       +RK  + NR      + L+     DGIKTGYTR +GFN+  S    +
Sbjct: 189 YYNLFSRITADAGVRKVSHTNR------RFLSSYKGADGIKTGYTRAAGFNLTASAERGN 242

Query: 261 DPIVAVVMGMPTSQERDQKALELI 284
           + I+  V G  ++  R+ K  EL+
Sbjct: 243 ERIIVTVFGGTSTSARNAKVAELM 266


>gi|294676715|ref|YP_003577330.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacter capsulatus SB
           1003]
 gi|294475535|gb|ADE84923.1| D-alanyl-D-alanine carboxypeptidase-1 [Rhodobacter capsulatus SB
           1003]
          Length = 538

 Score =  166 bits (419), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 98/265 (36%), Positives = 144/265 (54%), Gaps = 3/265 (1%)

Query: 32  GKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIF 90
           G+   L+I +  +   L A P +++ V+D    ++   K  + R +PASLTKMMTLYI F
Sbjct: 8   GRSGLLAIFLAVLPVALSAAP-FAAYVMDARTGEVLYEKNADTRLHPASLTKMMTLYIAF 66

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           + ++S +  L+T + VS  AA Q PS+L L+          I     +SAND + A G+F
Sbjct: 67  QAIESGEASLDTMVTVSANAAGQAPSRLGLRTGQKIALRYLIRGAAIKSANDAAAAIGDF 126

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           + G E  FA  M+  AK +GM+NT +KNA+GL     ++TA D +ILG  L  +FPQYY 
Sbjct: 127 LEGDEAHFAARMNRTAKALGMKNTTFKNANGLTKAGHLSTAHDMSILGRHLLYDFPQYYN 186

Query: 211 YFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            FS R        + N N + L+     DGIKTGYT  +GFN+  S +  +  I+A + G
Sbjct: 187 LFSRRTADAGIAHVANTNRRFLDAYDGADGIKTGYTVPAGFNLTASAQRGNKRIIATIFG 246

Query: 270 MPTSQERDQKALELITSFLEKKTLK 294
             +   R+ K  EL+    E+   K
Sbjct: 247 GTSPAARNSKMAELMDLGFERAPGK 271


>gi|221640145|ref|YP_002526407.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
           KD131]
 gi|221160926|gb|ACM01906.1| Serine-type D-Ala-D-Ala carboxypeptidase precursor [Rhodobacter
           sphaeroides KD131]
          Length = 463

 Score =  166 bits (419), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 97/253 (38%), Positives = 141/253 (55%), Gaps = 3/253 (1%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEY 92
           +LF+ + M+  A    A P Y++IV+D    +       E R +PASLTKMMTLYI F+ 
Sbjct: 1   MLFVFVAMVMAAHSAVAAP-YAAIVMDARTGETLYETNSETRLHPASLTKMMTLYITFQA 59

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           +Q  ++ L++ + V+K AA + PSKL LK          I A   +SAND +TA  E + 
Sbjct: 60  IQRGEISLDSLVTVTKNAAAEPPSKLGLKSGQRIALRYLIRAAAVKSANDAATAICEAVG 119

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           GSE  FA  M+  AK IGM  T +KN +GL  +  ++TA D  +LG  L  +FPQYY  F
Sbjct: 120 GSEAAFAERMNRTAKAIGMTKTTFKNCNGLTAEGHLSTAHDMNVLGRRLFFDFPQYYNIF 179

Query: 213 SIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           S R+       + N N + L+     DGIKTGYT  +G+N+  S +  +  I+A V G  
Sbjct: 180 SRRRADAGVTTVANTNTRFLDAYKGADGIKTGYTSPAGYNLTASAQRGNKRIIATVFGGK 239

Query: 272 TSQERDQKALELI 284
           ++  R+ K  +L+
Sbjct: 240 STAHRNAKMADLL 252


>gi|85707408|ref|ZP_01038489.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius sp.
           217]
 gi|85668064|gb|EAQ22944.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius sp.
           217]
          Length = 480

 Score =  165 bits (418), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 89/218 (40%), Positives = 129/218 (59%), Gaps = 17/218 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           +PASLTKMMTLY++FE +++ ++ L+ ++ +SK AA++ PSKL ++  +       I A 
Sbjct: 57  HPASLTKMMTLYVVFEAIENGEIGLDDKVLISKHAASEPPSKLGVRAGSSIALRYLIRAA 116

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
             +SAND +TA GE I GSE +FA  M+  A+ +GM  T +KNA GL +   ++TARD +
Sbjct: 117 AVKSANDAATALGEAIEGSEAQFARRMNRTAESLGMSRTTFKNAHGLTENGHLSTARDMS 176

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITN---------HNKLLNKMHNIDGIKTGYTR 246
           ILG  L  +FPQYY  FS        RI T+         + +LL      DGIKTGYTR
Sbjct: 177 ILGRHLFYDFPQYYNLFS--------RITTDAGVTSVSHTNRRLLEAYRGADGIKTGYTR 228

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +GFN+  S     + I+A V G  ++  R+ K  EL+
Sbjct: 229 AAGFNLTASAERNGERIIATVFGGQSTASRNAKVAELL 266


>gi|83855085|ref|ZP_00948615.1| D-alanyl-D-alanine carboxypeptidase family protein [Sulfitobacter
           sp. NAS-14.1]
 gi|83842928|gb|EAP82095.1| D-alanyl-D-alanine carboxypeptidase family protein [Sulfitobacter
           sp. NAS-14.1]
          Length = 473

 Score =  165 bits (418), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 93/239 (38%), Positives = 136/239 (56%), Gaps = 14/239 (5%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           Y++ VID    ++   +  + R +PASLTKMMTLYI FE ++  ++ L++++ ++  AA+
Sbjct: 5   YAAYVIDARTGEVLHSRNADTRLHPASLTKMMTLYIAFEAIKRGEISLDSKVKITSHAAS 64

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           + PSKL LK          I A   +SAND +TA GE I GSE KFA  M+  AK +GM 
Sbjct: 65  EPPSKLGLKSGQTIALRYLIRAAAVKSANDAATAIGEAIEGSEAKFARRMNRTAKALGMT 124

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-------IRKFRYRNRIIT 225
           NT +KNA GL +   ++TA D  I+G  L  + P+YY  FS       +RK  + NR   
Sbjct: 125 NTTFKNAHGLTESGHMSTAHDMTIMGRHLLYDHPEYYNLFSRITADAGVRKVSHTNR--- 181

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
              + L+     DGIKTGYTR +GFN+  S    ++ I+  V G  ++  R+ K  EL+
Sbjct: 182 ---RFLSSYKGADGIKTGYTRAAGFNLTASAERGNERIIVTVFGGTSTSARNAKVAELM 237


>gi|126733463|ref|ZP_01749210.1| Probable penicillin-binding protein [Roseobacter sp. CCS2]
 gi|126716329|gb|EBA13193.1| Probable penicillin-binding protein [Roseobacter sp. CCS2]
          Length = 464

 Score =  165 bits (418), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 95/267 (35%), Positives = 150/267 (56%), Gaps = 16/267 (5%)

Query: 54  YSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           Y+++V+D    ++   +  D   +PASLTKMMTLY+ F+ ++  ++ L+T + +S+ AA+
Sbjct: 8   YAAMVMDARTGEVLHSRNADTQLHPASLTKMMTLYVAFQAIERGEITLDTPVRISRLAAS 67

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           + PSKL L+          + A   +SAND +TA GE ISGSE  FA  M+  A+ +GM+
Sbjct: 68  EPPSKLGLRSGQTIRLRFLLRAAAVKSANDAATAIGEAISGSEDAFATRMNRTARAMGMR 127

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR-------KFRYRNRIIT 225
           NT ++NA GL     ++TARD ++LG  +  +FPQYY  FS R       + R+ NR   
Sbjct: 128 NTNFRNAHGLTQSGHLSTARDMSVLGRHVIYDFPQYYNLFSRRSADAGVARVRHTNR--- 184

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
              + L+     DGIKTGYTR +GFN+V S +   + ++A V G  ++  R+ +  EL+ 
Sbjct: 185 ---RWLDSYAGGDGIKTGYTRAAGFNLVASAQRGQERVIATVFGGSSTSARNARITELMD 241

Query: 286 SFLEKKTLKHQQTHRKDNLSSTSLKKS 312
               +     + T R+ N  +  L  S
Sbjct: 242 MGFNRA--PSRATIRRPNPPAAMLTSS 266


>gi|33591361|ref|NP_879005.1| putative penicillin-binding protein precursor [Bordetella pertussis
           Tohama I]
 gi|33599159|ref|NP_886719.1| putative penicillin-binding protein precursor [Bordetella
           bronchiseptica RB50]
 gi|33571003|emb|CAE40482.1| putative penicillin-binding protein precursor [Bordetella pertussis
           Tohama I]
 gi|33575205|emb|CAE30668.1| putative penicillin-binding protein precursor [Bordetella
           bronchiseptica RB50]
 gi|332380762|gb|AEE65609.1| putative penicillin-binding protein precursor [Bordetella pertussis
           CS]
          Length = 418

 Score =  165 bits (417), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 87/240 (36%), Positives = 142/240 (59%), Gaps = 2/240 (0%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           I +DVN  Q +     D    PASLTK+MT Y++F  LQ K+L L  Q+PVS+ A     
Sbjct: 77  ITVDVNSGQVLAASNADMKVEPASLTKIMTAYVVFNALQEKRLTLEQQVPVSEHAWRTGG 136

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S+++++ +   T ++    +I +S ND S A  E + GSE  FA LM+ +A+++GM+NT 
Sbjct: 137 SRMFIEPRKPVTVDELNQGMIVQSGNDASVALAEAVGGSESAFAALMNQEAQRLGMRNTH 196

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           + N++GL D   +TTARD A L   L  ++P YY Y+  + + Y      N N+LL    
Sbjct: 197 FMNSTGLPDPQHVTTARDLATLAAHLISDYPDYYHYYKQKSYTYNKITQPNRNRLLWADP 256

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT-SFLEKKTLK 294
           ++DG+KTG+T ++G+ +V++    D  I+ V++G  +   R +++L+L+  SF    T+K
Sbjct: 257 SVDGMKTGHTDSAGYCLVSTAMRGDRRILTVLVGADSEATRAEESLKLLNWSFQNFDTVK 316


>gi|310815390|ref|YP_003963354.1| Probable penicillin-binding protein [Ketogulonicigenium vulgare
           Y25]
 gi|308754125|gb|ADO42054.1| Probable penicillin-binding protein [Ketogulonicigenium vulgare
           Y25]
          Length = 314

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/262 (38%), Positives = 148/262 (56%), Gaps = 7/262 (2%)

Query: 29  QLMGK----ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKM 83
           QL GK    +L   I+  +M S   A P Y+++V+D    Q+   +  + R +PASLTKM
Sbjct: 3   QLAGKARLGLLAFIILCAAMMSHAFAAP-YAALVMDARTGQVLDSENADTRLHPASLTKM 61

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MTLYI F+ ++  ++ LN+Q+ VS  AA Q PS+L L+       +  I A   +SAND 
Sbjct: 62  MTLYIAFQAIERGEVSLNSQVTVSANAAAQPPSRLGLRAGQRIELQYLIRAAAIKSANDA 121

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           +TA G  ISGSE+ FA  M+  A+ +GM NT + + +GL      +TARD  ILG  L  
Sbjct: 122 ATAIGVGISGSEEAFAARMNATARAMGMNNTHFISMNGLTTNGHYSTARDMTILGRHLIY 181

Query: 204 NFPQYYKYFSIRKFRYRNRII-TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           +FPQYY  FS R        + T +++LL+     DGIKTGYT+ +G+N+  S    +  
Sbjct: 182 DFPQYYNLFSRRSADAGIATVRTTNSRLLDNYQGADGIKTGYTQAAGYNLTASAERGNVR 241

Query: 263 IVAVVMGMPTSQERDQKALELI 284
           I+A V G  ++ +R  +   L+
Sbjct: 242 IIATVFGATSNADRHTRITRLM 263


>gi|90420271|ref|ZP_01228179.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335605|gb|EAS49355.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 455

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 83/234 (35%), Positives = 140/234 (59%), Gaps = 1/234 (0%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  +SIV+DV   ++   +   E RYPAS TK+MT Y+    L+  +L L++ + V++ +
Sbjct: 24  PPMASIVVDVATGKVLSQQHATERRYPASTTKLMTAYLALRALRESRLSLDSPVIVTRRS 83

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A + PSK+  K  +    +  +  ++ +SAND++ A GE + GS ++F  +M++ A ++G
Sbjct: 84  AAEAPSKMGFKPGSVIRLDFALRMMLVKSANDIAYAIGETVGGSMEEFVAMMNDAAAQLG 143

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           MQ+T + NA+GL  + Q ++A+D AILG+ +R+ FP +  YF          I+ N NKL
Sbjct: 144 MQDTRFINANGLPGEGQHSSAKDLAILGVAIRREFPAFADYFGTEAISNGTAILKNGNKL 203

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           L +    DG+KTGY   SGFN+V+S       +VAVV+G   +  R++ + E++
Sbjct: 204 LGRFDGADGMKTGYICASGFNLVSSATRNGRTLVAVVIGANGTIPRERLSAEIL 257


>gi|163744788|ref|ZP_02152148.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanibulbus
           indolifex HEL-45]
 gi|161381606|gb|EDQ06015.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanibulbus
           indolifex HEL-45]
          Length = 491

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/262 (37%), Positives = 144/262 (54%), Gaps = 16/262 (6%)

Query: 32  GKILFLSI-IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYII 89
           G  LF +  +++ +     A P Y++ VID    +    +  + R +PASLTKMMTLYI 
Sbjct: 12  GLFLFAAFWVLVILPLSAMAAP-YAAYVIDARTGKEIHAENADTRLHPASLTKMMTLYIA 70

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           F+ ++  +L L+TQ+ +S+ AA++ PSKL ++          I A   +SAND +TA GE
Sbjct: 71  FQAVERGELSLDTQVTISQNAASEPPSKLGMRPGQKIALRYLIRAAAVKSANDAATAIGE 130

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            I GSE  FA  M+  AK++GM  T +KN  GL +   ++TARD   +G  L  ++PQYY
Sbjct: 131 AIEGSEAAFARRMNRTAKQLGMTRTTFKNMHGLTENGHLSTARDMTAMGRHLLYDYPQYY 190

Query: 210 KYFS-------IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
             FS       +RK  + NR      + L      DGIKTGYTR +GFN+  S    ++ 
Sbjct: 191 NLFSRITADAGVRKVSHTNR------RFLGSYKGADGIKTGYTRAAGFNLTASAERGNER 244

Query: 263 IVAVVMGMPTSQERDQKALELI 284
           I+  V G  ++  R+ K  EL+
Sbjct: 245 IIVTVFGGNSTASRNAKVAELM 266


>gi|148244582|ref|YP_001219276.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326409|dbj|BAF61552.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 375

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/276 (34%), Positives = 156/276 (56%), Gaps = 14/276 (5%)

Query: 34  ILFLSIIMISMASELHAK-------PKYSSI---VIDVNKNQMTGF-KQDEPRYPASLTK 82
           I FL+I++ S    + A        P+ S++   ++D N  ++    KQ   R PASLTK
Sbjct: 7   IKFLTILICSFTLNIQAAIFITPKAPEISAVAYSIVDYNSGKVIASNKQHYKRAPASLTK 66

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT Y+IF+ + + ++ L  ++ +SK A     SK +++       E  +  +I +S ND
Sbjct: 67  LMTAYVIFQLISNDRIKLEDEVRISKKAWKTGGSKSFVEVGKTMKLETLLKGMIIQSGND 126

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E I+G E  F   M+  A+K+GM N+ ++NASGL D NQ TTA D  +L   + 
Sbjct: 127 SAVALAEHIAGDESTFTTYMNKYARKLGMNNSQFRNASGLPDNNQYTTAADIVLLATAII 186

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           K+FPQ+Y ++S ++F Y      N NKLL   H +DG+KTG+T+ +G+N+V S +     
Sbjct: 187 KDFPQFYLWYSEKEFTYHGIKQYNRNKLLWNDHTVDGLKTGFTKKAGYNLVASAKRLGMR 246

Query: 263 IVAVVMGMPTSQER---DQKALELITSFLEKKTLKH 295
           +++VV+G  +  +R    QK L+    F E KT+++
Sbjct: 247 LISVVLGSSSVNDRTSQTQKILDYGFRFFETKTIRN 282


>gi|84516588|ref|ZP_01003947.1| Probable penicillin-binding protein [Loktanella vestfoldensis
           SKA53]
 gi|84509624|gb|EAQ06082.1| Probable penicillin-binding protein [Loktanella vestfoldensis
           SKA53]
          Length = 521

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/253 (37%), Positives = 146/253 (57%), Gaps = 5/253 (1%)

Query: 36  FLSIIMISMASELH--AKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEY 92
           F  +I I +A+ +   A P Y+++V+D    ++   +  + R +PASLTKMMTLY+ F+ 
Sbjct: 15  FCVLIFILIAAPIRGVAAP-YAALVMDARTGEVLHARNADTRLHPASLTKMMTLYVAFQA 73

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           ++  ++ L+T++ V+  AA + PSKL L+          I A   RSAND +TA G  IS
Sbjct: 74  IERGEISLDTEVTVTSHAANEPPSKLGLRAGQRIRLRYLIRAAAVRSANDAATAIGIAIS 133

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           GSE+ FA  M+  A  +GM NT ++NA GL     ++TARD ++LG  +  +FPQYY  F
Sbjct: 134 GSEEAFATRMNQTAAAMGMSNTTFRNAHGLTQSGHLSTARDMSVLGRHVIYDFPQYYNLF 193

Query: 213 SIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           S R        + + N + L+     DGIKTG+T  SGF++V S +  D  I+A V G  
Sbjct: 194 SRRTADAGVATVQHTNRRWLDSYPGGDGIKTGFTNASGFSLVASAQRGDQRIIATVFGGT 253

Query: 272 TSQERDQKALELI 284
           ++  R+ +  EL+
Sbjct: 254 STAARNARISELM 266


>gi|46204603|ref|ZP_00049748.2| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 391

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 89/222 (40%), Positives = 130/222 (58%), Gaps = 8/222 (3%)

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI-LALITRSAND 142
           MTLY++FE L+  +  L++ + +S  AA    ++  L      +T  G+  A+  RS   
Sbjct: 1   MTLYMLFEQLEKGRYELDSPLTISANAAAPG-ARRRLGLAHPASTILGLRTAIKCRSVTQ 59

Query: 143 VST------AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
           V           E I+GSE +FA +M+ KAK +GM  T Y NASGL D +QITTA D  I
Sbjct: 60  VWPTSIRLPPSRENIAGSEPRFAEMMTRKAKALGMSRTHYANASGLPDPDQITTAHDLTI 119

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   ++  FP+YY+YF  R F +R R+I NHN LL  +  +DGIKTGYTR+SGFN++T+ 
Sbjct: 120 LARAIQDRFPRYYRYFQTRSFAFRGRVIGNHNHLLGNVEGVDGIKTGYTRDSGFNLMTAA 179

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
           +  D  IVA+V+G  +   RD+   +L+ + L +     +QT
Sbjct: 180 KLGDRQIVAIVLGGKSGASRDRIMADLVRANLPRAYAGARQT 221


>gi|288942562|ref|YP_003444802.1| beta-lactamase [Allochromatium vinosum DSM 180]
 gi|288897934|gb|ADC63770.1| Beta-lactamase [Allochromatium vinosum DSM 180]
          Length = 380

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 87/239 (36%), Positives = 141/239 (58%), Gaps = 4/239 (1%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           EL AK     +++D +  + +     DE   PASLTK+MT Y +F  L S+++ L  Q+ 
Sbjct: 33  ELEAK---GYLLVDFHTGKTLAELNADERLEPASLTKIMTAYTVFRELASERIKLTDQVL 89

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           VS+ A     SK++++   + + E  +  +I +S ND S A  E++SG+ + FA LM+  
Sbjct: 90  VSEKAWRTGGSKMFIEVGKHVSLEDLLKGMIIQSGNDASVALAEYVSGNVESFANLMNAH 149

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
           AK++GM N+ + N +GL D    TTARD A + + L + FP+YY ++S ++F Y      
Sbjct: 150 AKRLGMTNSHFTNPNGLPDPELYTTARDMARVAVALIREFPEYYAWYSNQEFTYNGITQA 209

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N LL +    DGIKTGYT+ +G+ +V S +  D  +++VVMG P+ + R + +L L+
Sbjct: 210 NRNPLLKRDPTADGIKTGYTKAAGYCLVGSAKRDDMRLISVVMGTPSPRARAEASLALL 268


>gi|121997803|ref|YP_001002590.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halorhodospira halophila
           SL1]
 gi|121589208|gb|ABM61788.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Halorhodospira halophila SL1]
          Length = 392

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 87/270 (32%), Positives = 151/270 (55%), Gaps = 15/270 (5%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSI--------------VIDVNKNQMTGFKQDEPR 75
           L+  +L + +I ++MA E    P   S+              ++D++   +   +  E  
Sbjct: 10  LVPALLTVGLIPMAMADERWGTPIVESVPTPSPPSVGAPSHLLVDMHSGYILAHRDPEES 69

Query: 76  Y-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           + PASL K+MT Y++FE L S  + L  ++ VS+ A   + S+++L+  T  T  + +  
Sbjct: 70  WEPASLAKIMTAYVVFEELASGHIGLEDKVTVSEKAWRSSGSRMFLEVGTEVTVAELLQG 129

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           LI +S ND + A  E ++G E+ FA +M+  A ++GM NT Y NA+G+  +   TTA+D 
Sbjct: 130 LIVQSGNDAAVALAEHVAGDEETFAQVMNQYASRLGMDNTHYTNATGMPHEQMRTTAQDT 189

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
           A L   +  +FP++Y ++S R F Y      N N+LL +   +DG+KTGYT ++G+N+VT
Sbjct: 190 ARLARAMIDDFPEFYDWYSQRSFEYAGINQHNRNRLLWRDETVDGLKTGYTSSAGYNLVT 249

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           S       +++VV+G  +   R Q++L+L+
Sbjct: 250 SAERGGMRLISVVLGTESEDARAQQSLQLL 279


>gi|254472440|ref|ZP_05085840.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Pseudovibrio
           sp. JE062]
 gi|211958723|gb|EEA93923.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Pseudovibrio
           sp. JE062]
          Length = 447

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 93/264 (35%), Positives = 149/264 (56%), Gaps = 4/264 (1%)

Query: 33  KILFLSIIMISMASELH-AKPKYSS-IVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYII 89
           K+ FL++  +++ S L  A+   ++ +++D +  Q+        R YPASLTKMMT Y+ 
Sbjct: 11  KVRFLAVFAVALGSLLSTARADIAAWLLMDADNGQVLEHNAAFDRWYPASLTKMMTAYVA 70

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           F+++    + ++  + VS+ A  Q PSK+  K  T  T +  +  ++ +SAND++ A  E
Sbjct: 71  FQHISRGDMAMSDMVMVSQNALNQPPSKMGFKVGTTITLDNALKMILVKSANDIAVAVAE 130

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            + G+E+ F  +M+  A+++GM +T + N  GL D  Q+TTARD AIL   L   FPQY 
Sbjct: 131 RVGGTEENFITMMNANARRMGMLHTNFVNPHGLPDNRQVTTARDMAILARELWNKFPQYR 190

Query: 210 KYFSIRKFRYRNRIITNHNK-LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            Y S    R+  R   + N+  L +    +G+KTGY  NSGFN+ TS       ++A+V+
Sbjct: 191 SYMSHPGIRFGRRTFRSGNRDFLLRTAGANGMKTGYICNSGFNVATSATRNGRTVIAIVL 250

Query: 269 GMPTSQERDQKALELITSFLEKKT 292
           G  +S ER   A +LI S  +K T
Sbjct: 251 GAASSLERSAFAKKLIDSGFKKTT 274


>gi|82703112|ref|YP_412678.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrosospira multiformis
           ATCC 25196]
 gi|82411177|gb|ABB75286.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Nitrosospira multiformis ATCC 25196]
          Length = 404

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 87/244 (35%), Positives = 141/244 (57%), Gaps = 7/244 (2%)

Query: 48  LHAKPKY------SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHL 100
            HA P+       S I+ D+   Q+   K    R  PASLTK+MT Y++F  L  K++ L
Sbjct: 48  FHAPPQTLSVAAKSYILADLQSGQVLVSKNAHERVDPASLTKLMTAYVVFAALYQKRVTL 107

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
              +PVS  A     S+++++ K   T ++ +  +I +S ND S A  E +SGSE+ FA 
Sbjct: 108 TQAVPVSTRAWRAQGSRMFIEPKKPVTVDELMRGMIVQSGNDASIALAEAVSGSEEAFAQ 167

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
            M+ +A ++GM+NT + N++GL D +  TTA D A+L   + ++FP+YY  +S++++ Y 
Sbjct: 168 AMNKEAARMGMKNTRFANSTGLPDPDHYTTAYDLALLATAIIRDFPEYYPLYSLKEYTYN 227

Query: 221 NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
                N N+LL    N+DG+KTG+T  +G+ ++TS R     +VAVVMG  +   R  ++
Sbjct: 228 KITQANRNRLLWLDPNVDGMKTGHTDAAGYCLITSARRGQRRLVAVVMGTASESARAMES 287

Query: 281 LELI 284
             L+
Sbjct: 288 QRLL 291


>gi|83308700|emb|CAJ01610.1| conserved hypothetical protein [Methylocapsa acidiphila]
          Length = 540

 Score =  162 bits (410), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 82/211 (38%), Positives = 124/211 (58%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           +P YPASLTK+MT+Y+  + ++  +L L+T + VS  AA+  PSK+  +  T  T    +
Sbjct: 38  QPWYPASLTKLMTVYVALKAVREHRLTLDTPLAVSARAASMPPSKMGFRPGTLVTLGNAM 97

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             L+ +SAND++    E ISGS + FA  M+  A  +G++ + + N +GL +   I++AR
Sbjct: 98  KMLMVKSANDLAVTIAEGISGSVEAFADEMNEAAASLGLRQSHFVNPNGLPNPQHISSAR 157

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           D A+L I L   FP+    FSI   R    IITNHN LL +   +DG+KTG+T  +GFN+
Sbjct: 158 DFAVLAIALYSTFPEQADLFSIGALRLGGDIITNHNNLLGRYPGVDGMKTGFTCAAGFNV 217

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           V S       ++AV++G P   +R  KA  L
Sbjct: 218 VASATQGGRKLIAVILGAPNVAQRTIKAAAL 248


>gi|148252530|ref|YP_001237115.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp.
           BTAi1]
 gi|146404703|gb|ABQ33209.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp.
           BTAi1]
          Length = 480

 Score =  162 bits (410), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 126/211 (59%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           P YPAS+TK+MT Y+  + ++  KL L+T + VS TAA Q+PSK+  +  T  T +  + 
Sbjct: 53  PWYPASVTKLMTAYVTLKAVKEGKLSLDTLVTVSPTAAAQSPSKMGYRPGTQLTVDNALK 112

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            ++ +SAND++    E + GS   F+ +M+  A+K+GM  T Y N +GL    QIT+ARD
Sbjct: 113 MMLVKSANDMAVVLAEGVGGSIDGFSAMMNETAQKLGMTQTSYVNPNGLPADGQITSARD 172

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            AIL   + ++ P+Y  +  I   RY  R++ N N+L+ +    DG KTG+   SG+N+V
Sbjct: 173 LAILARAIIRDLPEYEYFVHIPSIRYGRRVVQNFNRLIGRYPGADGFKTGFICASGYNLV 232

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            S       ++AVV+G  + Q R  +A++++
Sbjct: 233 ASATRNGKRLIAVVLGASSGQMRGVRAIQML 263


>gi|319409433|emb|CBI83082.1| Penicillin-binding protein [Bartonella schoenbuchensis R1]
          Length = 357

 Score =  162 bits (410), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 96/253 (37%), Positives = 145/253 (57%), Gaps = 6/253 (2%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL 93
           L LS I+ SM S L     Y  I +D    ++    Q  E  YPASLTK+MT Y+IF  +
Sbjct: 8   LCLSFIL-SMTSTLALA--YPFISVDAATGRILQHNQAFERWYPASLTKLMTTYVIFRAM 64

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            + ++     I +SK A+  +PS    +  +  T E  +   + +SAND++ A  E +SG
Sbjct: 65  STGEISPQKHITISKNASQASPSHSGYEAGSILTLETALSITLVKSANDLAIALSEAVSG 124

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S++ F   M+ +A+++GM  T + NASGL   +  TTARD A+L + +R+ FPQY  YFS
Sbjct: 125 SQEAFVQQMNVQAQRLGMFGTHFANASGLPHPDNYTTARDIALLAVQIRREFPQYAHYFS 184

Query: 214 IRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           I    + +  +I  N N L+N+ +  DG+KTG+T  SGFN+V S       I+AVV+G+ 
Sbjct: 185 IPAIDFGDGRKIKFNSNNLINRFYGTDGMKTGFTCASGFNLVASATRNKRTIIAVVLGLD 244

Query: 272 TSQERDQKALELI 284
           T   R+ KA +L+
Sbjct: 245 TINAREGKAAQLL 257


>gi|209886488|ref|YP_002290345.1| serine-type D-Ala-D-Ala carboxypeptidase [Oligotropha
           carboxidovorans OM5]
 gi|209874684|gb|ACI94480.1| serine-type D-Ala-D-Ala carboxypeptidase [Oligotropha
           carboxidovorans OM5]
          Length = 492

 Score =  162 bits (409), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 85/253 (33%), Positives = 143/253 (56%), Gaps = 3/253 (1%)

Query: 35  LFLSIIMISMASELHAKPKYSS--IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFE 91
           ++L  I  +++  L A+P  +   ++ID +  + +      +P YPASLTK+MT Y+   
Sbjct: 14  IWLIAIAAALSLSLWARPAQAEAYLLIDASSGKVLQATNATQPWYPASLTKIMTAYVTLS 73

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            ++  +++L+T + VS  A +Q PSK+     T  T +  +  ++ +SAND++    E +
Sbjct: 74  AVKQGRINLDTLLTVSPNALSQAPSKMGFPAGTQVTVDNALKMMMVKSANDMAVVLAEGV 133

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            GS   F+ LM+  A+++GM  T Y N +GL D  QI++ARD  IL     ++ P+Y  Y
Sbjct: 134 GGSVDGFSALMNETARQLGMTQTHYVNPNGLPDDRQISSARDLGILSRAFYRDLPEYQYY 193

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
             +   ++  RI  N NKL+ +    DG+KTG+   SGFN+V S    D  ++AVV+G  
Sbjct: 194 AHLPGIKFGRRITHNFNKLIGRYPGADGLKTGFICASGFNLVASATRNDRHLIAVVLGAS 253

Query: 272 TSQERDQKALELI 284
           +S +R  KA +L+
Sbjct: 254 SSAQRTVKAAQLL 266


>gi|182677354|ref|YP_001831500.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182633237|gb|ACB94011.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 538

 Score =  162 bits (409), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 89/255 (34%), Positives = 140/255 (54%), Gaps = 4/255 (1%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYI 88
           L G +   ++   ++     A P    +VID+ + N +   +   P YPASLTK+MTLY+
Sbjct: 43  LHGGLAIAAVATTTLTDTAQAAP---GLVIDLASGNVIYQSEATRPWYPASLTKLMTLYV 99

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
             + ++  ++  +T + VS  A    PSK+  K  T  T    +  L+ +SAND++    
Sbjct: 100 ALQAVRDHRIGFDTPLVVSARAHAMPPSKMGFKPGTQVTLGNALKMLMVKSANDIAITVA 159

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E I+GS + FA  M+ +A  +G++ + + N +GLH++   ++ARD A+L   L   FPQY
Sbjct: 160 EGIAGSVEAFAEDMNAQAADLGLRQSHFVNPNGLHNEQHYSSARDMALLARALYLRFPQY 219

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              ++I   R  N+II NHN LL +   +DG+KTGYT  +GFNIV S       ++ VV+
Sbjct: 220 ASLYNIGALRLGNQIIQNHNNLLGRYPGVDGMKTGYTCTAGFNIVASAEQSGRRVIVVVL 279

Query: 269 GMPTSQERDQKALEL 283
           G P  + R  KA  L
Sbjct: 280 GSPNVETRTIKAAAL 294


>gi|260461659|ref|ZP_05809906.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium
           opportunistum WSM2075]
 gi|259032729|gb|EEW33993.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium
           opportunistum WSM2075]
          Length = 387

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 89/257 (34%), Positives = 145/257 (56%), Gaps = 11/257 (4%)

Query: 33  KILFLSIIMIS-MASELHAKPKYSSIVIDVNKNQM----TGFKQDEPRYPASLTKMMTLY 87
           K+     IM+S +A    A P    +V D+   Q+      FK+    YPASL+K+MT Y
Sbjct: 8   KLFSAGAIMLSVLAGPTLANP---VVVFDLKSGQILQHQDAFKR---WYPASLSKLMTAY 61

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + F  + + ++ L++ I V+K +A + PSK+  K  +    +  +  ++ +SAND++ A 
Sbjct: 62  VTFRAIAAGEVQLDSPIKVTKHSAAEPPSKMGFKPGSVMRLDNALKMMLVKSANDIAMAV 121

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
           GE I GS+  FA  M+ +A ++GM  T + N +GL+  +Q TTARD A+L + +R+ FPQ
Sbjct: 122 GENIGGSQAAFAERMNAEAVRLGMNGTHFVNPNGLYSPDQYTTARDLAVLVMAIRREFPQ 181

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           Y  +FSI       + I N+N L+ +    DG+KTG+   SGFN++ S       +VAVV
Sbjct: 182 YAPWFSIEGLAVGKKAIPNYNLLIGRYPGADGMKTGFVCPSGFNMIGSATRNGRTLVAVV 241

Query: 268 MGMPTSQERDQKALELI 284
           +G  ++  R + A  L+
Sbjct: 242 LGEKSAVSRAEAAARLL 258


>gi|254707442|ref|ZP_05169270.1| D-alanyl-D-alanine carboxypeptidase [Brucella pinnipedialis
           M163/99/10]
 gi|261314930|ref|ZP_05954127.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M163/99/10]
 gi|261303956|gb|EEY07453.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M163/99/10]
          Length = 295

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 89/266 (33%), Positives = 147/266 (55%), Gaps = 11/266 (4%)

Query: 33  KILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYI 88
           +I F ++    +A S   A P   SI +DV   ++  ++Q +     YPASLTKMMT Y+
Sbjct: 7   RIWFAAVAFSGIALSGAAANP---SIAVDVATGKV--YEQQDAFQRWYPASLTKMMTAYV 61

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            F  LQS ++ L + + ++  A+ + PSK+  K  +  T +  +  ++ +SANDVS A  
Sbjct: 62  TFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVA 121

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E + G+E  F   M+ +A+++GM  + + N +GLHD N  TTARD A+L + LR+ FPQY
Sbjct: 122 EAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRREFPQY 181

Query: 209 YKYFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
             YF+          ++  N+N LL +    DG+KTG+   SGFN+  S       ++A+
Sbjct: 182 AHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRTVLAI 241

Query: 267 VMGMPTSQERDQKALELITSFLEKKT 292
           V+G    + R  +A +++T     ++
Sbjct: 242 VLGADRQETRAIQAAQMMTDAFRARS 267


>gi|118602482|ref|YP_903697.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567421|gb|ABL02226.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 375

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/271 (32%), Positives = 155/271 (57%), Gaps = 10/271 (3%)

Query: 34  ILFLSIIMISMASELHAKPKYSSI------VIDVNKNQ-MTGFKQDEPRYPASLTKMMTL 86
           ++ +S ++++  + +   PK   I      ++D N  + +   KQ + R PASLTK+MT 
Sbjct: 11  VILISSLVLNTQAVIFITPKAPKISTAAYSIVDYNSGKVIASSKQHDKRAPASLTKLMTA 70

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y++F+++   ++ L  ++ +SK A     SK +++       E  +  +I +S ND + A
Sbjct: 71  YVVFQFINDGRISLEDEVRISKKAWKTGGSKSFVEVGKSIKLETLLKGMIIQSGNDSAVA 130

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E I+G+E  F   M+  A+++GM N+ ++NASGL + NQ TTA D  +L I   ++FP
Sbjct: 131 LAEHIAGTESTFTTYMNEYARQLGMNNSWFENASGLPNDNQYTTAADITLLAIATIRDFP 190

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           ++Y+++S ++F Y      N NKLL   H +DG+KTG+T+ +G+N+V S +     +++V
Sbjct: 191 KFYQWYSQKEFTYHGIKQRNRNKLLWSDHTVDGLKTGFTKKAGYNLVASAKRAGMRLISV 250

Query: 267 VMGMPTSQER---DQKALELITSFLEKKTLK 294
           V+G  +   R    QK L+    F E +T+K
Sbjct: 251 VLGSSSVNARTSQTQKILDYGFRFFETQTIK 281


>gi|146343356|ref|YP_001208404.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp.
           ORS278]
 gi|146196162|emb|CAL80189.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp.
           ORS278]
          Length = 476

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 127/211 (60%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           P YPAS+TK+MT Y+  + ++  K  L+T + VS TAA+Q+PSK+  +  T  T +  + 
Sbjct: 53  PWYPASVTKLMTAYVTLKAVKDGKASLDTLLTVSPTAASQSPSKMGYRPGTQVTVDNALK 112

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            ++ +SAND++    E I GS   F+I+M+  A+++GM  T Y N +GL    QIT+ARD
Sbjct: 113 MMLVKSANDMAVVLAEGIGGSIDGFSIMMNETAQRLGMTQTSYVNPNGLPADGQITSARD 172

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            AIL   + ++ P+Y  +  I   RY  R++ N N+L+ +    DG KTG+   SG+N+V
Sbjct: 173 LAILARAIIRDLPEYEYFVHIPSIRYGRRVVQNFNRLIGRYPGADGFKTGFICASGYNLV 232

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            S       ++AVV+G  + Q R  +A++++
Sbjct: 233 ASATRNGKRLIAVVLGASSGQMRAVRAIQML 263


>gi|332286510|ref|YP_004418421.1| putative penicillin-binding protein precursor [Pusillimonas sp.
           T7-7]
 gi|330430463|gb|AEC21797.1| putative penicillin-binding protein precursor [Pusillimonas sp.
           T7-7]
          Length = 418

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 81/240 (33%), Positives = 145/240 (60%), Gaps = 2/240 (0%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           + +DVN  Q+   +  DEP  PASLTK+M+ Y++F+ L++ +L L  ++PVS+ A     
Sbjct: 77  MTLDVNSGQIIAAQNLDEPVEPASLTKLMSAYVVFDALENNRLSLEQKVPVSEKAWKTEG 136

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S++++K  +  + +  +  +I +S ND + A  E ++GSE  F  +M+ +A + G+++T 
Sbjct: 137 SRMFIKVNSQVSVDDLLQGVIVQSGNDATVALAEAVAGSEDAFVTIMNEEAARQGLRDTH 196

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           ++N++GL     +TTARD   L   L  +FPQY  Y+S ++F Y N    N N+LL    
Sbjct: 197 FENSTGLPGPTHLTTARDLGTLAKNLVTDFPQYLHYYSQKEFTYNNIKQNNRNRLLWSDP 256

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT-SFLEKKTLK 294
            +DG+KTG+T+++G+ +VT+       +V+V++G  +   R + +L+L+  SF    T+K
Sbjct: 257 TVDGLKTGHTQSAGYCLVTTALRDGRRVVSVIVGAASDAARTENSLKLLNWSFQNFDTIK 316


>gi|160872568|ref|ZP_02062700.1| penicillin-binding protein 6 (D-alanyl-D-alaninecarboxypeptidase
           fraction C) (DD-peptidase) (DD-carboxypeptidase) (PBP-6)
           [Rickettsiella grylli]
 gi|159121367|gb|EDP46705.1| penicillin-binding protein 6 (D-alanyl-D-alaninecarboxypeptidase
           fraction C) (DD-peptidase) (DD-carboxypeptidase) (PBP-6)
           [Rickettsiella grylli]
          Length = 397

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/281 (33%), Positives = 153/281 (54%), Gaps = 18/281 (6%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQ---MTGFKQ--------DEPRYPASLTKMMTLYII 89
           +I + +   A+P ++ I  +VN      M  +          DE   PASLTKMMT Y++
Sbjct: 28  VIPITAPTMAQPTFTPIAPNVNAKAYLLMDAYSGKILASKNIDEHLAPASLTKMMTSYVV 87

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
              LQ  ++HL   +P+S+ A     SK+++K     + +  +  +I  S ND   A  E
Sbjct: 88  SMALQQGRIHLTDLVPISEAAWKTGGSKMFVKVGDKVSVQDLMQGMIVDSGNDACVAMAE 147

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
           +I+GS++ F  LM+ +A ++GM+NT + +  GL D N  TTARD +IL   L  +FP+ Y
Sbjct: 148 YIAGSQESFVNLMNQQAARLGMKNTHFVDVDGLPDPNHYTTARDMSILARALILDFPEDY 207

Query: 210 KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           K++S + F Y      N N+LL +  ++DGIKTG+T  +GF +  S +     ++ +VMG
Sbjct: 208 KWYSQKWFSYNGIKQPNRNRLLWRNPDVDGIKTGHTNEAGFCLAASGQKNGLRLITIVMG 267

Query: 270 MPTSQERDQKALELIT---SFLEKKTLKHQQTHRKDNLSST 307
            P+ + R Q + +L+T    F E + L +      +NL++T
Sbjct: 268 APSDEVRAQDSQKLLTYGFRFFESRKLYNA----GENLATT 304


>gi|13473090|ref|NP_104657.1| penicillin-binding protein [Mesorhizobium loti MAFF303099]
 gi|14023838|dbj|BAB50443.1| penicillin-binding protein [Mesorhizobium loti MAFF303099]
          Length = 389

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/265 (33%), Positives = 148/265 (55%), Gaps = 11/265 (4%)

Query: 33  KILFLSIIMIS-MASELHAKPKYSSIVIDVNKNQM----TGFKQDEPRYPASLTKMMTLY 87
           K+     IM+S +A    A P    +V D+   Q+      FK+    YPASL+K+MT Y
Sbjct: 8   KLFSAGAIMLSVLAGSALANP---VVVFDLKNGQILQHQDAFKR---WYPASLSKLMTAY 61

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + F  + + ++ L++ I V+K +A + PSK+  K  +    +  +  ++ +SAND++ A 
Sbjct: 62  VTFRAIAAGEVQLDSPIKVTKHSAGEPPSKMGFKPGSVMRLDNALKMMLVKSANDIAMAV 121

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
           GE + GS+  FA  M+ +A ++GM  T + N +GL+  +Q TTARD ++L + +R+ FPQ
Sbjct: 122 GENVGGSQAAFAERMNAEAARLGMNGTHFVNPNGLYSPDQYTTARDLSVLVMAIRREFPQ 181

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           Y  +FSI       + I N+N L+ +    DG+KTG+   SGFN++ S       +VAVV
Sbjct: 182 YAPWFSIEGLAVGKKAIPNYNLLIGRYPGADGMKTGFVCPSGFNMIGSATRNGRTLVAVV 241

Query: 268 MGMPTSQERDQKALELITSFLEKKT 292
           +G  ++  R + A +L+    +  T
Sbjct: 242 LGEKSAVSRAEAAAKLLDQGFDTPT 266


>gi|119896472|ref|YP_931685.1| D-alanyl-D-alanine carboxypeptidase [Azoarcus sp. BH72]
 gi|119668885|emb|CAL92798.1| probable D-alanyl-D-alanine carboxypeptidase [Azoarcus sp. BH72]
          Length = 376

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 83/242 (34%), Positives = 147/242 (60%), Gaps = 5/242 (2%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A  L AK   + +++D N  Q+      + R  PASLTK+MT Y+ F  L++  + L+  
Sbjct: 23  APALAAK---AWVLVDHNTGQVLAANDPDARIEPASLTKLMTAYLTFSALKAGTIALDQP 79

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           +PVS+ A  Q  S+++++ +   T ++ I  +I +S ND   A  E I+G+E+ FA +M+
Sbjct: 80  VPVSERAWRQEGSRMFIEPQKPVTVQELIRGVIVQSGNDACVALAELIAGTEEAFAAMMN 139

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-KYFSIRKFRYRNR 222
            +A+++GM NT + N++GL D    TTA+D A+L   + ++FP YY   +S++++RY N 
Sbjct: 140 REAQRLGMSNTHFTNSTGLPDPQLYTTAKDLALLASAIIRDFPDYYASLYSLKEYRYNNI 199

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
              N N+LL     +DG+KTG+T ++G+ +++S       +V+VV+G  +   R Q++L+
Sbjct: 200 TQPNRNRLLWMDSTVDGMKTGHTSSAGYCLISSALRGPRRLVSVVLGAESDTVRAQESLK 259

Query: 283 LI 284
           L+
Sbjct: 260 LL 261


>gi|49476281|ref|YP_034322.1| penicillin-binding protein [Bartonella henselae str. Houston-1]
 gi|49239089|emb|CAF28392.1| Penicillin-binding protein [Bartonella henselae str. Houston-1]
          Length = 368

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/264 (36%), Positives = 149/264 (56%), Gaps = 7/264 (2%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL 93
           LFLS ++   +S   A+P    I +DV   ++    Q  E  YPASLTK+MT Y+IF  +
Sbjct: 8   LFLSFVLSFTSSLALAQP---FISVDVKTGRILEHNQAFERWYPASLTKLMTAYVIFRAM 64

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
              ++  N  I +S+ AA     +   K  +  T +  +   + +S ND++ A  E ++G
Sbjct: 65  SRGEISSNKHITISEYAAKAPTYRSGYKAGSVLTLDTALSITMVKSTNDLAIAMSEAVAG 124

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+K F   M+ +A+++GM  T + NASGL D N  +TARD A+L I +R+ FPQY  YFS
Sbjct: 125 SQKAFVKKMNAEAQRLGMFGTHFANASGLPDPNNYSTARDIALLAIQIRREFPQYAHYFS 184

Query: 214 IRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           I    + N  +I  N N L+ +   IDG+KTG+   SGFN+V S       I+AV++G  
Sbjct: 185 IPAIDFGNKRKIQPNSNNLIGRFDGIDGMKTGFICASGFNLVASATRNKRTIIAVILGSK 244

Query: 272 TSQERDQKALELI-TSFLEKKTLK 294
              ER++KA +L+ T F  + +L+
Sbjct: 245 NISEREKKAAKLLETGFSRQGSLQ 268


>gi|317401414|gb|EFV82047.1| penicillin-binding protein [Achromobacter xylosoxidans C54]
          Length = 356

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/240 (36%), Positives = 141/240 (58%), Gaps = 2/240 (0%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           IVIDVN  Q +     D    PASLTK+MT Y++F  L+ K+L L   +PVS+ A     
Sbjct: 15  IVIDVNSGQTLAASNPDMKVEPASLTKIMTAYVVFNALEEKRLTLEQTVPVSEHAWRTGG 74

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S+++++ +   T ++    +I +S ND S A  E + GSE  FA LM+ +A+++GM+NT 
Sbjct: 75  SRMFIEPRKPVTVDELNQGMIVQSGNDASVALAEAVGGSEAAFATLMNQEAERLGMRNTH 134

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           + NA+GL D   +T+ RD A L   L  + PQ++ Y+  + F Y      N N+LL    
Sbjct: 135 FMNATGLPDPQHMTSTRDLATLSAHLITDHPQFFHYYKQKSFTYNKITQPNRNRLLWADP 194

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT-SFLEKKTLK 294
           ++DG+KTG+T ++G+ +V++    D  I+ VV+G  +   R +++L+L+  SF    T+K
Sbjct: 195 SVDGMKTGHTDSAGYCLVSTAVRGDRRILVVVVGTDSEATRAEESLKLLNWSFQNFDTVK 254


>gi|257092335|ref|YP_003165976.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044859|gb|ACV34047.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 378

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/249 (33%), Positives = 148/249 (59%), Gaps = 5/249 (2%)

Query: 41  MISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSK 96
           +++ A +L   P  ++   ++I+    Q    +  + R  PASLTK+MT Y+ F  L+  
Sbjct: 17  VVASAQQLPTPPALAAKSWLLIEAASGQELAAQAPDQRLDPASLTKLMTAYLSFAALKQG 76

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
            L ++  +PVS+ A     S+++++  T    E  +  +I +S ND   A  E I+G E+
Sbjct: 77  TLKVDQPVPVSQKAWKTGGSRMFIQVGTQVKVEDLLKGMIVQSGNDACVALAEAIAGDEE 136

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP-QYYKYFSIR 215
            FA +M+ +A+++GM+ + ++N+SGL D    TTARD A L   L ++FP +Y KY+S++
Sbjct: 137 NFAQMMNREAQRLGMKGSSFRNSSGLPDPQHYTTARDLATLAGALIRDFPDEYAKYYSLK 196

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           +FRY N    N N+LL     +DG+KTG+T  +G+ +V+S +     +++VV+G P+   
Sbjct: 197 EFRYNNITQPNRNRLLWIDPTVDGLKTGHTEAAGYCLVSSAKRGPRRLLSVVLGAPSDSV 256

Query: 276 RDQKALELI 284
           R Q++L+L+
Sbjct: 257 RAQESLKLL 265


>gi|254718081|ref|ZP_05179892.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. 83/13]
 gi|265983032|ref|ZP_06095767.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
 gi|264661624|gb|EEZ31885.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
          Length = 371

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/266 (33%), Positives = 147/266 (55%), Gaps = 11/266 (4%)

Query: 33  KILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYI 88
           +I F ++    +A S   A P   SI +DV   ++  ++Q +     YPASLTKMMT Y+
Sbjct: 7   RIWFAAVAFSGIALSGAAANP---SIAVDVATGKV--YEQQDAFQRWYPASLTKMMTAYV 61

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            F  LQS ++ L + + ++  A+ + PSK+  K  +  T +  +  ++ +SANDVS A  
Sbjct: 62  TFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVA 121

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E + G+E  F   M+ +A+++GM  + + N +GLHD N  TTARD A+L + LR+ FPQY
Sbjct: 122 EAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRREFPQY 181

Query: 209 YKYFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
             YF+          ++  N+N LL +    DG+KTG+   SGFN+  S       ++A+
Sbjct: 182 AHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRTVLAI 241

Query: 267 VMGMPTSQERDQKALELITSFLEKKT 292
           V+G    + R  +A +++T     ++
Sbjct: 242 VLGADRQETRAIQAAQMMTDAFRARS 267


>gi|49474795|ref|YP_032837.1| penicillin-binding protein [Bartonella quintana str. Toulouse]
 gi|49240299|emb|CAF26780.1| Penicillin-binding protein [Bartonella quintana str. Toulouse]
          Length = 365

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/264 (36%), Positives = 150/264 (56%), Gaps = 7/264 (2%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL 93
           LFLS I+   ++ + A+P    I +DV   ++    Q  E  YPASLTK+MT Y+IF  +
Sbjct: 8   LFLSFILNLTSTIVLAQP---FISVDVTTGRILEHNQAFERWYPASLTKLMTAYVIFRAM 64

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
              K+  N  I +S+ AA         K  +  T +  +   + +S ND++ A  E ++G
Sbjct: 65  SIGKISSNKHITISEYAAKAPTYHSGYKAGSVLTLDTALSITMVKSTNDLAIAMSEAVAG 124

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+K F   M+ +A+++GM  T + NASGL D +  +TARD A+L + +R+ FPQY  YFS
Sbjct: 125 SQKAFVQQMNAEAQRLGMFGTHFTNASGLPDPHNYSTARDIALLAVQIRREFPQYAHYFS 184

Query: 214 IRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           I    + N  +I  N N L+ +   IDG+KTG+   SGFN+V S       I+AV++G  
Sbjct: 185 IPAIDFGNKRKIQPNSNNLIGRFDGIDGMKTGFICASGFNLVASATRNKRTIIAVILGSN 244

Query: 272 TSQERDQKALELIT-SFLEKKTLK 294
           T  ER++KA +L+   FL + +L+
Sbjct: 245 TISEREEKAAQLLERGFLHQGSLQ 268


>gi|71905933|ref|YP_283520.1| penicillin-binding protein 6 [Dechloromonas aromatica RCB]
 gi|71845554|gb|AAZ45050.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Dechloromonas aromatica RCB]
          Length = 391

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 89/257 (34%), Positives = 153/257 (59%), Gaps = 7/257 (2%)

Query: 35  LFLSIIMI--SMASELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYI 88
           + LSI+    +MA +L   P  ++   ++++V  NQ +T  K DE   PASLTK+MT Y+
Sbjct: 22  ILLSIVTAGQAMAQQLPVPPALAAKSWLLLEVGSNQVLTAEKSDERLEPASLTKLMTAYL 81

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            F  ++ K + L+  +PVS+ A     SK++++  T    E  I  +I +S ND      
Sbjct: 82  TFAAIRQKTIGLSQTLPVSEKAWRTGGSKMFVRVDTQVPVEDLIKGMIVQSGNDACVTLA 141

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ- 207
           E I+GSE+ FA +M+ +A+++GM N+ + N++GL D    TTARD ++L   L ++FP+ 
Sbjct: 142 EGIAGSEENFAQMMNREAQRLGMTNSHFINSTGLPDPQHYTTARDLSLLASALIRDFPED 201

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           Y KY+S+++FRY N    N N+LL     +DG+KTG+T  +G+ +++S       +++VV
Sbjct: 202 YKKYYSMKEFRYNNITQPNRNRLLFIDPTVDGVKTGHTEAAGYCLISSALRDKRRLLSVV 261

Query: 268 MGMPTSQERDQKALELI 284
           +G  +   R  ++ +L+
Sbjct: 262 LGTTSDSARATESQKLL 278


>gi|306839705|ref|ZP_07472507.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NF 2653]
 gi|306405165|gb|EFM61442.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NF 2653]
          Length = 370

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 89/266 (33%), Positives = 147/266 (55%), Gaps = 11/266 (4%)

Query: 33  KILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYI 88
           +I F ++    +A S   A P   SI +DV   ++  ++Q +     YPASLTKMMT Y+
Sbjct: 6   RIWFAAVAFSGIALSGAAANP---SIAVDVATGKV--YEQQDAFQRWYPASLTKMMTAYV 60

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            F  LQS ++ L + + ++  A+ + PSK+  K  +  T +  +  ++ +SANDVS A  
Sbjct: 61  TFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVA 120

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E + G+E  F   M+ +A+++GM  + + N +GLHD N  TTARD A+L + LR+ FPQY
Sbjct: 121 EAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRREFPQY 180

Query: 209 YKYFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
             YF+          ++  N+N LL +    DG+KTG+   SGFN+  S       ++A+
Sbjct: 181 AHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRTVLAI 240

Query: 267 VMGMPTSQERDQKALELITSFLEKKT 292
           V+G    + R  +A +++T     ++
Sbjct: 241 VLGADRQETRAIQAAQMMTDAFRARS 266


>gi|23502884|ref|NP_699011.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330]
 gi|62290881|ref|YP_222674.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str.
           9-941]
 gi|82700793|ref|YP_415367.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis biovar
           Abortus 2308]
 gi|237816389|ref|ZP_04595382.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A]
 gi|254690170|ref|ZP_05153424.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 6 str.
           870]
 gi|254694661|ref|ZP_05156489.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 3 str.
           Tulya]
 gi|254700670|ref|ZP_05162498.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis bv. 5 str. 513]
 gi|254731203|ref|ZP_05189781.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 4 str.
           292]
 gi|256060003|ref|ZP_05450185.1| D-alanyl-D-alanine carboxypeptidase [Brucella neotomae 5K33]
 gi|256258424|ref|ZP_05463960.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 9 str.
           C68]
 gi|256370435|ref|YP_003107946.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915]
 gi|260546143|ref|ZP_05821883.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038]
 gi|260567492|ref|ZP_05837962.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40]
 gi|260755709|ref|ZP_05868057.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
           str. 870]
 gi|260758934|ref|ZP_05871282.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
           str. 292]
 gi|260760656|ref|ZP_05872999.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260884736|ref|ZP_05896350.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
           str. C68]
 gi|261214985|ref|ZP_05929266.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
           str. Tulya]
 gi|261323978|ref|ZP_05963175.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
 gi|261751178|ref|ZP_05994887.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
           513]
 gi|261755741|ref|ZP_05999450.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
           686]
 gi|294851267|ref|ZP_06791940.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026]
 gi|297247266|ref|ZP_06930984.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str.
           B3196]
 gi|306842839|ref|ZP_07475479.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO2]
 gi|23348913|gb|AAN30926.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330]
 gi|62197013|gb|AAX75313.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str.
           9-941]
 gi|82616894|emb|CAJ11993.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella
           melitensis biovar Abortus 2308]
 gi|237788456|gb|EEP62671.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A]
 gi|256000598|gb|ACU48997.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915]
 gi|260096250|gb|EEW80126.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038]
 gi|260157010|gb|EEW92090.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40]
 gi|260669252|gb|EEX56192.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
           str. 292]
 gi|260671088|gb|EEX57909.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260675817|gb|EEX62638.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
           str. 870]
 gi|260874264|gb|EEX81333.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
           str. C68]
 gi|260916592|gb|EEX83453.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
           str. Tulya]
 gi|261299958|gb|EEY03455.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
 gi|261740931|gb|EEY28857.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
           513]
 gi|261745494|gb|EEY33420.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
           686]
 gi|294819856|gb|EFG36855.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026]
 gi|297174435|gb|EFH33782.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str.
           B3196]
 gi|306287033|gb|EFM58544.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO2]
          Length = 371

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 89/266 (33%), Positives = 147/266 (55%), Gaps = 11/266 (4%)

Query: 33  KILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYI 88
           +I F ++    +A S   A P   SI +DV   ++  ++Q +     YPASLTKMMT Y+
Sbjct: 7   RIWFAAVAFSGIALSGAAANP---SIAVDVATGKV--YEQQDAFQRWYPASLTKMMTAYV 61

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            F  LQS ++ L + + ++  A+ + PSK+  K  +  T +  +  ++ +SANDVS A  
Sbjct: 62  TFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVA 121

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E + G+E  F   M+ +A+++GM  + + N +GLHD N  TTARD A+L + LR+ FPQY
Sbjct: 122 EAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRREFPQY 181

Query: 209 YKYFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
             YF+          ++  N+N LL +    DG+KTG+   SGFN+  S       ++A+
Sbjct: 182 AHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRTVLAI 241

Query: 267 VMGMPTSQERDQKALELITSFLEKKT 292
           V+G    + R  +A +++T     ++
Sbjct: 242 VLGADRQETRAIQAAQMMTDAFRARS 267


>gi|254713557|ref|ZP_05175368.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti M644/93/1]
 gi|254716088|ref|ZP_05177899.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti M13/05/1]
 gi|261217856|ref|ZP_05932137.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
 gi|261321294|ref|ZP_05960491.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
 gi|260922945|gb|EEX89513.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
 gi|261293984|gb|EEX97480.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
          Length = 371

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 89/266 (33%), Positives = 147/266 (55%), Gaps = 11/266 (4%)

Query: 33  KILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYI 88
           +I F ++    +A S   A P   SI +DV   ++  ++Q +     YPASLTKMMT Y+
Sbjct: 7   RIWFAAVAFSGIALSGAAANP---SIAVDVATGKV--YEQQDAFQRWYPASLTKMMTAYV 61

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            F  LQS ++ L + + ++  A+ + PSK+  K  +  T +  +  ++ +SANDVS A  
Sbjct: 62  TFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVA 121

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E + G+E  F   M+ +A+++GM  + + N +GLHD N  TTARD A+L + LR+ FPQY
Sbjct: 122 EAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRREFPQY 181

Query: 209 YKYFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
             YF+          ++  N+N LL +    DG+KTG+   SGFN+  S       ++A+
Sbjct: 182 AHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRTVLAI 241

Query: 267 VMGMPTSQERDQKALELITSFLEKKT 292
           V+G    + R  +A +++T     ++
Sbjct: 242 VLGADRQETRAIQAAQMMTDAFRARS 267


>gi|218675296|ref|ZP_03524965.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli GR56]
          Length = 370

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/254 (34%), Positives = 139/254 (54%), Gaps = 5/254 (1%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPASLTK+MT+Y +F+ +++ ++ L+T I +SK AA Q  +K+Y K     T +  +  L
Sbjct: 51  YPASLTKLMTVYTVFDAIRAGQISLDTPIVMSKRAAAQPAAKMYFKPGQKLTLDSALKIL 110

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + +SANDVS A  E I G+++ F   M+ +A K+GM ++ + N +GL  K Q TTARD A
Sbjct: 111 LVKSANDVSVAVAEAIGGTQEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLA 170

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           +L + LR++FPQY  YF++  F    + + N N L+ +    DG+KTG+   SGFN + S
Sbjct: 171 VLTVALRRDFPQYASYFALEGFTTGQQNVPNLNMLIGRFAGADGMKTGFICASGFNQIGS 230

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELI-----TSFLEKKTLKHQQTHRKDNLSSTSLK 310
                  +V+VV+G  +   R      L+     T F    TL   + + +     T + 
Sbjct: 231 ATRNGRTLVSVVLGTDSLAARADATANLLQKGFTTQFPGNDTLGSLKAYEQGQDQVTDIT 290

Query: 311 KSLMIKKLKRTYSQ 324
             +   K  +  S+
Sbjct: 291 ADICSAKGAKIRSE 304


>gi|161619952|ref|YP_001593839.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC
           23365]
 gi|189025096|ref|YP_001935864.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus
           S19]
 gi|254696286|ref|ZP_05158114.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254705040|ref|ZP_05166868.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis bv. 3 str. 686]
 gi|161336763|gb|ABX63068.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC
           23365]
 gi|189020668|gb|ACD73390.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus
           S19]
          Length = 370

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 89/266 (33%), Positives = 147/266 (55%), Gaps = 11/266 (4%)

Query: 33  KILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYI 88
           +I F ++    +A S   A P   SI +DV   ++  ++Q +     YPASLTKMMT Y+
Sbjct: 6   RIWFAAVAFSGIALSGAAANP---SIAVDVATGKV--YEQQDAFQRWYPASLTKMMTAYV 60

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            F  LQS ++ L + + ++  A+ + PSK+  K  +  T +  +  ++ +SANDVS A  
Sbjct: 61  TFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVA 120

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E + G+E  F   M+ +A+++GM  + + N +GLHD N  TTARD A+L + LR+ FPQY
Sbjct: 121 EAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRREFPQY 180

Query: 209 YKYFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
             YF+          ++  N+N LL +    DG+KTG+   SGFN+  S       ++A+
Sbjct: 181 AHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRTVLAI 240

Query: 267 VMGMPTSQERDQKALELITSFLEKKT 292
           V+G    + R  +A +++T     ++
Sbjct: 241 VLGADRQETRAIQAAQMMTDAFRARS 266


>gi|116254096|ref|YP_769934.1| penicillin-binding protein precursor [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115258744|emb|CAK09850.1| putative penicillin-binding protein precursor [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 377

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 77/194 (39%), Positives = 121/194 (62%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPASLTK+MT+Y +F+ +++ ++ L+T + +SK AA Q  +K+Y K     T +  +  L
Sbjct: 58  YPASLTKLMTVYTVFDAIRAGQISLDTPVVISKRAAAQPAAKMYFKPGQKLTLDSALKIL 117

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + +SANDV+ A  E I G+++ F   M+ +A K+GM ++ + N +GL  K Q TTARD A
Sbjct: 118 LVKSANDVAVAVAEAIGGTQEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLA 177

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           +L + LR++FPQY  YFS+  F    + + N N L+ +    DG+KTG+   SGFN + S
Sbjct: 178 VLTVALRRDFPQYAGYFSLEGFTNGQQNVPNLNMLIGRFAGADGMKTGFICASGFNQIGS 237

Query: 256 LRYKDDPIVAVVMG 269
                  +V+VV+G
Sbjct: 238 ATRNGRTLVSVVLG 251


>gi|306843463|ref|ZP_07476064.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO1]
 gi|306276154|gb|EFM57854.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO1]
          Length = 370

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 89/266 (33%), Positives = 147/266 (55%), Gaps = 11/266 (4%)

Query: 33  KILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYI 88
           +I F ++    +A S   A P   SI +DV   ++  ++Q +     YPASLTKMMT Y+
Sbjct: 6   RIWFAAVAFSGIALSGAAANP---SIAVDVATGKV--YEQQDAFQRWYPASLTKMMTAYV 60

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            F  LQS ++ L + + ++  A+ + PSK+  K  +  T +  +  ++ +SANDVS A  
Sbjct: 61  TFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVA 120

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E + G+E  F   M+ +A+++GM  + + N +GLHD N  TTARD A+L + LR+ FPQY
Sbjct: 121 EAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRREFPQY 180

Query: 209 YKYFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
             YF+          ++  N+N LL +    DG+KTG+   SGFN+  S       ++A+
Sbjct: 181 AHYFATEAIDPGAGKKVQANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRTVLAI 240

Query: 267 VMGMPTSQERDQKALELITSFLEKKT 292
           V+G    + R  +A +++T     ++
Sbjct: 241 VLGADRQETRAIQAAQMMTDAFRARS 266


>gi|323139480|ref|ZP_08074528.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylocystis
           sp. ATCC 49242]
 gi|322395282|gb|EFX97835.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylocystis
           sp. ATCC 49242]
          Length = 530

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 85/241 (35%), Positives = 138/241 (57%), Gaps = 10/241 (4%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR---YPASLTKMMTLYIIFE 91
           +FL+ ++   A    A P   S+VIDV   Q+   +QD+     YPASLTK+MT Y+  +
Sbjct: 15  IFLAAVVT--AGRAGATP---SLVIDVASGQV--LEQDQATASWYPASLTKLMTAYVALD 67

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            +++ ++ ++T + +S  A    PSK+  +  +  T    ++ L+ +SAND++ A  E +
Sbjct: 68  AVRAGRISMDTPLMMSPRACRMAPSKMGFRAGSEVTLHNALIMLMVKSANDIAVAIAEGV 127

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           SGS + FA  M+  +  +GM  + + N +GL D  Q+T+ARD AILG  L   FP+Y   
Sbjct: 128 SGSVEAFADEMNRASANLGMTQSQWVNPNGLPDSRQVTSARDLAILGRALYLQFPEYAYL 187

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           F+I   +   R+   HN LL +    DG+KTG+T  +GFN+V S  +    ++AVV+G P
Sbjct: 188 FNIGAMQIGGRVHPTHNGLLGRYPGADGMKTGFTCPAGFNLVASATHGGQRLIAVVLGAP 247

Query: 272 T 272
           +
Sbjct: 248 S 248


>gi|316935787|ref|YP_004110769.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris DX-1]
 gi|315603501|gb|ADU46036.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris DX-1]
          Length = 483

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 164/313 (52%), Gaps = 17/313 (5%)

Query: 36  FLSIIMISMASELHAKPKYSS----IVIDVNKNQMTGFKQDE---PRYPASLTKMMTLYI 88
           FL+I+  ++ S L   P+ +S    ++I+ +  ++   + D    P +PASLTK+MT+Y+
Sbjct: 14  FLAIVAAALLS-LTVLPRAASAEALLLIEADTGKV--LQADNATYPWHPASLTKLMTMYV 70

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
             + ++  +L  ++ + VS  AA Q+PSK+     T  T +  +  ++ +SAND++    
Sbjct: 71  TLQAVKQGRLTQDSLLTVSPIAAAQSPSKMGFGPGTQITVDNALKMMMVKSANDMAVVLA 130

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E + GS   F+ +M++ A ++GM  T Y N +GL    Q+T+ARDQAIL   + ++ P+Y
Sbjct: 131 EGVGGSVDGFSAMMNDTAARLGMTQTRYVNPNGLPADEQVTSARDQAILARAVIRDLPEY 190

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             Y  I   R+  R+  N NKL+ +    DG KTG+   SG+N+V S       ++AVV+
Sbjct: 191 EYYVHIPAIRFGKRVTRNFNKLIGRYPGADGFKTGFICASGYNLVASATRNGRRLIAVVL 250

Query: 269 GMPTSQERDQKALELITSFLEKKTLKH--QQTHRKDNLSSTS-----LKKSLMIKKLKRT 321
           G  + Q+R  KA +L+       TL          DNL+  +     L+  +   K KR 
Sbjct: 251 GANSGQDRAVKAAQLLERGFSTNTLAWLTPSLGTVDNLAPIAATPPDLRDEMCGPKRKRP 310

Query: 322 YSQFKKIDAKAHS 334
            S   +  A A S
Sbjct: 311 ASDEDETVANALS 323


>gi|319781232|ref|YP_004140708.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317167120|gb|ADV10658.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 387

 Score =  159 bits (403), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 141/260 (54%), Gaps = 4/260 (1%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPASL+K+MT Y+ F  + + ++ L++ I V+K +A + PSK+  K  +    +  +  +
Sbjct: 50  YPASLSKLMTAYVTFRAIAAGEVQLDSPIKVTKHSAAEPPSKMGFKPGSVMRLDNALKMM 109

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + +SAND++ A GE + GS+  FA  M+ +A ++GM  T + N +GL+  +Q TTARD A
Sbjct: 110 LVKSANDIAMAVGENVGGSQAAFADRMNAEATRLGMNGTHFVNPNGLYSPDQYTTARDLA 169

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           +L + +R+ FPQY  +FSI       + I N+N L+ +    DG+KTG+   SGFN++ S
Sbjct: 170 VLVMAIRREFPQYVPWFSIEGLAVGKKAIPNYNLLIGRYPGADGMKTGFVCPSGFNMIGS 229

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQ----THRKDNLSSTSLKK 311
                  +VAVV+G  ++  R + A +L+    +                D +S   ++ 
Sbjct: 230 ATRNGRTLVAVVLGEKSAVTRAETAAKLLDQGFDTPVAGSATVTTLAPYGDTVSPNDMQD 289

Query: 312 SLMIKKLKRTYSQFKKIDAK 331
            +  KK  +  S+     AK
Sbjct: 290 EVCKKKTPQEQSEAPPAAAK 309


>gi|254709015|ref|ZP_05170826.1| cobalamin synthesis protein P47K [Brucella pinnipedialis B2/94]
 gi|256030540|ref|ZP_05444154.1| cobalamin synthesis protein P47K [Brucella pinnipedialis M292/94/1]
 gi|256158532|ref|ZP_05456426.1| cobalamin synthesis protein P47K [Brucella ceti M490/95/1]
 gi|265987587|ref|ZP_06100144.1| cobalamin synthesis protein P47K [Brucella pinnipedialis M292/94/1]
 gi|264659784|gb|EEZ30045.1| cobalamin synthesis protein P47K [Brucella pinnipedialis M292/94/1]
          Length = 635

 Score =  159 bits (403), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 88/266 (33%), Positives = 143/266 (53%), Gaps = 11/266 (4%)

Query: 33  KILFLSIIMISMASELHAKPKYSSIVIDVNKN----QMTGFKQDEPRYPASLTKMMTLYI 88
           +I F ++    +A  L       SI +DV       Q   F++    YPASLTKMMT Y+
Sbjct: 7   RIWFAAVAFSGIA--LSGAAANPSIAVDVATGKVYEQQDAFQR---WYPASLTKMMTAYV 61

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            F  LQS ++ L + + ++  A+ + PSK+  K  +  T +  +  ++ +SANDVS A  
Sbjct: 62  TFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVA 121

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E + G+E  F   M+ +A+++GM  + + N +GLHD N  TTARD A+L + LR+ FPQY
Sbjct: 122 EAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRREFPQY 181

Query: 209 YKYFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
             YF+          ++  N+N LL +    DG+KTG+   SGFN+  S       ++A+
Sbjct: 182 AHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRTVLAI 241

Query: 267 VMGMPTSQERDQKALELITSFLEKKT 292
           V+G    + R  +A +++T     ++
Sbjct: 242 VLGADRQETRAIQAAQMMTDAFRARS 267


>gi|256045637|ref|ZP_05448515.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256112362|ref|ZP_05453283.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 3 str.
           Ether]
 gi|256263050|ref|ZP_05465582.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
           str. 63/9]
 gi|260562941|ref|ZP_05833427.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
           16M]
 gi|265992060|ref|ZP_06104617.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265993797|ref|ZP_06106354.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
           str. Ether]
 gi|260152957|gb|EEW88049.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
           16M]
 gi|262764778|gb|EEZ10699.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
           str. Ether]
 gi|263003126|gb|EEZ15419.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263092926|gb|EEZ17101.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
           str. 63/9]
 gi|326410032|gb|ADZ67097.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis M28]
 gi|326539748|gb|ADZ87963.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis
           M5-90]
          Length = 371

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 89/266 (33%), Positives = 147/266 (55%), Gaps = 11/266 (4%)

Query: 33  KILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYI 88
           +I F ++    +A S   A P   SI +DV   ++  ++Q +     YPASLTKMMT Y+
Sbjct: 7   RIWFAAVAFSGIALSGAAANP---SIAVDVATGKV--YEQQDAFQRWYPASLTKMMTAYV 61

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            F  LQS ++ L + + ++  A+ + PSK+  K  +  T +  +  ++ +SANDVS A  
Sbjct: 62  TFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVA 121

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E + G+E  F   M+ +A+++GM  + + N +GLHD N  TTARD A+L + LR+ FPQY
Sbjct: 122 EAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRREFPQY 181

Query: 209 YKYFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
             YF+          ++  N+N LL +    DG+KTG+   SGFN+  S       ++A+
Sbjct: 182 AHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRTLLAI 241

Query: 267 VMGMPTSQERDQKALELITSFLEKKT 292
           V+G    + R  +A +++T     ++
Sbjct: 242 VLGADRQETRAIQAAQMMTDAFRARS 267


>gi|256253946|ref|ZP_05459482.1| cobalamin synthesis protein P47K [Brucella ceti B1/94]
          Length = 630

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 88/266 (33%), Positives = 143/266 (53%), Gaps = 11/266 (4%)

Query: 33  KILFLSIIMISMASELHAKPKYSSIVIDVNKN----QMTGFKQDEPRYPASLTKMMTLYI 88
           +I F ++    +A  L       SI +DV       Q   F++    YPASLTKMMT Y+
Sbjct: 2   RIWFAAVAFSGIA--LSGAAANPSIAVDVATGKVYEQQDAFQR---WYPASLTKMMTAYV 56

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            F  LQS ++ L + + ++  A+ + PSK+  K  +  T +  +  ++ +SANDVS A  
Sbjct: 57  TFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVA 116

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E + G+E  F   M+ +A+++GM  + + N +GLHD N  TTARD A+L + LR+ FPQY
Sbjct: 117 EAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRREFPQY 176

Query: 209 YKYFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
             YF+          ++  N+N LL +    DG+KTG+   SGFN+  S       ++A+
Sbjct: 177 AHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRTVLAI 236

Query: 267 VMGMPTSQERDQKALELITSFLEKKT 292
           V+G    + R  +A +++T     ++
Sbjct: 237 VLGADRQETRAIQAAQMMTDAFRARS 262


>gi|17986319|ref|NP_538953.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
           16M]
 gi|225853470|ref|YP_002733703.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC
           23457]
 gi|17981904|gb|AAL51217.1| d-alanyl-d-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
           16M]
 gi|225641835|gb|ACO01749.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC
           23457]
          Length = 370

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 89/266 (33%), Positives = 147/266 (55%), Gaps = 11/266 (4%)

Query: 33  KILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYI 88
           +I F ++    +A S   A P   SI +DV   ++  ++Q +     YPASLTKMMT Y+
Sbjct: 6   RIWFAAVAFSGIALSGAAANP---SIAVDVATGKV--YEQQDAFQRWYPASLTKMMTAYV 60

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            F  LQS ++ L + + ++  A+ + PSK+  K  +  T +  +  ++ +SANDVS A  
Sbjct: 61  TFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVA 120

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E + G+E  F   M+ +A+++GM  + + N +GLHD N  TTARD A+L + LR+ FPQY
Sbjct: 121 EAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRREFPQY 180

Query: 209 YKYFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
             YF+          ++  N+N LL +    DG+KTG+   SGFN+  S       ++A+
Sbjct: 181 AHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRTLLAI 240

Query: 267 VMGMPTSQERDQKALELITSFLEKKT 292
           V+G    + R  +A +++T     ++
Sbjct: 241 VLGADRQETRAIQAAQMMTDAFRARS 266


>gi|299132249|ref|ZP_07025444.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2]
 gi|298592386|gb|EFI52586.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2]
          Length = 475

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 142/253 (56%), Gaps = 5/253 (1%)

Query: 37  LSIIMISMASELHAK--PKYSS--IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFE 91
           + +I I+ A  LHA   P ++   ++ID N  + +      +P YPASLTK+MT Y+   
Sbjct: 1   MWLIAIAAAFSLHASATPAHAEAYLLIDANSGKVLQAENATQPWYPASLTKIMTAYVTLT 60

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            ++  ++ L+T + VS  A  Q PSK+     T  T +  +  ++ +SAND++    E +
Sbjct: 61  AVKQGRISLDTLLTVSPNAVAQAPSKMGFPAGTTVTVDNALKMMMVKSANDMAVVLAEGV 120

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            GS + FA +M+  A+++GM  + + N +GL D   I++ARD  IL     ++ P+Y  +
Sbjct: 121 GGSIEGFAGMMNETARQLGMTQSHFVNPNGLPDDAHISSARDIGILARAFYRDLPEYEYF 180

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
             +   ++  R+  N NKL+ +    DG+KTG+   SGFN+V S    D  ++AVV+G P
Sbjct: 181 AHLPGIKFGRRVTMNFNKLIGRYPGADGMKTGFICASGFNLVASATRNDKHLIAVVLGAP 240

Query: 272 TSQERDQKALELI 284
           +S +R  KA +L+
Sbjct: 241 SSAQRTIKAAQLL 253


>gi|119384494|ref|YP_915550.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paracoccus denitrificans
           PD1222]
 gi|119374261|gb|ABL69854.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paracoccus denitrificans
           PD1222]
          Length = 568

 Score =  159 bits (402), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 87/216 (40%), Positives = 126/216 (58%), Gaps = 1/216 (0%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           +PASLTKMMTLY+ F  ++  ++ L+++  VS  AA Q PS+L LK          I A 
Sbjct: 64  HPASLTKMMTLYMAFNAIERGQVRLDSKFLVSSHAAAQPPSRLGLKPGQRIELRYLIRAA 123

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
             +SAND +T  GE ++GSE KFA  M+  A+ +GM+NT ++NA+GL  +   +TARD  
Sbjct: 124 AVKSANDAATVIGEGLAGSEAKFAAQMTQMARALGMRNTNFRNANGLTAEGHYSTARDMT 183

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK-LLNKMHNIDGIKTGYTRNSGFNIVT 254
           +LG  L  +FPQYY  FS R        + + NK  L+     DGIKTGYTR +GFN+  
Sbjct: 184 VLGRRLFYDFPQYYSIFSRRSADAGIATVASTNKRFLDSYEGADGIKTGYTRAAGFNLTA 243

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           S +     I+A V+G  ++  R+Q   +L+ +   K
Sbjct: 244 SAKRGSKRIIATVLGGTSTAHRNQVMAQLLDAGFGK 279


>gi|254438085|ref|ZP_05051579.1| D-alanyl-D-alanine carboxypeptidase family [Octadecabacter
           antarcticus 307]
 gi|198253531|gb|EDY77845.1| D-alanyl-D-alanine carboxypeptidase family [Octadecabacter
           antarcticus 307]
          Length = 471

 Score =  159 bits (401), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 92/266 (34%), Positives = 148/266 (55%), Gaps = 5/266 (1%)

Query: 24  IQRNIQ---LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           ++R IQ   L G +L  +++M ++A        Y+++V+D    ++   +  D   +PAS
Sbjct: 1   MKRRIQHPALAGILLLFTLLMAALAPVTGNSAPYAAMVMDARTGEILHSRNADTQLHPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LTKMMTLYI F+ ++  ++ L+  I ++  AA++  SKL+L           I A   +S
Sbjct: 61  LTKMMTLYIAFQAVERGEISLDDMITITPLAASEPASKLWLAAGQRIQFRYLIRASGVKS 120

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AND +TA G  + G+E  FA  M+  A+ +GM  T ++NA GL +   ++TARD  +LG 
Sbjct: 121 ANDAATAIGIALEGNEAAFARRMTATARAMGMSRTTFRNAHGLTETGHMSTARDMTVLGR 180

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
            +  +FPQYY  FS          ++N N + LN     DGIKTGYTR +GFN+V S   
Sbjct: 181 HMIYDFPQYYNIFSRLTTDAGVSQVSNTNRRFLNAYRGADGIKTGYTRAAGFNLVASAER 240

Query: 259 KDDPIVAVVMGMPTSQERDQKALELI 284
             + I+A + G  ++ +R+ +  EL+
Sbjct: 241 GQERIIATMFGGTSTAQRNARVAELL 266


>gi|300021591|ref|YP_003754202.1| serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299523412|gb|ADJ21881.1| Serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 360

 Score =  159 bits (401), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 82/213 (38%), Positives = 121/213 (56%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D+  YPASLTK+ T Y+ F+ ++  KL L  +IP S  A  Q PSK  L      T EQ 
Sbjct: 44  DDVWYPASLTKLTTAYLAFQAIKDGKLRLTDKIPCSLVATLQPPSKAGLNVGDTLTVEQA 103

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + A+I +SANDV+    E ISGSE  F   M+  A+++GM  T + N +GL    Q+T+A
Sbjct: 104 LQAVIVKSANDVTVMLAEAISGSETNFIEQMNATAQRLGMTRTHFDNTNGLPSPGQLTSA 163

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           RD A +   +  +FP+Y  Y+S+   R   R + +HN LL      DG+KTG+T +SG+N
Sbjct: 164 RDLARIARAIVTDFPEYASYWSMPAMRIGKRRLGSHNALLKTFPGADGMKTGFTCDSGYN 223

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +  S       +VA+V+G  +  ER  ++  L+
Sbjct: 224 VAASATRDGRRLVAIVLGESSGNERAVRSAALL 256


>gi|27376431|ref|NP_767960.1| penicillin-binding protein [Bradyrhizobium japonicum USDA 110]
 gi|27349571|dbj|BAC46585.1| bll1320 [Bradyrhizobium japonicum USDA 110]
          Length = 487

 Score =  159 bits (401), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 124/211 (58%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           P YPAS+TK+MT Y+  + ++  +L L+T + VS TAA+Q+PSK+  +  T  T +  + 
Sbjct: 55  PWYPASVTKIMTAYVTLKAVKDGRLTLDTLLTVSPTAASQSPSKMGFRPGTQLTVDNALK 114

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            ++ +SAND++    E + GS   F+++M++ AKK+GM  T Y N +GL    QIT+ARD
Sbjct: 115 MMMVKSANDMAVVLAEGVGGSIDGFSVMMNDTAKKLGMTQTSYVNPNGLPADGQITSARD 174

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
             IL     ++ P+Y  +  I   R+  R+  N NKL+ +    DG KTG+   SG+N+V
Sbjct: 175 LGILARSFLRDLPEYEYFVHIPAIRFGKRVTGNFNKLIGRYPGADGFKTGFICASGYNLV 234

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            S       ++AVV+G  +   R  KA +L+
Sbjct: 235 ASATRNGRRLIAVVLGANSGTARAVKAAQLL 265


>gi|327188719|gb|EGE55918.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli
           CNPAF512]
          Length = 366

 Score =  158 bits (400), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 76/194 (39%), Positives = 121/194 (62%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPASLTK+MT+Y +F+ +++ ++ L+T I +SK AA Q  +K+Y K     T +  +  L
Sbjct: 47  YPASLTKLMTVYTVFDAIRAGQISLDTPIVMSKRAAAQPAAKMYFKPGQKLTLDSALKIL 106

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + +SAND++ A  E + G+++ F   M+ +A K+GM ++ + N +GL  K Q TTARD A
Sbjct: 107 MVKSANDIAVAVAEAVGGTQEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLA 166

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           +L + LR++FPQY  YFS+  F    + + N N L+ +    DG+KTG+   SGFN + S
Sbjct: 167 VLTVALRRDFPQYAGYFSLEGFTTGQQNVPNLNMLIGRFAGADGMKTGFICASGFNQIGS 226

Query: 256 LRYKDDPIVAVVMG 269
                  +V+VV+G
Sbjct: 227 ATRNGRTLVSVVLG 240


>gi|86359415|ref|YP_471307.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42]
 gi|86283517|gb|ABC92580.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42]
          Length = 360

 Score =  158 bits (400), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 77/209 (36%), Positives = 125/209 (59%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPASLTK+MT+Y +F+ +++ ++ L+T I +SK AA Q  +K+Y K     T +  +  L
Sbjct: 41  YPASLTKLMTVYTVFDAIRAGQISLDTPIVISKRAAAQPAAKMYFKPGQKLTLDSALKIL 100

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + +SAND++ A  E + G+++ F   M+ +A K+GM ++ + N +GL  K Q TTARD A
Sbjct: 101 MVKSANDIAVAVAEAVGGTQEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLA 160

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           +L + LR++FPQY  YF++  F    + + N N L+ +    DG+KTG+   SGFN + S
Sbjct: 161 VLTVALRRDFPQYASYFALEGFTTGQQNVPNLNMLIGRFAGADGMKTGFICASGFNQIGS 220

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELI 284
                  +V+VV+G  +   R      L+
Sbjct: 221 ATRNGRTLVSVVLGTDSLAARADATANLL 249


>gi|190893669|ref|YP_001980211.1| D-alanyl-D-alanine carboxypeptidase [Rhizobium etli CIAT 652]
 gi|190698948|gb|ACE93033.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CIAT
           652]
          Length = 366

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 76/194 (39%), Positives = 121/194 (62%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPASLTK+MT+Y +F+ +++ ++ L+T I +SK AA Q  +K+Y K     T +  +  L
Sbjct: 47  YPASLTKLMTVYTVFDAIRAGQISLDTPIVMSKRAAAQPAAKMYFKPGQKLTLDSALKIL 106

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + +SAND++ A  E + G+++ F   M+ +A K+GM ++ + N +GL  K Q TTARD A
Sbjct: 107 MVKSANDIAVAVAEAVGGTQEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLA 166

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           +L + LR++FPQY  YFS+  F    + + N N L+ +    DG+KTG+   SGFN + S
Sbjct: 167 VLTVALRRDFPQYAGYFSLEGFTNGQQNVPNLNMLIGRFAGADGMKTGFICASGFNQIGS 226

Query: 256 LRYKDDPIVAVVMG 269
                  +V+VV+G
Sbjct: 227 ATRNGRTLVSVVLG 240


>gi|163844056|ref|YP_001628460.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445]
 gi|163674779|gb|ABY38890.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445]
          Length = 370

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/266 (33%), Positives = 147/266 (55%), Gaps = 11/266 (4%)

Query: 33  KILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYI 88
           +I F ++    +A S   A P   SI +DV   ++  ++Q +     YPASLTKMMT Y+
Sbjct: 6   RIWFAAVAFSGIALSGAAANP---SIAVDVATGKV--YEQQDAFQRWYPASLTKMMTAYV 60

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            F  LQS ++ L + + ++  A+ + PSK+  K  +  T +  +  ++ +SANDVS A  
Sbjct: 61  TFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVA 120

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E + G+E  F   M+ +A+++GM  + + N +GLHD N  TTARD A+L + LR+ FPQ+
Sbjct: 121 EAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRREFPQH 180

Query: 209 YKYFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
             YF+          ++  N+N LL +    DG+KTG+   SGFN+  S       ++A+
Sbjct: 181 AHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRTVLAI 240

Query: 267 VMGMPTSQERDQKALELITSFLEKKT 292
           V+G    + R  +A +++T     ++
Sbjct: 241 VLGADRQETRAIQAAQMMTDAFRARS 266


>gi|240851366|ref|YP_002972769.1| penicillin-binding protein [Bartonella grahamii as4aup]
 gi|240268489|gb|ACS52077.1| penicillin-binding protein [Bartonella grahamii as4aup]
          Length = 363

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 94/260 (36%), Positives = 146/260 (56%), Gaps = 7/260 (2%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL 93
           LF S+I+   ++   A+P    I +DV    +    Q  E  YPASLTK+MT Y+IF  +
Sbjct: 8   LFFSVILSLFSAIALAQP---FISVDVTTGHILKHNQAFERWYPASLTKLMTAYVIFRAM 64

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
              ++  N  I +S+ AA     +   K  +  T +  +   + +S ND++ A  E ++G
Sbjct: 65  SRGEISPNKHITISEYAAKAPSYRSGYKAGSVLTLDTALSITMVKSTNDLAIAMSEAVAG 124

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+K F   M+++AK++GM  T + NASGL D    +TARD A+L + +R+ FPQY  YFS
Sbjct: 125 SQKNFVRKMNSEAKRLGMFGTHFANASGLPDPQNYSTARDIALLAVQIRREFPQYAHYFS 184

Query: 214 IRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           I    + N  +I  N N L+ + + IDG+KTG+   SGFN+V S       I+ V++G  
Sbjct: 185 IPAIDFGNNRKIQHNSNNLIGRFYGIDGMKTGFICASGFNLVASATRNKRTIITVILGAN 244

Query: 272 TSQERDQKALELI-TSFLEK 290
              ER++KA +L+ T FL +
Sbjct: 245 NITEREEKAAQLLETGFLHQ 264


>gi|225626417|ref|ZP_03784456.1| cobalamin synthesis protein P47K [Brucella ceti str. Cudo]
 gi|260169446|ref|ZP_05756257.1| cobalamin synthesis protein P47K [Brucella sp. F5/99]
 gi|225618074|gb|EEH15117.1| cobalamin synthesis protein P47K [Brucella ceti str. Cudo]
          Length = 635

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/266 (32%), Positives = 142/266 (53%), Gaps = 11/266 (4%)

Query: 33  KILFLSIIMISMASELHAKPKYSSIVIDVNKN----QMTGFKQDEPRYPASLTKMMTLYI 88
           +I F ++    +A  L       SI +DV       Q   F++    YPASLTKMMT Y+
Sbjct: 7   RIWFAAVAFSGIA--LSGAAANPSIAVDVATGKVYEQQDAFQR---WYPASLTKMMTAYV 61

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            F  LQS ++ L + + ++  A+ + PSK+  K  +  T +  +  ++ +SANDVS A  
Sbjct: 62  TFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVA 121

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E + G+E  F   M+ +A+++GM  + + N +GLHD N  TTARD A+  + LR+ FPQY
Sbjct: 122 EAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVFAVQLRREFPQY 181

Query: 209 YKYFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
             YF+          ++  N+N LL +    DG+KTG+   SGFN+  S       ++A+
Sbjct: 182 AHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRTVLAI 241

Query: 267 VMGMPTSQERDQKALELITSFLEKKT 292
           V+G    + R  +A +++T     ++
Sbjct: 242 VLGADRQETRAIQAAQMMTDAFRARS 267


>gi|118591400|ref|ZP_01548798.1| Serine-type D-Ala-D-Ala carboxypeptidase [Stappia aggregata IAM
           12614]
 gi|118436072|gb|EAV42715.1| Serine-type D-Ala-D-Ala carboxypeptidase [Stappia aggregata IAM
           12614]
          Length = 457

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 78/217 (35%), Positives = 130/217 (59%), Gaps = 1/217 (0%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPASLTK+MT Y+ F+ ++  +  L++ +  SK +A + PSK+  K  T FT +  +  +
Sbjct: 36  YPASLTKLMTAYVTFKAIREGRASLDSAVVQSKNSAAEPPSKMGFKVGTRFTVDTALKII 95

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + +SANDV+ A GE I GSE  F  +M+ +A+++GM NT + N  GL D  Q+TTARD A
Sbjct: 96  LIKSANDVAVALGEAIGGSEAGFIAMMNVEAQRLGMTNTRFYNPHGLPDNRQVTTARDLA 155

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK-LLNKMHNIDGIKTGYTRNSGFNIVT 254
           IL + LR++FP+   ++     R+  + + + N+  L ++   +G+KTGY  NSG+N+  
Sbjct: 156 ILALALRRDFPEARNFYDHPGIRFGKKTLRSANREFLLRVPGANGMKTGYICNSGYNVAA 215

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
           S    +  ++A+++G  +  ER   A +L      K+
Sbjct: 216 SATRGNKTLIAIILGAGSGLERTAFARQLFDEGFRKR 252


>gi|114775714|ref|ZP_01451282.1| hypothetical protein SPV1_05278 [Mariprofundus ferrooxydans PV-1]
 gi|114553825|gb|EAU56206.1| hypothetical protein SPV1_05278 [Mariprofundus ferrooxydans PV-1]
          Length = 334

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/251 (36%), Positives = 134/251 (53%), Gaps = 7/251 (2%)

Query: 41  MISMASELHAKPKYSSI------VIDVNKNQM-TGFKQDEPRYPASLTKMMTLYIIFEYL 93
           M+ +A    A P+   +      +ID    Q+      DE   PASLTKMMTLY+ FE L
Sbjct: 22  MMPLAVHAAAWPESPRLDAKAWAMIDARSGQIIASHNADEQLPPASLTKMMTLYLAFEAL 81

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           +  +L L+T + VS+ A     S ++L  + + T  Q I  + T S ND   A  E + G
Sbjct: 82  KQGRLSLDTPVSVSQKAWKIGGSTMFLDPRMHPTVGQLIHGIATYSGNDACIALAEHMEG 141

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           SE  FA  M+ KA+++GM ++ + NA+G   +   ++A D AILG  L ++FP+ YK F 
Sbjct: 142 SESTFAERMNAKARELGMLHSHFVNATGFPTEGHYSSAGDMAILGAALWRDFPERYKLFD 201

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            R F Y  R   N N+LL  M   DGIKTG+T+ +G+ +V S    +   VA V G  + 
Sbjct: 202 ERDFTYDGRTQPNRNRLLWTMSEADGIKTGHTQEAGYCLVGSAEKANTRFVAAVFGTKSD 261

Query: 274 QERDQKALELI 284
           + R Q+   L+
Sbjct: 262 RARAQETRTLL 272


>gi|150397770|ref|YP_001328237.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae
           WSM419]
 gi|150029285|gb|ABR61402.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae
           WSM419]
          Length = 376

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/256 (33%), Positives = 146/256 (57%), Gaps = 6/256 (2%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYI 88
           MG +     I ++      A P+   +VIDV+  ++    QD  +  YPASLTK+MT YI
Sbjct: 15  MGTLAGACAIFLAAVLPASANPR---LVIDVDTLKVY-EHQDIFQKWYPASLTKLMTAYI 70

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            F  +++ +L L + + ++K AA++ PSK++ K     T +  +  ++ +SANDV+ A  
Sbjct: 71  TFRAIKADQLTLESPVVMTKNAASEPPSKMFYKPGQKMTLDSALKMMLVKSANDVAVAIA 130

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E + G+E+ F   M+ +A++IGM ++ + N  GL  + Q TTARD A+L + L++ FPQY
Sbjct: 131 ETVGGTEQAFIERMNAEARRIGMTSSRFINPHGLPGEGQYTTARDLAVLAVTLKREFPQY 190

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             YF++  F    +   N+N L+ +    DG+KTG+   SGFN V+S       +V+VV+
Sbjct: 191 ASYFALEGFTTGKKDYPNYNMLIGRFEGADGMKTGFICASGFNQVSSAVRSGRRVVSVVL 250

Query: 269 GMPTSQERDQKALELI 284
           G  +   R  ++  L+
Sbjct: 251 GEDSLGARADESARLL 266


>gi|293602524|ref|ZP_06684970.1| D-alanyl-D-alanine carboxypeptidase DacA [Achromobacter piechaudii
           ATCC 43553]
 gi|292819286|gb|EFF78321.1| D-alanyl-D-alanine carboxypeptidase DacA [Achromobacter piechaudii
           ATCC 43553]
          Length = 394

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/240 (35%), Positives = 140/240 (58%), Gaps = 2/240 (0%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           IVIDVN  Q +     D    PASLTK+MT Y++F  L+ K+L L   +PVS+ A     
Sbjct: 53  IVIDVNSGQTLAASNPDMKVEPASLTKIMTAYVVFNALEEKRLTLEQTVPVSEHAWRTGG 112

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S+++++ +   T ++    +I +S ND S A  E + GSE  FA LM+ +A+++GM+NT 
Sbjct: 113 SRMFIEPRKPVTVDELNQGMIVQSGNDASVALAEAVGGSESAFAALMNQEAERLGMKNTH 172

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           + NA+GL D   +T+ RD A L   L  + P ++ Y+  + + Y      N N+LL    
Sbjct: 173 FMNATGLPDPQHVTSTRDLATLSSHLITDHPDFFHYYKQKSYTYNKITQPNRNRLLWADP 232

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT-SFLEKKTLK 294
           ++DG+KTG+T ++G+ +V++    D  I+ VV+G  +   R +++L+L+  SF    T+K
Sbjct: 233 SVDGMKTGHTDSAGYCLVSTAMRGDRRILVVVVGTDSEATRAEESLKLLNWSFQNFDTVK 292


>gi|148559912|ref|YP_001259847.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840]
 gi|148371169|gb|ABQ61148.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840]
          Length = 352

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/242 (34%), Positives = 137/242 (56%), Gaps = 7/242 (2%)

Query: 56  SIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           SI +DV   ++  ++Q +     YPASLTKMMT Y+ F  LQS ++ L + + ++  A+ 
Sbjct: 9   SIAVDVATGKV--YEQQDAFQRWYPASLTKMMTAYVTFRALQSGQMTLESPVRMTVNASK 66

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           + PSK+  K  +  T +  +  ++ +SANDVS A  E + G+E  F   M+ +A+++GM 
Sbjct: 67  EPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVAEAVGGTEAAFVQRMNAEARRLGMF 126

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKL 230
            + + N +GLHD N  TTARD A+L + LR+ FPQY  YF+          ++  N+N L
Sbjct: 127 GSHFANPNGLHDPNNYTTARDLAVLAVQLRREFPQYAHYFATEAIDPGAGKKVEANYNIL 186

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L +    DG+KTG+   SGFN+  S       ++A+V+G    + R  +A +++T     
Sbjct: 187 LGRYDGADGMKTGFVCASGFNLAGSATRNGRTVLAIVLGADRQETRAIQAAQMMTDAFRA 246

Query: 291 KT 292
           ++
Sbjct: 247 RS 248


>gi|239817881|ref|YP_002946791.1| beta-lactamase [Variovorax paradoxus S110]
 gi|239804458|gb|ACS21525.1| Beta-lactamase [Variovorax paradoxus S110]
          Length = 389

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/252 (36%), Positives = 150/252 (59%), Gaps = 18/252 (7%)

Query: 38  SIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
           S+ MI+ A+++ A P+ ++   +++DV  NQ+   K  D P  PASLTK+M+ YI+F+ L
Sbjct: 18  SVGMIA-AAQVPAPPEIAARSYLLLDVTANQILAQKDIDSPVEPASLTKLMSAYIVFDAL 76

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           ++KK+ L   +PVS+ A     S++++  K     E  I  LI +S ND + A  E + G
Sbjct: 77  RAKKITLTQTMPVSQRAWKMPGSRMFIDPKMQVPVEDLIKGLIVQSGNDATVALAEGVGG 136

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           + + F  LM+ +AK +GM+NT YKN  GL      TTARD +IL   L ++FP+  KY++
Sbjct: 137 TVEHFVELMNAQAKALGMKNTSYKNPEGLTAPGHTTTARDLSILATRLVRDFPEEAKYYA 196

Query: 214 IRKFRYRNRII---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP-------I 263
           I+K+RY        TN N LL +   +DG+KTG+T  +G+ ++ + + +D P       +
Sbjct: 197 IKKYRYPGTPSTNDTNRNLLLFRDPTVDGLKTGHTEAAGYCMIATAK-RDFPNLTGGRRL 255

Query: 264 VAVVMGMPTSQE 275
           +++V+G  TS E
Sbjct: 256 LSIVLG--TSGE 265


>gi|254780435|ref|YP_003064848.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040112|gb|ACT56908.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 336

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/267 (35%), Positives = 141/267 (52%), Gaps = 12/267 (4%)

Query: 36  FLSIIMISMAS---------ELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMT 85
           FL II ++M S         E +  P Y+  ++D N   +      D P  PASLTK+MT
Sbjct: 4   FLVIIAMAMLSNIFPFLSIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMT 61

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
            Y++F +L+ KK  L T I +SK A+   PS    K+ +  T +  +  LI +SAND++ 
Sbjct: 62  AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E +  +EKKF   M+N +K +G+  T + NA G+      TTARD AIL   ++ +F
Sbjct: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           PQY  YF I+    + +   N N  +      DG+KTG+T  SGFNIV S    D  ++A
Sbjct: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241

Query: 266 VVMGMPTSQERDQKALELITSFLEKKT 292
           V++G      R++ +  L++     KT
Sbjct: 242 VILGALDRNTRNKVSASLLSMGFYNKT 268


>gi|86748470|ref|YP_484966.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris HaA2]
 gi|86571498|gb|ABD06055.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris HaA2]
          Length = 499

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/258 (32%), Positives = 138/258 (53%), Gaps = 7/258 (2%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           P YPAS+TK+MT Y+  + ++  +L L++ + VS  AA Q+PSK+     T  T +  + 
Sbjct: 55  PWYPASVTKIMTAYVTLKAVKEGRLTLDSLLTVSPVAAAQSPSKMGFAPGTLITVDNALK 114

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            ++ +SAND++    E + GS   F+ +M+  A+++GM  T Y N +GL  + Q+T+ARD
Sbjct: 115 MMMVKSANDIAVVLAEGVGGSVDGFSDMMNTTAQRLGMTQTHYVNPNGLPAEGQVTSARD 174

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            AIL   + ++ P+Y  +  I   R+  R+  N NKL+ +    DG KTG+   SG+N+V
Sbjct: 175 LAILARAVLRDLPEYEHFMHIPAIRFGKRVTHNFNKLIGRYPGADGFKTGFICASGYNLV 234

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKH--QQTHRKDNLS-----S 306
            S       ++AVV+G  + Q+R  KA +L+       TL          DNL+      
Sbjct: 235 ASATRNGRRLIAVVLGANSGQDRAVKAAQLLERGFSANTLAWLTPSLGTVDNLAPIDATP 294

Query: 307 TSLKKSLMIKKLKRTYSQ 324
            +L+  +   K KR  S 
Sbjct: 295 PNLRDEMCGPKRKRPASD 312


>gi|218462487|ref|ZP_03502578.1| probable serine-type D-Ala-D-Ala carboxypeptidase protein
           [Rhizobium etli Kim 5]
          Length = 494

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 94/267 (35%), Positives = 144/267 (53%), Gaps = 37/267 (13%)

Query: 34  ILFLSIIMISMASELHAK-PKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFE 91
           + F  +++ S+ +E  A   KY+ IV+D    N +     D  +YPASLTKMMTLY++FE
Sbjct: 26  VAFTVVLVDSVNAEAEAANSKYAGIVVDAKTGNVLYSENADRLQYPASLTKMMTLYLVFE 85

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            L+  ++ L+T +P S  AA Q P+KL ++     T EQGIL L+T SAND STA GE +
Sbjct: 86  ALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDASTALGEML 145

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIY------KNASGLHDKNQITTARDQAILGILLRKNF 205
             + ++ ++  ++  +    ++  +      ++A    D +    AR    LGI LR++F
Sbjct: 146 --ARQRGSLRPADDCQGTRPRHDAHHLSQRPRSAEHGADDDGARPAR----LGIALRQHF 199

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           PQYY YFS R F                       KTGYTR +GFN+V+S++     IV+
Sbjct: 200 PQYYGYFSTRAF-----------------------KTGYTRAAGFNLVSSVQVDGKSIVS 236

Query: 266 VVMGMPTSQERDQKALELITSFLEKKT 292
           VV+G  +   RD +   LI ++L K +
Sbjct: 237 VVLGGTSGAARDAQMRNLIATYLPKAS 263


>gi|163869341|ref|YP_001610597.1| penicillin-binding protein [Bartonella tribocorum CIP 105476]
 gi|161019044|emb|CAK02602.1| penicillin-binding protein [Bartonella tribocorum CIP 105476]
          Length = 363

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/253 (36%), Positives = 142/253 (56%), Gaps = 6/253 (2%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL 93
           LF S I+ S++S       +  I +DV    +    Q  E  YPASLTK+MT Y+IF  +
Sbjct: 8   LFFSFIL-SLSSTFSLAQPF--ISVDVTTEHILKHNQAFERWYPASLTKLMTAYVIFRAM 64

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
              ++  N  I +S+ AA     +   K  +  T +  +   + +S ND++ A  E I+G
Sbjct: 65  SRGEISPNKPITISEYAAKAPSYRSGYKAGSVLTLDTALSITMVKSTNDLAIAMSEAIAG 124

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+K F   M+++AK++GM  T + NASGL D    +TARD A+L + +R+ FPQY  YFS
Sbjct: 125 SQKDFVRKMNSEAKRLGMFGTHFANASGLPDPQNYSTARDIALLAVQIRREFPQYAHYFS 184

Query: 214 IRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           I    + N  +I  N N L+ + + IDG+KTG+   SGFN+V S       I+AV++G  
Sbjct: 185 IPAIDFGNNRKIQHNSNNLIGRFYGIDGMKTGFICASGFNLVASATRNKRTIIAVILGAN 244

Query: 272 TSQERDQKALELI 284
              ER++KA +L+
Sbjct: 245 NVSEREEKAAQLL 257


>gi|222087386|ref|YP_002545923.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium
           radiobacter K84]
 gi|221724834|gb|ACM27990.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium
           radiobacter K84]
          Length = 388

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 90/269 (33%), Positives = 149/269 (55%), Gaps = 10/269 (3%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSK 96
           S++ +S A    A P    +++D N  ++   ++   + YPASLTK+MT Y+ F  +QS 
Sbjct: 22  SMLFLSTAEVADANPH---VLVDANTGRVLDHQEAFSKWYPASLTKLMTAYVTFRAIQSG 78

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           ++ L+T + +SK A+ Q  +K+Y K     T +  +  ++ +SAND++ A  E I GS++
Sbjct: 79  QVSLDTPVVMSKLASAQPAAKMYFKPGQKMTLDNALKMMLVKSANDLAMAVSETIGGSQQ 138

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F   M+ +A ++GM +T + N +GL  + Q TTARD A+L + LR+ FPQY  YFS+  
Sbjct: 139 GFVARMNAEAARLGMLDTHFINPNGLPGQGQYTTARDLAVLSVALRREFPQYAGYFSLEG 198

Query: 217 FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           F    + + N N L+ +    DG+KTG+   +GFN + S       +++VV+G  +   R
Sbjct: 199 FTNGVKQVPNINMLIGRYDGADGMKTGFICAAGFNQIASATRNGRTLISVVLGTDSLAAR 258

Query: 277 DQKALELITSFLEKKTLKHQQTHRKDNLS 305
              +     +FLEK      Q   KD L+
Sbjct: 259 ADDS----ANFLEKGF--QNQFSGKDTLA 281


>gi|241206582|ref|YP_002977678.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240860472|gb|ACS58139.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 377

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/194 (39%), Positives = 121/194 (62%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPASLTK+MT+Y +F+ +++ ++ L+T I +SK AA Q  +K+Y K     T +  +  L
Sbjct: 58  YPASLTKLMTVYTVFDAIRAGQISLDTPIVMSKRAAAQPAAKMYFKPGQKLTLDSALKIL 117

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + +SAND++ A  E I G+++ F   M+ +A K+GM ++ + N +GL  K Q TTARD A
Sbjct: 118 MVKSANDIAVAVAEAIGGTQEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLA 177

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           +L + LR++FPQY  YFS+  F    + + + N L+ +    DG+KTG+   SGFN + S
Sbjct: 178 VLTVALRRDFPQYAGYFSLEGFTNGQQNVPSLNMLIGRFAGADGMKTGFICASGFNQIGS 237

Query: 256 LRYKDDPIVAVVMG 269
                  +V+VV+G
Sbjct: 238 ATRNGRTLVSVVLG 251


>gi|209551182|ref|YP_002283099.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209536938|gb|ACI56873.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 377

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 140/254 (55%), Gaps = 5/254 (1%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPASLTK+MT+Y +F+ +++ ++ L+T + +SK AA Q  +K+Y K     T +  +  L
Sbjct: 58  YPASLTKLMTVYTVFDAIRAGQISLDTPVVMSKRAAAQPAAKMYFKPGQKLTLDSALKIL 117

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + +SAND++ A  E I G+++ F   M+ +A K+GM ++ + N +GL  K Q TTARD A
Sbjct: 118 MVKSANDIAVAVAEAIGGTQEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLA 177

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           +L + LR++FPQY  YF++  F    + + + N L+ +    DG+KTG+   SGFN + S
Sbjct: 178 VLTVALRRDFPQYASYFALEGFTNGQQNVPSLNMLIGRFAGADGMKTGFICASGFNQIGS 237

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELI-----TSFLEKKTLKHQQTHRKDNLSSTSLK 310
                  IV+VV+G  +   R      L+     T F   +TL   + + +     T + 
Sbjct: 238 ATRNGRTIVSVVLGTDSLAARADATANLLQKGFTTQFPGNETLGSLRPYGQGQDQVTDIS 297

Query: 311 KSLMIKKLKRTYSQ 324
             +   K  +  S+
Sbjct: 298 ADICSAKGAKIRSE 311


>gi|15966442|ref|NP_386795.1| putative penicillin-binding protein [Sinorhizobium meliloti 1021]
 gi|307300521|ref|ZP_07580301.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           BL225C]
 gi|307318386|ref|ZP_07597821.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           AK83]
 gi|15075713|emb|CAC47268.1| Putative penicillin-binding protein [Sinorhizobium meliloti 1021]
 gi|306896068|gb|EFN26819.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           AK83]
 gi|306904687|gb|EFN35271.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           BL225C]
          Length = 360

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 86/247 (34%), Positives = 144/247 (58%), Gaps = 6/247 (2%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFEYLQSKK 97
           + ++ A    A P+   +VIDV+  ++    QD  +  YPASLTK+MT Y  F  +Q+ +
Sbjct: 8   VFLAAALPASANPR---LVIDVDTLKVYE-HQDIFQRWYPASLTKLMTAYTTFRAIQAGQ 63

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           L L + + ++K AA++ PSK++ K     T +  +  ++ +SANDV+ A  E + GSE+ 
Sbjct: 64  LTLQSPVVMTKNAASEPPSKMFYKPGQKMTLDSALKMMLIKSANDVAVAIAETVGGSEQA 123

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   M+ +A++IGM ++ + N +GL  + Q TTARD A+L + L++ FPQY  YF++  F
Sbjct: 124 FIEKMNAEARRIGMTSSHFINPNGLPGQGQYTTARDLAVLAVTLKREFPQYASYFALEGF 183

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
               +   N+N L+ +    DG+KTG+   SGFN V+S       +V+VV+G  +   R 
Sbjct: 184 TTGKKDYPNYNMLIGRFDGADGMKTGFICASGFNQVSSASRGGRRVVSVVLGEDSLAARA 243

Query: 278 QKALELI 284
            ++  L+
Sbjct: 244 DESARLL 250


>gi|158422626|ref|YP_001523918.1| serine-type D-Ala-D-Ala carboxypeptidase [Azorhizobium caulinodans
           ORS 571]
 gi|158329515|dbj|BAF87000.1| serine-type D-Ala-D-Ala carboxypeptidase [Azorhizobium caulinodans
           ORS 571]
          Length = 512

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 148/254 (58%), Gaps = 6/254 (2%)

Query: 33  KILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIF 90
           ++L  + ++ +  + ++A P    ++++ +  ++   +QD  +P YPAS+TK+MT+Y+  
Sbjct: 60  RLLSATALLCAAGASVNAAP---VLLVEADTGRVL-EQQDAGKPWYPASVTKLMTVYVAL 115

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             ++  ++  ++ + VS  AA+Q PSK+  K  T  T E  +  L+ +SAND++    E 
Sbjct: 116 NAVKEGRISFDSLLTVSPLAASQQPSKMGFKPGTQLTLENALRMLMVKSANDMAVVIAEG 175

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           + GS   F   M++ A+++GM  T Y N +GL D  QITTARD A+L   L  +FP+   
Sbjct: 176 VGGSMPAFVEEMNDTAERLGMAGTHYNNPNGLPDPGQITTARDLAVLARALIYHFPEQET 235

Query: 211 YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
            F I   R    +  N+N+L+++    DG+KTG+  ++GFN+V +    +  ++AV++G 
Sbjct: 236 LFRIPAMRLGKVVYRNYNRLIDRYPGADGMKTGFICSAGFNLVATATRGNKRLIAVILGA 295

Query: 271 PTSQERDQKALELI 284
           P++  R ++A  L+
Sbjct: 296 PSAVARTEQAAMLL 309


>gi|149909670|ref|ZP_01898322.1| D-alanyl-D-alanine serine-type carboxypeptidase [Moritella sp.
           PE36]
 gi|149807184|gb|EDM67139.1| D-alanyl-D-alanine serine-type carboxypeptidase [Moritella sp.
           PE36]
          Length = 388

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 92/245 (37%), Positives = 147/245 (60%), Gaps = 8/245 (3%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           I+ID +  ++   K  D+   PASLTKMMT Y+I + ++S  ++L+ Q+ +SK A  +N 
Sbjct: 39  ILIDFDSGKVIAEKNADDSLKPASLTKMMTSYVIGQEIRSGNINLDDQVTISKNAWAKNF 98

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++++     T E+    +I +S ND   A  E+I+G+E  FA LM++ +K++GM 
Sbjct: 99  PDSSKMFIEVGKTITVEKLNQGIIVQSGNDACVAMAEYIAGTEGAFAQLMNSWSKQLGMD 158

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
            T + N+ GL  K+Q TTARD A LG  L ++ P+ Y+ +S +KF Y      N N LL 
Sbjct: 159 ATHFANSHGLDSKDQYTTARDMATLGQALIRDVPEEYRIYSQKKFTYNGITQYNRNGLLW 218

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFL 288
           +K  N+DGIKTG+T  +G+N+V+S    +  +VAVV+G  ++  R  ++ +L+     F 
Sbjct: 219 DKSMNVDGIKTGHTSGAGYNLVSSATKDNMRLVAVVLGTKSADARKAESKKLLNFGFRFY 278

Query: 289 EKKTL 293
           E  TL
Sbjct: 279 ETVTL 283


>gi|217968699|ref|YP_002353933.1| beta-lactamase [Thauera sp. MZ1T]
 gi|217506026|gb|ACK53037.1| Beta-lactamase [Thauera sp. MZ1T]
          Length = 375

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 148/254 (58%), Gaps = 4/254 (1%)

Query: 35  LFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIF 90
           + +S+  +S  ++    P  ++    ++D    Q    K  + R  PASLTK+MT YI F
Sbjct: 7   VLVSLFSLSALAQTVPPPALAAKAWALVDHATGQTLAEKDADARIEPASLTKLMTAYITF 66

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             L+   L  +  +PVS  A     S+++++     + ++ I  +I +S ND   A  E 
Sbjct: 67  SKLKEGSLKPDQVVPVSTKAWRMEGSRMFIEPNKPVSVDELIRGVIVQSGNDACVALAET 126

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           I+GSE+ FA LM+ +A+++GM NT + N++GL D    T+ARD A+L   + ++FP+YY 
Sbjct: 127 IAGSEEAFAALMNREAQRLGMTNTHFTNSTGLPDPQLYTSARDLAVLASAIVRDFPEYYG 186

Query: 211 YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
            +S+++F Y      N N+LL    ++DG+KTG+T ++G+ +V++ R  +  +V+VV+G 
Sbjct: 187 LYSLKEFTYNGIKQPNRNRLLYMDPSVDGMKTGHTSSAGYCLVSTARRGERRLVSVVLGA 246

Query: 271 PTSQERDQKALELI 284
            +   R Q++L+L+
Sbjct: 247 ASDSVRAQESLKLL 260


>gi|84685216|ref|ZP_01013115.1| D-alanyl-D-alanine carboxypeptidase family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666948|gb|EAQ13419.1| D-alanyl-D-alanine carboxypeptidase family protein [Rhodobacterales
           bacterium HTCC2654]
          Length = 534

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 129/229 (56%), Gaps = 2/229 (0%)

Query: 58  VIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           V+D    Q+   +  + R +PASLTKMMTLYI+FE ++  ++ L++ + +S+ A+ + PS
Sbjct: 19  VVDARSGQVLHERNADARLHPASLTKMMTLYIVFEAVEHGEISLDSLVTISRNASAEPPS 78

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
           K+  +E +       I A   +SAND +TA GE ISGSE+ FA  M+  AK +GM  T +
Sbjct: 79  KIGFREGSQVRLRHLIRAAAVKSANDAATALGEAISGSEEAFAARMNRTAKALGMTRTHF 138

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN-KLLNKMH 235
           +N  GL  +  ++TARD   LG  L  ++PQYY  FS        + + + N + L    
Sbjct: 139 ENMHGLTAEGHLSTARDMTTLGRHLFYDYPQYYNLFSRTSADVGVKTVPSTNRRFLTTYE 198

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
             DGIKTGYTR SG N+  S    +  I+A + G  +   RD +  EL+
Sbjct: 199 GADGIKTGYTRASGSNLTASAHRGNKRIIATIFGGTSGPSRDAQMAELL 247


>gi|114319338|ref|YP_741021.1| penicillin-binding protein 6 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225732|gb|ABI55531.1| penicillin-binding protein 6 [Alkalilimnicola ehrlichii MLHE-1]
          Length = 381

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 131/221 (59%), Gaps = 1/221 (0%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +++D    Q+      DE R PASL KMMT Y++F  L+   + L+  + VS+ A     
Sbjct: 40  VLMDARSGQVLAENNADEARDPASLVKMMTAYVVFSELREGNIDLDELVTVSERAWRTPG 99

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S+++++          I  +I +S ND   A  E I+G E+ FA +M++ A+++GM+NT 
Sbjct: 100 SRMFIEPGDNVRVGDLIRGVIIQSGNDACVALAEHIAGDEQTFAQVMNSYAEQLGMENTY 159

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           + NA+GL D+   TTARD A+L   + ++FP+YY ++S R F + +   +N N+LL +  
Sbjct: 160 FANATGLPDEAMKTTARDTALLARAIVRDFPEYYGWYSERSFTWNDIRQSNRNRLLWRDS 219

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           ++DG+KTG+T  +G+N+  S   +   +++VV+G  + Q R
Sbjct: 220 SVDGLKTGHTSAAGYNLAASAEREGTRLISVVLGTASEQAR 260


>gi|332716423|ref|YP_004443889.1| penicillin-binding protein [Agrobacterium sp. H13-3]
 gi|325063108|gb|ADY66798.1| penicillin-binding protein [Agrobacterium sp. H13-3]
          Length = 372

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 82/229 (35%), Positives = 132/229 (57%), Gaps = 1/229 (0%)

Query: 57  IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V+DV   ++   ++     YPASLTK+MT YI F  +++ KL   T++ +SK AA Q  
Sbjct: 38  MVVDVKTGKVISHQEAFRKWYPASLTKLMTAYIAFSQMKAGKLSPQTEVVMSKKAADQPA 97

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           SK+Y K     T +  +  L+ +SAND++ A  E I G+   F   M+ +A+++GM +T 
Sbjct: 98  SKMYFKPGQKLTMDSALKLLLIKSANDIAVAIAETIGGTSDNFVAQMNAQAQRLGMSSTR 157

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           Y NA+GL  K Q TTARD A+L +++++ FP+Y  YFS+       +   N N L+ +  
Sbjct: 158 YINANGLPGKGQYTTARDLALLALIIKREFPEYAHYFSLEGVTTGKKDYANFNMLVGRFD 217

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
             DG+KTG+   SGFN V+S       ++ VV+G  +   R  ++ +L+
Sbjct: 218 GADGMKTGFICASGFNQVSSAVRNGRSVITVVLGADSLAGRTDQSADLL 266


>gi|317486130|ref|ZP_07944975.1| D-alanyl-D-alanine carboxypeptidase [Bilophila wadsworthia 3_1_6]
 gi|316922615|gb|EFV43856.1| D-alanyl-D-alanine carboxypeptidase [Bilophila wadsworthia 3_1_6]
          Length = 339

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 139/239 (58%), Gaps = 1/239 (0%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D    ++   +  + R P ASLTK+M++ + F+ ++S K+ L+ QI VS+ AA Q
Sbjct: 57  SAVLMDARTGKILYSQNPDVRIPPASLTKIMSMMVTFDAIRSGKVKLSDQIRVSRHAARQ 116

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S++ L+     +  + ++ +   S ND S A  E + GS + F  +M+NKA++IGM +
Sbjct: 117 GGSRMGLRAGERVSLNRLLMGMAVSSGNDASMAVAERVGGSGRAFVKMMNNKARQIGMSS 176

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           + +K  +GL    Q TTARD A LG +  KN P   +Y  +R  ++R  + TN N LL  
Sbjct: 177 STFKTPNGLPAAGQYTTARDMARLGYVYLKNNPSALQYHRVRVLKHRGAVTTNKNPLLGA 236

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
               DG+KTG+   SG+NI++++R  +  ++AV++G  ++  R  +   L+ +  + +T
Sbjct: 237 CPGADGLKTGWVTASGYNIISTVRRGNTRLIAVILGADSAGLRSHEVRRLVEAGFKSRT 295


>gi|217977547|ref|YP_002361694.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris
           BL2]
 gi|217502923|gb|ACK50332.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris
           BL2]
          Length = 536

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 80/211 (37%), Positives = 122/211 (57%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           +P +PASLTK+MT+Y+  + ++  ++ L+T + VS+ AA   PSK+  +  T  T +  +
Sbjct: 65  QPWFPASLTKLMTVYVALQAVRDHRISLDTPLVVSRRAAAMPPSKMGFRPGTMVTLDTAL 124

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             L+ +SANDVS    E +SGS + FA  M+  A  +GMQ + + N +GL D    ++AR
Sbjct: 125 KILMVKSANDVSVTVAEGVSGSVEAFAAEMNATAAALGMQQSHFVNPNGLPDPQHYSSAR 184

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           D A+L   L   FP++   FSI       R++ NHN LL +   +DG+KTG+T  +GFN+
Sbjct: 185 DLALLARALYVTFPEHADLFSIGALEIGGRVMANHNNLLGRYPGVDGMKTGFTCAAGFNV 244

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           V S       +VAV++G P    R  KA  L
Sbjct: 245 VASATQGGRKLVAVILGAPNVALRTVKAAAL 275


>gi|319796225|ref|YP_004157865.1| beta-lactamase [Variovorax paradoxus EPS]
 gi|315598688|gb|ADU39754.1| Beta-lactamase [Variovorax paradoxus EPS]
          Length = 389

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 88/259 (33%), Positives = 149/259 (57%), Gaps = 15/259 (5%)

Query: 40  IMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQS 95
           + +  A+++ A P+ ++   +++DV  NQ+   K  D P  PASLTK+M+ YI+F+ L++
Sbjct: 19  VGVIAAAQVPAPPEVAARSYLLLDVTANQILAQKDIDSPVEPASLTKLMSAYIVFDALRA 78

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
           KK+ L    PVS  A     S++++  K     E  I  LI +S ND + A  E + G+ 
Sbjct: 79  KKITLTQTFPVSPRAWKMPGSRMFIDPKMQVPVEDLIKGLIVQSGNDATVALAEGVGGTV 138

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           + F  LM+ +AK +GM+NT YKN  GL      TTARD +IL   L ++FP+  KY++I+
Sbjct: 139 EHFVELMNAQAKALGMKNTSYKNPEGLTAPGHTTTARDLSILATRLVRDFPEEAKYYAIK 198

Query: 216 KFRYRNRII---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP-------IVA 265
           K+RY        TN N LL +   +DG+KTG+T  +G+ ++ + + +D P       +++
Sbjct: 199 KYRYPGTPSTNDTNRNLLLFRDPTVDGLKTGHTEAAGYCMIATAK-RDFPNLTGGRRLLS 257

Query: 266 VVMGMPTSQERDQKALELI 284
           +V+G  +   R  ++ +L+
Sbjct: 258 IVLGASSETVRANESQKLL 276


>gi|192293106|ref|YP_001993711.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris TIE-1]
 gi|192286855|gb|ACF03236.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris TIE-1]
          Length = 483

 Score =  155 bits (392), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 165/313 (52%), Gaps = 17/313 (5%)

Query: 36  FLSIIMISMASELHAKPKYSS----IVIDVNKNQMTGFKQDE---PRYPASLTKMMTLYI 88
           FL+I++ ++ S L   P+ ++    ++I+ +  ++   + D    P +PAS+TK+MTLY+
Sbjct: 14  FLTIVVAALLS-LTVLPRVANAEALLLIEADTGKV--LQADNATYPWHPASVTKLMTLYV 70

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
             + ++  +L  +T + VS  A+ Q+PSK+  +  T  T +  +  ++ +SAND++    
Sbjct: 71  TLQAVKQGRLTPDTLLTVSPIASAQSPSKMGFRAGTQVTVDNALKMMMVKSANDMAVVLA 130

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E + GS   F+ +M++ A ++GM  T Y N +GL    Q+T+ARD AIL   + ++ P+Y
Sbjct: 131 EGVGGSIDGFSAMMNDTAARLGMTQTHYVNPNGLPADEQVTSARDLAILARAIIRDLPEY 190

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             Y  I   R+  R+  N NKL+ +    DG KTG+   SG+N+V S       ++AVV+
Sbjct: 191 EYYVHIPAIRFGKRVTRNFNKLIGRYPGADGFKTGFICASGYNLVASATRNGRRLIAVVL 250

Query: 269 GMPTSQERDQKALELITSFLEKKTLKH--QQTHRKDNLSSTS-----LKKSLMIKKLKRT 321
           G  + Q+R  KA +L+       TL          DNL+  +     L+  +   K KR 
Sbjct: 251 GANSGQDRAVKAAQLLERGFSTNTLAWLTPSLGTVDNLAPIAAAPPDLRDEMCGPKRKRP 310

Query: 322 YSQFKKIDAKAHS 334
            S   +  A A S
Sbjct: 311 ASDEDETVANALS 323


>gi|222149991|ref|YP_002550948.1| penicillin-binding protein [Agrobacterium vitis S4]
 gi|221736973|gb|ACM37936.1| penicillin-binding protein [Agrobacterium vitis S4]
          Length = 366

 Score =  155 bits (392), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 82/251 (32%), Positives = 138/251 (54%), Gaps = 10/251 (3%)

Query: 44  MASELHAKPKYSSIVIDVNK----NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           + S + A P    +V+DVN          FK+    YPASLTK+MT Y  F  L++ ++ 
Sbjct: 20  LPSAVAANP---VLVVDVNSLTVLEHQDSFKK---WYPASLTKLMTAYTTFRALRAGEVR 73

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           L++ + +S  AA+Q PSK++ K  +  T +  +  ++ +SAND++ A  E + GS+  F 
Sbjct: 74  LDSVVTLSAFAASQAPSKMFFKPGSKMTLDDALKMMLVKSANDIAVAVAENVGGSQAAFV 133

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             M+ +A ++GM ++ + N +GL    Q +TARD A+L + +R+ FP+Y  YF I     
Sbjct: 134 ARMNAEAARLGMTSSHFVNPNGLPAPGQYSTARDLAVLAVTIRREFPEYAGYFKIEAIDT 193

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
             ++  N N L+ +   +DG+KTGY   SGFN +TS       ++ VVMG  +   R   
Sbjct: 194 GKKVYPNVNMLVGRFDGVDGMKTGYICASGFNQITSATRNGRTLITVVMGADSLAARADI 253

Query: 280 ALELITSFLEK 290
           +  L+  + ++
Sbjct: 254 SANLLQKYFDR 264


>gi|163859128|ref|YP_001633426.1| secreted serine-type D-Ala-D-Ala carboxypeptidase [Bordetella
           petrii DSM 12804]
 gi|163262856|emb|CAP45159.1| secreted serine-type D-Ala-D-Ala carboxypeptidase [Bordetella
           petrii]
          Length = 414

 Score =  155 bits (392), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 133/229 (58%), Gaps = 1/229 (0%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           I ID +  Q +     D    PASLTK+MT Y++F  L+ K++ L  Q+PVS+ A     
Sbjct: 73  ITIDASSGQVLAAANPDMQIEPASLTKIMTAYVVFNALKEKRITLEQQVPVSEHAWRTGG 132

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S+++++ +   T ++ I  +I +S ND S A  E + GSE  FA LM+ +A+++G++ T 
Sbjct: 133 SRMFIEPRKPVTVDELIQGMIVQSGNDASVALAEAVGGSESAFAALMNQEAERLGLKRTH 192

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           + NA+GL D   +TT  D A+L   L  + P YY Y+  ++F Y      N N+LL    
Sbjct: 193 FMNATGLPDPQHVTTVADLAVLSAALINDHPDYYHYYKQKEFTYNKITQPNRNRLLWADP 252

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           ++DG+KTG+T  +G+ +V++    D  ++ V+ G  +   R +++L+L+
Sbjct: 253 SVDGMKTGHTDAAGYCLVSTALRGDRRVLTVLAGADSEATRAEESLKLL 301


>gi|311109424|ref|YP_003982277.1| D-alanyl-D-alanine carboxypeptidase [Achromobacter xylosoxidans A8]
 gi|310764113|gb|ADP19562.1| D-alanyl-D-alanine carboxypeptidase DacC 2 [Achromobacter
           xylosoxidans A8]
          Length = 362

 Score =  155 bits (392), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 85/240 (35%), Positives = 140/240 (58%), Gaps = 2/240 (0%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           IV+DVN  Q +     D    PASLTK+MT Y++F  L  K+L L   +PVS+ A     
Sbjct: 21  IVMDVNSGQTLAASNPDMKVEPASLTKIMTAYVVFNALDEKRLTLEQTVPVSERAWRTGG 80

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S+++++ +   T ++    +I +S ND S A  E + GSE  FA LM+ +A+++GM+NT 
Sbjct: 81  SRMFIEPRKPVTVDELNQGMIVQSGNDASVALAEAVGGSEASFASLMNQEAERLGMRNTH 140

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           + NA+GL D   +T+ RD AIL   L  + P ++ Y+  + + Y      N N+LL    
Sbjct: 141 FMNATGLPDPQHMTSTRDLAILSSHLITDHPDHFHYYKQKSYTYNKITQPNRNRLLWADP 200

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT-SFLEKKTLK 294
           ++DG+KTG+T ++G+ +V++    D  I+ VV+G  +   R +++L+L+  SF    T+K
Sbjct: 201 SVDGMKTGHTDSAGYCLVSTAVRGDRRILVVVVGTDSEATRAEESLKLLNWSFQNFDTVK 260


>gi|39937326|ref|NP_949602.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris CGA009]
 gi|39651184|emb|CAE29707.1| possible D-alanyl-D-alanine carboxypeptidase (penicillin-binding
           protein) [Rhodopseudomonas palustris CGA009]
          Length = 484

 Score =  155 bits (392), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 165/313 (52%), Gaps = 17/313 (5%)

Query: 36  FLSIIMISMASELHAKPKYSS----IVIDVNKNQMTGFKQDE---PRYPASLTKMMTLYI 88
           FL+I++ ++ S L   P+ ++    ++I+ +  ++   + D    P +PAS+TK+MTLY+
Sbjct: 14  FLTIVVAALLS-LTVLPRVANAEALLLIEADTGKV--LQADNATYPWHPASVTKLMTLYV 70

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
             + ++  +L  +T + VS  A+ Q+PSK+  +  T  T +  +  ++ +SAND++    
Sbjct: 71  TLQAVKQGRLTPDTLLTVSPIASAQSPSKMGFRAGTQVTVDNALKMMMVKSANDMAVVLA 130

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E + GS   F+ +M++ A ++GM  T Y N +GL    Q+T+ARD AIL   + ++ P+Y
Sbjct: 131 EGVGGSIDGFSAMMNDTAARLGMTQTHYVNPNGLPADEQVTSARDLAILARAIIRDLPEY 190

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             Y  I   R+  R+  N NKL+ +    DG KTG+   SG+N+V S       ++AVV+
Sbjct: 191 EYYVHIPAIRFGKRVTRNFNKLIGRYPGADGFKTGFICASGYNLVASATRNGRRLIAVVL 250

Query: 269 GMPTSQERDQKALELITSFLEKKTLKH--QQTHRKDNLSSTS-----LKKSLMIKKLKRT 321
           G  + Q+R  KA +L+       TL          DNL+  +     L+  +   K KR 
Sbjct: 251 GANSGQDRAVKAAQLLERGFSTNTLAWLTPSLGTVDNLAPIAAAPPDLRDEMCGPKRKRP 310

Query: 322 YSQFKKIDAKAHS 334
            S   +  A A S
Sbjct: 311 ASDEDETVANALS 323


>gi|319899483|ref|YP_004159580.1| penicillin-binding protein [Bartonella clarridgeiae 73]
 gi|319403451|emb|CBI77022.1| penicillin-binding protein [Bartonella clarridgeiae 73]
          Length = 367

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 146/264 (55%), Gaps = 7/264 (2%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL 93
            FLS I+   +S   A P  S   +D    ++    Q  E  YPASLTK+MT Y+IF  +
Sbjct: 8   FFLSFILSITSSLTLAHPFIS---VDATTGRILKHNQAFERWYPASLTKLMTAYVIFRAM 64

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            + K+  +  I +SK AA         K  +  T +  +   + +S ND++ A  E ISG
Sbjct: 65  STGKISSHKHITISKNAAQAPAINSGYKAGSVLTLDTALKITLVKSTNDLAIAISEAISG 124

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S++ F   M+ +A+++GM  T + N SGL D N  +TARD A+L + +R+ FPQY  YFS
Sbjct: 125 SQEAFVQQMNAEAQRLGMFGTNFTNTSGLPDPNNYSTARDIALLAVQIRREFPQYAHYFS 184

Query: 214 IRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           I    + N  +I  N N L+ +   IDG+KTG+   SGFN+V S       I+AV++G  
Sbjct: 185 IPAIDFGNGKKIQFNSNNLIGRFDGIDGMKTGFICASGFNLVASATRNKRTIIAVILGSD 244

Query: 272 TSQERDQKALELIT-SFLEKKTLK 294
           +  +R++KA +L+   F +K +L+
Sbjct: 245 SVNKREEKAAQLLDEGFSDKGSLQ 268


>gi|258544105|ref|ZP_05704339.1| serine-type D-Ala-D-Ala carboxypeptidase [Cardiobacterium hominis
           ATCC 15826]
 gi|258520658|gb|EEV89517.1| serine-type D-Ala-D-Ala carboxypeptidase [Cardiobacterium hominis
           ATCC 15826]
          Length = 374

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/254 (35%), Positives = 140/254 (55%), Gaps = 4/254 (1%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTK 82
           I R   L+   ++  ++    A EL   P  S I++D    Q + G   DE   PAS+TK
Sbjct: 4   ILRLFTLIIAAVYSGVVFAQAAPEL---PVKSYILMDAASGQTLVGKNADEKLPPASITK 60

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT Y++ E L S KL + T I VS+ A  Q  S+++++       E  +  LI +S ND
Sbjct: 61  LMTAYLVVEALDSGKLTMETPITVSQNAYKQEGSRMFIEVNKQVRVEDLLQGLIVQSGND 120

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E++ GS + F  +M+ KA ++GM++T Y N +GL D    TTARD AIL   + 
Sbjct: 121 AAMALAEYLGGSTEGFTGMMNRKAAELGMKDTHYTNPTGLPDPQHYTTARDIAILSRHII 180

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
            + PQYY Y+  + + Y      N N+LL +  +IDG+KTG+T+ +G+ + +S +  D  
Sbjct: 181 NDHPQYYHYYGQKSYTYNKIKQDNRNRLLWRNASIDGLKTGHTKEAGYCLASSEKRGDIR 240

Query: 263 IVAVVMGMPTSQER 276
            +AVV+G     +R
Sbjct: 241 FIAVVLGADKESDR 254


>gi|149925918|ref|ZP_01914181.1| Serine-type D-Ala-D-Ala carboxypeptidase [Limnobacter sp. MED105]
 gi|149825206|gb|EDM84417.1| Serine-type D-Ala-D-Ala carboxypeptidase [Limnobacter sp. MED105]
          Length = 397

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/274 (32%), Positives = 159/274 (58%), Gaps = 14/274 (5%)

Query: 25  QRNIQLMGKILFLSIIMISMA----SELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRY 76
           +R++  +  +L L I + + A    S +   P+  +   +++D+   Q +  F   E   
Sbjct: 10  KRHVGQLSLVLGLGIGVATQAAAQSSVMPPPPEIGAKGYMLLDLTTGQTLAEFNSRERLD 69

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT Y+ F  L+SK++ ++ Q+PVS  A     S+++++     T E+ +  +I
Sbjct: 70  PASLTKLMTAYMAFAALESKQIRMDQQVPVSPYAWKAEGSRMFIEPNKPVTVEELLYGVI 129

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E ++G E  FA LM+ +AK++G+ +T +KN++GL D    TTARD  I
Sbjct: 130 VQSGNDASRAIAELLAGDENNFATLMNQQAKRLGLTDTNFKNSTGLPDPQHYTTARDLGI 189

Query: 197 LGILLRKNFPQYY-KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           L   +  +FP+YY K +S +++ Y      N N+LL    ++DG+KTG+T ++G+ +V+S
Sbjct: 190 LAKRIITDFPEYYKKMYSTKEYTYNGIRQPNRNRLLWIDPSVDGMKTGHTESAGYCLVSS 249

Query: 256 LRYK-----DDPIVAVVMGMPTSQERDQKALELI 284
                    D  +++VV+G  + Q R Q++L+L+
Sbjct: 250 ANRTLPNGVDRRLLSVVLGTTSDQARTQESLKLM 283


>gi|307823377|ref|ZP_07653606.1| Beta-lactamase [Methylobacter tundripaludum SV96]
 gi|307735362|gb|EFO06210.1| Beta-lactamase [Methylobacter tundripaludum SV96]
          Length = 389

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/200 (37%), Positives = 124/200 (62%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+M++Y++F  + +  LHLN  + +S+ A     S+++++       E  +  +I
Sbjct: 64  PASLTKIMSVYVVFREISNGHLHLNDLVTISQKAWETPGSRMFIEVGNQVKVEDLLKGVI 123

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E I+G E  FA +M+  A+++GM+N+ +++++GL   N  TTARD AI
Sbjct: 124 IQSGNDASVALAEHIAGDETTFADMMNQHAERLGMKNSHFQDSNGLPIDNHYTTARDLAI 183

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   L K FP YY++FS ++F + N +  N N+LL++   +DGIKTG+T  +G+ +V S 
Sbjct: 184 LSQALIKEFPDYYRWFSQKEFTFNNIVQHNRNQLLSRDETVDGIKTGFTDAAGYCLVASA 243

Query: 257 RYKDDPIVAVVMGMPTSQER 276
              D  +++VVMG  +   R
Sbjct: 244 LRNDMRLISVVMGASSPNAR 263


>gi|160895834|ref|YP_001561416.1| serine-type D-Ala-D-Ala carboxypeptidase [Delftia acidovorans
           SPH-1]
 gi|160361418|gb|ABX33031.1| Serine-type D-Ala-D-Ala carboxypeptidase [Delftia acidovorans
           SPH-1]
          Length = 389

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/238 (35%), Positives = 141/238 (59%), Gaps = 11/238 (4%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +++DV  NQ+ G K  D P   ASLTK+MT Y++F+ L++KK+ L  ++PVS+ A     
Sbjct: 40  LLVDVTANQVLGAKDIDAPIEQASLTKLMTGYLVFDALRAKKITLEQRLPVSERAWKMPG 99

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S++++  K     +  I  +I +S ND + A  E + GS + F  LM+ +AK +GM+NT 
Sbjct: 100 SRMFIDPKMQVPVDDLIKGMIVQSGNDATMALAEGVGGSAENFVRLMNEQAKALGMKNTS 159

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII---TNHNKLLN 232
           YKN  GL +   +TTARD +IL   L ++FP+Y  Y+S +K+ Y        TN N LL 
Sbjct: 160 YKNPEGLTEPGHLTTARDLSILAQRLMQDFPEYMHYYSTKKYFYPGTPASNGTNRNSLLF 219

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDP------IVAVVMGMPTSQERDQKALELI 284
           +   +DG+KTG+T  +G+ +V + + +D P      ++++V+G  +   R  ++ +L+
Sbjct: 220 RDPTVDGLKTGHTAAAGYCLVATAK-RDLPNVGSRRLISIVLGAASENARANESQKLL 276


>gi|114705410|ref|ZP_01438318.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506]
 gi|114540195|gb|EAU43315.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506]
          Length = 467

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 139/231 (60%), Gaps = 2/231 (0%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +SIV+D+   + ++     E RYPAS TK+MT Y+  + ++   +  +T + +++ AA +
Sbjct: 66  ASIVVDLETGKVLSQSNATERRYPASTTKLMTAYLAMKAVEVGSMDWDTPVVMTRQAANE 125

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQ 172
            PSKL +   +    ++ + AL+ +SANDV+TA G+ +  GS + F  +M+  A  IGM+
Sbjct: 126 APSKLDIPPGSIMRLDEAVRALLVKSANDVATAVGQTLGHGSSETFVAMMNRTAGLIGMR 185

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           +T + NA GL  + Q ++A+D AIL + +R+ FP+Y  +F      +  +++ N NKLL 
Sbjct: 186 DTQFINAHGLPGEGQHSSAKDLAILAMAIREEFPEYKDWFGTEAIVFNGKLMNNGNKLLG 245

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           +    +G+KTGY    GFN+V+++   +  ++AVV+G   + ER+  + EL
Sbjct: 246 RYDGAEGMKTGYICAGGFNLVSAVTRDNRTLIAVVLGANGTIERETLSAEL 296


>gi|328541732|ref|YP_004301841.1| D-alanyl-D-alanine carboxypeptidase family [polymorphum gilvum
           SL003B-26A1]
 gi|326411484|gb|ADZ68547.1| D-alanyl-D-alanine carboxypeptidase family [Polymorphum gilvum
           SL003B-26A1]
          Length = 458

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/258 (32%), Positives = 142/258 (55%), Gaps = 6/258 (2%)

Query: 33  KILFLSIIMISMASELHAKPKY----SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLY 87
           + L   +++ +  + + A P      S IVID +  Q +  F+     YPASLTKMMT Y
Sbjct: 9   RALSFGVLIAAFLAAVQAPPARADIGSWIVIDADSGQVLDEFQGTRRWYPASLTKMMTAY 68

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           +  + ++  +  L++ +  S+ +  Q PSK+  K  T  T +  +  ++ +SAND++ A 
Sbjct: 69  VTLKAIREGRSSLDSAVTQSQNSLAQPPSKMGFKVGTQMTVDTALKIVMVKSANDIAVAL 128

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
           GE I G+E  F  LM+ +A ++GM++T + N  GL D  Q+++A D AIL   LR++FP+
Sbjct: 129 GEAIGGTEANFVALMNAEAARLGMRDTHFANPHGLPDNRQVSSALDMAILARALRRDFPE 188

Query: 208 YYKYFSIRKFRYRNRIITNHNK-LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
              Y+      +  + + + N+  L ++   DG+KTGY  NSG+N+  S   +   ++AV
Sbjct: 189 ARGYYGHAGLTFGKQTLRSANREFLLRVPGADGMKTGYICNSGYNVAASATRRGRTVIAV 248

Query: 267 VMGMPTSQERDQKALELI 284
           V+G  +  ER   A E I
Sbjct: 249 VLGASSGLERTAFAREAI 266


>gi|146276594|ref|YP_001166753.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145554835|gb|ABP69448.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 473

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/258 (37%), Positives = 141/258 (54%), Gaps = 3/258 (1%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLY 87
           Q + K+LF+   ++  A    A P Y++IV+D    +         R +PASLTKMMTLY
Sbjct: 7   QYVRKMLFVVAAVVVAAQSAVAAP-YAAIVMDARTGETLYETNARTRLHPASLTKMMTLY 65

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           I F+ +Q  ++ L++ + V+K AA + PSKL LK          I A   +SAND +TA 
Sbjct: 66  ITFQAIQRGEISLDSMVTVAKNAAAEPPSKLGLKSGQRIALRYLIRAAAVKSANDAATAI 125

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E + GSE  F   M+  AK IGM N+ +KN  GL  +  ++TA D  +LG  L  +FPQ
Sbjct: 126 CEAVGGSEAAFTERMNRTAKAIGMTNSTFKNCHGLTAEGHLSTAYDMNMLGRRLFFDFPQ 185

Query: 208 YYKYFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           YY  FS R        ++N N + L+     DGIKTGYT  +G+N+  S +  +  I+A 
Sbjct: 186 YYNIFSRRTADAGVTTVSNTNRRFLDAYKGADGIKTGYTSPAGYNLTGSAQRGNKRIIAT 245

Query: 267 VMGMPTSQERDQKALELI 284
           V G  ++  R+ K  EL+
Sbjct: 246 VFGGKSTAHRNAKMAELL 263


>gi|154245869|ref|YP_001416827.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter
           autotrophicus Py2]
 gi|154159954|gb|ABS67170.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter
           autotrophicus Py2]
          Length = 508

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 142/249 (57%), Gaps = 3/249 (1%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE---PRYPASLTKMMTLYIIFE 91
           L  +++ + +A      P  ++ V+ V  +     +Q E   P +PAS+TK+MT+Y+   
Sbjct: 26  LAAAVLGVGLAGSFLVHPAQANPVLLVEADTGRVIEQKEAGRPWHPASVTKLMTVYVALN 85

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            +++ +L L+T + VS  AA+Q PSK+  K  T  T +  +  ++ +SAND++   GE +
Sbjct: 86  AVKNGRLTLDTPLTVSAAAASQQPSKMGFKPGTVVTLDNAMKMVLVKSANDMAWVVGEGV 145

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GS   F   M+  A  +GM  T ++N +GL D +QITTARD AIL   +  +FP++   
Sbjct: 146 AGSMPAFVAEMNATAAHLGMSGTHFENPNGLPDPDQITTARDLAILARAIIYHFPEHEAL 205

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           F I   +    ++ N+N+L+++    DG+KTG+   SG+N+V +    +  ++AV++G  
Sbjct: 206 FRIPAIKIGKAVLRNYNRLIDRYPGADGMKTGFVCGSGYNLVATATRGNKRLIAVILGAR 265

Query: 272 TSQERDQKA 280
           +   R ++A
Sbjct: 266 SGTARTEQA 274


>gi|149201815|ref|ZP_01878789.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius sp. TM1035]
 gi|149144863|gb|EDM32892.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius sp. TM1035]
          Length = 387

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 148/269 (55%), Gaps = 13/269 (4%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYL 93
           L L + + + A E  AK  Y   V+DV    +   K  D P  PAS++K+MTLY+ FE +
Sbjct: 12  LCLGVALPAQAFETSAKAAY---VMDVTTGTVLLDKNADTPMPPASMSKLMTLYVAFEAV 68

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS- 152
           +S +L L+ ++PVS+ A +   S ++L        E  +  +I  S ND      E +S 
Sbjct: 69  RSGRLTLDERLPVSQHAMSYGGSTMFLDTTDRVRVEDLLRGIIVLSGNDACAVIAEALSP 128

Query: 153 -GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            G+E  FA  M+ +A+++GM N+I++NASG   +  + + RD A+L   + ++FP++Y  
Sbjct: 129 DGTEAGFARFMTQRAQQMGMTNSIFRNASGWPAEGHVMSMRDLALLARHIIEDFPEFYPM 188

Query: 212 FSIRKFRYRNRI---ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           F+  +FR+  R    I+N N LL      DG+KTG+T  +GF +  S +  +  +V V+ 
Sbjct: 189 FAETEFRFDGRAPSNISNRNPLLGLGIGADGLKTGHTEQAGFGLTGSAKQGERRVVFVIS 248

Query: 269 GMPTSQERDQKALELIT----SFLEKKTL 293
           G+ T+Q+R +++  ++      F EK  L
Sbjct: 249 GLATAQDRARESESIVNWAFRQFAEKSVL 277


>gi|153873396|ref|ZP_02001993.1| D-alanyl-D-alanine carboxypeptidase [Beggiatoa sp. PS]
 gi|152070138|gb|EDN68007.1| D-alanyl-D-alanine carboxypeptidase [Beggiatoa sp. PS]
          Length = 393

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 80/214 (37%), Positives = 128/214 (59%), Gaps = 5/214 (2%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE 129
           K DE   PASLTK+MT Y++F+ L+  K+ L   + +S+ A     S++YL   T+   +
Sbjct: 51  KADERLEPASLTKLMTAYLVFQKLKIGKIKLTDPVKISQKAWKMGGSRMYLDPGTFVPVD 110

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
             +  +I +S ND S A  E I G+E+ FA LM+ +A+++G++NT Y N++GL D+   +
Sbjct: 111 LLLKGMIIQSGNDASVALAELIGGTEQAFATLMNEQAQRLGLKNTHYVNSTGLPDEQHYS 170

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-----KMHNIDGIKTGY 244
           TARD A +   L  +FP YY+++S  +F Y N   TN N+LL      K   +DG+KTGY
Sbjct: 171 TARDSATIAQALIYDFPSYYRWYSGSEFTYNNITQTNRNRLLRRKPPLKGMKVDGMKTGY 230

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           T  +G+ +V S   K+  +++VV+G    + R +
Sbjct: 231 TDAAGYCLVASAIRKNMRLISVVLGTKNEKARTE 264


>gi|114330774|ref|YP_746996.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrosomonas eutropha
           C91]
 gi|114307788|gb|ABI59031.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Nitrosomonas eutropha C91]
          Length = 380

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 86/257 (33%), Positives = 143/257 (55%), Gaps = 7/257 (2%)

Query: 34  ILFLSIIM-----ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLY 87
           ILFL ++M      S   EL    K S  + D +  Q         R  PASLTK+MT Y
Sbjct: 12  ILFLFLLMPVFPAWSQQPELSIAAK-SFTLTDFHSGQTLASSNPHERLDPASLTKLMTAY 70

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           ++F  L+ +++ L+  +PVSK A     S+++++     T ++ I  +I +S ND   A 
Sbjct: 71  VVFSALKQERIKLDQVVPVSKKAWRMAGSRMFIEPNKPVTVDELIHGVIVQSGNDACVAL 130

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E I+GSE     +M+ +AK++GM NT + N++GL   +  +TA D A+L   + ++FP+
Sbjct: 131 AELIAGSEDLLVHMMNEEAKRLGMHNTHFTNSTGLTHPDHYSTANDLALLAGAIIRDFPE 190

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           YY  +S+R++ Y      N N+LL    N+DG+KTG+T  +G+ +VTS +     +++VV
Sbjct: 191 YYPLYSLREYTYNGITQQNRNRLLWTDPNVDGMKTGWTEAAGYCLVTSAKRDHRRLISVV 250

Query: 268 MGMPTSQERDQKALELI 284
           MG  +   R  ++  L+
Sbjct: 251 MGTASPNARSIESQRLL 267


>gi|34498549|ref|NP_902764.1| D-ala-D-ala-carboxypeptidase [Chromobacterium violaceum ATCC 12472]
 gi|34104404|gb|AAQ60762.1| D-ala-D-ala-carboxypeptidase [Chromobacterium violaceum ATCC 12472]
          Length = 381

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 85/250 (34%), Positives = 139/250 (55%), Gaps = 4/250 (1%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
           F +   +    E+  K  Y   ++D N  Q+   +  + R  PASLTK+MT Y+ F+ L+
Sbjct: 20  FANTAFVPPTPEIAGKAYY---LLDYNSQQVLAARDPDARIEPASLTKLMTAYLTFKALK 76

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
            K+L L   + VS+       S+++L  K     +  I  +I +S ND      E I+GS
Sbjct: 77  EKRLSLEQTLTVSQRGWKTEGSRMFLDPKVPAKVDDLIKGMIVQSGNDACVTLAEAIAGS 136

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           E  F  LM+ +A K+GM+NT +KNA+GL  +   TT  D  IL   L +++P++Y  +S+
Sbjct: 137 EDVFGQLMTQQALKLGMKNTQFKNATGLPHEGHYTTVHDLGILAAALIRDYPEFYPIYSM 196

Query: 215 RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           + F Y N    N N LL +  N+DG+KTGYT ++G+N+VTS       +++VV+G  + +
Sbjct: 197 KSFTYNNIKQPNRNLLLYRDPNVDGMKTGYTDSAGYNMVTSSHRDGRRVISVVVGTASPE 256

Query: 275 ERDQKALELI 284
            R  ++ +L+
Sbjct: 257 ARAVESSKLL 266


>gi|91786161|ref|YP_547113.1| penicillin-binding protein 6 [Polaromonas sp. JS666]
 gi|91695386|gb|ABE42215.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Polaromonas sp. JS666]
          Length = 400

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 88/256 (34%), Positives = 143/256 (55%), Gaps = 20/256 (7%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A E+ A+   S +++DV  NQ+   K  D P  PASLTK+MT Y++F+ L+SKK+ L   
Sbjct: 34  APEIAAR---SYLLLDVTANQILAAKDIDSPVEPASLTKLMTEYLVFDALKSKKIDLKQT 90

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
             VS+ A     S++++  K     E  I  ++ +S ND + A  E + G+ + F  LM+
Sbjct: 91  FGVSERAWKMPGSRMFIDPKMQVPVEDLIKGMVVQSGNDATMALAEGVGGTAEHFVRLMN 150

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI 223
            +AK +GM++T YKN  GL +    TTARD +IL   L ++FP Y  Y +I+K+RY    
Sbjct: 151 EQAKALGMKSTAYKNPEGLTEPGHTTTARDLSILATRLMRDFPDYIGYSAIKKYRYPGTP 210

Query: 224 I---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP------------IVAVVM 268
               TN N LL +   +DG+KTG+T  +G+ ++ + R +D P            ++A+V+
Sbjct: 211 AANDTNRNTLLFRDPTVDGLKTGHTEAAGYCMIATAR-RDFPNLGVGGAPGGRRLLAIVL 269

Query: 269 GMPTSQERDQKALELI 284
           G  +   R  ++ +L+
Sbjct: 270 GTSSDSARANESQKLL 285


>gi|288962599|ref|YP_003452893.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510]
 gi|288914865|dbj|BAI76349.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510]
          Length = 451

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 79/208 (37%), Positives = 119/208 (57%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           P+S+TKMMT Y+ ++ L   +  L+T  P+S+TA     S+++LK  +    E  +  L+
Sbjct: 131 PSSMTKMMTAYLTYDALVHGRTTLDTSFPISQTAWKMGGSRMFLKLGSTVRVEDLLRGLL 190

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A  E ++GSE  FA LM+ KA+++GM ++ + NASG  D    TTARD AI
Sbjct: 191 IDSGNDAAVALAEGLAGSESAFAGLMNAKARELGMADSHFMNASGWPDPGHYTTARDLAI 250

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   L ++FPQ+Y Y S R F +      N N LL    ++DGIKTG+T   G+ +  S 
Sbjct: 251 LATRLIRDFPQFYHYESERNFTWNGIRQGNRNPLLYHPVSVDGIKTGHTEVGGYGLTASG 310

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELI 284
                 +V VV G+P+ Q R+ +   L+
Sbjct: 311 ERNGRRLVLVVNGLPSPQSRNDEPTRLL 338


>gi|288958656|ref|YP_003448997.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510]
 gi|288910964|dbj|BAI72453.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510]
          Length = 396

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 148/266 (55%), Gaps = 3/266 (1%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ--DEPRYPA 78
           S+ +   I + G  +      + + +         +I++D+  N +  F++  DE   P+
Sbjct: 15  SVAVAAGIAMAGATIGAGFTAVPVQAATIDTIAKQAILVDLTSNTVL-FEKNADERMAPS 73

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           S++K+MT Y++FE +++ +L L + +PVS+ A     SK++++       +  +  +I +
Sbjct: 74  SMSKIMTAYMVFEAIKAGRLTLESTLPVSERAWRMQGSKMFVELHNNIKVDDLLKGMIVQ 133

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND      E ++GSE+ FA   + +AK++G++++ + NA+G  D N   TARD AIL 
Sbjct: 134 SGNDACIVLAEGLAGSEQSFAEQATKRAKELGLKSSNFVNATGWPDPNHYMTARDLAILA 193

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             L K+FP++YKY SIR+F+Y      N N LL +  N+DG+KTG+T   G+ +  S   
Sbjct: 194 ERLIKDFPEFYKYDSIREFKYHGITQGNRNPLLYRNMNVDGLKTGHTDAGGYGLTASGER 253

Query: 259 KDDPIVAVVMGMPTSQERDQKALELI 284
               ++ VV G+P+ Q R  ++  LI
Sbjct: 254 DGRRLLLVVNGLPSMQARADESARLI 279


>gi|91975804|ref|YP_568463.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisB5]
 gi|91682260|gb|ABE38562.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisB5]
          Length = 492

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 87/259 (33%), Positives = 140/259 (54%), Gaps = 9/259 (3%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           P YPAS+TK+MT Y+  + ++  +L L++ + VS  AA Q+PSK+  +  T  T +  + 
Sbjct: 55  PWYPASVTKIMTAYVTLKAVKEGRLTLDSLLTVSPVAAAQSPSKMGFRPGTQITVDNALK 114

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            ++ +SAND++    E + GS   F+  M+  A+++GM  T Y N +GL    Q+T+ARD
Sbjct: 115 MMMVKSANDMAVVLAEGVGGSIDGFSATMNATAQRLGMTQTHYVNPNGLPADGQVTSARD 174

Query: 194 QAILGILLRKNFPQYYKYFS-IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
             IL   + ++ P+ Y+YFS I   R+  R+  N NKL+ +    DG KTG+   SG+N+
Sbjct: 175 LGILARAMIRDLPE-YEYFSHIPAIRFGKRVTHNFNKLIGRYPGADGFKTGFICASGYNL 233

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKH--QQTHRKDNLS----- 305
           V S       ++AVV+G  + Q+R  KA +L+       TL          DNL+     
Sbjct: 234 VASATRNGRRLIAVVLGANSGQDRAVKAAQLLERGFSANTLAWLTPSLGTVDNLAPIDAT 293

Query: 306 STSLKKSLMIKKLKRTYSQ 324
             +L++ +   K KR  S 
Sbjct: 294 PPNLREEMCGPKRKRPASD 312


>gi|296272811|ref|YP_003655442.1| beta-lactamase [Arcobacter nitrofigilis DSM 7299]
 gi|296096985|gb|ADG92935.1| Beta-lactamase [Arcobacter nitrofigilis DSM 7299]
          Length = 389

 Score =  152 bits (384), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 83/213 (38%), Positives = 132/213 (61%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   PASLTK+MT YI+   + S ++ L  ++ +SK A     S+ +L   T     + 
Sbjct: 55  DEKLPPASLTKLMTSYIVSTKINSGEISLKDKVFISKKAWKMTGSRTFLNVNTKVDLSKL 114

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           I  +I +S ND   A  E ISGSEK+F  LM+  AKK+ ++NT Y +A+GL  K+  +TA
Sbjct: 115 IKGMIVQSGNDAVIAIAEHISGSEKEFVKLMNKYAKKLNLKNTHYNDATGLPTKDHYSTA 174

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            D A+L   + K+FP +Y ++SI+ F+Y N    N NKLL K  ++DG+KTG+T  +G+ 
Sbjct: 175 HDIALLSRAIIKDFPDHYSWYSIKNFKYNNISQNNRNKLLWKDTSVDGLKTGHTMAAGYC 234

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           + +S + K+  ++AVVMG  +S+ R +++ +L+
Sbjct: 235 LASSAKRKNMRLIAVVMGTKSSKARAKESEKLL 267


>gi|292490707|ref|YP_003526146.1| beta-lactamase [Nitrosococcus halophilus Nc4]
 gi|291579302|gb|ADE13759.1| Beta-lactamase [Nitrosococcus halophilus Nc4]
          Length = 382

 Score =  152 bits (384), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 84/256 (32%), Positives = 145/256 (56%), Gaps = 4/256 (1%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYI 88
            MG  ++   + I  A  L AK   + I+ D    Q+    Q + R  PAS+TK+MT Y+
Sbjct: 17  FMGGTVWGQPLPIPAAPSLSAK---AYILQDFATGQVLAEAQADQRVEPASITKLMTAYV 73

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           +F  L+   +HL  ++ +S+ A     S+ +++  +  + E  +  +I +S ND S A  
Sbjct: 74  VFAELKRGNIHLEDKVLISEKAWRTGGSRTFIEVDSRVSVETLLQGMIIQSGNDASVALA 133

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E++ G+E+ FA LM+ +A+ +GM  + + N++GL  +N   T RD A L   L ++FP+Y
Sbjct: 134 EYVGGTEEIFATLMNQQAQALGMTGSHFVNSTGLPHENHYMTTRDIATLARALIRDFPEY 193

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           Y ++S ++F Y N    N N LL +  ++DG KTGYT  +G+ +V+S   +   ++AVVM
Sbjct: 194 YGWYSEQEFTYNNITQYNRNVLLRRDPSVDGCKTGYTEAAGYCLVSSAMREGMRLIAVVM 253

Query: 269 GMPTSQERDQKALELI 284
           G    + R +++L L+
Sbjct: 254 GTKGPKIRARESLALL 269


>gi|126665209|ref|ZP_01736192.1| D-alanyl-D-alanine carboxypeptidase [Marinobacter sp. ELB17]
 gi|126630579|gb|EBA01194.1| D-alanyl-D-alanine carboxypeptidase [Marinobacter sp. ELB17]
          Length = 392

 Score =  152 bits (383), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 136/238 (57%), Gaps = 8/238 (3%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           I+ +S +  +PK   ++++ N +        E   PASLTKMMT YI+   L   ++ + 
Sbjct: 41  IAGSSYVLMEPKSGQVIMENNSS--------ERLPPASLTKMMTAYIVERELDEGRIAMG 92

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
             +P+S TA     S+ +++E T  T E  +  ++ +S ND S A  EF++GSE  F  +
Sbjct: 93  DMVPISVTAWQTGGSRTFVREGTSVTVEDLLRGVVIQSGNDASVALAEFVAGSEGAFVDI 152

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           M+ +A  +GM NT ++NA+GL   N  +TA+D A+L      ++P+ Y  ++ + F + N
Sbjct: 153 MNQQADLLGMTNTNFENATGLPSPNHYSTAQDLALLAQATINDYPETYPIYAEKHFTFNN 212

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
               N N LL + +++DG+KTG+T  +G+ +V S +  D   +AVVMG  +++ R Q+
Sbjct: 213 IRQPNRNSLLWRDNSVDGLKTGHTEEAGYCLVASAKRDDTRFIAVVMGARSAESRSQE 270


>gi|83311331|ref|YP_421595.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum
           AMB-1]
 gi|82946172|dbj|BAE51036.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum
           AMB-1]
          Length = 417

 Score =  152 bits (383), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 119/207 (57%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE 129
           +   P +PASLTKMMT Y+ F  +++ K+  +  I VS+ AA+Q  + L L+     T  
Sbjct: 48  RGGAPHHPASLTKMMTAYVAFAAIKAGKVSQDDVITVSERAASQGGASLDLRPGERITLG 107

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
             + A+I RSAND + A  E + GSE  FA  M+ +A ++GM ++ ++NASG+     ++
Sbjct: 108 AALKAMIVRSANDAAVAVAEHVGGSESAFASRMTEEAARLGMTSSSFRNASGMTAGGHVS 167

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
           + RD A+L + + ++FP +   FS R   ++ R++   N  L      +G+KTG+T ++G
Sbjct: 168 SPRDMAVLAMAIERDFPTFRPLFSSRDTTWKGRVLPTVNGFLGAYAGAEGMKTGFTCSAG 227

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQER 276
           +N+V          +AVVMG  +S +R
Sbjct: 228 YNLVAIAHRGGRRALAVVMGAESSAQR 254


>gi|297181495|gb|ADI17682.1| d-alanyl-d-alanine carboxypeptidase [uncultured gamma
           proteobacterium HF0130_23I23]
          Length = 380

 Score =  152 bits (383), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 87/244 (35%), Positives = 140/244 (57%), Gaps = 7/244 (2%)

Query: 33  KILFLSIIMISMASELHAKPKY---SSIVIDVN-KNQMTGFKQDEPRYPASLTKMMTLYI 88
           K +FL+ + I++++ +   P     S I+ + N K  +  F  D P  PASLTK+MT Y+
Sbjct: 5   KFIFLTFLSINLSAAIPNPPDLGVGSYILYEPNTKKVLASFNADAPVEPASLTKLMTSYV 64

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           + +Y++   + L     +S  A     S+++++E T     + I  +I +S ND S A  
Sbjct: 65  VADYIKEDFIDLTDTPKISINAWKTPGSRMFIRESTKVPVSELIKGMIIQSGNDASVALA 124

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E ++GSE+ F+ LM+  A+++GM+NT + NASGL D   +T+A D A+L   L KNFP +
Sbjct: 125 EHVAGSEENFSYLMNEYARELGMENTSFNNASGLPDPLNVTSANDLAVLTGELIKNFPDH 184

Query: 209 YKYFSIRKFRYRNRIITNHNKLL---NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           Y+++S + F Y      N N+LL   N     DG+KTGYT ++G+ +V S       +VA
Sbjct: 185 YRHYSQKSFTYAGIAQKNRNQLLWRDNTSITFDGVKTGYTESAGYCLVGSAVKDGMRLVA 244

Query: 266 VVMG 269
           VV+G
Sbjct: 245 VVLG 248


>gi|89069769|ref|ZP_01157105.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanicola
           granulosus HTCC2516]
 gi|89044715|gb|EAR50826.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanicola
           granulosus HTCC2516]
          Length = 448

 Score =  152 bits (383), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 88/234 (37%), Positives = 133/234 (56%), Gaps = 2/234 (0%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
            Y+++V+D    Q+   +    R +PASLTKMMTLYI FE ++  ++ L+T + + + AA
Sbjct: 15  PYAAMVMDARTGQVFHAENATTRLHPASLTKMMTLYIAFEAVERGEISLDTVVTIPRQAA 74

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            + PS+L L           I A   +SAND +TA    ISGS++ FA  M+  A+ +GM
Sbjct: 75  AEPPSELGLVTGQQIRFRYLIRAAAVKSANDAATAIAFAISGSQEAFAARMNRTARAMGM 134

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN-KL 230
            +T + NA GL     ++TA D  ILG  +  ++PQYY  FS R      R ++N N + 
Sbjct: 135 NSTNFINAHGLTANGHMSTAADMTILGRHMIYDWPQYYNLFSRRTTDAGLREVSNTNRRF 194

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           L+     DGIKTGYT  +G N+V S +   + I+  V G P+S  R+Q+ +EL+
Sbjct: 195 LDAYAGADGIKTGYTNAAGSNLVASAQRGSERIIVTVFGAPSSAVRNQRVMELM 248


>gi|159185835|ref|NP_356978.2| penicillin-binding protein dacf precursor [Agrobacterium
           tumefaciens str. C58]
 gi|159140969|gb|AAK89763.2| penicillin-binding protein dacf precursor [Agrobacterium
           tumefaciens str. C58]
          Length = 389

 Score =  152 bits (383), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 130/229 (56%), Gaps = 1/229 (0%)

Query: 57  IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V+DV   ++   ++     YPASLTK+MT YI F  +++ K+   T++ +SK AA Q  
Sbjct: 55  MVVDVKTGKVISHQEAFRKWYPASLTKLMTAYIAFSQMKAGKISPQTEVVMSKKAADQPA 114

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           SK+Y K     T +  +  L+ +SAND++ A  E I G+   F   M+ +A+++GM +T 
Sbjct: 115 SKMYFKPGQKLTMDSALKLLLIKSANDIAVAIAETIGGTSDNFVAQMNAQAQRLGMSSTH 174

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           Y N +GL  K Q TTARD A+L +++++ FP+Y  YFS+       +   N N L+ +  
Sbjct: 175 YVNPNGLPGKGQYTTARDLALLALIIKREFPEYAHYFSLEGVTTGKKNYANFNMLVGRFE 234

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
             DG+KTG+   SGFN V S       ++ VV+G  +   R  ++ +L+
Sbjct: 235 GADGMKTGFICASGFNQVASAVRNGRSVITVVLGADSLAGRTDQSADLL 283


>gi|300705317|ref|YP_003746920.1| d-alanyl-d-alanine carboxypeptidase [Ralstonia solanacearum
           CFBP2957]
 gi|299072981|emb|CBJ44338.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
           [Ralstonia solanacearum CFBP2957]
          Length = 398

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/240 (36%), Positives = 143/240 (59%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           + ++ DV   Q + G   DE   PASLTK+MT YI FE ++  KL  +  I  ++T  T 
Sbjct: 44  AWMLTDVTSGQVLGGGNMDERVEPASLTKLMTAYIAFEAVRDGKLKYDQLITPTETVRTV 103

Query: 113 -QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S+++L+     +  + +  LI +S ND +    E + G+E  F +LM+ +A+++GM
Sbjct: 104 KTDESRMFLQAGKPVSVRELLQGLIVQSGNDAALVLAEAVGGTETNFVMLMNREAERLGM 163

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT + NA+GL D N  TTARD +IL   L KNFPQ YK++S ++F Y N    N N+LL
Sbjct: 164 KNTHFMNAAGLPDPNHYTTARDLSILTAALIKNFPQDYKFYSQKEFTYNNIKQPNRNRLL 223

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLR--YKDDP-----IVAVVMGMPTSQERDQKALELI 284
                +DG KTG+T+++G+ +VTS      D P     +++V++G  + Q R Q++L+++
Sbjct: 224 WLDPTVDGGKTGHTKSAGYCLVTSANRPLPDVPGASRRLLSVIVGTKSDQIRTQESLKVL 283


>gi|94501220|ref|ZP_01307742.1| D-alanyl-D-alanine carboxypeptidase [Oceanobacter sp. RED65]
 gi|94426647|gb|EAT11633.1| D-alanyl-D-alanine carboxypeptidase [Oceanobacter sp. RED65]
          Length = 380

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/289 (33%), Positives = 162/289 (56%), Gaps = 14/289 (4%)

Query: 30  LMGKILFL-SIIMISMASELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLTKMM 84
           L+   LFL S +  S  S +   P  ++   I++D N  + +     D+   PASLTK+M
Sbjct: 4   LIASFLFLFSTVTFSAPSIIPKPPSLAASSYILMDANSGEVLVEHNADKVLPPASLTKLM 63

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T +I FE L    + L+ ++ VS  A     S+++++E T    E  +  +I +S ND S
Sbjct: 64  TAFIAFEELSYGNIALDEKVRVSVKAWKAEGSRMFIREGTTVPVEDLLRGIIIQSGNDAS 123

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  E ISG+E  FA +M+  A  +GM N+ +KNA+GL  +   ++ARD A L   +  N
Sbjct: 124 IAMAEHISGTESSFADIMNQYAVSLGMTNSQFKNATGLPSEGHHSSARDMATLARAIIFN 183

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
             Q+Y  +S +KF+Y N   TN N+LL     +DG+KTG+T  +G+ +V+S + +D  ++
Sbjct: 184 HKQHYPIYSEKKFKYNNIEQTNRNRLLFWNDKVDGLKTGHTEEAGYCLVSSAQDEDMRLI 243

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR----KDNLSSTSL 309
           AVVMG  + + R +++ +L+T        ++ ++HR    K++L +T +
Sbjct: 244 AVVMGANSERARARESNKLLT-----YGFRYFESHRLYESKESLQTTDV 287


>gi|53802656|ref|YP_112644.1| D-alanyl-D-alanine carboxypeptidase [Methylococcus capsulatus str.
           Bath]
 gi|53756417|gb|AAU90708.1| D-alanyl-D-alanine carboxypeptidase [Methylococcus capsulatus str.
           Bath]
          Length = 392

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 128/225 (56%), Gaps = 3/225 (1%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   PASLTK+MT YI+F  L    + L   + VS+ A     S+++ +     + E  
Sbjct: 63  DERLEPASLTKVMTAYILFRELAQGHVKLEDMVTVSEKAWRTEGSRMFAQVGAQISVENL 122

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +I +S ND S A  E ++G E  FA LM+  A+++GM NT +KN+ GL D +  TTA
Sbjct: 123 LKGMIVQSGNDASVALAEHVAGDEAVFAQLMNQNAERLGMTNTHFKNSMGLPDPDHYTTA 182

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           RD A L   + K FPQYY + +I++F + +    N N+LL +  ++DG+KTG+T  +G+ 
Sbjct: 183 RDLATLTRAMIKEFPQYYPWHAIKEFVFNDIKQVNRNRLLWRDPSVDGVKTGHTEGAGYC 242

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKKTL 293
           ++TS     D +V+VV+G  +  +R   +Q  L     F E K +
Sbjct: 243 LITSAVRDGDRMVSVVLGTKSDTDRANANQALLNYGFRFFETKPV 287


>gi|163795501|ref|ZP_02189467.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium BAL199]
 gi|159179100|gb|EDP63633.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium BAL199]
          Length = 385

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 136/231 (58%), Gaps = 3/231 (1%)

Query: 56  SIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +I++D +  Q+  F+++  E   PAS+TK+MT+++ FE L+  +L +  +IP+S+ A  +
Sbjct: 39  AILMDYDTGQVL-FEKNSTELMPPASMTKIMTVFLAFERLKDGRLKMTDEIPISENAWRK 97

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             SK++++  +       ++ +I +S ND + A  E ISGSE+ F  LM+ +A++IG++ 
Sbjct: 98  GGSKMFVEVGSRVVLSDLLMGIIVQSGNDATIALAEAISGSEEAFGELMTTRAREIGLER 157

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           ++++N++G  D     TA D A+L     + FP YY  FS   F Y      N N LL K
Sbjct: 158 SVFRNSTGWPDPEHRMTAHDLAVLAAETIRRFPDYYSLFSETSFTYNKIKQGNRNPLLYK 217

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
              +DG+KTG+T N+G+ +  S +  D  ++ VV G+ + +ER  ++  LI
Sbjct: 218 AMGVDGLKTGHTENAGYGLTVSAKRGDRRLILVVNGLSSVRERSDESERLI 268


>gi|319407837|emb|CBI81490.1| penicillin-binding protein [Bartonella sp. 1-1C]
          Length = 360

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/262 (35%), Positives = 144/262 (54%), Gaps = 7/262 (2%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL 93
           LF S I+  ++S   A P  S   +D    ++    Q  E  YPASLTK+M  YIIF  +
Sbjct: 8   LFFSFILSIISSLTLAHPFIS---VDTTTGRILKHNQAFERWYPASLTKLMMTYIIFRAM 64

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            + K+     I +SK AA         K  +  T +  +   + +S ND++ A  E ISG
Sbjct: 65  STGKISPYKHITISKNAAQAPAIHSGYKAGSVLTLDTALKITLVKSTNDLAIAISEAISG 124

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S++ F   M+ +A+++GM  T + N SGL + N  +TARD A+L + +R+ FPQY  YFS
Sbjct: 125 SQEAFVKQMNAEARRLGMFGTNFTNTSGLPNPNNYSTARDMALLAVQIRREFPQYTHYFS 184

Query: 214 IRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           I    + N  +I +N N L+ +   IDG+KTG+   SGFN+V S       I+ V++G  
Sbjct: 185 IPAIDFGNGKKIQSNLNNLIGRFDGIDGMKTGFICASGFNLVASATRNKRTIIVVILGSE 244

Query: 272 TSQERDQKALELI-TSFLEKKT 292
           +  +R++KA +L+   FL+K +
Sbjct: 245 SINKREEKAAQLLDAGFLDKGS 266


>gi|153008237|ref|YP_001369452.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi
           ATCC 49188]
 gi|151560125|gb|ABS13623.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi
           ATCC 49188]
          Length = 371

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/235 (36%), Positives = 137/235 (58%), Gaps = 7/235 (2%)

Query: 56  SIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           SI +DV   ++  ++Q E     YPASLTKMMT Y+ F  LQS ++ L++ + ++  AA 
Sbjct: 28  SIAVDVATGKV--YQQQEAFQRWYPASLTKMMTAYVAFRALQSGQMTLDSPVRMTVNAAK 85

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           + PSK+  K  +  T +  +  ++ +SANDV+ A  E + G+E  F   M+ +A++IGM 
Sbjct: 86  EPPSKMGYKPGSVMTLDTALKIMLVKSANDVAVAVAEAVGGTESGFVQRMNAEAQRIGMV 145

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKL 230
            + + N +GLH+ N  TTARD A+L + LR+ FPQY  YF+          ++  N+N L
Sbjct: 146 GSHFANPNGLHNPNNYTTARDLAVLAVQLRREFPQYAHYFATEAIDPGAGKKVQANYNIL 205

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           L +    DG+KTG+   SGFN+ +S       ++A+V+G    + R  +A +L+T
Sbjct: 206 LGRYDGADGMKTGFVCASGFNLASSATRNGRTVLAIVLGADRQEARAVQAAQLMT 260


>gi|121603114|ref|YP_980443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Polaromonas
           naphthalenivorans CJ2]
 gi|120592083|gb|ABM35522.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Polaromonas naphthalenivorans CJ2]
          Length = 402

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/231 (35%), Positives = 133/231 (57%), Gaps = 7/231 (3%)

Query: 34  ILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
           +L +S+ + +  ++    P+ ++   +++DV  NQ+   K  D P  PASLTK+MT Y++
Sbjct: 19  VLLVSVALPAAHAQAPQVPEIAARSYLLLDVTANQILAAKDIDSPVEPASLTKLMTEYLV 78

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           F+ L+SKK+ L     VS+ A     S++++  K     E  I  +I +S ND + A  E
Sbjct: 79  FDALKSKKITLQQTFGVSQRAWKMPGSRMFIDPKMQVPVEDLIKGMIVQSGNDATMALAE 138

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            + G+ + F  LM+ +AK +GM++T YKN  GL +   ITTARD +IL   L  +FP Y 
Sbjct: 139 GVGGTAEHFVELMNQQAKALGMKSTSYKNPEGLTEAGHITTARDLSILSTRLMSDFPDYI 198

Query: 210 KYFSIRKFRYRNRII---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
            Y +I+K+RY        TN N LL +   +DG+KTG+T  +G+ ++ + +
Sbjct: 199 GYSAIKKYRYPGTPATNDTNRNTLLFRDPTVDGLKTGHTNAAGYCMIATAK 249


>gi|326409095|gb|ADZ66160.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella
           melitensis M28]
 gi|326538799|gb|ADZ87014.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase
           fraction C) [Brucella melitensis M5-90]
          Length = 192

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/168 (44%), Positives = 110/168 (65%), Gaps = 6/168 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
           A    S +V D +  +M G  QD+      PASL KMMTLY+ FE L++ +LH +  +P+
Sbjct: 27  AMASTSWVVFDADSGRMLG--QDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPI 84

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
           SK AA++   KL+LK     +T   +  +I  SAND +T  GE+++GSE  FA LM+ +A
Sbjct: 85  SKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRA 144

Query: 167 KKIGMQNTIYKNASGL-HDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           ++IGM++TI+ N SGL  + +Q+TTARD A+LG+ LR++FP+ Y  FS
Sbjct: 145 RQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYALFS 192


>gi|75676866|ref|YP_319287.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
           winogradskyi Nb-255]
 gi|74421736|gb|ABA05935.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
           winogradskyi Nb-255]
          Length = 455

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 137/253 (54%), Gaps = 3/253 (1%)

Query: 34  ILFLSIIMISMASE--LHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFE 91
           I+  ++ ++++A    +HA   +  I  D  K  +       P YPAS+TK+MT Y+   
Sbjct: 16  IVLAAVALVTLAPSRTVHATEAHLLIEADTGK-VLEAENATFPWYPASVTKLMTAYVTLT 74

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            ++ K+L L+T + VS TAA Q+PSK+  +  T  T +  +  ++ +SAND++    E +
Sbjct: 75  AVKQKRLTLDTLLTVSPTAAAQSPSKMGFRPGTQVTVDNALKMMMVKSANDMAVVLAEGV 134

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            GS   F+  M+  A+++GM  + Y N +GL    QI++ARD AIL      + P+Y  +
Sbjct: 135 GGSIDGFSAEMNAAAQRLGMTQSSYVNPNGLPADGQISSARDMAILARAFIHDLPEYEYF 194

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
             I   RY  R+  N NKL+ +    DG KTG+   SG+N+V S       ++AVV+G  
Sbjct: 195 VHIPSIRYGRRVTHNFNKLIGRFPGADGFKTGFICASGYNLVASATQNGKRLIAVVLGAS 254

Query: 272 TSQERDQKALELI 284
           +   R  +A +++
Sbjct: 255 SGTMRAVRAAQML 267


>gi|17987196|ref|NP_539830.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase
           fraction C) [Brucella melitensis bv. 1 str. 16M]
 gi|260564074|ref|ZP_05834560.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
           16M]
 gi|265991153|ref|ZP_06103710.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|17982866|gb|AAL52094.1| penicillin-binding protein 6 (d-alanyl-d-alanine carboxypeptidase
           fraction c) [Brucella melitensis bv. 1 str. 16M]
 gi|260154090|gb|EEW89182.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
           16M]
 gi|263001937|gb|EEZ14512.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
           str. Rev.1]
          Length = 205

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/168 (44%), Positives = 110/168 (65%), Gaps = 6/168 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
           A    S +V D +  +M G  QD+      PASL KMMTLY+ FE L++ +LH +  +P+
Sbjct: 40  AMASTSWVVFDADSGRMLG--QDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPI 97

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
           SK AA++   KL+LK     +T   +  +I  SAND +T  GE+++GSE  FA LM+ +A
Sbjct: 98  SKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRA 157

Query: 167 KKIGMQNTIYKNASGL-HDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           ++IGM++TI+ N SGL  + +Q+TTARD A+LG+ LR++FP+ Y  FS
Sbjct: 158 RQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYALFS 205


>gi|319406361|emb|CBI80002.1| penicillin-binding protein [Bartonella sp. AR 15-3]
          Length = 367

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/260 (34%), Positives = 141/260 (54%), Gaps = 6/260 (2%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL 93
           LF S I+  + S   A P  S   +D    ++    Q  E  YPASLTK+M  Y+IF  +
Sbjct: 8   LFFSFILSMIGSLTLAHPFIS---VDATTGRILKHNQAFERWYPASLTKLMMTYVIFRAM 64

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            + ++  +  I +SK AA         K  +  T +  +   + +S ND++ A  E ISG
Sbjct: 65  STGEISPHKHITISKNAAQAPAINSGYKAGSVLTLDTALKITLVKSTNDLAIAISEAISG 124

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S++ F   M+ +A+++GM  T + N SGL + N  +TARD A+L + +R+ FPQY  YFS
Sbjct: 125 SQEAFVKQMNAEAQRLGMFGTNFTNTSGLPNPNNYSTARDIALLAVQIRREFPQYTHYFS 184

Query: 214 IRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           I    + N  +I +N N L+ +   IDG+KTG+   SGFN+V S       I+ V++G  
Sbjct: 185 IPAIDFGNGQKIQSNSNNLIGRFDGIDGMKTGFICASGFNLVASATRNKRTIIVVILGSD 244

Query: 272 TSQERDQKALELITSFLEKK 291
           +  +R++KA EL+ +    K
Sbjct: 245 SINKREEKAAELLNAGFSDK 264


>gi|265994989|ref|ZP_06107546.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
           str. Ether]
 gi|265999456|ref|ZP_06111697.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
           str. 63/9]
 gi|262766102|gb|EEZ11891.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
           str. Ether]
 gi|263094078|gb|EEZ18000.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
           str. 63/9]
          Length = 205

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/168 (44%), Positives = 110/168 (65%), Gaps = 6/168 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
           A    S +V D +  +M G  QD+      PASL KMMTLY+ FE L++ +LH +  +P+
Sbjct: 40  AMASTSWVVFDADSGRMLG--QDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPI 97

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
           SK AA++   KL+LK     +T   +  +I  SAND +T  GE+++GSE  FA LM+ +A
Sbjct: 98  SKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRA 157

Query: 167 KKIGMQNTIYKNASGL-HDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           ++IGM++TI+ N SGL  + +Q+TTARD A+LG+ LR++FP+ Y  FS
Sbjct: 158 RQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYALFS 205


>gi|319404878|emb|CBI78479.1| penicillin-binding protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 368

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/260 (35%), Positives = 141/260 (54%), Gaps = 6/260 (2%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL 93
           LF   I+  M+S   A P  S   +D    ++    Q  E  YPASLTK+M  YIIF  +
Sbjct: 8   LFFFFILSIMSSLSLAHPFIS---VDATTGRILKHNQAFERWYPASLTKLMMTYIIFRAM 64

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            + K+  +  I +SK AA         K  +  T +  +   + +S ND++ A  E ISG
Sbjct: 65  STGKISPHKHITISKNAAQAPAINSGYKAGSVLTLDTALKITLVKSTNDLAIAISEAISG 124

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S++ F   M+ +A+++GM  T + N SGL + N  +TARD A+L + +R+ FPQY  YFS
Sbjct: 125 SQEAFVKQMNAEARRLGMFGTNFTNTSGLPNPNNYSTARDMALLAVQIRREFPQYTHYFS 184

Query: 214 IRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           I    + N  +I +N N L+ +   IDG+KTG+   SGFN+V S       I+ V++G  
Sbjct: 185 IPAIDFGNGKKIQSNSNNLIGRFDGIDGMKTGFICASGFNLVASATRNKRTIIVVILGSE 244

Query: 272 TSQERDQKALELITSFLEKK 291
           +  +R++KA +L+ +    K
Sbjct: 245 SINKREEKAAQLLNAGFSDK 264


>gi|83746894|ref|ZP_00943941.1| D-alanyl-D-alanine carboxypeptidase [Ralstonia solanacearum UW551]
 gi|207742170|ref|YP_002258562.1| penicillin-binding protein (d-alanyl-d-alanine carboxypeptidase)
           [Ralstonia solanacearum IPO1609]
 gi|83726479|gb|EAP73610.1| D-alanyl-D-alanine carboxypeptidase [Ralstonia solanacearum UW551]
 gi|206593558|emb|CAQ60485.1| penicillin-binding protein (d-alanyl-d-alanine carboxypeptidase)
           [Ralstonia solanacearum IPO1609]
          Length = 398

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/240 (36%), Positives = 143/240 (59%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           + ++ DV   Q + G   DE   PASLTK+MT YI FE ++  KL  +  I  +++  T 
Sbjct: 44  AWMLTDVTSGQVLGGGNMDERVEPASLTKLMTAYIAFEAVRDGKLKYDQLITPTESVRTV 103

Query: 113 -QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S+++L+     +  + +  LI +S ND +    E + G+E  F +LM+ +A+++GM
Sbjct: 104 KTDESRMFLQAGKPVSVRELLQGLIVQSGNDAALVLAEAVGGTETNFVMLMNREAERLGM 163

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT + NA+GL D N  TTARD +IL   L KNFPQ YK++S ++F Y N    N N+LL
Sbjct: 164 KNTHFMNAAGLPDPNHYTTARDLSILTAALIKNFPQDYKFYSQKEFTYNNIKQPNRNRLL 223

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLR--YKDDP-----IVAVVMGMPTSQERDQKALELI 284
                +DG KTG+T+++G+ +VTS      D P     +++V++G  + Q R Q++L+++
Sbjct: 224 WLDPTVDGGKTGHTKSAGYCLVTSANRPLPDVPGASRRLLSVIVGTKSDQIRTQESLKVL 283


>gi|207727766|ref|YP_002256160.1| penicillin-binding protein (d-alanyl-d-alanine carboxypeptidase)
           [Ralstonia solanacearum MolK2]
 gi|206591007|emb|CAQ56619.1| penicillin-binding protein (d-alanyl-d-alanine carboxypeptidase)
           [Ralstonia solanacearum MolK2]
          Length = 398

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/240 (36%), Positives = 143/240 (59%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           + ++ DV   Q + G   DE   PASLTK+MT YI FE ++  KL  +  I  +++  T 
Sbjct: 44  AWMLTDVTSGQVLGGGNMDERVEPASLTKLMTAYIAFEAVRDGKLKYDQLITPTESVRTV 103

Query: 113 -QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S+++L+     +  + +  LI +S ND +    E + G+E  F +LM+ +A+++GM
Sbjct: 104 KTDESRMFLQAGKPVSVRELLQGLIVQSGNDAALVLAEAVGGTETNFVMLMNREAERLGM 163

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT + NA+GL D N  TTARD +IL   L KNFPQ YK++S ++F Y N    N N+LL
Sbjct: 164 KNTHFMNAAGLPDPNHYTTARDLSILTAALIKNFPQDYKFYSQKEFTYNNIKQPNRNRLL 223

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLR--YKDDP-----IVAVVMGMPTSQERDQKALELI 284
                +DG KTG+T+++G+ +VTS      D P     +++V++G  + Q R Q++L+++
Sbjct: 224 WLDPTVDGGKTGHTKSAGYCLVTSANRPLPDVPGASRRLLSVIVGTKSDQIRTQESLKVL 283


>gi|254452232|ref|ZP_05065669.1| D-alanyl-D-alanine carboxypeptidase family protein [Octadecabacter
           antarcticus 238]
 gi|198266638|gb|EDY90908.1| D-alanyl-D-alanine carboxypeptidase family protein [Octadecabacter
           antarcticus 238]
          Length = 450

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 86/246 (34%), Positives = 135/246 (54%), Gaps = 2/246 (0%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           M ++A        Y+++V+D    ++   +  D   +PASLTKMMTLYI F+ ++  ++ 
Sbjct: 1   MAALAPIAGNSAPYAAMVMDARTGEILHSRNADTQLHPASLTKMMTLYIAFQAIERGEIS 60

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           L+  I ++  AA + PSKL L           + A   +SAND +TA G  + G+E  FA
Sbjct: 61  LDDMITITPVAANEPPSKLGLVAGQRIQFRYLVRASGVKSANDAATAIGIALEGNEAAFA 120

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             M+  A+ +GM  T ++NA GL +   ++TARD  +LG  +  +FPQYY  FS      
Sbjct: 121 RRMTATARAMGMSRTTFRNAHGLTESGHLSTARDMTVLGRHMIYDFPQYYNIFSRLTTDA 180

Query: 220 RNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
             R + N N + L+     DGIKTGYTR +GFN+V S     + I+A + G  ++ +R+ 
Sbjct: 181 GVRQVANTNRRFLSAYRGADGIKTGYTRAAGFNLVASAERGQERIIATMFGGSSTAQRNA 240

Query: 279 KALELI 284
           +  EL+
Sbjct: 241 RVAELL 246


>gi|256821559|ref|YP_003145522.1| Serine-type D-Ala-D-Ala carboxypeptidase [Kangiella koreensis DSM
           16069]
 gi|256795098|gb|ACV25754.1| Serine-type D-Ala-D-Ala carboxypeptidase [Kangiella koreensis DSM
           16069]
          Length = 389

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 130/219 (59%), Gaps = 6/219 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYF 126
           D+   PASLTKMMT YII + L    L ++ ++ VS+ A  QNP     S ++++   Y 
Sbjct: 58  DQKLPPASLTKMMTSYIIGDELHKGNLSMDDKVLVSENAWAQNPKLKGGSLMFIEVNKYV 117

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
             E     +I +S ND S A  E I+G+E  FA LM+  A K+GM++T ++N++G   + 
Sbjct: 118 RVEDLYRGIIIQSGNDASIAMAEHIAGTEGAFADLMNQYAAKLGMKDTHFENSTGWPAEG 177

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYT 245
            +TTARD AIL   L ++FP+ YK ++ R+F Y      N N LL +   N+DG+KTG+T
Sbjct: 178 HVTTARDLAILARALIRDFPEDYKLYAEREFTYNGIKQANRNGLLGDPTLNVDGLKTGHT 237

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
             +G+ +V+S   +D  +++VVMG  +  ER  +  +L+
Sbjct: 238 EEAGYCLVSSAEKEDMRLISVVMGTDSEAERAAETRKLL 276


>gi|56477153|ref|YP_158742.1| putative penicillin-binding protein [Aromatoleum aromaticum EbN1]
 gi|56313196|emb|CAI07841.1| putative penicillin-binding protein [Aromatoleum aromaticum EbN1]
          Length = 401

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 144/241 (59%), Gaps = 4/241 (1%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A  L AK   S +++D    Q+   ++ + R  PASLTK+MT Y+ F  L++  + L+  
Sbjct: 49  APTLAAK---SWLLMDHATGQVLAAQEPDARIEPASLTKLMTAYLTFAALKNGTITLDQT 105

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           +PVS  A     S+++++     T  +    +I +S ND   A  E ++GSE+ FA +M+
Sbjct: 106 VPVSNKAWRSEGSRMFIEPNRPVTVGELTSGMIIQSGNDACVALAELLAGSEEAFAHMMN 165

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI 223
            +A+++GM+NT + N++GL D    TTARD  +L   + ++FP+YY+Y+S +++ Y    
Sbjct: 166 AEAQRLGMKNTHFTNSTGLPDPQLYTTARDLGLLAAAIVRDFPEYYRYYSQKEYTYNKIT 225

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
             N N+LL     +DG+KTG+T ++G+ +++S +     +++V++G  +   R Q++L+L
Sbjct: 226 QPNRNRLLWLDTTVDGLKTGHTSSAGYCLISSAQRGPRRLISVMLGTDSDTIRAQESLKL 285

Query: 284 I 284
           +
Sbjct: 286 L 286


>gi|254427252|ref|ZP_05040959.1| D-alanyl-D-alanine carboxypeptidase family [Alcanivorax sp. DG881]
 gi|196193421|gb|EDX88380.1| D-alanyl-D-alanine carboxypeptidase family [Alcanivorax sp. DG881]
          Length = 386

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 83/246 (33%), Positives = 138/246 (56%), Gaps = 4/246 (1%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLH 99
           M+  A ++ AK     +++D    Q+      E R P ASLTKMMT YI+ E LQ   + 
Sbjct: 29  MVPRAPQIEAK---GYLLMDAASGQVIVEHNAEQRLPPASLTKMMTAYIVEEELQKGNIS 85

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
                P+S  A     S+++++E T       +  +I +S ND S A  E+I+GSE  FA
Sbjct: 86  EKDMAPISVQAWQMGGSRMFVREGTRVPVGDLLRGIIIQSGNDASVAMAEYIAGSEDAFA 145

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            LM+  A ++GM ++ + NA+G   +N  TTA+D AIL   + ++FP +Y  ++ ++F Y
Sbjct: 146 DLMNQHANRLGMDSSHFMNATGWPAENHFTTAKDMAILARAIVRDFPDHYDLYAKKEFTY 205

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
                 N N LL +   +DG+KTG+T  +G+ +V+S +  +  ++AVVMG  +   R ++
Sbjct: 206 NGITQQNRNLLLWRDPTVDGLKTGHTDEAGYCLVSSAKKDNMRLIAVVMGTASESARARE 265

Query: 280 ALELIT 285
           + +L+T
Sbjct: 266 SQKLLT 271


>gi|320354031|ref|YP_004195370.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfobulbus propionicus
           DSM 2032]
 gi|320122533|gb|ADW18079.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfobulbus propionicus
           DSM 2032]
          Length = 374

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/242 (36%), Positives = 140/242 (57%), Gaps = 10/242 (4%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           P  S++VI+ +  ++  F+   D   YPAS+ K+M LY+I + ++   L L+  +PV+  
Sbjct: 32  PYVSALVIEADSGKVL-FESNADVKVYPASVLKLMDLYVILDRIEQGALKLDEMVPVTVE 90

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A+    S++YL  K  F+ E+ I AL+ +SAND + A    I+GS++ F  LM+ KA+ +
Sbjct: 91  ASKTGGSQVYLDPKEQFSVEELIYALMVQSANDAAVALATHIAGSKEGFVALMNQKAQAL 150

Query: 170 GMQNTIYKNASGL----HDKNQITTARDQAILGILLRKNFPQYYKYFS--IRKFRYRNRI 223
           GM+++++ +  GL      +  +TTARD AIL   L K  P+  KY     R FR    I
Sbjct: 151 GMKHSVFHSVHGLPPSEGQEPDVTTARDLAILCRELAKR-PEALKYTGTQTRGFREDKFI 209

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           + NHNKLL ++   DG KTGY + +GF+I  + +     I+ +VMG    + RD KA+EL
Sbjct: 210 MRNHNKLLTQVPGCDGFKTGYYQAAGFSIAATAKKGGVRIITLVMGSKDRKVRDAKAVEL 269

Query: 284 IT 285
           + 
Sbjct: 270 LA 271


>gi|239833080|ref|ZP_04681409.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium
           LMG 3301]
 gi|239825347|gb|EEQ96915.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium
           LMG 3301]
          Length = 389

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 85/234 (36%), Positives = 135/234 (57%), Gaps = 5/234 (2%)

Query: 56  SIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           SI +DV   ++   +QD  +  YPASLTKMMT Y+ F  LQS ++ L + + ++  AA +
Sbjct: 46  SIAVDVATGKVYA-QQDAFQRWYPASLTKMMTAYVAFRALQSGQMTLESPVRMTVNAAKE 104

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
            PSK+  K  +  T +  +  ++ +SANDV+ A  E + G+E  F   M+ +A++IGM  
Sbjct: 105 PPSKMGYKPGSVMTLDSALKIMLVKSANDVAVAVAEAVGGTESAFVQRMNAEAQRIGMVG 164

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLL 231
           + + N +GLHD    TTARD A+L + LR+ FPQY  YF+          ++  N+N LL
Sbjct: 165 SHFANPNGLHDPQNYTTARDLAVLAVQLRREFPQYAHYFATEAIDPGAGKKVQANYNILL 224

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            +    DG+KTG+   SGFN+ +S       ++A+V+G    + R  +A +L+T
Sbjct: 225 GRYDGADGMKTGFVCASGFNLASSATRNGRTVLAIVLGADRQEARAVQAAQLMT 278


>gi|220935870|ref|YP_002514769.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219997180|gb|ACL73782.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 391

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 78/210 (37%), Positives = 128/210 (60%), Gaps = 6/210 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTT 128
           DE   PASLTK+MT Y++F+ ++   + L+ ++ +S+ A     Q  S+++++       
Sbjct: 57  DERVEPASLTKLMTAYLVFQEIERGTISLDDEVRISERAWRTGMQGASRMFIEVNNRVRL 116

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQ 187
           +  +  LI +S ND S A  E + G+E  F  LM+ +A+ +GM NT + N+ GL  ++ Q
Sbjct: 117 QDLLRGLIIQSGNDASVALAEHVGGTEGAFVDLMNAQARALGMVNTHFTNSHGLPTEEAQ 176

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRN 247
            T+ARD A+L   L ++FPQ+Y Y+S R F +     +N N LL +   +DG+KTG+TR 
Sbjct: 177 YTSARDMALLASALIRDFPQHYGYYSERNFTFNGITQSNRNLLLWRDSQVDGLKTGWTRT 236

Query: 248 SGFNIVTSLRYKDDPIVAVVMGM--PTSQE 275
           SG+N+V+S   +   +VAVVMG+  P+ Q+
Sbjct: 237 SGYNLVSSREQEGMRLVAVVMGIDAPSHQQ 266


>gi|88810567|ref|ZP_01125824.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrococcus mobilis
           Nb-231]
 gi|88792197|gb|EAR23307.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrococcus mobilis
           Nb-231]
          Length = 340

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 135/226 (59%), Gaps = 3/226 (1%)

Query: 59  IDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           +D + NQ +     D+   PASLTKMMT Y++F  L+SK + ++ Q+ VS+ A  +  S+
Sbjct: 1   MDHDSNQVLVEVNVDKRHDPASLTKMMTAYVVFSELKSKHIAIDDQVTVSEKAWREPGSR 60

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           ++++       +  +  +I +S ND S A  E ++G+E  FA +M+  A+ +GM++T Y 
Sbjct: 61  MFIEVGDKVPVKALLQGMIVQSGNDASVALAEHVAGNESTFAQVMNQYARTLGMEHTHYV 120

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNI 237
           NA+GL D    TTA D A+L   L ++FPQY+  F+ +K+ Y      N NKLL +  ++
Sbjct: 121 NATGLPDPKHYTTAHDTALLSQALMRDFPQYHSMFAEKKYTYNGIEQYNRNKLLWRDPSV 180

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER--DQKAL 281
           DG+KTG+T  +G+ + +S    +  +++VVMG  + + R  D +AL
Sbjct: 181 DGLKTGHTEAAGYCLASSAERDNMRLISVVMGAGSEEARLSDTQAL 226


>gi|92119190|ref|YP_578919.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis
           X14]
 gi|91802084|gb|ABE64459.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis
           X14]
          Length = 455

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 119/220 (54%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           P YPASLTKMMT Y+    ++  ++ L+T   VS TAA Q+PSK+  +  T  T +  + 
Sbjct: 64  PWYPASLTKMMTAYVTLTAVKQGRITLDTLFTVSPTAAAQSPSKMGFRPGTQVTVDNALK 123

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            ++ +SAND++    E + GS   F+  M+  A+++GM  T Y N +GL    QIT+ARD
Sbjct: 124 MMLVKSANDMAVVLAEGVGGSIDGFSAEMNATAQRLGMTQTSYVNPNGLPADGQITSARD 183

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
             IL   +  + P+Y  +  I   RY  R+  N NKL+ +    DG KTG+   SG+N+V
Sbjct: 184 LGILARAIIHDLPEYEYFMRIPSIRYGRRVTRNFNKLIGRFPGADGFKTGFICASGYNLV 243

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
            S       ++AVV+G  +   R  +  +++       TL
Sbjct: 244 GSATQNGKRLIAVVLGASSGTMRAVRVAQMLERGFANNTL 283


>gi|218507214|ref|ZP_03505092.1| probable D-alanyl-D-alanine carboxypeptidase protein [Rhizobium
           etli Brasil 5]
          Length = 200

 Score =  149 bits (376), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 71/179 (39%), Positives = 111/179 (62%), Gaps = 1/179 (0%)

Query: 44  MASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           M +   A+   +S V+D    Q +    QD+  YPASLTKMMTLY+ FE L   +L    
Sbjct: 19  MGAFAQAEAGQASFVVDAQSGQVLEASNQDDLNYPASLTKMMTLYLAFEALHQGRLTWEQ 78

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           ++ +S+ A ++ P KL +      T  + + +++  SAND + A  E + GSE+ FA  M
Sbjct: 79  KLTMSENAESKEPFKLAIGAGRQVTLREAVESIVVLSANDSAVAIAEQLGGSEQAFARAM 138

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           ++KA ++GM++T++KN SGL D  Q+TTARD A LG+ L ++FP+ +K FS+R F++R 
Sbjct: 139 TDKAHQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRDFPEEFKLFSMRGFQFRG 197


>gi|297180556|gb|ADI16768.1| d-alanyl-d-alanine carboxypeptidase [uncultured gamma
           proteobacterium HF0010_11B23]
          Length = 368

 Score =  149 bits (376), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 79/207 (38%), Positives = 119/207 (57%)

Query: 63  KNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKE 122
           K  +  F  DEP  PASLTK+MT Y++ +Y++   + L+    +S  A     S+++++E
Sbjct: 30  KKVLVSFNADEPVQPASLTKLMTSYVVADYIKEDFIRLDDTPKISIKAWKTEGSRMFIRE 89

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
            T       I  +I +S ND S A  E ++GSE+ FA LM+  A ++GMQN+ + NASGL
Sbjct: 90  GTKVAVSDLIKGMIIQSGNDASVALAEHVAGSEENFAYLMNEYASQLGMQNSSFNNASGL 149

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKT 242
            D   +T+A D A+L   L  NFP++YK +S + + Y      N N+LL +    DG KT
Sbjct: 150 PDPLNVTSAYDLALLTSALINNFPEHYKLYSEKSYTYAGIKQPNRNRLLWRSDIFDGAKT 209

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           GY   +G+ +V S    D  +VAVV+G
Sbjct: 210 GYHSQAGYCLVGSAMRGDMRLVAVVLG 236


>gi|46581059|ref|YP_011867.1| D-alanyl-D-alanine carboxypeptidase family protein [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450480|gb|AAS97127.1| D-alanyl-D-alanine carboxypeptidase family protein [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311234737|gb|ADP87591.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio vulgaris
           RCH1]
          Length = 441

 Score =  149 bits (375), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 141/259 (54%), Gaps = 6/259 (2%)

Query: 31  MGKILFLSIIMISMASELHAKPK---YSSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMT 85
           +G +L +   +++     HA  +    S+ +ID N  ++  F+Q  D    PASLTK+++
Sbjct: 17  LGIVLLVLTFVVASVCGAHASERLNVVSAFLIDQNSRRVL-FEQNADAQIPPASLTKVIS 75

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           +Y+  +++++ K  L  ++ +S  AA    S+++L      + ++ ++ +   S ND S 
Sbjct: 76  MYVALDHIRAGKASLADKVKISARAARTGGSRMFLTRGETVSLDELLMGMAVSSGNDASV 135

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E I+GS  +F  LM+ KA+ +GM  T ++N +GL    Q TTARD   L +      
Sbjct: 136 AVAEHIAGSTDRFVQLMNAKARALGMTETTFRNVNGLPAAGQKTTARDMGKLAVSYLTAH 195

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           PQ  +Y S R  R+   I TN N +L      DG+KTG+   SG+N++++++  +  +VA
Sbjct: 196 PQALRYHSTRFIRHNKVITTNKNPMLGNCEGADGLKTGWVCASGYNLISTVKRGNTRLVA 255

Query: 266 VVMGMPTSQERDQKALELI 284
           VV+G   SQ R Q+   LI
Sbjct: 256 VVLGAENSQVRGQEMNRLI 274


>gi|165918943|ref|ZP_02219029.1| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii RSA 334]
 gi|165917340|gb|EDR35944.1| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii RSA 334]
          Length = 384

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 76/207 (36%), Positives = 122/207 (58%), Gaps = 2/207 (0%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MTLY+ F+ L+S ++HL+ +  VS  A     S+++LKE         I  +I
Sbjct: 56  PASLTKLMTLYVTFQALKSAQIHLDDKAKVSVKAWRTGGSRMFLKEGAEVPVNLLIQGII 115

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND      ++I G+E  FA +M+  A ++GM+N+ Y +++GL   +  +T  D A+
Sbjct: 116 VASGNDACVTMAQYIGGTEPSFAQMMNQTAARLGMKNSHYVDSTGLPRPDHYSTPYDMAV 175

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   +  +FP+YY YFS +   Y N    N N+LL +  + DG+KTG+T  +G+ ++ S 
Sbjct: 176 LTRAIINDFPEYYHYFSQKWLTYNNIKQPNRNRLLWRDGSADGLKTGHTEEAGYCLIASA 235

Query: 257 RYKDDPIVAVVMGMPTSQER--DQKAL 281
           +  +  +++VVMG PT  ER  D +AL
Sbjct: 236 KRNNMRLISVVMGAPTDSERADDSEAL 262


>gi|30249456|ref|NP_841526.1| D-alanyl-D-alanine carboxypeptidase [Nitrosomonas europaea ATCC
           19718]
 gi|30138819|emb|CAD85396.1| D-alanyl-D-alanine carboxypeptidase 1 (S11) family [Nitrosomonas
           europaea ATCC 19718]
          Length = 385

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 147/261 (56%), Gaps = 6/261 (2%)

Query: 30  LMGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQDEPRY-PASLTKM 83
           LM + +F   ++ +++     +P+      S I+ID + +Q         R  PASLTK+
Sbjct: 12  LMKQFIFSLFLLATISPAWSQQPELAVAAKSFILIDFHSSQTLASSNPHERLDPASLTKL 71

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT Y++F  LQ +++ ++  +PVS  +     S+++++     T ++ I  +I +S ND 
Sbjct: 72  MTAYVVFSALQQERIKIDQVVPVSNRSWRMVGSRMFIEPNKQVTVDELIHGVIVQSGNDA 131

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
             A  E I+GSE  F  +M+ +AK++GM NT + N++GL   +  +TA D A+L   + +
Sbjct: 132 CVALAELIAGSEDLFVHMMNEEAKRLGMHNTHFTNSTGLTHSDHYSTAHDLALLAAAIIR 191

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           +FP+ Y  +S+R++ Y      N N+LL    N+DG+KTG+T  +G+ +VTS +     +
Sbjct: 192 DFPERYPLYSLREYTYNGITQQNRNRLLWTDPNVDGMKTGWTEAAGYCLVTSAKRDQRRL 251

Query: 264 VAVVMGMPTSQERDQKALELI 284
           ++VVMG  +   R  ++  L+
Sbjct: 252 ISVVMGTASPNARSIESQRLL 272


>gi|29654563|ref|NP_820255.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii
           RSA 493]
 gi|154706869|ref|YP_001424698.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii
           Dugway 5J108-111]
 gi|161830325|ref|YP_001597113.1| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii RSA 331]
 gi|29541831|gb|AAO90769.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii
           RSA 493]
 gi|154356155|gb|ABS77617.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii
           Dugway 5J108-111]
 gi|161762192|gb|ABX77834.1| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii RSA 331]
          Length = 418

 Score =  149 bits (375), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 76/207 (36%), Positives = 122/207 (58%), Gaps = 2/207 (0%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MTLY+ F+ L+S ++HL+ +  VS  A     S+++LKE         I  +I
Sbjct: 90  PASLTKLMTLYVTFQALKSAQIHLDDKAKVSVKAWRTGGSRMFLKEGAEVPVNLLIQGII 149

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND      ++I G+E  FA +M+  A ++GM+N+ Y +++GL   +  +T  D A+
Sbjct: 150 VASGNDACVTMAQYIGGTEPSFAQMMNQTAARLGMKNSHYVDSTGLPRPDHYSTPYDMAV 209

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   +  +FP+YY YFS +   Y N    N N+LL +  + DG+KTG+T  +G+ ++ S 
Sbjct: 210 LTRAIINDFPEYYHYFSQKWLTYNNIKQPNRNRLLWRDGSADGLKTGHTEEAGYCLIASA 269

Query: 257 RYKDDPIVAVVMGMPTSQER--DQKAL 281
           +  +  +++VVMG PT  ER  D +AL
Sbjct: 270 KRNNMRLISVVMGAPTDSERADDSEAL 296


>gi|148261820|ref|YP_001235947.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidiphilium cryptum
           JF-5]
 gi|146403501|gb|ABQ32028.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidiphilium cryptum
           JF-5]
          Length = 453

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/199 (39%), Positives = 118/199 (59%), Gaps = 1/199 (0%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           R+PASLTK+MTL + F  L   +L+ NT +PVS  AA+  P KL L      T  Q +L 
Sbjct: 92  RFPASLTKLMTLDLAFHALSHGRLNANTPLPVSPAAASVQPVKLNLVAGQTVTVMQAMLG 151

Query: 135 LITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           + T SAND +TA G+++ G S ++ A  M+ +A  +GM+ + ++N SGL + NQ+T A D
Sbjct: 152 MTTLSANDAATALGQYLGGGSIRRVAAEMTARAHALGMERSEFRNPSGLPNPNQVTDAYD 211

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            AIL   L  ++PQY   FS+  FR+  R I N + +L + +   G+KTGYT  + FN+V
Sbjct: 212 MAILARHLLLDYPQYRYLFSVPSFRFEGRTIPNIDGMLKRYNGAIGMKTGYTDLARFNLV 271

Query: 254 TSLRYKDDPIVAVVMGMPT 272
           T+       ++ V M  P+
Sbjct: 272 TAAVRNGHMLIGVEMHAPS 290


>gi|332971504|gb|EGK10454.1| serine-type D-Ala-D-Ala carboxypeptidase [Kingella kingae ATCC
           23330]
          Length = 432

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 74/213 (34%), Positives = 129/213 (60%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D+   PASLTK+MT Y++F+ L++KK+  +     S+ A  Q  S+++L+     + +  
Sbjct: 102 DQKIEPASLTKVMTAYLVFQALENKKITPDQTTKTSEHAWRQAGSRMFLELGKPVSVQDL 161

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  L+ + AND + +  E ++GSE +F  LM+ +AK++GM NT + NA+GL  +  +TT 
Sbjct: 162 VHGLVVQLANDAAVSLAELLAGSEAEFVALMNAEAKRLGMTNTHFDNATGLSSQTHLTTV 221

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +D AIL   L ++FPQYYK +S + F Y      N N LL +  NIDG+  GYT + G+N
Sbjct: 222 KDLAILSNALIRDFPQYYKIYSTKSFTYNTITQQNRNLLLFRDDNIDGLAAGYTNSGGYN 281

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           ++ S +     ++++V G  +++ R  ++ +L+
Sbjct: 282 LIASSKRDGRRVLSIVAGAASAESRATESSKLL 314


>gi|212212357|ref|YP_002303293.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii
           CbuG_Q212]
 gi|212010767|gb|ACJ18148.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii
           CbuG_Q212]
          Length = 418

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 76/207 (36%), Positives = 122/207 (58%), Gaps = 2/207 (0%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MTLY+ F+ L+S ++HL+ +  VS  A     S+++LKE         I  +I
Sbjct: 90  PASLTKLMTLYVTFQALKSAQIHLDDKAKVSIKAWRTGGSRMFLKEGAEVPVNLLIQGII 149

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND      ++I G+E  FA +M+  A ++GM+N+ Y +++GL   +  +T  D A+
Sbjct: 150 VASGNDACVTMAQYIGGTEPSFAQMMNQTAARLGMKNSHYVDSTGLPRPDHYSTPYDMAV 209

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   +  +FP+YY YFS +   Y N    N N+LL +  + DG+KTG+T  +G+ ++ S 
Sbjct: 210 LTRAIINDFPEYYHYFSQKWLTYNNIKQPNRNRLLWRDGSADGLKTGHTEEAGYCLIASA 269

Query: 257 RYKDDPIVAVVMGMPTSQER--DQKAL 281
           +  +  +++VVMG PT  ER  D +AL
Sbjct: 270 KRNNMRLISVVMGAPTDSERADDSEAL 296


>gi|326405324|ref|YP_004285406.1| putative peptidase S11 [Acidiphilium multivorum AIU301]
 gi|325052186|dbj|BAJ82524.1| putative peptidase S11 [Acidiphilium multivorum AIU301]
          Length = 453

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/199 (39%), Positives = 118/199 (59%), Gaps = 1/199 (0%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           R+PASLTK+MTL + F  L   +L+ NT +PVS  AA+  P KL L      T  Q +L 
Sbjct: 92  RFPASLTKLMTLDLAFHALSHGRLNANTPLPVSPAAASVQPVKLNLVAGQTVTVMQAMLG 151

Query: 135 LITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           + T SAND +TA G+++ G S ++ A  M+ +A  +GM+ + ++N SGL + NQ+T A D
Sbjct: 152 MTTLSANDAATALGQYLGGGSIRRVAAEMTARAHALGMERSEFRNPSGLPNPNQVTDAYD 211

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            AIL   L  ++PQY   FS+  FR+  R I N + +L + +   G+KTGYT  + FN+V
Sbjct: 212 MAILARHLLLDYPQYRYLFSVPSFRFEGRTIPNIDGMLKRYNGAIGMKTGYTDLARFNLV 271

Query: 254 TSLRYKDDPIVAVVMGMPT 272
           T+       ++ V M  P+
Sbjct: 272 TAAVRNGHMLIGVEMHAPS 290


>gi|300113196|ref|YP_003759771.1| beta-lactamase [Nitrosococcus watsonii C-113]
 gi|299539133|gb|ADJ27450.1| Beta-lactamase [Nitrosococcus watsonii C-113]
          Length = 389

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 155/287 (54%), Gaps = 15/287 (5%)

Query: 2   LQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSS---IV 58
           +Q KI +    +FL   Y S+           +LFL       +  + A P  S+   ++
Sbjct: 1   MQPKINAMKSCSFLLPWYCSL-----------LLFLGGEAWGQSLPIPAPPSLSAKAYLL 49

Query: 59  IDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
            D    ++    Q DE   PAS+TK+MT Y++F+ L+  ++HL  ++ +S+ A     S+
Sbjct: 50  QDFATGRVLAEHQADERIEPASITKLMTAYVVFKELKQGRIHLADEVLISEKAWRTGGSR 109

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
            +++  T    E  I  +I +S ND S A  E++ G+E+ FA LM+ +A+ +GM  + + 
Sbjct: 110 TFIEVNTRVPVETLIKGMIIQSGNDASVALAEYVGGTEEIFAALMNQQAQLLGMTGSHFV 169

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNI 237
           N++GL  +N   TARD A LG  +  +FP+YY ++S + F Y      N N LL +  ++
Sbjct: 170 NSTGLPHENHYMTARDIATLGRAIILDFPKYYDWYSEQAFTYNGITQYNRNLLLRRDSSV 229

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           DG KTG+T ++G+ + +S       ++AVVMG  + + R Q++L L+
Sbjct: 230 DGFKTGHTNSAGYCLASSAMRDGMRLIAVVMGTGSPKIRMQESLALL 276


>gi|85714340|ref|ZP_01045328.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
           sp. Nb-311A]
 gi|85698787|gb|EAQ36656.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
           sp. Nb-311A]
          Length = 499

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 121/220 (55%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           P YPAS+TK+MT Y+    ++  ++ L+T + VS TAA Q+PSK+  +  T  T +  + 
Sbjct: 88  PWYPASITKLMTAYVTLTAVKHGRITLDTLLTVSPTAAAQSPSKMGFRPGTRVTVDNALK 147

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            ++ +SAND++    E + GS   F+  M+  A+++GM  T Y N +GL    QI++ARD
Sbjct: 148 MMLVKSANDMAVVLAEGVGGSIDGFSAEMNAAAQRLGMTQTSYVNPNGLPADGQISSARD 207

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            AIL      + P+Y  +  I   RY  R+  N NKL+ +    DG KTG+   SG+N+V
Sbjct: 208 IAILARAFIHDLPEYEYFVHIPSIRYGRRVTHNFNKLIGRFPGADGFKTGFICASGYNLV 267

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
            S       ++AVV+G  +   R  +A +++       TL
Sbjct: 268 ASATQNGKRLIAVVLGASSGTMRAVRAAQMLERGFANNTL 307


>gi|120609035|ref|YP_968713.1| penicillin-binding protein 6 [Acidovorax citrulli AAC00-1]
 gi|120587499|gb|ABM30939.1| penicillin-binding protein 6 [Acidovorax citrulli AAC00-1]
          Length = 393

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 138/238 (57%), Gaps = 11/238 (4%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +++DV   Q+   K  D P   ASLTK+MT Y++F+ L++KK+ L  ++PVS+ A     
Sbjct: 44  LLLDVTAGQVLAAKDIDAPVEQASLTKLMTGYLVFDALRAKKITLEQRLPVSERAWKMPG 103

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S++++  K     E  I  +I +S ND + A  E + G+ + F  LM+++A+ +GM+NT 
Sbjct: 104 SRMFIDPKMQVPVEDLIKGMIVQSGNDATMALAEGVGGTAENFVKLMNDQARALGMKNTA 163

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII---TNHNKLLN 232
           YKN  GL +    TTARD ++L   L K+FP+Y  Y+S + + Y        TN N LL 
Sbjct: 164 YKNPEGLTEPGHTTTARDLSVLATRLMKDFPEYMHYYSTKHYAYPGTPPSNGTNRNALLF 223

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDP------IVAVVMGMPTSQERDQKALELI 284
           +   +DG+KTG+T  +G+ +V + + +D P      ++++V+G  +   R  ++ +L+
Sbjct: 224 RDPTVDGLKTGHTAAAGYCLVATSK-RDFPNIGQRRLLSIVLGAASESARANESQKLL 280


>gi|116748745|ref|YP_845432.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697809|gb|ABK16997.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Syntrophobacter fumaroxidans MPOB]
          Length = 422

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/232 (34%), Positives = 137/232 (59%), Gaps = 3/232 (1%)

Query: 55  SSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S+I+++V+   +  F+Q  DE   PAS TK+ +LY++FE L+  ++HLN +I +S+ A  
Sbjct: 39  SAILMEVSTGAIL-FEQNADEVIEPASFTKIASLYLVFEALRQGRIHLNDEIWISEAAWR 97

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK+++   T    E+ +  +   S ND   A  E +SGS + F   M+ K +++GM 
Sbjct: 98  TGGSKMFVGVGTKVPLEELLKGIAVVSGNDACVAAAEHVSGSAETFVEAMNRKTRELGMT 157

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           ++ + N  GL  + Q TTARD AIL     + FP+  +Y S+R++ Y N +  N N LL 
Sbjct: 158 HSRFLNPHGLPVEGQTTTARDMAILDSAYLRQFPESLQYHSMREYTYNNIVQYNRNHLLL 217

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           K  ++DG+KTGY   +G+++  + +     ++AVVMG  T   R+++AL+L+
Sbjct: 218 KDPSVDGLKTGYVAAAGYHLAATAKRDGMRLLAVVMGAGTPAVREREALKLL 269


>gi|120601649|ref|YP_966049.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio vulgaris
           DP4]
 gi|120561878|gb|ABM27622.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Desulfovibrio vulgaris DP4]
          Length = 441

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 141/259 (54%), Gaps = 6/259 (2%)

Query: 31  MGKILFLSIIMISMASELHAKPK---YSSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMT 85
           +G +L +   +++     HA  +    S+ +ID N  ++  F+Q  D    PASLTK+++
Sbjct: 17  LGIVLLVLTFVVASVCGAHASERLNVVSAFLIDQNSRRVL-FEQNADAQIPPASLTKVIS 75

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           +Y+  +++++ K  L  ++ +S  AA    S+++L      + ++ ++ +   S ND S 
Sbjct: 76  MYVALDHIRAGKASLADKVKISARAARTGGSRMFLTRGETVSLDELLMGMAVSSGNDASV 135

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E I+GS  +F  LM+ KA+ +GM  T ++N +GL    Q TTARD   L +      
Sbjct: 136 AVAEHIAGSTDRFVQLMNAKARALGMTETTFRNVNGLPAAGQKTTARDMGKLAVNYLTAH 195

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           PQ  +Y S R  R+   I TN N +L      DG+KTG+   SG+N++++++  +  +VA
Sbjct: 196 PQALRYHSTRFIRHNKVITTNKNPMLGNCEGADGLKTGWVCASGYNLISTVKRGNTRLVA 255

Query: 266 VVMGMPTSQERDQKALELI 284
           VV+G   SQ R Q+   LI
Sbjct: 256 VVLGAENSQVRGQEMNRLI 274


>gi|311693499|gb|ADP96372.1| serine-type D-Ala-D-Ala carboxypeptidase [marine bacterium HP15]
          Length = 374

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 143/257 (55%), Gaps = 13/257 (5%)

Query: 28  IQLMGKILFLSIIM-----ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTK 82
           + L GK +  S+++     I+ +S +   PK   I+++ N +        E   PASLTK
Sbjct: 4   LALTGKAMSQSVLIPSPPQIAGSSYVLMDPKSGRIIMEENSH--------ERLPPASLTK 55

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           MMT YI+   L   ++ ++  +P+S  A     S+ +++E T  + E  +  +I +S ND
Sbjct: 56  MMTAYIVERELDEGRIAMSDMVPISVNAWKTEGSRTFVREGTQVSVEDLLRGVIIQSGND 115

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            S A  EF++GSE  F  +M+ +A+ +GM++T + NA+GL      +TA D A+L   + 
Sbjct: 116 ASVALAEFVAGSEGAFVDIMNQQAQLLGMKDTNFVNATGLPSPEHFSTAYDLAMLARAII 175

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
            ++P+ Y  ++ + F Y N    N N LL +  ++DG+KTG+T  +G+ +V S +  D  
Sbjct: 176 NDYPENYPLYAEKHFTYNNIRQPNRNSLLWRDDSVDGLKTGHTEEAGYCLVASAKRNDTR 235

Query: 263 IVAVVMGMPTSQERDQK 279
            +AVVMG  +S+ R Q+
Sbjct: 236 FIAVVMGTNSSEARAQE 252


>gi|295694696|ref|YP_003587934.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM
           2912]
 gi|295410298|gb|ADG04790.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM
           2912]
          Length = 405

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/233 (34%), Positives = 127/233 (54%), Gaps = 3/233 (1%)

Query: 55  SSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D    Q+   K  D+ RYPAS+TKMMTLY+ FE +   K HL+  +P+S+ A   
Sbjct: 48  SAVLMDAATGQILYEKGADDKRYPASMTKMMTLYLTFEAIHDGKAHLDDIVPISQNAYNT 107

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S++YL  +  FT +  I  +   SAND + A  E++ GS  +F   M+ KA+++G+  
Sbjct: 108 GGSEVYLDPREKFTLKDMITFVAVHSANDAAVAIAEYVGGSVGQFVKRMNEKAQELGLTQ 167

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--ITNHNKLL 231
           T + N  GLHD N  TTA D AIL   L   +P+   Y  I     RN    ++  N LL
Sbjct: 168 THFVNPDGLHDPNHYTTAMDMAILARDLITKYPEVLDYTKIHDMWIRNHTFNVSATNNLL 227

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            K   +DG+KTG+T  +G+ +  + +     +++V+M  P  Q R +    L+
Sbjct: 228 GKYPGMDGLKTGFTDQAGYCLTATAQQGGVRLISVIMKDPDDQSRQKDTTALL 280


>gi|241661811|ref|YP_002980171.1| serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia pickettii 12D]
 gi|240863838|gb|ACS61499.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia pickettii 12D]
          Length = 400

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/240 (35%), Positives = 143/240 (59%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S ++ DV   Q + G   DE   PASLTK+MT Y++FE ++  KL  +  I  ++T  T 
Sbjct: 46  SWMLTDVTSGQVLGGANMDERIEPASLTKLMTAYLVFEAVRDGKLKYDQMITPTETVRTV 105

Query: 113 -QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S+++L+     +  +    LI +S ND +    E + G+E  F +LM+ +A+++GM
Sbjct: 106 KTDESRMFLEAGKPASVREMTQGLIIQSGNDAALVLAEAVGGTETNFVMLMNREAERLGM 165

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT + NA+GL D N  +TARD +IL   L K+FPQ YK++S ++F Y N   +N N+LL
Sbjct: 166 KNTHFANAAGLPDPNHYSTARDLSILTAALIKDFPQDYKFYSQKEFTYNNIKQSNRNRLL 225

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLR--YKDDP-----IVAVVMGMPTSQERDQKALELI 284
                +DG KTG+T+++G+ +VTS      D P     +++V++G  +   R Q++L+++
Sbjct: 226 WLDPTVDGGKTGHTKSAGYCLVTSANRPLPDVPGANRRLLSVIIGTKSDAIRTQESLKVL 285


>gi|237734435|ref|ZP_04564916.1| D-alanyl-D-alanine carboxypeptidase [Mollicutes bacterium D7]
 gi|229382665|gb|EEO32756.1| D-alanyl-D-alanine carboxypeptidase [Coprobacillus sp. D7]
          Length = 390

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 111/339 (32%), Positives = 180/339 (53%), Gaps = 32/339 (9%)

Query: 21  SIYIQRNIQLMGKILF-LSIIMISMASELHA-----KPKY-SSIVIDVNKNQMTGFKQDE 73
            I I+  I+LM K+L  L ++ +   S + A      P   S+I+I+ N  Q+   K  E
Sbjct: 2   DILIREAIKLMKKLLITLLVVCLLPISRVQALDNDVTPNAKSAILIEANSRQILYDKNAE 61

Query: 74  PR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
            + YPAS TK+MT+ ++FE L++KK+  + +I  SK AA+   S++YL+     + +   
Sbjct: 62  EKLYPASTTKIMTMILMFEALRNKKISFDDEITTSKYAASMGGSQVYLEVGESLSLKDMF 121

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
            ++   SAND S A  E I+GS  KF  +M++KAKK+G++NT +KNA+GLHD +  T A 
Sbjct: 122 KSIAIASANDASVAVAEHIAGSINKFVEMMNDKAKKLGLKNTHFKNATGLHDPDHYTCAH 181

Query: 193 DQAILGILL-----RKNFPQYYKYFS-IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           D AI+   L        F     Y S IR+   ++  + N NKLL   + +DG+KTGYT+
Sbjct: 182 DLAIMAAYLIEIGGEDLFAVTSLYDSYIREDTKQSFWLVNTNKLLKLYNGVDGLKTGYTK 241

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI---------TSFLEKKTLKHQQ 297
            +G+ +VT+ +     I+ V+M     + R+++   L+          +  +K TL  Q 
Sbjct: 242 EAGYCLVTTAQRDGQRIIGVLMKETAPKTRNEEMCSLLDYGFNNYKQVTIFKKDTLIEQH 301

Query: 298 -THRKDNLS-STSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
              + DNL+     KK ++       Y++ K  DAK  +
Sbjct: 302 LVDKMDNLTIDVKCKKDIV-------YTKAKSADAKVST 333


>gi|187927291|ref|YP_001897778.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia pickettii 12J]
 gi|309780010|ref|ZP_07674763.1| serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia sp. 5_7_47FAA]
 gi|187724181|gb|ACD25346.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia pickettii 12J]
 gi|308921180|gb|EFP66824.1| serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia sp. 5_7_47FAA]
          Length = 400

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/240 (35%), Positives = 143/240 (59%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S ++ DV   Q + G   DE   PASLTK+MT Y++FE ++  KL  +  I  ++T  T 
Sbjct: 46  SWMLTDVTSGQVLGGANMDERIEPASLTKLMTAYLVFEAVRDGKLKYDQMITPTETVRTV 105

Query: 113 -QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S+++L+     +  +    LI +S ND +    E + G+E  F +LM+ +A+++GM
Sbjct: 106 KTDESRMFLEAGKPASVREMTQGLIIQSGNDAALVLAEAVGGTETNFVMLMNREAERLGM 165

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT + NA+GL D N  +TARD +IL   L K+FPQ YK++S ++F Y N   +N N+LL
Sbjct: 166 KNTHFANAAGLPDPNHYSTARDLSILTAALIKDFPQDYKFYSQKEFTYNNIKQSNRNRLL 225

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLR--YKDDP-----IVAVVMGMPTSQERDQKALELI 284
                +DG KTG+T+++G+ +VTS      D P     +++V++G  +   R Q++L+++
Sbjct: 226 WLDPTVDGGKTGHTKSAGYCLVTSANRPLPDVPGANRRLLSVIIGTKSDAIRTQESLKVL 285


>gi|221134237|ref|ZP_03560542.1| D-alanyl-D-alanine carboxypeptidase [Glaciecola sp. HTCC2999]
          Length = 385

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/247 (35%), Positives = 144/247 (58%), Gaps = 10/247 (4%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSK 96
           ++++I  A  + AK     I++D N   +   +  D    PASLTK+MT+Y+I + LQ+ 
Sbjct: 19  AVVIIPPAPSVAAK---GYILLDANTGDVIAEQNADMQLAPASLTKIMTMYVIGQELQAG 75

Query: 97  KLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            + L  ++ +S+ A  +N    SK++++  T  +    +  ++ +S ND   A  E I+G
Sbjct: 76  NIALTDEVIISENAWAKNFPDSSKMFIEVGTRVSVSDLMHGIVVQSGNDACVAMAEHIAG 135

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           SE+ FA +M+  A K+GM  T + NA GLHD    T+ RD A+L   L K+ P+ Y+ +S
Sbjct: 136 SEEAFASMMNAHAAKLGMTATNFVNAHGLHDSQHFTSPRDMAVLSRALIKDNPEEYELYS 195

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F Y N    N N LL +K  ++DGIKTG+T ++G++++TS    D  +V+VVMG  T
Sbjct: 196 KKEFTYNNIRQYNRNSLLWDKALSVDGIKTGHTSDAGYSLITSATQGDMRLVSVVMG--T 253

Query: 273 SQERDQK 279
             ER +K
Sbjct: 254 DSERARK 260


>gi|296537403|ref|ZP_06899250.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis
           ATCC 49957]
 gi|296262269|gb|EFH09047.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis
           ATCC 49957]
          Length = 375

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 129/213 (60%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   P+S++K+MT+Y++F+ L+  +L L+  +PVS+ A     SK++++  +  + E  
Sbjct: 49  DERMPPSSMSKLMTMYVVFDLLKQGRLRLDQTLPVSERAWRMGGSKMFVELGSAVSVENL 108

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
              +I +S ND      E ISGSE++FA L++  A+K+G+ ++ ++NA+G  D     TA
Sbjct: 109 ARGVIIQSGNDACIVLAEGISGSEQQFAELLNEYARKLGLNDSTFRNATGWPDPEHRMTA 168

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           RD A L   L  +FPQY+ ++S R F++      N N LL ++   DG+KTG+T ++G+ 
Sbjct: 169 RDLATLARHLINDFPQYFAFYSERSFQWNGINQENRNPLLGRVPGADGLKTGHTEDAGYG 228

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +  +++  D  ++ VV G+ + + R +++  L+
Sbjct: 229 LTGTVKRGDRRLILVVNGLTSMRARGEESERLM 261


>gi|325982907|ref|YP_004295309.1| beta-lactamase [Nitrosomonas sp. AL212]
 gi|325532426|gb|ADZ27147.1| Beta-lactamase [Nitrosomonas sp. AL212]
          Length = 373

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 126/208 (60%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT Y++F  L+  +L LN    VS++A     S+++++     T ++ I  +I
Sbjct: 53  PASLTKLMTAYVVFSALKQGQLALNQTAVVSESAWRMIGSRMFIEPNKQVTVDELIRGMI 112

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND   A  E ++GSE  F I+M+ +AK++GMQNT + N +GL D    TTA D  +
Sbjct: 113 VQSGNDACIALAETVAGSEANFVIIMNKEAKRLGMQNTHFTNTTGLPDPGHYTTAHDLTL 172

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   + ++FP +Y  +S++++ Y N    N N+LL    ++DG+KTG+T+ +G+ ++TS 
Sbjct: 173 LATAIIRDFPDFYPLYSLKEYTYNNITQPNRNRLLWIDPHVDGMKTGWTKAAGYCLITSA 232

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELI 284
                 +++V++G  ++  R  ++  L+
Sbjct: 233 IRDKRRLISVIIGAKSANARSIESQRLL 260


>gi|326315218|ref|YP_004232890.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372054|gb|ADX44323.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 393

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 82/238 (34%), Positives = 136/238 (57%), Gaps = 11/238 (4%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +++DV   Q+   K  D P   ASLTK+MT Y++F+ L S+K+ L  ++PVS  A     
Sbjct: 44  LLLDVTSGQVLAAKDIDAPVEQASLTKLMTGYLVFDALSSRKITLEQKLPVSVLAWKMPG 103

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S++++  K     +  +  +I +S ND S A  E + GS + F  LM+++AK +GM+NT 
Sbjct: 104 SRMFIDPKMQVPVDDLLKGMIVQSGNDASMALAEGVGGSAENFVKLMNDQAKALGMKNTA 163

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII---TNHNKLLN 232
           YKN  GL +    TTARD +IL   L K+FP+Y  Y+S + + Y        TN N LL 
Sbjct: 164 YKNPEGLTEPGHTTTARDLSILATRLMKDFPEYMHYYSTKHYAYPGTPPSNGTNRNSLLF 223

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDP------IVAVVMGMPTSQERDQKALELI 284
           +   +DG+KTG+T  +G+ +V + + +D P      ++++V+G  +   R  ++ +L+
Sbjct: 224 RDPTVDGLKTGHTAAAGYCLVATSK-RDFPNVGQRRLLSIVLGTASENARANESQKLL 280


>gi|315122117|ref|YP_004062606.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495519|gb|ADR52118.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 282

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 128/222 (57%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D+   PASLTK+MT Y++F +L+ KK+ L T I +SK A+ Q PS    K+ +  T +  
Sbjct: 55  DKLWNPASLTKLMTAYVVFSFLEQKKITLETPITISKNASEQPPSNSTFKKGSILTLDNA 114

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  LI +SAND++ A  E +  +E++F   M++ A+ +G+  T + N+ G+      TTA
Sbjct: 115 LKLLIVKSANDIAVAIAESLCNTEEEFVKHMNDSAQTLGLLRTKFMNSHGVVQNGHYTTA 174

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           RD  IL   ++ +F QY  YF I+  + +N+   N N  +      DG+KTG+T  SGFN
Sbjct: 175 RDMTILSWRIKTHFSQYAHYFQIKGLKIKNKKYPNTNWAIGIFLGADGMKTGFTCASGFN 234

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
           IV S    +  ++ VV+G      R+Q + +L+++  +KK +
Sbjct: 235 IVASASQGNRSLITVVLGALDRDSRNQISEKLLSAGFDKKNI 276


>gi|254472024|ref|ZP_05085425.1| D-alanyl-D-alanine carboxypeptidase protein [Pseudovibrio sp.
           JE062]
 gi|211959226|gb|EEA94425.1| D-alanyl-D-alanine carboxypeptidase protein [Pseudovibrio sp.
           JE062]
          Length = 352

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/251 (34%), Positives = 142/251 (56%), Gaps = 4/251 (1%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFEYLQ 94
           L +I+IS  S L       S++++++  Q   + +D  +P YPAS TK+MT  + FE L 
Sbjct: 15  LGLILISYGS-LAPASATPSLLLNLD-TQSVLYAEDAGDPWYPASTTKLMTALVTFEALA 72

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
           ++++   T + +S  A  Q   K  LK  +  T +  I A++  SANDV+ A  E ++GS
Sbjct: 73  NREIDHETSVVMSPWAMRQASLKSGLKVGSVMTLQDAIYAVLVGSANDVAVALAESVAGS 132

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           E+ F   M+  A+++GM  + + NA+GL D  Q T+ARD A+L   +   +PQY+  F+ 
Sbjct: 133 EEAFVQRMNATARRLGMTASHFANANGLFDATQQTSARDLAVLAREIYLGYPQYHDVFAT 192

Query: 215 RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
            K     + IT+ N+LL ++    G+KTG+  +SG NIV          +AVV+G  T +
Sbjct: 193 SKVTIDGKAITSFNELLTRLPGTVGMKTGFVCSSGRNIVALTDRGGQRYMAVVLGATTGR 252

Query: 275 ERDQKALELIT 285
           ER ++A +L+T
Sbjct: 253 ERSERAAKLLT 263


>gi|146329552|ref|YP_001209791.1| D-alanyl-D-alanine carboxypeptidase [Dichelobacter nodosus
           VCS1703A]
 gi|146233022|gb|ABQ14000.1| D-alanyl-D-alanine carboxypeptidase [Dichelobacter nodosus
           VCS1703A]
          Length = 375

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 139/257 (54%), Gaps = 5/257 (1%)

Query: 33  KILFLSIIMISMASELHAKPK----YSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLY 87
           K  F+++ ++         P      S +++D    Q+   +  DE   PAS+TK+MT Y
Sbjct: 6   KCCFVTVFLLFFGVRAEVPPPDLPVKSYLLMDAQSGQILAERAADERLPPASITKLMTAY 65

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + F  L++ K+HL   + +S  A  QN S+++++  +  +    +  +I +S ND S A 
Sbjct: 66  VTFNALKTGKIHLTDLVTISANARAQNGSRMFVEVNSQVSVNDLLQGMIVQSGNDASVAL 125

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E+I G+   F  +M+  AK++ +Q T Y+N +G+ D+   +TA D A L   L ++FP+
Sbjct: 126 AEYIGGTVAGFVHMMNATAKQLDLQKTHYQNPTGMPDEQHFSTAHDIARLAQALIRDFPE 185

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           +Y ++  ++F + N    N N+LL +  N+DG+KTGYT  +G+ +  S +  D  ++ VV
Sbjct: 186 FYHFYQQKEFTWNNIKQPNRNRLLWRNQNVDGLKTGYTDAAGYCLAASEKRGDWRLIGVV 245

Query: 268 MGMPTSQERDQKALELI 284
           +G     +R   A  L+
Sbjct: 246 LGAEKEAQRYDAAENLL 262


>gi|89902561|ref|YP_525032.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodoferax ferrireducens
           T118]
 gi|89347298|gb|ABD71501.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Rhodoferax ferrireducens T118]
          Length = 394

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 138/237 (58%), Gaps = 9/237 (3%)

Query: 30  LMGKILF--LSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           +M K+L    + + +S++++    P+ ++   ++ D+  NQ    K  D P   ASLTK+
Sbjct: 1   MMKKLLLTLAAAMCLSVSAQTPQPPEIAARSYLLFDITANQFLAEKDIDSPVEQASLTKL 60

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT YI+F+ L+SKK+ L   +PVS+ A     S++++  K     E  +  +I +S ND 
Sbjct: 61  MTAYIVFDALRSKKIDLKQMLPVSEHAWKMPGSRMFIDPKMKVPVEDLLKGMIVQSGNDA 120

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           + A  E + G+ ++F  LM+ +AK +GM++T YKN  GL +    TTARD +IL   L +
Sbjct: 121 TMALAEGVGGTVERFVQLMNEQAKALGMKSTNYKNPEGLTEAGHTTTARDLSILATRLMR 180

Query: 204 NFPQYYKYFSIRKFRYRNRII---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
           +FP Y  Y++I+++RY        +N N LL +   +DG+KTG+T  +G+ ++ + +
Sbjct: 181 DFPDYVAYYAIKQYRYPGTPAANGSNRNLLLFRDPTVDGLKTGHTDAAGYCLIATAK 237


>gi|77166090|ref|YP_344615.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrosococcus oceani ATCC
           19707]
 gi|254435823|ref|ZP_05049330.1| D-alanyl-D-alanine carboxypeptidase family [Nitrosococcus oceani
           AFC27]
 gi|76884404|gb|ABA59085.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Nitrosococcus oceani ATCC 19707]
 gi|207088934|gb|EDZ66206.1| D-alanyl-D-alanine carboxypeptidase family [Nitrosococcus oceani
           AFC27]
          Length = 382

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/215 (34%), Positives = 128/215 (59%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE 129
           + DE   PAS+TK+MT Y++F+ L+  ++HL  ++ +S+ A     S+ +++  T    E
Sbjct: 55  QADERIEPASITKLMTAYVVFKELKQGRIHLADEVLISEKAWRTGGSRTFIEVNTRVPVE 114

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
             I  +I +S ND S A  E + G+E+ FA LM+ +A+ +GM  + + N++GL   N   
Sbjct: 115 TLIKGMIIQSGNDASVALAEHVGGTEEIFAALMNQQAQLLGMTGSHFVNSTGLPHSNHYM 174

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
           TARD A LG  + ++FP+YY ++S + F Y      N N LL +  ++DG KTG+T ++G
Sbjct: 175 TARDIATLGRAIIRDFPKYYSWYSEQAFTYNGITQYNRNLLLRRDSSVDGFKTGHTNSAG 234

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           + + +S       ++AVVMG  + + R Q++L L+
Sbjct: 235 YCLASSAMRDGMRLIAVVMGTGSPKIRAQESLALL 269


>gi|300692700|ref|YP_003753695.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
           [Ralstonia solanacearum PSI07]
 gi|299079760|emb|CBJ52436.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
           [Ralstonia solanacearum PSI07]
          Length = 397

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/240 (33%), Positives = 144/240 (60%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           + ++ DV   Q + G   DE   PASLTK+MT Y+ FE ++  KL  +  +  ++T  + 
Sbjct: 43  AWMLTDVTSGQVLGGGNMDERIEPASLTKLMTAYLAFEAVRDGKLKYDQMVTPTETVRSV 102

Query: 113 -QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S+++L+        + +  LI +S ND +    E + G+E  F +LM+ +A+++GM
Sbjct: 103 KTDESRMFLQAGKPAAVRELLQGLIVQSGNDAALVLAEAVGGTEANFVMLMNREAERLGM 162

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT + NA+GL D N  TTARD +IL   L ++FP+ YK++S ++F Y N    N N+LL
Sbjct: 163 KNTHFMNAAGLPDPNHYTTARDLSILTTALIRDFPEDYKFYSQKEFTYNNIKQPNRNRLL 222

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLR--YKDDP-----IVAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+++G+ ++TS +    D P     +++V++G  + Q R Q++L+++
Sbjct: 223 WIDPTVDGVKTGHTKSAGYCLITSAKRPLPDMPNASRRLLSVMIGTKSEQVRTQESLKVL 282


>gi|187922505|ref|YP_001894147.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia phytofirmans
           PsJN]
 gi|187713699|gb|ACD14923.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia phytofirmans
           PsJN]
          Length = 409

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 139/240 (57%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D   NQ +     DE   PASLTK+MT Y++FE LQ+KK++++  +  S+     
Sbjct: 54  SWVLVDATSNQVLASGNPDERVEPASLTKLMTAYLVFEALQTKKINMDQTVMPSEAVRRV 113

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S+++++     T    +  +I +S ND + A  E + GSE +F  +M+N+A+K+GM
Sbjct: 114 RTDESRMFIEANKPVTVHDLVYGMIIQSGNDAAIALAELVGGSESQFVNMMNNEAQKLGM 173

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT + + +G+ D    TTA D A+L   L ++FP YY  FS+++F Y      N N+LL
Sbjct: 174 KNTHFADVNGMPDPQHYTTAGDLAVLSARLIRDFPDYYNIFSVKEFTYNKIKQPNRNRLL 233

Query: 232 NKMHNIDGIKTGYTRNSGFNIVT----SLRYKDDP---IVAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++     SL    D    +V+V+MG     +R Q +L+++
Sbjct: 234 WIDPTVDGLKTGHTQAAGYCLIASAKRSLPGATDASRRLVSVMMGETKEHDRVQDSLKML 293


>gi|319761132|ref|YP_004125069.1| beta-lactamase [Alicycliphilus denitrificans BC]
 gi|330822990|ref|YP_004386293.1| beta-lactamase [Alicycliphilus denitrificans K601]
 gi|317115693|gb|ADU98181.1| Beta-lactamase [Alicycliphilus denitrificans BC]
 gi|329308362|gb|AEB82777.1| Beta-lactamase [Alicycliphilus denitrificans K601]
          Length = 387

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 138/238 (57%), Gaps = 11/238 (4%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +++DV   Q+   K  D P   ASLTK+MT Y++F+ L++KK+ L  ++PVS+ A     
Sbjct: 38  LLVDVTAGQVLAAKDIDAPVEQASLTKLMTGYLVFDALRAKKITLEQRLPVSERAWKMPG 97

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S++++  K     +  +  +I +S ND + A  E + G+ + F  LM+ +AK +GM+NT 
Sbjct: 98  SRMFIDPKMQVPVDDLLKGMIVQSGNDATMALAEGVGGTAENFVRLMNEQAKALGMKNTA 157

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT---NHNKLLN 232
           YKN  GL +    TTARD A L   L ++FP+Y  Y+S +++RY     +   N N LL 
Sbjct: 158 YKNPEGLTEPGHTTTARDLATLATRLIQDFPEYMHYYSTKQYRYEGTPASNSNNRNTLLF 217

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDP------IVAVVMGMPTSQERDQKALELI 284
           +   +DG+KTG+T  +G+ +V + + +D P      ++++V+G  +   R  ++ +L+
Sbjct: 218 RDPTVDGLKTGHTAAAGYCLVATSK-RDFPNVGQRRLLSIVLGAASENSRANESQKLL 274


>gi|304310091|ref|YP_003809689.1| Penicillin-binding protein 5 precursor
           (D-ala-D-ala-carboxypeptidase) [gamma proteobacterium
           HdN1]
 gi|301795824|emb|CBL44023.1| Penicillin-binding protein 5 precursor
           (D-ala-D-ala-carboxypeptidase) [gamma proteobacterium
           HdN1]
          Length = 385

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/267 (34%), Positives = 149/267 (55%), Gaps = 9/267 (3%)

Query: 28  IQLMGKILFLSIIMISMAS-----ELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPA 78
           I  +   LF+  +  S AS     EL   P+ ++   I+I+ +  Q +     DE   PA
Sbjct: 2   IGFIANTLFIGALTASNASFAAETELPTPPQLAASSWILIEPSSGQVLVEHNADEQLPPA 61

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           SLTKMMT Y+  + ++      + ++ VS+ A     SK++++  T       +  +I +
Sbjct: 62  SLTKMMTSYVAADKIKEGLAGWDDEVLVSEKAWRMGGSKMFIRVGTQVKIRDLMRGIIIQ 121

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND S A  E I+GSE+ FA LM+  AK+IGM +T Y NA+GL D +  TTARD AIL 
Sbjct: 122 SGNDASVALAEHIAGSEESFADLMNQTAKRIGMTHTHYVNATGLPDPSHYTTARDLAILA 181

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             +  + P+ Y+ +S ++F Y N    N N LL + +++DGIKTG+T+ +G+ +V S + 
Sbjct: 182 QHVIFDHPEDYELYSEKEFLYNNIKQPNRNLLLWRDNSVDGIKTGHTKEAGYCLVASAKR 241

Query: 259 KDDPIVAVVMGMPTSQERDQKALELIT 285
               +VAVVM   + + R  + ++L+T
Sbjct: 242 DGMRLVAVVMNTNSEKARASETMKLLT 268


>gi|164685962|ref|ZP_01946170.2| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212218675|ref|YP_002305462.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii
           CbuK_Q154]
 gi|164601484|gb|EAX33225.2| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212012937|gb|ACJ20317.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii
           CbuK_Q154]
          Length = 418

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 76/207 (36%), Positives = 121/207 (58%), Gaps = 2/207 (0%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MTLY+ F+ L+S ++HL+ +  VS  A     S+++LKE         I  +I
Sbjct: 90  PASLTKLMTLYVTFQALKSAQIHLDDKAKVSVKAWRTGGSRMFLKEGAEVPVNLLIQGII 149

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND      ++I G+E  FA +M+  A ++GM+N+ Y +++GL   +  +T  D A 
Sbjct: 150 VASGNDACVTMAQYIGGTEPSFAQMMNQTAARLGMKNSHYVDSTGLPRPDHYSTPYDMAA 209

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   +  +FP+YY YFS +   Y N    N N+LL +  + DG+KTG+T  +G+ ++ S 
Sbjct: 210 LTRAIINDFPEYYHYFSQKWLTYNNIKQPNRNRLLWRDGSADGLKTGHTEEAGYCLIASA 269

Query: 257 RYKDDPIVAVVMGMPTSQER--DQKAL 281
           +  +  +++VVMG PT  ER  D +AL
Sbjct: 270 KRNNMRLISVVMGAPTDSERADDSEAL 296


>gi|297180929|gb|ADI17133.1| d-alanyl-d-alanine carboxypeptidase [uncultured gamma
           proteobacterium HF0070_03O15]
          Length = 370

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/210 (37%), Positives = 122/210 (58%), Gaps = 3/210 (1%)

Query: 63  KNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKE 122
           K  +  F  D P  PASLTK+MT Y++ +Y++   + L     +S  A     S+++++E
Sbjct: 29  KKVLASFNADAPVEPASLTKLMTSYVVADYIKEDFIDLTDTPKISINAWKTPGSRMFIRE 88

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
            T     + I  +I +S ND S A  E ++GSE+ F+ LM+  A+++GM+NT + NASGL
Sbjct: 89  STKVPVSELIKGMIIQSGNDASVALAEHVAGSEENFSYLMNEYARELGMENTSFNNASGL 148

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL---NKMHNIDG 239
            D   +T+A D A+L   L KNFP +Y+++S + F Y      N N+LL   N     DG
Sbjct: 149 PDPLNVTSANDLAVLTGELIKNFPDHYRHYSQKSFTYAGIAQKNRNQLLWRDNTSITFDG 208

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           +KTGYT ++G+ +V S       +VAVV+G
Sbjct: 209 VKTGYTESAGYCLVGSAVKDGMRLVAVVLG 238


>gi|110834820|ref|YP_693679.1| D-alanyl-D-alanine-carboxypeptidase [Alcanivorax borkumensis SK2]
 gi|110647931|emb|CAL17407.1| D-alanyl-D-alanine-carboxypeptidase [Alcanivorax borkumensis SK2]
          Length = 386

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/246 (33%), Positives = 137/246 (55%), Gaps = 4/246 (1%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLH 99
           M+  A ++ AK     +++D    Q+   +  + R P ASLTKMMT YI    LQ   + 
Sbjct: 29  MVPRAPQIDAK---GYLLMDATSGQIIVERNADQRLPPASLTKMMTAYIAEAELQKGNIS 85

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
                P+S  A     S+++++E T       +  +I +S ND S A  E+I+GSE  FA
Sbjct: 86  EKDMAPISVQAWQMGGSRMFVREGTRVPVGDLLRGIIIQSGNDASVAMAEYIAGSEDAFA 145

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            LM+  A ++GM N+ + NA+G   +N  TTA+D AIL   + ++FP +Y  ++ ++F Y
Sbjct: 146 DLMNQHANRLGMDNSHFMNATGWPAENHFTTAKDMAILARAIVRDFPDHYDLYAKKEFTY 205

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
                 N N LL +  ++DG+KTG+T  +G+ +V+S +     ++AVVMG  +   R ++
Sbjct: 206 NGITQQNRNLLLWRDPSVDGLKTGHTDEAGYCLVSSAKKDGMRLIAVVMGTDSEGARARE 265

Query: 280 ALELIT 285
           + +L+T
Sbjct: 266 SQKLLT 271


>gi|312113074|ref|YP_004010670.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311218203|gb|ADP69571.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 367

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 121/227 (53%), Gaps = 9/227 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D P  PASLTK+MT Y+ FE ++  +L     +  +  + +Q PSK  L        +  
Sbjct: 48  DLPWRPASLTKLMTAYLTFEAIRDGRLSPEDMLTSTALSRSQPPSKFGLPLGAQIKVDLA 107

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ---- 187
           I ALI +SANDV+    E I GS + F   M+  AK++GM NT + N +GL   N     
Sbjct: 108 IKALIVKSANDVAIMLAEKIGGSSEAFVDQMNRTAKRLGMTNTKFVNPNGLPQFNPDGTE 167

Query: 188 -----ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKT 242
                +TTARD A+L  ++ K FPQY   FS+ + R  NR++T+HN +L      DG+KT
Sbjct: 168 TPEQAVTTARDMALLSNMILKEFPQYTPIFSMTEVRVGNRLLTSHNGILKSYDGADGMKT 227

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           G+   +G+N+V S       +VAVV+G  +S  R  +A  L     E
Sbjct: 228 GFVCAAGYNVVASATRNGRQLVAVVLGERSSGARTIRAAALFEHGFE 274


>gi|161523591|ref|YP_001578603.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia multivorans
           ATCC 17616]
 gi|221199887|ref|ZP_03572930.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans
           CGD2M]
 gi|221207444|ref|ZP_03580453.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans CGD2]
 gi|160341020|gb|ABX14106.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia multivorans
           ATCC 17616]
 gi|221172647|gb|EEE05085.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans CGD2]
 gi|221180126|gb|EEE12530.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans
           CGD2M]
          Length = 438

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 138/243 (56%), Gaps = 16/243 (6%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D   N  +     DE   PASLTK+MT Y++FE L  KK+ +   +  S+     
Sbjct: 83  SWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSEAVRRV 142

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+++A+++GM
Sbjct: 143 GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVTMMNDEAQRLGM 202

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           + T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F+Y N    N N+LL
Sbjct: 203 KGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFKYNNIRQGNRNRLL 262

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI----------VAVVMGMPTSQERDQKAL 281
                +DG+KTG+T+ +GF +++S +    PI          VAV+MG P   +R Q ++
Sbjct: 263 WLDPTVDGLKTGHTQAAGFCLISSAKR---PIPGASDAQRRLVAVMMGEPKESDRTQDSM 319

Query: 282 ELI 284
           +++
Sbjct: 320 KML 322


>gi|189351640|ref|YP_001947268.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans ATCC
           17616]
 gi|189335662|dbj|BAG44732.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans ATCC
           17616]
          Length = 410

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 138/243 (56%), Gaps = 16/243 (6%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D   N  +     DE   PASLTK+MT Y++FE L  KK+ +   +  S+     
Sbjct: 55  SWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSEAVRRV 114

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+++A+++GM
Sbjct: 115 GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVTMMNDEAQRLGM 174

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           + T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F+Y N    N N+LL
Sbjct: 175 KGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFKYNNIRQGNRNRLL 234

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI----------VAVVMGMPTSQERDQKAL 281
                +DG+KTG+T+ +GF +++S +    PI          VAV+MG P   +R Q ++
Sbjct: 235 WLDPTVDGLKTGHTQAAGFCLISSAKR---PIPGASDAQRRLVAVMMGEPKESDRTQDSM 291

Query: 282 ELI 284
           +++
Sbjct: 292 KML 294


>gi|221211096|ref|ZP_03584075.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans CGD1]
 gi|221168457|gb|EEE00925.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans CGD1]
          Length = 438

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 138/243 (56%), Gaps = 16/243 (6%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D   N  +     DE   PASLTK+MT Y++FE L  KK+ +   +  S+     
Sbjct: 83  SWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSEAVRRV 142

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+++A+++GM
Sbjct: 143 GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVTMMNDEAQRLGM 202

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           + T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F+Y N    N N+LL
Sbjct: 203 KGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFKYNNIRQGNRNRLL 262

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI----------VAVVMGMPTSQERDQKAL 281
                +DG+KTG+T+ +GF +++S +    PI          VAV+MG P   +R Q ++
Sbjct: 263 WLDPTVDGLKTGHTQAAGFCLISSAKR---PIPGASDAQRRLVAVMMGEPKESDRTQDSM 319

Query: 282 ELI 284
           +++
Sbjct: 320 KML 322


>gi|253997624|ref|YP_003049688.1| beta-lactamase [Methylotenera mobilis JLW8]
 gi|253984303|gb|ACT49161.1| Beta-lactamase [Methylotenera mobilis JLW8]
          Length = 392

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 75/209 (35%), Positives = 130/209 (62%), Gaps = 1/209 (0%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT Y+ F+ +++  L LN  +PVS+ A     SK++++     T ++ +  +I
Sbjct: 71  PASLTKIMTAYLAFKAVKNGHLQLNQTLPVSEHAWKTEGSKMFIEPNKPATVDELLHGMI 130

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND S    E I+ SE  FA +M+ +A+++GM+NT Y NA+GL D    TTA D A 
Sbjct: 131 IVSGNDASITLAEGIASSEPLFAQMMNKEAERLGMKNTHYMNATGLPDPQHYTTAEDLAT 190

Query: 197 LGILLRKNFPQYYK-YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           L + L ++FP+ YK  +S++++ Y N    N N+LL    N+DG+KTG+T ++G+ ++++
Sbjct: 191 LAMALIRDFPEEYKRLYSVKEYAYNNIKQPNRNRLLWLDPNVDGMKTGHTESAGYCLIST 250

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +  +   ++V++G PT   R  ++ +L+
Sbjct: 251 AKRDNTRYISVILGAPTDTARATESQKLL 279


>gi|167585315|ref|ZP_02377703.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ubonensis
           Bu]
          Length = 438

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 82/242 (33%), Positives = 143/242 (59%), Gaps = 14/242 (5%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S +++D   N  +     DE   PASLTK+MT Y++FE L  KK+ +  QI V+ +AA +
Sbjct: 83  SWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISME-QI-VTPSAAVR 140

Query: 114 ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
               + S+++++     +    +  +I +S ND + A  E + GSE +F  +M+++AK++
Sbjct: 141 RVGTDESRMFIEADKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNDEAKRL 200

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM+ T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F+Y N    N N+
Sbjct: 201 GMKGTHFADVNGMPDPNHYTTAGDLATLSAHLIRDFPQYYGIFSEKEFKYNNIRQGNRNR 260

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYK-----DDP--IVAVVMGMPTSQERDQKALE 282
           LL     +DG+KTG+T+ +GF +++S + +     D P  +V+V+MG     +R Q +++
Sbjct: 261 LLWLDPTVDGLKTGHTQAAGFCLISSAKRQMPGTADAPRRLVSVMMGETKESDRTQDSMK 320

Query: 283 LI 284
           ++
Sbjct: 321 ML 322


>gi|78485976|ref|YP_391901.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thiomicrospira crunogena
           XCL-2]
 gi|78364262|gb|ABB42227.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Thiomicrospira crunogena XCL-2]
          Length = 396

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 135/229 (58%), Gaps = 1/229 (0%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           I+ID N  ++      E R  PASLTK+MT Y++   L +  +HL+  + +S  A     
Sbjct: 47  ILIDFNSGKIIASNHPEMRVEPASLTKIMTGYVVINELANGNIHLDDMVTISPKAWKMPG 106

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           SK++++     + +  I  ++ +S ND S A  E I+GSE+ FA LM+  A  +GM  T 
Sbjct: 107 SKMFIEVGKKVSVKNLIKGMVIQSGNDASVALAEHIAGSEEVFAELMNKYAASLGMDGTH 166

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           Y NA+GL + +  TTA+D +IL   L   FP+ YK+++ +KF +      N NKLL +  
Sbjct: 167 YMNATGLPNPDHYTTAQDLSILARALITKFPEEYKWYAQKKFTFNGITQYNRNKLLWQDP 226

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           ++DG+KTG+T ++G+ +V S +  D  +++VV+G   ++ R Q++ +L+
Sbjct: 227 SVDGLKTGHTESAGYCLVASAKRDDMRLISVVLGTDGAKTRIQESQKLL 275


>gi|331005765|ref|ZP_08329124.1| D-alanyl-D-alanine carboxypeptidase [gamma proteobacterium
           IMCC1989]
 gi|330420402|gb|EGG94709.1| D-alanyl-D-alanine carboxypeptidase [gamma proteobacterium
           IMCC1989]
          Length = 386

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 88/258 (34%), Positives = 146/258 (56%), Gaps = 6/258 (2%)

Query: 34  ILFLSIIMISMASE--LHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLY 87
           IL  S++M+S A    + A P+ ++    ++D N  ++   K  D    PAS+TKMMT Y
Sbjct: 11  ILSCSVVMLSYARPVIIPAPPQLAATAYFLMDTNTGRVLVEKNADMQLPPASMTKMMTSY 70

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           I+   ++   ++ +  + +S  A  +  SK++++E T  + +  +  +I +S ND S A 
Sbjct: 71  IVSSEIERGSINPDDLVTISVKAWKKGGSKMFVREGTQVSIKDLLRGVIIQSGNDASIAL 130

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E I+GSE  FA +M+ +A  +GM NT++KNA+G      I++ RD AILG  L K+FP+
Sbjct: 131 AEHIAGSEAAFADIMNQQAALLGMTNTVFKNATGWPADGHISSVRDLAILGQALIKDFPE 190

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           +YK +S + F Y      N NKLL    ++DGIKTG+T  +GF +  S       +V+VV
Sbjct: 191 HYKLYSEKYFTYNGINQPNRNKLLFTDKSVDGIKTGHTEEAGFGLTASSERDGMRLVSVV 250

Query: 268 MGMPTSQERDQKALELIT 285
            G  +   R  ++ +L++
Sbjct: 251 TGTRSESARAAESQKLLS 268


>gi|299530593|ref|ZP_07044011.1| serine-type D-Ala-D-Ala carboxypeptidase [Comamonas testosteroni
           S44]
 gi|298721416|gb|EFI62355.1| serine-type D-Ala-D-Ala carboxypeptidase [Comamonas testosteroni
           S44]
          Length = 390

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 140/238 (58%), Gaps = 11/238 (4%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +++DV   Q+ G K  D P   ASLTK+M+ Y++F+ L+SKK+ L  ++PVS+ A     
Sbjct: 40  LLVDVTAGQVLGAKDVDAPVEQASLTKLMSAYVVFDALRSKKITLEQRMPVSERAWKMPG 99

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S++++  K        +  +I +S ND + A  E + G+ + F  +M+++AK +GM+NT 
Sbjct: 100 SRMFIDPKMQVPVNDLLSGMIIQSGNDATMALAEAVGGTAENFVKMMNDQAKALGMKNTS 159

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII---TNHNKLLN 232
           YKN  GL +   +TTARD +IL   L  +FP+Y  Y++ +++ Y        +N N LL 
Sbjct: 160 YKNPEGLTEPGHLTTARDLSILAQRLMHDFPEYMHYYATKQYSYPGTPASNGSNRNALLF 219

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDP------IVAVVMGMPTSQERDQKALELI 284
           +   +DG+KTG+T  +G+ +V + + +D P      ++++V+G  + + R  ++ +L+
Sbjct: 220 RDPTVDGLKTGHTNAAGYCLVATAK-RDLPNVGQRRLLSIVLGTASEKARANESQKLL 276


>gi|221069456|ref|ZP_03545561.1| Serine-type D-Ala-D-Ala carboxypeptidase [Comamonas testosteroni
           KF-1]
 gi|220714479|gb|EED69847.1| Serine-type D-Ala-D-Ala carboxypeptidase [Comamonas testosteroni
           KF-1]
          Length = 390

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 140/238 (58%), Gaps = 11/238 (4%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +++DV   Q+ G K  D P   ASLTK+M+ Y++F+ L++KK+ L  ++PVS+ A     
Sbjct: 40  LLVDVTAGQVLGAKDIDAPVEQASLTKLMSAYVVFDALRAKKITLEQRMPVSERAWKMPG 99

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S++++  K        +  +I +S ND + A  E + G+ + F  +M+++AK +GM+NT 
Sbjct: 100 SRMFIDPKMQVPVNDLLSGMIIQSGNDATMALAEAVGGTAENFVKMMNDQAKALGMKNTS 159

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII---TNHNKLLN 232
           YKN  GL +   +TTARD +IL   L  +FP+Y  Y+S +++ Y        +N N LL 
Sbjct: 160 YKNPEGLTEPGHLTTARDLSILAQRLMHDFPEYMHYYSTKQYSYPGTPASNGSNRNALLF 219

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDP------IVAVVMGMPTSQERDQKALELI 284
           +   +DG+KTG+T  +G+ +V + + +D P      ++++V+G  + + R  ++ +L+
Sbjct: 220 RDPTVDGLKTGHTNAAGYCLVATAK-RDLPNVGQRRLLSIVLGTASEKARANESQKLL 276


>gi|319944900|ref|ZP_08019162.1| D-alanyl-D-alanine carboxypeptidase DacA [Lautropia mirabilis ATCC
           51599]
 gi|319741470|gb|EFV93895.1| D-alanyl-D-alanine carboxypeptidase DacA [Lautropia mirabilis ATCC
           51599]
          Length = 411

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 86/244 (35%), Positives = 141/244 (57%), Gaps = 15/244 (6%)

Query: 55  SSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S  + DV+ N +  + Q  DE   PASLTK+MT Y++FE L+   L+++T+ PVS+ A  
Sbjct: 55  SWFLFDVSTNTVL-YSQAPDERVEPASLTKLMTAYVVFEALRDGTLNMDTRPPVSQAAYK 113

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S++++  +   T E+ +  LI +S ND +    E +SGSE+ FA  M+ +A++IGM+
Sbjct: 114 AIGSRMFVDPRKPATVEELLHGLIIQSGNDAAIILAEAVSGSEEAFAQQMNAEARRIGMK 173

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           N+ + NASGL      +TARD A+L   + K FP YY+ +S +++ +      N N+LL 
Sbjct: 174 NSHFVNASGLPAPEHYSTARDMALLATRIIKEFPDYYRMYSEKEYTFNGVRQPNRNRLLY 233

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSL----RYKDDP--------IVAVVMGMPTSQERDQKA 280
              ++DG+KTG+T  +G+ +V S     R   DP        I++V+MG  T   R  ++
Sbjct: 234 IDPSVDGMKTGHTDAAGYCLVASAHREQRNAADPNGSPFSRRILSVLMGATTDATRATES 293

Query: 281 LELI 284
            +L+
Sbjct: 294 QKLL 297


>gi|254491459|ref|ZP_05104638.1| beta-lactamase, putative [Methylophaga thiooxidans DMS010]
 gi|224462937|gb|EEF79207.1| beta-lactamase, putative [Methylophaga thiooxydans DMS010]
          Length = 382

 Score =  146 bits (368), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 72/212 (33%), Positives = 130/212 (61%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   PAS+TK+MT Y++   L +  + L+ ++ +S+ A     S+ +++  T  + E  
Sbjct: 56  DERLPPASITKLMTSYVVSHELHAGNIQLDDEVLISEKAWRMVGSRSFIEVNTKVSVEAL 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +I +S ND + A  E I+GSE+ FA +M+  A+++GM  T Y+NA+GL D +  TTA
Sbjct: 116 LRGMIVQSGNDAAVALAEHIAGSEETFAQMMNQYAQQLGMYGTNYRNATGLPDPDHYTTA 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           RD A+L   L ++FP +Y+++S +++ Y +    N NKLL + +++DG+KTG+T  +G+ 
Sbjct: 176 RDIAVLSAALIRDFPAHYEWYSEKEYTYNDITQHNRNKLLWRDNSVDGLKTGHTEEAGYC 235

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           +  S +     +++VV+G  +   R Q+  +L
Sbjct: 236 LAASAKRSGMRLISVVLGTRSENARAQETQKL 267


>gi|120555321|ref|YP_959672.1| Serine-type D-Ala-D-Ala carboxypeptidase [Marinobacter aquaeolei
           VT8]
 gi|120325170|gb|ABM19485.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Marinobacter aquaeolei VT8]
          Length = 391

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 139/246 (56%), Gaps = 8/246 (3%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYL 93
           +L  S   I+ +S +   P    ++++ N N        E   PASLTKMMT YI+   L
Sbjct: 32  VLIPSPPQIAGSSWVLMDPLSGRVIMEHNSN--------ERLPPASLTKMMTAYIVEREL 83

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
              ++ ++  +P+S  A     S+ +++E T  + E  +  +I +S ND S A  EF++G
Sbjct: 84  DEGRISMSDMVPISVKAWRTEGSRTFVQEGTSVSVEDLLKGVIIQSGNDASVALAEFVAG 143

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           SE  F  +M+ +A+ +GM++T ++NA+GL   +  +TA D A+L   + +++P+ Y  ++
Sbjct: 144 SEGAFVDIMNQQAQLLGMKDTHFENATGLPSADHFSTAYDLAVLARHIIQDYPENYPLYA 203

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            + F Y N    N N LL +  ++DG+KTG+T  +G+ +V S +  +  ++A VMG  +S
Sbjct: 204 QKHFTYNNIRQPNRNSLLWRDDSVDGLKTGHTEEAGYCLVASAKRGETRLIATVMGTSSS 263

Query: 274 QERDQK 279
           + R Q+
Sbjct: 264 EARAQE 269


>gi|260777069|ref|ZP_05885963.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606735|gb|EEX33009.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 394

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 84/245 (34%), Positives = 140/245 (57%), Gaps = 8/245 (3%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A +++AK     +V+D +  Q+   +  D P  PASLTK+MT Y++ + + + +L  + +
Sbjct: 27  APQINAK---GYVVMDYHSGQVVASQNPDTPLAPASLTKLMTAYVVGQEINAGRLSWDDK 83

Query: 104 IPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
             +S+ A + N   PSK+++K     +    +L +I +S ND S A  E ++GSE  F  
Sbjct: 84  ATISRNAWSVNFPEPSKMFIKPGDEISIRNLMLGVIVQSGNDASVALAEHVAGSESAFVS 143

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
           LM+   + +GM+NT + NA GL   N  TT +D A L   + K+ P+ YK +  +KF + 
Sbjct: 144 LMNGWTQTLGMENTQFINAHGLDGDNIQTTPKDMANLMRAIIKDVPEVYKLYQEKKFTWN 203

Query: 221 NRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           +    N NKLL ++  N+DG KTGYT N+G+++V+S       +++VVMG P+ Q R   
Sbjct: 204 DIEQYNRNKLLWDRSLNVDGGKTGYTENAGYSLVSSATEGRMRLISVVMGTPSQQARTSA 263

Query: 280 ALELI 284
           +  L+
Sbjct: 264 SRNLL 268


>gi|241766088|ref|ZP_04764001.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidovorax delafieldii
           2AN]
 gi|241363892|gb|EER59198.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidovorax delafieldii
           2AN]
          Length = 406

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 138/238 (57%), Gaps = 11/238 (4%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +++DV  NQ+   K  D P   ASLTK+MT Y++F+ L++KK+ L  ++PVS  A     
Sbjct: 57  MLVDVTANQILAAKDIDAPVEQASLTKLMTGYLVFDALRAKKITLEQKLPVSVRAWKMPG 116

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S++++  K     +  +  +I +S ND + A  E + G+ + F  LM+++A+ +GM+NT 
Sbjct: 117 SRMFIDPKMQVAVDDLLKGMIVQSGNDATMALAEGVGGTAENFVKLMNDQAQALGMKNTA 176

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK---LLN 232
           YKN  GL +    TTARD A L   L K+FP+Y  Y+S +++ Y     +N N    LL 
Sbjct: 177 YKNPEGLTEPGHTTTARDLATLASRLMKDFPEYMHYYSTKQYSYPGTPASNGNNRNMLLF 236

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDP------IVAVVMGMPTSQERDQKALELI 284
           +   +DG+KTG+T  +G+ +V + + +D P      ++++V+G  +   R  ++ +L+
Sbjct: 237 RDPTVDGLKTGHTAAAGYCLVATSK-RDFPNVGQRRLLSIVLGAASENARANESQKLL 293


>gi|289209131|ref|YP_003461197.1| beta-lactamase [Thioalkalivibrio sp. K90mix]
 gi|288944762|gb|ADC72461.1| Beta-lactamase [Thioalkalivibrio sp. K90mix]
          Length = 415

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 80/236 (33%), Positives = 137/236 (58%), Gaps = 8/236 (3%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           S  S++ AK   S  ++D +   M   ++ D  R PASLTK+MT Y++F  ++  +L L 
Sbjct: 48  SPPSDVTAK---SYALMDFDSGLMLASREADVDREPASLTKLMTAYVVFGEIRDGRLGLE 104

Query: 102 TQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
             + +S+ A     +  S+++++       E  +  +I +S ND STA  E ++GSE  F
Sbjct: 105 DTVTISERAWRTGMRGASRMFIEVGDEVKVEDLLRGMIIQSGNDASTALAEAVAGSEGAF 164

Query: 159 AILMSNKAKKIGMQNTIYKNASGL-HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
             +M+N+A+++GM  + + N+ GL  D+ Q T+A+D A+L   L + FP  Y Y+S R F
Sbjct: 165 VDMMNNQARELGMTRSYFTNSHGLPSDEPQSTSAQDMALLARALIREFPDLYGYYSERSF 224

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            + +   +N N LL +    DG+KTG+T  +G+N+V+S +  D  ++AVV+G+  S
Sbjct: 225 EFNDISQSNRNMLLWRDAGFDGLKTGWTSAAGYNLVSSAKRSDRRLIAVVLGIEAS 280


>gi|167755687|ref|ZP_02427814.1| hypothetical protein CLORAM_01202 [Clostridium ramosum DSM 1402]
 gi|167704626|gb|EDS19205.1| hypothetical protein CLORAM_01202 [Clostridium ramosum DSM 1402]
          Length = 379

 Score =  145 bits (366), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 100/298 (33%), Positives = 162/298 (54%), Gaps = 25/298 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+I+ N  Q+   K  E + YPAS TK+MT+ ++FE L++KK+  + +I  SK AA+ 
Sbjct: 32  SAILIEANSRQILYDKNAEEKLYPASTTKIMTMILMFEALRNKKISFDDEITTSKYAASM 91

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S++YL+     + +    ++   SAND S A  E I+GS  KF  +M++KAKK+G++N
Sbjct: 92  GGSQVYLEVGESLSLKDMFKSIAIASANDASVAVAEHIAGSINKFVEMMNDKAKKLGLKN 151

Query: 174 TIYKNASGLHDKNQITTARDQAILGILL-----RKNFPQYYKYFS-IRKFRYRNRIITNH 227
           T +KNA+GLHD +  T A D AI+   L        F     Y S IR+   ++  + N 
Sbjct: 152 THFKNATGLHDPDHYTCAHDLAIMAAYLIEIGGEDLFAVTSLYDSYIREDTKQSFWLVNT 211

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI--- 284
           NKLL   + +DG+KTGYT+ +G+ +VT+ +     I+ V+M     + R+++   L+   
Sbjct: 212 NKLLKLYNGVDGLKTGYTKEAGYCLVTTAQRDGQRIIGVLMKETAPKTRNEEMCSLLDYG 271

Query: 285 ------TSFLEKKTLKHQQ-THRKDNLS-STSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
                  +  +K TL  Q    + DNL+     KK ++       Y++ K  DAK  +
Sbjct: 272 FNNYKQVTIFKKDTLIEQHLVDKMDNLTIDVKCKKDIV-------YTKAKSADAKVST 322


>gi|121592706|ref|YP_984602.1| penicillin-binding protein 6 [Acidovorax sp. JS42]
 gi|120604786|gb|ABM40526.1| penicillin-binding protein 6 [Acidovorax sp. JS42]
          Length = 387

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 138/238 (57%), Gaps = 11/238 (4%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +++DV   Q+   K  D P   ASLTK+MT Y++F+ L++KK+ L  ++PVS+ A     
Sbjct: 38  MLVDVTAGQVLATKDIDAPVEQASLTKLMTGYLVFDALRAKKITLEQRLPVSERAWKMPG 97

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S++++  K     +  +  +I +S ND + A  E + G+ + F  LM+ +AK +GM NT 
Sbjct: 98  SRMFIDPKMQVPVDDLLKGMIVQSGNDATVALAEGVGGTVENFVRLMNEQAKALGMTNTA 157

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK---LLN 232
           YKN  GL +    TTARD A L   L ++FP+Y  Y+S +++RY     +N N    LL 
Sbjct: 158 YKNPEGLTEPGHTTTARDLATLATRLMQDFPEYMHYYSTKQYRYEGTPASNSNNRNMLLF 217

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDP------IVAVVMGMPTSQERDQKALELI 284
           +  ++DG+KTG+T  +G+ +V + + ++ P      ++++V+G  +   R  ++ +L+
Sbjct: 218 RDPSVDGLKTGHTAAAGYCLVATSK-REFPNVGQRRLLSIVLGAASENARANESQKLL 274


>gi|46202335|ref|ZP_00208483.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 404

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 142/266 (53%), Gaps = 2/266 (0%)

Query: 48  LHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
           + A+P  +S+ +D+    +    +   P +PASLTKMMT Y+ F  +++ K+  +  I V
Sbjct: 13  VRAEPS-ASLAVDLGSGTVIAESRGGMPHHPASLTKMMTAYVAFGAIKAGKVSQDDIITV 71

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
           S+ AA+Q  + L L      +    + A+I RSAND + A  E ++GSE  FA+ M+ +A
Sbjct: 72  SERAASQGGATLDLGPGERISLGAALKAMIVRSANDAAVAVAEHVAGSESAFAVRMTEEA 131

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
            ++GM ++ ++NA+G+     +++ RD AIL + + ++FP +   FS R   ++ R++  
Sbjct: 132 ARLGMTSSSFRNATGMTAAGHVSSPRDMAILAMAIERDFPAFRPMFSSRDTTWKGRVLPT 191

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            N  L      +G+KTG+T ++G+N+V          +AVVMG  +S ER      L+  
Sbjct: 192 VNGFLGAYAGAEGMKTGFTCSAGYNLVAIAHRGGRRALAVVMGAGSSAERLGAIRRLMDQ 251

Query: 287 FLEKKTLKHQQTHRKDNLSSTSLKKS 312
            L+ +    +      N+  T   +S
Sbjct: 252 ALQAEPATGRSLAGLGNVGGTPPDRS 277


>gi|85706300|ref|ZP_01037394.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius sp. 217]
 gi|85669073|gb|EAQ23940.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius sp. 217]
          Length = 387

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 141/257 (54%), Gaps = 9/257 (3%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEY 92
           +L L + +   A E  AK  +   V+DV    +   K  D    PAS++K+MTLY+ FE 
Sbjct: 11  LLCLGVALPVQAFETSAKAAF---VMDVTTGTVLLDKNADTALPPASMSKLMTLYVAFEA 67

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           ++S +L L+ ++PVS+ A +   S ++L        E  +  +I  S ND      E +S
Sbjct: 68  VRSGRLTLDERLPVSEHAMSYGGSTMFLDTTDRVRVEDLLRGIIVLSGNDACAVIAEALS 127

Query: 153 --GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
             G+E  FA  M+ +A+++GM N++++NASG   +  + + RD A+L   + ++FP +YK
Sbjct: 128 PDGTEAGFARFMTQRAQQMGMTNSMFRNASGWPAEGHVMSVRDLALLARHIIEDFPDFYK 187

Query: 211 YFSIRKFRYRNRI---ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            F+  +FR+  R    I N N LL      DG+KTG+T  +GF +  S    D  ++ V+
Sbjct: 188 MFAETEFRFDGRAPSNINNRNPLLGLGIGADGLKTGHTEQAGFGLTGSAIQGDRRVIFVI 247

Query: 268 MGMPTSQERDQKALELI 284
            G+ T+Q+R +++  ++
Sbjct: 248 SGLATTQDRARESEAIV 264


>gi|222109487|ref|YP_002551751.1| serine-type d-ala-d-ala carboxypeptidase [Acidovorax ebreus TPSY]
 gi|221728931|gb|ACM31751.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidovorax ebreus TPSY]
          Length = 387

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 138/238 (57%), Gaps = 11/238 (4%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +++DV   Q+   K  D P   ASLTK+MT Y++F+ L++KK+ L  ++PVS+ A     
Sbjct: 38  MLVDVTAGQVLATKDIDAPVEQASLTKLMTGYLVFDALRAKKITLEQRLPVSERAWKMPG 97

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S++++  K     +  +  +I +S ND + A  E + G+ + F  LM+ +AK +GM NT 
Sbjct: 98  SRMFIDPKMQVPVDDLLKGMIVQSGNDATVALAEGVGGTVENFVRLMNEQAKALGMTNTA 157

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK---LLN 232
           YKN  GL +    TTARD A L   L ++FP+Y  Y+S +++RY     +N N    LL 
Sbjct: 158 YKNPEGLTEPGHTTTARDLATLATRLMQDFPEYMHYYSTKQYRYEGTPASNSNNRNMLLF 217

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDP------IVAVVMGMPTSQERDQKALELI 284
           +  ++DG+KTG+T  +G+ +V + + ++ P      ++++V+G  +   R  ++ +L+
Sbjct: 218 RDPSVDGLKTGHTAAAGYCLVATSK-REFPNVGQRRLLSIVLGAASENARANESQKLL 274


>gi|254251303|ref|ZP_04944621.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia dolosa
           AUO158]
 gi|124893912|gb|EAY67792.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia dolosa
           AUO158]
          Length = 460

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 140/241 (58%), Gaps = 12/241 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D   N  +     DE   PASLTK+MT Y++FE L  KK+ +   +  S+     
Sbjct: 105 SWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSEAVRRV 164

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+++A+++GM
Sbjct: 165 GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVTMMNDEAQRLGM 224

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F+Y N    N N+LL
Sbjct: 225 KSTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFKYNNIRQGNRNRLL 284

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP--------IVAVVMGMPTSQERDQKALEL 283
                +DG+KTG+T+ +G+ +++S + +  P        +VAV+MG P   +R Q ++++
Sbjct: 285 WLDPTVDGLKTGHTQAAGYCLISSAK-RAIPGTADAQRRLVAVMMGEPKESDRTQDSMKM 343

Query: 284 I 284
           +
Sbjct: 344 L 344


>gi|224825266|ref|ZP_03698371.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lutiella nitroferrum
           2002]
 gi|224602187|gb|EEG08365.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lutiella nitroferrum
           2002]
          Length = 380

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 142/257 (55%), Gaps = 4/257 (1%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEY 92
           + F +   +    E+  K  Y   ++D    Q+      + R  PASLTK+MT Y+ ++ 
Sbjct: 18  VSFANAPFVPPVPEIAGKAYY---LVDFYSGQVVASSDPDKRIAPASLTKLMTGYLTYKA 74

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           ++ K+L L+ ++ VS    T   S+++L  K   + +  I  +  +S ND      E I+
Sbjct: 75  IKEKRLTLDQKLTVSHKGWTTGGSRMFLDPKIPVSVDDLIKGMDVQSGNDACVTLAEAIA 134

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           GSE+ F  +M+ +A+++GM NT ++NA+GL +    TT  D  IL   + + +P++YK +
Sbjct: 135 GSEEAFGQMMTAEARRLGMNNTQFRNATGLPNPEHYTTVHDLGILASAIIREYPEFYKTY 194

Query: 213 SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           S++ F Y      N N LL +  N+DG+KTG+T ++G+N+V S R     +++VV+G  +
Sbjct: 195 SLKSFTYNGISQPNRNLLLYRDPNVDGMKTGFTDDAGYNMVASSRRDGRRVISVVVGTAS 254

Query: 273 SQERDQKALELITSFLE 289
            + R  ++ +L+   L+
Sbjct: 255 PEARAVESSKLLNYGLQ 271


>gi|126726756|ref|ZP_01742596.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodobacterales
           bacterium HTCC2150]
 gi|126704085|gb|EBA03178.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodobacterales
           bacterium HTCC2150]
          Length = 374

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/253 (33%), Positives = 137/253 (54%), Gaps = 5/253 (1%)

Query: 39  IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKK 97
           +I   + ++  A P  S+ VIDV+   +   K  D P  PAS++K+MTL ++FE L   +
Sbjct: 1   MIAAPLLAQNFATPARSAFVIDVSSGTVLLSKDADIPLPPASMSKLMTLNMLFEALVDGR 60

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           + L+    VS+ A     S +YL ++   TTE+ I  +I +S ND      E ++G E++
Sbjct: 61  VSLSDTWRVSQRAQDMGGSSMYLDKRDRPTTEELIQGIIVQSGNDACVVVAEGLAGGEEE 120

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           FA LM+ +A+ +GM N+ + NASG     Q  +  D   L + L   FPQ+Y YFS + F
Sbjct: 121 FAQLMTERARSLGMNNSTFGNASGWPHPLQKMSTHDLGTLAVRLITEFPQFYPYFSQKSF 180

Query: 218 RYRNRIITNH---NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
            +  R+  NH   N LL      DG+KTG+T  +G+ +V S       +V VV G+ ++ 
Sbjct: 181 AFDGRVPDNHRNRNPLLALGIGADGLKTGHTNEAGYGLVGSAVQGKRRVVFVVSGLDSAS 240

Query: 275 ERDQKALELITSF 287
            R  ++ E IT++
Sbjct: 241 LRASES-ERITNW 252


>gi|149377633|ref|ZP_01895371.1| D-alanyl-D-alanine carboxypeptidase [Marinobacter algicola DG893]
 gi|149358106|gb|EDM46590.1| D-alanyl-D-alanine carboxypeptidase [Marinobacter algicola DG893]
          Length = 388

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 119/203 (58%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTKMMT YI+   L   ++ L+  +P+S  A     S+ ++KE T  + E  +  +I
Sbjct: 64  PASLTKMMTAYIVERELDEGRISLSDMVPISVNAWRTEGSRTFVKEGTEVSVENLLKGVI 123

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E+I+GSE  F  +M+ +A+ +GM  + + NA+GL   +  +TA D A+
Sbjct: 124 IQSGNDASVALAEYIAGSEGAFVDIMNQQAQILGMNESSFANATGLPAPDHFSTAYDLAL 183

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   +  ++P+ Y  ++ + F Y N    N N LL +  ++DG+KTG+T  +G+ +V S 
Sbjct: 184 LAKAIINDYPENYPLYAQKHFTYNNIRQPNRNSLLWRDDSVDGLKTGHTEEAGYCLVASA 243

Query: 257 RYKDDPIVAVVMGMPTSQERDQK 279
           +  D  ++AVVMG  ++  R Q+
Sbjct: 244 KRNDTRLIAVVMGTDSTSSRAQE 266


>gi|42523517|ref|NP_968897.1| hypothetical protein Bd2044 [Bdellovibrio bacteriovorus HD100]
 gi|39575723|emb|CAE79890.1| dacA [Bdellovibrio bacteriovorus HD100]
          Length = 286

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 135/231 (58%), Gaps = 9/231 (3%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S +++D +  Q +    +D+   PASLTK+MT Y++F  ++  +L    ++ VS+ A  +
Sbjct: 34  SWVLLDASSGQILAELNKDQRLPPASLTKVMTAYMVFSEIREGRLSRMDRVKVSEQAIIR 93

Query: 114 NP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            P  S +YL+   + T E+ +  LI  SAND +    E +SGS+K F   M+  A+K+GM
Sbjct: 94  RPEESSMYLRVGEFVTVEELLRGLIVASANDAALVLAEVVSGSQKAFTEQMNKTAQKLGM 153

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
             +++ N+SGL+ +   +TA+D  +L + + + FP+Y++Y S ++  +R+    N N LL
Sbjct: 154 TQSLFANSSGLYTEKHYSTAKDLGLLAVRISQEFPEYFEYSSSKELTFRDFHKKNTNDLL 213

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP------IVAVVMGMPTSQER 276
                +DG+KTG+ + +G+ ++ S R    P       +AVV+G P++Q+R
Sbjct: 214 FSKLPVDGMKTGHIKAAGWCVMVSARKNKRPDKKSERYIAVVLGAPSNQDR 264


>gi|313202207|ref|YP_004040865.1| beta-lactamase [Methylovorus sp. MP688]
 gi|312441523|gb|ADQ85629.1| Beta-lactamase [Methylovorus sp. MP688]
          Length = 378

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 174/321 (54%), Gaps = 22/321 (6%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQ--DEPRYP 77
           YI R   L+  +  L++     A+E+   P     S ++ D N +Q T  +Q  DE   P
Sbjct: 3   YISRIFTLVAAVCSLTV----QAAEIPPPPSLAVKSYVLRDFN-SQSTIAQQAGDERVEP 57

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT Y+ F+ +++  L L   +P+S  A     SK++++     T ++ +  +I 
Sbjct: 58  ASLTKLMTAYLSFKAVKNGHLQLTQTLPISIKAWKVEGSKMFVEPNRPVTVDELLHGMII 117

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E I+ +E+ FA LM+ +A ++GM+NT + NA+GL D    TTA D ++L
Sbjct: 118 QSGNDASIALAEGIAITEEAFADLMNKEAARLGMKNTHFMNATGLPDPQHYTTAYDLSLL 177

Query: 198 GILLRKNFPQYYK-YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
              L ++FP+ YK  +S +++ Y N    N N+LL     +DG+KTG+T+ +G+ +++S 
Sbjct: 178 ASALIRDFPEDYKRLYSQKQYSYNNITQPNRNRLLWLDPYVDGMKTGHTKTAGYCLISSA 237

Query: 257 RYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKKTL--KHQQTHR------KDNLS 305
           +  +  +++VV+G P+   R    QK L     F E   +  + Q  ++      +DNL 
Sbjct: 238 KRGETRLISVVLGTPSDSARATESQKLLNYGFQFYESHLVYKRGQPINQLKVWKGQDNLV 297

Query: 306 STSLKKSLMIKKLKRTYSQFK 326
           + ++   L I   K  Y++ K
Sbjct: 298 AATVPTDLSITLPKGEYARVK 318


>gi|84686497|ref|ZP_01014390.1| D-alanyl-D-alanine carboxypeptidase [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84665410|gb|EAQ11887.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacterales bacterium
           HTCC2654]
          Length = 401

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 138/260 (53%), Gaps = 7/260 (2%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLY 87
           +L+  +L   I + + A E  A+  Y   V+D+  N +   K  + P  PAS++K+MTL 
Sbjct: 9   RLLTTLLAGVIALPAFAFETSARSAY---VVDLTTNTVLLEKNAQVPLPPASMSKLMTLN 65

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           ++FE L+  ++ L+TQ  VS+ A     S ++L  +   T E+ I  +I  S ND     
Sbjct: 66  MLFEALEDGRVSLDTQFNVSQRAMDMGGSTMFLTTQDRPTVEELIKGIIVLSGNDACVVV 125

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E + G+E  FA +M+ +A+ +GM+N+ + NASG     Q  +  D AIL   L + FPQ
Sbjct: 126 AEGLGGTEDAFASMMTQRARALGMENSTFGNASGWPHPAQRMSTEDLAILAERLIEEFPQ 185

Query: 208 YYKYFSIRKFRYRNRIIT---NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           YY YF I +F Y  R      N N L +     DG+KTG+T+ +G+ +V S    +  +V
Sbjct: 186 YYHYFGIEEFPYDGRAPDNRFNRNPLFDLGLGADGLKTGHTQEAGYGLVGSAMQGNRRVV 245

Query: 265 AVVMGMPTSQERDQKALELI 284
            VV G+ +   R  ++  +I
Sbjct: 246 LVVSGLDSEAARRSESAAII 265


>gi|88705586|ref|ZP_01103296.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
           [Congregibacter litoralis KT71]
 gi|88700099|gb|EAQ97208.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
           [Congregibacter litoralis KT71]
          Length = 372

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 137/244 (56%), Gaps = 9/244 (3%)

Query: 50  AKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           A P+ ++   +++D N    +     DE   PASLTK+MT Y++   +++ ++  + Q+ 
Sbjct: 11  APPEVAARAYLLVDANSGAVLVESNADEQLPPASLTKLMTAYVLASEIEAGRVSRDDQVT 70

Query: 106 VSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
           VS+ A +QNP     S ++++ +   T  Q    ++  S ND + A  E I+GSE  FA 
Sbjct: 71  VSRNAWSQNPVFNGSSLMWIEPRKPVTIGQLEQGVVISSGNDATVAVAEHIAGSEAAFAD 130

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
           LM+  A ++G+  T + N+ GL     +TTARD A L   +   FP++YK +S R + Y 
Sbjct: 131 LMNKHAAELGLHGTYFANSHGLPHPQHLTTARDLATLAKNIIARFPEHYKVYSQRDYTYN 190

Query: 221 NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           +    N NKLL +  ++DG+KTGYTR +G+ +V S       +++VVMG  +++ R ++ 
Sbjct: 191 DIKQYNRNKLLGEDPSVDGLKTGYTREAGYGLVASAERNGMRLISVVMGTESTRARARET 250

Query: 281 LELI 284
             L+
Sbjct: 251 RSLL 254


>gi|117924769|ref|YP_865386.1| penicillin-binding protein 6 [Magnetococcus sp. MC-1]
 gi|117608525|gb|ABK43980.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Magnetococcus sp. MC-1]
          Length = 386

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/240 (35%), Positives = 138/240 (57%), Gaps = 6/240 (2%)

Query: 48  LHAKPKYSSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
            H + K ++I+ D++   +  F Q  D P  PASLTK+MTLY+++E LQ   + L T +P
Sbjct: 36  FHVRAK-AAIMGDIDSGAIL-FDQNSDMPLPPASLTKVMTLYLLYEALQKGDITLETSMP 93

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           VS+ A  +  SK ++K       E  I  +  +S ND      E++ GSEK FA +M+ K
Sbjct: 94  VSRNAWQREGSKTFVKVGDKIRVEDLIRGIAVQSGNDACVVVAEYLGGSEKGFADMMNAK 153

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
           A  +GM+ + + NASGL      ++ARD  IL   L K+FP+Y  Y   +++ +      
Sbjct: 154 AAALGMEASHFANASGLPAPGHQSSARDFFILTAALMKHFPEYAHYVQQKEYTFNGIRQV 213

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP-IVAVVMGMPTSQERDQKALELI 284
           N N LL K   I G+KTG+T  +G+ ++ ++R KD   + +VVMG  +++ R+++++ L+
Sbjct: 214 NRNHLLWKDKYITGLKTGHTSEAGYCLI-AVREKDGQRLCSVVMGSSSTEVREEESMRLL 272


>gi|329120772|ref|ZP_08249433.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327460142|gb|EGF06480.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 432

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 75/200 (37%), Positives = 118/200 (59%), Gaps = 1/200 (0%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D+   Q +TG   D+P  PASLTK+MT Y+ F+ L+S KL+    +  S+ A     
Sbjct: 85  LVQDLQSGQILTGRDLDKPVEPASLTKLMTAYLAFKALESGKLNATDTLTPSEKAWRAEG 144

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S+++L           +  LI +S ND +    E + GSE+ FA +M+ +AK++GM  T 
Sbjct: 145 SRMFLNAGKPVAVGDLLKGLIVQSGNDAAITLAEALGGSEEGFAKMMNAEAKRLGMNGTH 204

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           + NA+GL      TT RD AIL   + +++P+YY  +S++ F+Y N    N N LL +  
Sbjct: 205 FTNATGLPGDGHFTTVRDLAILAAAIIRDYPKYYPIYSMQSFKYNNIEQPNRNLLLYRDP 264

Query: 236 NIDGIKTGYTRNSGFNIVTS 255
           N+DG+KTG+T ++G+N+V S
Sbjct: 265 NVDGLKTGHTNSAGYNLVAS 284


>gi|126729339|ref|ZP_01745153.1| D-alanyl-D-alanine carboxypeptidase [Sagittula stellata E-37]
 gi|126710329|gb|EBA09381.1| D-alanyl-D-alanine carboxypeptidase [Sagittula stellata E-37]
          Length = 393

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 146/270 (54%), Gaps = 11/270 (4%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSK 96
           +I++ + A+    K   ++ VIDV    +   K  DE   PAS++K+MTLYI FE ++  
Sbjct: 14  AILLATQAAAFDTK-ATAAHVIDVTTGTVLLAKNADEAVPPASMSKLMTLYITFEAIRDG 72

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS--GS 154
           +L L+ ++PVS+ A +   S ++L  K     E  +  +I  S ND      E +S  G+
Sbjct: 73  RLSLDERLPVSEHAMSYTGSTMFLNTKDRIRVEDLLRGIIVLSGNDACAVLAEALSPDGT 132

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           E  FA LM+ +A ++GM N+ +KNASG      + + RD  +L + + ++FP++Y  F  
Sbjct: 133 EAGFARLMTQRAHQLGMTNSTFKNASGWPADGHVMSMRDLTLLALHIIQDFPEFYPMFGE 192

Query: 215 RKFRYRNRI---ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           +KF +  R    + N N LL+     DG+KTG+T+ +G+ +V S +     I+  + G+ 
Sbjct: 193 KKFEFDGRAPSNVNNRNPLLSLNIGADGLKTGHTQEAGYGLVGSAKNDQRRIIFAMTGLA 252

Query: 272 TSQERDQKALELIT----SFLEKKTLKHQQ 297
           T+ ER +++  ++      F E+  +K  Q
Sbjct: 253 TAGERAEQSEAIVNWAFRQFAEQTIVKKDQ 282


>gi|254000240|ref|YP_003052303.1| beta-lactamase [Methylovorus sp. SIP3-4]
 gi|253986919|gb|ACT51776.1| Beta-lactamase [Methylovorus sp. SIP3-4]
          Length = 378

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 174/321 (54%), Gaps = 22/321 (6%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQ--DEPRYP 77
           YI R   L+  +  L++     A+E+   P     S ++ D N +Q T  +Q  DE   P
Sbjct: 3   YISRIFTLVATVCSLTV----QAAEIPPPPSLAVKSYVLRDFN-SQSTIAQQAGDERVEP 57

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT Y+ F+ +++  L L   +P+S  A     SK++++     T ++ +  +I 
Sbjct: 58  ASLTKLMTAYLSFKAVKNGHLQLTQTLPISIKAWKVEGSKMFVEPNRPVTVDELLHGMII 117

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E I+ +E+ FA LM+ +A ++GM+NT + NA+GL D    TTA D ++L
Sbjct: 118 QSGNDASIALAEGIAITEEAFADLMNKEAARLGMKNTHFMNATGLPDPQHYTTAYDLSLL 177

Query: 198 GILLRKNFPQYYK-YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
              L ++FP+ YK  +S +++ Y N    N N+LL     +DG+KTG+T+ +G+ +++S 
Sbjct: 178 ASALIRDFPEDYKRLYSQKQYSYNNITQPNRNRLLWLDPYVDGMKTGHTKTAGYCLISSA 237

Query: 257 RYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKKTL--KHQQTHR------KDNLS 305
           +  +  +++VV+G P+   R    QK L     F E   +  + Q  ++      +DNL 
Sbjct: 238 KRGETRLISVVLGTPSDSARATESQKLLNYGFQFYESHLVYKRGQPINQLKVWKGQDNLV 297

Query: 306 STSLKKSLMIKKLKRTYSQFK 326
           + ++   L I   K  Y++ K
Sbjct: 298 AATVPTDLSITLPKGEYARVK 318


>gi|212702629|ref|ZP_03310757.1| hypothetical protein DESPIG_00657 [Desulfovibrio piger ATCC 29098]
 gi|212673901|gb|EEB34384.1| hypothetical protein DESPIG_00657 [Desulfovibrio piger ATCC 29098]
          Length = 285

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 120/208 (57%), Gaps = 2/208 (0%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT+Y++ + ++  +L  NT I V  TA     S + L+ +   T +Q +  + 
Sbjct: 59  PASLTKVMTMYVVMDRIKLGRLKRNTSIRVHPTARVGG-SSMRLRPRQKVTVDQLLTGMA 117

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A  + ISG+ + F  LM++KA+++GM  T++KN +GL    Q TTARD A 
Sbjct: 118 VASGNDAAMAISQHISGNSRNFTHLMNHKARQLGMTRTVFKNPTGLPAAGQRTTARDMAT 177

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L     ++ PQ  +Y S+R FR+  R +   N +L  +  +DG+KTG+T  SG+NI+ + 
Sbjct: 178 LARAYLRSHPQAMRYHSLRSFRFNGRTLGATNTMLG-IPGVDGLKTGWTVASGYNIIVTA 236

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELI 284
           R     ++ VVMG  +   RD  A  LI
Sbjct: 237 RRGKTRLLVVVMGGRSRAARDMVAHSLI 264


>gi|209964479|ref|YP_002297394.1| D-alanyl-D-alanine carboxypeptidase [Rhodospirillum centenum SW]
 gi|209957945|gb|ACI98581.1| D-alanyl-D-alanine carboxypeptidase [Rhodospirillum centenum SW]
          Length = 403

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 131/230 (56%), Gaps = 1/230 (0%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +I+ID +   +   K  + R P +S++K+MT+Y++F+ ++S +L L+  +PVS+ A    
Sbjct: 58  AILIDTSTGTVLFEKNADERTPTSSMSKVMTMYMVFDRIRSGRLSLDDTLPVSENAWRMQ 117

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            SK++++       E  I  +I +S ND      E +SGSE  FA  M+ KA ++GM  +
Sbjct: 118 GSKMWVELGNSIRVEDLIRGVIIQSGNDACIVLAEGLSGSEPAFAADMTRKAHEMGMTAS 177

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            + NASG  D +  +TARD A L   L K+FP++  Y+S ++F Y      N N LL + 
Sbjct: 178 NFMNASGWPDPDHYSTARDLATLAQRLIKDFPEFLHYYSEKEFTYHGIKQGNRNPLLYRN 237

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
             +DG+KTG+T ++G+ ++ +       +V VV G+P  Q R  ++  L+
Sbjct: 238 MGVDGLKTGHTESAGYGLIATGERDGRRLVLVVNGLPNMQARADESARLL 287


>gi|197284323|ref|YP_002150195.1| D-alanyl-D-alanine carboxypeptidase fraction A [Proteus mirabilis
           HI4320]
 gi|227358533|ref|ZP_03842858.1| D-alanyl-D-alanine carboxypeptidase fraction A [Proteus mirabilis
           ATCC 29906]
 gi|194681810|emb|CAR41057.1| putative penicillin-binding protein [Proteus mirabilis HI4320]
 gi|227161244|gb|EEI46318.1| D-alanyl-D-alanine carboxypeptidase fraction A [Proteus mirabilis
           ATCC 29906]
          Length = 403

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/270 (33%), Positives = 151/270 (55%), Gaps = 12/270 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI     + A+   S I+ID N  ++   K  D  R PASLTKMMT Y+I + +++ K+ 
Sbjct: 37  MIPAVPNIEAE---SYILIDYNSGKVLAEKNADVRRDPASLTKMMTSYVIGQAIRAGKIS 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            N  +P+ + A AT NP     S ++LK     T  Q    +  +S ND   A   +++G
Sbjct: 94  NNDIVPIGEEAWATGNPVFRGSSLMFLKPGDKVTVSQLTRGINLQSGNDACVAMASYVAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  +M++  K++G+QNT ++   GL    Q ++ARD A++G  L ++ P+ Y  + 
Sbjct: 154 SQDTFVTMMNDYVKRLGLQNTQFQTVHGLDAPGQYSSARDMALIGAALIRDVPEEYAIYK 213

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F Y N   TN N LL +   N+DGIKTG+T  +G+N+V S    +  +++ VMG  +
Sbjct: 214 EKEFTYNNIRQTNRNGLLWDTSLNVDGIKTGHTEAAGYNLVASATEGNMRLISAVMGGHS 273

Query: 273 SQERDQKALELIT-SFLEKKTLKHQQTHRK 301
           S+ RD ++ +L+T  F   +T+K  Q  ++
Sbjct: 274 SKGRDAESKKLLTWGFRFFETVKPLQVGKE 303


>gi|94309170|ref|YP_582380.1| penicillin-binding protein 6 [Cupriavidus metallidurans CH34]
 gi|93353022|gb|ABF07111.1| D-alanyl-D-alanine carboxypeptidase [Cupriavidus metallidurans
           CH34]
          Length = 397

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/240 (33%), Positives = 141/240 (58%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S ++ DV   Q    +  + R  PASLTK+MT Y+ FE L+ K+L L+  +  +      
Sbjct: 43  SWMLYDVTSGQALASQNADMRIEPASLTKLMTAYLAFEALKEKRLTLDQTVTPTDIVRKV 102

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S+++++     + +  +L LI +S ND S A  E + GSE+ F ++M+ +A+++GM
Sbjct: 103 KSDESRMFIEAGKPVSVQDLLLGLIVQSGNDASLALAEAVGGSEEGFVVMMNREAQRMGM 162

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT + N  G+ D N  TTA D AIL   L K+FP+YY  +S ++F Y      N N+LL
Sbjct: 163 KNTHFTNTDGVPDPNHYTTAVDLAILTTRLIKDFPEYYSMYSQKEFTYNKIRQPNRNRLL 222

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLR--YKDDP-----IVAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+++G+ +++S +    + P     +V++V+G  T Q R Q++L+++
Sbjct: 223 YIDPTVDGVKTGHTKSAGYCLISSAKRPLANVPNGSRRLVSIVIGTATEQIRTQESLKIL 282


>gi|257439156|ref|ZP_05614911.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium
           prausnitzii A2-165]
 gi|257198407|gb|EEU96691.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium
           prausnitzii A2-165]
          Length = 412

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/233 (35%), Positives = 128/233 (54%), Gaps = 3/233 (1%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++I+++    ++   K  + R P AS+TK+MTL + FE ++  KL L+T +PVS+ A   
Sbjct: 65  AAILMEPETGRVLYEKAPDERMPIASITKLMTLLLTFEAIRGGKLTLDTPVPVSEHAYHM 124

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+    FT ++ + A+   SAND + A  E + GSE  F   M+ +A ++GM N
Sbjct: 125 GGSQIWLEPGEQFTLDEMLRAICVSSANDAAVAVAELVGGSEPVFVEQMNARAAELGMTN 184

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR--IITNHNKLL 231
           T ++NA GL  +  ++TARD AIL   L    P+   Y  I     RN    + N NKLL
Sbjct: 185 TTFRNACGLDTEGHLSTARDVAILSRYLLNTCPELLHYTGIWTDSLRNGQTQLVNTNKLL 244

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +   I G+KTG T  +G  I  S       ++AVV+G P+S +R   A  L+
Sbjct: 245 RRYSGITGLKTGTTSGAGVCISASATRDGLTLIAVVLGSPSSADRFHSATTLL 297


>gi|171320084|ref|ZP_02909152.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria
           MEX-5]
 gi|171094681|gb|EDT39727.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria
           MEX-5]
          Length = 437

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 135/239 (56%), Gaps = 9/239 (3%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D   N  +     DE   PASLTK+MT Y++FE L  KK+ +   +  S+     
Sbjct: 83  SWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSEAVRRV 142

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  LM+ +A+++GM
Sbjct: 143 GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQFVTLMNAEAQRLGM 202

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           + T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F+Y N    N N+LL
Sbjct: 203 KGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFKYNNIRQGNRNRLL 262

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI------VAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++ S +     +      V+V+MG P   ER Q +++++
Sbjct: 263 WLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEPKEGERTQDSMKML 321


>gi|298293245|ref|YP_003695184.1| serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506]
 gi|296929756|gb|ADH90565.1| Serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506]
          Length = 461

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 131/230 (56%), Gaps = 1/230 (0%)

Query: 56  SIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++VI+V   + +      +P YPAS+TK+MT Y+ F+ ++  +L   T + VS  A  Q 
Sbjct: 36  ALVIEVESGKVLLADDATKPWYPASITKLMTAYVTFKAIRQGRLTPETLLTVSANAVAQK 95

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           PSK+  K  T  T +  +  ++ +SAND++    E +SGS   F   M++ A ++GM  +
Sbjct: 96  PSKMGFKAGTQLTVDNALKMMLVKSANDMAVVLAEGVSGSLPAFVAEMNSTAAQLGMTGS 155

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            + N +GL D + ++TARD A+L   +  +FP+    F I   +    +I ++NKL+++ 
Sbjct: 156 HFANPNGLPDPDNVSTARDLAVLARHIFLDFPEQADLFRIPAMKLGTAVIRSYNKLIDRY 215

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
              DG+KTG+   SGFN+V S +  +  ++ VV+G  + + R ++A  L+
Sbjct: 216 PGADGMKTGFICASGFNLVASAKRGNRHLLVVVLGTQSGRARTEQAALLL 265


>gi|325202334|gb|ADY97788.1| penicillin-binding protein 6 precursor [Neisseria meningitidis
           M01-240149]
 gi|325207913|gb|ADZ03365.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
           NZ-05/33]
          Length = 389

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 146/252 (57%), Gaps = 10/252 (3%)

Query: 48  LHAKPKYSS--------IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +HA P + +        IVID+   Q+   K  + P  PA+LT++MT Y++F+ ++S  +
Sbjct: 32  VHAAPTFQTPETLTAAHIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGNI 91

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS-TAFGEFISGSEKK 157
                + + ++A     S+++++     +T++ +  +I  SAND + T  G   +GS + 
Sbjct: 92  RSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLVGRLGNGSIEN 151

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A+L   L ++FP+YY  FSI+ F
Sbjct: 152 FVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLALLSEALMRDFPEYYPLFSIKSF 211

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           +++N    N N LL + +N++G+K G+T + G+N+  S       I+ + +G  +++ R 
Sbjct: 212 KFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRA 271

Query: 278 QKALELITSFLE 289
               +L+   L+
Sbjct: 272 SDNSKLLNRALQ 283


>gi|134096155|ref|YP_001101230.1| D-alanyl-D-alanine carboxypeptidase [Herminiimonas arsenicoxydans]
 gi|133740058|emb|CAL63109.1| Putative penicillin-binding (D-alanyl-d-alanine carboxypeptidase)
           transmembrane protein [Herminiimonas arsenicoxydans]
          Length = 382

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/237 (33%), Positives = 141/237 (59%), Gaps = 7/237 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S +++D   NQ+    + + R  PASLTK+MT Y+ F  +Q K++ LN  I VS  A   
Sbjct: 32  SWLLLDATSNQILASNEADVRIEPASLTKLMTAYVAFSAIQDKRIALNQMITVSTNAWKV 91

Query: 114 NP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +P  SK++++ +   +    +  LI +S ND + A  E ++G+E  FA LM+ +A+++GM
Sbjct: 92  DPESSKMFIEPRVPVSVNDLLYGLIVQSGNDAAVALAEAVAGTEDAFAALMNREAERMGM 151

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T + N  GL   N  +TARD A+L   L  + P++YK +S + F Y     +N N+LL
Sbjct: 152 KSTRFANPHGLPSPNNYSTARDLAVLATHLVSDHPEFYKIYSTKDFTYNKIKQSNRNRLL 211

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP----IVAVVMGMPTSQERDQKALELI 284
                +DG+KTGYT+N+G+ ++++ +  +      +++VV+G  + Q R Q++ +L+
Sbjct: 212 WLDPTVDGMKTGYTQNAGYCLISTAKRPNGANERRLISVVIGTASDQARAQESQKLL 268


>gi|307943474|ref|ZP_07658818.1| penicillin-binding protein [Roseibium sp. TrichSKD4]
 gi|307773104|gb|EFO32321.1| penicillin-binding protein [Roseibium sp. TrichSKD4]
          Length = 446

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 127/223 (56%), Gaps = 13/223 (5%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPASLTK+MT Y+  + ++ +++ + + +  SK + ++ PSK+  K  T  T +  +  +
Sbjct: 45  YPASLTKIMTAYVTLKAVRDERITMTSPVVQSKNSISEPPSKMGFKVGTQLTVDAALKII 104

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + +SANDV+ A GE +SGSE  F   M+ +AK++GM+NT + N  GL D  Q++TARD A
Sbjct: 105 MIKSANDVAVALGEAVSGSEAAFIAEMNREAKRLGMRNTRFVNPHGLPDNAQVSTARDMA 164

Query: 196 ILGILLRKNFP---QYYKY----FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
           +L      +FP   Q YKY    F  +  R  NR        L ++   +G+KTGY  NS
Sbjct: 165 LLARAFWYDFPEARQIYKYPGIKFGRKPLRSANRF------FLQRVPGANGMKTGYICNS 218

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
           G+N+  ++  +   ++AVV+G  +  ER     EL+    +K+
Sbjct: 219 GYNVAATVTRRGRTLIAVVLGARSGLERTALTRELMDKGFKKR 261


>gi|15676773|ref|NP_273918.1| penicillin-binding protein [Neisseria meningitidis MC58]
 gi|7226115|gb|AAF41288.1| penicillin-binding protein [Neisseria meningitidis MC58]
 gi|316985771|gb|EFV64715.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           meningitidis H44/76]
 gi|325139970|gb|EGC62499.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
           CU385]
 gi|325200438|gb|ADY95893.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
           H44/76]
          Length = 389

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 146/252 (57%), Gaps = 10/252 (3%)

Query: 48  LHAKPKYSS--------IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +HA P + +        IVID+   Q+   K  + P  PA+LT++MT Y++F+ ++S  +
Sbjct: 32  VHAAPTFQTPETLTAAHIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGNI 91

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS-TAFGEFISGSEKK 157
                + + ++A     S+++++     +T++ +  +I  SAND + T  G   +GS + 
Sbjct: 92  QSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIEN 151

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A+L   L ++FP+YY  FSI+ F
Sbjct: 152 FVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLALLSEALMRDFPEYYPLFSIKSF 211

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           +++N    N N LL + +N++G+K G+T + G+N+  S       I+ + +G  +++ R 
Sbjct: 212 KFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRA 271

Query: 278 QKALELITSFLE 289
               +L+   L+
Sbjct: 272 SDNSKLLNWALQ 283


>gi|115352994|ref|YP_774833.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria
           AMMD]
 gi|115282982|gb|ABI88499.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Burkholderia ambifaria AMMD]
          Length = 436

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 134/239 (56%), Gaps = 9/239 (3%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D   N  +     DE   PASLTK+MT Y++FE L  KK+ +   I  S+     
Sbjct: 82  SWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIITPSEAVRRV 141

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S+++++     +    +  +I +S ND + A  E + GSE +F  LM+ +A+++GM
Sbjct: 142 GLDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQFVTLMNAEAQRLGM 201

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           + T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F+Y N    N N+LL
Sbjct: 202 KGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFKYNNIRQGNRNRLL 261

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI------VAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++ S +     +      V+V+MG P   ER Q +++++
Sbjct: 262 WLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEPKEGERTQDSMKML 320


>gi|325137739|gb|EGC60314.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
           ES14902]
          Length = 389

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 156/275 (56%), Gaps = 20/275 (7%)

Query: 35  LFLSIIM-ISMASE---------LHAKPKYSS--------IVIDVNKNQMTGFKQ-DEPR 75
           + LSII+ IS A+          +HA P + +        IVID+   Q+   K  + P 
Sbjct: 9   VLLSIILGISHATAASPAPNKPAVHAAPTFQTPETLTAAHIVIDLQSKQILSAKNINTPV 68

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
            PA+LT++MT Y++F+ ++S  +     + + ++A     S+++++     +T++ +  +
Sbjct: 69  EPAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGM 128

Query: 136 ITRSANDVS-TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           I  SAND + T  G   +GS + F   M+ +A+++GM+NT++KN +GL  + Q++TA+D 
Sbjct: 129 IALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDL 188

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
           A+L   L ++FP+YY  FSI+ F+++N    N N LL + +N++G+K G+T + G+N+  
Sbjct: 189 ALLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAV 248

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           S       I+ + +G  +++ R     +L+   L+
Sbjct: 249 SYSGNGRHILVITLGSESAETRASDNSKLLNWALQ 283


>gi|172061846|ref|YP_001809498.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria
           MC40-6]
 gi|171994363|gb|ACB65282.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria
           MC40-6]
          Length = 437

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 134/239 (56%), Gaps = 9/239 (3%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D   N  +     DE   PASLTK+MT Y++FE L  KK+ +   I  S+     
Sbjct: 83  SWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIITPSEAVRRV 142

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S+++++     +    +  +I +S ND + A  E + GSE +F  LM+ +A+++GM
Sbjct: 143 GLDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQFVTLMNAEAQRLGM 202

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           + T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F+Y N    N N+LL
Sbjct: 203 KGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFKYNNIRQGNRNRLL 262

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI------VAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++ S +     +      V+V+MG P   ER Q +++++
Sbjct: 263 WLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEPKEGERTQDSMKML 321


>gi|91781628|ref|YP_556834.1| penicillin-binding protein 6 [Burkholderia xenovorans LB400]
 gi|91685582|gb|ABE28782.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Burkholderia xenovorans LB400]
          Length = 418

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 139/241 (57%), Gaps = 12/241 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D   NQ +     DE   PASLTK+MT Y++FE LQ+KK++++  +  S+     
Sbjct: 63  SWVLVDATSNQVLASGNADERVEPASLTKLMTAYLVFEALQTKKINMDQTVMPSEAVRRV 122

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S+++++     T    +  +I +S ND + A  E + GSE +F  +M+ +A+++GM
Sbjct: 123 RTDESRMFIEANKPVTVHDLVYGMIVQSGNDAAIALAELVGGSESQFVNMMNTEAQRLGM 182

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T + + +G+ D    TTA D AIL   L ++FP YY  FS+++F Y      N N+LL
Sbjct: 183 KHTHFADVNGMPDPQHYTTAGDLAILSARLIRDFPDYYNIFSVKEFTYNKIKQPNRNRLL 242

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP--------IVAVVMGMPTSQERDQKALEL 283
                +DG+KTG+T+ +G+ ++ S + +  P        +V+V+MG     +R Q +L++
Sbjct: 243 WIDPTVDGLKTGHTQAAGYCLIASAK-RSLPGTTDASRRLVSVMMGETKEHDRVQDSLKM 301

Query: 284 I 284
           +
Sbjct: 302 L 302


>gi|89053769|ref|YP_509220.1| Serine-type D-Ala-D-Ala carboxypeptidase [Jannaschia sp. CCS1]
 gi|88863318|gb|ABD54195.1| Serine-type D-Ala-D-Ala carboxypeptidase [Jannaschia sp. CCS1]
          Length = 398

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 85/248 (34%), Positives = 131/248 (52%), Gaps = 10/248 (4%)

Query: 30  LMGKILFLSIIMI-SMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLY 87
           L     F+S +M  +   E  A+  Y   V D    Q +     DE   PAS++K+MTL 
Sbjct: 14  LAAGCFFVSSLMANAQGYETQARAAY---VYDHASGQVLLALNADEALPPASMSKLMTLL 70

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + FE L+  +L L T++PVS+ A +   S ++L  +   T E+ I  ++  S ND S   
Sbjct: 71  MAFEALRDGRLTLETRVPVSEHAMSFGGSTMFLNTQDRPTIEELIRGVVIVSGNDASVVL 130

Query: 148 GEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           GE +S  G+E+ FA +M+ +A+++GM N+ ++NASG        + RD  IL   L + F
Sbjct: 131 GEALSPDGTEEGFATMMTQRAQQLGMMNSTFRNASGWPADGHAMSMRDLGILAQRLIEEF 190

Query: 206 PQYYKYFSIRKFRYRNRIIT---NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           P+YY YF   +F Y +R      N N LL      DG+KTG+T+ +GF +V S    D  
Sbjct: 191 PEYYGYFVETEFDYEDRSPANRFNRNPLLGLGIGADGLKTGHTQEAGFGLVGSAMQGDRR 250

Query: 263 IVAVVMGM 270
           +  V+ G+
Sbjct: 251 VTFVITGL 258


>gi|296160368|ref|ZP_06843185.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. Ch1-1]
 gi|295889349|gb|EFG69150.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. Ch1-1]
          Length = 410

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 139/241 (57%), Gaps = 12/241 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D   NQ +     DE   PASLTK+MT Y++FE LQ+KK++++  +  S+     
Sbjct: 55  SWVLVDATSNQVLASGNADERVEPASLTKLMTAYLVFEALQTKKINMDQTVMPSEAVRRV 114

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S+++++     T    +  +I +S ND + A  E + GSE +F  +M+ +A+++GM
Sbjct: 115 RTDESRMFIEANKPVTVHDLVYGMIVQSGNDAAIALAELVGGSESQFVNMMNTEAQRLGM 174

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T + + +G+ D    TTA D AIL   L ++FP YY  FS+++F Y      N N+LL
Sbjct: 175 KHTHFADVNGMPDPQHYTTAGDLAILSARLIRDFPDYYNIFSVKEFTYNKIKQPNRNRLL 234

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP--------IVAVVMGMPTSQERDQKALEL 283
                +DG+KTG+T+ +G+ ++ S + +  P        +V+V+MG     +R Q +L++
Sbjct: 235 WIDPTVDGLKTGHTQAAGYCLIASAK-RSLPGTTDASRRLVSVMMGETKEHDRVQDSLKM 293

Query: 284 I 284
           +
Sbjct: 294 L 294


>gi|170704053|ref|ZP_02894691.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria
           IOP40-10]
 gi|170131039|gb|EDS99728.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria
           IOP40-10]
          Length = 368

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 134/239 (56%), Gaps = 9/239 (3%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D   N  +     DE   PASLTK+MT Y++FE L  KK+ +   I  S+     
Sbjct: 14  SWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIITPSEAVRRV 73

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S+++++     +    +  +I +S ND + A  E + GSE +F  LM+ +A+++GM
Sbjct: 74  GLDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQFVTLMNAEAQRLGM 133

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           + T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F+Y N    N N+LL
Sbjct: 134 KGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFKYNNIRQGNRNRLL 193

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI------VAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++ S +     +      V+V+MG P   ER Q +++++
Sbjct: 194 WLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEPKEGERTQDSMKML 252


>gi|209542214|ref|YP_002274443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209529891|gb|ACI49828.1| Serine-type D-Ala-D-Ala carboxypeptidase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 413

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 124/225 (55%), Gaps = 4/225 (1%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   P+SLTKMMT YI+F  L+S +L L+  +PVS+ A     SK+++        +  
Sbjct: 87  DERMPPSSLTKMMTAYIVFGMLKSGRLKLDQMLPVSEKAWRMQGSKMFVPLGQSIAVQDL 146

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           I  ++ +S ND      E ++GSE++F   M++ A +IG+ N+ + NA+G    N   +A
Sbjct: 147 IQGMVIQSGNDACIVLAEGVAGSEEQFVAQMNDMAARIGLSNSHFMNATGWPADNHYMSA 206

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           RD A L + L ++FP+YY +FS + +R+      N N L++K    DG+KTG+T   GF 
Sbjct: 207 RDVAQLAVRLIRDFPEYYHFFSEKDYRFNKISQGNRNVLVDK-GLADGLKTGHTDAGGFG 265

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKKTL 293
           +  S     + +V  + GMP+S  R    ++ LE   +  E  TL
Sbjct: 266 LCASADRGGNRVVLSLNGMPSSNARAHEGERLLEWSFANFENATL 310


>gi|254483505|ref|ZP_05096732.1| D-alanyl-D-alanine carboxypeptidase family protein [marine gamma
           proteobacterium HTCC2148]
 gi|214036226|gb|EEB76906.1| D-alanyl-D-alanine carboxypeptidase family protein [marine gamma
           proteobacterium HTCC2148]
          Length = 387

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 144/259 (55%), Gaps = 9/259 (3%)

Query: 35  LFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIF 90
           L LSI     A+ + + P+ ++   +++D N  ++   K  D P  PASLTKMMT Y++ 
Sbjct: 10  LALSIFGAQAATIVPSPPQIAAKAYLLVDANSGEILAEKNADMPLPPASLTKMMTSYVLA 69

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVST 145
             +   ++ L+  + VS+ A +QNP     S ++++     + +     ++  S ND + 
Sbjct: 70  TEIDEGRVALSDMVTVSENAWSQNPLFAGSSLMWIEPGKEVSIDDLQRGIVISSGNDATV 129

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E ++GSE  FA +M++ A+K+GM +T Y N+ GL D + +TTARD A L   +    
Sbjct: 130 AVAEHLAGSEAVFAEMMNSHAEKLGMIDTYYVNSHGLPDPDHVTTARDLATLSKAMIIEH 189

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           P++Y  +  R+F Y N    N N LL +   +DG+KTGYT+ +G+ +V S   +   +++
Sbjct: 190 PEHYAVYKEREFTYNNIKQYNRNSLLAEDPTVDGLKTGYTQEAGYCLVASAERRGMRLIS 249

Query: 266 VVMGMPTSQERDQKALELI 284
           VV+G  +++ R  +   L+
Sbjct: 250 VVLGASSTRARKNETRSLL 268


>gi|162147581|ref|YP_001602042.1| penicillin-binding protein 5 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161786158|emb|CAP55740.1| putative penicillin-binding protein 5 precursor [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 422

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 124/225 (55%), Gaps = 4/225 (1%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   P+SLTKMMT YI+F  L+S +L L+  +PVS+ A     SK+++        +  
Sbjct: 96  DERMPPSSLTKMMTAYIVFGMLKSGRLKLDQMLPVSEKAWRMQGSKMFVPLGQSIAVQDL 155

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           I  ++ +S ND      E ++GSE++F   M++ A +IG+ N+ + NA+G    N   +A
Sbjct: 156 IQGMVIQSGNDACIVLAEGVAGSEEQFVAQMNDMAARIGLSNSHFMNATGWPADNHYMSA 215

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           RD A L + L ++FP+YY +FS + +R+      N N L++K    DG+KTG+T   GF 
Sbjct: 216 RDVAQLAVRLIRDFPEYYHFFSEKDYRFNKISQGNRNVLVDK-GLADGLKTGHTDAGGFG 274

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKKTL 293
           +  S     + +V  + GMP+S  R    ++ LE   +  E  TL
Sbjct: 275 LCASADRGGNRVVLSLNGMPSSNARAHEGERLLEWSFANFENATL 319


>gi|254516725|ref|ZP_05128784.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [gamma proteobacterium NOR5-3]
 gi|219675148|gb|EED31515.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [gamma proteobacterium NOR5-3]
          Length = 379

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 80/237 (33%), Positives = 133/237 (56%), Gaps = 12/237 (5%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +++D N    +     DE   PASLTK+MT +++   + + +L  + Q+ VS+ A +QNP
Sbjct: 28  LLVDANSGAVLVESNADEQLPPASLTKLMTAFVLASEIDAGRLSRDDQVTVSRNAWSQNP 87

Query: 116 -----SKLYLKEKTYFTT---EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                S ++++ +   T    EQGI   +  S ND + A  E I+GSE  FA LM+  A 
Sbjct: 88  VFNGSSLMWIEPRMPVTIGQLEQGI---VISSGNDATVAVAEHIAGSETAFADLMNKHAA 144

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           ++GM  + + N+ GL     + TARD A L   +   FP++YK +S R++ Y +    N 
Sbjct: 145 ELGMHGSYFANSHGLPHPQHLMTARDLATLAKAIITRFPEHYKVYSQREYTYNDIRQYNR 204

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           NKLL +  ++DG+KTGYTR +G+ +V S       +++VVMG  +++ R ++   L+
Sbjct: 205 NKLLGEDPSVDGLKTGYTREAGYGLVASAERNGMRLISVVMGTESTRARARETRSLL 261


>gi|126462962|ref|YP_001044076.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332558995|ref|ZP_08413317.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
           WS8N]
 gi|126104626|gb|ABN77304.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332276707|gb|EGJ22022.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
           WS8N]
          Length = 389

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 146/270 (54%), Gaps = 28/270 (10%)

Query: 35  LFLSIIM------ISMASELHAKPKY------SSIVIDVNKNQMTGFKQDEPRYPASLTK 82
           LFL++I+       +MA +  A+  +       ++++D N +        EP  PAS++K
Sbjct: 6   LFLALILSLVTALPAMAFDTRARAAWVYDVTTHTVLLDKNAH--------EPLPPASMSK 57

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MTL ++FE L+  ++ + T   VS  A     SK++++E+   T E+ I  +I  S ND
Sbjct: 58  LMTLNMLFEALRDGRVTMETTFAVSTKAKQMGGSKMFVEERDRPTVEELIHGIIVNSGND 117

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
                 E ++G+E  FA  M+ +AK +GM ++ + N+SG  D     +  D  IL + L 
Sbjct: 118 ACVVVAEGLNGTESDFARAMTVRAKALGMTDSTFTNSSGWPDPGHRMSVHDLGILAVRLI 177

Query: 203 KNFPQYYKYFSIRKFRYRNRIIT---NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTS 255
           + FP++Y YFS  +F Y++R+ +   N N LL    N     DG+KTG+T+ +G+ +V S
Sbjct: 178 EEFPEFYPYFSHTEFNYKDRVPSNANNRNPLLRLGPNGDWTADGLKTGHTQEAGYGLVGS 237

Query: 256 LRYKDD-PIVAVVMGMPTSQERDQKALELI 284
              KD   IV V+ G+ T  +R Q+  +++
Sbjct: 238 AVQKDGRRIVFVLTGLATEADRAQEGEQIV 267


>gi|113866332|ref|YP_724821.1| D-alanyl-D-alanine carboxypeptidase (serine-type) [Ralstonia
           eutropha H16]
 gi|113525108|emb|CAJ91453.1| D-Alanyl-D-alanine carboxypeptidase (serine-type) [Ralstonia
           eutropha H16]
          Length = 399

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 81/240 (33%), Positives = 141/240 (58%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQI-PVSKTAAT 112
           S ++ DV   Q    +  + R  PASLTK+MT Y+ FE L+ K+L L+  + P S     
Sbjct: 45  SWMLYDVTSGQALASQNADARIEPASLTKLMTAYLAFEALKEKRLTLDQAVVPTSVVLKV 104

Query: 113 Q-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           + + S+++++     T +  +L LI +S ND + A  E + GSE+ F  +M+ +A+++GM
Sbjct: 105 KSDESRMFIEPNKPVTVQDLLLGLIVQSGNDAALALAEAVGGSEEGFVAMMNREAQRMGM 164

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT + N  G+ D N  TTA D A L   L K+FP+YY  +S ++F Y      N N+LL
Sbjct: 165 KNTHFTNTDGIPDPNHYTTAVDLATLTTRLIKDFPEYYAMYSQKEFTYNKIRQPNRNRLL 224

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLR--YKDDP-----IVAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+++G+ +++S +    + P     ++++V+G  T Q R Q++L+++
Sbjct: 225 YIDPTVDGVKTGHTKSAGYCLISSAKRPLANVPDGSRRLISIVIGTTTEQVRTQESLKIL 284


>gi|295675328|ref|YP_003603852.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp.
           CCGE1002]
 gi|295435171|gb|ADG14341.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp.
           CCGE1002]
          Length = 409

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 137/241 (56%), Gaps = 12/241 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D   NQ +     DE   PASLTK+MT Y++FE L +KK+ ++  I  S+     
Sbjct: 54  SWVLVDATSNQVLASANADERVEPASLTKLMTAYLVFEALDTKKITMDQSIEPSEAVRRV 113

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S+++++     T    +  +I +S ND + A  E + GSE +F  +M+ +A+K+GM
Sbjct: 114 RNDESRMFIEALKPVTVHDLVYGMIVQSGNDAAIALAELVGGSEAQFVDMMNKEAQKLGM 173

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT + + +G+ D    TTA D AIL   L +++P YY  FS+++F Y      N N+LL
Sbjct: 174 KNTHFADVNGMPDPQHYTTAGDLAILSARLIRDYPDYYNIFSVKEFTYNKIKQPNRNRLL 233

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP--------IVAVVMGMPTSQERDQKALEL 283
                +DG+KTG+T+ +G+ ++ S + +  P        +V+V+MG     +R Q +L++
Sbjct: 234 WIDPTVDGLKTGHTQAAGYCLIASAK-RPLPGTTDASRRLVSVMMGETKEHDRVQDSLKM 292

Query: 284 I 284
           +
Sbjct: 293 L 293


>gi|330994628|ref|ZP_08318551.1| D-alanyl-D-alanine carboxypeptidase dacC [Gluconacetobacter sp.
           SXCC-1]
 gi|329758269|gb|EGG74790.1| D-alanyl-D-alanine carboxypeptidase dacC [Gluconacetobacter sp.
           SXCC-1]
          Length = 428

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 122/227 (53%), Gaps = 4/227 (1%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   P+SLTKMMT YI+F  L++ +L L   +PVS+ A     SK+++           
Sbjct: 102 DERMPPSSLTKMMTAYIVFGMLRAGRLTLEQTLPVSEKAWRMQGSKMFVPLNGTVAVSDL 161

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           I  ++ +S ND      E I+GSE++F  LM+ KA ++GM N+ + NA+G        +A
Sbjct: 162 IQGMVIQSGNDACIVLAEGIAGSEEQFVGLMNAKAAELGMSNSHFLNATGWPMDGHYMSA 221

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           RD A + + L  +FP YY +FS + FRY N+I   +  +L      DG+KTG+T   GF 
Sbjct: 222 RDVATIAMHLIHDFPDYYHFFSEKSFRY-NKISQENRNVLVVRGVADGLKTGHTDAGGFG 280

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI-TSFL--EKKTLKH 295
           +  S     + +V  + G+P+S  R Q+   L   SF+  E  TL H
Sbjct: 281 LCASAERGGNRVVMAINGLPSSNARAQEGERLFEWSFVNFENATLVH 327


>gi|261855867|ref|YP_003263150.1| beta-lactamase [Halothiobacillus neapolitanus c2]
 gi|261836336|gb|ACX96103.1| Beta-lactamase [Halothiobacillus neapolitanus c2]
          Length = 425

 Score =  142 bits (358), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 134/232 (57%), Gaps = 2/232 (0%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S +++D N  Q+   K  DEP  PAS+TK+MT Y++F  L+S  +H++  + +SK A   
Sbjct: 81  SYVLLDANTGQIIVQKNADEPVPPASITKLMTSYLVFSALKSGNIHMDDMVTISKKAWEM 140

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             SK++++     + +  ++ +I +S ND +TA  E++ G+E+ F  LM+  AKK+GM  
Sbjct: 141 QGSKMFIEVGKQVSVKNLLMGMIVQSGNDAATALAEYVGGNEQSFVSLMNATAKKLGMTK 200

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-KYFSIRKFRYRNRIITNHNKLLN 232
           T Y++ +G      + +ARD + L   L K+FP YY ++F  + F +      N  KLL 
Sbjct: 201 THYEDPTGWPADGHVMSARDISTLFNALVKHFPNYYHEFFRQKVFTWNGIKQYNREKLLF 260

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           + + +DG KTG+T  +GF + TS +     ++AVV+G  +   R+ +A  L+
Sbjct: 261 RDNWVDGGKTGHTEEAGFCLATSGQQNGMRLIAVVLGTESDDARNNEAEALL 312


>gi|160915294|ref|ZP_02077507.1| hypothetical protein EUBDOL_01303 [Eubacterium dolichum DSM 3991]
 gi|158433093|gb|EDP11382.1| hypothetical protein EUBDOL_01303 [Eubacterium dolichum DSM 3991]
          Length = 414

 Score =  142 bits (358), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 80/215 (37%), Positives = 127/215 (59%), Gaps = 6/215 (2%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPAS+TKMM L +I+E L   +L L+  +  S+ AA+   S+++L+ +   + E  I ++
Sbjct: 87  YPASMTKMMGLLLIYEALHDGQLQLDDMVTTSEFAASMGGSQVFLEPQETLSAEDMIKSI 146

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
              SAND   A GE ++GS + F   M+ KAK++GM NT + NA+GLHD    TTA+D A
Sbjct: 147 CIASANDAMVAMGEHLAGSHEAFVNKMNRKAKELGMNNTHFMNATGLHDDKHYTTAKDMA 206

Query: 196 ILG-ILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
           +LG  LL++   +  K  S     IR+   +   + N NKLL ++  +DG+KTG+T+ + 
Sbjct: 207 LLGQALLKEGGEELLKITSTYDAYIREDSDKKFWLVNTNKLLKQVEGVDGLKTGFTKEAL 266

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
             I  S + K+  ++AVVMG   ++ R+  A  L+
Sbjct: 267 SCITVSAKRKELRLIAVVMGASNAKARNAIASGLL 301


>gi|218886223|ref|YP_002435544.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218757177|gb|ACL08076.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 481

 Score =  142 bits (357), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 133/232 (57%), Gaps = 3/232 (1%)

Query: 55  SSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S++++D++  ++  ++Q  DEP  PASLTK++++Y+  + +++ K  L   + VS+ A +
Sbjct: 81  SAMLLDMSTGRII-YEQNADEPIPPASLTKVLSMYVALDQVRAGKASLKDTVKVSRRAFS 139

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S+++LK+    T +  +  +   S ND S A  E I G+   F  +M+ KA+ +GM+
Sbjct: 140 TGGSRMFLKQGETLTLDDLLEGMAVSSGNDASVATAEHIGGNVDNFVQMMNAKARALGMK 199

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           N++++N  GL    Q TTARD   L       +P+  +Y S R  ++   I TN N LL 
Sbjct: 200 NSVFRNPHGLPAAGQHTTARDMLALSRAYLAQYPEALRYHSTRYIKHNKVITTNKNPLLG 259

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                DG+KTG+   SG+N++++++     ++AVV+G  T+Q R Q+   L+
Sbjct: 260 NCEGADGLKTGWVFASGYNLISTVKRGKTRLLAVVLGAETTQARAQEVNRLV 311


>gi|323524598|ref|YP_004226751.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp.
           CCGE1001]
 gi|323381600|gb|ADX53691.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp.
           CCGE1001]
          Length = 409

 Score =  142 bits (357), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 136/240 (56%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D   NQ +     DE   PASLTK+MT Y++FE LQ+KK+ ++  +  S+     
Sbjct: 54  SWVLVDATSNQVLASGNPDERVEPASLTKLMTAYLVFEALQTKKIAMDQTVTPSEAVRRV 113

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S+++++     T    +  +I +S ND + A  E + GSE +F  +M+ +A+++GM
Sbjct: 114 RTDESRMFVEANKPVTVHDLVYGMIVQSGNDAAIALAELVGGSEAQFVNMMNTEAQRLGM 173

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
            +T + + +G+ D    TTA D A+L   L ++FP YY  FS+++F Y      N N+LL
Sbjct: 174 THTHFADVNGMPDPQHYTTAGDLAVLSARLIRDFPDYYNIFSVKEFTYNKIKQPNRNRLL 233

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLR--YKDDP-----IVAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++ S +      P     +V+V+MG     +R Q +L+++
Sbjct: 234 WIDPTVDGLKTGHTQAAGYCLIASAKRSLPGTPDASRRLVSVMMGETKEHDRVQDSLKML 293


>gi|152978379|ref|YP_001344008.1| Serine-type D-Ala-D-Ala carboxypeptidase [Actinobacillus
           succinogenes 130Z]
 gi|150840102|gb|ABR74073.1| Serine-type D-Ala-D-Ala carboxypeptidase [Actinobacillus
           succinogenes 130Z]
          Length = 395

 Score =  142 bits (357), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 83/248 (33%), Positives = 143/248 (57%), Gaps = 10/248 (4%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           I++D N    +  F  D+ +YPASLTKMMT Y + + ++  K+H N Q+ + +++  +N 
Sbjct: 44  ILMDYNSGAVLAAFNPDQRQYPASLTKMMTSYAVGDAMKQGKIHPNDQVTIGESSWGKNF 103

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L      +       +I  S ND   A  E +SGS ++F  LM+   ++ G++
Sbjct: 104 PGSSKMFLNLNQQVSVADLNRGVIVVSGNDACVALAEHVSGSTEQFVALMNKYVQQFGLK 163

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           NT +    GL D NQ ++ARD A++GI +  + P+ YK ++ + F +      N N LL 
Sbjct: 164 NTNFTTPHGLDDPNQYSSARDMALIGIRIIHDLPEEYKIYAEKDFTFNKIKQPNRNGLLW 223

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELI----TS 286
           +K  N+DG+KTG+T  +G+N+V S    ++  +++VVMG+PT + R+ ++ +L+     S
Sbjct: 224 DKSMNVDGMKTGHTSQAGYNLVASATNANNMRLISVVMGVPTYKGREVESKKLLQWGFNS 283

Query: 287 FLEKKTLK 294
           F   KTL+
Sbjct: 284 FDTFKTLE 291


>gi|238028745|ref|YP_002912976.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           glumae BGR1]
 gi|237877939|gb|ACR30272.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           glumae BGR1]
          Length = 433

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 136/241 (56%), Gaps = 12/241 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D + NQ +     DE   PASLTK+MT Y++FE L SKK+ +   +  S+     
Sbjct: 79  SWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALASKKISMEQIVTPSEAVRRV 138

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S+++++     +    +  +I +S ND + A  E + GSE +F  +M+ +A+K+GM
Sbjct: 139 GTDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQKLGM 198

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           + T + + +G+ D    TTA D A+L   L ++FP YY  FS++ F Y +    N N+LL
Sbjct: 199 KGTHFADVNGMPDPQHYTTAGDLAVLSARLIRDFPDYYNIFSVKDFTYNHIRQPNRNRLL 258

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP--------IVAVVMGMPTSQERDQKALEL 283
                +DG+KTG+T+ +G+ ++ S + +  P        +V V+MG P   +R Q +L++
Sbjct: 259 WIDPTVDGLKTGHTQAAGYCLIASAK-RPLPGSADVSRRLVTVMMGEPRESDRVQDSLKM 317

Query: 284 I 284
           +
Sbjct: 318 L 318


>gi|91776847|ref|YP_546603.1| penicillin-binding protein 6 [Methylobacillus flagellatus KT]
 gi|91710834|gb|ABE50762.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Methylobacillus flagellatus KT]
          Length = 385

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 131/219 (59%), Gaps = 4/219 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT Y+ F+ +++  L L   +PVS  A     SK++++     T ++ +  +I
Sbjct: 64  PASLTKIMTAYLAFKAIKNGHLTLTQTLPVSVKAWKVEGSKMFIEPNKPVTVDELLHGMI 123

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E I+GSE+ FA LM+ +A ++GM+ T Y NA+GL D    TTA D A+
Sbjct: 124 IQSGNDASIALAEGIAGSEEGFAELMNKEAARLGMKGTHYVNATGLPDPQHYTTAHDLAL 183

Query: 197 LGILLRKNFPQYYK-YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           L   L ++FP +YK  +S++++ Y      N N+LL     +DG+KTG+T+++G+ +VTS
Sbjct: 184 LAAALIRDFPDHYKRLYSMKEYTYNKISQPNRNRLLWLDPYVDGMKTGHTKSAGYCLVTS 243

Query: 256 LRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKK 291
            +  D  +++VV+G P+   R    QK L     F E K
Sbjct: 244 AKRGDTRMISVVLGAPSDAARATESQKLLNYGFQFYESK 282


>gi|77464119|ref|YP_353623.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodobacter
           sphaeroides 2.4.1]
 gi|77388537|gb|ABA79722.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodobacter
           sphaeroides 2.4.1]
          Length = 355

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 125/220 (56%), Gaps = 8/220 (3%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           EP  PAS++K+MTL ++FE L+  ++ + T   VS  A     SK++++E+   T E+ I
Sbjct: 14  EPLPPASMSKLMTLNMLFEALRDGRVTMETTFAVSTKAKQMGGSKMFVEERDRPTVEELI 73

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             +I  S ND      E ++G+E  FA  M+ +AK +GM ++ + N+SG  D     +  
Sbjct: 74  HGIIVNSGNDACVVVAEGLNGTESDFARAMTVRAKALGMTDSTFTNSSGWPDPGHRMSVH 133

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT---NHNKLL----NKMHNIDGIKTGYT 245
           D  IL + L + FP++Y YFS  +F Y++R+ +   N N LL    N     DG+KTG+T
Sbjct: 134 DLGILAVRLIEEFPEFYPYFSHTEFNYKDRVPSNANNRNPLLRLGPNGDWTADGLKTGHT 193

Query: 246 RNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELI 284
           + +G+ +V S   KD   IV V+ G+ T  +R Q+  +++
Sbjct: 194 QEAGYGLVGSAVQKDGRRIVFVLTGLATEADRAQEGEQIV 233


>gi|89070235|ref|ZP_01157559.1| D-alanyl-D-alanine carboxypeptidase [Oceanicola granulosus
           HTCC2516]
 gi|89044155|gb|EAR50313.1| D-alanyl-D-alanine carboxypeptidase [Oceanicola granulosus
           HTCC2516]
          Length = 411

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 123/218 (56%), Gaps = 5/218 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DEP  PAS++K+MTLY+ FE ++S +L L+ Q+PVS+ A +   S ++L      T E  
Sbjct: 52  DEPLPPASMSKLMTLYMAFEAIESGRLRLDEQLPVSEHAMSYGGSTMFLDTTDRPTVEDL 111

Query: 132 ILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           +  +I  S ND S    E +S  G+E  FA LM+ + ++IG+ N+ + N++G    +   
Sbjct: 112 LRGVIVLSGNDASAVLAEALSPDGTEAGFARLMTERGRQIGLTNSTFANSNGWPAPDHRM 171

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT---NHNKLLNKMHNIDGIKTGYTR 246
           + RD  ++   L ++FP  Y  F+ + F Y  R  T   N N LL      DG+KTG+T 
Sbjct: 172 SVRDLGVVATRLIEDFPDLYPMFAEQTFEYDGRAPTNVRNRNPLLGLGIGADGLKTGHTE 231

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +G+ +V S   +D  +V V+ G+ ++ ER +++  ++
Sbjct: 232 EAGYGLVGSAVQEDRRVVFVLAGLDSTAERAEESERVV 269


>gi|84499966|ref|ZP_00998232.1| D-alanyl-D-alanine carboxypeptidase [Oceanicola batsensis HTCC2597]
 gi|84391900|gb|EAQ04168.1| D-alanyl-D-alanine carboxypeptidase [Oceanicola batsensis HTCC2597]
          Length = 406

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 126/239 (52%), Gaps = 9/239 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D P  PAS++K+MTLYI FE L+  +L L+ ++PVS  A +   S ++L        E  
Sbjct: 54  DMPLPPASMSKLMTLYIAFEALRDGRLRLDEELPVSSHAMSYGGSTMFLDTTDRVKVEDL 113

Query: 132 ILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           +  +I  S ND      E +S  G+E  FA  M+ +A+K+GM N+ + N++G        
Sbjct: 114 LRGIIVLSGNDACVVLAEALSPDGTEAGFARYMTQRAQKMGMTNSTFANSNGWPAAGHRM 173

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII---TNHNKLLNKMHNIDGIKTGYTR 246
           + RD A+L   L ++FP +Y  F+ R F +  R     TN N LL      DG+KTG+T 
Sbjct: 174 SMRDLALLAARLIEDFPNFYPLFAERTFAFDGRAPQNNTNRNPLLGLGIGADGLKTGHTE 233

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT----SFLEKKTLKHQQTHRK 301
            +G+ +V S +  D  ++  + G+PT+  R Q++  +I      F +K  LK  +T  K
Sbjct: 234 EAGYGLVGSAKQGDRRVIFALSGLPTTAARAQESEAIINWAFRQFTQKSLLKAGETVTK 292


>gi|221639986|ref|YP_002526248.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
           KD131]
 gi|221160767|gb|ACM01747.1| Serine-type D-Ala-D-Ala carboxypeptidase precursor [Rhodobacter
           sphaeroides KD131]
          Length = 389

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 125/220 (56%), Gaps = 8/220 (3%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           EP  PAS++K+MTL ++FE L+  ++ + T   VS  A     SK++++E+   T E+ I
Sbjct: 48  EPLPPASMSKLMTLNMLFEALRDGRVTMETTFAVSTKAKQMGGSKMFVEERDRPTVEELI 107

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             +I  S ND      E ++G+E  FA  M+ +AK +GM ++ + N+SG  D     +  
Sbjct: 108 HGIIVNSGNDACVVVAEGLNGTESDFARAMTVRAKALGMTDSTFTNSSGWPDPGHRMSVH 167

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT---NHNKLL----NKMHNIDGIKTGYT 245
           D  IL + L + FP++Y YFS  +F Y++R+ +   N N LL    N     DG+KTG+T
Sbjct: 168 DLGILAVRLIEEFPEFYPYFSHTEFNYKDRVPSNANNRNPLLRLGPNGDWTADGLKTGHT 227

Query: 246 RNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELI 284
           + +G+ +V S   KD   IV V+ G+ T  +R Q+  +++
Sbjct: 228 QEAGYGLVGSAVQKDGRRIVFVLTGLATEADRAQEGEQIV 267


>gi|134297080|ref|YP_001120815.1| penicillin-binding protein 6 [Burkholderia vietnamiensis G4]
 gi|134140237|gb|ABO55980.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Burkholderia vietnamiensis G4]
          Length = 437

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 135/239 (56%), Gaps = 9/239 (3%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D   N  +     DE   PASLTK+MT Y++FE L  KK+ +   +  S+     
Sbjct: 83  SWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSEAVRRV 142

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  LM+++A+++GM
Sbjct: 143 GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQFVTLMNDEAQRLGM 202

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           + T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F+Y N    N N+LL
Sbjct: 203 KGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFKYNNIRQGNRNRLL 262

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI------VAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++ S +     +      V+V+MG P   +R   +++++
Sbjct: 263 WLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEPKEGDRTADSMKML 321


>gi|110680629|ref|YP_683636.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter denitrificans OCh
           114]
 gi|109456745|gb|ABG32950.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter denitrificans OCh
           114]
          Length = 389

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 131/233 (56%), Gaps = 15/233 (6%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKK----LHLNTQIPVSKTAATQNPS 116
           +NKN       D P  PAS++K+MTLY+ FE ++  K    L LN ++PVS+ A +   S
Sbjct: 40  LNKNA------DAPLPPASMSKLMTLYMAFEAVRRGKADGGLDLNERLPVSEHAQSYGGS 93

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKIGMQNT 174
            ++L+     + E  +  +I  S ND      E +S  G+E  FA +M+ +A+++GM N+
Sbjct: 94  SMFLRSGETVSVEDLLRGIIVVSGNDACVVIAEALSPDGTEYGFARMMTQRAQQLGMNNS 153

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT---NHNKLL 231
           ++ NASG      + + RD AIL   L  +FP++Y  F+  +F + NR+ +   N N +L
Sbjct: 154 VFINASGWPQTGHVMSMRDLAILADRLITDFPEFYPMFAETEFPFDNRVPSNSRNRNPVL 213

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                 DG+KTG+T+ +G+ +V S +  D  I+ V+ G+ T+  R Q++  ++
Sbjct: 214 TMGIGADGLKTGHTQEAGYGLVGSAKQGDRRIIFVITGLETTAARAQESQAIV 266


>gi|307728308|ref|YP_003905532.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp.
           CCGE1003]
 gi|307582843|gb|ADN56241.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp.
           CCGE1003]
          Length = 409

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 143/264 (54%), Gaps = 14/264 (5%)

Query: 35  LFLSIIMISMASELHAKPKY----SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYII 89
           + L   ++S A+     P      S +++D   NQ +     DE   PASLTK+MT Y++
Sbjct: 30  VVLPATLVSSAAFAQVPPPAVNARSWVLVDATSNQVLASGNPDERVEPASLTKLMTAYLV 89

Query: 90  FEYLQSKKLHLNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           FE LQ+KK+ ++  +   +       + S+++++     T    +  +I +S ND + A 
Sbjct: 90  FEALQTKKITMDQTVTPGEAVRRVRTDESRMFIEANKPVTVHDLVYGMIVQSGNDAAIAL 149

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E + GSE +F  +M+ +A+++GM +T + + +G+ D    TTA D A+L   L ++FP 
Sbjct: 150 AELVGGSEAQFVNMMNTEAQRLGMTHTHFADVNGMPDPQHYTTAGDLAVLSARLIRDFPD 209

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR--YKDDP--- 262
           YY  FS+++F Y      N N+LL     +DG+KTG+T+ +G+ ++ S +      P   
Sbjct: 210 YYNIFSVKEFTYNKIKQPNRNRLLWIDPTVDGLKTGHTQAAGYCLIASAKRSLPGTPDAS 269

Query: 263 --IVAVVMGMPTSQERDQKALELI 284
             +V+V+MG     +R Q +L+++
Sbjct: 270 RRLVSVMMGETKEHDRVQDSLKML 293


>gi|17545046|ref|NP_518448.1| penicillin-binding transmembrane protein [Ralstonia solanacearum
           GMI1000]
 gi|17427336|emb|CAD13855.1| probable penicillin-binding (d-alanyl-d-alanine carboxypeptidase)
           transmembrane protein [Ralstonia solanacearum GMI1000]
          Length = 397

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 142/240 (59%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           + ++ DV   Q + G   DE   PASLTK+MT Y+  E ++  KL  +  +  ++T  + 
Sbjct: 43  AWMLTDVTSGQVLGGGNVDERIEPASLTKLMTAYLAVEAVRDGKLKYDQMLTPTETVRSV 102

Query: 113 -QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S+++L+     +    +  LI +S ND +    E + G+E  F +LM+ +A+++GM
Sbjct: 103 KTDESRMFLQPGKPVSVRDLLQGLIVQSGNDAALVLAEAVGGTETNFVMLMNREAERLGM 162

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           + T + NA+GL D N  TTARD +IL   L ++FP+ YK++S ++F Y N    N N+LL
Sbjct: 163 KGTHFMNAAGLPDPNHYTTARDLSILTAALIRDFPEDYKFYSQKEFTYNNIKQPNRNRLL 222

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLR--YKDDP-----IVAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+++G+ ++TS +    D P     +++V++G  + Q R Q++L+++
Sbjct: 223 WIDPTVDGVKTGHTKSAGYCLITSAKRPLPDVPNASRRLLSVMIGTKSEQVRTQESLKVL 282


>gi|188591036|ref|YP_001795636.1| d-alanyl-d-alanine carboxypeptidase; penicillin-binding protein 6a
           [Cupriavidus taiwanensis LMG 19424]
 gi|170937930|emb|CAP62914.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
           [Cupriavidus taiwanensis LMG 19424]
          Length = 399

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 139/240 (57%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S ++ DV   Q    +  + R  PASLTK+MT Y+ FE L+ K+L L+  +  +      
Sbjct: 45  SWMLYDVTSGQALASQNADARIEPASLTKLMTAYLAFEALKEKRLTLDQAVVPTNLVLKV 104

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S+++++     T +  +L LI +S ND + A  E + GSE+ F  +M+ +A+++GM
Sbjct: 105 KSDESRMFIEPNKPVTVQDLLLGLIVQSGNDAALALAEAVGGSEEGFVAMMNREAQRMGM 164

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT + N  G+ D N  TTA D A L   L K+FP+YY  +S ++F Y      N N+LL
Sbjct: 165 KNTHFTNTDGIPDPNHYTTAVDLATLTTRLIKDFPEYYSMYSQKEFTYNKIRQPNRNRLL 224

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLR--YKDDP-----IVAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+++G+ +++S +    + P     ++++V+G  T Q R Q++L+++
Sbjct: 225 YIDSTVDGVKTGHTKSAGYCLISSAKRPLANVPDGSRRLISIVIGTTTEQVRTQESLKIL 284


>gi|325132290|gb|EGC54983.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
           M6190]
          Length = 389

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 145/252 (57%), Gaps = 10/252 (3%)

Query: 48  LHAKPKYSS--------IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +HA P + +        IVID+   Q+   K  + P  PA+LT++MT Y++F+ ++S  +
Sbjct: 32  VHAAPTFQTPETLTAAHIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGNI 91

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS-TAFGEFISGSEKK 157
                + + ++A     S+++++     +T++ +  +I  SAND + T  G   +GS + 
Sbjct: 92  RSEENLKIPESAWASEGSRMFVRPSDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIEN 151

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A L   L ++FP+YY  FSI+ F
Sbjct: 152 FVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSF 211

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           +++N    N N LL + +N++G+K G+T + G+N+  S       I+ + +G  +++ R 
Sbjct: 212 KFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRA 271

Query: 278 QKALELITSFLE 289
               +L+   L+
Sbjct: 272 SDNSKLLNWALQ 283


>gi|258542238|ref|YP_003187671.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633316|dbj|BAH99291.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636375|dbj|BAI02344.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639428|dbj|BAI05390.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642484|dbj|BAI08439.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645539|dbj|BAI11487.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648592|dbj|BAI14533.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651645|dbj|BAI17579.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654636|dbj|BAI20563.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 406

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/213 (35%), Positives = 121/213 (56%), Gaps = 1/213 (0%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   P+SLTKMMT Y+ F  L+S +L L+  +PVS+ A     S++++      + +  
Sbjct: 85  DERMPPSSLTKMMTAYVTFGMLKSGRLKLDQMLPVSERAWRMQGSRMFVPLGQSVSVQDL 144

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           I  ++ +S ND      E ISGSE++F  LM++ A K+G+ N+ + NA+G   +N   +A
Sbjct: 145 IQGMVIQSGNDACIVIAEGISGSEEQFVALMNDTATKLGLTNSHFMNATGWPAENHYMSA 204

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           RD A L + L  +FP+YY +FS ++F +      N N L+ K    DG+KTG+T   GF 
Sbjct: 205 RDVAYLALRLIHDFPEYYHFFSEKEFLFNKIRQENRNSLVVK-GLADGLKTGHTDAGGFG 263

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +  S   +   +V  V G+P+S  R ++A  L+
Sbjct: 264 LCASSEREGRRVVLAVNGLPSSAARGREAERLM 296


>gi|329113407|ref|ZP_08242188.1| D-alanyl-D-alanine carboxypeptidase DacC [Acetobacter pomorum
           DM001]
 gi|326697232|gb|EGE48892.1| D-alanyl-D-alanine carboxypeptidase DacC [Acetobacter pomorum
           DM001]
          Length = 406

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/213 (35%), Positives = 121/213 (56%), Gaps = 1/213 (0%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   P+SLTKMMT Y+ F  L+S +L L+  +PVS+ A     S++++      + +  
Sbjct: 85  DERMPPSSLTKMMTAYVTFGMLKSGRLKLDQMLPVSERAWRMQGSRMFVPLGQSVSVQDL 144

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           I  ++ +S ND      E ISGSE++F  LM++ A K+G+ N+ + NA+G   +N   +A
Sbjct: 145 IQGMVIQSGNDACIVIAEGISGSEEQFVALMNDTATKLGLTNSHFMNATGWPAENHYMSA 204

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           RD A L + L  +FP+YY +FS ++F +      N N L+ K    DG+KTG+T   GF 
Sbjct: 205 RDVAYLALRLIHDFPEYYHFFSEKEFLFNKIRQENRNSLVVK-GLADGLKTGHTDAGGFG 263

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +  S   +   +V  V G+P+S  R ++A  L+
Sbjct: 264 LCASSEREGRRVVLAVNGLPSSAARGREAERLM 296


>gi|325144238|gb|EGC66544.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
           M01-240013]
          Length = 389

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 145/252 (57%), Gaps = 10/252 (3%)

Query: 48  LHAKPKYSS--------IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +HA P + +        IVID+   Q+   K  + P  PA+LT++MT Y++F+ ++S  +
Sbjct: 32  VHAAPTFQTPETLTAAHIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGNI 91

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS-TAFGEFISGSEKK 157
                + + ++A     S+++++     +T++ +  +I  SAND + T  G   +GS + 
Sbjct: 92  RSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIEN 151

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A L   L ++FP+YY  FSI+ F
Sbjct: 152 FVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSF 211

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           +++N    N N LL + +N++G+K G+T + G+N+  S       I+ + +G  +++ R 
Sbjct: 212 KFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRA 271

Query: 278 QKALELITSFLE 289
               +L+   L+
Sbjct: 272 SDNSKLLNWALQ 283


>gi|83648479|ref|YP_436914.1| D-alanyl-D-alanine carboxypeptidase [Hahella chejuensis KCTC 2396]
 gi|83636522|gb|ABC32489.1| D-alanyl-D-alanine carboxypeptidase [Hahella chejuensis KCTC 2396]
          Length = 386

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 136/244 (55%), Gaps = 4/244 (1%)

Query: 45  ASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHL 100
           AS + + P+ ++   I++D     +   K  E R P ASLTKMMT Y++   +    +  
Sbjct: 26  ASLIPSAPQIAASSYILMDAESGAIIVEKNSEERLPPASLTKMMTSYVLDYEVDQGNVSF 85

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
           N + P+S  A     SK++++E T       +  +I +S ND S A  EF++GSE  FA 
Sbjct: 86  NDEAPISVKAWKTGGSKMFVREGTSVRLGDLLKGIIIQSGNDASVAVAEFLAGSEDAFAS 145

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
           +M+  A+++GM NT + NA+GL  +N  ++A D A L   +  +FP  Y  +S + F Y 
Sbjct: 146 MMNQHAQRLGMSNTNFANATGLPSENHYSSAHDLAKLAKAIINDFPNQYPLYSEKYFTYN 205

Query: 221 NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           N    N N LL +  ++DG+KTG+T  +G+ +V+S       +++VVMG  + + R ++ 
Sbjct: 206 NIRQPNRNLLLWRDKSVDGLKTGHTEEAGYCLVSSAVRDGMRLISVVMGAKSEEARARET 265

Query: 281 LELI 284
           L+L+
Sbjct: 266 LKLL 269


>gi|325135913|gb|EGC58523.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
           M0579]
          Length = 389

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 140/235 (59%), Gaps = 2/235 (0%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           IVID+   Q+   K  + P  PA+LT++MT Y++F+ ++S  +     + + ++A     
Sbjct: 49  IVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASEG 108

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVS-TAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           S+++++     +T++ +  +I  SAND + T  G   +GS + F   M+ +A+++GM+NT
Sbjct: 109 SRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNT 168

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
           ++KN +GL  + Q++TA+D A L   L ++FP+YY  FSI+ F+++N    N N LL + 
Sbjct: 169 VFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRD 228

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           +N++G+K G+T + G+N+  S       I+A+ +G  +++ R     +L+   L+
Sbjct: 229 NNVNGLKAGHTESGGYNLAVSYSGNGRHILAITLGSESAETRASDNSKLLNWALQ 283


>gi|52425884|ref|YP_089021.1| DacC protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307936|gb|AAU38436.1| DacC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 394

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 10/248 (4%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           +V+D N    +     D+ +YPASLTKMMT Y+I + L+  K+H    I V +++  +N 
Sbjct: 44  VVMDYNSGAVLASLNPDQRQYPASLTKMMTSYVIGDALKQGKIHNTDTITVGESSWGKNF 103

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L      T EQ    +I  S ND   A  E +SG+   F   M+  A++ G++
Sbjct: 104 PDSSKMFLNLNQQVTVEQLNRGIIIVSGNDACVAMAEHVSGTTDNFINSMNKYAEQFGLK 163

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           NT +    GL D NQ ++ARD AI+G  + ++ P+ YK ++ + F +      N N LL 
Sbjct: 164 NTHFTTVHGLDDANQYSSARDMAIIGAHIIRDLPEEYKIYAEKDFTFNKIKQPNRNGLLW 223

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELI----TS 286
           +K  N+DG+KTG+T  +G+N+V S    D+  ++ VVMG+PT + R+ ++ +L+     S
Sbjct: 224 DKTINVDGMKTGHTSQAGYNLVASATNADNMRLITVVMGVPTYKGREVESKKLLQWAFNS 283

Query: 287 FLEKKTLK 294
           F   KTL+
Sbjct: 284 FDTFKTLE 291


>gi|121634652|ref|YP_974897.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria
           meningitidis FAM18]
 gi|120866358|emb|CAM10101.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria
           meningitidis FAM18]
          Length = 389

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 145/252 (57%), Gaps = 10/252 (3%)

Query: 48  LHAKPKYSS--------IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +HA P + +        IVID+   Q+   K  + P  PA+LT++MT Y++F+ ++S  +
Sbjct: 32  VHAAPTFQTPETLTAAHIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGNI 91

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS-TAFGEFISGSEKK 157
                + + ++A     S+++++     +T++ +  +I  SAND + T  G   +GS + 
Sbjct: 92  RSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIEN 151

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A L   L ++FP+YY  FSI+ F
Sbjct: 152 FVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSF 211

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           +++N    N N LL + +N++G+K G+T + G+N+  S       I+ + +G  +++ R 
Sbjct: 212 KFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRA 271

Query: 278 QKALELITSFLE 289
               +L+   L+
Sbjct: 272 SDNSKLLNWALQ 283


>gi|325127981|gb|EGC50880.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
           N1568]
          Length = 389

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 145/252 (57%), Gaps = 10/252 (3%)

Query: 48  LHAKPKYSS--------IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +HA P + +        IVID+   Q+   K  + P  PA+LT++MT Y++F+ ++S  +
Sbjct: 32  VHAAPTFQTPETLTAAHIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGNI 91

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS-TAFGEFISGSEKK 157
                + + ++A     S+++++     +T++ +  +I  SAND + T  G   +GS + 
Sbjct: 92  RSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIEN 151

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A L   L ++FP+YY  FSI+ F
Sbjct: 152 FVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSF 211

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           +++N    N N LL + +N++G+K G+T + G+N+  S       I+ + +G  +++ R 
Sbjct: 212 KFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRA 271

Query: 278 QKALELITSFLE 289
               +L+   L+
Sbjct: 272 SDNSKLLNWALQ 283


>gi|296313509|ref|ZP_06863450.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria polysaccharea
           ATCC 43768]
 gi|296839954|gb|EFH23892.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria polysaccharea
           ATCC 43768]
          Length = 389

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 144/252 (57%), Gaps = 10/252 (3%)

Query: 48  LHAKPKYSS--------IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +HA P   +        IVID+   Q    K  + P  PA+LT++MT Y++F+ ++S  +
Sbjct: 32  VHAAPTLQTPETLTAAHIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSGNI 91

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS-TAFGEFISGSEKK 157
                + + ++A     S+++++     +T++ +  +I  SAND + T  G   +GS + 
Sbjct: 92  QSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIEN 151

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A+L   L ++FP+YY  FSI+ F
Sbjct: 152 FVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLALLSEALMRDFPEYYPLFSIKSF 211

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           +++N    N N LL + +N++G+K G+T + G+N+  S       I+ + +G  +++ R 
Sbjct: 212 KFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRA 271

Query: 278 QKALELITSFLE 289
               +L+   L+
Sbjct: 272 SDNSKLLNWALQ 283


>gi|78067705|ref|YP_370474.1| penicillin-binding protein 6 [Burkholderia sp. 383]
 gi|77968450|gb|ABB09830.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Burkholderia sp. 383]
          Length = 437

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 134/239 (56%), Gaps = 9/239 (3%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D   N  +     DE   PASLTK+MT Y++FE L  KK+ +   +  S+     
Sbjct: 83  SWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSEAVRRV 142

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  LM+++A ++GM
Sbjct: 143 GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQFVTLMNDEAARLGM 202

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           + T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F+Y N    N N+LL
Sbjct: 203 KGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYSIFSEKEFKYNNIRQGNRNRLL 262

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI------VAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++ S +     +      V+V+MG     ER Q +++++
Sbjct: 263 WLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEQKEGERTQDSMKML 321


>gi|170691583|ref|ZP_02882748.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia graminis
           C4D1M]
 gi|170143788|gb|EDT11951.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia graminis
           C4D1M]
          Length = 409

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 135/240 (56%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D   NQ +     DE   PASLTK+MT Y++FE LQ+KK+ ++  +   +     
Sbjct: 54  SWVLVDATSNQVLASGNPDERVEPASLTKLMTAYLVFEALQTKKITMDQTVTPGEAVRRV 113

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S+++++     T    +  +I +S ND + A  E + GSE +F  +M+ +A+++GM
Sbjct: 114 RTDESRMFIEANKPVTVHDLVYGMIVQSGNDAAIALAELVGGSESQFVNMMNTEAQRLGM 173

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T + + +G+ D    TTA D A+L   L ++FP YY  FS++ F Y      N N+LL
Sbjct: 174 KHTHFADVNGMPDPQHYTTAGDLAVLSARLIRDFPDYYNIFSVKDFTYNKIKQPNRNRLL 233

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLR--YKDDP-----IVAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++ S +      P     +V+V+MG     +R Q +L+++
Sbjct: 234 WIDPTVDGLKTGHTQAAGYCLIASAKRSLPGTPDASRRLVSVMMGETKEHDRVQDSLKML 293


>gi|330814086|ref|YP_004358325.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487181|gb|AEA81586.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 379

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/263 (34%), Positives = 151/263 (57%), Gaps = 14/263 (5%)

Query: 34  ILFLSIIMISM--ASELHAKPKYSSIVIDVNKNQMTGFKQDEPR--YPASLTKMMTLYII 89
           IL +S  +I    A+ L    K  +I++DVN  Q+  FK++E     PAS+TK+MT  I 
Sbjct: 6   ILLISFFLIQAYNANALITSAK-QAILMDVNSGQVL-FKKNENEKISPASITKVMTSIIA 63

Query: 90  FEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           F+ ++S +L LN +  VS  A   A Q  S +++      T    +  +I  S ND   A
Sbjct: 64  FDLIKSGELKLNEKFLVSNKAWRMAKQGYSSMFIVPNDRITVLNLLKGIIIASGNDACIA 123

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E I+GSE  FA +M++KAK IGM NT + N+SG++ ++  +T  D +++ + L K FP
Sbjct: 124 LAEGIAGSEAAFASMMNDKAKSIGMTNTNFSNSSGIYSEDNYSTVSDISLMSVYLIKEFP 183

Query: 207 QYYKYFSIRKFRYR----NRII-TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           + YK ++ R F +     N I  +N N LL K   +DGIKTG+  +SG+++  ++   + 
Sbjct: 184 ELYKMYAERTFTWDRTGGNPITQSNRNTLLYKNSKVDGIKTGHLNDSGYSLAATMLVNNR 243

Query: 262 PIVAVVMGMPTSQERDQKALELI 284
            I++VV G  + +ER +++L+L+
Sbjct: 244 RILSVVSGTNSQKERAKESLKLL 266


>gi|254673307|emb|CBA08444.1| putative penicillin-binding protein precursor [Neisseria
           meningitidis alpha275]
          Length = 389

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 144/252 (57%), Gaps = 10/252 (3%)

Query: 48  LHAKPKYSS--------IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +HA P + +        IVID+   Q    K  + P  PA+LT++MT Y++F+ ++S  +
Sbjct: 32  VHAAPTFQTPETLTAAHIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSGNI 91

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS-TAFGEFISGSEKK 157
                + + ++A     S+++++     +T++ +  +I  SAND + T  G   +GS + 
Sbjct: 92  QSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIEN 151

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A L   L ++FP+YY  FSI+ F
Sbjct: 152 FVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSF 211

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           +++N    N N LL + +N++G+K G+T + G+N+  S       I+ + +G  +++ R 
Sbjct: 212 KFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRA 271

Query: 278 QKALELITSFLE 289
               +L+   L+
Sbjct: 272 SDNSKLLNRALQ 283


>gi|58584548|ref|YP_198121.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|58418864|gb|AAW70879.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
          Length = 370

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 74/213 (34%), Positives = 122/213 (57%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   P+S++K+MTLY+ F+YL++  + +  +  VS+ A  +  S ++LKE    + ++ 
Sbjct: 49  DEKMSPSSMSKLMTLYVAFDYLKAGIIDMKDKFRVSRKAWERKGSSMFLKEGQSVSVKEL 108

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  + T S ND      E I+GSE+ F + M+  A+ + + ++ + N+SG  DK+   +A
Sbjct: 109 LEGVTTVSGNDACITLAEGIAGSEENFVVEMNEVAQNLNLSDSYFVNSSGWPDKDHFMSA 168

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +D  +L   +  +FP+YY  FS +   Y + I  N N LL     +DG+KTGYT   G+ 
Sbjct: 169 KDLVVLAKRIFTDFPEYYDLFSKQYLTYNDIIQKNKNLLLFHDIGVDGLKTGYTNAGGYG 228

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           IV S +  D  I AVV G+ T +ER ++A  LI
Sbjct: 229 IVISAKRNDRRIFAVVNGLNTEKERIEEAKRLI 261


>gi|186474981|ref|YP_001856451.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia phymatum
           STM815]
 gi|184191440|gb|ACC69405.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia phymatum
           STM815]
          Length = 409

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/241 (32%), Positives = 135/241 (56%), Gaps = 12/241 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D   NQ +     DE   PASLTK+MT Y+ FE L SKK+ ++  I  S+     
Sbjct: 54  SWVLVDATSNQVLASGNPDERVEPASLTKLMTAYLTFEALASKKITMDQSINPSEAVRRV 113

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S+++++     T    +  +I +S ND + A  E + GSE +F  +M+ +A+K+GM
Sbjct: 114 RNDESRMFIEANKPVTVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQKLGM 173

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT + + +G+ D    TTA D AIL   L +++P YY  FS+++F Y      N N+LL
Sbjct: 174 KNTHFADVNGMPDPQHYTTAGDLAILSARLIRDYPDYYNIFSVKEFTYNKIKQPNRNRLL 233

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP--------IVAVVMGMPTSQERDQKALEL 283
                +DG+KTG+T+ +G+ ++ S + +  P        +V V+MG     +R Q +L++
Sbjct: 234 WIDPTVDGLKTGHTQAAGYCLIASAK-RSLPGVPDASRRLVTVMMGEQKEHDRVQDSLKM 292

Query: 284 I 284
           +
Sbjct: 293 L 293


>gi|218767989|ref|YP_002342501.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria
           meningitidis Z2491]
 gi|121051997|emb|CAM08306.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria
           meningitidis Z2491]
 gi|319410238|emb|CBY90578.1| D-alanyl-D-alanine carboxypeptidase (DD-peptidase;
           DD-carboxypeptidase; CPase; PBP5) [Neisseria
           meningitidis WUE 2594]
          Length = 389

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 144/251 (57%), Gaps = 10/251 (3%)

Query: 49  HAKPKYSS--------IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           HA P + +        IVID+   Q+   K  + P  PA+LT++MT Y++F+ ++S  + 
Sbjct: 33  HAAPTFQTPETLTAAHIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIR 92

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS-TAFGEFISGSEKKF 158
               + + ++A     S+++++     +T++ +  +I  SAND + T  G   +GS + F
Sbjct: 93  SEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENF 152

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
              M+ +A+++GM+NT++KN +GL  + Q++TA+D A L   L ++FP+YY  FSI+ F+
Sbjct: 153 VQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSFK 212

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           ++N    N N LL + +N++G+K G+T + G+N+  S       I+ + +G  +++ R  
Sbjct: 213 FKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRAS 272

Query: 279 KALELITSFLE 289
              +L+   L+
Sbjct: 273 DNSKLLNWALQ 283


>gi|268590416|ref|ZP_06124637.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rettgeri DSM
           1131]
 gi|291314330|gb|EFE54783.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rettgeri DSM
           1131]
          Length = 403

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/273 (33%), Positives = 149/273 (54%), Gaps = 17/273 (6%)

Query: 30  LMGKILFLSIIMISMASE------LHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPAS 79
           ++G  L L    I+ A+E      + A P   +   I+ID N  + +     D+ R PAS
Sbjct: 14  VLGSALLLMTANIANANETFPNTSIPAAPAIDAEAYILIDYNSGKVLAESNADQRRDPAS 73

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGIL 133
           LTKMMT Y+I + ++S K+  N  + V   A AT NP     S ++LK     +  Q   
Sbjct: 74  LTKMMTSYVIGQAIKSGKIGENDIVTVGNDAWATGNPVFKGSSLMFLKPGDRVSVSQLTR 133

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +  +S ND   A  ++I+G +  F  LM+    K+G++NT ++   GL  + Q ++ARD
Sbjct: 134 GINLQSGNDACVAMADYIAGDQANFVQLMNGYVNKLGLKNTHFQTVHGLDAEGQYSSARD 193

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A++G  L ++ P+ Y  +  ++F + N   TN N LL +K   +DGIKTG+T  +G+N+
Sbjct: 194 MALIGQALVRDVPEEYAIYKEKEFTFNNIRQTNRNGLLWDKSLTVDGIKTGHTNAAGYNL 253

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           V S    D  +++VVMG  +S+ RD ++ +L+T
Sbjct: 254 VASATEGDMRLISVVMGGKSSKGRDAESKKLLT 286


>gi|325206288|gb|ADZ01741.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
           M04-240196]
          Length = 389

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 144/252 (57%), Gaps = 10/252 (3%)

Query: 48  LHAKPKYSS--------IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +HA P + +        IVID+   Q    K  + P  PA+LT++MT Y++F+ ++S  +
Sbjct: 32  VHAAPTFQTPETLTAAHIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSGNI 91

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS-TAFGEFISGSEKK 157
                + + ++A     S+++++     +T++ +  +I  SAND + T  G   +GS + 
Sbjct: 92  QSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIEN 151

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A L   L ++FP+YY  FSI+ F
Sbjct: 152 FVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSF 211

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           +++N    N N LL + +N++G+K G+T + G+N+  S       I+ + +G  +++ R 
Sbjct: 212 KFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRA 271

Query: 278 QKALELITSFLE 289
               +L+   L+
Sbjct: 272 SDNSKLLNWALQ 283


>gi|325133984|gb|EGC56639.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
           M13399]
          Length = 389

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 144/252 (57%), Gaps = 10/252 (3%)

Query: 48  LHAKPKYSS--------IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +HA P + +        IVID+   Q    K  + P  PA+LT++MT Y++F+ ++S  +
Sbjct: 32  VHAAPTFQTPETLTAAHIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSGNI 91

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS-TAFGEFISGSEKK 157
                + + ++A     S+++++     +T++ +  +I  SAND + T  G   +GS + 
Sbjct: 92  QSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIEN 151

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A L   L ++FP+YY  FSI+ F
Sbjct: 152 FVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSF 211

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           +++N    N N LL + +N++G+K G+T + G+N+  S       I+ + +G  +++ R 
Sbjct: 212 KFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRA 271

Query: 278 QKALELITSFLE 289
               +L+   L+
Sbjct: 272 SDNSKLLNWALQ 283


>gi|225023258|ref|ZP_03712450.1| hypothetical protein EIKCOROL_00110 [Eikenella corrodens ATCC
           23834]
 gi|224943903|gb|EEG25112.1| hypothetical protein EIKCOROL_00110 [Eikenella corrodens ATCC
           23834]
          Length = 414

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 132/233 (56%), Gaps = 1/233 (0%)

Query: 58  VIDVNKNQM-TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           V D    QM    K +E   PASLTK+MT Y++F+ L+  KL  +    VS+       S
Sbjct: 67  VYDAQSGQMLASHKLNEHIEPASLTKLMTAYLVFKALEEGKLKPDQTFTVSEQGWKAEGS 126

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
           +++L  KT    +  +  +I +S ND S    E ++GSE +F  LM+ +AK++GM +T +
Sbjct: 127 RMFLDPKTPARVDDLLKGVIVQSGNDASITLAEAVAGSEAQFVQLMNAEAKRLGMNDTHF 186

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN 236
           +N++GL      T+ +D   L   +  ++PQYY  ++I+ + Y N    N N LL +  +
Sbjct: 187 ENSTGLPGAQHYTSVQDLITLSAAIIHDYPQYYPLYAIQSYSYNNITQPNRNLLLYRDPD 246

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           +DG+KTG+T ++G+N+V S +     +++VV+G  + Q R  ++ +L+   L+
Sbjct: 247 VDGMKTGHTDSAGYNLVASSKRNGRRVISVVVGTESMQARAAESSKLLNWALQ 299


>gi|261253676|ref|ZP_05946249.1| D-alanyl-D-alanine carboxypeptidase [Vibrio orientalis CIP 102891]
 gi|260937067|gb|EEX93056.1| D-alanyl-D-alanine carboxypeptidase [Vibrio orientalis CIP 102891]
          Length = 392

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/255 (34%), Positives = 141/255 (55%), Gaps = 8/255 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
           F S I++  A ++ AK     +++D +  ++   K+   +  PASLTKMMT Y+I + L+
Sbjct: 26  FASPIVVPDAPQIAAK---GYVLMDFHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELE 82

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              + L   + +SK A  +N    SK++++  T    E     +I +S ND   A  E I
Sbjct: 83  RGNISLQDDVTISKNAWAKNFPDSSKMFIEVGTTVKVEDLNRGIIVQSGNDACVAMAEHI 142

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  F  LM+  A  IGM++T + N  GL + N  +T  D A+LG  L ++ P  Y+ 
Sbjct: 143 AGSEDAFVDLMNAWADTIGMKDTHFANVHGLDNPNLYSTPYDMALLGSALIRDVPDEYRI 202

Query: 212 FSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL +K  N+DGIKTG+T N+G+++V+S       +VAVVMG 
Sbjct: 203 YSDKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGQMRLVAVVMGT 262

Query: 271 PTSQERDQKALELIT 285
             +  R  ++ +L++
Sbjct: 263 KNANARKSESKKLLS 277


>gi|269467932|gb|EEZ79667.1| D-alanyl-D-alanine carboxypeptidase [uncultured SUP05 cluster
           bacterium]
          Length = 379

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 144/266 (54%), Gaps = 10/266 (3%)

Query: 38  SIIMISMASELHAKPKYSSI------VIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIF 90
           S++ ++  + +   PK  SI      V+D N  + +   K  + R PASLTK+MT Y++F
Sbjct: 19  SVVTLNTQAAIFITPKAPSISASSYIVLDYNSGKVIASHKPHDKRAPASLTKLMTAYVVF 78

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           + ++  +  L   + +SK A     SK +++       +  +  +I +S ND + A  E 
Sbjct: 79  QLIKDGRASLEDDVRISKKAWKTMGSKSFVEVGKTIKLKILLKGMIIQSGNDAAVALAEH 138

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           I+G+E  F   M+  A ++GM NT ++NASGL  K+Q TTA D A L     ++FP++Y 
Sbjct: 139 IAGTEGTFTAYMNQYAAELGMNNTRFENASGLDYKDQHTTASDMAKLASATIRDFPEFYP 198

Query: 211 YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           ++S ++F Y +    N NKLL   + +DG+KTG+T  + +N+V S       +++VV+G 
Sbjct: 199 WYSEKEFTYHDIKQRNRNKLLWSDNTVDGLKTGFTEKAQYNLVASANRMGMRLISVVLGS 258

Query: 271 PTSQER---DQKALELITSFLEKKTL 293
            + + R    QK L+    F E + +
Sbjct: 259 SSGESRTAQTQKVLDYGFRFFETRII 284


>gi|261392770|emb|CAX50346.1| D-alanyl-D-alanine carboxypeptidase (DD-peptidase;
           DD-carboxypeptidase; CPase; PBP5) [Neisseria
           meningitidis 8013]
 gi|325203950|gb|ADY99403.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
           M01-240355]
          Length = 389

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 144/252 (57%), Gaps = 10/252 (3%)

Query: 48  LHAKPKYSS--------IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +HA P + +        IVID+   Q    K  + P  PA+LT++MT Y++F+ ++S  +
Sbjct: 32  VHAAPTFQTPETLTAAHIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSGNI 91

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS-TAFGEFISGSEKK 157
                + + ++A     S+++++     +T++ +  +I  SAND + T  G   +GS + 
Sbjct: 92  QSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIEN 151

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A L   L ++FP+YY  FSI+ F
Sbjct: 152 FVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSF 211

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           +++N    N N LL + +N++G+K G+T + G+N+  S       I+ + +G  +++ R 
Sbjct: 212 KFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRA 271

Query: 278 QKALELITSFLE 289
               +L+   L+
Sbjct: 272 SDNSKLLNWALQ 283


>gi|225629999|ref|YP_002726790.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia sp. wRi]
 gi|225591980|gb|ACN94999.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia sp. wRi]
          Length = 368

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 74/213 (34%), Positives = 119/213 (55%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   P+S++K+MTLYI F+YL++  +H+  +  VS+ A  +  S ++LKE  + T  + 
Sbjct: 47  DEKMAPSSMSKLMTLYIAFDYLKAGIIHMEDKFRVSRKAWERKGSSMFLKEGQFVTVREL 106

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +   S ND      E I+GSE+ F   M+  A+ + + ++ + N+SG  D +   +A
Sbjct: 107 LEGITIVSGNDACITLAEGIAGSEENFVAEMNEVAQNLNLNDSHFVNSSGWPDGDHFMSA 166

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +D  +L   +  +FP+YY  FS +   Y   +  N N LL     +DG+KTGYT   G+ 
Sbjct: 167 KDLVMLAKRIFTDFPEYYDLFSEQYLTYNEIVQKNKNLLLFHDIGVDGLKTGYTNAGGYG 226

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           IV S +  D  I AVV G+ T +ER ++A  LI
Sbjct: 227 IVASAKRNDRRIFAVVNGLNTEKERIEEAKRLI 259


>gi|294788907|ref|ZP_06754147.1| serine-type D-Ala-D-Ala carboxypeptidase [Simonsiella muelleri ATCC
           29453]
 gi|294483009|gb|EFG30696.1| serine-type D-Ala-D-Ala carboxypeptidase [Simonsiella muelleri ATCC
           29453]
          Length = 411

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 133/234 (56%), Gaps = 1/234 (0%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D+  NQ+   K  D+   PASLTK+MT YI+F+ L   KL     + VS+ A     
Sbjct: 65  LVKDLQSNQILASKDIDKSIEPASLTKVMTAYIVFKNLNEGKLKPEQMLKVSEKAWKVEG 124

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S+++L+ K   +    I  LI  S ND +    E +SGSE KF  LM+ +AK++GM  T 
Sbjct: 125 SRMFLEMKKPVSVADLIKGLIVHSGNDAAITLAEGLSGSEAKFVDLMNAEAKRLGMNQTH 184

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           ++N +GL     +TT +D   L   +  +FP YYK +S+++F Y      N N LL +  
Sbjct: 185 FENTTGLPSPKHLTTVQDLMTLSDAIIHDFPDYYKIYSLKEFTYNGIKQPNRNLLLFRDP 244

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           ++DG+KTG+T ++G+N++ S +     +V++V+G  + + R  ++ +L+   L+
Sbjct: 245 SVDGMKTGHTSSAGYNLIASSKRNGRRVVSIVVGTASQEARATESSKLLNFALQ 298


>gi|262277220|ref|ZP_06055013.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium HIMB114]
 gi|262224323|gb|EEY74782.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium HIMB114]
          Length = 378

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 91/261 (34%), Positives = 144/261 (55%), Gaps = 12/261 (4%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEY 92
           I FL I + S A E  AK  Y   +IDV   ++   K  E +  PAS+TK+MT  + F+ 
Sbjct: 8   ICFLFISVKSSALETSAKQAY---LIDVLSGEVLFEKNKEQKISPASITKIMTAIVAFDL 64

Query: 93  LQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           ++   L L  +  VSK A   +++  S +++      + E  +  +I  S ND   A  E
Sbjct: 65  IKKGDLKLEEKFKVSKNAWRMSSKGFSSMFIMPNDRVSVENLLKGIIIVSGNDACIALAE 124

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            I+G+E++F  +M+N A+KIG+ NT + N+SG++D N  +T  D + + I L  NFP  Y
Sbjct: 125 GIAGTEEEFVNMMNNMAEKIGLSNTRFANSSGIYDGNNYSTVEDISKMSIYLINNFPNLY 184

Query: 210 KYFSIRKF---RYRNRIIT--NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           KY+S +KF   R     IT  N N +L K    DGIKTGY  NSG+++  +++  D  I+
Sbjct: 185 KYYSEKKFTWDRTGGAPITQGNRNPILYKDMGGDGIKTGYLNNSGYSLAATIKKNDRRIL 244

Query: 265 AVVMGMPTSQERDQKALELIT 285
           +VV G  +   R ++ + L++
Sbjct: 245 SVVSGTDSKNARSRETVRLLS 265


>gi|260774871|ref|ZP_05883772.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609126|gb|EEX35284.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 392

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 87/255 (34%), Positives = 142/255 (55%), Gaps = 8/255 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
           F + I++  A ++ AK     +++D N  ++   K+   +  PASLTKMMT Y+I + L+
Sbjct: 26  FATPIVVPDAPQIAAK---GYVLMDYNSGKILAEKEMNTKLSPASLTKMMTSYVIGQELE 82

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              + L   + +SK A  +N    SK++++  T    E+    +I +S ND   A  E I
Sbjct: 83  RGNISLQDDVTISKNAWAKNFPDSSKMFIEVGTTVKVEELNRGIIVQSGNDACVAMAEHI 142

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  F  LM+  A  +GM++T + N  GL + N  +T  D A+LG  L ++ P  Y+ 
Sbjct: 143 AGSEDAFVDLMNAWADTLGMKDTHFANVHGLDNPNLYSTPYDMALLGQALIRDVPDEYRI 202

Query: 212 FSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL +K  N+DGIKTG+T N+G+++V+S       +VAVVMG 
Sbjct: 203 YSEKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLVAVVMGT 262

Query: 271 PTSQERDQKALELIT 285
             +  R  ++ +L++
Sbjct: 263 KNANARKSESKKLLS 277


>gi|323495455|ref|ZP_08100532.1| D-alanyl-D-alanine carboxypeptidase [Vibrio brasiliensis LMG 20546]
 gi|323310378|gb|EGA63565.1| D-alanyl-D-alanine carboxypeptidase [Vibrio brasiliensis LMG 20546]
          Length = 392

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/255 (34%), Positives = 142/255 (55%), Gaps = 8/255 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
           F S I++  A ++ AK     +++D +  ++   K+   +  PASLTKMMT Y+I + L+
Sbjct: 26  FASPIVVPDAPQIAAK---GYVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELE 82

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              + L   + +SK A  +N    SK++++  T    E     +I +S ND   A  E I
Sbjct: 83  RGNISLQDDVTISKNAWAKNFPDSSKMFIEVGTTVKVEDLNRGIIIQSGNDACVAMAEHI 142

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  F  LM+  A  IGM++T + N  GL + N  +T  D A+LG  L ++ P+ Y+ 
Sbjct: 143 AGSEDAFVDLMNAWADTIGMKDTHFANVHGLDNSNLYSTPYDMALLGSALIRDVPEEYRI 202

Query: 212 FSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL +K  N+DGIKTG+T N+G+++V+S       +VAVVMG 
Sbjct: 203 YSEKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLVAVVMGT 262

Query: 271 PTSQERDQKALELIT 285
             +  R  ++ +L++
Sbjct: 263 KNANARKSESKKLLS 277


>gi|332993383|gb|AEF03438.1| D-alanyl-D-alanine carboxypeptidase [Alteromonas sp. SN2]
          Length = 394

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 75/207 (36%), Positives = 126/207 (60%), Gaps = 6/207 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT+Y+I + LQ+  + L+ ++ +S+ A  +   + SK++++  T  +    + 
Sbjct: 66  PASLTKIMTIYVIGKELQAGNISLSDEVTISENAWAKKFPDSSKMFIEVGTQVSVSDLLR 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            ++ +S ND   A  E ++GS+  FA +M+  A+ IGM ++ + NA GLHD +  TT RD
Sbjct: 126 GIVVQSGNDACVAMAEHVAGSQAAFASMMNAHAQAIGMTSSNFVNAHGLHDPDHYTTPRD 185

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A+L   L    P+ YK +S ++F +      N N LL +K  N+DGIKTG+T ++G+++
Sbjct: 186 MAVLSRALIAETPEMYKIYSEKEFTFNGIKQYNRNSLLWDKSLNVDGIKTGHTSDAGYSL 245

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQK 279
           +TS    D  +++VVMG  T  ER +K
Sbjct: 246 ITSASQGDMRLISVVMG--TDSERARK 270


>gi|83718804|ref|YP_440938.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis E264]
 gi|257140407|ref|ZP_05588669.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis E264]
 gi|83652629|gb|ABC36692.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis E264]
          Length = 436

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 137/240 (57%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D + NQ +     DE   PASLTK+MT Y++FE L +KK+ +   +  S+     
Sbjct: 81  SWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRV 140

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+ +A+++GM
Sbjct: 141 GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGM 200

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT + + +G+ D N  TTA D A L   L +++P YY  FS+++F Y N    N N+LL
Sbjct: 201 KNTHFADVNGMPDPNHYTTAGDLATLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLL 260

Query: 232 NKMHNIDGIKTGYTRNSGFNIVT----SLRYKDDP---IVAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++     SL    D    +V V+MG     +R Q +++++
Sbjct: 261 WLDPTVDGLKTGHTQAAGYCLIASAKRSLPGAADATRRLVTVMMGETKESDRVQDSMKML 320


>gi|238897881|ref|YP_002923560.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465638|gb|ACQ67412.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 384

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 87/253 (34%), Positives = 145/253 (57%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           +I +  E+ A    S I++D N  ++   K  DE R PASLTKMMT Y+I + ++S+K+ 
Sbjct: 17  LIPVPPEIKA---VSYILMDYNSGKILAEKNADEHRMPASLTKMMTSYVIGQAIKSEKIG 73

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           +N  + V K A +T NP     S ++LK     +  Q    +  +S ND   A   +++G
Sbjct: 74  VNDIVTVGKDAVSTGNPEFKGSSLMFLKPGDQVSVAQLTRGITLQSGNDACVAMANYVAG 133

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+  A+++G++NT +KN  GL  + Q T+ARD A++G  L  + P  Y  + 
Sbjct: 134 SQDSFVHLMNAYAQEMGLKNTHFKNVHGLDSEGQYTSARDMALMGRALIHDVPDEYAIYK 193

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +K  N+DGIKTG+T  +G+N+V S       +++VV+G  T
Sbjct: 194 EKEFTFNQIRQLNRNGLLWDKSLNVDGIKTGHTNAAGYNLVASATQGPMRLISVVLGGRT 253

Query: 273 SQERDQKALELIT 285
            +ER+ ++ +L++
Sbjct: 254 FKEREAESKKLLS 266


>gi|121608233|ref|YP_996040.1| Serine-type D-Ala-D-Ala carboxypeptidase [Verminephrobacter
           eiseniae EF01-2]
 gi|121552873|gb|ABM57022.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Verminephrobacter eiseniae EF01-2]
          Length = 402

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 119/205 (58%), Gaps = 4/205 (1%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           I++DV  NQ+   K  D P   ASLTK+MT Y++F+ L+++K+ L   +PVS+ A     
Sbjct: 53  ILLDVTANQVLAAKNIDAPVEQASLTKLMTAYLVFDALRAEKISLQQNLPVSERAWKMPG 112

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S++++        E  +  +I +S ND + A  E +  + + F  LM+ +AK +GMQ+T 
Sbjct: 113 SRMFIDPTMQVPVEDLLKGMIVQSGNDAAMALAEGVGATAENFVKLMNEQAKALGMQSTS 172

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT---NHNKLLN 232
           YKN  GL +   ++TARD  +L   L K+FPQ+  Y++ +++ Y     +   N N LL 
Sbjct: 173 YKNPEGLTEPGHLSTARDLGLLATRLMKDFPQHMHYYATKQYSYPGTPASNANNRNTLLY 232

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLR 257
           +   +DG+KTG+T  +G+ +V + +
Sbjct: 233 RDPTVDGLKTGHTAAAGYCLVATAK 257


>gi|206559102|ref|YP_002229862.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia cenocepacia
           J2315]
 gi|198035139|emb|CAR51013.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein
           precursor) [Burkholderia cenocepacia J2315]
          Length = 436

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 133/239 (55%), Gaps = 9/239 (3%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D   N  +     DE   PASLTK+MT Y++FE L  KK+ +   +  S      
Sbjct: 82  SWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSDAVRRV 141

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  LM+++A ++GM
Sbjct: 142 GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQFVTLMNDEAARLGM 201

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           + T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F+Y N    N N+LL
Sbjct: 202 KGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFKYNNIRQGNRNRLL 261

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI------VAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +GF ++ S +     +      V+V+MG     +R Q +++++
Sbjct: 262 WLDPTVDGLKTGHTQAAGFCLIASAKRAIPGVDGQRRLVSVMMGEQKENDRTQDSMKML 320


>gi|148981388|ref|ZP_01816384.1| D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium SWAT-3]
 gi|145960880|gb|EDK26210.1| D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium SWAT-3]
          Length = 278

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 80/213 (37%), Positives = 124/213 (58%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I + L+   ++LN  + +S+ A  +N    SK++++  T    E+   
Sbjct: 66  PASLTKMMTSYVIGQELERGNINLNDDVVISENAWAKNFPDSSKMFVEVGTTVKVEELNR 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E I+GSE  F  LM+  A  IGM++T + N  GL + N  +T  D
Sbjct: 126 GIIIQSGNDACVAMAEHIAGSEDAFVDLMNAWASSIGMKDTHFANVHGLDNPNLYSTPYD 185

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A+LG  L ++ P  Y+ +S +KF Y      N N LL +K  N+DGIKTG+T N+G+++
Sbjct: 186 MALLGQALIRDVPDEYRIYSQKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSL 245

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           V+S       +VAVVMG   +  R  ++ +L++
Sbjct: 246 VSSATEGKMRLVAVVMGTKNANARKTESKKLLS 278


>gi|90022977|ref|YP_528804.1| penicillin-binding protein 6 [Saccharophagus degradans 2-40]
 gi|89952577|gb|ABD82592.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Saccharophagus degradans 2-40]
          Length = 393

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 145/257 (56%), Gaps = 9/257 (3%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYL 93
           +F + +++    EL AK   + ++ID +  + +     DE   PASLTKMMT YI+ E +
Sbjct: 20  VFAAQVIVPAPPELSAK---AYLLIDADTGKVIVESNADEVMEPASLTKMMTSYIVSEEI 76

Query: 94  QSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           +S +L  +  + VS  A     +    S ++L  ++       +  +I +S ND S A  
Sbjct: 77  ESGRLTEDALVLVSDDAWRRGGSASGSSTMFLDPRSEVRVIDLLRGVIIQSGNDASIALA 136

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           + I+G E  FA +M+ +A+ +GM +T ++NA+G   +  +TTARD AIL   L  + P++
Sbjct: 137 QHIAGDESAFADVMNQQAQLLGMNSTNFENATGWPAEGHVTTARDLAILARALVNDHPEH 196

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           Y  +S + F+Y      N N+LL +  ++DG+KTG+T ++G+ +V S +  D  +++VV+
Sbjct: 197 YALYSEKYFKYNGINQPNRNRLLFRDDSVDGMKTGHTESAGYCLVASAKQDDMRLISVVL 256

Query: 269 GMPTSQERDQKALELIT 285
           G  +   R Q + +L++
Sbjct: 257 GTKSDSARTQDSQKLLS 273


>gi|209521266|ref|ZP_03269986.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. H160]
 gi|209498308|gb|EDZ98443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. H160]
          Length = 409

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 137/241 (56%), Gaps = 12/241 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D   NQ +     DE   PASLTK+MT Y++FE L +KK+ ++  I  S+     
Sbjct: 54  SWVLVDATSNQVLASANADERVEPASLTKLMTAYLVFEALDTKKITMDQSIEPSEAVRRV 113

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S+++++     T    +  +I +S ND + A  E + GSE +F  +M+ +A+++GM
Sbjct: 114 RNDESRMFIEALKPVTVHDLVYGMIVQSGNDAAIALAELVGGSEAQFVDMMNKEAQRLGM 173

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T + + +G+ D    TTA D AIL   L +++P YY  FS+++F Y      N N+LL
Sbjct: 174 KHTHFADVNGMPDPQHYTTAGDLAILSARLIRDYPDYYNIFSVKEFTYNKIKQPNRNRLL 233

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP--------IVAVVMGMPTSQERDQKALEL 283
                +DG+KTG+T+ +G+ ++ S + +  P        +V+V+MG     +R Q +L++
Sbjct: 234 WIDPTVDGLKTGHTQAAGYCLIASAK-RPMPGATDASRRLVSVMMGETKEHDRVQDSLKM 292

Query: 284 I 284
           +
Sbjct: 293 L 293


>gi|332970912|gb|EGK09888.1| D-alanyl-D-alanine carboxypeptidase DacA [Psychrobacter sp.
           1501(2011)]
          Length = 412

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/260 (35%), Positives = 143/260 (55%), Gaps = 9/260 (3%)

Query: 34  ILFLSIIMISMASELHAKP-----KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLY 87
           +L  SI+ +S AS     P       + I++D +   +   K  D+P  PASLTKMMT +
Sbjct: 37  LLGSSILAVSSASLAATVPPPEMDNTAYILMDYDTGAILAEKNADQPLPPASLTKMMTSH 96

Query: 88  IIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           II + L S +L  +  + +S+ A    T + S +Y+      +    +  +I +S ND S
Sbjct: 97  IIEKKLMSGELKEDEPVIMSENAWCRGTSDQSCMYVPVHKSASVIDMLRGIIIQSGNDAS 156

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  E I+GSE+ FA LM+ +AK++GM NT + NA+G+ D+N   +ARD AIL   + K 
Sbjct: 157 KAMAEHIAGSEQAFAQLMNAEAKELGMTNTNFVNATGMPDENHHASARDLAILARAIIKQ 216

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
              YYK +S ++F Y N    N N LL     +DG+KTG+T  +G+ +  S    D  ++
Sbjct: 217 GGDYYKIYSEKEFTYNNITQGNRNALLRTDPTVDGLKTGHTDAAGYCLAASSLRNDMRLI 276

Query: 265 AVVMGMPTSQERDQKALELI 284
           +V+MG  + Q R  ++ EL+
Sbjct: 277 SVIMGSKSMQARADQSRELL 296


>gi|167617731|ref|ZP_02386362.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis Bt4]
          Length = 381

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 138/241 (57%), Gaps = 12/241 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D + NQ +     DE   PASLTK+MT Y++FE L +KK+ +   +  S+     
Sbjct: 26  SWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRV 85

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+ +A+++GM
Sbjct: 86  GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGM 145

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT + + +G+ D N  TTA D A L   L +++P YY  FS+++F Y N    N N+LL
Sbjct: 146 KNTHFADVNGMPDPNHYTTAGDLATLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLL 205

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP--------IVAVVMGMPTSQERDQKALEL 283
                +DG+KTG+T+ +G+ ++ S + +  P        +V V+MG     +R Q ++++
Sbjct: 206 WLDPTVDGLKTGHTQAAGYCLIASAK-RSLPGAADATRRLVTVMMGETKESDRVQDSMKM 264

Query: 284 I 284
           +
Sbjct: 265 L 265


>gi|313668657|ref|YP_004048941.1| D-alanyl-D-alanine carboxypeptidase [Neisseria lactamica ST-640]
 gi|313006119|emb|CBN87580.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria lactamica
           020-06]
          Length = 388

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 135/235 (57%), Gaps = 2/235 (0%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           IVID+   Q    K  D P  PA+L ++MT Y++F+ L+S  +     + + ++A     
Sbjct: 48  IVIDLQSRQTLSAKNIDAPVEPAALAQLMTAYLVFKNLKSGNIRPEETLKIRESAWKSEG 107

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVS-TAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           S+++++      T+  +  +I  SAND + T  G   +GS + F   M+ +A+++GM+NT
Sbjct: 108 SRMFVRPGGSVRTDTLLKGMIVLSANDAALTLAGRLGNGSIENFVKQMNEEARRLGMKNT 167

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
           +++N +GL  + Q++TARD A+L   L ++FP+YY  FSI+ F++ N    N N LL + 
Sbjct: 168 LFRNPTGLSQERQVSTARDLALLAEALMRDFPEYYPLFSIKSFKFENIEQNNRNILLYRD 227

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           +N++G+K G+T + G+N+  S       I+ + +G  +++ R     +L+   L+
Sbjct: 228 NNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSKLLNRALQ 282


>gi|312882711|ref|ZP_07742448.1| D-alanyl-D-alanine carboxypeptidase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369672|gb|EFP97187.1| D-alanyl-D-alanine carboxypeptidase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 392

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 88/255 (34%), Positives = 141/255 (55%), Gaps = 8/255 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
           F S I++  A ++ AK     +++D +  ++   K+   +  PASLTKMMT Y+I + L 
Sbjct: 26  FASPIVVPDAPQIAAK---GYVLMDYHSGKVLAEKEMHTKLSPASLTKMMTSYVIGQELA 82

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              + L   + +SK A  +N    SK++++  T    E+    +I +S ND   A  E I
Sbjct: 83  RGNISLQDDVTISKNAWAKNFPESSKMFIEVGTSVKVEELNRGIIIQSGNDACVAMAEHI 142

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  F  LM+  A  IGM++T + N  GL + N  +T  D A+LG  L ++ P  Y+ 
Sbjct: 143 AGSEDAFVDLMNAWADTIGMKDTHFANVHGLDNPNLYSTPYDMALLGSALIRDVPDEYRI 202

Query: 212 FSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL +K  N+DGIKTG+T N+G+++V+S       +VAVVMG 
Sbjct: 203 YSEKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLVAVVMGT 262

Query: 271 PTSQERDQKALELIT 285
             +  R  ++ +L++
Sbjct: 263 KNANSRKSESKKLLS 277


>gi|313901752|ref|ZP_07835179.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467988|gb|EFR63475.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 405

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 126/224 (56%), Gaps = 9/224 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           S++++D    Q +   K DEP  PASL K+MTL ++F  L+  ++ L+ ++PVS+ A   
Sbjct: 49  SALLVDATTGQELFAQKADEPIPPASLAKIMTLDLVFHALEQGQITLDQEVPVSEAAWRL 108

Query: 111 ----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
                   PS ++L+       E  I  +   S ND ST   E ++GSE+ F   M+  A
Sbjct: 109 SVQAGLGGPSAMFLEVGERVRIEDLIRGVAIASGNDASTVLAEAVAGSEEAFVQRMNQHA 168

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII-T 225
            ++GM+++++ N+ GL    Q  TARD A L + + K  P   KY S++ F +++     
Sbjct: 169 AELGMKDSVFSNSHGLPGGEQHVTARDMARLALHVLKEHPGILKYTSMKYFEWKDFAAQP 228

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           N+N+LL +   +DG+KTG+   +G+++V + R  D  +V+VVMG
Sbjct: 229 NYNRLLFRDPRVDGLKTGHLSEAGYHLVATAREGDRRLVSVVMG 272


>gi|261400191|ref|ZP_05986316.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria lactamica ATCC
           23970]
 gi|269210194|gb|EEZ76649.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria lactamica ATCC
           23970]
          Length = 388

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 135/235 (57%), Gaps = 2/235 (0%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +VID+   Q    K  D P  PA+L ++MT Y++F+ L+S  +     + + ++A     
Sbjct: 48  VVIDLQSRQTLSAKNIDAPAEPAALAQLMTAYLVFKNLKSGNIRPEETLKIRESAWKSEG 107

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVS-TAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           S+++++      T+  +  +I  SAND + T  G   +GS + F   M+ +A+++GM+NT
Sbjct: 108 SRMFVRPGGSVRTDTLLKGMIVLSANDAALTLAGRLGNGSIENFVKQMNEEARRLGMKNT 167

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
           +++N +GL  + Q++TARD A+L   L ++FP+YY  FSI+ F++ N    N N LL + 
Sbjct: 168 LFRNPTGLSQERQVSTARDLALLAEALMRDFPEYYPLFSIKSFKFENIEQNNRNILLYRD 227

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           +N++G+K G+T + G+N+  S       I+ + +G  +++ R     +L+   L+
Sbjct: 228 NNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSKLLNRALQ 282


>gi|325130023|gb|EGC52816.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
           OX99.30304]
          Length = 389

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 144/252 (57%), Gaps = 10/252 (3%)

Query: 48  LHAKPKYSS--------IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +HA P   +        IVID+   Q+   K  + P  PA+LT++MT Y++F+ ++S  +
Sbjct: 32  VHAAPTLQTPETLTAAHIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGNI 91

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS-TAFGEFISGSEKK 157
                + + ++A     S+++++     +T++ +  +I  SAND + T  G   +GS + 
Sbjct: 92  RSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIEN 151

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A L   L ++FP+YY  FSI+ F
Sbjct: 152 FVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSF 211

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           +++N    N N LL + +N++G+K G+T + G+N+  S       I+ + +G  +++ R 
Sbjct: 212 KFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRA 271

Query: 278 QKALELITSFLE 289
               +L+   L+
Sbjct: 272 SDNSKLLNWALQ 283


>gi|146277284|ref|YP_001167443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145555525|gb|ABP70138.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 389

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 132/237 (55%), Gaps = 12/237 (5%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           EP  PAS++K+MTL ++FE L+  ++ +NT   VS  A     SK++++E+   T E  I
Sbjct: 48  EPLPPASMSKLMTLNMLFEALRDGRVTMNTTFAVSTKAKQMGGSKMFVEERDRPTVEDLI 107

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             ++  S ND      E ++G+E  F+  M+ +AK +GM ++ + N+SG  +     +  
Sbjct: 108 HGIVVNSGNDACVVVAEGLNGTESDFSRAMNVRAKALGMNDSTFTNSSGWPEPGHRMSVH 167

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT---NHNKLL----NKMHNIDGIKTGYT 245
           D  IL + L + FP+YY YF+  +F Y++R+ +   N N LL    +     DG+KTG+T
Sbjct: 168 DLGILAVRLIEEFPEYYPYFAHTEFNYKDRVPSNANNRNPLLRLGPDGDWTADGLKTGHT 227

Query: 246 RNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELIT----SFLEKKTLKHQQ 297
           + +G+ +V S   KD   IV V+ G+ T  +R Q+  +++      F++K  +K  Q
Sbjct: 228 QEAGYGLVGSAVQKDGRRIVFVLTGLATEADRAQEGEQIVNWAFRQFVQKTLVKKGQ 284


>gi|254247085|ref|ZP_04940406.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia
           PC184]
 gi|124871861|gb|EAY63577.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia
           PC184]
          Length = 436

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 133/239 (55%), Gaps = 9/239 (3%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D   N  +     DE   PASLTK+MT Y++FE L  KK+ +   +  S      
Sbjct: 82  SWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSDAVRRV 141

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+++A ++GM
Sbjct: 142 GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQFVTMMNDEAGRLGM 201

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           + T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F+Y N    N N+LL
Sbjct: 202 KGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYSIFSEKEFKYNNIRQGNRNRLL 261

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI------VAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++ S +     +      V+V+MG     ER Q +++++
Sbjct: 262 WLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEQKESERTQDSMKML 320


>gi|76808683|ref|YP_332034.1| penicillin-binding protein 6 [Burkholderia pseudomallei 1710b]
 gi|134279982|ref|ZP_01766694.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei 305]
 gi|167822505|ref|ZP_02453976.1| penicillin-binding protein 6 [Burkholderia pseudomallei 9]
 gi|217420171|ref|ZP_03451677.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           576]
 gi|226193704|ref|ZP_03789307.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           Pakistan 9]
 gi|254258059|ref|ZP_04949113.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           1710a]
 gi|76578136|gb|ABA47611.1| penicillin-binding protein 6 [Burkholderia pseudomallei 1710b]
 gi|134249182|gb|EBA49264.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei 305]
 gi|217397475|gb|EEC37491.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           576]
 gi|225934282|gb|EEH30266.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           Pakistan 9]
 gi|254216748|gb|EET06132.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           1710a]
          Length = 437

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 137/240 (57%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D + NQ +     DE   PASLTK+MT Y++FE L +KK+ +   +  S+     
Sbjct: 82  SWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRV 141

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+ +A+++GM
Sbjct: 142 GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGM 201

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT + + +G+ D N  TTA D A L   L +++P YY  FS+++F Y N    N N+LL
Sbjct: 202 KNTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLL 261

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTS----LRYKDDP---IVAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++ S    L    D    +V V+MG     +R Q +++++
Sbjct: 262 WLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKML 321


>gi|116690911|ref|YP_836534.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia
           HI2424]
 gi|170734237|ref|YP_001766184.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia
           MC0-3]
 gi|116649000|gb|ABK09641.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Burkholderia cenocepacia HI2424]
 gi|169817479|gb|ACA92062.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia
           MC0-3]
          Length = 436

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 133/239 (55%), Gaps = 9/239 (3%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D   N  +     DE   PASLTK+MT Y++FE L  KK+ +   +  S      
Sbjct: 82  SWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSDAVRRV 141

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+++A ++GM
Sbjct: 142 GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQFVTMMNDEAGRLGM 201

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           + T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F+Y N    N N+LL
Sbjct: 202 KGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYSIFSEKEFKYNNIRQGNRNRLL 261

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI------VAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++ S +     +      V+V+MG     ER Q +++++
Sbjct: 262 WLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEQKESERTQDSMKML 320


>gi|116751475|ref|YP_848162.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
           [Syntrophobacter fumaroxidans MPOB]
 gi|116700539|gb|ABK19727.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Syntrophobacter fumaroxidans MPOB]
          Length = 462

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 86/262 (32%), Positives = 148/262 (56%), Gaps = 9/262 (3%)

Query: 35  LFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYI 88
           L L++ ++S+ S L A P      S++V+D++ N +  +++  D+   PAS+TK++TLYI
Sbjct: 12  LALALSVVSVQSVLAA-PFTVNARSAMVVDMS-NGVVLYEKNADDLIAPASITKVLTLYI 69

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           +F+ ++  ++ L+ ++ +S  AA    S++ +K  T  + E+ I  +   S ND   A  
Sbjct: 70  VFDAIREGRIRLDDRVEISSRAAKTTGSRMGVKAGTRVSLEELIKGMAVVSGNDACVAVA 129

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E ISG+ + F   M+ KA+++GM ++ +   +GL  K Q+TTARD A L I   + FP  
Sbjct: 130 EHISGNVEAFVRKMNAKARELGMNSSRFMTPNGLPAKGQLTTARDIARLSIAYLRRFPDS 189

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
               S++ + Y      N N+LL     +DG+KTG+   SG+NI  + R  +  I+AVV+
Sbjct: 190 LTIHSMQAYSYGTSSHHNANRLLATCPGVDGLKTGFVCASGYNITATARRGNTRILAVVL 249

Query: 269 GMPTSQERDQKALELI-TSFLE 289
           G PT   R ++  +L+   F E
Sbjct: 250 GAPTPGVRLRETTKLLEAGFAE 271


>gi|218708731|ref|YP_002416352.1| putative Penicillin-binding protein [Vibrio splendidus LGP32]
 gi|218321750|emb|CAV17705.1| putative Penicillin-binding protein [Vibrio splendidus LGP32]
          Length = 393

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 79/213 (37%), Positives = 124/213 (58%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y++ + L+   ++LN  + +S+ A  +N    SK++++  T    E+   
Sbjct: 66  PASLTKMMTSYVVGQELERGNINLNDDVVISENAWAKNFPDSSKMFIEVGTTVKVEELNR 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E I+GSE  F  LM+  A  IGM++T + N  GL + N  +T  D
Sbjct: 126 GIIIQSGNDACVAMAEHIAGSEDAFVDLMNAWASSIGMKDTHFANVHGLDNPNLYSTPYD 185

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A+LG  L ++ P  Y+ +S +KF Y      N N LL +K  N+DGIKTG+T N+G+++
Sbjct: 186 MALLGQALIRDVPDEYRIYSQKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSL 245

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           V+S       +VAVVMG   +  R  ++ +L++
Sbjct: 246 VSSATEGKMRLVAVVMGTKNANARKTESKKLLS 278


>gi|254281581|ref|ZP_04956549.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [gamma proteobacterium NOR51-B]
 gi|219677784|gb|EED34133.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [gamma proteobacterium NOR51-B]
          Length = 381

 Score =  139 bits (349), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 124/218 (56%), Gaps = 5/218 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYF 126
           D+   PASLTKMMT YI+ E + + +L L+ ++PVS+TA +QNP     S ++++     
Sbjct: 48  DDVLPPASLTKMMTAYILAEEIDAGRLSLSDEVPVSRTAWSQNPTFRGSSLMWIEPGKTV 107

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           T  +    ++  S ND + A  E I+GSE+ FA +M+  A+ +GM  T Y N+ GL +  
Sbjct: 108 TVGELEKGIVISSGNDATVAIAEHIAGSEEAFAGMMNRYAEILGMTATHYVNSHGLPNSA 167

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
            +T+ARD A L   + ++ P+ YK +    F Y +    N N LL    ++DG+KTGYT 
Sbjct: 168 HVTSARDLATLAAAIIRDHPERYKVYKQLSFTYNDITQYNRNHLLRDDPSVDGLKTGYTS 227

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +G+ +V S       +++VVMG  +++ R  +   L+
Sbjct: 228 VAGYGLVASAERDGMRLISVVMGSNSTRSRKAETRSLL 265


>gi|292487601|ref|YP_003530473.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Erwinia amylovora
           CFBP1430]
 gi|291553020|emb|CBA20065.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Erwinia amylovora
           CFBP1430]
          Length = 411

 Score =  139 bits (349), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 88/272 (32%), Positives = 154/272 (56%), Gaps = 18/272 (6%)

Query: 32  GKILFLSIIMISMASELHAK------PKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLT 81
           G ++ LS+ +++ A +++ K      P+  +   I+ID N  ++   K  D  R PASLT
Sbjct: 23  GMLIALSLNVVAYADDVNIKTMIPGVPEIDAEAYILIDYNSGKVLAEKNADARRDPASLT 82

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILAL 135
           KMMT Y+I + +++ K+H + ++ V K A AT NP     S ++LK        Q    +
Sbjct: 83  KMMTSYVIGQAIKAGKIHQDDRVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVSQLTRGI 142

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + +S ND   A  ++++GS+  F  LM+N  K +G+QNT ++   GL  + Q ++ARD A
Sbjct: 143 VLQSGNDACVAMADYVAGSQDTFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYSSARDMA 202

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVT 254
           ++G  L ++ P  Y  +  ++F + N    N N LL   + N+DGIKTG+T ++G+N+V 
Sbjct: 203 LIGRALIRDVPDEYAVYHEKEFTFNNIRQMNRNGLLWDTNLNVDGIKTGHTESAGYNLVA 262

Query: 255 SL-RYKDDPIVAVVMGMPTSQERDQKALELIT 285
           S    +   +++ VMG  T + R+ ++ +L+T
Sbjct: 263 SATEGQQMRLISTVMGGHTYKGRETESKKLLT 294


>gi|239906564|ref|YP_002953305.1| putative D-alanyl-D-alanine carboxypeptidase [Desulfovibrio
           magneticus RS-1]
 gi|239796430|dbj|BAH75419.1| putative D-alanyl-D-alanine carboxypeptidase [Desulfovibrio
           magneticus RS-1]
          Length = 364

 Score =  139 bits (349), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 74/213 (34%), Positives = 116/213 (54%), Gaps = 1/213 (0%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D P  PASLTK+MT+Y++F+ + S K     +I VS+ A     S + L+     T ++ 
Sbjct: 56  DRPIPPASLTKVMTMYVVFDLVASGKASFADRIKVSRGADRTGGSTMGLRAGEIVTLDEL 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +   S ND   A  E   G    F  LM+ KA+++GM  T +KN +GL    Q TTA
Sbjct: 116 MRGMAVASGNDACIAVAEHFGGVPT-FVGLMNRKARELGMTGTTFKNPNGLPAAGQYTTA 174

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           RD   L +   +++PQ  +Y S  +  +   +  N N+LL      DGIKTGY   SG+N
Sbjct: 175 RDLTKLAVSYLRHYPQALRYHSTTEINHNGAVHGNTNRLLASYDGADGIKTGYVDASGYN 234

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           I+ + +  D  ++AVV+G  T Q R+++A+ ++
Sbjct: 235 IIATAKRGDTRVIAVVLGGRTKQVRNREAVRIL 267


>gi|300313593|ref|YP_003777685.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding)
           transmembrane protein [Herbaspirillum seropedicae SmR1]
 gi|300076378|gb|ADJ65777.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding)
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 384

 Score =  139 bits (349), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 88/260 (33%), Positives = 153/260 (58%), Gaps = 13/260 (5%)

Query: 37  LSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEY 92
           LSI  ++ +++    P  ++   +++D + NQ+      + R  PASLTK+MT Y+ F  
Sbjct: 13  LSISTLTASAQSLPPPTVAAKSWLLLDASANQVIASSDPDTRVEPASLTKLMTAYLAFAA 72

Query: 93  LQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           L+ K+L L  ++ VS  A   +PS  K++++     + +  +  LI+ S ND + A  E 
Sbjct: 73  LRDKRLSLEQEVSVSVNAWKVDPSSSKMFIEPNKPVSIDNLLYGLISVSGNDAAVAVAEA 132

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           +SG+E  F  LM+ +A++ G+ NT + N  GL   +  TTARD +IL   L  +FP+YYK
Sbjct: 133 VSGTEDAFVQLMNREAQRQGLTNTHFSNPHGLPSPDTYTTARDLSILCRNLINDFPEYYK 192

Query: 211 -YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP-----IV 264
            Y+S++KF Y N    N N+LL     +DG+KTG+T ++G++++TS  ++  P     ++
Sbjct: 193 RYYSVKKFTYNNITQPNRNRLLWLDPTVDGMKTGHTSSAGYSLITS-AHRPVPNGERRLI 251

Query: 265 AVVMGMPTSQERDQKALELI 284
           +VV+G  + Q R Q++ +L+
Sbjct: 252 SVVIGTVSDQVRTQESQKLL 271


>gi|292898840|ref|YP_003538209.1| penicillin-binding protein 5 [Erwinia amylovora ATCC 49946]
 gi|291198688|emb|CBJ45797.1| penicillin-binding protein 5 [Erwinia amylovora ATCC 49946]
          Length = 404

 Score =  139 bits (349), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 88/272 (32%), Positives = 154/272 (56%), Gaps = 18/272 (6%)

Query: 32  GKILFLSIIMISMASELHAK------PKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLT 81
           G ++ LS+ +++ A +++ K      P+  +   I+ID N  ++   K  D  R PASLT
Sbjct: 16  GMLIALSLNVVAYADDVNIKTMIPGVPEIDAEAYILIDYNSGKVLAEKNADARRDPASLT 75

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILAL 135
           KMMT Y+I + +++ K+H + ++ V K A AT NP     S ++LK        Q    +
Sbjct: 76  KMMTSYVIGQAIKAGKIHQDDRVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVSQLTRGI 135

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + +S ND   A  ++++GS+  F  LM+N  K +G+QNT ++   GL  + Q ++ARD A
Sbjct: 136 VLQSGNDACVAMADYVAGSQDTFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYSSARDMA 195

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVT 254
           ++G  L ++ P  Y  +  ++F + N    N N LL   + N+DGIKTG+T ++G+N+V 
Sbjct: 196 LIGRALIRDVPDEYAVYHEKEFTFNNIRQMNRNGLLWDTNLNVDGIKTGHTESAGYNLVA 255

Query: 255 SL-RYKDDPIVAVVMGMPTSQERDQKALELIT 285
           S    +   +++ VMG  T + R+ ++ +L+T
Sbjct: 256 SATEGQQMRLISTVMGGHTYKGRETESKKLLT 287


>gi|107023825|ref|YP_622152.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia
           AU 1054]
 gi|105894014|gb|ABF77179.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Burkholderia cenocepacia AU 1054]
          Length = 529

 Score =  138 bits (348), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 133/239 (55%), Gaps = 9/239 (3%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D   N  +     DE   PASLTK+MT Y++FE L  KK+ +   +  S      
Sbjct: 175 SWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSDAVRRV 234

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+++A ++GM
Sbjct: 235 GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQFVTMMNDEAGRLGM 294

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           + T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F+Y N    N N+LL
Sbjct: 295 KGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYSIFSEKEFKYNNIRQGNRNRLL 354

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI------VAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++ S +     +      V+V+MG     ER Q +++++
Sbjct: 355 WLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEQKESERTQDSMKML 413


>gi|304387808|ref|ZP_07369982.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Neisseria
           meningitidis ATCC 13091]
 gi|304338073|gb|EFM04209.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Neisseria
           meningitidis ATCC 13091]
          Length = 389

 Score =  138 bits (348), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 139/235 (59%), Gaps = 2/235 (0%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           IVID+   Q    K  + P  PA+LT++MT Y++F+ ++S  +     + + ++A     
Sbjct: 49  IVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASEG 108

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVS-TAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           S+++++     +T++ +  +I  SAND + T  G   +GS + F   M+ +A+++GM+NT
Sbjct: 109 SRMFVRPCDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNT 168

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
           ++KN +GL  + Q++TA+D A+L   L ++FP+YY  FSI+ F+++N    N N LL + 
Sbjct: 169 VFKNPTGLSREGQVSTAKDLALLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRD 228

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           +N++G+K G+T + G+N+  S       I+ + +G  +++ R     +L+   L+
Sbjct: 229 NNVNGLKAGHTESGGYNLAVSYTGNGRHILVITLGSESAEIRASDNSKLLNWALQ 283


>gi|254196217|ref|ZP_04902641.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei S13]
 gi|169652960|gb|EDS85653.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei S13]
          Length = 437

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 137/240 (57%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D + NQ +     DE   PASLTK+MT Y++FE L +KK+ +   +  S+     
Sbjct: 82  SWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRV 141

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+ +A+++GM
Sbjct: 142 GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGM 201

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT + + +G+ D N  TTA D A L   L +++P YY  FS+++F Y N    N N+LL
Sbjct: 202 KNTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLL 261

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTS----LRYKDDP---IVAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++ S    L    D    +V V+MG     +R Q +++++
Sbjct: 262 WLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKML 321


>gi|170728041|ref|YP_001762067.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella woodyi ATCC
           51908]
 gi|169813388|gb|ACA87972.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella woodyi ATCC
           51908]
          Length = 390

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/268 (33%), Positives = 146/268 (54%), Gaps = 10/268 (3%)

Query: 14  FLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD- 72
           FL  P  S+ +  +  L    +F + ++   A  + AK   + +++D N  Q+   +   
Sbjct: 3   FLNRPLKSLILATS--LASSFVFAAPVVTPNAPTVAAK---AFVLMDYNTGQVIAEENAY 57

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTE 129
           E   PASLTKMMT Y+I   ++   +  N Q+ +SK A ++N    SK++++     T +
Sbjct: 58  ESLNPASLTKMMTSYVIGHEIKVGNISPNDQVTISKKAWSKNFPDSSKMFIEVGKQVTVD 117

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
                +I +S ND   A  E I+G+E  F  LM++ AK++GMQ++ ++N+ GL  +N  T
Sbjct: 118 DLNHGIIIQSGNDACVAMAEHIAGTEDGFVDLMNSWAKQLGMQDSYFENSHGLDSENHKT 177

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNS 248
           TA D AILG  L ++ P+ Y  +  + F Y      N N LL +K  ++DGIKTG+T  +
Sbjct: 178 TAYDMAILGAALIRDVPEEYVLYKKKSFTYNGIKQYNRNGLLWDKSMHVDGIKTGHTSGA 237

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           G+N+VTS       +VAVVMG  +   R
Sbjct: 238 GYNLVTSATKDGMRLVAVVMGTKSEAAR 265


>gi|220903565|ref|YP_002478877.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219867864|gb|ACL48199.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 378

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 131/237 (55%), Gaps = 3/237 (1%)

Query: 55  SSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S+I+ D++ + +  F+Q  D+   PASLTK++++++  + +   KL L+  + VS+ AA 
Sbjct: 50  SAILYDLDHDAIL-FEQNADQRIAPASLTKVLSMFLALDSVDQGKLSLDNTVTVSRAAAG 108

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S++ L+E    + EQ ++ +   S ND S A  E + GS   F  +M+ KA+ +GM+
Sbjct: 109 TGGSRMGLRENDVVSLEQLLMGMAVSSGNDASMAVAECVGGSTPAFVAMMNAKAQALGMR 168

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           ++ ++N  GL  K Q TTARD   L     +  PQ  ++ +     ++ R+  N N LL 
Sbjct: 169 DSQFRNPHGLPAKGQYTTARDMLTLARAYLQAHPQALRFHNTHTISHKGRVTWNKNPLLG 228

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           +    DG+KTG+   SG+N++ +       ++AV++G P S+ R  +A  L+ +  +
Sbjct: 229 QYPGADGLKTGWVNASGYNLIFTASQGPRRLLAVILGAPDSRTRGVEAFRLLDAGFQ 285


>gi|167736880|ref|ZP_02409654.1| penicillin-binding protein 6 [Burkholderia pseudomallei 14]
          Length = 376

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 137/240 (57%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D + NQ +     DE   PASLTK+MT Y++FE L +KK+ +   +  S+     
Sbjct: 21  SWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRV 80

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+ +A+++GM
Sbjct: 81  GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGM 140

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT + + +G+ D N  TTA D A L   L +++P YY  FS+++F Y N    N N+LL
Sbjct: 141 KNTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLL 200

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTS----LRYKDDP---IVAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++ S    L    D    +V V+MG     +R Q +++++
Sbjct: 201 WLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKML 260


>gi|254804742|ref|YP_003082963.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria
           meningitidis alpha14]
 gi|254668284|emb|CBA05194.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria
           meningitidis alpha14]
          Length = 389

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 143/252 (56%), Gaps = 10/252 (3%)

Query: 48  LHAKPKYSS--------IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +HA P   +        IVID+   Q    K  + P  PA+LT++MT Y++F+ ++S  +
Sbjct: 32  VHAAPTLQTPETLTAAHIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSGNI 91

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS-TAFGEFISGSEKK 157
                + + ++A     S+++++      T++ +  +I  SAND + T  G   +GS + 
Sbjct: 92  QSEENLKIPESAWASEGSRMFVRPGDTVGTDKLLKGMIALSANDAALTLAGRLGNGSIEN 151

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A+L   L ++FP+YY  FSI+ F
Sbjct: 152 FVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLALLSEALMRDFPEYYPLFSIKSF 211

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           +++N    N N LL + +N++G+K G+T + G+N+  S       I+ + +G  +++ R 
Sbjct: 212 KFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYTGNGRHILVITLGSESAEIRA 271

Query: 278 QKALELITSFLE 289
               +L+   L+
Sbjct: 272 SDNSKLLNWALQ 283


>gi|294671129|ref|ZP_06735984.1| hypothetical protein NEIELOOT_02837 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307237|gb|EFE48480.1| hypothetical protein NEIELOOT_02837 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 430

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/214 (35%), Positives = 122/214 (57%), Gaps = 4/214 (1%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           S A E+ A    + +V D+   Q +TG   D+   PASLTK+MT Y+ F+ L+  +L   
Sbjct: 72  STAPEIAAA---AYLVQDLQSGQILTGKNLDKQIEPASLTKLMTAYLAFKALEEGRLKAE 128

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
           T +  S+TA     S+++L           +  LI +S ND +    E + GSE  FA +
Sbjct: 129 TMLTPSETAWRAEGSRMFLNAGKPVAVGDLLKGLIVQSGNDAAVTLAEALGGSEVGFADM 188

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           M+ +AK++GM  T + NA+GL     ++T RD AIL   + K++P+YY  +S++ F+Y N
Sbjct: 189 MNAEAKRLGMSKTHFVNATGLPSDGHMSTVRDLAILSAAIIKDYPKYYPIYSMQSFKYNN 248

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
               N N LL +  N+DG+KTG+T  +G+N++ S
Sbjct: 249 IEQPNRNLLLYRDPNVDGLKTGHTNTAGYNLIAS 282


>gi|53718048|ref|YP_107034.1| penicillin-binding protein 6 [Burkholderia pseudomallei K96243]
 gi|52208462|emb|CAH34396.1| penicillin-binding protein 6 [Burkholderia pseudomallei K96243]
          Length = 403

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 137/240 (57%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D + NQ +     DE   PASLTK+MT Y++FE L +KK+ +   +  S+     
Sbjct: 48  SWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRV 107

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+ +A+++GM
Sbjct: 108 GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGM 167

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT + + +G+ D N  TTA D A L   L +++P YY  FS+++F Y N    N N+LL
Sbjct: 168 KNTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLL 227

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTS----LRYKDDP---IVAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++ S    L    D    +V V+MG     +R Q +++++
Sbjct: 228 WLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKML 287


>gi|239996931|ref|ZP_04717455.1| D-alanyl-D-alanine carboxypeptidase [Alteromonas macleodii ATCC
           27126]
          Length = 394

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/207 (36%), Positives = 122/207 (58%), Gaps = 6/207 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT+Y+I + LQ+  + L+ ++ +S+ A  +   + SK++++  T  +    + 
Sbjct: 66  PASLTKIMTIYVIGKELQAGNISLDDEVTISENAWAKKFPDSSKMFIEVGTQVSVRDLLR 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            ++ +S ND   A  E ++GSE  FA +M+     +GM  + + NA GLHD +  TT RD
Sbjct: 126 GIVVQSGNDACVAMAEHVAGSESAFASMMNAHTASLGMSGSHWVNAHGLHDPDHYTTPRD 185

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            AIL   L    P+ YK +S ++F Y      N N LL +K  N+DGIKTG+T ++G+++
Sbjct: 186 MAILSRALIAETPEMYKIYSEKEFTYNGIKQYNRNSLLWDKSLNVDGIKTGHTSDAGYSL 245

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQK 279
           +TS       +++VVMG  T  ER +K
Sbjct: 246 ITSAEQGGMRLISVVMG--TDSERARK 270


>gi|299068147|emb|CBJ39364.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
           [Ralstonia solanacearum CMR15]
          Length = 397

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 141/240 (58%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           + ++ DV   Q + G   DE   PASLTK+MT Y+    ++  KL  +  +  ++T  + 
Sbjct: 43  AWMLTDVTSGQVLGGGNMDERIEPASLTKLMTAYLAVAAVRDGKLKYDQMLTPTETVRSV 102

Query: 113 -QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S+++L+     +    +  LI +S ND +    E + G+E  F +LM+ +A+++GM
Sbjct: 103 KTDESRMFLQPGKPVSVRDLLQGLIVQSGNDAALVLAEAVGGTETNFVMLMNREAERLGM 162

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           + T + NA+GL D N  TTARD +IL   L ++FP+ YK++S ++F Y N    N N+LL
Sbjct: 163 KGTHFMNAAGLPDPNHYTTARDLSILTSALIRDFPEDYKFYSQKEFTYNNIKQPNRNRLL 222

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLR--YKDDP-----IVAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+++G+ ++TS +    D P     +++V++G  + Q R Q++L+++
Sbjct: 223 WIDPTVDGVKTGHTKSAGYCLITSAKRPLPDVPNASRRLLSVMIGTKSEQVRTQESLKVL 282


>gi|325142125|gb|EGC64550.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
           961-5945]
 gi|325198078|gb|ADY93534.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
           G2136]
          Length = 389

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 143/252 (56%), Gaps = 10/252 (3%)

Query: 48  LHAKPKYSS--------IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +HA P   +        IVID+   Q    K  + P  PA+LT++MT Y++F+ ++S  +
Sbjct: 32  VHAAPTLQTPETLTAAHIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSGNI 91

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS-TAFGEFISGSEKK 157
                + + ++A     S+++++     +T++ +  +I  SAND + T  G   +GS + 
Sbjct: 92  QSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIEN 151

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A L   L ++FP+YY  FSI+ F
Sbjct: 152 FVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSF 211

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           +++N    N N LL + +N++G+K G+T + G+N+  S       I+ + +G  +++ R 
Sbjct: 212 KFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRA 271

Query: 278 QKALELITSFLE 289
               +L+   L+
Sbjct: 272 SDNSKLLNWALQ 283


>gi|303325746|ref|ZP_07356189.1| D-alanyl-D-alanine carboxypeptidase family protein [Desulfovibrio
           sp. 3_1_syn3]
 gi|302863662|gb|EFL86593.1| D-alanyl-D-alanine carboxypeptidase family protein [Desulfovibrio
           sp. 3_1_syn3]
          Length = 375

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 132/237 (55%), Gaps = 3/237 (1%)

Query: 55  SSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S+I+ D++ + +  F+Q  DE   PASLTK++++++  +++ +     ++ +PVS+ AA 
Sbjct: 51  SAILYDLDNDAIL-FEQNADEHIPPASLTKVLSMFLALDHISAGHAAFDSVVPVSRAAAR 109

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S++ L+ +     E+ ++ +   S ND S A  EF+ GS   F  +M+ KA+ +GM+
Sbjct: 110 TGGSRMGLRNREQVPLEELLMGMAVSSGNDASMAVAEFVGGSAPAFVNMMNVKARTLGMR 169

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           ++ ++N  GL  + Q TTARD   L     + +P   K+ +     ++ R+  N N LL 
Sbjct: 170 DSRFRNPHGLPAQGQYTTARDMLTLARAYLRAYPWALKFHNTHVLNHQGRVTWNKNPLLG 229

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           +    DG+KTG+   SG+N++ +    D  ++AV++G P  + R  +A  L+ +  +
Sbjct: 230 QYPGADGLKTGWVNASGYNLIFTASRGDKRLLAVILGAPDVRVRGTEACRLLDAGFQ 286


>gi|332527505|ref|ZP_08403557.1| serine-type D-Ala-D-Ala carboxypeptidase [Rubrivivax
           benzoatilyticus JA2]
 gi|332111912|gb|EGJ11890.1| serine-type D-Ala-D-Ala carboxypeptidase [Rubrivivax
           benzoatilyticus JA2]
          Length = 381

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 149/265 (56%), Gaps = 17/265 (6%)

Query: 36  FLSIIMISMASELHAK----PKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLY 87
            LS+ +    +  HA+    P+ ++   I+IDV+ NQ+   +  D P  PASLTK+M+ Y
Sbjct: 4   LLSLALAFFVAGAHAQAPVPPEVAARQYILIDVSANQVLAERDADTPADPASLTKLMSAY 63

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           ++F  ++  KL L+ ++PVS  A  +     S +++  +     ++ +  +I +S ND +
Sbjct: 64  LVFNAVRDGKLALDQRVPVSTRAWDERKYGGSLMFIDTRMQPRVDELLRGMIVQSGNDAT 123

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  E + G+ + F  +M+ +A+  G++NT ++N SGL +    TT R+ A +   + ++
Sbjct: 124 VALAEAVGGTVENFVAMMNKQAQAWGLKNTQFRNPSGLTEAGHKTTPREIAYIATRIIQD 183

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP-- 262
            PQ+Y  +S R F + N    N N LL +  ++DG+KTGYT  +G+ +V S + +D P  
Sbjct: 184 HPQFYPIYSERAFAFNNIRQDNRNLLLGRDPSVDGMKTGYTEAAGYCLVASAQ-RDMPNG 242

Query: 263 ---IVAVVMGMPTSQERDQKALELI 284
              +++VVMG  + Q R  ++ +L+
Sbjct: 243 KRRLLSVVMGTASMQARANESQKLL 267


>gi|323499952|ref|ZP_08104910.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sinaloensis DSM 21326]
 gi|323314969|gb|EGA68022.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sinaloensis DSM 21326]
          Length = 392

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/213 (37%), Positives = 122/213 (57%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I + L+   + L   + +SK A  +N    SK++++  T    E    
Sbjct: 65  PASLTKMMTSYVIGQELERGNISLQDDVTISKNAWAKNFPDSSKMFIEVGTTVKVEDLNR 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E I+GSE  F  LM+  A  IGM++T + N  GL + N  +T  D
Sbjct: 125 GIIIQSGNDACVAMAEHIAGSEDAFVDLMNAWANTIGMKDTHFANVHGLDNPNLYSTPYD 184

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A+LG  L ++ P  Y+ +S +KF Y      N N LL +K  N+DGIKTG+T N+G+++
Sbjct: 185 MALLGSALIRDVPDEYRIYSDKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSL 244

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           V+S       +VAVVMG  ++  R  ++ +L++
Sbjct: 245 VSSATEGKMRLVAVVMGTKSANARKSESKKLLS 277


>gi|262274734|ref|ZP_06052545.1| D-alanyl-D-alanine carboxypeptidase [Grimontia hollisae CIP 101886]
 gi|262221297|gb|EEY72611.1| D-alanyl-D-alanine carboxypeptidase [Grimontia hollisae CIP 101886]
          Length = 347

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/212 (36%), Positives = 122/212 (57%), Gaps = 4/212 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I + ++   + L+  + +SK A  +N    SK++++  T    E    
Sbjct: 20  PASLTKMMTSYVIGQEIERGNISLDDDVVISKNAWAKNFPGSSKMFIEVGTTVKVEDLNR 79

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E I+GSE  F  LM+  AK +GM NT + N+ GL D    +T  D
Sbjct: 80  GIIIQSGNDACVAMAEHIAGSEDSFVDLMNGWAKTLGMNNTKFSNSHGLDDDGLYSTPYD 139

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A+LG  L ++ P+ Y+ ++ + F Y      N N LL +K  N+DGIKTG+T  +G+++
Sbjct: 140 MALLGQALIRDVPEEYRIYNEKSFTYNGITQYNRNGLLWDKSMNVDGIKTGHTEKAGYSL 199

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           V+S    D  ++AVVMG  ++  R  ++ +L+
Sbjct: 200 VSSATEGDMRLIAVVMGTESANARKAESKKLL 231


>gi|167901088|ref|ZP_02488293.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 371

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 137/240 (57%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D + NQ +     DE   PASLTK+MT Y++FE L +KK+ +   +  S+     
Sbjct: 16  SWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRV 75

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+ +A+++GM
Sbjct: 76  GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGM 135

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT + + +G+ D N  TTA D A L   L +++P YY  FS+++F Y N    N N+LL
Sbjct: 136 KNTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLL 195

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTS----LRYKDDP---IVAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++ S    L    D    +V V+MG     +R Q +++++
Sbjct: 196 WLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKML 255


>gi|308389049|gb|ADO31369.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria
           meningitidis alpha710]
          Length = 389

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 138/235 (58%), Gaps = 2/235 (0%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           IVID+   Q    K  + P  PA+LT++MT Y++F+ ++S  +     + + ++A     
Sbjct: 49  IVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASEG 108

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVS-TAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           S+++++     +T++ +  +I  SAND + T  G   +GS + F   M+ +A+++GM+NT
Sbjct: 109 SRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNT 168

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
           ++KN +GL  + Q++TA+D A L   L ++FP+YY  FSI+ F+++N    N N LL + 
Sbjct: 169 VFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRD 228

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           +N++G+K G+T + G+N+  S       I+ + +G  +++ R     +L+   L+
Sbjct: 229 NNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSKLLNWALQ 283


>gi|90416209|ref|ZP_01224141.1| D-ala-D-ala-carboxypeptidase [marine gamma proteobacterium
           HTCC2207]
 gi|90331934|gb|EAS47148.1| D-ala-D-ala-carboxypeptidase [marine gamma proteobacterium
           HTCC2207]
          Length = 391

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 143/251 (56%), Gaps = 9/251 (3%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           +I    EL AK   + I+ID N    +     D P  PASL KMMT YI+   + + ++ 
Sbjct: 27  LIPAPPELAAK---AYILIDANTGHILVENNADMPLPPASLVKMMTTYIVSNEIAAGRMS 83

Query: 100 LNTQIPVS-----KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
            +  + +S     K  A  + S ++L  +T  +    +  +I +S ND S A  E ISG 
Sbjct: 84  KDETVLISDNAWEKGGAKTDGSTMFLNPRTRVSVSDLMRGVIIQSGNDASIALAEHISGD 143

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           E  FA +M+++A  +GM +T Y N++GL  +  ++TARD ++L   + ++ P++Y  +S 
Sbjct: 144 EAAFADVMNHQASLLGMDSTQYLNSTGLPYEGMVSTARDLSLLARAIIQDHPEHYSIYSE 203

Query: 215 RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           + F+Y N    N N+LL +  ++DG+KTG+T  +G+ +V+S + +D  +++VVMG  + +
Sbjct: 204 KYFKYNNINQPNRNRLLWRDSSVDGLKTGHTNAAGYCLVSSAKRRDMRLISVVMGADSDK 263

Query: 275 ERDQKALELIT 285
            R ++  +L++
Sbjct: 264 ARARETQKLLS 274


>gi|312171708|emb|CBX79966.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Erwinia amylovora
           ATCC BAA-2158]
          Length = 411

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/272 (32%), Positives = 153/272 (56%), Gaps = 18/272 (6%)

Query: 32  GKILFLSIIMISMASELHAK------PKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLT 81
           G ++ LS+ +++ A +++ K      P+  +   I+ID N  ++   K  D  R PASLT
Sbjct: 23  GMLIALSLNVVAYADDVNIKTMIPGVPEIDAEAYILIDYNSGKVLAEKNADARRDPASLT 82

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILAL 135
           KMMT Y+I + +++ K+H +  + V K A AT NP     S ++LK        Q    +
Sbjct: 83  KMMTSYVIGQAIKAGKIHQDDMVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVSQLTRGI 142

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + +S ND   A  ++++GS+  F  LM+N  K +G+QNT ++   GL  + Q ++ARD A
Sbjct: 143 VLQSGNDACVAMADYVAGSQDTFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYSSARDMA 202

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVT 254
           ++G  L ++ P  Y  +  ++F + N    N N LL   + N+DGIKTG+T ++G+N+V 
Sbjct: 203 LIGRALIRDVPDEYAVYHEKEFTFNNIRQMNRNGLLWDTNLNVDGIKTGHTESAGYNLVA 262

Query: 255 SL-RYKDDPIVAVVMGMPTSQERDQKALELIT 285
           S    +   +++ VMG  T + R+ ++ +L+T
Sbjct: 263 SATEGQQMRLISTVMGGHTYKGRETESKKLLT 294


>gi|161869810|ref|YP_001598979.1| D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis 053442]
 gi|161595363|gb|ABX73023.1| D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis 053442]
          Length = 389

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 138/235 (58%), Gaps = 2/235 (0%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           IVID+   Q    K  + P  PA+LT++MT Y++F+ ++S  +     + + ++A     
Sbjct: 49  IVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASEG 108

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVS-TAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           S+++++     +T++ +  +I  SAND + T  G   +GS + F   M+ +A+++GM+NT
Sbjct: 109 SRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNT 168

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
           ++KN +GL  + Q++TA+D A L   L ++FP+YY  FSI+ F+++N    N N LL + 
Sbjct: 169 VFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRD 228

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           +N++G+K G+T + G+N+  S       I+ + +G  +++ R     +L+   L+
Sbjct: 229 NNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSKLLNWALQ 283


>gi|225677145|ref|ZP_03788144.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590812|gb|EEH12040.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 368

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/213 (34%), Positives = 118/213 (55%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   P+S++K+MTLYI F+YL++  +H+  +  VS+ A  +  S ++LKE    T  + 
Sbjct: 47  DEKMAPSSMSKLMTLYIAFDYLKAGIIHMEDKFRVSRKAWERRGSSMFLKEGQSVTVREL 106

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +   S ND      E I+GSE+ F   M+  A+ + + ++ + N+SG  D++    A
Sbjct: 107 LEGITIVSGNDACITLAEGIAGSEENFVAEMNEVAQNLNLNDSHFVNSSGWPDEDHFMNA 166

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +D  +L   +  +FP+YY  FS +   Y   +  N N LL     +DG+KTGYT   G+ 
Sbjct: 167 KDLVMLAKRIFTDFPEYYDLFSEQYLTYNEIVQKNKNLLLFHDIGVDGLKTGYTNAGGYG 226

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           IV S +  D  I AVV G+ T +ER ++A  LI
Sbjct: 227 IVASAKRNDRRIFAVVNGLNTEKERIEEAKRLI 259


>gi|73539986|ref|YP_294506.1| penicillin-binding protein 6 [Ralstonia eutropha JMP134]
 gi|72117399|gb|AAZ59662.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Ralstonia eutropha JMP134]
          Length = 399

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/241 (32%), Positives = 141/241 (58%), Gaps = 12/241 (4%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S ++ DV   Q    +  + R  PASLTK+MT Y+ FE L+ K+L L+  + V  T   +
Sbjct: 45  SWMLFDVTSGQALASQNADQRIEPASLTKLMTAYLAFEALKEKRLTLDQAV-VPTTLVLK 103

Query: 114 ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
              + S+++++     + +  ++ LI +S ND + A  E + GSE+ F  +M+ +A+++G
Sbjct: 104 VKSDESRMFIEPNKPVSVQDLLMGLIVQSGNDAALALAEAVGGSEEGFVAMMNREAQRMG 163

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+NT + N  G+ D N  TTA D A L   L ++FP+YY  +S ++F Y      N N+L
Sbjct: 164 MKNTHFTNTDGIPDPNHYTTAVDLATLTTRLIQDFPEYYGMYSQKEFTYNKIKQPNRNRL 223

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLR--YKDDP-----IVAVVMGMPTSQERDQKALEL 283
           L     +DG+KTG+T+++G+ +++S +    + P     +++VV+G  T Q R Q++L++
Sbjct: 224 LYIDPTVDGVKTGHTKSAGYCLISSAKRPLANVPNGSRRLISVVIGTTTEQVRTQESLKI 283

Query: 284 I 284
           +
Sbjct: 284 L 284


>gi|169351113|ref|ZP_02868051.1| hypothetical protein CLOSPI_01892 [Clostridium spiroforme DSM 1552]
 gi|169292175|gb|EDS74308.1| hypothetical protein CLOSPI_01892 [Clostridium spiroforme DSM 1552]
          Length = 380

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/258 (32%), Positives = 145/258 (56%), Gaps = 11/258 (4%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
            +I+ID +  Q+   K  D+  +PAS TK+MT+ I+FE + +KK+  + Q+  SK AA+ 
Sbjct: 33  GAILIDADSKQILYDKNADKKLFPASTTKIMTMIIMFEAINNKKISFDDQVTTSKYAASM 92

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S++YL+E    + E    ++   SAND S A  E+I+GS  KF  +M+ KAK++ ++N
Sbjct: 93  GGSQVYLEEGENMSLEDMFKSIAIASANDASVAVSEYIAGSTNKFVEMMNQKAKELNLKN 152

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRK-------NFPQYYKYFSIRKFRYRNRIITN 226
           T ++N +GLHD N  T   D A++   L K       +    Y  + IR+   ++  + N
Sbjct: 153 THFENVTGLHDNNHYTCPYDLAMMASYLIKIGGNKLLSVTSLYDSY-IREDTKQSFWLVN 211

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            NKLL     +DG+KTGYT+ +G+ +VT+ +     +V VVM     ++R+++   L+  
Sbjct: 212 TNKLLKLYDGVDGLKTGYTKEAGYCLVTTAKRDGQRLVGVVMKESEPKKRNEEMCNLLDY 271

Query: 287 FLEKKTLKHQQTHRKDNL 304
            L     K +  ++KD++
Sbjct: 272 GL--NNYKREIIYKKDSI 287


>gi|226331025|ref|ZP_03806543.1| hypothetical protein PROPEN_04955 [Proteus penneri ATCC 35198]
 gi|225201820|gb|EEG84174.1| hypothetical protein PROPEN_04955 [Proteus penneri ATCC 35198]
          Length = 367

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/270 (32%), Positives = 149/270 (55%), Gaps = 12/270 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI     + A+   S I+ID N  + +     D  R PASLTKMMT Y+I + +++ K+ 
Sbjct: 1   MIPAVPSIEAE---SYILIDYNSGKVLAEMNADVRRDPASLTKMMTSYVIGQSIRAGKIS 57

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            +  +P+ + A AT NP     S ++LK     T  Q    +  +S ND   A   +++G
Sbjct: 58  NSDIVPIGEEAWATGNPIFRGSSLMFLKPGDQVTVAQLTRGINLQSGNDACVAMASYVAG 117

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  +M++  K++G+QNT ++   GL    Q +TARD A++G  L ++ P  Y  + 
Sbjct: 118 SQDTFVAMMNDYVKRLGLQNTQFQTVHGLDAPGQYSTARDMALIGAALIRDVPDEYAIYK 177

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            +++ Y N   TN N LL +   N+DGIKTG+T ++G+N+V S    +  +++ VMG  +
Sbjct: 178 EKEYTYNNIRQTNRNGLLWDTSLNVDGIKTGHTASAGYNLVASATEGNMRLISAVMGGHS 237

Query: 273 SQERDQKALELIT-SFLEKKTLKHQQTHRK 301
            + RD ++ +L+T  F   +T+K  Q  ++
Sbjct: 238 PKGRDVESKKLLTWGFRFFETVKPLQVGKE 267


>gi|42520006|ref|NP_965921.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|99035928|ref|ZP_01314975.1| hypothetical protein Wendoof_01000183 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|42409743|gb|AAS13855.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 368

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/213 (34%), Positives = 118/213 (55%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   P+S++K+MTLYI F+YL++  +H+  +  VS+ A  +  S ++LKE    T  + 
Sbjct: 47  DEKMAPSSMSKLMTLYIAFDYLKAGIIHMEDKFRVSRKAWERRGSSMFLKEGQSVTVREL 106

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +   S ND      E I+GSE+ F   M+  A+ + + ++ + N+SG  D++    A
Sbjct: 107 LEGITIVSGNDACITLAEGIAGSEENFVAEMNEVAQNLNLNDSHFVNSSGWPDEDHFMNA 166

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +D  +L   +  +FP+YY  FS +   Y   +  N N LL     +DG+KTGYT   G+ 
Sbjct: 167 KDLVMLAKRIFTDFPEYYDLFSEQYLTYNEIVQKNKNLLLFHDIGVDGLKTGYTNAGGYG 226

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           IV S +  D  I AVV G+ T +ER ++A  LI
Sbjct: 227 IVASAKRNDRRIFAVVNGLNTEKERIEEAKRLI 259


>gi|53729243|ref|ZP_00133773.2| COG1686: D-alanyl-D-alanine carboxypeptidase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126209060|ref|YP_001054285.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus
           pleuropneumoniae L20]
 gi|165977032|ref|YP_001652625.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|190150927|ref|YP_001969452.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303250838|ref|ZP_07337032.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|303253460|ref|ZP_07339602.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307248643|ref|ZP_07530657.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307250875|ref|ZP_07532803.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307253259|ref|ZP_07535133.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307257674|ref|ZP_07539433.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307264281|ref|ZP_07545870.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126097852|gb|ABN74680.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165877133|gb|ABY70181.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|189916058|gb|ACE62310.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302647704|gb|EFL77918.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302650351|gb|EFL80513.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306854854|gb|EFM87043.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306857125|gb|EFM89253.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306859246|gb|EFM91285.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306863849|gb|EFM95773.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306870345|gb|EFN02100.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 392

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/251 (32%), Positives = 145/251 (57%), Gaps = 7/251 (2%)

Query: 57  IVIDVNK-NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-- 113
           I++D N  N +     D+ +YPASLTKMMT Y++ + L+  K+  +  + V++ +  Q  
Sbjct: 41  ILMDYNSGNVLASLNPDQRQYPASLTKMMTSYVVGDALKQGKVKNSDMVTVTENSWAQKF 100

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S ++L   T  +    +  LI  S ND + A  E  SGS++ F   M+   ++ G++
Sbjct: 101 PGSSLMFLDLNTQVSVADLMRGLIIVSGNDAAVALAEHTSGSQQAFIDQMNKFGQQFGLK 160

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-NRIITNHNKLL 231
           NT +    GL D NQ ++ARD AI+G+ + ++ P+ YK ++ ++F+Y   +   N N LL
Sbjct: 161 NTNFTTVHGLDDPNQYSSARDMAIIGVHVIRDQPEEYKIYAEKEFKYNIKKAQPNRNGLL 220

Query: 232 -NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI-TSFLE 289
            +K  N+DG+KTG+T  +G+N+V S    +  +++VVMG+PT + R+ ++ +L+   F  
Sbjct: 221 WDKTINVDGMKTGHTSQAGYNLVASATNNNTRLISVVMGVPTYKGREVESKKLLQWGFAN 280

Query: 290 KKTLKHQQTHR 300
            +T+K  Q  +
Sbjct: 281 FETVKSLQAGQ 291


>gi|308186017|ref|YP_003930148.1| D-alanine carboxypeptidase [Pantoea vagans C9-1]
 gi|308056527|gb|ADO08699.1| D-alanine carboxypeptidase [Pantoea vagans C9-1]
          Length = 420

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/237 (34%), Positives = 134/237 (56%), Gaps = 8/237 (3%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           ++ID N  ++   K  D  R PASLTKMMT Y+I + +++ K+H +  + V   A AT N
Sbjct: 67  VLIDYNSGKVLAEKNADARRDPASLTKMMTSYVIGQAVKAGKIHQDDMVTVGPDAWATGN 126

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S ++LK        Q    ++ +S ND   A  ++++GS+  F  LM+N  K I
Sbjct: 127 PVFKGSSLMFLKPGDRVPVSQLTRGIVLQSGNDACVAMADYVAGSQDAFVNLMNNYVKAI 186

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+QNT +    GL  + Q ++ARD A++G  L ++ P+ Y  +  ++F + N    N N 
Sbjct: 187 GLQNTHFGTVHGLDAEGQYSSARDMALIGQALIRDVPEEYAVYKEKEFTFNNIRQMNRNG 246

Query: 230 LLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL   + N+DGIKTG+T ++G+N+V S       +++ VMG  T + R+ ++ +L+T
Sbjct: 247 LLWDTNLNVDGIKTGHTNSAGYNLVASATEGQMRLISAVMGGHTFKGRETESKKLLT 303


>gi|307246518|ref|ZP_07528590.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307255504|ref|ZP_07537310.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259955|ref|ZP_07541668.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307262081|ref|ZP_07543735.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306852581|gb|EFM84814.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306861546|gb|EFM93534.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306865983|gb|EFM97858.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306868260|gb|EFN00083.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 392

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/251 (32%), Positives = 145/251 (57%), Gaps = 7/251 (2%)

Query: 57  IVIDVNK-NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-- 113
           I++D N  N +     D+ +YPASLTKMMT Y++ + L+  K+  +  + V++ +  Q  
Sbjct: 41  ILMDYNSGNVLASLNPDQRQYPASLTKMMTSYVVGDALKQGKVKNSDMVTVTENSWAQKF 100

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S ++L   T  +    +  LI  S ND + A  E  SGS++ F   M+   ++ G++
Sbjct: 101 PGSSLMFLDLNTQVSVADLMRGLIIVSGNDAAVALAEHTSGSQQAFIDQMNKFGQQFGLK 160

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-NRIITNHNKLL 231
           NT +    GL D NQ ++ARD AI+G+ + ++ P+ YK ++ ++F+Y   +   N N LL
Sbjct: 161 NTNFTTVHGLDDPNQYSSARDMAIIGVHVIRDQPEEYKIYAEKEFKYNIKKAQPNRNGLL 220

Query: 232 -NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI-TSFLE 289
            +K  N+DG+KTG+T  +G+N+V S    +  +++VVMG+PT + R+ ++ +L+   F  
Sbjct: 221 WDKTINVDGMKTGHTSQAGYNLVASATNNNTRLISVVMGVPTYKGREVESKKLLQWGFAN 280

Query: 290 KKTLKHQQTHR 300
            +T+K  Q  +
Sbjct: 281 FETVKSLQAGQ 291


>gi|301630478|ref|XP_002944344.1| PREDICTED: d-alanyl-D-alanine carboxypeptidase dacC-like, partial
           [Xenopus (Silurana) tropicalis]
          Length = 294

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 135/238 (56%), Gaps = 11/238 (4%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +++DV   Q+   K  D P   ASLTK+MT Y++F+ L++KK+ L  ++PVS+ A     
Sbjct: 40  LLVDVTAGQVLAAKDIDAPVEQASLTKLMTGYLVFDALRAKKIALAQKLPVSERAWKMPG 99

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S++++  K     +  +  +I +S ND + A  E + GS + F  LM+ +A+ +GM  T 
Sbjct: 100 SRMFIDPKMQIPVDDLLKGMIVQSGNDATVALAEGVGGSVENFVHLMNEQARALGMTGTS 159

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT---NHNKLLN 232
           YKN  GL +    TTA+D A+L   L ++FP+Y  Y++ R + Y     +   N N LL 
Sbjct: 160 YKNPEGLTEPGHSTTAKDLALLVQRLMQDFPEYMHYYATRHYAYPGTPKSNGNNRNTLLF 219

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDP------IVAVVMGMPTSQERDQKALELI 284
           +   +DG+KTGYT  +G+ +V + R ++ P      ++++V+G  +   R  ++ +L+
Sbjct: 220 RDPTVDGLKTGYTAAAGYCLVATSR-REFPQLGQRRLLSIVLGTASENARSNESQKLL 276


>gi|188534483|ref|YP_001908280.1| D-alanyl-D-alanine carboxypeptidase fraction A [Erwinia
           tasmaniensis Et1/99]
 gi|188029525|emb|CAO97402.1| Penicillin-binding protein 5 [Erwinia tasmaniensis Et1/99]
          Length = 404

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/273 (31%), Positives = 154/273 (56%), Gaps = 18/273 (6%)

Query: 31  MGKILFLSIIMISMASELHAK------PKYSS---IVIDVNKNQMTGFKQ-DEPRYPASL 80
           +G ++ LS+ +++ A +++ K      P+  +   ++ID N  ++   K  D  R PASL
Sbjct: 15  LGSLIALSLNVVAYADDVNIKTMIPGVPEIDAEAYVLIDYNSGKVLAEKNADARRDPASL 74

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILA 134
           TKMMT Y+I + +++ K+H +  + V K A AT NP     S ++LK        Q    
Sbjct: 75  TKMMTSYVIGQAIKAGKIHQDDIVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVSQLTRG 134

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           ++ +S ND   A  ++++GS+  F  LM+N  K +G+QNT ++   GL  + Q ++ARD 
Sbjct: 135 IVLQSGNDACVAMADYVAGSQDTFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYSSARDM 194

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIV 253
           A++G  L ++ P  Y  +  ++F + N    N N LL +   N+DGIKTG+T ++G+N+V
Sbjct: 195 ALIGRALIRDVPDEYAVYHEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTESAGYNLV 254

Query: 254 TSL-RYKDDPIVAVVMGMPTSQERDQKALELIT 285
            S    +   +++ VMG  T + R+ ++ +L+T
Sbjct: 255 ASATEGQQMRLISAVMGGHTYKGRETESKKLLT 287


>gi|254448546|ref|ZP_05062006.1| penicillin-binding protein 5 [gamma proteobacterium HTCC5015]
 gi|198261929|gb|EDY86214.1| penicillin-binding protein 5 [gamma proteobacterium HTCC5015]
          Length = 401

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 122/207 (58%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   PAS+TK+MT Y++++ + S  + ++  +PVS+ A     S+++++       E  
Sbjct: 75  DERIEPASITKIMTSYVVYQAIDSGLISMSDSVPVSEKAWRMKGSRMFIEVGKSVPLEAL 134

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  L+ +S ND + A  E++ G+E+ FA  M+  AK +GM  + + N++G    +  TTA
Sbjct: 135 LKGLVIQSGNDAAVALAEYVGGTEEAFAEQMNAAAKALGMTGSHFVNSTGWPHADHYTTA 194

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           RD AIL   L +++P++Y+ ++ + + Y +    N N LL +  ++DGIKTG+T  +G+ 
Sbjct: 195 RDIAILSHALIRDYPEHYRVYAEKNYTYNSIKQPNRNALLWRDSSVDGIKTGHTEAAGYC 254

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +  S R  D  +++VVMG  +S  R Q
Sbjct: 255 LAASARRDDMRLISVVMGTESSGARSQ 281


>gi|163732221|ref|ZP_02139667.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter litoralis Och 149]
 gi|161394519|gb|EDQ18842.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter litoralis Och 149]
          Length = 389

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 129/233 (55%), Gaps = 15/233 (6%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKK----LHLNTQIPVSKTAATQNPS 116
           +NKN       D P  PAS++K+MTLY+ FE ++  K    L LN  +PVS+ A +   S
Sbjct: 40  LNKNA------DAPLPPASMSKLMTLYMAFEAVRRGKADGGLDLNELLPVSEHAQSYGGS 93

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKIGMQNT 174
            ++L+     + E  +  +I  S ND      E +S  G+E  FA +M+ +A+++GM N+
Sbjct: 94  SMFLRSGETVSVEDLLRGIIVVSGNDACVVIAEALSPDGTEYGFARMMTQRAQQLGMNNS 153

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT---NHNKLL 231
            + NASG      + + RD AIL   L  +FP++Y  F+  +F + NR+ +   N N +L
Sbjct: 154 TFINASGWPQTGHVMSMRDLAILADRLITDFPEFYPMFAETEFPFDNRVPSNSRNRNPVL 213

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                 DG+KTG+T+ +G+ +V S +  D  ++ V+ G+ T+  R Q++  ++
Sbjct: 214 TMGIGADGLKTGHTQEAGYGLVGSAKQGDRRVIFVITGLETTAARAQESQAIV 266


>gi|167579652|ref|ZP_02372526.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis TXDOH]
          Length = 375

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 136/240 (56%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D + NQ +     DE   PASLTK+MT Y++FE L SKK+ +   +  S+     
Sbjct: 20  SWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDSKKITMEQIVTPSEAVRRV 79

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+ +A+++GM
Sbjct: 80  GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAQAQRLGM 139

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
            +T + + +G+ D N  TTA D A L   L +++P YY  FS+++F Y N    N N+LL
Sbjct: 140 THTHFADVNGMPDPNHYTTAGDLATLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLL 199

Query: 232 NKMHNIDGIKTGYTRNSGFNIVT----SLRYKDDP---IVAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++     SL    D    +V V+MG     +R Q +++++
Sbjct: 200 WLDPTVDGLKTGHTQAAGYCLIASAKRSLPGAADATRRLVTVMMGETKESDRVQDSMKML 259


>gi|300722312|ref|YP_003711597.1| D-alanyl-D-alanine carboxypeptidase [Xenorhabdus nematophila ATCC
           19061]
 gi|297628814|emb|CBJ89392.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Xenorhabdus nematophila ATCC 19061]
          Length = 402

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/258 (34%), Positives = 145/258 (56%), Gaps = 21/258 (8%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    EL ++   + I+ID N  ++   K  D  R PASLTKMMT Y+I + ++S K+ 
Sbjct: 36  MIPGVPELDSE---AYILIDYNSGKILAEKNADVRRDPASLTKMMTSYVIGQAIKSGKIG 92

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITR-----SANDVSTAFG 148
            N  + V K A AT NP     S ++LK       +Q  +A+++R     S ND   A  
Sbjct: 93  PNDIVTVGKDAWATGNPIFKGSSLMFLKPG-----DQVSVAMLSRGINLQSGNDACVAMA 147

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           ++++GS+  F  LM+   + +G+QNT ++   GL    Q ++ARD A++G  L ++ P  
Sbjct: 148 DYVAGSQDAFVSLMNKYVQSLGLQNTHFQTVHGLDANGQYSSARDMALIGQALIRDVPDE 207

Query: 209 YKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           Y  +  ++F Y N    N N LL +K  N+DGIKTG+T  +G+N+V+S    +  +++ V
Sbjct: 208 YAIYKEKEFTYNNIRQPNRNGLLWDKSLNVDGIKTGHTSGAGYNLVSSATEGNMRLISAV 267

Query: 268 MGMPTSQERDQKALELIT 285
           MG PT + R+  + +L+T
Sbjct: 268 MGSPTFKGREGDSKKLLT 285


>gi|283479159|emb|CAY75075.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Erwinia pyrifoliae
           DSM 12163]
          Length = 411

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/272 (31%), Positives = 153/272 (56%), Gaps = 18/272 (6%)

Query: 32  GKILFLSIIMISMASELHAK------PKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLT 81
           G ++ LS+ +++ A +++ K      P   +   ++ID N  ++   K  D  R PASLT
Sbjct: 23  GMLIALSLNVVAYADDVNIKTMIPGVPDIDAEAYVLIDYNSGKVLAEKNADARRDPASLT 82

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILAL 135
           KMMT Y+I + +++ K+H +  + V K A AT NP     S ++LK        Q    +
Sbjct: 83  KMMTSYVIGQAIKAGKIHQDDMVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVSQLTRGI 142

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + +S ND   A  ++++GS++ F  LM+N  K +G+QNT ++   GL  + Q ++ARD A
Sbjct: 143 VLQSGNDACVAMADYVAGSQETFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYSSARDMA 202

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVT 254
           ++G  L ++ P  Y  +  ++F + N    N N LL +   N+DGIKTG+T ++G+N+V 
Sbjct: 203 LIGRALIRDVPDEYAVYHEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTESAGYNLVA 262

Query: 255 SL-RYKDDPIVAVVMGMPTSQERDQKALELIT 285
           S    +   +++ VMG  T + R+ ++ +L+T
Sbjct: 263 SATEGQQMRLISTVMGGHTYKGRETESKKLLT 294


>gi|325519264|gb|EGC98711.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. TJI49]
          Length = 354

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 136/238 (57%), Gaps = 11/238 (4%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQ 113
           +++D   N  +     DE   PASLTK+MT Y++FE L  KK+ +   +  S+      +
Sbjct: 2   VLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSEAVRRVGR 61

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           + S+++++     +    +  +I +S ND + A  E + GSE +F  +M+++A+++GM+ 
Sbjct: 62  DESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVTMMNDEAQRLGMKG 121

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F+Y N    N N+LL  
Sbjct: 122 THFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFKYNNIRQGNRNRLLWL 181

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDP-------IVAVVMGMPTSQERDQKALELI 284
              +DG+KTG+T+ +G+ ++ S + +  P       +V+V+MG     +R Q +++++
Sbjct: 182 DPTVDGLKTGHTQAAGYCLIASSK-RAIPGSDGQRRLVSVMMGEQKESDRTQDSMKML 238


>gi|37525261|ref|NP_928605.1| D-alanyl-D-alanine carboxypeptidase fraction A [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36784688|emb|CAE13588.1| penicillin-binding protein 5 precursor (D-alanyl-D-alanine
           carboxypeptidase fraction A) (DD-peptidase)
           (DD-caroboxypeptidase) (PBP-5) [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 389

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/237 (34%), Positives = 135/237 (56%), Gaps = 8/237 (3%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           I+ID N  + +     D  R PASLTKMMT Y+I + ++S K+H +  + V   A AT N
Sbjct: 36  ILIDYNSGKVLAEMNADAHRDPASLTKMMTSYVIGQAIKSGKIHPSDMVTVGTDAWATGN 95

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S ++LK     +       +  +S ND   A  ++++GS++ F  LM+   K +
Sbjct: 96  PVFKGSSLMFLKPGDQVSVSMLSRGINLQSGNDACVAMADYVAGSQESFVNLMNGYVKSL 155

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G++NT +K   GL  + Q ++ARD A++G  L ++ P+ Y  +  ++F Y N   TN N 
Sbjct: 156 GLKNTNFKTVHGLDAEGQYSSARDMALIGQALIRDVPEEYTIYKEKEFTYNNIRQTNRNG 215

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL +K  N+DGIKTG+T  +G+N+V S    D  +++ V+G  T + R+ ++ +L+T
Sbjct: 216 LLWDKSLNVDGIKTGHTSAAGYNLVASATEGDMRLISAVLGGHTYKGRETESKKLLT 272


>gi|269139992|ref|YP_003296693.1| D-alanyl-D-alanine carboxypeptidase fraction A [Edwardsiella tarda
           EIB202]
 gi|267985653|gb|ACY85482.1| D-alanyl-D-alanine carboxypeptidase fraction A [Edwardsiella tarda
           EIB202]
 gi|304559825|gb|ADM42489.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda FL6-60]
          Length = 403

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/237 (35%), Positives = 133/237 (56%), Gaps = 8/237 (3%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           I+ID N  + +     DE R PASLTKMMT Y+I + +++ K   N  + V K A AT N
Sbjct: 50  ILIDYNSGKVLAEHNADERRNPASLTKMMTSYVIGQAMRAGKFGENDVVTVGKDAWATGN 109

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S ++LK     +    I  +   S ND   A  ++++GS+  F  LM++  K +
Sbjct: 110 PVFQGSSLMFLKPGDQVSVGNLIRGINLVSGNDACVAMADYVAGSQDAFVGLMNSYVKAL 169

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+QNT ++   GL    Q ++ARD A++G  L ++ P  Y  +  ++F Y N   TN N 
Sbjct: 170 GLQNTHFETVHGLDASGQFSSARDMALIGQALIRDVPHEYAIYKEKEFTYNNIRQTNRNG 229

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL +   N+DGIKTG+T ++G+N+V S    +  +++ VMG  T + R+ ++ +L+T
Sbjct: 230 LLWDTSMNVDGIKTGHTASAGYNLVASATEGNMRLISAVMGGRTFKGRETESKKLLT 286


>gi|300023249|ref|YP_003755860.1| serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525070|gb|ADJ23539.1| Serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 397

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 147/279 (52%), Gaps = 25/279 (8%)

Query: 28  IQLMGKILFLSIIMISMASELHAK---------------PKYSSIVIDVNKNQMTGFKQ- 71
           IQ   ++L  ++I IS+ + +  +               P+  +I+ID      T F+Q 
Sbjct: 3   IQACARVLVSALIAISVLTAVGPEANPALAAEAAFTSKAPR--AILIDAATGA-TLFQQH 59

Query: 72  -DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTY 125
            DEP  PAS++K+MTL ++F  ++  ++    +  +S  A     A    S + +   T 
Sbjct: 60  ADEPAPPASMSKLMTLAVLFRAMKEGRIQKTDEFTMSVNAWRNGGAPSGTSAMMVPVNTK 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            T ++ I  ++ +S ND +    E ++GS   FA +M+++AK+IG+  + + NASGL D 
Sbjct: 120 VTVDELIQGIVIQSGNDAAMCVAEGMAGSIPAFARMMNDEAKRIGLTKSTFTNASGLPDP 179

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
            Q+ +ARD A+L   +   +P YY  F+ ++F YR     N N LL +    DG+KTG+T
Sbjct: 180 QQVMSARDLAVLARYIIDEYPDYYPVFAQKEFLYRKHRFINRNPLLFQNIGADGLKTGHT 239

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
             +GF +V S       ++ VV G+  + +R ++A++L+
Sbjct: 240 AAAGFGLVGSAVQDGKRLIVVVSGLEKADQRKEEAVKLL 278


>gi|119384875|ref|YP_915931.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paracoccus denitrificans
           PD1222]
 gi|119374642|gb|ABL70235.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paracoccus denitrificans
           PD1222]
          Length = 385

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 123/219 (56%), Gaps = 6/219 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DEP  PAS++K+MTL ++FE L   ++ ++T  PVS  A     SK++++     T E  
Sbjct: 46  DEPLPPASMSKLMTLNMLFEALHDGRVAMDTTFPVSTKAWQMGGSKMFVEPADRPTVEDL 105

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           I  +I  S ND      E ++G+E+ FA LM+ +A+++GM N+ + N+SG  D     + 
Sbjct: 106 IHGIIINSGNDACVVVAEGLAGTEEAFARLMNERARQLGMANSHFVNSSGWPDPQHRMSM 165

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT---NHNKLL---NKMHNIDGIKTGYT 245
            D  +L   L   FP+ YK F++ ++ Y+ R+ +   N N LL         DG+KTG+T
Sbjct: 166 HDLGLLATRLITEFPELYKNFALTEYNYKGRVPSNAGNRNPLLRLGTGDWKADGLKTGHT 225

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           + +G+ +V S    D  IV V+ G+ + + R ++A +++
Sbjct: 226 QEAGYGLVGSAVQGDRRIVFVITGLSSEKARAEEAEQIV 264


>gi|253990639|ref|YP_003041995.1| D-alanyl-D-alanine carboxypeptidase fraction A [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782089|emb|CAQ85253.1| penicillin-binding protein 5 precursor [Photorhabdus asymbiotica]
          Length = 428

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/237 (35%), Positives = 134/237 (56%), Gaps = 8/237 (3%)

Query: 57  IVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           I+ID N  ++      D  R PASLTKMMT Y+I + ++S K+  N  + V   A AT N
Sbjct: 75  ILIDYNSGKVLAEMNADSHRDPASLTKMMTSYVIGQAIKSGKIGPNDMVTVGTDAWATGN 134

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S ++LK     +       +  +S ND   A  ++++GS++ F  LM+   K +
Sbjct: 135 PVFKGSSLMFLKPGDQVSVSMLSRGINLQSGNDACVAMADYVAGSQESFVNLMNGYVKSL 194

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+QNT +K   GL  + Q ++ARD A++G  L ++ P+ Y  +  ++F Y N   TN N 
Sbjct: 195 GLQNTNFKTVHGLDAEGQYSSARDMALIGQALIRDVPEEYAIYKEKEFTYNNIRQTNRNG 254

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL +K  N+DGIKTG+T  +G+N+V S    D  +++ V+G  T + R+ ++ +L+T
Sbjct: 255 LLWDKSLNVDGIKTGHTNAAGYNLVASATEGDMRLISAVLGGHTYKGRETESKKLLT 311


>gi|259909131|ref|YP_002649487.1| D-alanyl-D-alanine carboxypeptidase fraction A [Erwinia pyrifoliae
           Ep1/96]
 gi|224964753|emb|CAX56270.1| penicillin-binding protein 5 [Erwinia pyrifoliae Ep1/96]
          Length = 404

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/272 (31%), Positives = 153/272 (56%), Gaps = 18/272 (6%)

Query: 32  GKILFLSIIMISMASELHAK------PKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLT 81
           G ++ LS+ +++ A +++ K      P   +   ++ID N  ++   K  D  R PASLT
Sbjct: 16  GMLIALSLNVVAYADDVNIKTMIPGVPDIDAEAYVLIDYNSGKVLAEKNADARRDPASLT 75

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILAL 135
           KMMT Y+I + +++ K+H +  + V K A AT NP     S ++LK        Q    +
Sbjct: 76  KMMTSYVIGQAIKAGKIHQDDMVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVSQLTRGI 135

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + +S ND   A  ++++GS++ F  LM+N  K +G+QNT ++   GL  + Q ++ARD A
Sbjct: 136 VLQSGNDACVAMADYVAGSQETFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYSSARDMA 195

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVT 254
           ++G  L ++ P  Y  +  ++F + N    N N LL +   N+DGIKTG+T ++G+N+V 
Sbjct: 196 LIGRALIRDVPDEYAVYHEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTESAGYNLVA 255

Query: 255 SL-RYKDDPIVAVVMGMPTSQERDQKALELIT 285
           S    +   +++ VMG  T + R+ ++ +L+T
Sbjct: 256 SATEGQQMRLISTVMGGHTYKGRETESKKLLT 287


>gi|58038510|ref|YP_190474.1| D-alanyl-D-alanine carboxypeptidase [Gluconobacter oxydans 621H]
 gi|58000924|gb|AAW59818.1| D-alanyl-D-alanine carboxypeptidase [Gluconobacter oxydans 621H]
          Length = 424

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/214 (34%), Positives = 116/214 (54%), Gaps = 1/214 (0%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   P+SLTKMMT YI+F  L + ++ L   +PVS+ A     SK+++           
Sbjct: 99  DERMAPSSLTKMMTAYIVFGMLATGRIRLEQSLPVSEKAWRTQGSKMFVPLGQSVLVSDL 158

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           I  ++ +S ND      E I+GSE++F  +M+ +A K+GM N+ + N +GL       TA
Sbjct: 159 IQGMLIQSGNDACIVLAEGIAGSEERFVAMMNEEAPKLGMMNSHFVNVTGLPADGHYMTA 218

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           RD A +   L ++FPQYY YF   +F Y +    N N L++K    DG+KTG+T   GF 
Sbjct: 219 RDVATVASHLIRDFPQYYHYFGELEFTYNHIRQGNRNVLVDK-GLADGLKTGHTEAGGFG 277

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +  S +   + ++ V+ G  +S ER  +   L++
Sbjct: 278 LCASSQRNGNRVIVVINGSSSSNERAHEGERLMS 311


>gi|124265504|ref|YP_001019508.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylibium
           petroleiphilum PM1]
 gi|124258279|gb|ABM93273.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylibium
           petroleiphilum PM1]
          Length = 384

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 135/238 (56%), Gaps = 8/238 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           S ++ DV  NQ+   K  D P  PASLTK+M+ Y++F+ L+ KKL L   +PVS+ A   
Sbjct: 34  SYLLFDVTTNQVLAAKDPDSPIEPASLTKLMSAYLVFQALKDKKLTLTQTLPVSERAWRT 93

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S+ +L   +  T +  +   I +S ND +    E + GS ++F  +M+ +A+  G
Sbjct: 94  GMTGASRSFLPLNSQVTVDDLLKGEIVQSGNDATVVLAEGVGGSLEQFVAMMNRQAQAFG 153

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           ++ T +KN  GL      +TARD A++   L ++FP+Y +Y  +R+F +      N N L
Sbjct: 154 LKATTFKNPEGLPAAGHTSTARDLAVIATRLVQDFPEYLRYSVMREFTFNKIKQPNRNLL 213

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLR--YKDDP--IVAVVMGMPTSQERDQKALELI 284
           L +   +DG+KTG+T  +G+ ++T+ +  + + P  +++VV+G  + + R  ++ +L+
Sbjct: 214 LYRDPTVDGLKTGFTDAAGYCMITTAKRDFPNGPRRLISVVLGAASMESRANESQKLL 271


>gi|190571728|ref|YP_001976086.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|190358000|emb|CAQ55464.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
          Length = 368

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 144/261 (55%), Gaps = 8/261 (3%)

Query: 30  LMGKILFLSIIMI----SMASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKM 83
           ++ K++ L +I I    S + +   K K  +IV+D+  +    F+ +  E   P+S++K+
Sbjct: 1   MLSKLVTLLLIFIFPFYSYSYQFRTKAK-QAIVLDLASDSFI-FEHNSREKMAPSSMSKL 58

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MTLY+ F+YL++  + +  +  VS+ A  +  S ++LKE  + T ++ +  +   S ND 
Sbjct: 59  MTLYVAFDYLKAGIIKMEDKFRVSRKAWERKGSSMFLKEGQFVTVKELLEGITIASGNDA 118

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
             A  E I+GSE+ F   M+  A+ + + ++ + N+SG  D+N   +A+D   L   +  
Sbjct: 119 CIALAEGIAGSEENFVAEMNEVAQDLNLNDSHFVNSSGWPDENHFMSAKDLVTLAKRIFT 178

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           +FP+YY  FS +   Y + +  N N LL     +DG+KTG+T   G+ I+ S +  D  I
Sbjct: 179 DFPEYYDLFSEQYLTYNDIVQKNKNLLLFHDIGVDGLKTGHTSAGGYGIIVSAKRNDRRI 238

Query: 264 VAVVMGMPTSQERDQKALELI 284
            AVV G+ T +ER ++A  LI
Sbjct: 239 FAVVNGLDTEKERIEEAKRLI 259


>gi|167835257|ref|ZP_02462140.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis MSMB43]
          Length = 374

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 137/242 (56%), Gaps = 12/242 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-- 111
           S +++D + NQ +     DE   PASLTK+MT Y++FE L +KK+ +  QI     A   
Sbjct: 19  SWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITME-QIVTPGEAVRR 77

Query: 112 -TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+ +A+++G
Sbjct: 78  VGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQFVNMMNAQAQRLG 137

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M NT + + +G+ D N  TTA D A L   L +++P YY  FS+++F Y N    N N+L
Sbjct: 138 MTNTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFAYNNIKQPNRNRL 197

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVT----SLRYKDDP---IVAVVMGMPTSQERDQKALEL 283
           L     +DG+KTG+T+ +G+ ++     SL    D    +V V+MG     +R Q ++++
Sbjct: 198 LWLDPTVDGLKTGHTQAAGYCLIASAKRSLPGAADATRRLVTVMMGETKESDRVQDSMKM 257

Query: 284 IT 285
           ++
Sbjct: 258 LS 259


>gi|312797424|ref|YP_004030346.1| D-alanyl-D-alanine serine-type carboxypeptidase [Burkholderia
           rhizoxinica HKI 454]
 gi|312169199|emb|CBW76202.1| D-alanyl-D-alanine serine-type carboxypeptidase (EC 3.4.16.4)
           [Burkholderia rhizoxinica HKI 454]
          Length = 403

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 139/243 (57%), Gaps = 16/243 (6%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN-TQIP---VSKT 109
           S +++D +  Q +     DE   PASLTK+MT Y++F+ L++KK+ ++ T +P   V + 
Sbjct: 48  SWVLVDASSAQTLASANADERVEPASLTKLMTSYLVFDALKTKKISMDQTVMPGEAVRRV 107

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
              +  S+++++     T    +  +I +S ND + A  E + GSE  F  +M+  A+K+
Sbjct: 108 GTDE--SRMFIEANKPVTVHDLVYGMIVQSGNDAAIALAELVGGSEAHFVQMMNEAAQKL 165

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM+NT Y + +G+ +    T+A D A+L   L +++P+YY  F+++ F Y      N N+
Sbjct: 166 GMKNTHYADVNGMPNPQHYTSAADLAVLSAHLIRDYPEYYSIFAVKDFTYNKIKQLNRNR 225

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP--------IVAVVMGMPTSQERDQKAL 281
           LL     +DG+KTG+T+ +G+ ++ S + +  P        +V+V+MG P   +R Q +L
Sbjct: 226 LLWIDPTVDGLKTGHTKAAGYCLIASAK-RPLPGVPDASRRLVSVMMGEPKEHDRTQDSL 284

Query: 282 ELI 284
           +++
Sbjct: 285 KML 287


>gi|310766969|gb|ADP11919.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Erwinia sp.
           Ejp617]
          Length = 411

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/272 (31%), Positives = 152/272 (55%), Gaps = 18/272 (6%)

Query: 32  GKILFLSIIMISMASELHAK------PKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLT 81
           G ++ LS+ +++ A +++ K      P   +   ++ID N  ++   K  D  R PASLT
Sbjct: 23  GMLIALSLNVVAYADDVNIKTMIPGVPDIDAEAYVLIDYNSGKVLAEKNADARRDPASLT 82

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILAL 135
           KMMT Y+I + +++ K+H +  + V K A AT NP     S ++LK        Q    +
Sbjct: 83  KMMTSYVIGQAIKAGKIHQDDMVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVSQLTRGI 142

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + +S ND   A  ++++GS++ F  LM+N  K +G+QNT ++   GL    Q ++ARD A
Sbjct: 143 VLQSGNDACVAMADYVAGSQETFVGLMNNYVKALGLQNTHFQTVHGLDADGQYSSARDMA 202

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVT 254
           ++G  L ++ P  Y  +  ++F + N    N N LL +   N+DGIKTG+T ++G+N+V 
Sbjct: 203 LIGRALIRDVPDEYAVYHEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTESAGYNLVA 262

Query: 255 SL-RYKDDPIVAVVMGMPTSQERDQKALELIT 285
           S    +   +++ VMG  T + R+ ++ +L+T
Sbjct: 263 SATEGQQMRLISTVMGGHTYKGRETESKKLLT 294


>gi|238920819|ref|YP_002934334.1| D-alanyl-D-alanine carboxypeptidase fraction A [Edwardsiella
           ictaluri 93-146]
 gi|238870388|gb|ACR70099.1| D-alanyl-D-alanine carboxypeptidase DacC [Edwardsiella ictaluri
           93-146]
          Length = 403

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/237 (35%), Positives = 133/237 (56%), Gaps = 8/237 (3%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           I+ID N  + +     DE R PASLTKMMT Y+I + +++ K   N  + V K A AT N
Sbjct: 50  ILIDYNSGKVLAEHNADERRNPASLTKMMTSYVIGQAMRAGKFGENDVVTVGKDAWATGN 109

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S ++LK     +    I  +   S ND   A  ++++GS+  F  LM++  K +
Sbjct: 110 PVFQGSSLMFLKPGDQVSVGNLIRGINLVSGNDACVAMADYVAGSQDAFVGLMNSYVKAL 169

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+QNT ++   GL    Q ++ARD A++G  L ++ P  Y  +  ++F Y N   TN N 
Sbjct: 170 GLQNTHFETVHGLDAPGQFSSARDMALIGQALIRDVPHEYAIYKEKEFTYNNIRQTNRNG 229

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL +   N+DGIKTG+T ++G+N+V S    +  +++ VMG  T + R+ ++ +L+T
Sbjct: 230 LLWDTSMNVDGIKTGHTASAGYNLVASATEGNMRLISAVMGGRTFKGRETESKKLLT 286


>gi|254670388|emb|CBA05903.1| putative penicillin-binding protein precursor [Neisseria
           meningitidis alpha153]
          Length = 389

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 138/235 (58%), Gaps = 2/235 (0%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           IVID+   Q+   K  + P  PA+LT++MT Y++F+ ++S  +     + + ++A     
Sbjct: 49  IVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASEG 108

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVS-TAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           S+++++      T++ +  +I  SAND + T  G   +GS + F   M+ +A+++GM+NT
Sbjct: 109 SRMFVRPGDTVGTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNT 168

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
           ++KN +GL  + Q++TA+D A L   L ++FP+YY  FSI+ F+++N    N N LL + 
Sbjct: 169 VFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRD 228

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           +N++G+K G+T + G+N+  S       I+ + +G  +++ R     +L+   L+
Sbjct: 229 NNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAEIRASDNSKLLNWALQ 283


>gi|294637512|ref|ZP_06715798.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC
           23685]
 gi|291089344|gb|EFE21905.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC
           23685]
          Length = 403

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/237 (35%), Positives = 132/237 (55%), Gaps = 8/237 (3%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           I+ID N  + +     DE R PASLTKMMT Y+I + +++ K   N  + V K A AT N
Sbjct: 50  ILIDYNSGKVLAEHNADERRNPASLTKMMTSYVIGQAMRAGKFGENDVVTVGKDAWATGN 109

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S ++LK     +    I  +   S ND   A  ++++GS+  F  LM+N  K +
Sbjct: 110 PVFQGSSLMFLKPGDQVSVGNLIRGINLVSGNDACVAMADYVAGSQDAFVGLMNNYVKAL 169

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+QNT ++   GL    Q ++ARD A++G  L ++ P  Y  +  ++F Y N    N N 
Sbjct: 170 GLQNTHFETVHGLDAPGQFSSARDMALIGQALIRDVPHEYAIYKEKEFTYNNIRQMNRNG 229

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL +   N+DGIKTG+T ++G+N+V S    +  +++ VMG  T + R+ ++ +L+T
Sbjct: 230 LLWDTSMNVDGIKTGHTASAGYNLVASATEGNMRLISAVMGGRTFKGRETESKKLLT 286


>gi|153830932|ref|ZP_01983599.1| penicillin-binding protein 5 [Vibrio cholerae 623-39]
 gi|148873587|gb|EDL71722.1| penicillin-binding protein 5 [Vibrio cholerae 623-39]
          Length = 354

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 86/255 (33%), Positives = 140/255 (54%), Gaps = 8/255 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           F S I+   A ++ AK     +++D +  ++   K+ D    PASLTKMMT Y+I + ++
Sbjct: 25  FASPIVTPDAPQIAAK---GYVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVIGQEVK 81

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              + LN  + +SK A  +N    SK++++  T          +I +S ND   A  E +
Sbjct: 82  RGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHV 141

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +G+E  F  LM+  A  +GM+N+ + N+ GL D N  +T  D A+LG  L ++ P+ Y  
Sbjct: 142 AGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVPEEYAI 201

Query: 212 FSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL +K  N+DGIKTG+T  +G+N+V+S    +  +VAVVMG 
Sbjct: 202 YSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGT 261

Query: 271 PTSQERDQKALELIT 285
                R  ++ +L++
Sbjct: 262 DNENARKAESKKLLS 276


>gi|254486408|ref|ZP_05099613.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. GAI101]
 gi|214043277|gb|EEB83915.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. GAI101]
          Length = 389

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 122/222 (54%), Gaps = 9/222 (4%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKK----LHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           D+P  PAS++K+MTLY+ FE ++  K    L L  ++PVS+ A +   S ++L       
Sbjct: 45  DDPLPPASMSKLMTLYMAFEAVERGKSNGGLDLTEELPVSQHAMSYGGSTMFLDTTDRVK 104

Query: 128 TEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            E  +  +I  S ND      E +S  G+E  FA LM+ +A++IGM N+ + N++G    
Sbjct: 105 VEDLLRGIIVLSGNDACAVIAEALSPDGTEAGFARLMTRRAQQIGMTNSTFANSNGWPAA 164

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII---TNHNKLLNKMHNIDGIKT 242
               + RD  ++ + L  +FPQYY  FS R+F +  R      N N LL      DG+KT
Sbjct: 165 GHRMSMRDLGLVAMRLITDFPQYYPLFSQREFLFDGRAPQNKANRNPLLGLGIGADGLKT 224

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           G+T+ +G+ +V S +  D  ++ V+ G+ T+ ER Q++  ++
Sbjct: 225 GHTQEAGYGLVGSAKQGDRRVIFVISGLETAAERAQESEAIV 266


>gi|254459679|ref|ZP_05073095.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacterales bacterium
           HTCC2083]
 gi|206676268|gb|EDZ40755.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 392

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/242 (33%), Positives = 131/242 (54%), Gaps = 18/242 (7%)

Query: 55  SSIVID-------VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS 107
           S+ VID       +NKN       D+   PAS++KMMTLYI FE L+  +L L+ ++PVS
Sbjct: 30  SAFVIDQTTGTVLLNKNA------DQMLPPASMSKMMTLYITFEALRDGRLVLDEKLPVS 83

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNK 165
           K A     S ++L      T E  I  +I  S ND      E +S  G+E  FA  M+ +
Sbjct: 84  KHAMAYGGSTMFLDTTDRITVEDLIRGIIVLSGNDACAVIAEALSPDGTEAGFARFMTQR 143

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-- 223
           A+++GM N+ + N++G        + RD A+L   +  +FP +Y  FS R+F++  R   
Sbjct: 144 AQQLGMTNSTFSNSNGWPQAGHRMSMRDLALLANRVITDFPSFYPLFSEREFKFDGRAPQ 203

Query: 224 -ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
              N N LL+     DG+KTG+T+ +G+ +V S + +   ++ V+ G+ ++Q R ++A  
Sbjct: 204 NTRNRNPLLSLGIGADGLKTGHTQEAGYGLVGSAKQRGRRVIFVISGLQSAQARAEEAES 263

Query: 283 LI 284
           ++
Sbjct: 264 IV 265


>gi|153817207|ref|ZP_01969874.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae NCTC 8457]
 gi|227081121|ref|YP_002809672.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae M66-2]
 gi|229505452|ref|ZP_04394962.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae BX 330286]
 gi|298498936|ref|ZP_07008743.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MAK 757]
 gi|126512241|gb|EAZ74835.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae NCTC 8457]
 gi|227009009|gb|ACP05221.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae M66-2]
 gi|229357675|gb|EEO22592.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae BX 330286]
 gi|297543269|gb|EFH79319.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MAK 757]
          Length = 391

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/255 (33%), Positives = 140/255 (54%), Gaps = 8/255 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           F S I+   A ++ AK     +++D +  ++   K+ D    PASLTKMMT Y+I + ++
Sbjct: 25  FASPIVTPDAPQIAAK---GYVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVIGQEVK 81

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              + LN  + +SK A  +N    SK++++  T          +I +S ND   A  E +
Sbjct: 82  RGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHV 141

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +G+E  F  LM+  A  +GM+N+ + N+ GL D N  +T  D A+LG  L ++ P+ Y  
Sbjct: 142 AGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVPEEYAI 201

Query: 212 FSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL +K  N+DGIKTG+T  +G+N+V+S    +  +VAVVMG 
Sbjct: 202 YSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGT 261

Query: 271 PTSQERDQKALELIT 285
                R  ++ +L++
Sbjct: 262 DNENARKAESKKLLS 276


>gi|254295961|ref|ZP_04963418.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei
           406e]
 gi|157805850|gb|EDO83020.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei
           406e]
          Length = 437

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 137/240 (57%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D + NQ +     DE   PASLTK+MT Y++FE L +KK+ +   +  S+     
Sbjct: 82  SWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRV 141

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+ +A+++GM
Sbjct: 142 GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGM 201

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T + + +G+ D N  TTA D A L   L +++P YY  FS+++F Y N    N N+LL
Sbjct: 202 KSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLL 261

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTS----LRYKDDP---IVAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++ S    L    D    +V V+MG     +R Q +++++
Sbjct: 262 WLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKML 321


>gi|238021408|ref|ZP_04601834.1| hypothetical protein GCWU000324_01308 [Kingella oralis ATCC 51147]
 gi|237868388|gb|EEP69394.1| hypothetical protein GCWU000324_01308 [Kingella oralis ATCC 51147]
          Length = 418

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 146/250 (58%), Gaps = 5/250 (2%)

Query: 45  ASELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           A+E   +P+ ++   +V D+  NQ +     D+   PASLTK+MT Y+ F+ L+  KL  
Sbjct: 56  AAEALKQPEIAATAYLVRDLQSNQTLVAKNTDQQIEPASLTKLMTAYLAFKALEEGKLQP 115

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
             ++ VS+ A     S+++LK  +       +  LI  S ND +    E I+GSE+ FA 
Sbjct: 116 EQKLTVSEKAWKVEGSRMFLKAHSEVPVWDLMRGLIVVSGNDAAITLAEGIAGSEEAFAK 175

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP-QYYKYFSIRKFRY 219
           +M+++AK++GM  T ++NA+GL     +T+  D AIL   + ++ P +YY+ +S + + Y
Sbjct: 176 MMNDEAKRLGMTQTYFENATGLPAPKHLTSVNDLAILSNAIIRDLPAKYYEVYSYKSYTY 235

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            N    N N LL +  ++DG+KTG+T ++G+N++ + +  +  ++++V+G  +++ R  +
Sbjct: 236 NNITQENRNLLLFRDDSVDGLKTGHTSSAGYNLIATSKRNNRRVLSIVIGAASAEARATE 295

Query: 280 ALELITSFLE 289
           + +L+   L+
Sbjct: 296 SSKLLNYALQ 305


>gi|126441761|ref|YP_001057491.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei 668]
 gi|237810642|ref|YP_002895093.1| D-alanyl-D-alanine carboxypeptidase DacC [Burkholderia pseudomallei
           MSHR346]
 gi|254187919|ref|ZP_04894431.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei
           Pasteur 52237]
 gi|126221254|gb|ABN84760.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           668]
 gi|157935599|gb|EDO91269.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei
           Pasteur 52237]
 gi|237504177|gb|ACQ96495.1| D-alanyl-D-alanine carboxypeptidase DacC [Burkholderia pseudomallei
           MSHR346]
          Length = 437

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 137/240 (57%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D + NQ +     DE   PASLTK+MT Y++FE L +KK+ +   +  S+     
Sbjct: 82  SWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRV 141

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+ +A+++GM
Sbjct: 142 GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGM 201

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T + + +G+ D N  TTA D A L   L +++P YY  FS+++F Y N    N N+LL
Sbjct: 202 KSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLL 261

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTS----LRYKDDP---IVAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++ S    L    D    +V V+MG     +R Q +++++
Sbjct: 262 WLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKML 321


>gi|330818433|ref|YP_004362138.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           gladioli BSR3]
 gi|327370826|gb|AEA62182.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           gladioli BSR3]
          Length = 434

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 134/240 (55%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D + NQ +     DE   PASLTK+MT Y++FE L +KK+ +   +  S+     
Sbjct: 80  SWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALSTKKISMEQIVTPSEAVRRV 139

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S+++++     +    +  +I +S ND + A  E + GSE +F  +M+ +A+K+GM
Sbjct: 140 GTDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSESQFVNMMNAEAQKLGM 199

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
             T + + +G+ D    TTA D A L   L ++FP YY  FS+++F Y N    N N+LL
Sbjct: 200 SGTHFADVNGMPDPQHYTTAGDLAKLSARLIRDFPDYYNIFSVKEFSYNNIRQPNRNRLL 259

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTS----LRYKDDP---IVAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++ S    L   D     +V+V+MG     +R Q +++++
Sbjct: 260 WIDPTVDGLKTGHTQAAGYCLIASAKRALPGADGGTRRLVSVMMGETKESDRVQDSMKML 319


>gi|83943052|ref|ZP_00955512.1| D-alanyl-D-alanine carboxypeptidase [Sulfitobacter sp. EE-36]
 gi|83954241|ref|ZP_00962961.1| D-alanyl-D-alanine carboxypeptidase [Sulfitobacter sp. NAS-14.1]
 gi|83841278|gb|EAP80448.1| D-alanyl-D-alanine carboxypeptidase [Sulfitobacter sp. NAS-14.1]
 gi|83846060|gb|EAP83937.1| D-alanyl-D-alanine carboxypeptidase [Sulfitobacter sp. EE-36]
          Length = 389

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/265 (32%), Positives = 137/265 (51%), Gaps = 21/265 (7%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-----KQDEPRYPASLTKMMTLYI 88
           I  L + + + A E  A+  Y   V+D    Q TG        DEP  PAS++K+MTLY+
Sbjct: 9   IATLLLALPAQAFETQARAAY---VVD----QTTGTVLLTKNADEPLPPASMSKLMTLYM 61

Query: 89  IFEYLQSKK----LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
            FE ++  K    L L  ++PVS+ A +   S ++L        E  +  +I  S ND  
Sbjct: 62  AFEAIERGKSNGGLDLTEELPVSQHAMSYGGSTMFLDTTDRVKVEDLLRGIIVLSGNDAC 121

Query: 145 TAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
               E +S  GSE  FA LM+ +A+++GM N+ + N++G        + RD  +L   L 
Sbjct: 122 AVIAEALSPDGSEAGFARLMTQRAQQMGMTNSTFANSNGWPAAGHRMSLRDLGLLATRLI 181

Query: 203 KNFPQYYKYFSIRKFRYRNRII---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           +++PQYY  FS R+F +  R     TN N LL      DG+KTG+T  +G+ +V S +  
Sbjct: 182 EDYPQYYPMFSQREFLFDGRAPQNKTNRNPLLGLGIGADGLKTGHTEEAGYGLVGSAKQG 241

Query: 260 DDPIVAVVMGMPTSQERDQKALELI 284
           D  +V V+ G+ ++  R Q++  ++
Sbjct: 242 DRRVVFVLSGLESAAARAQESESIV 266


>gi|319778852|ref|YP_004129765.1| D-alanyl-D-alanine carboxypeptidase [Taylorella equigenitalis MCE9]
 gi|317108876|gb|ADU91622.1| D-alanyl-D-alanine carboxypeptidase [Taylorella equigenitalis MCE9]
          Length = 430

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 132/231 (57%), Gaps = 1/231 (0%)

Query: 55  SSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S I+ID+   Q+   +  D    PASLTK+MT  ++FE ++ K++ L+ ++ VS+ A   
Sbjct: 88  SWIIIDMESGQIIAQYNPDLKVAPASLTKLMTSSLVFEAIKDKRISLDQEVIVSERAWKT 147

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S++++      T  + +  +I +S ND S    E +SG+   F   M++  +   M N
Sbjct: 148 GGSRMFINVNKKVTIGELLQGMIVQSGNDASIQLAESVSGTIDAFVKEMNDSLQAFHMLN 207

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           + + + +GL   N  TTARD ++L   +  +FPQ+Y YFS  +F Y     TN N LL K
Sbjct: 208 SHFADPTGLPSPNTYTTARDLSVLAQHIIVDFPQFYHYFSQPEFTYNKIRQTNTNGLLGK 267

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +  +DG+KTG+T  +G+ +VTS++  +  I+ ++MG  + + R+Q + +LI
Sbjct: 268 IEGLDGLKTGHTDEAGYCLVTSVKRNNRRILTILMGADSIKHREQLSKQLI 318


>gi|153826135|ref|ZP_01978802.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MZO-2]
 gi|149740158|gb|EDM54317.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MZO-2]
          Length = 391

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 90/267 (33%), Positives = 145/267 (54%), Gaps = 9/267 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           I  +I L G   F S I+   A ++ AK     +++D +  ++   K+ D    PASLTK
Sbjct: 14  ITLSITLSGTA-FASPIVTPDAPQIAAK---GYVLMDYHSGKVLAEKEMDTKLSPASLTK 69

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRS 139
           MMT Y+I + ++   + LN  + +SK A  +N    SK++++  T          +I +S
Sbjct: 70  MMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQS 129

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND   A  E ++G+E  F  LM+  A  +GM+N+ + N+ GL D N  +T  D A+LG 
Sbjct: 130 GNDACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQ 189

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRY 258
            L ++ P+ Y  +S +KF Y      N N LL +K  N+DGIKTG+T  +G+N+V+S   
Sbjct: 190 ALIRDVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATE 249

Query: 259 KDDPIVAVVMGMPTSQERDQKALELIT 285
            +  +VAVVMG      R  ++ +L++
Sbjct: 250 GNMRLVAVVMGTDNENARKAESKKLLS 276


>gi|229525558|ref|ZP_04414963.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae bv. albensis
           VL426]
 gi|229339139|gb|EEO04156.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae bv. albensis
           VL426]
          Length = 391

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/255 (33%), Positives = 140/255 (54%), Gaps = 8/255 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           F S I+   A ++ AK     +++D +  ++   K+ D    PASLTKMMT Y+I + ++
Sbjct: 25  FASPIVTPDAPQIAAK---GYVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVIGQEVK 81

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              + LN  + +SK A  +N    SK++++  T          +I +S ND   A  E +
Sbjct: 82  RGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHV 141

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +G+E  F  LM+  A  +GM+N+ + N+ GL D N  +T  D A+LG  L ++ P+ Y  
Sbjct: 142 AGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVPEEYAI 201

Query: 212 FSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL +K  N+DGIKTG+T  +G+N+V+S    +  +VAVVMG 
Sbjct: 202 YSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGT 261

Query: 271 PTSQERDQKALELIT 285
                R  ++ +L++
Sbjct: 262 DNENARKAESKKLLS 276


>gi|121591022|ref|ZP_01678339.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 2740-80]
 gi|121547132|gb|EAX57264.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 2740-80]
          Length = 386

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/255 (33%), Positives = 140/255 (54%), Gaps = 8/255 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           F S I+   A ++ AK     +++D +  ++   K+ D    PASLTKMMT Y+I + ++
Sbjct: 25  FASPIVTPDAPQIAAK---GYVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVIGQEVK 81

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              + LN  + +SK A  +N    SK++++  T          +I +S ND   A  E +
Sbjct: 82  RGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHV 141

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +G+E  F  LM+  A  +GM+N+ + N+ GL D N  +T  D A+LG  L ++ P+ Y  
Sbjct: 142 AGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVPEEYAI 201

Query: 212 FSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL +K  N+DGIKTG+T  +G+N+V+S    +  +VAVVMG 
Sbjct: 202 YSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGT 261

Query: 271 PTSQERDQKALELIT 285
                R  ++ +L++
Sbjct: 262 DNENARKAESKKLLS 276


>gi|114705796|ref|ZP_01438699.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506]
 gi|114538642|gb|EAU41763.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506]
          Length = 356

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 129/239 (53%), Gaps = 6/239 (2%)

Query: 49  HAKPKYSSIVIDVNKNQMTGFKQDE--PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
           HA P   ++V+D     +  F ++   P YPAS TK+M+ Y+ FE L++ ++ L+T + +
Sbjct: 26  HATP---ALVVDAGTRAVL-FAEEAGHPWYPASTTKLMSAYVTFEALRAGEVSLDTPVTI 81

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
           SK A T+      L        E  + A++  SAN+VS +  E ++GS + FA  M+  A
Sbjct: 82  SKRAMTEASLHAGLSAGRAMRLEDALFAMVVGSANEVSISLAERVAGSVEAFAARMNATA 141

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
            ++GM  T + N +GL   +Q TTARD A+LG+   ++FP+Y + F+        + +  
Sbjct: 142 ARLGMTATRFDNPNGLFAASQHTTARDLALLGLAATRDFPEYRELFTTSIVVIDGKKLET 201

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N LL       G+KTG+   SG N+V         I+ V++G  T +ER ++A +L++
Sbjct: 202 ENVLLTDFPGTLGLKTGFLCASGRNLVAMAERDGRRILVVLLGATTGRERAERAAKLMS 260


>gi|84394380|ref|ZP_00993099.1| D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus 12B01]
 gi|84374982|gb|EAP91910.1| D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus 12B01]
          Length = 393

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 79/213 (37%), Positives = 124/213 (58%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I + L+   ++LN  + +S+ A  +N    SK++++  T    E+   
Sbjct: 66  PASLTKMMTSYVIGQELERGNINLNDDVVISENAWAKNFPDSSKMFIEVGTTVKVEELNR 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND + A  E I+GSE  F  LM+  A  IGM++T + N  GL + N  +T  D
Sbjct: 126 GIIIQSGNDATVAMAEHIAGSEDAFVDLMNAWASSIGMKDTHFANVHGLDNPNLYSTPYD 185

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A+LG  L ++ P  Y+ +S +KF Y      N N LL +K  N+DGIKTG+T  +G+++
Sbjct: 186 MALLGQALIRDVPDEYRIYSEKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSKAGYSL 245

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           V+S       +VAVVMG   +  R  ++ +L++
Sbjct: 246 VSSATEGKMRLVAVVMGTKNANARKTESKKLLS 278


>gi|153213833|ref|ZP_01949039.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 1587]
 gi|229510878|ref|ZP_04400357.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33]
 gi|229517999|ref|ZP_04407443.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC9]
 gi|229608471|ref|YP_002879119.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MJ-1236]
 gi|254848079|ref|ZP_05237429.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MO10]
 gi|124115667|gb|EAY34487.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 1587]
 gi|229344714|gb|EEO09688.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC9]
 gi|229350843|gb|EEO15784.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33]
 gi|229371126|gb|ACQ61549.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MJ-1236]
 gi|254843784|gb|EET22198.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MO10]
          Length = 391

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/255 (33%), Positives = 140/255 (54%), Gaps = 8/255 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           F S I+   A ++ AK     +++D +  ++   K+ D    PASLTKMMT Y+I + ++
Sbjct: 25  FASPIVTPDAPQIAAK---GYVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVIGQEVK 81

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              + LN  + +SK A  +N    SK++++  T          +I +S ND   A  E +
Sbjct: 82  RGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHV 141

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +G+E  F  LM+  A  +GM+N+ + N+ GL D N  +T  D A+LG  L ++ P+ Y  
Sbjct: 142 AGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVPEEYAI 201

Query: 212 FSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL +K  N+DGIKTG+T  +G+N+V+S    +  +VAVVMG 
Sbjct: 202 YSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGT 261

Query: 271 PTSQERDQKALELIT 285
                R  ++ +L++
Sbjct: 262 DNENARKAESKKLLS 276


>gi|121728034|ref|ZP_01681072.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V52]
 gi|147675663|ref|YP_001216421.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395]
 gi|229512959|ref|ZP_04402425.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TMA 21]
 gi|229523260|ref|ZP_04412667.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TM 11079-80]
 gi|229529956|ref|ZP_04419346.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 12129(1)]
 gi|254225715|ref|ZP_04919321.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V51]
 gi|254285618|ref|ZP_04960582.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae AM-19226]
 gi|121629663|gb|EAX62083.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V52]
 gi|125621723|gb|EAZ50051.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V51]
 gi|146317546|gb|ABQ22085.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395]
 gi|150424480|gb|EDN16417.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae AM-19226]
 gi|227012764|gb|ACP08974.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395]
 gi|229333730|gb|EEN99216.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 12129(1)]
 gi|229339623|gb|EEO04638.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TM 11079-80]
 gi|229349852|gb|EEO14806.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TMA 21]
 gi|327483673|gb|AEA78080.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae LMA3894-4]
          Length = 391

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/255 (33%), Positives = 140/255 (54%), Gaps = 8/255 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           F S I+   A ++ AK     +++D +  ++   K+ D    PASLTKMMT Y+I + ++
Sbjct: 25  FASPIVTPDAPQIAAK---GYVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVIGQEVK 81

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              + LN  + +SK A  +N    SK++++  T          +I +S ND   A  E +
Sbjct: 82  RGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHV 141

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +G+E  F  LM+  A  +GM+N+ + N+ GL D N  +T  D A+LG  L ++ P+ Y  
Sbjct: 142 AGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVPEEYAI 201

Query: 212 FSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL +K  N+DGIKTG+T  +G+N+V+S    +  +VAVVMG 
Sbjct: 202 YSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGT 261

Query: 271 PTSQERDQKALELIT 285
                R  ++ +L++
Sbjct: 262 DNENARKAESKKLLS 276


>gi|297581327|ref|ZP_06943251.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC385]
 gi|297534643|gb|EFH73480.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC385]
          Length = 391

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/255 (33%), Positives = 140/255 (54%), Gaps = 8/255 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           F S I+   A ++ AK     +++D +  ++   K+ D    PASLTKMMT Y+I + ++
Sbjct: 25  FASPIVTPDAPQIAAK---GYVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVIGQEVK 81

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              + LN  + +SK A  +N    SK++++  T          +I +S ND   A  E +
Sbjct: 82  RGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHV 141

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +G+E  F  LM+  A  +GM+N+ + N+ GL D N  +T  D A+LG  L ++ P+ Y  
Sbjct: 142 AGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVPEEYAI 201

Query: 212 FSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL +K  N+DGIKTG+T  +G+N+V+S    +  +VAVVMG 
Sbjct: 202 YSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGT 261

Query: 271 PTSQERDQKALELIT 285
                R  ++ +L++
Sbjct: 262 DNENARKAESKKLLS 276


>gi|254181990|ref|ZP_04888587.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei
           1655]
 gi|184212528|gb|EDU09571.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei
           1655]
          Length = 437

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 137/240 (57%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D + NQ +     DE   PASLTK+MT Y++FE L +KK+ +   +  S+     
Sbjct: 82  SWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRV 141

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+ +A+++GM
Sbjct: 142 GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGM 201

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T + + +G+ D N  TTA D A L   L +++P YY  FS+++F Y N    N N+LL
Sbjct: 202 KSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLL 261

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTS----LRYKDDP---IVAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++ S    L    D    +V V+MG     +R Q +++++
Sbjct: 262 WLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKML 321


>gi|67642413|ref|ZP_00441170.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei GB8 horse 4]
 gi|121598771|ref|YP_991575.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei SAVP1]
 gi|124385285|ref|YP_001027352.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei NCTC 10229]
 gi|126449591|ref|YP_001082709.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei NCTC 10247]
 gi|126454122|ref|YP_001064741.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei
           1106a]
 gi|167003222|ref|ZP_02269012.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei PRL-20]
 gi|242314349|ref|ZP_04813365.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           1106b]
 gi|254176979|ref|ZP_04883636.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei ATCC 10399]
 gi|254202020|ref|ZP_04908384.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei FMH]
 gi|254207352|ref|ZP_04913703.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei JHU]
 gi|254357610|ref|ZP_04973884.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei 2002721280]
 gi|121227581|gb|ABM50099.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei SAVP1]
 gi|124293305|gb|ABN02574.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia mallei NCTC
           10229]
 gi|126227764|gb|ABN91304.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei
           1106a]
 gi|126242461|gb|ABO05554.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia mallei NCTC
           10247]
 gi|147747914|gb|EDK54990.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei FMH]
 gi|147752894|gb|EDK59960.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei JHU]
 gi|148026674|gb|EDK84759.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei 2002721280]
 gi|160698020|gb|EDP87990.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei ATCC 10399]
 gi|238523562|gb|EEP87000.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei GB8 horse 4]
 gi|242137588|gb|EES23990.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           1106b]
 gi|243061219|gb|EES43405.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei PRL-20]
          Length = 437

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 137/240 (57%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D + NQ +     DE   PASLTK+MT Y++FE L +KK+ +   +  S+     
Sbjct: 82  SWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRV 141

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+ +A+++GM
Sbjct: 142 GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGM 201

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T + + +G+ D N  TTA D A L   L +++P YY  FS+++F Y N    N N+LL
Sbjct: 202 KSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLL 261

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTS----LRYKDDP---IVAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++ S    L    D    +V V+MG     +R Q +++++
Sbjct: 262 WLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKML 321


>gi|261364923|ref|ZP_05977806.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria mucosa ATCC
           25996]
 gi|288566708|gb|EFC88268.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria mucosa ATCC
           25996]
          Length = 417

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 131/235 (55%), Gaps = 2/235 (0%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           IV D++ +Q+      D    PASLTKMMT Y+ F+ L++  L  +  + VS        
Sbjct: 67  IVTDLHSHQVLASSNIDTQIEPASLTKMMTAYLTFKALENGTLRADQMLTVSDAGWKIEG 126

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNT 174
           S+++L  K   +    I  +I +S ND +T   E + G S   F   M+ +AK++GM  T
Sbjct: 127 SRMFLIPKVPASVSDLIKGMIVQSGNDAATTLAEAMGGGSVDVFVQQMNEEAKRLGMTKT 186

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            +KN +GL  +  ++T  D AIL   L  ++P+YY  FSI+ F+Y N    N N LL + 
Sbjct: 187 HFKNPTGLAAEGHVSTVGDLAILSAALIHDYPKYYPVFSIKSFKYNNVEQPNRNLLLYRD 246

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
            N+DG+KTG+T ++G+N+  S +     IV++V+G  +++ R  ++ +L+   L+
Sbjct: 247 SNVDGLKTGHTESAGYNLAASSKRNGRRIVSIVVGTDSTEARASESGKLLNWALQ 301


>gi|304395655|ref|ZP_07377538.1| Beta-lactamase [Pantoea sp. aB]
 gi|304356949|gb|EFM21313.1| Beta-lactamase [Pantoea sp. aB]
          Length = 420

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 85/272 (31%), Positives = 150/272 (55%), Gaps = 17/272 (6%)

Query: 31  MGKILFLSIIMISMASELHAK------PKYSS---IVIDVNKNQMTGFKQ-DEPRYPASL 80
           +G ++ +S+   ++A +++ K      P   +   ++ID N  ++   K  D  R PASL
Sbjct: 32  VGSLIAISLSHAAIADDVNLKTMIPGVPDIDAEAYVLIDYNSGKVLAEKNADARRDPASL 91

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILA 134
           TKMMT Y+I + +++ K+H +  + V   A AT NP     S ++LK        Q    
Sbjct: 92  TKMMTSYVIGQAVKAGKIHQDDLVTVGPDAWATGNPVFKGSSLMFLKPGDRVPVSQLTRG 151

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           ++ +S ND   A  ++++GS+  F  LM+N  K +G+QNT +    GL  + Q ++ARD 
Sbjct: 152 IVLQSGNDACVAMADYVAGSQDAFVNLMNNYVKALGLQNTHFGTVHGLDAEGQYSSARDM 211

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIV 253
           A++G  L ++ P+ Y  +  ++F + N    N N LL   + N+DGIKTG+T ++G+N+V
Sbjct: 212 ALIGQALIRDVPEEYAVYKEKEFTFNNIRQMNRNGLLWDTNLNVDGIKTGHTNSAGYNLV 271

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            S       +++ VMG  T + R+ ++ +L+T
Sbjct: 272 ASATEGQMRLISAVMGGHTYKGRETESKKLLT 303


>gi|167917341|ref|ZP_02504432.1| penicillin-binding protein 6 [Burkholderia pseudomallei BCC215]
          Length = 377

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 137/240 (57%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D + NQ +     DE   PASLTK+MT Y++FE L +KK+ +   +  S+     
Sbjct: 22  SWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRV 81

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+ +A+++GM
Sbjct: 82  GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGM 141

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T + + +G+ D N  TTA D A L   L +++P YY  FS+++F Y N    N N+LL
Sbjct: 142 KSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLL 201

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTS----LRYKDDP---IVAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++ S    L    D    +V V+MG     +R Q +++++
Sbjct: 202 WLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKML 261


>gi|167717860|ref|ZP_02401096.1| penicillin-binding protein 6 [Burkholderia pseudomallei DM98]
 gi|167892592|ref|ZP_02479994.1| penicillin-binding protein 6 [Burkholderia pseudomallei 7894]
          Length = 378

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 137/240 (57%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D + NQ +     DE   PASLTK+MT Y++FE L +KK+ +   +  S+     
Sbjct: 23  SWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRV 82

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+ +A+++GM
Sbjct: 83  GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGM 142

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T + + +G+ D N  TTA D A L   L +++P YY  FS+++F Y N    N N+LL
Sbjct: 143 KSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLL 202

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTS----LRYKDDP---IVAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++ S    L    D    +V V+MG     +R Q +++++
Sbjct: 203 WLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKML 262


>gi|127513867|ref|YP_001095064.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella loihica PV-4]
 gi|126639162|gb|ABO24805.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella loihica PV-4]
          Length = 390

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 82/241 (34%), Positives = 139/241 (57%), Gaps = 8/241 (3%)

Query: 52  PKYSS---IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS 107
           PK ++   I++D N  Q+   +   E   PASLTKMMT Y+I   ++   +    ++ +S
Sbjct: 33  PKVAAKAFILMDYNSGQIIAEENAYESLNPASLTKMMTSYVIGHEIKVGNISPQDKVTIS 92

Query: 108 KTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
           K A ++N    SK++++     + E+    +I +S ND   A  E I+G+E  F  LM++
Sbjct: 93  KNAWSKNFPDSSKMFIEVGKQVSVEELNRGIIIQSGNDACVAMAEHIAGTEDGFVDLMNS 152

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII 224
            AK++GM+++ ++N+ GL  +N  TTA D A+LG  L ++ P+ Y+ +S + F Y     
Sbjct: 153 WAKQLGMRDSYFENSHGLDSENHKTTAYDMALLGAALIRDVPEEYRVYSEKSFTYNGIKQ 212

Query: 225 TNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            N N LL +K  N+DGIKTG+T  +G+N+VTS       +V+VV+G  +   R  ++ +L
Sbjct: 213 YNRNGLLWDKSLNVDGIKTGHTSGAGYNLVTSATKDGMRLVSVVLGTASESARKAESKKL 272

Query: 284 I 284
           +
Sbjct: 273 L 273


>gi|53724944|ref|YP_101907.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei ATCC 23344]
 gi|52428367|gb|AAU48960.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei ATCC 23344]
          Length = 403

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 137/240 (57%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D + NQ +     DE   PASLTK+MT Y++FE L +KK+ +   +  S+     
Sbjct: 48  SWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRV 107

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+ +A+++GM
Sbjct: 108 GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGM 167

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T + + +G+ D N  TTA D A L   L +++P YY  FS+++F Y N    N N+LL
Sbjct: 168 KSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLL 227

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTS----LRYKDDP---IVAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++ S    L    D    +V V+MG     +R Q +++++
Sbjct: 228 WLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKML 287


>gi|239998641|ref|ZP_04718565.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae 35/02]
 gi|240013763|ref|ZP_04720676.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae DGI18]
 gi|240115295|ref|ZP_04729357.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae PID18]
 gi|240120831|ref|ZP_04733793.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae PID24-1]
 gi|240125386|ref|ZP_04738272.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae SK-92-679]
 gi|240127841|ref|ZP_04740502.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae SK-93-1035]
 gi|260440888|ref|ZP_05794704.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae DGI2]
 gi|268594495|ref|ZP_06128662.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae 35/02]
 gi|268600975|ref|ZP_06135142.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID18]
 gi|268683987|ref|ZP_06150849.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268686238|ref|ZP_06153100.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268547884|gb|EEZ43302.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae 35/02]
 gi|268585106|gb|EEZ49782.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID18]
 gi|268624271|gb|EEZ56671.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268626522|gb|EEZ58922.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 389

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 141/252 (55%), Gaps = 10/252 (3%)

Query: 48  LHAKPKYSS--------IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +HA P   +        IVID+   Q    K  + P  PA+LT++MT Y++F+ ++S  +
Sbjct: 32  VHAAPTLQTPETLTAAHIVIDLQSRQTLSAKNTNTPVEPAALTQLMTAYLVFKNMKSGNI 91

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKK 157
                + + ++A     S+++++     +T++ +  +I   AND +    + +  GS + 
Sbjct: 92  QSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALCANDAALTLADRLGNGSIEN 151

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A+L   L ++FP+YY  FSI+ F
Sbjct: 152 FVQQMNKEARRLGMKNTVFKNPTGLGREGQVSTAKDLALLSEALMRDFPEYYPLFSIKSF 211

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           ++ N    N N LL + +N++G+K G+T + G+N+  S       I+ + +G  +++ R 
Sbjct: 212 KFENIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRA 271

Query: 278 QKALELITSFLE 289
               +L+   L+
Sbjct: 272 SDNSKLLNRALQ 283


>gi|167909308|ref|ZP_02496399.1| penicillin-binding protein 6 [Burkholderia pseudomallei 112]
          Length = 379

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 137/240 (57%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D + NQ +     DE   PASLTK+MT Y++FE L +KK+ +   +  S+     
Sbjct: 24  SWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRV 83

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+ +A+++GM
Sbjct: 84  GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGM 143

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T + + +G+ D N  TTA D A L   L +++P YY  FS+++F Y N    N N+LL
Sbjct: 144 KSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLL 203

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTS----LRYKDDP---IVAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++ S    L    D    +V V+MG     +R Q +++++
Sbjct: 204 WLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKML 263


>gi|255066778|ref|ZP_05318633.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria sicca ATCC
           29256]
 gi|255048853|gb|EET44317.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria sicca ATCC
           29256]
          Length = 417

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 131/235 (55%), Gaps = 2/235 (0%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           IV D++ +Q+      D    PASLTKMMT Y+ F+ L++  L  +  + VS        
Sbjct: 67  IVTDLHSHQVLASNNIDTQIEPASLTKMMTAYLTFKALENGTLRADQMLTVSDAGWKIEG 126

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNT 174
           S+++L  K   +    I  +I +S ND +T   E + G S   F   M+ +AK++GM  T
Sbjct: 127 SRMFLIPKVPASVSDLIKGMIVQSGNDAATTLAEAMGGGSVDVFVQQMNEEAKRLGMTKT 186

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            +KN +GL  +  ++T  D AIL   L  ++P+YY  FSI+ F+Y N    N N LL + 
Sbjct: 187 HFKNPTGLAAEGHVSTVGDLAILSAALIHDYPKYYPVFSIKSFKYNNVEQPNRNLLLYRD 246

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
            N+DG+KTG+T ++G+N+  S +     IV++V+G  +++ R  ++ +L+   L+
Sbjct: 247 SNVDGLKTGHTESAGYNLAASSKRNGRRIVSIVVGTDSTEARASESGKLLNWALQ 301


>gi|114762661|ref|ZP_01442095.1| D-alanyl-D-alanine carboxypeptidase [Pelagibaca bermudensis
           HTCC2601]
 gi|114544571|gb|EAU47577.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius sp. HTCC2601]
          Length = 391

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 129/235 (54%), Gaps = 8/235 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   PAS++K+MTLY+ FE ++  +L L+ ++PVS+ A +   S ++L        E  
Sbjct: 51  DEALPPASMSKLMTLYMAFEAVRDGRLQLDERLPVSQHAMSYGGSTMFLNTTDRVAVEDL 110

Query: 132 ILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           +  +I  S ND      E +S  G+E  FA LM+ +A+++GM N+ ++NASG    N   
Sbjct: 111 LRGIIVLSGNDACAVIAEALSPNGTEAGFAELMTRRAQQLGMTNSTFENASGWPAPNHRM 170

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI---ITNHNKLLNKMHNIDGIKTGYTR 246
           + RD  +L   + ++FP++Y  F+ R+F +  R    + N N LL      DG+KTG+T+
Sbjct: 171 SVRDLTLLATRIIEDFPEFYPIFAERRFEFDGRAPSNVNNRNPLLRLDIGADGLKTGHTQ 230

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT-SF--LEKKTLKHQQT 298
            +G+ +V S       ++  + G+ + + R ++A  ++  +F    ++TL  Q T
Sbjct: 231 EAGYGLVGSAEQDGRRVIFTISGLDSERARAEEAESIVNWAFRQFAERTLVEQGT 285


>gi|261343559|ref|ZP_05971204.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rustigianii
           DSM 4541]
 gi|282568708|gb|EFB74243.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rustigianii
           DSM 4541]
          Length = 403

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 84/237 (35%), Positives = 138/237 (58%), Gaps = 8/237 (3%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           I+ID N  + +     D+ R PASLTKMMT Y+I + ++S K+  N  + V + A AT N
Sbjct: 50  ILIDYNSGKVLAESNADQRRDPASLTKMMTSYVIGQAIKSGKIGANDMVTVGEDAWATGN 109

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S ++LK     +  Q    +  +S ND   A  + ++G +  F  LM+N   K+
Sbjct: 110 PIFKGSSLMFLKPGDRVSVSQLTRGINLQSGNDACVAMADHVAGDQSSFVNLMNNYVSKL 169

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+QNT ++   GL  + Q ++ARD A++G  L ++ P+ Y+ +  ++F + N   TN N 
Sbjct: 170 GLQNTHFQTVHGLDAEGQYSSARDMALIGQALIRDVPEEYEIYKEKEFTFNNIRQTNRNG 229

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL +K   +DGIKTG+T  +G+N+V S +  D  +++VVMG  +S+ RD ++ +L+T
Sbjct: 230 LLWDKSLAVDGIKTGHTDAAGYNLVASAKDGDMRLISVVMGGKSSKGRDAESKKLLT 286


>gi|144899826|emb|CAM76690.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 387

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 124/217 (57%), Gaps = 4/217 (1%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKLYLKEKTYFT 127
           DE   P+S++K+MT Y++FE L+     ++ Q+PVS+TA  +      S ++L   +   
Sbjct: 54  DELMVPSSMSKLMTAYLVFEKLKEGSWKMDDQLPVSETAWKRHFKSGGSLMFLPVGSSAK 113

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
               I  +I +S ND  +   E  SG+E+ FA   + KA+ +GM +T  +NASG  D   
Sbjct: 114 VGDLIRGVIIQSGNDACSVLAEAHSGTEEAFAEEATRKARDLGMLHTTLRNASGWPDPEH 173

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRN 247
           +TTARD +IL   L  +FP+Y+  +S R+F +      N N LL  +   DG+KTG+T  
Sbjct: 174 LTTARDLSILARRLISDFPEYFPIYSEREFVFNGIRQGNRNPLLYGVSGADGLKTGHTEA 233

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +G+ +V +++  +  I+ V+ G+ + +ER +++  L+
Sbjct: 234 AGYGLVGTVKRGERRIIMVINGLKSMKERSEESARLM 270


>gi|258621965|ref|ZP_05716994.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM573]
 gi|258585718|gb|EEW10438.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM573]
          Length = 391

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 85/255 (33%), Positives = 141/255 (55%), Gaps = 8/255 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
           F S I++  A ++ AK     +++D +  ++   K+   +  PASLTKMMT Y+I + ++
Sbjct: 25  FASPIVVPDAPQIAAK---GYVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQEVK 81

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              + LN  + +SK A  +N    SK++++  T          +I +S ND   A  E +
Sbjct: 82  RGNISLNDDVVISKNAWAKNFPDSSKMFIEVGTTVKVSDLNRGIIIQSGNDACVAMAEHV 141

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  F  LM+  A  +GM+++ + N+ GL D N  +T  D A+LG  L ++ P+ Y  
Sbjct: 142 AGSEDAFVDLMNAWASSLGMKDSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVPEEYAI 201

Query: 212 FSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL +K  N+DGIKTG+T  +G+N+V+S    +  +VAVVMG 
Sbjct: 202 YSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGT 261

Query: 271 PTSQERDQKALELIT 285
                R  ++ +L++
Sbjct: 262 DNENARKAESKKLLS 276


>gi|254456113|ref|ZP_05069542.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter
           sp. HTCC7211]
 gi|207083115|gb|EDZ60541.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter
           sp. HTCC7211]
          Length = 383

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 82/241 (34%), Positives = 142/241 (58%), Gaps = 11/241 (4%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR--YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-- 110
           ++I++D + +++  +++D  R  +PAS+TK+MT  I F+ +++ +L L+ +  VS+ A  
Sbjct: 29  TAILLDYHSDEIL-YEKDPDRKIFPASMTKIMTSIIAFDLIKNGELSLDDKFIVSENAWR 87

Query: 111 -ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            +    S +++      + E  +  +I  S ND   A  E I+G+E +FAILM+ KAK+I
Sbjct: 88  LSESGYSSMFIMVGDQISVENLLKGIIISSGNDACVALAEGIAGTEDEFAILMTEKAKEI 147

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF---RYRNRIIT- 225
           GM+NT + N+SG++  + ++T RD  I+   L KN+P YYKYF  +KF   R     IT 
Sbjct: 148 GMENTNFSNSSGINSPDNLSTVRDIMIMSKYLIKNYPDYYKYFKEKKFTWDRTGGDPITQ 207

Query: 226 -NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            N N LL K  + DGIKTGY     +++ +S+      ++AV  G  +   R +++++L+
Sbjct: 208 GNRNPLLYKNLDADGIKTGYLSYEKYSLASSINRNGRRLIAVGSGFNSKNSRSRESIKLL 267

Query: 285 T 285
           T
Sbjct: 268 T 268


>gi|240950037|ref|ZP_04754345.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus
           minor NM305]
 gi|240295515|gb|EER46258.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus
           minor NM305]
          Length = 392

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 155/270 (57%), Gaps = 13/270 (4%)

Query: 45  ASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A +L+A+   + I++D N    +     D+ +YPASLTKMMT Y++ + ++  K+  +  
Sbjct: 32  APQLNAQ---TYILMDYNSGAVLASLNPDQRQYPASLTKMMTAYVVGDAIKQGKVRNSDM 88

Query: 104 IPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
           + V++ +  Q     S ++L   T  +    +  LI  S ND + A  E  SGS++ F  
Sbjct: 89  VTVTENSWAQKFPGSSLMFLDLNTQVSVGDLMKGLIIVSGNDAAVALAEHTSGSQQAFID 148

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
            M+  A++ G++NT +    GL D NQ ++ARD AI+G  + ++ P+ YK ++ ++F+Y 
Sbjct: 149 QMNKYAQQFGLKNTYFTTVHGLDDPNQFSSARDMAIIGTHVIRDQPEEYKIYAEKEFQYN 208

Query: 221 -NRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
             +   N N LL +K  N+DG+KTG+T  +G+N+V S    +  +++VVMG+PT + R+ 
Sbjct: 209 IKKPQPNRNGLLWDKTMNVDGMKTGHTDKAGYNLVASATNSNTRLISVVMGVPTYKGREV 268

Query: 279 KALELI----TSFLEKKTLKHQQTHRKDNL 304
           ++ +L+     +F   K+L   Q  +++++
Sbjct: 269 ESKKLLQWGFANFETVKSLPAGQAIKEESV 298


>gi|317121887|ref|YP_004101890.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591867|gb|ADU51163.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           marianensis DSM 12885]
          Length = 438

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 125/224 (55%), Gaps = 9/224 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           S++++D    Q +     DE   PASL K+MTL ++F  L+  +L L+ Q+PVS+ A   
Sbjct: 82  SAVLVDATTGQELYAQNADELIPPASLAKIMTLDLVFHALEEGRLALDQQVPVSEAAWRL 141

Query: 111 ----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
                   PS ++L+       E  I  +   S ND ST   E ++GSE+ F  LM+  A
Sbjct: 142 SVQAGLGGPSAMFLEVGERVRIEDLIRGVAVASGNDASTVLAEAVAGSEEAFVRLMNQHA 201

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII-T 225
            +IGM+N+++ N+ GL    Q  TARD A L + + +  P   +Y S++ F +++     
Sbjct: 202 AEIGMKNSVFSNSHGLPGGQQHVTARDMARLALHVLEAHPDILRYTSLKYFEWKDFAPQP 261

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           N+N+L+ +   +DG+KTG+   +G+++V + R  D  +V+VV+G
Sbjct: 262 NYNRLIFRDPRVDGLKTGHLSEAGYHLVATARDGDRRLVSVVLG 305


>gi|258625415|ref|ZP_05720309.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM603]
 gi|258582326|gb|EEW07181.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM603]
          Length = 391

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 85/255 (33%), Positives = 141/255 (55%), Gaps = 8/255 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
           F S I++  A ++ AK     +++D +  ++   K+   +  PASLTKMMT Y+I + ++
Sbjct: 25  FASPIVVPDAPQIAAK---GYVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQEVK 81

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              + LN  + +SK A  +N    SK++++  T          +I +S ND   A  E +
Sbjct: 82  RGNISLNDDVVISKNAWAKNFPDSSKMFIEVGTTVKVSDLNRGIIIQSGNDACVAMAEHV 141

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  F  LM+  A  +GM+++ + N+ GL D N  +T  D A+LG  L ++ P+ Y  
Sbjct: 142 AGSEDAFVDLMNAWASSLGMKDSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVPEEYAI 201

Query: 212 FSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL +K  N+DGIKTG+T  +G+N+V+S    +  +VAVVMG 
Sbjct: 202 YSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGT 261

Query: 271 PTSQERDQKALELIT 285
                R  ++ +L++
Sbjct: 262 DNENARKAESKKLLS 276


>gi|167844088|ref|ZP_02469596.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei B7210]
          Length = 376

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 137/240 (57%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D + NQ +     DE   PASLTK+MT Y++FE L +KK+ +   +  S+     
Sbjct: 21  SWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRV 80

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+ +A+++GM
Sbjct: 81  GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGM 140

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T + + +G+ D N  TTA D A L   L +++P YY  FS+++F Y N    N N+LL
Sbjct: 141 KSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLL 200

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTS----LRYKDDP---IVAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++ S    L    D    +V V+MG     +R Q +++++
Sbjct: 201 WLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKML 260


>gi|152981033|ref|YP_001354938.1| D-alanyl-D-alanine carboxypeptidase [Janthinobacterium sp.
           Marseille]
 gi|151281110|gb|ABR89520.1| D-alanyl-D-alanine carboxypeptidase (peptidase family s11)
           [Janthinobacterium sp. Marseille]
          Length = 382

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 144/248 (58%), Gaps = 8/248 (3%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S +++D   NQ+    + + R  PASLTK+MT Y+ F  +Q KKL LN  I +S  A   
Sbjct: 32  SWLLLDATSNQVLASNEPDMRIEPASLTKLMTAYVAFTAIQDKKLDLNQMITISTNAWKV 91

Query: 114 NPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +PS  K++++ +        +  LI +S ND + A  E ++G+E  F  LM+ +A+++GM
Sbjct: 92  DPSSSKMFIEPRVPVKVNDLLYGLIVQSGNDAAVAIAEAVAGTEDAFVALMNREAERMGM 151

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T + N  GL   +  +TARD ++L   L  + P++YK +S +++ Y N    N N+LL
Sbjct: 152 KSTHFANPHGLPSASNYSTARDLSVLASHLINDHPEFYKIYSTKEYTYNNIKQPNRNRLL 211

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP----IVAVVMGMPTSQERDQKALELIT-S 286
                +DG+KTGYT+ +G+ ++++ +  +      +++VV+G  + Q R Q++ +L+   
Sbjct: 212 WLDPTVDGMKTGYTQGAGYCLISTAKRPNGTGERRLISVVLGTISDQARAQESQKLLNWG 271

Query: 287 FLEKKTLK 294
           FL   T+K
Sbjct: 272 FLNFDTVK 279


>gi|194098190|ref|YP_002001238.1| Penicillin-binding protein [Neisseria gonorrhoeae NCCP11945]
 gi|291044211|ref|ZP_06569920.1| penicillin-binding protein [Neisseria gonorrhoeae DGI2]
 gi|193933480|gb|ACF29304.1| Penicillin-binding protein [Neisseria gonorrhoeae NCCP11945]
 gi|291011105|gb|EFE03101.1| penicillin-binding protein [Neisseria gonorrhoeae DGI2]
 gi|317163912|gb|ADV07453.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 441

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 141/252 (55%), Gaps = 10/252 (3%)

Query: 48  LHAKPKYSS--------IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +HA P   +        IVID+   Q    K  + P  PA+LT++MT Y++F+ ++S  +
Sbjct: 84  VHAAPTLQTPETLTAAHIVIDLQSRQTLSAKNTNTPVEPAALTQLMTAYLVFKNMKSGNI 143

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKK 157
                + + ++A     S+++++     +T++ +  +I   AND +    + +  GS + 
Sbjct: 144 QSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALCANDAALTLADRLGNGSIEN 203

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A+L   L ++FP+YY  FSI+ F
Sbjct: 204 FVQQMNKEARRLGMKNTVFKNPTGLGREGQVSTAKDLALLSEALMRDFPEYYPLFSIKSF 263

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           ++ N    N N LL + +N++G+K G+T + G+N+  S       I+ + +G  +++ R 
Sbjct: 264 KFENIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRA 323

Query: 278 QKALELITSFLE 289
               +L+   L+
Sbjct: 324 SDNSKLLNRALQ 335


>gi|119713206|gb|ABL97274.1| D-alanyl-D-alanine carboxypeptidase [uncultured marine bacterium
           EB0_50A10]
          Length = 384

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 89/280 (31%), Positives = 149/280 (53%), Gaps = 9/280 (3%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A EL  K   S I+I+ N N +   F  D    PAS+TK+MT Y++ + + +  + L+ Q
Sbjct: 23  APELDLK---SYILIEPNTNTVIAEFNSDSEIEPASMTKIMTSYVVADQIANDLISLDDQ 79

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           + +S+ A     SK++++     +    +  +I +S ND S A  E+  G+E+ F  LM+
Sbjct: 80  VLISEKAWRMEGSKMFIEAGKKVSVSDLLKGIIIQSGNDASVAIAEYAGGTERGFVDLMN 139

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI 223
             A  + M NTI+KN++GL D+N  ++A+D A L     K FP  Y  ++ ++F + N  
Sbjct: 140 AYAGALSMNNTIFKNSTGLPDENHFSSAKDLATLTSDFIKKFPDIYSLYNEKQFTFNNIK 199

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER---DQKA 280
             N NKLL +  + DG+KTG+T  +G+ +V S +  +  ++ VV G  +   R    Q+ 
Sbjct: 200 QLNRNKLLWRDDSSDGVKTGHTEAAGYCLVGSAKRGNMRLITVVAGSDSDNNRFLASQRL 259

Query: 281 LEL-ITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
           LE     F  +K L   Q ++  N+    L+KSL +  L+
Sbjct: 260 LEYGFRFFATQKVLNANQEYKNINIWG-GLEKSLSLGVLE 298


>gi|293399410|ref|ZP_06643563.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
           5/6) [Neisseria gonorrhoeae F62]
 gi|291609979|gb|EFF39101.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
           5/6) [Neisseria gonorrhoeae F62]
          Length = 441

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 141/252 (55%), Gaps = 10/252 (3%)

Query: 48  LHAKPKYSS--------IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +HA P   +        IVID+   Q    K  + P  PA+LT++MT Y++F+ ++S  +
Sbjct: 84  VHAAPTLQTPETLTAAHIVIDLQSRQTLSAKNTNTPVEPAALTQLMTAYLVFKNMKSGNI 143

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKK 157
                + + ++A     S+++++     +T++ +  +I   AND +    + +  GS + 
Sbjct: 144 QSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALCANDAALTLADRLGNGSIEN 203

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A+L   L ++FP+YY  FSI+ F
Sbjct: 204 FVQQMNKEARRLGMKNTVFKNPTGLGREGQVSTAKDLALLSEALMRDFPEYYPLFSIKSF 263

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           ++ N    N N LL + +N++G+K G+T + G+N+  S       I+ + +G  +++ R 
Sbjct: 264 KFENIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESTETRA 323

Query: 278 QKALELITSFLE 289
               +L+   L+
Sbjct: 324 SDNSKLLNRALQ 335


>gi|269961547|ref|ZP_06175909.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi 1DA3]
 gi|269833588|gb|EEZ87685.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi 1DA3]
          Length = 392

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 86/255 (33%), Positives = 139/255 (54%), Gaps = 8/255 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
           F S +++  A ++ AK     +++D N  ++   K+   +  PASLTKMMT Y+I + L 
Sbjct: 26  FASPVVVPDAPQIAAK---GYVLMDYNSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELA 82

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              +  +  + +SK A  +N    SK++++  T          +I +S ND   A  E I
Sbjct: 83  RGNISEDDDVTISKNAWAKNFPDSSKMFIEVGTTVKVHDLNRGIIIQSGNDACVAMAEHI 142

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  F  LM+  A  +GM+NT + N  GL + N  +T  D A+LG  L ++ P  Y+ 
Sbjct: 143 AGSEDAFVDLMNAWANTLGMKNTHFANVHGLDNPNLYSTPYDMALLGKALIRDVPDEYRI 202

Query: 212 FSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL +K  N+DGIKTG+T N+G+++V+S       +VAVVMG 
Sbjct: 203 YSDKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGQMRLVAVVMGT 262

Query: 271 PTSQERDQKALELIT 285
             +  R  ++ +L++
Sbjct: 263 KDANARKSESKKLLS 277


>gi|156973523|ref|YP_001444430.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi ATCC BAA-1116]
 gi|156525117|gb|ABU70203.1| hypothetical protein VIBHAR_01214 [Vibrio harveyi ATCC BAA-1116]
          Length = 392

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 86/255 (33%), Positives = 139/255 (54%), Gaps = 8/255 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
           F S +++  A ++ AK     +++D N  ++   K+   +  PASLTKMMT Y+I + L 
Sbjct: 26  FASPVVVPDAPQIAAK---GYVLMDYNSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELA 82

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              +  +  + +SK A  +N    SK++++  T          +I +S ND   A  E I
Sbjct: 83  RGNISEDDDVTISKNAWAKNFPDSSKMFIEVGTTVKVHDLNRGIIIQSGNDACVAMAEHI 142

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  F  LM+  A  +GM+NT + N  GL + N  +T  D A+LG  L ++ P  Y+ 
Sbjct: 143 AGSEDAFVDLMNAWANTLGMKNTHFANVHGLDNPNLYSTPYDMALLGKALIRDVPDEYRI 202

Query: 212 FSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL +K  N+DGIKTG+T N+G+++V+S       +VAVVMG 
Sbjct: 203 YSDKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGQMRLVAVVMGT 262

Query: 271 PTSQERDQKALELIT 285
             +  R  ++ +L++
Sbjct: 263 KDANARKSESKKLLS 277


>gi|126736702|ref|ZP_01752441.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. CCS2]
 gi|126713817|gb|EBA10689.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. CCS2]
          Length = 382

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 122/218 (55%), Gaps = 5/218 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D P  PAS++K+MT+Y+ FE +   +L +N ++ VS  AA+   S ++L      + E  
Sbjct: 38  DTPLPPASMSKLMTIYMAFEAVADGRLDINEELAVSSHAASFGGSSMFLDTTDRVSVEDL 97

Query: 132 ILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           +  +I  S ND S    E +S  G+E  FA +M+++A+++GM N+ + N+SG        
Sbjct: 98  LRGVIVVSGNDASVVLAEALSPDGTESGFARMMTDRARQMGMMNSTFVNSSGWPAAGHRM 157

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT---NHNKLLNKMHNIDGIKTGYTR 246
           +  D  IL   L  +FP +Y  F+  +F +  R+ +   N N +L+     DG+KTG+T 
Sbjct: 158 SMEDLGILANRLITDFPTFYPLFAETEFPFDGRVPSNSRNRNPVLSMGIGADGLKTGHTE 217

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +GF +V S +  D  I+ V+ G+ + QER +++ ++I
Sbjct: 218 EAGFGLVGSAKQDDRRIIFVITGLDSRQERSEESAKII 255


>gi|261367341|ref|ZP_05980224.1| serine-type D-Ala-D-Ala carboxypeptidase [Subdoligranulum variabile
           DSM 15176]
 gi|282570101|gb|EFB75636.1| serine-type D-Ala-D-Ala carboxypeptidase [Subdoligranulum variabile
           DSM 15176]
          Length = 405

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 80/236 (33%), Positives = 129/236 (54%), Gaps = 3/236 (1%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  ++I++D +   +   K  DE R  AS+TK+MTL + F+ L+S+K+ L   +PVS+ A
Sbjct: 54  PCEAAILVDEDSGTVLYEKNADEQRPIASITKVMTLLLTFQALESRKISLEDNVPVSEHA 113

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   S+++L+     T    + A+   SAND + A  EF+ GSE  F  +M+  A ++G
Sbjct: 114 YSMGGSQIWLEPGEQMTLNDMLKAICVSSANDAAVAVAEFVGGSEPAFVQMMNETAAQLG 173

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--ITNHN 228
           M +T ++NA GL  +  +++ARD AI+   +  +  +   Y SI     RN    + N N
Sbjct: 174 MTSTHFENACGLDQEGHLSSARDVAIMSREMLLHHTEVRDYCSIWTDTLRNGATQLVNTN 233

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           KLL   + I G+KTG T  +G  I  S       ++AVV+G  + +ER Q A  L+
Sbjct: 234 KLLKSYNGITGLKTGTTSKAGVCISASAERNGLRLIAVVLGSASGKERFQAATALL 289


>gi|156934665|ref|YP_001438581.1| D-alanyl-D-alanine carboxypeptidase fraction C [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156532919|gb|ABU77745.1| hypothetical protein ESA_02500 [Cronobacter sakazakii ATCC BAA-894]
          Length = 410

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 128/226 (56%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+HL+ ++ V K A AT NP     S ++LK    
Sbjct: 69  DEKLDPASLTKLMTSYVVGQALKAGKIHLDDKVTVGKDAWATGNPALRGSSLMFLKPGDQ 128

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND S A  ++++GS+  F  LM+  AK++G+ NT +K   GL   
Sbjct: 129 VSVADLNKGVIIQSGNDASIAIADYVAGSQDAFVSLMNGYAKRLGLTNTTFKTVHGLDAP 188

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLL-NKMHNIDG 239
            Q +TARD A+LG  L  + P  Y     K F+  K R  NR     N+LL +   N+DG
Sbjct: 189 GQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNKIRQPNR-----NRLLWSSSMNVDG 243

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T   R +++ +L+T
Sbjct: 244 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDGIRFRESEKLLT 289


>gi|149914154|ref|ZP_01902685.1| Serine-type D-Ala-D-Ala carboxypeptidase [Roseobacter sp. AzwK-3b]
 gi|149811673|gb|EDM71506.1| Serine-type D-Ala-D-Ala carboxypeptidase [Roseobacter sp. AzwK-3b]
          Length = 388

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 142/266 (53%), Gaps = 11/266 (4%)

Query: 39  IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKK 97
           I+++S A+    +   S+ V D+    +   K  D P  PAS++K+MTLY+ FE ++  +
Sbjct: 15  IVLVSPAAAFDTR-ATSAFVFDMKTGTVLLSKNADAPLPPASMSKLMTLYVTFEAIRDGR 73

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS--GSE 155
           L L+ ++PVS+ A +   S ++L        E  +  +I  S ND      E +S  G+E
Sbjct: 74  LSLDDRLPVSQHAMSFGGSTMFLDTTDRVRVEDLLRGIIVLSGNDACVVLAEALSPDGTE 133

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           + FA  M+ +A+++GM N+ + N+SG        + RD A+L   + ++FP++Y  F+  
Sbjct: 134 QGFARYMTQRAQQMGMTNSTFMNSSGWPAAGHRMSMRDLALLSRHIIEDFPEFYPMFAET 193

Query: 216 KFRYRNRI---ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           KF +  R      N N +L      DG+KTG+T+ +G+ +V S +  D  ++ V+ G+ T
Sbjct: 194 KFEFDGRAPQNTRNRNPILGLGIGADGLKTGHTQEAGYGLVGSAKQGDRRVIFVISGLET 253

Query: 273 SQERDQKALELIT----SFLEKKTLK 294
            Q R +++  ++      F+EK  +K
Sbjct: 254 RQARAEESEAIVNWSFRQFVEKSVVK 279


>gi|290476200|ref|YP_003469100.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Xenorhabdus bovienii SS-2004]
 gi|289175533|emb|CBJ82336.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Xenorhabdus bovienii SS-2004]
          Length = 402

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 86/242 (35%), Positives = 138/242 (57%), Gaps = 18/242 (7%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           I+ID N  ++   K  D  R PASLTKMMT Y+I + ++S K+  N  + V K A AT N
Sbjct: 49  ILIDYNSGKILAEKNSDIRRDPASLTKMMTSYVIGQAIKSGKIGPNDTVTVGKDAWATGN 108

Query: 115 P-----SKLYLKEKTYFTTEQGILALITR-----SANDVSTAFGEFISGSEKKFAILMSN 164
           P     S ++LK       +Q  +A+++R     S ND   A  ++++GS+  F  LM+ 
Sbjct: 109 PVFKGSSLMFLKPG-----DQVSVAMLSRGINLQSGNDACVAMADYVAGSQDAFVNLMNK 163

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII 224
             + +G+QNT ++   GL    Q ++A D A++G  L ++ P  Y  +  ++F Y N   
Sbjct: 164 YVQNLGLQNTHFETVHGLDAAGQYSSAHDMALIGQALIRDVPDEYAIYKEKEFTYNNIHQ 223

Query: 225 TNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            N N LL +K  N+DGIKTG+T  +G+N+V+S    +  +++VVMG PT + R+  + +L
Sbjct: 224 PNRNGLLWDKSLNVDGIKTGHTSGAGYNLVSSATESNMRLISVVMGSPTFKGRETDSKKL 283

Query: 284 IT 285
           +T
Sbjct: 284 LT 285


>gi|253687572|ref|YP_003016762.1| Beta-lactamase [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|261822396|ref|YP_003260502.1| D-alanyl-D-alanine carboxypeptidase fraction A [Pectobacterium
           wasabiae WPP163]
 gi|251754150|gb|ACT12226.1| Beta-lactamase [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|261606409|gb|ACX88895.1| Beta-lactamase [Pectobacterium wasabiae WPP163]
          Length = 403

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 85/253 (33%), Positives = 139/253 (54%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  + +     D  R PASLTKMMT Y+I + ++S K+ 
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEMNADTRRDPASLTKMMTSYVIGQAIKSGKIS 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            N  + V K A AT NP     S ++LK        Q    +I +S ND   A  ++++G
Sbjct: 94  PNDIVTVGKDAWATGNPTFQGSSLMFLKPGDRVPVSQLNRGIILQSGNDACVAMADYVAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+   K +G+QNT ++   GL    Q ++ARD A++G  L ++ P+ Y  + 
Sbjct: 154 SQDAFVNLMNGYVKALGLQNTNFETVHGLDAPGQFSSARDMALIGQALIRDVPEEYATYK 213

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F + N    N N LL +   N+DGIKTG+T ++GFN+V S       +++ V+G   
Sbjct: 214 EKEFTFNNIRQPNRNGLLWDSSLNVDGIKTGHTSSAGFNLVASATEGQMRLISAVLGGRN 273

Query: 273 SQERDQKALELIT 285
           ++ R+ ++ +L+T
Sbjct: 274 AKGRESESKKLLT 286


>gi|50120239|ref|YP_049406.1| D-alanyl-D-alanine carboxypeptidase fraction A [Pectobacterium
           atrosepticum SCRI1043]
 gi|49610765|emb|CAG74210.1| D-alanine carboxypeptidase [Pectobacterium atrosepticum SCRI1043]
          Length = 403

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 85/253 (33%), Positives = 139/253 (54%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  + +     D  R PASLTKMMT Y+I + ++S K+ 
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEMNADTRRDPASLTKMMTSYVIGQAIKSGKIS 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            N  + V K A AT NP     S ++LK        Q    +I +S ND   A  ++++G
Sbjct: 94  PNDIVTVGKDAWATGNPTFQGSSLMFLKPGDRVPVSQLNRGIILQSGNDACVAMADYVAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+   K +G+QNT ++   GL    Q ++ARD A++G  L ++ P+ Y  + 
Sbjct: 154 SQDAFVNLMNGYVKALGLQNTNFETVHGLDAPGQFSSARDMALIGQALIRDVPEEYATYK 213

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F + N    N N LL +   N+DGIKTG+T ++GFN+V S       +++ V+G   
Sbjct: 214 EKEFTFNNIRQPNRNGLLWDSSLNVDGIKTGHTSSAGFNLVASATEGQMRLISAVLGGRN 273

Query: 273 SQERDQKALELIT 285
           ++ R+ ++ +L+T
Sbjct: 274 AKGRESESKKLLT 286


>gi|15640963|ref|NP_230594.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|9655406|gb|AAF94109.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O1 biovar El
           Tor str. N16961]
          Length = 391

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 86/255 (33%), Positives = 139/255 (54%), Gaps = 8/255 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           F S I+   A ++ AK     +++D +  ++   K+ D    PASLTKMMT Y+I + ++
Sbjct: 25  FASPIVTPDAPQIAAK---GYVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVIGQEVK 81

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              + LN  + +SK A  +N    SK++++  T          +I +S ND   A  E +
Sbjct: 82  RGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHV 141

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +G+E  F  LM+  A  +GM+N+ + N+ GL D N  +T  D A+LG  L +  P+ Y  
Sbjct: 142 AGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQALIRXVPEEYAI 201

Query: 212 FSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL +K  N+DGIKTG+T  +G+N+V+S    +  +VAVVMG 
Sbjct: 202 YSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGT 261

Query: 271 PTSQERDQKALELIT 285
                R  ++ +L++
Sbjct: 262 DNENARKAESKKLLS 276


>gi|331089686|ref|ZP_08338584.1| hypothetical protein HMPREF1025_02167 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330404521|gb|EGG84064.1| hypothetical protein HMPREF1025_02167 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 434

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 129/230 (56%), Gaps = 18/230 (7%)

Query: 69  FKQDEP--RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYF 126
           F+QD    R PAS+TK+MT+ +IF+ ++SKK+ L  ++PVS+ AA+   S+++L+     
Sbjct: 92  FEQDADTKRPPASVTKIMTMLLIFDAVESKKISLEDKVPVSEFAASMGGSQVFLETGETQ 151

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           T +  +  +   SAND   A  E+ISGSE+ F   M+ +AK +GM NT + N +GL  + 
Sbjct: 152 TVDTMLKCISIASANDACVAMAEYISGSEEAFVQEMNKRAKALGMHNTNFVNCNGLDAQG 211

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI------------ITNHNKLLNKM 234
            +TTARD A++   L   +PQ ++Y       +   I            +TN NKL+ + 
Sbjct: 212 HVTTARDIALMSRELITKYPQIHEY----AMTWMENITHETKKGTSEFGLTNTNKLVRQY 267

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
               G+KTG T  + F +  + +  D  ++AVVM   TS+ER   A++++
Sbjct: 268 EYATGLKTGSTGEAKFCVSATGKKDDVELIAVVMAADTSKERFADAVKMM 317


>gi|182678513|ref|YP_001832659.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182634396|gb|ACB95170.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 394

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 124/236 (52%), Gaps = 9/236 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN--PSK---LYLKEKTYF 126
           D P  PAS  K+MT  ++F+ L+  ++HL+    +S+TA  Q   PS+   +Y    ++ 
Sbjct: 54  DAPVIPASTAKIMTAELVFQNLREGRIHLDDTFLISETAWRQGGAPSRGSSMYAALNSHV 113

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
             E  I  L+  S ND + A  E ++GSE  FA LM+ +A+++G+ ++++ NA G  D +
Sbjct: 114 RVEDLIRGLVIDSGNDAAIALAEGLAGSEGAFATLMTKRARELGLDHSVFTNAWGRGDPD 173

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           Q+ TARD A L   +   +P YYKYF  ++F +     TN N LL      DG+KTG   
Sbjct: 174 QLVTARDMARLAAHVITTYPDYYKYFGEKEFTWNKIRQTNRNPLLTMDFGADGLKTGNID 233

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT----SFLEKKTLKHQQT 298
            SG+ +V S     + ++  + G   ++ER  +A  L      SF  K   K  +T
Sbjct: 234 ASGYGLVGSAVQNGERLILALYGAKNAKERADEARRLFLWGFRSFTTKTVYKANET 289


>gi|229845375|ref|ZP_04465506.1| penicillin-binding protein 5 precursor [Haemophilus influenzae
           6P18H1]
 gi|229811683|gb|EEP47381.1| penicillin-binding protein 5 precursor [Haemophilus influenzae
           6P18H1]
          Length = 393

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 134/234 (57%), Gaps = 6/234 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           +++D N    +T    D+ +YPASLTKMMT Y++   L+  K+H    + + ++A  +N 
Sbjct: 42  VLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNF 101

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L   T  +       +I  S ND + A  E ISG+   F   M+   ++ G++
Sbjct: 102 PDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGLK 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           NT +    GL D NQ ++ARD AI+G  + ++ P+ YK +S + F +      N N LL 
Sbjct: 162 NTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQANRNGLLW 221

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELI 284
           +K  N+DG+KTG+T  +G+N+V S    ++  +++VVMG+PT + R+ ++ +L+
Sbjct: 222 DKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLL 275


>gi|68248580|ref|YP_247692.1| penicillin-binding protein 5 [Haemophilus influenzae 86-028NP]
 gi|68056779|gb|AAX87032.1| penicillin-binding protein 5 precursor [Haemophilus influenzae
           86-028NP]
          Length = 393

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 134/234 (57%), Gaps = 6/234 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           +++D N    +T    D+ +YPASLTKMMT Y++   L+  K+H    + + ++A  +N 
Sbjct: 42  VLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNF 101

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L   T  +       +I  S ND + A  E ISG+   F   M+   ++ G++
Sbjct: 102 PDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGLK 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           NT +    GL D NQ ++ARD AI+G  + ++ P+ YK +S + F +      N N LL 
Sbjct: 162 NTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQANRNGLLW 221

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELI 284
           +K  N+DG+KTG+T  +G+N+V S    ++  +++VVMG+PT + R+ ++ +L+
Sbjct: 222 DKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLL 275


>gi|260597233|ref|YP_003209804.1| D-alanyl-D-alanine carboxypeptidase fraction C [Cronobacter
           turicensis z3032]
 gi|260216410|emb|CBA29490.1| D-alanyl-D-alanine carboxypeptidase dacC [Cronobacter turicensis
           z3032]
          Length = 403

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 92/284 (32%), Positives = 146/284 (51%), Gaps = 34/284 (11%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQ-----------MTGFKQDE 73
           +R + L G  L +S+      S  HA    + +  DV+              +     DE
Sbjct: 10  RRVLALSGAFLLMSL------STAHAADPIAPVAPDVDARAWILMDYHSGKVLAEGNADE 63

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFT 127
              PASLTK+MT Y++ + L++ K+HL+ ++ V K A AT NP     S ++LK     +
Sbjct: 64  KLDPASLTKLMTSYVVGQALKAGKIHLDDKVTVGKDAWATGNPALRGSSLMFLKPGDQVS 123

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
                  +I +S ND S A  ++++GS+  F  LM+  AK++G+ +T +K   GL    Q
Sbjct: 124 VADLNKGVIIQSGNDASIAIADYVAGSQDAFVGLMNGYAKRLGLTSTTFKTVHGLDAPGQ 183

Query: 188 ITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIK 241
            +TARD A+LG  L  + P  Y     K F+  K R  NR     N+LL +   N+DG+K
Sbjct: 184 FSTARDMALLGKALIHDVPDEYAIHKEKEFTFNKIRQPNR-----NRLLWSSSMNVDGMK 238

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           TG T  +G+N+V S    D  +++VV+G  T   R +++ +L+T
Sbjct: 239 TGTTAGAGYNLVASATQGDMRLISVVLGAKTDGIRFRESEKLLT 282


>gi|171060904|ref|YP_001793253.1| Serine-type D-Ala-D-Ala carboxypeptidase [Leptothrix cholodnii
           SP-6]
 gi|170778349|gb|ACB36488.1| Serine-type D-Ala-D-Ala carboxypeptidase [Leptothrix cholodnii
           SP-6]
          Length = 389

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 143/247 (57%), Gaps = 13/247 (5%)

Query: 50  AKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           A P+ ++   +++DV+ NQ+   +  D    PASLTK+MT Y++F+ L+ KKL L  ++ 
Sbjct: 31  APPEVAARAYLLLDVSANQVLAERDADATVEPASLTKLMTAYLVFQALRDKKLALEQELT 90

Query: 106 VSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           VS+ A      + S++Y++  T    E  I  +I +S ND +    E + G+ + F +LM
Sbjct: 91  VSERAWRTGMTDTSRMYIQVGTKVKVEDLIKGMIVQSGNDATVQLAEAVGGTLENFVVLM 150

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
           + +A+  G++ T ++N  GL     ++TAR+ +I+   L  +FP   +Y+++++F +   
Sbjct: 151 NRQAQAFGLKVTQFRNPEGLPAPGHVSTARELSIIASRLLVDFPAEARYYTLKEFTFNKI 210

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP-----IVAVVMGMPTSQERD 277
              N N LL +   +DG+KTGYT N+G+ ++ + + +D P     +V+V++G  + + R 
Sbjct: 211 KQPNRNLLLWRDPTVDGLKTGYTDNAGYCLIATAK-RDLPAGQRRLVSVILGASSKESRA 269

Query: 278 QKALELI 284
            +A +L+
Sbjct: 270 TEAQKLL 276


>gi|51595441|ref|YP_069632.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia
           pseudotuberculosis IP 32953]
 gi|153946853|ref|YP_001401914.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia
           pseudotuberculosis IP 31758]
 gi|51588723|emb|CAH20334.1| putative penicillin-binding protein 5 [Yersinia pseudotuberculosis
           IP 32953]
 gi|152958348|gb|ABS45809.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pseudotuberculosis IP
           31758]
          Length = 400

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/237 (34%), Positives = 133/237 (56%), Gaps = 8/237 (3%)

Query: 57  IVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           I+ID N  ++      D  R PASLTKMMT Y+I + ++S K+  +  + V K A AT N
Sbjct: 47  ILIDYNSGKVLAEMNADTRRNPASLTKMMTSYVIGQAIKSGKIGADDMVTVGKDAWATGN 106

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S ++LK        +    +  +S ND   A  ++++GS+  F  LM+N  K +
Sbjct: 107 PEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNLMNNYVKAL 166

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+QNT +K   GL  + Q ++ARD A++G  L ++ P  Y  +  ++F + N   TN N 
Sbjct: 167 GLQNTHFKTVHGLDAEGQFSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQTNRNG 226

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL +   N+DGIKTG+T  +G+N+V S       +++VV+G  T + R+ ++ +L+T
Sbjct: 227 LLWDTSLNVDGIKTGHTEAAGYNLVASATDGQMRLISVVLGGHTFKGRETESKKLLT 283


>gi|145629114|ref|ZP_01784913.1| hypothetical protein CGSHi22121_09940 [Haemophilus influenzae
           22.1-21]
 gi|144978617|gb|EDJ88340.1| hypothetical protein CGSHi22121_09940 [Haemophilus influenzae
           22.1-21]
          Length = 393

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 134/234 (57%), Gaps = 6/234 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           +++D N    +T    D+ +YPASLTKMMT Y++   L+  K+H    + + ++A  +N 
Sbjct: 42  VLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNF 101

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L   T  +       +I  S ND + A  E ISG+   F   M+   ++ G++
Sbjct: 102 PDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGLK 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           NT +    GL D NQ ++ARD AI+G  + ++ P+ YK +S + F +      N N LL 
Sbjct: 162 NTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKNFTFNKIKQANRNGLLW 221

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELI 284
           +K  N+DG+KTG+T  +G+N+V S    ++  +++VVMG+PT + R+ ++ +L+
Sbjct: 222 DKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLL 275


>gi|16272004|ref|NP_438202.1| penicillin-binding protein 5 [Haemophilus influenzae Rd KW20]
 gi|260580667|ref|ZP_05848494.1| D-alanyl-D-alanine carboxypeptidase dacA [Haemophilus influenzae
           RdAW]
 gi|1169208|sp|P44466|DACA_HAEIN RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA;
           Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
           Full=Penicillin-binding protein 5; Short=PBP-5; Flags:
           Precursor
 gi|1572974|gb|AAC21707.1| penicillin-binding protein 5 (dacA) [Haemophilus influenzae Rd
           KW20]
 gi|260092729|gb|EEW76665.1| D-alanyl-D-alanine carboxypeptidase dacA [Haemophilus influenzae
           RdAW]
          Length = 393

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 134/234 (57%), Gaps = 6/234 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           +++D N    +T    D+ +YPASLTKMMT Y++   L+  K+H    + + ++A  +N 
Sbjct: 42  VLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNF 101

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L   T  +       +I  S ND + A  E ISG+   F   M+   ++ G++
Sbjct: 102 PDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGLK 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           NT +    GL D NQ ++ARD AI+G  + ++ P+ YK +S + F +      N N LL 
Sbjct: 162 NTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKNFTFNKIKQANRNGLLW 221

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELI 284
           +K  N+DG+KTG+T  +G+N+V S    ++  +++VVMG+PT + R+ ++ +L+
Sbjct: 222 DKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLL 275


>gi|145641831|ref|ZP_01797406.1| hypothetical protein CGSHiR3021_01137 [Haemophilus influenzae
           R3021]
 gi|229846948|ref|ZP_04467054.1| penicillin-binding protein 5 precursor [Haemophilus influenzae
           7P49H1]
 gi|145273453|gb|EDK13324.1| hypothetical protein CGSHiR3021_01137 [Haemophilus influenzae
           22.4-21]
 gi|229810032|gb|EEP45752.1| penicillin-binding protein 5 precursor [Haemophilus influenzae
           7P49H1]
          Length = 393

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 134/234 (57%), Gaps = 6/234 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           +++D N    +T    D+ +YPASLTKMMT Y++   L+  K+H    + + ++A  +N 
Sbjct: 42  VLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNF 101

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L   T  +       +I  S ND + A  E ISG+   F   M+   ++ G++
Sbjct: 102 PDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGLK 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           NT +    GL D NQ ++ARD AI+G  + ++ P+ YK +S + F +      N N LL 
Sbjct: 162 NTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQANRNGLLW 221

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELI 284
           +K  N+DG+KTG+T  +G+N+V S    ++  +++VVMG+PT + R+ ++ +L+
Sbjct: 222 DKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLL 275


>gi|226939903|ref|YP_002794976.1| DacC [Laribacter hongkongensis HLHK9]
 gi|226714829|gb|ACO73967.1| DacC [Laribacter hongkongensis HLHK9]
          Length = 382

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 123/208 (59%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT Y+ F+ ++  +L     +  S+ A     S+++L  +T  +    +  +I
Sbjct: 62  PASLTKLMTAYLTFKAIKEGRLKGEQMLQPSEKAWRTEGSRMFLDLRTPVSVNDLMRGMI 121

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND      E I GSE+ FA +M+ +AK++GM  + + N++GL D N   T RD  I
Sbjct: 122 VQSGNDACVTLAEAIGGSEEVFAQMMNREAKRLGMTGSNFTNSTGLPDPNLYMTVRDLGI 181

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   L  ++P++Y  +S+++F Y      N N LL +  ++DG+KTG+T ++GFN+V+S 
Sbjct: 182 LSGALIHDYPEFYPIYSMKEFTYNKIKQPNRNLLLYRDPSVDGLKTGHTASAGFNLVSSA 241

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELI 284
           +  D  +++VV+G  + + R  ++ +L+
Sbjct: 242 KRDDRRVISVVVGTTSPEARAVESSKLL 269


>gi|145639682|ref|ZP_01795285.1| hypothetical protein CGSHiII_09201 [Haemophilus influenzae PittII]
 gi|145271239|gb|EDK11153.1| hypothetical protein CGSHiII_09201 [Haemophilus influenzae PittII]
 gi|309750652|gb|ADO80636.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Haemophilus influenzae R2866]
          Length = 393

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 134/234 (57%), Gaps = 6/234 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           +++D N    +T    D+ +YPASLTKMMT Y++   L+  K+H    + + ++A  +N 
Sbjct: 42  VLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNF 101

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L   T  +       +I  S ND + A  E ISG+   F   M+   ++ G++
Sbjct: 102 PDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGLK 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           NT +    GL D NQ ++ARD AI+G  + ++ P+ YK +S + F +      N N LL 
Sbjct: 162 NTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKNFTFNKIKQANRNGLLW 221

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELI 284
           +K  N+DG+KTG+T  +G+N+V S    ++  +++VVMG+PT + R+ ++ +L+
Sbjct: 222 DKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLL 275


>gi|85058773|ref|YP_454475.1| D-alanyl-D-alanine carboxypeptidase fraction A [Sodalis
           glossinidius str. 'morsitans']
 gi|84779293|dbj|BAE74070.1| penicillin-binding protein 5 [Sodalis glossinidius str.
           'morsitans']
          Length = 403

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 147/269 (54%), Gaps = 17/269 (6%)

Query: 34  ILFLSIIMISMASELHAK------PKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLTKM 83
           +L + ++  S A +++ K      P+  +   I+ID N  + +T    D  R PASLTKM
Sbjct: 18  VLVMGVVSTSFADDVNLKTMIPGVPQIDAESYILIDYNSGKVLTEMNADVRRDPASLTKM 77

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALIT 137
           MT Y+I + ++S K+  N  + V+K A AT NP     S ++LK        Q    +I 
Sbjct: 78  MTSYVIGQAIKSGKITPNDVVTVNKDAWATGNPVFKGSSLMFLKPGDRVPVSQLNRGIIL 137

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND   A  ++++GS+  F  LM+N    +G+QNT ++   GL    Q ++ARD A++
Sbjct: 138 QSGNDACVAMADYVAGSQDAFVGLMNNYVGALGLQNTHFETVHGLDAPGQFSSARDMAMI 197

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSL 256
           G  L ++ P  Y  +  ++F + N    N N LL   + N+DGIKTG+T ++G+N+V S 
Sbjct: 198 GKALIRDVPDEYATYKEKEFTFNNIRQMNRNGLLWDSNLNVDGIKTGHTESAGYNLVASA 257

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELIT 285
                 +++ V+G  + + R+ ++ +L+T
Sbjct: 258 TEGQMRLISAVLGGHSMKGRENESRKLMT 286


>gi|114561878|ref|YP_749391.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella frigidimarina
           NCIMB 400]
 gi|114333171|gb|ABI70553.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella frigidimarina
           NCIMB 400]
          Length = 403

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 18/242 (7%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I   ++   + L+  + ++K A  +N    SK++++            
Sbjct: 75  PASLTKMMTSYVIGHEIRVGNISLDDDVAITKNAWAKNFPDSSKMFIEVGKTVKVHDLNR 134

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E I+G+E  F  LM++ AK++GM+++ ++N+ GL  +N  TTA D
Sbjct: 135 GIIIQSGNDACVAMAEHIAGTEGAFVDLMNSWAKQLGMKDSYFENSHGLDSENHKTTAYD 194

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            AILG  L ++ P+ YK +S + F Y      N N LL +K  N+DGIKTG+T  +G+N+
Sbjct: 195 MAILGAALIRDVPEEYKVYSEKSFTYNGIKQYNRNGLLWDKSLNVDGIKTGHTSGAGYNL 254

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKA------------LELITSFLEKKTLKHQQTHR 300
           V+S   +   +++VVMG  TS E  +KA             E IT +    T   QQ   
Sbjct: 255 VSSGTSEGMRLISVVMG--TSSESARKAESKKLLNYGFRFFETITPYKAGDTFVTQQIWY 312

Query: 301 KD 302
            D
Sbjct: 313 GD 314


>gi|319774981|ref|YP_004137469.1| penicillin-binding protein 5 [Haemophilus influenzae F3047]
 gi|317449572|emb|CBY85777.1| penicillin-binding protein 5 precursor [Haemophilus influenzae
           F3047]
          Length = 393

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 134/234 (57%), Gaps = 6/234 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           +++D N    +T    D+ +YPASLTKMMT Y++   L+  K+H    + + ++A  +N 
Sbjct: 42  VLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNF 101

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L   T  +       +I  S ND + A  E ISG+   F   M+   ++ G++
Sbjct: 102 PDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGLK 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           NT +    GL D NQ ++ARD AI+G  + ++ P+ YK +S + F +      N N LL 
Sbjct: 162 NTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQANRNGLLW 221

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELI 284
           +K  N+DG+KTG+T  +G+N+V S    ++  +++VVMG+PT + R+ ++ +L+
Sbjct: 222 DKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLL 275


>gi|296116334|ref|ZP_06834950.1| D-alanyl-D-alanine carboxypeptidase [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977153|gb|EFG83915.1| D-alanyl-D-alanine carboxypeptidase [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 435

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 122/228 (53%), Gaps = 6/228 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   P+SLTKMMT Y++F  L++ +L L+  + VS+ A     SK+++  +        
Sbjct: 109 DERMPPSSLTKMMTAYVVFGMLRAGRLKLDQTLTVSEKAWRMQGSKMFVPLQGAVAVSDL 168

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           I  ++ +S ND      E ++GSE +F  LM+ +A ++GM NT + NA+G        +A
Sbjct: 169 IQGMVIQSGNDACIVLAEGVAGSEDQFVSLMNAQAVQLGMTNTHFMNATGWPADGHYMSA 228

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRII-TNHNKLLNKMHNIDGIKTGYTRNSGF 250
           RD   + + L  +FP+YY +F+ + FRY NRI   N N L+ K    DG+KTG+T   GF
Sbjct: 229 RDVTTIAMHLIHDFPEYYHFFAEKGFRY-NRISQENRNALVVK-GIADGLKTGHTDAGGF 286

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKKTLKH 295
            +  S     + IV  + G+P+S  R    ++ LE      E  TL H
Sbjct: 287 GLCASSERNGNRIVMAINGLPSSNARAFEGERLLEWGFVNFENATLVH 334


>gi|88860565|ref|ZP_01135203.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Pseudoalteromonas tunicata D2]
 gi|88817763|gb|EAR27580.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Pseudoalteromonas tunicata D2]
          Length = 387

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/217 (37%), Positives = 125/217 (57%), Gaps = 4/217 (1%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTT 128
           DE   PASLTKMMT Y+I   +++K +  N  + VS+ A ++N    SK++++     + 
Sbjct: 57  DERLAPASLTKMMTSYVIGLEIKNKNISPNDLVTVSEKAWSKNFPDSSKMFIEVGKKISV 116

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           E+    +I +S ND   A  E I+GSE  FA LM+  A+K+GM NT + N+ GL      
Sbjct: 117 EELNRGIIIQSGNDACVAMAEHIAGSESAFADLMNAHAEKLGMTNTHFINSHGLDTDEHF 176

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRN 247
           TT RD A LG  L ++ P  Y  +S + F +      N N LL ++  ++DGIKTG+T  
Sbjct: 177 TTPRDMATLGGALIRDVPDEYAIYSEKSFTFNGIKQYNRNSLLWDESLDVDGIKTGHTSE 236

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +G+++VTS    D  +VAVVMG  + + R  ++ +L+
Sbjct: 237 AGYSLVTSATKGDMRLVAVVMGTESDRARRAESKKLL 273


>gi|148825690|ref|YP_001290443.1| hypothetical protein CGSHiEE_03165 [Haemophilus influenzae PittEE]
 gi|148715850|gb|ABQ98060.1| hypothetical protein CGSHiEE_03165 [Haemophilus influenzae PittEE]
          Length = 367

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 134/234 (57%), Gaps = 6/234 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           +++D N    +T    D+ +YPASLTKMMT Y++   L+  K+H    + + ++A  +N 
Sbjct: 16  VLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNF 75

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L   T  +       +I  S ND + A  E ISG+   F   M+   ++ G++
Sbjct: 76  PDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGLK 135

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           NT +    GL D NQ ++ARD AI+G  + ++ P+ YK +S + F +      N N LL 
Sbjct: 136 NTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQANRNGLLW 195

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELI 284
           +K  N+DG+KTG+T  +G+N+V S    ++  +++VVMG+PT + R+ ++ +L+
Sbjct: 196 DKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLL 249


>gi|322513157|ref|ZP_08066289.1| D-alanyl-D-alanine carboxypeptidase DacA [Actinobacillus ureae ATCC
           25976]
 gi|322121089|gb|EFX92912.1| D-alanyl-D-alanine carboxypeptidase DacA [Actinobacillus ureae ATCC
           25976]
          Length = 392

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/257 (33%), Positives = 150/257 (58%), Gaps = 10/257 (3%)

Query: 45  ASELHAKPKYSSIVIDVNK-NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A +L+A+   S I++D N  N +     D+ +YPASLTKMMT Y++ + L+  K+  +  
Sbjct: 32  APQLNAQ---SYILMDYNSGNVLASLNPDQRQYPASLTKMMTSYVVGDALKQGKVKNSDM 88

Query: 104 IPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
           + V++ +  Q     S ++L   T  + E  +  LI  S ND + A  E  SGS++ F  
Sbjct: 89  VTVTENSWAQKFPGSSLMFLDLNTQVSVEDLMRGLIIVSGNDAAVALAEHTSGSQQAFID 148

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
            M+  A++ G++NT +    GL + NQ ++ARD AI+G  + ++ P+ YK ++ ++F+Y 
Sbjct: 149 QMNKFAQQFGLKNTHFTTVHGLDEPNQYSSARDMAIIGAHIIRDQPEEYKIYAEKEFKYN 208

Query: 221 -NRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
             +   N N LL +K  N+DG+KTG+T  +G+N+V S    +  +++VVMG+ T + R+ 
Sbjct: 209 IKKPQPNRNGLLWDKTMNVDGMKTGHTSQAGYNLVASATNSNTRLISVVMGVGTYKGREV 268

Query: 279 KALELI-TSFLEKKTLK 294
           ++ +L+   F   +T+K
Sbjct: 269 ESKKLLQWGFANFETIK 285


>gi|254784818|ref|YP_003072246.1| penicillin-binding protein 6 [Teredinibacter turnerae T7901]
 gi|237684996|gb|ACR12260.1| penicillin-binding protein 6 [Teredinibacter turnerae T7901]
          Length = 390

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 154/288 (53%), Gaps = 16/288 (5%)

Query: 24  IQRNIQLMGKILFLSIIMISMASE--LHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYP 77
           + R   ++  +  L   M + AS+  + A P+ ++   ++ID +  + +     DE   P
Sbjct: 5   VARAALVLAHLFILVTPMAANASQVIIPAPPQLAATAYLLIDADTGKVIVEHNADEQLPP 64

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYFTTEQGI 132
           ASLTKMMT YI+ E + + +L     + VS  A     A    S ++L+ ++       +
Sbjct: 65  ASLTKMMTSYIVSEEIYAGRLQETDLVRVSDDAWRRGGAKSGSSTMFLEARSEVPVIDML 124

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             +I +S ND S A  + I+GSE+ FA +M+ +A+ +GM N+ ++NA+G   +  +TTAR
Sbjct: 125 RGVIIQSGNDASIALAQHIAGSEEAFAEIMNQQAQLLGMTNSHFRNATGWPAEGHLTTAR 184

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           D AIL   L  + P++Y  +S + F++      N NKLL   + +DGIKTG+T  +G+ +
Sbjct: 185 DLAILAKALINDHPKHYALYSEKHFKHNGISQPNRNKLLFTDNTVDGIKTGHTEAAGYCL 244

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           V S +     +++VVMG  +   R  ++ +L+         ++ QTH+
Sbjct: 245 VASAKRDGMRLISVVMGAKSENARAAESKKLLA-----YGFRYYQTHK 287


>gi|307544791|ref|YP_003897270.1| serine-type D-Ala-D-Ala carboxypeptidase [Halomonas elongata DSM
           2581]
 gi|307216815|emb|CBV42085.1| serine-type D-Ala-D-Ala carboxypeptidase [Halomonas elongata DSM
           2581]
          Length = 419

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 132/232 (56%), Gaps = 1/232 (0%)

Query: 55  SSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S I++D    ++      DE   PASLTK+MT Y++   L    +  +  +PVS+ A   
Sbjct: 68  SWILMDAGSGRVIAQHNPDERLPPASLTKLMTAYLVERELNKGNISPDDLVPVSEKAWRT 127

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             SK++++        + +  +I  S ND S A  E+++G  + FA +M+  A ++GM+N
Sbjct: 128 GGSKMFIEVGDRVPVSELLHGIIIVSGNDASVAMAEYLAGGTEPFADIMNQHAARLGMEN 187

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           T + N +GL   N  ++ARD A+L   +  ++P++Y  +  + F Y      N N LL +
Sbjct: 188 THFVNPTGLPHDNHYSSARDLALLSRHIINDYPKHYSMYRQKHFTYGGIDQPNRNSLLWR 247

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
             ++DG+KTG+T  +G+ +V+S + +D  +++VVMG  +++ R Q++ +L++
Sbjct: 248 DSSVDGLKTGWTEAAGYCLVSSAKREDMRLISVVMGTDSAEARVQESQKLLS 299


>gi|238753434|ref|ZP_04614797.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia ruckeri ATCC
           29473]
 gi|238708387|gb|EEQ00742.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia ruckeri ATCC
           29473]
          Length = 401

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/272 (31%), Positives = 149/272 (54%), Gaps = 14/272 (5%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP--KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTK 82
           +N+     +L L++  +  A E  A P    + +++D N  + +T    D+   PASLTK
Sbjct: 11  KNVTFSAGLLLLTMPAVRAADEQPAPPIDAKAYVLMDFNSGKILTQGNADQRLDPASLTK 70

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALI 136
           +M+ Y+I + +++ K+H +  + V K A AT NP     S ++LK             ++
Sbjct: 71  IMSSYVIGQAIKAGKVHPDDMVTVGKDAWATGNPVLRGSSLMFLKPGDQVKLLDLNKGIV 130

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  ++I+GS+  F  LM+N AK +G+ NT +    GL  + Q +TARD A+
Sbjct: 131 IQSGNDASIALADYIAGSQDSFVGLMNNYAKALGLDNTHFLTVHGLDAEGQYSTARDMAV 190

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTS 255
           L   L ++ P+ Y     ++F + N    N N+LL N   N+DG+KTG+T  +G N+V S
Sbjct: 191 LAQALIRDVPEEYALHKEKEFTFNNIRQINRNRLLWNTNLNVDGVKTGHTAGAGHNLVAS 250

Query: 256 LRYKDDP--IVAVVMGMPTSQERDQKALELIT 285
               D P  +++VV+G P+ + R  ++ +L++
Sbjct: 251 --ATDGPMRLISVVLGAPSDRVRFSESEKLLS 280


>gi|59800884|ref|YP_207596.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae FA 1090]
 gi|240016201|ref|ZP_04722741.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae FA6140]
 gi|240080345|ref|ZP_04724888.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae FA19]
 gi|240112554|ref|ZP_04727044.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae MS11]
 gi|240117582|ref|ZP_04731644.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae PID1]
 gi|240123137|ref|ZP_04736093.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae PID332]
 gi|254493357|ref|ZP_05106528.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae 1291]
 gi|268596491|ref|ZP_06130658.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae FA19]
 gi|268598622|ref|ZP_06132789.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae MS11]
 gi|268603285|ref|ZP_06137452.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID1]
 gi|268681765|ref|ZP_06148627.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID332]
 gi|59717779|gb|AAW89184.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae FA 1090]
 gi|226512397|gb|EEH61742.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae 1291]
 gi|268550279|gb|EEZ45298.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae FA19]
 gi|268582753|gb|EEZ47429.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae MS11]
 gi|268587416|gb|EEZ52092.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID1]
 gi|268622049|gb|EEZ54449.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID332]
          Length = 389

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 141/252 (55%), Gaps = 10/252 (3%)

Query: 48  LHAKPKYSS--------IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +HA P   +        IVID+   Q    K  + P  PA+LT++MT Y++F+ ++S  +
Sbjct: 32  VHAAPTLQTPETLTAAHIVIDLQSRQTLSAKNTNTPVEPAALTQLMTAYLVFKNMKSGNI 91

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKK 157
                + + ++A     S+++++     +T++ +  +I   AND +    + +  GS + 
Sbjct: 92  QSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALCANDAALTLADRLGNGSIEN 151

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   M+ +A+++GM+NT++KN +GL  + Q++TA+D ++L   L ++FP+YY  FSI+ F
Sbjct: 152 FVQQMNKEARRLGMKNTVFKNPTGLGREGQVSTAKDLSLLSEALMRDFPEYYPLFSIKSF 211

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           ++ N    N N LL + +N++G+K G+T + G+N+  S       I+ + +G  +++ R 
Sbjct: 212 KFENIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRA 271

Query: 278 QKALELITSFLE 289
               +L+   L+
Sbjct: 272 SDNSKLLNRALQ 283


>gi|317491121|ref|ZP_07949557.1| D-alanyl-D-alanine carboxypeptidase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920668|gb|EFV41991.1| D-alanyl-D-alanine carboxypeptidase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 403

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/275 (32%), Positives = 145/275 (52%), Gaps = 22/275 (8%)

Query: 33  KILFLSIIMISMASELHAK-----------PKYSS---IVIDVNKNQ-MTGFKQDEPRYP 77
           +I   S++ I M + +HA            P+  +   I+ID N  + +     D  R P
Sbjct: 12  RIALSSLLAIGMVNVVHADDVNLKTMIPGVPQIDAEAYILIDYNSGKVLAESNADARRNP 71

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQG 131
           ASLTKMMT Y+I + +++ K   N  + V + A AT NP     S ++LK          
Sbjct: 72  ASLTKMMTSYVIGQAMKAGKFTENDVVTVGQDAWATGNPVFKGSSLMFLKPGDRVPVSLL 131

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           I  +  +S ND   A  ++++GS+  F  LM+N  K +G+QNT ++   GL    Q ++A
Sbjct: 132 IRGINLQSGNDACVAMADYVAGSQDAFVGLMNNYVKALGLQNTHFQTVHGLDADGQYSSA 191

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGF 250
           RD A++G  L ++ P  Y  +  ++F + N    N N LL +   N+DGIKTG+T ++GF
Sbjct: 192 RDMALIGQALIRDVPNEYAIYKEKEFTFNNIRQMNRNGLLWDTSMNVDGIKTGHTESAGF 251

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N+V S       +++ V+G  TS+ R+ ++ +L+T
Sbjct: 252 NLVASATEGQMRLISAVLGGHTSKGRESESKKLLT 286


>gi|255744731|ref|ZP_05418682.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholera CIRS 101]
 gi|262161135|ref|ZP_06030246.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae INDRE 91/1]
 gi|255737762|gb|EET93156.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholera CIRS 101]
 gi|262028885|gb|EEY47538.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae INDRE 91/1]
          Length = 347

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/213 (36%), Positives = 121/213 (56%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I + ++   + LN  + +SK A  +N    SK++++  T         
Sbjct: 20  PASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNR 79

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E ++G+E  F  LM+  A  +GM+N+ + N+ GL D N  +T  D
Sbjct: 80  GIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYD 139

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A+LG  L ++ P+ Y  +S +KF Y      N N LL +K  N+DGIKTG+T  +G+N+
Sbjct: 140 LALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNL 199

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           V+S    +  +VAVVMG      R  ++ +L++
Sbjct: 200 VSSATEGNMRLVAVVMGTDNENARKAESKKLLS 232


>gi|153814787|ref|ZP_01967455.1| hypothetical protein RUMTOR_01002 [Ruminococcus torques ATCC 27756]
 gi|317500310|ref|ZP_07958535.1| serine-type D-Ala-D-Ala carboxypeptidase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|145847818|gb|EDK24736.1| hypothetical protein RUMTOR_01002 [Ruminococcus torques ATCC 27756]
 gi|316898251|gb|EFV20297.1| serine-type D-Ala-D-Ala carboxypeptidase [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 415

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 129/230 (56%), Gaps = 18/230 (7%)

Query: 69  FKQDEP--RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYF 126
           F+QD    R PAS+TK+MT+ +IF+ ++SKK+ L  ++PVS+ AA+   S+++L+     
Sbjct: 73  FEQDADTKRPPASVTKIMTMLLIFDAVESKKISLEDKVPVSEFAASMGGSQVFLETGETQ 132

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           T +  +  +   SAND   A  E+ISGSE+ F   M+ +AK +GM NT + N +GL  + 
Sbjct: 133 TVDTMLKCISIASANDACVAMAEYISGSEEAFVQEMNKRAKALGMHNTNFVNCNGLDAQG 192

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI------------ITNHNKLLNKM 234
            +TTARD A++   L   +PQ ++Y       +   I            +TN NKL+ + 
Sbjct: 193 HVTTARDIALMSRELITKYPQIHEY----AMTWMENITHETKKGTSEFGLTNTNKLVRQY 248

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
               G+KTG T  + F +  + +  D  ++AVVM   TS+ER   A++++
Sbjct: 249 EYATGLKTGSTGEAKFCVSATGKKDDVELIAVVMAADTSKERFADAVKMM 298


>gi|309972837|gb|ADO96038.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Haemophilus influenzae R2846]
          Length = 393

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 134/234 (57%), Gaps = 6/234 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           +++D N    +T    D+ +YPASLTKMMT Y++   L+  K+H    + + ++A  +N 
Sbjct: 42  VLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNF 101

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L   T  +       +I  S ND + A  E ISG+   F   M+   ++ G++
Sbjct: 102 PDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGLK 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           NT +    GL D NQ ++ARD AI+G  + ++ P+ YK +S + F +      N N LL 
Sbjct: 162 NTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQANRNGLLW 221

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELI 284
           +K  N+DG+KTG+T  +G+N+V S    ++  +++VVMG+PT + R+ ++ +L+
Sbjct: 222 DKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLL 275


>gi|301168630|emb|CBW28220.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Haemophilus influenzae 10810]
          Length = 393

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 134/234 (57%), Gaps = 6/234 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           +++D N    +T    D+ +YPASLTKMMT Y++   L+  K+H    + + ++A  +N 
Sbjct: 42  VLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNF 101

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L   T  +       +I  S ND + A  E ISG+   F   M+   ++ G++
Sbjct: 102 PDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGLK 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           NT +    GL D NQ ++ARD AI+G  + ++ P+ YK +S + F +      N N LL 
Sbjct: 162 NTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQPNRNGLLW 221

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELI 284
           +K  N+DG+KTG+T  +G+N+V S    ++  +++VVMG+PT + R+ ++ +L+
Sbjct: 222 DKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLL 275


>gi|145630679|ref|ZP_01786458.1| hypothetical protein CGSHi22421_02014 [Haemophilus influenzae
           R3021]
 gi|144983805|gb|EDJ91255.1| hypothetical protein CGSHi22421_02014 [Haemophilus influenzae
           R3021]
          Length = 393

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 134/234 (57%), Gaps = 6/234 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           +++D N    +T    D+ +YPASLTKMMT Y++   L+  K+H    + + ++A  +N 
Sbjct: 42  VLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNF 101

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L   T  +       +I  S ND + A  E ISG+   F   M+   ++ G++
Sbjct: 102 PDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGLK 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           NT +    GL D NQ ++ARD AI+G  + ++ P+ YK +S + F +      N N LL 
Sbjct: 162 NTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQPNRNGLLW 221

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELI 284
           +K  N+DG+KTG+T  +G+N+V S    ++  +++VVMG+PT + R+ ++ +L+
Sbjct: 222 DKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLL 275


>gi|262366391|gb|ACY62948.1| penicillin-binding protein 5 [Yersinia pestis D182038]
          Length = 335

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/237 (34%), Positives = 132/237 (55%), Gaps = 8/237 (3%)

Query: 57  IVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           I+ID N  ++      D  R PASLTKMMT Y+I + ++S K+     + V K A AT N
Sbjct: 72  ILIDYNSGKVLAEMNADTRRNPASLTKMMTSYVIGQAIKSGKIGAEDMVTVGKDAWATGN 131

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S ++LK        +    +  +S ND   A  ++++GS+  F  LM+N  K +
Sbjct: 132 PEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNLMNNYVKAL 191

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+QNT +K   GL  + Q ++ARD A++G  L ++ P  Y  +  ++F + N   TN N 
Sbjct: 192 GLQNTHFKTVHGLDAEGQFSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQTNRNG 251

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL +   N+DGIKTG+T  +G+N+V S       +++VV+G  T + R+ ++ +L+T
Sbjct: 252 LLWDTSLNVDGIKTGHTEAAGYNLVASATDGQMRLISVVLGGHTFKGRETESKKLLT 308


>gi|163803893|ref|ZP_02197734.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. AND4]
 gi|159172307|gb|EDP57194.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. AND4]
          Length = 392

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/255 (34%), Positives = 138/255 (54%), Gaps = 8/255 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
           F S +++  A ++ AK     +++D N  ++   K+   +  PASLTKMMT Y+I + L 
Sbjct: 26  FASPVVVPDAPQIAAK---GYVLMDYNSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELA 82

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              +  +  + +SK A  +N    SK++++  T          +I +S ND   A  E I
Sbjct: 83  RGNISEDDDVTISKNAWAKNFPDSSKMFIEVGTTVKVHDLNRGIIIQSGNDACVAMAEHI 142

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  F  LM+  A  IGM+NT + N  GL + N  +T  D A LG  L ++ P  Y+ 
Sbjct: 143 AGSEDAFVDLMNAWADTIGMKNTHFANVHGLDNPNLYSTPYDMAQLGKALIRDVPDEYRI 202

Query: 212 FSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL +K  N+DGIKTG+T N+G+++V+S       +VAVVMG 
Sbjct: 203 YSDKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGQMRLVAVVMGT 262

Query: 271 PTSQERDQKALELIT 285
             +  R  ++ +L++
Sbjct: 263 KDANARKSESKKLLS 277


>gi|260582057|ref|ZP_05849852.1| D-alanyl-D-alanine carboxypeptidase [Haemophilus influenzae NT127]
 gi|260094947|gb|EEW78840.1| D-alanyl-D-alanine carboxypeptidase [Haemophilus influenzae NT127]
          Length = 393

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 134/234 (57%), Gaps = 6/234 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           +++D N    +T    D+ +YPASLTKMMT Y++   L+  K+H    + + ++A  +N 
Sbjct: 42  VLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNF 101

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L   T  +       +I  S ND + A  E ISG+   F   M+   ++ G++
Sbjct: 102 PDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGLK 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           NT +    GL D NQ ++ARD AI+G  + ++ P+ YK +S + F +      N N LL 
Sbjct: 162 NTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQPNRNGLLW 221

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELI 284
           +K  N+DG+KTG+T  +G+N+V S    ++  +++VVMG+PT + R+ ++ +L+
Sbjct: 222 DKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLL 275


>gi|262168638|ref|ZP_06036333.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC27]
 gi|262022756|gb|EEY41462.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC27]
          Length = 339

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/213 (36%), Positives = 121/213 (56%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I + ++   + LN  + +SK A  +N    SK++++  T         
Sbjct: 12  PASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNR 71

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E ++G+E  F  LM+  A  +GM+N+ + N+ GL D N  +T  D
Sbjct: 72  GIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYD 131

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A+LG  L ++ P+ Y  +S +KF Y      N N LL +K  N+DGIKTG+T  +G+N+
Sbjct: 132 LALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNL 191

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           V+S    +  +VAVVMG      R  ++ +L++
Sbjct: 192 VSSATEGNMRLVAVVMGTDNENARKAESKKLLS 224


>gi|327393100|dbj|BAK10522.1| penicillin-binding protein 5 precursor DacA [Pantoea ananatis
           AJ13355]
          Length = 410

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 135/237 (56%), Gaps = 8/237 (3%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           ++ID N  ++   K  D  R PASLTKMMT Y+I + +++ K+H +  + V + A AT N
Sbjct: 57  VLIDYNSGKVLAEKNADARRDPASLTKMMTSYVIGQAVKAGKIHQDDIVTVGQDAWATGN 116

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S ++LK        Q    ++ +S ND   A  ++++GS+  F  LM+N  K +
Sbjct: 117 PVFKGSSLMFLKPGDRVPVSQLTRGIVLQSGNDACVAMADYVAGSQDAFVGLMNNYVKAL 176

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+QNT ++   GL  + Q ++ARD A++G  L ++ P+ Y  +  ++F + N    N N 
Sbjct: 177 GLQNTHFQTVHGLDAEGQYSSARDMALIGQALIRDVPEEYAVYKEKEFTFNNIRQMNRNG 236

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL +    +DGIKTG+T ++G+N+V S       +++ VMG  T + R+ ++ +L+T
Sbjct: 237 LLWDTSLTVDGIKTGHTASAGYNLVASATEGQMRLISAVMGGHTFKGRETESKKLLT 293


>gi|145636767|ref|ZP_01792433.1| hypothetical protein CGSHiHH_06620 [Haemophilus influenzae PittHH]
 gi|145270065|gb|EDK10002.1| hypothetical protein CGSHiHH_06620 [Haemophilus influenzae PittHH]
          Length = 393

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 134/234 (57%), Gaps = 6/234 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           +++D N    +T    D+ +YPASLTKMMT Y++   L+  K+H    + + ++A  +N 
Sbjct: 42  VLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNF 101

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L   T  +       +I  S ND + A  E ISG+   F   M+   ++ G++
Sbjct: 102 PDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGLK 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           NT +    GL D NQ ++ARD AI+G  + ++ P+ YK +S + F +      N N LL 
Sbjct: 162 NTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQPNRNGLLW 221

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELI 284
           +K  N+DG+KTG+T  +G+N+V S    ++  +++VVMG+PT + R+ ++ +L+
Sbjct: 222 DKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLL 275


>gi|291616674|ref|YP_003519416.1| DacA [Pantoea ananatis LMG 20103]
 gi|291151704|gb|ADD76288.1| DacA [Pantoea ananatis LMG 20103]
          Length = 418

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 142/253 (56%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   + ++ID N  ++   K  D  R PASLTKMMT Y+I + +++ K+H
Sbjct: 52  MIPGVPDIDAE---AYVLIDYNSGKVLAEKNADARRDPASLTKMMTSYVIGQAVKAGKIH 108

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            +  + V + A AT NP     S ++LK        Q    ++ +S ND   A  ++++G
Sbjct: 109 QDDIVTVGQDAWATGNPVFKGSSLMFLKPGDRVPVSQLTRGIVLQSGNDACVAMADYVAG 168

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+N  K +G+QNT ++   GL  + Q ++ARD A++G  L ++ P+ Y  + 
Sbjct: 169 SQDAFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYSSARDMALIGQALIRDVPEEYAVYK 228

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F + N    N N LL +    +DGIKTG+T ++G+N+V S       +++ VMG  T
Sbjct: 229 EKEFTFNNIRQMNRNGLLWDTSLTVDGIKTGHTASAGYNLVASATEGQMRLISAVMGGHT 288

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 289 FKGRETESKKLLT 301


>gi|254509295|ref|ZP_05121387.1| penicillin-binding protein 6 [Vibrio parahaemolyticus 16]
 gi|219547783|gb|EED24816.1| penicillin-binding protein 6 [Vibrio parahaemolyticus 16]
          Length = 293

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/213 (36%), Positives = 121/213 (56%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I + L+   + L   + +SK A  +N    SK++++  T    E    
Sbjct: 65  PASLTKMMTSYVIGQELERGNISLQDDVTISKNAWAKNFPDSSKMFIEVGTTVKVEDLNR 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E I+GSE  F  LM+  A  IGM++T + N  GL + +  +T  D
Sbjct: 125 GIIIQSGNDACVAMAEHIAGSEDAFVDLMNAWADTIGMKDTHFANVHGLDNPDLYSTPYD 184

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A+LG  L ++ P  Y+ +S +K+ Y      N N LL +K  N+DGIKTG+T N+G+++
Sbjct: 185 MALLGSALIRDVPDEYRIYSEKKYTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSL 244

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           V+S       +VAVVMG   +  R  ++ +L++
Sbjct: 245 VSSATEGKMRLVAVVMGTKNANARKSESKKLLS 277


>gi|89092035|ref|ZP_01164990.1| D-ala-D-ala-carboxypeptidase [Oceanospirillum sp. MED92]
 gi|89083770|gb|EAR62987.1| D-ala-D-ala-carboxypeptidase [Oceanospirillum sp. MED92]
          Length = 387

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 142/261 (54%), Gaps = 11/261 (4%)

Query: 36  FLSIIMISMASELHA-------KPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
           F ++++   A ++HA       +P+ ++   +V+D +  ++   K  D+P  PASLTKMM
Sbjct: 11  FYALVLTLFAIQVHAVARLIPAEPQIAATAYLVMDADTGKVIASKNADKPFAPASLTKMM 70

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T YI+   L    + L   + +S+ A     S+++++E T       +  +I +S ND S
Sbjct: 71  TAYILEYELSKGNVGLEDLVLISEKAWRTQGSRMFIREGTQVRLGDLMKGIIIQSGNDAS 130

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  E I+GSE  FA LM+  A  +GM+NT + NA+GL      ++A D A L   +  +
Sbjct: 131 VAVAEHIAGSEPAFADLMNQHADLLGMKNTNFLNATGLPADGHESSAADLATLAKAIIND 190

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           FP  Y  +S + F Y +    N NKLL +   +DG+KTGYT  +G+ +V S +     ++
Sbjct: 191 FPDLYSIYSEKYFTYNDIRQPNRNKLLWRDKTVDGMKTGYTDAAGYCLVASAKRDGMRLI 250

Query: 265 AVVMGMPTSQERDQKALELIT 285
           +VV+G    + R +++ +L++
Sbjct: 251 SVVLGTKDEEARARESQKLLS 271


>gi|192360123|ref|YP_001981301.1| D-alanyl-D-alanine carboxypeptidase family [Cellvibrio japonicus
           Ueda107]
 gi|190686288|gb|ACE83966.1| D-alanyl-D-alanine carboxypeptidase family [Cellvibrio japonicus
           Ueda107]
          Length = 405

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/247 (33%), Positives = 134/247 (54%), Gaps = 16/247 (6%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKL 98
           + I  A +L A      I++D     +   F  ++   PASLTKMM+ Y+I + L+  + 
Sbjct: 46  VAIPQAPQLAAT---GYILVDATTGSIIAEFNAEQKLPPASLTKMMSSYLIVDELEKGRY 102

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
              T +P+S  A     S++++KE T       +  +I +S ND + A  E+ SG+E  F
Sbjct: 103 QEQTLVPISVKAWQMGGSRMFVKEGTQVPLIDLLRGVIIQSGNDATVALAEYHSGNEDAF 162

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-----KYFS 213
              M+ KA ++GM NT ++N+SG   +  +TTA+D AIL   +  + P YY     KYF 
Sbjct: 163 VDRMNQKAAELGMVNTHFENSSGWPAEGHLTTAKDLAILARAIINDHPIYYPLHAEKYFV 222

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
               R RNR     N+LL +   +DG+KTG+T  +G+ +V S + ++  ++AVVMG  T+
Sbjct: 223 YNDIRQRNR-----NELLFRDETVDGLKTGHTEEAGYCLVASSKRENTRLIAVVMG--TA 275

Query: 274 QERDQKA 280
            E+ + A
Sbjct: 276 NEKARAA 282


>gi|319896451|ref|YP_004134644.1| d-alanyl-d-alanine carboxypeptidase (penicillin-binding protein 5)
           [Haemophilus influenzae F3031]
 gi|317431953|emb|CBY80301.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Haemophilus influenzae F3031]
          Length = 393

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 134/234 (57%), Gaps = 6/234 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           +++D N    +T    D+ +YPASLTKMMT Y++   L+  K+H    + + ++A  +N 
Sbjct: 42  VLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNF 101

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L   T  +       +I  S ND + A  E ISG+   F   M+   ++ G++
Sbjct: 102 PDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGLK 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           NT +    GL D NQ ++ARD AI+G  + ++ P+ YK +S + F +      N N LL 
Sbjct: 162 NTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQPNRNGLLW 221

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELI 284
           +K  N+DG+KTG+T  +G+N+V S    ++  +++VVMG+PT + R+ ++ +L+
Sbjct: 222 DKTINVDGMKTGHTSRAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLL 275


>gi|309379439|emb|CBX22006.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 388

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 132/235 (56%), Gaps = 2/235 (0%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           IVID+   Q    K  D P  PA+L ++MT Y++F+ L+S  +     + + ++A     
Sbjct: 48  IVIDLQSRQTLSAKNIDAPVEPAALAQLMTAYLVFKNLKSGNIRPEETLKIRESAWKSEG 107

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVS-TAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           S+++++      T+  +  +I  SAND + T  G   +GS + F   M+ +A+ +GM+NT
Sbjct: 108 SRMFVRPGGSVRTDTLLKGMIVLSANDAALTLAGRLGNGSIENFVKQMNEEARHLGMKNT 167

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
           ++KN +GL  + Q++TA+D A+L   L ++FP+YY  FSI+ F++ N    N N LL + 
Sbjct: 168 VFKNPTGLSREGQVSTAKDLAMLSEALMRDFPEYYPLFSIKSFKFENIEQNNRNTLLYRD 227

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
             ++G+K G+T + G+N+  S       I+ + +G  +++ R     +L+   L+
Sbjct: 228 SGVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAEIRAADTSKLLNRALQ 282


>gi|71083689|ref|YP_266409.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter
           ubique HTCC1062]
 gi|71062802|gb|AAZ21805.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 383

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/231 (35%), Positives = 133/231 (57%), Gaps = 12/231 (5%)

Query: 69  FKQDEPR--YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEK 123
           F++D  +  YPAS+TK+MT  I F+ ++S  L L+ +  VS+ A   ++   S +++   
Sbjct: 42  FEKDADKSIYPASMTKIMTAIIAFDLIRSGDLSLDEKFLVSENAWRLSSAGYSSMFIMVG 101

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
              + E  +  +I  S ND   A  E I+G+E +FA++M+ KAK+IGM NT + N+SG++
Sbjct: 102 DEVSVENLLKGIIIASGNDACVALAEGIAGTEDEFAVMMTAKAKEIGMNNTNFANSSGIN 161

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI----IT--NHNKLLNKMHNI 237
           D   ++T RD  ++   L K FP+ YKYF+ ++F + NR     IT  N N LL K    
Sbjct: 162 DTENLSTVRDIMLMSNYLIKEFPEEYKYFAEKEFTW-NRTGGDPITQGNRNPLLYKSLGA 220

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           DGIKTGY     +++ +S+      ++AV  G  T  +R +++ +L+T  L
Sbjct: 221 DGIKTGYLAVEKYSLASSVERNGRRLIAVGSGFNTKNDRSRESAKLLTWGL 271


>gi|256004001|ref|ZP_05428987.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           DSM 2360]
 gi|255992129|gb|EEU02225.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           DSM 2360]
 gi|316940572|gb|ADU74606.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           DSM 1313]
          Length = 404

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 155/285 (54%), Gaps = 8/285 (2%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           EL AK   S +++D    Q+    +   R P AS+TK+M++ ++ E + S K++++  + 
Sbjct: 50  ELQAK---SYVLMDAETGQILLENRSHERLPIASITKIMSMLLVMEAIDSGKINMDDIVT 106

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
            S+ AA+   S+ Y++    +T    + A+ T S+NDV+ +  E ++GSE+ F +LM+ K
Sbjct: 107 ASEYAASMGGSQAYIEPGEQYTVRDALKAVATHSSNDVTVSLAELVAGSEQVFVVLMNEK 166

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-- 223
           AK++GM NT + + +GL D+   +TA D A++   L    P+  ++ SI    +RN    
Sbjct: 167 AKELGMNNTNFLDCTGLTDEGHYSTAYDVALMSRELIVKHPKILEFTSIWMDTFRNGEFQ 226

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           + N NKL++     DG+KTG+TR +G  +  + +  D  +++VV+G P S  R  +  +L
Sbjct: 227 LVNTNKLVHFYEGCDGLKTGFTRAAGHCLSATAKRNDMRLISVVLGEPDSNTRFAETRKL 286

Query: 284 ITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           +         + +Q ++K  + +    K  +I K+K  Y    K+
Sbjct: 287 LDYGF--ANYESKQVNKKGEVVNEIEVKRALIPKIKALYGDDVKL 329


>gi|294142181|ref|YP_003558159.1| D-alanyl-D-alanine carboxypeptidase [Shewanella violacea DSS12]
 gi|293328650|dbj|BAJ03381.1| D-alanyl-D-alanine carboxypeptidase [Shewanella violacea DSS12]
          Length = 390

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/254 (33%), Positives = 144/254 (56%), Gaps = 8/254 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQM-TGFKQDEPRYPASLTKMMTLYIIFEYLQ 94
           + + I+  +A  + AK   + +++D N  Q+ T     E   PASLTKMMT Y+I + ++
Sbjct: 23  YAAPIVTPIAPTVAAK---AYVLMDFNTGQIITEENAYESLNPASLTKMMTSYVIGQEMK 79

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
           +  +    ++ VSK A ++N    SK++++   + T +     +I +S ND   A  E I
Sbjct: 80  AGNISPEDEVVVSKKAWSKNFPDSSKMFIEVGKHVTVDDLNHGIIIQSGNDACVAMAEHI 139

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +G+E  F  LM++ AK++GM+++ ++NA GL   N  +TA D AILG  L ++ P+ Y  
Sbjct: 140 AGTEDGFVDLMNSWAKQLGMKDSHFENAHGLDATNHKSTAYDMAILGAALIRDVPKEYTL 199

Query: 212 FSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S + F Y      N N LL +K   +DGIKTG+T  +G+N+VTS       +V+VVMG 
Sbjct: 200 YSQKSFTYNGIKQYNRNGLLWDKSMKVDGIKTGHTSGAGYNLVTSATKDGMRLVSVVMGT 259

Query: 271 PTSQERDQKALELI 284
            +   R  ++ +L+
Sbjct: 260 RSESARKAESKKLL 273


>gi|283851675|ref|ZP_06368954.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp.
           FW1012B]
 gi|283573005|gb|EFC20986.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp.
           FW1012B]
          Length = 362

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 116/209 (55%), Gaps = 1/209 (0%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK++TLYIIF+ ++  KL     + VS+ AATQ  S + L+          I  + 
Sbjct: 122 PASLTKILTLYIIFDAIRQGKLRPWDVVDVSERAATQGGSTMRLRNGESVKVTDMIKGIA 181

Query: 137 TRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
             SAND   A  +++ G     F  LM++ AK++GM N+++ N +GL  + Q+TTARD  
Sbjct: 182 VASANDACMAMADYLEGGNVDAFVALMNDTAKRLGMSNSVFMNPNGLPAEGQLTTARDML 241

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
            L     + FP+     S++ F + NR   N N LL      DG+KTG+   SG+NIV +
Sbjct: 242 RLASAYLEQFPKALSIHSLQFFSHNNRQRHNANSLLASYEGCDGLKTGFVCASGYNIVAT 301

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +  D  ++AVV+G  + + R ++  +L+
Sbjct: 302 AKRGDTRLIAVVLGSRSPRVRQRETAKLL 330


>gi|260434140|ref|ZP_05788111.1| beta-lactamase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417968|gb|EEX11227.1| beta-lactamase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 388

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 125/228 (54%), Gaps = 9/228 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D+P  PAS++K+MTLY+ FE L+  +L L+ ++PVS+ A +   S ++L  +     E  
Sbjct: 48  DQPLPPASMSKLMTLYVAFEALRDGRLTLDEKLPVSEHAMSYGGSTMFLNTQDRVRVEDL 107

Query: 132 ILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           +  +I  S ND      E +S  G+E  FA  M+ +AK++GM N+ + N++G      + 
Sbjct: 108 LRGIIVLSGNDACVVIAEALSPDGTEAGFARYMTQRAKQMGMNNSTFANSNGWPAAGHMM 167

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI---ITNHNKLLNKMHNIDGIKTGYTR 246
           + +D AIL   L  +FP+YY  F+   F +  R    + N N LL      DG+KTG+T+
Sbjct: 168 SVKDLAILADRLITDFPEYYPLFAEETFEFDGRAPSNVNNRNPLLKLDIGADGLKTGHTQ 227

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT----SFLEK 290
            +G+ +V S +  D  ++ V+ G+     R ++A  ++     +F+E+
Sbjct: 228 EAGYGLVGSAKQGDRRVIFVLSGLENVARRAEEAEAVVNWSFRNFVER 275


>gi|125973197|ref|YP_001037107.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           ATCC 27405]
 gi|281417396|ref|ZP_06248416.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           JW20]
 gi|125713422|gb|ABN51914.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           ATCC 27405]
 gi|281408798|gb|EFB39056.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           JW20]
          Length = 404

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 155/285 (54%), Gaps = 8/285 (2%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           EL AK   S +++D    Q+    +   R P AS+TK+M++ ++ E + S K++++  + 
Sbjct: 50  ELQAK---SYVLMDAETGQILLENRSHERLPIASITKIMSMLLVMEAIDSGKINMDDIVT 106

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
            S+ AA+   S+ Y++    +T    + A+ T S+NDV+ +  E ++GSE+ F +LM+ K
Sbjct: 107 ASEYAASMGGSQAYIEPGEQYTVRDALKAVATHSSNDVTVSLAELVAGSEQVFVVLMNEK 166

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-- 223
           AK++GM NT + + +GL D+   +TA D A++   L    P+  ++ SI    +RN    
Sbjct: 167 AKELGMNNTNFLDCTGLTDEGHYSTAYDVALMSRELIVKHPKILEFTSIWMDTFRNGEFQ 226

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           + N NKL++     DG+KTG+TR +G  +  + +  D  +++VV+G P S  R  +  +L
Sbjct: 227 LVNTNKLVHFYEGCDGLKTGFTRAAGHCLSATAKRNDMRLISVVLGEPDSNTRFAETRKL 286

Query: 284 ITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           +         + +Q ++K  + +    K  +I K+K  Y    K+
Sbjct: 287 LDYGF--ANYESKQVNKKGEVVNEIEVKRALIPKIKALYGDDVKL 329


>gi|329123117|ref|ZP_08251687.1| D-alanyl-D-alanine carboxypeptidase DacA [Haemophilus aegyptius
           ATCC 11116]
 gi|327471672|gb|EGF17114.1| D-alanyl-D-alanine carboxypeptidase DacA [Haemophilus aegyptius
           ATCC 11116]
          Length = 393

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 134/234 (57%), Gaps = 6/234 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           +++D N    +T    D+ +YPASLTKMMT Y++   L+  K+H    + + ++A  +N 
Sbjct: 42  VLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNF 101

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L   T  +       +I  S ND + A  E ISG+   F   M+   ++ G++
Sbjct: 102 PDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGLK 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           NT +    GL D NQ ++ARD AI+G  + ++ P+ YK +S + F +      N N LL 
Sbjct: 162 NTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQPNRNGLLW 221

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELI 284
           +K  N+DG+KTG+T  +G+N+V S    ++  +++VVMG+PT + R+ ++ +L+
Sbjct: 222 DKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLL 275


>gi|22125078|ref|NP_668501.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis KIM
           10]
 gi|45440942|ref|NP_992481.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108808491|ref|YP_652407.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis
           Antiqua]
 gi|108811250|ref|YP_647017.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis
           Nepal516]
 gi|145599915|ref|YP_001163991.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis
           Pestoides F]
 gi|149365498|ref|ZP_01887533.1| putative penicillin-binding protein 5 [Yersinia pestis CA88-4125]
 gi|162419741|ref|YP_001606339.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis
           Angola]
 gi|165937675|ref|ZP_02226237.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008297|ref|ZP_02229195.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|167398703|ref|ZP_02304227.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167423578|ref|ZP_02315331.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468426|ref|ZP_02333130.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis FV-1]
 gi|170025245|ref|YP_001721750.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia
           pseudotuberculosis YPIII]
 gi|186894472|ref|YP_001871584.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia
           pseudotuberculosis PB1/+]
 gi|218929682|ref|YP_002347557.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis
           CO92]
 gi|229838147|ref|ZP_04458306.1| putative penicillin-binding protein 5 [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229895938|ref|ZP_04511108.1| putative penicillin-binding protein 5 [Yersinia pestis Pestoides A]
 gi|229898742|ref|ZP_04513887.1| putative penicillin-binding protein 5 [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229901487|ref|ZP_04516609.1| putative penicillin-binding protein 5 [Yersinia pestis Nepal516]
 gi|270489672|ref|ZP_06206746.1| serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pestis KIM D27]
 gi|294504405|ref|YP_003568467.1| putative penicillin-binding protein 5 [Yersinia pestis Z176003]
 gi|21957931|gb|AAM84752.1|AE013720_16 D-alanyl-D-alanine carboxypeptidase, fraction A [Yersinia pestis
           KIM 10]
 gi|45435801|gb|AAS61358.1| putative penicillin-binding protein 5 [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108774898|gb|ABG17417.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Yersinia pestis Nepal516]
 gi|108780404|gb|ABG14462.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Yersinia pestis Antiqua]
 gi|115348293|emb|CAL21224.1| putative penicillin-binding protein 5 [Yersinia pestis CO92]
 gi|145211611|gb|ABP41018.1| penicillin-binding protein 5 [Yersinia pestis Pestoides F]
 gi|149291911|gb|EDM41985.1| putative penicillin-binding protein 5 [Yersinia pestis CA88-4125]
 gi|162352556|gb|ABX86504.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Angola]
 gi|165914425|gb|EDR33040.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165992679|gb|EDR44980.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|167051207|gb|EDR62615.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057748|gb|EDR67494.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169751779|gb|ACA69297.1| Serine-type D-Ala-D-Ala carboxypeptidase [Yersinia
           pseudotuberculosis YPIII]
 gi|186697498|gb|ACC88127.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Yersinia
           pseudotuberculosis PB1/+]
 gi|229681416|gb|EEO77510.1| putative penicillin-binding protein 5 [Yersinia pestis Nepal516]
 gi|229688290|gb|EEO80361.1| putative penicillin-binding protein 5 [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694513|gb|EEO84560.1| putative penicillin-binding protein 5 [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229700861|gb|EEO88890.1| putative penicillin-binding protein 5 [Yersinia pestis Pestoides A]
 gi|262362606|gb|ACY59327.1| putative penicillin-binding protein 5 [Yersinia pestis D106004]
 gi|270338176|gb|EFA48953.1| serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pestis KIM D27]
 gi|294354864|gb|ADE65205.1| putative penicillin-binding protein 5 [Yersinia pestis Z176003]
 gi|320016196|gb|ADV99767.1| putative penicillin-binding protein 5 [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 400

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/237 (34%), Positives = 132/237 (55%), Gaps = 8/237 (3%)

Query: 57  IVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           I+ID N  ++      D  R PASLTKMMT Y+I + ++S K+     + V K A AT N
Sbjct: 47  ILIDYNSGKVLAEMNADTRRNPASLTKMMTSYVIGQAIKSGKIGAEDMVTVGKDAWATGN 106

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S ++LK        +    +  +S ND   A  ++++GS+  F  LM+N  K +
Sbjct: 107 PEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNLMNNYVKAL 166

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+QNT +K   GL  + Q ++ARD A++G  L ++ P  Y  +  ++F + N   TN N 
Sbjct: 167 GLQNTHFKTVHGLDAEGQFSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQTNRNG 226

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL +   N+DGIKTG+T  +G+N+V S       +++VV+G  T + R+ ++ +L+T
Sbjct: 227 LLWDTSLNVDGIKTGHTEAAGYNLVASATDGQMRLISVVLGGHTFKGRETESKKLLT 283


>gi|37679087|ref|NP_933696.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus YJ016]
 gi|37197829|dbj|BAC93667.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus YJ016]
          Length = 393

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/213 (37%), Positives = 119/213 (55%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I + L+   + L   + VSK A  +N    SK++++  T    +    
Sbjct: 66  PASLTKMMTSYVIGQELERGNISLEDDVVVSKNAWAKNFPDSSKMFIEVGTTVKVKDLNR 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E I+GSE  F  LM+  A  IGM NT + N  GL + N  +T  D
Sbjct: 126 GIIIQSGNDACVAMAEHIAGSEDAFVDLMNAWASSIGMTNTHFANVHGLDNANLYSTPYD 185

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A+LG  L ++ P  Y+ +S +KF Y      N N LL +K  N+DGIKTG+T N+G+++
Sbjct: 186 MALLGQALIRDVPDEYRIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSL 245

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           V+S       ++AVVMG      R  ++ +L++
Sbjct: 246 VSSATEGKMRLIAVVMGTKDMNARKSESKKLLS 278


>gi|291541617|emb|CBL14727.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus bromii L2-63]
          Length = 382

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/214 (35%), Positives = 122/214 (57%), Gaps = 3/214 (1%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           E R  AS+TK+MTL ++FE + S KL L+ +I  S+ AA    S ++L++    + +  I
Sbjct: 56  EQRPCASVTKIMTLLLVFEAVDSGKLSLDDEITASEHAAGMGGSDIWLEKGETMSADDMI 115

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
            A +  SAND + A  E ISG E  F   M+++AK++GM +T++KN +GL ++  IT+A 
Sbjct: 116 KATVVVSANDAAVALAEHISGGEDAFVEKMNSRAKELGMNDTVFKNCNGLDEEGHITSAY 175

Query: 193 DQAILGILLRKNFPQYYKYFSI--RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           D A++   L K+  + + Y SI     R     I N NKLL   + I G+KTG T ++G 
Sbjct: 176 DVALMSRELTKH-EKIFDYTSIWLDNLRGGKTQIVNTNKLLKTYNGITGLKTGTTNDAGC 234

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +  +    D  +++VV+G  T +ER   A  L+
Sbjct: 235 CMSATATRGDVSLISVVLGCKTGKERFADAAALL 268


>gi|281500691|pdb|3A3J|A Chain A, Crystal Structures Of Penicillin Binding Protein 5 From
           Haemophilus Influenzae
          Length = 344

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 134/234 (57%), Gaps = 6/234 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           +++D N    +T    D+ +YPASLTKMMT Y++   L+  K+H    + + ++A  +N 
Sbjct: 13  VLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNF 72

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L   T  +       +I  S ND + A  E ISG+   F   M+   ++ G++
Sbjct: 73  PDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGLK 132

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           NT +    GL D NQ ++ARD AI+G  + ++ P+ YK +S + F +      N N LL 
Sbjct: 133 NTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQPNRNGLLW 192

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELI 284
           +K  N+DG+KTG+T  +G+N+V S    ++  +++VVMG+PT + R+ ++ +L+
Sbjct: 193 DKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLL 246


>gi|260777151|ref|ZP_05886045.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606817|gb|EEX33091.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 388

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 132/234 (56%), Gaps = 5/234 (2%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           ++ID N  Q+   K    +  PASLTK+MT Y+  + +++  + L+ Q+ +SK A  +N 
Sbjct: 40  VLIDYNTGQVLVEKNANTKLNPASLTKLMTAYVAGQEVKAGNITLDDQVVISKNAWAKNF 99

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++++  T          LI +S ND S A  E+++GSE  F  LM++ A+K+G++
Sbjct: 100 PDSSKMFIEVGTTVPLMDLYRGLIVQSGNDASVAIAEYVAGSEGAFVNLMNSWAEKLGLE 159

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           NT Y N  GL      +T  D A LG  + ++ P  Y  +S   + Y      N N LL 
Sbjct: 160 NTAYTNPHGLDSNGLYSTPMDIAKLGQAIIRDLPDIYPLYSETSYTYNGITQYNRNGLLR 219

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           ++  N+DG+KTGYT  +G+++ TS    D  ++AVVMG  +++ R+ ++ +L++
Sbjct: 220 DRSMNVDGMKTGYTSGAGYSLTTSATSGDMRLIAVVMGASSTKSRESESKQLLS 273


>gi|165925339|ref|ZP_02221171.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|166212479|ref|ZP_02238514.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167422579|ref|ZP_02314332.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|165922946|gb|EDR40097.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|166206410|gb|EDR50890.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166958593|gb|EDR55614.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
          Length = 380

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/237 (34%), Positives = 132/237 (55%), Gaps = 8/237 (3%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           I+ID N  + +     D  R PASLTKMMT Y+I + ++S K+     + V K A AT N
Sbjct: 27  ILIDYNSGKVLAEMNADTRRNPASLTKMMTSYVIGQAIKSGKIGAEDMVTVGKDAWATGN 86

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S ++LK        +    +  +S ND   A  ++++GS+  F  LM+N  K +
Sbjct: 87  PEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNLMNNYVKAL 146

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+QNT +K   GL  + Q ++ARD A++G  L ++ P  Y  +  ++F + N   TN N 
Sbjct: 147 GLQNTHFKTVHGLDAEGQFSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQTNRNG 206

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL +   N+DGIKTG+T  +G+N+V S       +++VV+G  T + R+ ++ +L+T
Sbjct: 207 LLWDTSLNVDGIKTGHTEAAGYNLVASATDGQMRLISVVLGGHTFKGRETESKKLLT 263


>gi|27363759|ref|NP_759287.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus CMCP6]
 gi|320157161|ref|YP_004189540.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus MO6-24/O]
 gi|27359875|gb|AAO08814.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus CMCP6]
 gi|319932473|gb|ADV87337.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus MO6-24/O]
          Length = 393

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/213 (37%), Positives = 119/213 (55%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I + L+   + L   + VSK A  +N    SK++++  T    +    
Sbjct: 66  PASLTKMMTSYVIGQELERGNISLEDDVVVSKNAWAKNFPDSSKMFIEVGTTVKVKDLNR 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E I+GSE  F  LM+  A  IGM NT + N  GL + N  +T  D
Sbjct: 126 GIIIQSGNDACVAMAEHIAGSEDAFVDLMNAWASSIGMTNTHFANVHGLDNANLYSTPYD 185

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A+LG  L ++ P  Y+ +S +KF Y      N N LL +K  N+DGIKTG+T N+G+++
Sbjct: 186 MALLGQALIRDVPDEYRIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSL 245

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           V+S       ++AVVMG      R  ++ +L++
Sbjct: 246 VSSATEGKMRLIAVVMGTKDMNARKSESKKLLS 278


>gi|259415214|ref|ZP_05739136.1| serine-type D-Ala-D-Ala carboxypeptidase [Silicibacter sp.
           TrichCH4B]
 gi|259349124|gb|EEW60878.1| serine-type D-Ala-D-Ala carboxypeptidase [Silicibacter sp.
           TrichCH4B]
          Length = 393

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 135/246 (54%), Gaps = 9/246 (3%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A E  A+  Y   V+D   N +   K  D P  PAS++K+MTLY+ FE ++  +L ++ +
Sbjct: 28  AFETKARAAY---VVDQGTNTVLLSKNADVPMPPASMSKLMTLYVAFEAVRDGRLTMDER 84

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAIL 161
           +PVS+ A +   S ++L        E  +  +I  S ND      E +S  G+E  FA  
Sbjct: 85  LPVSEHAMSYKGSTMFLDTTDRVRVEDLLRGIIVLSGNDACAVIAEALSPDGTEAGFARY 144

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           M+ +A+++GM  + + N++G  D+    + RD AIL   L ++FP++Y  FS ++F +  
Sbjct: 145 MTRRARELGMSESTFMNSNGWPDQGHEMSVRDLAILAEHLIEDFPEFYPMFSEQEFAFDG 204

Query: 222 RIIT---NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           R  +   N N LL      DG+KTG+T+ +G+ +V S +  D  ++ V+ GM ++ ER +
Sbjct: 205 RAPSNTRNRNPLLQLDIGADGLKTGHTQEAGYGLVGSAKQGDRRVIFVISGMNSTPERAE 264

Query: 279 KALELI 284
           ++  ++
Sbjct: 265 ESEAIV 270


>gi|293375491|ref|ZP_06621770.1| putative D-alanyl-D-alanine carboxypeptidase [Turicibacter
           sanguinis PC909]
 gi|292645891|gb|EFF63922.1| putative D-alanyl-D-alanine carboxypeptidase [Turicibacter
           sanguinis PC909]
          Length = 389

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/213 (34%), Positives = 122/213 (57%), Gaps = 5/213 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TKMM++Y+I E + +  L  +  I VS+ AA+   S++YLK            ++ 
Sbjct: 59  PASMTKMMSMYLILESIHNGALQWDEVIRVSENAASYGGSQIYLKPGEKMIVRDLFKSIA 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             SAND  TA  E ++GSE+ F  LM+ KAK++GM NT++KN +GL     +TT  D +I
Sbjct: 119 IASANDSVTALAERVAGSEEAFVELMNQKAKELGMNNTVFKNPTGLTAAGHVTTPYDMSI 178

Query: 197 LGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +   L +++P+  ++       IR+       + N NKL+  +  +DG+KTG+T+ +G+ 
Sbjct: 179 IARHLLQDYPEITEFSGLYEDYIRQDTESPFWLVNTNKLIKYVDGVDGLKTGFTQEAGYC 238

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +  + +     ++AVVMG   S+ R+Q+   LI
Sbjct: 239 LTATAQRNGMRVIAVVMGASKSEIRNQEVTRLI 271


>gi|261212007|ref|ZP_05926293.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC341]
 gi|260838615|gb|EEX65266.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC341]
          Length = 347

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/212 (36%), Positives = 120/212 (56%), Gaps = 4/212 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I + ++   + LN  + +SK A  +N    SK++++  T         
Sbjct: 20  PASLTKMMTSYVIGQEIKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNR 79

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E ++GSE  F  LM+  A  +GM+N+ + NA GL + N  +T  D
Sbjct: 80  GIIIQSGNDACVAMAEHVAGSEDAFVDLMNAWASSLGMKNSHFTNAHGLDNPNLYSTPYD 139

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A+LG  L ++ P  Y  +S +KF Y      N N LL +K  N+DGIKTG+T  +G+N+
Sbjct: 140 LALLGQALIRDVPDEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNL 199

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           V+S    +  +VAVVMG  +   R  ++ +L+
Sbjct: 200 VSSATEGNMRLVAVVMGTDSENARKAESKKLL 231


>gi|91763271|ref|ZP_01265235.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91717684|gb|EAS84335.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 393

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/231 (35%), Positives = 133/231 (57%), Gaps = 12/231 (5%)

Query: 69  FKQDEPR--YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEK 123
           F++D  +  YPAS+TK+MT  I F+ ++S  L L+ +  VS+ A   ++   S +++   
Sbjct: 52  FEKDADKSIYPASMTKIMTAIIAFDLIRSGDLSLDEKFLVSENAWRLSSAGYSSMFIMVG 111

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
              + E  +  +I  S ND   A  E I+G+E +FA++M+ KAK+IGM NT + N+SG++
Sbjct: 112 DEVSVENLLKGIIIASGNDACVALAEGIAGTEDEFAVMMTAKAKEIGMNNTNFANSSGIN 171

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI----IT--NHNKLLNKMHNI 237
           D   ++T RD  ++   L K FP+ YKYF+ ++F + NR     IT  N N LL K    
Sbjct: 172 DTENLSTVRDIMLMSNYLIKEFPEEYKYFAEKEFTW-NRTGGDPITQGNRNPLLYKSLGA 230

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           DGIKTGY     +++ +S+      ++AV  G  T  +R +++ +L+T  L
Sbjct: 231 DGIKTGYLAVEKYSLASSVERNGRRLIAVGSGFNTKNDRSRESAKLLTWGL 281


>gi|90406825|ref|ZP_01215017.1| putative D-alanyl-D-alanine carboxypeptidase [Psychromonas sp.
           CNPT3]
 gi|90312062|gb|EAS40155.1| putative D-alanyl-D-alanine carboxypeptidase [Psychromonas sp.
           CNPT3]
          Length = 385

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 131/226 (57%), Gaps = 7/226 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT YII   L+   +H + ++ +S+ A ++N    SK++++     + +    
Sbjct: 57  PASLTKMMTSYIIGNELKVGNIHRDDKVLISEKAWSKNFPESSKMFIEVGKEVSVDDLNH 116

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E+I+GSE  F  LM++ A ++GM NT + N+ GL+ K+  TTA+D
Sbjct: 117 GIIIQSGNDACVAMAEYIAGSEGAFVDLMNSWAIQLGMNNTHFMNSHGLNAKDHYTTAQD 176

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A L   L ++ P+ YK +S + F+Y      N N LL +K  N+DG+KTG+T  +G+++
Sbjct: 177 MATLAKALIRDLPEEYKLYSKKSFKYNGIEQYNRNGLLWDKSLNVDGLKTGHTDAAGYSL 236

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERD---QKALELITSFLEKKTLKH 295
           V+S    D  +++VVMG  +S  R+   +K L     F E  T  H
Sbjct: 237 VSSAVKGDMRLISVVMGTRSSTARNVESKKILNWGFRFFETLTPYH 282


>gi|188025727|ref|ZP_02959597.2| hypothetical protein PROSTU_01468 [Providencia stuartii ATCC 25827]
 gi|188020262|gb|EDU58302.1| hypothetical protein PROSTU_01468 [Providencia stuartii ATCC 25827]
          Length = 402

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/251 (33%), Positives = 141/251 (56%), Gaps = 11/251 (4%)

Query: 46  SELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           S + A P+  +   I+ID N  ++   K  D+ R PASLTKMMT Y+I + ++S K+   
Sbjct: 35  SPVPAVPEIDAEAYILIDYNSGKVLAEKNADQRRDPASLTKMMTSYVIGQAIKSGKIGAE 94

Query: 102 TQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
             + V++ A AT NP     S ++LK     +  Q    +  +S ND   A  ++++G +
Sbjct: 95  DIVTVNEDAWATGNPIFKGSSLMFLKPGDRVSVSQLTRGINLQSGNDACVAMADYVAGDQ 154

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             F  LM+    K+G+QNT ++   GL  + Q ++ARD A+LG  L ++ P  Y  +  +
Sbjct: 155 ANFIQLMNGYVSKLGLQNTHFQTVHGLDAEGQYSSARDMALLGQALIRDVPDEYAIYKEK 214

Query: 216 KFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           +F + N   TN N LL +K  ++DGIKTG+T  +G+N+V S       +++VVMG  + +
Sbjct: 215 EFTFNNIRQTNRNGLLWDKSLSVDGIKTGHTNAAGYNLVASATEGQMRLISVVMGGKSMK 274

Query: 275 ERDQKALELIT 285
            RD ++ +L+T
Sbjct: 275 GRDAESKKLLT 285


>gi|167856207|ref|ZP_02478943.1| D-alanyl-D-alanine carboxypeptidase fraction A [Haemophilus
           parasuis 29755]
 gi|167852662|gb|EDS23940.1| D-alanyl-D-alanine carboxypeptidase fraction A [Haemophilus
           parasuis 29755]
          Length = 393

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 137/244 (56%), Gaps = 6/244 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-- 113
           I++D N    +     D+ + PASLTKMMT Y++ E L++ K+  +  + V++ +  Q  
Sbjct: 43  ILMDYNSGAVLASLNPDQHQAPASLTKMMTSYVVGEALKTGKIKNSDLVTVTENSWGQKF 102

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L      + E     +I  S ND   A  E ISGSE+ F   M+   +K G++
Sbjct: 103 PGSSKMFLNVNQQVSVEDLNKGIIVVSGNDACVAIAEHISGSEQTFIDSMNKFVQKFGLK 162

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           NT +    GL    Q ++ARD AI+G  + ++ P+ YK +S ++F Y      N N LL 
Sbjct: 163 NTHFATVHGLDHPEQYSSARDMAIIGAHIIRDLPEEYKIYSEKEFTYNKITQPNRNGLLW 222

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI-TSFLEK 290
           +K  N+DG+KTG+T  +G+N+V S    +  +++VVMG+PT + R+ ++ +L+   F   
Sbjct: 223 DKSINVDGMKTGHTDQAGYNLVASAYNSNTRLISVVMGVPTYKGREVESKKLLQWGFANF 282

Query: 291 KTLK 294
           +T+K
Sbjct: 283 ETVK 286


>gi|317121980|ref|YP_004101983.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591960|gb|ADU51256.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           marianensis DSM 12885]
          Length = 438

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 130/236 (55%), Gaps = 9/236 (3%)

Query: 57  IVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V+D    ++   K  DEPR+PAS++K+MTL +  E +Q+ ++ L  Q+ VS  A     
Sbjct: 89  LVMDAASGRVLWAKNADEPRHPASISKLMTLLLTLEAIQAGQIRLQDQVTVSPRAQGTPG 148

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S  +L+     T E  I A+   SAND   A  E+ISG   +F   M+ +A+++G+  T 
Sbjct: 149 STAFLEVGERITVEDLIKAVAVASANDACVALAEYISGDVGRFVQRMNRRAQELGLTRTR 208

Query: 176 YKNASGLHDK--NQITTARDQAILGILLRKNFPQYYKYFSI-----RKFRYRNRIITNHN 228
           + +  GL D+  N++ +ARD A+L   + +  P+  +Y SI     RK   R   +TN N
Sbjct: 209 FVDPHGLTDQPGNRM-SARDIAVLSRYMIQYHPEILRYTSIWEDWLRKGTDREFWLTNTN 267

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           KL+     +DG+KTG T  SG ++V + R  DD  + VV+G P S  R ++A  L+
Sbjct: 268 KLVAWYEGVDGLKTGLTDESGPSVVVTARKGDDRFIVVVLGSPDSNTRWREASRLL 323


>gi|32490923|ref|NP_871177.1| hypothetical protein WGLp174 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166129|dbj|BAC24320.1| dacA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 410

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/239 (35%), Positives = 135/239 (56%), Gaps = 8/239 (3%)

Query: 55  SSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S I+ID    Q+      D  R PASLTKMMT YII  Y++S  +  +  + +SK +   
Sbjct: 54  SYILIDYYSGQVLAEMNADSKRLPASLTKMMTSYIIGMYIKSGHIKSSDLVKISKESWML 113

Query: 113 QNPS-----KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
            NPS      ++LK     +       +I +S ND   A   +ISG+++ F  LM+N AK
Sbjct: 114 GNPSLKGSSSMFLKPGDLVSISDLSRGIILQSGNDACVAIANYISGNQESFVELMNNYAK 173

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-RIITN 226
           K+ ++NT +KN  GL +  Q T+ARD +I+G  L K+  + Y  +  ++F Y N R +  
Sbjct: 174 KLKLKNTHFKNVHGLDNAGQFTSARDMSIIGTYLIKDVHEEYIKYKEKEFTYNNIRQLNR 233

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +N L +K  N+DGIKTG+T+ +G+N+V S   ++  +++V++G  +  ERD  +  L+ 
Sbjct: 234 NNLLWDKTLNVDGIKTGHTKLAGYNLVASAINENMRLISVILGGRSINERDNGSKSLLN 292


>gi|227112044|ref|ZP_03825700.1| penicillin-binding protein 6 [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 401

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 146/266 (54%), Gaps = 11/266 (4%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTL 86
           +G +L + ++  + A +L A P+  +   I+ID +  + +     DE   PASLTK+M  
Sbjct: 15  VGTVLLVGLVPFTYAEQLPAVPQIDAKAYILIDHHSGKVLAESNADERLDPASLTKIMAS 74

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSA 140
           Y+I + ++S K+    ++ V K A AT NP     S ++LK        +    ++ +S 
Sbjct: 75  YVIGQAIKSGKIRPTDEVTVGKDAWATGNPALRGSSLMFLKPGDRIPVSELNKGIVIQSG 134

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND S A  ++++GS+  F  LM+N AK + + NT ++   GL    Q +TARD A+LG  
Sbjct: 135 NDASIALADYVAGSQDAFVSLMNNYAKALNLTNTNFRTVHGLDAPGQYSTARDMALLGQA 194

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYK 259
           L ++ P+ Y     ++F + N    N N+LL   + N+DG+KTG+T  +G N+V S    
Sbjct: 195 LIRDVPEEYALHKEKEFTFNNIRQPNRNRLLWSTNLNVDGVKTGHTSGAGHNLVASATEG 254

Query: 260 DDPIVAVVMGMPTSQERDQKALELIT 285
           +  +++VV+G  T   R +++ +L+T
Sbjct: 255 NMRLISVVLGAQTDAIRFRESEKLLT 280


>gi|212636662|ref|YP_002313187.1| D-alanyl-D-alanine carboxypeptidase [Shewanella piezotolerans WP3]
 gi|212558146|gb|ACJ30600.1| D-alanyl-D-alanine carboxypeptidase [Shewanella piezotolerans WP3]
          Length = 421

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 132/233 (56%), Gaps = 5/233 (2%)

Query: 57  IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           +++D N  Q+       E   PASLTKMMT Y+I   ++   +  + ++ +SK A ++N 
Sbjct: 72  VLLDYNTGQIIAENNAYESLNPASLTKMMTSYVIGHEIKVGNVSPSDEVTISKNAWSKNF 131

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++++     + E+    +I +S ND   A  E I+G+E  F  LM++ AK++GMQ
Sbjct: 132 PDSSKMFIEVGKTVSVEELNKGIIIQSGNDACVAMAEHIAGTEDGFVDLMNSWAKQLGMQ 191

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           ++ ++N+ GL   N  TTA D AILG  + ++ P+ Y  +  + F Y      N N LL 
Sbjct: 192 DSYFENSHGLDSDNHKTTAYDMAILGAAIIRDVPEEYAVYKEKSFTYNGIKQYNRNGLLW 251

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +K  N+DGIKTG+T  +G+N+VTS       +++VVMG  +   R  ++ +L+
Sbjct: 252 DKSLNVDGIKTGHTSGAGYNLVTSATKDGMRLISVVMGTKSETARKAESKKLL 304


>gi|301154770|emb|CBW14233.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Haemophilus parainfluenzae T3T1]
          Length = 395

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 154/286 (53%), Gaps = 17/286 (5%)

Query: 33  KILFLSIIM----ISMASELH---AKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLT 81
           KI+  S +M     + A +L    A P+ ++   +++D N    +     D+ +YPASLT
Sbjct: 10  KIVLFSGLMAASTFAAAEDLQYGIAVPEVNAQTYVLMDYNSGAVLASLNPDQRQYPASLT 69

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITR 138
           KMMT Y++   L+  K+H    + + ++A  +N    SK++L      +       +I  
Sbjct: 70  KMMTSYVVGAALKQGKIHNEDMVTIGESAWGRNFPDSSKMFLNLNQQVSVGDLNKGIIIV 129

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND   A  E ISG+   F   M+   ++ G++NT +    GL D NQ +TARD AI+G
Sbjct: 130 SGNDACVAVAEHISGTVANFVDTMNKYVQQFGLKNTNFTTPHGLDDPNQYSTARDMAIIG 189

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLR 257
             + ++ P+ YK ++ + F +      N N LL +K  N+DG+KTG+T  +G+N+V S  
Sbjct: 190 AHIIRDLPEEYKIYAEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASAT 249

Query: 258 YKDD-PIVAVVMGMPTSQERDQKALELI-TSFLEKKTLKHQQTHRK 301
             ++  +++VVMG+PT + R+ ++ +L+   F   +TLK  + + K
Sbjct: 250 SPNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETLKAHKANEK 295


>gi|219871407|ref|YP_002475782.1| D-alanyl-D-alanine carboxypeptidase fraction A/penicillin-binding
           protein 5 [Haemophilus parasuis SH0165]
 gi|219691611|gb|ACL32834.1| D-alanyl-D-alanine carboxypeptidase fraction A/penicillin-binding
           protein 5 [Haemophilus parasuis SH0165]
          Length = 393

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 137/244 (56%), Gaps = 6/244 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-- 113
           I++D N    +     D+ + PASLTKMMT Y++ E L++ K+  +  + V++ +  Q  
Sbjct: 43  ILMDYNSGAVLASLNPDQRQAPASLTKMMTSYVVGEALKTGKIKNSDLVTVTENSWGQKF 102

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L      + E     +I  S ND   A  E ISGSE+ F   M+   +K G++
Sbjct: 103 PGSSKMFLNVNQQVSVEDLNKGIIVVSGNDACVAIAEHISGSEQTFIDSMNKFVQKFGLK 162

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           NT +    GL    Q ++ARD AI+G  + ++ P+ YK +S ++F Y      N N LL 
Sbjct: 163 NTHFATVHGLDHPEQYSSARDMAIIGAHIIRDLPEEYKIYSEKEFTYNKITQPNRNGLLW 222

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI-TSFLEK 290
           +K  N+DG+KTG+T  +G+N+V S    +  +++VVMG+PT + R+ ++ +L+   F   
Sbjct: 223 DKSINVDGMKTGHTDQAGYNLVASAYNSNTRLISVVMGVPTYKGREVESKKLLQWGFANF 282

Query: 291 KTLK 294
           +T+K
Sbjct: 283 ETVK 286


>gi|148653555|ref|YP_001280648.1| Serine-type D-Ala-D-Ala carboxypeptidase [Psychrobacter sp. PRwf-1]
 gi|148572639|gb|ABQ94698.1| Serine-type D-Ala-D-Ala carboxypeptidase [Psychrobacter sp. PRwf-1]
          Length = 413

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/234 (35%), Positives = 128/234 (54%), Gaps = 9/234 (3%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           Y + VI   KN       D+P  PASLTKMMT +II + L S ++     + ++++A   
Sbjct: 70  YDTGVILAEKNA------DQPLPPASLTKMMTSHIIEKKLMSGEMKETDPVLMTESAWCR 123

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            T + S +Y+           +  +I +S ND S A  E I+GSE  FA +M+ +AK +G
Sbjct: 124 GTSDQSCMYVPVNKSAPAIDMLRGIIIQSGNDASKAMAEHIAGSESAFAQIMNAEAKALG 183

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M NT + NA+G+ D+    +ARD AIL   + K    YYK +S ++F Y N    N N L
Sbjct: 184 MTNTHFVNATGMPDEGHRASARDLAILSRAIIKQGGDYYKLYSEKEFTYNNITQGNRNAL 243

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           L     +DG+KTG+T  +G+ +  S +  D  +++V+MG  + Q R  ++ EL+
Sbjct: 244 LRTDPTVDGLKTGHTDAAGYCLAASSKRNDMRLISVIMGSKSMQARADQSRELL 297


>gi|257465150|ref|ZP_05629521.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus
           minor 202]
 gi|257450810|gb|EEV24853.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus
           minor 202]
          Length = 392

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 147/258 (56%), Gaps = 10/258 (3%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-- 113
           I++D N    +     D+ +YPASLTKMMT Y++ + ++  K+  +  + V++ +  Q  
Sbjct: 41  ILMDYNSGAVLASLNPDQRQYPASLTKMMTAYVVGDAIKQGKVRNSDMVTVTENSWAQKF 100

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S ++L   T  +    +  LI  S ND + A  E  SGS++ F   M+  A++ G++
Sbjct: 101 PGSSLMFLDLNTQVSVGDLMKGLIIVSGNDAAVALAEHTSGSQQAFIDQMNKYAQQFGLK 160

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-NRIITNHNKLL 231
           NT +    GL D NQ ++A D AI+G  + ++ P+ YK ++ ++F+Y   +   N N LL
Sbjct: 161 NTYFTTVHGLDDPNQFSSAHDMAIIGAHVIRDQPEEYKIYAEKEFKYNIKKPQPNRNGLL 220

Query: 232 -NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI----TS 286
            +K  N+DG+KTG+T  +G+N+V S    +  +++VVMG+PT + R+ ++ +L+     +
Sbjct: 221 WDKTMNVDGMKTGHTDKAGYNLVASATNANTRLISVVMGVPTYKGREVESKKLLQWGFAN 280

Query: 287 FLEKKTLKHQQTHRKDNL 304
           F   K+L   Q  +++++
Sbjct: 281 FETVKSLPAGQAIKEESV 298


>gi|227114414|ref|ZP_03828070.1| D-alanyl-D-alanine carboxypeptidase fraction A [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
 gi|227327371|ref|ZP_03831395.1| D-alanyl-D-alanine carboxypeptidase fraction A [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 403

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 139/253 (54%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  + +     D  R PASLTKMMT Y+I + ++S K+ 
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEMNADTRRDPASLTKMMTSYVIGQAIKSGKIS 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            N  + V K A AT NP     S ++LK        Q    +I +S ND   A  ++++G
Sbjct: 94  PNDIVTVGKDAWATGNPTFQGSSLMFLKPGDRVPVSQLNRGIILQSGNDACVAMADYVAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+   K +G++NT ++   GL    Q ++ARD A++G  L ++ P+ Y  + 
Sbjct: 154 SQDAFVNLMNGYVKALGLKNTNFETVHGLDAPGQFSSARDMALIGQALIRDVPEEYATYK 213

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F + N    N N LL +   N+DGIKTG+T ++GFN+V S       +++ V+G   
Sbjct: 214 EKEFTFNNIRQPNRNGLLWDSSLNVDGIKTGHTSSAGFNLVASATEGQMRLISAVLGGRN 273

Query: 273 SQERDQKALELIT 285
           ++ R+ ++ +L+T
Sbjct: 274 AKGRESESKKLLT 286


>gi|308048532|ref|YP_003912098.1| penicillin-binding protein 6 [Ferrimonas balearica DSM 9799]
 gi|307630722|gb|ADN75024.1| penicillin-binding protein 6 [Ferrimonas balearica DSM 9799]
          Length = 387

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 127/221 (57%), Gaps = 14/221 (6%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYL---KEKTYF 126
           E R PASLTKMMT Y++ + L    +     + +S  A  +N    S +++   KE    
Sbjct: 56  EQRAPASLTKMMTSYVLGQELNRGNVRETDMVKISNNAWAKNFPGSSVMWIEVGKEVNLM 115

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
              +G   ++ +S ND   A  E ++G+E  +  LM+  + ++GM +T + NA GL   +
Sbjct: 116 DLYRG---MVVQSGNDACVAIAEHVAGTESAYTDLMNAWSGQLGMADTHFANAHGLDATD 172

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK---LLNKMHNIDGIKTG 243
           Q+TTA D AILG  + ++ PQYY  +S+++F +    I  HN+   L ++  N+DG+KTG
Sbjct: 173 QVTTAYDMAILGRAIIRDIPQYYPLYSLKEFTFNG--IRQHNRNGLLWDRSLNVDGMKTG 230

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +T  +G+N+V+S    D  ++AVVMG  + Q R+ ++ +L+
Sbjct: 231 HTNGAGYNLVSSATKGDMRLIAVVMGAKSPQSREAESKKLL 271


>gi|212712937|ref|ZP_03321065.1| hypothetical protein PROVALCAL_04035 [Providencia alcalifaciens DSM
           30120]
 gi|212684415|gb|EEB43943.1| hypothetical protein PROVALCAL_04035 [Providencia alcalifaciens DSM
           30120]
          Length = 409

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/237 (35%), Positives = 136/237 (57%), Gaps = 8/237 (3%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           I+ID N  + +     D+ R PASLTKMMT Y+I + ++S K+  N  + V   A AT N
Sbjct: 56  ILIDYNSGKVLAESNADQRRDPASLTKMMTSYVIGQAIKSGKIGANDMVTVGDDAWATGN 115

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S ++LK     +  Q    +  +S ND   A  ++++G +  F  LM+    K+
Sbjct: 116 PIFKGSSLMFLKPGDRVSVSQLTRGINLQSGNDACVAMADYVAGDQANFVNLMNTYVTKL 175

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+QNT ++   GL    Q ++ARD A++G  L ++ P+ Y+ +  ++F + N   TN N 
Sbjct: 176 GLQNTHFQTVHGLDAAGQYSSARDMALIGQALIRDVPEEYEIYKEKEFTFNNIRQTNRNG 235

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL +K   +DGIKTG+T  +G+N+V S +  D  +++VVMG  +S+ RD ++ +L+T
Sbjct: 236 LLWDKSLAVDGIKTGHTDAAGYNLVASAKDGDMRLISVVMGGKSSKGRDAESKKLLT 292


>gi|149190858|ref|ZP_01869122.1| D-alanyl-D-alanine carboxypeptidase [Vibrio shilonii AK1]
 gi|148835318|gb|EDL52291.1| D-alanyl-D-alanine carboxypeptidase [Vibrio shilonii AK1]
          Length = 394

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 130/223 (58%), Gaps = 4/223 (1%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT---QNPSKLYLKE 122
           + G  QD    PASLTK+MT Y++ + +++ +   ++++ VS+ A +    + SK+++K 
Sbjct: 47  LVGGNQDAALAPASLTKLMTAYVVGKEIENGRTSWDSKVAVSENAWSVKFPDSSKMFIKP 106

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
               T    +  LI +S ND + A  E ++G+E  F  LM+  A  +GM NT + NA GL
Sbjct: 107 GDNVTVADLLRGLIVQSGNDAAVALAEHVAGTESGFVALMNQWAVNLGMNNTQFINAHGL 166

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIK 241
             +   TT  D AIL   + ++ P+ Y+ +S ++F + +    N N+LL +   N+DG K
Sbjct: 167 DGQGIHTTPNDMAILMRKIIEDVPEVYEIYSEKRFVWADIKQYNRNRLLWDNSLNVDGGK 226

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           TGYT ++G+++V+S       +++VVMG P++Q R + + +L+
Sbjct: 227 TGYTSDAGYSLVSSATQGQMRLISVVMGTPSTQTRVEASRQLL 269


>gi|317047293|ref|YP_004114941.1| beta-lactamase [Pantoea sp. At-9b]
 gi|316948910|gb|ADU68385.1| Beta-lactamase [Pantoea sp. At-9b]
          Length = 428

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/272 (31%), Positives = 149/272 (54%), Gaps = 17/272 (6%)

Query: 31  MGKILFLSIIMISMASELHAK------PKYSS---IVIDVNKNQMTGFKQ-DEPRYPASL 80
           +G ++ LS+   ++A +++ K      P   +   ++ID N  ++   K  D  R PASL
Sbjct: 40  VGSLVALSLSHAAIADDVNLKTMIPGVPDIDAEAYVLIDYNSGKVLAEKNADARRDPASL 99

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILA 134
           TKMMT Y+I + +++ K+H +  + V K A AT NP     S ++LK        Q    
Sbjct: 100 TKMMTSYVIGQAVKAGKIHQDDIVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVSQLTRG 159

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           ++ +S ND   A  ++++GS+  F  LM+N  + +G++NT ++   GL    Q ++ARD 
Sbjct: 160 IVLQSGNDACVAMADYVAGSQDAFVNLMNNYVQALGLKNTHFQTVHGLDADGQYSSARDM 219

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIV 253
           A++G  L ++ P  Y  +  ++F + N    N N LL +   N+DGIKTG+T  +G+N+V
Sbjct: 220 ALIGQALIRDVPDEYAVYHEKEFTFNNIRQLNRNGLLWDTSLNVDGIKTGHTDAAGYNLV 279

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            S       +++ VMG  T + R+ ++ +L+T
Sbjct: 280 ASATEGQMRLISAVMGGHTYKGRETESKKLLT 311


>gi|312144315|ref|YP_003995761.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halanaerobium sp.
           'sapolanicus']
 gi|311904966|gb|ADQ15407.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halanaerobium sp.
           'sapolanicus']
          Length = 375

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 139/236 (58%), Gaps = 8/236 (3%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY--PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S+I+++    Q+  F ++  R   PAS+TK+M L I  E L+   + L+ ++ +S+ AA+
Sbjct: 32  SAILMEAETGQVL-FSKNADRKLPPASMTKIMPLLIAMEKLEEGAISLDDKVTISRYAAS 90

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S+++L   T    E+ + A+   S ND S A GE+I+G+   F  +M+ +A+++GM+
Sbjct: 91  MGGSQIFLAANTQVELEKLLKAVTIASGNDASVAIGEYIAGTYSNFIAMMNRRAEELGME 150

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNRIITNHN 228
           NT + N++GL D +  +TARD AI+   L K +P   ++ SI     +   R  ++ N N
Sbjct: 151 NTNFSNSTGLPDPDNYSTARDIAIMSRELAK-YPLVLQWGSIWTENIQLPGREAMLVNTN 209

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +L+N   ++DG+KTG+TR +GF +  + +  D  +++VVM   T ++R+   + L+
Sbjct: 210 RLINVYPSMDGLKTGHTREAGFCLSATAQKGDTRLISVVMQGDTLEQREDTTIRLL 265


>gi|261493869|ref|ZP_05990381.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261495135|ref|ZP_05991599.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261309205|gb|EEY10444.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261310471|gb|EEY11662.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 392

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/245 (33%), Positives = 143/245 (58%), Gaps = 7/245 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-- 113
           I++D N  + +     D+ +YPASLTKMMT Y++ E L+S K+  +  + V++ +  Q  
Sbjct: 41  ILMDYNSGEVLVSLNPDQRQYPASLTKMMTSYVVGEALKSGKVQNSDMVTVTENSWAQKF 100

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S ++L   +  +  + +  LI  S ND S A  E +SGS+  F   M+  A++ G++
Sbjct: 101 PGSSLMFLDLNSKVSVGELMKGLIIVSGNDASVALAEHVSGSQAAFINEMNKYAQQFGLK 160

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-NRIITNHNKLL 231
           NT +    GL D  Q ++ARD AI+G  + ++ P+ YK ++ ++F+Y   +   N N LL
Sbjct: 161 NTHFTTVHGLDDPEQYSSARDMAIIGSHIIRDQPEEYKIYAEKEFQYNIKKPQPNRNGLL 220

Query: 232 -NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI-TSFLE 289
            +K   +DG+KTG+T  +G+N+V S    +  +++VVMG+PT + R+ ++ +L+   F  
Sbjct: 221 WDKTIQVDGMKTGHTDKAGYNLVASAINPNTRLISVVMGVPTYKGREVESKKLLQWGFAN 280

Query: 290 KKTLK 294
            +T+K
Sbjct: 281 FETIK 285


>gi|325844944|ref|ZP_08168309.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sp. HGF1]
 gi|325488994|gb|EGC91383.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sp. HGF1]
          Length = 389

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 122/213 (57%), Gaps = 5/213 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TKMM++Y+I E + +  L  +  I VS+ AA+   S++YLK            ++ 
Sbjct: 59  PASMTKMMSMYLILESIHNGALQWDEVIRVSENAASYGGSQIYLKPGEKMIVRDLFKSIA 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             SAND  TA  E ++GSE+ F  LM+ KAK++GM NT++KN +GL     +TT  D +I
Sbjct: 119 IASANDSVTALAERVAGSEEAFVELMNQKAKELGMNNTVFKNPTGLTAAGHVTTPYDMSI 178

Query: 197 LGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +   L +++P+  ++       IR+       + N N+L+  +  +DG+KTG+T+ +G+ 
Sbjct: 179 IARHLLQDYPEITEFSGLYEDYIRQDTESPFWLVNTNRLIKYVDGVDGLKTGFTQEAGYC 238

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +  + +     ++AVVMG   S+ R+Q+   LI
Sbjct: 239 LTATAQRNGMRVIAVVMGASKSEIRNQEVTRLI 271


>gi|254511090|ref|ZP_05123157.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacteraceae bacterium
           KLH11]
 gi|221534801|gb|EEE37789.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacteraceae bacterium
           KLH11]
          Length = 389

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 128/235 (54%), Gaps = 9/235 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D+P  PAS++K+MTLY+ FE L+  +L L+  +PVS+ A +   S ++L  +     E  
Sbjct: 49  DQPLPPASMSKLMTLYVAFEALRDGRLTLDETLPVSEHAMSYGGSTMFLNTQDRVRVEDL 108

Query: 132 ILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           +  +I  S ND      E +S  GSE  FA  M+ +A+++GM ++ + N++G      + 
Sbjct: 109 LRGIIVLSGNDACVVIAEALSPDGSEAGFARFMTQRAQQMGMNDSNFANSNGWPAAGHMM 168

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT---NHNKLLNKMHNIDGIKTGYTR 246
           +  D A+L   L  +FP+YY  F+  +F +  R  +   N N LL      DG+KTG+T+
Sbjct: 169 SVHDLAVLADRLITDFPEYYPLFAEEEFEFDGRAPSNSRNRNPLLKLGIGADGLKTGHTQ 228

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT----SFLEKKTLKHQQ 297
            +G+ +V S +  D  +V V+ G+ +  +R ++A  ++     +F+E+   K  +
Sbjct: 229 EAGYGLVGSAKQGDRRVVFVLSGLDSVGKRAEEAEAVVNWSFRNFVERTVAKADE 283


>gi|284009241|emb|CBA76342.1| penicillin-binding protein [Arsenophonus nasoniae]
          Length = 418

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 130/221 (58%), Gaps = 7/221 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           D+ R PASLTKMMT YII + +++ K+ +N  + + + A AT NP     S ++LK    
Sbjct: 81  DQRRDPASLTKMMTSYIIGQTIKAGKISMNDIVTIDENAWATGNPVFKGSSLMFLKPGDR 140

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +  Q I  +  +S ND   A  E+++G E  F  LM++  +++G++NT +    GL   
Sbjct: 141 VSVSQLIRGINLQSGNDACVAMAEYVAGDEASFVKLMNDNVQRLGLKNTHFLTVHGLDAD 200

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGY 244
            Q ++ARD A++G  L ++ P+ Y  +  ++F +      N N LL +K  N+DGIKTG+
Sbjct: 201 GQYSSARDMALIGQALIRDVPEEYAIYKEKEFTFNKIRQLNRNGLLWDKSLNVDGIKTGH 260

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           T  +G+N+V S    +  +++V++G  +S+ RD ++ +L+T
Sbjct: 261 TSAAGYNLVASATEGNMRLISVILGGHSSKGRDAESKKLLT 301


>gi|85713001|ref|ZP_01044039.1| D-alanyl-D-alanine carboxypeptidase [Idiomarina baltica OS145]
 gi|85693170|gb|EAQ31130.1| D-alanyl-D-alanine carboxypeptidase [Idiomarina baltica OS145]
          Length = 388

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 121/209 (57%), Gaps = 4/209 (1%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTT 128
           DE   PASLTKMMT YII + +Q+ ++  +  + +S+ A  +N    SK++++  T  + 
Sbjct: 57  DESLPPASLTKMMTSYIIGKEIQAGRISNSDMVTISENAWAKNFPESSKMFIEVGTEVSV 116

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
                 +I  S ND   A  E+I+GSE  FA LM+  A+++GM ++ + N+ GL D  Q 
Sbjct: 117 SDLNHGIIISSGNDACVAMAEYIAGSEGAFADLMNTYAQEVGMTSSHFANSHGLPDPEQY 176

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRN 247
            +ARD + L   L    P+ YK +S + + Y N    N N LL ++  N+DGIKTG+T  
Sbjct: 177 VSARDMSKLASALINETPEEYKIYSQKSYTYNNIKQYNRNALLWDRSMNVDGIKTGHTSE 236

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           +G+++VTS    D  +++VV+G  + Q R
Sbjct: 237 AGYSLVTSAVDGDTRLISVVIGTGSEQAR 265


>gi|83311550|ref|YP_421814.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum
           AMB-1]
 gi|82946391|dbj|BAE51255.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum
           AMB-1]
          Length = 388

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 139/243 (57%), Gaps = 6/243 (2%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +I+ID    Q+   K  DE   P+S++K+MT++++F+ L++     + ++PVS+TA  ++
Sbjct: 37  AIIIDYASGQVLMEKNADELMVPSSMSKLMTVFMVFDKLKTGAWKPSDRLPVSETAWKRH 96

Query: 115 ----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S ++L   +  T E+ +  ++ +S ND  +   E  SGSE+ FA   + +A++IG
Sbjct: 97  YKSEGSLMFLPVNSTATVEELLKGVVIQSGNDACSVLAEAHSGSEEAFAEEETRRARQIG 156

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           +  +++KNASG  +   + TARD ++L   L  +FP+YY  FS  +F +      N N L
Sbjct: 157 LTRSVFKNASGWPEPGHLMTARDLSVLARHLIADFPEYYPLFSQMEFVFNGIKQGNRNPL 216

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT-SFLE 289
           L      DG+KTG+T  +G+ +  S++  +  I+ ++ GM + +ER +++  L   +F E
Sbjct: 217 LYNTPGADGLKTGHTEAAGYGLTASIKRGNRRIIMILNGMSSMKERAEESRRLTEWAFRE 276

Query: 290 KKT 292
            +T
Sbjct: 277 WET 279


>gi|92113673|ref|YP_573601.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chromohalobacter
           salexigens DSM 3043]
 gi|91796763|gb|ABE58902.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Chromohalobacter salexigens DSM 3043]
          Length = 359

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 143/257 (55%), Gaps = 7/257 (2%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           M+  A EL A    + +++D +  + +     D+   PASLTKMMT YI+   + +  + 
Sbjct: 1   MVPSAPELAAS---AWVLMDADSGKILVEHNADKELPPASLTKMMTAYIVEREIDAGNIS 57

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            + +  +S+ A     S+++L   +  + +  +  ++ +S ND S A  E I+GSE  FA
Sbjct: 58  GDDEATISENAWRTGGSRMFLNPGSKVSIDNLLRGVVIQSGNDASVALAEHIAGSEDAFA 117

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            LM+ +A ++ +++T + N +GL  +   ++A D A++   + K++P +Y+ +S + F +
Sbjct: 118 DLMNQQAARMKLEHTHFMNPTGLPHEEHYSSAHDLAVIAQHIIKDYPDHYEVYSEKYFTW 177

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            +    N N+LL +  N+DG+KTG+T  +G+ +V S +     +VAVVMG  + + R Q+
Sbjct: 178 NDIRQPNRNRLLWRDPNVDGLKTGHTEAAGYCLVASAKKDGTRLVAVVMGTDSDEARAQE 237

Query: 280 ALELIT---SFLEKKTL 293
             +L++    F E + L
Sbjct: 238 TQKLLSYGFRFFETQRL 254


>gi|325577705|ref|ZP_08147980.1| D-alanyl-D-alanine carboxypeptidase DacA [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160450|gb|EGC72576.1| D-alanyl-D-alanine carboxypeptidase DacA [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 395

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/245 (33%), Positives = 137/245 (55%), Gaps = 7/245 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           +++D N    +     D+ +YPASLTKMMT Y++   L+  K+H    + +S++A  +N 
Sbjct: 44  VLMDYNSGAVLASLNPDQRQYPASLTKMMTSYVVGAALKQGKIHNEDMVTISESAWGRNF 103

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L      +       +I  S ND   A  E ISG+   F   M+   ++ G++
Sbjct: 104 PDSSKMFLNLNQQVSVGDLNKGIIIVSGNDACVAVAEHISGTVANFVDTMNKYVQQFGLK 163

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           NT +    GL D NQ +TARD AI+G  + ++ P+ YK ++ + F +      N N LL 
Sbjct: 164 NTNFTTPHGLDDPNQYSTARDMAIIGAHIIRDLPEEYKIYAEKDFTFNKIKQPNRNGLLW 223

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELI-TSFLE 289
           +K  N+DG+KTG+T  +G+N+V S    ++  +++VVMG+PT + R+ ++ +L+   F  
Sbjct: 224 DKTINVDGMKTGHTSQAGYNLVASATSPNNMRLISVVMGVPTYKGREVESKKLLQWGFAN 283

Query: 290 KKTLK 294
            +TLK
Sbjct: 284 FETLK 288


>gi|145633414|ref|ZP_01789144.1| hypothetical protein CGSHi3655_04260 [Haemophilus influenzae 3655]
 gi|145635213|ref|ZP_01790917.1| penicillin-binding protein 5 precursor [Haemophilus influenzae
           PittAA]
 gi|144985977|gb|EDJ92579.1| hypothetical protein CGSHi3655_04260 [Haemophilus influenzae 3655]
 gi|145267492|gb|EDK07492.1| penicillin-binding protein 5 precursor [Haemophilus influenzae
           PittAA]
          Length = 393

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 134/234 (57%), Gaps = 6/234 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           +++D N    +T    D+ +YPASLTK+MT Y++   L+  K+H    + + ++A  +N 
Sbjct: 42  VLMDYNSGAILTALNPDQRQYPASLTKIMTSYVVGVALKQGKIHNTDMVTIGESAWGRNF 101

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L   T  +       +I  S ND + A  E ISG+   F   M+   ++ G++
Sbjct: 102 PDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGLK 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           NT +    GL D NQ ++ARD AI+G  + ++ P+ YK +S + F +      N N LL 
Sbjct: 162 NTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQPNRNGLLW 221

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELI 284
           +K  N+DG+KTG+T  +G+N+V S    ++  +++VVMG+PT + R+ ++ +L+
Sbjct: 222 DKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLL 275


>gi|313901874|ref|ZP_07835294.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467867|gb|EFR63361.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 437

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/236 (35%), Positives = 127/236 (53%), Gaps = 9/236 (3%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V+D    Q+   K  DEPR+PAS++K+MTL +  E + + ++ L  Q+ VS  A     
Sbjct: 88  LVMDPASGQILWEKNGDEPRHPASISKLMTLLLTLEAIDAGQIRLQDQVTVSPRAQGTPG 147

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S  +L+     T E  I A+   SAND   A  E+ISG   +F   M+ +A ++G+  T 
Sbjct: 148 STAFLEAGERITVEDLIKAVAVASANDACVALAEYISGDVDRFVQRMNQRAAELGLTRTR 207

Query: 176 YKNASGLHDK--NQITTARDQAILGILLRKNFPQYYKYFSI-----RKFRYRNRIITNHN 228
           + +  GL D+  N++ +ARD A+L   L  + P+   Y SI     RK   R   +TN N
Sbjct: 208 FVDPHGLTDQPGNRM-SARDVALLSRYLINHHPEILHYTSIWEDWLRKGTDREFWLTNTN 266

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           KL+     +DG+KTG T  SG ++V + R  DD  + VV+G P S  R ++A  L+
Sbjct: 267 KLVAWYEGVDGLKTGLTDESGPSVVVTARKGDDRFIVVVLGAPDSNTRWREASRLL 322


>gi|297539773|ref|YP_003675542.1| beta-lactamase [Methylotenera sp. 301]
 gi|297259120|gb|ADI30965.1| Beta-lactamase [Methylotenera sp. 301]
          Length = 390

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 132/227 (58%), Gaps = 2/227 (0%)

Query: 60  DVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           D N N +   +    R  PASLTK+MT Y+ F+ L++  L L   +PVS+ A     SK+
Sbjct: 51  DFNSNYVIASQNSSMRIEPASLTKIMTAYLAFKALKNGHLSLTQTLPVSELAWKVEGSKM 110

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
           +++     T ++ +   I +S ND S A  E I+G+E +FA +M+ +A ++GM+NT Y N
Sbjct: 111 FIEPNKPVTVDELLHGTIIQSGNDSSIALAEGIAGTEPQFADMMNKEAARLGMKNTHYMN 170

Query: 179 ASGLHDKNQITTARDQAILGILLRKNFP-QYYKYFSIRKFRYRNRIITNHNKLLNKMHNI 237
           A+GL D    TTA D A L   L ++FP QY + +S++++ Y      N N+LL    N+
Sbjct: 171 ATGLPDAQHFTTADDLATLAAALIRDFPDQYQRLYSVKEYTYNKITQPNRNRLLWADPNV 230

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           DG+KTG+T  +G+ ++ S +      ++VV+G PT   R  ++ +L+
Sbjct: 231 DGMKTGHTETAGYCLIASAKRDGTRRISVVLGAPTDSARASESQKLL 277


>gi|251794126|ref|YP_003008857.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. JDR-2]
 gi|247541752|gb|ACS98770.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. JDR-2]
          Length = 428

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/259 (34%), Positives = 146/259 (56%), Gaps = 21/259 (8%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S+I+ID +  Q+      DEPR PAS+TKMMT YI+ E ++SK L+ +  I VS+ AA  
Sbjct: 50  SAILIDADTGQVVYEVNADEPRPPASMTKMMTEYIVLEQIKSKALNWDEMITVSEEAANT 109

Query: 113 -QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S++YL +   +  +   +A+   SAND + A    I GSE+ F   M+  A+K+G+
Sbjct: 110 PKDGSQVYLAQGEQYKVKDLYMAMAVGSANDATIALASAIGGSEQGFVEKMNETAQKLGL 169

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR---IITNHN 228
            +  Y +A+GL D   I +A+DQA L  ++ KN P++ +Y S  ++++R R    I N N
Sbjct: 170 TSAHYTSATGLADTTVI-SAKDQAKLAQIIIKNDPEFLEYASTTEYKFRPRDDKPIVNIN 228

Query: 229 KLL--NKMH---------NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
            +L  NK +          +DG+KTGY   +G+    +++  D   ++VVM   + + R 
Sbjct: 229 WMLASNKSNTYLKAFAYDGVDGMKTGYISAAGYTFTGTVKRGDQRYISVVMNTKSKEARF 288

Query: 278 QKALELIT-SF--LEKKTL 293
            +  +L   +F  LEKKT+
Sbjct: 289 NETAKLYNYAFNSLEKKTV 307


>gi|332529901|ref|ZP_08405852.1| serine-type D-Ala-D-Ala carboxypeptidase [Hylemonella gracilis ATCC
           19624]
 gi|332040598|gb|EGI76973.1| serine-type D-Ala-D-Ala carboxypeptidase [Hylemonella gracilis ATCC
           19624]
          Length = 378

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 142/271 (52%), Gaps = 22/271 (8%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           EL A+   + +++D++  Q +     D+   PASLTK+MT Y++FE L+  +L L   + 
Sbjct: 16  ELAAR---AWLLLDLSSGQALAASNADQTLPPASLTKLMTAYLVFEALRDGRLSLEKPLT 72

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           +S+ A  Q  S+++L+       E  I  L+ +S ND + A  E ++GS + F   M+ K
Sbjct: 73  ISERARRQPGSRMFLEAGMRVPVEDLIKGLLVQSGNDGAVALAEGVAGSMENFVQAMNEK 132

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII- 224
           A+ +G+  T + N +GL    Q +TARD  +L   L  +FP++  Y+ IRK+RY      
Sbjct: 133 ARALGLGATHFANPTGLPVDGQQSTARDLGVLAQRLLSDFPEHAHYYGIRKYRYAGTPPA 192

Query: 225 --TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS-------LRYKDDP----IVAVVMGMP 271
             +N N LL +  ++DG+KTG+    G+++V +       L     P    ++AVV+G  
Sbjct: 193 NDSNRNLLLFRDPSVDGMKTGHVEAVGYSMVATAQREFPHLGAAGGPGPRRLLAVVLGAD 252

Query: 272 TSQERDQKALELI----TSFLEKKTLKHQQT 298
           + Q R  +A  L+    T+F   K  +  Q 
Sbjct: 253 SEQTRAAEAQRLLNWGYTAFEAVKLFEANQA 283


>gi|304391674|ref|ZP_07373616.1| D-alanyl-D-alanine carboxypeptidase DacC [Ahrensia sp. R2A130]
 gi|303295903|gb|EFL90261.1| D-alanyl-D-alanine carboxypeptidase DacC [Ahrensia sp. R2A130]
          Length = 384

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 121/218 (55%), Gaps = 5/218 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK-----TAATQNPSKLYLKEKTYF 126
           DE   PAS+ K+MT+ ++F+ ++   L L+    +SK       AT   S ++       
Sbjct: 48  DELMPPASMAKLMTMEVVFDAVKRGALELDDTFTISKDVWQRGGATSGGSTMFADLNDDI 107

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
             E  I  +I +S ND + A  E ++GSE  FA LM+ +A++IG++ + + N++GL D N
Sbjct: 108 ALENLIRGVIVQSGNDAAMAIAEGMAGSETGFAGLMNQRARRIGLEKSNFTNSTGLPDPN 167

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           Q  TAR+  +L   L + +P+ Y+ ++  +F +      N N +L ++   DG+KTGYT 
Sbjct: 168 QRVTARELGLLARHLIRTYPELYQIYAEPEFTWNKVRQRNRNPILGRVDGADGLKTGYTE 227

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            SG+ +  S +  D  I+ V+ GM +  ER  +A++++
Sbjct: 228 ASGYGLTASAKVGDKRIIIVLNGMSSQAERRNEAIKMM 265


>gi|85858430|ref|YP_460632.1| D-alanyl-D-alanine serine-type carboxypeptidase [Syntrophus
           aciditrophicus SB]
 gi|85721521|gb|ABC76464.1| D-alanyl-D-alanine serine-type carboxypeptidase [Syntrophus
           aciditrophicus SB]
          Length = 310

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 133/234 (56%), Gaps = 3/234 (1%)

Query: 55  SSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           SSI++D+   ++  ++Q  D+P  PASLTK+++LY+ +E +   ++     + VS+ A  
Sbjct: 62  SSILMDMTDRRVL-YEQNADQPIQPASLTKVLSLYLTYEAMAQGRVRWLDSVVVSQAARQ 120

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
            + S++Y++       E  I  +   SAND S A  E ++G+  +F   M+ KA ++GM 
Sbjct: 121 ADGSRMYIEAGERVPLETLIKGMTVISANDASVAVAEHVAGNVDRFVERMNRKAGELGMT 180

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           +++++  +GL  + Q TTARD  IL     + FP      S++ + Y+     N N LL 
Sbjct: 181 HSVFRTPNGLPAEGQYTTARDMMILADAYLRRFPGSLALHSMQYYTYKKITQHNCNALLK 240

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           K  ++DG+K+G+ R SG+N++ + R  +  ++AVVMG  T + R ++   L+ +
Sbjct: 241 KYPDVDGLKSGFVRASGYNLIATARRGNTRLIAVVMGARTPEIRVRETRRLLDA 294


>gi|283850365|ref|ZP_06367654.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp.
           FW1012B]
 gi|283574391|gb|EFC22362.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp.
           FW1012B]
          Length = 365

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 126/235 (53%), Gaps = 4/235 (1%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPR--YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           P  +++V +    ++  F QD  +   PAS+TK+MT+Y++F+ L + +  L+ ++ VS+ 
Sbjct: 29  PVKAAMVAEYGSGRVL-FTQDPDKRIAPASVTKVMTMYLVFDALAAGRASLSDKVKVSRR 87

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A     S + L+     T ++ +  +   S ND + A  E   G    +  +M+ KA+++
Sbjct: 88  ADATGGSTMNLRAGEVVTLDELMRGMAVASGNDAAVAIAEHFGGVPH-WVGMMNEKAREL 146

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM +T +K  +GL    Q+TTARD   L     + +PQ  +Y S  +  +   +  N N+
Sbjct: 147 GMTSTTFKTPNGLPAPGQLTTARDLMKLATSYLRRYPQALRYHSTTEINHCGAVHGNTNR 206

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           LL     +DGIKTGY  +SG+NI+ + +  D  I+AVV+G  T Q R+     ++
Sbjct: 207 LLGVCEGVDGIKTGYVGSSGYNIIATAKRGDTRIIAVVLGGRTKQARNNATTRIL 261


>gi|166030455|ref|ZP_02233284.1| hypothetical protein DORFOR_00116 [Dorea formicigenerans ATCC
           27755]
 gi|166029813|gb|EDR48570.1| hypothetical protein DORFOR_00116 [Dorea formicigenerans ATCC
           27755]
          Length = 426

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 121/221 (54%), Gaps = 8/221 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D  R PAS+TK+MTL +IF+ LQ  K+HL  ++  S+ AA+   S+++L+     T E  
Sbjct: 93  DSKRPPASVTKVMTLLLIFDALQEGKIHLEDEVTTSEYAASMGGSQVFLEPGEVQTVETL 152

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           I  +   SAND      E+I G+E++F   M+ +AK +GM+NT + N +GL  +  +TTA
Sbjct: 153 IKCISVASANDACVCMAEYICGNEQEFVNQMNERAKGLGMENTHFVNCNGLDAEGHVTTA 212

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--------ITNHNKLLNKMHNIDGIKTG 243
           RD A++   L   +PQ + Y +I      +          +TN NK++ +     G+KTG
Sbjct: 213 RDIALMSRELIHTYPQIFDYCNIWMEDITHTTKKGSTQFGLTNTNKMIRQYEYATGLKTG 272

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            T  + F I  + R  +  ++AV+M    S+ R + A+ L+
Sbjct: 273 STSQAKFCISATARKDNTDMIAVIMAADDSKARMRDAITLL 313


>gi|283784604|ref|YP_003364469.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase)
           [Citrobacter rodentium ICC168]
 gi|282948058|emb|CBG87622.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase)
           [Citrobacter rodentium ICC168]
          Length = 400

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/276 (32%), Positives = 144/276 (52%), Gaps = 21/276 (7%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLT 81
           RNI     +LFL    +  A +  A P   +   I++D    + +     DE   PASLT
Sbjct: 9   RNIAAGSALLFLFAPAVMAAEQTIAAPAVEARAWILMDYASGKVLAEGNADEKLDPASLT 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILAL 135
           K+MT Y++ + L++ K+ L   + + K A AT NP     S ++LK             +
Sbjct: 69  KIMTSYVVGQALKADKIKLTDMVTIGKDAWATGNPALRGSSVMFLKPGDRVAVADLNKGV 128

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL    Q +TARD A
Sbjct: 129 IIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFRTVHGLDAPGQYSTARDMA 188

Query: 196 ILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSG 249
           +LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG+KTG T  +G
Sbjct: 189 LLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNINVDGMKTGTTAGAG 243

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 244 YNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279


>gi|223986124|ref|ZP_03636147.1| hypothetical protein HOLDEFILI_03455 [Holdemania filiformis DSM
           12042]
 gi|223961929|gb|EEF66418.1| hypothetical protein HOLDEFILI_03455 [Holdemania filiformis DSM
           12042]
          Length = 383

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 136/258 (52%), Gaps = 8/258 (3%)

Query: 35  LFLSIIMISMASELHAKPKY-SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEY 92
           LFL  +  + +  +   P   ++I+ID    Q+   K    + YPAS+TKMM+L ++ E 
Sbjct: 13  LFLVSVHATTSQGVDLTPSAKAAILIDYETGQILYEKNSSAKLYPASMTKMMSLLLVVEA 72

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           + + KL  +T++  S  A++   S+++L+     T E    A    SAND   A  E + 
Sbjct: 73  IHNGKLSWDTEVTASAHASSMGGSQIFLETGEVMTVEDLYKASTVASANDAIVALAEKVG 132

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG-ILLRKNFPQYYKY 211
           GSE+ FA +M+ KA+++G++ T + NA+GLHD N  + A+D A +G  L+++      ++
Sbjct: 133 GSEENFAAMMNEKAEQLGLEQTHFVNATGLHDDNHYSCAKDMAAIGRALIQEGQDDILRF 192

Query: 212 FS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
            S     IR        + N NKL+     +DG+KTGYT  S + I  + +     ++ V
Sbjct: 193 TSTYDDYIRADTENKFWLVNTNKLIRTYQGMDGLKTGYTTQSMYCITVTAKRDGLRLIGV 252

Query: 267 VMGMPTSQERDQKALELI 284
            MG PT   R+ +A  L+
Sbjct: 253 AMGEPTRDVRNSEASALL 270


>gi|303327144|ref|ZP_07357586.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp.
           3_1_syn3]
 gi|302863132|gb|EFL86064.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp.
           3_1_syn3]
          Length = 256

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 129/235 (54%), Gaps = 3/235 (1%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           P  S+I++++N  ++  ++Q  D    PASLTK+M++++  + +++ ++ LN ++ VS+ 
Sbjct: 2   PVRSAILVNLNTGRVL-YEQSADTAIPPASLTKLMSMFLTLDAVKAGRISLNRKVKVSRQ 60

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           AA    S ++L+        + +  +   S ND +    + + G+ + F   M+ KA+ +
Sbjct: 61  AAATGGSSMHLRAGERVPLVRLLTGMAVASGNDAAMTVAQHVHGNSRTFVRQMNRKARAL 120

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM+ T++KN +GL    Q TTARD   L     K  P   ++   R F +R R + N N 
Sbjct: 121 GMRRTLFKNPTGLPAAGQKTTARDMMTLSRAYLKAHPDAMRFHGTRFFLHRGRTMRNTNA 180

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           LL  +  ++G+KTG+T  SG+NIV + +     ++AVV+G  +   RD  A  LI
Sbjct: 181 LLGSVAGVNGLKTGWTVASGYNIVITAQRGKTRLLAVVLGGNSKDRRDISARRLI 235


>gi|332307130|ref|YP_004434981.1| Beta-lactamase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174459|gb|AEE23713.1| Beta-lactamase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 390

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/204 (37%), Positives = 118/204 (57%), Gaps = 4/204 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I + + +  +     + +S+ A  +N    SK++++  T  +      
Sbjct: 63  PASLTKMMTSYVIGKEIANGNIKDTDMVTISENAWAKNFPDSSKMFIEVGTQISVADLNR 122

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E I+GSE  FA +M+  A+K+GM +T + N+ GL D +  TT RD
Sbjct: 123 GIIVQSGNDACVAMAEHIAGSEDAFASMMNLHAEKLGMTSTNFVNSHGLQDADHYTTPRD 182

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A L   L  + P  YK +S ++F Y N    N N LL +K  N+DGIKTG+T ++G+++
Sbjct: 183 MATLARALITDVPNEYKVYSEKEFTYNNIKQYNRNGLLWDKSLNVDGIKTGHTSDAGYSL 242

Query: 253 VTSLRYKDDPIVAVVMGMPTSQER 276
           V+S    D  ++AVVMG  + + R
Sbjct: 243 VSSATQGDMRLIAVVMGADSERAR 266


>gi|254360903|ref|ZP_04977049.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia
           haemolytica PHL213]
 gi|153092382|gb|EDN73445.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia
           haemolytica PHL213]
          Length = 392

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/245 (33%), Positives = 143/245 (58%), Gaps = 7/245 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-- 113
           I++D N  + +     D+ +YPASLTKMMT Y++ E L+S K+  +  + V++ +  Q  
Sbjct: 41  ILMDYNSGEVLVSLNPDQRQYPASLTKMMTSYVVGEALKSGKVQNSDMVIVTENSWAQKF 100

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S ++L   +  +  + +  LI  S ND S A  E +SGS+  F   M+  A++ G++
Sbjct: 101 PGSSLMFLDLNSKVSVGELMKGLIIVSGNDASVALAEHVSGSQAAFINEMNKYAQQFGLK 160

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-NRIITNHNKLL 231
           NT +    GL D  Q ++ARD AI+G  + ++ P+ YK ++ ++F+Y   +   N N LL
Sbjct: 161 NTHFTTVHGLDDPEQYSSARDMAIIGSHIIRDQPEEYKIYAEKEFQYNIKKPQPNRNGLL 220

Query: 232 -NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI-TSFLE 289
            +K   +DG+KTG+T  +G+N+V S    +  +++VVMG+PT + R+ ++ +L+   F  
Sbjct: 221 WDKTIQVDGMKTGHTDKAGYNLVASAINPNTRLISVVMGVPTYKGREVESKKLLQWGFAN 280

Query: 290 KKTLK 294
            +T+K
Sbjct: 281 FETIK 285


>gi|157376621|ref|YP_001475221.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella sediminis
           HAW-EB3]
 gi|157318995|gb|ABV38093.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella sediminis
           HAW-EB3]
          Length = 395

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 85/261 (32%), Positives = 140/261 (53%), Gaps = 15/261 (5%)

Query: 57  IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           I++D N  Q+   +   E   PASLTKMMT Y+I   ++   +  + ++ +SK A ++N 
Sbjct: 46  ILMDYNTGQVIAEENAYESLNPASLTKMMTSYVIGHEIKVGNISPDDKVTISKKAWSKNF 105

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++++     T +     +I +S ND   A  E I+G+E  F  LM++ +K++GM+
Sbjct: 106 PDSSKMFIEVGKQVTVDDLNHGIIIQSGNDACVAMAEHIAGTEDGFVDLMNSWSKQLGME 165

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           ++ ++N+ GL  +N  TTA D A+LG  L ++ P+ Y  +  + F Y +    N N LL 
Sbjct: 166 DSYFENSHGLDSENHKTTAYDMALLGAALIRDVPEEYVLYKKKSFTYNSIKQYNRNGLLW 225

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA----------L 281
           +K  N+DGIKTG+T  +G+N+VTS       +VAVVMG  +   R  ++           
Sbjct: 226 DKSMNVDGIKTGHTSGAGYNLVTSATKDGMRLVAVVMGTKSESARKAESKKILNYGFRFF 285

Query: 282 ELITSFLEKKTLKHQQTHRKD 302
           E IT +   ++   QQ    D
Sbjct: 286 ETITPYKAGESFVTQQIWYGD 306


>gi|300716035|ref|YP_003740838.1| D-alanyl-D-alanine carboxypeptidase [Erwinia billingiae Eb661]
 gi|299061871|emb|CAX58987.1| D-alanyl-D-alanine carboxypeptidase [Erwinia billingiae Eb661]
          Length = 400

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 85/253 (33%), Positives = 140/253 (55%), Gaps = 13/253 (5%)

Query: 45  ASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHL 100
           A E  A P+  +   I++D N  ++      + R  PASLTKMM  Y++ + +++ K+  
Sbjct: 28  AEEAPAAPQIDAKAWILMDYNSGKVLAESHADDRLDPASLTKMMASYVVGQAIKAGKITN 87

Query: 101 NTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
           +  + V K A AT NP     S ++LK        +    +I +S ND S A  ++++GS
Sbjct: 88  DDMVTVGKDAWATGNPILQGSSLMFLKPGDRIPVSELNKGIIIQSGNDASIALADYVAGS 147

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           +  F  LM+N  + +G++NT +K   GL    Q +TARD A++G  L ++ PQ Y     
Sbjct: 148 QDSFVSLMNNYVQALGLKNTHFKTVHGLDSDGQYSTARDMALIGQALIRDVPQEYALHKE 207

Query: 215 RKFRYRNRI-ITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           ++F + NRI   N N+LL   +  +DGIKTG+T  +G N+V S    D  +++VV+G PT
Sbjct: 208 KEFTF-NRIHQQNRNRLLWSSNLQVDGIKTGHTAGAGNNLVASAVSGDQRLISVVLGSPT 266

Query: 273 SQERDQKALELIT 285
              R +++ +L+T
Sbjct: 267 DATRFRESEKLLT 279


>gi|50121610|ref|YP_050777.1| penicillin-binding protein 6 [Pectobacterium atrosepticum SCRI1043]
 gi|49612136|emb|CAG75586.1| penicillin-binding protein 6 [Pectobacterium atrosepticum SCRI1043]
          Length = 401

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 85/266 (31%), Positives = 144/266 (54%), Gaps = 11/266 (4%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTL 86
           +G +L +  +  + A +L A P+  +   I+ID +  + +     DE   PASLTK+M  
Sbjct: 15  VGTVLLVGAVPFTYAEQLPAVPQIDAKAFILIDHDSGKVLAESNADERLDPASLTKIMAS 74

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSA 140
           Y+I + L+S K+    ++ V K A AT NP     S ++LK        +    ++ +S 
Sbjct: 75  YVIGQALKSGKIRPTDEVTVGKDAWATGNPALRGSSLMFLKPGDRIPVSELNKGIVIQSG 134

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND S A  ++++GS+  F  LM+N AK + + NT +    GL    Q +TARD A+LG  
Sbjct: 135 NDASIALADYVAGSQDSFVSLMNNYAKALNLTNTHFLTVHGLDAPGQYSTARDMALLGQA 194

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYK 259
           L ++ P+ Y     ++F + N    N N+LL   + N+DG+KTG+T  +G N+V S    
Sbjct: 195 LIRDVPEEYALHKEKEFTFNNIRQPNRNRLLWSTNLNVDGVKTGHTNGAGHNLVASATEG 254

Query: 260 DDPIVAVVMGMPTSQERDQKALELIT 285
           +  +++VV+G  T   R +++ +L+T
Sbjct: 255 NMRLISVVLGAQTDSIRFRESEKLLT 280


>gi|157146509|ref|YP_001453828.1| D-alanyl-D-alanine carboxypeptidase fraction C [Citrobacter koseri
           ATCC BAA-895]
 gi|157083714|gb|ABV13392.1| hypothetical protein CKO_02270 [Citrobacter koseri ATCC BAA-895]
          Length = 413

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 146/276 (52%), Gaps = 21/276 (7%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLT 81
           R++     +LFL    +  A +  A P   +   I++D +  + +     DE   PASLT
Sbjct: 22  RSLAAGSALLFLFAPTLQAAEQTTAPPSVDARAWILMDYSSGKVLAEGNADEKLDPASLT 81

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILAL 135
           K+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK     +       +
Sbjct: 82  KIMTSYVVGQALKAGKIQLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVSDLNKGV 141

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL    Q +TARD A
Sbjct: 142 IIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMA 201

Query: 196 ILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSG 249
           +LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG+KTG T  +G
Sbjct: 202 LLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDGMKTGTTAGAG 256

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 257 YNLVASATQGDMRLISVVLGTKTDRIRFNESEKLLT 292


>gi|255320588|ref|ZP_05361766.1| D-alanyl-D-alanine carboxypeptidase DacC [Acinetobacter
           radioresistens SK82]
 gi|262378578|ref|ZP_06071735.1| penicillin-binding protein 6 [Acinetobacter radioresistens SH164]
 gi|255302350|gb|EET81589.1| D-alanyl-D-alanine carboxypeptidase DacC [Acinetobacter
           radioresistens SK82]
 gi|262299863|gb|EEY87775.1| penicillin-binding protein 6 [Acinetobacter radioresistens SH164]
          Length = 382

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 143/248 (57%), Gaps = 7/248 (2%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           ++S   EL+ K   S +++D    Q+   K ++E   PAS+TKMMT YII + L   +L 
Sbjct: 22  VLSSPPELNNK---SYVLMDYETGQILAAKNENEKLAPASMTKMMTSYIIEQKLLKGELT 78

Query: 100 LNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
            N Q+ ++++A    + + S +Y+      +  + +  +I +S ND S A  E ++G+E 
Sbjct: 79  ENEQVRMNESAWCRGSSSESCMYVPLNGTASVLEMLRGIIVQSGNDASKAVAEHVAGNEG 138

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            FA +M+ +AK+IGM NT + N++G+  +  ++TA+D AIL   + K+  +YY  +S ++
Sbjct: 139 TFAHMMNQEAKRIGMVNTHFVNSTGMPAEGHVSTAKDMAILAQHIIKDSSKYYPIYSEKE 198

Query: 217 FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           F +      N N LL    ++DG+KTG+T  +GF + TS +     +++V+ G PT QER
Sbjct: 199 FTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGFCLTTSSKRGPMRLISVIFGAPTMQER 258

Query: 277 DQKALELI 284
             +  +L+
Sbjct: 259 ATQTRDLL 266


>gi|304394240|ref|ZP_07376163.1| serine-type D-Ala-D-Ala carboxypeptidase [Ahrensia sp. R2A130]
 gi|303293680|gb|EFL88057.1| serine-type D-Ala-D-Ala carboxypeptidase [Ahrensia sp. R2A130]
          Length = 412

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/251 (33%), Positives = 129/251 (51%), Gaps = 13/251 (5%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +A   HA P  S   +D++  ++   +Q  +  +PASLTK+MT  + F  ++S +L  + 
Sbjct: 15  LALPAHALPHIS---VDLDSGRVLSAQQAFDLWHPASLTKLMTALVAFRAIESGRLTADH 71

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + VS  A    PSK+     T    E  +  L+ +SAND+S A  E +SGS   F+  M
Sbjct: 72  PVIVSDNARKAPPSKMGYSRGTTMRLEDALKLLLIKSANDISIALAESVSGSVPAFSQAM 131

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS----IRKFR 218
           + +A ++GM  + + N  GLHD+ Q+TTARD AIL  +L K +PQY    S    +   R
Sbjct: 132 NAEAARLGMTGSNFVNPHGLHDRRQVTTARDMAILLRVLHKQYPQYKAMLSTPSLLAPSR 191

Query: 219 YRN-----RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            +N     R+  ++N LL +    DG KTG+   SG+N   +       I A+V+G    
Sbjct: 192 TKNGKTIQRVYYSYNLLLERFRGADGFKTGFVCASGYNFAGAATRSGRRIAAIVLGRDGQ 251

Query: 274 QERDQKALELI 284
             R   A +LI
Sbjct: 252 TSRAVDAAKLI 262


>gi|167561357|ref|ZP_02354273.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           oklahomensis EO147]
          Length = 381

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 132/240 (55%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D   NQ +     DE   PASLTK+MT Y++FE L +KK+ +   +  S+     
Sbjct: 26  SWVLVDATSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRV 85

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+ +A+++GM
Sbjct: 86  GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGM 145

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
             T + + +G+ D    TTA D A L   L +++P YY  FS++ F Y N    N N+LL
Sbjct: 146 TGTHFADVNGMPDPQHYTTAGDLAKLSTHLIRDYPDYYSIFSVKDFTYNNIKQPNRNRLL 205

Query: 232 NKMHNIDGIKTGYTRNSGFNIVT----SLRYKDDP---IVAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++     SL    D    +V V+MG     +R Q +++++
Sbjct: 206 WLDPTVDGLKTGHTQAAGYCLIASAKRSLPGATDATRRLVTVMMGETKESDRVQDSMKML 265


>gi|163738564|ref|ZP_02145978.1| Serine-type D-Ala-D-Ala carboxypeptidase [Phaeobacter gallaeciensis
           BS107]
 gi|161387892|gb|EDQ12247.1| D-alanyl-D-alanine carboxypeptidase [Phaeobacter gallaeciensis
           BS107]
          Length = 396

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 119/213 (55%), Gaps = 5/213 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS++K+MTLY+ FE ++  +L L+ ++PVS+ A +   S ++L  +     E  +  +I
Sbjct: 61  PASMSKLMTLYVAFEAIRDGRLTLDERLPVSEHAMSYKGSTMFLNTQDRVRVEDLLRGII 120

Query: 137 TRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
             S ND      E +S  G+E  FA  M+ +A+++GM+N+ + N++G        +  D 
Sbjct: 121 VLSGNDACVVLAEALSPDGTEAGFARYMTKRAQEMGMENSTFANSNGWPAAGHRMSVEDL 180

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRI---ITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           AIL   L ++FPQYY  F+ R+F +  R    + N N LL      DG+KTG+T  +G+ 
Sbjct: 181 AILAEKLIEDFPQYYPLFAEREFEFDGRAPSNVRNRNPLLGLGIGADGLKTGHTSEAGYG 240

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +V S    D  ++ V+ G+ ++  R ++A  ++
Sbjct: 241 LVGSAAQGDRRVIFVITGLDSTTARAEEAEAIV 273


>gi|109897877|ref|YP_661132.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudoalteromonas
           atlantica T6c]
 gi|109700158|gb|ABG40078.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Pseudoalteromonas atlantica T6c]
          Length = 390

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 76/204 (37%), Positives = 118/204 (57%), Gaps = 4/204 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I + + +  +     + +S+ A  +N    SK++++  T  +      
Sbjct: 63  PASLTKMMTSYVIGKEIANGNIKDTDMVTISENAWAKNFPDSSKMFIEVGTQISVGDLNR 122

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E I+GSE  FA +M+  A+K+GM +T + N+ GL D +  TT RD
Sbjct: 123 GIIVQSGNDACVAMAEHIAGSEDAFASMMNLHAEKLGMTSTHFVNSHGLQDADHYTTPRD 182

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A L   L  + P  YK +S ++F Y N    N N LL +K  N+DGIKTG+T ++G+++
Sbjct: 183 MATLARALITDVPNEYKVYSEKEFTYNNIKQYNRNGLLWDKSLNVDGIKTGHTSDAGYSL 242

Query: 253 VTSLRYKDDPIVAVVMGMPTSQER 276
           V+S    D  ++AVVMG  + + R
Sbjct: 243 VSSATQGDMRLIAVVMGADSERAR 266


>gi|163743049|ref|ZP_02150432.1| D-alanyl-D-alanine carboxypeptidase [Phaeobacter gallaeciensis
           2.10]
 gi|161383732|gb|EDQ08118.1| D-alanyl-D-alanine carboxypeptidase [Phaeobacter gallaeciensis
           2.10]
          Length = 396

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 119/213 (55%), Gaps = 5/213 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS++K+MTLY+ FE ++  +L L+ ++PVS+ A +   S ++L  +     E  +  +I
Sbjct: 61  PASMSKLMTLYVAFEAIRDGRLTLDERLPVSEHAMSYKGSTMFLNTQDRVRVEDLLRGII 120

Query: 137 TRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
             S ND      E +S  G+E  FA  M+ +A+++GM+N+ + N++G        +  D 
Sbjct: 121 VLSGNDACVVLAEALSPDGTEAGFARYMTKRAQEMGMENSTFANSNGWPAAGHRMSVEDL 180

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRI---ITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           AIL   L ++FPQYY  F+ R+F +  R    + N N LL      DG+KTG+T  +G+ 
Sbjct: 181 AILAEKLIEDFPQYYPLFAEREFEFDGRAPSNVRNRNPLLGLGIGADGLKTGHTSEAGYG 240

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +V S    D  ++ V+ G+ ++  R ++A  ++
Sbjct: 241 LVGSAAQGDRRVIFVITGLDSTTARAEEAEAIV 273


>gi|237730821|ref|ZP_04561302.1| D-alanyl-D-alanine carboxypeptidase fraction C [Citrobacter sp.
           30_2]
 gi|226906360|gb|EEH92278.1| D-alanyl-D-alanine carboxypeptidase fraction C [Citrobacter sp.
           30_2]
          Length = 407

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 127/226 (56%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K++LN  + V K A AT NP     S ++LK    
Sbjct: 66  DEKLDPASLTKIMTSYVVGQALKAGKINLNDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 125

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
                    +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 126 VAVSDLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAA 185

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 186 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSTNLNVDG 240

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 241 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 286


>gi|291085651|ref|ZP_06353607.2| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC
           29220]
 gi|291070535|gb|EFE08644.1| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC
           29220]
          Length = 413

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 127/226 (56%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K++LN  + V K A AT NP     S ++LK    
Sbjct: 72  DEKLDPASLTKIMTSYVVGQALKAGKINLNDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 131

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
                    +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 132 VAVSDLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAA 191

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 192 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSTNLNVDG 246

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 247 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 292


>gi|93005488|ref|YP_579925.1| Serine-type D-Ala-D-Ala carboxypeptidase [Psychrobacter
           cryohalolentis K5]
 gi|92393166|gb|ABE74441.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Psychrobacter cryohalolentis K5]
          Length = 388

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 144/264 (54%), Gaps = 8/264 (3%)

Query: 29  QLMGKILFLSIIMIS-MASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           QL+  ++ +SI M + MAS     P+ ++   +++D N  ++   K  ++   PASLTKM
Sbjct: 9   QLVQLVVGVSISMGAVMASAAIQPPEMANTAYVLMDYNTGEILAQKNANQALPPASLTKM 68

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK---LYLKEKTYFTTEQGILALITRSA 140
           MT YII + L S  L    Q+ +S +A  +  S    +Y+      +    +  +I +S 
Sbjct: 69  MTSYIIEQRLASGDLKETDQVLMSPSAWCRGSSSQSCMYVPVNKSASVIDMLRGIIIQSG 128

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND S A  E I+GSE  FAILM+ +A+KIGM+NT + N++G+ D+    +A D A L   
Sbjct: 129 NDASKAMAEHIAGSEASFAILMNEQAQKIGMKNTHFVNSTGMPDEGHQASALDLAKLSRA 188

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           + KN   YY  +S ++F Y      N N LL     +DG+KTG+T  +G+ +  S   + 
Sbjct: 189 IIKNSGDYYSIYSEKEFTYNGITQGNRNALLATDPTVDGLKTGHTDAAGYCLAASSNREG 248

Query: 261 DPIVAVVMGMPTSQERDQKALELI 284
             +++V+MG  + Q R  ++ EL+
Sbjct: 249 MRLISVIMGTESQQARADQSRELL 272


>gi|229075784|ref|ZP_04208761.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock4-18]
 gi|229098546|ref|ZP_04229487.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock3-29]
 gi|229117572|ref|ZP_04246944.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock1-3]
 gi|228665892|gb|EEL21362.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock1-3]
 gi|228684868|gb|EEL38805.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock3-29]
 gi|228707336|gb|EEL59532.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock4-18]
          Length = 385

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 80/242 (33%), Positives = 138/242 (57%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL LN ++  S+
Sbjct: 30  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLNDKVRASE 89

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 90  HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMKYPLIRKYTGKYEDY--LREDTDKKF 207

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +
Sbjct: 208 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTK 267

Query: 283 LI 284
           L+
Sbjct: 268 LL 269


>gi|167568588|ref|ZP_02361462.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           oklahomensis C6786]
          Length = 378

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 132/240 (55%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S +++D   NQ +     DE   PASLTK+MT Y++FE L +KK+ +   +  S+     
Sbjct: 23  SWVLVDATSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITMEQIVTPSEAVRRV 82

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+ +A+++GM
Sbjct: 83  GRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGM 142

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
             T + + +G+ D    TTA D A L   L +++P YY  FS++ F Y N    N N+LL
Sbjct: 143 TGTHFADVNGMPDPQHYTTAGDLAKLSTHLIRDYPDYYSIFSVKDFTYNNIKQPNRNRLL 202

Query: 232 NKMHNIDGIKTGYTRNSGFNIVT----SLRYKDDP---IVAVVMGMPTSQERDQKALELI 284
                +DG+KTG+T+ +G+ ++     SL    D    +V V+MG     +R Q +++++
Sbjct: 203 WLDPTVDGLKTGHTQAAGYCLIASAKRSLPGATDATRRLVTVMMGETKESDRVQDSMKML 262


>gi|121597580|ref|YP_989692.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei SAVP1]
 gi|167002262|ref|ZP_02268052.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei PRL-20]
 gi|121225378|gb|ABM48909.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei SAVP1]
 gi|243062001|gb|EES44187.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei PRL-20]
          Length = 511

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 141/267 (52%), Gaps = 22/267 (8%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK---TA 110
           S +V+D +  +  G    D  R PASLTK+MT Y+ F+ L+   L  +  + V+     +
Sbjct: 58  SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERAALRWDDTVTVAADDIAS 117

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             ++ +++YL           +  LI  SAND +    + I GS   FA +M++ A+++G
Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ + + SG+   N  +TA D +IL   L ++FP +Y + S R F Y     TN N+L
Sbjct: 178 MRDSHFVSPSGITTPNHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTS---------LRYKDDPIVAVVMGMPTSQER--DQK 279
           L    ++DG+KTG+T  +G+ +V +          R++   ++AV++G PT ++R  D +
Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHR---VIAVLLGEPTEKQRLADAR 294

Query: 280 ALELITSFLEKKTLKHQQTHRKDNLSS 306
           AL L   F    +L     HR+ +L+ 
Sbjct: 295 AL-LDQGFA---SLGADAPHRRSSLAC 317


>gi|229013286|ref|ZP_04170427.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus mycoides DSM 2048]
 gi|229134885|ref|ZP_04263692.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus BDRD-ST196]
 gi|228648560|gb|EEL04588.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus BDRD-ST196]
 gi|228748053|gb|EEL97917.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus mycoides DSM 2048]
          Length = 385

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 80/242 (33%), Positives = 138/242 (57%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL LN ++  S+
Sbjct: 30  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLNDKVRASE 89

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 90  HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMKYPLIRKYTGKYEDY--LRENTDKKF 207

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +
Sbjct: 208 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTK 267

Query: 283 LI 284
           L+
Sbjct: 268 LL 269


>gi|163941818|ref|YP_001646702.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
 gi|163864015|gb|ABY45074.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
          Length = 396

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 80/242 (33%), Positives = 138/242 (57%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL LN ++  S+
Sbjct: 41  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLNDKVRASE 100

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 101 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 160

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 161 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMKYPLIRKYTGKYEDY--LRENTDKKF 218

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +
Sbjct: 219 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTK 278

Query: 283 LI 284
           L+
Sbjct: 279 LL 280


>gi|229104683|ref|ZP_04235345.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock3-28]
 gi|228678747|gb|EEL32962.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock3-28]
          Length = 385

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 80/242 (33%), Positives = 138/242 (57%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL LN ++  S+
Sbjct: 30  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLNDKVRASE 89

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 90  HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMKYPLIRKYTGKYEDY--LREDTDKKF 207

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +
Sbjct: 208 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTK 267

Query: 283 LI 284
           L+
Sbjct: 268 LL 269


>gi|315180861|gb|ADT87775.1| D-alanyl-D-alanine carboxypeptidase [Vibrio furnissii NCTC 11218]
          Length = 391

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 86/253 (33%), Positives = 137/253 (54%), Gaps = 8/253 (3%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSK 96
           S ++I  A ++ AK     ++ID +  ++   K+   +  PASLTKMMT Y+I + L+  
Sbjct: 27  SPVVIPDAPQIAAK---GFVLIDYHSGKVLAEKEMHTKLSPASLTKMMTSYVIGQELKRG 83

Query: 97  KLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            +  +  + +S+ A  +N    SK++++  T          +I +S ND   A  E I+G
Sbjct: 84  NITNDDDVTISRNAWAKNFPDSSKMFIEVGTTVKVRDLNQGIIVQSGNDACVAMAEHIAG 143

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           SE  F  LM+  A  +GMQ T + N  GL D N  +T  D A+LG  L ++ P  YK +S
Sbjct: 144 SEDAFVDLMNAWADTLGMQETHFANVHGLDDPNLYSTPYDMALLGQALIRDVPDEYKIYS 203

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            +KF Y      N N LL +K  N+DGIKTG+T N+G+++V+S       ++AVVMG   
Sbjct: 204 QQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLIAVVMGTKD 263

Query: 273 SQERDQKALELIT 285
              R  ++ +L++
Sbjct: 264 MNARKSESKKLLS 276


>gi|157962970|ref|YP_001503004.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella pealeana ATCC
           700345]
 gi|157847970|gb|ABV88469.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella pealeana ATCC
           700345]
          Length = 390

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 132/233 (56%), Gaps = 5/233 (2%)

Query: 57  IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           +++D N  Q+   +   E   PASLTKMMT Y+I   ++   +  + ++ +SK A ++N 
Sbjct: 41  VLMDYNTGQIIAEENAYESLNPASLTKMMTSYVIGHEIKVGNVSPSDEVTISKKAWSKNF 100

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++++     T E     +I +S ND   A  E I+G+E  F  LM++ AK++GMQ
Sbjct: 101 PDSSKMFIEVGKKVTVEDLNKGIIIQSGNDACVAMAEHIAGTEDGFVDLMNSWAKQLGMQ 160

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           ++ ++N+ GL   N  +TA D AILG  + ++ P+ Y  +  + F Y      N N LL 
Sbjct: 161 DSYFENSHGLDSDNHKSTAYDMAILGAAIIRDVPEEYAVYKEKSFTYNGIKQYNRNGLLW 220

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +K  ++DGIKTG+T  +GFN+VTS       +++VVMG  +   R  ++ +L+
Sbjct: 221 DKSLSVDGIKTGHTSGAGFNLVTSATKDGMRLISVVMGTKSEAARKAESKKLL 273


>gi|114327736|ref|YP_744893.1| D-alanyl-D-alanine serine-type carboxypeptidase [Granulibacter
           bethesdensis CGDNIH1]
 gi|114315910|gb|ABI61970.1| D-alanyl-D-alanine serine-type carboxypeptidase [Granulibacter
           bethesdensis CGDNIH1]
          Length = 419

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 80/242 (33%), Positives = 129/242 (53%), Gaps = 5/242 (2%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++V+D N       K+ D    P+S+TK+MT YI++  L++ KL ++  +PVS+ A    
Sbjct: 76  AVVVDFNTGATLLDKEADVQMPPSSMTKLMTAYIVYGELKAGKLQMDQMLPVSEKAWRLQ 135

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            SK+++        E  I  +I  S ND      E I+GSE++F  LM+ KAK +G+ N+
Sbjct: 136 GSKMFVPYPGSVKVEDLIRGMIVDSGNDACIVLAEGIAGSEQQFVDLMNQKAKLLGLTNS 195

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            ++N +G+   N   + RD A L   + ++FP+YY + S + F+Y N    N N L+ K 
Sbjct: 196 NFENCTGMPSANHHMSVRDIATLARRIIQDFPEYYHFDSEKTFKYNNIEQQNRNPLVQK- 254

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKK 291
              DG+KTG+T   G+ +  S       ++ VV G+ TS +R    ++ LE   S  E  
Sbjct: 255 GIADGLKTGHTDAGGYGVCASAERNKRRVILVVNGLTTSHQRASESERLLEWAFSQFENV 314

Query: 292 TL 293
           TL
Sbjct: 315 TL 316


>gi|163746820|ref|ZP_02154177.1| D-alanyl-D-alanine carboxypeptidase [Oceanibulbus indolifex HEL-45]
 gi|161379934|gb|EDQ04346.1| D-alanyl-D-alanine carboxypeptidase [Oceanibulbus indolifex HEL-45]
          Length = 396

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 9/222 (4%)

Query: 72  DEPRYPASLTKMMTLYIIFEYL----QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           DEP  PAS++K+MTLY+ FE +    Q+  L L  ++PVS+ A +   S ++L      +
Sbjct: 45  DEPLPPASMSKLMTLYMAFEAVERGKQNGGLDLVEELPVSEHAMSYGGSTMFLDTTDRVS 104

Query: 128 TEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            E  I  +I  S ND S    E +S  G+E  FA LM+ +A+++GM N+ + N++G    
Sbjct: 105 VEDLIRGVIVLSGNDASAVIAEALSPDGTEYGFARLMTQRAQQMGMTNSTFANSNGWPQA 164

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT---NHNKLLNKMHNIDGIKT 242
             + + RD  +L   +  ++PQ+Y  F+ R+F +  R      N N LL      DG+KT
Sbjct: 165 GHLMSVRDLGLLANRIISDYPQFYPLFAEREFAFDGRAPQNKLNRNPLLGLGIGADGLKT 224

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           G+T  +G+ +V S +  D  ++ V+ G+ ++  R Q+A  ++
Sbjct: 225 GHTNEAGYGLVGSAKQGDRRVIFVLSGLDSAAARAQEAESVV 266


>gi|260912849|ref|ZP_05919335.1| D-alanyl-D-alanine carboxypeptidase DacA [Pasteurella dagmatis ATCC
           43325]
 gi|260633227|gb|EEX51392.1| D-alanyl-D-alanine carboxypeptidase DacA [Pasteurella dagmatis ATCC
           43325]
          Length = 395

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/246 (32%), Positives = 142/246 (57%), Gaps = 9/246 (3%)

Query: 45  ASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A +L+A+   + I++D N    +     D+ +YPASLTKMMT Y++ + L+  K++ N  
Sbjct: 35  APQLNAQ---TYILMDYNSGAVLASLNPDQRQYPASLTKMMTSYVVGDALKQGKINNNDM 91

Query: 104 IPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
           + + ++A  +N    SK++L      +       +I  S ND S A  E +SGS   F  
Sbjct: 92  VTIGESAWGKNFPGSSKMFLNLNQQVSVSDLNRGVIIVSGNDASVAIAEHVSGSVPAFVE 151

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
            M+   ++ G++NT + +  GL D NQ +++RD AI+G  L ++ P+ YK ++ + F + 
Sbjct: 152 AMNKYVQQFGLKNTHFTSVHGLDDDNQYSSSRDMAIIGAHLIRDLPEEYKIYAEKDFTFN 211

Query: 221 NRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQ 278
                N N LL +K   +DGIKTG+T  +G+N+V+S    ++  +++VVMG+PT + R+ 
Sbjct: 212 KIKQNNRNGLLWDKTIQVDGIKTGHTDKAGYNLVSSATNSNNMRLISVVMGVPTIKGREV 271

Query: 279 KALELI 284
           ++ +L+
Sbjct: 272 ESKKLL 277


>gi|56460065|ref|YP_155346.1| D-alanyl-D-alanine carboxypeptidase [Idiomarina loihiensis L2TR]
 gi|56179075|gb|AAV81797.1| D-alanyl-D-alanine carboxypeptidase [Idiomarina loihiensis L2TR]
          Length = 385

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/204 (37%), Positives = 117/204 (57%), Gaps = 4/204 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT YII + + + ++     + VS+ A  +N    SK++++     + ++   
Sbjct: 59  PASLTKMMTSYIIGKEMLAGRISEKDIVTVSENAWAKNFPESSKMFIEVGKEVSVKELNR 118

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I  S ND   A  E I+GSE  FA LM+N A++IGM+++ + N+ GL D  Q  +ARD
Sbjct: 119 GIIISSGNDACVAMAEHIAGSEDAFAGLMNNYAEQIGMKDSHFANSHGLPDSEQYVSARD 178

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A L   L    P  YK +S + F Y N    N N LL ++  N+DGIKTG+T  +G+++
Sbjct: 179 MATLASALINETPDEYKLYSEKSFTYNNIKQYNRNSLLWDRSLNVDGIKTGHTNEAGYSL 238

Query: 253 VTSLRYKDDPIVAVVMGMPTSQER 276
           V+S       ++AVVMG  + Q R
Sbjct: 239 VSSAVEDGTRLIAVVMGTNSEQAR 262


>gi|99078561|ref|YP_611819.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruegeria sp. TM1040]
 gi|99035699|gb|ABF62557.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruegeria sp. TM1040]
          Length = 393

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 146/278 (52%), Gaps = 12/278 (4%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           I ++  +   S      A E  A+  Y   V+D   N +   K  D P  PAS++K+MTL
Sbjct: 11  IGVLAGLWIASSTTAVQAFETKARAAY---VVDQGTNTVLLSKNADVPMPPASMSKLMTL 67

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y+ FE ++  +L ++ ++PVS+ A +   S ++L        E  +  +I  S ND    
Sbjct: 68  YVAFEAVRDGRLTMDERLPVSEHAMSYKGSTMFLDTTDRVRVEDLLRGIIVLSGNDACAV 127

Query: 147 FGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
             E +S  G+E  FA  M+ +A+++GM ++ + N++G  D     + RD AIL   L ++
Sbjct: 128 IAEALSPDGTEAGFARYMTRRARELGMNDSTFMNSNGWPDDGHRMSVRDLAILAEHLIED 187

Query: 205 FPQYYKYFSIRKFRYRNRIIT---NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           FP++Y  F+ + F +  R  +   N N LL      DG+KTG+T+ +G+ +V S +  D 
Sbjct: 188 FPEFYPMFAEQVFEFDGRAPSNTRNRNPLLQLDIGADGLKTGHTQEAGYGLVGSAKQGDR 247

Query: 262 PIVAVVMGMPTSQERDQKALELIT-SF--LEKKTLKHQ 296
            ++ V+ G+ ++ ER +++  ++  SF    KKT+  +
Sbjct: 248 RVIFVISGLNSTPERAEESEAIVNWSFRQFTKKTIARE 285


>gi|152976485|ref|YP_001376002.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025237|gb|ABS23007.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH
           391-98]
          Length = 392

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/271 (32%), Positives = 149/271 (54%), Gaps = 18/271 (6%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           L+  +L LS   +S A    A    KPK      S+IVI+ +  ++   K  +E   PAS
Sbjct: 8   LVCCMLLLSHTSVSFAKSEKAIEETKPKLAEQASSAIVIEQDTGKVLFEKNPNEKLPPAS 67

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MT+ +I E ++  KL L  ++  S+ AA+   S+++L+     T  + +  +   S
Sbjct: 68  MTKIMTMLLIMEQVEKGKLKLEDKVRTSEHAASMGGSQIFLEPGEEMTVNEMLKGIAIAS 127

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG- 198
            ND S A  E I+GSE+ F  +M+ +AK++G++NT ++N +GL  KN  +TA D AI+  
Sbjct: 128 GNDASVAVAEHIAGSEEGFVNMMNKRAKELGLKNTHFQNPTGLPAKNHYSTAIDMAIIAK 187

Query: 199 -----ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
                 L+RK   +Y  Y  +R+   +   + N NKL+     +DG+KTG+T  + + + 
Sbjct: 188 ELMKYPLIRKYTGKYEDY--LRENTDKKFWLVNTNKLVRFYPGVDGVKTGFTTEAKYCLT 245

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            S       +++VVMG PTS+ER+ +  +L+
Sbjct: 246 ASAEKNGMRVISVVMGAPTSKERNSQVTKLL 276


>gi|262376081|ref|ZP_06069312.1| penicillin-binding protein 6 [Acinetobacter lwoffii SH145]
 gi|262309175|gb|EEY90307.1| penicillin-binding protein 6 [Acinetobacter lwoffii SH145]
          Length = 382

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/247 (32%), Positives = 140/247 (56%), Gaps = 7/247 (2%)

Query: 45  ASELHAKPKY---SSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           A+ L A P+    S +++D    Q+   K ++E   PAS+TKMMT YII + L S +L  
Sbjct: 20  ATVLSAPPELNNKSYVLMDYETGQLLASKNENEKLAPASMTKMMTSYIIEQKLLSGELTE 79

Query: 101 NTQIPVSKTAATQNPSK---LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           + Q+ ++++A  +  S    +Y+      T  + +  +I +S ND S A  E I+G+E  
Sbjct: 80  DEQVRMNESAWCRGSSAESCMYVPLNGTATALEMLRGIIIQSGNDASKAMAEHIAGNEGT 139

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           FA +M+ +AK+IGM NT + N++G+  +   +TA+D A L   + K+  +YY  ++ ++F
Sbjct: 140 FAHMMNQEAKRIGMTNTSFVNSTGMPAEGHYSTAKDMATLAQHIIKDSSKYYPIYAEKEF 199

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
            +      N N LL    ++DG+KTG+T  +G+ + TS +     +++V+ G PT QER 
Sbjct: 200 TFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPTRLISVIFGAPTMQERA 259

Query: 278 QKALELI 284
            +  EL+
Sbjct: 260 TQTRELL 266


>gi|227329429|ref|ZP_03833453.1| penicillin-binding protein 6 [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 401

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 145/266 (54%), Gaps = 11/266 (4%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTL 86
           +G +L + ++  + A +L A P+  +   I+ID +  + +     DE   PASLTK+M  
Sbjct: 15  VGTVLLVGLVPFTYAEQLPAVPQIDAKAYILIDHHSGKVLAESNADERLDPASLTKIMAS 74

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSA 140
           Y+I + ++S K+    ++ V K A AT NP     S ++LK        +    ++ +S 
Sbjct: 75  YVIGQAIKSGKIRPTDEVTVGKDAWATGNPALRGSSLMFLKPGDRIPVSELNKGIVIQSG 134

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND S A  ++++GS+  F  LM+N AK + + NT +    GL    Q +TARD A+LG  
Sbjct: 135 NDASIALADYVAGSQDAFVSLMNNYAKALNLTNTNFLTVHGLDAPGQYSTARDMALLGQA 194

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYK 259
           L ++ P+ Y     ++F + N    N N+LL   + N+DG+KTG+T  +G N+V S    
Sbjct: 195 LIRDVPEEYALHKEKEFTFNNIRQPNRNRLLWSTNLNVDGVKTGHTNGAGHNLVASATEG 254

Query: 260 DDPIVAVVMGMPTSQERDQKALELIT 285
           +  +++VV+G  T   R +++ +L+T
Sbjct: 255 NMRLISVVLGAQTDAIRFRESEKLLT 280


>gi|293400812|ref|ZP_06644957.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305838|gb|EFE47082.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 378

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 117/208 (56%), Gaps = 6/208 (2%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPAS+TKMM L +IFE L   KL    ++  S  AA+   S+++L+E    + +  I ++
Sbjct: 51  YPASMTKMMGLLLIFESLHDGKLDWKDEVTTSAYAASMGGSQVFLEENETMSVKDMIKSI 110

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
              SAND   A  E + GS + F  +M+ KAKK+ + NT + N +GLHD    T A+D A
Sbjct: 111 CIASANDAMVAMAEKVGGSAEHFVEMMNEKAKKLNLCNTHFMNPTGLHDPQHYTCAKDMA 170

Query: 196 ILG-ILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
           I+G  L+++      K  S     IR+   +   + N NKLL +   +DG+K+G+T  + 
Sbjct: 171 IVGKALIKEGGDDLLKITSTYDAYIREDSEKAFWLVNTNKLLKQYPGVDGLKSGFTSQAM 230

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERD 277
             I  + + KD  ++AVVMG P+S+ R+
Sbjct: 231 SCITITAKKKDLRLIAVVMGEPSSKVRN 258


>gi|53716694|ref|YP_105744.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei ATCC 23344]
 gi|67641067|ref|ZP_00439854.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei GB8 horse 4]
 gi|124381420|ref|YP_001024168.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei NCTC 10229]
 gi|126447167|ref|YP_001078428.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei NCTC 10247]
 gi|254200552|ref|ZP_04906917.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei FMH]
 gi|254204580|ref|ZP_04910933.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei JHU]
 gi|52422664|gb|AAU46234.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei ATCC 23344]
 gi|124289440|gb|ABM98709.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia mallei NCTC
           10229]
 gi|126240021|gb|ABO03133.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia mallei NCTC
           10247]
 gi|147748164|gb|EDK55239.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei FMH]
 gi|147754166|gb|EDK61230.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei JHU]
 gi|238521922|gb|EEP85370.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei GB8 horse 4]
          Length = 333

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 131/242 (54%), Gaps = 18/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK---TA 110
           S +V+D +  +  G    D  R PASLTK+MT Y+ F+ L+   L  +  + V+     +
Sbjct: 58  SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERAALRWDDTVTVAADDIAS 117

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             ++ +++YL           +  LI  SAND +    + I GS   FA +M++ A+++G
Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ + + SG+   N  +TA D +IL   L ++FP +Y + S R F Y     TN N+L
Sbjct: 178 MRDSHFVSPSGITTPNHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSL---------RYKDDPIVAVVMGMPTSQER--DQK 279
           L    ++DG+KTG+T  +G+ +V +          R++   ++AV++G PT ++R  D +
Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHR---VIAVLLGEPTEKQRLADAR 294

Query: 280 AL 281
           AL
Sbjct: 295 AL 296


>gi|237809572|ref|YP_002894012.1| Beta-lactamase [Tolumonas auensis DSM 9187]
 gi|237501833|gb|ACQ94426.1| Beta-lactamase [Tolumonas auensis DSM 9187]
          Length = 413

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 140/249 (56%), Gaps = 13/249 (5%)

Query: 48  LHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           L + P+ S+   +++D N  Q + G   +E   PASLTKMMT Y+I + L+S ++     
Sbjct: 51  LPSPPQISAKAHLLMDYNSGQILVGENTEERLPPASLTKMMTSYVIGQELKSGRIKPTDM 110

Query: 104 IPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
           + +S+ A  +N    SK++++     + +     +I +S ND   A  E I+GSE  FA 
Sbjct: 111 VTISQNAWAKNYGDSSKMFIEVGKQVSVDNLNKGIIIQSGNDACIAMAEHIAGSEDSFAS 170

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
           LM+  A K+GM N+ + NA GLH+ +  +TA D A +G  L ++ P  Y  +S + F + 
Sbjct: 171 LMNQWAAKLGMSNSHFVNAHGLHNVDHYSTAHDMARMGQALIRDLPNEYAIYSQKDFTFN 230

Query: 221 NRIITNHNK---LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQER 276
              IT HN+   L +K   +DGIKTG+    G+N+V S    +   +++V++G  + Q+R
Sbjct: 231 G--ITQHNRNRLLWDKTLVVDGIKTGHVSEVGYNLVASATGPEGMRLISVIIGSNSEQQR 288

Query: 277 DQKALELIT 285
            +++ +L+T
Sbjct: 289 AEESKKLLT 297


>gi|313114949|ref|ZP_07800445.1| putative D-alanyl-D-alanine carboxypeptidase [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622742|gb|EFQ06201.1| putative D-alanyl-D-alanine carboxypeptidase [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 368

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 124/236 (52%), Gaps = 3/236 (1%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  ++ +ID     +   K  + + P AS+TK+MTL + FE +   ++ ++T +PVS+ A
Sbjct: 16  PCRAACLIDQQTGTILYEKNADQQMPIASITKVMTLLLTFEAVHDGRIAMDTLVPVSEHA 75

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S+++L+    FT ++ I A+   SAND + A  E + GSE  F  +M+ +A ++G
Sbjct: 76  YHMGGSQIWLEPGEQFTLDEMIKAICVSSANDAAVAVAELVGGSEPGFVQMMNARAAELG 135

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--ITNHN 228
           M NT + NA GL  +  ++TA D AI+   +    P+   Y  I     R     + N N
Sbjct: 136 MVNTTFHNACGLDTEGHLSTAHDVAIMSREILNTCPEVLHYTGIWTDTLRGGATQLVNTN 195

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           KLL + + I G+KTG T  +G  I  S       ++AVV+G  +S ER   A  L+
Sbjct: 196 KLLKRYNGITGLKTGTTSGAGVCISASATRDGLDLIAVVLGSLSSSERFTAATTLL 251


>gi|317496786|ref|ZP_07955116.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895798|gb|EFV17950.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 399

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 140/261 (53%), Gaps = 17/261 (6%)

Query: 55  SSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+IV++    ++   K +D+   PAS+TK+M+L +IFE L+  K+ L   + VS+ AA+ 
Sbjct: 43  SAIVMEQESKEILFAKDKDKELAPASVTKIMSLLLIFEDLKQGKIKLTDTVTVSEHAASM 102

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+       +  I  ++  SAND   A  E + GSE+ F   M+ KA+++GM++
Sbjct: 103 GGSQVFLETGEKQQVQTLIKCVVISSANDAVVALAEHVCGSEEAFVSRMNKKARELGMKH 162

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII--------- 224
           T ++NA GL  K  +T+A D A++   L + +P+ +KY  I    + + II         
Sbjct: 163 TTFQNACGLDTKGHVTSAYDIALMTRELAQRYPEVFKYTKI----WMDTIIHKTKKGEKE 218

Query: 225 ---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
              +N NKL+ + H   G+KTG T  +GF +  +       ++AVVMG  +S+ R + A 
Sbjct: 219 FGLSNTNKLIRQYHGCTGMKTGSTGKAGFCLSATATRNKIHMIAVVMGCESSKARIKDAR 278

Query: 282 ELITSFLEKKTLKHQQTHRKD 302
            L+          H +T RK+
Sbjct: 279 TLLDYGFSNCQRIHSETTRKE 299


>gi|71065253|ref|YP_263980.1| penicillin-binding protein 6 [Psychrobacter arcticus 273-4]
 gi|71038238|gb|AAZ18546.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Psychrobacter arcticus 273-4]
          Length = 388

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/264 (32%), Positives = 146/264 (55%), Gaps = 8/264 (3%)

Query: 29  QLMGKILFLSIIMIS-MASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           QL+  ++ +SI M + MAS    +P+ ++   +++D N  ++   K  ++   PASLTKM
Sbjct: 9   QLVQLVVGVSISMSAVMASAAIQQPEMANTAYVLMDYNTGEILAQKNANQALPPASLTKM 68

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           MT YII + L S  L    Q+ +S  A    + + S +Y+      +    +  +I +S 
Sbjct: 69  MTSYIIEQRLASGDLKETDQVLMSPNAWCRGSNSQSCMYVPVNKSASVIDMLRGIIIQSG 128

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND S A  E I+GSE  FAILM+ +A+KIGM+NT + N++G+ ++    +A D A L   
Sbjct: 129 NDASKAMAEHIAGSEASFAILMNEQAQKIGMKNTHFVNSTGMPEEGHQASALDLAKLSRA 188

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           + KN   YY+ +S ++F Y      N N LL     +DG+KTG+T  +G+ +  S   + 
Sbjct: 189 IIKNSGDYYRIYSEKEFTYNGITQGNRNALLATDPTVDGLKTGHTDAAGYCLAASSNREG 248

Query: 261 DPIVAVVMGMPTSQERDQKALELI 284
             +++V+MG  + Q R  ++ EL+
Sbjct: 249 MRLISVIMGTESQQARADQSRELL 272


>gi|134299097|ref|YP_001112593.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
           MI-1]
 gi|134051797|gb|ABO49768.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
           MI-1]
          Length = 437

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 130/228 (57%), Gaps = 6/228 (2%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
            +I+++ +  Q+    Q+ +P +PAS+TK+M LYI+ E + +  LH    +  SK     
Sbjct: 68  GAILVNQDTGQVIYADQEHQPFHPASITKLMVLYILLENIHNGVLHWEDPVQASKKVERI 127

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           N +++YL+E    + E+ I A++  SAND + A  E ++GSE  F  +M+ KA ++G++N
Sbjct: 128 NEAQIYLREGEVLSLEEMIKAMVVASANDAAVALAERVAGSEAAFVEIMNAKALELGLRN 187

Query: 174 TIYKNASGL---HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR--IITNHN 228
           + + NASGL   +  N   +A D A+L   L + +P+  ++  +     RN    I N N
Sbjct: 188 SHFINASGLPASNSYNHYMSAYDIALLAKYLLEEYPEVLEFSRLTTTTIRNGSFPIANTN 247

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
            LL     +DG+KTGYT  +G+ +V + +     +++VV+G P+++ R
Sbjct: 248 SLLGIFQGMDGLKTGYTDRAGWCLVATAQRNGQRMISVVLGSPSNEIR 295


>gi|285017609|ref|YP_003375320.1| D-alanyl-D-alanine carboxypeptidase [Xanthomonas albilineans GPE
           PC73]
 gi|283472827|emb|CBA15332.1| probable d-alanyl-d-alanine carboxypeptidase protein [Xanthomonas
           albilineans]
          Length = 402

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 131/236 (55%), Gaps = 6/236 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S +++D    Q+   + +  R  PAS+TK+MT Y++   L+  K+  + Q+ +S+ A  +
Sbjct: 52  SWVLMDYASGQVLAGENEHLRVAPASITKVMTSYVVAAELKQGKIKRDDQVMLSERAWRE 111

Query: 114 NPSKLYLKEKTYFTTEQGIL-----ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
             +        +   +   L      +  +S ND + A  E  +GSE+ FA LM+N A K
Sbjct: 112 GGAGTDGSYSGFPVNQTARLEDMEKGMAVQSGNDAAIALAEHTAGSEEAFANLMNNYAAK 171

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           IGM  + + NA GL  +   TTA D A+LG  + +++P+ Y Y  IR+FR  +    N N
Sbjct: 172 IGMTGSHFVNAHGLSAEGHYTTAYDLALLGRAMVRDYPETYAYNKIREFRVGDITQPNRN 231

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            LL +  ++DGIKTG+T  +G+ +++S +  D  ++AVVMG  + ++R + +L L+
Sbjct: 232 LLLWRDPSVDGIKTGHTSEAGYCLLSSAQRGDQRLIAVVMGDSSEKQRAEDSLALL 287


>gi|195941235|ref|ZP_03086617.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           O157:H7 str. EC4024]
          Length = 363

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 124/221 (56%), Gaps = 7/221 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L+  + V K A AT NP     S ++LK    
Sbjct: 24  DEKLDPASLTKIMTSYVVGQALKAGKIKLDDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 83

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS+  F  LM+  A+K+G+ NT +K   GL   
Sbjct: 84  VSVSDLNKGVIIQSGNDACIALADYVAGSQDSFIGLMNGYAQKLGLTNTTFKTVHGLDAP 143

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGY 244
            Q +TARD A+LG  L  + P  Y     ++F + N    N N+LL   + N+DG+KTG 
Sbjct: 144 GQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSSNVNVDGMKTGT 203

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 204 TAGAGYNLVASATQGDMRLISVVLGTKTDRIRFNESEKLLT 244


>gi|300715824|ref|YP_003740627.1| penicillin-binding protein 5 [Erwinia billingiae Eb661]
 gi|299061660|emb|CAX58776.1| Penicillin-binding protein 5 [Erwinia billingiae Eb661]
          Length = 403

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 145/271 (53%), Gaps = 17/271 (6%)

Query: 32  GKILFLSIIMISMASELHAK------PKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLT 81
           G ++ LS+   + A +++ K      P   +   ++ID N  ++   K  D  R PASLT
Sbjct: 16  GSLIALSLTSFAHADDVNIKTMIPGVPDIDAEAYVLIDYNSGKVLAEKNADARRDPASLT 75

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILAL 135
           KMMT Y+I + +++ K+  +  + V K A AT NP     S ++LK        +    +
Sbjct: 76  KMMTSYVIGQAVKAGKIKQDDMVTVGKDAWATGNPVFKGSSLMFLKPGDRVAVSELTRGI 135

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + +S ND   A  ++++GS+  F  LM+N  K +G+QNT ++   GL    Q ++ARD A
Sbjct: 136 VLQSGNDACVAMADYVAGSQDTFVGLMNNYVKALGLQNTHFQTVHGLDADGQYSSARDMA 195

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVT 254
           ++G  L ++ P  Y  +  ++F + N    N N LL +    +DGIKTG+T  +G+N+V 
Sbjct: 196 LIGRALIRDVPDEYAVYKEKEFTFNNIRQMNRNGLLWDTSLQVDGIKTGHTEAAGYNLVA 255

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           S       +++ VMG  T + R+ ++ +L+T
Sbjct: 256 SATEGQMRLISAVMGGHTYKGRETESKKLLT 286


>gi|167766358|ref|ZP_02438411.1| hypothetical protein CLOSS21_00862 [Clostridium sp. SS2/1]
 gi|167711949|gb|EDS22528.1| hypothetical protein CLOSS21_00862 [Clostridium sp. SS2/1]
          Length = 399

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 131/244 (53%), Gaps = 16/244 (6%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
           +D+   PAS+TK+M+L +IFE L+  K+ L   + VS+ AA+   S+++L+       + 
Sbjct: 60  KDKELAPASVTKIMSLLLIFEDLKQGKIKLTDTVTVSEHAASMGGSQVFLETGEKQQVQT 119

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            I  ++  SAND   A  E + GSE+ F   M+ KA+++GM++T ++NA GL  K  +T+
Sbjct: 120 LIKCVVISSANDAVVALAEHVCGSEEAFVSRMNKKARELGMKHTTFQNACGLDAKGHVTS 179

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII------------TNHNKLLNKMHNID 238
           A D A++   L + +P+ +KY  I    + + II            +N NKL+ + H   
Sbjct: 180 AYDIALMTRELAQRYPEVFKYTKI----WMDTIIHKTKKGEKEFGLSNTNKLIRQYHGCT 235

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
           G+KTG T  +GF +  +       ++AVVMG  +S+ R + A  L+          H +T
Sbjct: 236 GMKTGSTGKAGFCLSATATRNKIHMIAVVMGCESSKARIKDARTLLDYGFSNCQRIHSET 295

Query: 299 HRKD 302
            RK+
Sbjct: 296 TRKE 299


>gi|220904314|ref|YP_002479626.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868613|gb|ACL48948.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 258

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 128/236 (54%), Gaps = 1/236 (0%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  S+I+I+++  ++   K  D    PASLTK+MT+Y+  + +++ K+    +I ++   
Sbjct: 2   PVRSAILINMDTGKILYAKNADMAIPPASLTKVMTMYLAMDQIRAGKIKPGEKIRITPQV 61

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A    S ++L+        Q +  +   S ND +TA    + G++++F   M+ KAK +G
Sbjct: 62  AAVGGSSMHLRAGERVALSQLLTGMAVVSGNDAATAVARRVGGNDRQFVRAMNQKAKALG 121

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M  T +KN +GL    Q TTARD A +     ++ P   +Y S++   YR+R   N N L
Sbjct: 122 MNRTTFKNPTGLPAAGQKTTARDMARMTRAYLRSHPSALRYHSVQLLTYRDRKTRNTNGL 181

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L  +  ++G+KTG+T  SG+N++ + +     ++AVVMG  +   RD  A  LI +
Sbjct: 182 LGTVAGVNGLKTGWTVASGYNLIVTGQRGKTRMLAVVMGGTSRVGRDNAARRLIEA 237


>gi|319783486|ref|YP_004142962.1| serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317169374|gb|ADV12912.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 434

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 123/220 (55%), Gaps = 5/220 (2%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKT 124
           + D+P  PAS+ K+MT+ ++F  ++S +L L+    VS+ A     A    S ++ K K+
Sbjct: 98  EADKPIPPASMAKLMTMEVVFNAIKSGRLKLDDTFVVSENAWRKGGAPSGTSTMFAKLKS 157

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
               E  I  +  ++AND      E +SGSE  FA+ M+ +A++IG++ + + N++GL  
Sbjct: 158 SIRLEDLIQGVTVQAANDGCIVIAEGMSGSEDNFAVQMTERARQIGLKTSTFVNSTGLPA 217

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGY 244
             Q TT R+ A L + L +++P +Y+YF+ + F +      N N LL      DG+  G 
Sbjct: 218 DGQQTTVRELAQLALHLWRDYPDFYRYFAQKDFTWNKISQRNRNPLLAMDIGADGLAVGA 277

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +  +GF IV SL +    ++A + G+ + +ER ++A +L+
Sbjct: 278 SEAAGFGIVGSLSHNGTRVIAAMSGLASDKERAEEARKLL 317


>gi|83590342|ref|YP_430351.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica
           ATCC 39073]
 gi|83573256|gb|ABC19808.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica
           ATCC 39073]
          Length = 412

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/202 (34%), Positives = 120/202 (59%), Gaps = 4/202 (1%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPAS+TK+MT+ +  + + + +  L+  + VS+ A +   S+++L     F  EQ ++A+
Sbjct: 84  YPASMTKLMTMVVAMDMVANGQATLDEPVQVSERAESFGGSEVFLAVGETFPLEQMLIAI 143

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
              SAND + A  E ++GSE+ F  +M+ KAK++G+++T + N  GLHD+   T+A D A
Sbjct: 144 AVASANDAAVAVAEHLAGSEEAFVAMMNAKAKELGLKDTHFANCHGLHDEQNYTSAYDMA 203

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNR---IITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           ++     K +P+  ++ SI+++  R     I+   NK+L      DG KTG+T  +G N+
Sbjct: 204 VIARYALK-YPKIREWTSIKRYTLRKDPLTILDTTNKMLYWYPGTDGFKTGFTDAAGLNL 262

Query: 253 VTSLRYKDDPIVAVVMGMPTSQ 274
           V+++      +VAVVMG+ T Q
Sbjct: 263 VSTVERDGLRLVAVVMGVETPQ 284


>gi|218508407|ref|ZP_03506285.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli Brasil
           5]
          Length = 312

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 108/190 (56%)

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
           + ++ L+T I +SK AA Q  +K+Y K     T +  +  L+ +SAND++ A  E + G+
Sbjct: 1   AGQISLDTPIVMSKRAAAQPAAKMYFKPGQKLTLDSALKILMVKSANDIAVAVAEAVGGT 60

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           ++ F   M+ +A K+GM ++ + N +GL  K Q TTARD A+L + LR++FPQY  YFS+
Sbjct: 61  QEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALRRDFPQYAGYFSL 120

Query: 215 RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
             F    + + N N L+ +    DG+KTG+   SGFN + S       +V+VV+G  +  
Sbjct: 121 EGFTTGQQNVPNLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRTLVSVVLGTDSLA 180

Query: 275 ERDQKALELI 284
            R      L+
Sbjct: 181 ARADATANLL 190


>gi|329893664|ref|ZP_08269798.1| D-alanyl-D-alanine carboxypeptidase [gamma proteobacterium
           IMCC3088]
 gi|328923591|gb|EGG30903.1| D-alanyl-D-alanine carboxypeptidase [gamma proteobacterium
           IMCC3088]
          Length = 389

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 149/267 (55%), Gaps = 23/267 (8%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-----KQDEPRYPASLTKMMT 85
           +G  + +S  +I    E+ A+  Y   +ID      TG+       +E   PASLTK+MT
Sbjct: 11  LGFSVSVSAAIIPAPPEVAARAHY---LIDAT----TGYVIAESNANEQLPPASLTKLMT 63

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLK---EKTYFTTEQGILALIT 137
            Y++   ++  ++  + ++ +S+ A  QNP     S ++L+   E +    E+GI   + 
Sbjct: 64  SYVLSYEIERGRVAFDDKVLISENAWAQNPIFKGSSLMWLEPGMEVSISDLEKGI---VI 120

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND + A  E ++G+E  FA +M+  A+++GM ++ ++N+ GL   N +TTA D A+L
Sbjct: 121 SSGNDATVAIAEHLAGNETAFADMMNTHAQRLGMNDSYFENSHGLPSPNHLTTAHDLALL 180

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              + ++FP +Y+ ++ R + + N    N N LL +  ++DG+KTGYT  +G+ +V+S +
Sbjct: 181 AKAIIQDFPTHYQIYAERDYTFNNIKQYNRNTLLGEDPSVDGLKTGYTSEAGYGLVSSAK 240

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELI 284
             D  +++VV+G  +++ R  +   L+
Sbjct: 241 RGDMRLISVVLGTSSAKTRASETRSLL 267


>gi|167040194|ref|YP_001663179.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X514]
 gi|256752060|ref|ZP_05492928.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300914278|ref|ZP_07131594.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X561]
 gi|307724486|ref|YP_003904237.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X513]
 gi|166854434|gb|ABY92843.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X514]
 gi|256749070|gb|EEU62106.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300889213|gb|EFK84359.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X561]
 gi|307581547|gb|ADN54946.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X513]
          Length = 381

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/261 (32%), Positives = 150/261 (57%), Gaps = 9/261 (3%)

Query: 30  LMGKILFLSIIM--ISMASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMT 85
           L+  IL +S ++     A  L+ K K S+I+I+ N  Q+  +++D  +P  PAS+TK+MT
Sbjct: 9   LVSVILAISFVLNGTVYADTLNLKSK-SAILIETNTGQIL-YEKDSHKPLPPASVTKVMT 66

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           L +  E + S K+ +  ++  SK A     +++YL+     T +  + A+   SAND S 
Sbjct: 67  LLLAIEAIDSGKIKITDKVVTSKHAFDMGGTQIYLEVGEEMTVDDLMKAIAMNSANDASV 126

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E+I+G+E+ F  +M+ +AK++G +NT +KNA+GL ++  +T+  D A++   L K+ 
Sbjct: 127 ALAEYIAGTEENFVEMMNKRAKELGAKNTTFKNATGLPEEGHLTSVYDIAMISRELVKH- 185

Query: 206 PQYYKYFSIRKFRYRNR--IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
              +KY + +    RN    + N NKLL +   +DGIKTG T  + + +  + +  D  +
Sbjct: 186 ESIFKYLTNKLDSLRNGKFSLINTNKLLWRYKGVDGIKTGSTSEALYCMAATAKRGDTRL 245

Query: 264 VAVVMGMPTSQERDQKALELI 284
           +AVV G P S+ R  +A +L+
Sbjct: 246 IAVVFGAPDSETRFSEAAKLL 266


>gi|159043475|ref|YP_001532269.1| serine-type D-Ala-D-Ala carboxypeptidase [Dinoroseobacter shibae
           DFL 12]
 gi|157911235|gb|ABV92668.1| serine-type D-Ala-D-Ala carboxypeptidase [Dinoroseobacter shibae
           DFL 12]
          Length = 393

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 138/255 (54%), Gaps = 12/255 (4%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQ-SKKLHLNT 102
           A E  A+  Y   V+DV    +   K  D P  PAS++K+MTLY++FE L+ +  + L+T
Sbjct: 24  AFETRAEAAY---VVDVTTGTVLLEKNADVPLPPASMSKLMTLYMLFEALEKNPAVTLDT 80

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
              VS  A  +  S ++L E+   T E  I  +I +S ND +    E ++G+E+ F+ LM
Sbjct: 81  TFRVSARAMAKGGSTMFLTERDRPTAEDLIKGIIVQSGNDATVVVAEGLAGTEEAFSRLM 140

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
           + K   IG+  + + N+SG  D     + RD  IL   + +++P+YY YF++ ++ +  R
Sbjct: 141 TEKGAAIGLTQSTFTNSSGWPDPQHRMSMRDLGILTQRIIEDYPEYYGYFAMSEWGFDGR 200

Query: 223 IIT---NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
                 N N LL      DG+KTG+T+ +G+ +V S +     I+ V+ G+ T + R ++
Sbjct: 201 APQNRFNRNPLLKLDIGADGLKTGHTQEAGYGLVGSAQQGARRIIFVITGLETDRARAEE 260

Query: 280 ALELIT----SFLEK 290
           +  +++     F+EK
Sbjct: 261 SERIVSWAFRQFVEK 275


>gi|22126741|ref|NP_670164.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6
           [Yersinia pestis KIM 10]
 gi|45441099|ref|NP_992638.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|149366701|ref|ZP_01888735.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis CA88-4125]
 gi|218928470|ref|YP_002346345.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis CO92]
 gi|21959762|gb|AAM86415.1|AE013888_11 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6
           [Yersinia pestis KIM 10]
 gi|45435958|gb|AAS61515.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|115347081|emb|CAL19973.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis CO92]
 gi|149291075|gb|EDM41150.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis CA88-4125]
          Length = 432

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 140/251 (55%), Gaps = 15/251 (5%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A ++ AK   + +++D N  ++      + R  PASLTK+M+ Y+I + +++ K+  +  
Sbjct: 66  APQIDAK---AYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDL 122

Query: 104 IPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           + V K A AT NP     S ++LK             ++ +S ND S A  ++++GS+  
Sbjct: 123 VTVGKDAWATGNPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQDS 182

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F  LM+N AK +G+ NT +    GL    Q +TARD A+LG  L ++ P+ Y     ++F
Sbjct: 183 FVGLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEF 242

Query: 218 RYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP--IVAVVMGMPTSQ 274
            +     TN N+LL N   N+DG+KTGYT  +G+N+V S    D P  +++VV+G P+ +
Sbjct: 243 TFNKIRQTNRNRLLWNSSLNVDGMKTGYTNGAGYNLVASA--TDGPMRLISVVLGAPSDK 300

Query: 275 ERDQKALELIT 285
            R  ++ +L+T
Sbjct: 301 VRFSESEKLLT 311


>gi|186894765|ref|YP_001871877.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Yersinia
           pseudotuberculosis PB1/+]
 gi|186697791|gb|ACC88420.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Yersinia
           pseudotuberculosis PB1/+]
          Length = 401

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 140/251 (55%), Gaps = 15/251 (5%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A ++ AK   + +++D N  ++      + R  PASLTK+M+ Y+I + +++ K+  +  
Sbjct: 35  APQIDAK---AYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDL 91

Query: 104 IPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           + V K A AT NP     S ++LK             ++ +S ND S A  ++++GS+  
Sbjct: 92  VTVGKDAWATGNPALRGSSLMFLKPGDQVKVSDLNKGIVIQSGNDASIALADYVAGSQDS 151

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F  LM+N AK +G+ NT +    GL    Q +TARD A+LG  L ++ P+ Y     ++F
Sbjct: 152 FVGLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEF 211

Query: 218 RYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP--IVAVVMGMPTSQ 274
            +     TN N+LL N   N+DG+KTGYT  +G+N+V S    D P  +++VV+G P+ +
Sbjct: 212 TFNKIRQTNRNRLLWNSSLNVDGMKTGYTNGAGYNLVASA--TDGPMRLISVVLGAPSDK 269

Query: 275 ERDQKALELIT 285
            R  ++ +L+T
Sbjct: 270 VRFSESEKLLT 280


>gi|153947077|ref|YP_001401624.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pseudotuberculosis IP
           31758]
 gi|152958572|gb|ABS46033.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pseudotuberculosis IP
           31758]
          Length = 400

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 140/251 (55%), Gaps = 15/251 (5%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A ++ AK   + +++D N  ++      + R  PASLTK+M+ Y+I + +++ K+  +  
Sbjct: 34  APQIDAK---AYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDL 90

Query: 104 IPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           + V K A AT NP     S ++LK             ++ +S ND S A  ++++GS+  
Sbjct: 91  VTVGKDAWATGNPALRGSSLMFLKPGDQVKVSDLNKGIVIQSGNDASIALADYVAGSQDS 150

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F  LM+N AK +G+ NT +    GL    Q +TARD A+LG  L ++ P+ Y     ++F
Sbjct: 151 FVGLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEF 210

Query: 218 RYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP--IVAVVMGMPTSQ 274
            +     TN N+LL N   N+DG+KTGYT  +G+N+V S    D P  +++VV+G P+ +
Sbjct: 211 TFNKIRQTNRNRLLWNSSLNVDGMKTGYTNGAGYNLVASA--TDGPMRLISVVLGAPSDK 268

Query: 275 ERDQKALELIT 285
            R  ++ +L+T
Sbjct: 269 VRFSESEKLLT 279


>gi|165924684|ref|ZP_02220516.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|166009807|ref|ZP_02230705.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166211384|ref|ZP_02237419.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167419833|ref|ZP_02311586.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424129|ref|ZP_02315882.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|270487038|ref|ZP_06204112.1| serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pestis KIM D27]
 gi|294503318|ref|YP_003567380.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Z176003]
 gi|165923744|gb|EDR40876.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991203|gb|EDR43504.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166207155|gb|EDR51635.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166962574|gb|EDR58595.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167056978|gb|EDR66741.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|262361357|gb|ACY58078.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis D106004]
 gi|262365105|gb|ACY61662.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis D182038]
 gi|270335542|gb|EFA46319.1| serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pestis KIM D27]
 gi|294353777|gb|ADE64118.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Z176003]
          Length = 400

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 140/251 (55%), Gaps = 15/251 (5%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A ++ AK   + +++D N  ++      + R  PASLTK+M+ Y+I + +++ K+  +  
Sbjct: 34  APQIDAK---AYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDL 90

Query: 104 IPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           + V K A AT NP     S ++LK             ++ +S ND S A  ++++GS+  
Sbjct: 91  VTVGKDAWATGNPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQDS 150

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F  LM+N AK +G+ NT +    GL    Q +TARD A+LG  L ++ P+ Y     ++F
Sbjct: 151 FVGLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEF 210

Query: 218 RYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP--IVAVVMGMPTSQ 274
            +     TN N+LL N   N+DG+KTGYT  +G+N+V S    D P  +++VV+G P+ +
Sbjct: 211 TFNKIRQTNRNRLLWNSSLNVDGMKTGYTNGAGYNLVASA--TDGPMRLISVVLGAPSDK 268

Query: 275 ERDQKALELIT 285
            R  ++ +L+T
Sbjct: 269 VRFSESEKLLT 279


>gi|51595692|ref|YP_069883.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pseudotuberculosis IP
           32953]
 gi|108812820|ref|YP_648587.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Nepal516]
 gi|145599648|ref|YP_001163724.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Pestoides F]
 gi|162419917|ref|YP_001606057.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Angola]
 gi|165936271|ref|ZP_02224840.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|167468020|ref|ZP_02332724.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis FV-1]
 gi|170024965|ref|YP_001721470.1| Serine-type D-Ala-D-Ala carboxypeptidase [Yersinia
           pseudotuberculosis YPIII]
 gi|229841277|ref|ZP_04461436.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843380|ref|ZP_04463526.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229895754|ref|ZP_04510924.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Pestoides A]
 gi|229903242|ref|ZP_04518355.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Nepal516]
 gi|51588974|emb|CAH20591.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pseudotuberculosis IP
           32953]
 gi|108776468|gb|ABG18987.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Yersinia pestis Nepal516]
 gi|145211344|gb|ABP40751.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Pestoides F]
 gi|162352732|gb|ABX86680.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Angola]
 gi|165915885|gb|EDR34493.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|169751499|gb|ACA69017.1| Serine-type D-Ala-D-Ala carboxypeptidase [Yersinia
           pseudotuberculosis YPIII]
 gi|229679012|gb|EEO75115.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Nepal516]
 gi|229689727|gb|EEO81788.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697643|gb|EEO87690.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229700677|gb|EEO88706.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Pestoides A]
          Length = 401

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 140/251 (55%), Gaps = 15/251 (5%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A ++ AK   + +++D N  ++      + R  PASLTK+M+ Y+I + +++ K+  +  
Sbjct: 35  APQIDAK---AYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDL 91

Query: 104 IPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           + V K A AT NP     S ++LK             ++ +S ND S A  ++++GS+  
Sbjct: 92  VTVGKDAWATGNPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQDS 151

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F  LM+N AK +G+ NT +    GL    Q +TARD A+LG  L ++ P+ Y     ++F
Sbjct: 152 FVGLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEF 211

Query: 218 RYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP--IVAVVMGMPTSQ 274
            +     TN N+LL N   N+DG+KTGYT  +G+N+V S    D P  +++VV+G P+ +
Sbjct: 212 TFNKIRQTNRNRLLWNSSLNVDGMKTGYTNGAGYNLVASA--TDGPMRLISVVLGAPSDK 269

Query: 275 ERDQKALELIT 285
            R  ++ +L+T
Sbjct: 270 VRFSESEKLLT 280


>gi|302879284|ref|YP_003847848.1| Beta-lactamase [Gallionella capsiferriformans ES-2]
 gi|302582073|gb|ADL56084.1| Beta-lactamase [Gallionella capsiferriformans ES-2]
          Length = 381

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 139/263 (52%), Gaps = 9/263 (3%)

Query: 31  MGKILFLSIIMISMASELHAKPKY------SSIVIDVNKNQMTGFKQDEPRY-PASLTKM 83
           M   LF + +++S  S    +P+       S ++ D + NQ+   +    R  PASLTK+
Sbjct: 1   MKSFLFFAGLLLSFTSYALQQPEPPVLASKSYLLYDFSSNQILVNQNGHARLEPASLTKL 60

Query: 84  MTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           MT Y+ F  ++  KL L+    +PV     +   S++ LK     T ++ +  LI +S N
Sbjct: 61  MTAYLTFSAIKQDKLKLDQTLTVPVDAPRNSSGESRMLLKPGQSVTVDELLHGLIVQSGN 120

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D +      ISGSE  F   M+ +A+++GM+NT + N  G+ +    ++A D AIL   L
Sbjct: 121 DAANTLAVQISGSEATFVEQMNKEAQRMGMKNTHFVNPVGMPNAQHYSSAYDMAILAAAL 180

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
            +++P++Y  F +R + + N    N N+LL      DG+KTG+T  +GF +V S +    
Sbjct: 181 IRDYPEHYPLFGLRDYTFNNVTQANRNRLLWLDPYADGLKTGHTETAGFCLVGSAKRDKR 240

Query: 262 PIVAVVMGMPTSQERDQKALELI 284
            +++VV+G  +  +R  ++ +L+
Sbjct: 241 RLISVVLGADSDNQRASESQKLL 263


>gi|289578311|ref|YP_003476938.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           italicus Ab9]
 gi|289528024|gb|ADD02376.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           italicus Ab9]
          Length = 381

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 147/253 (58%), Gaps = 9/253 (3%)

Query: 30  LMGKILFLSIIM--ISMASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMT 85
           L+  I+ +S I+   + A  L+ K K S+I+++ N  Q+  +++D  +P  PAS+TK+MT
Sbjct: 9   LVSVIIAISFILDATAYADTLNLKAK-SAILMEANTGQIL-YEKDSHKPLPPASVTKVMT 66

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           L +  E + S K+ ++ ++  SK A     +++YL+     T +  + A+   SAND S 
Sbjct: 67  LLLAIEAIDSGKIKISDKVVTSKHAFDMGGTQIYLEIGEEMTVDDLMKAIAMNSANDASV 126

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E+I+G+E+ F  +M+ +AK++G +NT +KNA+GL D+  +T+  D A++   L K+ 
Sbjct: 127 ALAEYIAGTEENFVEIMNKRAKELGAKNTTFKNATGLPDEGHLTSVYDIAMISRELVKH- 185

Query: 206 PQYYKYFSIRKFRYRNR--IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
              +KY + +    RN    + N NKLL +   +DGIKTG T  + + +  + +  D  +
Sbjct: 186 ESIFKYLTNKLDSLRNGKFSLINTNKLLWRYKGVDGIKTGSTSEALYCMAATAKRADTRL 245

Query: 264 VAVVMGMPTSQER 276
           +AVV G P S+ R
Sbjct: 246 IAVVFGAPDSETR 258


>gi|74316284|ref|YP_314024.1| serine-type D-ala-D-ala carboxypeptidase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74055779|gb|AAZ96219.1| serine-type D-ala-D-ala carboxypeptidase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 377

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 137/262 (52%), Gaps = 4/262 (1%)

Query: 33  KILFLSIIMISMASELHAKPKYSS---IVID-VNKNQMTGFKQDEPRYPASLTKMMTLYI 88
           K L+L++  +  AS + A    ++   +++D  +  ++   + D P  PASLT++MT+Y+
Sbjct: 8   KFLWLTLAWLLSASAIAAPTGIAARAWVIVDQTSGRELASHQPDLPLAPASLTQLMTVYV 67

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           +   ++   L L+ ++ V   AA  + ++++LK       +  + A++ +SA+D +    
Sbjct: 68  LLGDIRRNALRLDAEVRVPDAAAEADGARVFLKPGERVRVDTLLRAILVQSASDATVTLA 127

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
               GSE  F   M+ +A ++GM+ T + NA+GL     +++ARD A+LG  L +  P  
Sbjct: 128 TATDGSEAAFVERMNREAARLGMKRTHFANATGLAQPGHVSSARDLAVLGRALLREHPAQ 187

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              F+ ++F        N N+LL +   + G+K G    SG++ V S +  +   VAVV+
Sbjct: 188 QALFAQKEFTLDGLTYYNANRLLWRDGTVTGLKVGRNPESGYSAVASAQRGEQRRVAVVL 247

Query: 269 GMPTSQERDQKALELITSFLEK 290
           G  +  +R Q AL L+    EK
Sbjct: 248 GARSDAQRTQDALRLLNYGFEK 269


>gi|297180033|gb|ADI16258.1| d-alanyl-d-alanine carboxypeptidase [uncultured bacterium
           HF0010_16H03]
          Length = 384

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 138/262 (52%), Gaps = 8/262 (3%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A EL+ K   S I+I+ N N +   F       PAS+TK+MT Y++ + + +  + L  Q
Sbjct: 23  APELNLK---SYILIEPNTNTVIAEFNSSSEIEPASMTKIMTSYVVADQIANGLISLEDQ 79

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           + +S+ A     SK++++     +    +  +I +S ND S A  E+  G+E+ F  LM+
Sbjct: 80  VLISEKAWRMGGSKMFIEAGKKVSISNLLKGIIIQSGNDASVAISEYAGGTERGFVDLMN 139

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI 223
             A  +GM NTI++N++GL D+N  ++A+D A L       FP  Y  +  ++F + N  
Sbjct: 140 AYADSLGMNNTIFQNSTGLPDENHFSSAKDLATLTSNFIIKFPDIYSLYKEKQFTFNNIK 199

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER---DQKA 280
             N NKLL +  + DG+KTG+T  +G+ +V S +  D  ++ VV G  T   R    Q+ 
Sbjct: 200 QLNRNKLLWRDESSDGVKTGHTEAAGYCLVGSAKRGDMRLITVVAGSDTDNNRFLASQRL 259

Query: 281 LELITSFLE-KKTLKHQQTHRK 301
           LE    F   +K L   + ++K
Sbjct: 260 LEYGFRFFATQKVLNANEEYKK 281


>gi|242238535|ref|YP_002986716.1| D-alanyl-D-alanine carboxypeptidase fraction A [Dickeya dadantii
           Ech703]
 gi|242130592|gb|ACS84894.1| Beta-lactamase [Dickeya dadantii Ech703]
          Length = 403

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/273 (31%), Positives = 148/273 (54%), Gaps = 17/273 (6%)

Query: 30  LMGKILFLSIIMISMASELHAK------PKYSS---IVIDVNKNQMTGFKQ-DEPRYPAS 79
           ++G +L L +   S A +++ K      P   +   I+ID N  ++   K  D  R PAS
Sbjct: 14  VLGTLLVLGVSAFSHAEDINLKTMIPAVPDIDAEAYILIDYNSGKVLAEKNADVRRNPAS 73

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGIL 133
           LTKMMT Y+I + +++ K++ N  + + K A AT NP     S ++LK            
Sbjct: 74  LTKMMTSYVIGQAIKAGKINPNDIVTIGKDAWATGNPDFQGSSLMFLKPGDRVPVHMLNK 133

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  ++++GS+  F  LM+   K +G+QNT +K   GL  + Q ++ARD
Sbjct: 134 GIILQSGNDACVAMADYVAGSQDAFISLMNGYVKSLGLQNTQFKTVHGLDAEGQYSSARD 193

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A++G  L ++ P  Y  +  ++F + N    N N LL +   ++DGIKTG+T ++G+N+
Sbjct: 194 MALIGQALIRDVPNEYATYKEKEFTFNNIRQMNRNGLLWDSSLSVDGIKTGHTASAGYNL 253

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           V S       +++ V+G  T + R+ ++ +L+T
Sbjct: 254 VASATEGQMRLISAVLGGRTFKGRESESKKLLT 286


>gi|167915042|ref|ZP_02502133.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 112]
          Length = 333

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 131/242 (54%), Gaps = 18/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK---TA 110
           S +V+D +  +  G    D  R PASLTK+MT Y+ F+ L+   L  +  + V+     +
Sbjct: 58  SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERDALRWDDTVTVAADDIAS 117

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             ++ +++YL           +  LI  SAND +    + I GS   FA +M++ A+++G
Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ + + SG+   +  +TA D +IL   L ++FP +Y + S R F Y     TN N+L
Sbjct: 178 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSL---------RYKDDPIVAVVMGMPTSQER--DQK 279
           L    ++DG+KTG+T  +G+ +V +          R++   ++AV++G PT ++R  D +
Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHR---VIAVLLGEPTEKQRLADAR 294

Query: 280 AL 281
           AL
Sbjct: 295 AL 296


>gi|76818571|ref|YP_335397.1| peptidase [Burkholderia pseudomallei 1710b]
 gi|126456879|ref|YP_001075694.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106a]
 gi|242313141|ref|ZP_04812158.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106b]
 gi|254265595|ref|ZP_04956460.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1710a]
 gi|76583044|gb|ABA52518.1| family S11 unassigned peptidase [Burkholderia pseudomallei 1710b]
 gi|126230647|gb|ABN94060.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106a]
 gi|242136380|gb|EES22783.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106b]
 gi|254216597|gb|EET05982.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1710a]
          Length = 333

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 131/242 (54%), Gaps = 18/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK---TA 110
           S +V+D +  +  G    D  R PASLTK+MT Y+ F+ L+   L  +  + V+     +
Sbjct: 58  SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERDALRWDDTVTVAADDIAS 117

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             ++ +++YL           +  LI  SAND +    + I GS   FA +M++ A+++G
Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ + + SG+   +  +TA D +IL   L ++FP +Y + S R F Y     TN N+L
Sbjct: 178 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSL---------RYKDDPIVAVVMGMPTSQER--DQK 279
           L    ++DG+KTG+T  +G+ +V +          R++   ++AV++G PT ++R  D +
Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHR---VIAVLLGEPTEKQRLADAR 294

Query: 280 AL 281
           AL
Sbjct: 295 AL 296


>gi|302389828|ref|YP_003825649.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter
           oceani DSM 16646]
 gi|302200456|gb|ADL08026.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter
           oceani DSM 16646]
          Length = 390

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/259 (32%), Positives = 136/259 (52%), Gaps = 9/259 (3%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
           R I L+  I F+S+     A  L      S+I+ID     +   K   E   PAS+TK+M
Sbjct: 11  RKIALLSLIFFISVNFTVYAQPLPEIKSPSAILIDAGTGTVLYEKNAHEKLEPASITKIM 70

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TL +  E ++  K+ L  ++ +S+ A     S+++L      T E  +  +   SAND S
Sbjct: 71  TLLVALEAIEQGKVKLTDKVKISERAWKTGGSQVFLGPGEEQTLETLLKCITIASANDAS 130

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  E+I GS + F  +M++KAK +GM NT + N  GL D N  TTA D A++   L K 
Sbjct: 131 VAVAEYIGGSVEGFVKMMNDKAKALGMNNTNFTNPHGLSDPNHYTTAYDIALMSRELVK- 189

Query: 205 FPQYYKY--FSIRKFRYRNR-----IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
           +P+++++    I    + ++     ++ N NKLL K   +DG+KTG+   +G+    S +
Sbjct: 190 YPKFFEWSTVWIDYLEHTDKEREATMLANTNKLLGKYEGLDGLKTGFHAKAGYCFAGSAK 249

Query: 258 YKDDPIVAVVMGMPTSQER 276
             D  +++VV+  P+S ER
Sbjct: 250 RGDLRLISVVLNSPSSAER 268


>gi|167819885|ref|ZP_02451565.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 91]
          Length = 309

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 131/242 (54%), Gaps = 18/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK---TA 110
           S +V+D +  +  G    D  R PASLTK+MT Y+ F+ L+   L  +  + V+     +
Sbjct: 58  SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERDALRWDDTVTVAADDIAS 117

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             ++ +++YL           +  LI  SAND +    + I GS   FA +M++ A+++G
Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ + + SG+   +  +TA D +IL   L ++FP +Y + S R F Y     TN N+L
Sbjct: 178 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSL---------RYKDDPIVAVVMGMPTSQER--DQK 279
           L    ++DG+KTG+T  +G+ +V +          R++   ++AV++G PT ++R  D +
Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHR---VIAVLLGEPTEKQRLADAR 294

Query: 280 AL 281
           AL
Sbjct: 295 AL 296


>gi|229111549|ref|ZP_04241100.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock1-15]
 gi|228671931|gb|EEL27224.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock1-15]
          Length = 385

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/271 (31%), Positives = 145/271 (53%), Gaps = 22/271 (8%)

Query: 34  ILFLSIIMISMASELHAKPK-------------YSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           +L LS   +S A     KP+              S+IVI+ +  ++   K  +E   PAS
Sbjct: 1   MLLLSGTSVSFAQSEKTKPEKTEETTPKLAEQASSAIVIEQDTGKVLFDKNPNEKLPPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MT+ +I E ++  KL L  ++  S+ AA+   S+++L+     T  + +  +   S
Sbjct: 61  MTKIMTMLLIMEEVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTVNEMLKGIAIAS 120

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG- 198
            ND S A  E I+GSE+ F  +M+ KAK +G++NT ++N +GL  K+  +TA D AI+  
Sbjct: 121 GNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMAR 180

Query: 199 -----ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
                 L+RK   +Y  Y  +R+   +   + N NKL+     +DG+KTG+T  + + + 
Sbjct: 181 ELMKYPLIRKYTGKYEDY--LREDTDKKFWLVNTNKLVRFYPGVDGVKTGFTTEAKYCLT 238

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            S       +++VVMG PTS+ER+ +  +L+
Sbjct: 239 ASAEKNGMRVISVVMGAPTSKERNNQVTKLL 269


>gi|291559238|emb|CBL38038.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
           SSC/2]
          Length = 399

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 131/244 (53%), Gaps = 16/244 (6%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
           +D+   PAS+TK+M+L +IFE L+  K+ L   + VS+ AA+   S+++L+       + 
Sbjct: 60  KDKELAPASVTKIMSLLLIFEDLKQGKIKLTDTVTVSEHAASMGGSQVFLETGEKQQVQT 119

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            I  ++  SAND   A  E + GSE+ F   M+ KA+++GM++T ++NA GL  K  +T+
Sbjct: 120 LIKCVVISSANDAVVALAEHVCGSEEAFVSRMNKKARELGMKHTTFQNACGLDAKGHVTS 179

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII------------TNHNKLLNKMHNID 238
           A D A++   L + +P+ +KY  I    + + II            +N NKL+ + H   
Sbjct: 180 AYDIALMTRELAQRYPEVFKYTKI----WMDTIIHKTKKGEKEFGLSNTNKLIRQYHGCT 235

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
           G+KTG T  +GF +  +       ++AVVMG  +S+ R + A  L+          H +T
Sbjct: 236 GMKTGSTGKAGFCLSATATRNKIHMIAVVMGCESSKARIKDARILLDYGFSNCQRIHSET 295

Query: 299 HRKD 302
            RK+
Sbjct: 296 TRKE 299


>gi|239904889|ref|YP_002951627.1| putative D-alanyl-D-alanine carboxypeptidase [Desulfovibrio
           magneticus RS-1]
 gi|239794752|dbj|BAH73741.1| putative D-alanyl-D-alanine carboxypeptidase [Desulfovibrio
           magneticus RS-1]
          Length = 386

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 117/209 (55%), Gaps = 1/209 (0%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK++TLYI+F+ ++  +L     I VS  AATQ  S + L+          I  + 
Sbjct: 144 PASLTKVLTLYILFDAIRQGRLRPWDVIEVSPRAATQGGSNMRLRPGEQVKVTDLIKGIA 203

Query: 137 TRSANDVSTAFGEFI-SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
             SAND   A  + + +G+ + F  LM++ AK++GM N+++ N +GL    Q+TTARD  
Sbjct: 204 VASANDACMAIADNLENGNAEAFVALMNDTAKRLGMTNSVFFNPNGLPADGQVTTARDML 263

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
            L     + FP+     S++ F + NR   N N LL +   +DG+KTG+   SG+NIV +
Sbjct: 264 KLAAAYLEQFPKSLTIHSMQFFTHNNRQRHNANSLLGRYEGVDGLKTGFVCASGYNIVAT 323

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELI 284
               D  ++AVV+G    + R+++  +L+
Sbjct: 324 AMRGDTRLIAVVLGSRNPRVRERETAKLL 352


>gi|126444942|ref|YP_001062743.1| peptidase [Burkholderia pseudomallei 668]
 gi|134283712|ref|ZP_01770410.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 305]
 gi|167906685|ref|ZP_02493890.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|237510538|ref|ZP_04523253.1| family S11 unassigned peptidase [Burkholderia pseudomallei MSHR346]
 gi|126224433|gb|ABN87938.1| family S11 unassigned peptidase [Burkholderia pseudomallei 668]
 gi|134244894|gb|EBA44990.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 305]
 gi|235002743|gb|EEP52167.1| family S11 unassigned peptidase [Burkholderia pseudomallei MSHR346]
          Length = 333

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 131/242 (54%), Gaps = 18/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK---TA 110
           S +V+D +  +  G    D  R PASLTK+MT Y+ F+ L+   L  +  + V+     +
Sbjct: 58  SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERAALRWDDTVTVAADDIAS 117

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             ++ +++YL           +  LI  SAND +    + I GS   FA +M++ A+++G
Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ + + SG+   +  +TA D +IL   L ++FP +Y + S R F Y     TN N+L
Sbjct: 178 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSL---------RYKDDPIVAVVMGMPTSQER--DQK 279
           L    ++DG+KTG+T  +G+ +V +          R++   ++AV++G PT ++R  D +
Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHR---VIAVLLGEPTEKQRLADAR 294

Query: 280 AL 281
           AL
Sbjct: 295 AL 296


>gi|293395975|ref|ZP_06640256.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM
           4582]
 gi|291421473|gb|EFE94721.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM
           4582]
          Length = 382

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 7/224 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           D+ R PASLTK+MT  +I   L   K+ L+  + V K A A  NP     S ++LK    
Sbjct: 50  DQRRNPASLTKLMTGLVIDHALDQHKISLDDVVTVGKDAWAAGNPVFKGSSLMFLKPGDR 109

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            T       +I  S ND   A  ++++GS+  F  LM+NKA ++G++NT ++   GL   
Sbjct: 110 VTVRDLSRGIIIDSGNDACVAMADYVAGSQTAFVDLMNNKAAQLGLKNTHFETVHGLDAP 169

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGY 244
            Q TTA D A++   +  + P  Y  +S R   +      N N LL +K  ++DG+KTG+
Sbjct: 170 GQYTTAGDLAVISRAIIMSEPAEYHMYSERSLTWNGITQQNRNGLLWDKTLHVDGLKTGH 229

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           T ++GFNI+ S    D  ++AVVMG  + + R+++A +L++  L
Sbjct: 230 TESAGFNIIASATEGDRRLIAVVMGGKSPKGREEQARKLLSWGL 273


>gi|167742710|ref|ZP_02415484.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 14]
 gi|167849724|ref|ZP_02475232.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei B7210]
          Length = 310

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 131/242 (54%), Gaps = 18/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK---TA 110
           S +V+D +  +  G    D  R PASLTK+MT Y+ F+ L+   L  +  + V+     +
Sbjct: 58  SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERDALRWDDTVTVAADDIAS 117

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             ++ +++YL           +  LI  SAND +    + I GS   FA +M++ A+++G
Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ + + SG+   +  +TA D +IL   L ++FP +Y + S R F Y     TN N+L
Sbjct: 178 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSL---------RYKDDPIVAVVMGMPTSQER--DQK 279
           L    ++DG+KTG+T  +G+ +V +          R++   ++AV++G PT ++R  D +
Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHR---VIAVLLGEPTEKQRLADAR 294

Query: 280 AL 281
           AL
Sbjct: 295 AL 296


>gi|260428585|ref|ZP_05782564.1| D-alanyl-D-alanine carboxypeptidase DacC [Citreicella sp. SE45]
 gi|260423077|gb|EEX16328.1| D-alanyl-D-alanine carboxypeptidase DacC [Citreicella sp. SE45]
          Length = 392

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 121/218 (55%), Gaps = 5/218 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   PAS++K+MTLY+ FE +   +L L+ ++PVS+ A +   S ++L  +     E  
Sbjct: 51  DEAMPPASMSKLMTLYMAFEAIHDGRLTLDERLPVSEHAMSYGGSTMFLNTQDRVRVEDL 110

Query: 132 ILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           +  +I  S ND      E +S  G+E  FA LM+ +A+++GM N+ + NASG    N   
Sbjct: 111 LRGIIVLSGNDACAVIAEALSPNGTEPGFAELMTRRAQQLGMTNSTFANASGWPAANHRM 170

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI---ITNHNKLLNKMHNIDGIKTGYTR 246
           + RD  +L   + ++FP++Y  F+ ++F +  R    + N N LL      DG+KTG+T 
Sbjct: 171 SMRDLTLLATRIIEDFPEFYPIFAEKQFAFDGRAPSNVNNRNPLLRLNIGADGLKTGHTA 230

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +G+ +V S +  +  +V  + G+ + + R +++  ++
Sbjct: 231 EAGYGLVGSAKQGERRVVFAMTGLDSERARAEESESIV 268


>gi|228954361|ref|ZP_04116387.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228805293|gb|EEM51886.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 396

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/242 (33%), Positives = 137/242 (56%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 41  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 100

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 101 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 160

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 161 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMKYPLIRKYTGKYEDY--LREDTDKKF 218

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S       I++VVMG PTS+ER+ +  +
Sbjct: 219 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRIISVVMGAPTSKERNNQVTK 278

Query: 283 LI 284
           L+
Sbjct: 279 LL 280


>gi|53722262|ref|YP_111247.1| peptidase [Burkholderia pseudomallei K96243]
 gi|52212676|emb|CAH38706.1| family S11 unassigned peptidase [Burkholderia pseudomallei K96243]
          Length = 333

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 131/242 (54%), Gaps = 18/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK---TA 110
           S +V+D +  +  G    D  R PASLTK+MT Y+ F+ L+   L  +  + V+     +
Sbjct: 58  SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERDALRWDDTVTVAADDIAS 117

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             ++ +++YL           +  LI  SAND +    + I GS   FA +M++ A+++G
Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ + + SG+   +  +TA D +IL   L ++FP +Y + S R F Y     TN N+L
Sbjct: 178 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSL---------RYKDDPIVAVVMGMPTSQER--DQK 279
           L    ++DG+KTG+T  +G+ +V +          R++   ++AV++G PT ++R  D +
Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHR---VIAVLLGEPTEKQRLADAR 294

Query: 280 AL 281
           AL
Sbjct: 295 AL 296


>gi|320177827|gb|EFW52813.1| D-alanyl-D-alanine carboxypeptidase [Shigella boydii ATCC 9905]
 gi|332088903|gb|EGI94015.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella boydii 5216-82]
          Length = 400

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 126/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 59  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDARATGNPALRGSSVMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 119 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 178

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 179 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 233

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           IKTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 234 IKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279


>gi|229019288|ref|ZP_04176114.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH1273]
 gi|229025532|ref|ZP_04181942.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH1272]
 gi|228735814|gb|EEL86399.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH1272]
 gi|228741973|gb|EEL92147.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH1273]
          Length = 385

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/271 (32%), Positives = 146/271 (53%), Gaps = 22/271 (8%)

Query: 34  ILFLSIIMISMASELHAK--------PKY-----SSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           +LFLS   +S A     K        PK      S+IVI+ +  ++   K  +E   PAS
Sbjct: 1   MLFLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFDKNPNEKLPPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MT+ +I E ++  KL L  ++  S+ AA+   S+++L+     T  + +  +   S
Sbjct: 61  MTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTVNEMLKGIAIAS 120

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG- 198
            ND S A  E I+GSE+ F  +M+ KAK +G++NT ++N +GL  K+  +TA D AI+  
Sbjct: 121 GNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMAR 180

Query: 199 -----ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
                 L+RK   +Y  Y  +R+   +   + N NKL+     +DG+KTG+T  + + + 
Sbjct: 181 ELMKYPLIRKYTGKYEDY--LREDTDKKFWLVNTNKLVRFYPGVDGVKTGFTTEAKYCLT 238

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            S       +++VVMG PTS+ER+ +  +L+
Sbjct: 239 ASAEKNGMRVISVVMGAPTSKERNNQVTKLL 269


>gi|332091086|gb|EGI96176.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae
           155-74]
          Length = 400

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 126/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 59  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDARATGNPALRGSSVMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 119 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 178

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 179 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 233

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           IKTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 234 IKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279


>gi|119775724|ref|YP_928464.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella amazonensis
           SB2B]
 gi|119768224|gb|ABM00795.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Shewanella amazonensis SB2B]
          Length = 392

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 122/213 (57%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I   ++   +     + ++K A ++N    SK++++            
Sbjct: 64  PASLTKMMTSYVIGHEMKVGNISPEDDVTITKNAWSKNFPDSSKMFIEVGKTVKAADLNR 123

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E I+G+E  F  +M++ AK++GM ++ ++N+ GL   N  TTA D
Sbjct: 124 GIIIQSGNDACVAMAEHIAGTEDAFVDMMNSWAKQLGMTDSYFENSHGLDSDNHKTTAYD 183

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            AILG  L ++ P+ Y+ +S ++F +      N N LL +K  N+DGIKTG+T  +G+N+
Sbjct: 184 MAILGAALIRDVPEEYRIYSEKEFTFNGIKQYNRNGLLWDKSMNVDGIKTGHTSGAGYNL 243

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           V S    D  +++VVMG  +   R  ++ +L++
Sbjct: 244 VASATQDDMRLISVVMGASSEASRKAESKKLLS 276


>gi|229192288|ref|ZP_04319253.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus ATCC 10876]
 gi|228591238|gb|EEK49092.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus ATCC 10876]
          Length = 385

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 135/237 (56%), Gaps = 9/237 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+ AA+ 
Sbjct: 35  SAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASM 94

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK +G++N
Sbjct: 95  GGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKN 154

Query: 174 TIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           T ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +   + N 
Sbjct: 155 THFQNPTGLPAKDHYSTANDMAIMARELMKYPLIRKYTGKYEDY--LREDTDKKFWLVNT 212

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           NKL+     +DG+KTG+T  + + +  S       I++VVMG PTS+ER+ +  +L+
Sbjct: 213 NKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRIISVVMGAPTSKERNNQVTKLL 269


>gi|228902586|ref|ZP_04066737.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis IBL 4222]
 gi|228857027|gb|EEN01536.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis IBL 4222]
          Length = 385

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 138/242 (57%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 30  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 90  HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMKYPLIRKYTGKYEDY--LREDTDKKF 207

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S +     +++VVMG PTS+ER+ +  +
Sbjct: 208 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAQKNGMRVISVVMGAPTSKERNNEVTK 267

Query: 283 LI 284
           L+
Sbjct: 268 LL 269


>gi|75762410|ref|ZP_00742280.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|218899237|ref|YP_002447648.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           G9842]
 gi|228967109|ref|ZP_04128145.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar sotto str. T04001]
 gi|74490103|gb|EAO53449.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|218543204|gb|ACK95598.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           G9842]
 gi|228792478|gb|EEM40044.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 396

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 138/242 (57%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 41  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 100

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 101 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 160

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 161 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMKYPLIRKYTGKYEDY--LREDTDKKF 218

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S +     +++VVMG PTS+ER+ +  +
Sbjct: 219 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAQKNGMRVISVVMGAPTSKERNNEVTK 278

Query: 283 LI 284
           L+
Sbjct: 279 LL 280


>gi|167625150|ref|YP_001675444.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella halifaxensis
           HAW-EB4]
 gi|167355172|gb|ABZ77785.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella halifaxensis
           HAW-EB4]
          Length = 390

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 131/233 (56%), Gaps = 5/233 (2%)

Query: 57  IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           +++D N  Q+   +   E   PASLTKMMT Y+I   ++   +    ++ +SK A ++N 
Sbjct: 41  VLMDYNTGQIIAEENAYESLNPASLTKMMTSYVIGHEIKVGNVSPTDEVTISKKAWSKNF 100

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++++     T E+    +I +S ND   A  E I+G+E  F  LM++ AK++GMQ
Sbjct: 101 PDSSKMFIEVGKKVTVEELNKGIIIQSGNDACVAMAEHIAGTEDGFVDLMNSWAKQLGMQ 160

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           ++ ++N+ GL   N  +TA D AILG  + ++ P  Y  +  + F Y      N N LL 
Sbjct: 161 DSYFENSHGLDSDNHKSTAYDMAILGAAIIRDVPDEYAVYKEKSFTYNGIKQYNRNGLLW 220

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +K  ++DGIKTG+T  +G+N+VTS       +++VVMG  +   R  ++ +L+
Sbjct: 221 DKSLSVDGIKTGHTSGAGYNLVTSATKDGMRLISVVMGTKSEAARKAESKKLL 273


>gi|194433152|ref|ZP_03065434.1| serine-type D-Ala-D-Ala carboxypeptidase [Shigella dysenteriae
           1012]
 gi|194418649|gb|EDX34736.1| serine-type D-Ala-D-Ala carboxypeptidase [Shigella dysenteriae
           1012]
          Length = 403

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 126/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 62  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDARATGNPALRGSSVMFLKPGDQ 121

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 122 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 181

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 182 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 236

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           IKTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 237 IKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 282


>gi|254477194|ref|ZP_05090580.1| D-alanyl-D-alanine carboxypeptidase [Ruegeria sp. R11]
 gi|214031437|gb|EEB72272.1| D-alanyl-D-alanine carboxypeptidase [Ruegeria sp. R11]
          Length = 405

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 121/213 (56%), Gaps = 5/213 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS++K+MTLY+ FE ++  +L L+ ++PVS+ A +   S ++L  +     E  +  +I
Sbjct: 70  PASMSKLMTLYVAFEAIRDGRLTLDERLPVSEHAMSYKGSTMFLNTQDRVRVEDLLRGII 129

Query: 137 TRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
             S ND      E +S  G+E  FA  M+ +A+++GM+N+ + N++G        + +D 
Sbjct: 130 VLSGNDACVVIAEALSPDGTEAGFARYMTKRAQEMGMENSTFANSNGWPAAGHRMSVQDL 189

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIIT---NHNKLLNKMHNIDGIKTGYTRNSGFN 251
           AIL   L ++FP+YY  F+ ++F +  R  +   N N LL      DG+KTG+T  +G+ 
Sbjct: 190 AILAERLIEDFPEYYPLFAEKRFEFDGRAPSNTRNRNPLLGLGIGADGLKTGHTSEAGYG 249

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +V S +  D  ++ V+ G+ ++  R ++A  ++
Sbjct: 250 LVGSAKQGDRRVIFVITGLDSTNARAEEAEAIV 282


>gi|217418923|ref|ZP_03450430.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           576]
 gi|226198000|ref|ZP_03793572.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|217398227|gb|EEC38242.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           576]
 gi|225929876|gb|EEH25891.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei Pakistan 9]
          Length = 333

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 131/242 (54%), Gaps = 18/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK---TA 110
           S +V+D +  +  G    D  R PASLTK+MT Y+ F+ L+   L  +  + V+     +
Sbjct: 58  SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERAALRWDDTVTVAADDIAS 117

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             ++ +++YL           +  LI  SAND +    + I GS   FA +M++ A+++G
Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ + + SG+   +  +TA D +IL   L ++FP +Y + S R F Y     TN N+L
Sbjct: 178 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSL---------RYKDDPIVAVVMGMPTSQER--DQK 279
           L    ++DG+KTG+T  +G+ +V +          R++   ++AV++G PT ++R  D +
Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHR---VIAVLLGEPTEKQRLADAR 294

Query: 280 AL 281
           AL
Sbjct: 295 AL 296


>gi|167922874|ref|ZP_02509965.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei BCC215]
          Length = 315

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 131/242 (54%), Gaps = 18/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK---TA 110
           S +V+D +  +  G    D  R PASLTK+MT Y+ F+ L+   L  +  + V+     +
Sbjct: 51  SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERDALRWDDTVTVAADDIAS 110

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             ++ +++YL           +  LI  SAND +    + I GS   FA +M++ A+++G
Sbjct: 111 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 170

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ + + SG+   +  +TA D +IL   L ++FP +Y + S R F Y     TN N+L
Sbjct: 171 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 230

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSL---------RYKDDPIVAVVMGMPTSQER--DQK 279
           L    ++DG+KTG+T  +G+ +V +          R++   ++AV++G PT ++R  D +
Sbjct: 231 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHR---VIAVLLGEPTEKQRLADAR 287

Query: 280 AL 281
           AL
Sbjct: 288 AL 289


>gi|228909907|ref|ZP_04073728.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis IBL 200]
 gi|228849742|gb|EEM94575.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis IBL 200]
          Length = 396

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 138/242 (57%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 41  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 100

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 101 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 160

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 161 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMKYPLIRKYTGKYEDY--LREDTDKKF 218

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S +     +++VVMG PTS+ER+ +  +
Sbjct: 219 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAQKNGMRVISVVMGAPTSKERNNEVTK 278

Query: 283 LI 284
           L+
Sbjct: 279 LL 280


>gi|167723745|ref|ZP_02406981.1| family S11 unassigned peptidase [Burkholderia pseudomallei DM98]
          Length = 318

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 131/242 (54%), Gaps = 18/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK---TA 110
           S +V+D +  +  G    D  R PASLTK+MT Y+ F+ L+   L  +  + V+     +
Sbjct: 58  SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERAALRWDDTVTVAADDIAS 117

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             ++ +++YL           +  LI  SAND +    + I GS   FA +M++ A+++G
Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ + + SG+   +  +TA D +IL   L ++FP +Y + S R F Y     TN N+L
Sbjct: 178 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSL---------RYKDDPIVAVVMGMPTSQER--DQK 279
           L    ++DG+KTG+T  +G+ +V +          R++   ++AV++G PT ++R  D +
Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHR---VIAVLLGEPTEKQRLADAR 294

Query: 280 AL 281
           AL
Sbjct: 295 AL 296


>gi|326791361|ref|YP_004309182.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
           DSM 5427]
 gi|326542125|gb|ADZ83984.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
           DSM 5427]
          Length = 396

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 125/221 (56%), Gaps = 8/221 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DEP  PAS+TK+MTL +I E + + K++   ++ +S+ AA    S+++++     T    
Sbjct: 59  DEPLPPASITKVMTLLLINEAVDTGKINWEDKVTISEHAAHMGGSQVFMEPGEEQTVRDL 118

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +   SAND + A  E+I+GSE++F  LM+ +A ++GM +T++KNA GLH +  ++TA
Sbjct: 119 VKCICIASANDAAVAMSEYIAGSEEQFVELMNKRAAELGMTHTVFKNACGLHTEGHVSTA 178

Query: 192 RDQAILGILLRKNFPQYYKYFS--IRKFRYRNR------IITNHNKLLNKMHNIDGIKTG 243
           RD A++   L    P+  K  +  +    +R R       ++N NK+L     I G+KTG
Sbjct: 179 RDIALMSRALVNGHPEITKTLTTWMDTITHRTRRGESEFGLSNTNKMLKWYKGITGLKTG 238

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           YT  +   +  +    +  ++AV+MG    + R Q+A +L+
Sbjct: 239 YTPEAKHCVSATATRDNMGLIAVIMGAADGKTRFQEAGQLL 279


>gi|89899727|ref|YP_522198.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodoferax ferrireducens
           T118]
 gi|89344464|gb|ABD68667.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Rhodoferax ferrireducens T118]
          Length = 414

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 138/257 (53%), Gaps = 7/257 (2%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           ++A    A P  + +++D +  + +     DEP  PASLTKMMT Y++ + L+S KL   
Sbjct: 57  TLAGSPPALPAKAWLLMDFDSGEVLASANPDEPLPPASLTKMMTSYLVEQALRSGKLKQT 116

Query: 102 TQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
             + VS+ A    +   S +YL   +  T    +  +I +S ND S A  E ++GSE+ F
Sbjct: 117 DLVSVSQNAWCRGSSTESCMYLPLNSQATVIDILRGIIIQSGNDASKAIAEHMAGSEEGF 176

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           A LM+ +A ++GM +T + N +GL D    ++ARD AIL   +  +   YY  ++ R+F+
Sbjct: 177 AKLMNAEALRLGMTHTHFVNPTGLPDPAHKSSARDLAILARAIIHDSVDYYPIYAEREFK 236

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           Y      N N LL     +DG+KTG+T ++G+ +VTS +     ++ V++   ++Q R  
Sbjct: 237 YNGIKQGNRNALLYTDPTVDGLKTGHTEDAGYCLVTSSKRNGMRLITVILNTHSAQARAD 296

Query: 279 KALELIT---SFLEKKT 292
           +   L+    S  EK T
Sbjct: 297 ETRTLLGWGFSSFEKAT 313


>gi|330820568|ref|YP_004349430.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia gladioli
           BSR3]
 gi|327372563|gb|AEA63918.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia gladioli
           BSR3]
          Length = 306

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 125/245 (51%), Gaps = 13/245 (5%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +   S +HA    + +V+D    ++ G    D  R PASLTK+MT Y++ + L+   L L
Sbjct: 35  VGADSAIHAA---AWLVVDGESGRVLGEHDADAERQPASLTKLMTAYVVLDALRRGALRL 91

Query: 101 NTQIPVSKTAAT---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           +  + V         Q+ +++YL      T E  +  LI  SAND +      + GS   
Sbjct: 92  DETLRVDGADLADLGQDEARMYLVAGRSVTVEDLVDGLIVASANDAAMVLARRVGGSRAG 151

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   M++ A+++GM +T Y   SG+      +TARD A L   L  +FP YY+Y + ++F
Sbjct: 152 FEQRMNDTARRLGMTHTHYTTPSGITTPGNHSTARDLATLARRLTADFPVYYRYSARQQF 211

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV-TSLRYKDDP-----IVAVVMGMP 271
            Y      N N LL     +DG+KTG+T+ +G+ IV T+ R +  P     + AVV+G P
Sbjct: 212 AYGGFHKRNKNWLLGSAPGVDGLKTGHTQAAGYCIVATARRRQAAPPMARRVFAVVLGAP 271

Query: 272 TSQER 276
           ++  R
Sbjct: 272 SASAR 276


>gi|229186322|ref|ZP_04313487.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus BGSC 6E1]
 gi|228597116|gb|EEK54771.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus BGSC 6E1]
          Length = 396

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 137/242 (56%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 41  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 100

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 101 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 160

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 161 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMKYPLIRKYTGKYEDY--LREDTDKKF 218

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +
Sbjct: 219 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTK 278

Query: 283 LI 284
           L+
Sbjct: 279 LL 280


>gi|238893899|ref|YP_002918633.1| D-alanyl-D-alanine carboxypeptidase fraction C [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238546215|dbj|BAH62566.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 428

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 148/287 (51%), Gaps = 11/287 (3%)

Query: 10  AKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQ- 65
            K T++       +  R +     +LFL    +  A +L   P  ++   I++D    + 
Sbjct: 21  GKDTWVALMMHDAFSLRGLAAGCALLFLVAPAVQAAEQLPDAPSINARAWILMDYASGKV 80

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLY 119
           ++    DE   PASLTK+MT Y++ + +++ K+ L   + V + A AT NP     S ++
Sbjct: 81  LSEGNADEKLDPASLTKIMTSYVVGQAIKAGKIKLTDMVTVGRDAWATGNPALRGSSVMF 140

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           LK     + E     +I +S ND S A  ++++GS+  F  LM+  AKK+G+ NT +   
Sbjct: 141 LKPGMQVSVEDLNKGVIIQSGNDASIAIADYVAGSQDAFVSLMNGYAKKMGLTNTTFMTV 200

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NID 238
            GL    Q +TARD A+L   +  + P+ Y     ++F +      N N+LL   + N D
Sbjct: 201 HGLDAPGQFSTARDMALLTKAMIHDVPEEYAVHKEKEFTFNKIRQPNRNRLLWSSNLNAD 260

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           G+KTG T  +G+N+V+S    D  ++AVV+G  T + R  ++ +L+T
Sbjct: 261 GVKTGTTAGAGYNLVSSATQGDMRLIAVVLGTKTDRIRFNESEKLLT 307


>gi|65321470|ref|ZP_00394429.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A2012]
 gi|118479279|ref|YP_896430.1| D-alanyl-D-alanine carboxypeptidase DacF [Bacillus thuringiensis
           str. Al Hakam]
 gi|118418504|gb|ABK86923.1| D-Ala-D-Ala carboxypeptidase DacF, Serine peptidase, MEROPS family
           S11 [Bacillus thuringiensis str. Al Hakam]
          Length = 398

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 137/242 (56%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 43  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 102

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 103 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 162

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 163 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMKYPLIRKYTGKYEDY--LREDTDKKF 220

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +
Sbjct: 221 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTK 280

Query: 283 LI 284
           L+
Sbjct: 281 LL 282


>gi|47568129|ref|ZP_00238833.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
 gi|47555119|gb|EAL13466.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
          Length = 396

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 137/242 (56%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 41  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 100

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 101 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 160

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 161 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMKYPLIRKYTGKYEDY--LREDTDKKF 218

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +
Sbjct: 219 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTK 278

Query: 283 LI 284
           L+
Sbjct: 279 LL 280


>gi|167828274|ref|ZP_02459745.1| family S11 unassigned peptidase [Burkholderia pseudomallei 9]
          Length = 266

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 131/242 (54%), Gaps = 18/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK---TA 110
           S +V+D +  +  G    D  R PASLTK+MT Y+ F+ L+   L  +  + V+     +
Sbjct: 3   SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERAALRWDDTVTVAADDIAS 62

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             ++ +++YL           +  LI  SAND +    + I GS   FA +M++ A+++G
Sbjct: 63  VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 122

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ + + SG+   +  +TA D +IL   L ++FP +Y + S R F Y     TN N+L
Sbjct: 123 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 182

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSL---------RYKDDPIVAVVMGMPTSQER--DQK 279
           L    ++DG+KTG+T  +G+ +V +          R++   ++AV++G PT ++R  D +
Sbjct: 183 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHR---VIAVLLGEPTEKQRLADAR 239

Query: 280 AL 281
           AL
Sbjct: 240 AL 241


>gi|42783191|ref|NP_980438.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987]
 gi|229174752|ref|ZP_04302276.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus MM3]
 gi|42739119|gb|AAS43046.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987]
 gi|228608742|gb|EEK66040.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus MM3]
          Length = 396

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 137/242 (56%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 41  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 100

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 101 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 160

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 161 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMKYPLIRKYTGKYEDY--LREDTDKKF 218

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +
Sbjct: 219 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTK 278

Query: 283 LI 284
           L+
Sbjct: 279 LL 280


>gi|228941227|ref|ZP_04103780.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228974159|ref|ZP_04134729.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228980751|ref|ZP_04141056.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis Bt407]
 gi|228778920|gb|EEM27182.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis Bt407]
 gi|228785499|gb|EEM33508.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228818386|gb|EEM64458.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|326941850|gb|AEA17746.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 396

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 137/242 (56%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 41  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 100

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 101 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 160

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 161 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMKYPLIRKYTGKYEDY--LREDTDKKF 218

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +
Sbjct: 219 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTK 278

Query: 283 LI 284
           L+
Sbjct: 279 LL 280


>gi|30264153|ref|NP_846530.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Ames]
 gi|47529591|ref|YP_020940.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186984|ref|YP_030236.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
           Sterne]
 gi|49478519|ref|YP_038135.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141418|ref|YP_085412.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
 gi|165871194|ref|ZP_02215844.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0488]
 gi|167633524|ref|ZP_02391848.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0442]
 gi|167639446|ref|ZP_02397717.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0193]
 gi|170687106|ref|ZP_02878324.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0465]
 gi|170705633|ref|ZP_02896096.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0389]
 gi|177652667|ref|ZP_02935083.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0174]
 gi|190566126|ref|ZP_03019045.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           Tsiankovskii-I]
 gi|196034968|ref|ZP_03102375.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus W]
 gi|196038612|ref|ZP_03105920.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           NVH0597-99]
 gi|196045795|ref|ZP_03113024.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           03BB108]
 gi|218905213|ref|YP_002453047.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           AH820]
 gi|225866062|ref|YP_002751440.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           03BB102]
 gi|227816855|ref|YP_002816864.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. CDC 684]
 gi|228916716|ref|ZP_04080281.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|229602274|ref|YP_002868377.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0248]
 gi|254683845|ref|ZP_05147705.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721680|ref|ZP_05183469.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A1055]
 gi|254736192|ref|ZP_05193898.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
           Western North America USA6153]
 gi|254744081|ref|ZP_05201764.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Kruger
           B]
 gi|254754139|ref|ZP_05206174.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
           Vollum]
 gi|254758171|ref|ZP_05210198.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
           Australia 94]
 gi|301055572|ref|YP_003793783.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis CI]
 gi|30258798|gb|AAP28016.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. Ames]
 gi|47504739|gb|AAT33415.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49180911|gb|AAT56287.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
           Sterne]
 gi|49330075|gb|AAT60721.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51974887|gb|AAU16437.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
 gi|164713113|gb|EDR18640.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0488]
 gi|167512505|gb|EDR87880.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0193]
 gi|167530930|gb|EDR93617.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0442]
 gi|170129173|gb|EDS98037.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0389]
 gi|170668723|gb|EDT19468.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0465]
 gi|172082002|gb|EDT67070.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0174]
 gi|190563045|gb|EDV17011.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           Tsiankovskii-I]
 gi|195992507|gb|EDX56468.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus W]
 gi|196023235|gb|EDX61913.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           03BB108]
 gi|196030335|gb|EDX68934.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           NVH0597-99]
 gi|218534801|gb|ACK87199.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           AH820]
 gi|225785916|gb|ACO26133.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           03BB102]
 gi|227005442|gb|ACP15185.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. CDC 684]
 gi|228842903|gb|EEM87986.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|229266682|gb|ACQ48319.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0248]
 gi|300377741|gb|ADK06645.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 396

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 137/242 (56%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 41  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 100

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 101 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 160

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 161 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMKYPLIRKYTGKYEDY--LREDTDKKF 218

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +
Sbjct: 219 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTK 278

Query: 283 LI 284
           L+
Sbjct: 279 LL 280


>gi|217961569|ref|YP_002340139.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           AH187]
 gi|222097526|ref|YP_002531583.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1]
 gi|217065681|gb|ACJ79931.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           AH187]
 gi|221241584|gb|ACM14294.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1]
          Length = 396

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 137/242 (56%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 41  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 100

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 101 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 160

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 161 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMKYPLIRKYTGKYEDY--LREDTDKKF 218

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +
Sbjct: 219 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTK 278

Query: 283 LI 284
           L+
Sbjct: 279 LL 280


>gi|218230756|ref|YP_002368880.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           B4264]
 gi|218158713|gb|ACK58705.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           B4264]
          Length = 396

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 137/242 (56%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 41  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 100

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 101 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 160

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 161 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMKYPLIRKYTGKYEDY--LREDTDKKF 218

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +
Sbjct: 219 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTK 278

Query: 283 LI 284
           L+
Sbjct: 279 LL 280


>gi|167582899|ref|ZP_02375773.1| family S11 unassigned peptidase [Burkholderia thailandensis TXDOH]
          Length = 333

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 130/242 (53%), Gaps = 18/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK---TA 110
           S +V+D +  +  G    D  R PASLTK+MT Y+ F+ L+   L  +  + V+     +
Sbjct: 58  SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERAALRWDETVTVAADDIAS 117

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             ++ +++YL           +  LI  SAND +    + I GS   FA LM++ A+++G
Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATLMNDTARRLG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ + + SG+   +  +TA D +IL   L ++FP +Y + S R F Y     TN N+L
Sbjct: 178 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFSKTNKNRL 237

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI---------VAVVMGMPTSQER--DQK 279
           L    ++DG+KTG+T  +G+ +V + +    PI         +AV++G PT ++R  D +
Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKR---PIGGARAPHRVIAVLLGEPTEKQRLADAR 294

Query: 280 AL 281
           AL
Sbjct: 295 AL 296


>gi|229146650|ref|ZP_04275017.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus BDRD-ST24]
 gi|228636820|gb|EEK93283.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus BDRD-ST24]
          Length = 396

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 137/242 (56%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 41  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 100

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 101 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 160

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 161 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMKYPLIRKYTGKYEDY--LREDTDKKF 218

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +
Sbjct: 219 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTK 278

Query: 283 LI 284
           L+
Sbjct: 279 LL 280


>gi|206971113|ref|ZP_03232064.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           AH1134]
 gi|228960342|ref|ZP_04121995.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229129356|ref|ZP_04258327.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus BDRD-Cer4]
 gi|229152278|ref|ZP_04280471.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus m1550]
 gi|296504570|ref|YP_003666270.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
 gi|206733885|gb|EDZ51056.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           AH1134]
 gi|228631240|gb|EEK87876.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus m1550]
 gi|228653961|gb|EEL09828.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus BDRD-Cer4]
 gi|228799366|gb|EEM46330.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|296325622|gb|ADH08550.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
          Length = 396

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 137/242 (56%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 41  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 100

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 101 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 160

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 161 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMKYPLIRKYTGKYEDY--LREDTDKKF 218

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +
Sbjct: 219 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTK 278

Query: 283 LI 284
           L+
Sbjct: 279 LL 280


>gi|229198199|ref|ZP_04324908.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus m1293]
 gi|228585359|gb|EEK43468.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus m1293]
          Length = 385

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 137/242 (56%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 30  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 90  HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMKYPLIRKYTGKYEDY--LREDTDKKF 207

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +
Sbjct: 208 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTK 267

Query: 283 LI 284
           L+
Sbjct: 268 LL 269


>gi|229140812|ref|ZP_04269357.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus BDRD-ST26]
 gi|228642602|gb|EEK98888.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus BDRD-ST26]
          Length = 385

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 137/242 (56%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 30  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 90  HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMKYPLIRKYTGKYEDY--LREDTDKKF 207

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +
Sbjct: 208 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTK 267

Query: 283 LI 284
           L+
Sbjct: 268 LL 269


>gi|324327983|gb|ADY23243.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 396

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 137/242 (56%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 41  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 100

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 101 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 160

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 161 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMKYPLIRKYTGKYEDY--LREDTDKKF 218

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +
Sbjct: 219 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTK 278

Query: 283 LI 284
           L+
Sbjct: 279 LL 280


>gi|303241570|ref|ZP_07328070.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio
           cellulolyticus CD2]
 gi|302590888|gb|EFL60636.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio
           cellulolyticus CD2]
          Length = 403

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 137/242 (56%), Gaps = 6/242 (2%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSK 96
           SI+  +  SEL AK   +S+++D    Q+    +   + P AS+TK+M++ +  E + S 
Sbjct: 40  SIMASTSISELKAK---ASVLMDAYTGQVLYENKSNEKLPIASVTKVMSMLLAMEAIDSG 96

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           K+ L   +  S+ A+    S+ Y++    ++    + A+   S+NDV+ +  E ++GSE+
Sbjct: 97  KISLKDMVTASEYASGMGGSQAYIEPGEQYSVHDALKAIALHSSNDVTVSVAELVAGSEE 156

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F + M+ KA ++GM+NT++K+ +GL D+   ++A D A++   L    P+  +Y S+  
Sbjct: 157 AFVVQMNEKAGELGMKNTLFKDCTGLTDEGHFSSANDIALMSRELVTKHPKILEYSSVYT 216

Query: 217 FRYRNR--IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
             +RN    +TN N+L+      DG+KTG+TR +GF +  ++   +  +++VV+G P S 
Sbjct: 217 DTFRNGEFDLTNTNRLVKFYSGCDGLKTGFTRAAGFCLSATVSRNNMRLISVVLGEPDSN 276

Query: 275 ER 276
            R
Sbjct: 277 TR 278


>gi|167037532|ref|YP_001665110.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115947|ref|YP_004186106.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166856366|gb|ABY94774.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929038|gb|ADV79723.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 381

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/261 (32%), Positives = 150/261 (57%), Gaps = 9/261 (3%)

Query: 30  LMGKILFLSIIM--ISMASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMT 85
           L+  IL +S ++     A  L+ K K S+I+++ N  Q+  +++D  +P  PAS+TK+MT
Sbjct: 9   LVSVILAISFVLNGTVYADTLNLKSK-SAILMEANTGQIL-YEKDSHKPLPPASVTKVMT 66

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           L +  E + S K+ +  ++  SK A     +++YL+     T +  + A+   SAND S 
Sbjct: 67  LLLAIEAIDSGKIKITDKVVTSKHAFDMGGTQIYLEVGEEMTVDDLMKAIAMNSANDASV 126

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E+I+G+E+ F  +M+ +AK++G +NT +KNA+GL ++  +T+  D A++   L K+ 
Sbjct: 127 ALAEYIAGTEENFVEMMNKRAKELGAKNTTFKNATGLPEEGHLTSVYDIAMISRELVKH- 185

Query: 206 PQYYKYFSIRKFRYRNR--IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
              +KY + +    RN    + N NKLL +   +DGIKTG T  + + +  + +  D  +
Sbjct: 186 ESIFKYLTNKLDSLRNGKFSLINTNKLLWRYKGVDGIKTGSTSEALYCMAATAKRGDTRL 245

Query: 264 VAVVMGMPTSQERDQKALELI 284
           +AVV G P S+ R  +A +L+
Sbjct: 246 IAVVFGAPDSETRFSEAAKLL 266


>gi|229031719|ref|ZP_04187712.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH1271]
 gi|229071580|ref|ZP_04204798.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus F65185]
 gi|229081333|ref|ZP_04213836.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock4-2]
 gi|229180356|ref|ZP_04307699.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus 172560W]
 gi|228603103|gb|EEK60581.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus 172560W]
 gi|228701955|gb|EEL54438.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock4-2]
 gi|228711516|gb|EEL63473.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus F65185]
 gi|228729603|gb|EEL80590.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH1271]
          Length = 385

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 137/242 (56%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 30  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 90  HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMKYPLIRKYTGKYEDY--LREDTDKKF 207

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +
Sbjct: 208 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTK 267

Query: 283 LI 284
           L+
Sbjct: 268 LL 269


>gi|228929125|ref|ZP_04092152.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228935397|ref|ZP_04098215.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228947796|ref|ZP_04110083.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229123599|ref|ZP_04252794.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus 95/8201]
 gi|229157660|ref|ZP_04285735.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus ATCC 4342]
 gi|228625617|gb|EEK82369.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus ATCC 4342]
 gi|228659734|gb|EEL15379.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus 95/8201]
 gi|228811783|gb|EEM58117.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228824149|gb|EEM69963.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228830415|gb|EEM76025.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 385

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 137/242 (56%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 30  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 90  HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMKYPLIRKYTGKYEDY--LREDTDKKF 207

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +
Sbjct: 208 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTK 267

Query: 283 LI 284
           L+
Sbjct: 268 LL 269


>gi|28897493|ref|NP_797098.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260876429|ref|ZP_05888784.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus AN-5034]
 gi|28805705|dbj|BAC58982.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308091621|gb|EFO41316.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus AN-5034]
 gi|328472498|gb|EGF43361.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus 10329]
          Length = 392

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 138/255 (54%), Gaps = 8/255 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
           F S +++  A ++ AK     +++D +  ++   K+   +  PASLTKMMT Y+I + L 
Sbjct: 26  FASPVVVPDAPQIAAK---GYVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELA 82

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              +  +  + +SK A  +N    SK++++  T          +I +S ND   A  E I
Sbjct: 83  RGNISEDDDVTISKNAWAKNFPDSSKMFIEVGTTVKVRDLNRGIIIQSGNDACVAMAEHI 142

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  F  LM+  A  +GM+N+ + N  GL +    +T  D A+LG  L ++ P  Y+ 
Sbjct: 143 AGSEDAFVDLMNAWANTLGMKNSHFANVHGLDNSELYSTPYDMALLGKALIRDVPDEYRV 202

Query: 212 FSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL +K  N+DGIKTG+T N+G+++V+S       +VAVVMG 
Sbjct: 203 YSEKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGQMRLVAVVMGT 262

Query: 271 PTSQERDQKALELIT 285
             +  R  ++ +L++
Sbjct: 263 KDANARKSESKKLLS 277


>gi|317128503|ref|YP_004094785.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cellulosilyticus
           DSM 2522]
 gi|315473451|gb|ADU30054.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cellulosilyticus
           DSM 2522]
          Length = 387

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 146/265 (55%), Gaps = 15/265 (5%)

Query: 34  ILFLSIIMISMASELHAKPKY--------SSIVIDVNKNQMTGFKQD-EPRYPASLTKMM 84
           +L L + M S A    A+           S+I+I+ +  Q+   K   E   PAS+TK+M
Sbjct: 7   VLLLGLYMFSSAGSALAEESTVDLADDATSAILIERDTGQVLYEKNSGEKLPPASMTKVM 66

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T+ +I E + S K+  + ++  S+ AA+   S+++L+     T E+ +  +   S ND S
Sbjct: 67  TMLLIMEAIDSGKITWDEKVRTSERAASMGGSQIFLEPGEEMTVEEMMKGIAIASGNDAS 126

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  E ++GSE++F  +M++KAKK+G++NT + N++GL  +N  ++A D A++   L K 
Sbjct: 127 VAMAEHLAGSEEQFVQMMNDKAKKLGLKNTHFVNSNGLPAENHYSSAEDLALMAKALLK- 185

Query: 205 FPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           + +  KY S+ +   R        + N NKL+     +DG+KTG+T  + + +  S    
Sbjct: 186 YEEITKYTSLYEDYLRQDTDDEFWLVNTNKLVKFYPGVDGLKTGFTNEAKYCLTASANKN 245

Query: 260 DDPIVAVVMGMPTSQERDQKALELI 284
              I+AVVMG PT ++R+++  E++
Sbjct: 246 GMRIIAVVMGAPTPKDRNRQVTEML 270


>gi|30022162|ref|NP_833793.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
 gi|29897719|gb|AAP10994.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
          Length = 396

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 137/242 (56%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 41  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 100

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 101 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 160

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 161 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMKYPLIRKYTGKYEDY--LREDTDKKF 218

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +
Sbjct: 219 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTK 278

Query: 283 LI 284
           L+
Sbjct: 279 LL 280


>gi|89099052|ref|ZP_01171931.1| DacF [Bacillus sp. NRRL B-14911]
 gi|89086182|gb|EAR65304.1| DacF [Bacillus sp. NRRL B-14911]
          Length = 371

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 136/242 (56%), Gaps = 9/242 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +I E +   KL ++ +I  S+ AA+   S+++L+     TTEQ +  + 
Sbjct: 44  PASMTKIMTMLLIMEAIDKGKLSMDEKIRASEYAASMGGSQIFLEPGEEMTTEQMLKGIA 103

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND S A  E ++GSE++F  LM+ KAK +G+++TI+KNA+GL      +TA D A+
Sbjct: 104 IGSGNDASVAMAERLAGSEEEFVKLMNKKAKDLGLKDTIFKNATGLPVTEHYSTAHDMAL 163

Query: 197 LGILLRK-----NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +   L K      F   Y+ + +R+   +   + N N+L+     +DG+KTG+T  + + 
Sbjct: 164 MAKELLKYEGITKFTGTYEAY-LREDTDKKFWLVNTNRLVRFYPGVDGLKTGFTNEAKYC 222

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT-SFLEKKTLKHQQTHRKDNLSSTSLK 310
           +  +       ++AVV G PTS+ER+ +  +++  +F + +T  H    R + L S  + 
Sbjct: 223 LTATAEKNGMRVIAVVFGAPTSKERNAQVTKMLDYAFSQYET--HPMYKRNEALGSAKVS 280

Query: 311 KS 312
           K 
Sbjct: 281 KG 282


>gi|228987267|ref|ZP_04147388.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228772496|gb|EEM20941.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 385

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 137/242 (56%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 30  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 90  HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMKYPLIRKYTGKYEDY--LREDTDKKF 207

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +
Sbjct: 208 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTK 267

Query: 283 LI 284
           L+
Sbjct: 268 LL 269


>gi|229093134|ref|ZP_04224256.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock3-42]
 gi|228690283|gb|EEL44076.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock3-42]
          Length = 385

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 137/242 (56%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 30  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 90  HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMKYPLIRKYTGKYEDY--LREDTDKKF 207

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +
Sbjct: 208 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTK 267

Query: 283 LI 284
           L+
Sbjct: 268 LL 269


>gi|229163014|ref|ZP_04290970.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus R309803]
 gi|228620420|gb|EEK77290.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus R309803]
          Length = 385

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 137/242 (56%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 30  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 90  HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMKYPLIRKYTGKYEDY--LREDTDKKF 207

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +
Sbjct: 208 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTK 267

Query: 283 LI 284
           L+
Sbjct: 268 LL 269


>gi|229061749|ref|ZP_04199082.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH603]
 gi|229168820|ref|ZP_04296539.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH621]
 gi|228614668|gb|EEK71774.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH621]
 gi|228717495|gb|EEL69159.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH603]
          Length = 385

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 137/242 (56%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 30  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 90  HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMKYPLIRKYTGKYEDY--LREDTDKKF 207

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +
Sbjct: 208 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTK 267

Query: 283 LI 284
           L+
Sbjct: 268 LL 269


>gi|206576649|ref|YP_002239512.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae
           342]
 gi|290510585|ref|ZP_06549955.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55]
 gi|206565707|gb|ACI07483.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae
           342]
 gi|289777301|gb|EFD85299.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55]
          Length = 400

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 85/271 (31%), Positives = 142/271 (52%), Gaps = 11/271 (4%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLT 81
           R +     +LFL    +  A +L   P   +   I++D    + ++    DE   PASLT
Sbjct: 9   RGLAAGCALLFLVAPAVQAAEQLPDAPSIDARAWILMDYASGKVLSEGNADEKLDPASLT 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILAL 135
           K+MT Y++ + +++ K+ L   + V + A AT NP     S ++LK     + E     +
Sbjct: 69  KIMTSYVVGQAIKAGKIKLTDMVTVGRDAWATGNPALRGSSVMFLKPGMQVSVEDLNKGV 128

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I +S ND S A  ++++GS+  F  LM+  AKK+G+ NT +    GL    Q +TARD A
Sbjct: 129 IIQSGNDASIAIADYVAGSQDAFVSLMNGYAKKMGLTNTTFMTVHGLDAPGQFSTARDMA 188

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVT 254
           +L   +  + P+ Y     ++F +      N N+LL   + N DG+KTG T  +G+N+V+
Sbjct: 189 LLTKAMIHDVPEEYAVHKEKEFTFNKIRQPNRNRLLWSTNLNADGVKTGTTAGAGYNLVS 248

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           S    D  ++AVV+G  T + R  ++ +L+T
Sbjct: 249 SATQGDMRLIAVVLGTKTDRIRFNESEKLLT 279


>gi|261825019|pdb|3IT9|A Chain A, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
           From E. Coli In Apo State
 gi|261825020|pdb|3IT9|B Chain B, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
           From E. Coli In Apo State
 gi|261825021|pdb|3IT9|C Chain C, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
           From E. Coli In Apo State
 gi|261825022|pdb|3IT9|D Chain D, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
           From E. Coli In Apo State
 gi|261825023|pdb|3ITA|A Chain A, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
           From E. Coli In Acyl-Enzyme Complex With Ampicillin
 gi|261825024|pdb|3ITA|B Chain B, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
           From E. Coli In Acyl-Enzyme Complex With Ampicillin
 gi|261825025|pdb|3ITA|C Chain C, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
           From E. Coli In Acyl-Enzyme Complex With Ampicillin
 gi|261825026|pdb|3ITA|D Chain D, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
           From E. Coli In Acyl-Enzyme Complex With Ampicillin
 gi|261825027|pdb|3ITB|A Chain A, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
           From E. Coli In Complex With A Substrate Fragment
 gi|261825028|pdb|3ITB|B Chain B, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
           From E. Coli In Complex With A Substrate Fragment
 gi|261825029|pdb|3ITB|C Chain C, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
           From E. Coli In Complex With A Substrate Fragment
 gi|261825030|pdb|3ITB|D Chain D, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
           From E. Coli In Complex With A Substrate Fragment
          Length = 352

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 33  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 92

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 93  VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 152

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 153 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 207

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 208 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 253


>gi|71279808|ref|YP_268450.1| D-alanyl-D-alanine carboxypeptidase [Colwellia psychrerythraea 34H]
 gi|71145548|gb|AAZ26021.1| D-alanyl-D-alanine carboxypeptidase [Colwellia psychrerythraea 34H]
          Length = 399

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/250 (35%), Positives = 140/250 (56%), Gaps = 16/250 (6%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSK 96
           +I +I  A +++AK     I+ID    ++   +  D    PASLTK+MT YII + L++ 
Sbjct: 37  AITIIPDAPQINAK---GFILIDYTTGKIIAEENADTQLAPASLTKIMTSYIIGKELENG 93

Query: 97  KLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTE---QGILALITRSANDVSTAFGEF 150
            +    ++ +S+ A  +   + SK++++  T        QGI   I  S ND   A  E 
Sbjct: 94  NIKNTDKVMISEKAWAKKFPDSSKMFIEVGTEVPVSLLNQGI---IVASGNDACVAMAEH 150

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           I+GSE  FA LM+  A+++GM ++ ++N+ GL   + +TT RD A L I L +  P+ Y 
Sbjct: 151 IAGSESAFADLMNAHAEQLGMSSSFFENSHGLDSTSHMTTPRDMATLAIALIREVPEEYA 210

Query: 211 YFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            +  + F Y N    N N LL +K  N+DG+KTG+T N+G+++VTS    D  +V VVMG
Sbjct: 211 IYKQKSFTYNNIKQYNRNGLLWDKSLNVDGMKTGHTSNAGYSLVTSATKGDMRLVTVVMG 270

Query: 270 MPTSQERDQK 279
             T+ ER +K
Sbjct: 271 --TASERARK 278


>gi|229047768|ref|ZP_04193348.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH676]
 gi|228723560|gb|EEL74925.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH676]
          Length = 377

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 135/237 (56%), Gaps = 9/237 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+ AA+ 
Sbjct: 27  SAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEEVEKGKLKLTDKVRASEHAASM 86

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK +G++N
Sbjct: 87  GGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKN 146

Query: 174 TIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           T ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +   + N 
Sbjct: 147 THFQNPTGLPAKDHYSTANDMAIMARELMKYPLIRKYTGKYEDY--LREDTDKKFWLVNT 204

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +L+
Sbjct: 205 NKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLL 261


>gi|262041066|ref|ZP_06014285.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259041624|gb|EEW42676.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 400

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/276 (32%), Positives = 144/276 (52%), Gaps = 21/276 (7%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLT 81
           R +     +LFL    +  A +L   P   +   I++D    + ++    DE   PASLT
Sbjct: 9   RGLAAGCALLFLVAPAVQAAEQLPDAPSIDARAWILMDYASGKVLSEGNADEKLDPASLT 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILAL 135
           K+MT Y++ + +++ K+ L   + V + A AT NP     S ++LK     + E     +
Sbjct: 69  KIMTSYVVGQAIKAGKIKLTDMVTVGRDAWATGNPALRGSSVMFLKPGMQVSVEDLNKGV 128

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I +S ND S A  ++++GS+  F  LM+  AKK+G+ NT +    GL    Q +TARD A
Sbjct: 129 IIQSGNDASIAIADYVAGSQDAFVSLMNGYAKKMGLTNTTFMTVHGLDAPGQFSTARDMA 188

Query: 196 ILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSG 249
           +L   +  + P+ Y     K F+  K R  NR     N+LL   + N DG+KTG T  +G
Sbjct: 189 LLTKAMIHDVPEEYAVHKEKEFTFNKIRQPNR-----NRLLWSSNLNADGVKTGTTAGAG 243

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +N+V+S    D  ++AVV+G  T + R  ++ +L+T
Sbjct: 244 YNLVSSATQGDMRLIAVVLGTKTDRIRFNESEKLLT 279


>gi|126739769|ref|ZP_01755460.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. SK209-2-6]
 gi|126719001|gb|EBA15712.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. SK209-2-6]
          Length = 388

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 110/204 (53%), Gaps = 5/204 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D+P  PAS++K+MTLYI FE LQ  +L L+ ++PVS  A +   S ++L        E  
Sbjct: 48  DQPLPPASMSKLMTLYIAFEALQDGRLTLSEKLPVSAHAMSYGGSTMFLDTTDRVGVEDL 107

Query: 132 ILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           +  +I  S ND      E +S  G+E  FA  M+ +A+++GM N  + N++G        
Sbjct: 108 LRGIIVLSGNDACAVIAEALSPDGTEAGFARYMTRRAQELGMVNATFANSNGWPAAGHRM 167

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT---NHNKLLNKMHNIDGIKTGYTR 246
           + RD  IL   L ++FPQYY  FS ++F +  R  +   N N LL      DG+KTG+T 
Sbjct: 168 SMRDLGILAERLIEDFPQYYPLFSEKEFAFDGRAPSNTRNRNPLLGLGIGADGLKTGHTS 227

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGM 270
            +G+ +V S    +  ++ V+ G+
Sbjct: 228 EAGYGLVGSAVQGERRVIFVITGL 251


>gi|320015830|gb|ADV99401.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 401

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 139/251 (55%), Gaps = 15/251 (5%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A ++ AK   + +++D N  ++      + R  PASLTK+M+ Y+I + +++ K+  +  
Sbjct: 35  APQIDAK---AYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDL 91

Query: 104 IPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           + V K A AT NP     S ++LK             ++ +S ND S A  ++++GS+  
Sbjct: 92  VTVGKDAWATGNPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQDS 151

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F  LM+N AK +G+ NT +    GL    Q +TARD A+LG  L ++ P+ Y     ++F
Sbjct: 152 FVGLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEF 211

Query: 218 RYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP--IVAVVMGMPTSQ 274
            +     TN N+LL N   N+DG+KTGYT   G+N+V S    D P  +++VV+G P+ +
Sbjct: 212 TFNKIRQTNRNRLLWNSSLNVDGMKTGYTNGVGYNLVASA--TDGPMRLISVVLGAPSDK 269

Query: 275 ERDQKALELIT 285
            R  ++ +L+T
Sbjct: 270 VRFSESEKLLT 280


>gi|326391736|ref|ZP_08213259.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992236|gb|EGD50705.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 381

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 86/261 (32%), Positives = 149/261 (57%), Gaps = 9/261 (3%)

Query: 30  LMGKILFLSIIM--ISMASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMT 85
           L+  IL +S ++     A  L+ K K S+I+I+ N  Q+  +++D  +P  PAS+TK+MT
Sbjct: 9   LVSVILAISFVLNGTVYADTLNLKSK-SAILIEANTGQIL-YEKDSHKPLPPASVTKVMT 66

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           L +  E + S K+ +  ++  SK A     +++YL+     T +  + A+   SAND S 
Sbjct: 67  LLLAIEAIDSGKIKITDKVVTSKHAFDMGGTQIYLEVGEEMTVDDLMKAIAMNSANDASV 126

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E+I+G+E+ F  +M+ +AK++G +NT +KNA+GL ++  +T+  D A++   L K+ 
Sbjct: 127 ALAEYIAGTEENFVEMMNKRAKELGAKNTTFKNATGLPEEGHLTSVYDIAMISRELVKH- 185

Query: 206 PQYYKYFSIRKFRYRNR--IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
              +KY + +    RN    + N NKLL +    DGIKTG T  + + +  + +  D  +
Sbjct: 186 ESIFKYLTNKLDSLRNGKFSLINTNKLLWRYKGADGIKTGSTSEALYCMAATAKRGDTRL 245

Query: 264 VAVVMGMPTSQERDQKALELI 284
           +AVV G P S+ R  +A +L+
Sbjct: 246 IAVVFGAPDSETRFSEAAKLL 266


>gi|228922828|ref|ZP_04086126.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228836883|gb|EEM82226.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 385

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 138/242 (57%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 30  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 90  HAASMGGSQIFLEPGEEMTLNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D AI+        L+RK   +Y  Y  +R+   +  
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMKYPLIRKYTGKYEDY--LREDTDKKF 207

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S +     +++VVMG PTS+ER+ +  +
Sbjct: 208 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAQKNGMRVISVVMGAPTSKERNNQVTK 267

Query: 283 LI 284
           L+
Sbjct: 268 LL 269


>gi|113460464|ref|YP_718526.1| penicillin-binding protein [Haemophilus somnus 129PT]
 gi|112822507|gb|ABI24596.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Haemophilus somnus 129PT]
          Length = 388

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 146/263 (55%), Gaps = 14/263 (5%)

Query: 50  AKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           A P+ S+   I++D +    +  F  D+ ++PASLTKMMT Y++ + ++  K+ L   + 
Sbjct: 27  ASPELSAQSYILMDYHSGAVLAAFNPDQRQHPASLTKMMTSYVVGDAIKQGKISLTDTVT 86

Query: 106 VSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           + ++A  +N    SK++L      +       ++  S ND   A  E I+GSE+ F  LM
Sbjct: 87  IDESAWGKNFPGSSKMFLNLNQQVSVADLNRGIVIVSGNDACVAIAEHIAGSERNFIELM 146

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
           +    K G++NT +    GL D NQ ++ARD AI+G  +  + P+ YK ++ ++F +   
Sbjct: 147 NKYVAKFGLKNTNFMTVHGLDDDNQYSSARDMAIIGRHIIHDLPEEYKIYAEKEFTFNK- 205

Query: 223 IITNHNK---LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQ 278
            I  HN+   L +K   +DG+KTG+T  +G+N+V S    ++  +++VVMG+ T + R+ 
Sbjct: 206 -IKQHNRNGLLWDKSIKVDGMKTGHTNKAGYNLVASAVNNNNMRLISVVMGVATHKGREI 264

Query: 279 KALELI-TSFLEKKTLKHQQTHR 300
           ++ +L+   F   +T K  Q ++
Sbjct: 265 ESKKLLQWGFANFETFKSLQANQ 287


>gi|294676801|ref|YP_003577416.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacter capsulatus SB
           1003]
 gi|294475621|gb|ADE85009.1| D-alanyl-D-alanine carboxypeptidase-2 [Rhodobacter capsulatus SB
           1003]
          Length = 386

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 111/210 (52%), Gaps = 6/210 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS++K+MTL ++FE L   ++ L+T   VS  A     S ++L E    +  + +  ++
Sbjct: 52  PASMSKLMTLNMLFEALSEGRVTLDTTFAVSTKAKQMGGSTMFLNEMDRPSVRELMQGVV 111

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND      E ++GSE  FA  M+ +AK +GM  + + NASG    +Q  +  D  I
Sbjct: 112 INSGNDACVVVAEGLAGSEGAFAAGMTERAKMLGMTRSTFANASGWPHPDQRMSMHDLGI 171

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITN-HN-----KLLNKMHNIDGIKTGYTRNSGF 250
           L + L   FPQYY  FS  +F Y+NR   N HN     K+     + DG+KTG+T  +G+
Sbjct: 172 LAVRLITQFPQYYPLFSETQFNYKNRAPANAHNRNPLLKIPAADWHADGLKTGHTEEAGY 231

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
            +V S    D  IV V+ G+ +  +R  +A
Sbjct: 232 GLVGSAVMGDRRIVFVISGLASEADRASEA 261


>gi|297544591|ref|YP_003676893.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842366|gb|ADH60882.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 381

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 145/253 (57%), Gaps = 9/253 (3%)

Query: 30  LMGKILFLSIIM--ISMASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMT 85
           L+  I+ +S I+     A  L+ K K S+I+++ N  Q+  +++D  +P  PAS+TK+MT
Sbjct: 9   LVSMIIAISFILDVTVYADTLNLKAK-SAILMEANTGQIL-YEKDSHKPLPPASVTKVMT 66

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           L +  E + S K+ +  ++  SK A     +++YL+     T +  + A+   SAND S 
Sbjct: 67  LLLAIEAIDSGKIKITDKVVTSKHAFDMGGTQIYLEIGEEMTVDDLMKAIAMNSANDASV 126

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E+I+G+E+ F  +M+ +AK++G +NT +KNA+GL D+  +T+  D A++   L K+ 
Sbjct: 127 ALAEYIAGTEENFVEIMNKRAKELGAKNTTFKNATGLPDEGHLTSVYDIAMISRELVKH- 185

Query: 206 PQYYKYFSIRKFRYRNR--IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
              +KY + +    RN    + N NKLL +   +DGIKTG T  + + +  + +  D  +
Sbjct: 186 ESIFKYLTNKLDSLRNGKFSLINTNKLLWRYKGVDGIKTGSTSEALYCMAATAKRADTRL 245

Query: 264 VAVVMGMPTSQER 276
           +AVV G P S+ R
Sbjct: 246 IAVVFGAPDSETR 258


>gi|152969428|ref|YP_001334537.1| D-alanyl-D-alanine carboxypeptidase fraction C [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|330008401|ref|ZP_08306219.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3]
 gi|150954277|gb|ABR76307.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|328535160|gb|EGF61663.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3]
          Length = 400

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/271 (31%), Positives = 142/271 (52%), Gaps = 11/271 (4%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLT 81
           R +     +LFL    +  A +L   P   +   I++D    + ++    DE   PASLT
Sbjct: 9   RGLAAGCALLFLVAPAVQAAEQLPDAPSIDARAWILMDYASGKVLSEGNADEKLDPASLT 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILAL 135
           K+MT Y++ + +++ K+ L   + V + A AT NP     S ++LK     + E     +
Sbjct: 69  KIMTSYVVGQAIKAGKIKLTDMVTVGRDAWATGNPALRGSSVMFLKPGMQVSVEDLNKGV 128

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I +S ND S A  ++++GS+  F  LM+  AKK+G+ NT +    GL    Q +TARD A
Sbjct: 129 IIQSGNDASIAIADYVAGSQDAFVSLMNGYAKKMGLTNTTFMTVHGLDAPGQFSTARDMA 188

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVT 254
           +L   +  + P+ Y     ++F +      N N+LL   + N DG+KTG T  +G+N+V+
Sbjct: 189 LLTKAMIHDVPEEYAVHKEKEFTFNKIRQPNRNRLLWSSNLNADGVKTGTTAGAGYNLVS 248

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           S    D  ++AVV+G  T + R  ++ +L+T
Sbjct: 249 SATQGDMRLIAVVLGTKTDRIRFNESEKLLT 279


>gi|270262090|ref|ZP_06190362.1| D-alanyl-D-alanine carboxypeptidase [Serratia odorifera 4Rx13]
 gi|270043966|gb|EFA17058.1| D-alanyl-D-alanine carboxypeptidase [Serratia odorifera 4Rx13]
          Length = 389

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 122/231 (52%), Gaps = 7/231 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-NP-----SKLYLKEKTY 125
           DE R PASLTK+MT  +I   L   K+ L+  + V K A  Q NP     S ++LK    
Sbjct: 57  DERRNPASLTKLMTGLVIDHALDQHKIGLDDVVTVGKDAWAQGNPVFKGSSLMFLKPGDR 116

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            T       +I  S ND   A  ++++GS+  F  LM+ K+ ++G+QNT ++   GL   
Sbjct: 117 VTVRDLSRGIIIDSGNDACVAMADYVAGSQAAFVKLMNEKSTQLGLQNTHFETVHGLDAP 176

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGY 244
            Q TTA D A++   +  + P  Y  +S +   +      N N LL +K   +DG+KTG+
Sbjct: 177 GQFTTAGDLAVISRAIIMSEPAEYHMYSEKSLSWNGITQQNRNGLLWDKNLRVDGLKTGH 236

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKH 295
           T ++GFNI+ S    D  ++AVVMG  +++ R+ +A +L+T  L      H
Sbjct: 237 TASAGFNIIASATEGDRRLIAVVMGGKSAKGREDQARKLLTWGLRDFATVH 287


>gi|24112205|ref|NP_706715.1| putative D-alanyl-D-alanine carboxypeptidase, fraction A;
           penicillin-binding protein 5 [Shigella flexneri 2a str.
           301]
 gi|24051049|gb|AAN42422.1| putative D-alanyl-D-alanine carboxypeptidase, fraction A;
           penicillin-binding protein 5 [Shigella flexneri 2a str.
           301]
          Length = 338

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 66  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 125

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 126 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 185

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 186 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 240

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 241 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 286


>gi|313650258|gb|EFS14670.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri 2a str.
           2457T]
 gi|332759746|gb|EGJ90049.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri
           4343-70]
 gi|332760581|gb|EGJ90870.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri
           2747-71]
 gi|332763049|gb|EGJ93294.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-671]
 gi|332768006|gb|EGJ98192.1| penicillin-binding protein 6 [Shigella flexneri 2930-71]
 gi|333007039|gb|EGK26534.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-218]
 gi|333020974|gb|EGK40232.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-304]
          Length = 321

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 59  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 119 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 178

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 179 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 233

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 234 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279


>gi|332532441|ref|ZP_08408319.1| D-alanyl-D-alanine carboxypeptidase [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038084|gb|EGI74531.1| D-alanyl-D-alanine carboxypeptidase [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 387

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/207 (37%), Positives = 116/207 (56%), Gaps = 6/207 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I   +++  +     + VS+ A  +N    SK++++     + ++   
Sbjct: 62  PASLTKMMTSYVIGTEIKAGNIATTDMVTVSEKAWAKNFPESSKMFIEVGKQISVDELNH 121

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E I+GSE  FA LM+  A K+GM N+ + N+ GL      TT RD
Sbjct: 122 GIIIQSGNDACVAMAEHIAGSESAFADLMNAHAAKLGMSNSHFINSHGLDTDEHFTTPRD 181

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A LG  L ++ P  Y  +  + F Y      N N LL ++  ++DGIKTG+T  +G+++
Sbjct: 182 MATLGAALIRDVPDEYALYKQKSFTYNGIKQYNRNSLLWDESLDVDGIKTGHTSEAGYSL 241

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQK 279
           VTS    D  ++AVVMG  TS ER +K
Sbjct: 242 VTSATKNDMRLIAVVMG--TSSERARK 266


>gi|303247169|ref|ZP_07333443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio
           fructosovorans JJ]
 gi|302491328|gb|EFL51216.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio
           fructosovorans JJ]
          Length = 366

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 141/270 (52%), Gaps = 13/270 (4%)

Query: 31  MGKILFLSIIMI------SMASELHAKPKYS---SIVIDVNKNQMTGFKQDEPR--YPAS 79
           M +I+FL I++       +  ++ H+  K +   ++V D    ++  + QD  R   PAS
Sbjct: 1   MRRIMFLLIVLCLIGPKTAFPAKHHSSGKLAVKAALVADYGTGKIF-YSQDPDRRIAPAS 59

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MT+Y++F+ + S +   + ++ VS+ A     S + L+     T ++ +  +   S
Sbjct: 60  VTKVMTMYLVFDMVASGQASFSDKVKVSRRADATGGSTMNLRAGETVTLDELMRGMAVAS 119

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND + A  E   G    +   M+ KA+++GM  T +K  +GL    Q+TTARD   L +
Sbjct: 120 GNDAAVAVAEHFGGVPA-WVKRMNAKARQLGMTRTTFKTPNGLPAPGQLTTARDLMKLAV 178

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
              +++PQ  +Y S     +   +  N N+LL     +DGIKTG+   SGFNI+ + +  
Sbjct: 179 SYLRHYPQALRYHSTTTINHCGAVHANTNRLLGVCEGMDGIKTGFVNASGFNIIATAKRG 238

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLE 289
              I+AVV+G  +SQ R+++   ++ +  E
Sbjct: 239 KTRIIAVVLGGRSSQVRNRETERILDASFE 268


>gi|90578587|ref|ZP_01234397.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14]
 gi|90439420|gb|EAS64601.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14]
          Length = 391

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 85/265 (32%), Positives = 144/265 (54%), Gaps = 10/265 (3%)

Query: 30  LMGKILFLSIIMISMA--SELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           L+G     ++   S+A  S +   P  S+   +++D N  Q+   K  +E   PASLTK+
Sbjct: 10  LVGVTALCTVSFSSLAAPSVIPDAPTLSAKGYVLMDYNTGQVLVEKNANEKLNPASLTKL 69

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSA 140
           MT Y+  + ++   +  +  + +S+ A  +N    SK++++  +          LI +S 
Sbjct: 70  MTSYVAGQEIKQGNISKDDIVVISRNAWARNFPDSSKMFIEVGSEVPLMDLFRGLIIQSG 129

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND S A  E ++GSE+ F  LM++ AKK+GM +T + N  GL   +  TT  D A+LG  
Sbjct: 130 NDASVALAEHVAGSEQAFVGLMNSWAKKLGMNSTHFANPHGLDHSDLYTTPYDIALLGQA 189

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           L ++ P  Y  +S + F Y N    N N LL +K  N+DG+KTGYT  +G+++ +S    
Sbjct: 190 LIRDLPSIYPLYSEKSFTYNNITQRNRNGLLYDKSMNVDGMKTGYTSGAGYSLTSSATEG 249

Query: 260 DDPIVAVVMGMPTSQERDQKALELI 284
           D  ++AVVMG  +++ R+ ++  L+
Sbjct: 250 DMRLIAVVMGTKSTKTRESESKALL 274


>gi|153001830|ref|YP_001367511.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS185]
 gi|160876563|ref|YP_001555879.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS195]
 gi|151366448|gb|ABS09448.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS185]
 gi|160862085|gb|ABX50619.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS195]
          Length = 391

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/237 (33%), Positives = 137/237 (57%), Gaps = 11/237 (4%)

Query: 57  IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           +++D N  Q+       E   PASLTKMMT Y+I + +++  + ++  + +SK A ++N 
Sbjct: 42  VLMDYNSGQIIAESNAYESLNPASLTKMMTSYVIGQEIKAGNVSVDDDVTISKNAWSKNF 101

Query: 115 --PSKLYLKEKTYFTTEQGIL--ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
              SK++++  T  T + G L   +I +S ND   A  E I+G+E  F  +M++ AK++G
Sbjct: 102 SDSSKMFIEVGT--TVKVGDLNRGIIIQSGNDACVAMAEHIAGTEGAFVDMMNSWAKQLG 159

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ ++NA GL  +N  +TA D A+LG  L ++ P  Y  +S + + +      N N L
Sbjct: 160 MRDSYFENAHGLDAENHKSTAYDMALLGAALIRDVPDEYHIYSEKFYTFNGIKQYNRNGL 219

Query: 231 L--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           L  N M N+DGIKTG+T  +G+N+V S       +++VVMG  +   R  ++ +L+T
Sbjct: 220 LWDNSM-NVDGIKTGHTSGAGYNLVASATKDGMRLISVVMGTQSESARKAESKKLLT 275


>gi|91792211|ref|YP_561862.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella denitrificans
           OS217]
 gi|91714213|gb|ABE54139.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Shewanella denitrificans OS217]
          Length = 428

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 121/208 (58%), Gaps = 6/208 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I   L+   + L  ++ ++K A ++N    SK++++       +    
Sbjct: 100 PASLTKMMTSYVIGHELKVGNISLEDEVTITKNAWSKNFPDSSKMFIEVGKTVKVDDLNR 159

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E I+G+E  F  LM++ +K++GM ++ ++N+ GL  +N  TTA D
Sbjct: 160 GIIIQSGNDACVAMAEHIAGTEGAFVDLMNSWSKQLGMNDSYFENSHGLDSENHKTTAYD 219

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A+LG  L ++ PQ Y+ ++ + F Y      N N LL +   N+DGIKTG+T  +G+N+
Sbjct: 220 MALLGAALIRDVPQEYRVYAEKSFTYNGIKQYNRNGLLWDNSLNVDGIKTGHTSGAGYNL 279

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           V S       +++VV+G  TS E  +KA
Sbjct: 280 VASATSDGMRLISVVLG--TSSESARKA 305


>gi|317048758|ref|YP_004116406.1| beta-lactamase [Pantoea sp. At-9b]
 gi|316950375|gb|ADU69850.1| Beta-lactamase [Pantoea sp. At-9b]
          Length = 389

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 128/239 (53%), Gaps = 10/239 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT 112
           S +++D    Q +T    DE R PASLTK+MT Y++   +   K+  +  + V K A A 
Sbjct: 39  SWVLMDATTGQILTAGNPDEERNPASLTKLMTGYVVDRAIDQHKISRDDVVTVGKDAWAA 98

Query: 113 QNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
            NP     S ++LK     T       +I  S ND   A  ++++GS++ F  +M++  +
Sbjct: 99  GNPVFKGSSLMFLKPGDKVTVRDLSRGVIIDSGNDACVALADYVAGSQQNFVTMMNSYVQ 158

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           K+G+ +T ++   GL    Q TTARD A+L   +    P +Y  +S +   +      N 
Sbjct: 159 KLGLTHTHFETVHGLDAPGQHTTARDLAVLSRAIISGEPDFYAMYSEKTLTWNGITQNNR 218

Query: 228 NKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N LL  N +H +DG+KTG+T  +GFNI+ S       ++AV+MG  +S+ R+++A +L+
Sbjct: 219 NGLLWDNNLH-VDGLKTGHTETAGFNIIASSIVGQHRLIAVIMGGKSSKGREEQARKLL 276


>gi|307265140|ref|ZP_07546699.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306919762|gb|EFN49977.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 381

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 86/261 (32%), Positives = 148/261 (56%), Gaps = 9/261 (3%)

Query: 30  LMGKILFLSIIM--ISMASELHAKPKYSSIVIDVNKNQMTGFKQDE--PRYPASLTKMMT 85
           L+  IL +S ++     A  L+ K K S+I+I+ N  Q+  +++D   P  PAS+TK+MT
Sbjct: 9   LVSVILAISFVLNGTVYADTLNLKSK-SAILIEANTGQIL-YEKDSHNPLPPASVTKVMT 66

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           L +  E + S K+ +  ++  SK A     +++YL+     T +  + A+   SAND S 
Sbjct: 67  LLLAIEAIDSGKIKITDKVVTSKHAFDMGGTQIYLEVGEEMTVDDLMKAIAMNSANDASV 126

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E+I+G+E+ F  +M+ +AK++G +NT +KNA+GL ++  +T+  D A++   L K+ 
Sbjct: 127 ALAEYIAGTEENFVEMMNKRAKELGAKNTTFKNATGLPEEGHLTSVYDIAMISRELVKH- 185

Query: 206 PQYYKYFSIRKFRYRNR--IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
              +KY + +    RN    + N NKLL +    DGIKTG T  + + +  + +  D  +
Sbjct: 186 ESIFKYLTNKLDSLRNGKFSLINTNKLLWRYKGADGIKTGSTSEALYCMAATAKRGDTRL 245

Query: 264 VAVVMGMPTSQERDQKALELI 284
           +AVV G P S+ R  +A +L+
Sbjct: 246 IAVVFGAPDSETRFSEAAKLL 266


>gi|170747925|ref|YP_001754185.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654447|gb|ACB23502.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 429

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 130/235 (55%), Gaps = 6/235 (2%)

Query: 56  SIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---- 110
           +I+ID +   +   K  + R+ PAS+ K+MT  I+FE L+S +L ++T+  V++ A    
Sbjct: 47  AILIDADSGSVLFEKAADERFSPASMAKLMTTDIVFEALKSGRLSMDTEFTVTEDAWKRG 106

Query: 111 -ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            A    S ++ +  +       +  LI +S ND +    E ++GSE+ FA LM+ +AK+I
Sbjct: 107 GAGGGGSSMFAQVNSRIKMADLLRGLIVQSGNDAAITIAENMAGSEEAFAGLMNQRAKEI 166

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+ N+ ++NA+G    +Q  TARD A L + +   +P YYK FS ++F +      N N 
Sbjct: 167 GLTNSTFRNATGYSAPDQKVTARDMAKLALHIIDTYPDYYKIFSEKEFTWNKIRQQNRNP 226

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           LL      DG+KTGY   SG+ +  S       +V VV G+ T+++R  ++ +L+
Sbjct: 227 LLALDIGADGLKTGYLEESGYALTGSAVQNGQRLVLVVSGLKTARDRASESRKLM 281


>gi|304410306|ref|ZP_07391925.1| Beta-lactamase [Shewanella baltica OS183]
 gi|307301983|ref|ZP_07581741.1| Beta-lactamase [Shewanella baltica BA175]
 gi|304351715|gb|EFM16114.1| Beta-lactamase [Shewanella baltica OS183]
 gi|306914021|gb|EFN44442.1| Beta-lactamase [Shewanella baltica BA175]
 gi|315268757|gb|ADT95610.1| Beta-lactamase [Shewanella baltica OS678]
          Length = 425

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/237 (33%), Positives = 137/237 (57%), Gaps = 11/237 (4%)

Query: 57  IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           +++D N  Q+       E   PASLTKMMT Y+I + +++  + ++  + +SK A ++N 
Sbjct: 76  VLMDYNSGQIIAESNAYESLNPASLTKMMTSYVIGQEIKAGNVSVDDDVTISKNAWSKNF 135

Query: 115 --PSKLYLKEKTYFTTEQGIL--ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
              SK++++  T  T + G L   +I +S ND   A  E I+G+E  F  +M++ AK++G
Sbjct: 136 SDSSKMFIEVGT--TVKVGDLNRGIIIQSGNDACVAMAEHIAGTEGAFVDMMNSWAKQLG 193

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ ++NA GL  +N  +TA D A+LG  L ++ P  Y  +S + + +      N N L
Sbjct: 194 MRDSYFENAHGLDAENHKSTAYDMALLGAALIRDVPDEYHIYSEKFYTFNGIKQYNRNGL 253

Query: 231 L--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           L  N M N+DGIKTG+T  +G+N+V S       +++VVMG  +   R  ++ +L+T
Sbjct: 254 LWDNSM-NVDGIKTGHTSGAGYNLVASATKDGMRLISVVMGTQSESARKAESKKLLT 309


>gi|89076565|ref|ZP_01162873.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium sp.
           SKA34]
 gi|89047757|gb|EAR53356.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium sp.
           SKA34]
          Length = 391

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 85/265 (32%), Positives = 144/265 (54%), Gaps = 10/265 (3%)

Query: 30  LMGKILFLSIIMISMA--SELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           L+G     ++   S+A  S +   P  S+   +++D N  Q+   K  +E   PASLTK+
Sbjct: 10  LVGVTALCTVSFSSLAAPSVIPDAPTLSAKGYVLMDYNTGQVLVEKNANEKLNPASLTKL 69

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSA 140
           MT Y+  + ++   +  +  + +S+ A  +N    SK++++  +          LI +S 
Sbjct: 70  MTSYVAGQEIKQGNISKDDIVVISRNAWARNFPDSSKMFIEVGSEVPLMDLFRGLIIQSG 129

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND S A  E ++GSE+ F  LM++ AKK+GM +T + N  GL   +  TT  D A+LG  
Sbjct: 130 NDASVALAEHVAGSEQAFVGLMNSWAKKLGMNSTHFANPHGLDHSDLYTTPYDIALLGQA 189

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           L ++ P  Y  +S + F Y N    N N LL +K  N+DG+KTGYT  +G+++ +S    
Sbjct: 190 LIRDLPSIYPLYSEKSFTYNNITQRNRNGLLYDKSMNVDGMKTGYTSGAGYSLTSSATEG 249

Query: 260 DDPIVAVVMGMPTSQERDQKALELI 284
           D  ++AVVMG  +++ R+ ++  L+
Sbjct: 250 DMRLIAVVMGTKSTKTRESESKALL 274


>gi|218557743|ref|YP_002390656.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           S88]
 gi|218364512|emb|CAR02194.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli S88]
 gi|294493575|gb|ADE92331.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli IHE3034]
 gi|307627752|gb|ADN72056.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           UM146]
          Length = 400

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 59  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 119 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 178

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 179 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 233

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 234 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279


>gi|15800591|ref|NP_286605.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           O157:H7 EDL933]
 gi|15830173|ref|NP_308946.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           O157:H7 str. Sakai]
 gi|110641041|ref|YP_668771.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           536]
 gi|157157612|ref|YP_001462035.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           E24377A]
 gi|195936884|ref|ZP_03082266.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           O157:H7 str. EC4024]
 gi|209918088|ref|YP_002292172.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           SE11]
 gi|215485925|ref|YP_002328356.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218553425|ref|YP_002386338.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           IAI1]
 gi|218688622|ref|YP_002396834.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           ED1a]
 gi|218694313|ref|YP_002401980.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           55989]
 gi|218699214|ref|YP_002406843.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           IAI39]
 gi|218704263|ref|YP_002411782.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           UMN026]
 gi|254792035|ref|YP_003076872.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           O157:H7 str. TW14359]
 gi|260843090|ref|YP_003220868.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O103:H2
           str. 12009]
 gi|260854131|ref|YP_003228022.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O26:H11
           str. 11368]
 gi|260867013|ref|YP_003233415.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O111:H-
           str. 11128]
 gi|261225489|ref|ZP_05939770.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|293433137|ref|ZP_06661565.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           B088]
 gi|306812759|ref|ZP_07446952.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           NC101]
 gi|307314524|ref|ZP_07594127.1| Beta-lactamase [Escherichia coli W]
 gi|312969138|ref|ZP_07783345.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 2362-75]
 gi|12513851|gb|AAG55215.1|AE005265_5 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6
           [Escherichia coli O157:H7 str. EDL933]
 gi|13360378|dbj|BAB34342.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6
           [Escherichia coli O157:H7 str. Sakai]
 gi|110342633|gb|ABG68870.1| penicillin-binding protein 6 precursor [Escherichia coli 536]
 gi|157079642|gb|ABV19350.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E24377A]
 gi|209775538|gb|ACI86081.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6
           [Escherichia coli]
 gi|209775540|gb|ACI86082.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6
           [Escherichia coli]
 gi|209775542|gb|ACI86083.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6
           [Escherichia coli]
 gi|209775544|gb|ACI86084.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6
           [Escherichia coli]
 gi|209775546|gb|ACI86085.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6
           [Escherichia coli]
 gi|209911347|dbj|BAG76421.1| penicillin-binding protein 6 [Escherichia coli SE11]
 gi|215263997|emb|CAS08338.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218351045|emb|CAU96749.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli 55989]
 gi|218360193|emb|CAQ97743.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli IAI1]
 gi|218369200|emb|CAR16955.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli IAI39]
 gi|218426186|emb|CAR07008.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli ED1a]
 gi|218431360|emb|CAR12238.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli UMN026]
 gi|222032568|emb|CAP75307.1| Penicillin-binding protein 6 [Escherichia coli LF82]
 gi|254591435|gb|ACT70796.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli O157:H7 str. TW14359]
 gi|257752780|dbj|BAI24282.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O26:H11
           str. 11368]
 gi|257758237|dbj|BAI29734.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O103:H2
           str. 12009]
 gi|257763369|dbj|BAI34864.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O111:H-
           str. 11128]
 gi|281177974|dbj|BAI54304.1| penicillin-binding protein 6 [Escherichia coli SE15]
 gi|284920692|emb|CBG33755.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase)
           [Escherichia coli 042]
 gi|291323956|gb|EFE63378.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           B088]
 gi|305853522|gb|EFM53961.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           NC101]
 gi|306905947|gb|EFN36469.1| Beta-lactamase [Escherichia coli W]
 gi|307552682|gb|ADN45457.1| penicillin-binding protein 6 precursor [Escherichia coli ABU 83972]
 gi|312286540|gb|EFR14453.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 2362-75]
 gi|312945356|gb|ADR26183.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315060077|gb|ADT74404.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli W]
 gi|320637705|gb|EFX07497.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           O157:H7 str. G5101]
 gi|320642829|gb|EFX12030.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           O157:H- str. 493-89]
 gi|320648286|gb|EFX16941.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           O157:H- str. H 2687]
 gi|320654123|gb|EFX22191.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320659747|gb|EFX27303.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320664217|gb|EFX31368.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323155789|gb|EFZ41958.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli EPECa14]
 gi|323159661|gb|EFZ45640.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli E128010]
 gi|323165770|gb|EFZ51556.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella sonnei 53G]
 gi|323172242|gb|EFZ57880.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli LT-68]
 gi|323175540|gb|EFZ61135.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1180]
 gi|323185244|gb|EFZ70609.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1357]
 gi|323191008|gb|EFZ76275.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli RN587/1]
 gi|323379365|gb|ADX51633.1| Beta-lactamase [Escherichia coli KO11]
 gi|327253626|gb|EGE65255.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli STEC_7v]
          Length = 400

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 59  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 119 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 178

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 179 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 233

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 234 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279


>gi|323976776|gb|EGB71864.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TW10509]
          Length = 407

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 66  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 125

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 126 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 185

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 186 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 240

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 241 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 286


>gi|260450014|gb|ACX40436.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli DH1]
          Length = 400

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 59  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 119 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 178

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 179 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 233

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 234 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRFRFNESEKLLT 279


>gi|288549405|ref|ZP_06390668.1| hypothetical protein ENTCAN_05367 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318989|gb|EFC57927.1| D-alanyl-D-alanine carboxypeptidase DacA [Enterobacter cancerogenus
           ATCC 35316]
          Length = 408

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 126/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L+  + V K A AT NP     S ++LK    
Sbjct: 67  DEKLDPASLTKLMTSYVVGQALKAGKIKLDDMVTVGKDAWATGNPALRGSSVMFLKPGDR 126

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS+  F  LM+  A+++G+ NT +K   GL   
Sbjct: 127 VSVSDLNKGVIIQSGNDACIALADYVAGSQDSFIGLMNGYAQRLGLTNTTFKTVHGLDAP 186

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 187 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNVNVDG 241

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 242 MKTGTTAGAGYNLVASATQGDMRLISVVLGTKTDRIRFNESEKLLT 287


>gi|188533505|ref|YP_001907302.1| D-alanyl-D-alanine carboxypeptidase [Erwinia tasmaniensis Et1/99]
 gi|188028547|emb|CAO96409.1| Penicillin-binding protein 6B precursor (D-alanyl-D-alanine
           carboxypeptidase) [Erwinia tasmaniensis Et1/99]
          Length = 383

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 139/260 (53%), Gaps = 10/260 (3%)

Query: 35  LFLSIIMISMASELHAK--PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFE 91
           L +S+  ++ A+E+        S +++D    Q +T  + DE R PASLTK+MT Y++  
Sbjct: 11  LLISLYGVAHAAEVTPPVIDAASWVLMDATTGQILTSGQPDERRNPASLTKLMTGYVVDR 70

Query: 92  YLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVST 145
            +  K++  +  + V K A A  NP     S ++LK     +       +I  S ND   
Sbjct: 71  AIDQKRITRDDVVTVGKDAWAAGNPVFKGSSLMFLKPGEKVSVRDLSRGVIIDSGNDACV 130

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  ++++GS+  F  +M++  +K+G+ NT ++   GL    Q TTARD A L   +    
Sbjct: 131 ALADYVAGSQNNFVSMMNHYVEKLGLSNTHFETVHGLDAPGQFTTARDLATLSRAIISGE 190

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           P +Y+ +S +   +      N N LL +K  ++DG+KTG+T ++GFNI+ S       ++
Sbjct: 191 PDFYQMYSEKSLTWNGITQQNRNGLLWDKELHVDGLKTGHTESAGFNIIASSLDGQRRLI 250

Query: 265 AVVMGMPTSQERDQKALELI 284
           AVVMG  + + R+++A +L+
Sbjct: 251 AVVMGGKSPKGREEQARQLL 270


>gi|170681795|ref|YP_001742946.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           SMS-3-5]
 gi|187776239|ref|ZP_02801387.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4196]
 gi|188024947|ref|ZP_02775045.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4113]
 gi|189010000|ref|ZP_02804398.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4076]
 gi|189402327|ref|ZP_02781640.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4401]
 gi|189402936|ref|ZP_02792356.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4486]
 gi|189404286|ref|ZP_02788318.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4501]
 gi|189404921|ref|ZP_02812067.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC869]
 gi|189405883|ref|ZP_02824886.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC508]
 gi|191166209|ref|ZP_03028043.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A]
 gi|191173711|ref|ZP_03035234.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11]
 gi|193064478|ref|ZP_03045559.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22]
 gi|193069405|ref|ZP_03050360.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019]
 gi|194428152|ref|ZP_03060695.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B171]
 gi|208814959|ref|ZP_03256138.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4045]
 gi|208822498|ref|ZP_03262817.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4042]
 gi|209400303|ref|YP_002269508.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4115]
 gi|217324128|ref|ZP_03440212.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. TW14588]
 gi|291281838|ref|YP_003498656.1| Penicillin-binding protein 6 [Escherichia coli O55:H7 str. CB9615]
 gi|293404143|ref|ZP_06648137.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           FVEC1412]
 gi|293414116|ref|ZP_06656765.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           B185]
 gi|298379925|ref|ZP_06989530.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           FVEC1302]
 gi|331662200|ref|ZP_08363123.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli TA143]
 gi|331667211|ref|ZP_08368076.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli TA271]
 gi|170519513|gb|ACB17691.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli SMS-3-5]
 gi|187768212|gb|EDU32056.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4196]
 gi|188015679|gb|EDU53801.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4113]
 gi|189002710|gb|EDU71696.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4076]
 gi|189356271|gb|EDU74690.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4401]
 gi|189363476|gb|EDU81895.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4486]
 gi|189366544|gb|EDU84960.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4501]
 gi|189373161|gb|EDU91577.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC869]
 gi|189377784|gb|EDU96200.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC508]
 gi|190903818|gb|EDV63533.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A]
 gi|190905961|gb|EDV65577.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11]
 gi|192928940|gb|EDV82553.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22]
 gi|192957358|gb|EDV87806.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019]
 gi|194413712|gb|EDX29991.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B171]
 gi|208731607|gb|EDZ80295.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4045]
 gi|208737983|gb|EDZ85666.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4042]
 gi|209161703|gb|ACI39136.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4115]
 gi|217320349|gb|EEC28773.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. TW14588]
 gi|290761711|gb|ADD55672.1| Penicillin-binding protein 6 [Escherichia coli O55:H7 str. CB9615]
 gi|291428729|gb|EFF01754.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           FVEC1412]
 gi|291434174|gb|EFF07147.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           B185]
 gi|298279623|gb|EFI21131.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           FVEC1302]
 gi|320192682|gb|EFW67323.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320196666|gb|EFW71289.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli WV_060327]
 gi|320199030|gb|EFW73627.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli EC4100B]
 gi|326338272|gb|EGD62101.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           1125]
 gi|326346249|gb|EGD69987.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           1044]
 gi|330910581|gb|EGH39091.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli AA86]
 gi|331060622|gb|EGI32586.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli TA143]
 gi|331065567|gb|EGI37460.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli TA271]
          Length = 403

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 62  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 121

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 122 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 181

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 182 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 236

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 237 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 282


>gi|187730201|ref|YP_001880973.1| D-alanyl-D-alanine carboxypeptidase fraction C [Shigella boydii CDC
           3083-94]
 gi|187427193|gb|ACD06467.1| serine-type D-Ala-D-Ala carboxypeptidase [Shigella boydii CDC
           3083-94]
          Length = 400

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 59  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 119 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 178

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 179 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 233

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 234 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279


>gi|119946648|ref|YP_944328.1| Serine-type D-Ala-D-Ala carboxypeptidase [Psychromonas ingrahamii
           37]
 gi|119865252|gb|ABM04729.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Psychromonas ingrahamii 37]
          Length = 406

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 86/250 (34%), Positives = 139/250 (55%), Gaps = 14/250 (5%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
           LF +  +   A E+ AK     ++ID N  ++      + R  PASLTKMMT YII + +
Sbjct: 32  LFANPTITPSAPEIGAK---GYLLIDFNSGKVLSENNSDVRLNPASLTKMMTSYIIGQEI 88

Query: 94  QSKKLHLNTQIPVSKTAATQN---PSKLYL---KEKTYFTTEQGILALITRSANDVSTAF 147
           +S  L  + ++ +S+ A ++N    SK+++   KE +     +GI   I +S ND   A 
Sbjct: 89  KSGNLSPDDKVTISEKAWSKNFPESSKMFIEVGKEVSVADLNRGI---IIQSGNDACVAM 145

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E+I+GSE  FA LM++ A ++GM NT +KN+ GL  +   TT  D AIL   L  + P 
Sbjct: 146 AEYIAGSEGAFADLMNSWAAQLGMNNTQFKNSHGLTAEGHYTTPHDMAILAQALINDVPD 205

Query: 208 YYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
            Y  +S + F++      N N LL +K  ++DGIKTG+T  +G+++++S       +++V
Sbjct: 206 EYLIYSEKSFKFNGIDQPNRNALLWDKSLDVDGIKTGHTNEAGYSLISSATKDGMRLISV 265

Query: 267 VMGMPTSQER 276
           VMG  ++  R
Sbjct: 266 VMGTRSTSAR 275


>gi|331656861|ref|ZP_08357823.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli TA206]
 gi|331055109|gb|EGI27118.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli TA206]
          Length = 392

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 51  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 110

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 111 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 170

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 171 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 225

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 226 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 271


>gi|16128807|ref|NP_415360.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89107690|ref|AP_001470.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K-12
           substr. W3110]
 gi|157160319|ref|YP_001457637.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           HS]
 gi|170020804|ref|YP_001725758.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           ATCC 8739]
 gi|170080498|ref|YP_001729818.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli str. K-12 substr. DH10B]
 gi|188494572|ref|ZP_03001842.1| penicillin-binding protein 6 [Escherichia coli 53638]
 gi|238900098|ref|YP_002925894.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli BW2952]
 gi|253774159|ref|YP_003036990.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160916|ref|YP_003044024.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli B
           str. REL606]
 gi|256023565|ref|ZP_05437430.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia sp.
           4_1_40B]
 gi|297518732|ref|ZP_06937118.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           OP50]
 gi|312970918|ref|ZP_07785097.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1827-70]
 gi|2506804|sp|P08506|DACC_ECOLI RecName: Full=D-alanyl-D-alanine carboxypeptidase dacC;
           Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
           Full=Penicillin-binding protein 6; Short=PBP-6; Flags:
           Precursor
 gi|1651381|dbj|BAA35542.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K12
           substr. W3110]
 gi|1787062|gb|AAC73926.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli str. K-12 substr. MG1655]
 gi|157065999|gb|ABV05254.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli HS]
 gi|169755732|gb|ACA78431.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli ATCC
           8739]
 gi|169888333|gb|ACB02040.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli str. K-12 substr. DH10B]
 gi|188489771|gb|EDU64874.1| penicillin-binding protein 6 [Escherichia coli 53638]
 gi|238860730|gb|ACR62728.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli BW2952]
 gi|242376630|emb|CAQ31340.1| penicillin-binding protein 6 [Escherichia coli BL21(DE3)]
 gi|253325203|gb|ACT29805.1| Beta-lactamase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972817|gb|ACT38488.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli B str. REL606]
 gi|253977037|gb|ACT42707.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli BL21(DE3)]
 gi|309701117|emb|CBJ00415.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase)
           [Escherichia coli ETEC H10407]
 gi|310336679|gb|EFQ01846.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1827-70]
 gi|315619844|gb|EFV00363.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 3431]
 gi|332342172|gb|AEE55506.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli UMNK88]
          Length = 400

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 59  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 119 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 178

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 179 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 233

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 234 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279


>gi|319651421|ref|ZP_08005550.1| DacF protein [Bacillus sp. 2_A_57_CT2]
 gi|317396952|gb|EFV77661.1| DacF protein [Bacillus sp. 2_A_57_CT2]
          Length = 387

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 135/242 (55%), Gaps = 9/242 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +I E +   KL  + +I  S+ AA+   S+++L+     TT+Q +  + 
Sbjct: 60  PASMTKVMTMLLIMEAIDEGKLSWDEKIRTSEYAASMGGSQIFLEPGEEMTTKQMLQGIA 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND S A  E I+GSE+ F  +M+NKAK++G++NT ++N +GL  K   +TA D AI
Sbjct: 120 IGSGNDASVAMAERIAGSEEAFVEMMNNKAKELGLKNTNFQNPTGLSAKEHYSTAHDMAI 179

Query: 197 LGILLRK-----NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +   L K     +F   Y+ + +R+   +   + N N+L+     +DG+KTG+T  + + 
Sbjct: 180 MAKELLKYEKITDFTGTYEAY-LREDTDKKFWLVNTNRLVRFYPGVDGLKTGFTSEAKYC 238

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT-SFLEKKTLKHQQTHRKDNLSSTSLK 310
           +  +       ++AVV G PTS+ER+ +  +++  +F + KT  H    R   L   ++ 
Sbjct: 239 LTATAEKDGMRVIAVVFGAPTSKERNAQVTKMLDYAFSQYKT--HPMYERNHVLGKVAVS 296

Query: 311 KS 312
           K 
Sbjct: 297 KG 298


>gi|91209873|ref|YP_539859.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           UTI89]
 gi|117623019|ref|YP_851932.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           APEC O1]
 gi|237707198|ref|ZP_04537679.1| penicillin-binding protein 6 [Escherichia sp. 3_2_53FAA]
 gi|91071447|gb|ABE06328.1| penicillin-binding protein 6 precursor [Escherichia coli UTI89]
 gi|115512143|gb|ABJ00218.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli APEC O1]
 gi|226898408|gb|EEH84667.1| penicillin-binding protein 6 [Escherichia sp. 3_2_53FAA]
 gi|315287329|gb|EFU46740.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           110-3]
 gi|323953500|gb|EGB49366.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H252]
 gi|323958128|gb|EGB53837.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H263]
          Length = 407

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 66  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 125

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 126 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 185

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 186 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 240

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 241 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 286


>gi|331682347|ref|ZP_08382966.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli H299]
 gi|331079978|gb|EGI51157.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli H299]
          Length = 403

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 62  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 121

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 122 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 181

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 182 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 236

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 237 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 282


>gi|291539061|emb|CBL12172.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis XB6B4]
          Length = 348

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 131/249 (52%), Gaps = 10/249 (4%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           E R+PAS+TK+MTL +IF+ L SK++ L+  + VS+ AA+   S+++L+     T E  I
Sbjct: 16  EARHPASVTKIMTLLLIFDALSSKQISLDDTVTVSEYAASIGGSQVFLEPGETQTVETMI 75

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             +   SAND   A  E ++GSE +F  +M+ +AK +GM +T + N  GL     +T+A 
Sbjct: 76  KCISVASANDACVAMAEHVAGSESEFVRMMNERAKGLGMNDTNFVNCCGLDADGHMTSAN 135

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRI--------ITNHNKLLNKMHNIDGIKTGY 244
           D A++   L   +P+ + Y +I      +          +TN NKL+       G+KTG+
Sbjct: 136 DIALMSRELITKYPKIHDYCTIWMENITHTTAKGSSEFGLTNTNKLIKHYQYATGLKTGF 195

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNL 304
           T  + + I  + +  D  ++AV+MG P  + R   A  L+     K  + +  +H +D L
Sbjct: 196 TNTAMYCISATAKKDDMELIAVIMGAPDIKSRSADATTLLNYGFGKCRI-YCDSH-EDKL 253

Query: 305 SSTSLKKSL 313
               +KK L
Sbjct: 254 DDLPVKKGL 262


>gi|315135488|dbj|BAJ42647.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           DH1]
          Length = 403

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 62  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 121

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 122 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 181

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 182 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 236

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 237 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRFRFNESEKLLT 282


>gi|269961828|ref|ZP_06176185.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi 1DA3]
 gi|269833406|gb|EEZ87508.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi 1DA3]
          Length = 389

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 71/213 (33%), Positives = 120/213 (56%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + ++S  + L+ ++ +S+ A  +N    SK++++  T  +      
Sbjct: 62  PASLTKLMTAYVAGQEVKSGNISLDDEVVISRNAWAKNFPDSSKMFIEVGTSVSLSDLYR 121

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GSE  F  LM++ A ++G+ N+ + N  GL      +T RD
Sbjct: 122 GLIVQSGNDASVAIAEHVAGSEAGFVGLMNSWANQLGLSNSAFTNPHGLDSDGLYSTPRD 181

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A LG  + ++ P  Y  +S   F Y      N N LL ++  ++DG+KTGYT  +G+++
Sbjct: 182 IATLGRAIIRDLPDIYPLYSETSFTYNGITQYNRNGLLRDRSMSVDGMKTGYTSGAGYSL 241

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            TS    D  +VAVVMG  +   R+ ++ +L++
Sbjct: 242 ATSATNGDMRLVAVVMGAKSPSVRESESKQLLS 274


>gi|315633663|ref|ZP_07888953.1| D-alanyl-D-alanine carboxypeptidase DacA [Aggregatibacter segnis
           ATCC 33393]
 gi|315477705|gb|EFU68447.1| D-alanyl-D-alanine carboxypeptidase DacA [Aggregatibacter segnis
           ATCC 33393]
          Length = 399

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 138/262 (52%), Gaps = 16/262 (6%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           I++D N    +     D+ +YPASLTKMMT Y+  + L+  K+H    + + ++A  QN 
Sbjct: 48  ILMDYNSGTVLVALNPDQRQYPASLTKMMTSYVTGQALKQGKIHDTDVVTIGESAWGQNF 107

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L      +       ++  S ND   A  E +SG+   F   M+   ++ G++
Sbjct: 108 PGSSKMFLNLNQQVSVADLNRGIVIVSGNDACVAMAEHVSGTVTNFVATMNKYVEQFGLK 167

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           NT +    GL D+NQ ++ARD AI+G  + ++ P+ YK ++ + F +      N N LL 
Sbjct: 168 NTHFTTVHGLDDENQYSSARDMAIIGAHIIRDLPEEYKIYAEKDFTFNKIKQPNRNGLLW 227

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKA---------- 280
           +K  ++DG+KTG+T  +G+N+V S    ++  +++VVMG+PT + R+ ++          
Sbjct: 228 DKTIHVDGMKTGHTDKAGYNLVASATNPNNMRLISVVMGVPTYKGREVESKKLLQWGFAN 287

Query: 281 LELITSFLEKKTLKHQQTHRKD 302
            E   +F   K +  Q+ +  D
Sbjct: 288 FETFKTFEAGKAISEQRVYYGD 309


>gi|255261606|ref|ZP_05340948.1| D-alanyl-D-alanine carboxypeptidase [Thalassiobium sp. R2A62]
 gi|255103941|gb|EET46615.1| D-alanyl-D-alanine carboxypeptidase [Thalassiobium sp. R2A62]
          Length = 389

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 130/242 (53%), Gaps = 18/242 (7%)

Query: 55  SSIVIDVNKNQMTGF-----KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           ++IVID    Q TG        DE   PAS++K+MTLY+ FE +   +L L+ ++PVS+ 
Sbjct: 33  AAIVID----QTTGTLLMEKNADEALPPASMSKLMTLYMAFEAVSDGRLRLDEELPVSQH 88

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAK 167
           A     S ++LK       E  I  +I  S ND      E +S  G+E  F  +M+ +A+
Sbjct: 89  AMNYGGSTMFLKRGERVKVEDLIRGIIVLSGNDACAVIAEALSTDGTEAGFGRMMTARAR 148

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNR 222
           ++GM N+ + N++G        + RD +IL   L  ++P YY  FS ++F +     +NR
Sbjct: 149 ELGMMNSTFTNSNGWPQAGHRMSMRDLSILADRLITDYPTYYPLFSQKEFMFDEKESKNR 208

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           +  N N LL      DG+KTG+T  +G+ +V S +  +  I+ V+ G+ ++  R +++ +
Sbjct: 209 L--NRNPLLGLGIGADGLKTGHTNEAGYGLVGSAKQGNRRIIFVITGLDSAAARAEESEK 266

Query: 283 LI 284
           ++
Sbjct: 267 IV 268


>gi|194438401|ref|ZP_03070491.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1]
 gi|301027029|ref|ZP_07190410.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           196-1]
 gi|307137467|ref|ZP_07496823.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           H736]
 gi|194422625|gb|EDX38622.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1]
 gi|299879457|gb|EFI87668.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           196-1]
          Length = 403

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 62  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 121

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 122 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 181

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 182 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 236

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 237 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 282


>gi|290473971|ref|YP_003466845.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
           [Xenorhabdus bovienii SS-2004]
 gi|289173278|emb|CBJ80053.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
           [Xenorhabdus bovienii SS-2004]
          Length = 401

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/266 (33%), Positives = 141/266 (53%), Gaps = 15/266 (5%)

Query: 45  ASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A E+ AK   S I++D    + +     DE   PASLTK+MT Y++ + ++S K+    Q
Sbjct: 35  APEIDAK---SYILMDYASGKILASHNPDERLDPASLTKVMTSYVVGQSIKSGKISTEDQ 91

Query: 104 IPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           + V K A AT NP     S ++LK             ++ +S ND S A  ++++GS+  
Sbjct: 92  VTVGKDAWATGNPALKGSSLMFLKPGDRVKVIDLNRGIVIQSGNDASIALADYVAGSQDA 151

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F  LM+  +K +G++NT +K   GL    Q +TARD A+L   + ++ P+ Y     ++F
Sbjct: 152 FVDLMNKYSKTLGLENTHFKTVHGLDAAGQYSTARDMALLSQAMIRDVPEEYALNKEKEF 211

Query: 218 RYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
            + N    N N+LL N+  N+DG+KTG+T  +G+N+V S       +++VV+G P+ + R
Sbjct: 212 TFNNIRQPNRNRLLWNQNMNVDGVKTGHTSGAGYNLVASAAEGSMRLISVVLGAPSDRMR 271

Query: 277 ---DQKALELITSFLEKKT-LKHQQT 298
               +K L     F E  T LK   T
Sbjct: 272 FSDSEKILSWGFRFYEASTPLKASDT 297


>gi|300929353|ref|ZP_07144826.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           187-1]
 gi|300947071|ref|ZP_07161292.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           116-1]
 gi|300957042|ref|ZP_07169288.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           175-1]
 gi|301646276|ref|ZP_07246167.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           146-1]
 gi|331641359|ref|ZP_08342494.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli H736]
 gi|300316182|gb|EFJ65966.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           175-1]
 gi|300453310|gb|EFK16930.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           116-1]
 gi|300462699|gb|EFK26192.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           187-1]
 gi|301075479|gb|EFK90285.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           146-1]
 gi|323938194|gb|EGB34454.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1520]
 gi|323942711|gb|EGB38876.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E482]
 gi|323962952|gb|EGB58524.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H489]
 gi|331038157|gb|EGI10377.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli H736]
          Length = 407

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 66  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 125

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 126 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 185

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 186 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 240

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 241 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 286


>gi|26246814|ref|NP_752854.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           CFT073]
 gi|227884197|ref|ZP_04002002.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           83972]
 gi|261258542|ref|ZP_05951075.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           O157:H7 str. FRIK966]
 gi|293409214|ref|ZP_06652790.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           B354]
 gi|300817100|ref|ZP_07097319.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           107-1]
 gi|300823980|ref|ZP_07104102.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           119-7]
 gi|300895754|ref|ZP_07114347.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           198-1]
 gi|300907171|ref|ZP_07124834.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1]
 gi|300924447|ref|ZP_07140417.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           182-1]
 gi|300939883|ref|ZP_07154518.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1]
 gi|300991867|ref|ZP_07179692.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           200-1]
 gi|300993443|ref|ZP_07180385.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1]
 gi|301020649|ref|ZP_07184722.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1]
 gi|301051233|ref|ZP_07198062.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           185-1]
 gi|301303598|ref|ZP_07209720.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           124-1]
 gi|301325847|ref|ZP_07219280.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1]
 gi|309795413|ref|ZP_07689831.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           145-7]
 gi|331646058|ref|ZP_08347161.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli M605]
 gi|331651852|ref|ZP_08352871.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli M718]
 gi|331676578|ref|ZP_08377274.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli H591]
 gi|26107214|gb|AAN79397.1|AE016758_1 Penicillin-binding protein 6 precursor [Escherichia coli CFT073]
 gi|227838949|gb|EEJ49415.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           83972]
 gi|291469682|gb|EFF12166.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           B354]
 gi|300297140|gb|EFJ53525.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           185-1]
 gi|300305477|gb|EFJ59997.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           200-1]
 gi|300360328|gb|EFJ76198.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           198-1]
 gi|300398577|gb|EFJ82115.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1]
 gi|300401046|gb|EFJ84584.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1]
 gi|300406557|gb|EFJ90095.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1]
 gi|300419332|gb|EFK02643.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           182-1]
 gi|300455265|gb|EFK18758.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1]
 gi|300523491|gb|EFK44560.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           119-7]
 gi|300530452|gb|EFK51514.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           107-1]
 gi|300841097|gb|EFK68857.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           124-1]
 gi|300847361|gb|EFK75121.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1]
 gi|308121063|gb|EFO58325.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           145-7]
 gi|315257828|gb|EFU37796.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 85-1]
 gi|315292514|gb|EFU51866.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           153-1]
 gi|315299413|gb|EFU58665.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 16-3]
 gi|323947137|gb|EGB43148.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H120]
 gi|323967274|gb|EGB62697.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli M863]
 gi|323969597|gb|EGB64885.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TA007]
 gi|324009727|gb|EGB78946.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 57-2]
 gi|324013062|gb|EGB82281.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 60-1]
 gi|324015963|gb|EGB85182.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           117-3]
 gi|324116152|gb|EGC10075.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1167]
 gi|331044810|gb|EGI16937.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli M605]
 gi|331050130|gb|EGI22188.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli M718]
 gi|331075267|gb|EGI46565.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli H591]
          Length = 407

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 66  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 125

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 126 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 185

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 186 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 240

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 241 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 286


>gi|163760149|ref|ZP_02167232.1| penicillin binding protein [Hoeflea phototrophica DFL-43]
 gi|162282548|gb|EDQ32836.1| penicillin binding protein [Hoeflea phototrophica DFL-43]
          Length = 394

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 122/225 (54%), Gaps = 8/225 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYFTTEQG 131
           PASL K+MT+ ++F  ++S +L L+    VS+ A     A    S ++ +  +    E  
Sbjct: 67  PASLAKLMTMEVVFNAIRSGRLTLDDTFQVSENAWRTGGAISRTSTMFAELNSSIRLEDL 126

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           I  +I +SAND      E ++GSE  F+ LMS +A+ IG+  +++ N+SGL   +   + 
Sbjct: 127 IQGVIVQSANDGCIIIAEGMAGSEDNFSRLMSERARDIGLTQSVFANSSGLPHPHSKVSM 186

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +D   L   +   +P++Y+Y+S  +F + N    N N LLN    +DG+KTG+T  SG+ 
Sbjct: 187 KDLVTLARHIHATYPEFYRYYSQPEFTWNNIRQRNRNPLLNLDIGVDGLKTGFTEESGYG 246

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKA---LELITSFLEKKTL 293
           IV S+R     +   + G+ + +ER ++A   LE      E+KTL
Sbjct: 247 IVASIRRDGRRLFVAMSGLSSERERAEEARKMLEWGVRAFERKTL 291


>gi|294083925|ref|YP_003550682.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663497|gb|ADE38598.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 394

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 131/241 (54%), Gaps = 6/241 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+ K+MT++I FE ++   L LN +  VS+ A  +  S+ +L+  ++ T    +  +I
Sbjct: 60  PASMAKIMTIFIAFERIREGGLSLNDKFQVSEKAWRKGGSRSFLEVGSFVTVSDLLNGVI 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND +    E ISG+E+ FA  M+  A+K+GM+NT+++N++G  D    TTA+D  I
Sbjct: 120 VQSGNDAAIVIAEGISGTEESFAEEMNFWAQKLGMENTVFRNSTGWPDPELTTTAKDLNI 179

Query: 197 LGILLRKNF-----PQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           L   L   F     P  Y  F  ++F Y      N N L+      DG+KTG+T+ SG+ 
Sbjct: 180 LSSALISRFPIDEYPDLYPMFKKKRFEYNGIDQPNRNPLVYGTVGADGLKTGHTKESGYG 239

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT-SFLEKKTLKHQQTHRKDNLSSTSLK 310
           +V S   +   +V V+ GM + ++R  ++  L+  +F E K  +  + +   ++++  L 
Sbjct: 240 VVGSAIREGQRVVMVLNGMTSMKQRSAESRRLMDLAFREFKQYRFFEANETVDVANVWLG 299

Query: 311 K 311
           K
Sbjct: 300 K 300


>gi|83858300|ref|ZP_00951822.1| penicillin binding protein [Oceanicaulis alexandrii HTCC2633]
 gi|83853123|gb|EAP90975.1| penicillin binding protein [Oceanicaulis alexandrii HTCC2633]
          Length = 399

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 139/273 (50%), Gaps = 12/273 (4%)

Query: 34  ILFLSIIMISMASELHAKPKYS-----SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLY 87
           +  L++I +S++    A+  +      ++++D     +   K  +EP  PAS++K+MT  
Sbjct: 23  LCLLALITVSLSPSAMAQSAFDTRASHAVILDYESGDVLFSKNGEEPMPPASMSKLMTAL 82

Query: 88  IIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           ++FE L+  +  L+T +PVS+ A     A    S ++L   +       I  +I +S ND
Sbjct: 83  MVFEALEDGRFTLDTSLPVSENAWRRGGAASGSSTMFLDVNSRAEVGDLIRGIIVQSGND 142

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
                 E + G+E+ FA +M+ +A ++G+++  + NA+G  D +   +A D A L   + 
Sbjct: 143 ACIVVAEALGGTEENFAQMMTERAHELGLESASFANATGWPDPDHRISALDLARLARHII 202

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           + +PQYY  +S  +F Y      N N LL      DG+KTG+T  SG+ +V S     + 
Sbjct: 203 ETYPQYYDIYSETEFTYNGIRQYNRNPLLGVFDGADGLKTGHTEESGYGLVASAERDGER 262

Query: 263 IVAVVMGMPTSQERDQKALELI-TSFLEKKTLK 294
            + V  GM +++ R  ++  L+  +F E  T+ 
Sbjct: 263 RIVVFNGMDSNRARADESERLMRAAFSEFSTVD 295


>gi|254478674|ref|ZP_05092045.1| D-alanyl-D-alanine carboxypeptidase family [Carboxydibrachium
           pacificum DSM 12653]
 gi|214035361|gb|EEB76064.1| D-alanyl-D-alanine carboxypeptidase family [Carboxydibrachium
           pacificum DSM 12653]
          Length = 377

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 72/205 (35%), Positives = 118/205 (57%), Gaps = 3/205 (1%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           P  PAS+TK+MTL +  E + S K+ +  ++  SK A     +++YL+     T +  + 
Sbjct: 50  PLPPASVTKVMTLLLAIEAIDSGKIKVTDKVVTSKHAFDMGGTQIYLEVGEEMTVDDLMK 109

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           A+   SAND S A  E+I+G+E+ F  +M+ +AK++G +NT +KNA+GL ++  +TT  D
Sbjct: 110 AIAMNSANDASVALAEYIAGTEENFVEMMNKRAKELGAKNTTFKNATGLPEEGHLTTVYD 169

Query: 194 QAILGILLRKNFPQYYKYFS--IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            A++   L K+ P  +KY +  I   R     + N NKLL +   +DGIKTG T  + + 
Sbjct: 170 IAMISRELVKH-PSIFKYLTNKIDSLRNGKFSLINTNKLLWRYQGVDGIKTGSTSEALYC 228

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQER 276
           +  + +  D  ++AVV G P S+ R
Sbjct: 229 MAATAKRGDTRLIAVVFGAPDSETR 253


>gi|262403437|ref|ZP_06079995.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC586]
 gi|262349941|gb|EEY99076.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC586]
          Length = 389

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 125/215 (58%), Gaps = 8/215 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + ++   +H   Q+ +S  A  +   + SK++++  +Y        
Sbjct: 62  PASLTKLMTSYVAGQEMKRGNIHAQDQVRISNNAWAKKFPDSSKMFIEVGSYVNLMDLYR 121

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL + N  +T  D
Sbjct: 122 GLIVQSGNDASVAIAEHVAGSESAFVSLMNSWAQQLGMNNSSFANPHGLDNPNLYSTPYD 181

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK---LLNKMHNIDGIKTGYTRNSGF 250
            A+LG  + ++ P+ Y  +S   F Y    IT HN+   L ++  N+DG+KTGYT  +G+
Sbjct: 182 IALLGQAIIRDLPEIYPLYSELSFTYNG--ITQHNRNGLLRDRSMNVDGMKTGYTSGAGY 239

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           ++ +S    D  +++VVMG  +++ R+ ++ +L++
Sbjct: 240 SLASSATSGDMRLISVVMGSKSTKIREAESKQLLS 274


>gi|153833629|ref|ZP_01986296.1| penicillin-binding protein 5 [Vibrio harveyi HY01]
 gi|156977638|ref|YP_001448544.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi ATCC BAA-1116]
 gi|148870027|gb|EDL68982.1| penicillin-binding protein 5 [Vibrio harveyi HY01]
 gi|156529232|gb|ABU74317.1| hypothetical protein VIBHAR_06426 [Vibrio harveyi ATCC BAA-1116]
          Length = 389

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 71/213 (33%), Positives = 120/213 (56%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + ++S  + L+ ++ +S+ A  +N    SK++++  T  +      
Sbjct: 62  PASLTKLMTAYVAGQEVKSGNISLDDEVVISRNAWAKNFPDSSKMFIEVGTSVSLSDLYR 121

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GSE  F  LM++ A ++G+ N+ + N  GL      +T RD
Sbjct: 122 GLIVQSGNDASVAIAEHVAGSEAGFVGLMNSWANQLGLSNSAFTNPHGLDSDGLYSTPRD 181

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A LG  + ++ P  Y  +S   F Y      N N LL ++  ++DG+KTGYT  +G+++
Sbjct: 182 IATLGRAIIRDLPDIYPLYSETSFTYNGITQYNRNGLLRDRSMSVDGMKTGYTSGAGYSL 241

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            TS    D  +VAVVMG  +   R+ ++ +L++
Sbjct: 242 ATSATNGDMRLVAVVMGAKSPSVRESESKQLLS 274


>gi|59711352|ref|YP_204128.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Vibrio fischeri ES114]
 gi|197335666|ref|YP_002155507.1| D-alanyl-D-alanine carboxypeptidase DacC [Vibrio fischeri MJ11]
 gi|59479453|gb|AAW85240.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Vibrio fischeri ES114]
 gi|197317156|gb|ACH66603.1| D-alanyl-D-alanine carboxypeptidase DacC [Vibrio fischeri MJ11]
          Length = 391

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 73/212 (34%), Positives = 120/212 (56%), Gaps = 4/212 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I + ++S  + ++  + +SK A  +N    SK++++  +     +   
Sbjct: 63  PASLTKMMTSYVIGQEIESGNISMDDDVVISKNAWAKNFPGSSKMFIEVGSTVKVRELNK 122

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E ++GSE  F  LM+  AK + ++NT + N  GL   +  +T  D
Sbjct: 123 GIIIQSGNDACVAMAEHVAGSEDAFVDLMNAWAKTLNLKNTHFANVHGLDRDDLYSTPYD 182

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A++G  L ++ P+ Y+ +S + F Y      N N LL +K  N+DGIKTG+T  +GFN+
Sbjct: 183 MALIGQALIRDVPEEYRVYSEKSFTYNGITQYNRNGLLWDKSMNVDGIKTGHTNGAGFNL 242

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           V+S       +VAVVMG  +   R  ++ +L+
Sbjct: 243 VSSATEGKMRLVAVVMGTKSGNARKAESKKLL 274


>gi|228998860|ref|ZP_04158445.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus mycoides Rock3-17]
 gi|228760876|gb|EEM09837.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus mycoides Rock3-17]
          Length = 386

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 137/242 (56%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 31  AEEASSAIVIEQDTGKVLFEKSPNEKLPPASMTKIMTMLLIMEQVEKGKLKLEDKVRASE 90

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 91  HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 150

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D +I+        L+RK   +Y  Y  +R+   +  
Sbjct: 151 LGLKNTHFQNPTGLPAKDHYSTAYDMSIMAKELMKYPLIRKYTGKYEDY--LRENTEKKF 208

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +
Sbjct: 209 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTK 268

Query: 283 LI 284
           L+
Sbjct: 269 LL 270


>gi|228992815|ref|ZP_04152740.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus pseudomycoides DSM 12442]
 gi|228766864|gb|EEM15502.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus pseudomycoides DSM 12442]
          Length = 386

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 137/242 (56%), Gaps = 9/242 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 31  AEEASSAIVIEQDTGKVLFEKSPNEKLPPASMTKIMTMLLIMEQVEKGKLKLEDKVRASE 90

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 91  HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 150

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNR 222
           +G++NT ++N +GL  K+  +TA D +I+        L+RK   +Y  Y  +R+   +  
Sbjct: 151 LGLKNTHFQNPTGLPAKDHYSTAYDMSIMAKELMKYPLIRKYTGKYEDY--LRENTEKKF 208

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +
Sbjct: 209 WLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTK 268

Query: 283 LI 284
           L+
Sbjct: 269 LL 270


>gi|15603792|ref|NP_246866.1| DacA [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12722361|gb|AAK04011.1| DacA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 394

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 134/234 (57%), Gaps = 6/234 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           I++D N    +     D+ +YPASLTKMMT Y++ + L+  K++   ++ + ++A  +N 
Sbjct: 43  ILMDYNSGAVIAALNPDQRQYPASLTKMMTSYVVGDALKQGKINNADRVTIGESAWGKNF 102

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L      +       +I  S ND S A  E ++GS   F   M+  A++ G++
Sbjct: 103 PGSSKMFLNLNQQVSVSDLNRGVIIVSGNDASVAIAEHVAGSVPAFVDAMNKYAQQFGLK 162

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           NT +    GL + NQ ++ARD AI+G  L ++ P+ YK ++ + F +      N N LL 
Sbjct: 163 NTHFTTVHGLDEDNQYSSARDMAIIGAHLIRDLPEEYKIYAEKDFTFNKIKQNNRNGLLW 222

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELI 284
           +K   +DGIKTG+T  +G+N+V S    ++  +++VVMG+PT + R+ ++ +L+
Sbjct: 223 DKSIQVDGIKTGHTDKAGYNLVASATNANNMRLISVVMGVPTIKGREVESKKLL 276


>gi|257413914|ref|ZP_04744661.2| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis
           L1-82]
 gi|257201876|gb|EEV00161.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis
           L1-82]
          Length = 402

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 131/249 (52%), Gaps = 10/249 (4%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           E R+PAS+TK+MTL +IF+ L SK++ L+  + VS+ AA+   S+++L+     T E  I
Sbjct: 70  EARHPASVTKIMTLLLIFDALSSKQISLDDTVTVSEYAASMGGSQVFLEPGETQTVETMI 129

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             +   SAND   A  E ++GSE +F  +M+ +AK +GM +T + N  GL     +T+A 
Sbjct: 130 KCISVASANDACVAMAEHVAGSESEFVRMMNERAKGLGMNDTNFVNCCGLDADGHMTSAN 189

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRI--------ITNHNKLLNKMHNIDGIKTGY 244
           D A++   L   +P+ + Y +I      +          +TN NKL+       G+KTG+
Sbjct: 190 DIALMSRELITKYPKIHDYCTIWMENITHTTAKGSSEFGLTNTNKLIKHYQYATGLKTGF 249

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNL 304
           T  + + I  + +  D  ++AV+MG P  + R   A  L+     K  + +  +H +D L
Sbjct: 250 TNTAMYCISATAKKDDMELIAVIMGAPDIKSRSADATTLLNYGFGKCRI-YCDSH-EDKL 307

Query: 305 SSTSLKKSL 313
               ++K L
Sbjct: 308 DDLPVEKGL 316


>gi|258623181|ref|ZP_05718190.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM573]
 gi|258625506|ref|ZP_05720398.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM603]
 gi|258582212|gb|EEW07069.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM603]
 gi|258584479|gb|EEW09219.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM573]
          Length = 413

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 157/299 (52%), Gaps = 21/299 (7%)

Query: 6   IQSSAKKTFLTYPYGSIYIQRNIQLMGKILF-LSIIMISMASELH--------AKPKYSS 56
           ++ S  K F+ Y    ++I  ++    K LF LS+  ++    L           P+ ++
Sbjct: 2   VKRSCAKFFVGYTACLVFIGGHVMTSTKFLFRLSMACMAFVPTLGFSALTITPEPPQLAA 61

Query: 57  ---IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
              ++ID +  ++   +    +  PASLTK+MT Y+  + ++   +H   Q+ +S  A  
Sbjct: 62  NGYVLIDYHTGKILVERNAHQKLNPASLTKLMTAYVAGQEMKRGNIHAEDQVRISNNAWA 121

Query: 113 Q---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +   + SK++++  +Y         LI +S ND S A  E ++GSE  F  LM++ A+++
Sbjct: 122 KKFPDSSKMFIEVGSYVNLMDLYRGLIVQSGNDASVAIAEHVAGSESAFVSLMNSWAQQL 181

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM N+ + N  GL D N  +T  D A+LG  + ++ P  Y  +S   F Y    IT HN+
Sbjct: 182 GMNNSSFANPHGLDDSNLYSTPYDIALLGQAIIRDLPDIYPLYSELSFTYNG--ITQHNR 239

Query: 230 ---LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
              L ++  N+DG+KTGYT  +G+++ +S    +  +++VVMG  + + R+ ++ +L++
Sbjct: 240 NGLLRDRSMNVDGMKTGYTSGAGYSLASSATSGEMRLISVVMGSKSVKIREAESKQLLS 298


>gi|90417678|ref|ZP_01225590.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337350|gb|EAS51001.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 364

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 115/218 (52%), Gaps = 5/218 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYF 126
           D P  PASL KMMT+ I+F  ++   L L+T+ PVS+ A     A    S ++ + K+  
Sbjct: 28  DAPFPPASLAKMMTMEIVFAAIKDGTLTLDTEFPVSEHAWRTGGAPSRTSTMFAELKSQV 87

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
                I   I +SAND +    E + GSE  FA  M+ +A+++GM N+ + N +GL   +
Sbjct: 88  PVSALIRGAIIQSANDAAIVIAEGMEGSEAAFAERMNARARELGMINSRFANPTGLPADD 147

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           Q  TARD   L   LR  +P+ Y  ++   F +      N N LL+     DGI+TGYT 
Sbjct: 148 QYVTARDLITLARHLRSTYPELYAIYAEPAFEWNKIFQRNRNPLLSMEIGADGIETGYTE 207

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            SGF++V +  +     +  V G+ T+ +R  +A +L+
Sbjct: 208 ASGFSLVGATSHGGRDTLLAVSGLETAGDRASEARKLL 245


>gi|323493053|ref|ZP_08098187.1| D-alanyl-D-alanine carboxypeptidase [Vibrio brasiliensis LMG 20546]
 gi|323312701|gb|EGA65831.1| D-alanyl-D-alanine carboxypeptidase [Vibrio brasiliensis LMG 20546]
          Length = 398

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 122/213 (57%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + ++S  + L+ Q+ +S+ A  +N    SK++++  T         
Sbjct: 71  PASLTKLMTAYVAGQEVKSGNISLDDQVRISRNAWAKNFPDSSKMFIEVGTDVELMDLYR 130

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GSE  F  LM++ ++K+G++NT Y N  GL  +   +T  D
Sbjct: 131 GLIVQSGNDASVAIAEHVAGSEDAFVSLMNSWSQKLGLENTAYTNPHGLDSQGLYSTPHD 190

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A L   + ++ P  Y  +S   F Y      N N LL ++  N+DG+KTGYT  +G+++
Sbjct: 191 IARLSQAIIRDLPDIYPLYSETAFTYNGITQYNRNGLLRDRSLNVDGMKTGYTSGAGYSL 250

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            TS    D  +V+VVMG  +++ R+ ++ +L++
Sbjct: 251 ATSATNGDMRLVSVVMGSSSTKSRESESKQLLS 283


>gi|313901070|ref|ZP_07834558.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. HGF2]
 gi|312954028|gb|EFR35708.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. HGF2]
          Length = 395

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 118/210 (56%), Gaps = 6/210 (2%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPAS+TKMM L +IFE L  KK+  +  +  S+ AA+   S+++L+     +    + ++
Sbjct: 68  YPASMTKMMGLLLIFEALHDKKISWDESVSASEYAASMGGSQVFLEPGESMSVRDMVKSI 127

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
              SAND   A  E + GS   F  +M++KAK++ + N+ + NA+GLHD    T A+D +
Sbjct: 128 CIASANDAMVAMAEKVGGSNDHFVAMMNDKAKELKLSNSHFMNATGLHDPEHYTCAKDMS 187

Query: 196 ILG-ILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
           I+   L+ +   +  +  S     IR+   +   + N NKLL +   +DG+KTG+T  + 
Sbjct: 188 IIARALIAEGGEELLRITSTYDAYIRENTDKKFWLVNTNKLLKQYEGVDGLKTGFTTEAM 247

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
             I  + + KD  +VAV MG P+S++R+ +
Sbjct: 248 SCITVTAKKKDLRLVAVAMGEPSSKQRNAE 277


>gi|90415028|ref|ZP_01222988.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
           profundum 3TCK]
 gi|90323842|gb|EAS40448.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
           profundum 3TCK]
          Length = 393

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/212 (34%), Positives = 123/212 (58%), Gaps = 4/212 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + ++   +  +  + +S+ A  +N    SK++++  T  +      
Sbjct: 65  PASLTKLMTSYVAGQEMKRGNISQDDIVVISRNAWARNFSDSSKMFIEVGTEVSMMDLYR 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GS+  F  LM++ AK +GM N+ + NA GL + N  +T  D
Sbjct: 125 GLIIQSGNDASVAIAEHVAGSQDAFVGLMNSWAKNLGMNNSQFANAHGLDNPNLYSTPYD 184

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A+LG  L K+ P  Y  +S R F Y N    N N LL +K  N+DG+KTGYT  +G+++
Sbjct: 185 IALLGQALIKDLPDLYPLYSERSFTYNNITQRNRNGLLGDKSINVDGMKTGYTGGAGYSL 244

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +S    +  +++VVMG  +++ R+ ++ +L+
Sbjct: 245 ASSATQGNMRLISVVMGSSSTKSREAESKQLL 276


>gi|262394994|ref|YP_003286848.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25]
 gi|262338588|gb|ACY52383.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25]
          Length = 392

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/213 (35%), Positives = 117/213 (54%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I + L    +  +  + +SK A  +N    SK++++  T         
Sbjct: 65  PASLTKMMTSYVIGQELARGNISEDDDVTISKNAWAKNFPESSKMFIEVGTTVKVRDLNR 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E I+GSE  F  LM+  A  +GM N+ + N  GL +    +T  D
Sbjct: 125 GIIVQSGNDACVAMAEHIAGSEDAFVDLMNAWANTLGMTNSHFANVHGLDNAELYSTPYD 184

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A+LG  L ++ P  Y+ +S +KF Y      N N LL +K  N+DGIKTG+T N+G+++
Sbjct: 185 MALLGKALIRDVPNEYRVYSEKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSL 244

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           V+S       +VAVVMG   +  R  ++ +L++
Sbjct: 245 VSSATEGQMRLVAVVMGTKDANARKSESKKLLS 277


>gi|229086646|ref|ZP_04218815.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock3-44]
 gi|228696728|gb|EEL49544.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock3-44]
          Length = 386

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 139/250 (55%), Gaps = 14/250 (5%)

Query: 47  ELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           E+   PK      S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L
Sbjct: 23  EVETGPKLAEQASSAIVIEQDTGKVLFEKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKL 82

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
             ++  S+ AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  
Sbjct: 83  EDKVRASEHAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVN 142

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG------ILLRKNFPQYYKYFSI 214
           +M+ KAK +G++NT ++N +GL  K+  +TA D +I+        L+RK   +Y  Y  +
Sbjct: 143 MMNKKAKDLGLKNTHFQNPTGLPAKDHYSTAYDMSIMAKELMKYPLIRKYTGKYEDY--L 200

Query: 215 RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           R+   +   + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+
Sbjct: 201 RENTEKKFWLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSK 260

Query: 275 ERDQKALELI 284
           ER+ +  +L+
Sbjct: 261 ERNNQVTKLL 270


>gi|84516821|ref|ZP_01004179.1| D-alanyl-D-alanine carboxypeptidase [Loktanella vestfoldensis
           SKA53]
 gi|84509289|gb|EAQ05748.1| D-alanyl-D-alanine carboxypeptidase [Loktanella vestfoldensis
           SKA53]
          Length = 392

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 120/218 (55%), Gaps = 5/218 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D P  PAS++K+MT+Y+ FE +   +L ++  +PVS  AA+   S ++L        E  
Sbjct: 49  DLPLPPASMSKLMTIYMAFEAIADGRLSIDDVLPVSAHAASFGGSSMFLDTTDRVRVEDL 108

Query: 132 ILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           +  +I  S ND S    E +S  G+E  F  +M+++A+++GM  + + NASG        
Sbjct: 109 LRGVIVLSGNDASVVLAEALSPDGTEAGFGRMMTDRARQLGMTQSFFVNASGWPAAEHRM 168

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT---NHNKLLNKMHNIDGIKTGYTR 246
           + +D  IL   L  +FP +Y  FS  +F + NR+ +   N N +L      DG+KTG+T+
Sbjct: 169 SVKDLGILSSRLISDFPTFYPLFSETEFAFDNRVPSNSQNRNPILAMGIGADGLKTGHTQ 228

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +G+ +V S    +  ++ VV G+ T+++R +++  ++
Sbjct: 229 EAGYGLVGSAMQGNRRVIFVVTGLQTARDRAEESERIV 266


>gi|291536082|emb|CBL09194.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis M50/1]
          Length = 348

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 131/249 (52%), Gaps = 10/249 (4%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           E R+PAS+TK+MTL +IF+ L SK++ L+  + VS+ AA+   S+++L+     T E  I
Sbjct: 16  EARHPASVTKIMTLLLIFDALSSKQISLDDTVTVSEYAASMGGSQVFLEPGETQTVETMI 75

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             +   SAND   A  E ++GSE +F  +M+ +AK +GM +T + N  GL     +T+A 
Sbjct: 76  KCISVASANDACVAMAEHVAGSESEFVRMMNERAKGLGMNDTNFVNCCGLDADGHMTSAN 135

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRI--------ITNHNKLLNKMHNIDGIKTGY 244
           D A++   L   +P+ + Y +I      +          +TN NKL+       G+KTG+
Sbjct: 136 DIALMSRELITKYPKIHDYCTIWMENITHTTAKGSSEFGLTNTNKLIKHYQYATGLKTGF 195

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNL 304
           T  + + I  + +  D  ++AV+MG P  + R   A  L+     K  + +  +H +D L
Sbjct: 196 TNTAMYCISATAKKDDMELIAVIMGAPDIKSRSADATTLLNYGFGKCRI-YCDSH-EDKL 253

Query: 305 SSTSLKKSL 313
               ++K L
Sbjct: 254 DDLPVEKGL 262


>gi|251790547|ref|YP_003005268.1| D-alanyl-D-alanine carboxypeptidase fraction A [Dickeya zeae
           Ech1591]
 gi|247539168|gb|ACT07789.1| Beta-lactamase [Dickeya zeae Ech1591]
          Length = 403

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/256 (33%), Positives = 141/256 (55%), Gaps = 17/256 (6%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   + I+ID N  ++   K  D  R PASLTKMMT Y+I + +++ K+ 
Sbjct: 37  MIPAVPDIDAE---AYILIDYNSGKVLAEKNADTRRNPASLTKMMTSYVIGQAIKAGKIT 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKT---YFTTEQGILALITRSANDVSTAFGEF 150
            N  + + K A AT NP     S ++LK       +   +GI   I +S ND   A  ++
Sbjct: 94  PNDVVTIGKDAWATGNPDFQGSSLMFLKPGDRVPVYLLNKGI---ILQSGNDACVAMADY 150

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           ++GS+  F  LM+   K +G+QNT +K   GL  + Q ++ARD A++G  L ++ P  Y 
Sbjct: 151 VAGSQDAFVNLMNGYVKALGLQNTNFKTVHGLDAEGQFSSARDMALIGQALIRDVPDEYA 210

Query: 211 YFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            +  ++F + N    N N LL +    +DGIKTG+T ++G+N+V S       +++ VMG
Sbjct: 211 TYKEKEFTFNNIRQMNRNGLLWDSSLAVDGIKTGHTASAGYNLVASATEGQVRLISAVMG 270

Query: 270 MPTSQERDQKALELIT 285
             T + R+ ++ +L+T
Sbjct: 271 GRTFKGREAESKKLLT 286


>gi|90414079|ref|ZP_01222062.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
           profundum 3TCK]
 gi|90324874|gb|EAS41402.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
           profundum 3TCK]
          Length = 391

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 131/233 (56%), Gaps = 5/233 (2%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           I++D N  ++      DE  +PASLTKM+T Y+I + ++S  + L+ ++ VS  A  +N 
Sbjct: 42  ILMDYNSGKIIAENNSDERLHPASLTKMLTSYVIGQEIKSGNISLDDKVSVSNNAWAKNF 101

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L+     T ++    +I +S ND  TA  E I+GS   F  LM+  AK+IGM+
Sbjct: 102 PGSSKMFLEPGKLVTVQELNKGIIIQSGNDACTAMAEHIAGSTDSFVELMNAWAKRIGME 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           ++ + N  GL + +  +TA D A L   + ++ P  Y  +  + F Y      N N LL 
Sbjct: 162 SSHFVNVHGLDNDDHFSTAHDMATLAQAVIRDVPDEYAIYKEKSFTYNGITQYNRNGLLW 221

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +K  N+DG+KTG+T  +G+++V S    +  +++VVMG  ++  R  ++ +L+
Sbjct: 222 DKSLNVDGMKTGHTDQAGYSLVASAYEGEMRLISVVMGTKSANARKAESKKLL 274


>gi|319785898|ref|YP_004145373.1| beta-lactamase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464410|gb|ADV26142.1| Beta-lactamase [Pseudoxanthomonas suwonensis 11-1]
          Length = 407

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 135/250 (54%), Gaps = 11/250 (4%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V+D    Q + G   DE   PAS+TK+MT Y+I   + + ++  + Q+ +S+ A  +  
Sbjct: 59  LVMDYATGQVLAGENVDEQVEPASITKVMTSYVIAAEMAAGRVKPDDQVLMSERAWREGG 118

Query: 116 SKLYLKEKTYFTTEQGIL-----ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           ++       +   +   L      +  +S ND + A  E ++G+++ FA LM++ A KIG
Sbjct: 119 ARTDGSFSGFPVNQTAPLVEMEKGMAVQSGNDAAIALAEHVAGTQEAFADLMNSYAAKIG 178

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+N+ + NA GL  +   +TARD A+LG    +++P+ Y Y  I++F        N N L
Sbjct: 179 MKNSHFVNAHGLSAEGHYSTARDLALLGRAFVRDYPEQYGYNKIKEFTVNGITQPNRNLL 238

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L +  ++DGIKTG+   +G+ +++S +  D  +VAV+MG  + ++R   +L L+      
Sbjct: 239 LWRDSSVDGIKTGHHSKAGYCLMSSAQRGDQRLVAVLMGGASERQRADDSLALLN----- 293

Query: 291 KTLKHQQTHR 300
              +  +THR
Sbjct: 294 WGFRFHETHR 303


>gi|157370876|ref|YP_001478865.1| D-alanyl-D-alanine carboxypeptidase [Serratia proteamaculans 568]
 gi|157322640|gb|ABV41737.1| Serine-type D-Ala-D-Ala carboxypeptidase [Serratia proteamaculans
           568]
          Length = 389

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 121/224 (54%), Gaps = 7/224 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-NP-----SKLYLKEKTY 125
           D+ R PASLTK+MT  +I   L   K+ L+  + V K A  Q NP     S ++LK    
Sbjct: 57  DQRRNPASLTKLMTGLVIDHALDQHKIGLDDVVTVGKDAWAQGNPVFKGSSLMFLKPGDR 116

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            T       +I  S ND   A  ++++GS+  F  LM+ K+ ++G+QNT ++   GL   
Sbjct: 117 VTVRDLSRGIIIDSGNDACVAMADYVAGSQAAFVKLMNEKSAQLGLQNTHFETVHGLDAP 176

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGY 244
            Q TTA D A++   +  + P  Y  +S +   +      N N LL +K   +DG+KTG+
Sbjct: 177 GQFTTAGDLAVISRAIIMSEPAEYHMYSEKSLTWNGITQQNRNGLLWDKNLRVDGLKTGH 236

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           T ++GFNI+ S    D  ++AVVMG  + + R+++A +L+T  L
Sbjct: 237 TESAGFNIIASATEGDRRLIAVVMGGKSPKGREEQARKLLTWGL 280


>gi|86136162|ref|ZP_01054741.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. MED193]
 gi|85827036|gb|EAQ47232.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. MED193]
          Length = 391

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 124/236 (52%), Gaps = 6/236 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++ V+D   + +   K  E P  PAS++K+MTLY+ FE L+  +L L+ ++PVS  A + 
Sbjct: 32  AAFVLDQGTDTVLLSKNAEVPLPPASMSKLMTLYVAFEALRDGRLSLDERLPVSAHAMSY 91

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKIGM 171
             S ++L        E  +  +I  S ND      E +S  G+E  FA  M+ +A ++GM
Sbjct: 92  GGSTMFLDTTDRVRVEDLLRGIIVLSGNDACAVIAEALSPDGTEAGFARYMTKRAHELGM 151

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT---NHN 228
            N  + N++G        + RD  +L   L ++FPQYY  FS + F +  R  +   N N
Sbjct: 152 MNASFANSNGWPAIGHRMSMRDLGVLAEHLIEDFPQYYPLFSEKSFAFDGRAPSNTRNRN 211

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            LL      DG+KTG+T  +G+ +V S    D  ++ VV G+ +++ R ++A  ++
Sbjct: 212 PLLGLGIGADGLKTGHTSEAGYGLVGSAVQGDRRVIFVVTGLESNKARAEEAEAIV 267


>gi|269965477|ref|ZP_06179596.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B]
 gi|269829956|gb|EEZ84186.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B]
          Length = 392

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/213 (35%), Positives = 117/213 (54%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I + L    +  +  + +SK A  +N    SK++++  T         
Sbjct: 65  PASLTKMMTSYVIGQELARGNISEDDDVTISKNAWAKNFPDSSKMFIEVGTTVKVRDLNR 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E I+GSE  F  LM+  A  +GM N+ + N  GL +    +T  D
Sbjct: 125 GIIVQSGNDACVAMAEHIAGSEDAFVDLMNAWANTLGMTNSHFANVHGLDNAELYSTPYD 184

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A+LG  L ++ P  Y+ +S +KF Y      N N LL +K  N+DGIKTG+T N+G+++
Sbjct: 185 MALLGKALIRDVPNEYRVYSEKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSL 244

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           V+S       +VAVVMG   +  R  ++ +L++
Sbjct: 245 VSSATEGQMRLVAVVMGTKDANARKSESKKLLS 277


>gi|257453878|ref|ZP_05619156.1| D-alanyl-D-alanine carboxypeptidase DacC [Enhydrobacter aerosaccus
           SK60]
 gi|257448805|gb|EEV23770.1| D-alanyl-D-alanine carboxypeptidase DacC [Enhydrobacter aerosaccus
           SK60]
          Length = 395

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 117/215 (54%), Gaps = 3/215 (1%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI---PVSKTAATQNPSKLYLKEKTYFTTE 129
           +P  PASLTKMMT YII + L S  L  N  I   P +    +   S +Y+   T     
Sbjct: 65  QPFPPASLTKMMTSYIIEQRLLSGALKENEPILMTPEAWCKGSSEESCMYVPVNTTAPVI 124

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
             +  +I +S ND S A  + I GSE  FA LM+ +AKKIGM +T + NA+G+  +    
Sbjct: 125 DMLKGIIIQSGNDASKAMAQHIGGSETTFADLMNEEAKKIGMTHTHFMNATGMPQEGHQA 184

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
           +A D A L   + KN  +YY  +S ++F Y      N N LL     +DG+KTG+T  +G
Sbjct: 185 SAEDLAKLAQAIIKNSKKYYPIYSQKQFTYNGITQGNRNALLFTDPTVDGLKTGHTDEAG 244

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           + +V S +  D  +++V+MG  ++QER  ++  L+
Sbjct: 245 YCLVASSKRGDMRLISVIMGTKSAQERADQSRNLL 279


>gi|54309028|ref|YP_130048.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
           profundum SS9]
 gi|46913460|emb|CAG20246.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
           profundum SS9]
          Length = 404

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/212 (34%), Positives = 123/212 (58%), Gaps = 4/212 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + ++   +  +  + +S+ A  +N    SK++++  T  +      
Sbjct: 76  PASLTKLMTSYVAGQEMKRGNISQDDIVVISRNAWARNFSDSSKMFIEVGTEVSMMDLYR 135

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GS+  F  LM++ AK +GM N+ + NA GL + N  +T  D
Sbjct: 136 GLIIQSGNDASVAIAEHVAGSQDAFVGLMNSWAKNLGMNNSQFANAHGLDNPNLYSTPYD 195

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A+LG  L K+ P  Y  +S R F Y N    N N LL +K  N+DG+KTGYT  +G+++
Sbjct: 196 IALLGQALIKDLPDLYPLYSERSFTYNNITQRNRNGLLGDKSINVDGMKTGYTSGAGYSL 255

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +S    +  +++VVMG  +++ R+ ++ +L+
Sbjct: 256 ASSATQGNMRLISVVMGSSSTKSREAESKQLL 287


>gi|307130041|ref|YP_003882057.1| D-alanyl-D-alanine carboxypeptidase [Dickeya dadantii 3937]
 gi|306527570|gb|ADM97500.1| D-alanyl-D-alanine carboxypeptidase [Dickeya dadantii 3937]
          Length = 403

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/256 (33%), Positives = 140/256 (54%), Gaps = 17/256 (6%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   + I+ID N  ++   K  D  R PASLTKMMT Y+I + ++S K+ 
Sbjct: 37  MIPAVPDIDAE---AYILIDYNSGKVLAEKNADARRNPASLTKMMTSYVIGQAIKSGKIS 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKT---YFTTEQGILALITRSANDVSTAFGEF 150
            N  + + K A AT NP     S ++LK       +   +GI   I +S ND   A  ++
Sbjct: 94  PNDVVTIGKDAWATGNPDFQGSSLMFLKPGDRVPVYLLNKGI---ILQSGNDACVAMADY 150

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           ++GS+  F  LM+   K +G+QNT +K   GL    Q ++ARD A++G  L ++ P  Y 
Sbjct: 151 VAGSQDSFVNLMNGYVKALGLQNTNFKTVHGLDADGQYSSARDMALIGQALIRDVPDEYA 210

Query: 211 YFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            +  ++F + N    N N LL +    +DGIKTG+T ++G+N+V S       +++ VMG
Sbjct: 211 TYKEKEFTFNNIRQMNRNGLLWDSSLAVDGIKTGHTASAGYNLVASATEGQMRLISAVMG 270

Query: 270 MPTSQERDQKALELIT 285
             T + R+ ++ +L+T
Sbjct: 271 GRTFKGRETESKKLLT 286


>gi|256021090|ref|ZP_05434955.1| D-alanyl-D-alanine carboxypeptidase fraction C [Shigella sp. D9]
          Length = 400

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 59  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 119 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLINTTFQTVHGLDAP 178

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 179 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 233

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 234 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279


>gi|170768996|ref|ZP_02903449.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii
           TW07627]
 gi|170122068|gb|EDS90999.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii
           TW07627]
          Length = 403

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 126/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + + K A AT NP     S ++LK    
Sbjct: 62  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTIGKDAWATGNPALRGSSVMFLKPGDQ 121

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 122 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 181

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 182 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 236

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 237 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 282


>gi|152984820|ref|YP_001346496.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa PA7]
 gi|150959978|gb|ABR82003.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa PA7]
          Length = 386

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 147/269 (54%), Gaps = 10/269 (3%)

Query: 27  NIQLMGKILFLSIIMIS----MASE--LHAKPKYSS---IVIDVNKNQMTGFKQDEPRYP 77
           NI  + K L L ++ I+     A+E  + A P+ ++   +++D    Q+      + R P
Sbjct: 2   NITTIAKRLSLLVLFIAPTAGWAAESMVPAPPQLAAKSYVLMDGESGQVLVENNGDQRLP 61

Query: 78  -ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            ASLTK+MT YI  + +++ ++  N  + VS+ A     S++++K  +  +    +  +I
Sbjct: 62  PASLTKLMTAYIATKEIEAGRIGENDLVTVSEHAWRTGGSRMFIKVGSQVSVSDLLHGII 121

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E I+GSE  FA +M+  A+K+G+ N+ + +A+GL + +  ++ARD A+
Sbjct: 122 IQSGNDASVALAEHIAGSEDAFADMMNTTAQKLGLTNSHFMDATGLPNPDHYSSARDMAV 181

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   +    P +Y  ++ ++F + N    N N LL +   +DG+KTG+T  +G+ +V S 
Sbjct: 182 LARAIIYGEPSHYAIYAQKEFLWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCLVASA 241

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELIT 285
                 ++AVV G  + Q R  +  +L+T
Sbjct: 242 VRDGQRMIAVVFGTNSEQARAAETQKLLT 270


>gi|254293994|ref|YP_003060017.1| serine-type D-Ala-D-Ala carboxypeptidase [Hirschia baltica ATCC
           49814]
 gi|254042525|gb|ACT59320.1| Serine-type D-Ala-D-Ala carboxypeptidase [Hirschia baltica ATCC
           49814]
          Length = 380

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 128/232 (55%), Gaps = 6/232 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYF 126
           D P  PAS+TK+MT YI+FE ++  +L L  +  VS+TA     A    S ++L+  +  
Sbjct: 51  DTPFIPASMTKIMTAYIVFERIRDGRLTLEDEFVVSETAWREGGAASGGSTMFLELGSKV 110

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           +    +  +I +S ND      E ISGS++ FA  M+ +A+++G+ +  ++N +GL+  N
Sbjct: 111 SVRDLLRGVIIQSGNDACIVIAEAISGSQEAFAEEMTRRARELGLDSATFENPTGLYSDN 170

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
              +A D A L  L  K+FP++Y  +S ++F +      N N LL ++   DG+KTG+  
Sbjct: 171 HRISAADLAQLAYLTIKDFPEFYALYSEKEFTWNGIRQPNRNPLLGEVQGADGLKTGHLE 230

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI-TSFLEKKTLKHQQ 297
            SG+ +V S        + V+ G+ +  ER  +A  ++ ++F++ K ++  Q
Sbjct: 231 ISGYGLVGSAVRDGKRRIIVLNGLDSIAERASEARRVMRSAFVDFKVVEVVQ 282


>gi|238795791|ref|ZP_04639304.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia mollaretii ATCC
           43969]
 gi|238720254|gb|EEQ12057.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia mollaretii ATCC
           43969]
          Length = 424

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/239 (33%), Positives = 134/239 (56%), Gaps = 12/239 (5%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           +++D N  + +     D+   PASLTK+M+ Y+I + +++ K+H +  + V K A AT N
Sbjct: 67  VLMDFNSGKVLVEGNSDQRLDPASLTKIMSSYVIGQAIKAGKVHPDDLVTVGKDAWATGN 126

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S ++LK             ++ +S ND S A  ++++GS+  F  LM+N AK +
Sbjct: 127 PALRGSSLMFLKPGDQVKLSDLNKGIVIQSGNDASIALADYVAGSQDSFVGLMNNYAKAL 186

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+ NT +    GL    Q +TARD A+LG  L ++ P+ Y     ++F + N    N N+
Sbjct: 187 GLTNTHFMTVHGLDAPGQYSTARDMAVLGQALIRDVPEEYALHKEKEFTFNNIRQINRNR 246

Query: 230 LLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDP--IVAVVMGMPTSQERDQKALELIT 285
           LL   + N+DG+KTG+T  +G N+V S    D P  +++VV+G P+ + R  ++ +L+T
Sbjct: 247 LLWSTNLNVDGMKTGFTTGAGHNLVASA--TDGPMRLISVVLGAPSDRVRFSESEKLLT 303


>gi|294666894|ref|ZP_06732125.1| penicillin-binding protein 6 [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603342|gb|EFF46762.1| penicillin-binding protein 6 [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 401

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 129/225 (57%), Gaps = 8/225 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL--- 133
           PAS+TK+MT Y++   +++ K+  + Q+ +S+ A  +  +        +   +   L   
Sbjct: 74  PASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWREGGAGTDGSYSGFPVNQTARLEDM 133

Query: 134 --ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
              +  +S ND + A  E ++GSE+ FA LM++ A KIGM+++ + NA GL  +   +TA
Sbjct: 134 EKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKIGMKDSYFVNAHGLSAEGHHSTA 193

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            D A+LG  + +++P+ Y Y  I++F+  N   +N N+LL +   +DGIKTG+T  +G+ 
Sbjct: 194 YDLAMLGRAMVRDYPETYAYNKIKEFQVGNIKQSNRNRLLWRAPAVDGIKTGHTSEAGYC 253

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTL 293
           +++S +  D  ++AVVMG  + ++R   +L L+     F E  +L
Sbjct: 254 LLSSAKRGDQRLIAVVMGDNSEEQRATDSLALLNWGFRFFETHSL 298


>gi|20807763|ref|NP_622934.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516318|gb|AAM24538.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 377

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/205 (35%), Positives = 118/205 (57%), Gaps = 3/205 (1%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           P  PAS+TK+MTL +  E + S K+ +  ++  SK A     +++YL+     T +  + 
Sbjct: 50  PLPPASVTKVMTLLLAIEAIDSGKIKVTDKVVTSKHAFDMGGTQIYLEVGEEMTVDDLMK 109

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           A+   SAND S A  E+I+G+E+ F  +M+ +AK++G +NT +KNA+GL ++  +TT  D
Sbjct: 110 AIAMNSANDASVALAEYIAGTEENFVEMMNKRAKELGAKNTTFKNATGLPEEGHLTTVYD 169

Query: 194 QAILGILLRKNFPQYYKYFS--IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            A++   L K+ P  +KY +  I   R     + N NKLL +   +DGIKTG T  + + 
Sbjct: 170 IAMISRELVKH-PSIFKYLTNKIDSLRNGKFSLINTNKLLWRYKGVDGIKTGSTSEALYC 228

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQER 276
           +  + +  D  ++AVV G P S+ R
Sbjct: 229 MAATAKRGDTRLIAVVFGAPDSETR 253


>gi|169333947|ref|ZP_02861140.1| hypothetical protein ANASTE_00333 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259512|gb|EDS73478.1| hypothetical protein ANASTE_00333 [Anaerofustis stercorihominis DSM
           17244]
          Length = 392

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 142/238 (59%), Gaps = 9/238 (3%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S +++DV   ++   K  + + P AS+TK+MT+ +I E + +K ++++  + +S  A+  
Sbjct: 40  SVVLMDVGTGKVLYEKNKDEKLPLASVTKVMTILLILEAVNNKTINMSDMVTISDYASKM 99

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+L+++E    + ++ + A+I  SAND   A GEF+ GS +KF ++M+++AK++GM+N
Sbjct: 100 GGSQLFMEEGEMRSVDELLNAIIIESANDACAAMGEFVGGSIEKFVLMMNDRAKELGMKN 159

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-------IRKFRYRNRIITN 226
           + + N++GL   +  ++A D A++   + K +P  +K  S       I K   + R ++N
Sbjct: 160 SHFVNSNGLPADDHYSSAYDIALMTKEVCK-YPDIFKISSTWQKTIKIGKKNDKERTLSN 218

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            NKLL     +DG+KTGYT ++G  I  + +  D  ++AV++  P S+ R  +A +L+
Sbjct: 219 TNKLLRMNDKVDGLKTGYTADAGHCISATGKEGDLRLIAVILHAPDSKTRFAEANKLL 276


>gi|107103514|ref|ZP_01367432.1| hypothetical protein PaerPA_01004584 [Pseudomonas aeruginosa PACS2]
          Length = 359

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 4/246 (1%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLH 99
           M+    +L AK   S +++D    Q+      + R P ASLTK+MT YI  + +++ ++ 
Sbjct: 1   MVPAPPQLAAK---SYVLMDGESGQVLVENNGDQRLPPASLTKLMTAYIATKEIEAGRIG 57

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            N  + VS+ A     S++++K  +  +    +  +I +S ND S A  E I+GSE  FA
Sbjct: 58  ENDLVTVSEHAWRTGGSRMFIKVGSQVSVSDLLHGIIIQSGNDASVALAEHIAGSEDAFA 117

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+  A+K+G+ N+ + +A+GL + +  ++ARD A+L   +    P +Y  ++ ++F +
Sbjct: 118 DMMNTTAQKLGLTNSHFMDATGLPNPDHYSSARDMAVLARAIIYGEPSHYAIYAQKEFLW 177

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            N    N N LL +   +DG+KTG+T  +G+ +V S       ++AVV G  + Q R  +
Sbjct: 178 NNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCLVASAVRDGQRMIAVVFGTNSEQARAAE 237

Query: 280 ALELIT 285
             +L+T
Sbjct: 238 TQKLLT 243


>gi|262164351|ref|ZP_06032089.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM223]
 gi|262026731|gb|EEY45398.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM223]
          Length = 389

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 123/215 (57%), Gaps = 8/215 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + ++   +H   Q+ +S  A  +   + SK++++  +Y        
Sbjct: 62  PASLTKLMTAYVAGQEMKRGNIHAEDQVRISNNAWAKKFPDSSKMFIEVGSYVNLMDLYR 121

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL D N  +T  D
Sbjct: 122 GLIVQSGNDASVAIAEHVAGSESAFVSLMNSWAQQLGMNNSSFANPHGLDDSNLYSTPYD 181

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK---LLNKMHNIDGIKTGYTRNSGF 250
            A+LG  + ++ P  Y  +S   F Y    IT HN+   L ++  N+DG+KTGYT  +G+
Sbjct: 182 IALLGQAIIRDLPDIYPLYSELSFTYNG--ITQHNRNGLLRDRSMNVDGMKTGYTSGAGY 239

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           ++ +S    +  +++VVMG  + + R+ ++ +L++
Sbjct: 240 SLASSATSGEMRLISVVMGSKSVKIREAESKQLLS 274


>gi|15599194|ref|NP_252688.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa PAO1]
 gi|116052037|ref|YP_789120.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218889720|ref|YP_002438584.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa LESB58]
 gi|254236891|ref|ZP_04930214.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa C3719]
 gi|254242683|ref|ZP_04936005.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa 2192]
 gi|296387449|ref|ZP_06876948.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas aeruginosa PAb1]
 gi|313109439|ref|ZP_07795399.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa 39016]
 gi|4887207|gb|AAD32234.1|AF147448_5 penicillin-binding protein 5 [Pseudomonas aeruginosa PAO1]
 gi|9950191|gb|AAG07386.1|AE004817_10 D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa PAO1]
 gi|115587258|gb|ABJ13273.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168822|gb|EAZ54333.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa C3719]
 gi|126196061|gb|EAZ60124.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa 2192]
 gi|218769943|emb|CAW25704.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa LESB58]
 gi|310881901|gb|EFQ40495.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa 39016]
          Length = 386

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 147/269 (54%), Gaps = 10/269 (3%)

Query: 27  NIQLMGKILFLSIIMIS----MASE--LHAKPKYSS---IVIDVNKNQMTGFKQDEPRYP 77
           NI  + K L L ++ I+     A+E  + A P+ ++   +++D    Q+      + R P
Sbjct: 2   NITTIAKRLSLLVLFIAPTAGWAAESMVPAPPQLAAKSYVLMDGESGQVLVENNGDQRLP 61

Query: 78  -ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            ASLTK+MT YI  + +++ ++  N  + VS+ A     S++++K  +  +    +  +I
Sbjct: 62  PASLTKLMTAYIATKEIEAGRIGENDLVTVSEHAWRTGGSRMFIKVGSQVSVSDLLHGII 121

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E I+GSE  FA +M+  A+K+G+ N+ + +A+GL + +  ++ARD A+
Sbjct: 122 IQSGNDASVALAEHIAGSEDAFADMMNTTAQKLGLTNSHFMDATGLPNPDHYSSARDMAV 181

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   +    P +Y  ++ ++F + N    N N LL +   +DG+KTG+T  +G+ +V S 
Sbjct: 182 LARAIIYGEPSHYAIYAQKEFLWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCLVASA 241

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELIT 285
                 ++AVV G  + Q R  +  +L+T
Sbjct: 242 VRDGQRMIAVVFGTNSEQARAAETQKLLT 270


>gi|238751821|ref|ZP_04613308.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia rohdei ATCC
           43380]
 gi|238709950|gb|EEQ02181.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia rohdei ATCC
           43380]
          Length = 401

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 134/239 (56%), Gaps = 12/239 (5%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           +++D N  + +T    D+   PASLTK+M+ Y+I + +++ K+H +  + V K A AT N
Sbjct: 44  VLMDYNSGKVLTEGNSDQRLDPASLTKIMSSYVIGQAIKAGKVHPDDLVTVGKDAWATGN 103

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S ++LK             ++ +S ND S A  ++I+GS+  F  LM+N AK +
Sbjct: 104 PALRGSSLMFLKPGDQVKLSDLNKGIVIQSGNDASIALADYIAGSQDSFVGLMNNYAKAL 163

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+ NT +    GL    Q +TARD A+LG  L ++ P+ Y     ++F +      N N+
Sbjct: 164 GLDNTHFMTVHGLDAPGQYSTARDMAVLGQALIRDVPEEYALHKEKEFTFNKIRQINRNR 223

Query: 230 LLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDP--IVAVVMGMPTSQERDQKALELIT 285
           LL   + N+DG+KTG+T  +G N+V S    D P  +++VV+G P+ + R  ++ +L+T
Sbjct: 224 LLWSTNINVDGMKTGFTTGAGHNLVASA--TDGPMRLISVVLGAPSDRVRFSESEKLLT 280


>gi|294627617|ref|ZP_06706199.1| penicillin-binding protein 6 [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292597969|gb|EFF42124.1| penicillin-binding protein 6 [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 401

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 129/225 (57%), Gaps = 8/225 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL--- 133
           PAS+TK+MT Y++   +++ K+  + Q+ +S+ A  +  +        +   +   L   
Sbjct: 74  PASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWREGGAGTDGSYSGFPVNQTARLEDM 133

Query: 134 --ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
              +  +S ND + A  E ++GSE+ FA LM++ A KIGM+++ + NA GL  +   +TA
Sbjct: 134 EKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKIGMKDSYFVNAHGLSAEGHHSTA 193

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            D A+LG  + +++P+ Y Y  I++F+  N   +N N+LL +   +DGIKTG+T  +G+ 
Sbjct: 194 YDLAMLGRAMVRDYPETYAYNKIKEFQVGNIKQSNRNRLLWRDPAVDGIKTGHTSEAGYC 253

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTL 293
           +++S +  D  ++AVVMG  + ++R   +L L+     F E  +L
Sbjct: 254 LLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNWGFRFFETHSL 298


>gi|260575562|ref|ZP_05843560.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sp. SW2]
 gi|259022205|gb|EEW25503.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sp. SW2]
          Length = 385

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGIL 133
           PAS++K+MT+ ++FE L+  ++ ++T   VS  A        S ++L+E    T EQ I 
Sbjct: 49  PASMSKLMTINMLFEALRDGRVAMDTTFAVSTRAKGMTALGGSTMFLQETDRPTVEQLIH 108

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I  S ND      E ++GSE+ FA  MS +A+ +GM N+ + NASG+ D +   +  D
Sbjct: 109 GMIINSGNDACVVVAEGLAGSEEAFAEQMSQRAQALGMTNSHFANASGMPDPSHRMSMHD 168

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIIT---NHNKLLNKMHNIDGIKTGYTRNSGF 250
             +L   L + FP+YY  F+  ++ Y +R +    N N LL      DG+KTG+T  +G+
Sbjct: 169 LGLLATRLIEEFPEYYPVFAETEYNYADRAVENRFNRNPLLKLNIGADGLKTGHTTEAGY 228

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
            +V S    +  IV  + G+P+   R +++  ++     +  LK
Sbjct: 229 GLVGSAVQGNRRIVFAITGLPSETARAEESERIVNWAFRQFALK 272


>gi|71898423|ref|ZP_00680595.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Ann-1]
 gi|71731736|gb|EAO33795.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Ann-1]
          Length = 347

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 131/228 (57%), Gaps = 14/228 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA------ATQNPSKLYLKEKT--YFTT 128
           PASLTK+MT Y+I   +++ K+H + Q+ +++ A       T      +   KT      
Sbjct: 20  PASLTKVMTSYVIAAEIKNGKVHRDDQVMMTENAWRKGGAGTDGSYSGFPVNKTARLEDM 79

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           EQG   +I +S ND + A  + ++GSE+ FA LM++ A++IGM+N+ + +A+GL  +   
Sbjct: 80  EQG---MIVQSGNDAAIALAQHVAGSEEAFASLMNSYAQRIGMKNSHFVDATGLSAEGHY 136

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
           ++A D A+LG  L ++FP+ Y Y  +++        +N N LL +  ++DGIKTG+T  +
Sbjct: 137 SSAYDMALLGRALIRDFPETYAYNKVKELVVNGIKQSNRNLLLWRDPSVDGIKTGHTSEA 196

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTL 293
           G+ I+ S +  D  I+ VVMG  + ++R + +L L+     F E  TL
Sbjct: 197 GYCIINSAKRGDQRILTVVMGDVSEKKRAEDSLALLNWGFRFFETHTL 244


>gi|332282314|ref|ZP_08394727.1| penicillin-binding protein 6 [Shigella sp. D9]
 gi|332104666|gb|EGJ08012.1| penicillin-binding protein 6 [Shigella sp. D9]
          Length = 407

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 66  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 125

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 126 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLINTTFQTVHGLDAP 185

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 186 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 240

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 241 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 286


>gi|238762884|ref|ZP_04623852.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia kristensenii
           ATCC 33638]
 gi|238698895|gb|EEP91644.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia kristensenii
           ATCC 33638]
          Length = 403

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 137/253 (54%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   + ++ID N  ++      D  R PASLTKMMT Y+I + +++ K+ 
Sbjct: 37  MIPGVPQIDAE---AYVLIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGKIG 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V K A AT NP     S ++LK        +    +  +S ND   A  ++++G
Sbjct: 94  PEDMVTVGKDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+N  K +G+QNT +K   GL  + Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDSFVNLMNNYVKALGLQNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAIYK 213

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F + N    N N LL +   N+DGIKTG+T  +G+N+V S       +++ V+G  T
Sbjct: 214 EKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTEAAGYNLVASATDGQMRLISAVLGGHT 273

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 274 YKGRETESKKLLT 286


>gi|238791637|ref|ZP_04635275.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia intermedia ATCC
           29909]
 gi|238729253|gb|EEQ20769.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia intermedia ATCC
           29909]
          Length = 403

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 130/237 (54%), Gaps = 8/237 (3%)

Query: 57  IVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           ++ID N  ++      D  R PASLTKMMT Y+I + +++ K+     + V K A AT N
Sbjct: 50  VLIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGKIGPEDMVTVGKDAWATGN 109

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S ++LK        +    +  +S ND   A  ++++GS+  F  LM+N  K +
Sbjct: 110 PEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNLMNNYVKAL 169

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+QNT +K   GL  + Q ++ARD A++G  L ++ P  Y  +  ++F + N    N N 
Sbjct: 170 GLQNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQMNRNG 229

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL +   N+DGIKTG+T  +G+N+V S       +++ V+G  T + R+ ++ +L+T
Sbjct: 230 LLWDTSLNVDGIKTGHTEAAGYNLVASATDGQMRLISAVLGGHTYKGRETESKKLLT 286


>gi|126175479|ref|YP_001051628.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS155]
 gi|125998684|gb|ABN62759.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Shewanella baltica OS155]
          Length = 391

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/237 (33%), Positives = 137/237 (57%), Gaps = 11/237 (4%)

Query: 57  IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           +++D N  Q+       E   PASLTKMMT Y+I + +++  + ++  + +SK A ++N 
Sbjct: 42  VLMDYNSGQIIAESNAYESLNPASLTKMMTSYVIGQEIKAGNVSVDDDVTISKNAWSKNF 101

Query: 115 --PSKLYLKEKTYFTTEQGIL--ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
              SK++++  T  T + G L   +I +S ND   A  E I+G+E  F  +M++ AK++G
Sbjct: 102 SDSSKMFIEVGT--TVKVGDLNRGIIIQSGNDACVAMAEHIAGTEGAFVDMMNSWAKQLG 159

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ ++NA GL  +N  +TA D A+LG  L ++ P  Y  +S + + +      N N L
Sbjct: 160 MRDSYFENAHGLDAENHKSTAYDMALLGAALIRDEPDEYHIYSEKFYTFNGIKQYNRNGL 219

Query: 231 L--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           L  N M N+DGIKTG+T  +G+N+V S       +++VVMG  +   R  ++ +L+T
Sbjct: 220 LWDNSM-NVDGIKTGHTSGAGYNLVASATKDGMRLISVVMGTQSESARKAESKKLLT 275


>gi|284800030|ref|ZP_05985503.2| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria subflava
           NJ9703]
 gi|284796183|gb|EFC51530.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria subflava
           NJ9703]
          Length = 405

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 129/235 (54%), Gaps = 2/235 (0%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           IV D++  Q +     D P  PA+LT+MMT Y+ F+ L++  L  +  + VS  A     
Sbjct: 59  IVTDLHSKQTLASNNADAPIEPAALTQMMTAYLAFKALENGTLEASQMLTVSNAAWKVEG 118

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNT 174
           S+++L  K   +    I     +SAND +    E I  GS  +F   M+ +AK++GM++T
Sbjct: 119 SRMFLDPKVPVSVSSLIKGTTIQSANDAAITLAEAIGNGSIDEFVKQMNEEAKRLGMKHT 178

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            + N +G+     ++T  D AIL   L  ++P+YY  F+ + F+Y N    N N LL + 
Sbjct: 179 HFNNPTGISSNGHVSTVGDLAILAAALINDYPKYYPLFANKSFKYNNIEQPNRNLLLYRD 238

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
            +IDG+KTGY+  +G+++  S +  +  IV+++ G  +++ R  ++ +L+   L+
Sbjct: 239 SSIDGLKTGYSEGAGYHLAASSKRNNRRIVSILAGAESTEARASESSKLLNWSLQ 293


>gi|28199163|ref|NP_779477.1| penicillin-binding protein 6 precursor [Xylella fastidiosa
           Temecula1]
 gi|182681894|ref|YP_001830054.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa M23]
 gi|28057261|gb|AAO29126.1| penicillin-binding protein 6 precursor [Xylella fastidiosa
           Temecula1]
 gi|182632004|gb|ACB92780.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa M23]
 gi|307578148|gb|ADN62117.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 396

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 131/228 (57%), Gaps = 14/228 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA------ATQNPSKLYLKEKT--YFTT 128
           PASLTK+MT Y+I   +++ K+H + Q+ +++ A       T      +   KT      
Sbjct: 69  PASLTKVMTSYVIAAEIKNGKVHRDDQVMMTENAWRKGGAGTDGSYSGFPVNKTARLEDM 128

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           EQG   +I +S ND + A  + ++GSE+ FA LM++ A++IGM+N+ + +A+GL  +   
Sbjct: 129 EQG---MIVQSGNDAAIALAQHVAGSEEAFASLMNSYAQRIGMKNSHFVDATGLSAEGHY 185

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
           ++A D A+LG  L ++FP+ Y Y  +++        +N N LL +  ++DGIKTG+T  +
Sbjct: 186 SSAYDMALLGRALIRDFPETYAYNKVKELVVNGIKQSNRNLLLWRDPSVDGIKTGHTSEA 245

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTL 293
           G+ I+ S +  D  I+ VVMG  + ++R + +L L+     F E  TL
Sbjct: 246 GYCIINSAKRGDQRILTVVMGDVSEKKRAEDSLALLNWGFRFFETHTL 293


>gi|238758038|ref|ZP_04619219.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia aldovae ATCC
           35236]
 gi|238703792|gb|EEP96328.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia aldovae ATCC
           35236]
          Length = 403

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 130/237 (54%), Gaps = 8/237 (3%)

Query: 57  IVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           ++ID N  ++      D  R PASLTKMMT Y+I + +++ K+     + V K A AT N
Sbjct: 50  VLIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGKIGPEDMVTVGKDAWATGN 109

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S ++LK        +    +  +S ND   A  ++++GS+  F  LM+N  K +
Sbjct: 110 PEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNLMNNYVKAL 169

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+QNT +K   GL  + Q ++ARD A++G  L ++ P  Y  +  ++F + N    N N 
Sbjct: 170 GLQNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQMNRNG 229

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL +   N+DGIKTG+T  +G+N+V S       +++ V+G  T + R+ ++ +L+T
Sbjct: 230 LLWDTSLNVDGIKTGHTEAAGYNLVASATDGQMRLISAVLGGHTYKGRETESKKLLT 286


>gi|296103221|ref|YP_003613367.1| D-alanyl-D-alanine carboxypeptidase fraction C [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295057680|gb|ADF62418.1| D-alanyl-D-alanine carboxypeptidase fraction C [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 404

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L+  + + K A AT NP     S ++LK    
Sbjct: 63  DEKLDPASLTKIMTSYVVGQALKAGKIKLDDMVTIGKDAWATGNPALRGSSVMFLKPGDQ 122

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS+  F  LM+  A+K+G+ NT +K   GL   
Sbjct: 123 VSVSDLNKGVIIQSGNDACIALADYVAGSQDSFIGLMNGYAQKLGLTNTTFKTVHGLDAP 182

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P  Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 183 GQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNVNVDG 237

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 238 MKTGTTAGAGYNLVASATQGDMRLISVVLGTKTDRIRFNESEKLLT 283


>gi|58698116|ref|ZP_00373039.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58535362|gb|EAL59438.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 310

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 110/201 (54%)

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MTLYI F+YL++  +H+  +  VS+ A  +  S ++LKE  + T  + +  +   S ND 
Sbjct: 1   MTLYIAFDYLKAGIIHMEDKFRVSRKAWERKGSSMFLKEGQFVTVRELLEGITIVSGNDA 60

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
                E I+GSE+ F   M+  A+ + + ++ + N+SG  D +   +A+D  +L   +  
Sbjct: 61  CITLAEGIAGSEENFVAEMNEVAQNLNLNDSHFVNSSGWPDGDHFMSAKDLVMLAKRIFT 120

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           +FP+YY  FS +   Y   +  N N LL     +DG+KTGYT   G+ IV S +  D  I
Sbjct: 121 DFPEYYDLFSEQYLTYNEIVQKNKNLLLFHDIGVDGLKTGYTNAGGYGIVASAKRNDRRI 180

Query: 264 VAVVMGMPTSQERDQKALELI 284
            AVV G+ T +ER ++A  LI
Sbjct: 181 FAVVNGLNTEKERIEEAKRLI 201


>gi|320186097|gb|EFW60841.1| D-alanyl-D-alanine carboxypeptidase [Shigella flexneri CDC 796-83]
          Length = 403

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 62  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 121

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 122 VSVADLNKDVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 181

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 182 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 236

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 237 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 282


>gi|319638282|ref|ZP_07993045.1| D-alanyl-D-alanine carboxypeptidase DacC [Neisseria mucosa C102]
 gi|317400555|gb|EFV81213.1| D-alanyl-D-alanine carboxypeptidase DacC [Neisseria mucosa C102]
          Length = 405

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 128/235 (54%), Gaps = 2/235 (0%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           IV D++  Q +     D P  PA+LT+MMT Y+ F+ L++  L     + VS  A     
Sbjct: 59  IVTDLHSKQTLASNNADAPIEPAALTQMMTAYLAFKALENGTLEAGQMLTVSNAAWKVEG 118

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNT 174
           S+++L  K   +    I     +SAND +    E I  GS  +F   M+ +AK++GM++T
Sbjct: 119 SRMFLDPKVPVSVSSLIKGTTIQSANDAAITLAEAIGNGSIDEFVKQMNEEAKRLGMKHT 178

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            + N +G+     ++T  D AIL   L  ++P+YY  F+ + F+Y N    N N LL + 
Sbjct: 179 HFNNPTGISSNGHVSTVGDLAILAAALINDYPKYYPLFANKSFKYNNIEQPNRNLLLYRD 238

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
            +IDG+KTGY+  +G+++  S +  +  IV+++ G  +++ R  ++ +L+   L+
Sbjct: 239 SSIDGLKTGYSEGAGYHLAASSKRNNRRIVSILAGAESTEARASESSKLLNWSLQ 293


>gi|317047508|ref|YP_004115156.1| beta-lactamase [Pantoea sp. At-9b]
 gi|316949125|gb|ADU68600.1| Beta-lactamase [Pantoea sp. At-9b]
          Length = 401

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 131/237 (55%), Gaps = 8/237 (3%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           +++D N  ++      + R  PASLTKMMT Y+I + L++ K+H +  + + + A AT N
Sbjct: 44  VLMDYNSGKVLAEANADQRLDPASLTKMMTSYVIGQALKAGKIHDDDMVTIGQDAWATGN 103

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S ++LK        +    ++ +S ND   A  ++++GS+  F  LM+N AK  
Sbjct: 104 PKLKGSSLMFLKPGDRIPVAELNKGIVIQSGNDACIAMADYVAGSQDSFIGLMNNYAKAF 163

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+QNT +    GL    Q +TARD AI+G  L  + P+ Y     ++F + N    N N+
Sbjct: 164 GLQNTHFMTVHGLDADGQYSTARDMAIIGQRLISDVPEEYALNKQKEFTFNNIKQMNRNR 223

Query: 230 LLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL   +  +DGIKTG+T  +G N+V+S    D  +++VV+G  T   R +++ +L+T
Sbjct: 224 LLWSSNLKVDGIKTGHTSGAGNNLVSSATDGDMRLISVVLGAETDALRFRESEKLLT 280


>gi|261377658|ref|ZP_05982231.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria cinerea ATCC
           14685]
 gi|269145924|gb|EEZ72342.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria cinerea ATCC
           14685]
          Length = 389

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 128/222 (57%), Gaps = 2/222 (0%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           IV D+   Q    K  + P  PA+LT++MT Y++F+ L+S  +     + + ++A   + 
Sbjct: 49  IVTDLQSKQTLSAKNINAPVEPAALTQLMTAYLVFKNLKSGNIRPEETLKIRESAWKSDG 108

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNT 174
           S+++++      T+  +  +I  SAND +    + +  GS + F   M+ +A+++GM++T
Sbjct: 109 SRMFVRPGNLIRTDDLLKGMIALSANDAALTLADKLGNGSIENFIKQMNEEARRLGMKDT 168

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
           ++KN +GL  + Q++TARD A+L   L  +FP+YY  FSI+ F+++N    N N LL + 
Sbjct: 169 LFKNPTGLSQERQVSTARDLALLSEALILDFPEYYPLFSIKSFKFKNIEQNNRNILLYRD 228

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
             ++G+K G+T + G+N+  S       I+ + +G  +++ R
Sbjct: 229 SGVNGLKAGHTESGGYNLAVSYTGNGRHILVITLGSESAEIR 270


>gi|300916310|ref|ZP_07133057.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           115-1]
 gi|300416399|gb|EFJ99709.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           115-1]
          Length = 407

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 66  DEKLDPASLTKIMTSYVVGQALKADKIKLTDIVTVGKDAWATGNPALRGSSVMFLKPGDQ 125

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 126 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 185

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 186 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 240

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 241 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 286


>gi|288936359|ref|YP_003440418.1| beta-lactamase [Klebsiella variicola At-22]
 gi|288891068|gb|ADC59386.1| Beta-lactamase [Klebsiella variicola At-22]
          Length = 403

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 142/271 (52%), Gaps = 11/271 (4%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLT 81
           R +     +LFL    +  A +L   P   +   I++D    + ++    DE   PASLT
Sbjct: 12  RGLAAGCALLFLIAPAVQAAEQLPDAPSIDARAWILMDYASGKVLSEGNADEKLDPASLT 71

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILAL 135
           K+MT Y++ + +++ K+ L   + V + A AT NP     S ++LK     + E     +
Sbjct: 72  KIMTSYVVGQAIKAGKIKLTDMVTVGRDAWATGNPALRGSSVMFLKPGMQVSVEDLNKGV 131

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I +S ND S A  ++++G++  F  LM+  AKK+G+ NT +    GL    Q +TARD A
Sbjct: 132 IIQSGNDASIAIADYVAGNQDAFVSLMNGYAKKMGLTNTTFMTVHGLDAPGQFSTARDMA 191

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVT 254
           +L   +  + P+ Y     ++F +      N N+LL   + N DG+KTG T  +G+N+V+
Sbjct: 192 LLTKAMIHDVPEEYAVHKEKEFTFNKIRQPNRNRLLWSTNLNADGVKTGTTAGAGYNLVS 251

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           S    D  ++AVV+G  T + R  ++ +L+T
Sbjct: 252 SATQGDMRLIAVVLGTKTDRIRFNESEKLLT 282


>gi|315127074|ref|YP_004069077.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Pseudoalteromonas sp. SM9913]
 gi|315015588|gb|ADT68926.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Pseudoalteromonas sp. SM9913]
          Length = 386

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/207 (37%), Positives = 115/207 (55%), Gaps = 6/207 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I   + +  +     + VS+ A  +N    SK++++     + +    
Sbjct: 62  PASLTKMMTSYVIGTEINAGNIAPTDMVTVSEKAWAKNFPESSKMFIEVGKQVSVDDLNH 121

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E I+GSE  FA LM+  A+KIGM NT + N+ GL      TT RD
Sbjct: 122 GIIIQSGNDACVAMAEHIAGSESAFADLMNAHAEKIGMTNTHFVNSHGLDTDAHYTTPRD 181

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A LG  L ++ P  Y  +  + F +      N N LL ++  ++DGIKTG+T  +G+++
Sbjct: 182 MATLGAALIRDVPDEYALYKQKSFTFNGIKQYNRNSLLWDESLDVDGIKTGHTSEAGYSL 241

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQK 279
           VTS    D  ++AVVMG  TS ER +K
Sbjct: 242 VTSATKNDMRLIAVVMG--TSSERARK 266


>gi|320173897|gb|EFW49075.1| D-alanyl-D-alanine carboxypeptidase [Shigella dysenteriae CDC
           74-1112]
          Length = 279

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A A  NP     S ++LK    
Sbjct: 59  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWAMGNPALRGSSVMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 119 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 178

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 179 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 233

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 234 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279


>gi|213648937|ref|ZP_03378990.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
          Length = 387

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 124/222 (55%), Gaps = 9/222 (4%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 59  DEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AK++G+ NT ++   GL   
Sbjct: 119 VSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAP 178

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL--NKMHNIDGIKTG 243
            Q +TARD A+LG  L  + P  Y     ++F + N    N N+LL    +H +DG+KTG
Sbjct: 179 GQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLH-VDGMKTG 237

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 238 TTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279


>gi|90412590|ref|ZP_01220592.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
           profundum 3TCK]
 gi|90326398|gb|EAS42810.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
           profundum 3TCK]
          Length = 399

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 136/264 (51%), Gaps = 13/264 (4%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDV---------NKNQMTGFKQDEPRYPASLTKMMT 85
           LF  + M S+     A    S  VID          +   +  F ++EP  PASLTK+MT
Sbjct: 12  LFTLVTMASLPFSASADVLPSPPVIDAKAWLLMSYESGQVIASFNENEPLAPASLTKIMT 71

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSAND 142
            Y++ + + +  ++ +  + +S+ A  +     SK++L      T +Q    +I  S ND
Sbjct: 72  SYVVGKEINAGHINNDDLVIISENAWGKKFPGSSKMFLNIGDNVTVDQLNKGVIISSGND 131

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E ++G +  F  +M+ +A+ IGMQNT + N  GL    Q TTA D AIL   L 
Sbjct: 132 ATVALAEHVAGHQAAFIEMMNRQAEVIGMQNTYFTNPHGLDADEQFTTAYDMAILTRALI 191

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           K  P+ Y  F  + F +++    N N LL +   N+DG+KTG+T  +G+++V+S      
Sbjct: 192 KELPEMYGLFKEKSFTFQDIKQGNRNGLLWDTTLNVDGVKTGHTSKAGYSLVSSAEQSGQ 251

Query: 262 PIVAVVMGMPTSQERDQKALELIT 285
             +AVVMG  ++  R  ++ +L+T
Sbjct: 252 RFIAVVMGTKSTGTRRSESKKLLT 275


>gi|333006637|gb|EGK26136.1| D-alanyl-D-alanine carboxypeptidase dacC domain protein [Shigella
           flexneri VA-6]
          Length = 269

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/213 (36%), Positives = 118/213 (55%), Gaps = 17/213 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 59  DEKLDPASLTKIMTSYVVGQVLKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 119 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 178

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 179 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 233

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           +KTG T  +G+N+V S    D  +++VV+G  T
Sbjct: 234 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKT 266


>gi|217972275|ref|YP_002357026.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS223]
 gi|217497410|gb|ACK45603.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS223]
          Length = 391

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 137/237 (57%), Gaps = 11/237 (4%)

Query: 57  IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           +++D N  Q+       E   PASLTKMMT Y+I + +++  + ++  + +SK A ++N 
Sbjct: 42  VLMDYNSGQIIAESNAYESLNPASLTKMMTSYVIGQEIKAGNVSVDDDVTISKNAWSKNF 101

Query: 115 --PSKLYLKEKTYFTTEQGIL--ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
              SK++++  T  T + G L   +I +S ND   A  E I+G+E  F  +M++ AK++G
Sbjct: 102 SDSSKMFIEVGT--TVKVGDLNRGIIIQSGNDACVAMAEHIAGTEGAFVDMMNSWAKQLG 159

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ ++NA GL  +N  +TA D A+LG  L ++ P  Y  +S + + +      N N L
Sbjct: 160 MRDSYFENAHGLDAENHKSTAYDMALLGAALIRDVPDEYHIYSEKFYTFNGIKQYNRNGL 219

Query: 231 L--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           L  N M ++DGIKTG+T  +G+N+V S       +++VVMG  +   R  ++ +L+T
Sbjct: 220 LWDNSM-DVDGIKTGHTSGAGYNLVASATKDGMRLISVVMGTQSESARKAESKKLLT 275


>gi|77359968|ref|YP_339543.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76874879|emb|CAI86100.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 387

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/207 (37%), Positives = 116/207 (56%), Gaps = 6/207 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I   +++  +     + VS+ A  +N    SK++++     + +    
Sbjct: 62  PASLTKMMTSYVIGTEVKAGNIAPTDMVTVSEKAWAKNFPESSKMFIEVGKQISVDDLNH 121

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E I+GSE  FA LM+  A K+GM NT + N+ GL      TT RD
Sbjct: 122 GIIIQSGNDACVAMAEHIAGSESAFADLMNAHAAKLGMSNTHFINSHGLDTDAHYTTPRD 181

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A LG  L ++ P  Y  +  + F Y      N N LL ++  ++DGIKTG+T ++G+++
Sbjct: 182 MATLGGALIRDVPDEYALYKKKSFTYNGIKQYNRNSLLWDESLDVDGIKTGHTSDAGYSL 241

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQK 279
           VTS    D  ++AVVMG  TS ER +K
Sbjct: 242 VTSATKNDMRLIAVVMG--TSSERARK 266


>gi|163752391|ref|ZP_02159585.1| D-alanyl-D-alanine carboxypeptidase [Shewanella benthica KT99]
 gi|161327728|gb|EDP98916.1| D-alanyl-D-alanine carboxypeptidase [Shewanella benthica KT99]
          Length = 348

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/212 (34%), Positives = 121/212 (57%), Gaps = 4/212 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I   ++   +    ++ +SK A ++N    SK++++     T +    
Sbjct: 20  PASLTKMMTSYVIGHEIKVGNISPEDEVTISKKAWSKNFPDSSKMFIEVGKQVTVDDLNH 79

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E I+G+E  F  LM++ A ++GM+++ ++N+ GL  KN  +TA D
Sbjct: 80  GIIIQSGNDACVAMAEHIAGTEDGFVDLMNSWAIQLGMKDSFFENSHGLDAKNHKSTAYD 139

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A+LG  L ++ P  Y  +  + F Y      N N LL +K  N+DGIKTG+T  +G+N+
Sbjct: 140 MALLGAALIRDVPDEYAVYKQKSFTYNGIKQYNRNGLLWDKSMNVDGIKTGHTSGAGYNL 199

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           VTS       +++VVMG  +   R  ++ +L+
Sbjct: 200 VTSATKDGMRLISVVMGTKSENARKAESKKLL 231


>gi|254227305|ref|ZP_04920737.1| beta-lactamase, putative [Vibrio sp. Ex25]
 gi|262396428|ref|YP_003288281.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25]
 gi|151939917|gb|EDN58743.1| beta-lactamase, putative [Vibrio sp. Ex25]
 gi|262340022|gb|ACY53816.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25]
          Length = 385

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 124/213 (58%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y++ + +++ +L  +  + VS+ A +      SK+++K K   +    + 
Sbjct: 57  PASLTKLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAKFPGSSKMFIKPKDEISVANLMR 116

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E ++GSE+ F  LM+  A+K+G+Q+T + N+ GL  +   T+  D
Sbjct: 117 GVIIQSGNDACVALAEHVAGSERGFVALMNGWAEKLGLQDTYFVNSHGLDSEGIQTSPTD 176

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A L   +  + P  Y  +S + F++ +    N NKLL +   ++DG KTGYT N+G+++
Sbjct: 177 MAKLMQSIINDVPAVYALYSEKVFKWNDITQYNRNKLLWDNSIDVDGGKTGYTSNAGYSL 236

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           V+S +     +++VVMG P+ Q R  ++  L++
Sbjct: 237 VSSAKEGKMRLISVVMGTPSKQARTSQSKNLLS 269


>gi|16759773|ref|NP_455390.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29142454|ref|NP_805796.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56414047|ref|YP_151122.1| D-alanyl-D-alanine carboxypeptidase subunit C [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62179427|ref|YP_215844.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161614874|ref|YP_001588839.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|168263619|ref|ZP_02685592.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|194445951|ref|YP_002040103.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194470485|ref|ZP_03076469.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|197262228|ref|ZP_03162302.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197362970|ref|YP_002142607.1| D-alanyl-D-alanine carboxypeptidase subunit C [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|200391099|ref|ZP_03217710.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205352115|ref|YP_002225916.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207856297|ref|YP_002242948.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|213583237|ref|ZP_03365063.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213612370|ref|ZP_03370196.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|224582675|ref|YP_002636473.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|289827182|ref|ZP_06545924.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25297768|pir||AD0604 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6
           precursor) [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16502066|emb|CAD05302.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6
           precursor) [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29138084|gb|AAO69645.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56128304|gb|AAV77810.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6
           precursor) [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62127060|gb|AAX64763.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161364238|gb|ABX68006.1| hypothetical protein SPAB_02628 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404614|gb|ACF64836.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194456849|gb|EDX45688.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|197094447|emb|CAR59963.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6
           precursor) [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197240483|gb|EDY23103.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|199603544|gb|EDZ02090.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205271896|emb|CAR36737.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6
           precursor) [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205347698|gb|EDZ34329.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206708100|emb|CAR32392.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6
           precursor) [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224467202|gb|ACN45032.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6
           precursor) [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|320085138|emb|CBY94925.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322713895|gb|EFZ05466.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|326622581|gb|EGE28926.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326627157|gb|EGE33500.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 400

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 124/221 (56%), Gaps = 7/221 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 59  DEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AK++G+ NT ++   GL   
Sbjct: 119 VSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAP 178

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGY 244
            Q +TARD A+LG  L  + P  Y     ++F + N    N N+LL   + ++DG+KTG 
Sbjct: 179 GQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGT 238

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 239 TAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279


>gi|16764225|ref|NP_459840.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|167992114|ref|ZP_02573212.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|16419371|gb|AAL19799.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|205329616|gb|EDZ16380.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261246119|emb|CBG23922.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6
           precursor) [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267992623|gb|ACY87508.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157447|emb|CBW16936.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6
           precursor) [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312911888|dbj|BAJ35862.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321226445|gb|EFX51496.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323129170|gb|ADX16600.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332987795|gb|AEF06778.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 400

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 124/221 (56%), Gaps = 7/221 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 59  DEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AK++G+ NT ++   GL   
Sbjct: 119 VSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAP 178

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGY 244
            Q +TARD A+LG  L  + P  Y     ++F + N    N N+LL   + ++DG+KTG 
Sbjct: 179 GQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGT 238

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 239 TAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279


>gi|254465451|ref|ZP_05078862.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacterales bacterium Y4I]
 gi|206686359|gb|EDZ46841.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacterales bacterium Y4I]
          Length = 389

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 115/218 (52%), Gaps = 5/218 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D P  PAS++K+MTLY+ FE L+  +L L+ ++PVS+ A +   S ++L        E  
Sbjct: 49  DVPLPPASMSKLMTLYVAFEALRDGRLTLDERLPVSEHAMSYGGSTMFLDTTDRVRVEDL 108

Query: 132 ILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           +  +I  S ND      E +S  G+E  FA  M+ +A+ +GM  + + N++G        
Sbjct: 109 LRGIIVLSGNDACVVIAEALSPDGTEAGFARYMTKRAEDMGMTASTFANSNGWPAAGHRM 168

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI---ITNHNKLLNKMHNIDGIKTGYTR 246
           +  D A+L   L ++FP+YY  F+   F +  R    I N N LL      DG+KTG+T 
Sbjct: 169 SVHDLAVLAERLIEDFPEYYPLFAETTFEFDGRAPSNIRNRNPLLRLGIGADGLKTGHTE 228

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +G+ +V S    D  ++ VV G+ T + R ++A  ++
Sbjct: 229 EAGYGLVGSATQGDRRVIFVVSGLDTERGRAEEAEAIV 266


>gi|269960275|ref|ZP_06174649.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834886|gb|EEZ88971.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 388

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 118/204 (57%), Gaps = 4/204 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y++ + ++S +L  + ++ VS+ A +    + SK++++ K   T    + 
Sbjct: 60  PASLTKLMTAYVVGQEIKSGRLQWDDKVTVSENAWSAKFPDSSKMFIQPKDEITVANLMR 119

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E ++GSE  F  LM+  A K+ + +T + N+ GL  +   T+  D
Sbjct: 120 GVIIQSGNDACVALAEHVAGSEGAFVALMNGWADKLSLNDTYFVNSHGLDSEGIQTSPND 179

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A L   +  + P+ Y  +S + F++      N NKLL +K  ++DG KTGYT N+G+++
Sbjct: 180 MATLMQSIINDVPEVYALYSEKVFKWNKITQYNRNKLLWDKSMDVDGGKTGYTSNAGYSL 239

Query: 253 VTSLRYKDDPIVAVVMGMPTSQER 276
           V+S +     +++VVMG P+ Q R
Sbjct: 240 VSSAKQGKMRLISVVMGTPSKQSR 263


>gi|104783763|ref|YP_610261.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           [Pseudomonas entomophila L48]
 gi|95112750|emb|CAK17478.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           (precursor) [Pseudomonas entomophila L48]
          Length = 386

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 148/286 (51%), Gaps = 13/286 (4%)

Query: 27  NIQLMGKILFLSIIMI----SMASE--LHAKPKYSS---IVIDVNK-NQMTGFKQDEPRY 76
           NI  + K L L ++++    + A+E  + A P+ ++   +++D +  N +     DE   
Sbjct: 2   NITNLAKRLCLPVLLLITPAAFAAEQMMPAPPQLAAKSYVLMDASSGNVLVENNGDERLP 61

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT YI    ++  ++  N  + VS+ A     S++++K  +  T    +  +I
Sbjct: 62  PASLTKLMTAYIATLDIRRGQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGII 121

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E I+GSE  FA +M+  A  +GM N+ + N +GL +    ++A D A+
Sbjct: 122 IQSGNDASVALSEHIAGSEDAFADMMNKTAGDLGMANSHFMNPTGLPNPEHYSSAHDMAL 181

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   +    P +Y  +S ++F + N    N N LL +   +DG+KTG+T  +G+ +V S 
Sbjct: 182 LARAIINEDPAHYAIYSQKEFYWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVASA 241

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTH 299
                 ++AVV G  + Q R  +  +L+T    F E +T   + T 
Sbjct: 242 VRDGQRLIAVVFGTNSEQSRAAETQKLLTYGFRFFETQTFYQKGTE 287


>gi|260459469|ref|ZP_05807724.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium
           opportunistum WSM2075]
 gi|259035023|gb|EEW36279.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium
           opportunistum WSM2075]
          Length = 387

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 120/218 (55%), Gaps = 5/218 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYF 126
           D+P  PAS+ K+MT+ ++F  ++S +L L+    VS+ A     A    S ++ K K+  
Sbjct: 53  DKPIQPASMAKLMTMEVVFNAIKSGRLKLDDTFVVSENAWRKGGAPSGTSTMFAKLKSSV 112

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
             E  I  +  ++AND      E ++GSE  FA  M+ +A++IG++ + + N++GL    
Sbjct: 113 RLEDLIQGVTVQAANDGCIVIAEGMAGSEDNFAAQMTERARQIGLKTSTFVNSTGLPADG 172

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           Q T+ R+   L + L +N+P +Y+Y+S++ F +      N N LL      DG+  G + 
Sbjct: 173 QQTSVRELTQLALHLWRNYPDFYRYYSLKDFTWNKISQRNRNPLLAMDIGADGLAVGASE 232

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            SGF IV S+ +    ++A + G+   +ER ++A +L+
Sbjct: 233 ASGFGIVGSVSHNGTRVIAALSGLANDKERAEEARKLL 270


>gi|204930006|ref|ZP_03221027.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204321000|gb|EDZ06201.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 400

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 124/221 (56%), Gaps = 7/221 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 59  DEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AK++G+ NT ++   GL   
Sbjct: 119 VSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAP 178

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGY 244
            Q +TARD A+LG  L  + P  Y     ++F + N    N N+LL   + ++DG+KTG 
Sbjct: 179 GQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGT 238

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 239 TAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279


>gi|194735164|ref|YP_002113956.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195874051|ref|ZP_02700341.2| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197250312|ref|YP_002145817.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197300887|ref|ZP_02661864.2| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|198246085|ref|YP_002214828.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205357020|ref|ZP_02344188.2| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205358377|ref|ZP_02655826.2| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205359776|ref|ZP_02831975.2| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194710666|gb|ACF89887.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195630952|gb|EDX49538.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197214015|gb|ACH51412.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197290207|gb|EDY29564.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197940601|gb|ACH77934.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205324544|gb|EDZ12383.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205334736|gb|EDZ21500.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205343236|gb|EDZ30000.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
          Length = 426

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 124/221 (56%), Gaps = 7/221 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 85  DEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 144

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AK++G+ NT ++   GL   
Sbjct: 145 VSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAP 204

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGY 244
            Q +TARD A+LG  L  + P  Y     ++F + N    N N+LL   + ++DG+KTG 
Sbjct: 205 GQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGT 264

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 265 TAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 305


>gi|332160854|ref|YP_004297431.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318604756|emb|CBY26254.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665084|gb|ADZ41728.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330863383|emb|CBX73505.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia enterocolitica
           W22703]
          Length = 403

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 137/253 (54%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   + ++ID N  ++      D  R PASLTKMMT Y+I + +++ K+ 
Sbjct: 37  MIPGVPQIDAE---AYVLIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGKIG 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V K A AT NP     S ++LK        +    +  +S ND   A  ++++G
Sbjct: 94  PEDMVTVGKDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+N  K +G+QNT +K   GL  + Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDSFVNLMNNYVKALGLQNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAIYK 213

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F + N    N N LL +   N+DGIKTG+T  +G+N+V S       +++ V+G  T
Sbjct: 214 EKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTDAAGYNLVASATDGQMRLISAVLGGHT 273

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 274 YKGRETESKKLLT 286


>gi|254436605|ref|ZP_05050099.1| D-alanyl-D-alanine carboxypeptidase family [Octadecabacter
           antarcticus 307]
 gi|198252051|gb|EDY76365.1| D-alanyl-D-alanine carboxypeptidase family [Octadecabacter
           antarcticus 307]
          Length = 399

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 111/215 (51%), Gaps = 10/215 (4%)

Query: 72  DEPRYPASLTKMMTLYIIFEYL-----QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYF 126
           D+P  PAS++K+MTLY+ FE +     Q   L  +  +PVS+       S ++L      
Sbjct: 51  DDPLPPASMSKLMTLYMAFEAVNPLNGQDPILTFDDVLPVSQHCMDYTGSTMFLDTTDRV 110

Query: 127 TTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
             E  +  +I  S ND S    E +S  G+E  FA  M+ +A++IGM N+ + N++G   
Sbjct: 111 RVEDLVRGIIVLSGNDASCVIAEALSRDGTEAGFAQQMTERAQQIGMMNSSFANSNGWPA 170

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR---IITNHNKLLNKMHNIDGIK 241
                T RD   L   L  ++P YY  F+ R+F Y       I N N LL      DG+K
Sbjct: 171 AGNRVTMRDLGTLADRLITDYPTYYPLFAEREFDYDGEHLANIRNRNPLLALNIGADGLK 230

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           TG+TR +GF +V S +  D  I+ VV G+ T+QER
Sbjct: 231 TGHTREAGFGLVGSAKQGDRRIIFVVTGIETAQER 265


>gi|168240742|ref|ZP_02665674.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|194447475|ref|YP_002044893.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194405779|gb|ACF65998.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|205340371|gb|EDZ27135.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
          Length = 400

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 124/221 (56%), Gaps = 7/221 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 59  DEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AK++G+ NT ++   GL   
Sbjct: 119 VSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAP 178

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGY 244
            Q +TARD A+LG  L  + P  Y     ++F + N    N N+LL   + ++DG+KTG 
Sbjct: 179 GQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGT 238

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 239 TAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279


>gi|148975180|ref|ZP_01812104.1| D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium SWAT-3]
 gi|145965104|gb|EDK30354.1| D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium SWAT-3]
          Length = 417

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 121/213 (56%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT---QNPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y++ + +++ +L    ++ VS+ A +      SK++++     +    + 
Sbjct: 79  PASLTKLMTAYVVGQEIKAGRLTWQDKVSVSENAWSAKFSESSKMFIQPGDEISVSNLMK 138

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND S A  E I+GSE+ F  LM+  AK +G+Q+T + NA GL  +   T+  D
Sbjct: 139 GVIVQSGNDASVALAEHIAGSEQAFVSLMNGWAKSLGLQDTNFVNAHGLDGEGIQTSPLD 198

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            AIL   + ++ P  Y  +  R+F +      N NKLL +K  N+DG KTGYT N+G+++
Sbjct: 199 MAILMKSIIRDVPDVYALYQERRFTWNKITQYNRNKLLWDKSINVDGGKTGYTENAGYSL 258

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           V+S       +++VVMG  + Q R   +  L++
Sbjct: 259 VSSATEGKMRLISVVMGTTSPQARTSASKNLLS 291


>gi|123443220|ref|YP_001007194.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122090181|emb|CAL13044.1| putative penicillin-binding protein 5 [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 403

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 137/253 (54%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   + ++ID N  ++      D  R PASLTKMMT Y+I + +++ K+ 
Sbjct: 37  MIPGVPQIDAE---AYVLIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGKIG 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V K A AT NP     S ++LK        +    +  +S ND   A  ++++G
Sbjct: 94  PEDMVTVGKDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+N  K +G+QNT +K   GL  + Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDSFVNLMNNYVKALGLQNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAIYK 213

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F + N    N N LL +   N+DGIKTG+T  +G+N+V S       +++ V+G  T
Sbjct: 214 EKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTDAAGYNLVASATDGQMRLISAVLGGHT 273

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 274 YKGRETESKKLLT 286


>gi|254284899|ref|ZP_04959865.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae AM-19226]
 gi|150424902|gb|EDN16679.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae AM-19226]
          Length = 389

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 133/237 (56%), Gaps = 16/237 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + ++   +H + Q+ +S  A  +   + SK++++  TY        
Sbjct: 62  PASLTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYR 121

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL +    +T  D
Sbjct: 122 GLIVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYD 181

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK---LLNKMHNIDGIKTGYTRNSGF 250
            A+LG  + ++ P+ Y  +S   F Y    IT HN+   L ++  N+DG+KTGYT  +G+
Sbjct: 182 IALLGRAMIRDLPEIYPLYSELSFTYNG--ITQHNRNGLLRDRSMNVDGMKTGYTSGAGY 239

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKDNL 304
           ++ +S    +  +++VVMG  + + R+ ++ +L++    F E  T      H+KD++
Sbjct: 240 SLASSATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVT-----PHQKDSV 291


>gi|271499698|ref|YP_003332723.1| beta-lactamase [Dickeya dadantii Ech586]
 gi|270343253|gb|ACZ76018.1| Beta-lactamase [Dickeya dadantii Ech586]
          Length = 403

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/256 (33%), Positives = 141/256 (55%), Gaps = 17/256 (6%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   + I+ID N  ++   K  D  R PASLTKMMT Y+I + +++ K+ 
Sbjct: 37  MIPAVPDIDAE---AYILIDYNSGKVLAEKNADARRNPASLTKMMTSYVIGQAIKAGKIT 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKT---YFTTEQGILALITRSANDVSTAFGEF 150
            N  + + K A AT NP     S ++LK       +   +GI   I +S ND   A  ++
Sbjct: 94  PNDVVTIGKDAWATGNPDFQGSSLMFLKPGDRVPVYLLNKGI---ILQSGNDACVAMADY 150

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           ++GS+  F  LM+   K +G+QNT +K   GL  + Q ++ARD A++G  L ++ P  Y 
Sbjct: 151 VAGSQDAFVNLMNGYVKALGLQNTNFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYA 210

Query: 211 YFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            +  ++F + N    N N LL +    +DGIKTG+T ++G+N+V S       +++ VMG
Sbjct: 211 TYKEKEFTFNNIRQLNRNGLLWDSSLAVDGIKTGHTASAGYNLVASATEGQMRLISAVMG 270

Query: 270 MPTSQERDQKALELIT 285
             T + R+ ++ +L+T
Sbjct: 271 GRTYKGRETESKKLLT 286


>gi|119713334|gb|ABL97398.1| D-alanyl-D-alanine carboxypeptidase [uncultured marine bacterium
           EB80_02D08]
          Length = 385

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/265 (32%), Positives = 141/265 (53%), Gaps = 16/265 (6%)

Query: 31  MGKILF--LSIIMISM-------ASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASL 80
           M KILF  LSI  I         A EL  K   S I+I+ N N +   +  +    PAS+
Sbjct: 1   MKKILFILLSISTIGESQSFVPDAPELDVK---SYILIEPNTNTIIAEYNSESEIEPASM 57

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           TK+MT Y++ + + +  + L+ ++ +S+ A     SK +++     T    +  ++ +S 
Sbjct: 58  TKIMTSYVVADQISNGLISLDDEVLISEKAWRMKGSKTFIEAGKKVTVSDLLKGIMIQSG 117

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND S A  E+  G+E+ F  LM++ A  +GM NTI++NA+GL D+N  ++A+D A L   
Sbjct: 118 NDASVAIAEYAGGTERGFVDLMNSYASSLGMNNTIFQNATGLPDENHFSSAKDLANLTSN 177

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
               FP+ Y  +  ++F + N    N NKLL +  + DG+KTG+T  +G+ +V S +   
Sbjct: 178 YINKFPEEYALYKQKEFTFNNIKQLNRNKLLWRDDSTDGVKTGHTEAAGYCLVGSAKRGG 237

Query: 261 DPIVAVVMGMPTSQER---DQKALE 282
             ++ VV G  +  +R    Q+ LE
Sbjct: 238 MRLITVVAGSKSDNDRFLSSQRLLE 262


>gi|54310018|ref|YP_131038.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
           profundum SS9]
 gi|46914457|emb|CAG21236.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
           profundum SS9]
          Length = 391

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 130/233 (55%), Gaps = 5/233 (2%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           I++D N  ++      DE  +PASLTKM+T Y+I + ++S  + L+ ++ VS  A  +N 
Sbjct: 42  ILMDYNSGKIIAENNSDEKLHPASLTKMLTSYVIGQEIKSGNISLDDKVSVSNNAWAKNF 101

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L+     T ++    +I +S ND  TA  E I+GS   F  LM+  AK+IGM+
Sbjct: 102 PGSSKMFLEPGKLVTVQELNKGIIIQSGNDACTAMAEHIAGSTGSFVELMNAWAKRIGME 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           ++ + N  GL + +  +TA D A L   + ++ P  Y  +  + F Y      N N LL 
Sbjct: 162 SSHFVNVHGLDNDDHFSTAHDMATLAQAVIRDVPDEYAIYKEKSFTYNGITQYNRNGLLW 221

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +K  N+DG+KTG+T  +G+++V S       +++VVMG  ++  R  ++ +L+
Sbjct: 222 DKSLNVDGMKTGHTDQAGYSLVASAYEGKMRLISVVMGTKSANARKAESKKLL 274


>gi|238913835|ref|ZP_04657672.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 400

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 124/221 (56%), Gaps = 7/221 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 59  DEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AK++G+ NT ++   GL   
Sbjct: 119 VSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAP 178

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGY 244
            Q +TARD A+LG  L  + P  Y     ++F + N    N N+LL   + ++DG+KTG 
Sbjct: 179 GQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGT 238

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 239 TAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279


>gi|213428063|ref|ZP_03360813.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
          Length = 402

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 124/222 (55%), Gaps = 9/222 (4%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 59  DEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AK++G+ NT ++   GL   
Sbjct: 119 VSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAP 178

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL--NKMHNIDGIKTG 243
            Q +TARD A+LG  L  + P  Y     ++F + N    N N+LL    +H +DG+KTG
Sbjct: 179 GQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLH-VDGMKTG 237

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 238 TTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279


>gi|90578192|ref|ZP_01234003.1| D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14]
 gi|90441278|gb|EAS66458.1| D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14]
          Length = 459

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 118/216 (54%), Gaps = 3/216 (1%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           I+ID N  Q+        R  PAS TK+M +YI+ + L    + L++++ V + A     
Sbjct: 107 ILIDANTGQIIASNNANMRMAPASTTKLMLMYIVEQKLADGVISLDSKVLVPEVAWRTGG 166

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S+++LK  +Y + +  I  +I  S ND +     +++GS+  F  +M+  A K+GM NT 
Sbjct: 167 SRMFLKPGSYVSVKDLIQGVIVESGNDAAVTLANYVAGSQSSFVSMMNATAVKLGMHNTH 226

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           +    GL      +TA D  +LG  +  ++PQY+ +FS + F Y +    N N+LL    
Sbjct: 227 FTTVMGLPAPAHFSTAYDLGLLGEHIMNDYPQYFHFFSQKYFEYNHIRQPNFNRLLFTYQ 286

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDP--IVAVVMG 269
              G+KTG T  +G+++V+S +  D+P  +VAVV+G
Sbjct: 287 YATGMKTGSTEAAGYSLVSSAKMPDNPMNLVAVVLG 322


>gi|304397386|ref|ZP_07379264.1| Beta-lactamase [Pantoea sp. aB]
 gi|304355004|gb|EFM19373.1| Beta-lactamase [Pantoea sp. aB]
          Length = 387

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 126/240 (52%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT 112
           S +++D    Q +T    DE R PASLTK+MT Y++   +  KK+  +  + V K A   
Sbjct: 37  SWVLMDATTGQVLTAGNPDERRNPASLTKLMTGYVVDRAIDQKKISRDDMVTVGKDAWGA 96

Query: 113 QNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
            NP     S ++LK     +       +I  S ND   A  ++++GSE  F  +M++  +
Sbjct: 97  GNPVFKGSSLMFLKPGDKLSVRDLSRGVIIDSGNDACVALADYVAGSEANFVGMMNHYVE 156

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           K+G+QNT ++   GL    Q ++A D A L   +    P +Y  +S +   +      N 
Sbjct: 157 KLGLQNTHFETVHGLDAPGQFSSALDMAKLSRAIIDGEPDFYAMYSEKTLTWNGITQNNR 216

Query: 228 NKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N LL  N +H +DG+KTG+T  +GFNI+ S       ++AVVMG  +S+ R+++A +L+ 
Sbjct: 217 NGLLWDNNLH-VDGLKTGHTETAGFNIIASNVVGKHRLIAVVMGGKSSKGREEQARKLLV 275


>gi|163857632|ref|YP_001631930.1| penicillin-binding protein precursor [Bordetella petrii DSM 12804]
 gi|163261360|emb|CAP43662.1| penicillin-binding protein precursor [Bordetella petrii]
          Length = 371

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/267 (31%), Positives = 141/267 (52%), Gaps = 13/267 (4%)

Query: 41  MISMAS-ELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           M S+AS +    P  ++   +++D    Q M  F  D    PASLTK+MT Y++F+ L+ 
Sbjct: 1   MASLASAQAQVAPPVTAKAWMLLDATSGQEMASFNADTRVEPASLTKVMTAYLVFQALRD 60

Query: 96  KKLHLNTQIPVSKTAATQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            +L     + VS  A    P  SK++L+     +    +  L+ +S ND +    E +SG
Sbjct: 61  GRLSTQQLVTVSTRAWKVAPGSSKMFLEPGKRVSVNDLLFGLLVQSGNDAAIVLAEAVSG 120

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK-YF 212
           S + F   M+ +A ++G+++T + +  GL D    +TARD A+L   L +++P  YK Y 
Sbjct: 121 SVEAFVQRMNQQAAQMGLRDTHFASPHGLPDPGTYSTARDLALLARRLVRDYPDLYKTYD 180

Query: 213 SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP----IVAVVM 268
           S R F Y N    N N+LL    ++DG+KTG+T  +G+ ++ S    D      +++VVM
Sbjct: 181 SARTFTYNNISQPNRNRLLWLDPSVDGLKTGHTDAAGYCLIASAERPDGQSRRRLISVVM 240

Query: 269 GMPTSQERDQKALELIT-SFLEKKTLK 294
           G  + + R +++  L+   F   KT+K
Sbjct: 241 GTASDKLRTEESRVLLNWGFQNFKTIK 267


>gi|161503974|ref|YP_001571086.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865321|gb|ABX21944.1| hypothetical protein SARI_02067 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 400

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 123/221 (55%), Gaps = 7/221 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 59  DEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AK++G+ NT ++   GL   
Sbjct: 119 VSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAP 178

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGY 244
            Q +TARD A+LG  L  + P  Y     ++F + N    N N+LL   +  +DG+KTG 
Sbjct: 179 GQFSTARDMALLGKALIHDVPDEYALHKEKEFTFNNIRQPNRNRLLWSTNLQVDGMKTGT 238

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 239 TSGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279


>gi|323227523|gb|EGA11683.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
          Length = 402

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 124/222 (55%), Gaps = 9/222 (4%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 59  DEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AK++G+ NT ++   GL   
Sbjct: 119 VSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAP 178

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL--NKMHNIDGIKTG 243
            Q +TARD A+LG  L  + P  Y     ++F + N    N N+LL    +H +DG+KTG
Sbjct: 179 GQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLH-VDGMKTG 237

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 238 TTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279


>gi|229514750|ref|ZP_04404211.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TMA 21]
 gi|229348730|gb|EEO13688.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TMA 21]
          Length = 389

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 133/237 (56%), Gaps = 16/237 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + ++   +H + Q+ +S  A  +   + SK++++  TY        
Sbjct: 62  PASLTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYR 121

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL +    +T  D
Sbjct: 122 GLIVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYD 181

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK---LLNKMHNIDGIKTGYTRNSGF 250
            A+LG  + ++ P+ Y  +S   F Y    IT HN+   L ++  N+DG+KTGYT  +G+
Sbjct: 182 IALLGRAIIRDLPEIYPLYSELSFTYNG--ITQHNRNGLLRDRSMNVDGMKTGYTSGAGY 239

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKDNL 304
           ++ +S    +  +++VVMG  + + R+ ++ +L++    F E  T      H+KD++
Sbjct: 240 SLASSATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVT-----PHQKDSV 291


>gi|229522951|ref|ZP_04412365.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TM 11079-80]
 gi|229527763|ref|ZP_04417154.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 12129(1)]
 gi|229334125|gb|EEN99610.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 12129(1)]
 gi|229340168|gb|EEO05176.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TM 11079-80]
          Length = 389

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 133/237 (56%), Gaps = 16/237 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + ++   +H + Q+ +S  A  +   + SK++++  TY        
Sbjct: 62  PASLTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYR 121

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL +    +T  D
Sbjct: 122 GLIVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYD 181

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK---LLNKMHNIDGIKTGYTRNSGF 250
            A+LG  + ++ P+ Y  +S   F Y    IT HN+   L ++  N+DG+KTGYT  +G+
Sbjct: 182 IALLGRAIIRDLPEIYPLYSELSFTYNG--ITQHNRNGLLRDRSMNVDGMKTGYTSGAGY 239

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKDNL 304
           ++ +S    +  +++VVMG  + + R+ ++ +L++    F E  T      H+KD++
Sbjct: 240 SLASSATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVT-----PHQKDSV 291


>gi|184158962|ref|YP_001847301.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii ACICU]
 gi|183210556|gb|ACC57954.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii ACICU]
 gi|322508944|gb|ADX04398.1| dacC [Acinetobacter baumannii 1656-2]
 gi|323518930|gb|ADX93311.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 382

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 145/264 (54%), Gaps = 8/264 (3%)

Query: 45  ASELHAKPKY---SSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           A+ L A P+    S +++D    Q+   K ++E   PAS+TKMMT YII + L   +L  
Sbjct: 20  ATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMTKMMTSYIIEQKLLKGELTE 79

Query: 101 NTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           N Q+ ++++A    + + S +Y+      T  + +  +I +S ND S A  E I+G+E  
Sbjct: 80  NEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAGNEGT 139

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           FA +M+ +AK+IGM NT + N++G+  +   +TA+D A+L   + K+  +YY  +S ++F
Sbjct: 140 FAHMMNQEAKRIGMTNTQFINSTGMPAEGHYSTAKDMAVLAQHIIKDSSKYYPIYSEKEF 199

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER- 276
            +      N N LL    ++DG+KTG+T  +G+ + TS +     +++V+ G P+  ER 
Sbjct: 200 TFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLISVIFGTPSMSERA 259

Query: 277 DQKALELITSFLEKKTLKHQQTHR 300
           DQ    L   F   +T   Q  ++
Sbjct: 260 DQTRALLAWGFANFETANVQPANQ 283


>gi|254225957|ref|ZP_04919558.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V51]
 gi|125621491|gb|EAZ49824.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V51]
          Length = 389

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 133/237 (56%), Gaps = 16/237 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + ++   +H + Q+ +S  A  +   + SK++++  TY        
Sbjct: 62  PASLTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYR 121

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL +    +T  D
Sbjct: 122 GLIVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYD 181

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK---LLNKMHNIDGIKTGYTRNSGF 250
            A+LG  + ++ P+ Y  +S   F Y    IT HN+   L ++  N+DG+KTGYT  +G+
Sbjct: 182 IALLGRAIIRDLPEIYPLYSELSFTYNG--ITQHNRNGLLRDRSMNVDGMKTGYTSGAGY 239

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKDNL 304
           ++ +S    +  +++VVMG  + + R+ ++ +L++    F E  T      H+KD++
Sbjct: 240 SLASSATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVT-----PHQKDSV 291


>gi|297579619|ref|ZP_06941546.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC385]
 gi|297535265|gb|EFH74099.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC385]
          Length = 389

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 133/237 (56%), Gaps = 16/237 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + ++   +H + Q+ +S  A  +   + SK++++  TY        
Sbjct: 62  PASLTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYR 121

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL +    +T  D
Sbjct: 122 GLIVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYD 181

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK---LLNKMHNIDGIKTGYTRNSGF 250
            A+LG  + ++ P+ Y  +S   F Y    IT HN+   L ++  N+DG+KTGYT  +G+
Sbjct: 182 IALLGRAIIRDLPEIYPLYSELSFTYNG--ITQHNRNGLLRDRSMNVDGMKTGYTSGAGY 239

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKDNL 304
           ++ +S    +  +++VVMG  + + R+ ++ +L++    F E  T      H+KD++
Sbjct: 240 SLASSATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVT-----PHQKDSV 291


>gi|322616338|gb|EFY13247.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619588|gb|EFY16463.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622716|gb|EFY19561.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628628|gb|EFY25415.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631565|gb|EFY28321.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637092|gb|EFY33795.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322641708|gb|EFY38344.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322644498|gb|EFY41038.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648431|gb|EFY44883.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654166|gb|EFY50489.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658081|gb|EFY54348.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663555|gb|EFY59757.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322670291|gb|EFY66431.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671527|gb|EFY67649.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676883|gb|EFY72950.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682808|gb|EFY78827.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322686487|gb|EFY82469.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323196059|gb|EFZ81222.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196794|gb|EFZ81938.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323204806|gb|EFZ89801.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323208966|gb|EFZ93903.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323209715|gb|EFZ94642.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215197|gb|EFZ99942.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222423|gb|EGA06799.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323229875|gb|EGA13998.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233100|gb|EGA17196.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240835|gb|EGA24877.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323243152|gb|EGA27172.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248693|gb|EGA32621.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251695|gb|EGA35562.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323257509|gb|EGA41197.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261490|gb|EGA45071.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267921|gb|EGA51400.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323272012|gb|EGA55427.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 400

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 124/221 (56%), Gaps = 7/221 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 59  DEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AK++G+ NT ++   GL   
Sbjct: 119 VSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAP 178

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGY 244
            Q +TARD A+LG  L  + P  Y     ++F + N    N N+LL   + ++DG+KTG 
Sbjct: 179 GQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGT 238

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 239 TAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279


>gi|332874743|ref|ZP_08442613.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6014059]
 gi|332737004|gb|EGJ67961.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6014059]
          Length = 397

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 145/264 (54%), Gaps = 8/264 (3%)

Query: 45  ASELHAKPKY---SSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           A+ L A P+    S +++D    Q+   K ++E   PAS+TKMMT YII + L   +L  
Sbjct: 35  ATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMTKMMTSYIIEQKLLKGELTE 94

Query: 101 NTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           N Q+ ++++A    + + S +Y+      T  + +  +I +S ND S A  E I+G+E  
Sbjct: 95  NEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAGNEGT 154

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           FA +M+ +AK+IGM NT + N++G+  +   +TA+D A+L   + K+  +YY  +S ++F
Sbjct: 155 FAHMMNQEAKRIGMTNTQFINSTGMPAEGHYSTAKDMAVLAQHIIKDSSKYYPIYSEKEF 214

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER- 276
            +      N N LL    ++DG+KTG+T  +G+ + TS +     +++V+ G P+  ER 
Sbjct: 215 TFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLISVIFGTPSMSERA 274

Query: 277 DQKALELITSFLEKKTLKHQQTHR 300
           DQ    L   F   +T   Q  ++
Sbjct: 275 DQTRALLAWGFANFETANVQPANQ 298


>gi|332857068|ref|ZP_08436374.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6013150]
 gi|332870006|ref|ZP_08438982.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6013113]
 gi|332726883|gb|EGJ58397.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6013150]
 gi|332732506|gb|EGJ63757.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6013113]
          Length = 397

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 145/264 (54%), Gaps = 8/264 (3%)

Query: 45  ASELHAKPKY---SSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           A+ L A P+    S +++D    Q+   K ++E   PAS+TKMMT YII + L   +L  
Sbjct: 35  ATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMTKMMTSYIIEQKLLKGELTE 94

Query: 101 NTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           N Q+ ++++A    + + S +Y+      T  + +  +I +S ND S A  E I+G+E  
Sbjct: 95  NEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAGNEGT 154

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           FA +M+ +AK+IGM NT + N++G+  +   +TA+D A+L   + K+  +YY  +S ++F
Sbjct: 155 FAHMMNQEAKRIGMTNTQFINSTGMPAEGHYSTAKDMAVLAQHIIKDSSKYYPIYSEKEF 214

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER- 276
            +      N N LL    ++DG+KTG+T  +G+ + TS +     +++V+ G P+  ER 
Sbjct: 215 TFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLISVIFGTPSMSERA 274

Query: 277 DQKALELITSFLEKKTLKHQQTHR 300
           DQ    L   F   +T   Q  ++
Sbjct: 275 DQTRALLAWGFANFETANVQPANQ 298


>gi|153829019|ref|ZP_01981686.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 623-39]
 gi|148875448|gb|EDL73583.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 623-39]
          Length = 389

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 133/237 (56%), Gaps = 16/237 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + ++   +H + Q+ +S  A  +   + SK++++  TY        
Sbjct: 62  PASLTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYR 121

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL +    +T  D
Sbjct: 122 GLIVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYD 181

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK---LLNKMHNIDGIKTGYTRNSGF 250
            A+LG  + ++ P+ Y  +S   F Y    IT HN+   L ++  N+DG+KTGYT  +G+
Sbjct: 182 IALLGRAIIRDLPEIYPLYSELSFTYNG--ITQHNRNGLLRDRSMNVDGMKTGYTSGAGY 239

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKDNL 304
           ++ +S    +  +++VVMG  + + R+ ++ +L++    F E  T      H+KD++
Sbjct: 240 SLASSATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVT-----PHQKDSV 291


>gi|327482406|gb|AEA85716.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas stutzeri DSM 4166]
          Length = 385

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 126/231 (54%), Gaps = 3/231 (1%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   PASLTK+MT YI    +Q  ++  N  + VS+ A     S+++++  T  + +  
Sbjct: 56  DERLPPASLTKLMTAYIATLEIQKGQISDNDMVTVSEKAWRTGGSRMFIQVNTQVSVDDL 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +I +S ND S A  E I+GSE+ FA +M++ A+++GM NT + NA+GL      ++A
Sbjct: 116 LHGIIIQSGNDASVAMAEHIAGSEEAFADMMNSTAQRLGMSNTHFVNATGLPHPEHYSSA 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            D A L   +    P +Y  ++ ++F + N    N N LL +   +DG+KTG+T  +G+ 
Sbjct: 176 NDMAKLARAIIYEDPAHYAIYAQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTEEAGYC 235

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTH 299
           +V S    +  +++VV G  + Q R  +  +L+T    F E +T   + T 
Sbjct: 236 LVASAVRDNMRLISVVFGTDSEQARAAETQKLLTYGFRFFETRTFYQKGTE 286


>gi|169795187|ref|YP_001712980.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           (precursor) [Acinetobacter baumannii AYE]
 gi|213158149|ref|YP_002320200.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase)
           [Acinetobacter baumannii AB0057]
 gi|215482735|ref|YP_002324933.1| Penicillin-binding protein 6 precursor [Acinetobacter baumannii
           AB307-0294]
 gi|239501150|ref|ZP_04660460.1| Penicillin-binding protein 6 precursor [Acinetobacter baumannii
           AB900]
 gi|260556667|ref|ZP_05828885.1| penicillin-binding protein 6 [Acinetobacter baumannii ATCC 19606]
 gi|301346852|ref|ZP_07227593.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           [Acinetobacter baumannii AB056]
 gi|301511131|ref|ZP_07236368.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           [Acinetobacter baumannii AB058]
 gi|301596416|ref|ZP_07241424.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           [Acinetobacter baumannii AB059]
 gi|169148114|emb|CAM85977.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           (precursor) [Acinetobacter baumannii AYE]
 gi|193077945|gb|ABO12853.2| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           (precursor) [Acinetobacter baumannii ATCC 17978]
 gi|213057309|gb|ACJ42211.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase)
           [Acinetobacter baumannii AB0057]
 gi|213987778|gb|ACJ58077.1| Penicillin-binding protein 6 precursor [Acinetobacter baumannii
           AB307-0294]
 gi|260409926|gb|EEX03226.1| penicillin-binding protein 6 [Acinetobacter baumannii ATCC 19606]
          Length = 382

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 145/264 (54%), Gaps = 8/264 (3%)

Query: 45  ASELHAKPKY---SSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           A+ L A P+    S +++D    Q+   K ++E   PAS+TKMMT YII + L   +L  
Sbjct: 20  ATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMTKMMTSYIIEQKLLKGELTE 79

Query: 101 NTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           N Q+ ++++A    + + S +Y+      T  + +  +I +S ND S A  E I+G+E  
Sbjct: 80  NEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAGNEGT 139

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           FA +M+ +AK+IGM NT + N++G+  +   +TA+D A+L   + K+  +YY  +S ++F
Sbjct: 140 FAHMMNQEAKRIGMTNTQFINSTGMPAEGHYSTAKDMAVLAQHIIKDSSKYYPIYSEKEF 199

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER- 276
            +      N N LL    ++DG+KTG+T  +G+ + TS +     +++V+ G P+  ER 
Sbjct: 200 TFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLISVIFGTPSMSERA 259

Query: 277 DQKALELITSFLEKKTLKHQQTHR 300
           DQ    L   F   +T   Q  ++
Sbjct: 260 DQTRALLAWGFANFETANVQPANQ 283


>gi|256828650|ref|YP_003157378.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577826|gb|ACU88962.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 401

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/209 (35%), Positives = 109/209 (52%), Gaps = 1/209 (0%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK++TLYII E L   +L   T IPVS  A     S++ LK        + I  + 
Sbjct: 167 PASITKLLTLYIIREALAQGRLSQATPIPVSAEAVKTGGSRMRLKRNEKVPLGELIKGIS 226

Query: 137 TRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
             SAN+   A  E+   G   KF   M+ KAKKIGM N+ +KN +GL    Q++TARD A
Sbjct: 227 VVSANNACVAVAEYFGKGDPSKFVAQMNEKAKKIGMVNSRFKNPNGLPASGQLSTARDIA 286

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
            L +   + FP+  K  S+    +      N N LL     +DG+KTG+  ++G+NI  +
Sbjct: 287 KLSVAYLRTFPESLKVHSMTSHTFHGATHRNANTLLRTYKGVDGLKTGFVCDAGYNITAT 346

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +     +VAVV+G   S  R ++   L+
Sbjct: 347 AKRGKTRLVAVVLGAQNSAVRQRETARLL 375


>gi|169632895|ref|YP_001706631.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           (precursor) [Acinetobacter baumannii SDF]
 gi|169151687|emb|CAP00477.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           (precursor) [Acinetobacter baumannii]
          Length = 382

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 145/264 (54%), Gaps = 8/264 (3%)

Query: 45  ASELHAKPKY---SSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           A+ L A P+    S +++D    Q+   K ++E   PAS+TKMMT YII + L   +L  
Sbjct: 20  ATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMTKMMTSYIIEQKLLKGELTE 79

Query: 101 NTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           N Q+ ++++A    + + S +Y+      T  + +  +I +S ND S A  E I+G+E  
Sbjct: 80  NEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAGNEGT 139

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           FA +M+ +AK+IGM NT + N++G+  +   +TA+D A+L   + K+  +YY  +S ++F
Sbjct: 140 FAHMMNQEAKRIGMTNTQFINSTGMPAEGHYSTAKDMAVLAQHIIKDSSKYYPIYSEKEF 199

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER- 276
            +      N N LL    ++DG+KTG+T  +G+ + TS +     +++V+ G P+  ER 
Sbjct: 200 TFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLISVIFGTPSMSERA 259

Query: 277 DQKALELITSFLEKKTLKHQQTHR 300
           DQ    L   F   +T   Q  ++
Sbjct: 260 DQTRALLAWGFANFETANVQPANQ 283


>gi|325915034|ref|ZP_08177363.1| penicillin-binding protein 6 [Xanthomonas vesicatoria ATCC 35937]
 gi|325538732|gb|EGD10399.1| penicillin-binding protein 6 [Xanthomonas vesicatoria ATCC 35937]
          Length = 401

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 125/213 (58%), Gaps = 5/213 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL--- 133
           PAS+TK+MT Y++   +++ K+  + Q+ +S+ A  +  +        +   +   L   
Sbjct: 74  PASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWREGGAGTDGSYSGFPVNQTARLEDM 133

Query: 134 --ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
              +  +S ND + A  E ++GSE+ FA LM++ A KIGM+N+ + NA GL  +   +TA
Sbjct: 134 EKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKIGMKNSYFVNAHGLSAEGHHSTA 193

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            D A+LG  + +++P+ Y Y  I++F+  +   +N N+LL +   +DGIKTG+T  +G+ 
Sbjct: 194 YDLAMLGRAMVRDYPETYAYNKIKEFQVGSIKQSNRNRLLWRDPAVDGIKTGHTSEAGYC 253

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +++S +  D  ++AVVMG  + ++R   +L L+
Sbjct: 254 LLSSAKRGDQRLIAVVMGDTSEEQRATDSLALL 286


>gi|146284089|ref|YP_001174242.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas stutzeri A1501]
 gi|145572294|gb|ABP81400.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas stutzeri A1501]
          Length = 385

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 126/231 (54%), Gaps = 3/231 (1%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   PASLTK+MT YI    +Q  ++  N  + VS+ A     S+++++  T  + +  
Sbjct: 56  DERLPPASLTKLMTAYIATLEIQKGQISDNDMVTVSEKAWRTGGSRMFIQVNTQVSVDDL 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +I +S ND S A  E I+GSE+ FA +M++ A+++GM NT + NA+GL      ++A
Sbjct: 116 LHGIIIQSGNDASVAMAEHIAGSEEAFADMMNSTAQRLGMSNTHFVNATGLPHPEHYSSA 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            D A L   +    P +Y  ++ ++F + N    N N LL +   +DG+KTG+T  +G+ 
Sbjct: 176 NDMAKLARAIIYEDPAHYAIYAQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTEEAGYC 235

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTH 299
           +V S    +  +++VV G  + Q R  +  +L+T    F E +T   + T 
Sbjct: 236 LVASAVRDNMRLISVVFGTDSEQARAAETQKLLTYGFRFFETRTFYQKGTE 286


>gi|262278278|ref|ZP_06056063.1| D-Ala-D-Ala-carboxypeptidase [Acinetobacter calcoaceticus RUH2202]
 gi|262258629|gb|EEY77362.1| D-Ala-D-Ala-carboxypeptidase [Acinetobacter calcoaceticus RUH2202]
          Length = 382

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 144/264 (54%), Gaps = 8/264 (3%)

Query: 45  ASELHAKPKY---SSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           A+ L A P+    S +++D    Q+   K ++E   PAS+TKMMT YII + L    L  
Sbjct: 20  ATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMTKMMTSYIIEQKLLKGDLTE 79

Query: 101 NTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           N Q+ ++++A    + + S +Y+      T  + +  +I +S ND S A  E I+G+E  
Sbjct: 80  NEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAGNEGT 139

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           FA +M+ +AK+IGM NT + N++G+  +   +TA+D A+L   + K+  +YY  +S ++F
Sbjct: 140 FAHMMNQEAKRIGMVNTQFVNSTGMPAEGHYSTAKDMAVLAQHIIKDSSKYYPIYSEKEF 199

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER- 276
            +      N N LL    ++DG+KTG+T  +G+ + TS +     +V+V+ G P+  ER 
Sbjct: 200 TFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLVSVIFGTPSMAERA 259

Query: 277 DQKALELITSFLEKKTLKHQQTHR 300
           DQ    L   F   +T   Q  ++
Sbjct: 260 DQTRALLAWGFANFETANVQPANQ 283


>gi|88800720|ref|ZP_01116279.1| D-alanyl-D-alanine carboxypeptidase [Reinekea sp. MED297]
 gi|88776584|gb|EAR07800.1| D-alanyl-D-alanine carboxypeptidase [Reinekea sp. MED297]
          Length = 394

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 142/274 (51%), Gaps = 9/274 (3%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASEL-HAKPKYSS---IVIDVNKNQ-MTGFKQDEPR 75
           S+ I R++Q +G  L       ++A  +  A P+ ++   I++D    Q +    + E  
Sbjct: 4   SVNIHRHLQRLGTFLIGITATCALAEPIIPAAPQLAATSYILMDAETGQVLVAHNEHEQM 63

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
            PASLTK+MT YI    +   +L L  +  VSK A     S+++++     T E  +  +
Sbjct: 64  PPASLTKLMTSYIAEREILEGRLELTDETLVSKKAWQMPGSRMFIEVGDLVTIEDLLRGV 123

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN---QITTAR 192
           I  S ND S A  E I+G+E  FA LM+  A+ +GM NT + NASGL  +N     ++A 
Sbjct: 124 IIVSGNDASVALAEHIAGTEDLFAQLMNKYAENLGMINTHFSNASGLPPENGQEHYSSAY 183

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRN-RIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           D A+L   L  +  ++Y  ++ R F+Y       N N+LL    ++DG+KTG+T  +G+ 
Sbjct: 184 DLALLSQALIYDNAEFYPLYAERSFKYGPVSAQPNRNRLLGTNPDVDGLKTGHTEEAGYC 243

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +  S       +++VVMG  +   R Q+  +L+T
Sbjct: 244 LAASAERDGMRLISVVMGTRSEDARAQETQKLLT 277


>gi|171704678|gb|ACB54658.1| D-ala-D-ala carboxypeptidase [Paenibacillus polymyxa]
          Length = 417

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 133/249 (53%), Gaps = 27/249 (10%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+I+ +  Q +     DEP  PAS+TKMMT YI+ E ++  KL    ++ V++ A+  
Sbjct: 43  SAILIEPSTGQVLLSMNPDEPLPPASMTKMMTEYIVAEQVKQGKLKWTDKVTVNENASKS 102

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L +    T E+  +A+   SAND + A  E +SG+E+ F  LM+  A+K+GM+N
Sbjct: 103 IGSRIFLAQGDQHTVEELYIAMAVGSANDATVALAERVSGTEQDFVKLMNETAQKMGMKN 162

Query: 174 TIYKNASGLH------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR- 220
           T + N++GL             D+  + TARD A L   + K+ P Y ++ +I+ +++R 
Sbjct: 163 TYFINSTGLDRKDMPTGFQPDTDRETVMTARDAATLAGYIIKDHPDYTRFTTIQSYKFRP 222

Query: 221 --NRIITNHNKLLNKMHNI-----------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
                I N+N +L +  NI           DG+KTG+T N+G     +       +++VV
Sbjct: 223 TDKAPIINYNWMLEENKNITNFRKFAYPGLDGMKTGHTNNAGNCFTGTAERNGMRLISVV 282

Query: 268 MGMPTSQER 276
           MG  +   R
Sbjct: 283 MGADSDAHR 291


>gi|330445965|ref|ZP_08309617.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding
           protein 5 [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490156|dbj|GAA04114.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding
           protein 5 [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 391

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 131/233 (56%), Gaps = 5/233 (2%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           +++D N  Q+   K  +E   PASLTK+MT Y+  + ++   +  +  + +S+ A  +N 
Sbjct: 42  VLMDYNTGQVLVEKNANEKLNPASLTKLMTSYVAGQEMKQGNISKDDVVVISRNAWARNF 101

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++++  +          LI +S ND S A  E ++GSE+ F  LM++ AKK+GM 
Sbjct: 102 PDSSKMFIEVGSEVPLMDLFRGLIIQSGNDASVAIAEHVAGSEQAFVGLMNSWAKKLGMN 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           ++ + N  GL   +  TT  D A+LG  L ++ P  Y  +S + F Y N    N N LL 
Sbjct: 162 SSHFANPHGLDHGDLYTTPYDIALLGQALIRDLPNIYPLYSEKSFTYNNITQRNRNGLLH 221

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +K  N+DG+KTGYT  +G+++ +S    D  ++AVVMG  +++ R+ ++  L+
Sbjct: 222 DKSMNVDGMKTGYTSGAGYSLTSSATEGDMRLIAVVMGTKSTKIRESESKALL 274


>gi|295695956|ref|YP_003589194.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM
           2912]
 gi|295411558|gb|ADG06050.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM
           2912]
          Length = 425

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 128/213 (60%), Gaps = 6/213 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +  E L+  ++ L+ ++  S+ AA+   S+++L+     T +  +  + 
Sbjct: 97  PASITKIMTMLLTVEALERGQVQLSDRVRTSERAASMGGSQIFLEPGEEMTLDDMMKGIA 156

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             SAND S A  E+++GSE +F  LM+ +A+++GM++T + N +GL  +   T+A D AI
Sbjct: 157 VASANDASVAVAEYLAGSEAEFVSLMNRRAEELGMRDTHFVNCNGLPAEGHYTSAYDIAI 216

Query: 197 LGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +   L K+ PQ  ++ S     +RK   R   + N NKL+     +DG+KTG+T ++ + 
Sbjct: 217 MSRELLKH-PQVLRWTSLYEDYLRKNTDRPFWLVNTNKLVRFYPGVDGLKTGFTESARYC 275

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +  + +  D  ++AVVMG PTS++R+ +  +++
Sbjct: 276 LSATAKKGDFRVIAVVMGEPTSKQRNAEVTQML 308


>gi|114770997|ref|ZP_01448437.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium
           HTCC2255]
 gi|114548279|gb|EAU51165.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium
           HTCC2255]
          Length = 382

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 124/230 (53%), Gaps = 1/230 (0%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++VID     +   K  + R P AS++K+MTL+++FE L+ +++ ++T+  VS+ A   
Sbjct: 29  SAMVIDQTTGTILMAKDADRRVPPASMSKLMTLFMLFEALRDERIAMDTEFLVSERATKI 88

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S ++L+E    +    I  +I +S ND      E I+G+E  FA  M+ +A ++GM N
Sbjct: 89  GGSTMFLREGERVSVRDLIQGIIVQSGNDACITVAENIAGTETAFADQMTKRAIELGMNN 148

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           + + N++G  D  Q  +ARD   +  ++   FP YY +F+   F +      N N LL  
Sbjct: 149 SSFGNSTGWPDPLQRMSARDLVTIANIIITEFPNYYPFFAQTSFTWDGVKQNNRNPLLPL 208

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
               DG+KTG+T  +G+ +V S R     I+ ++ G+ +   R  +A +L
Sbjct: 209 GIGADGLKTGHTNEAGYGLVGSARQGQRRIIFMITGLESKAARANEAEKL 258


>gi|311280463|ref|YP_003942694.1| Beta-lactamase [Enterobacter cloacae SCF1]
 gi|308749658|gb|ADO49410.1| Beta-lactamase [Enterobacter cloacae SCF1]
          Length = 399

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 136/253 (53%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  DE R PASLTKMMT Y+I + +++ K  
Sbjct: 33  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFK 89

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            +  + V   A AT NP     S ++LK        Q I  +  +S ND   A  ++++G
Sbjct: 90  DSDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYVAG 149

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+N    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 150 SQDAFVGLMNNYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYR 209

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +V+ VMG  T
Sbjct: 210 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLVSAVMGGRT 269

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 270 YKGRETESKKLLT 282


>gi|238755056|ref|ZP_04616404.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia ruckeri ATCC
           29473]
 gi|238706760|gb|EEP99129.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia ruckeri ATCC
           29473]
          Length = 403

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 145/272 (53%), Gaps = 17/272 (6%)

Query: 31  MGKILFLSIIMISMASELHAK------PKYSS---IVIDVNKNQMTG-FKQDEPRYPASL 80
           +G ++ +S   ++ A +++ K      P+  +   ++ID N  ++      D  R PASL
Sbjct: 15  LGTVIVISATSVANADDVNMKTMIPGVPQIDAEAYVLIDYNSGKVLAEMNADARRNPASL 74

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILA 134
           TKMMT Y+I + ++S K+     + V K A AT NP     S ++LK        +    
Sbjct: 75  TKMMTSYVIGQAIKSGKIGPEDMVTVGKDAWATGNPVFQGSSLMFLKPGDQVPVSKLTRG 134

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +  +S ND   A  ++++GS+  F  LM+N    +G++NT +K   GL  + Q ++ARD 
Sbjct: 135 INLQSGNDACVAMADYVAGSQDSFVNLMNNYVNALGLKNTHFKTVHGLDAEGQYSSARDM 194

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIV 253
           A++G  L ++ P  Y  +  ++F + N    N N LL +   N+DGIKTG+T  +G+N+V
Sbjct: 195 ALIGQALIRDVPDEYAIYKEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTDAAGYNLV 254

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            S       +++ V+G  T + R+ ++ +L+T
Sbjct: 255 ASATEGQMRLISAVLGGHTYKGRETESKKLLT 286


>gi|262173532|ref|ZP_06041209.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus MB-451]
 gi|261890890|gb|EEY36877.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus MB-451]
          Length = 378

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 124/215 (57%), Gaps = 8/215 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + ++   +H   Q+ +S  A  +   + SK++++  +Y        
Sbjct: 51  PASLTKLMTAYVAGQEMKRGNIHAEDQVRISNNAWAKKFPDSSKMFIEVGSYVNLMDLYR 110

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL + N  +T  D
Sbjct: 111 GLIVQSGNDASVAIAEHVAGSESAFVSLMNSWAQQLGMNNSSFANPHGLDNSNLYSTPYD 170

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK---LLNKMHNIDGIKTGYTRNSGF 250
            A+LG  + ++ P+ Y  +S   F Y    IT HN+   L ++  N+DG+KTGYT  +G+
Sbjct: 171 IALLGQAIIRDLPEIYPLYSELSFTYNG--ITQHNRNGLLRDRSMNVDGMKTGYTSGAGY 228

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           ++ +S    +  +++VVMG  + + R+ ++ +L++
Sbjct: 229 SLASSATSGEMRLISVVMGSKSVKIREAESKQLLS 263


>gi|325122968|gb|ADY82491.1| D-ala-D-ala-carboxypeptidase [Acinetobacter calcoaceticus PHEA-2]
          Length = 382

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 145/264 (54%), Gaps = 8/264 (3%)

Query: 45  ASELHAKPKY---SSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           A+ L A P+    S +++D    Q+   K ++E   PAS+TKMMT YII + L   +L  
Sbjct: 20  ATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMTKMMTSYIIEQKLLKGELTE 79

Query: 101 NTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           N Q+ ++++A    + + S +Y+      T  + +  +I +S ND S A  E I+G+E  
Sbjct: 80  NEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAGNEGT 139

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           FA +M+ +AK+IGM NT + N++G+  +   +TA+D A+L   + K+  +YY  +S ++F
Sbjct: 140 FAHMMNQEAKRIGMVNTQFINSTGMPAEGHYSTAKDMAVLAQHIIKDSSKYYPIYSEKEF 199

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER- 276
            +      N N LL    ++DG+KTG+T  +G+ + TS +     +++V+ G P+  ER 
Sbjct: 200 TFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLISVIFGTPSMSERA 259

Query: 277 DQKALELITSFLEKKTLKHQQTHR 300
           DQ    L   F   +T   Q  ++
Sbjct: 260 DQTRTLLAWGFANFETANVQPANQ 283


>gi|15601038|ref|NP_232668.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121587136|ref|ZP_01676912.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 2740-80]
 gi|121728082|ref|ZP_01681119.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V52]
 gi|147671927|ref|YP_001215796.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395]
 gi|153823905|ref|ZP_01976572.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33]
 gi|227811892|ref|YP_002811902.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae M66-2]
 gi|229506574|ref|ZP_04396083.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae BX 330286]
 gi|229510630|ref|ZP_04400110.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33]
 gi|229517239|ref|ZP_04406684.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC9]
 gi|229606053|ref|YP_002876757.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MJ-1236]
 gi|254850532|ref|ZP_05239882.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MO10]
 gi|298500115|ref|ZP_07009921.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MAK 757]
 gi|9657668|gb|AAF96181.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121548672|gb|EAX58722.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 2740-80]
 gi|121629630|gb|EAX62051.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V52]
 gi|126518573|gb|EAZ75796.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33]
 gi|146314310|gb|ABQ18850.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395]
 gi|227011034|gb|ACP07245.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae M66-2]
 gi|227014938|gb|ACP11147.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395]
 gi|229345275|gb|EEO10248.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC9]
 gi|229353075|gb|EEO18015.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33]
 gi|229356925|gb|EEO21843.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae BX 330286]
 gi|229372539|gb|ACQ62961.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MJ-1236]
 gi|254846237|gb|EET24651.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MO10]
 gi|297542096|gb|EFH78147.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MAK 757]
          Length = 389

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 132/237 (55%), Gaps = 16/237 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + ++   +H + Q+ +S  A  +   + SK++++  TY        
Sbjct: 62  PASLTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYR 121

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL +    +T  D
Sbjct: 122 GLIVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYD 181

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK---LLNKMHNIDGIKTGYTRNSGF 250
            A+LG  + ++ P+ Y  +S   F Y    IT HN+   L ++  N+DG+KTGYT  +G+
Sbjct: 182 IALLGRAIIRDLPEIYPLYSELSFTYNG--ITQHNRNGLLRDRSMNVDGMKTGYTSGAGY 239

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKDNL 304
           ++ +S    +  +++VVMG  + + R+ ++ +L++    F E  T      H+KD +
Sbjct: 240 SLASSATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVT-----PHQKDTV 291


>gi|296134797|ref|YP_003642039.1| Beta-lactamase [Thiomonas intermedia K12]
 gi|295794919|gb|ADG29709.1| Beta-lactamase [Thiomonas intermedia K12]
          Length = 413

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 130/236 (55%), Gaps = 6/236 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S +V+D+   Q+        +  PASLTK+MT Y+ F+ L+   + LN  +  SK A   
Sbjct: 65  SWLVVDLTSGQILAEHDAHAQEAPASLTKLMTAYLTFKALKEGTIKLNQMVTESKEAWQT 124

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S++++  +   +    +L +I +S ND +    + + GS   F  +M+ +A++ G++ 
Sbjct: 125 GGSRMFIDPRVPVSVNDLLLGMIVQSGNDAAMTLAQTVGGSVSAFVAMMNRQAQQWGLKG 184

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFP-QYYKYFSIRKFRYRNRIITNHNKLLN 232
           T + + +GL D    TTA D +I+   + ++FP  Y +YF +++F Y +    N   LL 
Sbjct: 185 THFMDPTGLPDPGHHTTAYDLSIIATHIIRDFPADYARYFKVKEFTYNHITQPNRVSLLF 244

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSL--RYKDDP--IVAVVMGMPTSQERDQKALELI 284
              ++DG+KTGYT  +G+ ++TS   ++ + P  ++ VVMG PT + R +++  L+
Sbjct: 245 TDPSVDGMKTGYTSEAGYCMITSAQRQFPNGPRRLLTVVMGTPTERARGEESQVLL 300


>gi|238757942|ref|ZP_04619124.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia aldovae ATCC
           35236]
 gi|238703927|gb|EEP96462.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia aldovae ATCC
           35236]
          Length = 397

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 132/239 (55%), Gaps = 12/239 (5%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           +++D N  ++      + R  PASLTK+M+ Y+I + L++ K+H +  + V K A AT N
Sbjct: 44  VLMDYNSGKILAEGNSDQRLDPASLTKIMSSYVIGQALKAGKVHPDDLVTVGKDAWATGN 103

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S ++LK             ++ +S ND S A  ++I+GS+  F  LM+N AK +
Sbjct: 104 PALRGSSLMFLKPGDQVRLSDLNKGIVIQSGNDASIALADYIAGSQDSFVGLMNNYAKAL 163

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+ NT +    GL    Q +TARD A+LG  L ++ P  Y     ++F +      N N+
Sbjct: 164 GLANTHFMTVHGLDAPGQYSTARDMAVLGQALIRDVPDEYALHKEKEFTFNKIRQINRNR 223

Query: 230 LLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDP--IVAVVMGMPTSQERDQKALELIT 285
           LL   + N+DG+KTG+T  +G N+V S    D P  +++VV+G P+ + R  ++ +L+T
Sbjct: 224 LLWSTNLNVDGMKTGFTTGAGHNLVAS--ATDGPMRLISVVLGAPSDRIRFNESEKLLT 280


>gi|153820129|ref|ZP_01972796.1| penicillin-binding protein 6 [Vibrio cholerae NCTC 8457]
 gi|255745929|ref|ZP_05419876.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholera CIRS 101]
 gi|262163513|ref|ZP_06031259.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae INDRE 91/1]
 gi|262168229|ref|ZP_06035927.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC27]
 gi|126509329|gb|EAZ71923.1| penicillin-binding protein 6 [Vibrio cholerae NCTC 8457]
 gi|255735683|gb|EET91081.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholera CIRS 101]
 gi|262023472|gb|EEY42175.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC27]
 gi|262028080|gb|EEY46739.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae INDRE 91/1]
          Length = 378

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 132/237 (55%), Gaps = 16/237 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + ++   +H + Q+ +S  A  +   + SK++++  TY        
Sbjct: 51  PASLTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYR 110

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL +    +T  D
Sbjct: 111 GLIVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYD 170

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK---LLNKMHNIDGIKTGYTRNSGF 250
            A+LG  + ++ P+ Y  +S   F Y    IT HN+   L ++  N+DG+KTGYT  +G+
Sbjct: 171 IALLGRAIIRDLPEIYPLYSELSFTYNG--ITQHNRNGLLRDRSMNVDGMKTGYTSGAGY 228

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKDNL 304
           ++ +S    +  +++VVMG  + + R+ ++ +L++    F E  T      H+KD +
Sbjct: 229 SLASSATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVT-----PHQKDTV 280


>gi|91224062|ref|ZP_01259325.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 12G01]
 gi|91190973|gb|EAS77239.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 12G01]
          Length = 390

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 71/213 (33%), Positives = 118/213 (55%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + + +  + LN ++ +S+ A  +N    SK++++  T  +      
Sbjct: 63  PASLTKLMTAYVAGQEINTGNITLNDEVVISRNAWAKNFPDSSKMFIEVNTSVSLSDLYR 122

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E+++GSE  F  LM++ A K+ + NT + N  GL      +T  D
Sbjct: 123 GLIVQSGNDASVAIAEYVAGSESGFVSLMNSWAAKLELSNTAFTNPHGLDSDGLYSTPYD 182

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A LG  + ++ P  Y  +S   F Y      N N LL ++  N+DG+KTGYT  +G+++
Sbjct: 183 IAKLGQAIIRDLPDIYPLYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYSL 242

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            TS    D  ++AVVMG  +   R+ ++ +L++
Sbjct: 243 ATSAIQGDMRLIAVVMGAKSENVRESESKQLLS 275


>gi|229526111|ref|ZP_04415515.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae bv. albensis
           VL426]
 gi|229336269|gb|EEO01287.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae bv. albensis
           VL426]
          Length = 389

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 132/237 (55%), Gaps = 16/237 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + ++   +H   Q+ +S  A  +   + SK++++  TY        
Sbjct: 62  PASLTKLMTSYVAGQEMKRGNIHAGDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYR 121

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL +    +T  D
Sbjct: 122 GLIVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYD 181

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK---LLNKMHNIDGIKTGYTRNSGF 250
            A+LG  + ++ P+ Y  +S   F Y    IT HN+   L ++  N+DG+KTGYT  +G+
Sbjct: 182 IALLGRAIIRDLPEIYPLYSELSFTYNG--ITQHNRNGLLRDRSMNVDGMKTGYTSGAGY 239

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKDNL 304
           ++ +S    +  +++VVMG  + + R+ ++ +L++    F E  T      H+KD++
Sbjct: 240 SLASSATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVT-----PHQKDSV 291


>gi|261343387|ref|ZP_05971032.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rustigianii
           DSM 4541]
 gi|282568528|gb|EFB74063.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rustigianii
           DSM 4541]
          Length = 401

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 128/223 (57%), Gaps = 11/223 (4%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + +++ K+     + VS+ A AT NP     S ++LK K  
Sbjct: 60  DERLDPASLTKIMTSYVVGQAVKAGKITPQDMVTVSEAAWATGNPVLKGSSLMFLKPKDQ 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       ++ +S ND S A  E+++GS++ F  LM++  +KIG+ NT +K   GL  +
Sbjct: 120 VSVLDLNKGIVIQSGNDASIALAEYVAGSQESFVDLMNSYVQKIGLTNTHFKTVHGLDSE 179

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGY 244
            Q +TARD A+L   L ++ P  Y     ++F + N    N N+LL   +  +DG+KTG+
Sbjct: 180 GQYSTARDMAVLAQALIRDVPDEYILHKEKEFTFNNIRQPNRNRLLWSQNLKVDGVKTGH 239

Query: 245 TRNSGFNIVTSLRYKDDP--IVAVVMGMPTSQERDQKALELIT 285
           T  +G N+V S    D P  +++VV+G P+ + R  ++ +L+T
Sbjct: 240 TSGAGHNLVAS--ATDGPMRLISVVLGAPSDKVRFSESEKLLT 280


>gi|145298088|ref|YP_001140929.1| Serine-type D-Ala-D-Ala carboxypeptidase [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142850860|gb|ABO89181.1| Serine-type D-Ala-D-Ala carboxypeptidase [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 396

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 138/254 (54%), Gaps = 13/254 (5%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +++  A E+ AK   + I+ID    Q +     DE   PASLTKMMT YII   L    +
Sbjct: 32  MVVPAAPEISAK---AHILIDYYSGQVLAEANADERLPPASLTKMMTSYIIGHELLEGNI 88

Query: 99  HLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                + +SK A ++N    SK++++     + +     +I +S ND   A  EF++GS 
Sbjct: 89  KNTDMVTISKNAWSKNYTDSSKMFIEVGKQVSVDDLNKGIIIQSGNDACVAMAEFLAGST 148

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             FA LM+  + K+GM++T +KN  GL ++   +TARD A LG  L  + P+ YK ++ +
Sbjct: 149 DSFASLMNAWSAKLGMKDTQFKNPHGLDEEGHYSTARDMARLGQALIHDQPEEYKIYAQK 208

Query: 216 KFRYRNRIITNHNK---LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMP 271
            F +    IT HN+   L ++   +DGIKTG+    G+N+V+S    +   ++AVV+G  
Sbjct: 209 SFVFNG--ITQHNRNRLLWDQSLQVDGIKTGHVSQVGYNLVSSATNNEGMRLIAVVLGAS 266

Query: 272 TSQERDQKALELIT 285
           +   R  ++ +L+T
Sbjct: 267 SEGSRAAESKKLLT 280


>gi|238795411|ref|ZP_04638926.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia mollaretii ATCC
           43969]
 gi|238720530|gb|EEQ12331.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia mollaretii ATCC
           43969]
          Length = 383

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 136/253 (53%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   + I+ID N  + +     D  R PASLTKMMT Y+I + +++ K+ 
Sbjct: 17  MIPGVPQIDAE---AYILIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGKIG 73

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V K A AT NP     S ++LK        +    +  +S ND   A  ++++G
Sbjct: 74  PEDMVTVGKDAWATGNPEFQGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAG 133

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+N    +G+QNT +K   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 134 SQDSFVNLMNNYVNALGLQNTHFKTVHGLDADGQFSSARDMALIGQALIRDVPDEYTIYK 193

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F + N    N N LL +   N+DGIKTG+T ++G+N+V S       +++ V+G  T
Sbjct: 194 EKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTASAGYNLVASATDGQMRLISAVLGGRT 253

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 254 YKGRETESKKLLT 266


>gi|241758793|ref|ZP_04756906.1| D-alanyl-D-alanine carboxypeptidase DacC [Neisseria flavescens
           SK114]
 gi|241321001|gb|EER57214.1| D-alanyl-D-alanine carboxypeptidase DacC [Neisseria flavescens
           SK114]
          Length = 405

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 128/235 (54%), Gaps = 2/235 (0%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           IV D++  Q +     D P  PA+LT+MMT Y+ F+ L++  L     + VS  A     
Sbjct: 59  IVTDLHSKQTLASNNADTPIEPAALTQMMTAYLAFKALENGTLEAGQMLTVSNAAWKVEG 118

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNT 174
           S+++L  K   +    I     +SAND +    E +  GS  +F   M+ +AK++GM++T
Sbjct: 119 SRMFLDPKVPVSVSSLIKGTTIQSANDAAITLAEALGNGSIDEFVKQMNEEAKRLGMKHT 178

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            + N +G+     ++T  D AIL   L  ++P+YY  F+ + F+Y N    N N LL + 
Sbjct: 179 HFNNPTGISSNGHVSTVGDLAILAAALINDYPKYYPLFANKSFKYNNIEQPNRNLLLYRD 238

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
            +IDG+KTGY+  +G+++  S +  +  IV+++ G  +++ R  ++ +L+   L+
Sbjct: 239 SSIDGLKTGYSEGAGYHLAASSKRNNRRIVSILAGAESTEARASESSKLLNWSLQ 293


>gi|293609746|ref|ZP_06692048.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828198|gb|EFF86561.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 397

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 145/264 (54%), Gaps = 8/264 (3%)

Query: 45  ASELHAKPKY---SSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           A+ L A P+    S +++D    Q+   K ++E   PAS+TKMMT YII + L   +L  
Sbjct: 35  ATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMTKMMTSYIIEQKLLKGELTE 94

Query: 101 NTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           N Q+ ++++A    + + S +Y+      T  + +  +I +S ND S A  E I+G+E  
Sbjct: 95  NEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAGNEGT 154

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           FA +M+ +AK+IGM NT + N++G+  +   +TA+D A+L   + K+  +YY  +S ++F
Sbjct: 155 FAHMMNQEAKRIGMVNTQFINSTGMPAEGHYSTAKDMAVLAQHIIKDSSKYYPIYSEKEF 214

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER- 276
            +      N N LL    ++DG+KTG+T  +G+ + TS +     +++V+ G P+  ER 
Sbjct: 215 TFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLISVIFGTPSMSERA 274

Query: 277 DQKALELITSFLEKKTLKHQQTHR 300
           DQ    L   F   +T   Q  ++
Sbjct: 275 DQTRTLLAWGFANFETANVQPANQ 298


>gi|213019298|ref|ZP_03335105.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|212995407|gb|EEB56048.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 310

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 112/201 (55%)

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MTLY+ F+YL++  + +  +  VS+ A  +  S ++LKE  + T ++ +  +   S ND 
Sbjct: 1   MTLYVAFDYLKAGIIKMEDKFRVSRKAWERKGSSMFLKEGQFVTVKELLEGITIASGNDA 60

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
             A  E I+GSE+ F   M+  A+ + + ++ + N+SG  D+N   +A+D   L   +  
Sbjct: 61  CIALAEGIAGSEENFVAEMNEVAQDLNLNDSHFVNSSGWPDENHFMSAKDLVTLAKRIFT 120

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           +FP+YY  FS +   Y + +  N N LL     +DG+KTG+T   G+ I+ S +  D  I
Sbjct: 121 DFPEYYDLFSEQYLTYNDIVQKNKNLLLFHDIGVDGLKTGHTSAGGYGIIVSAKRNDRRI 180

Query: 264 VAVVMGMPTSQERDQKALELI 284
            AVV G+ T +ER ++A  LI
Sbjct: 181 FAVVNGLDTEKERIEEAKRLI 201


>gi|226951361|ref|ZP_03821825.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           [Acinetobacter sp. ATCC 27244]
 gi|226837883|gb|EEH70266.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           [Acinetobacter sp. ATCC 27244]
          Length = 397

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/248 (31%), Positives = 137/248 (55%), Gaps = 7/248 (2%)

Query: 45  ASELHAKPKY---SSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           A+ L A P+    S +++D    Q+   K +DE   PAS+TKMMT +II + L   KL  
Sbjct: 35  ATVLSAPPELNNKSYVLMDYETGQILAAKNEDEKLAPASMTKMMTSFIIEQKLLQGKLTE 94

Query: 101 NTQIPVSKTAATQNPSK---LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           +  + ++++A  +  S    +Y+      T  + +  +I +S ND S A  E I+G+E  
Sbjct: 95  DEHVRMNESAWCRGSSAESCMYVPLNGTATVLEMLRGIIVQSGNDASKAMAEHIAGNEGT 154

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           FA +M+ +AK++GM NT + N++G+  +   +TA+D AIL   + K+  +YY  +S ++F
Sbjct: 155 FAHMMNQEAKRLGMTNTNFVNSTGMPAEGHYSTAKDMAILAQHIIKDSSKYYPIYSEKEF 214

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
            +      N N LL    ++DG+KTG+T  +GF + TS +     +++V+ G P+  ER 
Sbjct: 215 TFNGIKQGNRNALLYTDPSVDGLKTGHTSEAGFCLTTSSKRGPMRLISVIFGTPSMNERA 274

Query: 278 QKALELIT 285
            +   L+ 
Sbjct: 275 NQTRALLA 282


>gi|311280276|ref|YP_003942507.1| Beta-lactamase [Enterobacter cloacae SCF1]
 gi|308749471|gb|ADO49223.1| Beta-lactamase [Enterobacter cloacae SCF1]
          Length = 402

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 126/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + + + A AT NP     S ++LK    
Sbjct: 61  DEKLDPASLTKIMTSYVVGQALKAGKIKLTDSVTIGRDAWATGNPALRGSSVMFLKPGDQ 120

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            + E     +I +S ND S A  ++++GS+  F  LM++ A+K+G+ NT ++   GL   
Sbjct: 121 VSVEDLNKGVIIQSGNDASIAIADYVAGSQDSFVGLMNSYAQKLGLTNTTFQTVHGLDAP 180

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLL-NKMHNIDG 239
            Q +TARD A+L   +  + P  Y     K F+  K R  NR     N+LL N   N DG
Sbjct: 181 GQFSTARDMALLTRAMIHDVPDEYAIHKEKEFTFNKIRQPNR-----NRLLWNASLNADG 235

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V+S    D  ++AVV+G  T + R  ++ +L+T
Sbjct: 236 VKTGTTAGAGYNLVSSAIQGDMRLIAVVLGTKTDRIRFNESEKLLT 281


>gi|308187437|ref|YP_003931568.1| DD-carboxypeptidase, penicillin-binding protein 6B [Pantoea vagans
           C9-1]
 gi|308057947|gb|ADO10119.1| DD-carboxypeptidase, penicillin-binding protein 6B [Pantoea vagans
           C9-1]
          Length = 388

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 126/240 (52%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT 112
           S +++D    Q +T    DE R PASLTK+MT Y++   +  KK+  +  + V K A A 
Sbjct: 38  SWVLMDATTGQVLTAGNPDERRNPASLTKLMTGYVVDRAIDQKKISRDDMVTVGKDAWAA 97

Query: 113 QNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
            NP     S ++LK     +       +I  S ND   A  ++++GSE  F  +M++  +
Sbjct: 98  GNPVFKGSSLMFLKPGDKLSVRDLSRGVIIDSGNDACVALADYVAGSEANFVGMMNHYVE 157

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           K+G+QNT ++   GL    Q ++A D A L   +    P +Y  +S +   +      N 
Sbjct: 158 KLGLQNTHFETVHGLDAPGQYSSALDMAKLSRAIIDGEPDFYAMYSEKTLSWNGITQNNR 217

Query: 228 NKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N LL  N +H +DG+KTG+T  +GFNI+ S       ++AVVMG  + + R+++A +L+ 
Sbjct: 218 NGLLWDNNLH-VDGLKTGHTETAGFNIIASNVVGKHRLIAVVMGGKSPKGREEQARKLLV 276


>gi|294650880|ref|ZP_06728227.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292823298|gb|EFF82154.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 397

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 79/248 (31%), Positives = 137/248 (55%), Gaps = 7/248 (2%)

Query: 45  ASELHAKPKY---SSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           A+ L A P+    S +++D    Q+   K +DE   PAS+TKMMT +II + L   KL  
Sbjct: 35  ATVLSAPPELNNKSYVLMDYETGQILAAKNEDEKLAPASMTKMMTSFIIEQKLLQGKLTE 94

Query: 101 NTQIPVSKTAATQNPSK---LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           +  + ++++A  +  S    +Y+      T  + +  +I +S ND S A  E I+G+E  
Sbjct: 95  DEHVRMNESAWCRGSSAESCMYVPLNGTATVLEMLRGIIVQSGNDASKAMAEHIAGNEGT 154

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           FA +M+ +AK++GM NT + N++G+  +   +TA+D AIL   + K+  +YY  +S ++F
Sbjct: 155 FAHMMNQEAKRLGMTNTNFVNSTGMPAEGHYSTAKDMAILAQHIIKDSSKYYPIYSEKEF 214

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
            +      N N LL    ++DG+KTG+T  +GF + TS +     +++V+ G P+  ER 
Sbjct: 215 TFNGIKQGNRNALLYTDPSVDGLKTGHTSEAGFCLTTSSKRGPMRLISVIFGTPSMNERA 274

Query: 278 QKALELIT 285
            +   L+ 
Sbjct: 275 NQTRALLA 282


>gi|41218|emb|CAA29775.1| unnamed protein product [Escherichia coli K-12]
          Length = 400

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 125/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 59  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 119 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 178

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N DG
Sbjct: 179 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNEDG 233

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 234 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279


>gi|332097261|gb|EGJ02244.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella boydii 3594-74]
          Length = 268

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 119/215 (55%), Gaps = 17/215 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 59  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 119 VSVADLNKDVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 178

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 179 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 233

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           +KTG T  +G+N+V S    D  +++VV+G  T +
Sbjct: 234 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDR 268


>gi|260899720|ref|ZP_05908115.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus AQ4037]
 gi|308106862|gb|EFO44402.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus AQ4037]
          Length = 385

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 123/213 (57%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y++ + +++ +L  +  + VS+ A +      SK+++K K   +    + 
Sbjct: 57  PASLTKLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAKFPGSSKMFIKPKDEISVANLMR 116

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E ++GSE+ F  LM+  A+K+G+Q+T + N+ GL      T+  D
Sbjct: 117 GVIIQSGNDACVALAEHVAGSERGFVALMNGWAEKLGLQDTYFVNSHGLDSDGIQTSPTD 176

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A L   +  + P  Y  +S + F++ +    N NKLL +   ++DG KTGYT N+G+++
Sbjct: 177 MAKLMQSIISDVPDVYALYSEKVFKWNDITQYNRNKLLWDNSIDVDGGKTGYTSNAGYSL 236

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           V+S +     +++VVMG P+ Q R  ++  L++
Sbjct: 237 VSSAKEGRMRLISVVMGTPSKQARISQSKNLLS 269


>gi|153215272|ref|ZP_01949916.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 1587]
 gi|124114811|gb|EAY33631.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 1587]
          Length = 389

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 132/237 (55%), Gaps = 16/237 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + ++   +H + Q+ +S  A  +   + SK++++  TY        
Sbjct: 62  PASLTKLMTSYVAGQEMKRGNIHTDDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYR 121

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL +    +T  D
Sbjct: 122 GLIVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYD 181

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK---LLNKMHNIDGIKTGYTRNSGF 250
            A+LG  + ++ P+ Y  +S   F Y    IT HN+   L ++  N+DG+KTGYT  +G+
Sbjct: 182 IALLGRAIIRDLPEIYPLYSELSFTYNG--ITQHNRNGLLRDRSMNVDGMKTGYTSGAGY 239

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKDNL 304
           ++ +S    +  +++VVMG  + + R+ ++ +L++    F E  T      H+KD +
Sbjct: 240 SLASSATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVT-----PHQKDTV 291


>gi|90411493|ref|ZP_01219504.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum 3TCK]
 gi|90327706|gb|EAS44049.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum 3TCK]
          Length = 400

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 125/222 (56%), Gaps = 7/222 (3%)

Query: 71  QDEPR---YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT---QNPSKLYLKEKT 124
           ++ PR    PASLTK+MT Y++ + + +K+L  +  + V + A +    + SK+++K   
Sbjct: 52  ENNPRDALAPASLTKLMTAYVVGQEINTKRLKWDDMVTVGENAWSLKFPDSSKMFIKPGD 111

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
             + E  +  +I +S ND S A  E+I+GSE  F  LM+  AK + +Q+T + NA GL  
Sbjct: 112 EISVENLMRGVIIQSGNDASVALAEYIAGSESGFVNLMNGWAKTLKLQDTRFINAHGLDG 171

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTG 243
           +   T+  D A L   + ++ P  Y  +  ++F + +    N NKLL +K  N+DG KTG
Sbjct: 172 EGIQTSPADMATLMRHIIRDVPDVYALYQDKQFAWNDITQFNRNKLLWDKALNVDGGKTG 231

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           YT  +G+++V+S       ++AVVMG P+   R + +  L++
Sbjct: 232 YTEQAGYSLVSSATEGSRRLIAVVMGTPSQTIRAEASKNLLS 273


>gi|153839337|ref|ZP_01992004.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus
           AQ3810]
 gi|149747147|gb|EDM58135.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus
           AQ3810]
          Length = 385

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 123/213 (57%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y++ + +++ +L  +  + VS+ A +      SK+++K K   +    + 
Sbjct: 57  PASLTKLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAKFPGSSKMFIKPKDEISVANLMR 116

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E ++GSE+ F  LM+  A+K+G+Q+T + N+ GL      T+  D
Sbjct: 117 GVIIQSGNDACVALAEHVAGSERGFVALMNGWAEKLGLQDTYFVNSHGLDSDGIQTSPTD 176

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A L   +  + P  Y  +S + F++ +    N NKLL +   ++DG KTGYT N+G+++
Sbjct: 177 MAKLMQSIISDVPDVYALYSEKVFKWNDITQYNRNKLLWDNSIDVDGGKTGYTSNAGYSL 236

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           V+S +     +++VVMG P+ Q R  ++  L++
Sbjct: 237 VSSAKEGRMRLISVVMGTPSKQARISQSKNLLS 269


>gi|28901449|ref|NP_801104.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260363002|ref|ZP_05775871.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus K5030]
 gi|260880289|ref|ZP_05892644.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus AN-5034]
 gi|260896672|ref|ZP_05905168.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus Peru-466]
 gi|28809996|dbj|BAC62937.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308085410|gb|EFO35105.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus Peru-466]
 gi|308091912|gb|EFO41607.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus AN-5034]
 gi|308112244|gb|EFO49784.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus K5030]
          Length = 385

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 123/213 (57%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y++ + +++ +L  +  + VS+ A +      SK+++K K   +    + 
Sbjct: 57  PASLTKLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAKFPGSSKMFIKPKDEISVANLMR 116

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E ++GSE+ F  LM+  A+K+G+Q+T + N+ GL      T+  D
Sbjct: 117 GVIIQSGNDACVALAEHVAGSERGFVALMNGWAEKLGLQDTYFVNSHGLDSDGIQTSPTD 176

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A L   +  + P  Y  +S + F++ +    N NKLL +   ++DG KTGYT N+G+++
Sbjct: 177 MAKLMQSIISDVPDVYALYSEKVFKWNDITQYNRNKLLWDNSIDVDGGKTGYTSNAGYSL 236

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           V+S +     +++VVMG P+ Q R  ++  L++
Sbjct: 237 VSSAKEGRMRLISVVMGTPSKQARISQSKNLLS 269


>gi|193071481|ref|ZP_03052393.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019]
 gi|192955203|gb|EDV85694.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019]
          Length = 388

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQYSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 209

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 210 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 269

Query: 279 KALELI 284
           +A +L+
Sbjct: 270 EARKLL 275


>gi|328469382|gb|EGF40328.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus 10329]
          Length = 385

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 123/213 (57%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y++ + +++ +L  +  + VS+ A +      SK+++K K   +    + 
Sbjct: 57  PASLTKLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAKFPGSSKMFIKPKDEISVANLMR 116

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E ++GSE+ F  LM+  A+K+G+Q+T + N+ GL      T+  D
Sbjct: 117 GVIIQSGNDACVALAEHVAGSERGFVALMNGWAEKLGLQDTYFVNSHGLDSDGIQTSPTD 176

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A L   +  + P  Y  +S + F++ +    N NKLL +   ++DG KTGYT N+G+++
Sbjct: 177 MAKLMQSIISDVPDVYALYSEKVFKWNDITQYNRNKLLWDNSIDVDGGKTGYTSNAGYSL 236

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           V+S +     +++VVMG P+ Q R  ++  L++
Sbjct: 237 VSSAKEGRMRLISVVMGTPSKQARISQSKNLLS 269


>gi|325276744|ref|ZP_08142459.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas sp. TJI-51]
 gi|324098127|gb|EGB96258.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas sp. TJI-51]
          Length = 386

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 148/286 (51%), Gaps = 13/286 (4%)

Query: 27  NIQLMGKILFLSIIMI----SMASE--LHAKPKYSS---IVIDVNK-NQMTGFKQDEPRY 76
           NI  + K L L ++++    + A+E    A P+ ++   +++D +  N +     DE   
Sbjct: 2   NITNLAKRLCLPVLLLITPAAFAAEQMTPAPPQLAAKSYVLMDASSGNVLVENNGDERLP 61

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT YI    ++  ++  N  + VS+ A     S++++K  +  T    +  +I
Sbjct: 62  PASLTKLMTAYIATLDIRRGQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGII 121

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E I+GSE  FA +M+  A  +GM N+ + N +GL + +  ++A D A+
Sbjct: 122 IQSGNDASVALSEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPNPDHYSSAHDMAV 181

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   +    P +Y  +S ++F + N    N N LL +   +DG+KTG+T  +G+ +V S 
Sbjct: 182 LARAIINVDPAHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTEEAGYCMVASA 241

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTH 299
                 ++AVV G  + Q R  +  +L+T    F E +T   + T 
Sbjct: 242 VRDGQRLIAVVFGTNSEQARAAETQKLLTYGFRFFETQTFYQKGTE 287


>gi|218690072|ref|YP_002398284.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli ED1a]
 gi|218427636|emb|CAR08547.2| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli ED1a]
          Length = 388

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 209

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  NIDG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 210 NGITQQNRNGLLWDKTMNIDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 269

Query: 279 KALELI 284
           +A +L+
Sbjct: 270 EARKLL 275


>gi|323968145|gb|EGB63554.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli M863]
          Length = 388

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVGRAIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 209

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 210 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 269

Query: 279 KALELI 284
           +A +L+
Sbjct: 270 EARKLL 275


>gi|91223153|ref|ZP_01258419.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 12G01]
 gi|91191966|gb|EAS78229.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 12G01]
          Length = 385

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 123/213 (57%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y++ + +++ +L  +  + VS+ A +      SK+++K K   +    + 
Sbjct: 57  PASLTKLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAKFPGSSKMFIKPKDEISVANLMR 116

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E ++GSE+ F  LM+  A+K+G+Q+T + N+ GL      T+  D
Sbjct: 117 GVIIQSGNDACVALAEHVAGSERGFVALMNGWAEKLGLQDTYFVNSHGLDSDGIQTSPTD 176

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A L   +  + P  Y  +S + F++ +    N NKLL +   ++DG KTGYT N+G+++
Sbjct: 177 MARLMQSIISDVPDVYALYSEKVFKWNDITQYNRNKLLWDNSIDVDGGKTGYTSNAGYSL 236

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           V+S +     +++VVMG P+ Q R  ++  L++
Sbjct: 237 VSSAKEGRMRLISVVMGTPSKQARISQSKNLLS 269


>gi|218695635|ref|YP_002403302.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli 55989]
 gi|218352367|emb|CAU98141.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli 55989]
          Length = 388

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  EIHAG---SWVLMDYTTGQILTAVNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 209

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 210 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 269

Query: 279 KALELI 284
           +A +L+
Sbjct: 270 EARKLL 275


>gi|15838821|ref|NP_299509.1| penicillin binding protein 6 precursor [Xylella fastidiosa 9a5c]
 gi|9107379|gb|AAF85029.1|AE004035_8 penicillin binding protein 6 precursor [Xylella fastidiosa 9a5c]
          Length = 396

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 130/228 (57%), Gaps = 14/228 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA------ATQNPSKLYLKEKT--YFTT 128
           PASLTK+MT Y+I   +++ K+H + Q+ +++ A       T      +   KT      
Sbjct: 69  PASLTKVMTSYVIAAEIKNGKVHRDDQVMMTENAWRKGGAGTDGSYSGFPVNKTARLEDM 128

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           EQG   +I +S ND + A  E ++GSE+ FA LM++ A++IGM+N+ + +A+GL  +   
Sbjct: 129 EQG---MIVQSGNDAAIALAEHVAGSEEAFASLMNSYAQRIGMKNSHFVDATGLSAEGHY 185

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
           ++A D A+LG  L ++ P+ Y Y  +++        +N N LL +  ++DGIKTG+T  +
Sbjct: 186 SSAYDMALLGRALIRDSPETYAYNKVKELVVNGIKQSNRNLLLWRDPSVDGIKTGHTSEA 245

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTL 293
           G+ I+ S +  D  I+ VVMG  + ++R + +L L+     F E  TL
Sbjct: 246 GYCIINSAKRGDQRILTVVMGDVSEKKRAEDSLALLNWGFRFFETHTL 293


>gi|269965808|ref|ZP_06179903.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B]
 gi|269829543|gb|EEZ83782.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B]
          Length = 385

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 123/213 (57%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y++ + +++ +L  +  + VS+ A +      SK+++K K   +    + 
Sbjct: 57  PASLTKLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAKFPGSSKMFIKPKDEISVANLMR 116

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E ++GSE+ F  LM+  A+K+G+Q+T + N+ GL      T+  D
Sbjct: 117 GVIIQSGNDACVALAEHVAGSERGFVALMNGWAEKLGLQDTYFVNSHGLDSDGIQTSPTD 176

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A L   +  + P  Y  +S + F++ +    N NKLL +   ++DG KTGYT N+G+++
Sbjct: 177 MAKLMQSIISDVPDVYALYSEKVFKWNDITQYNRNKLLWDNSIDVDGGKTGYTSNAGYSL 236

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           V+S +     +++VVMG P+ Q R  ++  L++
Sbjct: 237 VSSAKEGRMRLISVVMGTPSKQARISQSKNLLS 269


>gi|261212803|ref|ZP_05927087.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC341]
 gi|260837868|gb|EEX64545.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC341]
          Length = 378

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 131/235 (55%), Gaps = 12/235 (5%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + ++   +H + Q+ +S  A  +   + SK++++  TY        
Sbjct: 51  PASLTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYR 110

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GSE  F  LM++ A ++GM N+ + N  GL + N  +T  D
Sbjct: 111 GLIVQSGNDASVAIAEHVAGSEGAFVSLMNSWALQLGMNNSSFANPHGLDNPNLYSTPYD 170

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A+LG  + ++ P+ Y  +S   F Y      N N LL ++  N+DG+KTGYT  +G+++
Sbjct: 171 IALLGQAIIRDLPEIYTLYSEPSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYSL 230

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKDNL 304
            +S    +  +++VVMG  + + R+ ++ +L++    F E  +      H+KD++
Sbjct: 231 ASSATSGEMRLISVVMGAKSVKIREAESKQLLSYGFRFFETVS-----PHQKDSV 280


>gi|238784923|ref|ZP_04628922.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia bercovieri ATCC
           43970]
 gi|238714138|gb|EEQ06151.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia bercovieri ATCC
           43970]
          Length = 401

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 143/264 (54%), Gaps = 15/264 (5%)

Query: 35  LFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIF 90
           L L  +  + A++  A P   +   +++D N  ++      + R  PASLTK+M+ Y+I 
Sbjct: 19  LLLLALPTAHAADDPAVPPVDAKAYVLMDYNSGKVLAEANGDQRLDPASLTKIMSSYVIG 78

Query: 91  EYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVS 144
           + +++ K+H +  + V K A AT NP     S ++LK             ++ +S ND S
Sbjct: 79  QAIKAGKVHPDDLVTVGKDAWATGNPALRGSSLMFLKPGDQVKLSDLNKGIVIQSGNDAS 138

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  ++++GS+  F  LM+N AK +G+ NT +    GL    Q +TARD A+LG  L ++
Sbjct: 139 IALADYVAGSQDSFVGLMNNYAKALGLTNTNFMTVHGLDAPGQYSTARDMAVLGQALIRD 198

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP- 262
            P+ Y     ++F +      N N+LL N   N+DG+KTG+T  +G N+V S    D P 
Sbjct: 199 VPEEYALHKEKEFTFNMIRQINRNRLLWNTNLNVDGMKTGFTTGAGHNLVAS--ATDGPM 256

Query: 263 -IVAVVMGMPTSQERDQKALELIT 285
            +++VV+G P+ + R  ++ +L++
Sbjct: 257 RLISVVLGAPSDRVRFSESEKLLS 280


>gi|323152399|gb|EFZ38687.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli EPECa14]
          Length = 390

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 136/246 (55%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 35  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRTIDSHRITPDDIVT 91

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 92  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 151

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +  + P++Y  +S +   +
Sbjct: 152 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHDEPEFYHMYSEKSLTW 211

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 212 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 271

Query: 279 KALELI 284
           +A +L+
Sbjct: 272 EARKLL 277


>gi|260855992|ref|YP_003229883.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O26:H11 str.
           11368]
 gi|257754641|dbj|BAI26143.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O26:H11 str.
           11368]
          Length = 388

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 136/246 (55%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRTIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +  + P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHDEPEFYHMYSEKSLTW 209

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 210 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 269

Query: 279 KALELI 284
           +A +L+
Sbjct: 270 EARKLL 275


>gi|28875449|gb|AAO59939.1| DacD [uncultured bacterium]
          Length = 421

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 133/251 (52%), Gaps = 8/251 (3%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +S A +  A    + +++D    Q +T   + + R PASLTK+MT Y++   + SK++  
Sbjct: 58  VSFAPQPPAITAGAWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSKRISP 117

Query: 101 NTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
              + V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G 
Sbjct: 118 TDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGG 177

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           + +F  +M+N A+K+ +Q+T ++   GL    Q ++A D A+L   +    P +Y  +S 
Sbjct: 178 QPQFVAMMNNYAQKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPDFYHMYSE 237

Query: 215 RKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           +   +      N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  ++
Sbjct: 238 KSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAESA 297

Query: 274 QERDQKALELI 284
           + R+ +A +L+
Sbjct: 298 KGREDQARKLL 308


>gi|303248189|ref|ZP_07334453.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio
           fructosovorans JJ]
 gi|302490453|gb|EFL50362.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio
           fructosovorans JJ]
          Length = 359

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 109/194 (56%), Gaps = 1/194 (0%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK++TLYIIF+ ++  KLH    + VS+ AA+Q  S + L+        + I  + 
Sbjct: 118 PASLTKILTLYIIFDAIRQGKLHPWDVVEVSQRAASQGGSNMRLRAGESVKVTELIKGIA 177

Query: 137 TRSANDVSTAFGEFI-SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
             SAND   A  E++ +G+   F  +M++ A+++GM  + + N +GL    Q+TTARD  
Sbjct: 178 VASANDACMAMAEYLENGNPDAFVNVMNDTAQRLGMTRSRFMNPNGLPADGQVTTARDML 237

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
            L     + FP+     S++ F + NR   N N LL +    DG+KTG+   SG+NI+ +
Sbjct: 238 RLASAYLEQFPKALTIHSMQFFTHNNRQRHNANALLGRYEGADGLKTGFVCASGYNIIAT 297

Query: 256 LRYKDDPIVAVVMG 269
            +  D  ++ VV+G
Sbjct: 298 AKRGDTRLIGVVLG 311


>gi|268590223|ref|ZP_06124444.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rettgeri DSM
           1131]
 gi|291314506|gb|EFE54959.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rettgeri DSM
           1131]
          Length = 401

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 146/271 (53%), Gaps = 21/271 (7%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTL 86
           +G  L +++   + A++    P+  +   +++D N  + +     DE   PASLTK+MT 
Sbjct: 15  IGLSLLVAVSTSAYAAQTPVAPQVDAKAFVLMDYNSGKILASGNPDERLDPASLTKIMTS 74

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSA 140
           Y+I + + + K+     + V + A AT NP     S ++LK K   +       ++ +S 
Sbjct: 75  YVIGQAVNAGKITPQDMVTVGEDAWATGNPVLKGSSLMFLKPKDRVSVLDLNKGIVIQSG 134

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND S A  ++++GS+  F  LM+   +KIG++NT +K   GL  + Q +TARD A+L   
Sbjct: 135 NDASIALADYVAGSQDSFVSLMNQYVQKIGLKNTHFKTVHGLDSEGQYSTARDMALLTQA 194

Query: 201 LRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVT 254
           + ++ P  Y     K F+  K R  NR     N+LL N+   +DG+KTG+T  +G N+V 
Sbjct: 195 MIRDVPDEYALHKEKEFTFNKIRQPNR-----NRLLWNQNLKVDGVKTGHTSGAGHNLVA 249

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           S    D  +++VV+G P+ + R  ++ +L+T
Sbjct: 250 SATEGDMRLISVVLGAPSDRVRFSESEKLLT 280


>gi|238789672|ref|ZP_04633455.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia frederiksenii
           ATCC 33641]
 gi|238722225|gb|EEQ13882.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia frederiksenii
           ATCC 33641]
          Length = 401

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 125/223 (56%), Gaps = 11/223 (4%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           D+   PASLTK+M+ Y+I + +++ K+H +  + V K A AT NP     S ++LK    
Sbjct: 60  DQRLDPASLTKIMSSYVIGQAIKAGKVHPDDLVTVGKDAWATGNPALRGSSLMFLKPGDQ 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
                    ++ +S ND S A  ++I+GS+  F  LM+N AK +G+ NT +    GL   
Sbjct: 120 VKLSDLNKGIVIQSGNDASIALADYIAGSQDSFVGLMNNYAKALGLNNTNFMTVHGLDAP 179

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGY 244
            Q +TA D A+LG  L ++ P+ Y     ++F +      N N+LL N   N+DG+KTGY
Sbjct: 180 GQYSTAHDMAVLGQALIRDVPEEYALHKEKEFTFNKIRQINRNRLLWNTNLNVDGMKTGY 239

Query: 245 TRNSGFNIVTSLRYKDDP--IVAVVMGMPTSQERDQKALELIT 285
           T  +G N+V S    D P  +++VV+G P+ + R  ++ +L+T
Sbjct: 240 TTGAGHNLVASA--TDGPMRLISVVLGAPSDRVRFSESEKLLT 280


>gi|152969235|ref|YP_001334344.1| D-alanyl-D-alanine carboxypeptidase fraction A [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238893699|ref|YP_002918433.1| D-alanyl-D-alanine carboxypeptidase fraction A [Klebsiella
           pneumoniae NTUH-K2044]
 gi|150954084|gb|ABR76114.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding
           protein 5 [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238546015|dbj|BAH62366.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 399

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 135/253 (53%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI  A ++ A+   S I+ID N  ++      D  R PASLTKMMT Y+I + +++ K  
Sbjct: 33  MIPGAPQIDAE---SWILIDYNSGKVLAENNADSRRDPASLTKMMTSYVIGQAMKAGKFK 89

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            +  + V   A AT NP     S ++LK        Q I  +  +S ND   A  ++++G
Sbjct: 90  ESDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYVAG 149

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+N    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 150 SQDAFVSLMNNYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYR 209

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 210 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 269

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 270 FKGRESESKKLLT 282


>gi|15614098|ref|NP_242401.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
           [Bacillus halodurans C-125]
 gi|10174152|dbj|BAB05254.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
           [Bacillus halodurans C-125]
          Length = 387

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 136/241 (56%), Gaps = 7/241 (2%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           AK   S+IVI+ +  Q+   K  DE   PAS+TK+MTL +I E + S K+  +  +  S+
Sbjct: 32  AKEASSAIVIERDTGQVLFEKNSDEKLPPASMTKIMTLLLIMEAIDSGKITYDDMVRTSE 91

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     +    I A+   S ND S A  E ++G+E++F  +M+ KA++
Sbjct: 92  NAASMGGSQVFLEPGEEMSVRDMIKAIAIASGNDASVAMAEHLAGTEEEFVGMMNEKARQ 151

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRK-----NFPQYYKYFSIRKFRYRNRI 223
           +G++NT + N +GL +K+  T+A D A++   L K      F   Y+ + +RK   +   
Sbjct: 152 LGLKNTNFVNTNGLPEKDHYTSAYDLAMISKELLKYEDITEFTSVYEDY-LRKGTDKEFW 210

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           + N N+L+     +DG+KTG+T+ + + +  +       ++ VVMG PT +ER+ +  E+
Sbjct: 211 LVNTNRLVKFYPGVDGLKTGFTKEAKYCLTATAVKNGMRVITVVMGAPTPKERNSQITEM 270

Query: 284 I 284
           +
Sbjct: 271 L 271


>gi|325929151|ref|ZP_08190294.1| penicillin-binding protein 6 [Xanthomonas perforans 91-118]
 gi|325540470|gb|EGD12069.1| penicillin-binding protein 6 [Xanthomonas perforans 91-118]
          Length = 401

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 128/225 (56%), Gaps = 8/225 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL--- 133
           PAS+TK+MT Y++   +++ K+  + Q+ +S+ A  +  +        +   +   L   
Sbjct: 74  PASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWREGGAGTDGSYSGFPVNQTARLEDM 133

Query: 134 --ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
              +  +S ND + A  E ++GSE+ FA LM++ A KIGM+++ + NA GL  +   +TA
Sbjct: 134 EKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKIGMKDSYFVNAHGLSAEGHHSTA 193

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            D A+LG  + +++P+ Y Y  I++F+      +N N+LL +   +DGIKTG+T  +G+ 
Sbjct: 194 YDLALLGRAMVRDYPETYAYNKIKEFQVGTIKQSNRNRLLWRDSAVDGIKTGHTSEAGYC 253

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTL 293
           +++S +  D  ++AVVMG  + ++R   +L L+     F E  +L
Sbjct: 254 LLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNWGFRFFETHSL 298


>gi|256022304|ref|ZP_05436169.1| D-alanyl-D-alanine carboxypeptidase [Escherichia sp. 4_1_40B]
          Length = 388

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 136/246 (55%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA+   S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  EIHAE---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 209

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 210 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 269

Query: 279 KALELI 284
           +A +L+
Sbjct: 270 EAKKLL 275


>gi|152996856|ref|YP_001341691.1| Serine-type D-Ala-D-Ala carboxypeptidase [Marinomonas sp. MWYL1]
 gi|150837780|gb|ABR71756.1| Serine-type D-Ala-D-Ala carboxypeptidase [Marinomonas sp. MWYL1]
          Length = 382

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 120/225 (53%), Gaps = 3/225 (1%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D+   PASLTK+MT YII   L    L L+ ++ +S+ A     S+++++E T    E  
Sbjct: 54  DQALPPASLTKLMTAYIIEYELARGNLSLDDKVNISEKAWRMEGSRMFIREGTQVKLEDL 113

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +I +S ND S A  E I+GSE  FA LM+  A+ +GM N+ + NA+G   ++  ++A
Sbjct: 114 MRGIIIQSGNDASVAAAEHIAGSESAFADLMNQHAQLLGMTNSHFVNATGFPAEDHYSSA 173

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            D A L       FP+ Y  ++ ++F Y N    N NKLL +   +DG+KTG+T  +GF 
Sbjct: 174 HDIAKLARATILQFPENYSMYAEKEFTYNNIRQPNRNKLLWRDKTVDGMKTGHTEAAGFC 233

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKKTL 293
           +  S       ++ VVMG  +   R    QK L+    + E + L
Sbjct: 234 LAASAVRNGTRLITVVMGTKSDTARAIESQKLLDYGFRYYETRKL 278


>gi|83593039|ref|YP_426791.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodospirillum rubrum
           ATCC 11170]
 gi|83575953|gb|ABC22504.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodospirillum rubrum
           ATCC 11170]
          Length = 388

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 126/236 (53%), Gaps = 6/236 (2%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---- 110
           ++VID++ + +   K  D P  P+S++K+MT Y++FE L+S  L L+    VS+ A    
Sbjct: 33  ALVIDLDTDTVLLDKDADVPMPPSSMSKLMTAYMLFERLKSGSLSLDDTFSVSENAWRKG 92

Query: 111 -ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            A    S ++L           +  +I +S ND      E ++G E  FA  M+ +AK++
Sbjct: 93  GAASGGSTMFLNPGAQVKVHDLMRGIIIQSGNDACVVVAENLAGDEATFAAAMNRRAKEL 152

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+ N+ + NA+GL D     TA D  +L   + ++FP++Y+ +   KF Y   +  N N 
Sbjct: 153 GLTNSHFVNATGLPDPEHYMTAHDLVLLAEHIIRDFPEFYEIYGETKFTYNGIVQHNRNP 212

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL      DG+KTG+T  +GF +  S       ++ V+ G+ +++ER ++A  L++
Sbjct: 213 LLYMNMGADGLKTGHTNIAGFGLTASAVQDGRRLLMVINGLQSNKERSEEAERLMS 268


>gi|119504244|ref|ZP_01626324.1| D-alanyl-D-alanine carboxypeptidase [marine gamma proteobacterium
           HTCC2080]
 gi|119459752|gb|EAW40847.1| D-alanyl-D-alanine carboxypeptidase [marine gamma proteobacterium
           HTCC2080]
          Length = 386

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 122/216 (56%), Gaps = 11/216 (5%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYL---KEKTYFTT 128
           PASLTK+MT YI+ E + + +L L+ ++ VS+ A +QNP     S +++   K  T    
Sbjct: 57  PASLTKLMTSYILAEEVDAGRLSLDDEVTVSRNAWSQNPKFRGSSLMWIEPGKSVTVGEL 116

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           EQGI      S ND + A  E I+GSE+ F  LM+  A+++ +  T ++N  GL + + +
Sbjct: 117 EQGI---AISSGNDATVAIAEHIAGSEEAFVALMNRYAEELALTATHFENTHGLPNSDHL 173

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
           TTARD   L I   ++ P  Y+ +  + + Y +    N N LL +  ++DG+KTGYT  +
Sbjct: 174 TTARDLGSLAIATIRDHPDRYRVYRQQSYTYNDITQYNRNHLLREDPSVDGLKTGYTSVA 233

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           G+ +V S   +   +++VV+G  +++ R  +   L+
Sbjct: 234 GYGLVASAEREGMRLISVVLGSNSTRSRKAETRSLL 269


>gi|310639559|ref|YP_003944317.1| d-ala-d-ala carboxypeptidase [Paenibacillus polymyxa SC2]
 gi|309244509|gb|ADO54076.1| D-ala-D-ala carboxypeptidase [Paenibacillus polymyxa SC2]
          Length = 462

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 132/249 (53%), Gaps = 27/249 (10%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+I+ +  Q +     DEP  PAS+TKMMT YI+ E ++  KL    ++ V++ A+  
Sbjct: 72  SAILIEPSTGQVLLSMNPDEPLPPASMTKMMTEYIVAEQVKQGKLKWTDKVTVNENASKS 131

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L +    T E+  +A+   SAND + A  E +SG+E+ F  LM+  A+++GM+N
Sbjct: 132 IGSRIFLAQGDQHTVEELYIAMAVGSANDATVALAERVSGTEQDFVKLMNETAQRMGMKN 191

Query: 174 TIYKNASGLH------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR- 220
           T + N++GL             D+  + TARD A L   + K+ P Y ++ +I+ +++R 
Sbjct: 192 TYFINSTGLDRKDMPTGFQPDTDRETVMTARDAATLAGYIIKDHPDYTRFTTIQSYKFRP 251

Query: 221 --NRIITNHNKLLNKMHNI-----------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
                I N+N +L    NI           DG+KTG+T N+G     +       +++VV
Sbjct: 252 TDKAPIINYNWMLEANKNITNFRKFAYPGLDGMKTGHTANAGNCFTGTAERNGMRLISVV 311

Query: 268 MGMPTSQER 276
           MG  +   R
Sbjct: 312 MGADSDAHR 320


>gi|89074850|ref|ZP_01161304.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium sp. SKA34]
 gi|89049425|gb|EAR54987.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium sp. SKA34]
          Length = 459

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 118/216 (54%), Gaps = 3/216 (1%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           I+ID N  ++        R  PAS TK+M +YI+ + L    + L++++ V + A     
Sbjct: 107 ILIDANTGRIVASNNANMRMAPASTTKLMLMYIVEQKLADGVISLDSKVLVPEVAWRTGG 166

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S+++LK  +Y + +  I  +I  S ND +     +++GS+  F  +M+  A K+GM NT 
Sbjct: 167 SRMFLKPGSYVSVKDLIQGVIVESGNDAAVTLANYVAGSQSSFVSMMNATAVKLGMHNTH 226

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           +    GL      +TA D  +LG  +  ++PQY+ +FS + F Y +    N N+LL    
Sbjct: 227 FTTVMGLPAPAHFSTAYDLGLLGQHIMNDYPQYFHFFSQKYFEYNHIRQPNFNRLLFTYQ 286

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDP--IVAVVMG 269
              G+KTG T  +G+++V+S +  D+P  +VAVV+G
Sbjct: 287 YATGMKTGSTEAAGYSLVSSAKMPDNPMKLVAVVLG 322


>gi|225076059|ref|ZP_03719258.1| hypothetical protein NEIFLAOT_01091 [Neisseria flavescens
           NRL30031/H210]
 gi|224952619|gb|EEG33828.1| hypothetical protein NEIFLAOT_01091 [Neisseria flavescens
           NRL30031/H210]
          Length = 405

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 128/235 (54%), Gaps = 2/235 (0%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           IV D++  Q +     D P  PA+LT+MMT Y+ F+ L++  L  +  + VS        
Sbjct: 59  IVTDLHSKQTLASNNADTPIEPAALTQMMTAYLAFKALENGTLQADQMLTVSNVGWKVEG 118

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNT 174
           S+++L  K   +    I     +SAND +    E +  GS  +F   M+ +AK++GM++T
Sbjct: 119 SRMFLNPKVPVSVSSLIKGTTIQSANDAAITLAEALGNGSVDEFVKQMNEEAKRLGMKHT 178

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            + N +G+     ++T  D AIL   L  ++P+YY  F+ + F+Y N    N N LL + 
Sbjct: 179 HFNNPTGISSNGHVSTVGDLAILAAALINDYPKYYPLFANKSFKYNNIEQPNRNLLLYRD 238

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
            +IDG+KTGY+  +G+++  S +  +  IV+++ G  +++ R  ++ +L+   L+
Sbjct: 239 SSIDGLKTGYSEGAGYHLAASSKRNNRRIVSILAGAESTEARASESSKLLNWSLQ 293


>gi|71274450|ref|ZP_00650738.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Dixon]
 gi|71900446|ref|ZP_00682578.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Ann-1]
 gi|71164182|gb|EAO13896.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Dixon]
 gi|71729811|gb|EAO31910.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Ann-1]
          Length = 347

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 130/228 (57%), Gaps = 14/228 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA------ATQNPSKLYLKEKT--YFTT 128
           PASLTK+MT Y+I   +++ K+H + Q+ +++ A       T      +   KT      
Sbjct: 20  PASLTKVMTSYVIAAEIKNGKVHRDDQVMMTENAWRKGGAGTDGSYSGFPVNKTARLEDM 79

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           EQG   +I +S ND + A  E ++GSE+ FA LM++ A++IGM+N+ + +A+GL  +   
Sbjct: 80  EQG---MIVQSGNDAAIALAEHVAGSEEAFASLMNSYAQRIGMKNSHFVDATGLSAEGHY 136

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
           ++A D A+LG  L ++ P+ Y Y  +++        +N N LL +  ++DGIKTG+T  +
Sbjct: 137 SSAYDMALLGRALIRDSPETYAYNKVKELVVNGIKQSNRNLLLWRDPSVDGIKTGHTSEA 196

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTL 293
           G+ I+ S +  D  I+ VVMG  + ++R + +L L+     F E  TL
Sbjct: 197 GYCIINSAKRGDQRILTVVMGDVSEKKRAEDSLALLNWGFRFFETHTL 244


>gi|26248385|ref|NP_754425.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli CFT073]
 gi|237704469|ref|ZP_04534950.1| penicillin-binding protein 6B [Escherichia sp. 3_2_53FAA]
 gi|26108789|gb|AAN80992.1|AE016762_245 Penicillin-binding protein 6B precursor [Escherichia coli CFT073]
 gi|226900835|gb|EEH87094.1| penicillin-binding protein 6B [Escherichia sp. 3_2_53FAA]
          Length = 390

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 35  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 91

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 92  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 151

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 152 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 211

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 212 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 271

Query: 279 KALELI 284
           +A +L+
Sbjct: 272 EARKLL 277


>gi|327253142|gb|EGE64796.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli STEC_7v]
          Length = 388

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 209

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 210 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 269

Query: 279 KALELI 284
           +A +L+
Sbjct: 270 EARKLL 275


>gi|156977862|ref|YP_001448768.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi ATCC BAA-1116]
 gi|156529456|gb|ABU74541.1| hypothetical protein VIBHAR_06653 [Vibrio harveyi ATCC BAA-1116]
          Length = 388

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 117/204 (57%), Gaps = 4/204 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y++ + ++S +L  + ++ VS+ A +    + SK++++ K   T    + 
Sbjct: 60  PASLTKLMTAYVVGQEIKSGRLQWDDKVTVSENAWSAKFPDSSKMFIQPKDEITVANLMR 119

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E ++G E  F  LM+  A K+ + +T + N+ GL  +   T+  D
Sbjct: 120 GVIIQSGNDACVALAEHVAGGEGAFVALMNGWADKLSLNDTYFVNSHGLDSEGIQTSPND 179

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A L   +  + P+ Y  +S + F++      N NKLL +K  ++DG KTGYT N+G+++
Sbjct: 180 MATLMQSIINDVPEVYALYSEKVFKWNKITQYNRNKLLWDKSMDVDGGKTGYTSNAGYSL 239

Query: 253 VTSLRYKDDPIVAVVMGMPTSQER 276
           V+S +     +++VVMG P+ Q R
Sbjct: 240 VSSAKQGKMRLISVVMGTPSKQSR 263


>gi|15802489|ref|NP_288515.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7
           EDL933]
 gi|12516188|gb|AAG57069.1|AE005426_11 penicillin binding protein 6b [Escherichia coli O157:H7 str.
           EDL933]
          Length = 390

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 35  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 91

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 92  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 151

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 152 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 211

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 212 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 271

Query: 279 KALELI 284
           +A +L+
Sbjct: 272 EARKLL 277


>gi|289663962|ref|ZP_06485543.1| D-alanyl-D-alanine carboxypeptidase precursor [Xanthomonas
           campestris pv. vasculorum NCPPB702]
          Length = 371

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 129/225 (57%), Gaps = 8/225 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL--- 133
           PAS+TK+MT Y++   +++ K+  + Q+ +S+ A  +  +        +   +   L   
Sbjct: 44  PASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWREGGAGTDGSYSGFPVNQTARLEDM 103

Query: 134 --ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
              +  +S ND + A  E ++GSE+ FA LM++ A KIGM+++ + NA GL  +   +TA
Sbjct: 104 EKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKIGMKDSYFVNAHGLSAEGHHSTA 163

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            D A+LG  + +++P+ Y Y  I++F+  +   +N N+LL +   +DGIKTG+T  +G+ 
Sbjct: 164 YDLAMLGRAMVRDYPETYAYNKIKEFQVGSIKQSNRNRLLWRDPAVDGIKTGHTSEAGYC 223

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTL 293
           +++S +  D  ++AVVMG  + ++R   +L L+     F E  +L
Sbjct: 224 LLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNWGFRFFETHSL 268


>gi|170683658|ref|YP_001743130.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli SMS-3-5]
 gi|331647659|ref|ZP_08348751.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli M605]
 gi|331663510|ref|ZP_08364420.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli TA143]
 gi|170521376|gb|ACB19554.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli SMS-3-5]
 gi|281179111|dbj|BAI55441.1| penicillin binding protein 6 [Escherichia coli SE15]
 gi|323161927|gb|EFZ47801.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli E128010]
 gi|323187689|gb|EFZ72990.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli RN587/1]
 gi|331043383|gb|EGI15521.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli M605]
 gi|331059309|gb|EGI31286.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli TA143]
          Length = 390

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 35  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 91

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 92  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 151

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 152 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 211

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 212 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 271

Query: 279 KALELI 284
           +A +L+
Sbjct: 272 EARKLL 277


>gi|170719804|ref|YP_001747492.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida W619]
 gi|169757807|gb|ACA71123.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida W619]
          Length = 386

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 147/286 (51%), Gaps = 13/286 (4%)

Query: 27  NIQLMGKILFLSIIMI----SMASE--LHAKPKYSS---IVIDVNK-NQMTGFKQDEPRY 76
           NI  + K L L ++++    + A+E  + A P+ ++   +++D +  N +     DE   
Sbjct: 2   NITNLAKRLCLPVLLMITPAAFAAEQMMPAPPQLAAKSYVLMDASSGNVLVENNGDERLP 61

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT YI    ++  ++  N  + VS+ A     S++++K  +  T    +  +I
Sbjct: 62  PASLTKLMTAYIATLDIRRGQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGII 121

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E I+GSE  FA +M+  A  +GM N+ + N +GL   +  ++A D A 
Sbjct: 122 IQSGNDASVALAEHIAGSEDAFADMMNKTAADLGMSNSHFMNPTGLPHPDHYSSAHDMAT 181

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   +    P +Y  +S ++F + N    N N LL +   +DG+KTG+T  +G+ +V S 
Sbjct: 182 LARAIINVDPAHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTEEAGYCMVASA 241

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTH 299
                 ++AVV G  + Q R  +  +L+T    F E +T   + T 
Sbjct: 242 VRDGQRLIAVVFGTNSEQSRAAETQKLLTYGFRFFETQTFYQKGTE 287


>gi|332278836|ref|ZP_08391249.1| penicillin-binding protein 6B [Shigella sp. D9]
 gi|332101188|gb|EGJ04534.1| penicillin-binding protein 6B [Shigella sp. D9]
          Length = 390

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 35  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 91

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 92  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 151

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 152 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 211

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 212 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 271

Query: 279 KALELI 284
           +A +L+
Sbjct: 272 EARKLL 277


>gi|218699400|ref|YP_002407029.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli IAI39]
 gi|218369386|emb|CAR17143.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli IAI39]
          Length = 388

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 209

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 210 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 269

Query: 279 KALELI 284
           +A +L+
Sbjct: 270 EARKLL 275


>gi|330006051|ref|ZP_08305469.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3]
 gi|328535989|gb|EGF62402.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3]
          Length = 423

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 135/253 (53%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI  A ++ A+   S I+ID N  ++      D  R PASLTKMMT Y+I + +++ K  
Sbjct: 57  MIPGAPQIDAE---SWILIDYNSGKVLAENNADSRRDPASLTKMMTSYVIGQAMKAGKFK 113

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            +  + V   A AT NP     S ++LK        Q I  +  +S ND   A  ++++G
Sbjct: 114 ESDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYVAG 173

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+N    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 174 SQDAFVSLMNNYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYR 233

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 234 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 293

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 294 FKGRESESKKLLT 306


>gi|15832066|ref|NP_310839.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           Sakai]
 gi|168764096|ref|ZP_02789103.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4501]
 gi|168777102|ref|ZP_02802109.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4196]
 gi|168784009|ref|ZP_02809016.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4076]
 gi|188025184|ref|ZP_02997384.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4113]
 gi|189402596|ref|ZP_03006773.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4401]
 gi|189403423|ref|ZP_03007084.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4486]
 gi|189406210|ref|ZP_03008107.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC508]
 gi|208810754|ref|ZP_03252630.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4206]
 gi|208816718|ref|ZP_03257838.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4045]
 gi|208818499|ref|ZP_03258819.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4042]
 gi|209397891|ref|YP_002271183.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4115]
 gi|209447203|ref|YP_002274288.1| penicillin-binding protein 6b [Stx2-converting phage 1717]
 gi|217329693|ref|ZP_03445772.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. TW14588]
 gi|261256444|ref|ZP_05948977.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283247|ref|YP_003500065.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O55:H7
           str. CB9615]
 gi|293410371|ref|ZP_06653947.1| dacD [Escherichia coli B354]
 gi|13362280|dbj|BAB36235.1| penicillin binding protein 6b [Escherichia coli O157:H7 str. Sakai]
 gi|187767572|gb|EDU31416.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4196]
 gi|188014404|gb|EDU52526.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4113]
 gi|188998746|gb|EDU67732.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4076]
 gi|189354737|gb|EDU73156.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4401]
 gi|189360801|gb|EDU79220.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4486]
 gi|189365830|gb|EDU84246.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4501]
 gi|189375987|gb|EDU94403.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC508]
 gi|208725270|gb|EDZ74977.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4206]
 gi|208731061|gb|EDZ79750.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4045]
 gi|208738622|gb|EDZ86304.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4042]
 gi|209159291|gb|ACI36724.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4115]
 gi|209361182|gb|ACI43175.1| penicillin-binding protein 6b [Escherichia coli O157:H7]
 gi|209748254|gb|ACI72434.1| penicillin binding protein 6b [Escherichia coli]
 gi|209748256|gb|ACI72435.1| penicillin binding protein 6b [Escherichia coli]
 gi|209748258|gb|ACI72436.1| penicillin binding protein 6b [Escherichia coli]
 gi|217317461|gb|EEC25890.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. TW14588]
 gi|284922011|emb|CBG35089.1| penicillin-binding protein 6B [Escherichia coli 042]
 gi|290763120|gb|ADD57081.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O55:H7
           str. CB9615]
 gi|291470839|gb|EFF13323.1| dacD [Escherichia coli B354]
          Length = 390

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 35  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 91

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 92  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 151

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 152 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 211

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 212 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 271

Query: 279 KALELI 284
           +A +L+
Sbjct: 272 EARKLL 277


>gi|294338753|emb|CAZ87085.1| putative Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
           [Thiomonas sp. 3As]
          Length = 393

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 122/213 (57%), Gaps = 5/213 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT Y+ F+ L+   + LN  +  SK A     S++++  +   +    +L +I
Sbjct: 68  PASLTKLMTAYLTFKALKEGTIKLNQMVTESKEAWQTGGSRMFIDPRVPVSVNDLLLGMI 127

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND +    + + GS   F  +M+ +A++ G++ T + + +GL D    TTA D +I
Sbjct: 128 VQSGNDAAMTLAQTVGGSVSAFVAMMNRQAQQWGLKGTHFMDPTGLPDPGHHTTAYDLSI 187

Query: 197 LGILLRKNFP-QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           +   + ++FP  Y +YF +++F Y +    N   LL    ++DG+KTGYT  +G+ ++TS
Sbjct: 188 IATHIIRDFPADYARYFKVKEFTYNHITQPNRVSLLFTDPSVDGMKTGYTSEAGYCMITS 247

Query: 256 -LR-YKDDP--IVAVVMGMPTSQERDQKALELI 284
            LR + + P  ++ VVMG PT + R +++  L+
Sbjct: 248 ALRQFPNGPRRLLTVVMGTPTERARGEESQVLL 280


>gi|269966371|ref|ZP_06180456.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B]
 gi|269828958|gb|EEZ83207.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B]
          Length = 390

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/213 (33%), Positives = 117/213 (54%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + + +  + LN ++ +S+ A  +N    SK++++  T  +      
Sbjct: 63  PASLTKLMTAYVAGQEINTGNITLNDEVVISRNAWAKNFPDSSKMFIEVNTSVSLSDLYR 122

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GSE  F  LM++ A K+ + NT + N  GL      +T  D
Sbjct: 123 GLIVQSGNDASVAIAEHVAGSESGFVSLMNSWAAKLELSNTAFTNPHGLDSDGLYSTPYD 182

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A LG  + ++ P  Y  +S   F Y      N N LL ++  N+DG+KTGYT  +G+++
Sbjct: 183 IAKLGQAIIRDLPDIYPLYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYSL 242

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            TS    D  ++AVVMG  +   R+ ++ +L++
Sbjct: 243 ATSATQGDMRLIAVVMGAKSENVRESESKQLLS 275


>gi|168790220|ref|ZP_02815227.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC869]
 gi|195939526|ref|ZP_03084908.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           EC4024]
 gi|254793720|ref|YP_003078557.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           TW14359]
 gi|261226456|ref|ZP_05940737.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|189370276|gb|EDU88692.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC869]
 gi|226237417|dbj|BAH46939.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli O55:H7]
 gi|254593120|gb|ACT72481.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli O157:H7 str. TW14359]
 gi|320188186|gb|EFW62850.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320641418|gb|EFX10862.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           G5101]
 gi|320646787|gb|EFX15664.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H- str.
           493-89]
 gi|320652066|gb|EFX20409.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H- str.
           H 2687]
 gi|320657428|gb|EFX25226.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320663244|gb|EFX30549.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 388

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 209

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 210 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 269

Query: 279 KALELI 284
           +A +L+
Sbjct: 270 EARKLL 275


>gi|293415304|ref|ZP_06657947.1| dacD [Escherichia coli B185]
 gi|291432952|gb|EFF05931.1| dacD [Escherichia coli B185]
 gi|323168855|gb|EFZ54535.1| D-alanyl-D-alanine carboxypeptidase dacD [Shigella sonnei 53G]
          Length = 390

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 35  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 91

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 92  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 151

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 152 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 211

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 212 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 271

Query: 279 KALELI 284
           +A +L+
Sbjct: 272 EARKLL 277


>gi|262041277|ref|ZP_06014488.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259041393|gb|EEW42453.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 423

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 135/253 (53%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI  A ++ A+   S I+ID N  ++      D  R PASLTKMMT Y+I + +++ K  
Sbjct: 57  MIPGAPQIDAE---SWILIDYNSGKVLAENNADSRRDPASLTKMMTSYVIGQAMKAGKFK 113

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            +  + V   A AT NP     S ++LK        Q I  +  +S ND   A  ++++G
Sbjct: 114 ESDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYVAG 173

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+N    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 174 SQDAFVSLMNNYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYR 233

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 234 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 293

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 294 FKGRESESKKLLT 306


>gi|194428756|ref|ZP_03061292.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B171]
 gi|194436027|ref|ZP_03068129.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1]
 gi|215487233|ref|YP_002329664.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218554572|ref|YP_002387485.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli IAI1]
 gi|218705552|ref|YP_002413071.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli UMN026]
 gi|293405492|ref|ZP_06649484.1| dacD [Escherichia coli FVEC1412]
 gi|298381180|ref|ZP_06990779.1| dacD [Escherichia coli FVEC1302]
 gi|307312424|ref|ZP_07592058.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli W]
 gi|312967243|ref|ZP_07781459.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 2362-75]
 gi|331668710|ref|ZP_08369558.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli TA271]
 gi|194413203|gb|EDX29489.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B171]
 gi|194424755|gb|EDX40740.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1]
 gi|215265305|emb|CAS09700.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218361340|emb|CAQ98928.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli IAI1]
 gi|218432649|emb|CAR13544.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli UMN026]
 gi|222033782|emb|CAP76523.1| Penicillin-binding protein 6B [Escherichia coli LF82]
 gi|291427700|gb|EFF00727.1| dacD [Escherichia coli FVEC1412]
 gi|298278622|gb|EFI20136.1| dacD [Escherichia coli FVEC1302]
 gi|306907595|gb|EFN38098.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli W]
 gi|312288051|gb|EFR15955.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 2362-75]
 gi|312946640|gb|ADR27467.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315061285|gb|ADT75612.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli W]
 gi|320193299|gb|EFW67937.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli WV_060327]
 gi|323378135|gb|ADX50403.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli KO11]
 gi|330911850|gb|EGH40360.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli AA86]
 gi|331063904|gb|EGI35815.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli TA271]
          Length = 388

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 209

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 210 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 269

Query: 279 KALELI 284
           +A +L+
Sbjct: 270 EARKLL 275


>gi|330828593|ref|YP_004391545.1| Penicillin-binding protein [Aeromonas veronii B565]
 gi|328803729|gb|AEB48928.1| Penicillin-binding protein [Aeromonas veronii B565]
          Length = 398

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 138/254 (54%), Gaps = 13/254 (5%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKL 98
           +++  A E+ AK   + I+ID    Q+   +  E R P ASLTKMMT YII + L    +
Sbjct: 34  MVVPAAPEISAK---AHILIDYYSGQVLAEQNAEERLPPASLTKMMTSYIIGQELLKGNI 90

Query: 99  HLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                + +S+ A ++N    SK++++     + +     +I +S ND   A  EF++GS 
Sbjct: 91  KRTDMVTISQNAWSKNYSDSSKMFIEVGKQVSVDDLNKGIIIQSGNDACVAMAEFLAGST 150

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             FA LM++ A K+GM ++ + N  GL  +   +TA D A LG  L ++ P+ YK +S +
Sbjct: 151 DSFASLMNSWAAKLGMNDSHFMNPHGLDAEGHYSTAHDMARLGQALIRDLPEEYKIYSQK 210

Query: 216 KFRYRNRIITNHNK---LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMP 271
            F +    IT HN+   L ++   +DGIKTG+    G+N+V+S    +   ++AVV+G  
Sbjct: 211 SFVFNG--ITQHNRNRLLWDQSLQVDGIKTGHVSQVGYNLVSSATNNEGMRLIAVVLGAS 268

Query: 272 TSQERDQKALELIT 285
           +   R  ++ +L+T
Sbjct: 269 SEASRAAESKKLLT 282


>gi|293397311|ref|ZP_06641583.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM
           4582]
 gi|291420229|gb|EFE93486.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM
           4582]
          Length = 431

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 137/253 (54%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++      D  R PASLTKMMT Y+I + L+S K+ 
Sbjct: 65  MIPGVPQIDAE---SYILIDYNSGKVLAESNADARRDPASLTKMMTSYVIGQALKSGKIG 121

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V + A AT NP     S ++LK        +    +  +S ND   A  ++++G
Sbjct: 122 QEDLVTVGQDAWATGNPVFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAG 181

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+   K++G+QNT ++   GL  + Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 182 SQDAFVNLMNTYVKQLGLQNTHFQTVHGLDAQGQFSSARDMALIGQALIRDVPDEYAIYK 241

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F + N    N N LL +   N+DGIKTG+T  +G+N+V S       +++ V+G  T
Sbjct: 242 EKEFTFNNIRQVNRNGLLWDTSLNVDGIKTGHTSAAGYNLVASATEGQMRLISAVLGGRT 301

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 302 YKGRETESKKLLT 314


>gi|309702334|emb|CBJ01656.1| penicillin-binding protein 6B [Escherichia coli ETEC H10407]
          Length = 388

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 209

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 210 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 269

Query: 279 KALELI 284
           +A +L+
Sbjct: 270 EARKLL 275


>gi|238794862|ref|ZP_04638462.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia intermedia ATCC
           29909]
 gi|238725805|gb|EEQ17359.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia intermedia ATCC
           29909]
          Length = 401

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 124/221 (56%), Gaps = 7/221 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           D+   PASLTK+M+ Y+I + +++ K+H +  + V K A AT NP     S ++LK    
Sbjct: 60  DQRLDPASLTKIMSSYVIGQAIKAGKVHPDDLVTVGKDAWATGNPALRGSSLMFLKPGDQ 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
                    ++ +S ND S A  ++++GS+  F  LM+N AK +G+ NT +    GL   
Sbjct: 120 VKLSDLNKGIVIQSGNDASIALADYVAGSQDSFVGLMNNYAKALGLSNTHFMTVHGLDAP 179

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGY 244
            Q +TARD A+LG  L ++ P+ Y     ++F +      N N+LL N   N+DG+KTG+
Sbjct: 180 GQYSTARDMAVLGQALIRDVPEEYALHKEKEFTFNKIRQINRNRLLWNTNLNVDGMKTGF 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           T  +G N+V S       +++VV+G P+ + R  ++ +L++
Sbjct: 240 TSGAGHNLVASATEGPMRLISVVLGAPSDRVRFSESEKLLS 280


>gi|288555970|ref|YP_003427905.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudofirmus OF4]
 gi|288547130|gb|ADC51013.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudofirmus OF4]
          Length = 386

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 146/258 (56%), Gaps = 9/258 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K    + P AS+TK+MT+ +I E +    L  + +I  S+
Sbjct: 32  AENASSAIVIERDTGEVLFEKNSHDQLPPASMTKIMTMLLIMEAIDEGSLSYDDKIRTSE 91

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T    + A+   S ND S A  E + G+E++F  +M++KAK+
Sbjct: 92  NAASMGGSQVFLEPGEEMTVTDMLKAIAVASGNDASVAMAEHLGGTEEEFVSMMNDKAKE 151

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRK-----NFPQYYKYFSIRKFRYRNRI 223
           +G++NT + N++GL  +N  TTA D A++   L K      F   Y+ + +R+       
Sbjct: 152 LGLENTNFMNSNGLPAENHYTTAYDLAMISKELLKYEDITKFTGIYEDY-LRQDSENKFW 210

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           + N NKL+     +DG+KTG+TR + + +  + +  D  +++V+MG PT +ER+ +  E+
Sbjct: 211 LVNTNKLVKFYPGVDGLKTGFTREAMYCLTATAQKNDMRVISVIMGAPTPKERNAQITEM 270

Query: 284 IT-SFLEKKTLK-HQQTH 299
           +  SF + KT K +++ H
Sbjct: 271 LDYSFSQFKTHKLYERDH 288


>gi|82776165|ref|YP_402512.1| D-alanyl-D-alanine carboxypeptidase fraction C [Shigella
           dysenteriae Sd197]
 gi|81240313|gb|ABB61023.1| D-alanyl-D-alanine carboxypeptidase [Shigella dysenteriae Sd197]
          Length = 400

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 83/236 (35%), Positives = 125/236 (52%), Gaps = 20/236 (8%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A  T NP     S ++LK    
Sbjct: 59  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWVTGNPALRGSSVMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 119 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 178

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 179 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 233

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKKT 292
           +KTG T  +G+N+V S    D  +++VV+G  T + R    +K L     F E  T
Sbjct: 234 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLAWGFRFFETVT 289


>gi|309786587|ref|ZP_07681209.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae
           1617]
 gi|308925554|gb|EFP71039.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae
           1617]
          Length = 364

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 83/236 (35%), Positives = 125/236 (52%), Gaps = 20/236 (8%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A  T NP     S ++LK    
Sbjct: 23  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWVTGNPALRGSSVMFLKPGDQ 82

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 83  VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 142

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 143 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLNVDG 197

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKKT 292
           +KTG T  +G+N+V S    D  +++VV+G  T + R    +K L     F E  T
Sbjct: 198 MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLAWGFRFFETVT 253


>gi|157155424|ref|YP_001463361.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E24377A]
 gi|157077454|gb|ABV17162.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E24377A]
 gi|323961778|gb|EGB57379.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H489]
          Length = 388

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 209

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 210 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 269

Query: 279 KALELI 284
           +A +L+
Sbjct: 270 EARKLL 275


>gi|323936908|gb|EGB33191.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1520]
          Length = 388

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKNLTW 209

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 210 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 269

Query: 279 KALELI 284
           +A +L+
Sbjct: 270 EARKLL 275


>gi|160892702|ref|ZP_02073492.1| hypothetical protein CLOL250_00232 [Clostridium sp. L2-50]
 gi|156865743|gb|EDO59174.1| hypothetical protein CLOL250_00232 [Clostridium sp. L2-50]
          Length = 464

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 118/220 (53%), Gaps = 8/220 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE R PAS+TK+MTL ++FE +++    ++  + VS+ AA+   S+ + +     T E  
Sbjct: 130 DEARKPASVTKVMTLLLVFEAMKAGDYQMSDIVTVSEHAASMGGSQCFFETGEQQTVEDM 189

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           I  +I  S ND + A  EF +GSE+ F   M+++AK++GM++T + NA GL      T+A
Sbjct: 190 IKCIIIASGNDAAVAMAEFTAGSEEAFVQRMNDRAKELGMEHTHFVNACGLDADGHETSA 249

Query: 192 RDQAILGILLRKNFPQYYKYFSI-------RKFRYRNRI-ITNHNKLLNKMHNIDGIKTG 243
           RD AI+   L    P+  KY  I       +  R  +R  + N NK LN      G+KTG
Sbjct: 250 RDIAIMSRQLIDEHPEILKYSGIWMDSIIHKTARGESRFDLANTNKFLNIYTGATGLKTG 309

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           YT  + + +  +       ++AV+MG  T   R+++  +L
Sbjct: 310 YTATAKYCMSATANRNGITLIAVIMGAETKDIRNKEVCKL 349


>gi|256017815|ref|ZP_05431680.1| D-alanyl-D-alanine carboxypeptidase [Shigella sp. D9]
          Length = 388

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 209

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 210 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 269

Query: 279 KALELI 284
           +A +L+
Sbjct: 270 EARKLL 275


>gi|110642224|ref|YP_669954.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli 536]
 gi|191170002|ref|ZP_03031556.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11]
 gi|227887061|ref|ZP_04004866.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli 83972]
 gi|110343816|gb|ABG70053.1| penicillin-binding protein 6B precursor [Escherichia coli 536]
 gi|190909518|gb|EDV69103.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11]
 gi|227835411|gb|EEJ45877.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli 83972]
 gi|307554080|gb|ADN46855.1| DD-carboxypeptidase [Escherichia coli ABU 83972]
 gi|323956179|gb|EGB51930.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H263]
          Length = 388

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 209

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 210 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 269

Query: 279 KALELI 284
           +A +L+
Sbjct: 270 EARKLL 275


>gi|89108830|ref|AP_002610.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K-12
           substr. W3110]
 gi|162135904|ref|NP_416514.4| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli str. K-12 substr. MG1655]
 gi|170081640|ref|YP_001730960.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238901200|ref|YP_002926996.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli BW2952]
 gi|3183515|sp|P33013|DACD_ECOLI RecName: Full=D-alanyl-D-alanine carboxypeptidase dacD;
           Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
           Full=Penicillin-binding protein 6b; Short=PBP-6b; Flags:
           Precursor
 gi|85675189|dbj|BAA15838.2| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K12
           substr. W3110]
 gi|87082022|gb|AAC75071.2| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli str. K-12 substr. MG1655]
 gi|169889475|gb|ACB03182.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238860731|gb|ACR62729.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli BW2952]
 gi|260448889|gb|ACX39311.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli DH1]
 gi|315136643|dbj|BAJ43802.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli DH1]
 gi|332343793|gb|AEE57127.1| D-alanyl-D-alanine carboxypeptidase DacD [Escherichia coli UMNK88]
          Length = 388

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 209

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 210 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 269

Query: 279 KALELI 284
           +A +L+
Sbjct: 270 EARKLL 275


>gi|331673546|ref|ZP_08374309.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli TA280]
 gi|331068819|gb|EGI40211.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli TA280]
          Length = 390

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 135/247 (54%), Gaps = 11/247 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 35  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 91

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 92  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 151

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 152 EMMNNYAGKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 211

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 212 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 271

Query: 279 KALELIT 285
           +A +L++
Sbjct: 272 EARKLLS 278


>gi|21241435|ref|NP_641017.1| penicillin-binding protein 6 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21106773|gb|AAM35553.1| penicillin-binding protein 6 [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 401

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 128/225 (56%), Gaps = 8/225 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL--- 133
           PAS+TK+MT Y++   +++ K+  + Q+ +S+ A  +  +        +   +   L   
Sbjct: 74  PASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWREGGAGTDGSYSGFPVNQTARLEDM 133

Query: 134 --ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
              +  +S ND + A  E ++GSE+ FA LM++ A KIGM+++ + NA GL  +   +TA
Sbjct: 134 EKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKIGMKDSYFVNAHGLSAEGHHSTA 193

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            D A+LG  + +++P+ Y Y  I++F+      +N N+LL +   +DGIKTG+T  +G+ 
Sbjct: 194 YDLALLGRAMVRDYPETYAYNKIKEFQVGTIKQSNRNRLLWRDPAVDGIKTGHTSEAGYC 253

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTL 293
           +++S +  D  ++AVVMG  + ++R   +L L+     F E  +L
Sbjct: 254 LLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNWGFRFFETHSL 298


>gi|78046281|ref|YP_362456.1| D-alanyl-D-alanine carboxypeptidase precursor [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|289667540|ref|ZP_06488615.1| D-alanyl-D-alanine carboxypeptidase precursor [Xanthomonas
           campestris pv. musacearum NCPPB4381]
 gi|78034711|emb|CAJ22356.1| D-alanyl-D-alanine carboxypeptidase precursor [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 401

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 128/225 (56%), Gaps = 8/225 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL--- 133
           PAS+TK+MT Y++   +++ K+  + Q+ +S+ A  +  +        +   +   L   
Sbjct: 74  PASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWREGGAGTDGSYSGFPVNQTARLEDM 133

Query: 134 --ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
              +  +S ND + A  E ++GSE+ FA LM++ A KIGM+++ + NA GL  +   +TA
Sbjct: 134 EKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKIGMKDSYFVNAHGLSAEGHHSTA 193

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            D A+LG  + +++P+ Y Y  I++F+      +N N+LL +   +DGIKTG+T  +G+ 
Sbjct: 194 YDLALLGRAMVRDYPETYAYNKIKEFQVGTIKQSNRNRLLWRDPAVDGIKTGHTSEAGYC 253

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTL 293
           +++S +  D  ++AVVMG  + ++R   +L L+     F E  +L
Sbjct: 254 LLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNWGFRFFETHSL 298


>gi|206577494|ref|YP_002239713.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae
           342]
 gi|288936555|ref|YP_003440614.1| beta-lactamase [Klebsiella variicola At-22]
 gi|290510389|ref|ZP_06549759.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55]
 gi|206566552|gb|ACI08328.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae
           342]
 gi|288891264|gb|ADC59582.1| Beta-lactamase [Klebsiella variicola At-22]
 gi|289777105|gb|EFD85103.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55]
          Length = 399

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 135/253 (53%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI  A ++ A+   S ++ID N  ++      D  R PASLTKMMT Y+I + +++ K  
Sbjct: 33  MIPGAPQIDAE---SWVLIDYNSGKVLAENNADSRRDPASLTKMMTSYVIGQAMKAGKFK 89

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            +  + V   A AT NP     S ++LK        Q I  +  +S ND   A  ++++G
Sbjct: 90  ESDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYVAG 149

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+N    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 150 SQDAFVSLMNNYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYR 209

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 210 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 269

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 270 FKGRESESKKLLT 282


>gi|238790457|ref|ZP_04634227.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia frederiksenii
           ATCC 33641]
 gi|238721483|gb|EEQ13153.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia frederiksenii
           ATCC 33641]
          Length = 383

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 137/253 (54%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   + ++ID N  + +     D  R PASLTKMMT Y+I + +++ K+ 
Sbjct: 17  MIPGVPQIDAE---AYVLIDYNSGKVLAEMNADVRRNPASLTKMMTSYVIGQAIKAGKIG 73

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V K A AT NP     S ++LK        +    +  +S ND   A  ++++G
Sbjct: 74  PEDMVTVGKDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAG 133

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+N    +G++NT +K   GL  + Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 134 SQDSFVNLMNNYVNALGLKNTHFKTVHGLDAEGQFSSARDMALIGQALIRDVPDEYAIYK 193

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F + N   TN N LL +   N+DGIKTG+T  +G+N+V S       +++ V+G  T
Sbjct: 194 EKEFTFNNIRQTNRNGLLWDTSLNVDGIKTGHTDAAGYNLVASATDGQMRLISAVLGGHT 253

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 254 FKGRETESKKLLT 266


>gi|307138677|ref|ZP_07498033.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H736]
 gi|331642633|ref|ZP_08343768.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli H736]
 gi|331039431|gb|EGI11651.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli H736]
          Length = 388

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 209

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 210 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 269

Query: 279 KALELI 284
           +A +L+
Sbjct: 270 EAKKLL 275


>gi|332162265|ref|YP_004298842.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606331|emb|CBY27829.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325666495|gb|ADZ43139.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 396

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 141/264 (53%), Gaps = 15/264 (5%)

Query: 35  LFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIF 90
           L L  +  + A++  A P   +   +++D N  ++      + R  PASLTK+M+ Y+I 
Sbjct: 18  LLLLALPYAHAADSPAAPAIDAKAYVLMDYNSGKVLAEGNSDQRLDPASLTKIMSSYVIG 77

Query: 91  EYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVS 144
           + +++ K+H +  + V K A AT NP     S ++LK             ++ +S ND S
Sbjct: 78  QAIKAGKVHPDDLVTVGKDAWATGNPALRGSSLMFLKPGDQVKLSDLNKGIVIQSGNDAS 137

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  ++I+GS+  F  LM+N AK +G+ NT +    GL    Q +TA D A+LG  L ++
Sbjct: 138 IALADYIAGSQDSFVGLMNNYAKALGLNNTNFMTVHGLDAPGQYSTAHDMAVLGQALIRD 197

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDP- 262
            P  Y     ++F +      N N+LL   + N+DG+KTG+T  +G N+V S    D P 
Sbjct: 198 VPDEYALHKEKEFTFNKIRQINRNRLLWSTNLNVDGMKTGFTAGAGHNLVAS--ATDGPM 255

Query: 263 -IVAVVMGMPTSQERDQKALELIT 285
            +++VV+G P+ + R  ++ +L+T
Sbjct: 256 RLISVVLGAPSDRVRFSESEKLLT 279


>gi|320668144|gb|EFX35013.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 388

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQM-TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q+ T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  EIHAG---SWVLMDYTTGQIFTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 209

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 210 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 269

Query: 279 KALELI 284
           +A +L+
Sbjct: 270 EARKLL 275


>gi|253773059|ref|YP_003035890.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161999|ref|YP_003045107.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli B str.
           REL606]
 gi|297519533|ref|ZP_06937919.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli OP50]
 gi|242377656|emb|CAQ32416.1| DD-carboxypeptidase, penicillin-binding protein 6b [Escherichia
           coli BL21(DE3)]
 gi|253324103|gb|ACT28705.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973900|gb|ACT39571.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli B str. REL606]
 gi|253978094|gb|ACT43764.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli BL21(DE3)]
          Length = 388

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 209

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 210 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 269

Query: 279 KALELI 284
           +A +L+
Sbjct: 270 EAKKLL 275


>gi|54302470|ref|YP_132463.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
           profundum SS9]
 gi|46915892|emb|CAG22663.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
           profundum SS9]
          Length = 394

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 124/224 (55%), Gaps = 4/224 (1%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKE 122
           +  F ++EP  PASLTK+MT Y++ + + +  ++ +  + +S+ A  +     SK++L  
Sbjct: 52  IASFNENEPLAPASLTKIMTSYVVGKEINAGHINNDDLVIISENAWGKKFPGSSKMFLNI 111

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
               T +Q    +I  S ND + A  E ++G +  F  +M+ +A+ IGMQNT + N  GL
Sbjct: 112 GDNVTVDQLNKGVIISSGNDATVALAEHVAGHQAAFIEMMNRQAEVIGMQNTYFTNPHGL 171

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIK 241
               Q TTA D AIL   L K+ P+ Y  F  + F + +    N N LL +   N+DG+K
Sbjct: 172 DADEQFTTAYDIAILTRALIKDLPEMYGLFKEKSFTFHDIKQGNRNGLLWDTTLNVDGVK 231

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           TG+T  +G+++V+S        +AVVMG  ++  R  ++ +L+T
Sbjct: 232 TGHTSKAGYSLVSSAEQSGQRFIAVVMGTKSTGIRRSESKKLLT 275


>gi|193062785|ref|ZP_03043878.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22]
 gi|331683696|ref|ZP_08384292.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli H299]
 gi|192931428|gb|EDV84029.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22]
 gi|331078648|gb|EGI49850.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli H299]
          Length = 388

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 209

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AV+MG  +++ R++
Sbjct: 210 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQHRLIAVIMGADSAKGREE 269

Query: 279 KALELI 284
           +A +L+
Sbjct: 270 EARKLL 275


>gi|260844620|ref|YP_003222398.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O103:H2 str.
           12009]
 gi|257759767|dbj|BAI31264.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O103:H2 str.
           12009]
          Length = 388

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 209

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AV+MG  +++ R++
Sbjct: 210 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQHRLIAVIMGADSAKGREE 269

Query: 279 KALELI 284
           +A +L+
Sbjct: 270 EARKLL 275


>gi|323498490|ref|ZP_08103483.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sinaloensis DSM 21326]
 gi|323316379|gb|EGA69397.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sinaloensis DSM 21326]
          Length = 385

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 121/213 (56%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + + +  + L+ Q+ +S+ A  +N    SK++++  T         
Sbjct: 58  PASLTKLMTAYVAGQEVANGNIGLDDQVTISERAWAKNFPDSSKMFIEVGTQVALSDLYR 117

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GSE  F  LM++ A K+G++N+ + N  GL      +T RD
Sbjct: 118 GLIVQSGNDASVAIAEHVAGSEGAFVSLMNSWAAKLGLENSAFSNPHGLDSDALYSTPRD 177

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A L   + ++ P  Y  +S R F Y      N N LL ++  ++DG+KTGYT  +G+++
Sbjct: 178 IATLSQAIIRDLPTIYPLYSERAFTYNGITQYNRNGLLRDRSLHVDGMKTGYTSGAGYSL 237

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            TS    +  +++VVMG  +++ R+ ++ +L++
Sbjct: 238 ATSATNGNMRLISVVMGSSSTKSRESESKQLLS 270


>gi|322832952|ref|YP_004212979.1| Beta-lactamase [Rahnella sp. Y9602]
 gi|321168153|gb|ADW73852.1| Beta-lactamase [Rahnella sp. Y9602]
          Length = 389

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 122/231 (52%), Gaps = 7/231 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA------ATQNPSKLYLKEKTY 125
           DE R PASLTK+MT Y+I   L  KK+ ++  + V + A      +    S ++LK   +
Sbjct: 57  DERRNPASLTKLMTGYVIDRALDHKKITMDDVVTVPQEAWVAGNKSLAGSSLMFLKPGDH 116

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            T    I  +I  S ND   A  ++++GS+  F  +M+     +G+ NT ++   GL   
Sbjct: 117 VTVRDLIRGIIITSGNDACVAMADYVAGSQDSFVGMMNQYVVSMGLTNTHFETVHGLDAP 176

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGY 244
            Q TT+ D A L   +    P+ Y  ++ +   Y N    N N LL +K   +DG+KTG+
Sbjct: 177 GQYTTSYDLAKLSRAIIGGEPEEYHMYAEKSLTYDNITQQNRNGLLWDKNLQVDGLKTGH 236

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKH 295
           T ++GFNI+ S    D  ++AVVMG  +S+ R+++A +L+T    + T K 
Sbjct: 237 TESAGFNIIASATQGDRRLIAVVMGGKSSKGREEQARKLLTWGFREYTSKQ 287


>gi|238752594|ref|ZP_04614067.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia rohdei ATCC
           43380]
 gi|238709185|gb|EEQ01430.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia rohdei ATCC
           43380]
          Length = 383

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 136/253 (53%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   + ++ID N  + +     D  R PASLTKMMT Y+I + +++ K+ 
Sbjct: 17  MIPGVPQIDAE---AYVLIDYNSGKVLAEMNADTRRNPASLTKMMTSYVIGQAIKAGKIG 73

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V K A AT NP     S ++LK        +    +  +S ND   A  ++++G
Sbjct: 74  PEDMVTVGKDAWATGNPEFRGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAG 133

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+N    +G++NT +K   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 134 SQDSFVNLMNNYVNALGLKNTHFKTVHGLDADGQFSSARDMALIGQALIRDVPDEYAIYK 193

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F + N   TN N LL +   N+DGIKTG+T  +G+N+V S       +++ V+G  T
Sbjct: 194 EKEFTFNNIRQTNRNGLLWDTSLNVDGIKTGHTDAAGYNLVASATDGQMRLISTVLGGHT 253

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 254 YKGRETESKKLLT 266


>gi|328471030|gb|EGF41941.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus 10329]
          Length = 389

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 118/213 (55%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + + +  + L+ Q+ +S+ A  +N    SK++++  T  +      
Sbjct: 62  PASLTKLMTAYVAGQEVNAGNISLDDQVVISRNAWAKNFPDSSKMFIEVNTSVSLSDLYR 121

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+ +S ND S A  E ++GSE  F  LM++ A ++G+ N+ + N  GL      +T  D
Sbjct: 122 GLVVQSGNDASVAIAEHVAGSEAGFVSLMNSWASQLGLTNSSFTNPHGLDSDGLYSTPHD 181

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A LG  + ++ P  Y  +S   F Y      N N LL ++  N+DG+KTGYT  +G+++
Sbjct: 182 IAKLGQAIIRDLPDIYPMYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYSL 241

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            TS    D  ++AVVMG  +   R+ ++ +L++
Sbjct: 242 ATSATNGDMRLIAVVMGAKSQSVRESESKQLLS 274


>gi|259908963|ref|YP_002649319.1| D-alanyl-D-alanine carboxypeptidase [Erwinia pyrifoliae Ep1/96]
 gi|224964585|emb|CAX56098.1| D-alanyl-D-alanine carboxypeptidase [Erwinia pyrifoliae Ep1/96]
 gi|283478973|emb|CAY74889.1| dacC [Erwinia pyrifoliae DSM 12163]
          Length = 402

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/255 (31%), Positives = 139/255 (54%), Gaps = 11/255 (4%)

Query: 45  ASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHL 100
           A ++ A P+  +   I++D + +++      + R  PASLTKMM+ Y+I + L++ K+  
Sbjct: 30  AQQMPAAPQIDAKAWILMDYSSSKVLAESNADLRLDPASLTKMMSSYVIGQALKAGKIGK 89

Query: 101 NTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
           +  + V K A AT NP     S ++LK   +    +    ++ +S ND S A  ++++GS
Sbjct: 90  DDLVTVGKDAWATGNPVLKGSSLMFLKPGDHIAVSELNKGIVIQSGNDASIALADYVAGS 149

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           +  F  LM+N  + +G++NT +K   GL    Q +TARD A++G  L ++ P  Y     
Sbjct: 150 QDAFVGLMNNYVQALGLKNTHFKTVHGLDASGQYSTARDMALIGQALIRDVPDEYALHKE 209

Query: 215 RKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           + F + N    N N+LL      +DGIKTG+T  +G N+V S    D  +++VV+G  T 
Sbjct: 210 KVFTFNNIRQYNRNRLLWSTSLQVDGIKTGHTSGAGNNLVASAVDGDRRMISVVLGAATD 269

Query: 274 QERDQKALELITSFL 288
             R +++ +L+T  L
Sbjct: 270 AIRFRESEKLLTWGL 284


>gi|227356744|ref|ZP_03841129.1| D-alanyl-D-alanine carboxypeptidase [Proteus mirabilis ATCC 29906]
 gi|227163034|gb|EEI47969.1| D-alanyl-D-alanine carboxypeptidase [Proteus mirabilis ATCC 29906]
          Length = 400

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 130/230 (56%), Gaps = 8/230 (3%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT 112
           S +++D N  ++   ++ E R  PASLTK+M+ Y++ + ++  ++  +  + V + A AT
Sbjct: 41  SYVLMDYNSGKILASEKPEERLDPASLTKIMSSYVVGQAIKEGRMSPDDIVIVGRNAWAT 100

Query: 113 QNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
            NP     S ++LK             ++ +S ND S A  E ++GS++ F  LM+  A 
Sbjct: 101 GNPVLKGSSLMFLKPGDRVKVIDLNRGMVIQSGNDASIALAEHVAGSQETFVDLMNTYAA 160

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
            +G++NT +K   GL  + Q TTA+D A+L   + ++ P  Y     ++F + N    N 
Sbjct: 161 NLGLKNTHFKTVHGLDSEGQYTTAQDMALLTAAMIRDVPSEYDIHKEKEFTFNNIRQPNR 220

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           N+LL NK  N+DG+KTG+T  +G+N+V+S    +  ++AVV+G P+ + R
Sbjct: 221 NRLLWNKNMNVDGVKTGHTNGAGYNLVSSATEGNMRLIAVVLGAPSDKVR 270


>gi|146310988|ref|YP_001176062.1| D-alanyl-D-alanine carboxypeptidase fraction C [Enterobacter sp.
           638]
 gi|145317864|gb|ABP60011.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Enterobacter sp. 638]
          Length = 400

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 17/226 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L+  + + K A AT NP     S ++LK    
Sbjct: 60  DEQLDPASLTKIMTSYVVGQALKAGKIKLDDMVTIGKDAWATGNPALRGSSVMFLKPGDQ 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS+  F  LM+  A+++G+  T +K   GL   
Sbjct: 120 VSVSDLNKGVIIQSGNDACIALADYVAGSQDSFIGLMNGYAQRLGLTKTTFKTVHGLDAP 179

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD A+LG  L  + P+ Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 180 GQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNVNVDG 234

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 235 MKTGTTAGAGYNLVASATQGDMRLISVVLGTKTDRIRFNESEKLLT 280


>gi|310767134|gb|ADP12084.1| D-alanyl-D-alanine carboxypeptidase [Erwinia sp. Ejp617]
          Length = 402

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/255 (31%), Positives = 139/255 (54%), Gaps = 11/255 (4%)

Query: 45  ASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHL 100
           A ++ A P+  +   I++D + +++      + R  PASLTKMM+ Y+I + L++ K+  
Sbjct: 30  AQQMPAAPQIDAKAWILMDYSSSKVLAESNADLRLDPASLTKMMSSYVIGQALKAGKIGK 89

Query: 101 NTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
           +  + V K A AT NP     S ++LK   +    +    ++ +S ND S A  ++++GS
Sbjct: 90  DDLVTVGKDAWATGNPVLKGSSLMFLKPGDHIAVSELNKGIVIQSGNDASIALADYVAGS 149

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           +  F  LM+N  + +G++NT +K   GL    Q +TARD A++G  L ++ P  Y     
Sbjct: 150 QDAFVGLMNNYVQALGLKNTHFKTVHGLDASGQYSTARDMALIGQALIRDVPDEYALHKE 209

Query: 215 RKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           + F + N    N N+LL      +DGIKTG+T  +G N+V S    D  +++VV+G  T 
Sbjct: 210 KVFTFNNIRQYNRNRLLWSTSLQVDGIKTGHTSGAGNNLVASAVDGDRRMISVVLGAATD 269

Query: 274 QERDQKALELITSFL 288
             R +++ +L+T  L
Sbjct: 270 AIRFRESEKLLTWGL 284


>gi|170730550|ref|YP_001775983.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa M12]
 gi|167965343|gb|ACA12353.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa M12]
          Length = 347

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 130/228 (57%), Gaps = 14/228 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA------ATQNPSKLYLKEKT--YFTT 128
           PASLTK+MT Y+I   +++ K+H + Q+ +++ A       T      +   KT      
Sbjct: 20  PASLTKVMTSYVIAAEIKNGKVHRDDQMMMTENAWRKGGAGTDGSYSGFPVNKTARLEDM 79

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           EQG   +I +S ND + A  E ++GSE+ FA LM++ A++IGM+N+ + +A+GL  +   
Sbjct: 80  EQG---MIVQSGNDAAIALAEHVAGSEEAFASLMNSYAQRIGMKNSHFVDATGLSAEGHY 136

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
           ++A D A+LG  L ++ P+ Y Y  +++        +N N LL +  ++DGIKTG+T  +
Sbjct: 137 SSAYDMALLGRALIRDSPETYAYNKVKELVVNGIKQSNRNLLLWRDPSVDGIKTGHTSEA 196

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTL 293
           G+ I+ S +  D  I+ VVMG  + ++R + +L L+     F E  TL
Sbjct: 197 GYCIINSAKRGDQRILTVVMGDVSEKKRAEDSLALLNWGFRFFETHTL 244


>gi|332289415|ref|YP_004420267.1| D-alanyl-D-alanine carboxypeptidase fraction A [Gallibacterium
           anatis UMN179]
 gi|330432311|gb|AEC17370.1| D-alanyl-D-alanine carboxypeptidase fraction A [Gallibacterium
           anatis UMN179]
          Length = 394

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 145/261 (55%), Gaps = 10/261 (3%)

Query: 34  ILFLSIIMISMASELH--AKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLY 87
           +L  S I ++ A  L+  A P+ ++   I++D N    +     D+  YPASLTKMMT Y
Sbjct: 16  LLGFSSISVAFAEGLYDIAPPQINAQTYILMDYNSGAVLAALNPDQKHYPASLTKMMTSY 75

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVS 144
           +I + L+  ++H    + + + +  +N    SK++L      +       +I  S ND  
Sbjct: 76  VIGQALKEGRIHNTDMVTIDEESWGKNFPGSSKMFLNVNQQVSVADLNRGIIIASGNDAC 135

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  ++++GS+  F  +M+    + G++NT ++   GL  +NQ +T+RD A++G  + ++
Sbjct: 136 VAMAKYLAGSQANFINMMNQYVDQFGLKNTHFETVHGLDHENQYSTSRDMALIGARIIRD 195

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
            P+ Y  ++ ++F + N    N N LL +K   +DG+KTG+T  +G+N+V S    +  +
Sbjct: 196 LPEEYHIYAEKEFTFNNIKQPNRNGLLWDKNLTVDGLKTGHTDEAGYNLVASAVNNNMRL 255

Query: 264 VAVVMGMPTSQERDQKALELI 284
           ++VVMG+ + + R+ ++ +L+
Sbjct: 256 ISVVMGVNSFKGREIESKKLL 276


>gi|312115142|ref|YP_004012738.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311220271|gb|ADP71639.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 410

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 133/237 (56%), Gaps = 10/237 (4%)

Query: 56  SIVIDVNKNQMTGFKQDEPRY--PASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-----K 108
           + +IDV ++  T F+++  R   PAS++K+MTL +IF+ L++ ++ ++T+ PVS      
Sbjct: 32  ATLIDV-ESGATLFEKNADRLFAPASMSKIMTLAVIFKKLKAGEITMDTEFPVSLYAWRN 90

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
             A    + +++           I  +  ++AND   A  E ISG+E  FA LM+ +A+ 
Sbjct: 91  GGAPSRTTSMFIPLNQTAKVSDLIQGIAVQNANDACIAVAEGISGTEDAFAKLMTEEARA 150

Query: 169 IGMQNTIYKNASGL-HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           +G+Q + + N++GL H  NQ+T AR+ A L I + K +P  Y YF  ++F+YR     NH
Sbjct: 151 LGLQKSTFGNSTGLPHPGNQMT-ARELAALSIHVIKTYPDLYPYFGQKEFKYRTYTFRNH 209

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N L       DG+K G+T   G++I  S       +V V+ G+ + ++R ++A +++
Sbjct: 210 NPLQATAIAADGLKPGFTEGVGYSIAASAVRDGRRLVLVMNGLESERDRREEAQKIL 266


>gi|197284564|ref|YP_002150436.1| penicillin-binding protein [Proteus mirabilis HI4320]
 gi|194682051|emb|CAR41559.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase)
           [Proteus mirabilis HI4320]
          Length = 400

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 130/230 (56%), Gaps = 8/230 (3%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT 112
           S +++D N  ++   ++ E R  PASLTK+M+ Y++ + ++  ++  +  + V + A AT
Sbjct: 41  SYVLMDYNSGKILASEKPEERLDPASLTKIMSSYVVGQAIKEGRMSPDDIVIVGRNAWAT 100

Query: 113 QNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
            NP     S ++LK             ++ +S ND S A  E ++GS++ F  LM+  A 
Sbjct: 101 GNPVLKGSSLMFLKPGDRVKVIDLNRGMVIQSGNDASIALAEHVAGSQETFVDLMNTYAA 160

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
            +G++NT +K   GL  + Q TTA+D A+L   + ++ P  Y     ++F + N    N 
Sbjct: 161 NLGLKNTHFKTVHGLDSEGQYTTAQDMALLTAAMIRDVPSEYDIHKEKEFTFNNIRQPNR 220

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           N+LL NK  N+DG+KTG+T  +G+N+V+S    +  ++AVV+G P+ + R
Sbjct: 221 NRLLWNKNMNVDGVKTGHTNGAGYNLVSSATEGNMRLIAVVLGAPSDKVR 270


>gi|113969331|ref|YP_733124.1| penicillin-binding protein 6 [Shewanella sp. MR-4]
 gi|117919440|ref|YP_868632.1| penicillin-binding protein 6 [Shewanella sp. ANA-3]
 gi|113884015|gb|ABI38067.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Shewanella sp. MR-4]
 gi|117611772|gb|ABK47226.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Shewanella sp. ANA-3]
          Length = 391

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 125/214 (58%), Gaps = 6/214 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I + +++  +  +  + +SK A ++N    SK++++            
Sbjct: 63  PASLTKMMTSYVIGQEIKAGNVSPDDDVTISKNAWSKNFSDSSKMFIEVGKTVKVSDLNR 122

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E I+G+E  F  +M++ AK++GM+++ ++N+ GL  +N  +TA D
Sbjct: 123 GIIIQSGNDACVAMAEHIAGTEGAFVDMMNSWAKQLGMRDSYFENSHGLDSENHKSTAYD 182

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFN 251
            A+LG  L ++ P+ Y+ +S + + +      N N LL  N M N+DGIKTG+T  +G+N
Sbjct: 183 MALLGAALIRDVPEEYRVYSEKYYTFNGIKQYNRNGLLWDNSM-NVDGIKTGHTSGAGYN 241

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +V S       +++VVMG  +   R  ++ +L+T
Sbjct: 242 LVASATKDGMRLISVVMGTQSEAARKAESKKLLT 275


>gi|327485477|gb|AEA79883.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae LMA3894-4]
          Length = 389

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 133/237 (56%), Gaps = 16/237 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + ++   +H + ++ +S  A  +   + SK++++  TY        
Sbjct: 62  PASLTKLMTSYVAGQEMKRGNIHADDKVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYR 121

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL +    +T  D
Sbjct: 122 GLIVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYD 181

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK---LLNKMHNIDGIKTGYTRNSGF 250
            A+LG  + ++ P+ Y  +S   F Y    IT HN+   L ++  N+DG+KTGYT  +G+
Sbjct: 182 IALLGRAIIRDLPEIYPLYSELSFTYNG--ITQHNRNGLLRDRSMNVDGMKTGYTSGAGY 239

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKDNL 304
           ++ +S    +  +++VVMG  + + R+ ++ +L++    F E  T      H+KD++
Sbjct: 240 SLASSATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVT-----PHQKDSV 291


>gi|261251421|ref|ZP_05943995.1| D-alanyl-D-alanine carboxypeptidase [Vibrio orientalis CIP 102891]
 gi|260938294|gb|EEX94282.1| D-alanyl-D-alanine carboxypeptidase [Vibrio orientalis CIP 102891]
          Length = 388

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 120/213 (56%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + + S  + L+ Q+ +S+ A  +N    SK++++  T         
Sbjct: 61  PASLTKLMTAYVAGQEVNSGNIALDDQVRISRNAWAKNFPDSSKMFIEVGTDVQLMDLYR 120

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GSE  F  LM++ ++K+G+ NT Y N  GL      +T  D
Sbjct: 121 GLIVQSGNDASVAIAEHVAGSEDAFVSLMNSWSQKLGLANTSYTNPHGLDSDGLYSTPYD 180

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A+L   + ++ P  Y  +S   + Y      N N LL ++  N+DG+KTGYT  +G+++
Sbjct: 181 IALLSQAIIRDLPDIYPLYSETAYTYNGITQYNRNGLLRDRSLNVDGMKTGYTSGAGYSL 240

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            TS    D  +++VVMG  +++ R+ ++ +L++
Sbjct: 241 ATSATSGDMRLISVVMGSSSAKSRESESKQLLS 273


>gi|270263700|ref|ZP_06191969.1| hypothetical protein SOD_e03250 [Serratia odorifera 4Rx13]
 gi|270042584|gb|EFA15679.1| hypothetical protein SOD_e03250 [Serratia odorifera 4Rx13]
          Length = 428

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 145/272 (53%), Gaps = 17/272 (6%)

Query: 31  MGKILFLSIIMISMASELHAK------PKYSS---IVIDVNKNQMTG-FKQDEPRYPASL 80
           +G ++ +S   ++ A +++ K      P+  +   ++ID N  ++      D  R PASL
Sbjct: 40  LGSVIAMSAASVAQADDVNIKTMIPGVPQIDAEAYVLIDYNSGKVLAEMNADARRDPASL 99

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILA 134
           TKMMT Y+I + L++ K+     + V + A AT NP     S ++LK        +    
Sbjct: 100 TKMMTSYVIGQALKAGKIGPEDMVTVGQDAWATGNPVFKGSSLMFLKPGDRVPVSKLTRG 159

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +  +S ND   A  ++++GS+  F  LM+    K+G+QNT ++   GL  + Q ++ARD 
Sbjct: 160 INLQSGNDACVAMADYVAGSQDAFVNLMNTYVSKLGLQNTHFQTVHGLDAQGQYSSARDM 219

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIV 253
           A++G  L ++ P  Y  +  ++F + N    N N LL +   N+DGIKTG+T  +G+N+V
Sbjct: 220 ALIGQALIRDVPDEYAIYKEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTDAAGYNLV 279

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            S       +++ V+G  T + R+ ++ +L+T
Sbjct: 280 ASATEGQMRLISAVLGGRTYKGRETESKKLLT 311


>gi|153838852|ref|ZP_01991519.1| penicillin-binding protein 5 [Vibrio parahaemolyticus AQ3810]
 gi|260900530|ref|ZP_05908925.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus AQ4037]
 gi|149747680|gb|EDM58590.1| penicillin-binding protein 5 [Vibrio parahaemolyticus AQ3810]
 gi|308107023|gb|EFO44563.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus AQ4037]
          Length = 389

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 118/213 (55%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + + +  + L+ Q+ +S+ A  +N    SK++++  T  +      
Sbjct: 62  PASLTKLMTAYVAGQEVNAGNISLDDQVVISRNAWAKNFPDSSKMFIEVNTSVSLSDLYR 121

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+ +S ND S A  E ++GSE  F  LM++ A ++G+ N+ + N  GL      +T  D
Sbjct: 122 GLVVQSGNDASVAIAEHVAGSEAGFVSLMNSWASQLGLTNSSFTNPHGLDSDGLYSTPHD 181

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A LG  + ++ P  Y  +S   F Y      N N LL ++  N+DG+KTGYT  +G+++
Sbjct: 182 IAKLGQAIIRDLPDIYPMYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYSL 241

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            TS    D  ++AVVMG  +   R+ ++ +L++
Sbjct: 242 ATSATNGDMRLIAVVMGAKSQSVRESESKQLLS 274


>gi|332091585|gb|EGI96666.1| D-alanyl-D-alanine carboxypeptidase dacD [Shigella dysenteriae
           155-74]
          Length = 301

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 209

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 210 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASGVDGQRRLIAVVMGADSAKGREE 269

Query: 279 KALELI 284
           +A +L+
Sbjct: 270 EARKLL 275


>gi|320177929|gb|EFW52913.1| D-alanyl-D-alanine carboxypeptidase [Shigella boydii ATCC 9905]
          Length = 388

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 209

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 210 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASGVDGQRRLIAVVMGADSAKGREE 269

Query: 279 KALELI 284
           +A +L+
Sbjct: 270 EARKLL 275


>gi|209694545|ref|YP_002262473.1| penicillin-binding protein 5 precursor (D-alanyl-D-alanin
           carboxypeptidase fraction A) [Aliivibrio salmonicida
           LFI1238]
 gi|208008496|emb|CAQ78667.1| penicillin-binding protein 5 precursor (D-alanyl-D-alanin
           carboxypeptidase fraction A) [Aliivibrio salmonicida
           LFI1238]
          Length = 391

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 118/212 (55%), Gaps = 4/212 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I + + S  + ++  + +SK A  +N    SK++++  +         
Sbjct: 63  PASLTKMMTSYVIGQEIASGNISMDDDVVISKNAWAKNFPGSSKMFIEVGSVVKVRDLNQ 122

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E ++GSE  F  LM+  +K + +QNT + N  GL   +  +T  D
Sbjct: 123 GIIVQSGNDACVAMAEHVAGSEDAFVDLMNAWSKTLNLQNTHFANVHGLDRDDLYSTPYD 182

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A++G  L ++ P+ Y+ +S + + Y      N N LL +K  N+DGIKTG+T  +G+N+
Sbjct: 183 MALIGQALIRDVPEEYRVYSEKSYTYNGITQYNRNGLLWDKSMNVDGIKTGHTDGAGYNL 242

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           V+S       +VAVVMG  +   R  ++ +L+
Sbjct: 243 VSSATEGKMRLVAVVMGTKSGNARKAESKKLL 274


>gi|170769785|ref|ZP_02904238.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii
           TW07627]
 gi|170121399|gb|EDS90330.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii
           TW07627]
          Length = 390

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 130/238 (54%), Gaps = 8/238 (3%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT 112
           S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + V + A A 
Sbjct: 40  SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAK 99

Query: 113 QNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
            NP     S ++LKE    +       LI  S ND   A  ++I+G +++F  +M+N A+
Sbjct: 100 DNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVDMMNNYAE 159

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           K+ +Q+T ++   GL    Q ++A D A+L   +    P +Y  +S +   +      N 
Sbjct: 160 KLHLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPDFYHMYSEKSLTWNGITQQNR 219

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R+++A +L+
Sbjct: 220 NGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLL 277


>gi|312963236|ref|ZP_07777720.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas fluorescens WH6]
 gi|311282502|gb|EFQ61099.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas fluorescens WH6]
          Length = 385

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 144/279 (51%), Gaps = 12/279 (4%)

Query: 27  NIQLMGK--ILFLSIIMISMASELH---AKPKYSS---IVIDV-NKNQMTGFKQDEPRYP 77
           NI  + K   L LS+I+   A  +    A P+ ++   +++D  + N +     D+   P
Sbjct: 2   NITTLAKRTCLLLSLIITPAAWAVEMVPASPQLAAKAWVLMDAASGNVLVENNGDQRLPP 61

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT YI    ++  ++  N  + VS+ A     S++++K  +  T    +  +I 
Sbjct: 62  ASLTKLMTAYIATLEIRRGQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIII 121

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E I+GSE  FA +M+     +GM N+ + N +GL +    ++A D AIL
Sbjct: 122 QSGNDASVALAEHIAGSEDAFADMMNKTVADLGMTNSHFMNPTGLPNPEHYSSAHDMAIL 181

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              + +  P +Y  +S ++F + N    N N LL +   +DG+KTG+T  +G+ +V+S  
Sbjct: 182 ARAIIRVDPVHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTEEAGYCMVSSAV 241

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTL 293
                ++AVV G  + Q R  +  +L+T    F E +T 
Sbjct: 242 RDGQRLIAVVFGTNSEQARAAETQKLLTYGFRFFETQTF 280


>gi|254521328|ref|ZP_05133383.1| D-alanyl-D-alanine carboxypeptidase [Stenotrophomonas sp. SKA14]
 gi|219718919|gb|EED37444.1| D-alanyl-D-alanine carboxypeptidase [Stenotrophomonas sp. SKA14]
          Length = 406

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 132/234 (56%), Gaps = 6/234 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +++D    Q + G    E   PAS+TK+MT Y+I   +++ K+  + Q+ +S+ A  +  
Sbjct: 58  VLMDYATGQVLAGENVHEQLAPASITKVMTSYVIAAEVKNGKVRADDQVMMSERAWREGG 117

Query: 116 SKLYLKEKTYFTTEQGIL-----ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           +        +   +   L      +  +S ND + A  E ++GSE+ FA LM++ A KIG
Sbjct: 118 AGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKIG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ + NA GL  +   +TA D A+LG  + +++P+ Y Y  I++F+  N    N N L
Sbjct: 178 MKDSHFVNAHGLTAQGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGNIKQPNRNLL 237

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           L +  ++DGIKTG+T  +G+ +++S +  D  ++AVV+G  + ++R   +L L+
Sbjct: 238 LWRDGSVDGIKTGHTSEAGYCLMSSAQRGDQRLIAVVLGGASEKQRADDSLALL 291


>gi|153832244|ref|ZP_01984911.1| penicillin-binding protein 6 [Vibrio harveyi HY01]
 gi|148871555|gb|EDL70410.1| penicillin-binding protein 6 [Vibrio harveyi HY01]
          Length = 388

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 117/204 (57%), Gaps = 4/204 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y++   +++ +L+ + ++ VS+ A +    + SK++++ K   T    + 
Sbjct: 60  PASLTKLMTAYVVGTEIKAGRLNWDDKVTVSENAWSAKFPDSSKMFIQPKDEITVANLMR 119

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E ++GSE  F  LM+  A K+ + +T + N+ GL  +   T+  D
Sbjct: 120 GVIIQSGNDACVALAEHVAGSEGAFVALMNGWADKLSLNDTYFVNSHGLDSEGIQTSPND 179

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A L   +  + P  Y  +S + F++      N NKLL +K  ++DG KTGYT N+G+++
Sbjct: 180 MATLMQAIINDVPDVYALYSEKVFKWNKITQYNRNKLLWDKSMDVDGGKTGYTSNAGYSL 239

Query: 253 VTSLRYKDDPIVAVVMGMPTSQER 276
           V+S +     +++VVMG P+ Q R
Sbjct: 240 VSSAKQGKMRLISVVMGTPSKQSR 263


>gi|330861526|emb|CBX71735.1| D-alanyl-D-alanine carboxypeptidase dacC [Yersinia enterocolitica
           W22703]
          Length = 428

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 141/264 (53%), Gaps = 15/264 (5%)

Query: 35  LFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIF 90
           L L  +  + A++  A P   +   +++D N  ++      + R  PASLTK+M+ Y+I 
Sbjct: 50  LLLLALPYAHAADSPAAPAIDAKAYVLMDYNSGKVLAEGNSDQRLDPASLTKIMSSYVIG 109

Query: 91  EYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVS 144
           + +++ K+H +  + V K A AT NP     S ++LK             ++ +S ND S
Sbjct: 110 QAIKAGKVHPDDLVTVGKDAWATGNPALRGSSLMFLKPGDQVKLSDLNKGIVIQSGNDAS 169

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  ++I+GS+  F  LM+N AK +G+ NT +    GL    Q +TA D A+LG  L ++
Sbjct: 170 IALADYIAGSQDSFVGLMNNYAKALGLNNTNFMTVHGLDAPGQYSTAHDMAVLGQALIRD 229

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDP- 262
            P  Y     ++F +      N N+LL   + N+DG+KTG+T  +G N+V S    D P 
Sbjct: 230 VPDEYALHKEKEFTFNKIRQINRNRLLWSTNLNVDGMKTGFTAGAGHNLVASA--TDGPM 287

Query: 263 -IVAVVMGMPTSQERDQKALELIT 285
            +++VV+G P+ + R  ++ +L+T
Sbjct: 288 RLISVVLGAPSDRVRFSESEKLLT 311


>gi|323177151|gb|EFZ62741.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 1180]
          Length = 390

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 35  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 91

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 92  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 151

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 152 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 211

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 212 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAIDGQRRLIAVVMGADSAKGREE 271

Query: 279 KALELI 284
           +A +L+
Sbjct: 272 EAKKLL 277


>gi|295399047|ref|ZP_06809029.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978513|gb|EFG54109.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 393

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 146/268 (54%), Gaps = 20/268 (7%)

Query: 29  QLMGKILFLSIIMISMASELHAKPK-------------YSSIVIDVNKNQMTGFKQ-DEP 74
           QL+  +LF S+ + +++S +HA+ K              S+I+I+ +   +   K  +E 
Sbjct: 4   QLIRLLLFASVFLFTISSYVHAEEKKSTARGIELANEARSAILIERDTGAVLYEKNANEK 63

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
             PAS+TK+MT+ +I E +   +L    ++  S+ AA+   S+++L+     T ++ +  
Sbjct: 64  LPPASMTKIMTMLLIMEAIDKGELSYKEKVRASEYAASMGGSQIFLEPGEEMTVDELLRG 123

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +   S ND S A  E I+GSE+ F  +M+ KAK++G++NT ++NA+GL  K   ++A D 
Sbjct: 124 IAIGSGNDASVALAERIAGSEEAFVEMMNKKAKELGLKNTSFQNATGLPAKGHYSSAHDM 183

Query: 195 AILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
           AI+   L K +    KY S     +R+   +   + N N+L+     +DG+KTG+T  + 
Sbjct: 184 AIMARELLK-YEDITKYTSKYEDYLRENTDKKFWLVNTNRLVKFYPGVDGLKTGFTSEAK 242

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           + +  + +     ++AVV G PT +ER+
Sbjct: 243 YCLTATAKKNGMRVIAVVFGAPTPKERN 270


>gi|260868661|ref|YP_003235063.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O111:H- str.
           11128]
 gi|257765017|dbj|BAI36512.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O111:H- str.
           11128]
          Length = 388

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 209

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 210 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAIDGQRRLIAVVMGADSAKGREE 269

Query: 279 KALELI 284
           +A +L+
Sbjct: 270 EAKKLL 275


>gi|24372747|ref|NP_716789.1| D-alanyl-D-alanine carboxypeptidase [Shewanella oneidensis MR-1]
 gi|24346818|gb|AAN54234.1|AE015560_7 D-alanyl-D-alanine carboxypeptidase [Shewanella oneidensis MR-1]
          Length = 390

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 125/214 (58%), Gaps = 6/214 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I + +++  +  +  + +SK A ++N    SK++++            
Sbjct: 62  PASLTKMMTSYVIGQEIKAGNVSPDDDVTISKNAWSKNFSDSSKMFIEVGKTVKVSDLNR 121

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E I+G+E  F  +M++ +K++GM+++ ++N+ GL  +N  TTA D
Sbjct: 122 GIIIQSGNDACVAMAEHIAGTEGAFVDMMNSWSKQLGMRDSYFENSHGLDSENHKTTAYD 181

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFN 251
            A+LG  L ++ P+ Y+ +S + + +      N N LL  N M N+DGIKTG+T  +G+N
Sbjct: 182 MALLGAALIRDVPEEYRIYSEKYYTFNGIKQYNRNGLLWDNSM-NVDGIKTGHTSGAGYN 240

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +V S       +++VVMG  +   R  ++ +L+T
Sbjct: 241 LVASATKDGMRLISVVMGTQSEAARKAESKKLLT 274


>gi|212709668|ref|ZP_03317796.1| hypothetical protein PROVALCAL_00715 [Providencia alcalifaciens DSM
           30120]
 gi|212687479|gb|EEB47007.1| hypothetical protein PROVALCAL_00715 [Providencia alcalifaciens DSM
           30120]
          Length = 401

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 144/268 (53%), Gaps = 15/268 (5%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTL 86
           +G  LF+ +     A++    P+  +   +++D N  + +     DE   PASLTK+MT 
Sbjct: 15  IGLSLFVVMSASVYAAQTPVAPQVDAKAFVLMDYNSGKILASSNPDERLDPASLTKIMTS 74

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSA 140
           Y++ + +++ K+     + VS+ A AT NP     S ++LK K   +       ++ +S 
Sbjct: 75  YVVGQAVKAGKITPQDMVTVSEAAWATGNPILKGSSLMFLKPKDRVSVLDLNKGVVIQSG 134

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND S A  E ++GS++ F  LM+   +KIG+ NT +K   GL    Q +TARD A+L   
Sbjct: 135 NDASIALAEHVAGSQESFVDLMNGYVQKIGLTNTHFKTVHGLDSDGQYSTARDMAVLAQA 194

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYK 259
           L ++ P  Y     ++F + N    N N+LL   +  +DG+KTG+T  +G N+V S    
Sbjct: 195 LIRDVPDEYVLHKEKEFTFNNIRQPNRNRLLWSQNLKVDGVKTGHTSGAGHNLVAS--AT 252

Query: 260 DDP--IVAVVMGMPTSQERDQKALELIT 285
           D P  +++VV+G P+ + R  ++ +L+T
Sbjct: 253 DGPMRLISVVLGAPSDRVRFAESEKLLT 280


>gi|323977820|gb|EGB72906.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TW10509]
          Length = 388

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 134/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 209

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R+ 
Sbjct: 210 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGRED 269

Query: 279 KALELI 284
           +A +L+
Sbjct: 270 EARKLL 275


>gi|117619099|ref|YP_857750.1| penicillin-binding protein [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117560506|gb|ABK37454.1| penicillin-binding protein [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 396

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 137/254 (53%), Gaps = 13/254 (5%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKL 98
           +++  A E+ AK   + I+ID    Q+   +  E R P ASLTKMMT YII + L    +
Sbjct: 32  VVVPAAPEISAK---AHILIDYYSGQVLAEQNAEERLPPASLTKMMTSYIIGQELLKGNI 88

Query: 99  HLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                + +S+ A ++N    SK++++     + +     +I +S ND   A  EF++GS 
Sbjct: 89  KRTDMVTISQNAWSKNYSDSSKMFIEVGKQVSVDDLNKGIIIQSGNDACVAMAEFLAGST 148

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             FA LM++ A K+GM ++ + N  GL  +   +TA D A LG  L ++ P  YK ++ +
Sbjct: 149 DSFASLMNSWAAKLGMNDSHFMNPHGLDAEGHYSTAHDMARLGQALIRDLPDEYKIYAQK 208

Query: 216 KFRYRNRIITNHNK---LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMP 271
            F +    IT HN+   L ++   +DGIKTG+    G+N+V+S    +   ++AVV+G  
Sbjct: 209 SFVFNG--ITQHNRNRLLWDQSLQVDGIKTGHVSQVGYNLVSSATNNEGMRLIAVVLGAS 266

Query: 272 TSQERDQKALELIT 285
           +   R  ++ +L+T
Sbjct: 267 SEASRAAESKKLLT 280


>gi|163801380|ref|ZP_02195279.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. AND4]
 gi|159174869|gb|EDP59669.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. AND4]
          Length = 388

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 117/204 (57%), Gaps = 4/204 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y++ + ++S +L  + ++ VS+ A +    + SK++++     T    + 
Sbjct: 60  PASLTKLMTAYVVGQEIKSGRLQWDDKVTVSENAWSAKFPDSSKMFIQPNDEITIANLMR 119

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E ++GSE  F  LM+  A K+ + +T + N+ GL  +   T+  D
Sbjct: 120 GVIIQSGNDACVALAEHVAGSEGAFVSLMNGWADKLSLNDTYFVNSHGLDSEGIQTSPND 179

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A L   +  + P+ Y  +S + F++      N NKLL +K  ++DG KTGYT N+G+++
Sbjct: 180 MATLMQAIINDVPEVYALYSEKVFKWNKITQYNRNKLLWDKSMDVDGGKTGYTSNAGYSL 239

Query: 253 VTSLRYKDDPIVAVVMGMPTSQER 276
           V+S +     +++VVMG P+ Q R
Sbjct: 240 VSSAKQGKMRLISVVMGTPSKQSR 263


>gi|238785719|ref|ZP_04629693.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia bercovieri ATCC
           43970]
 gi|238713359|gb|EEQ05397.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia bercovieri ATCC
           43970]
          Length = 383

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 137/253 (54%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   + I+ID N  + +     D  R PASLTKMMT Y+I + +++ K+ 
Sbjct: 17  MIPGVPQIDAE---AYILIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGKIG 73

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V K A AT NP     S ++LK        +    +  +S ND   A  ++++G
Sbjct: 74  PEDMVTVGKDAWATGNPEFQGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAG 133

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+N    +G++NT +K   GL  + Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 134 SQDSFVNLMNNYVNALGLKNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAIYK 193

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F + N    N N LL +   N+DGIKTG+T ++G+N+V S       +++ V+G  T
Sbjct: 194 EKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTASAGYNLVASATDGQMRLISAVLGGRT 253

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 254 YKGRETESKKLLT 266


>gi|114046558|ref|YP_737108.1| penicillin-binding protein 6 [Shewanella sp. MR-7]
 gi|113888000|gb|ABI42051.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Shewanella sp. MR-7]
          Length = 391

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 125/214 (58%), Gaps = 6/214 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I + +++  +  +  + +SK A ++N    SK++++            
Sbjct: 63  PASLTKMMTSYVIGQEIKAGNVSPDDDVTISKNAWSKNFSDSSKMFIEVGKTVKVSDLNR 122

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E I+G+E  F  +M++ AK++GM+++ ++N+ GL  +N  +TA D
Sbjct: 123 GIIIQSGNDACVAMAEHIAGTEGAFVDMMNSWAKQLGMRDSYFENSHGLDAENHKSTAYD 182

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFN 251
            A+LG  L ++ P+ Y+ +S + + +      N N LL  N M N+DGIKTG+T  +G+N
Sbjct: 183 MALLGAALIRDVPEEYRVYSEKYYTFNGIKQYNRNGLLWDNSM-NVDGIKTGHTSGAGYN 241

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +V S       +++VVMG  +   R  ++ +L+T
Sbjct: 242 LVASATKDGMRLISVVMGTQSEAARKAESKKLLT 275


>gi|262372977|ref|ZP_06066256.1| penicillin-binding protein 6 [Acinetobacter junii SH205]
 gi|262313002|gb|EEY94087.1| penicillin-binding protein 6 [Acinetobacter junii SH205]
          Length = 382

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 137/248 (55%), Gaps = 7/248 (2%)

Query: 45  ASELHAKPKY---SSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           A+ L A P+    S +++D    Q+   K ++E   PAS+TKMMT YII + L   +L  
Sbjct: 20  ATVLSAPPELNNKSYVLMDYETGQILAAKNENEKLAPASMTKMMTSYIIEQKLLKGELTE 79

Query: 101 NTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           N Q+ ++++A    +   S +Y+      T  + +  +I +S ND S A  E I+G+E  
Sbjct: 80  NEQVRMNESAWCRGSSTESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAGNEGT 139

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           FA +M+ +AK++GM NT + N++G+      +TA+D A+L   + K+  +YY  +S ++F
Sbjct: 140 FAHMMNQEAKRVGMVNTHFINSTGMPADGHYSTAKDMAVLAQHIIKDSSKYYPIYSEKEF 199

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
            +      N N LL    ++DG+KTG+T  +G+ + TS +     +++V+ G P+  ER 
Sbjct: 200 TFNGIKQGNRNALLYTDPSVDGLKTGHTEEAGYCLTTSSKRGPMRLISVIFGTPSMNERA 259

Query: 278 QKALELIT 285
            +   L+ 
Sbjct: 260 SQTRTLLA 267


>gi|56697577|ref|YP_167946.1| D-alanyl-D-alanine carboxypeptidase [Ruegeria pomeroyi DSS-3]
 gi|56679314|gb|AAV95980.1| D-alanyl-D-alanine carboxypeptidase [Ruegeria pomeroyi DSS-3]
          Length = 388

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 110/204 (53%), Gaps = 5/204 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   PAS++K+MTLY+ FE L+  +L L+ ++PVS+ A +   S ++L        E  
Sbjct: 48  DEALPPASMSKLMTLYVTFEALRDGRLTLDERLPVSQHAMSYGGSTMFLNTTDRVRVEDL 107

Query: 132 ILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           +  +I  S ND      E +S  G+E  FA  M+ +A+++GM  + + N++G      + 
Sbjct: 108 LRGIIVLSGNDACAVIAEALSPDGTEAGFARFMTKRAQQMGMTRSTFANSNGWPAAGHLM 167

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI---ITNHNKLLNKMHNIDGIKTGYTR 246
           +  D A+L   L  +FP+YY  F+  +F +  R    + N N LL      DG+KTG+T 
Sbjct: 168 SVHDLAVLANRLITDFPEYYPLFAETEFAFDGRAPSNVRNRNPLLKLDIGADGLKTGHTA 227

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGM 270
            +G+ +V S R  D  ++ V+ G+
Sbjct: 228 EAGYGLVGSARQGDRRVIFVLTGL 251


>gi|329905874|ref|ZP_08274257.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547445|gb|EGF32266.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 403

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 137/237 (57%), Gaps = 7/237 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S +++D    Q+   +    R  PASLTK+MT Y+ F+ ++ K+L L   + VS  A   
Sbjct: 54  SWLLLDTTSGQVLASQDPTMRIEPASLTKIMTAYVTFQAIKEKRLDLAQMVNVSVRAWKV 113

Query: 114 NPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +PS  K+++   T  + +  +  L+ +S ND + A  E ++G+E+ F +LM+ +AK++G+
Sbjct: 114 DPSSSKMFIDPATPVSVDDLLHGLMVQSGNDAAVALAEAVAGTEEAFVVLMNREAKRMGL 173

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
            NT + N  GL  ++  +TA+D + L   +  ++P++YK  S++ F Y      N N+LL
Sbjct: 174 TNTQFGNPHGLPSQSNYSTAQDLSKLAAAVITDYPEFYKIDSVKSFTYNKITQPNRNRLL 233

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP----IVAVVMGMPTSQERDQKALELI 284
               ++DG+KTG+T  +G+ I+ S +  +      +++VV+G  + Q R Q++ +L+
Sbjct: 234 WLDPSVDGMKTGHTEAAGYCIIASAKRPNGSGERRLISVVLGANSDQSRTQESQKLL 290


>gi|153803461|ref|ZP_01958047.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MZO-3]
 gi|124121011|gb|EAY39754.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MZO-3]
          Length = 389

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 133/237 (56%), Gaps = 16/237 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + ++   +H + ++ +S  A  +   + SK++++  TY        
Sbjct: 62  PASLTKLMTSYVAGQEMKRGNIHADDKVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYR 121

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL +    +T  D
Sbjct: 122 GLIVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYD 181

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK---LLNKMHNIDGIKTGYTRNSGF 250
            A+LG  + ++ P+ Y  +S   F Y    IT HN+   L ++  N+DG+KTGYT  +G+
Sbjct: 182 IALLGRAIIRDLPEIYPLYSELSFTYNG--ITQHNRNGLLRDRSMNVDGMKTGYTSGAGY 239

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKDNL 304
           ++ +S    +  +++VVMG  + + R+ ++ +L++    F E  T      H+KD++
Sbjct: 240 SLXSSATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVT-----PHQKDSV 291


>gi|251796348|ref|YP_003011079.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. JDR-2]
 gi|247543974|gb|ACT00993.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. JDR-2]
          Length = 405

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 123/213 (57%), Gaps = 6/213 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +I E L   K+ L  ++P S+ AA+   S+++L+     T ++ +  + 
Sbjct: 80  PASITKVMTMLLIMEALDDGKIKLTDKVPTSEYAASMGGSQIFLEPGEEMTVDEMLKGIA 139

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND S A  E ++GSE++F ++M+ KA+++G+QNT + N +GL   +  T+A D A+
Sbjct: 140 MASGNDASVAMAEKLAGSEQQFVVMMNEKAQQLGLQNTHFANCNGLPAADHYTSAHDIAV 199

Query: 197 LGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +   L K+  +  KY       +RK   +   + N NKL+      DG+KTG+T  + F 
Sbjct: 200 MSRELLKH-SEITKYTGSYQDYLRKTSEKPFWLVNTNKLVRFYSGADGLKTGFTNEAKFC 258

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +  + +  +  ++AVVMG P ++ R+ +  +++
Sbjct: 259 LTATAKRDNLRVIAVVMGEPNTKTRNAEVSQML 291


>gi|116252224|ref|YP_768062.1| penicillin-binding protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115256872|emb|CAK07966.1| putative penicillin-binding protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 397

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 116/223 (52%), Gaps = 11/223 (4%)

Query: 63  KNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSK 117
           KN+  GF       PASL K+MT+ ++FE L   ++ L+T+ PVS+ A     A    + 
Sbjct: 50  KNEDQGFS------PASLAKLMTMDLVFEALTKGQITLDTEYPVSEYAWRTGGAPSRAAT 103

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           ++   K+    E  I  +  + AND      E ++GSE++FA+ M+ +A+++GM+   + 
Sbjct: 104 MFASLKSRVRVEDLIKGVAIQGANDSCIILAEGMAGSEQQFAVSMTRRARELGMEKAEFG 163

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNI 237
           N++GL D     TAR+   L   L++ +P  Y YF+   F +      N N LL      
Sbjct: 164 NSTGLPDGKSKVTAREMVTLAAALQQTYPNLYPYFAQPDFEWNKIFQRNRNPLLGLDIGA 223

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           DG+ TG+T   G++IV S+      +   + G+ + +ER ++A
Sbjct: 224 DGLATGFTEGEGYSIVASVERDGRRLFVALAGIASDKERTEEA 266


>gi|229592798|ref|YP_002874917.1| putative cell division-like protein [Pseudomonas fluorescens SBW25]
 gi|229364664|emb|CAY52594.1| putative cell division-related protein [Pseudomonas fluorescens
           SBW25]
          Length = 385

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 137/260 (52%), Gaps = 7/260 (2%)

Query: 38  SIIMISMASELHAKPKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSK 96
           ++ M+  + +L AK   S +++D  + N +     D+   PASLTK+MT YI    ++  
Sbjct: 24  AVEMVPASPQLAAK---SWVLMDAASGNVLVESNGDQRLPPASLTKLMTAYIATLEIRRG 80

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           ++  N  + VS+ A     S++++K  +  T    +  +I +S ND S A  E I+GSE 
Sbjct: 81  QIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDASVALAEHIAGSED 140

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            FA +M+     +GM N+ + N +GL +    ++A D AIL   + +  P +Y  +S ++
Sbjct: 141 AFADMMNKTVADLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAIIRVDPVHYAIYSQKE 200

Query: 217 FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           F + N    N N LL +   +DG+KTG+T  +G+ +V+S       ++AVV G  + Q R
Sbjct: 201 FFWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGQRLIAVVFGTNSEQAR 260

Query: 277 DQKALELIT---SFLEKKTL 293
             +  +L+T    F E +T 
Sbjct: 261 AAETQKLLTYGFRFFETQTF 280


>gi|161613330|ref|YP_001587295.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161362694|gb|ABX66462.1| hypothetical protein SPAB_01041 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 388

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 138/261 (52%), Gaps = 8/261 (3%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           L+   +S A +  A    + +++D    Q +T   + + R PASLTK+MT Y++   + S
Sbjct: 20  LAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDS 79

Query: 96  KKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            ++  +  + V + A A  NP     S ++LKE    +       LI  S ND   A  +
Sbjct: 80  HRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALAD 139

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
           +I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D A+L   +    P++Y
Sbjct: 140 YIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFY 199

Query: 210 KYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +S +   +      N N LL +K  +IDG+KTG+T  +GFN++ S       ++AVVM
Sbjct: 200 HMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNLIASAVDGQRRLIAVVM 259

Query: 269 GMPTSQERDQKALELITSFLE 289
           G  +S+ R+++A +L+   L+
Sbjct: 260 GAKSSKGREEQARKLLQWGLQ 280


>gi|153855284|ref|ZP_01996450.1| hypothetical protein DORLON_02464 [Dorea longicatena DSM 13814]
 gi|149752283|gb|EDM62214.1| hypothetical protein DORLON_02464 [Dorea longicatena DSM 13814]
          Length = 393

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 130/243 (53%), Gaps = 17/243 (6%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+++ +  Q+   K  DE   PAS+TK+MTL +IF+ L S ++ L  ++  S+ AA+ 
Sbjct: 42  SAILMEASTGQIIYEKNPDEKLPPASVTKVMTLLLIFDALDSGQIKLGDEVTTSEYAASM 101

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+     T +  I  +   SAND      E+I G+E++F   M+ +AK +GM+N
Sbjct: 102 GGSQVFLEPGETQTVDTLIKCISVASANDACVTMAEYICGNEEEFVTKMNKRAKDLGMKN 161

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII--------- 224
           T + N +GL     +TTARD A++   L   +PQ + Y +I    +   II         
Sbjct: 162 THFVNCNGLDADGHLTTARDIALMSKELITTYPQIFDYCNI----WMENIIHKTQKGESE 217

Query: 225 ---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
              TN NKL+ +     G+KTG T  + F +  + R  D  ++AV+M    S+ R + A+
Sbjct: 218 FGLTNTNKLIRQYEYATGLKTGSTSKAKFCVSATGRKDDIDLIAVIMAADDSKARVRDAI 277

Query: 282 ELI 284
            L+
Sbjct: 278 TLL 280


>gi|119477453|ref|ZP_01617644.1| D-alanyl-D-alanine carboxypeptidase [marine gamma proteobacterium
           HTCC2143]
 gi|119449379|gb|EAW30618.1| D-alanyl-D-alanine carboxypeptidase [marine gamma proteobacterium
           HTCC2143]
          Length = 384

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 135/257 (52%), Gaps = 8/257 (3%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           I+ID +  ++   K  DE   PASLTK+MT Y++   L    +     + +S+ A  QNP
Sbjct: 36  ILIDADSGRVITEKNADEKLPPASLTKLMTSYVLSYELAEGNVANTDMVTISENAWAQNP 95

Query: 116 -----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S ++++       +     ++  S ND S A  E ++GSE  FA +M+  A  +G
Sbjct: 96  TFAGSSLMWIEVGKQVNLKDLHKGVVISSGNDASVAVAEHLAGSESAFADVMNQHAALLG 155

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M  + + NA GL D     TARD AIL   + K +P+ Y  +S   + Y N   TN N+L
Sbjct: 156 MTGSHFVNAHGLPDPEHYMTARDLAILSKAILK-YPEEYALYSQPDYTYNNITQTNRNRL 214

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L K  ++DG+KTG+T  +GF +V+S +     +++VVMG  +   R+ ++ +L+ S+  +
Sbjct: 215 LWKDDSVDGLKTGHTEEAGFCLVSSAKRNGMRLISVVMGAKSQSAREVESQKLL-SYGFR 273

Query: 291 KTLKHQQTHRKDNLSST 307
               HQ     D L++T
Sbjct: 274 YFETHQLYSTGDALTAT 290


>gi|296133162|ref|YP_003640409.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola sp. JR]
 gi|296031740|gb|ADG82508.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola potens JR]
          Length = 389

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 146/269 (54%), Gaps = 17/269 (6%)

Query: 29  QLMGKILFLSIIMISMASELHAKPK---------YSSIVIDVNKNQMTGFKQ-DEPRYPA 78
           +L+G  L  ++I I   ++  A P+          S+I+ID    ++   K  D  R PA
Sbjct: 7   KLIGLFLLTTMITILFPTQGFAAPEQQPLLETTAESAILIDAVTGKVLFEKAADVERPPA 66

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           S+TK+MTL +  E L   K+ L+ ++  S+ A+    S++YL+     +  + ++++   
Sbjct: 67  SVTKVMTLLVALEQLAKGKISLSDKVVTSENASGMGGSQVYLEPNEELSMREMLISIAVG 126

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           SAND   A  E I+GS + +  +M++KAK++G+++T + NA GL  +   T+ARD   L 
Sbjct: 127 SANDACVAVAEHIAGSHEAYVKMMNDKAKELGLKHTHFANAYGLPAEGHYTSARD---LA 183

Query: 199 ILLRK--NFPQYYKYFSIRKFRYRNR--IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
           +++R+   +P + K  SI+++  R    ++ N NKLL      DG KTG+T  + + + +
Sbjct: 184 VMMREALKYPLFSKLTSIKRYDLRGGEFVLWNTNKLLWWYDGCDGGKTGWTSEAKYCLAS 243

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           + +     ++AVVM  P  +   ++++ L
Sbjct: 244 TCKRNGLRLIAVVMATPEPRSHFRESMRL 272


>gi|327193414|gb|EGE60313.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli
           CNPAF512]
          Length = 360

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 120/224 (53%), Gaps = 13/224 (5%)

Query: 63  KNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSK 117
           KN+  GF       PASL K+MT+ ++FE +   ++ L+T+ PVS+ A     A    + 
Sbjct: 13  KNEDQGFS------PASLAKLMTMDLVFEAVTKGQITLDTEYPVSEYAWRTGGAPSRTAT 66

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           ++   K+    E  I  +  + AND      E ++GSE++FA  M+ +A++IGM   ++ 
Sbjct: 67  MFAALKSRVRVEDLIKGIAIQGANDSCIILAEGMAGSEQQFAESMTRRAREIGMDKAVFG 126

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT-NHNKLLNKMHN 236
           N++GL D     TAR+   L   L++++P  Y YF+   F + NRI   N N LL     
Sbjct: 127 NSTGLPDGKSKVTAREMVTLAAALQQSYPNLYPYFAQPDFEW-NRIFQRNRNPLLGLDLG 185

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
            DG+ TG+T   G++IV S++     +   + G+ + +ER ++A
Sbjct: 186 ADGLATGFTEGEGYSIVASVQRDGRRLFLALAGIASDKERTEEA 229


>gi|194367218|ref|YP_002029828.1| Serine-type D-Ala-D-Ala carboxypeptidase [Stenotrophomonas
           maltophilia R551-3]
 gi|194350022|gb|ACF53145.1| Serine-type D-Ala-D-Ala carboxypeptidase [Stenotrophomonas
           maltophilia R551-3]
          Length = 406

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 137/250 (54%), Gaps = 11/250 (4%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +++D    Q + G   +E   PAS+TK+MT Y+I   +++ K+  + Q+ +S+ A  +  
Sbjct: 58  VLMDYATGQVLAGENINEQLAPASITKVMTSYVIAAEVKNGKVRPDDQVMMSERAWREGG 117

Query: 116 SKLYLKEKTYFTTEQGIL-----ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           +        +   +   L      +  +S ND + A  E ++GSE+ FA LM++ A KIG
Sbjct: 118 AGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKIG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+N+ + NA GL      ++A D A+LG  + +++P+ Y Y  I++F+  N    N N L
Sbjct: 178 MKNSHFVNAHGLTAPGHHSSAYDLALLGRAMVRDYPETYAYNKIKEFQVGNIKQPNRNLL 237

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L +  ++DGIKTG+T  +G+ +++S +  D  +VAVV+G  + ++R   +L L+      
Sbjct: 238 LWRDGSVDGIKTGHTSEAGYCLMSSAQRGDQRLVAVVLGGQSEKQRADDSLALLN----- 292

Query: 291 KTLKHQQTHR 300
              +  +THR
Sbjct: 293 WGFRFFETHR 302


>gi|37525520|ref|NP_928864.1| penicillin-binding protein 6 precursor (D-alanyl-D-alanine
           carboxypeptidase fraction C) (DD-pept
           (DD-carboxypeptidase) (PBP-6)idase) [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36784948|emb|CAE13866.1| penicillin-binding protein 6 precursor (D-alanyl-D-alanine
           carboxypeptidase fraction C) (DD-pept
           (DD-carboxypeptidase) (PBP-6)idase) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 400

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/212 (34%), Positives = 117/212 (55%), Gaps = 7/212 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + +++ K+     + V K A AT NP     S ++LK    
Sbjct: 59  DERLDPASLTKIMTSYVVGQAIKAGKITPEDIVTVGKDAWATGNPILKGSSLMFLKPGDR 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
                    ++ +S ND S A  ++++GS+  F  LM+N AK +G+ NT ++   GL  +
Sbjct: 119 VKVIDLNHGVVVQSGNDASIALADYVAGSQDVFVSLMNNYAKALGLTNTHFRTVHGLDAE 178

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGY 244
            Q +TARD A+L   + ++ P  Y     + F +      N N+LL NK  N+DG+KTGY
Sbjct: 179 GQFSTARDMAVLSQAMIRDVPDEYALHKEKTFTFNKIQQPNRNRLLWNKNMNVDGVKTGY 238

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           T  +G+N+V S       +++VV+G P+ + R
Sbjct: 239 TSGAGYNLVASATEGPMRLISVVLGAPSDRIR 270


>gi|190575883|ref|YP_001973728.1| putative penicillin-binding protein [Stenotrophomonas maltophilia
           K279a]
 gi|190013805|emb|CAQ47442.1| putative penicillin-binding protein precursor [Stenotrophomonas
           maltophilia K279a]
          Length = 404

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 132/234 (56%), Gaps = 6/234 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +++D    Q + G    E   PAS+TK+MT Y+I   +++ K+  + Q+ +S+ A  +  
Sbjct: 56  VLMDYATGQVLAGENIHEQLAPASITKVMTSYVIAAEVKNGKVRADDQVMMSERAWREGG 115

Query: 116 SKLYLKEKTYFTTEQGIL-----ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           +        +   +   L      +  +S ND + A  E ++GSE+ FA LM++ A KIG
Sbjct: 116 AGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKIG 175

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ + NA GL  +   +TA D A+LG  + +++P+ Y Y  I++F+  N    N N L
Sbjct: 176 MKDSHFVNAHGLTAEGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGNIKQPNRNLL 235

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           L +  ++DGIKTG+T  +G+ +++S +  D  ++AVV+G  + ++R   +L L+
Sbjct: 236 LWRDGSVDGIKTGHTSEAGYCLMSSAQRGDQRLIAVVLGGASEKQRADDSLALL 289


>gi|157369441|ref|YP_001477430.1| D-alanyl-D-alanine carboxypeptidase fraction A [Serratia
           proteamaculans 568]
 gi|157321205|gb|ABV40302.1| Serine-type D-Ala-D-Ala carboxypeptidase [Serratia proteamaculans
           568]
          Length = 428

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 145/272 (53%), Gaps = 17/272 (6%)

Query: 31  MGKILFLSIIMISMASELHAK------PKYSS---IVIDVNKNQMTG-FKQDEPRYPASL 80
           +G ++ +S   ++ A +++ K      P+  +   ++ID N  ++      D  R PASL
Sbjct: 40  LGTVIAMSATSVAHADDVNIKTMIPGVPQIDAESYVLIDYNSGKVLAEMNADARRDPASL 99

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILA 134
           TKMMT Y+I + L++ K+     + V + A AT NP     S ++LK        +    
Sbjct: 100 TKMMTSYVIGQALKAGKIGQEDMVTVGQDAWATGNPVFKGSSLMFLKPGDRVPVSKLTRG 159

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +  +S ND   A  ++++GS+  F  LM+    K+G+QNT ++   GL  + Q ++ARD 
Sbjct: 160 INLQSGNDACVAMADYVAGSQDAFVNLMNTYVSKLGLQNTHFQTVHGLDAQGQYSSARDM 219

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIV 253
           A++G  L ++ P  Y  +  ++F + N    N N LL +   N+DGIKTG+T  +G+N+V
Sbjct: 220 ALIGQALIRDVPDEYAIYKEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTDAAGYNLV 279

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            S       +++ V+G  T + R+ ++ +L+T
Sbjct: 280 ASATEGQMRLISAVLGGRTYKGRETESKKLLT 311


>gi|168238798|ref|ZP_02663856.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194734763|ref|YP_002115095.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194710265|gb|ACF89486.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197288431|gb|EDY27812.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 390

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 138/261 (52%), Gaps = 8/261 (3%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           L+   +S A +  A    + +++D    Q +T   + + R PASLTK+MT Y++   + S
Sbjct: 22  LAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDS 81

Query: 96  KKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            ++  +  + V + A A  NP     S ++LKE    +       LI  S ND   A  +
Sbjct: 82  HRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALAD 141

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
           +I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D A+L   +    P++Y
Sbjct: 142 YIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFY 201

Query: 210 KYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +S +   +      N N LL +K  +IDG+KTG+T  +GFN++ S       ++AVVM
Sbjct: 202 HMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNLIASAVDGQRRLIAVVM 261

Query: 269 GMPTSQERDQKALELITSFLE 289
           G  +S+ R+++A +L+   L+
Sbjct: 262 GAKSSKGREEQARKLLQWGLQ 282


>gi|306814866|ref|ZP_07449028.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli NC101]
 gi|305852260|gb|EFM52712.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli NC101]
          Length = 388

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 134/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 209

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL  K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 210 NGITQQNRNGLLWAKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 269

Query: 279 KALELI 284
           +A +L+
Sbjct: 270 EARKLL 275


>gi|166710542|ref|ZP_02241749.1| D-alanyl-D-alanine carboxypeptidase precursor [Xanthomonas oryzae
           pv. oryzicola BLS256]
          Length = 401

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 128/225 (56%), Gaps = 8/225 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL--- 133
           PAS+TK+MT Y++   +++ K+  + Q+ +S+ A  +  +        +   +   L   
Sbjct: 74  PASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWREGGAGTDGSYSGFPVNQTARLEDM 133

Query: 134 --ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
              +  +S ND + A  E ++GSE+ FA LM++ A KIGM+++ + NA GL  +   +TA
Sbjct: 134 EKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKIGMKDSYFVNAHGLTAEGHHSTA 193

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            D A+LG  + +++P  Y Y  I++F+  +   +N N+LL +   +DGIKTG+T  +G+ 
Sbjct: 194 YDLAMLGRAMVRDYPDTYAYNKIKEFQVGSIKQSNRNRLLWRDPAVDGIKTGHTSEAGYC 253

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTL 293
           +++S +  D  ++AVVMG  + ++R   +L L+     F E  +L
Sbjct: 254 LLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNWGFRFFETHSL 298


>gi|238762044|ref|ZP_04623017.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia kristensenii
           ATCC 33638]
 gi|238699772|gb|EEP92516.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia kristensenii
           ATCC 33638]
          Length = 397

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/265 (32%), Positives = 142/265 (53%), Gaps = 16/265 (6%)

Query: 34  ILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYII 89
           +LFLS+   + A++    P   +   +++D N  ++      + R  PASLTK+M+ Y+I
Sbjct: 19  LLFLSLPY-AHAADSPVPPAIDAKAYVLMDYNSGKVLAEGNSDQRLDPASLTKIMSSYVI 77

Query: 90  FEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDV 143
            + +++ K+H +  + V K A AT NP     S ++LK             ++ +S ND 
Sbjct: 78  GQAIKAGKVHPDDLVTVGKDAWATGNPALRGSSLMFLKPGDQVKLSDLNKGIVIQSGNDA 137

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           S A  ++I+GS+  F  LM+  AK +G+ NT +    GL    Q +TA D A+LG  L +
Sbjct: 138 SIALADYIAGSQDSFVGLMNKYAKALGLNNTNFMTVHGLDAPGQYSTAHDMAVLGQALIR 197

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           + P  Y     ++F +      N N+LL N   N+DG+KTGYT  +G N+V S    D P
Sbjct: 198 DVPDEYALHKEKEFTFNKIRQINRNRLLWNTNINVDGMKTGYTTGAGHNLVASA--TDGP 255

Query: 263 --IVAVVMGMPTSQERDQKALELIT 285
             +++VV+G P+ + R  ++ +L+T
Sbjct: 256 MRLISVVLGAPSDRVRFSESEKLLT 280


>gi|114570005|ref|YP_756685.1| Serine-type D-Ala-D-Ala carboxypeptidase [Maricaulis maris MCS10]
 gi|114340467|gb|ABI65747.1| Serine-type D-Ala-D-Ala carboxypeptidase [Maricaulis maris MCS10]
          Length = 381

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 129/245 (52%), Gaps = 8/245 (3%)

Query: 56  SIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           ++++D    ++  F +  DE   PAS++KMMT+ ++ E +++  L L+ ++PVS+ A   
Sbjct: 32  AVILDAETGEVL-FSRNADEAMPPASMSKMMTVLMLIEAIEAGSLSLDDELPVSEYAWRT 90

Query: 111 --ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
             A    S ++L+  +    +  +  +I +S ND      E I GSE  FA +M+++A +
Sbjct: 91  GGAASGSSTMFLEVNSRARVDDLLRGIIIQSGNDACIVVAEAIGGSEAAFADMMTDRAHE 150

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           +G+ +  + N++G    +   +A D A L  +L ++ P YY  +S R+F Y      N N
Sbjct: 151 LGLTSASFANSTGWPHPDHRISALDLARLARILIEDHPDYYDIWSEREFTYNGIRQYNRN 210

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            LL      DG+KTG+T  SG+ +V S     +  + V  GM ++ +R  +A  ++ S L
Sbjct: 211 PLLGVFSGADGLKTGHTEESGYGLVGSAERDGERRIIVFNGMSSNNDRATEAERMMRSAL 270

Query: 289 EKKTL 293
              +L
Sbjct: 271 SDYSL 275


>gi|311030730|ref|ZP_07708820.1| D-alanyl-D-alanine carboxypeptidase [Bacillus sp. m3-13]
          Length = 387

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 136/241 (56%), Gaps = 11/241 (4%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+I+ +  Q+   K    + P AS+TK+MT+ +I E +   +L  + +I  S+ AA+ 
Sbjct: 37  SAILIERDTGQVLYEKNGHEKLPPASMTKIMTMLLIMEAIDKGELTWDEKIRTSEYAASM 96

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+     TT++ +  +   S ND S A  E I+GSE  F   M+ KAK++G++N
Sbjct: 97  GGSQIFLEPGEEMTTDEMLRGIAIASGNDASVAMAERIAGSEAAFVDRMNAKAKELGLEN 156

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHN 228
           T+++N +GL  KN  +TA D A++   L K F    KY       +R+   +   + N N
Sbjct: 157 TLFQNPTGLPAKNHYSTANDMAVMAKELLK-FEGITKYTGQYEDYLRQDSEKKFWLVNTN 215

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           KL+     +DG+KTG+T+ + + +  + +  +  ++AVV G PT ++R+ +    IT+ L
Sbjct: 216 KLVRFYPGVDGVKTGFTQEAKYCLTATAKKDNMRVIAVVFGAPTPKDRNAQ----ITNML 271

Query: 289 E 289
           +
Sbjct: 272 D 272


>gi|188534313|ref|YP_001908110.1| D-alanyl-D-alanine carboxypeptidase [Erwinia tasmaniensis Et1/99]
 gi|188029355|emb|CAO97232.1| D-alanyl-D-alanine carboxypeptidase [Erwinia tasmaniensis Et1/99]
          Length = 402

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 122/219 (55%), Gaps = 7/219 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQ 130
           PASLTKMM+ Y+I + L++ K+  +  + V   A AT NP     S ++LK        +
Sbjct: 66  PASLTKMMSSYVIGQALKAGKIGKDDLVTVGNDAWATGNPVLKGSSLMFLKPGDRIAVSE 125

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               ++ +S ND S A  ++++GS+  F  LM+N  + +G++NT +K   GL    Q +T
Sbjct: 126 LNKGIVIQSGNDASIALADYVAGSQDAFVGLMNNYVQTLGLKNTHFKTVHGLDADGQFST 185

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSG 249
           ARD A++G  L ++ P  Y     ++F + N    N N+LL   +  +DGIKTG+T  +G
Sbjct: 186 ARDMALIGQALIRDVPDEYALHKEKEFTFNNIRQHNRNRLLWSSNLQVDGIKTGHTSGAG 245

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            N+V S    D  +++VV+G  T   R +++ +L+T  L
Sbjct: 246 NNLVASAVEGDRRMISVVLGAATDAVRFRESEKLLTWGL 284


>gi|331677915|ref|ZP_08378590.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli H591]
 gi|331074375|gb|EGI45695.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli H591]
          Length = 390

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           ++HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 35  QIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 91

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 92  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 151

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 152 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 211

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 212 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 271

Query: 279 KALELI 284
           +A +L+
Sbjct: 272 EARKLL 277


>gi|167772329|ref|ZP_02444382.1| hypothetical protein ANACOL_03706 [Anaerotruncus colihominis DSM
           17241]
 gi|167665432|gb|EDS09562.1| hypothetical protein ANACOL_03706 [Anaerotruncus colihominis DSM
           17241]
          Length = 391

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 122/232 (52%), Gaps = 12/232 (5%)

Query: 52  PKYSSIVIDVNKNQMTG---FKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
           P  S+I+I+    Q TG   F++  DE   PAS+TK+MTL ++ E L S ++ L   +  
Sbjct: 44  PARSAILIE----QSTGRVLFEKNADEQLPPASITKVMTLLLVMEALDSGQIALGDMVTC 99

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
           S+ A +   S+++ K     + +  + A    SAND S A  E ++GSE+ F  LM+ KA
Sbjct: 100 SEHAQSMGGSQIWFKAGEQLSVDDLLKAAAISSANDASVALAEHVAGSEEAFVALMNEKA 159

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS--IRKFRYRNRII 224
            ++GM NT + NA+GL     +TTARD A +   L   +P+  +Y    + + R     +
Sbjct: 160 AQLGMTNTHFVNATGLDADGHLTTARDIAAMSRALLA-YPKITEYSGTWMSELRGGATQL 218

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
            N NKL+       G+KTG T  +G  +  S       ++AV +G PTS ER
Sbjct: 219 VNTNKLVRFYDGCTGLKTGTTDGAGSCLSASATRGGLSLIAVTLGSPTSAER 270


>gi|300722494|ref|YP_003711784.1| D-alanyl-D-alanine carboxypeptidase [Xenorhabdus nematophila ATCC
           19061]
 gi|297629001|emb|CBJ89586.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
           [Xenorhabdus nematophila ATCC 19061]
          Length = 402

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/238 (34%), Positives = 125/238 (52%), Gaps = 11/238 (4%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTKMMT Y+I   ++S K+     + + K A AT NP     S ++LK    
Sbjct: 61  DERLDPASLTKMMTSYVIGLAVKSGKISTEDWVTIGKDAWATGNPVLKGSSLMFLKPGDR 120

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
                    ++ +S ND S A  ++++GS+  F  LM+  +K +G+ NT +K   GL   
Sbjct: 121 VKVIDLNRGIVIQSGNDASIALADYVAGSQDSFVDLMNQYSKTLGLTNTHFKTVHGLDAA 180

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGY 244
            Q +TA D A+L   + ++ P+ Y     ++F + N    N N+LL NK  N+DG+KTG+
Sbjct: 181 GQYSTAHDMALLSQAMIRDVPEEYALNKEKEFTFNNIRQPNRNRLLWNKNMNVDGVKTGH 240

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEK-KTLKHQQT 298
           T  +GFN+V S       +++VV+G P+ + R    +K L     F E  K LK   T
Sbjct: 241 TSGAGFNLVASATEGPMRLISVVLGAPSDRMRFSDSEKLLSWGFRFYESAKPLKASDT 298


>gi|213619044|ref|ZP_03372870.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 305

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 136/256 (53%), Gaps = 8/256 (3%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           L+   +S A +  A    + +++D    Q +T   + + R PASLTK+MT Y++   + S
Sbjct: 22  LAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDS 81

Query: 96  KKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            ++  +  + V + A A  NP     S ++LKE    +       LI  S ND   A  +
Sbjct: 82  HRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALAD 141

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
           +I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D A+L   +    P++Y
Sbjct: 142 YIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFY 201

Query: 210 KYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +S +   +      N N LL +K  +IDG+KTG+T  +GFN++ S       ++AVVM
Sbjct: 202 HMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNLIASAVDGQRRLIAVVM 261

Query: 269 GMPTSQERDQKALELI 284
           G  +S+ R+++A +L+
Sbjct: 262 GAKSSKGREEQARKLL 277


>gi|293446369|ref|ZP_06662791.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli B088]
 gi|291323199|gb|EFE62627.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli B088]
 gi|324119040|gb|EGC12929.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1167]
          Length = 390

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           ++HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 35  QIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 91

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 92  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 151

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 152 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 211

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 212 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 271

Query: 279 KALELI 284
           +A +L+
Sbjct: 272 EARKLL 277


>gi|209919474|ref|YP_002293558.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli SE11]
 gi|209912733|dbj|BAG77807.1| penicillin binding protein 6 [Escherichia coli SE11]
          Length = 390

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           ++HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 35  QIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 91

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 92  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 151

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 152 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 211

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 212 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 271

Query: 279 KALELI 284
           +A +L+
Sbjct: 272 EARKLL 277


>gi|320086495|emb|CBY96266.1| DD-carboxypeptidase, penicillin-binding protein 6B [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 390

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 136/256 (53%), Gaps = 8/256 (3%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           L+   +S A +  A    + +++D    Q +T   + + R PASLTK+MT Y++   + S
Sbjct: 22  LAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDHAIDS 81

Query: 96  KKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            ++  +  + V + A A  NP     S ++LKE    +       LI  S ND   A  +
Sbjct: 82  HRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALAD 141

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
           +I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D A+L   +    P++Y
Sbjct: 142 YIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFY 201

Query: 210 KYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +S +   +      N N LL +K  +IDG+KTG+T  +GFN++ S       ++AVVM
Sbjct: 202 HMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNLIASAVDGQRRLIAVVM 261

Query: 269 GMPTSQERDQKALELI 284
           G  +S+ R+++A +L+
Sbjct: 262 GAKSSKGREEQARKLL 277


>gi|74312552|ref|YP_310971.1| D-alanyl-D-alanine carboxypeptidase [Shigella sonnei Ss046]
 gi|73856029|gb|AAZ88736.1| penicillin binding protein 6b [Shigella sonnei Ss046]
          Length = 390

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 134/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 35  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 91

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 92  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 151

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+    +    P++Y  +S +   +
Sbjct: 152 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVFSRAIIHGEPEFYHMYSEKSLTW 211

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 212 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 271

Query: 279 KALELI 284
           +A +L+
Sbjct: 272 EARKLL 277


>gi|200388770|ref|ZP_03215382.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|199605868|gb|EDZ04413.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
          Length = 390

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 136/256 (53%), Gaps = 8/256 (3%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           L+   +S A +  A    + +++D    Q +T   + + R PASLTK+MT Y++   + S
Sbjct: 22  LAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDS 81

Query: 96  KKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            ++  +  + V + A A  NP     S ++LKE    +       LI  S ND   A  +
Sbjct: 82  HRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALAD 141

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
           +I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D A+L   +    P++Y
Sbjct: 142 YIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFY 201

Query: 210 KYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +S +   +      N N LL +K  +IDG+KTG+T  +GFN++ S       ++AVVM
Sbjct: 202 HMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNLIASAVDGQRRLIAVVM 261

Query: 269 GMPTSQERDQKALELI 284
           G  +S+ R+++A +L+
Sbjct: 262 GAKSSKGREEQARKLL 277


>gi|157369871|ref|YP_001477860.1| Serine-type D-Ala-D-Ala carboxypeptidase [Serratia proteamaculans
           568]
 gi|157321635|gb|ABV40732.1| Serine-type D-Ala-D-Ala carboxypeptidase [Serratia proteamaculans
           568]
          Length = 401

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 133/239 (55%), Gaps = 12/239 (5%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           +++D N  ++      + R  PASLTK+M+ Y+I + +++ K+     + V K A AT N
Sbjct: 44  VLMDYNSGKILAEGNADTRLDPASLTKIMSSYVIGQAIKAGKIKPEDMVTVGKDAWATGN 103

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S +++K        +    ++ +S ND S A  ++++GS+  F  LM+N AK +
Sbjct: 104 PALRGSSLMFIKPGDQVPVMELNKGIVIQSGNDASIALADYVAGSQDSFVGLMNNYAKSL 163

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+QNT +    GL  + Q +TARD A+LG  L ++ P  Y     ++F +      N N+
Sbjct: 164 GLQNTHFLTVHGLDAEGQYSTARDMALLGQALIRDVPDEYALHKEKEFTFNKIRQVNRNR 223

Query: 230 LLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDP--IVAVVMGMPTSQERDQKALELIT 285
           LL   + ++DGIKTGYT  +G N+V S    D P  +++VV+G P+ + R  ++ +L+T
Sbjct: 224 LLWSTNLSVDGIKTGYTGGAGHNLVAS--ATDGPMRLISVVLGAPSDRIRFSESEKLLT 280


>gi|16765392|ref|NP_461007.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62180641|ref|YP_217058.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|167990972|ref|ZP_02572071.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168259641|ref|ZP_02681614.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|197251570|ref|YP_002147019.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|224583442|ref|YP_002637240.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|585694|sp|P37604|DACD_SALTY RecName: Full=D-alanyl-D-alanine carboxypeptidase dacD;
           Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
           Full=Penicillin-binding protein 6B; Short=PBP-6B; Flags:
           Precursor
 gi|16420593|gb|AAL20966.1| DD-carboxypeptidase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|62128274|gb|AAX65977.1| DD-carboxypeptidase, penicillin-binding protein 6b [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|197215273|gb|ACH52670.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|205330511|gb|EDZ17275.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205350814|gb|EDZ37445.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|224467969|gb|ACN45799.1| DD-carboxypeptidase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261247276|emb|CBG25100.1| penicillin-binding protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994112|gb|ACY88997.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158623|emb|CBW18134.1| penicillin-binding protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913053|dbj|BAJ37027.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321224707|gb|EFX49770.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322715112|gb|EFZ06683.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323130385|gb|ADX17815.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988997|gb|AEF07980.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 390

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 136/256 (53%), Gaps = 8/256 (3%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           L+   +S A +  A    + +++D    Q +T   + + R PASLTK+MT Y++   + S
Sbjct: 22  LAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDS 81

Query: 96  KKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            ++  +  + V + A A  NP     S ++LKE    +       LI  S ND   A  +
Sbjct: 82  HRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALAD 141

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
           +I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D A+L   +    P++Y
Sbjct: 142 YIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFY 201

Query: 210 KYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +S +   +      N N LL +K  +IDG+KTG+T  +GFN++ S       ++AVVM
Sbjct: 202 HMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNLIASAVDGQRRLIAVVM 261

Query: 269 GMPTSQERDQKALELI 284
           G  +S+ R+++A +L+
Sbjct: 262 GAKSSKGREEQARKLL 277


>gi|150390291|ref|YP_001320340.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus
           metalliredigens QYMF]
 gi|149950153|gb|ABR48681.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus
           metalliredigens QYMF]
          Length = 387

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 142/268 (52%), Gaps = 12/268 (4%)

Query: 28  IQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           ++LM   L L  ++    + L A+P      + I+ID    ++   K   E   PAS+TK
Sbjct: 7   LKLMSGCLILMTVLALNTTTLLAQPFELQSKAGILIDAATGEVLYEKNIHESLPPASVTK 66

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT+ +  E L + ++ LN ++ VS+ A++   ++LYL+     T E+ +  +  RSAND
Sbjct: 67  IMTMLLTMEALDTNRITLNDKVVVSERASSMGGTQLYLEPGEVKTVEELMKGIAIRSAND 126

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
              A GE ISGSE  F   M+ +AK++GM+NT + N +GL  +  +T+  D A++   L 
Sbjct: 127 ACVAIGEHISGSEDAFVQKMNERAKELGMKNTTFINTNGLPAEGHVTSVYDIALMSKELL 186

Query: 203 KNFPQYYKYFS------IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           K +P   K+ +      +   R   + + N N+L+       G+KTG+T+ +   +  S 
Sbjct: 187 K-YPDVQKWLTTWMDTVVVGKRESTQELVNTNRLIRTYKGATGLKTGFTQAALHCLSASA 245

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELI 284
              ++  +AVV+  PTSQ R  +A +L+
Sbjct: 246 TRGNNTFIAVVLAAPTSQVRFSEAAQLL 273


>gi|331653434|ref|ZP_08354435.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli M718]
 gi|331048283|gb|EGI20359.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli M718]
          Length = 390

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 35  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 91

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 92  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 151

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 152 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 211

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       +++VVMG  +++ R++
Sbjct: 212 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLISVVMGADSAKGREE 271

Query: 279 KALELI 284
           +A +L+
Sbjct: 272 EAKKLL 277


>gi|261821229|ref|YP_003259335.1| beta-lactamase [Pectobacterium wasabiae WPP163]
 gi|261605242|gb|ACX87728.1| Beta-lactamase [Pectobacterium wasabiae WPP163]
          Length = 401

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 123/221 (55%), Gaps = 7/221 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+M  Y+I + ++S K+    ++ V K A AT NP     S ++LK    
Sbjct: 60  DERLDPASLTKIMASYVIGQAIKSGKIRPTDEVTVGKDAWATGNPALRGSSLMFLKPGDR 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
               +    ++ +S ND S A  ++++GS+  F  LM+N AK + + NT +    GL   
Sbjct: 120 IPVSELNKGIVIQSGNDASIALADYVAGSQDAFVSLMNNYAKALNLTNTHFLTVHGLDAA 179

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGY 244
            Q +TARD A+LG  L ++ P+ Y     ++F + N    N N+LL   + N+DG+KTG+
Sbjct: 180 GQYSTARDMALLGQALIRDVPEEYALHKEKEFTFNNIRQPNRNRLLWSTNLNVDGVKTGH 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           T  +G N+V S    +  +++VV+G  T   R +++ +L+T
Sbjct: 240 TNGAGHNLVASATEGNMRLISVVLGAQTDAIRFRESEKLLT 280


>gi|168229376|ref|ZP_02654434.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194472812|ref|ZP_03078796.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194459176|gb|EDX48015.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|205335852|gb|EDZ22616.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 390

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 136/256 (53%), Gaps = 8/256 (3%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           L+   +S A +  A    + +++D    Q +T   + + R PASLTK+MT Y++   + S
Sbjct: 22  LAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDS 81

Query: 96  KKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            ++  +  + V + A A  NP     S ++LKE    +       LI  S ND   A  +
Sbjct: 82  HRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALAD 141

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
           +I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D A+L   +    P++Y
Sbjct: 142 YIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFY 201

Query: 210 KYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +S +   +      N N LL +K  +IDG+KTG+T  +GFN++ S       ++AVVM
Sbjct: 202 HMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNLIASAVDGQRRLIAVVM 261

Query: 269 GMPTSQERDQKALELI 284
           G  +S+ R+++A +L+
Sbjct: 262 GAKSSKGREEQARKLL 277


>gi|191167708|ref|ZP_03029516.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A]
 gi|190902221|gb|EDV61962.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A]
 gi|323948386|gb|EGB44371.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H120]
          Length = 388

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           ++HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  QIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 209

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 210 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 269

Query: 279 KALELI 284
           +A +L+
Sbjct: 270 EARKLL 275


>gi|28901151|ref|NP_800806.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260362712|ref|ZP_05775581.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus K5030]
 gi|260879998|ref|ZP_05892353.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus AN-5034]
 gi|260894673|ref|ZP_05903169.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus Peru-466]
 gi|28809664|dbj|BAC62639.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308086579|gb|EFO36274.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus Peru-466]
 gi|308091747|gb|EFO41442.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus AN-5034]
 gi|308112412|gb|EFO49952.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus K5030]
          Length = 389

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 117/213 (54%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + + +  + L+ Q+ +S+ A  +N    SK++++  T         
Sbjct: 62  PASLTKLMTAYVAGQEVNAGNISLDDQVVISRNAWAKNFPDSSKMFIEVNTSVPLSDLYR 121

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+ +S ND S A  E ++GSE  F  LM++ A ++G+ N+ + N  GL      +T  D
Sbjct: 122 GLVVQSGNDASVAIAEHVAGSEAGFVSLMNSWASQLGLTNSSFTNPHGLDSDGLYSTPHD 181

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A LG  + ++ P  Y  +S   F Y      N N LL ++  N+DG+KTGYT  +G+++
Sbjct: 182 IAKLGQAIIRDLPDIYPMYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYSL 241

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            TS    D  ++AVVMG  +   R+ ++ +L++
Sbjct: 242 ATSATNGDMRLIAVVMGAKSQSVRESESKQLLS 274


>gi|198246188|ref|YP_002216147.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197940704|gb|ACH78037.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|326623893|gb|EGE30238.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 390

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 136/256 (53%), Gaps = 8/256 (3%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           L+   +S A +  A    + +++D    Q +T   + + R PASLTK+MT Y++   + S
Sbjct: 22  LAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDS 81

Query: 96  KKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            ++  +  + V + A A  NP     S ++LKE    +       LI  S ND   A  +
Sbjct: 82  HRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALAD 141

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
           +I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D A+L   +    P++Y
Sbjct: 142 YIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFY 201

Query: 210 KYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +S +   +      N N LL +K  +IDG+KTG+T  +GFN++ S       ++AVVM
Sbjct: 202 HMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNLIASAVDGQRRLIAVVM 261

Query: 269 GMPTSQERDQKALELI 284
           G  +S+ R+++A +L+
Sbjct: 262 GAKSSKGREEQARKLL 277


>gi|218548358|ref|YP_002382149.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia
           fergusonii ATCC 35469]
 gi|218355899|emb|CAQ88514.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia fergusonii ATCC 35469]
          Length = 400

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 126/227 (55%), Gaps = 19/227 (8%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V + A AT NP     S ++LK    
Sbjct: 59  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGRDAWATGNPALRGSSVMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 119 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 178

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLL--NKMHNID 238
            Q +TARD A+L   L  + P+ Y     K F+  K R  NR     N+LL  + +H +D
Sbjct: 179 GQFSTARDMALLSKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLH-VD 232

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           G+KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 233 GLKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279


>gi|188492414|ref|ZP_02999684.1| penicillin binding protein 6B [Escherichia coli 53638]
 gi|188487613|gb|EDU62716.1| penicillin binding protein 6B [Escherichia coli 53638]
          Length = 388

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 135/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           ++HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  QIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 209

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 210 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 269

Query: 279 KALELI 284
           +A +L+
Sbjct: 270 EARKLL 275


>gi|332977441|gb|EGK14217.1| serine-type D-Ala-D-Ala carboxypeptidase [Desmospora sp. 8437]
          Length = 395

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 125/208 (60%), Gaps = 6/208 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ ++ E L+  ++    ++  S+ A++   S+++L+       E  + A+ 
Sbjct: 59  PASITKIMTMLLVMEALEKGQISYEDRVRTSEYASSMGGSQIFLETGEVMKLEDLLKAVA 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             SAND S A  E ++G+E++F  +M+ +A+++GM++T ++N +GL   +  +TARD AI
Sbjct: 119 VGSANDASVALAEHLAGTEERFVEMMNRRAEELGMKDTRFQNPNGLPASDHYSTARDIAI 178

Query: 197 LGILLRKN-----FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +   L K+     F + Y+ + +RK   +   + N NKL+     +DG+KTG+TR +GF 
Sbjct: 179 MSRELLKHREITRFTKTYEDY-LRKESKKPFWLVNTNKLVKFYEGLDGLKTGFTREAGFC 237

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           +  + + +D   +AVVMG P  + R+++
Sbjct: 238 LAATAKRRDLRAIAVVMGEPDVKARNRE 265


>gi|238913456|ref|ZP_04657293.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 390

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 136/256 (53%), Gaps = 8/256 (3%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           L+   +S A +  A    + +++D    Q +T   + + R PASLTK+MT Y++   + S
Sbjct: 22  LAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDS 81

Query: 96  KKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            ++  +  + V + A A  NP     S ++LKE    +       LI  S ND   A  +
Sbjct: 82  HRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALAD 141

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
           +I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D A+L   +    P++Y
Sbjct: 142 YIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFY 201

Query: 210 KYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +S +   +      N N LL +K  +IDG+KTG+T  +GFN++ S       ++AVVM
Sbjct: 202 HMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNLIASAVDGQRRLIAVVM 261

Query: 269 GMPTSQERDQKALELI 284
           G  +S+ R+++A +L+
Sbjct: 262 GAKSSKGREEQARKLL 277


>gi|21232885|ref|NP_638802.1| penicillin-binding protein 6 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767044|ref|YP_241806.1| penicillin-binding protein 6 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188990136|ref|YP_001902146.1| exported serine-type D-Ala-D-Ala carboxypeptidase [Xanthomonas
           campestris pv. campestris str. B100]
 gi|21114716|gb|AAM42726.1| penicillin-binding protein 6 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572376|gb|AAY47786.1| penicillin-binding protein 6 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167731896|emb|CAP50080.1| exported serine-type D-Ala-D-Ala carboxypeptidase [Xanthomonas
           campestris pv. campestris]
          Length = 403

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 135/248 (54%), Gaps = 9/248 (3%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S I++D    Q + G    +   PAS+TK+MT Y++   +++ K+  + Q+ +S+ A  +
Sbjct: 53  SWILMDYATGQVLAGENIHQELAPASITKVMTSYVVAAEIKNGKISRDDQVMMSERAWRE 112

Query: 114 NPSKLYLKEKTYFTTEQGIL-----ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
             +        +   +   L      +  +S ND + A  E ++GSE+ FA LM++ A K
Sbjct: 113 GGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAK 172

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           IGM+N+ + NA GL  +   ++A D A+LG  + +++P+ Y Y  I++F+       N N
Sbjct: 173 IGMKNSYFVNAHGLSAEGHHSSAYDLAMLGRAMVRDYPETYAYNKIKEFQVGTIKQNNRN 232

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT--- 285
            LL +   +DGIKTG+T  +G+ +++S +  D  +VAVVMG  + ++R   +L L+    
Sbjct: 233 LLLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLVAVVMGDTSERQRADDSLALLNWGF 292

Query: 286 SFLEKKTL 293
            F E  +L
Sbjct: 293 RFFETHSL 300


>gi|218558891|ref|YP_002391804.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli S88]
 gi|218365660|emb|CAR03397.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli S88]
          Length = 388

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 131/238 (55%), Gaps = 8/238 (3%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT 112
           S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + V + A A 
Sbjct: 38  SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAK 97

Query: 113 QNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
            NP     S ++LKE    +       LI  S ND   A  ++I+G +++F  +M+N A+
Sbjct: 98  DNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAE 157

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +      N 
Sbjct: 158 KLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNR 217

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R+++A +L+
Sbjct: 218 NGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLL 275


>gi|167551002|ref|ZP_02344757.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|168242129|ref|ZP_02667061.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168466288|ref|ZP_02700158.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168818250|ref|ZP_02830250.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194445713|ref|YP_002041329.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194448664|ref|YP_002046110.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|207857497|ref|YP_002244148.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|194404376|gb|ACF64598.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194406968|gb|ACF67187.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|195631235|gb|EDX49795.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|205324074|gb|EDZ11913.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205338413|gb|EDZ25177.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205345154|gb|EDZ31918.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|206709300|emb|CAR33640.1| penicillin-binding protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 390

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 136/256 (53%), Gaps = 8/256 (3%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           L+   +S A +  A    + +++D    Q +T   + + R PASLTK+MT Y++   + S
Sbjct: 22  LAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDS 81

Query: 96  KKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            ++  +  + V + A A  NP     S ++LKE    +       LI  S ND   A  +
Sbjct: 82  HRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALAD 141

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
           +I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D A+L   +    P++Y
Sbjct: 142 YIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFY 201

Query: 210 KYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +S +   +      N N LL +K  +IDG+KTG+T  +GFN++ S       ++AVVM
Sbjct: 202 HMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNLIASAVDGQRRLIAVVM 261

Query: 269 GMPTSQERDQKALELI 284
           G  +S+ R+++A +L+
Sbjct: 262 GAKSSKGREEQARKLL 277


>gi|158320620|ref|YP_001513127.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii
           OhILAs]
 gi|158140819|gb|ABW19131.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii
           OhILAs]
          Length = 386

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 131/236 (55%), Gaps = 6/236 (2%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+ID N   +   K   E   PAS+TK+MT+ ++ E + S K+ LN ++ VS+ A+  
Sbjct: 37  SAILIDANTGTVLYEKNIHEKLPPASVTKIMTMLLVMEAIDSNKITLNDKVTVSERASKM 96

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             ++LYL+     T E+ +  +  RSAND S A GE I+G+E+ F   M+ +AK++GM N
Sbjct: 97  GGTQLYLEPGEVKTVEELMKGVAIRSANDASLALGEHIAGTEELFVQEMNRRAKELGMNN 156

Query: 174 TIYKNASGLHDKNQITTARDQAILG--ILLRKNFPQYYKYF---SIRKFRYRNRIITNHN 228
           T + N +GL  +  +TTA D AI+   +L  K+  ++   +    +   R   + + N N
Sbjct: 157 TTFVNTNGLPAEGHVTTAYDIAIMSRELLKHKSIHKWLTTWMDTVVVGKRQSEQSLVNTN 216

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +L+N     +GIKTGYT  +   +  S        ++V++  P+SQ R  +A +L+
Sbjct: 217 RLINSYQGANGIKTGYTTEALHCLSASATRGGTTFISVILAAPSSQVRFNEAAKLL 272


>gi|167759038|ref|ZP_02431165.1| hypothetical protein CLOSCI_01385 [Clostridium scindens ATCC 35704]
 gi|167663445|gb|EDS07575.1| hypothetical protein CLOSCI_01385 [Clostridium scindens ATCC 35704]
          Length = 435

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 128/239 (53%), Gaps = 9/239 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+++ +  Q+   K  DE R PAS+TK+MTL +IF+ L S K+ L  ++  S+ AA+ 
Sbjct: 84  SAILMEASTGQIIYEKDADEQRPPASVTKIMTLLLIFDALDSGKISLKDEVSTSEYAASM 143

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+     T +  I  +   SAND   A  E+I G+E++F   M+ +AK +GM+N
Sbjct: 144 GGSQVFLEPGETQTVDTMIKCIAVASANDACVAMAEYICGNEEEFVKQMNQRAKGLGMEN 203

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--------IT 225
           T + N +GL     +TTARD A++   L   +PQ + Y  I      +          +T
Sbjct: 204 THFVNCNGLDTDGHLTTARDIALMSRELITTYPQIHDYSMIWMENITHTTKKGTTEFGLT 263

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N NKL+ +     G+KTG T  + + +  + +     ++AV+M  P  ++R   A  L+
Sbjct: 264 NTNKLVRQYEYATGLKTGSTDKAKYCVSATAKKDGMELIAVIMAAPDHKQRFTDATTLL 322


>gi|291562424|emb|CBL41240.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
           SS3/4]
          Length = 450

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/252 (32%), Positives = 130/252 (51%), Gaps = 12/252 (4%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DEPR PAS+TK+MTL +IF+ LQS K+ L  ++  S  A +   S+++L+E    T E  
Sbjct: 109 DEPRNPASVTKIMTLILIFDALQSGKIRLTDEVVTSAHAKSMGGSQVFLEEGEIQTVETL 168

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ-ITT 190
           I  ++  S ND S A  EFI G E  F  +M+ +AK +GM++T + +  GL D  + +TT
Sbjct: 169 IKCIVIASGNDASVAMAEFIGGDEGTFVKMMNERAKGLGMEHTKFIDCCGLTDSPEHVTT 228

Query: 191 ARDQAILGILLRKNFPQYYKYFSIR--------KFRYRNRIITNHNKLLNKMHN--IDGI 240
           ARD A++   L   +PQ   Y +I         K   +   ++N NKLL    N  + G+
Sbjct: 229 ARDIALMSRELITKYPQITNYTTIWMENITHVTKQGTKEFGLSNTNKLLKMATNFEVTGL 288

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT-SFLEKKTLKHQQTH 299
           KTG T  + + +  + +     ++A +M  P  + R + A+ L+   F   +  K +   
Sbjct: 289 KTGSTSIAKYCLSATAKKDGVELIAAIMAAPDFKARFKDAVTLLNYGFGNCRLYKDETPP 348

Query: 300 RKDNLSSTSLKK 311
               LS T  K+
Sbjct: 349 ELPKLSVTGGKE 360


>gi|33152983|ref|NP_874336.1| D-alanyl-D-alanine carboxypeptidase fraction A [Haemophilus ducreyi
           35000HP]
 gi|33149208|gb|AAP96725.1| penicillin-binding protein 5 [Haemophilus ducreyi 35000HP]
          Length = 393

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 155/293 (52%), Gaps = 25/293 (8%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTG----------------FKQDEP 74
           M K LF SI ++++A    A    +S+   ++  Q+                      + 
Sbjct: 1   MKKRLFTSISLVALAFSHSAVAVDASVEFGISAPQLNAQTYVLMDYNSGAVLASLNPQQR 60

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQG 131
           ++PASLTKMMT Y++ + ++  K+  +  + VS+ A  +     S ++L   T  +    
Sbjct: 61  QHPASLTKMMTSYVVGDAIKQGKVKNSDMVTVSENAWARKFPGSSLMFLDLNTQVSVADL 120

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  LI  S ND + A  E  SGS++ F   M+   ++ G++NT +    GL +++Q ++A
Sbjct: 121 MRGLIIVSGNDAAVALAEHTSGSQQAFIDQMNKFGQQFGLKNTHFTTVHGLDEESQYSSA 180

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYR-NRIITNHNKLL-NKMHNIDGIKTGYTRNSG 249
            D AI+G  + ++ P+ YK +S ++F+Y   +   N N LL +K  N+DG+KTG+T  +G
Sbjct: 181 LDMAIIGAHVIRDQPEEYKIYSEKEFKYNIKKPQPNRNGLLWDKTMNVDGMKTGHTNQAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI----TSFLEKKTLKHQQT 298
           +N+V S    +  +++VVMG+PT + R+ ++ +L+     +F   K+L   QT
Sbjct: 241 YNLVASATNSNTRLISVVMGVPTYKGREVESKKLLQWGFANFETVKSLPAGQT 293


>gi|225174857|ref|ZP_03728854.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
           AHT 1]
 gi|225169497|gb|EEG78294.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
           AHT 1]
          Length = 389

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 116/206 (56%), Gaps = 12/206 (5%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPAS+TK+MT+ +  E L+  K+  +  +PVS+ AA    S+++L      T E  ++ +
Sbjct: 56  YPASVTKIMTMLLAMEALEEGKVKPDDLVPVSEAAAAHGGSQIFLSPGDRITFEDLMIGI 115

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
              SAND S A  EF++GS   F   M+ KA+++GM NT + N  GLHD+N  TTA D A
Sbjct: 116 GVGSANDGSWAMAEFLAGSADAFVTQMNEKARELGMNNTNFMNPHGLHDENHYTTAYDIA 175

Query: 196 ILG-ILLRKNFPQYYKYFSI---RKF------RYRNRIITNHNKLLNKMHNIDGIKTGYT 245
           ++   LLR  +P+ +++ +I    +F      +     ++N N+++      DG+KTG+T
Sbjct: 176 LMSRELLR--YPKIHEWITIWMDEEFLKGKIQKEEGVYLSNANRIVRYYDGGDGLKTGFT 233

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMP 271
             +G  +  + +  D   +AV++G P
Sbjct: 234 SEAGNCVSATAKRGDTRFMAVILGAP 259


>gi|218463771|ref|ZP_03503862.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli Kim 5]
          Length = 385

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 122/231 (52%), Gaps = 11/231 (4%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---- 110
           S+  + + KN+  GF       PASL K+MT+ ++F+ +   ++ L+T+ PVS+ A    
Sbjct: 30  STGTVLLAKNEDQGFS------PASLAKLMTMNLVFDAVTKGQITLDTEYPVSEYAWRTG 83

Query: 111 -ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            A    + ++   K+    E  I  +  + AND      E ++GSE++FA  M+ +A++I
Sbjct: 84  GAPSRTATMFAALKSRVRVEDLIKGVAIQGANDSCIILAEGMAGSEQQFAESMTRRAREI 143

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM   ++ N++GL D     TAR+   L   L++++P  Y YF++  F +      N N 
Sbjct: 144 GMDKAVFGNSTGLPDGKSKVTAREMVTLAAALQQSYPNLYPYFALPDFEWNKIFQRNRNP 203

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           LL      DG+ TG+T   G++IV S++     +   + G+ + +ER ++A
Sbjct: 204 LLGLDLGADGLATGFTEGEGYSIVASVQRDGRRLFLALAGIASDKERTEEA 254


>gi|205353205|ref|YP_002227006.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205272986|emb|CAR37933.1| penicillin-binding protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326628291|gb|EGE34634.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 390

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 136/256 (53%), Gaps = 8/256 (3%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           L+   +S A +  A    + +++D    Q +T   + + R PASLTK+MT Y++   + S
Sbjct: 22  LAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDS 81

Query: 96  KKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            ++  +  + V + A A  NP     S ++LKE    +       LI  S ND   A  +
Sbjct: 82  HRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALAD 141

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
           +I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D A+L   +    P++Y
Sbjct: 142 YIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFY 201

Query: 210 KYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +S +   +      N N LL +K  +IDG+KTG+T  +GFN++ S       ++AVVM
Sbjct: 202 HMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNLIASAVDGQRRLIAVVM 261

Query: 269 GMPTSQERDQKALELI 284
           G  +S+ R+++A +L+
Sbjct: 262 GAKSSKGREEQARKLL 277


>gi|16764014|ref|NP_459629.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|62179236|ref|YP_215653.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161615147|ref|YP_001589112.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167550827|ref|ZP_02344583.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|167990643|ref|ZP_02571743.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168231649|ref|ZP_02656707.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168236628|ref|ZP_02661686.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168240484|ref|ZP_02665416.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168264432|ref|ZP_02686405.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168465811|ref|ZP_02699693.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168823261|ref|ZP_02835261.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194442745|ref|YP_002039879.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194448720|ref|YP_002044671.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194471751|ref|ZP_03077735.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194736722|ref|YP_002113755.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197250303|ref|YP_002145612.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|198245247|ref|YP_002214626.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200389790|ref|ZP_03216401.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204930599|ref|ZP_03221529.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205351925|ref|YP_002225726.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207856103|ref|YP_002242754.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224582473|ref|YP_002636271.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238911587|ref|ZP_04655424.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|16419149|gb|AAL19588.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|62126869|gb|AAX64572.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161364511|gb|ABX68279.1| hypothetical protein SPAB_02915 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401408|gb|ACF61630.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194407024|gb|ACF67243.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194458115|gb|EDX46954.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194712224|gb|ACF91445.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195631937|gb|EDX50457.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197214006|gb|ACH51403.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197290404|gb|EDY29760.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|197939763|gb|ACH77096.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|199602235|gb|EDZ00781.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204320533|gb|EDZ05736.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205271706|emb|CAR36537.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205324158|gb|EDZ11997.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205331044|gb|EDZ17808.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205334030|gb|EDZ20794.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205339760|gb|EDZ26524.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205340474|gb|EDZ27238.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205347141|gb|EDZ33772.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206707906|emb|CAR32194.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467000|gb|ACN44830.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261245910|emb|CBG23711.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267992371|gb|ACY87256.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157238|emb|CBW16725.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911668|dbj|BAJ35642.1| D-alanyl-D-alanine carboxypeptidase DacA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320084907|emb|CBY94697.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321226217|gb|EFX51268.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322613231|gb|EFY10174.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322621299|gb|EFY18156.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322623719|gb|EFY20557.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628991|gb|EFY25770.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631713|gb|EFY28467.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637551|gb|EFY34253.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322641891|gb|EFY38521.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322646735|gb|EFY43241.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651436|gb|EFY47816.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653113|gb|EFY49447.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658833|gb|EFY55088.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664897|gb|EFY61090.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322668899|gb|EFY65051.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670595|gb|EFY66728.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675336|gb|EFY71412.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682193|gb|EFY78218.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684977|gb|EFY80974.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|322713701|gb|EFZ05272.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323128954|gb|ADX16384.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323193964|gb|EFZ79166.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323197944|gb|EFZ83066.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323202009|gb|EFZ87069.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207142|gb|EFZ92095.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323210407|gb|EFZ95298.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323214331|gb|EFZ99082.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323221482|gb|EGA05896.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323231084|gb|EGA15200.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323234084|gb|EGA18173.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238221|gb|EGA22279.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323242545|gb|EGA26569.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248478|gb|EGA32412.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323259234|gb|EGA42877.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261642|gb|EGA45217.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264824|gb|EGA48325.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323272339|gb|EGA55746.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326622381|gb|EGE28726.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326626964|gb|EGE33307.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332987582|gb|AEF06565.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 403

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 134/253 (52%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  DE R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFK 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 94  ETDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAVYK 213

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 214 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLVASATEGQMRLISAVMGGRT 273

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 274 YKGRETESKKLLT 286


>gi|254995301|ref|ZP_05277491.1| hypothetical protein AmarM_05055 [Anaplasma marginale str.
           Mississippi]
          Length = 370

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 124/234 (52%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           S A ++H K  ++ +    ++  +     D    P+S++K+MTLY++F++L +  + ++ 
Sbjct: 25  SYALKMHTKAPHAIVYELGSRTVLFEHDADVAAAPSSMSKLMTLYLVFQHLHAGLIKMDD 84

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
              VS++A  +  S  +LK          I+     S ND   A  E +SGS+++F   +
Sbjct: 85  TFSVSESAWKRGGSSAFLKVGQMVKVRDLIMGAAVSSGNDACIALAEGVSGSQEQFVEDI 144

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
           ++ AK++ + ++ + N +G  D+  + + RD   L + + ++FP+YY  F  ++F Y   
Sbjct: 145 NSLAKEMNLAHSSFTNVTGWPDEGHLMSVRDILTLSVRIFEDFPEYYHVFGEKQFTYNGV 204

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
              N+N LLN    +DGIKTG+T  +G+ I  S +  +  +  VV G+ T  ER
Sbjct: 205 TQKNYNTLLNYNIGVDGIKTGHTEKAGYGIAASAQKDNRRVFVVVNGLKTETER 258


>gi|126642471|ref|YP_001085455.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           (precursor) [Acinetobacter baumannii ATCC 17978]
          Length = 346

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 131/234 (55%), Gaps = 4/234 (1%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFT 127
           ++E   PAS+TKMMT YII + L   +L  N Q+ ++++A    + + S +Y+      T
Sbjct: 14  ENEKLAPASMTKMMTSYIIEQKLLKGELTENEQVRMNESAWCKGSSSESCMYVPLNGTAT 73

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
             + +  +I +S ND S A  E I+G+E  FA +M+ +AK+IGM NT + N++G+  +  
Sbjct: 74  VLEMLRGIIIQSGNDASKAMAEHIAGNEGTFAHMMNQEAKRIGMTNTQFINSTGMPAEGH 133

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRN 247
            +TA+D A+L   + K+  +YY  +S ++F +      N N LL    ++DG+KTG+T  
Sbjct: 134 YSTAKDMAVLAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDE 193

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQER-DQKALELITSFLEKKTLKHQQTHR 300
           +G+ + TS +     +++V+ G P+  ER DQ    L   F   +T   Q  ++
Sbjct: 194 AGYCLTTSSKRGPMRLISVIFGTPSMSERADQTRALLAWGFANFETANVQPANQ 247


>gi|291616858|ref|YP_003519600.1| DacC [Pantoea ananatis LMG 20103]
 gi|291151888|gb|ADD76472.1| DacC [Pantoea ananatis LMG 20103]
 gi|327393284|dbj|BAK10706.1| penicillin-binding protein 6 precursor DacC [Pantoea ananatis
           AJ13355]
          Length = 400

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 139/262 (53%), Gaps = 11/262 (4%)

Query: 35  LFLSIIMISMASELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIF 90
           L L   M   A +  A P+  +   I+ID    + +T    D+   PASLTKMMT Y++ 
Sbjct: 18  LLLVAPMAVFAEQAPAAPQIDAKAWILIDYASGKVLTESNADQRLDPASLTKMMTSYVVG 77

Query: 91  EYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVS 144
           + ++S K+  +  + V + A AT NP     S ++LK        +    ++ +S ND  
Sbjct: 78  QAIKSGKIKPDDMVTVGQDAWATGNPKLRGSSLMFLKPGDRIPVHELNKGIVIQSGNDAC 137

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  ++++GS+  F  LM+N  K +G++NT +    GL    Q +TARD A++G  L ++
Sbjct: 138 IALADYVAGSQDSFIGLMNNYVKALGLKNTHFMTVHGLDADGQYSTARDMALIGQALIRD 197

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
            P+ Y     ++F + N    N N+LL   +  +DGIKTG+T  +G N+V S    D  +
Sbjct: 198 VPEEYALNKEKEFTFNNIRQMNRNRLLWSSNLKVDGIKTGHTSGAGNNLVASATEGDMRL 257

Query: 264 VAVVMGMPTSQERDQKALELIT 285
           ++VV+G  +   R +++ +L+T
Sbjct: 258 ISVVLGTASDAIRFRESEKLLT 279


>gi|161502774|ref|YP_001569886.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864121|gb|ABX20744.1| hypothetical protein SARI_00825 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 390

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 136/256 (53%), Gaps = 8/256 (3%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           L+   +S A +  A    + +++D    Q +T   + + R PASLTK+MT Y++   + S
Sbjct: 22  LAADAVSFAPQPPAINAGAWVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDS 81

Query: 96  KKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            ++  +  + V + A A  NP     S ++LKE    +       LI  S ND   A  +
Sbjct: 82  HRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALAD 141

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
           +I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D A+L   +    P++Y
Sbjct: 142 YIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFY 201

Query: 210 KYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +S +   +      N N LL +K  +IDG+KTG+T  +GFN++ S       ++AVVM
Sbjct: 202 HMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNLIASAVDGQRRLIAVVM 261

Query: 269 GMPTSQERDQKALELI 284
           G  +S+ R+++A +L+
Sbjct: 262 GAESSKGREEQARKLL 277


>gi|213583748|ref|ZP_03365574.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 401

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 134/253 (52%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  DE R PASLTKMMT Y+I + +++ K  
Sbjct: 35  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFK 91

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 92  ETDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 151

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 152 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAVYK 211

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 212 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLVASATEGQMRLISAVMGGRT 271

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 272 YKGRETESKKLLT 284


>gi|161504189|ref|YP_001571301.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865536|gb|ABX22159.1| hypothetical protein SARI_02296 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 403

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 134/253 (52%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  DE R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFK 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 94  ETDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAVYK 213

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 214 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLVASATEGQMRLISAVMGGRT 273

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 274 YKGRETESKKLLT 286


>gi|170019661|ref|YP_001724615.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli ATCC 8739]
 gi|169754589|gb|ACA77288.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli ATCC
           8739]
          Length = 388

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 135/247 (54%), Gaps = 13/247 (5%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 33  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 89

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 90  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 150 EMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 209

Query: 220 RNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
                 N N LL  N M N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R+
Sbjct: 210 NGITQQNRNGLLWDNTM-NVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGRE 268

Query: 278 QKALELI 284
           ++A +L+
Sbjct: 269 EEARKLL 275


>gi|89256395|ref|YP_513757.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein)
           family protein [Francisella tularensis subsp. holarctica
           LVS]
 gi|115314839|ref|YP_763562.1| serine-type D-Ala-D-Ala carboxypeptidase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|156502486|ref|YP_001428551.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167010417|ref|ZP_02275348.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367733|ref|ZP_04983754.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein)
           [Francisella tularensis subsp. holarctica 257]
 gi|290953818|ref|ZP_06558439.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312829|ref|ZP_06803561.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89144226|emb|CAJ79499.1| D-alanyl-D-alanine carboxypeptidase (Penicillin binding protein)
           family protein [Francisella tularensis subsp. holarctica
           LVS]
 gi|115129738|gb|ABI82925.1| serine-type D-Ala-D-Ala carboxypeptidase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253544|gb|EBA52638.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein)
           [Francisella tularensis subsp. holarctica 257]
 gi|156253089|gb|ABU61595.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 444

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 125/271 (46%), Gaps = 52/271 (19%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D  R PASLTK+MT YI+   +++  L  +T IP+S+ AA+   SK+Y+K     +    
Sbjct: 74  DVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENAASTGGSKMYVKAGAKVSVRNL 133

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +   S ND + A  E+I G+ + F  LM+  AK IGM NT + N  GL    Q TTA
Sbjct: 134 VTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIGMNNTHFANPDGLPGGEQYTTA 193

Query: 192 RDQAILGILLRKNFPQYYKYF----------------------SIRKF-RYRNRII---- 224
            D A+L      NFP+ YK +                       + KF R    +I    
Sbjct: 194 HDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIADRKQCLPKFDRATGNVIESYT 253

Query: 225 -------------------------TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
                                     N N+LL      DG+KTG+T  +G+ +V+S++  
Sbjct: 254 VKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGADGMKTGHTDAAGYCLVSSVKQD 313

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            +  ++VV+G  +S +RD ++ +L+   L K
Sbjct: 314 GERFISVVLGTTSSAKRDSESAKLLRYALSK 344


>gi|16759596|ref|NP_455213.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29142631|ref|NP_805973.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56414228|ref|YP_151303.1| D-alanyl-D-alanine carboxypeptidase subunit A [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363151|ref|YP_002142788.1| D-alanyl-D-alanine carboxypeptidase subunit A [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|25297769|pir||AH0580 D-alanine carboxypeptidase [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16501888|emb|CAD05114.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138262|gb|AAO69833.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56128485|gb|AAV77991.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197094628|emb|CAR60150.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 403

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 134/253 (52%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  DE R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFK 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 94  ETDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAVYK 213

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 214 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLVASATEGQMRLISAVMGGRT 273

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 274 YKGRETESKKLLT 286


>gi|324112725|gb|EGC06701.1| D-alanyl-D-alanine carboxypeptidase [Escherichia fergusonii B253]
 gi|325496781|gb|EGC94640.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia
           fergusonii ECD227]
          Length = 403

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 126/227 (55%), Gaps = 19/227 (8%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V + A AT NP     S ++LK    
Sbjct: 62  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGRDAWATGNPALRGSSVMFLKPGDQ 121

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL   
Sbjct: 122 VSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAP 181

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLL--NKMHNID 238
            Q +TARD A+L   L  + P+ Y     K F+  K R  NR     N+LL  + +H +D
Sbjct: 182 GQFSTARDMALLSKALIHDVPEEYAIHKEKEFTFNKIRQPNR-----NRLLWSSNLH-VD 235

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           G+KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 236 GLKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLT 282


>gi|312973749|ref|ZP_07787921.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 1827-70]
 gi|310332344|gb|EFP99579.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 1827-70]
          Length = 390

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 134/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           ++HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 35  QIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 91

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 92  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 151

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ + +T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 152 EMMNNYAEKLHLNDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 211

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 212 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREE 271

Query: 279 KALELI 284
           +A +L+
Sbjct: 272 EARKLL 277


>gi|254369366|ref|ZP_04985378.1| serine-type D-Ala-D-Ala carboxypeptidase [Francisella tularensis
           subsp. holarctica FSC022]
 gi|157122316|gb|EDO66456.1| serine-type D-Ala-D-Ala carboxypeptidase [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 444

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 125/271 (46%), Gaps = 52/271 (19%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D  R PASLTK+MT YI+   +++  L  +T IP+S+ AA+   SK+Y+K     +    
Sbjct: 74  DVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENAASTGGSKMYVKAGAKVSVRNL 133

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +   S ND + A  E+I G+ + F  LM+  AK IGM NT + N  GL    Q TTA
Sbjct: 134 VTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIGMNNTHFANPDGLPGGEQYTTA 193

Query: 192 RDQAILGILLRKNFPQYYKYF----------------------SIRKF-RYRNRII---- 224
            D A+L      NFP+ YK +                       + KF R    +I    
Sbjct: 194 HDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIADRKQCLPKFDRATGNVIESYT 253

Query: 225 -------------------------TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
                                     N N+LL      DG+KTG+T  +G+ +V+S++  
Sbjct: 254 VKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGADGMKTGHTDAAGYCLVSSVKQD 313

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            +  ++VV+G  +S +RD ++ +L+   L K
Sbjct: 314 GERFISVVLGTTSSAKRDSESAKLLRYALSK 344


>gi|56417129|ref|YP_154203.1| hypothetical protein AM1091 [Anaplasma marginale str. St. Maries]
 gi|56388361|gb|AAV86948.1| hypothetical protein AM1091 [Anaplasma marginale str. St. Maries]
          Length = 380

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 124/234 (52%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           S A ++H K  ++ +    ++  +     D    P+S++K+MTLY++F++L +  + ++ 
Sbjct: 25  SYALKMHTKAPHAIVYELGSRTVLFEHDADVAAAPSSMSKLMTLYLVFQHLHAGLIKMDD 84

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
              VS++A  +  S  +LK          I+     S ND   A  E +SGS+++F   +
Sbjct: 85  TFSVSESAWKRGGSSAFLKVGQMVKVRDLIMGAAVSSGNDACIALAEGVSGSQEQFVEDI 144

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
           ++ AK++ + ++ + N +G  D+  + + RD   L + + ++FP+YY  F  ++F Y   
Sbjct: 145 NSLAKEMNLAHSSFTNVTGWPDEGHLMSVRDILTLSVRIFEDFPEYYHVFGEKQFTYNGV 204

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
              N+N LLN    +DGIKTG+T  +G+ I  S +  +  +  VV G+ T  ER
Sbjct: 205 TQKNYNTLLNYNIGVDGIKTGHTEKAGYGIAASAQKDNRRVFVVVNGLKTETER 258


>gi|253990345|ref|YP_003041701.1| penicillin-binding protein 6 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781795|emb|CAQ84958.1| penicillin-binding protein 6 (d-alanyl-d-alanine carboxypeptidas
           fraction c) (dd-pept (dd-carboxypeptidase) (pbp-6)idase)
           [Photorhabdus asymbiotica]
          Length = 400

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 122/221 (55%), Gaps = 7/221 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y+I + +++ K+     + V K A AT NP     S ++LK    
Sbjct: 59  DERLDPASLTKIMTSYVIGQAIKAGKITPEDVVTVGKDAWATGNPVLKGSSLMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
                    ++ +S ND S A  ++++GS+  F  LM+N  K +G+ NT ++   GL  +
Sbjct: 119 VKVIDLNRGIVIQSGNDASIALADYVAGSQDTFVSLMNNYVKSLGLTNTHFQTVHGLDAE 178

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGY 244
            Q +TARD A+L   + ++ P  Y     + F +      N N+LL NK  N+DG+KTGY
Sbjct: 179 GQFSTARDMAVLSQAMIRDVPDEYVLHKEKAFTFNKIQQPNRNRLLWNKSINVDGVKTGY 238

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           T  +G+N+V S       +++VV+G P+ + R  ++ +L++
Sbjct: 239 TSGAGYNLVASATEGPMRLISVVLGAPSDRVRFAESEKLLS 279


>gi|312110348|ref|YP_003988664.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y4.1MC1]
 gi|311215449|gb|ADP74053.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y4.1MC1]
          Length = 393

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 143/263 (54%), Gaps = 20/263 (7%)

Query: 34  ILFLSIIMISMASELHAKPK-------------YSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           +LF SI + +++S +HA+ K              S+I+I+ +   +   K  +E   PAS
Sbjct: 9   LLFASIFLFTISSYVHAEEKKSTARGIELASEARSAILIERDTGAVLYEKNANEKLPPAS 68

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MT+ +I E +   +L    ++  S+ AA+   S+++L+     T ++ +  +   S
Sbjct: 69  MTKIMTMLLIMEAIDKGELSYKEKVRASEYAASMGGSQIFLEPGEEMTVDELLRGIAIGS 128

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND S A  E I+GSE+ F  +M+ KAK++G++NT ++NA+GL  K   ++A D AI+  
Sbjct: 129 GNDASVALAERIAGSEEAFVEMMNKKAKELGLKNTSFQNATGLPAKGHYSSAHDMAIMAR 188

Query: 200 LLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
            L K +    KY S     +R+   +   + N N+L+     +DG+KTG+T  + + +  
Sbjct: 189 ELLK-YEDITKYTSKYEDYLRENTDKKFWLVNTNRLVKFYPGVDGLKTGFTSEAKYCLTA 247

Query: 255 SLRYKDDPIVAVVMGMPTSQERD 277
           + +     ++AVV G PT +ER+
Sbjct: 248 TAKKNGMRVIAVVFGAPTPKERN 270


>gi|308066921|ref|YP_003868526.1| D-alanyl-D-alanine carboxypeptidase precursor [Paenibacillus
           polymyxa E681]
 gi|305856200|gb|ADM67988.1| D-alanyl-D-alanine carboxypeptidase precursor [Paenibacillus
           polymyxa E681]
          Length = 462

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 131/251 (52%), Gaps = 31/251 (12%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+I+ +  Q +     DEP  PAS+TKMMT YI+ E ++  KL    ++ V++ A+  
Sbjct: 72  SAILIEPSTGQVLLSMNPDEPLPPASMTKMMTEYIVAEQVKQGKLKWTDKVTVNENASKS 131

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L +    T E+  +A+   SAND + A  E +SG+E+ F  LM+  A+++GM+N
Sbjct: 132 IGSRIFLAQGDQHTVEELYIAMAVGSANDATVALAERVSGTEQDFVKLMNETAQRMGMKN 191

Query: 174 TIYKNASGLH------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR- 220
           T + N++GL             D+  + TARD A L   + K+ P Y ++ +I+ +++R 
Sbjct: 192 TYFINSTGLDRSDMPKGFQPDTDRETVMTARDAATLASYIIKDHPDYTRFTTIQSYKFRP 251

Query: 221 ---------------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
                          N+ ITN  K       +DG+KTG+T N+G     +       +++
Sbjct: 252 TDKAPLININWMLEANKNITNFRKF--AYPGLDGMKTGHTANAGNCFTGTAERNGMRLIS 309

Query: 266 VVMGMPTSQER 276
           VVMG  +   R
Sbjct: 310 VVMGADSDAHR 320


>gi|320539093|ref|ZP_08038764.1| putative D-alanyl-D-alanine carboxypeptidase (penicillin-binding
           protein 5) [Serratia symbiotica str. Tucson]
 gi|320030731|gb|EFW12739.1| putative D-alanyl-D-alanine carboxypeptidase (penicillin-binding
           protein 5) [Serratia symbiotica str. Tucson]
          Length = 403

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 146/279 (52%), Gaps = 22/279 (7%)

Query: 29  QLMGKILFLSIIMISMASELHAK-----------PKYSS---IVIDVNKNQMTG-FKQDE 73
           +L+ +I   ++I +S A+  HA            P+  +   I+ID N  ++      D 
Sbjct: 8   RLIKRIALSTVITMSAATVAHADEVNIKTMIPGVPQIDAAAYILIDYNSGKVLAEMNADA 67

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFT 127
            R PASLTKMMT Y+I   L++ K+     + V + A AT NP     S ++L+     +
Sbjct: 68  RRDPASLTKMMTSYVIGHTLKAGKIGQEDLVTVGQDAWATGNPVFKGSSLMFLRPGDRVS 127

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
             +    +  +S ND   A  ++++GS+  F  LM+    K+G+QNT ++   GL  + Q
Sbjct: 128 VAKLSRGINLQSGNDACVAMADYVAGSQDAFVNLMNTYVNKLGLQNTHFQTVHGLDAQGQ 187

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTR 246
            ++ARD A++G  L ++ P  Y  +  ++F + N    N N LL +   N+DGIKTG+T 
Sbjct: 188 YSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTD 247

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            +G+N+V S       +++ V+G  T + R+ ++ +L+T
Sbjct: 248 AAGYNLVASATAGQMRLISAVLGGRTYKGRETESKKLLT 286


>gi|153953878|ref|YP_001394643.1| DacA2 [Clostridium kluyveri DSM 555]
 gi|219854493|ref|YP_002471615.1| hypothetical protein CKR_1150 [Clostridium kluyveri NBRC 12016]
 gi|146346759|gb|EDK33295.1| DacA2 [Clostridium kluyveri DSM 555]
 gi|219568217|dbj|BAH06201.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 403

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/245 (33%), Positives = 130/245 (53%), Gaps = 16/245 (6%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           I+  S L  +P    I+ + N N        E   PAS+TK+M + +  E L S K+ L+
Sbjct: 50  INAKSALLMEPTSGKIIFEKNAN--------EKLEPASVTKIMDMLLTMEALDSGKISLS 101

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
            ++ VS+ A     S + L      + E  I  +   S ND + A  E++ G+E+ F  L
Sbjct: 102 DKVTVSENAKKMGGSSMLLDTGEVRSVEDLIKGIGIASGNDAAVAMAEYLGGTEEAFVQL 161

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRK 216
           M+ +AK++GM NT +KN +GL  +   TTA D A++   L K+ P   KY      +I +
Sbjct: 162 MNKRAKELGMNNTQFKNCTGLSQEGHYTTAYDIALMSSELLKH-PNILKYTGTYMETISE 220

Query: 217 FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI-VTSLRYKDDPIVAVVMGMPTSQE 275
            R     + NHNKL+      DG+KTG+T ++ + I  TS+R     ++AVVMG PT +E
Sbjct: 221 GRKSPIELVNHNKLVRFFKGCDGLKTGFTDSAKYCISATSVR-DGARMLAVVMGSPTYKE 279

Query: 276 RDQKA 280
           R+++A
Sbjct: 280 RNKEA 284


>gi|269138268|ref|YP_003294968.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda EIB202]
 gi|267983928|gb|ACY83757.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda EIB202]
 gi|304558304|gb|ADM40968.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda FL6-60]
          Length = 387

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 130/239 (54%), Gaps = 9/239 (3%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT 112
           S +++D    Q +     D  R PASLTK+MT Y++ + L   ++ LN ++ +   A AT
Sbjct: 35  SWVLMDAQTGQILAAGNPDARRNPASLTKLMTNYVVEQALDQGRIGLNDRVSIGDDAWAT 94

Query: 113 QNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
           +NP     S ++LK     T    I  +I  S ND   A  +++SG +  F   M+    
Sbjct: 95  RNPLFKGSSLMFLKPGDRATVSDLIRGIIIDSGNDACVALSDYVSGDQADFVRQMNADVS 154

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
            + +QNT ++   GL    Q ++ARD A+L   +  +   YY +++ +   +      N 
Sbjct: 155 ALHLQNTHFETVHGLDAPGQYSSARDLALLARAIITHEQPYYHFYAEKSLSWNGVTQNNR 214

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIV-TSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N LL ++  ++DG+KTG+T ++GFN+V TS+  +   ++AVVMG  +S+ R+Q+A +L+
Sbjct: 215 NGLLWDQDLHVDGMKTGHTASAGFNLVATSVDARGQRLIAVVMGADSSRGREQQAKKLL 273


>gi|114799690|ref|YP_760518.1| D-alanyl-D-alanine carboxypeptidase [Hyphomonas neptunium ATCC
           15444]
 gi|114739864|gb|ABI77989.1| D-alanyl-D-alanine carboxypeptidase [Hyphomonas neptunium ATCC
           15444]
          Length = 378

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 116/220 (52%), Gaps = 6/220 (2%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN--PSK---LYLKEKT 124
           + DEP  PAS+TKMMT +++FE +   +L L  +  VS+ A  +   PS    + L  K 
Sbjct: 43  RGDEPMTPASMTKMMTAFVVFELIDRGELSLTDKFTVSEDAWRRGGFPSGTSTMGLVPKD 102

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
             T E+ +  +IT S ND      + ISGSE+ F+  M+  A ++G+ +  + N +GL  
Sbjct: 103 TPTVEELLHGVITMSGNDACIVLAQGISGSEEAFSRRMTEMAHELGLSSVNFVNTTGLEG 162

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGY 244
              + +A D A L  +    +PQYY+++S+  + +R     N N LL ++   DG+KTG+
Sbjct: 163 DGHVVSAEDLARLAKMTIDKYPQYYEWYSLPSYTWREYTQANRNPLL-EVAGADGLKTGH 221

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
             +SG+ +  S          VV G+PT   R Q++  L+
Sbjct: 222 LESSGYGLTASAVRDGVRRTIVVNGLPTMAARAQESERLM 261


>gi|251780585|ref|ZP_04823505.1| penicillin-binding protein DacF [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243084900|gb|EES50790.1| penicillin-binding protein DacF [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 396

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 142/283 (50%), Gaps = 33/283 (11%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   PAS+TK+MT+ +  E + + K+ L+ ++  S+ A     S + L      + E+ 
Sbjct: 65  DEKFAPASVTKIMTMLLTMEAVDNGKIKLDDKVTCSENAKKMGGSTMLLDTGEIRSVEEL 124

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +   S ND + A  E++ G+E  F  LM+ +A+++GM+NT++KN +GL     ++TA
Sbjct: 125 LKGVAIASGNDAAVALAEYLGGTESDFVGLMNKRAQELGMKNTVFKNCNGLPADGHLSTA 184

Query: 192 RDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           RD +++ I L K+ P   KY      SI + R     + NHNKL+      DG+KTG+T 
Sbjct: 185 RDISLMSIELLKH-PTILKYTGTYMDSISEGRKSPIELVNHNKLVRFFEGCDGLKTGFTN 243

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK--------------KT 292
            + + I  +       ++ V+MG PT + R++ A  L+     K              K 
Sbjct: 244 EAKYCISATATRNGVRMLTVIMGAPTYKIRNRDAGILLNHGFSKYEGKKIVSKDEDVEKV 303

Query: 293 LKHQQTHR------KDNL-------SSTSLKKSLMIKKLKRTY 322
           L  +QT R      KD+L       S+  + K ++I++LK  Y
Sbjct: 304 LMDKQTDRFFMAKAKDDLTAILPKGSNGEISKKIVIEELKPEY 346


>gi|299769239|ref|YP_003731265.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           [Acinetobacter sp. DR1]
 gi|298699327|gb|ADI89892.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           [Acinetobacter sp. DR1]
          Length = 382

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/248 (31%), Positives = 139/248 (56%), Gaps = 7/248 (2%)

Query: 45  ASELHAKPKY---SSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           A+ L A P+    S +++D    Q+   K ++E   PAS+TKMMT YII + L   +L  
Sbjct: 20  ATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMTKMMTSYIIEQKLLKGELTE 79

Query: 101 NTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           N Q+ ++++A    + + S +Y+      T  + +  +I +S ND S A  E I+G+E  
Sbjct: 80  NEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAGNEGT 139

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           FA +M+ +AK+IGM NT + N++GL  +   +TA+D A+L   + K+  +YY  +S ++F
Sbjct: 140 FAHMMNQEAKRIGMTNTQFINSTGLPAEGHYSTAKDMAVLAQHIIKDSSRYYPIYSEKEF 199

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
            +      N N LL    ++DG+KTG+T  +G+ + TS +     +++V+ G  +  ER 
Sbjct: 200 TFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLISVIFGTDSVNERA 259

Query: 278 QKALELIT 285
            +   L++
Sbjct: 260 NQTRTLLS 267


>gi|85058899|ref|YP_454601.1| D-alanyl-D-alanine carboxypeptidase [Sodalis glossinidius str.
           'morsitans']
 gi|84779419|dbj|BAE74196.1| D-alanyl-D-alanine carboxypeptidase [Sodalis glossinidius str.
           'morsitans']
          Length = 396

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/216 (33%), Positives = 121/216 (56%), Gaps = 7/216 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQ 130
           PASLTK+M+ Y+I + +++ K+H   ++ + K A AT NP     S ++LK     T + 
Sbjct: 64  PASLTKIMSSYVIGQAMKAGKIHPTDKVTIGKDAWATGNPVLRGSSLMFLKPGEQVTVDD 123

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               ++ +S ND S A  + ++GS+  F  L++  A+ +G++NT +    GL  + Q +T
Sbjct: 124 LNKGIVIQSGNDASIALADHVAGSQDAFVSLINQYAQALGLKNTHFLTVHGLDAEGQYST 183

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSG 249
           ARD AIL   L +N P  Y     ++F Y      N N+LL   +  +DG+KTGYT  +G
Sbjct: 184 ARDMAILSQALIRNVPDEYALHKEKEFTYNKIKQPNRNRLLWSGNLTVDGVKTGYTSGAG 243

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N+V S       +++VV+G PT   R +++ +L+T
Sbjct: 244 HNLVASATDNGMRLISVVLGAPTDGIRFRESEKLLT 279


>gi|183598299|ref|ZP_02959792.1| hypothetical protein PROSTU_01686 [Providencia stuartii ATCC 25827]
 gi|188020471|gb|EDU58511.1| hypothetical protein PROSTU_01686 [Providencia stuartii ATCC 25827]
          Length = 401

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/245 (34%), Positives = 134/245 (54%), Gaps = 25/245 (10%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTKMMT Y++ + +++ K+     + V   A AT NP     S ++LK K  
Sbjct: 60  DERLDPASLTKMMTSYVVGQAIKAGKITPQDMVTVGVDAWATGNPVLKGSSLMFLKPKDR 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       ++ +S ND S A  ++++GS+  F  LM+   K++G++NT +K   GL  +
Sbjct: 120 VSVLDLNKGVVIQSGNDASIALADYVAGSQDSFVSLMNEYVKQLGLKNTHFKTVHGLDSE 179

Query: 186 NQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
            Q +TARD AIL   + ++ P  Y     K F+  K R  NR     N+LL   + N+DG
Sbjct: 180 GQYSTARDMAILAQAMIRDVPDEYALHKEKEFTFNKIRQPNR-----NRLLWSQNLNVDG 234

Query: 240 IKTGYTRNSGFNIVTSLRYKDDP--IVAVVMGMPTSQERDQKALELIT---SFLEKKT-L 293
           +KTG+T  +G N+V S    D P  +++VV+G P+ + R  ++ +L+T    F E  T +
Sbjct: 235 VKTGHTSGAGHNLVASA--TDGPMRLISVVLGAPSDRVRFSESEKLLTWGFRFFETVTPI 292

Query: 294 KHQQT 298
           K  QT
Sbjct: 293 KADQT 297


>gi|188588716|ref|YP_001921477.1| penicillin-binding protein DacF [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498997|gb|ACD52133.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum E3
           str. Alaska E43]
          Length = 396

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 142/283 (50%), Gaps = 33/283 (11%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   PAS+TK+MT+ +  E + + K+ L+ ++  S+ A     S + L      + E+ 
Sbjct: 65  DEKFAPASVTKIMTMLLTMEAVDNGKIKLDDKVTCSENAKKMGGSTMLLDTGEIRSVEEL 124

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +   S ND + A  E++ G+E  F  LM+ +A+++GM+NT++KN +GL     ++TA
Sbjct: 125 LKGVAIASGNDAAVALAEYLGGTESDFVGLMNKRAQELGMKNTVFKNCNGLPADGHLSTA 184

Query: 192 RDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           RD +++ I L K+ P   KY      SI + R     + NHNKL+      DG+KTG+T 
Sbjct: 185 RDISLMSIELLKH-PTILKYTGTYMDSISEGRKSPIELVNHNKLVRFFEGCDGLKTGFTN 243

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK--------------KT 292
            + + I  +       ++ V+MG PT + R++ A  L+     K              K 
Sbjct: 244 EAKYCISATATRNGVRMLTVIMGAPTYKIRNRDAGILLNHGFSKYEGKKIVSKDEDVEKV 303

Query: 293 LKHQQTHR------KDNL-------SSTSLKKSLMIKKLKRTY 322
           L  +QT R      KD+L       S+  + K ++I++LK  Y
Sbjct: 304 LMDKQTDRFFMAKAKDDLTAILPKGSNGEISKKIVIEELKPEY 346


>gi|293606885|ref|ZP_06689233.1| D-alanyl-D-alanine carboxypeptidase DacA [Achromobacter piechaudii
           ATCC 43553]
 gi|292814737|gb|EFF73870.1| D-alanyl-D-alanine carboxypeptidase DacA [Achromobacter piechaudii
           ATCC 43553]
          Length = 386

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 145/268 (54%), Gaps = 13/268 (4%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRY-PASLTKMM 84
           +L   +L  +  + S  ++   +P+ S+   +++D    Q+        R  PASLTK+M
Sbjct: 5   KLAASLLVATACLSSAMAQSMPQPELSAKAWLLLDETSGQVIASHAATTRIEPASLTKIM 64

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNP---SKLYLKEKTYFTTEQGILALITRSAN 141
           T Y++F+ L  K+L  N  + +S T A + P   SK++L+  +  T +  +  L+ +S N
Sbjct: 65  TAYVVFDALSKKELSANQTVVIS-TRAWKVPAGSSKMFLEPGSKVTVDDLLRGLMIQSGN 123

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D + A  E +SGS + F   M++ A ++G+  T + +  GL D    +TA D ++L    
Sbjct: 124 DAAIALAEAVSGSVEAFVARMNDTAARLGLHATHFASPHGLPDPGTYSTASDLSVLATRF 183

Query: 202 RKNFPQYYK-YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
            +++PQ YK Y S ++F +      N N+LL    ++DG+KTG+T ++G+ IV + R  +
Sbjct: 184 IRDYPQLYKTYDSAKQFTFNKITQPNRNRLLWLDPSVDGLKTGHTDSAGYCIVATARRPN 243

Query: 261 DP----IVAVVMGMPTSQERDQKALELI 284
                 ++ VV+G  + + R Q++ +L+
Sbjct: 244 GSDQRRLITVVVGTASDKLRTQESRQLL 271


>gi|213425100|ref|ZP_03357850.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|289823664|ref|ZP_06543276.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
          Length = 427

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 134/253 (52%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  DE R PASLTKMMT Y+I + +++ K  
Sbjct: 61  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFK 117

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 118 ETDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 177

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 178 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAVYK 237

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 238 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLVASATEGQMRLISAVMGGRT 297

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 298 YKGRETESKKLLT 310


>gi|328676052|gb|AEB28727.1| D-alanyl-D-alanine carboxypeptidase [Francisella cf. novicida 3523]
          Length = 444

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 125/271 (46%), Gaps = 52/271 (19%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D  R PASLTK+MT YI+   +++  L  +T IP+S+ AA+   SK+Y+K     + +  
Sbjct: 74  DVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENAASTGGSKMYVKAGAKVSVKNL 133

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +   S ND + A  E+I G+ + F  LM+  AK IGM NT + N  GL    Q TTA
Sbjct: 134 VTGMDVVSGNDATIALAEYIGGTTEAFTDLMNQTAKAIGMNNTHFANPDGLPGGEQYTTA 193

Query: 192 RDQAILGILLRKNFPQYYKYF----------------------SIRKF-RYRNRII---- 224
            D A+L      NFP+ YK +                       + KF R    +I    
Sbjct: 194 HDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIADRKQCLPKFDRATGNVIESYT 253

Query: 225 -------------------------TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
                                     N N+LL      DG+KTG+T  +G+ +V+S +  
Sbjct: 254 TKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGADGMKTGHTDAAGYCLVSSAKQD 313

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            +  ++VV+G  +S +RD ++ +L+   L K
Sbjct: 314 GERFISVVLGTTSSAKRDSESAKLLRYALSK 344


>gi|13470655|ref|NP_102224.1| penicillin binding protein [Mesorhizobium loti MAFF303099]
 gi|14021397|dbj|BAB48010.1| penicillin binding protein [Mesorhizobium loti MAFF303099]
          Length = 388

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 119/218 (54%), Gaps = 5/218 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYF 126
           D+P  PAS+ K+MT+ ++F  ++S +L L+    VS+ A     A    S ++ K K+  
Sbjct: 54  DKPIPPASMAKLMTMEVVFNAIKSGRLKLDDTFVVSENAWRKGGAPSGTSTMFAKLKSAI 113

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
             E  I  +  ++AND      E ++GSE  FA  M+ +A++IG++ + + N++GL    
Sbjct: 114 RLEDLIQGVTVQAANDGCIVIAEGMAGSEDNFAAQMTERARQIGLKTSTFVNSTGLPADG 173

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           Q TT R+ A L + L +++P +Y+Y+ ++ F +      N N LL      DG+  G + 
Sbjct: 174 QQTTVRELAQLALHLWRDYPDFYRYYGLKDFTWNKISQKNRNPLLAMDIGADGLAVGASE 233

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +GF IV S+ +    ++  + G+   +ER ++A +L+
Sbjct: 234 VAGFGIVASVSHNGTRVIMAMNGLANDKERAEEARKLL 271


>gi|213646564|ref|ZP_03376617.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
          Length = 427

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/239 (33%), Positives = 128/239 (53%), Gaps = 8/239 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT 112
           S I+ID N  ++   +  DE R PASLTKMMT Y+I + +++ K      + V   A AT
Sbjct: 72  SYILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDAWAT 131

Query: 113 QNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
            NP     S ++LK        Q I  +  +S ND   A  +F +GS+  F  LM++   
Sbjct: 132 GNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVN 191

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
            +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  +  ++F +      N 
Sbjct: 192 ALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAVYKEKEFTFNGIRQLNR 251

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T
Sbjct: 252 NGLLWDNSLNVDGIKTGHTSKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLT 310


>gi|58583579|ref|YP_202595.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84625391|ref|YP_452763.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188575165|ref|YP_001912094.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58428173|gb|AAW77210.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84369331|dbj|BAE70489.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188519617|gb|ACD57562.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 401

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 127/225 (56%), Gaps = 8/225 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL--- 133
           PAS+TK+MT Y++   +++ K+  + Q+ +S+ A  +  +        +   +   L   
Sbjct: 74  PASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWREGGAGTDGSYSGFPVNQTARLEDM 133

Query: 134 --ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
              +  +S ND + A  E ++GSE+ FA LM+  A KIGM+++ + NA GL  +   ++A
Sbjct: 134 EKGMAIQSGNDAAIALAEHVAGSEEAFASLMNTYAAKIGMKDSYFVNAHGLSAEGHHSSA 193

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            D A+LG  + +++P  Y Y  I++F+  +   +N N+LL +   +DGIKTG+T  +G+ 
Sbjct: 194 YDLAMLGRAMVRDYPDTYAYNKIKEFQVGSIKQSNRNRLLWRDPAVDGIKTGHTSEAGYC 253

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTL 293
           +++S +  D  ++AVVMG  + ++R   +L L+     F E  +L
Sbjct: 254 LLSSAKRDDQRLIAVVMGDSSEEQRATDSLALLNWGFRFFETHSL 298


>gi|154253549|ref|YP_001414373.1| Serine-type D-Ala-D-Ala carboxypeptidase [Parvibaculum
           lavamentivorans DS-1]
 gi|154157499|gb|ABS64716.1| Serine-type D-Ala-D-Ala carboxypeptidase [Parvibaculum
           lavamentivorans DS-1]
          Length = 384

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 118/224 (52%), Gaps = 5/224 (2%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYL 120
           + G   DE  +PAS++K+MTL ++F  ++   + L+ +  VS+ A     A    S ++ 
Sbjct: 46  LWGKNADEQMHPASMSKLMTLDMLFGAIRDGSVSLDDEFKVSENAWRKGGAASGSSTMFA 105

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
              T       +  +I +S ND   A  E +SGSE  FA  ++ + K IG+ N+ + N++
Sbjct: 106 DLNTVVPVHAILRGIIVQSGNDACIATAEALSGSESAFAEALTERGKAIGLTNSNFTNST 165

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI 240
           G  D++ + TA D A+L   +   FP++Y  F    F +      N N  L    ++DG+
Sbjct: 166 GWPDEDHLMTAHDLAVLARHIIMEFPEFYPIFKETDFTWNGIKQGNRNPALYLDPSVDGL 225

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           KTG+T  SG+ +V S +  D  ++ V+ G+P+ + R  +++ L+
Sbjct: 226 KTGHTEASGYGLVASAKRGDQRLILVLNGLPSERARADESVRLL 269


>gi|292487778|ref|YP_003530653.1| D-alanyl-D-alanine carboxypeptidase [Erwinia amylovora CFBP1430]
 gi|292899010|ref|YP_003538379.1| penicillin-binding protein 6 [Erwinia amylovora ATCC 49946]
 gi|291198858|emb|CBJ45968.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase)
           [Erwinia amylovora ATCC 49946]
 gi|291553200|emb|CBA20245.1| D-alanyl-D-alanine carboxypeptidase [Erwinia amylovora CFBP1430]
          Length = 402

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 138/253 (54%), Gaps = 21/253 (8%)

Query: 45  ASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A +L AK   + I++D N ++ +  +  D    PASLTKMM+ Y+I + L++ K+  +  
Sbjct: 36  APQLDAK---AWILMDYNSSKVLAEYNADLRLDPASLTKMMSSYVIGQALKAGKISKDDV 92

Query: 104 IPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           + V K A AT NP     S ++LK        +    ++ +S ND S A  ++++GS+  
Sbjct: 93  VTVGKDAWATGNPVLKGSSLMFLKPGDRIAVSELNKGIVIQSGNDASIALADYVAGSQDA 152

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-----KYF 212
           F  LM++  + +G++NT +K   GL    Q +TARD A++G  L ++ P  Y     K F
Sbjct: 153 FVGLMNHYVQALGLKNTHFKTVHGLDANGQYSTARDMALIGQALIRDVPDEYALHKDKAF 212

Query: 213 SIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           +  K R  NR     N+LL   +  +DGIKTG+T  +G N+V S    D  I++VV+G  
Sbjct: 213 TFNKIRQHNR-----NRLLWSTNLQVDGIKTGHTSGAGNNLVASAVDGDRRIISVVLGAA 267

Query: 272 TSQERDQKALELI 284
           T   R +++ +L+
Sbjct: 268 TDAVRFRESEKLL 280


>gi|222475494|ref|YP_002563911.1| Serine-type D-Ala-D-Ala carboxypeptidase (dacA) [Anaplasma
           marginale str. Florida]
 gi|222419632|gb|ACM49655.1| Serine-type D-Ala-D-Ala carboxypeptidase (dacA) [Anaplasma
           marginale str. Florida]
          Length = 380

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 124/234 (52%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           S A ++H K  ++ +    ++  +     D    P+S++K+MTLY++F++L +  + ++ 
Sbjct: 25  SYALKMHTKAPHAIVYELGSRTVLFEHDADVAVAPSSMSKLMTLYLVFQHLHAGLIKMDD 84

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
              VS++A  +  S  +LK          I+     S ND   A  E +SGS+++F   +
Sbjct: 85  TFSVSESAWKRGGSSAFLKVGQMVKVRDLIMGAAVSSGNDACIALAEGVSGSQEQFVEDI 144

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
           ++ AK++ + ++ + N +G  D+  + + RD   L + + ++FP+YY  F  ++F Y   
Sbjct: 145 NSLAKEMNLAHSSFTNVTGWPDEGHLMSVRDILTLSVRIFEDFPEYYHVFGEKQFTYNGV 204

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
              N+N LLN    +DGIKTG+T  +G+ I  S +  +  +  VV G+ T  ER
Sbjct: 205 TQKNYNTLLNYNIGVDGIKTGHTEKAGYGIAASAQKDNRRVFVVVNGLKTETER 258


>gi|325920074|ref|ZP_08182046.1| penicillin-binding protein 6 [Xanthomonas gardneri ATCC 19865]
 gi|325549444|gb|EGD20326.1| penicillin-binding protein 6 [Xanthomonas gardneri ATCC 19865]
          Length = 401

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 126/225 (56%), Gaps = 8/225 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL--- 133
           PAS+TK+MT Y++   +++ K+  + Q+ +S+ A  +  +        +   +   L   
Sbjct: 74  PASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWREGGAGTDGSYSGFPVNQTARLEDM 133

Query: 134 --ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
              +  +S ND + A  E ++GSE+ FA LM++ A KIGM+++ + NA GL  +   +TA
Sbjct: 134 EKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKIGMKDSYFVNAHGLSAEGHHSTA 193

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            D A+LG  + +++P+ Y Y  I++F+       N N LL +   +DGIKTG+T  +G+ 
Sbjct: 194 YDLAMLGRAMVRDYPETYAYNKIKEFQVGTIKQNNRNLLLWRDPAVDGIKTGHTSEAGYC 253

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTL 293
           +++S +  D  +VAVVMG  + ++R   +L L+     F E  +L
Sbjct: 254 LLSSAKRGDQRLVAVVMGDSSERQRADDSLALLNWGFRFFETHSL 298


>gi|317491387|ref|ZP_07949823.1| D-alanyl-D-alanine carboxypeptidase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920934|gb|EFV42257.1| D-alanyl-D-alanine carboxypeptidase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 402

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 145/273 (53%), Gaps = 15/273 (5%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLT 81
           + I L   +  ++I M        A P+ ++   +++D +  + +T    DE   PASLT
Sbjct: 11  KKITLGAGLTLMAIPMTYADEAAPAAPQINAKAYVLMDYDSGKILTEANADERLDPASLT 70

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILAL 135
           K+M  Y+I + +++ K+  N  + V K A AT NP     S ++LK        +    +
Sbjct: 71  KIMASYVIGQSIKAGKITPNDMVVVGKDAWATGNPILRGSSLMFLKPGDRVPVSELNKGV 130

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + +S ND S A  ++++GS+  F  LM+   +  G++NT +K   GL  + Q ++ARD A
Sbjct: 131 VIQSGNDASIALADYVAGSQDAFVSLMNKYVEAWGLKNTSFKTVHGLDSEGQYSSARDMA 190

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVT 254
           ++   L  + P  Y     ++F +      N N+LL +   N+DGIKTGYT  +G N+V+
Sbjct: 191 LISQRLIADVPDEYALHKEKEFTFNKIRQVNRNRLLWDSSLNVDGIKTGYTSGAGHNLVS 250

Query: 255 SLRYKDDP--IVAVVMGMPTSQERDQKALELIT 285
           S    D P  +++VV+G PT + R +++ +L+T
Sbjct: 251 S--ATDGPMRLISVVLGAPTDRIRFEESKKLLT 281


>gi|312171895|emb|CBX80152.1| D-alanyl-D-alanine carboxypeptidase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 402

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 138/253 (54%), Gaps = 21/253 (8%)

Query: 45  ASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A +L AK   + I++D N ++ +  +  D    PASLTKMM+ Y+I + L++ K+  +  
Sbjct: 36  APQLDAK---AWILMDYNSSKVLAEYNADLRLDPASLTKMMSSYVIGQALKAGKISKDDV 92

Query: 104 IPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           + V K A AT NP     S ++LK        +    ++ +S ND S A  ++++GS+  
Sbjct: 93  VTVGKDAWATGNPVLKGSSLMFLKPGDRIAVSELNKGIVIQSGNDASIALADYVAGSQDA 152

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-----KYF 212
           F  LM++  + +G++NT +K   GL    Q +TARD A++G  L ++ P  Y     K F
Sbjct: 153 FVGLMNHYVQALGLKNTHFKTVHGLDANGQYSTARDMALIGQALIRDVPDEYALHKDKAF 212

Query: 213 SIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           +  K R  NR     N+LL   +  +DGIKTG+T  +G N+V S    D  I++VV+G  
Sbjct: 213 TFNKIRQHNR-----NRLLWSTNLQVDGIKTGHTSGAGNNLVASAVDGDRRIISVVLGAA 267

Query: 272 TSQERDQKALELI 284
           T   R +++ +L+
Sbjct: 268 TDAVRFRESEKLL 280


>gi|283832568|ref|ZP_06352309.1| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC
           29220]
 gi|291072237|gb|EFE10346.1| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC
           29220]
          Length = 390

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 127/236 (53%), Gaps = 8/236 (3%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           +++D    Q +T   + + R PASLTK+MT Y++   + SK++     + V + A A  N
Sbjct: 42  VLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSKRISPTDIVTVGRDAWAKDN 101

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S ++LK+    +       LI  S ND   A  ++I+G + +F  +M+N A+K+
Sbjct: 102 PVFVGSSLMFLKQGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNNYAQKL 161

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
            +Q+T ++   GL    Q ++A D A+L   +    P +Y  +S +   +      N N 
Sbjct: 162 NLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPDFYHMYSEKSLTWNGITQQNRNG 221

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R+ +A +L+
Sbjct: 222 LLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAESAKGREDQARKLL 277


>gi|157161502|ref|YP_001458820.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli HS]
 gi|157067182|gb|ABV06437.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli HS]
          Length = 388

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 132/238 (55%), Gaps = 8/238 (3%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT 112
           S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + V + A A 
Sbjct: 38  SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAK 97

Query: 113 QNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
            NP     S ++LKE    +       LI  S ND   A  ++I+G +++F  +M+N A+
Sbjct: 98  DNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAE 157

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +      N 
Sbjct: 158 KLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNR 217

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N LL +K  N+DG+KTG+T ++GFN++ S       ++AV+MG  +++ R+++A +L+
Sbjct: 218 NGLLWDKTMNVDGLKTGHTSSAGFNLIASAVDGQRRLIAVIMGADSAKGREEEARKLL 275


>gi|326794762|ref|YP_004312582.1| beta-lactamase [Marinomonas mediterranea MMB-1]
 gi|326545526|gb|ADZ90746.1| Beta-lactamase [Marinomonas mediterranea MMB-1]
          Length = 382

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 118/208 (56%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT YI    +    +  + Q+ VS+ A     S+++++E T    E  +  +I
Sbjct: 59  PASLTKLMTAYIADYEIARGNISYDDQVRVSEAAWRMKGSRMFIREGTRVKLEDLMRGII 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E I+G+E  F  LM+  A+ +GM+NT ++N++G   +N  ++A D A+
Sbjct: 119 IQSGNDASVAVAEHIAGAEGAFVDLMNQHAQLLGMKNTHFQNSTGFPAENHYSSAYDIAL 178

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L       FP+ YK ++ + F Y +    N NKLL +   +DG+KTG+T+ +G+ +  S 
Sbjct: 179 LSRAKILQFPESYKMYAEKYFTYNDIRQPNRNKLLWRDKTVDGLKTGHTQAAGYCLAASA 238

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELI 284
                 +++VVMG  + + R  ++ +L+
Sbjct: 239 VRNGTRLISVVMGTSSDEARATESQKLM 266


>gi|190891838|ref|YP_001978380.1| D-alanyl-D-alanine carboxypeptidase [Rhizobium etli CIAT 652]
 gi|190697117|gb|ACE91202.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CIAT
           652]
          Length = 360

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 118/216 (54%), Gaps = 7/216 (3%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTY 125
           +DE   PASL K+MT+ ++FE +   ++ L+T+ PVS+ A     A    + ++   K+ 
Sbjct: 15  EDEGFSPASLAKLMTMDLVFEAVTKGQITLDTEYPVSEYAWRTGGAPSRTATMFAALKSR 74

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
              E  I  +  + AND      E ++GSE++FA  M+ +A++IGM+  ++ N++GL   
Sbjct: 75  VRVEDLIKGIAIQGANDSCIILAEGMAGSEQQFAESMTRRAREIGMEKAVFGNSTGLPGG 134

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT-NHNKLLNKMHNIDGIKTGY 244
               TAR+   L   L++++P  Y YF+   F + NRI   N N LL      DG+ TG+
Sbjct: 135 KSKVTAREMVTLAAALQQSYPNLYPYFAQPDFEW-NRIFQRNRNPLLGLDLGADGLATGF 193

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           T   G++IV S++     +   + G+ + +ER ++A
Sbjct: 194 TEGEGYSIVASVQRDGRRLFLALAGIASDKERTEEA 229


>gi|82777459|ref|YP_403808.1| D-alanyl-D-alanine carboxypeptidase [Shigella dysenteriae Sd197]
 gi|81241607|gb|ABB62317.1| penicillin binding protein 6b [Shigella dysenteriae Sd197]
          Length = 378

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 134/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 23  EIHAG---SWVLMDYTTGQILTSGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 79

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 80  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 139

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N  +K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 140 EMMNNYVEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 199

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  NIDG+KTG+T  +GFN++ S       ++AVVMG  +++ R++
Sbjct: 200 NGITQQNRNGLLWDKTMNIDGLKTGHTSGAGFNLMASAVDGQRRLIAVVMGADSAKGREE 259

Query: 279 KALELI 284
           +A +L+
Sbjct: 260 EARKLL 265


>gi|326424426|ref|NP_763548.2| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus CMCP6]
 gi|319999816|gb|AAO08538.2| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus CMCP6]
          Length = 391

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 119/213 (55%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + +    +  + Q+ +S+ A  +N    SK++++  T  + E    
Sbjct: 64  PASLTKLMTAYVAGQEMNRGNIRFSDQVVISRNAWAKNFPDSSKMFIEVGTSVSLEDLYR 123

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GS+  F  LM++ A K+G+QN+ + N  GL      +T RD
Sbjct: 124 GLIIQSGNDASVAIAEHVAGSQDAFVSLMNSWADKLGLQNSAFTNPHGLDSTGLYSTPRD 183

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A LG  + ++ P  Y  +S   F Y      N N LL ++   +DG+KTG+T  +G+++
Sbjct: 184 IAKLGQAIIRDLPSVYPMYSETSFTYNGITQYNRNGLLRDRSIAVDGMKTGFTSGAGYSL 243

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            TS    +  +++VVMG  ++  R+ ++ +L++
Sbjct: 244 ATSATSGNMRLISVVMGSNSTSSREAESKQLLS 276


>gi|262395893|ref|YP_003287746.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25]
 gi|262339487|gb|ACY53281.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25]
          Length = 389

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 117/213 (54%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + + +  + L+ ++ +S+ A  +N    SK++++  T  +      
Sbjct: 62  PASLTKLMTAYVAGQEINAGNITLDDEVVISRNAWAKNFPDSSKMFIEVNTSVSLSDLYR 121

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+ +S ND S A  E ++GSE  F  LM++ A K+ + NT + N  GL      +T  D
Sbjct: 122 GLVVQSGNDASVAIAEHVAGSESGFVSLMNSWAAKLELNNTAFTNPHGLDSDGLYSTPYD 181

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A LG  + ++ P  Y  +S   F Y      N N LL ++  N+DG+KTGYT  +G+++
Sbjct: 182 IAKLGQAIIRDLPDIYPLYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYSL 241

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            TS    D  ++AVVMG  +   R+ ++ +L++
Sbjct: 242 ATSATQGDMRLIAVVMGAKSENIRESESKQLLS 274


>gi|269958469|ref|YP_003328256.1| D-alanyl-D-alanine carboxypeptidase [Anaplasma centrale str.
           Israel]
 gi|269848298|gb|ACZ48942.1| D-alanyl-D-alanine carboxypeptidase [Anaplasma centrale str.
           Israel]
          Length = 380

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 123/234 (52%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           S A ++H K  ++ +    ++  +     D    P+S++K+MTLY++F++L +  + ++ 
Sbjct: 25  SYALKMHTKAPHAIVYELGSRTVLFEHDADVAVAPSSMSKLMTLYLVFQHLHAGLIKMDD 84

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
              VS++A  +  S  +LK          I+     S ND   A  E +SGS+++F   +
Sbjct: 85  TFSVSESAWKRGGSSAFLKVGQMVKVRDLIMGAAVSSGNDACIALAEGVSGSQEQFVEDI 144

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
           +  AK++ + ++ + N +G  D+  + + RD   L + + ++FP+YY  F  ++F Y   
Sbjct: 145 NGLAKEMNLAHSSFTNVTGWPDEGHLMSVRDILTLSVRIFEDFPEYYHVFGEKQFTYNGV 204

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
              N+N LLN    +DGIKTG+T  +G+ I  S +  +  +  VV G+ T  ER
Sbjct: 205 TQKNYNTLLNYNIGVDGIKTGHTEKAGYGIAASAQKDNRRVFVVVNGLKTETER 258


>gi|37676160|ref|NP_936556.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus YJ016]
 gi|37200701|dbj|BAC96526.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus YJ016]
          Length = 391

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 119/213 (55%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + +    +  + Q+ +S+ A  +N    SK++++  T  + E    
Sbjct: 64  PASLTKLMTAYVAGQEMNRGNIRFSDQVVISRNAWAKNFPDSSKMFIEVGTSVSLEDLYR 123

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GS+  F  LM++ A K+G+QN+ + N  GL      +T RD
Sbjct: 124 GLIIQSGNDASVAIAEHVAGSQDAFVSLMNSWADKLGLQNSAFTNPHGLDSTGLYSTPRD 183

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A LG  + ++ P  Y  +S   F Y      N N LL ++   +DG+KTG+T  +G+++
Sbjct: 184 IAKLGQAIIRDLPSVYPMYSETSFTYNGITQYNRNGLLRDRSIAVDGMKTGFTSGAGYSL 243

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            TS    +  +++VVMG  ++  R+ ++ +L++
Sbjct: 244 ATSATSGNMRLISVVMGSNSTSSREAESKQLLS 276


>gi|120597860|ref|YP_962434.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella sp. W3-18-1]
 gi|146293967|ref|YP_001184391.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella putrefaciens
           CN-32]
 gi|120557953|gb|ABM23880.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Shewanella sp. W3-18-1]
 gi|145565657|gb|ABP76592.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella putrefaciens
           CN-32]
          Length = 391

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 123/214 (57%), Gaps = 6/214 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I + +++  +     + +SK A ++N    SK++++            
Sbjct: 63  PASLTKMMTSYVIGQEIKAGNVSPEDDVTISKNAWSKNFSDSSKMFIEVGKTVKVADLNR 122

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E I+G+E  F  +M++ +K++GM+++ ++N+ GL   N  TTA D
Sbjct: 123 GIIIQSGNDACVAMAEHIAGTEGAFVDMMNSWSKQLGMRDSYFENSHGLDSDNHKTTAYD 182

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFN 251
            A+LG  L ++ P+ Y+ +S + + +      N N LL  N M N+DGIKTG+T  +G+N
Sbjct: 183 MALLGAALIRDVPEEYRVYSEKFYTFNGIKQYNRNGLLWDNSM-NVDGIKTGHTSGAGYN 241

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +V S       +++VVMG  +   R  ++ +L+T
Sbjct: 242 LVASATKDGMRLISVVMGTQSEAARKAESKKLLT 275


>gi|167035845|ref|YP_001671076.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida GB-1]
 gi|166862333|gb|ABZ00741.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida GB-1]
          Length = 386

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 146/286 (51%), Gaps = 13/286 (4%)

Query: 27  NIQLMGKILFLSIIMI----SMASE--LHAKPKYSS---IVIDVNK-NQMTGFKQDEPRY 76
           NI  + K L L ++++    + A+E    A P+ ++   +++D +  N +     DE   
Sbjct: 2   NITNLAKRLCLPVLLMITPAAFAAEQMTPAPPQLAAKSYVLMDASSGNVLVENNGDERLP 61

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT YI    ++  ++  N  + VS+ A     S++++K  +  T    +  +I
Sbjct: 62  PASLTKLMTAYIATLDIRRGQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGII 121

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E I+GSE  FA +M+  A  +GM N+ + N +GL +    ++A D A 
Sbjct: 122 IQSGNDASVALSEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPNPEHYSSAHDMAT 181

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   +    P +Y  +S ++F + N    N N LL +   +DG+KTG+T  +G+ +V S 
Sbjct: 182 LARAIITVDPAHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVASA 241

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTH 299
                 ++AVV G  + Q R  +  +L+T    F E +T   + T 
Sbjct: 242 VRDGQRLIAVVFGTNSEQSRAAETQKLLTYGFRFFETQTFYQKGTE 287


>gi|315618015|gb|EFU98607.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 3431]
          Length = 390

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 134/246 (54%), Gaps = 11/246 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+HA    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + 
Sbjct: 35  EIHAG---SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT 91

Query: 106 VSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           V + A A  NP     S ++LKE    +       LI  S ND   A  ++I+G +++F 
Sbjct: 92  VGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFV 151

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+N A+K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +
Sbjct: 152 KMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTW 211

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL +K  N+DG+KTG+T  +GFN++         ++AVVMG  +++ R++
Sbjct: 212 NGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIALAVDGQRRLIAVVMGADSAKGREE 271

Query: 279 KALELI 284
           +A +L+
Sbjct: 272 EARKLL 277


>gi|320158294|ref|YP_004190672.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus MO6-24/O]
 gi|319933606|gb|ADV88469.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus MO6-24/O]
          Length = 387

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 119/213 (55%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + +    +  + Q+ +S+ A  +N    SK++++  T  + E    
Sbjct: 60  PASLTKLMTAYVAGQEMNRGNIRFSDQVVISRNAWAKNFPDSSKMFIEVGTSVSLEDLYR 119

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GS+  F  LM++ A K+G+QN+ + N  GL      +T RD
Sbjct: 120 GLIIQSGNDASVAIAEHVAGSQDAFVSLMNSWADKLGLQNSAFTNPHGLDSTGLYSTPRD 179

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A LG  + ++ P  Y  +S   F Y      N N LL ++   +DG+KTG+T  +G+++
Sbjct: 180 IAKLGQAIIRDLPSVYPMYSETSFTYNGITQYNRNGLLRDRSIAVDGMKTGFTSGAGYSL 239

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            TS    +  +++VVMG  ++  R+ ++ +L++
Sbjct: 240 ATSATSGNMRLISVVMGSNSTSSREAESKQLLS 272


>gi|208779297|ref|ZP_03246643.1| D-alanyl-D-alanine carboxypeptidase [Francisella novicida FTG]
 gi|254374319|ref|ZP_04989801.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella
           novicida GA99-3548]
 gi|151572039|gb|EDN37693.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella
           novicida GA99-3548]
 gi|208745097|gb|EDZ91395.1| D-alanyl-D-alanine carboxypeptidase [Francisella novicida FTG]
 gi|332678194|gb|AEE87323.1| D-alanyl-D-alanine carboxypeptidase [Francisella cf. novicida Fx1]
          Length = 444

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 124/271 (45%), Gaps = 52/271 (19%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D  R PASLTK+MT YI+   +++  L  +T IP+S+ AA+   SK+Y+K     +    
Sbjct: 74  DVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENAASTGGSKMYVKAGAKVSVRNL 133

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +   S ND + A  E+I G+ + F  LM+  AK IGM NT + N  GL    Q TTA
Sbjct: 134 VTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIGMNNTHFANPDGLPGGEQYTTA 193

Query: 192 RDQAILGILLRKNFPQYYKYF----------------------SIRKF-RYRNRII---- 224
            D A+L      NFP+ YK +                       + KF R    +I    
Sbjct: 194 HDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIADRKQCLPKFDRATGNVIESYT 253

Query: 225 -------------------------TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
                                     N N+LL      DG+KTG+T  +G+ +V+S +  
Sbjct: 254 VKGLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGADGMKTGHTDAAGYCLVSSAKQD 313

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            +  ++VV+G  +S +RD ++ +L+   L K
Sbjct: 314 GERFISVVLGTTSSAKRDSESAKLLRYALSK 344


>gi|254372818|ref|ZP_04988307.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella
           tularensis subsp. novicida GA99-3549]
 gi|151570545|gb|EDN36199.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella
           novicida GA99-3549]
          Length = 444

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 124/271 (45%), Gaps = 52/271 (19%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D  R PASLTK+MT YI+   +++  L  +T IP+S+ AA+   SK+Y+K     +    
Sbjct: 74  DVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENAASTGGSKMYVKAGAKVSVRNL 133

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +   S ND + A  E+I G+ + F  LM+  AK IGM NT + N  GL    Q TTA
Sbjct: 134 VTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIGMNNTHFANPDGLPGGEQYTTA 193

Query: 192 RDQAILGILLRKNFPQYYKYF----------------------SIRKF-RYRNRII---- 224
            D A+L      NFP+ YK +                       + KF R    +I    
Sbjct: 194 HDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIADRKQCLPKFDRATGNVIESYT 253

Query: 225 -------------------------TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
                                     N N+LL      DG+KTG+T  +G+ +V+S +  
Sbjct: 254 VKGLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGADGMKTGHTDAAGYCLVSSAKQD 313

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            +  ++VV+G  +S +RD ++ +L+   L K
Sbjct: 314 GERFISVVLGTTSSAKRDSESAKLLRYALSK 344


>gi|323940908|gb|EGB37096.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E482]
          Length = 388

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 131/238 (55%), Gaps = 8/238 (3%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT 112
           S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + V + A A 
Sbjct: 38  SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAK 97

Query: 113 QNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
            NP     S ++LKE    +       LI  S ND   A  ++I+G +++F  +M+N A+
Sbjct: 98  DNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAE 157

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           ++ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +      N 
Sbjct: 158 RLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNR 217

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R+++A +L+
Sbjct: 218 NGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLL 275


>gi|306843866|ref|ZP_07476461.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO1]
 gi|306275621|gb|EFM57345.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO1]
          Length = 396

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 118/218 (54%), Gaps = 5/218 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYF 126
           D+P  PASL K+MT  ++FE L+  +  L T  PVS+ A     A    S ++ + K+  
Sbjct: 59  DKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEYAWRTGGAPSGTSTMFARIKSTP 118

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           T    +  +I +SAND +    E ++GSE+ FA+ M+ +AK++G+ ++ + N++GL    
Sbjct: 119 TVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAVAMNQRAKELGLSSSKFVNSTGLPAAG 178

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           Q+ T  D   L   +    P+YY+Y++   + + N    N N LL      DG+ TG+T 
Sbjct: 179 QVVTLEDLLNLARHIHAAHPEYYRYYAQPAYTWNNITQRNRNPLLRLEVGADGMGTGFTE 238

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            SG+ +V S       +   + G+ + +ER+++A +LI
Sbjct: 239 ASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLI 276


>gi|204929188|ref|ZP_03220331.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204321732|gb|EDZ06931.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|322613672|gb|EFY10612.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620243|gb|EFY17112.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623289|gb|EFY20130.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322630494|gb|EFY27263.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632829|gb|EFY29574.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638838|gb|EFY35532.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640341|gb|EFY37000.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647153|gb|EFY43652.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648980|gb|EFY45423.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653886|gb|EFY50210.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660993|gb|EFY57222.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663066|gb|EFY59273.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668511|gb|EFY64666.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673354|gb|EFY69457.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322679140|gb|EFY75194.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683235|gb|EFY79250.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685895|gb|EFY81885.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195182|gb|EFZ80363.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198750|gb|EFZ83850.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202394|gb|EFZ87437.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323209221|gb|EFZ94157.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323209796|gb|EFZ94719.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216122|gb|EGA00852.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220678|gb|EGA05125.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323223727|gb|EGA08034.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231333|gb|EGA15447.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232575|gb|EGA16672.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240982|gb|EGA25022.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245599|gb|EGA29594.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247629|gb|EGA31578.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251071|gb|EGA34945.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323254840|gb|EGA38635.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263363|gb|EGA46897.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266318|gb|EGA49807.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271462|gb|EGA54884.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 390

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 138/261 (52%), Gaps = 8/261 (3%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           L+   +S A +  A    + +++D    Q +T   + + R PASLTK+MT Y++   + S
Sbjct: 22  LAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDS 81

Query: 96  KKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            ++  +  + V + A A  NP     S ++LKE    +       LI  S ND   A  +
Sbjct: 82  HRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALAD 141

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
           +I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D A+L   +    P++Y
Sbjct: 142 YIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFY 201

Query: 210 KYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +S +   +      N N LL +K  +IDG+KTG+T  +G+N++ S       ++AVVM
Sbjct: 202 HMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGYNLIASAVDGQRRLIAVVM 261

Query: 269 GMPTSQERDQKALELITSFLE 289
           G  +S+ R+++A +L+   L+
Sbjct: 262 GAKSSKGREEQARKLLQWGLQ 282


>gi|260549716|ref|ZP_05823933.1| penicillin-binding protein 6 [Acinetobacter sp. RUH2624]
 gi|260407233|gb|EEX00709.1| penicillin-binding protein 6 [Acinetobacter sp. RUH2624]
          Length = 382

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/248 (31%), Positives = 138/248 (55%), Gaps = 7/248 (2%)

Query: 45  ASELHAKPKY---SSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           A+ L A P+    S +++D    Q+   K ++E   PAS+TKMMT YII + L   +L  
Sbjct: 20  ATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMTKMMTSYIIEQKLLKGELTE 79

Query: 101 NTQIPVSKTAATQNPSK---LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           N ++ ++++A  +  S    +Y+      T  + +  +I +S ND S A  E I+G+E  
Sbjct: 80  NEKVRMNESAWCKGSSAESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAGNEGT 139

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           FA LM+ +AK+IGM NT + N++GL  +   +TA+D A+L   + K+  +YY  +S ++F
Sbjct: 140 FAHLMNQEAKRIGMTNTQFMNSTGLPAEGHYSTAKDMAVLAQHIIKDSSRYYPIYSEKEF 199

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
            +      N N LL    ++DG+KTG+T  +G+ + TS +     +++V+ G  +  ER 
Sbjct: 200 TFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLISVIFGTDSVNERA 259

Query: 278 QKALELIT 285
            +   L++
Sbjct: 260 NQTRALLS 267


>gi|319427343|gb|ADV55417.1| Beta-lactamase [Shewanella putrefaciens 200]
          Length = 391

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 123/214 (57%), Gaps = 6/214 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I + +++  +     + +SK A ++N    SK++++            
Sbjct: 63  PASLTKMMTSYVIGQEIKAGNVSPEDDVTISKNAWSKNFSDSSKMFIEVGKTVKVADLNR 122

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E I+G+E  F  +M++ +K++GM+++ ++N+ GL   N  TTA D
Sbjct: 123 GIIIQSGNDACVAMAEHIAGTEGAFVDMMNSWSKQLGMRDSYFENSHGLDSDNHKTTAYD 182

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFN 251
            A+LG  L ++ P+ Y+ +S + + +      N N LL  N M N+DGIKTG+T  +G+N
Sbjct: 183 MALLGAALIRDVPEEYRVYSEKFYTFNGIKQYNRNGLLWDNSM-NVDGIKTGHTSGAGYN 241

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +V S       +++VVMG  +   R  ++ +L+T
Sbjct: 242 LVASATKDGMRLISVVMGTQSEAARKAESKKLLT 275


>gi|302389347|ref|YP_003825168.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter
           oceani DSM 16646]
 gi|302199975|gb|ADL07545.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter
           oceani DSM 16646]
          Length = 410

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/198 (36%), Positives = 109/198 (55%), Gaps = 11/198 (5%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS TK+MT  I  E     K  L+  +   +     + +++YL+E    T EQ +  ++
Sbjct: 59  PASTTKIMTTVIALE-----KGKLSDTVVTGREPTLADGTRIYLEEGEKLTLEQMLYGMM 113

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A  E I+GS  +FA LM+ KA++IG +NT + N SGL DKN  TTA D A+
Sbjct: 114 LNSGNDAAVAIAEHIAGSVPEFAKLMNEKAREIGAKNTNFVNPSGLPDKNHYTTAYDLAL 173

Query: 197 LGILLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           +      N P++ K  S + F+        +R++ NHNK+L +    DG+KTGYTR++G 
Sbjct: 174 ISRYALLNHPEFRKIVSTKTFKIPWQGKEWDRLLINHNKMLWRYEGTDGVKTGYTRSAGQ 233

Query: 251 NIVTSLRYKDDPIVAVVM 268
             V S       ++AVV+
Sbjct: 234 TFVASATRNGWQLLAVVL 251


>gi|324016991|gb|EGB86210.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           117-3]
          Length = 347

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 125/226 (55%), Gaps = 7/226 (3%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLY 119
           +T   + + R PASLTK+MT Y++   + S ++  +  + V + A A  NP     S ++
Sbjct: 9   LTAVNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMF 68

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           LKE    +       LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++  
Sbjct: 69  LKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETV 128

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNID 238
            GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL +K  N+D
Sbjct: 129 HGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVD 188

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           G+KTG+T  +GFN++ S       ++AVVMG  +++ R+++A +L+
Sbjct: 189 GLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLL 234


>gi|323705320|ref|ZP_08116895.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535222|gb|EGB24998.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 384

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/256 (32%), Positives = 139/256 (54%), Gaps = 7/256 (2%)

Query: 34  ILFLSIIM--ISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIF 90
           +L  S+++   + A   + K K S+I++D N  ++   K   E   PAS+TK+MT+ ++ 
Sbjct: 13  VLICSVLLENFAYADNFNLKSK-SAILMDANTGKVLYEKNSHEELPPASVTKVMTMLLVI 71

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           E L S K+    ++  S+ A     +++YL+     T +  + ++   SAND S A  E+
Sbjct: 72  EALDSGKIKTTDKVVTSEHAYDMGGTQIYLEVGEEMTVDDLLKSVAMNSANDASVALAEY 131

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           ISGSE+KF   M+ +AK++G +NT +KNASGL +    T+  D A++   L K+    +K
Sbjct: 132 ISGSEEKFVEEMNKRAKELGAKNTNFKNASGLPEDGHYTSVYDMALISRELVKH-KNVFK 190

Query: 211 YFSIRKFRYRNR--IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           Y + +    RN    + N NKLL      DGIKTG T  + + +  + +  D   +AVV 
Sbjct: 191 YLTDKIDSVRNGKFSLANTNKLLWNYQGADGIKTGSTSEALYCLSATAKRGDTRFIAVVF 250

Query: 269 GMPTSQERDQKALELI 284
           G P S  R ++A +L+
Sbjct: 251 GAPDSATRFKEASKLL 266


>gi|241204717|ref|YP_002975813.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240858607|gb|ACS56274.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 397

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 115/223 (51%), Gaps = 11/223 (4%)

Query: 63  KNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSK 117
           KN+  GF       PASL K+MT+ + FE L   ++ L+T+ PVS+ A     A    + 
Sbjct: 50  KNEDQGFS------PASLAKLMTMDLAFEALTKGQITLDTEYPVSEYAWRTGGAPSRTAT 103

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           ++   K+    E  I  +  + AND      E ++GSE++FA+ M+ +A+++GM+   + 
Sbjct: 104 MFASLKSRVRVEDLIKGVAIQGANDSCIILAEGMAGSEQQFAVSMTRRARELGMEKAEFG 163

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNI 237
           N++GL D     TAR+   L   L++ +P  Y YF+   F +      N N LL      
Sbjct: 164 NSTGLPDGKSKVTAREMVTLAAALQQTYPNLYPYFAQPDFEWNKIFQRNRNPLLGLDLGA 223

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           DG+ TG+T   G++IV S+      +   + G+ + +ER ++A
Sbjct: 224 DGLATGFTEGEGYSIVASVERDGRRLFVALAGIASDKERTEEA 266


>gi|9971925|gb|AAG10487.1|AF279106_49 predicted penicillin-binding protein 6 precursor [uncultured marine
           gamma proteobacterium EBAC31A08]
          Length = 385

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 139/262 (53%), Gaps = 10/262 (3%)

Query: 31  MGKILFLSI---IMISMASELHAKPKY---SSIVIDVNKNQMTG-FKQDEPRYPASLTKM 83
           M K+LF  +   I I   S +   P+    S I+I+ N N +   F  D    PAS+TK+
Sbjct: 1   MKKLLFTLLSTSIFIQAQSFVPDSPELDLKSYILIEPNTNTVIAEFNSDLEIEPASMTKI 60

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT Y++ + + +  + L+ ++ +S+ A     SK +++     T    +  ++ +S ND 
Sbjct: 61  MTSYVVADQIANGLISLDDEVLISEKAWRMQGSKTFIEAGKKVTVSDLLKGIMIQSGNDA 120

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           S A  E+  G+E+ F  LM++ A  + M NTI++N++GL D+N  ++A+D A L      
Sbjct: 121 SVAIAEYAGGTERGFVDLMNSYAASLEMNNTIFQNSTGLPDENHFSSAKDLANLTANYIN 180

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
            FP+ Y  +  ++F + N    N NKLL +  + DG+KTG+T  +G+ +V S +     +
Sbjct: 181 KFPEEYALYKQKQFTFNNIKQLNRNKLLWRDDSADGVKTGHTEAAGYCLVGSAKRGGMRL 240

Query: 264 VAVVMGMPTSQER---DQKALE 282
           + VV G  +  +R    Q+ LE
Sbjct: 241 ITVVAGSKSDNDRFLSSQRLLE 262


>gi|56708118|ref|YP_170014.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein)
           family protein [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670589|ref|YP_667146.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein)
           family protein [Francisella tularensis subsp. tularensis
           FSC198]
 gi|134301929|ref|YP_001121898.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|224457209|ref|ZP_03665682.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254370602|ref|ZP_04986607.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874916|ref|ZP_05247626.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604610|emb|CAG45662.1| D-alanyl-D-alanine carboxypeptidase (Penicillin binding protein)
           family protein [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110320922|emb|CAL09045.1| D-alanyl-D-alanine carboxypeptidase (Penicillin binding protein)
           family protein [Francisella tularensis subsp. tularensis
           FSC198]
 gi|134049706|gb|ABO46777.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|151568845|gb|EDN34499.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840915|gb|EET19351.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159318|gb|ADA78709.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 444

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 124/271 (45%), Gaps = 52/271 (19%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D  R PASLTK+MT YI+   +++  L  +T IP+S+ AA+   SK+Y+K     +    
Sbjct: 74  DVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENAASTGGSKMYVKAGAKVSVRNL 133

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +   S ND + A  E+I G+ + F  LM+  AK IGM NT + N  GL    Q TTA
Sbjct: 134 VTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIGMNNTHFANPDGLPGGEQYTTA 193

Query: 192 RDQAILGILLRKNFPQYYKYF----------------------SIRKF-RYRNRII---- 224
            D A+L      NFP+ YK +                       + KF R    +I    
Sbjct: 194 HDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIADRKQCLPKFDRATGNVIESYT 253

Query: 225 -------------------------TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
                                     N N+LL      DG+KTG+T  +G+ +V+S +  
Sbjct: 254 VKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGADGMKTGHTDAAGYCLVSSAKQD 313

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            +  ++VV+G  +S +RD ++ +L+   L K
Sbjct: 314 GERFISVVLGTTSSAKRDSESAKLLRYALSK 344


>gi|330448017|ref|ZP_08311665.1| penicillin-binding 6 domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492208|dbj|GAA06162.1| penicillin-binding 6 domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 459

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 117/216 (54%), Gaps = 3/216 (1%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           I++D N  Q+        R  PAS TK+M +YI+ + L    + L++++ V + A     
Sbjct: 107 ILMDANTGQIIASNDANMRMAPASTTKLMLMYIVEQKLADGVISLDSKVQVPEVAWRTGG 166

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S+++LK  +Y + ++ I  +I  S ND +     +++GS+  F  +M+  A K+GM NT 
Sbjct: 167 SRMFLKPGSYVSVKELIQGVIVESGNDAAVTLANYVAGSQSSFVSMMNATAVKLGMHNTH 226

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           +    GL      +TA D  +LG  +  ++PQY+ +FS + F Y +    N N+LL    
Sbjct: 227 FTTVMGLPAPAHFSTAYDLGLLGQHIMNDYPQYFHFFSQKYFEYNHIRQPNFNRLLFTYQ 286

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDP--IVAVVMG 269
              G+KTG T  +G+++V+S    ++P  +V VV+G
Sbjct: 287 YATGMKTGSTEAAGYSLVSSAEIPNNPMKLVGVVLG 322


>gi|311278994|ref|YP_003941225.1| Beta-lactamase [Enterobacter cloacae SCF1]
 gi|308748189|gb|ADO47941.1| Beta-lactamase [Enterobacter cloacae SCF1]
          Length = 395

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 127/236 (53%), Gaps = 8/236 (3%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           +++D    Q +T   + + R PASLTK+MT Y++   + S+K+  +  + V   A A  N
Sbjct: 47  VLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSRKITPDDMVTVGHDAWAKGN 106

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S ++LK     T       LI  S ND   A  ++++G + +F  LM+   +K+
Sbjct: 107 PVFDGSSLMFLKPGDRLTVRDLSRGLIVDSGNDACVALADYVAGGQPQFVQLMNGYVQKL 166

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+++T ++   GL    Q ++A D A+L   +    P +Y  +S +   +      N N 
Sbjct: 167 GLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPDFYHMYSEKSLTWNGITQQNRNG 226

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           LL +K  N+DG+KTG+T  +GFN++ S    +  ++AVVMG  +++ R+++A +L+
Sbjct: 227 LLWDKTMNVDGLKTGHTSGAGFNLIASAVDGERRLIAVVMGAESAKGREEQARKLL 282


>gi|260892753|ref|YP_003238850.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ammonifex degensii KC4]
 gi|260864894|gb|ACX52000.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ammonifex degensii KC4]
          Length = 381

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 137/253 (54%), Gaps = 17/253 (6%)

Query: 33  KILFLSIIMI---------SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           K LFL+ ++          + AS   +    S+++++ +  Q+ G K+   + P AS+ K
Sbjct: 4   KALFLTTLLAFSLLVANSRACASPFLSTTAKSAVLMEAHHGQILGEKELHRKQPIASMVK 63

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MTL +  E ++  K+ L  ++  S+ AA+   S+++L  +   +    ++A+ T SAND
Sbjct: 64  LMTLLLAVEAVEQGKVRLADKVTASEHAASMGGSQIFLAPEEVMSFRDLLIAVATASAND 123

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            S A  E ++GSE+ F   M+ KA+ +GM+NT Y NA+GL  + Q +TA DQA   +LLR
Sbjct: 124 ASVAVAEHVAGSEEAFVAAMNAKARALGMENTHYVNATGLPAEGQYSTAYDQA---LLLR 180

Query: 203 KNF--PQYYKYFSIRKFRYRNR--IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
           +    P + +   I+++  R     + N NKLL         KTG+T  +G+ + ++ + 
Sbjct: 181 EALKHPLFLELAQIKEYSLRGGKFKLYNTNKLLWWYRGTIAGKTGWTEEAGYCLASAAKR 240

Query: 259 KDDPIVAVVMGMP 271
           +   ++ VV+G P
Sbjct: 241 QGLTLITVVLGCP 253


>gi|326202106|ref|ZP_08191976.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium papyrosolvens
           DSM 2782]
 gi|325987901|gb|EGD48727.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium papyrosolvens
           DSM 2782]
          Length = 408

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 131/233 (56%), Gaps = 7/233 (3%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           +L AK   S++++D    ++   K    R   AS+TK+MT+ +I E + S +   + ++ 
Sbjct: 55  DLRAK---SAVLMDAASGKVLSEKNSHERLAIASVTKVMTMLLIMEAIDSGRFTFDDKVS 111

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           VS+ +A    S+ Y++    FT  + + AL   S+NDV+ A  E +SGSE+ F   M+NK
Sbjct: 112 VSEYSAGMGGSQAYMEPGEEFTVTEMMNALAIHSSNDVAVALAEKVSGSEETFVTDMNNK 171

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-- 223
           A+ +GM++T + + +GL+D +  ++A D A++   L    P+  ++       +RN    
Sbjct: 172 AQALGMKDTKFMDCTGLND-DGYSSAHDVALMSRELVMKHPKVLQFTGKWHDTFRNGTFD 230

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           + N NKL+    N DG+KTG+T  +GFN+  + R  +  +V+VV+G P S  R
Sbjct: 231 LYNTNKLVKFYANCDGLKTGFTSKAGFNLSATTRRNNLRLVSVVLGEPDSNTR 283


>gi|322833903|ref|YP_004213930.1| Beta-lactamase [Rahnella sp. Y9602]
 gi|321169104|gb|ADW74803.1| Beta-lactamase [Rahnella sp. Y9602]
          Length = 402

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 128/237 (54%), Gaps = 8/237 (3%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           I+ID N  + +     D  R PASLTKMMT Y+I + +++ K+     + V   A AT N
Sbjct: 49  ILIDYNSGKVLAEMNADARRDPASLTKMMTSYVIGQSIKAGKISPTDIVTVGPDAWATGN 108

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S ++LK        +    +I +S ND   A  + ++GS+  F  +M+N    +
Sbjct: 109 PVFKGSSLMFLKPGDRVPVSELNRGIILQSGNDACVAMADHVAGSQDAFVAIMNNYVNSL 168

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G++NT +    GL    Q ++ARD A++G  L ++ P+ Y  +  ++F + N    N N 
Sbjct: 169 GLKNTHFGTVHGLDAAGQYSSARDMALIGQALIRDVPEEYATYKEKEFTFNNIRQMNRNG 228

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL +   N+DGIKTG+T ++G+N+V S       +++ VMG  T + R+ ++ +L+T
Sbjct: 229 LLWDNSLNVDGIKTGHTDSAGYNLVASATEGQMRLISAVMGGHTYKGREVESKKLLT 285


>gi|187931647|ref|YP_001891631.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712556|gb|ACD30853.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 444

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 124/271 (45%), Gaps = 52/271 (19%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D  R PASLTK+MT YI+   +++  L  +T IP+S+ AA+   SK+Y+K     +    
Sbjct: 74  DVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENAASTGGSKMYVKAGAKVSVRNL 133

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +   S ND + A  E+I G+ + F  LM+  AK IGM NT + N  GL    Q TTA
Sbjct: 134 VTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIGMNNTHFANPDGLPGGEQYTTA 193

Query: 192 RDQAILGILLRKNFPQYYKYF----------------------SIRKF-RYRNRII---- 224
            D A+L      NFP+ YK +                       + KF R    +I    
Sbjct: 194 HDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIADRKQCLPKFDRATGNVIESYT 253

Query: 225 -------------------------TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
                                     N N+LL      DG+KTG+T  +G+ +V+S +  
Sbjct: 254 VKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGADGMKTGHTDAAGYCLVSSAKQD 313

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            +  ++VV+G  +S +RD ++ +L+   L K
Sbjct: 314 GERFISVVLGTTSSAKRDSESAKLLRYALSK 344


>gi|255318395|ref|ZP_05359628.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter radioresistens
           SK82]
 gi|262378625|ref|ZP_06071782.1| D-Ala-D-Ala-carboxypeptidase penicillin-binding protein
           [Acinetobacter radioresistens SH164]
 gi|255304387|gb|EET83571.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter radioresistens
           SK82]
 gi|262299910|gb|EEY87822.1| D-Ala-D-Ala-carboxypeptidase penicillin-binding protein
           [Acinetobacter radioresistens SH164]
          Length = 437

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/238 (34%), Positives = 129/238 (54%), Gaps = 12/238 (5%)

Query: 58  VIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN---TQIPVSKTAATQ 113
           ++D    Q+   +  +  R PASLTKMM  YI  + +++ KL+ N   T  PV K     
Sbjct: 38  ILDPQSGQIIAEYNSEVQRSPASLTKMMVAYIALKEIENGKLNRNEILTATPVVKMV-MW 96

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           + S++YLKE    + +Q +  LI  SAND +    E ISG+   F   M+ +A+K+GM+N
Sbjct: 97  DESQMYLKEGEQISVDQLLAGLIVMSANDAAVTLAERISGNVPAFIERMNQEAQKLGMKN 156

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           T + N +G+      +TA D A+LG  L  + P Y  Y   + F Y N      N LL +
Sbjct: 157 THFTNPAGITMDGHYSTAHDLALLGQALVNDTPDYLNYSKQQSFTYNNHFHRATNLLLKQ 216

Query: 234 MHNIDGIKTGYTRNSGFNI-VTSLR---YKDDP---IVAVVMGMPTSQERDQKALELI 284
              +DG+KTG+T+ +G+N+ +T+ R     D P   ++ VVMG  ++ +R + A +L+
Sbjct: 217 DATVDGLKTGFTKAAGYNLALTASRPTMNADLPNRRLIVVVMGTTSAVKRAEVAYKLL 274


>gi|118497499|ref|YP_898549.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
           novicida U112]
 gi|195536192|ref|ZP_03079199.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
           novicida FTE]
 gi|118423405|gb|ABK89795.1| D-alanyl-D-alanine carboxypeptidase [Francisella novicida U112]
 gi|194372669|gb|EDX27380.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
           novicida FTE]
          Length = 444

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 124/271 (45%), Gaps = 52/271 (19%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D  R PASLTK+MT YI+   +++  L  +T +P+S+ AA+   SK+Y+K     +    
Sbjct: 74  DVRRAPASLTKIMTSYIVASEIKAGNLSWDTMVPISENAASTGGSKMYVKAGAKVSVRNL 133

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +   S ND + A  E+I G+ + F  LM+  AK IGM NT + N  GL    Q TTA
Sbjct: 134 VTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIGMNNTHFANPDGLPGGEQYTTA 193

Query: 192 RDQAILGILLRKNFPQYYKYF----------------------SIRKF-RYRNRII---- 224
            D A+L      NFP+ YK +                       + KF R    +I    
Sbjct: 194 HDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIADRKQCLPKFDRATGNVIESYT 253

Query: 225 -------------------------TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
                                     N N+LL      DG+KTG+T  +G+ +V+S +  
Sbjct: 254 VKGLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGADGMKTGHTDAAGYCLVSSAKQD 313

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            +  ++VV+G  +S +RD ++ +L+   L K
Sbjct: 314 SERFISVVLGTTSSAKRDSESAKLLRYALSK 344


>gi|300903877|ref|ZP_07121778.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1]
 gi|301307141|ref|ZP_07213170.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           124-1]
 gi|300404135|gb|EFJ87673.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1]
 gi|300837656|gb|EFK65416.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           124-1]
 gi|315253360|gb|EFU33328.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 85-1]
          Length = 347

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 125/226 (55%), Gaps = 7/226 (3%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLY 119
           +T   + + R PASLTK+MT Y++   + S ++  +  + V + A A  NP     S ++
Sbjct: 9   LTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMF 68

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           LKE    +       LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++  
Sbjct: 69  LKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETV 128

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNID 238
            GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL +K  N+D
Sbjct: 129 HGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVD 188

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           G+KTG+T  +GFN++ S       ++AVVMG  +++ R+++A +L+
Sbjct: 189 GLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLL 234


>gi|254518746|ref|ZP_05130802.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp.
           7_2_43FAA]
 gi|226912495|gb|EEH97696.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp.
           7_2_43FAA]
          Length = 401

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 153/317 (48%), Gaps = 41/317 (12%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           I +   S L  +PK   I+ + N         DE   PAS+TK+MT+ +  E + S K+ 
Sbjct: 46  INVDAKSALLIEPKSGKILYEKN--------IDEKFAPASVTKIMTMLLTMEAVDSGKIT 97

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           L  ++  S+ A     S + L      T E+ I  +   S ND + A  E++ G+E  F 
Sbjct: 98  LQDKVTCSENAKKMGGSTMLLDTGEIRTVEELIKGVAIASGNDAAVALAEYLGGTEDAFV 157

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF-----SI 214
            +M+ +A+++GM NT +KN +GL  +  ++TARD +I+ + L K+ P   KY      +I
Sbjct: 158 EMMNKRAQELGMVNTTFKNCNGLPIEGHLSTARDISIMSLELLKH-PTILKYSGIYMETI 216

Query: 215 RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
            + R     + NHNKL+      DG+KTGYT  + + I  +       +++V+MG PT +
Sbjct: 217 SEGRKSPIELVNHNKLVRFFEGCDGLKTGYTEEAKYCISATATRNGVRMLSVIMGAPTYK 276

Query: 275 ERDQKALELI--------------------TSFLEKKTLKHQQTHRKDNL-------SST 307
            R++ A  L+                      +L K+T K      K++L       ++ 
Sbjct: 277 VRNRDAGMLLNYGFSKFEGKKLLSKDEDVENIYLSKQTDKFLVARAKEDLVAIVPKGTNE 336

Query: 308 SLKKSLMIKKLKRTYSQ 324
            L+K ++I ++K+ Y Q
Sbjct: 337 ELEKRIVIDEVKKEYKQ 353


>gi|300935769|ref|ZP_07150733.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1]
 gi|300974063|ref|ZP_07172437.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           200-1]
 gi|300308960|gb|EFJ63480.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           200-1]
 gi|300459040|gb|EFK22533.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1]
 gi|315285607|gb|EFU45049.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           110-3]
 gi|324015750|gb|EGB84969.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 60-1]
          Length = 347

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 125/226 (55%), Gaps = 7/226 (3%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLY 119
           +T   + + R PASLTK+MT Y++   + S ++  +  + V + A A  NP     S ++
Sbjct: 9   LTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMF 68

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           LKE    +       LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++  
Sbjct: 69  LKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETV 128

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNID 238
            GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL +K  N+D
Sbjct: 129 HGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVD 188

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           G+KTG+T  +GFN++ S       ++AVVMG  +++ R+++A +L+
Sbjct: 189 GLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLL 234


>gi|300898616|ref|ZP_07116943.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           198-1]
 gi|300956273|ref|ZP_07168579.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           175-1]
 gi|405953|gb|AAA16416.1| yeeC [Escherichia coli]
 gi|300316896|gb|EFJ66680.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           175-1]
 gi|300357712|gb|EFJ73582.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           198-1]
          Length = 347

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 125/226 (55%), Gaps = 7/226 (3%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLY 119
           +T   + + R PASLTK+MT Y++   + S ++  +  + V + A A  NP     S ++
Sbjct: 9   LTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMF 68

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           LKE    +       LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++  
Sbjct: 69  LKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETV 128

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNID 238
            GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL +K  N+D
Sbjct: 129 HGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVD 188

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           G+KTG+T  +GFN++ S       ++AVVMG  +++ R+++A +L+
Sbjct: 189 GLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLL 234


>gi|117624214|ref|YP_853127.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli APEC O1]
 gi|301019170|ref|ZP_07183370.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1]
 gi|301050040|ref|ZP_07196954.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           185-1]
 gi|301648516|ref|ZP_07248240.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           146-1]
 gi|309797269|ref|ZP_07691664.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           145-7]
 gi|331658091|ref|ZP_08359053.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli TA206]
 gi|115513338|gb|ABJ01413.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli APEC O1]
 gi|300298224|gb|EFJ54609.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           185-1]
 gi|300399363|gb|EFJ82901.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1]
 gi|301073419|gb|EFK88225.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           146-1]
 gi|308119144|gb|EFO56406.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           145-7]
 gi|320198701|gb|EFW73301.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli EC4100B]
 gi|323183797|gb|EFZ69188.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 1357]
 gi|323951763|gb|EGB47637.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H252]
 gi|323972841|gb|EGB68040.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TA007]
 gi|324008953|gb|EGB78172.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 57-2]
 gi|326338366|gb|EGD62194.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           1044]
 gi|326347113|gb|EGD70846.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           1125]
 gi|331056339|gb|EGI28348.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli TA206]
          Length = 347

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 125/226 (55%), Gaps = 7/226 (3%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLY 119
           +T   + + R PASLTK+MT Y++   + S ++  +  + V + A A  NP     S ++
Sbjct: 9   LTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMF 68

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           LKE    +       LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++  
Sbjct: 69  LKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETV 128

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNID 238
            GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL +K  N+D
Sbjct: 129 HGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVD 188

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           G+KTG+T  +GFN++ S       ++AVVMG  +++ R+++A +L+
Sbjct: 189 GLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLL 234


>gi|315296383|gb|EFU55683.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 16-3]
          Length = 347

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 125/226 (55%), Gaps = 7/226 (3%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLY 119
           +T   + + R PASLTK+MT Y++   + S ++  +  + V + A A  NP     S ++
Sbjct: 9   LTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMF 68

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           LKE    +       LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++  
Sbjct: 69  LKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETV 128

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNID 238
            GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL +K  N+D
Sbjct: 129 HGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVD 188

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           G+KTG+T  +GFN++ S       ++AVVMG  +++ R+++A +L+
Sbjct: 189 GLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLL 234


>gi|300824757|ref|ZP_07104862.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           119-7]
 gi|300920250|ref|ZP_07136696.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           115-1]
 gi|301018907|ref|ZP_07183137.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           196-1]
 gi|299882461|gb|EFI90672.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           196-1]
 gi|300412752|gb|EFJ96062.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           115-1]
 gi|300522744|gb|EFK43813.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           119-7]
 gi|323172598|gb|EFZ58232.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli LT-68]
          Length = 347

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 125/226 (55%), Gaps = 7/226 (3%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLY 119
           +T   + + R PASLTK+MT Y++   + S ++  +  + V + A A  NP     S ++
Sbjct: 9   LTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMF 68

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           LKE    +       LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++  
Sbjct: 69  LKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETV 128

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNID 238
            GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL +K  N+D
Sbjct: 129 HGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVD 188

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           G+KTG+T  +GFN++ S       ++AVVMG  +++ R+++A +L+
Sbjct: 189 GLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLL 234


>gi|57339684|gb|AAW49829.1| hypothetical protein FTT1029 [synthetic construct]
          Length = 479

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 124/271 (45%), Gaps = 52/271 (19%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D  R PASLTK+MT YI+   +++  L  +T IP+S+ AA+   SK+Y+K     +    
Sbjct: 100 DVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENAASTGGSKMYVKAGAKVSVRNL 159

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +   S ND + A  E+I G+ + F  LM+  AK IGM NT + N  GL    Q TTA
Sbjct: 160 VTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIGMNNTHFANPDGLPGGEQYTTA 219

Query: 192 RDQAILGILLRKNFPQYYKYF----------------------SIRKF-RYRNRII---- 224
            D A+L      NFP+ YK +                       + KF R    +I    
Sbjct: 220 HDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIADRKQCLPKFDRATGNVIESYT 279

Query: 225 -------------------------TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
                                     N N+LL      DG+KTG+T  +G+ +V+S +  
Sbjct: 280 VKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGADGMKTGHTDAAGYCLVSSAKQD 339

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            +  ++VV+G  +S +RD ++ +L+   L K
Sbjct: 340 GERFISVVLGTTSSAKRDSESAKLLRYALSK 370


>gi|197264724|ref|ZP_03164798.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197242979|gb|EDY25599.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
          Length = 390

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 136/256 (53%), Gaps = 8/256 (3%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           L+   +S A +  A    + +++D    Q +T   + + R PASLTK+MT Y++   + S
Sbjct: 22  LAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDS 81

Query: 96  KKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            ++  +  + V + A A  NP     S ++LKE    +       LI  S ND   A  +
Sbjct: 82  HRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVHDLSRGLIVDSGNDACVALAD 141

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
           +I+G + +F  +M++  KK+ +++T ++   GL    Q ++A D A+L   +    P++Y
Sbjct: 142 YIAGGQPQFVAMMNSYVKKLNLRDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFY 201

Query: 210 KYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +S +   +      N N LL +K  +IDG+KTG+T  +GFN++ S       ++AVVM
Sbjct: 202 HMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNLIASAVDGQRRLIAVVM 261

Query: 269 GMPTSQERDQKALELI 284
           G  +S+ R+++A +L+
Sbjct: 262 GAKSSKGREEQARKLL 277


>gi|74095596|emb|CAJ27362.1| strongly similar to penicillin-binding protein 5 precursor
           [Cronobacter sakazakii]
          Length = 404

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 129/237 (54%), Gaps = 8/237 (3%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K   +  + +   A AT N
Sbjct: 51  ILIDYNSGKVLAEQNADARRDPASLTKMMTSYVIGQAMKAGKFKESDLVTIGNDAWATGN 110

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S ++LK        Q I  +  +S ND   A  ++++GS+  F  LM++    +
Sbjct: 111 PVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYVAGSQDAFVGLMNSYVTAL 170

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  +  ++F +     TN N 
Sbjct: 171 GLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQTNRNG 230

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T
Sbjct: 231 LLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLT 287


>gi|143439|gb|AAA22704.1| DD-carboxypeptidase [Bacillus subtilis]
          Length = 389

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 139/251 (55%), Gaps = 20/251 (7%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           SEL  + K S+++I+ +  ++   K    R  PAS+TK+MT+ +I E L   K+ ++ ++
Sbjct: 31  SELAHEAK-SAVLIERDTGKVLYNKNSNERLAPASMTKIMTMLLIMEALDKGKIKMSDKV 89

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
             S+ AA+   S+++L+     T ++ +  +   S ND S A  EFISGSE++F   M+ 
Sbjct: 90  RTSEHAASMGGSQIFLEPGEEMTVKEMLKGIAIASGNDASVAMAEFISGSEEEFVKKMNK 149

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF--RYRNR 222
           KAK++G++NT +KN +GL ++   ++A D AI+         +  KY SI KF   Y + 
Sbjct: 150 KAKELGLKNTSFKNPTGLTEEGHYSSAYDMAIMA-------KELLKYESITKFTGTYEDY 202

Query: 223 I---------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           +         + N N+L+     +DG+KTGYT  + + +  S +  +   +AVV G  T 
Sbjct: 203 LRENTDKKFWLVNTNRLIKFYPGVDGVKTGYTGEAKYCLTASAKKGNMRAIAVVFGASTP 262

Query: 274 QERDQKALELI 284
           +ER+ +  +++
Sbjct: 263 KERNAQVTKML 273


>gi|320175602|gb|EFW50695.1| D-alanyl-D-alanine carboxypeptidase [Shigella dysenteriae CDC
           74-1112]
          Length = 347

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 125/226 (55%), Gaps = 7/226 (3%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLY 119
           +T   + + R PASLTK+MT Y++   + S ++  +  + V + A A  NP     S ++
Sbjct: 9   LTAGNEHQQRNPASLTKLMTGYVVDRTIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMF 68

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           LKE    +       LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++  
Sbjct: 69  LKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETV 128

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNID 238
            GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL +K  N+D
Sbjct: 129 HGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVD 188

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           G+KTG+T  +GFN++ S       ++AVVMG  +++ R+++A +L+
Sbjct: 189 GLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLL 234


>gi|300930715|ref|ZP_07146093.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           187-1]
 gi|301330462|ref|ZP_07223080.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1]
 gi|300461436|gb|EFK24929.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           187-1]
 gi|300843583|gb|EFK71343.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1]
 gi|332092389|gb|EGI97462.1| D-alanyl-D-alanine carboxypeptidase dacD [Shigella boydii 5216-82]
          Length = 347

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 125/226 (55%), Gaps = 7/226 (3%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLY 119
           +T   + + R PASLTK+MT Y++   + S ++  +  + V + A A  NP     S ++
Sbjct: 9   LTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMF 68

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           LKE    +       LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++  
Sbjct: 69  LKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETV 128

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNID 238
            GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL +K  N+D
Sbjct: 129 HGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVD 188

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           G+KTG+T  +GFN++ S       ++AVVMG  +++ R+++A +L+
Sbjct: 189 GLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEAKKLL 234


>gi|156934847|ref|YP_001438763.1| D-alanyl-D-alanine carboxypeptidase fraction A [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156533101|gb|ABU77927.1| hypothetical protein ESA_02695 [Cronobacter sakazakii ATCC BAA-894]
          Length = 428

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 129/237 (54%), Gaps = 8/237 (3%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K   +  + +   A AT N
Sbjct: 75  ILIDYNSGKVLAEQNADARRDPASLTKMMTSYVIGQAMKAGKFKESDLVTIGNDAWATGN 134

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S ++LK        Q I  +  +S ND   A  ++++GS+  F  LM++    +
Sbjct: 135 PVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYVAGSQDAFVGLMNSYVTAL 194

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  +  ++F +     TN N 
Sbjct: 195 GLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQTNRNG 254

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T
Sbjct: 255 LLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLT 311


>gi|321311824|ref|YP_004204111.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5]
 gi|320018098|gb|ADV93084.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5]
          Length = 389

 Score =  122 bits (306), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 139/251 (55%), Gaps = 20/251 (7%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           SEL  + K S+++I+ +  ++   K    R  PAS+TK+MT+ +I E L   K+ ++ ++
Sbjct: 31  SELAHEAK-SAVLIERDTGKVLYNKNSNERLAPASMTKIMTMLLIMEALDKGKIKMSDKV 89

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
             S+ AA+   S+++L+     T ++ +  +   S ND S A  EFISGSE++F   M+ 
Sbjct: 90  RTSEHAASMGGSQIFLEPGEEMTVKEMLKGIAIASGNDASVAMAEFISGSEEEFVQKMNK 149

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF--RYRNR 222
           KAK++G++NT +KN +GL ++   ++A D AI+         +  KY SI KF   Y + 
Sbjct: 150 KAKELGLKNTSFKNPTGLTEEGHYSSAYDMAIMA-------KELLKYESITKFTGTYEDY 202

Query: 223 I---------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           +         + N N+L+     +DG+KTGYT  + + +  S +  +   +AVV G  T 
Sbjct: 203 LRENTDKKFWLVNTNRLIKFYPGVDGVKTGYTGEAKYCLTASAKKGNMRAIAVVFGASTP 262

Query: 274 QERDQKALELI 284
           +ER+ +  +++
Sbjct: 263 KERNAQVTKML 273


>gi|291484778|dbj|BAI85853.1| penicillin-binding protein [Bacillus subtilis subsp. natto BEST195]
          Length = 389

 Score =  122 bits (306), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 139/251 (55%), Gaps = 20/251 (7%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           SEL  + K S+++I+ +  ++   K    R  PAS+TK+MT+ +I E L   K+ ++ ++
Sbjct: 31  SELAHEAK-SAVLIERDTGKVLYNKNSNERLAPASMTKIMTMLLIMEALDKGKIKMSDKV 89

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
             S+ AA+   S+++L+     T ++ +  +   S ND S A  EFISGSE++F   M+ 
Sbjct: 90  RTSEHAASMGGSQIFLEPGEEMTVKEMLKGIAIASGNDASVAMAEFISGSEEEFVKKMNK 149

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF--RYRNR 222
           KAK++G++NT +KN +GL ++   ++A D AI+         +  KY SI KF   Y + 
Sbjct: 150 KAKELGLKNTSFKNPTGLTEEGHYSSAYDMAIMA-------KELLKYESITKFTGTYEDY 202

Query: 223 I---------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           +         + N N+L+     +DG+KTGYT  + + +  S +  +   +AVV G  T 
Sbjct: 203 LRENTDKKFWLVNTNRLIKFYPGVDGVKTGYTGEAKYCLTASAKKGNMRAIAVVFGASTP 262

Query: 274 QERDQKALELI 284
           +ER+ +  +++
Sbjct: 263 KERNAQVTKML 273


>gi|260597057|ref|YP_003209628.1| D-alanyl-D-alanine carboxypeptidase fraction A [Cronobacter
           turicensis z3032]
 gi|260216234|emb|CBA29137.1| D-alanyl-D-alanine carboxypeptidase dacA [Cronobacter turicensis
           z3032]
          Length = 370

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 129/237 (54%), Gaps = 8/237 (3%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K   +  + +   A AT N
Sbjct: 17  ILIDYNSGKVLAEQNADARRDPASLTKMMTSYVIGQAMKAGKFKESDVVTIGNDAWATGN 76

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S ++LK        Q I  +  +S ND   A  ++++GS+  F  LM++    +
Sbjct: 77  PVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYVAGSQDAFVGLMNSYVTAL 136

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  +  ++F +     TN N 
Sbjct: 137 GLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYREKEFTFNGIRQTNRNG 196

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T
Sbjct: 197 LLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLT 253


>gi|16079405|ref|NP_390229.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310266|ref|ZP_03592113.1| penicilin binding protein (putative D-alanyl-D-alanine
           carboxypeptidase) [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221314589|ref|ZP_03596394.1| penicilin binding protein (putative D-alanyl-D-alanine
           carboxypeptidase) [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221319512|ref|ZP_03600806.1| penicilin binding protein (putative D-alanyl-D-alanine
           carboxypeptidase) [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221323788|ref|ZP_03605082.1| penicilin binding protein (putative D-alanyl-D-alanine
           carboxypeptidase) [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|34395963|sp|P38422|DACF_BACSU RecName: Full=D-alanyl-D-alanine carboxypeptidase dacF;
           Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
           Full=Penicillin-binding protein dacF; Short=PBP; Flags:
           Precursor
 gi|1303997|dbj|BAA12652.1| DacF [Bacillus subtilis]
 gi|2634783|emb|CAB14280.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 389

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 139/251 (55%), Gaps = 20/251 (7%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           SEL  + K S+++I+ +  ++   K    R  PAS+TK+MT+ +I E L   K+ ++ ++
Sbjct: 31  SELAHEAK-SAVLIERDTGKVLYNKNSNERLAPASMTKIMTMLLIMEALDKGKIKMSDKV 89

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
             S+ AA+   S+++L+     T ++ +  +   S ND S A  EFISGSE++F   M+ 
Sbjct: 90  RTSEHAASMGGSQIFLEPGEEMTVKEMLKGIAIASGNDASVAMAEFISGSEEEFVKKMNK 149

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF--RYRNR 222
           KAK++G++NT +KN +GL ++   ++A D AI+         +  KY SI KF   Y + 
Sbjct: 150 KAKELGLKNTSFKNPTGLTEEGHYSSAYDMAIMA-------KELLKYESITKFTGTYEDY 202

Query: 223 I---------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           +         + N N+L+     +DG+KTGYT  + + +  S +  +   +AVV G  T 
Sbjct: 203 LRENTDKKFWLVNTNRLIKFYPGVDGVKTGYTGEAKYCLTASAKKGNMRAIAVVFGASTP 262

Query: 274 QERDQKALELI 284
           +ER+ +  +++
Sbjct: 263 KERNAQVTKML 273


>gi|148549880|ref|YP_001269982.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida F1]
 gi|148513938|gb|ABQ80798.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida F1]
          Length = 403

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 151/293 (51%), Gaps = 14/293 (4%)

Query: 21  SIYIQR-NIQLMGKILFLSIIMI----SMASE--LHAKPKYSS---IVIDVNK-NQMTGF 69
           +I+ +R NI  + K L L ++++    + A+E    A P+ ++   +++D +  N +   
Sbjct: 12  AIFERRMNITNLAKRLCLPVLLLITPAAFAAEQMTPAPPQLAAKSYVLMDASSGNVLVEN 71

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE 129
             DE   PASLTK+MT YI    ++  ++  +  + VS+ A     S++++K  +  T  
Sbjct: 72  NGDERLPPASLTKLMTAYIATLDIRRGQIGESDPVTVSENAWRTGGSRMFIKVGSQVTVS 131

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
             +  +I +S ND S A  E I+GSE  FA +M+  A  +GM N+ + N +GL +    +
Sbjct: 132 DLLHGIIIQSGNDASVALAEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPNPEHYS 191

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
           +A D A L   +    P +Y  +S ++F + N    N N LL +   +DG+KTG+T  +G
Sbjct: 192 SAHDMATLARAIINVDPAHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAG 251

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTH 299
           + +V S       ++AVV G  + Q R  +  +L+T    F E +T   + T 
Sbjct: 252 YCMVASAVRDGQRLIAVVFGTNSEQSRAAETQKLLTYGFRFFETQTFYQKGTE 304


>gi|300926504|ref|ZP_07142297.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           182-1]
 gi|300417465|gb|EFK00776.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           182-1]
          Length = 347

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 125/226 (55%), Gaps = 7/226 (3%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLY 119
           +T   + + R PASLTK+MT Y++   + S ++  +  + V + A A  NP     S ++
Sbjct: 9   LTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMF 68

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           LKE    +       LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++  
Sbjct: 69  LKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETV 128

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNID 238
            GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL +K  N+D
Sbjct: 129 HGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVD 188

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           G+KTG+T  +GFN++ S       ++AV+MG  +++ R+++A +L+
Sbjct: 189 GLKTGHTSGAGFNLIASAVDGQHRLIAVIMGADSAKGREEEARKLL 234


>gi|327394408|dbj|BAK11830.1| penicillin-binding protein 6B precursor DacD [Pantoea ananatis
           AJ13355]
          Length = 364

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 125/240 (52%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT 112
           S +++D    Q +T    DE R PASLTK+MT Y++   +  KK+  +  + V K A A 
Sbjct: 14  SWVLMDATTGQVLTAGNPDERRNPASLTKLMTGYVVDRAIDQKKITRDDMVTVGKDAWAA 73

Query: 113 QNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
            NP     S ++LK     +       +I  S ND   A  ++++GS+  F  LM++  +
Sbjct: 74  GNPVFKGSSLMFLKPGDKLSVRDLSRGVIIDSGNDACVALADYVAGSQDNFVKLMNHYVE 133

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           K+G+ NT ++   GL    Q ++A D A L   +    P +Y  +  +   +      N 
Sbjct: 134 KLGLTNTHFETVHGLDAPGQFSSALDMAKLSRAIIDGEPDFYAMYREKTLTWNGITQNNR 193

Query: 228 NKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N LL  N +H +DG+KTG+T  +GFNI+ S       ++AVVMG  +++ R+++A +L+ 
Sbjct: 194 NGLLWDNSLH-VDGLKTGHTETAGFNIIASNVVGQHRLIAVVMGGKSAKGREEQARKLLV 252


>gi|291618006|ref|YP_003520748.1| DacD [Pantoea ananatis LMG 20103]
 gi|291153036|gb|ADD77620.1| DacD [Pantoea ananatis LMG 20103]
          Length = 386

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 125/240 (52%), Gaps = 10/240 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT 112
           S +++D    Q +T    DE R PASLTK+MT Y++   +  KK+  +  + V K A A 
Sbjct: 36  SWVLMDATTGQVLTAGNPDERRNPASLTKLMTGYVVDRAIDQKKITRDDMVTVGKDAWAA 95

Query: 113 QNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
            NP     S ++LK     +       +I  S ND   A  ++++GS+  F  LM++  +
Sbjct: 96  GNPVFKGSSLMFLKPGDKLSVRDLSRGVIIDSGNDACVALADYVAGSQDNFVKLMNHYVE 155

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           K+G+ NT ++   GL    Q ++A D A L   +    P +Y  +  +   +      N 
Sbjct: 156 KLGLTNTHFETVHGLDAPGQFSSALDMAKLSRAIIDGEPDFYAMYREKTLTWNGITQNNR 215

Query: 228 NKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N LL  N +H +DG+KTG+T  +GFNI+ S       ++AVVMG  +++ R+++A +L+ 
Sbjct: 216 NGLLWDNSLH-VDGLKTGHTETAGFNIIASNVVGQHRLIAVVMGGKSAKGREEQARKLLV 274


>gi|270261117|ref|ZP_06189390.1| hypothetical protein SOD_a03420 [Serratia odorifera 4Rx13]
 gi|270044601|gb|EFA17692.1| hypothetical protein SOD_a03420 [Serratia odorifera 4Rx13]
          Length = 401

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/239 (33%), Positives = 132/239 (55%), Gaps = 12/239 (5%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           +++D N  + +T    D    PASLTK+M+ Y+I + +++ K+     + V K A AT N
Sbjct: 44  VLMDYNSGKILTEGNADTRLDPASLTKIMSSYVIGQAIKAGKIKPEDMVTVGKDAWATGN 103

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S +++K        +    ++ +S ND S A  ++++GS+  F  LM+N AK +
Sbjct: 104 PALRGSSLMFIKPGDQVPVMELNKGIVIQSGNDASIALADYVAGSQDSFVGLMNNYAKSL 163

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+QNT +    GL  + Q +TARD A+L   L ++ P  Y     ++F +      N N+
Sbjct: 164 GLQNTHFLTVHGLDAEGQYSTARDMALLSQALIRDVPVEYALHKEKEFTFNKIRQVNRNR 223

Query: 230 LLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDP--IVAVVMGMPTSQERDQKALELIT 285
           LL   + N+DGIKTGYT  +G N+V S    D P  +++VV+G P+ + R  ++ +L+T
Sbjct: 224 LLWSSNLNVDGIKTGYTGGAGHNLVAS--ATDGPMRLISVVLGAPSDRIRFSESEKLLT 280


>gi|70732753|ref|YP_262516.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas fluorescens Pf-5]
 gi|68347052|gb|AAY94658.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas fluorescens Pf-5]
          Length = 385

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 138/275 (50%), Gaps = 10/275 (3%)

Query: 34  ILFLSIIMISMASELHAKPKY------SSIVIDVNK-NQMTGFKQDEPRYPASLTKMMTL 86
            L + +I+   A  + A P        S +++D +  N +     D+   PASLTK+MT 
Sbjct: 11  CLLVPLIITPAAWAVEAMPSPPQLAAKSYVLMDASSGNVLVENNGDQRLPPASLTKLMTA 70

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           YI    ++  ++  N  + VS+ A     S++++K  +  T    +  +I +S ND S A
Sbjct: 71  YIATLEIRRGQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDASVA 130

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E I+GSE  FA +M+  A  +GM N+ + N +GL +    ++A D A+L   +    P
Sbjct: 131 VSEHIAGSEDAFADMMNKTATDLGMSNSHFMNPTGLPNPEHYSSAHDMAVLARAIIHEDP 190

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
            +Y  +S ++F +      N N LL +   +DG+KTG+T  +G+ +V+S       ++AV
Sbjct: 191 AHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAV 250

Query: 267 VMGMPTSQERDQKALELIT---SFLEKKTLKHQQT 298
           V G  + Q R  +  +L+T    F E +T   + T
Sbjct: 251 VFGTNSEQARAAETQKLLTYGFRFFETQTFYQKGT 285


>gi|332799334|ref|YP_004460833.1| Serine-type D-Ala-D-Ala carboxypeptidase [Tepidanaerobacter sp.
           Re1]
 gi|332697069|gb|AEE91526.1| Serine-type D-Ala-D-Ala carboxypeptidase [Tepidanaerobacter sp.
           Re1]
          Length = 388

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 141/260 (54%), Gaps = 12/260 (4%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFE 91
           +LF+ I  ++ A +L  K   S+I++D     +  F+++  E   PAS+TK+MT+ I FE
Sbjct: 18  MLFIIISPVAAAPQLDIKSP-SAILMDAGTGTIL-FEKNSHEKMEPASITKIMTMIIAFE 75

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            L+S K+ L+  + +S+ A     S+++L      T E  +  ++  SAND S A  E I
Sbjct: 76  ALESGKVSLSDIVRISERAWGTGGSQVFLAPGEEQTLETLLKCIVIASANDASMAVAEHI 135

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            GS + F  LM++KAK++GM NT + N  GL      TTA D A++   L K +P ++ +
Sbjct: 136 GGSVEGFVKLMNDKAKQLGMSNTNFVNPHGLSSPEHYTTAHDIALMSRELVK-YPLFFNW 194

Query: 212 --FSIRKFRYRNR-----IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
               I    + ++     ++ N NKLL K   +DG+KTG+   +G     + R  D  ++
Sbjct: 195 STIWIDYLEHTDKKRDATMLANTNKLLGKYEGLDGLKTGFHNKAGHCFAGTARRGDFRLI 254

Query: 265 AVVMGMPTSQERDQKALELI 284
           +VV+   TS +R +  ++L+
Sbjct: 255 SVVLNADTSSQRFEDTVKLL 274


>gi|123441794|ref|YP_001005778.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088755|emb|CAL11560.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 405

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 139/264 (52%), Gaps = 15/264 (5%)

Query: 35  LFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIF 90
           L L  +  + A++  A P   +   +++D N  ++      + R  PASLTK+M+ Y+I 
Sbjct: 27  LLLLALPYAHAADSPAAPAIDAKAYVLMDYNSGKVLAEGNSDQRLDPASLTKIMSSYVIG 86

Query: 91  EYLQSKKLHLNTQIPVSKTA------ATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           + +++ K+H +  + V K A      A +  S ++LK             ++ +S ND S
Sbjct: 87  QAIKAGKVHPDDLVTVGKDAWATGNSALRGSSLMFLKPGDQVKLSDLNKGIVIQSGNDAS 146

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  ++I+GS+  F  LM+N AK +G+ NT +    GL    Q +TA D A+LG  L ++
Sbjct: 147 IALADYIAGSQDSFVGLMNNYAKALGLNNTHFMTVHGLDAPGQYSTAHDMAVLGQALIRD 206

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDP- 262
            P  Y     ++F +      N N+LL   + N+DG+KTG+T  +G N+V S    D P 
Sbjct: 207 VPDEYALHKEKEFTFNKIRQINRNRLLWSTNLNVDGMKTGFTAGAGHNLVAS--ATDGPM 264

Query: 263 -IVAVVMGMPTSQERDQKALELIT 285
            +++VV+G P+ + R  ++ +L+T
Sbjct: 265 RLISVVLGAPSDRVRFSESEKLLT 288


>gi|167898320|ref|ZP_02485721.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 7894]
          Length = 276

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 112/205 (54%), Gaps = 4/205 (1%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK---TA 110
           S +V+D +  +  G    D  R PASLTK+MT Y+ F+ L+   L  +  + V+     +
Sbjct: 58  SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERDALRWDDTVTVAADDIAS 117

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             ++ +++YL           +  LI  SAND +    + I GS   FA +M++ A+++G
Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ + + SG+   +  +TA D +IL   L ++FP +Y + S R F Y     TN N+L
Sbjct: 178 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTS 255
           L    ++DG+KTG+T  +G+ +V +
Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVT 262


>gi|295096612|emb|CBK85702.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 403

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 135/253 (53%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADARRDPASLTKMMTSYVIGQAMKAGKFK 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 94  ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++N+ ++   GL  + Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVSALGLKNSHFQTVHGLDAEGQYSSARDMALIGQALIRDVPNEYSIYK 213

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +     TN N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 214 EKEFTFNGIRQTNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 273

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 274 FKGRETESKKLLT 286


>gi|110633932|ref|YP_674140.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium
           sp. BNC1]
 gi|110284916|gb|ABG62975.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Chelativorans
           sp. BNC1]
          Length = 382

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 10/230 (4%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYF 126
           DEP  PASL K+MT  ++   L++ ++ +  +  VS+ A     A    + ++    +  
Sbjct: 50  DEPFPPASLAKLMTAELLLNALKTGRISMQREFEVSEHAWRTGGAPSGTATMFAAVNSRV 109

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
             E  +  +I + AND      E ++GSE  FA LM+ +A+ +G+  +++ N +GL  + 
Sbjct: 110 PIEALLQGIIVQQANDGCIILAEGMAGSENAFARLMTERARALGLTRSVFVNPTGLPAEG 169

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           Q  T R+ A+L   L + +P+YY+YF    F + NR I   N++L      DG+  G+T 
Sbjct: 170 QQVTVREIALLSRHLWREYPEYYRYFGQEDFEW-NR-IRQRNRVLRLGTGADGLALGFTE 227

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ---KALELITSFLEKKTL 293
             G+ I  S+      + AV+ G+P  QER +   K LE   S  E++ L
Sbjct: 228 GQGYAIAASMERNGKRLFAVLAGIPEEQERPEETRKMLEWGFSAFERRQL 277


>gi|300816637|ref|ZP_07096858.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           107-1]
 gi|300530867|gb|EFK51929.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           107-1]
          Length = 347

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 124/226 (54%), Gaps = 7/226 (3%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLY 119
           +T   + + R PASLTK+MT Y++   + S ++  +  + V + A A  NP     S ++
Sbjct: 9   LTAGNEHQQRNPASLTKLMTGYVVDRTIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMF 68

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           LKE    +       LI  S ND   A  ++I+G +++F  +M+N A+K+ ++ T ++  
Sbjct: 69  LKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKGTHFETV 128

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNID 238
            GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL +K  N+D
Sbjct: 129 HGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVD 188

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           G+KTG+T  +GFN++ S       ++AVVMG  +++ R+++A +L+
Sbjct: 189 GLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLL 234


>gi|323170759|gb|EFZ56409.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli LT-68]
          Length = 403

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 133/253 (52%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFK 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 94  ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L +N P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRNVPNEYSIYK 213

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 214 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 273

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 274 FKGREAESKKLLT 286


>gi|187932841|ref|YP_001886556.1| penicillin-binding protein DacF [Clostridium botulinum B str.
           Eklund 17B]
 gi|187720994|gb|ACD22215.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum B
           str. Eklund 17B]
          Length = 396

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 142/283 (50%), Gaps = 33/283 (11%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   PAS+TK+MT+ +  E + + K+ L+ ++  S+ A     S + L      + E+ 
Sbjct: 65  DEKFAPASVTKIMTMLLTMEAIDNGKIKLDDKVTCSENAKKMGGSTMLLDTGEIRSVEEL 124

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +   S ND + A  E++ G+E  F  LM+ +A+++GM+NT++KN +GL     ++TA
Sbjct: 125 LKGVAIASGNDAAVALAEYLGGTESDFVGLMNKRAQELGMKNTVFKNCNGLPADGHLSTA 184

Query: 192 RDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           RD +++ I L K+ P   KY      SI + R     + NHNKL+      DG+KTG+T 
Sbjct: 185 RDISLMSIELLKH-PTILKYTGTYMDSISEGRKSPIELVNHNKLVRFFEGCDGLKTGFTN 243

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK--------------KT 292
            + + I  +       ++ V+MG PT + R++ A  L+     K              K 
Sbjct: 244 EAKYCISATATRNGVRMLTVIMGAPTYKIRNRDAGILLNHGFSKYEGKKIVSKDEDVEKV 303

Query: 293 LKHQQTHR------KDNLSSTSLKKS-------LMIKKLKRTY 322
           L  +QT R      KD+L++   K S       ++I++LK  Y
Sbjct: 304 LMDKQTDRFFMAKAKDDLTAILPKGSNGEISNKIVIEELKPEY 346


>gi|261341254|ref|ZP_05969112.1| D-alanyl-D-alanine carboxypeptidase DacA [Enterobacter cancerogenus
           ATCC 35316]
 gi|288316558|gb|EFC55496.1| D-alanyl-D-alanine carboxypeptidase DacA [Enterobacter cancerogenus
           ATCC 35316]
          Length = 403

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 135/253 (53%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADARRDPASLTKMMTSYVIGQAMKAGKFK 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 94  ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++N+ ++   GL  + Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVTALGLKNSHFQTVHGLDAEGQYSSARDMALIGQALIRDVPNEYTIYK 213

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +     TN N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 214 EKEFTFNGIRQTNRNGLLWDNSLNVDGIKTGHTEKAGYNLVASATEGQMRLISAVMGGRT 273

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 274 FKGRETESKKLLT 286


>gi|296103402|ref|YP_003613548.1| D-alanyl-D-alanine carboxypeptidase fraction A [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295057861|gb|ADF62599.1| D-alanyl-D-alanine carboxypeptidase fraction A [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 403

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 135/253 (53%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADARRDPASLTKMMTSYVIGQAMKAGKFK 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 94  ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++N+ ++   GL  + Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVSALGLKNSHFQTVHGLDAEGQYSSARDMALIGQALIRDVPNEYAIYK 213

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +     TN N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 214 EKEFTFNGIRQTNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 273

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 274 FKGRETESKKLLT 286


>gi|260773274|ref|ZP_05882190.1| D-alanyl-D-alanine carboxypeptidase [Vibrio metschnikovii CIP
           69.14]
 gi|260612413|gb|EEX37616.1| D-alanyl-D-alanine carboxypeptidase [Vibrio metschnikovii CIP
           69.14]
          Length = 347

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/213 (34%), Positives = 115/213 (53%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I + L    + L+  + +S+ A  +N    SK++++  T         
Sbjct: 20  PASLTKMMTSYVIGQELNRGNISLDDDVVISENAWAKNYPDSSKMFIEVGTSVKVRDLNK 79

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E ++GSE  F  LM+  A  + M NT + N  GL      +T  D
Sbjct: 80  GIIIQSGNDACVAMAEHVAGSEDAFVDLMNAWASSLNMTNTHFANVHGLDHPELYSTPYD 139

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A+LG  L ++ P  Y  ++ +KF Y      N N LL +K  N+DGIKTG+T N+G+++
Sbjct: 140 MALLGQALIRDVPDEYALYAEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTTNAGYSL 199

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           V+S    +  ++AVVMG      R  ++ +L++
Sbjct: 200 VSSATEGNMRLIAVVMGTKDINSRKTESKKLLS 232


>gi|253688070|ref|YP_003017260.1| Beta-lactamase [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251754648|gb|ACT12724.1| Beta-lactamase [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 401

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 122/221 (55%), Gaps = 7/221 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+M  Y+I + ++S K+    ++ V K A AT NP     S ++LK    
Sbjct: 60  DERLDPASLTKIMASYVIGQAIKSGKISPTDEVTVGKDAWATGNPALRGSSLMFLKPGDR 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
               +    ++ +S ND S A  ++++GS+  F  LM+N  K + + NT +    GL   
Sbjct: 120 IPVSELNKGIVIQSGNDASIALADYVAGSQDAFVSLMNNYVKALNLTNTHFLTVHGLDAT 179

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGY 244
            Q +TARD A+LG  L ++ P+ Y     ++F + N    N N+LL   + N+DG+KTG+
Sbjct: 180 GQYSTARDMALLGQALIRDVPEEYALHKEKEFTFNNIRQPNRNRLLWSTNLNVDGVKTGH 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           T  +G N+V S    +  +++VV+G  T   R +++ +L+T
Sbjct: 240 TNGAGHNLVASATEGNMRLISVVLGAQTDAIRFRESEKLLT 280


>gi|220926670|ref|YP_002501972.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Methylobacterium nodulans ORS 2060]
 gi|219951277|gb|ACL61669.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Methylobacterium nodulans ORS 2060]
          Length = 403

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 130/235 (55%), Gaps = 6/235 (2%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---- 110
           +I++D +   +   K  DEP  PAS+ K+MT+ +IF+ ++  +L+ +++ P+S+ A    
Sbjct: 40  AILVDADSGSVLYEKAADEPFSPASMAKLMTVEVIFDEMRKGRLNQDSEFPISENAWRRG 99

Query: 111 -ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            A    S ++ +  +       +  LI +S ND + A  E I G+E  FA +M+ +A+++
Sbjct: 100 GAGGGGSSMFAQLNSKVKLPDLLRGLIVQSGNDAAIAAAEAIGGTEDNFAQIMNRRAREL 159

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+  + ++NA+G    +Q  TARD A L I L + +P+ YK F+ R+F +      N N 
Sbjct: 160 GLTRSTFRNATGYSAPDQKVTARDLAKLAIHLIETYPEEYKLFAEREFTWNKIRQQNRNP 219

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           LL      DG+KTGY   SG+ +  S       +V VV G+ T++ER  +A +L+
Sbjct: 220 LLAMDIGADGLKTGYLEESGYGLTGSAVQNGQRLVMVVSGLKTARERAAEARKLL 274


>gi|330445206|ref|ZP_08308858.1| D-alanyl-D-alanine carboxypeptidase family protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328489397|dbj|GAA03355.1| D-alanyl-D-alanine carboxypeptidase family protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 391

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 122/225 (54%), Gaps = 5/225 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           I++D N  + + G  + E   PASLTKMMT Y+I + +++  +  +  + VSK A  +N 
Sbjct: 42  ILVDYNSGKILAGHNEYEKLAPASLTKMMTSYVIGQEIKNGNISPDDTVVVSKNAWAKNF 101

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L+             +I  S ND   A  E I+GS++ F  LM+  AK +GM+
Sbjct: 102 PGSSKMFLEVGKTVKVSDLNRGIIVDSGNDACVAMAEHIAGSQESFVDLMNGWAKNLGMK 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           +T + N  GL   +  TT  D +IL   L  + P  +K +S + F Y      N N LL 
Sbjct: 162 STHFANVHGLDRSDLYTTPYDLSILARHLISDLPNEFKIYSEKSFTYNGITQYNRNGLLW 221

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           +K  ++DG+KTG+T N+G+++V++    +  +VAVVMG  +   R
Sbjct: 222 DKSMHVDGLKTGHTDNAGYSLVSTATEGNMRLVAVVMGTASKNAR 266


>gi|303238776|ref|ZP_07325308.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio
           cellulolyticus CD2]
 gi|302593655|gb|EFL63371.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio
           cellulolyticus CD2]
          Length = 384

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 134/260 (51%), Gaps = 10/260 (3%)

Query: 36  FLSI-IMISMASELHAKPKY--------SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMT 85
           FLS+ ++I++ + +H    Y        S+I+I+ +  Q+   K  E   P AS+TK+MT
Sbjct: 9   FLSVFLLIAIFTTMHPLNIYAEFESTAGSAILIEASTGQVLYEKNSEVSMPPASITKVMT 68

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           L + FE +          + VS+ A     SK++L+  +  +    I+ +   SAND   
Sbjct: 69  LLLGFEAISKGTAKWTDLVSVSEKAWKMEGSKMFLQVGSKVSYRDIIMGISIDSANDGCI 128

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E++ GSE  F   M+ KAK+IG++N+ +KN +GL  +    TA+D  IL   L +N+
Sbjct: 129 ALAEYLCGSENAFVSAMNEKAKEIGLKNSTFKNCTGLPQEGHRLTAKDIVILSRYLIQNY 188

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           P+  +  S  +F + +    N N LL      DG+KTG+T  +G+ +  + +     ++A
Sbjct: 189 PEILEIESKTEFTFNDIRQFNRNPLLGVYEGADGLKTGWTEEAGYCLAATAKQNGIRLIA 248

Query: 266 VVMGMPTSQERDQKALELIT 285
           VV+     +ER     EL+T
Sbjct: 249 VVLNTKDEKERQIAGQELLT 268


>gi|262368687|ref|ZP_06062016.1| penicillin-binding protein 6 [Acinetobacter johnsonii SH046]
 gi|262316365|gb|EEY97403.1| penicillin-binding protein 6 [Acinetobacter johnsonii SH046]
          Length = 382

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 145/259 (55%), Gaps = 8/259 (3%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYI 88
           L+  I F + ++ S   EL+ K   S +++D    Q+   K ++E   PAS+TKMMT +I
Sbjct: 12  LVPSISFAATVL-SSPPELNNK---SYVLMDYETGQILASKNENEKLAPASMTKMMTSFI 67

Query: 89  IFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           I + L + +L  + ++ ++++A    + + S +Y+      T  + +  +I +S ND S 
Sbjct: 68  IEQKLLAGELTEDEKVRMNESAWCRGSSSESCMYVPLNGTATALEMLRGIIIQSGNDASK 127

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E I+G+E  F  +M+ +AK+IGM NT + N++G+  +   +TA+D A L   +  + 
Sbjct: 128 AMAEHIAGNEGTFVHMMNTEAKRIGMTNTSFMNSTGMPAEGHYSTAKDMATLAQHIIHDS 187

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            +YY  +S ++F +      N N LL    ++DG+KTG+T  +G+ + TS +     +++
Sbjct: 188 SKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSAKRGPMRLIS 247

Query: 266 VVMGMPTSQERDQKALELI 284
           V+ G P+ QER  +  E++
Sbjct: 248 VIFGAPSMQERATQTREIL 266


>gi|161138122|gb|ABX58032.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum brasilense]
          Length = 276

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/144 (40%), Positives = 90/144 (62%)

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E + GSE KFA +M+ KA++ GM+NT++ N++GL +  Q+TTAR  +IL   +  +  +Y
Sbjct: 1   EALGGSEAKFAEMMTRKAREXGMRNTVFXNSNGLPNMQQVTTARXFSILSRAMLSDHSRY 60

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           Y YFS R F Y  R + NHN+L+++   +DGIKTGYT  SGFN+  S       +VAVV+
Sbjct: 61  YPYFSRRAFVYGGRSLNNHNRLMSRYEGMDGIKTGYTVASGFNLAASAVRDGRRLVAVVL 120

Query: 269 GMPTSQERDQKALELITSFLEKKT 292
           G  ++  RD +   ++    +K +
Sbjct: 121 GGKSAASRDARMEAILDKAFDKPS 144


>gi|300947320|ref|ZP_07161521.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           116-1]
 gi|300453072|gb|EFK16692.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           116-1]
          Length = 347

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 125/226 (55%), Gaps = 7/226 (3%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLY 119
           +T   + + R PASLTK+MT Y++   + S ++  +  + V + A A  NP     S ++
Sbjct: 9   LTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMF 68

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           LKE    +       LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++  
Sbjct: 69  LKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETV 128

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNID 238
            GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL +K  N+D
Sbjct: 129 HGLDALGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVD 188

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           G+KTG+T  +GFN++ S       ++AV+MG  +++ R+++A +L+
Sbjct: 189 GLKTGHTSGAGFNLIASAVDGQRRLIAVIMGADSAKGREEEARKLL 234


>gi|311107988|ref|YP_003980841.1| D-alanyl-D-alanine carboxypeptidase [Achromobacter xylosoxidans A8]
 gi|310762677|gb|ADP18126.1| D-alanyl-D-alanine carboxypeptidase DacC 1 [Achromobacter
           xylosoxidans A8]
          Length = 386

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 123/216 (56%), Gaps = 9/216 (4%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP---SKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y++FE L  K+L   TQ+    T A + P   SK++L+  +  + +  + 
Sbjct: 57  PASLTKIMTAYVVFEALSKKELS-ATQLVTVSTRAWKVPAGSSKMFLEPGSKVSVDDLLR 115

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+ +S ND + A  E +SGS + F   M++ A ++G+  T + +  GL D    +TA D
Sbjct: 116 GLMIQSGNDAAIALAEAVSGSVEAFVARMNDTAARLGLHATRFASPHGLPDPETYSTASD 175

Query: 194 QAILGILLRKNFPQYYK-YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
            +IL     +++PQ YK Y S ++F +      N N+LL    ++DG+KTG+T ++G+ I
Sbjct: 176 LSILATRFIRDYPQLYKTYDSAKQFTFNKITQPNRNRLLWLDPSVDGLKTGHTESAGYCI 235

Query: 253 VTSLRYKDDP----IVAVVMGMPTSQERDQKALELI 284
           V + +  +      ++ VV+G  + + R Q++ EL+
Sbjct: 236 VATAQRPNGADQRRLITVVVGTASDKLRTQESRELL 271


>gi|28211200|ref|NP_782144.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88]
 gi|28203640|gb|AAO36081.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88]
          Length = 395

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 130/253 (51%), Gaps = 17/253 (6%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           I +  +S L  +P    I+ + N N        E   PAS+TK+MT+ I  E + S K+ 
Sbjct: 37  IQVEASSALLMEPNSGKIIYEKNAN--------EKLPPASVTKIMTMLIAMEAVDSGKIK 88

Query: 100 LNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           L  +I VS+ A        S + L      T E+ +  +   S ND +TA  E++ GSE+
Sbjct: 89  LTDKITVSENAKKNGQGGNSSMLLDTGEIRTVEEILKGIAIASGNDAATAMAEYLDGSEE 148

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF---- 212
            F   M+++AK +GM+NT +KN SGL ++  ITTA D A++   L K+ P   KY     
Sbjct: 149 AFVKTMNDRAKALGMKNTNFKNCSGLPEEGHITTAYDIALMSKELLKH-PTILKYTGTYM 207

Query: 213 -SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
            +I + R     + NHNKL+      DG+KTGYT  + + I  +       ++ V+MG P
Sbjct: 208 ETISEGRKSPIGLVNHNKLVRFFKGCDGLKTGYTSEAKYCISATAVRDGVRVLTVIMGAP 267

Query: 272 TSQERDQKALELI 284
             + R+++A  L+
Sbjct: 268 NYKIRNKEASNLM 280


>gi|209518827|ref|ZP_03267640.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. H160]
 gi|209500712|gb|EEA00755.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. H160]
          Length = 273

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 9/222 (4%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTT 128
           D  R PASLTK+MT YI  + L+   +  + ++ V+     +   + +++YL        
Sbjct: 17  DAKRQPASLTKLMTAYIALDALKHGSVRWDEKVAVNTADIGEVGGDEARMYLVPGQQVPV 76

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
              +  LI  SAND +      + G+   F  LM++ A+K+GM +T +   SG+      
Sbjct: 77  RDLVQGLIAASANDAALVLARRVGGTPAGFEQLMNDIARKLGMAHTHFSTPSGITTPGNY 136

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
           +TARD + L + L K+FPQYY + S + F Y      N N LL K  ++DG+KTG+T+ +
Sbjct: 137 STARDLSTLAMRLTKDFPQYYTFSSEQHFVYGKFEKRNKNWLLGKDPSVDGMKTGHTQAA 196

Query: 249 GFNIV-TSLRYKDDP-----IVAVVMGMPTSQERDQKALELI 284
           G+ IV T+ R +  P     + AV++G PT+ +R   A  L+
Sbjct: 197 GYCIVATAKRKQTAPPMMRRVFAVILGAPTANDRITGAGSLL 238


>gi|84387870|ref|ZP_00990884.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus
           12B01]
 gi|84377216|gb|EAP94085.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus
           12B01]
          Length = 373

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 128/236 (54%), Gaps = 9/236 (3%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           ++ID N   +   K    +  PASLTK+MT Y+  + +Q   +  + Q+ +S+ A  +N 
Sbjct: 25  VLIDFNSGDVLVEKNAHTKLNPASLTKLMTSYVAGQEMQRGNISADDQVRISENAWAKNF 84

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++++  T          LI +S ND S A  E ++GS+  F  LM++ A  + ++
Sbjct: 85  PDSSKMFIEVNTDVAMMDLYRGLIIQSGNDASVAIAEHVAGSQDAFVDLMNSWATSLKLE 144

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK--- 229
           NT + NA GL   +  +T  D A+LG  + ++ P  Y  +S R F Y    IT HN+   
Sbjct: 145 NTHFANAHGLDADDLYSTPYDIALLGRAIIRDLPDVYGLYSERSFSYNG--ITQHNRNGL 202

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           L ++   +DG+KTGYT  +G+++ +S    +  ++AVVMG  + + R+  + +L++
Sbjct: 203 LRDRSLTVDGMKTGYTSGAGYSLASSATQGEMRLIAVVMGASSVKSRESDSKQLLS 258


>gi|313500782|gb|ADR62148.1| DacA [Pseudomonas putida BIRD-1]
          Length = 386

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 145/286 (50%), Gaps = 13/286 (4%)

Query: 27  NIQLMGKILFLSIIMI----SMASE--LHAKPKYSS---IVIDVNK-NQMTGFKQDEPRY 76
           NI  + K L L ++++    + A+E    A P+ ++   +++D +  N +     DE   
Sbjct: 2   NITNLAKRLCLPVLLLITPAAFAAEQMTPAPPQLAAKSYVLMDASSGNVLVENNGDERLP 61

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT YI    ++  ++  +  + VS+ A     S++++K  +  T    +  +I
Sbjct: 62  PASLTKLMTAYIATLDIRRGQIGESDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGII 121

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E I+GSE  FA +M+  A  +GM N+ + N +GL      ++A D A 
Sbjct: 122 IQSGNDASVALAEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPHPEHYSSAHDMAT 181

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   +    P +Y  +S ++F + N    N N LL +   +DG+KTG+T  +G+ +V S 
Sbjct: 182 LARAIINVDPAHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVASA 241

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTH 299
                 ++AVV G  + Q R  +  +L+T    F E +T   + T 
Sbjct: 242 VRDGQRLIAVVFGTNSEQSRAAETQKLLTYGFRFFETQTFYQKGTE 287


>gi|26991483|ref|NP_746908.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida
           KT2440]
 gi|24986562|gb|AAN70372.1|AE016679_4 D-alanyl-D-alanine carboxypeptidase [Pseudomonas putida KT2440]
          Length = 386

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 145/286 (50%), Gaps = 13/286 (4%)

Query: 27  NIQLMGKILFLSIIMI----SMASE--LHAKPKYSS---IVIDVNK-NQMTGFKQDEPRY 76
           NI  + K L L ++++    + A+E    A P+ ++   +++D +  N +     DE   
Sbjct: 2   NITNLAKRLCLPVLLLITPAAFAAEQMTPAPPQLAAKSYVLMDASSGNVLVENNGDERLP 61

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT YI    ++  ++  +  + VS+ A     S++++K  +  T    +  +I
Sbjct: 62  PASLTKLMTAYIATLDIRRGQIGESDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGII 121

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E I+GSE  FA +M+  A  +GM N+ + N +GL      ++A D A 
Sbjct: 122 IQSGNDASVALAEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPHPEHYSSAHDMAT 181

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   +    P +Y  +S ++F + N    N N LL +   +DG+KTG+T  +G+ +V S 
Sbjct: 182 LARAIINVDPAHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVASA 241

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTH 299
                 ++AVV G  + Q R  +  +L+T    F E +T   + T 
Sbjct: 242 VRDGQRLIAVVFGTNSEQSRAAETQKLLTYGFRFFETQTFYQKGTE 287


>gi|218531093|ref|YP_002421909.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           chloromethanicum CM4]
 gi|218523396|gb|ACK83981.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           chloromethanicum CM4]
          Length = 418

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 128/236 (54%), Gaps = 8/236 (3%)

Query: 56  SIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           +I+ID +   +  F++  DEP  PAS+ K+MT  I+F  ++  +L ++T+  V++ A   
Sbjct: 42  AILIDADSGSVL-FEKAADEPFSPASMAKLMTAEIVFRAIKEGRLSMDTEFTVTEDAWRR 100

Query: 111 --ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
             A    S ++ +  +       +  LI +S ND +    E ++G+E  FA +M+ +AK+
Sbjct: 101 GGAGGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDAAITIAENMAGTEDAFAGMMNQRAKE 160

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           IG+  + ++NA+G    +Q  TARD A +   L   +P++YK +S R+F +      N N
Sbjct: 161 IGLTRSTFRNATGYSAPDQKVTARDMARIAQYLIDTYPEFYKIYSEREFTWNKIKQQNRN 220

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            LL      DG+KTGY   SG+ +  S       ++ VV G+ T+++R  +A +++
Sbjct: 221 PLLTLDIGADGLKTGYLEESGYALTGSAVQNGQRLIMVVSGLKTARDRAAEARKMM 276


>gi|283834062|ref|ZP_06353803.1| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC
           29220]
 gi|291070205|gb|EFE08314.1| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC
           29220]
          Length = 403

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 133/253 (52%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADSRRDPASLTKMMTSYVIGQAMKAGKFK 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 94  ETDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMAMIGQALIRDVPNEYSIYK 213

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 214 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 273

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 274 YKGRETESKKLLT 286


>gi|218676325|ref|YP_002395144.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus
           LGP32]
 gi|218324593|emb|CAV26124.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus
           LGP32]
          Length = 394

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 143/277 (51%), Gaps = 12/277 (4%)

Query: 16  TYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR 75
           + P  S++I  N  ++      +  ++     L AK     ++ID N   +   K    +
Sbjct: 8   SLPLLSMFIVSNAAIVANTAVAAPSIVPSPPSLGAK---GYVLIDFNSGDVLVEKNAHTK 64

Query: 76  Y-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQG 131
             PASLTK+MT Y+  + ++   +  + Q+ +S+ A  +N    SK++++  T       
Sbjct: 65  LNPASLTKLMTSYVAGQEMKRGNISADDQVRISENAWAKNFPDSSKMFIEVNTDVAMMDL 124

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
              LI +S ND S A  E ++GS+  F  LM++ A  + ++NT + NA GL   +  +T 
Sbjct: 125 YRGLIIQSGNDASVAIAEHVAGSQDAFVDLMNSWAASLKLENTHFANAHGLDADDLYSTP 184

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK---LLNKMHNIDGIKTGYTRNS 248
            D A+LG  + ++ P  Y  +S R F Y    IT HN+   L ++   +DG+KTGYT  +
Sbjct: 185 YDIALLGRAIIRDLPDVYGLYSERSFSYNK--ITQHNRNGLLRDRSLTVDGMKTGYTSGA 242

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           G+++ +S    +  ++AVVMG  + + R+  + +L++
Sbjct: 243 GYSLASSATQGEMRLIAVVMGASSVKSRESDSKQLLS 279


>gi|237732061|ref|ZP_04562542.1| DacD [Citrobacter sp. 30_2]
 gi|226907600|gb|EEH93518.1| DacD [Citrobacter sp. 30_2]
          Length = 421

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 126/236 (53%), Gaps = 8/236 (3%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           +++D    Q +T   + + R PASLTK+MT Y++   + SK++     + V + A A  N
Sbjct: 73  VLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSKRISPTDIVTVGRDAWAKDN 132

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S ++LKE    +       LI  S ND   A  ++I+G + +F  +M+N  +K+
Sbjct: 133 PVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNNYVQKL 192

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
            +++T ++   GL    Q ++A D A+L   +    P +Y  +S +   +      N N 
Sbjct: 193 NLRDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPDFYHMYSEKSLTWNGITQQNRNG 252

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R+ +A +L+
Sbjct: 253 LLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAESAKGREDQARKLL 308


>gi|218549792|ref|YP_002383583.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia
           fergusonii ATCC 35469]
 gi|218357333|emb|CAQ89970.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia fergusonii ATCC 35469]
 gi|324114754|gb|EGC08722.1| D-alanyl-D-alanine carboxypeptidase [Escherichia fergusonii B253]
 gi|325498188|gb|EGC96047.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia
           fergusonii ECD227]
          Length = 403

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 135/253 (53%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI  A ++ A+   + I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGAPQIDAE---AWILIDYNSGKVLAEQNADTRRDPASLTKMMTSYVIGQAMKAGKFK 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A AT NP     S ++LK        Q I  +  +S ND   A  ++ +G
Sbjct: 94  ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYAAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL  + Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVNALGLKNTHFETVHGLDAEGQYSSARDMALIGQALIRDVPNEYAIYK 213

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 214 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTNQAGYNLVASATEGQMRLISAVMGGRT 273

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 274 FKGREAESKKLLT 286


>gi|153810795|ref|ZP_01963463.1| hypothetical protein RUMOBE_01179 [Ruminococcus obeum ATCC 29174]
 gi|149833191|gb|EDM88273.1| hypothetical protein RUMOBE_01179 [Ruminococcus obeum ATCC 29174]
          Length = 422

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 138/273 (50%), Gaps = 20/273 (7%)

Query: 55  SSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+++++    Q    K +D  R PAS+TK+MTL +IF++L +  + L   +  S  A + 
Sbjct: 70  SAVLMEAETGQFVYAKDKDTRRSPASVTKIMTLILIFDHLHAGDISLTDPVTTSAHAKSM 129

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+E    T E  I  ++  S ND S A  EFISGSE++F   M+ +A ++GM+N
Sbjct: 130 GGSQVFLEEGEIQTVETLIKCIVIASGNDASVAMAEFISGSEQEFVAQMNLRADRLGMKN 189

Query: 174 TIYKNASGLHDKNQ-ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII-------- 224
           T + +  GL D ++  TTA D AI+   L   +P+   Y SI    +   II        
Sbjct: 190 THFIDCCGLTDSDEHYTTANDIAIMSRELIVKYPKILDYSSI----WMETIIHETSQGIK 245

Query: 225 ----TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
               TN N+L+       G+KTG T  +GF +  +       +++VVM  P  + R + A
Sbjct: 246 EFGLTNTNRLIRTYPGCRGLKTGSTSKAGFCLSATAERNSLKLISVVMAAPDYKARLKDA 305

Query: 281 LELITSFLEKKTLKHQQTHRKDNLSSTSLKKSL 313
             L+     + ++    T   ++L +  +K+ L
Sbjct: 306 AALLDYGFSRCSIYEDNT--PESLPAIPVKRGL 336


>gi|154500121|ref|ZP_02038159.1| hypothetical protein BACCAP_03781 [Bacteroides capillosus ATCC
           29799]
 gi|150271211|gb|EDM98480.1| hypothetical protein BACCAP_03781 [Bacteroides capillosus ATCC
           29799]
          Length = 383

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 115/210 (54%), Gaps = 2/210 (0%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MTL ++ E + S ++ L+  + +S  A +   S+++LKE    T    + A+ 
Sbjct: 60  PASVTKIMTLLLVMEAVDSGRISLDQTVTISAHAVSMGGSQIWLKEGEQMTVHDLLKAVA 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             SAND + A  E ++GSE+ F  LM+ +A ++GM +T + N +GL     +T+A D A+
Sbjct: 120 VVSANDGAVALAELVAGSEEGFVALMNQRAAELGMADTTFVNCTGLPAAGHLTSAHDIAL 179

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRI--ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
           +   L  N P   +Y +I     R+    +TN NKL+       G+KTG T ++ + +  
Sbjct: 180 MSRELILNHPSIREYTTIWMDSLRDGAFQLTNTNKLIRFYDGATGLKTGSTDSALYCLSA 239

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +       ++AVV+  PTSQ+R   A  L+
Sbjct: 240 TAERGGMELIAVVLKSPTSQDRFDAARALL 269


>gi|154502522|ref|ZP_02039582.1| hypothetical protein RUMGNA_00335 [Ruminococcus gnavus ATCC 29149]
 gi|153796918|gb|EDN79338.1| hypothetical protein RUMGNA_00335 [Ruminococcus gnavus ATCC 29149]
          Length = 401

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 124/225 (55%), Gaps = 16/225 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D  R PAS+TK+MT+ +IF+ L+  K+ L  ++  S+ AA+   S+++L+     + +  
Sbjct: 68  DTRRAPASVTKIMTMLLIFDALEDGKIALEDEVSTSEYAASMGGSQVFLEPGETQSVDTM 127

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +   SAND  TA  E+I+GSE+ F  +M+ +A  +GM+NT ++N +GL  +  +TTA
Sbjct: 128 LKCISVASANDACTAMAEYIAGSEEAFVKMMNERAAGLGMKNTTFQNCNGLDTEGHLTTA 187

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRI------------ITNHNKLLNKMHNIDG 239
           RD A++   L + +P+ + Y  I    + + I            ++N NKL+ +     G
Sbjct: 188 RDIALMSRELIEKYPKIHDYCMI----WMDTITHTTKKGTSEFGLSNTNKLVRQYPYATG 243

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +KTG T  + F +  +       ++AV++    S++R Q A +L+
Sbjct: 244 LKTGSTDEAKFCVSATAEKDGMELIAVILSGENSKQRFQDATKLL 288


>gi|220931542|ref|YP_002508450.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halothermothrix orenii H
           168]
 gi|219992852|gb|ACL69455.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halothermothrix orenii H
           168]
          Length = 397

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/216 (33%), Positives = 120/216 (55%), Gaps = 8/216 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ ++ E L+  +  L   I VS+ AA+   S++YL+     T E  + A+ 
Sbjct: 64  PASMTKIMTMLLVMEALEDGRASLRDSIIVSERAASMGGSQVYLEPGEEMTLEDLMKAIA 123

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-----KNQITTA 191
             SAND   A  E++ G+E+ F   M+ KA+++G +NT + N +GL       +   T+A
Sbjct: 124 IASANDACVAVAEYLYGTEEDFVKKMNEKARELGCKNTYFYNTNGLPPGDPSVEGNYTSA 183

Query: 192 RDQAILGILLRKNFPQYYKYFS--IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
            D AI+   L K +P+  K+ S  I   R    ++ N N+L+     +DGIKTGYT  + 
Sbjct: 184 YDLAIMSRELLK-YPEVLKWTSTWIDYLRDGEFVLNNTNRLVRHYKGVDGIKTGYTEEAK 242

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           F + T+        +AV+MG  TS+ R ++A +L++
Sbjct: 243 FCVATTAARNGIRFIAVIMGADTSKARFKEAAQLLS 278


>gi|77461187|ref|YP_350694.1| penicillin-binding protein 6 [Pseudomonas fluorescens Pf0-1]
 gi|77385190|gb|ABA76703.1| putative cell division-related protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 385

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 133/265 (50%), Gaps = 8/265 (3%)

Query: 43  SMASELHAKPKY----SSIVIDVNK-NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKK 97
           + A+E+   P      S +++D N  N +     D+   PASLTK+MT YI    ++  +
Sbjct: 22  AFAAEMMPSPPQLAAKSYVLMDANSGNVLVENNGDQRLPPASLTKLMTAYIATLEIRRGQ 81

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           +  N  + VS+ A     S++++K  +  T    +  +I +S ND S A  E I+GSE  
Sbjct: 82  IGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAVAEHIAGSEDA 141

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           FA LM+     +GM NT + N +GL +    ++A D AIL   +    P +Y  +S ++F
Sbjct: 142 FADLMNKTVADLGMTNTHFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQKEF 201

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
            +      N N LL +   +DG+KTG+T  +G+ +V+S       ++AVV G  +   R 
Sbjct: 202 FWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEVARA 261

Query: 278 QKALELIT---SFLEKKTLKHQQTH 299
            +  +L+T    F E +T   + T 
Sbjct: 262 AETQKLLTYGFRFFETQTFYQKGTE 286


>gi|212638842|ref|YP_002315362.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus
           WK1]
 gi|212560322|gb|ACJ33377.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus
           WK1]
          Length = 387

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 126/233 (54%), Gaps = 17/233 (7%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           EP  PAS+TK+MT+ +I E +   KL L+ ++  S+ AA+   S+++L+     T +  +
Sbjct: 56  EPLPPASMTKIMTMLLIMEAIDQGKLKLDERVRASEYAASMGGSQIFLEPGEEMTVDDLL 115

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             +   S ND S A  E I+GSE+ F  LM+ KA+++G+++T ++N +GL  KN  +TA 
Sbjct: 116 KGIAIGSGNDASVALAERIAGSEEAFVHLMNEKARQLGLKHTAFENTTGLPAKNHYSTAY 175

Query: 193 DQAILGILLRK---------NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTG 243
           D A++   L K          +  Y +  + +KF      + N N+L+     +DG+KTG
Sbjct: 176 DMAMMAKELLKYDLITKYTGTYEDYLRENTDKKF-----WLVNTNRLVKFYPGVDGLKTG 230

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ---KALELITSFLEKKTL 293
           YT  + + +  + +  +  ++AVV G PT + R+    K L+   S  E K L
Sbjct: 231 YTSEAKYCLTATAKKGNMRVIAVVFGAPTPKARNAQITKMLDYAFSHYETKPL 283


>gi|240139670|ref|YP_002964147.1| putative penicillin binding protein,
           beta-lactamase/transpeptidase-like superfamily
           [Methylobacterium extorquens AM1]
 gi|240009644|gb|ACS40870.1| putative penicillin binding protein,
           beta-lactamase/transpeptidase-like superfamily
           [Methylobacterium extorquens AM1]
          Length = 403

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 128/236 (54%), Gaps = 8/236 (3%)

Query: 56  SIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           +I+ID +   +  F++  DEP  PAS+ K+MT  I+F  ++  +L ++T+  V++ A   
Sbjct: 27  AILIDADSGSVL-FEKAADEPFSPASMAKLMTAEIVFRAIKEGRLSMDTEFTVTEDAWRR 85

Query: 111 --ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
             A    S ++ +  +       +  LI +S ND +    E ++G+E  FA +M+ +AK+
Sbjct: 86  GGAGGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDAAITIAENMAGTEDAFAGMMNQRAKE 145

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           IG+  + ++NA+G    +Q  TARD A +   L   +P++YK +S R+F +      N N
Sbjct: 146 IGLTRSTFRNATGYSAPDQKVTARDMARIAQYLIDTYPEFYKIYSEREFTWNKIKQQNRN 205

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            LL      DG+KTGY   SG+ +  S       ++ VV G+ T+++R  +A +++
Sbjct: 206 PLLTLDIGADGLKTGYLEESGYALTGSAVQNGQRLIMVVSGLKTARDRAAEARKMM 261


>gi|237730616|ref|ZP_04561097.1| D-alanyl-D-alanine carboxypeptidase fraction A [Citrobacter sp.
           30_2]
 gi|226906155|gb|EEH92073.1| D-alanyl-D-alanine carboxypeptidase fraction A [Citrobacter sp.
           30_2]
          Length = 403

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 133/253 (52%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADTRRDPASLTKMMTSYVIGQAMKAGKFK 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 94  ETDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMAMIGQALIRDVPNEYSIYK 213

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 214 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 273

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 274 YKGRETESKKLLT 286


>gi|323484906|ref|ZP_08090261.1| hypothetical protein HMPREF9474_02012 [Clostridium symbiosum
           WAL-14163]
 gi|323693651|ref|ZP_08107850.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum
           WAL-14673]
 gi|323401787|gb|EGA94130.1| hypothetical protein HMPREF9474_02012 [Clostridium symbiosum
           WAL-14163]
 gi|323502265|gb|EGB18128.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum
           WAL-14673]
          Length = 404

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 11/224 (4%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE R PAS+TK+MTL +IF+ L+S K+HL+ ++  S  A +   S+++L+E    T E  
Sbjct: 68  DEARNPASVTKIMTLLLIFDALKSGKIHLDDEVVTSAHAKSMGGSQVFLEEGEIQTVETL 127

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-NQITT 190
           I  ++  S ND S A  E+I G E  F  +M+ +AK +GM+N  +++  GL D      +
Sbjct: 128 IKCIVIASGNDASVAMAEYIGGDEATFVKMMNERAKGLGMENANFEDCCGLTDSTTHAMS 187

Query: 191 ARDQAILGILLRKNFPQYYKYFSIR--------KFRYRNRIITNHNKLLNKMHN--IDGI 240
           ARD A++   L   +P+ + Y +I         K   +   ++N NKLL    N  + G+
Sbjct: 188 ARDIALMTKELITKYPEIFNYSTIWMENITHVTKQGTKEFGLSNTNKLLKMATNFEVTGL 247

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           KTG T  + + +  + R     ++AV++  P  + R   AL L+
Sbjct: 248 KTGSTSLAKYCLSATARKDGVELIAVILAAPDFKARFGDALTLL 291


>gi|306840479|ref|ZP_07473238.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO2]
 gi|306289494|gb|EFM60712.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO2]
          Length = 396

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 117/218 (53%), Gaps = 5/218 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYF 126
           D+P  PASL K+MT  ++FE L+  +  L T  PVS+ A     A    S ++ + K+  
Sbjct: 59  DKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEYAWRTGGAPSGTSTMFARIKSTP 118

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           T    +  +I +SAND +    E ++GSE+ FA  M+ +AK++G+ ++ + N++GL    
Sbjct: 119 TVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQRAKELGLSSSKFVNSTGLPAAG 178

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           Q+ T  D   L   +    P+YY+Y++   + + N    N N LL      DG+ TG+T 
Sbjct: 179 QVVTLEDLLNLARHIHAAHPEYYRYYAQPAYTWNNITQRNRNPLLRLEVGADGMGTGFTE 238

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            SG+ +V S       +   + G+ + +ER+++A +LI
Sbjct: 239 ASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLI 276


>gi|296332281|ref|ZP_06874743.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674982|ref|YP_003866654.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150595|gb|EFG91482.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413226|gb|ADM38345.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 389

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 139/251 (55%), Gaps = 20/251 (7%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           SEL  + K S+++I+ +  ++   K    R  PAS+TK+MT+ +I E L   K+ ++ ++
Sbjct: 31  SELAHEAK-SAVLIERDTGKVLYNKNSNERLAPASMTKIMTMLLIMEALDEGKIKMSDKV 89

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
             S+ AA+   S+++L+     T ++ +  +   S ND S A  EFISGSE++F   M+ 
Sbjct: 90  RTSEHAASMGGSQIFLEPGEEMTVKEMLKGIAIASGNDASVAMAEFISGSEEEFVKKMNK 149

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF--RYRNR 222
           KA+++G++NT +KN +GL ++   ++A D AI+         +  KY SI KF   Y + 
Sbjct: 150 KARELGLKNTSFKNPTGLTEEGHFSSAYDMAIMA-------KELLKYESITKFTGTYEDY 202

Query: 223 I---------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           +         + N N+L+     +DG+KTGYT  + + +  S +  +   +AVV G  T 
Sbjct: 203 LRENTDKKFWLVNTNRLIKFYPGVDGVKTGYTGEAKYCLTASAKKGNMRAIAVVFGASTP 262

Query: 274 QERDQKALELI 284
           ++R+ +  +++
Sbjct: 263 KDRNAQVTKML 273


>gi|254719069|ref|ZP_05180880.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
 gi|265984060|ref|ZP_06096795.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
 gi|306838351|ref|ZP_07471196.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. NF 2653]
 gi|264662652|gb|EEZ32913.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
 gi|306406491|gb|EFM62725.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. NF 2653]
          Length = 396

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 117/218 (53%), Gaps = 5/218 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYF 126
           D+P  PASL K+MT  ++FE L+  +  L T  PVS+ A     A    S ++ + K+  
Sbjct: 59  DKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEYAWRTGGAPSGTSTMFARIKSTP 118

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           T    +  +I +SAND +    E ++GSE+ FA  M+ +AK++G+ ++ + N++GL    
Sbjct: 119 TVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQRAKELGLSSSKFVNSTGLPAAG 178

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           Q+ T  D   L   +    P+YY+Y++   + + N    N N LL      DG+ TG+T 
Sbjct: 179 QVVTLEDLLNLARHIHAAHPEYYRYYAQPAYTWNNITQRNRNPLLRLEVGADGMGTGFTE 238

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            SG+ +V S       +   + G+ + +ER+++A +LI
Sbjct: 239 ASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLI 276


>gi|238918925|ref|YP_002932439.1| D-alanyl-D-alanine carboxypeptidase DacD [Edwardsiella ictaluri
           93-146]
 gi|238868493|gb|ACR68204.1| D-alanyl-D-alanine carboxypeptidase DacD [Edwardsiella ictaluri
           93-146]
          Length = 387

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 129/239 (53%), Gaps = 9/239 (3%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT 112
           S +++D    Q +     D  R PASLTK+MT Y++   L   ++ LN ++ +   A AT
Sbjct: 35  SWVLMDAQTGQILAAGNPDARRNPASLTKLMTNYVVERALDQGRIGLNDRVSIGDDAWAT 94

Query: 113 QNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
           +NP     S ++LK   + T    I  +I  S ND   A  +++SG +  F   M+    
Sbjct: 95  RNPLFKGSSLMFLKPGDHATVSDLIRGIIIDSGNDACVALSDYVSGDQADFVRQMNAYVN 154

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
            + +QNT ++   GL    Q ++ARD A+L   +  +   YY +++ +   +      N 
Sbjct: 155 ALHLQNTHFETVHGLDAPGQYSSARDLALLARAIITHEQPYYHFYAEKSLSWNGVTQNNR 214

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIV-TSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N LL ++  ++DG+KTG+T ++GFN+V TS+  +   ++AVVMG  +S+ R+ +A +L+
Sbjct: 215 NGLLWDQDLHVDGMKTGHTASAGFNLVATSVDARGQRLIAVVMGADSSRGREVQAKKLL 273


>gi|304316784|ref|YP_003851929.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778286|gb|ADL68845.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 381

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/246 (33%), Positives = 136/246 (55%), Gaps = 5/246 (2%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           I+ A     K K S+I++D +  ++   K   E   PAS+TK+MT+ ++ E L S K+  
Sbjct: 23  IAYADNFDLKSK-SAILMDASTGKVLYEKNSHEELPPASVTKVMTMLLVMEALDSGKIKT 81

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
             ++  S+ A     +++YL+     T +  + ++   SAND S A  E+ISGSE+KF  
Sbjct: 82  TDKVVTSEHAFDMGGTQIYLEVGEEMTVDDLLKSVAMNSANDASVALAEYISGSEEKFVE 141

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
            M+ +AK++G +NT +KNASGL +K+  T+  D A++   L K+    +KY + +    R
Sbjct: 142 EMNKRAKELGAKNTNFKNASGLPEKDHYTSVYDIALISRELVKH-KGIFKYLTDKIDSVR 200

Query: 221 NR--IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           N    + N NKLL +    DGIKTG T  + + +  + +  D   +AV+ G P S  R +
Sbjct: 201 NGKFSLANTNKLLWRYQGADGIKTGSTSEALYCLSATAKRGDTRFIAVIFGAPDSNTRFK 260

Query: 279 KALELI 284
           +A +L+
Sbjct: 261 EASKLL 266


>gi|210615757|ref|ZP_03290738.1| hypothetical protein CLONEX_02956 [Clostridium nexile DSM 1787]
 gi|210150093|gb|EEA81102.1| hypothetical protein CLONEX_02956 [Clostridium nexile DSM 1787]
          Length = 401

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 130/239 (54%), Gaps = 9/239 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+++++V+  ++   K  DE   PAS+TK+MTL +IF+ L+ +K+ L   + VS+ AA+ 
Sbjct: 50  SAVLMEVSTGKVIYEKAADEQLPPASVTKVMTLLLIFDALEDEKIKLTDIVSVSEYAASM 109

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+     T +  I  +   SAND   A  E I GSE++F   M+ +AK++GM++
Sbjct: 110 GGSQVFLEPGETQTVDTMIKCIAVASANDACVAMAEHIWGSEEEFVAKMNARAKELGMEH 169

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--------IT 225
           T + N +GL     +TTARD A++   L   +P+ + Y +I      +          + 
Sbjct: 170 TNFLNCNGLDADGHVTTARDIALMSRELITRYPKIHDYSTIWMENITHTTKKGTTEFGLA 229

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N NKL+ +     G+KTG T  + F +  + +  D  ++AV+M  P  + R + A  L+
Sbjct: 230 NTNKLIRQYQYATGLKTGSTSKAKFCLSATAKKDDLELIAVIMAAPDPKARFKDATTLL 288


>gi|146310825|ref|YP_001175899.1| D-alanyl-D-alanine carboxypeptidase fraction A [Enterobacter sp.
           638]
 gi|145317701|gb|ABP59848.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Enterobacter sp. 638]
          Length = 403

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 133/253 (52%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  + +     D  R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEMNADSRRDPASLTKMMTSYVIGQAMKAGKFK 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 94  ETDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++N+ ++   GL  + Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVSALGLKNSHFQTVHGLDAEGQYSSARDMALIGQALIRDVPNEYTIYK 213

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +     TN N LL +    +DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 214 EKEFTFNGIRQTNRNGLLWDNSLKVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 273

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 274 FKGRETESKKLLT 286


>gi|294635241|ref|ZP_06713743.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC
           23685]
 gi|291091358|gb|EFE23919.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC
           23685]
          Length = 387

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 130/244 (53%), Gaps = 19/244 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
           S +++D    Q+    Q  P   R PASLTK+MT Y++   L   ++ LN  +P+   A 
Sbjct: 35  SWVLMDAQTGQI--LAQGNPDARRNPASLTKLMTNYVVERALDQGRIGLNDPVPIGNDAW 92

Query: 111 ATQNPS-----KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           AT+NPS      ++LK     T    I  +I  S ND   A  +++SG +  F  LM+  
Sbjct: 93  ATRNPSFKGSSLMFLKPGDKATVSDLIRGIIIDSGNDACVALADYVSGDQAGFVRLMNGY 152

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
            +++ +QNT ++   GL    Q ++ARD A L   +  +   YY +++ +   +      
Sbjct: 153 VQQLHLQNTHFETVHGLDAPGQYSSARDLAQLARAIILHEQPYYHFYAQKSLSWNGVTQN 212

Query: 226 NHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP----IVAVVMGMPTSQERDQKA 280
           N N LL ++  ++DG+KTG+T ++GFN+V S     DP    ++AVVMG  +S+ R+ +A
Sbjct: 213 NRNGLLWDQDLHVDGMKTGHTASAGFNLVAS---SIDPHGQRLIAVVMGADSSRGREVQA 269

Query: 281 LELI 284
            +L+
Sbjct: 270 KKLL 273


>gi|163852334|ref|YP_001640377.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           extorquens PA1]
 gi|163663939|gb|ABY31306.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           extorquens PA1]
          Length = 418

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 128/236 (54%), Gaps = 8/236 (3%)

Query: 56  SIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           +I+ID +   +  F++  DEP  PAS+ K+MT  I+F  ++  +L ++T+  V++ A   
Sbjct: 42  AILIDADSGSVL-FEKAADEPFSPASMAKLMTAEIVFRAIKEGRLSMDTEFTVTEDAWRR 100

Query: 111 --ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
             A    S ++ +  +       +  LI +S ND +    E ++G+E  FA +M+ +AK+
Sbjct: 101 GGAGGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDAAITIAENMAGTEDAFAGMMNQRAKE 160

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           IG+  + ++NA+G    +Q  TARD A +   L   +P++YK +S R+F +      N N
Sbjct: 161 IGLTRSTFRNATGYSAPDQKVTARDMARIAQHLIDTYPEFYKIYSEREFTWNKIKQQNRN 220

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            LL      DG+KTGY   SG+ +  S       ++ VV G+ T+++R  +A +++
Sbjct: 221 PLLTLDIGADGLKTGYLEESGYALTGSAVQNGQRLIMVVSGLKTARDRAAEARKMM 276


>gi|269102681|ref|ZP_06155378.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162579|gb|EEZ41075.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 348

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 117/212 (55%), Gaps = 4/212 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + ++   +  +  + +S+ A  +N    SK++++            
Sbjct: 20  PASLTKLMTSYVAGQEMKQGNISKDDVVVISRNAWARNFHDSSKMFIEVGAEVPMMDLFR 79

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GS+  F  LM++ AKK+ M N+ + NA GL   +  +T  D
Sbjct: 80  GLIIQSGNDASVAIAEHVAGSQDAFVGLMNSWAKKLNMNNSRFANAHGLDHDDLYSTPYD 139

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A+LG  L ++ P  Y  +S + F Y N    N N LL +   N+DG+KTGYT  +G+++
Sbjct: 140 IALLGQALIRDLPDIYPLYSEKSFTYNNITQRNRNGLLHDSSMNVDGMKTGYTGGAGYSL 199

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +S    D  ++AVVMG  + + R  ++ +L+
Sbjct: 200 ASSATEGDMRLIAVVMGTKSPKIRQAESKQLL 231


>gi|330887942|gb|EGH20603.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 401

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 129/246 (52%), Gaps = 4/246 (1%)

Query: 41  MISMASELHAKPKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           M   A +L AK   S +++D  + N +     D+   PASLTK+MT YI    ++  ++ 
Sbjct: 28  MTPAAPQLAAK---SYVLMDATSGNVLVENNGDQRLAPASLTKLMTAYIATLEIRRGQIG 84

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            N  + +S+ A     S++++K  +  T    +  +I +S ND S A  E I+GSE  FA
Sbjct: 85  ENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAISEHIAGSEDAFA 144

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+  A  +GM N+ + N +GL +    ++A D AIL   +    P +Y  +S ++F +
Sbjct: 145 DMMNKTAGDLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQKEFFW 204

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
                 N N LL +   +DG+KTG+T  +G+ +V+S       ++AVV G  + Q R  +
Sbjct: 205 NGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEQARAAE 264

Query: 280 ALELIT 285
             +L+T
Sbjct: 265 TQKLLT 270


>gi|283784410|ref|YP_003364275.1| penicillin-binding protein 5 (D-alanyl-D-alanine carboxypeptidase)
           [Citrobacter rodentium ICC168]
 gi|282947864|emb|CBG87425.1| penicillin-binding protein 5 (D-alanyl-D-alanine carboxypeptidase)
           [Citrobacter rodentium ICC168]
          Length = 403

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 133/253 (52%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADTRRDPASLTKMMTSYVIGQAMKAGKFK 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 94  ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVTALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSVYK 213

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 214 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTAKAGYNLVASATEGQMRLISAVMGGRT 273

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 274 YKGRETESKKLLT 286


>gi|241668486|ref|ZP_04756064.1| Serine-type D-Ala-D-Ala carboxypeptidase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254877020|ref|ZP_05249730.1| D-alanyl-D-alanine carboxypeptidase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254843041|gb|EET21455.1| D-alanyl-D-alanine carboxypeptidase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 444

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 122/265 (46%), Gaps = 52/265 (19%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D  R PASLTK+MT YI+   +++  L  +T +P+S+ AA+   SK+Y+K     + +  
Sbjct: 74  DVRRPPASLTKIMTSYIVASEIKAGNLSWDTMVPISEKAASTGGSKMYVKAGAKVSVKNL 133

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +   S ND + A  E+I G+ + F  LM+  AK IGM NT + N  GL    Q TTA
Sbjct: 134 VTGMDVVSGNDATIALAEYIGGTAEAFTDLMNQTAKAIGMNNTHFANPDGLPGGEQYTTA 193

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYR------------------------------- 220
            D A+L      NFP  YK +  R   +                                
Sbjct: 194 HDMALLARSYIYNFPDAYKIYDDRGLVWNATQQESVSIADRKQCLPKFDRSSGNVLESFS 253

Query: 221 --------------------NRIITNH-NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
                               N ++ N+ N+LL      DG+KTG+T  +G+ +V+S +  
Sbjct: 254 AKGLDSQAQDKCSKLFPKGDNFVLQNNRNRLLFTFDGADGMKTGHTDAAGYCLVSSAKQD 313

Query: 260 DDPIVAVVMGMPTSQERDQKALELI 284
            +  ++VV+G  +S +RD ++ +L+
Sbjct: 314 GERFISVVLGTSSSAKRDSESSKLL 338


>gi|167627934|ref|YP_001678434.1| Serine-type D-Ala-D-Ala carboxypeptidase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167597935|gb|ABZ87933.1| Serine-type D-Ala-D-Ala carboxypeptidase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 444

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 122/265 (46%), Gaps = 52/265 (19%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D  R PASLTK+MT YI+   +++  L  +T +P+S+ AA+   SK+Y+K     + +  
Sbjct: 74  DVRRPPASLTKIMTSYIVASEIKAGNLSWDTMVPISEKAASTGGSKMYVKAGAKVSVKNL 133

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +   S ND + A  E+I G+ + F  LM+  AK IGM NT + N  GL    Q TTA
Sbjct: 134 VTGMDVVSGNDATIALAEYIGGTAEAFTDLMNQTAKAIGMNNTHFANPDGLPGGEQYTTA 193

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYR------------------------------- 220
            D A+L      NFP  YK +  R   +                                
Sbjct: 194 HDMALLARSYIYNFPDAYKIYDDRGLVWNATQQESVSIADRKQCLPKFDRSSGNVLESFS 253

Query: 221 --------------------NRIITNH-NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
                               N ++ N+ N+LL      DG+KTG+T  +G+ +V+S +  
Sbjct: 254 AKGLDSQAQDKCAKLFPKGDNFVLQNNRNRLLFTFDGADGMKTGHTDAAGYCLVSSAKQD 313

Query: 260 DDPIVAVVMGMPTSQERDQKALELI 284
            +  ++VV+G  +S +RD ++ +L+
Sbjct: 314 GERFISVVLGTSSSAKRDSESSKLL 338


>gi|257482223|ref|ZP_05636264.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289625781|ref|ZP_06458735.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289648433|ref|ZP_06479776.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298488990|ref|ZP_07007013.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|302185158|ref|ZP_07261831.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           syringae 642]
 gi|298156488|gb|EFH97585.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320322699|gb|EFW78792.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330516|gb|EFW86495.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330867177|gb|EGH01886.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330871065|gb|EGH05774.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330873695|gb|EGH07844.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330987605|gb|EGH85708.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 386

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 129/246 (52%), Gaps = 4/246 (1%)

Query: 41  MISMASELHAKPKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           M   A +L AK   S +++D  + N +     D+   PASLTK+MT YI    ++  ++ 
Sbjct: 28  MTPAAPQLAAK---SYVLMDATSGNVLVENNGDQRLAPASLTKLMTAYIATLEIRRGQIG 84

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            N  + +S+ A     S++++K  +  T    +  +I +S ND S A  E I+GSE  FA
Sbjct: 85  ENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAISEHIAGSEDAFA 144

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+  A  +GM N+ + N +GL +    ++A D AIL   +    P +Y  +S ++F +
Sbjct: 145 DMMNKTAGDLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQKEFFW 204

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
                 N N LL +   +DG+KTG+T  +G+ +V+S       ++AVV G  + Q R  +
Sbjct: 205 NGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEQARAAE 264

Query: 280 ALELIT 285
             +L+T
Sbjct: 265 TQKLLT 270


>gi|283785832|ref|YP_003365697.1| penicillin-binding protein 6B [Citrobacter rodentium ICC168]
 gi|282949286|emb|CBG88897.1| penicillin-binding protein 6B [Citrobacter rodentium ICC168]
          Length = 390

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 132/251 (52%), Gaps = 8/251 (3%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  A +  A    S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  
Sbjct: 27  VDFAPQPPAIEAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISP 86

Query: 101 NTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
           +  + V + A A  NP     S ++LK+    +       LI  S ND   A  ++++G 
Sbjct: 87  DDIVTVGRDAWAKDNPVFVGSSLMFLKQGDRVSVRDLSRGLIVDSGNDACVALADYVAGG 146

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           + +F  +M+N  KK+ +Q+T ++   GL    Q ++A D A+L   +    P++Y  +S 
Sbjct: 147 QPQFVAMMNNYVKKLHLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSE 206

Query: 215 RKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           +   +      N N LL +K  N+DG+KTG+T  +GFN++ S       ++AV+MG  + 
Sbjct: 207 KSLTWNGITQYNRNGLLWDKSLNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVIMGAQSP 266

Query: 274 QERDQKALELI 284
           + R+++A +L+
Sbjct: 267 KGREEQARKLL 277


>gi|317405763|gb|EFV86054.1| penicillin-binding protein [Achromobacter xylosoxidans C54]
          Length = 385

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 140/267 (52%), Gaps = 11/267 (4%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRY-PASLTKMM 84
           +L   +L  +  M    ++   +P  S+   +++D    Q+        R  PASLTK+M
Sbjct: 5   KLAASLLVATACMSGALAQSMPQPDLSAKAWLLLDETSGQVIASHAATARIEPASLTKIM 64

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNP--SKLYLKEKTYFTTEQGILALITRSAND 142
           T Y++F  + +K+L  + ++ +S  A    P  SK++L+  +  + +Q +  L+ +S ND
Sbjct: 65  TAYVVFGAIHNKELSPDQKVVISTRAWKVPPGSSKMFLEPGSRVSVDQLLRGLMIQSGND 124

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E +SGS + F   M++ A ++G+  T + +  GL D    +T  D +IL     
Sbjct: 125 AAIALAEAVSGSVEAFVARMNDTAVQLGLHGTHFASPHGLPDPGTYSTVSDLSILATRFI 184

Query: 203 KNFPQYYK-YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           +++PQ YK Y S + + Y N    N N+LL    ++DG+KTG+T  +G+ IV +    + 
Sbjct: 185 RDYPQLYKTYDSAKTYTYNNITQPNRNRLLWLDPSVDGLKTGHTDAAGYCIVATAHRPNG 244

Query: 262 P----IVAVVMGMPTSQERDQKALELI 284
                ++ VV+G  + + R Q++ EL+
Sbjct: 245 KEQRRLITVVVGTASDKLRTQESRELL 271


>gi|315181925|gb|ADT88838.1| D-alanyl-D-alanine carboxypeptidase [Vibrio furnissii NCTC 11218]
          Length = 390

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 137/263 (52%), Gaps = 8/263 (3%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTL 86
           + L+    F + I++    +L AK     +++D N  Q +     +E   PASLTK+MT 
Sbjct: 15  MSLLSATSFAAPIVVPNPPQLSAK---GYVLMDYNTGQVLVEHNANEKMNPASLTKLMTS 71

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDV 143
           Y+  + ++   +    Q+ +S+ A  +N    SK++++  T          LI +S ND 
Sbjct: 72  YVAGQEMKRGNIKPTDQVTISQKAWAKNFPDSSKMFIEVGTSVNMMDLYRGLIVQSGNDA 131

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           S A  E ++GSE  F  LM++ A+++G+ NT + N  GL      TT  D A L   + +
Sbjct: 132 SVAIAEHVAGSENAFVDLMNSWAQRLGLNNTAFTNPHGLDSDGLYTTPYDIAKLAQAIIR 191

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           + P+ Y  +S   F Y      N N LL ++  N+DG+KTG+T  +G+++VTS    +  
Sbjct: 192 DLPEIYPIYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGFTSGAGYSLVTSATNGNMR 251

Query: 263 IVAVVMGMPTSQERDQKALELIT 285
           +++ VMG  + + R+  + +L++
Sbjct: 252 LISAVMGANSMKSRESDSKQLLS 274


>gi|66047588|ref|YP_237429.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas syringae pv.
           syringae B728a]
 gi|63258295|gb|AAY39391.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas syringae pv.
           syringae B728a]
          Length = 395

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 129/246 (52%), Gaps = 4/246 (1%)

Query: 41  MISMASELHAKPKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           M   A +L AK   S +++D  + N +     D+   PASLTK+MT YI    ++  ++ 
Sbjct: 37  MTPAAPQLAAK---SYVLMDATSGNVLVENNGDQRLAPASLTKLMTAYIATLEIRRGQIG 93

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            N  + +S+ A     S++++K  +  T    +  +I +S ND S A  E I+GSE  FA
Sbjct: 94  ENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAISEHIAGSEDAFA 153

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+  A  +GM N+ + N +GL +    ++A D AIL   +    P +Y  +S ++F +
Sbjct: 154 DMMNKTAGDLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQKEFFW 213

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
                 N N LL +   +DG+KTG+T  +G+ +V+S       ++AVV G  + Q R  +
Sbjct: 214 NGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEQARAAE 273

Query: 280 ALELIT 285
             +L+T
Sbjct: 274 TQKLLT 279


>gi|281416991|ref|ZP_06248011.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           JW20]
 gi|281408393|gb|EFB38651.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           JW20]
          Length = 384

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 139/262 (53%), Gaps = 5/262 (1%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
           R++ ++  I F  ++    A         S+I+I+ +  Q+   K  D P  PAS+TK+M
Sbjct: 8   RSVSVLAVITFFVMMFQVTAFAQFESSAQSAILIEASTGQVLYEKNADVPMPPASITKIM 67

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL--KEKTYFTTEQGILALITRSAND 142
           TL + FE L+   +  + ++ +S+ A     SK++L   +K  F      ++++  SAND
Sbjct: 68  TLLLGFEALEKGLVKWDDEVIISEKAWRMEGSKMFLLVGDKAKFGEIMTGISVV--SAND 125

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
              A  E + GSE+ F  +M+ +AK++G+ NT + N++GL  +  + +ARD + L   L 
Sbjct: 126 GCVALAEHLYGSEEAFVQVMNTRAKELGLTNTNFANSNGLPAEGHVMSARDISTLARYLI 185

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           +N+P+  +  S  ++ Y N    N N LL      DG+KTG+T  +G+ IV + +     
Sbjct: 186 QNYPKILELESTTEYTYNNIRQFNRNPLLGVFPGADGLKTGWTEEAGYCIVGTAQQNGQR 245

Query: 263 IVAVVMGMPTSQERDQKALELI 284
           ++ VV+   + +ER +   EL+
Sbjct: 246 MIGVVLKTSSEKERSKAIQELL 267


>gi|28871936|ref|NP_794555.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213968044|ref|ZP_03396190.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           tomato T1]
 gi|301383639|ref|ZP_07232057.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           tomato Max13]
 gi|302063161|ref|ZP_07254702.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           tomato K40]
 gi|302131282|ref|ZP_07257272.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28855189|gb|AAO58250.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213927387|gb|EEB60936.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           tomato T1]
 gi|330873583|gb|EGH07732.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963469|gb|EGH63729.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331014742|gb|EGH94798.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 386

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 129/246 (52%), Gaps = 4/246 (1%)

Query: 41  MISMASELHAKPKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           M   A +L AK   S +++D  + N +     D+   PASLTK+MT YI    ++  ++ 
Sbjct: 28  MTPAAPQLAAK---SYVLMDATSGNVLVENNGDQRLAPASLTKLMTAYIATLEIRRGQIG 84

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            N  + +S+ A     S++++K  +  T    +  +I +S ND S A  E I+GSE  FA
Sbjct: 85  ENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAISEHIAGSEDAFA 144

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+  A  +GM N+ + N +GL +    ++A D AIL   +    P +Y  +S ++F +
Sbjct: 145 DMMNKTAGDLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQKEFFW 204

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
                 N N LL +   +DG+KTG+T  +G+ +V+S       ++AVV G  + Q R  +
Sbjct: 205 NGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEQARAAE 264

Query: 280 ALELIT 285
             +L+T
Sbjct: 265 TQKLLT 270


>gi|331011314|gb|EGH91370.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 386

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 129/246 (52%), Gaps = 4/246 (1%)

Query: 41  MISMASELHAKPKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           M   A +L AK   S +++D  + N +     D+   PASLTK+MT YI    ++  ++ 
Sbjct: 28  MTPAAPQLAAK---SYVLMDATSGNVLVENNGDQRLAPASLTKLMTAYIATLEIRRGQIG 84

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            N  + +S+ A     S++++K  +  T    +  +I +S ND S A  E I+GSE  FA
Sbjct: 85  ENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAISEHIAGSEDAFA 144

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+  A  +GM N+ + N +GL +    ++A D AIL   +    P +Y  +S ++F +
Sbjct: 145 DMMNKTAGDLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQKEFFW 204

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
                 N N LL +   +DG+KTG+T  +G+ +V+S       ++AVV G  + Q R  +
Sbjct: 205 NGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEQARAAE 264

Query: 280 ALELIT 285
             +L+T
Sbjct: 265 TQKLLT 270


>gi|188586281|ref|YP_001917826.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350968|gb|ACB85238.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 395

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 140/276 (50%), Gaps = 33/276 (11%)

Query: 34  ILFLSIIMI--------SMASELHA------KPKYSSIVIDVNKNQMTGFKQDEPRYPAS 79
           +LFL+I ++        S   EL A      +PK   I+++ +K +          YPAS
Sbjct: 10  VLFLAISLVFQGSTAKTSPEDELEAPVYLLGEPKSGEILLEQDKQEQV--------YPAS 61

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MTL +  E L+++++ L  ++ V + A     + ++L++    T +  I A+   S
Sbjct: 62  ITKIMTLLLTMEALENEQIALEEEVIVPREAEDIPGTTIFLQQGEKITVDDLITAIAVGS 121

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AND S A  + ISG+   F   M++KA+++GM+NT ++N  GLH    +TTA D  I+  
Sbjct: 122 ANDASIAIAKHISGTVDNFVDEMNDKARELGMKNTNFENPHGLHHDEHVTTAEDIFIMAS 181

Query: 200 LLRK--NFPQYYKYFSIRKFRYRNRII---------TNHNKLLNKMHNIDGIKTGYTRNS 248
            L K      + + + I  F    +++         +N N+L+N+    DG KTG+T  S
Sbjct: 182 ELGKYEEIHDWLEIWLIEDFLQGKKVVEDDEEGIFLSNTNRLVNQYPGCDGFKTGFTEES 241

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
             +I  + +   +  +A++M    S  R ++A+ L+
Sbjct: 242 KHSITATAKQNGERYIAIIMSHEDSDGRFEEAMNLL 277


>gi|157146752|ref|YP_001454071.1| D-alanyl-D-alanine carboxypeptidase fraction A [Citrobacter koseri
           ATCC BAA-895]
 gi|157083957|gb|ABV13635.1| hypothetical protein CKO_02526 [Citrobacter koseri ATCC BAA-895]
          Length = 403

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 133/253 (52%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADTRRDPASLTKMMTSYVIGQAMKAGKFK 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 94  ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYK 213

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 214 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 273

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 274 YKGRETESKKLLT 286


>gi|254562080|ref|YP_003069175.1| penicillin binding protein, beta-lactamase/transpeptidase-like
           superfamily [Methylobacterium extorquens DM4]
 gi|254269358|emb|CAX25324.1| putative penicillin binding protein,
           beta-lactamase/transpeptidase-like superfamily
           [Methylobacterium extorquens DM4]
          Length = 403

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 131/237 (55%), Gaps = 10/237 (4%)

Query: 56  SIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           +I+ID +   +  F++  DEP  PAS+ K+MT  I+F  ++  +L ++++  V++ A   
Sbjct: 27  AILIDADSGSVL-FEKAADEPFSPASMAKLMTAEIVFRAIKEGRLSMDSEFTVTEDAWRR 85

Query: 111 --ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
             A    S ++ +  +       +  LI +S ND +    E ++G+E  FA +M+ +AK+
Sbjct: 86  GGAGGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDAAITIAENMAGTEDAFAGMMNQRAKE 145

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-ITNH 227
           IG+  + ++NA+G    +Q  TARD A +   L   +P++YK +S R+F + NRI   N 
Sbjct: 146 IGLTRSTFRNATGYSAPDQKVTARDMARIAQHLIDTYPEFYKIYSEREFTW-NRIKQQNR 204

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N LL      DG+KTGY   SG+ +  S       ++ VV G+ T+++R  +A +++
Sbjct: 205 NPLLTLDIGADGLKTGYLEESGYALTGSAVQNGQRLIMVVSGLKTARDRAAEARKMM 261


>gi|331661996|ref|ZP_08362919.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA143]
 gi|315616449|gb|EFU97066.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 3431]
 gi|331060418|gb|EGI32382.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA143]
          Length = 394

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 133/253 (52%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 28  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFK 84

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 85  ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 144

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 145 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYK 204

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 205 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 264

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 265 FKGREAESKKLLT 277


>gi|90424200|ref|YP_532570.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisB18]
 gi|90106214|gb|ABD88251.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisB18]
          Length = 418

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 114/218 (52%), Gaps = 5/218 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYF 126
           DE R P+S+ K+MT+ ++F  LQ   + L  Q  VS+ A     A    S ++ +  +  
Sbjct: 78  DELRAPSSMMKLMTVELVFRALQQGDIKLTDQYQVSENAWRKGGAPAGNSTMFAEIHSRI 137

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
             E  +   I +S ND    F E + G E+ FA L++ +A+++G+  + + N++GL D  
Sbjct: 138 AVEDLLRGAIVQSGNDACMVFAEALGGGERGFAELLTKRARELGLAKSTFANSNGLPDPG 197

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
              + R+ A L   L + +P++YK F  R+F +     TN N LL  +   DG+KTGYT+
Sbjct: 198 NKMSVRELARLARHLIQTYPEFYKIFGEREFTWNKIRQTNRNPLLTMLDGADGLKTGYTK 257

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
             G+ +V S       ++ V+ G+    +R  +A +L+
Sbjct: 258 EGGYGMVGSAVQNGMRLIVVINGVEDIDDRASEAKKLL 295


>gi|71736558|ref|YP_276518.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557111|gb|AAZ36322.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 395

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 129/246 (52%), Gaps = 4/246 (1%)

Query: 41  MISMASELHAKPKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           M   A +L AK   S +++D  + N +     D+   PASLTK+MT YI    ++  ++ 
Sbjct: 37  MTPAAPQLAAK---SYVLMDATSGNVLVENNGDQRLAPASLTKLMTAYIATLEIRRGQIG 93

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            N  + +S+ A     S++++K  +  T    +  +I +S ND S A  E I+GSE  FA
Sbjct: 94  ENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAISEHIAGSEDAFA 153

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+  A  +GM N+ + N +GL +    ++A D AIL   +    P +Y  +S ++F +
Sbjct: 154 DMMNKTAGDLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQKEFFW 213

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
                 N N LL +   +DG+KTG+T  +G+ +V+S       ++AVV G  + Q R  +
Sbjct: 214 NGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEQARAAE 273

Query: 280 ALELIT 285
             +L+T
Sbjct: 274 TQKLLT 279


>gi|193063321|ref|ZP_03044411.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22]
 gi|192930905|gb|EDV83509.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22]
          Length = 403

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 133/253 (52%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFK 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 94  ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYK 213

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 214 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 273

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 274 FKGREAESKKLLT 286


>gi|320175126|gb|EFW50238.1| D-alanyl-D-alanine carboxypeptidase [Shigella dysenteriae CDC
           74-1112]
 gi|320185393|gb|EFW60163.1| D-alanyl-D-alanine carboxypeptidase [Shigella flexneri CDC 796-83]
 gi|332097731|gb|EGJ02705.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella boydii 3594-74]
          Length = 403

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 133/253 (52%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFK 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 94  ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYK 213

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 214 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 273

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 274 FKGREAESKKLLT 286


>gi|260769394|ref|ZP_05878327.1| D-alanyl-D-alanine carboxypeptidase [Vibrio furnissii CIP 102972]
 gi|260614732|gb|EEX39918.1| D-alanyl-D-alanine carboxypeptidase [Vibrio furnissii CIP 102972]
          Length = 390

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 137/263 (52%), Gaps = 8/263 (3%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTL 86
           + L+    F + I++    +L AK     +++D N  Q +     +E   PASLTK+MT 
Sbjct: 15  MSLLSATSFAAPIVVPNPPQLSAK---GYVLMDYNTGQVLVEHNANEKMNPASLTKLMTS 71

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDV 143
           Y+  + ++   +    Q+ +S+ A  +N    SK++++  T          LI +S ND 
Sbjct: 72  YVAGQEMKRGNIKPTDQVTISQKAWAKNFPDSSKMFIEVGTSVNMMDLYRGLIVQSGNDA 131

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           S A  E ++GSE  F  LM++ A+++G+ NT + N  GL      TT  D A L   + +
Sbjct: 132 SVAIAEHVAGSENAFVDLMNSWAQRLGLNNTAFTNPHGLDSDGLYTTPYDIAKLAQAIIR 191

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           + P+ Y  +S   F Y      N N LL ++  N+DG+KTG+T  +G+++VTS    +  
Sbjct: 192 DLPEIYPIYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGFTSGAGYSLVTSATNGNMR 251

Query: 263 IVAVVMGMPTSQERDQKALELIT 285
           +++ VMG  + + R+  + +L++
Sbjct: 252 LISAVMGANSMKSRESDSKQLLS 274


>gi|167572961|ref|ZP_02365835.1| family S11 unassigned peptidase [Burkholderia oklahomensis C6786]
          Length = 328

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 140/269 (52%), Gaps = 13/269 (4%)

Query: 29  QLMGKILFLSIIMISMASELHAKPK---YSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMM 84
           +++G +L ++  + +  ++    P+    S +V+D +  + +        R PASLTK+M
Sbjct: 24  RILGAMLVVATSIAANGAQASPAPQIQAVSWLVVDADSGKTLAEHNVSARREPASLTKLM 83

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSK---TAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           T Y+  + L+   L  + ++ ++     +   + +++YL           +  LI  SAN
Sbjct: 84  TAYLALDALKQGTLRWDEKVEIAADDIASVGNDEARMYLAPGQRVQVRDLVRGLIVASAN 143

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D +    + I GS   FA  M++ A+++GM+++ + + SG+   +  +TA D +IL   L
Sbjct: 144 DAALVLAKRIGGSPAGFAKRMNDAAQRLGMRDSHFVSPSGITTPDHYSTAHDLSILARHL 203

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR---- 257
            ++FP++Y + S + F Y     TN N+LL     +DG+KTG+T  +G+ +V + +    
Sbjct: 204 NQDFPEFYTFSSQQHFEYGKFAKTNKNRLLRADPTVDGMKTGHTNAAGWCMVVTAKRGVA 263

Query: 258 --YKDDPIVAVVMGMPTSQERDQKALELI 284
             +    ++AV++G PT ++R   A  L+
Sbjct: 264 GSHAKHRVIAVLLGEPTEKQRLADARRLL 292


>gi|24112068|ref|NP_706578.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella flexneri
           2a str. 301]
 gi|30062179|ref|NP_836350.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella flexneri
           2a str. 2457T]
 gi|82543078|ref|YP_407025.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella boydii
           Sb227]
 gi|24050895|gb|AAN42285.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding
           protein 5 [Shigella flexneri 2a str. 301]
 gi|30040424|gb|AAP16156.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding
           protein 5 [Shigella flexneri 2a str. 2457T]
 gi|81244489|gb|ABB65197.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Shigella boydii
           Sb227]
 gi|313649723|gb|EFS14147.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri 2a str.
           2457T]
 gi|332760998|gb|EGJ91286.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri
           4343-70]
 gi|332763369|gb|EGJ93609.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-671]
 gi|332768266|gb|EGJ98451.1| penicillin-binding protein 6 [Shigella flexneri 2930-71]
 gi|333007457|gb|EGK26937.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri VA-6]
 gi|333007869|gb|EGK27345.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-218]
 gi|333010043|gb|EGK29478.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-272]
 gi|333020876|gb|EGK40136.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-227]
 gi|333021546|gb|EGK40796.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-304]
          Length = 403

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 133/253 (52%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFK 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 94  ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYK 213

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 214 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 273

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 274 FKGREAESKKLLT 286


>gi|294637039|ref|ZP_06715354.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC
           23685]
 gi|291089736|gb|EFE22297.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC
           23685]
          Length = 399

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 143/262 (54%), Gaps = 15/262 (5%)

Query: 37  LSIIMISMASELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEY 92
           L+++ + + +   A P+ ++   I++D +  + +T    D+   PASLTK+M  Y+I + 
Sbjct: 19  LTLVALPLLAAEPAPPQINAKAYILLDYDSGRVLTEGNADQRLDPASLTKIMASYVIGQA 78

Query: 93  LQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           L+S K+     + V K A AT NP     S ++LK        +    ++ +S ND S A
Sbjct: 79  LKSGKIAPGDMVVVGKDAWATGNPVLRGSSLMFLKPGDRVPVSELNRGVVIQSGNDASIA 138

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             + ++GS+  F  LM+   +  G++NT ++   GL    Q ++ARD A++   L  + P
Sbjct: 139 LADHVAGSQDAFVNLMNKYVESWGLKNTHFRTVHGLDSAGQYSSARDMALISQHLIADVP 198

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP--I 263
             Y+    ++F + N   TN N+LL +   N+DG+KTG+T  +G N+V S    D P  +
Sbjct: 199 DEYQLNKEKEFTFNNIRQTNRNRLLWDTSLNVDGVKTGFTNGAGHNLVAS--ATDGPMRL 256

Query: 264 VAVVMGMPTSQERDQKALELIT 285
           ++VV+G P+ + R +++ +L+T
Sbjct: 257 ISVVLGAPSDRVRFEESKKLLT 278


>gi|91977185|ref|YP_569844.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisB5]
 gi|91683641|gb|ABE39943.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisB5]
          Length = 432

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 126/237 (53%), Gaps = 8/237 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-- 110
           ++I+ID     +  F++  DE R P+S+ K+MT+ ++F  L   ++ L     +S+ A  
Sbjct: 74  TAILIDAESGSVL-FEKNADELRPPSSMLKLMTVELVFHLLTKGEIKLTDDYRISENAWR 132

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
              A    S ++ +  +  + +  +   I +S ND   A  E I+GSE+ FA  M+ +A+
Sbjct: 133 RGGAPAGSSTMFAEIHSRVSIDDLLRGAIIQSGNDSCIALAEGIAGSEQAFAERMTKRAR 192

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           +IG+  + + N++GL D     + R+   L   L + +P YYK F  ++F +     TN 
Sbjct: 193 EIGLAQSTFANSNGLPDPGNKMSVRELGRLARHLIQTYPDYYKLFGEKEFTWNKIRQTNR 252

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N LLN M   DG+KTGYT++ G+ +V S       ++ VV G+  + +R  +A +L+
Sbjct: 253 NPLLNTMPGADGLKTGYTKDGGYGMVGSAVQNGTRLIVVVNGVEDADDRASEAKKLL 309


>gi|87119258|ref|ZP_01075156.1| D-alanyl-D-alanine carboxypeptidase [Marinomonas sp. MED121]
 gi|86165649|gb|EAQ66916.1| D-alanyl-D-alanine carboxypeptidase [Marinomonas sp. MED121]
          Length = 408

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 133/262 (50%), Gaps = 12/262 (4%)

Query: 34  ILFLSIIMISMASELHAKPKY----------SSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           ILF + +M+S+ + ++A P            S I++D    ++         YP ASLTK
Sbjct: 32  ILF-AALMLSLVTSVYAAPTLIPAPPQLSATSYILLDAYTGEVLVEHNSRKEYPPASLTK 90

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT YI+        + L   + VS+ A     S+++++E T    E  +  +I +S ND
Sbjct: 91  LMTAYIVDYERNRGNIGLEDMVRVSEKAWRMEGSRMFIREGTKVNLEDLMRGIIIQSGND 150

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            S A  E I+GSE  FA LM+  A+ +GM N+ + N++G   +   ++A D A+L     
Sbjct: 151 ASVAVAEHIAGSEGAFADLMNQHAELLGMNNSHFVNSTGYPAEGHYSSAYDLAVLSRAKI 210

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
             FP  Y  +S + F Y +    N NKLL +   +DG+KTG+T  +G+ +  S       
Sbjct: 211 IQFPDSYPMYSEKYFTYNDIRQPNRNKLLWRDKTVDGLKTGHTEAAGYCLAASAVRNGTR 270

Query: 263 IVAVVMGMPTSQERDQKALELI 284
           +++VVMG  + + R  +  +L+
Sbjct: 271 LISVVMGTKSDEARANETQKLL 292


>gi|331666984|ref|ZP_08367858.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA271]
 gi|331066208|gb|EGI38092.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA271]
          Length = 403

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 133/253 (52%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFK 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 94  ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYK 213

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 214 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 273

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 274 FKGREAESKKLLT 286


>gi|309787902|ref|ZP_07682512.1| D-alanyl-D-alanine carboxypeptidase dacD [Shigella dysenteriae
           1617]
 gi|308924301|gb|EFP69798.1| D-alanyl-D-alanine carboxypeptidase dacD [Shigella dysenteriae
           1617]
          Length = 347

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 124/226 (54%), Gaps = 7/226 (3%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLY 119
           +T   + + R PASLTK+MT Y++   + S ++  +  + V + A A  NP     S ++
Sbjct: 9   LTSGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMF 68

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           LKE    +       LI  S ND   A  ++I+G +++F  +M+N  +K+ +++T ++  
Sbjct: 69  LKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYVEKLHLKDTHFETV 128

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNID 238
            GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL +K  NID
Sbjct: 129 HGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNID 188

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           G+KTG+T  +GFN++ S       ++AVVMG  +++ R+++A +L+
Sbjct: 189 GLKTGHTSGAGFNLMASAVDGQRRLIAVVMGADSAKGREEEARKLL 234


>gi|15800346|ref|NP_286358.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O157:H7 EDL933]
 gi|16128615|ref|NP_415165.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli str. K-12 substr. MG1655]
 gi|26246612|ref|NP_752652.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           CFT073]
 gi|74311168|ref|YP_309587.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella sonnei
           Ss046]
 gi|82775901|ref|YP_402248.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella
           dysenteriae Sd197]
 gi|89107501|ref|AP_001281.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K-12
           substr. W3110]
 gi|91209679|ref|YP_539665.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           UTI89]
 gi|110640861|ref|YP_668589.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           536]
 gi|117622848|ref|YP_851761.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           APEC O1]
 gi|157159257|ref|YP_001461799.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           E24377A]
 gi|168770236|ref|ZP_02795243.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4486]
 gi|168778083|ref|ZP_02803090.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4196]
 gi|168779124|ref|ZP_02804131.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4076]
 gi|168786481|ref|ZP_02811488.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC869]
 gi|170080211|ref|YP_001729531.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli str. K-12 substr. DH10B]
 gi|170080312|ref|YP_001729632.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli str. K-12 substr. DH10B]
 gi|170683720|ref|YP_001742748.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           SMS-3-5]
 gi|188495416|ref|ZP_03002686.1| penicillin-binding protein 5 [Escherichia coli 53638]
 gi|191167358|ref|ZP_03029174.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A]
 gi|191172298|ref|ZP_03033840.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11]
 gi|194437465|ref|ZP_03069562.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1]
 gi|208808249|ref|ZP_03250586.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4206]
 gi|208815700|ref|ZP_03256879.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4045]
 gi|208823277|ref|ZP_03263595.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4042]
 gi|209398518|ref|YP_002269267.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4115]
 gi|209917890|ref|YP_002291974.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           SE11]
 gi|215485672|ref|YP_002328103.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217326125|ref|ZP_03442209.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. TW14588]
 gi|218553174|ref|YP_002386087.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           IAI1]
 gi|218557570|ref|YP_002390483.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           S88]
 gi|218688455|ref|YP_002396667.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           ED1a]
 gi|218694072|ref|YP_002401739.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           55989]
 gi|218699004|ref|YP_002406633.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           IAI39]
 gi|218703966|ref|YP_002411485.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           UMN026]
 gi|227884389|ref|ZP_04002194.1| serine family D-Ala-D-Ala carboxypeptidase [Escherichia coli 83972]
 gi|237707395|ref|ZP_04537876.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia sp.
           3_2_53FAA]
 gi|238899909|ref|YP_002925705.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli BW2952]
 gi|253774382|ref|YP_003037213.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160714|ref|YP_003043822.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli B
           str. REL606]
 gi|254791798|ref|YP_003076635.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O157:H7 str. TW14359]
 gi|256020584|ref|ZP_05434449.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella sp. D9]
 gi|260842858|ref|YP_003220636.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O103:H2 str.
           12009]
 gi|260853884|ref|YP_003227775.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O26:H11 str.
           11368]
 gi|260866780|ref|YP_003233182.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O111:H- str.
           11128]
 gi|261224099|ref|ZP_05938380.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261257793|ref|ZP_05950326.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291281583|ref|YP_003498401.1| D-alanyl-D-alanine carboxypeptidase dacA precursor [Escherichia
           coli O55:H7 str. CB9615]
 gi|293403894|ref|ZP_06647888.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           FVEC1412]
 gi|293408757|ref|ZP_06652596.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293413928|ref|ZP_06656577.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           B185]
 gi|293418743|ref|ZP_06661178.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           B088]
 gi|297519791|ref|ZP_06938177.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           OP50]
 gi|298379670|ref|ZP_06989275.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           FVEC1302]
 gi|300817851|ref|ZP_07098065.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           107-1]
 gi|300823054|ref|ZP_07103188.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           119-7]
 gi|300901139|ref|ZP_07119246.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           198-1]
 gi|300907806|ref|ZP_07125423.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1]
 gi|300920556|ref|ZP_07136981.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           115-1]
 gi|300927270|ref|ZP_07142998.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           182-1]
 gi|300931564|ref|ZP_07146878.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           187-1]
 gi|300937897|ref|ZP_07152688.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1]
 gi|300990039|ref|ZP_07179081.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1]
 gi|300996738|ref|ZP_07181525.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           200-1]
 gi|301025238|ref|ZP_07188805.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1]
 gi|301049826|ref|ZP_07196766.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           185-1]
 gi|301302111|ref|ZP_07208244.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           124-1]
 gi|301329153|ref|ZP_07222150.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1]
 gi|306812936|ref|ZP_07447129.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           NC101]
 gi|307312652|ref|ZP_07592284.1| Beta-lactamase [Escherichia coli W]
 gi|309785937|ref|ZP_07680566.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae
           1617]
 gi|309795501|ref|ZP_07689918.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           145-7]
 gi|312965077|ref|ZP_07779314.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 2362-75]
 gi|312970712|ref|ZP_07784893.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1827-70]
 gi|331645789|ref|ZP_08346892.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli M605]
 gi|331651643|ref|ZP_08352662.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli M718]
 gi|331656658|ref|ZP_08357620.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA206]
 gi|331676290|ref|ZP_08377002.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H591]
 gi|331682055|ref|ZP_08382679.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H299]
 gi|332281770|ref|ZP_08394183.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella sp. D9]
 gi|83288470|sp|P0AEB4|DACA_ECO57 RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA;
           Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
           Full=Penicillin-binding protein 5; Short=PBP-5; Flags:
           Precursor
 gi|83288471|sp|P0AEB3|DACA_ECOL6 RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA;
           Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
           Full=Penicillin-binding protein 5; Short=PBP-5; Flags:
           Precursor
 gi|83288472|sp|P0AEB2|DACA_ECOLI RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA;
           Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
           Full=Beta-lactamase; AltName: Full=Penicillin-binding
           protein 5; Short=PBP-5; Flags: Precursor
 gi|12513533|gb|AAG54966.1|AE005242_10 D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding
           protein 5 [Escherichia coli O157:H7 str. EDL933]
 gi|26107011|gb|AAN79195.1|AE016757_99 Penicillin-binding protein 5 precursor [Escherichia coli CFT073]
 gi|41212|emb|CAA29774.1| unnamed protein product [Escherichia coli K-12]
 gi|1651259|dbj|BAA35275.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K12
           substr. W3110]
 gi|1786851|gb|AAC73733.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli str. K-12 substr. MG1655]
 gi|73854645|gb|AAZ87352.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella sonnei
           Ss046]
 gi|81240049|gb|ABB60759.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Shigella
           dysenteriae Sd197]
 gi|91071253|gb|ABE06134.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding
           protein 5 [Escherichia coli UTI89]
 gi|110342453|gb|ABG68690.1| D-alanyl-D-alanine carboxypeptidas, penicillin-binding protein 5
           [Escherichia coli 536]
 gi|115511972|gb|ABJ00047.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding
           protein 5 [Escherichia coli APEC O1]
 gi|157081287|gb|ABV20995.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E24377A]
 gi|169888046|gb|ACB01753.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli str. K-12 substr. DH10B]
 gi|169888147|gb|ACB01854.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli str. K-12 substr. DH10B]
 gi|170521438|gb|ACB19616.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli SMS-3-5]
 gi|187766838|gb|EDU30682.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4196]
 gi|188490615|gb|EDU65718.1| penicillin-binding protein 5 [Escherichia coli 53638]
 gi|189002783|gb|EDU71769.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4076]
 gi|189360912|gb|EDU79331.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4486]
 gi|189373492|gb|EDU91908.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC869]
 gi|190902607|gb|EDV62340.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A]
 gi|190907397|gb|EDV66994.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11]
 gi|194423634|gb|EDX39624.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1]
 gi|208728050|gb|EDZ77651.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4206]
 gi|208732348|gb|EDZ81036.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4045]
 gi|208737470|gb|EDZ85154.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4042]
 gi|209159918|gb|ACI37351.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4115]
 gi|209777148|gb|ACI86886.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli]
 gi|209777150|gb|ACI86887.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli]
 gi|209777152|gb|ACI86888.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli]
 gi|209777154|gb|ACI86889.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli]
 gi|209777156|gb|ACI86890.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli]
 gi|209911149|dbj|BAG76223.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli SE11]
 gi|215263744|emb|CAS08080.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli O127:H6 str. E2348/69]
 gi|217322346|gb|EEC30770.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. TW14588]
 gi|218350804|emb|CAU96496.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli 55989]
 gi|218359942|emb|CAQ97485.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli IAI1]
 gi|218364339|emb|CAR02013.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli S88]
 gi|218368990|emb|CAR16744.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli IAI39]
 gi|218426019|emb|CAR06836.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli ED1a]
 gi|218431063|emb|CAR11939.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli UMN026]
 gi|222032392|emb|CAP75131.1| Penicillin-binding protein 5 [Escherichia coli LF82]
 gi|226898605|gb|EEH84864.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia sp.
           3_2_53FAA]
 gi|227838475|gb|EEJ48941.1| serine family D-Ala-D-Ala carboxypeptidase [Escherichia coli 83972]
 gi|238860729|gb|ACR62727.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli BW2952]
 gi|242376408|emb|CAQ31107.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding
           protein 5 [Escherichia coli BL21(DE3)]
 gi|253325426|gb|ACT30028.1| Beta-lactamase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972615|gb|ACT38286.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli B str. REL606]
 gi|253976809|gb|ACT42479.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli BL21(DE3)]
 gi|254591198|gb|ACT70559.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli O157:H7 str. TW14359]
 gi|257752533|dbj|BAI24035.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O26:H11 str.
           11368]
 gi|257758005|dbj|BAI29502.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O103:H2 str.
           12009]
 gi|257763136|dbj|BAI34631.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O111:H- str.
           11128]
 gi|281177781|dbj|BAI54111.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli SE15]
 gi|284920432|emb|CBG33493.1| penicillin-binding protein 5 (D-alanyl-D-alanine carboxypeptidase)
           [Escherichia coli 042]
 gi|290761456|gb|ADD55417.1| D-alanyl-D-alanine carboxypeptidase dacA precursor [Escherichia
           coli O55:H7 str. CB9615]
 gi|291325271|gb|EFE64686.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           B088]
 gi|291428480|gb|EFF01505.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           FVEC1412]
 gi|291433986|gb|EFF06959.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           B185]
 gi|291471935|gb|EFF14418.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294492617|gb|ADE91373.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli IHE3034]
 gi|298279368|gb|EFI20876.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           FVEC1302]
 gi|300298421|gb|EFJ54806.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           185-1]
 gi|300304453|gb|EFJ58973.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           200-1]
 gi|300355406|gb|EFJ71276.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           198-1]
 gi|300396141|gb|EFJ79679.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1]
 gi|300400495|gb|EFJ84033.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1]
 gi|300407211|gb|EFJ90749.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1]
 gi|300412458|gb|EFJ95768.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           115-1]
 gi|300416758|gb|EFK00069.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           182-1]
 gi|300457097|gb|EFK20590.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1]
 gi|300460633|gb|EFK24126.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           187-1]
 gi|300524403|gb|EFK45472.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           119-7]
 gi|300529548|gb|EFK50610.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           107-1]
 gi|300842663|gb|EFK70423.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           124-1]
 gi|300844500|gb|EFK72260.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1]
 gi|305853699|gb|EFM54138.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           NC101]
 gi|306907354|gb|EFN37859.1| Beta-lactamase [Escherichia coli W]
 gi|307552502|gb|ADN45277.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli ABU 83972]
 gi|307627930|gb|ADN72234.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           UM146]
 gi|308120876|gb|EFO58138.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           145-7]
 gi|308926048|gb|EFP71526.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae
           1617]
 gi|309700870|emb|CBJ00167.1| penicillin-binding protein 5 (D-alanyl-D-alanine carboxypeptidase)
           [Escherichia coli ETEC H10407]
 gi|310337361|gb|EFQ02499.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1827-70]
 gi|312290168|gb|EFR18051.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 2362-75]
 gi|312945179|gb|ADR26006.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315059887|gb|ADT74214.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli W]
 gi|315135298|dbj|BAJ42457.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           DH1]
 gi|315255065|gb|EFU35033.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 85-1]
 gi|315287076|gb|EFU46490.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           110-3]
 gi|315292098|gb|EFU51450.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           153-1]
 gi|315299178|gb|EFU58432.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 16-3]
 gi|320178421|gb|EFW53389.1| D-alanyl-D-alanine carboxypeptidase [Shigella boydii ATCC 9905]
 gi|320193039|gb|EFW67679.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320194186|gb|EFW68818.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli WV_060327]
 gi|320198242|gb|EFW72846.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli EC4100B]
 gi|320638081|gb|EFX07845.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O157:H7 str. G5101]
 gi|320643487|gb|EFX12657.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O157:H- str. 493-89]
 gi|320648822|gb|EFX17449.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O157:H- str. H 2687]
 gi|320654408|gb|EFX22455.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320660089|gb|EFX27619.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320664886|gb|EFX32021.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323153647|gb|EFZ39895.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli EPECa14]
 gi|323158915|gb|EFZ44926.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli E128010]
 gi|323179892|gb|EFZ65449.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1180]
 gi|323185014|gb|EFZ70381.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1357]
 gi|323191270|gb|EFZ76534.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli RN587/1]
 gi|323379549|gb|ADX51817.1| Beta-lactamase [Escherichia coli KO11]
 gi|323945107|gb|EGB41169.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H120]
 gi|323952790|gb|EGB48658.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H252]
 gi|323958390|gb|EGB54096.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H263]
 gi|323963201|gb|EGB58769.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H489]
 gi|323967579|gb|EGB62995.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli M863]
 gi|323976385|gb|EGB71475.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TW10509]
 gi|324006310|gb|EGB75529.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 57-2]
 gi|324010472|gb|EGB79691.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 60-1]
 gi|324016087|gb|EGB85306.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           117-3]
 gi|324116706|gb|EGC10621.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1167]
 gi|326341383|gb|EGD65175.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           1044]
 gi|326345839|gb|EGD69578.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           1125]
 gi|327254316|gb|EGE65938.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli STEC_7v]
 gi|330910393|gb|EGH38903.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli AA86]
 gi|331044541|gb|EGI16668.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli M605]
 gi|331049921|gb|EGI21979.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli M718]
 gi|331054906|gb|EGI26915.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA206]
 gi|331076348|gb|EGI47630.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H591]
 gi|331080734|gb|EGI51908.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H299]
 gi|332096835|gb|EGJ01825.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae
           155-74]
 gi|332104122|gb|EGJ07468.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella sp. D9]
 gi|332341978|gb|AEE55312.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli UMNK88]
          Length = 403

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 133/253 (52%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFK 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 94  ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYK 213

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 214 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 273

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 274 FKGREAESKKLLT 286


>gi|17987273|ref|NP_539907.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
           16M]
 gi|23501872|ref|NP_697999.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330]
 gi|161618945|ref|YP_001592832.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC
           23365]
 gi|163843260|ref|YP_001627664.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445]
 gi|225627469|ref|ZP_03785506.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo]
 gi|225852496|ref|YP_002732729.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC
           23457]
 gi|254689222|ref|ZP_05152476.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
           str. 870]
 gi|254693707|ref|ZP_05155535.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
           str. Tulya]
 gi|254701743|ref|ZP_05163571.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
           513]
 gi|254704285|ref|ZP_05166113.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
           686]
 gi|254706813|ref|ZP_05168641.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M163/99/10]
 gi|254710077|ref|ZP_05171888.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           B2/94]
 gi|254730255|ref|ZP_05188833.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
           str. 292]
 gi|256031573|ref|ZP_05445187.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M292/94/1]
 gi|256044652|ref|ZP_05447556.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256113538|ref|ZP_05454364.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
           str. Ether]
 gi|256257472|ref|ZP_05463008.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
           str. C68]
 gi|256264013|ref|ZP_05466545.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
           str. 63/9]
 gi|256369413|ref|YP_003106921.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915]
 gi|260168704|ref|ZP_05755515.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. F5/99]
 gi|260563998|ref|ZP_05834484.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
           16M]
 gi|260566468|ref|ZP_05836938.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40]
 gi|260754727|ref|ZP_05867075.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
           str. 870]
 gi|260757950|ref|ZP_05870298.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
           str. 292]
 gi|260883748|ref|ZP_05895362.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
           str. C68]
 gi|261213979|ref|ZP_05928260.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
           str. Tulya]
 gi|261314280|ref|ZP_05953477.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M163/99/10]
 gi|261317626|ref|ZP_05956823.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           B2/94]
 gi|261752296|ref|ZP_05996005.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
           513]
 gi|261754953|ref|ZP_05998662.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
           686]
 gi|261758181|ref|ZP_06001890.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99]
 gi|265988661|ref|ZP_06101218.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M292/94/1]
 gi|265991076|ref|ZP_06103633.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265994911|ref|ZP_06107468.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
           str. Ether]
 gi|297248317|ref|ZP_06932035.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
           5/6) [Brucella abortus bv. 5 str. B3196]
 gi|17982950|gb|AAL52171.1| d-alanyl-d-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
           16M]
 gi|23347810|gb|AAN29914.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330]
 gi|161335756|gb|ABX62061.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC
           23365]
 gi|163673983|gb|ABY38094.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445]
 gi|225617474|gb|EEH14519.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo]
 gi|225640861|gb|ACO00775.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC
           23457]
 gi|255999573|gb|ACU47972.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915]
 gi|260154014|gb|EEW89106.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
           16M]
 gi|260155986|gb|EEW91066.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40]
 gi|260668268|gb|EEX55208.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
           str. 292]
 gi|260674835|gb|EEX61656.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
           str. 870]
 gi|260873276|gb|EEX80345.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
           str. C68]
 gi|260915586|gb|EEX82447.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
           str. Tulya]
 gi|261296849|gb|EEY00346.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           B2/94]
 gi|261303306|gb|EEY06803.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M163/99/10]
 gi|261738165|gb|EEY26161.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99]
 gi|261742049|gb|EEY29975.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
           513]
 gi|261744706|gb|EEY32632.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
           686]
 gi|262766024|gb|EEZ11813.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
           str. Ether]
 gi|263001860|gb|EEZ14435.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263094156|gb|EEZ18078.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
           str. 63/9]
 gi|264660858|gb|EEZ31119.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M292/94/1]
 gi|297175486|gb|EFH34833.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
           5/6) [Brucella abortus bv. 5 str. B3196]
 gi|326409012|gb|ADZ66077.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis M28]
 gi|326538722|gb|ADZ86937.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis
           M5-90]
          Length = 396

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 116/218 (53%), Gaps = 5/218 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYF 126
           D+P  PASL K+MT  ++FE L+  +  L T  PVS+ A     A    S ++ + K+  
Sbjct: 59  DKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEYAWRTGGAPSGTSTMFARIKSTP 118

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           T    +  +I +SAND +    E ++GSE+ FA  M+ +AK++G+ ++ + N++GL    
Sbjct: 119 TVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQRAKELGLSSSKFVNSTGLPAAG 178

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           Q+ T  D   L   +    P+YY+Y+    + + N    N N LL      DG+ TG+T 
Sbjct: 179 QVVTLEDLLNLARHIHAAHPEYYRYYEQPAYTWNNITQRNRNPLLRLEVGADGMGTGFTE 238

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            SG+ +V S       +   + G+ + +ER+++A +LI
Sbjct: 239 ASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLI 276


>gi|83949599|ref|ZP_00958332.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius nubinhibens ISM]
 gi|83837498|gb|EAP76794.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius nubinhibens ISM]
          Length = 403

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 119/227 (52%), Gaps = 16/227 (7%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++ V+DV    +   K  D+P  PAS++K+MTLY+ FE ++  +L +   +PVS  AA  
Sbjct: 34  AAYVVDVGTGTVLLAKNADQPLPPASMSKLMTLYVTFEAIRDGRLSMTETLPVSAHAARY 93

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKIGM 171
             S L+L+     + E  +  +I  S ND      E +S  G+E  FA  M+ +A+ +GM
Sbjct: 94  GGSTLFLQAGERVSVEDLLRGIIVLSGNDACVVLAESLSPDGTEAGFARFMTRRAQNMGM 153

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRK---NFPQYYKYFSIRKFRY-----RNRI 223
            N+ + N++G        + RD   LG+L RK   +FP++Y  F+  +F +     +NR 
Sbjct: 154 TNSAFTNSNGWPAPGHRMSMRD---LGLLARKLIEDFPEFYPMFAEEEFLFDEKESQNRY 210

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             N N LL      DG+KTG+T  +G+ +V S       ++ V+ G+
Sbjct: 211 --NRNPLLGLGIGADGLKTGHTAEAGYGLVGSAVQNGRRVIFVISGL 255


>gi|309389989|gb|ADO77869.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halanaerobium praevalens
           DSM 2228]
          Length = 378

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 145/263 (55%), Gaps = 11/263 (4%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY--PASLTKMMT 85
           I L+   + L+I+  + A ++  KP+ S+ +I+    Q+  F+++  R   PAS+TK+M 
Sbjct: 9   ILLITIFMVLTILPTTFAFDI--KPE-SAFLIEAETGQVL-FEKNADRKLPPASMTKIMP 64

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           L I  E L+   + L  Q+ +S+ A +   S+++L   T    E+ I A+   S ND S 
Sbjct: 65  LLITMEKLEEGSISLTDQVTISRYAESMGGSQIFLAANTQVELEKLIKAVTIASGNDASV 124

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A GE+I+G+   F  +M+ +A+++GM +T + N++GL   N  +TA D +I+   L K+ 
Sbjct: 125 AIGEYIAGTYSNFIAMMNERAEELGMDSTNFSNSTGLPTTNHYSTAHDISIMARELVKH- 183

Query: 206 PQYYKYFSIR----KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
            Q   + SI         R  ++ N N L+NK  ++DG+KTG+T+ +G+ +  + +  D 
Sbjct: 184 SQVLHWASIWTETIDLPNRKAMLVNTNSLINKYPSMDGLKTGHTQEAGYCLTATAKKGDV 243

Query: 262 PIVAVVMGMPTSQERDQKALELI 284
            +++VVM   T   R++    L+
Sbjct: 244 RLISVVMQGETLTAREEATTRLL 266


>gi|86357779|ref|YP_469671.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42]
 gi|86281881|gb|ABC90944.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42]
          Length = 360

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 116/215 (53%), Gaps = 5/215 (2%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTY 125
           +D+   PASL K+MT+ ++F+ +   ++ L+T+ PVS+ A     A    + ++   K+ 
Sbjct: 15  EDQSFSPASLAKLMTMDLVFDAVTKGQITLDTEYPVSEYAWRTGGAPSRTATMFAALKSR 74

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
              E  I  +  + AND      E ++GSE++FA  M+ +A+++GM+  ++ N++GL D 
Sbjct: 75  VRVEDLIKGVAIQGANDSCIIIAEGMAGSEQQFAQSMTRRARELGMEKAVFGNSTGLPDG 134

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
               TAR+   L   L++++P  Y YF+ + F +      N N LL      DG+ TG+ 
Sbjct: 135 KSKVTAREMVTLAAALQQSYPNLYPYFAQQDFEWNKIFQRNRNPLLGLDLGADGLATGFA 194

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
              G++IV S++     +   + G+ + +ER ++A
Sbjct: 195 EGEGYSIVASVQRDGRRLFLALAGIASDKERTEEA 229


>gi|187731390|ref|YP_001879357.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella boydii CDC
           3083-94]
 gi|187428382|gb|ACD07656.1| serine-type D-Ala-D-Ala carboxypeptidase [Shigella boydii CDC
           3083-94]
          Length = 403

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 133/253 (52%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPSVPQIDAE---SYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQTMKAGKFK 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 94  ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYK 213

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 214 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 273

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 274 FKGREAESKKLLT 286


>gi|148559355|ref|YP_001258933.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840]
 gi|148370612|gb|ABQ60591.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840]
          Length = 396

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 116/218 (53%), Gaps = 5/218 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYF 126
           D+P  PASL K+MT  ++FE L+  +  L T  PVS+ A     A    S ++ + K+  
Sbjct: 59  DKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEYAWRTGGAPSGTSTMFARIKSTP 118

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           T    +  +I +SAND +    E ++GSE+ FA  M+ +AK++G+ ++ + N++GL    
Sbjct: 119 TVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQRAKELGLSSSKFVNSTGLPAAG 178

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           Q+ T  D   L   +    P+YY+Y+    + + N    N N LL      DG+ TG+T 
Sbjct: 179 QVVTLEDLLNLARHIHAAHPEYYRYYEQPAYTWNNITQRNRNPLLRLEVGADGMGTGFTE 238

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            SG+ +V S       +   + G+ + +ER+++A +LI
Sbjct: 239 ASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLI 276


>gi|256061084|ref|ZP_05451239.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
 gi|261325086|ref|ZP_05964283.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
 gi|261301066|gb|EEY04563.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
          Length = 396

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 116/218 (53%), Gaps = 5/218 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYF 126
           D+P  PASL K+MT  ++FE L+  +  L T  PVS+ A     A    S ++ + K+  
Sbjct: 59  DKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEYAWRTGGAPSGTSTMFARIKSTP 118

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           T    +  +I +SAND +    E ++GSE+ FA  M+ +AK++G+ ++ + N++GL    
Sbjct: 119 TVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQRAKELGLSSSKFVNSTGLPAAG 178

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           Q+ T  D   L   +    P+YY+Y+    + + N    N N LL      DG+ TG+T 
Sbjct: 179 QVVTLEDLLNLARHIHAAHPEYYRYYEQPAYTWNNITQRNRNPLLRLEVGADGMGTGFTE 238

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            SG+ +V S       +   + G+ + +ER+++A +LI
Sbjct: 239 ASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLI 276


>gi|15829924|ref|NP_308697.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O157:H7 str. Sakai]
 gi|13360128|dbj|BAB34093.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O157:H7 str. Sakai]
          Length = 403

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 133/253 (52%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFK 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 94  DTDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYK 213

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 214 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 273

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 274 FKGREAESKKLLT 286


>gi|167567676|ref|ZP_02360592.1| family S11 unassigned peptidase [Burkholderia oklahomensis EO147]
          Length = 328

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 140/269 (52%), Gaps = 13/269 (4%)

Query: 29  QLMGKILFLSIIMISMASELHAKPK---YSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMM 84
           +++G +L ++  + +  ++    P+    S +V+D +  + +        R PASLTK+M
Sbjct: 24  RILGAMLVVATSIAANGAQASPAPQIQAVSWLVVDADSGKTLAEHNVSARREPASLTKLM 83

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSK---TAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           T Y+  + L+   L  + ++ ++     +   + +++YL           +  LI  SAN
Sbjct: 84  TAYLALDALKQGTLRWDEKVEIAADDIASVGNDEARMYLAPGQRVQVRDLVRGLIVASAN 143

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D +    + I GS   FA  M++ A+++GM+++ + + SG+   +  +TA D +IL   L
Sbjct: 144 DAALVLAKRIGGSPAGFAKRMNDAAQRLGMRDSHFVSPSGITTPDHYSTAHDLSILARHL 203

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR---- 257
            ++FP++Y + S + F Y     TN N+LL     +DG+KTG+T  +G+ +V + +    
Sbjct: 204 NQDFPEFYTFSSQQHFEYGKFAKTNKNRLLRADPTVDGMKTGHTNAAGWCMVVTAKRGVA 263

Query: 258 --YKDDPIVAVVMGMPTSQERDQKALELI 284
             +    ++AV++G PT ++R   A  L+
Sbjct: 264 GSHAKHRVIAVLLGEPTEKQRLADAKRLL 292


>gi|218682277|ref|ZP_03529878.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli CIAT 894]
          Length = 408

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 127/246 (51%), Gaps = 15/246 (6%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNP 115
           + KN+  GF       PASL K+MT+ ++FE +   ++ L+T+ PVS+ A     A    
Sbjct: 59  LAKNEDQGFS------PASLAKLMTMDLVFEAVTKGQITLDTEYPVSEYAWRTGGAPSRA 112

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           + ++   K+    E  I  +  + AND      E ++G+E++FA  M+ +A+++GM+   
Sbjct: 113 ATMFASLKSRVRVEDLIKGVAIQGANDSCIILAEGMAGTEQQFAESMTRRARELGMEKAE 172

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           + N++GL D     TAR+   L   L++++P  Y YF+   F +      N N LL    
Sbjct: 173 FGNSTGLPDGKSKVTAREMVTLATALQQSYPNLYPYFAQPDFEWNKIFQRNRNPLLGLDL 232

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA---LEL-ITSFLEKK 291
             DG+ TG+T   G++IV S+      +   + G+ + +ER ++A   LE  +T+F  ++
Sbjct: 233 GADGLATGFTEGEGYSIVASVERDGRRLFLALAGIASDKERTEEAKRVLEWGLTAFESRQ 292

Query: 292 TLKHQQ 297
               ++
Sbjct: 293 IFAEKE 298


>gi|302874917|ref|YP_003843550.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium cellulovorans
           743B]
 gi|307690464|ref|ZP_07632910.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cellulovorans
           743B]
 gi|302577774|gb|ADL51786.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium cellulovorans
           743B]
          Length = 403

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 114/209 (54%), Gaps = 6/209 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +  E + S ++ L   I VS+ A     S + L+     T E+ I  + 
Sbjct: 77  PASVTKIMTMLLAMEAIDSGRIKLTDTITVSENAKKMGGSSMILETGEVRTVEEIIKGIA 136

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A  E+I GSE+ F ++M+ K +++GM+NT +KN +GL     ++TA D ++
Sbjct: 137 IASGNDAAVAMAEYIGGSEENFVVMMNKKCEELGMKNTTFKNCTGLSADGHLSTAYDISL 196

Query: 197 LGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +   L K+ P   KY S     I + R     + NHNKL+      DG+KTG+T  + + 
Sbjct: 197 MSRELLKH-PTILKYSSIYMETISEGRKTPIELVNHNKLVRFFKGCDGLKTGFTSEAKYC 255

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           I  +       +++V+MG PT + R++ A
Sbjct: 256 ISATATRDGVRMLSVIMGAPTFKVRNRDA 284


>gi|226942990|ref|YP_002798063.1| D-Alanyl-D-Alanine carboxypeptidase [Azotobacter vinelandii DJ]
 gi|226717917|gb|ACO77088.1| D-Alanyl-D-Alanine carboxypeptidase [Azotobacter vinelandii DJ]
          Length = 404

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 132/251 (52%), Gaps = 7/251 (2%)

Query: 50  AKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           A P+ +S   +++D    Q+      E R P ASLTK+MT YI    ++  ++  +  + 
Sbjct: 49  APPQLASTAYLLMDAASGQVLIESNGEQRLPPASLTKLMTAYIATLEIKRGQIKESDLVT 108

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           VS+ A     S+++++  T  +    +  +I +S ND S A  E I+GSE  FA +M+  
Sbjct: 109 VSERAWRTGGSRMFIQVGTQVSVSDLLHGIIIQSGNDSSVALAEHIAGSEDAFADMMNAT 168

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
           A+++G+ NT + NA+GL      ++A D A L   +  + P +Y  ++ ++F + N    
Sbjct: 169 AQRLGLSNTHFMNATGLPHAEHYSSAHDMARLARAIIYDDPAHYAIYAQKEFFWNNIKQP 228

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N N LL +   +DG+KTG+T  +G+ +V S       ++AVV G  + Q R  +  +L+T
Sbjct: 229 NRNLLLWRDKTVDGLKTGHTEEAGYCLVASAVRDGQRLIAVVFGTKSEQARAAETQKLLT 288

Query: 286 ---SFLEKKTL 293
               F E +T 
Sbjct: 289 YGFRFFETQTF 299


>gi|261868788|ref|YP_003256710.1| DacC protein [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|293391084|ref|ZP_06635418.1| DacC protein [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|261414120|gb|ACX83491.1| DacC protein [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|290951618|gb|EFE01737.1| DacC protein [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 396

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 143/261 (54%), Gaps = 13/261 (4%)

Query: 37  LSIIMISMASELH----AKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYI 88
           L++ + +MA+E      A P+ ++   +++D N    +     D+ +YPASLTKMMT Y+
Sbjct: 18  LAVSLGAMAAEDVQFNIAVPEINAQTYVLMDYNSGAVLASLNPDQRQYPASLTKMMTSYV 77

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           + + ++  K+     + + +++        SK++L      +       +I  S ND   
Sbjct: 78  VGQAIKQGKIRNTDMVTIGESSWGHKFPGSSKMFLNLNQQVSVADLHRGIIIVSGNDACV 137

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E +SG+   F   M+   ++ G++NT +    GL + NQ ++ARD AI+G  + ++ 
Sbjct: 138 AMAEHVSGTVMNFVDTMNKYVEQFGLKNTYFTTVHGLDEDNQYSSARDMAIIGARIIRDL 197

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTS-LRYKDDPI 263
           P+ YK ++ + F +      N N LL +K  N+DG+KTG+T  +G+N+V S +   +  +
Sbjct: 198 PEEYKIYAEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTDKAGYNLVASAISPNNMRL 257

Query: 264 VAVVMGMPTSQERDQKALELI 284
           ++VVMG+PT + R+ ++ +L+
Sbjct: 258 ISVVMGVPTYKGREVESKKLL 278


>gi|170767905|ref|ZP_02902358.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii
           TW07627]
 gi|170123393|gb|EDS92324.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii
           TW07627]
          Length = 403

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 133/253 (52%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFK 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 94  ETDLVTIGNDAWATGNPVFRGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAIYK 213

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 214 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 273

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 274 FKGRETESKKLLT 286


>gi|281600032|gb|ADA73016.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Shigella flexneri
           2002017]
          Length = 427

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 133/253 (52%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 61  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFK 117

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 118 ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 177

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 178 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYK 237

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 238 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 297

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 298 FKGREAESKKLLT 310


>gi|125972794|ref|YP_001036704.1| penicillin-binding protein 6 [Clostridium thermocellum ATCC 27405]
 gi|256004983|ref|ZP_05429955.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           DSM 2360]
 gi|125713019|gb|ABN51511.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Clostridium thermocellum ATCC 27405]
 gi|255991052|gb|EEU01162.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           DSM 2360]
 gi|316940970|gb|ADU75004.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           DSM 1313]
          Length = 384

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 139/262 (53%), Gaps = 5/262 (1%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
           R++ ++  I F  ++    A         S+I+I+ +  Q+   K  D P  PAS+TK+M
Sbjct: 8   RSVSVLAVITFFVMMFQVKAFAQFESSAQSAILIEASTGQVLYEKNADVPMPPASITKIM 67

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL--KEKTYFTTEQGILALITRSAND 142
           TL + FE L+   +  + ++ +S+ A     SK++L   +K  F      ++++  SAND
Sbjct: 68  TLLLGFEALEKGLVKWDDEVIISEKAWRMEGSKMFLLVGDKAKFGEIMTGISVV--SAND 125

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
              A  E + GSE+ F  +M+ +AK++G+ NT + N++GL  +  + +ARD + L   L 
Sbjct: 126 GCVALAEHLYGSEEAFVQVMNTRAKELGLTNTNFANSNGLPAEGHVMSARDISTLARYLI 185

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           +N+P+  +  S  ++ Y N    N N LL      DG+KTG+T  +G+ IV + +     
Sbjct: 186 QNYPKILELESTTEYTYNNIRQFNRNPLLGVFPGADGLKTGWTEEAGYCIVGTAQQNGQR 245

Query: 263 IVAVVMGMPTSQERDQKALELI 284
           ++ VV+   + +ER +   EL+
Sbjct: 246 MIGVVLKTSSEKERSKAIQELL 267


>gi|42543137|pdb|1NZO|A Chain A, The Crystal Structure Of Wild Type Penicillin-Binding
           Protein 5 From E. Coli
 gi|46014978|pdb|1NZU|A Chain A, Wild-Type Penicillin-Binding Protein 5 From E. Coli
           Modified By Beta-Mercaptoethanol
 gi|71042191|pdb|1Z6F|A Chain A, Crystal Structure Of Penicillin-Binding Protein 5 From E.
           Coli In Complex With A Boronic Acid Inhibitor
 gi|197305030|pdb|3BEB|A Chain A, Crystal Structure Of E. Coli Penicillin-Binding Protein 5
           In Complex With A Peptide-Mimetic Penicillin
 gi|197305031|pdb|3BEC|A Chain A, Crystal Structure Of E. Coli Penicillin-Binding Protein 5
           In Complex With A Peptide-Mimetic Cephalosporin
 gi|326327867|pdb|3MZD|A Chain A, Structure Of Penicillin-Binding Protein 5 From E. Coli:
           Cloxacillin Acyl-Enzyme Complex
 gi|326327868|pdb|3MZE|A Chain A, Structure Of Penicillin-Binding Protein 5 From E.Coli:
           Cefoxitin Acyl- Enzyme Complex
 gi|326327869|pdb|3MZF|A Chain A, Structure Of Penicillin-Binding Protein 5 From E. Coli:
           Imipenem Acyl- Enzyme Complex
          Length = 363

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 133/253 (52%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 8   MIPGVPQIDAE---SYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFK 64

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 65  ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 124

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 125 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYK 184

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 185 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 244

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 245 FKGREAESKKLLT 257


>gi|148977058|ref|ZP_01813704.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium
           SWAT-3]
 gi|145963718|gb|EDK28979.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium
           SWAT-3]
          Length = 373

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 138/259 (53%), Gaps = 12/259 (4%)

Query: 37  LSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEY 92
           +S   I+  S + A P   +   ++ID N   +   K    +  PASLTK+MT Y+  + 
Sbjct: 2   VSTAAIAAPSIVPAPPSLGAKGYVLIDFNSGDVLVEKNAHTKLNPASLTKLMTSYVAGQE 61

Query: 93  LQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           ++   +  + ++ +S+ A  +N    SK++++  T          LI +S ND S A  E
Sbjct: 62  MKRGNISADDKVRISENAWAKNFPDSSKMFIEVNTDVAMMDLYRGLIIQSGNDASVAIAE 121

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            ++GS+  F  LM++ A  + ++NT + NA GL  ++  +T  D A+LG  + K+ P  Y
Sbjct: 122 QVAGSQDAFVDLMNSWATSLKLENTHFANAHGLDAEDLYSTPYDIALLGRAIIKDLPDVY 181

Query: 210 KYFSIRKFRYRNRIITNHNK---LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
             +S R F Y    IT HN+   L ++   +DG+KTGYT  +G+++ +S    +  ++AV
Sbjct: 182 GLYSERSFSYNG--ITQHNRNGLLRDRSLTVDGMKTGYTSGAGYSLASSATQGEMRLIAV 239

Query: 267 VMGMPTSQERDQKALELIT 285
           VMG  + + R+  + +L++
Sbjct: 240 VMGASSVKSRESDSKQLLS 258


>gi|323702537|ref|ZP_08114200.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532511|gb|EGB22387.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 405

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 130/233 (55%), Gaps = 6/233 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I++D N  Q+   K  + R P AS+TK+MT+ +I E     K+ L  ++  S+ A + 
Sbjct: 59  SAILMDYNSGQVLFQKDPDTRRPMASVTKLMTMLLICEAEAQGKIKLTDKVVASEHACSM 118

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+     T ++ ++++ T SAND S A  E I+GSE+ F  +M+ KA+ +G++N
Sbjct: 119 GGSQIFLEPGEQLTIKEMLISIATGSANDASVAMAEQIAGSEEAFVAMMNEKAQAMGLKN 178

Query: 174 TIYKNASGLHDKNQITTARDQA-ILGILLRKNFPQYYKYFSIRKFRYRNRI--ITNHNKL 230
           T + N +GL  +N  T+ARD A +L   LR  +P + +   I ++  R     + N NKL
Sbjct: 179 THFSNPTGLPVENHYTSARDMAKVLRECLR--YPVFREVSKIYEYDLRGGEFKLWNTNKL 236

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           L      D  KTG+T  + F +  S +     +++VV+G P  +   Q+ +++
Sbjct: 237 LKWYPGTDAGKTGWTNEAKFCLAASAKRDGLRLISVVLGCPMPKTHFQETMKI 289


>gi|301643955|ref|ZP_07243981.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           146-1]
 gi|301077690|gb|EFK92496.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           146-1]
          Length = 427

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 133/253 (52%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 61  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFK 117

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 118 ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 177

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 178 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYK 237

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 238 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 297

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 298 FKGREAESKKLLT 310


>gi|170021011|ref|YP_001725965.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           ATCC 8739]
 gi|193069040|ref|ZP_03049998.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019]
 gi|256023756|ref|ZP_05437621.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia sp.
           4_1_40B]
 gi|300951129|ref|ZP_07164994.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           116-1]
 gi|300959200|ref|ZP_07171279.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           175-1]
 gi|301028891|ref|ZP_07192063.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           196-1]
 gi|307137249|ref|ZP_07496605.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           H736]
 gi|331641134|ref|ZP_08342269.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H736]
 gi|1778549|gb|AAB40832.1| penicillin-binding protein 5 [Escherichia coli]
 gi|169755939|gb|ACA78638.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli ATCC
           8739]
 gi|192957584|gb|EDV88029.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019]
 gi|260450201|gb|ACX40623.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli DH1]
 gi|299878139|gb|EFI86350.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           196-1]
 gi|300314185|gb|EFJ63969.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           175-1]
 gi|300449584|gb|EFK13204.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           116-1]
 gi|323938394|gb|EGB34648.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1520]
 gi|323943047|gb|EGB39206.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E482]
 gi|323972087|gb|EGB67301.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TA007]
 gi|331037932|gb|EGI10152.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H736]
          Length = 427

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 133/253 (52%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 61  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFK 117

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 118 ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 177

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 178 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYK 237

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 238 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 297

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 298 FKGREAESKKLLT 310


>gi|330938277|gb|EGH41938.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 386

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 129/246 (52%), Gaps = 4/246 (1%)

Query: 41  MISMASELHAKPKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           M   A +L AK   + +++D  + N +     D+   PASLTK+MT YI    ++  ++ 
Sbjct: 28  MTPAAPQLAAK---AYVLMDATSGNVLVENNGDQRLAPASLTKLMTAYIATLEIRRGQIG 84

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            N  + +S+ A     S++++K  +  T    +  +I +S ND S A  E I+GSE  FA
Sbjct: 85  ENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAISEHIAGSEDAFA 144

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+  A  +GM N+ + N +GL +    ++A D AIL   +    P +Y  +S ++F +
Sbjct: 145 DMMNKTAADLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQKEFFW 204

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
                 N N LL +   +DG+KTG+T  +G+ +V+S       ++AVV G  + Q R  +
Sbjct: 205 NGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEQARAAE 264

Query: 280 ALELIT 285
             +L+T
Sbjct: 265 TQKLLT 270


>gi|110804719|ref|YP_688239.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella flexneri 5
           str. 8401]
 gi|110614267|gb|ABF02934.1| penicillin-binding protein 5 [Shigella flexneri 5 str. 8401]
          Length = 427

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 133/253 (52%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 61  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFK 117

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 118 ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 177

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 178 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYK 237

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 238 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 297

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 298 FKGREAESKKLLT 310


>gi|289675748|ref|ZP_06496638.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           syringae FF5]
 gi|330895583|gb|EGH27891.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330976833|gb|EGH76865.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 386

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 129/246 (52%), Gaps = 4/246 (1%)

Query: 41  MISMASELHAKPKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           M   A +L AK   + +++D  + N +     D+   PASLTK+MT YI    ++  ++ 
Sbjct: 28  MTPAAPQLAAK---AYVLMDATSGNVLVENNGDQRLAPASLTKLMTAYIATLEIRRGQIG 84

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            N  + +S+ A     S++++K  +  T    +  +I +S ND S A  E I+GSE  FA
Sbjct: 85  ENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAISEHIAGSEDAFA 144

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+  A  +GM N+ + N +GL +    ++A D AIL   +    P +Y  +S ++F +
Sbjct: 145 DMMNKTAADLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQKEFFW 204

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
                 N N LL +   +DG+KTG+T  +G+ +V+S       ++AVV G  + Q R  +
Sbjct: 205 NGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEQARAAE 264

Query: 280 ALELIT 285
             +L+T
Sbjct: 265 TQKLLT 270


>gi|167462561|ref|ZP_02327650.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus larvae
           subsp. larvae BRL-230010]
 gi|322381758|ref|ZP_08055712.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154146|gb|EFX46468.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 392

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 132/235 (56%), Gaps = 7/235 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I++D +   +   K  + + P AS+TK+MT+ +I E +    L ++ ++  S+ AA+ 
Sbjct: 42  SAILLDADTGTIISEKDKDAKLPPASITKIMTMLLIMEAVDKGTLKMDEKVRTSEYAASM 101

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+     T E+ +  +   S ND S A  E I+G+E+ F  +M+ +AK++GM+N
Sbjct: 102 GGSQIFLEPGEEMTVEEMLKGIAMASGNDASVAMAEKIAGTEEDFVRMMNERAKQLGMKN 161

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKN-----FPQYYKYFSIRKFRYRNRIITNHN 228
           T + N +GL  +N  +TA D A++   L K+     F   Y+ + +RK   +   + N N
Sbjct: 162 THFANCNGLPAENHYSTAYDIALMSRELLKHEKITAFTGAYQDY-LRKDSEKPFWLVNTN 220

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           KL+   +  DG+KTG+T    F +  + +  +  ++AVVMG P ++ R+ +  +L
Sbjct: 221 KLVRFYNGADGLKTGFTSEEKFCLAATAKRDNLRMIAVVMGEPDTKTRNAEVTKL 275


>gi|330959962|gb|EGH60222.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 386

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 129/246 (52%), Gaps = 4/246 (1%)

Query: 41  MISMASELHAKPKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           M   A +L AK   + +++D  + N +     D+   PASLTK+MT YI    ++  ++ 
Sbjct: 28  MTPAAPQLAAK---AYVLMDATSGNVLVENNGDQRLAPASLTKLMTAYIATLEIRRGQIG 84

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            N  + +S+ A     S++++K  +  T    +  +I +S ND S A  E I+GSE  FA
Sbjct: 85  ENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAISEHIAGSEDAFA 144

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+  A  +GM N+ + N +GL +    ++A D AIL   +    P +Y  +S ++F +
Sbjct: 145 DMMNKTAADLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQKEFFW 204

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
                 N N LL +   +DG+KTG+T  +G+ +V+S       ++AVV G  + Q R  +
Sbjct: 205 NGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEQARAAE 264

Query: 280 ALELIT 285
             +L+T
Sbjct: 265 TQKLLT 270


>gi|297529521|ref|YP_003670796.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. C56-T3]
 gi|297252773|gb|ADI26219.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. C56-T3]
          Length = 391

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 120/210 (57%), Gaps = 6/210 (2%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           EP  PAS+TK+MT+ ++ E +   KL  + ++  S+ AA+   S+++L+     T ++ +
Sbjct: 60  EPLPPASMTKIMTMLLVMEAIDEGKLSYDEKVRASEYAASMGGSQIFLEPGEEMTVDELL 119

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             +   SAND S A  E I+GSE+ F  +M+ KAK++G++NT + NA+GL  ++  ++A 
Sbjct: 120 RGIAIGSANDASVAMAEQIAGSEEAFVEMMNEKAKQLGLKNTHFANATGLPAEHHYSSAY 179

Query: 193 DQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRN 247
           D A++   L K +    KY S     +R+   +   + N N+L+     +DG+KTGYT  
Sbjct: 180 DMAMMARELLK-YEDITKYTSKYEDYLRENTDKKFWLVNTNRLVKFYPGVDGLKTGYTAE 238

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           + + +  + +     ++AVV G PT + R+
Sbjct: 239 AKYCLTATAKKNGMRVIAVVFGAPTPKSRN 268


>gi|56420846|ref|YP_148164.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus kaustophilus
           HTA426]
 gi|261417853|ref|YP_003251535.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC61]
 gi|319767335|ref|YP_004132836.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC52]
 gi|56380688|dbj|BAD76596.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
           [Geobacillus kaustophilus HTA426]
 gi|261374310|gb|ACX77053.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC61]
 gi|317112201|gb|ADU94693.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC52]
          Length = 391

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 120/210 (57%), Gaps = 6/210 (2%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           EP  PAS+TK+MT+ ++ E +   KL  + ++  S+ AA+   S+++L+     T ++ +
Sbjct: 60  EPLPPASMTKIMTMLLVMEAIDEGKLSYDEKVRASEYAASMGGSQIFLEPGEEMTVDELL 119

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             +   SAND S A  E I+GSE+ F  +M+ KAK++G++NT + NA+GL  ++  ++A 
Sbjct: 120 RGIAIGSANDASVAMAEQIAGSEEAFVEMMNEKAKQLGLKNTHFANATGLPAEHHYSSAY 179

Query: 193 DQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRN 247
           D A++   L K +    KY S     +R+   +   + N N+L+     +DG+KTGYT  
Sbjct: 180 DMAMMARELLK-YEDITKYTSKYEDYLRENTDKKFWLVNTNRLVKFYPGVDGLKTGYTAE 238

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           + + +  + +     ++AVV G PT + R+
Sbjct: 239 AKYCLTATAKKNGMRVIAVVFGAPTPKSRN 268


>gi|237798412|ref|ZP_04586873.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331021264|gb|EGI01321.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 386

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 129/246 (52%), Gaps = 4/246 (1%)

Query: 41  MISMASELHAKPKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           M   A +L AK   + +++D  + N +     D+   PASLTK+MT YI    ++  ++ 
Sbjct: 28  MTPAAPQLAAK---AYVLMDATSGNVLVENNGDQRLAPASLTKLMTAYIATLEIRRGQIG 84

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            N  + +S+ A     S++++K  +  T    +  +I +S ND S A  E I+GSE  FA
Sbjct: 85  ENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAISEHIAGSEDAFA 144

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+  A  +GM N+ + N +GL +    ++A D AIL   +    P +Y  +S ++F +
Sbjct: 145 DMMNKTAADLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQKEFFW 204

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
                 N N LL +   +DG+KTG+T  +G+ +V+S       ++AVV G  + Q R  +
Sbjct: 205 NGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEQARAAE 264

Query: 280 ALELIT 285
             +L+T
Sbjct: 265 TQKLLT 270


>gi|330969439|gb|EGH69505.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 386

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 129/246 (52%), Gaps = 4/246 (1%)

Query: 41  MISMASELHAKPKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           M   A +L AK   + +++D  + N +     D+   PASLTK+MT YI    ++  ++ 
Sbjct: 28  MTPAAPQLAAK---AYVLMDATSGNVLVENNGDQRLAPASLTKLMTAYIATLEIRRGQIG 84

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            N  + +S+ A     S++++K  +  T    +  +I +S ND S A  E I+GSE  FA
Sbjct: 85  ENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAISEHIAGSEDAFA 144

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+  A  +GM N+ + N +GL +    ++A D AIL   +    P +Y  +S ++F +
Sbjct: 145 DMMNKTAGDLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQKEFFW 204

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
                 N N LL +   +DG+KTG+T  +G+ +V+S       ++AVV G  + Q R  +
Sbjct: 205 NGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEQARAAE 264

Query: 280 ALELIT 285
             +L+T
Sbjct: 265 TQKLLT 270


>gi|312877868|ref|ZP_07737815.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795372|gb|EFR11754.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 386

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 132/240 (55%), Gaps = 5/240 (2%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+ AK   S+I++D +  ++   K   E   PAS+TK+MT+ +I E ++  ++ L+ ++ 
Sbjct: 38  EISAK---SAILVDFDTGRILYEKNSHEKLSPASITKIMTMILICEAIEKGRIKLSDRVV 94

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
            S+ A++   S++YLKE    T E+ + ++   SAND   A  E I+GS ++F  +M+ K
Sbjct: 95  ASQNASSLGGSQVYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYMMNKK 154

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILG-ILLRKNFPQYYKYFSIRKFRYRNRII 224
           AK++GM +T + N  GL  +N  T+A D AI+   LL+    + Y    +   R     +
Sbjct: 155 AKELGMLDTNFVNPYGLDAENHYTSAYDVAIMSRELLKHKIIRKYLTTWVDTIREGKFGL 214

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           TN NKL+       G+KTG T  + F +  S       ++AV+MG P S+ R  +A +L+
Sbjct: 215 TNTNKLVRFYRGCTGVKTGSTDKAKFCVSASALRNGLHLIAVIMGAPDSKTRFNEATKLL 274


>gi|332654526|ref|ZP_08420269.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium
           D16]
 gi|332516490|gb|EGJ46096.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium
           D16]
          Length = 383

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 71/209 (33%), Positives = 113/209 (54%), Gaps = 4/209 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MTL +I E L S ++     + VS  AA    S++YLKE    T  + I  + 
Sbjct: 58  PASVTKVMTLLLIMEALDSGRISREDVVTVSARAAGMGGSQVYLKEGEQMTVGELIKCIT 117

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A  E+++GSE  F   M+ +A+K+GM++T + N +GL     +TTA D A+
Sbjct: 118 VVSGNDATVAMAEYLAGSESAFVQQMNQRAQKLGMEDTNFVNCTGLPASGHVTTAYDIAL 177

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRI--ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
           +   L  N P   +Y +I     R+    +TN N+L+       G+KTG T ++ + +  
Sbjct: 178 MSRELILNHPGIREYTTIWMDSIRDGAFGLTNTNRLVRFYEGATGLKTGSTDSALYCMSA 237

Query: 255 SLRYKDDPIVAVVMGMPTSQER--DQKAL 281
           +       ++AVVM  PT+ +R  D KA+
Sbjct: 238 TAERDGMELIAVVMAAPTAADRFEDAKAM 266


>gi|304397023|ref|ZP_07378902.1| Beta-lactamase [Pantoea sp. aB]
 gi|304355172|gb|EFM19540.1| Beta-lactamase [Pantoea sp. aB]
          Length = 420

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 141/263 (53%), Gaps = 12/263 (4%)

Query: 34  ILFLSIIMISMASELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYII 89
           +L L+ I +  A +  A P   +   I+ID    + +T    D+   PASLTKMMT Y++
Sbjct: 38  LLILAPISV-FAEQAPAAPGIDAKAWILIDYASGKVLTESSADQRLDPASLTKMMTSYVV 96

Query: 90  FEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDV 143
            + +++ K+  +  + V + A AT NP     S ++LK        +    ++ +S ND 
Sbjct: 97  GQAIKAGKIKPDDLVTVGQDAWATGNPKLRGSSLMFLKPGDRIPVHELNKGIVIQSGNDA 156

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
             A  ++++GS+  F  LM+N  K +G+QNT +    GL  + Q +TARD A++   L +
Sbjct: 157 CIALADYVAGSQDSFIGLMNNYVKALGLQNTHFMTVHGLDAEGQYSTARDMALIAQALIR 216

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           + P+ Y     ++F + N    N N+LL   +  +DG+KTG+T  +G N+V S    D  
Sbjct: 217 DVPEEYALNKEKEFTFNNIRQINRNRLLWSTNLKVDGVKTGHTSGAGNNLVASATEGDMR 276

Query: 263 IVAVVMGMPTSQERDQKALELIT 285
           +++VV+G  +   R +++ +L+T
Sbjct: 277 LISVVLGTASDAIRFRESEKLLT 299


>gi|330953021|gb|EGH53281.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae Cit 7]
          Length = 386

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 129/246 (52%), Gaps = 4/246 (1%)

Query: 41  MISMASELHAKPKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           M   A +L AK   + +++D  + N +     D+   PASLTK+MT YI    ++  ++ 
Sbjct: 28  MTPAAPQLAAK---AYVLMDATSGNVLVENNGDQRLAPASLTKLMTAYIATLEIRRGQIG 84

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            N  + +S+ A     S++++K  +  T    +  +I +S ND S A  E I+GSE  FA
Sbjct: 85  ENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAISEHIAGSEDAFA 144

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+  A  +GM N+ + N +GL +    ++A D AIL   +    P +Y  +S ++F +
Sbjct: 145 DMMNKTAADLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQKEFFW 204

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
                 N N LL +   +DG+KTG+T  +G+ +V+S       ++AVV G  + Q R  +
Sbjct: 205 NGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEQARAAE 264

Query: 280 ALELIT 285
             +L+T
Sbjct: 265 TQKLLT 270


>gi|312793772|ref|YP_004026695.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180912|gb|ADQ41082.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 386

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 132/240 (55%), Gaps = 5/240 (2%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+ AK   S+I++D +  ++   K   E   PAS+TK+MT+ +I E ++  ++ L+ ++ 
Sbjct: 38  EISAK---SAILVDFDTGRILYEKNSHEKLSPASITKIMTMILICEAIEKGRIKLSDRVV 94

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
            S+ A++   S++YLKE    T E+ + ++   SAND   A  E I+GS ++F  +M+ K
Sbjct: 95  ASQNASSLGGSQVYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYMMNKK 154

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILG-ILLRKNFPQYYKYFSIRKFRYRNRII 224
           AK++GM +T + N  GL  +N  T+A D AI+   LL+    + Y    +   R     +
Sbjct: 155 AKELGMLDTNFVNPYGLDAENHYTSAYDVAIMSRELLKHKIIRKYLTTWVDTIREGKFGL 214

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           TN NKL+       G+KTG T  + F +  S       ++AV+MG P S+ R  +A +L+
Sbjct: 215 TNTNKLVRFYRGCTGVKTGSTDKAKFCVSASALRNGLHLIAVIMGAPDSKTRFNEATKLL 274


>gi|293396914|ref|ZP_06641188.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM
           4582]
 gi|291420385|gb|EFE93640.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM
           4582]
          Length = 356

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 123/218 (56%), Gaps = 11/218 (5%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQ 130
           PASLTK+M+ Y+I + +++ K+     + V K A AT NP     S +++K        +
Sbjct: 20  PASLTKIMSSYVIGQAIKAGKIKPTDLVTVGKDAWATGNPVLRGSSLMFIKPGDRVPVME 79

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               ++ +S ND S A  ++++GS++ F  LM+  AK +G+QNT +    GL  + Q +T
Sbjct: 80  LNKGIVIQSGNDASIALADYVAGSQESFVSLMNGYAKHLGLQNTHFLTVHGLDAEGQFST 139

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSG 249
           ARD A+L   L ++ P  Y     ++F +      N N+LL   + ++DGIKTGYT  +G
Sbjct: 140 ARDMALLSQALIRDVPDEYALHKEKEFTFNKIRQVNRNRLLWSSNLSVDGIKTGYTSGAG 199

Query: 250 FNIVTSLRYKDDP--IVAVVMGMPTSQERDQKALELIT 285
            N+V S    D P  +++VV+G P+ + R  ++ +L+T
Sbjct: 200 HNLVAS--ATDGPMRLISVVLGAPSDRVRFSESEKLLT 235


>gi|86144247|ref|ZP_01062579.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio sp. MED222]
 gi|85837146|gb|EAQ55258.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio sp. MED222]
          Length = 381

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 128/236 (54%), Gaps = 9/236 (3%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           ++ID N   +   K    +  PASLTK+MT Y+  + ++   +  + Q+ +S+ A  +N 
Sbjct: 33  VLIDFNSGDVLVEKNAHTKLNPASLTKLMTSYVAGQEMKRGNISADDQVRISENAWAKNF 92

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++++  T          LI +S ND S A  E ++GS+  F  LM++ A  + ++
Sbjct: 93  PDSSKMFIEVNTDVAMMDLYRGLIIQSGNDASVAIAEHVAGSQDAFVDLMNSWAASLKLE 152

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK--- 229
           NT + NA GL   +  +T  D A+LG  + ++ P  Y  +S R F Y    IT HN+   
Sbjct: 153 NTHFANAHGLDADDLYSTPYDIALLGRAIIRDLPDVYGLYSERSFSYNK--ITQHNRNGL 210

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           L ++   +DG+KTGYT  +G+++ +S    +  ++AVVMG  + + R+  + +L++
Sbjct: 211 LRDRSLTVDGMKTGYTSGAGYSLASSATQGEMRLIAVVMGASSVKSRESDSKQLLS 266


>gi|288934486|ref|YP_003438545.1| beta-lactamase [Klebsiella variicola At-22]
 gi|290508688|ref|ZP_06548059.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55]
 gi|288889195|gb|ADC57513.1| Beta-lactamase [Klebsiella variicola At-22]
 gi|289778082|gb|EFD86079.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55]
          Length = 387

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 124/238 (52%), Gaps = 8/238 (3%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT 112
           S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + V K A A 
Sbjct: 37  SWVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITFDDIVTVGKDAWAK 96

Query: 113 QNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
            NP     S ++LK     +       LI  S ND   A  ++++G + +F  LM+   +
Sbjct: 97  GNPVFDGSSLMFLKPGDRVSVRDLSRGLIVDSGNDACVALADYVAGGQPQFVALMNQYVE 156

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           K+ +Q+T ++   GL    Q ++A D A+L   +    P  Y  +S +   +      N 
Sbjct: 157 KLHLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPDVYHMYSQKSLTWNGITQQNR 216

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  + + R+Q+A +L+
Sbjct: 217 NGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSPKGREQQAAKLL 274


>gi|312127393|ref|YP_003992267.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777412|gb|ADQ06898.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 386

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 132/240 (55%), Gaps = 5/240 (2%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+ AK   S+I++D +  ++   K    + P AS+TK+MT+ +I E ++  ++ L+ ++ 
Sbjct: 38  EISAK---SAILVDFDTGKILYEKNSHEKLPPASITKIMTMILICEAIEKGRIKLSDRVI 94

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
            S+ A++   S++YLKE    T E+ + ++   SAND   A  E I+GS ++F  +M+ K
Sbjct: 95  ASQNASSLGGSQIYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYMMNKK 154

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILG-ILLRKNFPQYYKYFSIRKFRYRNRII 224
           AK++GM +T + N  GL  +N  T+A D AI+   LL+    + Y    +   R     +
Sbjct: 155 AKELGMLDTNFVNPYGLDAENHYTSAYDVAIMSRELLKHKIIRKYLTTWVDTIREGKFGL 214

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           TN NKL+       G+KTG T  + F +  S       ++AV+MG P S+ R  +A +L+
Sbjct: 215 TNTNKLVRFYRGCTGVKTGSTDKAKFCVSASALRNGLHLIAVIMGAPDSKTRFNEATKLL 274


>gi|295109899|emb|CBL23852.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162]
          Length = 394

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 152/297 (51%), Gaps = 39/297 (13%)

Query: 25  QRNIQLMGKILFLSIIMI------------SMASELHAKPKYSSIVIDVNKNQMTGFKQD 72
           +R++++ G  LFL I MI            S++ E+ A    S I+++V   ++  +++D
Sbjct: 3   KRHLRITG--LFLIICMILSTIFPVRAETESISPEILAA---SGILMEVETGKIL-YEKD 56

Query: 73  E--PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
               R PAS+TK+MTL +IFE L S KL LN  +  S  A +   S+++L+E    + E 
Sbjct: 57  SNTRRCPASVTKVMTLLLIFEQLDSGKLSLNDTVTTSAHAKSMGGSQVFLEEGEQQSVET 116

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ-IT 189
            I  ++  S ND S A  E I+GSE+ F   M+ +A+++GM+NT + +  GL D ++  T
Sbjct: 117 MIKCIVIASGNDASVAMAEHIAGSEQSFVNRMNQRAEELGMKNTHFVDCCGLTDSDEHYT 176

Query: 190 TARDQAILGILLRKNFPQYYKYFSI-------------RKFRYRNRIITNHNKLLNKMHN 236
           +A D A++   L +  PQ ++Y SI             +KF      +TN N+L+     
Sbjct: 177 SAYDIALMSRELIRKHPQIFEYSSIWMENITHVTAQGTKKFG-----LTNTNRLIRTYPG 231

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
             G+KTG T  + F +          +++VVM  P  + R + A  L+    ++ +L
Sbjct: 232 CKGLKTGSTSKAKFCLSAVAERDGLSLLSVVMAAPDYKARLKDASALLDYGFDRCSL 288


>gi|312622222|ref|YP_004023835.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202689|gb|ADQ46016.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 386

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 131/240 (54%), Gaps = 5/240 (2%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+ AK   S+I++D +  ++   K    + P AS+TK+MT+ +I E ++  K+ L+ ++ 
Sbjct: 38  EISAK---SAILVDFDTGKILYEKNSHEKLPPASITKIMTMILICEAIEKGKIKLSDKVV 94

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
            S+ A++   S++YLKE    T E+ + ++   SAND   A  E I+GS ++F  +M+ K
Sbjct: 95  ASQNASSLGGSQVYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYMMNKK 154

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILG-ILLRKNFPQYYKYFSIRKFRYRNRII 224
           AK+ GM +T + N  GL  +N  T+A D AI+   LL+    + Y    +   R     +
Sbjct: 155 AKEFGMLDTNFVNPYGLDAENHYTSAYDVAIMSRELLKHKIIRKYLTTWVDTIREGKFGL 214

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           TN NKL+       G+KTG T  + F +  S       ++AV+MG P S+ R  +A +L+
Sbjct: 215 TNTNKLVRFYRGCTGVKTGSTDKAKFCVSASALRNGLHLIAVIMGAPDSKTRFNEATKLL 274


>gi|160942970|ref|ZP_02090208.1| hypothetical protein FAEPRAM212_00447 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445664|gb|EDP22667.1| hypothetical protein FAEPRAM212_00447 [Faecalibacterium prausnitzii
           M21/2]
          Length = 410

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 130/236 (55%), Gaps = 3/236 (1%)

Query: 52  PKYSSIVID-VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  ++I+ID  +   +     D+    AS+TK+MTL + FE + + +L ++T +PVS+ A
Sbjct: 58  PCRAAILIDQTSGTVLYEMNADQTMPIASITKVMTLLLTFEAVHAGRLTMDTAVPVSEHA 117

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S+++L+    FT ++ + A+   SAND + A  E + GSE  F   M+ +A ++G
Sbjct: 118 YHMGGSQIWLEPGEQFTLDEMLKAVCVSSANDAAVAVAELVGGSEPAFVQQMNARAAELG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIITNHN 228
           M++T ++NA GL  +  ++TARD AI+   +    P+   Y  I     R     + N N
Sbjct: 178 MEHTTFRNACGLDTEGHLSTARDVAIMSRTILTTCPEVLHYTGIWTDTLRGGQTQLVNTN 237

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           KLL + + I G+KTG T  +G  I  S       ++AVV+G P+S+ER + A  L+
Sbjct: 238 KLLRRYNGITGLKTGTTGGAGVCITASATRDGLNLIAVVLGAPSSKERFEAATTLL 293


>gi|119470843|ref|ZP_01613454.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Alteromonadales bacterium TW-7]
 gi|119446070|gb|EAW27349.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Alteromonadales bacterium TW-7]
          Length = 390

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 114/207 (55%), Gaps = 6/207 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I   ++   +     + +S+ A  +N    SK++++     + ++   
Sbjct: 65  PASLTKMMTSYVIGTEIKVGNIAPTDMVTISEKAWAKNFPESSKMFIEVGKQISVDELNH 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E I+GSE  FA LM+  A K+GM N+ + N+ GL      TT RD
Sbjct: 125 GIIIQSGNDACVAMSEHIAGSESAFADLMNAHAAKLGMTNSHFINSHGLDTDEHYTTPRD 184

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A L   L ++ P+ Y  +  + + Y      N N LL ++  ++DGIKTG+T  +G+++
Sbjct: 185 MATLSAALIRDVPEEYAIYKEKSYTYNGIKQYNRNSLLWDESLDVDGIKTGHTSEAGYSL 244

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQK 279
           VTS       ++AVVMG  TS ER +K
Sbjct: 245 VTSATKNGMRLIAVVMG--TSSERARK 269


>gi|312135356|ref|YP_004002694.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor
           owensensis OL]
 gi|311775407|gb|ADQ04894.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           owensensis OL]
          Length = 384

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 132/240 (55%), Gaps = 5/240 (2%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+ AK   S+I++D +  ++   K    + P AS+TK+MT+ +I E ++  ++ L+ ++ 
Sbjct: 36  EISAK---SAILVDFDTGKILYEKNSHEKLPPASITKIMTMILICEAIEKGRIKLSDKVI 92

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
            S+ A++   S++YLKE    T E+ + ++   SAND   A  E I+GS ++F  +M+ K
Sbjct: 93  ASQNASSLGGSQIYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYIMNKK 152

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILG-ILLRKNFPQYYKYFSIRKFRYRNRII 224
           AK++GM +T + N  GL  +N  T+A D AI+   LL+    + Y    +   R     +
Sbjct: 153 AKELGMLDTNFVNPYGLDAENHYTSAYDVAIMSRELLKHKIIRKYLTTWVDTIREGKFGL 212

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           TN NKL+       G+KTG T  + F +  S       ++AV+MG P S+ R   A++L+
Sbjct: 213 TNTNKLVRFYKGCTGVKTGSTDKAKFCVSASALRNGLHLIAVIMGAPDSKTRFNDAVKLL 272


>gi|325265744|ref|ZP_08132433.1| D-alanyl-D-alanine carboxypeptidase DacA [Kingella denitrificans
           ATCC 33394]
 gi|324982875|gb|EGC18498.1| D-alanyl-D-alanine carboxypeptidase DacA [Kingella denitrificans
           ATCC 33394]
          Length = 489

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 119/216 (55%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           P  PASLT +M  Y+ F+ L ++ +    +  VS+ A     ++++L+      T   + 
Sbjct: 165 PIEPASLTHLMVAYLAFKALDAQTITPKQEWTVSENAWKSAGNRMFLERGGKANTIDLLH 224

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            ++  S ND +    E ++GSE  F   M+ +A+++GM+ T ++N +GLH    +++ +D
Sbjct: 225 GMLILSGNDAALTLAEGMAGSESAFVAQMNAEAERLGMRQTHFENVTGLHSPKHVSSVQD 284

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
             IL   L ++FP YY+ F+ + F Y      NHN LL +  ++DG+K GY+  +G++++
Sbjct: 285 LLILSQALLRDFPDYYQIFAKKTFTYNKITQPNHNLLLFRNDDVDGLKAGYSDIAGYHLI 344

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           T        I ++V+G  +++ R  ++ +L+   LE
Sbjct: 345 TGSHRNGRRIFSIVIGASSNEARAIESRKLLNYALE 380


>gi|295103490|emb|CBL01034.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 410

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 130/236 (55%), Gaps = 3/236 (1%)

Query: 52  PKYSSIVID-VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  ++I+ID  +   +     D+    AS+TK+MTL + FE + + +L ++T +PVS+ A
Sbjct: 58  PCRAAILIDQTSGTVLYEMNADQTMPIASITKVMTLLLTFEAVHAGRLTMDTAVPVSEHA 117

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S+++L+    FT ++ + A+   SAND + A  E + GSE  F   M+ +A ++G
Sbjct: 118 YHMGGSQIWLEPGEQFTLDEMLKAICVSSANDAAVAVAELVGGSEPAFVQQMNARAAELG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIITNHN 228
           M++T ++NA GL  +  ++TARD AI+   +    P+   Y  I     R     + N N
Sbjct: 178 MEHTTFRNACGLDTEGHLSTARDVAIMSRTILTTCPEVLHYTGIWTDTLRGGQTQLVNTN 237

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           KLL + + I G+KTG T  +G  I  S       ++AVV+G P+S+ER + A  L+
Sbjct: 238 KLLRRYNGITGLKTGTTGGAGVCITASATRDGLNLIAVVLGAPSSKERFEAATTLL 293


>gi|158423796|ref|YP_001525088.1| D-alanyl-D-alanine carboxypeptidase [Azorhizobium caulinodans ORS
           571]
 gi|158330685|dbj|BAF88170.1| D-alanyl-D-alanine carboxypeptidase [Azorhizobium caulinodans ORS
           571]
          Length = 426

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 114/213 (53%), Gaps = 5/213 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYFTTEQG 131
           P  + K+MT  +IF+ +++ K+ L+T   VS+ A          + +++  K+       
Sbjct: 85  PGGIVKIMTAAVIFDQIRAGKITLDTPFYVSENAWRRGGGPSGGAAMFVPVKSQVRVGDL 144

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +   +  S ND + A  E +SG+E +FA  M+ KA ++GM  + ++NA+G  D +Q T A
Sbjct: 145 LQGALVVSGNDAAIALAEGLSGTESEFAQRMNAKAAELGMSGSQFRNATGFADPDQFTNA 204

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           RD A+L   + +N P+ YK F++    +      N N LLN     DG+   + +++G++
Sbjct: 205 RDMAVLARSIIRNDPELYKIFAVPDIEWSKIKQRNRNTLLNAGIGADGLHMSWVKDAGYH 264

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +V S    +  ++ VVMG  T +ER ++A  L+
Sbjct: 265 LVGSAVQGNQRLIVVVMGAKTEKERLEEARRLL 297


>gi|188582286|ref|YP_001925731.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi
           BJ001]
 gi|179345784|gb|ACB81196.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi
           BJ001]
          Length = 418

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 124/228 (54%), Gaps = 8/228 (3%)

Query: 56  SIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           +I++D     +  F++  DEP  PAS+ K+MT  I+F  ++  +L ++T+  V++ A   
Sbjct: 42  AILVDAESGSVL-FEKAADEPFSPASMAKLMTAEIVFRAIKEGRLSMDTEFTVTEDAWRR 100

Query: 111 --ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
             A    S ++ +  +       +  LI +S ND +    E ++G+E+ FA +M+ +AK+
Sbjct: 101 GGAGGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDAAITIAENMAGTEEAFAGMMNQRAKE 160

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           IG+  + ++NA+G    +Q  TARD A +   L  ++P++YK +S R+F +      N N
Sbjct: 161 IGLTRSTFRNATGYSAPDQKVTARDMARIAQHLIDSYPEFYKIYSEREFTWNKIKQQNRN 220

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
            LL      DG+KTGY   SG+ +  S       ++ VV G+ T+++R
Sbjct: 221 PLLTLDIGADGLKTGYLEESGYALTGSAVQNGQRLIMVVSGLKTARDR 268


>gi|332094304|gb|EGI99355.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella boydii 5216-82]
          Length = 403

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 127/239 (53%), Gaps = 8/239 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT 112
           S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K      + +   A AT
Sbjct: 48  SYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWAT 107

Query: 113 QNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
            NP     S ++LK        Q I  +  +S ND   A  +F +GS+  F  LM++   
Sbjct: 108 GNPVFKGSSLMFLKPGMQVPVYQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVN 167

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
            +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  +  ++F +      N 
Sbjct: 168 ALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNR 227

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T
Sbjct: 228 NGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLT 286


>gi|17942531|pdb|1HD8|A Chain A, Crystal Structure Of A Deacylation-Defective Mutant Of
           Penicillin-Binding Protein 5 At 2.3 A Resolution
 gi|28374028|pdb|1NJ4|A Chain A, Crystal Structure Of A Deacylation-Defective Mutant Of
           Penicillin-Binding Protein 5 At 1.9 A Resolution
 gi|61679891|pdb|1SDN|A Chain A, Crystal Structure Of A Deacylation-Defective Mutant Of
           Penicillin-Binding Protein 5 Modified By Mercury
          Length = 363

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 133/253 (52%), Gaps = 11/253 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 8   MIPGVPQIDAE---SYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFK 64

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 65  ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRDINLQSGNDACVAMADFAAG 124

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 125 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYK 184

Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 185 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 244

Query: 273 SQERDQKALELIT 285
            + R+ ++ +L+T
Sbjct: 245 FKGREAESKKLLT 257


>gi|67906493|gb|AAY82600.1| predicted penicillin-binding protein 6 precursor [uncultured
           bacterium MedeBAC35C06]
          Length = 380

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 125/228 (54%), Gaps = 4/228 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT Y++ + + +  ++LN  + +S+ A     SK++++     + E  +  +I
Sbjct: 55  PASMTKIMTGYVVADQIGNDLINLNDSVLISERAWRMGGSKMFIEAGKRVSVEDLLKGVI 114

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E+  G+E+ F  LM+  A+ +GM NT + N++GL  +   ++A+D A 
Sbjct: 115 IQSGNDASVALAEYSGGTEEGFVDLMNAYAQSLGMNNTTFLNSTGLPAEGHYSSAKDLAY 174

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L       FP+ Y  +  + F + +    N NKLL +  + DG+KTG+T ++G+ +V S 
Sbjct: 175 LTSNFINKFPEIYSLYKEKSFEFNSIKQLNRNKLLWRDDSSDGVKTGHTESAGYCLVGSA 234

Query: 257 RYKDDPIVAVVMGMPTSQER---DQKALELITSFLE-KKTLKHQQTHR 300
           +     ++ VV G  + ++R    Q+ LE    F   ++ LK  Q ++
Sbjct: 235 KRGGMRLITVVAGSSSDKKRFDDTQRLLEYGFRFFSTQEVLKKDQVYK 282


>gi|322833272|ref|YP_004213299.1| Beta-lactamase [Rahnella sp. Y9602]
 gi|321168473|gb|ADW74172.1| Beta-lactamase [Rahnella sp. Y9602]
          Length = 403

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 137/251 (54%), Gaps = 12/251 (4%)

Query: 44  MASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +A +++AK   S +++D N  + +T    D    PASL+K+M  Y++ + ++S K+  + 
Sbjct: 34  VAPQINAK---SWVLMDYNSGKILTESNPDARLDPASLSKIMVSYVVGQAIKSGKIKSDD 90

Query: 103 QIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
            + V   A AT NP     S ++LK        +    ++ +S ND S A  +F++GS+ 
Sbjct: 91  LVSVGNDAWATGNPVLRGSSLMFLKPGDRVPVSELNKGIVIQSGNDASIALADFVAGSQD 150

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F  LM+  A+++ +QNT +K   GL    Q T+A D A+L   L ++ P  Y     ++
Sbjct: 151 SFVNLMNRYAEQLKLQNTHFKTVHGLDADGQYTSATDMALLSQALIRDTPDEYALHKEKE 210

Query: 217 FRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQ 274
           F + +    N N+LL   + N+DGIKTGYT  +G+N+V+S        ++AVVMG P+ +
Sbjct: 211 FTFNHIKQINRNRLLWSSNLNVDGIKTGYTSGAGYNLVSSASDSTGMRLIAVVMGAPSDR 270

Query: 275 ERDQKALELIT 285
            R  ++  L+T
Sbjct: 271 IRFNESESLLT 281


>gi|325265494|ref|ZP_08132216.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
 gi|324029273|gb|EGB90566.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
          Length = 423

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 117/221 (52%), Gaps = 8/221 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D  R PAS+TK+MT+ +IF+ L   K+ L  Q+  S+ AA+   S+++L+     T +  
Sbjct: 90  DTARPPASVTKIMTMLLIFDALADGKIKLEDQVTTSEFAASMGGSQVFLEPGETQTVDTM 149

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +   SAND   A  E+I G+E++F   M+ +AK +GM+NT + N +GL     +TTA
Sbjct: 150 LKCISVASANDACVAMAEYICGNEEEFVKQMNERAKGLGMENTHFVNCNGLDVDGHVTTA 209

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--------ITNHNKLLNKMHNIDGIKTG 243
           RD A++   +   +PQ + Y  I      +          +TN NKL+ +     G+KTG
Sbjct: 210 RDIALMSREMITKYPQIHDYCMIWMENITHTTKKGTTEFGLTNTNKLVRQYEYATGLKTG 269

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            T  + F +  + +  D  ++AV+M    S+ R + A  L+
Sbjct: 270 STGLAKFCVSATAKKNDIEMIAVIMAAGDSKARFKDATTLL 310


>gi|225018728|ref|ZP_03707920.1| hypothetical protein CLOSTMETH_02678 [Clostridium methylpentosum
           DSM 5476]
 gi|224948456|gb|EEG29665.1| hypothetical protein CLOSTMETH_02678 [Clostridium methylpentosum
           DSM 5476]
          Length = 395

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 137/246 (55%), Gaps = 5/246 (2%)

Query: 43  SMASELHAK-PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           ++A+++ A  P  S I+++ +  + ++    DE   PAS+TK+M + ++ E + +  + L
Sbjct: 34  TVAADISAGIPAKSYILMEASTGKVLSESNADEQMAPASITKIMVMLLLMERIDAGTVTL 93

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
           +  +  S+ A +   ++++L+     +    + A    SAND + A  E+++GSE+ FA 
Sbjct: 94  DDMVTTSEHANSMGGTQIWLEVGEQMSVNDLLKATAVNSANDAAVALAEYMAGSEEAFAE 153

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI--RKFR 218
           LM+ +AK++GM NT +KNA+GL     ++TARD A++   L K+ P+  +Y SI     R
Sbjct: 154 LMNQRAKELGMVNTTFKNATGLDADGHLSTARDIALMTQELLKH-PKITEYTSIYMDSLR 212

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                + N NK++      +G+KTG T ++G  +  +       +++V MG  TS+ER Q
Sbjct: 213 DGTTGLVNTNKMVRFYEGCNGMKTGTTDDAGSCLSCTATRDGMTLISVSMGSTTSKERFQ 272

Query: 279 KALELI 284
            A  L+
Sbjct: 273 SARTLL 278


>gi|138895883|ref|YP_001126336.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196248772|ref|ZP_03147472.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16]
 gi|134267396|gb|ABO67591.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196211648|gb|EDY06407.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16]
          Length = 391

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 125/228 (54%), Gaps = 11/228 (4%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +I E +   KL  + ++  S+ AA+   S+++L+     T ++ + A+ 
Sbjct: 64  PASMTKIMTMLLIMEAIDEGKLSYDEKVRTSEYAASMGGSQIFLEPGEEMTVDELLRAIA 123

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             SAND S A  E I+GSE+ F  +M+ KAK++G++ T + N +GL  +   ++A D AI
Sbjct: 124 IGSANDASVAMAERIAGSEEAFVEMMNEKAKELGLKETKFANTTGLPAEGHYSSAYDMAI 183

Query: 197 LGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +   L K +    KY S     +R+   +   + N N+L+     +DG+KTG+T  +G+ 
Sbjct: 184 MARELLK-YEGITKYTSKYEDYLRENTDKKFWLVNTNRLVKFYPGVDGLKTGFTSEAGYC 242

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTH 299
           +  + +     ++AVV G PT + R+ +    IT  L+     H Q H
Sbjct: 243 LTATAKKNGMRVIAVVFGAPTPKSRNAQ----ITKMLD-YAFHHYQAH 285


>gi|209549400|ref|YP_002281317.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209535156|gb|ACI55091.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 431

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 115/223 (51%), Gaps = 11/223 (4%)

Query: 63  KNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSK 117
           KN+  GF       PASL K+MT+ ++F+ +   ++  +T+ PVS+ A     A    + 
Sbjct: 84  KNEDQGFS------PASLAKLMTMDLVFDAVTKGQITFDTEYPVSEYAWRTGGAPSRTAT 137

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           ++   K+    E  I  +  + AND      E ++GSE++FA  M+ +A+++GM+   + 
Sbjct: 138 MFASLKSRVRVEDLIKGVAIQGANDSCIILAEGMAGSEQQFAESMTRRARELGMEKAEFG 197

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNI 237
           N++GL D     TAR+   L   L+K++P  Y YF+   F +      N N LL      
Sbjct: 198 NSTGLPDGKSKVTAREMVTLATALQKSYPNLYPYFAQPDFEWNKIFQRNRNPLLGLDLGA 257

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           DG+ TG+T   G++IV S+      +   + G+ + +ER ++A
Sbjct: 258 DGLATGFTEGEGYSIVASVERDGRRLFLALAGVASDKERTEEA 300


>gi|150016747|ref|YP_001309001.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903212|gb|ABR34045.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 396

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 143/283 (50%), Gaps = 33/283 (11%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   PAS+TK+MT+ I  E + S K+ L+ ++  S+ A     S + L      T E+ 
Sbjct: 65  DEKFAPASVTKIMTMLITMEGVDSGKIKLDDKVTCSENAKKMGGSTMLLDTGEIRTVEEL 124

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +   S ND + A  E++ G+E++F  +M+ +A+++GM NT +KN +GL     ++TA
Sbjct: 125 LKGVAIASGNDAAVALAEYLGGTEQEFVNMMNKRAQELGMVNTTFKNCNGLPADGHMSTA 184

Query: 192 RDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           +D AI+   L K+ P+  KY       I + R     + NHNKL+      DG+KTG+T 
Sbjct: 185 KDIAIMSKELLKH-PKVLKYTGTYMDNISEGRKSPIELVNHNKLVRFFEGCDGLKTGFTD 243

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA--------------------LELITS 286
            + + I  +       +++V+MG PT + R++ A                     E+   
Sbjct: 244 EAKYCISATATRNGVRMLSVIMGAPTYKIRNRDAGVLLNYGFSKYEGKKLVSKDEEIDKV 303

Query: 287 FLEKKTLKHQQTHRKDNLS-------STSLKKSLMIKKLKRTY 322
           +++++T K      KD+L+       +  L+K ++I +L++ Y
Sbjct: 304 YMDEQTDKFFMAMAKDDLNVILPKGDNKDLEKKIVIDELRKEY 346


>gi|297170270|gb|ADI21307.1| D-alanyl-D-alanine carboxypeptidase [uncultured gamma
           proteobacterium HF0010_09F21]
          Length = 381

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 116/210 (55%), Gaps = 7/210 (3%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-SKLYLKEKT 124
           +  F ++E    ASLTK+MT Y++ + ++   + +  + P     A Q P S+++++E T
Sbjct: 43  IASFNENESVEVASLTKLMTSYVVADQIKQGYISMEDE-PTISVKAWQTPGSQMFIREGT 101

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
                  +  ++  S ND S A  E I+GSE+ F  LM   A  +G++N+ + N+SGL D
Sbjct: 102 KVKVSDLVKGMVIISGNDASVALAEHIAGSEENFVYLMDQYAVDLGLRNSDFNNSSGLPD 161

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR--NRIIT---NHNKLLNKMHNIDG 239
            N +++A D A L   + ++FP +Y+ +  ++F Y      +    N N+LL+     DG
Sbjct: 162 PNNVSSALDLAKLTGAIIRDFPDHYQIYKEKEFSYSAPGEYVAPQPNRNRLLHLDDMFDG 221

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           +KTGYTR +G  +V S    D  ++AVV+G
Sbjct: 222 VKTGYTRAAGHCLVGSSTRDDMRLIAVVLG 251


>gi|218289604|ref|ZP_03493824.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240254|gb|EED07437.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 414

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 123/235 (52%), Gaps = 5/235 (2%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           AK   S++++D    ++   K    R P AS+TK+MTL +IFE + S KL    ++  S+
Sbjct: 58  AKQARSAVLMDFATGKVLYAKNAHERLPMASITKIMTLLLIFEAIDSGKLKWTDRVQASE 117

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T    +  +   SAND   A  E + GSE+ F   M+ +AK+
Sbjct: 118 RAASMGGSQIFLEPGETMTVRDLVKGIAIASANDACVAMAEHLDGSEEAFVARMNQRAKE 177

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAIL--GILLRKNFPQYYKYFS--IRKFRYRNRII 224
           +GM +T + N +GL   N  ++A D AI+   +L+      +   +S  +RK       +
Sbjct: 178 LGMTDTHFANCNGLPAPNHYSSAHDIAIMSRALLMHPEVTAFTSVYSDYLRKDTDHPLWL 237

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            N NKL+     +DG+KTGYT+ + + +  + +     ++AVVMG P    R+ +
Sbjct: 238 VNTNKLVRFYDGVDGLKTGYTQEAKYCLSATAKRDGFRVIAVVMGEPKPTVRNAE 292


>gi|258511715|ref|YP_003185149.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478441|gb|ACV58760.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 414

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 123/235 (52%), Gaps = 5/235 (2%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           AK   S++++D    ++   K    R P AS+TK+MTL +IFE + S KL    ++  S+
Sbjct: 58  AKQARSAVLMDFATGKVLYAKNAHERLPMASITKIMTLLLIFEAIDSGKLKWTDRVQASE 117

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T    +  +   SAND   A  E + GSE+ F   M+ +AK+
Sbjct: 118 RAASMGGSQIFLEPGETMTVRDLVKGIAIASANDACVAMAEHLDGSEEAFVARMNQRAKE 177

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAIL--GILLRKNFPQYYKYFS--IRKFRYRNRII 224
           +GM +T + N +GL   N  ++A D A++   +L+      +   +S  +RK       +
Sbjct: 178 LGMTDTHFANCNGLPAPNHYSSAHDIAVMSRALLMHPEITAFTSVYSDYLRKDTDHPLWL 237

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            N NKL+     +DG+KTGYT+ + + +  + +     ++AVVMG P    R+ +
Sbjct: 238 VNTNKLVRFYDGVDGLKTGYTQEAKYCLSATAKRDGFRVIAVVMGEPKPTVRNAE 292


>gi|160942230|ref|ZP_02089539.1| hypothetical protein CLOBOL_07116 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434787|gb|EDP12554.1| hypothetical protein CLOBOL_07116 [Clostridium bolteae ATCC
           BAA-613]
          Length = 453

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 125/234 (53%), Gaps = 12/234 (5%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+++ +  Q+   K  DE R PAS+TK+MTL +IF+ LQS K+ L  ++  S  A + 
Sbjct: 96  SAILMEASTGQVIYEKDADEKRSPASVTKVMTLILIFDALQSGKIQLTDEVVTSAHAKSM 155

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+E    T E  I  ++  S ND S A  E+I+GSE +F  +M+ +A  +GM N
Sbjct: 156 GGSQVFLEEGEKQTVETLIKCIVIASGNDASVAMAEYIAGSEDEFVRMMNERAASLGMSN 215

Query: 174 TIYKNASGLHDK-NQITTARDQAILGILLRKNFPQYYKYFSIR--------KFRYRNRII 224
           T + +  GL +  +  TTARD AI+   L   +PQ + Y +I         K   +   +
Sbjct: 216 THFVDCCGLTESPDHYTTARDIAIMSRELINKYPQIHNYSTIWMENITHVTKQGTKEFGL 275

Query: 225 TNHNKLLNKMHN--IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           +N NKLL    N  + G+KTG T  + + +  +       ++A +M  P  + R
Sbjct: 276 SNTNKLLKMATNFTVTGLKTGSTSIAKYCLSATAEKDGVRLIAAIMAAPDFKAR 329


>gi|255019743|ref|ZP_05291820.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC
           51756]
 gi|254970811|gb|EET28296.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC
           51756]
          Length = 388

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S +++D +  Q+   K++   R PASLTK+MT Y+ ++ + +  L  +  + VS TA   
Sbjct: 46  SYVLMDYDSGQIIAAKEENLHRAPASLTKLMTAYLTYQAMANGSLRPDETVNVSNTAWKT 105

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++++     T +Q +  L+  S ND + A  E + GS+  F  LM++ A+++ + N
Sbjct: 106 GGSRMFIQPGLPVTVDQLLHGLLIDSGNDAAVALAETVGGSQAGFVTLMNDAARQLHLDN 165

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           T Y N +GL D N  TTA D A L   L + +PQ       + + Y      + N +L +
Sbjct: 166 THYSNVNGLPDSNLYTTALDVAKLSRALIQQYPQVIAITRQKSYTYNKITQRSWNPVLFR 225

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
             ++DG+KTG T  SG+ I  + +     ++AVV+G P+
Sbjct: 226 DPSVDGLKTGLTDESGYCIDATAQRNGRRLIAVVLGGPS 264


>gi|239832000|ref|ZP_04680329.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium
           LMG 3301]
 gi|239824267|gb|EEQ95835.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium
           LMG 3301]
          Length = 398

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 117/216 (54%), Gaps = 5/216 (2%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYFTT 128
           P  PASL K+MT  ++FE L+     L+T  PVS+ A     A    S ++ + K+  T 
Sbjct: 63  PIPPASLAKLMTAEVVFEALEKGLTTLDTAYPVSENAWRTGGAPSGTSTMFARIKSSPTV 122

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
              +  +I ++AND +    E ++GSE+ FA  M+++A+++G+  + + N++GL  + Q 
Sbjct: 123 ADLLQGMIVQAANDGAIVLAEGLAGSERAFAERMNDRARELGLAASRFVNSTGLPAEGQT 182

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
            + +D   L   +R   P+YYKY++   F + N +  N N LL      DG+ TG+T  S
Sbjct: 183 VSLQDLVRLAQHIRTAHPEYYKYYAQPAFTWNNIMQRNRNPLLRLDVGADGMGTGFTEAS 242

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           GF +V S       +   + G+ + +ER+++A  L+
Sbjct: 243 GFALVGSAEQNGRRLYLAMSGLSSVKEREEEAKRLL 278


>gi|304559487|gb|ADM42151.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda FL6-60]
          Length = 399

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 140/262 (53%), Gaps = 15/262 (5%)

Query: 37  LSIIMISMASELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEY 92
           LS++ + + +   A P+ ++   I++D +  + +T    DE   PASLTK+M  Y+I + 
Sbjct: 19  LSLVALPLLAADPAPPQINAKAYILLDYDSGRVLTEGNADERLDPASLTKIMASYVIGQA 78

Query: 93  LQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           L+S K+     + V K A AT NP     S ++LK        +    ++ +S ND S A
Sbjct: 79  LKSGKIAPGDMVVVGKDAWATGNPLLRGSSLMFLKPGDRVPVAELNRGVVIQSGNDASIA 138

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             + ++GS+  F  LM+      G++NT ++   GL  + Q ++ARD A++   L  + P
Sbjct: 139 LADHVAGSQDAFVNLMNQYVGAWGLKNTHFRTVHGLDSEGQYSSARDMALISQRLIADVP 198

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP--I 263
             Y+    ++F +      N N+LL +   N+DG+KTG+T  +G N+V S    D P  +
Sbjct: 199 DEYQLNKEKEFTFNKIRQINRNRLLWDSSLNVDGVKTGFTGGAGHNLVAS--ATDGPMRL 256

Query: 264 VAVVMGMPTSQERDQKALELIT 285
           ++VV+G PT + R  ++ +L+T
Sbjct: 257 ISVVLGAPTDRIRFDESKKLLT 278


>gi|300717466|ref|YP_003742269.1| penicillin-binding protein 6B (D-alanyl-D-alanine carboxypeptidase)
           [Erwinia billingiae Eb661]
 gi|299063302|emb|CAX60422.1| Penicillin-binding protein 6B (D-alanyl-D-alanine carboxypeptidase)
           [Erwinia billingiae Eb661]
          Length = 379

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 125/239 (52%), Gaps = 8/239 (3%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT 112
           S +++D    Q +T    DE R PASLTK+MT Y++   + +K++  +  + + + A   
Sbjct: 29  SWVLMDATTGQVLTQGNADERRNPASLTKLMTGYVVDRAIDAKRITRDDMVTIGQDAWGA 88

Query: 113 QNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
            NP     S ++LK     +       +I  S ND   A  ++++GS+  F   M+    
Sbjct: 89  GNPVFKGSSLMFLKPGEKVSVRDLSRGVIIDSGNDACVALADYVAGSQSAFVDQMNQYVT 148

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           K+G+ NT ++   GL    Q TTA D A L   +    P +Y+ +  +   +      N 
Sbjct: 149 KLGLTNTHFETVHGLDAPGQFTTAGDLAKLSRAIISGEPDFYQMYGEKSLTWNGITQQNR 208

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N LL +K  ++DG+KTG+T ++GFNI+ S       ++AV+MG  +++ R+++A +L+T
Sbjct: 209 NGLLWDKTLHVDGLKTGHTESAGFNIIASSVDGQRRLIAVIMGGKSTKGREEQARKLLT 267


>gi|157692847|ref|YP_001487309.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus
           SAFR-032]
 gi|157681605|gb|ABV62749.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus
           SAFR-032]
          Length = 400

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 139/245 (56%), Gaps = 8/245 (3%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           SEL  + K S+I+I+ +  ++   K  DE   PAS+TK+MT+ +I E +   KL +  ++
Sbjct: 42  SELAHEAK-SAILIERDTGKVLYNKNSDEKLAPASMTKIMTMLLIMEAIDQGKLKMTDKV 100

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
             S  AA+   S+++L+     T ++ +  +   S ND S A  E I+GSE++F   M+ 
Sbjct: 101 RTSDHAASMGGSQIFLEPGEEMTVKEMLKGIAIASGNDASVAMAEHIAGSEEQFVEQMNK 160

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI-----RKFRY 219
           KAK++G+ +T+++N +GL +K+  +TA D A +   L K + Q  K+  +     R+   
Sbjct: 161 KAKELGLTSTVFQNPTGLPEKDHYSTAHDMAKMAKELLK-YEQITKFTGVYEDYLRQNTD 219

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           +   + N N+L+     +DG+KTG+T  + + +  S +  +  ++AVV G  T ++R+ +
Sbjct: 220 KKFWLVNTNRLIKFYPGVDGLKTGFTGEAKYCLTASAKKGNMRVIAVVFGASTPKDRNAQ 279

Query: 280 ALELI 284
            ++++
Sbjct: 280 VVKML 284


>gi|45644640|gb|AAS73028.1| D-alanyl-D-alanine carboxypeptidase [uncultured marine gamma
           proteobacterium EBAC20E09]
          Length = 382

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 112/197 (56%), Gaps = 6/197 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT Y++ + +Q+  + ++ ++ +S+ A     SK++++     +    +  +I
Sbjct: 54  PASMTKVMTAYVVADQIQNDLISIDDEVLISEKAWKMGGSKMFIEVGKRVSILDLLKGII 113

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND + A  E++ G+E  F  LM+  A  +GM NT + N++GL D N +TTA D AI
Sbjct: 114 IQSGNDAAVAIAEYVGGTEDGFVDLMNAYAASLGMNNTSFINSTGLPDVNHLTTAEDLAI 173

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           L       FP+ Y  F  ++F Y    I+    N NKLL +    DG+KTG+T ++G+ +
Sbjct: 174 LTSNFITKFPEIYALFKEKEFEYGG--ISGNKYNRNKLLWRDETSDGVKTGHTSSAGYCL 231

Query: 253 VTSLRYKDDPIVAVVMG 269
           + S +  +  ++ VV G
Sbjct: 232 IGSAKRGNMRLITVVAG 248


>gi|254714078|ref|ZP_05175889.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
 gi|254716865|ref|ZP_05178676.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
 gi|261218667|ref|ZP_05932948.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
 gi|261321835|ref|ZP_05961032.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
 gi|260923756|gb|EEX90324.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
 gi|261294525|gb|EEX98021.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
          Length = 396

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 116/218 (53%), Gaps = 5/218 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYF 126
           D+P  PASL K++T  ++FE L+  +  L T  PVS+ A     A    S ++ + K+  
Sbjct: 59  DKPVPPASLAKLITAEVVFEALEKGRTTLETAYPVSEYAWRTGGAPSGTSTMFARIKSTP 118

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           T    +  +I +SAND +    E ++GSE+ FA  M+ +AK++G+ ++ + N++GL    
Sbjct: 119 TVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQRAKELGLSSSKFVNSTGLPAAG 178

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           Q+ T  D   L   +    P+YY+Y+    + + N    N N LL      DG+ TG+T 
Sbjct: 179 QVVTLEDLLNLARHIHAAHPEYYRYYEQPAYTWNNITQRNRNPLLRLEVGADGMGTGFTE 238

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            SG+ +V S       +   + G+ + +ER+++A +LI
Sbjct: 239 ASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLI 276


>gi|251789994|ref|YP_003004715.1| beta-lactamase [Dickeya zeae Ech1591]
 gi|247538615|gb|ACT07236.1| Beta-lactamase [Dickeya zeae Ech1591]
          Length = 402

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 123/232 (53%), Gaps = 10/232 (4%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-----LYLKEKTYFTTEQ 130
           PASLTK+M+ Y+I + ++  K+    ++ V K A AT NPS      ++LK     +   
Sbjct: 66  PASLTKIMSSYVIGQAIKVGKIKPEDKVTVGKDAWATGNPSLRGSSLMFLKPGDQISVSD 125

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               ++ +S ND S A  ++++GS+  F  LM+  A  +G+ NT +    GL    Q +T
Sbjct: 126 LNKGMVIQSGNDASIALADYVAGSQDAFVSLMNQYALNLGLTNTHFLTVHGLDTPGQYST 185

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSG 249
           ARD A L   L ++ P  Y   S ++F + N    N N+LL   +  +DG+KTGYT  +G
Sbjct: 186 ARDMARLTQALIRDVPSEYALHSEKEFTFNNIRQPNRNRLLWSGNLRVDGVKTGYTDGAG 245

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQT 298
            ++V S    D  +++VV+G P+   R +++ +L+T    F E  TL    T
Sbjct: 246 HSLVASAVDGDMRLISVVLGAPSDAVRFRESEKLLTWGFRFFETATLVRSDT 297


>gi|225163790|ref|ZP_03726088.1| Serine-type D-Ala-D-Ala carboxypeptidase [Opitutaceae bacterium
           TAV2]
 gi|224801583|gb|EEG19881.1| Serine-type D-Ala-D-Ala carboxypeptidase [Opitutaceae bacterium
           TAV2]
          Length = 310

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 128/229 (55%), Gaps = 15/229 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D P  PAS+TK+MT  ++ + + +++L  +T + +S  A     S++YL+ +  FT +  
Sbjct: 57  DAPNPPASVTKLMTFLVVHDKITARQLSFDTPVTISLEAQRMGGSQVYLETQERFTVDDL 116

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------K 185
           + AL+ +SAND + A  E  +GS + F  LM+ +A ++GM +T ++   GL        +
Sbjct: 117 LYALMVQSANDAAIALAEAAAGSREAFVELMNTRAHQLGMTHTTWRTPHGLPPNTSLGQE 176

Query: 186 NQITTARDQAILG--ILLRKNFPQYYKYFSIRKFRYRNRI--ITNHNKLLNKMHNIDGIK 241
             + + RD A+L   +LL  +  +Y      R FR   ++  + NHN LL +++  DG+K
Sbjct: 177 PDLASPRDIALLSRHLLLNTDILRYTST-KTRDFRPGPKVQAMKNHNHLLWRVNGCDGLK 235

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           TGY   +GF++  +++  D  I+ V +G+P  ++RD     L+ S +EK
Sbjct: 236 TGYYAKAGFSLAATVQRNDRRIIVVTLGVPERKQRDV----LVASLIEK 280


>gi|146308809|ref|YP_001189274.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas mendocina
           ymp]
 gi|145577010|gb|ABP86542.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Pseudomonas mendocina ymp]
          Length = 386

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 136/270 (50%), Gaps = 11/270 (4%)

Query: 35  LFLSIIMISMASE----LHAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTL 86
           LFL ++   +A      + A P+ ++   +++D    Q+      + R P ASLTK+MT 
Sbjct: 12  LFLGLLTAPLAWSSQQVVPAPPQLAATSYVLMDAASGQVLVESNGDQRLPPASLTKLMTA 71

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           YI    +   ++  +  + VS+ A  +  SK++++     + +  +  +I +S ND S A
Sbjct: 72  YIATLEINRGQIKESDMVRVSEKAWRKGGSKMFIEVGKEVSVDDLLHGIIIQSGNDASIA 131

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E I+GSE  FA +M+  A+++GM NT + N++G  D    ++A D A L   +    P
Sbjct: 132 IAEHIAGSEDAFADMMNTHAQRLGMSNTHFMNSTGWPDPEHYSSAHDMAKLARAIIYEDP 191

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
            +Y  +  ++F +      N N LL +   +DG+KTG+T  +G+ +V S       ++A 
Sbjct: 192 AHYDIYKQKEFLWNGIKQPNRNLLLWRDSTVDGLKTGHTEEAGYCLVASAVRDGQRLIAA 251

Query: 267 VMGMPTSQERDQKALELIT---SFLEKKTL 293
           V G  + Q R  +  +L+T    F E +T 
Sbjct: 252 VFGTVSEQARAAEVQKLLTYGFRFFESRTF 281


>gi|153009406|ref|YP_001370621.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi
           ATCC 49188]
 gi|151561294|gb|ABS14792.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi
           ATCC 49188]
          Length = 398

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 136/263 (51%), Gaps = 9/263 (3%)

Query: 31  MGKILFLSIIMISMASELHA----KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTL 86
           +G  L +++ + S+A+ + A    K     +V D +   +     + P  PASL K+MT 
Sbjct: 16  VGVSLAVAVPVASLAAPVEAAFVTKAPQVLLVDDRSGTVLLSKNANVPIPPASLVKLMTA 75

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
            ++FE L+     L T   VS+ A     A    S ++ + K+  T    +  +I +SAN
Sbjct: 76  EVVFEALEQGATTLGTPYTVSENAWRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSAN 135

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D +    E ++GSE+ FA  M+++AK++G+  + + N++GL  + Q+ + +D   L   +
Sbjct: 136 DGAIVLAEGLAGSEQAFADRMNDRAKELGLIGSKFVNSTGLPAEGQVVSLQDLVRLARHI 195

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           R   P+YYKY++   F + N +  N N LL      DG+ TG+T  SGF +V S      
Sbjct: 196 RTAHPEYYKYYAQPAFTWNNIMQRNRNPLLRLDVGADGMGTGFTEASGFALVGSAEQNGR 255

Query: 262 PIVAVVMGMPTSQERDQKALELI 284
            +   + G+ + +ER+++A  L+
Sbjct: 256 RLYLAMSGLASIKEREEEAKRLL 278


>gi|222529548|ref|YP_002573430.1| serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456395|gb|ACM60657.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 386

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 131/240 (54%), Gaps = 5/240 (2%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+ AK   S+I++D +  ++   K    + P AS+TK+MT+ +I E ++  K+ L+ ++ 
Sbjct: 38  EISAK---SAILVDFDTGKILYEKNSHEKLPPASITKIMTMILICEAIEKGKIKLSDKVV 94

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
            S+ A++   S++YLKE    T E+ + ++   SAND   A  E I+GS ++F  +M+ K
Sbjct: 95  ASQNASSLGGSQVYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYMMNKK 154

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILG-ILLRKNFPQYYKYFSIRKFRYRNRII 224
           AK++GM +T + N  GL  +N  T+A D AI+   LL+    + Y    +   R     +
Sbjct: 155 AKELGMFDTNFVNPYGLDAENHYTSAYDVAIMSRELLKHKIIRKYLTTWVDTIREGKFGL 214

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           TN NKL+       G+KTG T  + F +  S       ++AV+MG P S+ R   A +++
Sbjct: 215 TNTNKLVRFYRGCTGVKTGSTDKAKFCVSASALRNGLHLIAVIMGAPDSKTRFNDATKVL 274


>gi|62289915|ref|YP_221708.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str.
           9-941]
 gi|82699842|ref|YP_414416.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis biovar
           Abortus 2308]
 gi|189024158|ref|YP_001934926.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus
           S19]
 gi|237815417|ref|ZP_04594415.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A]
 gi|254697357|ref|ZP_05159185.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260545336|ref|ZP_05821077.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038]
 gi|260761773|ref|ZP_05874116.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|62196047|gb|AAX74347.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str.
           9-941]
 gi|82615943|emb|CAJ10966.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella
           melitensis biovar Abortus 2308]
 gi|189019730|gb|ACD72452.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus
           S19]
 gi|237790254|gb|EEP64464.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A]
 gi|260096743|gb|EEW80618.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038]
 gi|260672205|gb|EEX59026.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2
           str. 86/8/59]
          Length = 396

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 115/218 (52%), Gaps = 5/218 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYF 126
           D+P  PASL K+MT  ++FE L+  +  L T  PVS+ A     A    S ++ + K+  
Sbjct: 59  DKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEYAWRTGGAPSGTSTMFARIKSTP 118

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           T    +  +I +SAND +    E ++GSE+ F   M+ +AK++G+ ++ + N++GL    
Sbjct: 119 TVADLLQGMIVQSANDGAIVLAEGLAGSEQTFTGAMNQRAKELGLSSSKFVNSTGLPAAG 178

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           Q+ T  D   L   +    P+YY+Y+    + + N    N N LL      DG+ TG+T 
Sbjct: 179 QVVTLEDLLNLARHIHAAHPEYYRYYEQPAYTWNNITQRNRNPLLRLEVGADGMGTGFTE 238

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            SG+ +V S       +   + G+ + +ER+++A +LI
Sbjct: 239 ASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLI 276


>gi|90581616|ref|ZP_01237407.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14]
 gi|90437199|gb|EAS62399.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14]
          Length = 391

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 123/225 (54%), Gaps = 5/225 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           I++D N  + + G  + E   PASLTKMMT Y+I + +++  +  +  + +SK A  +N 
Sbjct: 42  ILVDYNSGKILAGHNEYEKLAPASLTKMMTSYVIGQEIKNGNISPDDTVVISKNAWAKNF 101

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L+             +I  S ND   A  E ++GS++ F  LM+  AK +GM+
Sbjct: 102 PGSSKMFLEVGKSVKVSDLNRGIIVDSGNDACVAMAEHVAGSQESFVDLMNGWAKNLGMK 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           +T + N  GL   +  TT  D +IL   L ++ P  +K ++ + F Y      N N LL 
Sbjct: 162 STHFANVHGLDRPDLYTTPYDLSILARSLIRDLPNEFKIYAEKSFTYNGITQYNRNGLLW 221

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           +K  ++DG+KTG+T N+G+++V++    +  +++VVMG  +   R
Sbjct: 222 DKSMHVDGLKTGHTDNAGYSLVSTATEGNMRLISVVMGTASKNAR 266


>gi|269139610|ref|YP_003296311.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda EIB202]
 gi|267985272|gb|ACY85101.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda EIB202]
          Length = 411

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 140/262 (53%), Gaps = 15/262 (5%)

Query: 37  LSIIMISMASELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEY 92
           LS++ + + +   A P+ ++   I++D +  + +T    DE   PASLTK+M  Y+I + 
Sbjct: 31  LSLVALPLLAADPAPPQINAKAYILLDYDSGRVLTEGNADERLDPASLTKIMASYVIGQA 90

Query: 93  LQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           L+S K+     + V K A AT NP     S ++LK        +    ++ +S ND S A
Sbjct: 91  LKSGKIAPGDMVVVGKDAWATGNPLLRGSSLMFLKPGDRVPVAELNRGVVIQSGNDASIA 150

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             + ++GS+  F  LM+      G++NT ++   GL  + Q ++ARD A++   L  + P
Sbjct: 151 LADHVAGSQDAFVNLMNQYVGAWGLKNTHFRTVHGLDSEGQYSSARDMALISQRLIADVP 210

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP--I 263
             Y+    ++F +      N N+LL +   N+DG+KTG+T  +G N+V S    D P  +
Sbjct: 211 DEYQLNKEKEFTFNKIRQINRNRLLWDSSLNVDGVKTGFTGGAGHNLVAS--ATDGPMRL 268

Query: 264 VAVVMGMPTSQERDQKALELIT 285
           ++VV+G PT + R  ++ +L+T
Sbjct: 269 ISVVLGAPTDRIRFDESKKLLT 290


>gi|226323183|ref|ZP_03798701.1| hypothetical protein COPCOM_00955 [Coprococcus comes ATCC 27758]
 gi|225208373|gb|EEG90727.1| hypothetical protein COPCOM_00955 [Coprococcus comes ATCC 27758]
          Length = 425

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 146/292 (50%), Gaps = 13/292 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           EL A+   S+++++ +  Q+   K  DE + PAS+TK+MTL +IF+ L    +  +T++ 
Sbjct: 69  ELSAE---SAVIMEASGGQVLLEKNADEKKPPASVTKVMTLLLIFDALADGTITPDTEVT 125

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
            S+ AA+   S+++L+     T +  I  +   SAND   A  E I+GSE  F   M+ +
Sbjct: 126 TSEYAASMGGSQVFLEAGEKQTVDTMIKCIAVASANDACVAMAEKIAGSEPAFVEKMNQR 185

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-- 223
           +  +GM NT + N +GL  +  +TTARD A++   L   +PQ   Y +I      +    
Sbjct: 186 SAGLGMTNTHFVNCNGLDTEGHLTTARDIALMSRELITKYPQIEDYSTIWMENITHTTAK 245

Query: 224 ------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
                 ++N NKL+ +     G+KTG T  + F +  + R     ++AVVM  P S+ R 
Sbjct: 246 GSSEFGLSNTNKLIRQYEYATGLKTGSTSGAKFCLSATARKDGVNMIAVVMAEPDSKTRI 305

Query: 278 QKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKID 329
           + A+ ++     K ++ +Q     + +    +K  +  K    T   F+ +D
Sbjct: 306 KDAIAMLNYGFGKCSI-YQDEKALEKIVYAEVKHGMQEKAKGETLEGFRYVD 356


>gi|260438046|ref|ZP_05791862.1| serine-type D-Ala-D-Ala carboxypeptidase [Butyrivibrio crossotus
           DSM 2876]
 gi|292809525|gb|EFF68730.1| serine-type D-Ala-D-Ala carboxypeptidase [Butyrivibrio crossotus
           DSM 2876]
          Length = 385

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 136/261 (52%), Gaps = 11/261 (4%)

Query: 34  ILFLSIIMISM-ASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFE 91
           IL LS   IS+ A EL    K S+I+++ +  ++      DE   PAS+TK+MTL +IF+
Sbjct: 12  ILILSSAHISVTADELSLTSK-SAILMEASTGKIIYEHNPDEILRPASITKIMTLILIFD 70

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            +   ++ ++  + VS+ AA+   S+++L+     T E  I  +   SAND   A  E+I
Sbjct: 71  AIHDGRIKMDDTVTVSEHAASMGGSQVFLEAGETQTVETLIKCIAIASANDACVAMAEYI 130

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
             SE+ F   M+ +AK + M NT + N  GL   N +TTARD A++   L   +P+ +  
Sbjct: 131 DTSEENFVAHMNERAKGLSMTNTNFVNCCGLDADNHVTTARDVALMSKELINKYPEIHNI 190

Query: 212 FSIR--------KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
            +I         +    +  +TN NKL+ +     G+KTG T  +GF +  + +  D  +
Sbjct: 191 STIWMDTITHVTRRGESDFTLTNTNKLIKQYEWATGLKTGSTSLAGFCLSATAKRNDIEL 250

Query: 264 VAVVMGMPTSQERDQKALELI 284
           ++VVM     + R   +++L+
Sbjct: 251 ISVVMASKDGKSRVADSIKLL 271


>gi|47779364|gb|AAT38593.1| predicted penicillin-binding protein 6 precursor [uncultured gamma
           proteobacterium eBACHOT4E07]
          Length = 382

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 115/202 (56%), Gaps = 6/202 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT Y++ + +++  + L+  + +S+ A     SK++++     +    +  +I
Sbjct: 54  PASMTKVMTAYVVADQIKNDLISLDDSVLISEKAWRMGGSKMFIEVGKRVSILDLLKGII 113

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E++ G+E  F  LM++ A  +GM +T + N++GL ++  +T+ARD A 
Sbjct: 114 IQSGNDASVAIAEYVGGTEAGFVDLMNSYAGALGMADTTFINSTGLPNEGHLTSARDLAT 173

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           L      NFP  Y  F  ++F Y    IT    N NKLL +  + DG+KTG+T ++G+ +
Sbjct: 174 LTSNFMTNFPDIYALFKEKEFEYGG--ITGNKYNRNKLLWRDESSDGVKTGHTSSAGYCL 231

Query: 253 VTSLRYKDDPIVAVVMGMPTSQ 274
           + S +  +  ++ VV G  T+ 
Sbjct: 232 IGSAKRGNMRLITVVAGSDTAN 253


>gi|302871646|ref|YP_003840282.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574505|gb|ADL42296.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 386

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 131/240 (54%), Gaps = 5/240 (2%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+ AK   S+I++D +  ++   K    + P AS+TK+MT+ +I E ++  ++ L+ ++ 
Sbjct: 38  EISAK---SAILVDFDTGKILYEKNSHEKLPPASITKIMTMILICEAIEKGRIKLSDKVV 94

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
            S+ A++   S++YLKE    T E+ + ++   SAND   A  E I+GS ++F  +M+ K
Sbjct: 95  ASQNASSLGGSQVYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYMMNKK 154

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILG-ILLRKNFPQYYKYFSIRKFRYRNRII 224
           AK++GM +T + N  GL  +N  T+A D AI+   LL+    + Y    +   R     +
Sbjct: 155 AKELGMLDTNFVNPYGLDAENHYTSAYDVAIMSRELLKHKIIRKYLTTWVDTIREGKFGL 214

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           TN NKL+       G+KTG T  + F I  S       ++AV+MG P S+ R   A +++
Sbjct: 215 TNTNKLVRFYRGCTGVKTGSTDKAKFCISASALRNGLHLIAVIMGAPDSKTRFNDATKVL 274


>gi|225570661|ref|ZP_03779684.1| hypothetical protein CLOHYLEM_06761 [Clostridium hylemonae DSM
           15053]
 gi|225160488|gb|EEG73107.1| hypothetical protein CLOHYLEM_06761 [Clostridium hylemonae DSM
           15053]
          Length = 423

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 124/239 (51%), Gaps = 9/239 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+++++ +  Q+   K  DE R PAS+TK+MTL +IF+ L+  K+ L+  +  S+ AA+ 
Sbjct: 72  SAVLMEASTGQVIYEKDADEQRPPASVTKIMTLLLIFDALKDGKIKLDDSVSTSEFAASM 131

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+     T +  I  +   SAND   A  E+I G+E++F   M+ +AK +GM N
Sbjct: 132 GGSQVFLEPGETQTVDTMIKCIAVASANDACVAMAEYICGNEEEFVKNMNERAKGLGMTN 191

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--------IT 225
           T + N +GL     +TTARD A++   L   +PQ   Y  I      +          +T
Sbjct: 192 THFVNCNGLDTDGHLTTARDIALMSRELITTYPQIRDYSMIWMENITHTTNKGTTEFGLT 251

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N NKL+ +     G+KTG T  + + +  +       ++AV+M  P  + R   A  L+
Sbjct: 252 NTNKLVRQYEYATGLKTGSTDKAKYCVSATAEKNGMELIAVIMAAPDHKARFSDATTLL 310


>gi|152971007|ref|YP_001336116.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238895589|ref|YP_002920324.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330000619|ref|ZP_08303760.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3]
 gi|150955856|gb|ABR77886.1| DD-carboxypeptidase, penicillin-binding protein 6b [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238547906|dbj|BAH64257.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|328537943|gb|EGF64124.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3]
          Length = 389

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 124/238 (52%), Gaps = 8/238 (3%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT 112
           S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + V K A A 
Sbjct: 39  SWVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITFDDIVTVGKDAWAK 98

Query: 113 QNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
            NP     S ++LK     +       LI  S ND   A  ++++G + +F  LM+   +
Sbjct: 99  GNPVFDGSSLMFLKPGDRVSVRDLSRGLIVDSGNDACVALADYVAGGQPQFVALMNQYVE 158

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           K+ +++T ++   GL    Q ++A D A+L   +    P  Y  +S +   +      N 
Sbjct: 159 KLHLRDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPDVYHMYSQKSLTWNGITQQNR 218

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  + + R+Q+A +L+
Sbjct: 219 NGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSPKGREQQAAKLL 276


>gi|238920432|ref|YP_002933947.1| D-alanyl-D-alanine carboxypeptidase DacC [Edwardsiella ictaluri
           93-146]
 gi|238870001|gb|ACR69712.1| D-alanyl-D-alanine carboxypeptidase DacC [Edwardsiella ictaluri
           93-146]
          Length = 450

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 140/262 (53%), Gaps = 15/262 (5%)

Query: 37  LSIIMISMASELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEY 92
           LS++ + + +   A P+ ++   I++D +  + +T    DE   PASLTK+M  Y+I + 
Sbjct: 70  LSLVALPLQAADPAPPQVNAKAYILLDYDSGRVLTEGNADERLDPASLTKIMASYVIGQA 129

Query: 93  LQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           L+S K+     + V K A AT NP     S ++LK        +    ++ +S ND S A
Sbjct: 130 LKSGKIAPGDMVVVGKDAWATGNPLLRGSSLMFLKPGDRVPVAELNRGVVIQSGNDASIA 189

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             + ++GS+  F  LM+      G++NT ++   GL  + Q ++ARD A++   L  + P
Sbjct: 190 LADHVAGSQDTFVNLMNQYVSAWGLKNTHFQTVHGLDSEGQYSSARDMALISQRLIADVP 249

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP--I 263
             Y+    ++F +      N N+LL +   N+DG+KTG+T  +G N+V S    D P  +
Sbjct: 250 DEYQLNKEKEFTFNKIRQINRNRLLWDSSLNVDGVKTGFTSGAGHNLVAS--AIDGPMRL 307

Query: 264 VAVVMGMPTSQERDQKALELIT 285
           ++VV+G PT + R  ++ +L+T
Sbjct: 308 ISVVLGAPTDRVRFDESKKLLT 329


>gi|154483610|ref|ZP_02026058.1| hypothetical protein EUBVEN_01314 [Eubacterium ventriosum ATCC
           27560]
 gi|149735520|gb|EDM51406.1| hypothetical protein EUBVEN_01314 [Eubacterium ventriosum ATCC
           27560]
          Length = 387

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 119/223 (53%), Gaps = 9/223 (4%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
           Q+E   PAS+TK+MTL +IF+ + S K+ L      S  A +   S+++L+E    T E 
Sbjct: 50  QNEKLSPASITKIMTLVLIFDAIHSGKIKLTDVATTSAYAKSMGGSQVFLEEGETQTVET 109

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQIT 189
            I  +I  S ND S    E I+GSE+ F   M+ +AK +GM NT + +  GL D  +  T
Sbjct: 110 LIKCIIIASGNDASVVMAEMIAGSEEAFVKKMNERAKSLGMNNTHFIDCCGLTDSDDHYT 169

Query: 190 TARDQAILGILLRKNFPQYYKYFSIR--------KFRYRNRIITNHNKLLNKMHNIDGIK 241
           TA+D A++   L + +P+ +KY +I         K   +  +++N NKLL     + G+K
Sbjct: 170 TAKDVALMSRELIEKYPEIFKYSTIWMESITHKTKAGEKEFVLSNTNKLLKTNQYVKGLK 229

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           TG T  + + + T        ++AVVM  P  + R +++ +LI
Sbjct: 230 TGSTSKAKYCVSTVAEKDGVQLIAVVMAAPDYKIRFKESEKLI 272


>gi|163814026|ref|ZP_02205418.1| hypothetical protein COPEUT_00178 [Coprococcus eutactus ATCC 27759]
 gi|158450475|gb|EDP27470.1| hypothetical protein COPEUT_00178 [Coprococcus eutactus ATCC 27759]
          Length = 417

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 119/239 (49%), Gaps = 9/239 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+++    Q+   K  D    PAS+TK+MTL + FE +   K  L+  + VS  AA+ 
Sbjct: 66  SAILMEAESGQVIYEKNCDTAMAPASVTKVMTLLLTFEAIDDGKFSLDDTVVVSDHAASM 125

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+ + +     T +  I  +I  S ND + A  E I+GSE  F  +M+ +AK++GM+N
Sbjct: 126 GGSQCFFESGEEQTVQDMIKCIIIASGNDAAVAMAEKIAGSEPAFVNMMNERAKELGMEN 185

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI-------RKFRYRNRI-IT 225
             +KNA GL       +ARD A++   L     + + Y  I       +  R  +R  + 
Sbjct: 186 ASFKNACGLDTSGHEMSARDIALMSRELITKHSEIFDYSGIWMDHITHKTARGDSRFDLV 245

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N NK LN      G+KTGYT  + + +  +       ++AV+MG  T + R+  A  L+
Sbjct: 246 NTNKFLNMYTGATGLKTGYTSTAKYCMSATAERDGIDLIAVIMGGETKEMRNNDACHLL 304


>gi|330505013|ref|YP_004381882.1| serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas mendocina
           NK-01]
 gi|328919299|gb|AEB60130.1| serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas mendocina
           NK-01]
          Length = 391

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 138/268 (51%), Gaps = 12/268 (4%)

Query: 41  MISMASELHAKPKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           ++  A +L AK   S +++D  + N +     D+   PASLTK+MT YI    +++ K+ 
Sbjct: 28  VVPAAPQLAAK---SYVLMDAASGNVLVENNADQRLPPASLTKLMTAYIATLEIRNGKIG 84

Query: 100 LNTQIPVSKTA-----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
               + +S+ A     A    S ++L   +  T +  +  +I +S ND S A  E+I+GS
Sbjct: 85  EQDLVTISEHAWRTGGAASGGSTMFLPLNSQATVDDLLHGIIIQSGNDASIAIAEYIAGS 144

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           E  FA +M+  A+++GM+N+ + NA+GL      ++A D AIL   +     ++Y  +S 
Sbjct: 145 EDAFADMMNATAERLGMKNSHFMNATGLPHPEHYSSAHDMAILARAIINEDAEHYAIYSQ 204

Query: 215 RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           ++F + N    N N LL +   +DG+KTG+T  +G+ +V S       ++  V G  + Q
Sbjct: 205 KEFLWNNIKQPNRNLLLWRDRTVDGLKTGHTSEAGYCLVASAVRDGARMITSVFGTDSEQ 264

Query: 275 ERDQKALELIT---SFLEKKTLKHQQTH 299
            R  +  +L+T    F E +T   + T 
Sbjct: 265 ARAAETQKLLTYGFRFFESRTFYQKGTE 292


>gi|206579571|ref|YP_002237570.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae
           342]
 gi|206568629|gb|ACI10405.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae
           342]
          Length = 389

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 124/238 (52%), Gaps = 8/238 (3%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT 112
           S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + V K A A 
Sbjct: 39  SWVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITFDDIVTVGKDAWAK 98

Query: 113 QNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
            NP     S ++LK     +       LI  S ND   A  ++++G + +F  LM+   +
Sbjct: 99  GNPVFDGSSLMFLKPGDRVSVRDLSRGLIVDSGNDACVALADYVAGGQPQFVALMNQYVE 158

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           K+ +++T ++   GL    Q ++A D A+L   +    P  Y  +S +   +      N 
Sbjct: 159 KLHLRDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPDVYHMYSQKSLTWNGITQQNR 218

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  + + R+Q+A +L+
Sbjct: 219 NGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSPKGREQQAAKLL 276


>gi|89895051|ref|YP_518538.1| hypothetical protein DSY2305 [Desulfitobacterium hafniense Y51]
 gi|219669462|ref|YP_002459897.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
           hafniense DCB-2]
 gi|89334499|dbj|BAE84094.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539722|gb|ACL21461.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
           hafniense DCB-2]
          Length = 380

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 124/220 (56%), Gaps = 4/220 (1%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I++D    Q+   K+     P AS+TK+MTL +  E ++S ++ L  ++  S+ A++ 
Sbjct: 35  SAILMDAKSGQILFEKEIHKELPPASVTKLMTLLVAAEAVESGRVSLTDKVTASEGASSL 94

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S++YL+    F+ E+ ++++   SAND   A GE ISG+ + F   M+ KAK+IG  +
Sbjct: 95  GGSQIYLEPGETFSLEEMLISIAVGSANDACYAVGEHISGTHEAFVEEMNKKAKEIGANH 154

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR--IITNHNKLL 231
           T + NA GL  +   T+A D A++G    K +P   K  +++++  R     + N NKLL
Sbjct: 155 THFVNAYGLPAQGHYTSAYDLALMGREALK-YPLVRKLTNMKEYDLRGGKFKLWNTNKLL 213

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
                 DG KTG+T  + + + +++      ++AVVMG+P
Sbjct: 214 WWYEGADGFKTGWTSEANYCLASTVERDGLRLIAVVMGVP 253


>gi|23099297|ref|NP_692763.1| D-alanyl-D-alanine carboxypeptidase [Oceanobacillus iheyensis
           HTE831]
 gi|22777526|dbj|BAC13798.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
           [Oceanobacillus iheyensis HTE831]
          Length = 388

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 119/212 (56%), Gaps = 4/212 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MTL +I E L+   +  +  + VS  AA+   S+++L+     T    +  + 
Sbjct: 62  PASMTKIMTLLLIMESLEKGDIAKDDVVIVSDKAASMGGSQIFLEAGEEMTVNDLLKGVA 121

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND S A  E I+GSE+ F   M+ KAK++ ++NT+++N +GL ++N  ++A D AI
Sbjct: 122 VASGNDASVALAEKIAGSEEAFVNKMNEKAKELNLKNTLFQNTTGLPEENHYSSAYDMAI 181

Query: 197 LG--ILLRKNFPQYYKYFS--IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           +   +L  ++  +Y   +   +R+ +     + N NKL+      DG+KTGYT  + + +
Sbjct: 182 MANELLKHESITEYTSIYEDYLRQGQDNEFWLVNTNKLVRFYKGADGLKTGYTSEAKYCL 241

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
             + +  +  +VAVVMG  + +ER+    EL+
Sbjct: 242 TATAKRDNMRVVAVVMGAKSPKERNSMVTELL 273


>gi|298368809|ref|ZP_06980127.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria sp. oral taxon
           014 str. F0314]
 gi|298282812|gb|EFI24299.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria sp. oral taxon
           014 str. F0314]
          Length = 450

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 128/247 (51%), Gaps = 14/247 (5%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           IV D+  NQ +     D    PASLTKMMT Y+ F+ L+   L  +  + VS        
Sbjct: 92  IVKDLQSNQVLAANNPDNLIEPASLTKMMTAYLTFKALEDGTLKADEMLTVSDAGWHTEG 151

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG----SE---------KKFAILM 162
           S+++L      +    +  +I +S ND +    E I G    SE         + F  +M
Sbjct: 152 SRMFLNPHVPVSVSDLLKGMIVQSGNDAAITLAEAIGGIGNDSEQTETPKPPLENFVAMM 211

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
           + +AK++GM +T + N +GL  +  ++T  D A+L   L +++P+YY  FS++ FRY   
Sbjct: 212 NMEAKRLGMNHTRFNNPTGLASERHLSTVSDLALLAAALIRDYPKYYPIFSLKSFRYNGI 271

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
              N N LL +  ++DG+KTG+T ++G+N+  S       I+ +V+G  +++ R  ++ +
Sbjct: 272 EQPNRNLLLFRDSSVDGLKTGHTESAGYNLAASSNRNGRRIITIVVGAESTEARASESGK 331

Query: 283 LITSFLE 289
           L+   L+
Sbjct: 332 LLNWALQ 338


>gi|220929171|ref|YP_002506080.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           cellulolyticum H10]
 gi|219999499|gb|ACL76100.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           cellulolyticum H10]
          Length = 408

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 130/233 (55%), Gaps = 7/233 (3%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           +L AK   S++++D    ++   K    R   AS+TK+MT+ ++ E + + +   + ++ 
Sbjct: 55  DLRAK---SAVLMDAASGKVLTEKNSHERLAIASVTKIMTMLLVMEAIDAGRFTFDEKVS 111

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           VS+ +A    S+ Y++    FT  + + AL   S+NDV+ A  E +SGSE+ F   M+NK
Sbjct: 112 VSEYSAGMGGSQAYMEPGEVFTVTEMMNALAIHSSNDVAVALAEKVSGSEETFVTDMNNK 171

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-- 223
           A+ +GM++T + + +GL+D +  +TA D A++   L    P+  ++       +RN    
Sbjct: 172 AQALGMKDTKFMDCTGLND-DGYSTAHDVALMSRELVIKHPKVLQFTGKWHDTFRNGTFD 230

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           + N NKL+    N DG+KTG+T  +GFN+  +    +  +++VV+G P S  R
Sbjct: 231 LYNTNKLVKFYANCDGLKTGFTNKAGFNLSATTIRNNLRLISVVLGEPDSNTR 283


>gi|50084413|ref|YP_045923.1| D-ala-D-ala-carboxypeptidase [Acinetobacter sp. ADP1]
 gi|49530389|emb|CAG68101.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           (precursor) [Acinetobacter sp. ADP1]
          Length = 382

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 131/234 (55%), Gaps = 4/234 (1%)

Query: 55  SSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           S +++D    Q+   K ++E   PAS+TKMMT YII + L   +L    Q+ ++++A   
Sbjct: 33  SYVLMDYETGQILASKNENEHLAPASMTKMMTSYIIEQKLLKGELTEGEQVRMNESAWCR 92

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            + + S +Y+      T  + +  +I +S ND S A  E ++G+E  FA +M+ +AK++G
Sbjct: 93  GSSSESCMYVPLNGTATVLEMLRGIIVQSGNDASKAMAEHVAGNEGTFAHMMNQEAKRLG 152

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M NT + N++GL  +   ++A+D AIL   + K+  +YY  +S ++F +      N N L
Sbjct: 153 MVNTHFMNSTGLPAEGHYSSAKDMAILAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNAL 212

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           L    ++DG+KTG+T  +G+ + TS +     +++V+ G  +  ER  +   L+
Sbjct: 213 LYTDPSVDGLKTGHTSEAGYCLTTSSKRGPMRLISVIFGTTSVNERANQTRTLL 266


>gi|168215435|ref|ZP_02641060.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens NCTC
           8239]
 gi|182382426|gb|EDT79905.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens NCTC
           8239]
          Length = 402

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 8/232 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +  E +   ++ L+ QI VS+TA     S + L      T E+ I  + 
Sbjct: 61  PASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGSTMLLDVGEVRTVEEIIKGIG 120

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A  E++ GSE  F  +M+ +AK++GM+NT +KN +GL  +  ++TA D +I
Sbjct: 121 IASGNDAAVAMAEYLGGSESGFVEMMNKRAKELGMKNTTFKNCTGLPIEGHLSTAYDISI 180

Query: 197 LGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +   L K+ P   KY      +I + R     + NHNKL+      DG+KTG+T ++ + 
Sbjct: 181 MSRELLKH-PTILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTNDAKYC 239

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
           I  +       +++V+MG PT + R++ A  L+     K   + +Q   KD 
Sbjct: 240 ISATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGFSK--FESKQVATKDG 289


>gi|168210830|ref|ZP_02636455.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens B str.
           ATCC 3626]
 gi|170711096|gb|EDT23278.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens B str.
           ATCC 3626]
          Length = 402

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 116/209 (55%), Gaps = 6/209 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +  E +   ++ L+ QI VS+TA     S + L      T E+ I  + 
Sbjct: 61  PASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGSTMLLDVGEVRTVEEIIKGIG 120

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A  E++ GSE  F  +M+ +AK++GM+NT +KN +GL  +  ++TA D +I
Sbjct: 121 IASGNDAAVAMAEYLGGSESGFVEMMNKRAKELGMKNTTFKNCTGLPIEGHLSTAYDISI 180

Query: 197 LGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +   L K+ P   KY      +I + R     + NHNKL+      DG+KTG+T ++ + 
Sbjct: 181 MSRELLKH-PTILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTNDAKYC 239

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           I  +       +++V+MG PT + R++ A
Sbjct: 240 ISATATRDGVRMLSVIMGAPTFKIRNRDA 268


>gi|261403951|ref|YP_003240192.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp.
           Y412MC10]
 gi|261280414|gb|ACX62385.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp.
           Y412MC10]
          Length = 472

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 128/249 (51%), Gaps = 27/249 (10%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+++I+ +  Q +     DE   PAS+TKMMT YI+ E ++  +L  +  + V + A   
Sbjct: 83  SAVLIEPSTGQVLLSINADEALPPASMTKMMTEYIVAEKVKQGELAWDDVVTVGENAEKT 142

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L E    T E+  +A+   SAND + A  E ++GSE +F  +M++ AKK+G++ 
Sbjct: 143 VGSRIFLAEGDQHTVEELYIAMAVGSANDATVALAEHVAGSEAEFVTMMNDTAKKMGLKT 202

Query: 174 TIYKNASGL------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
             + N++GL             DK  + +A D A+L   + ++ P + K+ +I+  ++R 
Sbjct: 203 AFFINSTGLSRADMPEKYRPAEDKETVMSAMDTALLAKYIVEDHPDFAKFTAIQSHKFRP 262

Query: 222 R---IITNHNKLLNKMHNI-----------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           R    I N+N +L    +I           DG+KTG+T  +G+    +       +++VV
Sbjct: 263 RDTSPIINYNWMLEANKSITNFKAYAYEGLDGLKTGHTNAAGYCFAGTAERDGMRLISVV 322

Query: 268 MGMPTSQER 276
           MG  +   R
Sbjct: 323 MGTKSEGAR 331


>gi|18310788|ref|NP_562722.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium perfringens
           str. 13]
 gi|110799537|ref|YP_696490.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens ATCC
           13124]
 gi|168214381|ref|ZP_02640006.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens CPE
           str. F4969]
 gi|18145469|dbj|BAB81512.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium perfringens
           str. 13]
 gi|110674184|gb|ABG83171.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens ATCC
           13124]
 gi|170714156|gb|EDT26338.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens CPE
           str. F4969]
          Length = 402

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 8/232 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +  E +   ++ L+ QI VS+TA     S + L      T E+ I  + 
Sbjct: 61  PASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGSTMLLDVGEVRTVEEIIKGIG 120

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A  E++ GSE  F  +M+ +AK++GM+NT +KN +GL  +  ++TA D +I
Sbjct: 121 IASGNDAAVAMAEYLGGSESGFVEMMNKRAKELGMKNTTFKNCTGLPIEGHLSTAYDISI 180

Query: 197 LGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +   L K+ P   KY      +I + R     + NHNKL+      DG+KTG+T ++ + 
Sbjct: 181 MSRELLKH-PTILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTNDAKYC 239

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
           I  +       +++V+MG PT + R++ A  L+     K   + +Q   KD 
Sbjct: 240 ISATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGFSK--FESKQVATKDG 289


>gi|323164088|gb|EFZ49896.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella sonnei 53G]
 gi|332761340|gb|EGJ91626.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri
           2747-71]
          Length = 284

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 123/234 (52%), Gaps = 8/234 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT 112
           S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K      + +   A AT
Sbjct: 48  SYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWAT 107

Query: 113 QNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
            NP     S ++LK        Q I  +  +S ND   A  +F +GS+  F  LM++   
Sbjct: 108 GNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVN 167

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
            +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  +  ++F +      N 
Sbjct: 168 ALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNR 227

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T + R+ ++
Sbjct: 228 NGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAES 281


>gi|27379630|ref|NP_771159.1| penicillin binding protein [Bradyrhizobium japonicum USDA 110]
 gi|27352782|dbj|BAC49784.1| penicillin binding protein [Bradyrhizobium japonicum USDA 110]
          Length = 451

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 120/234 (51%), Gaps = 15/234 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYF 126
           DE R P+S+ K+MT  ++F  +Q   + L  +  +S+ A     A    S ++    +  
Sbjct: 110 DELRAPSSMMKLMTAEVVFNAIQKGDIKLTDEYRISENAWRKGGAPSGGSTMFAAINSKV 169

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAI-LMSNKAKKIGMQNTIYKNASGLHDK 185
           + +  +   I +S ND   A  E ++G+E+ FA   M+ +A+++GM  + + N++GL D 
Sbjct: 170 SVDDLLHGAIIQSGNDACIALAEAMAGNERIFAADFMTKRARELGMTKSTFGNSNGLPDP 229

Query: 186 NQITTARDQAILGILLRK---NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKT 242
               T R+   LGIL R    +FP++YK F  +++ +      N N LLN M   DG+KT
Sbjct: 230 GNKMTVRE---LGILARHIILDFPEFYKLFGEKEYTWNKIRQPNRNPLLNSMEGADGLKT 286

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA---LELITSFLEKKTL 293
           GYT+  G+ +V S       ++ VV G+   ++R  +A   LE      E +TL
Sbjct: 287 GYTKEGGYGMVGSAVQNGTRLIVVVNGLEDPEDRATEAKKMLEWGFRNFETRTL 340


>gi|308186205|ref|YP_003930336.1| D-alanyl-D-alanine carboxypeptidase [Pantoea vagans C9-1]
 gi|308056715|gb|ADO08887.1| D-alanyl-D-alanine carboxypeptidase [Pantoea vagans C9-1]
          Length = 400

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 142/268 (52%), Gaps = 22/268 (8%)

Query: 34  ILFLSIIMISMASELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYII 89
           +L L+ I +  A +  A P   +   I+ID    + +T    D+   PASLTKMMT Y++
Sbjct: 18  LLILAPISV-FAEQAPAAPGIDAKAWILIDYASGKVLTESSADQRLDPASLTKMMTSYVV 76

Query: 90  FEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDV 143
            + +++ K+  +  + V + A AT NP     S ++LK        +    ++ +S ND 
Sbjct: 77  GQAIKAGKIKPDDLVTVGQDAWATGNPKLRGSSLMFLKPGDRIPVHELNKGIVIQSGNDA 136

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
             A  ++++GS+  F  LM+N  K +G+QNT +    GL  + Q +TARD A++   L +
Sbjct: 137 CIALADYVAGSQDSFIGLMNNYVKALGLQNTHFMTVHGLDAEGQYSTARDMALIAQALIR 196

Query: 204 NFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLR 257
           + P+ Y     K F+  K R  NR     N+LL   +  +DG+KTG+T  +G N+V S  
Sbjct: 197 DVPEEYALNKEKEFTFNKIRQINR-----NRLLWSTNLKVDGVKTGHTSGAGNNLVASAT 251

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELIT 285
             D  +++VV+G  +   R +++ +L+T
Sbjct: 252 EGDMRLISVVLGTASDAIRFRESEKLLT 279


>gi|217976731|ref|YP_002360878.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris
           BL2]
 gi|217502107|gb|ACK49516.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris
           BL2]
          Length = 407

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 116/235 (49%), Gaps = 8/235 (3%)

Query: 56  SIVIDVNKNQMTGFKQDE--PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           +I+IDV    +  F++D   P  PAS  K+MT  ++F  L   ++ L+ +  +S+ A   
Sbjct: 41  AILIDVETGSVL-FEKDADAPVTPASTVKVMTADVVFGELAQGRIKLDDEFTISEHAWRT 99

Query: 111 --ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
             A    S ++    +    E  I  L+  S ND + A  E ++GSE  FA LM  +  +
Sbjct: 100 GGAPARASSMFAALNSRVRVEDLIRGLVIDSGNDAAIALAEGVAGSETAFAGLMMKRGHE 159

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           +G+  +++ N  G  D  Q  T R+  IL   +   +P YYKYF  ++F +     TN N
Sbjct: 160 LGLTRSVFTNPWGKDDPEQKVTPREMTILAAHVIATYPDYYKYFGEKEFTWNKIRQTNRN 219

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            LL      DG+KTG    SGF +V S       ++  + G  T++ER ++A +L
Sbjct: 220 PLLTMDIGADGLKTGNIDASGFGLVGSAVQNGQRLILALYGATTAKERAEEARKL 274


>gi|295696433|ref|YP_003589671.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM
           2912]
 gi|295412035|gb|ADG06527.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM
           2912]
          Length = 403

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 126/235 (53%), Gaps = 11/235 (4%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+   Q+   K  DEP YPAS+TK++T  +  E  Q     LN +I  S+ A  Q
Sbjct: 42  SAVLMDMKTGQVLYAKNPDEPHYPASITKILTAIVALERGQ-----LNDRITTSRLATLQ 96

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           + +++YL E    + E+ +  ++  S ND + A  E   GS   FA +M+  AK+IG  +
Sbjct: 97  DGNRIYLVEGEEHSLEELLYGMMLNSGNDAAVAIAEHYGGSVAGFAAMMNATAKEIGALH 156

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR----IITNHNK 229
           T + N +GLHD N +TTA D  ++G    +N P + +  + + + +  +     + N N+
Sbjct: 157 THFTNPNGLHDPNHVTTAYDMCLIGRYAMQN-PIFRQIVATKTYPWHGKEWESELVNINR 215

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +L       GIKTGYT  +   +V S    ++ ++A +M +P  +   ++A +L+
Sbjct: 216 MLWTYPGATGIKTGYTDQAQQTMVVSATRGNESLIATLMDIPGQEAMREEASKLL 270


>gi|229543944|ref|ZP_04433003.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus coagulans 36D1]
 gi|229325083|gb|EEN90759.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus coagulans 36D1]
          Length = 387

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 120/217 (55%), Gaps = 14/217 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +I E L   ++ ++ ++  S+ AA+   S+++L+     T EQ +  + 
Sbjct: 60  PASMTKIMTMLLIMEALDKGEIKMDEKVRTSEYAASMGGSQIFLEPGEEMTVEQMLKGIA 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             SAND + A  E I GSE+ F   M+ +AK +G++NT ++N +GL  K   ++A D AI
Sbjct: 120 IGSANDAAVAMAERIGGSEEAFVDKMNERAKALGLKNTHFENVTGLPVKGHYSSAYDMAI 179

Query: 197 LGILLRKN---------FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRN 247
           +   L K+         +  Y +  S +KF      + N NKL+     +DG+KTG+T  
Sbjct: 180 MAKQLLKHHGITHFTGKYEDYLREGSDKKF-----WLVNTNKLVRHYPGVDGLKTGFTNE 234

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           + F +  + +     ++AVV G P+++ R+ +  +++
Sbjct: 235 AKFCLTATAKKNGMRVIAVVFGAPSTKVRNAQVSKML 271


>gi|115523726|ref|YP_780637.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisA53]
 gi|115517673|gb|ABJ05657.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisA53]
          Length = 385

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 108/213 (50%), Gaps = 7/213 (3%)

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  +  T  T +  +  ++ +SAND++    E + GS   F+  M+  A+++GM  T Y 
Sbjct: 1   MGFRAGTQVTVDNALKMMMVKSANDMAVVLAEGVGGSIDGFSEQMNRAAQRLGMTQTNYV 60

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNI 237
           N +GL    Q+T+ARD AIL   +  + P+Y  +  I   R+  R+  N N+L+ +    
Sbjct: 61  NPNGLPADGQVTSARDLAILARAIIHDLPEYEYFVHIPAIRFGKRVTPNFNRLIGRYPGA 120

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQ 297
           DG+KTG+   SGFN+V S       ++A+V+G P+SQ R  KA++L+        L   Q
Sbjct: 121 DGMKTGFICASGFNLVASATRNGRRLIAIVLGAPSSQARALKAMQLLERGFGANQLSWLQ 180

Query: 298 T--HRKDNL-----SSTSLKKSLMIKKLKRTYS 323
                 DNL     +  +L+  +   K KR  S
Sbjct: 181 PALGSVDNLAPIDAAPPNLRDEMCGPKRKRPAS 213


>gi|157145043|ref|YP_001452362.1| D-alanyl-D-alanine carboxypeptidase [Citrobacter koseri ATCC
           BAA-895]
 gi|157082248|gb|ABV11926.1| hypothetical protein CKO_00774 [Citrobacter koseri ATCC BAA-895]
          Length = 420

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 139/266 (52%), Gaps = 19/266 (7%)

Query: 38  SIIMISMASELHAK-PKYSS----------IVIDVNKNQ-MTGFKQDEPRYPASLTKMMT 85
           S++ ++++S L A  P +S           +++D    Q +T   + + R PASLTK+MT
Sbjct: 42  SLLAMNLSSALAADVPDFSPQPPAIQAGSWVLMDYTTGQILTAGNEHQRRNPASLTKLMT 101

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRS 139
            Y++   + S ++  +  + V + A A  NP     S ++LK+    +       LI  S
Sbjct: 102 GYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKQGERVSVRDLSRGLIVDS 161

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND   A  ++I+G + +F  +M++  + + +Q+T ++   GL    Q ++A D A+L  
Sbjct: 162 GNDACVALADYIAGGQPQFVAMMNHYVETLKLQDTHFETVHGLDAPGQHSSAYDLAVLSR 221

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRY 258
            +    P++Y  +S +   +      N N LL +K  NIDG+KTG+T  +GFN++ S   
Sbjct: 222 AIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNIDGLKTGHTSGAGFNLIASSVD 281

Query: 259 KDDPIVAVVMGMPTSQERDQKALELI 284
               ++AVVMG  +++ R+ +A +L+
Sbjct: 282 GQRRLIAVVMGAESAKGREDQARKLL 307


>gi|271500864|ref|YP_003333889.1| beta-lactamase [Dickeya dadantii Ech586]
 gi|270344419|gb|ACZ77184.1| Beta-lactamase [Dickeya dadantii Ech586]
          Length = 402

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 143/287 (49%), Gaps = 14/287 (4%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRY-PASLT 81
           R I      + +++  +  A ++   P+  +   I+ID    ++      + R  PASLT
Sbjct: 11  RRIVAAATGILMAVSPVLQAEQMPPPPQIDAKAFILIDYGSGRVLAESNADTRLDPASLT 70

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILAL 135
           K+M+ Y+I + ++  K+    ++ V K A A  NP     S ++LK     +       +
Sbjct: 71  KIMSSYVIGQAIKVGKITPEDKVTVGKDAWAGGNPTLRGSSLMFLKPGDQISVSDLNKGI 130

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + +S ND S A  ++++GS+  F  LM+  A  +G+ NT +    GL    Q +TARD A
Sbjct: 131 VIQSGNDASIALADYVAGSQNAFVSLMNQYAATLGLTNTHFLTVHGLDTPGQYSTARDMA 190

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVT 254
            L   L ++ P  Y   S ++F + N    N N+LL   +  +DG+KTGYT  +G ++V 
Sbjct: 191 RLTQALIRDVPSEYALHSEKEFTFNNIRQPNRNRLLWSSNLRVDGVKTGYTDGAGHSLVA 250

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQT 298
           S    D  +++VV+G P+   R +++ +L+T    F E  TL    T
Sbjct: 251 SAVDGDMRLISVVLGAPSDTIRFRESEKLLTWGFRFFETATLIRSDT 297


>gi|329930179|ref|ZP_08283792.1| D-alanyl-D-alanine carboxypeptidase DacA [Paenibacillus sp. HGF5]
 gi|328935201|gb|EGG31682.1| D-alanyl-D-alanine carboxypeptidase DacA [Paenibacillus sp. HGF5]
          Length = 472

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 128/249 (51%), Gaps = 27/249 (10%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+++I+ +  Q +     DE   PAS+TKMMT YI+ E ++  +L  +  + V + A   
Sbjct: 83  SAVLIEPSTGQVLLSINADEALPPASMTKMMTEYIVAEKVKQGELAWDDVVTVGENAEKT 142

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L E    T E+  +A+   SAND + A  E I+GSE +F  +M++ AKK+G++ 
Sbjct: 143 VGSRIFLAEGDQHTVEELYIAMAVGSANDATVALAEHIAGSEAEFVTMMNDTAKKMGLKT 202

Query: 174 TIYKNASGL------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
             + N++GL             DK  + +A D A+L   + ++ P + ++ +I+  ++R 
Sbjct: 203 AFFINSTGLSRADMPEKYRPAEDKETVMSAMDTALLAKYIVEDHPDFARFTAIQSHKFRP 262

Query: 222 R---IITNHNKLLNKMHNI-----------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           R    I N+N +L    +I           DG+KTG+T  +G+    +       +++VV
Sbjct: 263 RDTSPIINYNWMLEANKSITNFKAYAYEGLDGLKTGHTNAAGYCFAGTAERDGMRLISVV 322

Query: 268 MGMPTSQER 276
           MG  +   R
Sbjct: 323 MGTKSEGAR 331


>gi|213162143|ref|ZP_03347853.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
          Length = 247

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 106/190 (55%), Gaps = 9/190 (4%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 59  DEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AK++G+ NT ++   GL   
Sbjct: 119 VSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAP 178

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL--NKMHNIDGIKTG 243
            Q +TARD A+LG  L  + P  Y     ++F + N    N N+LL    +H +DG+KTG
Sbjct: 179 GQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLH-VDGMKTG 237

Query: 244 YTRNSGFNIV 253
            T  +G+N+V
Sbjct: 238 TTAGAGYNLV 247


>gi|213857663|ref|ZP_03384634.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 266

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 112/209 (53%), Gaps = 8/209 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT 112
           S I+ID N  ++   +  DE R PASLTKMMT Y+I + +++ K      + V   A AT
Sbjct: 48  SYILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDAWAT 107

Query: 113 QNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
            NP     S ++LK        Q I  +  +S ND   A  +F +GS+  F  LM++   
Sbjct: 108 GNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVN 167

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
            +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  +  ++F +      N 
Sbjct: 168 ALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAVYKEKEFTFNGIRQLNR 227

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTS 255
           N LL +   N+DGIKTG+T  +G+N+V S
Sbjct: 228 NGLLWDNSLNVDGIKTGHTSKAGYNLVAS 256


>gi|255524154|ref|ZP_05391114.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           carboxidivorans P7]
 gi|296186612|ref|ZP_06855014.1| putative D-alanyl-D-alanine carboxypeptidase [Clostridium
           carboxidivorans P7]
 gi|255512139|gb|EET88419.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           carboxidivorans P7]
 gi|296048649|gb|EFG88081.1| putative D-alanyl-D-alanine carboxypeptidase [Clostridium
           carboxidivorans P7]
          Length = 398

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 113/209 (54%), Gaps = 6/209 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +  E + S K+ L+ ++ +S+ A     S + L      T E+ I  + 
Sbjct: 72  PASVTKVMTMLLTMENVDSGKIKLSDKVTISENAKKMGGSSMLLDTGEVRTVEELIKGIG 131

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A  E++ GSE+ F  LM+ +A K+GM++T + N +GL     +TTA D AI
Sbjct: 132 IASGNDAAVAMAEYLGGSEEGFVKLMNERAHKLGMKDTNFNNCTGLSSPGHVTTAYDIAI 191

Query: 197 LGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +   L K+ P   KY      +I + R     + NHNKL+      DG+KTG+T  + + 
Sbjct: 192 MSRELLKH-PDILKYTGTYMETISEGRKSPIGLVNHNKLVRFFKGCDGLKTGFTDEAKYC 250

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           I  +       ++AV+MG PT + R++ A
Sbjct: 251 ISATATRDGVRMLAVIMGSPTYKVRNKDA 279


>gi|239625716|ref|ZP_04668747.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519946|gb|EEQ59812.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 392

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 127/234 (54%), Gaps = 12/234 (5%)

Query: 55  SSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+++++ +  Q+   K  DE R PAS+TK+MTL +IF+ LQS K++L  ++  S  A + 
Sbjct: 36  SAVLMEASTGQVIYEKGADEKRSPASVTKVMTLILIFDALQSGKINLTDEVVTSAHAKSM 95

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+E    T E  I  ++  S ND S A  E+I G+E++F  +M+ +A  +GM N
Sbjct: 96  GGSQVFLEEGEKQTVETLIKCIVIASGNDASVAMAEYIGGTEEEFVRMMNERAAGLGMTN 155

Query: 174 TIYKNASGLHDKNQ-ITTARDQAILGILLRKNFPQYYKYFSIR--------KFRYRNRII 224
           T + +  GL +  + +TTARD AI+   L   +PQ + Y +I         K   +   +
Sbjct: 156 THFVDCCGLTESPEHLTTARDIAIMSRELINKYPQIHNYSTIWMENITHVTKQGTKEFGL 215

Query: 225 TNHNKLLNKMHN--IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           +N NKLL    N  + G+KTG T  + + +  +       ++A +M  P  + R
Sbjct: 216 SNTNKLLKMATNFKVTGLKTGSTSIAKYCLSATAEKDGVRLIATIMAAPDFKAR 269


>gi|253577333|ref|ZP_04854650.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843233|gb|EES71264.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 469

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 135/262 (51%), Gaps = 36/262 (13%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           + +++ +  +P    I+++VN  Q        P  PAS+TKMMT YI+ E ++  K   +
Sbjct: 75  LEVSAAILLEPVSGQILLNVNGEQ--------PLPPASMTKMMTEYIVAELVKQGKFSWD 126

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
             + V + AA    S+++L E    T E+   A+   SAND + A  E+++GSE+ F  +
Sbjct: 127 DVVTVGRNAAQTIGSRIFLAEGDQHTVEELYTAMAIASANDATVALAEYVAGSEQAFVKM 186

Query: 162 MSNKAKKIGMQNTIYKNASGL------------HDKNQITTARDQAILGILLRKNFPQYY 209
           M+++AK++GM+   + N++GL              K  + +A D AIL   +  + P + 
Sbjct: 187 MNDEAKRMGMKTAHFANSTGLDIADMPAEFRPTDGKETVMSALDAAILAKYIVTDHPDFT 246

Query: 210 KYFSIRKFRYRNR---IITNHNKLLNKMHNI-----------DGIKTGYTRNSGFNIVTS 255
           ++ +I+  ++R+R    + N N +L    N+           DG+KTG+T N+G N  T 
Sbjct: 247 RFTTIQSKKFRDRDTAPMVNLNWMLEANKNVTNFKQFAYEGLDGLKTGHTSNAG-NCFTG 305

Query: 256 LRYKDD-PIVAVVMGMPTSQER 276
              ++   +++VVMG  + + R
Sbjct: 306 TAVRNGMRLISVVMGTASDKAR 327


>gi|154686590|ref|YP_001421751.1| DacF [Bacillus amyloliquefaciens FZB42]
 gi|63146679|emb|CAG28930.1| penicillin binding protein [Bacillus amyloliquefaciens FZB42]
 gi|154352441|gb|ABS74520.1| DacF [Bacillus amyloliquefaciens FZB42]
          Length = 389

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 143/267 (53%), Gaps = 18/267 (6%)

Query: 35  LFLSIIMISMASELHAKPKY-----------SSIVIDVNKNQMTGFKQDEPRY-PASLTK 82
           L + I++ + A    AKP             S+++I+ +   +   K    R  PAS+TK
Sbjct: 8   LLIGILLTASAPSAFAKPDGKHTSELAHEAKSAVLIERDTGSILYNKNSRERLAPASMTK 67

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT+ +I E L   K+ ++ ++  S+ AA+   S+++L+     T ++ +  +   S ND
Sbjct: 68  IMTMLLIMEALDKGKIKMSDKVRTSEHAASMGGSQIFLEPGEEMTVKEMLKGIAIASGND 127

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            S A  E+I+GSE+ F   M+ KAK++G+++T +KN +GL +K+  ++A D A +   L 
Sbjct: 128 ASVAMAEYIAGSEEDFVSRMNKKAKELGLKDTSFKNPTGLPEKDHYSSAYDMAKMAKELL 187

Query: 203 K-----NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
           K      F   Y+ + +R+   +   + N N+L+     +DG+KTG+T  + + +  + +
Sbjct: 188 KYDKITQFTGTYEDY-LRENTDKKFWLVNTNRLIKFYPGVDGVKTGFTGEAKYCLTATAK 246

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELI 284
             +  ++AVV G  T +ER+ +  +++
Sbjct: 247 KGNMRVIAVVFGASTPKERNAQVTKML 273


>gi|330811926|ref|YP_004356388.1| cell division-related protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380034|gb|AEA71384.1| putative cell division-related protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 385

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 135/267 (50%), Gaps = 7/267 (2%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQS 95
            ++ M+    +L AK   S +++D +  ++      + R P ASLTK+MT YI    ++ 
Sbjct: 23  FAVEMMPAPPQLAAK---SFVLMDASSGEVLVENNGDQRLPPASLTKLMTAYIATLEIRR 79

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
            ++  N  + VS+ A     S++++K  +  T    +  +I +S ND S A  E I+GSE
Sbjct: 80  GQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDASVALSEHIAGSE 139

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             FA +M+     +GM N+ + N +GL +    ++A D A+L   +    P +Y  +S +
Sbjct: 140 DAFADMMNKTVADLGMTNSHFMNPTGLPNPEHYSSAHDMALLARAIIHEDPAHYAIYSQK 199

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           +F +      N N LL +   +DG+KTG+T  +G+ +V+S       ++AVV G  +   
Sbjct: 200 EFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTSSEVA 259

Query: 276 RDQKALELIT---SFLEKKTLKHQQTH 299
           R  +  +L+T    F E +T   + T 
Sbjct: 260 RAAETQKLLTYGFRFFETQTFYQKGTE 286


>gi|308069568|ref|YP_003871173.1| Penicillin-binding protein dacF precursor (D-alanyl-D-alanine
           carboxypeptidase) [Paenibacillus polymyxa E681]
 gi|305858847|gb|ADM70635.1| Penicillin-binding protein dacF precursor (D-alanyl-D-alanine
           carboxypeptidase) [Paenibacillus polymyxa E681]
          Length = 404

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 132/241 (54%), Gaps = 8/241 (3%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A+EL A    S+I++D +   +   K    + P AS+TK+MT+ +  E +Q  KL L  +
Sbjct: 46  AAEL-APEALSAILMDADTGTVIYEKNSREKLPPASITKIMTMLLTMEAIQDGKLKLTDK 104

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           +  S+ A++   S+++L+     T ++ +  +   S ND S A  E I+GSE+ F  +M+
Sbjct: 105 VRASEYASSMGGSQIFLEPGEEMTVDEMLKGIAMASGNDASVAMAEKIAGSEQAFVGMMN 164

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFR 218
            K +++G+++T + N +GL  +N  ++A D A++   L K +PQ  KY       +RK  
Sbjct: 165 AKVQQLGLKDTHFANCNGLPVENHYSSAHDIAVMSRELLK-YPQITKYTGAYQDYLRKSS 223

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
            +   + N NKL+      DG+KTGYT  + F +  + +     +VAVV+G P ++ R+ 
Sbjct: 224 VKPFWLVNTNKLVRFYTGADGLKTGYTAEAKFCLSATAKRDGLRVVAVVLGEPNTKIRNN 283

Query: 279 K 279
           +
Sbjct: 284 E 284


>gi|146296751|ref|YP_001180522.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410327|gb|ABP67331.1| D-Ala-D-Ala carboxypeptidase DacF, Serine peptidase, MEROPS family
           S11 [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 384

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 131/244 (53%), Gaps = 5/244 (2%)

Query: 46  SELHAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLN 101
           +EL   P+ S+   I++D +  ++   K    + P AS+TK+MT+ +I E ++  KL L+
Sbjct: 29  NELTNSPELSAMSAILVDFDTGRVLFEKNSHEKLPPASITKIMTMILICEAIEKGKLKLS 88

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
            ++  S+ AA+   S++YLKE    T E+ + ++   SAND   A  E ++GS + F  +
Sbjct: 89  DKVIASQNAASLGGSQVYLKENEEMTVEELLKSIAIASANDACVALAEHLAGSVQGFVYM 148

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG-ILLRKNFPQYYKYFSIRKFRYR 220
           M+ KAK++GM +T + N  GL  +   T+A D A++   LL+    + Y    +   R  
Sbjct: 149 MNQKAKELGMLDTNFVNPYGLDAEGHYTSAYDVAVMSRELLKHKLVRNYLTTWVDTVRDG 208

Query: 221 NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
              +TN NKL+       G+KTG T  + F I  S +     ++AV+M  P S+ R  +A
Sbjct: 209 KFGLTNTNKLVRFYRGCTGVKTGSTDKAKFCISASAQRNALHLIAVIMAAPDSKTRFNEA 268

Query: 281 LELI 284
           + L+
Sbjct: 269 VRLL 272


>gi|225390069|ref|ZP_03759793.1| hypothetical protein CLOSTASPAR_03819 [Clostridium asparagiforme
           DSM 15981]
 gi|225043871|gb|EEG54117.1| hypothetical protein CLOSTASPAR_03819 [Clostridium asparagiforme
           DSM 15981]
          Length = 382

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 126/234 (53%), Gaps = 12/234 (5%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+++++ +  Q+   K  D+ R PAS+TK+MTL +IF+ L+S K+ +  ++  S  A + 
Sbjct: 18  SALLMEASTGQVIYEKDADQKRSPASITKIMTLILIFDALESGKIKMTDEVVTSAYAKSM 77

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+E    T E  I  +I  S ND S    E+I G+E++F  +M+ +A  +GM N
Sbjct: 78  GGSQVFLEEGEKQTVETLIKCIIIASGNDASVTMAEYIGGTEQEFVRMMNERAAGLGMTN 137

Query: 174 TIYKNASGLHDK-NQITTARDQAILGILLRKNFPQYYKYFSIR--------KFRYRNRII 224
           T + +  GL D  + +TTARD AI+   L   +PQ + Y +I         K   +   +
Sbjct: 138 THFVDCCGLTDSPDHVTTARDIAIMSRELINRYPQIHNYSTIWMENITHVTKQGTKEFGL 197

Query: 225 TNHNKLLNKMHN--IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           +N NKLL    N  + G+KTG T  + + +  +       ++AVVM  P  + R
Sbjct: 198 SNTNKLLKMATNFTVTGLKTGSTSLAKYCLSATAEKDGVRLIAVVMAAPDFKAR 251


>gi|198284286|ref|YP_002220607.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218665720|ref|YP_002426947.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198248807|gb|ACH84400.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218517933|gb|ACK78519.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 388

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 114/231 (49%), Gaps = 2/231 (0%)

Query: 58  VIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           ++D +  Q+   K +   R PASLTK+MT Y+ ++ +Q   L     IP+S TA     S
Sbjct: 49  LMDYDTGQIIAAKSENLRRAPASLTKLMTAYLTYQAIQGGTLTAQENIPISNTAWKTGGS 108

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
            ++++       +Q +  L+  S ND + A  E + GS+  F  LM++ A ++ + NT Y
Sbjct: 109 SMFVQPNVPANVDQLLHGLLIDSGNDAAVALAEAVGGSQSGFVTLMNDSALRLNLHNTHY 168

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN 236
            N  GL D N  TTA D A L     + FPQ  +    + + Y      + N +L +   
Sbjct: 169 SNVDGLPDNNLYTTALDVAKLSRAFIRQFPQVIQITKEKSYTYNGITQRSWNPVLFRDPT 228

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           +DG+KTG T  SG+ I  +       ++AVV+G P S      A+E +  +
Sbjct: 229 VDGLKTGLTDASGYCIDATAIRNGRRLIAVVLGGP-SWAGSTNAVEALLDY 278


>gi|262370309|ref|ZP_06063635.1| penicillin-binding protein 6B [Acinetobacter johnsonii SH046]
 gi|262314651|gb|EEY95692.1| penicillin-binding protein 6B [Acinetobacter johnsonii SH046]
          Length = 436

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 114/220 (51%), Gaps = 11/220 (5%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLH---LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           R PASLTKMM  YI  + + + KL+   + T  PV  T    + S++YLK+    + +Q 
Sbjct: 56  RAPASLTKMMVAYIALKEINAGKLNKSEILTATPVVSTV-MWDESQMYLKQGEQISVDQL 114

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  L+  SAND +    E ISG    F   M+ +AK +GM  T ++N +G+      +TA
Sbjct: 115 LAGLVVMSANDAAVTLAERISGDIPNFVARMNQEAKALGMTETHFQNPAGITMPEHYSTA 174

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            D A+LG  L    P Y  Y   + F Y  R     N LL +   +DG+KTGYT+ +G+N
Sbjct: 175 HDLALLGQALVNETPDYLYYSKQQSFSYNQRFHRATNVLLKQDPTVDGLKTGYTKAAGYN 234

Query: 252 IVTSLRY----KDDP---IVAVVMGMPTSQERDQKALELI 284
           +  +        D+P   +V +V+G  ++ +R + A  L+
Sbjct: 235 LALTANRPTMNPDNPNRRLVVIVLGTESATKRAEVAHNLM 274


>gi|311068945|ref|YP_003973868.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942]
 gi|310869462|gb|ADP32937.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942]
          Length = 389

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 139/245 (56%), Gaps = 8/245 (3%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           SEL  + K S+++I+ +  ++   K    R  PAS+TK+MT+ +I E L   K+ ++ ++
Sbjct: 31  SELAHEAK-SAVLIERDTGKVLYNKNSHERLAPASMTKIMTMLLIMEALDKGKIKMSDKV 89

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
             S+ AA+   S+++L+     T ++ +  +   S ND S A  E+ISGSE++F   M+ 
Sbjct: 90  RTSEYAASMGGSQIFLEPGEEMTVKEMLKGIAIASGNDSSVAMAEYISGSEEEFVQKMNK 149

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK-----NFPQYYKYFSIRKFRY 219
           KAK++G+++T +KN +GL +K   ++A D A++   L K      F   Y+ + +R+   
Sbjct: 150 KAKELGLKDTTFKNPTGLPEKGHYSSAYDMAMMSKELLKYDKITAFTGTYEDY-LREDTD 208

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           +   + N N+L+     +DG+KTGYT  + + +  S +  +   +AVV G  T ++R+ +
Sbjct: 209 KKFWLVNTNRLIKFYPGVDGVKTGYTGEAKYCLTASAKKGNMRAIAVVFGASTPKDRNAQ 268

Query: 280 ALELI 284
             +++
Sbjct: 269 VTKML 273


>gi|168206139|ref|ZP_02632144.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens E str.
           JGS1987]
 gi|170662449|gb|EDT15132.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens E str.
           JGS1987]
          Length = 402

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 116/209 (55%), Gaps = 6/209 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +  E +   ++ L+ QI VS+TA     S + L      T E+ I  + 
Sbjct: 61  PASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGSTMLLDVGEVRTVEEIIKGIG 120

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A  E++ GSE  F  +M+ +A+++GM+NT +KN +GL  +  ++TA D +I
Sbjct: 121 IASGNDAAVAMAEYLGGSESGFVEMMNKRAQELGMKNTTFKNCTGLPIEGHLSTAYDISI 180

Query: 197 LGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +   L K+ P   KY      +I + R     + NHNKL+      DG+KTG+T ++ + 
Sbjct: 181 MSRELLKH-PTILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTNDAKYC 239

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           I  +       +++V+MG PT + R++ A
Sbjct: 240 ISATATRDGVRMLSVIMGAPTFKIRNRDA 268


>gi|262040030|ref|ZP_06013292.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259042607|gb|EEW43616.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 389

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 124/238 (52%), Gaps = 8/238 (3%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT 112
           S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + + K A A 
Sbjct: 39  SWVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITFDDIVTMGKDAWAK 98

Query: 113 QNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
            NP     S ++LK     +       LI  S ND   A  ++++G + +F  LM+   +
Sbjct: 99  GNPVFDGSSLMFLKPGDRVSVRDLSRGLIVDSGNDACVALADYVAGGQPQFVALMNQYVE 158

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           K+ +++T ++   GL    Q ++A D A+L   +    P  Y  +S +   +      N 
Sbjct: 159 KLHLRDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPDVYHMYSQKSLTWNGITQQNR 218

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  + + R+Q+A +L+
Sbjct: 219 NGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSPKGREQQAAKLL 276


>gi|315644414|ref|ZP_07897547.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus vortex
           V453]
 gi|315280164|gb|EFU43457.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus vortex
           V453]
          Length = 472

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 131/261 (50%), Gaps = 34/261 (13%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           + ++S +  +P    +++ VN         DE   PAS+TKMMT YI+ E ++  +L  +
Sbjct: 79  LDVSSAVLIEPSTGQVLLSVN--------ADEALPPASMTKMMTEYIVAEKVKQGELAWD 130

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
             + V + A     S+++L E    T E+  +A+   SAND + A  E ++GSE++F  L
Sbjct: 131 EMVSVKENAEKTVGSRIFLAEGDQHTVEELYIAMAVGSANDATVALAEHVAGSEEEFVTL 190

Query: 162 MSNKAKKIGMQNTIYKNASGL------------HDKNQITTARDQAILGILLRKNFPQYY 209
           M++ AKK+G++   + N++GL             DK  + +A D A+L   + ++ P + 
Sbjct: 191 MNDTAKKMGLKTAFFINSTGLSRADMPEKYRPAEDKETVMSAMDTALLAKFIVEDHPDFA 250

Query: 210 KYFSIRKFRYRNR---IITNHNKLLNKMHNI-----------DGIKTGYTRNSGFNIVTS 255
           ++ +I+  ++R R    I N+N +L    +I           DG+KTG+T  + +    +
Sbjct: 251 RFTAIQSHKFRPRDTHPIINYNWMLEANKDITNFKKYAYEGLDGLKTGHTNAAKYCFAGT 310

Query: 256 LRYKDDPIVAVVMGMPTSQER 276
                  +++VVMG  +   R
Sbjct: 311 AERDGMRLISVVMGTKSEGAR 331


>gi|182414513|ref|YP_001819579.1| Serine-type D-Ala-D-Ala carboxypeptidase [Opitutus terrae PB90-1]
 gi|177841727|gb|ACB75979.1| Serine-type D-Ala-D-Ala carboxypeptidase [Opitutus terrae PB90-1]
          Length = 341

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 135/257 (52%), Gaps = 25/257 (9%)

Query: 50  AKPKY-SSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS 107
           A+P +  +IV D    N +     D    PAS+TK+MT  ++ + L+S  L L T + + 
Sbjct: 33  AEPTFKGAIVTDAATGNVLLEQNADVVTPPASMTKLMTFAVLSDKLKSGALTLGTVVQIE 92

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
              A    ++++L  +  FT E+ I A++ +SAND S A     +GS   F  LM+ KA+
Sbjct: 93  PEDARMGGTQVFLDPRESFTVEELIYAMMIQSANDASYALARVSAGSVPAFVELMNAKAR 152

Query: 168 KIGMQNTIYKNASGLHDKNQ------ITTARDQAILG--ILLRKNFPQYYKYFSI--RKF 217
           ++GM  T +++  GL  K++      +TT RD + L   +LL  +     KY S+  R F
Sbjct: 153 ELGMTQTTFRSPHGLPPKSRRVSEGDLTTPRDFSRLCRHLLLNTD---VLKYSSVKHRVF 209

Query: 218 ---RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM--PT 272
              R   + + NHN LL K+  +DG+KTGYT  +G+ +  +    D  ++ V+MG   P 
Sbjct: 210 GPQRATPQQMKNHNNLLGKVAGVDGLKTGYTEGAGYCLSATALRNDRRVIVVIMGAFGPN 269

Query: 273 SQE-----RDQKALELI 284
            Q+     RD+K +EL+
Sbjct: 270 GQKDLGRSRDRKTIELL 286


>gi|169343702|ref|ZP_02864701.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens C str.
           JGS1495]
 gi|169298262|gb|EDS80352.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens C str.
           JGS1495]
          Length = 402

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 116/209 (55%), Gaps = 6/209 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +  E +   ++ L+ QI VS+TA     S + L      T E+ I  + 
Sbjct: 61  PASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGSTMLLDVGEVRTVEEIIKGIG 120

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A  E++ GSE  F  +M+ +A+++GM+NT +KN +GL  +  ++TA D +I
Sbjct: 121 IASGNDAAVAMAEYLGGSESGFVEMMNKRAEELGMKNTTFKNCTGLPIEGHLSTAYDISI 180

Query: 197 LGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +   L K+ P   KY      +I + R     + NHNKL+      DG+KTG+T ++ + 
Sbjct: 181 MSRELLKH-PTILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTNDAKYC 239

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           I  +       +++V+MG PT + R++ A
Sbjct: 240 ISATATRDGVRMLSVIMGAPTFKIRNRDA 268


>gi|168180436|ref|ZP_02615100.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum NCTC
           2916]
 gi|226949102|ref|YP_002804193.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A2
           str. Kyoto]
 gi|182668867|gb|EDT80845.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum NCTC
           2916]
 gi|226842614|gb|ACO85280.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A2
           str. Kyoto]
          Length = 407

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 125/224 (55%), Gaps = 7/224 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +  E + S K+ L  ++ +S+ A     S + L      T E+ +  + 
Sbjct: 81  PASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAKKMGGSTMLLDVGEERTVEELLKGIA 140

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A GE+++GSE+ F  +M+++A+K+ M++T +KN +GL  +   T+A D AI
Sbjct: 141 IASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNMKDTSFKNCTGLSAEGHKTSAYDIAI 200

Query: 197 LG--ILLRKNFPQYYKYF--SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           +   +L  K   +Y   +  +I + R     + NHNKL+      DG+KTG+T  + + I
Sbjct: 201 MSRELLKHKQILKYTGTYMETISEGRKSPIGLVNHNKLVRFFKGCDGLKTGFTDEAKYCI 260

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTL 293
             + +     ++AV+MG PT + R++ A +L+    S  E KTL
Sbjct: 261 SATAKKDGVRMLAVIMGAPTYKIRNKDASKLMNYGFSKFECKTL 304


>gi|167745582|ref|ZP_02417709.1| hypothetical protein ANACAC_00273 [Anaerostipes caccae DSM 14662]
 gi|317472823|ref|ZP_07932134.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
 gi|167654894|gb|EDR99023.1| hypothetical protein ANACAC_00273 [Anaerostipes caccae DSM 14662]
 gi|316899742|gb|EFV21745.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
          Length = 394

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 120/234 (51%), Gaps = 8/234 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+M+L +IFE L    L  + ++ VS+ AA+   S+++L+     T +  +  ++
Sbjct: 68  PASVTKVMSLLLIFEELDKGNLKYSDKVTVSEHAASMGGSQVFLEPGESQTVDTMLKCIV 127

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             SAND   +  E I+GSE  F   M+ KAK++GM+NT +KN+ GL  K   T+A D A+
Sbjct: 128 ISSANDAVVSMAEHIAGSEGAFVKRMNEKAKQLGMKNTTFKNSCGLDIKGHETSAYDIAL 187

Query: 197 LGILLRKNFPQYYKYFSI--RKFRYRNR------IITNHNKLLNKMHNIDGIKTGYTRNS 248
           +   L    P  +KY  I   KF +  +       ++N NKLL + +   G+KTG T  +
Sbjct: 188 MSRELTTKHPDIFKYTKIWMDKFTHETKKGTKEFGLSNTNKLLKQYNGCTGLKTGSTSTA 247

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKD 302
            F +  +       ++AVVM    S+ R + A  L+        +    T  KD
Sbjct: 248 KFCLSATATRNGVSLIAVVMASDDSKTRVKDASALLDYGFSHCQVMEDHTKAKD 301


>gi|168184531|ref|ZP_02619195.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf]
 gi|237795263|ref|YP_002862815.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Ba4
           str. 657]
 gi|182672360|gb|EDT84321.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf]
 gi|229263748|gb|ACQ54781.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Ba4
           str. 657]
          Length = 407

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 125/224 (55%), Gaps = 7/224 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +  E + S K+ L  ++ +S+ A     S + L      T E+ +  + 
Sbjct: 81  PASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAKKMGGSTMLLDVGEERTVEELLKGIA 140

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A GE+++GSE+ F  +M+++A+K+ M++T +KN +GL  +   T+A D AI
Sbjct: 141 IASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNMKDTSFKNCTGLSAEGHKTSAYDIAI 200

Query: 197 LG--ILLRKNFPQYYKYF--SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           +   +L  K   +Y   +  +I + R     + NHNKL+      DG+KTG+T  + + I
Sbjct: 201 MSRELLKHKQILKYTGTYMETISEGRKSPIGLVNHNKLVRFFKGCDGLKTGFTDEAKYCI 260

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTL 293
             + +     ++AV+MG PT + R++ A +L+    S  E KTL
Sbjct: 261 SATAKKDGVRMLAVIMGAPTYKIRNKDASKLMNYGFSKFECKTL 304


>gi|52786237|ref|YP_092066.1| DacF [Bacillus licheniformis ATCC 14580]
 gi|163119526|ref|YP_079656.2| penicilin binding protein [Bacillus licheniformis ATCC 14580]
 gi|52348739|gb|AAU41373.1| DacF [Bacillus licheniformis ATCC 14580]
 gi|145903033|gb|AAU24018.2| penicilin binding protein (putative D-alanyl-D-alanine
           carboxypeptidase) [Bacillus licheniformis ATCC 14580]
          Length = 390

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 143/262 (54%), Gaps = 15/262 (5%)

Query: 31  MGKILFLSIIMI----SMASELHAKPKY------SSIVIDVNKNQMTGFKQDEPRYP-AS 79
           + K+L  +II++    ++A E   KP        S+++I+ +  ++   K    + P AS
Sbjct: 5   LSKLLIFTIILMTAPSALAKESAKKPSELADDAKSAVLIERDTGKVMYDKNSREKLPPAS 64

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MT+ +I E L   K+ +  ++  S+ AA+   S+++L+     T E  +  +   S
Sbjct: 65  MTKVMTMLLIMEALDEGKIKMKDKVRTSEYAASMGGSQIFLEPGEEMTVEDMLKGIAIGS 124

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG- 198
            ND S A  E I+GSE++F   M+ KA ++G+++T ++N +GL ++   +TA D A++  
Sbjct: 125 GNDASVAMAEHIAGSEEEFVKRMNEKAAELGLKDTSFQNTTGLPEEGHYSTAYDMALMAK 184

Query: 199 -ILLRKNFPQYYKYFS--IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
            +L  +N  ++   +   +R+   +   + N N+L+     +DG+KTG+T  + + +  S
Sbjct: 185 ELLKYENITKFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGFTNEAKYCLTAS 244

Query: 256 LRYKDDPIVAVVMGMPTSQERD 277
            +  +  ++AVV G  T +ER+
Sbjct: 245 AKKGNMRVIAVVFGASTPKERN 266


>gi|15895333|ref|NP_348682.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum
           ATCC 824]
 gi|15025050|gb|AAK80022.1|AE007709_6 D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum
           ATCC 824]
 gi|325509478|gb|ADZ21114.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum EA
           2018]
          Length = 404

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 141/273 (51%), Gaps = 18/273 (6%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKK 97
           S I +   S +  +P   +I+ + N +        E   PAS+TK+MT+ +  E + S K
Sbjct: 45  SGINVEAKSAILLEPSTGAIIYEKNSH--------EKFAPASVTKIMTMLLTMEAVDSGK 96

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           + L  ++ VS+ A     S + L      T E+ +  +   S ND + A  E++ GS++ 
Sbjct: 97  IKLTDKVTVSENAKKMGGSSMLLDTGEVRTVEELLKGIAIASGNDAAVAMAEYLGGSQEN 156

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF----- 212
           F  +M+ KA++IGM++T +KN +GL+    +TTA D +++   L K+ P+  K+      
Sbjct: 157 FVNMMNKKAQEIGMKDTSFKNCTGLNADGHMTTAYDISLMSRELLKH-PKILKFTGTYME 215

Query: 213 SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           +I + R     + NHNKL+      DG+KTG+T  + + I  +    +  ++A++MG PT
Sbjct: 216 TISEGRKTPIALVNHNKLVRFFKGCDGLKTGFTDEAKYCISATACKDNVRMLAIIMGAPT 275

Query: 273 SQERDQKALELI----TSFLEKKTLKHQQTHRK 301
            + R++ A  L+    + F  KK ++     +K
Sbjct: 276 YKVRNRDASMLMNYGFSKFTAKKVVEKDSVVKK 308


>gi|296103671|ref|YP_003613817.1| D-alanyl-D-alanine carboxypeptidase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058130|gb|ADF62868.1| D-alanyl-D-alanine carboxypeptidase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 388

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 126/238 (52%), Gaps = 8/238 (3%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT 112
           S +++D    Q +T   + + R PASLTK+MT Y++   + S ++  +  + V + A A 
Sbjct: 38  SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAK 97

Query: 113 QNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
            NP     S ++LKE    +       LI  S ND   A  + ++G + +F  +M++  +
Sbjct: 98  GNPVFDGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADHVAGGQPQFVKMMNDYVQ 157

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +      N 
Sbjct: 158 KLNLRDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNR 217

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N LL +K  N+DG+KTG+T  +GFN++ S       ++AVVMG  + + R+ +A +L+
Sbjct: 218 NGLLWDKTMNVDGLKTGHTSGAGFNLIASTVDGQRRLIAVVMGADSPKGREDQARKLL 275


>gi|182625695|ref|ZP_02953464.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens D str.
           JGS1721]
 gi|177909097|gb|EDT71572.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens D str.
           JGS1721]
          Length = 402

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 116/209 (55%), Gaps = 6/209 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +  E +   ++ L+ QI VS+TA     S + L      T E+ I  + 
Sbjct: 61  PASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGSTMLLDVGEVRTVEEIIKGIG 120

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A  E++ GSE  F  +M+ +A+++GM+NT +KN +GL  +  ++TA D +I
Sbjct: 121 IASGNDAAVAMAEYLGGSESGFVEMMNKRAQELGMKNTTFKNCTGLPIEGHLSTAYDISI 180

Query: 197 LGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +   L K+ P   KY      +I + R     + NHNKL+      DG+KTG+T ++ + 
Sbjct: 181 MSRELLKH-PTILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTNDAKYC 239

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           I  +       +++V+MG PT + R++ A
Sbjct: 240 ISATATRDGVRMLSVIMGAPTFKIRNRDA 268


>gi|156933395|ref|YP_001437311.1| D-alanyl-D-alanine carboxypeptidase [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156531649|gb|ABU76475.1| hypothetical protein ESA_01208 [Cronobacter sakazakii ATCC BAA-894]
          Length = 390

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 125/238 (52%), Gaps = 8/238 (3%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT 112
           S +++D    Q +    + + R PASLTK+MT Y++   + S ++  +  + V K A A 
Sbjct: 40  SYVLMDYTTGQILAANNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDVVTVGKDAWAK 99

Query: 113 QNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
            NP     S ++LK     T       LI  S ND   A  ++++G + +F  +M++  +
Sbjct: 100 DNPVFEGSSLMFLKAGDRVTVRDLSRGLIVDSGNDACVALADYVAGGQPQFVAMMNDYVQ 159

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           K+G+++T ++   GL    Q ++A D A+L   +    P +Y  +S +   +      N 
Sbjct: 160 KLGLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPAFYHMYSEKSLTWNGITQQNR 219

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N LL +K  N+DG+KTG+T  +GFN++ S       ++AV+MG  + + R+ +A +L+
Sbjct: 220 NGLLWDKTLNVDGLKTGHTSGAGFNLIASSVDGKRRLIAVIMGADSPKGREDQARKLL 277


>gi|110802732|ref|YP_699090.1| penicillin-binding protein dacf precursor [Clostridium perfringens
           SM101]
 gi|110683233|gb|ABG86603.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens SM101]
          Length = 402

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 116/209 (55%), Gaps = 6/209 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +  E +   ++ L+ QI VS+TA     S + L      T E+ I  + 
Sbjct: 61  PASVTKVMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGSTMLLDVGEVRTVEEIIKGIG 120

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A  E++ GSE  F  +M+ +A+++GM+NT +KN +GL  +  ++TA D +I
Sbjct: 121 IASGNDAAVAMAEYLGGSESGFVEMMNKRAEELGMKNTTFKNCTGLPIEGHLSTAYDISI 180

Query: 197 LGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +   L K+ P   KY      +I + R     + NHNKL+      DG+KTG+T ++ + 
Sbjct: 181 MSRELLKH-PTILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTNDAKYC 239

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           I  +       +++V+MG PT + R++ A
Sbjct: 240 ISATATRDGVRMLSVIMGAPTFKIRNRDA 268


>gi|319645178|ref|ZP_07999411.1| DacF protein [Bacillus sp. BT1B_CT2]
 gi|317392987|gb|EFV73781.1| DacF protein [Bacillus sp. BT1B_CT2]
          Length = 395

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 143/262 (54%), Gaps = 15/262 (5%)

Query: 31  MGKILFLSIIMI----SMASELHAKPKY------SSIVIDVNKNQMTGFKQDEPRYP-AS 79
           + K+L  +II++    ++A E   KP        S+++I+ +  ++   K    + P AS
Sbjct: 10  LSKLLIFTIILMTAPSALAKESAKKPSELADDAKSAVLIERDTGKVMYDKNSREKLPPAS 69

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MT+ +I E L   K+ +  ++  S+ AA+   S+++L+     T E  +  +   S
Sbjct: 70  MTKVMTMLLIMEALDEGKIKMKDKVRTSEYAASMGGSQIFLEPGEEMTVEDMLKGIAIGS 129

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG- 198
            ND S A  E I+GSE++F   M+ KA ++G+++T ++N +GL ++   +TA D A++  
Sbjct: 130 GNDASVAMAEHIAGSEEEFVKRMNEKAAELGLKDTSFQNTTGLPEEGHYSTAYDMALMAK 189

Query: 199 -ILLRKNFPQYYKYFS--IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
            +L  +N  ++   +   +R+   +   + N N+L+     +DG+KTG+T  + + +  S
Sbjct: 190 ELLKYENITKFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGFTNEAKYCLTAS 249

Query: 256 LRYKDDPIVAVVMGMPTSQERD 277
            +  +  ++AVV G  T +ER+
Sbjct: 250 AKKGNMRVIAVVFGASTPKERN 271


>gi|262372029|ref|ZP_06065308.1| penicillin-binding protein 6B [Acinetobacter junii SH205]
 gi|262312054|gb|EEY93139.1| penicillin-binding protein 6B [Acinetobacter junii SH205]
          Length = 439

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 120/220 (54%), Gaps = 11/220 (5%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLH---LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           R PASLTKMM  YI  + +++ KL    + T  PV  T    + S++YLK     + +Q 
Sbjct: 56  RAPASLTKMMVAYIALKEIEAGKLRKEDILTATPVVNTV-MWDESQMYLKTGEKISVDQL 114

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  LI  SAND +    E ISGS  +F   M+ +A+ +GM++T + N +G+   +  +TA
Sbjct: 115 LAGLIVMSANDAAVTLAEKISGSVPQFVARMNQEAQALGMKDTHFSNPAGITMPDHYSTA 174

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            D  +L   + ++ P+Y  Y  +  F Y  R+    N  L      DG+KTGYT+ +G+N
Sbjct: 175 ADLGLLAKAIVQDTPEYLYYSKMPSFSYNQRVHHATNLALKMDPTADGLKTGYTKAAGYN 234

Query: 252 I-VTSLRYKDDP------IVAVVMGMPTSQERDQKALELI 284
           + +T+ R   +P      ++ +V+G P++ +R + A +L+
Sbjct: 235 LALTAERPTFNPDVEKRRLIVIVLGTPSAVKRAEVAHKLM 274


>gi|323142851|ref|ZP_08077563.1| D-alanyl-D-alanine carboxypeptidase DacA [Succinatimonas hippei YIT
           12066]
 gi|322417393|gb|EFY08015.1| D-alanyl-D-alanine carboxypeptidase DacA [Succinatimonas hippei YIT
           12066]
          Length = 429

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 119/205 (58%), Gaps = 4/205 (1%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGI 132
           +PASLTKMMT Y+I   +++ +L  + Q+ +++ A ++N    SK++++     + +   
Sbjct: 94  WPASLTKMMTSYVIGMEIKAGRLKPDDQVMITEEAWSKNYSDSSKMFIEVGDTVSVDSLN 153

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             +I +S ND   A    ++GSE  F  +M+  AK++G+ +T + N  GL  ++  +TA 
Sbjct: 154 KGIIIQSGNDACVAMAIHLAGSEAGFVSVMNTYAKQLGLNHTHFSNVHGLFSEDNYSTAY 213

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFN 251
           D A+LG  L ++ P+ Y  ++ ++F +     +N N+LL +K  N+DGIKTG+    G+N
Sbjct: 214 DMALLGRALIRDLPEEYSIYAQKEFTFNGIKQSNRNRLLWDKTLNVDGIKTGHLSQVGYN 273

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQER 276
           +V S    +  ++A V+G  +  +R
Sbjct: 274 LVASAPSGNMRLIASVIGAKSESQR 298


>gi|331085114|ref|ZP_08334200.1| hypothetical protein HMPREF0987_00503 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407897|gb|EGG87387.1| hypothetical protein HMPREF0987_00503 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 397

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 128/239 (53%), Gaps = 9/239 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+++++ +  ++   KQ +E R PAS+TK+MT+ +I + ++  K+ L  ++ VS+ AA+ 
Sbjct: 46  SAVLMEASTGKIIYEKQKEEERPPASVTKVMTMLLILDAVEDGKIKLEDEVTVSEYAASM 105

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+     T +  +  +   SAND   A  E+ISGSE+ F   M+ +AK +GM++
Sbjct: 106 GGSQVFLEPGEVQTVDTMLKCIAVASANDACVAMSEYISGSEEAFVEQMNVRAKGLGMEH 165

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--------IT 225
           T + N +GL     +TTA D A++   L    P+  KY  I      ++         ++
Sbjct: 166 THFVNCNGLDADGHLTTAYDIALMSRELITKHPEIEKYSMIWMENITHKTNKGTSEFGLS 225

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N NKL+       G+KTG T  + F I  + R     ++AV+M  P S+ R + A  L+
Sbjct: 226 NTNKLVRHYPYATGLKTGSTSKAKFCISATARKDGMDLIAVIMAAPDSKMRVKDATTLL 284


>gi|56963557|ref|YP_175288.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16]
 gi|56909800|dbj|BAD64327.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16]
          Length = 388

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 131/234 (55%), Gaps = 7/234 (2%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQDEPRY--PASLTKMMTLYIIFEYLQSKKLHLNTQIPVS 107
           A+   S+I+I+ +  ++  F++D      PAS+TK+MT+ +I E ++   +     + VS
Sbjct: 34  AENAASAILIERDTGEVL-FEKDSDNMLPPASMTKIMTMLLIMEAIEEGTIKYEDMVTVS 92

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
           + AA+   S+++L+     + +  + A+   S ND + A  E I G+E++F  +M+ KA 
Sbjct: 93  ENAASMGGSQVFLEPGEEMSVDDLLKAIAIASGNDAAVAMAEHIGGTEQEFVKMMNAKAA 152

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILG--ILLRKNFPQYYKYFS--IRKFRYRNRI 223
           ++G++NT ++N +GL + +  ++A D A++   +L  +N   Y   +   +RK   +   
Sbjct: 153 ELGLENTQFQNPNGLPEADHYSSAHDLAVMAKELLKYENITSYTGIYEDYLRKGTDKEFW 212

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           + N NKL+     +DG+KTG+T+ + + +  +       ++AVVMG  T +ER+
Sbjct: 213 LVNTNKLVKFYPGVDGLKTGFTQEAKYGLTATAEKNGMRVIAVVMGAKTPKERN 266


>gi|317132116|ref|YP_004091430.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ethanoligenens harbinense
           YUAN-3]
 gi|315470095|gb|ADU26699.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ethanoligenens harbinense
           YUAN-3]
          Length = 419

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 112/213 (52%), Gaps = 1/213 (0%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           E  YPAS++K+MT  ++ E +++ KLH   ++ VS  A++   S ++L+     T     
Sbjct: 95  EKMYPASISKIMTELLVLEAIENGKLHFTDKVSVSAHASSMGGSDIWLEPGEVMTVLDLF 154

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
            A++  SAND + A  E ++GSE  F  LM+ KAK++GM +T + NA+GL     +T+A 
Sbjct: 155 KAMVVNSANDAAVALAEKVAGSEPAFVNLMNRKAKELGMNDTNFTNATGLDADGNLTSAY 214

Query: 193 DQAILG-ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           D  ++   LLR      Y    +   R     + N N+L+      +G+KTG T  +G+ 
Sbjct: 215 DVMLMSRELLRHKEIFNYTTIWMDSLRGGKTALFNTNRLIRFYQGANGLKTGSTGKAGYC 274

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +  +       ++AVVM  PT QER   A  L+
Sbjct: 275 LSGTALRDGMQLIAVVMNCPTLQERFTAAGTLL 307


>gi|260598500|ref|YP_003211071.1| D-alanyl-D-alanine carboxypeptidase [Cronobacter turicensis z3032]
 gi|260217677|emb|CBA32019.1| D-alanyl-D-alanine carboxypeptidase dacD [Cronobacter turicensis
           z3032]
          Length = 412

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 125/238 (52%), Gaps = 8/238 (3%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT 112
           S +++D    Q +    + + R PASLTK+MT Y++   + S ++  +  + V K A A 
Sbjct: 62  SYVLMDYTTGQILAANNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDVVTVGKDAWAK 121

Query: 113 QNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
            NP     S ++LK     T       LI  S ND   A  ++++G + +F  +M++  +
Sbjct: 122 DNPVFEGSSLMFLKAGDRVTVRDLSRGLIVDSGNDACVALADYVAGGQPQFVSMMNDYVQ 181

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           K+G+++T ++   GL    Q ++A D A+L   +    P +Y  +S +   +      N 
Sbjct: 182 KLGLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPAFYHMYSEKSLTWNGITQQNR 241

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N LL +K  N+DG+KTG+T  +GFN++ S       ++AV+MG  + + R+ +A +L+
Sbjct: 242 NGLLWDKTLNVDGLKTGHTSGAGFNLIASSVDGKRRLIAVIMGADSPKGREDQARKLL 299


>gi|325661128|ref|ZP_08149755.1| hypothetical protein HMPREF0490_00488 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472635|gb|EGC75846.1| hypothetical protein HMPREF0490_00488 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 394

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 128/239 (53%), Gaps = 9/239 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+++++ +  ++   KQ +E R PAS+TK+MT+ +I + ++  K+ L  ++ VS+ AA+ 
Sbjct: 60  SAVLMEASTGKIIYEKQKEEERPPASVTKVMTMLLILDAVEDGKIKLEDEVTVSEYAASM 119

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+     T +  +  +   SAND   A  E+ISGSE+ F   M+ +AK +GM++
Sbjct: 120 GGSQVFLEPGEVQTVDTMLKCIAVASANDACVAMSEYISGSEEAFVEQMNARAKGLGMEH 179

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--------IT 225
           T + N +GL     +TTA D A++   L    P+  KY  I      ++         ++
Sbjct: 180 THFVNCNGLDADGHLTTAYDIALMSRELITKHPEIEKYSMIWMENITHKTNKGTSEFGLS 239

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N NKL+       G+KTG T  + F I  + R     ++AV+M  P S+ R + A  L+
Sbjct: 240 NTNKLVRHYPYATGLKTGSTSKAKFCISATARKDGMDLIAVIMAAPDSKMRVKDATTLL 298


>gi|134298966|ref|YP_001112462.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
           MI-1]
 gi|134051666|gb|ABO49637.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
           MI-1]
          Length = 403

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 122/212 (57%), Gaps = 5/212 (2%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           R  AS+TK+MT+ +I E    +++ ++ ++  S+ A +   S+++L+     T ++ +++
Sbjct: 78  RPMASVTKLMTMLLICEAESQERIKMSDKVVASEHACSMGGSQIFLEPGEEMTAKEMLIS 137

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           + T SAND S A  EFI+GS++ F  +M+ KAKK+G++NT + N +GL  +N  T+A D 
Sbjct: 138 IATGSANDASVAMAEFIAGSQEAFVSMMNEKAKKMGLKNTHFSNPTGLPIENHYTSAYDM 197

Query: 195 A-ILGILLRKNFPQYYKYFSIRKFRYRNRI--ITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           A +L   LR  +P + +  SI ++  R     + N NKLL      D  KTG+T  + + 
Sbjct: 198 AQVLRECLR--YPLFREVSSIYEYDLRGGDFKLWNTNKLLKWYAGADAGKTGWTNEASYC 255

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           +  S +     +V+VV+G P  +   Q+ +++
Sbjct: 256 LAASAKRDSLRLVSVVLGCPMPRTHFQETIKI 287


>gi|218133227|ref|ZP_03462031.1| hypothetical protein BACPEC_01091 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992100|gb|EEC58104.1| hypothetical protein BACPEC_01091 [Bacteroides pectinophilus ATCC
           43243]
          Length = 400

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 113/221 (51%), Gaps = 8/221 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE  +PAS+TK+MTL +IF+ L   K+ L   + VS+ AA+   S+++L+     T    
Sbjct: 66  DETLHPASITKIMTLILIFDALSENKITLEENVTVSEHAASMGGSQVFLEAGEKQTVNTM 125

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           I  +   SAND S A  E I GSE+ F   M+ +A+ +GM  T + N  GL     + TA
Sbjct: 126 IKCISVASANDASVAMAEHIWGSEQTFVDKMNERAQGLGMSGTHFVNCCGLDTDGHMMTA 185

Query: 192 RDQAILGILLRKNFPQYYKYFSIR--KFRYRNR------IITNHNKLLNKMHNIDGIKTG 243
           RD AI+   L   +PQ ++Y  I      +  R       ++N NKL+ +     G+KTG
Sbjct: 186 RDVAIMSRELITRYPQIHEYSGIWMDTITHNTRRGESEFGLSNTNKLIKQYEWATGLKTG 245

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            T  +   +  +       ++AVVM  P S+ R + A+ L+
Sbjct: 246 STGLAKCCLSATAEKDGIELIAVVMAAPNSKTRFKDAISLL 286


>gi|307130748|ref|YP_003882764.1| D-alanyl-D-alanine carboxypeptidase [Dickeya dadantii 3937]
 gi|306528277|gb|ADM98207.1| D-alanyl-D-alanine carboxypeptidase [Dickeya dadantii 3937]
          Length = 399

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 126/237 (53%), Gaps = 8/237 (3%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQN 114
           I+ID    ++      + R  PASLTK+M+ Y+I + ++  K+    ++ V K A AT N
Sbjct: 42  ILIDYASGRVLAESNADARLDPASLTKIMSSYVIGQAIKVGKITPEDKVTVGKDAWATGN 101

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S ++LK        +    ++ +S ND S A  ++++GS+  F  LM+  A  +
Sbjct: 102 PALRGSSLMFLKPGDQIPVSELNKGMVIQSGNDASIALADYVAGSQDAFVSLMNQYAATL 161

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+ NT +    GL    Q +TARD A L   L ++ P  Y   S ++F + N    N N+
Sbjct: 162 GLANTHFLTVHGLDTPGQYSTARDMARLTQALIRDVPGEYALHSEKEFTFNNIRQPNRNR 221

Query: 230 LLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL   +  +DG+KTGYT  +G ++V S    D  +++VV+G P+   R +++ +L+T
Sbjct: 222 LLWSGNLRVDGVKTGYTGGAGHSLVASAVDSDMRLISVVLGAPSDAVRFRESEKLLT 278


>gi|310642625|ref|YP_003947383.1| d-ala-d-ala carboxypeptidase dacf; serine peptidase; merops family
           s11 [Paenibacillus polymyxa SC2]
 gi|309247575|gb|ADO57142.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Paenibacillus polymyxa SC2]
          Length = 397

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 132/244 (54%), Gaps = 8/244 (3%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHL 100
           +  A+EL A    S+I++D +   +   K    + P AS+TK+MT+ +  E +   KL L
Sbjct: 36  VGSAAEL-APEALSAILMDADTGTVIYEKNSREKLPPASITKIMTMLLTMEAIHDGKLKL 94

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
             ++  S+ A++   S+++L+     T ++ +  +   S ND S A  E I+GSE+ F  
Sbjct: 95  TDKVRASEYASSMGGSQIFLEPGEEMTVDEMLKGIAMASGNDASVAMAEKIAGSEQAFVE 154

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IR 215
           +M+ K +++G+++T + N +GL  +N  ++A D A++   L K +PQ  KY       +R
Sbjct: 155 MMNAKVQQLGLKDTHFANCNGLPVENHYSSAHDIAVMSRELLK-YPQITKYTGAYQDYLR 213

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           K   +   + N NKL+      DG+KTGYT  + F +  + +     +VAVV+G P ++ 
Sbjct: 214 KSSVKPFWLVNTNKLVRFYTGADGLKTGYTSEAKFCLSATAKRDGLRVVAVVLGEPNTKI 273

Query: 276 RDQK 279
           R+ +
Sbjct: 274 RNNE 277


>gi|325478993|gb|EGC82094.1| serine-type D-Ala-D-Ala carboxypeptidase [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 403

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 138/274 (50%), Gaps = 25/274 (9%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVN------KNQMTGF-----KQDEPRYPASLTKMM 84
            LSI +    S  +AK +   + +D N       N+ TG        DE R  ASLTK+M
Sbjct: 11  LLSIFIFLFTSMAYAKGEGRIVGLDENVSAYLIGNEETGDIYYEKNADEVRPIASLTKLM 70

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           T Y++ + ++  K+ L+T +   K A    +   S L LKE   ++ E+ +  LI  S N
Sbjct: 71  TFYLVRDAIEEGKISLDTNVKADKRAEELTSWEYSSLGLKENETYSVEELLQGLIAVSGN 130

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL---HDKNQITTARDQAILG 198
           D +    + +SGSE+ F   M+ KAK++G+++  Y NASG+    DK  +++ARD   L 
Sbjct: 131 DCAHLLAKAVSGSEEAFTKKMNEKAKELGLESQKYYNASGIDTEDDKENVSSARDLYKLS 190

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNK--LLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           + L K +P    Y S+ +     + I   +   L N++  +DG+KTG T  +G+ ++T+L
Sbjct: 191 MDLVKKYPDILNYSSMDEVNIPGKGIKKDSTIPLKNEIDGVDGLKTGTTEKAGYCLITTL 250

Query: 257 RYK-----DD-PIVAVVMGMPTSQERDQKALELI 284
             K     DD   + VV+G      RD    +LI
Sbjct: 251 DMKELDGNDDFRCLGVVLGADEKDIRDSVMSDLI 284


>gi|304407014|ref|ZP_07388668.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus
           curdlanolyticus YK9]
 gi|304344001|gb|EFM09841.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus
           curdlanolyticus YK9]
          Length = 398

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 125/231 (54%), Gaps = 7/231 (3%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D +   +   K    R P AS+TK+MT+ +I E L   +L L  ++  S+ A++ 
Sbjct: 50  SAVLMDADSGTVIFDKNSHDRLPPASITKIMTMLLIMEALDDGRLKLTDKVSASEYASSM 109

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+     + ++ I  +   S ND S A  E I GSE +F  +M+ KA+++GM++
Sbjct: 110 GGSQIFLEPGEEMSVDEMIKGIALASGNDASVAMAEKIGGSEAEFVKMMNEKAQQLGMKD 169

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHN 228
           T + N +GL   +  ++A D AI+   L K+  Q  KY       +RK   +   + N N
Sbjct: 170 THFANCNGLPVADHYSSAHDIAIMSRELLKH-TQITKYTGMYQDYLRKTSEKPFWLVNTN 228

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           KL+      DG+KTG+T  + F +  + R     ++AVVMG P ++ R+ +
Sbjct: 229 KLVWFYTGADGLKTGFTNEAKFCLSATARRDGLRVIAVVMGEPNTKTRNAE 279


>gi|169795133|ref|YP_001712926.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein
           [Acinetobacter baumannii AYE]
 gi|213158204|ref|YP_002320255.1| D-ala-D-ala-carboxypeptidase penicillin-binding protein
           [Acinetobacter baumannii AB0057]
 gi|215482680|ref|YP_002324876.1| Penicillin-binding protein 6B precursor [Acinetobacter baumannii
           AB307-0294]
 gi|301345223|ref|ZP_07225964.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii AB056]
 gi|301511561|ref|ZP_07236798.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii AB058]
 gi|301596993|ref|ZP_07242001.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii AB059]
 gi|332853987|ref|ZP_08435103.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6013150]
 gi|332869733|ref|ZP_08438921.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6013113]
 gi|169148060|emb|CAM85923.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein
           [Acinetobacter baumannii AYE]
 gi|193077983|gb|ABO12897.2| putative D-ala-D-ala-carboxypeptidase penicillin-binding protein
           [Acinetobacter baumannii ATCC 17978]
 gi|213057364|gb|ACJ42266.1| D-ala-D-ala-carboxypeptidase penicillin-binding protein
           [Acinetobacter baumannii AB0057]
 gi|213986927|gb|ACJ57226.1| Penicillin-binding protein 6B precursor [Acinetobacter baumannii
           AB307-0294]
 gi|332728269|gb|EGJ59651.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6013150]
 gi|332732635|gb|EGJ63868.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6013113]
          Length = 439

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 117/219 (53%), Gaps = 9/219 (4%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT--QNPSKLYLKEKTYFTTEQGI 132
           R PASLTKMM  YI  + +++ KL LN  I  +   +    + S++YLK     + +Q +
Sbjct: 56  RAPASLTKMMVAYIALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLL 115

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             LI  SAND +    E ISG    F   M+ +A+ +GM++T + N +G+   +  TTA 
Sbjct: 116 AGLIVMSANDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPAGITMPDHYTTAH 175

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           D ++L   +    P+Y  Y  +  F Y  R     N  L    ++DG+KTGYT+ +G+N+
Sbjct: 176 DLSLLSQAVIHQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNL 235

Query: 253 -VTSLRYKDDP------IVAVVMGMPTSQERDQKALELI 284
            +T+ R    P      ++ +V+G P++ +R + A +L+
Sbjct: 236 ALTASRPSFSPNLPQRRLLVIVLGTPSAVKRAEIADKLM 274


>gi|291613195|ref|YP_003523352.1| beta-lactamase [Sideroxydans lithotrophicus ES-1]
 gi|291583307|gb|ADE10965.1| Beta-lactamase [Sideroxydans lithotrophicus ES-1]
          Length = 419

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 117/210 (55%), Gaps = 2/210 (0%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQI-PVSKTAATQN-PSKLYLKEKTYFTTEQGILA 134
           PA LTK+MT Y++F  ++  KL L  ++ P +     QN   ++YL      + E+ +  
Sbjct: 97  PAQLTKLMTAYVVFSAIKQGKLSLTRKLLPSAYATRMQNDEPRMYLTAGKEVSVEELLRG 156

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           LI +SAND +    E ++  E   A  M+N+A+++G+++T + NA+G  D    ++A D 
Sbjct: 157 LIVQSANDAARVLAETLANHEMALADAMNNEAQQLGLKDTHFVNATGTPDAQHYSSAHDL 216

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
           A++   L ++FP+YY  +S R+++Y      N N+LL     +DG+ TG   +  F +V 
Sbjct: 217 ALIAAALVRDFPEYYHIYSQREYQYNGINQFNRNRLLWMDPFVDGLATGNNESEEFYMVA 276

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           S +  +  +++VV+G  T + R  ++  L+
Sbjct: 277 SAKRDERRLISVVIGTATEKLRSSESQRLL 306


>gi|269104718|ref|ZP_06157414.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161358|gb|EEZ39855.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 414

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 144/265 (54%), Gaps = 12/265 (4%)

Query: 33  KILFLSIIMI----SMASELHAKPKYSS---IVIDVNKNQM-TGFKQDEPRYPASLTKMM 84
           +++F S ++I    S ++ L   P   +   +++  N  Q+  G    +P  PASLTK+M
Sbjct: 11  RLIFASCLVIPSFYSHSAYLLDPPDIDAKAWVLMSYNTGQIIAGDNLHKPLAPASLTKIM 70

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSAN 141
           T +++ E +++  + L+  + +S+ A  +     SK++L      + E  +  +I  S N
Sbjct: 71  TTFVVGEEIKAGNIQLSDMVTISENAWGKKFPGSSKMFLNVGDSVSVEDLLRGVIVSSGN 130

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D + A  E ++G +  F  +M+  A++ GM+++ + N  GL   +Q T+A D A+L    
Sbjct: 131 DATVALAEHVAGHQSAFIKMMNQYAERYGMKDSYFSNPHGLDADDQTTSAYDMALLTRAF 190

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
            +  P  Y     + F + +    N N LL ++  ++DG+KTGYT+ +G+++V+S +  +
Sbjct: 191 IQEVPDIYDMHKEKSFTFGDIKQGNRNALLWDETLHVDGVKTGYTKQAGYSLVSSAKNGE 250

Query: 261 DPIVAVVMGMPTSQERDQKALELIT 285
             ++AVV+G  +++ R  ++ +L++
Sbjct: 251 QRLIAVVLGTKSAKARRLESKQLLS 275


>gi|184159011|ref|YP_001847350.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii ACICU]
 gi|332874790|ref|ZP_08442660.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6014059]
 gi|183210605|gb|ACC58003.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii ACICU]
 gi|322508991|gb|ADX04445.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii
           1656-2]
 gi|323518975|gb|ADX93356.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332737051|gb|EGJ68008.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6014059]
          Length = 439

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 117/219 (53%), Gaps = 9/219 (4%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT--QNPSKLYLKEKTYFTTEQGI 132
           R PASLTKMM  YI  + +++ KL LN  I  +   +    + S++YLK     + +Q +
Sbjct: 56  RAPASLTKMMVAYIALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLL 115

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             LI  SAND +    E ISG    F   M+ +A+ +GM++T + N +G+   +  TTA 
Sbjct: 116 AGLIVMSANDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPAGITMPDHYTTAH 175

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           D ++L   +    P+Y  Y  +  F Y  R     N  L    ++DG+KTGYT+ +G+N+
Sbjct: 176 DLSLLSQAVIHQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNL 235

Query: 253 -VTSLRYKDDP------IVAVVMGMPTSQERDQKALELI 284
            +T+ R    P      ++ +V+G P++ +R + A +L+
Sbjct: 236 ALTASRPSFSPNLPQRRLLVIVLGTPSAVKRAEIADKLM 274


>gi|78043555|ref|YP_360781.1| D-alanyl-D-alanine carboxypeptidase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995670|gb|ABB14569.1| D-alanyl-D-alanine carboxypeptidase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 377

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 110/199 (55%), Gaps = 7/199 (3%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MTL +  E ++  K++L   + VS+ AA+   S+LY+     F+ +  ++A+  
Sbjct: 56  ASVTKLMTLLLAIEAVEKGKVNLEDIVKVSEEAASMGGSQLYMYAGEEFSFKDLLMAVAV 115

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            SAND   A  E ++G+E+ F   M+ KA+++GM NT + N+ G  D N  +T  D   L
Sbjct: 116 ASANDACVAVAETVAGNEQAFVEEMNKKAEELGMTNTHFVNSYGFDDPNHYSTCYD---L 172

Query: 198 GILLRKNF--PQYYKYFSIRKFRYRNRIIT--NHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            ILLR+    P + +   I++F  R       N NKLL     +D  KTG+T  +G+ + 
Sbjct: 173 AILLREAIKHPLFLELSQIKEFTLRGGETRRFNTNKLLWYYRGVDAGKTGWTEEAGYCLA 232

Query: 254 TSLRYKDDPIVAVVMGMPT 272
           ++    D  ++AVV+G P 
Sbjct: 233 STASRDDLRLIAVVLGCPV 251


>gi|260773924|ref|ZP_05882839.1| D-alanyl-D-alanine carboxypeptidase [Vibrio metschnikovii CIP
           69.14]
 gi|260610885|gb|EEX36089.1| D-alanyl-D-alanine carboxypeptidase [Vibrio metschnikovii CIP
           69.14]
          Length = 388

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 116/213 (54%), Gaps = 4/213 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + ++   +  + Q+ +S+ A  +N    SK++++  T         
Sbjct: 61  PASLTKLMTSYVAGQEMKRGNISPDDQVVISQRAWARNFPDSSKMFIEVGTKVNMMDLYR 120

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GSE  F  LM++ A  +G+ NT + N  GL      +T  D
Sbjct: 121 GLIVQSGNDASVAIAEHVAGSENAFVDLMNSWAATLGLTNTAFTNPHGLDSSGLYSTPYD 180

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A L   + ++ P+ Y  +S   F Y      N N LL ++  N+DG+KTG+T  +GF++
Sbjct: 181 IAKLAQAIIRDLPEIYPLYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGFTSGAGFSL 240

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            TS    +  +++VVMG  +++ R+  + +L++
Sbjct: 241 TTSATNGNMRLISVVMGSNSAKGREADSKQLLS 273


>gi|260556621|ref|ZP_05828839.1| penicillin-binding protein 6B [Acinetobacter baumannii ATCC 19606]
 gi|260409880|gb|EEX03180.1| penicillin-binding protein 6B [Acinetobacter baumannii ATCC 19606]
          Length = 439

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 117/219 (53%), Gaps = 9/219 (4%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT--QNPSKLYLKEKTYFTTEQGI 132
           R PASLTKMM  YI  + +++ KL LN  I  +   +    + S++YLK     + +Q +
Sbjct: 56  RAPASLTKMMVAYIALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLL 115

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             LI  SAND +    E ISG    F   M+ +A+ +GM++T + N +G+   +  TTA 
Sbjct: 116 AGLIVMSANDAAVTLAEKISGDVPHFVKRMNQEAQALGMKDTHFSNPAGITMPDHYTTAH 175

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           D ++L   +    P+Y  Y  +  F Y  R     N  L    ++DG+KTGYT+ +G+N+
Sbjct: 176 DLSLLSQAVIHQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNL 235

Query: 253 -VTSLRYKDDP------IVAVVMGMPTSQERDQKALELI 284
            +T+ R    P      ++ +V+G P++ +R + A +L+
Sbjct: 236 ALTASRPSFSPNLPQRRLLVIVLGTPSAVKRAEIADKLM 274


>gi|239501103|ref|ZP_04660413.1| Penicillin-binding protein 6B precursor [Acinetobacter baumannii
           AB900]
          Length = 439

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 117/219 (53%), Gaps = 9/219 (4%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT--QNPSKLYLKEKTYFTTEQGI 132
           R PASLTKMM  YI  + +++ KL LN  I  +   +    + S++YLK     + +Q +
Sbjct: 56  RAPASLTKMMVAYIALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLL 115

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             LI  SAND +    E ISG    F   M+ +A+ +GM++T + N +G+   +  TTA 
Sbjct: 116 AGLIVMSANDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPAGITMPDHYTTAH 175

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           D ++L   +    P+Y  Y  +  F Y  R     N  L    ++DG+KTGYT+ +G+N+
Sbjct: 176 DLSLLSQAVIHQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNL 235

Query: 253 -VTSLRYKDDP------IVAVVMGMPTSQERDQKALELI 284
            +T+ R    P      ++ +V+G P++ +R + A +L+
Sbjct: 236 ALTASRPSFSPNLPQRRLLVIVLGTPSAVKRAEIADKLM 274


>gi|295100396|emb|CBK97941.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
           L2-6]
          Length = 418

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 124/233 (53%), Gaps = 3/233 (1%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++I+I+    ++   K  + R P AS+TK+MTL + FE +   +L + T +PVS+ A   
Sbjct: 70  AAILIEQGSGRVLYEKNADERVPIASITKVMTLLLAFEAVHDGRLTMETPVPVSEHAYHM 129

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+   +FT ++ I A+   SAND + A  E + GSE  F   M+ +A  +GM+ 
Sbjct: 130 GGSQIWLEPGEHFTLDEMIKAICVSSANDAAVAVAELVGGSEPAFVEQMNARAASLGMEQ 189

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--ITNHNKLL 231
           T ++NA GL  +  ++TARD A +   +    P+   Y  I     R     + N NKLL
Sbjct: 190 TSFRNACGLDAEGHLSTARDVAAMSRTILNTCPEVLHYTGIWTDTLRGGATQLINTNKLL 249

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +   I G+KTG T  +G  I  S       ++AV++G P+S +R   A  L+
Sbjct: 250 RRYEGITGLKTGTTGGAGICISASATRNGLSLIAVILGAPSSADRFNAATTLL 302


>gi|260549669|ref|ZP_05823886.1| penicillin-binding protein 6B [Acinetobacter sp. RUH2624]
 gi|260407186|gb|EEX00662.1| penicillin-binding protein 6B [Acinetobacter sp. RUH2624]
          Length = 439

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 117/219 (53%), Gaps = 9/219 (4%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT--QNPSKLYLKEKTYFTTEQGI 132
           R PASLTKMM  YI  + +++ KL LN  I  +   +    + S++YLK     + +Q +
Sbjct: 56  RAPASLTKMMVAYIALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLL 115

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             LI  SAND +    E ISG    F   M+ +A+ +GM++T + N +G+   +  TTA 
Sbjct: 116 AGLIVMSANDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPAGITMPDHYTTAH 175

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           D ++L   +    P+Y  Y  +  F Y  R     N  L    ++DG+KTGYT+ +G+N+
Sbjct: 176 DLSLLSQAVIHQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNL 235

Query: 253 -VTSLRYKDDP------IVAVVMGMPTSQERDQKALELI 284
            +T+ R    P      ++ +V+G P++ +R + A +L+
Sbjct: 236 ALTASRPSFSPNLPQRRLLVIVLGTPSAVKRAEIADKLM 274


>gi|255284455|ref|ZP_05349010.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
           DSM 14469]
 gi|255265000|gb|EET58205.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
           DSM 14469]
          Length = 508

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 110/215 (51%), Gaps = 17/215 (7%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           R PAS+TK+MT  +IFE L+   L L+ ++  S  A +   S+++L+E    T +  +  
Sbjct: 135 RSPASVTKIMTTLLIFEELEKGTLKLDDEVVTSAHAKSMGGSQVFLEEGEKQTVDTLLKC 194

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARD 193
           ++  S ND S A  E I G+E +F   M+ KA ++GM +T +++  GL D  N  TTA D
Sbjct: 195 ILVSSGNDASVAMAEHIGGTEAEFVSRMNEKAAELGMADTHFEDCCGLTDSDNHYTTAYD 254

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRI------------ITNHNKLLNKMHNIDGIK 241
            A++   L   FPQ Y Y +I    + + I            + N NKLL       G+K
Sbjct: 255 IALMSRELITRFPQVYDYTTI----WMDTITHVTRRGSSEFGLANTNKLLRSYDGCMGLK 310

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           TG T  + F +  +    D  +++VVM  P S+ R
Sbjct: 311 TGSTSKALFCVSATAVRNDIELISVVMAGPDSKTR 345


>gi|254500365|ref|ZP_05112516.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii
           DFL-11]
 gi|222436436|gb|EEE43115.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii
           DFL-11]
          Length = 320

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 117/225 (52%), Gaps = 1/225 (0%)

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT  I F+ L+   + L+T + +S  A  Q+ +   LK     T E  + A++  SAN+V
Sbjct: 1   MTALITFQALERGDVDLSTPVILSHNAMDQSAAYAGLKVGNAMTLEDALYAVLVGSANEV 60

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           + A  E ++G+E  F  LM+ +A ++G+  T + N +GL D+ Q  +ARD A+LG  L +
Sbjct: 61  AVALAETVAGTEAAFVDLMNAQADRLGLTATHFTNPNGLFDQKQTVSARDLAVLGRDLFQ 120

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
            +P Y + F        ++ + ++N+L+ +     G+KTG+  ++G NIV         +
Sbjct: 121 VYPDYRRMFRTAAVTIDDKELISYNELITRYPGTLGLKTGFVCSAGRNIVAIAERDGKRL 180

Query: 264 VAVVMGMPTSQERDQKALELI-TSFLEKKTLKHQQTHRKDNLSST 307
           +AVV+G  T +ER ++  +L   +F    T   Q      N S T
Sbjct: 181 LAVVLGATTGRERSERTAKLFDDAFAGNLTANGQALAELPNASET 225


>gi|148266151|ref|YP_001232857.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacter uraniireducens
           Rf4]
 gi|146399651|gb|ABQ28284.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacter uraniireducens
           Rf4]
          Length = 286

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 131/248 (52%), Gaps = 19/248 (7%)

Query: 33  KILFLSIIMISMASELHAK-----PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTL 86
           +I+ L+ +M++  +   A+     P+ +S  +   + +    ++   R P ASLTK+MT 
Sbjct: 4   RIMLLATLMLAAGNGGAAEVPDPFPRMASAYLVQIQGKTVWARRPVRRLPQASLTKIMTA 63

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            ++ E     +  L+  + VS+ AA +  S++ L+    F  E  + A++  SAND   A
Sbjct: 64  ILVLE-----RCKLDEVVTVSRRAAGETGSRIGLRVGERFRLEDLLAAMLVASANDACHA 118

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             + ++GSE++F  LM+ +A+ +G+ N+ + NA G    N  +TARD AIL     KN P
Sbjct: 119 LADHLAGSEERFVALMNARARGLGLDNSRFANACGHDAPNHYSTARDLAILAETALKN-P 177

Query: 207 QYYKYFSIRKF------RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
            + +  S ++       R R   + N NKLL +   + G+KTGYT N+G  +V +L  +D
Sbjct: 178 AFGRLVSSKRLKIRTVDRRRAFSLVNRNKLLGRSVGVSGVKTGYTENAGRCLV-ALAERD 236

Query: 261 DPIVAVVM 268
              V +V+
Sbjct: 237 GTRVLLVL 244


>gi|198284088|ref|YP_002220409.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|198248609|gb|ACH84202.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 317

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 102/201 (50%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MTLY++F+ + S  L LN      + A     S +++     FT  Q IL +  
Sbjct: 82  ASITKLMTLYLLFKDIDSGHLQLNQHFVPCRAALQTGGSSMFMHPGMPFTIAQLILGMTV 141

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND +      ++GS   F   M+  A+KIGM +T + +  GL   N + +  D A+L
Sbjct: 142 PSGNDAAVETAHLVAGSVPAFVAEMNRTARKIGMLSTTFYDPDGLPHPNNMASPYDVAVL 201

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              L   FPQ+  +F    F Y      N N L+ ++  I G+K+GYT  +G  +V +  
Sbjct: 202 TRTLMTQFPQFMPFFRHENFTYAGITSPNPNLLVGRVPFITGMKSGYTDAAGHCLVATGT 261

Query: 258 YKDDPIVAVVMGMPTSQERDQ 278
                ++AV++G+P+ ++  +
Sbjct: 262 QNGISLIAVILGVPSFRDEGR 282


>gi|218666016|ref|YP_002426742.1| D-alanyl-D-alanine carboxypeptidase, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218518229|gb|ACK78815.1| D-alanyl-D-alanine carboxypeptidase, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 323

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 102/201 (50%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MTLY++F+ + S  L LN      + A     S +++     FT  Q IL +  
Sbjct: 88  ASITKLMTLYLLFKDIDSGHLQLNQHFVPCRAALQTGGSSMFMHPGMPFTIAQLILGMTV 147

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND +      ++GS   F   M+  A+KIGM +T + +  GL   N + +  D A+L
Sbjct: 148 PSGNDAAVETAHLVAGSVPAFVAEMNRTARKIGMLSTTFYDPDGLPHPNNMASPYDVAVL 207

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              L   FPQ+  +F    F Y      N N L+ ++  I G+K+GYT  +G  +V +  
Sbjct: 208 TRTLMTQFPQFMPFFRHENFTYAGITSPNPNLLVGRVPFITGMKSGYTDAAGHCLVATGT 267

Query: 258 YKDDPIVAVVMGMPTSQERDQ 278
                ++AV++G+P+ ++  +
Sbjct: 268 QNGISLIAVILGVPSFRDEGR 288


>gi|253578836|ref|ZP_04856107.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849779|gb|EES77738.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 399

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 119/231 (51%), Gaps = 9/231 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D  R PAS+TK+MTL +IF+ L    L ++  +  S  A +   S+++L+E    T E  
Sbjct: 67  DTRRSPASITKIMTLILIFDALDKGSLKMDDTVTTSAHAKSMGGSQVFLEEGEIQTVETL 126

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-NQITT 190
           I  ++  S ND S A  E I GSE++F   M+ +A+ +GM+NT +++  GL +  +  TT
Sbjct: 127 IKCIVIASGNDASVAMAEHICGSEQEFVRHMNERAEGLGMKNTHFEDCCGLTESPDHYTT 186

Query: 191 ARDQAILGILLRKNFPQYYKYFSI--RKFRYRNR------IITNHNKLLNKMHNIDGIKT 242
           ARD AI+   L   +P+  +Y SI      +  R       +TN NKL+       G+KT
Sbjct: 187 ARDIAIMSRELITKYPKILEYSSIWMENITHVTRQGTKEFGLTNTNKLIRSYEGCVGLKT 246

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
           G T  + + +    +  D  ++AVVM  P  + R + A  ++     K +L
Sbjct: 247 GSTSIAKYCLSAVAKRNDITLIAVVMAAPDYKVRFKDAASMLNYGFSKCSL 297


>gi|169632783|ref|YP_001706519.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein
           [Acinetobacter baumannii SDF]
 gi|169151575|emb|CAP00352.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein
           [Acinetobacter baumannii]
          Length = 439

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 117/219 (53%), Gaps = 9/219 (4%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT--QNPSKLYLKEKTYFTTEQGI 132
           R PASLTKMM  YI  + +++ KL LN  I  +   +    + S++YLK     + +Q +
Sbjct: 56  RAPASLTKMMVAYIALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLL 115

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             LI  SAND +    E ISG    F   M+ +A+ +GM++T + N +G+   +  TTA 
Sbjct: 116 AGLIVMSANDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPAGITMPDHYTTAH 175

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           D ++L   +    P+Y  Y  +  F Y  R     N  L    ++DG+KTGYT+ +G+N+
Sbjct: 176 DLSLLSQAVIHQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTQAAGYNL 235

Query: 253 -VTSLRYKDDP------IVAVVMGMPTSQERDQKALELI 284
            +T+ R    P      ++ +V+G P++ +R + A +L+
Sbjct: 236 ALTASRPSFSPNLPQRRLLVIVLGTPSAVKRAEIADKLM 274


>gi|149181665|ref|ZP_01860158.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
           [Bacillus sp. SG-1]
 gi|148850643|gb|EDL64800.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
           [Bacillus sp. SG-1]
          Length = 387

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 116/206 (56%), Gaps = 6/206 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +I E L   ++    ++  S+ AA+   S+++L+     T ++ +L + 
Sbjct: 60  PASMTKIMTMILIMEALDKGQIKWEDEVRTSEYAASMGGSQIFLEPGEVMTVKEMLLGIS 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             SAND S A  E I+GSE+ F   M+NK K +G+++T +KN +GL      ++A D A+
Sbjct: 120 IGSANDASVAMAEHIAGSEEGFVEKMNNKVKDLGLKDTNFKNPTGLPASEHYSSAHDMAM 179

Query: 197 LGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +   L K + +  KY       +R+   +   + N NKL+     +DG+KTG+T  + + 
Sbjct: 180 MAKELLK-YQEITKYTGTYESYLREDTDKKFWLVNTNKLVRFYPGVDGLKTGFTNEAKYC 238

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERD 277
           +  + +  +  ++AVV G PT ++R+
Sbjct: 239 LTATAKKDNMRVIAVVFGEPTPKDRN 264


>gi|302386799|ref|YP_003822621.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           saccharolyticum WM1]
 gi|302197427|gb|ADL04998.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           saccharolyticum WM1]
          Length = 411

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 125/230 (54%), Gaps = 14/230 (6%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+++++ +  Q+   K  DE R PAS+TK+MTL +IF+ L S K+ L  ++  S  A + 
Sbjct: 57  SAVLMEASTGQIIYEKNADEKRSPASITKIMTLILIFDALDSGKIKLTDEVVTSAHAKSM 116

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+E    T +  I  ++  S ND S A  E+I+G+E +F  +M+ +A  +GM N
Sbjct: 117 GGSQVFLEEGEVQTVDTLIKCIVIASGNDASVAMAEYIAGTEDEFVKMMNERAAGLGMTN 176

Query: 174 TIYKNASGLHDKN-QITTARDQAILGILLRKNFPQYYKYFSIR--------KFRYRNRII 224
           T +++  GL +    +TTARD A++   L   +PQ + Y +I         K   +   +
Sbjct: 177 THFEDCCGLTESGTHVTTARDIALMSRELINKYPQIHNYSTIWMENITHVTKQGTKEFGL 236

Query: 225 TNHNKLLNKMH---NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           +N NKLL KM    N+ G+KTG T  + + +  +       ++A +M  P
Sbjct: 237 SNTNKLL-KMATNFNVTGLKTGSTSVAKYCLSATAEKDGVRLIASIMAAP 285


>gi|308174134|ref|YP_003920839.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens DSM
           7]
 gi|307606998|emb|CBI43369.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
           [Bacillus amyloliquefaciens DSM 7]
 gi|328552733|gb|AEB23225.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens
           TA208]
 gi|328912469|gb|AEB64065.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
           [Bacillus amyloliquefaciens LL3]
          Length = 389

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 153/296 (51%), Gaps = 21/296 (7%)

Query: 35  LFLSIIMISMASELHAKPKY-----------SSIVIDVNKNQMTGFKQDEPRY-PASLTK 82
           L + I++ + A    AKP             S+++I+ +   +   K    R  PAS+TK
Sbjct: 8   LLIGILLTASAPSAFAKPDGKHTSELAHEAKSAVLIERDTGSILYNKNSRERLAPASMTK 67

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT+ +I E L    + ++ ++  S+ AA+   S+++L+     T ++ +  +   S ND
Sbjct: 68  IMTMLLIMEALDKGNIKMSDKVRTSEHAASMGGSQIFLEPGEEMTVKEMLKGIAIASGND 127

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            S A  E+I+GSE+ F   M+ KAK++G+++T +KN +GL +K   ++A D A +   L 
Sbjct: 128 ASVAMAEYIAGSEEDFVSRMNKKAKELGLKDTSFKNPTGLPEKGHYSSAYDMAKMAKELL 187

Query: 203 K-----NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
           K      F   Y+ + +R+   +   + N N+L+     +DG+KTG+T  + + +  + +
Sbjct: 188 KYDKITQFTGTYEDY-LRENTDKKFWLVNTNRLIKFYPGVDGVKTGFTGEAKYCLTATAK 246

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELIT-SFLEKKTLKHQQTHRKDNLSSTSLKKS 312
             +  ++AVV G  T +ER+ +  +++  +F + KT  H    R   + S  +KK 
Sbjct: 247 KGNMRVIAVVFGASTPKERNAQVTKMLDYAFSQFKT--HPLYKRNQIVGSVKVKKG 300


>gi|291522275|emb|CBK80568.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus catus GD/7]
          Length = 430

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 117/225 (52%), Gaps = 11/225 (4%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
           QD    PAS+TK+MTL +I++ L + K+ L  ++  S  A +   S+++L+E    T E 
Sbjct: 90  QDVRVSPASITKIMTLLLIYDALYNGKIQLTDEVVTSARAKSMGGSQVFLEEGEKQTVET 149

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ-IT 189
            I  ++  S ND S A  E++SGSE+ F   M+ KA  +GM  T + +  GL D N   T
Sbjct: 150 LIKCIVIASGNDASVAMAEYVSGSEEAFVGEMNQKAADLGMNGTHFVDCCGLTDSNDHYT 209

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--------ITNHNKLLNKMHN--IDG 239
           TA+D AI+   L  N+P   +Y +I      +          ++N NKLL   +N  + G
Sbjct: 210 TAKDVAIMARALITNYPDISQYATIWMENITHVTAKGSSEFGLSNTNKLLKMANNFEVTG 269

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +KTG T  +G+    +       ++AVVM  P  + R  +A +L+
Sbjct: 270 LKTGSTAKAGYCFCGTAVKDGLSLIAVVMDAPDYKIRFSEAQQLL 314


>gi|298291753|ref|YP_003693692.1| serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506]
 gi|296928264|gb|ADH89073.1| Serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506]
          Length = 414

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 111/213 (52%), Gaps = 5/213 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYFTTEQG 131
           P S+ K+M+L +IF  +   +L  +T+  VS+ A     A    + ++    +       
Sbjct: 73  PGSIAKLMSLAVIFREITEGRLSPDTEFKVSEYAWRRGGAPSGGATMFAALNSSIKVSDL 132

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +   I  S ND +    E ISG+E  F++ M+ +AK++G+  + + N++GL D +Q TTA
Sbjct: 133 LRGAIIPSGNDATIILAEGISGNELGFSVKMNEEAKRLGLTGSSFHNSNGLSDPDQKTTA 192

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           RD A +   + +++P  YK FS   F +     +N N LL      DG  TGY +  GFN
Sbjct: 193 RDMAKIATHIIRDYPDLYKIFSEPDFLWSKIRQSNRNPLLGMSLGADGFMTGYLKEGGFN 252

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +V S    +  ++ V++G  + +ER + A +L+
Sbjct: 253 LVGSAVQNNQRLIVVILGGKSEKERAEDARKLL 285


>gi|148255490|ref|YP_001240075.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [Bradyrhizobium
           sp. BTAi1]
 gi|146407663|gb|ABQ36169.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [Bradyrhizobium
           sp. BTAi1]
          Length = 384

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 119/231 (51%), Gaps = 9/231 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYF 126
           DE R P+S+ K+MT  ++F  ++   + LN +  +S+ A     A    S ++    +  
Sbjct: 43  DELRAPSSMMKLMTAEVVFNAVKEGTIKLNDEYRISENAWRRGGAPSGGSTMFAALNSKV 102

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAI-LMSNKAKKIGMQNTIYKNASGLHDK 185
           +    +   I +S ND   A  E ++G+EK FA   M+ +A+++G+  + + N++GL D 
Sbjct: 103 SVSDLLHGAIIQSGNDACIALAEGMAGNEKIFAADYMTKRARELGLTKSTFANSNGLPDP 162

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
               T R+ A+L   +  +FP++YK F  ++F +      N N LLN M   DG+KTG+T
Sbjct: 163 GNKMTVRELAMLARHIILDFPEFYKIFGEKEFTWNKIRQQNRNPLLNAMEGADGLKTGFT 222

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA---LELITSFLEKKTL 293
           +  G+ +V S       ++ VV G+   ++R  +A   LE      E +TL
Sbjct: 223 KEGGYGMVGSAVQNGTRLIVVVNGLEDPEDRATEAKKMLEWGFRNFETRTL 273


>gi|229059652|ref|ZP_04197030.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH603]
 gi|228719665|gb|EEL71264.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH603]
          Length = 317

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 135/252 (53%), Gaps = 21/252 (8%)

Query: 46  SELHAKPKY--------SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSK 96
           SE    PKY        ++I+ID +  ++     ++E   PAS++KMMT Y++ E + + 
Sbjct: 50  SEKVVPPKYIPPEIDAKAAIIIDASNGEVIYQNNENEAVAPASMSKMMTAYLVLESIHNG 109

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           K+H    + +S+ +A    +K+ ++     T +    AL+  SAN+ + A  E ++ +EK
Sbjct: 110 KVHWEDPVKISEKSAQTEGAKIPMQANDTLTVKDLYHALMIESANNSAVALAEHVAKTEK 169

Query: 157 KFAILMSNKAKKIGMQNTI-YKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYF 212
            F  LM+ KAK++ M +   + NASGL + +      TA D + L   L K++P+  +  
Sbjct: 170 NFVQLMNEKAKQLEMSDKAKFANASGLQEPDGSETKMTAADVSKLAYHLIKDYPEILEVT 229

Query: 213 SIR--KFRYRNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
            +R  +  + N  +TN N++LNK      +  IDG+KTG+T ++G+    + +  D+ ++
Sbjct: 230 HLRQSQLAFNNINVTNTNEMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDNRVI 289

Query: 265 AVVMGMPTSQER 276
            VVMG  +  +R
Sbjct: 290 TVVMGTKSKTKR 301


>gi|325123015|gb|ADY82538.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 440

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 120/220 (54%), Gaps = 11/220 (5%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKL---HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           R PASLTKMM  YI  + +++ KL    + T  PV  +    + S++YLK     + +Q 
Sbjct: 57  RAPASLTKMMVAYIALKEIKAGKLKKEEIITATPVV-SVVQWDESQMYLKAGEQISVDQL 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  LI  SAND +    E ISG   +F   M+ +A+ +GM++T + N +G+   +  TTA
Sbjct: 116 LAGLIVMSANDAAVTLAEKISGDVPRFVQRMNQEAQALGMKDTHFSNPAGITMPDHFTTA 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            D ++L   L K  P+Y  Y  +  F Y  R     N  L    ++DG+KTGYT+ +G+N
Sbjct: 176 HDLSLLSQALIKQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYN 235

Query: 252 I-VTSLR--YKDD----PIVAVVMGMPTSQERDQKALELI 284
           + +T+ R  +  D     ++ +V+G P++ +R + A +L+
Sbjct: 236 LALTASRPSFSSDLTQRRLLVIVLGTPSAVKRAEIADKLM 275


>gi|304321771|ref|YP_003855414.1| D-alanyl-D-alanine carboxypeptidase [Parvularcula bermudensis
           HTCC2503]
 gi|303300673|gb|ADM10272.1| D-alanyl-D-alanine carboxypeptidase [Parvularcula bermudensis
           HTCC2503]
          Length = 387

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 134/274 (48%), Gaps = 16/274 (5%)

Query: 35  LFLSII-MISMASEL----HAKPKYSSIVIDVNKNQ-MTGFKQD--------EPRYPASL 80
           LFLSI+ ++ +AS +    H      S+  D      M G   D         P  PAS+
Sbjct: 4   LFLSILRLLCLASVVVGLTHGTVSAQSVTTDAPTALIMDGETGDVLFEKNARTPIPPASM 63

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           +K+MT+ +  + + + +L  +T   VS+ A     SK+++   T    ++ +  +IT S 
Sbjct: 64  SKLMTVAVALDMIATGELSADTPFSVSERAWRTGGSKMFVLVGTEIPLKELLKGIITVSG 123

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND +    E I+GS+  FA +M+ KA + G+  + + N  G+ D  Q  TA D A L   
Sbjct: 124 NDAAIVVAENIAGSDAAFADIMNRKAARWGLTGSHFANPHGIPDPEQRMTALDIAKLARH 183

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           +  ++P Y   FS+ +  + +    N N LL  +   DG+KTG+T  +GF +V S     
Sbjct: 184 IWDSYPDYRYLFSLPEMTWSDITQRNRNPLLG-LEGADGMKTGHTEEAGFGVVGSASRDG 242

Query: 261 DPIVAVVMGMPTSQERDQKALELI-TSFLEKKTL 293
                VV G+PTS+ R   A  L+ T+F +  T+
Sbjct: 243 VRRYIVVAGLPTSEARASTARRLLDTAFNDYSTV 276


>gi|295091220|emb|CBK77327.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cf.
           saccharolyticum K10]
          Length = 404

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 118/224 (52%), Gaps = 11/224 (4%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE R PAS+TK+MTL + F+ L+S K+ L  ++  S  A +   S+++L+E    T E  
Sbjct: 68  DEARNPASVTKIMTLLLTFDALKSGKIALTDEVVTSAHAKSMGGSQVFLEEGEVQTVETL 127

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITT 190
           I  ++  S ND S A  E+I+G E  F  +M+ +AK +GM+   +++  GL D  +   +
Sbjct: 128 IKCIVIASGNDASVAMAEYIAGDEASFVQMMNERAKGLGMEQANFEDCCGLTDSASHAMS 187

Query: 191 ARDQAILGILLRKNFPQYYKYFSIR--------KFRYRNRIITNHNKLLNKMHN--IDGI 240
           ARD A++   L   +P+ + Y +I         K   +   ++N NKLL    N  + G+
Sbjct: 188 ARDIALMTRELITKYPEIFNYSTIWMENITHVTKQGTKEFGLSNTNKLLKMATNFEVTGL 247

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           KTG T  + + +  + R     ++AV++  P  + R   A+ L+
Sbjct: 248 KTGSTSTAKYCLSATARKDGVELIAVILAAPDYKARFNDAVTLL 291


>gi|262172042|ref|ZP_06039720.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus MB-451]
 gi|261893118|gb|EEY39104.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus MB-451]
          Length = 317

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 111/202 (54%), Gaps = 4/202 (1%)

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVS 144
           +I + ++   + LN  + +SK A  +N    SK++++  T          +I +S ND  
Sbjct: 1   MIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFIEVGTTVKVSDLNRGIIIQSGNDAC 60

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  E ++GSE  F  LM+  A  +GM+++ + N+ GL D N  +T  D A+LG  L ++
Sbjct: 61  VAMAEHVAGSEDAFVDLMNAWASSLGMKDSHFTNSHGLDDPNLYSTPYDLALLGQALIRD 120

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
            P+ Y  +S +KF Y      N N LL +K  N+DGIKTG+T  +G+N+V+S    +  +
Sbjct: 121 VPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRL 180

Query: 264 VAVVMGMPTSQERDQKALELIT 285
           VAVVMG      R  ++ +L++
Sbjct: 181 VAVVMGTDNENARKAESKKLLS 202


>gi|192291489|ref|YP_001992094.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris TIE-1]
 gi|192285238|gb|ACF01619.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris TIE-1]
          Length = 413

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 122/237 (51%), Gaps = 8/237 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-- 110
           S+I++D     +  F++  DE R P+S+ K+MT+  +F  L++  L L  +  VS+ A  
Sbjct: 55  SAILVDAESGSVL-FEKNADELRAPSSMMKLMTVETVFHLLKTGDLQLTQEYRVSENAWR 113

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
              A    S ++ +  +  + +  +   I +S ND      E I+GSE  F   M+ +A+
Sbjct: 114 NGGAPAGGSTMFAEIHSIISVDNLLHGAIIQSGNDSCMVLAEGIAGSEAAFVEQMTKRAR 173

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
            IG+  + + N++GL + +   + R+ A L   +   +P+YY  F  ++F +     TN 
Sbjct: 174 AIGLTQSTFANSTGLPNPDNKMSVRELAKLARHIILTYPEYYPLFGEKEFTWNKIRQTNR 233

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N LLN M   DG KTGYT+  G+ +V S       ++ VV G+  + +R  +A +L+
Sbjct: 234 NPLLNAMPGADGFKTGYTKEGGYGMVGSAVQNGMRLIVVVNGLDDADDRASEAKKLL 290


>gi|262165190|ref|ZP_06032927.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM223]
 gi|262024906|gb|EEY43574.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM223]
          Length = 317

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 111/202 (54%), Gaps = 4/202 (1%)

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVS 144
           +I + ++   + LN  + +SK A  +N    SK++++  T          +I +S ND  
Sbjct: 1   MIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFIEVGTTVKVSDLNRGIIIQSGNDAC 60

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  E ++GSE  F  LM+  A  +GM+++ + N+ GL D N  +T  D A+LG  L ++
Sbjct: 61  VAMAEHVAGSEDAFVDLMNAWASSLGMKDSHFTNSHGLDDPNLYSTPYDLALLGQALIRD 120

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
            P+ Y  +S +KF Y      N N LL +K  N+DGIKTG+T  +G+N+V+S    +  +
Sbjct: 121 VPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRL 180

Query: 264 VAVVMGMPTSQERDQKALELIT 285
           VAVVMG      R  ++ +L++
Sbjct: 181 VAVVMGTDNENARKAESKKLLS 202


>gi|329929847|ref|ZP_08283523.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5]
 gi|328935825|gb|EGG32286.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5]
          Length = 396

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 124/231 (53%), Gaps = 7/231 (3%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I++D +   +   K    + P AS+TK+MT+ +  E +   +L L  ++  S+ AA+ 
Sbjct: 46  SAILLDADTGTIIYEKNSHDKLPPASITKVMTMLLTMEAIDEGQLKLTDKVRTSEYAASM 105

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+     T ++ +  +   S ND S A  E I+GSE+ F  +M+ KA ++GM++
Sbjct: 106 GGSQIFLEPGEEMTVDEMLKGIAMASGNDASVAMAEKIAGSEEGFVKMMNEKAAELGMKD 165

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHN 228
           T + N +GL  +N  T+A D A++   L K + Q  KY       +RK   +   + N N
Sbjct: 166 THFVNCNGLPAENHYTSAHDIAVMSRELLK-YDQITKYTGAYQDYLRKDSEKPFWLVNTN 224

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           KL+      DG+KTGYT  + F +  + +      VAVVMG P ++ R+ +
Sbjct: 225 KLVRFYTGADGLKTGYTSEAKFCLSATAKRDGLRAVAVVMGAPDTKTRNNE 275


>gi|315646365|ref|ZP_07899483.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus vortex
           V453]
 gi|315278008|gb|EFU41328.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus vortex
           V453]
          Length = 396

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 125/231 (54%), Gaps = 7/231 (3%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I++D +   +   K    + P AS+TK+MT+ +  E + + +L    ++  S+ AA+ 
Sbjct: 46  SAILLDADTGTIIYEKNSHDKLPPASITKIMTMLLTMEAIDAGRLQWTDKVRTSEYAASM 105

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+     T ++ +  +   S ND S A  E ++GSE+ F  +M++KA ++GM++
Sbjct: 106 GGSQIFLEPGEEMTVDEMLKGIAMASGNDASVAMAEKLAGSEQGFVKMMNDKAAELGMKD 165

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHN 228
           T + N +GL  +N  T+A D A++   L K + Q  KY       +RK   +   + N N
Sbjct: 166 THFVNCNGLPAENHYTSAHDIAVMSRELLK-YEQITKYTGSYQDYLRKDSQKPFWLVNTN 224

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           KL+      DG+KTGYT  + F +  + +      VAVVMG P ++ R+ +
Sbjct: 225 KLVRFYTGADGLKTGYTSEAKFCLSATAKRDGLRAVAVVMGAPDTKTRNNE 275


>gi|229166858|ref|ZP_04294605.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH621]
 gi|228616486|gb|EEK73564.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH621]
          Length = 317

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 134/252 (53%), Gaps = 21/252 (8%)

Query: 46  SELHAKPKY--------SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSK 96
           SE    PKY        ++I+ID +  ++     ++E   PAS++KMMT Y++ E + + 
Sbjct: 50  SEKVVPPKYIPPEIDAKAAIIIDASNGEVIYQNNENEAVAPASMSKMMTAYLVLESIHNG 109

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           K+H    + +S  +A    +K+ ++     T +    AL+  SAN+ + A  E ++ +EK
Sbjct: 110 KVHWEDPVKISAKSAQTEGAKIPMQANDTLTVKDLYHALMIESANNSAVALAEHVAKTEK 169

Query: 157 KFAILMSNKAKKIGMQNTI-YKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYF 212
            F  LM+ KAK++ M +   + NASGL + +      TA D A L   L K++P+  +  
Sbjct: 170 NFVQLMNEKAKQLEMSDKAKFANASGLQEPDGSETKMTAADVAKLAYHLIKDYPEILEVT 229

Query: 213 SIR--KFRYRNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
            +R  +  + N  +T+ N++LNK      +  IDG+KTG+T ++G+    + +  D+ I+
Sbjct: 230 HLRQSQLAFNNVNVTSTNEMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDNRII 289

Query: 265 AVVMGMPTSQER 276
            VVMG  +  +R
Sbjct: 290 TVVMGTKSKTKR 301


>gi|319935945|ref|ZP_08010369.1| D-alanyl-D-alanine carboxypeptidase [Coprobacillus sp. 29_1]
 gi|319809059|gb|EFW05555.1| D-alanyl-D-alanine carboxypeptidase [Coprobacillus sp. 29_1]
          Length = 381

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 135/265 (50%), Gaps = 14/265 (5%)

Query: 34  ILFLSIIMISM------ASELHAKPKY-SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMT 85
           ++ L ++++ M      A +L   P   SS++++ +  Q +    + +  +PAS TK+MT
Sbjct: 6   LICLFVMLLCMFPKVVYAEDLKLAPNAASSVLMEASTKQVLYSSHETDKLFPASTTKIMT 65

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           + ++FE +    L  +  +  S  AA+   S++YL+E    +       +   SAND   
Sbjct: 66  MILMFEAINKGTLKWDDVLTCSAYAASMGGSQIYLEEGEQMSVSDLFKGISIASANDACV 125

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL---- 201
             GE I+G+   F  +M+ KAK++ + NT + N +GLHD N  T A D  ++   L    
Sbjct: 126 MVGERIAGTNDGFVKMMNEKAKELNLTNTHFMNPTGLHDDNHYTCALDLGLMASYLIQIG 185

Query: 202 -RKNFPQYYKYFS-IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
             + F     Y S IR+   +   + N NKLL      DG+KTGYT+ +G+ IV++ +  
Sbjct: 186 GDRLFATTSLYDSYIRENSAQKFWLVNTNKLLKSYEGADGLKTGYTKEAGYCIVSTAKRN 245

Query: 260 DDPIVAVVMGMPTSQERDQKALELI 284
              ++AVVM     + R+Q+  +L+
Sbjct: 246 GLRLIAVVMKESEPKVRNQEVSQLL 270


>gi|170760218|ref|YP_001787185.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169407207|gb|ACA55618.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A3
           str. Loch Maree]
          Length = 407

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 124/224 (55%), Gaps = 7/224 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +  E + S K+ L  ++ +S+ A     S + L      T E  +  + 
Sbjct: 81  PASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAKKMGGSTMLLDVGEERTVEDLLKGIA 140

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A GE+++GSE+ F  +M+++A+K+ M++T +KN +GL  +   T+A D +I
Sbjct: 141 IASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNMKDTSFKNCTGLSAEGHKTSAYDISI 200

Query: 197 LG--ILLRKNFPQYYKYF--SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           +   +L  K   +Y   +  +I + R     + NHNKL+      DG+KTG+T  + + I
Sbjct: 201 MSRELLKHKQILKYTGTYMETISEGRKSPIGLVNHNKLVRFFKGCDGLKTGFTDEAKYCI 260

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTL 293
             + +     ++AV+MG PT + R++ A +L+    S  E KTL
Sbjct: 261 SATAKKDGVRMLAVIMGAPTYKIRNKDASKLMNYGFSKFECKTL 304


>gi|39935841|ref|NP_948117.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris CGA009]
 gi|39649695|emb|CAE28216.1| penicillin binding protein [Rhodopseudomonas palustris CGA009]
          Length = 413

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 122/237 (51%), Gaps = 8/237 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-- 110
           S+I++D     +  F++  DE R P+S+ K+MT+  +F  L++  L L  +  VS+ A  
Sbjct: 55  SAILVDAESGSVL-FEKNADELRAPSSMMKLMTVETVFHLLKTGDLQLTQEYRVSENAWR 113

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
              A    S ++ +  +  + +  +   I +S ND      E I+GSE  F   M+ +A+
Sbjct: 114 NGGAPAGGSTMFAEIHSIISVDNLLHGAIIQSGNDSCMVLAEGIAGSEAAFVEQMTKRAR 173

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
            IG+  + + N++GL + +   + R+ A L   +   +P+YY  F  ++F +     TN 
Sbjct: 174 AIGLTQSTFANSTGLPNPDNKMSVRELAKLARHIILTYPEYYPLFGEKEFTWNKIRQTNR 233

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N LLN M   DG KTGYT+  G+ +V S       ++ VV G+  + +R  +A +L+
Sbjct: 234 NPLLNAMPGADGFKTGYTKEGGYGMVGSAVQNGMRLIVVVNGLDDADDRASEAKKLL 290


>gi|300854313|ref|YP_003779297.1| D-alanyl-D-alanine carboxypeptidase [Clostridium ljungdahlii DSM
           13528]
 gi|300434428|gb|ADK14195.1| D-alanyl-D-alanine carboxypeptidase [Clostridium ljungdahlii DSM
           13528]
          Length = 435

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 116/213 (54%), Gaps = 6/213 (2%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           E   PAS+TK+MT+ +  E + S ++ L+ ++ VS+ A     S + L      + E  I
Sbjct: 105 EKLEPASVTKIMTMLLTMEAVDSGRISLSDKVTVSENAKKMGGSSMLLDTGEVRSVEDLI 164

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             +   S ND + A  E++ GSE +F  LM+ +A ++GM++T +KN +GL +   +TTA 
Sbjct: 165 KGIGIASGNDAAVAMAEYLGGSEDQFVQLMNKRAAELGMKDTSFKNCTGLSEDGHLTTAY 224

Query: 193 DQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRN 247
           D A++   L K+  +  KY      +I + R     + NHNKL+      DG+KTG+T +
Sbjct: 225 DIALMSRELLKH-TRILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTSS 283

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           + + I  +       ++AV+MG PT + R++ A
Sbjct: 284 AKYCISATATRDGARMLAVIMGSPTYKVRNKDA 316


>gi|187779539|ref|ZP_02996012.1| hypothetical protein CLOSPO_03135 [Clostridium sporogenes ATCC
           15579]
 gi|187773164|gb|EDU36966.1| hypothetical protein CLOSPO_03135 [Clostridium sporogenes ATCC
           15579]
          Length = 407

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 120/212 (56%), Gaps = 4/212 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +  E + S K+ L  ++ +S+ A     S + L      T E+ +  + 
Sbjct: 81  PASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAKKMGGSTMLLDVGEERTVEELLKGIA 140

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A GE+++GSE+ F  +M+++A+K+ M++T +KN +GL ++   T+A D +I
Sbjct: 141 IASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNMKDTSFKNCTGLSEEGHKTSAYDISI 200

Query: 197 LG--ILLRKNFPQYYKYF--SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           +   +L  K   +Y   +  +I + R     + NHNKL+      DG+KTG+T  + + I
Sbjct: 201 MSRELLKHKQILKYTGTYMETISEGRKSPIGLVNHNKLVRFFKGCDGLKTGFTDEAKYCI 260

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
             +       ++AV+MG PT + R++ A +L+
Sbjct: 261 SATATRDGVRMLAVIMGAPTYKIRNKDASKLM 292


>gi|170757721|ref|YP_001781407.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum B1 str.
           Okra]
 gi|169122933|gb|ACA46769.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum B1
           str. Okra]
          Length = 407

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 124/224 (55%), Gaps = 7/224 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +  E + S K+ L  ++ +S+ A     S + L      T E  +  + 
Sbjct: 81  PASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAKKMGGSTMLLDVGEERTVEDLLKGIA 140

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A GE+++GSE+ F  +M+++A+K+ M++T +KN +GL  +   T+A D +I
Sbjct: 141 IASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNMKDTSFKNCTGLSAEGHKTSAYDISI 200

Query: 197 LG--ILLRKNFPQYYKYF--SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           +   +L  K   +Y   +  +I + R     + NHNKL+      DG+KTG+T  + + I
Sbjct: 201 MSRELLKHKQILKYTGTYMETISEGRKSPIGLVNHNKLVRFFKGCDGLKTGFTDEAKYCI 260

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTL 293
             + +     ++AV+MG PT + R++ A +L+    S  E KTL
Sbjct: 261 SATAKKDGVRMLAVIMGAPTYKIRNKDASKLMNYGFSKFECKTL 304


>gi|229011286|ref|ZP_04168478.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides DSM
           2048]
 gi|228749942|gb|EEL99775.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides DSM
           2048]
          Length = 317

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 134/252 (53%), Gaps = 21/252 (8%)

Query: 46  SELHAKPKY--------SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSK 96
           SE    PKY        ++I+ID +  ++     ++E   PAS++KMMT Y++ E + + 
Sbjct: 50  SEKVVPPKYIPPEIDAKAAIIIDASNGEVIYQNNENEAVAPASMSKMMTAYLVLESIHNG 109

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           K+H    + +S  +A    +K+ ++     T +    AL+  SAN+ + A  E ++ +EK
Sbjct: 110 KVHWEDPVKISAKSAQTEGAKIPMQANDTLTVKDLYHALMIESANNSAVALAEHVAKTEK 169

Query: 157 KFAILMSNKAKKIGMQNTI-YKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYF 212
            F  LM+ KAK++ M +   + NASGL + +      TA D A L   L K++P+  +  
Sbjct: 170 NFVQLMNEKAKQLEMSDKAKFANASGLQEPDGSETKMTAADVAKLAYHLIKDYPEILEVT 229

Query: 213 SIR--KFRYRNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
            +R  +  + N  +T+ N++LNK      +  IDG+KTG+T ++G+    + +  D+ I+
Sbjct: 230 HLRQSQLAFNNVNVTSTNEMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDNRII 289

Query: 265 AVVMGMPTSQER 276
            VVMG  +  +R
Sbjct: 290 TVVMGTKSKTKR 301


>gi|148379819|ref|YP_001254360.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str.
           ATCC 3502]
 gi|153934177|ref|YP_001384117.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str.
           ATCC 19397]
 gi|153937458|ref|YP_001387657.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str.
           Hall]
 gi|148289303|emb|CAL83399.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str.
           ATCC 3502]
 gi|152930221|gb|ABS35721.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A
           str. ATCC 19397]
 gi|152933372|gb|ABS38871.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A
           str. Hall]
          Length = 407

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 124/224 (55%), Gaps = 7/224 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +  E + S K+ L  ++ +S+ A     S + L      T E  +  + 
Sbjct: 81  PASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAKKMGGSTMLLDVGEERTVEDLLKGIA 140

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A GE+++GSE+ F  +M+++A+K+ M++T +KN +GL  +   T+A D +I
Sbjct: 141 IASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNMKDTSFKNCTGLSAEGHKTSAYDISI 200

Query: 197 LG--ILLRKNFPQYYKYF--SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           +   +L  K   +Y   +  +I + R     + NHNKL+      DG+KTG+T  + + I
Sbjct: 201 MSRELLKHKQILKYTGTYMETISEGRKSPIGLVNHNKLVRFFKGCDGLKTGFTDEAKYCI 260

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTL 293
             + +     ++AV+MG PT + R++ A +L+    S  E KTL
Sbjct: 261 SATAKKDGVRMLAVIMGAPTYKIRNKDASKLMNYGFSKFECKTL 304


>gi|295116100|emb|CBL36947.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
           SM4/1]
          Length = 404

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 119/229 (51%), Gaps = 21/229 (9%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE R PAS+TK+MTL + F+ L+S K+ L  ++  S  A +   S+++L+E    T E  
Sbjct: 68  DEARNPASVTKIMTLLLTFDALKSGKIALTDEVVTSAHAKSMGGSQVFLEEGEVQTVETL 127

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-NQITT 190
           I  ++  S ND S A  E+I+G E  F  +M+ +AK +GM+   +++  GL D  +   +
Sbjct: 128 IKCIVIASGNDASVAMAEYIAGDEASFVQMMNERAKGLGMEQANFEDCCGLTDSASHAMS 187

Query: 191 ARDQAILGILLRKNFPQYYKYFSI-------------RKFRYRNRIITNHNKLLNKMHN- 236
           ARD A++   L   +P+ + Y +I             +KF      ++N NKLL    N 
Sbjct: 188 ARDIALMTRELITKYPEIFNYSTIWMENITHVTKQGTKKFG-----LSNTNKLLKMATNF 242

Query: 237 -IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            + G+KTG T  + + +  + R     ++AV++  P  + R   A+ L+
Sbjct: 243 EVTGLKTGSTSTAKYCLSATARKDGVELIAVILAAPDYKARFNDAVTLL 291


>gi|254455195|ref|ZP_05068630.1| D-alanyl-D-alanine carboxypeptidase [Octadecabacter antarcticus
           238]
 gi|198263605|gb|EDY87877.1| D-alanyl-D-alanine carboxypeptidase [Octadecabacter antarcticus
           238]
          Length = 399

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 115/223 (51%), Gaps = 10/223 (4%)

Query: 72  DEPRYPASLTKMMTLYIIFEYL-----QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYF 126
           D+P  PAS+ K+MTLY+ FE +     Q   L ++  +PVS+       S ++L      
Sbjct: 51  DDPLPPASMLKLMTLYMAFEAINPLNGQDPFLTVDDVLPVSQHCMDYTGSTMFLDTTDRV 110

Query: 127 TTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
             +  +  +I  S ND S    E +S  G+E  FA  M+ +A+++GM N+ + N++G   
Sbjct: 111 RVDDLLRGIIVLSGNDASCVIAEGLSRNGTEAGFAQQMTVRAQQLGMLNSSFANSNGWPA 170

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN---HNKLLNKMHNIDGIK 241
             Q  + RD  +L   L  ++P +Y  F+ ++F Y      N    N LL+     DG+K
Sbjct: 171 AGQRMSMRDLGLLANRLITDYPTFYPLFAEQEFDYDGEHPANTRNRNPLLSLGIGADGLK 230

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           TG+T  +G+ +V S +  D  I+ VV G  T QER ++A  ++
Sbjct: 231 TGHTIEAGYGLVGSAKQGDRRIIFVVTGHETVQERAEEAERIV 273


>gi|226311980|ref|YP_002771874.1| D-alanyl-D-alanine carboxypeptidase precursor [Brevibacillus brevis
           NBRC 100599]
 gi|226094928|dbj|BAH43370.1| putative D-alanyl-D-alanine carboxypeptidase precursor
           [Brevibacillus brevis NBRC 100599]
          Length = 394

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 133/241 (55%), Gaps = 8/241 (3%)

Query: 46  SELHAKPKYSS-IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           S+ H  P+ SS ++I+ +   +   K  +E   PAS+TK+MT+ +I E ++  +L L  +
Sbjct: 33  SDNHFAPQASSAVMIEADTGTVLYEKNANEKMPPASITKVMTMLLIMEAVERGELKLTDK 92

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           +  S+ AA+   S+++L+     T E  +  +   S ND S A  E ++G+E+ F   M+
Sbjct: 93  VRTSERAASMGGSQIFLQPGEEMTVEDMLKGIAIASGNDASVAMAEHLAGTEESFVTRMN 152

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN-----FPQYYKYFSIRKFR 218
            +A+++GM+NT + N++GL   N  ++A D AI+   L K+     F   Y+ + +RK  
Sbjct: 153 ERAQQLGMKNTHFVNSNGLPAANHYSSAGDIAIMSRELLKHEGITKFTGTYQDY-LRKDT 211

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                + N NKL+     +DG+KTGYT  + + +  + +  +  ++AVV+G P  + R+ 
Sbjct: 212 ESPFWLVNTNKLVRFYEGVDGLKTGYTGEAKYCLTATAKRNNMRVIAVVLGEPDVKTRNN 271

Query: 279 K 279
           +
Sbjct: 272 E 272


>gi|146340768|ref|YP_001205816.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [Bradyrhizobium
           sp. ORS278]
 gi|146193574|emb|CAL77591.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [Bradyrhizobium
           sp. ORS278]
          Length = 384

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 118/231 (51%), Gaps = 9/231 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYF 126
           DE R P+S+ K+MT  ++F  ++   + LN +  +S+ A     A    S ++    +  
Sbjct: 43  DELRAPSSMMKLMTAEVVFNAVKEGTVKLNDEYRISENAWRKGGAPSGTSTMFAALNSKV 102

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAI-LMSNKAKKIGMQNTIYKNASGLHDK 185
                +   I +S ND   A  E ++G+EK FA   M+ +A+++G+  + + N++GL D 
Sbjct: 103 PVSDLLHGAIIQSGNDACIALAEGMAGNEKIFAADYMTKRARELGLSKSTFANSNGLPDP 162

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
               T R+ ++L   +  +FP++YK F  ++F +      N N LLN M   DG+KTGYT
Sbjct: 163 GNKMTVRELSMLARHIILDFPEFYKIFGEKEFTWNKIRQQNRNPLLNAMEGADGLKTGYT 222

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA---LELITSFLEKKTL 293
           +  G+ +V S       ++ VV G+   ++R  +A   LE      E +TL
Sbjct: 223 KEGGYGMVGSAVQNGTRLIVVVNGLEDPEDRATEAKKMLEWGFRNFETRTL 273


>gi|283795540|ref|ZP_06344693.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
 gi|291077207|gb|EFE14571.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
          Length = 404

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 119/229 (51%), Gaps = 21/229 (9%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE R PAS+TK+MTL + F+ L+S K+ L  ++  S  A +   S+++L+E    T E  
Sbjct: 68  DEARNPASVTKIMTLLLTFDALKSGKIALTDEVVTSAHAKSMGGSQVFLEEGEVQTVETL 127

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITT 190
           I  ++  S ND S A  E+I+G E  F  +M+ +AK +GM+   +++  GL D  +   +
Sbjct: 128 IKCIVIASGNDASVAMAEYIAGDEASFVQMMNERAKGLGMEQANFEDCCGLTDSASHAMS 187

Query: 191 ARDQAILGILLRKNFPQYYKYFSI-------------RKFRYRNRIITNHNKLLNKMHN- 236
           ARD A++   L   +P+ + Y +I             +KF      ++N NKLL    N 
Sbjct: 188 ARDIALMTRELITKYPEIFNYSTIWMENITHVTKQGTKKFG-----LSNTNKLLKMATNF 242

Query: 237 -IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            + G+KTG T  + + +  + R     ++AV++  P  + R   A+ L+
Sbjct: 243 EVTGLKTGSTSTAKYCLSATARKDGVELIAVILAAPDYKARFNDAVTLL 291


>gi|146312224|ref|YP_001177298.1| D-alanyl-D-alanine carboxypeptidase [Enterobacter sp. 638]
 gi|145319100|gb|ABP61247.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Enterobacter sp. 638]
          Length = 394

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 133/267 (49%), Gaps = 19/267 (7%)

Query: 37  LSIIMISMASELHAKP-----------KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMM 84
           LS++  S+   L A P             S +++D    Q +T   + + R PASLTK+M
Sbjct: 15  LSLLASSVTPALAADPLDFSPQPPAIQAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLM 74

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITR 138
           T Y++   + S ++  +  + V + A A  NP     S ++LK     +       LI  
Sbjct: 75  TGYVVDRAIDSHRITPDDMVTVGRDAWAKGNPVFDGSSLMFLKAGERVSVRDLSRGLIVD 134

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND   A  ++++G + +F  +M+   +K+G+++T ++   GL    Q ++A D A+L 
Sbjct: 135 SGNDACVALADYVAGGQPQFVNMMNEYVQKLGLRDTHFETVHGLDAPGQHSSAYDLAVLS 194

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLR 257
             +    P +Y  +S +   +      N N LL +K   +DG+KTG+T  +GFN++ S  
Sbjct: 195 RAIIHGEPDFYHMYSEKSLTWNGVTQQNRNGLLWDKNLKVDGLKTGHTSGAGFNLIASAV 254

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELI 284
                ++AV+MG  + + R+ +A +L+
Sbjct: 255 DGQRRLIAVIMGGESPKGREDQARKLL 281


>gi|225374869|ref|ZP_03752090.1| hypothetical protein ROSEINA2194_00492 [Roseburia inulinivorans DSM
           16841]
 gi|225213252|gb|EEG95606.1| hypothetical protein ROSEINA2194_00492 [Roseburia inulinivorans DSM
           16841]
          Length = 421

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 126/250 (50%), Gaps = 20/250 (8%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MTL +IF+ ++S ++ L   + VS+ AA+   S+++L+     T +  I  + 
Sbjct: 93  PASITKIMTLILIFDAIESGQISLEDTVTVSEYAASMGGSQVFLEPNETQTVDTMIKCIS 152

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             SAND   A  EFI GSE  F   M+ +AK +GM +T + N  GL     +T+A D A+
Sbjct: 153 IASANDACVAMAEFICGSEAAFVEKMNERAKGLGMNDTTFVNCCGLDVDGHMTSAYDVAL 212

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRI------------ITNHNKLLNKMHNIDGIKTGY 244
           +   L   +PQ + Y +I    + + I            +TN NKL+ +     G+KTG 
Sbjct: 213 MSRELTTKYPQIHDYSTI----WMDTITHVTRRGSEEFGLTNTNKLIRQYQYATGLKTGS 268

Query: 245 TRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
           T  + +  V++   KD   ++AVVM  P  + R   A  L+     K  +   +    D 
Sbjct: 269 TSLAKY-CVSATAVKDGMELIAVVMAAPDFKIRFADAATLLNYGFSKCRIYSDE--NTDT 325

Query: 304 LSSTSLKKSL 313
           L++  LKK +
Sbjct: 326 LAALPLKKGI 335


>gi|68171447|ref|ZP_00544835.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|88657866|ref|YP_507852.1| D-alanyl-D-alanine carboxypeptidase family protein [Ehrlichia
           chaffeensis str. Arkansas]
 gi|67999128|gb|EAM85790.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|88599323|gb|ABD44792.1| D-alanyl-D-alanine carboxypeptidase family protein [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 381

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 110/205 (53%), Gaps = 1/205 (0%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   P+S+T +MTLY+ F Y+++  + +  +   SK A  +  + ++L+          
Sbjct: 52  DEQIAPSSMTNLMTLYVTFYYIKAGFVKMEDKFKTSKEAWQKGGNSIFLRAGQLVAVRDL 111

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           I  +IT SAND      E ++GS++ F   M+  A+K+ +  + + N  G  DKNQ  + 
Sbjct: 112 INGIITTSANDACITLAEGVAGSQENFVDEMNRIAQKLNLTKSHFSNVIGAQDKNQFMSI 171

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           RD   L + + ++FP+YY  FS + F+Y N    N N LL+  + IDGI + YT   G+ 
Sbjct: 172 RDLITLTVRIFEDFPEYYHLFSKKDFKYNNIYQENIN-LLSPDNRIDGIISIYTDAGGYG 230

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQER 276
            + + +++   I  ++ G+ T +ER
Sbjct: 231 SIVAAKHEGRRIFILISGLKTEKER 255


>gi|284007887|emb|CBA73817.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase)
           [Arsenophonus nasoniae]
          Length = 402

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 117/218 (53%), Gaps = 7/218 (3%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLY 119
           +T    DE   PASLTK+MT Y++ + +++ K+ +N  + V + A AT NP     S ++
Sbjct: 55  LTANNPDERLDPASLTKIMTSYVVGQAIKAGKISVNDLVTVGEDAWATGNPVLHGSSLMF 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           LK     +       ++ +S ND   A  ++++GS+  F  LM+     +G++NT +K  
Sbjct: 115 LKPGDRVSVLDLNRGIVIQSGNDACIALADYVAGSQTVFVDLMNQYVTSLGLKNTHFKTV 174

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNID 238
            GL  + Q +TA D AIL   L ++ P  Y     + F Y      N N+LL +K   +D
Sbjct: 175 HGLDSEGQFSTAHDMAILTQALIRDVPDEYLLHGEKVFTYNKIKQFNRNRLLWSKNLQVD 234

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           G+KTG+T  +G+N++TS       ++AVV+G  + + R
Sbjct: 235 GVKTGHTSGAGYNLITSATNGPMRLIAVVLGAGSDRIR 272


>gi|163939795|ref|YP_001644679.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
 gi|229132823|ref|ZP_04261668.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           BDRD-ST196]
 gi|163861992|gb|ABY43051.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
 gi|228650650|gb|EEL06640.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           BDRD-ST196]
          Length = 317

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 134/252 (53%), Gaps = 21/252 (8%)

Query: 46  SELHAKPKY--------SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSK 96
           SE    PKY        ++I+ID +  ++     ++E   PAS++KMMT Y++ E + + 
Sbjct: 50  SEKVVPPKYIPPEIDAKAAIIIDASNGEVIYQNNENEAVAPASMSKMMTAYLVLESIHNG 109

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           K+H    + +S  +A    +K+ ++     T +    AL+  SAN+ + A  E ++ +EK
Sbjct: 110 KVHWEDPVKISAKSAQTEGAKIPMQANDTLTVKDLYHALMIESANNSAVALAEHVAKTEK 169

Query: 157 KFAILMSNKAKKIGMQNTI-YKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYF 212
            F  LM+ KAK++ M +   + NASGL + +      TA D + L   L K++P+  +  
Sbjct: 170 NFVQLMNEKAKQLEMSDKAKFANASGLQEPDGSETKMTAADVSKLAYHLIKDYPEILEVT 229

Query: 213 SIR--KFRYRNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
            +R  +  + N  +TN N++LNK      +  IDG+KTG+T ++G+    + +  D+ ++
Sbjct: 230 HLRQSQLAFNNINVTNTNEMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDNRVI 289

Query: 265 AVVMGMPTSQER 276
            VVMG  +  +R
Sbjct: 290 TVVMGTKSKTKR 301


>gi|154248244|ref|YP_001419202.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter
           autotrophicus Py2]
 gi|154162329|gb|ABS69545.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter
           autotrophicus Py2]
          Length = 399

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 125/240 (52%), Gaps = 14/240 (5%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR--YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----- 107
           S+I++D     +  F++D  R   P +L K+MT  ++F  L++ K+ L+T   VS     
Sbjct: 35  SAILVDYETGTIL-FEKDADRRIAPGTLAKVMTADVVFSQLKAGKIALDTPFTVSVNAWR 93

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
           +       + ++ +        + +  ++  S ND + A  E + G+E +F+  M+ +AK
Sbjct: 94  RGGGPSGGAAMFAEVNKPAPVGELLAGMLVVSGNDAAIALAEGVGGTETEFSQQMTERAK 153

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF---SIRKFRYRNRII 224
            IGM N+ ++NA+G  D  Q +TARD ++L   + + +P YY  F   SI   R + R  
Sbjct: 154 AIGMANSEFRNATGFADPGQFSTARDLSVLAQHVIRTYPDYYPVFARTSIEWSRIKQR-- 211

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            N N LL+     DG++ G+ ++ G++ + S       ++ VV+   T +ER ++A +L+
Sbjct: 212 -NRNVLLDAGIGADGLQIGWVKDVGYHALGSAVQNGQRLIVVVLAAKTEKERLEEAKKLL 270


>gi|255021081|ref|ZP_05293134.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC
           51756]
 gi|254969495|gb|EET27004.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC
           51756]
          Length = 299

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 107/221 (48%), Gaps = 1/221 (0%)

Query: 57  IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           I+++    Q+   K    P   AS+TK+MTLY++F+ LQS  L L  Q      A     
Sbjct: 42  ILMNAETGQILATKHAYRPYAIASITKLMTLYLLFQDLQSGHLSLQQQFKPCPAALHTGG 101

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S + L+    FT  Q IL +   S ND +      +SGS   F   M+  A+++GM +T 
Sbjct: 102 STMDLRAGVPFTVAQMILGMTVPSGNDAAVEAAHLVSGSVPAFVRKMNRTARQLGMLSTQ 161

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           + +  GL   N   +  D A+L   +   FPQY  +F    F Y      N N L+ ++ 
Sbjct: 162 FYDPDGLPHPNNTASPYDIALLTRAIMTQFPQYMPFFQHEHFTYGGITYPNPNLLVGRVP 221

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
            I G+K+GYT  +G  +V +       ++AVV+G+P+  + 
Sbjct: 222 FITGMKSGYTDAAGHCLVATGTQDGVKLIAVVLGVPSFHDE 262


>gi|197303542|ref|ZP_03168581.1| hypothetical protein RUMLAC_02264 [Ruminococcus lactaris ATCC
           29176]
 gi|197297540|gb|EDY32101.1| hypothetical protein RUMLAC_02264 [Ruminococcus lactaris ATCC
           29176]
          Length = 402

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 119/221 (53%), Gaps = 8/221 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D  R PAS+TK+MT+ +IF+ L   K+ L  ++  S+ A++   S+++L+     T E  
Sbjct: 69  DTARPPASVTKVMTMLLIFDALAEGKIQLEDEVTTSEYASSMGGSQVFLETGEKQTVETL 128

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +   SAND   A  E+ISG+E++F   M+ +A+ +GM++T + N +GL  +   T+A
Sbjct: 129 LKCISVASANDACVAMAEYISGNEEEFVRQMNLRAEGLGMKHTHFVNCNGLDAEGHETSA 188

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--------ITNHNKLLNKMHNIDGIKTG 243
           RD A++   L   +P+ + Y +I      +          +TN NKL+ +     G+KTG
Sbjct: 189 RDIALMSRELLLKYPEIHNYCTIWMENITHTTSKGSSEFGLTNTNKLIRQYEYATGLKTG 248

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            T  + F +  +       ++AV+MG   S+ R + A+ L+
Sbjct: 249 STGKAKFCVSATAEKNGVSLIAVIMGAEDSKARFKDAVTLL 289


>gi|160880719|ref|YP_001559687.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           phytofermentans ISDg]
 gi|160429385|gb|ABX42948.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           phytofermentans ISDg]
          Length = 450

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 116/216 (53%), Gaps = 8/216 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MTL +IF+ L S ++ +  Q+ VS+ AA+   S+++L+       +  +  + 
Sbjct: 122 PASITKIMTLLLIFDALDSGQIKMTDQVSVSEHAASMGGSQVFLEPFETQDVDTMLKCIS 181

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             SAND S A  EFI+GSE+ F   M+ KAK++GM +T + N  GL   N  T A D A+
Sbjct: 182 IASANDASVAMAEFIAGSEEAFVSKMNQKAKELGMDHTNFVNCYGLDTDNHYTCALDVAL 241

Query: 197 LGILLRKNFPQYYKYFSIR--KFRYRNR------IITNHNKLLNKMHNIDGIKTGYTRNS 248
           +   L    P+   Y ++   KF +  +       + N NKL+     I G+KTG T  +
Sbjct: 242 MSRELIMKHPEISNYSTVWMDKFVHTTKRGQTEFGLNNTNKLIKSYQGITGLKTGSTGLA 301

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            + +  + R     ++AVVM  P ++ R  +A +L+
Sbjct: 302 KYCLSATARRDGMDLIAVVMAAPDTKTRFAEAAKLL 337


>gi|90418359|ref|ZP_01226271.1| putative penicillin-binding protein, D-Ala-D-Ala carboxypeptidase
           family [Aurantimonas manganoxydans SI85-9A1]
 gi|90338031|gb|EAS51682.1| putative penicillin-binding protein, D-Ala-D-Ala carboxypeptidase
           family [Aurantimonas manganoxydans SI85-9A1]
          Length = 393

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 111/213 (52%), Gaps = 7/213 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYFTTEQG 131
           PASL K+MT+ ++F+ L+  ++  + +  VS+ A     A+   S ++L   +    E  
Sbjct: 63  PASLAKLMTIAVLFDDLKQGRVQRDDRFVVSEHAWRTGGASSGGSTMFLPLNSEVAVEDL 122

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           I  +I +S ND +    E +SGS + FA  M+ +A+KIG+ ++ + N  GL D  Q  + 
Sbjct: 123 IRGIIVQSGNDATIVVAEGLSGSVEAFAGRMNAEAEKIGLTHSHFTNPHGLPDPEQHVSV 182

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           RD A L   L + FP+ Y  F+   F Y      N N LL+     DG+KTG+T  +G+ 
Sbjct: 183 RDLARLATYLIREFPEDYPIFAEESFTYNGIKQQNRNPLLDL--GADGLKTGHTSAAGYG 240

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +V S       IV  + GM ++ ER  +A  L+
Sbjct: 241 LVASAERDGRRIVLAMSGMGSTAERASEARRLM 273


>gi|153940158|ref|YP_001391119.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum F str.
           Langeland]
 gi|152936054|gb|ABS41552.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum F
           str. Langeland]
          Length = 407

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 124/224 (55%), Gaps = 7/224 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +  E + S K+ L  ++ +S+ A     S + L      T E  +  + 
Sbjct: 81  PASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAKKMGGSTMLLDVGEERTVEDLLKGIA 140

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A GE+++GSE+ F  +M+++A+K+ M++T +KN +GL  +   T+A D +I
Sbjct: 141 IASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNMKDTSFKNCTGLSVEGHKTSAYDISI 200

Query: 197 LG--ILLRKNFPQYYKYF--SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           +   +L  K   +Y   +  +I + R     + NHNKL+      DG+KTG+T  + + I
Sbjct: 201 MSRELLKHKQILKYTGTYMETISEGRKSPIGLVNHNKLVRFFKGCDGLKTGFTDEAKYCI 260

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTL 293
             + +     ++AV+MG PT + R++ A +L+    S  E KTL
Sbjct: 261 SATAKKDGVRMLAVIMGAPTYKIRNKDASKLMNYGFSKFECKTL 304


>gi|115524870|ref|YP_781781.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisA53]
 gi|115518817|gb|ABJ06801.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisA53]
          Length = 418

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 116/236 (49%), Gaps = 9/236 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-----KTAATQNPSKLYLKEKTYF 126
           DE R P+S+ K+MT+  +F  LQ   + L  +  VS     K  A    S ++ +  +  
Sbjct: 78  DELRAPSSMMKLMTVEYVFHALQQGDIKLTDEFKVSENSWRKGGAPAGGSTMFAEIHSRV 137

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           + E  +   I +S ND      E ++G E  FA  ++ +A+++G+  + + N++GL D  
Sbjct: 138 SVENLLRGAIIQSGNDSCMVLAEGLAGGESAFAEKLTQRARELGLPRSTFANSNGLPDPG 197

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
              + R+   L   L   +P YYK F  R+F +      N N LL  +   DG+KTG+T+
Sbjct: 198 NKMSVRELGKLARHLILTYPDYYKIFGEREFTWNKIRQQNRNPLLTMLEGADGLKTGFTK 257

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA---LELITSFLEKKTL-KHQQT 298
           + G+ +V S       ++ VV G+  + +R Q+A   LE      E +TL K Q T
Sbjct: 258 DGGYGMVGSAEQNGMRLIVVVNGLEDADDRAQEAKKILEWGFRNFETRTLFKPQDT 313


>gi|266624787|ref|ZP_06117722.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
 gi|288863335|gb|EFC95633.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
          Length = 410

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 126/234 (53%), Gaps = 12/234 (5%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+++++ +  Q+   K  D  R PAS+TK+MTL +IF+ L S K+ +  ++  S  A + 
Sbjct: 56  SALLMEASTGQVIYEKDADTKRSPASITKIMTLILIFDALDSGKIKMTDEVVTSAHAKSM 115

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+E    T E  I  ++  S ND S A  E+I+G+E++F  +M+ +A  +GM N
Sbjct: 116 GGSQVFLEEGETQTVETMIKCIVVASGNDASVAMAEYIAGTEEEFVKMMNERAAGLGMTN 175

Query: 174 TIYKNASGLHDK-NQITTARDQAILGILLRKNFPQYYKYFSIR--------KFRYRNRII 224
           T +++  GL +  + +TTARD A++   L   +PQ + Y +I         K   +   +
Sbjct: 176 THFEDCCGLTESPDHVTTARDIALMSRELINKYPQIHNYSTIWMENITHVTKQGTKEFGL 235

Query: 225 TNHNKLLNKMHN--IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           +N NKLL    N  + G+KTG T  + + +  +       ++A +M  P  + R
Sbjct: 236 SNTNKLLKMATNFQVTGLKTGSTSLAKYCLSATAEKDGVRLIASIMAAPDYKAR 289


>gi|218678836|ref|ZP_03526733.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli CIAT 894]
          Length = 168

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 56/136 (41%), Positives = 84/136 (61%), Gaps = 1/136 (0%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +S VID    Q +    QDE  YPASLTKMMTLY+ FE L   +L  + ++ +S+ A ++
Sbjct: 30  ASFVIDAQSGQILEASNQDELNYPASLTKMMTLYLAFEALHEGRLKWDQKLTMSENAESK 89

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
            P KL +      T  + + +++  SAND + A  E + GSE+ FA  M++KA+++GM N
Sbjct: 90  EPFKLAIGAGRQVTLREAVESIVVLSANDSAVAIAEQLGGSEQAFAKTMTDKARQLGMTN 149

Query: 174 TIYKNASGLHDKNQIT 189
           T++KN SGL D  Q+T
Sbjct: 150 TVFKNPSGLPDPEQVT 165


>gi|294501138|ref|YP_003564838.1| D-alanine-D-alanine carboxypetidase [Bacillus megaterium QM B1551]
 gi|294351075|gb|ADE71404.1| D-alanine-D-alanine carboxypetidase [Bacillus megaterium QM B1551]
          Length = 388

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 121/213 (56%), Gaps = 6/213 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +I E L   K+ L  ++  S+ AA+   S+++L+     T    +  + 
Sbjct: 61  PASMTKIMTMILIMEALDKGKITLKDKVRASEYAASMGGSQIFLEPGEEMTVNDLLKGIA 120

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND S A  E+++GSE+KF   M+ KAK++G+ +T ++N +GL  +N  +TA D A+
Sbjct: 121 IGSGNDASMAMAEYLAGSEEKFVAKMNQKAKELGLTHTQFQNPTGLPVENHYSTAHDMAM 180

Query: 197 LGILLRK-----NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +G  L K     N+   Y+ + +R    +   + N N+L+     +DG+KTG+T  + + 
Sbjct: 181 MGRELLKYEKIINYTSKYEAY-LRTDTDKKFWLVNTNRLVKFYPGVDGLKTGFTGQAKYC 239

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +  + +  +  ++AVV G  T ++R+ +  +++
Sbjct: 240 LTATAKKGNMRVLAVVFGASTPKDRNNQVTKML 272


>gi|294649783|ref|ZP_06727186.1| D-ala-D-ala-carboxypeptidase [Acinetobacter haemolyticus ATCC
           19194]
 gi|292824334|gb|EFF83134.1| D-ala-D-ala-carboxypeptidase [Acinetobacter haemolyticus ATCC
           19194]
          Length = 438

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 116/219 (52%), Gaps = 9/219 (4%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT--QNPSKLYLKEKTYFTTEQGI 132
           R PASLTKMM  Y+  + +++ KL     I  +    T   + S++YLKE    + +Q +
Sbjct: 56  RAPASLTKMMVAYVALKEIEAGKLRKEDVITATSVVNTVMWDESQMYLKEGEQISVDQLL 115

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             LI  SAND +    E ISGS  +F I M+ +A+ +GM++T + N +G+   +  +TA 
Sbjct: 116 AGLIVMSANDAALTLAERISGSVPQFIIRMNQEAQALGMKDTHFSNPAGITMPDHYSTAA 175

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           D  +L   +    P+Y  Y  +  F Y  R     N  L      DG+KTG+T+ +G+N+
Sbjct: 176 DLGLLAQAIVTKTPEYLYYSKMPSFSYNQRFHRATNLALKMDSTADGLKTGFTKAAGYNL 235

Query: 253 -VTSLRYKDDP------IVAVVMGMPTSQERDQKALELI 284
            +T+ R   +P      ++ +V+G P + +R + A +L+
Sbjct: 236 ALTAERPTLNPHIDKRRLIVIVLGTPNAIKRAEVANKLM 274


>gi|288549826|ref|ZP_05968319.2| D-alanyl-D-alanine carboxypeptidase DacA [Enterobacter cancerogenus
           ATCC 35316]
 gi|288317555|gb|EFC56493.1| D-alanyl-D-alanine carboxypeptidase DacA [Enterobacter cancerogenus
           ATCC 35316]
          Length = 347

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 119/226 (52%), Gaps = 7/226 (3%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLY 119
           +T   + + R PASLTK+MT Y++   + S ++  +  + V + A A  NP     S ++
Sbjct: 9   LTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKGNPVFDGSSLMF 68

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           LK     T       LI  S ND   A  + ++G + +F  +M++  +K+ +++T ++  
Sbjct: 69  LKPGDRVTVRDLSRGLIVDSGNDACVALADHVAGGQPQFVNMMNDYVQKLNLRDTHFETV 128

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNID 238
            GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL +K  N+D
Sbjct: 129 HGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVD 188

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           G+KTG+T  +GFN++ S       ++AVVMG  + + R+ +A +L+
Sbjct: 189 GLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSPKGREDQARKLL 234


>gi|225572270|ref|ZP_03781134.1| hypothetical protein RUMHYD_00564 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040275|gb|EEG50521.1| hypothetical protein RUMHYD_00564 [Blautia hydrogenotrophica DSM
           10507]
          Length = 414

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 117/211 (55%), Gaps = 9/211 (4%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE 129
           ++D  R PAS+TK+MTL +IF+ +++  L+++  +  S  A +   S++YL+E      E
Sbjct: 73  EKDTKRSPASITKIMTLILIFDAIENGSLNMDDMVTTSAYAKSMGGSQVYLEEGETQDVE 132

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQI 188
             I  ++  S ND S A  E I+GSE++F   M+++A+ +GM+NT +++  GL D +N  
Sbjct: 133 TMIKCIVIASGNDASVAMAEHIAGSEEEFVKKMNDRAQSLGMKNTHFEDCCGLTDSENHY 192

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNR------IITNHNKLLNKMHNIDGI 240
           TTA D A++   L  ++P+  +Y SI      ++ R       +TN NKL+       G+
Sbjct: 193 TTAYDVALMSRELITHYPKILEYSSIWMDTITHKTRQGTSEFGLTNTNKLIRSYEGCVGL 252

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           KTG T  + + +    +     +++VVM  P
Sbjct: 253 KTGSTSLAKYCVSAVAQKNGMSLISVVMAAP 283


>gi|85715534|ref|ZP_01046515.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
           sp. Nb-311A]
 gi|85697729|gb|EAQ35605.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
           sp. Nb-311A]
          Length = 413

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 113/218 (51%), Gaps = 5/218 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-----KTAATQNPSKLYLKEKTYF 126
           DE R P+S+ K+MT  ++F  ++  ++ L  +  +S     K  A    S ++    +  
Sbjct: 73  DELRAPSSMMKLMTAEVVFNAIRKGEIKLTDEYVISENTWRKGGAPSGGSTMFAAINSRV 132

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           + +  +   I +S ND   A  E I+G+E  FA  M+ +A+++G+  + + N++GL   +
Sbjct: 133 SVQDLLHGAIIQSGNDSCMALAEGIAGNESAFAEKMTARARELGLTRSTFANSNGLPHPD 192

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
              T R+ A+L   +   +P +YK F  R+F +      N N LL  M   DG+KTGYT+
Sbjct: 193 NKMTVRELAVLARHIILTYPDFYKLFGEREFTWNKIRQLNRNALLTAMDGADGLKTGYTK 252

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
             G+ +V S+      ++ VV G+ ++ +R   A +L+
Sbjct: 253 EGGYGMVGSVVQNGTRLIVVVNGLESADDRATAAKKLL 290


>gi|164688533|ref|ZP_02212561.1| hypothetical protein CLOBAR_02178 [Clostridium bartlettii DSM
           16795]
 gi|164602946|gb|EDQ96411.1| hypothetical protein CLOBAR_02178 [Clostridium bartlettii DSM
           16795]
          Length = 383

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 143/266 (53%), Gaps = 17/266 (6%)

Query: 35  LFLSIIMI----------SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKM 83
           +FL+II+I             + L+ K K S++++DV   ++   K    + P AS+TK+
Sbjct: 7   VFLAIILIISQSTLVFADKNGANLNLKCK-SAVLMDVTSGKVLYEKNCHEKLPPASVTKV 65

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT+ +I E ++S K+ L  ++ VS+TA++   S+++L+     T +  +  +   SAND 
Sbjct: 66  MTMLLICEAVESNKIKLTDEVTVSETASSMGGSQIFLEPNETQTVDTLLKGIAVASANDA 125

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG-ILLR 202
             A  E+I GS + F  +M+NKAK++GM++T + N +GL   N  T+A D A++   LL+
Sbjct: 126 CVAMAEYIGGSIEGFVDMMNNKAKELGMKDTNFVNTNGLPVDNHYTSAYDIALMSRELLK 185

Query: 203 KNFPQYYKYFSIRKFRYRNRIIT----NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
               + Y    + K     +  T    N NK++   +   G+KTG+T  + + +  S + 
Sbjct: 186 HEMIEKYLTTWMDKVVVGKKQATIGLANTNKMIKYYNGATGVKTGFTGEAKYCVSASAKR 245

Query: 259 KDDPIVAVVMGMPTSQERDQKALELI 284
               +V+VV+   TSQER + A  L+
Sbjct: 246 GKTHLVSVVLRGETSQERFKDASTLL 271


>gi|89074975|ref|ZP_01161420.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium sp.
           SKA34]
 gi|89049214|gb|EAR54778.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium sp.
           SKA34]
          Length = 391

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 122/225 (54%), Gaps = 5/225 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           I++D N  + + G  + E   PASLTK+MT ++I + +++  +  +  + +SK A  +N 
Sbjct: 42  ILVDYNSGKILAGNNEYEKLAPASLTKIMTSFVIGQEIKNGNISPDDTVVISKNAWAKNF 101

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              SK++L+             +I  S ND   A  E ++GS++ F  LM+  AK +GM+
Sbjct: 102 PGSSKMFLEVGKSVKVSDLNRGIIVDSGNDACVAMAEHVAGSQESFVDLMNGWAKNLGMK 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           +T + N  GL   +  TT  D +IL   L ++ P  +K +  + F Y      N N LL 
Sbjct: 162 STHFANVHGLDRPDLYTTPYDLSILTRSLIRDLPNEFKIYDEKSFTYNGITQYNRNGLLW 221

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           +K  ++DG+KTG+T N+G+++V++    +  +++VVMG  +   R
Sbjct: 222 DKSMHVDGLKTGHTDNAGYSLVSTATEGNMRLISVVMGTASKNAR 266


>gi|261405987|ref|YP_003242228.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp.
           Y412MC10]
 gi|261282450|gb|ACX64421.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp.
           Y412MC10]
          Length = 396

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 7/231 (3%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I++D +   +   K    + P AS+TK+MT+ +  E +   +L    ++  S+ AA+ 
Sbjct: 46  SAILLDADTGTIIYEKNSHDKLPPASITKVMTMLLTMEAIDEGQLKWTDKVRTSEYAASM 105

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+     T ++ +  +   S ND S A  E I+GSE+ F  +M+ KA ++GM++
Sbjct: 106 GGSQIFLEPGEEMTVDEMLKGIAMASGNDASVAMAEKIAGSEEGFVKMMNEKAAELGMKD 165

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHN 228
           T + N +GL  +N  T+A D A++   L K + Q  KY       +RK   +   + N N
Sbjct: 166 THFVNCNGLPAENHYTSAHDIAVMSRELLK-YDQITKYTGAYQDYLRKDSEKPFWLVNTN 224

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           KL+      DG+KTGYT  + F +  + +      VAVVMG P ++ R+ +
Sbjct: 225 KLVRFYTGADGLKTGYTSEAKFCLSATAKRDGLRAVAVVMGAPDTKTRNNE 275


>gi|332982023|ref|YP_004463464.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis
           50-1 BON]
 gi|332699701|gb|AEE96642.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis
           50-1 BON]
          Length = 394

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 133/233 (57%), Gaps = 5/233 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D    Q+   K    + P AS+TK+MT+ +I E L S ++     + VSK AA+ 
Sbjct: 52  SAVLMDAATGQLLYEKNAHEKLPIASITKIMTMDLIMEALDSGRIKPTDVVRVSKDAASL 111

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+E    T ++ + A+   SAND + A  E+I+G+++ F  +M+ KAK +GM +
Sbjct: 112 GGSQIWLEEGEEMTVDEMMKAIAVNSANDAAAAMAEYIAGTQENFVKMMNEKAKSLGMND 171

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI--RKFRYRNRIITNHNKLL 231
           T + N  GL D N  ++A D A++   L K+    +KY SI     R     + N NKL+
Sbjct: 172 TNFANVHGLDDDNHYSSAYDVALMSRELAKH-DGIFKYTSIWMDTLRDGETNLANTNKLI 230

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            + +  DG+KTG T  + + I  + +  D  ++AV++G PTSQ R  +A +L+
Sbjct: 231 -RTYGADGLKTGSTDKAKYCISATAKKDDMRLIAVILGGPTSQVRFDEAAKLL 282


>gi|92117541|ref|YP_577270.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis
           X14]
 gi|91800435|gb|ABE62810.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis
           X14]
          Length = 414

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 142/291 (48%), Gaps = 21/291 (7%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           E++     ++I+++ N   +  F++  DE   P+S+ K+MT+ ++F+ ++  ++ L  + 
Sbjct: 48  EIYETVAPTAILVEANSGSVL-FEKNADELHAPSSMMKLMTVEVVFDAIRKGQIKLTDEF 106

Query: 105 PVS-----KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            +S     K  A    S ++    +  + +  +   I +S ND   A  E I+G+E  FA
Sbjct: 107 VISENTWRKGGAPSGGSTMFAAINSRVSVDDLLHGAIIQSGNDSCMALAEGIAGNESAFA 166

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             M+ +A+ +GM  + + N++GL D     T R+ A+L   +   +P +YK F  R+F +
Sbjct: 167 EKMTARARDLGMTRSTFANSNGLPDPGNKMTVRELAVLARHIVLTYPDFYKLFGEREFTW 226

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ----- 274
                 N N LL  M   DG+KTGYT+  G+ +V S       ++ VV G+ ++      
Sbjct: 227 NKIRQFNRNPLLTAMEGADGLKTGYTKEGGYGMVGSAVQNGTRLIVVVNGLASADDRAAA 286

Query: 275 -----ERDQKALELITSFLEKKTLKHQQTHRKDNLS---STSLKKSLMIKK 317
                E   +  E+ T F  ++T+ + +    D+ S   + S    +M++K
Sbjct: 287 AKKLLEWGFRNFEVRTLFAAEQTIGYAKVFGGDSGSVRVAASEPVQVMVQK 337


>gi|258515293|ref|YP_003191515.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778998|gb|ACV62892.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 392

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 136/262 (51%), Gaps = 20/262 (7%)

Query: 34  ILFLSIIMISMASELHAKPKY------------SSIVIDVNKNQMTGFKQDEPRYP-ASL 80
           ++  +I ++S    + AKP              ++I+++ N  ++   KQ +   P AS+
Sbjct: 13  VIISAICIVSKPGTIQAKPAVQNNEAGLETTAEAAILMEANTGKILWSKQPDKELPMASV 72

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           TK+MT+ +  E + + K+ L  +I  S+ A     S++YL+     + E+ ++++   SA
Sbjct: 73  TKIMTMLLAVEAVDAGKVKLTDKITTSENAWNMGGSQIYLEPGEELSMEEMLISIAVGSA 132

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA-ILGI 199
           ND   A  E + GSE+ F  +M+ KAK++G+ +T + N +GL  +N  T+A D A I+  
Sbjct: 133 NDACVAVAEHLGGSEEAFVGMMNKKAKELGLAHTNFANTNGLPVENHYTSAHDMAMIIKE 192

Query: 200 LLRKNFPQYYKYFSIRKFRYRNR--IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
            LR   P + K  SI ++  R    ++ N NKLL         KTG+T  + + + +++ 
Sbjct: 193 ALR--HPLFVKVSSIYRYDLRGGDFVLWNTNKLLKWYEGTVAGKTGWTNEAKYCLASAVE 250

Query: 258 YKDDPIVAVVMGM--PTSQERD 277
            K   ++AVV+G   P S  R+
Sbjct: 251 RKGLRLIAVVLGTAEPKSHFRE 272


>gi|297616714|ref|YP_003701873.1| serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144551|gb|ADI01308.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 381

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 131/251 (52%), Gaps = 5/251 (1%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSS-IVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           +R + LM  +LF S+   + A       +  S +++D +  ++   K +  R P AS+TK
Sbjct: 5   KRLLWLMAWVLFFSLAFPTTAWGAVVDVEADSYVLMDADSGKVLLAKNEHKRLPPASMTK 64

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MTL +  E L   K+ L  ++  S+ A     S++YL+     T E  ++A+   SAND
Sbjct: 65  LMTLILAMEDLYKGKVDLKEKVVASENAWKLGGSQIYLEPGEEMTFEDMVIAIAVGSAND 124

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
              A  E + GS ++F   M+ KAK++ +++T + NA GL D +  ++A D A++     
Sbjct: 125 ACVAVAEHLDGSHEEFVKRMNAKAKELRLKDTHFVNAYGLPDPDHYSSAYDLALMA-RYA 183

Query: 203 KNFPQYYKYFSIRKFRYRNRI--ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
             +P+  ++ SI+++  R     + N NKLL      DG KTG+T  + F +V++ +   
Sbjct: 184 LCYPKLLEFTSIKEYNLRQGEFKLYNTNKLLWHYPGTDGFKTGWTNEAKFCLVSTAKRNG 243

Query: 261 DPIVAVVMGMP 271
             ++ VVM  P
Sbjct: 244 LRLICVVMASP 254


>gi|182416858|ref|ZP_02948244.1| D-alanyl-D-alanine carboxypeptidase [Clostridium butyricum 5521]
 gi|237669065|ref|ZP_04529049.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182379320|gb|EDT76819.1| D-alanyl-D-alanine carboxypeptidase [Clostridium butyricum 5521]
 gi|237657413|gb|EEP54969.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 461

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 113/214 (52%), Gaps = 6/214 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   PAS+TK+MT+ +  E + S K+ L+ ++  S+ A     S + L      T E+ 
Sbjct: 123 DEKFAPASVTKIMTMLLTIEAVDSGKIALDDKVTCSENAKKMGGSTMLLDTGEIRTVEEL 182

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +   S ND + A  E++ G+E  F  +M+ +A+++GM NT +KN +GL     ++TA
Sbjct: 183 LKGVAIASGNDAAVALAEYLGGTENDFVGMMNKRAEELGMTNTTFKNCNGLPADGHLSTA 242

Query: 192 RDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
            D A +   L K+ P   KY      +I + R     + NHNKL+      DG+KTG+T 
Sbjct: 243 NDIAKMSKELLKH-PTILKYTGTYMDTITEGRKSPIELVNHNKLVRFFDGCDGLKTGFTN 301

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
            + + I  +       +++V+MG PT + R++ A
Sbjct: 302 EAKYCISATATRNGVRMLSVIMGAPTYKIRNRDA 335


>gi|299769193|ref|YP_003731219.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter sp. DR1]
 gi|298699281|gb|ADI89846.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter sp. DR1]
          Length = 439

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 118/220 (53%), Gaps = 11/220 (5%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKL---HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           R PASLTKMM  YI  + +++ KL    + T  PV       + S++YLK     + +Q 
Sbjct: 56  RAPASLTKMMVAYIALKEIKAGKLKKEEIITATPVVGVV-QWDESQMYLKAGEQISVDQL 114

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  LI  SAND +    E ISG    F   M+ +A+ +GM++T + N  G+   +  TTA
Sbjct: 115 LAGLIVMSANDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPPGITMPDHYTTA 174

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            D ++LG  + K  P+Y  Y  +  F Y  R     N  L    ++DG+KTGYT+ +G+N
Sbjct: 175 HDLSLLGQAVIKETPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYN 234

Query: 252 I-VTSLR--YKDD----PIVAVVMGMPTSQERDQKALELI 284
           + +T+ R  +  D     ++ +V+G P++ +R + A +L+
Sbjct: 235 LALTASRPSFSSDLAQRRLLVIVLGTPSAVKRAEIADKLM 274


>gi|220931566|ref|YP_002508474.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halothermothrix orenii H
           168]
 gi|219992876|gb|ACL69479.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halothermothrix orenii H
           168]
          Length = 377

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/212 (36%), Positives = 112/212 (52%), Gaps = 12/212 (5%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS TK++T  I  E     +  LN  + VS+ AA Q  S ++L+E      E  +  ++
Sbjct: 60  PASTTKILTTIIAIE-----EGELNEMVTVSRRAAYQEGSSIWLQEGEKLPLEDLLYGVM 114

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A  E ISGS KKF+ LM+ +AK+IG  N+ + N SGL      +TA D A+
Sbjct: 115 LASGNDAAVAVAEHISGSVKKFSELMNKRAKEIGATNSNFLNPSGLPQSGHYSTAHDLAM 174

Query: 197 LGILLRKN--FPQY----YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           +     KN  F +     YK  S     + +R + NHNKLL K  +I G KTGYTR +G 
Sbjct: 175 IMRYALKNDIFARITSTKYKTISWPGKEW-DRGLRNHNKLLWKYPDITGGKTGYTRAAGR 233

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            +V S +  +  +VAVV+  P      +K L+
Sbjct: 234 CLVASAKRDNRHVVAVVLNCPNDWVEIRKLLD 265


>gi|326402423|ref|YP_004282504.1| serine-type D-Ala-D-Ala carboxypeptidase [Acidiphilium multivorum
           AIU301]
 gi|325049284|dbj|BAJ79622.1| serine-type D-Ala-D-Ala carboxypeptidase [Acidiphilium multivorum
           AIU301]
          Length = 422

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 135/258 (52%), Gaps = 17/258 (6%)

Query: 33  KILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFE 91
            +  L+I  + M   L  +  Y  +++D +   +   K  D+P  PASLTK+MT Y+ ++
Sbjct: 60  PVAPLAIPGVPMPPTLPQQASY--VLMDADTGAVIAAKAPDQPWPPASLTKLMTAYLTYQ 117

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            +    L ++  +PVS +A     S++++      T +Q +  LI  S ND + A  + +
Sbjct: 118 AVAHGSLKMDQTVPVSVSAWHTGGSRMFISPGMTVTVDQLLHGLIIDSGNDAAVALAQAV 177

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-- 209
           +GS   F  LM+++AK +G+++T Y N  GL + +  TTA D A L   + + +PQ+   
Sbjct: 178 AGSRSGFVGLMNHEAKALGLKSTHYTNVDGLPNPDLRTTAMDVAKLSRDIVRTYPQFLKI 237

Query: 210 ---KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI-VTSLRYKDDPIVA 265
              K+F+  K R R     + N +L     +DG+KTG T+ +G  I  T+LR     ++A
Sbjct: 238 SVKKHFTFDKIRQR-----SWNPVLFHDPTVDGLKTGRTKEAGHCIDATALRNGRR-LIA 291

Query: 266 VVMGMP--TSQERDQKAL 281
           VV+G P  T    D +AL
Sbjct: 292 VVLGGPSWTVSTHDIEAL 309


>gi|148259268|ref|YP_001233395.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidiphilium cryptum
           JF-5]
 gi|146400949|gb|ABQ29476.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Acidiphilium cryptum JF-5]
          Length = 423

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 135/258 (52%), Gaps = 17/258 (6%)

Query: 33  KILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFE 91
            +  L+I  + M   L  +  Y  +++D +   +   K  D+P  PASLTK+MT Y+ ++
Sbjct: 61  PVAPLAIPGVPMPPTLPQQASY--VLMDADTGAVIAAKAPDQPWPPASLTKLMTAYLTYQ 118

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            +    L ++  +PVS +A     S++++      T +Q +  LI  S ND + A  + +
Sbjct: 119 AVAHGSLKMDQTVPVSVSAWHTGGSRMFISPGMTVTVDQLLHGLIIDSGNDAAVALAQAV 178

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-- 209
           +GS   F  LM+++AK +G+++T Y N  GL + +  TTA D A L   + + +PQ+   
Sbjct: 179 AGSRSGFVGLMNHEAKALGLKSTHYTNVDGLPNPDLRTTAMDVAKLSRDIVRTYPQFLKI 238

Query: 210 ---KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI-VTSLRYKDDPIVA 265
              K+F+  K R R     + N +L     +DG+KTG T+ +G  I  T+LR     ++A
Sbjct: 239 SVKKHFTFDKIRQR-----SWNPVLFHDPTVDGLKTGRTKEAGHCIDATALRNGRR-LIA 292

Query: 266 VVMGMP--TSQERDQKAL 281
           VV+G P  T    D +AL
Sbjct: 293 VVLGGPSWTVSTHDIEAL 310


>gi|302390892|ref|YP_003826712.1| serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum
           DSM 5501]
 gi|302202969|gb|ADL11647.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum
           DSM 5501]
          Length = 386

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 146/275 (53%), Gaps = 11/275 (4%)

Query: 34  ILFLSIIMISMASELHA--KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIF 90
           IL LS +++  +  L A      S+I+++    Q+   K   E   PAS+TK+MTL +  
Sbjct: 13  ILVLSSLLVVASPVLAAFDIEAESAILMEAETGQVLFTKNVTEELPPASITKIMTLLLAM 72

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           E + S +++L+  +  S+ A++   S++YL  K     E  + ++   SAND   A GE 
Sbjct: 73  EAIDSGQMNLDDTVIASEFASSMGGSQIYLAPKEKMKVETLLESIAIASANDACVALGEH 132

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--HDKNQITTARDQAILGILLRKNFPQY 208
           I+GS + F  +M+ +A ++G+++T + N++GL   D    ++ARD AI+   L    P+ 
Sbjct: 133 IAGSYQNFIKMMNERASELGLKDTNFINSTGLPTDDGAHYSSARDIAIMSRELINKHPKV 192

Query: 209 YKYFSIRKFRYRNRIIT--NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
             + SI   + RN   T  N N L+N     DG+KTG+T  +G+ +  + +     +++V
Sbjct: 193 LDWTSIWIDKIRNGEFTLYNTNDLINYYPGADGLKTGWTDKAGYCLAATAKRDGMRLISV 252

Query: 267 VMGMPTSQERDQKALELI----TSFLEKKTLKHQQ 297
           VM   + + R +++ +L+    + F  KK +K  +
Sbjct: 253 VMKTDSEEARMEESAKLLNYGFSRFDLKKVVKQGE 287


>gi|227499916|ref|ZP_03930009.1| serine family D-Ala-D-Ala carboxypeptidase [Anaerococcus tetradius
           ATCC 35098]
 gi|227218025|gb|EEI83298.1| serine family D-Ala-D-Ala carboxypeptidase [Anaerococcus tetradius
           ATCC 35098]
          Length = 402

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 142/277 (51%), Gaps = 28/277 (10%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVN------KNQMTGF-----KQDEPRYPASLTK 82
           I  L+++ + M  E+ A  +   + +D N       N+ TG        DE R  ASLTK
Sbjct: 9   ISLLTLVFLLMPGEIFA-AQTRVVGLDSNVSSYLIGNEETGDVYYEKNADEARPMASLTK 67

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +MT  ++ + ++  K++LNT +   K A    +   S L LKEK  ++ E+ +  LI  S
Sbjct: 68  LMTFLLVRDAIEEGKINLNTSVKADKKAEELTSWEYSSLGLKEKESYSVEELLQGLIAVS 127

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK----NQITTARDQA 195
            ND +    + ++GSE+KFA LM+ KAK++G+ +  Y NASG+  K    NQ ++ARD  
Sbjct: 128 GNDCAYLLAKTVAGSEEKFATLMNEKAKELGLSSQKYYNASGIETKDNKENQ-SSARDLF 186

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRII--TNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            L   + + +P   +Y ++ +     + I  T+   L   +  +DG+KTG T  +G+ +V
Sbjct: 187 KLSSFIVRKYPDILRYSTMDEVNIPGKGIRKTSTIPLRKDIKGVDGLKTGTTDKAGYCLV 246

Query: 254 TSLRYK-----DD-PIVAVVMGMPTSQERDQKALELI 284
           T++  K     DD   + VVMG      R+    +LI
Sbjct: 247 TTVDMKELDGSDDFRCIGVVMGADQKDTRESVMSDLI 283


>gi|332971215|gb|EGK10178.1| serine-type D-Ala-D-Ala carboxypeptidase [Desmospora sp. 8437]
          Length = 418

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 139/270 (51%), Gaps = 28/270 (10%)

Query: 35  LFLSIIMISMASELHAKPKY--------SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMT 85
           + LS+  +    E+ A+P+         S +++++   + + G ++  P  PASLTK+MT
Sbjct: 24  VLLSVGSLLSVGEVFAEPQAEPLDIQTRSYVLMEMETGRVLAGKEEKHPYPPASLTKIMT 83

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
            Y++ E ++S ++    ++ +SK AA+   +++ L      T E+   A+   SAND S 
Sbjct: 84  EYLVLEEVKSGRIRWKDEVKISKNAASIGEAQVNLVAGEKRTVEELFHAMAIHSANDASV 143

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN----------QITTARDQA 195
           A  E ISGSE+ F   M+ +AK++G++ + + N +GL  ++             +A D A
Sbjct: 144 ALAEHISGSERAFVGKMNKEAKRLGLKKSHFINCTGLPSRSYPQPPEVKGEHRMSAEDIA 203

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNR-----IITNHNKLL-NKMH---NIDGIKTGYTR 246
            L   L ++ PQ  +  S+ ++ +R       I+ N N++L    H    +DG+KTGYTR
Sbjct: 204 RLTRRLLRDHPQVIRTTSLPEYIFRQGEKRELILPNSNRMLPGSPHFYDGVDGVKTGYTR 263

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
            +G++   + R     ++ VVMG  +   R
Sbjct: 264 EAGYSFTGTARRDGMRLITVVMGTDSKSRR 293


>gi|170744322|ref|YP_001772977.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp.
           4-46]
 gi|168198596|gb|ACA20543.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp.
           4-46]
          Length = 402

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 117/218 (53%), Gaps = 5/218 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYF 126
           DEP  PAS+ K+MT+ +IF+ ++  +L+ +++ P+S+ A     A    S ++ +  +  
Sbjct: 58  DEPFSPASMAKLMTVEVIFDEMRKGRLNQDSEFPISENAWKHGGAGGGGSSMFAQLNSKV 117

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
                +  +I +S ND + A  E I G+E  FA +M+  A++IG+  + ++N +G    +
Sbjct: 118 KLPDLLRGIIVQSGNDAAIAAAEAIGGTEDNFAQIMNRHAREIGLTRSTFRNPTGYSAPD 177

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           Q  TARD A L I L + +P  YK FS R+F +      N N LL      DG+KTGY  
Sbjct: 178 QKVTARDLAKLAIHLIETYPDEYKLFSEREFTWNKIRQQNRNPLLTMDLGADGLKTGYLE 237

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            SG+ +  S       ++ VV G+  + +R  ++ +L+
Sbjct: 238 ESGYGLTGSAVQNGQRLILVVSGLKKASDRAAESRKLL 275


>gi|218288835|ref|ZP_03493086.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240924|gb|EED08101.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 289

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 121/224 (54%), Gaps = 13/224 (5%)

Query: 55  SSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++V D  N+  +   + DEP YPAS TK+MT  ++ ++LQ      +  + +S+TA+ Q
Sbjct: 45  AAVVYDATNRKVLYDKRGDEPMYPASTTKLMTAILLVQHLQP-----DDPVYISETASRQ 99

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
              +L L+  T  T EQ +LALI +SANDV+    E I GS++ FA +M+ +A+ IG  +
Sbjct: 100 PRVRLGLRPGTELTAEQALLALIMKSANDVAYGIAETIGGSQEGFARMMNVEARLIGCTH 159

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-- 231
           T +   +GLH     T+A+D A++       +P+  +     +     + I N N+LL  
Sbjct: 160 TQFVTPNGLHADAHTTSAKDIALI-TAKAITYPRIVRAMQTPQATIAGKTIRNGNRLLYS 218

Query: 232 --NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP--IVAVVMGMP 271
               +    G KTG+T  + + + T++R   D   +V+VV G P
Sbjct: 219 PPASIGEFIGGKTGFTSRAMYCLATAVRRPSDGHVLVSVVFGAP 262


>gi|296445856|ref|ZP_06887808.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus
           trichosporium OB3b]
 gi|296256684|gb|EFH03759.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus
           trichosporium OB3b]
          Length = 400

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 114/230 (49%), Gaps = 9/230 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYFTTEQG 131
           PAS  K+MT  I+F  +   +L L+ +  VS+ A     A    S ++L   +    E  
Sbjct: 64  PASTVKVMTAEIVFHEIAEGRLKLDDEFTVSEHAWRSGGAPAGGSAMFLPVNSRAKVEDL 123

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           I  L+  S ND +    E ++GSE+ F   M+ +A ++G+  +I+ N  G    +Q  T 
Sbjct: 124 IRGLVIVSGNDAAITLAEGVAGSEEAFVGRMNKRASELGLAKSIFGNPWGQAGPDQKVTP 183

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           R+   L   + + +P +Y+YF  ++F +      N N LL      DG+KTG   +SGF 
Sbjct: 184 REMVQLAAHVIETYPDFYRYFGEKEFTWNKIRQQNRNPLLTMSLGADGLKTGNIDSSGFG 243

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT----SFLEKKTLKHQQ 297
           +V S    D  ++  V G  T++ER ++A +L+     +F EK+  K  +
Sbjct: 244 LVGSAVQDDRRLIVAVYGAKTAKERAEEARKLLQWGFRNFEEKQLFKAGE 293


>gi|291547442|emb|CBL20550.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. SR1/5]
          Length = 429

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 125/228 (54%), Gaps = 19/228 (8%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK---TA 110
           +++++DVN   +   K  D   YPAS+TK++T  +  E L +K     T I VS+   T+
Sbjct: 87  AAVLMDVNTEAVLYSKNADTQLYPASITKILTTLLACENLNAK-----TNITVSEKASTS 141

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            T   S +Y      FT +Q ++A++ +SAN++S A  E +SGS KKFA LM+ +AK  G
Sbjct: 142 VTAGDSSIYAAPGEKFTRDQALMAVMLQSANEMSVAIAEEVSGSVKKFAELMNWRAKLFG 201

Query: 171 MQNTIYKNASGLHDKNQITTARD------QAILGILLRKNFP-QYYKYFSIRKFRYRNRI 223
            +NT + N +GL D+N  TTA D       A L  L R+    +YY+     KF    ++
Sbjct: 202 CKNTHFNNPNGLPDENHYTTASDMAKIAKSAWLNPLFRRYCTKRYYEIPPTNKFAEARQL 261

Query: 224 ITNHNKLLNKMHNIDGI---KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           + +H  + N  +  +G+   KTGYT  SG  +VT  +  +  +VAV++
Sbjct: 262 LNHHKMMKNGEYYYEGVRGGKTGYTDASGNTLVTYCKRGNITLVAVIL 309


>gi|323136276|ref|ZP_08071358.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocystis sp. ATCC
           49242]
 gi|322398350|gb|EFY00870.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocystis sp. ATCC
           49242]
          Length = 393

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 126/254 (49%), Gaps = 12/254 (4%)

Query: 55  SSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-- 110
           ++I+ID   N +  F++  D+   PAS  K++T  +IF  L   +L L     VS+ A  
Sbjct: 34  NAILIDAGTNTVL-FEKGADDLVTPASTVKILTAEMIFRELTEGRLKLGDVFTVSEYAWR 92

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
              A    S ++LK  +  T E  +  L+  S ND +    E ++GSE+ F + M+ +A 
Sbjct: 93  NGGAPAGGSAMFLKVNSQATVEDLLRGLLIDSGNDAALVLAEGVAGSEEAFVMRMNKRAS 152

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           ++G+  + + N  G    +Q  T R+ A L + + + +P +YKYF  ++F + N    N 
Sbjct: 153 ELGLVKSRFGNPWGKASDDQKVTPREVAKLALHVIRTYPDFYKYFGEKEFTWNNIRQQNR 212

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT-- 285
           N LL      DG+KTG      F IV S   +   ++  V G  T++ER ++A +L+   
Sbjct: 213 NPLLTMSIGADGLKTGNIEKGDFGIVGSANQEGRRLIVAVYGAKTAKERAEEARKLLQWG 272

Query: 286 --SFLEKKTLKHQQ 297
             +F EK   K  +
Sbjct: 273 FRNFEEKDLFKAGE 286


>gi|222148588|ref|YP_002549545.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
           [Agrobacterium vitis S4]
 gi|221735574|gb|ACM36537.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
           [Agrobacterium vitis S4]
          Length = 411

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 115/233 (49%), Gaps = 14/233 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYF 126
           D+P   ASL+KMM   ++ + L+S +L L+   PVS+ A     A    + ++   ++  
Sbjct: 78  DQPFTSASLSKMMVAEVVLDALKSGRLTLSQDFPVSEFAWRTGGAPSRTATMFAAVRSRV 137

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
             E  +  ++ + AND      E ++GSE+ F  LM+ +A  +G++++ + NA+GL D  
Sbjct: 138 PVEALLKGVMVQMANDACLILAEGMAGSEQGFVKLMNERAAALGLKDSHFANATGLPDPG 197

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
              + RD   L   L+ N+P +Y  ++   F +      N N+LL +   +DG+  G+  
Sbjct: 198 NKVSLRDMITLAQALKSNYPDFYALYAQPDFEWNKIFQRNRNRLLGQSPGVDGLAAGFAD 257

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTS------QERDQKALELITSFLEKKTL 293
             G++IV S +      V + +G+  S      QE   KAL    S  EK+ L
Sbjct: 258 GEGYSIVASAQQNG---VRLYLGLAGSESDKSRQEDAAKALAWGFSAFEKRRL 307


>gi|152975284|ref|YP_001374801.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024036|gb|ABS21806.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH
           391-98]
          Length = 339

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 128/235 (54%), Gaps = 13/235 (5%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++I+ID +  ++     ++E   PAS++KMMT Y++ E +   K+H   Q+ +S  +A  
Sbjct: 76  AAIIIDASDGEVIYQNNENETFAPASMSKMMTAYLLLENIHKGKVHWEDQVKISAKSAQT 135

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +K+ L+     T +    AL+ +SAN+ + A  E ++ +EK F  +M+ KAK + + N
Sbjct: 136 EGAKIPLQMNDVVTVKDLFHALMIQSANNAAVALAEHMAKTEKNFVQIMNQKAKDLELSN 195

Query: 174 -TIYKNASGLHDKNQITT---ARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNH 227
            T + NASGL + +   T   A D A L   L K +P+  +   +R+    ++N  +T+ 
Sbjct: 196 KTKFANASGLQEPDGSETKMPAADVAKLAYHLIKEYPEILEVTHLRRSQLAFKNISVTST 255

Query: 228 NKLLN------KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           N++LN       +  +DG+KTG+T ++G+    + +  D  I+ VVMG  +  +R
Sbjct: 256 NEMLNTANKNLHIEGMDGLKTGFTDSAGYCFTGTAKQGDKRIITVVMGTKSQTKR 310


>gi|325289983|ref|YP_004266164.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965384|gb|ADY56163.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 389

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 122/220 (55%), Gaps = 4/220 (1%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+ID +  ++   K    R  PAS+TK+MTL I  E L+S K++L   +  S+ A + 
Sbjct: 40  SAILIDASSGKVLYEKDAHKRLAPASVTKLMTLLIAAEALESGKVNLKDTVTASERACSM 99

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S++YL+     + E+ ++++   SAND   A  E I+GS ++F   M+ KAKK+G+ +
Sbjct: 100 GGSQIYLEVGEKLSLEEMLISIAVGSANDACVAVAEHINGSLEEFVHQMNEKAKKLGLVD 159

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR--IITNHNKLL 231
           T + N +GL  +   T+A D AI+     K +P   K  SI+++  R     + N NKLL
Sbjct: 160 TNFINDNGLPAEGHYTSAYDLAIIAKESLK-YPLISKLTSIKEYDLRGGKFKLYNTNKLL 218

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
                  G+KTG+T+ + + + +++      ++ VVM +P
Sbjct: 219 WWYEGTSGLKTGWTQEAKYCLASTVERNGLKLICVVMAVP 258


>gi|262375440|ref|ZP_06068673.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter lwoffii SH145]
 gi|262309694|gb|EEY90824.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter lwoffii SH145]
          Length = 437

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 113/216 (52%), Gaps = 9/216 (4%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT--QNPSKLYLKEKTYFTTE 129
           D  R PASLTKMM  YI  + +++ KL  N  +  +    T   + S++YLKE    + +
Sbjct: 53  DVQRAPASLTKMMVAYIALKEIEAGKLDKNEVLTATSVVKTVMWDESQMYLKEGDLISVD 112

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           Q +  LI  SAND +    E ISG   +F   M+ +AK +GMQ+T ++N +G+      +
Sbjct: 113 QLLAGLIIMSANDAAVTLAEKISGGIPQFVERMNQEAKALGMQHTNFQNPAGITMPEHYS 172

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
           TA D A L + +    P Y  Y     F Y        N++L     +DG+KTG+TR +G
Sbjct: 173 TAADLARLSMAVVNETPDYLYYSKQPSFTYNQHFHRATNRVLQVDPTVDGLKTGFTRAAG 232

Query: 250 FNI-VTSLRYKDD---P---IVAVVMGMPTSQERDQ 278
           +N+ +T+ R   D   P   ++ VV+G  ++ +R +
Sbjct: 233 YNLALTANRVTADFEMPNRRLIVVVLGTNSAAKRAE 268


>gi|295706485|ref|YP_003599560.1| D-alanine-D-alanine carboxypetidase [Bacillus megaterium DSM 319]
 gi|294804144|gb|ADF41210.1| D-alanine-D-alanine carboxypetidase [Bacillus megaterium DSM 319]
          Length = 388

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 120/213 (56%), Gaps = 6/213 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +I E L   K+ L  ++  S+ AA+   S+++L+     T    +  + 
Sbjct: 61  PASMTKIMTMILIMEALDKGKITLKDKVRASEYAASMGGSQIFLEPGEEMTVNDLLKGIA 120

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND S A  E ++GSE+KF   M+ KAK++G+ +T ++N +GL  +N  +TA D A+
Sbjct: 121 IGSGNDASMAMAEHLAGSEEKFVAKMNQKAKELGLTHTKFQNPTGLPVENHYSTAHDMAM 180

Query: 197 LGILLRK-----NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +G  L K     N+   Y+ + +R    +   + N N+L+     +DG+KTG+T  + + 
Sbjct: 181 MGRELLKYEKIINYTSKYEAY-LRTDTDKKFWLVNTNRLVKFYPGVDGLKTGFTGQAKYC 239

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +  + +  +  ++AVV G  T ++R+ +  +++
Sbjct: 240 LTATAKKGNMRVLAVVFGASTPKDRNNQVTKML 272


>gi|320120306|gb|EFE28569.2| serine-type D-Ala-D-Ala carboxypeptidase [Filifactor alocis ATCC
           35896]
          Length = 443

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 115/220 (52%), Gaps = 27/220 (12%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE 129
           ++D P YPAS TK+MT  +  E+L      LN +I V +     + S +YL     FT E
Sbjct: 59  QKDVPVYPASTTKIMTALLTLEHLD-----LNQKITVPEDMGPADGSAMYLLPGETFTVE 113

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           + +  L+ +SAND +    + ISGS ++F+ LM+ +A++IG QNT + N +GLHD N  T
Sbjct: 114 ELLQGLLVKSANDAAILLAKNISGSVEEFSNLMNQRAQEIGCQNTHFVNPNGLHDPNHTT 173

Query: 190 TARDQAILGILLRKNFPQYYKYFS--------------IRKFRYRNRIITNHNKL----- 230
           +A D A++     KN P++ +  S              IR FR  N+ + +   +     
Sbjct: 174 SAYDLALIAREAMKN-PKFRELVSTDFVQIHATEQTPEIRYFRNTNKFLWSKQTIDYKGI 232

Query: 231 --LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
               K   IDGIKTGYT  +G  +V+S       ++AVVM
Sbjct: 233 STPIKYDVIDGIKTGYTPEAGKCLVSSGEKNGIRLIAVVM 272


>gi|205373761|ref|ZP_03226563.1| penicilin binding protein (putative D-alanyl-D-alanine
           carboxypeptidase) [Bacillus coahuilensis m4-4]
          Length = 322

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 117/206 (56%), Gaps = 6/206 (2%)

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT+ +I E ++  +++   ++  S+ AA+   S+++L+     T E+ +  +   SAND 
Sbjct: 1   MTMILIMEAIEKGQINWEDKVRTSEYAASMGGSQIFLEPGEEMTVEEMLKGIAIGSANDA 60

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           S A  EFI+GSE+ F  +M+NK +++ +++T+++N +GL   N  ++A D A++   L K
Sbjct: 61  SVAMAEFIAGSEEAFVEMMNNKVEELKLKDTVFQNPTGLPADNHFSSAYDMAMMAKELLK 120

Query: 204 -----NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
                 F   Y+ + +R+       + N NKL+     +DG+KTGYT  + + +  + + 
Sbjct: 121 YEKITQFTGTYEDY-LRENTDEKFWLVNTNKLVRFYDGVDGLKTGYTSEAKYCLTATAKV 179

Query: 259 KDDPIVAVVMGMPTSQERDQKALELI 284
            +  +VAVV G PT +ER+ +  +++
Sbjct: 180 GNMRVVAVVFGEPTPKERNAEVSKML 205


>gi|293609789|ref|ZP_06692091.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828241|gb|EFF86604.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 439

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 119/220 (54%), Gaps = 11/220 (5%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKL---HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           R PASLTKMM  YI  + +++ KL    + T  PV  +    + S++YLK     + +Q 
Sbjct: 56  RAPASLTKMMVAYIALKEIKAGKLKKEEIITATPVV-SVVQWDESQMYLKAGEQISVDQL 114

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  LI  SAND +    E ISG   +F   M+ +A+ +GM++T + N +G+   +  TTA
Sbjct: 115 LAGLIVMSANDAAVTLAEKISGDVPRFVQRMNQEAQALGMKDTHFSNPAGITMPDHFTTA 174

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            D ++L   + K  P+Y  Y  +  F Y  R     N  L     +DG+KTGYT+ +G+N
Sbjct: 175 HDLSLLSQAVIKQTPEYLHYSKMPNFSYNQRFHHATNLALKYDPYVDGLKTGYTKAAGYN 234

Query: 252 I-VTSLR--YKDD----PIVAVVMGMPTSQERDQKALELI 284
           + +T+ R  +  D     ++ +V+G P++ +R + A +L+
Sbjct: 235 LALTASRPSFSSDLTQRRLLVIVLGTPSAVKRAEIADKLM 274


>gi|227822156|ref|YP_002826127.1| penicillin binding protein [Sinorhizobium fredii NGR234]
 gi|227341156|gb|ACP25374.1| penicillin binding protein [Sinorhizobium fredii NGR234]
          Length = 384

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 117/237 (49%), Gaps = 9/237 (3%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTY 125
           +DEP  PASL K+M + ++FE L+  +L      PVS+ A     A    S ++   K+ 
Sbjct: 50  EDEPVPPASLAKLMAMEVVFEALEKGELTQEAVFPVSEHAWRTGGAPSGTSTMFAAIKSQ 109

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
                 I     + AND      E ++GSE  FA  M+ +A+ +GM    +KNA+GL D 
Sbjct: 110 VRVADLIQGATVQLANDACIILAEGMAGSEAAFAQRMNARARDLGMPVATFKNATGLPDP 169

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
               T R+   L   LR+    +Y+ ++  +F +   +  N N L+     +DG+ TG+ 
Sbjct: 170 GNRVTMRELVTLSRHLREAHANFYRLYAQPEFEWNKILQRNKNPLIAANVGVDGLATGFA 229

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI----TSFLEKKTLKHQQT 298
              GF++  S++  D  +   + G+ T +ER +++  ++    T+F +++   + +T
Sbjct: 230 EGFGFSLAASMQRGDRRVYLAMGGLETDKERTEESRRVLDWAMTNFEKRRIFANGET 286


>gi|74316665|ref|YP_314405.1| serine-type D-ala-D-ala-carboxypeptidase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74056160|gb|AAZ96600.1| serine-type D-ala-D-ala-carboxypeptidase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 402

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 115/220 (52%), Gaps = 3/220 (1%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT ++    LQ  ++  N  + +S+ A     SK++++          +  +I
Sbjct: 76  PASLTKLMTSHVAALELQRGRIKENDLVTISEKAWRMGGSKMFVRVGNQVAVHDLLRGII 135

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E ++G E  FA LM+ +AK++G+ +T + NA+G   +   ++A D A 
Sbjct: 136 VQSGNDASIALAEHLAGGEDTFAALMNQEAKRLGLADTHFVNATGWPAEGHYSSALDMAK 195

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   +    P +Y  ++ ++F +      N N LL +  ++DG+KTG+T  +G+ +V S 
Sbjct: 196 LARAIIIEDPAHYGLYAEKEFVWNGIKQPNRNLLLWRDPSVDGLKTGHTEEAGYCLVASS 255

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTL 293
           +     ++A V G  +   R  +  +L+    +F + KT 
Sbjct: 256 QRDGQRMIAAVFGTESEAARATETAKLLAYGFNFFDSKTF 295


>gi|862471|gb|AAC36937.1| ORF4 [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 255

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 118/227 (51%), Gaps = 8/227 (3%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           L+   +S A +  A    + +++D    Q +T   + + R PASLTK+MT Y++   + S
Sbjct: 22  LAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDS 81

Query: 96  KKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            ++  +  + V + A A  NP     S ++LKE    +       LI  S ND   A  +
Sbjct: 82  HRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALAD 141

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
           +I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D A+L   +    P++Y
Sbjct: 142 YIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFY 201

Query: 210 KYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTS 255
             +S +   +      N N LL +K  +IDG+KTG+T  +GFN++ S
Sbjct: 202 HMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNLIAS 248


>gi|229084940|ref|ZP_04217192.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-44]
 gi|228698256|gb|EEL50989.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-44]
          Length = 340

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 129/235 (54%), Gaps = 13/235 (5%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++++ID +  Q M    ++E   PAS++KMMT YI+ E + + K+H + Q+ +S  +A  
Sbjct: 90  AAMIIDASDGQVMYKNNEEEQLAPASMSKMMTAYILLENIHNGKVHWDDQVKISAKSAQA 149

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM-Q 172
             +++ ++     T +    AL+ +SAN+ + A  E ++ +E+ FA +M+  AK++ + +
Sbjct: 150 EGARIPVQTGDVLTVKDLYHALMIQSANNSAVALAEHMAKTEQDFAQVMNQTAKQLELSE 209

Query: 173 NTIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIITNH 227
            T + NASGL + +      T  D A L   L K++P+      +R  +  + N  +T+ 
Sbjct: 210 ATKFANASGLQEADGSETKMTVADVAKLAYRLVKDYPEILDVTHLRQSQLAFNNITVTST 269

Query: 228 NKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           N++LN       M  +DG+KTG+T ++G+    + +  D  IV VVMG  +  +R
Sbjct: 270 NEMLNPANQELYMEGMDGLKTGFTDSAGYCFTGTAKQGDKRIVTVVMGTKSEMKR 324


>gi|254228127|ref|ZP_04921557.1| beta-lactamase [Vibrio sp. Ex25]
 gi|151939623|gb|EDN58451.1| beta-lactamase [Vibrio sp. Ex25]
          Length = 249

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 100/183 (54%), Gaps = 4/183 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + + +  + L+ ++ +S+ A  +N    SK++++  T  +      
Sbjct: 63  PASLTKLMTAYVAGQEINAGNITLDDEVVISRNAWAKNFPDSSKMFIEVNTSVSLSDLYR 122

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+ +S ND S A  E ++GSE  F  LM++ A K+ + NT + N  GL      +T  D
Sbjct: 123 GLVVQSGNDASVAIAEHVAGSESGFVSLMNSWAAKLELNNTAFTNPHGLDSDGLYSTPYD 182

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            A LG  + ++ P  Y  +S   F Y      N N LL ++  N+DG+KTGYT  +G+++
Sbjct: 183 IAKLGQAIIRDLPDIYPLYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYSL 242

Query: 253 VTS 255
            TS
Sbjct: 243 ATS 245


>gi|260587845|ref|ZP_05853758.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
           20583]
 gi|331083847|ref|ZP_08332956.1| hypothetical protein HMPREF0992_01880 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542110|gb|EEX22679.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
           20583]
 gi|330403272|gb|EGG82832.1| hypothetical protein HMPREF0992_01880 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 393

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 159/321 (49%), Gaps = 21/321 (6%)

Query: 30  LMGKILFLSIIMISMA-----SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKM 83
           ++G +LF S+ +  +       EL   P    ++++ +  ++   K  + R  PAS+TK+
Sbjct: 10  VVGILLFCSLFLTPLTVKAENEELITAPH--GVLMEASTGKIIYEKDMDTRVKPASITKI 67

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MTL +IF+ L+   LH+  ++  S  A +   S+++L+E    T E  I  ++  S ND 
Sbjct: 68  MTLILIFDELEKGNLHMEDEVVTSAYAKSMGGSQVFLEEGEKQTVETLIKCIVIASGNDA 127

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLR 202
           S A  E I+GSE +F   M+ +AK +GM+NT +++  GL +  N  T+A D AI+   L 
Sbjct: 128 SAAMAEHIAGSETEFVKRMNERAKGLGMENTNFEDCCGLTESDNHYTSAHDVAIMSRELI 187

Query: 203 KNFPQYYKYFSIRKFRYRNRI--------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
             +P+  +Y S+      +          +TN NKL+       G+KTG T  + + +  
Sbjct: 188 TRYPKILEYSSVWMENITHVTQKGNSEFGLTNTNKLIRSYDGCVGLKTGSTSVAKYCVSA 247

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLM 314
             + +   +++VVM  P  + R + A  ++   L   + K     +K+ L    ++  ++
Sbjct: 248 VAQREGITLISVVMTAPDYKVRFKDAAAMLN--LGFGSCKLYVDEQKEKLPQIPVEGGVL 305

Query: 315 IKKLKRTYS-QFKKIDAKAHS 334
            +K+   Y  +F+ +D +  S
Sbjct: 306 -EKVPCAYEKEFRYLDTEGAS 325


>gi|262402708|ref|ZP_06079269.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC586]
 gi|262351490|gb|EEZ00623.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC586]
          Length = 317

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 111/202 (54%), Gaps = 4/202 (1%)

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVS 144
           +I + ++   + LN  + +SK A  +N    SK++++  T          +I +S ND  
Sbjct: 1   MIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDAC 60

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  E ++G+E  F  LM+  A  +GM+N+ + N+ GL + +  +T  D A+LG  L ++
Sbjct: 61  VAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDNPDLYSTPYDLALLGQALIRD 120

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
            P+ Y  +S +KF Y      N N LL +K  N+DGIKTG+T  +G+N+V+S    +  +
Sbjct: 121 VPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRL 180

Query: 264 VAVVMGMPTSQERDQKALELIT 285
           VAVVMG      R  ++ +L++
Sbjct: 181 VAVVMGTDNENARKAESKKLLS 202


>gi|313887666|ref|ZP_07821348.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312846275|gb|EFR33654.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 456

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 123/238 (51%), Gaps = 15/238 (6%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTY 125
           + G+  DE R  AS +K+++++++ + +Q  K+ LN ++ + K AA    S   LKE   
Sbjct: 108 LEGYNLDEIRAMASTSKLVSIFVVLDKIQEGKISLNDEVEIDKEAAALTGSSFKLKEGDK 167

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-- 183
            T E+ I A +  S ND  TA G+ ++GS   F  +M++K   +G++N +  N +GL   
Sbjct: 168 VTVEKLIEASMVVSGNDAITALGKHVAGSTDAFVKMMNDKCHDLGLKNALMVNPTGLTNY 227

Query: 184 ---DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNID 238
              D N++TT R+  +L   L K  P+  KY +I K     RN I  N N +L  +  +D
Sbjct: 228 EILDYNKMTT-REMFMLASELIKFHPEILKYTTIAKLEDPGRNFIEYNTNPVLGIVPEVD 286

Query: 239 GIKTGYTRNSG-FNIVTSL------RYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           G+KTGYT  +G   I+T L      + KD  ++ +  G  +  ER      LIT   E
Sbjct: 287 GLKTGYTNAAGRCVILTGLEKGVDEKSKDMRLIGITTGSNSDFERFVACKRLITKGFE 344


>gi|75675657|ref|YP_318078.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
           winogradskyi Nb-255]
 gi|74420527|gb|ABA04726.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
           winogradskyi Nb-255]
          Length = 413

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 109/218 (50%), Gaps = 5/218 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-----KTAATQNPSKLYLKEKTYF 126
           DE R P+S+ K+MT  ++F  +   ++ L  +  +S     K  A    S ++    +  
Sbjct: 73  DELRAPSSMMKLMTAEVVFNAVTKGEIKLTDEYVISENTWRKGGAPSGGSTMFAAINSRI 132

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
             +  +   I +S ND   A  E I+G E  FA  M+ +A+++GM  + + N+SGL   +
Sbjct: 133 PVQDLLRGAIIQSGNDSCMALAEGIAGHESAFAEKMTARARELGMSRSTFANSSGLPHPD 192

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
              T R+ A L   +   +P +YK F  R+F +     +N N LL  M   DG+KTGYT+
Sbjct: 193 NKMTVRELAALARHIILTYPDFYKLFGEREFTWNKIRQSNRNALLAAMDGADGLKTGYTK 252

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
             G+ +V S+      ++ VV G+ ++  R   A +L+
Sbjct: 253 EGGYGLVGSVVQNGTRLIVVVNGLESADYRLTAARKLL 290


>gi|253682546|ref|ZP_04863343.1| D-alanyl-D-alanine carboxypeptidase DacF [Clostridium botulinum D
           str. 1873]
 gi|253562258|gb|EES91710.1| D-alanyl-D-alanine carboxypeptidase DacF [Clostridium botulinum D
           str. 1873]
          Length = 391

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 141/271 (52%), Gaps = 18/271 (6%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQM----TG---FKQD--EPRY 76
           RN  L+   L L+++ IS    ++ K    S+ ++     +    TG   +K++  E   
Sbjct: 4   RNKSLV--CLLLAVLFISQIFVVNVKAAEGSLDVEAKAGLLMEPSTGKIIYKKNVHEKFA 61

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGIL 133
           PAS+TK+MT+ +  E + S K+ L+  + VS+ A        S + L      T E  + 
Sbjct: 62  PASVTKIMTMLLTMEAIDSGKIKLSDTVVVSENAKKMGKNGSSSMLLDTGEVRTVEDLLK 121

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +   S ND +TA  E+I GSE +F  +M+ +A+++GM++T +KN  GL  +  +T+A D
Sbjct: 122 GVAIASGNDAATALAEYIGGSESRFVEMMNKRAQQLGMKDTTFKNCHGLSKEGHLTSAYD 181

Query: 194 QAILG--ILLRKNFPQYYKYF--SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
            +I+   +L  K   +Y   +  +I + R     + NHNKL+      DG+KTG+T  + 
Sbjct: 182 ISIMSCELLKHKKILKYSGTYMETISEGRKNPIELVNHNKLVRFYKGCDGLKTGFTNEAK 241

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           + I  +    +  ++A+++G PT + R++ A
Sbjct: 242 YCISATAVRNNIRMLAIIVGAPTYKVRNRDA 272


>gi|332981537|ref|YP_004462978.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis
           50-1 BON]
 gi|332699215|gb|AEE96156.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis
           50-1 BON]
          Length = 380

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/246 (33%), Positives = 127/246 (51%), Gaps = 17/246 (6%)

Query: 34  ILFLS-IIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYI 88
            +F+S  +MIS A  +   P+ S+    V++V   ++   K  + R P AS TK+MT   
Sbjct: 12  CVFMSPCLMISKALAVEDPPQISASVAAVMEVETGRVLYGKDADKRCPMASTTKIMTAIT 71

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
             E        L+  + VS  A+    S ++L+     T E  +  L+ RS ND + A  
Sbjct: 72  AIECGD-----LSDIVEVSDNASGVEGSSIWLEVGERLTLEDLLYGLMLRSGNDAAVAIA 126

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E I GS +KF  +M+NKAK+IG +NT + N  GL D++  TTA D A++     KN P +
Sbjct: 127 EHIGGSVEKFVDMMNNKAKEIGARNTHFVNPHGLPDEDHYTTAYDLALITAYAMKN-PVF 185

Query: 209 YKYFSI--RKFRYR----NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
            +  S   RK  +     +R + N NKLL K    +G+KTGYT+ +G  +V +       
Sbjct: 186 KQIVSTKYRKIPWEGHEWDRAMQNKNKLLWKYEGANGVKTGYTKEAGRCLVAAAYRNGMQ 245

Query: 263 IVAVVM 268
           +VAVV+
Sbjct: 246 LVAVVL 251


>gi|50084374|ref|YP_045884.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein
           [Acinetobacter sp. ADP1]
 gi|49530350|emb|CAG68062.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein
           [Acinetobacter sp. ADP1]
          Length = 436

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 113/220 (51%), Gaps = 11/220 (5%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLH---LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           R PASLTKMM  YI  + L++ KLH   + T  PV       + S++YLK     + +Q 
Sbjct: 56  RAPASLTKMMVAYITLKELKAGKLHKTDILTATPVVNMV-MWDESQMYLKPGEQISIDQL 114

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  LI  SAND +    E ISG+   F   M+ +A+ +GM++T + N +G+   +  +T+
Sbjct: 115 LAGLIVMSANDAAVTLAERISGNVPDFLKRMNQEAQALGMKDTYFSNPAGVTMPDHYSTS 174

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            D A+L   + K  P Y  Y  +  F Y+ R     N  L      DG+KTGYT+ +G+N
Sbjct: 175 HDLALLAQAIVKQTPDYLSYSKLPSFSYQQRFHRATNLALKIDPTADGLKTGYTKAAGYN 234

Query: 252 IVTSLR-------YKDDPIVAVVMGMPTSQERDQKALELI 284
           +  + +         D  ++ VV+G   + +R + A +L+
Sbjct: 235 LALTAKRPTMNVDIPDRRMIVVVLGTKNAHKRAEVANKLM 274


>gi|225182115|ref|ZP_03735543.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
           AHT 1]
 gi|225167202|gb|EEG76025.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
           AHT 1]
          Length = 382

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 110/216 (50%), Gaps = 3/216 (1%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN--PSKLYLKEKTYFTTE 129
           D P  PAS TK+MTL + FE L+   +  +    VS+ A +     S+++L      +  
Sbjct: 49  DTPLPPASTTKIMTLLLAFEALERGDIDWDDTTIVSRNAWSAEVVGSRMFLDLDQEVSIR 108

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
             I  +   SAND + A  E +SGSE+ F   M+ +A+++GM NT+++N SGL     + 
Sbjct: 109 DLIYGISIVSANDGTVALAEHLSGSEEAFVQQMNQRAQELGMTNTVFRNTSGLPADGHVM 168

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNS 248
           +ARD AIL   L  N P      +  +F + +    N N + L+     +G+KTG+T  S
Sbjct: 169 SARDIAILSRELIVNHPGILDIETQPEFTFNDIHQYNWNRRFLSSFEGANGLKTGWTDES 228

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            FN+  +       +++VVMG  +  ER     EL+
Sbjct: 229 RFNLAGAALRDGRQLISVVMGAESESERVAATSELL 264


>gi|92110365|emb|CAJ87634.1| putative penicillin binding protein 6b [Escherichia coli]
          Length = 335

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 115/210 (54%), Gaps = 7/210 (3%)

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILAL 135
           K+MT Y++   + S ++  +  + V + A A  NP     S ++LKE    +       L
Sbjct: 13  KLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGL 72

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++A D A
Sbjct: 73  IVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLA 132

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVT 254
           +L   +    P++Y  +S +   +      N N LL +K  N+DG+KTG+T  +GFN++ 
Sbjct: 133 VLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIA 192

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           S       ++AVVMG  +++ R+++A +L+
Sbjct: 193 SAVDGQRRLIAVVMGADSAKGREEEARKLL 222


>gi|222086014|ref|YP_002544546.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium
           radiobacter K84]
 gi|221723462|gb|ACM26618.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium
           radiobacter K84]
          Length = 403

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 110/214 (51%), Gaps = 10/214 (4%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYFTTEQG 131
           PASL K+MTL +IF+ ++  ++ L+T+ PVS+ A     A    S ++   K+       
Sbjct: 59  PASLAKLMTLDVIFDAIKRGEISLDTEYPVSENAWRTGGAPSRTSTMFAVLKSRVRVGDL 118

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI--- 188
           I  +  + AND      E IS SEK+FA  M+ +A++IGM   ++ N++GL D N     
Sbjct: 119 IQGIAVQQANDSCIVLAEGISISEKEFARRMTARAREIGMPRAVFTNSTGLPDANDQNGG 178

Query: 189 --TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
              + R+   L   L++N+P +YKY +   F +      N N LL     +DG+  G+  
Sbjct: 179 GKVSVRELVTLAQDLQQNYPDFYKYLAQPDFTWNKIFQRNRNPLLPLNIGVDGLGLGFAD 238

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
             G++IV S+      +   + G+ T +ER +++
Sbjct: 239 GEGYSIVASIERDGRRLFLALGGLKTDKERTEES 272


>gi|258512050|ref|YP_003185484.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478776|gb|ACV59095.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 290

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 113/208 (54%), Gaps = 12/208 (5%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE 129
           + DEP YPAS TK+MT  ++ ++LQ      +  + +S+TA+ Q   +L L+  T  T E
Sbjct: 62  RGDEPMYPASTTKLMTAILLVQHLQP-----DDPVYISETASRQPRVRLGLRPGTELTAE 116

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           Q +LALI +SANDV+    E I GS++ FA +M+ +A+ IG  +T +   +GLH     T
Sbjct: 117 QALLALIMKSANDVAYGIAETIGGSQEGFARMMNVEARLIGCTHTQFVTPNGLHADAHTT 176

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL----NKMHNIDGIKTGYT 245
           +A+D A++       +P+  +     +     + I N N+LL      +    G KTG+T
Sbjct: 177 SAKDIALI-TAKAITYPRIVRAMQTPQATIAGKTIRNGNRLLYSPPASIGEFIGGKTGFT 235

Query: 246 RNSGFNIVTSLR--YKDDPIVAVVMGMP 271
             + + + T++R  Y    +V+VV G P
Sbjct: 236 SRAMYCLATAVRRPYDGHILVSVVFGAP 263


>gi|226952491|ref|ZP_03822955.1| D-ala-D-ala-carboxypeptidase, penicillin-binding protein
           [Acinetobacter sp. ATCC 27244]
 gi|226836762|gb|EEH69145.1| D-ala-D-ala-carboxypeptidase, penicillin-binding protein
           [Acinetobacter sp. ATCC 27244]
          Length = 445

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 116/220 (52%), Gaps = 11/220 (5%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLH---LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           R PASLTKMM  Y+  + +++ KL    + T   V  T    + S++YLKE    + +Q 
Sbjct: 63  RAPASLTKMMVAYVALKEIEAGKLRKEDVTTATSVVNTV-MWDESQMYLKEGEQISVDQL 121

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  LI  SAND +    E ISGS  +F I M+ +A+ +GM++T + N +G+   +  +TA
Sbjct: 122 LAGLIVMSANDAALTLAEKISGSVPQFIIRMNQEAQALGMKDTHFSNPAGITMPDHYSTA 181

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            D  +L   +    P+Y  Y  +  F Y  R     N  L      DG+KTG+T+ +G+N
Sbjct: 182 ADLGLLAQAIVTKTPEYLYYSKMPSFSYNQRFHRATNLALKIDPTADGLKTGFTKAAGYN 241

Query: 252 I-VTSLRYKDDP------IVAVVMGMPTSQERDQKALELI 284
           + +T+ R   +P      ++ +V+G P +  R + A +L+
Sbjct: 242 LALTAERPTLNPHIDKRRLIVIVLGTPNAITRAEVANKLM 281


>gi|304405771|ref|ZP_07387429.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           curdlanolyticus YK9]
 gi|304345014|gb|EFM10850.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           curdlanolyticus YK9]
          Length = 437

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/247 (33%), Positives = 126/247 (51%), Gaps = 32/247 (12%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP--SKLYLKEKTYFTTE 129
           DE   PAS+TKMMT YI+ E +++ +L  +T +  S  AAT  P  S++YL E    T +
Sbjct: 75  DEALPPASMTKMMTEYIVLEEIKAGRLTWDTVVSTSAEAATVPPDGSQVYLAEGEKHTVK 134

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           +  +A+   SA+D + A    I GS   F   M+  A+K+G+ +  +   SGL +   I 
Sbjct: 135 ELYIAMAVGSASDATIALAVQIGGSTAGFVDKMNETAQKLGLTSAHFTGPSGLEETTVI- 193

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI---ITNHNKLLNKMHN---------- 236
           +ARD A L   +  N P++  Y SI ++++R R    + N+N +L    N          
Sbjct: 194 SARDMAKLASTIILNDPEFLTYSSIPRYKFRERDQGELINYNWMLGSNKNSEELKSFAYP 253

Query: 237 -IDGIKTGYTRNSGFNI-----VTSLRYKDDPIVAVVMGMPTSQERDQKALEL----ITS 286
            +DG+KTGY   +G+       V  LRY     V+VVM   T Q R ++  +L      S
Sbjct: 254 GVDGMKTGYIGAAGYCFTGTVEVNGLRY-----VSVVMNTKTKQARFRETAKLYDFGYAS 308

Query: 287 FLEKKTL 293
           F EKKT+
Sbjct: 309 F-EKKTI 314


>gi|169831388|ref|YP_001717370.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638232|gb|ACA59738.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 366

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 123/210 (58%), Gaps = 7/210 (3%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MT+ +  E L S K  L+  I  S+ AA    S++YL  +   +  + ++++ T
Sbjct: 46  ASVTKIMTMLLAVEALDSGKAKLDDIIVTSEHAAGMGGSQIYLAPQEKMSFREMLISVAT 105

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            SAND S A  E ++GSE+ F  +M+++A ++G ++T Y N +GL  +   + A DQA  
Sbjct: 106 GSANDASVAIAEHVAGSEEAFVQMMNDRAAELGAKHTHYVNPTGLPAEGHYSCAYDQA-- 163

Query: 198 GILLRK--NFPQYYKYFSIRKFRYRNRI--ITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            ++LR+   +P + +  +I+++  R     + N NKLL      D  KTG+T  + + + 
Sbjct: 164 -VILREALKYPLFREVSAIKEYDLRGGEFKLWNTNKLLWWYPGADAGKTGWTNEAKYCLA 222

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           +S++  +  ++AVV+G+P ++   +++++L
Sbjct: 223 SSVKKDNLRLIAVVLGVPETKGHFRESIKL 252


>gi|188584694|ref|YP_001916239.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349381|gb|ACB83651.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 416

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 113/210 (53%), Gaps = 19/210 (9%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           +PAS TK+MT  ++ E        L  Q+ VS+ A   + S +YL      TT   +  L
Sbjct: 70  HPASTTKIMTALLLIE-----NASLREQVVVSENAFGTDGSSMYLNLDEKITTRDLLYGL 124

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + RSAND + A  E+++GS + FA +M+++AK++G +NT +KN  GL ++N  TTA D  
Sbjct: 125 MVRSANDAAVAIAEYVAGSVENFADMMNSRAKELGAKNTNFKNPHGLTEENHKTTAYD-- 182

Query: 196 ILGILLRKNF--PQYYKYFSIRKFRY-------RNRIITNHNKLLNKMHNIDGIKTGYTR 246
            LG++ R+    P++    S R+           +R++ N N+LL       G+KTGYTR
Sbjct: 183 -LGVIAREALKNPKFRSVASTRRITLDWPEEEDEDRLLVNRNELLADYPGALGVKTGYTR 241

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           ++    V +       ++AVV+   TS+ R
Sbjct: 242 SANQTFVAAAERDGMTLIAVVLS--TSRNR 269


>gi|220932948|ref|YP_002509856.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Halothermothrix orenii H 168]
 gi|219994258|gb|ACL70861.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Halothermothrix orenii H 168]
          Length = 388

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 123/222 (55%), Gaps = 10/222 (4%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++I+ID    Q+   K  D+   PAS+TK+MTL +  E +    + L++ + VS+ A + 
Sbjct: 33  AAILIDAESGQVLYEKNADKKLPPASITKIMTLLLTMEEVDKGNISLDSMVTVSQLAESM 92

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S++YL   T       + A+   SAND   A  E ++G+E+ F   M+ +A+++GM+N
Sbjct: 93  GGSQIYLAADTRLKLRDLLKAVTIASANDACVAVAEAVAGTEENFVRWMNKRARELGMKN 152

Query: 174 TIYKNASGL-HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY------RNRIITN 226
           T + N +GL  D    TTARD AI+   L K+ PQ  K+ SI    Y      R  ++TN
Sbjct: 153 THFSNTTGLPTDGEHYTTARDVAIMARELIKH-PQVLKWASIW-VDYIDLPNGRKAMLTN 210

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            N+L+N    +DG+KTG+T  +G+ +  + R     +++V+M
Sbjct: 211 TNRLINDYPGMDGLKTGHTDAAGYCLAATARRNGMRLISVIM 252


>gi|262278233|ref|ZP_06056018.1| D-Ala-D-Ala-carboxypeptidase penicillin-binding protein
           [Acinetobacter calcoaceticus RUH2202]
 gi|262258584|gb|EEY77317.1| D-Ala-D-Ala-carboxypeptidase penicillin-binding protein
           [Acinetobacter calcoaceticus RUH2202]
          Length = 271

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 97/182 (53%), Gaps = 4/182 (2%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKL---HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           R PASLTKMM  YI  + +++ KL    + T  PV  +    + S++YLK     + +Q 
Sbjct: 56  RAPASLTKMMVAYIALKEIKAGKLKKEEIITATPVV-SVVQWDESQMYLKAGEQISVDQL 114

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  LI  SAND +    E ISG    F   M+ +A+ +GM++T + N  G+   +  TTA
Sbjct: 115 LAGLIVMSANDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPPGITMPDHYTTA 174

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            D ++LG  L K  P+Y  Y  +  F Y  R     N  L    ++DG+KTGYT+ +G+N
Sbjct: 175 HDLSLLGQALIKQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYN 234

Query: 252 IV 253
           + 
Sbjct: 235 LA 236


>gi|322383131|ref|ZP_08056958.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321152793|gb|EFX45419.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 414

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 146/280 (52%), Gaps = 28/280 (10%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTL 86
           +QL G  LF+S    + A+E+      S+I+++ N  Q+      D    PAS++KMMT 
Sbjct: 2   LQLFGMHLFVSSAAAADANEIPDLQAKSAILMEANTGQVLYENNADTLLPPASMSKMMTE 61

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y+I E ++  K+    ++PVSK AA+   S   L E    + +    A+   S+ND S A
Sbjct: 62  YLIMEAIKDGKIKWEDKVPVSKQAASAIGSGQLLAEGEQLSVKDMFYAISIYSSNDASVA 121

Query: 147 FGEFISGSEKKFAILMSNKAKKIGM-QNTIYKNASGL--HDKNQ----------ITTARD 193
             E++ G+E++FA +M+ KAK++G+ +   + NA+GL   D  Q          + TARD
Sbjct: 122 MAEYLGGTEEEFANMMNKKAKELGLSEGAHFINATGLTRADLGQYAPKNIEGETMMTARD 181

Query: 194 QAILGILLRKNFPQYYKY--FSIRKFRYRNRI-ITNHNKLL--NKMH---------NIDG 239
            AIL   +  + PQ  ++   + +K R  ++  + N N +L  NK +          +DG
Sbjct: 182 AAILARHIVLDHPQVLEFTKTTSKKLRETDKTPMINFNWMLEGNKGNINFKPYAYDGLDG 241

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           +KTG+T  +G+    + +  D  +++VVMG  +  +R Q+
Sbjct: 242 LKTGHTNEAGYCFTGTAQRGDMRLISVVMGTNSEPKRFQE 281


>gi|297617565|ref|YP_003702724.1| serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145402|gb|ADI02159.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 427

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 132/277 (47%), Gaps = 23/277 (8%)

Query: 16  TYPYGSIYIQRNIQLMGKILFLSIIM---ISMASELHAKPKYSSIVIDVNKNQMTGFKQD 72
           T P+G + I          L LS+     +++ASE       S ++++    ++   K  
Sbjct: 25  TIPFGVLLI---------CLVLSLGFDPKLALASENPQVQAPSCVLMEATTGKIVWAKNP 75

Query: 73  EPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           + R  PASLTK++T  I  E     +  LN +I V         +++YL E    T E  
Sbjct: 76  DQRMAPASLTKVLTALIALE-----RGDLNDKIKVGPNPPRVEGTRVYLVEGEEATLENL 130

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + A++  S ND + A  E   GS++ FA LM+ KA  +G +N+ + + +GL D N  TT+
Sbjct: 131 LYAMLLNSGNDAALAIAEHFGGSQQGFARLMNEKAAALGARNSHFVSPNGLSDPNHYTTS 190

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNR----IITNHNKLLNKMHNIDGIKTGYTRN 247
           RD A++     +N P + K  + +   +  +     + N NKLL K    DG+KTGYT  
Sbjct: 191 RDLAVIARAALQN-PDFRKIVATKTRPWNGQDWQTTLINQNKLLWKYPGADGVKTGYTTE 249

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +   ++ S        +AVV+  P     +Q A+ L+
Sbjct: 250 ARNTLIASATRNGQSFIAVVLDEPRGSVAEQDAIALL 286


>gi|114566158|ref|YP_753312.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114337093|gb|ABI67941.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 381

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 142/272 (52%), Gaps = 14/272 (5%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQDEPRY- 76
           +  +R+I  +  +L++ + +I+  + L A+       S +++D +  ++   K +  +  
Sbjct: 1   MCCRRSIAWL--VLWVMVFIIAAPTRLEAEVVEVKAESYVLMDADSGKVLLAKNEHKQLA 58

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MTL +  E L+  K+ L  ++  S+ A     S++YL+     + E  ++A+ 
Sbjct: 59  PASMTKLMTLILAMEALEEGKVTLKDKVVTSENAWKMGGSQIYLEPGEQMSYEDMLIAIA 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             SAND   A  E + G+ + F   M++KAK +G++NT + N+ GL      T+A D A+
Sbjct: 119 VGSANDACVAVAEHLEGTHQNFVDKMNHKAKMLGLKNTHFINSYGLSAPKHYTSAYDMAV 178

Query: 197 LGILLRKNF--PQYYKYFSIRKFRYRNRI--ITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           +G   R+    P+  +Y SI+++  R     + N NKLL      DG KTG+T  + + +
Sbjct: 179 IG---REALAHPKILEYSSIKEYDLRQGEFKLFNTNKLLWWYQGADGFKTGWTDEAKYCL 235

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
             + +     +++VVM  P      + +++L+
Sbjct: 236 AGTAKRDGLRLISVVMASPEKHGNFRDSMQLL 267


>gi|167946344|ref|ZP_02533418.1| Serine-type D-Ala-D-Ala carboxypeptidase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 228

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 91/150 (60%)

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +I +S ND   A  E I+GSE+ FA +M+N A+++GM  + + N++GL DK+  TT  D 
Sbjct: 1   MIIQSGNDACVALAEHIAGSEETFAEVMNNHARRLGMHASHFINSTGLPDKDHYTTPEDI 60

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
           A + +   + FP YYK++S + F +      N NKLL + + +DG+KTG+T  +G+ +V 
Sbjct: 61  AKVAMATIREFPDYYKWYSEKSFVFNKIKQHNRNKLLWRDNTVDGMKTGHTEAAGYCLVA 120

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           S + +   +++VVMG  + + R   +  L+
Sbjct: 121 SAQREQMRLISVVMGTKSEKARASASQALL 150


>gi|121535743|ref|ZP_01667545.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus
           carboxydivorans Nor1]
 gi|121305642|gb|EAX46582.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus
           carboxydivorans Nor1]
          Length = 378

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 114/221 (51%), Gaps = 13/221 (5%)

Query: 55  SSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+IVI+ +  ++   K  E  RYPAS TKMMTL +  E+      +LN  +  S  AA+ 
Sbjct: 31  SAIVIEASTGKVLYAKDAETKRYPASTTKMMTLIVALEHG-----NLNDIVTTSANAAST 85

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S L+L           +  ++  S ND + A  E ISGS +KFA LM+ KA  IG  N
Sbjct: 86  EGSSLWLAPGEQLKLLDMLYGVMLVSGNDATVAVAEHISGSVEKFARLMTEKAHAIGATN 145

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR------KFRYRNRIITNH 227
           T + N+SGL D N  TTA D A +     KN P + +  S +        +  +R + N 
Sbjct: 146 TNFTNSSGLPDPNHYTTAHDLAKIAAYGYKN-PFFAEIVSTKHKVIPWPGKDHDRDLYNE 204

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           NK+L      +G+KTGYT  +G  +V+  +  +  ++AVV+
Sbjct: 205 NKMLWLYDGANGVKTGYTEAAGPCLVSGAKRNNIQLIAVVL 245


>gi|126698888|ref|YP_001087785.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Clostridium difficile 630]
 gi|254974836|ref|ZP_05271308.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Clostridium difficile QCD-66c26]
 gi|255092224|ref|ZP_05321702.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Clostridium difficile CIP 107932]
 gi|255306248|ref|ZP_05350420.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Clostridium difficile ATCC 43255]
 gi|255313963|ref|ZP_05355546.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Clostridium difficile QCD-76w55]
 gi|255516643|ref|ZP_05384319.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Clostridium difficile QCD-97b34]
 gi|255649742|ref|ZP_05396644.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Clostridium difficile QCD-37x79]
 gi|260682898|ref|YP_003214183.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196]
 gi|260686496|ref|YP_003217629.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291]
 gi|306519851|ref|ZP_07406198.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-32g58]
 gi|115250325|emb|CAJ68147.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile]
 gi|260209061|emb|CBA62190.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Clostridium difficile CD196]
 gi|260212512|emb|CBE03449.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Clostridium difficile R20291]
          Length = 387

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 141/266 (53%), Gaps = 11/266 (4%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY--PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S+I++DV   Q+  +++D  +   PAS+TK+MT+ +I E L S K+ L+ ++ VS+TA++
Sbjct: 40  SAILMDVGSGQIL-YEKDAHKKLPPASVTKVMTMLLIVEALDSGKIKLDDEVQVSETASS 98

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S+++L+       +  +  +   SAND   A  E ++GS + F   M+ KAK++ M 
Sbjct: 99  MGGSQIFLEPGETQKVDTLLKGIAVASANDACVAMAEHLAGSVEGFVDRMNAKAKELNMN 158

Query: 173 NTIYKNASGLHDKNQITTARDQAILG-ILLRKNFPQYYKYFSIRKFRYRNRIIT----NH 227
           +T + N +GL   N  T+A D A++   LL+      Y    + K     + +T    N 
Sbjct: 159 DTHFANTNGLPVANHYTSAHDIALMSRELLKHEMISKYLTTWMDKVVVGKKQVTVGLANT 218

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT-S 286
           NKL+       G+KTG+T+ + + +  S +  +  +VA  +G  TS ER   A  L+   
Sbjct: 219 NKLIKHYQGATGVKTGFTQEAKYCLSASAKRGNTHLVAATLGAETSPERFNDASSLLNYG 278

Query: 287 FLEKKTLKHQQTHRKDNLSSTSLKKS 312
           F   +++K     + DN+++ +L K+
Sbjct: 279 FANYESVK--LCSKGDNIATLTLDKA 302


>gi|255100309|ref|ZP_05329286.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Clostridium difficile QCD-63q42]
          Length = 387

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 141/266 (53%), Gaps = 11/266 (4%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY--PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S+I++DV   Q+  +++D  +   PAS+TK+MT+ +I E L S K+ L+ ++ VS+TA++
Sbjct: 40  SAILMDVGSGQIL-YEKDAHKKLPPASVTKVMTMLLIVEALDSGKIKLDDEVQVSETASS 98

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S+++L+       +  +  +   SAND   A  E ++GS + F   M+ KAK++ M 
Sbjct: 99  MGGSQIFLEPGETQKVDTLLKGIAVASANDACVAMAEHLAGSVEGFVDRMNAKAKELNMN 158

Query: 173 NTIYKNASGLHDKNQITTARDQAILG-ILLRKNFPQYYKYFSIRKFRYRNRIIT----NH 227
           +T + N +GL   N  T+A D A++   LL+      Y    + K     + +T    N 
Sbjct: 159 DTHFANTNGLPVANHYTSAHDIALMSRELLKHEMISKYLTTWMDKVVVGKKQVTVGLANT 218

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT-S 286
           NKL+       G+KTG+T+ + + +  S +  +  +VA  +G  TS ER   A  L+   
Sbjct: 219 NKLIKHYQGATGVKTGFTQEAKYCLSASAKRGNTHLVAATLGAETSPERFNDASSLLNYG 278

Query: 287 FLEKKTLKHQQTHRKDNLSSTSLKKS 312
           F   +++K     + DN+++ +L K+
Sbjct: 279 FANYESVK--LCSKGDNIATLTLDKA 302


>gi|239827603|ref|YP_002950227.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70]
 gi|239807896|gb|ACS24961.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70]
          Length = 393

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 137/262 (52%), Gaps = 20/262 (7%)

Query: 35  LFLSIIMISMASELHAKPKY-------------SSIVIDVNKNQMTGFKQDEPRYP-ASL 80
           LF SI ++ +++ +HA+                S+I+I+ +   +   K    + P AS+
Sbjct: 10  LFASIFILPISANIHAEENKTNTRGIQLANDAKSAILIERDTGTVLYEKNAHKKLPPASM 69

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           TK+MT+ +I E +   +L    ++  S+ AA+   S+++L+     T ++ +  +   S 
Sbjct: 70  TKIMTMLLIMEAIDKGELSYKEKVRASEYAASMGGSQIFLEPGEEMTVDELLRGIAIGSG 129

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND S A  E I+GSE+ F  +M+ KAK++G++NT ++N++GL  +   ++A D A++   
Sbjct: 130 NDASVAMAERIAGSEEAFVEMMNKKAKELGLKNTSFQNSTGLPAEGHYSSAYDMAMMARE 189

Query: 201 LRKNFPQYYKYFSIRKFRYRNR-----IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           L K +    KY  I +   R        + N N+L+     +DG+KTG+T  + + +  +
Sbjct: 190 LLK-YEDITKYTGIYEDYLRENTDKKFWLVNTNRLVKFYPGVDGLKTGFTNEAKYCLTAT 248

Query: 256 LRYKDDPIVAVVMGMPTSQERD 277
            +     ++AVV G  T ++R+
Sbjct: 249 AKKNGMRVIAVVFGASTPKDRN 270


>gi|331269461|ref|YP_004395953.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum
           BKT015925]
 gi|329126011|gb|AEB75956.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum
           BKT015925]
          Length = 379

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 114/211 (54%), Gaps = 7/211 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGIL 133
           PAS+TK+MT+ +  E + S K+ L   + VS+ A        S + L      T E  + 
Sbjct: 50  PASVTKIMTMLLTMEAIDSGKIKLTDTVVVSENAKKMGKNGSSSMLLDTGEVRTVEDLLK 109

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +   S ND +TA  E+I GSE  F  +M+ +A+++GM++T +KN  GL  +  +T+A D
Sbjct: 110 GVAIASGNDAATALAEYIGGSESSFVEMMNKRAQQLGMKDTTFKNCHGLSKEGHLTSAYD 169

Query: 194 QAILG--ILLRKNFPQYYKYF--SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
            +I+   +L  K   +Y   +  +I + R +   + NHNKL+      DG+KTG+T  + 
Sbjct: 170 ISIMSRELLKHKKILKYSGTYMETISEGRKKPIELVNHNKLVRFYKGCDGLKTGFTNEAK 229

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           + I  +    +  ++A+++G PT + R++ A
Sbjct: 230 YCISATAVRNNIRMLAIIVGAPTYKVRNRDA 260


>gi|291545871|emb|CBL18979.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. SR1/5]
          Length = 395

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 113/231 (48%), Gaps = 9/231 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D  R PAS+TK+MTL +IF+ ++   LHL   I  S  A +   S+++L+E    T E  
Sbjct: 61  DTRRSPASITKIMTLILIFDAIREGTLHLEDSITTSAYARSMGGSQVFLEEGEKQTAETM 120

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ-ITT 190
           I  ++  S ND S A  E ++G+E+ F   M+ +AK +GM+NT + +  GL +  +  TT
Sbjct: 121 IKCIVIASGNDASVAMAEHVAGTEQAFVERMNERAKDLGMKNTHFVDCCGLTESQEHYTT 180

Query: 191 ARDQAILGILLRKNFPQYYKYFS--IRKFRYRNR------IITNHNKLLNKMHNIDGIKT 242
             D A++   L   +P+   Y S  I    +  R       +TN NKLL       G+KT
Sbjct: 181 PYDIALMSRELISRYPEVLTYSSVWIEDITHVTRKGSSKFTLTNTNKLLRSYEGCMGLKT 240

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
           G T  + + +          ++A VM  P  + R + A  L+     K TL
Sbjct: 241 GSTSIAKYCLSAVAERNGITLIASVMAAPDPKTRFRDAAALLNYGFSKCTL 291


>gi|310658666|ref|YP_003936387.1| serine-type d-ala-d-ala carboxypeptidase [Clostridium sticklandii
           DSM 519]
 gi|308825444|emb|CBH21482.1| Serine-type D-Ala-D-Ala carboxypeptidase precursor [Clostridium
           sticklandii]
          Length = 433

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 146/312 (46%), Gaps = 40/312 (12%)

Query: 12  KTFLTYPYGSIYIQRNIQLMGKILFLSI-IMISMASELHAK-PKYSSIVIDVNKNQMTGF 69
           KT L + YG I           ILFL++ I  S AS +       ++I+I+++  ++   
Sbjct: 2   KTKLCFVYGII----------TILFLNLFISSSFASPIEPDISAEAAILIEIDSGEILYE 51

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           K  + P YPAS TK+MT  +  E+L     +L  +I V +     + S +YL     FT 
Sbjct: 52  KNANAPMYPASTTKIMTALLALEHL-----NLEDKITVPEDMGPADGSAMYLLPGEVFTV 106

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            + +  L+ +SAND +      ISG  + FA LM+ +AK IG  NT + N +GLHD +  
Sbjct: 107 RELLDGLLVKSANDAAVLLARTISGDIQSFATLMNQRAKDIGCANTSFANPNGLHDPSHT 166

Query: 189 TTARDQAILGILLRKN--FPQYYKYFSI-----------RKFRYRNR-------IITNHN 228
            +A D A++     KN  F +     ++           R FR  NR       II N+ 
Sbjct: 167 ISAHDMALIAREAMKNATFRELVSQVNVTLNETPQTPEKRYFRNTNRFLWSTSKIIYNNE 226

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF- 287
            +  K   +DGIKTGYT  +G  +V+S +  D  +++VV             L L   F 
Sbjct: 227 YIPIKYEVVDGIKTGYTGEAGNCLVSSGKKNDIRVISVVFKASGYDVYRDSRLLLDYGFD 286

Query: 288 -LEKKTLKHQQT 298
             EKKTL  + T
Sbjct: 287 NFEKKTLIKKDT 298


>gi|240850634|ref|YP_002972034.1| penicillin-binding protein [Bartonella grahamii as4aup]
 gi|240267757|gb|ACS51345.1| penicillin-binding protein [Bartonella grahamii as4aup]
          Length = 387

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 132/274 (48%), Gaps = 11/274 (4%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKT 124
           + D P +PASL K+MT+ ++F +L+   L    +  VS+ A     A    + ++ K KT
Sbjct: 48  QSDIPFFPASLAKLMTVEVVFHHLKEGLLKSTQKFKVSENAWRKGGAPSGTTTMFAKIKT 107

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
             +    +  LI  + ND +    E ISG E  FA LM+ +AK +G+  + + NA+GL +
Sbjct: 108 EISVSDLLRGLIIMNGNDAAIILAEGISGHEAHFAKLMNQRAKIVGLSQSHFVNATGLPE 167

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGY 244
           + Q  T RD  IL   + + +P YY  +    F + N    N N L++K   ++G   GY
Sbjct: 168 EGQFVTVRDMIILARHIVQEYPDYYALYREPHFTWNNIFQRNKNPLISKEIGVEGFGFGY 227

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ---ERDQKALELITSFLEKKTL--KHQQTH 299
           +   GF++V ++      +   + G+   +   +  ++ L+   +  + KT+  K +   
Sbjct: 228 SGKEGFSMVATISKNHRRLFLAINGLQDGKKYTKEIERILQWGMTAFDLKTIFTKEEAVG 287

Query: 300 RKDNLSSTSLKKSLMIKK-LKRTYSQFKKIDAKA 332
           R      T     L++KK +    S  KK++ KA
Sbjct: 288 RASVYGGTQNFVPLIVKKPISFMLSNEKKVNVKA 321


>gi|103486742|ref|YP_616303.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingopyxis alaskensis
           RB2256]
 gi|98976819|gb|ABF52970.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingopyxis alaskensis
           RB2256]
          Length = 273

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 114/221 (51%), Gaps = 13/221 (5%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-----KTAATQNPSKLYLKEKTYFTTEQG 131
           PAS+ K+MT Y++ + L++++L  +T   VS     K  ++   S ++L      + +  
Sbjct: 22  PASMAKVMTAYVVLDLLKTRELRRDTTFTVSDAVWRKWNSSTGGSTMFLSPGEKLSVDDL 81

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI-TT 190
           +  LIT SAND +    E I GSE+ F   M+  A  IGM ++ +   +G  D      +
Sbjct: 82  LKGLITVSANDAAAVLAEGIDGSEEAFVRRMNKVAADIGMASSHFGTPNGWPDGGVTKVS 141

Query: 191 ARDQAILGILLRKNFPQ-YYKYFSIRKFRY------RNRIITNHNKLLNKMHNIDGIKTG 243
           A D   L   L ++ P  Y +YFSI K ++      R  +  N N +L+++   DG+KTG
Sbjct: 142 AADLITLADRLIRDHPDGYARYFSIPKLQHGVAPDGRPIVQPNRNPILDRVDGADGLKTG 201

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +TR +G+  + S       ++ VV G+P++  R ++A  L+
Sbjct: 202 HTREAGYCFLGSAERDGRRLIMVVAGLPSANARREEAQRLM 242


>gi|261409755|ref|YP_003245996.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           sp. Y412MC10]
 gi|261286218|gb|ACX68189.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           sp. Y412MC10]
          Length = 336

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 121/242 (50%), Gaps = 20/242 (8%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+I  +  + +     D P  PAS++KMMT  ++ + ++S +   +  +PVS+ AA  
Sbjct: 68  SAILIHADTGRVLYAMHADLPLPPASMSKMMTELLVLDAVRSGQHAWDENVPVSRYAAEV 127

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S + + E   +T +Q   ALI  SAND + A  E + GSE +F   M+ +AK+IG+ +
Sbjct: 128 PGSAIGMHEGERYTLKQLFEALIIHSANDAAVAIAEHLGGSEARFVETMNARAKEIGLSD 187

Query: 174 -TIYKNASGL------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
            T++ NASGL             + + + TARD A+L   L    P   +  S R     
Sbjct: 188 RTVFANASGLPAADLVPFAEAASEGDTVMTARDSAMLARWLVNKHPDLLEVTSQRDLPVP 247

Query: 221 NRIITNHNK---LLNKMH---NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
            + ++ H     L  + H     DG KTGYT ++G+    +     + +++VVMG   + 
Sbjct: 248 QKELSLHTTNLMLPGEPHAYQGNDGFKTGYTASAGYCFTGTASRGGNRLISVVMGTGDAD 307

Query: 275 ER 276
           +R
Sbjct: 308 QR 309


>gi|253576351|ref|ZP_04853681.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844244|gb|EES72262.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 396

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 128/235 (54%), Gaps = 5/235 (2%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+++ID +   +   K+   + P AS+TK+MT+ +  E + +  L L  ++  S+
Sbjct: 40  AENALSAVLIDADTGTVIYEKKSHEKLPPASITKIMTMLLTMEAIDNGTLKLTDKVTTSE 99

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T ++ +  +   S ND S A  E I+GSEK F  +M+ +A++
Sbjct: 100 YAASMGGSQIFLEPGETMTVDELLKGVAMASGNDASVALAEKIAGSEKAFVKMMNERAQQ 159

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG--ILLRKNFPQYYKYFS--IRKFRYRNRII 224
           +G+++T + N +GL   +  ++A D AI+   +L  +   +Y   +   +R+   +   +
Sbjct: 160 LGLKDTHFANCNGLPVADHYSSAYDIAIMSRELLKHEEITKYTGAYQDYLRQGTEKPFWL 219

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            N NKL+      DG+KTGYT  + F +  + +     ++AVV+G P ++ R+ +
Sbjct: 220 VNTNKLVRFYSGADGLKTGYTSEAKFCLAATAKRDGLRLIAVVLGEPNTKTRNSE 274


>gi|329923410|ref|ZP_08278892.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5]
 gi|328941302|gb|EGG37596.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5]
          Length = 336

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 121/242 (50%), Gaps = 20/242 (8%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+I  +  + +     D P  PAS++KMMT  ++ E ++S +   +  +PVS+ AA  
Sbjct: 68  SAILIHADTGRVLYAMHADLPLPPASMSKMMTELLVLEAVRSGQHAWDENVPVSRYAAEV 127

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S + + E   +T +Q   ALI  SAND + A  E + GSE +F   M+ +AK+IG+ +
Sbjct: 128 PGSAIGMHEGERYTLKQLFEALIIHSANDAAVAIAEHLGGSEARFVESMNIRAKEIGLSD 187

Query: 174 -TIYKNASGL------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
            T++ NASGL             + + + TARD A+L   L    P   +  S R     
Sbjct: 188 RTVFANASGLPAADLVPFAEAASEGDTVMTARDSAMLARWLVNKHPDLLEVTSQRDLPVP 247

Query: 221 NRIITNHNK---LLNKMH---NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
            + ++ H     L  + H     DG KTGYT ++G+    +     + +++VVMG   + 
Sbjct: 248 QKELSLHTTNLMLPGEPHAYQGNDGFKTGYTSSAGYCFTGTASRGGNRLISVVMGTGDAD 307

Query: 275 ER 276
           +R
Sbjct: 308 QR 309


>gi|302392458|ref|YP_003828278.1| serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum
           DSM 5501]
 gi|302204535|gb|ADL13213.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum
           DSM 5501]
          Length = 397

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 109/216 (50%), Gaps = 7/216 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK MTL +  E +   K +L+  +  S+ AA    S+++L+       E+ I A+ 
Sbjct: 62  PASITKTMTLLLTMEAIDEGKANLDEAVTTSEYAAGMGGSQIWLEPGEEMKLEEMIKAIA 121

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL-----HDKNQITTA 191
             SAND   A  E + G+E+ F   M+ KA ++G+ +T + N +GL       +   T+A
Sbjct: 122 IVSANDACVAVAEHLYGTEEVFVNAMNEKADELGLDDTHFVNTNGLPVEDSDKRGNYTSA 181

Query: 192 RDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
            D  ++   L   +PQ   Y    I   R  +  + N N L+      DG+KTG+T  +G
Sbjct: 182 HDVGVMSRELVTKYPQVLDYTKIWIDHLRDGDSFLRNTNNLVRFYKGADGLKTGHTSQAG 241

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           F +V +   K    +AVVM   TS  R ++A EL++
Sbjct: 242 FGVVATAERKGLRFIAVVMKEETSDTRFKEAGELLS 277


>gi|160946179|ref|ZP_02093390.1| hypothetical protein PEPMIC_00141 [Parvimonas micra ATCC 33270]
 gi|158447702|gb|EDP24697.1| hypothetical protein PEPMIC_00141 [Parvimonas micra ATCC 33270]
          Length = 391

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 116/220 (52%), Gaps = 18/220 (8%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DEP   AS++K+MT Y++ E +   KL +  ++ +S  A+ +  S L LK     + +  
Sbjct: 54  DEPLSIASISKLMTYYLVKEKIAEGKLKMEDKVKISINASREEGSSLNLKAGEQISIKDL 113

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT-- 189
           +  L+  S ND + A  E ++ SE KF  +M+ KAK++G+QN  + NASGL    Q    
Sbjct: 114 LDGLMVVSGNDSAVALAEVVAESESKFVTMMNEKAKELGLQNATFTNASGLTKNGQDNKM 173

Query: 190 TARDQAILGILLRKNFPQYYKYFSI-------RKFRYRNRIITNHNKLLNKMHNIDGIKT 242
           + RD   L   + + +P+  +Y          R F+  + I      L+ ++  +DG+KT
Sbjct: 174 STRDIFTLSKAIIEKYPEVLEYAKTTVLEQPSRNFKKESTI-----PLVGQVEGVDGLKT 228

Query: 243 GYTRNSGFNIVTSLRYKDDP----IVAVVMGMPTSQERDQ 278
           G+T  +G+ +V++++ K       +++V+MG  T  +R Q
Sbjct: 229 GHTDEAGYCLVSTMKIKKGETEFRVISVLMGAKTKADRAQ 268


>gi|295108761|emb|CBL22714.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162]
          Length = 412

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/243 (33%), Positives = 128/243 (52%), Gaps = 22/243 (9%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-- 111
           S+I++D+    +   K  D+ +YPAS+TK+MT       L  + L L+ +  ++++AA  
Sbjct: 73  SAILVDMLSGTILYSKNADKAQYPASITKIMT-----GLLGCENLDLSAKFTMTESAARS 127

Query: 112 --TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
               N S +Y      FT EQ ++A++ +SAN+++ A  E  SGS KKF   M+ KA+++
Sbjct: 128 ITESNSSSIYADTGEEFTVEQALMAVMLQSANEMTLAVAELTSGSTKKFVEQMNLKARQL 187

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF-------PQYYKYFSIRKFRYRNR 222
           G  NT + N +GL D+   TTA D A +      NF         YY+     KF    R
Sbjct: 188 GCTNTHFNNPNGLPDETHYTTAADMAKIARAAWFNFTFRKFVTTGYYEIPPTNKFA-ETR 246

Query: 223 IITNHNKLLN-KMHNIDGI---KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
            + NH+K+++ + +  DG+   KTGYT  +G  +VT  +  +  +VAVVM        D 
Sbjct: 247 YLLNHHKMMSGQTYAYDGVLGGKTGYTEAAGNTLVTYAKNDNTYLVAVVMQSVNGAYSDT 306

Query: 279 KAL 281
           KAL
Sbjct: 307 KAL 309


>gi|118443387|ref|YP_878099.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT]
 gi|118133843|gb|ABK60887.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT]
          Length = 392

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 115/215 (53%), Gaps = 7/215 (3%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTE 129
           E   PAS+TK+MT+ +  E + S K+ L   + VS+ A        S + L      T E
Sbjct: 59  EKFAPASVTKIMTMLLTMEAVDSGKIKLTDTVVVSENAKKMGGNGSSSMLLDTGEVRTVE 118

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
             +  +   S ND +TA  E+I GSE  F  +M+ +A+++GM++T +KN  GL  +  +T
Sbjct: 119 DLLKGVAIASGNDAATALAEYIGGSESSFVEMMNKRAQELGMKDTTFKNCHGLSKEGHLT 178

Query: 190 TARDQAILG--ILLRKNFPQYYKYF--SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
           +A D +I+   +L  K   +Y   +  +I + R +   + NHNKL+      DG+KTG+T
Sbjct: 179 SAYDISIMSRELLKHKKILKYSGTYMETISEGRKQPIELVNHNKLVRFYKGCDGLKTGFT 238

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
             + + I  +    +  ++A+++G PT + R++ A
Sbjct: 239 NEAKYCISATAVRDNIRMLAIIVGAPTYKIRNRDA 273


>gi|254469200|ref|ZP_05082605.1| D-alanyl-D-alanine carboxypeptidase, putative [Pseudovibrio sp.
           JE062]
 gi|211961035|gb|EEA96230.1| D-alanyl-D-alanine carboxypeptidase, putative [Pseudovibrio sp.
           JE062]
          Length = 372

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 133/280 (47%), Gaps = 11/280 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           F SI+  S A  +  K K +++    NK+ +          PA+LTK+MT   + + + +
Sbjct: 3   FCSILAASPAQAVEIKAKAATLYDFTNKSLVFSKNSQVLMAPANLTKLMTAVTVQQAIHA 62

Query: 96  KKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             +   T   VS+ A     A    + ++ +  +  +    +  LI  SAND +    E 
Sbjct: 63  GDITPQTMFKVSEHAWRTGGAPARVTTMFARLNSSVSVNDLMYGLIVHSANDAAIILAEG 122

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           ++GSE+ FA  M+  AK IGM+N+ + N +G  D+N  TT  D  +L   + ++ P+ + 
Sbjct: 123 LAGSEENFAQEMNKLAKSIGMENSNFTNPTGFPDENHKTTLEDLTVLAAYVLEHEPELHS 182

Query: 211 YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
            +++ +F +      N N L+  +  +DG   G++   GF  + +L       VA +   
Sbjct: 183 VYAMDRFTWNKITQRNKNPLIRDIQGLDGFGAGFSEREGFAALGTLDSNGHRYVAAIAAS 242

Query: 271 PTSQER--DQKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
           PT Q+R  D K L L+ +F     LK QQ  RK  L S +
Sbjct: 243 PTLQDRVQDMKTL-LLPTF---SGLKLQQLFRKGELISDA 278


>gi|168186263|ref|ZP_02620898.1| penicillin-binding protein DacF [Clostridium botulinum C str.
           Eklund]
 gi|169295681|gb|EDS77814.1| penicillin-binding protein DacF [Clostridium botulinum C str.
           Eklund]
          Length = 392

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 115/215 (53%), Gaps = 7/215 (3%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTE 129
           E   PAS+TK+MT+ +  E + S K+ L+  + VS+ A        S + L      T E
Sbjct: 59  EKFAPASVTKIMTMLLTMEAVDSGKIKLSDTVVVSENAKKMGGNGSSSMLLDTGEVRTVE 118

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
             +  +   S ND +TA  E+I GSE  F  +M+ +A+++GM++T +KN  GL     +T
Sbjct: 119 DLLKGVAIASGNDAATALAEYIGGSESSFVEMMNKRAQELGMKDTTFKNCHGLSADGHLT 178

Query: 190 TARDQAILG--ILLRKNFPQYYKYF--SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
           +A D +I+   +L  K   +Y   +  +I + R +   + NHNKL+      DG+KTG+T
Sbjct: 179 SAYDISIMSRELLKHKKILKYSGTYMETISEGRKQPIELVNHNKLVRFYKGCDGLKTGFT 238

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
             + + I  +    +  ++A+++G PT + R++ A
Sbjct: 239 NEAKYCISATAVKNNIRMLAIIVGAPTYKIRNRDA 273


>gi|331003847|ref|ZP_08327339.1| hypothetical protein HMPREF0491_02201 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412039|gb|EGG91436.1| hypothetical protein HMPREF0491_02201 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 455

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 142/275 (51%), Gaps = 33/275 (12%)

Query: 32  GKILFLSIIMISMASELHAKPKYSSIVIDVNK------NQMTG---FKQDEPR--YPASL 80
           G  + LSI MIS +SE +A   +++I  D+        N  TG   ++++  R  YPAS+
Sbjct: 10  GLSILLSIGMISFSSE-YAMVTHAAIPPDIKSQGAAVYNANTGEFLYEKNGDRQFYPASI 68

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALIT 137
           TK+MT  I+ E     + +LN  +  S+ A T      ++L + E    +    +   + 
Sbjct: 69  TKIMTTLIVLE-----QANLNDTVVFSRAATTNLEAGATRLGVSEGDKMSVRDALYGTML 123

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            SAN+VS    E++ GS   F+ +M+ +A++IG  NT + N SGL+++N +TTA+D A +
Sbjct: 124 ASANEVSNGLAEYVGGSIAGFSSMMNARAREIGATNTNFVNPSGLNNQNHVTTAKDMARI 183

Query: 198 GILLRKNFPQY--------YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI---KTGYTR 246
                +N P +        Y + +I K +     I  H++++N   N  G+   KTGYTR
Sbjct: 184 AAEAFRN-PDFRVIAGTKVYNFPAI-KTKAEVTPIKMHHRMVNGSDNYPGVIGGKTGYTR 241

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           ++G  +VT        ++ VV+  P++   D +AL
Sbjct: 242 SAGNTLVTCAERNGVRLIVVVLKSPSTHYADTRAL 276


>gi|242239720|ref|YP_002987901.1| beta-lactamase [Dickeya dadantii Ech703]
 gi|242131777|gb|ACS86079.1| Beta-lactamase [Dickeya dadantii Ech703]
          Length = 401

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 131/265 (49%), Gaps = 14/265 (5%)

Query: 43  SMASELHAKPKYSS---IVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKL 98
           S A +  A P+  +   I++D    ++      DE   PASLTK+MT Y++ + +++ K+
Sbjct: 27  SYAEQPSAPPQIDAKAFILMDATSGRVLAELNADERLDPASLTKIMTSYVVGQAIKAGKI 86

Query: 99  HLNTQIPVSKTA-ATQNPSK-----LYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
             + ++ V   A A  NPS      ++LK             ++ +S ND S A  ++++
Sbjct: 87  KPDDRVTVGSDAWANGNPSLRGSSLMFLKPGDQILVSDLNKGMVIQSGNDASIALADYVA 146

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           GS++ F  LM+  A  +G+ N+ +    GL    Q +TARD + L   L ++ P  Y   
Sbjct: 147 GSQQAFISLMNQYAASLGLSNSHFLTVHGLDTPGQYSTARDMSRLTQALIRDLPDEYALH 206

Query: 213 SIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           S + F +      N N+LL +    +DG+KTG+T  +G+N+V+S       ++AVV+G  
Sbjct: 207 SEKAFTFNKINQPNRNRLLWSATLRVDGVKTGFTHGAGYNLVSSAVEGGTRLIAVVLGSS 266

Query: 272 TSQER---DQKALELITSFLEKKTL 293
           +   R    +K L     F E  T+
Sbjct: 267 SDAIRFRESEKLLAWGFRFFETVTV 291


>gi|300986937|ref|ZP_07177913.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1]
 gi|300407823|gb|EFJ91361.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1]
 gi|307626443|gb|ADN70747.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli UM146]
 gi|315295235|gb|EFU54570.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           153-1]
          Length = 321

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 113/208 (54%), Gaps = 7/208 (3%)

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALIT 137
           MT Y++   + S ++  +  + V + A A  NP     S ++LKE    +       LI 
Sbjct: 1   MTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIV 60

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++A D A+L
Sbjct: 61  DSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVL 120

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSL 256
              +    P++Y  +S +   +      N N LL +K  N+DG+KTG+T  +GFN++ S 
Sbjct: 121 SRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASA 180

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELI 284
                 ++AVVMG  +++ R+++A +L+
Sbjct: 181 VDGQRRLIAVVMGADSAKGREEEARKLL 208


>gi|255655303|ref|ZP_05400712.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Clostridium difficile QCD-23m63]
 gi|296451287|ref|ZP_06893027.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile
           NAP08]
 gi|296880361|ref|ZP_06904324.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile
           NAP07]
 gi|296259893|gb|EFH06748.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile
           NAP08]
 gi|296428602|gb|EFH14486.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile
           NAP07]
          Length = 387

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 140/266 (52%), Gaps = 11/266 (4%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY--PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S+I++DV   Q+  +++D  +   PAS+TK+MT+ +I E L S  + L+ ++ VS+TA++
Sbjct: 40  SAILMDVGSGQIL-YEKDAHKKLPPASVTKVMTMLLIVEALDSGDIKLDDEVQVSETASS 98

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S+++L+       +  +  +   SAND   A  E ++GS + F   M+ KAK++ M 
Sbjct: 99  MGGSQIFLEPGETQKVDTLLKGIAVASANDACVAMAEHLAGSVEGFVDRMNAKAKELNMN 158

Query: 173 NTIYKNASGLHDKNQITTARDQAILG-ILLRKNFPQYYKYFSIRKFRYRNRIIT----NH 227
           +T + N +GL   N  T+A D A++   LL+      Y    + K     + +T    N 
Sbjct: 159 DTHFANTNGLPVANHYTSAHDIALMSRELLKHEMISKYLTTWMDKVVVGKKQVTVGLANT 218

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT-S 286
           NKL+       G+KTG+T+ + + +  S +  +  +VA  +G  TS ER   A  L+   
Sbjct: 219 NKLIKHYQGATGVKTGFTQEAKYCLSASAKRGNTHLVAATLGAETSPERFNDASSLLNYG 278

Query: 287 FLEKKTLKHQQTHRKDNLSSTSLKKS 312
           F   +++K     + DN+++ +L K+
Sbjct: 279 FANYESVK--LCSKGDNIATLTLDKA 302


>gi|15965358|ref|NP_385711.1| putative penicillin-binding precursor (D-alanyl-D-alanine
           carboxypeptidase fraction A) transmembrane protein
           [Sinorhizobium meliloti 1021]
 gi|307312733|ref|ZP_07592364.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           BL225C]
 gi|307317217|ref|ZP_07596658.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           AK83]
 gi|15074538|emb|CAC46184.1| Putative penicillin-binding precursor (D-alanyl-D-alanine
           carboxypeptidase fraction A) transmembrane protein
           [Sinorhizobium meliloti 1021]
 gi|306897305|gb|EFN28050.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           AK83]
 gi|306899458|gb|EFN30090.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           BL225C]
          Length = 384

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 114/230 (49%), Gaps = 10/230 (4%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTY 125
           +D P  PASL K+M + ++FE L   +L   T   VS+ A     A    S ++   K+ 
Sbjct: 50  EDAPVPPASLAKLMAMEVVFEALDKGELTPETSFEVSEHAWRTGGAPSGTSTMFAAIKSR 109

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL-HD 184
                 I     + AND      E ++GSE  FA LM+ +A+ +G+    +KNA+GL H 
Sbjct: 110 IRVADLIQGATVQLANDACIVLAEGMAGSEAAFAELMTKRARDLGLPVATFKNATGLPHP 169

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGY 244
           +N++T  R+   L   L +  P YY+ +S  +F +   +  N N L+     +DG+ TG+
Sbjct: 170 ENKVTM-RELVALTRHLYEAHPDYYRLYSQPEFEWNKILQRNKNPLIAANVGVDGLATGF 228

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKK 291
               GF++  S++  D  +   + G+ + +ER    ++ L+   +  EK+
Sbjct: 229 AEGFGFSLAVSMQRGDRRVYLAMGGLESEKERIEESRRVLDWAMTAFEKR 278


>gi|296133697|ref|YP_003640944.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola sp. JR]
 gi|296032275|gb|ADG83043.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola potens JR]
          Length = 413

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 126/254 (49%), Gaps = 26/254 (10%)

Query: 34  ILFLSIIMISMASELHAKPKYS---------SIVIDVNKNQMTGFKQDEPRYP-ASLTKM 83
           IL +   +I++       P Y+          ++ID    Q+   K  + R P AS TK+
Sbjct: 10  ILLVVFFVITVVGGPVIAPVYAQEPGIVGKAGVLIDARSGQVLYAKNPDLRLPPASTTKI 69

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           +T+ I  E     + ++N ++ VSK A TQ  S +YL      T E  +  ++  S ND 
Sbjct: 70  LTVAIALE-----EGNVNDKVTVSKNAVTQEGSSIYLTAGETLTLEDLLYGVLLSSGNDA 124

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG----- 198
           + A  E I+GS   F  LM+ KAK+ G  N+ + N +GL +    TTARD A++      
Sbjct: 125 AVAVAEHIAGSVPAFVKLMNKKAKEWGATNSNFCNPNGLPNDEHYTTARDLAMIAKHAME 184

Query: 199 -ILLRKNFPQYYKYFSIRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
             L R+      K   I++    N  R+I NHNKLL +    +GIKTGYTR +   +V+S
Sbjct: 185 LPLFREMAATKVK--EIKRADPANFFRLI-NHNKLLWRYEGANGIKTGYTRVAQQCLVSS 241

Query: 256 LRYKDDPIVAVVMG 269
            +  D   +AVV+G
Sbjct: 242 AKRGDQEFIAVVLG 255


>gi|167813984|ref|ZP_02445664.1| penicillin-binding protein 6 [Burkholderia pseudomallei 91]
          Length = 306

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 103/179 (57%), Gaps = 7/179 (3%)

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+ +A+++GM+
Sbjct: 12  RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGMK 71

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           NT + + +G+ D N  TTA D A L   L +++P YY  FS+++F Y N    N N+LL 
Sbjct: 72  NTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLLW 131

Query: 233 KMHNIDGIKTGYTRNSGFNIVTS----LRYKDDP---IVAVVMGMPTSQERDQKALELI 284
               +DG+KTG+T+ +G+ ++ S    L    D    +V V+MG     +R Q +++++
Sbjct: 132 LDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKML 190


>gi|150391165|ref|YP_001321214.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus
           metalliredigens QYMF]
 gi|149951027|gb|ABR49555.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus
           metalliredigens QYMF]
          Length = 257

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 131/247 (53%), Gaps = 6/247 (2%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLN 101
           M   + A+   ++I+   + N    F K    R P AS+TK+MT+ ++ + + + K+   
Sbjct: 1   MGKTILAQNARAAILFKASPNNKVLFQKHATKRLPIASITKLMTMLVLLDGIDAGKIKWT 60

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
            ++ +S  AA+   SK++LK            ++I  SAND + A  E +SG+   F   
Sbjct: 61  DKVEMSPAAASLYGSKIHLKPGEKLPVGDMFKSMIIASANDAAIALAEHLSGTMDNFIDK 120

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARD--QAILGILLRKNFPQY--YKYFSIRKF 217
           M+ KAK +G++N+ + N+ GL + N  ++A D  + +   L R+   +Y   KY  IRK 
Sbjct: 121 MNQKAKTLGLKNSHFVNSHGLFEDNHYSSAIDIVKMVSMALRREEILKYSRLKYDYIRKE 180

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
             + + + N NKL+  +  +DG+KTGYT  +G  +  +    +  ++AVV+G P    RD
Sbjct: 181 DNQLQKLVNTNKLIGTIPEVDGLKTGYTPLAGCCLAATALKDNVRLIAVVLGEPRKAVRD 240

Query: 278 QKALELI 284
           ++ +E++
Sbjct: 241 KEVIEML 247


>gi|147677558|ref|YP_001211773.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum
           thermopropionicum SI]
 gi|146273655|dbj|BAF59404.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum
           thermopropionicum SI]
          Length = 392

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 116/225 (51%), Gaps = 8/225 (3%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+++    ++   K+   R P AS+TK+MTL +  E +   K  L  ++  S+ A   
Sbjct: 49  SAILLEPATGKIIYEKEPHKRLPMASVTKLMTLLLAVEAVDEGKFKLTDRVVASENAWEM 108

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S++YL+     +    +LA+  +SAND S A  E I+GSE+ F   M+ KA+ +G+ N
Sbjct: 109 GGSQIYLEPGEEMSLWDLLLAIGLQSANDASVAVAEHIAGSEEAFVQAMNEKARSLGLNN 168

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYRNRI--ITNHNK 229
           T + N  GL   N  T+A D A   ++L++    P + K  +++++  R     + N NK
Sbjct: 169 TNFVNCHGLTADNHYTSAHDMA---MILKEGLKSPLFRKISAMKEYELRGGAFKLWNTNK 225

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           LL      D  KTG+T  + + + +S       ++ VV+G P  Q
Sbjct: 226 LLWWYDGADAGKTGWTEAAKYCLASSAERDGLRLICVVLGTPEPQ 270


>gi|88607085|ref|YP_505745.1| D-alanyl-D-alanine carboxypeptidase family protein [Anaplasma
           phagocytophilum HZ]
 gi|88598148|gb|ABD43618.1| D-alanyl-D-alanine carboxypeptidase family protein [Anaplasma
           phagocytophilum HZ]
          Length = 386

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 111/216 (51%), Gaps = 6/216 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D P   AS++K+MTLYI+ + L++  + L   + VS+ AA+      +LK     +    
Sbjct: 54  DAPTPTASMSKLMTLYIVLKNLKAGNIKLEDNLRVSEGAASAGAPTAFLKTGQLISVNDL 113

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           I      S ND      E +  S++KF   M+  AK++ ++N+ + N +G  D N ++  
Sbjct: 114 IKGAAVASGNDACITLAEGLYTSQEKFVEEMNRVAKELDLKNSRFVNVTGWPDDNMMSV- 172

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH---NIDGIKTGYTRNS 248
           RD  IL   + ++FP+YY +F  ++F Y    IT  N      +    +DGIKTG+TR  
Sbjct: 173 RDLLILSARILQDFPEYYYFFGEKQFTYNG--ITQKNYNALLNYNNIEVDGIKTGHTRTG 230

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           G+ +V S       ++ V+ G+ T  ER  +A +LI
Sbjct: 231 GYGMVASALKDGRRVLVVINGLSTETERAYEAKKLI 266


>gi|291550443|emb|CBL26705.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus torques L2-14]
          Length = 390

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 115/221 (52%), Gaps = 8/221 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D  R PAS+TK+MT+ +IF+ L++  + L+ ++  S+ AA+   S+++L+     T    
Sbjct: 59  DTARPPASVTKIMTMLLIFDALENGTISLDDEVSTSEYAASMGGSQVFLEPGEMQTVGTL 118

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +   SAND      E I G+E++F   M+ +AK +GM++T + N +GL       +A
Sbjct: 119 LKCISVASANDACVTMSECICGNEQEFVKQMNERAKGLGMKHTNFVNCNGLDADGHEMSA 178

Query: 192 RDQAILGILLRKNFPQYYKYFSIR-------KFRYRNRI-ITNHNKLLNKMHNIDGIKTG 243
           RD A++   L   +PQ   Y ++          R  +   +TN NKL+ +     G+KTG
Sbjct: 179 RDIALMSRELMTRYPQIKDYCTVWMENITHTTARGSSEFGLTNTNKLIRQYEYATGLKTG 238

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            T  + F +  +       ++AV+MG   S+ R + A+ L+
Sbjct: 239 STGKAKFCVSATASKNGVDLIAVIMGAEDSKSRFKDAVTLL 279


>gi|332186127|ref|ZP_08387873.1| D-alanyl-D-alanine carboxypeptidase family protein [Sphingomonas
           sp. S17]
 gi|332013942|gb|EGI56001.1| D-alanyl-D-alanine carboxypeptidase family protein [Sphingomonas
           sp. S17]
          Length = 390

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 118/231 (51%), Gaps = 15/231 (6%)

Query: 69  FKQDEPRY--PASLTKMMTLYIIFEYLQSKKLHLNTQIPV-----SKTAATQNPSKLYLK 121
           F++D  R   PAS+ KMMT+Y+ F+ ++  +L L+  + V     +K    Q  S ++L 
Sbjct: 47  FQRDADRRMPPASMAKMMTVYVAFDLIKKGQLKLDDMVTVQPETWAKWHGPQAGSTMFLS 106

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
                +    +  ++T S ND      E I+G+E+ F   M+  AK+IG+ N+ +  ++G
Sbjct: 107 PNEQVSVANLLYGIVTLSGNDACVVLAEHIAGTEQNFVERMNRTAKQIGLANSHFGTSNG 166

Query: 182 LHDKN-QITTARDQAILGILLRKNFPQYYK-YFSIRKFRY-----RNRII-TNHNKLLNK 233
             D      TARD A L     ++FP+ YK ++S R F +      N I   N + LL +
Sbjct: 167 WPDGGVTYVTARDLADLAEHTIQDFPKLYKQFYSRRDFTWGKTMGGNAITQANRDPLLGR 226

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +   DG+KTG+T  +G+    S       +V V+ G+ +S  R +++++ +
Sbjct: 227 VAGADGLKTGHTEEAGYGFTGSAEQNGRRLVMVMAGLTSSNARAEESVKFM 277


>gi|299133891|ref|ZP_07027085.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2]
 gi|298591727|gb|EFI51928.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2]
          Length = 408

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 121/249 (48%), Gaps = 11/249 (4%)

Query: 55  SSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-- 110
           ++I+ID     +  F++  DE R P+S+ K+MT  +IF  L   ++ L  +  +S+ A  
Sbjct: 50  TAILIDAKTGSVL-FEKNADELRAPSSMMKLMTAEVIFHALAKGEIKLTDEYRISENAWR 108

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
              A    S ++    +  + +  +  L+ +S ND   A  E  +GSE  F   M  +AK
Sbjct: 109 KGGAPSGSSTMFAAIHSQVSIDDLLHGLVIQSGNDSCIALAEGYAGSEDAFVNRMQARAK 168

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           ++G+  + + N +GL + +   + R+ A L   +   +P +YK F  R+F +      N 
Sbjct: 169 ELGLTRSTFGNTNGLPNPDNKMSVRELAHLTRHIILTYPDFYKLFGEREFTWNKIRQMNR 228

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA---LELI 284
           N LL  +   DG+KTGYT+  G+ +V S       ++ VV G+  S +R   A   LE  
Sbjct: 229 NPLLGSLDGADGLKTGYTKEGGYGMVGSAVQNGTRLIVVVNGLEDSGDRAAAAKKLLEWG 288

Query: 285 TSFLEKKTL 293
               E +TL
Sbjct: 289 FKNFESRTL 297


>gi|319405647|emb|CBI79270.1| Penicillin-binding protein [Bartonella sp. AR 15-3]
          Length = 390

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 142/282 (50%), Gaps = 21/282 (7%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSS-----IVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           L+ K+LF S++ I + +E     K+ +     ++ D N + +   KQ D   +PASL K+
Sbjct: 3   LLLKVLF-SLVWILVFNEQGQTKKFQTSALQLLIFDDNTDTILFEKQSDVVFFPASLVKL 61

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           MT  ++F  L+   L+   +  VS+ A     A    + ++ KEKT  +    +  LI  
Sbjct: 62  MTAEVVFYQLKKGFLNKTQKFKVSENAWRKGGAPSGTTTMFAKEKTEISVFDLLRGLIIV 121

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           + ND +    E I+G+E  FA LM+ +AK +G+  + + NA+GL +K Q  T RD   L 
Sbjct: 122 NGNDAAITLAEGIAGNEANFAKLMNKRAKTLGLLQSHFVNATGLPEKGQFITLRDIITLA 181

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNK--LLNKMHN--IDGIKTGYTRNSGFNIVT 254
             + + +P YY  +   KF +    IT HNK  LL + ++  I+G+  GY+   GF+ V 
Sbjct: 182 RHISREYPDYYALYREPKFTWNK--ITQHNKNSLLFQENDIEIEGLGFGYSEEIGFSTVV 239

Query: 255 SLRYKDDPIVAVVMGMPTSQERD---QKALELITSFLEKKTL 293
           S   K   I   V G+   +ER    ++ LE   +  + KT+
Sbjct: 240 SACKKQRRIFLAVNGLQNKKERTKEIERILEWAMTAFDLKTV 281


>gi|316934064|ref|YP_004109046.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris DX-1]
 gi|315601778|gb|ADU44313.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris DX-1]
          Length = 413

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 112/218 (51%), Gaps = 5/218 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT-----AATQNPSKLYLKEKTYF 126
           DE R P+S+ K+MT+ ++F  L++  L L  +  VS+       A    S ++ +  +  
Sbjct: 73  DELRAPSSMMKLMTVEVVFHLLKTGALQLAQEYRVSENSWRYGGAPAGGSTMFAEIHSSI 132

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           + +  +   I +S ND      E I+GSE  F   M+ +A+++G+  + + N++GL + +
Sbjct: 133 SVDNLLRGAIIQSGNDSCMVLAEGIAGSEAAFVERMTKRARELGLTQSTFGNSTGLPNPD 192

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
              + R+ A L   +   +P  Y  F  ++F +     TN N LLN +   DG KTG+T+
Sbjct: 193 NKMSVRELARLARHIILTYPDMYALFGEKEFTWNKIRQTNRNPLLNALPGADGFKTGFTK 252

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
             G+ +V S       ++ VV G+ ++ +R  +A +L+
Sbjct: 253 EGGYGLVGSAVQNGMRLIVVVNGLESADDRASEAKKLL 290


>gi|315643932|ref|ZP_07897102.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           vortex V453]
 gi|315280307|gb|EFU43596.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           vortex V453]
          Length = 336

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 121/241 (50%), Gaps = 19/241 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D P  PAS++KMMT  ++ + ++S +   + ++ +S+ AA    S + + E   +T  Q 
Sbjct: 86  DLPLPPASMSKMMTELLVLDAVRSGQHAWDEEVSISRYAAGVPGSGIGMVEGESYTLTQL 145

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLH------- 183
             ALI  SAND + A  E + GSE +F   M+ +AK+IG+ + T++ NASGL        
Sbjct: 146 FQALIIHSANDAAVAIAEHLKGSETQFVKEMNARAKEIGLSDRTVFANASGLPAADLASF 205

Query: 184 -----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK---LLNKMH 235
                +   I TARD A+L   +    P   +  S R F    + +T H     L  + H
Sbjct: 206 AEAATEGETIMTARDSAMLARWIMNKHPDLLEVTSQRDFPLPQKDLTLHTTNLMLPGEAH 265

Query: 236 NI---DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
                DG KTGYT ++G+    +     + +++VVMG  ++ +R  +  +L+    E++ 
Sbjct: 266 GYVGNDGFKTGYTSSAGYCFTGTAARGGNRLISVVMGTESTDQRFTETRKLMNYGFERQG 325

Query: 293 L 293
           +
Sbjct: 326 M 326


>gi|78044481|ref|YP_360920.1| D-alanyl-D-alanine carboxypeptidase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996596|gb|ABB15495.1| D-alanyl-D-alanine carboxypeptidase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 391

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 136/267 (50%), Gaps = 13/267 (4%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEY 92
           IL L +  I++A E     + ++ VI+VN  +    K  D+  YPAS TK+MT  I  E 
Sbjct: 11  ILILCLKTIALAEEPQIIGR-AAAVINVNSGKFVYLKNADQKMYPASTTKIMTTLIALE- 68

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
               K +L+ ++ + K A     S ++L      + E  + +++  SAND + A  ++I 
Sbjct: 69  ----KGNLSDRVYIDKEACYVEGSAIWLNPGEQLSLEDLLYSIMLNSANDSAIAVAKYIG 124

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           G    F   M++KA+++G +NT + N +GL + +  TTARD A++     +N P++ +  
Sbjct: 125 GDVATFVQEMNDKARELGAKNTHFVNPNGLPNDDHYTTARDLALIARAAMQN-PKFREIA 183

Query: 213 SIR-KFRYRN----RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           + + K   R+    R + NHNKLL +    +GIKTGYT  +   +V S     +  +AVV
Sbjct: 184 ATKTKVINRDPKYLRFLQNHNKLLWRYEGANGIKTGYTVKARQCLVASAARDGEEFIAVV 243

Query: 268 MGMPTSQERDQKALELITSFLEKKTLK 294
           +G       D     L  +F   KT+K
Sbjct: 244 LGSEGRNVYDDATKLLDYAFNNFKTVK 270


>gi|167628449|ref|YP_001678948.1| d-alanyl-d-alanine carboxypeptidase [Heliobacterium modesticaldum
           Ice1]
 gi|167591189|gb|ABZ82937.1| d-alanyl-d-alanine carboxypeptidase [Heliobacterium modesticaldum
           Ice1]
          Length = 386

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 107/200 (53%), Gaps = 6/200 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MTL + FE ++  K  L+ ++  S+ A     S++YL+          ++++ 
Sbjct: 60  PASVTKLMTLLVAFEAIEQGKASLDDKVVTSQRAFEMGGSQIYLEPGEEMVMRDLLISIA 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             SAND   A  E ISGS + +   M+ KA+ +G+++T + N  GL   N  T+A D A+
Sbjct: 120 VHSANDACVAVAEHISGSYEAYVDDMNKKAQSLGLKDTHFMNPHGLPVDNHYTSAHDMAV 179

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +     K+ P   ++ +I+  + R        + NHN+LL      DG KTG+T  + + 
Sbjct: 180 IAREALKH-PTLMQFVAIKHHKIRESSSKPMQLDNHNRLLWWYPGTDGFKTGWTSEAKYC 238

Query: 252 IVTSLRYKDDPIVAVVMGMP 271
           +V+++   +  ++A V G+P
Sbjct: 239 LVSTVERDNLRLIASVFGVP 258


>gi|251797290|ref|YP_003012021.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           sp. JDR-2]
 gi|247544916|gb|ACT01935.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           sp. JDR-2]
          Length = 425

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 124/231 (53%), Gaps = 12/231 (5%)

Query: 44  MASELHAKP-KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLN 101
           +A +L   P   ++I+ID     +   K +  R YPAS+TK++T  I+ E  QS    + 
Sbjct: 44  LAEQLPETPHSEAAILIDAKSGAVLFAKNETERLYPASITKIVTGIIVLE--QSNPTDIV 101

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
           T   VSKTA  ++ +++YL E         I  ++  S ND +TA  E I G++++FA  
Sbjct: 102 T---VSKTARGEDGTRIYLAEGEQKPMLDLIEGMLINSGNDAATAIAEHIDGTKEQFAER 158

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           M+   +K+G+ +T + N SGL D+NQ TTARD A +     +N  Q+ +  + +   +  
Sbjct: 159 MNEFVRKLGLWDTNFVNPSGLPDENQYTTARDMAKIAQYAMQN-EQFRQVVATKSKPWVG 217

Query: 222 RI----ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 + NHNK+L       G+K G+T+ +G+ +V++ +  D  ++ V++
Sbjct: 218 EEWVSKLENHNKMLGSYDGAIGVKNGFTQAAGYTLVSAAQRGDMELIGVIL 268


>gi|228990988|ref|ZP_04150951.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudomycoides
           DSM 12442]
 gi|228997075|ref|ZP_04156706.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides
           Rock3-17]
 gi|229004731|ref|ZP_04162467.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides
           Rock1-4]
 gi|228756524|gb|EEM05833.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides
           Rock1-4]
 gi|228762700|gb|EEM11616.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides
           Rock3-17]
 gi|228768768|gb|EEM17368.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudomycoides
           DSM 12442]
          Length = 343

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 128/235 (54%), Gaps = 13/235 (5%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++++ID +  Q M    ++E   PAS++KMMT YI+ E +   K+H   Q+ +S  +A  
Sbjct: 93  AAMIIDASNGQVMYKNNEEELLAPASMSKMMTAYILLENIHKGKVHWEDQVKISAKSAQA 152

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM-Q 172
             +++ ++     T +    AL+ +SAN+ + A  E I+ +E+ FA LM+  AK++ + +
Sbjct: 153 EGARIPVQTGDVLTVKDLYHALMIQSANNSAVALAEHIAKTEQDFAHLMNQTAKQLELSE 212

Query: 173 NTIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIITNH 227
            T + NASGL + +      T  D A L   L  ++P+      +R  +  +++ ++T+ 
Sbjct: 213 ATKFVNASGLQEPDGSETKMTVADVAKLAYHLVTDYPEILDVTHLRQSQLAFKSTMVTST 272

Query: 228 NKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           N++LN       +  +DG+KTG+T ++G+    + +  D  +V VVMG  +  +R
Sbjct: 273 NEMLNPANQGLYLEGMDGLKTGFTDSAGYCFTGTAKQGDKRLVTVVMGTKSQMKR 327


>gi|86749795|ref|YP_486291.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris HaA2]
 gi|86572823|gb|ABD07380.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris HaA2]
          Length = 419

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 121/237 (51%), Gaps = 8/237 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-- 110
           S+I+ID     +  F++  DE R P+S+ K+MT+ ++F  L   ++    +  +S+ A  
Sbjct: 61  SAILIDGESGSVL-FEKNADELRAPSSMLKLMTVELVFHLLAKGEIKPTDEYKISEYAWR 119

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
              A    S ++ +  +    E  +   I +S ND   A  E I+GSE  F   M+ +A+
Sbjct: 120 RGGAPAGNSTMFAEIHSKVAVEDLLKGAIIQSGNDSCIALAEGIAGSEPAFVERMTKRAR 179

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           +IG+  + + N++GL D     + R+   L   + + +P  YK FS ++F +     TN 
Sbjct: 180 EIGLTQSTFANSNGLPDPGNKMSVRELGRLARHIIQTYPNDYKLFSEKEFTWNKIRQTNR 239

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N LLN  +  DG+KTGYT++ G+ +V S       ++ VV G+    +R  +  +L+
Sbjct: 240 NPLLNTFNGADGLKTGYTKDGGYGMVGSAVQNGMRLIVVVNGIDDIDDRASEVKKLL 296


>gi|229017289|ref|ZP_04174193.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1273]
 gi|229023465|ref|ZP_04179962.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1272]
 gi|228737818|gb|EEL88317.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1272]
 gi|228743990|gb|EEL94088.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1273]
          Length = 317

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 134/252 (53%), Gaps = 21/252 (8%)

Query: 46  SELHAKPKY--------SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSK 96
           SE    PKY        ++I+ID +  ++     ++E   PAS++KMMT Y++ E + + 
Sbjct: 50  SEKVVPPKYIPPEIDAKAAIIIDASNGEVIYQNNENEAVAPASMSKMMTAYLVLENIHNG 109

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           K+H    + +S  +A    +K+ ++     T +    AL+  SAN+ + A  E ++ +EK
Sbjct: 110 KVHWEDPVKISAKSAQTEGAKIPMQANDTLTVKDLYHALMIESANNSAVALAEHVAKTEK 169

Query: 157 KFAILMSNKAKKIGMQNTI-YKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYF 212
            F  LM+ KAK++ M +   + NASGL + +      TA D A L   L K++P+  +  
Sbjct: 170 NFVQLMNEKAKQLEMSDKAKFANASGLQEPDGSETKMTAADVAKLAYHLIKDYPEILEVT 229

Query: 213 SIR--KFRYRNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
            +R  +  + N  +TN N++LNK      +  IDG+KTG+T ++G+    + +  D+ I+
Sbjct: 230 HLRQSQLAFNNVNVTNTNEMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDNRII 289

Query: 265 AVVMGMPTSQER 276
            VVMG  +  +R
Sbjct: 290 TVVMGTKSKTKR 301


>gi|320354992|ref|YP_004196331.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Desulfobulbus
           propionicus DSM 2032]
 gi|320123494|gb|ADW19040.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Desulfobulbus
           propionicus DSM 2032]
          Length = 422

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/204 (37%), Positives = 103/204 (50%), Gaps = 17/204 (8%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D PR PAS  K++T  I  + L++  +     I VS+ AA    SK++L     +     
Sbjct: 198 DNPRQPASTIKIVTAMIALKSLRNDDV-----INVSRRAADMPSSKIFLDPNRNYQANDL 252

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           I A++  SAND S A  E I+GSE KFA LM+  AK  G +NTI + ASGL    Q +TA
Sbjct: 253 INAVLLASANDASVALAEKIAGSEDKFATLMTLSAKMWGAKNTICRTASGLTADGQQSTA 312

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRN------RIITNHNKLLNKMHNIDGIKTGYT 245
           RD   L  L R  F   +  FS R+ R R+      + + NHNK L ++    G KTGYT
Sbjct: 313 RD---LANLFR--FAMQHDEFS-RRMRERSICTSYGKTLRNHNKALWRLDGAVGGKTGYT 366

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMG 269
             +    V     +   IV  +MG
Sbjct: 367 IAARQTYVGQFSREGQTIVVAIMG 390


>gi|196230570|ref|ZP_03129432.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chthoniobacter flavus
           Ellin428]
 gi|196225500|gb|EDY20008.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chthoniobacter flavus
           Ellin428]
          Length = 355

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 118/226 (52%), Gaps = 23/226 (10%)

Query: 54  YSSIVIDVNKNQMTGF-----KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           + +IV+D    ++TG        D P++PAS TK+MT  ++ E     +  L+ ++    
Sbjct: 86  WGAIVLD----ELTGKVLYEKNADAPQFPASCTKIMTALLVIE-----EGDLDHEVVCDV 136

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
             +    S L LK   +FT  Q +  L+ +SANDV+ A G   +GS + FA  M+ +A++
Sbjct: 137 EDSKVGESSLNLKPDQHFTRRQMLYGLMLKSANDVAHALGRDNAGSIEAFAEKMNRRARE 196

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYR-NRIIT 225
           +G QNT + N +GLH+    TT RD   L ++ R     P + +    R + +  N ++ 
Sbjct: 197 LGAQNTHFVNPNGLHNPEHYTTPRD---LALIARAAMHQPFFRQVVGTRDYNWNVNGVVD 253

Query: 226 ---NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              NHN+LL +     G+KTGYT  +   +V+S    +  +++VVM
Sbjct: 254 PLHNHNRLLERFPGCTGVKTGYTIPAQQVLVSSAMRGNREVISVVM 299


>gi|260752472|ref|YP_003225365.1| serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258551835|gb|ACV74781.1| Serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 400

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 111/222 (50%), Gaps = 14/222 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-----KTAATQNPSKLYLKEKTYFTTEQG 131
           PAS+ KMMT+Y+ F+ ++  +L L+  I V      K       S ++L      +    
Sbjct: 64  PASMAKMMTVYVAFDLIKKGQLKLDQPITVQPETWKKWHGPSAGSTMFLSPNEQVSAANL 123

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI-TT 190
           +  ++T S ND      E I+G+E+ F  LM+ KA+KIG+ N+ +  A+G  D      T
Sbjct: 124 LHGIVTLSGNDACVVLSEGIAGTEQAFVALMNEKAQKIGLTNSHFGTANGWPDGGATYVT 183

Query: 191 ARDQAILGILLRKNFPQYYK-YFSIRKFRY-----RNRIIT--NHNKLLNKMHNIDGIKT 242
           A D   L     ++FP  Y+ ++  R+F +       + IT  N + LL  +   DG+KT
Sbjct: 184 AHDLETLAEATIRDFPDLYRQFYGQREFTWGKTMGSGKDITQSNRDPLLGVIDGADGLKT 243

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           G+T  +G+    S   +   +V V+ G+P++  R ++++  +
Sbjct: 244 GHTDEAGYGFTGSAEQRGRRLVMVMAGLPSNAARREQSIAFM 285


>gi|114704618|ref|ZP_01437526.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein
           [Fulvimarina pelagi HTCC2506]
 gi|114539403|gb|EAU42523.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein
           [Fulvimarina pelagi HTCC2506]
          Length = 396

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 121/239 (50%), Gaps = 15/239 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-- 110
           +  ++++D N +        EP  PASL K+MT+ I+FE L++ ++ ++T+  V++ A  
Sbjct: 47  RTGTVILDKNAS--------EPFAPASLAKLMTMEIVFEALKAGEISMSTEYAVTEHAWR 98

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
              A    + ++    +       I   I + AND +    E + GSE++F   M+ +A+
Sbjct: 99  TGGAPSGAATMFAAINSRIPVADLIRGTIIQGANDGAIILAEGMFGSEEEFTERMNARAE 158

Query: 168 KIGMQNTIYKNASGL--HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
           ++G+ +T Y N +GL   +  Q TTARD   L   LR   P+ YK ++   F +      
Sbjct: 159 ELGLDDTRYANPTGLPTEEGEQQTTARDLVTLTRHLRSEHPELYKIYAEPAFEWNKIFQR 218

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N +L +    +G+ TGYT  SG++++ +        +  + G+ +S  R+ +A  L+
Sbjct: 219 NRNPVLREELGGEGVGTGYTEASGYSLMGAASKGGRTFLVALSGLESSAAREAEAQRLL 277


>gi|241761932|ref|ZP_04760017.1| Serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373612|gb|EER63184.1| Serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 400

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 111/222 (50%), Gaps = 14/222 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-----KTAATQNPSKLYLKEKTYFTTEQG 131
           PAS+ KMMT+Y+ F+ ++  +L L+  I V      K       S ++L      +    
Sbjct: 64  PASMAKMMTVYVAFDLIKKGQLKLDQPITVQPETWKKWHGPSAGSTMFLSPNEQVSAANL 123

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI-TT 190
           +  ++T S ND      E I+G+E+ F  LM+ KA+KIG+ N+ +  A+G  D      T
Sbjct: 124 LHGIVTLSGNDACVVLSEGIAGTEQAFVALMNEKAQKIGLTNSHFGTANGWPDGGATYVT 183

Query: 191 ARDQAILGILLRKNFPQYYK-YFSIRKFRY-----RNRIIT--NHNKLLNKMHNIDGIKT 242
           A D   L     ++FP  Y+ ++  R+F +       + IT  N + LL  +   DG+KT
Sbjct: 184 AHDLETLAEATIRDFPDLYRQFYGQREFTWGKTMGSGKDITQSNRDPLLGVIDGADGLKT 243

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           G+T  +G+    S   +   +V V+ G+P++  R ++++  +
Sbjct: 244 GHTDEAGYGFTGSAEQRGRRLVMVMAGLPSNAARREQSIAFM 285


>gi|56551985|ref|YP_162824.1| serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56543559|gb|AAV89713.1| Serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 400

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 111/222 (50%), Gaps = 14/222 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-----KTAATQNPSKLYLKEKTYFTTEQG 131
           PAS+ KMMT+Y+ F+ ++  +L L+  I V      K       S ++L      +    
Sbjct: 64  PASMAKMMTVYVAFDLIKKGQLKLDQPITVQPETWKKWHGPSAGSTMFLSPNEQVSAANL 123

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI-TT 190
           +  ++T S ND      E I+G+E+ F  LM+ KA+KIG+ N+ +  A+G  D      T
Sbjct: 124 LHGIVTLSGNDACVVLSEGIAGTEQAFVALMNEKAQKIGLTNSHFGTANGWPDGGATYVT 183

Query: 191 ARDQAILGILLRKNFPQYYK-YFSIRKFRY-----RNRIIT--NHNKLLNKMHNIDGIKT 242
           A D   L     ++FP  Y+ ++  R+F +       + IT  N + LL  +   DG+KT
Sbjct: 184 AHDLETLAEATIRDFPDLYRQFYGQREFTWGKTMGSGKDITQSNRDPLLGVIDGADGLKT 243

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           G+T  +G+    S   +   +V V+ G+P++  R ++++  +
Sbjct: 244 GHTDEAGYGFTGSAEQRGRRLVMVMAGLPSNAARREQSIAFM 285


>gi|159184785|ref|NP_354505.2| penicillin binding protein [Agrobacterium tumefaciens str. C58]
 gi|159140073|gb|AAK87290.2| penicillin binding protein [Agrobacterium tumefaciens str. C58]
          Length = 390

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 10/232 (4%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTY 125
           +D+   PASL K+MT+ ++ + L   ++   T  PVS+ A     A    S ++   K+ 
Sbjct: 56  EDQSFPPASLAKLMTVEVVLDALSKGQVTPETAYPVSEYAWRTGGAPSRTSTMFAALKSS 115

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
                 +  +I ++AND      E ++GS+  FA  M+ +A ++GM  +I+ N++GL D 
Sbjct: 116 VGINDLLTGIIVQNANDGCIIVAEGMAGSDAAFAKRMTARAGELGMNRSIFSNSTGLPDP 175

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT-NHNKLLNKMHNIDGIKTGY 244
              TTARD   L   L   +P  Y  F+   F + NRI   N N LL     IDG+  G+
Sbjct: 176 GNQTTARDMVRLAQHLHDTYPDRYALFTKPDFEW-NRIFQRNKNTLLMPGSGIDGLGLGF 234

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMP---TSQERDQKALELITSFLEKKTL 293
              SGF  V S   +   +   + G+    T QE  ++ ++   +  EK+ L
Sbjct: 235 AEGSGFAAVVSAEREGRRVYLALAGIADDKTRQEEARRVVDWGLTAFEKRHL 286


>gi|229150211|ref|ZP_04278433.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus m1550]
 gi|228633330|gb|EEK89937.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus m1550]
          Length = 317

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 131/243 (53%), Gaps = 16/243 (6%)

Query: 47  ELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E++AK   ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+     + 
Sbjct: 62  EINAK---AAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDPVK 118

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM  K
Sbjct: 119 MSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNAAVALAEHMAKSEKDFVQLMDAK 178

Query: 166 AKKIGM-QNTIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--KFRY 219
           AK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R  +  +
Sbjct: 179 AKQLKMSEHAKFANASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLRQSQLAF 238

Query: 220 RNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            N  + + N +LNK      +  IDG+KTG+T ++G+    + +  D+ I+ VVMG  + 
Sbjct: 239 NNINVISTNDMLNKNNKSLYIEGIDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSSK 298

Query: 274 QER 276
            +R
Sbjct: 299 TKR 301


>gi|260881606|ref|ZP_05404816.2| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM
           20544]
 gi|260848369|gb|EEX68376.1| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM
           20544]
          Length = 399

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 134/275 (48%), Gaps = 25/275 (9%)

Query: 21  SIYIQRNIQLMGK------ILFLSIIMISMAS--ELHAKPKY---SSIVIDVNKNQMTGF 69
           S+ I R I+ +G+      +L + + + SM S     A+P     ++I+ID +  ++   
Sbjct: 7   SLGILRYIRKLGRMGVGTMLLAVCLSLSSMTSVRAATAEPDIQAEAAILIDADTGRVLWS 66

Query: 70  KQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           K  E R YPAS+TKMMT  +  + L       + +I +S+ AA+     L++      T+
Sbjct: 67  KNGEERHYPASMTKMMTCLLGIQLLPP-----DAKITISQAAASTEDLPLHIARGDVLTS 121

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           E+ +  ++  S N  + A  E I GS   FA  M+ KA+++GM NT + N +GL D N  
Sbjct: 122 EELMRGMMMVSDNGAAVAIAEHIDGSAAVFAERMNEKAQELGMVNTHFANPNGLTDPNHY 181

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRY-------RNRIITNHNKLLNKMHNIDGIK 241
           +T  D A L     KN P +  +   ++ R        +  +  N N+LL     I GIK
Sbjct: 182 STPHDMARLAQYAMKN-PVFRDFVRQKERRVTWIAPAGKTLLAENTNELLGHYEGITGIK 240

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           TG+T  +G  +  S   +   ++AV+M  P+   R
Sbjct: 241 TGWTSAAGGCLAASAERQGVHLIAVLMKAPSEDAR 275


>gi|319407217|emb|CBI80856.1| Penicillin-binding protein [Bartonella sp. 1-1C]
          Length = 390

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 143/293 (48%), Gaps = 24/293 (8%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSS-----IVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           L+ K+LF S+I I + +E     K+ +     +++D N + +   KQ D   +PASL K+
Sbjct: 3   LLLKVLF-SLIWILIFNEQGQTKKFQTSALQLLILDDNTDTILFEKQSDVVFFPASLAKL 61

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           MT  ++F  L+   L+   +  VS+ A     A    + ++ KEKT  +    +  L+  
Sbjct: 62  MTAEVVFYQLKKGLLNKTQKFKVSENAWRKGGAPSGATTMFAKEKTEISVFDLLHGLVIV 121

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           + ND +    E I+G++  FA LM+ +AK +G+ N+ + NA+GL +K Q TT RD   L 
Sbjct: 122 NGNDAAITLAEGIAGNDANFAKLMNKRAKTLGLLNSHFVNATGLPEKGQFTTLRDIITLV 181

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN--IDGIKTGYTRNSGFNIVTSL 256
             + + +P YY  +    F +      N N L+ + ++  I+G+  GY+   GF+ V S 
Sbjct: 182 RHIAREYPDYYALYREPNFTWNKITQRNKNSLIFQENDVKIEGLGFGYSEEVGFSTVISA 241

Query: 257 RYKDDPIVAVVMGMPTSQERDQK----------ALELITSFLEKKTLKHQQTH 299
                 I   + G+   QER ++          A +L T F   +T+ +   +
Sbjct: 242 YNNQQRIFLAINGLQNKQERTKEVKRILEWAMTAFDLKTVFTRDETVGYASVY 294


>gi|49474221|ref|YP_032263.1| penicillin-binding protein [Bartonella quintana str. Toulouse]
 gi|49239725|emb|CAF26104.1| Penicillin-binding protein [Bartonella quintana str. Toulouse]
          Length = 387

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 15/245 (6%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKT 124
           + D P +PASL K+MT  ++F  L+   L       VS+ A     A    + ++ K KT
Sbjct: 48  QSDIPFFPASLVKLMTAEVVFYQLKQGLLSSTQTFEVSENAWRKGGAPSGTTTMFAKVKT 107

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
             +    +  LI  + ND +    E ISGSE  FA LM+ +A+ +G+ ++ + N +GL +
Sbjct: 108 KISVSDLLRGLIIVNGNDAAITLAEGISGSEADFAKLMNQRARTLGLSHSHFVNPTGLSE 167

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGY 244
           + Q+ T RD  +L   +   +P YY  +S   F +      N N L++K   ++G   GY
Sbjct: 168 EGQLVTLRDMIVLARHIAHTYPNYYALYSEPNFTWNKIFQRNKNPLISKEMGVEGFAFGY 227

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ------ER----DQKALELITSFLEKKTLK 294
           +   GF++V +       +   + G+   +      ER       A +L T F++ +T+ 
Sbjct: 228 SEKEGFSMVVAAYKNHRRLFLAINGLQDGKGHTKEIERILQWGMTAFDLKTIFIKGETVG 287

Query: 295 HQQTH 299
           H   +
Sbjct: 288 HASVY 292


>gi|46205327|ref|ZP_00209803.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 261

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 74/123 (60%)

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
           +M+  A KIGM+ + + N +GL +  Q T+ARD AIL   L ++FP     FSI   +Y 
Sbjct: 1   MMNETAHKIGMRESRWYNPNGLPEPRQWTSARDMAILARALMRDFPDQQGLFSISAIQYG 60

Query: 221 NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
             ++ NHN LL +    DG+KTG+  + GFN+V +       I+ VVMG P+++ERD KA
Sbjct: 61  KAVMANHNGLLGRYPGADGMKTGFICSGGFNVVATATRNGRRIITVVMGQPSARERDIKA 120

Query: 281 LEL 283
            +L
Sbjct: 121 ADL 123


>gi|291087166|ref|ZP_06345583.2| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
 gi|291075839|gb|EFE13203.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
          Length = 464

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 112/226 (49%), Gaps = 22/226 (9%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK---LYLKEKTYFTT 128
           D   YPAS+TK+MT  ++ E+       L+  +  S++A T   S    L +K    FT 
Sbjct: 102 DAQHYPASITKLMTALLVLEHCS-----LSDTVTFSQSAVTNLESGAVTLGVKAGDQFTV 156

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           EQ +  L+ +SAN+++    E +SGS   FA LM+ KA  +G   T + N +GL+D N  
Sbjct: 157 EQCLYGLLLKSANEIANGLAEHVSGSVSSFADLMNQKAASLGCTGTHFVNPNGLNDPNHY 216

Query: 189 TTARDQAILG-------ILLR------KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           TTARD A++         L R       +FP      S+RK    ++++  +NK      
Sbjct: 217 TTARDMALIAEAAFENPTLCRIASTVNYDFPATASVPSVRKLTMGHKMVNPNNKEY-YYE 275

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
            I G KTGYT  +G  +VT +      ++AV++    +   D KAL
Sbjct: 276 GIVGGKTGYTSLAGNTLVTCVERNGTRLIAVILKSRQTHYADTKAL 321


>gi|73667472|ref|YP_303488.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ehrlichia canis str.
           Jake]
 gi|72394613|gb|AAZ68890.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ehrlichia canis str.
           Jake]
          Length = 383

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 111/205 (54%), Gaps = 2/205 (0%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE    +S++ +MTLY+ F Y+++  + +  +   SK A  +  + ++L+          
Sbjct: 55  DEQFVSSSMSNLMTLYVTFFYIKAGFVRMEDKFKTSKEAWQKGGNSIFLRAGQLVAVRDL 114

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           I  +IT SAND      E ISGS+++F   M+  A+K+ +  + + N  G+ D+NQ+ +A
Sbjct: 115 INGIITTSANDACITLAEGISGSQEEFVKEMNRIAQKLNLTKSHFTNVIGVQDQNQVMSA 174

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           RD   L + L K+FP+YY  FS + F+Y N    + N LL   + +D +   +T ++G+ 
Sbjct: 175 RDLITLMVNLFKDFPEYYHLFSKKDFKYNNIYQESINMLLPD-NRVDCMIAAHT-DTGYG 232

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQER 276
            + + +++   I   + G+ T +ER
Sbjct: 233 SIVAAKHEGRKIFMFINGLQTKEER 257


>gi|160935972|ref|ZP_02083346.1| hypothetical protein CLOBOL_00869 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441214|gb|EDP18931.1| hypothetical protein CLOBOL_00869 [Clostridium bolteae ATCC
           BAA-613]
          Length = 549

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 128/277 (46%), Gaps = 29/277 (10%)

Query: 31  MGKILFLSIIMISMAS----ELHAKPKYSS---------IVIDVNKNQ-MTGFKQDEPRY 76
           M + L L I +   A        A P++ S         IV+D +    + G   D+P Y
Sbjct: 6   MKRFLMLFICLCLCAGLFPITAAAAPEWPSDVSIQADAGIVMDSDTGTVLYGKNMDQPYY 65

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK++T  I+ E     ++   +   V    A    S   + E    T    + AL+
Sbjct: 66  PASITKILTALIVLEQCDLNEMVTFSHDDVYNVEAGS--SSAGIDEGDVLTVRDCLYALM 123

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             SAN+ + A    +SGS + FA LM+ KA+ +G   + + N SGL+D+N  TTA D A+
Sbjct: 124 LASANESANALACHVSGSREAFAQLMNEKARSLGCTGSHFNNPSGLNDENHYTTAHDMAL 183

Query: 197 LGILLRKNFPQYYKYFSIRKFRY-------RNRIITNHNKLLNKMHNI--DGI---KTGY 244
           +     +N P++      R ++            + NH+K+LNK   +   G    KTGY
Sbjct: 184 IARAAIQN-PEFLTINGTRSYQLAPTKRTPEGGYVANHHKMLNKNEAVYYPGAFAGKTGY 242

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           T  +G  +VT  R  D  ++AVV+    S   D KAL
Sbjct: 243 TSLAGNTLVTCARKNDMTLIAVVLNGHQSHYSDTKAL 279


>gi|295091424|emb|CBK77531.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cf.
           saccharolyticum K10]
          Length = 474

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 112/226 (49%), Gaps = 22/226 (9%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK---LYLKEKTYFTT 128
           D   YPAS+TK+MT  ++ E+       L+  +  S++A T   S    L +K    FT 
Sbjct: 112 DAQHYPASITKLMTALLVLEHCS-----LSDTVTFSQSAVTNLESGAVTLGVKAGDQFTI 166

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           EQ +  L+ +SAN+++    E +SGS   FA LM+ KA  +G   T + N +GL+D N  
Sbjct: 167 EQCLYGLLLKSANEIANGLAEHVSGSVSSFADLMNQKAASLGCTGTHFVNPNGLNDPNHY 226

Query: 189 TTARDQAILG-------ILLR------KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           TTARD A++         L R       +FP      S+RK    ++++  +NK      
Sbjct: 227 TTARDMALIAEAAFENPTLCRIASTVNYDFPATASVPSVRKLTMGHKMVNPNNKEY-YYE 285

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
            I G KTGYT  +G  +VT +      ++AV++    +   D KAL
Sbjct: 286 GIVGGKTGYTSLAGNTLVTCVERNGTRLIAVILKSRQTHYADTKAL 331


>gi|296284125|ref|ZP_06862123.1| D-alanyl-D-alanine carboxypeptidase [Citromicrobium bathyomarinum
           JL354]
          Length = 378

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 128/264 (48%), Gaps = 13/264 (4%)

Query: 34  ILFLSIIMISMASELHAKPKYS-------SIVIDVNKNQMTGFKQDEPRY-PASLTKMMT 85
           + FL+ + +++ + L A+P          + +ID++  Q    +  + R+ PAS+TK+MT
Sbjct: 2   VGFLAALSLALPTGLSAQPSPPTPEQAPIAYMIDLSSGQTLYARDIDRRFVPASITKVMT 61

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSAND 142
             + F+ L   KL  + ++P    +  +     S L+L  +   +  + ++ + T SAND
Sbjct: 62  TLVAFDMLADGKLRRDQRMPYRDASFDEWHRKGSTLFLPRRARPSVNELLIGITTVSAND 121

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ-ITTARDQAILGILL 201
            +    E  SGS  K+   M+  A+ IGM ++ +   +G  D+    T+ARD  +L   +
Sbjct: 122 AAVVLAEGASGSVDKWTARMNATARSIGMHDSYFGTPNGWPDEGHTFTSARDLGLLAKRI 181

Query: 202 RKNFPQYYKYFSIR-KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
            +  P ++ Y+  R   +       NH+ +  ++   DG+KTGYT  +G+  + +     
Sbjct: 182 IRGHPDFFDYYYGRTGLKAYGIAQDNHDPITGRVDGADGLKTGYTDQAGYGFLGTAERDG 241

Query: 261 DPIVAVVMGMPTSQERDQKALELI 284
             +V VV G    Q R++ A + I
Sbjct: 242 RRLVMVVAGADRGQVRNRAARDFI 265


>gi|114706870|ref|ZP_01439770.1| Serine-type D-Ala-D-Ala carboxypeptidase [Fulvimarina pelagi
           HTCC2506]
 gi|114537818|gb|EAU40942.1| Serine-type D-Ala-D-Ala carboxypeptidase [Fulvimarina pelagi
           HTCC2506]
          Length = 387

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 113/228 (49%), Gaps = 10/228 (4%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYFTTEQG 131
           PASL K+MT+ ++F+ L+   +  +    VS+ A     A    S ++L      + +  
Sbjct: 57  PASLAKLMTIAVVFDELEKGTISRDQTFTVSEDAWRTGGANSGGSTMFLPLGGEVSVDDL 116

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +I +S ND +    E I+GS   FA +M+ +A+ IG+ ++ + N+SGL   +   T 
Sbjct: 117 LKGIIIQSGNDATIVIAEGIAGSVDAFADMMNKRAQAIGLTHSRFGNSSGLPHPDSHVTM 176

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           RD   L   L + +P+ Y  F+   +RY      N N LL+     DG+KTG+T+ +G+ 
Sbjct: 177 RDLVTLAEHLIREYPEEYPAFAEESYRYNGITQNNRNPLLSL--GADGLKTGHTQAAGYG 234

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKKTLKHQ 296
           +V S       +V  +  M +S ER    Q+ +E      E+ TL  +
Sbjct: 235 LVASAEADGRRVVFALSRMASSNERARESQRMMEFGLQDFEEVTLAEE 282


>gi|326387759|ref|ZP_08209365.1| Serine-type D-Ala-D-Ala carboxypeptidase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207805|gb|EGD58616.1| Serine-type D-Ala-D-Ala carboxypeptidase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 398

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 113/231 (48%), Gaps = 9/231 (3%)

Query: 56  SIVIDVNKNQMTGFKQDEPR--YPASLTKMMTLYIIFEYLQSKKLHLNTQI---PVSKTA 110
           ++++DVN  ++  F +D  R   PASLTK+MT Y+ FE +++ KL L+ +    P +   
Sbjct: 46  AMMVDVNSGRVL-FARDPHRRFVPASLTKIMTSYVAFELIKAGKLRLDQKFVMRPETFHK 104

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S ++L   +  +    +  ++T SAND      E I+GS   F  +M+ +AKKIG
Sbjct: 105 WHGVGSTMFLGNNSSTSVADLLEGIVTVSANDACVVLAEGIAGSVPGFTAMMNAEAKKIG 164

Query: 171 MQNTIYKNASGLHDKNQI-TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII-TNHN 228
           M+++ Y   +G  D+ +   +A D   L   L    P  YK F        N I   NHN
Sbjct: 165 MRDSHYNTPNGWMDQGETYVSAADLVALSTALITRHPDLYKRFYGHDHATFNGIAQENHN 224

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-DQ 278
            L       DG+KTG+T  +G+  V S+      ++ VV G     +R DQ
Sbjct: 225 PLYGHTPGADGVKTGFTGEAGYGFVGSVERGGRRVIMVVAGYGRPNDRADQ 275


>gi|218233888|ref|YP_002366673.1| beta-lactamase [Bacillus cereus B4264]
 gi|218161845|gb|ACK61837.1| beta-lactamase [Bacillus cereus B4264]
          Length = 317

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 131/243 (53%), Gaps = 16/243 (6%)

Query: 47  ELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E++AK   ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+     + 
Sbjct: 62  EINAK---AAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDPVK 118

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM  K
Sbjct: 119 ISAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMDAK 178

Query: 166 AKKIGM-QNTIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--KFRY 219
           AK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R  +  +
Sbjct: 179 AKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLRQSQLAF 238

Query: 220 RNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            N  + + N +LNK      +  +DG+KTG+T ++G+    + +  D+ I+ VVMG  + 
Sbjct: 239 NNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSSK 298

Query: 274 QER 276
            +R
Sbjct: 299 TKR 301


>gi|227486588|ref|ZP_03916904.1| serine family D-Ala-D-Ala carboxypeptidase [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227235406|gb|EEI85421.1| serine family D-Ala-D-Ala carboxypeptidase [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 402

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 120/227 (52%), Gaps = 14/227 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTT 128
           DEPR  ASL+K+MT  +  + + S  L L+T++   K A    +   S L +KE   +T 
Sbjct: 57  DEPRAMASLSKLMTFLVTMDAIHSGALKLDTKVKADKEAEKLTSWEYSSLGVKEGETYTV 116

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-- 186
           ++ +  LI  S ND +      +S SE  FA  M+ KAK++ +++ +Y N+SG+  ++  
Sbjct: 117 DELLKGLIAVSGNDCAYLLANTVSVSEPAFAREMNEKAKELDLKSQVYYNSSGVQTEDGY 176

Query: 187 -QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN--KLLNKMHNIDGIKTG 243
              ++ARD   L   + K +P+   Y +IR+ +   R I   +   L++++  +DG+KTG
Sbjct: 177 QNTSSARDLFKLSQYILKTYPEILDYAAIREIKDPGRDIDKKSTIPLMDEIKGVDGLKTG 236

Query: 244 YTRNSGFNIVTS-----LRYKDD-PIVAVVMGMPTSQERDQKALELI 284
            T  +G+ +VT+     L   DD   + VVMG      R++   +LI
Sbjct: 237 TTDEAGYCLVTTVDMSKLDSNDDFRSIGVVMGADQKDTRNKVMSDLI 283


>gi|229079157|ref|ZP_04211706.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock4-2]
 gi|228704174|gb|EEL56611.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock4-2]
          Length = 317

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 132/243 (54%), Gaps = 16/243 (6%)

Query: 47  ELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E++AK   ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+     + 
Sbjct: 62  EINAK---AAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDPVK 118

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM  K
Sbjct: 119 MSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMDAK 178

Query: 166 AKKIGM-QNTIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--KFRY 219
           AK++ M ++  ++NASGL + +      TA D A L   L K++P+  +   +R  +  +
Sbjct: 179 AKQLKMSEHAKFENASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLRQSQLAF 238

Query: 220 RNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            N  + + N +LNK      +  +DG+KTG+T ++G+    + +  D+ I+ VVMG  + 
Sbjct: 239 NNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSSK 298

Query: 274 QER 276
            +R
Sbjct: 299 TKR 301


>gi|226309602|ref|YP_002769496.1| D-alanyl-D-alanine carboxypeptidase precursor [Brevibacillus brevis
           NBRC 100599]
 gi|226092550|dbj|BAH40992.1| D-alanyl-D-alanine carboxypeptidase precursor [Brevibacillus brevis
           NBRC 100599]
          Length = 438

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 134/283 (47%), Gaps = 41/283 (14%)

Query: 35  LFLSII-----MISMASELHAKP----------KYSSIVIDVNKNQMTGFKQ-DEPRYPA 78
           LFLS+      M  M S++ A P            S+I+++ +  ++   K  D    PA
Sbjct: 13  LFLSVAVFATAMGGMVSKVEAAPVASQANLQLEAKSAILVEASTGKVLYSKDPDVALPPA 72

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEKTYFTTEQGILA 134
           S++KMMT Y++ + ++ KK+  +  +PVS+     A   + S +YL     FT +Q   A
Sbjct: 73  SMSKMMTEYLVHDAIKQKKMKWDDVVPVSEYAFYIAKISDSSGVYLNLGESFTVKQLYEA 132

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------------ 182
           +   SAND +    E I+GSE  F  LM+ KA ++GM+NT +  ++GL            
Sbjct: 133 MAIVSANDATVLLAEHIAGSEAAFVELMNKKAAELGMKNTSFVTSTGLPADELGPYSVQT 192

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYK-----YFSIRKFRYRNRIITNHNKLLNKM--- 234
             K  + +ARD AIL   L  +FP   +      F+ R          N+N +L  +   
Sbjct: 193 DQKENLMSARDSAILARALIHDFPDALETSKKPIFTFRTGTPNEWTKKNYNWMLPSLISY 252

Query: 235 -HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
              +DG+KTG+T  +GF    +    +  +++VVM   T  +R
Sbjct: 253 YPGVDGLKTGHTDAAGFCFTGTAVRDNMRLISVVMKASTESKR 295


>gi|315644241|ref|ZP_07897411.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           vortex V453]
 gi|315280616|gb|EFU43905.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           vortex V453]
          Length = 330

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 137/287 (47%), Gaps = 42/287 (14%)

Query: 14  FLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQ-MTGF 69
            +T P G++ I  NI+  G                  +PK  +   +++D+N  + +   
Sbjct: 13  LITVPIGAVVIG-NIERAG-----------------FRPKVDARAVVLMDLNTGRILLSE 54

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE 129
             D P  PAS++K+MT  +I + +++ K   + ++ +S TA+  +  K+ LK   + T  
Sbjct: 55  NGDIPLPPASMSKLMTELVILDDIKTGKKSWDDEVQISDTASGVSGIKIALKSGEFLTVR 114

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM-QNTIYKNASGLH---DK 185
           +   ++   SAND + A  E  +GSE+ F   M+ KAK+IGM  +T + NASG+    D 
Sbjct: 115 ELFQSITVYSANDAAVALAEHFAGSEEAFVQKMNAKAKEIGMSSSTHFVNASGVESHTDN 174

Query: 186 NQ--------ITTARDQAILGILLRKNFPQYYKYFS--IRKFRYRNRIITNHNKLLNKM- 234
           +Q        + TA D A L   L K+ P      S    K   RN  ++N N +L  + 
Sbjct: 175 DQEWSSERETVMTAEDTAKLAAHLIKSHPDILSTSSKTQTKISGRNLYLSNTNWMLPSLG 234

Query: 235 -----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
                   DG+KTGYT N+G+    +   +   ++AVVMG  + + R
Sbjct: 235 GPYSYEGTDGLKTGYTVNAGYCFTGTAEKQGSRLIAVVMGTESKEAR 281


>gi|260892123|ref|YP_003238220.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ammonifex
           degensii KC4]
 gi|260864264|gb|ACX51370.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ammonifex
           degensii KC4]
          Length = 392

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 117/244 (47%), Gaps = 14/244 (5%)

Query: 34  ILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYII 89
           I  + +  + +     A P+    ++++++    Q+   K  E R YPAS TK++T  ++
Sbjct: 8   IALIFVFFLGLGQAWAAPPEVKAEAAVLMEAETGQILYAKNPEERMYPASTTKILTALVV 67

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            ++ +     LN QI  S  A     S ++LKE    + +  + AL+  SANDV+ A  +
Sbjct: 68  LQHAR-----LNDQIVASPEAVGTEGSSIWLKEGEKLSVKDALYALLLNSANDVAVALAQ 122

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA-----ILGILLRKN 204
            +SGS   FA LM+  A+  G  ++ + N  GL D    TTA D A      LG  L + 
Sbjct: 123 KVSGSIPAFAQLMNETARACGATSSHFTNPHGLPDPEHYTTALDLARITRVALGNRLFRE 182

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
                 Y   R       ++ NHNKLL +     G+KTGYT  +G  +V + +     ++
Sbjct: 183 IVATKTYTFHRPTLPEPFVLVNHNKLLWRYEGAIGVKTGYTTAAGQCLVAAAQRNGRELI 242

Query: 265 AVVM 268
           AV++
Sbjct: 243 AVIL 246


>gi|209885251|ref|YP_002289108.1| penicillin-binding protein 6 [Oligotropha carboxidovorans OM5]
 gi|209873447|gb|ACI93243.1| penicillin-binding protein 6 [Oligotropha carboxidovorans OM5]
          Length = 425

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 5/204 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYF 126
           DE R P+S+ K+MT  +IF  L   ++ L  +  +S+ A     A    S ++    +  
Sbjct: 85  DELRAPSSMMKLMTAEVIFHALAKGEIKLTDEYRISENAWRRGGAPSGGSTMFAAIHSIV 144

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           + +  +  L  +S ND   A  E  +GSE  F   M  +A++IG+  + + N +GL D +
Sbjct: 145 SVDDLLHGLAIQSGNDSCIALAEGYAGSESAFVAKMQARAREIGLARSTFGNTNGLPDPD 204

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
              + R+   L   L   +P  YK F  R+F +      N N LL  +   DG+KTGYT+
Sbjct: 205 NKMSVRELGHLARHLILTYPDLYKLFGEREFTWNKIRQQNRNPLLASLDGADGLKTGYTK 264

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGM 270
             GF +V S       +V VV G+
Sbjct: 265 EGGFGMVGSAVQNGTRLVVVVNGL 288


>gi|118589859|ref|ZP_01547263.1| penicillin binding protein [Stappia aggregata IAM 12614]
 gi|118437356|gb|EAV43993.1| penicillin binding protein [Stappia aggregata IAM 12614]
          Length = 384

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 113/231 (48%), Gaps = 6/231 (2%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEK 123
           + D P  P +L K+MT   +F+ L+   L L+    VS+       A +   + ++   K
Sbjct: 47  EPDRPFSPGALVKVMTAATVFKSLKDGDLKLDQTCKVSEHAWRTGGAPSGRGATMFAAIK 106

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
           +    E  +  L+  + ND +    E + GSE+ FA+ M+  A  IGM+N+ + N++G  
Sbjct: 107 SDIPVEDLLKGLLVHNGNDAAIVLAECLDGSEEAFAVRMTEFAHAIGMKNSRFGNSTGYP 166

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTG 243
           +    TT RDQA L   + ++    Y  F+I +F +      N N LL ++ N+DG+  G
Sbjct: 167 EVPSQTTVRDQARLAEYILESHADLYPMFAIPEFTWNKIFQRNKNPLLGEIRNLDGLGGG 226

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
               +G++ + S+      ++A V G+ + + R Q   E+I    E  T++
Sbjct: 227 NDAEAGYSGLGSVDRNGRRVIAAVAGLSSDKHRLQTLKEVIEGAWEYFTVQ 277


>gi|326391076|ref|ZP_08212623.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992861|gb|EGD51306.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 379

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 98/312 (31%), Positives = 152/312 (48%), Gaps = 33/312 (10%)

Query: 34  ILFLSIIMISMAS-ELHAK--PKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTL 86
           IL+L I++  M+S +++A+  P  S+   IV+D    ++   K    + P AS TK+MTL
Sbjct: 5   ILYLFILLYFMSSVKVYAESYPSISAKAAIVMDQETGRVLYEKNSHEKLPMASTTKIMTL 64

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            +  E     K +LN  + VSK AA+   S ++L        E  +  L+  S ND +TA
Sbjct: 65  LVALE-----KGNLNDIVTVSKRAASVGGSSIWLSPGEKIDMESLLFGLMLNSGNDAATA 119

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILGILLRKN 204
             E I GS + F  +M+ KAK+IG  NT +   SGL     +  TTA D   L ++ R  
Sbjct: 120 IAEHIGGSVESFVEIMNQKAKEIGAYNTHFVTPSGLDIGIDDHYTTAYD---LALITRYA 176

Query: 205 F--PQYYKYFSIR------KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           F  P++ +  S +      + +  +R + N NKLL      DG+KTG+T  +G  +V+S 
Sbjct: 177 FRYPKFAEIVSTKEKTIPWEGKEWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVSSA 236

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITS------FLEKKTL--KHQQTHRKDNLSSTS 308
             +    +AVV+  P   E   K L+   S       LEK  L  K +    K+N  S  
Sbjct: 237 TREGRRFIAVVLNSPPMWEDSMKILDYAFSKYKPYKVLEKGELIKKVKVEGGKENTVSVV 296

Query: 309 LKKSLMIKKLKR 320
            +K+ +I  L+ 
Sbjct: 297 SEKACVIPALEE 308


>gi|94264946|ref|ZP_01288718.1| Serine-type D-Ala-D-Ala carboxypeptidase [delta proteobacterium
           MLMS-1]
 gi|94267812|ref|ZP_01290999.1| Serine-type D-Ala-D-Ala carboxypeptidase [delta proteobacterium
           MLMS-1]
 gi|93451851|gb|EAT02592.1| Serine-type D-Ala-D-Ala carboxypeptidase [delta proteobacterium
           MLMS-1]
 gi|93454602|gb|EAT04877.1| Serine-type D-Ala-D-Ala carboxypeptidase [delta proteobacterium
           MLMS-1]
          Length = 359

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 122/243 (50%), Gaps = 12/243 (4%)

Query: 32  GKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIF 90
           G  L    +  S+  ++ A+   +++VID    ++      D PR PAS  K++T  I  
Sbjct: 73  GNYLTGGAVAASLERQITAR---TAVVIDAASGRLIYSLNPDTPRQPASTIKVITALIAL 129

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           + L+   +     +P S+ AA    SK+YL++   +     + A++ RSAND + A  E 
Sbjct: 130 DSLREHAM-----VPTSRRAAQMPRSKVYLQQGRSYRAGDLVDAILMRSANDAAVALAEK 184

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK-NFPQYY 209
           I+G+E+ FA LM++K + +G  NT  +NA+GL  + Q +TARD A+  IL R    P+  
Sbjct: 185 IAGNERAFARLMTSKVRAMGANNTTLRNANGLTAQGQQSTARDLAL--ILHRAMEHPELA 242

Query: 210 KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           +           + +   N+ L +++   G KTG+TR +    V   +  +  ++  +MG
Sbjct: 243 QRLGTVSTNGLGQTMRTSNRALWQINGSQGGKTGFTRAAQQTYVGKFQRGNHELIVALMG 302

Query: 270 MPT 272
             T
Sbjct: 303 STT 305


>gi|49475609|ref|YP_033650.1| penicillin-binding protein [Bartonella henselae str. Houston-1]
 gi|49238416|emb|CAF27643.1| Penicillin-binding protein [Bartonella henselae str. Houston-1]
          Length = 387

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 146/320 (45%), Gaps = 24/320 (7%)

Query: 33  KILFLSIIMISMASELHAKPKYSS----IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLY 87
           +I F    M+++     A+   +S    +++D + + +   KQ D P +PASL K+MT  
Sbjct: 6   RIFFTLFWMLTLDGRGKAEDFQTSAQQLLLVDDDTDTVLFEKQSDIPFFPASLAKLMTAE 65

Query: 88  IIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +IF  L+   L       VS+ A     A    + ++ K KT  +    +  LI  + ND
Sbjct: 66  VIFHQLKEGLLSNTQTFKVSENAWRKGGAPSGTTTMFAKVKTEISVSDLLRGLIIVNGND 125

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            +    E +SGSE  FA LM+ +AK +G++++ + N +GL ++ Q  T RD   L   + 
Sbjct: 126 AAITLAEGVSGSEADFAKLMNQRAKALGLEHSYFVNPTGLPEEEQFVTLRDMMTLTRHIA 185

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           + +P YY  +    F +      N N L++K   ++G   GY+   GF++V +       
Sbjct: 186 RAYPNYYILYREPHFTWNKIFQRNKNPLISKEIGVEGFGFGYSEEEGFSMVVAAYKNHRH 245

Query: 263 IVAVVMGMPTSQERDQK----------ALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           +   + G+   +   ++          A +L T F + +T+ H   +  +  S   + K 
Sbjct: 246 LFLAINGLQNGKGHTKEIERILQWGMTAFDLKTIFTKGETVGHASVYGGEQNSVPLIVKG 305

Query: 313 LMIKKLKRTYSQFKKIDAKA 332
                ++   S  KK+D KA
Sbjct: 306 ----PIRFMLSNEKKVDVKA 321


>gi|258510666|ref|YP_003184100.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257477392|gb|ACV57711.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 455

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 116/244 (47%), Gaps = 12/244 (4%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++V+D++   +   K    P YPAS+TK+MT       L  +  HL   +  S  A  Q
Sbjct: 73  AAVVMDMDTGAVVYAKHSTAPHYPASITKIMT-----ALLALRLGHLTDVLTASTDAVRQ 127

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
            P KLY++     T +  +  L+  SAND +    E   GS   FA +M+ +A+ +G  +
Sbjct: 128 PPDKLYMRAGEKATLKDLLYGLLIDSANDAAVEIAERYGGSVAHFADMMNAEARALGATH 187

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN----RIITNHNK 229
           T + N SGL D   +TTA D A++        P++      R F ++       +TN N+
Sbjct: 188 THFVNPSGLPDPRHVTTAYDMAVIA-RAAMQIPEFRTIVDTRSFDWKGTAWQATLTNLNR 246

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT-SFL 288
           +L       G+KTG+T  +   +V +        +AV+M  PT  E  Q A  L+  +FL
Sbjct: 247 MLFTYPGAIGVKTGFTSVAHETLVVAATRGGTTFLAVLMDCPTDAEIRQDATNLLNYAFL 306

Query: 289 EKKT 292
             +T
Sbjct: 307 HDET 310


>gi|218896938|ref|YP_002445349.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           G9842]
 gi|228964967|ref|ZP_04126069.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|218545350|gb|ACK97744.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           G9842]
 gi|228794708|gb|EEM42212.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 317

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 131/252 (51%), Gaps = 21/252 (8%)

Query: 46  SELHAKPKY--------SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSK 96
           SE    PKY        ++++ID +   +   + ++E   PAS++KMMT Y++ E + + 
Sbjct: 50  SEKVVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNG 109

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           K+     + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK
Sbjct: 110 KVRWEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEK 169

Query: 157 KFAILMSNKAKKIGM-QNTIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYF 212
            F  LM  KAK++ M ++  + NASGL + +      TA D A L   L K++P+  +  
Sbjct: 170 DFVQLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVT 229

Query: 213 SIR--KFRYRNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
            +R  +  + N  + + N +LNK      +  +DG+KTG+T ++G+    + +  D+ I+
Sbjct: 230 HLRQSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRII 289

Query: 265 AVVMGMPTSQER 276
            VVMG  +  +R
Sbjct: 290 TVVMGTSSKTKR 301


>gi|228900575|ref|ZP_04064797.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           IBL 4222]
 gi|228859058|gb|EEN03496.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           IBL 4222]
          Length = 309

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 131/252 (51%), Gaps = 21/252 (8%)

Query: 46  SELHAKPKY--------SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSK 96
           SE    PKY        ++++ID +   +   + ++E   PAS++KMMT Y++ E + + 
Sbjct: 42  SEKVVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNG 101

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           K+     + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK
Sbjct: 102 KVRWEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEK 161

Query: 157 KFAILMSNKAKKIGM-QNTIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYF 212
            F  LM  KAK++ M ++  + NASGL + +      TA D A L   L K++P+  +  
Sbjct: 162 DFVQLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVT 221

Query: 213 SIR--KFRYRNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
            +R  +  + N  + + N +LNK      +  +DG+KTG+T ++G+    + +  D+ I+
Sbjct: 222 HLRQSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRII 281

Query: 265 AVVMGMPTSQER 276
            VVMG  +  +R
Sbjct: 282 TVVMGTSSKTKR 293


>gi|228939114|ref|ZP_04101709.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228958264|ref|ZP_04119992.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228801423|gb|EEM48312.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228820537|gb|EEM66567.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 309

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 131/243 (53%), Gaps = 16/243 (6%)

Query: 47  ELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E++AK   ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+     + 
Sbjct: 54  EINAK---AAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDPVK 110

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM  K
Sbjct: 111 MSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMDAK 170

Query: 166 AKKIGM-QNTIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--KFRY 219
           AK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R  +  +
Sbjct: 171 AKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLRQSQLAF 230

Query: 220 RNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            N  + + N +LNK      +  +DG+KTG+T ++G+    + +  D+ I+ VVMG  + 
Sbjct: 231 NNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSSK 290

Query: 274 QER 276
            +R
Sbjct: 291 TKR 293


>gi|260888699|ref|ZP_05899962.1| serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena
           ATCC 35185]
 gi|260861568|gb|EEX76068.1| serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena
           ATCC 35185]
          Length = 438

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 123/239 (51%), Gaps = 18/239 (7%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+I+ +  ++   K  D PR+PAS TKMMT  +  E     +  L++ + VS+TAA  
Sbjct: 95  SAILIEASTGRVLYEKAADVPRFPASTTKMMTCVLAIE-----EGDLSSILTVSRTAAET 149

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +++   ++  F   + +  ++ RS N  S A  E ++GS   FA  M+ KAK IG ++
Sbjct: 150 EDTEVGAGDR--FVLAELVAEMMLRSDNGASVAIAEDLAGSVGSFAAHMNEKAKAIGAKD 207

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI--RKFRY------RNRIIT 225
           T + N +GL D   ++TA D A +     KN P++  +     R+  +      R R + 
Sbjct: 208 THFLNPNGLPDPAHVSTAHDIARIAAYGMKN-PKFRSFVGTKEREITWVTPEKKRAR-MA 265

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N+LL+      GIKTGYT  +G  +  S R     ++AVV+G    + R   A +L+
Sbjct: 266 NTNRLLSTYEGATGIKTGYTNAAGGCLAASARRGGVELIAVVLGAADEEARFSDAAKLL 324


>gi|228952354|ref|ZP_04114442.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228807350|gb|EEM53881.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 317

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 131/243 (53%), Gaps = 16/243 (6%)

Query: 47  ELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E++AK   ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+     + 
Sbjct: 62  EINAK---AAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDPVK 118

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM  K
Sbjct: 119 MSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMDAK 178

Query: 166 AKKIGM-QNTIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--KFRY 219
           AK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R  +  +
Sbjct: 179 AKQLKMSEHAKFANASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLRQSQLAF 238

Query: 220 RNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            N  + + N +LNK      +  +DG+KTG+T ++G+    + +  D+ I+ VVMG  + 
Sbjct: 239 NNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSSK 298

Query: 274 QER 276
            +R
Sbjct: 299 TKR 301


>gi|206970894|ref|ZP_03231846.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH1134]
 gi|229109442|ref|ZP_04239036.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock1-15]
 gi|229178383|ref|ZP_04305752.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 172560W]
 gi|206734530|gb|EDZ51700.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH1134]
 gi|228605113|gb|EEK62565.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 172560W]
 gi|228674009|gb|EEL29259.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock1-15]
          Length = 317

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 131/243 (53%), Gaps = 16/243 (6%)

Query: 47  ELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E++AK   ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+     + 
Sbjct: 62  EINAK---AAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDPVK 118

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM  K
Sbjct: 119 MSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMDAK 178

Query: 166 AKKIGM-QNTIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--KFRY 219
           AK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R  +  +
Sbjct: 179 AKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLRQSQLAF 238

Query: 220 RNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            N  + + N +LNK      +  +DG+KTG+T ++G+    + +  D+ I+ VVMG  + 
Sbjct: 239 NNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSSK 298

Query: 274 QER 276
            +R
Sbjct: 299 TKR 301


>gi|328543897|ref|YP_004304006.1| D-alanyl-D-alanine carboxypeptidase family [polymorphum gilvum
           SL003B-26A1]
 gi|326413641|gb|ADZ70704.1| D-alanyl-D-alanine carboxypeptidase family [Polymorphum gilvum
           SL003B-26A1]
          Length = 393

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 111/224 (49%), Gaps = 7/224 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYF 126
           DE   P SL K+MT  ++F+ L+S ++   T   VS+ A     A    S ++   ++  
Sbjct: 59  DEAFAPGSLAKVMTAAVVFDALKSGEVFEETLFKVSEHAWRTGGAPSRTSTMFAAVRSEI 118

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
                +  L+  +AND +    E ++GSE  FA  M+  A +IGM ++ + N +G  D  
Sbjct: 119 PVADLLRGLLVHNANDAAIVLAEGLAGSETAFAQRMTALATRIGMISSRFANPTGFEDPG 178

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII-TNHNKLLNKMHNIDGIKTGYT 245
             TTARD A L   +       Y+ FS+ +F + NRI   N N LL ++  +DG+  G +
Sbjct: 179 NRTTARDMARLAAYILDTHRTRYELFSLPEFTW-NRIFQRNKNPLLGEIRGLDGLGAGLS 237

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           +  G++ + S+      ++AV+ G+ T + R     +L+    E
Sbjct: 238 QADGYSGLASVERDGRRVIAVIAGLDTDKMRLAALRDLVEGAWE 281


>gi|228971991|ref|ZP_04132609.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978601|ref|ZP_04138974.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           Bt407]
 gi|228781097|gb|EEM29302.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           Bt407]
 gi|228787705|gb|EEM35666.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|326939691|gb|AEA15587.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 317

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 131/243 (53%), Gaps = 16/243 (6%)

Query: 47  ELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E++AK   ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+     + 
Sbjct: 62  EINAK---AAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDPVK 118

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM  K
Sbjct: 119 MSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMDAK 178

Query: 166 AKKIGM-QNTIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--KFRY 219
           AK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R  +  +
Sbjct: 179 AKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLRQSQLAF 238

Query: 220 RNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            N  + + N +LNK      +  +DG+KTG+T ++G+    + +  D+ I+ VVMG  + 
Sbjct: 239 NNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSSK 298

Query: 274 QER 276
            +R
Sbjct: 299 TKR 301


>gi|163868321|ref|YP_001609530.1| penicillin-binding protein [Bartonella tribocorum CIP 105476]
 gi|161017977|emb|CAK01535.1| penicillin-binding protein [Bartonella tribocorum CIP 105476]
          Length = 387

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 98/190 (51%), Gaps = 6/190 (3%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYFTTEQ 130
           +PASL K+MT  ++F  L+   L    +  VS+ A     A    + ++ K KT      
Sbjct: 54  FPASLVKLMTAEVVFHQLKEGLLKNTQKFKVSENAWRKGGAPSGTTTMFAKIKTEINISD 113

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  LI  + ND +    E ISG E  FA LM+ +AK IG+  + + NA+GL ++ Q  T
Sbjct: 114 LLRGLIIVNGNDAAIILAEGISGDEDHFAQLMNQRAKIIGLSQSHFVNATGLPEEGQFVT 173

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           ARD  IL   + + +P YY  +    F + N    N N L+ K   ++G  +GY+   GF
Sbjct: 174 ARDMIILARHIVQEYPDYYALYREPHFTWNNIFQRNKNPLIFKEIGVEGFGSGYSEKEGF 233

Query: 251 NIVTSLRYKD 260
           ++V ++ YK+
Sbjct: 234 SMVATI-YKN 242


>gi|229043743|ref|ZP_04191445.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH676]
 gi|228725596|gb|EEL76851.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH676]
          Length = 317

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 131/243 (53%), Gaps = 16/243 (6%)

Query: 47  ELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E++AK   ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+     + 
Sbjct: 62  EINAK---AAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDPVK 118

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM  K
Sbjct: 119 MSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMDAK 178

Query: 166 AKKIGM-QNTIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--KFRY 219
           AK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R  +  +
Sbjct: 179 AKQLKMSEHAKFANASGLQEPDGSETKMTATDVAQLAYHLIKDYPEILEVTHLRQSQLAF 238

Query: 220 RNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            N  + + N +LNK      +  +DG+KTG+T ++G+    + +  D+ I+ VVMG  + 
Sbjct: 239 NNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSSK 298

Query: 274 QER 276
            +R
Sbjct: 299 TKR 301


>gi|229127385|ref|ZP_04256380.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           BDRD-Cer4]
 gi|229144594|ref|ZP_04272996.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           BDRD-ST24]
 gi|296502572|ref|YP_003664272.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
 gi|228638834|gb|EEK95262.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           BDRD-ST24]
 gi|228656067|gb|EEL11910.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           BDRD-Cer4]
 gi|296323624|gb|ADH06552.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
          Length = 317

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 131/243 (53%), Gaps = 16/243 (6%)

Query: 47  ELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E++AK   ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+     + 
Sbjct: 62  EINAK---AAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDPVK 118

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM  K
Sbjct: 119 MSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMDAK 178

Query: 166 AKKIGM-QNTIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--KFRY 219
           AK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R  +  +
Sbjct: 179 AKQLKMSEHAKFANASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLRQSQLAF 238

Query: 220 RNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            N  + + N +LNK      +  +DG+KTG+T ++G+    + +  D+ I+ VVMG  + 
Sbjct: 239 NNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSSK 298

Query: 274 QER 276
            +R
Sbjct: 299 TKR 301


>gi|51892953|ref|YP_075644.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51856642|dbj|BAD40800.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 403

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 121/220 (55%), Gaps = 8/220 (3%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           E R PAS+TK+MTL + F+ ++  K+ L   + +S+ A  Q  + ++      F+ E+ +
Sbjct: 69  ERRNPASVTKIMTLIVAFDAIRDGKVSLKDPVTISEEAKRQPGTTIFADVGETFSLEELL 128

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           L++   SAND + A  E ++GS   F  LM+ KAK++GM +T + N +GL  +   +TA 
Sbjct: 129 LSVAVGSANDAAVAVAEHVAGSVDAFVALMNKKAKELGMNDTQFMNPTGLSAEGHYSTAY 188

Query: 193 DQAILGILLRKNFPQYYK----YFSIRKFRYRNRI----ITNHNKLLNKMHNIDGIKTGY 244
           D A++      ++P+  K    Y +     +R       + N+NKLL      DG+KTG+
Sbjct: 189 DIALMSRHAVLHYPELVKLTAIYGAELNVPWRKNGPKFQLWNNNKLLTWYPGADGLKTGW 248

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           T+ +G+ +  +    +  ++AVVMG  ++++R+ +   L+
Sbjct: 249 TQAAGYCLAATAVQNNTRMIAVVMGAESAKQRNIEVARLL 288


>gi|229069527|ref|ZP_04202816.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus F65185]
 gi|228713666|gb|EEL65552.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus F65185]
          Length = 309

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 131/243 (53%), Gaps = 16/243 (6%)

Query: 47  ELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E++AK   ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+     + 
Sbjct: 54  EINAK---AAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDPVK 110

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM  K
Sbjct: 111 MSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMDAK 170

Query: 166 AKKIGM-QNTIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--KFRY 219
           AK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R  +  +
Sbjct: 171 AKQLKMSEHAKFANASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLRQSQLAF 230

Query: 220 RNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            N  + + N +LNK      +  +DG+KTG+T ++G+    + +  D+ I+ VVMG  + 
Sbjct: 231 NNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSSK 290

Query: 274 QER 276
            +R
Sbjct: 291 TKR 293


>gi|295696423|ref|YP_003589661.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           tusciae DSM 2912]
 gi|295412025|gb|ADG06517.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           tusciae DSM 2912]
          Length = 366

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 132/260 (50%), Gaps = 24/260 (9%)

Query: 30  LMGKIL--FLSIIMI---------SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP- 77
           + G++L  F+++ MI         + + +L+      + V+DV   ++   K  +   P 
Sbjct: 1   MAGRVLAGFVAVTMILFPGVGAAAANSPDLYGISAQGAAVVDVGSGRVLYEKNGDQMMPI 60

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK++T ++  E  +     L+ ++ +S  AA +  S +YL+    +T    + A++ 
Sbjct: 61  ASLTKIVTGWLAVESGR-----LDERVTISANAARKEGSSVYLRAGETYTLRDLVYAMML 115

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           RS ND +TA  E ++GSE +FA LM+ KA+++G+++  + N  GL       +A D A +
Sbjct: 116 RSGNDAATAVAEHLAGSEARFAALMNAKAREMGLRHVHFANPHGLDAPGHGASAVDLARM 175

Query: 198 GILLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
                +N P++      +  R        +R++ N NK+L +    DG+KTGYT+ +G  
Sbjct: 176 TAKALQN-PEFAAVVRTKYHRMPWPGEAWDRVMRNKNKMLWRYPGADGVKTGYTKRAGRC 234

Query: 252 IVTSLRYKDDPIVAVVMGMP 271
           + +S       +V VV+  P
Sbjct: 235 LASSATRDGHQVVVVVLKDP 254


>gi|30020090|ref|NP_831721.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
 gi|29895640|gb|AAP08922.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
          Length = 279

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 131/243 (53%), Gaps = 16/243 (6%)

Query: 47  ELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E++AK   ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+     + 
Sbjct: 24  EINAK---AAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDPVK 80

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM  K
Sbjct: 81  MSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMDAK 140

Query: 166 AKKIGM-QNTIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--KFRY 219
           AK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R  +  +
Sbjct: 141 AKQLKMSEHAKFANASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLRQSQLAF 200

Query: 220 RNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            N  + + N +LNK      +  +DG+KTG+T ++G+    + +  D+ I+ VVMG  + 
Sbjct: 201 NNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSSK 260

Query: 274 QER 276
            +R
Sbjct: 261 TKR 263


>gi|85374069|ref|YP_458131.1| D-alanyl-D-alanine carboxypeptidase [Erythrobacter litoralis
           HTCC2594]
 gi|84787152|gb|ABC63334.1| D-alanyl-D-alanine carboxypeptidase [Erythrobacter litoralis
           HTCC2594]
          Length = 347

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 111/234 (47%), Gaps = 6/234 (2%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-- 113
           +++D+   Q    +  + R+ PAS+TK+MT Y  FE ++  KL   T+   S+ AA +  
Sbjct: 1   MLVDMASGQTLYARNPDRRFVPASITKVMTAYTAFELMKQGKLAPGTRFTFSEAAADEWY 60

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S ++L   +       ++ + T SAND S    E  +GS   +  LM+  A  +GM 
Sbjct: 61  RTGSTMFLDRGSETAVTDLLMGITTVSANDGSIVLAEGAAGSVDNWLDLMNAHADALGMH 120

Query: 173 NTIYKNASGLHDKNQ-ITTARDQAILGILLRKNFPQYY-KYFSIRKFRYRNRIITNHNKL 230
            + +   +G  D+ +  TTARD   L   L    P  Y +YF  R  R       N++ +
Sbjct: 121 QSHFGTPNGWPDEGRTFTTARDLVTLAKALITEHPGLYARYFGHRGLRTNGIAQDNYDPI 180

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
             ++   DGIKTG+T  +G+  + S       +V VV   P  + RD+ A  L+
Sbjct: 181 TGRIEGADGIKTGFTNQAGWGFLGSAERDGRRLVMVVAASPGMRSRDETARALM 234


>gi|330839897|ref|YP_004414477.1| Serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena
           ATCC 35185]
 gi|329747661|gb|AEC01018.1| Serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena
           ATCC 35185]
          Length = 376

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 123/239 (51%), Gaps = 18/239 (7%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+I+ +  ++   K  D PR+PAS TKMMT  +  E     +  L++ + VS+TAA  
Sbjct: 33  SAILIEASTGRVLYEKAADVPRFPASTTKMMTCVLAIE-----EGDLSSILTVSRTAAET 87

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +++   ++  F   + +  ++ RS N  S A  E ++GS   FA  M+ KAK IG ++
Sbjct: 88  EDTEVGAGDR--FVLAELVAEMMLRSDNGASVAIAEDLAGSVGSFAAHMNEKAKAIGAKD 145

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI--RKFRY------RNRIIT 225
           T + N +GL D   ++TA D A +     KN P++  +     R+  +      R R + 
Sbjct: 146 THFLNPNGLPDPAHVSTAHDIARIAAYGMKN-PKFRSFVGTKEREITWVTPEKKRAR-MA 203

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N+LL+      GIKTGYT  +G  +  S R     ++AVV+G    + R   A +L+
Sbjct: 204 NTNRLLSTYEGATGIKTGYTNAAGGCLAASARRGGVELIAVVLGAADEEARFSDAAKLL 262


>gi|229190080|ref|ZP_04317086.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus ATCC
           10876]
 gi|228593409|gb|EEK51222.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus ATCC
           10876]
          Length = 317

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 130/243 (53%), Gaps = 16/243 (6%)

Query: 47  ELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E++AK   ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+     + 
Sbjct: 62  EINAK---AAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDSVK 118

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM  K
Sbjct: 119 MSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMDAK 178

Query: 166 AKKIGM-QNTIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--KFRY 219
           AK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R  +  +
Sbjct: 179 AKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLRQSQLAF 238

Query: 220 RNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            N  + + N +LNK      +  +DG+KTG+T ++G+    + +  D+ I+ VVMG    
Sbjct: 239 NNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSNK 298

Query: 274 QER 276
            +R
Sbjct: 299 TKR 301


>gi|190576060|ref|YP_001973905.1| putative family S11 unassigned peptidase [Stenotrophomonas
           maltophilia K279a]
 gi|190013982|emb|CAQ47622.1| putative family S11 unassigned peptidase [Stenotrophomonas
           maltophilia K279a]
          Length = 264

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 119/244 (48%), Gaps = 11/244 (4%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           M S   A+   SSI +D     +      D  R PASLTK+MT Y  +E ++ +      
Sbjct: 1   MPSPAPARAPLSSITLDAATFAVIHQHNADIARQPASLTKLMTAYAAYECVEERGRSWGD 60

Query: 103 QIPVSKT---AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           ++ ++     A   + +++ L      T  + +  L+  S ND + A    + GS+  F 
Sbjct: 61  EVTIAADDVHAVADDETRMGLVPGETVTLARLLEGLMIVSGNDAALAIARHLDGSQPAFL 120

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             M+  A+++G++++ + + SG+   +  ++ARD A+L   L  + PQ     + R F +
Sbjct: 121 ERMNRHARQLGLRSSWFASVSGITTPHHASSARDMAVLAACLLNDHPQILAITAQRAFVH 180

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI-VTSLRY---KDDPI--VAVVMGMPTS 273
            +    N N LL     +DG+KTGYT+ +GF +  T+ R    +D P+  + VV+G  + 
Sbjct: 181 GSFSRNNQNALLGD-DGVDGLKTGYTQAAGFCLAATACRAVPGRDQPVRLITVVLGSESR 239

Query: 274 QERD 277
             RD
Sbjct: 240 DARD 243


>gi|297569645|ref|YP_003690989.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925560|gb|ADH86370.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 365

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 116/225 (51%), Gaps = 12/225 (5%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D    ++      D+PR PAS  K++T  I  + L+ ++L     +  S  AA  
Sbjct: 97  SAVVVDPTTGRLLFALNPDQPRQPASTIKIVTALIAMQSLRDQEL-----VSTSARAARM 151

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             SK+YL+    +     I A +  SAND S A  E I+GSE  FA LM++KA+ +G  N
Sbjct: 152 PRSKIYLQAGRSYRAGDLINATLLSSANDASVALAERIAGSEAAFARLMTSKARAMGATN 211

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYR-NRIITNHNKL 230
           T+  N++GL  + Q +TARD   L I+L ++   P++ +            + +  +N+ 
Sbjct: 212 TVIHNSNGLTARGQQSTARD---LAIILHRSMQNPEFARRLGTTSASTNFGQTLRTNNRA 268

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           L +++  +G KTG+TR +    V   +  +  ++  +MG  T  E
Sbjct: 269 LWQINGAEGGKTGFTRAARQTYVGKFKRGNQELIVALMGSDTMWE 313


>gi|150396511|ref|YP_001326978.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae
           WSM419]
 gi|150028026|gb|ABR60143.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae
           WSM419]
          Length = 384

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 114/237 (48%), Gaps = 9/237 (3%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTY 125
           +D P  PASL K+M + ++FE L   +L  +T   VS+ A     A    S ++   K+ 
Sbjct: 50  EDAPVPPASLAKLMAMKVVFEALDKGELTPDTNFLVSEHAWRTGGAPSGTSTMFAAIKSR 109

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
                 I     + AND      E ++GSE  FA  M+ +A++IG+    +KNA+GL   
Sbjct: 110 IRVADLIQGATVQLANDACIILAEGMAGSEPAFAERMTKRAREIGLPVATFKNATGLPHP 169

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
               T R+   L   L +  P YY  +S  +F +   +  N N L+     +DG+ TG+ 
Sbjct: 170 GNTITMRELVALARHLYEAHPNYYPLYSQPEFEWNKILQRNKNPLIAAKIGVDGLATGFA 229

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI----TSFLEKKTLKHQQT 298
              GF++  S++  +  +   + G+ + +ER +++  ++    T+F +++     +T
Sbjct: 230 EGFGFSVAASMQRGERRVYLAMSGLESEKERIEESRRVLDWAMTAFEKRRIFSDGET 286


>gi|237749357|ref|ZP_04579837.1| penicillin-binding protein 6. serine peptidase. merops family s11
           [Oxalobacter formigenes OXCC13]
 gi|229380719|gb|EEO30810.1| penicillin-binding protein 6. serine peptidase. merops family s11
           [Oxalobacter formigenes OXCC13]
          Length = 397

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 125/238 (52%), Gaps = 11/238 (4%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPASL-TKMMTLYIIFEYLQSKKLHLNTQIPVSK--TAA 111
           S ++IDV  NQ+      + R  A    ++MT Y++F  ++  KL+L+  + VS    A 
Sbjct: 50  SWLLIDVVSNQVLASSNSQERIRAGTPARLMTAYLVFGAIKDGKLNLDKTVSVSDEIGAM 109

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                +++L+  +  T +Q +  LI + + D +      +SG EK F  LM+ +A ++GM
Sbjct: 110 ESGGPRMFLQPGSSVTIQQLLDGLIVQGSEDAALTLALAVSGDEKSFVDLMNREAVRLGM 169

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T + +     DK+  +T  D ++L + L +++P YY  FS R+F Y      N N+LL
Sbjct: 170 KSTNFTHPYETADKDSYSTPNDLSVLAVNLMRDYPDYYSGFSTREFTYNKITQRNPNRLL 229

Query: 232 NKMHNIDG-IKTGYTRNSGFNIVTSLR----YKDDPIVAVVMGMPTSQERDQKALELI 284
                +DG + +   R+S   +V S R      +  +++VV+G  + Q R Q++L+L+
Sbjct: 230 WVDPTVDGLVASAGVRDS---MVVSARRDSILGERRMLSVVVGAVSDQARAQESLKLL 284


>gi|147678211|ref|YP_001212426.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum
           thermopropionicum SI]
 gi|146274308|dbj|BAF60057.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum
           thermopropionicum SI]
          Length = 407

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 111/222 (50%), Gaps = 15/222 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR--YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +++VID+   Q+  F+++  R  YPAS TK+MT  I  E        L+  + V   A  
Sbjct: 35  AAVVIDIKNGQVL-FEKNPDRRVYPASTTKIMTAVIALE-----NGRLDAAVAVPGEACN 88

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S + L+E    + E  + AL+  S ND + A    + GS + F  +M+ KA ++G  
Sbjct: 89  IEGSSIGLQEGEKISLEDLLYALMLNSGNDTAVAIACHVGGSVEAFVSMMNKKAAELGAV 148

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI------ITN 226
           NT + N +GL D    +TA D A++     +N P++ K  S R    R  +      + N
Sbjct: 149 NTHFNNPNGLPDPGHYSTAYDMALISRYAMQN-PEFRKIVSTRVKTIRRSVPDAQVYLEN 207

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           HN+LL       G+KTGYT  +G  +V+S   +   ++AVVM
Sbjct: 208 HNRLLWLYEGATGVKTGYTVEAGQCLVSSAARQGRELLAVVM 249


>gi|307267584|ref|ZP_07549057.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306917391|gb|EFN47692.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 427

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 98/312 (31%), Positives = 152/312 (48%), Gaps = 33/312 (10%)

Query: 34  ILFLSIIMISMAS-ELHAK--PKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTL 86
           IL+L I++  M+S +++A+  P  S+   IV+D    ++   K    + P AS TK+MTL
Sbjct: 53  ILYLFILLYFMSSVKVYAESYPSISAKAAIVMDQETGRVLYEKNSHEKLPMASTTKIMTL 112

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            +  E     K +LN  + VSK AA+   S ++L        E  +  L+  S ND +TA
Sbjct: 113 LVALE-----KGNLNDIVTVSKRAASVGGSSIWLSPGEKIDMESLLYGLMLNSGNDAATA 167

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILGILLRKN 204
             E I GS + F  +M+ KAK+IG  NT +   SGL     +  TTA D   L ++ R  
Sbjct: 168 IAEHIGGSVESFVEIMNQKAKEIGAYNTHFVTPSGLDIGIDDHYTTAYD---LALITRYA 224

Query: 205 F--PQYYKYFSIR------KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           F  P++ +  S +      + +  +R + N NKLL      DG+KTG+T  +G  +V+S 
Sbjct: 225 FRYPKFTEIVSTKEKTIPWEGKEWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVSSA 284

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITS------FLEKKTL--KHQQTHRKDNLSSTS 308
             +    +AVV+  P   E   K L+   S       LEK  L  K +    K+N  S  
Sbjct: 285 TREGRRFIAVVLNSPPMWEDSMKILDYAFSKYKPYKVLEKGELIKKVKVEGGKENTVSVV 344

Query: 309 LKKSLMIKKLKR 320
            +K+ +I  L+ 
Sbjct: 345 SEKACVIPALEE 356


>gi|281357416|ref|ZP_06243904.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Victivallis
           vadensis ATCC BAA-548]
 gi|281316019|gb|EFB00045.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Victivallis
           vadensis ATCC BAA-548]
          Length = 391

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 125/241 (51%), Gaps = 12/241 (4%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ-SKKLHLNTQIPVSKTA-A 111
           S I++D+    +   K    + P AS+ KMMTL + FE L+ +  + L + + ++KTA A
Sbjct: 141 SGIMVDLTTRNVLWEKNSTAKVPIASMVKMMTLLVTFEELEKNPAISLESPVQITKTALA 200

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                 ++L  +  F     + A+  +SAND +    EFI G    F   M+ +A+ +GM
Sbjct: 201 VPRTGVVWLDPRETFPLSDLLKAVTIKSANDAAVQVAEFIGGDVDSFVNRMNLRAQTLGM 260

Query: 172 QNTIYKNASGLHDK---NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN----RII 224
            N+ + +  GL DK   N ++ ARD  +L   L + +P   ++ + ++   R      ++
Sbjct: 261 TNSHFVSPCGLPDKKKGNSLSCARDMVVLAEQLLE-YPDVMRWSTTKQDFIREGEKKTML 319

Query: 225 TNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           T  NKL+N +   +DG+KTG+   SG+ +  S+      IV  V G  ++++RD+ + +L
Sbjct: 320 TTTNKLVNPRWPGVDGLKTGFINASGYCLTFSVLRDGRRIVGCVTGFKSARDRDRFSRKL 379

Query: 284 I 284
           I
Sbjct: 380 I 380


>gi|319404207|emb|CBI77800.1| Penicillin-binding protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 390

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 140/280 (50%), Gaps = 17/280 (6%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSS-----IVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           L+ K+LF S+I I + +E     K+ +     +++D N + +   KQ D   +PASL K+
Sbjct: 3   LLLKVLF-SLIWILIFNEQGQTKKFQTSALQLLILDDNTDTILFEKQSDIVFFPASLAKL 61

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           MT  ++F  L+   L+   +  VS+ A     A    + ++ KEKT  +    +  L+  
Sbjct: 62  MTAEVVFYQLKKGFLNKTQKFKVSENAWRKGGAPSGTTTMFAKEKTEISIFDLLHGLVIV 121

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           + ND +    E I+G+E  FA LM+ +AK +G+ ++ + NA+GL +K Q TT RD   L 
Sbjct: 122 NGNDAAVILAEGIAGNEANFAKLMNKRAKTLGLLHSHFVNATGLPEKGQFTTLRDIITLV 181

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN--IDGIKTGYTRNSGFNIVTSL 256
             + + +P YY  +    F +      N N L+ + ++  I+G+  GY+   GF+ V S 
Sbjct: 182 RHIAREYPDYYALYREPNFTWNKITQRNKNSLIFQENDVKIEGLGFGYSEEVGFSTVISA 241

Query: 257 RYKDDPIVAVVMGMPTSQERDQKA---LELITSFLEKKTL 293
                 I   + G+   QER ++    LE   +  + KT+
Sbjct: 242 YNNQQRIFLAINGLQNKQERTKEVKRILEWAMTAFDLKTV 281


>gi|304407580|ref|ZP_07389232.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           curdlanolyticus YK9]
 gi|304343531|gb|EFM09373.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           curdlanolyticus YK9]
          Length = 326

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 120/247 (48%), Gaps = 26/247 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY--PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S+I+ID N  Q T F Q   +   PAS++K+MT  ++ E +++ KL    Q+ VS  AA 
Sbjct: 41  SAILIDANTGQ-TIFAQGANKALPPASMSKLMTELVVLETVRAGKLGWKDQVTVSPYAAN 99

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              +   L+     T ++   ++   SAND + A  E+I GSE++F  LM+ KAK IG+ 
Sbjct: 100 VLGAGAGLRNGERHTVKELFESMAVHSANDSAVALAEWIGGSEREFVKLMNEKAKAIGLS 159

Query: 173 N-TIYKNASGLH-------------DKNQITTARDQAILGILLRKNFPQYY-----KYFS 213
           + T++ NA+GL              D   + TARD A+L   + +++P+       +   
Sbjct: 160 DSTVFANATGLSSSDLAMYAQSAAADGETVMTARDVALLARYMIRSYPEVLTITSREAVG 219

Query: 214 IRKFRYRNRIITNHNKLLNKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           +      +  +   N +L          DG+KTGYT  +G+    +       ++AVVMG
Sbjct: 220 LNPGASDDAALRTTNLMLPGERFAYPGSDGLKTGYTERAGYCFTGTTSRGGTRLIAVVMG 279

Query: 270 MPTSQER 276
             ++  R
Sbjct: 280 AESADGR 286


>gi|257470787|ref|ZP_05634877.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium ulcerans ATCC
           49185]
 gi|317064992|ref|ZP_07929477.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium ulcerans ATCC
           49185]
 gi|313690668|gb|EFS27503.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium ulcerans ATCC
           49185]
          Length = 376

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/277 (31%), Positives = 143/277 (51%), Gaps = 24/277 (8%)

Query: 34  ILFLSIIMISMASELHAK----------PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           +L L+I++IS  S + AK          P Y +I++  +K ++   +  + +YP ASLTK
Sbjct: 7   VLLLAIVLIS--STVFAKDSETLMKEETPSYKAILLGDDKGKIYYSENIDEKYPLASLTK 64

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           MMTL + F+ L+   + +  +I VSK +A    S++++KE   FT E  I A    SAN+
Sbjct: 65  MMTLMVTFDQLEKGNIKMKDKIKVSKKSAQTGGSRIFMKEGDVFTLEDLIKATAIYSANN 124

Query: 143 VSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTI-YKNASGLHD---KNQITTARDQAIL 197
            + A  E+I  G   KF  +M+ K+  +G++  + +   +GL     K  +     + I 
Sbjct: 125 AAYAIAEYIGKGDVDKFVKMMNKKSADLGLEKELEFYTPAGLPSDMTKKGMDAGTTRGIY 184

Query: 198 GI-LLRKNFPQYYKYFSIRKFRYRNR--IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
            + L    + +Y +  SI++    N    I N N LL +   I GIKTG+    G+NI +
Sbjct: 185 KLSLAAAKYNKYMEIASIKETTIHNGKLKIKNRNLLLGE-EGIYGIKTGHHSKVGYNI-S 242

Query: 255 SLRYKDD-PIVAVVMGMPTSQERDQKALELITSFLEK 290
            L  KD+  I  VV+G PT Q+RD+  L  +  F E+
Sbjct: 243 VLSDKDNMKIFTVVVGGPTYQKRDESVLNQMEEFYEE 279


>gi|213582478|ref|ZP_03364304.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 242

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 113/221 (51%), Gaps = 8/221 (3%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           L+   +S A +  A    + +++D    Q +T   + + R PASLTK+MT Y++   + S
Sbjct: 22  LAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDS 81

Query: 96  KKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            ++  +  + V + A A  NP     S ++LKE    +       LI  S ND   A  +
Sbjct: 82  HRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALAD 141

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
           +I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D A+L   +    P++Y
Sbjct: 142 YIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFY 201

Query: 210 KYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSG 249
             +S +   +      N N LL +K  +IDG+KTG+T  +G
Sbjct: 202 HMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAG 242


>gi|319898924|ref|YP_004159017.1| Penicillin-binding protein [Bartonella clarridgeiae 73]
 gi|319402888|emb|CBI76439.1| Penicillin-binding protein [Bartonella clarridgeiae 73]
          Length = 394

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 133/262 (50%), Gaps = 18/262 (6%)

Query: 33  KILFLSIIMISMASELHAKPKYSS-----IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           ++LF S+I I + +E      + +     ++ D N + +   KQ D   +PASLTK+MT 
Sbjct: 6   RVLF-SLIWILIFNEQGQAENFQTSASQLLIFDDNTSTILFKKQSDVAFFPASLTKLMTA 64

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
            I+F  L+   L+   +  VS+ A     A    + ++ KEKT  +    +  L+  + N
Sbjct: 65  EIVFHQLKKGFLNKEQKFKVSENAWRKGGAPSGTTTMFAKEKTEISVFDLLRGLVIVNGN 124

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D +    E I+G+E  FA LM+ +AK +G+ N+ + NA+G  ++ Q  T  D   L   +
Sbjct: 125 DAAITLAEGIAGNEANFAKLMNKRAKTLGLLNSHFVNATGFPEEGQFITLNDMITLARHI 184

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNK--LLNKMHN--IDGIKTGYTRNSGFNIVTSLR 257
              +P YY  +S   F +    IT HNK  L++++ +  I+G+  GY+  +GF+ V S  
Sbjct: 185 AHEYPDYYALYSEPDFTWNK--ITQHNKNPLISQVTDVKIEGLGFGYSEETGFSTVISAY 242

Query: 258 YKDDPIVAVVMGMPTSQERDQK 279
                +   V G+  ++ER ++
Sbjct: 243 KNQQRLFLAVSGLQNNKERTKE 264


>gi|302392427|ref|YP_003828247.1| serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum
           DSM 5501]
 gi|302204504|gb|ADL13182.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum
           DSM 5501]
          Length = 383

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 119/234 (50%), Gaps = 16/234 (6%)

Query: 45  ASELHAKPKY---SSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           A  + AKP     S+IV+DV   ++   K   E R PAS TK+MT  +  E       +L
Sbjct: 23  ADIVSAKPDITARSAIVVDVKTGEVLYAKNHHERRPPASTTKIMTGILAIE-----NGNL 77

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
           +T++ VS  AA    S ++L        E+ +  L+  S ND + A  E I GS + FA 
Sbjct: 78  DTEVTVSDRAAYTGGSSIWLTSGETLKLEELLYGLLLNSGNDAAVAIAEHIGGSVEGFAW 137

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG--ILLRKNFPQYY----KYFSI 214
           +M+ KA++IG  NT ++N +GL     +TTA D A++    L    F +      K  S 
Sbjct: 138 MMNRKAREIGALNTTFQNPNGLPQNGHLTTAYDLALITRYALQNDTFAKIVRTVRKTISW 197

Query: 215 RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
               Y  R + N N+LL K   +DG+KTGYT  +G  +V++    +  +V+VV+
Sbjct: 198 EGHEY-GRSLLNTNRLLRKFDKVDGVKTGYTDAAGRCLVSAASADNRQVVSVVL 250


>gi|325292852|ref|YP_004278716.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3]
 gi|325060705|gb|ADY64396.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3]
          Length = 390

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 96/185 (51%), Gaps = 9/185 (4%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYFTTEQG 131
           PASL K+MT+ +I + L   ++   T  PVS+ A     A    S ++   K+  +    
Sbjct: 64  PASLAKLMTVEVILDALAKGQVTPETAYPVSEYAWRTGGAPSRTSTMFAALKSSVSVNDL 123

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +I ++AND      E ++GS+  FA  M+ +A ++GM  +++ N++GL D    TTA
Sbjct: 124 LTGIIVQNANDGCIIVAEGMAGSDSAFAKRMTVRAGELGMNRSVFANSTGLPDPGNQTTA 183

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT-NHNKLLNKMHNIDGIKTGYTRNSGF 250
           +D  +L   LR  +P  Y  F+   F + NRI   N N LL   + IDG+  G+   SGF
Sbjct: 184 KDMVLLAQHLRDTYPDRYGLFTKPDFEW-NRIFQRNKNSLLG--NGIDGLGLGFAEGSGF 240

Query: 251 NIVTS 255
             V S
Sbjct: 241 AAVVS 245


>gi|225175400|ref|ZP_03729395.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
           AHT 1]
 gi|225169152|gb|EEG77951.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
           AHT 1]
          Length = 426

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/267 (31%), Positives = 137/267 (51%), Gaps = 28/267 (10%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQD--EPRYPASLTK 82
           I L+  +++L I  ++  +E  A P+ +S   ++ID    Q+  F+++  +  YPAS+TK
Sbjct: 10  ILLVVSLIYLLINPVATWAETTAFPELNSQAAVLIDAQTGQVL-FEKNMHQVLYPASITK 68

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGILALITRS 139
           +MT  I  E     + +L+  I +S+ A     +N S + L      T EQ + AL   S
Sbjct: 69  IMTGIIALE-----EGNLDDTITMSREAVFSIGRNTSHVALDVDEELTLEQALYALAIES 123

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND +    E ISG  + FA LM+ +A + G +NT + NA GL D +  TTA D A++  
Sbjct: 124 GNDAANGIAEHISGDVESFAQLMNKRAAEYGAKNTNFTNAHGLPDSDHYTTAYDMALILK 183

Query: 200 LLRKNFPQYYKYFSIRKFRY-------RNRIITNHNKLLNKMH---NIDGIKTGYTRNSG 249
              KN P + + FS R +          +R   N N LL+  +    I   KTG+T  +G
Sbjct: 184 QAVKN-PAFREIFSARNYEMPPTNKQPESRHFRNRNSLLSGRYEDAEILASKTGWTTLAG 242

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQER 276
             +VT+ R ++  ++AVV+    SQ+R
Sbjct: 243 HTLVTAARQENRELIAVVLN---SQDR 266


>gi|229102587|ref|ZP_04233291.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-28]
 gi|228680814|gb|EEL34987.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-28]
          Length = 317

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 127/235 (54%), Gaps = 13/235 (5%)

Query: 55  SSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++++ID  N + +    ++E   PAS++KMMT Y++ E + + K+     + +S+ AA  
Sbjct: 67  AAMIIDASNGDVIYQHNENEAFAPASMSKMMTAYLLLESVHNGKVRWEDPVKMSEKAAQT 126

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM-Q 172
             +++ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM+ KAK++ M +
Sbjct: 127 EGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFVQLMNAKAKQLEMSE 186

Query: 173 NTIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIITNH 227
           +  + NASGL + +      TA D A L   L K++P+  +   +R  +  + N  + + 
Sbjct: 187 HAKFANASGLQEPDGSETKMTAADVAKLAYHLIKDYPEILEVTHLRQSQLAFNNVNVIST 246

Query: 228 NKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           N +LNK      +  IDG+KTG+T ++G+    + +  D  I+ VVMG  +  +R
Sbjct: 247 NDMLNKNNKSLYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGTSSKTKR 301


>gi|153811609|ref|ZP_01964277.1| hypothetical protein RUMOBE_02001 [Ruminococcus obeum ATCC 29174]
 gi|149832350|gb|EDM87435.1| hypothetical protein RUMOBE_02001 [Ruminococcus obeum ATCC 29174]
          Length = 414

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 126/240 (52%), Gaps = 16/240 (6%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ-SKKLHLNTQIPVSKTAAT 112
           S+I++D+    +   K  D+ +YPAS+TK+MT  +  E L  S+K  +      +++   
Sbjct: 75  SAILVDMFTGAVLYSKNADKTQYPASITKIMTALLGCEKLNPSQKFAMTAS--AARSITE 132

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
            N S +Y      FT EQ ++A++ +SAN+++ A  E  SGS KKF   M+ KA+++G  
Sbjct: 133 TNSSSIYADTDEEFTIEQALMAVMLQSANEMTLAVAELTSGSTKKFVEQMNLKARQLGCT 192

Query: 173 NTIYKNASGLHDKNQITTARDQAIL--GILLRKNF-----PQYYKYFSIRKFRYRNRIIT 225
           NT + N +GL D+   TTA D A +         F      QYY+     KF    R + 
Sbjct: 193 NTHFNNPNGLPDEIHYTTASDMAKIARAAWFNPTFRKFASTQYYEIPPTNKFA-ETRYLL 251

Query: 226 NHNKLL-NKMHNIDGI---KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           NH+K++ N+ +  +G+   KTGYT  +G  +VT  +  +  +V+VV+        D KAL
Sbjct: 252 NHHKMMKNQAYAYNGVLGGKTGYTEAAGNTLVTYAKNDNTYLVSVVLQSVNGAYSDTKAL 311


>gi|253580937|ref|ZP_04858199.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847779|gb|EES75747.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 411

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 114/207 (55%), Gaps = 20/207 (9%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGI 132
           YPAS+TK+MT  +  EYL     +++  I +S+ AA       S +Y +    FT EQ +
Sbjct: 91  YPASITKIMTALLACEYL-----NMDDTITMSQEAAYGIEAGSSSIYAETGEVFTVEQAL 145

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           +AL+  SAN+++ A  E  SGS KKF  LM+ +A ++G +NT + N +GL D+   TTA 
Sbjct: 146 MALMLESANEMALALAEKTSGSVKKFVELMNQRAAQLGCKNTHFNNPNGLPDETHYTTAG 205

Query: 193 DQAILGILLRKNFPQYYKYFSIRKF-------RYRNRIITNHNKLL-NKMHNIDGI---K 241
           D   +      N P++ K+ + + +       +   R + NH+K++  + +  DG+   K
Sbjct: 206 DMMKIAKAAWYN-PRFRKFVTTQVYEIPPTNKQSETRYLLNHHKMMPGQSYAYDGVLGGK 264

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           TGYT  +G  +VT  +  +  ++AVV+
Sbjct: 265 TGYTDAAGSTLVTYAKRGNSILIAVVL 291


>gi|228920684|ref|ZP_04084027.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228838985|gb|EEM84283.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 309

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 130/243 (53%), Gaps = 16/243 (6%)

Query: 47  ELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E++AK   ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+     + 
Sbjct: 54  EINAK---AAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDPVK 110

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM  K
Sbjct: 111 MSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMDAK 170

Query: 166 AKKIGM-QNTIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--KFRY 219
           AK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R  +  +
Sbjct: 171 AKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLRQSQLAF 230

Query: 220 RNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            N  + + N +LN+      +  +DG+KTG+T ++G+    + +  D+ I+ VVMG    
Sbjct: 231 NNINVISTNDMLNRNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSNK 290

Query: 274 QER 276
            +R
Sbjct: 291 TKR 293


>gi|332798926|ref|YP_004460425.1| Serine-type D-Ala-D-Ala carboxypeptidase [Tepidanaerobacter sp.
           Re1]
 gi|332696661|gb|AEE91118.1| Serine-type D-Ala-D-Ala carboxypeptidase [Tepidanaerobacter sp.
           Re1]
          Length = 415

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 124/247 (50%), Gaps = 18/247 (7%)

Query: 35  LFLSIIMISMAS---ELHAKPKYSS---IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLY 87
           LF  +I IS A+   +  + P  S    I+ID +  ++   K    R  PAS TK+MT  
Sbjct: 17  LFSFLIPISFANGAEQTESLPSISGETGILIDASTGKVLYEKNAYTRMEPASTTKIMTAI 76

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           +  E     K +L+  +   K     + +++YL+E    T EQ +  ++  S ND + A 
Sbjct: 77  LALE-----KGNLSDVVTTGKQPTLADGTRIYLEEGEQLTLEQMLYGMMLNSGNDAAIAI 131

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E I GS + F  +M+ KA++IG ++T + N +GL  K  +TTA D A++      N P+
Sbjct: 132 AEHIGGSVEAFVEMMNEKAREIGAKDTTFVNPNGLPAKGHLTTAYDLALISRYALLNLPE 191

Query: 208 YYKYFSIR------KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           + K  S +      + +  +R + N NKLL      DG+KTGYT  +G  +V S      
Sbjct: 192 FRKIVSTKNAEIPWQAQDSDRQLINLNKLLWNYEGADGVKTGYTSTAGSTLVASATRNGW 251

Query: 262 PIVAVVM 268
            +++V++
Sbjct: 252 QLISVIL 258


>gi|229096494|ref|ZP_04227465.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-29]
 gi|229115468|ref|ZP_04244874.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock1-3]
 gi|228667881|gb|EEL23317.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock1-3]
 gi|228686700|gb|EEL40607.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-29]
          Length = 317

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 127/235 (54%), Gaps = 13/235 (5%)

Query: 55  SSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++++ID  N + +    ++E   PAS++KMMT Y++ E + + K+     + +S+ AA  
Sbjct: 67  AAMIIDASNGDVIYQHNENEAFAPASMSKMMTAYLLLESVHNGKVRWEDPVKMSEKAAQT 126

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM-Q 172
             +++ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM+ KAK++ M +
Sbjct: 127 EGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFVQLMNAKAKQLEMSE 186

Query: 173 NTIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIITNH 227
           +  + NASGL + +      TA D A L   L K++P+  +   +R  +  + N  + + 
Sbjct: 187 HAKFANASGLQEPDGSETKMTAADVAKLAYHLIKDYPEILEVTHLRQSQLAFNNINVIST 246

Query: 228 NKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           N +LNK      +  IDG+KTG+T ++G+    + +  D  I+ VVMG  +  +R
Sbjct: 247 NDMLNKNNKSLYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGTSSKTKR 301


>gi|291543602|emb|CBL16711.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. 18P13]
          Length = 376

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 113/232 (48%), Gaps = 8/232 (3%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
            KP  +  +++    Q+   +      P  ++ K+MT+ +  E L+S  L  NT +  S 
Sbjct: 28  GKPCRAYALLEARTGQLLLEENSSESLPMGTMAKLMTMLLTAEALESGALSENTAVTASP 87

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            A  Q  + ++L      T    +  +I  +AND + A  E +SG+E++F + M+ +  +
Sbjct: 88  AANAQKGASIWLMPGEKMTVGDLLRGMIIGNANDAAVALAEAVSGTEEQFVMDMNARGFE 147

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRK--NFPQYYKYFSIRK--FRYRNRII 224
           +G+++T++  ASGL ++ Q+TTA D   LG L  K   +P    Y +  +   R     +
Sbjct: 148 LGLRSTVFTCASGLSEEGQVTTAAD---LGRLCCKLTEYPVLTPYMTTWRTFLRGEQTEL 204

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
            N N L+     + G+K G+   +G+ +  + +  D   VAVV+G     +R
Sbjct: 205 VNENTLVRSYDGLLGMKAGHGERTGYTLAAAAQRGDGIYVAVVLGCQEDADR 256


>gi|126642515|ref|YP_001085499.1| putative D-ala-D-ala-carboxypeptidase penicillin-binding protein
           [Acinetobacter baumannii ATCC 17978]
          Length = 376

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 110/211 (52%), Gaps = 9/211 (4%)

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAAT--QNPSKLYLKEKTYFTTEQGILALITRSA 140
           MM  YI  + +++ KL LN  I  +   +    + S++YLK     + +Q +  LI  SA
Sbjct: 1   MMVAYIALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIVMSA 60

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND +    E ISG    F   M+ +A+ +GM++T + N +G+   +  TTA D ++L   
Sbjct: 61  NDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPAGITMPDHYTTAHDLSLLSQA 120

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI-VTSLRYK 259
           +    P+Y  Y  +  F Y  R     N  L    ++DG+KTGYT+ +G+N+ +T+ R  
Sbjct: 121 VIHQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTASRPS 180

Query: 260 DDP------IVAVVMGMPTSQERDQKALELI 284
             P      ++ +V+G P++ +R + A +L+
Sbjct: 181 FSPNLPQRRLLVIVLGTPSAVKRAEIADKLM 211


>gi|153823300|ref|ZP_01975967.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33]
 gi|126519164|gb|EAZ76387.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33]
          Length = 225

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 105/200 (52%), Gaps = 7/200 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           F S I+   A ++ AK     +++D +  ++   K+ D    PASLTKMMT Y+I + ++
Sbjct: 25  FASPIVTPDAPQIAAK---GYVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVIGQEVK 81

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              + LN  + +SK A  +N    SK++++  T          +I +S ND   A  E +
Sbjct: 82  RGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHV 141

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +G+E  F  LM+  A  +GM+N+ + N+ GL D N  +T  D A+LG  L ++ P+ Y  
Sbjct: 142 AGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVPEEYAI 201

Query: 212 FSIRKFRYRNRIITNHNKLL 231
           +S +KF Y      N N LL
Sbjct: 202 YSEQKFTYNGITQYNRNGLL 221


>gi|261410081|ref|YP_003246322.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           sp. Y412MC10]
 gi|261286544|gb|ACX68515.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           sp. Y412MC10]
          Length = 323

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 127/267 (47%), Gaps = 24/267 (8%)

Query: 34  ILFLSIIMISMASELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYII 89
           I+ +  ++I        KPK  +   +++D+N  + +     D P  PAS++K+MT  +I
Sbjct: 15  IVPIGAVVIGNIERAGFKPKVDARAVVLMDLNTGRILLSENGDVPLPPASMSKLMTELVI 74

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            + +++ K   + ++ +S TA+     K+ LK     T  +   ++   SAND S A  E
Sbjct: 75  LDDIKTGKRSWDDEVKISDTASDVRGVKIALKSGEILTVRELFQSITVYSANDASVALAE 134

Query: 150 FISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLH-----------DKNQITTARDQAIL 197
             +GSE+ F   M+ KAK+IG+ + T + NASG+            D   + TA D A L
Sbjct: 135 HFAGSEEAFVRKMNAKAKEIGLSSATRFVNASGVEQGTANGHAWSSDGETVMTAEDTAKL 194

Query: 198 GILLRKNFPQYYKYFS--IRKFRYRNRIITNHNKLLNKM------HNIDGIKTGYTRNSG 249
              L ++ P      S    K   RN  ++N N +L  +         DG+K GYT N+G
Sbjct: 195 AAHLIRSHPDILSTSSKTQTKISGRNLYLSNTNWMLPSLGGPYSYEGTDGLKAGYTANAG 254

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQER 276
           +    +   +   ++AVVMG  + + R
Sbjct: 255 YCFTGTAEKQGSRLIAVVMGTESKEAR 281


>gi|289578326|ref|YP_003476953.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           italicus Ab9]
 gi|289528039|gb|ADD02391.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           italicus Ab9]
          Length = 382

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/267 (31%), Positives = 133/267 (49%), Gaps = 26/267 (9%)

Query: 34  ILFLSIIMISMAS-ELHAKPKY------SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMT 85
           + +L I++  M+S +++A   Y      S+IVID    ++   K    + P AS TK+MT
Sbjct: 5   VFYLFILLYFMSSVKVYANSDYPSIFAKSAIVIDQETGRVLYEKNSHEKLPMASTTKIMT 64

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           L +  E     K +LN  + VSK AA+   S ++L        E  +  L+  S ND +T
Sbjct: 65  LLVALE-----KGNLNDIVTVSKRAASVGGSSIWLSPGEKIDMESLLYGLMLNSGNDAAT 119

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILGILLRK 203
           A  E I GS + FA +M+ KAK+IG  +T +   SGL     +  TTA D   L ++ R 
Sbjct: 120 AIAEHIGGSVENFAKIMNEKAKEIGAYDTHFVTPSGLDIGIDDHYTTAYD---LALITRY 176

Query: 204 NF--PQYYKYFSIR------KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
            F  P++ +  S +      + +  +R + N NKLL      DG+KTG+T  +G  +V+S
Sbjct: 177 AFRYPKFAEIVSTKEKTIPWEGKEWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVSS 236

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALE 282
              +    +AVV+  P   E   K L+
Sbjct: 237 ATREGRRFIAVVLNSPPMWEDSIKILD 263


>gi|329925045|ref|ZP_08279989.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5]
 gi|328940164|gb|EGG36496.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5]
          Length = 323

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 127/267 (47%), Gaps = 24/267 (8%)

Query: 34  ILFLSIIMISMASELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYII 89
           I+ +  ++I        KPK  +   +++D+N  + +     D P  PAS++K+MT  +I
Sbjct: 15  IVPIGAVVIGNIERAGFKPKVDARAVVLMDLNTGRILLSENGDLPLPPASMSKLMTELVI 74

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            + +++ K   + ++ +S TA+     K+ LK     T  +   ++   SAND S A  E
Sbjct: 75  LDDIKTGKRSWDDEVKISDTASDVRGVKIALKSGEILTVRELFQSITVYSANDASVALAE 134

Query: 150 FISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLH-----------DKNQITTARDQAIL 197
             +GSE+ F   M+ KAK+IG+ + T + NASG+            D   + TA D A L
Sbjct: 135 HFAGSEEAFVRKMNAKAKEIGLSSATRFVNASGVEQGTANGHAWSSDGETVMTAEDTAKL 194

Query: 198 GILLRKNFPQYYKYFS--IRKFRYRNRIITNHNKLLNKM------HNIDGIKTGYTRNSG 249
              L ++ P      S    K   RN  ++N N +L  +         DG+K GYT N+G
Sbjct: 195 AAHLIRSHPDILSTSSKTQTKISGRNLYLSNTNWMLPSLGGPYSYEGTDGLKAGYTANAG 254

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQER 276
           +    +   +   ++AVVMG  + + R
Sbjct: 255 YCFTGTAEKQGSRLIAVVMGTESKEAR 281


>gi|307942276|ref|ZP_07657627.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Roseibium sp.
           TrichSKD4]
 gi|307774562|gb|EFO33772.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Roseibium sp.
           TrichSKD4]
          Length = 389

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 102/205 (49%), Gaps = 5/205 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYFTTEQG 131
           PA L+++MT   +F+ L+  ++    +  VS+ A     A    + ++ +  +  +    
Sbjct: 60  PAGLSRIMTAATVFKALKDVEVTEAQECKVSEHAWRTGGAPAGGTTMFAELGSSISVLDL 119

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  L+   A+D +    E + G EK FA  M+  A++IG+ N+ + + +G       TT 
Sbjct: 120 LKGLLVHQAHDAAIILAECLDGDEKTFADRMTAYAREIGLTNSQFLSPAGFDVDGAATTV 179

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            D A LG  + + FP  Y  F++ +F + +    N N L+ +M  +DG+ TG +   GF 
Sbjct: 180 EDMATLGFHMLQEFPDRYPLFALNEFTWNDIYQRNRNPLIGEMRGLDGLGTGSSEKGGFA 239

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQER 276
            + SL      ++AVV G P+++ R
Sbjct: 240 SLASLNRDGRRVIAVVAGSPSAKAR 264


>gi|147677612|ref|YP_001211827.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum
           thermopropionicum SI]
 gi|146273709|dbj|BAF59458.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum
           thermopropionicum SI]
          Length = 381

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 100/200 (50%), Gaps = 15/200 (7%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           R PAS TK+MT  +  E    +++     + VS  AA+   + L L+     T E+ I  
Sbjct: 65  RPPASTTKIMTALLALEGGDLQQI-----VTVSPNAASTGEASLDLRPGEKLTLEELIYG 119

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S ND   A  E ISG+E+ F +LM+ KAK IG ++T +KN++GL      TTARD 
Sbjct: 120 AMLESGNDACVAIAEHISGTEENFVLLMNQKAKMIGAEDTSFKNSNGLPAAGHCTTARDL 179

Query: 195 AIL------GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
           A++        + RK      +     K RY    ++N N+LL      DG+KTG T  +
Sbjct: 180 AVITRYALRNDIFRKVVSTRGRAVGGEKCRY----LSNTNRLLWSYAWADGVKTGTTGEA 235

Query: 249 GFNIVTSLRYKDDPIVAVVM 268
           G  +V S       +++VV+
Sbjct: 236 GNCLVASATKDGRQLISVVL 255


>gi|226312616|ref|YP_002772510.1| peptidase S11 family protein precursor [Brevibacillus brevis NBRC
           100599]
 gi|226095564|dbj|BAH44006.1| peptidase S11 family protein precursor [Brevibacillus brevis NBRC
           100599]
          Length = 406

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 119/227 (52%), Gaps = 16/227 (7%)

Query: 55  SSIVIDVNKNQMTGFKQD--EPRYPASLTKMMT-LYIIFEYLQSKKLHLNTQIPVSKTAA 111
           S+I+ID    Q+  F+++  E  YPAS+TK+ T +Y I      +K +L+  + VSK A 
Sbjct: 40  SAILIDATTGQVL-FEKNPHEKLYPASITKIATGIYAI------EKGNLDDTVTVSKKAR 92

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK-KIG 170
            +  +++YL+E    T    +  L+  S ND  TA  E +S + ++FA+ ++   K K+G
Sbjct: 93  REEGTRVYLEEGEKITLRNLLYGLLMNSGNDAGTAIAEHMSQTTERFAVDLNAYLKEKVG 152

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR----IITN 226
           +  T + N  GLHD N  TTA D A +     KN P + +    ++  +  +    ++ N
Sbjct: 153 VTETNFANPHGLHDPNHYTTAADMAKISRYAMKN-PVFREIVGTKRLPWHGQTWETVLVN 211

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           HNKLL +     GIK G+T  +   +V S +  +  ++AV M   TS
Sbjct: 212 HNKLLREYEGATGIKNGFTDQAMHTLVGSAKRGETELIAVTMKASTS 258


>gi|229196199|ref|ZP_04322948.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus m1293]
 gi|228587264|gb|EEK45333.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus m1293]
          Length = 317

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 126/236 (53%), Gaps = 16/236 (6%)

Query: 47  ELHAKPKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+ AK   ++++ID  N + +    ++E   PAS++KMMT+Y++ E + + K+     + 
Sbjct: 62  EIDAK---AAMIIDASNGDIIYQHNENEAFAPASMSKMMTVYLLLENVHNGKVRWEDPVK 118

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM  K
Sbjct: 119 MSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMDAK 178

Query: 166 AKKIGM-QNTIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--KFRY 219
           AK+  M ++  + NASGL + +      TA D A L   L K++P+  +   +R  +  +
Sbjct: 179 AKQFKMSEHAKFANASGLQEPDGSETKMTAGDVANLAYHLIKDYPEILEVTHLRQSQLAF 238

Query: 220 RNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            N  + + N +LNK      +  IDG+KTG+T ++G+    + +  D  I+ VVMG
Sbjct: 239 NNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMG 294


>gi|42781103|ref|NP_978350.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           ATCC 10987]
 gi|217959457|ref|YP_002338009.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH187]
 gi|229138682|ref|ZP_04267264.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           BDRD-ST26]
 gi|42737024|gb|AAS40958.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           ATCC 10987]
 gi|217066480|gb|ACJ80730.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH187]
 gi|228644801|gb|EEL01051.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           BDRD-ST26]
 gi|324326015|gb|ADY21275.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 317

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 127/236 (53%), Gaps = 16/236 (6%)

Query: 47  ELHAKPKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+ AK   ++++ID  N + +    ++E   PAS++KMMT Y++ E + + K+     + 
Sbjct: 62  EIDAK---AAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVRWEDPVK 118

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM+ K
Sbjct: 119 MSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMNAK 178

Query: 166 AKKIGM-QNTIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--KFRY 219
           AK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R  +  +
Sbjct: 179 AKQLKMSEHAKFANASGLQEPDGSETKMTAGDVANLAYHLIKDYPEILEVTHLRQSQLAF 238

Query: 220 RNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            N  + + N +LNK      +  IDG+KTG+T ++G+    + +  D  I+ VVMG
Sbjct: 239 NNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMG 294


>gi|228907701|ref|ZP_04071557.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           IBL 200]
 gi|228851934|gb|EEM96732.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           IBL 200]
          Length = 309

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 131/252 (51%), Gaps = 21/252 (8%)

Query: 46  SELHAKPKY--------SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSK 96
           +E    PKY        ++++ID +   +   + ++E   PAS++KMMT Y++ E + + 
Sbjct: 42  TEKAVPPKYIPPKIDAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNG 101

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           K+     + +S  AA    +++ ++     T      AL+  SAN+ + A  E ++ +EK
Sbjct: 102 KVRWEDPVKMSVKAAQTEGARIPVQVNDTLTVNDLYHALMIESANNSAVALAEHMAKTEK 161

Query: 157 KFAILMSNKAKKIGM-QNTIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYF 212
            F  LM+ KAK++ M ++  + NASGL + +      TA D A L   L K++P+  +  
Sbjct: 162 DFVQLMNAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVT 221

Query: 213 SIR--KFRYRNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
            +R  +  + N  + + N +LNK      +  +DG+KTG+T ++G+    + +  D+ I+
Sbjct: 222 HLRQSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRII 281

Query: 265 AVVMGMPTSQER 276
            VVMG  +  +R
Sbjct: 282 TVVMGTSSKTKR 293


>gi|206977452|ref|ZP_03238347.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           H3081.97]
 gi|206744302|gb|EDZ55714.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           H3081.97]
          Length = 317

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 126/239 (52%), Gaps = 21/239 (8%)

Query: 52  PKY--------SSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           PKY        ++++ID  N + +    ++E   PAS++KMMT Y++ E + + K+    
Sbjct: 56  PKYIPREIDAKAAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM
Sbjct: 116 PVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLM 175

Query: 163 SNKAKKIGM-QNTIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--K 216
           + KAK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R  +
Sbjct: 176 NAKAKQLKMSEHAKFANASGLQEPDGSETKMTAGDVANLAYHLIKDYPEILEVTHLRQSQ 235

Query: 217 FRYRNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
             + N  + + N +LNK      +  IDG+KTG+T ++G+    + +  D  I+ VVMG
Sbjct: 236 LAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMG 294


>gi|320538339|ref|ZP_08038220.1| serine-type D-Ala-D-Ala carboxypeptidase [Treponema phagedenis
           F0421]
 gi|320144838|gb|EFW36573.1| serine-type D-Ala-D-Ala carboxypeptidase [Treponema phagedenis
           F0421]
          Length = 478

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 120/230 (52%), Gaps = 16/230 (6%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN-TQIPVSKTAAT 112
           S IV + +  Q+   ++ D    PASLTK++ +Y+  + + S ++ L+   +P  ++ A 
Sbjct: 94  SVIVANADTGQLLYEYQADRKIPPASLTKLVAMYVAMQAIDSGEITLDQVVVPPRESWAE 153

Query: 113 QNP---SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
             P   S L+L      T  + +  +   S ND + A    +SGS  KF   MS   K +
Sbjct: 154 NIPPGSSLLFLGPNQQLTVSELLRGMAVVSGNDAAIALAHAVSGSVPKFVERMSQAVKTL 213

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF-SIRKFRY------RNR 222
           G+++T++   SGL ++N  TTARD A   ++  + +P+  + F ++++  Y      +N 
Sbjct: 214 GLKHTVFTEPSGLSEEN-YTTARDFARFCLVYIREYPENLERFHALQELTYPLSHNVKNL 272

Query: 223 I-ITNH--NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           I IT    N LL K+   DG+KTG+   SGFNI  + +     I+AV++G
Sbjct: 273 ISITQPATNTLLGKLKGCDGLKTGFIYESGFNIALTCKRAGTRILAVILG 322


>gi|254522509|ref|ZP_05134564.1| beta-lactamase [Stenotrophomonas sp. SKA14]
 gi|219720100|gb|EED38625.1| beta-lactamase [Stenotrophomonas sp. SKA14]
          Length = 260

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 107/212 (50%), Gaps = 10/212 (4%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT---AATQNPSKLYLKEKTYFTTEQG 131
           R PASLTK+MT Y  +  ++ +    +  + ++     A   + +++ L      T  + 
Sbjct: 33  RQPASLTKLMTAYAAYACVEERGRAWDEAVTIASNDVHAVADDETRMGLVPGETVTLARL 92

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  L+  S ND + A    + GS+  F   M+  A+++G+++T + + SG+   +  ++A
Sbjct: 93  LEGLMIVSGNDAALAIARHLDGSQTAFLDRMNRHARQLGLRSTWFASVSGITTPHHASSA 152

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           RD A+L   L  + PQ     + R F +      N N LL + H +DG+KTGYTR +GF 
Sbjct: 153 RDMAVLAACLLNDHPQILAITAQRAFVHGRFSRNNQNALLGE-HGVDGLKTGYTRAAGFC 211

Query: 252 I-VTSLRY---KDDPI--VAVVMGMPTSQERD 277
           +  T+ R    +  P+  + VV+G  +   RD
Sbjct: 212 LAATACRTVPGRAQPVRLITVVLGSESRDARD 243


>gi|222095601|ref|YP_002529658.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1]
 gi|221239659|gb|ACM12369.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1]
          Length = 317

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 127/236 (53%), Gaps = 16/236 (6%)

Query: 47  ELHAKPKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+ AK   ++++ID  N + +    ++E   PAS++KMMT Y++ E + + K+     + 
Sbjct: 62  EIDAK---AAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVRWEDPVK 118

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM+ K
Sbjct: 119 MSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMNAK 178

Query: 166 AKKIGM-QNTIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--KFRY 219
           AK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R  +  +
Sbjct: 179 AKQLKMSEHAKFANASGLQEPDGSETKMTAGDVANLAYHLIKDYPEILEVTHLRQSQLAF 238

Query: 220 RNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            N  + + N +LNK      +  IDG+KTG+T ++G+    + +  D  I+ VVMG
Sbjct: 239 NNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMG 294


>gi|257066773|ref|YP_003153029.1| Serine-type D-Ala-D-Ala carboxypeptidase [Anaerococcus prevotii DSM
           20548]
 gi|256798653|gb|ACV29308.1| Serine-type D-Ala-D-Ala carboxypeptidase [Anaerococcus prevotii DSM
           20548]
          Length = 403

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 14/227 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTT 128
           DE    ASLTK+MT  ++ + + + K+ LNT +   K A    +   S L LKE   ++ 
Sbjct: 58  DEALPMASLTKLMTFLLVRDAMDAGKIDLNTSVKADKRAEELTSWEYSALGLKENESYSV 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL---HDK 185
           E+ +  LI  S ND +    + ++GSE KFA +M+ KAK +G+ +  Y NASG+     K
Sbjct: 118 EELLQGLIAVSGNDCAHLLAKTVAGSEDKFAQMMNQKAKDLGLTSQKYYNASGIGTDDGK 177

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK--LLNKMHNIDGIKTG 243
              ++ARD   L   + K +P   +Y ++ +     + I  ++   L  ++  +DG+KTG
Sbjct: 178 ENKSSARDLFKLSSEIVKKYPDILRYSTMDEVNIPGKGIRKNSTIPLRGEIKGVDGLKTG 237

Query: 244 YTRNSGFNIVTSLRYKD----DPI--VAVVMGMPTSQERDQKALELI 284
            T  +G+ +VT+   K+    D    + VVMG      RD    +LI
Sbjct: 238 TTDQAGYCLVTTTDMKELDGNDEFRTIGVVMGADQKDTRDSVMSDLI 284


>gi|256752045|ref|ZP_05492913.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256749055|gb|EEU62091.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 379

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 151/311 (48%), Gaps = 33/311 (10%)

Query: 34  ILFLSIIMISMAS-ELHAK--PKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTL 86
           IL+L I++  M+S +++A+  P  S+   IV+D    ++   K    + P AS TK+MTL
Sbjct: 5   ILYLFILLYFMSSVKVYAESYPSISAKAAIVMDQETGRVLYEKNPHEKLPMASTTKIMTL 64

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            +  E     K +LN  + VSK AA+   S ++L        E  +  L+  S ND +TA
Sbjct: 65  LVALE-----KGNLNDIVTVSKRAASVGGSSIWLSPGEKIDMESLLYGLMLNSGNDAATA 119

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILGILLRKN 204
             E I GS + F  +M+ KA++IG  NT +   SGL     +  TTA D   L ++ R  
Sbjct: 120 IAEHIGGSVENFIEIMNQKAREIGAYNTHFVTPSGLDIGIDDHYTTAYD---LALITRYA 176

Query: 205 F--PQYYKYFSIR------KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           F  P++ +  S +      + R  +R + N NKLL      DG+KTG+T  +G  +V+S 
Sbjct: 177 FRYPKFAEIVSTKEKTIPWEGREWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVSSA 236

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITS------FLEKKTL--KHQQTHRKDNLSSTS 308
             +    +AVV+  P   E   K L+   S       LEK  L  K +    K+N  S  
Sbjct: 237 SREGRRFIAVVLNSPPMWEDSMKILDYAFSKYKPYKVLEKGELIKKIKVEGGKENSVSVV 296

Query: 309 LKKSLMIKKLK 319
            ++  +I  L+
Sbjct: 297 SERECIIPALE 307


>gi|164687904|ref|ZP_02211932.1| hypothetical protein CLOBAR_01549 [Clostridium bartlettii DSM
           16795]
 gi|164602317|gb|EDQ95782.1| hypothetical protein CLOBAR_01549 [Clostridium bartlettii DSM
           16795]
          Length = 399

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 145/303 (47%), Gaps = 29/303 (9%)

Query: 29  QLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLT 81
           + + K+L LSII+      IS+A +   +    SI+ID   N+    K  + + P ASL+
Sbjct: 6   KFVSKVLLLSIILNIFTTSISLAYDNIDRYSKGSILIDQLTNRTLYEKNPDKKMPLASLS 65

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           KMMT  I  E ++  K+  N  I + +  A    S   LK        + +  L+  S N
Sbjct: 66  KMMTFLIAIESIKEGKVKENDIIEIDQEIAKVKGSSYKLKVGEKVPLIELMNGLMIVSGN 125

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----------HDKNQITTA 191
           D + A  + I GS   F  +M+ K K++GM+NT + N +GL            K  I+T 
Sbjct: 126 DAAIAIAKHIGGSVDDFVKIMNKKTKELGMKNTSFVNPNGLPIYSLKEPSKPPKENISTP 185

Query: 192 RDQAILGILLRKNFPQYYKYFS---IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
           RD +IL   +  N+ +     +   +  +  R     N N LL  + ++DG+KTGYT N+
Sbjct: 186 RDISILAKYMFDNYEKEVTSITDKQVYSYPERGFCKNNTNVLLQLIPDVDGVKTGYTGNA 245

Query: 249 GFNIVTSLR-YKDDP------IVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRK 301
           G+ +  S++ +KDD       ++ VV+G     +R Q ++ L+     K+  K +   +K
Sbjct: 246 GYCLCFSMKTHKDDKNDCDNRLIGVVLGTNHKNKRTQASMSLLE--YGKQNFKTKNIAQK 303

Query: 302 DNL 304
           D L
Sbjct: 304 DEL 306


>gi|229006378|ref|ZP_04164057.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus mycoides Rock1-4]
 gi|228754877|gb|EEM04243.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus mycoides Rock1-4]
          Length = 201

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 103/186 (55%), Gaps = 8/186 (4%)

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MT+ +I E ++  KL L  ++  S+ AA+   S+++L+     T  + +  +   S
Sbjct: 1   MTKIMTMLLIMEQVEKGKLKLEDKVRASEHAASMGGSQIFLEPGEEMTVNEMLKGIAIAS 60

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG- 198
            ND S A  E I+GSE+ F  +M+ KAK +G++NT ++N +GL  K+  +TA D +I+  
Sbjct: 61  GNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTAYDMSIMAK 120

Query: 199 -----ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
                 L+RK   +Y  Y  +R+   +   + N NKL+     +DG+KTG+T  + + + 
Sbjct: 121 ELMKYPLIRKYTGKYEDY--LRENTEKKFWLVNTNKLVRFYPGVDGVKTGFTTEAKYCLT 178

Query: 254 TSLRYK 259
            S   K
Sbjct: 179 ASAEKK 184


>gi|317051485|ref|YP_004112601.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfurispirillum
           indicum S5]
 gi|316946569|gb|ADU66045.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfurispirillum
           indicum S5]
          Length = 341

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 126/241 (52%), Gaps = 10/241 (4%)

Query: 57  IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           IV+D N+ ++   K      P ASLTK+  +  + + +Q   L  + ++  S  ++    
Sbjct: 98  IVVDANRQEIVYAKNLHEVMPIASLTKVFLMEELLDRIQQGALTFDKELRASTRSSLIGG 157

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI-LMSNKAKKIGMQNT 174
           S++YL+E    T EQ   A +  SAND +   GE I G +   A  L++ KA+ +G++NT
Sbjct: 158 SRVYLREHENTTIEQLAKATMIHSANDAAYLLGEVIGGGDANHAAQLLTAKAQTLGLKNT 217

Query: 175 IYKNASGLHDK---NQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITN 226
              N +GL ++   + I+T  + A     L    P+ ++  S      R+   ++ ++ N
Sbjct: 218 RLYNVNGLPNRGGPDNISTPYELAQFTFKLMARNPEIFEIASTEVDYFRRPGGQDFLLVN 277

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            N+ L ++  + G+KTGYT ++GF ++T+    +  ++ V++  P+SQ RD+ A  LI  
Sbjct: 278 RNRPLVRLDYVTGLKTGYTNSAGFCVITTSNKNNRNLITVILNAPSSQIRDRAAKRLIDH 337

Query: 287 F 287
           F
Sbjct: 338 F 338


>gi|307292800|ref|ZP_07572646.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingobium
           chlorophenolicum L-1]
 gi|306880866|gb|EFN12082.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingobium
           chlorophenolicum L-1]
          Length = 387

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 125/262 (47%), Gaps = 22/262 (8%)

Query: 34  ILFLSIIMISMASELHAKPKYSS-----IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLY 87
           +LF+ ++   + +   A P Y+S      + D++   +   K  E R P AS+ KMMT +
Sbjct: 8   LLFVGLLSQPLTA---AAPPYTSEAPIAYLKDMSSGAVLYDKGGETRMPPASMAKMMTAH 64

Query: 88  IIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           + F  +Q   L L+ +  V           Q  S ++L      + E  +  ++T S ND
Sbjct: 65  VAFRLIQKGDLKLDQKFTVRPETWQQWHGPQAGSTMFLSPGEQVSVENLLHGIVTLSGND 124

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI-TTARDQAILGILL 201
                 E I+G+E+ F  LM+ +AK++G++N+ +  ++G  D+     TA D A L    
Sbjct: 125 ACVVLAEGIAGTEQAFVALMNQEAKRLGLKNSNFGTSNGWPDEGVTYVTAADLASLAEAT 184

Query: 202 RKNFPQYY-KYFSIRKFRYRNRII------TNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
            +  P  Y K+++ R F +   +        N N +L K+   DG+KTG+T  +G+    
Sbjct: 185 IEETPSLYKKFYATRAFTWGKTMGGADIEQGNRNPILGKVAGADGLKTGHTEEAGYGFTG 244

Query: 255 SLRYKDDPIVAVVMGMPTSQER 276
           S   +   +V VV G+ ++ +R
Sbjct: 245 SAEQEGRRLVMVVAGLTSANQR 266


>gi|308270080|emb|CBX26692.1| hypothetical protein N47_A07210 [uncultured Desulfobacterium sp.]
          Length = 370

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 89/280 (31%), Positives = 133/280 (47%), Gaps = 22/280 (7%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++ +DV   ++   K  D   +PAS TK+MT  +  E        LN  + VSKTA+  
Sbjct: 64  AAVAMDVTTGKILYAKNPDLKCFPASTTKLMTAIVSIE-----NADLNNLVTVSKTASNV 118

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           +P K   K     T E+ + A +  SAND + A  E +SGS   F  LM+ KA  IG  N
Sbjct: 119 SPHKAGFKAGDKVTVEKLLYAALVGSANDAAVALAEGVSGSVDGFVELMNKKAVAIGASN 178

Query: 174 TIYKNASGLHDKNQITTARDQA-ILGILLRKNFPQYYKYFSIRKFRYRNRI------ITN 226
           T + N +GL    Q  TA D + IL   LR  +P+  +    R F     +      + N
Sbjct: 179 TRFINPNGLPGPGQYITASDLSKILQYALR--YPKLREIIGTR-FAEITTLDGMPIHLKN 235

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            NKLL     + G KTGYTR +G   V +   ++D I+  ++G P+ ++  +++  LI  
Sbjct: 236 TNKLLWSDEEVIGGKTGYTRRAGHCFVGAAERENDKIIIALLGSPSRKDLWKQSETLIAK 295

Query: 287 FLEKKTLKHQQ----THRKDNLSSTSLKKSLMI--KKLKR 320
             E K    +     T  K  L+ TS K    I  KK+K+
Sbjct: 296 GFEIKENSEEPLVYCTQTKPLLAKTSYKNRTTIRNKKIKK 335


>gi|167037551|ref|YP_001665129.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115966|ref|YP_004186125.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166856385|gb|ABY94793.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929057|gb|ADV79742.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 382

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 151/311 (48%), Gaps = 33/311 (10%)

Query: 34  ILFLSIIMISMAS-ELHAK--PKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTL 86
           +L+L I++  M+S +++A+  P  S+   IV+D    ++   K    + P AS TK+MTL
Sbjct: 8   VLYLFILLYFMSSVKVYAESYPSISAKAAIVMDQETGRVLYEKNPHEKLPMASTTKIMTL 67

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            +  E     K +LN  + VSK AA+   S ++L        E  +  L+  S ND +TA
Sbjct: 68  LVALE-----KGNLNDIVTVSKRAASVGGSSIWLSPGEKIDMESLLYGLMLNSGNDAATA 122

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILGILLRKN 204
             E I GS + F  +M+ KA++IG  NT +   SGL     +  TTA D   L ++ R  
Sbjct: 123 IAEHIGGSVENFIEIMNQKAREIGAYNTHFVTPSGLDIGIDDHYTTAYD---LALITRYA 179

Query: 205 F--PQYYKYFSIR------KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           F  P++ +  S +      + R  +R + N NKLL      DG+KTG+T  +G  +V+S 
Sbjct: 180 FRYPKFAEIVSTKEKTIPWEGREWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVSSA 239

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITS------FLEKKTL--KHQQTHRKDNLSSTS 308
             +    +AVV+  P   E   K L+   S       LEK  L  K +    K+N  S  
Sbjct: 240 SREGRRFIAVVLNSPPMWEDSMKILDYAFSKYKPYKVLEKGELIKKIKVEGGKENSVSVV 299

Query: 309 LKKSLMIKKLK 319
            ++  +I  L+
Sbjct: 300 SERECIIPALE 310


>gi|297544605|ref|YP_003676907.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842380|gb|ADH60896.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 382

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 84/267 (31%), Positives = 132/267 (49%), Gaps = 26/267 (9%)

Query: 34  ILFLSIIMISMAS-ELHAKPKY------SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMT 85
           + +L I++  M+S +++A   Y      S+IVID    ++   K    + P AS TK+MT
Sbjct: 5   VFYLFILLYFMSSVKVYANSDYPSIFAKSAIVIDQETGRVLYEKNSHEKLPMASTTKIMT 64

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           L +  E     K +L   + VSK AA+   S ++L        E  +  L+  S ND +T
Sbjct: 65  LLVALE-----KGNLKDIVTVSKRAASVGGSSIWLSPGEKIDMESLLYGLMLNSGNDAAT 119

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILGILLRK 203
           A  E I GS + FA +M+ KAK+IG  +T +   SGL     +  TTA D   L ++ R 
Sbjct: 120 AIAEHIGGSVENFAKIMNEKAKEIGAYDTHFATPSGLDIGIDDHYTTAYD---LALITRY 176

Query: 204 NF--PQYYKYFSIR------KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
            F  P++ +  S +      + +  +R + N NKLL      DG+KTG+T  +G  +V+S
Sbjct: 177 AFRYPKFAEIVSTKEKTIPWEGKEWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVSS 236

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALE 282
              +    +AVV+  P   E   K L+
Sbjct: 237 ATREGRRFIAVVLNSPPMWEDSIKILD 263


>gi|254478669|ref|ZP_05092040.1| D-alanyl-D-alanine carboxypeptidase superfamily protein
           [Carboxydibrachium pacificum DSM 12653]
 gi|214035356|gb|EEB76059.1| D-alanyl-D-alanine carboxypeptidase superfamily protein
           [Carboxydibrachium pacificum DSM 12653]
          Length = 333

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 123/247 (49%), Gaps = 14/247 (5%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQ 103
            S++ +    ++IV+D N  ++   K    + P AS TK+MTL I  E     + +LN  
Sbjct: 22  GSDIPSVSAKAAIVMDQNTGRVLYEKNAHLKLPMASTTKIMTLLIALE-----RGNLNDI 76

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           + VS+ AA+   S ++L        E  +  ++  S ND +TA  E I G+ + F  +M+
Sbjct: 77  VTVSQKAASVGGSSIWLSPGEKIDMESLLYGIMLNSGNDAATAIAEHIGGTVENFVEMMN 136

Query: 164 NKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILGILLRKNFPQYYKYFSIR------ 215
            KAK+IG  NT +   SGL     +  TTA D A++      N+P++ +  S +      
Sbjct: 137 QKAKEIGAYNTHFVTPSGLDISIDDHYTTAYDLALITRYAFLNYPKFAEIVSTKEKTIPW 196

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           + +  +R + N NKLL      DG+KTG+T  +G  +V+S   +    +AVV+  P   E
Sbjct: 197 EGKEWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVSSATREGRRFIAVVLNSPPMWE 256

Query: 276 RDQKALE 282
              K L+
Sbjct: 257 DSMKILD 263


>gi|49481177|ref|YP_036116.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49332733|gb|AAT63379.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 317

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 132/255 (51%), Gaps = 21/255 (8%)

Query: 52  PKY--------SSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           PKY        ++++ID  N + +    ++E   PAS++KMMT Y++ E + + K+    
Sbjct: 56  PKYIPPEVDAKAAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM
Sbjct: 116 PVKMSAKAAQTEGARIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFVQLM 175

Query: 163 SNKAKKIGMQN-TIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--K 216
           + KAK++ M +   + NASGL + +      TA D A L   L K++P+  +   +R  +
Sbjct: 176 NAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQ 235

Query: 217 FRYRNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK      +  IDG+KTG+T ++G+    + +  D  I+ VVMG 
Sbjct: 236 LAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGT 295

Query: 271 PTSQERDQKALELIT 285
               +R  +  +L+T
Sbjct: 296 EDKTKRFTETNKLMT 310


>gi|237738804|ref|ZP_04569285.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 2_1_31]
 gi|229423907|gb|EEO38954.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 2_1_31]
          Length = 419

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 129/254 (50%), Gaps = 11/254 (4%)

Query: 57  IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D+N N +   K  +  YP AS+TK+MTL + F+ + +  + LN  + +SKT      
Sbjct: 168 LVGDLNGNVIFS-KNADTMYPLASVTKVMTLLVTFDEINAGNISLNDSVRISKTPLKYGG 226

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNT 174
           S + LKE   F  E  I A    SAN+ + A  E++  GS   F   M+ K K++G+QN 
Sbjct: 227 SGIALKEGQIFVLEDLIKASAVYSANNATYAIAEYVGEGSVFNFVAKMNKKLKQLGLQND 286

Query: 175 I-YKNASGLHDKNQITTARDQAILGIL-LRKNFPQYYKYFSIRKFR----YRNRI-ITNH 227
           I Y   +GL  +N      +    GI  L     +Y+KY  I   +    Y  +I I N 
Sbjct: 287 IKYHTPAGLPTRNTKMPMDEGTPRGIYKLSIEALKYHKYIEIAGIKNTKIYNGKISIRNR 346

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           N L+ +   + GIKTG+ + + +NI  +++++   ++ VVMG  T + RD     +I + 
Sbjct: 347 NHLIGE-DGVYGIKTGFHKEAKYNITVAVKFEGIDLIIVVMGGETYKTRDDLVRTIIANL 405

Query: 288 LEKKTLKHQQTHRK 301
            E  T+++ Q  RK
Sbjct: 406 KENYTVRNGQLIRK 419


>gi|228933281|ref|ZP_04096137.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228826442|gb|EEM72219.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 317

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 132/255 (51%), Gaps = 21/255 (8%)

Query: 52  PKY--------SSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           PKY        ++++ID  N + +    ++E   PAS++KMMT Y++ E + + K+    
Sbjct: 56  PKYIPPEVDAKAAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM
Sbjct: 116 PVKMSAKAAQTEGARIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFVQLM 175

Query: 163 SNKAKKIGMQN-TIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--K 216
           + KAK++ M +   + NASGL + +      TA D A L   L K++P+  +   +R  +
Sbjct: 176 NAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQ 235

Query: 217 FRYRNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK      +  IDG+KTG+T ++G+    + +  D  I+ VVMG 
Sbjct: 236 LAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGT 295

Query: 271 PTSQERDQKALELIT 285
               +R  +  +L+T
Sbjct: 296 EGKTKRFTETNKLMT 310


>gi|52143467|ref|YP_083362.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
 gi|118477407|ref|YP_894558.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
           Hakam]
 gi|196036868|ref|ZP_03104255.1| beta-lactamase [Bacillus cereus W]
 gi|196041913|ref|ZP_03109201.1| beta-lactamase [Bacillus cereus NVH0597-99]
 gi|196047003|ref|ZP_03114222.1| beta-lactamase [Bacillus cereus 03BB108]
 gi|218903102|ref|YP_002450936.1| beta-lactamase [Bacillus cereus AH820]
 gi|225863912|ref|YP_002749290.1| beta-lactamase [Bacillus cereus 03BB102]
 gi|228914571|ref|ZP_04078180.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228927044|ref|ZP_04090110.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228945594|ref|ZP_04107944.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229121530|ref|ZP_04250757.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 95/8201]
 gi|229184187|ref|ZP_04311396.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BGSC 6E1]
 gi|300117552|ref|ZP_07055339.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           SJ1]
 gi|51976936|gb|AAU18486.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
 gi|118416632|gb|ABK85051.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
           Hakam]
 gi|195990521|gb|EDX54502.1| beta-lactamase [Bacillus cereus W]
 gi|196022107|gb|EDX60795.1| beta-lactamase [Bacillus cereus 03BB108]
 gi|196027285|gb|EDX65904.1| beta-lactamase [Bacillus cereus NVH0597-99]
 gi|218535102|gb|ACK87500.1| beta-lactamase [Bacillus cereus AH820]
 gi|225788359|gb|ACO28576.1| beta-lactamase [Bacillus cereus 03BB102]
 gi|228599302|gb|EEK56913.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BGSC 6E1]
 gi|228661994|gb|EEL17607.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 95/8201]
 gi|228814112|gb|EEM60383.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228832779|gb|EEM78350.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228844890|gb|EEM89932.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|298725087|gb|EFI65742.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           SJ1]
          Length = 317

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 125/239 (52%), Gaps = 21/239 (8%)

Query: 52  PKY--------SSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           PKY        ++++ID  N + +    ++E   PAS++KMMT Y++ E + + K+    
Sbjct: 56  PKYIPPEVDAKAAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM
Sbjct: 116 PVKMSAKAAQTEGARIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFVQLM 175

Query: 163 SNKAKKIGMQN-TIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--K 216
           + KAK++ M +   + NASGL + +      TA D A L   L K++P+  +   +R  +
Sbjct: 176 NAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQ 235

Query: 217 FRYRNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
             + N  + + N +LNK      +  IDG+KTG+T ++G+    + +  D  I+ VVMG
Sbjct: 236 LAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMG 294


>gi|51893513|ref|YP_076204.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51857202|dbj|BAD41360.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 424

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 110/228 (48%), Gaps = 13/228 (5%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S I++D    Q+   K  + R   AS TK+MT  +  E   S +L     IP    A   
Sbjct: 44  SGILMDCATGQVLWEKNPDERLAIASTTKIMTALLAIE---SGRLDETVTIP--PEAELI 98

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             SK+YL + T +T  + + ALI  SAND + A   F+ GSE+ F   M+ KA+ +G+ +
Sbjct: 99  EGSKVYLTQGTTYTLRELLEALILESANDAAVAIAIFLGGSEEAFVRQMNEKARALGLTD 158

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------NRIITNH 227
           T ++N  GL +    ++ARD A LG +   + P Y +        +        R I N 
Sbjct: 159 TQFRNPHGLDEDGHYSSARDLARLGRVAMAD-PVYREIAGTEWLTFPWPEMETTREIYNR 217

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           N L+ +M    G+K GYT  + F +V S       ++ V++G P  ++
Sbjct: 218 NLLIQRMPEATGVKNGYTEAALFTLVGSAAADGREVIGVLLGNPDKEQ 265


>gi|20807777|ref|NP_622948.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516333|gb|AAM24552.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 380

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 123/247 (49%), Gaps = 14/247 (5%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQ 103
            S++ +    ++IV+D N  ++   K    + P AS TK+MTL I  E     + +LN  
Sbjct: 22  GSDIPSVSAKAAIVMDQNTGRVLYEKNAHLKLPMASTTKIMTLLIALE-----RGNLNDI 76

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           + VS+ AA+   S ++L        E  +  ++  S ND +TA  E I G+ + F  +M+
Sbjct: 77  VTVSQKAASVGGSSIWLSPGEKIDMESLLYGIMLNSGNDAATAIAEHIGGTVENFVEMMN 136

Query: 164 NKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILGILLRKNFPQYYKYFSIR------ 215
            KAK+IG  NT +   SGL     +  TTA D A++      N+P++ +  S +      
Sbjct: 137 QKAKEIGAYNTHFVTPSGLDIGIDDHYTTAYDLALITRYAFLNYPKFAEIVSTKEKTIPC 196

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           + +  +R + N NKLL      DG+KTG+T  +G  +V+S   +    +AVV+  P   E
Sbjct: 197 EGKEWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVSSATREGRRFIAVVLNSPPMWE 256

Query: 276 RDQKALE 282
              K L+
Sbjct: 257 DSMKILD 263


>gi|121535761|ref|ZP_01667563.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus
           carboxydivorans Nor1]
 gi|121305660|gb|EAX46600.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus
           carboxydivorans Nor1]
          Length = 390

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 121/235 (51%), Gaps = 9/235 (3%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR---YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           S++++D N   +    + EP     PAS+TK+MTL +  E ++  ++     +  S+ A 
Sbjct: 44  SAVLMDANGAVLW---EKEPHKRLPPASVTKVMTLLLAVEAVEQGRIKPTDLVYTSEHAW 100

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            Q  S+++L+     T ++ ++A+   SAND + A  E I GSE+     M+ +A  +G+
Sbjct: 101 RQGGSQIWLEPGEAMTVQEMMIAVAVVSANDAAVALMEHIYGSEQAAVEAMNKRAASLGL 160

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIITNHNK 229
           QNT + N +GL  ++   +A D A+L +      P Y +   I+++  R     + N NK
Sbjct: 161 QNTHFVNVNGLPAQDHYMSAYDTALL-VKEAVRHPLYMELCGIKEYWLREGKNWLVNTNK 219

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           LL      DG+KTG+T  + +    + +     ++AVV   P  +   +++++L+
Sbjct: 220 LLWWYKGADGLKTGWTEEAKYCFAGTAKRDGLRLIAVVFATPEPRSHLRESMKLM 274


>gi|257456802|ref|ZP_05621986.1| D-alanyl-D-alanine carboxypeptidase DacA [Treponema vincentii ATCC
           35580]
 gi|257445808|gb|EEV20867.1| D-alanyl-D-alanine carboxypeptidase DacA [Treponema vincentii ATCC
           35580]
          Length = 480

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 131/267 (49%), Gaps = 18/267 (6%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI-PVSKTAAT 112
           S++V+D     +   K  D+   PASLTK++ +Y + + ++  +++L+ +I P  ++ A 
Sbjct: 87  SAVVMDAASGALLFEKNPDQSIPPASLTKLVAMYTVMQAVERGEINLSDRIIPPKESWAV 146

Query: 113 QNP---SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
             P   S ++L +    T E+ +L +   S ND + A     +GS   F   M+     +
Sbjct: 147 NIPPGSSLMFLGKNQQVTVEELMLGVAVVSGNDAAVALAIHTAGSVAAFVQRMNEAVAAL 206

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF-SIRKFRY---RNRIIT 225
           G+QNT +++ +GL + N+ TTARD A    +  + +P++   F S R+  Y    N + +
Sbjct: 207 GLQNTHFEDVNGLSEYNR-TTARDFARFSAVYVRKYPEHLARFHSARELTYPQPHNMLKS 265

Query: 226 N-------HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                    N LL+K+   DGIKTG+   SGFNI  + +   +  +AV++G       + 
Sbjct: 266 QTSFRQPATNTLLDKLDGCDGIKTGFIYESGFNIALTAQRDGNRFIAVILGGAGKNMAEG 325

Query: 279 KAL-ELITSFLEKKTLKHQQTHRKDNL 304
           KAL E     L + T  H  T    N 
Sbjct: 326 KALREANGKILMEWTFSHFSTRYAQNF 352


>gi|157150235|ref|YP_001450989.1| penicillin-binding protein 3 [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075029|gb|ABV09712.1| penicillin-binding protein 3 [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 412

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 144/283 (50%), Gaps = 28/283 (9%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTL 86
           I L+   LF S   +  A +     K ++I  DVN  ++   K+     P  SLTK+++ 
Sbjct: 5   IVLLFTCLFCSFCTLVSADDFDVAAK-NAIAFDVNTGKILYEKEATTPVPIGSLTKLLSA 63

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           Y++++ ++++K+ +++Q+ +S+ A       + S L L + +Y + E+ + A +  +AN 
Sbjct: 64  YLVYDAIKAEKITMDSQVEISEYALKLTTNYDISNLPLDKGSY-SVEELLEASLIANANS 122

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------------DKNQ 187
            + A  E I+GSEKKF  LM  K K+ G+ +    N++GL+               ++NQ
Sbjct: 123 ATIALAEKIAGSEKKFVDLMKAKLKEWGISDAKIVNSTGLNNSHLGDNIYPNSKKDEENQ 182

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTG 243
           + +A D A++   L K++PQ         F +    + + N +L  M      +DG+KTG
Sbjct: 183 L-SAYDMALISYHLIKDYPQVLNITEKTSFNFDGLEVNSSNYMLKDMPSYRKGVDGLKTG 241

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            +   G + + S   +D  ++ VV+ +  ++E D KAL L T+
Sbjct: 242 ISDQGGLSFIASANERDMRLITVVLNVENAEE-DIKALFLATA 283


>gi|225174843|ref|ZP_03728840.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
           AHT 1]
 gi|225169483|gb|EEG78280.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
           AHT 1]
          Length = 371

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 123/254 (48%), Gaps = 13/254 (5%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++++D    ++   K    R P AS TK+MT  +  E        L+  + VS+ A+  
Sbjct: 32  AAVLLDQETGRILFSKNAHERLPMASTTKIMTAILAIE-----SGRLDEMVTVSEYASLV 86

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S + L      T E+ +  L+ RS ND +TA  E ++GS +KFA  M+ +A ++G   
Sbjct: 87  EGSGVDLDAGEQKTLEELLYGLMLRSGNDAATAIAEHLAGSVEKFARQMTRRAGELGAAQ 146

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------NRIITNH 227
           T ++N  GL  +N  TTA D  I+ +    + P++ +  +  + R        +RI+ N 
Sbjct: 147 TRFENPHGLEAENHYTTAYDLGIIAVYA-MSLPEFREVVATSEKRISWTGRPYDRILYNQ 205

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           NKLL+     DGIKTG+T  +G   V S       +V+VV+  P   E   + +E   S+
Sbjct: 206 NKLLDMYEYADGIKTGWTTPAGRCFVGSSNKDGWGLVSVVLNAPQMWEDTIELMEFGYSY 265

Query: 288 LEKKTLKHQQTHRK 301
              + L  +  H K
Sbjct: 266 YHWEPLVEEGRHLK 279


>gi|148553407|ref|YP_001260989.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingomonas wittichii
           RW1]
 gi|148498597|gb|ABQ66851.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingomonas wittichii
           RW1]
          Length = 392

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 106/217 (48%), Gaps = 15/217 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NP---SKLYLKEKTYFTTEQG 131
           PAS+ KMMT+Y+ F+ +Q  +L L+    V      Q   P   S ++L      +    
Sbjct: 56  PASMAKMMTVYVAFDLIQKGELKLDAMATVRPETWKQWHGPAAGSTMFLSPGEQVSVANL 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI-TT 190
           +  ++T S ND      E ISG+E+ F  LM+ +AK++G+ N+ +  ++G  D      T
Sbjct: 116 LFGIVTLSGNDACVVLAEHISGTEQAFVALMNRRAKEMGLTNSHFGTSNGWPDGGATYVT 175

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRK-FRYRNRI-----IT--NHNKLLNKMHNIDGIKT 242
           ARD A L     +  P+ YK F  R  F +   +     IT  N + LL ++   DG+KT
Sbjct: 176 ARDLATLAEKTIEEHPKLYKTFYSRPSFTWGKTMGGGQDITQANRDPLLGRVAGADGLKT 235

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-DQ 278
           G+T  +GF    S       +V V+ G+ +  +R DQ
Sbjct: 236 GHTEEAGFGFTGSAEQNGRRLVMVLSGLTSFNQRIDQ 272


>gi|331270026|ref|YP_004396518.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum
           BKT015925]
 gi|329126576|gb|AEB76521.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum
           BKT015925]
          Length = 412

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 119/227 (52%), Gaps = 23/227 (10%)

Query: 57  IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +++D N  Q+   K  + +YP AS TK+MT  +  E  +     L+  + V K A   + 
Sbjct: 37  VLMDKNTGQVLYSKNLDTQYPPASTTKIMTALLTLENCK-----LDDVVTVGKNAVNVDG 91

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           SK+YL E    T +  + AL+ +SAND + A  E ++GS K+F  LM+ KAK++G +NT 
Sbjct: 92  SKVYLFEGEKLTVKDLLYALLLQSANDSAVALSEHVAGSTKEFVNLMNKKAKELGCKNTN 151

Query: 176 YKNASGLHDKNQITTARDQAILGILLRK-NFPQYYKYFSIRKFRYRN--------RIITN 226
           + N  GL+D    TTARD   LG++LR+ +  + +K  +     Y N        R I N
Sbjct: 152 FVNPHGLYDDKHRTTARD---LGLILRELSKHEEFKQIATTSMYYINPTNKETKKRPIWN 208

Query: 227 HNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            +KL+ K         +G KTGYT  S  + V +    +  ++AV++
Sbjct: 209 KDKLIQKNSKCYYEGCEGGKTGYTIQSKHSFVATATRNNKSLIAVLL 255


>gi|323705335|ref|ZP_08116910.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535237|gb|EGB25013.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 381

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 117/240 (48%), Gaps = 20/240 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++IV+D    ++   K    + P AS TK+MTL +  EY      +LN  + VSK AA+ 
Sbjct: 34  AAIVMDQKSGRILFEKNISEKLPMASTTKIMTLLLALEYG-----NLNDIVTVSKKAASV 88

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S ++L      +    +  L+  S ND +TA  E ISGS  KF  LM+ KAK+IG  N
Sbjct: 89  GGSSIWLSPGEKISMINLLYGLMLNSGNDAATAIAEHISGSVDKFVELMNKKAKEIGAYN 148

Query: 174 TIYKNASGLH--DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR---------NR 222
           T +   SGL     N  TTA D   L ++ R  F  Y K+  I   + +         +R
Sbjct: 149 TNFVTPSGLDIGIDNHYTTAYD---LALITRYAFNNYNKFAEIVSTKEKTIPWDGKEYDR 205

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NK+L +    DG+KTG+T  +G  +V S       +++VV+      E  QK L+
Sbjct: 206 YLRNKNKMLWQYEGADGVKTGFTNKAGRCLVASASRNGQRLISVVLNSGPMWEDTQKILD 265


>gi|291557282|emb|CBL34399.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum V10Sc8a]
          Length = 409

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 115/235 (48%), Gaps = 6/235 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++IV +V+  Q+        R P AS+TK+M L I  E ++     ++T I  +  A   
Sbjct: 62  AAIVTEVSTGQVLYEHNSHERLPMASVTKLMCLLIWAEEMEKGTFGMDTVITATARANAM 121

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           + S ++L      +    I +++  SAND   A  E+I+G+E+ F   M+ +A+++GM +
Sbjct: 122 DGSVIWLNVGEEMSAYDMIRSVVIASANDACVAVCEYIAGTEEMFVERMNKRAQELGMSD 181

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNRIITNHNK 229
           T Y N  G       T+A D AIL   + + +  Y ++F+ R    +   R   + N NK
Sbjct: 182 THYDNCVGFDSDTHYTSAYDTAILSAAVSE-YDCYNEFFATRLDYVREGERQTQLLNTNK 240

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           L+ +   I G KTG T  +G  +    +  +  + AV +G   S++R     +L+
Sbjct: 241 LMQRYDGIIGGKTGTTDKAGCCLAVWAKRGNMKLCAVALGCKESEQRFTACTDLL 295


>gi|229172673|ref|ZP_04300231.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus MM3]
 gi|228610805|gb|EEK68069.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus MM3]
          Length = 317

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 121/227 (53%), Gaps = 13/227 (5%)

Query: 56  SIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +++ID  N + +    ++E   PAS++KMMT Y++ E + + K+     + +S  AA   
Sbjct: 68  AMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENIHNGKVRWEDPVKMSAKAAQTE 127

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN- 173
            +++ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM+ KAK++ M + 
Sbjct: 128 GARIQVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFVQLMNAKAKELKMSDY 187

Query: 174 TIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIITNHN 228
             + NASGL + +      TA D A L   L K++P+  +   +R  +  + N  + + N
Sbjct: 188 AKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQLAFNNINVVSTN 247

Query: 229 KLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            +LNK      +  IDG+KTG+T ++G+    + +  D  I+ VVMG
Sbjct: 248 DMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMG 294


>gi|301053509|ref|YP_003791720.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis CI]
 gi|300375678|gb|ADK04582.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 317

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 125/239 (52%), Gaps = 21/239 (8%)

Query: 52  PKY--------SSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           PKY        ++++ID  N + +    ++E   PAS++KMMT Y++ E + + K+    
Sbjct: 56  PKYIPPEVDAKAAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM
Sbjct: 116 PVKMSAKAAQTEGARIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFVQLM 175

Query: 163 SNKAKKIGMQN-TIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--K 216
           + KAK++ M +   + NASGL + +      TA D A L   L K++P+  +   +R  +
Sbjct: 176 NAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQ 235

Query: 217 FRYRNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
             + N  + + N +LNK      +  IDG+KTG+T ++G+    + +  D  I+ VVMG
Sbjct: 236 LAFNNINVISTNDMLNKNNEALYIEGIDGLKTGFTDSAGYCFTGTAKQGDIRIITVVMG 294


>gi|297617197|ref|YP_003702356.1| serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145034|gb|ADI01791.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 401

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 129/270 (47%), Gaps = 18/270 (6%)

Query: 35  LFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIF 90
           L  +++ I    +  A P  +S    ++D+   Q+ G K   +PR  AS TK+MT  +  
Sbjct: 37  LTFALLFILSPGKAEAAPYVTSQAYCLVDLTTGQVLGGKNVMQPRPVASTTKVMTAILAL 96

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           EY   K      ++ V    A +  S + L+ +   T E  + A +  SAND S    E 
Sbjct: 97  EYAGLK------EVAVVSPKAARTESGMGLRPQDKMTIEDLLKAALLESANDASVVLAEH 150

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           ++GSE  FA LM+ KA  IG  +T ++NASGL DK  ++T  D A++     +N   + K
Sbjct: 151 VAGSEDMFAYLMNKKAWAIGAYHTHFENASGLPDKEHLSTCYDLAVITRYALRN-QVFEK 209

Query: 211 YFSIRKFRYR------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
             + R+   +       R I N NKLL       G+KTG T  +G  ++ + +  +  +V
Sbjct: 210 LVATRQAVIKQPGYPGGRKIYNTNKLLGSYEGAFGVKTGTTDAAGKCLIGAAQRGNRKLV 269

Query: 265 AVVMGMPTSQERDQKALEL-ITSFLEKKTL 293
           AVV+         Q+ L+   TSF  +K +
Sbjct: 270 AVVLRSWDRYADCQRLLDWGFTSFTREKVV 299


>gi|260881011|ref|ZP_05403380.2| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM
           20544]
 gi|260850172|gb|EEX70179.1| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM
           20544]
          Length = 412

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 118/235 (50%), Gaps = 12/235 (5%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKL 98
           ++IS    L      S++VID    Q+   + +DE R+PAS TK+MTL +  E+      
Sbjct: 58  LVISPDDPLQNLTARSAVVIDAASGQVIYERNKDERRFPASTTKIMTLILALEHS----- 112

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
           +++  + VS  AA    S L+L+          +  ++  S ND + A  E I+GS  KF
Sbjct: 113 NMDDMVTVSSNAAGTEGSTLWLEAGEKIRMGDLLYGMMMHSGNDATVAVAEHIAGSVDKF 172

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           A +M+ KA +IG  NT + NA+GL  ++  TTA D A +        P + +  S ++  
Sbjct: 173 AAMMTAKAHEIGAVNTNFANANGLPREDHYTTAYDLAKI-TAYGYRVPGFEQIVSTKEID 231

Query: 219 YR-----NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +      +  + N N++L      +G+KTGYT  +G  +V+  +     +VAVV+
Sbjct: 232 FDWVKDPSHHLRNENQMLWLYRGANGVKTGYTDAAGRCLVSGAKKDGLQLVAVVL 286


>gi|47568352|ref|ZP_00239054.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
 gi|47555045|gb|EAL13394.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
          Length = 317

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 126/236 (53%), Gaps = 16/236 (6%)

Query: 47  ELHAKPKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+ AK   ++++ID  N + +    ++E   PAS++KMMT Y++ E + + K+     + 
Sbjct: 62  EIDAK---AAMIIDASNGDVIYQQNENEAFAPASMSKMMTAYLLLENVHNGKVRWEDPVK 118

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM+ K
Sbjct: 119 MSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFVQLMNAK 178

Query: 166 AKKIGMQN-TIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--KFRY 219
           AK++ M +   + NASGL + +      TA D A L   L K++P+  +   +R  +  +
Sbjct: 179 AKQLKMSDYAKFANASGLQESDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQLAF 238

Query: 220 RNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            N  + + N +LNK      +  IDG+KTG+T ++G+    + +  D  I+ VVMG
Sbjct: 239 NNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMG 294


>gi|303239548|ref|ZP_07326074.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acetivibrio
           cellulolyticus CD2]
 gi|302592926|gb|EFL62648.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acetivibrio
           cellulolyticus CD2]
          Length = 416

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 128/247 (51%), Gaps = 12/247 (4%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQS 95
           +S+  +S A E+      S+I+++  + Q+   K+ + R + +S  KMMT  +  E + S
Sbjct: 24  ISVFAVSEAPEIKG---VSAILVESKRGQVLFEKESKSRLHISSANKMMTALLALEKVGS 80

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
           K   ++T + +SK AA    S L L+    ++ +  +  +I  SAND +TA  E++ G  
Sbjct: 81  K---IDTPVTISKNAAAAQGSILNLEVGGKYSIQDLVYTVILTSANDSATALAEYVGGDF 137

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           + F  +M++KA+++ M +T + N +GL+D+ Q TTA D A+L      N P +   FS +
Sbjct: 138 QSFVNIMNDKARELKMTDTNFTNPTGLYDEAQYTTAYDLAVLTRFALSN-PYFEHMFSSQ 196

Query: 216 KFRYRNR----IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
              + N+    +ITN N L    + IDG KTGY        +T+    +  ++++V+  P
Sbjct: 197 AKLWTNQGKVEVITNSNNLFWSYNGIDGGKTGYNEVERQTAITTATRDNLRVISIVLDSP 256

Query: 272 TSQERDQ 278
                D 
Sbjct: 257 EKSVYDD 263


>gi|15615440|ref|NP_243743.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Bacillus halodurans C-125]
 gi|10175498|dbj|BAB06596.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Bacillus halodurans C-125]
          Length = 395

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 104/207 (50%), Gaps = 11/207 (5%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D+  YPAS+TK++T  I  E     +  L+  + VSKTA     +++YL E    T  + 
Sbjct: 65  DKKMYPASITKIITALIAIE-----EGDLDDIVTVSKTATEVIGTRVYLVEGEEVTLRKL 119

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK-KIGMQNTIYKNASGLHDKNQITT 190
           +  L+  S ND  TA  E   G+E+ FA  M+   + KIG++NT + N  GL DK   TT
Sbjct: 120 VQGLMINSGNDAGTAIAEHFDGNEEAFAERMNRFVQVKIGVENTHFTNPHGLFDKEHYTT 179

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKMHNIDGIKTGYTR 246
           A D A++     +N  ++    S ++  +        I NH++LL       G+K GY  
Sbjct: 180 AYDMAMITKYAMEN-EKFRDVASTKELEWIGEGWETTIYNHHRLLWDYPGTTGVKNGYVS 238

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            SG+ +VT+    D  ++AV +  P +
Sbjct: 239 QSGYTLVTTAERDDQQLIAVTLNAPGA 265


>gi|332653043|ref|ZP_08418788.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium
           D16]
 gi|332518189|gb|EGJ47792.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium
           D16]
          Length = 367

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 6/210 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D PR  AS TK+MT  +  E   S    L   + +   AA    S LYLK       E  
Sbjct: 52  DTPRLIASTTKLMTALVALESGHS----LEEDVTIPAEAAGVEGSSLYLKTGETVKLETL 107

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  S ND +TA     +GS + FA  M+ K++++GM N+ + N +GL  +   ++A
Sbjct: 108 LYGMLLHSGNDAATAVALTCAGSLEAFAQKMNEKSQQLGMTNSHFTNPTGLDGEEHYSSA 167

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            D A+L        P+  +  + R      R   NHNKLL +     G+KTGYT+ +G  
Sbjct: 168 YDMALLARACLA-VPELKEITATRSTTMEGRTFVNHNKLLWRYEGCVGMKTGYTQAAGRT 226

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           +V++       ++AV +  P S   D  A+
Sbjct: 227 LVSAAERDGMTLIAVTLNAP-SDWADHAAM 255


>gi|530915|gb|AAA68436.1| Highly similar to the E.coli YeeC, DacA and DacC products; putative
           [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 281

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 93/168 (55%), Gaps = 1/168 (0%)

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           ++LKE    +       LI  S ND   A  ++I+G + +F  +M++  KK+ +Q+T ++
Sbjct: 1   MFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFE 60

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHN 236
              GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL +K  +
Sbjct: 61  TVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMH 120

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           IDG+KTG+T  +GFN++ S       ++AVVMG  +S+ R+++A +L+
Sbjct: 121 IDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAKSSKGREEQARKLL 168


>gi|228985080|ref|ZP_04145247.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774567|gb|EEM22966.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 317

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 127/237 (53%), Gaps = 18/237 (7%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRY--PASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           E+ AK   ++++ID +   +  ++Q+E     PAS++KMMT Y++ E + + K+     +
Sbjct: 62  EIDAK---AAMIIDASNGDII-YQQNENEAFAPASMSKMMTAYLLLENVHNGKVRWEDPV 117

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
            +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM+ 
Sbjct: 118 KMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKGFVQLMNA 177

Query: 165 KAKKIGMQN-TIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--KFR 218
           KAK++ M +   + NASGL + +      TA D A L   L K++P+  +   +R  +  
Sbjct: 178 KAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQLA 237

Query: 219 YRNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           + N  + + N +LNK      +  IDG+KTG+T ++G+    + +  D  I+ VVMG
Sbjct: 238 FNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMG 294


>gi|150390405|ref|YP_001320454.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus
           metalliredigens QYMF]
 gi|149950267|gb|ABR48795.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus
           metalliredigens QYMF]
          Length = 377

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 110/223 (49%), Gaps = 8/223 (3%)

Query: 49  HAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS 107
           H    +++I++DV   ++   +    + P AS TK++T  +  E L   KL     I V+
Sbjct: 36  HFPSSHAAILMDVETGRVLAGQNFHEKMPMASTTKILTGLLAVENLPLDKL-----ISVN 90

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
             A     S +YL+      +   I  L+ RS ND + A    ISGS + FA LM+ +AK
Sbjct: 91  PKAVGVEGSSIYLESNERVKSIDLIYGLMLRSGNDAAEAIAYEISGSIEDFATLMNQRAK 150

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSIRKFRYRNRIIT 225
           +IG  NT + N  GLH  +  TTA D +++     KN  F +  K    +  R  ++   
Sbjct: 151 EIGANNTNFMNPHGLHHDDHYTTAYDLSLITRAALKNVTFKEVVKTEFWQAEREGHKDFA 210

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N NKLL    + DG+KTGYTR SG  +V S    +   +AV +
Sbjct: 211 NKNKLLKSYESADGVKTGYTRRSGRCLVASATNNNMQFIAVTL 253


>gi|160931733|ref|ZP_02079127.1| hypothetical protein CLOLEP_00565 [Clostridium leptum DSM 753]
 gi|156869378|gb|EDO62750.1| hypothetical protein CLOLEP_00565 [Clostridium leptum DSM 753]
          Length = 382

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 111/213 (52%), Gaps = 5/213 (2%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           E R  AS+TK+MTL ++ E +   ++ L   I  S+ A++   S ++L+     + +  +
Sbjct: 56  EVRACASITKVMTLLLVMEAIDQGRMSLTDTITASEHASSMGGSDIWLEPGETMSADDMV 115

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
            A +  SAND + A  E + G+E+ F   M+ +A ++GM++T++KN +GL ++  +T+A 
Sbjct: 116 KATVVASANDAAVALAEHLEGTEEAFVQKMNQRAAELGMKDTVFKNCNGLDEEGHVTSAY 175

Query: 193 DQAILGILLRKNFPQY-YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           D A++   L K+   + Y    +   R     I N NKLL K +N        T     +
Sbjct: 176 DVALMSRELIKHEKIFDYTTIWMDTLREGKTQIVNTNKLL-KSYNGITGLKTGTTGGAGS 234

Query: 252 IVTSLRYKDD-PIVAVVMGMPTSQER--DQKAL 281
            +T+   +D   ++ VV+G  T +ER  D  AL
Sbjct: 235 CITATAQRDGLSLIGVVLGSATGKERFTDAAAL 267


>gi|154497956|ref|ZP_02036334.1| hypothetical protein BACCAP_01936 [Bacteroides capillosus ATCC
           29799]
 gi|150272946|gb|EDN00103.1| hypothetical protein BACCAP_01936 [Bacteroides capillosus ATCC
           29799]
          Length = 392

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 114/239 (47%), Gaps = 9/239 (3%)

Query: 37  LSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEY 92
           L +  + +++    +P  S+   I++D    ++   K  DE R  AS+TK+MT  +  E 
Sbjct: 13  LCLTWLPLSAGAAGEPGVSASCAILVDAESGRVLMEKNADEERAIASITKLMTALVAVES 72

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
                  L+  + + K       S +YL+E    T  + +  L+  S ND + A   F +
Sbjct: 73  TSD----LDRTVTIQKEWTLAEGSSMYLREGEELTLRELLYGLLLVSGNDAALAIAGFCA 128

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           G    F   M+ +A+++GM++T + N +GL  +   +TA D A L I++ +  P   +  
Sbjct: 129 GDTDTFVEWMNLRAQELGMEHTHFVNPNGLPAEGHYSTAADMAKLAIVVMEQ-PDLAEIV 187

Query: 213 SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
             +      R +TNHNKLL +     G+KTGYT  +G  +V+        ++AV +  P
Sbjct: 188 GTKSVTMAGRTMTNHNKLLWRYEGCVGMKTGYTDAAGRTLVSCAERDGQRLIAVTLNAP 246


>gi|254504922|ref|ZP_05117073.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii
           DFL-11]
 gi|222440993|gb|EEE47672.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii
           DFL-11]
          Length = 374

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 100/211 (47%), Gaps = 6/211 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTY 125
           D P  P +L K+MT   +F+ L   +L  +    VS+       A +   + ++   K+ 
Sbjct: 39  DVPFAPGALVKVMTAATVFKALSDGELTQDQLCTVSEHAWRTGGAPSGRGATMFAAIKSE 98

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            + E  +  L+  + ND +    E + GSE  FA  M+  A +IGM N+ + N +G  + 
Sbjct: 99  ISVEDLLKGLLVHNGNDSAIILAECLDGSETAFADRMNALAAEIGMANSNFGNPTGYEEA 158

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
              TT RDQ  LG  L +   + Y  F+I +F + N    N N LL ++ N+DG+  G  
Sbjct: 159 VSTTTVRDQVRLGEYLVEEHTERYSMFAIPEFTWNNIFQRNKNPLLGEIRNLDGLGGGAH 218

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
              G++ + S+      I+A V G+ +   R
Sbjct: 219 SEDGYSGLGSIDRNGRRIIAAVAGLTSDNHR 249


>gi|188586265|ref|YP_001917810.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350952|gb|ACB85222.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 387

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 123/255 (48%), Gaps = 13/255 (5%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+ ++DV   ++   +    + P AS TK+MT  +  E     + +LN  +  S+ A+  
Sbjct: 54  SACLVDVKTGRVLYEQNSHKQLPMASTTKVMTALLSLE-----RGNLNEVVTASEAASEV 108

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S +YL+E    T E  +  L+  S ND + A  E I G  + FA  M+++A+ +G +N
Sbjct: 109 EGSSIYLQEDEQLTLEAMLYGLMLESGNDAAHAIAEHIDGDIESFARNMTDRAESLGAKN 168

Query: 174 TIYKNASGLHDKNQITTARDQAILG--ILLRKNFPQYY----KYFSIRKFRYRNRIITNH 227
           T ++N  GL   N  +TA D  I+    L +  F +      K     K     R + N 
Sbjct: 169 TNFQNPHGLPSDNHYSTAYDMTIIAKEALKKSKFAEIVSTKEKLIPWEKGDADWRYLNND 228

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL-ITS 286
           NKLL+++   DG+KTG+T  +G  ++ S    +  +V  V+  P   +  +  LE  I  
Sbjct: 229 NKLLDELSEADGVKTGWTEAAGRCLIFSGTKDERQVVGTVLKAPKMYQDAENLLEYGIYQ 288

Query: 287 FLEKKTLKHQQTHRK 301
           F EK+ ++  Q  R+
Sbjct: 289 FNEKQVIQKGQLVRE 303


>gi|167749174|ref|ZP_02421301.1| hypothetical protein EUBSIR_00125 [Eubacterium siraeum DSM 15702]
 gi|167657852|gb|EDS01982.1| hypothetical protein EUBSIR_00125 [Eubacterium siraeum DSM 15702]
          Length = 389

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 115/235 (48%), Gaps = 6/235 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++IV +V+  Q+        R P AS+TK+M L I  E ++     ++T I  +  A   
Sbjct: 42  AAIVTEVSTGQVLYEHNSHERLPMASVTKLMCLLIWAEEMEKGTFGMDTVITATARANAM 101

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           + S ++L      +    I +++  SAND   A  E+I+G+E+ F   M+ +A+++GM +
Sbjct: 102 DGSVIWLNVGEEMSAYDMIRSVVIASANDACVAVCEYIAGTEEMFVERMNKRAQELGMSD 161

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNRIITNHNK 229
           T Y N  G       T+A D A+L   + + +  Y ++F+ R    +   R   + N NK
Sbjct: 162 THYDNCVGFDSDTHYTSAYDTALLSAAVSE-YDCYNEFFATRLDYVREGERQTQLLNTNK 220

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           L+ +   I G KTG T  +G  +    +  +  + AV +G   S++R     +L+
Sbjct: 221 LMQRYDGIIGGKTGTTDKAGCCLAVWAKRGNMKLCAVALGCKESEQRFTACTDLL 275


>gi|210623818|ref|ZP_03294067.1| hypothetical protein CLOHIR_02018 [Clostridium hiranonis DSM 13275]
 gi|210153313|gb|EEA84319.1| hypothetical protein CLOHIR_02018 [Clostridium hiranonis DSM 13275]
          Length = 453

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 109/213 (51%), Gaps = 25/213 (11%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPAS TK  T Y++ +++      LN +I +      + PS ++LK+   FT ++ + AL
Sbjct: 60  YPASTTKAWTAYLVIKHVPD----LNEKITIGNLPYIE-PSSMFLKKGETFTVKELLTAL 114

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S NDV+    E +SGS  KFA LM+ +A+ IG   T + N +GL D N  TTA+D A
Sbjct: 115 MVHSCNDVAYVLAEHVSGSIPKFADLMNKEAEAIGCTGTHFNNPNGLPDPNHYTTAKDMA 174

Query: 196 ILG-----------ILLRKN--FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNI----- 237
           ++            I+  K+  F    +Y   R +   N+ +T+H K+  K   I     
Sbjct: 175 LIARKCMSDSVFREIVATKSVKFKPTKQYPHERVYTNSNKFLTSHQKITYKGKRIDIKYD 234

Query: 238 --DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             DGIKTG+T  +G  ++TS    +  I++ V 
Sbjct: 235 IVDGIKTGFTNAAGKCLLTSAVKDNQRIISAVF 267


>gi|229155565|ref|ZP_04283673.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus ATCC
           4342]
 gi|228627883|gb|EEK84602.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus ATCC
           4342]
          Length = 317

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 113/211 (53%), Gaps = 12/211 (5%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
           ++E   PAS++KMMT Y++ E + + K+     + +S  AA    +++ ++     T + 
Sbjct: 84  ENEAFAPASMSKMMTAYLLLENVHNGKVRWEDPVKMSAKAAQTEGARIPVQVNDTLTVKD 143

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDKNQIT 189
              AL+  SAN+ + A  E ++ +EK F  LM+ KAK++ M +   + NASGL + +   
Sbjct: 144 LYHALMIESANNSAVALAEHMAKTEKDFVQLMNAKAKQLKMSDYAKFANASGLQEPDGSE 203

Query: 190 ---TARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIITNHNKLLNK------MHNID 238
              TA D A L   L K++P+  +   +R  +  + N  + + N +LNK      +  ID
Sbjct: 204 TKMTAADVANLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDMLNKNNKALYIEGID 263

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           G+KTG+T ++G+    + +  D  I+ VVMG
Sbjct: 264 GLKTGFTDSAGYCFTGTAKQGDTRIITVVMG 294


>gi|114566442|ref|YP_753596.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114337377|gb|ABI68225.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 373

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 115/245 (46%), Gaps = 16/245 (6%)

Query: 34  ILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYII 89
           I+ L + M  +AS ++A P  SS    ++D    Q+      DE R  AS  KMMT  + 
Sbjct: 11  IILLLLFMGLIASPVNAAPYISSPYYCLMDGGSGQLILSSNGDETRPVASTVKMMTAILT 70

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            EY       ++ +  VS  AA      + LK +   T  + +   + RS+ND +    E
Sbjct: 71  IEYA-----GMDEEATVSSKAARTPEYSIGLKAEQRITVGELLKVALIRSSNDAAVVLAE 125

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            I+G E  FA LMS KA  IG  NT + NASGL    Q +T  D A +G    ++ PQ  
Sbjct: 126 HIAGDESLFAHLMSKKAFLIGASNTRFSNASGLPGGEQFSTCSDLAQIG-RYAQSHPQIK 184

Query: 210 KYFSIRKFRYRNRI------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           +  + R+  +++        I+N N LL      DGIKTG    +G  +V S       +
Sbjct: 185 ELVATRQSDFKHPSYSQPLRISNTNPLLGSYQGADGIKTGTANAAGKCLVASATRDGRHL 244

Query: 264 VAVVM 268
           +AVV+
Sbjct: 245 IAVVL 249


>gi|302389707|ref|YP_003825528.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter
           oceani DSM 16646]
 gi|302200335|gb|ADL07905.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter
           oceani DSM 16646]
          Length = 377

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 102/204 (50%), Gaps = 11/204 (5%)

Query: 70  KQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           K  E R P AS TK+MT  +  E     K  LN+ + VS+ AA+   S  +L+     + 
Sbjct: 53  KNSEIRLPMASTTKIMTAIVALE-----KGDLNSTVTVSRKAASVRGSSFHLEPGETMSL 107

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           E  +  L+  S ND + A  E I G  K F  LM+ KA++IG  NT +KN  GL +    
Sbjct: 108 ESMLYGLLLPSGNDAAVAIAEHIGGDVKTFVELMNLKAREIGAFNTHFKNPHGLDEPGHF 167

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKF----RYRNRIITNHNKLLNKMHNIDGIKTGY 244
           TTA+D A++      N P++ +    +        R R I N N+LL     IDG+KTGY
Sbjct: 168 TTAKDLALI-TRYALNIPKFREIVRTKDIIITEGRRPRHIYNTNRLLRVSEEIDGVKTGY 226

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVM 268
           T  +G  +V +       +++VV+
Sbjct: 227 TGKAGRCLVATAERNGMRLISVVL 250


>gi|167040213|ref|YP_001663198.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X514]
 gi|300914297|ref|ZP_07131613.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X561]
 gi|307724467|ref|YP_003904218.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X513]
 gi|166854453|gb|ABY92862.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X514]
 gi|300889232|gb|EFK84378.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X561]
 gi|307581528|gb|ADN54927.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X513]
          Length = 382

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 150/311 (48%), Gaps = 33/311 (10%)

Query: 34  ILFLSIIMISMAS-ELHAK--PKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTL 86
           +L+L I++  M+S +++A+  P  S+   IV+D    ++   K    + P AS TK+MTL
Sbjct: 8   VLYLFILLYFMSSVKVYAESYPSISAKAAIVMDQETGRVLYEKNPHEKLPMASTTKIMTL 67

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            +  E     K +LN  + VSK AA+   S ++L        E  +  L+  S ND +TA
Sbjct: 68  LVALE-----KGNLNDIVTVSKRAASVGGSSIWLSPGEKIDMESLLYGLMLNSGNDAATA 122

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILGILLRKN 204
             E I GS + F  +M+ KA++IG  NT +   SGL     +  TTA D   L ++ R  
Sbjct: 123 IAEHIGGSVENFIEIMNQKAREIGAYNTHFVTPSGLDIGIDDHYTTAYD---LALITRYA 179

Query: 205 F--PQYYKYFSIR------KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           F  P++ +  S +      + +  +R + N NKLL      DG+KTG+T  +G  +V+S 
Sbjct: 180 FRYPKFAEIVSTKEKTIPWEGKEWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVSSA 239

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITS------FLEKKTL--KHQQTHRKDNLSSTS 308
                  +AVV+  P   E   K L+   S       LEK  L  K +    K+N  S  
Sbjct: 240 TRDGRRFIAVVLNSPPMWEDSMKILDYAFSKYKPYKVLEKGELIKKIKVEGGKENSVSVV 299

Query: 309 LKKSLMIKKLK 319
            ++  +I  L+
Sbjct: 300 SERECIIPALE 310


>gi|94496388|ref|ZP_01302965.1| D-alanyl-D-alanine carboxypeptidase [Sphingomonas sp. SKA58]
 gi|94424134|gb|EAT09158.1| D-alanyl-D-alanine carboxypeptidase [Sphingomonas sp. SKA58]
          Length = 387

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 100/207 (48%), Gaps = 13/207 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NP---SKLYLKEKTYFTTEQG 131
           PAS+ KMMT ++ F  +Q   L L+T+  V      Q   P   S ++L      + E  
Sbjct: 54  PASMAKMMTAHVAFRLIQKGDLKLDTKFTVRPETWQQWHGPKAGSTMFLSAGEQVSVENL 113

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI-TT 190
           +  ++T S ND      E I+G+E+ F  LM+ + K++G++N+ +  ++G  D+     T
Sbjct: 114 LHGIVTLSGNDACVVLAEGIAGTEQAFVALMNEEGKRLGLKNSHFGTSNGWPDEGVTYVT 173

Query: 191 ARDQAILGILLRKNFPQYYK-YFSIRKFRYRNRII------TNHNKLLNKMHNIDGIKTG 243
           A D A L     +  P  YK +++ + F +   +        N N +L K+   DG+KTG
Sbjct: 174 AEDLATLAQATIEETPDLYKRFYATKSFTWGQTMGGSAIEQANRNPILGKIAGADGLKTG 233

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +T  +G+    S       +V VV G+
Sbjct: 234 HTEEAGYGFTGSAEQDGRRLVMVVAGL 260


>gi|23099281|ref|NP_692747.1| D-alanyl-D-alanine carboxypeptidase [Oceanobacillus iheyensis
           HTE831]
 gi|22777510|dbj|BAC13782.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
           [Oceanobacillus iheyensis HTE831]
          Length = 367

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 106/224 (47%), Gaps = 9/224 (4%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MT  I  E        L+ Q+  S+ A     S +YL++      +  +  L+ 
Sbjct: 56  ASITKIMTAIIAIE-----SGMLDEQVTTSRKAIYTEGSSIYLEQGEEIPLKDLVYGLML 110

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           RS ND + A  E + GSE+ F  LM+ KAK +GM+NT + N  GL      ++A D AIL
Sbjct: 111 RSGNDAAVAIAEHVGGSEEGFVYLMNEKAKWLGMENTHFDNPHGLDSDTHYSSAYDMAIL 170

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRI--ITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVT 254
                 N P + +      +   NR     N NKLL +++    G KTGYT+ +G  +VT
Sbjct: 171 MKYAMDN-PMFREVSQSDSYLSNNRTYHWQNKNKLLTRLYEYCTGGKTGYTKATGRTLVT 229

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
           S       ++AV +  P   +      E      E KT++ + T
Sbjct: 230 SAHKNGMDLIAVTLDAPDDWQDHIGMFEWGFEQFEMKTVQEEGT 273


>gi|258590884|emb|CBE67179.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [NC10 bacterium
           'Dutch sediment']
          Length = 355

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 108/207 (52%), Gaps = 17/207 (8%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           E R PAS TK+MT  +I E  Q     L+ ++ +S+ AA  + + L L+          +
Sbjct: 112 ERRSPASTTKIMTALLILEEGQ-----LDDKVLISERAAAVSGTGLGLRRGQRVVLRDLL 166

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
            A++ +SAND + A  E + GSE++F   M+ KA  +GMQ T + N  GL  ++  +TA 
Sbjct: 167 WAILLKSANDAALAAAEHVGGSEEQFVARMNAKAASLGMQGTQFSNPHGLDHQDHYSTAF 226

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRY-----RN------RIITNHNKLLNKMHNIDGIK 241
           D AIL     +N P + +    R+ +      RN      R+I  HN+LL +    DG+K
Sbjct: 227 DLAILARQALRN-PTFARMVQTREAQVAILTGRNGSVVKRRVIRTHNQLLGQFSGADGVK 285

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           TGYT  +G  +V S    D  ++AV++
Sbjct: 286 TGYTSLAGRCLVASATRGDHQLIAVLL 312


>gi|229090965|ref|ZP_04222189.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-42]
 gi|228692366|gb|EEL46101.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-42]
          Length = 317

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 125/239 (52%), Gaps = 21/239 (8%)

Query: 52  PKY--------SSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           PKY        ++++ID  N + +    ++E   PAS++KMMT Y++ E + + K+    
Sbjct: 56  PKYIPPEVDAKAAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM
Sbjct: 116 PVKMSAKAAQTEGARIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFVQLM 175

Query: 163 SNKAKKIGMQN-TIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--K 216
           + KAK++ M +   + NASGL + +      TA D A L   L K++P+  +   +R  +
Sbjct: 176 NAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQ 235

Query: 217 FRYRNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
             + N  + + N +LNK      +  IDG+KTG+T ++G+    + +  +  I+ VVMG
Sbjct: 236 LAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGNTRIITVVMG 294


>gi|304316798|ref|YP_003851943.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778300|gb|ADL68859.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 384

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/252 (32%), Positives = 122/252 (48%), Gaps = 22/252 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++IV+D    ++   K    + P AS TK+MTL +  EY      +LN  + VSK AA+ 
Sbjct: 34  AAIVMDQKSGRILYEKNINEKLPMASTTKIMTLLLALEYG-----NLNDIVTVSKRAASV 88

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S ++L      +    +  L+  S ND +TA  E I GS +KFA +M+ KAK IG  +
Sbjct: 89  GGSSIWLAPGEKLSLIDLLYGLMLNSGNDAATAIAEHIGGSVEKFAEMMNKKAKDIGAYS 148

Query: 174 TIYKNASGLH--DKNQITTARDQAILGILLRKNFPQYYKYFSI---------RKFRYRNR 222
           T +   SGL     N  TTA D   L ++ R  F  Y K+  I            R  +R
Sbjct: 149 TNFVTPSGLDIGINNHYTTAYD---LALITRYAFNNYSKFAEIVSTKEKTIPWSGRDYDR 205

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NK+L +    DG+KTG+T  +G  +V S       +++VV+      E  QK L+
Sbjct: 206 YLRNKNKMLWQYEGGDGVKTGFTNKAGRCLVASATRDGHRLISVVLNSGPMWEDSQKILD 265

Query: 283 LITSFLEKKTLK 294
              SF + K LK
Sbjct: 266 Y--SFEKYKPLK 275


>gi|291530422|emb|CBK96007.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum 70/3]
          Length = 409

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 115/235 (48%), Gaps = 6/235 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++IV +V+  Q+        R P AS+TK+M L I  E ++     ++T I  +  A   
Sbjct: 62  AAIVTEVSTGQVLYEHNSHERLPMASVTKLMCLLIWAEEMEKGTFGMDTVITATARANAM 121

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           + S ++L      +    I +++  SAND   A  E+I+G+E+ F   M+ +A+++GM +
Sbjct: 122 DGSVIWLNVGEEMSAYDMIRSVVIASANDACVAVCEYITGTEEMFVERMNKRAQELGMSD 181

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNRIITNHNK 229
           T Y N  G       T+A D A+L   + + +  Y ++F+ R    +   R   + N NK
Sbjct: 182 THYDNCVGFDSDTHYTSAYDTALLSAAVSE-YDCYNEFFATRLDYVREGERQTQLLNTNK 240

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           ++ +   I G KTG T  +G  +    +  +  + AV +G   S++R     +L+
Sbjct: 241 MMQRYDGIIGGKTGTTDKAGCCLAVWAKRGNMKLCAVALGCKESEQRFTACTDLL 295


>gi|237747199|ref|ZP_04577679.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacter formigenes HOxBLS]
 gi|229378550|gb|EEO28641.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacter formigenes HOxBLS]
          Length = 383

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 127/238 (53%), Gaps = 9/238 (3%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-- 111
           S +++DV  NQ+   K  + R  + + +K+MT Y++F  L+  ++ L+  I VS+  A  
Sbjct: 34  SWLLMDVVSNQVLASKNADDRIASRTASKLMTAYLVFGALRDGRVSLDQPIVVSEQVARL 93

Query: 112 -TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            T  P +++L+     T  + +L LI R  +D + A    +SG EK F  LM+ +A ++G
Sbjct: 94  GTGGP-EMFLQNGGTATVRELLLGLIVRGGDDAALALAIAVSGDEKTFVELMNREAVRLG 152

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M++T++ +  G   K   +T  D A+L + + ++F  Y  +FS ++F Y    + N N+L
Sbjct: 153 MKSTLFAHPYGSSGKEGYSTPSDMAVLALGVMRDFSDYSSFFSTKEFSYNGIRMRNGNRL 212

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLR----YKDDPIVAVVMGMPTSQERDQKALELI 284
           L     +DG+    +    + ++ S +      +  ++++V G  + Q R Q++L+L+
Sbjct: 213 LWLDGAVDGLFATNSPEESYTLLASAKRDSVLGERRMLSIVTGAVSDQARMQESLKLL 270


>gi|302871919|ref|YP_003840555.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574778|gb|ADL42569.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 373

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 124/255 (48%), Gaps = 32/255 (12%)

Query: 34  ILFLSIIMISMASELHAKPKY-------SSIVIDVNKNQMTG---FKQDEP-RYP-ASLT 81
           ++FL I+   +A   +A  K        S+I I+     MTG   FK++E  + P AS T
Sbjct: 8   LIFLLIVSTELAKICYANEKNLPQVSSKSAIAIE----WMTGKILFKKNEDLKLPMASTT 63

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  ++ E        +N +I +   A     S +YL++         +  L+  S N
Sbjct: 64  KIMTAILVLE-----NCDVNKEIEIPPQAVGVPGSSMYLEKGEKLKIIDLLYGLMLSSGN 118

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D + A     +G  KKF  LM+ KAK++G+ NT++ +  GL      TTA D A+L    
Sbjct: 119 DAAVALAIVTAGDVKKFVNLMNKKAKELGLSNTVFSSPHGLEQGQHYTTAHDLALLTAYA 178

Query: 202 RKN--FPQYYKY------FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            KN  F Q  K       ++ R +   NRI+ N NK+L      +G+KTG+T+ +G  +V
Sbjct: 179 MKNPIFRQIVKTTEKEVPWTTRPY---NRILRNKNKMLRLYPGAEGVKTGFTKKAGRCLV 235

Query: 254 TSLRYKDDPIVAVVM 268
           TS    D  ++ VV+
Sbjct: 236 TSACRDDFRVICVVL 250


>gi|213853083|ref|ZP_03382615.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 222

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 6/164 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 59  DEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AK++G+ NT ++   GL   
Sbjct: 119 VSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAP 178

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
            Q +TARD A+LG  L  + P  Y     ++F + N    N N+
Sbjct: 179 GQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRNR 222


>gi|295109007|emb|CBL22960.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162]
          Length = 415

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 122/251 (48%), Gaps = 20/251 (7%)

Query: 49  HAKPKY-----SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNT 102
           H+  KY      +++I+ +  ++   K +  R+  AS TK+MT  +  E        LN 
Sbjct: 165 HSGLKYNLSSDCALLINADTGKVLYSKNENLRHANASTTKIMTCILALE-----NSSLND 219

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           ++  SK AA+  PSKLY K    F     + +L+  S ND + A  E ISGS   FA LM
Sbjct: 220 KVTFSKKAASVEPSKLYAKAGETFYMRDLLYSLMVPSHNDTAIAIAEHISGSTSAFAQLM 279

Query: 163 SNKAKKIGMQNTIYKNASGLHDK-NQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-- 219
           + KA+++G  NT +   +GL    N  TTA D AI+     +N P + K  + + + +  
Sbjct: 280 NKKARELGCTNTHFVTPNGLDAGLNHYTTASDLAIIARYAIQN-PTFQKLINTKSYSFKS 338

Query: 220 ----RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-KDDPIVAVVMGMPTSQ 274
               R   +   N LL     + G+KTG T  +G+  V   R  K +  ++V +G PTS 
Sbjct: 339 LNTKRYFTVATTNALLGTQTGVVGLKTGVTNKAGYCFVGLCRSRKGNTYISVTLGGPTSA 398

Query: 275 ERDQKALELIT 285
            R + +  L+T
Sbjct: 399 ARWRDSKILLT 409


>gi|58617588|ref|YP_196787.1| penicillin-binding protein dacF precursor [Ehrlichia ruminantium
           str. Gardel]
 gi|58417200|emb|CAI28313.1| Penicillin-binding protein dacF precursor [Ehrlichia ruminantium
           str. Gardel]
          Length = 290

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 117/229 (51%), Gaps = 5/229 (2%)

Query: 51  KPKYSSIVI-DVNKNQMTGFKQDEPR--YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS 107
           + K S I I D++ N M  F+ +  R  + +S+  +MTLY+ F Y++   + +  +   S
Sbjct: 30  QTKASEIAIFDLSSNIML-FEHNIDRKIHLSSMNNLMTLYVAFSYMKPGFVRMEDKYIAS 88

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
           K A  Q    ++L+          +  +IT SAND S    E I+GS++ F   M+  A+
Sbjct: 89  KEAWQQGGPSIFLRAGQPVPVRDLLDGIITLSANDASITLAEGIAGSQENFVKEMNQMAR 148

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           K+ + ++ + N +GL D NQ T+ARD   L   L  +FP+YY  FS +  ++ N    + 
Sbjct: 149 KLNLTSSNFTNVTGLLDSNQTTSARDLITLAQRLFNDFPEYYHLFSKKDLKFNNIYQKST 208

Query: 228 NKLLNKMHNIDGIKTGYT-RNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           N LLN    IDG+    T ++     + S++     I+ ++ G+  ++E
Sbjct: 209 NTLLNSDIAIDGMAVKNTDQDDNHGAIISIKKDGRRILLLINGLENNEE 257


>gi|57239549|ref|YP_180685.1| penicillin-binding protein dacF precursor [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58579535|ref|YP_197747.1| penicillin-binding protein dacF precursor [Ehrlichia ruminantium
           str. Welgevonden]
 gi|57161628|emb|CAH58557.1| putative exported D-alanyl-D-alanine carboxypeptidase [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58418161|emb|CAI27365.1| Penicillin-binding protein dacF precursor [Ehrlichia ruminantium
           str. Welgevonden]
          Length = 290

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 117/229 (51%), Gaps = 5/229 (2%)

Query: 51  KPKYSSIVI-DVNKNQMTGFKQDEPR--YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS 107
           + K S I I D++ N M  F+ +  R  + +S+  +MTLY+ F Y++   + +  +   S
Sbjct: 30  QTKASEIAIFDLSSNIML-FEHNIDRKIHLSSMNNLMTLYVAFSYMKPGFVRMEDKYIAS 88

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
           K A  Q    ++L+          +  +IT SAND S    E I+GS++ F   M+  A+
Sbjct: 89  KEAWQQGGPSIFLRAGQPVPVRDLLDGIITLSANDASITLAEGIAGSQENFVKEMNQMAR 148

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           K+ + ++ + N +GL D NQ T+ARD   L   L  +FP+YY  FS +  ++ N    + 
Sbjct: 149 KLNLTSSNFTNVTGLLDSNQTTSARDLITLAQRLFNDFPEYYHLFSKKDLKFNNIYQKST 208

Query: 228 NKLLNKMHNIDGIKTGYT-RNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           N LLN    IDG+    T ++     + S++     I+ ++ G+  ++E
Sbjct: 209 NTLLNSDIAIDGMAVKNTDQDDNHGAIISIKKDGRRILLLINGLENNEE 257


>gi|125973686|ref|YP_001037596.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           ATCC 27405]
 gi|256005769|ref|ZP_05430722.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           thermocellum DSM 2360]
 gi|281417842|ref|ZP_06248862.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           thermocellum JW20]
 gi|125713911|gb|ABN52403.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           ATCC 27405]
 gi|255990269|gb|EEU00398.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           thermocellum DSM 2360]
 gi|281409244|gb|EFB39502.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           thermocellum JW20]
 gi|316940119|gb|ADU74153.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           thermocellum DSM 1313]
          Length = 415

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 129/267 (48%), Gaps = 16/267 (5%)

Query: 34  ILFLS---IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR---YPASLTKMMTLY 87
           ILF S   +  ++   E+ A    S+I+++V + Q+    Q  P+   + +   K+MT  
Sbjct: 18  ILFFSQSPVFAVAEPPEIKAP---SAILMEVQRGQI--LYQKNPKLKLHVSCANKIMTGL 72

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           I  E +Q++   LNT I VSK A +   + L L+    +  E  I +++  SAND +   
Sbjct: 73  IALEKMQNQ---LNTNITVSKKAVSVEGAVLNLEVGGKYPVEDLIYSVLLGSANDSANVL 129

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E+I G EK F  LM+ KA+++ M++T + N +GL+D+ Q TTA D A+L          
Sbjct: 130 AEYIGGDEKGFVELMNKKAQELEMKDTYFTNPTGLYDEKQYTTAYDLAVLIRYALTKSST 189

Query: 208 YYKYFS--IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           + + FS   R +    +I+ N N+L      +DG KTGY        +T+       ++ 
Sbjct: 190 FNEMFSAKARPWVDGTQILINSNELFWSYDGVDGGKTGYNEIDRQTAITTATRNGQRLIC 249

Query: 266 VVMGMPTSQERDQKALELITSFLEKKT 292
           +V+  P     D     L   FL  +T
Sbjct: 250 IVLDSPEESMYDDSVKLLDYGFLNFRT 276


>gi|311029700|ref|ZP_07707790.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Bacillus sp. m3-13]
          Length = 414

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 115/221 (52%), Gaps = 14/221 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR--YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S I+ID +K+  T +++D  R  YPAS+TK++T  I  E     + +L   + VS+ A  
Sbjct: 36  SVILID-SKSGNTLYEKDSKREMYPASITKIVTAIIAIE-----EGNLQDIVTVSENARD 89

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK-KIGM 171
           Q+ +++YL E    T ++ +  L+  S ND  TA  E + GSEK FA  M+   K K+G+
Sbjct: 90  QDGTRVYLLEGEKVTLKKLVQGLLINSGNDAGTAIAEHLDGSEKAFAKRMNTFVKEKVGV 149

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNH 227
           +NT + N  GL+  + +TTA+D A +     KN   + +    ++  +        + NH
Sbjct: 150 KNTNFTNPHGLYHPDHVTTAQDMAKIAQYAMKN-ETFREIVGTKEMEWIGEGWETTLFNH 208

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           ++LL       G+K GY   SG  +VTS +     ++ V M
Sbjct: 209 HRLLWDYEGTTGVKNGYVPESGHTLVTSAKRDGMDLIVVTM 249


>gi|146296850|ref|YP_001180621.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410426|gb|ABP67430.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 377

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 130/265 (49%), Gaps = 22/265 (8%)

Query: 34  ILFLSIIMISMASELHAKPKY-------SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMT 85
           ++ +S+ ++S ++E +A  K        S+I I+    ++   K  + + P AS TK+MT
Sbjct: 11  LVIVSLRILSYSNECYAGLKCDIQVTAKSAIAIEWITGKILFEKNKDLKLPMASTTKIMT 70

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
             +  E        LN +I +   A     S +YL++       + +  L+  S ND + 
Sbjct: 71  AILAIE-----NCDLNKEIEIPAQAIGVPGSSIYLEKGERLKIIELLYGLMLASGNDAAA 125

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A    + G  KKF  LM+ KAK++G++NT++ +  GL +    TTA D A L     KN 
Sbjct: 126 ALAISVCGDVKKFVNLMNKKAKELGLENTMFSSPHGLEEGEHYTTAHDLARLTAYAMKN- 184

Query: 206 PQYYKYF---SIRKFRYR----NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
            Q ++     + ++ R+     +R++ N NK+L      +G+KTG+T+ +G  +VTS   
Sbjct: 185 -QTFREIVSTTQKEIRWTTRPYSRVLKNKNKMLKSYQGAEGVKTGFTKRAGRCLVTSACR 243

Query: 259 KDDPIVAVVMGMPTSQERDQKALEL 283
            D  ++ VV+  P      +K L+ 
Sbjct: 244 DDFRVICVVLNAPDMWNDTKKILDF 268


>gi|108807033|ref|YP_650949.1| Serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pestis Antiqua]
 gi|108778946|gb|ABG13004.1| Serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pestis Antiqua]
          Length = 232

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 103/194 (53%), Gaps = 10/194 (5%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A ++ AK   + +++D N  ++      + R  PASLTK+M+ Y+I + +++ K+  +  
Sbjct: 35  APQIDAK---AYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDL 91

Query: 104 IPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           + V K A AT NP     S ++LK             ++ +S ND S A  ++++GS+  
Sbjct: 92  VTVGKDAWATGNPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQDS 151

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F  LM+N AK +G+ NT +    GL    Q +TARD A+LG  L ++ P+ Y     ++F
Sbjct: 152 FVGLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEF 211

Query: 218 RYRNRIITNHNKLL 231
            +     TN N+LL
Sbjct: 212 TFNKIRQTNRNRLL 225


>gi|300814763|ref|ZP_07095011.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300511150|gb|EFK38402.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 446

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 116/225 (51%), Gaps = 15/225 (6%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTY 125
           +  +  DE R  AS +K+++++++F+ ++   +  + ++ + + ++    S   LKE   
Sbjct: 97  LEAYNIDEVRPMASTSKLVSIFVVFDKIKDGTISKSDELTIDRESSILGGSTFKLKENDK 156

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--- 182
            T +  I A +  S ND  TA  + ISGS + F++LM+ K K +G++N    N +GL   
Sbjct: 157 MTVDDLIKASMVVSGNDAITALAKHISGSVEAFSVLMNKKCKDLGLKNAHMVNPTGLTNY 216

Query: 183 --HDKNQITTARDQAILGILLRKNFPQYYKYF--SIRKFRYRNRIITNHNKLLNKMHNID 238
              D N++TT R+  IL   L K +P+   Y   +  K   RN +  N N +L  +  ID
Sbjct: 217 AIEDYNKMTT-REMFILSCELIKYYPEILNYTKEAYLKDEDRNFLEYNTNPILGIVPEID 275

Query: 239 GIKTGYTRNSGFNIVTS-------LRYKDDPIVAVVMGMPTSQER 276
           G+KTGYT  SG  ++++        + KD  +V +V G     +R
Sbjct: 276 GLKTGYTNASGRTVISTGLKKGIEGKSKDLRLVGIVTGCNGDWQR 320


>gi|167400236|ref|ZP_02305749.1| penicillin-binding protein 6 (D-alanyl-D-alaninecarboxypeptidase
           fraction C) (DD-peptidase) (DD-carboxypeptidase) (PBP-6)
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167050185|gb|EDR61593.1| penicillin-binding protein 6 (D-alanyl-D-alaninecarboxypeptidase
           fraction C) (DD-peptidase) (DD-carboxypeptidase) (PBP-6)
           [Yersinia pestis biovar Antiqua str. UG05-0454]
          Length = 231

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 103/194 (53%), Gaps = 10/194 (5%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A ++ AK   + +++D N  ++      + R  PASLTK+M+ Y+I + +++ K+  +  
Sbjct: 34  APQIDAK---AYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDL 90

Query: 104 IPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           + V K A AT NP     S ++LK             ++ +S ND S A  ++++GS+  
Sbjct: 91  VTVGKDAWATGNPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQDS 150

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F  LM+N AK +G+ NT +    GL    Q +TARD A+LG  L ++ P+ Y     ++F
Sbjct: 151 FVGLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEF 210

Query: 218 RYRNRIITNHNKLL 231
            +     TN N+LL
Sbjct: 211 TFNKIRQTNRNRLL 224


>gi|226330783|ref|ZP_03806301.1| hypothetical protein PROPEN_04704 [Proteus penneri ATCC 35198]
 gi|225201578|gb|EEG83932.1| hypothetical protein PROPEN_04704 [Proteus penneri ATCC 35198]
          Length = 239

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 113/212 (53%), Gaps = 14/212 (6%)

Query: 31  MGKILFLS----IIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMT 85
           MG +L +S     +   +A ++ AK   S +++D N  + +   K DE   PASLTK+M+
Sbjct: 16  MGLLLIISSPSFAVNNPVAPQIEAK---SYVLMDYNSGKILASEKPDERLDPASLTKIMS 72

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRS 139
            Y++ + ++  ++  +  + V + A AT NP     S ++LK             ++ +S
Sbjct: 73  SYVVGQAIKEGRMSPDDMVIVGRNAWATGNPVLKGSSLMFLKPGDQVKVIDLNRGMVIQS 132

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND S A  E I+GS++ F  LM++ AK +G++NT +K   GL  + Q TTA+D A+L  
Sbjct: 133 GNDASIALAEHIAGSQETFVDLMNSYAKNLGLKNTYFKTVHGLDSEGQYTTAQDMALLTA 192

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
            + ++ P  Y+    ++F + N    N N+LL
Sbjct: 193 AMIRDVPSEYEIHKEKEFTFNNIRQPNRNRLL 224


>gi|218680596|ref|ZP_03528493.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli CIAT 894]
          Length = 246

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 81/148 (54%), Gaps = 5/148 (3%)

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           I G+++ F   M+ +A K+GM ++ + N +GL  K Q TTARD A+L + LR++FPQY  
Sbjct: 2   IGGTQEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALRRDFPQYAG 61

Query: 211 YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           YF++  F    + + + N L+ +    DG+KTG+   SGFN + S       +V+VV+G 
Sbjct: 62  YFALEGFTNGQQNVPSLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRTLVSVVLGT 121

Query: 271 PTSQERDQKALELI-----TSFLEKKTL 293
            +   R      L+     T F   +TL
Sbjct: 122 DSLAARADATANLLQKGFTTQFPGSETL 149


>gi|284042207|ref|YP_003392547.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Conexibacter
           woesei DSM 14684]
 gi|283946428|gb|ADB49172.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Conexibacter
           woesei DSM 14684]
          Length = 326

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 19/243 (7%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           KP  + +++D    ++    + E R P AS+TKMMT  ++ E  + ++      +P++  
Sbjct: 84  KPPRAGLLVDAGSGRVLWRLEAERRLPIASVTKMMTALLVAERTKPRE-----PVPITPQ 138

Query: 110 AATQNPSKL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
           A     S +  L       TE  +  L+  S ND + A  + +SGS  +F  LM+ +A++
Sbjct: 139 AVAYTGSGVGMLPVGRRVQTETLLYGLMLPSGNDAAIALAQHVSGSVARFVRLMNARARE 198

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGI-LLRK-------NFPQYYKYFSIRKFRYR 220
           +G+  T + + SG+ D    + A D A+LG  LLR          P       IR  R  
Sbjct: 199 LGLTCTRFASPSGIVDSGNWSCAPDLALLGRELLRHRRLARVVRTPLAVMPLPIRGGRV- 257

Query: 221 NRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
              + NHN LL  +   ++GIKTGYT  +G   V S+R     ++ V++  P    + ++
Sbjct: 258 --WLANHNPLLRMRYAGVEGIKTGYTEAAGRCFVASVRRDGRRLIVVLLNSPDPGRQARR 315

Query: 280 ALE 282
            L+
Sbjct: 316 LLD 318


>gi|282883288|ref|ZP_06291884.1| putative D-alanyl-D-alanine carboxypeptidase [Peptoniphilus
           lacrimalis 315-B]
 gi|281296856|gb|EFA89356.1| putative D-alanyl-D-alanine carboxypeptidase [Peptoniphilus
           lacrimalis 315-B]
          Length = 446

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 116/225 (51%), Gaps = 15/225 (6%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTY 125
           +  +  DE R  AS +K+++++++F+ ++   +  + ++ + + ++    S   LKE   
Sbjct: 97  LEAYNIDEVRPMASTSKLVSIFVVFDKIKDGTISKSDELTIDRESSLLGGSTFKLKENDK 156

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--- 182
            T +  I A +  S ND  TA  + ISGS + F++LM+ K K +G++N    N +GL   
Sbjct: 157 MTVDDLIKASMVVSGNDAITALAKHISGSVEAFSVLMNKKCKDLGLKNAHMVNPTGLTNY 216

Query: 183 --HDKNQITTARDQAILGILLRKNFPQYYKYF--SIRKFRYRNRIITNHNKLLNKMHNID 238
              D N++TT R+  IL   L K +P+   Y   +  K   RN +  N N +L  +  ID
Sbjct: 217 AIEDYNKMTT-REMFILSCELIKYYPEILNYTKEAYLKDEDRNFLEYNTNPILGIVPEID 275

Query: 239 GIKTGYTRNSGFNIVTS-------LRYKDDPIVAVVMGMPTSQER 276
           G+KTGYT  SG  ++++        + KD  +V +V G     +R
Sbjct: 276 GLKTGYTNASGRTVISTGLKKGIEGKSKDLRLVGIVTGCNGDWQR 320


>gi|239629143|ref|ZP_04672174.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519289|gb|EEQ59155.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 530

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 120/254 (47%), Gaps = 25/254 (9%)

Query: 50  AKPKYSS---------IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           A P++ S         IV+D +    + G   D+  YPAS+TK++T  I+ E     ++ 
Sbjct: 30  AAPEWPSDVSIQADGGIVMDADTGTVLYGKNMDQQYYPASITKILTALIVLERCDLDEMV 89

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
             +   V    A    S   + E    T    + AL+  SAN+ + A    +SGS ++FA
Sbjct: 90  SFSHDDVYNVEAGS--SSAGIDEGDVLTVRDCLYALMLASANESANALACHVSGSREEFA 147

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            LM+ KA  +G   + + N SGL+D+N  TTA D A++     KN P++      R ++ 
Sbjct: 148 KLMNEKAASLGCTGSHFANPSGLNDENHYTTAHDMALIAREAIKN-PEFLAINGTRSYKL 206

Query: 220 -------RNRIITNHNKLLNKMHNI--DGI---KTGYTRNSGFNIVTSLRYKDDPIVAVV 267
                      + NH+K+LNK  ++   G    KTGYT  +G  +VT  +     ++AVV
Sbjct: 207 APTKRTPEGGYVANHHKMLNKNESVYYPGAFAGKTGYTSLAGNTLVTCAKKDGMTLIAVV 266

Query: 268 MGMPTSQERDQKAL 281
           +    S   D KA+
Sbjct: 267 LNGHQSHYSDTKAM 280


>gi|225420336|ref|ZP_03762639.1| hypothetical protein CLOSTASPAR_06680 [Clostridium asparagiforme
           DSM 15981]
 gi|225041022|gb|EEG51268.1| hypothetical protein CLOSTASPAR_06680 [Clostridium asparagiforme
           DSM 15981]
          Length = 595

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 125/274 (45%), Gaps = 30/274 (10%)

Query: 35  LFLSIIMISMASELHAKPKYSS---------IVIDVNKNQ-MTGFKQDEPRYPASLTKMM 84
           L L+  + ++     A P + S         IV++      + G   D+P YPAS+TK++
Sbjct: 7   LCLAFALCAVPMTAWAAPAWPSGVTIQADGGIVMEAGTGTVLYGKNMDQPYYPASITKIL 66

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T  I+ E     ++   +   V    A  + S   + E    T    + AL+  SAN+ +
Sbjct: 67  TALIVIESCDLDEIVTFSHDAVYNVEA--DSSSAGIDEGDQLTVRDCLYALLLASANESA 124

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  E +SG+ + FA LM+ +A  +G   + + N SGL+D+N  TTA D A +     +N
Sbjct: 125 NALAEHVSGTREAFADLMNQRAASLGCTGSHFANPSGLNDENHYTTAHDMAKIAQAAIQN 184

Query: 205 FPQYYKYFSIRKFRYRNR------------IITNHNKLLNKMHNI--DGI---KTGYTRN 247
            P + +    R +R  N              I NH+K+ N+      +G    KTGYT  
Sbjct: 185 -PTFVEICGSRTYRLPNMKRAPAEKFPDGYPIANHHKMWNRNDAAYYNGAFCGKTGYTSL 243

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           +G  +VT  +  D  ++AVV+    +   D KA+
Sbjct: 244 AGNTLVTCAKRGDMTLIAVVLNGHLTHYTDTKAM 277


>gi|317121890|ref|YP_004101893.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591870|gb|ADU51166.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           marianensis DSM 12885]
          Length = 541

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 102/201 (50%), Gaps = 14/201 (6%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           R PAS TK++T  +  EY      +L+  + VS+ AA+   S + L     +T  + +  
Sbjct: 228 RAPASTTKILTAIVALEYG-----NLDDTVTVSEYAASTEGSTMDLSAGERYTLRELLWG 282

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           L+  S ND + A  E ISGSE  FA LM+  A ++G+++T + N  GLHD    TTA D 
Sbjct: 283 LMLESGNDAAVAIAEHISGSEAAFARLMNETALRLGLRDTHFTNPHGLHDPGHYTTAYDL 342

Query: 195 AILGILLRKNFPQYYKYFSIR--KFRYRN-----RIITNHNKLLNKMHNIDGIKTGYTRN 247
           A++      N   Y+     +  K   R      RI+++ N+LL     I G+KTG T  
Sbjct: 343 AVMTRYALAN--DYFARLVCQPEKVLCRGDGDWVRILSSTNRLLWYREWIRGVKTGTTNA 400

Query: 248 SGFNIVTSLRYKDDPIVAVVM 268
           +G  +V+S       ++AVV+
Sbjct: 401 AGPCLVSSGERDGRRLIAVVL 421


>gi|315646383|ref|ZP_07899501.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           vortex V453]
 gi|315278026|gb|EFU41346.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           vortex V453]
          Length = 394

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 126/255 (49%), Gaps = 24/255 (9%)

Query: 30  LMGKILFLSIIMISMASELHAKPK-------YSSIVIDVNKNQMTGFKQDEPRYP-ASLT 81
           L+  ++ +  +++++A  ++A  +        ++ +IDV   +M   K  + R   ASLT
Sbjct: 11  LLSMLIAVCCLLVTIAPVVYADHEKGPANHAQAAALIDVTSGRMLYSKNGDERLRIASLT 70

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E+ +     L+ ++ +SK A  +  S ++LK     T E  +  L+ RS N
Sbjct: 71  KIMTAIVAIEHGK-----LDDRVKISKNAFAKEGSSIFLKLGEEMTLENLLFGLMLRSGN 125

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D +TA  E + G+E+ F +LM+ KA ++GM N+ + N  GL      ++A D A L    
Sbjct: 126 DAATAIAEHVGGTEEGFVMLMNEKAAQLGMTNSHFMNPHGLDHDEHYSSANDMAKLTAYA 185

Query: 202 RKN--FPQYYKYFSIR------KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            KN  F +  K  + +       + Y+     N NK+L      DG+KTGYT+ +   +V
Sbjct: 186 LKNPVFSEIVKTPTKKAPNPNESWDYK---WDNKNKMLRFYEGADGVKTGYTKKAFRCLV 242

Query: 254 TSLRYKDDPIVAVVM 268
           +S       I AV +
Sbjct: 243 SSATRNGQQIAAVTL 257


>gi|188585838|ref|YP_001917383.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350525|gb|ACB84795.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 408

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 124/264 (46%), Gaps = 14/264 (5%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEPRYP-ASLT 81
           NI ++  +LFL I+   ++  + A+       S I+I+    +       E  +P ASLT
Sbjct: 5   NIYIIIPLLFLMIVNPLLSPSVSAEEFDFDAESVILIEAETGRTIYENNAEKSWPPASLT 64

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MTL I  E L   +L L     VS  A     S+++L+E    T E  +  +   SAN
Sbjct: 65  KVMTLVIGLEALNEGELELEETTRVSAKANQTGGSQMFLRENQEVTIEDLLTGIAVVSAN 124

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D   A  E + GS   F   M+ KA++IG++NT +K+  GL    Q   ARD A L    
Sbjct: 125 DGCVALAEHMEGSVNNFVNRMNEKAEEIGLENTNFKDPHGLASDGQYMNARDVARLSQYA 184

Query: 202 RKNFPQYYKYFSIRKFRY--------RNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNI 252
               P+  +  SI  F++        RN ++ +H +         DG+KTG    +G+N 
Sbjct: 185 VNETPKILELESITGFQFNIESTQYNRNLMLPDHPQTTRYSYEGTDGLKTGQIEEAGYNF 244

Query: 253 VTSLRYKDDPIVAVVMGMPTSQER 276
           V + +  D  ++AVV+G     ER
Sbjct: 245 VGTAQRDDMRLIAVVLGAEEQTER 268


>gi|262283277|ref|ZP_06061043.1| penicillin-binding protein 3 [Streptococcus sp. 2_1_36FAA]
 gi|262260768|gb|EEY79468.1| penicillin-binding protein 3 [Streptococcus sp. 2_1_36FAA]
          Length = 412

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 143/283 (50%), Gaps = 28/283 (9%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTL 86
           I L+   LF S   +  A +     K ++I  D+N  ++   K+     P  SLTK+++ 
Sbjct: 5   IVLLFICLFCSFCPLVSADDFDVAAK-NAIAFDLNTGKILYEKEATSPVPIGSLTKLLSA 63

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           Y++++ ++++K+ +++Q+ +S+ A       + S L L + +Y + E+ + A +  +AN 
Sbjct: 64  YLVYDAIKAEKITMDSQVEISEYALKLTTNYDISNLPLDKGSY-SVEELLEASLIANANS 122

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------------DKNQ 187
            + A  E ISGSEKKF  LM  K K+ G+ +    N++GL+               ++NQ
Sbjct: 123 ATIALAEKISGSEKKFVDLMKAKLKEWGISDAKIVNSTGLNNSHLGDNIYPNSKKDEENQ 182

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTG 243
           + +A D A++   L K++PQ         F +    + + N +L  M      +DG+K G
Sbjct: 183 L-SAYDMALISYHLIKDYPQVLNITEKTSFNFDGLEVNSSNYMLKDMPSYRKGVDGLKIG 241

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            +   G + + S   +D  ++ VV+ +  ++E D KAL L T+
Sbjct: 242 ISDQGGLSFIASANERDMRLITVVLNVENAEE-DIKALFLATA 283


>gi|218670684|ref|ZP_03520355.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli GR56]
          Length = 152

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 90/146 (61%), Gaps = 1/146 (0%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKL 98
           + +++++ L A    +S+++D    ++   +  D   +PASLTKMMTLY+ FE L+  K+
Sbjct: 7   VTLAVSAPLAALAGNASLILDARTGKILAAENADTLNHPASLTKMMTLYLTFEALKRGKI 66

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
             +T I +SK AA + P+KL +K     T  + +  +I +SAND + A  E + GSE  F
Sbjct: 67  AWDTPIKMSKYAAARPPTKLGVKAGGTITVREAVYGMIVKSANDAAAAMAETLGGSESGF 126

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHD 184
           A +M+ KA+++GM  T++ NASGL +
Sbjct: 127 ARMMTAKARQLGMSRTVFLNASGLPN 152


>gi|295399022|ref|ZP_06809004.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110372|ref|YP_003988688.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
           sp. Y4.1MC1]
 gi|294978488|gb|EFG54084.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215473|gb|ADP74077.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
           sp. Y4.1MC1]
          Length = 379

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 105/205 (51%), Gaps = 14/205 (6%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           R  AS+TK+MT  +    L+S K+  +  + VS  A     S +YLKE         +  
Sbjct: 56  RRIASITKIMTAILA---LESGKM--DDTVTVSARAVRTEGSSIYLKEGEKIKLRDLVYG 110

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARD 193
           L+ RS ND + A  E + GS + F +LM+ KA +IGM+NT + N  GL D +N  +TA D
Sbjct: 111 LMLRSGNDAAVAIAEHVGGSVEGFVVLMNQKAAEIGMRNTEFANPHGLDDAENHYSTAYD 170

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRN------RIITNHNKLLNKMHN-IDGIKTGYTR 246
            A+L     KN  ++ K    + +R  +      R+  N NKLL K++    G KTGYT+
Sbjct: 171 MALLMQYAMKN-KEFRKISRTKVYRAPDPEGKSERVWRNKNKLLTKLYEYCTGGKTGYTK 229

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMP 271
            +   +VT+       ++AV +  P
Sbjct: 230 RANRTLVTTASKDGLDLIAVTLDAP 254


>gi|253682095|ref|ZP_04862892.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum D
           str. 1873]
 gi|253561807|gb|EES91259.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum D
           str. 1873]
          Length = 412

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 118/227 (51%), Gaps = 23/227 (10%)

Query: 57  IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +++D N  Q+   K  + +YP AS TK+MT  +  E       +LN  + V K A   + 
Sbjct: 37  VLMDKNTGQILYSKNLDTQYPPASTTKIMTALLTLE-----NSNLNDVVTVGKNAVNVDG 91

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           SK+YL E    T +  + AL+ +SAND + A  E +SGS K+F  LM+ +AK++G ++T 
Sbjct: 92  SKVYLFEGEKLTIKDLLHALLLQSANDSAIALSEHVSGSTKEFVNLMNKRAKELGCKHTN 151

Query: 176 YKNASGLHDKNQITTARDQAILGILLRK-NFPQYYKYFSIRKFRYRN--------RIITN 226
           + N  GL+D    TTARD   LG++LR+ +    +K  +     Y N        R I N
Sbjct: 152 FVNPHGLYDDKHRTTARD---LGLILRELSKHDEFKEIATTSMYYINPTNKEAKKRPIWN 208

Query: 227 HNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            +KL+ K         +G KTGYT  S  + V +    +  ++A+++
Sbjct: 209 KDKLVQKKSKYYYEGCEGGKTGYTIQSKHSFVATATRNNKSLIAILL 255


>gi|313901924|ref|ZP_07835342.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467819|gb|EFR63315.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 475

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 115/235 (48%), Gaps = 14/235 (5%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++I++D    Q+   +  +   P AS TK+MT  +  E     +  L   I  S+ A   
Sbjct: 81  AAILVDAATGQVLYARNADATMPMASTTKIMTALLAIE-----RGDLQQVITTSQRAFGV 135

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S LYL      T E+ +  L+ +S ND + A  E ++GS + F   M+ +A+++G+++
Sbjct: 136 EGSSLYLALGEQRTLEELLYGLMLQSGNDAAVAIAEGLAGSVETFVQWMNQRARELGLEH 195

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY------RNRIITNH 227
           T + +  GL  ++  T+ARD A L  +   N P + +    R++R         R++ NH
Sbjct: 196 TRFADPHGLASRDHYTSARDLATLARVALAN-PTFRRVVGTREYRMPWPEKNSERVLYNH 254

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM-PTSQERDQKAL 281
           N+ L +     G+K GYT  +   +V S +     +V V++G  PT   RD  AL
Sbjct: 255 NRFLWRYDGATGVKNGYTSAARGALVASAQRGGVELVGVLLGAHPTGMYRDMAAL 309


>gi|87199959|ref|YP_497216.1| Serine-type D-Ala-D-Ala carboxypeptidase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135640|gb|ABD26382.1| Serine-type D-Ala-D-Ala carboxypeptidase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 391

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 100/213 (46%), Gaps = 5/213 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQI---PVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           PAS+TK+MT Y+ F+ ++  KL L+ +I   P +        S ++L  +   T  + I 
Sbjct: 65  PASITKIMTSYVAFDLVRKGKLRLDQRISIRPETFRKWKNVGSTMFLPAEAQPTVAELIE 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI-TTAR 192
            ++T SAND      E   GS   F  LM+  A ++GM+++ +   +G  D+ Q   TA 
Sbjct: 125 GIVTVSANDACVVLAEGAVGSVPAFTRLMNEAALQLGMRDSHFNTPNGWMDEGQTYVTAD 184

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRII-TNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           D A L   L   FP  YK F        N I   NHN L       DG+KTG+T  +G+ 
Sbjct: 185 DLAKLSGALMTRFPDLYKRFYGHATMTWNGITQPNHNPLYGHTEGADGVKTGFTNEAGYG 244

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            V S       ++ V+ G     +R  ++  LI
Sbjct: 245 FVGSAERGGRRLIMVLGGYDRPIDRTNQSRALI 277


>gi|229917441|ref|YP_002886087.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Exiguobacterium sp. AT1b]
 gi|229468870|gb|ACQ70642.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Exiguobacterium sp. AT1b]
          Length = 415

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 120/240 (50%), Gaps = 22/240 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-- 111
           S++++DV   Q+   KQ++    PAS+TK+MT ++  E +++ KL    +I  S  A   
Sbjct: 35  SAMLVDVTTGQVLFAKQEDSMLQPASITKLMTAFLTREAIEAGKLSWTQEITPSDAALAL 94

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           T+ P  +++ L  K Y   E    ALI RSAN+ +   GE +SGSE+ F   M+ +A ++
Sbjct: 95  TRKPGLARIPLLNKPYTVKELYDAALI-RSANEAAVTLGEAVSGSEEAFVKEMNRRADEL 153

Query: 170 GMQNTIYKNASGLHDK------NQITTARDQAILGILLRKNFPQYYK-----YFSIRKFR 218
           GM  T + NASGL  +      + +T+A+D   L I     +P+        Y  +   R
Sbjct: 154 GMTQTTFANASGLDSESAGLPGDNLTSAKDLMKLAIAYLTTYPEVLDVTKRAYVDVDGVR 213

Query: 219 YR--NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           +   NR++ N +     M    G KTG T  +G+  +         +++VV+G  + + R
Sbjct: 214 FDATNRMLANRDLAYPGML---GFKTGTTNEAGYCFIGVSTRDGRTVLSVVLGATSDEGR 270


>gi|51892127|ref|YP_074818.1| D-alanyl-D-alanine carboxypeptidase-like protein [Symbiobacterium
           thermophilum IAM 14863]
 gi|51855816|dbj|BAD39974.1| D-alanyl-D-alanine carboxypeptidase-like protein [Symbiobacterium
           thermophilum IAM 14863]
          Length = 565

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 111/219 (50%), Gaps = 12/219 (5%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           I++DV     ++ +    PR  AS TK+MT  +  E     + H +  + VS  AA+Q  
Sbjct: 324 ILVDVATGAVLSEYNARAPRAIASTTKIMTALLAVE-----QGHPDAVVTVSANAASQPG 378

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           + +YL+     T  + +  L+  S ND + A  E ++GSE+ FA  M+ +A ++G QNT 
Sbjct: 379 TSVYLRAGEQRTLRELLYGLMLVSGNDAAVAIAEHLAGSEEAFARRMNLRAAELGAQNTY 438

Query: 176 YKNASGLHDK-NQITTARDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNKL 230
           +  ASGL D  N  +TA D A + +   +N P +  Y  + +      + NR +TN N  
Sbjct: 439 FVTASGLDDDVNPYSTAEDLARISLASLRN-PLFRSYMYLPQATIPGLWGNRQLTNSNLF 497

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           + +     G+K G+T  +G+ +V S       ++ V++G
Sbjct: 498 VLRYPGATGVKNGWTEKAGYTLVASAWRDGREVMLVLLG 536


>gi|315221821|ref|ZP_07863733.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus anginosus
           F0211]
 gi|315189054|gb|EFU22757.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus anginosus
           F0211]
          Length = 444

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 136/287 (47%), Gaps = 43/287 (14%)

Query: 31  MGKILFLSIIMISMASELHA--------KPKYSSIVIDVN-KNQMTGFKQDEPRYPASLT 81
           MG     +  ++ MA +++         +PK SS+++D N  N +     DE R PAS++
Sbjct: 1   MGTTTIHADELVDMAQKMYPNEKVNPINRPK-SSLIVDANTGNILWQDNIDEVRDPASMS 59

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY------LKEKTYFTTEQGILAL 135
           K+MTLY++FE +Q  KL  NT I    T   +  +K+Y      +     +T  + I   
Sbjct: 60  KLMTLYLVFEAIQQGKLSENTVIKA--TPRDEAIAKIYEISNNKIVAGVDYTVSELITMT 117

Query: 136 ITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL------------ 182
              S+N  +     ++S ++   F  +M+ KAK++GM NT + NASG             
Sbjct: 118 AVPSSNATTVMLANYLSNNDPDTFLDMMNAKAKELGMTNTKWFNASGAAAVSFKGLYTPQ 177

Query: 183 -HDKNQI--TTARDQAILGILLRKNFPQYYKY-----FSIRKFRYRNRIITNHNKLLN-- 232
            +D N    TTARD AILG    KN+P    Y      +++K          +N  L   
Sbjct: 178 RYDNNAANQTTARDLAILGYHFVKNYPNILNYTNKPVVTVKKGTPYEETFETYNYSLPGA 237

Query: 233 --KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
              +  +DG+KTG +    FN + +++  +  +++V+MG+    ++D
Sbjct: 238 RYAIKGVDGLKTGSSPQGAFNYIATIKRGEQRLISVIMGVGNWSDQD 284


>gi|326204096|ref|ZP_08193957.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium papyrosolvens
           DSM 2782]
 gi|325985863|gb|EGD46698.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium papyrosolvens
           DSM 2782]
          Length = 401

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 115/230 (50%), Gaps = 13/230 (5%)

Query: 55  SSIVIDVNKNQM----TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           ++IV+D    ++     G+K++     AS TK+MT  +  E  +  +      + VSK A
Sbjct: 59  AAIVMDAKSGRVLYEKNGYKRNSI---ASTTKIMTAIVAIENGKDDE-----DVIVSKRA 110

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A+   S++ LKE   +     + A++ RS ND + A  E I GS + FA +M+ KA +IG
Sbjct: 111 ASIGGSRVNLKEGKIYKLGNLLNAMMLRSGNDAAIAIAEHIGGSVEAFAEMMNRKAAQIG 170

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
             NT +    GL D    +T  D A++     KN  ++ K  S +   +    I N N++
Sbjct: 171 ATNTNFVTPHGLDDPQHYSTPFDLAMITQYALKN-EKFCKIVSTKSSSFEGNPINNTNEM 229

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           L+     DG+KTGYT  +G  +VTS  +    +++VV+   T   R Q +
Sbjct: 230 LSLYPGADGVKTGYTGQAGRCLVTSATHNGWKVISVVLNCSTRSVRAQNS 279


>gi|197117367|ref|YP_002137794.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Geobacter
           bemidjiensis Bem]
 gi|197086727|gb|ACH37998.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase, S11 family
           [Geobacter bemidjiensis Bem]
          Length = 287

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 119/251 (47%), Gaps = 17/251 (6%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMT 85
           R + L   ILF ++     AS     P  S+ +I VN +          R PASLTK+MT
Sbjct: 8   RVLTLTAGILFAAVCYADAASSPFVHPP-SAYLIQVNGHTYKERNAHIRRPPASLTKIMT 66

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
             I+ E     +  L+  + VS+ AA +  S++ L+     T    + A +  SAND   
Sbjct: 67  ALIVME-----RCKLDEVVVVSRGAARETGSRIGLRRGERLTVRDLLAATLMASANDACR 121

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  +   G+++ F + M+ +A+ + +QNT + NA G  +    TTA D   L +L  K  
Sbjct: 122 ALADHACGNQRDFVVQMNARARALQLQNTRFTNACGHDNAGLYTTAHD---LALLTEKAM 178

Query: 206 --PQYYKYFSIRKFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
             P + +  + ++ R       R+  + N N+L+ +     G+KTG T N+G  +V    
Sbjct: 179 QKPYFAELVARKEMRIRTLNSKRSYYLRNKNRLIGRYPGAIGVKTGTTPNAGQCLVAIAE 238

Query: 258 YKDDPIVAVVM 268
            ++  ++ V+M
Sbjct: 239 REERKVLLVIM 249


>gi|331700972|ref|YP_004397931.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus buchneri
           NRRL B-30929]
 gi|329128315|gb|AEB72868.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus buchneri
           NRRL B-30929]
          Length = 421

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 134/278 (48%), Gaps = 31/278 (11%)

Query: 30  LMGKILFLSIIM-ISMASELHAKPKY---SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
           LMG    L++ M +   S +  +P     S+I +D +  Q+   K  ++PR  AS++K+M
Sbjct: 11  LMGFFCVLTLSMTVDAKSTVTPEPAIYAKSAIAVDADSGQILYQKNANQPRAIASISKLM 70

Query: 85  TLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           T+YI+ + +++ KL  + ++ +S    K +     + + L     ++  Q + A +  SA
Sbjct: 71  TVYIVHQQIRANKLAWDDKVKISSELAKLSTASGLTNVPLTAGKAYSVRQLVNATLVESA 130

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK--------------N 186
           N  + A G+ ++G+  KFA LM+  A+KIG+ +  + NASGL +K               
Sbjct: 131 NAAALALGQKVAGTATKFAALMNKTARKIGISDGHFYNASGLTNKLTGKLALSHVSANAE 190

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN------IDGI 240
            + +A+D A+L   L + FP+           +    +T HN+L++  HN      +DG+
Sbjct: 191 NLLSAKDVALLAQKLLQKFPKVTNITEQTTSTFYGTTMTGHNQLIDD-HNLGQGVRVDGL 249

Query: 241 KTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERD 277
           KTG +  +G   V S        I+ VV+G       D
Sbjct: 250 KTGTSDKAGACFVGSATTNGKHRIITVVLGARNKSAND 287


>gi|218132659|ref|ZP_03461463.1| hypothetical protein BACPEC_00519 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992385|gb|EEC58388.1| hypothetical protein BACPEC_00519 [Bacteroides pectinophilus ATCC
           43243]
          Length = 436

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 116/246 (47%), Gaps = 27/246 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+ID +   +   K    R YPAS TK+MT  +  E        L+  I  SK AA  
Sbjct: 32  SAILIDADTGAILYEKDCHSRAYPASTTKIMTSLLAIE-----NSSLDDVITFSKAAANS 86

Query: 114 ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
              + +    +E   FT EQ + A + +SAN+V+   GE+I+GS   F+ +M+ +A+++G
Sbjct: 87  YKWDEANTGTREGEQFTMEQALYATLLKSANEVAYGIGEYIAGSIPAFSDMMNERARELG 146

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKN-------------FPQYYKYFSIRKF 217
             NT + N +GL D N  TTA D A++G     N              P   K    R F
Sbjct: 147 ALNTHFNNPNGLSDTNHYTTAYDLAMIGRACFNNSTFMTISSSVNYSIPPTNKTAETRYF 206

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER- 276
           R R+  + N N    +     G KTG+T  SG+ ++T  +  D  ++ VV        R 
Sbjct: 207 RQRHG-MANSNGY--QYEYFKGGKTGFTDESGYTLITFAQKDDMRLICVVFRESDDASRY 263

Query: 277 -DQKAL 281
            D KAL
Sbjct: 264 VDSKAL 269


>gi|323487044|ref|ZP_08092353.1| D-alanyl-D-alanine carboxypeptidase [Clostridium symbiosum
           WAL-14163]
 gi|323399635|gb|EGA92024.1| D-alanyl-D-alanine carboxypeptidase [Clostridium symbiosum
           WAL-14163]
          Length = 486

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 110/231 (47%), Gaps = 25/231 (10%)

Query: 69  FKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEK 123
           F+Q  D   YPAS+TK+MT  ++ E     +  L+  +  S+ A T        L +K  
Sbjct: 117 FEQNADTRFYPASITKLMTALLVLE-----RSSLDDTVTFSENAVTNLEAGAVTLKIKAG 171

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
             F+ +  + AL+ +SAN+V+    E ++GS   FA LM+ KA  +G  NT + N +GL+
Sbjct: 172 DKFSVKDCMYALLLKSANEVANGLAEHVAGSVSGFADLMNQKAASLGCTNTHFVNPNGLN 231

Query: 184 DKNQITTARDQAILGILLRKN-------------FPQYYKYFSIRKFRYRNRIITNHNKL 230
           D N  TTARD A++     +N             FP      ++RK    ++++   N  
Sbjct: 232 DSNHYTTARDMALIAKAAFENQTLSQIASTVSYDFPATASVPTVRKLTMGHKMVNPANG- 290

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
                 I G KTGYT  +G  +VT        ++AVV+    +   D KAL
Sbjct: 291 -EYYQGIVGGKTGYTSLAGNTLVTCAERDGKRLIAVVLKSKQTHYTDTKAL 340


>gi|83589906|ref|YP_429915.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica
           ATCC 39073]
 gi|83572820|gb|ABC19372.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica
           ATCC 39073]
          Length = 385

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 16/242 (6%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMT---GFKQDEPRYPASLTKMMTLYIIFE 91
            FL    +  A EL      ++++++ +  Q+    G ++  P  PAS TK+MT  +  E
Sbjct: 17  CFLGSSPVKAADELQITAP-AAVLMEASTGQVLYERGAREKRP--PASTTKIMTAILALE 73

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
             +     L+T I VS+ AAT   + +YL++    T    +   +  S ND + A  E +
Sbjct: 74  LGR-----LDTPIKVSENAATTPGASIYLQKGEVLTLGDLVKGALLESGNDATVAIAEGL 128

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  FA LM+ KA  +G + T + N +GL D    T+A D A++      N P + + 
Sbjct: 129 AGSEAGFAFLMNRKAWLLGARTTHFNNPNGLPDPGHYTSAYDLALIARYALGN-PVFRRL 187

Query: 212 FSIRKFRYRN----RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            +  + +       R + N N+LL      DG+KTG T  +G  +V S       ++AVV
Sbjct: 188 VATVEDQIPGPDGVRHLYNTNRLLESYPGADGVKTGTTAAAGQCLVASATRGGRQLIAVV 247

Query: 268 MG 269
           +G
Sbjct: 248 LG 249


>gi|297584338|ref|YP_003700118.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           selenitireducens MLS10]
 gi|297142795|gb|ADH99552.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           selenitireducens MLS10]
          Length = 363

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 127/261 (48%), Gaps = 19/261 (7%)

Query: 24  IQRNIQL--MGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQM-TGFKQDEPRYP 77
           I R++ +   G ILF  I+++ M  ++ A+ +  S    VID     +  G    E  YP
Sbjct: 2   ISRHVSIYAAGVILFTGIMVMLMPIQISAEDEVVSEAYAVIDAKTGTLLDGKNHREEMYP 61

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+ T  I  E+L      L+ ++ +S  A   + +++YL+E    T EQ +  ++ 
Sbjct: 62  ASLTKIATAVIAIEHLD-----LDEEVTISNKAIHADGTRVYLEEGESLTVEQLLYGIMI 116

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAK-KIGMQNTIYKNASGLHDKNQITTARDQA- 195
            SAND S A  E I+GS + F+ LM+   + +IG++NT + N  GL D+  +TTA D A 
Sbjct: 117 SSANDASIALAEHIAGSVEAFSRLMNTYIQNEIGLENTYFTNPHGLFDEEHVTTAEDMAR 176

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRI----ITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           I+   L  +   Y +      + +++      I +H+ +      +   K G+   SG  
Sbjct: 177 IMKYALEND--TYRELAEKTDYHWQSEGWDTRIFHHHAMRRHYDFVTAGKNGFVSQSGLT 234

Query: 252 IVTSLRYKDDPIVAVVMGMPT 272
           + TS       ++ V +  P+
Sbjct: 235 LATSGIQDQTELIVVNLNAPS 255


>gi|312135096|ref|YP_004002434.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor
           owensensis OL]
 gi|311775147|gb|ADQ04634.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           owensensis OL]
          Length = 382

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 120/251 (47%), Gaps = 24/251 (9%)

Query: 34  ILFLSIIMISMASELHAKPKY-------SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMT 85
           ++ L I+   +A   +A  K        S+I I+    ++   K ++ + P AS TK+MT
Sbjct: 15  LILLMIVNTEVAVTCYASEKNLPQVSSKSAIAIEWMTGKILFRKNEDLKLPMASTTKIMT 74

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
             ++ E        +N +I +   A     S +YL++         +  L+  S ND + 
Sbjct: 75  AILVLE-----NCDVNKEIEIPPQAVGVQGSSMYLEKGEKLKIIDLLYGLMLSSGNDAAV 129

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN- 204
           A     +G  KKF  LM+ KAK++G+ NT++ +  GL      TTA D A+L     KN 
Sbjct: 130 ALAIVTAGDVKKFVNLMNKKAKELGLSNTVFSSPHGLEQGQHYTTAHDLALLTAYAMKNP 189

Query: 205 -FPQYYKY------FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
            F Q  K       ++ R +   NRI+ N NK+L      +G+KTG+T+ +G  +VTS  
Sbjct: 190 IFRQIVKTTEKEVPWTTRPY---NRILRNKNKMLRLYPGAEGVKTGFTKKAGRCLVTSAC 246

Query: 258 YKDDPIVAVVM 268
             D  ++ VV+
Sbjct: 247 RDDFRVICVVL 257


>gi|51892723|ref|YP_075414.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51856412|dbj|BAD40570.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 401

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 121/236 (51%), Gaps = 15/236 (6%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           + +I++D     +   +    R +PAS TK++T  I  E     +  L+ ++ VSK AA 
Sbjct: 47  HGAILMDAATGDVLWERNAHVRLHPASTTKVLTALIALE-----RGDLDARVTVSKRAAQ 101

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S +YL+E    T    +  L+  S ND + A  E I+GS + FA LM+ +A+++G +
Sbjct: 102 TPGSSMYLREGEVHTLHDLVHGLLMLSGNDAAVAIAEHIAGSVEAFADLMNERAERLGAR 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI--RKFRY----RNRIITN 226
           N+ + N  GL     ++TA D A++     +N P + +  +   ++  Y    R  ++ N
Sbjct: 162 NSHFVNPHGLTHPEHLSTAYDLAVITRAALQN-PLFAEIVAAPQKELTYEELGRKVVLYN 220

Query: 227 HNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
            N+LL   +   DG+KTG T  +G  ++ S    D  ++AVV+   +++ R+  AL
Sbjct: 221 TNRLLRGGLPGADGVKTGTTGAAGPCLIASATRDDQKLIAVVLNA-SNRWRESAAL 275


>gi|329929810|ref|ZP_08283486.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5]
 gi|328935788|gb|EGG32249.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5]
          Length = 394

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 110/223 (49%), Gaps = 17/223 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++ +IDV   +M   K  + R   ASLTK+MT  +  E+ +     L+ ++ VSK A  +
Sbjct: 43  AAALIDVTSGRMLYSKNGDERLRIASLTKIMTAIVAIEHGK-----LDDRVKVSKNAFAK 97

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S ++LK     T E  +  L+ RS ND +TA  E + G+E+ F +LM+ KA  +GM N
Sbjct: 98  EGSSIFLKLGEEMTLENLLYGLMLRSGNDAATAIAEHVGGTEEGFVLLMNEKAASLGMTN 157

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSIR------KFRYRNRIIT 225
           + + N  GL      ++A D A L     KN  F +  K  + +       + Y+     
Sbjct: 158 SHFMNPHGLDHDEHYSSAHDVAKLTAYALKNPVFSEIVKTPTKKAPNPNEAWDYK---WD 214

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N NK+L      DG+KTGYT+ +   +V+S       I AV +
Sbjct: 215 NKNKMLRFYEGADGVKTGYTKKAFRCLVSSATRNGQQIAAVTL 257


>gi|194367412|ref|YP_002030022.1| Serine-type D-Ala-D-Ala carboxypeptidase [Stenotrophomonas
           maltophilia R551-3]
 gi|194350216|gb|ACF53339.1| Serine-type D-Ala-D-Ala carboxypeptidase [Stenotrophomonas
           maltophilia R551-3]
          Length = 298

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 134/288 (46%), Gaps = 25/288 (8%)

Query: 14  FLTYPYGSIYIQRNIQLMGKILFLSIIMISMAS------ELHAKP-KYSSIVIDVNKNQM 66
            L + YGS + Q + +   K +   +I    A+      ++ A P   SSI I+ +  ++
Sbjct: 1   MLAHSYGSTHRQDSCR---KPIHTPVIRYPRAAFPYSPPDMPAPPTALSSITIEASTFEV 57

Query: 67  TGFKQDEP---RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT---AATQNPSKLYL 120
               QD     R PASLTK+MT Y  +  L+      +  + ++         + +++ L
Sbjct: 58  --IHQDNAGVARQPASLTKLMTAYAAYACLEEGGRTWDEAVTIAAEDVHVVADDETRMGL 115

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
                 +  + +  L+  S ND + A    + GS+  F   M+  A+++G+++T + + S
Sbjct: 116 VPGEKVSLARLLEGLMIVSGNDAALAIARHLDGSQSAFLDRMNQHARQLGLRSTWFASVS 175

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI 240
           G+   +  ++ARD A+L   L  + PQ     + R F + +    N N LL     +DG+
Sbjct: 176 GITTPHHASSARDMAVLAACLLNDHPQILAVTAQRAFAHGSFSRNNQNALLGD-DGVDGL 234

Query: 241 KTGYTRNSGFNIVTS----LRYKDDPI--VAVVMGMPTSQERDQKALE 282
           KTGYT+ +GF +  +    +  +  P+  + VV+G  +   RD  A E
Sbjct: 235 KTGYTQAAGFCLAATACQPVPGRAHPVRLITVVLGSDSRDARDALARE 282


>gi|261406005|ref|YP_003242246.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           sp. Y412MC10]
 gi|261282468|gb|ACX64439.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           sp. Y412MC10]
          Length = 394

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 110/223 (49%), Gaps = 17/223 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++ +IDV   +M   K  + R   ASLTK+MT  +  E+ +     L+ ++ VSK A  +
Sbjct: 43  AAALIDVTSGRMLYSKNGDERLRIASLTKIMTAIVAIEHGK-----LDDRVKVSKNAFAK 97

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S ++LK     T E  +  L+ RS ND +TA  E + G+E+ F +LM+ KA  +GM N
Sbjct: 98  EGSSIFLKLGEEMTLENLLYGLMLRSGNDAATAIAEHVGGTEEGFVLLMNEKAASLGMTN 157

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSIR------KFRYRNRIIT 225
           + + N  GL      ++A D A L     KN  F +  K  + +       + Y+     
Sbjct: 158 SHFMNPHGLDHDEHYSSAHDVAKLTAYALKNPVFSEIVKTPTKKAPNPNEAWDYK---WD 214

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N NK+L      DG+KTGYT+ +   +V+S       I AV +
Sbjct: 215 NKNKMLRFYEGADGVKTGYTKKAFRCLVSSATRNGQQIAAVTL 257


>gi|110800730|ref|YP_696485.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens ATCC 13124]
 gi|168206144|ref|ZP_02632149.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens E str. JGS1987]
 gi|168210835|ref|ZP_02636460.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens B str. ATCC 3626]
 gi|168215430|ref|ZP_02641055.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens NCTC 8239]
 gi|169343584|ref|ZP_02864583.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens C str. JGS1495]
 gi|110675377|gb|ABG84364.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens ATCC 13124]
 gi|169298144|gb|EDS80234.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens C str. JGS1495]
 gi|170662405|gb|EDT15088.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens E str. JGS1987]
 gi|170711129|gb|EDT23311.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens B str. ATCC 3626]
 gi|182382120|gb|EDT79599.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens NCTC 8239]
          Length = 291

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 113/214 (52%), Gaps = 16/214 (7%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK++T  +   Y       L+ ++ +SKTAA+   SK+  +     T  + +  L+ 
Sbjct: 82  ASTTKILTALVAINYSD-----LDEEVTISKTAASIRGSKVGFRAGEKVTMRELLFGLMY 136

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND + A  E I GS + F+ILM++ A+ +G++++ +++  GL  +   ++A D   L
Sbjct: 137 KSGNDAAIAIAEHIGGSIENFSILMNDFARMLGLKDSNFQSPHGLDSQMHFSSAYD---L 193

Query: 198 GILLRKNFPQYY-------KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
            +L+ K   + +       K     K+ +  R  +N NK+L ++ N +G KTGYT  +G 
Sbjct: 194 AVLMSKAMEEPFFREISGTKEVGAEKYNF-TRSYSNINKMLWRLPNANGGKTGYTGQAGK 252

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +V+S+ +    I+ VV+  PT  E  ++  E +
Sbjct: 253 CLVSSVDHNGRNIIIVVLNCPTRWEATERVYEYV 286


>gi|110801499|ref|YP_699085.1| penicillin-binding protein 5* precursor [Clostridium perfringens
           SM101]
 gi|110682000|gb|ABG85370.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens SM101]
          Length = 291

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 113/214 (52%), Gaps = 16/214 (7%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK++T  +   Y       L+ ++ +SKTAA+   SK+  +     T  + +  L+ 
Sbjct: 82  ASTTKILTALVAINYSD-----LDEEVTISKTAASIRGSKVGFRAGEKVTMRELLFGLMY 136

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND + A  E I GS + F+ILM++ A+ +G++++ +++  GL  +   ++A D   L
Sbjct: 137 KSGNDAAIAIAEHIGGSIENFSILMNDFARMLGLKDSNFQSPHGLDSQMHFSSAYD---L 193

Query: 198 GILLRKNFPQYY-------KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
            +L+ K   + +       K     K+ +  R  +N NK+L ++ N +G KTGYT  +G 
Sbjct: 194 AVLMSKAMEEPFFREISGTKEVGAEKYNF-TRSYSNINKMLWRLPNANGGKTGYTGQAGK 252

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +V+S+ +    I+ VV+  PT  E  ++  E +
Sbjct: 253 CLVSSVDHNGRNIIIVVLNCPTRWEATERVYEYV 286


>gi|258516321|ref|YP_003192543.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780026|gb|ACV63920.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 373

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 17/222 (7%)

Query: 55  SSIVIDVNKNQM----TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           S++++DV   Q+      F++   R PAS TK++T  +  E        L   + +SKTA
Sbjct: 35  SAVLMDVGSGQVLYQKNAFQR---RPPASTTKILTALLALE-----GGDLGQVVTISKTA 86

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A+   S +YL+     T E+ I   + +S ND   A  E I+G+E  F  LM+ KAK++G
Sbjct: 87  ASTGESSIYLQAGENLTLEELIYGALLKSGNDSCVAIAEQIAGTEANFVQLMNEKAKQMG 146

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN----RIITN 226
             ++ + N +GL  +   +TA D A L     +N P +    S R+   R     R + N
Sbjct: 147 AMDSHFVNCNGLPAEGHYSTAYDLAKLTCYALQN-PVFNTVVSTREKVIRGPGWQRHLQN 205

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            N+LL+     DG+KTG T  +G  +V S    +  +V+VV+
Sbjct: 206 TNQLLDTYTFADGVKTGTTNAAGPCLVASATRDNRRLVSVVL 247


>gi|18310783|ref|NP_562717.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens str.
           13]
 gi|168214376|ref|ZP_02640001.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens CPE str. F4969]
 gi|18145464|dbj|BAB81507.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens str.
           13]
 gi|170714164|gb|EDT26346.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens CPE str. F4969]
          Length = 291

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 113/214 (52%), Gaps = 16/214 (7%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK++T  +   Y       L+ ++ +SKTAA+   SK+  +     T  + +  L+ 
Sbjct: 82  ASTTKILTALVAINYSD-----LDEEVTISKTAASIRGSKVGFRAGEKVTMRELLFGLMY 136

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND + A  E I GS + F+ILM++ A+ +G++++ +++  GL  +   ++A D   L
Sbjct: 137 KSGNDAAIAIAEHIGGSIENFSILMNDFARMLGLKDSNFQSPHGLDSQMHFSSAYD---L 193

Query: 198 GILLRKNFPQYY-------KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
            +L+ K   + +       K     K+ +  R  +N NK+L ++ N +G KTGYT  +G 
Sbjct: 194 AVLMSKAMEEPFFREISGTKEVGAEKYNF-TRSYSNINKMLWRLPNANGGKTGYTGQAGK 252

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +V+S+ +    I+ VV+  PT  E  ++  E +
Sbjct: 253 CLVSSVDHNGRNIIIVVLNCPTRWEATERVYEYV 286


>gi|323701270|ref|ZP_08112945.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533872|gb|EGB23736.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 414

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 126/254 (49%), Gaps = 20/254 (7%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYS---SIVIDVNKNQMTGFKQDEPR-YPASLTKMM 84
           +++  I+ + + + S+       P+ S   +++ID    Q+   K +  R YPAS TK +
Sbjct: 7   KILSVIVIVWLCLGSIPYAWAGAPEISGEAAVLIDAGTGQVLYGKDEHKRMYPASTTKTL 66

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T  +  E+ +     L   + +   A     + + L E      +  + AL+  SAND  
Sbjct: 67  TALVALEHAK-----LTDLVTIGPNALQAGGTSIGLTEGEKIPLKDLLYALMLNSANDAG 121

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  E ISGS +KFA L + +AKKIG ++T + N  G+ DKN  +TA D A++     +N
Sbjct: 122 VAIAEHISGSVEKFAALSNQEAKKIGAKDTHFTNPHGMPDKNHYSTAYDLALIARQAMQN 181

Query: 205 FPQYYKYFSIRKFRYR------NRIITNHNKLL-NKMH---NIDGIKTGYTRNSGFNIVT 254
             ++ +  S   ++         + + NHNKLL +K++      G+KTGYT  +G  ++ 
Sbjct: 182 -QEFRRIVSTVHYQVSRADPNAQKYLFNHNKLLWSKIYGYQGTTGVKTGYTVEAGQCVIA 240

Query: 255 SLRYKDDPIVAVVM 268
           S +     ++AVV+
Sbjct: 241 SAQRDGRELIAVVL 254


>gi|299534813|ref|ZP_07048142.1| penicillin-binding protein dacF precursor [Lysinibacillus
           fusiformis ZC1]
 gi|298729658|gb|EFI70204.1| penicillin-binding protein dacF precursor [Lysinibacillus
           fusiformis ZC1]
          Length = 278

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 102/194 (52%), Gaps = 18/194 (9%)

Query: 72  DEPRYPASLTKMMTLYIIFEY---LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           D   YPASLTK+MT  +  E    LQ++ + +  Q   + TA  QN S    +   + TT
Sbjct: 55  DAIIYPASLTKIMTAIVAIEMTDNLQTQTI-VEPQTIANYTA--QNASMAGFQAGDFVTT 111

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           E  +   +  S  D +    + ++GSE KF  LM+NKA+++GM +T + N SGLHD+  +
Sbjct: 112 EDLLYGTLLASGADATGTLADAVAGSEGKFVTLMNNKAQELGMHDTYFVNTSGLHDEAHV 171

Query: 189 TTARDQAILGILLRKNF--PQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNID----GI 240
           ++ RD   +  LLR     P +Y+ F+ + +     N++I   N L  K+  +D    G 
Sbjct: 172 SSVRD---ISKLLRYALENPTFYQIFTSKSYTTYVPNQLIIT-NSLFTKLPGLDSPIIGG 227

Query: 241 KTGYTRNSGFNIVT 254
           KTGYT  +G  + T
Sbjct: 228 KTGYTPEAGLCLAT 241


>gi|134300784|ref|YP_001114280.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
           MI-1]
 gi|134053484|gb|ABO51455.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
           MI-1]
          Length = 397

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 120/236 (50%), Gaps = 14/236 (5%)

Query: 54  YSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           YS++V+D    Q+   K   + R  AS TK+MT  +  E       +LN+   VS+ AA 
Sbjct: 63  YSALVMDAATGQVLFAKNPHQARAIASTTKIMTALVAIECG-----NLNSATSVSQRAAG 117

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S +YLK     T EQ +   + RS ND   A  E I+  E  F   M+ KA+++G +
Sbjct: 118 VEGSSVYLKPNEKLTLEQLLYGALMRSGNDACVAIAEQIAVREDIFVGFMNMKARQLGAK 177

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN----RIITNHN 228
           NT + N++GL + +  ++A D A++     KN P + +  S +          R+++N N
Sbjct: 178 NTHFCNSNGLPNDHHYSSAYDLALITRAALKN-PVFSRIVSTKTHVIPGTEGKRLLSNTN 236

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           K+L      DG+KTG T  +G  +V+S       ++AVV+    S +R  ++++L+
Sbjct: 237 KMLWSYQGADGVKTGTTNAAGKCLVSSASRDGRRLIAVVL---HSDDRWNESIKLL 289


>gi|299143329|ref|ZP_07036409.1| putative D-alanyl-D-alanine carboxypeptidase [Peptoniphilus sp.
           oral taxon 386 str. F0131]
 gi|298517814|gb|EFI41553.1| putative D-alanyl-D-alanine carboxypeptidase [Peptoniphilus sp.
           oral taxon 386 str. F0131]
          Length = 436

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 15/233 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE +  AS +K+++++++ + ++   +  N  + +   ++    S   LKE    T  Q 
Sbjct: 93  DEVKAMASTSKLVSIFVVMDKIKDGTIKKNDMVIIDHESSLLTGSSYKLKENDQKTVWQL 152

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL-----HDKN 186
           I A +  S ND  TA  + ISGS++ F  LM+ K +++G++N    N +GL      D N
Sbjct: 153 IKAALVVSGNDAITALAKHISGSKEAFVSLMNKKCQELGLKNAHMVNPTGLTDYMVEDYN 212

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRY--RNRIITNHNKLLNKMHNIDGIKTGY 244
           ++TT R+  IL   L K +P+  +  S+ +     RN +  N N  L  +  +DG+KTGY
Sbjct: 213 KMTT-REMFILARELIKAYPELLEITSLTEIAEPDRNYLEYNTNPALGIIKGVDGLKTGY 271

Query: 245 TRNSGFN-IVTSLR------YKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           T  +G   IVT  R       KD  ++ V++G  T  +R   A +LI   L+K
Sbjct: 272 TNAAGRCLIVTGFRKGDNTHTKDTRLIGVIIGSRTDWQRYVSATKLIGEGLDK 324


>gi|255656129|ref|ZP_05401538.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-23m63]
          Length = 394

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 145/280 (51%), Gaps = 28/280 (10%)

Query: 33  KILFLSIIMISMA-----SELHAKPKYS--SIVIDVNKNQMTGFKQDEPRYP-ASLTKMM 84
           KI+ L++I++ +      ++  +  KYS  SI+ID    ++   K+ + + P ASL+KMM
Sbjct: 7   KIISLAMILVFIIPNYSYADDKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASLSKMM 66

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T  +  E +++K++    ++ + K+ A+   S   LK+       + +  L+  S ND +
Sbjct: 67  TFLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSGNDAA 126

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--HD--------KNQITTARDQ 194
            A  + I  +++ F   M+ KAK+IGM NT + N +GL  +D        K  I+TA+D 
Sbjct: 127 IAIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENISTAKDI 186

Query: 195 AILGILLRKNFP-QYYKYFSIRKFRYRNRII--TNHNKLLNKMHNIDGIKTGYTRNSG-- 249
           AILG  +  N+  Q      +  +   +R    +N N LL  +  +DGIKTGYT N+G  
Sbjct: 187 AILGKYMFDNYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGNAGYC 246

Query: 250 --FNIVTSLRYKDDP---IVAVVMGMPTSQERDQKALELI 284
             F++V +   K++    ++ VV+G     +R   +L L+
Sbjct: 247 LSFSMVVNKNDKNEKKRRVIGVVLGTNHKNKRTSASLALL 286


>gi|294011645|ref|YP_003545105.1| D-alanyl-D-alanine carboxypeptidase [Sphingobium japonicum UT26S]
 gi|292674975|dbj|BAI96493.1| D-alanyl-D-alanine carboxypeptidase [Sphingobium japonicum UT26S]
          Length = 387

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 123/262 (46%), Gaps = 22/262 (8%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVI-----DVNKNQMTGFKQDEPRYP-ASLTKMMTLY 87
           +LF+ ++   + +   A P YSS        D++   +   K  + R P AS+ KMMT +
Sbjct: 8   LLFVGLLSTPLTA---AAPPYSSEAPIAYMKDLSSGAVLYNKGGDTRIPPASMAKMMTAH 64

Query: 88  IIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           + F  +Q   L L  +  V           Q  S ++L      + E  +  ++T S ND
Sbjct: 65  VAFRLIQKGDLKLEQKFTVRPETWQQWHGPQAGSTMFLSPGEQVSVENLLHGIVTLSGND 124

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ--ITTARDQAILGIL 200
                 E I+G+E+ F  LM+ +AK++G++N+ +  ++G  D+    +T A   A+    
Sbjct: 125 ACVVLAEGIAGTEQAFVALMNQEAKRLGLKNSNFGTSNGWPDEGVTYVTAADLAALAEAT 184

Query: 201 LRKNFPQYYKYFSIRKFRYRNRII------TNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
           + +    Y K+++ R F +   +        N N +L K+   DG+KTG+T+ +GF    
Sbjct: 185 IEETPNLYKKFYATRSFTWGKTMGGADIEQGNRNPILGKVAGADGLKTGHTQEAGFGFTG 244

Query: 255 SLRYKDDPIVAVVMGMPTSQER 276
           S   +   +V VV G+ +  +R
Sbjct: 245 SAEQEGRRLVMVVAGLTSFNQR 266


>gi|332654087|ref|ZP_08419831.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium
           D16]
 gi|332517173|gb|EGJ46778.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium
           D16]
          Length = 453

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 112/245 (45%), Gaps = 28/245 (11%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E H K   ++I++D N ++ +      +  YPAS+TK+MT  +  E ++S KL   TQ+ 
Sbjct: 32  EFHGK---NAILVDANYDEVLYEVGGHDKVYPASITKVMTALLTLEAIESGKLTAQTQVT 88

Query: 106 VSKTAAT--QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            S TAAT  +  S   +K     T EQ +  L+  SAN+ +    E + G    F  +M+
Sbjct: 89  ASATAATIPEGSSTANIKAGEVLTVEQLLYCLLLPSANEAAQILAETVGGDIDTFVGMMN 148

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS--IRKFRY-- 219
           +KAK++G +NT + N  G HD +  TT  D     I L       Y  F   +    Y  
Sbjct: 149 DKAKELGCENTHFANPHGFHDPDHYTTPYD-----ITLFMKAAMEYDLFQKIVTSPNYTI 203

Query: 220 ------RNRIITNHNKLLNKMHNID-------GIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
                   R + N N L +             G KTG T  +G  +V + +  D  +++V
Sbjct: 204 PATNLSEQRTVRNTNALTSNWTYTGYLYTPGTGGKTGSTDEAGKCLVETAKKGDTYLISV 263

Query: 267 VMGMP 271
           VMG P
Sbjct: 264 VMGEP 268


>gi|296450439|ref|ZP_06892195.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           difficile NAP08]
 gi|296879438|ref|ZP_06903432.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           difficile NAP07]
 gi|296260700|gb|EFH07539.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           difficile NAP08]
 gi|296429584|gb|EFH15437.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           difficile NAP07]
          Length = 397

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 145/280 (51%), Gaps = 28/280 (10%)

Query: 33  KILFLSIIMISMA-----SELHAKPKYS--SIVIDVNKNQMTGFKQDEPRYP-ASLTKMM 84
           KI+ L++I++ +      ++  +  KYS  SI+ID    ++   K+ + + P ASL+KMM
Sbjct: 10  KIISLAMILVFIIPNYSYADDKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASLSKMM 69

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T  +  E +++K++    ++ + K+ A+   S   LK+       + +  L+  S ND +
Sbjct: 70  TFLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSGNDAA 129

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--HD--------KNQITTARDQ 194
            A  + I  +++ F   M+ KAK+IGM NT + N +GL  +D        K  I+TA+D 
Sbjct: 130 IAIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENISTAKDI 189

Query: 195 AILGILLRKNFP-QYYKYFSIRKFRYRNRII--TNHNKLLNKMHNIDGIKTGYTRNSG-- 249
           AILG  +  N+  Q      +  +   +R    +N N LL  +  +DGIKTGYT N+G  
Sbjct: 190 AILGKYMFDNYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGNAGYC 249

Query: 250 --FNIVTSLRYKDDP---IVAVVMGMPTSQERDQKALELI 284
             F++V +   K++    ++ VV+G     +R   +L L+
Sbjct: 250 LSFSMVVNKNDKNEKKRRVIGVVLGTNHKNKRTSASLALL 289


>gi|262067346|ref|ZP_06026958.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378909|gb|EFE86427.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium
           periodonticum ATCC 33693]
          Length = 424

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 131/256 (51%), Gaps = 11/256 (4%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           + ++ D+N N +   K  +  YP AS+TK+M+L + F+ + +  + L+  + +SKT    
Sbjct: 171 AVLIGDLNGNVIFS-KNPDTMYPLASVTKVMSLLVTFDEINAGNIGLHDSVRISKTPLKY 229

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQ 172
             S + LKE   F  E  I A    SAN+ + A  E++  GS   F   M+ K K++G+Q
Sbjct: 230 GGSGIPLKEGQIFILEDLIKASAVYSANNATYAMAEYVGEGSIFNFVAKMNRKLKQLGLQ 289

Query: 173 NTI-YKNASGLHDKNQITTARDQAILGIL-LRKNFPQYYKYFSIRKFR----YRNRI-IT 225
           N I Y   +GL  +N      +    GI  L     +Y+KY  I   +    + ++I I 
Sbjct: 290 NDIKYYTPAGLPTRNTKMPMDEGTPRGIYKLSIEALKYHKYIEIAGIKNTKIHNDKISIR 349

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N N L+ +   + GIKTG+ + + +NI  +++++   ++ VVMG  T + RD     +I 
Sbjct: 350 NRNHLIGE-DGVYGIKTGFHKEAKYNITVAVKFEGIDLIIVVMGGETYKTRDDLVRTIIA 408

Query: 286 SFLEKKTLKHQQTHRK 301
           +  E  T+++ Q  RK
Sbjct: 409 NLKENYTVRNGQIIRK 424


>gi|228952885|ref|ZP_04114953.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228806795|gb|EEM53346.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 307

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 132/252 (52%), Gaps = 23/252 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+I+ N  ++   K +E P   A+L+K+MT YI+ E L  +K+ L+  + +S      
Sbjct: 37  SAILINANSGEIVYKKNEETPVQSAALSKLMTEYIVLEQLNDRKIQLDDLVQISNEVFRV 96

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG-MQ 172
             S + +      T    + AL+    N  + A  E I+G+E  F +LM+ KAK++  +Q
Sbjct: 97  ETSPIQVTSNDKTTVRDLLHALLLAGNNRSALALAEHIAGNEDNFTVLMNKKAKELKLLQ 156

Query: 173 NTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIITNH 227
            + + N++G++   DK   TTA D A L   L K+FP        +  +F +++  + N 
Sbjct: 157 PSPFLNSTGINNDTDKQSTTTAIDAAKLAAKLVKDFPDVLNITKLTSYQFTFKDSQVFNT 216

Query: 228 NKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           NK+   LN   K+  +DG++T ++ N  ++ V++ +  D  +++V++      + D++ +
Sbjct: 217 NKMIYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLGDTRLISVIL------DADEENI 270

Query: 282 ELITSFLEKKTL 293
               SF+E K L
Sbjct: 271 ----SFIETKKL 278


>gi|284043333|ref|YP_003393673.1| serine-type D-Ala-D-Ala carboxypeptidase [Conexibacter woesei DSM
           14684]
 gi|283947554|gb|ADB50298.1| Serine-type D-Ala-D-Ala carboxypeptidase [Conexibacter woesei DSM
           14684]
          Length = 434

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 128/288 (44%), Gaps = 26/288 (9%)

Query: 50  AKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           A PK S+    V +V+  Q + G    + R  AS TK+MT  +  E     KL L     
Sbjct: 53  APPKLSAPAAAVFEVSSGQPLYGVDAGDRRLIASTTKIMTALVAVE-----KLPLGRVCT 107

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
               AAT   +++ L++    +    + AL+  SAND +       +GS   F  LM+ K
Sbjct: 108 APAYAATPAETQIGLRQGERMSVRDLLRALMLPSANDAAATLAVCAAGSRGAFIDLMNAK 167

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN---- 221
           A+++ + +T +    GL      +TA D A LGI LR+  P   +   +R    R     
Sbjct: 168 ARELRLADTHFATPVGLDSPANYSTAADLARLGIALRQK-PFLARTVDLRSAVLRTGAFP 226

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           R + N N L+  +  +DG+KTG+T  +G+ +V S        VA VMG P+   RD  AL
Sbjct: 227 RTVVNRNGLVQSVPWVDGVKTGHTNAAGYLLVASSTRDGLSFVAAVMGTPSESARDADAL 286

Query: 282 ELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKID 329
            L+             THR     +T +K   +  + K  Y    KID
Sbjct: 287 ALLR--------WAYATHRI----ATPVKSGAVFARAKLKYRPEDKID 322


>gi|228939672|ref|ZP_04102254.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228972534|ref|ZP_04133140.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228787171|gb|EEM35144.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820010|gb|EEM66053.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326940266|gb|AEA16162.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 338

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 133/252 (52%), Gaps = 23/252 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+I+ N  ++   K +E P   A+L+K+MT YI+ E L  +K+ L+  + +S      
Sbjct: 37  SAILINANSGEIVYKKNEETPVQSATLSKLMTEYIVLEQLNDRKIQLDDFVQISNEVFRV 96

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG-MQ 172
             S + +      T    + AL+    N  + A  E I+G+E  F ILM+ KAK++  +Q
Sbjct: 97  ETSPIQVTSNDKTTVRDLLHALLLAGNNRSALALAEHIAGTEDNFTILMNKKAKELQLLQ 156

Query: 173 NTIYKNASGL-HDKNQ--ITTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIITNH 227
            + + N++G+ HD N+   TTA D A L   L K+FP        +  +F +++  + N 
Sbjct: 157 PSPFLNSTGINHDTNKQSTTTAIDAAKLAARLVKDFPDVLNITKLTSYQFTFKDSQVFNT 216

Query: 228 NKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           NK+   LN   K+  +DG++T ++ N  ++ V++ +  D  +++V++      + D++ +
Sbjct: 217 NKMIYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLGDTRLISVIL------DADEENI 270

Query: 282 ELITSFLEKKTL 293
               SF+E K L
Sbjct: 271 ----SFIETKKL 278


>gi|228908280|ref|ZP_04072125.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           200]
 gi|228851321|gb|EEM96130.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           200]
          Length = 338

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 135/253 (53%), Gaps = 25/253 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDE--PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S+I+I+ N  ++  +K+DE  P   A+L+K+MT YI+ E L  +K+ L+  + +S     
Sbjct: 37  SAILINANSGEIV-YKKDEETPVQSAALSKLMTEYIVLEQLNDRKIQLDDFVQISNEVFR 95

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG-M 171
              S + +      T    + AL+    N  + A  E I+G+E  F +LM+ KAK++  +
Sbjct: 96  VETSPIQVTSNDKTTVRDLLHALLLAGNNRSALALAEHIAGNEDNFTMLMNKKAKELKLL 155

Query: 172 QNTIYKNASGL-HDKNQ--ITTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIITN 226
           Q + + N++G+ HD N+   TTA D A L   L K+FP        +  +F +++  + N
Sbjct: 156 QPSPFLNSTGINHDTNKQSTTTAIDAAKLAARLVKDFPDVLNITKLTSYQFTFKDSQVFN 215

Query: 227 HNKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
            NK+   LN   K+  +DG++T ++ N  ++ V++ +  D  +++V++      + D++ 
Sbjct: 216 TNKMIYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLGDTRLISVIL------DADEEN 269

Query: 281 LELITSFLEKKTL 293
           +    SF+E K L
Sbjct: 270 I----SFIETKKL 278


>gi|15639787|ref|NP_219237.1| serine-type D-Ala-D-Ala carboxypeptidase (dacC) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189026025|ref|YP_001933797.1| serine-type D-Ala-D-Ala carboxypeptidase [Treponema pallidum subsp.
           pallidum SS14]
 gi|3323112|gb|AAC65769.1| serine-type D-Ala-D-Ala carboxypeptidase (dacC) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018600|gb|ACD71218.1| serine-type D-Ala-D-Ala carboxypeptidase [Treponema pallidum subsp.
           pallidum SS14]
 gi|291060158|gb|ADD72893.1| serine-type D-Ala-D-Ala carboxypeptidase [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 490

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 103/229 (44%), Gaps = 26/229 (11%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI--PVSKTAATQNP--SKLYLK 121
           +  F  D P  PASL K++T  ++ E L+  +LH   +I  P++ +A    P  S ++L+
Sbjct: 112 LASFCADLPLPPASLAKLVTCAVVMEALERGELHWQQRIRVPLAGSAQAFAPGSSLIFLR 171

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
              Y +    +  +   S ND +      ++GS   F   M+   +K G+  T +   SG
Sbjct: 172 TGEYISVHDLLAGMNIASGNDAAYTLAYAVAGSIPAFCTRMNTLVQKWGLTRTRFVEPSG 231

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNH------NKL 230
           L + N +TTARD  +      + +P+    F  R +  R+       I  H      N L
Sbjct: 232 LSEHN-VTTARDFVLFCCQYVRRWPENLARFHARSYFQRSNSPATSRIPPHTRFPATNTL 290

Query: 231 L----------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           L            +   DG+KTGY R SGFN+  S    D  I+AV++G
Sbjct: 291 LAATAARGNVSTAVPGCDGLKTGYIRESGFNVALSSLRGDTRIIAVILG 339


>gi|229029678|ref|ZP_04185753.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1271]
 gi|228731620|gb|EEL82527.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1271]
          Length = 317

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 125/236 (52%), Gaps = 16/236 (6%)

Query: 47  ELHAKPKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+ AK   ++++ID  N + +    ++E   PAS++KMMT Y++ E + + K+     + 
Sbjct: 62  EIDAK---AAMIIDSSNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVRWEDPVK 118

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ +EK F   M+ K
Sbjct: 119 MSVKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFVQRMNEK 178

Query: 166 AKKIGMQN-TIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYFSIR--KFRY 219
           AK++ M +   + NASGL + +      TA D A L   L K++P+  +   +R  +  +
Sbjct: 179 AKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQLAF 238

Query: 220 RNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            N  + + N +LNK      +  IDG+KTG+T ++G+    + +  +  I+ VVMG
Sbjct: 239 NNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGNTRIITVVMG 294


>gi|206971597|ref|ZP_03232547.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH1134]
 gi|229070033|ref|ZP_04203307.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
 gi|229079727|ref|ZP_04212260.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
 gi|206733582|gb|EDZ50754.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH1134]
 gi|228703567|gb|EEL56020.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
 gi|228713088|gb|EEL64989.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
          Length = 338

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 132/252 (52%), Gaps = 23/252 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+I+ N  ++   K +E P   A+L+K+MT YI+ E L  +K+ L+  + +S      
Sbjct: 37  SAILINANSGEIVYKKNEETPVQSAALSKLMTEYIVLEQLNDRKIQLDDLVQISNEVFRV 96

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG-MQ 172
             S + +      T    + AL+    N  + A  E I+G+E  F +LM+ KAK++  +Q
Sbjct: 97  ETSPIQVTSNDKTTVRDLLHALLLAGNNRSALALAEHIAGNEDNFTVLMNKKAKELKLLQ 156

Query: 173 NTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIITNH 227
            + + N++G++   DK   TTA D A L   L K+FP        +  +F +++  + N 
Sbjct: 157 PSPFLNSTGINNDTDKQSTTTAIDAAKLAAKLVKDFPDVLNITKLTSYQFTFKDSQVFNT 216

Query: 228 NKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           NK+   LN   K+  +DG++T ++ N  ++ V++ +  D  +++V++      + D++ +
Sbjct: 217 NKMIYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLGDTRLISVIL------DADEENI 270

Query: 282 ELITSFLEKKTL 293
               SF+E K L
Sbjct: 271 ----SFIETKKL 278


>gi|289422674|ref|ZP_06424514.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus
           anaerobius 653-L]
 gi|289156853|gb|EFD05478.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus
           anaerobius 653-L]
          Length = 423

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 158/333 (47%), Gaps = 41/333 (12%)

Query: 34  ILFLSI---IMISMASELHAKPKYS------SIVIDVNKNQMTGFKQDE--PRYPASLTK 82
           I F+SI   ++I ++    A  ++S      +IV+D   +++  +++D   P   ASL+K
Sbjct: 11  IKFVSISLSLLIGLSPRSMAYTRFSDRNSRHAIVVDTKSDRIV-YEKDSLTPTAMASLSK 69

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           MMTL I F+ L+++K+ ++ Q+ +  +   ++ + + L E      +  + +++  SAND
Sbjct: 70  MMTLLITFDDLKARKVSMHDQVKILASDVNRDGTNMKLNEGDIVGLDVLLDSMMIISAND 129

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ----------ITTAR 192
            + A    + G  K F   M++KA +IGM  T++ N +GL    +           T AR
Sbjct: 130 SALAIARHVGGDYKTFVKRMNDKASEIGMTKTVFYNPNGLPIYGEKYGKKITYENTTCAR 189

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNR----IITNHNKLLNKMHNIDGIKTGYTRNS 248
           D AIL   L  N+ +     + +K R+ N        N N +L      DG+KTG+T  +
Sbjct: 190 DVAILSKFLYDNYEKELTNITSKK-RFVNTKKQIDEENTNPILPLFKESDGLKTGFTDKA 248

Query: 249 GFNIVTSLRYK-------DDPIVAVVMGMPTSQERDQKA---LELITSFLEKKTL-KHQQ 297
           G+ +  S R         D+ ++ V MG P+ + R   A   L+ IT   + K L K  +
Sbjct: 249 GYCLAYSSRTNRGGENDVDNRLIGVSMGAPSKEARRDSAYNTLDFITQKYKTKNLYKKGE 308

Query: 298 THRKDNLSS---TSLKKSLMIKKLKRTYSQFKK 327
                N++    T L     I  +KR   +FK+
Sbjct: 309 VLASKNINGMIKTDLCPDENISIIKRQDEKFKQ 341


>gi|182625716|ref|ZP_02953485.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens D str. JGS1721]
 gi|177909118|gb|EDT71593.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens D str. JGS1721]
          Length = 291

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 115/214 (53%), Gaps = 16/214 (7%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK++T  +   Y       L+ ++ +SKTAA+   SK+  +     T  + +  L+ 
Sbjct: 82  ASTTKILTALVAINYSD-----LDEEVTISKTAASIRGSKVGFRAGEKVTMRELLFGLMY 136

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND + A  E I GS + F+ILM++ A+ +G++++ +++  GL  +   ++A D   L
Sbjct: 137 KSGNDAAIAIAEHIGGSIENFSILMNDFARMLGLKDSNFQSPHGLDSQMHFSSAYD---L 193

Query: 198 GILLRKNFPQ-YYKYFS------IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
            +L+ K   + +++  S        K+ +  R  +N NK+L ++ N +G KTGYT  +G 
Sbjct: 194 AVLMSKAMEEPFFREISGTNEVGAEKYNF-TRSYSNINKMLWRLPNANGGKTGYTGQAGK 252

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +V+S+ +    I+ VV+  PT  E  ++  E +
Sbjct: 253 CLVSSVDHNGRNIIIVVLNCPTRWEATERVYEYV 286


>gi|302035815|ref|YP_003796137.1| putative d-alanyl-D-alanine carboxypeptidase [Candidatus Nitrospira
           defluvii]
 gi|300603879|emb|CBK40211.1| putative D-alanyl-D-alanine carboxypeptidase [Candidatus Nitrospira
           defluvii]
          Length = 309

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 108/226 (47%), Gaps = 23/226 (10%)

Query: 69  FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           F+ ++   PASLTK+M+  +I EY      HL+ ++ VS  AA  + + L L+    F  
Sbjct: 82  FESEKRLSPASLTKIMSALVILEYG-----HLDDEVTVSPKAARAHKTHLRLRTGQIFRL 136

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           E  + A++  SAND   A  E + G E +F  LM+ KA  + + NT + NA G       
Sbjct: 137 EDLLKAMLIVSANDACLAASEHVGGDEARFVDLMNAKAAALQLHNTHFSNACGFDAPEHY 196

Query: 189 TTARDQAILGILLRKNFPQYYKYFS--IRKFR--------YRNRIITNHNKLLNKMHNID 238
           +TA D A L          ++  F   +R+ R        +R  ++   N+LL ++  + 
Sbjct: 197 STAEDLAKL-----SEIALHHPVFKELVREEREIIMPINEHRAYVLRTTNRLLGRIPGVQ 251

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           G+KTG+T  +G  ++  +      ++ V++    S+ R   A  LI
Sbjct: 252 GVKTGFTSKAGRCLIAKVSQDGSDLLLVIL---NSKRRWNTATSLI 294


>gi|118444410|ref|YP_878580.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT]
 gi|118134866|gb|ABK61910.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT]
          Length = 410

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 116/226 (51%), Gaps = 21/226 (9%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +++D N  Q+   K  D P  PAS TK+MT  +  E     K +L+  + + K A   + 
Sbjct: 37  VLMDKNTGQILYSKNLDSPYPPASTTKIMTALLALE-----KCNLDDVVTIGKNATDIDG 91

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           SK+Y+ E    T    + +L+ +SAND + A  E ISGS ++F  LM+ +AK++G +NT 
Sbjct: 92  SKIYIFEGEKLTIRDLLYSLLLQSANDCAVALAEHISGSTQEFVKLMNTRAKELGCKNTN 151

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--------RIITNH 227
           + N  GL+D    T+ARD A++   L K+  + +K  +  +    N        R I N 
Sbjct: 152 FVNPHGLYDDKHRTSARDLALILRELSKH--EDFKKIATTQVYVINPTNKEPNKRFIGNK 209

Query: 228 NKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +KL+ K         +G KTGYT  S  + V +    +  ++AV++
Sbjct: 210 DKLVLKRSKCYYEGCEGGKTGYTIQSKHSFVATATRDNKSLIAVLL 255


>gi|328954547|ref|YP_004371881.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454871|gb|AEB10700.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Desulfobacca
           acetoxidans DSM 11109]
          Length = 350

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 97/196 (49%), Gaps = 11/196 (5%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS  K+ T  +    LQ     L  ++PVS  AA    SK+YLK    +     + A++
Sbjct: 56  PASTLKVGTALVAINTLQ-----LQDKVPVSVNAAQAPASKIYLKPGEIYNVNDMLYAIL 110

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             SAND + A GE +SGSE +FA  M+ + +++G   T ++ ASGL  + Q +TA D   
Sbjct: 111 LASANDAARALGERVSGSEDRFARFMTKQLREMGAYRTNFETASGLPSEGQYSTAYD--- 167

Query: 197 LGILLRKNF--PQYYKYFSIRKFRYRN-RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
           L  + RK    P   +  + + F  ++ + + NHN+ L         KTGYTR S    V
Sbjct: 168 LAFIFRKAMQNPTLARIMNTKTFTLQDGKEVYNHNRFLFTTEYAVAGKTGYTRASKHTYV 227

Query: 254 TSLRYKDDPIVAVVMG 269
              R  D  I+  +MG
Sbjct: 228 GLFRNGDKRIIVSMMG 243


>gi|229173210|ref|ZP_04300759.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
 gi|228610294|gb|EEK67567.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
          Length = 338

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 141/274 (51%), Gaps = 33/274 (12%)

Query: 34  ILFLSIIMISM----------ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
           ILFLS ++ ++             + AK   S+I+ID N  ++   K +E P   A+L+K
Sbjct: 9   ILFLSFVITALIVLYFYLYVNGPIIQAK---SAILIDANSGEVVYKKNEETPIQSATLSK 65

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           +MT YI  E L   K+ L+  + +S     A  +P ++  K+KT  T    + AL     
Sbjct: 66  LMTEYITLEQLNEGKIQLDELVKISNEVFRAETSPIQVTSKDKT--TVRDLLHALFLTGN 123

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGM-QNTIYKNASGLH---DKNQITTARDQAI 196
           N  + A  E I+G+E  F +LM+ KAK++ + Q + + NA+G++   +K   TTA D A 
Sbjct: 124 NRSALALAEHIAGNEDNFTLLMNEKAKQLKLSQPSPFLNATGMNNDTNKQSTTTAIDVAK 183

Query: 197 LGILLRKNFPQYYKYFSIR--KFRYRNRIITNHNKL---LN---KMHNIDGIKTGYTRNS 248
           L   L K+FP       +   +F +++  + N NK+   LN   K+  +DG++T ++ N 
Sbjct: 184 LATQLVKDFPDVLNITELTSYQFTFKDSKVFNTNKMIYSLNKNIKLQGVDGLQTSFSTNG 243

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            ++ V++ +  D  +++V++    S E +   +E
Sbjct: 244 NYSFVSTAKRGDTRLISVILD---SNEENSTFIE 274


>gi|83590204|ref|YP_430213.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica
           ATCC 39073]
 gi|83573118|gb|ABC19670.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica
           ATCC 39073]
          Length = 385

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 134/264 (50%), Gaps = 22/264 (8%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMI--SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           YG  ++   + L    +FLS I    + A ++ A+   S +++D    Q+   K    R 
Sbjct: 5   YGPRFLAAGVFLF---IFLSFIKPGRAAAPDIQAE---SYVLMDFRTGQVLMAKNPHERR 58

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           P ++T  +T  I    L  ++ +LN Q+  SK AA    S +YL+E    T E+ + AL+
Sbjct: 59  PQAITTKITTAI----LALERGNLNDQVIASKNAAETPESSIYLQEGETLTLEELLYALL 114

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            RSAND + A  E I GS + FA +M+ K ++IG ++T Y N  GL   +  ++A D A+
Sbjct: 115 LRSANDAAVAIAEHIGGSVENFARMMNAKVQEIGARDTHYVNPHGLTAPDHYSSAYDLAL 174

Query: 197 LGILLRKNFPQYYKYFSIRK------FRYRNRIITNHNKLLNKMH---NIDGIKTGYTRN 247
           +G     N P++ +  + R+       +   R++ N N+LL   +     DG+K GYT  
Sbjct: 175 IGRYAMMN-PKFREIVATRQRIIPWAGKPWPRLLINENRLLWGYYAYPGADGVKNGYTTP 233

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMP 271
           +G  +V S    +  ++AVVM  P
Sbjct: 234 AGQVLVASATRDNWRLIAVVMKSP 257


>gi|269102001|ref|ZP_06154698.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161899|gb|EEZ40395.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 285

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 87/152 (57%), Gaps = 1/152 (0%)

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I  S ND   A  E ++GS++ F  LM+  AK +GM++T Y N  GL + +  TT  D
Sbjct: 17  GIIVDSGNDACVAMAEHVAGSQESFVDLMNAWAKNVGMKSTHYANVHGLDNPDLYTTPYD 76

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
            ++L   + ++ P  +K +S + F Y      N N LL +K  N+DG+KTG+T N+G+++
Sbjct: 77  LSLLARAIIRDTPNEFKIYSEKSFTYNGITQYNRNGLLWDKSLNVDGMKTGHTNNAGYSL 136

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           V++       +++VVMG  +   R  ++ +L+
Sbjct: 137 VSTATEGKMRLISVVMGTKSPNARKAESKKLL 168


>gi|229160966|ref|ZP_04288955.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus R309803]
 gi|228622534|gb|EEK79371.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus R309803]
          Length = 317

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 127/253 (50%), Gaps = 23/253 (9%)

Query: 46  SELHAKPKY--------SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSK 96
           S+    PKY        ++IVID +   +     ++E   PAS++KMMT Y++ E + + 
Sbjct: 50  SDKEVPPKYIPPEINAKAAIVIDASDGDVIYQNNENEAFAPASMSKMMTAYLLLESVHNG 109

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           K+     + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ +EK
Sbjct: 110 KVRWEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEK 169

Query: 157 KFAILMSNKAKKIGMQN-TIYKNASGLHDKNQIT---TARDQAILGILLRKNFPQYYKYF 212
            F  LM+ KAK++ M     + NASGL + +      TA D A L   L K++P+  +  
Sbjct: 170 DFVQLMNAKAKQLEMSEYAKFANASGLQEPDGSETKMTAADVAKLAYNLIKDYPEILEVT 229

Query: 213 SIRKFRY---------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
            +R+ +           N ++  +NK L+ +  +DG+KTG+T ++G+    + +  D  I
Sbjct: 230 HLRQSQLAFNNTTVTNTNEMLNENNKSLH-IEGMDGLKTGFTDSAGYCFTGTAKQGDTRI 288

Query: 264 VAVVMGMPTSQER 276
           + VVMG     +R
Sbjct: 289 ITVVMGTSGKAKR 301


>gi|304406992|ref|ZP_07388646.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           curdlanolyticus YK9]
 gi|304343979|gb|EFM09819.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           curdlanolyticus YK9]
          Length = 406

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 107/221 (48%), Gaps = 13/221 (5%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++ +IDV   ++   K  DEP   ASLTK+MT  +  E       +L  ++ VS  AA +
Sbjct: 52  AAAIIDVESGRLLYSKNGDEPMRIASLTKIMTAIVAIE-----NGNLADKVKVSVRAAGK 106

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S +YL+       E  +  L+ RS ND +TA  E + GS   F  +M+ KA+ IG+++
Sbjct: 107 EGSSIYLRAGEVMKLEDMLYGLMLRSGNDAATAIAEHVGGSIDGFVKMMNEKAEWIGLKH 166

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR------IITNH 227
           + + N SGL +   ++TA D A L      N P +      R  +  N         +N 
Sbjct: 167 SRFMNPSGLDEDGHLSTANDLAKLTAYALHN-PTFAAIVKTRVKKAPNPNEQWDYSWSNK 225

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           NK+L      DG+KTGYT+ +   +V+S       + AV +
Sbjct: 226 NKMLAMYEGADGVKTGYTKAALRCLVSSATRNGQQLAAVTI 266


>gi|313891603|ref|ZP_07825210.1| serine-type D-Ala-D-Ala carboxypeptidase [Dialister microaerophilus
           UPII 345-E]
 gi|313119881|gb|EFR43066.1| serine-type D-Ala-D-Ala carboxypeptidase [Dialister microaerophilus
           UPII 345-E]
          Length = 323

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 115/235 (48%), Gaps = 14/235 (5%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S  + D N  +  G K  E R YPAS TK++T  I  E    K   LN    ++  A  Q
Sbjct: 60  SVAIADGNTGKFLGGKDSELRVYPASTTKILTCIIALEEGHDK---LNDNALITPNATKQ 116

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           + + L LK     + ++ +  ++  S ND + +  E +SG+ + F  LM+ KAK IG  N
Sbjct: 117 DGTCLGLKPDLPISLQELLYGMMLVSGNDAAVSVAETVSGNYETFIKLMNAKAKNIGAVN 176

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR---YRN---RIITNH 227
           + + NA+GL DKN  TTA D A + +   KN  Q ++      F    YR+   R I N 
Sbjct: 177 SNFVNANGLTDKNHYTTASDMAKIAVYAMKN--QNFRKIVKEPFHMMTYRDGTIRRIENR 234

Query: 228 NKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           N+ L   +   +GIKTG T  +G  +V S   +D  +V V +    ++  D K L
Sbjct: 235 NEFLESGYEGANGIKTGMTEAAGDCLVASAE-RDGHLVVVSIYNDENRWEDVKKL 288


>gi|289578077|ref|YP_003476704.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           italicus Ab9]
 gi|297544350|ref|YP_003676652.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|289527790|gb|ADD02142.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           italicus Ab9]
 gi|296842125|gb|ADH60641.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 417

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 124/254 (48%), Gaps = 26/254 (10%)

Query: 34  ILFLSIIMIS-MASELHAKPKY---SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYI 88
           ILF+ ++ I+ + + + + P+    +++++D    Q+   K    R YPAS TK++T  I
Sbjct: 10  ILFILVVQITPVYANVPSPPEIVGPTAVLMDFTTGQVLYDKNMHKRMYPASTTKILTAII 69

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
             E     K +LN  +  S      + + ++L      T EQ + A++  SAND + A  
Sbjct: 70  AIE-----KGNLNDIVTASDNVTKIDGNSIFLSPGEQLTLEQLLYAIMLESANDAAIAIA 124

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN---- 204
           E I GS + FA +M+ KAK+IG  N+ + N +GL D+N  +T  D A++     +N    
Sbjct: 125 EHIGGSVENFAKMMNEKAKEIGAYNSHFVNPNGLPDENHYSTPYDMALIARYAMQNPEFR 184

Query: 205 ---------FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
                     P   K+  +R     NR+I   +    +    DG+KTGYT  +G  +  S
Sbjct: 185 KIVTTIHYQIPPTNKFDKVRDLWLSNRLIKPSSF---RYEGADGVKTGYTVAAGQVLAAS 241

Query: 256 LRYKDDPIVAVVMG 269
              +   +++V+MG
Sbjct: 242 ATREGRRLISVIMG 255


>gi|254975737|ref|ZP_05272209.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-66c26]
 gi|255093124|ref|ZP_05322602.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CIP
           107932]
 gi|255314866|ref|ZP_05356449.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-76w55]
 gi|255517540|ref|ZP_05385216.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-97b34]
 gi|255650651|ref|ZP_05397553.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-37x79]
 gi|306520578|ref|ZP_07406925.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-32g58]
          Length = 394

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 146/283 (51%), Gaps = 34/283 (12%)

Query: 33  KILFLSIIMISMA-----SELHAKPKYS--SIVIDVNKNQMTGFKQDEPRYP-ASLTKMM 84
           KI+ L++I++ +      ++  +  KYS  SI+ID    ++   K+ + + P ASL+KMM
Sbjct: 7   KIISLAMILVFIIPNYSYADGKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASLSKMM 66

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T  +  E +++K++    ++ + K+ A+   S   LK+       + +  L+  S ND +
Sbjct: 67  TFLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSGNDAA 126

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--HD--------KNQITTARDQ 194
            A  + I  +++ F   M+ KAK+IGM NT + N +GL  +D        K  I+TA+D 
Sbjct: 127 IAIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENISTAKDI 186

Query: 195 AILGILLRKNFPQYYKYFS----IRKFRYRNRII--TNHNKLLNKMHNIDGIKTGYTRNS 248
           AILG  +   F  Y K  +    +  +   +R    +N N LL  +  +DGIKTGYT N+
Sbjct: 187 AILGKYM---FDHYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGNA 243

Query: 249 G----FNIVTSLRYKDDP---IVAVVMGMPTSQERDQKALELI 284
           G    F++V +   K++    ++ VV+G     +R   +L L+
Sbjct: 244 GYCLSFSMVVNKNEKNEKKRRVIGVVLGTNHKNKRTSASLALL 286


>gi|229178878|ref|ZP_04306238.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
 gi|228604643|gb|EEK62104.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
          Length = 338

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 132/252 (52%), Gaps = 23/252 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+I+ N  ++   K +E P   A+L+K+MT YI+ E L  +K+ L+  + +S      
Sbjct: 37  SAILINANSGEIVYKKNEETPVQSAALSKLMTEYIVLEQLNDRKIQLDDFVQISNEVFRV 96

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG-MQ 172
             S + +      T    + AL+    N  + A  E I+G+E  F +LM+ KAK++  +Q
Sbjct: 97  ETSPIQVTSNDKTTVRDLLHALLLAGNNRSALALAEHIAGNEDNFTVLMNKKAKELKLLQ 156

Query: 173 NTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIITNH 227
            + + N++G++   DK   TTA D A L   L K+FP        +  +F +++  + N 
Sbjct: 157 PSPFLNSTGINNDTDKQSTTTAIDAAKLAAKLVKDFPDVLNITKLTSYQFTFKDSQVFNT 216

Query: 228 NKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           NK+   LN   K+  +DG++T ++ N  ++ V++ +  D  +++V++      + D++ +
Sbjct: 217 NKMIYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLGDTRLISVIL------DADEENI 270

Query: 282 ELITSFLEKKTL 293
               SF+E K L
Sbjct: 271 ----SFIETKKL 278


>gi|260683741|ref|YP_003215026.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196]
 gi|260687401|ref|YP_003218535.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291]
 gi|260209904|emb|CBA63846.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196]
 gi|260213418|emb|CBE05068.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291]
          Length = 397

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 146/283 (51%), Gaps = 34/283 (12%)

Query: 33  KILFLSIIMISMA-----SELHAKPKYS--SIVIDVNKNQMTGFKQDEPRYP-ASLTKMM 84
           KI+ L++I++ +      ++  +  KYS  SI+ID    ++   K+ + + P ASL+KMM
Sbjct: 10  KIISLAMILVFIIPNYSYADGKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASLSKMM 69

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T  +  E +++K++    ++ + K+ A+   S   LK+       + +  L+  S ND +
Sbjct: 70  TFLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSGNDAA 129

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--HD--------KNQITTARDQ 194
            A  + I  +++ F   M+ KAK+IGM NT + N +GL  +D        K  I+TA+D 
Sbjct: 130 IAIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENISTAKDI 189

Query: 195 AILGILLRKNFPQYYKYFS----IRKFRYRNRII--TNHNKLLNKMHNIDGIKTGYTRNS 248
           AILG  +   F  Y K  +    +  +   +R    +N N LL  +  +DGIKTGYT N+
Sbjct: 190 AILGKYM---FDHYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGNA 246

Query: 249 G----FNIVTSLRYKDDP---IVAVVMGMPTSQERDQKALELI 284
           G    F++V +   K++    ++ VV+G     +R   +L L+
Sbjct: 247 GYCLSFSMVVNKNEKNEKKRRVIGVVLGTNHKNKRTSASLALL 289


>gi|154710434|gb|ABS84279.1| DacC [Treponema paraluiscuniculi]
          Length = 490

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 103/229 (44%), Gaps = 26/229 (11%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI--PVSKTAATQNP--SKLYLK 121
           +  F  D P  PASL K++T  ++ E L+  +LH   +I  P++ +A    P  S ++L+
Sbjct: 112 LASFCADLPLPPASLAKLVTCAVVMEALERGELHWQQRIRVPLAGSAQAFAPGSSLIFLR 171

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
              Y +    +  +   S ND +      ++GS   F   M+   +K G+  T +   SG
Sbjct: 172 TGEYISVHDLLAGMNIVSGNDAAYTLAYAVAGSIPAFCTRMNTLVQKWGLTRTRFVEPSG 231

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNH------NKL 230
           L + N +TTARD  +      + +P+    F  R +  R+       I  H      N L
Sbjct: 232 LSEHN-VTTARDFVLFCCQYVRRWPENLARFHARSYFQRSNSPATSRIPPHTRFPATNTL 290

Query: 231 L----------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           L            +   DG+KTGY R SGFN+  S    D  I+AV++G
Sbjct: 291 LAATAARGNVSTAVPGCDGLKTGYIRESGFNVALSSLRGDTRIIAVILG 339


>gi|323704094|ref|ZP_08115696.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Desulfotomaculum nigrificans DSM 574]
 gi|323530944|gb|EGB20881.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Desulfotomaculum nigrificans DSM 574]
          Length = 373

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 109/232 (46%), Gaps = 27/232 (11%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-LYLKEKTYFTTEQ 130
           D+ R PASLTK+MT  +  E     K +L   + V K AA  +  + + L        E 
Sbjct: 42  DKRREPASLTKIMTAILAIE-----KGNLKDVVTVGKKAAAVSMGQDIGLSPGDRLYLED 96

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            + A +  SAND + A GE I+GS   F  +M++KAK +GM++T Y N +G H+ N  TT
Sbjct: 97  LLKAALMYSANDSTVAIGEHIAGSHDAFIKMMNDKAKVLGMKDTRYANTNGYHNPNHYTT 156

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRY-------------------RNRIITNHNKLL 231
           A D A L     KN P +  +   R+                      R R+I N N LL
Sbjct: 157 AIDLAKLTCYALKN-PVFASFVRTREATITWLPKEKTGNPQEVQTETPRQRVIHNTNALL 215

Query: 232 -NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            +    I+G+KTG T  +G  ++ S   +   +VAVV+  P   +     LE
Sbjct: 216 ESNFEGINGVKTGTTPRAGKCLIASATREGRQLVAVVLNSPNRWDDATNLLE 267


>gi|149181680|ref|ZP_01860173.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Bacillus sp. SG-1]
 gi|148850658|gb|EDL64815.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Bacillus sp. SG-1]
          Length = 384

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 123/252 (48%), Gaps = 22/252 (8%)

Query: 34  ILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDE--PRYPASLTKMMTLYI 88
           +   S+I  S++    A P  S+   IVID +  ++  +++D   P   AS+TK+MT  +
Sbjct: 13  VFIFSVIFSSLSGTAEAAPSVSAQRAIVIDQDTGRVL-YEKDAHTPSRIASITKIMTAIL 71

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
             E   S KL     + VS  A     S +YLK       E  +  L+ RS ND + A  
Sbjct: 72  AIE---SGKLE--ETVKVSNNAVKAEGSSIYLKPGEKIKLEDLVYGLMLRSGNDSAVAIA 126

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQ 207
           E + GS   F  LM+ KA++IGM+NT + N  GL D ++  +TA D A+L     +N  +
Sbjct: 127 EHVGGSLDGFIFLMNKKAEEIGMRNTHFANPHGLDDHEDHYSTAFDMALLTKYAMQN--E 184

Query: 208 YYKYFSIRKFRY-------RNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYK 259
            YK  +  K           +R   N N+LL +++    G KTGYT+ +   +VT+    
Sbjct: 185 KYKEVAGTKVHTSPDPEHDWDRKWKNKNRLLTELYKYCTGGKTGYTKRAKRTLVTTATKG 244

Query: 260 DDPIVAVVMGMP 271
           +  ++AV +  P
Sbjct: 245 EQNLIAVTLNGP 256


>gi|294781926|ref|ZP_06747258.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp.
           1_1_41FAA]
 gi|294481737|gb|EFG29506.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp.
           1_1_41FAA]
          Length = 435

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 128/256 (50%), Gaps = 11/256 (4%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           + +V D+N N +   K  +  YP AS+TK+M+L + F+ + +  + L+  + +SKT    
Sbjct: 182 AVLVGDLNGNVIFS-KNADTMYPLASVTKVMSLLVTFDEINAGNIGLHDSVRISKTPLKY 240

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQ 172
             S + LKE   F  E  I A    SAN+ + A  E++  GS   F   M+ K K++G+Q
Sbjct: 241 GGSGIALKEGQIFILEDLIKASAVYSANNATYAMAEYVGEGSIFNFVAKMNKKLKQLGLQ 300

Query: 173 NTI-YKNASGLHDKNQITTARDQAILGIL-LRKNFPQYYKYFSIRKFR----YRNRI-IT 225
           N I Y   +GL  +N      +    GI  L     +Y KY  I   +    Y  +I I 
Sbjct: 301 NDIKYHTPAGLPTRNTKMPMDEGTPRGIYKLSIEALKYDKYIEIAGIKNTKIYNGKISIR 360

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N N L+ +   + GIKTG+ + + +NI  +++++   ++ VVMG  T + RD     +I 
Sbjct: 361 NRNHLIGE-DGVYGIKTGFHKEAKYNITVAVKFEGIDLIIVVMGGETYKTRDDLVRTIIA 419

Query: 286 SFLEKKTLKHQQTHRK 301
           +  E  T+ + Q  RK
Sbjct: 420 NLKENYTVINGQLIRK 435


>gi|312622483|ref|YP_004024096.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202950|gb|ADQ46277.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 374

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 116/249 (46%), Gaps = 14/249 (5%)

Query: 42  ISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKK 97
           I  A+E    P+ SS   I I+    ++   K  + + P AS TK+MT  ++ E      
Sbjct: 21  ICYANEKKNLPQLSSKSAIAIEWVTGKILFEKNKDLKLPMASTTKIMTAILVLE-----N 75

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
             +N +I +   A     S +YL++         +  L+  S ND + A     +G  K+
Sbjct: 76  CDVNKEIEIPPQAVGVPGSSMYLEKGEKLKIIDLLYGLMLSSGNDAAVALAIATAGDVKR 135

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSIR 215
           F  LM+ KAK +G+ NT++ +  GL      TTA D A L     +N  F Q  K   I 
Sbjct: 136 FVKLMNKKAKDLGLSNTVFSSPHGLEQGQHYTTAHDLAKLTAYAMRNPIFRQIVKTKDIE 195

Query: 216 ---KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
                R  NRI+ N NK+L      DG+KTG+T+ +G  +VTS+   D  ++ VV+  P 
Sbjct: 196 VPWTTRPYNRILRNKNKMLRLYPGADGVKTGFTKKAGRCLVTSVCRDDFRVICVVLNAPD 255

Query: 273 SQERDQKAL 281
                QK L
Sbjct: 256 MWNDTQKIL 264


>gi|253579997|ref|ZP_04857264.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848516|gb|EES76479.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus sp.
           5_1_39BFAA]
          Length = 419

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 106/217 (48%), Gaps = 16/217 (7%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK+MT  +  E        LN ++  S  AA+  PSKLY      F  +  + +L+ 
Sbjct: 205 ASTTKIMTCILALE-----NCKLNEKVKFSPYAASIEPSKLYANAGEIFYLKDLLYSLML 259

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQA- 195
            S ND + A  E +SGS  KF  LM+ KA +IG  NT +   +GL    N  TTA D A 
Sbjct: 260 PSHNDTAVAIAEHVSGSTAKFVKLMNKKAAEIGCTNTHFATPNGLDAGYNHYTTASDLAK 319

Query: 196 ILGILLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
           I    ++K  P + K  S   + +      R+  I   N LL  +  + G+KTGYT  +G
Sbjct: 320 IAQYAIKK--PMFRKLVSTGYYSFSNLNTGRSYSIGTTNALLGNVPGVQGMKTGYTNKAG 377

Query: 250 FNIVT-SLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +  V  S   + +  ++VV+G  +S  R Q +  L+T
Sbjct: 378 YCFVGLSYSARGNTYISVVLGADSSSARWQDSRTLLT 414


>gi|56963593|ref|YP_175324.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16]
 gi|56909836|dbj|BAD64363.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16]
          Length = 380

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 108/210 (51%), Gaps = 11/210 (5%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
           + +P   AS+TK+MT  +  E   S KL  +  + VSK A     S LYL      T   
Sbjct: 53  EHQPLKIASITKIMTAILAIE---SGKL--DETVTVSKRAEGTEGSSLYLVAGEKLTLRD 107

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQIT 189
            +  L+ RS ND + A  E + GS + F  LM+ KA++IGM NT+++N  GL  D++ ++
Sbjct: 108 LVYGLMLRSGNDAAIAIAEHVGGSVEGFVFLMNEKAEEIGMSNTLFRNPHGLDTDEDHLS 167

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRN---RIITNHNKLLNKMHNID-GIKTGYT 245
           +A D A+L      N  +Y    S + +R +    R+  N N+LL + ++   G KTGYT
Sbjct: 168 SAYDMALLTQYAMGN-EEYRDISSTKDYRSKGDKVRVFHNKNRLLTEKYSYSTGGKTGYT 226

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           + +   +V++       ++AV +  P   +
Sbjct: 227 KLAKRTLVSTASKDGLDLIAVTLNAPDDWD 256


>gi|239625589|ref|ZP_04668620.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519819|gb|EEQ59685.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 391

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 109/225 (48%), Gaps = 21/225 (9%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS---KLYLKEKTYFTT 128
           D   YPAS+TK+MT  ++ E       +L+ ++  S TA T   S    + +      T 
Sbjct: 33  DTKFYPASITKLMTALLVAE-----NCNLDDKVTFSSTATTNLESGAVSINMTAGDVMTV 87

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            Q + AL+ +SAN+V  A  E ++GS  KFA +M+ KA  +G  NT + N  GL+D N  
Sbjct: 88  RQCLYALLLKSANEVGNALAEHVAGSNAKFAEMMNAKAAALGCTNTHFTNPHGLNDTNHY 147

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-------ITNHNKLLNKMH-----N 236
           TT RD A++     +N        S R +     I       +T  +K+LN         
Sbjct: 148 TTPRDMALIARAAFQN-DTVKTVASTRTYTLPPTIKNPSGLTVTMGHKMLNPSDSRYYPG 206

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           + G KTGYT  +G  +VT++      ++AVVM   ++   D KA+
Sbjct: 207 VIGGKTGYTSKAGNTLVTAVEKDGVRLIAVVMKSKSTHYTDTKAM 251


>gi|222529271|ref|YP_002573153.1| serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456118|gb|ACM60380.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 372

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 116/249 (46%), Gaps = 14/249 (5%)

Query: 42  ISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKK 97
           I  A+E    P+ SS   I I+    ++   K  + + P AS TK+MT  ++ E      
Sbjct: 21  ICYANEKKNLPQLSSKSAIAIEWVTGKILFEKNKDLKLPMASTTKIMTAILVLE-----N 75

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
             +N +I +   A     S +YL++         +  L+  S ND + A     +G  K+
Sbjct: 76  CDVNKEIEIPPQAVGVPGSSMYLEKGEKLKIIDLLYGLMLSSGNDAAVALAIATAGDVKR 135

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSIR 215
           F  LM+ KAK +G+ NT++ +  GL      TTA D A L     +N  F Q  K   I 
Sbjct: 136 FVKLMNKKAKDLGLSNTVFSSPHGLEQGQHYTTAHDLAKLTAYAMRNPIFRQIVKTKDIE 195

Query: 216 ---KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
                R  NRI+ N NK+L      DG+KTG+T+ +G  +VTS+   D  ++ VV+  P 
Sbjct: 196 VPWTTRPYNRILRNKNKMLRLYPGADGVKTGFTKKAGRCLVTSVCRDDFRVICVVLNAPD 255

Query: 273 SQERDQKAL 281
                QK L
Sbjct: 256 MWNDTQKIL 264


>gi|319947350|ref|ZP_08021583.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus australis
           ATCC 700641]
 gi|319746592|gb|EFV98852.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus australis
           ATCC 700641]
          Length = 444

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 139/300 (46%), Gaps = 59/300 (19%)

Query: 33  KILFLSIIMISM-------ASEL---------------HAKPKYSSIVIDVNKNQMTGFK 70
           K+L L I+++S+       A EL               + +P+ SS+VID N   +  +K
Sbjct: 4   KLLVLGIVVLSLLRPLSIVADELVDMAQKMYPNDHVQAYNRPR-SSLVIDANTGDVL-WK 61

Query: 71  Q--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY------LKE 122
              DE R PAS++K+MTLY++FE ++  K+  +T   V+ TAA Q+ SK+Y      +  
Sbjct: 62  DNIDEVRDPASMSKLMTLYLLFESMKEGKITKDTV--VTATAADQSMSKIYEISNNNIVA 119

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASG 181
              +T  + I      S+N  +      +S  +   F   M+ K+K++GM NTI+ N SG
Sbjct: 120 GVDYTVSELITMTAVPSSNVATIMLANLLSNHDADAFIQRMNEKSKELGMTNTIWNNPSG 179

Query: 182 L---------------HDKNQITTARDQAILGILLRKNFPQYYKY-----FSIRKFRYRN 221
                           +D    TTARD AIL     K +P+   Y      ++++     
Sbjct: 180 AAISTFQGLYTSYNYPNDAANQTTARDLAILVYHFVKEYPEILSYTNQAKVTVKQGTPYE 239

Query: 222 RIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
                +N  L      +  +DG+KTG +    FN + + +  +  I++VVMG+    ++D
Sbjct: 240 ETFDTYNYSLPGARYALEGVDGLKTGSSPRGAFNYIATAKRGEQRIISVVMGVGDWSDQD 299


>gi|319939487|ref|ZP_08013847.1| D-Alanyl-D-Alanine carboxypeptidase [Streptococcus anginosus
           1_2_62CV]
 gi|319811473|gb|EFW07768.1| D-Alanyl-D-Alanine carboxypeptidase [Streptococcus anginosus
           1_2_62CV]
          Length = 458

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 134/283 (47%), Gaps = 43/283 (15%)

Query: 28  IQLMGKILFLSIIMISMASELHA--------KPKYSSIVIDVN-KNQMTGFKQDEPRYPA 78
           +  +G I   +  ++ MA +++         +PK SS+++D N  N +     DE R PA
Sbjct: 12  VLCVGTITIHADELVDMAQKMYPDEKVNPINRPK-SSLIVDANTGNILWQDNIDEVRDPA 70

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY------LKEKTYFTTEQGI 132
           S++K+MTLY++FE +Q  KL  NT I    T   +  +K+Y      +     +T  + I
Sbjct: 71  SMSKLMTLYLVFEAIQQGKLSENTVIKA--TPRDEAIAKIYEISNNKIVAGVDYTVSELI 128

Query: 133 LALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL--------- 182
                 S+N  +     ++S ++   F  +M+ KAK +GM NT + NASG          
Sbjct: 129 TMTAVPSSNATTVMLANYLSNNDPDTFLDMMNAKAKALGMTNTKWFNASGAAAVSFKGLY 188

Query: 183 ----HDKNQI--TTARDQAILGILLRKNFPQYYKY-----FSIRKFRYRNRIITNHNKLL 231
               +D N    TTARD AILG    KN+P    Y      +++K          +N  L
Sbjct: 189 TPQRYDNNAANQTTARDLAILGYHFVKNYPNILNYTNKPVVTVKKGTPYEETFETYNYSL 248

Query: 232 N----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
                 +  ++G+KTG +    FN + +++  +  +++V+MG+
Sbjct: 249 PGAKYGIEGVEGLKTGSSPRGAFNYIATIKRGEQRLISVIMGV 291


>gi|255307153|ref|ZP_05351324.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile ATCC
           43255]
          Length = 394

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 146/283 (51%), Gaps = 34/283 (12%)

Query: 33  KILFLSIIMISMA-----SELHAKPKYS--SIVIDVNKNQMTGFKQDEPRYP-ASLTKMM 84
           KI+ L++I++ +      ++  +  KYS  SI+ID    ++   K+ + + P ASL+KMM
Sbjct: 7   KIISLAMILVFIIPNYSYADDKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASLSKMM 66

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T  +  E +++K++    ++ + K+ A+   S   LK+       + +  L+  S ND +
Sbjct: 67  TFLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSGNDAA 126

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--HD--------KNQITTARDQ 194
            A  + I  +++ F   M+ KAK+IGM NT + N +GL  +D        K  I+TA+D 
Sbjct: 127 IAIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENISTAKDI 186

Query: 195 AILGILLRKNFPQYYKYFS----IRKFRYRNRII--TNHNKLLNKMHNIDGIKTGYTRNS 248
           AILG  +   F  Y K  +    +  +   +R    +N N LL  +  +DGIKTGYT N+
Sbjct: 187 AILGKYM---FDHYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGNA 243

Query: 249 G----FNIVTSLRYKDDP---IVAVVMGMPTSQERDQKALELI 284
           G    F++V +   K++    ++ VV+G     +R   +L L+
Sbjct: 244 GYCLSFSMVVNKNDKNEKKRRVIGVVLGTNHKNKRTSASLALL 286


>gi|258514292|ref|YP_003190514.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257777997|gb|ACV61891.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 409

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 125/246 (50%), Gaps = 17/246 (6%)

Query: 34  ILFLSIIMISMASELHAKPK-----YSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLY 87
           I+FL I +++ A+ + A         +++++D    Q+   K  + R YPAS TK++T  
Sbjct: 9   IIFL-IYLLAFAAPVFADDAPDITGMTAVLMDAQNMQILYNKDMQERMYPASTTKILTGI 67

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           I  E     K  ++  IPVS  AA    + + L+E    T    + AL+  S+ND + A 
Sbjct: 68  IAIE-----KGKMDDLIPVSWEAANTEGTNIGLQEGEKLTLRDLLYALLLSSSNDAAEAI 122

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--F 205
            E    S   FA++M+ KAK+IG  ++ + N  GL D++  TTA D A++     +N  F
Sbjct: 123 AEHYGKSADNFAVMMNQKAKEIGAVHSHFTNPHGLPDEDHYTTAYDLALIARYAMQNDKF 182

Query: 206 PQYYKYFSIRKFRYR---NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
            +  +   I   R      + + NHNKLL++     GIKTGYT  +G  I   ++  D  
Sbjct: 183 REIVREKEITIARVDPEGQKYMVNHNKLLSRYEGAIGIKTGYTVAAGQCIAAEVKRDDRE 242

Query: 263 IVAVVM 268
           ++AVV+
Sbjct: 243 LIAVVL 248


>gi|168187889|ref|ZP_02622524.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum C str.
           Eklund]
 gi|169294277|gb|EDS76410.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum C str.
           Eklund]
          Length = 410

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 116/226 (51%), Gaps = 21/226 (9%)

Query: 57  IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +++D N  Q+   K  + +YP AS TK+MT  +  E     K  L+  + + K A   + 
Sbjct: 37  VLMDKNTGQILYSKNLDTQYPPASTTKIMTALLAIE-----KCKLDDVVTIGKNATNVDG 91

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           SK+Y+ E    T    + AL+ +SAND + A  E ISGS ++F  LM+ +AK++G +NT 
Sbjct: 92  SKIYIFEGEKLTVRDLLYALLLQSANDCAVALSEHISGSTQEFVKLMNTRAKELGCKNTN 151

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--------RIITNH 227
           + N  GL+D    T+ARD A++   L K+  + +K  +  +    N        R I N 
Sbjct: 152 FVNPHGLYDDKHRTSARDLALILRELSKH--EDFKKIATTQIYTINPTNKEPNKRYIWNK 209

Query: 228 NKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +KL+ K         +G KTGYT  S  + V +    +  ++A+++
Sbjct: 210 DKLVQKKSKCYYEGCEGGKTGYTIQSKHSFVATATRDNKGLIAILL 255


>gi|229103155|ref|ZP_04233841.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
 gi|228680260|gb|EEL34451.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
          Length = 338

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 133/254 (52%), Gaps = 27/254 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT--AA 111
           S+I+ID N  ++   K +E P   A+L+K+MT YI+ E L + K+ L+  + +S     A
Sbjct: 37  SAILIDANSGEVIYKKNEETPIQSATLSKLMTEYIVLEQLNNGKIQLDESVKISNELFQA 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
              P ++  K+KT  T    + AL+    N  + A  E I G+E  F  LM+ KAK++ +
Sbjct: 97  ETTPMQVTAKDKT--TVRDLLHALLLTGNNRSALALAEHIGGNEDNFTTLMNEKAKQLQL 154

Query: 172 -QNTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIIT 225
            Q + + N++G +   +K   TTA+D A L   L K+FP       +   +F ++N  + 
Sbjct: 155 SQPSPFLNSTGANQDTNKQSNTTAKDAAKLATHLVKDFPNVLNMTKLTSYQFTFKNFQVF 214

Query: 226 NHNKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           N NK+   LN   K+  +DG++T ++ N   + V + +  D  +++V++      E D++
Sbjct: 215 NTNKMIYSLNENIKLQGVDGLQTSFSTNGNNSFVGTAKLGDTRLISVIL------ESDEE 268

Query: 280 ALELITSFLEKKTL 293
                T+F+E K L
Sbjct: 269 N----TTFIETKKL 278


>gi|255101277|ref|ZP_05330254.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-63q42]
          Length = 394

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 146/283 (51%), Gaps = 34/283 (12%)

Query: 33  KILFLSIIMISMA-----SELHAKPKYS--SIVIDVNKNQMTGFKQDEPRYP-ASLTKMM 84
           KI+ L++I++ +      ++  +  KYS  SI+ID    ++   K+ + + P ASL+KMM
Sbjct: 7   KIISLAMILVFIIPNYSYADDKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASLSKMM 66

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T  +  E +++K++    ++ + K+ A+   S   LK+       + +  L+  S ND +
Sbjct: 67  TFLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSGNDAA 126

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--HD--------KNQITTARDQ 194
            A  + I  +++ F   M+ KAK+IGM NT + N +GL  +D        K  I+TA+D 
Sbjct: 127 IAIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENISTAKDI 186

Query: 195 AILGILLRKNFPQYYKYFS----IRKFRYRNRII--TNHNKLLNKMHNIDGIKTGYTRNS 248
           AILG  +   F  Y K  +    +  +   +R    +N N LL  +  +DGIKTGYT N+
Sbjct: 187 AILGKYM---FDHYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGNA 243

Query: 249 G----FNIVTSLRYKDDP---IVAVVMGMPTSQERDQKALELI 284
           G    F++V +   K++    ++ VV+G     +R   +L L+
Sbjct: 244 GYCLSFSMVVNKNDKNEKKRRVIGVVLGTNHKNKRTSASLALL 286


>gi|125975657|ref|YP_001039567.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           ATCC 27405]
 gi|125715882|gb|ABN54374.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           ATCC 27405]
          Length = 418

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 120/226 (53%), Gaps = 9/226 (3%)

Query: 55  SSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           ++IVID +  ++  +++D    R  AS TK+MT  +  E       +L+ ++ VS  AA+
Sbjct: 63  AAIVIDADTGRVL-YEKDAYSRRAIASTTKIMTAIVAIE-----NGNLDDKVKVSSRAAS 116

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S + LK     T ++ +  ++ RS ND + A  E + G+ + F  +M++KA+++G++
Sbjct: 117 IWGSTIKLKPGEELTLKELLYGMMLRSGNDAALAVAEHVGGTVENFVKMMNDKARELGLK 176

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           NT +K   GL  +   +TA + A+L     +N P + +  + +     NR +   N++L+
Sbjct: 177 NTAFKTPHGLDVEGHYSTAYELAMLTRYALQN-PVFAQIVATKSTTITNRSLYTTNEMLS 235

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                DG+KTGYT  +G  +VTS       I++VV+   +  +R +
Sbjct: 236 LYPGADGVKTGYTGKAGRCLVTSATRDGFKIISVVLNCSSRSKRAE 281


>gi|126699758|ref|YP_001088655.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile 630]
 gi|115251195|emb|CAJ69026.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile]
          Length = 397

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 146/283 (51%), Gaps = 34/283 (12%)

Query: 33  KILFLSIIMISMA-----SELHAKPKYS--SIVIDVNKNQMTGFKQDEPRYP-ASLTKMM 84
           KI+ L++I++ +      ++  +  KYS  SI+ID    ++   K+ + + P ASL+KMM
Sbjct: 10  KIISLAMILVFIIPNYSYADDKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASLSKMM 69

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T  +  E +++K++    ++ + K+ A+   S   LK+       + +  L+  S ND +
Sbjct: 70  TFLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSGNDAA 129

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--HD--------KNQITTARDQ 194
            A  + I  +++ F   M+ KAK+IGM NT + N +GL  +D        K  I+TA+D 
Sbjct: 130 IAIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENISTAKDI 189

Query: 195 AILGILLRKNFPQYYKYFS----IRKFRYRNRII--TNHNKLLNKMHNIDGIKTGYTRNS 248
           AILG  +   F  Y K  +    +  +   +R    +N N LL  +  +DGIKTGYT N+
Sbjct: 190 AILGKYM---FDHYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGNA 246

Query: 249 G----FNIVTSLRYKDDP---IVAVVMGMPTSQERDQKALELI 284
           G    F++V +   K++    ++ VV+G     +R   +L L+
Sbjct: 247 GYCLSFSMVVNKNDKNEKKRRVIGVVLGTNHKNKRTSASLALL 289


>gi|225027210|ref|ZP_03716402.1| hypothetical protein EUBHAL_01466 [Eubacterium hallii DSM 3353]
 gi|224955470|gb|EEG36679.1| hypothetical protein EUBHAL_01466 [Eubacterium hallii DSM 3353]
          Length = 405

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 120/230 (52%), Gaps = 14/230 (6%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           S LHAK   ++I++D +  ++   K++E   P AS TK+MT     E+      +L+ ++
Sbjct: 55  SSLHAK---AAILMDGDNQRVLFGKEEEKELPMASTTKIMTCLYAIEHG-----NLSDKV 106

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
             S+ AA+    +L  +  + F     + AL+  S NDV+ A  E I GS ++F   M+ 
Sbjct: 107 TFSRRAASAPKVRLGARSGSQFLLSDLLYALMLESYNDVAVAIAEHIGGSVEQFCEDMTQ 166

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK--NFPQYYK--YFSIRKFRY- 219
           +A+  G  +T ++  +GL      TT  D A+L  L  K  NF +  K   FSI++ +  
Sbjct: 167 EARDYGCYHTSFETPNGLDSAKHYTTCHDLALLTCLALKNENFCKIIKEQSFSIKELKNG 226

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           ++  + N N  L   +   G+KTGYT N+G+  V +++     +++VV+G
Sbjct: 227 QSYSLNNKNLFLTSYNGAIGVKTGYTNNAGYCFVGAVKKDGHYLISVVLG 276


>gi|253582538|ref|ZP_04859760.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium varium ATCC
           27725]
 gi|251835683|gb|EES64222.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium varium ATCC
           27725]
          Length = 378

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 125/247 (50%), Gaps = 10/247 (4%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P Y +I++  +K ++   +  + +YP ASLTKMMTL + F+ L+   + +  +I VSK +
Sbjct: 35  PSYKAILLGDDKGKIYYSENIDEKYPLASLTKMMTLMVTFDQLEKGSIKMKDKIKVSKKS 94

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKI 169
           A    S++ +KE   FT E  I A    SAN+ + A  E+I  G   KF  +M+ K+  +
Sbjct: 95  AQTGGSRIPMKEGEVFTLEDLIKATAIYSANNAAYAIAEYIGKGDVDKFVKMMNKKSIDL 154

Query: 170 GMQNTI-YKNASGLHD---KNQITTARDQAILGILLR-KNFPQYYKYFSIRKFRYRNR-- 222
           G++  + +   +GL     K  + +   + I  + L    + QY    S+++    +   
Sbjct: 155 GLEKELEFYTPAGLPSDMTKKGMDSGTTRGIYKLSLEAAKYSQYMDIASMKEATIHDGKL 214

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            I N N LL +   I GIKTG+    G+NI      +   I  VV+G PT ++RD+  L+
Sbjct: 215 KIKNRNLLLGE-EGIYGIKTGHHSKVGYNISVLSDKESMQIFTVVVGGPTYKKRDESVLK 273

Query: 283 LITSFLE 289
            +  F E
Sbjct: 274 KMEEFYE 280


>gi|255020045|ref|ZP_05292118.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC
           51756]
 gi|254970574|gb|EET28063.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC
           51756]
          Length = 381

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT Y+ +E L   +L  + +IPVS  A     S ++++     T +Q +  LI
Sbjct: 62  PASLTKLMTAYLSYEALADGRLRWHERIPVSTVAWHTGGSSMFIQPNLPVTVDQLMHGLI 121

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A  + ++GS   F   M+  A ++G+    Y +  GL       +A + A 
Sbjct: 122 IDSGNDAAVALAQAVAGSRAAFVDEMNATAAQLGLTGAHYTDVDGLPHPGLHLSAMNIAE 181

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   L   +PQ  +   I+ +RY +    + N  L    ++DG+KTG+T+ +G  + T++
Sbjct: 182 LSRDLIARYPQVLQISRIQYYRYNHITQRSWNPALFGHPHVDGLKTGHTQAAGHCMDTTI 241

Query: 257 RYKDDPIVAVVMG 269
                 ++AVVMG
Sbjct: 242 DRHGRRLIAVVMG 254


>gi|218512347|ref|ZP_03509187.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli 8C-3]
          Length = 221

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 80/149 (53%)

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           I  +  + AND      E ++GSE++FA  M+ +A+++GM+  ++ N++GL D     TA
Sbjct: 2   IKGVAIQGANDSCIILAEGMAGSEQQFAQSMTRRARELGMEKAVFGNSTGLPDGKSKVTA 61

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           R+   L   L++++P  Y YF+   F +      N N LL      DG+ TG+    G++
Sbjct: 62  REMVTLATTLQQSYPNLYPYFAQLDFEWNKIFQRNRNPLLGLDLGADGLATGFADGEGYS 121

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           IV S++     +   + G+ + +ER ++A
Sbjct: 122 IVASVQRDGRRLFLALAGIASDKERTEEA 150


>gi|256003606|ref|ZP_05428595.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           DSM 2360]
 gi|255992397|gb|EEU02490.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           DSM 2360]
 gi|316939774|gb|ADU73808.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           DSM 1313]
          Length = 396

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 120/226 (53%), Gaps = 9/226 (3%)

Query: 55  SSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           ++IVID +  ++  +++D    R  AS TK+MT  +  E       +L+ ++ VS  AA+
Sbjct: 41  AAIVIDADTGRVL-YEKDAYSRRAIASTTKIMTAIVAIE-----NGNLDDKVKVSSRAAS 94

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S + LK     T ++ +  ++ RS ND + A  E + G+ + F  +M++KA+++G++
Sbjct: 95  IWGSTIKLKPGEELTLKELLYGMMLRSGNDAALAVAEHVGGTVENFVKMMNDKARELGLK 154

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           NT +K   GL  +   +TA + A+L     +N P + +  + +     NR +   N++L+
Sbjct: 155 NTAFKTPHGLDVEGHYSTAYELAMLTRYALQN-PVFAQIVATKSTTITNRSLYTTNEMLS 213

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                DG+KTGYT  +G  +VTS       I++VV+   +  +R +
Sbjct: 214 LYPGADGVKTGYTGKAGRCLVTSATRDGFKIISVVLNCSSRSKRAE 259


>gi|229074990|ref|ZP_04207992.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18]
 gi|228708047|gb|EEL60218.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18]
          Length = 338

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 133/254 (52%), Gaps = 27/254 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S+I+ID N  ++   K +E P   A+L+K+MT YI+ E L   ++ L+  + +S     A
Sbjct: 37  SAILIDANSGEVIYKKNEETPIQSATLSKLMTEYIVLEQLNDGQIQLDESVKISNELFQA 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
              P ++  K+KT  T    + AL+    N  + A  E I G+E  F +LM+ KAK++ +
Sbjct: 97  ETTPMQVTAKDKT--TVRDLLHALLLTGNNRSALALAEHIGGNEDNFTMLMNEKAKQLQL 154

Query: 172 -QNTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIIT 225
            Q + + N++G +   +K   TTA+D A L   L K+FP        +  +F ++N  + 
Sbjct: 155 SQPSPFLNSTGANQDTNKQSNTTAKDAAKLATHLVKDFPNVLNMTKLTSYQFTFKNFQVF 214

Query: 226 NHNKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           N NK+   LN   K+  +DG++T ++ N   + V + +  D  +++V++      E D++
Sbjct: 215 NTNKMIYSLNENIKLQGVDGLQTSFSTNGNNSFVGTAKLGDTRLISVIL------ESDEE 268

Query: 280 ALELITSFLEKKTL 293
                T+F+E K L
Sbjct: 269 N----TTFIETKKL 278


>gi|229190640|ref|ZP_04317636.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
 gi|228592773|gb|EEK50596.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
          Length = 338

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 132/252 (52%), Gaps = 23/252 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+I+ N  ++   K +E P   A+L+K+MT YI+ E L  +K+ L+  + +S      
Sbjct: 37  SAILINANSGEIVYKKNEETPVQSAALSKLMTEYIVLEQLNDRKIQLDDLVQISNEVFRV 96

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG-MQ 172
             S + +      T    + AL+    N  + A  E I+G+E  F ILM+ KAK++  +Q
Sbjct: 97  ETSPIQVTSNDKTTVRDLLHALLLAGNNRSALALAEHIAGNEDNFTILMNKKAKELKLLQ 156

Query: 173 NTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIITNH 227
            + + N++G++   +K   TTA D A L   L K+FP        +  +F +++  + N 
Sbjct: 157 PSPFLNSTGINNNTNKQSTTTAIDAAKLAARLVKDFPDVLNITKLTSYQFTFKDSQVFNT 216

Query: 228 NKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           NK+   LN   K+  +DG++T ++ N  ++ V++ +  D  +++V++      + D++ +
Sbjct: 217 NKMIYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLGDTRLISVIL------DADEENI 270

Query: 282 ELITSFLEKKTL 293
               SF+E K L
Sbjct: 271 ----SFIETKKL 278


>gi|30020624|ref|NP_832255.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
 gi|229044252|ref|ZP_04191925.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
 gi|229109961|ref|ZP_04239541.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
 gi|229127903|ref|ZP_04256888.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
 gi|29896176|gb|AAP09456.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
 gi|228655547|gb|EEL11400.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
 gi|228673482|gb|EEL28746.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
 gi|228725077|gb|EEL76361.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
          Length = 338

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 132/252 (52%), Gaps = 23/252 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+I+ N  ++   K +E P   A+L+K+MT YI+ E L  KK+ L+  + +S      
Sbjct: 37  SAILINANSGEIVYKKNEETPVQSAALSKLMTEYIVLEQLNDKKIQLDDFVQISNEVFRV 96

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG-MQ 172
             S + +      T    + AL+    N  + A  E I+G+E  F +LM+ KAK++  +Q
Sbjct: 97  ETSPIQVTSNDKTTVRDLLHALLLAGNNRSALALAEHIAGNEDNFTVLMNKKAKELKLLQ 156

Query: 173 NTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIITNH 227
            + + N++G++   +K   TTA D A L   L K+FP        +  +F +++  + N 
Sbjct: 157 PSPFLNSTGINNNTNKQSTTTAIDAAKLAARLVKDFPDVLNITKLTSYQFTFKDSQVFNT 216

Query: 228 NKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           NK+   LN   K+  +DG++T ++ N  ++ V++ +  D  +++V++      + D++ +
Sbjct: 217 NKMIYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLGDTRLISVIL------DADEENI 270

Query: 282 ELITSFLEKKTL 293
               SF+E K L
Sbjct: 271 ----SFIETKKL 278


>gi|317122120|ref|YP_004102123.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           marianensis DSM 12885]
 gi|315592100|gb|ADU51396.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           marianensis DSM 12885]
          Length = 578

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 115/235 (48%), Gaps = 14/235 (5%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++I++D    Q+   +  +   P AS TK+MT  +  E     +  L   I  S+ A   
Sbjct: 186 AAILVDAATGQVLYERNADATMPMASTTKIMTALLAIE-----RGDLRQVITTSERAFGV 240

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S LYL      T E+ +  L+ +S ND + A  E ++GS + F   M+ +A+++G+++
Sbjct: 241 EGSSLYLALGEQRTLEELLYGLMLQSGNDAAVAIAEGLAGSVETFVDWMNRRAQELGLEH 300

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY------RNRIITNH 227
           T + +  GL  ++  T+ARD A L  +   N P + +    R++R         R++ NH
Sbjct: 301 TRFADPHGLASRDHYTSARDLATLARVAMAN-PTFRRIVGTREYRMPWPEKQSERVLYNH 359

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM-PTSQERDQKAL 281
           N+ L +     G+K GYT  +   +V S +     ++ V++G  PT   RD  AL
Sbjct: 360 NRFLWRYEGATGVKNGYTSAARGALVASAQRDGVELIGVLLGAHPTGMYRDMAAL 414


>gi|328947304|ref|YP_004364641.1| serine-type D-Ala-D-Ala carboxypeptidase [Treponema succinifaciens
           DSM 2489]
 gi|328447628|gb|AEB13344.1| Serine-type D-Ala-D-Ala carboxypeptidase [Treponema succinifaciens
           DSM 2489]
          Length = 479

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 118/245 (48%), Gaps = 34/245 (13%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+IV+D     +   K  + + P AS+TK++ +Y++FE +++ ++ L+  +P+   +  +
Sbjct: 101 SAIVVDFATGNILFEKNADVQIPPASMTKLVEMYVVFEAVENGEISLDDVVPLPPESWAR 160

Query: 114 N-PSK---LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           N PS    ++L E+   T  + +L L   S ND S A  +++ G+   F   M+   KK+
Sbjct: 161 NLPSDASIMFLDERQKVTLRELLLGLAIASGNDASIAVAKYVCGNMDSFVERMNQTVKKM 220

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF------RY---- 219
           G+  T +  +SG  +KN ITTA++ A       + FP     F+I +F      RY    
Sbjct: 221 GLVKTEFVESSGYSEKN-ITTAKEFAAFCRKYIERFP-----FAITEFHSQKVLRYPLAK 274

Query: 220 -------------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
                        +  I  N NKLL  +   DG+KTG+   SGFN+  +        ++V
Sbjct: 275 NLPRESAQKNGDSQAVIQYNTNKLLGSLDGCDGLKTGFIYESGFNLALTAERNGVRYISV 334

Query: 267 VMGMP 271
            M  P
Sbjct: 335 TMKGP 339


>gi|315650677|ref|ZP_07903733.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saburreum DSM
           3986]
 gi|315487054|gb|EFU77380.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saburreum DSM
           3986]
          Length = 466

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 126/259 (48%), Gaps = 28/259 (10%)

Query: 32  GKILFLSIIMISMASELHA-----KPKYSSIVIDVNKNQMTGF----KQDEPRYPASLTK 82
           G +L LSI +IS A E  A     KP  S+    V       F      D+  YPAS+TK
Sbjct: 10  GLVLVLSISVISFAPEYMAVYADTKPDISAQGAAVYNADTGEFLYEKNGDKQFYPASITK 69

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRS 139
           +MT  +  E     + +L+  I  S++A T      + L +      +    +  ++  S
Sbjct: 70  IMTGLLTVE-----QANLDDTITFSRSATTNLESGSTSLGVVAGDTMSVRDALYGMMLAS 124

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AN+VS    E + GS   FA +M+N+AK++G  +T + N +GL+++N +TTA+D A++  
Sbjct: 125 ANEVSNGLAEHVGGSVAGFANMMNNRAKELGATHTNFVNPNGLNNQNHVTTAKDMALIAA 184

Query: 200 LLRKNFPQYYKY-------FSIRKFRYRNRIITNHNKLLN---KMHNIDGIKTGYTRNSG 249
              +N P +          F   K +   ++I  H+K++        + G KTGYT+++G
Sbjct: 185 AAFRN-PTFRAVAGASSYSFPATKSKPTPKLIKMHHKMVTGEISYAGVIGGKTGYTKSAG 243

Query: 250 FNIVTSLRYKDDPIVAVVM 268
             +VT+       ++ VV+
Sbjct: 244 NTLVTAAERNGVRLIVVVL 262


>gi|281416665|ref|ZP_06247685.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           JW20]
 gi|281408067|gb|EFB38325.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           JW20]
          Length = 396

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 119/226 (52%), Gaps = 9/226 (3%)

Query: 55  SSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           ++IVID +  ++  +++D    R  AS TK+MT  +  E       +L+ ++ VS  AA+
Sbjct: 41  AAIVIDADTGRVL-YEKDAYSRRAIASTTKIMTAIVAIE-----NGNLDDKVKVSSRAAS 94

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S + LK     T  + +  ++ RS ND + A  E + G+ + F  +M++KA+++G++
Sbjct: 95  IWGSTIKLKPGEELTLRELLYGMMLRSGNDAALAVAEHVGGTVENFVKMMNDKARELGLK 154

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           NT +K   GL  +   +TA + A+L     +N P + +  + +     NR +   N++L+
Sbjct: 155 NTAFKTPHGLDVEGHYSTAYELAMLTRYALQN-PVFAQIVATKSTTITNRSLYTTNEMLS 213

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                DG+KTGYT  +G  +VTS       I++VV+   +  +R +
Sbjct: 214 LYPGADGVKTGYTGKAGRCLVTSATRDGFKIISVVLNCSSRSKRAE 259


>gi|255656482|ref|ZP_05401891.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
           penicillin-binding protein) [Clostridium difficile
           QCD-23m63]
 gi|296450072|ref|ZP_06891834.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           difficile NAP08]
 gi|296878453|ref|ZP_06902459.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           difficile NAP07]
 gi|296261080|gb|EFH07913.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           difficile NAP08]
 gi|296430537|gb|EFH16378.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           difficile NAP07]
          Length = 429

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 103/201 (51%), Gaps = 26/201 (12%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPAS TK+ T  ++ + ++     LN  I + K     + S +YLKE   FT +Q + AL
Sbjct: 59  YPASTTKVWTACLVLKEVKD----LNQVIEI-KNLPQIDGSSMYLKEGESFTVKQLLNAL 113

Query: 136 ITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +  SAND +     ++ G + +KF  LM+++AKKIG  NT + N  GL D N  TTA D 
Sbjct: 114 LVHSANDAAFVLARYVGGGDVQKFIDLMNSEAKKIGATNTHFNNPHGLPDPNHYTTAHDM 173

Query: 195 AILGILLRKN--FPQYYKYFSI-----------RKFRYRNRIITNHNKLLNKMHNI---- 237
           A++      N  F Q  K  S+           R F   N+ +T+H+K+  K   I    
Sbjct: 174 ALIAREAMNNDTFRQIVKTKSLKFEATKAYPYERYFVNTNKFLTSHDKITYKGQPINIKY 233

Query: 238 ---DGIKTGYTRNSGFNIVTS 255
              DGIKTGYT  +G  +++S
Sbjct: 234 DIVDGIKTGYTDAAGKCLLSS 254


>gi|229150753|ref|ZP_04278967.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
 gi|228632840|gb|EEK89455.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
          Length = 338

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 133/252 (52%), Gaps = 23/252 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+I+ N  ++   K +E P   A+L+K+MT YI+ E L ++K+ L+  + +S      
Sbjct: 37  SAILINANSGEIVYKKNEETPVQSAALSKLMTEYIVLEQLNNRKIQLDDLVQISNEVFRV 96

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG-MQ 172
             S + +      T    + AL+    N  + A  E I+G+E  F +LM+ KAK++  +Q
Sbjct: 97  ETSPIQVTSNDKTTVRDLLHALLLAGNNRSALALAEHIAGNEDNFTVLMNKKAKELKLLQ 156

Query: 173 NTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIITNH 227
            + + N++G++   +K   TTA D A L   L K+FP        +  +F +++  + N 
Sbjct: 157 PSPFLNSTGINNNTNKQSTTTAIDAAKLAARLVKDFPDVLNITKLTSYQFTFKDSQVFNT 216

Query: 228 NKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           NK+   LN   K+  +DG++T ++ N  ++ V++ +  D  +++V++      + D++ +
Sbjct: 217 NKMIYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLGDTRLISVIL------DADEENI 270

Query: 282 ELITSFLEKKTL 293
               SF+E K L
Sbjct: 271 ----SFIETKKL 278


>gi|86148565|ref|ZP_01066850.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. MED222]
 gi|85833631|gb|EAQ51804.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. MED222]
          Length = 200

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 76/134 (56%), Gaps = 3/134 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y++ + L+   ++LN  + +S+ A  +N    SK++++  T    E+   
Sbjct: 66  PASLTKMMTSYVVGQELERGNINLNDDVVISENAWAKNFPDSSKMFIEVGTTVKVEELNR 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  E I+GSE  F  LM+  A  IGM++T + N  GL + N  +T  D
Sbjct: 126 GIIIQSGNDACVAMAEHIAGSEDAFVDLMNAWASSIGMKDTHFANVHGLDNPNLYSTPYD 185

Query: 194 QAILGILLRKNFPQ 207
            A+LG  L ++ P 
Sbjct: 186 MALLGQALIRDVPD 199


>gi|228921242|ref|ZP_04084570.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838412|gb|EEM83725.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 338

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 132/252 (52%), Gaps = 23/252 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+I+ N  ++   K +E P   A+L+K+MT YI+ E L  +K+ L+  + +S      
Sbjct: 37  SAILINANSGEIVYKKNEETPVQSAALSKLMTEYIVLEQLNDRKIQLDDFVQISNEVFRV 96

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG-MQ 172
             S + +      T    + AL+    N  + A  E I+G+E  F ILM+ KAK++  +Q
Sbjct: 97  ETSPIQVTSNDKTTVRDLLHALLLAGNNRSALALAEHIAGNEDNFTILMNKKAKELKLLQ 156

Query: 173 NTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIITNH 227
            + + N++G++   +K   TTA D A L   L K+FP        +  +F +++  + N 
Sbjct: 157 PSPFLNSTGINNDTNKQSTTTAIDAAKLAARLVKDFPDVLNITKLTSYQFTFKDSQVFNT 216

Query: 228 NKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           NK+   LN   K+  +DG++T ++ N  ++ V++ +  D  +++V++      + D++ +
Sbjct: 217 NKMIYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLGDTRLISVIL------DADEENI 270

Query: 282 ELITSFLEKKTL 293
               SF+E K L
Sbjct: 271 ----SFIETKKL 278


>gi|218232010|ref|YP_002367234.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           B4264]
 gi|229145140|ref|ZP_04273532.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
 gi|218159967|gb|ACK59959.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus B4264]
 gi|228638338|gb|EEK94776.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
          Length = 338

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 132/252 (52%), Gaps = 23/252 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+I+ N  ++   K +E P   A+L+K+MT YI+ E L  +K+ L+  + +S      
Sbjct: 37  SAILINANSGEIVYKKNEETPVQSAALSKLMTEYIVLEQLNDRKIQLDDLVQISNEVFRV 96

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG-MQ 172
             S + +      T    + AL+    N  + A  E I+G+E  F +LM+ KAK++  +Q
Sbjct: 97  ETSPIQVTSNDKTTVRDLLHALLLAGNNRSALALAEHIAGNEDNFTVLMNKKAKELKLLQ 156

Query: 173 NTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIITNH 227
            + + N++G++   +K   TTA D A L   L K+FP        +  +F +++  + N 
Sbjct: 157 PSPFLNSTGINNNTNKQSTTTAIDAAKLAARLVKDFPDVLNITKLTSYQFTFKDSQVFNT 216

Query: 228 NKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           NK+   LN   K+  +DG++T ++ N  ++ V++ +  D  +++V++      + D++ +
Sbjct: 217 NKMIYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLGDTRLISVIL------DADEENI 270

Query: 282 ELITSFLEKKTL 293
               SF+E K L
Sbjct: 271 ----SFIETKKL 278


>gi|296503088|ref|YP_003664788.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
 gi|296324140|gb|ADH07068.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
          Length = 338

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 132/252 (52%), Gaps = 23/252 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+I+ N  ++   K +E P   A+L+K+MT YI+ E L  +K+ L+  + +S      
Sbjct: 37  SAILINANSGEIVYKKNEETPVQSAALSKLMTEYIVLEQLNDRKIQLDDLVQISNEVFRV 96

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG-MQ 172
             S + +      T    + AL+    N  + A  E I+G+E  F +LM+ KAK++  +Q
Sbjct: 97  ETSPIQVTSNDKTTVRDLLHALLLAGNNRSALALAEHIAGNEDNFTVLMNKKAKELQLLQ 156

Query: 173 NTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIITNH 227
            + + N++G++   +K   TTA D A L   L K+FP        +  +F +++  + N 
Sbjct: 157 PSPFLNSTGINNNTNKQSTTTAIDAAKLAARLVKDFPDVLNITKLTSYQFTFKDSQVFNT 216

Query: 228 NKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           NK+   LN   K+  +DG++T ++ N  ++ V++ +  D  +++V++      + D++ +
Sbjct: 217 NKMIYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLGDTRLISVIL------DADEENI 270

Query: 282 ELITSFLEKKTL 293
               SF+E K L
Sbjct: 271 ----SFIETKKL 278


>gi|312127658|ref|YP_003992532.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777677|gb|ADQ07163.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 374

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 120/253 (47%), Gaps = 20/253 (7%)

Query: 42  ISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKK 97
           I  A+E    P+ SS   I I+    ++   K  + + P AS TK+MT  ++ E      
Sbjct: 21  ICYANEKKNLPQVSSKSAIAIEWVTGKILFEKNKDLKLPMASTTKIMTAILVLE-----N 75

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
             +N +I +   A     S +YL++         +  L+  S ND + A     +G  K+
Sbjct: 76  CDVNKEIEIPLQAVGVPGSSMYLEKGEKLKIIDLLYGLMLSSGNDAAVALAIATAGDVKR 135

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKY---- 211
           F  LM+ KAK++G+ NT++ +  GL      TTA D A L     +N  F Q  K     
Sbjct: 136 FVKLMNKKAKELGLSNTVFSSPHGLEQGQHYTTAHDLAKLAAYAMRNPIFRQIVKTTERE 195

Query: 212 --FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
             ++ R +   NRI+ N NK+L      +G+KTG+T+ +G  +VTS+   D  ++ VV+ 
Sbjct: 196 VPWTTRPY---NRILKNKNKMLRLYPGAEGVKTGFTKKAGRCLVTSVCRDDFRVICVVLN 252

Query: 270 MPTSQERDQKALE 282
            P      QK L+
Sbjct: 253 APDMWNDTQKILD 265


>gi|229097094|ref|ZP_04228060.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
 gi|229116057|ref|ZP_04245450.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
 gi|228667392|gb|EEL22841.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
 gi|228686323|gb|EEL40235.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
          Length = 338

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 131/254 (51%), Gaps = 27/254 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT--AA 111
           S+I+ID N  ++   K +E P   A+L+K+MT YI+ E L   K+ L+  + +S     A
Sbjct: 37  SAILIDANSGEVIYKKNEETPIQSATLSKLMTEYIVLEQLNDGKIQLDESVKISNELFQA 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
              P ++  K+KT  T    + AL+    N  + A  E I G+E  F  LM+ KAK++ +
Sbjct: 97  ETTPMQVTAKDKT--TVRDLLHALLLTGNNRSALALAEHIGGNEDNFTTLMNEKAKQLQL 154

Query: 172 -QNTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIIT 225
            Q + + N++G +   +K   TTA+D A L   L K+FP        +  +F ++N  + 
Sbjct: 155 SQPSPFLNSTGANQDTNKQSNTTAKDAAKLATHLVKDFPNVLNMTKLTSYQFTFKNFQVF 214

Query: 226 NHNKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           N NK+   LN   K   +DG++T ++ N   + V + +  D  +++V++      E D++
Sbjct: 215 NTNKMIYSLNENIKFQGVDGLQTSFSTNGNNSFVGTAKLGDTRLISVIL------ESDEE 268

Query: 280 ALELITSFLEKKTL 293
                T+F+E K L
Sbjct: 269 N----TTFIETKKL 278


>gi|228901108|ref|ZP_04065313.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           4222]
 gi|228858534|gb|EEN02989.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           4222]
          Length = 338

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 133/252 (52%), Gaps = 23/252 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+I+ N  ++   K +E P   A+L+K+MT YI+ E L  +K+ L+  + +S      
Sbjct: 37  SAILINANSGEIVYKKNEETPVQSAALSKLMTEYIVLEQLNDRKIQLDDFVQISNEVFRV 96

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG-MQ 172
             S + +      T    + AL+    N  + A  E I+G+E  F +LM+ KAK++  +Q
Sbjct: 97  ETSPIQVTSNDKTTVRDLLHALLLAGNNRSALALAEHIAGNEDNFTVLMNKKAKELKLLQ 156

Query: 173 NTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIITNH 227
            + + N++G++   +K   TTA D A L   L K+FP        +  +F +++  + N 
Sbjct: 157 PSPFLNSTGINNDTNKQSTTTAIDVAKLAARLIKDFPDVLNITKLTSYQFSFKDSQVFNT 216

Query: 228 NKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           NK+   LN   K+  +DG++T ++ N  ++ V++ + +D  +++V++      + D++ +
Sbjct: 217 NKMIYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLEDTRLISVIL------DADEENI 270

Query: 282 ELITSFLEKKTL 293
               SF+E K L
Sbjct: 271 ----SFIETKKL 278


>gi|169823800|ref|YP_001691411.1| D-alanyl-D-alanine carboxypeptidase [Finegoldia magna ATCC 29328]
 gi|167830605|dbj|BAG07521.1| D-alanyl-D-alanine carboxypeptidase [Finegoldia magna ATCC 29328]
          Length = 394

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 112/221 (50%), Gaps = 8/221 (3%)

Query: 65  QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKT 124
           ++  + +++P   ASLTK+MT  ++ E + + K  L+ +I +    A    S + LK+  
Sbjct: 48  ELLNYNENKPLAIASLTKIMTYVLVMEDINANKYKLDDKIKIQTQYAKPEASTMQLKKGE 107

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL-- 182
             T    I  ++  S ND +        GS  KF   M+ KA ++ +++  + +ASG   
Sbjct: 108 ELTVNDLIRGMMIVSGNDAADELAVKSEGSVGKFVERMNKKAAELELESAKFYSASGYPE 167

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL--LNKMHNIDGI 240
           +DK  + +A+D A L      N+PQ   Y   +K    +R       +  L K+  +DG 
Sbjct: 168 NDKENLMSAKDLAKLTTYTINNYPQVLNYTKTQKLVMPSRKYEAATTIPFLGKIEGVDGF 227

Query: 241 KTGYTRNSGFNIVTSLRYK-DDP---IVAVVMGMPTSQERD 277
           KTG T  +G+ ++T++  K ++P   +V+V+MG PT  +R+
Sbjct: 228 KTGTTEKAGYCLITTMSLKPNNPKNKVVSVLMGAPTKYDRN 268


>gi|118443151|ref|YP_878109.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT]
 gi|118133607|gb|ABK60651.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT]
          Length = 375

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 143/276 (51%), Gaps = 24/276 (8%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDV-------NKNQMTGFKQD- 72
           +I I  NI L+  I F+  I    A+E    PK +SI +D        +K++   ++++ 
Sbjct: 6   TISIILNICLIFNIAFVPSIE---ATE----PKNNSIYVDARCAIAMDSKSKCVLYEKNA 58

Query: 73  EPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           E   P AS TK+MT  +  +Y      +L+T+  VS  AA+   SK+  K+    + ++ 
Sbjct: 59  EMLVPIASTTKIMTTLVALKYG-----NLDTKYEVSPKAASIRGSKVGYKKGEQISLKEL 113

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  L+ RS ND +    E ISGS +KF  LM+  A +IG  N+ +++  GL  +N  +TA
Sbjct: 114 LYGLMLRSGNDAAITIAEGISGSVEKFCELMNEYAIEIGAFNSHFESPHGLDSQNHYSTA 173

Query: 192 RDQAILGILLRKN--FPQYYKYFSIRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNS 248
            D A +    ++N  F +      I + ++   R   N NK+L ++ N +G+KTGYT  +
Sbjct: 174 YDLARITAKAKENKLFNEIVGVKDIDEKQHGFTRSYHNINKILYQIPNANGVKTGYTGGA 233

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           G  +VTS++  DD ++ VV+      +  +K  + +
Sbjct: 234 GKCLVTSVKEDDDDVIIVVLNCTPRWKETKKIYDFV 269


>gi|163940330|ref|YP_001645214.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
 gi|163862527|gb|ABY43586.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
          Length = 338

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 124/229 (54%), Gaps = 17/229 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S+I+ID N  ++   K +E P   A+L+K+MT YI  E L   K+ L+  + +S     A
Sbjct: 37  SAILIDTNSGEIVYKKNEETPIQSATLSKLMTEYIALEQLNEGKIQLDELVKISNEVFRA 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             +P ++  K+KT  T    + AL     N  + A  E I+G+E  F +LM++KAK++ +
Sbjct: 97  ETSPIQVTSKDKT--TVRDLLHALFLTGNNRSALALAEHIAGNEDNFTLLMNDKAKQLKL 154

Query: 172 -QNTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIIT 225
            Q + + NA+G++   +K   TT+ D A L   L K+FP        +  +F +++  + 
Sbjct: 155 SQPSPFLNATGINNDTNKQSTTTSIDAAKLATQLVKDFPDVLNVTKLTSYQFTFKDSKVF 214

Query: 226 NHNKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N NK+   LN   K+  +DG++T ++ N  ++ V++    D  +++V++
Sbjct: 215 NTNKMIYSLNKNIKLQGVDGLQTSFSTNGNYSFVSTATRGDTRLISVIL 263


>gi|303235381|ref|ZP_07321998.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
           BVS033A4]
 gi|302493502|gb|EFL53291.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
           BVS033A4]
          Length = 394

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 112/221 (50%), Gaps = 8/221 (3%)

Query: 65  QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKT 124
           ++  + +++P   ASLTK+MT  ++ E + + K  L+ +I +    A    S + LK+  
Sbjct: 48  ELLNYNENKPLAIASLTKIMTYVLVMEDINANKYKLDDKIKIQTQYAKPEASTMQLKKGE 107

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL-- 182
             T    I  ++  S ND +        GS  KF   M+ KA ++ +++  + +ASG   
Sbjct: 108 ELTVNDLIRGMMIVSGNDAADELAVKSEGSVGKFVERMNKKAAELELESAKFYSASGYPE 167

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL--LNKMHNIDGI 240
           +DK  + +A+D A L      N+PQ   Y   +K    +R       +  L K+  +DG 
Sbjct: 168 NDKENLMSAKDLAKLTTYTINNYPQVLNYTKTQKLVMPSRKYEAATTVPFLGKIEGVDGF 227

Query: 241 KTGYTRNSGFNIVTSLRYK-DDP---IVAVVMGMPTSQERD 277
           KTG T  +G+ ++T++  K ++P   +V+V+MG PT  +R+
Sbjct: 228 KTGTTEKAGYCLITTMSLKPNNPKNKVVSVLMGAPTKYDRN 268


>gi|169832020|ref|YP_001718002.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638864|gb|ACA60370.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 400

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 115/223 (51%), Gaps = 15/223 (6%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++++D++  +    K  D   YPAS TK++T  +    +++    ++ ++ +S+ A   
Sbjct: 34  AAVLMDLDTGRFLYEKNADRVMYPASTTKILTALVA---VRNGYDRMDDRVTMSENAVYA 90

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S ++      F+ E+ + + +  SAND +TA  E + GS ++F+  M+ +A+++G  N
Sbjct: 91  GGSAIWSAPGEEFSLEELLWSALLGSANDAATAVAEHLCGSVEEFSAAMNAEARRLGAWN 150

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRK--NFPQYYKYFSIRKFRYRN------RIIT 225
           T + N  GLHD+   TTARD   L ++ R   N P   +    + ++          ++ 
Sbjct: 151 THFVNPHGLHDERHYTTARD---LALIARAALNEPLIREMAGTKTYQLSRADPDALSLLV 207

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N NKLL +     G+KTGYT  +G  +V +       ++AVV+
Sbjct: 208 NTNKLLWRYEGAIGLKTGYTSQAGQCLVAAAERNGRTVLAVVL 250


>gi|160931610|ref|ZP_02079005.1| hypothetical protein CLOLEP_00442 [Clostridium leptum DSM 753]
 gi|156869481|gb|EDO62853.1| hypothetical protein CLOLEP_00442 [Clostridium leptum DSM 753]
          Length = 381

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 108/223 (48%), Gaps = 21/223 (9%)

Query: 70  KQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           K  E + P AS TK+MT  +  E  Q++    + Q+ ++        S + LK     T 
Sbjct: 56  KAAEEKLPMASTTKIMTALLTLEAAQAE----DRQVKITDEMVRVEGSSMGLKPGNVVTL 111

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
                 ++  S ND + A    I+GS ++FA LM+ +AK+IGM+NT +   SGL D+N  
Sbjct: 112 TALAQGMLLCSGNDAANAAAIAIAGSTEEFAKLMNQRAKQIGMKNTNFVTPSGLDDENHY 171

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRK----------FRYRNRIITNHNKLLNKMHNID 238
           TTA D A+LG    +N  Q ++  + +K           +Y      NHN+LL       
Sbjct: 172 TTAYDMALLGACAMEN--QRFREIASQKSMQVQFVEPDMKY---TFGNHNRLLTAYEGCI 226

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           G+KTG+T+ SG  +V+        +VAV +  P     D KA+
Sbjct: 227 GVKTGFTKKSGRCLVSCAERDGVRLVAVTLNAPDDW-NDHKAM 268


>gi|321472931|gb|EFX83900.1| hypothetical protein DAPPUDRAFT_315307 [Daphnia pulex]
          Length = 285

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 86/153 (56%), Gaps = 4/153 (2%)

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND      E ++GSE+ F   M+ KAK++G  NT + N++G  ++   +T RD
Sbjct: 17  GIIVQSGNDACIVVTEGLAGSEENFVSQMNQKAKELGAINTHFLNSTGWPERGHTSTPRD 76

Query: 194 QAILGILLRKNFPQYYK-YFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFN 251
             + GI   ++FP++YK Y+S  +F Y      N N LL NK+   DG+KTG+T   GF 
Sbjct: 77  LMLFGIRTIRDFPEFYKIYYSQLEFTYNGIRQNNRNPLLYNKLG--DGLKTGHTDEGGFG 134

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +  S +  D  ++ V+ G+   + R + A +++
Sbjct: 135 LAGSGQRGDRRLIFVINGLKNDKTRAETASKML 167


>gi|218897511|ref|YP_002445922.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           G9842]
 gi|218543059|gb|ACK95453.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           G9842]
          Length = 338

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 133/252 (52%), Gaps = 23/252 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+I+ N  ++   K +E P   A+L+K+MT YI+ E L  +K+ L+  + +S      
Sbjct: 37  SAILINANSGEIVYKKNEETPVQSAALSKLMTEYIVLEQLNDRKIQLDDFVQISNEVFRV 96

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG-MQ 172
             S + +      T    + AL+    N  + A  E I+G+E  F +LM+ KAK++  +Q
Sbjct: 97  ETSPIQVTSNDKTTVRDLLHALLLAGNNRSALALAEHIAGNEDNFTVLMNKKAKELKLLQ 156

Query: 173 NTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIITNH 227
            + + N++G++   +K   TTA D A L   L K+FP        +  +F +++  + N 
Sbjct: 157 PSPFLNSTGVNNDTNKQSTTTAIDVAKLAARLIKDFPDVLNITKLTSYQFSFKDSQVFNT 216

Query: 228 NKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           NK+   LN   K+  +DG++T ++ N  ++ V++ + +D  +++V++      + D++ +
Sbjct: 217 NKMIYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLEDTRLISVIL------DADEENI 270

Query: 282 ELITSFLEKKTL 293
               SF+E K L
Sbjct: 271 ----SFIETKKL 278


>gi|89896454|ref|YP_519941.1| hypothetical protein DSY3708 [Desulfitobacterium hafniense Y51]
 gi|89335902|dbj|BAE85497.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 428

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 115/234 (49%), Gaps = 19/234 (8%)

Query: 52  PKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS 107
           P+ SS   I+ID+   Q    K  D P  PAS TK+M+  I  E     K +LN  +   
Sbjct: 36  PEISSEGAILIDITTGQTLFAKNPDHPYEPASTTKIMSALIALE-----KGNLNDLVTAG 90

Query: 108 KTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
            +   Q     +++YL+     T E  + AL+  SAND + A  E I G  + F  LM+ 
Sbjct: 91  PSVLDQELTQGTRIYLEPGEQVTLENLLYALLLNSANDAAVAIAEHIGGDIQGFTDLMNA 150

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR-KFRYRNR- 222
           KAK+IG  NT +KN SGL     +TTARD A++     +N P +  Y   + K   RNR 
Sbjct: 151 KAKEIGALNTSFKNPSGLSADGHLTTARDLAMIARFAYQN-PVFRDYVKTKTKIIPRNRE 209

Query: 223 -IIT---NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            I T   N N+ +     + G+KTGYT ++G   V +       ++ VV+  P+
Sbjct: 210 NIPTEMYNINEFIWTEPTVTGMKTGYTSSAGNTYVATAERDGRALLGVVLKSPS 263


>gi|23098797|ref|NP_692263.1| D-alanyl-D-alanine carboxypeptidase [Oceanobacillus iheyensis
           HTE831]
 gi|22777024|dbj|BAC13298.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
           [Oceanobacillus iheyensis HTE831]
          Length = 393

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 128/247 (51%), Gaps = 20/247 (8%)

Query: 48  LHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMT-LYIIFEYLQSKKLHLNTQIP 105
           LH++   S+I+++    Q+   K  ++  YPAS+TK+ T +Y+I      +  +L+ ++ 
Sbjct: 31  LHSE---SAILMEAESGQILAEKNANQQMYPASVTKIATAIYVI------ENGNLSEEVE 81

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           +S+ A   + + ++L E    +  + +  L+  S ND   A  E ++GS ++F+  M+  
Sbjct: 82  ISEKATEADGTTVFLAEGEKVSLGKLVKGLLINSGNDAGVAIAEHMNGSVREFSKEMTEF 141

Query: 166 -AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI- 223
             +K G++NT + N  GL D N  TTA D A +     +N  ++ K F ++   + ++  
Sbjct: 142 FEEKAGIENTNFDNPHGLFDDNHYTTAEDLAKITKYAMQN-EKFVKLFGMKSVDWESKTW 200

Query: 224 ---ITNHNKLLNKMHNIDGI---KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
              I NH++++      DG+   K GY   SGF +VT+       ++AV +  P S++  
Sbjct: 201 ETTILNHHRMVKGEIPYDGVTGGKNGYVSRSGFTLVTTAEQDGMNLIAVTLKTPLSEQSY 260

Query: 278 QKALELI 284
           +  +EL+
Sbjct: 261 EDTVELL 267


>gi|264676435|ref|YP_003276341.1| peptidase S11, D-alanyl-D-alanine [Comamonas testosteroni CNB-2]
 gi|262206947|gb|ACY31045.1| peptidase S11, D-alanyl-D-alanine [Comamonas testosteroni CNB-2]
          Length = 165

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 75/123 (60%), Gaps = 1/123 (0%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +++DV   Q+ G K  D P   ASLTK+M+ Y++F+ L+SKK+ L  ++PVS+ A     
Sbjct: 40  LLVDVTAGQVLGAKDVDAPVEQASLTKLMSAYVVFDALRSKKITLEQRMPVSERAWKMPG 99

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S++++  K        +  +I +S ND + A  E + G+ + F  +M+++AK +GM+NT 
Sbjct: 100 SRMFIDPKMQVPVNDLLSGMIIQSGNDATMALAEAVGGTAENFVKMMNDQAKALGMKNTS 159

Query: 176 YKN 178
           YKN
Sbjct: 160 YKN 162


>gi|297587950|ref|ZP_06946594.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
           ATCC 53516]
 gi|297574639|gb|EFH93359.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
           ATCC 53516]
          Length = 394

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 111/221 (50%), Gaps = 8/221 (3%)

Query: 65  QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKT 124
           ++  + +++P   ASLTK+MT  ++ E + + K  L+ +I +    A    S + LK+  
Sbjct: 48  ELLNYNENKPYAIASLTKIMTYVLVMEDINANKYKLDDKIKIQTQYAKPEASTMQLKKGE 107

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL-- 182
             T    I  ++  S ND +        GS  KF   M+ KA ++ +++  + +ASG   
Sbjct: 108 EVTVNDLIRGMMIVSGNDAADELAVKSEGSVAKFVERMNKKAAELELESAKFYSASGYPE 167

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL--LNKMHNIDGI 240
           +DK  + +A+D A L      N+PQ   Y   +K    +R       +  L K+  +DG 
Sbjct: 168 NDKENMMSAKDLAKLTTYTINNYPQVLNYTKTQKLSMPSRKYEGVTTVPFLGKIEGVDGF 227

Query: 241 KTGYTRNSGFNIVTSLRYK----DDPIVAVVMGMPTSQERD 277
           KTG T  +G+ ++T++  K    ++ +V+V+MG PT  +R+
Sbjct: 228 KTGTTEKAGYCLITTMSLKPNNPNNKVVSVLMGAPTKYDRN 268


>gi|223928102|gb|ACN23817.1| D-alanyl-D-alanine carboxypeptidase [Clostridium sp. enrichment
           culture clone 7-14]
          Length = 455

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 110/235 (46%), Gaps = 24/235 (10%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-- 111
           ++++ID     M  G  +    YPASLTK+MT  +  E +   KL L+ +I  S +A   
Sbjct: 42  AAVLIDAETGTMLYGKNEHNELYPASLTKIMTALLTLEAVDQGKLSLDQEITASASALNG 101

Query: 112 -TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
              + S   +K     T E  +  ++  SAN+      E +SGS   F   M+ KAK++G
Sbjct: 102 LAADGSSAGIKVGETMTVENYLKCMLIVSANEACDVLAEAVSGSVSAFVDAMNAKAKELG 161

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI-------------RKF 217
            QNT + N +GLHD    T+A D  ++     K +P++     +             R+ 
Sbjct: 162 CQNTHFVNPNGLHDSQHYTSAWDLYLITAEALK-YPEFMSICDMGVAEIPASNLSETRRL 220

Query: 218 RYRNRIITN---HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
              N +++N   +  L +  H   GIKTG T  +G  +V+S       +++VV+G
Sbjct: 221 HTTNYLLSNWRANGYLYSDAH---GIKTGSTSEAGHCLVSSATKGSRTLISVVLG 272


>gi|160880714|ref|YP_001559682.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           phytofermentans ISDg]
 gi|160429380|gb|ABX42943.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           phytofermentans ISDg]
          Length = 429

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 111/222 (50%), Gaps = 13/222 (5%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+ ++D +  ++   K      P AS TK+MTL ++ E     K +L+  + V+  AA Q
Sbjct: 77  SACLMDASNGRVLYGKDAYKEMPMASTTKIMTLLVVLE-----KANLDDVVTVTSNAAKQ 131

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
              +L ++    +     + +L+  S ND + A  E + GS + F  +M+ KAK++G  +
Sbjct: 132 PDVQLNIQTGEQYILRDLLYSLMLESHNDTAVAIAEHVGGSVEGFCNMMTEKAKELGANH 191

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY------RNRIITNH 227
           T +K  +GL      TTARD +++     KN P++ K      +++      R+  + N 
Sbjct: 192 TSFKTPNGLDADGHYTTARDLSLIASYAIKN-PEFCKIVGTATYQFNEVNHKRSFNVNNR 250

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           ++ L  M    GIKTG+T  +G+  V ++      +V+ V+G
Sbjct: 251 DRFLYMMKGAIGIKTGFTGKAGYCFVGAVNIDGKTLVSTVLG 292


>gi|158320612|ref|YP_001513119.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii
           OhILAs]
 gi|158140811|gb|ABW19123.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii
           OhILAs]
          Length = 371

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 115/234 (49%), Gaps = 20/234 (8%)

Query: 35  LFLSIIMISMASELHAKPKY--------SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMT 85
            F+ I M+ MA+  + + K         S+IV+DV   ++   K    + P AS TK+MT
Sbjct: 7   CFIIIFMMLMANPSYGQEKMKNIQTGGKSAIVMDVETGRILYEKNMHLKLPMASTTKIMT 66

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
             +  E      + L  ++ +++ A     S +YL+          +  L+ RS ND + 
Sbjct: 67  ALLAIE-----NIPLEKRVKINQNAQGIEGSSIYLRANEEVKAIDLVYGLMLRSGNDAAA 121

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN- 204
           A    +SGS + FA LM+ +A KIG +NT + N  GLH +N  TTA D A++     KN 
Sbjct: 122 AIAYEVSGSIEAFADLMNERANKIGAKNTNFTNPHGLHHENHYTTAYDLALITREALKNS 181

Query: 205 -FPQYY--KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
            F +    K+++  +  Y++    N N  L      DG+KTGYT  SG  +V+S
Sbjct: 182 VFKEVVKTKFWTADRNEYKH--FANKNIGLEICEGGDGVKTGYTTRSGRCLVSS 233


>gi|304406838|ref|ZP_07388493.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           curdlanolyticus YK9]
 gi|304344371|gb|EFM10210.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           curdlanolyticus YK9]
          Length = 415

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 11/205 (5%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPAS+TK++T  +  E       ++   + VSK A  +  +++YL+E       Q +L +
Sbjct: 71  YPASITKIVTAIVALE-----SANVEDVVTVSKEARGEEGTRVYLEEGEQMKLWQLLLGM 125

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAK-KIGMQNTIYKNASGLHDKNQITTARDQ 194
           +  S ND +TA  E + GS++KFA  M+   + K    ++ ++N SGL D    TTA D 
Sbjct: 126 MVNSGNDAATAIAEHVDGSKEKFAEHMNAWIREKANAYDSQFRNPSGLPDPEHYTTAEDM 185

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNR----IITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           A +      N  ++ +    +K  +  +    ++ NHNKLL       G+K GYT  +G 
Sbjct: 186 AKITQYAMSN-EKFRELVGTKKVIWNGQTWQTVLVNHNKLLGTYDGATGVKNGYTTLAGS 244

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQE 275
            +V S       ++ V++  P+S +
Sbjct: 245 TLVASAERNGMELIGVILKAPSSNQ 269


>gi|157692820|ref|YP_001487282.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus
           SAFR-032]
 gi|157681578|gb|ABV62722.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus
           SAFR-032]
          Length = 385

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 128/268 (47%), Gaps = 13/268 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+ID    + + G  + E R  AS+TK+MT  +  E  + K       + VSK A   
Sbjct: 38  SAILIDGQSGRVLFGKDEHEKRRIASITKIMTAVLAIESGKMKD-----TVKVSKRAIQA 92

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S +YLKE    + E     L+ RS ND + A  E + GS + F  +M+ KA ++GM+N
Sbjct: 93  EGSSIYLKEGQKVSLEDLTYGLMLRSGNDAAVAIAEHVGGSLEGFIFMMNQKASELGMEN 152

Query: 174 TIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR--NRIITNHNKL 230
           T ++N  GL D KN  ++A D AIL     ++  QY K      ++ +       N NKL
Sbjct: 153 TNFQNPHGLDDHKNHYSSAYDMAILTRYAMEH-KQYQKIAGTTFYKAKTMEGYWKNKNKL 211

Query: 231 LNKMHNID-GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           L  ++    G KTGYT+ +   +V++    +  ++AV +  P   +      E   +F  
Sbjct: 212 LTGLYQYSTGGKTGYTKLAKRTLVSTAAKGNAALIAVTINAPDDWKDHISMFEY--AFDH 269

Query: 290 KKTLKHQQTHRKDNLSSTSLKKSLMIKK 317
            KT    +  R  +L  T  +K   IK+
Sbjct: 270 YKTYVLAEKGRLASLKGTFYEKKAFIKR 297


>gi|329122055|ref|ZP_08250663.1| serine-type D-Ala-D-Ala carboxypeptidase [Dialister micraerophilus
           DSM 19965]
 gi|327466862|gb|EGF12378.1| serine-type D-Ala-D-Ala carboxypeptidase [Dialister micraerophilus
           DSM 19965]
          Length = 323

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 102/209 (48%), Gaps = 13/209 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S  + D N  +  G K  E R YPAS TK++T  I  E    K   LN    ++  A  Q
Sbjct: 60  SVAIADGNTGKFLGGKDSELRVYPASTTKILTCIIALEEGHDK---LNDNALITPNATKQ 116

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           + + L LK     + ++ +  ++  S ND + +  E + G  + F  LM+ KAK IG  N
Sbjct: 117 DGTCLGLKPDLPISLQELLYGMMLVSGNDAAVSVAETVGGDYETFIKLMNAKAKNIGAVN 176

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR---YRN---RIITNH 227
           + + NA+GL DKN  TTA D A + +   KN  Q ++      F    YR+   R I N 
Sbjct: 177 SNFVNANGLTDKNHYTTASDMAKIAVYAMKN--QNFRKIVKEPFHMMTYRDGTIRRIENR 234

Query: 228 NKLLNKMH-NIDGIKTGYTRNSGFNIVTS 255
           N+ L   +   +GIKTG T  +G  +V S
Sbjct: 235 NEFLESGYEGANGIKTGMTEAAGDCLVAS 263


>gi|295706466|ref|YP_003599541.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium DSM 319]
 gi|294804125|gb|ADF41191.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium DSM 319]
          Length = 382

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 128/255 (50%), Gaps = 25/255 (9%)

Query: 34  ILFLSIIMI------SMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           I++L I+++      S++S   +   +S+I+++    ++   K  D+    AS+TK+MT 
Sbjct: 8   IIYLFIVLLCLSGWPSISSAAGSVSAHSAILMEQKSGRVLYAKNADQVSRIASITKIMTA 67

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            +  E   S K+  N  + VS +A     S +YL E      +  +  L+ RS ND + A
Sbjct: 68  ILAIE---SGKI--NKTVTVSHSAVGVEGSSVYLIEGEKIKLKDLVYGLMLRSGNDAAVA 122

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLRKNF 205
             E + GSE  F  LM+ KA++IGM NT ++N  GL D +N  +TA D A+L      N 
Sbjct: 123 IAEAVGGSEDGFVYLMNKKAEEIGMTNTTFQNPHGLDDHENHRSTAHDMALLMRYAMNN- 181

Query: 206 PQYYKYFSIRKFRYR--------NRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSL 256
            + +K  S  K  YR        +R+  N NKLL  ++    G KTGYT+ +   +VT+ 
Sbjct: 182 -KIFKEISGTKV-YRMKHPEEKWDRVWKNKNKLLTTLYAYCTGGKTGYTKLAKRTLVTTA 239

Query: 257 RYKDDPIVAVVMGMP 271
                 ++AV +  P
Sbjct: 240 TKDGMDLIAVTINAP 254


>gi|219667694|ref|YP_002458129.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
           hafniense DCB-2]
 gi|219537954|gb|ACL19693.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
           hafniense DCB-2]
          Length = 423

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 115/234 (49%), Gaps = 19/234 (8%)

Query: 52  PKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS 107
           P+ SS   I+ID+   Q    K  D P  PAS TK+M+  I  E     K +LN  +   
Sbjct: 31  PELSSEGAILIDITTGQTLFAKNPDHPFEPASTTKIMSALIALE-----KGNLNDLVTAG 85

Query: 108 KTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
            +   Q     +++YL+     T E  + AL+  SAND + A  E I G  + F  LM+ 
Sbjct: 86  PSVLDQELTQGTRIYLEPGEQVTLENLLYALLLNSANDAAVAIAEHIGGDVQGFTDLMNA 145

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR-KFRYRNR- 222
           KAK+IG  NT +KN SGL +   +TTARD A++     +N P    Y   + K   RNR 
Sbjct: 146 KAKEIGALNTSFKNPSGLSEDGHLTTARDLAMIARFAYQN-PVLRDYVKTKTKIIPRNRE 204

Query: 223 -IIT---NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            I T   N N+ +     + G+KTGYT ++G   V +       ++ VV+  P+
Sbjct: 205 NIPTEMYNINEFIWTEPTVTGMKTGYTTSAGNTYVATAERDGRALLGVVLKSPS 258


>gi|239827577|ref|YP_002950201.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70]
 gi|239807870|gb|ACS24935.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70]
          Length = 381

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 124/254 (48%), Gaps = 24/254 (9%)

Query: 35  LFLSIIMI------SMASELHAKPKYSSIVIDVNKNQMTGFKQDE--PRYPASLTKMMTL 86
           LF++ +M+        A  ++     S+I+++ N  ++  F++D    R  AS+TK+MT+
Sbjct: 9   LFIAAVMMLFSCIPDRAKAMNGVSAQSAILMEQNSGRIL-FEKDAHTKRRIASITKIMTV 67

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            +  E   S K+  +  + VS  A     S +YLKE         +   + RS ND + A
Sbjct: 68  ILAIE---SGKM--DDTVTVSARAVHTEGSSIYLKEGEKIKLRDLVYGTMLRSGNDAAVA 122

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLRKNF 205
             E + GS + F  LM+ KA +IGM+NT + N  GL D +N  +TA D A+L     KN 
Sbjct: 123 IAEHVGGSVEGFVFLMNQKAAEIGMRNTHFANPHGLDDSENHYSTAYDMALLMQYAMKN- 181

Query: 206 PQYYKYFSIRKFRY-------RNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
            ++ K      +R         +R+  N NKLL  ++    G KTGYT+ +   +VT+  
Sbjct: 182 KEFRKISGTEVYRAPASPGEDWDRVWRNKNKLLTSLYEYCTGGKTGYTKRAKRTLVTTAS 241

Query: 258 YKDDPIVAVVMGMP 271
                +++V +  P
Sbjct: 242 KGGMDLISVTLDAP 255


>gi|42526491|ref|NP_971589.1| penicillin binding protein [Treponema denticola ATCC 35405]
 gi|41816684|gb|AAS11470.1| penicillin binding protein [Treponema denticola ATCC 35405]
          Length = 478

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 106/213 (49%), Gaps = 22/213 (10%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP---SKLYLKEKTYFTTEQGIL 133
           PASLTK++T+Y + +  Q K L      P  +  A   P   + + L E    + E+ I 
Sbjct: 125 PASLTKLVTIYTMLQKPQFKDLE-KVVFPPEEAWAIFLPKGAAWMGLGENQSLSIEELIR 183

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +   S ND + A      GS +KF + M+   K +G+++T ++++SGL +KNQ TTARD
Sbjct: 184 GMAVCSGNDAALAAALLTEGSIEKFTLKMNEAVKTMGLKSTRFEDSSGLSEKNQ-TTARD 242

Query: 194 QAILGILLRKNFPQYYKYF-SIRKFRYRNR----------------IITNHNKLLNKMHN 236
            A+  +   K +P+  K F S+ +  Y  +                I    N LL K+  
Sbjct: 243 FALFSLHYLKQYPENLKKFHSVNEISYPQKHNILIKKNSDGLKDFQIKPATNTLLKKIEG 302

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            DG+KTG+   SGFNI  + +   +  +AV++G
Sbjct: 303 CDGLKTGFIYESGFNISLTAQKNGERFIAVILG 335


>gi|302379860|ref|ZP_07268343.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312338|gb|EFK94336.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
           ACS-171-V-Col3]
          Length = 384

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 112/221 (50%), Gaps = 8/221 (3%)

Query: 65  QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKT 124
           ++  + +++P   ASLTK+MT  ++ E + + K  L+ +I +    A    S + LK+  
Sbjct: 38  ELLNYNENKPLAIASLTKIMTYVLVMEDINANKYKLDDKIKIQTQYAKPEASTMQLKKGE 97

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL-- 182
             T    I  ++  S ND +        GS  KF   M+ KA ++ +++  + +ASG   
Sbjct: 98  ELTVNDLIRGMMIVSGNDAADELAVKSEGSVGKFVERMNKKAAELELESAKFYSASGYPE 157

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL--LNKMHNIDGI 240
           +DK  + +A+D A L      N+PQ   Y   +K    +R       +  L K+  +DG 
Sbjct: 158 NDKENLMSAKDLAKLTTYTINNYPQVLNYTKTQKLVMPSRKYEAATTVPFLGKIEGVDGF 217

Query: 241 KTGYTRNSGFNIVTSLRYK-DDP---IVAVVMGMPTSQERD 277
           KTG T  +G+ ++T++  K ++P   +V+V+MG PT  +R+
Sbjct: 218 KTGTTEKAGYCLITTMSLKPNNPKNKVVSVLMGAPTKYDRN 258


>gi|213609716|ref|ZP_03369542.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 267

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 84/149 (56%), Gaps = 1/149 (0%)

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND   A  +F +GS+  F  LM++    +G++NT ++   GL    Q ++ARD A++
Sbjct: 2   QSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALI 61

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSL 256
           G  L ++ P  Y  +  ++F +      N N LL +   N+DGIKTG+T  +G+N+V S 
Sbjct: 62  GQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLVASA 121

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELIT 285
                 +++ VMG  T + R+ ++ +L+T
Sbjct: 122 TEGQMRLISAVMGGRTYKGRETESKKLLT 150


>gi|229011816|ref|ZP_04168997.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
 gi|228749447|gb|EEL99291.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
          Length = 338

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 124/229 (54%), Gaps = 17/229 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S+I+ID N  ++   K +E P   A+L+K+MT YI  E L   K+ L+  + +S     A
Sbjct: 37  SAILIDTNSGEIVYKKNEETPIQSATLSKLMTEYIALEQLNEGKIQLDELVKISNEVFRA 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             +P ++  K+KT  T    + AL     N  + A  E I+G+E  F +LM++KAK++ +
Sbjct: 97  ETSPIQVTSKDKT--TVRDLLHALFLTGNNRSALALAEHIAGNEDNFTLLMNDKAKQLKL 154

Query: 172 -QNTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIIT 225
            Q + + NA+G++   +K   TT+ D A L   L K+FP       +   +F +++  + 
Sbjct: 155 SQPSPFLNATGINNDTNKQSTTTSIDVAKLATQLVKDFPDVLNVTKLTSYQFTFKDSKVF 214

Query: 226 NHNKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N NK+   LN   K+  +DG++T ++ N  ++ V++    D  +++V++
Sbjct: 215 NTNKMIYSLNKNIKLQGVDGLQTSFSTNGNYSFVSTATRGDTRLISVIL 263


>gi|218666161|ref|YP_002427291.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|218518374|gb|ACK78960.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 389

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 108/231 (46%), Gaps = 2/231 (0%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
            ++++DVN  Q +     ++P  P+ L K+MT Y++++  +   +     + VS  A   
Sbjct: 47  GAVLLDVNSGQVLVAENAEKPLNPSGLVKLMTAYVMYQAEKQGLVPPQRPVHVSNEAWHA 106

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++++     T  Q    L+    ND + A  + ++GS   F  LM++ A  +G+Q+
Sbjct: 107 QGSRMFIQPHLPVTMTQLEHGLLIDGGNDAAVAIAQTVAGSVGGFVDLMNHDAAAMGLQH 166

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           T + N  GL    Q +TA D A L   L + +P   +      + Y +    N+N L  +
Sbjct: 167 THFTNPDGLPQPGQTSTALDIARLSKRLIQAYPHVLQVAGKVSYTYNHITQYNYNPLAGQ 226

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
             NI+G+  G    + +N+  S       +VAVV+G P+       A  L+
Sbjct: 227 -ENINGLGVGLAAKNSWNLDVSATRGGRTLVAVVLGAPSRSAAGSDASALL 276


>gi|51893725|ref|YP_076416.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51857414|dbj|BAD41572.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 374

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 108/221 (48%), Gaps = 22/221 (9%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTT 128
           DEP  PASLTK+MTL++ F+ +++ ++  +  + VS+ A   N    S ++L+     T 
Sbjct: 17  DEPIAPASLTKLMTLHLAFKRIEAGQMSYDDPVVVSRNAWAANFPDSSLMFLEPGDKVTV 76

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            + +  L   S ND + A  E I G+ + F  +M+++A+ +G +   + +  GL  +NQ+
Sbjct: 77  GEVMKGLAIVSGNDAAVALAEHIGGTVENFVKMMNDEAQALGFKTFRFVDPHGLSPQNQV 136

Query: 189 TTARDQ--AILGILLRK------------NFPQYYKYFSIRKF---RYRNRIIT--NHNK 229
           T       A L I L              ++PQY      R+       +  IT  N N 
Sbjct: 137 TAGEFARFARLYIQLHPESLEMLHSQKEYSYPQYENLSDARQAVTSPEAHEPITQMNRNG 196

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           LL     +DG+KTG+   +GFN+  + +     +V V++G+
Sbjct: 197 LLWTYEGVDGLKTGFVDEAGFNLAVTAQRGGMRLVGVLLGI 237


>gi|203284509|ref|YP_002222249.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia duttonii Ly]
 gi|203288043|ref|YP_002223058.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia recurrentis A1]
 gi|201083952|gb|ACH93543.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia duttonii Ly]
 gi|201085263|gb|ACH94837.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia recurrentis A1]
          Length = 333

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 109/213 (51%), Gaps = 20/213 (9%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN----PSKLYLKEKTYFTTEQGI 132
           PASLTK++T+Y      + + + LN  +P+S +A+  N     S ++L+E    T E+ +
Sbjct: 85  PASLTKLVTIYTALVEAKKQNIDLNAIVPISSSASYYNLPLDSSLMFLEEGHKVTFEELL 144

Query: 133 LALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
             L+  S ND + A  EFI G +   F  LM++   K+ + NT + + SG + KN   TA
Sbjct: 145 KGLVVSSGNDAAIAIAEFIVGKDLNNFVNLMNDNVFKLKLINTSFVDTSG-YSKNNKITA 203

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRY---RNRIITNHNKLLN-KMHN----------I 237
            + A+        F    K  S++ F Y    N   T+ +K+LN K  N           
Sbjct: 204 LEMALFAKTYIDEFEFMLKIHSLKDFIYPKPENLGSTSSSKMLNLKQDNKNILILNYPYA 263

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           DG+KTGY + SG N+V + +  D  ++AV++G+
Sbjct: 264 DGLKTGYIKTSGLNLVATAKKDDIRLIAVILGV 296


>gi|332297402|ref|YP_004439324.1| Serine-type D-Ala-D-Ala carboxypeptidase [Treponema brennaborense
           DSM 12168]
 gi|332180505|gb|AEE16193.1| Serine-type D-Ala-D-Ala carboxypeptidase [Treponema brennaborense
           DSM 12168]
          Length = 457

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 106/218 (48%), Gaps = 22/218 (10%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGI 132
           PAS+TK++ +Y++F+ + + ++ L+  +P+   +    A  N S ++L +    T E+ +
Sbjct: 100 PASMTKLVVMYVVFQEIAAGRISLSDVVPLPPESWAVNAPPNSSLMFLGQGQTVTLEELL 159

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           L L   S ND + A  +++SGS   F   M+ + +K+G+++T +   SG  + N +TT R
Sbjct: 160 LGLAVASGNDAAVAVADYVSGSVGAFVDRMNAEMEKLGLEHTRFVEPSGYSELN-LTTPR 218

Query: 193 DQAILGILLRKNFPQYY-KYFSIRKFRYRNR----------------IITNHNKLLNKMH 235
           + A         +P+   K+ S R   Y                   +  + NKLL  + 
Sbjct: 219 EFAAFARTYVNRYPEALEKFHSARSIAYPQEKNLAPWHAGTGSQPPIVQQSTNKLLGVLP 278

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
             DG+KTG+   SG+N+  +        +AV+M  P S
Sbjct: 279 GCDGLKTGFIYESGYNLSLTAERGGTRFLAVMMRGPGS 316


>gi|213028272|ref|ZP_03342719.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 239

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 84/149 (56%), Gaps = 1/149 (0%)

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND   A  +F +GS+  F  LM++    +G++NT ++   GL    Q ++ARD A++
Sbjct: 3   QSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALI 62

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSL 256
           G  L ++ P  Y  +  ++F +      N N LL +   N+DGIKTG+T  +G+N+V S 
Sbjct: 63  GQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLVASA 122

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELIT 285
                 +++ VMG  T + R+ ++ +L+T
Sbjct: 123 TEGQMRLISAVMGGRTYKGRETESKKLLT 151


>gi|198284618|ref|YP_002220939.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|198249139|gb|ACH84732.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 415

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 108/231 (46%), Gaps = 2/231 (0%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
            ++++DVN  Q +     ++P  P+ L K+MT Y++++  +   +     + VS  A   
Sbjct: 73  GAVLLDVNSGQVLVAENAEKPLNPSGLVKLMTAYVMYQAEKQGLVPPQRPVHVSNEAWHA 132

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++++     T  Q    L+    ND + A  + ++GS   F  LM++ A  +G+Q+
Sbjct: 133 QGSRMFIQPHLPVTMTQLEHGLLIDGGNDAAVAIAQTVAGSVGGFVDLMNHDAAAMGLQH 192

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           T + N  GL    Q +TA D A L   L + +P   +      + Y +    N+N L  +
Sbjct: 193 THFTNPDGLPQPGQTSTALDIARLSKRLIQAYPHVLQVAGKVSYTYNHITQYNYNPLAGQ 252

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
             NI+G+  G    + +N+  S       +VAVV+G P+       A  L+
Sbjct: 253 -ENINGLGVGLAAKNSWNLDVSATRGGRTLVAVVLGAPSRSAAGSDASALL 302


>gi|147678303|ref|YP_001212518.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum
           thermopropionicum SI]
 gi|146274400|dbj|BAF60149.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum
           thermopropionicum SI]
          Length = 371

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 111/224 (49%), Gaps = 16/224 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAAT 112
           ++I++DV   Q+   K    R  PASLTK+MT  +  E       +L   + V  + AA 
Sbjct: 31  AAILMDVQTGQVYYAKNHYRRAEPASLTKIMTAVVALE-----NGNLGDVVTVGGRAAAV 85

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S + L++    T E+ + A +  SAND + A  E + GS ++F  +M+ KA  +G+ 
Sbjct: 86  SMGSIIDLRKGEKITLEELLKAALISSANDSTVAIAEHVGGSHERFIKMMNAKAAVLGLF 145

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRY-----RNRIIT 225
            T Y N +G HD N  TTARD A+L        P++ +    ++   R+     R   I 
Sbjct: 146 GTRYANTNGYHDPNHYTTARDLAVL-TRCALGHPKFNELVQTKEAAVRWVEPPEREEKII 204

Query: 226 NHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N N+LL      IDG+KTG T  +G  +  S   +   ++AVV+
Sbjct: 205 NSNRLLFGGYEGIDGVKTGTTPMAGNCLAASATREGRRLIAVVL 248


>gi|229170279|ref|ZP_04297958.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
 gi|228613202|gb|EEK70348.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
          Length = 338

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 124/229 (54%), Gaps = 17/229 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S+I+ID N  ++   K +E P   A+L+K+MT YI  E L   K+ L+  + +S     A
Sbjct: 37  SAILIDTNSGEIVYKKNEETPIQSATLSKLMTEYIALEQLNEGKIQLDELVKISNEVFRA 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             +P ++  K+KT  T    + AL     N  + A  E I+G+E  F +LM++KAK++ +
Sbjct: 97  ETSPIQVTSKDKT--TVRDLLHALFLTGNNRSALALAEHIAGNEDNFTLLMNDKAKQLKL 154

Query: 172 -QNTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIIT 225
            Q + + NA+G++   +K   TT+ D A L   L K+FP        +  +F +++  + 
Sbjct: 155 SQPSPFLNATGINNDTNKQSTTTSIDVAKLATQLVKDFPDVLNVTKLTSYQFTFKDSKVF 214

Query: 226 NHNKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N NK+   LN   K+  +DG++T ++ N  ++ V++    D  +++V++
Sbjct: 215 NTNKMIYSLNKNIKLQGVDGLQTSFSTNGNYSFVSTATRGDTRLISVIL 263


>gi|219668772|ref|YP_002459207.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
           hafniense DCB-2]
 gi|219539032|gb|ACL20771.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
           hafniense DCB-2]
          Length = 423

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 120/249 (48%), Gaps = 17/249 (6%)

Query: 35  LFLSIIMISMASELHAKPKYS---SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIF 90
           +F+  +  +  ++  A P+ S   + +IDV   Q    K  D+   PAS TK+MT  +  
Sbjct: 16  IFVPALTAAPETQTAAPPEISGEAAYLIDVQSGQTLYSKNGDQLMAPASTTKIMTGLLGI 75

Query: 91  EYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           E    + +     +  S+T    N    +++YL+     + E  + AL+  SAND + A 
Sbjct: 76  ELGNPEDI-----VTASETMLDYNTVYGTRIYLEPGEQLSLEDMLYALLLNSANDAAVAI 130

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--F 205
            E ISG+   F  LM+ +A  +G++NT +KN SGL+++  + TA D A +      N  F
Sbjct: 131 AEHISGNTAAFVSLMNQRAADLGLKNTTFKNPSGLNEEGHLITAHDLARIAQAAYANPVF 190

Query: 206 PQYYKYFSIRKFRYRNRI---ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
             Y K  S    R +  +   + N NKLL +   I G+KTGYT  +   +V S       
Sbjct: 191 RDYIKTKSHVIPRAKENVPIEMINENKLLWRDDTITGMKTGYTSVAQNCLVASASRDGRD 250

Query: 263 IVAVVMGMP 271
           ++ V++  P
Sbjct: 251 VIGVILKSP 259


>gi|294501119|ref|YP_003564819.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium QM B1551]
 gi|294351056|gb|ADE71385.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium QM B1551]
          Length = 382

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 127/255 (49%), Gaps = 25/255 (9%)

Query: 34  ILFLSIIMI------SMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           I++L I+++      S +S   +   +S+I+++    ++   K  D+    AS+TK+MT 
Sbjct: 8   IIYLFIVLLCLSGWPSTSSAAGSVSAHSAILMEQKSGRVLYAKNADQVSRIASITKIMTA 67

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            +  E   S K+  N  + VS +A     S +YL E      +  +  L+ RS ND + A
Sbjct: 68  ILAIE---SGKI--NKTVTVSHSAVGVEGSSVYLVEGEKIKLKDLVYGLMLRSGNDAAVA 122

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLRKNF 205
             E + GSE  F  LM+ KA++IGM NT ++N  GL D +N  +TA D A+L      N 
Sbjct: 123 IAEAVGGSEDGFVYLMNKKAEEIGMTNTTFQNPHGLDDHENHRSTAHDMALLMRYAMNN- 181

Query: 206 PQYYKYFSIRKFRYR--------NRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSL 256
            + +K  S  K  YR        +R+  N NKLL  ++    G KTGYT+ +   +VT+ 
Sbjct: 182 -KIFKEISGTKV-YRMKHPEEKWDRVWKNKNKLLTTLYAYCTGGKTGYTKLAKRTLVTTA 239

Query: 257 RYKDDPIVAVVMGMP 271
                 ++AV +  P
Sbjct: 240 TKDGMDLIAVTINAP 254


>gi|326791206|ref|YP_004309027.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
           DSM 5427]
 gi|326541970|gb|ADZ83829.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
           DSM 5427]
          Length = 436

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 106/215 (49%), Gaps = 31/215 (14%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQG 131
           +YPAS+TK+MT  +  E LQ         I  SK A     +  S + +      T +Q 
Sbjct: 56  QYPASITKLMTALLAIENLQPTD-----TITFSKEAIFGIERGSSHIGMDVGEQITVDQA 110

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  L+  SAN+V+    E +SGS   FAI MS++AK++G  NT + N  GLHD+N  TTA
Sbjct: 111 LHGLLLMSANEVANGLAEAVSGSIDAFAIRMSDRAKELGALNTHFVNPHGLHDENHYTTA 170

Query: 192 RDQAILGILLRKNFPQYYKYF--SIRKFRYR---------NRIITNHNKLLNKM------ 234
            D +++   L  N     +YF   ++ + Y+          R ++  +K+ N +      
Sbjct: 171 YDMSLIASYLADN-----EYFLNIMKDYIYQINGTNKTDEIRYLSQDHKMFNPLKDASIF 225

Query: 235 -HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             ++ G KTGYT  +   +VT  +     +VAVVM
Sbjct: 226 REDVIGGKTGYTDQARHTLVTIAKEGKTTLVAVVM 260


>gi|253576372|ref|ZP_04853702.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844265|gb|EES72283.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 399

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 134/301 (44%), Gaps = 23/301 (7%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A  +HA+   ++ VIDV   ++      +   P ASLTK+MT  +  E+ +     L+  
Sbjct: 37  APSIHAQ---AAAVIDVTSGRLLYSLHGDDELPIASLTKIMTAIVAIEHGK-----LSDM 88

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           + V K A  +  S LYL      + E  +  L+ RS ND +TA  E + GSE+ F  LM+
Sbjct: 89  VTVGKNAYGKEGSSLYLHLGEEMSLENMLYGLMLRSGNDAATAIAEHVGGSEEGFVYLMN 148

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI--------- 214
            KAK +G+ +T ++N  GL  K   ++A D A L     KN P + +             
Sbjct: 149 EKAKLLGLTHTHFQNPHGLDAKGHYSSANDLAKLTSYALKN-PHFKEIVRTPSKTAPNPN 207

Query: 215 RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
             + Y+     N NK+L      DG+KTGYT+ +   +V+S       I  V +      
Sbjct: 208 DPWDYK---WLNKNKMLRFYDGADGVKTGYTKTARRCLVSSATRNGQQIAVVTLNDGDDW 264

Query: 275 ERDQKALEL-ITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAH 333
              +K L+    +F     +   Q      ++    K +L  +++ +   + K ++A+  
Sbjct: 265 NDHRKLLDYSFANFPLTTLISKGQAIENGLVTGADFKYALAPEEVGKVERRLKLVEARTG 324

Query: 334 S 334
           S
Sbjct: 325 S 325


>gi|227872772|ref|ZP_03991092.1| conserved hypothetical protein [Oribacterium sinus F0268]
 gi|227841371|gb|EEJ51681.1| conserved hypothetical protein [Oribacterium sinus F0268]
          Length = 464

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 137/277 (49%), Gaps = 22/277 (7%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEY 92
           ILF S++ ++ +         S+IV+D     +   K  + R YPAS+TK+MT  ++ E+
Sbjct: 22  ILFHSVVAMAASWPTADLTAESAIVVDAETGAVLYEKNGDVREYPASITKVMTALVVLEH 81

Query: 93  LQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
                  L  ++  S  A     +  S   ++E    T    + AL+ +SAN+ + A  E
Sbjct: 82  AS-----LEDKVTFSHDAVYNVDRGSSNAQIEEGDVLTVNDCLHALLLKSANEAANALAE 136

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQ 207
            ++GS + FA +M+ KAK++G   T ++N SGL D+N  TTARD A++G+   +N  F +
Sbjct: 137 HVAGSREAFAEMMNEKAKELGCTGTHFQNPSGLQDENHYTTARDMALIGMAAFQNKAFLE 196

Query: 208 YYKYFS-----IRKFRYRNRIITNHNKLLNKMHNID----GIKTGYTRNSGFNIVTSLRY 258
             K  S     +++    N I   H  +L+     D      KTGYT+ +G  +++    
Sbjct: 197 IEKNLSHTLGNLKRLPEGNTIYMEHKMMLSNTKFYDKRVVAGKTGYTQIAGNTLISLAED 256

Query: 259 KDDPIVAVVM-GMPTSQERDQKA-LELITSFLEKKTL 293
           +   +V VV+     S   D KA L+L  S  E +TL
Sbjct: 257 QGRKVVTVVLKDKNPSHYTDTKALLDLAFSETENQTL 293


>gi|157151599|ref|YP_001450863.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157076393|gb|ABV11076.1| D-Alanyl-D-Alanine carboxypeptidase [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 460

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 126/259 (48%), Gaps = 35/259 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +P+ SS++ID N   +      DE R PAS++K+MTLY++FE +   KL  +T I  S+T
Sbjct: 42  RPR-SSLIIDGNTGDVLWQDNIDEVRDPASMSKLMTLYLLFEAMGQGKLSEDTIIKASQT 100

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILM 162
              QN + +Y      +     +T  + I   +  S+N  +     ++S ++   F   M
Sbjct: 101 --DQNIAGIYEISNNKIVAGVDYTISELITMTVVPSSNATTVMIANYLSNNDPDAFLDQM 158

Query: 163 SNKAKKIGMQNTIYKNASGL-------------HDKNQI--TTARDQAILGILLRKNFPQ 207
           ++KAK++GM NT + NASG              +D N    TTARD AIL     K +P 
Sbjct: 159 NSKAKELGMTNTHWYNASGAAASSFKGFYTPQRYDNNAANQTTARDLAILAYNFVKKYPG 218

Query: 208 YYKY-----FSIRKFRYRNRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRY 258
             KY      +++K          +N  +      +  +DG+KTG +    FN + +++ 
Sbjct: 219 ILKYTNKPVVTVKKGTPYEETFETYNYSVPGAKYGLEGVDGLKTGSSPRGAFNYIATVKR 278

Query: 259 KDDPIVAVVMGMPTSQERD 277
            +  I++V+MG+    ++D
Sbjct: 279 GEQRIISVIMGVGDWSDQD 297


>gi|225181453|ref|ZP_03734896.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
           AHT 1]
 gi|225167851|gb|EEG76659.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
           AHT 1]
          Length = 406

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 100/199 (50%), Gaps = 13/199 (6%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           +PAS+TK++T  ++ E     ++ + +++     A     S LYL+     T E  + AL
Sbjct: 54  FPASITKILTTILLLENAAEDEVAVASEL-----AEKTRGSSLYLRRGQELTVEDLLYAL 108

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + RSAND S    E +SGS   FA LM+ KA++ G  N+ + N  GL D+N +TTA D A
Sbjct: 109 MLRSANDGSVVAAELVSGSVDSFAQLMNQKARQAGAINSTFTNPHGLPDENHLTTAYDMA 168

Query: 196 ILGILLRKNFPQYYKYFS------IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
           ++     +N  Q ++  +      I      +  + N   LL+    + GIKTGYT  +G
Sbjct: 169 MITRYAMQN--QRFRDLAATQRHTIVWPEGEDSYLINRIPLLSTYEGMLGIKTGYTTPAG 226

Query: 250 FNIVTSLRYKDDPIVAVVM 268
              V + +     ++ VV+
Sbjct: 227 RTFVGAAQRDGLELITVVL 245


>gi|218289386|ref|ZP_03493620.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240492|gb|EED07673.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 456

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 109/235 (46%), Gaps = 11/235 (4%)

Query: 55  SSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++V+D++   +   K      YPAS+TK+MT  +     +   +     +  S  A  Q
Sbjct: 73  AAVVMDMDTGAVVYAKHPTALHYPASITKIMTALLALRLGRLTDV-----LTASPDAVRQ 127

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
            P KLY++     T +  +  L+  SAND +    E   GS   FA +M+ +A+ +G  +
Sbjct: 128 PPDKLYMRVGEKATLKDLLYGLLIDSANDAAVEIAERYGGSVAHFADMMNAEARALGATH 187

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN----RIITNHNK 229
           T + N SGL D   +TTA D A++        P++      R + ++       +TN N+
Sbjct: 188 THFVNPSGLPDPRHVTTAYDMAVIA-RAAMQIPEFRTIVDTRSYEWKGTAWQATLTNLNR 246

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +L       G+KTG+T  +   +V +        +AV+M  PT  E  Q A  L+
Sbjct: 247 MLFTYPGAIGVKTGFTSVAHETLVVAATRGGTTFLAVLMDCPTDAEIRQDATNLL 301


>gi|317128528|ref|YP_004094810.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473476|gb|ADU30079.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           cellulosilyticus DSM 2522]
          Length = 377

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 102/201 (50%), Gaps = 13/201 (6%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MT  +  E  +     L+  + VS  A     S +YL  +        +  L+ 
Sbjct: 57  ASITKIMTAILAIESGE-----LDEWVTVSSNAEGTEGSSIYLVAEEEIQLRDLVYGLML 111

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAI 196
           RS ND + A  E + GS + F  +M+ KA+++GM  T++ N  GL D +   +TA D A+
Sbjct: 112 RSGNDSAVAIAEHVGGSLEGFVYMMNEKAQELGMTRTVFSNPHGLDDHEEHYSTAYDMAL 171

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRN-----RIITNHNKLLNKMH-NIDGIKTGYTRNSGF 250
           L      N  +Y +    + +R +N     R+  N N+LL +++ N  G KTGYT+ +  
Sbjct: 172 LTRYAMDN-EEYKEIAGTKSYRSKNKDDHYRVFNNKNRLLTQLYRNSTGGKTGYTKRAKR 230

Query: 251 NIVTSLRYKDDPIVAVVMGMP 271
            +V++   +D  ++AV +  P
Sbjct: 231 TLVSTAEKEDVELIAVTINAP 251


>gi|160941724|ref|ZP_02089051.1| hypothetical protein CLOBOL_06620 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435221|gb|EDP12988.1| hypothetical protein CLOBOL_06620 [Clostridium bolteae ATCC
           BAA-613]
          Length = 381

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 21/225 (9%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTT 128
           D+  YPAS+TK+MT  ++ E        L+ ++  S TA T        + +      T 
Sbjct: 15  DKQFYPASITKLMTALLVAE-----NCSLDDKVTFSATATTNLEAGAVSINMTAGDVMTV 69

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            Q + AL+ +SAN+V  A  E ++GS  KFA +M+ KA  +G  NT + N  GL+D N  
Sbjct: 70  RQCLYALLLKSANEVGNALAEHVAGSNAKFAEMMNAKAAALGCTNTHFTNPHGLNDSNHY 129

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-------ITNHNKLLNKMH-----N 236
           TT  D A++     +N        S R +     I       +T  +K+LN         
Sbjct: 130 TTPHDMALIARAAFQN-DVVKTVASTRTYTLPATIKNSSGLTVTIGHKMLNPNDARYYPG 188

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           + G KTGYT  +G  +VT++      ++AV+M   ++   D KAL
Sbjct: 189 VIGGKTGYTSKAGNTLVTAVEKDGVRLIAVIMKSKSTHYTDTKAL 233


>gi|262283155|ref|ZP_06060922.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus sp. 2_1_36FAA]
 gi|262261407|gb|EEY80106.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus sp. 2_1_36FAA]
          Length = 450

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 127/261 (48%), Gaps = 35/261 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +P+ SS++ID N   +      DE R PAS++K+MTLY++FE +   KL  +T I  S+T
Sbjct: 32  RPR-SSLIIDGNTGDVLWQDNIDEVRDPASMSKLMTLYLLFEAMGQGKLSEDTIIKASQT 90

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILM 162
              QN + +Y      +     +T  + I   +  S+N  +     ++S ++   F   M
Sbjct: 91  --DQNIAGIYEISNNKIVAGVDYTISELITMTVVPSSNATTVMIANYLSNNDPDAFLDQM 148

Query: 163 SNKAKKIGMQNTIYKNASGL-------------HDKNQI--TTARDQAILGILLRKNFPQ 207
           ++KAK++GM NT + NASG              +D N    TTARD AIL     K +P 
Sbjct: 149 NSKAKELGMTNTHWYNASGAAASSFKGLYTPQRYDNNAANQTTARDLAILAYNFVKKYPG 208

Query: 208 YYKY-----FSIRKFRYRNRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRY 258
             KY      +++K          +N  +      +  +DG+KTG +    FN + +++ 
Sbjct: 209 ILKYTNKPVVTVKKGTPYEETFETYNYSVPGAKYGLEGVDGLKTGSSPRGAFNYIATVKR 268

Query: 259 KDDPIVAVVMGMPTSQERDQK 279
            +  I++V+MG+    ++D +
Sbjct: 269 GEQRIISVIMGVGDWSDQDGE 289


>gi|23097466|ref|NP_690932.1| serine-type D-Ala-D-Ala carboxypeptidase [Oceanobacillus iheyensis
           HTE831]
 gi|22775689|dbj|BAC11967.1| serine-type D-Ala-D-Ala carboxypeptidase [Oceanobacillus iheyensis
           HTE831]
          Length = 447

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 143/292 (48%), Gaps = 41/292 (14%)

Query: 33  KILFLSI----IMISM--------ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           K+L L++    +  SM        A+EL  + + S+I++D    ++   K  D    PAS
Sbjct: 7   KVLLLAVASILVFTSMLTATTTVQANELDLESE-SAILVDGETGKVLYAKNPDVALPPAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEKTYFTTEQGILAL 135
           +TKMMT Y+++E +++  +  +T   +S      +A  + S + L+++  +T ++   A+
Sbjct: 66  MTKMMTEYLVWEAIENGDITWDTTTEISDYPYSISANNSFSGVGLRQQQEYTVKELYEAM 125

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------- 186
              S N  + A  E I+GSE +F  +M+ K +++G+Q   + N++GL +++         
Sbjct: 126 AINSDNATTIALAELIAGSESEFVKMMNEKGEEMGLQEFKFVNSTGLDNEDLGDNYPEGT 185

Query: 187 -----QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK-------- 233
                 + +AR  A+LG  L  ++ +  +  SI +  +  + I N N +L          
Sbjct: 186 NPNDTNLLSARSAALLGYHLVNDYEEALEISSIPQTDFGGQTINNWNYMLPHEGDNLASY 245

Query: 234 -MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
               +DG+KTG+T  +G++   +       ++ VVM   +  ER ++  +L+
Sbjct: 246 YYEGVDGLKTGFTDLAGYSFTGTAERNGQRLITVVMKTGSETERFEETAKLL 297


>gi|313901633|ref|ZP_07835069.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313468095|gb|EFR63573.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 521

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 109/219 (49%), Gaps = 25/219 (11%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           R PAS TK++T  +  E+      +L+  + VS+ AA    S + L     ++  + +  
Sbjct: 208 RAPASTTKILTAIVALEFG-----NLDDVVTVSEHAAATEGSTMDLVAGERYSLRELLWG 262

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           L+  S ND + A  E I+GSE  FA LM+  A ++G+++T + N  GLHD    T+A D 
Sbjct: 263 LMLESGNDAAVAIAEHIAGSEAAFARLMNETALRLGLRDTHFTNPHGLHDPAHFTSAYDL 322

Query: 195 AILGILLRKNFPQYYKYFS-----IRKFRYRN-----RIITNHNKLLNKMHNIDGIKTGY 244
           A++       +     YF+       K   R      RI+++ N+LL     I G+KTG 
Sbjct: 323 AVM-----TRYALANDYFARLVCQPEKVLCRGDGDWVRILSSTNRLLWYHEWIRGVKTGT 377

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER--DQKAL 281
           T  +G  +V+S   +   ++AVV+    S +R  D +AL
Sbjct: 378 TGAAGPCLVSSGELEGRRLIAVVL---DSGDRWADSRAL 413


>gi|251796370|ref|YP_003011101.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           sp. JDR-2]
 gi|247543996|gb|ACT01015.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           sp. JDR-2]
          Length = 393

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 125/263 (47%), Gaps = 27/263 (10%)

Query: 24  IQRNIQLMGKILFLS--IIMISMASELHAKP------KYSSIVIDVNKNQ-MTGFKQDEP 74
           I R ++ +G  L+ +  I   S  + ++A P         S ++DV   + +     D+ 
Sbjct: 2   IGRQLRRIGIALWAASLIWGTSFTASVYAAPNPYHTSANGSALVDVKSGRILYSENGDQS 61

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
              ASLTK+MT  +  E+ +     L+ ++  S  A  +  S +YL+     T    +  
Sbjct: 62  MRIASLTKIMTAIVAIEHGK-----LSERVKTSSRAVGKEGSSIYLQLGEEMTLLNMLYG 116

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           L+ RS ND +TA  E + GSE+ F  LM+ KA+ +G+ +T +KN  GL  +   ++A D 
Sbjct: 117 LMLRSGNDAATAIAEHVGGSEEGFVHLMNEKAEMLGLTHTQFKNPHGLDVEGHYSSANDL 176

Query: 195 AILGILLRKNFPQYYKYFSIR---------KFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
           A L     +N P + +  S +         K++Y     TN NK+L      DG+KTGYT
Sbjct: 177 AKLTAYALRN-PVFAEIVSTKVKSVPNPHEKWQYS---WTNKNKMLAMYEGADGVKTGYT 232

Query: 246 RNSGFNIVTSLRYKDDPIVAVVM 268
           + +   +V+S       + AV +
Sbjct: 233 KKALRCLVSSATRDGQQLAAVTL 255


>gi|300854319|ref|YP_003779303.1| D-alanyl-D-alanine carboxypeptidase-like protein [Clostridium
           ljungdahlii DSM 13528]
 gi|300434434|gb|ADK14201.1| D-alanyl-D-alanine carboxypeptidase related protein [Clostridium
           ljungdahlii DSM 13528]
          Length = 367

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 10/206 (4%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK+MT+ +  +Y +     L+ ++ +S  +A    S +  K+    T ++ +  L+ 
Sbjct: 66  ASTTKIMTVLVAIKYGK-----LDEKVQISSRSAGIRGSVVGYKKGESITLKELLYGLML 120

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           RS ND + A  E +SGS ++F  LM+  A +IG+ NT +K   GL  +   TTA D A+L
Sbjct: 121 RSGNDAAIAISEGVSGSVEEFVKLMNEYASEIGVINTHFKTPHGLDKEEHYTTAYDLAVL 180

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
              + KN   + +  S +         T    N NK+L K+ + +G+KTGYT  +G  +V
Sbjct: 181 -TSIAKNNTLFNEIVSSKDVDGPQNGFTRSYHNINKILWKIPDANGVKTGYTGKAGKCLV 239

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQK 279
           TS + + + ++ VV+  P   E  +K
Sbjct: 240 TSTKVQGNDVIIVVLNCPRRWEETEK 265


>gi|194016923|ref|ZP_03055536.1| D-alanyl-D-alanine carboxypeptidase DacB (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 5*)
           (PBP-5*) [Bacillus pumilus ATCC 7061]
 gi|194011529|gb|EDW21098.1| D-alanyl-D-alanine carboxypeptidase DacB (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 5*)
           (PBP-5*) [Bacillus pumilus ATCC 7061]
          Length = 383

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 129/268 (48%), Gaps = 13/268 (4%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+ID    + + G  + E R  AS+TK+MT  +  E   S K+     + VSK A   
Sbjct: 36  SAILIDGQSGRVLFGKDEHEKRRIASITKIMTAVLAIE---SGKM--KDTVKVSKRAIQA 90

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S +YLKE    + E     L+ RS ND + A  E + GS + F  +M+ KA ++GM+N
Sbjct: 91  EGSSIYLKEGQKVSLEDLTYGLMLRSGNDAAVAIAEHVGGSLEGFIFMMNQKASELGMEN 150

Query: 174 TIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR--NRIITNHNKL 230
           T ++N  GL D K+  ++A D AIL     ++  QY K      ++ +       N NKL
Sbjct: 151 TNFQNPHGLDDHKHHYSSAYDMAILTKYAMEH-KQYQKIAGTTFYKAKTMEGYWKNKNKL 209

Query: 231 LNKMHNID-GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           +  ++    G KTGYT+ +   +V++    D  ++AV +  P   +      E   +F  
Sbjct: 210 VTGLYKYSTGGKTGYTKLAKRTLVSTAAKGDAALIAVTINAPDDWKDHISMFEY--AFDH 267

Query: 290 KKTLKHQQTHRKDNLSSTSLKKSLMIKK 317
            KT    +  R  +L  T  +K   IK+
Sbjct: 268 YKTYVLAEKGRLASLKGTFYEKKAFIKR 295


>gi|171777393|ref|ZP_02919182.1| hypothetical protein STRINF_00009 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283273|gb|EDT48697.1| hypothetical protein STRINF_00009 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 410

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 126/271 (46%), Gaps = 25/271 (9%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTE 129
           P   AS+TK++T+Y+ ++ +    L  +T++P+S  A    A  + S + ++ + Y T E
Sbjct: 51  PDGIASMTKILTVYLTYKEIDKGNLSWDTKVPISDYAYDLTANSDASNVPMEAREY-TVE 109

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH------ 183
           Q + A +  SAN  + A  E I G+E KF  +M  + ++ G+ +    NASGL+      
Sbjct: 110 QLVNAAMVASANSAAIALAEKIGGTESKFVDMMQTQLQEWGINDAKLFNASGLNNSYLGD 169

Query: 184 ---------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
                    D+N + +ARD AI+   L   +P   K  +     +    +  +N +L  M
Sbjct: 170 NIYPGSSSTDENTL-SARDVAIIAQHLITEYPDVLKISNQTTADFEGSTMNTYNYMLKGM 228

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                 +DG+KTG T  +G + V +       I++VVM     QE +    E   + L+ 
Sbjct: 229 PYERDGVDGLKTGTTELAGASFVATSTENGMRIISVVMNADGWQENEFARFEATNALLDY 288

Query: 291 KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRT 321
               ++ T   D   ST   K+ +I   ++T
Sbjct: 289 VKSNYEMTTLVDAGESTKNSKAKVIDGKEKT 319


>gi|153953884|ref|YP_001394649.1| D-alanyl-D-alanine carboxypeptidase-related protein [Clostridium
           kluyveri DSM 555]
 gi|219854499|ref|YP_002471621.1| hypothetical protein CKR_1156 [Clostridium kluyveri NBRC 12016]
 gi|146346765|gb|EDK33301.1| D-alanyl-D-alanine carboxypeptidase-related protein [Clostridium
           kluyveri DSM 555]
 gi|219568223|dbj|BAH06207.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 398

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 108/211 (51%), Gaps = 10/211 (4%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK+MT  +  +Y       LN +I +S  AA+   S +  K+      ++ +  L+ 
Sbjct: 68  ASTTKIMTALVAMKYGD-----LNKKIDISPKAASVRGSTVGYKKGESILLKELLFGLML 122

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           RS ND + A  E ISGS ++FA LM+  A ++G+ NT ++   GL  +   +TA D A++
Sbjct: 123 RSGNDAAIAIAEGISGSVEEFAKLMNEYAGELGVINTQFQTPHGLDSEGHYSTAYDLALV 182

Query: 198 GILLRKNFPQYYKYFSIRKFRYR----NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
               +K  P + +  S +         +R   N NK+L ++   +G+KTGYT  +G  +V
Sbjct: 183 TSAAKKE-PLFNEIVSSKDVDGEKNKFSRSYHNINKILWQIPEANGVKTGYTGKAGKCLV 241

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           TS+  + + I+ VV+  P   E   K  E +
Sbjct: 242 TSVAIEKNDIIIVVLNSPGRWEETDKIYEYV 272


>gi|220927940|ref|YP_002504849.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           cellulolyticum H10]
 gi|219998268|gb|ACL74869.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           cellulolyticum H10]
          Length = 401

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 110/227 (48%), Gaps = 7/227 (3%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++IV+DV   ++   K    R   AS TK+MT  +  E     +      + VSK AA+ 
Sbjct: 59  AAIVMDVQSGRVLYEKNAYKRSSIASTTKIMTAIVALENGSDGE-----DVIVSKKAASI 113

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S++ LK    +     + AL+ RS ND + A  E + GS + FA +M+ KA +IG  N
Sbjct: 114 WGSRVGLKMGKIYKLGNLLNALMIRSGNDAAIAIAEHVGGSVEAFAEMMNRKAAEIGATN 173

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           T +    GL      +T  D A++     KN  ++ K  S +   +    I N N++L+ 
Sbjct: 174 TNFVTPHGLDAPQHYSTPYDLALITQYALKN-KKFCKIVSTKSSTFEGNPINNTNEMLSL 232

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
               DG+KTGYT  +G  +VTS  +    I++VV+   T   R Q +
Sbjct: 233 YPGADGVKTGYTGQAGRCLVTSATHSGWRIISVVLNCSTRSVRAQSS 279


>gi|302337982|ref|YP_003803188.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635167|gb|ADK80594.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Spirochaeta
           smaragdinae DSM 11293]
          Length = 434

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 119/249 (47%), Gaps = 20/249 (8%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           S+++ID     +   K  DE   PAS+TK+++L++I+  ++  +L ++ +I V   A   
Sbjct: 73  SAVLIDDETGTLLFVKHGDEVIPPASMTKLVSLHLIYREIEEGRLSIDQEIIVPDFADFR 132

Query: 111 -ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            A    S ++L+          +  L   S ND +    + I+GS   +  +M+++ +++
Sbjct: 133 SAPPRSSLMFLQAGQSVRLIDLMRGLALPSGNDAAVLVADLIAGSTPAYVAMMNDEMRRL 192

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF-SIRKFRY-----RNRI 223
           G  +  ++++SG  + N+  TA D A          P+  K   S+  F Y      N +
Sbjct: 193 GFSSIFFEDSSGYSEHNR-ATALDFARFARFYVDTHPESLKELHSLTSFSYPKTENENGV 251

Query: 224 ------IT--NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
                 +T  NHN L+ +   +DG+KTGY   SG+N+  +   +   ++AV+MG P    
Sbjct: 252 KAVYGSVTQPNHNSLVGRHPWVDGLKTGYIDESGYNVALTAETRGRRLIAVLMGGPGENS 311

Query: 276 RDQKALELI 284
           RD     +I
Sbjct: 312 RDGDLYRVI 320


>gi|164686325|ref|ZP_02210355.1| hypothetical protein CLOBAR_02763 [Clostridium bartlettii DSM
           16795]
 gi|164601927|gb|EDQ95392.1| hypothetical protein CLOBAR_02763 [Clostridium bartlettii DSM
           16795]
          Length = 442

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 114/238 (47%), Gaps = 30/238 (12%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
            +VID    ++ G K  D   YPAS TK+ T Y++ + ++    +L+  + +++      
Sbjct: 27  GVVIDYETGKVLGGKNIDSKVYPASTTKIWTAYLVVKNVK----NLDEPVEITEPPGVDG 82

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S +YL+    FT  + +  L+  S+ND +    +++SGS + FA LM+ +AKK G  NT
Sbjct: 83  -SSMYLEVGEIFTVRELLQGLLIHSSNDAAVVLAKYVSGSTQDFAQLMNKEAKKAGALNT 141

Query: 175 IYKNASGLHDKNQITTARDQAILG-----------------ILLRKNFPQYYKYFSIRKF 217
            + N  GL D N  TT  D A+L                  I  ++      K  + R F
Sbjct: 142 HFNNPHGLPDDNHYTTPYDMAMLARKAMSEKVIREIVSTKSISFKQQNTATSKINTSRYF 201

Query: 218 RYRNRIITNHNKLLNKMHNI-------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              N  +T+++K+  +  +I       DGIKTGYT  +G  +++S    D  ++A V 
Sbjct: 202 TNTNLFLTSNDKITYRKQSIPIKYDIVDGIKTGYTDLAGRCLLSSAVKNDMRVIAAVF 259


>gi|85708665|ref|ZP_01039731.1| D-alanyl-D-alanine carboxypeptidase [Erythrobacter sp. NAP1]
 gi|85690199|gb|EAQ30202.1| D-alanyl-D-alanine carboxypeptidase [Erythrobacter sp. NAP1]
          Length = 403

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 6/235 (2%)

Query: 56  SIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ- 113
           ++++DV   Q+   +  + R+ PAS+TK+MTL+  FE ++   L     + +S     + 
Sbjct: 56  ALLVDVTSGQVLYSRNADRRFVPASITKVMTLFHAFELIEEGDLDPRQTLVMSDEVWEEW 115

Query: 114 --NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S +++        +  +  +   SAND S    E  +GS   +   M+ +A+ + M
Sbjct: 116 GGEGSTMWINAGDRVAVDDLLTGIANISANDGSAMLAEGQAGSISAWLDGMNQRARSLEM 175

Query: 172 QNTIYKNASGLHDKNQ-ITTARDQAILGILLRKNFPQ-YYKYFSIRKFRYRNRIITNHNK 229
            N+ +   +G  D+ +  TTA D   L   L    PQ Y +Y     FRY +    N + 
Sbjct: 176 VNSHFGTPNGWPDEGRTFTTASDLVKLAQALISRHPQKYARYIGKPGFRYNDIEQFNRDP 235

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           ++ ++   DGIKTGYT  SG   V S +     +V VV G+     R + A +LI
Sbjct: 236 MIGRVAGADGIKTGYTNESGLGYVGSAKRDGQRLVVVVAGISRGSIRARAARDLI 290


>gi|255528214|ref|ZP_05395035.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           carboxidivorans P7]
 gi|255508087|gb|EET84506.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           carboxidivorans P7]
          Length = 411

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 125/260 (48%), Gaps = 30/260 (11%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-----KQDEPRYPASLTK 82
           I +M  +  LS   +S+ ++  A P   S    V  + +TG+      +D    PAS TK
Sbjct: 6   IFMMSFVFLLS--SVSLKAQAKADPPTVSADSVVLMDAITGYVLYGKNEDSAYPPASTTK 63

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT  +  E     K  L+  + V K     + SK+YL E         +  L+ +S ND
Sbjct: 64  LMTALLTLE-----KCKLDDVVTVGKNPPLVDGSKIYLFEGEQLKVRDLLYGLMLQSGND 118

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E + GS   FA+LM+ +A ++G +++ + N SGL+D+   T+ARD   L +++R
Sbjct: 119 CAEALAEHVGGSIDNFAVLMNKRALELGCRDSHFVNPSGLYDEKHKTSARD---LALIMR 175

Query: 203 K--NFPQYYKYFSIRKFRYR-------NRIITNHNKLLNKMHNI--DGI---KTGYTRNS 248
           +  N P+Y +  S   +           R + N NKL+ K   +  DG    KTGYT  S
Sbjct: 176 ELSNKPEYTQIASTSFYEIPPTNKSAVKRPLWNENKLIQKSSQLYYDGCKGGKTGYTTQS 235

Query: 249 GFNIVT-SLRYKDDPIVAVV 267
             + V+ S R     IVA+V
Sbjct: 236 LHSYVSYSTRNGQRLIVALV 255


>gi|322421006|ref|YP_004200229.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacter sp.
           M18]
 gi|320127393|gb|ADW14953.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacter sp.
           M18]
          Length = 300

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 119/243 (48%), Gaps = 18/243 (7%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           R PASLTKMMT  ++ E     +  L+  + VS++AA +  S++ L+          + A
Sbjct: 55  RAPASLTKMMTALVVME-----RCDLDEVVVVSRSAARETGSRIGLRRGDKVRVRDLLAA 109

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  SAND   A  +  SG++K F + M+ +A+ + ++NT + NA G  +K   + A D 
Sbjct: 110 ALIASANDACRALADHTSGNQKDFVVQMNARARALDLENTHFTNACGHDNKGLYSNAHDL 169

Query: 195 AILGILLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
           A L     +  P++ +  S R  R       R   + N N+L+ +     G+KTG T N+
Sbjct: 170 ARLAERAMQ-LPRFAELVSKRSMRISTVDGKRTYYLRNKNRLIGRYPGAIGVKTGTTPNA 228

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
           G  +V     ++  ++ V+M    SQ R + A  L+ +     + +H  +   ++  STS
Sbjct: 229 GQCLVALAEREERKVLVVIM---HSQNRWRAAPALLDAAFAASSPRHVPS---NDTESTS 282

Query: 309 LKK 311
            ++
Sbjct: 283 ARR 285


>gi|121533591|ref|ZP_01665418.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus
           carboxydivorans Nor1]
 gi|121307582|gb|EAX48497.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus
           carboxydivorans Nor1]
          Length = 384

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 16/224 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++++D    Q+   K    R  PAS TK++T  I  E  +     L+  + VS  AA  
Sbjct: 33  AAVLMDAKTGQVLYDKDMHKRSAPASTTKILTAIIAIESGR-----LDEVVRVSPRAAGT 87

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S + L      T  + +  L+ RS ND + A  E ++GS + FA +M+ +A++IG  N
Sbjct: 88  GGSSMNLYAGQTLTLRELVTGLMLRSGNDAAVAIAEHLAGSVEAFAAVMNKRAQEIGAVN 147

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI---------RKFRYRNRII 224
           + + N  GL      +TA D A L      N P + +  S          R  R R+R +
Sbjct: 148 SHFVNPHGLTAPGHFSTAFDLAWLARYALTN-PVFGQIVSTKETTIEWLDRSGRERDRNL 206

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            N NKLL  +   DG+KTG T  +G  +V S    +  ++AVV+
Sbjct: 207 RNTNKLLWMLEEADGVKTGTTSEAGPCLVASATRGNQRLIAVVL 250


>gi|227509080|ref|ZP_03939129.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227191467|gb|EEI71534.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 421

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 116/247 (46%), Gaps = 24/247 (9%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-- 111
           S+I +D +  Q+   K   +P   AS++K+MT+YI+ + +Q  KL  N Q+ +S   A  
Sbjct: 41  SAIAVDADTGQILYEKNAHQPLAIASISKLMTVYIVRKQIQEGKLSWNDQVKISPAVAKL 100

Query: 112 --TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 + + LK    +     + A +  SAN  + A G+ +SG+ + FA  M+  A+ +
Sbjct: 101 STASGLTNVPLKSGKSYKVRDLVKAALIVSANAAAIALGQKVSGNAQNFADKMTKTARGL 160

Query: 170 GMQNTIYKNASGLHDK--------------NQITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++  + NA+GL +K                + +A+D A+L   L ++FP   K     
Sbjct: 161 GIKDAKFYNAAGLTNKLTGSLMLKKDSPNAENLMSAKDIALLASRLEESFPGLTKITGQT 220

Query: 216 KFRYRNRIITNHNKLLN-----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +  +       HN+LL+     K   ++G+KTG +  +G     S  Y    IV VV+G 
Sbjct: 221 QMTFAGNSYAGHNQLLDDRQIAKGAVVNGLKTGTSDEAGACFAGSATYHGRRIVTVVLGA 280

Query: 271 PTSQERD 277
             +   D
Sbjct: 281 RNNSATD 287


>gi|288871299|ref|ZP_06117136.2| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
 gi|288863963|gb|EFC96261.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
          Length = 465

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 115/244 (47%), Gaps = 25/244 (10%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK---LYLKEKTYFTTEQGI 132
           YPAS+TK+MT  ++ E     K  L+  +  SKTA T   S    L L E    T  Q +
Sbjct: 136 YPASITKLMTALLVAE-----KCSLDDTVTFSKTAVTNLESGAVTLGLVEGDKLTVRQCL 190

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             L+ +SAN+V+    E  +GS   FA +M+ +AK++G  NT + N +GL+D N  TT  
Sbjct: 191 YGLLLKSANEVANGLAEHTAGSISAFADMMNARAKELGCTNTNFVNPNGLNDSNHYTTPH 250

Query: 193 DQAILGILLRKNFPQYYKYFSIRKF------RYRNRIITNHNKLL-----NKMHNIDGIK 241
           D A++     +N     K  S   +      +   R I+  +K+L          + G K
Sbjct: 251 DMALIARAAFQN-ATVCKVASTLSYQIPATQKAAARTISLGHKMLYPNDSRYYQGVIGGK 309

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK----KTLKHQQ 297
           TGYT  +G  +VT        ++AV+M   ++Q  D  AL L   F  K    +T K QQ
Sbjct: 310 TGYTSLAGNTLVTCAERDGVRLIAVIMKSKSTQYTDTSAL-LDYGFALKSGGSQTAKWQQ 368

Query: 298 THRK 301
              K
Sbjct: 369 EGEK 372


>gi|89894346|ref|YP_517833.1| hypothetical protein DSY1600 [Desulfitobacterium hafniense Y51]
 gi|89333794|dbj|BAE83389.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 364

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 101/200 (50%), Gaps = 7/200 (3%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS TK+MT  +  E    + +   ++  +  T  T   +++YL+     + E  + AL+
Sbjct: 3   PASTTKIMTGLLGIELGNPEDIVTASETMLDYT--TVYGTRIYLEPGEQLSLEDMLYALL 60

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             SAND + A  E ISG+   F  LM+ +A  +G++NT +KN SGL+++  +TTA D A 
Sbjct: 61  LNSANDAAVAIAEHISGNTSAFVSLMNQRAADLGLKNTTFKNPSGLNEEGHLTTAHDLAR 120

Query: 197 LGILLRKN--FPQYYKYFSIRKFRYRNRI---ITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +      N  F  Y K  S    R +  +   + N NKLL +   I G+KTGYT  +   
Sbjct: 121 IAQAAYANPVFRDYIKTKSHVIPRAKENVPIEMINENKLLWRDDTITGMKTGYTSVAQNC 180

Query: 252 IVTSLRYKDDPIVAVVMGMP 271
           +V S       ++ V++  P
Sbjct: 181 LVASASRDGRDVIGVILKSP 200


>gi|296132902|ref|YP_003640149.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola sp. JR]
 gi|296031480|gb|ADG82248.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola potens JR]
          Length = 372

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 119/244 (48%), Gaps = 14/244 (5%)

Query: 34  ILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYII 89
           I+F +I ++   + L  +P  S+   +++D N  Q+   K    R P AS TK++T  + 
Sbjct: 8   IIFFTIFLLKANTCLAWQPAVSADAAVLMDANTGQVLYAKNAHKRRPPASTTKILTGILA 67

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            +     +      + VS  AA    S +YL      T ++ I   + +S ND   A  E
Sbjct: 68  LDMGNPAE-----TVVVSPRAAAVGESSIYLSAGEKLTLDELIQGALMKSGNDACAAIAE 122

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQ 207
            I GS + F+ LM+ KAK +G  N+ + N  GL  KN  +TA D A++     +N  F +
Sbjct: 123 HIGGSIEMFSQLMNLKAKMLGAWNSNFINPHGLPAKNHYSTAYDLALIARYAMQNRRFAE 182

Query: 208 YY--KYFSIRKF-RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
               K   I  + +  NR + N NKLL +    DGIKTG T+ +G  +V+S       ++
Sbjct: 183 IVAQKEKEIDWYGQSWNRHLKNTNKLLWRYIWADGIKTGTTKAAGQCLVSSASKDCRKLI 242

Query: 265 AVVM 268
           AVV+
Sbjct: 243 AVVL 246


>gi|227523786|ref|ZP_03953835.1| S11 family D-Ala-D-Ala carboxypeptidase [Lactobacillus hilgardii
           ATCC 8290]
 gi|227089101|gb|EEI24413.1| S11 family D-Ala-D-Ala carboxypeptidase [Lactobacillus hilgardii
           ATCC 8290]
          Length = 442

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 140/299 (46%), Gaps = 44/299 (14%)

Query: 26  RNIQLMGKILFLSIIMISMASELHA-----KPKY-----SSIVIDVNKNQMTGFKQDEPR 75
           R  +LM  IL L+ ++ ++     A     KPKY        V+D    QM   K    +
Sbjct: 20  RLTKLMAVILVLACVIAALVPSATAQAKSKKPKYKFEAKEIYVMDAKSGQMLYQKNSHQK 79

Query: 76  YP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS----KLYLKEKTYFTTEQ 130
            P ASL+K+MTLY+  + +   +L  N ++PVSK     + S       +K+   +T +Q
Sbjct: 80  RPIASLSKLMTLYLTKKAIDQHQLSWNQKVPVSKPLIKMSKSYELGTFKIKKSKQYTVKQ 139

Query: 131 GILALITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
              A +  S+N  + A GE ++G S  KF  LM+ +A+K G+ N  + ++SGL D   +T
Sbjct: 140 LYQAALIASSNSSAIALGELVAGGSNTKFINLMNRQAQKWGI-NAHFVSSSGL-DNTDLT 197

Query: 190 T-----------------ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           T                 A+  + +   +   FP   K+      +  N+++ N N+LL 
Sbjct: 198 TYKLQVPGTGKKAQNMVSAKAISTVAAKVLGEFPSITKWSRKPSMKVGNQVLVNSNRLLK 257

Query: 233 ------KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT---SQERDQKALE 282
                 K  ++DG+KTG+T  +G  +  S  +K   ++A ++   T   S E+  +A+E
Sbjct: 258 GDAFYKKSEHVDGLKTGFTDTAGLCLNVSFWHKGRHLIATIIDSNTIFSSMEKLVRAIE 316


>gi|303238725|ref|ZP_07325258.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio
           cellulolyticus CD2]
 gi|302593844|gb|EFL63559.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio
           cellulolyticus CD2]
          Length = 399

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 113/227 (49%), Gaps = 7/227 (3%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++IVID+   ++   K     R  AS TK+MT  +  E     K  L+ ++ VSK AA+ 
Sbjct: 56  AAIVIDMKSGRVLYEKNAYSTRSIASTTKIMTAIVAIE-----KGKLDNKVKVSKRAASV 110

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S ++LKE    +  + +  L+  S ND + A  E I GS ++FA +M++KA+++G++N
Sbjct: 111 RGSVIHLKEGEELSLRELLYGLMLNSGNDAAIAIAEHIGGSVEEFAQMMNDKARELGLKN 170

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           T +K   GL      +TA + A +      N   + +    +      R +   N++L  
Sbjct: 171 TQFKTPHGLDTPGHYSTAYELAQIARYALGN-STFSQIVGTQSTSITGRSLYTTNEMLGA 229

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
               DG+KTGYT  +G  +V S    +  I++VV+   +   R Q +
Sbjct: 230 YPGADGVKTGYTGQAGRCLVASATRNNMRIISVVLNCHSRSVRAQSS 276


>gi|266622661|ref|ZP_06115596.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
 gi|288865598|gb|EFC97896.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
          Length = 480

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 127/279 (45%), Gaps = 35/279 (12%)

Query: 33  KILFLSIIMISMASELHAKPKY---------SSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           KIL  ++I        +A P +         + +VID++   + G K  D P  PAS+TK
Sbjct: 7   KILCWTLISNCFLMTAYAAPAWPAGPDIQAEAGVVIDMDSGAILGGKAYDTPYPPASITK 66

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T  ++ E+ +     L+  +  S +A     + + +KL + E    + E  + +L+  
Sbjct: 67  LLTALLVLEHSK-----LDEMVTFSNSAVYNVESDSGNKLNVAEGDQLSVEDCLYSLLVH 121

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI-- 196
           S N  + A  E ++GS++ F  +M++KA  +G +++ + N SGL+   Q  TARD A   
Sbjct: 122 SCNQAANALAEHVAGSQEAFVKMMNDKAAALGCKDSHFDNPSGLNGDTQYVTARDMAAIS 181

Query: 197 -----------LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH--NIDGIKTG 243
                      +   L+  FP              N++I N N   ++ +   + G KTG
Sbjct: 182 RAAFAEPDIIRISAALKHTFPPTINNPEGLTIYAENKLILNTNDSSSQYYYPPVKGGKTG 241

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVM-GMPTSQERDQKAL 281
           Y   +G  +VT        +++V++ G P     D KAL
Sbjct: 242 YLLKAGNTLVTYAEKDGKRLISVILKGSPGQYYLDGKAL 280


>gi|256846732|ref|ZP_05552188.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp.
           3_1_36A2]
 gi|256717952|gb|EEU31509.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp.
           3_1_36A2]
          Length = 425

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 125/257 (48%), Gaps = 10/257 (3%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           + ++++   K  +   K  +  YP AS+TKMM+L + F+ + +  + LN  + +SK    
Sbjct: 170 FRAVIVGDTKGNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGNISLNDSVRISKNPLK 229

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGM 171
              S + LK    F  E  I A    SAN+ + A  E++  GS   F   M+ K K++G+
Sbjct: 230 YGGSGIALKAGQMFVLEDLIKASAVYSANNATYAIAEYVGKGSVFSFVTKMNRKLKELGL 289

Query: 172 QNTI-YKNASGLHDKNQITTARDQAILGIL-LRKNFPQYYKYFSIRKFR----YRNRI-I 224
           QN I Y   +GL  +       +    GI  L     +Y KY  I   +    +  +I I
Sbjct: 290 QNEIRYHTPAGLPTRVTKQPMDEGTARGIYKLSIEALKYKKYIEIAGIKSTKIHNGKISI 349

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            N N L+ + + + GIKTG+ + + +NI  + +++D  ++ VVMG  T + RD+  L ++
Sbjct: 350 RNRNHLIGE-NGVYGIKTGFHKEAKYNIAVASKFQDTDVIIVVMGGETYKTRDKIVLSVL 408

Query: 285 TSFLEKKTLKHQQTHRK 301
                  T+K+    RK
Sbjct: 409 DILNNNYTVKNGLIKRK 425


>gi|312793461|ref|YP_004026384.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180601|gb|ADQ40771.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 387

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 120/257 (46%), Gaps = 20/257 (7%)

Query: 42  ISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKK 97
           I  A+E    P+ SS   I I+    ++   K  + + P AS TK+MT  ++ E      
Sbjct: 34  ICYANEKKNLPQISSKSAIAIEWVTRKILFEKNKDLKLPMASTTKIMTAILVLE-----N 88

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
             +N +I +   A     S +YL++         +  L+  S ND + A     +G  K+
Sbjct: 89  CDVNKEIEIPPQAVGVPGSSMYLEKGEKLKIIDLLYGLMLSSGNDAAVALAIATAGDVKR 148

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKY---- 211
           F  LM+ KAK++G+ NT++ +  GL      TTA D A L     +N  F Q  K     
Sbjct: 149 FVNLMNKKAKELGLSNTVFSSPHGLEQGEHYTTAHDLAKLAAYAMRNPIFRQIVKTTEKE 208

Query: 212 --FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
             ++ R +   NRI+ N NK+L      +G+KTG+T+ +G  +VTS    D  ++ VV+ 
Sbjct: 209 VPWTTRPY---NRILKNKNKMLRLYPGAEGVKTGFTKKAGRCLVTSACRDDFRVICVVLN 265

Query: 270 MPTSQERDQKALELITS 286
            P      +K L+   S
Sbjct: 266 APNMWNDTRKILDYCYS 282


>gi|310644848|ref|YP_003949607.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Paenibacillus
           polymyxa SC2]
 gi|309249799|gb|ADO59366.1| Peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           polymyxa SC2]
          Length = 313

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 132/268 (49%), Gaps = 26/268 (9%)

Query: 35  LFLSIIMISMASELH-AKPKY---SSIVIDVNKNQM-TGFKQDEPRYPASLTKMMTLYII 89
           + + +I I++   L   KP     +++++D++  ++      D+P   A+++K+MT  ++
Sbjct: 15  VLIILIFITLGPRLLIGKPNVDADAAVLMDMHTGELLMDVNGDKPMPSANMSKLMTELLV 74

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            E +++ +L  N ++ +S+ A+T     L L+     T  +   +++  SAND + A  E
Sbjct: 75  LEDIRTGRLGWNDEVRISRYASTVGGVNLSLRYGERMTVSELFQSMVVYSANDAAVALAE 134

Query: 150 FISGSEKKFAILMSNKAKKIGMQ-NTIYKNASGL--------HDKN----QITTARDQAI 196
             SG+E  F   M+ KA +IG+  ++ + NASG         H K+       TA D A 
Sbjct: 135 RSSGNEYAFVKRMNEKAAQIGLSPDSRFSNASGAGQSELGPNHPKDIRGETKMTASDTAK 194

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNR--IITNHNKLLNKM------HNIDGIKTGYTRNS 248
           L   L  + P+  +  S  +   +++   I+N N +L  +         DG+K GYT ++
Sbjct: 195 LASYLITSHPEILRTSSRTQMELKDKGIYISNTNWMLPSLAGPYSYAGTDGLKAGYTSDA 254

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           G+    +       +VAVV+G P+ +ER
Sbjct: 255 GYCFTGTAEQHGKRLVAVVLGAPSKEER 282


>gi|157691298|ref|YP_001485760.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus
           SAFR-032]
 gi|157680056|gb|ABV61200.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus
           SAFR-032]
          Length = 441

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 134/276 (48%), Gaps = 36/276 (13%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKY--------SSIVIDVNKNQMTGFKQDEPRYP-AS 79
           QLM  IL L++I+ +      AK           ++I+I+ +  ++   K  E R P AS
Sbjct: 8   QLMVSILALALIVTAFTPMSKAKAAEDPFNVNAKAAILIEASTGKILYSKNAEQRLPIAS 67

Query: 80  LTKMMTLYIIFEYLQSKKLHLN-TQIP---VSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           + KMMT Y++ E +   K+  + T  P   V + +  ++ S + L++   +T ++   A 
Sbjct: 68  MAKMMTEYLLLEAIAEGKVKWDQTYTPDDYVYEISQDRSLSNVPLRKDGSYTVKELYQAT 127

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH------------ 183
              SAN  +    E I+GSE KF   M+ KAK++G+ N  + NA+GL             
Sbjct: 128 AIYSANAAAIGLAEVIAGSESKFVEKMNAKAKELGLTNYKFVNATGLENKDLHGKQPKGT 187

Query: 184 --DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHN----KLLN 232
             D+    +A+D A+L   L K+ P+  +  SI K ++R        + N N     L+ 
Sbjct: 188 GTDEESEVSAKDMALLAQHLIKDHPEILETSSIAKTKFREGTDDEMDMPNWNFMLKGLVK 247

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +   +DG+KTG T ++G +   + +  D  ++AV++
Sbjct: 248 EYEGVDGLKTGSTDSAGSSFTGTAKQGDMRVIAVIL 283


>gi|160915010|ref|ZP_02077223.1| hypothetical protein EUBDOL_01017 [Eubacterium dolichum DSM 3991]
 gi|158432809|gb|EDP11098.1| hypothetical protein EUBDOL_01017 [Eubacterium dolichum DSM 3991]
          Length = 330

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 104/202 (51%), Gaps = 21/202 (10%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS++K+MT  I  E     K +L  +   S+   T + S +YL++    + E  +  L+ 
Sbjct: 48  ASISKIMTAMIAIE-----KGNLQDRWQCSEAIETVDGSMIYLQKDQMVSLESLLYGLML 102

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--QITTARDQA 195
           RS ND +    E + G+E+ F  +M+ KAK+IGM  T+++N +GL +K+   ++TA D A
Sbjct: 103 RSGNDAAVEIAEHVGGNEENFVAMMNEKAKEIGMSRTLFRNPTGLDEKDGGNVSTAYDMA 162

Query: 196 ILGILLRKN-------FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
           +L     KN         +YY   S   +R++N+     N+LL         KTG+T+ +
Sbjct: 163 LLMSYALKNRTFRKIAGTKYYT--SEWNYRWKNK-----NRLLFSYDKSTAGKTGFTKQA 215

Query: 249 GFNIVTSLRYKDDPIVAVVMGM 270
           G  +VTS + K    + V + M
Sbjct: 216 GRTLVTSAKNKQLESIVVTLDM 237


>gi|168186274|ref|ZP_02620909.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum C str.
           Eklund]
 gi|169295810|gb|EDS77943.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum C str.
           Eklund]
          Length = 375

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 135/271 (49%), Gaps = 26/271 (9%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKYSSIVIDV-------NKNQMTGF-KQDEPRYP- 77
           NI L+  I F+  +          +PK  SI +D        +K++   + K  E   P 
Sbjct: 12  NICLLFNIAFVPFVE-------AVEPKNKSIYVDARCAIAMDSKSKCVLYEKNSEMLVPI 64

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK+MT  +  +Y      +L+ +  VS  AA+   SK+  K+    + ++ +  L+ 
Sbjct: 65  ASTTKIMTTLVALKYG-----NLDRKFEVSPKAASIRGSKVGYKKGEQISLKELLYGLML 119

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           RS ND +    E +SGS +KF  LM+  A +IG  N+ +++  GL  +N  +TA D A +
Sbjct: 120 RSGNDAAITIAEGMSGSVEKFCELMNEYAIEIGAFNSHFESPHGLDSQNHYSTAYDLARI 179

Query: 198 GILLRKN--FPQY--YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
               ++N  F +    K    +KF +  R   N NK+L ++ N +G+KTGYT  +G  +V
Sbjct: 180 TAKAKENKLFNEIVGVKDVDEKKFGF-TRSYHNINKILYQIPNANGVKTGYTGGAGKCLV 238

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           TS++  DD ++ VV+      +  +K  + +
Sbjct: 239 TSVKENDDDVIIVVLNCTPRWKETKKIYDFV 269


>gi|227511580|ref|ZP_03941629.1| possible S11 family D-Ala-D-Ala carboxypeptidase [Lactobacillus
           buchneri ATCC 11577]
 gi|227085225|gb|EEI20537.1| possible S11 family D-Ala-D-Ala carboxypeptidase [Lactobacillus
           buchneri ATCC 11577]
          Length = 442

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 140/299 (46%), Gaps = 44/299 (14%)

Query: 26  RNIQLMGKILFLSIIMISMASELHA-----KPKY-----SSIVIDVNKNQMTGFKQDEPR 75
           R  +LM  IL L+ ++ ++     A     KPKY        V+D    QM   K    +
Sbjct: 20  RLTKLMAVILVLACVIAALVPSATAQAKSKKPKYKFEAKEIYVMDAKSGQMLYQKNSHQK 79

Query: 76  YP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS----KLYLKEKTYFTTEQ 130
            P ASL+K+MTLY+  + +   +L  N ++PVSK     + S       +K+   +T +Q
Sbjct: 80  RPIASLSKLMTLYLTKKAIDQHQLSWNQKVPVSKPLIKMSKSYELGTFKIKKSKQYTVKQ 139

Query: 131 GILALITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
              A +  S+N  + A GE ++G S  KF  LM+ +A+K G+ +  + ++SGL D   +T
Sbjct: 140 LYQAALIASSNSSAIALGELVAGGSNTKFINLMNRQAQKWGI-DAHFVSSSGL-DNTDLT 197

Query: 190 T-----------------ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           T                 A+  + +   +   FP   K+      +  N+++ N N+LL 
Sbjct: 198 TYKLQVPGTGKKAQNMVSAKAISTVAAKVLGEFPSITKWSRKPSMKVGNQVLVNSNRLLK 257

Query: 233 ------KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT---SQERDQKALE 282
                 K  ++DG+KTG+T  +G  +  S  +K   ++A ++   T   S E+  +A+E
Sbjct: 258 GDAFYKKSEHVDGLKTGFTDTAGLCLTVSFWHKGRHLIATIIDSNTIFSSMEKLVRAIE 316


>gi|227892889|ref|ZP_04010694.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus ultunensis DSM
           16047]
 gi|227865295|gb|EEJ72716.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus ultunensis DSM
           16047]
          Length = 432

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 122/252 (48%), Gaps = 32/252 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKT 109
           S+I ID N  Q+   K  +   P AS+TK++T+Y+  + +++KKL  + ++    P+ K 
Sbjct: 50  SAIAIDSNSGQILYAKNADKTLPIASMTKLVTVYLTLQAIKNKKLSWDQKVKPTAPIVKV 109

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A     S + LK    +T +Q   A +  SAN  +   G+ I+GS+K F   M  + KK 
Sbjct: 110 ANNTEYSNVPLKMGHSYTIKQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRQQVKKW 169

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++     A GL + N                 +A+D AI+G  L K+FP+      + 
Sbjct: 170 GIEDAKIYTACGLPNGNLGKDAYPGINKNAENTMSAKDMAIIGQNLIKDFPEVLNTTKLA 229

Query: 216 KFRYRNRI----ITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              +++      + N N +L      +K + +DG+KTG T  +G   + ++ +    ++ 
Sbjct: 230 HLDFKDNGKTTKMANFNWMLKGLSQYDKAYPVDGLKTGTTDAAGACFIGTVEHSGARLIT 289

Query: 266 VVMGMPTSQERD 277
           VVMG   ++ RD
Sbjct: 290 VVMG---ARHRD 298


>gi|154498460|ref|ZP_02036838.1| hypothetical protein BACCAP_02449 [Bacteroides capillosus ATCC
           29799]
 gi|150272528|gb|EDM99713.1| hypothetical protein BACCAP_02449 [Bacteroides capillosus ATCC
           29799]
          Length = 454

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 115/267 (43%), Gaps = 42/267 (15%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT---- 109
           S+I++D    + +      E  YPAS+TK+MT  +  E +   +L L+ QI VS      
Sbjct: 40  SAILVDTTYGEILYEHNSHERTYPASITKVMTGLLTIEAIDRGELSLDQQITVSSNVNDG 99

Query: 110 ----AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
               A+TQN     LK     T +  +   +  SAN+      E ++GS   F  LM+ +
Sbjct: 100 MMSGASTQN-----LKSGEVLTLKDVLACALIPSANEACNVLAETVAGSIDAFVELMNQR 154

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF------------- 212
           A ++G ++T + N  GLHD+N  TTA D     I L  N    +  F             
Sbjct: 155 AAELGCEDTHFMNPHGLHDENHYTTAYD-----IYLFCNEAMKHDIFRELVTSMNYTVPA 209

Query: 213 ----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 R F   N +IT+            GIKTGYT  +G+ + ++    D  ++AVV 
Sbjct: 210 TNMSEERTFWDTNALITSWKYKGYTYEYCTGIKTGYTPEAGYCLASAATKGDRSLIAVVT 269

Query: 269 GMPTSQERDQKAL--ELITSFLEKKTL 293
           G     ER   A   E  T F E K L
Sbjct: 270 GC----ERTPGATGSEGYTHFSESKKL 292


>gi|227511987|ref|ZP_03942036.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus
           buchneri ATCC 11577]
 gi|227084795|gb|EEI20107.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus
           buchneri ATCC 11577]
          Length = 421

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 116/247 (46%), Gaps = 24/247 (9%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-- 111
           S+I +D +  Q+   K   +P   AS++K+MT+YI+ + +Q  KL  N Q+ +S   A  
Sbjct: 41  SAIAVDADTGQILYEKNAHQPLAIASISKLMTVYIVQKQIQEGKLSWNDQVKISPAVAKL 100

Query: 112 --TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 + + LK    +     + A +  SAN  + A G+ +SG+ + FA  M+  A+ +
Sbjct: 101 STASGLTNVPLKSGKSYKVRDLVKAALIVSANAAAIALGQKVSGNAQNFADKMTKTARGL 160

Query: 170 GMQNTIYKNASGLHDK--------------NQITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++  + NA+GL +K                + +A+D A+L   L ++FP   K     
Sbjct: 161 GIKDAKFYNAAGLTNKLTGSLMLKKDSPNAENLMSAKDIALLASRLEESFPGLTKITRQT 220

Query: 216 KFRYRNRIITNHNKLLN-----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +  +       HN+LL+     K   ++G+KTG +  +G     S  Y    IV VV+G 
Sbjct: 221 QMNFSGNSYAGHNQLLDDRQIAKGAVVNGLKTGTSDEAGACFAGSATYHGRRIVTVVLGA 280

Query: 271 PTSQERD 277
             +   D
Sbjct: 281 RNNSATD 287


>gi|126700114|ref|YP_001089011.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
           penicillin-binding protein) [Clostridium difficile 630]
 gi|255101659|ref|ZP_05330636.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
           penicillin-binding protein) [Clostridium difficile
           QCD-63q42]
 gi|255307527|ref|ZP_05351698.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
           penicillin-binding protein) [Clostridium difficile ATCC
           43255]
 gi|115251551|emb|CAJ69384.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
           penicillin-binding protein) [Clostridium difficile]
          Length = 429

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 101/201 (50%), Gaps = 26/201 (12%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPAS TK+ T  ++ + ++     LN  I + K     + S +YLK    FT +Q + AL
Sbjct: 59  YPASTTKVWTACLVLKEVKD----LNQVIEI-KDLPQIDGSSMYLKNGESFTVKQLLDAL 113

Query: 136 ITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +  SAND +     ++ G   +KF  LM+++AKKIG  NT + N  GL D N  TTA D 
Sbjct: 114 LVHSANDAAFVLARYVGGGNVQKFIDLMNSEAKKIGATNTHFNNPHGLPDPNHYTTAHDM 173

Query: 195 AILGILLRKN--FPQYYKYFSI-----------RKFRYRNRIITNHNKLLNKMHNI---- 237
           A++      N  F Q  K  S+           R F   N+ +T+H+K+  K   I    
Sbjct: 174 ALIAREAMNNDTFRQIVKTKSLKFEATKAYPYERYFVNTNKFLTSHDKITYKGQPINIKY 233

Query: 238 ---DGIKTGYTRNSGFNIVTS 255
              DGIKTGYT  +G  +++S
Sbjct: 234 DIVDGIKTGYTDAAGKCLLSS 254


>gi|256752163|ref|ZP_05493029.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256748977|gb|EEU62015.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 421

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 121/253 (47%), Gaps = 26/253 (10%)

Query: 35  LFLSIIMIS-MASELHAKPKY---SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYII 89
           LF+ ++ I+ + + +   P+    +++++D    Q+   K    R YPAS TK++T  I 
Sbjct: 11  LFILVVQITPVYANVPPPPEIVGPTAVLMDFTTGQVLYDKNMHKRMYPASTTKILTAIIA 70

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            E     K +LN  +  S      + + ++L      T EQ + A++ +SAND + A  E
Sbjct: 71  IE-----KGNLNDIVTASNNVTKIDGNSIFLSPGEQLTLEQLLYAIMLQSANDAAIAIAE 125

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN----- 204
            I GS + FA +M+ KAK+IG  ++ + N +GL D N  +T  D A++     +N     
Sbjct: 126 HIGGSVENFAKMMNEKAKEIGAYDSHFVNPNGLPDDNHYSTPYDMALIARYAMQNPEFRK 185

Query: 205 --------FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
                    P   K+  +R     NR+I   +    +    DG+KTGYT  +G  +  S 
Sbjct: 186 IVTTIHYQIPPTNKFDKVRDLWLSNRLIKPSSF---RYEGADGVKTGYTVAAGQVLAASA 242

Query: 257 RYKDDPIVAVVMG 269
                 +++V+MG
Sbjct: 243 TRDGRRLISVIMG 255


>gi|327440835|dbj|BAK17200.1| D-alanyl-D-alanine carboxypeptidase [Solibacillus silvestris
           StLB046]
          Length = 324

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 133/271 (49%), Gaps = 23/271 (8%)

Query: 33  KILFLSIIM----ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLY 87
           K  F+SI++    +S +S++ A    S +VID    +      +  R P ASLTK+ T  
Sbjct: 2   KKWFVSIVVMFVFLSGSSQIQAASN-SYVVIDAENGRTLMGVNEHARLPIASLTKIWTAL 60

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           ++ E  +     L  ++ +SK A+    S +YL E   +T +  +  L+ +S ND +TA 
Sbjct: 61  VVLENSE-----LTDEVVISKEASLVEGSSIYLLENETYTIDYLLHGLMMQSGNDAATAL 115

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA-ILGILLRKNFP 206
            E + GS + F  LM+ KA+   +  T + N +GLH++  +++A + A +L I +    P
Sbjct: 116 AEHVGGSVEGFVQLMNEKAELYQLHETTFTNPTGLHNEAHLSSAYNTAKMLQIAMMN--P 173

Query: 207 QYYKYFSIRKF----RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           ++ K  S + F    ++RN+    H  +  K+  I G KTGYT+ +G  + T    +   
Sbjct: 174 EFRKIASTQNFSDGRQWRNK----HRLMHEKIGAIAG-KTGYTKVAGRTLATFFEREQKS 228

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTL 293
            V V +         +   + I +  E++T+
Sbjct: 229 FVVVTINEGNDWNIHRNLADFIDNNFEQQTI 259


>gi|332981601|ref|YP_004463042.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis
           50-1 BON]
 gi|332699279|gb|AEE96220.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis
           50-1 BON]
          Length = 439

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 113/242 (46%), Gaps = 22/242 (9%)

Query: 57  IVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           I+ID    N +     D+  YPAS+TK++T  I  E     + +L   + + + A+   P
Sbjct: 53  ILIDAKTGNALYSINPDQKAYPASITKILTAAIALE-----QGNLKDVVTIDEEASLGIP 107

Query: 116 ---SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S + + +   FT EQ +  L+  S ND + A  + ISG+  +F  LM+ KAK+ G +
Sbjct: 108 AGSSAIVMDKGEQFTLEQLLYGLMLISGNDAAVAIAKHISGTTDEFVNLMNQKAKEWGAK 167

Query: 173 NTIYKNASGLHDKNQITTARDQAILG-----ILLRKNFPQYYKYFSIRK-FRYRNRIITN 226
           N+ + N  G H+ N  TTA D A++      I   ++      Y  I K  R   R   N
Sbjct: 168 NSHFANPHGFHNDNHYTTAYDMAMIARHAMTIPKFRDIVSTTLYLDIPKTLRGDQRRWDN 227

Query: 227 HNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS--QERDQK 279
            N  +            GIKTGYT  +   +V S ++    ++AV+MG P+     +D  
Sbjct: 228 INFFVQPNSKYYYKGATGIKTGYTNQAHHTLVASAQHNGTELIAVLMGEPSKPVAWKDAA 287

Query: 280 AL 281
           AL
Sbjct: 288 AL 289


>gi|227508596|ref|ZP_03938645.1| S11 family D-Ala-D-Ala carboxypeptidase [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227191928|gb|EEI71995.1| S11 family D-Ala-D-Ala carboxypeptidase [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 442

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 139/299 (46%), Gaps = 44/299 (14%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSI----------VIDVNKNQMTGFKQDEPR 75
           R  +LM  IL L+ ++ ++     A+ K   +          V+D    QM   K  + R
Sbjct: 20  RLTKLMAVILVLTCVIAALVPSATAQAKSKKLKYKFEAKEIYVMDAKSGQMLYQKNSDQR 79

Query: 76  YP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS----KLYLKEKTYFTTEQ 130
            P ASL+K+MTLY+  + +   +L  N ++PVSK     + S       +K    +T +Q
Sbjct: 80  RPIASLSKLMTLYLTKKAIDQHQLSWNQKVPVSKPLIKMSKSYELGTFKIKRSKQYTVKQ 139

Query: 131 GILALITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
              A +  S+N  + A GE ++G S  KF  LM+ +A+K G+ +  + ++SGL D   +T
Sbjct: 140 LYQAALIASSNSSAIALGELVAGGSNTKFINLMNRQAQKWGI-DAHFVSSSGL-DNTDLT 197

Query: 190 T-----------------ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           T                 A+  + +   +   FP   K+      +  N+++ N N+LL 
Sbjct: 198 TYKLQVPGTGKKAQNMVSAKAISTVAAKVLGEFPSITKWSRKPSMKVGNQVLVNSNRLLK 257

Query: 233 ------KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT---SQERDQKALE 282
                 K  ++DG+KTG+T  +G  +  S  +K   ++A ++   T   S E+  +A+E
Sbjct: 258 GDAFYKKSEHVDGLKTGFTDTAGLCLTVSFWHKGRHLIATIIDSNTIFSSMEKLVRAIE 316


>gi|294784444|ref|ZP_06749735.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp. 3_1_27]
 gi|294488016|gb|EFG35371.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp. 3_1_27]
          Length = 425

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 125/257 (48%), Gaps = 10/257 (3%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           + ++++   K  +   K  +  YP AS+TKMM+L + F+ + +  + LN  + +SK    
Sbjct: 170 FRAVIVGDTKGNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGNISLNDSVRISKNPLK 229

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGM 171
              S + LK    F  E  I A    SAN+ + A  E++  GS   F   M+ K K++G+
Sbjct: 230 YGGSGIALKVGQMFVLEDLIKASAVYSANNATYAIAEYVGKGSVFSFVTKMNRKLKELGL 289

Query: 172 QNTI-YKNASGLHDKNQITTARDQAILGIL-LRKNFPQYYKYFSIRKFR----YRNRI-I 224
           QN I Y   +GL  +       +    GI  L     +Y KY  I   +    +  +I I
Sbjct: 290 QNEIRYHTPAGLPTRVTKQPMDEGTARGIYKLSIEALKYKKYIEIAGIKSTKIHNGKISI 349

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            N N L+ + + + GIKTG+ + + +NI  + +++D  ++ VVMG  T + RD+  L ++
Sbjct: 350 RNRNHLIGE-NGVYGIKTGFHKEAKYNIAVASKFQDTDVIIVVMGGETYKTRDKIVLSVL 408

Query: 285 TSFLEKKTLKHQQTHRK 301
                  T+K+    RK
Sbjct: 409 DILNNNYTVKNGLIKRK 425


>gi|299538496|ref|ZP_07051779.1| D-alanyl-D-alanine carboxypeptidase [Lysinibacillus fusiformis ZC1]
 gi|298726083|gb|EFI66675.1| D-alanyl-D-alanine carboxypeptidase [Lysinibacillus fusiformis ZC1]
          Length = 305

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 116/241 (48%), Gaps = 18/241 (7%)

Query: 54  YSS--IVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIP--VSK 108
           YSS  I++++++NQ+   K+ E + YPASLTKMMT+ +  E  Q   L     +P  + +
Sbjct: 54  YSSNAILVNLDENQIVLDKKSEEKIYPASLTKMMTVLVAIE--QISNLQEEIILPKHIFR 111

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
               +N S          T E  +   +  S  + S    E+++GSE+ F  LM+ KA++
Sbjct: 112 DLLEENASVAGFLPNEKVTVEDLLYGSMLPSGAEASLGLAEYVAGSERGFVKLMNEKAQQ 171

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAIL--GILLRKNFPQYY--KYFSIRKFRYRNRII 224
           +GM+NT + N +GLH  +  TT +D ++L    L   +F   Y  + +SI+        I
Sbjct: 172 LGMKNTHFVNTTGLHHSDHYTTVKDMSLLLQYALTNDDFRNVYTAERYSIKSTNLHPEGI 231

Query: 225 TNHNKLLNKM-------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           T  +++   M         I G KTGYT ++G  + +         V V +G   S   +
Sbjct: 232 TFTSRMFQHMTSSALPGGEILGGKTGYTEDAGLCLASLALINGQEYVLVTVGADGSPRTE 291

Query: 278 Q 278
           Q
Sbjct: 292 Q 292


>gi|167037830|ref|YP_001665408.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|300914766|ref|ZP_07132082.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X561]
 gi|307724000|ref|YP_003903751.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X513]
 gi|320116247|ref|YP_004186406.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166856664|gb|ABY95072.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|300889701|gb|EFK84847.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X561]
 gi|307581061|gb|ADN54460.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X513]
 gi|319929338|gb|ADV80023.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 421

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 121/253 (47%), Gaps = 26/253 (10%)

Query: 35  LFLSIIMIS-MASELHAKPKY---SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYII 89
           LF+ ++ I+ + + +   P+    +++++D    Q+   K    R YPAS TK++T  I 
Sbjct: 11  LFILVVQITPVYANVPPPPEIVGPTAVLMDFTTGQVLYDKNMHKRMYPASTTKILTAIIA 70

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            E     K +LN  +  S      + + ++L      T EQ + A++ +SAND + A  E
Sbjct: 71  IE-----KGNLNDIVTASNNVTKIDGNSIFLSPGEQLTLEQLLYAIMLQSANDAAIAIAE 125

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN----- 204
            I GS + FA +M+ KAK+IG  ++ + N +GL D N  +T  D A++     +N     
Sbjct: 126 HIGGSVENFAKMMNEKAKEIGAYDSHFVNPNGLPDDNHYSTPYDMALIARYAMQNPEFRK 185

Query: 205 --------FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
                    P   K+  +R     NR+I   +    +    DG+KTGYT  +G  +  S 
Sbjct: 186 IVTTIHYQIPPTNKFDKVRDLWLSNRLIKPSSF---RYEGADGVKTGYTVAAGQVLAASA 242

Query: 257 RYKDDPIVAVVMG 269
                 +++V+MG
Sbjct: 243 TRDGRRLISVIMG 255


>gi|254976092|ref|ZP_05272564.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
           penicillin-binding protein) [Clostridium difficile
           QCD-66c26]
 gi|255093481|ref|ZP_05322959.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
           penicillin-binding protein) [Clostridium difficile CIP
           107932]
 gi|255315225|ref|ZP_05356808.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
           penicillin-binding protein) [Clostridium difficile
           QCD-76w55]
 gi|255517894|ref|ZP_05385570.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
           penicillin-binding protein) [Clostridium difficile
           QCD-97b34]
 gi|255651009|ref|ZP_05397911.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
           penicillin-binding protein) [Clostridium difficile
           QCD-37x79]
 gi|260684078|ref|YP_003215363.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196]
 gi|260687737|ref|YP_003218871.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291]
 gi|260210241|emb|CBA64492.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
           penicillin-binding protein) [Clostridium difficile
           CD196]
 gi|260213754|emb|CBE05676.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
           penicillin-binding protein) [Clostridium difficile
           R20291]
          Length = 429

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 101/201 (50%), Gaps = 26/201 (12%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPAS TK+ T  ++ + ++     LN  I + K     + S +YLK    FT +Q + AL
Sbjct: 59  YPASTTKVWTACLVLKEVKD----LNQVIEI-KDLPQIDGSSMYLKNGESFTVKQLLDAL 113

Query: 136 ITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +  SAND +     ++ G   +KF  LM+++AKKIG  NT + N  GL D N  TTA D 
Sbjct: 114 LVHSANDAAFVLARYVGGGNVQKFIDLMNSEAKKIGATNTHFNNPHGLPDPNHYTTAHDM 173

Query: 195 AILGILLRKN--FPQYYKYFSI-----------RKFRYRNRIITNHNKLLNKMHNI---- 237
           A++      N  F Q  K  S+           R F   N+ +T+H+K+  K   I    
Sbjct: 174 ALIAREAMNNDTFRQIVKTKSLKFEATKAYPYERYFVNTNKFLTSHDKITYKGQPINIKY 233

Query: 238 ---DGIKTGYTRNSGFNIVTS 255
              DGIKTGYT  +G  +++S
Sbjct: 234 DIVDGIKTGYTDAAGKCLLSS 254


>gi|154686564|ref|YP_001421725.1| DacB [Bacillus amyloliquefaciens FZB42]
 gi|154352415|gb|ABS74494.1| DacB [Bacillus amyloliquefaciens FZB42]
          Length = 383

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 120/237 (50%), Gaps = 16/237 (6%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDE--PRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           +++H   K S+I+ID    ++  F +DE   R  AS+TK+MT  +  E   S K+     
Sbjct: 28  AQIHVSAK-SAIIIDGASGRVL-FAKDEHHKRRIASITKIMTAVLAIE---SGKM--EET 80

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           + VS  A     S +YL+       +  +  L+ RS ND + A  E++ GS   F  +M+
Sbjct: 81  VTVSPNAVKTEGSAIYLQPGQKVKLKDLVYGLMLRSGNDAAAAIAEYVGGSLDGFVFMMN 140

Query: 164 NKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFS---IRKFRY 219
            KA++IGM+NT ++N  GL D +N  +TA D A+L     K   + Y+  S   + K   
Sbjct: 141 KKAEQIGMENTKFQNPHGLDDHENLYSTAYDMALLTKYAMK--IKEYRTVSGTKVYKAET 198

Query: 220 RNRIITNHNKLLNKMHNID-GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
            +R+  N NKLL  ++    G KTGYT+ +   +V++       ++AV +  P   +
Sbjct: 199 MDRVWKNKNKLLTGLYRYSTGGKTGYTKIAKRTLVSTASKDGTDLIAVTINDPDDWD 255


>gi|311068836|ref|YP_003973759.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942]
 gi|310869353|gb|ADP32828.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942]
          Length = 383

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 115/236 (48%), Gaps = 13/236 (5%)

Query: 55  SSIVIDVNKNQMTGFKQDE--PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S+IVID    ++  F +DE   R  AS+TK+MT  +  E   S K+     + VS  A  
Sbjct: 36  SAIVIDGASGRVL-FAKDEHEKRRIASITKIMTAVLAIE---SGKME--ETVTVSANAVR 89

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S +YLKE      +  +  L+ RS ND + A  E + GS   F  +M+ KA++IGM+
Sbjct: 90  TEGSAIYLKEGQKVKLKDLVYGLMLRSGNDAAAAIAEHVGGSLGGFVYMMNQKAEQIGME 149

Query: 173 NTIYKNASGLHD-KNQITTARDQAILG--ILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           NT ++N  GL D +N  +TA D AIL    +  K++ Q      + K      +  N NK
Sbjct: 150 NTRFQNPHGLDDHENHYSTAYDMAILTKYAMKLKDY-QTISGTKVYKAETMESVWKNKNK 208

Query: 230 LLNKMHNID-GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           LL  ++    G KTGYT+ +   +V++       ++AV +  P   +      E +
Sbjct: 209 LLTGLYQYSTGGKTGYTKLAKRTLVSTASKDGTDLIAVTINDPNDWDDHMNMFEYV 264


>gi|172056057|ref|YP_001812517.1| Serine-type D-Ala-D-Ala carboxypeptidase [Exiguobacterium sibiricum
           255-15]
 gi|171988578|gb|ACB59500.1| Serine-type D-Ala-D-Ala carboxypeptidase [Exiguobacterium sibiricum
           255-15]
          Length = 415

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 139/283 (49%), Gaps = 26/283 (9%)

Query: 35  LFLSIIMISMASEL---HAK-PKY---SSIVID-VNKNQMTGFKQDEPRYPASLTKMMTL 86
           LFLS+++++   +    HA+ P     S I++D V    +   + D    PAS+TK+MTL
Sbjct: 7   LFLSVLILTAGGQPMTGHAETPDIQAESYIMVDAVTGKILLAEQADLALPPASMTKLMTL 66

Query: 87  YIIFEYLQSKKLHLNTQI-P---VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           Y++ + ++ KKL  N  + P   V K A T   ++L +++ TY   E    A I +SAND
Sbjct: 67  YLVRQQIEQKKLSWNQTVRPSEKVLKLAKTPGIARLPIRKTTYTIRELYDAAFI-KSAND 125

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN------QITTARDQAI 196
            +    E ++G+EK+F   M+  A  +GM++T Y NASGL   +       + TA D ++
Sbjct: 126 AAVLLAEVMAGTEKQFVERMNETAVALGMEDTEYANASGLDAVDATLPGTNLMTAMDISL 185

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTGYTRNSGFNI 252
           L I   +++P                 + N NK+L +       + G+KTG T  +G+  
Sbjct: 186 LIIRYIQDYPDVLDVTKRSFITINGEKVENSNKMLPRQPYAYSGMRGMKTGTTDLAGYCF 245

Query: 253 VTSLRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKKT 292
            +     +  +V+VVM   + + R    +K L+   SF E  T
Sbjct: 246 ASVATRGNLTLVSVVMRTTSDKARFAETKKLLDYGFSFFEPLT 288


>gi|311028943|ref|ZP_07707033.1| D-alanyl-D-alanine carboxypeptidase dacA [Bacillus sp. m3-13]
          Length = 459

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 126/256 (49%), Gaps = 38/256 (14%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNP--SKLYLKEKTYF 126
           DE    AS+TKMMT Y++ E ++  KL  + ++ +S  A   + + P  S + ++++  +
Sbjct: 59  DEALPVASMTKMMTEYLLLEAIEDGKLDWSKEVILSDYAQAISQKYPELSNVPMRKQEPY 118

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--- 183
           T ++   A+   SAN  + A  E I+GSE KF  +M+ KA++IG++N  + N++GL+   
Sbjct: 119 TIKELYEAMAIYSANGATIALAEAIAGSETKFVEMMNAKAEEIGLENYNFVNSTGLNNED 178

Query: 184 -------------DKNQITT--ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI----- 223
                        D N+ TT  A+D A L   L  ++P+     SI    +R        
Sbjct: 179 LAVGGVPMHPEGTDANEETTLSAKDTARLAHRLLTDYPEILDTASIPFKVFREGTPDAID 238

Query: 224 ITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           + N NK+L       +   IDG+KTG T  +GFN   +       +++VVM    +   D
Sbjct: 239 MPNWNKMLFTEELKVQFEGIDGLKTGSTDAAGFNFTGTAERDGMRVISVVM----NTTND 294

Query: 278 QKALELITSFLEKKTL 293
           +     I+ F+E K L
Sbjct: 295 EGVSTEISRFIETKKL 310


>gi|312867167|ref|ZP_07727377.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis F0405]
 gi|311097296|gb|EFQ55530.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis F0405]
          Length = 443

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 120/256 (46%), Gaps = 34/256 (13%)

Query: 54  YSSIVIDVN-KNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +SS++ID N  N +     DEPR PAS++K+MTLY++FE + S K+  +T I    TA+ 
Sbjct: 42  HSSLIIDGNTGNVLWKDNIDEPRDPASMSKLMTLYLLFEDMASGKIGKDTVI--KATASD 99

Query: 113 QNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNK 165
           Q   K+Y      +     +T  + I   +  S+N  +      +S ++   F   M+ K
Sbjct: 100 QAIGKIYEISNNNIVAGVDYTIPELITMTVVPSSNVSTLMLANLMSNNDPDAFIERMNAK 159

Query: 166 AKKIGMQNTIYKNASGL---------------HDKNQITTARDQAILGILLRKNFPQYYK 210
           AK++GM NT++ N SG                +D    TTARD  IL       +P    
Sbjct: 160 AKELGMTNTVWNNPSGAAISTLQGYYPVNNYPNDAANQTTARDLGILVYHFINQYPDILN 219

Query: 211 Y-----FSIRKFRYRNRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           Y      +++K          +N  L      +  +DG+KTG +    FN + +++  + 
Sbjct: 220 YTNQAQVTVKKGTPYEETFDTYNYSLPGAKYALKGVDGLKTGSSPRGAFNYIATIKRGNQ 279

Query: 262 PIVAVVMGMPTSQERD 277
            ++AV+MG+    ++D
Sbjct: 280 RLIAVIMGVGDWADQD 295


>gi|225018712|ref|ZP_03707904.1| hypothetical protein CLOSTMETH_02662 [Clostridium methylpentosum
           DSM 5476]
 gi|224948440|gb|EEG29649.1| hypothetical protein CLOSTMETH_02662 [Clostridium methylpentosum
           DSM 5476]
          Length = 390

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 17/249 (6%)

Query: 43  SMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKL 98
            + + + A+P  S+   I+I+ N  ++   K  + + P AS TK+MT  I  E       
Sbjct: 19  CIPASVQAEPGVSAKAAILIEANSGKILYQKNAQQKLPMASTTKIMTSLIALE-----SG 73

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
           +L+    V + A     S + L+     T       ++ +S ND + A    ++GS + F
Sbjct: 74  NLDEWFTVDENAIKVEGSSMGLQAGDQVTMRTLAYGMLLQSGNDAANAVAVKLAGSAEAF 133

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG--ILLRKNFPQYYKYFSIRK 216
           A  M+ +A++IGM N+ +   SGL ++   +TA D A L    L    F +    +   K
Sbjct: 134 AEKMNERAQQIGMANSHFVTPSGLDNEEHYSTAEDMAKLARTALQNDGFREICSTYQT-K 192

Query: 217 FRYRN----RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
             Y N    R +TNHN+LL +     G+KTG+T+ SG  +V++       ++AV +  P 
Sbjct: 193 LEYGNPPYTRWMTNHNRLLKEYEGTIGVKTGFTKKSGRCLVSAAERDGVRLIAVTLNAP- 251

Query: 273 SQERDQKAL 281
           S   D KA+
Sbjct: 252 SDWSDHKAM 260


>gi|194018065|ref|ZP_03056670.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus pumilus ATCC
           7061]
 gi|194010257|gb|EDW19834.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus pumilus ATCC
           7061]
          Length = 441

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 134/276 (48%), Gaps = 36/276 (13%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKY--------SSIVIDVNKNQMTGFKQDEPRYP-AS 79
           QLM  IL L++I+ +      AK           ++I+I+ +  ++   K  E R P AS
Sbjct: 8   QLMVSILALALIVTAFTPMSKAKAAEDPFNVNAKAAILIEASTGKILYSKNAEQRLPIAS 67

Query: 80  LTKMMTLYIIFEYLQSKKLHLN-TQIP---VSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           + KMMT Y++ E +   K+  + T  P   V + +  ++ S + L++   +T ++   A 
Sbjct: 68  MAKMMTEYLLLEAIAEGKVKWDQTYTPDDYVYEISQDRSLSNVPLRKDGSYTVKELYQAT 127

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH------------ 183
              SAN  +    E I+GSE KF   M+ KAK++G+ N  + NA+GL             
Sbjct: 128 AIYSANAAAIGLAEVIAGSESKFVEKMNAKAKELGLTNYKFVNATGLENKDLHGKQPKGT 187

Query: 184 --DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHN----KLLN 232
             D+    +A+D A+L   L K+ P+  +  SI K ++R        + N N     L+ 
Sbjct: 188 GPDEESEVSAKDMALLAQHLIKDHPEILETSSIAKTKFREGTDDEMDMPNWNFMLKGLVK 247

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +   +DG+KTG T ++G +   + +  D  ++AV++
Sbjct: 248 EYKGVDGLKTGSTDSAGSSFTGTAKQGDMRVIAVIL 283


>gi|229133606|ref|ZP_04262433.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
 gi|228650006|gb|EEL06014.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
          Length = 338

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 123/229 (53%), Gaps = 17/229 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S+ +ID N  ++   K +E P   A+L+K+MT YI  E L   K+ L+  + +S     A
Sbjct: 37  SATLIDTNSGEIVYKKNEETPIQSATLSKLMTEYIALEQLNEGKIQLDELVKISNEVFRA 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             +P ++  K+KT  T    + AL     N  + A  E I+G+E  F +LM++KAK++ +
Sbjct: 97  ETSPIQVTSKDKT--TVRDLLHALFLTGNNRSALALAEHIAGNEDNFTLLMNDKAKQLKL 154

Query: 172 -QNTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIIT 225
            Q + + NA+G++   +K   TT+ D A L   L K+FP        +  +F +++  + 
Sbjct: 155 SQPSPFLNATGINNDTNKQSTTTSIDVAKLATQLVKDFPDVLNVTKLTSYQFTFKDSKVF 214

Query: 226 NHNKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N NK+   LN   K+  +DG++T ++ N  ++ V++    D  +++V++
Sbjct: 215 NTNKMIYSLNKNIKLQGVDGLQTSFSTNGNYSFVSTATRGDTRLISVIL 263


>gi|225388033|ref|ZP_03757757.1| hypothetical protein CLOSTASPAR_01767 [Clostridium asparagiforme
           DSM 15981]
 gi|225045886|gb|EEG56132.1| hypothetical protein CLOSTASPAR_01767 [Clostridium asparagiforme
           DSM 15981]
          Length = 510

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 104/219 (47%), Gaps = 18/219 (8%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGI 132
           YPAS+TK+MT  ++ E       +L+  +  S TA T        L L E    T  Q +
Sbjct: 169 YPASITKLMTALLVAE-----NCNLDDTVTFSSTATTNLEAGAVSLNLVEGDKLTVRQCL 223

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
            AL+ +SAN+V  A  E ++GS  KFA +M+ +A  +G  NT + N  GL+D +  TT  
Sbjct: 224 YALLLKSANEVGNALAEHVAGSNAKFADMMNARAAALGCTNTHFTNPHGLNDNDHYTTPN 283

Query: 193 DQAILGILLRKN-----FPQYYKYFSIRKFRYRNRIITNHNKLLNK-----MHNIDGIKT 242
           D A++     +N           Y      +   R I+  +K+L          I G KT
Sbjct: 284 DMALIAKAAFENGTVRTVASTLSYDLPATKKNAARTISIGHKMLYPNDSRYYAGIIGGKT 343

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           GYT  +G  +VT++      ++AVVM   ++   D KAL
Sbjct: 344 GYTSKAGNTLVTAVERDGVRLIAVVMKSKSTHYTDTKAL 382


>gi|308174109|ref|YP_003920814.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens DSM
           7]
 gi|307606973|emb|CBI43344.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*)
           [Bacillus amyloliquefaciens DSM 7]
 gi|328552762|gb|AEB23254.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens
           TA208]
 gi|328912440|gb|AEB64036.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*)
           [Bacillus amyloliquefaciens LL3]
          Length = 383

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 120/237 (50%), Gaps = 16/237 (6%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDE--PRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           +++H   K S+I+ID    ++  F +DE   R  AS+TK+MT  +  E  + +K      
Sbjct: 28  AQIHVSAK-SAILIDGTSGRVL-FAKDEHHKRRIASITKIMTAVLAIESGKMEK-----T 80

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           + VS  A     S +YL+       +  +  L+ RS ND + A  E++ GS   F  +M+
Sbjct: 81  VTVSPNAVKTEGSAIYLQPGQKVKLKDLVYGLMLRSGNDAAAAIAEYVGGSLDGFVFMMN 140

Query: 164 NKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFS---IRKFRY 219
            KA++IGM+NT ++N  GL D +N  +TA D A+L     K   + Y+  S   + K   
Sbjct: 141 QKAEQIGMENTKFQNPHGLDDHENLYSTAYDMALLTKYAMK--IKEYRTVSGTKVYKAET 198

Query: 220 RNRIITNHNKLLNKMHNID-GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
            +R+  N NKLL  ++    G KTGYT+ +   +V++       ++AV +  P   +
Sbjct: 199 MDRVWKNKNKLLTGLYPYSTGGKTGYTKIAKRTLVSTASKDGTDLIAVTINDPDDWD 255


>gi|212638873|ref|YP_002315393.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus
           WK1]
 gi|212560353|gb|ACJ33408.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus
           WK1]
          Length = 345

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 108/218 (49%), Gaps = 19/218 (8%)

Query: 64  NQMTG---FKQDE--PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
            Q TG   F++D    R  AS+TK+MT  +  E  + ++L     + VS+ A     S +
Sbjct: 12  EQTTGRVLFEKDAHTKRRIASITKIMTAILAIESGKWEEL-----VTVSERAVRTEGSSI 66

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
           YLK       +  +  L+ RS ND + A  E + GS + F  LM+ KA +IGM NT + N
Sbjct: 67  YLKPGEKIALKHLVYGLMLRSGNDAAVAIAEHVGGSVEGFVFLMNKKAAEIGMTNTEFAN 126

Query: 179 ASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN------RIITNHNKLL 231
             GL D +N  +TA D A+L     +N  Q+ +    + +R  N      RI  N NKLL
Sbjct: 127 PHGLDDAENHYSTAYDMALLMRYAMQN-EQFREVSGTKLYRAPNPTEDWDRIWRNKNKLL 185

Query: 232 NKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             ++    G KTGYT+ +   +VT+       ++AV +
Sbjct: 186 THLYKYCTGGKTGYTKRAKRTLVTTASKDGLDLIAVTI 223


>gi|319651403|ref|ZP_08005532.1| DacB protein [Bacillus sp. 2_A_57_CT2]
 gi|317396934|gb|EFV77643.1| DacB protein [Bacillus sp. 2_A_57_CT2]
          Length = 374

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 103/208 (49%), Gaps = 14/208 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +E R  AS+TK+MT  +  E   S K+  +  + VS  A     S +YLK       E  
Sbjct: 44  NEVRRIASITKIMTAILAIE---SGKM--DDMVKVSDRAVRAEGSSIYLKAGEKIKLEDL 98

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITT 190
           +  L+ RS ND + A  E + GS + F  LM+ KA++IGM+NT + N  GL D ++  +T
Sbjct: 99  VYGLMLRSGNDSAVAIAEHVGGSLEGFGFLMNKKAEEIGMKNTHFANPHGLDDHEDHYST 158

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRN------RIITNHNKLLNKMHN-IDGIKTG 243
           A D A+L      N   Y K    +  R  N      R+  N N+LL +++    G KTG
Sbjct: 159 AYDMALLTRYAMNN-ETYQKIAGTKVHRAPNPNESWDRVWKNKNRLLTELYEYCTGGKTG 217

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           YT+ +   +VT+       ++AV +  P
Sbjct: 218 YTKRAKRTLVTTASKGSLNLIAVTLNGP 245


>gi|253682141|ref|ZP_04862938.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum D
           str. 1873]
 gi|253561853|gb|EES91305.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum D
           str. 1873]
          Length = 377

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 117/227 (51%), Gaps = 12/227 (5%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I ID     +   K  +   P AS TK+MT  +  +Y      +L+ +  VS  AA  
Sbjct: 41  SAIAIDSKTKCVLYEKNSDMLLPIASTTKIMTTLVALKYG-----NLDDKFEVSSKAANI 95

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S++  K+    + ++ +  L+ RS ND +    E +SGS +KF  LM+  A +IG  N
Sbjct: 96  RGSQVGYKKGESISLKELLYGLMLRSGNDAAITIAEGLSGSVEKFCELMNEYAVEIGALN 155

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN----RIITNHNK 229
           + +++  GL  +N  +TA D A +    ++N   + K  +++    +     R   N NK
Sbjct: 156 SHFESPHGLDSQNHYSTAYDLARITAKAKEN-ELFNKIVAVKDVEAKEYGFTRSYHNINK 214

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM-PTSQE 275
           +L ++ N +G+KTGYT  +G  +VTS++  DD I+ VV+   P  +E
Sbjct: 215 ILYQIPNANGVKTGYTGGAGKCLVTSVKDNDDDIIIVVLNCTPRWKE 261


>gi|290968005|ref|ZP_06559554.1| serine-type D-Ala-D-Ala carboxypeptidase [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781911|gb|EFD94490.1| serine-type D-Ala-D-Ala carboxypeptidase [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 321

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 105/209 (50%), Gaps = 11/209 (5%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+ ++DVN  ++   +  ++  +PAS TK++TL      L   +  L   + +S+ A   
Sbjct: 52  SACLLDVNTGKILFSYHGNKWVHPASTTKIVTL---LTALAQGRERLEQPLYISRQAVET 108

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
            PS+L L      +  + +  ++  S ND + A  E + GS   FA +M+ +AKK+G  +
Sbjct: 109 EPSRLGLATTDKVSVREALTGMMVVSGNDAAVAVAETLGGSVPAFADMMNGQAKKMGATH 168

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF------RYRNRIITNH 227
           +++ N +GL   +  TTA D A +     KN+ ++     ++ +       ++ + +   
Sbjct: 169 SLFLNPNGLTQVHHHTTAIDMARMAAYGMKNYAEFRDIVGLKSYTMKYLDAHKPKTVYTT 228

Query: 228 NKLLNKMH-NIDGIKTGYTRNSGFNIVTS 255
           N+ L   +   DGIKTGYTR +G  +V S
Sbjct: 229 NRFLRSGYIGADGIKTGYTRAAGPCLVAS 257


>gi|325846139|ref|ZP_08169233.1| serine-type D-Ala-D-Ala carboxypeptidase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481732|gb|EGC84767.1| serine-type D-Ala-D-Ala carboxypeptidase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 408

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 122/243 (50%), Gaps = 22/243 (9%)

Query: 76  YP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-QNP--SKLYLKEKTYFTTEQG 131
           YP AS++K+MT  +  E + S K+  +T++  +K A     P  S L +KE   +T ++ 
Sbjct: 66  YPIASMSKLMTFLLTREAIDSGKISYDTKVKGTKEAEDLTGPEYSSLGIKEGEEYTIKEL 125

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---DKNQI 188
           I  LI  S ND +      ISGSE  FA  M+ KA+++ +++  Y NASG++   D    
Sbjct: 126 ITGLIVVSGNDCANLLASKISGSEDNFAKEMNKKAQELNLKSQKYYNASGVNTEDDTQNS 185

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK----LLNKMHNIDGIKTGY 244
           ++A+D   L  ++ K +P   +Y ++       + I  H K    L   +  +DG+KTG 
Sbjct: 186 SSAKDLFELSRIILKKYPDILEYSNMDGIDDNKKDI--HKKSTIPLKGDIKGVDGLKTGT 243

Query: 245 TRNSGFNIVTSLRY-KDDP-----IVAVVMGMPTSQERDQKALELI---TSFLEKKTLKH 295
           T  +G  ++T++   K DP      +++VMG      RD    +LI   + +   K L  
Sbjct: 244 TEEAGSCLITTIDMGKFDPKNDYRAISIVMGAKDHPTRDAAMTDLIYYVSRYFNYKKLAD 303

Query: 296 QQT 298
           +QT
Sbjct: 304 KQT 306


>gi|237740954|ref|ZP_04571435.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 4_1_13]
 gi|229430998|gb|EEO41210.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 4_1_13]
          Length = 414

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 125/257 (48%), Gaps = 10/257 (3%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           + ++++   K  +   K  +  YP AS+TKMM+L + F+ + +  + LN  + +SK    
Sbjct: 159 FRAVIVGDTKGNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGNISLNDSVRISKNPLK 218

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGM 171
              S + LK    F  E  I A    SAN+ + A  E++  GS   F   M+ K K++G+
Sbjct: 219 YGGSGIALKVGQMFVLEDLIKASAVYSANNATYAIAEYVGKGSVFSFVTKMNRKLKELGL 278

Query: 172 QNTI-YKNASGLHDKNQITTARDQAILGIL-LRKNFPQYYKYFSIRKFR----YRNRI-I 224
           QN I Y   +GL  +       +    GI  L     +Y KY  I   +    +  +I I
Sbjct: 279 QNEIRYHTPAGLPTRVTKQPMDEGTARGIYKLSIEALKYKKYIEIAGIKSTKIHNGKISI 338

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            N N L+ + + + GIKTG+ + + +NI  + +++D  ++ VVMG  T + RD+  L ++
Sbjct: 339 RNRNHLIGE-NGVYGIKTGFHKEAKYNIAVASKFQDTDVIIVVMGGETYKTRDKIVLSVL 397

Query: 285 TSFLEKKTLKHQQTHRK 301
                  T+K+    RK
Sbjct: 398 DILNNNYTVKNGLIKRK 414


>gi|153938417|ref|YP_001392255.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum F str. Langeland]
 gi|152934313|gb|ABS39811.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum F str. Langeland]
          Length = 415

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 125/259 (48%), Gaps = 27/259 (10%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           +++  IL  S+   ++A    +KP         +++D    ++   K  D+P  PAS TK
Sbjct: 7   KILCSILLFSLFFSNVAWAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYPPASTTK 66

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT  +  E     + +L+  + + +       SK+Y+ E         +  L+  SAND
Sbjct: 67  IMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLLLASAND 121

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E++SGS   F+  M+ +AK++G  NT + N SGL++    T+ARD AI+   L 
Sbjct: 122 CAEALAEYLSGSLDNFSKDMNKRAKELGCTNTNFVNPSGLYNDKHRTSARDLAIIMNELV 181

Query: 203 KNFPQYYKYFSIRKFRY-------RNRIITNHNKLLNKMHN-----IDGIKTGYTRNSGF 250
           K  P+Y K  +   +           R + N NKL+ K  N      +G KTGYT  S  
Sbjct: 182 KQ-PEYSKIATTLSYNIPPTNKSKEKRPLWNENKLIQKHSNFYYKGCEGGKTGYTVQSDH 240

Query: 251 NIVTSLRYKDDP--IVAVV 267
           + V S+  KD+   IVA+V
Sbjct: 241 SYVASVN-KDNHRIIVALV 258


>gi|227873312|ref|ZP_03991575.1| D-alanyl-D-alanine carboxypeptidase [Oribacterium sinus F0268]
 gi|227840841|gb|EEJ51208.1| D-alanyl-D-alanine carboxypeptidase [Oribacterium sinus F0268]
          Length = 525

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 109/221 (49%), Gaps = 15/221 (6%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           +PAS+TK++T  ++ E++++ +  +      ++     N + +        +    + +L
Sbjct: 74  FPASITKVLTAIVVLEHVENLEEKVTFSQEATRGNLENNSTVIAASPGDKLSVRDCLYSL 133

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  SAND + A  E ++GS +KFA LM+ KA +IG  N+ + N SGL++    T+A D A
Sbjct: 134 LLHSANDCANALAEHVAGSNEKFAELMNQKAAEIGCTNSHFTNPSGLNNPEHYTSALDMA 193

Query: 196 IL-------GILLRKNFPQYYKYFSIRKFRYRN---RIITNHNKLLNKMH-----NIDGI 240
            +           + +  Q Y +  + K+   N     I  H+K++ K +      +   
Sbjct: 194 KIMQYAISNPTFCQIDATQVYTHGPLIKYPDPNAPENTIYAHHKMMKKSNKEYYSGVFAG 253

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           KTGYT  +G  +VT+ +  D  ++ V++    SQ RD K L
Sbjct: 254 KTGYTLLAGNTLVTACKRGDTTLICVILNGHNSQYRDSKKL 294


>gi|168179469|ref|ZP_02614133.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum NCTC 2916]
 gi|182669511|gb|EDT81487.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum NCTC 2916]
          Length = 415

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 123/259 (47%), Gaps = 24/259 (9%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPASLT 81
            +++  IL  S+   ++A    +KP         +++D    ++   K  D+P  PAS T
Sbjct: 6   CKILCSILLFSLFFSNVALAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYPPASTT 65

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E     + +L+  + + +       SK+Y+ E         +  L+  SAN
Sbjct: 66  KIMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLLLASAN 120

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D + A  E++SGS + F+  M+ +AK++G  NT + N SGL++    T+ARD AI+   L
Sbjct: 121 DCAEALAEYLSGSLENFSKDMNKRAKELGCTNTNFVNPSGLYNDKHRTSARDLAIIMNEL 180

Query: 202 RKNFPQYYKYFSIRKFRY-------RNRIITNHNKLLNKMHN-----IDGIKTGYTRNSG 249
            K  P+Y K  +   +           R + N NKL+ K  N      +G KTGYT  S 
Sbjct: 181 VKQ-PEYSKIATTLSYNIPPTNKSKEKRPLWNENKLIQKHSNFYYKGCEGGKTGYTVQSD 239

Query: 250 FNIVTSLRYKDDPIVAVVM 268
            + V S+   +  I+  ++
Sbjct: 240 HSYVASVNKNNHRIIVALV 258


>gi|212695505|ref|ZP_03303633.1| hypothetical protein ANHYDRO_00021 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677505|gb|EEB37112.1| hypothetical protein ANHYDRO_00021 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 408

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 143/299 (47%), Gaps = 32/299 (10%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVN------KNQMTGF----KQDEPRYP-A 78
           L+  ILFL   +   A E  AK   + +  D +       NQ +G     K  +  YP A
Sbjct: 10  LILAILFLFSPLNVFADESIAKEGDNVVGADKDVRAYLIGNQESGDIFYQKNADKTYPIA 69

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-QNP--SKLYLKEKTYFTTEQGILAL 135
           S++K+MT  +  E + S K+  +T++  +K A     P  S L +KE   +T ++ I  L
Sbjct: 70  SMSKLMTFLLTREAIDSGKISYDTKVKGTKEAEDLTGPEYSSLGIKEGEEYTIKELITGL 129

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---DKNQITTAR 192
           I  S ND +      ISGSE  FA  M+ KA+++ +++  Y NASG++   D    ++A+
Sbjct: 130 IVVSGNDCANLLASKISGSEDNFAKEMNKKAQELNLKSQKYYNASGVNTEDDTQNSSSAK 189

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK----LLNKMHNIDGIKTGYTRNS 248
           D   L  ++ K +P   +Y ++       + I  H K    L   +  +DG+KTG T  +
Sbjct: 190 DLFELTRIILKKYPDILEYSNMDGIDDNKKDI--HKKSTIPLKGDIKGVDGLKTGTTEEA 247

Query: 249 GFNIVTSLRY-KDDP-----IVAVVMGMPTSQERDQKALELI---TSFLEKKTLKHQQT 298
           G  ++T++   K DP      +++VMG      RD    +LI   + +   K L  +QT
Sbjct: 248 GSCLITTIDMGKFDPKNDYRAISIVMGAKDHPTRDAAMTDLIYYVSRYFNYKKLADKQT 306


>gi|306830534|ref|ZP_07463702.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304427328|gb|EFM30432.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 416

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 113/239 (47%), Gaps = 25/239 (10%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTE 129
           P   AS+TK++T+Y++++ +   KL  +T++ +S  A    A  + S + ++ + Y T E
Sbjct: 57  PDGIASMTKILTVYLVYKAIDEGKLSWDTKVSISDYAYDLTANSDASNVPMEAREY-TVE 115

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH------ 183
           Q + A +  SAN  + A  E I G+E KF  +M  + ++ G+ +    NASGL+      
Sbjct: 116 QLVNAAMVASANSAAIALAEQIGGTESKFVDMMKAQLEEWGITDATIVNASGLNNSYLGD 175

Query: 184 ---------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
                    D+N + +ARD AI+   L   +P   K  S     +    +  +N +L  M
Sbjct: 176 NIYPGSSSTDENMM-SARDVAIIAQHLITEYPDILKITSQTTADFDGTTMNTYNYMLEGM 234

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
                 +DG+KTG T  +G + V +       I++VVM     ++ +    E     LE
Sbjct: 235 PYERSGVDGLKTGTTELAGASFVATSTENGMRIISVVMNADGWEDDEYARFEATNDLLE 293


>gi|227524973|ref|ZP_03955022.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus hilgardii
           ATCC 8290]
 gi|227087885|gb|EEI23197.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus hilgardii
           ATCC 8290]
          Length = 421

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 116/247 (46%), Gaps = 24/247 (9%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-- 111
           S+I +D +  Q+   K   +P   AS++K+MT+YI+ + +Q  KL  N Q+ +S   A  
Sbjct: 41  SAIAVDADTGQILYEKNAHQPLAIASISKLMTVYIVQKQIQEGKLSWNDQVKISPAVAKL 100

Query: 112 --TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 + + LK    +     + A +  SAN  + A G+ +SG+ + FA  M+  A+ +
Sbjct: 101 STASGLTNVPLKSGKSYKVRDLLKAALIVSANAAAIALGQKVSGNAQNFADKMTKTARGL 160

Query: 170 GMQNTIYKNASGLHDK--------------NQITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++  + NA+GL +K                + +A+D A+L   L ++FP   K     
Sbjct: 161 GIKDAKFYNAAGLTNKLTGSLMLKKDSPNAENLMSAKDIALLASRLEESFPGLTKITRQT 220

Query: 216 KFRYRNRIITNHNKLLN-----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +  +       HN+LL+     K   ++G+KTG +  +G     S  Y    IV VV+G 
Sbjct: 221 QMNFSGNSYAGHNQLLDDRQIAKGAVVNGLKTGTSDEAGACFAGSTTYHGRRIVTVVLGA 280

Query: 271 PTSQERD 277
             +   D
Sbjct: 281 RNNSATD 287


>gi|332977394|gb|EGK14172.1| serine-type D-Ala-D-Ala carboxypeptidase [Desmospora sp. 8437]
          Length = 377

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 99/211 (46%), Gaps = 12/211 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT  +  E        L  ++ V   A     S +YLK       E  +  L+ 
Sbjct: 62  ASLTKIMTAIVAIE-----NSDLTEKVKVKPGAVGVEGSSIYLKPGEEIPLEHLLYGLML 116

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           RS ND + A  E + GS + F   M+ KA+ +G++NT ++N  GL  K   ++A D A L
Sbjct: 117 RSGNDAAVAIAEHVGGSVEGFVYKMNEKAEYLGLRNTHFQNPHGLDAKEHYSSAEDLARL 176

Query: 198 GILLRKNFPQYYKYFS--IRKFRY----RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
                KN P++ K  S  ++   +     +R   N NK+L      DG+KTG+T+ S   
Sbjct: 177 TAYALKN-PEFRKIVSTQVKTVPWPGEEWHRKWYNKNKMLRLYPGGDGVKTGFTKLSRRT 235

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           +V+S   +   I  V +  P   E   + LE
Sbjct: 236 LVSSATREGRQIATVTLNAPNDWEDSMRLLE 266


>gi|134298517|ref|YP_001112013.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
           MI-1]
 gi|134051217|gb|ABO49188.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
           MI-1]
          Length = 410

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 113/224 (50%), Gaps = 15/224 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++++D     +   K++  R YPAS TK++T  +  E+ +     +  ++ +    +  
Sbjct: 32  TAVLLDAKSGAVLYGKEEHKRMYPASTTKVLTALVALEHAR-----MTDRVTIGPNPSKA 86

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             + ++L+E      ++ + AL+  SAND   A  E ++GS  KFA + + +A+++G  N
Sbjct: 87  GGTSIWLQEGEQLAMQELLYALMLNSANDAGVAIAEHVAGSVGKFAAMSNERARELGANN 146

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI-----RKFRYRNRIITNHN 228
           T + N  G+ +K+  +TA D A++G    KN        +I     R      + + NHN
Sbjct: 147 THFVNPHGMPNKDHYSTAYDLALIGQAALKNKDLRKILTTIHHEIPRADPEAQKYLFNHN 206

Query: 229 KLL-NKMH---NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KLL +K +      G+KTGYT  +G  I+ S       ++AVV+
Sbjct: 207 KLLWSKTYGYKGATGLKTGYTVEAGQCIIASAERNGMELIAVVL 250


>gi|255505895|ref|ZP_05348727.3| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
           DSM 14469]
 gi|255265270|gb|EET58475.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
           DSM 14469]
          Length = 625

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 26/214 (12%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQG 131
            YPAS+TK+MT  I  E     K +L+  +  S+ A        S L L      T EQ 
Sbjct: 97  EYPASITKIMTTLIALE-----KGNLSDVVTFSENAVYSIEYGSSHLGLTAGEELTLEQC 151

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SAN++S A  E I G  + F  +M+ KA+++G  NT + N  GLHD+N    A
Sbjct: 152 LYGIMLASANEISNAVAEHIGGDIETFVGMMNEKAQELGCTNTHFVNVHGLHDENHYVCA 211

Query: 192 RDQA--------------ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNI 237
           +D A              I+G  +  NFP+      +R F   +++I+    L +     
Sbjct: 212 KDMALIMQAALKNEKFREIIGT-VEYNFPETNLVDEVRYFINHHKMISEEGMLYD---GC 267

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
            G K GYT  +   +VT+       I++VV+  P
Sbjct: 268 IGGKNGYTDEAWNTLVTAAERDGMTIISVVLRCP 301


>gi|182416870|ref|ZP_02948256.1| D-alanyl-D-alanine carboxypeptidase [Clostridium butyricum 5521]
 gi|237667877|ref|ZP_04527861.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182379332|gb|EDT76831.1| D-alanyl-D-alanine carboxypeptidase [Clostridium butyricum 5521]
 gi|237656225|gb|EEP53781.1| putative D-alanyl-D-alanine carboxypeptidase DacB [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 300

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 104/197 (52%), Gaps = 8/197 (4%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK++T  I  E     +  LN  + +SK A++   SK+  KE    T ++ I  L+ 
Sbjct: 77  ASTTKILTSLIAIE-----QDDLNAPVTISKKASSIRGSKVGYKENEVITLKELIFGLMF 131

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND + A  E I GS + FA +M++ A+ IG+ ++ +++  GL      ++A D A+L
Sbjct: 132 KSGNDAAIAIAEHIGGSVEGFAEIMNHYARGIGILDSHFESPHGLDSSQHYSSAYDLALL 191

Query: 198 GI--LLRKNFPQYYKYFSIRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
               +    F +     SI K +Y   R   N NK+L K+   +G+KTGYT  +G  +V+
Sbjct: 192 TCKGMDYDLFREVVGSKSISKDKYNFTRDYNNINKILWKIPGANGVKTGYTGQAGKCLVS 251

Query: 255 SLRYKDDPIVAVVMGMP 271
           S+   +  I+ VV+  P
Sbjct: 252 SVNNNNKDIIIVVLNCP 268


>gi|331269468|ref|YP_004395960.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum
           BKT015925]
 gi|329126018|gb|AEB75963.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum
           BKT015925]
          Length = 381

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 12/227 (5%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I ID     +   K  E   P AS TK+MT  +  +Y      +L+ +  VS  AA+ 
Sbjct: 46  SAIAIDSKTKCVLYEKNAEMLLPIASTTKIMTTLVALKYG-----NLDDKFQVSAKAASI 100

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S++  K+      ++ +  L+ RS ND +    E +SGS +KF  LM+  A +IG  N
Sbjct: 101 RGSQVGYKKGESVALKELLYGLMLRSGNDAAITIAEGLSGSVEKFCELMNEYAVEIGALN 160

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN----RIITNHNK 229
           + +++  GL  +N  +TA D A +    ++N   + K   ++    +     R   N NK
Sbjct: 161 SHFESPHGLDSQNHYSTAYDLARITAKAKEN-ELFNKIVGVKDVEAKEYGFTRSYHNINK 219

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM-PTSQE 275
           +L ++ N +G+KTGYT  +G  +VTS++  DD I+ VV+   P  +E
Sbjct: 220 ILYQIPNANGVKTGYTGGAGKCLVTSVKDHDDDIIIVVLNCTPRWKE 266


>gi|89099074|ref|ZP_01171953.1| DacB [Bacillus sp. NRRL B-14911]
 gi|89086204|gb|EAR65326.1| DacB [Bacillus sp. NRRL B-14911]
          Length = 376

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 100/202 (49%), Gaps = 14/202 (6%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MT  +  E   S KL  +T+  VS+ A     S +YL+       E  +  L+ 
Sbjct: 52  ASITKIMTAILAIE---SGKL--DTKAKVSEKAVRAEGSSIYLQPGEKILLEDLVYGLML 106

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAI 196
           RS ND + A  E + GS + F  LM+ KA++IGM NT + N  GL D +   +TA D A+
Sbjct: 107 RSGNDSAVAIAEHVGGSLEGFVYLMNKKAEEIGMINTHFANPHGLDDHEEHYSTAYDMAV 166

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRN------RIITNHNKLLNKMHN-IDGIKTGYTRNSG 249
           L      N   Y K    +  R  N      R+  N N+LL +M+    G KTGYT+ + 
Sbjct: 167 LTRYAMNN-ETYRKIAGTKMHRAPNPNESWDRVWKNKNRLLTEMYEYCTGGKTGYTKRAK 225

Query: 250 FNIVTSLRYKDDPIVAVVMGMP 271
             +VT+       ++AV +  P
Sbjct: 226 RTLVTTASKDGLDLIAVTLNGP 247


>gi|168070883|ref|XP_001786972.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660038|gb|EDQ48214.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 228

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 82/152 (53%), Gaps = 16/152 (10%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEKTYFT 127
           D P  PAS++KMM+ Y++ E ++ KK+  + Q+PVS+     A   + S +YL     F+
Sbjct: 74  DVPLPPASMSKMMSEYLVQEAVKQKKISWDEQVPVSEYAFYVAKISDASGVYLNAGESFS 133

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----- 182
            ++   A+   SAND +    E ++GSE  F  +M+ KAK++GM NT +  ++GL     
Sbjct: 134 VKELYKAMAVVSANDATVLLAEKVAGSEPNFVQMMNKKAKELGMTNTSFVTSTGLPANEL 193

Query: 183 -------HDKNQITTARDQAILGILLRKNFPQ 207
                       + +ARD AIL   L ++FP+
Sbjct: 194 GPYSVQTDQVENLMSARDSAILARALIRDFPE 225


>gi|308071619|ref|YP_003873224.1| D-alanyl-D-alanine carboxypeptidase [Paenibacillus polymyxa E681]
 gi|305860898|gb|ADM72686.1| D-alanyl-D-alanine carboxypeptidase [Paenibacillus polymyxa E681]
          Length = 313

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 131/268 (48%), Gaps = 26/268 (9%)

Query: 35  LFLSIIMISMASELH-AKPKY---SSIVIDVNKNQM-TGFKQDEPRYPASLTKMMTLYII 89
           + + +I I++   L   KP     +++++D++  ++      D P   A+++K+MT  ++
Sbjct: 15  VLIILIFITLGPRLLIGKPNVDAEAAVLMDMHTGELLMDVNGDTPMPSANMSKLMTELLV 74

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            E +++ +L  N ++ +S+ A+T     L L+     T  +   +++  SAND + A  E
Sbjct: 75  LEDIRAGRLGWNDEVRISRYASTVGGVNLSLRYGERMTVSELFQSMVVYSANDAAVALAE 134

Query: 150 FISGSEKKFAILMSNKAKKIGM-QNTIYKNASGL--------HDKN----QITTARDQAI 196
             +G+E  F   M+ KA +IG+  ++ + NASG         H ++       TA D A 
Sbjct: 135 RSAGNESAFVKRMNGKAAQIGLSSDSRFSNASGAGQSELGPNHPEDIQGETKMTASDTAK 194

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNR--IITNHNKLLNKM------HNIDGIKTGYTRNS 248
           L   L  + P+  +  S  +   +++   I+N N +L  +         DG+K GYT ++
Sbjct: 195 LASYLITSHPEILRTSSRTQMELKDKGIYISNTNWMLPSLAGPYSYAGTDGLKAGYTSDA 254

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           G+    +       +VAVV+G P+ +ER
Sbjct: 255 GYCFTGTAEQHGRRLVAVVLGAPSKEER 282


>gi|196231311|ref|ZP_03130170.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chthoniobacter flavus
           Ellin428]
 gi|196224647|gb|EDY19158.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chthoniobacter flavus
           Ellin428]
          Length = 295

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 24/227 (10%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I++D    ++      D+ R  AS  K++T  I+ E   +  L     +  S T A  
Sbjct: 62  SAILLDAKTGKIIFEMNADQRRPVASTQKLLTSLIVAE---TGDLDHKVHVEASDTWA-- 116

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
            P+ LY+K    ++    +  L+  S NDV+ A     +GS + FA  M+ KA ++GM+N
Sbjct: 117 EPTMLYIKPGNVYSRYDFLNVLLVHSMNDVARALARDNAGSLENFAARMNAKASELGMRN 176

Query: 174 TIYKNASGLHDKNQITTARDQA-----------ILGILLRKNFPQYYKYFSIRKFRYRNR 222
           + + N +GL    Q +TARD A           I GI+ +K+   +Y    +R F   N+
Sbjct: 177 SNFVNPNGLPIPGQYSTARDMAQVALAAYRNPIIRGIVCQKSVTWHYNDGRVRVFETTNQ 236

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           ++  +  L N      G+KTGYT  +G  +++S  +    ++AVV+G
Sbjct: 237 VLKRY-PLCN------GMKTGYTEAAGHCLISSASHNGRDVIAVVLG 276


>gi|28211671|ref|NP_782615.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88]
 gi|28204113|gb|AAO36552.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88]
          Length = 419

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 126/258 (48%), Gaps = 33/258 (12%)

Query: 34  ILFLSIIMISMASELHAK----PKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMT 85
           I FLS + I+ A+ ++AK    P  S+   I++D    ++   K  ++P  PAS TK+MT
Sbjct: 17  IFFLSFVCINSAT-INAKTSKPPSVSADGAILMDAKTGKVLYEKNINKPYPPASTTKIMT 75

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
             +  E       +L+ ++ V K     + SK+++ E      +  + AL+  SAND + 
Sbjct: 76  ALLTLE-----NCNLDDEVVVGKKPPLADGSKIFIHEGEKLKVKDLLYALLLESANDAAE 130

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E I GS   F+ LM+ +AK++G  NT + N +GL++    TTA+D A    L+ K  
Sbjct: 131 ALAEHIGGSINDFSKLMNKRAKELGCTNTNFVNPNGLYNAKHRTTAQDLA----LIMKEV 186

Query: 206 PQYYKYFSIR-----KFRYRN-----RIITNHNKLLNK-----MHNIDGIKTGYTRNSGF 250
            QY  Y  I      K +  N     R + N NKL+ +         +G KTGYT  S  
Sbjct: 187 SQYEDYRKISNTITYKIKPTNKSKKERPLWNKNKLVQQNSKYYFKGCNGGKTGYTTQSQH 246

Query: 251 NIVTSLRYKDDPIVAVVM 268
           + V S    D  ++ V++
Sbjct: 247 SYVVSANRGDFQLIVVLI 264


>gi|291614764|ref|YP_003524921.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sideroxydans
           lithotrophicus ES-1]
 gi|291584876|gb|ADE12534.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sideroxydans
           lithotrophicus ES-1]
          Length = 268

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 26/240 (10%)

Query: 31  MGKILFLSIIMIS---MASELHAKP---KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMM 84
           M K LF+ + +++    A+     P     ++ ++++N   +   + D    PASLTK+M
Sbjct: 1   MRKALFIGLWLLANTVQATTAQPDPFPEVATAYLVELNGKAIWAKQPDRRLPPASLTKLM 60

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T  ++ E  +   +     + V+ +A  +  +++ LK    F  +  + A +  SAND  
Sbjct: 61  TALLVLERTRPDDI-----VTVTPSATHETGTRIGLKTGERFHVQDLLAAALLPSANDAC 115

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-NQITTARDQAILGILLRK 203
            A  + + G E  F   M+ +A ++GM+NT + NA G HDK    ++A+D +IL   L K
Sbjct: 116 QALADHLDGDETGFVARMNQRAHELGMRNTHFANACG-HDKARHYSSAKDLSILAHALLK 174

Query: 204 NFPQYYKYFSIRKF---------RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
            +P      S RK          RY   I+ + N L+ +     GIKTGYT N+G  +V 
Sbjct: 175 -YPSLLDVTSQRKLQIATLDGQHRY---ILESKNALIGRYDGAIGIKTGYTPNAGKCLVA 230


>gi|110800833|ref|YP_696799.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens ATCC
           13124]
 gi|168208823|ref|ZP_02634448.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens B str.
           ATCC 3626]
 gi|110675480|gb|ABG84467.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens ATCC
           13124]
 gi|170713162|gb|EDT25344.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens B str.
           ATCC 3626]
          Length = 444

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 114/224 (50%), Gaps = 20/224 (8%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +E   PAS TK MT  +  E     K +LN  + + K       +++ L+E   +T E+ 
Sbjct: 61  NEKLAPASTTKTMTALLTVE-----KANLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEEL 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + AL+ +SAND + A  E ISGSE+KFA LM+ +A+++G +NT + NASGL + + +TT 
Sbjct: 116 LNALLIQSANDAAVALAEHISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT-------NHNKLLNKMH-----NIDG 239
            D A++  +  KN P   +      +     I++       N+N+L+++       +I  
Sbjct: 176 YDLALIMNVASKN-PIIDEITKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFC 234

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE--RDQKAL 281
            KTGYT  S      + +  D  ++  ++G  T  +   D K L
Sbjct: 235 NKTGYTTKSRHTFTCAAKRGDRKLILTLLGYDTKDQYYEDTKNL 278


>gi|169334343|ref|ZP_02861536.1| hypothetical protein ANASTE_00741 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259060|gb|EDS73026.1| hypothetical protein ANASTE_00741 [Anaerofustis stercorihominis DSM
           17244]
          Length = 369

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 108/224 (48%), Gaps = 13/224 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK+MT  +  E     K  LN  I + K       + +YLKE    T E  +  ++ 
Sbjct: 57  ASTTKVMTAVLALE-----KGSLNDVIEIKKEWTGIEGTSIYLKEGEKLTLEDLLHGMML 111

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND + +   +I GS   FA +M+ KAK++GM+NT + N +GL D +  TTA D  +L
Sbjct: 112 VSGNDAAVSIACYIGGSIDNFAKMMNKKAKELGMKNTHFTNPNGLPDDDHYTTAYDFTLL 171

Query: 198 GILLRKNFPQYYKYFSIRKF------RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
                KN   + K  +  K+      +   R + N NKLL      +G+KTG+T+ +   
Sbjct: 172 ASYAMKN-ENFVKIINDEKWSMPYEGKANQRTLYNKNKLLKSYEGANGVKTGFTKKARKC 230

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALEL-ITSFLEKKTLK 294
            V + +  +  +V V++      E  +  L++   +F  KK ++
Sbjct: 231 FVLAAKRNNMQVVGVLLHTENHYEESKMFLDMAFNNFTLKKVIE 274


>gi|170760236|ref|YP_001788291.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169407225|gb|ACA55636.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 415

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 125/259 (48%), Gaps = 27/259 (10%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           +++  IL  S+   ++A    +KP         +++D    ++   K  D+P  PAS TK
Sbjct: 7   KILCSILLFSLFFSNVALAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYPPASTTK 66

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT  +  E     + +L+  + + +       SK+Y+ E         +  L+  SAND
Sbjct: 67  IMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLLLASAND 121

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E++SGS   F+  M+ +AK++G  NT + N SGL++    T+ARD AI+   L 
Sbjct: 122 CAEALAEYLSGSLDNFSKDMNKRAKELGCTNTNFVNPSGLYNNKHRTSARDLAIIMNELV 181

Query: 203 KNFPQYYKYFSIRKFRY-------RNRIITNHNKLLNKMHN-----IDGIKTGYTRNSGF 250
           K  P+Y K  +   +           R + N NKL+ K  N      +G KTGYT  S  
Sbjct: 182 KQ-PEYSKIATTLSYNIPPTNKSREKRPLWNENKLIQKHSNFYYKGCEGGKTGYTVQSDH 240

Query: 251 NIVTSLRYKDDP--IVAVV 267
           + V S+  KD+   IVA+V
Sbjct: 241 SYVASVN-KDNHRIIVALV 258


>gi|229133395|ref|ZP_04262223.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BDRD-ST196]
 gi|228650068|gb|EEL06075.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BDRD-ST196]
          Length = 442

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 134/268 (50%), Gaps = 35/268 (13%)

Query: 35  LFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           LF SI++ S ++     P       S+I+++ N  ++   K  DE    AS+TKMM+ Y+
Sbjct: 23  LFCSIVVTSGSASAETVPALDVEAGSAILVEANSGKILYQKNADESLAIASMTKMMSEYL 82

Query: 89  IFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           + E +   KL  + ++ +S    K +  ++ S + L+    +T ++   A++  SAN  +
Sbjct: 83  VHEAVDKGKLKWDQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYEAMVIYSANGAT 142

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--HD-------------KNQIT 189
            A  E I+G E  F  +M++K+K+ GM+N  + N++GL  HD             KN++ 
Sbjct: 143 IALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPEGTTPDEKNKM- 201

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----IITNHNKLLNKM----HNIDGI 240
           +ARD AIL   L ++FP+      I K  ++        +TN N +L  +      +DG+
Sbjct: 202 SARDCAILAQRLIQDFPKILDTAKIPKKTFQKGGKYPIDMTNFNWMLKGLIKQYEGVDGL 261

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G     ++      +++VV+
Sbjct: 262 KTGTTPEAGDCFTGTVEKNGMRLISVVI 289


>gi|225864539|ref|YP_002749917.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           03BB102]
 gi|229184786|ref|ZP_04311979.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
 gi|225790611|gb|ACO30828.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 03BB102]
 gi|228598690|gb|EEK56317.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
          Length = 338

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 129/244 (52%), Gaps = 22/244 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDE--PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-- 110
           S+I+ID N  ++  FK++E      A+L+K+MT YI  E L   K+ L+  + +S     
Sbjct: 37  SAILIDANSGEVV-FKKNEDISIQSATLSKLMTEYIAMEQLHEGKIQLDELVKISNEVFR 95

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A  +P ++  K+KT  T    + AL     N  + A  E I+G+E  F ILM+ KAK++ 
Sbjct: 96  AETSPIQVTSKDKT--TVRDLLHALFLTGNNRSALALAEHIAGNEDNFTILMNEKAKQLK 153

Query: 171 M-QNTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRII 224
           + Q + + NA+G++   +K   TTA D   L   L K+FP        +  +F +++  +
Sbjct: 154 LSQPSPFLNATGMNNDTNKQSNTTAIDVGKLATQLVKDFPNVLNITKLTSYQFTFKDSKV 213

Query: 225 TNHNKL---LNK---MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
            N NK+   LNK   +  +DG++T ++ N  ++ V++ +  D  +++V++    S E + 
Sbjct: 214 FNTNKMIYSLNKNINLQGVDGLQTSFSTNGNYSFVSTAQRGDTRLISVILD---SNEENS 270

Query: 279 KALE 282
             +E
Sbjct: 271 TFIE 274


>gi|168205928|ref|ZP_02631933.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens E str.
           JGS1987]
 gi|170662569|gb|EDT15252.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens E str.
           JGS1987]
          Length = 444

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 114/224 (50%), Gaps = 20/224 (8%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +E   PAS TK MT  +  E     K +LN  + + K       +++ L+E   +T E+ 
Sbjct: 61  NEKLAPASTTKTMTALLTVE-----KANLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEEL 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + AL+ +SAND + A  E ISGSE+KFA LM+ +A+++G +NT + NASGL +++ +TT 
Sbjct: 116 LNALLIQSANDAAVALAEHISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEEDHMTTP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT-------NHNKLLNKMH-----NIDG 239
            D A++     KN P   +      +     I++       N+N+L+++       +I  
Sbjct: 176 YDLALIMNAASKN-PIIDEITKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFC 234

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE--RDQKAL 281
            KTGYT  S      + +  D  ++  ++G  T  +   D K L
Sbjct: 235 NKTGYTTKSKHTFTCAAKRGDRKLILTLLGYDTKDQYYEDTKNL 278


>gi|300853932|ref|YP_003778916.1| D-alanyl-D-alanine carboxypeptidase [Clostridium ljungdahlii DSM
           13528]
 gi|300434047|gb|ADK13814.1| D-alanyl-D-alanine carboxypeptidase precursor [Clostridium
           ljungdahlii DSM 13528]
          Length = 408

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 124/254 (48%), Gaps = 26/254 (10%)

Query: 34  ILFLSIIMISMASELHAK---PKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTL 86
           +LFL I   +    +HAK   P  S+   +++D    Q+   K  +  YP AS TK+MT 
Sbjct: 9   LLFLLICSNNPYGVVHAKEMPPPVSADGAVILDAATGQLLYSKNPDTAYPPASTTKIMTA 68

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            +  E       +LN ++ + K     + +++ L E    T +  +  L+  S ND + A
Sbjct: 69  LLTLE-----NTNLNDKVIIGKNPPNVDGTRVGLCEGEQLTVKDLLYGLLLASDNDCAEA 123

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E I G+  KF + M+ +AK++G +NT + N +GL D++  T+ARD A++   L K+ P
Sbjct: 124 LAEHIGGTMDKFVVKMNKRAKELGAKNTNFVNPTGLFDESHKTSARDLALMMRALSKH-P 182

Query: 207 QYYKYFSIRKFRY-------RNRIITNHNKLLNKM-----HNIDGIKTGYTRNSGFNIV- 253
           +Y K  +   +         + R + N NKL+ K          G KTGYT  S  + V 
Sbjct: 183 EYSKIATTISYTIPATNKSPQPREVWNENKLIQKQSTYYYSGCLGGKTGYTVQSFHSYVS 242

Query: 254 TSLRYKDDPIVAVV 267
           T+ R     IVA++
Sbjct: 243 TATRNGQQLIVALI 256


>gi|158320769|ref|YP_001513276.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii
           OhILAs]
 gi|158140968|gb|ABW19280.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii
           OhILAs]
          Length = 442

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 29/220 (13%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           E  YPAS TK+MT  ++ E       +L+ ++ +         S +YL +   FT  + +
Sbjct: 57  EKAYPASTTKVMTAVMVLE-----NANLDDKVTIDYDLYVDG-SSMYLLKGESFTVRELL 110

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
            AL+ RSAND + A    I+GS   F   M+ +AK++G  NT + N  GL D N +TTA 
Sbjct: 111 QALLIRSANDAAEALAIHIAGSVDSFVEKMNARAKELGAFNTNFTNPHGLPDTNHVTTAY 170

Query: 193 DQAILG------ILLRKNF-------------PQYYKYFSIRKFRY----RNRIITNHNK 229
           D A++        L R+               P+   Y +  KF +     N ++ N + 
Sbjct: 171 DLAMISKHAMTFDLFRETVKTEMLILEPTEQTPETRYYRNTNKFLWGTGSANHMLYNGSY 230

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           +  K   IDG+KTGYT  +G  +++S    D  +++VV+G
Sbjct: 231 INIKYDIIDGLKTGYTGAAGNCLISSSFQNDHRLISVVLG 270


>gi|148380930|ref|YP_001255471.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A str. ATCC 3502]
 gi|153933353|ref|YP_001385299.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936108|ref|YP_001388707.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A str. Hall]
 gi|148290414|emb|CAL84541.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str.
           ATCC 3502]
 gi|152929397|gb|ABS34897.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932022|gb|ABS37521.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A str. Hall]
          Length = 415

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 122/258 (47%), Gaps = 24/258 (9%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           +++  IL  S+   ++A    +KP         +++D    ++   K  D+P  PAS TK
Sbjct: 7   KILCSILLFSLFFSNVALAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYPPASTTK 66

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT  +  E     + +L+  + + +       SK+Y+ E         +  L+  SAND
Sbjct: 67  IMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLLLASAND 121

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E++SGS   F+  M+ +AK++G  NT + N SGL++    T+ARD AI+   L 
Sbjct: 122 CAEALAEYLSGSLDNFSKDMNKRAKELGCTNTNFVNPSGLYNDKHRTSARDLAIIMNELV 181

Query: 203 KNFPQYYKYFSIRKFRY-------RNRIITNHNKLLNKMHN-----IDGIKTGYTRNSGF 250
           K  P+Y K  +   +           R + N NKL+ K  N      +G KTGYT  S  
Sbjct: 182 KQ-PEYSKIATTLSYNILPTNKSKEKRPLWNENKLIQKHSNFYYKGCEGGKTGYTVQSDH 240

Query: 251 NIVTSLRYKDDPIVAVVM 268
           + V S+   +  I+  ++
Sbjct: 241 SYVASVNKNNHRIIVALV 258


>gi|266618868|ref|ZP_06111806.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf]
 gi|263528518|gb|EEZ28341.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf]
          Length = 415

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 122/258 (47%), Gaps = 24/258 (9%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           +++  IL  S+   ++A    +KP         +++D    ++   K  D+P  PAS TK
Sbjct: 7   KILCSILLFSLFFSNVALAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYPPASTTK 66

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT  +  E     + +L+  + + +       SK+Y+ E         +  L+  SAND
Sbjct: 67  IMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLLLASAND 121

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E++SGS   F+  M+ +AK++G  NT + N SGL++    T+ARD AI+   L 
Sbjct: 122 CAEALAEYLSGSLDNFSKDMNKRAKELGCTNTNFVNPSGLYNNKHRTSARDLAIIMNELV 181

Query: 203 KNFPQYYKYFSIRKFRY-------RNRIITNHNKLLNKMHN-----IDGIKTGYTRNSGF 250
           K  P+Y K  +   +           R + N NKL+ K  N      +G KTGYT  S  
Sbjct: 182 KQ-PEYSKIATTLSYNIPPTNKSKEKRPLWNENKLIQKHSNFYYKGCEGGKTGYTVQSDH 240

Query: 251 NIVTSLRYKDDPIVAVVM 268
           + V S+   +  I+  ++
Sbjct: 241 SYVASVNKNNHRIIVALV 258


>gi|255658320|ref|ZP_05403729.1| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM
           20544]
 gi|260849639|gb|EEX69646.1| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM
           20544]
          Length = 288

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 121/274 (44%), Gaps = 41/274 (14%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQS 95
            S + ++ A ++ A    ++IVID    Q+   K  + R YPAS+TKMMT  +  E    
Sbjct: 21  WSAVAMAAAPDITAD---AAIVIDEATGQVLYEKNADKREYPASMTKMMTCILALEKSSP 77

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA-LITRSANDVSTAFGEFISGS 154
            +L     + VS  AA    ++LY     Y      IL  ++  S N  +TA GE + G 
Sbjct: 78  DQL-----VTVSANAADVECTRLY---PGYTLRMADILQQMMMISDNGAATAVGEAVGGD 129

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN---------- 204
           E  FA +M+ KA++IG  +T + N +G+ D +  +TARD   +      N          
Sbjct: 130 EASFAAMMNAKAQEIGATHTHFVNMNGMPDADHYSTARDMGKIAAYAMHNDAFRRIVGTK 189

Query: 205 -------FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
                   PQ +  + I           N N+LL+      GIKTG+T  +   +  + +
Sbjct: 190 AKNIYYIVPQGHTTYCI-----------NTNELLDTYEGCTGIKTGWTSAARGCLSAAAK 238

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
                ++AVVM     + R  +A  L+    E++
Sbjct: 239 RDGKELIAVVMHSDDDETRFSEAAALLDYGFEQE 272


>gi|219854143|ref|YP_002471265.1| hypothetical protein CKR_0800 [Clostridium kluyveri NBRC 12016]
 gi|219567867|dbj|BAH05851.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 415

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 106/208 (50%), Gaps = 20/208 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D    ++   K  +  YP AS TK+MT  +  E       +LN ++ V K     
Sbjct: 43  SAVILDATTGEVLYAKNPDSAYPPASTTKIMTALLTLE-----NTNLNDKVTVGKNPPLV 97

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI-SGSEKKFAILMSNKAKKIGMQ 172
           + +++ L E    T +  +  L+  SAND + A  E I +GS +KFAI M+ KA ++G  
Sbjct: 98  DGTRIGLYEGEELTVKDLLYGLLLASANDCAEALAEHIGNGSSEKFAIEMNKKAHELGAY 157

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK-----YFSIRKFR--YRNRIIT 225
           NT + N SGL D+   T+A+D A++   L KN P+Y K     Y++I       + R + 
Sbjct: 158 NTNFVNPSGLFDEKHKTSAKDLALIMKELCKN-PEYSKIATTLYYTIPPTNKSPKERGVW 216

Query: 226 NHNKLLNK-----MHNIDGIKTGYTRNS 248
           N NKL+           +G KTGYT  S
Sbjct: 217 NENKLIQPNSTYYYSGCEGGKTGYTTQS 244


>gi|253579887|ref|ZP_04857155.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848886|gb|EES76848.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 472

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 114/245 (46%), Gaps = 21/245 (8%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-- 111
           ++IV++ + N +   K  D+P YPAS  K+MT  +  E        L+ Q+ ++ T    
Sbjct: 114 AAIVMETSTNTVLYSKNADQPLYPASAVKIMTCLVALE-----NSSLDEQVTMTATGVSG 168

Query: 112 -TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            T   + +  +    FT EQ + A++  SAND++    E + GS   F   M+ +A+++G
Sbjct: 169 VTDGGANISSQLDEVFTMEQCLYAIMVASANDIALQVAEHVGGSVDAFVQTMNTRAQELG 228

Query: 171 MQNTIYKNASGLHDKNQITTARDQAIL--GILLRKNFPQYYKYFS----IRKFRYRNRII 224
             NT++ N +GL D+NQ  TA D A++    +    F       S            R++
Sbjct: 229 CTNTVFTNPTGLPDENQHITAHDMALIMEAAMANDTFRTIAATTSYTLPATNVSGGERVL 288

Query: 225 TNHNKLLNKMHN-----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           TN+  ++N   +       G K GYT  SG  +V      +  +V +V+    S   D +
Sbjct: 289 TNNFTMINSTSDGYYKPCIGGKEGYTEASGSTLVCEASKNNMKLVCIVLN-GASGVTDDE 347

Query: 280 ALELI 284
           A+ L+
Sbjct: 348 AIALL 352


>gi|126649987|ref|ZP_01722220.1| hypothetical protein BB14905_01915 [Bacillus sp. B14905]
 gi|126593159|gb|EAZ87121.1| hypothetical protein BB14905_01915 [Bacillus sp. B14905]
          Length = 289

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 117/238 (49%), Gaps = 16/238 (6%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQS--KKLHLNTQIPVSKTAA 111
           ++I++++N+N++   K  +E  YPASLTKMMT+ +  E + +  +++ L   I      A
Sbjct: 41  NAILVNLNENKVLIDKNSEEVIYPASLTKMMTVLVAIEQIPNLQEEIVLGNNIFNHLYEA 100

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + +     EK   T E  +   +  S  + S    E+I+GSE+KF  LM+ KA+++GM
Sbjct: 101 NASLAGFLPNEK--LTLEDLLYGSMLPSGAEASIGLAEYIAGSERKFVNLMNEKAQQLGM 158

Query: 172 QNTIYKNASGLHDKNQITTARDQAIL--GILLRKNFPQYY--KYFSIRKFRYRNRIITNH 227
           +NT + N +GLH     TT +D ++L    L    F Q Y  + +SI+        IT  
Sbjct: 159 ENTHFMNTTGLHHTEHYTTVKDMSLLLQYALTNDEFRQVYTAERYSIKPTNRHPEGITFT 218

Query: 228 NKLLNKM-------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           NK+   M         I G KTGYT ++G  + +         + V +G   +   +Q
Sbjct: 219 NKMFQNMTTRALPGGEILGGKTGYTDDAGLCLASLATINGQEYILVTVGAEGNSRTEQ 276


>gi|15895327|ref|NP_348676.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum
           ATCC 824]
 gi|15025043|gb|AAK80016.1|AE007708_12 D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum
           ATCC 824]
 gi|325509472|gb|ADZ21108.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum EA
           2018]
          Length = 351

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 130/274 (47%), Gaps = 10/274 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I R+I L   +  L+    + A +L+   +  +I ID N   +   K  +   P AS TK
Sbjct: 3   IYRSIVLALIVCILTPATFAKADKLNLNAR-CAIAIDSNTKMILYEKNADMIVPMASTTK 61

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT  +  +Y      +L+ +  +SK AA+   SK+  K     T  + +  L+ RS ND
Sbjct: 62  IMTSLVAIKYG-----NLDKKFTISKKAASIRGSKVGYKAGEEITLRELLYGLMLRSGND 116

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            +    E I+G+ +KFA LM+  A KIG  N+ ++   GL       TA D A +  + +
Sbjct: 117 AAICIAEGIAGNTEKFADLMNEYAYKIGAFNSHFQTPHGLDKDLHYCTAYDLAFITSVAK 176

Query: 203 KN--FPQYYKYFSIRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           +N  F        +   +Y   R   N NK+L ++   DG+KTGYT N+G  +V+S++  
Sbjct: 177 ENKVFNDIVSSKDVGSGQYGFTRSYHNINKILYQIPGADGVKTGYTGNAGKCLVSSVKMN 236

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
              ++ VV+      +  ++  E +    E K +
Sbjct: 237 GHDVIFVVLNCTPRWKETKRMYEYVKKNYEYKKM 270


>gi|229161459|ref|ZP_04289440.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
 gi|228621996|gb|EEK78841.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
          Length = 338

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 136/255 (53%), Gaps = 29/255 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S+I+ID +  ++   K +E     A+L+K+MT YI+ E L   K+ L+  + +S     A
Sbjct: 37  SAILIDASSGEVIYKKNEETLIQSATLSKLMTEYIVLEQLNDGKIQLDESVKISNEVFQA 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             +P ++  K+KT  T    + AL+    N  + A  E ISG+E  F  LM+ KAK++ +
Sbjct: 97  ETSPIQVTSKDKT--TVRDLLHALLLTGNNRSALALAEHISGNEDSFTTLMNEKAKQLQL 154

Query: 172 -QNTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKY-------FSIRKFRY- 219
            Q++ + N++G++   +K   TTA D A L   L K+FP            FS + F+  
Sbjct: 155 SQSSPFLNSTGVNNDTNKQPSTTALDVAKLATQLVKDFPDVLNITKLTSYQFSFKDFQVF 214

Query: 220 -RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
             N++I + NK + K+  +DG++T ++ N  ++ V++ +  +  +++V++      E D+
Sbjct: 215 NTNKMIYSLNKDI-KLQGVDGLQTSFSTNGIYSFVSTAKLGNTRLISVIL------EADE 267

Query: 279 KALELITSFLEKKTL 293
           +     ++F+E K L
Sbjct: 268 EN----STFIETKKL 278


>gi|20807406|ref|NP_622577.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20515927|gb|AAM24181.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 416

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 16/226 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++++D    Q+   K    R YPAS TK++T  I  E     K  L+  +  S+     
Sbjct: 35  TAVLMDFTTGQVLYDKNMHKRMYPASTTKILTAIIALE-----KGKLDDVVTCSENVTKI 89

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             + ++L      T EQ + AL+  SAND + A  E I GS + FA +M+ KA++IG  N
Sbjct: 90  EGNSIFLSPGEQLTLEQLLYALMLESANDAAIAIAEHIGGSVENFAKMMNEKAREIGAYN 149

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFP-------QYYKYFSIRKF-RYRNRIIT 225
           + + N +GL D+N  +T  D A +     +N          +Y+     KF + R+  I+
Sbjct: 150 SHFVNPNGLPDENHYSTPYDMAQIARYAMQNAEFRKIVSTLHYQIPPTNKFDKPRDLWIS 209

Query: 226 NHNKLLNKMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           N     ++ H    DG+KTGYT  +G  +V S       +++V+MG
Sbjct: 210 NRLLKPSRFHYEGADGVKTGYTVAAGQVLVASATRDGHRLISVIMG 255


>gi|269122125|ref|YP_003310302.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sebaldella
           termitidis ATCC 33386]
 gi|268616003|gb|ACZ10371.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sebaldella
           termitidis ATCC 33386]
          Length = 357

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 10/224 (4%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           E R  AS+TK+MT+ +  + + +K++ L+  + +S TA ++ P  + +     FT E+ +
Sbjct: 41  EVRPLASMTKVMTILLTLDKVNAKEISLDDNVTISYTA-SKVPYGVKMNAGETFTVEELL 99

Query: 133 LALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
            A   RS+N+ + A  E++S G    F   M+ +A+ +G+ +  Y    GL   N   T 
Sbjct: 100 KATAIRSSNNAAYALAEYVSHGDVYDFVDKMNERARSMGLDSLRYCTPHGLPPGNT-GTC 158

Query: 192 RDQA----ILGILLRK-NFPQYYKYFSIRKFRYRNRIIT--NHNKLLNKMHNIDGIKTGY 244
            DQ     I  + +    +P+Y K         ++  I     N LL K+  +DG+KTGY
Sbjct: 159 MDQGNAYDIYKLAMTAIQYPEYMKIADKSSDYIKDGTIQLKATNNLLGKVEGVDGLKTGY 218

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            + +G NIV +       ++AVVMG   S+ RD    + I SF 
Sbjct: 219 HKAAGSNIVLTAERDGLRMIAVVMGSEKSKNRDTVGADEINSFF 262


>gi|323702413|ref|ZP_08114077.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532552|gb|EGB22427.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 400

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 105/219 (47%), Gaps = 11/219 (5%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++I++D    Q+   K    R P AS TK+MT  +  E    K +       VSK AA  
Sbjct: 63  AAILMDATTGQVLYEKNAHKRRPIASTTKIMTALLAIECGNLKSV-----ATVSKHAAGT 117

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S +YL+     T E  +   +  S ND   A  E I+G E+ F  LM+ KA  +G +N
Sbjct: 118 EGSSIYLRAGEKLTLEHLLYGALMHSGNDACVAIAEHIAGKEELFVNLMNYKAYLLGARN 177

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN----RIITNHNK 229
           T + N +GL     ++TA D A++     KN P + +  + R  + +     R + N N+
Sbjct: 178 THFANTNGLPHDQHLSTAYDLALITRHALKN-PVFKQIVATRTHKIKGPQGLRYLANTNQ 236

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +L      +G+KTG T  +G  +V+S       ++AVV+
Sbjct: 237 MLWSYQGANGVKTGTTNAAGKCLVSSATRDGRLLIAVVL 275


>gi|153855278|ref|ZP_01996444.1| hypothetical protein DORLON_02458 [Dorea longicatena DSM 13814]
 gi|149752277|gb|EDM62208.1| hypothetical protein DORLON_02458 [Dorea longicatena DSM 13814]
          Length = 452

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 125/245 (51%), Gaps = 22/245 (8%)

Query: 46  SELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +EL+A+   S++++D +  + + G   D  R  AS TK+MT  +  E L+    H +  I
Sbjct: 81  AELYAR---SAVLMDADSGRVLFGKDTDVVRPMASTTKIMTCILALESLRE---HPDQTI 134

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
            VS  AA+Q    L +++   F  +  + +L+  S ND + A  E I+GS ++FA  M+ 
Sbjct: 135 EVSDQAASQPKVHLGMQKGEVFYIKDLLYSLMLESHNDSAVAVAEGIAGSVEEFAKEMNA 194

Query: 165 KAKKIGMQNTIYKNASGLHDKNQ----ITTARDQAIL---GILLRKNFPQYYKYFSIRKF 217
           KA +IG +NT +   +GL  +++     TTA D A +    I+       + +    +++
Sbjct: 195 KAAEIGCKNTHFITPNGLDAEDEGGVHSTTAEDLAKIMRYCIMTSGEKETFLEVTRTKEY 254

Query: 218 RY----RNRIIT--NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM--G 269
           ++    R R  +  NHN  L+ M      KTG+T ++G+  V SLR+ D   +  ++  G
Sbjct: 255 QFQDADRKRTFSCHNHNAFLDMMDGALSGKTGFTADAGYCYVGSLRWDDRTFIVALLACG 314

Query: 270 MPTSQ 274
            P ++
Sbjct: 315 WPNNK 319


>gi|153953521|ref|YP_001394286.1| DacA1 [Clostridium kluyveri DSM 555]
 gi|146346402|gb|EDK32938.1| DacA1 [Clostridium kluyveri DSM 555]
          Length = 407

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 106/208 (50%), Gaps = 20/208 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D    ++   K  +  YP AS TK+MT  +  E       +LN ++ V K     
Sbjct: 35  SAVILDATTGEVLYAKNPDSAYPPASTTKIMTALLTLE-----NTNLNDKVTVGKNPPLV 89

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI-SGSEKKFAILMSNKAKKIGMQ 172
           + +++ L E    T +  +  L+  SAND + A  E I +GS +KFAI M+ KA ++G  
Sbjct: 90  DGTRIGLYEGEELTVKDLLYGLLLASANDCAEALAEHIGNGSSEKFAIEMNKKAHELGAY 149

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK-----YFSIRKFR--YRNRIIT 225
           NT + N SGL D+   T+A+D A++   L KN P+Y K     Y++I       + R + 
Sbjct: 150 NTNFVNPSGLFDEKHKTSAKDLALIMKELCKN-PEYSKIATTLYYTIPPTNKSPKERGVW 208

Query: 226 NHNKLLNK-----MHNIDGIKTGYTRNS 248
           N NKL+           +G KTGYT  S
Sbjct: 209 NENKLIQPNSTYYYSGCEGGKTGYTTQS 236


>gi|219669686|ref|YP_002460121.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
           hafniense DCB-2]
 gi|219539946|gb|ACL21685.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
           hafniense DCB-2]
          Length = 379

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 24/234 (10%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           R PAS TK++T  +  E  +  +L     + VS+ AA    S ++L         + +  
Sbjct: 68  RPPASTTKILTAILGLELGKPDEL-----VVVSEKAAAVGESTIHLDPGEKILLYELVTG 122

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            + +S ND   A  E I+G+E+ F  LM+ KA  +G +NT ++N +GL  KN ++TA D 
Sbjct: 123 AMVKSGNDACVAIAEQIAGTEEDFVRLMNQKAFLLGAKNTHFENTNGLPSKNHVSTAYD- 181

Query: 195 AILGILLRKNFPQYYKYFSIRKFR-----------YRNRIITNHNKLLNKMHNIDGIKTG 243
             L ++ R    Q   + SI + +           + N  + N NKLL      DG+KTG
Sbjct: 182 --LALMARYGL-QIPAFTSITRLKETEIHFIEPDFFMN--LRNTNKLLWNYPYTDGVKTG 236

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQ 297
            T  +G  +V +       ++AVV+  P      QK LE    F E +TL + Q
Sbjct: 237 TTTAAGKCLVAAATKDGRQLIAVVLHAPDRFGDAQKLLEW--GFNETETLNYVQ 288


>gi|167630369|ref|YP_001680868.1| d-alanyl-d-alanine carboxypeptidase [Heliobacterium modesticaldum
           Ice1]
 gi|167593109|gb|ABZ84857.1| d-alanyl-d-alanine carboxypeptidase [Heliobacterium modesticaldum
           Ice1]
          Length = 259

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 111/222 (50%), Gaps = 16/222 (7%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++++D    ++   +Q  +PR PAS TK++T  + FE+       L  ++ +S+ A + 
Sbjct: 25  AAVLMDAETGRILFERQAHQPRPPASTTKIVTALLGFEFGD-----LEDEVIISQKAGST 79

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             + + L           +   + RS ND   A  E I+GSE+ F + M+ K++ IG ++
Sbjct: 80  GEASINLFPGERVALGDLLTGALVRSGNDACVAIAEHIAGSEEFFTLWMTAKSRIIGGRS 139

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYRNR-----IITN 226
           + + N +GL  K+  ++A D   L ++ R+    P++      R+   +NR      I N
Sbjct: 140 SQFFNTNGLPHKHHWSSAYD---LAVVTREAMRRPEFAATVRSRRATLKNRQGWPKEIKN 196

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            N LL      DG+KTG TR +G  +V S    +  ++AVV+
Sbjct: 197 TNALLWSYPFADGVKTGTTRAAGACLVASATKNNRQLIAVVL 238


>gi|253701878|ref|YP_003023067.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacter sp.
           M21]
 gi|251776728|gb|ACT19309.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacter sp.
           M21]
          Length = 276

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 116/244 (47%), Gaps = 19/244 (7%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYL 93
           ILF        AS   A P  S+ +I VN +          R PASLTK+MT  I+ E  
Sbjct: 5   ILFAVAYYTDAASSPFAHPP-SAYLIQVNGHIYKERNAHIRRPPASLTKIMTALIVME-- 61

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
              +  L+  + VS+ AA +  S++ L+     T    + A +  SAND   A  +   G
Sbjct: 62  ---RCKLDEVVVVSRGAARETGSRIGLRRGEKLTVRDLLAATLMASANDACRALADHACG 118

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI-TTARDQAILGILLRKNF--PQYYK 210
           +++ F + M+ +A+ + + NT + NA G HD   + TTA D   L +L  K    P + +
Sbjct: 119 NQRDFVVQMNARARALQLPNTRFTNACG-HDSAGLYTTAHD---LALLTEKAMQKPLFAE 174

Query: 211 YFSIRKFRYR------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
             + ++ R R      +  + N N+L+ +     G+KTG T N+G  +V     ++  ++
Sbjct: 175 LVARKEMRIRTLNSKRSYYLRNKNRLIGRYPGAIGVKTGTTPNAGQCLVAIAEREERKVL 234

Query: 265 AVVM 268
            V+M
Sbjct: 235 LVIM 238


>gi|254302479|ref|ZP_04969837.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148322671|gb|EDK87921.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 426

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 126/264 (47%), Gaps = 10/264 (3%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E      + ++++   K  +   K  +  YP AS+TKMM+L + F+ + +  + L+  + 
Sbjct: 164 EWELPDNFRAVIVGDTKGNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGNISLSDSVR 223

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI-SGSEKKFAILMSN 164
           +SK       S + LK    F  E  I A    SAN+ + A  E++ +GS   F   M+ 
Sbjct: 224 ISKNPLKYGGSGIPLKAGQIFILEDLIKASAVYSANNATYAIAEYVGNGSVFGFVAKMNR 283

Query: 165 KAKKIGMQNTI-YKNASGLHDKNQITTARDQAILGIL-LRKNFPQYYKYFSIRKFR---- 218
           K K++G+QN I Y   +GL  +       +    GI  L     +Y KY  I   +    
Sbjct: 284 KLKELGLQNEIRYHTPAGLPTRVTKQPMDEGTARGIYKLSIEALKYKKYIEIAGIKKTKI 343

Query: 219 YRNRI-ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           Y  +I I N N L+ + + + GIKTG+ + + +NI  + +++D  ++ VVMG  T + RD
Sbjct: 344 YNEKISIRNRNHLIGE-NGVYGIKTGFHKEAKYNIAVASKFEDTDVIIVVMGGETYKTRD 402

Query: 278 QKALELITSFLEKKTLKHQQTHRK 301
              L ++       T+K+    RK
Sbjct: 403 GIVLSVLDILNNNYTVKNGLIKRK 426


>gi|138895855|ref|YP_001126308.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134267368|gb|ABO67563.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 446

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 128/261 (49%), Gaps = 25/261 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK---PKYSSIVIDVNKNQMTGFKQDE--PRYPA 78
           ++R  +L+  I   + IM  +  +LHA       S+I+I+ +  ++  F +D    R  A
Sbjct: 66  MKRWKRLVWLIALTAGIMSCLPGKLHAMNGVSAKSAILIEQHSGRIL-FAKDAHTKRRIA 124

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           S+TK+MT  +  E   S KL  +  + VS  A     S +YL++         +  L+ R
Sbjct: 125 SITKIMTAILAIE---SGKL--DDTVTVSARAVRTEGSSIYLRQGEKMKLRDLVYGLMLR 179

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAIL 197
           S ND + A  E + GS + F  LM+ KA +IGM++T + N  GL D ++  +TA D A+L
Sbjct: 180 SGNDAAVAIAEHVGGSVEGFVFLMNEKAAEIGMRDTEFANPHGLDDAESHYSTAYDMALL 239

Query: 198 GILLRKNFPQYYKYFSIRKFRYR---------NRIITNHNKLLNKMHN-IDGIKTGYTRN 247
                KN  + ++  S  K  YR          R+  N NKLL  ++    G KTGYT+ 
Sbjct: 240 MQYAMKN--KEFRRISGTKV-YRAPAPPGEDGARVWRNKNKLLTSLYEYCTGGKTGYTKR 296

Query: 248 SGFNIVTSLRYKDDPIVAVVM 268
           +   +VT+       +VAV +
Sbjct: 297 AHRTLVTTASKDGIDLVAVTL 317


>gi|317056264|ref|YP_004104731.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus
           albus 7]
 gi|315448533|gb|ADU22097.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus
           albus 7]
          Length = 407

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 109/236 (46%), Gaps = 29/236 (12%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEY---LQSK-KLHLNTQIPVSKT 109
           + I++D + N+ + G K D+  YPASLTK+MTL +  E    +Q+K K       P++K 
Sbjct: 96  TGILLDCDSNEILAGLKYDQRIYPASLTKLMTLLVAVENIDDMQAKYKFTKKDLAPLTK- 154

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
              +N S          T E  + A I  S  D +      I+G+EK F  LM++K   +
Sbjct: 155 ---ENASCAGFVAGDEVTMEDLLYAAILPSGADGTLGLANAIAGNEKNFVKLMNDKVADL 211

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF------RYRNRI 223
           G+ NT + NASGLH K   TTA+D A++     +N     K     K+       Y+  I
Sbjct: 212 GLANTNFANASGLHHKQHYTTAQDMAVITKACMEN-ETCRKVLCTEKWTTKPAKEYKEGI 270

Query: 224 ITN---HNKLLNKMHNID----------GIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
                 H++      + D          G KTG+T  +G+ + T + +K    +A+
Sbjct: 271 ELESIFHSRFGGYFVDADQDGAEDAKLLGGKTGFTDEAGYTLATVVEFKGKEYIAI 326


>gi|315038949|ref|YP_004032517.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus amylovorus GRL
           1112]
 gi|312277082|gb|ADQ59722.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus amylovorus GRL
           1112]
 gi|327184084|gb|AEA32531.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus amylovorus GRL
           1118]
          Length = 432

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 119/244 (48%), Gaps = 29/244 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKT 109
           S+I ID +  Q+   K  +   P AS+TK++T+Y+  + +++KKL  + ++    P+ K 
Sbjct: 50  SAIAIDSDSGQILYAKNADKTLPIASMTKLVTVYLTLQAIKNKKLSWDQKVKPTAPIVKV 109

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A     S + LK    +T  Q   A +  SAN  +   G+ I+GS+K F   M  + KK 
Sbjct: 110 ANNTEYSNVPLKMGHSYTIRQLYQATLIESANGAAMLLGQTIAGSQKAFINQMRAQVKKW 169

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++     A GL + N                 +A+D AI+G  L K+FP+      I 
Sbjct: 170 GIEDAKIYTACGLPNGNLGKDAYPGVNKNDENTMSAKDMAIIGQNLIKDFPEVLDTTKIA 229

Query: 216 --KFRYRNRI--ITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              F+  N++  + N N +L      ++ + +DG+KTG T  +G   + ++ +    ++ 
Sbjct: 230 HLNFKDGNKVTKMANFNWMLKGLSQYDEAYPVDGLKTGTTDAAGACFIGTVEHSGARLIT 289

Query: 266 VVMG 269
           VVMG
Sbjct: 290 VVMG 293


>gi|331083423|ref|ZP_08332535.1| hypothetical protein HMPREF0992_01459 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404116|gb|EGG83664.1| hypothetical protein HMPREF0992_01459 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 478

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 119/242 (49%), Gaps = 20/242 (8%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           ++IV+D++  ++   K  DE R PAS TK++T  +  E     K+   TQI  +      
Sbjct: 75  TAIVMDMDTEEILYAKGIDEKRAPASTTKILTAMLAIE-----KVPFETQITFTDEVNNI 129

Query: 113 -QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               + + +K     T +    A++  SAN+VS+   E+I  +   F  +M+ +AK++G 
Sbjct: 130 EAGSTHIGIKPGETLTMKDCAYAILLASANEVSSGVAEYIGTTVPAFVDMMNQRAKELGC 189

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYK--YFSIRKFRYRN--RIIT 225
            NT + NA+GL+D+N  TTARD AI+     +N  F +  K  Y+ + K    +  R + 
Sbjct: 190 TNTHFVNANGLYDENHYTTARDLAIIAKAAFQNETFREVVKTPYYIVPKTNITDEERWLN 249

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG--MPTSQERDQK 279
           NH+K++           G KTGYT  +G  +VT        +V  ++      +Q  D K
Sbjct: 250 NHHKMILQGSEYYEGCLGGKTGYTEKAGNTLVTYAERNGRKLVCALLADVNVVAQYTDTK 309

Query: 280 AL 281
           AL
Sbjct: 310 AL 311


>gi|323490220|ref|ZP_08095437.1| D-alanyl-D-alanine carboxypeptidase [Planococcus donghaensis
           MPA1U2]
 gi|323396116|gb|EGA88945.1| D-alanyl-D-alanine carboxypeptidase [Planococcus donghaensis
           MPA1U2]
          Length = 452

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 121/249 (48%), Gaps = 30/249 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           ++I++D    ++   K  E P   AS+TKMMT Y++FE ++  K+  + +  V+    + 
Sbjct: 45  AAILVDAESGKILYEKNAEKPLGVASMTKMMTEYLLFEAIEEGKVAWDQEYQVTDYTYRI 104

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +     S +  +E   +T ++   A+   SAN  +    E I+G+E +F  LM+ KAK++
Sbjct: 105 SQDMRLSNVPFREDGSYTIKEMYEAMAIFSANAATIGIAETIAGTESEFVELMNEKAKEM 164

Query: 170 GMQNTIYKNASGLH---------------DKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           G++ T + N++GL                D+N I  AR  A L  +L  ++P+  +   I
Sbjct: 165 GLEETTFVNSTGLSNSSLMGMHPEGTKETDEN-IMPARAVAKLTKILLDDYPEVLETTKI 223

Query: 215 RKFRYRNRI-----ITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
               +R        + N N +L  +      +DG+KTG T  +G++   + +  D   +A
Sbjct: 224 PLKMFREGTSDETRMENWNSMLPGLIYEYEGVDGLKTGSTDFAGYSFAGTAKRDDTRFIA 283

Query: 266 VVMGMPTSQ 274
           VVMG   S+
Sbjct: 284 VVMGAVDSE 292


>gi|322807302|emb|CBZ04876.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum H04402
           065]
          Length = 415

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 122/258 (47%), Gaps = 24/258 (9%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           +++  +L  S+   ++A    +KP         +++D    ++   K  D+P  PAS TK
Sbjct: 7   KILCSVLLFSLFFSNVALAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYPPASTTK 66

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT  +  E     + +L+  + + +       SK+Y+ E         +  L+  SAND
Sbjct: 67  IMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLLLASAND 121

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E++SGS   F+  M+ +AK++G  NT + N SGL++    T+ARD AI+   L 
Sbjct: 122 CAEALAEYLSGSLDNFSKDMNKRAKELGCTNTNFVNPSGLYNDKHRTSARDLAIIMNELV 181

Query: 203 KNFPQYYKYFSIRKFRY-------RNRIITNHNKLLNKMHN-----IDGIKTGYTRNSGF 250
           K  P+Y K  +   +           R + N NKL+ K  N      +G KTGYT  S  
Sbjct: 182 KQ-PEYSKIATTLSYNIPPTNKSKEKRPLWNENKLIQKHSNFYYKGCEGGKTGYTVQSDH 240

Query: 251 NIVTSLRYKDDPIVAVVM 268
           + V S+   +  I+  ++
Sbjct: 241 SYVASVNKNNHRIIVALV 258


>gi|260588887|ref|ZP_05854800.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
           20583]
 gi|260540666|gb|EEX21235.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
           20583]
          Length = 478

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 119/242 (49%), Gaps = 20/242 (8%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           ++IV+D++  ++   K  DE R PAS TK++T  +  E     K+   TQI  +      
Sbjct: 75  TAIVMDMDTEEILYAKGIDEKRAPASTTKILTAMLAIE-----KVPFETQITFTDEVNNI 129

Query: 113 -QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               + + +K     T +    A++  SAN+VS+   E+I  +   F  +M+ +AK++G 
Sbjct: 130 EAGSTHIGIKPGETLTMKDCAYAILLASANEVSSGVAEYIGTTVPAFVDMMNQRAKELGC 189

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYK--YFSIRKFRYRN--RIIT 225
            NT + NA+GL+D+N  TTARD AI+     +N  F +  K  Y+ + K    +  R + 
Sbjct: 190 TNTHFVNANGLYDENHYTTARDLAIIAKAAFQNETFREVVKTPYYIVPKTNITDEERWLN 249

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG--MPTSQERDQK 279
           NH+K++           G KTGYT  +G  +VT        +V  ++      +Q  D K
Sbjct: 250 NHHKMILQGSEYYEGCLGGKTGYTEKAGNTLVTYAERNGRKLVCALLADVNVVAQYTDTK 309

Query: 280 AL 281
           AL
Sbjct: 310 AL 311


>gi|168215748|ref|ZP_02641373.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens NCTC
           8239]
 gi|182382096|gb|EDT79575.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens NCTC
           8239]
          Length = 444

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 113/224 (50%), Gaps = 20/224 (8%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +E   PAS TK MT  +  E     K +LN  + + K       +++ L+E   +T E+ 
Sbjct: 61  NEKLAPASTTKTMTALLTVE-----KANLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEEL 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + AL+ +SAND + A  E ISGSE+KFA LM+ +A+++G +NT + NASGL + + +TT 
Sbjct: 116 LNALLIQSANDAAVALAEHISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT-------NHNKLLNKMH-----NIDG 239
            D A++     KN P   +      +     I++       N+N+L+++       +I  
Sbjct: 176 YDLALIMNAASKN-PIIDEITKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFC 234

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE--RDQKAL 281
            KTGYT  S      + +  D  ++  ++G  T  +   D K L
Sbjct: 235 NKTGYTTKSRHTFTCAAKRGDRKLILTLLGYDTKDQYYEDTKNL 278


>gi|168212842|ref|ZP_02638467.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens CPE
           str. F4969]
 gi|170715638|gb|EDT27820.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens CPE
           str. F4969]
          Length = 444

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 113/224 (50%), Gaps = 20/224 (8%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +E   PAS TK MT  +  E     K +LN  + + K       +++ L+E   +T E+ 
Sbjct: 61  NEKLAPASTTKTMTALLTVE-----KANLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEEL 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + AL+ +SAND + A  E ISGSE+KFA LM+ +A+++G +NT + NASGL + + +TT 
Sbjct: 116 LNALLIQSANDAAVALAEHISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT-------NHNKLLNKMH-----NIDG 239
            D A++     KN P   +      +     I++       N+N+L+++       +I  
Sbjct: 176 YDLALIMNAASKN-PIIDEITKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFC 234

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE--RDQKAL 281
            KTGYT  S      + +  D  ++  ++G  T  +   D K L
Sbjct: 235 NKTGYTTKSRHTFTCAAKRGDRKLILTLLGYDTKDQYYEDTKNL 278


>gi|325957359|ref|YP_004292771.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus acidophilus
           30SC]
 gi|325333924|gb|ADZ07832.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus acidophilus
           30SC]
          Length = 432

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 119/244 (48%), Gaps = 29/244 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKT 109
           S+I ID +  Q+   K  +   P AS+TK++T+Y+  + +++KKL  + ++    P+ K 
Sbjct: 50  SAIAIDSDSGQILYAKNADKTLPIASMTKLVTVYLTLQAIKNKKLSWDQKVKPTAPIVKV 109

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A     S + LK    +T  Q   A +  SAN  +   G+ I+GS+K F   M  + KK 
Sbjct: 110 ANNTEYSNVPLKMGHSYTIRQLYQATLIESANGAAMLLGQTIAGSQKAFINQMRAQVKKW 169

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++     A GL + N                 +A+D AI+G  L K+FP+      I 
Sbjct: 170 GIEDAKIYTACGLPNGNLGKDAYPGVNKNDENTMSAKDMAIIGQNLIKDFPEVLDTTKIA 229

Query: 216 --KFRYRNRI--ITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              F+  N++  + N N +L      ++ + +DG+KTG T  +G   + ++ +    ++ 
Sbjct: 230 HLNFKDGNKVTKMANFNWMLKGLSQYDEAYPVDGLKTGTTDAAGACFIGTVEHSGARLIT 289

Query: 266 VVMG 269
           VVMG
Sbjct: 290 VVMG 293


>gi|153813196|ref|ZP_01965864.1| hypothetical protein RUMOBE_03612 [Ruminococcus obeum ATCC 29174]
 gi|149830727|gb|EDM85818.1| hypothetical protein RUMOBE_03612 [Ruminococcus obeum ATCC 29174]
          Length = 417

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 19/211 (9%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTT 128
           D+  YP +  K+MT  +  E  Q     L+ Q+ ++ T     T   + +  +    FT 
Sbjct: 75  DQVLYPGATVKVMTTLLTLENAQ-----LSDQVTMTATGVSGVTDGGASISAQLDEVFTV 129

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           EQ + A++  SANDV+    E I GS   F  +M+N+A ++G  NT++ N +GL D+NQ 
Sbjct: 130 EQCLYAIMLASANDVALQIAEQIGGSVDGFVQMMNNRAVELGCTNTVFTNPTGLPDENQH 189

Query: 189 TTARDQAIL--GILLRKNFPQYYKYFS----IRKFRYRNRIITNHNKLLNKMHN-----I 237
           TTA D A++    +  ++F    +  S            R++TN+  +LN  +       
Sbjct: 190 TTAHDMALITKAAIDNESFRAIAETTSYTIPATNVSGGERVLTNNFSMLNNTNASYYQYC 249

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            G + GYT  SG  +V         ++AVV+
Sbjct: 250 LGGREGYTEASGSTLVCGAEKNGVSLIAVVL 280


>gi|15894549|ref|NP_347898.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum
           ATCC 824]
 gi|15024194|gb|AAK79238.1|AE007639_11 D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum
           ATCC 824]
 gi|325508682|gb|ADZ20318.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum EA
           2018]
          Length = 425

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 116/224 (51%), Gaps = 28/224 (12%)

Query: 34  ILFL-SIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYI 88
           ++FL S I I++ +++   P  S+   +++D N  Q+   K     YP AS TK+MT  +
Sbjct: 11  VMFLFSTININIYAKVPDPPNVSADGAVLMDGNSGQILYEKNMNASYPPASTTKIMTALL 70

Query: 89  IFEYLQSKKLHLNTQIPVS-----KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
             E     K  L+ ++ VS     K  A ++ + + +      T    + AL+  SAND 
Sbjct: 71  TLE-----KCKLDDKVKVSNDFTTKYLALRDGNSIGITNGEELTVRDLLHALLLISANDA 125

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           + A  E ISGS + FA LM+ KA ++G  NT +KN +GL+DK+  T+A+D A++   L K
Sbjct: 126 AVALAEHISGSPQAFATLMNKKAAELGCTNTNFKNPNGLYDKDHKTSAKDLALIMKELSK 185

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRN 247
            +P+Y K            I T  N  ++  +N+D  KT  +RN
Sbjct: 186 -YPEYQK------------ISTTLNYQMSPTNNMDAEKTKKSRN 216


>gi|182624061|ref|ZP_02951849.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens D str.
           JGS1721]
 gi|177910954|gb|EDT73308.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens D str.
           JGS1721]
          Length = 444

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 113/224 (50%), Gaps = 20/224 (8%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +E   PAS TK MT  +  E     K +LN  + + K       +++ L+E   +T E+ 
Sbjct: 61  NEKLAPASTTKTMTALLTVE-----KANLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEEL 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + AL+ +SAND + A  E ISGSE+KFA LM+ +A+++G +NT + NASGL + + +TT 
Sbjct: 116 LNALLIQSANDAAVALAEHISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT-------NHNKLLNKMH-----NIDG 239
            D A++     KN P   +      +     I++       N+N+L+++       +I  
Sbjct: 176 YDLALIMNAASKN-PIIDEITKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFC 234

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE--RDQKAL 281
            KTGYT  S      + +  D  ++  ++G  T  +   D K L
Sbjct: 235 NKTGYTTKSRHTFTCAAKRGDRKLILTLLGYDTKDQYYEDTKNL 278


>gi|169346809|ref|ZP_02865760.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens C str.
           JGS1495]
 gi|169297091|gb|EDS79213.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens C str.
           JGS1495]
          Length = 444

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 113/224 (50%), Gaps = 20/224 (8%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +E   PAS TK MT  +  E     K +LN  + + K       +++ L+E   +T E+ 
Sbjct: 61  NEKLAPASTTKTMTALLTVE-----KANLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEEL 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + AL+ +SAND + A  E ISGSE+KFA LM+ +A+++G +NT + NASGL + + +TT 
Sbjct: 116 LNALLIQSANDAAVALAEHISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT-------NHNKLLNKMH-----NIDG 239
            D A++     KN P   +      +     I++       N+N+L+++       +I  
Sbjct: 176 YDLALIMNAASKN-PIIDEITKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFC 234

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE--RDQKAL 281
            KTGYT  S      + +  D  ++  ++G  T  +   D K L
Sbjct: 235 NKTGYTTKSRHTFTCAAKRGDRKLILTLLGYDTKDQYYEDTKNL 278


>gi|229184724|ref|ZP_04311923.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BGSC 6E1]
 gi|228598738|gb|EEK56359.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BGSC 6E1]
          Length = 429

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 130/252 (51%), Gaps = 41/252 (16%)

Query: 35  LFLSIIMISMAS--------ELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMT 85
           LF SI +IS ++        E+ A    S+++++ N  ++   K  DE    AS+TKMM+
Sbjct: 23  LFCSITVISGSASAETVSAIEVEAG---SAVLVEANSGKILYEKNADELLAIASMTKMMS 79

Query: 86  LYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
            Y++ E +++ KL  N ++ +S    K +  ++ S + L+    +T ++   A++  SAN
Sbjct: 80  EYLVHEAVENGKLKWNQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYEAMVIYSAN 139

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--HD-------------KN 186
             + A  E I+G E  F  +M++K+K+ GM+N  + N++GL  HD             KN
Sbjct: 140 GATIALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPEGTTPDEKN 199

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----IITNHNKLLNKM----HNI 237
           ++ +ARD AIL   L ++FP+      I K  ++        +TN N +L  +      +
Sbjct: 200 KM-SARDCAILAQRLIQDFPKILDTAKIPKKTFQQGGKYPIDMTNFNWMLKGLIKQYEGV 258

Query: 238 DGIKTGYTRNSG 249
           DG+KTG T  +G
Sbjct: 259 DGLKTGTTPEAG 270


>gi|170755725|ref|YP_001782612.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum B1 str. Okra]
 gi|169120937|gb|ACA44773.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum B1 str. Okra]
          Length = 415

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 121/258 (46%), Gaps = 24/258 (9%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           +++  IL  S+   ++A    +KP         +++D    ++   K  D+P  PAS TK
Sbjct: 7   KILCSILLFSLFFSNVALAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYPPASTTK 66

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT  +  E     + +L+  + + +       SK+Y+ E         +  L+  SAND
Sbjct: 67  IMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLLLASAND 121

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E++SGS   F   M+ +AK++G  NT + N SGL++    T+ARD AI+   L 
Sbjct: 122 CAEALAEYLSGSLDNFPKDMNKRAKELGCTNTNFVNPSGLYNDKHRTSARDLAIIMNELV 181

Query: 203 KNFPQYYKYFSIRKFRY-------RNRIITNHNKLLNKMHN-----IDGIKTGYTRNSGF 250
           K  P+Y K  +   +           R + N NKL+ K  N      +G KTGYT  S  
Sbjct: 182 KQ-PEYSKIATTLSYNIPPTNKSKEKRPLWNENKLIQKHSNFYYKGCEGGKTGYTVQSDH 240

Query: 251 NIVTSLRYKDDPIVAVVM 268
           + V S+   +  I+  ++
Sbjct: 241 SYVASVNKNNHRIIVALV 258


>gi|18311103|ref|NP_563037.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens str.
           13]
 gi|18145786|dbj|BAB81827.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens str.
           13]
          Length = 444

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 113/224 (50%), Gaps = 20/224 (8%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +E   PAS TK MT  +  E     K +LN  + + K       +++ L+E   +T E+ 
Sbjct: 61  NEKLAPASTTKTMTALLTVE-----KANLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEEL 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + AL+ +SAND + A  E ISGSE+KFA LM+ +A+++G +NT + NASGL + + +TT 
Sbjct: 116 LNALLIQSANDAAVALAEHISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT-------NHNKLLNKMH-----NIDG 239
            D A++     KN P   +      +     I++       N+N+L+++       +I  
Sbjct: 176 YDLALIMNAASKN-PIIDEITKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFC 234

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE--RDQKAL 281
            KTGYT  S      + +  D  ++  ++G  T  +   D K L
Sbjct: 235 NKTGYTTKSRHTFTCAAKRGDRKLILTLLGYDTKDQYYEDTKNL 278


>gi|319654383|ref|ZP_08008470.1| hypothetical protein HMPREF1013_05090 [Bacillus sp. 2_A_57_CT2]
 gi|317393882|gb|EFV74633.1| hypothetical protein HMPREF1013_05090 [Bacillus sp. 2_A_57_CT2]
          Length = 389

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 117/230 (50%), Gaps = 18/230 (7%)

Query: 55  SSIVIDVNKNQMTGF--KQDEPRYPASLTKMMT-LYIIFEYLQSKKLHLNTQIPVSKTAA 111
           S+I+ID N  ++  F  K  E  YPASLTK+ T +Y I      +K +LN  + +     
Sbjct: 33  SAILIDANTGEIL-FEKKATEEMYPASLTKIATAIYAI------EKGNLNDIVSIGSNPR 85

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +++YL+E    +  + I  L+  S ND   A  E + GS + F+  +++    +G+
Sbjct: 86  KIEGTRVYLEEGERVSLRKLIQGLLINSGNDAGVAIAEHMDGSIETFSKNLNSYLAGLGL 145

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR----IITNH 227
           +NT++ N  GL +   +TTA D A L     +N  ++ + F  ++  ++       +  H
Sbjct: 146 KNTVFMNPHGLFNPEHVTTAEDLATLTQYAMEN-QEFSEIFGTKELEWKGATWKTTLYTH 204

Query: 228 NKLLNKM--HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           +KL+ ++    + G KTGY   SG  +VT+ + K+  ++ V +   +SQE
Sbjct: 205 HKLMRELPYEGVIGGKTGYVDQSGHTLVTAAKRKELSLIVVTLN-ASSQE 253


>gi|288904540|ref|YP_003429761.1| penicillin-binding protein 5 (D-alanyl-D-alanine carboxypeptidase)
           [Streptococcus gallolyticus UCN34]
 gi|325977511|ref|YP_004287227.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288731265|emb|CBI12815.1| putative penicillin-binding protein 5 (D-alanyl-D-alanine
           carboxypeptidase) [Streptococcus gallolyticus UCN34]
 gi|325177439|emb|CBZ47483.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein
           5/6) [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 412

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 113/239 (47%), Gaps = 25/239 (10%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTE 129
           P   AS+TK++T+Y++++ +   KL  +T++ +S  A    A  + S + ++ + Y T E
Sbjct: 53  PDGIASMTKILTVYLVYKAIDEGKLSWDTKVSISDYAYDLTANSDASNVPMEAREY-TVE 111

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH------ 183
           Q + A +  SAN  + A  E I G+E KF  +M  + ++ G+ +    NASGL+      
Sbjct: 112 QLVNAAMVASANSAAIALAEQIGGTESKFVDMMKAQLEEWGITDATIVNASGLNNSYLGD 171

Query: 184 ---------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
                    D+N + +ARD AI+   L   +P   K  S     +    +  +N +L  M
Sbjct: 172 NIYPGSSSTDENMM-SARDVAIIAQHLITEYPDILKITSQTTADFDGTTMNTYNYMLEGM 230

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
                 +DG+KTG T  +G + V +       I++VVM     ++ +    E     L+
Sbjct: 231 PYERSGVDGLKTGTTELAGASFVATSTENGMRIISVVMNADGWEDDEYARFEATNDLLD 289


>gi|325678286|ref|ZP_08157914.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus albus 8]
 gi|324110049|gb|EGC04237.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus albus 8]
          Length = 401

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 104/224 (46%), Gaps = 21/224 (9%)

Query: 55  SSIVIDVNKNQM-TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++++D + N++  G K D+  YPASLTK+MTL +  E +                   +
Sbjct: 99  TAVLMDADSNELIAGLKYDKKIYPASLTKLMTLLVAVENIDDMNAKYKFTDKDIDPLIDE 158

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           N S+         T E  + A I  S  D +      I+GSEK F  LM++KA ++G+ +
Sbjct: 159 NASRAGYVAGDEATMEDLLYAAILPSGADGTLGLANAIAGSEKDFVKLMNDKAAELGLTD 218

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKN-------------------FPQYYKYFSI 214
           T + NASGLHDK   TTA+D A++     +N                   F    +  SI
Sbjct: 219 TNFVNASGLHDKQHYTTAQDMAVITRACLQNDVCRKVMFAEKWTTKPTQEFEDGIELDSI 278

Query: 215 RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
              R+    I + ++   +   ++G KTG+T  S F + T ++Y
Sbjct: 279 LHSRFGGYFI-DADQDGAEDAELEGGKTGFTDESMFCLSTVVKY 321


>gi|324326527|gb|ADY21787.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 338

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 138/274 (50%), Gaps = 33/274 (12%)

Query: 34  ILFLSIIMISM----------ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
           ILFLS ++ ++             + AK   S+I+ID N +++   K +E P   A+L+K
Sbjct: 9   ILFLSFVITTLIVLYFYLYVNGPIIQAK---SAILIDSNSSEVIYKKNEEIPIQSATLSK 65

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           +MT YI+ E L   K+ L+  + +S     A  +P +   K+KT  T    + AL     
Sbjct: 66  LMTEYIVMEKLNEGKIQLDELVKISNEVFRAETSPIQATSKDKT--TVRDLLHALFLTGN 123

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGM-QNTIYKNASGLH---DKNQITTARDQAI 196
           N  + A  E I+G+E  F +LM+ KAK++ + Q + + NA+G++   +K   TTA D A 
Sbjct: 124 NRSALALAEHIAGNEDNFTLLMNEKAKQLKLSQPSPFLNATGMNNDTNKQSTTTAIDVAK 183

Query: 197 LGILLRKNFPQYYKY--FSIRKFRYRNRIITNHNKL---LN---KMHNIDGIKTGYTRNS 248
           L   L  +FP        +  +F + +  + N NK+   LN   K+  +DG++T +  N 
Sbjct: 184 LATQLVTDFPDVLNITKLTSYQFTFNDSKVFNTNKMIYSLNKNIKLQGVDGLQTSFLING 243

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            ++ V + +  D  +++V++    S E +   +E
Sbjct: 244 NYSFVGTAKRGDTRLISVILD---SNEENSTFIE 274


>gi|225864479|ref|YP_002749857.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus 03BB102]
 gi|225790585|gb|ACO30802.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus 03BB102]
          Length = 424

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 130/252 (51%), Gaps = 41/252 (16%)

Query: 35  LFLSIIMISMAS--------ELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMT 85
           LF SI +IS ++        E+ A    S+++++ N  ++   K  DE    AS+TKMM+
Sbjct: 18  LFCSITVISGSASAETVSAIEVEAG---SAVLVEANSGKILYEKNADELLAIASMTKMMS 74

Query: 86  LYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
            Y++ E +++ KL  N ++ +S    K +  ++ S + L+    +T ++   A++  SAN
Sbjct: 75  EYLVHEAVENGKLKWNQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYEAMVIYSAN 134

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--HD-------------KN 186
             + A  E I+G E  F  +M++K+K+ GM+N  + N++GL  HD             KN
Sbjct: 135 GATIALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPEGTTPDEKN 194

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----IITNHNKLLNKM----HNI 237
           ++ +ARD AIL   L ++FP+      I K  ++        +TN N +L  +      +
Sbjct: 195 KM-SARDCAILAQRLIQDFPKILDTAKIPKKTFQQGGKYPIDMTNFNWMLKGLIKQYEGV 253

Query: 238 DGIKTGYTRNSG 249
           DG+KTG T  +G
Sbjct: 254 DGLKTGTTPEAG 265


>gi|187918466|ref|YP_001884029.1| D-alanyl-D-alanine carboxypeptidase [Borrelia hermsii DAH]
 gi|119861314|gb|AAX17109.1| D-alanyl-D-alanine carboxypeptidase [Borrelia hermsii DAH]
          Length = 316

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 105/213 (49%), Gaps = 20/213 (9%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN----PSKLYLKEKTYFTTEQGI 132
           PASLTK++T+Y      + K + L T +P+S  A+  N     S ++L+E      E+ +
Sbjct: 60  PASLTKLVTIYTALVEARKKNIDLKTIVPISSAASYYNLPLGSSLMFLEEGHKVNFEELL 119

Query: 133 LALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
             L+  S ND + A  EFI G     F  LM+     +G+ N  + + SG  + NQIT A
Sbjct: 120 KGLVISSGNDAAIAIAEFIVGKNLSNFVNLMNINVLNLGLVNMNFVDTSGYCNGNQIT-A 178

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRY---RNRIITNHNKLLN-KMHN----------I 237
            + A+      + F       S++ F Y    N   T+ +K+LN K  N           
Sbjct: 179 LEMALFARTYIEEFEFMLAIHSLKDFIYPRSENLGNTSSSKMLNLKQENRNVLIFNYPYA 238

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           DG+KTGY + SG N+V + +  D  ++AVV+G+
Sbjct: 239 DGLKTGYIKTSGLNLVATAKKDDIRLIAVVLGV 271


>gi|296328746|ref|ZP_06871260.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|296154081|gb|EFG94885.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 423

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 125/264 (47%), Gaps = 10/264 (3%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E      + ++V+   K  +   K  +  YP AS+TKMM+L + F+ + + K+ LN  + 
Sbjct: 161 EWELPDNFRAVVVGDTKGNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGKISLNDSVR 220

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI-SGSEKKFAILMSN 164
           +SK       S + LK    F  E  I A    SAN+ + A  E++ +GS   F   M+ 
Sbjct: 221 ISKNPLKYGGSGIPLKAGQMFVLEDLIKASAVYSANNATYAIAEYVGNGSVFSFVAKMNK 280

Query: 165 KAKKIGMQNTI-YKNASGLHDKNQITTARDQAILGIL-LRKNFPQYYKYFSIRKFR---- 218
           K K+ G+QN I Y   +GL  +       +    GI  L     +Y KY  I   +    
Sbjct: 281 KLKEYGLQNEIKYHTPAGLPTRVTKQPMDEGTARGIYKLSIEALKYKKYIEIAGIKSTKI 340

Query: 219 YRNRI-ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           +  +I I N N L+ + + + GIKTG+ + + +NI  + +++   ++ VVMG  T + RD
Sbjct: 341 HNGKISIRNRNHLIGE-NGVYGIKTGFHKEAKYNIAVASKFEGIDVIIVVMGGETYKTRD 399

Query: 278 QKALELITSFLEKKTLKHQQTHRK 301
              L ++       T+K+    RK
Sbjct: 400 GIVLSVLDILNSNYTIKNGLIKRK 423


>gi|89895253|ref|YP_518740.1| hypothetical protein DSY2507 [Desulfitobacterium hafniense Y51]
 gi|89334701|dbj|BAE84296.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 379

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 110/234 (47%), Gaps = 24/234 (10%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           R PAS TK++T  +  E  +  +L     + VS+ AA    S ++L         + +  
Sbjct: 68  RPPASTTKILTAILGLELGKPDEL-----VVVSEKAAAVGESTIHLDPGEKILLYELVTG 122

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            + +S ND   A  E I+G+E+ F  LM+ KA  +G +NT ++N +GL +KN ++TA D 
Sbjct: 123 AMVKSGNDACVAIAEQIAGTEEDFVRLMNQKAFLLGAKNTHFENTNGLPNKNHVSTAYD- 181

Query: 195 AILGILLRKNFPQYYKYFSIRKFR-----------YRNRIITNHNKLLNKMHNIDGIKTG 243
             L ++ R    Q   + SI + +           + N  + N NKLL      DG+KTG
Sbjct: 182 --LALMARYGL-QIPAFTSITRLKETEIHFIEPDFFMN--LRNTNKLLWNYPYTDGVKTG 236

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQ 297
            T  +G  +V         ++AVV+  P      QK LE    F E +TL   Q
Sbjct: 237 TTTAAGKCLVAGATKDGRQLIAVVLHAPDRFGDAQKLLEW--GFNETETLNCVQ 288


>gi|19703412|ref|NP_602974.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19713482|gb|AAL94273.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 368

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 125/264 (47%), Gaps = 10/264 (3%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E      + ++V+   K  +   K  +  YP AS+TKMM+L + F+ + + K+ LN  + 
Sbjct: 106 EWELPDNFRAVVVGDTKGNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGKISLNDSVR 165

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI-SGSEKKFAILMSN 164
           +SK       S + LK    F  E  I A    SAN+ + A  E++ +GS   F   M+ 
Sbjct: 166 ISKNPLKYGGSGIPLKAGQMFVLEDLIKASAVYSANNATYAIAEYVGNGSVFSFVAKMNK 225

Query: 165 KAKKIGMQNTI-YKNASGLHDKNQITTARDQAILGIL-LRKNFPQYYKYFSIRKFR---- 218
           K K+ G+QN I Y   +GL  +       +    GI  L     +Y KY  I   +    
Sbjct: 226 KLKEYGLQNEIKYHTPAGLPTRVTKQPMDEGTARGIYKLSIEALKYKKYIEIAGIKSTKI 285

Query: 219 YRNRI-ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           +  +I I N N L+ + + + GIKTG+ + + +NI  + +++   ++ VVMG  T + RD
Sbjct: 286 HNGKISIRNRNHLIGE-NGVYGIKTGFHKEAKYNIAVASKFEGTDVIIVVMGGETYKTRD 344

Query: 278 QKALELITSFLEKKTLKHQQTHRK 301
              L ++       T+K+    RK
Sbjct: 345 GIVLSVLDILNSNYTIKNGLIKRK 368


>gi|322385858|ref|ZP_08059501.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus cristatus
           ATCC 51100]
 gi|321270143|gb|EFX53060.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus cristatus
           ATCC 51100]
          Length = 447

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 122/260 (46%), Gaps = 37/260 (14%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +PK SS++ID N   +      DE R PAS++K+MTLY++FE ++  KL L+T I    T
Sbjct: 44  RPK-SSLMIDGNTGDILWQDNIDEVRDPASMSKIMTLYLVFEAIKEGKLSLDTVI--KAT 100

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILM 162
              Q  + +Y      +     +T  + I   +  S+N  +     ++S ++   F   M
Sbjct: 101 PQDQAVAGIYEISNNKIVAGVNYTVSELITMTVVPSSNATTVMLANYLSDNDPDAFLDKM 160

Query: 163 SNKAKKIGMQNTIYKNASGL----------------HDKNQITTARDQAILGILLRKNFP 206
           + KA+++GM NT + NASG                 +  NQ TTARD  IL     KN+P
Sbjct: 161 NAKAQELGMTNTKWFNASGAAAVSFKGYYTPQRYNNYASNQ-TTARDLGILVYNFVKNYP 219

Query: 207 QYYKYFSIRKFR------YRNRIITNHNKLLN---KMHNIDGIKTGYTRNSGFNIVTSLR 257
               Y +  K        Y     T +  L      +  +DG+KTG + N  FN + +++
Sbjct: 220 DILNYTNQAKVTVKAGTPYEETFETYNYSLPGARYALEGVDGLKTGSSPNGAFNYIATVK 279

Query: 258 YKDDPIVAVVMGMPTSQERD 277
             +  ++ V+MG+    ++D
Sbjct: 280 RGNQRVIGVIMGVGDWADQD 299


>gi|237743211|ref|ZP_04573692.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 7_1]
 gi|229433507|gb|EEO43719.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 7_1]
          Length = 389

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 126/257 (49%), Gaps = 10/257 (3%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           + ++++   K  +   K  +  YP AS+TKMM+L + F+ + +  + LN  + +SKT   
Sbjct: 134 FRAVIVGDTKGNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGNISLNDSVRISKTPLK 193

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI-SGSEKKFAILMSNKAKKIGM 171
              S + LK    F  E  I A    SAN+ + A  E++ +GS   F   M+ K +++G+
Sbjct: 194 YGGSGIALKAGQMFILEDLIKAAAVYSANNATYAIAEYVGNGSIFGFVTKMNKKLRELGL 253

Query: 172 QNTI-YKNASGLHDKNQITTARDQAILGIL-LRKNFPQYYKYFSIRKFR----YRNRI-I 224
           QN I Y   +GL  +       +    GI  L     +Y KY  I   +    + ++I I
Sbjct: 254 QNEIKYHTPAGLPTRVTKQPMDEGTARGIYKLSIEALKYKKYIEIAGIKTTKIHNDKISI 313

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            N N L+ + + + GIKTG+ + + +NI  + +++   ++ VV+G  T + RD     ++
Sbjct: 314 RNRNHLIGE-NGVYGIKTGFHKEAKYNIAVASKFEGTDVIIVVLGGETYKTRDNLVRNIL 372

Query: 285 TSFLEKKTLKHQQTHRK 301
               E  T+K+    RK
Sbjct: 373 NILSENYTVKNGLIKRK 389


>gi|52081783|ref|YP_080574.1| putative carboxypeptidase [Bacillus licheniformis ATCC 14580]
 gi|52787169|ref|YP_092998.1| hypothetical protein BLi03478 [Bacillus licheniformis ATCC 14580]
 gi|319647699|ref|ZP_08001917.1| hypothetical protein HMPREF1012_02956 [Bacillus sp. BT1B_CT2]
 gi|52004994|gb|AAU24936.1| putative carboxypeptidase [Bacillus licheniformis ATCC 14580]
 gi|52349671|gb|AAU42305.1| putative protein [Bacillus licheniformis ATCC 14580]
 gi|317390040|gb|EFV70849.1| hypothetical protein HMPREF1012_02956 [Bacillus sp. BT1B_CT2]
          Length = 384

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/279 (31%), Positives = 133/279 (47%), Gaps = 22/279 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMT-LYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S+I+ID    Q+   K    + YPAS+TK+ T +Y I      +  +L  ++ VSK AA 
Sbjct: 37  SAILIDGKSGQVLYEKNSRKKMYPASITKIATAIYAI------ENGNLEDRVKVSKNAAQ 90

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA-ILMSNKAKKIGM 171
              S +YL+E      ++ +  L+  S ND  TA  E +SGS K+FA  L +  A+  G+
Sbjct: 91  TEGSSVYLEEGESVPLKRLLQGLLMNSGNDAGTAIAEHLSGSVKQFADDLNAFIAEHAGV 150

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR----IITNH 227
            +T + N  GL DKN  TT+ D A +     KN   +   FS ++  +  +     + NH
Sbjct: 151 HDTHFMNPHGLFDKNHYTTSADMARITEYAMKN-KTFRALFSEKQTDWHGQTWDTTLKNH 209

Query: 228 NKLLNK---MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE--RDQKALE 282
           +++L        I G KTG+   S   +VT+       ++AVVM   + +    D KAL 
Sbjct: 210 HRMLTGEIPYKGITGGKTGFVDESKHTLVTTATRGSLDLIAVVMKADSKKMMYSDTKAL- 268

Query: 283 LITSF--LEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
           L   F   E + LK  +     N +S  LK  L + K K
Sbjct: 269 LDEGFHNFETQELKKGEAFTDQNGTSHELKDPLYVTKKK 307


>gi|320547987|ref|ZP_08042268.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus equinus
           ATCC 9812]
 gi|320447333|gb|EFW88095.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus equinus
           ATCC 9812]
          Length = 419

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 110/239 (46%), Gaps = 25/239 (10%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTE 129
           P   AS+TK++T+Y+ ++ + +  L  +T++P+S  A    A  + S + ++   Y T E
Sbjct: 60  PAGIASMTKILTVYLTYKEIDNGNLSWDTKVPISDYAYDLTANSDASNVPMEAHEY-TVE 118

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH------ 183
           Q + A +  SAN  + A  E I GSE  F  +M  +  + G+ +    NASGL+      
Sbjct: 119 QLVNAAMVASANSAAIALAEQIGGSESNFVDMMKAQLNEWGITDAKLVNASGLNNSYLSD 178

Query: 184 ---------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
                    D+N + +ARD AI+   L   +P   K  S     +    +  +N +L  M
Sbjct: 179 NIYPESSSTDENML-SARDIAIIARHLITEYPDVLKISSQTTADFDGSTMNTYNYMLKDM 237

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
                 +DG+KTG T  +G + V +       I++VVM     +E D    E     L+
Sbjct: 238 PYERDGVDGLKTGTTELAGASFVATSTENGMRIISVVMNADGWEENDFARFEATNELLD 296


>gi|119953389|ref|YP_945598.1| D-alanyl-D-alanine carboxypeptidase [Borrelia turicatae 91E135]
 gi|119862160|gb|AAX17928.1| D-alanyl-D-alanine carboxypeptidase [Borrelia turicatae 91E135]
          Length = 312

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 104/213 (48%), Gaps = 20/213 (9%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN----PSKLYLKEKTYFTTEQGI 132
           PASLTK++T+Y      + K + L T +P+S  A+  N     S ++L+E      E+ +
Sbjct: 60  PASLTKLVTIYTALVEARKKNIDLKTTVPISSAASYYNLPLDSSLMFLEEGHKVNFEELL 119

Query: 133 LALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
             LI  S ND + A  EFI G     F  LM+     +G+ N  + + SG    N+IT A
Sbjct: 120 KGLIISSGNDAAIAIAEFIVGKNLSDFVDLMNINVLNLGLINMSFVDTSGYSSDNKIT-A 178

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRY---RNRIITNHNKLLN---KMHNI-------- 237
            + A+      + F       S++ F Y    N   T+  K+LN   K  N+        
Sbjct: 179 LEMALFARTYIEEFEFILDIHSLKDFIYPRSENLGNTSSLKMLNFKQKNKNVLIFNYPYA 238

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           DG+KTGY + SG N+V + +  D  ++AVV+G+
Sbjct: 239 DGLKTGYIKTSGLNLVATAKKDDIRLIAVVLGV 271


>gi|118477901|ref|YP_895052.1| D-alanyl-D-alanine carboxypeptidase A [Bacillus thuringiensis str.
           Al Hakam]
 gi|118417126|gb|ABK85545.1| D-Ala-D-Ala carboxypeptidase A, Serine peptidase, MEROPS family S11
           [Bacillus thuringiensis str. Al Hakam]
          Length = 450

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 130/252 (51%), Gaps = 41/252 (16%)

Query: 35  LFLSIIMISMAS--------ELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMT 85
           LF SI +IS ++        E+ A    S+++++ N  ++   K  DE    AS+TKMM+
Sbjct: 44  LFCSITVISGSASAETVSAIEVEAG---SAVLVEANSGKILYEKNADELLAIASMTKMMS 100

Query: 86  LYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
            Y++ E +++ KL  N ++ +S    K +  ++ S + L+    +T ++   A++  SAN
Sbjct: 101 EYLVHEAVENGKLKWNQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYEAMVIYSAN 160

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--HD-------------KN 186
             + A  E I+G E  F  +M++K+K+ GM+N  + N++GL  HD             KN
Sbjct: 161 GATIALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPEGTTPDEKN 220

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----IITNHNKLLNKM----HNI 237
           ++ +ARD AIL   L ++FP+      I K  ++        +TN N +L  +      +
Sbjct: 221 KM-SARDCAILAQRLIQDFPKILDTAKIPKKTFQQGGKYPIDMTNFNWMLKGLIKQYEGV 279

Query: 238 DGIKTGYTRNSG 249
           DG+KTG T  +G
Sbjct: 280 DGLKTGTTPEAG 291


>gi|306820946|ref|ZP_07454566.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551060|gb|EFM39031.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 434

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 94/212 (44%), Gaps = 25/212 (11%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           +PAS TK+MT  +  E      L L   I V +     + S +YL     F   + I A+
Sbjct: 60  FPASTTKIMTGLLAIE-----NLDLEKSITVPEDFQLVDGSSMYLLPGETFKVRELIQAV 114

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  SAND        ISGS   F  LM+ KA ++G  NT + N  GLHD N  TTA D A
Sbjct: 115 LIHSANDACVLLAIEISGSVDSFVQLMNQKAAELGATNTHFVNPHGLHDDNHYTTAYDMA 174

Query: 196 ILGILLRKN-------------------FPQYYKYFSIRKFRYRNRIITNHNKLLN-KMH 235
           I+     KN                    P+   Y +  +F + N  I   N+ +  K  
Sbjct: 175 IIAREAMKNDEFRKIVGQSSLILPETPKTPEKRIYNNTNRFLWSNSEIIYKNQYIPIKYD 234

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            IDGIKTGYT   G  +V S    D  +++VV
Sbjct: 235 IIDGIKTGYTLEGGNCLVASGIKNDMRLISVV 266


>gi|226950403|ref|YP_002805494.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A2 str. Kyoto]
 gi|226841760|gb|ACO84426.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A2 str. Kyoto]
          Length = 415

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 122/258 (47%), Gaps = 24/258 (9%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           +++  IL  S+   ++A    +KP         +++D    ++   K  D+P  PAS TK
Sbjct: 7   KILCSILLFSLFFSNVALAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYPPASTTK 66

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT  +  E     + +L+  + + +       SK+Y+ E         +  L+  SAND
Sbjct: 67  IMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLLLASAND 121

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E++SGS   F+  M+ +AK++G  NT + N SGL++    T+ARD AI+   L 
Sbjct: 122 CAEALAEYLSGSLDNFSKDMNKRAKELGCINTNFVNPSGLYNDKHRTSARDLAIIMNELV 181

Query: 203 KNFPQYYKYFSIRKFRY-------RNRIITNHNKLLNKMHN-----IDGIKTGYTRNSGF 250
           K  P+Y K  +   +           R + N NKL+ K  N      +G KTGYT  S  
Sbjct: 182 KQ-PEYSKIATTLSYNIPPTNKSKEKRPLWNENKLIQKHSNFYYKGCEGGKTGYTVQSDH 240

Query: 251 NIVTSLRYKDDPIVAVVM 268
           + V S+   +  I+  ++
Sbjct: 241 SYVASVNKNNHRIIVALV 258


>gi|310779537|ref|YP_003967870.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ilyobacter
           polytropus DSM 2926]
 gi|309748860|gb|ADO83522.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ilyobacter
           polytropus DSM 2926]
          Length = 368

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 139/270 (51%), Gaps = 14/270 (5%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYP-ASLTKMMTLYIIFEY 92
           +FLS+I+        +   Y+S+++  +K++   + ++   ++P AS+TKMMT+ +++++
Sbjct: 7   IFLSVILFLTT---FSNEDYTSLLVG-DKDENIYYSENLHEKHPLASVTKMMTVMVVYDH 62

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           +++K + L  ++ +S  A +   S +++ + +  T    + A    SAN+ + A  E+I 
Sbjct: 63  IRNKDISLEDRVEISPEARSVGGSMIWIAQGSKLTVRDLLKATAIYSANNAAYALAEYIG 122

Query: 153 GSEKKFAI-LMSNKAKKIGMQNTI-YKNASGLHDKNQITTARDQAILGI----LLRKNFP 206
             +  F + LM+ KA+ +G+ + + +    GL              LGI    L    +P
Sbjct: 123 KGDVDFFVQLMNQKAEDLGLGDEVEFYTPMGLPPSMTGKPMDRGTALGIYKLSLEALKYP 182

Query: 207 QYYKYFSIRK--FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           +Y    S+++   +   + I N NKLL+K + + GIKTG+   +G+NI  + +  +   +
Sbjct: 183 EYITIASLKEDFIQDGTQRIVNRNKLLSKENGVFGIKTGHHSKAGYNISIAAKRDEVTTI 242

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKTLK 294
            +V G P  + RD+   + +  F ++  L+
Sbjct: 243 TIVFGSPKEEIRDKTVADSLDKFYDEYHLE 272


>gi|291532362|emb|CBL05475.1| D-alanyl-D-alanine carboxypeptidase [Megamonas hypermegale ART12/1]
          Length = 376

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 111/241 (46%), Gaps = 15/241 (6%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A  L      ++I+ID    ++   K  D    PAS TKMMT  +  E      +     
Sbjct: 22  ADNLQDMTAQAAILIDATTGRVLYEKNPDAKAMPASTTKMMTCILGLENANDDDI----- 76

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILM 162
           + V K A     S +Y+ E       + + A +  S ND + A   ++  GS + F  +M
Sbjct: 77  VEVDKRAVGVEGSAIYINEGDKIKMSELLQATMLASGNDGAAAIAYYVGKGSLETFVQMM 136

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY--- 219
           ++KAK+IG  NT + N  GL D N  TTARD A +     +N  ++ K  S ++      
Sbjct: 137 NDKAKEIGATNTHFNNPHGLTDPNHYTTARDLAKIARYAYQN-EKFRKIVSTKEQEIQWV 195

Query: 220 ----RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
               R  I  + N+LL    ++ GIKTGYT  +G  +V S +     ++AVV+    S+ 
Sbjct: 196 NPAERKDIYGSTNRLLWNYDDVTGIKTGYTDAAGGCLVASAQKNGITLIAVVLKTSDSRA 255

Query: 276 R 276
           R
Sbjct: 256 R 256


>gi|312876024|ref|ZP_07736013.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311797222|gb|EFR13562.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 387

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 119/257 (46%), Gaps = 20/257 (7%)

Query: 42  ISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKK 97
           I  A+E    P+ SS   I I+    ++   K  + + P AS TK+MT  ++ E      
Sbjct: 34  ICYANEKKNLPQISSKSAIAIEWVTRKILFEKNKDLKLPMASTTKIMTAILVLE-----N 88

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
             +N +I +   A     S +YL++         +  L+  S ND + A     +G   +
Sbjct: 89  CDVNKEIEIPPQAVGVPGSSMYLEKGEKLKIIDLLYGLMLSSGNDAAVALAIATAGDVIR 148

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKY---- 211
           F  LM+ KAK++G+ NT++ +  GL      TTA D A L     +N  F Q  K     
Sbjct: 149 FVNLMNKKAKELGLSNTVFSSPHGLEQGEHYTTAHDLAKLAAYAMRNPIFRQIVKTTEKE 208

Query: 212 --FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
             ++ R +   NRI+ N NK+L      +G+KTG+T+ +G  +VTS    D  ++ VV+ 
Sbjct: 209 VPWTTRPY---NRILKNKNKMLRLYPGAEGVKTGFTKKAGRCLVTSACRDDFRVICVVLN 265

Query: 270 MPTSQERDQKALELITS 286
            P      +K L+   S
Sbjct: 266 APDMWNDTRKILDYCYS 282


>gi|223983850|ref|ZP_03634014.1| hypothetical protein HOLDEFILI_01295 [Holdemania filiformis DSM
           12042]
 gi|223964174|gb|EEF68522.1| hypothetical protein HOLDEFILI_01295 [Holdemania filiformis DSM
           12042]
          Length = 412

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 108/226 (47%), Gaps = 15/226 (6%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+++ID +   +   K  D+  YPAS+TK+MT+Y+        ++   T   +      +
Sbjct: 35  SAVLIDADSGAVLYEKNADDRHYPASITKIMTVYLALSQGNPDQMLTATDTAIDNI--DR 92

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S ++L      + +    A I  SAND S    E I GS+++FA LM+  A   G +N
Sbjct: 93  KSSHIWLDYGEELSLKDACYAAIMASANDASNVLAEAIGGSQEEFAGLMNEAAAAAGAKN 152

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-------RIITN 226
           T + NA GL D++  TTA D A++  +  KN   + + F   K+  +        R   +
Sbjct: 153 THFANAHGLPDEDHYTTAYDMAMITRMAMKN-AAFAEVFGTVKYEMQPTNKQKDVRYFAS 211

Query: 227 HNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            N +L K         G K G+T ++G+ IVT+       ++AVV+
Sbjct: 212 GNDMLKKGEFFYEYATGGKIGWTEDAGYTIVTTASKDGVNLIAVVL 257


>gi|291563035|emb|CBL41851.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
           SS3/4]
          Length = 459

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 110/225 (48%), Gaps = 22/225 (9%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS---KLYLKEKTYFTT 128
           DE   PAS TK+MT  ++ E     K +L+ ++  SKTA T   S   K+ L E    + 
Sbjct: 117 DEKLAPASTTKLMTALLVLE-----KANLDDKVTFSKTAVTNLESGAVKIGLVEGDQVSV 171

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           +  + AL+ +SAN+V+    E +SGS   FA LM+ +A ++G  NT + N +GL+   Q 
Sbjct: 172 KDSLYALLLKSANEVANGLAEHVSGSISAFAELMNARAAELGCTNTHFVNPNGLNSDQQY 231

Query: 189 TTARDQAILG-------ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-----NKMHN 236
           TT RD A +         L   +    YK+ + +      R IT  +K+L          
Sbjct: 232 TTCRDMAKIAAAAFANKTLCEIDSTLSYKFPATKAAAA--RTITPGHKMLYPNDSRYYAG 289

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           I G KTGYT  +G  +VT +      +VAV++   ++   D K +
Sbjct: 290 IVGGKTGYTSKAGNTLVTCVEKNGVRMVAVILKSKSTHYEDTKKM 334


>gi|224531645|ref|ZP_03672277.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia valaisiana
           VS116]
 gi|224511110|gb|EEF81516.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia valaisiana
           VS116]
          Length = 401

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 107/216 (49%), Gaps = 27/216 (12%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGI 132
           PASLTK++T+Y      + + + L   +P+S  A    A  N S ++L++      E+ +
Sbjct: 65  PASLTKIVTIYTALIEAEKRNIKLKNIVPISDAASYYNAPLNSSLMFLEKGQIVNFEEIL 124

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             L   S ND + A  EF+ G    F  LM+  A  +G+ N  +   SG  ++N+I TA 
Sbjct: 125 KGLSVSSGNDAAIAIAEFVVGDVNSFVNLMNINALNLGLFNMHFVEPSGYSNENKI-TAL 183

Query: 193 DQAILGILLRKNFPQYYKYF----SIRKFRY---RNRIITNHNKLLN---KMHNI----- 237
           D A       K++ + +K+     S+  F Y   +N  IT  +K LN   K  N+     
Sbjct: 184 DMAFFA----KSYIEKFKFMLNIHSLEYFVYPKSKNLGITLSSKFLNLKQKNANLLISEY 239

Query: 238 ---DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
              DG+KTGY R SG NI+ +    +  ++AVV+G+
Sbjct: 240 PYSDGLKTGYIRESGLNIIATALKGERRLIAVVLGV 275


>gi|317128665|ref|YP_004094947.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473613|gb|ADU30216.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           cellulosilyticus DSM 2522]
          Length = 390

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 105/216 (48%), Gaps = 16/216 (7%)

Query: 62  NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK 121
           +KN M      EP YPAS+TK++T  I  E        LN  + VS  A     +++YL 
Sbjct: 58  DKNMM------EPMYPASITKIVTAIIAIE-----TQDLNDIVTVSSDAVRAIGTRVYLL 106

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK-KIGMQN-TIYKNA 179
           E    T EQ +  L+  S ND + A  E I GS + F+  M++  + ++G+ + T + N 
Sbjct: 107 EDEEITLEQLLQGLMVSSGNDAAIAIAEHIDGSVEAFSDRMNDFVRTEVGVSDITNFTNP 166

Query: 180 SGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSIRKF-RYRNRIITNHNKLLNKMHN 236
            GL +++ +TTA D A +     KN  F +     S+         II NH+ L      
Sbjct: 167 HGLFEEDHVTTAYDMAKISAYAMKNETFRELVGTHSVEWVGEGWETIIYNHHPLTRSYDE 226

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           + GIK G+ R SG+ + T+   +   +++V +  P+
Sbjct: 227 VIGIKNGFVRMSGYTLSTAAIDEHIELISVTLNSPS 262


>gi|189218825|ref|YP_001939466.1| D-alanyl-D-alanine carboxypeptidase [Methylacidiphilum infernorum
           V4]
 gi|189185683|gb|ACD82868.1| D-alanyl-D-alanine carboxypeptidase [Methylacidiphilum infernorum
           V4]
          Length = 241

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 87/186 (46%), Gaps = 20/186 (10%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D P  PAS TK+MT  +++E     K      + + K      PS + L      +  Q 
Sbjct: 17  DVPFAPASTTKLMTALLVYE-----KTGFKGDVRIKKEDTLVQPSHVPLIAGEVISVNQL 71

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  L+  S ND + A     SGS +KF   M+ KA+ +G  NT + N  GL +  Q TTA
Sbjct: 72  VEELLIGSCNDAALALARACSGSVEKFVEEMNQKAQSLGCVNTHFVNPHGLFEPGQYTTA 131

Query: 192 RD-----QAILGILLRKNFPQYYKYFSIRKFRYRN----RIITNHNKLLNKMHNIDGIKT 242
           RD     QA + I      P   +    RK  ++N    R++ NHN+LL +   +   KT
Sbjct: 132 RDLMRIFQAAIKI------PAINQICQTRKIHFQNGGISRVMYNHNRLLGRYMGMGPAKT 185

Query: 243 GYTRNS 248
           G+TR S
Sbjct: 186 GWTRIS 191


>gi|327461601|gb|EGF07932.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK1]
 gi|327473321|gb|EGF18741.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK408]
          Length = 455

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 143/304 (47%), Gaps = 55/304 (18%)

Query: 24  IQRNIQLMGKILFLSII---------MISMASELHA--------KPKYSSIVIDVNKNQM 66
           +++ + L+G I+FL+ +         ++ MA +++         +PK SS+VID +   +
Sbjct: 5   VKKKLLLLG-IVFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPK-SSLVIDGSTGDV 62

Query: 67  TGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY------ 119
                 DE R PAS++K+MTLY++FE ++  K+   T I  + T   Q  + +Y      
Sbjct: 63  VWEDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVI--TATPQDQATANIYEISNNK 120

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKN 178
           +     +T  + I   I  S+N  +     ++S ++   F   M+ KA+++GM NT + N
Sbjct: 121 IVAGVDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFN 180

Query: 179 ASGL----------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR---- 218
           ASG                 +  NQ TTARD AIL      + P+   Y +  K      
Sbjct: 181 ASGAAAVSFKGYYNPQNYDNYASNQ-TTARDLAILAYNFVNHHPEILNYTNKAKVTVKAG 239

Query: 219 --YRNRIITNHNKLLNK---MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
             Y     T +  L      +  +DG+KTG + N  FN + +++ +D  ++AV+MG+   
Sbjct: 240 TPYEETFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKREDQRMIAVIMGVGDW 299

Query: 274 QERD 277
            ++D
Sbjct: 300 SDQD 303


>gi|312868004|ref|ZP_07728208.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis F0405]
 gi|311096408|gb|EFQ54648.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis F0405]
          Length = 413

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 22/249 (8%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHL 100
           + +A EL   P  S+I ++ +  ++   K  E  R    L+ ++T Y+IFE +  KKL L
Sbjct: 22  VVLADELEL-PAQSAIAVEADTGKILYEKDSEKKRDVGGLSTLLTTYLIFEAIHEKKLSL 80

Query: 101 NTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
              I +S+ A   N    +     E   +T EQ + AL+  +++  + A  E + GSEK 
Sbjct: 81  KDPIKLSEKALALNYIEGAGTLPMEANQYTVEQLLTALLVGNSSTAALALAEKVGGSEKS 140

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLH------------DKNQITTARDQAILGILLRKNF 205
           F   M  K  + G+Q+    NA+GL+            D+NQ+ +A D A++   L ++F
Sbjct: 141 FVEKMKQKLTEWGIQSPHLINATGLNTQTISGDPDGKEDENQL-SAYDIAVIAKHLLQDF 199

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLNKMHN----IDGIKTGYTRNSGFNIVTSLRYKDD 261
           P+  KY S     + N  I N N +L  M N    +DG++   +   G     S      
Sbjct: 200 PEVTKYTSKPTALFSNTQIENPNLMLEGMPNYRSGVDGLRVSNSNKGGITFAASTTQNGI 259

Query: 262 PIVAVVMGM 270
            ++ VV+G+
Sbjct: 260 HMITVVLGV 268


>gi|260495307|ref|ZP_05815434.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp. 3_1_33]
 gi|260197085|gb|EEW94605.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp. 3_1_33]
          Length = 418

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 126/257 (49%), Gaps = 10/257 (3%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           + ++++   K  +   K  +  YP AS+TKMM+L + F+ + +  + LN  + +SKT   
Sbjct: 163 FRAVIVGDTKGNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGNISLNDSVRISKTPLK 222

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI-SGSEKKFAILMSNKAKKIGM 171
              S + LK    F  E  I A    SAN+ + A  E++ +GS   F   M+ K +++G+
Sbjct: 223 YGGSGIALKAGQMFILEDLIKAAAVYSANNATYAIAEYVGNGSIFGFVTKMNKKLRELGL 282

Query: 172 QNTI-YKNASGLHDKNQITTARDQAILGIL-LRKNFPQYYKYFSIRKFR----YRNRI-I 224
           QN I Y   +GL  +       +    GI  L     +Y KY  I   +    + ++I I
Sbjct: 283 QNEIKYHTPAGLPTRVTKQPMDEGTARGIYKLSIEALKYKKYIEIAGIKTTKIHNDKISI 342

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            N N L+ + + + GIKTG+ + + +NI  + +++   ++ VV+G  T + RD     ++
Sbjct: 343 RNRNHLIGE-NGVYGIKTGFHKEAKYNIAVASKFEGTDVIIVVLGGETYKTRDNLVRNIL 401

Query: 285 TSFLEKKTLKHQQTHRK 301
               E  T+K+    RK
Sbjct: 402 NILSENYTVKNGLIKRK 418


>gi|187734951|ref|YP_001877063.1| Serine-type D-Ala-D-Ala carboxypeptidase [Akkermansia muciniphila
           ATCC BAA-835]
 gi|187425003|gb|ACD04282.1| Serine-type D-Ala-D-Ala carboxypeptidase [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 307

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 104/198 (52%), Gaps = 12/198 (6%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS  K++T  ++ E+       L+ ++ +  +    +P+KL  +    ++  + + A++ 
Sbjct: 96  ASTQKLVTAMVVMEHGS-----LDKKVVIQPSDTKADPTKLGFRAGEVYSRRELLNAMMI 150

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           RS NDV+ A     +GS  +FA LM+ KA+++GM N+ + N +GL   +Q +TA D A  
Sbjct: 151 RSFNDVALALARDTAGSVPRFAQLMNAKARQMGMYNSRFANPNGL-PADQYSTAIDMARC 209

Query: 198 GILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
              + +N P+       R++ +     R  ++ N NKLL +   + G+KTGYT  +G  +
Sbjct: 210 AYYVYRN-PELRNIICKRQYAFTRANGRTLLLRNTNKLLTQNPWVTGMKTGYTNAAGRCL 268

Query: 253 VTSLRYKDDPIVAVVMGM 270
           V+S       ++ VV+G 
Sbjct: 269 VSSAGVNGRHVIVVVLGC 286


>gi|260588732|ref|ZP_05854645.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
           20583]
 gi|331084099|ref|ZP_08333206.1| hypothetical protein HMPREF0992_02130 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540914|gb|EEX21483.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
           20583]
 gi|330402461|gb|EGG82031.1| hypothetical protein HMPREF0992_02130 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 340

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 104/218 (47%), Gaps = 34/218 (15%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT---- 109
           ++IV DV  N++   K  E R YPAS+TK++TL I  E L    L    QIPV +     
Sbjct: 85  AAIVKDVQNNKVLASKNAEERIYPASMTKILTLLIAVEELSD--LEEKVQIPVDEVLAEY 142

Query: 110 ------AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
                 A  Q   K+ +K+  Y         L+  S  +  TA    ISGSE+ FA  M+
Sbjct: 143 ERGASMAGFQPGEKVSVKDLLY--------GLMLPSGAECCTALACRISGSEEAFAEKMN 194

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-----R 218
            +AK++GM N+ + NASGLH++   TT  D  IL     KN   +Y+ F+ R +      
Sbjct: 195 ERAKELGMLNSHFVNASGLHEEEHYTTVTDIMILLEQAIKN-ETFYEVFTTRSYTTAPTA 253

Query: 219 YRNRIITNHNKLLNKMHNID-------GIKTGYTRNSG 249
                IT  + + +K   ++       G KTG+T  +G
Sbjct: 254 AEPNGITFESTMYDKKSTLEVTDGEILGGKTGFTNAAG 291


>gi|331092072|ref|ZP_08340903.1| hypothetical protein HMPREF9477_01546 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402273|gb|EGG81844.1| hypothetical protein HMPREF9477_01546 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 423

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 138/291 (47%), Gaps = 24/291 (8%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+IV+D+    +   K  DE RYPAS+TK++T  +  E  Q   +   ++  +   +   
Sbjct: 67  SAIVMDMKTGAILYAKGIDEERYPASITKILTALVAIENSQMTDMVKFSEESIQ--SLEP 124

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             + + +K     T +  + AL+  SAN+V+ A GE + G+ + F  +M++KAK++G  +
Sbjct: 125 GYAHIAMKAGEEITMKDALHALMLASANEVAYAIGETVGGTHENFIKMMNDKAKELGCTH 184

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY---------RNRII 224
           T + N +G+ D+   T+ARD A++    R  F        ++  +Y           RI 
Sbjct: 185 THFINTNGMFDEQHYTSARDMALIA---RAAFSHQELLDIVQTLQYTIPPTNMESEPRIF 241

Query: 225 TNHNKLL--NKMHN--IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
              +K+L   K H+    G KTGYT  +   +VT +   D  IVAV+M        D K 
Sbjct: 242 QQKHKMLLNGKYHDNRCIGGKTGYTEKAYNTLVTVMEQGDMEIVAVIMRSRRDTFEDTKK 301

Query: 281 LE--LITSFLEKKTLKHQQTHRK---DNLSSTSLKKSLMIKKLKRTYSQFK 326
           +      +F E     ++++ +    D  +  +L K++   +L R Y + K
Sbjct: 302 ICDYAFNNFREVNISANEKSDKVSDIDGEACVTLPKNIEFNQLSRQYEKDK 352


>gi|229026963|ref|ZP_04183283.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH1272]
 gi|228734350|gb|EEL85024.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH1272]
          Length = 453

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 133/268 (49%), Gaps = 35/268 (13%)

Query: 35  LFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           LF S+I+    +     P       S+I+++ N  ++   K  DE    AS+TKMM+ Y+
Sbjct: 34  LFCSMIVTFGRASAETVPAIDVEAGSAILVEANSGKILYEKNADESLAIASMTKMMSEYL 93

Query: 89  IFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           + E +   KL  + ++ +S    K +  ++ S + L+    +T ++   A++  SAN  +
Sbjct: 94  VHEAVDKGKLKWDQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYEAMVIYSANGAT 153

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--HD-------------KNQIT 189
            A  E I+G E  F  +M++K+K+ GM+N  + N++GL  HD             KN++ 
Sbjct: 154 IALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPEGTTPDEKNKM- 212

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----IITNHNKLLNKM----HNIDGI 240
           +ARD AIL   L ++FP+      I K  ++N       +TN N +L  +      +DG+
Sbjct: 213 SARDCAILAQRLIQDFPKILDTAKIPKKTFQNGGKYPIDMTNFNWMLKGLIKEYEGVDGL 272

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G     ++      +++VV+
Sbjct: 273 KTGTTPEAGDCFTGTVERNGMRLISVVI 300


>gi|110802740|ref|YP_699397.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens SM101]
 gi|110683241|gb|ABG86611.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens SM101]
          Length = 427

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 123/256 (48%), Gaps = 28/256 (10%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +E   PAS TK MT  +  E     K +LN  + + K       +++ L+E   +T E+ 
Sbjct: 44  NEKLAPASTTKTMTALLTVE-----KANLNDIVTIGKNPPLAEGTRVGLQEGDKYTVEEL 98

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + AL+ +SAND + A  E ISGSE +FA LM+ +A+++G +NT + NASGL + + +TT 
Sbjct: 99  LNALLIQSANDAAVALAEHISGSEGEFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTP 158

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT-------NHNKLLNKMH-----NIDG 239
            D A++     KN P   +      +     I++       N+NKL+++       +I  
Sbjct: 159 YDLALIMNAASKN-PIIDEITKKTVYEMPKSIVSGEPIWANNNNKLIHQTSPYYNKDIFC 217

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE--RDQKAL--------ELITSFLE 289
            KTGYT  S      + +  D  ++  ++G  T  +   D K L         L+  + +
Sbjct: 218 NKTGYTTKSRHTFTCAAKRGDRKLILTLLGYDTKDQYYEDTKNLLDYGFNNFSLVKLYSK 277

Query: 290 KKTLKHQQTHRKDNLS 305
              +K      K+NLS
Sbjct: 278 NDVIKEYYIDDKNNLS 293


>gi|229170684|ref|ZP_04298327.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH621]
 gi|228612787|gb|EEK69969.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH621]
          Length = 442

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 134/268 (50%), Gaps = 35/268 (13%)

Query: 35  LFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           LF S+++ S ++     P       S+I+++ N  ++   K  DE    AS+TKMM+ Y+
Sbjct: 23  LFCSMVVTSGSASAETVPALDVEAGSAILVEANSGKILYQKNADELLAIASMTKMMSEYL 82

Query: 89  IFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           + E +   KL  + ++ +S    K +  ++ S + L+    +T ++   A++  SAN  +
Sbjct: 83  VHEAVDKGKLKWDQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYEAMVIYSANGAT 142

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--HD-------------KNQIT 189
            A  E I+G E  F  +M++K+K+ GM+N  + N++GL  HD             KN++ 
Sbjct: 143 IALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPEGTTPDEKNKM- 201

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----IITNHNKLLNKM----HNIDGI 240
           +ARD AIL   L ++FP+      I K  ++        +TN N +L  +      +DG+
Sbjct: 202 SARDCAILAQRLIQDFPKILDTAKIPKKTFQKGGKYPIDMTNFNWMLKGLIKQYEGVDGL 261

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G     ++      +++VV+
Sbjct: 262 KTGTTPEAGDCFTGTVERNGMRLISVVI 289


>gi|169827425|ref|YP_001697583.1| hypothetical protein Bsph_1859 [Lysinibacillus sphaericus C3-41]
 gi|168991913|gb|ACA39453.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 292

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 119/241 (49%), Gaps = 18/241 (7%)

Query: 54  YSS--IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQS--KKLHLNTQIPVSK 108
           YSS  I+++++ N++   K  +E  YPASLTKMMT+ +  E + +  +++ L   I  + 
Sbjct: 41  YSSNAILVNLDDNKVLIDKNSEEVIYPASLTKMMTVLVAIEQIPNLQEEIVLGNNIFNNL 100

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
             A  + +     EK   T E  +   +  S  + S    E+I+GSE+KF  LM+ KA++
Sbjct: 101 YEANASLAGFLPNEK--LTLEDLLYGSMLPSGAEASIGLAEYIAGSERKFVNLMNEKAQQ 158

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAIL--GILLRKNFPQYY--KYFSIRKFRYRNRII 224
           +GM+NT + N +GLH  +  TT +D ++L    L    F Q Y  + +SI+        I
Sbjct: 159 LGMKNTHFMNTTGLHHSDHYTTVKDMSLLLQYALTNDEFRQVYTAERYSIKPTNRHPEGI 218

Query: 225 TNHNKLLNKM-------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           T  NK+   M         I G KTGYT ++G  + +         + V +G   +   +
Sbjct: 219 TFTNKMFQNMTTRALPGGEILGGKTGYTDDAGLCLASLATINGQEYILVTVGAEGNSRTE 278

Query: 278 Q 278
           Q
Sbjct: 279 Q 279


>gi|312897814|ref|ZP_07757230.1| D-alanyl-D-alanine carboxypeptidase domain protein [Megasphaera
           micronuciformis F0359]
 gi|310621198|gb|EFQ04742.1| D-alanyl-D-alanine carboxypeptidase domain protein [Megasphaera
           micronuciformis F0359]
          Length = 277

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 112/231 (48%), Gaps = 16/231 (6%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR---YPASLTKMMTLYIIFE 91
           L  ++ +I  ++ +      ++ +ID +  ++    Q  P    +PAS TK++T+    +
Sbjct: 16  LLWAVTVIVASAAVPTTGAEAACLIDADTGRI--LYQVNPNKWVHPASTTKIVTMLTALD 73

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
               K   L+  I +S+ AA   PS L +      T  + +  ++  S NDV+ A  E +
Sbjct: 74  KGADK---LDQPIHISQYAADTEPSVLGIAPGDKLTLREAMRGMMVVSGNDVAVAVAETL 130

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            G+   +A +M+ +A K+G  +T + N +GL      TTA D A +     K++P+ +KY
Sbjct: 131 GGTVGAYADMMNAEAAKLGATHTHFVNPNGLTAPKHYTTAVDMAKIAAYGLKHYPE-FKY 189

Query: 212 ------FSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTS 255
                 ++++    R + +   N+ L   +   DG+KTGYT  +G  +V S
Sbjct: 190 TVSLPNYTVKYLDGRTKYVETTNRFLTSGYKGADGVKTGYTDAAGVCLVAS 240


>gi|310827089|ref|YP_003959446.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium limosum KIST612]
 gi|308738823|gb|ADO36483.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium limosum KIST612]
          Length = 314

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 95/224 (42%), Gaps = 25/224 (11%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIP--VSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           YPASLTK+MT+ +I +  Q + L     +P  V    +    S          T    + 
Sbjct: 85  YPASLTKLMTVLVILD--QFEDLDHTVTLPGEVFDCLSGSGASVAGFLPGEQLTLRDLLY 142

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
             +  S  D         +GSE+ FA LM+ KA ++GM +T +KNA+GLHD    TT  D
Sbjct: 143 GCVLPSGADAVMGLACATAGSEENFAELMNGKAAELGMAHTHFKNATGLHDPGHYTTVMD 202

Query: 194 QAILGILLRKNF--PQYYKYFSIRKFRYRNRIITNH------NKLLNKMHNI---DGI-- 240
            A   +LLR     P + +  +   F Y+      H      +  LN +      DG+  
Sbjct: 203 MA---VLLRAGLKNPDFRELLT--TFDYQTEPTNRHPGGVGLSSTLNSLMGTPYPDGVTL 257

Query: 241 ---KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
              KTGYT  +G  + T         +AV  G P S E   + L
Sbjct: 258 LGGKTGYTEEAGLCLATLAEKDGREYIAVTAGAPGSHETSPRHL 301


>gi|146296825|ref|YP_001180596.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410401|gb|ABP67405.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 452

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 132/269 (49%), Gaps = 43/269 (15%)

Query: 30  LMGKILFLSIIMIS------MASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTK 82
           L+  ILF+ + + S      + S+++AK   S+I+I+ N  Q+   K    R +PAS TK
Sbjct: 18  LIFLILFIPVPVYSKEESNTLLSDINAK---SAILIEANTGQILFQKNPNSRCFPASTTK 74

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP--SKLYLKEKTYFTTEQGILALITRSA 140
           ++T  +      SK+  L+    VSK A    P  S  YL E    + +  + A++  SA
Sbjct: 75  ILTALVAL----SKEKDLDKLFKVSKNAIMIEPGSSSYYLNEGETISFQDALYAMLLISA 130

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND +    E ISGS ++F   M+  A+ IG +++ + N SGLH+    TTA D   L ++
Sbjct: 131 NDAANVIAENISGSIQEFVKEMNQFAQNIGAKDSHFVNPSGLHNPQHYTTAYD---LSLI 187

Query: 201 LRKNFPQYYKYFSIRKF----RYR-----------NRIITNHNKLLNKMHN-----IDGI 240
            R    Q YK  ++RK      Y+            +II N NKLL K         +G+
Sbjct: 188 AR----QAYKNETLRKIVSTVEYKITTASMHKKPDWQIIYNINKLLRKNSKYYYPYANGM 243

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           KTGYT  +   ++ S +  D  ++AV++ 
Sbjct: 244 KTGYTAQAKRCLIASAKKDDIDLIAVILS 272


>gi|307719458|ref|YP_003874990.1| D-alanyl-D-alanine carboxypeptidase A [Spirochaeta thermophila DSM
           6192]
 gi|306533183|gb|ADN02717.1| putative D-alanyl-D-alanine carboxypeptidase A [Spirochaeta
           thermophila DSM 6192]
          Length = 387

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 103/226 (45%), Gaps = 12/226 (5%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTY 125
           + D P   ASLTK++T Y++ + ++   L  +  +PV    A      + S   L   T 
Sbjct: 42  QADLPHPAASLTKLVTAYLVLQAMEHGLLREDLPLPVPSALARIPFPPDASLAGLTPGTT 101

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            T  Q +   +  SAND + A    ++     FA  M+   + +G  +  ++  SGL   
Sbjct: 102 LTPAQLLSLTLVYSANDAACALALLLAPDIPTFARRMNTLVQSLGYSHLSFEEPSGLSPH 161

Query: 186 NQITTARDQAILGILLRKNFPQY-YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGY 244
           N IT AR+ A+        FP    +Y S R      R   N N LL +   ++G+KTGY
Sbjct: 162 NTIT-AREIALFAADYLDRFPSAPARYHSPRAVTIGGRTYLNRNTLLGRYPGLEGLKTGY 220

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTS------QERDQKALELI 284
              SGF+IV   R     ++AV++G+         QERD +A  L+
Sbjct: 221 LEESGFHIVAYARRGPTSLIAVLLGIQAPSYWEGMQERDHQAAALL 266


>gi|253579895|ref|ZP_04857163.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848894|gb|EES76856.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 459

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 127/280 (45%), Gaps = 60/280 (21%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIV-IDVNKNQMTGFKQ---------- 71
           Y+ + +  +G ++ ++ + I  A+E  A+   S +  + ++ N+++G+            
Sbjct: 32  YLLKVVMAVG-VIAMTAVQICTAAEGTAQAAVSEVTPVSISTNEISGWPAGPEITSETGV 90

Query: 72  ---------------DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
                          DE RYPAS+TK+MTL +  E    K+  + T+        + +  
Sbjct: 91  LMDADSGTLLYSKGGDEIRYPASITKIMTLLLAVENCSLKEDVVFTETGTRDI--SWDSG 148

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
            + ++     +    + AL+ RSAN+V+    E + G+E+ F  +M+ +A +IG  NT +
Sbjct: 149 NIGMQVGEVMSMRACLYALVIRSANEVAAQIAEHVGGTEQHFVDMMNERAAQIGCTNTHF 208

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR----------------YR 220
            NASGL D +  +TA D A   +++R+           +KFR                  
Sbjct: 209 VNASGLPDPDHYSTAHDMA---LIMREGLKN-------KKFRRIIGATDYTIKPTNMNSE 258

Query: 221 NRIITNHNKLL--NKMHNIDGI---KTGYTRNSGFNIVTS 255
            R++  H+ +L     ++ DG    KTGYT  +G  +VT+
Sbjct: 259 PRVLHTHHPMLAPESSYHYDGCIGGKTGYTSEAGNTLVTA 298


>gi|293375502|ref|ZP_06621781.1| putative D-alanyl-D-alanine carboxypeptidase [Turicibacter
           sanguinis PC909]
 gi|325844936|ref|ZP_08168301.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sp. HGF1]
 gi|292645902|gb|EFF63933.1| putative D-alanyl-D-alanine carboxypeptidase [Turicibacter
           sanguinis PC909]
 gi|325488986|gb|EGC91375.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sp. HGF1]
          Length = 368

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 100/204 (49%), Gaps = 13/204 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE  Y AS+TK++T  +  E  Q     L+  + VS  A  Q  S LYL           
Sbjct: 52  DEQMYIASITKILTSIVAIENGQ-----LDEWVEVSDNATRQVGSSLYLALGDQMKLIDV 106

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-QITT 190
           I  L+ RS ND +    E + G E  F  +M+ KAK+IGM+N+I++N SGL +    ++T
Sbjct: 107 IYGLMLRSGNDGAMVIAEAVGGDEAGFVKMMNEKAKEIGMKNSIFQNPSGLDETTYNLST 166

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----IITNHNKLLNKMHNID-GIKTGY 244
           ARD AIL +    N P + +       +  ++     +  N +KL+   +    G KTG+
Sbjct: 167 ARDMAIL-MQYAMNNPIFREVTGTETHKATSKNGTPYVWHNKHKLVTGYYEYAIGGKTGF 225

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVM 268
           T  +   +VTS R  D  +V V +
Sbjct: 226 TERARRTLVTSARKDDLELVVVTL 249


>gi|325688308|gb|EGD30327.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK72]
          Length = 455

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 139/303 (45%), Gaps = 53/303 (17%)

Query: 24  IQRNIQLMGKILFLSII--------MISMASELHA--------KPKYSSIVIDVNKNQMT 67
           +++ + L+G +   S+         ++ MA +++         +PK SS+VID +   + 
Sbjct: 5   VKKKLLLLGVVFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPK-SSLVIDGSTGDVV 63

Query: 68  GFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY------L 120
                DE R PAS++K+MTLY++FE ++  K+   T I  + T   Q  + +Y      +
Sbjct: 64  WEDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVI--TATPQDQATANIYEISNNKI 121

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNA 179
                +T  + I   I  S+N  +     ++S ++   F   M+ KA+++GM NT + NA
Sbjct: 122 VAGVDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNA 181

Query: 180 SGL----------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR----- 218
           SG                 +  NQ TTARD AIL      + P+   Y +  K       
Sbjct: 182 SGAAAVSFKGYYNPQNYDNYASNQ-TTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGT 240

Query: 219 -YRNRIITNHNKLLNK---MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
            Y     T +  L      +  +DG+KTG + N  FN + +++  D  ++AV+MG+    
Sbjct: 241 PYEETFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDWS 300

Query: 275 ERD 277
           ++D
Sbjct: 301 DQD 303


>gi|197303547|ref|ZP_03168586.1| hypothetical protein RUMLAC_02269 [Ruminococcus lactaris ATCC
           29176]
 gi|197297545|gb|EDY32106.1| hypothetical protein RUMLAC_02269 [Ruminococcus lactaris ATCC
           29176]
          Length = 434

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 128/267 (47%), Gaps = 39/267 (14%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           EL+A+   S++++D +  ++  F+++  +PR  AS TK+MT  +  E     +     +I
Sbjct: 64  ELYAR---SAVLMDGDSGRIL-FEKNGSDPRPMASTTKIMTCILALEASDPSR-----KI 114

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
            VS  AA+Q    L + E   F  +  + +L+  S ND + A  E I GS + FA  M+ 
Sbjct: 115 TVSSQAASQPKVHLGMTEGQSFYLKDLLYSLMLESHNDAAVAIAEGIDGSVEAFAQRMNQ 174

Query: 165 KAKKIGMQNTIYKNASGLHDK----NQITTARDQAILGILLRKNF---PQYYKYFSI--- 214
           KA++IG +NT + + +GL  +    N  TTAR+   L ++LR      PQ   +  I   
Sbjct: 175 KAEEIGCKNTYFISPNGLDAQDSQSNHHTTARE---LALILRYCIMVSPQREAFLKITRT 231

Query: 215 ---------RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
                    + F Y      NHN  LN M      KTG+T ++G+  V +L+  D   + 
Sbjct: 232 MQYTFQDCEKNFSYS---CNNHNAFLNMMEGALTGKTGFTADAGYCYVGALQRDDRTFIV 288

Query: 266 VVMGMPTSQERDQKALE---LITSFLE 289
            ++       R+ K ++   L+T  LE
Sbjct: 289 ALLACGWPNNRNYKWMDTKKLMTYGLE 315


>gi|256027623|ref|ZP_05441457.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. D11]
 gi|289765581|ref|ZP_06524959.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. D11]
 gi|289717136|gb|EFD81148.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. D11]
          Length = 407

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 126/257 (49%), Gaps = 10/257 (3%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           + ++++   K  +   K  +  YP AS+TKMM+L + F+ + +  + LN  + +SKT   
Sbjct: 152 FRAVIVGDTKGNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGNISLNDSVRISKTPLK 211

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI-SGSEKKFAILMSNKAKKIGM 171
              S + LK    F  E  I A    SAN+ + A  E++ +GS   F   M+ K +++G+
Sbjct: 212 YGGSGIALKAGQMFILEDLIKAAAVYSANNATYAIAEYVGNGSIFGFVTKMNKKLRELGL 271

Query: 172 QNTI-YKNASGLHDKNQITTARDQAILGIL-LRKNFPQYYKYFSIRKFR----YRNRI-I 224
           QN I Y   +GL  +       +    GI  L     +Y KY  I   +    + ++I I
Sbjct: 272 QNEIKYHTPAGLPTRVTKQPMDEGTARGIYKLSIEALKYKKYIEIAGIKTTKIHNDKISI 331

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            N N L+ + + + GIKTG+ + + +NI  + +++   ++ VV+G  T + RD     ++
Sbjct: 332 RNRNHLIGE-NGVYGIKTGFHKEAKYNIAVASKFEGTDVIIVVLGGETYKTRDNLVRNIL 390

Query: 285 TSFLEKKTLKHQQTHRK 301
               E  T+K+    RK
Sbjct: 391 NILSENYTVKNGLIKRK 407


>gi|302386883|ref|YP_003822705.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           saccharolyticum WM1]
 gi|302197511|gb|ADL05082.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           saccharolyticum WM1]
          Length = 431

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 116/241 (48%), Gaps = 19/241 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
            ++++D +   +   K  + RY PAS+TK+MT  ++ E     K  L   +  SK A T 
Sbjct: 96  GAVLMDASTGTLLYSKNGDTRYYPASITKLMTALLVAE-----KCSLPDTVTFSKAATTN 150

Query: 114 NPSK---LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             S    L L E    T EQ +  L+ +SAN+V+    E +SGS   F+ LM+ +AK++G
Sbjct: 151 LESGAVTLGLSEGDKLTVEQCLYGLMLKSANEVANGLAEHVSGSISAFSALMNVRAKELG 210

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSIRKFRYRN---RIIT 225
              T + N +GL+     TTA D A++     +N    +     S +    +N   R ++
Sbjct: 211 CTGTNFVNPNGLNSSGHYTTAHDMALIARAAFQNETVKKVTSTLSYQIPATKNASARTVS 270

Query: 226 NHNKLLNKMH-----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
             +K+L          + G KTGYT  +G  +VT +      ++AV+M   ++   D K+
Sbjct: 271 MGHKMLYPGDSRYYPGVIGGKTGYTSLAGNTLVTCVEKNGIRLIAVIMKSKSTHYADTKS 330

Query: 281 L 281
           L
Sbjct: 331 L 331


>gi|326802681|ref|YP_004320499.1| serine-type D-Ala-D-Ala carboxypeptidase [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650727|gb|AEA00910.1| serine-type D-Ala-D-Ala carboxypeptidase [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 455

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 115/228 (50%), Gaps = 30/228 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-----LYLKEKTYFTTEQGI 132
           ASLTK+++LY+I++ L   KL L+  +PVS   A Q+  +       +     ++ +Q I
Sbjct: 74  ASLTKLLSLYVIYDQLAQGKLSLDEAVPVSPALAQQSQVEGLSNVPLVAGPANYSVDQLI 133

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------- 183
            A+I  SAN  + A  E ++GSE  F  LM+ K  ++G+ +    +ASGL          
Sbjct: 134 DAVIIASANSATVALAEKVAGSEDHFIDLMAQKLDQLGVDDYNLVSASGLRGELRADARP 193

Query: 184 ------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NRIITNHNKLLN 232
                 ++N++ +A+  A++   L K++P       +++  ++        +TN N+LL 
Sbjct: 194 GQFAESEENRV-SAKSLALVVQRLLKDYPDIQSRAQVKEKVFQVAPDWQVTMTNSNQLLP 252

Query: 233 KM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
            M     +I G+KTG    +G+ +V +      P++ V +G  ++++R
Sbjct: 253 GMTYGRQDITGLKTGTELGAGYCLVATSFINQRPVILVTLGAESNEDR 300


>gi|324990581|gb|EGC22517.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK353]
          Length = 455

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 142/304 (46%), Gaps = 55/304 (18%)

Query: 24  IQRNIQLMGKILFLSII---------MISMASELHA--------KPKYSSIVIDVNKNQM 66
           +++ + L+G I+FL+ +         ++ MA +++         +PK SS+VID +   +
Sbjct: 5   VKKKLLLLG-IVFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPK-SSLVIDGSTGDV 62

Query: 67  TGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY------ 119
                 DE R PAS++K+MTLY++FE ++  K+   T I  + T   Q  + +Y      
Sbjct: 63  VWEDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVI--TATPQDQATANIYEISNNK 120

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKN 178
           +     +T  + I   I  S+N  +     ++S ++   F   M+ KA+++GM NT + N
Sbjct: 121 IVAGVDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFN 180

Query: 179 ASGL----------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR---- 218
           ASG                 +  NQ TTARD AIL      + P+   Y +  K      
Sbjct: 181 ASGAAAVSFKGYYNPQNYDNYASNQ-TTARDLAILAYNFVNHHPEILNYTNKAKVTVKAG 239

Query: 219 --YRNRIITNHNKLLNK---MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
             Y     T +  L      +  +DG+KTG + N  FN + +++  D  ++AV+MG+   
Sbjct: 240 TPYEETFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDW 299

Query: 274 QERD 277
            ++D
Sbjct: 300 SDQD 303


>gi|332365993|gb|EGJ43749.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK1059]
          Length = 455

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 142/304 (46%), Gaps = 55/304 (18%)

Query: 24  IQRNIQLMGKILFLSII---------MISMASELHA--------KPKYSSIVIDVNKNQM 66
           +++ + L+G I+FL+ +         ++ MA +++         +PK SS+VID +   +
Sbjct: 5   VKKKLLLLG-IVFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPK-SSLVIDGSTGDV 62

Query: 67  TGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY------ 119
                 DE R PAS++K+MTLY++FE ++  K+   T I  + T   Q  + +Y      
Sbjct: 63  VWEDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVI--TATPQDQATANIYEISNNK 120

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKN 178
           +     +T  + I   I  S+N  +     ++S ++   F   M+ KA+++GM NT + N
Sbjct: 121 IVAGVDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFN 180

Query: 179 ASGL----------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR---- 218
           ASG                 +  NQ TTARD AIL      + P+   Y +  K      
Sbjct: 181 ASGAAAVSFKGYYNPQNYDNYASNQ-TTARDLAILAYNFVNHHPEILNYTNKAKVTVKAG 239

Query: 219 --YRNRIITNHNKLLNK---MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
             Y     T +  L      +  +DG+KTG + N  FN + +++  D  ++AV+MG+   
Sbjct: 240 TPYEETFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDW 299

Query: 274 QERD 277
            ++D
Sbjct: 300 SDQD 303


>gi|325694037|gb|EGD35955.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK150]
          Length = 455

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 142/304 (46%), Gaps = 55/304 (18%)

Query: 24  IQRNIQLMGKILFLSII---------MISMASELHA--------KPKYSSIVIDVNKNQM 66
           +++ + L+G I+FL+ +         ++ MA +++         +PK SS+VID +   +
Sbjct: 5   VKKKLLLLG-IVFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPK-SSLVIDGSTGDV 62

Query: 67  TGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY------ 119
                 DE R PAS++K+MTLY++FE ++  K+   T I  + T   Q  + +Y      
Sbjct: 63  VWEDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVI--TATPQDQATANIYEISNNK 120

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKN 178
           +     +T  + I   I  S+N  +     ++S ++   F   M+ KA+++GM NT + N
Sbjct: 121 IVAGVDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFN 180

Query: 179 ASGL----------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR---- 218
           ASG                 +  NQ TTARD AIL      + P+   Y +  K      
Sbjct: 181 ASGAAAVSFKGYYNPQNYDNYASNQ-TTARDLAILAYNFVNHHPEILNYTNKAKVTVKAG 239

Query: 219 --YRNRIITNHNKLLNK---MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
             Y     T +  L      +  +DG+KTG + N  FN + +++  D  ++AV+MG+   
Sbjct: 240 TPYEETFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDW 299

Query: 274 QERD 277
            ++D
Sbjct: 300 SDQD 303


>gi|307243700|ref|ZP_07525840.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492909|gb|EFM64922.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus
           stomatis DSM 17678]
          Length = 419

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 109/217 (50%), Gaps = 14/217 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+IV D + N++   K  +   P ASLTKMMTL + F+ +  KK+     + +  +   +
Sbjct: 39  SAIVSDTDTNRIVYEKNADQVVPMASLTKMMTLLLTFDAISQKKVDYKDIVTILPSDVNR 98

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             + + L      + E+ +  ++  SAND + A    +S +  KF   M+ KAK+IGM+N
Sbjct: 99  VGTNIKLTAGEQISLEELMKGMMIVSANDAALAISHHVSTTYSKFVEDMNAKAKEIGMEN 158

Query: 174 TIYKNASGLHDKNQI----------TTARDQAILGILLRKNFP-QYYKYFSIRKFRYRNR 222
           T++ N +GL     +          T+ARD  +L   L   +P Q     ++  +    +
Sbjct: 159 TVFYNPNGLPTSINVGGKPVGVENKTSARDVLVLSKYLYDKYPNQLTAITNMSSYVNPKK 218

Query: 223 IIT--NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
            I   N N LL  + N+DG+KTG+T  +G+ +  S++
Sbjct: 219 AINEENTNPLLPLIANVDGLKTGFTGAAGYCLAYSMK 255


>gi|169828716|ref|YP_001698874.1| penicillin-binding protein dacF [Lysinibacillus sphaericus C3-41]
 gi|168993204|gb|ACA40744.1| Penicillin-binding protein dacF precursor (D-alanyl-D-alanine
           carboxypeptidase) [Lysinibacillus sphaericus C3-41]
          Length = 266

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 94/196 (47%), Gaps = 19/196 (9%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGIL 133
           YPASLTK+MT  +  E   +  L + T +     A    QN S        + T E  + 
Sbjct: 47  YPASLTKIMTAIVAIE--MTDDLQMQTIVKPQTIAKYTAQNASMAGFHAGDFVTIEDLLY 104

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
             +  S  D S    E I+GSE +F   M+NKA+++GM  T + N SGLH++  +++ +D
Sbjct: 105 GTLLASGADASGTLAEAIAGSEDEFVTYMNNKAQELGMDTTHFVNTSGLHEEAHVSSLQD 164

Query: 194 QAILGILLRKNF--PQYYKYFSIRKFRYRNRIITN---HNKLLNKMHNIDGI----KTGY 244
              +  LLR     P +Y+ F+ +   Y   + T     N L  +M  +DG     KTGY
Sbjct: 165 ---ISKLLRYALENPTFYRIFTSKT--YTTHVPTALLISNSLFTRMPGMDGTILGGKTGY 219

Query: 245 TRNSGFNIVTSLRYKD 260
           T  +G   + SL  KD
Sbjct: 220 TPEAGL-CLASLMEKD 234


>gi|47570219|ref|ZP_00240872.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus
           G9241]
 gi|47553125|gb|EAL11523.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus
           G9241]
          Length = 338

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 17/229 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S+I+ID +  ++   K +E P   A+L+K+MT YI  E L    + L+  + +S     A
Sbjct: 37  SAILIDAHSGEVVYKKNEETPIQSATLSKLMTEYITLEQLNEGTIQLDEVVKISNEVFRA 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             +P ++  K+KT  T    I AL+    N  + A  E I+G+E  F  LM+ KAK + +
Sbjct: 97  ETSPIQVTSKDKT--TVRDLIHALLLTGNNRSALALAEHIAGNEDNFTQLMNKKAKHLKL 154

Query: 172 -QNTIYKNASGL-HDKNQI--TTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIIT 225
            Q++ + NA+G+ +D N++  TTA + A L   L  +FP        +  +F ++N  + 
Sbjct: 155 SQSSPFLNATGMNNDTNKLSTTTATEVAKLATQLVTDFPDVLNVTKLTSYQFTFKNTKVF 214

Query: 226 NHNKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N NK+   LN   K   +DG++T ++ N  ++ V++ +  D  +++V++
Sbjct: 215 NTNKMIYSLNKNIKHQGVDGLQTSFSNNGNYSFVSTAKRGDTRLISVIL 263


>gi|261417877|ref|YP_003251559.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
           sp. Y412MC61]
 gi|261374334|gb|ACX77077.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
           sp. Y412MC61]
          Length = 382

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 113/228 (49%), Gaps = 18/228 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE--PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S+I+I+ +  ++  F +D    R  AS+TK+MT  +  E   S K+  +  + VS  A  
Sbjct: 36  SAILIEQHSGRVL-FAKDAYTKRRIASITKIMTAILAIE---SGKM--DDTVTVSARAVR 89

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S +YL++         +  L+ RS ND + A  E + GS + F  LM+ KA +IGM+
Sbjct: 90  TEGSSIYLRQGEKIKLRDLVYGLMLRSGNDAAVAIAEHVGGSVEGFVFLMNQKAAEIGMR 149

Query: 173 NTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-------RNRII 224
           +T + N  GL D +N  +TA D A+L     KN  ++ +    + +R          R+ 
Sbjct: 150 DTEFANPHGLDDAENHYSTAYDMALLMQYAMKN-KEFRRISGTKVYRAPAPPGEDGARVW 208

Query: 225 TNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
            N NKLL  ++    G KTGYT+ +   +VT+       ++AV +  P
Sbjct: 209 RNKNKLLTSLYEYCTGGKTGYTKRAHRTLVTTASKGGIDLIAVTLDAP 256


>gi|167040728|ref|YP_001663713.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X514]
 gi|166854968|gb|ABY93377.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X514]
          Length = 421

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 120/253 (47%), Gaps = 26/253 (10%)

Query: 35  LFLSIIMIS-MASELHAKPKY---SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYII 89
           LF+ ++ I+ + + +   P+    +++++D    Q+   K    R YPAS TK++T  I 
Sbjct: 11  LFILVVQITPVYANVPPPPEIVGPTAVLMDFTTGQVLYDKNMHKRMYPASTTKILTAIIA 70

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            E     K +LN  +  S      + + ++L      T EQ + A++ +SAND + A  E
Sbjct: 71  IE-----KGNLNDIVTASNNVTKIDGNSIFLSPGEQLTLEQLLYAIMLQSANDAAIAIAE 125

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN----- 204
            I GS + FA +M+ KAK+IG  ++ + N +GL D N  +T  D A++     +N     
Sbjct: 126 HIGGSVENFAKMMNEKAKEIGAYDSHFVNPNGLPDDNHYSTPYDMALIARYAMQNPEFRK 185

Query: 205 --------FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
                    P   K+  +R     NR+I   +    +    DG+KTG T  +G  +  S 
Sbjct: 186 IVTTIHYQIPPTNKFDKVRDLWLSNRLIKPSSF---RYEGADGVKTGDTVAAGQVLAASA 242

Query: 257 RYKDDPIVAVVMG 269
                 +++V+MG
Sbjct: 243 TRDGRRLISVIMG 255


>gi|327458687|gb|EGF05035.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK1057]
          Length = 455

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 142/304 (46%), Gaps = 55/304 (18%)

Query: 24  IQRNIQLMGKILFLSII---------MISMASELHA--------KPKYSSIVIDVNKNQM 66
           +++ + L+G I+FL+ +         ++ MA +++         +PK SS+VID +   +
Sbjct: 5   VKKKLLLLG-IVFLTSLAPLAARADELVDMAKKMYPHDNVQTINRPK-SSLVIDGSTGDV 62

Query: 67  TGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY------ 119
                 DE R PAS++K+MTLY++FE ++  K+   T I  + T   Q  + +Y      
Sbjct: 63  VWEDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVI--TATPQDQATANIYEISNNK 120

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKN 178
           +     +T  + I   I  S+N  +     ++S ++   F   M+ KA+++GM NT + N
Sbjct: 121 IVAGVDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFN 180

Query: 179 ASGL----------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR---- 218
           ASG                 +  NQ TTARD AIL      + P+   Y +  K      
Sbjct: 181 ASGAAAVSFKGYYNPQNYDNYASNQ-TTARDLAILAYNFVNHHPEILNYTNKAKVTVKAG 239

Query: 219 --YRNRIITNHNKLLNK---MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
             Y     T +  L      +  +DG+KTG + N  FN + +++  D  ++AV+MG+   
Sbjct: 240 TPYEETFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDW 299

Query: 274 QERD 277
            ++D
Sbjct: 300 SDQD 303


>gi|327489460|gb|EGF21253.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK1058]
          Length = 451

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 123/260 (47%), Gaps = 37/260 (14%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +PK SS+VID +   +      DE R PAS++K+MTLY++FE ++  K+   T I  + T
Sbjct: 44  RPK-SSLVIDGSTGDVVWEDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVI--TAT 100

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK-FAILM 162
              Q  + +Y      +     +T  + I   I  S+N  +     ++S ++   F   M
Sbjct: 101 PQDQATANIYEISNNKIVAGVDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRM 160

Query: 163 SNKAKKIGMQNTIYKNASGL----------------HDKNQITTARDQAILGILLRKNFP 206
           + KA+++GM NT + NASG                 +  NQ TTARD AIL      + P
Sbjct: 161 NAKAQELGMTNTKWFNASGAAAVSFKGYYNPQNYDNYASNQ-TTARDLAILAYNFVNHHP 219

Query: 207 QYYKYFSIRKFR------YRNRIITNHNKLLNK---MHNIDGIKTGYTRNSGFNIVTSLR 257
           +   Y +  K        Y     T +  L      +  +DG+KTG + N  FN + +++
Sbjct: 220 EILDYTNKAKVTVKAGTPYEETFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIK 279

Query: 258 YKDDPIVAVVMGMPTSQERD 277
            +D  ++AV+MG+    ++D
Sbjct: 280 REDQRMIAVIMGVGDWSDQD 299


>gi|154684528|ref|YP_001419689.1| DacA [Bacillus amyloliquefaciens FZB42]
 gi|154350379|gb|ABS72458.1| DacA [Bacillus amyloliquefaciens FZB42]
          Length = 443

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 124/242 (51%), Gaps = 28/242 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLN-TQIP---VSKT 109
           ++I+I+ +  ++   K  + R P AS+TKMMT Y++ E ++  K+  + T  P   V + 
Sbjct: 43  AAIMIEASSGKILYSKNADKRLPIASMTKMMTEYLLLEAIKEGKVKWDQTYTPDDYVYEI 102

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +   + S + L++   +T ++   A+   SAN  + A  E ++G+E KF   M+ KAK++
Sbjct: 103 SQDNSLSNVPLRKDGKYTVKELYQAMAIYSANGAAIAVAEILAGTETKFVAEMNAKAKEL 162

Query: 170 GMQNTIYKNASG-----LHDK---------NQITTARDQAILGILLRKNFPQYYKYFSIR 215
           GM N  +KNA+G     LH K             +A+D A+L   L  ++P+  K  SI 
Sbjct: 163 GMTNYDFKNATGLVNEDLHGKQPQGEGVKEESEVSAKDMALLADRLITDYPEVLKTTSIA 222

Query: 216 KFRYRNRI-----ITNHN----KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           K ++R        + N N     L+++   +DG+KTG T ++G    ++ +     ++ V
Sbjct: 223 KTKFRAGTDDEMDMPNWNFMLKGLVSEYPGVDGLKTGSTDSAGSCFTSTAQRNGMRVITV 282

Query: 267 VM 268
           V+
Sbjct: 283 VL 284


>gi|56420821|ref|YP_148139.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus kaustophilus
           HTA426]
 gi|56380663|dbj|BAD76571.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus kaustophilus
           HTA426]
          Length = 382

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 113/228 (49%), Gaps = 18/228 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE--PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S+I+I+ +  ++  F +D    R  AS+TK+MT  +  E   S K+  +  + VS  A  
Sbjct: 36  SAILIEQHSGRVL-FAKDAYTKRRIASITKIMTAILAIE---SGKM--DDTVTVSARAVR 89

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S +YL++         +  L+ RS ND + A  E + GS + F  LM+ KA +IGM+
Sbjct: 90  TEGSSIYLRQGEKIKLRDLVYGLMLRSGNDAAVAIAEHVGGSVEGFVFLMNQKAAEIGMR 149

Query: 173 NTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-------RNRII 224
           +T + N  GL D +N  +TA D A+L     KN  ++ +    + +R          R+ 
Sbjct: 150 DTEFANPHGLDDAENHYSTAYDMALLMQYAMKN-KEFRRISGTKVYRAPAPPGEDGARVW 208

Query: 225 TNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
            N NKLL  ++    G KTGYT+ +   +VT+       ++AV +  P
Sbjct: 209 RNKNKLLTSLYEYCTGGKTGYTKRAHRTLVTTASKGGIDLIAVTLDAP 256


>gi|313897406|ref|ZP_07830949.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp.
           HGF2]
 gi|312957776|gb|EFR39401.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp.
           HGF2]
          Length = 327

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 23/207 (11%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
           +DE +  AS++K+MT  I  E+ Q     L+    V         S +YLK+    T   
Sbjct: 39  KDEKQSVASISKIMTAVIAIEHGQ-----LDESFAVDDEINKAYGSSVYLKQGQQVTMRD 93

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--HDKNQI 188
            +  L+ RS ND +    + ++GS++ F  LM++KA +IGM NT + N SGL   D   I
Sbjct: 94  LLYGLMLRSGNDAAVEIAKHVAGSQEAFVELMNHKAAEIGMSNTTFSNPSGLDEEDGGNI 153

Query: 189 TTARDQAILGILLRKN-------FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIK 241
           +TA D A+L     KN         +YY   +    R++N+     N+LL       G K
Sbjct: 154 STANDMAVLMSYAMKNKEFRTITGSKYYT--TDWNMRWKNK-----NRLLFDYPFTVGGK 206

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           TG+T+ +G  +V++  +  D + ++V+
Sbjct: 207 TGFTKKAGRTLVSAAEH--DGVESIVV 231


>gi|315186124|gb|EFU19886.1| Serine-type D-Ala-D-Ala carboxypeptidase [Spirochaeta thermophila
           DSM 6578]
          Length = 387

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 103/226 (45%), Gaps = 12/226 (5%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTY 125
           + D P   ASLTK++T Y+  + ++   L  +  +PV    A      + S   L   T 
Sbjct: 42  QADLPHPAASLTKLVTAYLALQAVEDGLLQEDALLPVPSALARIPFPPDASLAGLAPGTT 101

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            T  Q +   +  SAND + A    ++     FA  M+     +G  +  ++  SGL  +
Sbjct: 102 LTPAQLLSLTLIYSANDAAYALALLLAPDIPAFASRMNRLVHAMGYTHLFFEEPSGLSPR 161

Query: 186 NQITTARDQAILGILLRKNFPQY-YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGY 244
           N IT AR+ A+        FP    +Y + R      R   N N LL +   ++G+KTGY
Sbjct: 162 NTIT-AREIALFAADYLDRFPSAPARYHAPRALTVGGRTYLNRNTLLGRYPGLEGLKTGY 220

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTS------QERDQKALELI 284
              SGF+IV   R     ++AV++G+         QERD++A  L+
Sbjct: 221 LEESGFHIVAYARRGPTSLIAVLLGIQAPGYWEGMQERDRQAAALL 266


>gi|15614136|ref|NP_242439.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Bacillus halodurans C-125]
 gi|10174190|dbj|BAB05292.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Bacillus halodurans C-125]
          Length = 382

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 98/201 (48%), Gaps = 12/201 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MT  +  E        ++  + VS  A     S LYL+          +  L+ 
Sbjct: 61  ASITKIMTALLAIE-----SGRMDEWVKVSSNAEGTEGSSLYLRAGEKIKLSDLVYGLML 115

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAI 196
           RS ND + A  E + GS   F  +M+ KA+++GM NT+++N  GL D ++  ++A D A+
Sbjct: 116 RSGNDAAVAIAEHVGGSMDGFVYMMNQKAEELGMSNTVFQNPHGLDDHEDHYSSAYDMAL 175

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRN----RIITNHNKLLNKMHNID-GIKTGYTRNSGFN 251
           L      N   Y +    +  R  N    R+  N N+LL +++    G KTGYT+ +   
Sbjct: 176 LTRYAMNN-ETYQEISGTKTHRVDNGEQIRVWKNKNRLLTQLYKYSTGGKTGYTKRAKRT 234

Query: 252 IVTSLRYKDDPIVAVVMGMPT 272
           +V++    D  ++ V +  P+
Sbjct: 235 LVSTASKDDLDLIVVTLNAPS 255


>gi|296332253|ref|ZP_06874715.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674955|ref|YP_003866627.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150567|gb|EFG91454.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413199|gb|ADM38318.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 382

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 113/236 (47%), Gaps = 13/236 (5%)

Query: 55  SSIVIDVNKNQMTGFKQDE--PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S+IVID    ++  F +DE   R  AS+TK+MT  +  E   S K+  +  + VS  A  
Sbjct: 35  SAIVIDGASGRVL-FAKDEHEKRRIASITKIMTAVLAIE---SGKM--DETVTVSANAVR 88

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S +YL E      +  +  L+ RS ND + A  E + GS   F  +M+ KA+++GM+
Sbjct: 89  TEGSAIYLTEGQKVKLKDLVYGLMLRSGNDAAVAIAEHVGGSLDGFVYMMNQKAEQLGME 148

Query: 173 NTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFS--IRKFRYRNRIITNHNK 229
           NT ++N  GL D +N  +TA D A+L     K    Y K     I K      +  N NK
Sbjct: 149 NTRFQNPHGLDDHENHYSTAYDMALLTKYAMK-LKDYQKISGTKIYKAETMESVWKNKNK 207

Query: 230 LLNKMHNID-GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           LL  ++    G KTGYT+ +   +V++       ++AV +  P   +   K    +
Sbjct: 208 LLTMLYRYSTGGKTGYTKLAKRTLVSTASKDGIDLIAVTINDPDDWDDHMKMFNYV 263


>gi|330838298|ref|YP_004412878.1| Serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena
           ATCC 35185]
 gi|329746062|gb|AEB99418.1| Serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena
           ATCC 35185]
          Length = 379

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 104/224 (46%), Gaps = 30/224 (13%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D+  YPAS+TKMMT  +  E   S +  L         A T  P    ++       EQ 
Sbjct: 152 DKREYPASMTKMMTCILSVE---SGRADL---------AVTITPFAADVETTRVRPGEQA 199

Query: 132 ILALITR-----SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
            L  +TR     S N  + A  E + GSE +FA +M+ KA++IG  +T + N +G+ D N
Sbjct: 200 RLRDLTRQMMLISDNGAALAIAETLGGSEAQFAAMMNRKAREIGAFHTHFVNPNGMPDAN 259

Query: 187 QITTARDQAILGILLRKNFPQYYKYFS--------IRKFRYRNRIITNHNKLLNKMHNID 238
             +TA D A++     +N P++ K           ++   Y+     N N LL       
Sbjct: 260 HYSTAHDIALIAAYGLRN-PEFRKIVGTKASTIYYLQPAGYKT-YCENTNALLYSYPGCT 317

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           G+KTG+TR +G  +  S    D  ++AVVM    S + D +A E
Sbjct: 318 GLKTGWTRAAGGCLAASAVRGDTELIAVVM---HSDDEDTRASE 358


>gi|229030238|ref|ZP_04186295.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
 gi|228731082|gb|EEL82007.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
          Length = 338

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 132/254 (51%), Gaps = 27/254 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S+I+ID N  ++   K +E P   A+L+K+MT YI  E L   K+ L+  + +S     A
Sbjct: 37  SAILIDANSGEVVYKKNEEIPIQSATLSKLMTEYIAMEQLNEGKIQLDELVKISNEVFRA 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++P ++  K++T  T    + AL     N  + A  E I+G+E  F +LM+  A ++ +
Sbjct: 97  EKSPIQVTSKDQT--TVRDLLHALFLTGNNRSALALAEHIAGNEGNFTLLMNENATQLKL 154

Query: 172 -QNTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIIT 225
            Q + + NA+G++   +K   TTA D A L   L  +FP        +  +F +++  + 
Sbjct: 155 SQPSPFLNATGMNNDTNKQSTTTAIDVAKLATQLVTDFPDVLNITKLTSYQFTFKDSKVF 214

Query: 226 NHNKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           N NK+   LN   K+  +DG++T ++ N  ++ V++    D  +++V++   +S+E    
Sbjct: 215 NTNKMIYSLNKNIKLQGVDGLQTSFSTNGNYSFVSTAHRGDTRLISVILD--SSEEN--- 269

Query: 280 ALELITSFLEKKTL 293
                ++F+E K L
Sbjct: 270 -----STFIETKKL 278


>gi|52080833|ref|YP_079624.1| D-alanyl-D-alanine carboxypeptidase [Bacillus licheniformis ATCC
           14580]
 gi|52786204|ref|YP_092033.1| DacB [Bacillus licheniformis ATCC 14580]
 gi|319645208|ref|ZP_07999441.1| DacB protein [Bacillus sp. BT1B_CT2]
 gi|52004044|gb|AAU23986.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*)
           [Bacillus licheniformis ATCC 14580]
 gi|52348706|gb|AAU41340.1| DacB [Bacillus licheniformis ATCC 14580]
 gi|317393017|gb|EFV73811.1| DacB protein [Bacillus sp. BT1B_CT2]
          Length = 384

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 124/256 (48%), Gaps = 23/256 (8%)

Query: 29  QLMGKILFLSIIMISMAS-----ELHAKPKYSSIVIDVNKNQMTGFKQDE--PRYPASLT 81
           Q    I+  S++  S  +      LH   K S+IV+D    ++  F +DE   R  AS+T
Sbjct: 7   QAAAAIMICSLLCSSYETAQAQPSLHISAK-SAIVMDGQSGRVL-FAKDEHEKRRIASIT 64

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E   S KL  +  + VS  A     S +YL        +  +  L+ RS N
Sbjct: 65  KIMTAILAVE---SGKL--DETVTVSDRAVRTEGSSIYLTSGQKVKLKDLVYGLMLRSGN 119

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGIL 200
           D + A  E + GS + F  +M+ KA ++GM+NT+++N  GL D  +  ++A D A+L   
Sbjct: 120 DAAVAIAEHVGGSLEGFVYMMNQKAAELGMENTLFRNPHGLDDHPDHYSSAYDMALLTKY 179

Query: 201 LRKNFPQYYKYFSIRKFRYRNR----IITNHNKLLNKMHNID-GIKTGYTRNSGFNIVTS 255
              N  + YK  +  K RY+      I  N NKLL  ++    G KTGYT+ +   +V++
Sbjct: 180 AMTN--ETYKKIAGTK-RYKAETMQGIWRNKNKLLTGLYKYSTGGKTGYTKLAKRTLVST 236

Query: 256 LRYKDDPIVAVVMGMP 271
                  ++AV +  P
Sbjct: 237 SSKDGTDLIAVTINAP 252


>gi|260888386|ref|ZP_05899649.1| serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena
           ATCC 35185]
 gi|260861922|gb|EEX76422.1| serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena
           ATCC 35185]
          Length = 354

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 104/224 (46%), Gaps = 30/224 (13%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D+  YPAS+TKMMT  +  E   S +  L         A T  P    ++       EQ 
Sbjct: 127 DKREYPASMTKMMTCILSVE---SGRADL---------AVTITPFAADVETTRVRPGEQA 174

Query: 132 ILALITR-----SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
            L  +TR     S N  + A  E + GSE +FA +M+ KA++IG  +T + N +G+ D N
Sbjct: 175 RLRDLTRQMMLISDNGAALAIAETLGGSEAQFAAMMNRKAREIGAFHTHFVNPNGMPDAN 234

Query: 187 QITTARDQAILGILLRKNFPQYYKYFS--------IRKFRYRNRIITNHNKLLNKMHNID 238
             +TA D A++     +N P++ K           ++   Y+     N N LL       
Sbjct: 235 HYSTAHDIALIAAYGLRN-PEFRKIVGTKASTIYYLQPAGYKT-YCENTNALLYSYPGCT 292

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           G+KTG+TR +G  +  S    D  ++AVVM    S + D +A E
Sbjct: 293 GLKTGWTRAAGGCLAASAVRGDTELIAVVM---HSDDEDTRASE 333


>gi|260890742|ref|ZP_05902005.1| putative D-alanyl-D-alanine carboxypeptidase [Leptotrichia
           hofstadii F0254]
 gi|260859620|gb|EEX74120.1| putative D-alanyl-D-alanine carboxypeptidase [Leptotrichia
           hofstadii F0254]
          Length = 423

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 132/271 (48%), Gaps = 10/271 (3%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMM 84
           +R+ +++  + FL++  +S AS        S ++ D+N N +        R  AS+TK+M
Sbjct: 20  RRSKKIIMSMAFLTVSALSFASGEDYYDYKSLLIGDINGNIIKEDNSSAVRPLASVTKIM 79

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T  +  + +++ ++    ++ VS  AA+  P  + L     +T    + A I +S+N+ +
Sbjct: 80  TSILTLDKIKNGQISYEDKVTVSAKAASV-PYGIKLTAGKQYTVRDLLKATIIKSSNNAA 138

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT-----ARDQAILGI 199
            A  E++ G    F   M+ KA+  G+ +  Y +  GL      +      A+D   L  
Sbjct: 139 YALAEYVGGDVSNFVHSMNEKARSYGLNSLRYCSPHGLPPSYTGSCMDQGNAKDLYKLAQ 198

Query: 200 LLRKNFPQYYKYFSIRKFRY---RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           +  K++ +Y   FS  K  Y    N  +T+ N LL  +  +DGIKTGY   +G NIV + 
Sbjct: 199 ITLKDYSEYLN-FSKNKTDYVDNGNTKVTSTNALLGNVLGVDGIKTGYHDAAGSNIVLTA 257

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSF 287
              +D ++A+++G   +++R+    + I  +
Sbjct: 258 NRGNDRMIAIILGSNRAKDRNAIGAKEINDY 288


>gi|258515621|ref|YP_003191843.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779326|gb|ACV63220.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 381

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 127/251 (50%), Gaps = 22/251 (8%)

Query: 34  ILFLSIIMISMASELHA---KPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           IL L+ +++S+ +   A   +P  S+   +++D    Q+   K+ D+ R+PASLTK+MT 
Sbjct: 8   ILALAAVILSLTNTSIAYAQEPVLSADAAVLMDSATGQVFFAKEPDKRRFPASLTKIMTA 67

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQN-PSKLYLKEKTYFTTEQGILALITRSANDVST 145
            +  E         N  + +SK AA+ +  S + L+     T E  + A +  SAND + 
Sbjct: 68  LVALENGDP-----NDVVKISKKAASVSMGSVIDLRAGEEITLENLLKAALVCSANDSTV 122

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E + G+ + F ++M+ +A   G  NT Y N +G    N  TTA D A++     +N 
Sbjct: 123 AIAEHVGGNVENFLVMMNARALSAGAVNTNYANTNGYTLPNHYTTAYDLALIARQALRN- 181

Query: 206 PQYYKYFSIRKFRY-----RNRI--ITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLR 257
            Q+ +  SI++        +NR   I N N+LL +    IDG+KTG T  +G  ++ S  
Sbjct: 182 KQFNRLISIKETTLNWEGNKNRTLEIRNTNRLLREGFPGIDGVKTGSTPRAGDCLIASAS 241

Query: 258 YKDDPIVAVVM 268
                ++AVV+
Sbjct: 242 RNGRRLIAVVL 252


>gi|319939695|ref|ZP_08014054.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus anginosus
           1_2_62CV]
 gi|319811284|gb|EFW07590.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus anginosus
           1_2_62CV]
          Length = 415

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 139/281 (49%), Gaps = 32/281 (11%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFE 91
           ++FL+  +++   E+ AK    +I +DV   ++  +++D  +P   AS+TK++T Y+++E
Sbjct: 15  LIFLAPTVLADNFEVGAK---HAIAVDVATGKIL-YEKDANQPVEIASITKLLTAYLVYE 70

Query: 92  YLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
            +   K  L T + +S    +     + S + L+ + Y T E+ +   +  SAN  + A 
Sbjct: 71  AIHQGKFTLQTSVDISDYPYQLTVNSDASNVPLEARKY-TVEELLETSLIASANSPAIAL 129

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------------DKNQITTA 191
            E ++GSEKKF  LM  K ++ G++ T   NASGL+                D+N++ +A
Sbjct: 130 AEKVAGSEKKFVDLMKAKLQQWGIKGTTIINASGLNNSVLGEEHIYPSSGKEDENKM-SA 188

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTGYTRN 247
            D AI+   L  ++P+  +        +    +T+ N +L  M      +DG+KTG +  
Sbjct: 189 HDVAIIARRLILDYPEVLEITQKATSNFAGMTLTSSNHMLENMPAFRAGVDGLKTGSSDK 248

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            G + V +++ +   ++ V++ +  + E +       + F+
Sbjct: 249 GGSSFVGTIQQRGMRLITVLLNVDHADEDENARFTATSRFM 289


>gi|15612584|ref|NP_240887.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus halodurans
           C-125]
 gi|10172633|dbj|BAB03740.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus halodurans
           C-125]
          Length = 444

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 137/280 (48%), Gaps = 33/280 (11%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYL 93
           +F   +  + A EL A+   S+I++D    ++   K  +   P AS+TKMM+ Y+I E +
Sbjct: 21  MFTPAMTANAAFELEAE---SAILVDAESGKILYGKNIDAVLPTASMTKMMSEYLILEAI 77

Query: 94  QSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
              ++  + ++P+S    + +     S + L++   +T ++   ++   SAN  + A  E
Sbjct: 78  NEGEISWDQEVPISDYVRELSLYVQLSNVPLRQDETYTVKELYESVAIYSANASTIALAE 137

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------------QITTARDQA 195
            I+GSE  F   M+ K +++G+++  + N+SGL++K+               + +AR  A
Sbjct: 138 LIAGSESAFVQRMNEKGEELGLEDFKFVNSSGLNNKDLLGNHPEGTDANAENVMSARATA 197

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYR----NRI-ITNHNKLLNKM------HNIDGIKTGY 244
            L   L K++P+  +  SI +  +R      I + N N +L  +        IDG+KTGY
Sbjct: 198 KLAYNLLKDYPEVLETASIPEKTFRAGEGEEIEMENWNWMLKGIRPQHDYEGIDGLKTGY 257

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           T  +G     +       +++VVM   T  +R ++  +L+
Sbjct: 258 TAEAGNCFTGTAERNGMRLISVVMRTETRDDRFKETAKLL 297


>gi|291561741|emb|CBL40540.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
           SS3/4]
          Length = 514

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 112/253 (44%), Gaps = 40/253 (15%)

Query: 55  SSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
             I++D+N   +  F+++  EP YPAS+TK++T  I+ E        L+  +  S TA  
Sbjct: 39  GGILMDINSGAVL-FEKNSHEPYYPASITKILTALIVIE-----NCGLDETVTFSNTAVN 92

Query: 113 Q---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
               N S L  +     +    + AL+ +SAN+V+ A  E  +GS   FA  M+ K  ++
Sbjct: 93  SLEPNSSILGARAGDTLSVRDCLYALLLQSANEVANALAEHCAGSIDAFAEKMNEKTAEL 152

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKN---------------------FPQY 208
           G  ++ + N SGL+D N   +A D A++      N                     +P  
Sbjct: 153 GCTDSHFANPSGLNDPNHYVSAYDMALIAKAAFNNPTFVEVDSTTYYDVPAGKLKQYPDG 212

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           ++Y++  +   RN  +     +        G KTGYT  +G  +VT        ++AVV+
Sbjct: 213 WRYYAHHRMLRRNDSLYYDGAI--------GGKTGYTLLAGNTLVTCAERDGMKLIAVVL 264

Query: 269 GMPTSQERDQKAL 281
               +   D KAL
Sbjct: 265 NGHQTHYSDTKAL 277


>gi|288556011|ref|YP_003427946.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudofirmus OF4]
 gi|288547171|gb|ADC51054.1| D-alanyl-D-alanine carboxypeptidase (serine) [Bacillus pseudofirmus
           OF4]
          Length = 382

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 125/253 (49%), Gaps = 16/253 (6%)

Query: 30  LMGKILFLSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMM 84
           ++G I FL    I+   E+ A+       ++I+++    ++   K D+     AS+TK+M
Sbjct: 7   VIGLIFFLLSFSIAPQIEVEARNFSVSAEAAIMMEQESGRILYAKNDQTSLRIASITKIM 66

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T  +  E   S K+    Q+ +S  A     S +YL+       E  +  L+ RS ND +
Sbjct: 67  TALLAIE---SGKMQ--EQVKISTNAEGTEGSSIYLRAGESMLLEDLVYGLMLRSGNDAA 121

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLRK 203
            A  E + GS + F  LM+ KA+++GM  T ++N  GL D ++  ++A D A+L     +
Sbjct: 122 VAIAEHVGGSLEGFVYLMNEKARELGMNQTQFQNPHGLDDHEDHYSSAYDMALLTRYAME 181

Query: 204 NFPQYYKYFSIRKFRYRN---RIITNHNKLLNKMHNID-GIKTGYTRNSGFNIVTSLRYK 259
           + P Y +  S +  R      R+  N N+LL +++    G KTG+T+ +   +V++    
Sbjct: 182 S-PLYQEISSAKTHRVDGDQIRVWHNKNRLLTELYEYSTGGKTGFTKRARRTLVSTASKD 240

Query: 260 DDPIVAVVMGMPT 272
           D  ++ V +  P+
Sbjct: 241 DLDLIVVTLNAPS 253


>gi|307706421|ref|ZP_07643231.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus mitis SK321]
 gi|307618208|gb|EFN97365.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus mitis SK321]
          Length = 413

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 133/269 (49%), Gaps = 34/269 (12%)

Query: 31  MGKILF--LSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQD--EPRYPASLTK 82
           M KI+   LS+ +I  AS + A+        +I ++ N  ++  +++D  +P   AS+TK
Sbjct: 1   MKKIILTLLSLSVIGSASTVAAQDFNIAAKHAIAVEANTGKIL-YEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S    K       S + ++ + Y T EQ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYKLTTNSEASNVPMEARNY-TVEQLLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------- 183
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+               
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSRKD 178

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDG 239
           D+N++ +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG
Sbjct: 179 DENKL-SAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDG 237

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +KTG T  +G + V +   K   ++ VV+
Sbjct: 238 LKTGTTDKAGESFVGTTVEKGMRVITVVL 266


>gi|317472783|ref|ZP_07932094.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
 gi|316899702|gb|EFV21705.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
          Length = 287

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 7/120 (5%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           YPAS+TK+MT  ++ E        L+  + + K     +P+   L+LK+    T E  + 
Sbjct: 101 YPASITKIMTALLVLE-----NCRLDDVVTIDKDITFDDPAAVSLHLKKGDKITVEALLN 155

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI  SAND + A G  ++GS+KKF  +M+ +A+++G  NT ++N +GLH KN  TTA D
Sbjct: 156 GLIVMSANDTAIALGRKVAGSDKKFVAMMNKRARELGATNTNFENPNGLHLKNHYTTAYD 215


>gi|225867885|ref|YP_002743833.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701161|emb|CAW98054.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus equi
           subsp. zooepidemicus]
          Length = 411

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 133/252 (52%), Gaps = 33/252 (13%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---A 111
           +I +++   ++   K+ + + P ASLTK++T+Y++ + +++ +L  ++Q+ +S+ A   A
Sbjct: 31  AIAVEMTTGKILYAKEAQQKAPIASLTKLLTVYLVLKEIKAGRLQWDSQVILSEYALQLA 90

Query: 112 TQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
           T     NP+     E+  +T ++ + + +  SAN  + A  E I+GSE  F  +M  + +
Sbjct: 91  TDPDISNPAF----EQRPYTIKELVESSLIISANSSAVALAEHIAGSEPTFVDMMKKQLE 146

Query: 168 KIGMQNTIYKNASGLH---------------DKNQITTARDQAILGILLRKNFPQYYKYF 212
             G+++    NASGL+               D+NQ+ TARD A++   L ++FP+     
Sbjct: 147 AWGIRDYRLVNASGLNNSMLKGHLYPGSQPDDENQM-TARDLALIAQQLLQDFPEVLTIS 205

Query: 213 SIRKFRYRNRIITNHNKLLNKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           S  + ++  + + + N LL         +DG+KTG T  +G  ++T+    +  I++V++
Sbjct: 206 SQAQLKWGEKALPSSNLLLAGREMGRAGVDGLKTGTTSQAGQTMITTAVQDNMRIISVIL 265

Query: 269 GMPTSQERDQKA 280
               S + D++A
Sbjct: 266 HADQS-DTDERA 276


>gi|34557129|ref|NP_906944.1| penicillin-binding protein [Wolinella succinogenes DSM 1740]
 gi|34482844|emb|CAE09844.1| PENICILLIN-BINDING PROTEIN [Wolinella succinogenes]
          Length = 283

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 109/221 (49%), Gaps = 13/221 (5%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT  +  E  +     +N  + ++       PSK   K    F     + + +
Sbjct: 58  PASLTKIMTAILAIESGK-----MNEVVTITPEMTLVEPSKAGFKVGEKFYLRDLVKSAL 112

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +SAND +T  G F+ GS + F  +M+ KAK +GM+ T + NA+G    + ++TA D  +
Sbjct: 113 IQSANDSATGIGIFVGGSSENFVKMMNKKAKALGMKETNFTNAAGFDIGDHLSTAHDLML 172

Query: 197 LG--ILLRKNFPQYYKY--FSIRKFRYRNRIITN--HNKLLNKMHNIDGIKTGYTRNSGF 250
           L    +  K+F +  K    +      +N+I T+  HNKLL       GIKTGYT  +G 
Sbjct: 173 LAEYAIKNKSFNEIVKMNKHTFSPINNKNKIYTSWTHNKLLRTHKYTIGIKTGYTSKAGP 232

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
            ++   +  +  ++ V++   + + R + A  +    +EK+
Sbjct: 233 CLIARAKKGEKDLLLVMLN--SKENRWKSAQAIFDEVIEKE 271


>gi|229196731|ref|ZP_04323474.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
 gi|228586806|gb|EEK44881.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
          Length = 338

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 124/229 (54%), Gaps = 17/229 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S+I+ID +  ++   K +E P   A+L+K+MT YI  E L    + L+  + +S     A
Sbjct: 37  SAILIDAHSGEVVYTKNEETPIQSATLSKLMTEYITLEQLNEGNIQLDEVVKISNEVFRA 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             +P ++  K+KT  T    + AL+    N  + A  E I+G+E KF  LM+ KAK + +
Sbjct: 97  ETSPIQVTSKDKT--TVRDLLHALLLTGNNRSALALAEHIAGNEDKFTQLMNEKAKHLKL 154

Query: 172 -QNTIYKNASGL-HDKNQI--TTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIIT 225
            Q++ + NA+G+ +D N++  TTA + A L   L  +FP        +  +F +++  + 
Sbjct: 155 SQSSPFLNATGMNNDTNKLSTTTAIEVAKLATQLVTDFPDVLNVTKLTSYQFTFKDTKVF 214

Query: 226 NHNKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N NK+   LN   K   +DG++T ++ N  ++ V++ +  D  +++V++
Sbjct: 215 NTNKMIYSLNKNIKHQGVDGLQTSFSTNGNYSFVSTAKRGDTRLISVIL 263


>gi|229543957|ref|ZP_04433016.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           coagulans 36D1]
 gi|229325096|gb|EEN90772.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           coagulans 36D1]
          Length = 373

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 122/241 (50%), Gaps = 18/241 (7%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFE 91
           ++F ++   + A++  +    S+I++D +  ++  +++D  EPR  AS+TK+MT  +  E
Sbjct: 13  LVFSALPPGAAAADTPSVQAKSAILMDQDTGRIL-YEKDAYEPRSIASITKIMTALVAIE 71

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              S K+  + +  VS  A     S LYLK    +  +  +  L+ RS ND +    E +
Sbjct: 72  ---SGKM--DKEAVVSNRAVRTEGSSLYLKPGDKWKMKDLVYGLMLRSGNDAANVIAENV 126

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--QITTARDQAILG--ILLRKNFPQ 207
            GS + F  +M+ KAK+IGM +T + N +GL D      +TA D A+L    +  K F +
Sbjct: 127 GGSIEGFVFMMNEKAKEIGMHDTHFANPNGLEDPGGRHYSTAYDMALLMKYAMQNKEFRK 186

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
                  + +R +NR++T       K     G KTGYT+ +   +VT+     + ++AV 
Sbjct: 187 ITGTKFYKGWRNKNRLLT------EKYRYCTGGKTGYTKAARRTLVTTATKGGENLIAVT 240

Query: 268 M 268
           +
Sbjct: 241 L 241


>gi|319767311|ref|YP_004132812.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
           sp. Y412MC52]
 gi|317112177|gb|ADU94669.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
           sp. Y412MC52]
          Length = 460

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 19/205 (9%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MT  +  E   S K+  +  + VS  A     S +YL++         +  L+ 
Sbjct: 138 ASITKIMTAILAIE---SGKM--DDTVTVSARAVRTEGSSIYLRQGEKIKLRDLVYGLML 192

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAI 196
           RS ND + A  E + GS + F  LM+ KA +IGM++T + N  GL D +N  +TA D A+
Sbjct: 193 RSGNDAAVAIAEHVGGSVEGFVFLMNQKAAEIGMRDTEFANPHGLDDAENHYSTAYDMAL 252

Query: 197 LGILLRKNFPQYYKYFSIRKFRYR---------NRIITNHNKLLNKMHN-IDGIKTGYTR 246
           L     KN  + ++  S  K  YR          R+  N NKLL  ++    G KTGYT+
Sbjct: 253 LMQYAMKN--KEFRRISGTKV-YRAPAPPGEDGARVWRNKNKLLTSLYEYCTGGKTGYTK 309

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMP 271
            +   +VT+       ++AV +  P
Sbjct: 310 RAHRTLVTTASKGGIDLIAVTLDAP 334


>gi|318080587|ref|ZP_07987919.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SA3_actF]
          Length = 409

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 107/210 (50%), Gaps = 11/210 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           PK     +DV+     G    +   P AS+ K+MT Y++      KK      I + + A
Sbjct: 56  PKSGQAAMDVDGLGSFGSSGAQKPVPIASVAKVMTAYLVLRDHPVKKGGDGASITMDQKA 115

Query: 111 ------ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
                 + QN S + ++     + ++ I A++  SAN+++     + +GSEK F   M+ 
Sbjct: 116 EDDAGLSAQNESTVDVRAGQKLSQKEAIEAIMLASANNIARQLARWDAGSEKDFVAKMNK 175

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-RI 223
            A ++GM+NT Y + SGL+ K  ++TA DQ  LG +  K+ P + +   +  +   N + 
Sbjct: 176 AADELGMKNTTYTDPSGLN-KTTVSTAEDQVKLGKVAMKD-PLFREVVRMPAYVDSNGKT 233

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            TN N+L+  M+N  GIKTG T  +G N++
Sbjct: 234 QTNWNRLV-PMNNTVGIKTGTTTAAGGNLL 262


>gi|322390982|ref|ZP_08064488.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis ATCC 903]
 gi|321142357|gb|EFX37829.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis ATCC 903]
          Length = 413

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 117/249 (46%), Gaps = 22/249 (8%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHL 100
           + +A EL   P  S+I ++ +  ++   K  E  R    L+ ++T Y+IFE +  KKL L
Sbjct: 22  VVLADELDL-PAQSAIAVEADTGKILYEKDSEKKRDVGGLSTLLTTYLIFEAIHEKKLSL 80

Query: 101 NTQIPVSKTAATQNP---SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
              I +S+ A   N    +     E   +T +Q + AL+  +++  + A  E + GSEK 
Sbjct: 81  KDPIKLSEKALALNDIEGAGTLPMEANQYTVDQLLTALLVGNSSTAALALAEKVGGSEKS 140

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLH------------DKNQITTARDQAILGILLRKNF 205
           F   M  K  + G+Q+    NA+GL+            D+NQ+ +A D A++   L ++F
Sbjct: 141 FVEKMKQKLSEWGIQSPHLINATGLNTQTINGDPDGKEDENQL-SAYDIAVIAKHLLQDF 199

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLNKMHN----IDGIKTGYTRNSGFNIVTSLRYKDD 261
           P+  KY S     + N  I N N +L  M N    +DG++   +   G     S      
Sbjct: 200 PEVTKYTSKPTALFSNTQIENPNLMLEGMPNYRSGVDGLRVSNSTKGGITFAASTTQNGI 259

Query: 262 PIVAVVMGM 270
            ++ VV+G+
Sbjct: 260 HMITVVLGV 268


>gi|257126624|ref|YP_003164738.1| serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia buccalis
           C-1013-b]
 gi|257050563|gb|ACV39747.1| Serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia buccalis
           C-1013-b]
          Length = 422

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 139/286 (48%), Gaps = 16/286 (5%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYIIF 90
           + FL++  +S A     +   + ++ DVN N +   K+D     R  AS+TK+MT  +  
Sbjct: 16  MAFLALSSLSFADGADYRDYKALLIGDVNGNII---KEDNSLAVRPLASVTKIMTSILTL 72

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           + ++S  +  + ++ VS  AA+  P  + L     +T    + A I +S+N+ + A  E+
Sbjct: 73  DKIKSGMISYDDKVTVSSKAASV-PYGIKLTAGKQYTVRDLLKATIIKSSNNAAYALAEY 131

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT-----ARDQAILGILLRKNF 205
           + G+   F   M+ KA+  G+++  Y +  GL      +      A+D   L  +  K++
Sbjct: 132 VGGNVPNFVQSMNEKARSYGLESLRYCSPHGLPPSYTGSCMDQGNAKDLYKLAQITVKDY 191

Query: 206 PQYYKYFSIRKFRY---RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
            +Y   FS  K  Y    N  +T+ N LL  +  +DGIKTGY   +G NIV +     + 
Sbjct: 192 SEYLN-FSKNKTDYVDNGNTKVTSTNSLLGNVLGVDGIKTGYHNAAGSNIVLTADRGGER 250

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
           ++A+++G   +++R+    + I  +      +  + +  +N++S +
Sbjct: 251 MIAIILGSNRAKDRNAIGTKEINDYYANGYARKNKNYNTNNVASAT 296


>gi|111115435|ref|YP_710053.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia afzelii PKo]
 gi|216263478|ref|ZP_03435473.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia afzelii ACA-1]
 gi|110890709|gb|ABH01877.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia afzelii PKo]
 gi|215980322|gb|EEC21143.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia afzelii ACA-1]
          Length = 401

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 109/222 (49%), Gaps = 27/222 (12%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGI 132
           PASLTK++T+Y      + + + L + +P+S +A    A  N S ++L++      E+ +
Sbjct: 65  PASLTKIVTIYTALIEAEKRNIKLKSIVPISDSASYYNAPPNSSLMFLEKGQIVNFEEIL 124

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             L   S ND S A  EF+ G    F  LM+  A  +G+ N  +   SG  ++N+I TA 
Sbjct: 125 KGLSVSSGNDASIAIAEFVVGDLNSFVNLMNINAFNLGLFNMHFVEPSGYSNENKI-TAL 183

Query: 193 DQAILGILLRKNFPQYYKYF----SIRKFRY---RNRIITNHNKLLN-KMHNI------- 237
           D A       K++ + +K+     S++ F Y   +N   T  +K LN K  N        
Sbjct: 184 DMAFFA----KSYVEKFKFMLNIHSLKYFVYPKSKNLGTTLSSKFLNLKQRNANLLIDDY 239

Query: 238 ---DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
              DG+KTGY + SG N+V +    +  ++AVV+G+     R
Sbjct: 240 PYSDGLKTGYIKESGLNLVATALKGERRLIAVVLGVEKGINR 281


>gi|52078501|ref|YP_077292.1| D-alanyl-D-alanine carboxypeptidase [Bacillus licheniformis ATCC
           14580]
 gi|52783865|ref|YP_089694.1| DacA [Bacillus licheniformis ATCC 14580]
 gi|319648529|ref|ZP_08002744.1| DacA protein [Bacillus sp. BT1B_CT2]
 gi|52001712|gb|AAU21654.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Bacillus licheniformis ATCC 14580]
 gi|52346367|gb|AAU39001.1| DacA [Bacillus licheniformis ATCC 14580]
 gi|317389377|gb|EFV70189.1| DacA protein [Bacillus sp. BT1B_CT2]
          Length = 441

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 123/243 (50%), Gaps = 30/243 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQ-IP---VSKT 109
           ++I+++ +  ++   K  + R P AS+ KMMT Y++ E +   K+  + +  P   V + 
Sbjct: 42  AAILVEASSGKILYSKNADQRLPVASMAKMMTEYLLLEAIHEGKVKWDQKYTPDDYVYEI 101

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L++   +T ++   A    SAN  + A  E ++GSE KF  LM+ KAK++
Sbjct: 102 SQDRSLSNVPLRKDGSYTVKELYQATAIYSANAAAIALSEIVAGSESKFVELMNKKAKEL 161

Query: 170 GMQNTIYKNASGLHDK---------------NQITTARDQAILGILLRKNFPQYYKYFSI 214
           GM++  + NA+GL +K               N++ +ARD A+L   L  ++P+     SI
Sbjct: 162 GMKDFKFVNATGLENKDLHGKHPSGTNANEENEV-SARDMALLADHLVSDYPEILDTASI 220

Query: 215 RKFRYRNRI-----ITNHN----KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            K ++R        + N N     L+ +   +DG+KTG T ++G     +       +++
Sbjct: 221 AKTKFRKGTDDEMDMPNWNFMLKGLVQQYEGVDGLKTGSTDSAGSCFTATAERNGMRVIS 280

Query: 266 VVM 268
           VV+
Sbjct: 281 VVL 283


>gi|328945504|gb|EGG39655.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK1087]
          Length = 451

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 122/260 (46%), Gaps = 37/260 (14%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +PK SS+VID +   +      DE R PAS++K+MTLY++FE ++  K+   T I  + T
Sbjct: 44  RPK-SSLVIDGSTGDVVWEDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVI--TAT 100

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILM 162
              Q  + +Y      +     +T  + I   I  S+N  +     ++S ++   F   M
Sbjct: 101 PQDQATANIYEISNNKIVAGVDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRM 160

Query: 163 SNKAKKIGMQNTIYKNASGL----------------HDKNQITTARDQAILGILLRKNFP 206
           + KA+++GM NT + NASG                 +  NQ TTARD AIL      + P
Sbjct: 161 NAKAQELGMTNTKWFNASGAAAVSFKGYYNPQNYDNYASNQ-TTARDLAILAYNFVNHHP 219

Query: 207 QYYKYFSIRKFR------YRNRIITNHNKLLNK---MHNIDGIKTGYTRNSGFNIVTSLR 257
           +   Y +  K        Y     T +  L      +  +DG+KTG + N  FN + +++
Sbjct: 220 EILNYTNKAKVTVKAGTPYEETFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIK 279

Query: 258 YKDDPIVAVVMGMPTSQERD 277
             D  ++AV+MG+    ++D
Sbjct: 280 RGDQRMIAVIMGVGDWSDQD 299


>gi|306832771|ref|ZP_07465907.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus bovis ATCC
           700338]
 gi|304425120|gb|EFM28250.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus bovis ATCC
           700338]
          Length = 416

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 112/239 (46%), Gaps = 25/239 (10%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTE 129
           P   AS+TK++T+Y++++ +   K+  +T++ +S  A    A  + S + ++ + Y T E
Sbjct: 57  PDGIASMTKILTVYLVYKAIDEGKISWDTKVSISDYAYNLTANSDASNVPMEAREY-TVE 115

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH------ 183
           Q + A +  SAN  + A  E I G+E KF  +M  + +  G+ +    NASGL+      
Sbjct: 116 QLVNAAMVASANSAAIALAEQIGGTESKFVDMMKAQLEVWGITDATIVNASGLNNSYLGD 175

Query: 184 ---------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
                    D+N + +ARD AI+   L   +P   K  S     +    +  +N +L  M
Sbjct: 176 NIYPGSSSTDENMM-SARDVAIIAQHLITEYPDILKITSQTTADFDGTTMNTYNYMLEGM 234

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
                 +DG+KTG T  +G + V +       I++VVM     ++ +    E     L+
Sbjct: 235 PYERSGVDGLKTGTTELAGASFVATSTENGMRIISVVMNADGWEDDEYARFEATNDLLD 293


>gi|229084569|ref|ZP_04216839.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44]
 gi|228698719|gb|EEL51434.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44]
          Length = 373

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 124/250 (49%), Gaps = 13/250 (5%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEY 92
           ++  SII I   ++++     ++I+++ +  + + G  + EP+  AS+TK+MT       
Sbjct: 12  VMCASIIPIHTYAQMNDVSARNAILLEEHSGRVLYGKSEHEPQKIASITKIMT-----AL 66

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           L ++   +   +P+S  A     S +YLK       E  +  L+ RS ND + A  E + 
Sbjct: 67  LAAESGRMREAVPISDKAVRVEGSAIYLKPGNKVPLEDLVYGLLLRSGNDAAQAIAENVG 126

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRKNFPQYYKY 211
           GS + F  +M+ KAK+IGM++T + N  GL  D    ++A D A+L      N   + K 
Sbjct: 127 GSIEGFVYMMNEKAKQIGMEDTHFSNPHGLDGDGTHYSSAYDMALLTRYAMGN-ETFRKI 185

Query: 212 FSIRKFRYR--NRIITNHNKLLNKMHNI-DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           F  + ++ +  +    N +KL+   +    G KTG+T+ +G  +VT+     D +  +V+
Sbjct: 186 FGTKTYQSKAWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA--SKDGLDLIVV 243

Query: 269 GMPTSQERDQ 278
            +  S + D 
Sbjct: 244 TLNASNDWDD 253


>gi|331091250|ref|ZP_08340091.1| hypothetical protein HMPREF9477_00734 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404697|gb|EGG84236.1| hypothetical protein HMPREF9477_00734 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 400

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 120/255 (47%), Gaps = 23/255 (9%)

Query: 34  ILFLSIIMISMASELHAKPKY----SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           I+ +  I  S+ ++   KPK     S++++D +  ++   K  D+ R  AS TK+MT  +
Sbjct: 11  IVLIVTIFFSITAKAVEKPKELYAQSAVLMDADSGRILFEKNGDQRRAMASTTKIMTCIL 70

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
             E     +  L  ++  S+ AA Q    L +++   F     + +L+  S ND +    
Sbjct: 71  ALE-----RGGLEGEVVASENAAKQPKVHLGVEKGETFRLRDLLYSLMLESHNDSAVMIA 125

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI----TTARDQAILGILLRKN 204
           E + GS +KFA +M+ KAK+IG  NT +   +GL  K+      TTA + A +       
Sbjct: 126 EKVGGSVEKFAKMMNEKAKEIGCINTYFITPNGLDAKDDTGKHSTTAGELAKIMSYCITQ 185

Query: 205 FPQYYKYFSI---RKFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
            P+  ++ +I   + +++      R  I  NHN  L  M      KTG+T  +G+  V +
Sbjct: 186 SPKKEEFLAITGQKSYQFTNMEKTRTYICHNHNAFLEMMEGAISGKTGFTGEAGYCYVGA 245

Query: 256 LRYKDDPIVAVVMGM 270
           LR  D   V  ++G 
Sbjct: 246 LRRNDRTFVVALLGC 260


>gi|239637166|ref|ZP_04678158.1| penicillin binding protein 4 [Staphylococcus warneri L37603]
 gi|239597298|gb|EEQ79803.1| penicillin binding protein 4 [Staphylococcus warneri L37603]
          Length = 412

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 102/198 (51%), Gaps = 23/198 (11%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGI 132
           PAS TK+MT+ ++++ ++S K+ +N ++ ++    K +   N +   LKE T  T  Q +
Sbjct: 69  PASTTKLMTMNLVYDDIKSGKIKMNDKVKITSRYEKMSELPNLTTFPLKEGTTVTINQLL 128

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK------- 185
                 S+N  +    E I GS  KF   M+ KAK +GM++T + N SG ++K       
Sbjct: 129 KQAALESSNAATLVLAEHIDGSSSKFTDRMNQKAKDLGMKDTTFTNPSGANNKILKPYEP 188

Query: 186 -----NQI--TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL----NKM 234
                + I  TTARD ++L   +    P   K   + K +  N+ + N N  L    + M
Sbjct: 189 KSYKDDTISHTTARDMSLLSNHILNAHPDVLKITKLSKDKQSNQELHNTNTSLPNEADGM 248

Query: 235 HNIDGIKTGYTRNSGFNI 252
            ++DG+KTG T ++G+N+
Sbjct: 249 KDVDGLKTG-TSDNGYNL 265


>gi|196248748|ref|ZP_03147448.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16]
 gi|196211624|gb|EDY06383.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16]
          Length = 354

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 112/225 (49%), Gaps = 18/225 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDE--PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S+I+I+ +  ++  F +D    R  AS+TK+MT  +  E   S KL  +  + VS  A  
Sbjct: 8   SAILIEQHSGRIL-FAKDAHTKRRIASITKIMTAILAIE---SGKL--DDTVTVSARAVR 61

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S +YL++         +  L+ RS ND + A  E + GS + F  LM+ KA +IGM+
Sbjct: 62  TEGSSIYLRQGEKMKLRDLVYGLMLRSGNDAAVAIAEHVGGSVEGFVFLMNEKAAEIGMR 121

Query: 173 NTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-------RNRII 224
           +T + N  GL D +N  +TA D A+L     KN  ++ +    + +R          R+ 
Sbjct: 122 DTEFANPHGLDDAENHYSTAYDMALLMQYAMKN-KEFRRISGTKVYRAPAPPGEDGARVW 180

Query: 225 TNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            N NKLL  ++    G KTGYT+ +   +VT+       +VAV +
Sbjct: 181 RNKNKLLTSLYEYCTGGKTGYTKRAHRTLVTTASKDGIDLVAVTL 225


>gi|153813187|ref|ZP_01965855.1| hypothetical protein RUMOBE_03603 [Ruminococcus obeum ATCC 29174]
 gi|149830718|gb|EDM85809.1| hypothetical protein RUMOBE_03603 [Ruminococcus obeum ATCC 29174]
          Length = 441

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 114/234 (48%), Gaps = 18/234 (7%)

Query: 50  AKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           A P  +S   ++ID +   +   K  DE RYPAS TK+MT+ +  E    K +   T+  
Sbjct: 48  AAPAVTSETAVLIDADTGAVLYDKGMDEYRYPASTTKIMTMLVAIENSSPKDIVTFTETG 107

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           +     T + S +  +     T +   +A   +SAN+V     E + G+E  F  +M+ K
Sbjct: 108 IRDV--TWDSSNINAQLGETMTMKDCWMAAYIKSANEVCAQIAETVGGTEANFVEMMNQK 165

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQA-ILGILLR-KNFPQYYKYFSIRKFRYRN-- 221
           AK++G  +T + NASGL D+N  ++A D A I+   LR K F Q  K  S  K    N  
Sbjct: 166 AKELGCTHTHFANASGLPDENHYSSAHDLAKIMRACLRNKRFRQVMK-CSNYKIPATNLS 224

Query: 222 --RIITNHNKLLNKMHNI---D--GIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             R++  H  L+ K  N+   D  G KTG++ ++   +VT+        +AV M
Sbjct: 225 EARVMHTHMPLMAKESNLYYADCIGGKTGFSTDAQHTLVTAAERNGRTYIAVTM 278


>gi|25010218|ref|NP_734613.1| hypothetical protein gbs0143 [Streptococcus agalactiae NEM316]
 gi|23094570|emb|CAD45788.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 411

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 130/248 (52%), Gaps = 30/248 (12%)

Query: 29  QLMGKILFLSII--MISMASE-LHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
           +++  IL LS I  M ++++E  +A  KY+ + +D++  ++   K  + P   ASLTK+M
Sbjct: 3   KIITSILLLSCIFFMPTISAESFNASAKYA-LAVDLDSGKILYEKDANRPAAIASLTKIM 61

Query: 85  TLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           T+Y++++ + +  L  NT++ +S    +     + S + L EK  +T +Q + A +  SA
Sbjct: 62  TVYMVYKEIDNGNLKWNTKVNISDYPYQLTRESDASNVPL-EKRRYTVKQLVDAAMISSA 120

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL---------------HDK 185
           N  + A  E ISG+E KF   M+ + +K G+ ++   NASGL               +D+
Sbjct: 121 NSAAIALAEHISGTESKFVDKMTAQLEKWGIHDSHLVNASGLNNSMLGNHIYPKSSQNDE 180

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIK 241
           N++ +ARD AI+   L   +P   K  S    ++   I+ ++N +L  M      I G+K
Sbjct: 181 NKM-SARDIAIVAYHLVNEYPSILKITSKSVAKFDKDIMHSYNYMLPDMPVFRPGITGLK 239

Query: 242 TGYTRNSG 249
           TG T  +G
Sbjct: 240 TGTTELAG 247


>gi|225871200|ref|YP_002747147.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp. equi
           4047]
 gi|225700604|emb|CAW95134.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus equi
           subsp. equi 4047]
          Length = 411

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 133/252 (52%), Gaps = 33/252 (13%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---A 111
           +I +++   ++   K+ + + P ASLTK++T+Y++ + +++ +L  ++Q+ +S+ A   A
Sbjct: 31  AIAVEMTTGKILYAKEAQQKAPIASLTKLLTVYLVLKEIKAGRLQWDSQVTLSEYALQLA 90

Query: 112 TQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
           T     NP+     E+  +T ++ + + +  SAN  + A  E I+GSE  F  +M  + +
Sbjct: 91  TDPDISNPAF----EQRPYTIKELVESSLIISANSSAVALAEHIAGSEPTFVDMMKKQLE 146

Query: 168 KIGMQNTIYKNASGLH---------------DKNQITTARDQAILGILLRKNFPQYYKYF 212
             G+++ +  NASGL+               D+NQ+ TARD A++   L ++FP+     
Sbjct: 147 AWGIRDYLLVNASGLNNSMLKGHLYPGSQPDDENQM-TARDLALIAQQLIQDFPELLTIS 205

Query: 213 SIRKFRYRNRIITNHNKLLNKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           S  + ++  + + + N LL         +DG+KTG T  +G  ++ +    +  +++V++
Sbjct: 206 SQPQLKWGEKALPSSNLLLAGREMGRAGVDGLKTGTTSQAGQTMIATAVQDNMRVISVIL 265

Query: 269 GMPTSQERDQKA 280
               S + D++A
Sbjct: 266 HADQS-DTDERA 276


>gi|269123185|ref|YP_003305762.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Streptobacillus moniliformis DSM 12112]
 gi|268314511|gb|ACZ00885.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Streptobacillus moniliformis DSM 12112]
          Length = 281

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 125/244 (51%), Gaps = 18/244 (7%)

Query: 54  YSSIVI-DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           Y S+ I D   N+   + +   R  ASLTK+MT  IIF+ +Q  K  LNT++ VSK  A+
Sbjct: 38  YKSMYIGDDENNKYYSYNETSTRPLASLTKLMTALIIFDDIQEGKYELNTEVVVSK-EAS 96

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGM 171
           + P  + +KE   +T E+ +  L+  S+N  +     F S G+  +F   M+ KAK +G+
Sbjct: 97  KVPYGVVIKENRIYTIEELLHLLLINSSNSSAYQLALFSSFGNVDEFVDKMNKKAKSLGL 156

Query: 172 QNTIYKNASGLH--DKNQ---ITTARDQAILGILLRKNFPQYYKYFSI-RKFRYR--NRI 223
           ++  ++   GL   D N+   I  ARD  +L +    N     K   I +K+ Y   + I
Sbjct: 157 RSLRFRTPHGLPPVDTNKAMDIGNARDIYLLAL----NALNNEKLIEISKKYSYETSDGI 212

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ---KA 280
                  L ++  + G+KTG+ R +G+NIV  +   D  I+ V++G  T   R++   K 
Sbjct: 213 KIKSTNTLVQLDEVLGLKTGFHRRAGYNIVYLIDNGDKKIIQVILGANTISSREKLGLKT 272

Query: 281 LELI 284
           LEL+
Sbjct: 273 LELM 276


>gi|332361675|gb|EGJ39479.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK1056]
          Length = 455

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 122/260 (46%), Gaps = 37/260 (14%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +PK SS+VID +   +      DE R PAS++K+MTLY++FE ++  K+   T I  + T
Sbjct: 48  RPK-SSLVIDGSTGDVVWEDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVI--TAT 104

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK-FAILM 162
              Q  + +Y      +     +T  + I   I  S+N  +     ++S ++   F   M
Sbjct: 105 PQDQATANIYEISNNKIVAGVDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRM 164

Query: 163 SNKAKKIGMQNTIYKNASGL----------------HDKNQITTARDQAILGILLRKNFP 206
           + KA+++GM NT + NASG                 +  NQ TTARD AIL      + P
Sbjct: 165 NAKAQELGMTNTKWFNASGAAAVSFKGYYNPQNYDNYASNQ-TTARDLAILAYNFVNHHP 223

Query: 207 QYYKYFSIRKFR------YRNRIITNHNKLLNK---MHNIDGIKTGYTRNSGFNIVTSLR 257
           +   Y +  K        Y     T +  L      +  +DG+KTG + N  FN + +++
Sbjct: 224 EILNYTNKAKVTVKAGTPYEETFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIK 283

Query: 258 YKDDPIVAVVMGMPTSQERD 277
             D  ++AV+MG+    ++D
Sbjct: 284 RGDQRMIAVIMGVGDWSDQD 303


>gi|297529545|ref|YP_003670820.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
           sp. C56-T3]
 gi|297252797|gb|ADI26243.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
           sp. C56-T3]
          Length = 460

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 19/205 (9%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MT  +  E   S K+  +  + VS  A     S +YL++         +  L+ 
Sbjct: 138 ASITKIMTAILAIE---SGKM--DDTVTVSARAVRTEGSSIYLRQGEKIKLRDLVYGLML 192

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAI 196
           RS ND + A  E + GS + F  LM+ KA +IGM++T + N  GL D +N  +TA D A+
Sbjct: 193 RSGNDAAVAIAEHVGGSVEGFVFLMNQKAAEIGMRDTEFANPHGLDDAENHYSTAYDMAM 252

Query: 197 LGILLRKNFPQYYKYFSIRKFRYR---------NRIITNHNKLLNKMHN-IDGIKTGYTR 246
           L     KN  + ++  S  K  YR          R+  N NKLL  ++    G KTGYT+
Sbjct: 253 LMQYAMKN--KEFRRISGTKV-YRAPAPPGEDGARVWRNKNKLLTSLYEYCTGGKTGYTK 309

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMP 271
            +   +VT+       ++AV +  P
Sbjct: 310 RAHRTLVTTASKGGVDLIAVTLDAP 334


>gi|325697148|gb|EGD39035.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK160]
          Length = 455

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 122/260 (46%), Gaps = 37/260 (14%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +PK SS+VID +   +      DE R PAS++K+MTLY++FE ++  K+   T I  + T
Sbjct: 48  RPK-SSLVIDGSTGDVVWEDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVI--TAT 104

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK-FAILM 162
              Q  + +Y      +     +T  + I   I  S+N  +     ++S ++   F   M
Sbjct: 105 PQDQATANIYEISNNKIVAGVDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRM 164

Query: 163 SNKAKKIGMQNTIYKNASGL----------------HDKNQITTARDQAILGILLRKNFP 206
           + KA+++GM NT + NASG                 +  NQ TTARD AIL      + P
Sbjct: 165 NAKAQELGMTNTKWFNASGAAAVSFKGYYNPQNYDNYASNQ-TTARDLAILAYNFVNHHP 223

Query: 207 QYYKYFSIRKFR------YRNRIITNHNKLLNK---MHNIDGIKTGYTRNSGFNIVTSLR 257
           +   Y +  K        Y     T +  L      +  +DG+KTG + N  FN + +++
Sbjct: 224 EILNYTNKAKVTVKAGTPYEETFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIK 283

Query: 258 YKDDPIVAVVMGMPTSQERD 277
             D  ++AV+MG+    ++D
Sbjct: 284 RGDQRMIAVIMGVGDWSDQD 303


>gi|228477469|ref|ZP_04062105.1| D-Alanyl-D-Alanine carboxypeptidase [Streptococcus salivarius
           SK126]
 gi|228250904|gb|EEK10092.1| D-Alanyl-D-Alanine carboxypeptidase [Streptococcus salivarius
           SK126]
          Length = 448

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 132/275 (48%), Gaps = 38/275 (13%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A+E + +PK S+++ID N   +   +  DE R PAS++K MTLY++FE +   ++  +T 
Sbjct: 38  ATEAY-RPK-STLLIDGNTGDVLWEENADEVRDPASMSKAMTLYLVFEAMSKGEISEDTV 95

Query: 104 IPVSKTAATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-K 156
           I  + T   Q  + +Y      +     +T  + I      S+N  +     +++ ++  
Sbjct: 96  I--TATPTDQAIADIYEISNNKIVAGVDYTVSELITMTAVPSSNVTTVMLANYLTNNDPD 153

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGL-------------HDKNQI--TTARDQAILGILL 201
           K+  +M+ K+K++GM NT + NASG              +D NQ   TTARD AI+    
Sbjct: 154 KWLDMMNEKSKELGMTNTKWFNASGAVAVAFKGYYSPQRYDNNQTNQTTARDLAIMTYNF 213

Query: 202 RKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNI 252
            K +P   KY S     ++K          +N  +      +  +DG+KTG +    FN 
Sbjct: 214 IKKYPDILKYTSKPVVTVKKGTPYEETFETYNYSIPGAKYGIDGVDGLKTGSSPEGAFNY 273

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           + +++  D  ++AV+MG  +    DQ   E+  +F
Sbjct: 274 IDTIKRGDQRMIAVIMG--SGDWSDQTGEEIRHTF 306


>gi|126651542|ref|ZP_01723745.1| hypothetical protein BB14905_13055 [Bacillus sp. B14905]
 gi|126591491|gb|EAZ85597.1| hypothetical protein BB14905_13055 [Bacillus sp. B14905]
          Length = 278

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 94/194 (48%), Gaps = 15/194 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGIL 133
           YPASLTK+MT  +  E   +  L + T +     A    QN S        + T E  + 
Sbjct: 59  YPASLTKIMTAIVAIE--MTDDLQMQTIVKPQTIAKYTAQNASMAGFHAGDFVTIEDLLY 116

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
             +  S  D +    E I+GSE +F   M+ KA+++GM  T + N SGLHD+  +++ +D
Sbjct: 117 GTLLASGADATATLAEAIAGSEDEFVTYMNKKAQELGMDATHFINTSGLHDEAHVSSLQD 176

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITN---HNKLLNKMHNIDGI----KTGYTR 246
            + L     +N P +Y+ F+ +   Y   + T     N L  +M ++DG     KTGYT 
Sbjct: 177 MSKLLRYALEN-PTFYQIFTSKA--YTTHVPTELLIANSLFTRMPSMDGTILGGKTGYTP 233

Query: 247 NSGFNIVTSLRYKD 260
            +G   + SL  KD
Sbjct: 234 EAGL-CLASLMEKD 246


>gi|323352662|ref|ZP_08087632.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           VMC66]
 gi|322121698|gb|EFX93444.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           VMC66]
 gi|324995361|gb|EGC27273.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK678]
 gi|327468942|gb|EGF14414.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK330]
          Length = 455

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 122/260 (46%), Gaps = 37/260 (14%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +PK SS+VID +   +      DE R PAS++K+MTLY++FE ++  K+   T I  + T
Sbjct: 48  RPK-SSLVIDGSTGDVVWEDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVI--TAT 104

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK-FAILM 162
              Q  + +Y      +     +T  + I   I  S+N  +     ++S ++   F   M
Sbjct: 105 PQDQATANIYEISNNKIVAGVDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRM 164

Query: 163 SNKAKKIGMQNTIYKNASGL----------------HDKNQITTARDQAILGILLRKNFP 206
           + KA+++GM NT + NASG                 +  NQ TTARD AIL      + P
Sbjct: 165 NAKAQELGMTNTKWFNASGAAAVSFKGYYNPQNYDNYASNQ-TTARDLAILAYNFVNHHP 223

Query: 207 QYYKYFSIRKFR------YRNRIITNHNKLLNK---MHNIDGIKTGYTRNSGFNIVTSLR 257
           +   Y +  K        Y     T +  L      +  +DG+KTG + N  FN + +++
Sbjct: 224 EILNYTNKAKVTVKAGTPYEETFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIK 283

Query: 258 YKDDPIVAVVMGMPTSQERD 277
             D  ++AV+MG+    ++D
Sbjct: 284 RGDQRMIAVIMGVGDWSDQD 303


>gi|310642604|ref|YP_003947362.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Paenibacillus
           polymyxa SC2]
 gi|309247555|gb|ADO57122.1| Peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           polymyxa SC2]
          Length = 420

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 98/197 (49%), Gaps = 12/197 (6%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT  +  E+ +     L  ++ VS TA  +  S L+L+     T E  +  L+ 
Sbjct: 87  ASLTKIMTAIVAIEHGR-----LQDRVKVSSTAYAKEGSSLFLQMGEQMTLENMLYGLML 141

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           RS ND ++A  E + G+E+ F  LM++KA ++G+ +T + N  GL      ++A D A L
Sbjct: 142 RSGNDAASAIAEHVGGTEEGFVHLMNDKAVQLGLNHTHFANPHGLDADGHYSSANDMARL 201

Query: 198 GILLRKNFPQYYKYF--SIRKFRYRNRIIT----NHNKLLNKMHNIDGIKTGYTRNSGFN 251
                 N P + +     ++K    N        N NK+L      DG+KTG+T+ +   
Sbjct: 202 TAYALHN-PTFARIVKTELKKAPNPNDSWDYSWHNKNKMLRLYEGADGVKTGFTKKAFRC 260

Query: 252 IVTSLRYKDDPIVAVVM 268
           +V+S   +   + AV +
Sbjct: 261 LVSSATREGRQLAAVTL 277


>gi|229091549|ref|ZP_04222757.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
 gi|228691773|gb|EEL45522.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
          Length = 338

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 123/229 (53%), Gaps = 17/229 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S+I+ID N  ++   K +E P   A+L+K+MT YI  E L    + L+  + +S     A
Sbjct: 37  SAILIDANSGEVVYKKNEETPIQSATLSKLMTEYITLEQLNEGTIQLDEVVKISNEVFRA 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             +P ++  K+KT  T    +  L+    N  + A  E I+G+E KF  LM+ KAK + +
Sbjct: 97  ETSPIQVTSKDKT--TVRDLLHTLLLTGNNRSALALAEHIAGNEDKFTQLMNEKAKHLKL 154

Query: 172 -QNTIYKNASGL-HDKNQI--TTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIIT 225
            Q++ + NA+G+ +D N++  TTA + A L   L  +FP       +   +F +++  + 
Sbjct: 155 SQSSPFLNATGMNNDTNKLSTTTAIEVAKLATQLVTDFPDVLNVTKLTSYQFTFKDTKVF 214

Query: 226 NHNKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N NK+   LN   K   +DG++T ++ N  ++ V++ +  D  +++V++
Sbjct: 215 NTNKMIYSLNKNIKHQGVDGLQTSFSTNGNYSFVSTAKQGDTRLISVIL 263


>gi|313683330|ref|YP_004061068.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Sulfuricurvum
           kujiense DSM 16994]
 gi|313156190|gb|ADR34868.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sulfuricurvum
           kujiense DSM 16994]
          Length = 275

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 93/202 (46%), Gaps = 20/202 (9%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT  +  E  +  +L     + +SK      P+K   KE   F     I A +
Sbjct: 56  PASLTKIMTATLAIEQGELTRL-----VVISKEMLQVEPTKAGYKEGEIFLLGDLINAAM 110

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD--- 193
            +S ND + A    I GS + F  +M+ KA  IGM NT++ N  G    N  +T +D   
Sbjct: 111 IKSDNDAAMAVAIAIGGSIENFNKMMNAKAASIGMVNTVFTNPCGFDIGNHHSTPQDLLT 170

Query: 194 -------QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
                    +   + R N   YY   + RKF     +   HN+LLNK     G+KTGYT 
Sbjct: 171 LAEYAIKNPVFNDITRLNQHTYYSLNTARKF-----VANTHNQLLNKYEYAVGVKTGYTS 225

Query: 247 NSGFNIVTSLRYKDDPIVAVVM 268
            +G  ++   + +D   + V++
Sbjct: 226 KAGPCLIARAKKEDRDCLIVML 247


>gi|299538369|ref|ZP_07051652.1| penicillin-binding protein 5* precursor [Lysinibacillus fusiformis
           ZC1]
 gi|298725956|gb|EFI66548.1| penicillin-binding protein 5* precursor [Lysinibacillus fusiformis
           ZC1]
          Length = 356

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 119/260 (45%), Gaps = 34/260 (13%)

Query: 35  LFLSIIMISMASELH-AKPKYSSIVIDVNKNQ-MTGFKQDEPRYP-ASLTKMMTLYIIFE 91
           LF+ I+++ M  +   A+      V+D    + + G   DE R P ASLTK+ T  +  E
Sbjct: 9   LFMIIVLMVMLPQTSLARGGSGYAVLDGETGRILIGSNSDE-RLPIASLTKIWTALVAIE 67

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
                   L  ++ +S  AA    S +YL+     T E  +  L+ RS ND +TA  E +
Sbjct: 68  -----NSDLQEEVVISPKAAMAEGSSIYLQAGEKVTVETLLYGLMLRSGNDAATALAEHV 122

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA-ILGILLR-KNFPQYY 209
            GS + F  LM+ +A   G+ NT++ N SGLH    +++ARD A +L + L+ K F +  
Sbjct: 123 GGSVEGFVKLMNERAVIAGLTNTVFMNPSGLHHDEHLSSARDTAEMLRLALQNKTFEKIA 182

Query: 210 KYFSIRKFRYRNRIITNHNKLLNK----MHNID------------------GIKTGYTRN 247
                R       +  N ++LL +      +ID                    KTG+T+ 
Sbjct: 183 STVLYRANTVNGMLWENKHRLLREGSGMAADIDDETEQPVSSLKSATGTAFAGKTGFTKV 242

Query: 248 SGFNIVTSLRYKDDPIVAVV 267
           +G  + T+ + KD  I  VV
Sbjct: 243 AGRTLATAFQ-KDGQICIVV 261


>gi|324993328|gb|EGC25248.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK405]
 gi|332362608|gb|EGJ40406.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK49]
          Length = 455

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 122/260 (46%), Gaps = 37/260 (14%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +PK SS+VID +   +      DE R PAS++K+MTLY++FE ++  K+   T I  + T
Sbjct: 48  RPK-SSLVIDGSTGDVVWEDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVI--TAT 104

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK-FAILM 162
              Q  + +Y      +     +T  + I   I  S+N  +     ++S ++   F   M
Sbjct: 105 PQDQATANIYEISNNKIVAGVDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRM 164

Query: 163 SNKAKKIGMQNTIYKNASGL----------------HDKNQITTARDQAILGILLRKNFP 206
           + KA+++GM NT + NASG                 +  NQ TTARD AIL      + P
Sbjct: 165 NAKAQELGMTNTKWFNASGAAAVSFKGYYNPQNYDNYASNQ-TTARDLAILAYNFVNHHP 223

Query: 207 QYYKYFSIRKFR------YRNRIITNHNKLLNK---MHNIDGIKTGYTRNSGFNIVTSLR 257
           +   Y +  K        Y     T +  L      +  +DG+KTG + N  FN + +++
Sbjct: 224 EILNYTNKAKVTVKAGTPYEETFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIK 283

Query: 258 YKDDPIVAVVMGMPTSQERD 277
             D  ++AV+MG+    ++D
Sbjct: 284 RGDQRMIAVIMGVGDWSDQD 303


>gi|260219749|emb|CBA26593.1| hypothetical protein Csp_H39370 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 364

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 76/129 (58%), Gaps = 4/129 (3%)

Query: 43  SMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           ++A++    P+ ++   +++DV  NQ+   K  D P  PASLTK+MT Y++F+ L+SKK+
Sbjct: 4   AVAAQAPRPPEVAARAYLLLDVTSNQILASKDMDMPVEPASLTKLMTAYLVFDALRSKKI 63

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            L    PVS+ A     S++++  K     E  I  +I +S ND + A  E + GS ++F
Sbjct: 64  DLKQTFPVSERAWKMPGSRMFIDPKMQVPVEDLIKGMIVQSGNDATMALAEGVGGSLERF 123

Query: 159 AILMSNKAK 167
             +M+++AK
Sbjct: 124 VQMMNDQAK 132


>gi|295110612|emb|CBL24565.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162]
          Length = 417

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 100/211 (47%), Gaps = 19/211 (9%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTT 128
           D+  YP +  K+MT  +  E  Q     L+ Q+ ++ T     T   + +  +    FT 
Sbjct: 76  DQVLYPGATVKVMTTLLALENTQ-----LSDQVTMTATGVSGVTDGGANISAQIDEVFTV 130

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           EQ + A++  SANDV+    E I GS   F  +M+ +A ++G  NT++ N +GL D+NQ 
Sbjct: 131 EQCLYAIMLASANDVALQLAEHIGGSVDGFVQMMNARAPELGCTNTVFTNPTGLPDENQH 190

Query: 189 TTARDQAIL--GILLRKNFPQYYKYFS----IRKFRYRNRIITNHNKLLNKMHN-----I 237
           TTA D A++       ++F       S           +R++TN+  +L   +       
Sbjct: 191 TTAHDMALIMKAAADNESFQTIASTTSYTIPATNVSGGDRVLTNNFSMLTNTNAAYYQYC 250

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            G + GYT  SG  +V S +     ++AVV+
Sbjct: 251 TGGREGYTEASGSTLVCSAQKNGITLIAVVL 281


>gi|42781590|ref|NP_978837.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987]
 gi|42737513|gb|AAS41445.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987]
          Length = 434

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 133/268 (49%), Gaps = 35/268 (13%)

Query: 35  LFLSIIMISMASELHAKP-----KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           LF SI++ S ++     P       S+I+++ N  ++   K  DE    AS+TKMM+ Y+
Sbjct: 15  LFCSIVVTSGSASAETVPVLDVEAGSAILVEANSGKILYEKNADESLAIASMTKMMSEYL 74

Query: 89  IFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           + E ++  KL  + ++ +S+ A T    ++ S + L+    +T ++   A+   SAN  +
Sbjct: 75  VHEAVEKGKLKWDQKVKISEYAYTISQDRSLSNVPLENSGSYTVKELYEAMAIYSANGAT 134

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL---------------HDKNQIT 189
            A  E I+G E  F  +M++K+K+ GM+N  + N++GL                +KN++ 
Sbjct: 135 IALVEEIAGKEADFVKMMNDKSKEFGMKNYKFVNSTGLTNYDLKGHHPEGTTPDEKNKM- 193

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----IITNHNKLLNKM----HNIDGI 240
           +ARD AIL   L ++FP+      I K  ++        + N N +L  +      +DG+
Sbjct: 194 SARDCAILAQRLVQDFPKMLDTAKIPKKTFQKGGKYPIDMVNFNMMLKGLIKQYEGVDGL 253

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G     ++      +++VV+
Sbjct: 254 KTGTTPEAGDCFTGTVERNGMRLISVVI 281


>gi|28211195|ref|NP_782139.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88]
 gi|28203635|gb|AAO36076.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88]
          Length = 374

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 126/259 (48%), Gaps = 16/259 (6%)

Query: 57  IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           I +D N   +   +  E   P AS TK++T  +  +Y       L+  + +S  A++   
Sbjct: 45  IALDANSKVVLAGRNSEVIMPMASTTKILTALVTLKYGD-----LDKMVEISPKASSIRG 99

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S    K+    + ++ +  L+ RS ND + A  E ++GSE++F  LM+  A  +G+ ++ 
Sbjct: 100 SVAGYKKGEEISLKELLFGLMLRSGNDAAIAIAEGVAGSEEEFVRLMNEYAASLGLIDSH 159

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS---IRKFRYR-NRIITNHNKLL 231
           + +  GL      +T  D AIL    +K+ P +++  S   I K +Y  +R   N NK+L
Sbjct: 160 FCSPHGLDSAEHYSTVYDLAILTAESKKH-PLFHEIVSTKDITKDKYSFSRDYHNINKIL 218

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
            ++ N  G+KTGYT  +G  +V+S+      ++ VV+  P   +   K    +     KK
Sbjct: 219 WQLPNATGVKTGYTGGAGKCLVSSVDISGREVIIVVLDCPGRWKETTKVNNYV-----KK 273

Query: 292 TLKHQQTHRKDNLSSTSLK 310
             ++++ H K  + + + K
Sbjct: 274 NYEYKKLHSKGEVVAKAPK 292


>gi|226311997|ref|YP_002771891.1| peptidase S11 family protein precursor [Brevibacillus brevis NBRC
           100599]
 gi|226094945|dbj|BAH43387.1| peptidase S11 family protein precursor [Brevibacillus brevis NBRC
           100599]
          Length = 389

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 85/176 (48%), Gaps = 13/176 (7%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK MT  +  E  +     L+ Q+ V   A     S +YLK     T E+ +  L+ 
Sbjct: 64  ASLTKTMTAIVAIEMGK-----LDAQVTVPPQAVGVEGSSIYLKNGEKLTLEELLYGLML 118

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ-ITTARDQAI 196
           RS ND +      I GS   F  LM+ KA  IGM+ T + N  GL D NQ  +T  D A 
Sbjct: 119 RSGNDAAVTIAMHIGGSVPGFTYLMNEKAAMIGMEYTNFTNPHGLDDSNQHYSTPEDMAK 178

Query: 197 LGILLRKNFPQYYKYFS--IRKFRYR----NRIITNHNKLLNKMHNIDGIKTGYTR 246
           L      N P + +  S  ++   +     +R + N NK+L+  +  DG+KTGYT+
Sbjct: 179 LSAYALHN-PVFRQIVSTKVKDISWEGEQWDRRLLNKNKMLHLYNGADGVKTGYTK 233


>gi|229024081|ref|ZP_04180554.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272]
 gi|228737223|gb|EEL87745.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272]
          Length = 338

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 130/254 (51%), Gaps = 27/254 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDE--PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S+I+ID N  ++  +K++E  P   A+L+K+MT YI+ E L   K+ L+  + +      
Sbjct: 37  SAILIDTNSGEIV-YKKNERTPIQSATLSKLMTEYIVMEQLHDGKIQLDESVKIRNEVFQ 95

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM- 171
              S + +  K   T    + AL+    N  + A  E I+G+E  F  LM+ KAK++ + 
Sbjct: 96  TETSPIQVTSKDNTTVRDLLHALLLTGNNRSALALAEHIAGNEDNFTSLMNEKAKQLKLS 155

Query: 172 QNTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYY---KYFSIRKFRYRNRIIT 225
           Q + + N++G++   ++  ITTA D A +   L K++P      K  S R F +++  + 
Sbjct: 156 QQSPFLNSTGINSEKNRQSITTAIDAAEIAAQLIKDYPDVLNITKQTSYR-FTFKDVQVF 214

Query: 226 NHNKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           N NK+   LN   K+ ++DG+++  + N  ++ V++    D   ++VV+           
Sbjct: 215 NTNKMIYSLNKNIKLKDVDGLQSSLSTNGNYSFVSTANQGDTRFISVVLD---------- 264

Query: 280 ALELITSFLEKKTL 293
           A E  T+F+E K L
Sbjct: 265 ANEENTAFVETKKL 278


>gi|315150905|gb|EFT94921.1| putative beta-lactamase [Enterococcus faecalis TX0012]
          Length = 493

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 132/277 (47%), Gaps = 41/277 (14%)

Query: 37  LSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
           +++I   M + L A   PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE +
Sbjct: 42  ITVIAKKMGTTLKADGIPK-AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAM 100

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AF 147
           +  K  ++T   V+ T    + SK+Y       T       + +L +I   +++V+T   
Sbjct: 101 EQGKFTMDTT--VTATQKDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLML 158

Query: 148 GEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLH---------------DKNQITTA 191
              ISG++   F  LM+ KA ++GM NT Y N SG                 + + ++TA
Sbjct: 159 ANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTA 218

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGI 240
           RD A L     KN+P+  +     K   +  + T + +     +            +DG+
Sbjct: 219 RDLASLTYHFLKNYPEILEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGL 276

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           KTG +   GFN + +++  D  ++ V++G+   Q +D
Sbjct: 277 KTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQD 313


>gi|225867884|ref|YP_002743832.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701160|emb|CAW98052.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus equi
           subsp. zooepidemicus]
          Length = 393

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 35/252 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           KPK +SIV+D   +++      D PR PAS++KM TLYI+FE L   K+ L+T I  ++T
Sbjct: 42  KPK-ASIVVDAKTSEILWQDNIDMPRDPASMSKMFTLYILFEELAKGKITLDTTITATET 100

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
              Q  SK+Y      +     +     I+  +  S+N  +     ++S ++    I   
Sbjct: 101 --DQAISKIYEISNNNIVAGVAYPIRDLIIMTVVPSSNAATVMIANYLSNNDASAFIDRI 158

Query: 164 NK-AKKIGMQNTIYKNASGL-------------HD--KNQITTARDQAILGILLRKNFPQ 207
           NK AK++GM NT + NASG              +D   + ITTARD A L      N+P 
Sbjct: 159 NKTAKELGMTNTHFSNASGAIAQAFQGYYVPEKYDLTASNITTARDFATLIYYFLNNYPS 218

Query: 208 YYKYFSIRKFR------YRNRIITNHNKLLN---KMHNIDGIKTGYTRNSGFNIVTSLRY 258
              + +    R      Y     + ++ L +    +  +DG+KTG + ++ FN V + + 
Sbjct: 219 ILDFTNQTVVRTMVGTPYEEEFHSYNHSLPDGKFGIEGVDGMKTGSSPSAAFNAVVTAKR 278

Query: 259 KDDPIVAVVMGM 270
            +  ++ VV+G+
Sbjct: 279 GNTRLITVVLGV 290


>gi|296877427|ref|ZP_06901464.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis ATCC 15912]
 gi|296431588|gb|EFH17398.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis ATCC 15912]
          Length = 413

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 114/239 (47%), Gaps = 21/239 (8%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  S+I ++ +  ++   K  D+ R    L+ ++T Y+IFE +  KKL L   I +S+ A
Sbjct: 31  PVQSAIAVEADTGKILYEKDSDKKREVGGLSTLLTTYLIFEAIHDKKLSLKDPIKLSEEA 90

Query: 111 ATQNPSK---LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
              N  K       E   +T +Q ++AL+  +++  + A  E + GSEK F   M  K  
Sbjct: 91  LALNDIKGAGTLPIEANQYTVDQLLIALLVGNSSTAAFALAEKVGGSEKSFVEKMKQKLA 150

Query: 168 KIGMQNTIYKNASGLH------------DKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           + G+Q+    NA+GL+            D+NQ+ +A D A++   L ++FP+  KY S  
Sbjct: 151 EWGIQSPHLINATGLNTQTISGDPDGKEDENQL-SAYDIAVIAKHLLQDFPEVTKYTSKP 209

Query: 216 KFRYRNRIITNHNKLLNKMHN----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
              + N  I N N +L  M N    +DG++   +   G     S       ++ VV+G+
Sbjct: 210 TALFSNTQIENPNLMLEGMPNYRSGVDGLRVSNSTKGGITFAASTTQNGIHMITVVLGV 268


>gi|307708560|ref|ZP_07645025.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus mitis NCTC
           12261]
 gi|307615476|gb|EFN94684.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus mitis NCTC
           12261]
          Length = 413

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 130/268 (48%), Gaps = 32/268 (11%)

Query: 31  MGKILF--LSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQD--EPRYPASLTK 82
           M KI+   LS+ +I  AS + A+        +I ++ N  ++  +++D  +P   AS+TK
Sbjct: 1   MKKIILTLLSLSVIGSASTVAAQDFNIAAKHAIAVEANTGKIL-YEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S    K       S + ++ + Y T EQ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYKLTTNSEASNVPMEARNY-TVEQLLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G + V +   K   ++ VV+
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVL 266


>gi|332363024|gb|EGJ40811.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK355]
          Length = 455

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 143/304 (47%), Gaps = 55/304 (18%)

Query: 24  IQRNIQLMGKILFLSII---------MISMASELHA--------KPKYSSIVIDVNKNQM 66
           +++ + L+G I+FL+ +         ++ MA +++         +PK SS+VID +   +
Sbjct: 5   VKKKLLLLG-IVFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPK-SSLVIDGSTGDV 62

Query: 67  TGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY------ 119
                 DE R PAS++K+MTLY++FE ++  K+   T I  + T   Q  + +Y      
Sbjct: 63  VWEDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVI--TATPQDQAIANIYEISNNK 120

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKN 178
           +     +T  + I   I  S+N  +     ++S ++   F   M+ KA+++GM NT + N
Sbjct: 121 IVAGVDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFN 180

Query: 179 ASGL-------------HDK---NQITTARDQAILGILLRKNFPQYYKYFSIRKFR---- 218
           ASG              +D    NQ TTARD AIL      + P+   Y +  K      
Sbjct: 181 ASGAAAVSFKGYYNPQNYDNTLSNQ-TTARDLAILAYNFVNHHPEILNYTNKAKVTVKAG 239

Query: 219 --YRNRIITNHNKLLNK---MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
             Y     T +  L      +  +DG+KTG + N  FN + +++  D  ++AV+MG+   
Sbjct: 240 TPYEETFDTYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDW 299

Query: 274 QERD 277
            ++D
Sbjct: 300 SDQD 303


>gi|224534683|ref|ZP_03675255.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia spielmanii A14S]
 gi|224513931|gb|EEF84253.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia spielmanii A14S]
          Length = 401

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 123/252 (48%), Gaps = 31/252 (12%)

Query: 48  LHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
           LHAK   S +++D +  ++   K+    +P ASLTK++T+Y        + + L + +P+
Sbjct: 38  LHAK---SIVLMDFDTKRVLYSKKPNLVFPPASLTKIVTIYTALIEAGKRNVKLKSIVPI 94

Query: 107 SKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           S +A    A  N S ++L++      E+ +  L   S ND S A  EF+ G    F  LM
Sbjct: 95  SDSASYYNAPLNSSLMFLEKGQIVNFEEILKGLSISSGNDASIAIAEFVVGDLNSFVNLM 154

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF----SIRKFR 218
           +     +G+ N  +   SG  ++N+I TA D A       K++ + +K+     S++ F 
Sbjct: 155 NINVMNLGLFNMHFVEPSGYSNENKI-TALDMA----FFVKSYIEKFKFMLNIHSLKYFV 209

Query: 219 Y---RNRIITNHNKLLN-KMHNI----------DGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           Y   +N   T  +K LN K  N           DG+KTGY + SG N+V + +  D  ++
Sbjct: 210 YPKSKNLGTTLASKFLNLKQRNANLLIDDYPYSDGLKTGYIKESGLNLVATAQKGDRRLI 269

Query: 265 AVVMGMPTSQER 276
           AVV+G+     R
Sbjct: 270 AVVLGVEKGINR 281


>gi|56418545|ref|YP_145863.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus kaustophilus
           HTA426]
 gi|261417510|ref|YP_003251192.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC61]
 gi|319765168|ref|YP_004130669.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC52]
 gi|461913|sp|Q05523|DACA_BACST RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA;
           Short=CPase; Short=DD-carboxypeptidase;
           Short=DD-peptidase; AltName: Full=Penicillin-binding
           protein 5; Short=PBP-5; Flags: Precursor
 gi|580849|emb|CAA48577.1| D-alanine carboxypeptidase [Geobacillus stearothermophilus]
 gi|56378387|dbj|BAD74295.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus kaustophilus
           HTA426]
 gi|261373967|gb|ACX76710.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC61]
 gi|317110034|gb|ADU92526.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC52]
          Length = 452

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 115/218 (52%), Gaps = 27/218 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQ-IP---VSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           AS+TKMMT Y++ + +++K++  +    P   V + +  +  S + L++   +T  +   
Sbjct: 65  ASMTKMMTEYLLLDAIKAKRVKWDQMYTPSDYVYRLSQDRALSNVPLRKDGKYTVRELYE 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN------- 186
           A+   SAN  + A  E I+GSEK F  +M++KAK++G+++  + NA+GL +K+       
Sbjct: 125 AMAIYSANGATVAIAEIIAGSEKNFVKMMNDKAKELGLKDYKFVNATGLSNKDLKGFHPE 184

Query: 187 -------QITTARDQAILGILLRKNFPQYYKYFSI--RKFRY--RNRI-ITNHNKLLNKM 234
                   + +AR  A+L   L K+ P+  K  SI  + FR   ++ I + N N +L  +
Sbjct: 185 GTSTNEENVMSARAMAMLAYRLLKDHPEVLKTASIPHKVFREGTKDEIKMDNWNWMLPGL 244

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 +DG+KTGYT  +G     + +     +++VVM
Sbjct: 245 VYGYEGVDGLKTGYTEFAGNCFTGTAKRNGVRLISVVM 282


>gi|125717597|ref|YP_001034730.1| DD-carboxypeptidase [Streptococcus sanguinis SK36]
 gi|125497514|gb|ABN44180.1| DD-carboxypeptidase, putative [Streptococcus sanguinis SK36]
          Length = 451

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 123/260 (47%), Gaps = 37/260 (14%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +PK SS+VID +   +      DE R PAS++K+MTLY++FE ++  K+   T I  + T
Sbjct: 44  RPK-SSLVIDGSTGDVVWEDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVI--TAT 100

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK-FAILM 162
              Q  + +Y      +     +T  + I   I  S+N  +     ++S ++   F   M
Sbjct: 101 PQDQATANIYEISNNKIVAGVDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRM 160

Query: 163 SNKAKKIGMQNTIYKNASGL-------------HDK---NQITTARDQAILGILLRKNFP 206
           + KA+++GM NT + NASG              +D    NQ TTARD AIL      + P
Sbjct: 161 NAKAQELGMTNTKWFNASGAAAISFKGYYNPQNYDNTLSNQ-TTARDLAILAYNFVNHHP 219

Query: 207 QYYKYFSIRKFR------YRNRIITNHNKLLNK---MHNIDGIKTGYTRNSGFNIVTSLR 257
           +   Y +  K        Y     T +  L      +  +DG+KTG + N  FN + +++
Sbjct: 220 EILNYTNKAKVTVKAGTPYEETFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIK 279

Query: 258 YKDDPIVAVVMGMPTSQERD 277
             D  ++AV+MG+    ++D
Sbjct: 280 RGDQRMIAVIMGVGDWSDQD 299


>gi|21674088|ref|NP_662153.1| D-alanyl-D-alanine carboxypeptidase [Chlorobium tepidum TLS]
 gi|21647242|gb|AAM72495.1| D-alanyl-D-alanine carboxypeptidase [Chlorobium tepidum TLS]
          Length = 474

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 126/273 (46%), Gaps = 35/273 (12%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSS-------IVIDVNKNQMT 67
           +  P+G  Y  R + L   + F  + +I + +    +P           IV +    +  
Sbjct: 1   MGRPHGRFYATRKV-LFTLLAFFVLTLIPLTASAKRRPAPEGEDAVAAYIVKETGSPEFL 59

Query: 68  GFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTY 125
             K  D PR PASLTK+MT  +  E   S +++    IP+    ATQ  P++   K    
Sbjct: 60  KSKNADTPRSPASLTKIMTCLLAIE---SGRMNDVVTIPLE---ATQVEPTRAGFKPGEQ 113

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS----G 181
           F     + A +  S+ND + A    + GS   F  +M+ +A+ +GM +T++ N +    G
Sbjct: 114 FRLRDLVKAAMVNSSNDAAFAIAIHLGGSLDAFVAMMNARARALGMSHTVFTNPAGYDRG 173

Query: 182 LHDKNQITTARDQAILGILLRK--NFPQYYKYFSIRKFRYRNRIITN-------HNKLLN 232
           ++  N+ TTARD   L IL  +   FP++     + +  + N + T        HNKLL 
Sbjct: 174 IYAGNR-TTARD---LVILTERAIRFPEFNAIAKLDRVDF-NELSTGKIYSLRTHNKLLE 228

Query: 233 KMHNIDGIKTGYTRNSGFNIVT-SLRYKDDPIV 264
           +     GIKTGYT  +G  ++  +LR   D +V
Sbjct: 229 RYPYSVGIKTGYTSMAGPCLIARALRNGKDMLV 261


>gi|288553434|ref|YP_003425369.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudofirmus OF4]
 gi|288544594|gb|ADC48477.1| D-alanyl-D-alanine carboxypeptidase S11 serine type [Bacillus
           pseudofirmus OF4]
          Length = 374

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 115/227 (50%), Gaps = 14/227 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++++ID    +    K    R YPAS+TK++T  +  E     + +L  ++ VS+     
Sbjct: 42  TAVLIDGATGETLWGKDSTKRMYPASVTKIITAIVAIE-----EGNLEEKVAVSENVMDV 96

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN-KAKKIGMQ 172
             +++YL      +  + +  L+  S ND   A  E + GSE+ FA  M+    ++IG++
Sbjct: 97  IGTRVYLLPGEEVSLLKLVQGLMINSGNDAGLAIAEHMDGSEEAFAKRMNRFVEEEIGVK 156

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-IRKFRY----RNRIITNH 227
           ++ + N  GL D+N  TTA+D A++     +N  + +K  +  ++  +        I NH
Sbjct: 157 DSHFTNPHGLFDENHYTTAKDLAMITKYAMEN--EVFKEIAQTKEMEWIGEGWETTIYNH 214

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           +++L     + G+K G+ + SGF + T++   D  ++AV +  P ++
Sbjct: 215 HRMLWDYDGVTGVKNGFVQRSGFTLSTAVERDDMELIAVTLNAPAAK 261


>gi|195978798|ref|YP_002124042.1| D-alanyl-D-alanine carboxypeptidase precursor DacA.3 [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|195975503|gb|ACG63029.1| D-alanyl-D-alanine carboxypeptidase precursor DacA.3 [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
          Length = 393

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 35/252 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +PK +SIV+D   +++      D PR PAS++KM TLYI+FE L   K+ L+T I  ++T
Sbjct: 42  RPK-ASIVVDAKTSEILWQDNIDMPRDPASMSKMFTLYILFEELAKGKVTLDTTITATET 100

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
              Q  SK+Y      +     +     I+  +  S+N  +     ++S ++    I   
Sbjct: 101 --DQAISKIYEISNNNIVAGVAYPIRDLIIMTVVPSSNAATVMIANYLSNNDASAFIDRI 158

Query: 164 NK-AKKIGMQNTIYKNASG----------LHDK-----NQITTARDQAILGILLRKNFPQ 207
           NK AK++GM NT + NASG          L +K     + ITTARD A L      N+P 
Sbjct: 159 NKTAKELGMTNTHFSNASGAIAQAFQGYYLPEKYDLTASNITTARDFATLIYYFLTNYPS 218

Query: 208 YYKYFSIRKFR------YRNRIITNHNKLLN---KMHNIDGIKTGYTRNSGFNIVTSLRY 258
              + +    R      Y     + ++ L +    +  +DG+KTG + ++ FN V + + 
Sbjct: 219 ILDFTNQTVVRTMVGTPYEEEFHSYNHSLPDGKFGIEGVDGMKTGSSPSAAFNAVVTAKR 278

Query: 259 KDDPIVAVVMGM 270
            +  ++ VV+G+
Sbjct: 279 GNTRLITVVLGV 290


>gi|322381780|ref|ZP_08055734.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154168|gb|EFX46490.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 386

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 18/225 (8%)

Query: 55  SSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           ++ +IDV+  ++  + Q  D+    AS TK+MT  I  E     +  L+  + V K AA 
Sbjct: 26  AAALIDVHSGRIL-YSQSGDKEMRVASTTKIMTAIIAIE-----QGRLSDMVKVGKNAAG 79

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           +  S LYLK     +    +  ++ RS ND +    E I GS + FA LM+ KA  +GM 
Sbjct: 80  KEGSSLYLKLGEEMSLHNLLYGMMLRSGNDAAITIAEHIGGSIEGFAYLMNEKASLLGMA 139

Query: 173 NTIYKNASGLHDKNQI---TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR------I 223
           +T + N SGL D  ++   ++A D A L     KN P +      +  +  N        
Sbjct: 140 HTHFTNPSGLDDGKEMKHYSSANDMAKLTAYALKN-PVFRDIVKTKTKKAPNPNANWDYS 198

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            +N NK+LN     DG+KTGYT+ +   +V+S    +  + AV +
Sbjct: 199 WSNKNKMLNLYEGADGVKTGYTKLAYRCLVSSATRGNQQLAAVTL 243


>gi|167745617|ref|ZP_02417744.1| hypothetical protein ANACAC_00309 [Anaerostipes caccae DSM 14662]
 gi|167654929|gb|EDR99058.1| hypothetical protein ANACAC_00309 [Anaerostipes caccae DSM 14662]
          Length = 316

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 71/123 (57%), Gaps = 7/123 (5%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQ 130
           +  YPAS+TK+MT  ++ E        L+  + + K     +P+   L+LK+    T E 
Sbjct: 89  DKAYPASITKIMTALLVLE-----NCRLDDVVTIDKDITFDDPAAVSLHLKKGDKITVEA 143

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  LI  SAND + A G  ++GS+KKF  +M+ +A+++G  NT ++N +GLH KN  TT
Sbjct: 144 LLNGLIVMSANDTAIALGRKVAGSDKKFVAMMNKRARELGATNTNFENPNGLHLKNHYTT 203

Query: 191 ARD 193
           A D
Sbjct: 204 AYD 206


>gi|227904514|ref|ZP_04022319.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus acidophilus ATCC
           4796]
 gi|227867723|gb|EEJ75144.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus acidophilus ATCC
           4796]
          Length = 432

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 116/244 (47%), Gaps = 29/244 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKT 109
           S+I ID N  Q+   K  +   P AS+TK++T+Y+    +++KKL  N ++     + K 
Sbjct: 50  SAIAIDSNSGQILYAKNADKTLPIASMTKLITVYLTLNAIKNKKLSWNQKVKPTASIVKV 109

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A     S + LK    +T  Q   A +  SAN  +   G+ I+GS+KKF   M  + KK 
Sbjct: 110 ANNAEYSNVPLKMGHSYTIRQLYQATLIESANGAAMLLGQTIAGSQKKFIDQMRAQVKKW 169

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++     A GL + N                 +A+D AI+G  L K +P+      + 
Sbjct: 170 GIEDAEIYTACGLPNGNVGKDAYPGVNKNAENTMSAKDMAIVGQHLLKEYPEILDTTKLA 229

Query: 216 --KFRYRNRI--ITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              F+  N+   + N N +L      ++ + +DG+KTG T  +G   + ++ +    ++ 
Sbjct: 230 HLDFKDGNKTTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVEHNGARLIT 289

Query: 266 VVMG 269
           VVMG
Sbjct: 290 VVMG 293


>gi|308171901|ref|YP_003918606.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens DSM
           7]
 gi|307604765|emb|CBI41136.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Bacillus amyloliquefaciens DSM 7]
 gi|328551709|gb|AEB22201.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens
           TA208]
          Length = 443

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 125/242 (51%), Gaps = 28/242 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLN-TQIP---VSKT 109
           ++I+I+ +  ++   K  + R P AS+TKMMT Y++ E ++  K+  + T  P   V + 
Sbjct: 43  AAIMIEASSGKILYSKNADKRLPIASMTKMMTEYLLLEAIKEGKVKWDQTYTPDDYVYEI 102

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +   + S + L++   +T ++   A+   SAN  + A  E ++G+E KF   M+ KAK++
Sbjct: 103 SQDNSLSNVPLRKDGKYTVKELYQAMAIYSANGAAIAVAEILAGTETKFVAKMNAKAKEL 162

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           GM N  +KN++GL +++                 +A+D A+L   L  ++P+  K  SI 
Sbjct: 163 GMTNYDFKNSTGLVNEDLHGKQPQGEGVKEESEVSAKDMALLADRLITDYPEVLKTTSIA 222

Query: 216 KFRYRNRI-----ITNHN----KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           K ++R        + N N     L+++   +DG+KTG T ++G    ++ +     ++ V
Sbjct: 223 KTKFRAGTDDEMDMPNWNFMLKGLVSEYPGVDGLKTGSTDSAGSCFTSTAQRNGMRVITV 282

Query: 267 VM 268
           V+
Sbjct: 283 VL 284


>gi|289422780|ref|ZP_06424618.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus
           anaerobius 653-L]
 gi|289156810|gb|EFD05437.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus
           anaerobius 653-L]
          Length = 313

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 98/207 (47%), Gaps = 30/207 (14%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D+  YPAS TK+ T Y + +  Q     LN +I +      +  S +YL+E   FTT Q 
Sbjct: 60  DQKIYPASTTKIWTAYCVLQKCQD----LNEKIKIGTMPEIEGSS-MYLEEGEVFTTRQL 114

Query: 132 ILALITRSANDVSTAFG-EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
           + +L+  S+NDV+      +  G E+KF   M+++AKK G  +T + N  GL D +  TT
Sbjct: 115 LESLLIHSSNDVAYVLARHYGGGDERKFIDFMNSEAKKFGFNHTHFNNPHGLPDTDHYTT 174

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRK---FRYRNRI-----ITNHNKLLN---------- 232
           A +   +  +   N     K    +K   F+  N I     + N NK LN          
Sbjct: 175 AEEMTNMARIAYGN--DIIKSIVAKKSVTFKKSNEIKLDRELYNSNKFLNSNMQMNYNGK 232

Query: 233 ----KMHNIDGIKTGYTRNSGFNIVTS 255
               K   +DGIKTGYT ++G  +V +
Sbjct: 233 DIPMKYDVVDGIKTGYTDDAGNCLVAT 259


>gi|225871201|ref|YP_002747148.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp. equi
           4047]
 gi|225700605|emb|CAW95136.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus equi
           subsp. equi 4047]
          Length = 393

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 35/252 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +PK +SIV+D   +++      D PR PAS++KM TLYI+FE L   K+ L+T I  ++T
Sbjct: 42  RPK-ASIVVDAKTSEILWQDNIDMPRDPASMSKMFTLYILFEELAKGKVTLDTTITATET 100

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
              Q  SK+Y      +     +     I+  +  S+N  +     ++S ++    I   
Sbjct: 101 --DQAISKIYEISNNNIVAGVAYPIRDLIIMTVVPSSNAATVMIANYLSNNDASAFIDRI 158

Query: 164 NK-AKKIGMQNTIYKNASG----------LHDK-----NQITTARDQAILGILLRKNFPQ 207
           NK AK++GM NT + NASG          L +K     + ITTARD A L      N+P 
Sbjct: 159 NKTAKELGMTNTHFSNASGAIAQAFQGYYLPEKYDLTASNITTARDFATLIYYFLTNYPS 218

Query: 208 YYKYFSIRKFR------YRNRIITNHNKLLN---KMHNIDGIKTGYTRNSGFNIVTSLRY 258
              + +    R      Y     + ++ L +    +  +DG+KTG + ++ FN V + + 
Sbjct: 219 ILDFTNQTVVRTMVGTPYEEEFHSYNHSLPDGKFGIEGVDGMKTGSSPSAAFNAVVTAKR 278

Query: 259 KDDPIVAVVMGM 270
            +  ++ VV+G+
Sbjct: 279 GNTRLITVVLGV 290


>gi|255020661|ref|ZP_05292723.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC
           51756]
 gi|254969897|gb|EET27397.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC
           51756]
          Length = 386

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 109/233 (46%), Gaps = 10/233 (4%)

Query: 55  SSIVIDVNKNQMTGFKQDE----PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           +++++DV  +Q+     DE    P  P+ L K+MT Y++ +      +  +  + VS  A
Sbjct: 45  AAVLLDVQTDQVL---MDEHGNRPLNPSGLVKLMTAYLLLQAEHQGLVRPDQNVQVSDRA 101

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S+++++     T  Q    L+    ND +    + ++GS   F  LM+  A ++G
Sbjct: 102 WHAQGSRMFIQPGLPVTVAQLERGLLIDGGNDAAIVIAQTVAGSVSGFVDLMNRDAAEMG 161

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           +++T + N  GL   +Q +TA D A L  +L +N P   +     K+ Y +    N+N L
Sbjct: 162 LKHTHFANPDGLPAPDQRSTALDVARLARILIENHPSVLQVAGQPKYTYNHITQYNYNPL 221

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP--TSQERDQKAL 281
             +   I+G+  G   +  +++  S       +VAVV+G    +S   D  AL
Sbjct: 222 AGE-KGINGLGVGLASSKHWDLAVSASRDGRSLVAVVLGAASRSSAGADASAL 273


>gi|295838237|ref|ZP_06825170.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB74]
 gi|197698211|gb|EDY45144.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB74]
          Length = 1017

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 68/236 (28%), Positives = 113/236 (47%), Gaps = 15/236 (6%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           PK     +DV+     G    +   P AS+ K+MT Y++      KK      I + + A
Sbjct: 664 PKSGQAAMDVDGLGSFGSSGAQKPVPIASVAKVMTAYLVLRDHPVKKGTDGASITMDQKA 723

Query: 111 ------ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
                 + QN S + +      +  + I A++  SAN+++     + +GSEK+F   M+ 
Sbjct: 724 EDDAGLSAQNESTVPVHAGQKLSQREAIEAIMLASANNIARQLARWDAGSEKEFVTKMNE 783

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII 224
            A  +GM+NT Y + SGL +K  ++TA DQ  LG +  K+ P + +   +  +   N   
Sbjct: 784 AANDLGMRNTTYTDPSGL-NKTTVSTAEDQVRLGKVAMKD-PLFREVVRMPSYEDSNGTT 841

Query: 225 -TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK----DDPIVAVVMGMPTSQE 275
            TN N+L+  M+N  GIKTG T  +G N++ +   +       IV  V+  P + E
Sbjct: 842 QTNWNRLV-PMNNTVGIKTGTTTAAGGNLLYAATKEVGGTTRTIVGAVLAQPPAPE 896


>gi|167462338|ref|ZP_02327427.1| D-alanyl-D-alanine carboxypeptidase [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 395

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 110/225 (48%), Gaps = 18/225 (8%)

Query: 55  SSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           ++ +IDV+  ++  + Q  D+    AS TK+MT  I  E  Q +   L+  + V K AA 
Sbjct: 35  AAALIDVHSGRIL-YSQSGDKEMRVASTTKIMTAIIAIE--QGR---LSDMVKVGKNAAG 88

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           +  S LYLK     +    +  ++ RS ND +    E I GS + FA LM+ KA  +GM 
Sbjct: 89  KEGSSLYLKLGEEMSLHNLLYGMMLRSGNDAAITIAEHIGGSIEGFAYLMNEKASLLGMA 148

Query: 173 NTIYKNASGLHDKNQI---TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR------I 223
           +T + N SGL D  ++   ++A D A L     KN P +      +  +  N        
Sbjct: 149 HTHFTNPSGLDDGKEMKHYSSANDMAKLTAYALKN-PVFRDIVKTKTKKAPNPNANWDYS 207

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            +N NK+LN     DG+KTGYT+ +   +V+S    +  + AV +
Sbjct: 208 WSNKNKMLNLYEGADGVKTGYTKLAYRCLVSSATRGNQQLAAVTL 252


>gi|297528386|ref|YP_003669661.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. C56-T3]
 gi|297251638|gb|ADI25084.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. C56-T3]
          Length = 452

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 115/218 (52%), Gaps = 27/218 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQ-IP---VSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           AS+TKMMT Y++ + +++K++  +    P   V + +  +  S + L++   +T  +   
Sbjct: 65  ASMTKMMTEYLLLDAIKAKRVKWDQMYTPSDYVYRLSQDRALSNVPLRKDGKYTVRELYE 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN------- 186
           A+   SAN  + A  E I+GSEK F  +M++KAK++G+++  + NA+GL +K+       
Sbjct: 125 AMAIYSANGATVAIAEIIAGSEKNFVKMMNDKAKELGLKDYKFVNATGLSNKDLKGFHPE 184

Query: 187 -------QITTARDQAILGILLRKNFPQYYKYFSI--RKFRY--RNRI-ITNHNKLLNKM 234
                   + +AR  A+L   L K+ P+  K  SI  + FR   ++ I + N N +L  +
Sbjct: 185 GTSTNEENVMSARAMAMLAYRLLKDHPEVLKTASIPHKVFREGTKDEIKMDNWNWMLPGL 244

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 +DG+KTGYT  +G     + +     +++VVM
Sbjct: 245 VYGYEGVDGLKTGYTEFAGNCFTGTAKRNGVRLISVVM 282


>gi|330684640|gb|EGG96344.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus
           epidermidis VCU121]
          Length = 412

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 102/198 (51%), Gaps = 23/198 (11%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGI 132
           PAS TK+MT+ ++++ ++S K+ +N ++ ++    K +   N +   LKE T  T  Q +
Sbjct: 69  PASTTKLMTMNLVYDDIKSGKIKMNDKVKITSRYEKMSELPNLTTFPLKEGTTVTINQLL 128

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK------- 185
                 S+N  +    E I GS  KF   M+ KAK +GM++T + N SG ++K       
Sbjct: 129 KQAALESSNAATLVLAEHIDGSSSKFTDRMNQKAKDLGMKDTKFTNPSGANNKILKPYEP 188

Query: 186 -----NQI--TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL----NKM 234
                + I  TTARD ++L   +    P   K   + K +  N+ + N N  L    + M
Sbjct: 189 KSYKDDTISHTTARDMSLLSNHILNAHPDVLKITKLSKDKQSNQELHNTNTSLPNEADGM 248

Query: 235 HNIDGIKTGYTRNSGFNI 252
            ++DG+KTG T ++G+N+
Sbjct: 249 KDVDGLKTG-TSDNGYNL 265


>gi|195978797|ref|YP_002124041.1| D-alanyl-D-alanine carboxypeptidase precursor DacA.2 [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|195975502|gb|ACG63028.1| D-alanyl-D-alanine carboxypeptidase precursor DacA.2 [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
          Length = 411

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 132/252 (52%), Gaps = 33/252 (13%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---A 111
           +I +++   ++   K+ + + P ASLTK++T+Y++ + +++ +L  ++Q+ +S+ A   A
Sbjct: 31  AIAVEMTTGKILYAKEAQQKAPIASLTKLLTVYLVLKEIKAGRLQWDSQVILSEYALQLA 90

Query: 112 TQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
           T     NP+     E+  +T ++ + + +  SAN  + A  E I+GSE  F  +M  + +
Sbjct: 91  TDPDISNPAF----EQRPYTIKELVESSLIISANSSAVALAEHIAGSEPTFVDMMKKQLE 146

Query: 168 KIGMQNTIYKNASGLH---------------DKNQITTARDQAILGILLRKNFPQYYKYF 212
             G+++    NASGL+               D+NQ+ TARD A++   L ++FP+     
Sbjct: 147 AWGIRDYRLVNASGLNNSMLKGHLYPGSQPDDENQM-TARDLALIAQQLLQDFPEVLTIS 205

Query: 213 SIRKFRYRNRIITNHNKLLNKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           S  + ++  + + N N LL         +DG+KTG T  +G  ++ +    +  +++V++
Sbjct: 206 SQAQLKWGEKDLPNSNLLLAGREMARTGVDGLKTGTTSQAGQTMIATAVQDNMRVISVIL 265

Query: 269 GMPTSQERDQKA 280
               S + D++A
Sbjct: 266 HADQS-DTDERA 276


>gi|331084355|ref|ZP_08333459.1| hypothetical protein HMPREF0992_02383 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330401619|gb|EGG81200.1| hypothetical protein HMPREF0992_02383 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 417

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 118/256 (46%), Gaps = 41/256 (16%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +E RYPAS TK+MT  II E +     ++     +    A  N S +  +     T EQ 
Sbjct: 64  NEIRYPASTTKVMTALIILENIPDLNKNITFTDIILPDLAPGN-STINAQVGEVLTVEQC 122

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + A++  SAN+V T     ++GS + F  +M+ KA +IG  NT + NA+GL D N  TTA
Sbjct: 123 LYAIMLASANEVCTQMAVEVAGSVENFTAMMNAKAAEIGCTNTHFVNANGLPDPNHYTTA 182

Query: 192 RDQAILGILLRKNF--PQYYKYFSIRKFRY-------RNRIITNHNKLLNKMHNIDG--- 239
            D   L ++LR+      + K     K+          +R + NHN LL     +DG   
Sbjct: 183 YD---LALILREAVKNEAFCKIAGAAKYTIPPTNKTAASRNMENHNALL-----VDGKYY 234

Query: 240 ------IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
                  KTG+T  +   +VT+   +D  ++ VV+      E D++       F + KTL
Sbjct: 235 YEGAIAGKTGHTEAARNTLVTAASREDMTLICVVL----RSENDER-------FTDTKTL 283

Query: 294 KHQQTHRKDNLSSTSL 309
                +  DN  S SL
Sbjct: 284 FD---YGFDNFHSQSL 296


>gi|317132149|ref|YP_004091463.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ethanoligenens
           harbinense YUAN-3]
 gi|315470128|gb|ADU26732.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ethanoligenens
           harbinense YUAN-3]
          Length = 443

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 133/287 (46%), Gaps = 31/287 (10%)

Query: 30  LMGKILFLSI-IMISMASELHAKPKYS---SIVIDVNKNQMTGF-----KQDEPRYPASL 80
           +M  +LFL++ + IS    L   P  S   S V  VN +  TG        D   YPAS+
Sbjct: 5   IMTVVLFLAVAVGISSLPVLAWDPPASVSSSTVYLVNAD--TGAVIYEKNADAKVYPASI 62

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEKTYFTTEQGILALI 136
           TK+MT  +    +Q     ++T + V+K      +  + S L LK     T  Q +  L+
Sbjct: 63  TKLMTALLT---MQKYSNAMDTVLTVTKDDIAPLSGTDSSVLGLKPGEQITVRQLLYGLL 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND +      + GS   F  +M+ +AKKIG  +T Y N  GL D N  TTA+D  +
Sbjct: 120 VKSGNDCAMVLARNVGGSVSAFVDMMNAEAKKIGADHTHYANPEGLQDPNHYTTAKDVYL 179

Query: 197 LG-ILLRKNFPQYY---KYFSIRKFRYRNRI-ITNHNKLLNK-----MHNIDGIKTGYTR 246
           +   ++  +F       + ++I        + ITN N LL+      + ++ GIKTG T 
Sbjct: 180 IARQVMANDFLAGVVDTQSYTIPATNMTTAVKITNTNLLLSSGSKYYLSSVKGIKTGTTT 239

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
           ++G  +V+  + K     AVVMG    +E     +   T+F + K L
Sbjct: 240 DAGACLVSMAQSKGMTYYAVVMG---GKETTTNGVVDNTAFADTKAL 283


>gi|224477927|ref|YP_002635533.1| penicillin binding protein 4 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222422534|emb|CAL29348.1| penicillin binding protein 4 [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 409

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 124/242 (51%), Gaps = 24/242 (9%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGI 132
           PAS TK+MT+Y++ E ++  K+  +  + ++    K A   N +   LK K  +T +Q +
Sbjct: 70  PASTTKLMTVYLVLEAIEQGKIKPSDSVKITPSYEKLAQLPNLTTFPLKNKQTYTIDQLL 129

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-------- 184
              +  S+N  +    + +SG   KF   M+ KAK++GM+++ + N SG ++        
Sbjct: 130 KQAMLESSNAATLVLADKLSGDTSKFTDNMNAKAKELGMKHSHFTNPSGANNLLIQQFAP 189

Query: 185 ---KNQI---TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL----NKM 234
              K++    +TA+D  IL   + KN+P+  +Y S++  +   + +TN N  L    + +
Sbjct: 190 KAYKSETFSHSTAQDMTILSKAIIKNYPKVLQYSSLKTDQQYGKKLTNTNLSLPGSQDAL 249

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM-PTSQERDQKALELITSFLEKKTL 293
           +   G+KTG T ++G+N+V + +  +  I   VM + P   E  + A + I + L +   
Sbjct: 250 NGAQGLKTG-TSDNGYNLVLTTKRNNLRIDTTVMNVQPYPSETSKHARQKIANALTEDAY 308

Query: 294 KH 295
           KH
Sbjct: 309 KH 310


>gi|138893689|ref|YP_001124142.1| D-alanine carboxypeptidase [Geobacillus thermodenitrificans NG80-2]
 gi|196251175|ref|ZP_03149851.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16]
 gi|134265202|gb|ABO65397.1| D-alanine carboxypeptidase [Geobacillus thermodenitrificans NG80-2]
 gi|196209316|gb|EDY04099.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16]
          Length = 452

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 110/218 (50%), Gaps = 27/218 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLN-TQIP---VSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           AS+TKMMT Y++ + +++K++  + T  P   V + +  ++ S + L++   +T  +   
Sbjct: 65  ASMTKMMTEYLLLDAIKAKRVKWDQTYTPSDYVYRLSQDRSLSNVPLRKDGQYTVRELYE 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----------- 182
           A+   SAN  + A  E I+GSEK F  +M+ K K++G+++  + N++GL           
Sbjct: 125 AMAIYSANAATVAIAEIIAGSEKNFVRMMNEKGKELGLKDYKFVNSTGLSNSDLKGFHPQ 184

Query: 183 ---HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM 234
               D+  + +AR  A L   L K+ P+  +  SI K  +R        + N N +L  +
Sbjct: 185 GTSQDEENVMSARAMATLAYRLLKDHPEVLETASIPKKLFREGTDDEIRMDNWNWMLPGL 244

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 +DG+KTGYT  +G     + +     +++VVM
Sbjct: 245 VYGYEGVDGLKTGYTEFAGNCFTGTAKRNGVRLISVVM 282


>gi|291536086|emb|CBL09198.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis M50/1]
          Length = 414

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 20/212 (9%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK++T  I  E        L++++ VS  AA+Q    L ++E   F  +  +  L+ 
Sbjct: 74  ASTTKILTCIIALE-----NCDLDSEVTVSTLAASQPKVHLGMREGQKFYLKDLLYGLML 128

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ----ITTARD 193
            S ND + A  E I+G+   FA LM++KA++IG +++ +   +GL  KN+     TTA D
Sbjct: 129 ESYNDCAVAIAEHIAGTTGDFAKLMNDKAEEIGCEDSYFITPNGLDAKNENGFHHTTAAD 188

Query: 194 QAILGILLRKNFPQYYKYFSI-RKFRYR--------NRIITNHNKLLNKMHNIDGIKTGY 244
            +++     K      ++ +I R+ +Y+        +    NHN  L  M      KTG+
Sbjct: 189 LSLIMRYCIKTSEMAEQFLTITREGQYQFSDIDGKNSYTCCNHNAFLQMMDGALSGKTGF 248

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVM--GMPTSQ 274
           T N+G+  V +L+  D   +  ++  G P ++
Sbjct: 249 TGNAGYCYVGALKRDDRTFIVALLACGWPNNK 280


>gi|296876825|ref|ZP_06900873.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432327|gb|EFH18126.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis ATCC 15912]
          Length = 449

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 119/256 (46%), Gaps = 34/256 (13%)

Query: 54  YSSIVIDVN-KNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +SS++ID N  N +     DE R PAS++K+MTLY++FE + + K+  +T I    TA+ 
Sbjct: 47  HSSLIIDGNTGNVLWKDNIDEVRDPASMSKLMTLYLLFEDMANGKISKDTVI--KATASD 104

Query: 113 QNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNK 165
           Q   K+Y      +     +T  + I   +  S+N  +      +S ++   F   M+ K
Sbjct: 105 QAIGKIYEISNNNIVAGVDYTIPELITMTVVPSSNVSTLMLANLMSNNDPDAFIERMNAK 164

Query: 166 AKKIGMQNTIYKNASGL---------------HDKNQITTARDQAILGILLRKNFPQYYK 210
           AK++GM NT++ N SG                +D    TTARD  IL       +P    
Sbjct: 165 AKELGMTNTVWNNPSGAAISTLQGYYQVNNYPNDAANQTTARDLGILVYHFINQYPDILN 224

Query: 211 Y-----FSIRKFRYRNRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           Y      +++K          +N  L      +  +DG+KTG +    FN + +++  + 
Sbjct: 225 YTNQAQVTVKKGTPYEETFDTYNYSLPGAKYALKGVDGLKTGSSPRGAFNYIATIKRGNQ 284

Query: 262 PIVAVVMGMPTSQERD 277
            ++AV+MG+    ++D
Sbjct: 285 RLIAVIMGVGDWADQD 300


>gi|167773011|ref|ZP_02445064.1| hypothetical protein ANACOL_04399 [Anaerotruncus colihominis DSM
           17241]
 gi|167664944|gb|EDS09074.1| hypothetical protein ANACOL_04399 [Anaerotruncus colihominis DSM
           17241]
          Length = 763

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 117/247 (47%), Gaps = 17/247 (6%)

Query: 36  FLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFE 91
           F + +    A EL   P+    S+I++D +  Q+   K  ++  YPAS+TK+MT  +  E
Sbjct: 41  FPARVFADDAQELFDPPELYAESAILVDADTGQILLEKNMNKKMYPASITKIMTCLLAME 100

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
             ++K   + T          ++ + + L      T EQ   A++  SAND ++     I
Sbjct: 101 --RAKPGDVVTVTDEVVAEVPRDTTHIALTGGEQLTVEQLEYAMMVESANDAASVLAAHI 158

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           SGS + FA+LM+++AK++G ++T + NA+GL D +  T+A D A++       +P++   
Sbjct: 159 SGSTQAFAMLMNDRAKELGAKDTHFTNANGLPDPSHYTSAYDMALI-TRAAMQYPEFRSL 217

Query: 212 FSIRKF-------RYRNRIITNHNKLLNKMHNIDGI---KTGYTRNSGFNIVTSLRYKDD 261
                +       +   R + N N +        G    KTG+T  +G  +VT       
Sbjct: 218 AGTTSYEIPPTNKQSETRRLNNRNYMFTLNDTYPGAFAGKTGWTEEAGHTLVTLAERDGV 277

Query: 262 PIVAVVM 268
            ++ +VM
Sbjct: 278 TLICIVM 284


>gi|58337864|ref|YP_194449.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus acidophilus
           NCFM]
 gi|58255181|gb|AAV43418.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus acidophilus
           NCFM]
          Length = 432

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 116/244 (47%), Gaps = 29/244 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKT 109
           S+I ID N  Q+   K  +   P AS+TK++T+Y+    +++KKL  N ++     + K 
Sbjct: 50  SAIAIDSNSGQILYAKNADKTLPIASMTKLITVYLTLNAIKNKKLSWNQKVKPTASIVKV 109

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A     S + LK    +T  Q   A +  SAN  +   G+ I+GS+KKF   M  + KK 
Sbjct: 110 ANNAEYSNVPLKMGHSYTIRQLYQATLIESANGAAMLLGQTIAGSQKKFIDQMRAQVKKW 169

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++     A GL + N                 +A+D AI+G  L K +P+      + 
Sbjct: 170 GIEDAEIYTACGLPNGNVGKDAYPGVNKNAENTMSAKDMAIVGQHLLKEYPEILDTTKLA 229

Query: 216 --KFRYRNRI--ITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              F+  N+   + N N +L      ++ + +DG+KTG T  +G   + ++ +    ++ 
Sbjct: 230 HLDFKDGNKTTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVEHNGARLIT 289

Query: 266 VVMG 269
           VVMG
Sbjct: 290 VVMG 293


>gi|326205032|ref|ZP_08194882.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           papyrosolvens DSM 2782]
 gi|325984837|gb|EGD45683.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           papyrosolvens DSM 2782]
          Length = 405

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 101/198 (51%), Gaps = 14/198 (7%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           P+ + K+MT  +  E     K  LN ++ +SK AA+ N   L +  +  +T E  + A++
Sbjct: 57  PSVMCKLMTALVTIE-----KTDLNAKVTISKNAASFNGLNLVVGNQ--YTVEDLLYAVM 109

Query: 137 TRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
               ND + A  E++  G  +KF   M+ KAK++ +++T + N +GL++K+Q T+A D A
Sbjct: 110 LSQGNDAAVALAEYVGDGDIQKFVRYMNTKAKELSLKDTYFVNPTGLYEKSQYTSANDIA 169

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRN----RIITNHNKLLNKMHNIDGIKTGYTRNS-GF 250
           +L I    +   +   F  R F + N     I+TN N L      +DG K G   N   F
Sbjct: 170 LL-IKAAISNNTFNVIFGARGFGWLNGNDSSILTNQNTLFWSYKGVDGGKLGANTNPQSF 228

Query: 251 NIVTSLRYKDDPIVAVVM 268
           + VT+    D  ++AVV 
Sbjct: 229 SAVTTAFQNDKRLIAVVF 246


>gi|313682994|ref|YP_004060732.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155854|gb|ADR34532.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sulfuricurvum
           kujiense DSM 16994]
          Length = 266

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 110/243 (45%), Gaps = 23/243 (9%)

Query: 57  IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D+   QM   K+  +  +PASLTK+MT  +  E+ +     LN  + +++      P
Sbjct: 34  LVKDMTSKQMLYSKEPFKELHPASLTKVMTALLAIEHGK-----LNQPVTITREMTKVEP 88

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           +    +       E  I A + +S ND + A    I GSE+ F  +M+ KAKKIGM +T 
Sbjct: 89  TIAGYRRGDVIILEDLIKAAMIKSDNDAAKAIAISIGGSEEHFVEMMNAKAKKIGMNHTH 148

Query: 176 YKNASGLHDKNQITTARD------QAI----LGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
           + N  G  DK   +T +D       AI       + R N   YY     RKF        
Sbjct: 149 FMNPCGYDDKKHYSTPQDLLKMTEYAIKNKKFNDISRLNEHTYYSLNKHRKF-----YAY 203

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            HN+LLN+     G+KTGYT  +G  ++   R K D    V++ M    +R + A  +  
Sbjct: 204 THNRLLNRYQYAVGVKTGYTAKAGPCLIA--RAKKDGKDCVIVMMNAKGDRWKTAKNIFE 261

Query: 286 SFL 288
             L
Sbjct: 262 QVL 264


>gi|126650121|ref|ZP_01722354.1| DacB [Bacillus sp. B14905]
 gi|126593293|gb|EAZ87255.1| DacB [Bacillus sp. B14905]
          Length = 348

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 118/259 (45%), Gaps = 31/259 (11%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEY 92
           +L + ++M+ +     A+      V+D +  ++        R P ASLTK+ T  +  E 
Sbjct: 1   MLMIIVLMVILPQTSFARGGSGYAVLDGDTGRVLIGSNSNERLPIASLTKIWTALVAIE- 59

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
                  L  ++ +S  AA    S +YL+     T E  +  L+ RS ND +TA  E + 
Sbjct: 60  ----NSDLQEEVVISPKAAMAEGSSIYLQAGETVTVETLLYGLMLRSGNDAATALAEHVG 115

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA-ILGILLR-KNFPQYYK 210
           GS + F  LM+ +A   G+ NT++ N SGLH ++ +++ARD A +L + L+ K F +   
Sbjct: 116 GSVEGFVKLMNERAVIAGLTNTVFMNPSGLHHEDHLSSARDTAEMLRVALQNKTFEKIAS 175

Query: 211 YFSIRKFRYRNRIITNHNKLLNK------------------MHNIDGI----KTGYTRNS 248
               R       +  N ++LL +                  + +  G+    KTG+T+ +
Sbjct: 176 TVLYRANTVNGMLWENKHRLLREGSGMAAEIDDETEQPVSSLKSATGVAYAGKTGFTKVA 235

Query: 249 GFNIVTSLRYKDDPIVAVV 267
           G  + T+ + KD     VV
Sbjct: 236 GRTLATAFQ-KDGQTCIVV 253


>gi|328909969|gb|AEB61565.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Bacillus amyloliquefaciens LL3]
          Length = 418

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 124/242 (51%), Gaps = 28/242 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLN-TQIP---VSKT 109
           ++I+I+ +  ++   K  + R P AS+TKMMT Y++ E ++  K+  + T  P   V + 
Sbjct: 18  AAIMIEASSGKILYSKNADKRLPIASMTKMMTEYLLLEAIKEGKVKWDQTYTPDDYVYEI 77

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +   + S + L++   +T ++   A+   SAN  + A  E ++G+E KF   M+ KAK++
Sbjct: 78  SQDNSLSNVPLRKDGKYTVKELYQAMAIYSANGAAIAVAEILAGTETKFVAKMNAKAKEL 137

Query: 170 GMQNTIYKNASG-----LHDK---------NQITTARDQAILGILLRKNFPQYYKYFSIR 215
           GM N  +KN++G     LH K             +A+D A+L   L  ++P+  K  SI 
Sbjct: 138 GMTNYDFKNSTGLVNEDLHGKQPQGEGVKEESEVSAKDMALLADRLITDYPEVLKTTSIA 197

Query: 216 KFRYRNRI-----ITNHN----KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           K ++R        + N N     L+++   +DG+KTG T ++G    ++ +     ++ V
Sbjct: 198 KTKFRAGTDDEMDMPNWNFMLKGLVSEYPGVDGLKTGSTDSAGSCFTSTAQRNGMRVITV 257

Query: 267 VM 268
           V+
Sbjct: 258 VL 259


>gi|319945575|ref|ZP_08019827.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus australis
           ATCC 700641]
 gi|319748174|gb|EFW00416.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus australis
           ATCC 700641]
          Length = 413

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 109/220 (49%), Gaps = 22/220 (10%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           DE +    ++ ++T Y+++E +Q  K+ L   + +S  A    A +  S + ++ + Y  
Sbjct: 50  DEKKEVGGISNLLTTYLVYEAIQQGKISLTDDVDISDKAYQLTAIEGISNVPMEARKYKV 109

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---- 183
            +  + AL+  +AN  + A  E ++GSE+KF +LM  K K+ G+ +    NASGL+    
Sbjct: 110 KDL-LTALLVSNANSAAIALAEKVAGSEEKFVLLMKAKLKEWGITDATIVNASGLNQSII 168

Query: 184 DKNQIT---------TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
           D ++           +A D A++   L +++P+  K  S+    +    + + N +L  M
Sbjct: 169 DGDEENKKKNNENKLSAYDVAVIAKHLLEDYPEVTKITSLSHAEFAGIQLESSNYMLENM 228

Query: 235 HN----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
            N    +DG+KTG +   G + V S       ++ VV+G+
Sbjct: 229 PNYRAGVDGLKTGNSEKGGISFVASTNQNGIRMITVVIGV 268


>gi|319744055|gb|EFV96432.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus agalactiae
           ATCC 13813]
          Length = 411

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 127/247 (51%), Gaps = 28/247 (11%)

Query: 29  QLMGKILFLSII--MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMT 85
           +++  IL LS I  M ++++E        ++ +D++  ++   K  ++P   ASLTK+MT
Sbjct: 3   KIITSILLLSCIFFMPTISAESFNASAKHALAVDLDSGKILYEKDANKPAAIASLTKLMT 62

Query: 86  LYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           +Y++++ + +  L  NT++ +S    +     + S + L EK  +T +Q + A +  SAN
Sbjct: 63  VYMVYKEIDNGNLKWNTKVNISDYPYQLTRESDASNVPL-EKRRYTVKQLVDAAMISSAN 121

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL---------------HDKN 186
             + A  E ISG+E KF   M+ + +K G+ ++   NASGL               +D+N
Sbjct: 122 SAAIALAEHISGTESKFVDKMTAQLEKWGIHDSHLVNASGLNNSMLGNHIYPKSSQNDEN 181

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKT 242
           ++ +ARD AI+   L   +P   K  S    ++   I+ ++N +L  M      I G+KT
Sbjct: 182 KM-SARDIAIVAYHLVNEYPSILKITSKSVAKFDKDIMHSYNYMLPDMPVFRPGITGLKT 240

Query: 243 GYTRNSG 249
           G T  +G
Sbjct: 241 GTTELAG 247


>gi|291539057|emb|CBL12168.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis XB6B4]
          Length = 423

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 20/212 (9%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK++T  I  E        L++++ VS  AA+Q    L ++E   F  +  +  L+ 
Sbjct: 83  ASTTKILTCIIALE-----NCDLDSEVTVSTLAASQPKVHLGMREGQKFYLKDLLYGLML 137

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ----ITTARD 193
            S ND + A  E I+G+   FA LM++KA++IG +++ +   +GL  KN+     TTA D
Sbjct: 138 ESYNDCAVAIAEHIAGTTGDFAKLMNDKAEEIGCEDSYFITPNGLDAKNENGFHHTTAAD 197

Query: 194 QAILGILLRKNFPQYYKYFSI-RKFRYR--------NRIITNHNKLLNKMHNIDGIKTGY 244
            +++     K      ++ +I R+ +Y+        +    NHN  L  M      KTG+
Sbjct: 198 LSLIMRYCIKTSEMAEQFLTITREGQYQFSDIDGKNSYTCCNHNAFLQMMDGALSGKTGF 257

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVM--GMPTSQ 274
           T N+G+  V +L+  D   +  ++  G P ++
Sbjct: 258 TGNAGYCYVGALKRDDRTFIVALLACGWPNNK 289


>gi|187778439|ref|ZP_02994912.1| hypothetical protein CLOSPO_02033 [Clostridium sporogenes ATCC
           15579]
 gi|187772064|gb|EDU35866.1| hypothetical protein CLOSPO_02033 [Clostridium sporogenes ATCC
           15579]
          Length = 418

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 98/197 (49%), Gaps = 18/197 (9%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D+P  PAS TK+MT  +  E     + +L+  + + +     + SK+Y+ E         
Sbjct: 56  DKPYPPASTTKIMTALLTLE-----RGNLDDIVTIGRKPPLADGSKIYILEGEKIKVRDL 110

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  L+  SAND + A  E++SGS   F+  M+ +AK++G  +T + N SGL++    T+A
Sbjct: 111 LYGLLLASANDCAEALAEYLSGSLDNFSKDMNKRAKELGCTSTNFVNPSGLYNDKHRTSA 170

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRY-------RNRIITNHNKLLNKMHN-----IDG 239
           RD AI+   L K  P+Y K  +   +           R + N N+L+ K  N      +G
Sbjct: 171 RDLAIIMNELVKQ-PEYSKIATTLSYNIPPTNKSKEKRPLWNENRLIQKHSNFYYKGCEG 229

Query: 240 IKTGYTRNSGFNIVTSL 256
            KTGYT  S  + V S+
Sbjct: 230 GKTGYTVQSDHSYVASV 246


>gi|240146057|ref|ZP_04744658.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis
           L1-82]
 gi|257201873|gb|EEV00158.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis
           L1-82]
          Length = 414

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 20/212 (9%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK++T  I  E        L++++ VS  AA+Q    L ++E   F  +  +  L+ 
Sbjct: 74  ASTTKILTCIIALE-----NCDLDSEVTVSTLAASQPKVHLGMREGQKFYLKDLLYGLML 128

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ----ITTARD 193
            S ND + A  E I+G+   FA LM++KA++IG +++ +   +GL  KN+     TTA D
Sbjct: 129 ESYNDCAVAIAEHIAGTTGDFAKLMNDKAEEIGCEDSYFITPNGLDAKNENGFHHTTAAD 188

Query: 194 QAILGILLRKNFPQYYKYFSI-RKFRYR--------NRIITNHNKLLNKMHNIDGIKTGY 244
            +++     K      ++ +I R+ +Y+        +    NHN  L  M      KTG+
Sbjct: 189 LSLIMRYCIKTSEMAEQFLTITREGQYQFSDIDGKNSYTCCNHNAFLQMMDGALSGKTGF 248

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVM--GMPTSQ 274
           T N+G+  V +L+  D   +  ++  G P ++
Sbjct: 249 TGNAGYCYVGALKRDDRTFIVALLACGWPNNK 280


>gi|196040350|ref|ZP_03107651.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           NVH0597-99]
 gi|196028835|gb|EDX67441.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           NVH0597-99]
          Length = 338

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 123/229 (53%), Gaps = 17/229 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S+I+ID N  ++   K +E     A+L+K+MT YI+ E L    + L+  + +S     A
Sbjct: 37  SAILIDANSGEVVYKKNEETSIQSATLSKLMTEYIVLEQLDKGNIQLDEVVKISNEVFRA 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             +P ++  K+KT  T    +  L+    N  + A  E I+G+E KF  LM+ KAK + +
Sbjct: 97  ETSPIQVTSKDKT--TVRDLLHTLLLTGNNRSALALAEHIAGNEDKFTQLMNEKAKHLKL 154

Query: 172 -QNTIYKNASGL-HDKNQI--TTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIIT 225
            Q++ + NA+G+ +D N++  TTA + A L   L  +FP        +  +F +++  + 
Sbjct: 155 SQSSPFLNATGMNNDTNKLSTTTAIEVAKLATQLVTDFPDVLNVTKLTSYQFTFKDTKVF 214

Query: 226 NHNKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N NK+   LN   K   +DG++T ++ N  ++ V++ +  D  +++V++
Sbjct: 215 NTNKMIYSLNKNIKHQGVDGLQTSFSTNGNYSFVSTAKQGDTRLISVIL 263


>gi|301054094|ref|YP_003792305.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis CI]
 gi|300376263|gb|ADK05167.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 327

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 122/229 (53%), Gaps = 17/229 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S+I+ID N  ++   K +E     A+L+K+MT YI+ E L    + L+  + +S     A
Sbjct: 26  SAILIDANSGEVVYKKNEETSIQSATLSKLMTEYIVLEQLDKGNIQLDEVVKISNEVFRA 85

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             +P ++  K+KT  T    + AL+    N  + A  E I+G+E  F  LM+ KAK++ +
Sbjct: 86  ETSPIQVTSKDKT--TVRDLLHALLLTGNNRSTLALAEHIAGNEDNFTQLMNEKAKQLKL 143

Query: 172 -QNTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIIT 225
            Q + + NA+G++   +K   TTA +   L   L  +FP       +   +F +++  + 
Sbjct: 144 SQPSPFLNATGMNNGTNKLSTTTAIEVGKLATRLVTDFPDVLNVTKLTSYQFTFKDTKVF 203

Query: 226 NHNKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N NK+   LN   K+  +DG++T ++ NS ++ V++ +  D  +++V++
Sbjct: 204 NTNKMIYSLNKNIKLQGVDGLQTSFSTNSNYSFVSTAKRGDTRLISVIL 252


>gi|222152531|ref|YP_002561706.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus uberis 0140J]
 gi|222113342|emb|CAR40942.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus uberis
           0140J]
          Length = 416

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 129/255 (50%), Gaps = 27/255 (10%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           + H K K S+I  DV+  ++   K ++   P ASL+K++T Y++++ ++S KL  +T + 
Sbjct: 28  DFHVKAK-SAIAFDVSTGKVLYQKNEKEVLPVASLSKVLTTYLVYKEVKSGKLSWDTPVT 86

Query: 106 VS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
           +S    +     + S + L  + Y T ++ + A++  +AN  + A  E ISG+E +F  L
Sbjct: 87  ISNYPYELTTNYSISNVPLDARQY-TVKELLNAVLVTNANSAAIALAEKISGTEPRFVDL 145

Query: 162 MSNKAKKIGMQNTIYKNASGL---------------HDKNQITTARDQAILGILLRKNFP 206
           M+ + K+ G+++    NA+GL                D+NQ+ +A D AI+   L   FP
Sbjct: 146 MTKQLKEWGIKDAKLVNATGLSNAILGDHIYPYSTSDDENQM-SALDLAIVSNHLLSEFP 204

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHN----IDGIKTGYTRNSGFNIVTSLRYKDDP 262
           +  K+       + N+ I ++N +L  M N    ++G+   Y+  SG + + S    +  
Sbjct: 205 EVLKHTQKASATFSNQKIFSYNYMLKGMPNYRDGVNGLFVAYSEKSGASFLASSTENNMS 264

Query: 263 IVAVVMGMPTSQERD 277
           +V VV+    S E +
Sbjct: 265 VVTVVLNAEQSNEEE 279


>gi|322389162|ref|ZP_08062723.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis ATCC 903]
 gi|321144067|gb|EFX39484.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis ATCC 903]
          Length = 452

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 119/256 (46%), Gaps = 34/256 (13%)

Query: 54  YSSIVIDVN-KNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +SS++ID N  N +     DE R PAS++K+MTLY++FE + + K+  +T I    TA+ 
Sbjct: 47  HSSLIIDGNTGNVLWKDNIDEVRDPASMSKLMTLYLLFEDMANGKISKDTVI--KATASD 104

Query: 113 QNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNK 165
           Q   K+Y      +     +T  + I   +  S+N  +      +S ++   F   M+ K
Sbjct: 105 QAIGKIYEISNNNIVAGVDYTIPELITMTVVPSSNVSTLMLANLMSNNDPDAFIERMNAK 164

Query: 166 AKKIGMQNTIYKNASGL---------------HDKNQITTARDQAILGILLRKNFPQYYK 210
           AK++GM NT++ N SG                +D    TTARD  IL       +P    
Sbjct: 165 AKELGMTNTVWNNPSGAAISTLQGYYQVNNYPNDAANQTTARDLGILVYHFINQYPDILN 224

Query: 211 Y-----FSIRKFRYRNRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           Y      +++K          +N  L      +  +DG+KTG +    FN + +++  + 
Sbjct: 225 YTNQAQVTVKKGTPYEETFDTYNYSLPGAKYALKGVDGLKTGSSPRGAFNYIATIKRGNQ 284

Query: 262 PIVAVVMGMPTSQERD 277
            ++AV+MG+    ++D
Sbjct: 285 RLIAVIMGVGDWADQD 300


>gi|258645732|ref|ZP_05733201.1| methylenetetrahydrofolate reductase [Dialister invisus DSM 15470]
 gi|260403101|gb|EEW96648.1| methylenetetrahydrofolate reductase [Dialister invisus DSM 15470]
          Length = 330

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 105/220 (47%), Gaps = 11/220 (5%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D N   +   K+ E + YPAS TK++T  I  E  + K   L     ++  A  Q
Sbjct: 56  SAVLMDGNTGDIIAQKEGELKIYPASTTKILTCIIALEEGREK---LEADAVITPLAIGQ 112

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           + + + L+     +  + +  ++  S ND + +  E + GS   F  +M+ KA  IG   
Sbjct: 113 DGTNIGLRSDMPISLHELLYGMMLVSGNDAAVSVAETVGGSYGGFIQMMNEKAVSIGATR 172

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF--SIRKFRYRN---RIITNHN 228
           + + N +GL DKN  TTA D A +      N P++ K     +   RYR+   R + N N
Sbjct: 173 SHFANPNGLTDKNHYTTAIDMAKISRYAMGN-PEFRKIVREKVYPMRYRSGVYRNVENRN 231

Query: 229 KLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           + L N     +GIKTG T  +G  +V S       ++A V
Sbjct: 232 EFLSNGYRGANGIKTGMTMAAGECLVASAERDGQLLIAAV 271


>gi|289806971|ref|ZP_06537600.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 177

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 72/128 (56%), Gaps = 6/128 (4%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 49  DEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 108

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +       +I +S ND   A  ++++GS++ F  LM+  AK++G+ NT ++   GL   
Sbjct: 109 VSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAP 168

Query: 186 NQITTARD 193
            Q +TARD
Sbjct: 169 GQFSTARD 176


>gi|218458342|ref|ZP_03498433.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli Kim 5]
          Length = 219

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 55/92 (59%)

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNI 237
           N +GL  K Q TTARD A+L + LR++FPQY  YFS+  F    + + N N L+ +    
Sbjct: 2   NPNGLPGKGQYTTARDLAVLTVALRRDFPQYASYFSLEGFTTGQQNVPNLNMLIGRFAGA 61

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           DG+KTG+   SGFN + S       +V+VV+G
Sbjct: 62  DGMKTGFICASGFNQIGSATRNGRTLVSVVLG 93


>gi|333026337|ref|ZP_08454401.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces sp.
           Tu6071]
 gi|332746189|gb|EGJ76630.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces sp.
           Tu6071]
          Length = 858

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 98/183 (53%), Gaps = 10/183 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA------ATQNPSKLYLKEKTYFTTEQG 131
           AS+ K+MT Y++      KK      I + + A      + QN S + ++     + ++ 
Sbjct: 532 ASVAKVMTAYLVLRDHPVKKGGDGASITMDQKAEDDAGLSAQNESTVDVRAGQKLSQKEA 591

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           I A++  SAN+++     + +GSEK F   M+  A ++GM+NT Y + SGL+ K  ++TA
Sbjct: 592 IEAIMLASANNIARQLARWDAGSEKDFVAKMNKAADELGMKNTTYTDPSGLN-KTTVSTA 650

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRN-RIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
            DQ  LG +  K+ P + +   +  +   N +  TN N+L+  M+N  GIKTG T  +G 
Sbjct: 651 EDQVKLGKVAMKD-PLFREVVRMPAYVDSNGKTQTNWNRLV-PMNNTVGIKTGTTTAAGG 708

Query: 251 NIV 253
           N++
Sbjct: 709 NLL 711


>gi|210612733|ref|ZP_03289448.1| hypothetical protein CLONEX_01650 [Clostridium nexile DSM 1787]
 gi|210151426|gb|EEA82434.1| hypothetical protein CLONEX_01650 [Clostridium nexile DSM 1787]
          Length = 324

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 115/246 (46%), Gaps = 32/246 (13%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           +AS LHA   +    +D  K  ++    D   +PAS TK++TLY+  +Y       L+ +
Sbjct: 68  VASSLHAAALFG---VDQKKVFLSEHMHDR-LFPASTTKILTLYLALKYGT-----LSDE 118

Query: 104 IPVSKTAAT--QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
           + VSK A +   + S   L+E    T E  +  L+  S ND + A  E ISGS   F  L
Sbjct: 119 VTVSKNAVSVPSDSSVAGLREGEQLTLEDLVYGLMLPSGNDSAVAIAEHISGSVDAFVQL 178

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL---GILLRK-----NFPQYYKYF- 212
           M+ +A  +G  N+ + N  G HDK+  TTA D  ++   GI   K     + P Y     
Sbjct: 179 MNQEANALGATNSHFVNPHGYHDKDHYTTAYDLYLIFNQGIQNEKFVDIISSPSYTTDIK 238

Query: 213 ----SIRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD----PI 263
               S+R   +R + +  N  +   +   + G KTG T  +G  +V    Y+ D    P 
Sbjct: 239 EPDGSVRSVTWRQSNLFVNGTRTAPENVTVVGGKTGTTDEAGACLVL---YEQDSQSRPY 295

Query: 264 VAVVMG 269
           ++VVMG
Sbjct: 296 ISVVMG 301


>gi|325690106|gb|EGD32110.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK115]
          Length = 455

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 143/304 (47%), Gaps = 55/304 (18%)

Query: 24  IQRNIQLMGKILFLSII---------MISMASELHA--------KPKYSSIVIDVNKNQM 66
           +++ + L+G I+FL+ +         ++ MA +++         +PK SS+V+D +   +
Sbjct: 5   VKKKLLLLG-IVFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPK-SSLVMDGSTGDV 62

Query: 67  TGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY------ 119
                 DE R PAS++K+MTLY++FE ++  K+   T I  + T   Q  + +Y      
Sbjct: 63  VWEDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVI--TATPQDQATANIYEISNNK 120

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKN 178
           +     +T  + I   I  S+N  +     ++S ++   F   M+ KA+++GM NT + N
Sbjct: 121 IVAGVDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFN 180

Query: 179 ASGL-------------HDK---NQITTARDQAILGILLRKNFPQYYKYFSIRKFR---- 218
           ASG              +D    NQ TTARD AIL      + P+   Y +  K      
Sbjct: 181 ASGAAAISFKGYYNPQNYDNTLSNQ-TTARDLAILAYNFVNHHPEILNYTNKAKVTVKAG 239

Query: 219 --YRNRIITNHNKLLNK---MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
             Y     T +  L      +  +DG+KTG + N  FN + +++  D  ++AV+MG+   
Sbjct: 240 TPYEETFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDW 299

Query: 274 QERD 277
            ++D
Sbjct: 300 SDQD 303


>gi|302519918|ref|ZP_07272260.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB78]
 gi|302428813|gb|EFL00629.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB78]
          Length = 939

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 98/183 (53%), Gaps = 10/183 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA------ATQNPSKLYLKEKTYFTTEQG 131
           AS+ K+MT Y++      KK      I + + A      + QN S + ++     + ++ 
Sbjct: 613 ASVAKVMTAYLVLRDHPVKKGGDGASITMDQKAEDDAGLSAQNESTVDVRAGQKLSQKEA 672

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           I A++  SAN+++     + +GSEK F   M+  A ++GM+NT Y + SGL+ K  ++TA
Sbjct: 673 IEAIMLASANNIARQLARWDAGSEKDFVAKMNKAADELGMKNTTYTDPSGLN-KTTVSTA 731

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRN-RIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
            DQ  LG +  K+ P + +   +  +   N +  TN N+L+  M+N  GIKTG T  +G 
Sbjct: 732 EDQVKLGKVAMKD-PLFREVVRMPAYVDSNGKTQTNWNRLV-PMNNTVGIKTGTTTAAGG 789

Query: 251 NIV 253
           N++
Sbjct: 790 NLL 792


>gi|229547447|ref|ZP_04436172.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis TX1322]
 gi|256854799|ref|ZP_05560163.1| DD-carboxypeptidase [Enterococcus faecalis T8]
 gi|229307479|gb|EEN73466.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis TX1322]
 gi|256710359|gb|EEU25403.1| DD-carboxypeptidase [Enterococcus faecalis T8]
 gi|315028349|gb|EFT40281.1| beta-lactamase [Enterococcus faecalis TX4000]
          Length = 493

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 131/277 (47%), Gaps = 41/277 (14%)

Query: 37  LSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
           ++ I   M + L A   PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE +
Sbjct: 42  ITAIAKKMGTTLKADGIPK-AAIVVDADSGEILWSQQPDSAWNPASIAKVMTMYLAFEAM 100

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AF 147
           +  K  ++T   V+ T    + SK+Y       T       + +L +I   +++V+T   
Sbjct: 101 EQGKFTMDTT--VTATQKDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLML 158

Query: 148 GEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLH---------------DKNQITTA 191
              ISG++   F  LM+ KA ++GM NT Y N SG                 + + ++TA
Sbjct: 159 ANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTA 218

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGI 240
           RD A L     KN+P+  +     K   +  + T + +     +            +DG+
Sbjct: 219 RDLASLTYHFLKNYPEILEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGL 276

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           KTG +   GFN + +++  D  ++ V++G+   Q +D
Sbjct: 277 KTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQD 313


>gi|291484748|dbj|BAI85823.1| penicillin-binding protein 5* [Bacillus subtilis subsp. natto
           BEST195]
          Length = 382

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 119/251 (47%), Gaps = 21/251 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDE--PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S+I+ID    ++  + +DE   R  AS+TK+MT  +  E   S K+  +  + VS  A  
Sbjct: 35  SAIIIDGASGRVL-YAKDEHQKRRIASITKIMTAVLAIE---SGKM--DQTVTVSANAVR 88

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S +YL E      +  +  L+ RS ND + A  E + GS   F  +M+ KA+++GM+
Sbjct: 89  TEGSAIYLTEGQKVKLKDLVYGLMLRSGNDAAVAIAEHVGGSLDGFVYMMNQKAEQLGMK 148

Query: 173 NTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR--NRIITNHNK 229
           NT ++N  GL D +N  +TA D AIL     K    Y K    + ++      +  N NK
Sbjct: 149 NTRFQNPHGLDDHENHYSTAYDMAILTKYAMK-LKDYQKISGTKIYKAETMESVWKNKNK 207

Query: 230 LLNKMHNID-GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           LL  ++    G KTGYT+ +   +V++       ++AV +  P   +   K    +    
Sbjct: 208 LLTMLYPYSTGGKTGYTKLAKRTLVSTASKDGIDLIAVTINDPNDWDDHMKMFNYV---- 263

Query: 289 EKKTLKHQQTH 299
                +H QT+
Sbjct: 264 ----FEHYQTY 270


>gi|169827289|ref|YP_001697447.1| D-alanyl-D-alanine carboxypeptidase [Lysinibacillus sphaericus
           C3-41]
 gi|168991777|gb|ACA39317.1| Penicillin-binding protein 5* precursor (D-alanyl-D-alanine
           carboxypeptidase) [Lysinibacillus sphaericus C3-41]
          Length = 348

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 121/259 (46%), Gaps = 31/259 (11%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEY 92
           +L + ++M+ +     A+      V+D    ++        R P ASLTK+ T  +  E 
Sbjct: 1   MLMIIVLMVILPQSSFARGGSGYAVLDGETGRVLIGSNSNERLPIASLTKIWTALVAIE- 59

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
                  L  ++ +S  AA    S +YL+     T E  +  L+ RS ND +TA  E + 
Sbjct: 60  ----NSDLQEEVVISPKAAMAEGSSIYLQAGETVTVETLLYGLMLRSGNDAATALAEHVG 115

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA-ILGILLR-KNFPQ--- 207
           GS + F  LM+ +A   G+ NT++ N SGLH +  +++ARD A +L + L+ K F +   
Sbjct: 116 GSVEGFVKLMNERAVIAGLTNTVFMNPSGLHHEEHLSSARDTAEMLRVALQNKTFEKIAS 175

Query: 208 --YYKYFSIRKFRYRN--RIITNHNKL-----------LNKMHNIDGI----KTGYTRNS 248
              YK  ++    + N  R++   + +           ++ + +  G+    KTG+T+ +
Sbjct: 176 TVLYKANTVNGMLWENKHRLLREGSGMAAEIDDETEQPVSSLKSATGVAYAGKTGFTKVA 235

Query: 249 GFNIVTSLRYKDDPIVAVV 267
           G  + T+ + KD     VV
Sbjct: 236 GRTLATAFQ-KDGQTCIVV 253


>gi|210621813|ref|ZP_03292842.1| hypothetical protein CLOHIR_00787 [Clostridium hiranonis DSM 13275]
 gi|210154577|gb|EEA85583.1| hypothetical protein CLOHIR_00787 [Clostridium hiranonis DSM 13275]
          Length = 420

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 158/336 (47%), Gaps = 40/336 (11%)

Query: 31  MGKILF-LSIIMISM---------ASELHAKPK---YS--SIVIDVNKNQMTGFKQDEPR 75
           MGKIL  L+ IM+++         A+E   KP    YS  SI++D    ++   K+ + +
Sbjct: 1   MGKILKKLTAIMLAVLFVIPATGYAAEAKKKPVVEIYSKNSILVDQKTGRVITSKEPDKQ 60

Query: 76  YP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
            P AS++K+MT Y+  + +++ ++  +  + + K     + S ++LKE       + +  
Sbjct: 61  VPLASISKVMTFYVAQDAIKNGEVKKDDLVTIDKKMLKVSGSTMHLKEGEKVKFNELLKG 120

Query: 135 LITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGL----------H 183
           L+  SAND + A    +  G    F   M+ KAK++GM+NT + N +GL           
Sbjct: 121 LMIVSANDGAVAIASHVCKGDVDAFVDRMNAKAKELGMKNTYFINPNGLPIYDWTKKDGD 180

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY---RNRIITNHNKLLNKMHNIDGI 240
            K   +TARD A +   L  ++ +     +  K  +   R+    N N LL+   N+DG+
Sbjct: 181 PKQNHSTARDIATMTKNLLDDYEEETIAITDCKLDHAPSRDCNYYNTNPLLHMHSNVDGL 240

Query: 241 KTGYTRNSGFNIVTSLRYK-------DDPIVAVVMGMPTSQERDQKA---LELITSFLEK 290
           KTGYT  +G+ +V + +         D+ ++ VVMG    ++R + A     L  +F  K
Sbjct: 241 KTGYTDLAGYCLVFTDKMNSDGKSDMDNRMIGVVMGNWCKEDRVRSANALYNLGENFETK 300

Query: 291 KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
              K  +T    N+ + S   ++ ++  +  Y   K
Sbjct: 301 LMCKKGETVATGNIDNISDLDNIDLQPKRDCYGVVK 336


>gi|16079376|ref|NP_390200.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310236|ref|ZP_03592083.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*)
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|221314560|ref|ZP_03596365.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*)
           [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221319482|ref|ZP_03600776.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*)
           [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221323758|ref|ZP_03605052.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*)
           [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321311791|ref|YP_004204078.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5]
 gi|461914|sp|P35150|DACB_BACSU RecName: Full=D-alanyl-D-alanine carboxypeptidase dacB;
           Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
           Full=Penicillin-binding protein 5*; Short=PBP-5*; Flags:
           Precursor
 gi|410134|gb|AAA67490.1| penicillin-binding protein [Bacillus subtilis subsp. subtilis str.
           168]
 gi|2634754|emb|CAB14251.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*)
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|320018065|gb|ADV93051.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5]
          Length = 382

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 118/251 (47%), Gaps = 21/251 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDE--PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S+I+ID    ++  + +DE   R  AS+TK+MT  +  E   S K+  +  + VS  A  
Sbjct: 35  SAIIIDGASGRVL-YAKDEHQKRRIASITKIMTAVLAIE---SGKM--DQTVTVSANAVR 88

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S +YL E      +  +  L+ RS ND + A  E + GS   F  +M+ KA+++GM+
Sbjct: 89  TEGSAIYLTEGQKVKLKDLVYGLMLRSGNDAAVAIAEHVGGSLDGFVYMMNQKAEQLGMK 148

Query: 173 NTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFS--IRKFRYRNRIITNHNK 229
           NT ++N  GL D +N  +TA D AIL     K    Y K     I K      +  N NK
Sbjct: 149 NTRFQNPHGLDDHENHYSTAYDMAILTKYAMK-LKDYQKISGTKIYKAETMESVWKNKNK 207

Query: 230 LLNKMHNID-GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           LL  ++    G KTGYT+ +   +V++       ++AV +  P   +   K    +    
Sbjct: 208 LLTMLYPYSTGGKTGYTKLAKRTLVSTASKDGIDLIAVTINDPNDWDDHMKMFNYV---- 263

Query: 289 EKKTLKHQQTH 299
                +H QT+
Sbjct: 264 ----FEHYQTY 270


>gi|315222027|ref|ZP_07863938.1| beta-lactamase [Streptococcus anginosus F0211]
 gi|315188993|gb|EFU22697.1| beta-lactamase [Streptococcus anginosus F0211]
          Length = 413

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 139/281 (49%), Gaps = 32/281 (11%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFE 91
           ++FL+  +++   E+ AK    +I +DV   ++  +++D  +P   AS+TK++T Y+++E
Sbjct: 13  LIFLAPTVLADNFEVGAK---HAIAVDVATGKIL-YEKDANQPVEIASITKLLTAYLVYE 68

Query: 92  YLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
            +   K  L T + +S      T NP  S + L+ + Y T E+ +   +  SAN  + A 
Sbjct: 69  AIHQGKFTLQTSVDISDYPYQLTVNPDASNVPLEARKY-TVEELLETSLIASANSPAIAL 127

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------------DKNQITTA 191
            E ++GSEKKF  LM  K ++ G+++    NASGL+                D+N++ +A
Sbjct: 128 AEKVAGSEKKFVDLMKAKLQQWGIKDATIVNASGLNNSVLGEEHIYPGSGKEDENKM-SA 186

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTGYTRN 247
            D AI+   L  ++P+  +        +    +T+ N +L  M      +DG KTG +  
Sbjct: 187 HDVAIIARRLILDYPEVLEITQKATSNFAGMTLTSSNHMLKNMPAFRAGVDGFKTGTSDK 246

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            G + V +++ +   ++ V++ +  + E +       + F+
Sbjct: 247 GGSSFVGTIQQRGMRLITVLLNVNHADEDENARFTATSRFM 287


>gi|307270557|ref|ZP_07551855.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
           TX4248]
 gi|306513138|gb|EFM81772.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
           TX4248]
          Length = 493

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 132/277 (47%), Gaps = 41/277 (14%)

Query: 37  LSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
           ++ I   M + L A   PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE +
Sbjct: 42  ITAIAKKMGTTLKADGIPK-AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAM 100

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AF 147
           +  K  ++T   V+ T    + SK+Y       T       + +L +I   +++V+T   
Sbjct: 101 EQGKFTMDTT--VTATQKDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLML 158

Query: 148 GEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLH---------------DKNQITTA 191
              ISG++   F  LM+ KA ++GM NT Y N SG                 + + ++TA
Sbjct: 159 ANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTA 218

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGI 240
           RD A L     KN+P+  +     K   +  + T + +     +            +DG+
Sbjct: 219 RDLASLTYHFLKNYPEILEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGL 276

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           KTG +   GFN + +++ +D  ++ V++G+   Q +D
Sbjct: 277 KTGSSPTGGFNYIATVKQEDFRLIEVILGVGNWQNQD 313


>gi|210614029|ref|ZP_03290008.1| hypothetical protein CLONEX_02221 [Clostridium nexile DSM 1787]
 gi|210150881|gb|EEA81889.1| hypothetical protein CLONEX_02221 [Clostridium nexile DSM 1787]
          Length = 325

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 107/224 (47%), Gaps = 21/224 (9%)

Query: 46  SELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            +LH+    + IVI ++ +++   F+QDE  +PASLTK+MT  +  E + + +  +  + 
Sbjct: 68  DQLHSS---AGIVISLDDSKVIFQFQQDEKIFPASLTKIMTCILAIENINNLEATITLEP 124

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
            +      QN S               +   I  S  + S A  E+++GSE+ F  LM+ 
Sbjct: 125 EIFDELYAQNASMAGFLPGENAKIIDILYGNILPSGGECSIALAEYVAGSEQAFVELMNE 184

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR--------KNFPQYYKYF---- 212
           KAK +GM NT + NA+GLH+++  TT +D   +GILL+         +  Q   YF    
Sbjct: 185 KAKDLGMNNTHFMNATGLHNESHYTTVKD---IGILLQYALKNQTFNDIFQSKSYFVAPT 241

Query: 213 --SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
              +  F + + +    ++       I G KTGYT  +G  + +
Sbjct: 242 DQHLSGFTFYSSMFKLRDQWELDEGEIVGGKTGYTDEAGLCLAS 285


>gi|288554201|ref|YP_003426136.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudofirmus OF4]
 gi|288545361|gb|ADC49244.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudofirmus OF4]
          Length = 547

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 106/223 (47%), Gaps = 30/223 (13%)

Query: 56  SIVIDVNKNQMTGFKQDEPR---------YPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
           SI I  +   +    QD P          YPAS  K+MT  +  E     K +L+ ++ V
Sbjct: 119 SIPIGAHAGAVLESGQDRPSFTKNANAALYPASTVKVMTALLAIE-----KGNLSDRVVV 173

Query: 107 SKTAATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
              AAT   + SK  ++     T EQ +  L+  S ND + A  E I GS  +F  +M+ 
Sbjct: 174 GPGAATVPFDSSKAGVRPGDVMTLEQLLHGLMLPSGNDAAVAIAEHIGGSHWQFVQMMNQ 233

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNR 222
           +A+++G  NT + NA G    +Q TT  D A +G    K+ P++ K  S   +   YRNR
Sbjct: 234 RARELGATNTTFMNAHGYDHPSQKTTVSDLAKIGAEASKH-PEFLKLISTPTYATTYRNR 292

Query: 223 -------IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVT 254
                  +  N N++L+    +  +I G KTGYT  S  N+++
Sbjct: 293 AGSPVHKVWRNTNQMLHNQAYRHSSIIGGKTGYTSVSRHNLIS 335


>gi|22536332|ref|NP_687183.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
           agalactiae 2603V/R]
 gi|76787943|ref|YP_328878.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae A909]
 gi|22533156|gb|AAM99055.1|AE014198_3 D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
           agalactiae 2603V/R]
 gi|76563000|gb|ABA45584.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae A909]
          Length = 411

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 127/247 (51%), Gaps = 28/247 (11%)

Query: 29  QLMGKILFLSII--MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMT 85
           +++  IL LS I  M ++++E        ++ +D++  ++   K  ++P   ASLTK+MT
Sbjct: 3   KIITSILLLSCIFFMPTISAESFNASAKHALAVDLDSGKILYEKDANKPAAIASLTKIMT 62

Query: 86  LYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           +Y++++ + +  L  NT++ +S    +     + S + L EK  +T +Q + A +  SAN
Sbjct: 63  VYMVYKEIDNGNLKWNTKVNISDYPYQLTRESDASNVPL-EKRRYTVKQLVDAAMISSAN 121

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL---------------HDKN 186
             + A  E ISG+E KF   M+ + +K G+ ++   NASGL               +D+N
Sbjct: 122 SAAIALAEHISGTESKFVDKMTAQLEKWGIHDSHLVNASGLNNSMLGNHIYPKSSQNDEN 181

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKT 242
           ++ +ARD AI+   L   +P   K  S    ++   I+ ++N +L  M      I G+KT
Sbjct: 182 KM-SARDIAIVAYHLVNEYPSILKITSKSVAKFDKDIMHSYNYMLPDMPVFRPGITGLKT 240

Query: 243 GYTRNSG 249
           G T  +G
Sbjct: 241 GTTELAG 247


>gi|142820|gb|AAA22377.1| penicillin-binding protein 5 [Bacillus subtilis]
          Length = 382

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 122/256 (47%), Gaps = 31/256 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDE--PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S+I+ID    ++  + +DE   R  AS+TK+MT  +  E   S K+  +  + VS  A  
Sbjct: 35  SAIIIDGASGRVL-YAKDEHQKRRIASITKIMTAVLAIE---SGKM--DQTVTVSANAVR 88

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S +YL E      +  +  L+ RS ND + A  E + GS   F  +M+ KA+++GM+
Sbjct: 89  TEGSAIYLTEGQKVKLKDLVYGLMLRSGNDAAVAIAEHVGGSLDGFVYMMNQKAEQLGMK 148

Query: 173 NTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-------RII 224
           NT ++N  GL D +N  +TA D AIL       +    +  S + FR++N        + 
Sbjct: 149 NTRFQNPHGLDDHENHYSTAYDMAIL-----TKYAIEAERLS-KDFRHKNIQAETMESVW 202

Query: 225 TNHNKLLNKMHNID-GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            N NKLL  ++    G KTGYT+ +   +V++       ++AV +  P   +   K    
Sbjct: 203 KNKNKLLTMLYPYSTGGKTGYTKLAKRTLVSTASKDGIDLIAVTINDPNDWDDHMKMFNY 262

Query: 284 ITSFLEKKTLKHQQTH 299
           +         +H QT+
Sbjct: 263 V--------FEHYQTY 270


>gi|77411808|ref|ZP_00788143.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
           agalactiae CJB111]
 gi|77162143|gb|EAO73119.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
           agalactiae CJB111]
          Length = 411

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 127/247 (51%), Gaps = 28/247 (11%)

Query: 29  QLMGKILFLSII--MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMT 85
           +++  IL LS I  M ++++E        ++ +D++  ++   K  ++P   ASLTK+MT
Sbjct: 3   KIITSILLLSCIFFMPTISAESFNASAKHALAVDLDSGKILYEKDANKPAAIASLTKIMT 62

Query: 86  LYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           +Y++++ + +  L  NT++ +S    +     + S + L EK  +T +Q + A +  SAN
Sbjct: 63  VYMVYKEIDNGNLKWNTKVNISDYPYQLTRESDASNVPL-EKRRYTVKQLVDAAMISSAN 121

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL---------------HDKN 186
             + A  E ISG+E KF   M+ + +K G+ ++   NASGL               +D+N
Sbjct: 122 SAAIALAEHISGTESKFVDKMTAQLEKWGIHDSHLVNASGLNNSMLGNHIYPKSSQNDEN 181

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKT 242
           ++ +ARD AI+   L   +P   K  S    ++   I+ ++N +L  M      I G+KT
Sbjct: 182 KM-SARDIAIVAYHLVNEYPSILKITSKSVAKFDKDIMHSYNYMLPDMPVFRPGITGLKT 240

Query: 243 GYTRNSG 249
           G T  +G
Sbjct: 241 GTTELAG 247


>gi|229091482|ref|ZP_04222692.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-42]
 gi|228691856|gb|EEL45603.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-42]
          Length = 221

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 118/219 (53%), Gaps = 33/219 (15%)

Query: 35  LFLSIIMISMAS--------ELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMT 85
           LF SI +IS ++        E+ A    S+I+++ N  ++   K  DE    AS+TKMM+
Sbjct: 4   LFCSIAVISGSASAETVSAIEVEAG---SAILVEANSGKILYEKNADESLAIASMTKMMS 60

Query: 86  LYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
            Y++ E +++ KL  N ++ +S    K +  ++ S + L+    +T ++   A++  SAN
Sbjct: 61  EYLVHEAVENGKLKWNQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYEAMVIYSAN 120

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--HD-------------KN 186
             + A  E I+G E  F  +M++K+K+ GM+N  + N++GL  HD             KN
Sbjct: 121 GATIALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPEGTTPDEKN 180

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
           ++ +ARD AIL   L ++FP+      I K ++ NR+++
Sbjct: 181 KM-SARDCAILAQRLIQDFPEMLDTAKIPK-KHSNRVVS 217


>gi|187779942|ref|ZP_02996415.1| hypothetical protein CLOSPO_03538 [Clostridium sporogenes ATCC
           15579]
 gi|187773567|gb|EDU37369.1| hypothetical protein CLOSPO_03538 [Clostridium sporogenes ATCC
           15579]
          Length = 424

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 108/226 (47%), Gaps = 18/226 (7%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++ IDV   ++   K  D+  YPAS TK +T  ++ E         N  IP + TA +Q
Sbjct: 39  TAMTIDVETGEIIYAKNIDKRMYPASTTKYLTALLLAE-----NKGKNDNIPYTATAKSQ 93

Query: 114 NPSKLYLKEKTY-----FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P  + +             E  +  L+  S ND +   G+ ++G+ K F  +M+ K ++
Sbjct: 94  PPYSMNINLHPINIGETIKAENVMDGLLLFSGNDTAYMIGDALAGNSKNFENMMNKKIQE 153

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRI 223
           + ++NT +   +GLH+ N  TTA D +I+     KN P  Y     K  SI   +     
Sbjct: 154 LNLKNTHFVTPNGLHNPNHYTTAYDLSIISRAALKN-PWVYQSSNKKESSIVTSKGTKMT 212

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           + N NKLL K   + G KTGYT  +G  +VT     D  I+ VVMG
Sbjct: 213 VENSNKLLGKDGCVAG-KTGYTDAAGRCLVTLFNRDDRKILGVVMG 257


>gi|308069547|ref|YP_003871152.1| Penicillin-binding protein 5* precursor (D-alanyl-D-alanine
           carboxypeptidase) [Paenibacillus polymyxa E681]
 gi|305858826|gb|ADM70614.1| Penicillin-binding protein 5* precursor (D-alanyl-D-alanine
           carboxypeptidase) [Paenibacillus polymyxa E681]
          Length = 420

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 98/196 (50%), Gaps = 13/196 (6%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT  +  E+ +     L  ++ VS TA  +  S L+L+     + E  +  L+ 
Sbjct: 87  ASLTKIMTAIVAIEHGR-----LQDRVKVSPTAYAKEGSSLFLQMGEQMSLENMLYGLML 141

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           RS ND ++A  E + G+E+ F  LM++KA ++G+ +T + N  GL  +   ++A D A L
Sbjct: 142 RSGNDAASAIAEHVGGTEEGFVHLMNDKAVQLGLSHTHFANPHGLDAEGHYSSANDMARL 201

Query: 198 GILLRKNFPQYYKYF--SIRKFRYRNRIIT----NHNKLLNKMHNIDGIKTGYTRNSGFN 251
                 N P + +     ++K    N        N NK+L      DG+KTG+T+ + F 
Sbjct: 202 TAYALHN-PTFARIVKTELKKAPNPNDSWDYSWHNKNKMLRLYEGADGVKTGFTKKA-FR 259

Query: 252 IVTSLRYKDDPIVAVV 267
            + S   +D   +A V
Sbjct: 260 CLVSSATRDGRQLAAV 275


>gi|228991455|ref|ZP_04151407.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
           12442]
 gi|228768257|gb|EEM16868.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
           12442]
          Length = 329

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 118/226 (52%), Gaps = 12/226 (5%)

Query: 55  SSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+ID    ++   K +D P   ASL+KMMT YI+ E +Q  K+  + ++ +S ++   
Sbjct: 30  SAILIDATSEEIVYKKNEDTPFSSASLSKMMTEYIVLEQIQKGKIKWDDRVKISNSSIQM 89

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             + + +  +   T      A++  S N  +    E IS SE+ F  LM+ KA ++G+ N
Sbjct: 90  EGNNIDITFEDQITIRDLFHAMVLASDNSAAVFLAEHISKSEQDFTNLMNEKATQLGLSN 149

Query: 174 -TIYKNASGLHDKNQIT--TARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIITNHN 228
            T + NA+G+ +K + +  TA D + L   L  ++P   +   +   +F +++  + N N
Sbjct: 150 KTYFANATGVINKQKESKITALDASKLAQHLITDYPMILEITQLTSYQFTFKDIHVFNTN 209

Query: 229 KLLN------KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           K+L       K   +DG++T ++  +G++  ++ +  +   +++VM
Sbjct: 210 KMLYSLDSKIKFKGVDGLQTSFSNPAGYSFASTAKQGNKRFISIVM 255


>gi|160882047|ref|YP_001561015.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           phytofermentans ISDg]
 gi|160430713|gb|ABX44276.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           phytofermentans ISDg]
          Length = 516

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 122/257 (47%), Gaps = 30/257 (11%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGI 132
           YPAS+TK++T  +  E       +LN  + +S  A      N S++ L E    + +  +
Sbjct: 82  YPASITKILTTLLAIE-----NCNLNETMTMSHAAEWDVDFNSSRIGLVEGESLSLKDAL 136

Query: 133 LALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
            A++  SAN+VS   GE ++ GS   F  +M+ +AK++G  N+ + N +GLHD N  T A
Sbjct: 137 YAVMLESANEVSFGVGEHVAKGSMTDFTAMMNARAKELGCVNSNFVNPNGLHDDNHYTCA 196

Query: 192 RDQAIL---GILLRKNFPQYYKYFSIRKF------RYRNRIITNHNKLLNKMHNIDGI-- 240
            D A++    I+L    P++      R +      +   R + NH++ + K  N DG   
Sbjct: 197 YDMALISRAAIML----PEFRTITGTRTYTIPATNKNVARPLANHHRFIRKTSNYDGAIG 252

Query: 241 -KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT---SQERDQKALELITSFLEKKTLKHQ 296
            KTG T  +   +VT        ++AVV+ + T   + E   K L+   +F      + +
Sbjct: 253 GKTGGTTEAKTTLVTYAERNGLTLIAVVLHVDTGLHAYEDTAKILDF--AFDNYALYRIE 310

Query: 297 QTHRKDNLSSTSLKKSL 313
            T   +N + TSL K  
Sbjct: 311 DTEGVNNSAFTSLFKDF 327


>gi|227517264|ref|ZP_03947313.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis TX0104]
 gi|227075271|gb|EEI13234.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis TX0104]
          Length = 493

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 139/299 (46%), Gaps = 43/299 (14%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQD 72
           L   YG+ + Q  +    + +  + I   M + L A   PK ++IV+D +  ++   +Q 
Sbjct: 22  LVVSYGAFFAQPTVTHAEEDI--TAIAKKMGTTLKADGIPK-AAIVVDADSGEILWSQQP 78

Query: 73  EPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE-- 129
           +  + PAS+ K+MT+Y+ FE ++  K  ++T   V+ T    + SK+Y       T    
Sbjct: 79  DLAWNPASIAKVMTMYLAFEAMEQGKFTMDTT--VTATQKDVDISKIYAISNNKITLGVA 136

Query: 130 ---QGILALITRSANDVST-AFGEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLH- 183
              + +L +I   +++V+T      ISG++   F  LM+ KA ++GM NT Y N SG   
Sbjct: 137 YPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQA 196

Query: 184 --------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
                         + + ++TARD A L     KN+P+  +     K   +  + T + +
Sbjct: 197 SAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEI--TNKPVVKTMVGTPYEE 254

Query: 230 LLNKMH-----------NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
                +            +DG+KTG +   GFN + +++  D  ++ V++G+   Q +D
Sbjct: 255 TFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQD 313


>gi|296449308|ref|ZP_06891091.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           difficile NAP08]
 gi|296880760|ref|ZP_06904710.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           difficile NAP07]
 gi|296261835|gb|EFH08647.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           difficile NAP08]
 gi|296428255|gb|EFH14152.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           difficile NAP07]
          Length = 414

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 20/225 (8%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE    ASL+KMMT  +  E +   ++     + + K+ A+   S   LK+    +  + 
Sbjct: 59  DEKMPLASLSKMMTFLLAIEAIDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGEL 118

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL-------HD 184
           +  L+  S ND + A  + I  +EK F  +M+ KA++IGM +T Y N +GL       H 
Sbjct: 119 MQGLMLVSGNDAALAIAKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHK 178

Query: 185 K---NQITTARDQAILGILLRKNFP-QYYKYFSIRKFRYRNRIIT--NHNKLLNKMHNID 238
           +     I+TA D   LG  +  ++  Q  +  +++ +    +  T  N N LL  +  +D
Sbjct: 179 EPPIENISTAHDIVTLGKYMYDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVD 238

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDP-------IVAVVMGMPTSQER 276
           GIKTGYT N+G+ +  S+    D        ++ VV+G    + R
Sbjct: 239 GIKTGYTDNAGYCLAFSMMIPKDAKNERNHRLIGVVLGDGNKKNR 283


>gi|255654539|ref|ZP_05399948.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-23m63]
          Length = 409

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 20/225 (8%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE    ASL+KMMT  +  E +   ++     + + K+ A+   S   LK+    +  + 
Sbjct: 54  DEKMPLASLSKMMTFLLAIEAIDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGEL 113

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL-------HD 184
           +  L+  S ND + A  + I  +EK F  +M+ KA++IGM +T Y N +GL       H 
Sbjct: 114 MQGLMLVSGNDAALAIAKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHK 173

Query: 185 K---NQITTARDQAILGILLRKNFP-QYYKYFSIRKFRYRNRIIT--NHNKLLNKMHNID 238
           +     I+TA D   LG  +  ++  Q  +  +++ +    +  T  N N LL  +  +D
Sbjct: 174 EPPIENISTAHDIVTLGKYMYDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVD 233

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDP-------IVAVVMGMPTSQER 276
           GIKTGYT N+G+ +  S+    D        ++ VV+G    + R
Sbjct: 234 GIKTGYTDNAGYCLAFSMMIPKDAKNERNHRLIGVVLGDGNKKNR 278


>gi|30262550|ref|NP_844927.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Ames]
 gi|47527848|ref|YP_019197.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|165869045|ref|ZP_02213705.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0488]
 gi|167632709|ref|ZP_02391036.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0442]
 gi|167637949|ref|ZP_02396228.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0193]
 gi|170685562|ref|ZP_02876786.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0465]
 gi|170704398|ref|ZP_02894864.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0389]
 gi|177649431|ref|ZP_02932433.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0174]
 gi|190565326|ref|ZP_03018246.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis Tsiankovskii-I]
 gi|196036722|ref|ZP_03104114.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           W]
 gi|227814631|ref|YP_002814640.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. CDC 684]
 gi|228927615|ref|ZP_04090667.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228946196|ref|ZP_04108529.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229122097|ref|ZP_04251313.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
 gi|229603255|ref|YP_002866873.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0248]
 gi|254685126|ref|ZP_05148986.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254722535|ref|ZP_05184323.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A1055]
 gi|254737577|ref|ZP_05195280.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254743240|ref|ZP_05200925.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Kruger B]
 gi|254751892|ref|ZP_05203929.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Vollum]
 gi|254760412|ref|ZP_05212436.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Australia 94]
 gi|30257182|gb|AAP26413.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
           Ames]
 gi|47502996|gb|AAT31672.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|164715771|gb|EDR21288.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0488]
 gi|167514498|gb|EDR89865.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0193]
 gi|167533007|gb|EDR95643.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0442]
 gi|170130199|gb|EDS99060.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0389]
 gi|170670922|gb|EDT21661.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0465]
 gi|172084505|gb|EDT69563.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0174]
 gi|190563353|gb|EDV17318.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis Tsiankovskii-I]
 gi|195990686|gb|EDX54662.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           W]
 gi|227004352|gb|ACP14095.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
           CDC 684]
 gi|228661440|gb|EEL17064.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
 gi|228813487|gb|EEM59775.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228832095|gb|EEM77680.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229267663|gb|ACQ49300.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0248]
          Length = 338

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 122/229 (53%), Gaps = 17/229 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S+I+ID N  ++   K +E     A+L+K+MT YI+ E L    + L+  + +S     A
Sbjct: 37  SAILIDANSGEVVYKKNEENSIQSATLSKLMTEYIVLEQLDKGNIQLDEVVKISNEVFRA 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             +P ++  K+KT  T    + AL+    N  + A  E I+G+E  F  LM+ KAK++ +
Sbjct: 97  ETSPIQVTSKDKT--TVRDLLHALLLTGNNRSTLALAEHIAGNEDNFTQLMNEKAKQLKL 154

Query: 172 -QNTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIIT 225
            Q + + NA+G++   +K   TTA +   L   L  +FP       +   +F +++  + 
Sbjct: 155 SQPSPFLNATGMNNGTNKLSTTTAIEVGKLATRLVTDFPDVLNVTKLTSYQFTFKDTKVF 214

Query: 226 NHNKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N NK+   LN   K+  +DG++T ++ NS ++ V++ +  D  +++V++
Sbjct: 215 NTNKMIYSLNKNIKLQGVDGLQTSFSTNSNYSFVSTAKRGDTRLISVIL 263


>gi|227876929|ref|ZP_03995025.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus crispatus
           JV-V01]
 gi|256850179|ref|ZP_05555609.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus
           MV-1A-US]
 gi|227863486|gb|EEJ70909.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus crispatus
           JV-V01]
 gi|256713151|gb|EEU28142.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus
           MV-1A-US]
          Length = 433

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 32/252 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKT 109
           S+I ID +  Q+   K      P AS+TK++T+Y+  + +++ KL  + ++    P+ K 
Sbjct: 51  SAIAIDSDSGQILYAKNATKTLPIASMTKLVTVYLTLQAIKNHKLSWDQKVKPTAPIVKV 110

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A     S + LK    +T  Q   A +  SAN  +   G+ I+GS+K F   M  + KK 
Sbjct: 111 ANNAEYSNVPLKLGHSYTIRQLYQATLIESANGAAMLLGQTIAGSQKAFVDQMRAQVKKW 170

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++T    A GL + N                 +A+D AI+G  L K+FP+      + 
Sbjct: 171 GIEDTKIYTACGLPNGNVGKDAYPGVNKNAENSMSAKDMAIVGQNLIKDFPEVLDTTKLA 230

Query: 216 KFRYRNRI----ITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              +++      + N N +L      +  + +DG+KTG T  +G   + ++++    ++ 
Sbjct: 231 HLDFKDAGHATKMANFNWMLKGLSQYDPAYPVDGLKTGTTDAAGACFIGTVQHNGARLIT 290

Query: 266 VVMGMPTSQERD 277
           VVMG   ++ RD
Sbjct: 291 VVMG---ARHRD 299


>gi|309775554|ref|ZP_07670554.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308916648|gb|EFP62388.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 337

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 23/207 (11%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
           +D+ +  AS++K+MT  I  E+ +     L+    V +       S +YLK+    T   
Sbjct: 49  KDDKQSVASISKIMTAVIAIEHGK-----LDEAFTVDEEINKAYGSSVYLKQGQTVTLRD 103

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--HDKNQI 188
            + AL+ RS ND +    + +SGS++ F   M+ KA +IGM NT + N SGL   D   I
Sbjct: 104 LLYALMLRSGNDAAVEIAKHVSGSQEAFVEAMNQKAAEIGMSNTTFSNPSGLDEEDGGNI 163

Query: 189 TTARDQAILGILLRKN-------FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIK 241
           +TA D AIL     KN         +YY   +    R++N+     N+LL       G K
Sbjct: 164 STANDMAILMSYAMKNKEFRTITGSKYYT--TDWNMRWKNK-----NRLLFDYPFTIGGK 216

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           TG+T+ +G  +VT+  +  D + ++V+
Sbjct: 217 TGFTKKAGRTLVTAAEH--DGVESIVV 241


>gi|329116007|ref|ZP_08244724.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parauberis
           NCFD 2020]
 gi|326906412|gb|EGE53326.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parauberis
           NCFD 2020]
          Length = 391

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 139/295 (47%), Gaps = 39/295 (13%)

Query: 50  AKPKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A    SSIV++  N + +     D  R PAS++K+ TLY++FE +++ KL L+  I  S+
Sbjct: 43  ADKPVSSIVVNAKNGDIIWQDNIDASRDPASMSKLFTLYLLFEDIKAGKLSLSDHIRASQ 102

Query: 109 TAATQNPSKLYL--KEKTYFTTEQGILALITRSA----NDVSTAFGEFISGSEK-KFAIL 161
           T   Q+ S++Y     K     +  I  LIT +A    N  +     ++S ++   F   
Sbjct: 103 T--DQDISQIYAISNNKIVAGVDYPIRDLITMTAVPSSNAATLMLANYMSDNDAGAFINR 160

Query: 162 MSNKAKKIGMQNTIYKNASGL-------------HDKNQI--TTARDQAILGILLRKNFP 206
           ++  A+K+GM+NT + NASG              +D NQ   T+ARD AIL     KN+P
Sbjct: 161 INVTAQKLGMKNTFFTNASGAVASAFEGHYSPEGYDSNQPNKTSARDLAILCYHFLKNYP 220

Query: 207 QYYKYFSIRKFRYRNRI-----ITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLR 257
           +  ++      +  +R        ++N  L      +  +DG+KTG + ++ FN V + +
Sbjct: 221 EILEFTCKSSVKTMDRTPYEEEFHSYNYSLPGDKFGIKGVDGLKTGSSPSAAFNAVITAK 280

Query: 258 YKDDPIVAVVMGMPTSQERD-----QKALELITSFLEKKTLKHQQTHRKDNLSST 307
             D  ++++VMG+    +++        +  IT +       HQ  H    L+ T
Sbjct: 281 RDDTRLISIVMGVGDWSDQEGEFHRHPFINAITEYGFTNDALHQNNHPNIILADT 335


>gi|284047000|ref|YP_003397340.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Conexibacter
           woesei DSM 14684]
 gi|283951221|gb|ADB53965.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Conexibacter
           woesei DSM 14684]
          Length = 284

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 111/251 (44%), Gaps = 14/251 (5%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP---ASLTKMMTLYIIFEYLQSKKLHLNT 102
           ++L   P  ++IV D    ++     D P       S  K+MT  +  E     +  L  
Sbjct: 40  AQLKLPPHSAAIVADARTGRV--LYADRPHRRLLIGSTAKLMTALVALE-----RTSLED 92

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
                  A     S++ L           +  L+  S ND + A  E ++GS++ F  LM
Sbjct: 93  SFTAPAYAGDPTESRVGLGTDEQLLVGDLLRGLLVVSGNDAAIALAEGVAGSQEAFVELM 152

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSIR-KFRY 219
           + +A+++GM +T Y N  GL D    ++A D   L   LR++  F +     S+      
Sbjct: 153 NERAQELGMSDTRYGNPIGLDDGTS-SSAADLVTLTRELRRHDAFREIVASPSVTLSSGA 211

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
             R + N N LL     +DG+KTG+T+ +G+ +V S       +++ V+G  +  +RD+ 
Sbjct: 212 VARTLENTNDLLGGPLAVDGVKTGHTKAAGYVLVGSATRGGRAVISAVLGTRSEADRDRA 271

Query: 280 ALELITSFLEK 290
            + L+   L +
Sbjct: 272 TMTLLRHGLRR 282


>gi|218903688|ref|YP_002451522.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH820]
 gi|228915143|ref|ZP_04078740.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228933848|ref|ZP_04096693.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|218538327|gb|ACK90725.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH820]
 gi|228825804|gb|EEM71592.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228844572|gb|EEM89626.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 338

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 122/229 (53%), Gaps = 17/229 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S+I+ID N  ++   K +E     A+L+K+MT YI+ E L    + L+  + +S     A
Sbjct: 37  SAILIDANSGEVVYKKNEENSIQSATLSKLMTEYIVLEQLDKGNIQLDEVVKISNEVFRA 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             +P ++  K+KT  T    + AL+    N  + A  E I+G+E  F  LM+ KAK++ +
Sbjct: 97  ETSPIQVTSKDKT--TVRDLLHALLLTGNNRSTLALAEHIAGNEDNFTQLMNEKAKQLKL 154

Query: 172 -QNTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIIT 225
            Q + + NA+G++   +K   TTA +   L   L  +FP       +   +F +++  + 
Sbjct: 155 SQPSPFLNATGMNNGTNKLSTTTAIEVGKLATRLVTDFPDVLNVTKLTSYQFTFKDTKVF 214

Query: 226 NHNKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N NK+   LN   K+  +DG++T ++ NS ++ V++ +  D  +++V++
Sbjct: 215 NTNKMIYSLNKNIKLQGVDGLQTSFSTNSNYSFVSTAKRGDTRLISVIL 263


>gi|328958772|ref|YP_004376158.1| D-alanyl-D-alanine carboxypeptidase DacA [Carnobacterium sp. 17-4]
 gi|328675096|gb|AEB31142.1| D-alanyl-D-alanine carboxypeptidase DacA [Carnobacterium sp. 17-4]
          Length = 439

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 109/231 (47%), Gaps = 27/231 (11%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQN--PSKLYLKEKTYFT 127
           DE    AS+TKM+T YI+ E +++  L  + Q+ +S+ A   +QN   S + L+    ++
Sbjct: 61  DEKLGIASMTKMITEYILLETIKNGDLAWDDQVNISEYAHNISQNYELSNVPLRIDDTYS 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----- 182
            E+   A+   SAN  + A  E I+G EK F  +M  K +  G+ N    N +GL     
Sbjct: 121 VEELYQAMAIYSANGATIALAEHIAGDEKSFVDMMHEKVESWGITNYELYNTTGLSNSDL 180

Query: 183 ---------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHN 228
                     D     TAR+ +I+   L  +FP+  K  SI + ++R        + N N
Sbjct: 181 QGNIYPGSTEDSENSMTAREMSIVAQRLLVDFPEVLKTSSISEKKFREGTSDEISMQNFN 240

Query: 229 KLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
            +L  +     N+DG+KTG T  +G ++  +   +   ++ +VM     QE
Sbjct: 241 WMLPGLIYERENVDGLKTGTTDFAGASMTGTAEEEGMRVITIVMNATNGQE 291


>gi|289167763|ref|YP_003446032.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 3
           [Streptococcus mitis B6]
 gi|288907330|emb|CBJ22167.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 3
           [Streptococcus mitis B6]
          Length = 413

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 117/237 (49%), Gaps = 26/237 (10%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTA 110
           +I ++ N  ++   K+  +P   AS+TK++T+Y+++E L++  + L+T + +S    K  
Sbjct: 32  AIAVEANTGKILYEKEATQPVEIASITKLLTVYLVYEALENGSITLSTPVDISDYPYKLT 91

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S + ++ + Y T EQ + A +  SAN  + A  E I+GSEK F  +M  K  + G
Sbjct: 92  TNSEASNVPMEARNY-TVEQLLEATLVSSANSAAIALAEKIAGSEKDFVDMMRAKLLEWG 150

Query: 171 MQNTIYKNASGLH---------------DKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           +Q+    N +GL+               D+N++ +A D AI+   L K +PQ  +     
Sbjct: 151 IQDATVVNTTGLNNETLGDNIYPGSKKDDENKL-SAYDVAIVARNLIKKYPQVLEITKKP 209

Query: 216 KFRYRNRIITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              +    IT+ N +L  M       DG+KTG T  +G + V +   K   ++ VV+
Sbjct: 210 SSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKGMRVITVVL 266


>gi|154483906|ref|ZP_02026354.1| hypothetical protein EUBVEN_01611 [Eubacterium ventriosum ATCC
           27560]
 gi|149735397|gb|EDM51283.1| hypothetical protein EUBVEN_01611 [Eubacterium ventriosum ATCC
           27560]
          Length = 494

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 105/215 (48%), Gaps = 23/215 (10%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE 129
           K ++  YPAS+TK+MT  +  E  +  ++   +   +             + EK   T +
Sbjct: 74  KCNKKMYPASITKIMTALLTIENCKMDEMVTFSDATIHSIQYGDANMGCSVGEK--MTVK 131

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
             + AL+ +SAN+V+TA GE I+GS K FA +M+ +AK+ G  NT + NA+GLHD N   
Sbjct: 132 DCLYALMLQSANEVATALGEHIAGSTKNFAEMMNKRAKEAGALNTHFANANGLHDPNHYV 191

Query: 190 TARDQAILGILLRKNFPQYYKYF------SIRKFRYRNRIITNHNKL-LNKM-------- 234
           TA D A++     K     Y  F      +    ++ N+  T+   +  +KM        
Sbjct: 192 TAYDMAMITRAASK-----YSVFNDIVNTTTYTIKHNNKRKTDATAIQRHKMVWPTSGYY 246

Query: 235 -HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              I G KTG+T  SG  +VT  +     ++AVV+
Sbjct: 247 YDGIIGGKTGFTDQSGTTLVTYAKRNGMTLIAVVL 281


>gi|257091370|ref|ZP_05585731.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis CH188]
 gi|257417972|ref|ZP_05594966.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis T11]
 gi|257000182|gb|EEU86702.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis CH188]
 gi|257159800|gb|EEU89760.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis T11]
          Length = 475

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 131/277 (47%), Gaps = 41/277 (14%)

Query: 37  LSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
           ++ I   M + L A   PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE +
Sbjct: 24  ITAIAKKMGTTLKADGIPK-AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAM 82

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AF 147
           +  K  ++T   V+ T    + SK+Y       T       + +L +I   +++V+T   
Sbjct: 83  EQGKFTMDTT--VTATQKDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLML 140

Query: 148 GEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLH---------------DKNQITTA 191
              ISG++   F  LM+ KA ++GM NT Y N SG                 + + ++TA
Sbjct: 141 ANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTA 200

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGI 240
           RD A L     KN+P+  +     K   +  + T + +     +            +DG+
Sbjct: 201 RDLASLTYHFLKNYPEILEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGL 258

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           KTG +   GFN + +++  D  ++ V++G+   Q +D
Sbjct: 259 KTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQD 295


>gi|256962967|ref|ZP_05567138.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis
           HIP11704]
 gi|256953463|gb|EEU70095.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis
           HIP11704]
          Length = 475

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 131/277 (47%), Gaps = 41/277 (14%)

Query: 37  LSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
           ++ I   M + L A   PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE +
Sbjct: 24  ITAIAKKMGTTLKADGIPK-AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAM 82

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AF 147
           +  K  ++T   V+ T    + SK+Y       T       + +L +I   +++V+T   
Sbjct: 83  EQGKFTMDTT--VTATQKDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLML 140

Query: 148 GEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLH---------------DKNQITTA 191
              ISG++   F  LM+ KA ++GM NT Y N SG                 + + ++TA
Sbjct: 141 ANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTA 200

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGI 240
           RD A L     KN+P+  +     K   +  + T + +     +            +DG+
Sbjct: 201 RDLASLTYHFLKNYPEILEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGL 258

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           KTG +   GFN + +++  D  ++ V++G+   Q +D
Sbjct: 259 KTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQD 295


>gi|256960474|ref|ZP_05564645.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis Merz96]
 gi|256950970|gb|EEU67602.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis Merz96]
          Length = 475

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 131/277 (47%), Gaps = 41/277 (14%)

Query: 37  LSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
           ++ I   M + L A   PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE +
Sbjct: 24  ITAIAKKMGTTLKADGIPK-AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAM 82

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AF 147
           +  K  ++T   V+ T    + SK+Y       T       + +L +I   +++V+T   
Sbjct: 83  EQGKFTMDTT--VTATQKDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLML 140

Query: 148 GEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLH---------------DKNQITTA 191
              ISG++   F  LM+ KA ++GM NT Y N SG                 + + ++TA
Sbjct: 141 ANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTA 200

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGI 240
           RD A L     KN+P+  +     K   +  + T + +     +            +DG+
Sbjct: 201 RDLASLTYHFLKNYPEILEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGL 258

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           KTG +   GFN + +++  D  ++ V++G+   Q +D
Sbjct: 259 KTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQD 295


>gi|229826630|ref|ZP_04452699.1| hypothetical protein GCWU000182_02006 [Abiotrophia defectiva ATCC
           49176]
 gi|229789500|gb|EEP25614.1| hypothetical protein GCWU000182_02006 [Abiotrophia defectiva ATCC
           49176]
          Length = 478

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 137/284 (48%), Gaps = 37/284 (13%)

Query: 22  IYIQRNIQ--LMGKILFLSIIMIS--MASELHAKPKYSSI------VIDVNKNQMTGFKQ 71
           +YI+R+    LM  +LF S++ I+   A++    P+  SI      V+D+    +   K 
Sbjct: 20  LYIKRSFAFFLMIMVLF-SVLKINTVFAADSALWPECPSIKAKEAVVMDLATGTILVSKN 78

Query: 72  DEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFT 127
              + YPAS TK+MT  +  E+ +S    L+ ++  +K A   A +  S + +      T
Sbjct: 79  GNKKWYPASTTKIMTAMLAIEHAKS----LDEEVEFTKEAIDAADRGSSSIGITPGEKLT 134

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
             + +  L+  SAN+V+ A     +GS   FA +M+ KA ++G  NT ++N SGL++ + 
Sbjct: 135 LRECLYGLMLASANEVANALAIHTAGSIDAFADMMNEKAAELGCTNTHFRNPSGLYEDDH 194

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRY-------RNRIITNHNKLLNKMHNID-- 238
            TT  D A +     K    + +  S RK+           R ++N ++L N M   +  
Sbjct: 195 YTTPADLAKIARAAIK-IDAFKEIASTRKYVLPKTNLMKEKRPLSNTHQLFNPMQCPEHA 253

Query: 239 -----GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
                  KTGYTR + FN+V+ ++     +V V+M    ++ RD
Sbjct: 254 YEYCYAGKTGYTREAKFNLVSYVKKGAMDVVCVIM---NAESRD 294


>gi|256958405|ref|ZP_05562576.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis DS5]
 gi|257078283|ref|ZP_05572644.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis JH1]
 gi|256948901|gb|EEU65533.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis DS5]
 gi|256986313|gb|EEU73615.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis JH1]
          Length = 475

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 131/277 (47%), Gaps = 41/277 (14%)

Query: 37  LSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
           ++ I   M + L A   PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE +
Sbjct: 24  ITAIAKKMGTTLKADGIPK-AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAM 82

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AF 147
           +  K  ++T   V+ T    + SK+Y       T       + +L +I   +++V+T   
Sbjct: 83  EQGKFTMDTT--VTATQKDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLML 140

Query: 148 GEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLH---------------DKNQITTA 191
              ISG++   F  LM+ KA ++GM NT Y N SG                 + + ++TA
Sbjct: 141 ANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTA 200

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGI 240
           RD A L     KN+P+  +     K   +  + T + +     +            +DG+
Sbjct: 201 RDLASLTYHFLKNYPEILEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGL 258

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           KTG +   GFN + +++  D  ++ V++G+   Q +D
Sbjct: 259 KTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQD 295


>gi|153826719|ref|ZP_01979386.1| penicillin-binding protein 5 [Vibrio cholerae MZO-2]
 gi|149739506|gb|EDM53740.1| penicillin-binding protein 5 [Vibrio cholerae MZO-2]
          Length = 194

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 75/133 (56%), Gaps = 3/133 (2%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGIL 133
           PASLTK+MT Y+  + ++   +H + ++ +S  A  +   + SK++++  TY        
Sbjct: 62  PASLTKLMTSYVAGQEMKRGNIHADDKVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYR 121

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL +    +T  D
Sbjct: 122 GLIVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYD 181

Query: 194 QAILGILLRKNFP 206
            A+LG  + ++ P
Sbjct: 182 IALLGRAIIRDLP 194


>gi|257420425|ref|ZP_05597415.1| DD-carboxypeptidase [Enterococcus faecalis X98]
 gi|257162249|gb|EEU92209.1| DD-carboxypeptidase [Enterococcus faecalis X98]
          Length = 475

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 131/277 (47%), Gaps = 41/277 (14%)

Query: 37  LSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
           ++ I   M + L A   PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE +
Sbjct: 24  ITAIAKKMGTTLKADGIPK-AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAM 82

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AF 147
           +  K  ++T   V+ T    + SK+Y       T       + +L +I   +++V+T   
Sbjct: 83  EQGKFTMDTT--VTATQKDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLML 140

Query: 148 GEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLH---------------DKNQITTA 191
              ISG++   F  LM+ KA ++GM NT Y N SG                 + + ++TA
Sbjct: 141 ANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTA 200

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGI 240
           RD A L     KN+P+  +     K   +  + T + +     +            +DG+
Sbjct: 201 RDLASLTYHFLKNYPEILEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGL 258

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           KTG +   GFN + +++  D  ++ V++G+   Q +D
Sbjct: 259 KTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQD 295


>gi|256618116|ref|ZP_05474962.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis ATCC
           4200]
 gi|257088239|ref|ZP_05582600.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis D6]
 gi|256597643|gb|EEU16819.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis ATCC
           4200]
 gi|256996269|gb|EEU83571.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis D6]
          Length = 475

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 131/277 (47%), Gaps = 41/277 (14%)

Query: 37  LSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
           ++ I   M + L A   PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE +
Sbjct: 24  ITAIAKKMGTTLKADGIPK-AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAM 82

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AF 147
           +  K  ++T   V+ T    + SK+Y       T       + +L +I   +++V+T   
Sbjct: 83  EQGKFTMDTT--VTATQKDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLML 140

Query: 148 GEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLH---------------DKNQITTA 191
              ISG++   F  LM+ KA ++GM NT Y N SG                 + + ++TA
Sbjct: 141 ANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTA 200

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGI 240
           RD A L     KN+P+  +     K   +  + T + +     +            +DG+
Sbjct: 201 RDLASLTYHFLKNYPEILEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGL 258

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           KTG +   GFN + +++  D  ++ V++G+   Q +D
Sbjct: 259 KTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQD 295


>gi|206973720|ref|ZP_03234638.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           H3081.97]
 gi|217960011|ref|YP_002338567.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH187]
 gi|222096095|ref|YP_002530152.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1]
 gi|229139202|ref|ZP_04267777.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
 gi|206747876|gb|EDZ59265.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           H3081.97]
 gi|217064880|gb|ACJ79130.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH187]
 gi|221240153|gb|ACM12863.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1]
 gi|228644261|gb|EEL00518.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
          Length = 338

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 123/229 (53%), Gaps = 17/229 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S+I+ID +  ++   K +E P   A+L+K+MT YI  E L    + L+  + +S     A
Sbjct: 37  SAILIDAHSGEVVYTKNEETPIQSATLSKLMTEYITLEQLNEGTIQLDEVVKISNEVFRA 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             +P ++  K+KT  T    +  L+    N  + A  E I+G+E KF  LM+ KAK + +
Sbjct: 97  ETSPIQVTSKDKT--TVRDLLHTLLLTGNNRSALALAEHIAGNEDKFTQLMNEKAKHLKL 154

Query: 172 -QNTIYKNASGL-HDKNQI--TTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIIT 225
            Q++ + NA+G+ +D N++  TTA + A L   L  +FP        +  +F +++  + 
Sbjct: 155 SQSSPFLNATGMNNDTNKLSTTTAIEVAKLATQLVTDFPDVLNVTKLTSYQFTFKDTKVF 214

Query: 226 NHNKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N NK+   LN   K   +DG++T ++ N  ++ V++ +  D  +++V++
Sbjct: 215 NTNKMIYSLNKNIKHQGVDGLQTSFSTNGNYSFVSTAKRGDTRLISVIL 263


>gi|51598858|ref|YP_073046.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia garinii PBi]
 gi|51573429|gb|AAU07454.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia garinii PBi]
          Length = 401

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 108/216 (50%), Gaps = 27/216 (12%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGI 132
           PASLTK++T+Y      + + + L + +P+S +A    A  N S ++L++      E+ +
Sbjct: 65  PASLTKIVTIYTALIEAEKRNIKLKSIVPISDSASYYNAPLNSSLMFLEKGQIVNFEEIL 124

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             L   S ND S A  EF+ G    F  LM+     +G+ N  +   SG  ++N+I TA 
Sbjct: 125 KGLSVSSGNDASIAIAEFVVGDLNSFVNLMNINVLNLGLFNMHFVEPSGYSNENKI-TAL 183

Query: 193 DQAILGILLRKNFPQYYKYF----SIRKFRY---RNRIITNHNKLLN---KMHNI----- 237
           D A       K++ + +K+     S++ F Y   +N   T  +K LN   K  N+     
Sbjct: 184 DMA----FFVKSYIEKFKFMLNIHSLKYFVYPKSKNLGTTLSSKFLNLKQKNANLLISDY 239

Query: 238 ---DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
              DG+KTGY + SG N+V + +     ++AVV+G+
Sbjct: 240 PYSDGLKTGYIKESGLNLVATAQKDGRRLIAVVLGV 275


>gi|52142940|ref|YP_083889.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
 gi|51976409|gb|AAU17959.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
          Length = 338

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 125/229 (54%), Gaps = 17/229 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S+I+I+ +  ++   K +E P   A+L+K+MT YI  E L    + L+  + +S     A
Sbjct: 37  SAILINAHSGEVVYKKNEETPIQSATLSKLMTEYITLEQLNEGTIQLDEVVKISNEVFRA 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             +P ++  K+KT  T    +  L+    N  + A  E I+G+E KF  LM+ KAK++ +
Sbjct: 97  ETSPIQVISKDKT--TVRDLLHTLLLTGNNRSALALAEHIAGNEDKFTQLMNEKAKQLKL 154

Query: 172 -QNTIYKNASGL-HDKNQI--TTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIIT 225
            Q + + NA+G+ +D N++  TTA + A L   L  +FP        +  +F +++  + 
Sbjct: 155 SQLSPFLNATGMNNDTNKLSTTTAIEVAKLATQLVTDFPDVLNVTKLTSYQFTFKDTKVF 214

Query: 226 NHNKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N NK+   LN   K+  +DG++T ++ NS ++ V++ +  D  +++V++
Sbjct: 215 NTNKMIYSLNKNIKLQGVDGLQTSFSTNSNYSFVSTAKRGDTRLISVIL 263


>gi|238924099|ref|YP_002937615.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium rectale ATCC
           33656]
 gi|238875774|gb|ACR75481.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium rectale ATCC
           33656]
          Length = 301

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/125 (40%), Positives = 66/125 (52%), Gaps = 11/125 (8%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP----SKLYLKEKTYFTT 128
           E  YPAS TK++T YII      K   LN  + VS  AA  NP    S   LKE    T 
Sbjct: 73  EKLYPASTTKILTAYIIL-----KNCDLNATVTVSHDAA--NPGHSSSVCGLKEGDVITV 125

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           +  +  L+  S ND + A  E+ SGS ++FA LM++ AK  G  N+ + N SGL D+N  
Sbjct: 126 QDLLYGLLLESGNDAAIALAEYCSGSAEEFAKLMNSTAKSFGATNSNFVNPSGLPDENHY 185

Query: 189 TTARD 193
           TT  D
Sbjct: 186 TTIYD 190


>gi|255305505|ref|ZP_05349677.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile ATCC
           43255]
          Length = 409

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 20/225 (8%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE    ASL+KMMT  +  E +   ++     + + K+ A+   S   LK+    +  + 
Sbjct: 54  DEKMPLASLSKMMTFLLAIEAVDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGEL 113

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL-------HD 184
           +  L+  S ND + A  + I  +EK F  +M+ KA++IGM +T Y N +GL       H 
Sbjct: 114 MQGLMLVSGNDAAIAIAKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHK 173

Query: 185 KNQI---TTARDQAILGILLRKNFP-QYYKYFSIRKFRYRNRIIT--NHNKLLNKMHNID 238
           +  I   +TA D   LG  +  ++  Q  +  +++ +    +  T  N N LL  +  +D
Sbjct: 174 EPPIENMSTAHDIVTLGKYMYDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVD 233

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDP-------IVAVVMGMPTSQER 276
           GIKTGYT N+G+ +  S+    D        ++ VV+G    + R
Sbjct: 234 GIKTGYTDNAGYCLAFSMMVPKDAKNERSHRLIGVVLGDGNKKNR 278


>gi|327536245|gb|AEA95079.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
           OG1RF]
          Length = 493

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 131/277 (47%), Gaps = 41/277 (14%)

Query: 37  LSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
           ++ I   M + L A   PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE +
Sbjct: 42  ITAIAKKMGTTLKADGIPK-AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAM 100

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AF 147
           +  K  ++T   V+ T    + SK+Y       T       + +L +I   +++V+T   
Sbjct: 101 EQGKFTMDTT--VTATQKDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLML 158

Query: 148 GEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLH---------------DKNQITTA 191
              ISG++   F  LM+ KA ++GM NT Y N SG                 + + ++TA
Sbjct: 159 ANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTA 218

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGI 240
           RD A L     KN+P+  +     K   +  + T + +     +            +DG+
Sbjct: 219 RDLASLTYHFLKNYPEILEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGL 276

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           KTG +   GFN + +++  D  ++ V++G+   Q +D
Sbjct: 277 KTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQD 313


>gi|318056957|ref|ZP_07975680.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SA3_actG]
          Length = 886

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 98/183 (53%), Gaps = 10/183 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA------ATQNPSKLYLKEKTYFTTEQG 131
           AS+ K+MT Y++      KK      I + + A      + QN S + ++     + ++ 
Sbjct: 560 ASVAKVMTAYLVLRDHPVKKGGDGASITMDQKAEDDAGLSAQNESTVDVRAGQKLSQKEA 619

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           I A++  SAN+++     + +GSEK F   M+  A ++GM+NT Y + SGL+ K  ++TA
Sbjct: 620 IEAIMLASANNIARQLARWDAGSEKDFVAKMNKAADELGMKNTTYTDPSGLN-KTTVSTA 678

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRN-RIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
            DQ  LG +  K+ P + +   +  +   N +  TN N+L+  M+N  GIKTG T  +G 
Sbjct: 679 EDQVKLGKVAMKD-PLFREVVRMPAYVDSNGKTQTNWNRLV-PMNNTVGIKTGTTTAAGG 736

Query: 251 NIV 253
           N++
Sbjct: 737 NLL 739


>gi|134299463|ref|YP_001112959.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
           MI-1]
 gi|134052163|gb|ABO50134.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
           MI-1]
          Length = 388

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 108/220 (49%), Gaps = 30/220 (13%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK---LYLKEKTYFTT 128
           D+ R PASLTK+MT  +  E     K +L   + V + AA  +  +   L + ++ Y   
Sbjct: 57  DKRREPASLTKVMTAILAIE-----KGNLKDVVTVQQRAARVSMGQDIGLNIGDRLYL-- 109

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           E  + A +  SAND + A GE I GS  +F  +M+ KA  +G++NT + N +G H  N  
Sbjct: 110 EDLLKAALMYSANDSTVAIGEHIGGSHDQFVKMMNEKAVALGLKNTHFANTNGFHHPNHY 169

Query: 189 TTARDQAILGI--LLRKNFPQYY-----------KYFSIRKFR------YRNRIITNHNK 229
           TTA D A L    L  K F ++            K  +++  +       + R++ N N+
Sbjct: 170 TTANDLAKLTCYALQNKTFAEFVRTKEATITWLPKETAVKTGKKSEAETVKQRVLRNTNR 229

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           LL +    I+G+KTG T  +G  ++ S   +   +V V++
Sbjct: 230 LLRSDFEGINGVKTGTTPRAGNCLIASATREGRQLVVVIL 269


>gi|307284847|ref|ZP_07565003.1| putative beta-lactamase [Enterococcus faecalis TX0860]
 gi|306503106|gb|EFM72363.1| putative beta-lactamase [Enterococcus faecalis TX0860]
          Length = 493

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 131/277 (47%), Gaps = 41/277 (14%)

Query: 37  LSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
           ++ I   M + L A   PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE +
Sbjct: 42  ITAIAKKMGTTLKADGIPK-AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAM 100

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AF 147
           +  K  ++T   V+ T    + SK+Y       T       + +L +I   +++V+T   
Sbjct: 101 EQGKFTMDTT--VTATQKDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLML 158

Query: 148 GEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLH---------------DKNQITTA 191
              ISG++   F  LM+ KA ++GM NT Y N SG                 + + ++TA
Sbjct: 159 ANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTA 218

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGI 240
           RD A L     KN+P+  +     K   +  + T + +     +            +DG+
Sbjct: 219 RDLASLTYHFLKNYPEILEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGL 276

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           KTG +   GFN + +++  D  ++ V++G+   Q +D
Sbjct: 277 KTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQD 313


>gi|126698096|ref|YP_001086993.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile 630]
          Length = 414

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 20/225 (8%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE    ASL+KMMT  +  E +   ++     + + K+ A+   S   LK+    +  + 
Sbjct: 59  DEKMPLASLSKMMTFLLAIEAVDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGEL 118

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL-------HD 184
           +  L+  S ND + A  + I  +EK F  +M+ KA++IGM +T Y N +GL       H 
Sbjct: 119 MQGLMLVSGNDAAIAIAKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHK 178

Query: 185 KNQI---TTARDQAILGILLRKNFP-QYYKYFSIRKFRYRNRIIT--NHNKLLNKMHNID 238
           +  I   +TA D   LG  +  ++  Q  +  +++ +    +  T  N N LL  +  +D
Sbjct: 179 EPPIENMSTAHDIVTLGKYMYDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVD 238

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDP-------IVAVVMGMPTSQER 276
           GIKTGYT N+G+ +  S+    D        ++ VV+G    + R
Sbjct: 239 GIKTGYTDNAGYCLAFSMMVPKDAKNERNHRLIGVVLGDGNKKNR 283


>gi|307276651|ref|ZP_07557769.1| putative beta-lactamase [Enterococcus faecalis TX2134]
 gi|306506761|gb|EFM75913.1| putative beta-lactamase [Enterococcus faecalis TX2134]
          Length = 493

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 131/277 (47%), Gaps = 41/277 (14%)

Query: 37  LSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
           ++ I   M + L A   PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE +
Sbjct: 42  ITAIAKKMGTTLKADGIPK-AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAM 100

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AF 147
           +  K  ++T   V+ T    + SK+Y       T       + +L +I   +++V+T   
Sbjct: 101 EQGKFTMDTT--VTATQKDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLML 158

Query: 148 GEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLH---------------DKNQITTA 191
              ISG++   F  LM+ KA ++GM NT Y N SG                 + + ++TA
Sbjct: 159 ANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTA 218

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGI 240
           RD A L     KN+P+  +     K   +  + T + +     +            +DG+
Sbjct: 219 RDLASLTYHFLKNYPEILEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGL 276

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           KTG +   GFN + +++  D  ++ V++G+   Q +D
Sbjct: 277 KTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQD 313


>gi|315171194|gb|EFU15211.1| putative beta-lactamase [Enterococcus faecalis TX1342]
          Length = 493

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 131/277 (47%), Gaps = 41/277 (14%)

Query: 37  LSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
           ++ I   M + L A   PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE +
Sbjct: 42  ITAIAKKMGTTLKADGIPK-AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAM 100

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AF 147
           +  K  ++T   V+ T    + SK+Y       T       + +L +I   +++V+T   
Sbjct: 101 EQGKFTMDTT--VTATQKDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLML 158

Query: 148 GEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLH---------------DKNQITTA 191
              ISG++   F  LM+ KA ++GM NT Y N SG                 + + ++TA
Sbjct: 159 ANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTA 218

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGI 240
           RD A L     KN+P+  +     K   +  + T + +     +            +DG+
Sbjct: 219 RDLASLTYHFLKNYPEILEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGL 276

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           KTG +   GFN + +++  D  ++ V++G+   Q +D
Sbjct: 277 KTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQD 313


>gi|315031813|gb|EFT43745.1| putative beta-lactamase [Enterococcus faecalis TX0017]
          Length = 493

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 131/277 (47%), Gaps = 41/277 (14%)

Query: 37  LSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
           ++ I   M + L A   PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE +
Sbjct: 42  ITAIAKKMGTTLKADGIPK-AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAM 100

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AF 147
           +  K  ++T   V+ T    + SK+Y       T       + +L +I   +++V+T   
Sbjct: 101 EQGKFTMDTT--VTATQKDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLML 158

Query: 148 GEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLH---------------DKNQITTA 191
              ISG++   F  LM+ KA ++GM NT Y N SG                 + + ++TA
Sbjct: 159 ANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTA 218

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGI 240
           RD A L     KN+P+  +     K   +  + T + +     +            +DG+
Sbjct: 219 RDLASLTYHFLKNYPEILEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGL 276

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           KTG +   GFN + +++  D  ++ V++G+   Q +D
Sbjct: 277 KTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQD 313


>gi|294779975|ref|ZP_06745355.1| putative beta-lactamase [Enterococcus faecalis PC1.1]
 gi|294452956|gb|EFG21378.1| putative beta-lactamase [Enterococcus faecalis PC1.1]
 gi|315034829|gb|EFT46761.1| putative beta-lactamase [Enterococcus faecalis TX0027]
 gi|315146578|gb|EFT90594.1| putative beta-lactamase [Enterococcus faecalis TX4244]
          Length = 493

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 131/277 (47%), Gaps = 41/277 (14%)

Query: 37  LSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
           ++ I   M + L A   PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE +
Sbjct: 42  ITAIAKKMGTTLKADGIPK-AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAM 100

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AF 147
           +  K  ++T   V+ T    + SK+Y       T       + +L +I   +++V+T   
Sbjct: 101 EQGKFTMDTT--VTATQKDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLML 158

Query: 148 GEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLH---------------DKNQITTA 191
              ISG++   F  LM+ KA ++GM NT Y N SG                 + + ++TA
Sbjct: 159 ANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTA 218

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGI 240
           RD A L     KN+P+  +     K   +  + T + +     +            +DG+
Sbjct: 219 RDLASLTYHFLKNYPEILEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGL 276

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           KTG +   GFN + +++  D  ++ V++G+   Q +D
Sbjct: 277 KTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQD 313


>gi|168334024|ref|ZP_02692243.1| D-alanyl-D-alanine carboxypeptidase [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 426

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 123/261 (47%), Gaps = 28/261 (10%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTL 86
           I++M  +  L    I +A E+      ++I++D     +   K    RY PAS+TK+MT 
Sbjct: 6   IKIMLCVFLLIFPKICIAQEVPKINAEAAILMDAKTGTILYEKNAYNRYYPASITKLMTA 65

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSANDV 143
           Y+  ++L       N  I  S  A T    + S++ ++E      +Q + AL+  SANDV
Sbjct: 66  YLAIQHLNP-----NDYITFSNHAVTSIDSDSSRIGMREGEKLLVDQALHALLLDSANDV 120

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           + A GE +SG+ + FA LM+  A   G   T + N  GLH+    TT  D A++   +  
Sbjct: 121 ANALGEAVSGTTENFAQLMTKTAHDFGATATNFANPHGLHNSKHYTTPYDMALITKAIYN 180

Query: 204 NFPQYYK------YFSIRKFRYRNRII--TNHNKLLNKMHN--------IDGIKTGYTRN 247
           +  +Y +       + I      N+ I  +  + L+N + +        I G KTGYT  
Sbjct: 181 D--EYLREIMDTPTYQIPSTNLSNKTIYLSQSHALMNPIRDSQRYREDVILG-KTGYTTP 237

Query: 248 SGFNIVTSLRYKDDPIVAVVM 268
           +G  +VT  +  +  ++ V+M
Sbjct: 238 AGNTLVTVGKRGEVELIVVIM 258


>gi|167759042|ref|ZP_02431169.1| hypothetical protein CLOSCI_01389 [Clostridium scindens ATCC 35704]
 gi|167663449|gb|EDS07579.1| hypothetical protein CLOSCI_01389 [Clostridium scindens ATCC 35704]
          Length = 406

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 144/290 (49%), Gaps = 37/290 (12%)

Query: 22  IYIQRNIQLMGKILFLSIIMI----SMASELHAKPK------YSSIVIDVNKNQMT-GFK 70
           ++  R  +L+G IL   I++I    + A E  A  +       S++++D +  ++  G  
Sbjct: 2   VWQMRKNRLLG-ILLACILLIQPFSAQAKESDAADEPDNLYAQSAVLMDADSGRVLFGKN 60

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
           ++E +  AS TK+MT  +  E ++  ++     +  S  AA+Q   +L ++ K  +  + 
Sbjct: 61  ENEAKPMASTTKIMTCIMALENMEEGQI-----VAASDYAASQPKVRLGVRGKEEYYLKD 115

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--HDKNQI 188
            + +L+  S ND +    E I+GS + FA LM+ KA++IG ++T +   +GL  +D    
Sbjct: 116 ILYSLMLESHNDSAVVVAEGIAGSVEAFAGLMNQKAEEIGCKDTYFVTPNGLDAYDDGGT 175

Query: 189 --TTARDQAILGILLRKNFPQYYKYFSI---RKFRYRNRI------ITNHNKLLNKMHNI 237
             TTARD A +        P+  ++  I   + + + N          NHN  L+ M   
Sbjct: 176 HSTTARDLASIMRYCIMESPKKDEFLEITGTKNYHFTNVAGDREFSCNNHNAFLDMMDGA 235

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDP--IVAVV-MGMPTSQE---RDQKAL 281
              KTG+T ++G+  V +LR KD    IVA++  G P +++   +D KAL
Sbjct: 236 LTGKTGFTGDAGYCYVGALR-KDGKTFIVALLACGWPNNKDYKWKDTKAL 284


>gi|307292145|ref|ZP_07572011.1| putative beta-lactamase [Enterococcus faecalis TX0411]
 gi|306496798|gb|EFM66349.1| putative beta-lactamase [Enterococcus faecalis TX0411]
          Length = 493

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 131/277 (47%), Gaps = 41/277 (14%)

Query: 37  LSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
           ++ I   M + L A   PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE +
Sbjct: 42  ITAIAKKMGTTLKADGIPK-AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAM 100

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AF 147
           +  K  ++T   V+ T    + SK+Y       T       + +L +I   +++V+T   
Sbjct: 101 EQGKFTMDTT--VTATQKDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLML 158

Query: 148 GEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLH---------------DKNQITTA 191
              ISG++   F  LM+ KA ++GM NT Y N SG                 + + ++TA
Sbjct: 159 ANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTA 218

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGI 240
           RD A L     KN+P+  +     K   +  + T + +     +            +DG+
Sbjct: 219 RDLASLTYHFLKNYPEILEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGL 276

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           KTG +   GFN + +++  D  ++ V++G+   Q +D
Sbjct: 277 KTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQD 313


>gi|260682216|ref|YP_003213501.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196]
 gi|260685815|ref|YP_003216948.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291]
 gi|260208379|emb|CBA60888.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196]
 gi|260211831|emb|CBE02232.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291]
          Length = 414

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 20/225 (8%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE    ASL+KMMT  +  E +   ++     + + K+ A+   S   LK+    +  + 
Sbjct: 59  DEKMPLASLSKMMTFLLAIEAVDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGEL 118

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL-------HD 184
           +  L+  S ND + A  + I  +EK F  +M+ KA++IGM +T Y N +GL       H 
Sbjct: 119 MQGLMLVSGNDAAIAIAKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHK 178

Query: 185 KNQI---TTARDQAILGILLRKNFP-QYYKYFSIRKFRYRNRIIT--NHNKLLNKMHNID 238
           +  I   +TA D   LG  +  ++  Q  +  +++ +    +  T  N N LL  +  +D
Sbjct: 179 EPPIENMSTAHDIVTLGKYMYDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVD 238

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDP-------IVAVVMGMPTSQER 276
           GIKTGYT N+G+ +  S+    D        ++ VV+G    + R
Sbjct: 239 GIKTGYTDNAGYCLAFSMMVPKDAKNERNHRLIGVVLGDGNKKNR 283


>gi|255099621|ref|ZP_05328598.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-63q42]
 gi|328887546|emb|CAJ67349.2| D-alanyl-D-alanine carboxypeptidase, S11 peptidase family
           [Clostridium difficile]
          Length = 409

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 20/225 (8%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE    ASL+KMMT  +  E +   ++     + + K+ A+   S   LK+    +  + 
Sbjct: 54  DEKMPLASLSKMMTFLLAIEAVDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGEL 113

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL-------HD 184
           +  L+  S ND + A  + I  +EK F  +M+ KA++IGM +T Y N +GL       H 
Sbjct: 114 MQGLMLVSGNDAAIAIAKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHK 173

Query: 185 KNQI---TTARDQAILGILLRKNFP-QYYKYFSIRKFRYRNRIIT--NHNKLLNKMHNID 238
           +  I   +TA D   LG  +  ++  Q  +  +++ +    +  T  N N LL  +  +D
Sbjct: 174 EPPIENMSTAHDIVTLGKYMYDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVD 233

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDP-------IVAVVMGMPTSQER 276
           GIKTGYT N+G+ +  S+    D        ++ VV+G    + R
Sbjct: 234 GIKTGYTDNAGYCLAFSMMVPKDAKNERNHRLIGVVLGDGNKKNR 278


>gi|254974115|ref|ZP_05270587.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-66c26]
 gi|255091514|ref|ZP_05320992.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CIP
           107932]
 gi|255313242|ref|ZP_05354825.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-76w55]
 gi|255515932|ref|ZP_05383608.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-97b34]
 gi|255649025|ref|ZP_05395927.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-37x79]
 gi|306519141|ref|ZP_07405488.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-32g58]
          Length = 409

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 20/225 (8%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE    ASL+KMMT  +  E +   ++     + + K+ A+   S   LK+    +  + 
Sbjct: 54  DEKMPLASLSKMMTFLLAIEAVDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGEL 113

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL-------HD 184
           +  L+  S ND + A  + I  +EK F  +M+ KA++IGM +T Y N +GL       H 
Sbjct: 114 MQGLMLVSGNDAAIAIAKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHK 173

Query: 185 KNQI---TTARDQAILGILLRKNFP-QYYKYFSIRKFRYRNRIIT--NHNKLLNKMHNID 238
           +  I   +TA D   LG  +  ++  Q  +  +++ +    +  T  N N LL  +  +D
Sbjct: 174 EPPIENMSTAHDIVTLGKYMYDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVD 233

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDP-------IVAVVMGMPTSQER 276
           GIKTGYT N+G+ +  S+    D        ++ VV+G    + R
Sbjct: 234 GIKTGYTDNAGYCLAFSMMVPKDAKNERNHRLIGVVLGDGNKKNR 278


>gi|223889041|ref|ZP_03623632.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 64b]
 gi|223885857|gb|EEF56956.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 64b]
          Length = 388

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 27/216 (12%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGI 132
           PASLTK++T+Y      + + + L + +P+S +A    A  N S ++L++      E+ +
Sbjct: 56  PASLTKIVTIYTALIEAEKRNIKLKSIVPISDSASYYNAPPNSSLMFLEKGQIVNFEEIL 115

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             L   S ND S A  EF+ G+   F  LM+     +G+ N  +   SG   +N+I TA 
Sbjct: 116 KGLSVSSGNDSSIAIAEFVVGNLNSFVNLMNINVLNLGLFNMHFVEPSGYSSENKI-TAL 174

Query: 193 DQAILGILLRKNFPQYYKYF----SIRKFRY---RNRIITNHNKLLN-KMHNI------- 237
           D A       K++ + +K+     S++ F Y   RN      +K LN K  N        
Sbjct: 175 DMA----FFVKSYIEKFKFMLNIHSLKYFIYPKSRNLGTALSSKFLNLKQRNANLLIYDY 230

Query: 238 ---DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
              DGIKTGY + SG N+V + +  +  ++AVV+G+
Sbjct: 231 PYSDGIKTGYIKESGLNLVATAKKGERRLIAVVLGV 266


>gi|307273627|ref|ZP_07554855.1| putative beta-lactamase [Enterococcus faecalis TX0855]
 gi|306509640|gb|EFM78682.1| putative beta-lactamase [Enterococcus faecalis TX0855]
          Length = 493

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 131/277 (47%), Gaps = 41/277 (14%)

Query: 37  LSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
           ++ I   M + L A   PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE +
Sbjct: 42  ITAIAKKMGTTLKADGIPK-AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAM 100

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AF 147
           +  K  ++T   V+ T    + SK+Y       T       + +L +I   +++V+T   
Sbjct: 101 EQGKFTMDTT--VTATQKDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLML 158

Query: 148 GEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLH---------------DKNQITTA 191
              ISG++   F  LM+ KA ++GM NT Y N SG                 + + ++TA
Sbjct: 159 ANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTA 218

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGI 240
           RD A L     KN+P+  +     K   +  + T + +     +            +DG+
Sbjct: 219 RDLASLTYHFLKNYPEILEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGL 276

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           KTG +   GFN + +++  D  ++ V++G+   Q +D
Sbjct: 277 KTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQD 313


>gi|293385132|ref|ZP_06630958.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
           R712]
 gi|293389105|ref|ZP_06633577.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
           S613]
 gi|312906684|ref|ZP_07765684.1| putative beta-lactamase [Enterococcus faecalis DAPTO 512]
 gi|312910854|ref|ZP_07769690.1| putative beta-lactamase [Enterococcus faecalis DAPTO 516]
 gi|291077609|gb|EFE14973.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
           R712]
 gi|291081573|gb|EFE18536.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
           S613]
 gi|310627332|gb|EFQ10615.1| putative beta-lactamase [Enterococcus faecalis DAPTO 512]
 gi|311288877|gb|EFQ67433.1| putative beta-lactamase [Enterococcus faecalis DAPTO 516]
          Length = 493

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 131/277 (47%), Gaps = 41/277 (14%)

Query: 37  LSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
           ++ I   M + L A   PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE +
Sbjct: 42  ITAIAKKMGTTLKADGIPK-AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAM 100

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AF 147
           +  K  ++T   V+ T    + SK+Y       T       + +L +I   +++V+T   
Sbjct: 101 EQGKFTMDTT--VTATQKDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLML 158

Query: 148 GEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLH---------------DKNQITTA 191
              ISG++   F  LM+ KA ++GM NT Y N SG                 + + ++TA
Sbjct: 159 ANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTA 218

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGI 240
           RD A L     KN+P+  +     K   +  + T + +     +            +DG+
Sbjct: 219 RDLASLTYHFLKNYPEILEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGL 276

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           KTG +   GFN + +++  D  ++ V++G+   Q +D
Sbjct: 277 KTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQD 313


>gi|315172967|gb|EFU16984.1| putative beta-lactamase [Enterococcus faecalis TX1346]
          Length = 493

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 131/277 (47%), Gaps = 41/277 (14%)

Query: 37  LSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
           ++ I   M + L A   PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE +
Sbjct: 42  ITAIAKKMGTTLKADGIPK-AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAM 100

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AF 147
           +  K  ++T   V+ T    + SK+Y       T       + +L +I   +++V+T   
Sbjct: 101 EQGKFTMDTT--VTATQKDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLML 158

Query: 148 GEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLH---------------DKNQITTA 191
              ISG++   F  LM+ KA ++GM NT Y N SG                 + + ++TA
Sbjct: 159 ANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTA 218

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGI 240
           RD A L     KN+P+  +     K   +  + T + +     +            +DG+
Sbjct: 219 RDLASLTYHFLKNYPEILEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGL 276

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           KTG +   GFN + +++  D  ++ V++G+   Q +D
Sbjct: 277 KTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQD 313


>gi|291532593|emb|CBL05706.1| D-alanyl-D-alanine carboxypeptidase [Megamonas hypermegale ART12/1]
          Length = 424

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 140/306 (45%), Gaps = 17/306 (5%)

Query: 35  LFLSIIMISMASELHAKPKYSSI---VIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIF 90
           L L I  I++A  L   P  S++   +ID + N  + G  +D+  +PAS TK+MT  +  
Sbjct: 35  LCLLICNIALAKTL-PNPDTSAVSACLIDADDNGVLYGKDEDKIMHPASTTKIMTAILA- 92

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             L+S KL  +  + ++  A    PS L L+     T  + +  ++  S ND + A  + 
Sbjct: 93  --LESGKL--DEPLVITPEAVNTEPSSLGLRLGDKITLREALTGMMIVSGNDAAVAVAQT 148

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           ++GS   FA +M++KAK++G  NT + N  GL  +   +TA D AI+     K  P++ +
Sbjct: 149 VAGSVPAFAKMMNDKAKELGAVNTHFLNPHGLTAQGHYSTAHDMAIIASYAMKK-PEFRE 207

Query: 211 YFSIRKFRYR-----NRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
             S + +  +        +T  N+ L +     +GIKTG+T  +G  +V S       ++
Sbjct: 208 IVSKKAYNMKYMDGHTEYVTTTNRFLKSGFEGANGIKTGFTNAAGDCLVASATRGQKTLI 267

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
           AV        +     LE   SF +   L+ +    K N+   +      IK  + T   
Sbjct: 268 AVFYNDDYRWDDAPTWLEFGFSFYDPSELQDKTVVSKQNVIKLNKITEQRIKHSRETNKN 327

Query: 325 FKKIDA 330
              +DA
Sbjct: 328 LAALDA 333


>gi|257080473|ref|ZP_05574834.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis E1Sol]
 gi|256988503|gb|EEU75805.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis E1Sol]
          Length = 475

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 130/277 (46%), Gaps = 41/277 (14%)

Query: 37  LSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
           ++ I   M + L A   PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE +
Sbjct: 24  ITAIAKKMGTTLKADGIPK-AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAM 82

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AF 147
           +  K  ++T   V+ T    + SK+Y       T       + +L +I   +++V+T   
Sbjct: 83  EQGKFTMDTT--VTATQKDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLML 140

Query: 148 GEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLH---------------DKNQITTA 191
              ISG +   F  LM+ KA ++GM NT Y N SG                 + + ++TA
Sbjct: 141 ANLISGDQPTDFVHLMNQKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTA 200

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGI 240
           RD A L     KN+P+  +     K   +  + T + +     +            +DG+
Sbjct: 201 RDLASLTYHFLKNYPEILEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGL 258

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           KTG +   GFN + +++  D  ++ V++G+   Q +D
Sbjct: 259 KTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQD 295


>gi|300861515|ref|ZP_07107599.1| putative beta-lactamase [Enterococcus faecalis TUSoD Ef11]
 gi|312902122|ref|ZP_07761382.1| putative beta-lactamase [Enterococcus faecalis TX0470]
 gi|300848976|gb|EFK76729.1| putative beta-lactamase [Enterococcus faecalis TUSoD Ef11]
 gi|311290786|gb|EFQ69342.1| putative beta-lactamase [Enterococcus faecalis TX0470]
 gi|315026425|gb|EFT38357.1| putative beta-lactamase [Enterococcus faecalis TX2137]
 gi|315144141|gb|EFT88157.1| putative beta-lactamase [Enterococcus faecalis TX2141]
 gi|315167228|gb|EFU11245.1| putative beta-lactamase [Enterococcus faecalis TX1341]
          Length = 493

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 131/277 (47%), Gaps = 41/277 (14%)

Query: 37  LSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
           ++ I   M + L A   PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE +
Sbjct: 42  ITAIAKKMGTTLKADGIPK-AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAM 100

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AF 147
           +  K  ++T   V+ T    + SK+Y       T       + +L +I   +++V+T   
Sbjct: 101 EQGKFTMDTT--VTATQKDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLML 158

Query: 148 GEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLH---------------DKNQITTA 191
              ISG++   F  LM+ KA ++GM NT Y N SG                 + + ++TA
Sbjct: 159 ANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTA 218

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGI 240
           RD A L     KN+P+  +     K   +  + T + +     +            +DG+
Sbjct: 219 RDLASLTYHFLKNYPEILEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGL 276

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           KTG +   GFN + +++  D  ++ V++G+   Q +D
Sbjct: 277 KTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQD 313


>gi|259046641|ref|ZP_05737042.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella adiacens
           ATCC 49175]
 gi|259036806|gb|EEW38061.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella adiacens
           ATCC 49175]
          Length = 500

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 119/244 (48%), Gaps = 28/244 (11%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----T 109
           S+I++D    Q + G   D+P  PAS TK+MT Y+++E +++ K+ L+T+I  ++     
Sbjct: 92  SAILVDAETGQILYGDHIDKPWDPASTTKLMTAYLVYEAIKAGKITLDTKITATELDRAI 151

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +   + S   ++    +     +  ++  S+N  +      IS S +++  +M++KAK++
Sbjct: 152 STIDDISNNQIRAGIEYPVRDLLYLMMYPSSNVATVMLSHAISQSNEEYIKMMNDKAKEL 211

Query: 170 GMQNTIYKNAS--------------GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           GM N+ + N S              G+ D+   TTARD A L     KN+P++ +     
Sbjct: 212 GMTNSKFYNPSGAVVSAFRGLYTVEGVPDEYNQTTARDLATLSYYFLKNYPEFLEITREP 271

Query: 216 KFRYRNRIITNH-----NKLLNKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
                   +        N+L + M+    ++DG KTG + N+  N V + + K   ++ V
Sbjct: 272 AVTTMEGTVVEETFYTLNQLASGMNQGYFHVDGFKTGSSPNAALNHVITAKEKGRRVIEV 331

Query: 267 VMGM 270
           +MG+
Sbjct: 332 LMGV 335


>gi|225574473|ref|ZP_03783083.1| hypothetical protein RUMHYD_02548 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038323|gb|EEG48569.1| hypothetical protein RUMHYD_02548 [Blautia hydrogenotrophica DSM
           10507]
          Length = 409

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 106/226 (46%), Gaps = 16/226 (7%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS-KLYLKEKTYFTTE 129
           +D   YP+S+TK+MT  I    L++  L     +  + TAA+ N S  L  +    FT E
Sbjct: 73  KDAALYPSSITKIMTTLIA---LENSSLADTVTMTQTGTAASGNGSVSLNAQVGETFTME 129

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           Q + A++  SAND+ST   E + GS + F  +M+ KAK +G  NT + N +GL D+ Q +
Sbjct: 130 QCLYAIMLGSANDISTQIAEQVGGSVENFVTMMNQKAKDLGCTNTNFTNPTGLPDEKQTS 189

Query: 190 TARDQAIL--GILLRKNFPQYYKYFS----IRKFRYRNRIITNHNKLLNKM-----HNID 238
           TA D A++    L  ++F       +            R +TN+  L             
Sbjct: 190 TAYDLALIMQAALKNESFQTIASAMTYTIPATNLTSAERNLTNNFPLSTATSASYYEGTL 249

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           G K+GYT  SG  +          ++ VV+   T Q+   +A+ L+
Sbjct: 250 GGKSGYTEASGSTLAAGASRNGTTLICVVLSG-TEQQVPPEAITLL 294


>gi|224533632|ref|ZP_03674221.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
           CA-11.2a]
 gi|225549566|ref|ZP_03770532.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
           118a]
 gi|224513305|gb|EEF83667.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
           CA-11.2a]
 gi|225369843|gb|EEG99290.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
           118a]
          Length = 405

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 27/216 (12%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGI 132
           PASLTK++T+Y      + + + L + +P+S +A    A  N S ++L++      E+ +
Sbjct: 65  PASLTKIVTIYTALIEAEKRNIKLKSIVPISDSASYYNAPPNSSLMFLEKGQIVNFEEIL 124

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             L   S ND S A  EF+ G+   F  LM+     +G+ N  +   SG   +N+I TA 
Sbjct: 125 KGLSVSSGNDSSIAIAEFVVGNLNSFVNLMNINVLNLGLFNMHFVEPSGYSSENKI-TAL 183

Query: 193 DQAILGILLRKNFPQYYKYF----SIRKFRY---RNRIITNHNKLLN-KMHNI------- 237
           D A       K++ + +K+     S++ F Y   RN      +K LN K  N        
Sbjct: 184 DMA----FFVKSYIEKFKFMLNIHSLKYFIYPKSRNLGTALSSKFLNLKQRNANLLIYDY 239

Query: 238 ---DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
              DGIKTGY + SG N+V + +  +  ++AVV+G+
Sbjct: 240 PYSDGIKTGYIKESGLNLVATAKKGERRLIAVVLGV 275


>gi|15594950|ref|NP_212739.1| serine-type D-Ala-D-Ala carboxypeptidase (dacA) [Borrelia
           burgdorferi B31]
 gi|2688537|gb|AAC66969.1| serine-type D-Ala-D-Ala carboxypeptidase (dacA) [Borrelia
           burgdorferi B31]
          Length = 405

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 27/216 (12%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGI 132
           PASLTK++T+Y      + + + L + +P+S +A    A  N S ++L++      E+ +
Sbjct: 65  PASLTKIVTIYTALIEAEKRNIKLKSIVPISDSASYYNAPPNSSLMFLEKGQIVNFEEIL 124

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             L   S ND S A  EF+ G+   F  LM+     +G+ N  +   SG   +N+I TA 
Sbjct: 125 KGLSVSSGNDSSIAIAEFVVGNLNSFVNLMNINVLNLGLFNMHFVEPSGYSSENKI-TAL 183

Query: 193 DQAILGILLRKNFPQYYKYF----SIRKFRY---RNRIITNHNKLLN-KMHNI------- 237
           D A       K++ + +K+     S++ F Y   RN      +K LN K  N        
Sbjct: 184 DMA----FFVKSYIEKFKFMLNIHSLKYFIYPKSRNLGTALSSKFLNLKQRNANLLIYDY 239

Query: 238 ---DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
              DGIKTGY + SG N+V + +  +  ++AVV+G+
Sbjct: 240 PYSDGIKTGYIKESGLNLVATAKKGERRLIAVVLGV 275


>gi|216264541|ref|ZP_03436533.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
           156a]
 gi|224532771|ref|ZP_03673388.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
           WI91-23]
 gi|226320832|ref|ZP_03796385.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
           29805]
 gi|215981014|gb|EEC21821.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
           156a]
 gi|224512389|gb|EEF82773.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
           WI91-23]
 gi|226233774|gb|EEH32502.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
           29805]
          Length = 405

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 27/216 (12%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGI 132
           PASLTK++T+Y      + + + L + +P+S +A    A  N S ++L++      E+ +
Sbjct: 65  PASLTKIVTIYTALIEAEKRNIKLKSIVPISDSASYYNAPPNSSLMFLEKGQIVNFEEIL 124

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             L   S ND S A  EF+ G+   F  LM+     +G+ N  +   SG   +N+I TA 
Sbjct: 125 KGLSVSSGNDSSIAIAEFVVGNLNSFVNLMNINVLNLGLFNMHFVEPSGYSSENKI-TAL 183

Query: 193 DQAILGILLRKNFPQYYKYF----SIRKFRY---RNRIITNHNKLLN-KMHNI------- 237
           D A       K++ + +K+     S++ F Y   RN      +K LN K  N        
Sbjct: 184 DMA----FFVKSYIEKFKFMLNIHSLKYFIYPKSRNLGTALSSKFLNLKQRNANLLIYDY 239

Query: 238 ---DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
              DGIKTGY + SG N+V + +  +  ++AVV+G+
Sbjct: 240 PYSDGIKTGYIKESGLNLVATAKKGERRLIAVVLGV 275


>gi|29377583|ref|NP_816737.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis V583]
 gi|227554548|ref|ZP_03984595.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis HH22]
 gi|229548016|ref|ZP_04436741.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis ATCC
           29200]
 gi|312905434|ref|ZP_07764548.1| putative beta-lactamase [Enterococcus faecalis TX0635]
 gi|312953223|ref|ZP_07772069.1| putative beta-lactamase [Enterococcus faecalis TX0102]
 gi|12188896|emb|CAC21495.1| DD-carboxypeptidase [Enterococcus faecalis]
 gi|29345050|gb|AAO82807.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis V583]
 gi|227176346|gb|EEI57318.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis HH22]
 gi|229306892|gb|EEN72888.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis ATCC
           29200]
 gi|310628840|gb|EFQ12123.1| putative beta-lactamase [Enterococcus faecalis TX0102]
 gi|310631163|gb|EFQ14446.1| putative beta-lactamase [Enterococcus faecalis TX0635]
 gi|315152792|gb|EFT96808.1| putative beta-lactamase [Enterococcus faecalis TX0031]
 gi|315159373|gb|EFU03390.1| putative beta-lactamase [Enterococcus faecalis TX0312]
 gi|315161196|gb|EFU05213.1| putative beta-lactamase [Enterococcus faecalis TX0645]
 gi|315573276|gb|EFU85467.1| putative beta-lactamase [Enterococcus faecalis TX0309B]
 gi|315577112|gb|EFU89303.1| putative beta-lactamase [Enterococcus faecalis TX0630]
 gi|315581150|gb|EFU93341.1| putative beta-lactamase [Enterococcus faecalis TX0309A]
 gi|323479056|gb|ADX78495.1| D-alanyl-D-alanine carboxypeptidase family protein [Enterococcus
           faecalis 62]
          Length = 493

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 131/277 (47%), Gaps = 41/277 (14%)

Query: 37  LSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
           ++ I   M + L A   PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE +
Sbjct: 42  ITAIAKKMGTTLKADGIPK-AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAM 100

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AF 147
           +  K  ++T   V+ T    + SK+Y       T       + +L +I   +++V+T   
Sbjct: 101 EQGKFTMDTT--VTATQKDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLML 158

Query: 148 GEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLH---------------DKNQITTA 191
              ISG++   F  LM+ KA ++GM NT Y N SG                 + + ++TA
Sbjct: 159 ANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTA 218

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGI 240
           RD A L     KN+P+  +     K   +  + T + +     +            +DG+
Sbjct: 219 RDLASLTYHFLKNYPEILEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGL 276

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           KTG +   GFN + +++  D  ++ V++G+   Q +D
Sbjct: 277 KTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQD 313


>gi|257083197|ref|ZP_05577558.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis Fly1]
 gi|256991227|gb|EEU78529.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis Fly1]
          Length = 475

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 124/260 (47%), Gaps = 39/260 (15%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE ++  K  ++T   V+ T 
Sbjct: 41  PK-AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTT--VTATQ 97

Query: 111 ATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AFGEFISGSEK-KFAILMS 163
              + SK+Y       T       + +L +I   +++V+T      ISG++   F  LM+
Sbjct: 98  KDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMN 157

Query: 164 NKAKKIGMQNTIYKNASGLH---------------DKNQITTARDQAILGILLRKNFPQY 208
            KA ++GM NT Y N SG                 + + ++TARD A L     KN+P+ 
Sbjct: 158 QKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEI 217

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGIKTGYTRNSGFNIVTSLR 257
            +     K   +  + T + +     +            +DG+KTG +   GFN + +++
Sbjct: 218 LEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVK 275

Query: 258 YKDDPIVAVVMGMPTSQERD 277
             D  ++ V++G+   Q +D
Sbjct: 276 QGDFRLIEVILGVGNWQNQD 295


>gi|195941738|ref|ZP_03087120.1| serine-type D-Ala-D-Ala carboxypeptidase (dacA) [Borrelia
           burgdorferi 80a]
 gi|218249458|ref|YP_002375112.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi ZS7]
 gi|226321911|ref|ZP_03797437.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
           Bol26]
 gi|218164646|gb|ACK74707.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi ZS7]
 gi|226233100|gb|EEH31853.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
           Bol26]
 gi|312148150|gb|ADQ30809.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi JD1]
 gi|312149468|gb|ADQ29539.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi N40]
          Length = 396

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 27/216 (12%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGI 132
           PASLTK++T+Y      + + + L + +P+S +A    A  N S ++L++      E+ +
Sbjct: 56  PASLTKIVTIYTALIEAEKRNIKLKSIVPISDSASYYNAPPNSSLMFLEKGQIVNFEEIL 115

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             L   S ND S A  EF+ G+   F  LM+     +G+ N  +   SG   +N+I TA 
Sbjct: 116 KGLSVSSGNDSSIAIAEFVVGNLNSFVNLMNINVLNLGLFNMHFVEPSGYSSENKI-TAL 174

Query: 193 DQAILGILLRKNFPQYYKYF----SIRKFRY---RNRIITNHNKLLN-KMHNI------- 237
           D A       K++ + +K+     S++ F Y   RN      +K LN K  N        
Sbjct: 175 DMA----FFVKSYIEKFKFMLNIHSLKYFIYPKSRNLGTALSSKFLNLKQRNANLLIYDY 230

Query: 238 ---DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
              DGIKTGY + SG N+V + +  +  ++AVV+G+
Sbjct: 231 PYSDGIKTGYIKESGLNLVATAKKGERRLIAVVLGV 266


>gi|317133056|ref|YP_004092370.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ethanoligenens
           harbinense YUAN-3]
 gi|315471035|gb|ADU27639.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ethanoligenens
           harbinense YUAN-3]
          Length = 389

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 94/214 (43%), Gaps = 14/214 (6%)

Query: 75  RYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           R P AS TK+MT       L  +   L+    V   A T   S + L+     T    + 
Sbjct: 51  RLPMASTTKIMT-----GLLACESGELDKTFTVPPEALTVEGSSMGLQPDESITLRALVY 105

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  S ND + +    + GS + FA  M+ KA+ + + +T + N SGL      TTA D
Sbjct: 106 GLLLESGNDAANSIAMLLGGSVEGFAAQMNAKARALHLNDTHFANPSGLGADGHYTTALD 165

Query: 194 QAILGILLRKNFPQYYKYFSIRK--FRYRN----RIITNHNKLLNKMHNIDGIKTGYTRN 247
            A LG    KN P + +    R+    Y      R + NHN+LL       GIKTG+T+ 
Sbjct: 166 LARLGAYAMKN-PDFAQIVGTRRATVSYNGIANARTLINHNRLLGSYDGEIGIKTGFTKK 224

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           SG  +V+  R     +V   +  P    RD  AL
Sbjct: 225 SGRCLVSCARRGGVTLVLATLNDP-DDWRDHAAL 257


>gi|315154713|gb|EFT98729.1| putative beta-lactamase [Enterococcus faecalis TX0043]
          Length = 493

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 131/277 (47%), Gaps = 41/277 (14%)

Query: 37  LSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
           ++ I   M + L A   PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE +
Sbjct: 42  ITAIAKKMGTTLKADGIPK-AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAM 100

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AF 147
           +  K  ++T   V+ T    + SK+Y       T       + +L +I   +++V+T   
Sbjct: 101 EQGKFTMDTT--VTATQKDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLML 158

Query: 148 GEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLH---------------DKNQITTA 191
              ISG++   F  LM+ KA ++GM NT Y N SG                 + + ++TA
Sbjct: 159 ANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTA 218

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGI 240
           RD A L     KN+P+  +     K   +  + T + +     +            +DG+
Sbjct: 219 RDLASLTYHFLKNYPEILEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGL 276

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           KTG +   GFN + +++  D  ++ V++G+   Q +D
Sbjct: 277 KTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQD 313


>gi|251781774|ref|YP_002996076.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242390403|dbj|BAH80862.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|323126581|gb|ADX23878.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 393

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 118/252 (46%), Gaps = 35/252 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +PK +SIV+D N + +      D PR PAS++KM TLY++FE L   K+ ++T +  ++T
Sbjct: 42  RPK-ASIVVDANTSDILWQDNIDIPRDPASMSKMFTLYVLFEELAKGKITMDTTVTATET 100

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILM 162
              Q  +K+Y      +     +     I      S+N  +     ++S ++   F   +
Sbjct: 101 --DQAIAKIYEISNNNIVAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRI 158

Query: 163 SNKAKKIGMQNTIYKNASGLHDK---------------NQITTARDQAILGILLRKNFPQ 207
           +  AKK+GM NT + NASG   +                 ITTARD A L     K +PQ
Sbjct: 159 NATAKKLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSAANITTARDLAKLLYAFLKKYPQ 218

Query: 208 YYKY------FSIRKFRYRNRIITNHNKLLNK---MHNIDGIKTGYTRNSGFNIVTSLRY 258
              +       ++    Y     T ++ L N    M  +DG+KTG + ++ FN + + + 
Sbjct: 219 IIDFTNQSVVHTMVGTPYEEEFHTYNHSLPNNQFGMEGVDGLKTGSSPSAAFNAMVTAKR 278

Query: 259 KDDPIVAVVMGM 270
            +  ++ +VMG+
Sbjct: 279 GNTRLITIVMGV 290


>gi|225548661|ref|ZP_03769708.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 94a]
 gi|225370691|gb|EEH00127.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 94a]
          Length = 405

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 27/216 (12%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGI 132
           PASLTK++T+Y      + + + L + +P+S +A    A  N S ++L++      E+ +
Sbjct: 65  PASLTKIVTIYTALIEAEKRNIKLKSIVPISDSASYYNAPPNSSLMFLEKGQIVNFEEIL 124

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             L   S ND S A  EF+ G+   F  LM+     +G+ N  +   SG   +N+I TA 
Sbjct: 125 KGLSVSSGNDSSIAIAEFVVGNLNSFVNLMNINVLNLGLFNMHFVEPSGYSSENKI-TAL 183

Query: 193 DQAILGILLRKNFPQYYKYF----SIRKFRY---RNRIITNHNKLLN-KMHNI------- 237
           D A       K++ + +K+     S++ F Y   RN      +K LN K  N        
Sbjct: 184 DMA----FFVKSYIEKFKFMLNIHSLKYFIYPKSRNLGTALSSKFLNLKQRNANLLIYDY 239

Query: 238 ---DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
              DGIKTGY + SG N+V + +  +  ++AVV+G+
Sbjct: 240 PYSDGIKTGYIKESGLNLVATAKKGERRLIAVVLGV 275


>gi|56961794|ref|YP_173516.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16]
 gi|56908028|dbj|BAD62555.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16]
          Length = 429

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 121/251 (48%), Gaps = 30/251 (11%)

Query: 55  SSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK---- 108
           ++IV++ +  Q+  F+Q  DE    AS+TKMMT YI+ E + +  +    ++ ++     
Sbjct: 28  AAIVVNADTGQIL-FEQNSDEQLAIASMTKMMTEYIVLESIANGDISWEDEVTITDHLLP 86

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            +  +  S + L++   +T +    ++   SAN  + A  E ++G+E +F   M+ KA++
Sbjct: 87  LSHQRELSNVPLRQDYTYTVKDLYESMAIYSANASTMALAEHVAGTEAQFVAKMNEKAEE 146

Query: 169 IGMQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           +G++   + NASGL+              D     +AR  A L   L K+FP+     S+
Sbjct: 147 LGLEKYEFINASGLNNADLQGEHPEGTPADGETTLSARSVAQLAYHLLKDFPEVLDTASV 206

Query: 215 RKFRYRNRI-----ITNHNKLL-NKMH---NIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            +  + +       + N N +L N  H    +DG+KTGYT  +G +   +       ++ 
Sbjct: 207 PEAVFDSGPDEKIDMQNWNWMLPNSPHYYEGVDGLKTGYTDAAGNSFTATAERDGVRLIT 266

Query: 266 VVMGMPTSQER 276
           VVMG  T  +R
Sbjct: 267 VVMGTDTRDDR 277


>gi|168335230|ref|ZP_02693333.1| Serine-type D-Ala-D-Ala carboxypeptidase [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 377

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 101/210 (48%), Gaps = 14/210 (6%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK+MT  I  E       +L   + VS  AA   P  L LKE         + +L+ 
Sbjct: 55  ASTTKIMTAIIALE-----NGNLEDVVTVSANAAKAPPVDLKLKENEKQYLGDLLYSLML 109

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND + A  E I GS ++F  +M+ KA ++G  NT ++  +GL  +   +T  D A++
Sbjct: 110 QSHNDTAVAIAEHIGGSVEEFCEMMTTKANELGAVNTKFETPNGLDSEQHYSTPYDLALI 169

Query: 198 GILLRKNFPQY-------YKYFSIRKFRYRNR-IITNHNKLLNKMHNIDGIKTGYTRNSG 249
           G    KN P++       Y     R+     +  + N N  L++M   +GIKTG+T  +G
Sbjct: 170 GAYALKN-PKFVEIINTPYMNIPTRELEGAGKHQLQNKNGFLHRMPGANGIKTGFTSKAG 228

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           +  V S    +  ++ V +G   S  +++K
Sbjct: 229 YCFVGSATKGNMTLIGVSLGNFGSAGKERK 258


>gi|221218183|ref|ZP_03589649.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 72a]
 gi|221192131|gb|EEE18352.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 72a]
          Length = 405

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 27/216 (12%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGI 132
           PASLTK++T+Y      + + + L + +P+S +A    A  N S ++L++      E+ +
Sbjct: 65  PASLTKIVTIYTALIEAEKRNIKLKSIVPISDSASYYNALPNSSLMFLEKGQIVNFEEIL 124

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             L   S ND S A  EF+ G+   F  LM+     +G+ N  +   SG   +N+I TA 
Sbjct: 125 KGLSVSSGNDSSIAIAEFVVGNLNSFVNLMNINVLNLGLFNMHFVEPSGYSSENKI-TAL 183

Query: 193 DQAILGILLRKNFPQYYKYF----SIRKFRY---RNRIITNHNKLLN-KMHNI------- 237
           D A       K++ + +K+     S++ F Y   RN      +K LN K  N        
Sbjct: 184 DMA----FFVKSYIEKFKFMLNIHSLKYFIYPKSRNLGTALSSKFLNLKQRNANLLIYDY 239

Query: 238 ---DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
              DGIKTGY + SG N+V + +  +  ++AVV+G+
Sbjct: 240 PYSDGIKTGYIKESGLNLVATAKKGERRLIAVVLGV 275


>gi|167748674|ref|ZP_02420801.1| hypothetical protein ANACAC_03448 [Anaerostipes caccae DSM 14662]
 gi|167651988|gb|EDR96117.1| hypothetical protein ANACAC_03448 [Anaerostipes caccae DSM 14662]
          Length = 374

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 104/214 (48%), Gaps = 25/214 (11%)

Query: 72  DEPRYPASLTKMMTLYIIFE-------YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKT 124
           D+  YPAS+TK++T  +  E        ++  +  +N+  P S     +   ++ L +  
Sbjct: 67  DKKSYPASITKILTTLVAIENNDDLYSTVKFSRHAVNSIEPGSTHIGIKAGEEIPLMDVL 126

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
           Y         ++  SAN+      E  SGS +KFA LM+ KAK+IG + + + N +GLH+
Sbjct: 127 Y--------GIMLESANEACNGVAEHTSGSIEKFADLMNKKAKEIGCKGSHFMNPNGLHN 178

Query: 185 KNQITTARDQAIL------GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM---- 234
                TARD A++        + RK     + + S      + R + NH+K++ +     
Sbjct: 179 DKHYVTARDMALITKAALQNPMFRKIACSSHYFMSGTNKEKKGRELWNHHKMVKQTMFLY 238

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             ++G KTGYT  +G  +VT  +  D  +++V++
Sbjct: 239 KGVEGGKTGYTTRAGGTLVTFAKRGDTELISVIL 272


>gi|260590039|ref|ZP_05855952.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
           20583]
 gi|260539551|gb|EEX20120.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
           20583]
          Length = 448

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 127/274 (46%), Gaps = 42/274 (15%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S ++++ +  Q+   K  +E RYPAS TK+MT  II E +     ++     +    A  
Sbjct: 84  SGVLMEASSGQVLFDKSMNEIRYPASTTKVMTALIILENIPDLNKNITFTDIILPDLAPG 143

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           N S +  +     T EQ + A++  SAN+V T     ++GS + F  +M+ KA +IG  N
Sbjct: 144 N-STINAQVGEVLTVEQCLYAIMLASANEVCTQMAVEVAGSVENFTAMMNAKAAEIGCTN 202

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRY-------RNRII 224
           T + NA+GL D N  TTA D   L ++LR+      + K     K+          +R +
Sbjct: 203 THFVNANGLPDPNHYTTAYD---LALILREAVKNEAFCKIAGAAKYTIPPTNKTAASRNM 259

Query: 225 TNHNKLLNKMHNIDG---------IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
            NHN LL     +DG          KTG+T  +   +VT+   +D  ++ VV+      E
Sbjct: 260 ENHNALL-----VDGKYYYEGAIAGKTGHTEAARNTLVTAASREDMTLICVVL----RSE 310

Query: 276 RDQKALELITSFLEKKTLKHQQTHRKDNLSSTSL 309
            D++       F + +TL     +  DN  S SL
Sbjct: 311 NDER-------FTDTRTLFD---YGFDNFHSQSL 334


>gi|149184554|ref|ZP_01862872.1| Serine-type D-Ala-D-Ala carboxypeptidase [Erythrobacter sp. SD-21]
 gi|148831874|gb|EDL50307.1| Serine-type D-Ala-D-Ala carboxypeptidase [Erythrobacter sp. SD-21]
          Length = 388

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 107/222 (48%), Gaps = 6/222 (2%)

Query: 56  SIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQI---PVSKTAA 111
           + + D+   Q+   ++ + R+ PAS+TK+MT ++ FE+++  K+         P    A 
Sbjct: 41  AFLFDLTSGQVLFEREADRRFMPASITKVMTTFLAFEWMEEGKIVPAQSFTIKPEVWRAW 100

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S ++L      T +  +  + T SAND + A  +  +GS +++   M++KA +IGM
Sbjct: 101 NNVGSTMFLPHDARVTVDDLVHGVTTVSANDGAAALADGAAGSIEEWVAAMNSKASEIGM 160

Query: 172 QNTIYKNASGLHDKNQ-ITTARDQAILGILLRKNFPQYYKYF-SIRKFRYRNRIITNHNK 229
            ++ +   +G  D  +   TARD   L   + +  P  Y++F     F Y N    NH+ 
Sbjct: 161 ADSHFGTPNGWMDDGRTFVTARDLTTLATAMIRRHPTKYRHFIGQPAFTYNNITQPNHDP 220

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           +   +   DGIKTG+T  +G+  + S       +V VV   P
Sbjct: 221 ISGVVPGADGIKTGFTNQAGYGFLGSAERNGRRLVMVVAASP 262


>gi|255974260|ref|ZP_05424846.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis T2]
 gi|255967132|gb|EET97754.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis T2]
          Length = 441

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 124/260 (47%), Gaps = 39/260 (15%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE ++  K  ++T   V+ T 
Sbjct: 7   PK-AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTT--VTATQ 63

Query: 111 ATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AFGEFISGSEK-KFAILMS 163
              + SK+Y       T       + +L +I   +++V+T      ISG++   F  LM+
Sbjct: 64  KDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMN 123

Query: 164 NKAKKIGMQNTIYKNASGLH---------------DKNQITTARDQAILGILLRKNFPQY 208
            KA ++GM NT Y N SG                 + + ++TARD A L     KN+P+ 
Sbjct: 124 QKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEI 183

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGIKTGYTRNSGFNIVTSLR 257
            +     K   +  + T + +     +            +DG+KTG +   GFN + +++
Sbjct: 184 LEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVK 241

Query: 258 YKDDPIVAVVMGMPTSQERD 277
             D  ++ V++G+   Q +D
Sbjct: 242 QGDFRLIEVILGVGNWQNQD 261


>gi|229011746|ref|ZP_04168928.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus mycoides DSM 2048]
 gi|228749543|gb|EEL99386.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus mycoides DSM 2048]
          Length = 442

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 124/243 (51%), Gaps = 30/243 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           S+I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S    K 
Sbjct: 48  SAILVEANSGKILYQKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAYKI 107

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A++  SAN  + A  E I+G E  F  +M++K+K+ 
Sbjct: 108 SQDRSLSNVPLENGGSYTVKELYEAMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEF 167

Query: 170 GMQNTIYKNASGL--HD-------------KNQITTARDQAILGILLRKNFPQYYKYFSI 214
           GM+N  + N++GL  HD             KN++ +ARD AIL   L ++FP+      I
Sbjct: 168 GMKNYKFVNSTGLTNHDLKGHHPEGTTPDEKNKM-SARDCAILAQRLIQDFPKILDTAKI 226

Query: 215 RKFRYRNR-----IITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            K  ++        +TN N +L  +      +DG+KTG T  +G     ++      +++
Sbjct: 227 PKKTFQKGGKYPIDMTNFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVEKNGMRLIS 286

Query: 266 VVM 268
           VV+
Sbjct: 287 VVI 289


>gi|229065500|ref|ZP_04200748.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH603]
 gi|228715818|gb|EEL67590.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH603]
          Length = 416

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 124/243 (51%), Gaps = 30/243 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           S+I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S    K 
Sbjct: 22  SAILVEANSGKILYQKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAYKI 81

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A++  SAN  + A  E I+G E  F  +M++K+K+ 
Sbjct: 82  SQDRSLSNVPLENGGSYTVKELYEAMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEF 141

Query: 170 GMQNTIYKNASGL--HD-------------KNQITTARDQAILGILLRKNFPQYYKYFSI 214
           GM+N  + N++GL  HD             KN++ +ARD AIL   L ++FP+      I
Sbjct: 142 GMKNYKFVNSTGLTNHDLKGHHPEGTTPDEKNKM-SARDCAILAQRLIQDFPKILDTAKI 200

Query: 215 RKFRYRNR-----IITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            K  ++        +TN N +L  +      +DG+KTG T  +G     ++      +++
Sbjct: 201 PKKTFQKGGKYPIDMTNFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVEKNGMRLIS 260

Query: 266 VVM 268
           VV+
Sbjct: 261 VVI 263


>gi|311030756|ref|ZP_07708846.1| D-alanyl-D-alanine carboxypeptidase [Bacillus sp. m3-13]
          Length = 384

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 15/203 (7%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MT  +  E   S KL  +  + VS+ A     S LYLK       E  +  L+ 
Sbjct: 61  ASITKVMTAILAIE---SGKL--DEIVKVSEKAVRAEGSSLYLKPGEKIKLEHLVYGLML 115

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAI 196
           RS ND + A  E + GS + F  +M+ KA ++GM NT + N  GL D +N  ++A D A+
Sbjct: 116 RSGNDSAVAIAEHVGGSLEGFVFMMNEKAAELGMTNTEFANPHGLDDHENHYSSAYDMAL 175

Query: 197 LGILLRKNFPQYYKYFSIRKFRY-------RNRIITNHNKLLNKMHN-IDGIKTGYTRNS 248
           L     +N  ++ +    + +R         +R  TN ++L+  M+    G KTGYT+ +
Sbjct: 176 LTRYAMEN-DKFKEVAGTKVYRAPAAPGESWDRSWTNKHRLVTGMYQYATGGKTGYTKRA 234

Query: 249 GFNIVTSLRYKDDPIVAVVMGMP 271
              ++T+   +   ++AV +  P
Sbjct: 235 KRTLITTASKEGLDVIAVTLNGP 257


>gi|212637859|ref|YP_002314379.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus
           WK1]
 gi|212559339|gb|ACJ32394.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus
           WK1]
          Length = 447

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 107/223 (47%), Gaps = 27/223 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEKTYFTTEQGIL 133
           AS+TKMMT Y++ E +   ++  + +  VS+     +  ++ S + L++   +T  +   
Sbjct: 68  ASMTKMMTEYLLLEAIHEGRVKWDQEYTVSEYVYQISQKRDLSNVPLRKDGKYTVRELYE 127

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN------- 186
           A+   SAN  + A  E + GSE  F  +M+ KA+++G+++  + NA+GL++K+       
Sbjct: 128 AMAIYSANGATVAIAEIVGGSETNFVKMMNEKAQELGLKDYKFVNATGLNNKDLGGLHPA 187

Query: 187 -------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM 234
                   + +AR  A L   L   FP+  +  SI +  +R        + N N +L  +
Sbjct: 188 GSGDNEENVMSARAVATLAYHLYHEFPEILETASIPRKYFREGTDDQIKMDNWNWMLPGL 247

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                 +DGIKTGYT  +G+    +        + VVM   T+
Sbjct: 248 VAAYEGVDGIKTGYTEFAGYCFTGTAERNGMRFITVVMNAKTN 290


>gi|255970680|ref|ZP_05421266.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis T1]
 gi|255961698|gb|EET94174.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis T1]
          Length = 441

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 124/260 (47%), Gaps = 39/260 (15%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE ++  K  ++T   V+ T 
Sbjct: 7   PK-AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTT--VTATQ 63

Query: 111 ATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AFGEFISGSEK-KFAILMS 163
              + SK+Y       T       + +L +I   +++V+T      ISG++   F  LM+
Sbjct: 64  KDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMN 123

Query: 164 NKAKKIGMQNTIYKNASGLH---------------DKNQITTARDQAILGILLRKNFPQY 208
            KA ++GM NT Y N SG                 + + ++TARD A L     KN+P+ 
Sbjct: 124 QKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEI 183

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGIKTGYTRNSGFNIVTSLR 257
            +     K   +  + T + +     +            +DG+KTG +   GFN + +++
Sbjct: 184 LEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVK 241

Query: 258 YKDDPIVAVVMGMPTSQERD 277
             D  ++ V++G+   Q +D
Sbjct: 242 QGDFRLIEVILGVGNWQNQD 261


>gi|256761046|ref|ZP_05501626.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis T3]
 gi|256682297|gb|EEU21992.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis T3]
          Length = 441

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 124/260 (47%), Gaps = 39/260 (15%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE ++  K  ++T   V+ T 
Sbjct: 7   PK-AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTT--VTATQ 63

Query: 111 ATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AFGEFISGSEK-KFAILMS 163
              + SK+Y       T       + +L +I   +++V+T      ISG++   F  LM+
Sbjct: 64  KDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMN 123

Query: 164 NKAKKIGMQNTIYKNASGLH---------------DKNQITTARDQAILGILLRKNFPQY 208
            KA ++GM NT Y N SG                 + + ++TARD A L     KN+P+ 
Sbjct: 124 QKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEI 183

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGIKTGYTRNSGFNIVTSLR 257
            +     K   +  + T + +     +            +DG+KTG +   GFN + +++
Sbjct: 184 LEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVK 241

Query: 258 YKDDPIVAVVMGMPTSQERD 277
             D  ++ V++G+   Q +D
Sbjct: 242 QGDFRLIEVILGVGNWQNQD 261


>gi|256843728|ref|ZP_05549216.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus
           125-2-CHN]
 gi|256615148|gb|EEU20349.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus
           125-2-CHN]
          Length = 433

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 121/252 (48%), Gaps = 32/252 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKT 109
           S+I ID +  Q+   K      P AS+TK++T+Y+  + +++ KL  + ++    P+ K 
Sbjct: 51  SAIAIDSDSGQILYAKNATQTLPIASMTKLVTVYLALQAIKNNKLSWDQKVKPTAPIVKV 110

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A     S + LK    +T +Q   A +  SAN  +   G+ I+GS+K F   M  + KK 
Sbjct: 111 ANNAEYSNVPLKMGHSYTIKQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRAQVKKW 170

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++     A GL + N                 +A+D AI+G  L K+FP+      + 
Sbjct: 171 GIEDAKIYTACGLPNGNLGKDAYPGVNKNAENSMSAKDMAIVGQNLIKDFPEVLDTTKLA 230

Query: 216 KFRYRNRI----ITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              +++      + N N +L      ++ + +DG+KTG T  +G   + ++++    ++ 
Sbjct: 231 HLDFKDAGHTTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVQHNGARLIT 290

Query: 266 VVMGMPTSQERD 277
           VVMG   ++ RD
Sbjct: 291 VVMG---ARHRD 299


>gi|322376423|ref|ZP_08050916.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. M334]
 gi|321282230|gb|EFX59237.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. M334]
          Length = 413

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 130/268 (48%), Gaps = 32/268 (11%)

Query: 31  MGKILF--LSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQD--EPRYPASLTK 82
           M KI+   L++ +I  AS + A+        +I ++ N  ++  +++D  +P   AS+TK
Sbjct: 1   MKKIILTLLTLSVIGSASTVAAQDFNIAAKHAIAVEANTGKIL-YEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S    +       S + ++ + Y T EQ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYRLTTNSEASNVPMEARNY-TVEQLLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAHRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G + V +   K   ++ VV+
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVL 266


>gi|307288894|ref|ZP_07568867.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
           TX0109]
 gi|306500166|gb|EFM69510.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
           TX0109]
 gi|315164420|gb|EFU08437.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
           TX1302]
          Length = 493

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 123/260 (47%), Gaps = 39/260 (15%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE ++  K  ++T   V+ T 
Sbjct: 59  PK-AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTT--VTATQ 115

Query: 111 ATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AFGEFISGSEK-KFAILMS 163
              + SK+Y       T       + +L +I   +++V+T      ISG +   F  LM+
Sbjct: 116 KDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGDQPTDFVHLMN 175

Query: 164 NKAKKIGMQNTIYKNASGLH---------------DKNQITTARDQAILGILLRKNFPQY 208
            KA ++GM NT Y N SG                 + + ++TARD A L     KN+P+ 
Sbjct: 176 QKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEI 235

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGIKTGYTRNSGFNIVTSLR 257
            +     K   +  + T + +     +            +DG+KTG +   GFN + +++
Sbjct: 236 LEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVK 293

Query: 258 YKDDPIVAVVMGMPTSQERD 277
             D  ++ V++G+   Q +D
Sbjct: 294 QGDFRLIEVILGVGNWQNQD 313


>gi|269797345|ref|YP_003311245.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Veillonella
           parvula DSM 2008]
 gi|269093974|gb|ACZ23965.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Veillonella
           parvula DSM 2008]
          Length = 285

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 128/273 (46%), Gaps = 28/273 (10%)

Query: 29  QLMGKILFLSIIMIS--MASELHAKP----KYSSIVIDVNKNQMTGFKQ-DEPRYPASLT 81
           +L+  I F+ I+ I   +A   +  P      + ++ID +  ++   K  D+  +PAS T
Sbjct: 14  KLVLAITFIGIVFIGAGVAQAAYITPPSTIGEAVVLIDADTKEILFAKNPDKWMHPASTT 73

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           KM+TL      L+ K   L+    +S  A +   S L ++     T E  +  ++  S N
Sbjct: 74  KMVTL---LTALELKGTQLDELATISSYATSMEESNLGVRVGDQITLEGVLEGMMVASGN 130

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D +    E +SGS  KFA  M+  A K G +N+++ N  GL  K   +TARD A++    
Sbjct: 131 DAAVVVAENVSGSVDKFAKDMTRIAAKAGAKNSVFLNPHGLTQKGHHSTARDLAMIAA-- 188

Query: 202 RKNFPQYYKYFSIR------KFRYRNR----IITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
              +   Y+ F  +      K  Y+NR    I T ++ + NK    +G+KTG+T  +G  
Sbjct: 189 ---YGMKYQMFRDKVANDYYKVPYQNRAPETIRTTNHFIRNKYPGANGLKTGFTNAAGEC 245

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           ++ S   K   ++ V   M     R ++A++ +
Sbjct: 246 LIASATRKGHTMIVV---MLNDDNRWEEAVQFL 275


>gi|291528982|emb|CBK94568.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale M104/1]
          Length = 301

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/125 (40%), Positives = 66/125 (52%), Gaps = 11/125 (8%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP----SKLYLKEKTYFTT 128
           E  YPAS TK++T YII      K   LN  + VS  AA  NP    S   LKE    T 
Sbjct: 73  EKLYPASTTKILTAYIIL-----KNCDLNATVTVSHDAA--NPGHSSSVCGLKEGDVITV 125

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           +  +  L+  S ND + A  E+ SGS ++FA LM++ AK  G  N+ + N SGL D+N  
Sbjct: 126 QDLLYGLLLESGNDAAIALAEYCSGSVEEFAKLMNSTAKSFGATNSSFVNPSGLPDENHY 185

Query: 189 TTARD 193
           TT  D
Sbjct: 186 TTIYD 190


>gi|329576780|gb|EGG58273.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
           TX1467]
          Length = 493

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 122/257 (47%), Gaps = 38/257 (14%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE ++  K  ++T   V+ T    
Sbjct: 61  AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTT--VTATQKDV 118

Query: 114 NPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AFGEFISGSEK-KFAILMSNKA 166
           + SK+Y       T       + +L +I   +++V+T      ISG++   F  LM+ KA
Sbjct: 119 DISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKA 178

Query: 167 KKIGMQNTIYKNASGLH---------------DKNQITTARDQAILGILLRKNFPQYYKY 211
            ++GM NT Y N SG                 + + ++TARD A L     KN+P+  + 
Sbjct: 179 AELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEI 238

Query: 212 FSIRKFRYRNRIITNHNKLLNKMH-----------NIDGIKTGYTRNSGFNIVTSLRYKD 260
               K   +  + T + +     +            +DG+KTG +   GFN + +++  D
Sbjct: 239 --TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGD 296

Query: 261 DPIVAVVMGMPTSQERD 277
             ++ V++G+   Q +D
Sbjct: 297 FRLIEVILGVGNWQNQD 313


>gi|291520325|emb|CBK75546.1| D-alanyl-D-alanine carboxypeptidase [Butyrivibrio fibrisolvens
           16/4]
          Length = 463

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 102/216 (47%), Gaps = 27/216 (12%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQ-NPSKLYLKEKTYFTT 128
           DE  YPAS+TK+MT  I+ E     K  L+  +  S  A   T+   S +        T 
Sbjct: 62  DEVHYPASITKIMTALIVLE-----KCKLDETVKFSAEAVYGTELGSSSIARDVNEEMTV 116

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           EQ +  ++  SAN+ + A GE ++G    F  +M+ KAK++G  NT + N +GL D+   
Sbjct: 117 EQTLYGMMLESANECAYALGEHVAGDIPSFVKMMNEKAKELGCTNTHFNNTNGLPDEEHY 176

Query: 189 TTARDQAILGILLRKNF--PQYYKYFSIRKF-------RYRNRIITNHNKLLNKMHN--- 236
           TTA D A++    R  F  P++ +    + +             + NH+++L+   +   
Sbjct: 177 TTAHDMALIS---RAAFAIPKFAEIVGTKNYTIPPTNKHADPTPLNNHHQMLHYYKSNKY 233

Query: 237 ----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 G KTGYT  +G  +VT  +     ++ VVM
Sbjct: 234 IYDYCLGGKTGYTAVAGATLVTYAKKDGMTLICVVM 269


>gi|116334615|ref|YP_796142.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367]
 gi|116099962|gb|ABJ65111.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367]
          Length = 439

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 34/246 (13%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-- 111
           + I +D    Q+   K  +   P AS+TK++++Y++ + +   KL  + +I V+K  A  
Sbjct: 47  AGIAVDAKTGQILYDKNSDQSLPVASMTKLLSVYLVLDAIHDGKLKWDQKITVNKATAKV 106

Query: 112 --TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
               N S + L+    +T +    A +  SAN    A G  ++GS   F   M  +AK +
Sbjct: 107 AQNTNLSNVPLRAGHSYTVKSLYQASLIYSANGAIEALGTAVAGSPHAFVTKMRAEAKTL 166

Query: 170 GMQNTIYKNASGLHDK---------------NQITTARDQAILGILLRKNFPQYYKYFSI 214
           GM N    NA GL +K               N+ + A DQA L + L   +P+  K  SI
Sbjct: 167 GMTNAKIYNACGLTNKQVGKLGYSNVKGSTENEWSAA-DQAKLAVALVNKYPEVLKTTSI 225

Query: 215 RKFRYRNRI-----ITNHNKLL-------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           +K  +         + N N +L       +K+H +DG+KTG +  +G N   +     + 
Sbjct: 226 KKMWFEKGTSDATKMENWNWMLKGLSASYSKLH-VDGLKTGTSDAAGANFTGTANNNGNR 284

Query: 263 IVAVVM 268
           I+ VV+
Sbjct: 285 IITVVL 290


>gi|118477954|ref|YP_895105.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
           Hakam]
 gi|118417179|gb|ABK85598.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
           Hakam]
          Length = 338

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 120/229 (52%), Gaps = 17/229 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S+I+ID N  ++   K +E     A+L+K+MT YI+ E L    + L+  + +S     A
Sbjct: 37  SAILIDANSGEVVYKKNEETSIQSATLSKLMTEYIVLEQLDKGNIQLDEVVKISNEVFRA 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             +P ++  K+KT  T    + AL+    N  + A  E I+G+E  F  LM+ KAK++ +
Sbjct: 97  ETSPIQVTSKDKT--TVRDLLHALLLTGNNRSTLALAEHIAGNEDNFTQLMNEKAKQLKL 154

Query: 172 QNTI-YKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIIT 225
                + NA+G++   +K   TTA +   L   L  +FP        +  +F +++  + 
Sbjct: 155 SQPFPFLNATGMNNGTNKLSTTTAIEVGKLATRLVTDFPDVLNVTKLTSYQFTFKDTKVF 214

Query: 226 NHNKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N NK+   LN   K+  +DG++T ++ NS ++ V++ +  D  +++V++
Sbjct: 215 NTNKMIYSLNKNIKLQGVDGLQTSFSTNSNYSFVSTAKRGDTRLISVIL 263


>gi|219684372|ref|ZP_03539316.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia garinii PBr]
 gi|219672361|gb|EED29414.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia garinii PBr]
          Length = 392

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 108/222 (48%), Gaps = 27/222 (12%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGI 132
           PASLTK++T+Y      + + + L + +P+S  A    A  N S ++L++      E+ +
Sbjct: 56  PASLTKIVTIYTALIEAEKRNIKLKSIVPISDAASYYNAPLNSSLMFLEKGQIVNFEEIL 115

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             L   S ND S A  EF+ G    F  LM+     +G+ N  +   SG  ++N+I TA 
Sbjct: 116 KGLSVSSGNDASIAIAEFVVGDLNSFVNLMNINVLNLGLLNMHFVEPSGYSNENKI-TAL 174

Query: 193 DQAILGILLRKNFPQYYKYF----SIRKFRY---RNRIITNHNKLLN---KMHNI----- 237
           D A       K++ + +K+     S++ F Y   +N   T  +K LN   K  N+     
Sbjct: 175 DMA----FFVKSYIEKFKFMLNIHSLKYFVYPKSKNLGTTLSSKFLNLKQKNANLLISDY 230

Query: 238 ---DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
              DG+KTGY + SG N+V + +     ++AVV+G+     R
Sbjct: 231 PYSDGLKTGYIKESGLNLVATAQKYGRRLIAVVLGVEKGINR 272


>gi|163791201|ref|ZP_02185618.1| hypothetical protein CAT7_03879 [Carnobacterium sp. AT7]
 gi|159873532|gb|EDP67619.1| hypothetical protein CAT7_03879 [Carnobacterium sp. AT7]
          Length = 440

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 107/230 (46%), Gaps = 27/230 (11%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQN--PSKLYLKEKTYFT 127
           DE    AS+TKM+T YI+ E +++  L  + QI +S+ A   +QN   S + L+    ++
Sbjct: 62  DEKLGIASMTKMITEYILLETIKNGDLAWDDQIEISEYAHEISQNYELSNVPLRIDDTYS 121

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----- 182
            E+   A+   SAN  + A  E I+G EK F  +M  K +  G+ N    N +GL     
Sbjct: 122 VEELYQAMAIYSANGATIALAEHIAGDEKAFVDMMHEKVESWGITNYEIYNTTGLSNFDL 181

Query: 183 ---------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHN 228
                     +     TAR  AI+   L  +FP   K  SI K  +R        +TN N
Sbjct: 182 NGNIYPGSTENSENSMTARGMAIIAQHLITDFPDVLKTSSISKKTFREGTSDAIEMTNFN 241

Query: 229 KLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
            +L    ++  N+DG+KTG T  +G ++  +   +   I+ +VM     Q
Sbjct: 242 WMLPGLDHERENVDGLKTGTTDFAGASMTGTAEQEGMRIITIVMNATNGQ 291


>gi|257417256|ref|ZP_05594250.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis AR01/DG]
 gi|257159084|gb|EEU89044.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis ARO1/DG]
          Length = 475

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 131/277 (47%), Gaps = 41/277 (14%)

Query: 37  LSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
           ++ I   M + L A   PK ++IV+D +  ++   +Q +  + PAS+ K+MT+Y+ FE +
Sbjct: 24  ITAIAKKMGTTLKADGIPK-AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAM 82

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE-----QGILALITRSANDVST-AF 147
           +  K  ++T   V+ T    + SK+Y       T       + +L +I   +++V+T   
Sbjct: 83  EQGKFTMDTT--VTATQKDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLML 140

Query: 148 GEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLH---------------DKNQITTA 191
              ISG++   F  LM+ KA ++GM NT Y N SG                 + + ++TA
Sbjct: 141 ANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTA 200

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-----------NIDGI 240
           RD A L     KN+P+  +     K   +  + T + +     +            +DG+
Sbjct: 201 RDLASLTYHFLKNYPKILEI--TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGL 258

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           KTG +   GFN + +++  D  ++ V++G+   Q +D
Sbjct: 259 KTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQD 295


>gi|205373775|ref|ZP_03226577.1| D-alanyl-D-alanine carboxypeptidase [Bacillus coahuilensis m4-4]
          Length = 318

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 119/254 (46%), Gaps = 25/254 (9%)

Query: 30  LMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMT 85
           L+G + F  +       ++ A P    +S+I++D    ++   K  E +   AS+TK+MT
Sbjct: 15  LLGSVCFRPL-------DVQAAPGVSAHSAILMDQETGRVLYEKNAEQQMKIASITKIMT 67

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
             +  E        L   + VS  AA    S LYL        E  +  L+ RS ND + 
Sbjct: 68  AIVAIE-----SDDLQDTVTVSSNAAGTEGSSLYLVAGQKMKLEDLLYGLMLRSGNDSAV 122

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-QITTARDQAILGILLRKN 204
           A  E + GS + F  LM+ KA++IGM+NT + N  GL D +  ++T+ D A+L +    N
Sbjct: 123 AIAEHVGGSLEGFVYLMNQKAEEIGMENTNFDNPHGLDDSDTHLSTSYDMALL-MKYSMN 181

Query: 205 FPQYYKYFSIRKFRYRN------RIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              + +  S    +  N          N N+LL +++    G KTGYT+ +   +VT+  
Sbjct: 182 NETFQEISSTEVHKAPNPNGDWDYSWHNKNRLLTQLYEYCTGGKTGYTKLAKRTLVTTAE 241

Query: 258 YKDDPIVAVVMGMP 271
              + ++AV +  P
Sbjct: 242 KDGEKLIAVTLNGP 255


>gi|326791358|ref|YP_004309179.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
           DSM 5427]
 gi|326542122|gb|ADZ83981.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
           DSM 5427]
          Length = 382

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 14/205 (6%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           EP   AS TK+MT  +  E     K +L   + +SK A++  P KL+LK          +
Sbjct: 53  EPLAMASTTKIMTCILAIE-----KGNLLDVVTISKRASSAPPVKLHLKVGEKQRLGDLL 107

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
            AL+ +S ND + A  E I+GS + F   M+ KAK+IG ++T +K  +GL  +    +A 
Sbjct: 108 YALMLQSDNDAAVAVAEHIAGSVEAFCEQMTEKAKEIGAEHTSFKTPNGLDAEGHYASAY 167

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRY--------RNRIITNHNKLLNKMHNIDGIKTGY 244
           D  ++G    KN P++ K  +    +             + N N+        +GIKTG+
Sbjct: 168 DMTLIGAYALKN-PEFVKIITTATIQIPTIPTEGSHTYGLQNKNRFFYSYEGANGIKTGF 226

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMG 269
           T  +G   V +    D  ++   +G
Sbjct: 227 TNKAGHCFVGAAYKNDMQLIGAALG 251


>gi|256545481|ref|ZP_05472843.1| D-alanyl-D-alanine carboxypeptidase [Anaerococcus vaginalis ATCC
           51170]
 gi|256398877|gb|EEU12492.1| D-alanyl-D-alanine carboxypeptidase [Anaerococcus vaginalis ATCC
           51170]
          Length = 407

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 116/224 (51%), Gaps = 15/224 (6%)

Query: 76  YP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-QNP--SKLYLKEKTYFTTEQG 131
           YP AS++K+MT  +  + ++S K+  +T++  +K A     P  S + +KE   +T ++ 
Sbjct: 65  YPIASMSKLMTFLLARDAIESGKISFDTKVKGTKEAEDLTGPEYSAMGIKEGEQYTIKEL 124

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---DKNQI 188
           +  L+  S ND +      ISGSE  FA  M+ KA+++ +++  Y NASG++   DK   
Sbjct: 125 LTGLMVVSGNDCANLLASTISGSEANFANEMNKKAQELNLKSQKYYNASGINTEDDKQNS 184

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN--KLLNKMHNIDGIKTGYTR 246
           ++A+D   L  ++   +P   +Y  I       + I   +   L +++  +DG+KTG T 
Sbjct: 185 SSAKDLFELTRIIVDKYPDILEYSKINGIDDDKKDIHKKSTIPLRDEIKGVDGLKTGTTE 244

Query: 247 NSGFNIVTSLRY-KDDP-----IVAVVMGMPTSQERDQKALELI 284
            +G  + T++   K DP      + +VMG   ++ R+    +LI
Sbjct: 245 EAGHCLTTTIDMNKFDPKNEFRAIGIVMGAEENEFRNSAMTDLI 288


>gi|291524841|emb|CBK90428.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale DSM 17629]
          Length = 301

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 68/129 (52%), Gaps = 11/129 (8%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP----SKLYLKEKTYFTT 128
           E  YPAS TK++T YII      K   LN  + VS  AA  NP    S   LKE    T 
Sbjct: 73  EKLYPASTTKILTAYIIL-----KNCDLNATVTVSHDAA--NPGHSSSVCGLKEGDVITV 125

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           +  +  L+  S ND + A  E+ SGS ++FA LM++ AK  G  N+ + N SGL D+N  
Sbjct: 126 QDLLYGLLLESGNDAAIALAEYCSGSVEEFAKLMNSTAKSFGATNSNFVNPSGLPDENHY 185

Query: 189 TTARDQAIL 197
           TT  D  ++
Sbjct: 186 TTIYDMYLI 194


>gi|294852417|ref|ZP_06793090.1| predicted protein [Brucella sp. NVSL 07-0026]
 gi|294821006|gb|EFG38005.1| predicted protein [Brucella sp. NVSL 07-0026]
          Length = 258

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 72/127 (56%), Gaps = 5/127 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYF 126
           D+P  PASL K+MT  ++FE L+  +  L T  PVS+ A     A    S ++ + K+  
Sbjct: 59  DKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEYAWRTGGAPSGTSTMFARIKSTP 118

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           T    +  +I +SAND +    E ++GSE+ FA  M+ +AK++G+ ++ + N++GL    
Sbjct: 119 TVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQRAKELGLSSSKFVNSTGLPAAG 178

Query: 187 QITTARD 193
           Q+ T  D
Sbjct: 179 QVVTLED 185


>gi|304316607|ref|YP_003851752.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778109|gb|ADL68668.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 418

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 100/204 (49%), Gaps = 15/204 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPAS TK++T  I  E     K  LN  + V+      + + +YL      T EQ + A+
Sbjct: 56  YPASTTKILTAIIAIE-----KGKLNDVVTVNDDVKNIDGNSIYLVPGEKLTLEQLLYAM 110

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  SAND + A  + I GS + FA +M+ KAK+IG  ++ + N +GL D N  +T  D A
Sbjct: 111 LLESANDAAIAVADHIGGSVQAFADMMNKKAKEIGANDSHFVNPNGLPDNNHYSTPYDMA 170

Query: 196 ILGILLRKN--FPQ-----YYKYFSIRKF-RYRNRIITNHNKLLNKMH--NIDGIKTGYT 245
           ++      N  F +     +Y+     KF + R+  I+N     +  H    DG+KTGYT
Sbjct: 171 LIARYAMGNATFRKIVSTIHYQILPTNKFDKPRDLWISNRLIKPSSFHYDGADGVKTGYT 230

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMG 269
             +    V S       +++V+MG
Sbjct: 231 IAANQVFVGSATRNGHRLISVIMG 254


>gi|291540307|emb|CBL13418.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis XB6B4]
          Length = 299

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 95/215 (44%), Gaps = 29/215 (13%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKE-KTYFTTEQG 131
           E  YPAS+TK+MT  I  E        LN  +  S  A          ++     T EQ 
Sbjct: 47  EAHYPASITKIMTTLIALE-----NSDLNDIVTFSDAAIDNTEGSGIARDYGEQMTMEQC 101

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + A++  SAN+ + A  E + G+ + F  +M+ KAK++G QNT + N  GLHD+N  T  
Sbjct: 102 LYAVMLASANECAYAVAEHVGGTIENFVAMMNEKAKELGCQNTHFANPHGLHDENHYTCC 161

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----------ITNHNKLL-----NK-- 233
            D A++     +N     + F I     R  I           + NHN++L     NK  
Sbjct: 162 YDMALIARAAYQN-----ETFRIIVGTARYTIPPTNKHAEQTDLQNHNEMLYPFQTNKYV 216

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                G KTGYT  +   +VT        ++ VVM
Sbjct: 217 YDGCTGGKTGYTNAANSTLVTYAERDGMTLICVVM 251


>gi|219685272|ref|ZP_03540092.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia garinii Far04]
 gi|219673368|gb|EED30387.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia garinii Far04]
          Length = 392

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 109/222 (49%), Gaps = 27/222 (12%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGI 132
           PASLTK++T+Y      + + + L + +P+S +A    A  N S ++L++      E+ +
Sbjct: 56  PASLTKIVTIYTALIEAEKRNIKLKSIVPISDSASYYNAPLNSSLMFLEKGQIVNFEEIL 115

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             L   S ND S A  EF+ G    F  LM+     +G+ N  +   SG  ++N+I TA 
Sbjct: 116 KGLSVSSGNDASIAIAEFVVGDLNSFVNLMNINVLNLGLLNMHFVEPSGYSNENKI-TAL 174

Query: 193 DQAILGILLRKNFPQYYKYF----SIRKFRY---RNRIITNHNKLLN---KMHNI----- 237
           D +       K++ + +K+     S++ F Y   +N   T  +K LN   K  N+     
Sbjct: 175 DMS----FFVKSYIEKFKFMLNIHSLKYFVYPKSKNLGTTLSSKFLNLKQKNANLLISDY 230

Query: 238 ---DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
              DG+KTGY + SG N+V + +     ++AVV+G+     R
Sbjct: 231 PYSDGLKTGYIKESGLNLVATAQKDGRRLIAVVLGVEKGINR 272


>gi|150390086|ref|YP_001320135.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus
           metalliredigens QYMF]
 gi|149949948|gb|ABR48476.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus
           metalliredigens QYMF]
          Length = 441

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 29/220 (13%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           E  YPAS TK +T  ++ E      L L+  I V +       S +YL +   FT  + +
Sbjct: 55  EITYPASTTKALTAILVLE-----NLELDEVITVEEDMFVGG-SGMYLLKGEAFTVNELL 108

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             L+ RSANDV+      ISGS + FA LM+ +AK++G  N+ + N  GL D+  +TTA 
Sbjct: 109 HVLMIRSANDVAELLATHISGSVEAFADLMNRRAKELGALNSHFTNPHGLPDEEHVTTAY 168

Query: 193 DQAILG-----ILLRKNFPQYYKY------FS--IRKFRYRNRIITN---HNKLL--NKM 234
           D A++G       + +      +Y      F+   R +R  NR +      N++L   + 
Sbjct: 169 DLAMIGKHAITFDVLREIAGTVRYDVEPTEFTPETRYYRNTNRFLWGTGSGNQILYRGQY 228

Query: 235 HNI-----DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            NI     +G+KTG+T  +   ++ S    D   ++VV+G
Sbjct: 229 QNIKYDIVEGLKTGFTNAAQNCLIASAIQGDQRFISVVLG 268


>gi|228997557|ref|ZP_04157170.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
 gi|228762185|gb|EEM11118.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
          Length = 329

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 118/226 (52%), Gaps = 12/226 (5%)

Query: 55  SSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+ID    ++   K +D P   ASL+KMMT YI+ E +Q  K+  + ++ +S ++   
Sbjct: 30  SAILIDATSEEIVYKKNEDTPFSSASLSKMMTEYIVLEQIQKGKIKWDDRVKISNSSIQM 89

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             + + +  +   T      A++  S N  +    E IS +E+ F  LM+ KA ++G+ N
Sbjct: 90  EGNNIDITFEDQITIRDLFHAMVLASDNSAAVFLAEHISKNEQDFTNLMNEKATQLGLSN 149

Query: 174 -TIYKNASGLHDKNQIT--TARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIITNHN 228
            T + NA+G+ +K + +  TA D + L   L  ++P   +   +   +F +++  + N N
Sbjct: 150 KTYFANATGVINKQEESKITALDASKLAQHLITDYPMILEITQLTSYQFTFKDIHVFNTN 209

Query: 229 KLLN------KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           K+L       K   +DG++T ++  +G++  ++ +  +   +++VM
Sbjct: 210 KMLYSLDSKIKFKGVDGLQTSFSNPAGYSFASTAKQGNKRFISIVM 255


>gi|229005188|ref|ZP_04162908.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4]
 gi|228756048|gb|EEM05373.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4]
          Length = 329

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 118/226 (52%), Gaps = 12/226 (5%)

Query: 55  SSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+ID    ++   K +D P   ASL+KMMT YI+ E +Q  K+  + ++ +S ++   
Sbjct: 30  SAILIDATSEEIVYKKNEDTPFSSASLSKMMTEYIVLEQIQKGKIKWDDRVKISNSSIQM 89

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             + + +  +   T      A++  S N  +    E IS +E+ F  LM+ KA ++G+ N
Sbjct: 90  EGNNIDITFEDQITIRDLFHAMVLASDNSAAVFLAEHISKNEQDFTNLMNEKATQLGLSN 149

Query: 174 -TIYKNASGLHDKNQIT--TARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIITNHN 228
            T + NA+G+ +K + +  TA D + L   L  ++P   +   +   +F +++  + N N
Sbjct: 150 KTYFANATGVINKQEESKITALDASKLAQHLITDYPMILEITQLTSYQFTFKDIHVFNTN 209

Query: 229 KLLN------KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           K+L       K   +DG++T ++  +G++  ++ +  +   +++VM
Sbjct: 210 KMLYSLDSKIKFKGVDGLQTSFSNPAGYSFASTAKQGNKRFISIVM 255


>gi|229100275|ref|ZP_04231166.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-29]
 gi|228683170|gb|EEL37157.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-29]
          Length = 453

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 130/268 (48%), Gaps = 35/268 (13%)

Query: 35  LFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           LF SI++ S  +     P       S+I+I+ N  ++   K  DE    AS+TKMM+ Y+
Sbjct: 34  LFCSIVVTSGRASAETVPAIDVEAGSAILIEANSGKILYQKNADESLAIASMTKMMSEYL 93

Query: 89  IFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           + E +   KL  + ++ +S    K +  ++ S + L+    +T ++   A+   SAN  +
Sbjct: 94  VHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGAT 153

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG---------------LHDKNQIT 189
            A  E I+G E  F  +M++K+K+ GM++  + N++G               L +KN++ 
Sbjct: 154 IALVEEIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHPEGTTLDEKNKM- 212

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----IITNHNKLLNKM----HNIDGI 240
           +ARD AIL   L ++FPQ      I K  ++        + N N +L  +      +DG+
Sbjct: 213 SARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGL 272

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G     ++      +++VV+
Sbjct: 273 KTGTTPEAGDCFTGTVERNGMRLISVVI 300


>gi|229161434|ref|ZP_04289415.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus R309803]
 gi|228621971|gb|EEK78816.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus R309803]
          Length = 416

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 125/243 (51%), Gaps = 30/243 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           S+I+++ N  ++   K  DE    AS+TKMM+ Y++ E +++ KL  + ++ +S    K 
Sbjct: 22  SAILVEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVENGKLKWDQKVKISEYAYKI 81

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ 
Sbjct: 82  SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIAGKEADFVKMMNDKSKEF 141

Query: 170 GMQNTIYKNASGL--HD-------------KNQITTARDQAILGILLRKNFPQYYKYFSI 214
           GM+N  + N++GL  HD             KN++ +ARD AIL   L ++FP+      I
Sbjct: 142 GMKNYKFVNSTGLTNHDLKGHHPEGTTPDEKNKM-SARDCAILAQRLIQDFPKILDTAKI 200

Query: 215 RKFRYRNR-----IITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            K  ++        +TN N +L  +      +DG+KTG T  +G     ++      +++
Sbjct: 201 PKKTFQQGGKYPIDMTNFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLIS 260

Query: 266 VVM 268
           VV+
Sbjct: 261 VVI 263


>gi|225570667|ref|ZP_03779690.1| hypothetical protein CLOHYLEM_06767 [Clostridium hylemonae DSM
           15053]
 gi|225160494|gb|EEG73113.1| hypothetical protein CLOHYLEM_06767 [Clostridium hylemonae DSM
           15053]
          Length = 405

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 22/226 (9%)

Query: 46  SELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           S+L+A+   S++++D +  ++  G  +D  R  AS TK+MT  +  E +Q  ++      
Sbjct: 36  SQLYAR---SAVLMDADSGRVLFGKDEDVVRPMASTTKIMTCILALENMQEDQV-----T 87

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
             S  AA+Q   +L +K K  F  +  + +L+  S ND +    E I+GS + FA +M+ 
Sbjct: 88  AASDHAASQPKVRLGVKGKEEFRIKDLLYSLMLESHNDSAVVIAEGIAGSVEAFAGMMNE 147

Query: 165 KAKKIGMQNTIYKNASGLHDKNQ----ITTARDQAILGILLRKNFPQYYKYFSIRKFR-- 218
           KA ++G  +T +   +GL   ++     TTARD A +     K+ P+  ++  + + +  
Sbjct: 148 KAAELGCSDTYFVTPNGLDGYDEGGTHSTTARDLAAIMKYCIKDSPKKEQFLEVTRTKDY 207

Query: 219 -------YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
                   R+   +NHN  L  M      KTG+T ++G+  V +L 
Sbjct: 208 SFTNVKGDRSFSCSNHNAFLTMMDGALSGKTGFTADAGYCYVGALE 253


>gi|260103243|ref|ZP_05753480.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus helveticus
           DSM 20075]
 gi|111610195|gb|ABH11586.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus helveticus
           CNRZ32]
 gi|260082956|gb|EEW67076.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus helveticus
           DSM 20075]
          Length = 431

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 118/244 (48%), Gaps = 29/244 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKT 109
           S+I ID N  Q+   K  +   P AS+TK+MT+Y+    ++++KL  + ++     + K 
Sbjct: 49  SAIAIDSNSGQVLYAKNADKTLPIASMTKLMTVYLTLNAIKNQKLAWDQKVKPTASIVKV 108

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A     S + LK    +T +Q   A +  SAN  +   G+ I+GS+K F   M ++ KK 
Sbjct: 109 ANNAEYSNVPLKMGHSYTIKQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRSQVKKW 168

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++     A GL + N                 +A+D AI+G  L ++FP+      + 
Sbjct: 169 GIKDAKIYTACGLPNGNVGKDAYPGVNKNAENSMSAKDMAIVGQNLIQDFPEVLDTTKLA 228

Query: 216 KFRYRNRI----ITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              ++++     + N N +L      ++ + +DG+KTG T  +G   + ++ +    ++ 
Sbjct: 229 HLDFKDQGHTTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVNHAGARLIT 288

Query: 266 VVMG 269
           VVMG
Sbjct: 289 VVMG 292


>gi|291537069|emb|CBL10181.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis M50/1]
          Length = 468

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 95/215 (44%), Gaps = 29/215 (13%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKE-KTYFTTEQG 131
           E  YPAS+TK+MT  I  E        LN  +  S  A          ++     T EQ 
Sbjct: 67  EAHYPASITKIMTTLIALE-----NSDLNDIVTFSDAAIDNTEGSGIARDYGEQMTMEQC 121

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + A++  SAN+ + A  E + G+ + F  +M+ KAK++G QNT + N  GLHD+N  T  
Sbjct: 122 LYAVMLASANECAYAVAEHVGGTIENFVAMMNEKAKELGCQNTHFANPHGLHDENHYTCC 181

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----------ITNHNKLL-----NK-- 233
            D A++     +N     + F I     R  I           + NHN++L     NK  
Sbjct: 182 YDMALIARAAYQN-----ETFRIIVGTARYTIPPTNKHAEQTDLQNHNEMLYPFQTNKYV 236

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                G KTGYT  +   +VT        ++ VVM
Sbjct: 237 YDGCTGGKTGYTNAANSTLVTYAERDGMTLICVVM 271


>gi|154483607|ref|ZP_02026055.1| hypothetical protein EUBVEN_01311 [Eubacterium ventriosum ATCC
           27560]
 gi|149735517|gb|EDM51403.1| hypothetical protein EUBVEN_01311 [Eubacterium ventriosum ATCC
           27560]
          Length = 324

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 107/215 (49%), Gaps = 17/215 (7%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK+MT  +    L+S K+  N  I  S  A +    K+Y K+   +  +  + A++ 
Sbjct: 4   ASTTKIMTCIVA---LESGKM--NQIIKASSKAVSMPKVKMYAKKGEQYYLKDLLYAMML 58

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND +    E I GS+++FA +M+ KAK+IG +NT +   +GL   N  +TA D A++
Sbjct: 59  ESFNDAAMIVAEGIGGSQEEFAKMMNKKAKEIGAKNTNFVTPNGLDADNHYSTAYDMALI 118

Query: 198 GILLRKNFPQY-----YKYFSIRKFRYRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFN 251
           G    KN  Q+      K +S      +  I  N+  +   M N   GIKTG+T  +G+ 
Sbjct: 119 GAYATKN-KQFNEITNTKSYSFTDVSAKRSITVNNKDMFLAMDNEAIGIKTGFTGKAGYC 177

Query: 252 IVTSLRYKDDPIVAVVM--GMPTSQE---RDQKAL 281
            V +++      V+ V+  G P ++    +D  AL
Sbjct: 178 FVGAVKSNGRHFVSCVLACGWPPNKSYKWKDTTAL 212


>gi|261222159|ref|ZP_05936440.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94]
 gi|265998124|ref|ZP_06110681.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1]
 gi|260920743|gb|EEX87396.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94]
 gi|262552592|gb|EEZ08582.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1]
          Length = 199

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 72/127 (56%), Gaps = 5/127 (3%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYF 126
           D+P  PASL K+MT  ++FE L+  +  L T  PVS+ A     A    S ++ + K+  
Sbjct: 59  DKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEYAWRTGGAPSGTSTMFARIKSTP 118

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           T    +  +I +SAND +    E ++GSE+ FA  M+ +AK++G+ ++ + N++GL    
Sbjct: 119 TVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQRAKELGLSSSKFVNSTGLPAAG 178

Query: 187 QITTARD 193
           Q+ T  D
Sbjct: 179 QVVTLED 185


>gi|302672276|ref|YP_003832236.1| D-alanyl-D-alanine carboxypeptidase DacA3 [Butyrivibrio
           proteoclasticus B316]
 gi|302396749|gb|ADL35654.1| D-alanyl-D-alanine carboxypeptidase DacA3 [Butyrivibrio
           proteoclasticus B316]
          Length = 488

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 22/229 (9%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++IV+D +   +   K   E  YPAS TK+MT  +  E        L+ +I  S  A   
Sbjct: 77  AAIVMDASTGTILYAKNIHEELYPASTTKIMTCLLAVE-----NASLSDKITFSNEAVFS 131

Query: 114 NP---SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            P   S + +      T EQ +  ++  SAN+V+ A  E +SGS   F  LM+ +A ++G
Sbjct: 132 VPRDGSSIGMDVGESITLEQALFGIMVGSANEVANAVAEHVSGSIDAFVNLMNQRASELG 191

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILG------ILLRK--NFPQYYKYFSIRKFRYRNR 222
             NT + N +GL D +  T+A D A++        LL K  N P+Y  +F+    +  + 
Sbjct: 192 CTNTHFNNTNGLQDDDHYTSAYDLALIARAFFNNELLCKVGNTPRY--HFTETSTQPDDF 249

Query: 223 IITNHNKLLNKMHNIDGI---KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            + N +KL+      DGI   KTGYT  +   +VT        ++ V++
Sbjct: 250 YLNNKHKLITGEVKFDGIIGGKTGYTDQARETLVTCAERDGVKLICVIL 298


>gi|323694553|ref|ZP_08108719.1| hypothetical protein HMPREF9475_03583 [Clostridium symbiosum
           WAL-14673]
 gi|323501321|gb|EGB17217.1| hypothetical protein HMPREF9475_03583 [Clostridium symbiosum
           WAL-14673]
          Length = 353

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 98/214 (45%), Gaps = 23/214 (10%)

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSA 140
           MT  ++ E     +  L+  +  S+ A T        L +K    F+ +  + AL+ +SA
Sbjct: 1   MTALLVLE-----RSSLDDTVTFSENAVTNLEAGAVTLKIKAGDKFSVKDCMYALLLKSA 55

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           N+V+    E ++GS   FA LM+ KA  +G  NT + N +GL+D N  TTARD A++   
Sbjct: 56  NEVANGLAEHVAGSVSGFADLMNQKAASLGCTNTHFVNPNGLNDSNHYTTARDMALIAKA 115

Query: 201 LRKN-------------FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRN 247
             +N             FP      ++RK    ++++   N        I G KTGYT  
Sbjct: 116 AFENQTLSQIASTVSYDFPATASVPTVRKLTMGHKMVNPANG--EYYQGIVGGKTGYTSL 173

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           +G  +VT        ++AVV+    +   D KAL
Sbjct: 174 AGNTLVTCAERDGKRLIAVVLKSKQTHYTDTKAL 207


>gi|161507933|ref|YP_001577897.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus helveticus DPC
           4571]
 gi|160348922|gb|ABX27596.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus helveticus DPC
           4571]
          Length = 431

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 118/244 (48%), Gaps = 29/244 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKT 109
           S+I ID N  Q+   K  +   P AS+TK+MT+Y+    ++++KL  + ++     + K 
Sbjct: 49  SAIAIDSNSGQVLYAKNADKTLPIASMTKLMTVYLTLNAIKNQKLAWDQKVKPTASIVKV 108

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A     S + LK    +T +Q   A +  SAN  +   G+ I+GS+K F   M ++ KK 
Sbjct: 109 ANNAEYSNVPLKMGHSYTIKQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRSQVKKW 168

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++     A GL + N                 +A+D AI+G  L ++FP+      + 
Sbjct: 169 GIKDAKIYTACGLPNGNVGKDAYPGVNKNAENSMSAKDMAIVGQNLIQDFPEVLDTTKLA 228

Query: 216 KFRYRNRI----ITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              ++++     + N N +L      ++ + +DG+KTG T  +G   + ++ +    ++ 
Sbjct: 229 HLDFKDQGHTTKMANFNWMLKGLSQYDQTYPVDGLKTGTTDAAGACFIGTVNHAGARLIT 288

Query: 266 VVMG 269
           VVMG
Sbjct: 289 VVMG 292


>gi|328464600|gb|EGF35965.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus helveticus MTCC
           5463]
          Length = 431

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 118/244 (48%), Gaps = 29/244 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKT 109
           S+I ID N  Q+   K  +   P AS+TK+MT+Y+    ++++KL  + ++     + K 
Sbjct: 49  SAIAIDSNSGQVLYAKNADKTLPIASMTKLMTVYLTLNAIKNQKLAWDQKVKPTASIVKV 108

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A     S + LK    +T +Q   A +  SAN  +   G+ I+GS+K F   M ++ KK 
Sbjct: 109 ANNAEYSNVPLKMGHSYTIKQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRSQVKKW 168

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++     A GL + N                 +A+D AI+G  L ++FP+      + 
Sbjct: 169 GIKDAKIYTACGLPNGNVGKDAYPGVNKNAENSMSAKDMAIVGQNLIQDFPEVLDTTKLA 228

Query: 216 KFRYRNRI----ITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              ++++     + N N +L      ++ + +DG+KTG T  +G   + ++ +    ++ 
Sbjct: 229 HLDFKDQGHTTKMANFNWMLKGLSQYDQTYPVDGLKTGTTDAAGACFIGTVNHAGARLIT 288

Query: 266 VVMG 269
           VVMG
Sbjct: 289 VVMG 292


>gi|240144614|ref|ZP_04743215.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis
           L1-82]
 gi|257203330|gb|EEV01615.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis
           L1-82]
          Length = 468

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 95/215 (44%), Gaps = 29/215 (13%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKE-KTYFTTEQG 131
           E  YPAS+TK+MT  I  E        LN  +  S  A          ++     T EQ 
Sbjct: 67  EAHYPASITKIMTTLIALE-----NSDLNDIVTFSDAAIDNTEGSGIARDYGEQMTMEQC 121

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + A++  SAN+ + A  E + G+ + F  +M+ KAK++G QNT + N  GLHD+N  T  
Sbjct: 122 LYAVMLASANECAYAVAEHVGGTIENFVAMMNEKAKELGCQNTHFANPHGLHDENHYTCC 181

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----------ITNHNKLL-----NK-- 233
            D A++     +N     + F I     R  I           + NHN++L     NK  
Sbjct: 182 YDMALIARAAYQN-----ETFRIIVGTARYTIPPTNKHAEQTDLQNHNEMLYPFQTNKYV 236

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                G KTGYT  +   +VT        ++ VVM
Sbjct: 237 YDGCTGGKTGYTNAANSTLVTYAERDGMTLICVVM 271


>gi|323466012|gb|ADX69699.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus helveticus H10]
          Length = 457

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 118/244 (48%), Gaps = 29/244 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKT 109
           S+I ID N  Q+   K  +   P AS+TK+MT+Y+    ++++KL  + ++     + K 
Sbjct: 75  SAIAIDSNSGQVLYAKNADKTLPIASMTKLMTVYLTLNAIKNQKLAWDQKVKPTASIVKV 134

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A     S + LK    +T +Q   A +  SAN  +   G+ I+GS+K F   M ++ KK 
Sbjct: 135 ANNAEYSNVPLKMGHSYTIKQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRSQVKKW 194

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++     A GL + N                 +A+D AI+G  L ++FP+      + 
Sbjct: 195 GIKDAKIYTACGLPNGNVGKDAYPGVNKNAENSMSAKDMAIVGQNLIQDFPEVLDTTKLA 254

Query: 216 KFRYRNRI----ITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              ++++     + N N +L      ++ + +DG+KTG T  +G   + ++ +    ++ 
Sbjct: 255 HLDFKDQGHTTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVNHAGARLIT 314

Query: 266 VVMG 269
           VVMG
Sbjct: 315 VVMG 318


>gi|326389891|ref|ZP_08211455.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325994159|gb|EGD52587.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 421

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 99/207 (47%), Gaps = 21/207 (10%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPAS TK++T  I  E     K +LN  +  S      + + ++L      T EQ + AL
Sbjct: 57  YPASTTKILTAIIAIE-----KGNLNDIVTASDNVTKIDGNSIFLSPGEQLTLEQLLYAL 111

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  SAND + A  E I GS + FA +M+ KAK+IG  ++ + N +GL D+N  +T  D A
Sbjct: 112 LLESANDAAIAIAEHIGGSIENFAKMMNEKAKEIGAYDSHFVNPNGLPDENHYSTPYDMA 171

Query: 196 ILGILLRKN-------------FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKT 242
           ++     +N              P   K+  +R     NR+I   +         DG+KT
Sbjct: 172 LIARYAMQNPEFRKIVTTIHYQIPPTNKFDKVRDLWLSNRLIKPSSF---HYEGADGVKT 228

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           GYT  +G  +V S       +++V+MG
Sbjct: 229 GYTVAAGQVLVASATRDGHRLISVIMG 255


>gi|38142333|dbj|BAD00969.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
          Length = 413

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 130/268 (48%), Gaps = 35/268 (13%)

Query: 33  KILFLSIIMISM--------ASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTK 82
           K +FL+++ IS+        A +     K++ I ++ N  ++  +++D  +P   AS+TK
Sbjct: 2   KKIFLTLLTISLLGGASTAVAQDFTIAAKHA-IAVEANTGKIL-YEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S    +       S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLRDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G + V +   K   ++ VV+
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVL 266


>gi|307266908|ref|ZP_07548427.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306918065|gb|EFN48320.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 421

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 99/207 (47%), Gaps = 21/207 (10%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPAS TK++T  I  E     K +LN  +  S      + + ++L      T EQ + AL
Sbjct: 57  YPASTTKILTAIIAIE-----KGNLNDIVTASDNVTKIDGNSIFLSPGEQLTLEQLLYAL 111

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  SAND + A  E I GS + FA +M+ KAK+IG  ++ + N +GL D+N  +T  D A
Sbjct: 112 LLESANDAAIAIAEHIGGSIENFAKMMNEKAKEIGAYDSHFVNPNGLPDENHYSTPYDMA 171

Query: 196 ILGILLRKN-------------FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKT 242
           ++     +N              P   K+  +R     NR+I   +         DG+KT
Sbjct: 172 LIARYAMQNPEFRKIVTTIHYQIPPTNKFDKVRDLWLSNRLIKPSSF---HYEGADGVKT 228

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           GYT  +G  +V S       +++V+MG
Sbjct: 229 GYTVAAGQVLVASATRDGHRLISVIMG 255


>gi|300119331|ref|ZP_07057009.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           SJ1]
 gi|298723286|gb|EFI64050.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           SJ1]
          Length = 338

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 122/229 (53%), Gaps = 17/229 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S+I+ID N  ++   K +E    + +L+K+MT YI+ E L    + L+  + +S     A
Sbjct: 37  SAILIDANSGEVVYKKNEETSIQSDTLSKLMTEYIVLEQLNKGNIQLDEVVQISNEVFRA 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             +P ++  K+KT  T    + AL+    N  + A  E I+G+E  F  LM+ KAK++ +
Sbjct: 97  ETSPIQVTSKDKT--TVRDLLHALLLTGNNRSTLALAEHIAGNEDNFTQLMNEKAKQLKL 154

Query: 172 -QNTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIIT 225
            Q + + NA+G++   +K   TTA +   L   L  +FP       +   +F +++  + 
Sbjct: 155 PQPSPFLNATGMNNGTNKLSTTTAIEVGKLATRLVTDFPDVLNVTKLTSYQFTFKDTKVF 214

Query: 226 NHNKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N NK+   LN   K+  +DG++T ++ NS ++ V++ +  D  +++V++
Sbjct: 215 NTNKMIYSLNKNIKLQGVDGLQTSFSTNSNYSFVSTAKRGDTRLISVIL 263


>gi|49477760|ref|YP_036665.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49329316|gb|AAT59962.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 338

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 122/229 (53%), Gaps = 17/229 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S+I+ID N  ++   K +E     A+L+K+MT YI+ E L    + L+  + +S     A
Sbjct: 37  SAILIDANSGEVVYKKNEETSIQSATLSKLMTEYIVLEQLDKGNIQLDEVVKISNEVFRA 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             +P ++  K+KT  T    + AL+    N  + A  E I+G+E  F  LM+ KAK++ +
Sbjct: 97  ETSPIQVTSKDKT--TVRDLLHALLLTGNNRSTLALAEHIAGNEDNFTQLMNEKAKQLKL 154

Query: 172 -QNTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIIT 225
            Q + + NA+G++   +K   TTA +   L   L  +FP       +   +F +++  + 
Sbjct: 155 SQPSPFLNATGMNNGTNKLSTTTAIEVGKLATRLVTDFPDVLNVTKLTSYQFTFKDTKVF 214

Query: 226 NHNKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N NK+   LN   K+  +DG++T ++ NS ++ V++ +  +  +++V++
Sbjct: 215 NTNKMIYSLNKNIKLQGVDGLQTSFSTNSNYSFVSTAKRGNTRLISVIL 263


>gi|294496884|ref|YP_003560584.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium QM B1551]
 gi|295702251|ref|YP_003595326.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium DSM 319]
 gi|294346821|gb|ADE67150.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium QM B1551]
 gi|294799910|gb|ADF36976.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium DSM 319]
          Length = 451

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 121/259 (46%), Gaps = 45/259 (17%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT---------GFKQDEPRYPA 78
           + LM  + F+S       ++  A PK   I ++ +   +          G   D     A
Sbjct: 15  VMLMASVFFVS-------TQASAAPKTDDIGVEADAAILVEASTGKVLYGKNTDALLGIA 67

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA--TQN--PSKLYLKEKTYFTTEQGILA 134
           S+TKMMT Y++ E ++ KKL  + ++PVSK AA  +Q+   S + L E   +T ++   A
Sbjct: 68  SMTKMMTEYLVLESIKDKKLSWDQRVPVSKYAAKISQDYGLSNVPLIENQKYTVKELYDA 127

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------------ 182
           +   SAN  + A  E +SGSE+ F  LM+  AK++ M  + + N++GL            
Sbjct: 128 MAIYSANGAAIALAEAVSGSEENFIKLMNETAKRLNMGESKFVNSTGLSNSLLKGMYPKG 187

Query: 183 ---HDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKM 234
               D+N + +AR  A L   L  ++P+  +         R+ +     + N NK+L   
Sbjct: 188 TKEEDEN-LLSARAVATLAYHLIHDYPESLEVAKTPSKMFRQGQQGETKMNNWNKMLPGF 246

Query: 235 ----HNIDGIKTGYTRNSG 249
                 +DG+KTG+T  +G
Sbjct: 247 SAAYSGVDGLKTGHTDFAG 265


>gi|268607994|ref|ZP_06141725.1| hypothetical protein RflaF_00660 [Ruminococcus flavefaciens FD-1]
          Length = 364

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 115/231 (49%), Gaps = 24/231 (10%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHL 100
           +  A E  A+   ++I+I+ ++N++  +  +  R YPASLTK+MTL +  E   ++ LH 
Sbjct: 96  VEFAKEFDAR---NAILINADQNEIIAYNGERYRMYPASLTKVMTLIVAVE--NAEDLH- 149

Query: 101 NTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           +T +   K       Q+ S+         + E  +  +I  S  D ++A  ++++GSEKK
Sbjct: 150 DTVLITDKMVTPYIEQDASRAGFLPGETPSVEALLYGMILNSGADAASAVAKYVAGSEKK 209

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI-----LGILLRKNFPQYYKYF 212
           F  LM+ KA+++G+  T + N  GLHD    +TA D A+     +G    K     Y+Y 
Sbjct: 210 FVELMNKKAEEMGLYATHFTNVVGLHDPQHYSTAEDMAMILKYAIGNKTCKKILSAYEY- 268

Query: 213 SIRKFRYRNRIITNHNKLLNKMHN--IDGI-----KTGYTRNSGFNIVTSL 256
              +       +T  + L  +M+   IDG+     KTG+T  +G N + S 
Sbjct: 269 KFPETEQNPEGLTFTSTLFTRMYGDEIDGVKILGGKTGFTDKAG-NCIESF 318


>gi|229103097|ref|ZP_04233784.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-28]
 gi|228680286|gb|EEL34476.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-28]
          Length = 453

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 138/283 (48%), Gaps = 36/283 (12%)

Query: 21  SIYIQRNIQLMGKI-LFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DE 73
            ++ +R I ++  I LF SI++ S  +     P       S+I+I+ N  ++   K  DE
Sbjct: 19  GMFCKRFIAIVTVITLFCSIVVTSGRASAETVPAIDVEAGSAILIEANSGKILYQKNADE 78

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTE 129
               AS+TKMM+ Y++ E +   KL  + ++ +S    K +  ++ S + L+    +T +
Sbjct: 79  SLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVK 138

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG-------- 181
           +   A+   SAN  + A  E I+G E  F  +M++K+K+ GM++  + NA+G        
Sbjct: 139 ELYEAMAIYSANGATIALVEEIAGKEVNFVKMMNDKSKEFGMKHYKFVNATGLTNQDLKG 198

Query: 182 -------LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----IITNHNK 229
                  L +KN++ +ARD AIL   L ++FP+      I K  ++        + N N 
Sbjct: 199 YHLEGTNLDEKNKM-SARDCAILAQRLIQDFPKILDTAKIPKKTFQKGGKYPIDMVNFNW 257

Query: 230 LLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +L  +      +DG+KTG T  +G     ++      +++VV+
Sbjct: 258 MLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVI 300


>gi|229119057|ref|ZP_04248397.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock1-3]
 gi|228664386|gb|EEL19887.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock1-3]
          Length = 453

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 146/303 (48%), Gaps = 38/303 (12%)

Query: 1   MLQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKI-LFLSIIMISMASELHAKPKY----- 54
           ML+++  S  KK         ++ +R I ++  + LF SI++ S  +     P       
Sbjct: 1   MLEERFLS--KKILEVTEVKGMFCKRFIAIVTVLALFCSIVVTSGRASAETVPAIDVEAG 58

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   K+  + ++ +S    K 
Sbjct: 59  SAILIEANSGKILYQKNADESLAIASMTKMMSEYLVHEAVAKGKIKWDQKVKISEYAHKI 118

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ 
Sbjct: 119 SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIAGKEVNFVKMMNDKSKEF 178

Query: 170 GMQNTIYKNASG---------------LHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           GM++  + N++G               L +KN++ +ARD AIL   L ++FPQ      I
Sbjct: 179 GMKDYKFVNSTGLTNQDLKGYHPEGTTLDEKNKM-SARDCAILAQRLIQDFPQILNTAKI 237

Query: 215 RKFRYRNR-----IITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            K  ++        + N N +L  +      +DG+KTG T  +G     ++      +++
Sbjct: 238 PKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLIS 297

Query: 266 VVM 268
           VV+
Sbjct: 298 VVI 300


>gi|77405145|ref|ZP_00782244.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
           agalactiae H36B]
 gi|77176288|gb|EAO79058.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
           agalactiae H36B]
          Length = 414

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 126/247 (51%), Gaps = 28/247 (11%)

Query: 29  QLMGKILFLSII--MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMT 85
           +++  IL LS I  M ++++E        ++ +D++  ++   K  ++P   ASLTK+MT
Sbjct: 6   KIITSILLLSCIFFMPTISAESFNASAKHALAVDLDSGKILYEKDANKPAAIASLTKIMT 65

Query: 86  LYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           +Y++++ + +  L  NT++ +     +     + S + L EK  +T +Q + A +  SAN
Sbjct: 66  VYMVYKEIDNGNLKWNTKVNIXDYPYQLTRESDASNVPL-EKRRYTVKQLVDAAMISSAN 124

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL---------------HDKN 186
             + A  E ISG+E KF   M+ + +K G+ ++   NASGL               +D+N
Sbjct: 125 SAAIALAEHISGTESKFVDKMTAQLEKWGIHDSHLVNASGLNNSMLGNHIYPKSSQNDEN 184

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKT 242
           ++ +ARD AI+   L   +P   K  S    ++   I+ ++N +L  M      I G+KT
Sbjct: 185 KM-SARDIAIVAYHLVNEYPSILKITSKSVAKFDKDIMHSYNYMLPDMPVFRPGITGLKT 243

Query: 243 GYTRNSG 249
           G T  +G
Sbjct: 244 GTTELAG 250


>gi|224498349|ref|ZP_03666698.1| hypothetical protein LmonF1_01100 [Listeria monocytogenes Finland
           1988]
          Length = 269

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 118/236 (50%), Gaps = 25/236 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+ V  V   +M   K  +   P ASLTK+MT +++ E + +KKL  + Q+ + +     
Sbjct: 33  SAAVFSVENGKMLYEKNADKVMPIASLTKLMTAFLVLEAVDNKKLSWDEQLDLVR---LD 89

Query: 114 NPSKLYL---KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           +PS + L    +K  ++      A++  SAND +   G+ + G+   F   M+N+AKK+G
Sbjct: 90  DPSAVSLYAITQKRTWSVRDLYSAMLVMSANDAAETLGDRLEGA--SFPQKMNNEAKKLG 147

Query: 171 MQN-TIYKNASGLHDKNQ--ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           + N T + +ASGL    +  ++T +D  +L   L     +  +  S      ++ IIT  
Sbjct: 148 LSNKTKFVSASGLDVDGEMAVSTTKDLFLLSSKLISTHSEVLETTS------KSSIITEE 201

Query: 228 -------NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
                  N L+  +  +DG+KTG+T  +G+  + +       ++++V+   T+++R
Sbjct: 202 GAKLESTNDLIGAIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDADTAEKR 257


>gi|196047683|ref|ZP_03114887.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           03BB108]
 gi|225862066|ref|YP_002747444.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           03BB102]
 gi|196021468|gb|EDX60171.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           03BB108]
 gi|225789232|gb|ACO29449.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           03BB102]
          Length = 439

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 137/287 (47%), Gaps = 38/287 (13%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ VS    K 
Sbjct: 43  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAYKI 102

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A+   SAN  + A  E I G E  F  LM+NK+K++
Sbjct: 103 SQDRSLSNVPLRNGESYTVKELYEAMAIYSANGATIALAEAIGGKEVDFVKLMNNKSKEL 162

Query: 170 GMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL               D+     ARD AIL   L ++FP+      I 
Sbjct: 163 GLKNYKFVNSTGLTNKDLKGQHPEGTNPDEENKMAARDVAILAQRLIQDFPKTLDTAKIS 222

Query: 216 KFRYR----NRI-ITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           K  +R    +RI + N N +L  +      +DG+KTG T  +G     ++       ++V
Sbjct: 223 KKTFREGTTDRIDMINWNWMLPGLSKAYDGVDGLKTGSTPEAGECFTGTIEKDGMRFISV 282

Query: 267 VMGMPTSQER--DQKAL--------ELITSFLEKKTLKHQQTHRKDN 303
           V+   +   R  + K L        E+   + +  ++K Q+T R +N
Sbjct: 283 VINTKSRDARFDETKKLYDYGFANFEMKQMYKKGSSVKGQETVRVEN 329


>gi|118475787|ref|YP_892938.1| D-alanyl-D-alanine carboxypeptidase A [Bacillus thuringiensis str.
           Al Hakam]
 gi|229182408|ref|ZP_04309661.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BGSC 6E1]
 gi|118415012|gb|ABK83431.1| D-Ala-D-Ala carboxypeptidase A, Serine peptidase, MEROPS family S11
           [Bacillus thuringiensis str. Al Hakam]
 gi|228601054|gb|EEK58621.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BGSC 6E1]
          Length = 444

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 137/287 (47%), Gaps = 38/287 (13%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ VS    K 
Sbjct: 48  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAYKI 107

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A+   SAN  + A  E I G E  F  LM+NK+K++
Sbjct: 108 SQDRSLSNVPLRNGESYTVKELYEAMAIYSANGATIALAEAIGGKEVDFVKLMNNKSKEL 167

Query: 170 GMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL               D+     ARD AIL   L ++FP+      I 
Sbjct: 168 GLKNYKFVNSTGLTNKDLKGQHPEGTNPDEENKMAARDVAILAQRLIQDFPKTLDTAKIS 227

Query: 216 KFRYR----NRI-ITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           K  +R    +RI + N N +L  +      +DG+KTG T  +G     ++       ++V
Sbjct: 228 KKTFREGTTDRIDMINWNWMLPGLSKAYDGVDGLKTGSTPEAGECFTGTIEKDGMRFISV 287

Query: 267 VMGMPTSQER--DQKAL--------ELITSFLEKKTLKHQQTHRKDN 303
           V+   +   R  + K L        E+   + +  ++K Q+T R +N
Sbjct: 288 VINTKSRDARFDETKKLYDYGFANFEMKQMYKKGSSVKGQETVRVEN 334


>gi|229089145|ref|ZP_04220429.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-42]
 gi|228694186|gb|EEL47865.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-42]
          Length = 444

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 137/287 (47%), Gaps = 38/287 (13%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ VS    K 
Sbjct: 48  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAYKI 107

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A+   SAN  + A  E I G E  F  LM+NK+K++
Sbjct: 108 SQDRSLSNVPLRNGESYTVKELYEAMAIYSANGATIALAEAIGGKEVDFVKLMNNKSKEL 167

Query: 170 GMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL               D+     ARD AIL   L ++FP+      I 
Sbjct: 168 GLKNYKFVNSTGLTNKDLKGRHPEGTNPDEENKMAARDVAILAQRLIQDFPKTLDTAKIS 227

Query: 216 KFRYR----NRI-ITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           K  +R    +RI + N N +L  +      +DG+KTG T  +G     ++       ++V
Sbjct: 228 KKTFREGTTDRIDMINWNWMLPGLSKAYDGVDGLKTGSTPEAGECFTGTIEKDGMRFISV 287

Query: 267 VMGMPTSQER--DQKAL--------ELITSFLEKKTLKHQQTHRKDN 303
           V+   +   R  + K L        E+   + +  ++K Q+T R +N
Sbjct: 288 VINTKSRDARFDETKKLYDYGFANFEMKQMYKKGSSVKGQETVRVEN 334


>gi|38142331|dbj|BAD00968.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
          Length = 413

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 130/268 (48%), Gaps = 35/268 (13%)

Query: 33  KILFLSIIMISM--------ASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTK 82
           K +FL+++ +S+        A +     K++ I ++ N  ++  +++D  +P   AS+TK
Sbjct: 2   KKIFLTLLTVSLLGGASTAVAQDFTIAAKHA-IAVEANTGKIL-YEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S    +       S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G + V +   K   ++ VV+
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVL 266


>gi|4240003|dbj|BAA74787.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens]
          Length = 183

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 96/182 (52%), Gaps = 11/182 (6%)

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           AA+   SK+  +     T  + +  L+ +S ND + A  E I GS + F+ILM++ A+ +
Sbjct: 1   AASIRGSKVGFRAGEKVTMRELLFGLMYKSGNDAAIAIAEHIGGSIENFSILMNDFARML 60

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-------KYFSIRKFRYRNR 222
           G++++ +++  GL  +   ++A D   L +L+ K   + +       K     K+ +  R
Sbjct: 61  GLKDSNFQSPHGLDSQMHFSSAYD---LAVLMSKAMEEPFFREISGTKEVGAEKYNF-TR 116

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
             +N NK+L ++ N +G KTGYT  +G  +V+S+ +    I+ VV+  PT  E  ++  E
Sbjct: 117 SYSNINKMLWRLPNANGGKTGYTGQAGKCLVSSVDHNGRNIIIVVLNCPTRWEATERVYE 176

Query: 283 LI 284
            +
Sbjct: 177 YV 178


>gi|225861235|ref|YP_002742744.1| penicillin-binding protein 3 [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298255726|ref|ZP_06979312.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298503122|ref|YP_003725062.1| serine family D-Ala-D-Ala carboxypeptidase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|38142303|dbj|BAD00954.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142335|dbj|BAD00970.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142337|dbj|BAD00971.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142341|dbj|BAD00973.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142353|dbj|BAD00979.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|225727841|gb|ACO23692.1| penicillin-binding protein 3 [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238717|gb|ADI69848.1| serine family D-Ala-D-Ala carboxypeptidase [Streptococcus
           pneumoniae TCH8431/19A]
          Length = 413

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 130/268 (48%), Gaps = 35/268 (13%)

Query: 33  KILFLSIIMISM--------ASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTK 82
           K +FL+++ +S+        A +     K++ I ++ N  ++  +++D  +P   AS+TK
Sbjct: 2   KKIFLTLLTVSLLGGASTAVAQDFTIAAKHA-IAVEANTGKIL-YEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S    +       S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G + V +   K   ++ VV+
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVL 266


>gi|315284191|ref|ZP_07872092.1| beta-lactamase [Listeria marthii FSL S4-120]
 gi|313612161|gb|EFR86402.1| beta-lactamase [Listeria marthii FSL S4-120]
          Length = 269

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 118/236 (50%), Gaps = 25/236 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+ V  V   +M   K  +   P ASLTK+MT +++ E + +KKL  + Q+ + +     
Sbjct: 33  SAAVFSVENGKMLYEKNADKVMPIASLTKLMTAFLVLEAVDNKKLSWDEQLDLVR---LD 89

Query: 114 NPSKLYL---KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           +PS + L    +K  ++      A++  SAND +   G+ + G+   F   M+N+AKK+G
Sbjct: 90  DPSAVSLYAITQKRTWSVRDLYSAMLVMSANDAAETLGDRLEGA--SFPQKMNNEAKKLG 147

Query: 171 MQN-TIYKNASGLHDKNQ--ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           + N T + +ASGL    +  ++T +D  +L   L     +  +  S      ++ IIT  
Sbjct: 148 LSNKTKFVSASGLDVDGEMAVSTTKDLFLLSSKLISTHSEVLETTS------KSSIITEE 201

Query: 228 -------NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
                  N L+  +  +DG+KTG+T  +G+  + +       ++++V+   T+++R
Sbjct: 202 GAKLESTNDLIGAIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDTDTAEKR 257


>gi|149002408|ref|ZP_01827342.1| penicillin-binding protein 3/D-alanyl-D-alanine carboxypeptidase
           [Streptococcus pneumoniae SP14-BS69]
 gi|237650527|ref|ZP_04524779.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae CCRI
           1974]
 gi|237822666|ref|ZP_04598511.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae CCRI
           1974M2]
 gi|147759345|gb|EDK66337.1| penicillin-binding protein 3/D-alanyl-D-alanine carboxypeptidase
           [Streptococcus pneumoniae SP14-BS69]
          Length = 413

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 130/268 (48%), Gaps = 35/268 (13%)

Query: 33  KILFLSIIMISM--------ASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTK 82
           K +FL+++ +S+        A +     K++ I ++ N  ++  +++D  +P   AS+TK
Sbjct: 2   KKIFLTLLTVSLLGGASTAVAQDFTIAAKHA-IAVEANTGKIL-YEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S    +       S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G + V +   K   ++ VV+
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVL 266


>gi|152974802|ref|YP_001374319.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023554|gb|ABS21324.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH
           391-98]
          Length = 423

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 111/207 (53%), Gaps = 21/207 (10%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ-- 130
           E  +PAS+TK++T  ++ E+ + ++     Q  +S+ A  Q  S   L+ +   T ++  
Sbjct: 65  EHAFPASMTKVLTAILLMEHTKPEE-----QFTLSQAALDQEKSNYQLEFQAGETVDRNT 119

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            ++ L+  SANDV+ A GE I GS + FA +M+ KAK++G  ++ +   +GLHD N  TT
Sbjct: 120 ALMILMVLSANDVAYAIGEHIGGSIENFAHMMNEKAKQLGATDSHFVTPNGLHDPNHYTT 179

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN--KLLNKMHNID-----GIKTG 243
           A D A++   ++K +P+  +  + +    R  + T+     + NK +  +     G KTG
Sbjct: 180 AYDMAMITRGVQK-YPEILQAMNTK----RTTVTTSRQTVSIFNKANYFENPYSIGGKTG 234

Query: 244 YTRNSGFNIVTSLRYKD-DPIVAVVMG 269
           +T N   N +  L  KD + I+ VVM 
Sbjct: 235 FT-NEARNTLVLLNEKDGNRIINVVMA 260


>gi|332073203|gb|EGI83682.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           GA17570]
          Length = 413

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 130/268 (48%), Gaps = 35/268 (13%)

Query: 33  KILFLSIIMISM--------ASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTK 82
           K +FL+++ +S+        A +     K++ I ++ N  ++  +++D  +P   AS+TK
Sbjct: 2   KKIFLTLLTVSLLGGASTAVAQDFTIAAKHA-IAVEANTGKIL-YEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S    +       S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G + V +   K   ++ VV+
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVL 266


>gi|229542251|ref|ZP_04431311.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           coagulans 36D1]
 gi|229326671|gb|EEN92346.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           coagulans 36D1]
          Length = 468

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 144/294 (48%), Gaps = 45/294 (15%)

Query: 16  TYPYGSIYIQRNIQLMGKILFLSIIMISMAS-------------ELHAKPKYSSIVIDVN 62
           TY  G + +++++Q M    FL++++ +                ++HAK   ++I++D +
Sbjct: 22  TYLDGGLKVKKSLQKMA-FAFLALLLTAGVVQQVPKTVHAQDQLDIHAK---AAIIVDAD 77

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SK 117
             Q+   K  ++    AS++KMMT Y++ + +  KK+  N ++ +S  A   +QN   S 
Sbjct: 78  NGQILYEKNANQALGIASMSKMMTEYLLLKAIHEKKVSWNQKVTISDYAYRISQNRALSN 137

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           + L++   +T ++   A+   SAN  + A  E + G+EK +  +M+ +AK  G+ +  + 
Sbjct: 138 VPLRKGEKYTVKELFQAMAIYSANGATIAIAETLGGTEKNYLNMMNKQAKAFGLTDYKFV 197

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI 223
           NA+GL++++               + +A+  A +   L  ++P+  +  S  K ++R   
Sbjct: 198 NATGLNNEDLQGMQPEGTGRTEENLVSAKSVAKIAYHLIHDYPEILQTTSTAKMKFRAGT 257

Query: 224 -----ITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                + N N +L  +      +DG+KTG T N+G+    + +     I+ VV+
Sbjct: 258 DDEIAMQNWNWMLPSLVYGRQGVDGLKTGNTDNAGYCFTGTAKQNGMRIITVVL 311


>gi|168490961|ref|ZP_02715104.1| penicillin-binding protein 3 [Streptococcus pneumoniae CDC0288-04]
 gi|221231651|ref|YP_002510803.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae ATCC
           700669]
 gi|225854380|ref|YP_002735892.1| penicillin-binding protein 3 [Streptococcus pneumoniae JJA]
 gi|38142283|dbj|BAD00944.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142293|dbj|BAD00949.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142313|dbj|BAD00959.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142321|dbj|BAD00963.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142323|dbj|BAD00964.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142343|dbj|BAD00974.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142355|dbj|BAD00980.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|66817132|gb|AAY56862.1| penicillin-binding protein 3 [Streptococcus pneumoniae ATCC 700669]
 gi|183574667|gb|EDT95195.1| penicillin-binding protein 3 [Streptococcus pneumoniae CDC0288-04]
 gi|220674111|emb|CAR68630.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
           pneumoniae ATCC 700669]
 gi|221327902|gb|ACM17687.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|221327910|gb|ACM17691.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|225723264|gb|ACO19117.1| penicillin-binding protein 3 [Streptococcus pneumoniae JJA]
          Length = 413

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 130/268 (48%), Gaps = 35/268 (13%)

Query: 33  KILFLSIIMISM--------ASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTK 82
           K +FL+++ +S+        A +     K++ I ++ N  ++  +++D  +P   AS+TK
Sbjct: 2   KKIFLTLLTVSLLGGASTAVAQDFTIAAKHA-IAVEANTGKIL-YEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S    +       S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G + V +   K   ++ VV+
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVL 266


>gi|15902820|ref|NP_358370.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae R6]
 gi|116516506|ref|YP_816254.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae D39]
 gi|1620468|emb|CAA67776.1| D,D-carboxypeptidase [Streptococcus pneumoniae]
 gi|15458372|gb|AAK99580.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae R6]
 gi|116077082|gb|ABJ54802.1| penicillin-binding protein 3/D-alanyl-D-alanine carboxypeptidase
           [Streptococcus pneumoniae D39]
          Length = 413

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 130/268 (48%), Gaps = 35/268 (13%)

Query: 33  KILFLSIIMISM--------ASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTK 82
           K +FL+++ +S+        A +     K++ I ++ N  ++  +++D  +P   AS+TK
Sbjct: 2   KKIFLTLLTVSLLGGVSTAVAQDFTIAAKHA-IAVEANTGKIL-YEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S    +       S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G + V +   K   ++ VV+
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVL 266


>gi|90961063|ref|YP_534979.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           salivarius UCC118]
 gi|90820257|gb|ABD98896.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           salivarius UCC118]
          Length = 418

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 119/255 (46%), Gaps = 28/255 (10%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI- 104
           +L AK   S+I ID    Q+   K D+  YP AS++K++T YI+ + +   ++   T++ 
Sbjct: 38  DLEAK---SAIAIDAKTGQIIYAKDDKQTYPVASMSKLLTAYILLQAIHKGEVTWETKVT 94

Query: 105 PVSKTAATQNPSKLY---LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
           P +      N ++L    L+E   +T  Q   A++  SAN  +   G  ISG++ KF   
Sbjct: 95  PTATEVDISNNTELTNVPLQEGHSYTIRQLYQAMLVGSANAATMLIGNAISGTQTKFIDK 154

Query: 162 MSNKAKKIGMQNTIYKNASGL------------HDKNQIT--TARDQAILGILLRKNFPQ 207
           M   AK +G+ +    +A+GL             D+N     + RD AI+   L K +P+
Sbjct: 155 MRETAKSLGITDAKIYSANGLTAKYLGDEIYPNTDENAENEFSVRDMAIISQKLIKEYPE 214

Query: 208 YYKYFSIRKFRYRNR----IITNHNKLLNKMHN--IDGIKTGYTRNSGFNIVTSLRYKDD 261
             +   + K  + +      + N N+LL    N  IDG+KTG +  +G+   ++      
Sbjct: 215 ILETTKLTKIDFNDNGEITTVNNTNELLQDDSNLEIDGLKTGTSDAAGYCFASTTNKDGH 274

Query: 262 PIVAVVMGMPTSQER 276
            I+ V+ G   +  R
Sbjct: 275 RIITVIAGAKDNDAR 289


>gi|254827380|ref|ZP_05232067.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258599758|gb|EEW13083.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
          Length = 272

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 110/206 (53%), Gaps = 12/206 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL---KEKTYFTTEQGILA 134
           ASLTK+MT +++ E + + +L  + ++ + +     +PS + L    +K  ++      A
Sbjct: 57  ASLTKLMTAFLVLEAVDNNELSWDEKLNLVR---LDDPSAVSLYAITQKRTWSVRDLYSA 113

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGL--HDKNQITTA 191
           ++T SAND +   G+ + G++  F   M+N+AKK+GM + T + +ASGL    K+ ++T 
Sbjct: 114 MLTMSANDAAETLGDRLDGAD--FPKEMNNQAKKLGMSSKTTFVSASGLDVDGKSAVSTT 171

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           +D  +L   L    P+  +  S       +   + + N LL  +  +DG+KTG+T  +G+
Sbjct: 172 KDLFLLSSKLISTHPEVLETTSKPTVTTDKGAKLESTNDLLGSIQGLDGLKTGFTDEAGY 231

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQER 276
             + +       ++++V+   T+++R
Sbjct: 232 CFIGTAERGGKRVISIVLDAGTAEKR 257


>gi|294793071|ref|ZP_06758217.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella sp. 6_1_27]
 gi|294456016|gb|EFG24380.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella sp. 6_1_27]
          Length = 300

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 19/223 (8%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           ++ID +  ++   K  D+  +PAS TKM+TL    E    K   L+    +S  A +   
Sbjct: 63  VLIDADTKEILFAKNPDKWMHPASTTKMVTLLTALEL---KGTQLDELATISSYATSMEE 119

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S L ++     T E  +  ++  S ND +    E +SGS  KFA  M+  A K G +N++
Sbjct: 120 SNLGVRVGDQITLEGVLEGMMVASGNDAAIVVAENVSGSVDKFAKDMTRIAAKAGAKNSV 179

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR------KFRYRNR----IIT 225
           + N  GL  K   +TARD A++       +   Y+ F  +      K  Y+NR    I T
Sbjct: 180 FLNPHGLTQKGHHSTARDLAMIAA-----YGMKYQMFRDKVANDYYKVPYQNRAPETIRT 234

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            ++ + NK    +G+KTG+T  +G  ++ S   K   ++ V++
Sbjct: 235 TNHFIRNKYPGANGLKTGFTNAAGECLIASATRKGHTMIVVML 277


>gi|282849251|ref|ZP_06258636.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella parvula ATCC
           17745]
 gi|282580955|gb|EFB86353.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella parvula ATCC
           17745]
          Length = 285

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 19/223 (8%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           ++ID +  ++   K  D+  +PAS TKM+TL    E    K   L+    +S  A +   
Sbjct: 48  VLIDADTKEILFAKNPDKWMHPASTTKMVTLLTALEL---KGTQLDELATISSYATSMEE 104

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S L ++     T E  +  ++  S ND +    E +SGS  KFA  M+  A K G +N++
Sbjct: 105 SNLGVRVGDQITLEGVLEGMMVASGNDAAVVVAENVSGSVDKFAKDMTRIAAKAGAKNSV 164

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR------KFRYRNR----IIT 225
           + N  GL  K   +TARD A++       +   Y+ F  +      K  Y+NR    I T
Sbjct: 165 FLNPHGLTQKGHHSTARDLAMIAA-----YGMKYQMFRDKVANDYYKVPYQNRAPETIRT 219

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            ++ + NK    +G+KTG+T  +G  ++ S   K   ++ V++
Sbjct: 220 TNHFIRNKYPGANGLKTGFTNAAGECLIASATRKGHTMIVVML 262


>gi|225856538|ref|YP_002738049.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           P1031]
 gi|38142339|dbj|BAD00972.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|225726015|gb|ACO21867.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           P1031]
          Length = 413

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 130/268 (48%), Gaps = 35/268 (13%)

Query: 33  KILFLSIIMISM--------ASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTK 82
           K +FL+++ +S+        A +     K++ I ++ N  ++  +++D  +P   AS+TK
Sbjct: 2   KKIFLTLLTVSLLGGVSTAVAQDFTIAAKHA-IAVEANTGKIL-YEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S    +       S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G + V +   K   ++ VV+
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVL 266


>gi|38142281|dbj|BAD00943.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142299|dbj|BAD00952.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142351|dbj|BAD00978.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
          Length = 413

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 130/268 (48%), Gaps = 35/268 (13%)

Query: 33  KILFLSIIMISM--------ASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTK 82
           K +FL+++ +S+        A +     K++ I ++ N  ++  +++D  +P   AS+TK
Sbjct: 2   KKIFLTLLTVSLLGCASTAVAQDFTIAAKHA-IAVEANTGKIL-YEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S    +       S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G + V +   K   ++ VV+
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVL 266


>gi|168484754|ref|ZP_02709699.1| penicillin-binding protein 3 [Streptococcus pneumoniae CDC1873-00]
 gi|172042076|gb|EDT50122.1| penicillin-binding protein 3 [Streptococcus pneumoniae CDC1873-00]
          Length = 413

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 130/268 (48%), Gaps = 35/268 (13%)

Query: 33  KILFLSIIMISM--------ASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTK 82
           K +FL+++ +S+        A +     K++ I ++ N  ++  +++D  +P   AS+TK
Sbjct: 2   KKIFLTLLTVSLLGGASTAVAQDFTIAAKHA-IAVEANTGKIL-YEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S    +       S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G + V +   K   ++ VV+
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVL 266


>gi|38142291|dbj|BAD00948.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142297|dbj|BAD00951.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|301799864|emb|CBW32439.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
           pneumoniae OXC141]
          Length = 413

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 130/268 (48%), Gaps = 35/268 (13%)

Query: 33  KILFLSIIMISM--------ASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTK 82
           K +FL+++ +S+        A +     K++ I ++ N  ++  +++D  +P   AS+TK
Sbjct: 2   KKIFLTLLTVSLLGGASTAVAQDFTIAAKHA-IAVEANTGKIL-YEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S    +       S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G + V +   K   ++ VV+
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVL 266


>gi|15900755|ref|NP_345359.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           TIGR4]
 gi|148993686|ref|ZP_01823133.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP9-BS68]
 gi|149026353|ref|ZP_01836508.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP23-BS72]
 gi|168485819|ref|ZP_02710327.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           CDC1087-00]
 gi|168490307|ref|ZP_02714506.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP195]
 gi|168493026|ref|ZP_02717169.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           CDC3059-06]
 gi|182683787|ref|YP_001835534.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           CGSP14]
 gi|303255291|ref|ZP_07341362.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           BS455]
 gi|303260392|ref|ZP_07346361.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP-BS293]
 gi|303262749|ref|ZP_07348687.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265038|ref|ZP_07350952.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           BS397]
 gi|303267132|ref|ZP_07353001.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           BS457]
 gi|303269372|ref|ZP_07355143.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           BS458]
 gi|307127577|ref|YP_003879608.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           670-6B]
 gi|14972344|gb|AAK74999.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           TIGR4]
 gi|38142277|dbj|BAD00941.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142279|dbj|BAD00942.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142287|dbj|BAD00946.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142305|dbj|BAD00955.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142307|dbj|BAD00956.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142309|dbj|BAD00957.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142325|dbj|BAD00965.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142329|dbj|BAD00967.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142347|dbj|BAD00976.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142349|dbj|BAD00977.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|55167245|dbj|BAD67449.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|66817134|gb|AAY56863.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|66817138|gb|AAY56865.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|147927766|gb|EDK78789.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP9-BS68]
 gi|147929315|gb|EDK80314.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP23-BS72]
 gi|182629121|gb|ACB90069.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           CGSP14]
 gi|183570937|gb|EDT91465.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           CDC1087-00]
 gi|183571353|gb|EDT91881.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP195]
 gi|183577020|gb|EDT97548.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           CDC3059-06]
 gi|221327900|gb|ACM17686.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|221327904|gb|ACM17688.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|221327908|gb|ACM17690.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|221327914|gb|ACM17693.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|221327916|gb|ACM17694.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|221327922|gb|ACM17697.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|221327924|gb|ACM17698.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|301801696|emb|CBW34402.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
           pneumoniae INV200]
 gi|302597760|gb|EFL64835.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           BS455]
 gi|302636071|gb|EFL66568.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638427|gb|EFL68893.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP-BS293]
 gi|302641090|gb|EFL71466.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           BS458]
 gi|302643340|gb|EFL73618.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           BS457]
 gi|302645398|gb|EFL75631.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           BS397]
 gi|306484639|gb|ADM91508.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           670-6B]
 gi|332077286|gb|EGI87748.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           GA17545]
 gi|332204028|gb|EGJ18095.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           GA47368]
          Length = 413

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 130/268 (48%), Gaps = 35/268 (13%)

Query: 33  KILFLSIIMISM--------ASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTK 82
           K +FL+++ +S+        A +     K++ I ++ N  ++  +++D  +P   AS+TK
Sbjct: 2   KKIFLTLLTVSLLGGASTAVAQDFTIAAKHA-IAVEANTGKIL-YEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S    +       S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G + V +   K   ++ VV+
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVL 266


>gi|255026482|ref|ZP_05298468.1| hypothetical protein LmonocytFSL_09353 [Listeria monocytogenes FSL
           J2-003]
          Length = 272

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 110/206 (53%), Gaps = 12/206 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL---KEKTYFTTEQGILA 134
           ASLTK+MT +++ E + + +L  + ++ + +     +PS + L    +K  ++      A
Sbjct: 57  ASLTKLMTAFLVLEAVDNNELSWDEKLNLVR---LDDPSAVSLYAITQKRTWSVRDLYSA 113

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGL--HDKNQITTA 191
           ++T SAND +   G+ + G++  F   M+N+AKK+GM + T + +ASGL    K+ ++T 
Sbjct: 114 MLTMSANDAAETLGDRLDGAD--FPKEMNNQAKKLGMSSKTTFVSASGLDVDGKSAVSTT 171

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           +D  +L   L    P+  +  S       +   + + N LL  +  +DG+KTG+T  +G+
Sbjct: 172 KDLFLLSSKLISTHPEVLETTSKPTVTTDKGAKLESTNDLLGSIQGLDGLKTGFTDEAGY 231

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQER 276
             + +       ++++V+   T+++R
Sbjct: 232 CFIGTAERGGKRVISIVLDAGTAEKR 257


>gi|225573149|ref|ZP_03781904.1| hypothetical protein RUMHYD_01340 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039504|gb|EEG49750.1| hypothetical protein RUMHYD_01340 [Blautia hydrogenotrophica DSM
           10507]
          Length = 412

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 121/266 (45%), Gaps = 28/266 (10%)

Query: 28  IQLMGKILFLSIIM-ISMASELHAKPKYS---------SIVIDVNKNQMTGFKQ-DEPRY 76
           + LMG+ +F  +   +S   E+    + S          +V+DV    +   K  +E  Y
Sbjct: 16  VSLMGQTVFAQVEEPVSTKGEMDEPAENSQRVKVSSECGLVMDVGTQTVLYEKNGEELHY 75

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT-AATQNPSKLYLKEKTYFTTEQGILAL 135
           PAS+TK++T  ++ E  +  +  + +   V +  + + N       +K   T E  + A+
Sbjct: 76  PASITKLLTALVVMERCELDETVIFSHDAVYEVESGSGNNQGFEAGDK--LTVEDCLYAM 133

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I  S+N  + A  E  SGS + F   M+ KA+++G +N+ ++N SGL+D+ Q TTA D  
Sbjct: 134 ILESSNPAANALAEHTSGSLEAFVNEMNQKAEELGCENSNFENPSGLNDEAQKTTAYDMG 193

Query: 196 ILGILLRKN-------------FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKT 242
           ++   + KN              P              +R++    +  ++   + G KT
Sbjct: 194 LISSEVFKNDTLKEICSAETYQLPPTLNQTEGYLLHMEHRLVNGEEQKDDRWDLVAG-KT 252

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVM 268
           GYT  +G  +VT     D  +V+VVM
Sbjct: 253 GYTTMAGNTLVTYAEEDDKQLVSVVM 278


>gi|302535014|ref|ZP_07287356.1| predicted protein [Streptomyces sp. C]
 gi|302443909|gb|EFL15725.1| predicted protein [Streptomyces sp. C]
          Length = 879

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 94/185 (50%), Gaps = 12/185 (6%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG------ 131
           AS+TK MT YII      KK      I V KTA T+        E T  T ++G      
Sbjct: 568 ASVTKSMTAYIIMRDHPFKKGEKGAMIDVDKTAETEGQKDKSDNESTLNTVKEGEKISEY 627

Query: 132 --ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
             I AL+  SAN+++     + SGS++ F   M++ AK++GM NT Y + SGL D   ++
Sbjct: 628 DAIAALMIPSANNIARLLARWDSGSQEAFVKKMNDTAKELGMTNTTYTDPSGL-DATTVS 686

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNS 248
           TA DQ  LG+ + +  P       +  +  +  ++  N N+L+    ++ GIKTG T  +
Sbjct: 687 TAEDQVKLGLKIVE-IPALVDITRMPAWTDQTGKVWQNWNRLVPFNDSL-GIKTGTTTKA 744

Query: 249 GFNIV 253
           G N++
Sbjct: 745 GGNLL 749


>gi|148379380|ref|YP_001253921.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A str. ATCC 3502]
 gi|153934047|ref|YP_001383756.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936557|ref|YP_001387306.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A str. Hall]
 gi|148288864|emb|CAL82948.1| putative D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum
           A str. ATCC 3502]
 gi|152930091|gb|ABS35591.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932471|gb|ABS37970.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A str. Hall]
          Length = 424

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 109/228 (47%), Gaps = 22/228 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++ IDV   ++   K  + R YPAS TK +T  ++ E         N  IP + TA +Q
Sbjct: 39  TAMTIDVETGEIIYAKNIDKRMYPASTTKYLTALLLAENKGK-----NDNIPYTATAKSQ 93

Query: 114 -------NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
                  N   + + E      E  +  L+  S NDV+   G+ ++G+ K F  +MS K 
Sbjct: 94  PQYSLNINLHPINIGET--IKAENVMDGLLLFSGNDVAYMIGDALAGNNKNFENMMSKKI 151

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRN 221
           +++ ++NT +   +GLH+ N  TTA D +++     KN P  Y     K  SI   +   
Sbjct: 152 QELNLKNTHFVTPNGLHNPNHYTTAYDLSVISRAALKN-PWVYQSSNKKESSIVTSKGTK 210

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
             I N NKLL K   + G KTGYT  +G  +VT        I+ VVMG
Sbjct: 211 MAIENSNKLLGKDGCVAG-KTGYTDAAGRCLVTLFNRDGRKILGVVMG 257


>gi|38142295|dbj|BAD00950.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
          Length = 413

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 130/268 (48%), Gaps = 35/268 (13%)

Query: 33  KILFLSIIMISM--------ASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTK 82
           K +FL+++ +S+        A +     K++ I ++ N  ++  +++D  +P   AS+TK
Sbjct: 2   KKIFLTLLTVSLLGGASTAVAQDFTIAAKHA-IAVEANTGKIL-YEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S    +       S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G + V +   K   ++ VV+
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVL 266


>gi|295693488|ref|YP_003602098.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus ST1]
 gi|295031594|emb|CBL51073.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus ST1]
          Length = 433

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 120/252 (47%), Gaps = 32/252 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKT 109
           S+I ID +  Q+   K      P AS+TK++T+Y+  + +++ KL  + ++    P+ K 
Sbjct: 51  SAIAIDSDSGQILYAKNAAQTLPIASMTKLVTVYLTLQAIKNHKLSWDQKVKPTAPIVKV 110

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A     S + LK    +T  Q   A +  SAN  +   G+ I+GS+K F   M ++ KK 
Sbjct: 111 ANNAEYSNVPLKLGHSYTIRQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRDQVKKW 170

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++     A GL + N                 +A+D AI+G  L   FP+  +   + 
Sbjct: 171 GIEDAKIYTACGLPNGNLGKDAYPGVNKNAENTMSAKDMAIVGQKLISAFPEVLETTRLA 230

Query: 216 KFRYRNRI----ITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              +++      + N N +L      ++ + +DG+KTG T  +G   + ++++    ++ 
Sbjct: 231 HLNFKDAGHVTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVQHNGARLLT 290

Query: 266 VVMGMPTSQERD 277
           VVMG   ++ RD
Sbjct: 291 VVMG---ARHRD 299


>gi|148997049|ref|ZP_01824703.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP11-BS70]
 gi|168575530|ref|ZP_02721466.1| penicillin-binding protein 3 [Streptococcus pneumoniae MLV-016]
 gi|169833078|ref|YP_001694325.1| penicillin-binding protein 3 [Streptococcus pneumoniae
           Hungary19A-6]
 gi|307067470|ref|YP_003876436.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           AP200]
 gi|38142285|dbj|BAD00945.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142289|dbj|BAD00947.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142315|dbj|BAD00960.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142317|dbj|BAD00961.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|66817136|gb|AAY56864.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|147756749|gb|EDK63789.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP11-BS70]
 gi|168995580|gb|ACA36192.1| penicillin-binding protein 3 [Streptococcus pneumoniae
           Hungary19A-6]
 gi|183578404|gb|EDT98932.1| penicillin-binding protein 3 [Streptococcus pneumoniae MLV-016]
 gi|221327906|gb|ACM17689.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|221327912|gb|ACM17692.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|221327918|gb|ACM17695.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|221327920|gb|ACM17696.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|306409007|gb|ADM84434.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           AP200]
 gi|327390225|gb|EGE88568.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           GA04375]
          Length = 413

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 130/268 (48%), Gaps = 35/268 (13%)

Query: 33  KILFLSIIMISM--------ASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTK 82
           K +FL+++ +S+        A +     K++ I ++ N  ++  +++D  +P   AS+TK
Sbjct: 2   KKIFLTLLTVSLLGGASTAVAQDFTIAAKHA-IAVEANTGKIL-YEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S    +       S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G + V +   K   ++ VV+
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVL 266


>gi|38142301|dbj|BAD00953.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142327|dbj|BAD00966.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
          Length = 413

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 130/268 (48%), Gaps = 35/268 (13%)

Query: 33  KILFLSIIMISM--------ASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTK 82
           K +FL+++ +S+        A +     K++ I ++ N  ++  +++D  +P   AS+TK
Sbjct: 2   KKIFLTLLTVSLLGGASTAVAQDFTIAAKHA-IAVETNTGKIL-YEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S    +       S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G + V +   K   ++ VV+
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVL 266


>gi|225552024|ref|ZP_03772964.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia sp. SV1]
 gi|225371022|gb|EEH00452.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia sp. SV1]
          Length = 405

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 107/216 (49%), Gaps = 27/216 (12%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGI 132
           PASLTK++T+Y      + + + L + +P+S +A    A  N S ++L++      E+ +
Sbjct: 65  PASLTKIVTIYTALIEAEKRNIKLKSIVPISDSASYYNAPPNSSLMFLEKGQIVNFEEIL 124

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             L   S ND S A  EF+ G+   F  LM+     +G+ N  +   SG   +N+I TA 
Sbjct: 125 KGLSVSSGNDSSIAIAEFVVGNLNSFVNLMNINVLNLGLFNMHFVEPSGYSSENKI-TAL 183

Query: 193 DQAILGILLRKNFPQYYKYF----SIRKFRY---RNRIITNHNKLLN-KMHNI------- 237
           D A       K++ + +K+     S++ F Y   +N      +K LN K  N        
Sbjct: 184 DMA----FFVKSYIEKFKFMLNIHSLKYFIYPKSKNLGTALSSKFLNLKQRNANLLIYDY 239

Query: 238 ---DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
              DGIKTGY + SG N+V + +  +  ++AVV+G+
Sbjct: 240 PYSDGIKTGYIKESGLNLVATAKKGERRLIAVVLGV 275


>gi|309800179|ref|ZP_07694364.1| penicillin-binding protein 3 [Streptococcus infantis SK1302]
 gi|308116187|gb|EFO53678.1| penicillin-binding protein 3 [Streptococcus infantis SK1302]
          Length = 397

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 119/242 (49%), Gaps = 36/242 (14%)

Query: 56  SIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----- 108
           +I ++ N  ++  +++D  +P   AS++K++T+Y+++E L+  K+ L+T + +S      
Sbjct: 32  AIAVEANSGKIL-YEKDATQPVEIASISKLLTVYLVYEALEQGKISLSTPVEISDYPYQL 90

Query: 109 ---TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
              +AA+  P      E   +T E+ + A +  SAN  + A  E I+GSEK F  +M  K
Sbjct: 91  TTNSAASNVP-----MEARNYTVEELLEATLVSSANSAAIALAEKIAGSEKDFVDMMKAK 145

Query: 166 AKKIGMQNTIYKNASGLH---------------DKNQITTARDQAILGILLRKNFPQYYK 210
            ++ G+Q+    N +GL+               D+N++ +A D A++   L   +PQ  +
Sbjct: 146 LQEWGIQDATLVNTTGLNNETLGTNIYPGSKKDDENKL-SAYDVAVVARNLILKYPQVLE 204

Query: 211 YFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
                   +    I + N +L  M      +DG+KTG T  +G + V +   K   I+ V
Sbjct: 205 ITKKPSSTFAGMTIHSTNYMLEGMPAYRGGVDGLKTGTTDKAGASFVGTTVEKGMRIITV 264

Query: 267 VM 268
           V+
Sbjct: 265 VL 266


>gi|317496761|ref|ZP_07955091.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895773|gb|EFV17925.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 383

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 144/305 (47%), Gaps = 30/305 (9%)

Query: 35  LFLSIIMISM------ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMT-L 86
           +FL +I+ S+      A E++   K +++++D    ++   K  + + P AS TK++T L
Sbjct: 7   VFLYVIICSIQIYAVSAEEINLNAK-AAVIMDAESGKILYEKSKDQKMPNASTTKILTCL 65

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           YI+      K   L+    VSK AA Q   +L ++E   +  +  +  L+  S ND +  
Sbjct: 66  YIL------KHCDLDQMAEVSKNAAMQPKVRLGVREGEKYKVKDLLYGLMLESYNDCAVV 119

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DK--NQITTARDQAILGILLR 202
             E   GS +KF   M+  A+ +G  NT +   +GL   DK     TTA+D A +     
Sbjct: 120 LAEHAEGSVEKFEKRMNQMAENLGTLNTHFVTPNGLDGIDKKGRHETTAQDLAKIMARCI 179

Query: 203 KN-----FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
           KN       Q  +Y      R R  I  NHN LL+ M  +   KTGYT  +G+  V +++
Sbjct: 180 KNQQFLEITQTKQYTFTDGSRKRRFICNNHNALLSSMQGVISGKTGYTSKAGYCYVGAVK 239

Query: 258 YKDDPIVAVVM--GMP---TSQERD-QKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
            K+  +   V+  G P   T + +D +K ++  T   E++ +    +  K+      LK+
Sbjct: 240 QKNMTMTFSVLASGWPPHKTYKWKDVRKLVQYATDHYERREIIADTSKIKEISIKNGLKE 299

Query: 312 SLMIK 316
            +++K
Sbjct: 300 KVLLK 304


>gi|291542266|emb|CBL15376.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus bromii L2-63]
          Length = 374

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 96/203 (47%), Gaps = 11/203 (5%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   PAS TK+MT  I  E   S     N+++   +    +  S +YLK          
Sbjct: 52  DERMKPASTTKIMTSLITLEEAAS----CNSEVTFKQEMVAEG-SSMYLKVGEKVRLSDL 106

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
              ++  S ND + A    ISGS +KF+  M+ KAK+IGM NT +   SGL D N  ++A
Sbjct: 107 ASGMMMASGNDAANAAAYTISGSSEKFSQRMNEKAKQIGMTNTNFVTPSGLDDDNHYSSA 166

Query: 192 RDQAILG--ILLRKNFPQYYKYFSIR----KFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
           +D A+L    L   +F       S+     + + +     NHN+LL+      G KTGYT
Sbjct: 167 KDMALLMSYALENDDFANLTAKKSVTVEFLEPKTKKTAYANHNRLLSLYPYCTGGKTGYT 226

Query: 246 RNSGFNIVTSLRYKDDPIVAVVM 268
             +G  +V+S +     +V V +
Sbjct: 227 TVAGRCLVSSAKKDGVTLVCVTL 249


>gi|281492939|ref|YP_003354919.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactococcus lactis
           subsp. lactis KF147]
 gi|281376591|gb|ADA66077.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactococcus lactis
           subsp. lactis KF147]
          Length = 435

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 105/223 (47%), Gaps = 38/223 (17%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGIL 133
           AS+TK++T Y++++ +   KL  NT++P+S  A       N S + L +   +T +  + 
Sbjct: 65  ASITKLLTAYLVYKNVAENKLTWNTKVPISDYAYELTQNSNASNIPLAQNGQYTVKDLLN 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN------- 186
           AL+  SAN  + A  E I+GSE KF  +M+ + K  G+ ++   NASGL + +       
Sbjct: 125 ALLLPSANSAAVALAEKIAGSEPKFVDMMTKQMKDWGITDSHLVNASGLPNDDLNGHIYP 184

Query: 187 -------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----IITNHNKLLNKM 234
                   I +A+  A L   L ++FP+  +     +  +         +TN N++L+  
Sbjct: 185 GSGASATNIMSAKAVATLSYHLIQDFPEILQITKKTEIPFDTGNEAKMTLTNTNQMLSGF 244

Query: 235 H----NIDGIKT-----------GYTRNSGFNIVTSLRYKDDP 262
                 +DG+KT           G T  +GF I+T +    DP
Sbjct: 245 STSRTGVDGLKTGSTSFQIDCFAGTTNQNGFRIITVVLEATDP 287


>gi|288554616|ref|YP_003426551.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudofirmus
           OF4]
 gi|288545776|gb|ADC49659.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudofirmus
           OF4]
          Length = 444

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 118/232 (50%), Gaps = 34/232 (14%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS---KTAATQNP-SKLYLKEKTYFTTEQGIL 133
           AS+TKMM+ Y+I E +   ++  + Q+P+S   +T + Q   S + L++   +T      
Sbjct: 63  ASMTKMMSEYLILEAISEGRISWDQQVPISDWVRTLSLQTALSNVPLRQDETYTVRDLYE 122

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN------- 186
           ++   SAN  + A  E ISGSE +F  LM+ K +++G+++  + N+SGL++++       
Sbjct: 123 SVAIYSANASTIALAELISGSETQFVQLMNEKGEELGLEDFNFVNSSGLNNRDLQGNHPE 182

Query: 187 -------QITTARDQAILGILLRKNFPQYYKYFSI--RKFRYR-NRII--TNHNKLLNKM 234
                     +AR  A L   L +++P+  +  SI  + F+     +I   N N +L  +
Sbjct: 183 GTGAEAENEMSARATAKLAYALLRDYPEVLETASIPMKDFQAGPGEVIPMENWNWMLPTI 242

Query: 235 ------HNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQK 279
                   IDG+KTG+T  +G N  T    +D   +++VVM    ++ RD +
Sbjct: 243 RPQHDYEGIDGLKTGFTSAAG-NTFTGTAERDGMRLISVVM---RTESRDAR 290


>gi|228990579|ref|ZP_04150544.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
           12442]
 gi|228769105|gb|EEM17703.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
           12442]
          Length = 373

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 126/250 (50%), Gaps = 13/250 (5%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEY 92
           I+  S+I I   ++++    +++I+++ +  + + G  + E +  AS+TK+MT  +  E 
Sbjct: 12  IMCASVIPIHTYAQMNDVSAHNAILMEEHSGRVLYGKLEHESQKIASITKIMTALLAAES 71

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
            + K++     +P+S  A     S +YL+       E  +  L+ RS ND + A  E + 
Sbjct: 72  GKMKEV-----VPISDKAVRVEGSAIYLQPGKKVPLEDLVYGLMLRSGNDAAQAIAENVG 126

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRKNFPQYYKY 211
           GS + F  LM+ KAK+IGM++T + N  GL  D    ++A D A+L      N   + K 
Sbjct: 127 GSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGTHYSSAYDMALLTRYAMGN-ETFRKI 185

Query: 212 FSIRKFRYR--NRIITNHNKLLNKMHNI-DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           F  + ++ +  +    N +KL+   +    G KTG+T+ +G  +VT+     D +  +V+
Sbjct: 186 FGTKTYQSKMWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA--SKDGLDLIVV 243

Query: 269 GMPTSQERDQ 278
            +  S + D 
Sbjct: 244 TLNASNDWDD 253


>gi|194396776|ref|YP_002037508.1| penicillin-binding protein 3, D-alanyl-D-alanine carboxypeptidase
           [Streptococcus pneumoniae G54]
 gi|194356443|gb|ACF54891.1| penicillin-binding protein 3, D-alanyl-D-alanine carboxypeptidase
           [Streptococcus pneumoniae G54]
          Length = 413

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 130/268 (48%), Gaps = 35/268 (13%)

Query: 33  KILFLSIIMISM--------ASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTK 82
           K +FL+++ +S+        A +     K++ I ++ N  ++  +++D  +P   AS+TK
Sbjct: 2   KKIFLTLLTVSLLGGASTAVAQDFTIAAKHA-IAVEANTGKIL-YEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S    +       S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFARMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G + V +   K   ++ VV+
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVL 266


>gi|317470930|ref|ZP_07930309.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
 gi|316901581|gb|EFV23516.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
          Length = 374

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 104/214 (48%), Gaps = 25/214 (11%)

Query: 72  DEPRYPASLTKMMTLYIIFE-------YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKT 124
           D+  YPAS+TK++T  +  E        ++  +  +N+  P S     +   ++ L +  
Sbjct: 67  DKKSYPASITKILTTLVAIENNDDLYSTVKFSRHAVNSIEPGSTHIGIKAGEEIPLMDVL 126

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
           Y         ++  SAN+      E  SGS +KFA LM+ KAK+IG + + + N +GLH+
Sbjct: 127 Y--------GIMLESANEACNGVAEHTSGSIEKFADLMNKKAKEIGCKGSHFMNPNGLHN 178

Query: 185 KNQITTARDQAIL------GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM---- 234
                TARD A++        + RK     + + S      + R + NH+K++ +     
Sbjct: 179 DKHYVTARDMALITKAALQNPMFRKIACSSHYFMSGTNKEKKGRELWNHHKMVKQTMFLY 238

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             ++G KTGYT  +G  +VT  +  +  +++V++
Sbjct: 239 KGVEGGKTGYTTRAGGTLVTFAKRGETELISVIL 272


>gi|293379842|ref|ZP_06625964.1| beta-lactamase [Lactobacillus crispatus 214-1]
 gi|290923614|gb|EFE00495.1| beta-lactamase [Lactobacillus crispatus 214-1]
          Length = 433

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 119/252 (47%), Gaps = 32/252 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKT 109
           S+I ID +  Q+   K      P AS+TK++T+Y+  + +++ KL  + ++    P+ K 
Sbjct: 51  SAIAIDSDSGQILYAKNATKTLPIASMTKLVTVYLTLQAIKNHKLSWDQKVKPTAPIVKV 110

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A     S + LK    +T  Q   A +  SAN  +   G+ I+GS+K F   M  + KK 
Sbjct: 111 ANNAEYSNVPLKLGHSYTIRQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRAQVKKW 170

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++     A GL + N                 +A+D AI+G  L   FP+  +   + 
Sbjct: 171 GIEDAKIYTACGLPNGNLGKDAYPGVNKNAENTMSAKDMAIVGQKLISAFPEVLETTRLA 230

Query: 216 KFRYRNRI----ITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              +++      + N N +L      ++ + +DG+KTG T  +G   + ++++    ++ 
Sbjct: 231 HLNFKDAGHVTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVQHNGARLIT 290

Query: 266 VVMGMPTSQERD 277
           VVMG   ++ RD
Sbjct: 291 VVMG---ARHRD 299


>gi|268319018|ref|YP_003292674.1| hypothetical protein FI9785_527 [Lactobacillus johnsonii FI9785]
 gi|262397393|emb|CAX66407.1| dacA [Lactobacillus johnsonii FI9785]
          Length = 308

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 107/220 (48%), Gaps = 21/220 (9%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT--QNP--SKLYLKEKTYFTTEQGIL 133
           AS+TK++T+Y+  + ++ KK+  +T +  ++       NP  + + L+    +T  +   
Sbjct: 76  ASMTKLLTVYLTLQAIKEKKISWDTTVTPTQEIVDLGSNPDYASVPLRLGQKYTVRELYY 135

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ----IT 189
           A + +SAN+ +      +SGSE  F   MS +A+K  + N  +    GL DK +    +T
Sbjct: 136 AALIKSANNAARLLAIAVSGSETNFLNQMSQQARKWKLNNAKFVTVDGLPDKKKNFLGMT 195

Query: 190 T-------ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH------N 236
           T       A D AI+   L  N+P+      + +  ++N ++ N+NK+LN +        
Sbjct: 196 TTVENKMSANDMAIIARKLITNYPEILNTTKLARAYFQNTLMINNNKMLNGLSYYDSIFP 255

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           +DG+KTG T  +G     ++      ++ V++G     ER
Sbjct: 256 VDGLKTGTTDGAGSCFTCTVNKNGKRVITVILGAENDNER 295


>gi|149010495|ref|ZP_01831866.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP19-BS75]
 gi|147764976|gb|EDK71905.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP19-BS75]
          Length = 413

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 130/268 (48%), Gaps = 35/268 (13%)

Query: 33  KILFLSIIMISM--------ASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTK 82
           K +FL+++ +S+        A +     K++ I ++ N  ++  +++D  +P   AS+TK
Sbjct: 2   KKIFLTLLTVSLLGGASTAVAQDFTIAAKHA-IAVEANTGKIL-YEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S    +       S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEVSNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G + V +   K   ++ VV+
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVL 266


>gi|228983269|ref|ZP_04143484.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229153793|ref|ZP_04281925.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus ATCC 4342]
 gi|229194404|ref|ZP_04321209.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus m1293]
 gi|228589060|gb|EEK47073.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus m1293]
 gi|228629662|gb|EEK86357.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus ATCC 4342]
 gi|228776449|gb|EEM24800.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 443

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 115/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 48  AAILVEANSGKIVYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKV 107

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M+NK+K++
Sbjct: 108 SQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNNKSKEL 167

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 168 GLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 227

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 228 KKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 269


>gi|229102172|ref|ZP_04232882.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
 gi|228681242|gb|EEL35409.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
          Length = 378

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 106/215 (49%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 52  GKAEHEPQKIASITKIMTALLAAESGKMKEM-----VSVSNEAVRVEGSAIYLKPGQKVK 106

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 107 LEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGS 166

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYR--NRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  +K++    +    N +KL+   +    G KTG
Sbjct: 167 HYSSAYDMALLTKYAMGN-ETFKKIFGTKKYKSNSWDYPWKNKHKLVTSYYEFATGGKTG 225

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 226 FTKKAGRTLVTTAS--KDGLDLIVVTLSASSDWDD 258


>gi|262047823|ref|ZP_06020773.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus
           MV-3A-US]
 gi|260571880|gb|EEX28451.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus
           MV-3A-US]
          Length = 433

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 119/252 (47%), Gaps = 32/252 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKT 109
           S+I ID +  Q+   K      P AS+TK++T+Y+  + +++ KL  + ++    P+ K 
Sbjct: 51  SAIAIDSDSGQILYAKNATKTLPIASMTKLVTVYLTLQAIKNHKLSWDQKVKPTAPIVKV 110

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A     S + LK    +T  Q   A +  SAN  +   G+ I+GS+K F   M  + KK 
Sbjct: 111 ANNAEYSNVPLKLGHSYTIRQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRAQVKKW 170

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++     A GL + N                 +A+D AI+G  L   FP+  +   + 
Sbjct: 171 GIEDAKIYTACGLPNGNLGKDAYPGVNKNAENTMSAKDMAIVGQKLISAFPEVLETTRLA 230

Query: 216 KFRYRNRI----ITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              +++      + N N +L      ++ + +DG+KTG T  +G   + ++++    ++ 
Sbjct: 231 HLNFKDAGHVTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVQHNGARLIT 290

Query: 266 VVMGMPTSQERD 277
           VVMG   ++ RD
Sbjct: 291 VVMG---ARHRD 299


>gi|293400703|ref|ZP_06644848.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305729|gb|EFE46973.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 332

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 100/201 (49%), Gaps = 19/201 (9%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS++K+MT  +  E     K  LN      K       S +YLKE    +    +  L+ 
Sbjct: 49  ASISKVMTAILALE-----KGDLNATWKTGKELKQAYGSMIYLKEGQQVSLRSLLYGLML 103

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--HDKNQITTARDQA 195
           RS ND +      I  ++KKF  +M+ KAK+IGM +T + N SGL   D   +++A D A
Sbjct: 104 RSGNDAALEIALHIGKTQKKFVQMMNEKAKEIGMLDTHFANPSGLDEEDGGNLSSAYDMA 163

Query: 196 ILGILLRKNFPQYYK------YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
           +L     KN P + +      Y S   +R+RN+     NKLL +       KTG+T+ +G
Sbjct: 164 LLMSYAMKN-PAFREISGTKYYTSEWNYRWRNK-----NKLLFEYPFAIAGKTGFTKKAG 217

Query: 250 FNIVTSLRYKDDPIVAVVMGM 270
             ++++ ++++   V V +GM
Sbjct: 218 RTLISAAKHENVENVIVTLGM 238


>gi|300362213|ref|ZP_07058390.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus gasseri
           JV-V03]
 gi|300354832|gb|EFJ70703.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus gasseri
           JV-V03]
          Length = 317

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 115/246 (46%), Gaps = 26/246 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT--AA 111
           +++ ID     +   K      P AS+TK++T Y+  + ++ KK+  +T +  ++     
Sbjct: 61  AAVAIDAKNENVIYAKNANQSLPIASMTKLLTAYLTLKAIKEKKISWDTTVSPTQEIINL 120

Query: 112 TQNPS----KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
           + NP      L L +K  +T  +   A + +SAN+ +      +SGSE  F   M  +A 
Sbjct: 121 SSNPDYAGVPLSLGQK--YTVRELYDAALIKSANNAARMLAIAVSGSETNFLNQMRQQAN 178

Query: 168 KIGMQNTIYKNASGLHDKNQ----ITT-------ARDQAILGILLRKNFPQYYKYFSIRK 216
           K  + N       GL +KN+    +TT       A D AI+   L  ++P+      + K
Sbjct: 179 KWKLHNVKLVTVDGLPEKNKNFLGMTTTIENKMSANDMAIIARKLVTDYPEVLSTTKVAK 238

Query: 217 FRYRNRIITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             +RN ++TN NK+L+ + +      +DG+KTG T  +G     ++   +  ++ V++G 
Sbjct: 239 SDFRNTLMTNSNKMLSGLSDYDPNYPVDGLKTGTTDGAGACFTCTMDKNNKRVITVILGA 298

Query: 271 PTSQER 276
               ER
Sbjct: 299 QNDNER 304


>gi|225858672|ref|YP_002740182.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           70585]
 gi|225720794|gb|ACO16648.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           70585]
          Length = 413

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 116/237 (48%), Gaps = 26/237 (10%)

Query: 56  SIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           +I ++ N  ++  +++D  +P   AS+TK++T+Y+++E L++  + L+T + +S    + 
Sbjct: 32  AIAVEANTGKIL-YEKDATQPVEIASITKLITVYLVYEALENGSITLSTPVDISDYPYQL 90

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S + ++ + Y T E+ + A +  SAN  + A  E I+GSEK F  +M  K  + 
Sbjct: 91  TTNSEASNIPMEARNY-TVEELLEATLVSSANSAAIALAEKIAGSEKDFVDMMRAKLLEW 149

Query: 170 GMQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+Q+    N +GL+              D+    +A D AI+   L K +PQ  +     
Sbjct: 150 GIQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYDVAIVARNLIKKYPQVLEITKKP 209

Query: 216 KFRYRNRIITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              +    IT+ N +L  M       DG+KTG T  +G + V +   K   ++ VV+
Sbjct: 210 SSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKGMRVITVVL 266


>gi|16804849|ref|NP_466334.1| hypothetical protein lmo2812 [Listeria monocytogenes EGD-e]
 gi|224502774|ref|ZP_03671081.1| hypothetical protein LmonFR_09674 [Listeria monocytogenes FSL
           R2-561]
 gi|16412312|emb|CAD01025.1| lmo2812 [Listeria monocytogenes EGD-e]
          Length = 272

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 110/206 (53%), Gaps = 12/206 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL---KEKTYFTTEQGILA 134
           ASL+K+MT +++ E + + +L  + ++ + +     +PS + L    +K  ++      A
Sbjct: 57  ASLSKLMTAFLVLEAVDNNELSWDEKLDLVR---LDDPSAVSLYAITQKRTWSVRDLYSA 113

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGL--HDKNQITTA 191
           ++T SAND +   G+ + G++  F   M+N+AKK+GM + T + +ASGL    K+ ++T 
Sbjct: 114 MLTMSANDAAETLGDRLDGAD--FPKEMNNQAKKLGMSSKTTFVSASGLDVDGKSAVSTT 171

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           +D  +L   L    P+  +  S       +   + + N LL  +  +DG+KTG+T  +G+
Sbjct: 172 KDLFLLSSKLISTHPEVLETTSKPTVTTDKGAKLESTNDLLGSIQGLDGLKTGFTDEAGY 231

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQER 276
             + +       ++++V+   T+++R
Sbjct: 232 CFIGTAERGGKRVISIVLDAGTAEKR 257


>gi|167766432|ref|ZP_02438485.1| hypothetical protein CLOSS21_00937 [Clostridium sp. SS2/1]
 gi|317498290|ref|ZP_07956589.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|167711841|gb|EDS22420.1| hypothetical protein CLOSS21_00937 [Clostridium sp. SS2/1]
 gi|291560872|emb|CBL39672.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
           SSC/2]
 gi|316894499|gb|EFV16682.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 374

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 112/234 (47%), Gaps = 34/234 (14%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH---------LNTQI 104
           S IVID    ++   K+ D+  YPAS+TK++T  +  E   +K L+         +N+  
Sbjct: 52  SGIVIDAKSGKILYAKKVDDRHYPASITKILTTLVAIE--NNKDLYDEVTFSSYAVNSIE 109

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
           P S     +   K+ L +         + A++  SAN+      E  +G+ KKF  LM+ 
Sbjct: 110 PGSTHIGIKAGEKIPLIDV--------LNAIMLESANEACNGAAEHTAGTTKKFVELMNK 161

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----- 219
           K K++G   + +   +GLHD +   TARD A +     +N  + ++Y + +   Y     
Sbjct: 162 KVKELGCTGSHFVTTNGLHDDDHYVTARDMAKISKAALEN--ETFRYVACKPNYYIAPTN 219

Query: 220 ---RNRIITNHNKLLNK-MHNIDGI---KTGYTRNSGFNIVTSLRYKDDPIVAV 266
                + + NH+K++ + M N DG+   KTGYT  +G  +VT  +  D  ++ V
Sbjct: 220 KDKHGKELWNHHKMVKRTMFNYDGVEGGKTGYTTKAGGTLVTFAKRGDQELIVV 273


>gi|322517678|ref|ZP_08070541.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           vestibularis ATCC 49124]
 gi|322123666|gb|EFX95258.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           vestibularis ATCC 49124]
          Length = 422

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 132/290 (45%), Gaps = 34/290 (11%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEKTYFTTE 129
           P   AS+TK++T Y++++ +   K++ +T++ +S            S + L  + Y T +
Sbjct: 63  PNGVASMTKILTAYMVYKAVDQGKINWDTEVNISDYPFNLTVDSEVSNIPLDSRKY-TVK 121

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH------ 183
           Q + A +  SAN  + A  E ISG+E  F   M+ + K+ G+ +    NASGL+      
Sbjct: 122 QLLDATLISSANSAAIALAEKISGTESAFVDTMTAQLKEWGITDAKLFNASGLNNKYLGD 181

Query: 184 --------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNHNKLLNKM 234
                   D     +A D AI+   L K++PQ  +     +  + R+  +T HN +L   
Sbjct: 182 NRYPGSKPDDENTMSALDVAIIADHLIKDYPQVLEITKQTETDFERDNKLTTHNYMLEGQ 241

Query: 235 HN----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA--------LE 282
            N    +DG+KTG T  +G + V         ++ VVM      E D+ A        L+
Sbjct: 242 DNYREGVDGLKTGTTELAGASFVAHSNEHGMSLITVVMNADNGGE-DEAARFTATNELLD 300

Query: 283 LITSFLEKKTLKHQ-QTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
            +T   E KTL  + Q  +K+++         +  KL+      +KI++K
Sbjct: 301 YVTQNWEIKTLNTKGQIVKKNDIKVADGDSQTISAKLESDLIVVQKINSK 350


>gi|160892713|ref|ZP_02073503.1| hypothetical protein CLOL250_00243 [Clostridium sp. L2-50]
 gi|156865754|gb|EDO59185.1| hypothetical protein CLOL250_00243 [Clostridium sp. L2-50]
          Length = 451

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 123/245 (50%), Gaps = 30/245 (12%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           ++LHA    S+I++D  KN    + +  +E R  AS TK++T  +  EY     +     
Sbjct: 81  NDLHA---LSAILLD-GKNGRVLYDKAGEEVRANASTTKILTCILALEYGDPDDI----- 131

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           + VS  AA     +L ++E   +  +  + +L+  S ND + A  E+I GS + FA LM+
Sbjct: 132 VIVSSYAAKMPDVQLNIREGEEYRLKDLLYSLMLESHNDSAVAIAEYIGGSVEAFADLMN 191

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQI----TTARDQA-ILGILLRKNFPQYYKYFSI-RKF 217
            KA ++G  NT +   +GL  K++     TTA D A I+   +R++ P+  ++ +I R  
Sbjct: 192 RKAIEVGCTNTHFITPNGLDAKDEYGIHGTTAEDLARIMRYCIRES-PKREQFLAITRTA 250

Query: 218 RY--------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM- 268
            Y        R+   +NHN  LN M      KTG+T ++G+  V +L  +D  I+ V + 
Sbjct: 251 TYSFTNVGGTRSFSCSNHNAFLNMMDGALTGKTGFTGSAGYCYVGALE-RDGKILIVALL 309

Query: 269 --GMP 271
             G P
Sbjct: 310 GCGWP 314


>gi|148984605|ref|ZP_01817873.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP3-BS71]
 gi|147922996|gb|EDK74111.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP3-BS71]
          Length = 406

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 116/237 (48%), Gaps = 26/237 (10%)

Query: 56  SIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           +I ++ N  ++  +++D  +P   AS+TK++T+Y+++E L++  + L+T + +S    + 
Sbjct: 25  AIAVEANTGKIL-YEKDATQPVEIASITKLITVYLVYEALENGSITLSTPVDISDYPYQL 83

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S + ++ + Y T E+ + A +  SAN  + A  E I+GSEK F  +M  K  + 
Sbjct: 84  TTNSEASNIPMEARNY-TVEELLEATLVSSANSAAIALAEKIAGSEKDFVDMMRAKLLEW 142

Query: 170 GMQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+Q+    N +GL+              D+    +A D AI+   L K +PQ  +     
Sbjct: 143 GIQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYDVAIVARNLIKKYPQVLEITKKP 202

Query: 216 KFRYRNRIITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              +    IT+ N +L  M       DG+KTG T  +G + V +   K   ++ VV+
Sbjct: 203 SSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKGMRVITVVL 259


>gi|148988291|ref|ZP_01819738.1| penicillin-binding protein 3/D-alanyl-D-alanine carboxypeptidase
           [Streptococcus pneumoniae SP6-BS73]
 gi|147925972|gb|EDK77046.1| penicillin-binding protein 3/D-alanyl-D-alanine carboxypeptidase
           [Streptococcus pneumoniae SP6-BS73]
          Length = 406

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 116/237 (48%), Gaps = 26/237 (10%)

Query: 56  SIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           +I ++ N  ++  +++D  +P   AS+TK++T+Y+++E L++  + L+T + +S    + 
Sbjct: 25  AIAVEANTGKIL-YEKDATQPVEIASITKLITVYLVYEALENGSITLSTPVDISDYPYQL 83

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S + ++ + Y T E+ + A +  SAN  + A  E I+GSEK F  +M  K  + 
Sbjct: 84  TTNSEASNIPMEARNY-TVEELLEATLVSSANSAAIALAEKIAGSEKDFVDMMRAKLLEW 142

Query: 170 GMQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+Q+    N +GL+              D+    +A D AI+   L K +PQ  +     
Sbjct: 143 GIQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYDVAIVARNLIKKYPQVLEITKKP 202

Query: 216 KFRYRNRIITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              +    IT+ N +L  M       DG+KTG T  +G + V +   K   ++ VV+
Sbjct: 203 SSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKGMRVITVVL 259


>gi|111657944|ref|ZP_01408652.1| hypothetical protein SpneT_02000863 [Streptococcus pneumoniae
           TIGR4]
 gi|149007183|ref|ZP_01830847.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP18-BS74]
 gi|147761221|gb|EDK68188.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP18-BS74]
          Length = 406

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 116/237 (48%), Gaps = 26/237 (10%)

Query: 56  SIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           +I ++ N  ++  +++D  +P   AS+TK++T+Y+++E L++  + L+T + +S    + 
Sbjct: 25  AIAVEANTGKIL-YEKDATQPVEIASITKLITVYLVYEALENGSITLSTPVDISDYPYQL 83

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S + ++ + Y T E+ + A +  SAN  + A  E I+GSEK F  +M  K  + 
Sbjct: 84  TTNSEASNIPMEARNY-TVEELLEATLVSSANSAAIALAEKIAGSEKDFVDMMRAKLLEW 142

Query: 170 GMQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+Q+    N +GL+              D+    +A D AI+   L K +PQ  +     
Sbjct: 143 GIQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYDVAIVARNLIKKYPQVLEITKKP 202

Query: 216 KFRYRNRIITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              +    IT+ N +L  M       DG+KTG T  +G + V +   K   ++ VV+
Sbjct: 203 SSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKGMRVITVVL 259


>gi|332076153|gb|EGI86619.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           GA41301]
          Length = 406

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 116/237 (48%), Gaps = 26/237 (10%)

Query: 56  SIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           +I ++ N  ++  +++D  +P   AS+TK++T+Y+++E L++  + L+T + +S    + 
Sbjct: 25  AIAVEANTGKIL-YEKDATQPVEIASITKLITVYLVYEALENGSITLSTPVDISDYPYQL 83

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S + ++ + Y T E+ + A +  SAN  + A  E I+GSEK F  +M  K  + 
Sbjct: 84  TTNSEASNIPMEARNY-TVEELLEATLVSSANSAAIALAEKIAGSEKDFVDMMRAKLLEW 142

Query: 170 GMQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+Q+    N +GL+              D+    +A D AI+   L K +PQ  +     
Sbjct: 143 GIQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYDVAIVARNLIKKYPQVLEITKKP 202

Query: 216 KFRYRNRIITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              +    IT+ N +L  M       DG+KTG T  +G + V +   K   ++ VV+
Sbjct: 203 SSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKGMRVITVVL 259


>gi|312862634|ref|ZP_07722875.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           vestibularis F0396]
 gi|311101894|gb|EFQ60096.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           vestibularis F0396]
          Length = 417

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 156/341 (45%), Gaps = 47/341 (13%)

Query: 34  ILFLSIIMISMASELHAKPKYS--------SIVIDVNKNQMTGFKQDE--PRYPASLTKM 83
           I+ +++I+I +A+   A+ +          +I I+    ++  +++D   P   AS+TK+
Sbjct: 9   IIMITLILIGLATPALAQEQTDDFNVAAKHAIAIETTTGKVL-YEKDATTPDGVASMTKI 67

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +T Y++++ +   K++ +T++ +S            S + L  + Y T +Q + A +  S
Sbjct: 68  LTAYMVYKAVDQGKINWDTEVDISDYPFNLTVDSEVSNIPLDSRKY-TVKQLLDATLISS 126

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DK 185
           AN  + A  E ISG+E  F   M+ + K+ G+ +    NASGL+              D 
Sbjct: 127 ANSAAIALAEKISGTESAFVDTMTAQLKEWGITDAKLFNASGLNNKYLGDNRYPGSKPDD 186

Query: 186 NQITTARDQAILGILLRKNFPQYYKYF--SIRKFRYRNRIITNHNKLLNKMHN----IDG 239
               +A D AI+   L K++PQ  +    +   F   N+ +T HN +L    N    +DG
Sbjct: 187 ENTMSALDVAIIADHLIKDYPQVLEITKQTETDFEGDNK-LTTHNYMLEGQDNYREGVDG 245

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA--------LELITSFLEKK 291
           +KTG T  +G + V         ++ +VM      E D+ A        L+ +T   E K
Sbjct: 246 LKTGTTELAGASFVAHSNEHGMSLITIVMNADNGGE-DEAARFTATNELLDYVTQNWEIK 304

Query: 292 TLKHQ-QTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
           TL  + Q  +K+++         +  KL+      +KI++K
Sbjct: 305 TLNTKGQIVKKNDIKVADRDSQTISAKLESDLIVVQKINSK 345


>gi|295425352|ref|ZP_06818055.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus
           amylolyticus DSM 11664]
 gi|295065128|gb|EFG56033.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus
           amylolyticus DSM 11664]
          Length = 432

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 113/244 (46%), Gaps = 29/244 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKT 109
           S++ ID    Q+   K  +   P AS+TK++T+Y+  + +++K++   T++     + K 
Sbjct: 50  SALAIDSKTGQILYAKNADKTLPIASMTKLVTVYLTLQAIKNKQISWTTKVKPTATIVKV 109

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A     S + LK+   +T +Q   A +  SAN  +    + +SGS+  F   M  + KK 
Sbjct: 110 ANNSEYSNVPLKKGHSYTIKQLYQATLIESANGAAMCLAQAVSGSQVAFVKKMRAQVKKW 169

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+ +       GL + N                 +A+D AI+G  L  +FP   K  SI 
Sbjct: 170 GINDAKIYTVCGLPNGNLGSDAYPGVSKNAENTMSAKDMAIIGQRLINDFPAVLKTTSIA 229

Query: 216 KFRYRNRIIT----NHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           K  ++++  T    N N +L  +        +DG+KTG T  +G   + +++     I+ 
Sbjct: 230 KLAFKDQGKTTQMENFNWMLKGLSQYDANLKVDGLKTGTTDAAGACFIGTIKKNGSRIIT 289

Query: 266 VVMG 269
           VVMG
Sbjct: 290 VVMG 293


>gi|196043568|ref|ZP_03110806.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           03BB108]
 gi|196025877|gb|EDX64546.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           03BB108]
          Length = 338

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 120/229 (52%), Gaps = 17/229 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S+I+ID N  ++   K +E     A+L+K+MT YI+ E L    + L+  + +S     A
Sbjct: 37  SAILIDANSGEVVYKKNEETSIQSATLSKLMTEYIVLEQLDKGNIQLDEVVKISNEVFRA 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             +P ++  K+KT  T    + AL+    N  + A  E I+G+E  F  LM+ KAK++ +
Sbjct: 97  ETSPIQVTSKDKT--TVRDLLHALLLTGNNRSTLALAEHIAGNEDNFTQLMNEKAKQLKL 154

Query: 172 -QNTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIIT 225
            Q   + NA+G++   +K   TTA +   L   L  +FP        +  +F +++  + 
Sbjct: 155 SQPFPFLNATGMNNGTNKLSTTTAIEVGKLATRLVTDFPDVLNVTKLTSYQFTFKDTKVF 214

Query: 226 NHNKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N NK+   LN   K+  +DG++T ++ N  ++ V++ +  D  +++V++
Sbjct: 215 NTNKMIYSLNKNIKLQGVDGLQTSFSTNGNYSFVSTAQRGDTRLISVIL 263


>gi|169831557|ref|YP_001717539.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638401|gb|ACA59907.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 376

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 105/224 (46%), Gaps = 17/224 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           +++++DV    +   K +  R  PASLTK+MT  +  E  +   +     + VS+ AA  
Sbjct: 43  AAVLVDVETGHVLFAKNERQRKDPASLTKVMTAIVALEAGRPGDV-----VTVSERAARF 97

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S + L+     T E  + A +  SAND + A  E ++G    F   M+ KA+++G  
Sbjct: 98  GRGSVIDLRAGEKITLENLLKAALIMSANDSTIAIAEHVAGDYDLFVRWMNLKARQLGAH 157

Query: 173 NTIYKNASGLHDKNQITTARDQA-ILGILLRKNFPQYYKYFSIRKFRY------RNRIIT 225
           +T + N  G    N  +TA D A I    LR   PQ+      R+         R R I 
Sbjct: 158 DTRFMNTHGFTHPNHYSTAADLAEITRYALR--IPQFAALVRTREITVYWRDSDRKRTIR 215

Query: 226 NHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N N+LL +    IDG+KTG T  +G  ++ S       ++AVV+
Sbjct: 216 NTNRLLRSDFEGIDGVKTGTTSAAGHCLIASATRDGRRVLAVVL 259


>gi|322388019|ref|ZP_08061626.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus infantis
           ATCC 700779]
 gi|321141292|gb|EFX36790.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus infantis
           ATCC 700779]
          Length = 413

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 133/269 (49%), Gaps = 37/269 (13%)

Query: 33  KILFLSII-MISMAS-------ELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTK 82
           K LFL++I +IS  S       +     K++ I ++ N  ++  +++D  +P   AS++K
Sbjct: 2   KKLFLTLITLISFGSATTVFAQDFDVAAKHA-IAVEANSGKIL-YEKDATQPVEIASISK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L+  K+ L+T + +S    +       S + ++ + Y T E+ + A +  
Sbjct: 60  LLTVYLVYEALEQGKITLSTPVEISDYPYQLTTNSEASNVPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------- 183
           SAN  + A  E ++GSEK F  +M  K  + G+Q+    N +GL+               
Sbjct: 119 SANSAAIALAEKVAGSEKDFVDMMKAKLLEWGIQDATLVNTTGLNNETLGNNIYPGSKKD 178

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDG 239
           D+N++ +A D A++   L   +PQ  +        +    I + N +L+ M      IDG
Sbjct: 179 DENKM-SAYDVAVVARNLILKYPQVLEITKKPSSTFAGMTIHSTNSMLDGMPAYRGGIDG 237

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +KTG T  +G + V +   K   I+ VV+
Sbjct: 238 LKTGNTDKAGASFVGTTVEKGMRIITVVL 266


>gi|312862810|ref|ZP_07723050.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           vestibularis F0396]
 gi|322516764|ref|ZP_08069670.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           vestibularis ATCC 49124]
 gi|311101670|gb|EFQ59873.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           vestibularis F0396]
 gi|322124686|gb|EFX96138.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           vestibularis ATCC 49124]
          Length = 448

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 128/274 (46%), Gaps = 36/274 (13%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           A+E + +PK + ++     + +     DE R PAS++K MTLY++FE +   ++  +T I
Sbjct: 38  ATEAY-RPKSTLLIDGTTGDVLWEENADEIRDPASMSKAMTLYLVFEAMSKGEISEDTVI 96

Query: 105 PVSKTAATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KK 157
             + T   Q  + +Y      +     +T  + I      S+N  +     +++ +   K
Sbjct: 97  --TATPTDQAIADIYEISNNKIVAGVDYTVSELITMTAVPSSNVTTVMLANYLTNNNPDK 154

Query: 158 FAILMSNKAKKIGMQNTIYKNASGL-------------HDKNQI--TTARDQAILGILLR 202
           +  +M+ K+K++GM NT + NASG              +D NQ   TTARD AI+     
Sbjct: 155 WLDMMNEKSKELGMTNTKWFNASGAVAVAFKGYYSPQRYDNNQTNQTTARDLAIMTYNFI 214

Query: 203 KNFPQYYKYFS-----IRKFRYRNRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIV 253
           K +P+  KY S     ++K          +N  +      +  +DG+KTG +    FN +
Sbjct: 215 KKYPKILKYTSKPVVTVKKGTPYEETFETYNYSIPGAKYGIDGVDGLKTGSSPEGAFNYI 274

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
            +++  +  ++AV+MG  +    DQ   E+  +F
Sbjct: 275 DTIKRGNQRMIAVIMG--SGDWSDQTGEEIRHTF 306


>gi|38142311|dbj|BAD00958.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142319|dbj|BAD00962.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|332202728|gb|EGJ16797.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           GA41317]
          Length = 413

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 129/268 (48%), Gaps = 35/268 (13%)

Query: 33  KILFLSIIMISM--------ASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTK 82
           K +FL+++ +S+        A +     K++ I ++ N  ++  +++D  +P   AS+TK
Sbjct: 2   KKIFLTLLTVSLLGGASTAVAQDFTIAAKHA-IAVEANTGKIL-YEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y+++E L++  + L+T + +S    +       S + ++ + Y T E+ + A +  
Sbjct: 60  LITAYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G + V +   K   ++ VV+
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVL 266


>gi|315639990|ref|ZP_07895117.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus italicus DSM
           15952]
 gi|315484252|gb|EFU74721.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus italicus DSM
           15952]
          Length = 423

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 115/230 (50%), Gaps = 31/230 (13%)

Query: 69  FKQDE--PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK--TAATQNP--SKLYLKE 122
           ++QD   P + AS TK++++YII++ +++ KL +  Q+ +S   +A +QN   S + L E
Sbjct: 51  YEQDATTPLHIASTTKLLSMYIIYDQIRTGKLSMTDQVTISAETSALSQNWQLSNVLLYE 110

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN------TIY 176
              ++ +  I A    SAN    A  E ++GSE  F  LM  +    G+ +      T  
Sbjct: 111 GQSYSVKNLIEAGFLESANAAVMALAEKVAGSEATFVDLMRAQLTTWGITDGTIVTSTGL 170

Query: 177 KNA---------SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNR 222
            NA         SG  ++NQ+ +A+D AI+   L ++FP+  +  S  +  +      N 
Sbjct: 171 NNAFLGDNRYPGSGAEEENQL-SAKDLAIVARHLLQDFPEVLQITSQSQLTFAEPTGENL 229

Query: 223 IITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            + N N++L  M      +DG+KTG T  +G   V +++  D  ++ VV+
Sbjct: 230 ELENTNQMLAGMAVATDGVDGLKTGTTDLAGACFVGTVKRGDTRLITVVL 279


>gi|284800301|ref|YP_003412166.1| hypothetical protein LM5578_0046 [Listeria monocytogenes 08-5578]
 gi|284993486|ref|YP_003415254.1| hypothetical protein LM5923_0046 [Listeria monocytogenes 08-5923]
 gi|284055863|gb|ADB66804.1| hypothetical protein LM5578_0046 [Listeria monocytogenes 08-5578]
 gi|284058953|gb|ADB69892.1| hypothetical protein LM5923_0046 [Listeria monocytogenes 08-5923]
          Length = 272

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 112/214 (52%), Gaps = 12/214 (5%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL---KEKTYF 126
           K D+    ASLTK+MT +++ E + + +L  + ++ + +     +PS + L    +K  +
Sbjct: 49  KTDKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLNLVR---LDDPSAVSLYAITQKRTW 105

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGL--H 183
           +      A++T SAND +   G+ + G+   F   M+N+AKK+GM + T + +ASGL   
Sbjct: 106 SVRDLYSAMLTMSANDAAETLGDRLDGA--NFPKEMNNQAKKLGMSSKTTFVSASGLDVD 163

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNHNKLLNKMHNIDGIKT 242
            K+ ++T +D  +L   L    P+  +  S       +   + + N LL  +  +DG+KT
Sbjct: 164 GKSAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDKGAKLESTNDLLGSIQGLDGLKT 223

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           G+T  +G+  + +       ++++V+   T+++R
Sbjct: 224 GFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKR 257


>gi|291521155|emb|CBK79448.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus catus GD/7]
          Length = 438

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 107/230 (46%), Gaps = 22/230 (9%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++ VIDV+  ++  +K  D+  YPAS+TK++T  ++ E       +L+  I  S+     
Sbjct: 69  AACVIDVDSGEILYYKNMDDRHYPASITKVLTGLLLIE-----NANLDDTITFSQDCWNG 123

Query: 114 ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
               N   + + +    T    + A++  SAN+V     +F+SGS   F  LM+ +AK +
Sbjct: 124 LNYYNDMNIGILDGEQLTVNDALHAILMSSANEVCNGAAKFVSGSVSAFCDLMNERAKAL 183

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR------- 222
           G  NT + N +GLHD +  T+A D A++     +N P + +     ++   +        
Sbjct: 184 GCTNTHFVNPNGLHDPDHYTSAHDMALISREAIQN-PIFREITGCTEYTVASTNLRPEGF 242

Query: 223 -IITNHNKLLNKMHNID---GIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            +   H  L+   ++ D   G KTGYT  +   +VT        +  VVM
Sbjct: 243 PLSHKHQMLMYTKYHYDACIGGKTGYTSEAKNTLVTYAEKDGHTLACVVM 292


>gi|291458267|ref|ZP_06597657.1| serine-type D-Ala-D-Ala carboxypeptidase [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291418800|gb|EFE92519.1| serine-type D-Ala-D-Ala carboxypeptidase [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 528

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 121/247 (48%), Gaps = 24/247 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
            +I+ID + N +   K +   Y PAS+TK++T  ++ E++++    L+ ++  S +A + 
Sbjct: 49  GAILIDSDSNAVLYAKNEHEHYFPASITKVLTAVVVLEHVKN----LDEKLTFSSSATSG 104

Query: 113 ---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
               N + +        +    + +L+  SAND + A  E ++GS + FA LM+ KA ++
Sbjct: 105 NLEANSTVIGAVPGDKLSVRDCLYSLLLHSANDCANALAEHVAGSNEAFAELMNQKAAEL 164

Query: 170 GMQNTIYKNASGLHDKNQITTARDQA-ILGILLRK------NFPQYYKYFSIRKF----R 218
           G  ++ + N SGL +    T+  D A IL   ++       +  Q Y +  I K+     
Sbjct: 165 GCTDSHFMNPSGLDNPEHYTSCADMAKILQYAIKNPTFRQIDSTQVYTHAPISKYPDIGA 224

Query: 219 YRNRIITNHNKLLNKMHNI-DGI---KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
             N I  +H+ +     +  +G+   KTGYT  +G  +VT+ +  +  ++ V++    SQ
Sbjct: 225 KENTIYAHHHMMRRAYRDFYNGVFAGKTGYTMTAGNTLVTACKRNNMTLICVILNGHHSQ 284

Query: 275 ERDQKAL 281
             D + L
Sbjct: 285 YSDTRKL 291


>gi|229060227|ref|ZP_04197596.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
 gi|228719109|gb|EEL70721.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
          Length = 338

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 128/256 (50%), Gaps = 31/256 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDE--PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S+++ID N  ++  +K++E  P   A+L+K+MT YI+ E L   K+ L+  + +S     
Sbjct: 37  SALLIDTNSGEIV-YKKNESTPIQSATLSKLMTEYIVMEQLHDGKIQLDESVQISNDVFQ 95

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM- 171
              S +++      T    +  L+    N  +    E I+G+E  F +LM+ KAK++ + 
Sbjct: 96  TETSPIHVTSNDKTTVRDLLNTLLLTGNNCSALELAEHIAGNEANFTMLMNEKAKQLKLS 155

Query: 172 QNTIYKNASGLH---DKNQITTARDQAILGILLRKNFPQYYKYFSIRK-----FRYRNRI 223
           Q + + N++G++   +K  ITT  D A L   L K+FP      SI K     F +++  
Sbjct: 156 QPSPFLNSTGVNNEKNKQSITTTIDVANLAAQLVKDFP---DVLSITKLTSYQFNFKDFQ 212

Query: 224 ITNHNKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           + N NK+   LN   K+  +DG++T  + N  ++ V + +  D   ++VV+         
Sbjct: 213 VFNTNKMIYSLNENIKLQGVDGLQTSLSTNGNYSFVGTAKQGDTRFISVVL--------- 263

Query: 278 QKALELITSFLEKKTL 293
             A E  T+F+E K L
Sbjct: 264 -DANEENTAFVETKKL 278


>gi|307704894|ref|ZP_07641785.1| penicillin-binding protein 3 [Streptococcus mitis SK597]
 gi|307621508|gb|EFO00554.1| penicillin-binding protein 3 [Streptococcus mitis SK597]
          Length = 413

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 133/269 (49%), Gaps = 34/269 (12%)

Query: 31  MGKILF--LSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQD--EPRYPASLTK 82
           M KI+   LS+ +I  AS + A+        +I ++ N  ++  +++D  +P   AS+TK
Sbjct: 1   MKKIILTLLSLSVIGSASTVAAQDFNIAAKHAIAVEANTGKIL-YEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S    +       S + ++ + Y T E+ + A +  
Sbjct: 60  LLTVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNVPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------- 183
           SAN  + A  E I+GSEK F  +M  K  + G+++    N +GL+               
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIKDATVVNTTGLNNETLGDNIYPGSNKD 178

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDG 239
           D+N++ +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG
Sbjct: 179 DENKL-SAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDG 237

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +KTG T  +G + V +   K   ++ V++
Sbjct: 238 LKTGTTDKAGESFVGTTVEKGMRVITVIL 266


>gi|238852512|ref|ZP_04642924.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus gasseri
           202-4]
 gi|238834859|gb|EEQ27084.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus gasseri
           202-4]
          Length = 308

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 120/262 (45%), Gaps = 30/262 (11%)

Query: 43  SMASELHAKPK----YSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKK 97
           SM S  HA        S++ ID     +   K      P AS+TK++T Y+  + ++ KK
Sbjct: 36  SMPSNYHANQVDLNVKSAVAIDAKNGNVIYAKNANQSLPIASMTKLLTAYLTLKAIKEKK 95

Query: 98  LHLNTQIPVSKTAAT--QNPS----KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
           +  +T +  ++       NP      L L +K  +T ++   A + +SAN+ +      +
Sbjct: 96  ISWDTTVSPTQEIINLGSNPDYASVPLNLGQK--YTVKELYDAALIKSANNAARMLAIAV 153

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ----ITT-------ARDQAILGIL 200
           SG+E  F   M  +A K  + N  +    GL +K +    +TT       A D AI+   
Sbjct: 154 SGNETNFLNQMRQQANKWKLHNVKFVTVDGLPEKKKNFLGMTTTIENKMSANDMAIIARK 213

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVT 254
           L  ++P+      + K  +RN ++TN NK+LN + +      +DG+KTG T  +G     
Sbjct: 214 LVTDYPEVLNTTKVAKTYFRNTLMTNSNKMLNGLSDYDPNYPVDGLKTGTTDGAGSCFTC 273

Query: 255 SLRYKDDPIVAVVMGMPTSQER 276
           ++   +  ++ V++G     ER
Sbjct: 274 TVDKNNKRVITVILGAQNDNER 295


>gi|225378650|ref|ZP_03755871.1| hypothetical protein ROSEINA2194_04319 [Roseburia inulinivorans DSM
           16841]
 gi|225209487|gb|EEG91841.1| hypothetical protein ROSEINA2194_04319 [Roseburia inulinivorans DSM
           16841]
          Length = 461

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 25/215 (11%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKE-KTYFTTEQ 130
           DE  YPAS+TK+MT  +  E       +L+  +  S  A          ++     T EQ
Sbjct: 62  DEAHYPASITKIMTTLLALE-----NGNLSDMVTFSDDAINNTEGSGIARDYGEQMTLEQ 116

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  ++  SAN+ + A  E + G+ + F  +M+ KAK++G  NT + N  GL D+N  TT
Sbjct: 117 CLYGVMLESANECAYAVAEHVGGTVENFVDMMNAKAKELGCTNTHFANPHGLQDENHYTT 176

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKF--------RYRNRIITNHNKLLNKMHNID---- 238
           A D A++     +N  + ++     K              ++ NH+ +L   HN +    
Sbjct: 177 AHDMALIAQAAYQN--ETFRIIIGTKMYTIPPTNKHAEETVLRNHHDMLCTYHNANRKYL 234

Query: 239 -----GIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                G KTGYT  +   +VT        ++ VVM
Sbjct: 235 YPYCVGGKTGYTATANSTLVTYAEKDGMTLICVVM 269


>gi|55820182|ref|YP_138624.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein
           [Streptococcus thermophilus LMG 18311]
 gi|55736167|gb|AAV59809.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein
           [Streptococcus thermophilus LMG 18311]
          Length = 422

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 158/345 (45%), Gaps = 45/345 (13%)

Query: 34  ILFLSIIMISMASELHAKPKYSS--------IVIDVNKNQMTGFKQDE--PRYPASLTKM 83
           I+ +++I+I +A+   A+ +  S        I I+    ++  +++D   P   AS+TK+
Sbjct: 14  IIMIALILIGLATPALAQDQTDSFNVAAKHAIAIETTTGKVL-YEKDATTPDGVASMTKI 72

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +T Y++++ +   K+  +T++ +S            S + L  + Y T +Q + A +  S
Sbjct: 73  LTAYMVYKAVDQGKITWDTEVGISDYPFNLTVNSEVSNVPLDSRKY-TVKQLLDATLISS 131

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DK 185
           AN  + A  E ISG+E  F   M+ + K+ G+ +    NASGL+              D 
Sbjct: 132 ANSAAIALAEKISGTESTFVDTMTAQLKEWGITDAKLFNASGLNNKYLGDNRYPGSKPDD 191

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-NRIITNHNKLLNKMHN----IDGI 240
               +A D AI+   L K++PQ  +     +  +  +  +T HN +L    N    +DG+
Sbjct: 192 ENTMSALDIAIIADHLIKDYPQVLEITKQTEVDFEGDNELTTHNYMLEGQENYREGVDGL 251

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA--------LELITSFLEKKT 292
           KTG T  +G + V         ++ VVM      + D+ A        L+ +T   E KT
Sbjct: 252 KTGTTELAGASFVAHSNENGMSLITVVMNAYNGGD-DESARFTATNELLDYVTQNWEIKT 310

Query: 293 LK-HQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
           L  + Q  +K+++      +  +  +L+   +  +KI+++  S +
Sbjct: 311 LNTNGQIVKKNDIKVADGDRKTISARLESDLTVVQKINSRNDSVK 355


>gi|260584324|ref|ZP_05852071.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella elegans
           ATCC 700633]
 gi|260157842|gb|EEW92911.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella elegans
           ATCC 700633]
          Length = 442

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 112/226 (49%), Gaps = 27/226 (11%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYF 126
           QD+ R  AS++KM++ Y+I E +++ ++   T+IP+S+ A    A  + S + L     +
Sbjct: 44  QDDVRGIASMSKMVSQYLILEAIKNSEITWETKIPISERASKLSANYSLSNVPLWPNEKY 103

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           + ++   A    SAN  + A  E+++GSE K+   M  K +  G+ +    NA+GL +K 
Sbjct: 104 SIQELFEASSIYSANAATIAMAEYLAGSEAKWVERMKEKVESWGIHDATIVNATGLPNKY 163

Query: 187 QIT--------------TARDQAILGILLRKNFPQYYKYFSI--RKFRYRNRIIT---NH 227
             T              +AR  AI+   L  +FP+  K  S+  ++FR     +T   N 
Sbjct: 164 GTTEKNPDFGDEAENSMSARSVAIVARRLVLDFPEILKISSVATKEFRPGTAGVTKMDNF 223

Query: 228 NKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           N L+  +      ++G+KTG +  SG +I T+    +  ++ V MG
Sbjct: 224 NYLIPGLLFGYDGVNGLKTGTSEISGASITTTATRNNFSVIVVTMG 269


>gi|301299390|ref|ZP_07205670.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852996|gb|EFK80600.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 402

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 119/255 (46%), Gaps = 28/255 (10%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI- 104
           +L AK   S+I +D    Q+   K D+  YP AS++K++T YI+ + +   ++   T++ 
Sbjct: 22  DLEAK---SAIAVDAKTGQIIYAKDDKQTYPVASMSKLLTAYILLQAIHKGEITWETRVT 78

Query: 105 PVSKTAATQNPSKLY---LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
           P +      N ++L    L+E   +T  Q   A++  SAN  +   G  ISG++ KF   
Sbjct: 79  PTATEVDISNNTELTNVPLQEGHSYTIRQLYQAMLVGSANAATMLIGNAISGTQTKFIDK 138

Query: 162 MSNKAKKIGMQNTIYKNASGL------------HDKNQIT--TARDQAILGILLRKNFPQ 207
           M   AK +G+ +    +A+GL             D+N     + RD AI+   L K +P+
Sbjct: 139 MRETAKSLGITDAKIYSANGLTAKYLGDEIYPNTDENAENEFSVRDMAIISQKLIKEYPE 198

Query: 208 YYKYFSIRKFRYRNR----IITNHNKLLNKMHN--IDGIKTGYTRNSGFNIVTSLRYKDD 261
             +   + K  + +      + N N+LL    N  +DG+KTG +  +G+   ++      
Sbjct: 199 ILETTKLTKIDFNDNGEITTVNNTNELLQDDSNLEVDGLKTGTSDAAGYCFASTTNKDGH 258

Query: 262 PIVAVVMGMPTSQER 276
            I+ V+ G   +  R
Sbjct: 259 RIITVIAGAKDNDAR 273


>gi|229159188|ref|ZP_04287214.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus R309803]
 gi|228624269|gb|EEK81069.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus R309803]
          Length = 443

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 143/289 (49%), Gaps = 43/289 (14%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 48  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKV 107

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M+NKAK++
Sbjct: 108 SQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNNKAKEL 167

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYY------ 209
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+        
Sbjct: 168 GLKNYKFVNSTGLTNKDLKGMHPEGTTPDEENKMSAKDVATLAQHLLKDYPKVLDTAKIP 227

Query: 210 -KYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
            K F   K +++   + N N +L  +      +DG+KTG T  +G     ++      ++
Sbjct: 228 MKVFRPEKEQFK---MLNWNWMLKGLSKAYDGVDGLKTGSTPEAGECFTGTVERNGMRLI 284

Query: 265 AVVMGMPTSQER--DQKAL--------ELITSFLEKKTLKHQQTHRKDN 303
           +VV+   + Q R  + K L        E+   + +  ++K Q+T R +N
Sbjct: 285 SVVIKTNSRQARFDETKKLYDYGFANFEMKQMYKKDSSVKGQETLRVEN 333


>gi|312978130|ref|ZP_07789875.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus crispatus
           CTV-05]
 gi|310895105|gb|EFQ44174.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus crispatus
           CTV-05]
          Length = 433

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 119/252 (47%), Gaps = 32/252 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKT 109
           S+I ID +  Q+   K      P AS+TK++T+Y+  + +++ KL  + ++    P+ K 
Sbjct: 51  SAIAIDSDSGQILYAKNATKTLPIASMTKLVTVYLTLQAIKNHKLSWDQKVKPTAPIVKV 110

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A     S + LK    +T  Q   A +  SAN  +   G+ I+GS+K F   M  + KK 
Sbjct: 111 ANNAEYSNVPLKLGHSYTIRQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRAQVKKW 170

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++     A GL + N                 +A+D AI+G  L   FP+  +   + 
Sbjct: 171 GIEDAKIYTACGLPNGNLGKDAYPGVNKNAENTMSAKDMAIVGQKLISAFPEVLETTRLA 230

Query: 216 KFRYRNRI----ITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              +++      + N N +L      ++ + +DG+KTG T  +G   + ++++    ++ 
Sbjct: 231 HLNFKDAGHVTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVQHNGARLLT 290

Query: 266 VVMGMPTSQERD 277
           VVMG   ++ RD
Sbjct: 291 VVMG---ARHRD 299


>gi|153854350|ref|ZP_01995649.1| hypothetical protein DORLON_01644 [Dorea longicatena DSM 13814]
 gi|149753125|gb|EDM63056.1| hypothetical protein DORLON_01644 [Dorea longicatena DSM 13814]
          Length = 536

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 112/232 (48%), Gaps = 23/232 (9%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEY--LQSKKLHLNTQIPVSKTAA 111
           ++IV+D     +   K  DE  YPAS+TK++T  I  +Y  L  K    N  I   +   
Sbjct: 97  AAIVMDAGTGSILYAKNIDEHEYPASITKVLTSLIALKYGNLSDKVTFSNDCISFMQPG- 155

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI---SGSEKKFAIL-MSNKAK 167
               S + LKE    + EQ + A +  SAN+ + A  E +   +G +  + I  M+ + K
Sbjct: 156 ---DSSVGLKEGNVISLEQALYATLLASANEAAYAVAENVGKNAGHDYDWFIQQMNEECK 212

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY------RN 221
            +G +N+ + NA+GLHD N  T ARD A++G  + + +P++ K    + ++         
Sbjct: 213 SLGGKNSNFVNANGLHDDNHYTCARDMALIGREIWR-YPEFLKICQEQSYKIPASDTTEE 271

Query: 222 RIITNHNKLL-----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            +   H+K+L     N    +   KTGYT N+   ++T     +  +V VV+
Sbjct: 272 HVFPQHHKMLIKENKNYYQYVVAGKTGYTSNALSTLITLADNGNMKLVCVVL 323


>gi|229100800|ref|ZP_04231618.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-28]
 gi|228682607|gb|EEL36666.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-28]
          Length = 430

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 116/223 (52%), Gaps = 28/223 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS    K 
Sbjct: 34  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAHKI 93

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A+   SAN  + A GE ++G E  F  +M++KAK++
Sbjct: 94  SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALGEAVAGKEVNFVKMMNDKAKEL 153

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        ARD AIL   L K++P+      I 
Sbjct: 154 GLKNYKFVNSTGLTNKDLKGQHPEGTTPDEENKMSARDVAILAQHLIKDYPKTLDTAKIP 213

Query: 216 K--FRYRNRI---ITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  F+   +    + N N +L  +      +DG+KTG T  +G
Sbjct: 214 KKVFQEGGKYPINMDNWNWMLKGLVKQYDGVDGLKTGSTPEAG 256


>gi|52839376|emb|CAH57481.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|52839378|emb|CAH57482.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
          Length = 389

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 116/237 (48%), Gaps = 26/237 (10%)

Query: 56  SIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           +I ++ N  ++  +++D  +P   AS+TK++T+Y+++E L++  + L+T + +S    + 
Sbjct: 8   AIAVEANTGKIL-YEKDATQPVEIASITKLITVYLVYEALENGSITLSTPVDISDYPYQL 66

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S + ++ + Y T E+ + A +  SAN  + A  E I+GSEK F  +M  K  + 
Sbjct: 67  TTNSEASNIPMEARNY-TVEELLEATLVSSANSAAIALAEKIAGSEKDFVDMMRAKLLEW 125

Query: 170 GMQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+Q+    N +GL+              D+    +A D AI+   L K +PQ  +     
Sbjct: 126 GIQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYDVAIVARNLIKKYPQVLEITKKP 185

Query: 216 KFRYRNRIITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              +    IT+ N +L  M       DG+KTG T  +G + V +   K   ++ VV+
Sbjct: 186 SSTFARMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKGMRVITVVL 242


>gi|55822070|ref|YP_140511.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein
           [Streptococcus thermophilus CNRZ1066]
 gi|55738055|gb|AAV61696.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein
           [Streptococcus thermophilus CNRZ1066]
          Length = 422

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 158/345 (45%), Gaps = 45/345 (13%)

Query: 34  ILFLSIIMISMASELHAKPKYSS--------IVIDVNKNQMTGFKQDE--PRYPASLTKM 83
           I+ +++I+I +A+   A+ +  S        I I+    ++  +++D   P   AS+TK+
Sbjct: 14  IIMIALILIGLATPALAQDQTDSFNVAAKHAIAIETTTGKVL-YEKDATTPDGVASMTKI 72

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +T Y++++ +   K+  +T++ +S            S + L  + Y T +Q + A +  S
Sbjct: 73  LTAYMVYKAVDQGKITWDTEVGISDYPFNLTVNSEVSNVPLDSRKY-TVKQLLDATLISS 131

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DK 185
           AN  + A  E ISG+E  F   M+ + K+ G+ +    NASGL+              D 
Sbjct: 132 ANSAAIALAEKISGTESTFVDTMTAQLKEWGITDAKLFNASGLNNKYLGDNRYPGSKPDD 191

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-NRIITNHNKLLNKMHN----IDGI 240
               +A D AI+   L K++PQ  +     +  +  +  +T HN +L    N    +DG+
Sbjct: 192 ENTMSALDIAIIADHLIKDYPQVLEITKQTEVDFEGDNKLTTHNYMLEGQENYREGVDGL 251

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA--------LELITSFLEKKT 292
           KTG T  +G + V         ++ VVM      + D+ A        L+ +T   E KT
Sbjct: 252 KTGTTELAGASFVAHSNENGMSLITVVMNAYNGGD-DESARFTATNELLDYVTQNWEIKT 310

Query: 293 LK-HQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
           L  + Q  +K+++      +  +  +L+   +  +KI+++  S +
Sbjct: 311 LNTNGQIVKKNDIKVADGDRKTISARLESDLTVVQKINSRNDSVK 355


>gi|260587729|ref|ZP_05853642.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Blautia hansenii DSM
           20583]
 gi|260541994|gb|EEX22563.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Blautia hansenii DSM
           20583]
          Length = 301

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 98/213 (46%), Gaps = 13/213 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++I++D  + Q+ G K  E + YPASLTK+MT+ +  E L + +     +  +      Q
Sbjct: 52  AAILLD-EEGQILGRKNSEKKIYPASLTKIMTVLLSIEKLDNIREITVLREEIFPELYAQ 110

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           + S          T    +   +  S  +   A  E   GSEK+F   M+ KAKK+GM+N
Sbjct: 111 DASMAGFLPGEKVTYRDLLYGAMLPSGAECCVALAEGSCGSEKEFVSEMNKKAKKLGMKN 170

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSI---------RKFRYRNR 222
           T + N +GLHD N  TT  D + L     KN  F + +  FS            F + + 
Sbjct: 171 THFTNTTGLHDDNHYTTVEDLSRLLCYAMKNQDFSKIFTAFSYSVPATNKHPEGFTFFST 230

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           +     K   K   I G KTGYT N+G  + T+
Sbjct: 231 LSQELQKAGVKDSCILGGKTGYTSNAGLCLATA 263


>gi|229074074|ref|ZP_04207123.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock4-18]
 gi|229094734|ref|ZP_04225742.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-29]
 gi|228688672|gb|EEL42542.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-29]
 gi|228709037|gb|EEL61161.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock4-18]
          Length = 444

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 116/223 (52%), Gaps = 28/223 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS    K 
Sbjct: 48  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAHKI 107

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A+   SAN  + A GE ++G E  F  +M++KAK++
Sbjct: 108 SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALGEAVAGKEVNFVKMMNDKAKEL 167

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        ARD AIL   L K++P+      I 
Sbjct: 168 GLKNYKFVNSTGLTNKDLKGQHPEGTTPDEENKMSARDVAILAQHLIKDYPKTLDTAKIP 227

Query: 216 K--FRYRNRI---ITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  F+   +    + N N +L  +      +DG+KTG T  +G
Sbjct: 228 KKVFQEGGKYPINMDNWNWMLKGLVKQYDGVDGLKTGSTPEAG 270


>gi|163940275|ref|YP_001645159.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
 gi|163862472|gb|ABY43531.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
          Length = 434

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 115/224 (51%), Gaps = 30/224 (13%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           S+I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S    K 
Sbjct: 40  SAILVEANSGKILYQKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAYKI 99

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A++  SAN  + A  E I+G E  F  +M++K+K+ 
Sbjct: 100 SQDRSLSNVPLENGGSYTVKELYEAMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEF 159

Query: 170 GMQNTIYKNASGL--HD-------------KNQITTARDQAILGILLRKNFPQYYKYFSI 214
            M+N  + N++GL  HD             KN++ +ARD AIL   L ++FP+      I
Sbjct: 160 EMENYKFVNSTGLTNHDLKGHHPEGTTPDEKNKM-SARDCAILAQRLIQDFPKILDTAKI 218

Query: 215 RKFRYRNR-----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
            K  ++        +TN N +L  +      +DG+KTG T  +G
Sbjct: 219 PKKTFQKGGKYPIDMTNFNWMLKGLIKQYEGVDGLKTGTTPEAG 262


>gi|42781623|ref|NP_978870.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           ATCC 10987]
 gi|42737546|gb|AAS41478.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           ATCC 10987]
          Length = 253

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 117/218 (53%), Gaps = 17/218 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S+I+ID +  ++   K +E P   A+L+K+MT YI  E L    + L+  + +S     A
Sbjct: 37  SAILIDAHSGEVVYTKNEETPIQSATLSKLMTEYIALEQLNEGNIQLDEVVKISNEVFQA 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             +P ++  K+KT  T    + AL+    N  + A  E I+G+E  F  LM+ KAK++ +
Sbjct: 97  ETSPIQVTSKDKT--TVRDLLHALLLTGNNRSALALAEHIAGNEDNFTQLMNEKAKRLKL 154

Query: 172 -QNTIYKNASGL-HDKNQI--TTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIIT 225
            Q + + NA+G+ +D N++  TTA + A L   L  +FP       +   +F +++  + 
Sbjct: 155 SQPSPFLNATGMNNDTNKLSTTTAIEVAKLATELVTDFPDVLNVTKLTSYQFSFKDTKVF 214

Query: 226 NHNKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLR 257
           N NK+   LN   K+  +DG++T ++ N  ++ V++ +
Sbjct: 215 NTNKMIYSLNKNIKLQGVDGLQTSFSTNGNYSFVSTAK 252


>gi|229173162|ref|ZP_04300712.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus MM3]
 gi|228610339|gb|EEK67611.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus MM3]
          Length = 442

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 133/271 (49%), Gaps = 41/271 (15%)

Query: 35  LFLSIIMIS--------MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMT 85
           LF SI++ S         A ++ A    S+I+++ N  ++   K  DE    AS+TKMM+
Sbjct: 23  LFCSIVVTSGRATAETVSAIDVEAG---SAILVEANSGKILYEKNADESLAIASMTKMMS 79

Query: 86  LYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
            Y++ E +   K+  + ++ +S    K +  ++ S + L+    +T ++   A+   SAN
Sbjct: 80  EYLVHEAVDKGKIKWDQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYEAMAIYSAN 139

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL---------------HDKN 186
             + A  E I+G E  F  +M++K+K+ GM+N  + N++GL                +KN
Sbjct: 140 GATIALVEEIAGKEVDFVKMMNDKSKEFGMKNYKFVNSTGLTNYDLKGHHPEGTTPDEKN 199

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----IITNHNKLLNKM----HNI 237
           ++ +ARD AIL   L ++FP+      I K  ++N       + N N +L  +      +
Sbjct: 200 KM-SARDCAILAKRLVQDFPKILDTAKIPKKTFQNGGKYPIDMVNFNMMLKGLIKQYEGV 258

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           DG+KTG T  +G     ++      +++VV+
Sbjct: 259 DGLKTGTTPEAGDCFTGTVERNGMRLISVVI 289


>gi|239623520|ref|ZP_04666551.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521551|gb|EEQ61417.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 427

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 121/264 (45%), Gaps = 31/264 (11%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D +  + + G  QD  R  AS TK+MT  +  E       +L+ ++  S  AA+Q
Sbjct: 50  SAVLMDGSSGRILYGKGQDIIRPMASTTKIMTCILALELG-----NLDDKVTASSYAASQ 104

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
               L ++    +  E  + AL+  S ND +    E I GS + FA LM+ KA+++G ++
Sbjct: 105 PKVHLGVRSGEEYRLEDLLYALMLESYNDAAVMIAENIGGSVEDFAALMNQKAEELGCRD 164

Query: 174 TIYKNASGLH----DKNQI-----TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII 224
           T +   +GL     DK+ +     TTA D A +        P+  ++ SI   R +N   
Sbjct: 165 TYFITPNGLDGVKKDKDGVEHIHSTTAADLAAIMRYCVMESPKKEEFLSIT--RTQNHTF 222

Query: 225 T-----------NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM--- 270
           T           NHN  LN M  +   KTG+T  +G++ V ++       V  ++G    
Sbjct: 223 TDSSGRRSYSCFNHNAFLNMMEGVLSGKTGFTGGAGYSYVGAMENDGRTYVIALLGCGWP 282

Query: 271 PTSQERDQKALELITSFLEKKTLK 294
           P    +   A +L T  LE   LK
Sbjct: 283 PHKTYKWADARKLYTYGLEHFQLK 306


>gi|187935697|ref|YP_001886551.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723850|gb|ACD25071.1| putative D-alanyl-D-alanine carboxypeptidase DacB [Clostridium
           botulinum B str. Eklund 17B]
          Length = 289

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 107/208 (51%), Gaps = 14/208 (6%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK++T  I  E     +  L+ ++ +SK AA+   SK+  K       ++    L+ 
Sbjct: 67  ASTTKILTAIIAIE-----QGDLDKKVVISKKAASIRGSKVGYKAGEEIRLKELAFGLMF 121

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND + A  E + GS + FA +M++ A  IG+ ++ +++  GL   +  ++A D AIL
Sbjct: 122 KSGNDAAIAIAETLGGSVEGFAQIMNHYATGIGIIDSHFESPHGLDSNSHYSSAYDLAIL 181

Query: 198 ---GI---LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
              G+   L R+      K  S  K+ +  R   N NK+L  +   +G+KTGYT  +G  
Sbjct: 182 TAKGMEYDLFREIVGS--KQISKEKYDF-TRDYNNINKILWLIPEANGVKTGYTGGAGKC 238

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           +V+S+ +K   I+ VV+  P    + QK
Sbjct: 239 LVSSVNHKGKDIIIVVLNCPDRWAQTQK 266


>gi|322411115|gb|EFY02023.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 393

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 116/252 (46%), Gaps = 35/252 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +PK +SIV+D N + +      D PR PAS++KM TLY++FE L   K+ ++T +  ++T
Sbjct: 42  RPK-ASIVVDANTSDILWQDNIDIPRDPASMSKMFTLYVLFEELAKGKITMDTTVTATET 100

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILM 162
              Q  +K+Y      +     +     I      S+N  +     ++S ++   F   +
Sbjct: 101 --DQAIAKIYEISNNNIVAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRI 158

Query: 163 SNKAKKIGMQNTIYKNASGLHDK---------------NQITTARDQAILGILLRKNFPQ 207
           +  AKK+GM NT + NASG   +                 ITTARD A L     K +P 
Sbjct: 159 NATAKKLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSAANITTARDLAKLLYAFLKKYPH 218

Query: 208 YYKY------FSIRKFRYRNRIITNHNKLLNK---MHNIDGIKTGYTRNSGFNIVTSLRY 258
              +       ++    Y     T +  L N    M  +DG+KTG + ++ FN + + + 
Sbjct: 219 IIDFTNQSVVHTMVGTPYEEEFHTYNYSLPNNQFGMEGVDGLKTGSSPSAAFNAMVTAKR 278

Query: 259 KDDPIVAVVMGM 270
            +  ++ +VMG+
Sbjct: 279 GNTRLITIVMGV 290


>gi|153938979|ref|YP_001390767.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum F str. Langeland]
 gi|152934875|gb|ABS40373.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum F str. Langeland]
 gi|295318839|gb|ADF99216.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum F str. 230613]
          Length = 424

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 109/228 (47%), Gaps = 22/228 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++ IDV   ++   K  + R YPAS TK +T  ++ E         N  IP + TA +Q
Sbjct: 39  TAMTIDVETGEIIYAKNIDKRMYPASTTKYLTALLLAENKGK-----NDNIPYTATAKSQ 93

Query: 114 -------NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
                  N   + + E      E  +  L+  S NDV+   G+ ++G+ K F  +M+ K 
Sbjct: 94  PQYSLNINLHPIDIGET--IKAENVMDGLLLFSGNDVAYMIGDALAGNNKNFENMMNKKI 151

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRN 221
           +++ ++NT +   +GLH+ N  TTA D +++     KN P  Y     K  SI   +   
Sbjct: 152 QELNLKNTHFVTPNGLHNPNHYTTAYDLSVISRAALKN-PWVYQSSNKKESSIVTSKGTK 210

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
             I N NKLL K   + G KTGYT  +G  +VT        I+ VVMG
Sbjct: 211 MTIENSNKLLGKDGCVAG-KTGYTDAAGRCLVTLFNRDGRKILGVVMG 257


>gi|301794006|emb|CBW36404.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
           pneumoniae INV104]
 gi|332204876|gb|EGJ18941.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           GA47901]
          Length = 413

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 129/268 (48%), Gaps = 35/268 (13%)

Query: 33  KILFLSIIMISM--------ASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTK 82
           K +FL+++ +S+        A +     K++ I ++ N  ++  +++D  +P   AS+TK
Sbjct: 2   KKIFLTLLTVSLLGGASTAVAQDFTIAAKHA-IAVEANTGKIL-YEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y+++E L++  + L+T + +S    +       S + ++ + Y T E+ + A +  
Sbjct: 60  LITAYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFIDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G + V +   K   ++ VV+
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVL 266


>gi|228964541|ref|ZP_04125651.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795141|gb|EEM42637.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 362

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 104/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 36  GKAEHEPQKIASITKIMTALLAAESGKMKEM-----VSVSNEAVRVEGSAIYLKPGQKVK 90

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS   F  LM+ KAKKIGM++T + N  GL  D +
Sbjct: 91  LEDLVYGLMLRSGNDAAQVIAESVGGSIDGFVYLMNEKAKKIGMKDTHFSNPHGLDGDGS 150

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 151 HYSSAYDMALLTKYAMGN-ESFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 209

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 210 FTKKAGRTLVTTAS--KDGLDLIVVTLSASSDWDD 242


>gi|331266509|ref|YP_004326139.1| D-alanyl-D-alanine carboxypeptidase,penicillin-binding protein 3
           [Streptococcus oralis Uo5]
 gi|326683181|emb|CBZ00799.1| D-alanyl-D-alanine carboxypeptidase,penicillin-binding protein 3
           [Streptococcus oralis Uo5]
          Length = 413

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 132/269 (49%), Gaps = 34/269 (12%)

Query: 31  MGKIL--FLSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQD--EPRYPASLTK 82
           M KI+  F+++++   AS + A+        +I ++    ++  +++D  +P   AS+TK
Sbjct: 1   MKKIILSFMTLLVFGTASTVSAQEFDVAAKHAIAVEATTGKIL-YEKDANQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L+   + L+T + +S    K       S + ++ + Y T EQ + A +  
Sbjct: 60  LVTVYLVYEALEQGTISLSTPVDISDYPYKLTTNSEASNVPMEARNY-TVEQLLEATMVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------- 183
           SAN  + A  E I+GSEK F   M  K  + G+Q+    N +GL+               
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDKMRAKLLEWGIQDATIVNTTGLNNETLGDNIYPGSKKD 178

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDG 239
           D+N++ +A D AI+   L +++PQ  +        +    I + N +L  M      IDG
Sbjct: 179 DENKL-SAYDVAIVARNLIRDYPQVLEITKKPTSTFAGLEIHSTNYMLEGMPAYRGGIDG 237

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +KTG T  +G + V +   K   I+ VV+
Sbjct: 238 LKTGTTDKAGASFVGTTVEKGMRIITVVL 266


>gi|168180079|ref|ZP_02614743.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum NCTC 2916]
 gi|226948683|ref|YP_002803774.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A2 str. Kyoto]
 gi|182669152|gb|EDT81128.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum NCTC 2916]
 gi|226843155|gb|ACO85821.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A2 str. Kyoto]
          Length = 424

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 109/228 (47%), Gaps = 22/228 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++ IDV   ++   K  + R YPAS TK +T  ++ E         N  IP + TA +Q
Sbjct: 39  TAMTIDVETGEIIYAKNIDKRMYPASTTKYLTALLLAE-----NKGKNDNIPYTATAKSQ 93

Query: 114 -------NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
                  N   + + E      E  +  L+  S NDV+   G+ ++G+ K F  +M+ K 
Sbjct: 94  PQYSLNINLHPIDIGET--IKAENVMDGLLLFSGNDVAYMIGDALAGNNKNFENMMNKKI 151

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRN 221
           +++ ++NT +   +GLH+ N  TTA D +++     KN P  Y     K  SI   +   
Sbjct: 152 QELNLKNTHFVTPNGLHNPNHYTTAYDLSVISRAALKN-PWVYQSSNKKESSIVTSKGTK 210

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
             I N NKLL K   + G KTGYT  +G  +VT        I+ VVMG
Sbjct: 211 MAIENSNKLLGKDGCVAG-KTGYTDAAGRCLVTLFNRDGRKILGVVMG 257


>gi|294794892|ref|ZP_06760027.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella sp. 3_1_44]
 gi|294454254|gb|EFG22628.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella sp. 3_1_44]
          Length = 300

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 106/223 (47%), Gaps = 19/223 (8%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           ++ID +  ++   K  D+  +PAS TKM+TL    E    K   L+    +S  A +   
Sbjct: 63  VLIDADTKEILFAKNPDKWMHPASTTKMVTLLTALEL---KGTQLDELATISSYATSMEE 119

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S L ++     T E  +  ++  S ND +    E +SGS  KFA  M+  A K G +N++
Sbjct: 120 SNLGVRVGDQITLEGVLEGMMVASGNDAAVVVAENVSGSVDKFAKDMTRIAAKAGAKNSV 179

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR------KFRYRNR----IIT 225
           + N  GL  K   +TARD A++       +   Y+ F  +      K  Y+NR    I T
Sbjct: 180 FLNPHGLTQKGHHSTARDLAMIAA-----YGMKYQMFRDKVANDYYKVPYQNRAPETIRT 234

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            ++ + NK    +G+KTG+T  +G  ++ S       ++ V++
Sbjct: 235 TNHFIRNKYPGANGLKTGFTNAAGECLIASATRNGHTMIVVML 277


>gi|228477772|ref|ZP_04062400.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus salivarius
           SK126]
 gi|228250464|gb|EEK09678.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus salivarius
           SK126]
          Length = 417

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 159/342 (46%), Gaps = 49/342 (14%)

Query: 34  ILFLSIIMISMASELHAKPKYS--------SIVIDVNKNQMTGFKQDE--PRYPASLTKM 83
           I+ +++I++ +A+   A+ +          +I I+    ++  +++D   P   AS+TK+
Sbjct: 9   IIMIALILLGLATPALAQEQTDDFNVSAKHAIAIEATTGKVL-YEKDATTPDGVASMTKI 67

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +T Y++++ +   K+  +T++ +S            S + L  + Y T +Q + A +  S
Sbjct: 68  LTAYMVYKAVDQGKITWDTEVDISDYPFNLTVDSEVSNVPLDSRKY-TVKQLLDATLISS 126

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------------D 184
           AN  + A  E ISGSE  F   M+ + K+  + +    NASGL+               D
Sbjct: 127 ANSAAIALAEKISGSESAFVDAMTAQLKEWSITDAKLYNASGLNNKYLGDNRYPGSKPDD 186

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYF--SIRKFRYRNRIITNHNKLLNKMHN----ID 238
           +N + +A D AI+   L K++PQ  +    +   F   N+ +T HN +L    N    +D
Sbjct: 187 ENSM-SALDVAIIADHLIKDYPQVLEITKQTETDFEGDNK-LTTHNYMLEGQDNYREGVD 244

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA--------LELITSFLEK 290
           G+KTG T  +G + V         ++ VVM      E D+ A        L+ +T   E 
Sbjct: 245 GLKTGTTELAGASFVAHSNENGMSLITVVMNADNGGE-DEAARFTATNELLDYVTQNWEI 303

Query: 291 KTLKHQ-QTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
           KTL  + Q  +K+++      +  +  KL+   +  +KI++K
Sbjct: 304 KTLNTKGQIVKKNDIKVADGDRQTISAKLESDLTVIQKINSK 345


>gi|228996680|ref|ZP_04156317.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
 gi|228762999|gb|EEM11909.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
          Length = 361

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 125/249 (50%), Gaps = 13/249 (5%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYL 93
           +  S+I I   ++++    +++I+++ +  + + G  + E +  AS+TK+MT  +  E  
Sbjct: 1   MCASVIPIHTYAQMNDVSAHNAILMEEHSGRVLYGKLEHESQKIASITKIMTALLAAESG 60

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           + K++     +P+S  A     S +YL+       E  +  L+ RS ND + A  E + G
Sbjct: 61  KMKEV-----VPISDKAVRVEGSAIYLQPGKKVPLEDLVYGLMLRSGNDAAQAIAENVGG 115

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRKNFPQYYKYF 212
           S + F  LM+ KAK+IGM++T + N  GL  D    ++A D A+L      N   + K F
Sbjct: 116 SIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGTHYSSAYDMALLTRYAMGN-ETFRKIF 174

Query: 213 SIRKFRYR--NRIITNHNKLLNKMHNI-DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
             + ++ +  +    N +KL+   +    G KTG+T+ +G  +VT+     D +  +V+ 
Sbjct: 175 GTKTYQSKMWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA--SKDGLDLIVVT 232

Query: 270 MPTSQERDQ 278
           +  S + D 
Sbjct: 233 LNASNDWDD 241


>gi|229113688|ref|ZP_04243125.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock1-3]
 gi|228669754|gb|EEL25159.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock1-3]
          Length = 425

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 116/223 (52%), Gaps = 28/223 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS    K 
Sbjct: 29  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAHKI 88

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A+   SAN  + A GE ++G E  F  +M++KAK++
Sbjct: 89  SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALGEAVAGKEVNFVKMMNDKAKEL 148

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        ARD AIL   L K++P+      I 
Sbjct: 149 GLKNYKFVNSTGLTNKDLKGQHPEGTTPDEENKMSARDVAILAQHLIKDYPKTLDTAKIP 208

Query: 216 K--FRYRNRI---ITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  F+   +    + N N +L  +      +DG+KTG T  +G
Sbjct: 209 KKVFQEGGKYPINMDNWNWMLKGLVKQYDGVDGLKTGSTPEAG 251


>gi|260583723|ref|ZP_05851471.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella elegans
           ATCC 700633]
 gi|260158349|gb|EEW93417.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella elegans
           ATCC 700633]
          Length = 473

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 134/275 (48%), Gaps = 52/275 (18%)

Query: 47  ELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E + +P+ S+I++D +  ++  G   D+P  PAS++KMMT Y+ FE ++  KL L+T + 
Sbjct: 64  EENYRPE-STIMVDADTGEIVFGSNIDQPWDPASISKMMTAYMAFEAMKEGKLSLDTVV- 121

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGI-------LALITRSANDVSTAFGEFISG-SEKK 157
              TA  ++ +   + E +      G+       L ++   +++V+T      +G S+ +
Sbjct: 122 ---TATEEDRAISTIGEISNNIIVAGVDYPIEELLYMMFYPSSNVATLMVARATGLSDTE 178

Query: 158 FAILMSNKAKKIGMQNTIYKNASGL---------------HDKNQITTARDQAILGILLR 202
           F   M+ K K+ GM+NT + NASG                +++   TTARD AIL     
Sbjct: 179 FLNKMNAKFKEWGMENTKFNNASGAVASAFRGYYTPEGYNNNRYNQTTARDLAILAYHFL 238

Query: 203 KNFPQYYKYFSIRKFRYRNRIIT------------NHNKLLNKMH----NIDGIKTGYTR 246
           K+FP+      I  F  +N +IT             +N  +  M+     +DG KTG + 
Sbjct: 239 KDFPE------ITNFT-KNPLITVMVGTPYEESFYTYNSSIPGMYQGFPGVDGFKTGSSP 291

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           ++ FN + + + +D   + V++G+   +++D  + 
Sbjct: 292 SAAFNHLLTAKQEDTRFIQVILGVGAWEDKDNSSF 326


>gi|116627039|ref|YP_819658.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein
           [Streptococcus thermophilus LMD-9]
 gi|116100316|gb|ABJ65462.1| D,D-carboxypeptidase PBP3. Serine peptidase. MEROPS family S11
           [Streptococcus thermophilus LMD-9]
 gi|312277502|gb|ADQ62159.1| D,D-carboxypeptidase PBP3 [Streptococcus thermophilus ND03]
          Length = 417

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 158/345 (45%), Gaps = 45/345 (13%)

Query: 34  ILFLSIIMISMASELHAKPKYSS--------IVIDVNKNQMTGFKQDE--PRYPASLTKM 83
           I+ +++I+I +A+   A+ +  S        I I+    ++  +++D   P   AS+TK+
Sbjct: 9   IIMIALILIGLATPALAQDQTDSFNVAAKHAIAIETTTGKVL-YEKDATTPDGVASMTKI 67

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +T Y++++ +   K+  +T++ +S            S + L  + Y T +Q + A +  S
Sbjct: 68  LTAYMVYKAVDQGKITWDTEVGISDYPFNLTVDSEVSNVPLDSRKY-TVKQLLDATLISS 126

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DK 185
           AN  + A  E ISG+E  F   M+ + K+ G+ +    NASGL+              D 
Sbjct: 127 ANSAAIALAEKISGTESTFVDTMTAQLKEWGITDAKLFNASGLNNKYLGDNRYPGSKPDD 186

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-NRIITNHNKLLNKMHN----IDGI 240
               +A D AI+   L K++PQ  +     +  +  +  +T HN +L    N    +DG+
Sbjct: 187 ENTMSALDIAIIADHLIKDYPQVLEITKQTEVDFEGDNKLTTHNYMLEGQENYREGVDGL 246

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA--------LELITSFLEKKT 292
           KTG T  +G + V         ++ VVM      + D+ A        L+ +T   E KT
Sbjct: 247 KTGTTELAGASFVAHSNENGMSLITVVMNAYNGGD-DESARFTATNELLDYVTQNWEIKT 305

Query: 293 LK-HQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
           L  + Q  +K+++      +  +  +L+   +  +KI+++  S +
Sbjct: 306 LNTNGQIVKKNDIKVADGDRKTISARLESDLTVVQKINSRNDSVK 350


>gi|293365274|ref|ZP_06611991.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus oralis ATCC
           35037]
 gi|291316724|gb|EFE57160.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus oralis ATCC
           35037]
          Length = 413

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 132/269 (49%), Gaps = 34/269 (12%)

Query: 31  MGKIL--FLSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQD--EPRYPASLTK 82
           M KI+  F+++++   AS + A+        +I ++    ++  +++D  +P   AS+TK
Sbjct: 1   MKKIILSFMTLLVFGTASTVSAQEFDVAAKHAIAVEATTGKIL-YEKDANQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L+   + L+T + +S    K       S + ++ + Y T EQ + A +  
Sbjct: 60  LVTVYLVYEALEQGTISLSTPVDISDYPYKLTTNSEASNVPMEARNY-TVEQLLEATMVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------- 183
           SAN  + A  E I+GSEK F   M  K  + G+Q+    N +GL+               
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDKMRAKLLEWGIQDATIVNTTGLNNETLGDNIYPGSKKD 178

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDG 239
           D+N++ +A D AI+   L +++PQ  +        +    I + N +L  M      IDG
Sbjct: 179 DENKL-SAYDVAIVARNLIRDYPQVLEITKKPTSTFAGLEIHSTNYMLEGMPAYRGGIDG 237

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +KTG T  +G + V +   K   I+ VV+
Sbjct: 238 LKTGTTDKAGASFVGTTVEKGMRIITVVL 266


>gi|229009524|ref|ZP_04166753.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus mycoides DSM 2048]
 gi|228751735|gb|EEM01532.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus mycoides DSM 2048]
          Length = 418

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 117/223 (52%), Gaps = 28/223 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ VS+ A   
Sbjct: 22  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVNEAIAKGKLKWDQKVKVSEYAYNI 81

Query: 111 -ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
              ++ S + L+    +T ++   A+   SAN  + A  E ++G E  F  +M++K+K++
Sbjct: 82  SQDRSLSNVPLRNGESYTVKELYEAMAIYSANGATIALAEAVAGKEVDFVKMMNDKSKEL 141

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        ARD AIL   L ++FP+      I 
Sbjct: 142 GLKNYKFVNSTGLTNKDLKGHHPEGTTPDEENKMSARDVAILAQRLIQDFPKTLDIAKIS 201

Query: 216 KFRYR----NRI-ITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R    +RI + N N +L  +      +DG+KTG T  +G
Sbjct: 202 KKVFREGTPDRIEMPNWNWMLKGLIKEYEGVDGLKTGSTPEAG 244


>gi|229084363|ref|ZP_04216643.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44]
 gi|228698903|gb|EEL51608.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44]
          Length = 416

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 138/284 (48%), Gaps = 38/284 (13%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           K   ++ D N NQ          +PAS+TK++T  ++ E+++  +     Q   S+ A  
Sbjct: 47  KTGDVLYDKNANQHA--------FPASMTKVLTAILLMEHVKPGE-----QFTFSQPALD 93

Query: 113 QNPSKLYLKEKTYFTTEQ--GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           Q  S   ++ +   T ++   +  L+  SANDVS A GE I GS + FA +M+ KAK++G
Sbjct: 94  QEKSNYQIEFQVGETIDRNTALTILMVLSANDVSYAVGERIGGSIENFAKMMNEKAKQLG 153

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN-- 228
            +++ +   +GLHD N  TTA D A++   ++K +P+  +  + +    R  + T+    
Sbjct: 154 AKDSHFITPNGLHDPNHYTTAYDMAMITRGVQK-YPEILQAMNTK----RTTVTTSRQTV 208

Query: 229 KLLNKMHNID-----GIKTGYTRNSGFNIVTSLRYKD-DPIVAVVMGMPTS---QERDQK 279
            + NK +  +     G KTG+T N   N +  L  KD + I+ VVM        ++  Q 
Sbjct: 209 SIFNKANYFENPYSIGGKTGFT-NEARNTLVLLNEKDGNRIINVVMASQRPEIYEDMRQI 267

Query: 280 ALELITSFLEKKTLKHQQTHRK----DNLSSTSLKKS--LMIKK 317
           A    + F ++  L     H+K    D      L+KS  LM+KK
Sbjct: 268 ADHSFSQFTKQMVLDKNNWHQKASYLDKNIDCELEKSAELMLKK 311


>gi|251781775|ref|YP_002996077.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390404|dbj|BAH80863.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 412

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 116/245 (47%), Gaps = 24/245 (9%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTA 110
           +I ++V+  ++   K+ +   P AS+TK++T Y++++ + + KL   + + +S    +  
Sbjct: 32  AIAVEVDSGKILYEKEADKAVPVASITKLLTTYLVYKEIANGKLEWGSSVTISNYPYELT 91

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
              + S + L  + Y T ++ + ALI  +AN  + A  E I G+E KF   MS + K+ G
Sbjct: 92  TNYSISNVPLDARKY-TVKELLKALIVTNANSPAIALAEKIGGTEPKFVDKMSQQLKEWG 150

Query: 171 MQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
           + +    NA+GL               D   + +ARD AI+   L   FP+  K  S   
Sbjct: 151 ISDAKLVNATGLPNHFLGENKYPKTEDDDENLFSARDLAIIARHLLTEFPEVLKITSKPS 210

Query: 217 FRYRNRIITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
             +  + I ++N +L  M      +DG+  GY+   G + V +       ++ VV+    
Sbjct: 211 ANFAGQTIYSYNYMLKDMPYYRDGVDGLFVGYSEKGGASFVATSVENRMRVITVVLNADQ 270

Query: 273 SQERD 277
           +QE +
Sbjct: 271 AQEDE 275


>gi|317500314|ref|ZP_07958539.1| serine-type D-Ala-D-Ala carboxypeptidase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089679|ref|ZP_08338578.1| hypothetical protein HMPREF1025_02161 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316898255|gb|EFV20301.1| serine-type D-Ala-D-Ala carboxypeptidase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330405047|gb|EGG84585.1| hypothetical protein HMPREF1025_02161 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 426

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 122/246 (49%), Gaps = 26/246 (10%)

Query: 46  SELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           S+L+A+   S++++D    ++  G  +DE    AS TK+MT  +  E       +L+ + 
Sbjct: 58  SDLYAR---SAVLMDAETGRILFGKNKDEQMPMASTTKIMTCILALE-----NGNLSDKA 109

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
            VS  A+ Q   KL + +   F  +  + +L+  S ND + A  E I+G+  KFA +M+ 
Sbjct: 110 EVSSVASAQPKVKLGMTQGQTFYLKDLLYSLMLESHNDSAVAIAECIAGNVDKFADMMNK 169

Query: 165 KAKKIGMQNTIYKNASGL--HDKNQI--TTARDQAILGILLRKNFPQYYKYFSI-RKFRY 219
           KA ++G  +T +   +GL   D+N I  TTA + A +        PQ  K+  I R   Y
Sbjct: 170 KASQLGCNSTYFITPNGLDGQDENGIHHTTAEELARIMRYCIMESPQKEKFLEITRADAY 229

Query: 220 --------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP--IVAVV-M 268
                   ++    NHN  L  M      KTG+T+++G+  V +LR KD    IVA++  
Sbjct: 230 TFTDCKGEKSYSCVNHNTFLKMMDGALSGKTGFTQDAGYCYVGALR-KDGKTLIVALLAC 288

Query: 269 GMPTSQ 274
           G P ++
Sbjct: 289 GWPNNK 294


>gi|322374431|ref|ZP_08048945.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C300]
 gi|321279931|gb|EFX56970.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C300]
          Length = 413

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 108/220 (49%), Gaps = 25/220 (11%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFT 127
           ++P   AS+TK++T+Y+++E L+   + L+T + +S    K       S + ++ + Y T
Sbjct: 49  NQPVEIASITKLVTVYLVYEALEQGTISLSTPVDISDYPYKLTTNSEASNVPMEARNY-T 107

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---- 183
            EQ + A +  SAN  + A  E I+GSEK F   M  K  + G+Q+    N +GL+    
Sbjct: 108 VEQLLEATMVSSANSAAIALAEKIAGSEKDFVDKMRAKLLEWGIQDATIVNTTGLNNETL 167

Query: 184 -----------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
                      D+N++ +A D AI+   L +++PQ  +        +    I + N +L 
Sbjct: 168 GDNIYPGSKKDDENKL-SAYDVAIVARNLIRDYPQVLEITKKPTSTFAGLEIHSTNYMLE 226

Query: 233 KM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            M      IDG+KTG T  +G + V +   K   I+ VV+
Sbjct: 227 GMPAYRGGIDGLKTGTTDKAGASFVGTTVEKGMRIITVVL 266


>gi|150016752|ref|YP_001309006.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903217|gb|ABR34050.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 284

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 104/200 (52%), Gaps = 14/200 (7%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK++T  I  E     + +L+ ++ +SK AA    S +  KE    T  + +  L+ 
Sbjct: 65  ASTTKILTSLIAIE-----QGNLDKKVVISKKAAGIRGSTVGYKENEEITLRELVFGLMF 119

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND + A  E + GS + FA +M++ A+ IG+ ++ +++  GL      ++A D AIL
Sbjct: 120 KSGNDAAIAIAEELGGSIEGFAEIMNHYARGIGILDSHFESPHGLDSSKHYSSAYDLAIL 179

Query: 198 ---GI---LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
              G+   L R+      K  S  K+ +  R   N NK+L ++   +G+KTGYT  +G  
Sbjct: 180 TAKGMDYDLFREVVGS--KQISKEKYNF-TRDYNNINKILWRIPGANGVKTGYTGQAGKC 236

Query: 252 IVTSLRYKDDPIVAVVMGMP 271
           +V+S+      ++ VV+  P
Sbjct: 237 LVSSINNNGKDVIIVVLNCP 256


>gi|153814792|ref|ZP_01967460.1| hypothetical protein RUMTOR_01007 [Ruminococcus torques ATCC 27756]
 gi|145847823|gb|EDK24741.1| hypothetical protein RUMTOR_01007 [Ruminococcus torques ATCC 27756]
          Length = 426

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 122/246 (49%), Gaps = 26/246 (10%)

Query: 46  SELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           S+L+A+   S++++D    ++  G  +DE    AS TK+MT  +  E       +L+ + 
Sbjct: 58  SDLYAR---SAVLMDAETGRILFGKNKDEQMPMASTTKIMTCILALE-----NGNLSDKA 109

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
            VS  A+ Q   KL + +   F  +  + +L+  S ND + A  E I+G+  KFA +M+ 
Sbjct: 110 EVSSVASAQPKVKLGMTQGQTFYLKDLLYSLMLESHNDSAVAIAECIAGNVDKFADMMNK 169

Query: 165 KAKKIGMQNTIYKNASGL--HDKNQI--TTARDQAILGILLRKNFPQYYKYFSI-RKFRY 219
           KA ++G  +T +   +GL   D+N I  TTA + A +        PQ  K+  I R   Y
Sbjct: 170 KASQLGCNSTYFITPNGLDGQDENGIHHTTAEELARIMRYCIMESPQKEKFLEITRADAY 229

Query: 220 --------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP--IVAVV-M 268
                   ++    NHN  L  M      KTG+T+++G+  V +LR KD    IVA++  
Sbjct: 230 TFTDCKGEKSYSCVNHNTFLKMMDGALSGKTGFTQDAGYCYVGALR-KDGKTLIVALLAC 288

Query: 269 GMPTSQ 274
           G P ++
Sbjct: 289 GWPNNK 294


>gi|295090182|emb|CBK76289.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cf.
           saccharolyticum K10]
          Length = 352

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 111/232 (47%), Gaps = 22/232 (9%)

Query: 41  MISMASELHAKPKYS--SIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKK 97
           ++   +E+  +  YS  +I++D++   +   K    R YPASLTK+MT  +  E   ++ 
Sbjct: 79  IVPQMAEIDLENLYSPYAILVDLDSGTVLKEKNSTDRIYPASLTKIMTAILAIE--NTED 136

Query: 98  LHLNTQIP--VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
           L    Q+P  +      QN S    +       +  +  ++  S  +   AF + ISGSE
Sbjct: 137 LEEIVQLPDEIFPPLYAQNASMAGFQPGEEVRLKDLLYGVLIPSGAECCLAFADRISGSE 196

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK----- 210
           ++F  LM++KA+++GM+NT + N++GLHD    +T  D +IL     KN  +Y++     
Sbjct: 197 EEFVSLMNDKAQELGMKNTHFTNSTGLHDPEHYSTVEDISILLQYALKN--EYFRDVFTS 254

Query: 211 -YFSIRKFRYRNRIITNHNKLLNKMHNID-------GIKTGYTRNSGFNIVT 254
             +S           T H+ +   M + +       G KTGYT  +G  + +
Sbjct: 255 SRYSTLPSEQHPEGFTFHSTMFKYMDSTEVTGGEILGGKTGYTEEAGLCLAS 306


>gi|254824823|ref|ZP_05229824.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|293594063|gb|EFG01824.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
          Length = 272

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 118/240 (49%), Gaps = 21/240 (8%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP---------ASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           K  +I +  N   +   +  EP Y          ASLTK+MT +++ E + + +L  + +
Sbjct: 23  KQPNIYLSANAAAVYSVENGEPLYEENADKVMPIASLTKLMTAFLVLEAVDNNELSWDEK 82

Query: 104 IPVSKTAATQNPSKLYL---KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
           + + +     +PS + L    +K  ++      A++T SAND +   G+ + G+   F  
Sbjct: 83  LDLVR---LDDPSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLGDRLDGA--NFPK 137

Query: 161 LMSNKAKKIGMQN-TIYKNASGL--HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
            M+N+AKK+GM + T + +ASGL    K+ ++T +D  +L   L    P+  +  S    
Sbjct: 138 EMNNQAKKLGMSSKTTFVSASGLDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKSSV 197

Query: 218 RY-RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
              +   + + N  L  +  +DG+KTG+T  +G+  + +       ++++V+   T+++R
Sbjct: 198 TTDKGAKLESTNDSLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKR 257


>gi|169343528|ref|ZP_02864527.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens C str. JGS1495]
 gi|169298088|gb|EDS80178.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens C str. JGS1495]
          Length = 423

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 101/209 (48%), Gaps = 22/209 (10%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE  YPAS TK+MT  +  E+        N   P +  A  Q P   Y    ++     G
Sbjct: 60  DEKAYPASTTKVMTSLLFAEHASK-----NDSFPYTADAKAQQP---YTLNNSFGPIPVG 111

Query: 132 --------ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
                   + AL+  SAND +    + ++GS +KF+++M+N+ KK+G++NT +   +GLH
Sbjct: 112 EGMNANDLMKALLMFSANDAAAVIADGVAGSAEKFSVMMNNEVKKLGLKNTHFVTPNGLH 171

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIITNHNKLLNKMHNIDG 239
           + +  +TA D A++     KN P   +  +++        +  ++ N NK L    NI G
Sbjct: 172 NDDHYSTAYDLAVILQNAYKN-PWVSETMALKDSDITVNGKKVLLENRNKELGINGNIGG 230

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            KTG+T  +G  +V+        I+  V+
Sbjct: 231 -KTGFTTPAGRCLVSVYERNGRKIIGAVL 258


>gi|322372917|ref|ZP_08047453.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C150]
 gi|321277959|gb|EFX55028.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C150]
          Length = 448

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 132/275 (48%), Gaps = 38/275 (13%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A+E + +PK S+++ID N   +   +  DE R PAS++K MTLY++FE +   ++  +T 
Sbjct: 38  ATEAY-RPK-STLLIDGNTGDVLWEENADEVRDPASMSKAMTLYLVFEAMSKGEISEDTV 95

Query: 104 IPVSKTAATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-K 156
           I  + T   Q  +++Y      +     +T  + I      S+N  +     +++ ++  
Sbjct: 96  I--TATPTDQAIAEIYEISNNKIVAGVQYTVSELITMTAVPSSNVTTVMLANYLTNNDPD 153

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGL-------------HDKNQI--TTARDQAILGILL 201
           K+   M+ K+K++GM +T + NASG              +D NQ   TTARD AI+    
Sbjct: 154 KWIDKMNEKSKELGMTHTKWYNASGAVAVAFKGYYNPQRYDINQTNQTTARDLAIMTYNF 213

Query: 202 RKNFPQYYKY-----FSIRKFRYRNRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNI 252
            K +P+   Y      +++K          +N  +      +  +DG+KTG +    FN 
Sbjct: 214 IKKYPKILNYTDKPVVTVKKGTPYEETFETYNYSIPGAKYGIKGVDGLKTGSSPEGAFNY 273

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           + +++  D  ++AV+MG  +    DQ   E+  +F
Sbjct: 274 INTIKRGDQRMIAVIMG--SGDWSDQTGEEIRHTF 306


>gi|220927973|ref|YP_002504882.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           cellulolyticum H10]
 gi|219998301|gb|ACL74902.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           cellulolyticum H10]
          Length = 406

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 99/198 (50%), Gaps = 14/198 (7%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           P+ + K+MT  +  E     K  LN ++ +SK AA+     L +  +  +T E  + A++
Sbjct: 57  PSVMCKLMTALVTIE-----KTDLNAKVTISKNAASFKGLNLVVGNQ--YTVEDLLYAVM 109

Query: 137 TRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
               ND + A  E++  G  +KF   M+ KAK++ +++T + N +GL++K+Q T+A+D A
Sbjct: 110 LSQGNDAAVALAEYVGDGDIQKFVRYMNTKAKELSLKDTYFVNPTGLYEKDQYTSAKDIA 169

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRN----RIITNHNKLLNKMHNIDGIKTGYTRNS-GF 250
           +L      N   +   F  R F + N     I+TN N L      +DG K G   N    
Sbjct: 170 VLVKAAISN-NTFNLMFGARGFGWLNGNNSSILTNQNTLFWSYKGVDGGKIGTNTNPQSI 228

Query: 251 NIVTSLRYKDDPIVAVVM 268
           + VT+    +  ++AVV 
Sbjct: 229 SAVTTATLNEKRLIAVVF 246


>gi|307703815|ref|ZP_07640756.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
           oralis ATCC 35037]
 gi|307622650|gb|EFO01646.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
           oralis ATCC 35037]
          Length = 405

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 108/220 (49%), Gaps = 25/220 (11%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFT 127
           ++P   AS+TK++T+Y+++E L+   + L+T + +S    K       S + ++ + Y T
Sbjct: 41  NQPVEIASITKLVTVYLVYEALEQGTISLSTPVDISDYPYKLTTNSEASNVPMEARNY-T 99

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---- 183
            EQ + A +  SAN  + A  E I+GSEK F   M  K  + G+Q+    N +GL+    
Sbjct: 100 VEQLLEATMVSSANSAAIALAEKIAGSEKDFVDKMRAKLLEWGIQDATIVNTTGLNNETL 159

Query: 184 -----------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
                      D+N++ +A D AI+   L +++PQ  +        +    I + N +L 
Sbjct: 160 GDNIYPGSKKDDENKL-SAYDVAIVARNLIRDYPQVLEITKKPTSTFAGLEIHSTNYMLE 218

Query: 233 KM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            M      IDG+KTG T  +G + V +   K   I+ VV+
Sbjct: 219 GMPAYRGGIDGLKTGTTDKAGASFVGTTVEKGMRIITVVL 258


>gi|229136857|ref|ZP_04265486.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BDRD-ST26]
 gi|228646592|gb|EEL02797.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BDRD-ST26]
          Length = 443

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 48  AAILVEANSGKIVYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKV 107

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K++
Sbjct: 108 SQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKEL 167

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 168 GLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 227

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 228 KKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 269


>gi|229027860|ref|ZP_04184018.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH1271]
 gi|228733452|gb|EEL84276.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH1271]
          Length = 443

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 123/249 (49%), Gaps = 27/249 (10%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 48  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVAKGKLKWDQKIKVSEYAYKV 107

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A GE I+G E  F  +M++KAK++
Sbjct: 108 SQDASLSNVALENGGTYTVKELYEAMAIFSANGATIALGEAIAGKEVDFVKMMNDKAKEL 167

Query: 170 GMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSI- 214
           G++N  + N++GL               D+    +A+D A L   L K++P+      I 
Sbjct: 168 GLKNYKFVNSTGLTNKDLKGMHPAGTTPDEENKMSAKDVATLAQHLLKDYPKVLDTAKIP 227

Query: 215 -RKFRYRNRI--ITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            ++FR       + N N +L  +      +DG+KTG T  +G     ++       ++VV
Sbjct: 228 NKEFRPEKEKFQMLNWNWMLKGLSKAYDGVDGLKTGSTPEAGECFTGTVERNGMRFISVV 287

Query: 268 MGMPTSQER 276
           +   + Q R
Sbjct: 288 IKTNSRQAR 296


>gi|118362318|ref|XP_001014386.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila]
 gi|89296153|gb|EAR94141.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila SB210]
          Length = 988

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 121/274 (44%), Gaps = 38/274 (13%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S  + DV KN+ +   K  +PR  ASLTK+MT YII + +Q KK+    QI VS+ AA+ 
Sbjct: 654 SVCIFDVEKNKPILCLKGKKPREVASLTKIMTCYIICQAIQKKKIKQTEQIKVSRAAASM 713

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS--------------------- 152
             +  YL+     +    +  L+  S ND + A  E++                      
Sbjct: 714 IGTSAYLRSGDQLSVWDLLHGLMLPSGNDAAFALAEYMGRILFFEDNDYKEQLQQNPNSF 773

Query: 153 ------GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI-LLRKN- 204
                  + K F   M+  AK + + NT Y N  GL +K+  ++A D   L    L K+ 
Sbjct: 774 ENCKAKDAIKCFLKEMNRVAKDLKLANTKYSNPHGLVNKSNRSSALDICKLSAHCLTKSQ 833

Query: 205 -FPQYYK----YFSIRKFRYRNRIIT--NHNKLLNKMHNI-DGIKTGYTRNSGFNIVTSL 256
            F Q  K       +R  +   RI +  N NK L + + I DG+KTG T  +G  + TS 
Sbjct: 834 LFRQIVKTKQYTCQVRNKQGSIRIASWENTNKCLLRYNTICDGVKTGVTCTAGPCLTTSW 893

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           R KD   +  ++   + + R  ++  +     EK
Sbjct: 894 RVKDRHFIITILKCDSLELRYSESQRVFAWICEK 927


>gi|306825360|ref|ZP_07458700.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304432298|gb|EFM35274.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 411

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 108/220 (49%), Gaps = 25/220 (11%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFT 127
           ++P   AS+TK++T+Y+++E L+   + L+T + +S    K       S + ++ + Y T
Sbjct: 49  NQPVEIASITKLVTVYLVYEALEQGTISLSTPVDISDYPYKLTTNSEASNVPMEARNY-T 107

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---- 183
            EQ + A +  SAN  + A  E I+GSEK F   M  K  + G+Q+    N +GL+    
Sbjct: 108 VEQLLEATMVSSANSAAIALAEKIAGSEKDFVDKMRAKLLEWGIQDATIVNTTGLNNETL 167

Query: 184 -----------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
                      D+N++ +A D AI+   L +++PQ  +        +    I + N +L 
Sbjct: 168 GDNIYPGSKKDDENKL-SAYDVAIVARNLIRDYPQVLEITKKPTSTFAGLEIHSTNYMLE 226

Query: 233 KM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            M      +DG+KTG T  +G + V +   K   I+ VV+
Sbjct: 227 GMPAYRGGVDGLKTGTTDKAGASFVGTTVEKGMRIITVVL 266


>gi|222093783|ref|YP_002527831.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1]
 gi|221237829|gb|ACM10539.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1]
          Length = 435

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 40  AAILVEANSGKIVYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKV 99

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K++
Sbjct: 100 SQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKEL 159

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 160 GLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 219

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 220 KKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 261


>gi|206978355|ref|ZP_03239229.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           H3081.97]
 gi|217957590|ref|YP_002336132.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           AH187]
 gi|206743447|gb|EDZ54880.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           H3081.97]
 gi|217065585|gb|ACJ79835.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           AH187]
 gi|324324003|gb|ADY19263.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 438

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 43  AAILVEANSGKIVYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKV 102

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K++
Sbjct: 103 SQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKEL 162

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 163 GLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 222

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 223 KKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 264


>gi|170760715|ref|YP_001786794.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169407704|gb|ACA56115.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 422

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 109/228 (47%), Gaps = 22/228 (9%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++ IDV   ++   K  D+  YPAS TK +T  ++ E         N  IP + TA +Q
Sbjct: 39  TAMTIDVETGEIIYAKNIDKRMYPASTTKYLTALLLAENKGK-----NDNIPYTATAKSQ 93

Query: 114 -------NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
                  N   + + E      E  +  L+  S NDV+   G+ ++G+ K F  +M+ K 
Sbjct: 94  PQYSLNINLHPIDIGET--IKAENVMDGLLLFSGNDVAYMIGDALAGNNKNFENMMNKKI 151

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRN 221
           +++ ++NT +   +GLH+ N  TTA D +++     KN P  Y     K  SI   +   
Sbjct: 152 QELDLKNTHFVTPNGLHNPNHYTTAYDLSVISRAALKN-PWVYQSSNKKESSIVTSKGTK 210

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
             I N NKLL K   + G KTGYT  +G  +VT        I+ +VMG
Sbjct: 211 MTIENSNKLLGKDGCVAG-KTGYTDAAGRCLVTLFNRDGRKILGIVMG 257


>gi|46909001|ref|YP_015390.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|46882274|gb|AAT05567.1| putative D-alanyl-D-alanine carboxypeptidase [Listeria
           monocytogenes serotype 4b str. F2365]
          Length = 272

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 118/240 (49%), Gaps = 21/240 (8%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP---------ASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           K  +I +  N   +   +  EP Y          ASLTK+MT +++ E + + +L  + +
Sbjct: 23  KQPNIYLSANAAAVYSVENGEPLYEENADKVMPIASLTKLMTAFLVLEAVDNNELSWDEK 82

Query: 104 IPVSKTAATQNPSKLYL---KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
           + + +     +PS + L    +K  ++      A++T SAND +   G+ + G+   F  
Sbjct: 83  LDLVR---LDDPSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLGDRLDGA--NFPK 137

Query: 161 LMSNKAKKIGMQN-TIYKNASGL--HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
            M+N+AKK+GM + T + +ASGL    K+ ++T +D  +L   L    P+  +  S    
Sbjct: 138 EMNNQAKKLGMSSKTTFVSASGLDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKSSV 197

Query: 218 RY-RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
              +   + + N  L  +  +DG+KTG+T  +G+  + +       ++++V+   T+++R
Sbjct: 198 TTDKGAKLESTNDSLGSIQGLDGLKTGFTDEAGYCFIGTAERGGRRVISIVLDAGTAEKR 257


>gi|222152530|ref|YP_002561705.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus uberis 0140J]
 gi|222113341|emb|CAR40940.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus uberis
           0140J]
          Length = 400

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 125/252 (49%), Gaps = 33/252 (13%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---- 110
           +I ++    ++   K+   + P ASLTK++T+Y+  + +++ K+  +T + +S  A    
Sbjct: 35  AIAVECETGKILYQKEANQKAPIASLTKILTVYLTLKEIKNGKISWDTPVKMSDYAKELA 94

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                 NPS LY   K  FT ++ I + +  S+N  + +  E I+GSE +F  +M  + +
Sbjct: 95  NNPDVSNPS-LY---KDTFTVKELIDSSMVVSSNSAAISLAETIAGSEPQFVDMMKKQLQ 150

Query: 168 KIGMQNTIYKNASGL---------------HDKNQITTARDQAILGILLRKNFPQYYKYF 212
             G+Q+    NASGL               +D+NQ+ +A++ AI+   L   FP+     
Sbjct: 151 TWGIQDYQLVNASGLNNSMLNGHLYPKSKPNDENQL-SAKNLAIVASHLISEFPEILAIS 209

Query: 213 SIRKFRYRNRIITNHNKLLNKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           S  +  + N ++ N N LL  +      +DG+KTG T  +G   + +   +D+  V VV+
Sbjct: 210 SQSQLYWGNDVLQNSNHLLPGLSMGRLGVDGLKTGTTGCAGQTYIGT-AVQDNMRVIVVI 268

Query: 269 GMPTSQERDQKA 280
               + E+D +A
Sbjct: 269 LHANNAEQDSEA 280


>gi|229016825|ref|ZP_04173754.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273]
 gi|229023030|ref|ZP_04179546.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272]
 gi|228738278|gb|EEL88758.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272]
 gi|228744477|gb|EEL94550.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273]
          Length = 362

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 104/212 (49%), Gaps = 12/212 (5%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
           + EP+  AS+TK+MT  +  E  + K+L     + VS  A     S +YLK       E 
Sbjct: 39  EHEPQKIASITKIMTALLAAESGKMKEL-----VSVSNEAVRVEGSAIYLKPGQKVKLED 93

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQIT 189
            +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +  +
Sbjct: 94  LVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYS 153

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTGYTR 246
           +A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG+T+
Sbjct: 154 SAYDMALLTKYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTK 212

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
            +G  +VT+     D +  +V+ +  S + D 
Sbjct: 213 KAGRTLVTTAS--KDGLDLIVVTLSASSDWDD 242


>gi|239636745|ref|ZP_04677747.1| penicillin-binding protein 4 [Staphylococcus warneri L37603]
 gi|239598100|gb|EEQ80595.1| penicillin-binding protein 4 [Staphylococcus warneri L37603]
          Length = 429

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 81/149 (54%), Gaps = 22/149 (14%)

Query: 69  FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKE 122
           + +D+  YPAS+TK+MT+Y+  E ++ KKL LN ++ ++       T    + +KLY  +
Sbjct: 65  YNKDKVWYPASMTKLMTMYLTLEAVKDKKLSLNDEVKITDREYQMSTLPELSNTKLYPGQ 124

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
           K  +T    +   ++ S+N  +   GE +SG+   F  LM+ KAK++GM++T Y N +G 
Sbjct: 125 K--WTISDLLQITVSNSSNAAALILGEQVSGNVNDFTDLMNKKAKELGMKDTHYVNPTGA 182

Query: 183 HD--------------KNQITTARDQAIL 197
            +              +N  TTARD AIL
Sbjct: 183 ENARLKSFAPSKYKKTENTTTTARDYAIL 211


>gi|166031716|ref|ZP_02234545.1| hypothetical protein DORFOR_01416 [Dorea formicigenerans ATCC
           27755]
 gi|166028169|gb|EDR46926.1| hypothetical protein DORFOR_01416 [Dorea formicigenerans ATCC
           27755]
          Length = 430

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 113/233 (48%), Gaps = 21/233 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D +  ++   K++E   P AS TK+MT  I  E++   ++     +  S  AA+Q
Sbjct: 56  SAVLMDADSGRVLFGKEEEAIRPMASTTKIMTCIIALEHMTDNEI-----VTASAYAASQ 110

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
               L ++E   F     + +L+  S ND +    E I+GS + F  +M+ KA+++G+  
Sbjct: 111 PKVHLGVREGQQFYLRDILFSLMLESHNDSAVMVAEEIAGSVEAFVKMMNEKAEELGLTK 170

Query: 174 TIYKNASGLHDKNQ----ITTARDQAILGILLRKNFPQYYKYFSI---RKFRYRN----- 221
           T +   +GL  +++     TTA + A +      + P+   +  I   +++ +R+     
Sbjct: 171 THFVTPNGLDGEDEGGVHATTAMELAKIMKYCIMDSPEKEMFLDITGTKEYHFRDLKGTS 230

Query: 222 -RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM--GMP 271
               TNHN  L  M      KTG+T ++G+  V +LR  +   +  ++  G P
Sbjct: 231 SYTCTNHNAFLTMMDGAISGKTGFTADAGYCYVGALRRDERTFIVALLACGWP 283


>gi|42779091|ref|NP_976338.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987]
 gi|42735006|gb|AAS38946.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987]
          Length = 438

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 43  AAILVEANSGKIVYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKV 102

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K++
Sbjct: 103 SQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKEL 162

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 163 GLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 222

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 223 KKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 264


>gi|239825594|ref|YP_002948218.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70]
 gi|239805887|gb|ACS22952.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70]
          Length = 450

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 117/242 (48%), Gaps = 28/242 (11%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ-IP---VSKT 109
           ++I++D N  ++   K  D     AS+TKMMT Y++ E ++ K++  + Q  P   V + 
Sbjct: 40  AAILVDANTGRILYQKNIDTVLGIASMTKMMTEYLLLEAIKEKRVKWDQQYTPSDYVYRL 99

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L++   +T  +   A+   SAN  + A  E + GSE+ F  +M+ KAK++
Sbjct: 100 SQDRSLSNVPLRKDEKYTVRELYEAMAIYSANAATVAIAEIVGGSEQNFVKMMNEKAKQL 159

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G++   + N++GL +++               + +AR  A L   L K +P+  +  S  
Sbjct: 160 GLKGYKFVNSTGLSNEDLKGFHPEGTNEREENVMSARSVATLAYHLLKEYPEVLETASTP 219

Query: 216 KFRYRNRI-----ITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           +  +R        + N N +L  +      +DG+KTGYT  +G+    +        + V
Sbjct: 220 RKIFREGTDDQIKMDNWNWMLPGLVREYEGVDGLKTGYTEFAGYCFTGTAERDGVRFITV 279

Query: 267 VM 268
           VM
Sbjct: 280 VM 281


>gi|297582349|ref|YP_003698129.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           selenitireducens MLS10]
 gi|297140806|gb|ADH97563.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           selenitireducens MLS10]
          Length = 465

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 142/336 (42%), Gaps = 64/336 (19%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQS 95
           ++++ +  +E   +P   ++++   K+    F++  D+P  PAS+TKMM+ Y+I E +  
Sbjct: 17  AVLVPTERAEASYEPTVDTVILVDAKSGRVLFERNIDQPLPPASMTKMMSEYLILEAVND 76

Query: 96  KKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
             +  +T +P+S   A+    ++ S + L+    +  E+   ++   SAN  + A  E I
Sbjct: 77  GDISWDTNVPISDFLASLSHNRSLSNVPLRVDGEYNVEELYESVAIYSANASTMALAELI 136

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNAS---GLHDKNQIT------------------- 189
           SGSE  F   M+ K  ++G+  T+ + A    GL D  +I+                   
Sbjct: 137 SGSEGAFVSEMNEKGVELGL-GTLMREAGGEYGLEDLGEISEEGLGSFQFVNSTGLPNRL 195

Query: 190 -----------------TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNH 227
                            +AR  A L   L  ++P+      I    +R        + N 
Sbjct: 196 LEGNHPEGTGAEEDNYMSARAAATLAYYLVNDYPEVLDVAGIPHKVFREGTGDAIDMPNW 255

Query: 228 NKLLNKMHN-------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER---D 277
           N ++    N       +DG+KTG+T  +GF    +       +V+VVMG  + + R    
Sbjct: 256 NNMIPGTENSHLDYEYVDGLKTGHTNAAGFTFTGTGEKDGQRLVSVVMGADSIEHRFQET 315

Query: 278 QKALEL-ITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           Q+ LE    +F E++   +   +  D   + ++ K 
Sbjct: 316 QRVLEWGFNTFYEEEI--YAAGYSPDGFETIAVSKG 349


>gi|319655038|ref|ZP_08009108.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. 2_A_57_CT2]
 gi|317393262|gb|EFV74030.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. 2_A_57_CT2]
          Length = 451

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 106/217 (48%), Gaps = 26/217 (11%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGIL 133
           AS+TKMMT Y++ E ++  K+  + +  VS    K +  +N S + L+    +   +   
Sbjct: 65  ASMTKMMTEYLLLEAVEEGKVKWDQEYAVSEYVWKVSQDRNLSNVPLRRDGKYNIRELYE 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN------- 186
           A+   SAN  + A  E I+GSE  F  +M+ KA ++G+++  + N+SGL++++       
Sbjct: 125 AMAIYSANGATIAIAETIAGSETNFVKMMNEKAAELGLKDYKFVNSSGLNNRDLKGSPPA 184

Query: 187 ------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM- 234
                  + +A+D A+L   L   FP+  +  S  +  +R        + N N +L ++ 
Sbjct: 185 GGPEEENVMSAKDTAMLAKELINRFPEVLETASTPRKTFREGTDDEIKMENWNWMLPELV 244

Query: 235 ---HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 DG+KTG T  +G+    +     +  ++VVM
Sbjct: 245 YGYEGADGLKTGTTDFAGYCFTGTAMRDGNRYISVVM 281


>gi|307709107|ref|ZP_07645566.1| penicillin-binding protein 3 [Streptococcus mitis SK564]
 gi|307620053|gb|EFN99170.1| penicillin-binding protein 3 [Streptococcus mitis SK564]
          Length = 413

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 119/238 (50%), Gaps = 28/238 (11%)

Query: 56  SIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           +I ++ N  ++  +++D  +P   AS+TK++T+Y+++E L++  + L+T + +S    + 
Sbjct: 32  AIAVEANTGKIL-YEKDATQPVEIASITKLLTVYLVYEALENGSITLSTPVDISDYPYQL 90

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S + ++ + Y T E+ + A +  SAN  + A  E I+GSEK F  +M  K  + 
Sbjct: 91  TTNSEASNVPMEARNY-TVEELLEATLVSSANSAAIALAEKIAGSEKNFVDMMRAKLLEW 149

Query: 170 GMQNTIYKNASGLH---------------DKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           G+++    N +GL+               D+N++ +A D AI+   L K +PQ  +    
Sbjct: 150 GIKDATVVNTTGLNNETLGDNIYPGSNKDDENKL-SAYDVAIVARNLIKKYPQVLEITKK 208

Query: 215 RKFRYRNRIITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
               +    IT+ N +L  M       DG+KTG T  +G + V +   K   ++ VV+
Sbjct: 209 PSSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKGMRVITVVL 266


>gi|167767426|ref|ZP_02439479.1| hypothetical protein CLOSS21_01945 [Clostridium sp. SS2/1]
 gi|167711401|gb|EDS21980.1| hypothetical protein CLOSS21_01945 [Clostridium sp. SS2/1]
 gi|291559258|emb|CBL38058.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
           SSC/2]
          Length = 383

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 143/305 (46%), Gaps = 30/305 (9%)

Query: 35  LFLSIIMISM------ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMT-L 86
           +FL +I+ S+      A E++   K +++++D    ++   K  + + P AS TK++T L
Sbjct: 7   VFLYVIICSIQIYAVSAEEINLNAK-AAVIMDAESGKILYEKSKDQKMPNASTTKILTCL 65

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           YI+      K   L+    VSK AA Q   +L ++E   +  +  +  L+  S ND +  
Sbjct: 66  YIL------KHCDLDQMAEVSKNAAMQPKVRLGVREGEKYKVKDLLYGLMLESYNDCAVV 119

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DK--NQITTARDQAILGILLR 202
             E   GS + F   M+  A+ +G  NT +   +GL   DK     TTA+D A +     
Sbjct: 120 LAEHAEGSVENFEKRMNQMAENLGTLNTHFVTPNGLDGIDKKGRHETTAQDLAKIMARCI 179

Query: 203 KN-----FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
           KN       Q  +Y      R R  I  NHN LL+ M  +   KTGYT  +G+  V +++
Sbjct: 180 KNQQFLEITQTKQYTFTDGSRKRRFICNNHNALLSSMQGVISGKTGYTSKAGYCYVGAVK 239

Query: 258 YKDDPIVAVVM--GMP---TSQERD-QKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
            K+  +   V+  G P   T + +D +K ++  T   E++ +    +  K+      LK+
Sbjct: 240 QKNMTMTFSVLASGWPPHKTYKWKDVRKLVQYATDHYERREIIADTSKIKEISIKNGLKE 299

Query: 312 SLMIK 316
            +++K
Sbjct: 300 KVLLK 304


>gi|160893432|ref|ZP_02074217.1| hypothetical protein CLOL250_00982 [Clostridium sp. L2-50]
 gi|156864827|gb|EDO58258.1| hypothetical protein CLOL250_00982 [Clostridium sp. L2-50]
          Length = 533

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 108/233 (46%), Gaps = 29/233 (12%)

Query: 56  SIVIDVNKN----QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +IV+D N      Q   F +   +YPAS+TK++T  +  E        L   + +S  A 
Sbjct: 100 AIVLDANTGNILYQKNAFDK---QYPASITKLLTFLLAIE-----NTKLTDTVTMSHDAV 151

Query: 112 ---TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG-SEKKFAILMSNKAK 167
               +  S + L E    + E  +  ++  SAN+V+   GEF+SG S + FA +M+ +A 
Sbjct: 152 FGIDRGSSHIGLDEGEQISMEDALYGMMLESANEVAWGIGEFVSGGSIEDFAKMMNERAV 211

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR-------KFRYR 220
           ++G   T + NA+GL D+N  TT  D A++     K+  ++ K    R            
Sbjct: 212 ELGCLGTHFVNANGLPDENHYTTCYDMALITKACLKH-DEFRKITGTRNHVIGPTNICEE 270

Query: 221 NRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            R +  H K+ N          +G KTGYT ++   +VT  +  D  ++ V+M
Sbjct: 271 ERQLWQHCKMTNPDSKYYYEYCEGGKTGYTNDALNTLVTWSKKGDTELICVLM 323


>gi|15674245|ref|NP_268420.1| D-alanyl-D-alanine carboxypeptidase [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12725334|gb|AAK06361.1|AE006455_7 D-alanyl-D-alanine carboxypeptidase [Lactococcus lactis subsp.
           lactis Il1403]
          Length = 435

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 104/223 (46%), Gaps = 38/223 (17%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGIL 133
           AS+TK++T Y++++ +   KL  NT++P+S  A       N S + L +   +T +  + 
Sbjct: 65  ASITKLLTAYLVYKNVAENKLTWNTKVPISDYAYELTQNSNASNIPLAQNGQYTVKDLLN 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN------- 186
           AL+  SAN  + A  E I+GSE KF  +M+ + K  G+ ++   NASGL + +       
Sbjct: 125 ALLLPSANSAAVALAEKIAGSEPKFVDMMTKQMKDWGITDSHLVNASGLPNDDLNGHIYP 184

Query: 187 -------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----IITNHNKLLNKM 234
                     +A+  A L   L ++FP+  +     +  +         +TN N++L+  
Sbjct: 185 GSGASATNTMSAKAVATLSYHLIQDFPEILQITKKTEIPFDTGNEAKMTLTNTNQMLSGF 244

Query: 235 H----NIDGIKT-----------GYTRNSGFNIVTSLRYKDDP 262
                 +DG+KT           G T  +GF I+T +    DP
Sbjct: 245 STSRTGVDGLKTGSTSFQIDCFAGTTNQNGFRIITVVLEATDP 287


>gi|254992369|ref|ZP_05274559.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           J2-064]
          Length = 272

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 118/240 (49%), Gaps = 21/240 (8%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP---------ASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           K  ++ +  N   +   +  EP Y          ASLTK+MT +++ E + + +L  + +
Sbjct: 23  KQPNLYLSANATAVYSVENGEPLYEENADKVMPIASLTKLMTAFLVLEAVDNNELSWDEK 82

Query: 104 IPVSKTAATQNPSKLYL---KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
           + + +     +PS + L    +K  ++      A++T SAND +   G+ + G+   F  
Sbjct: 83  LDLVR---LDDPSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLGDRLDGA--NFPK 137

Query: 161 LMSNKAKKIGMQN-TIYKNASGL--HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
            M+N+AKK+GM + T + +ASGL    K+ ++T +D  +L   L    P+  +  S    
Sbjct: 138 EMNNQAKKLGMSSKTTFVSASGLDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKSSV 197

Query: 218 RY-RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
              +   + + N  L  +  +DG+KTG+T  +G+  + +       ++++V+   T+++R
Sbjct: 198 TTDKGAKLESTNDSLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKR 257


>gi|228963111|ref|ZP_04124282.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228796567|gb|EEM44004.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 443

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 48  AAILVEANSGKIVYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKV 107

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K++
Sbjct: 108 SQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKEL 167

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 168 GLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 227

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 228 KKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 269


>gi|38142345|dbj|BAD00975.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
          Length = 413

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 133/269 (49%), Gaps = 37/269 (13%)

Query: 33  KILFLSIIMISM--------ASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTK 82
           K +FL+++ +S+        A + +   K++ I ++ N  ++  +++D  +P   AS+TK
Sbjct: 2   KKIFLTLLTVSLLGGASTVAAQDFNIAAKHA-IAVEANTGKIL-YEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S    +       S + ++ + Y T E+ + A +  
Sbjct: 60  LLTVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNVPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------- 183
           SAN  + A  E I+GSEK F   M  K  + G+++    N +GL+               
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDRMRAKLLEWGIKDATVVNTTGLNNETLGDNIYPGSNKD 178

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDG 239
           D+N++ +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG
Sbjct: 179 DENKL-SAYDVAIVARNLIKKYPQVLEITKKPSSTFDGITITSTNYMLEGMPAYRGGFDG 237

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +KTG T  +G + V +   K   ++ VV+
Sbjct: 238 LKTGTTDKAGESFVGTTVEKGMRVITVVL 266


>gi|75764308|ref|ZP_00743843.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74488202|gb|EAO51883.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 349

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 98  GKAEHEPQKIASITKIMTALLAAESGKMKEM-----VSVSNEAVRVEGSAIYLKPGQKVK 152

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS   F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 153 LEDLVYGLMLRSGNDAAQVIAESVGGSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGS 212

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 213 HYSSAYDMALLTKYAMGN-ESFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 271

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 272 FTKKAGRTLVTTA--SKDGLDLIVVTLSASSDWDD 304


>gi|288561558|ref|YP_003428964.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudofirmus
           OF4]
 gi|288548190|gb|ADC52072.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudofirmus
           OF4]
          Length = 446

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 136/279 (48%), Gaps = 37/279 (13%)

Query: 34  ILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
           +L ++ ++I+    + A P     S+I++D    ++   K  +E    AS++KMM+ Y++
Sbjct: 15  LLVITNVLITSPVSVSANPNINTNSAILVDATSGKILLQKNINELLKVASMSKMMSEYLV 74

Query: 90  FEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
            E + +  +     +P+S    + +   N S +YL++   +T ++   ++   SAN  + 
Sbjct: 75  LEAINNGAISWEQVVPISDLVREISHNNNLSNVYLRQDETYTVKELYESVAIYSANGATM 134

Query: 146 AFGEFISGSEKKFAILMSNKAK--KIGMQNTIYK--NASGL---------------HDKN 186
           A  E I+GSE+ F  +M++KA   ++G     YK  N++GL                D+N
Sbjct: 135 ALAELIAGSEESFVNMMNDKAMQLELGEYGIDYKFVNSTGLPNQYLLGKHPEGTTEKDEN 194

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM----HNI 237
           ++ T R  A L   L K++P+  +  SI +  ++        + N N +L  +     ++
Sbjct: 195 EL-TVRATAKLAFHLLKDYPEVLETASIERKIFKEGTEDFIQMDNWNWMLPGLVYGYPDV 253

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           DG+KTGYT  +G++   +    +  ++ VV    + +ER
Sbjct: 254 DGLKTGYTAQAGYSFTGTAERDNVRLITVVTKTSSLEER 292


>gi|229058203|ref|ZP_04196591.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
 gi|228720067|gb|EEL71651.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
          Length = 362

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 104/212 (49%), Gaps = 12/212 (5%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
           + EP+  AS+TK+MT  +  E  + K+L     + VS  A     S +YLK       E 
Sbjct: 39  EHEPQKIASITKIMTALLAAESGKMKEL-----VSVSNEAVRVEGSAIYLKPGQKVKLED 93

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQIT 189
            +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +  +
Sbjct: 94  LVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYS 153

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTGYTR 246
           +A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG+T+
Sbjct: 154 SAYDMALLTKYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTK 212

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
            +G  +VT+     D +  +V+ +  S + D 
Sbjct: 213 KAGRTLVTTAS--KDGLDLIVVTLSASSDWDD 242


>gi|168184273|ref|ZP_02618937.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf]
 gi|237794758|ref|YP_002862310.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum Ba4 str. 657]
 gi|182672602|gb|EDT84563.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf]
 gi|229261502|gb|ACQ52535.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum Ba4 str. 657]
          Length = 424

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 109/228 (47%), Gaps = 22/228 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++ IDV   ++   K  + R YPAS TK +T  ++ E         N  IP + TA +Q
Sbjct: 39  TAMTIDVETGEIIYAKNIDKRMYPASTTKYLTALLLAE-----NKGKNDNIPYTATAKSQ 93

Query: 114 -------NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
                  N   + + E      E  +  L+  S NDV+   G+ ++G+ K F  +M+ K 
Sbjct: 94  PQYSLNINLHPIDIGET--IKAENVMDGLLLFSGNDVAYMIGDALAGNNKNFENMMNKKI 151

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRN 221
           +++ ++NT +   +GLH+ N  TTA D +++     KN P  Y     K  SI   +   
Sbjct: 152 QELNLKNTHFVTPNGLHNPNHYTTAYDLSVISRAALKN-PWVYQSSNKKESSIVTSKGTK 210

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
             I N NKLL K   + G KTGYT  +G  +VT        I+ +VMG
Sbjct: 211 MTIENTNKLLGKDGCVAG-KTGYTDAAGRCLVTLFNRDGRKILGIVMG 257


>gi|47093271|ref|ZP_00231042.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria
           monocytogenes str. 4b H7858]
 gi|226225362|ref|YP_002759469.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes
           Clip81459]
 gi|254930914|ref|ZP_05264273.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|47018345|gb|EAL09107.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria
           monocytogenes str. 4b H7858]
 gi|225877824|emb|CAS06539.1| Putative D-alanyl-D-alanine carboxypeptidase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|293582460|gb|EFF94492.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|328468283|gb|EGF39289.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes 1816]
 gi|328469045|gb|EGF39999.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes 220]
          Length = 272

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 108/206 (52%), Gaps = 12/206 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL---KEKTYFTTEQGILA 134
           ASLTK+MT +++ E + + +L  + ++ + +     +PS + L    +K  ++      A
Sbjct: 57  ASLTKLMTAFLVLEAVDNNELSWDEKLDLVR---LDDPSAVSLYAITQKRTWSVRDLYSA 113

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGL--HDKNQITTA 191
           ++T SAND +   G+ + G+   F   M+N+AKK+GM + T + +ASGL    K+ ++T 
Sbjct: 114 MLTMSANDAAETLGDRLDGA--NFPKEMNNQAKKLGMSSKTTFVSASGLDVDGKSAVSTT 171

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           +D  +L   L    P+  +  S       +   + + N  L  +  +DG+KTG+T  +G+
Sbjct: 172 KDLFLLSSKLISTHPEVLETTSKSSVTTDKGAKLESTNDSLGSIQGLDGLKTGFTDEAGY 231

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQER 276
             + +       ++++V+   T+++R
Sbjct: 232 CFIGTAERGGKRVISIVLDAGTAEKR 257


>gi|77414953|ref|ZP_00791048.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
           agalactiae 515]
 gi|77158997|gb|EAO70213.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
           agalactiae 515]
          Length = 369

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 103/201 (51%), Gaps = 25/201 (12%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFT 127
           + P   ASLTK+MT+Y++++ + +  L  NT++ +S    +     + S + L EK  +T
Sbjct: 7   NRPAAIASLTKIMTVYMVYKEIDNGNLKWNTKVNISDYPYQLTRESDASNVPL-EKRRYT 65

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----- 182
            +Q + A +  SAN  + A  E ISG+E KF   M+ + +K G+ ++   NASGL     
Sbjct: 66  VKQLVDAAMISSANSAAIALAEHISGTESKFVDKMTAQLEKWGIHDSHLVNASGLNNSML 125

Query: 183 ----------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
                     +D+N++ +ARD AI+   L   +P   K  S    ++   I+ ++N +L 
Sbjct: 126 GNHIYPKSSQNDENKM-SARDIAIVAYHLVNEYPSILKITSKSVAKFDKDIMHSYNYMLP 184

Query: 233 KM----HNIDGIKTGYTRNSG 249
            M      I G+KTG T  +G
Sbjct: 185 DMPVFRPGITGLKTGTTELAG 205


>gi|323483146|ref|ZP_08088538.1| D-alanyl-D-alanine carboxypeptidase [Clostridium symbiosum
           WAL-14163]
 gi|323403566|gb|EGA95872.1| D-alanyl-D-alanine carboxypeptidase [Clostridium symbiosum
           WAL-14163]
          Length = 512

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 132/283 (46%), Gaps = 49/283 (17%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMASEL--HAKPKY---------SSIVIDVNKNQMT 67
           +G +++++   LM   L LSIIMI     +  +AKP +         + IV+D++   + 
Sbjct: 28  WGKLFMKK---LMS--LLLSIIMILAGPAMTSYAKPDWPADTGIQSEAGIVMDMDSKTVI 82

Query: 68  GFKQD--EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA------ATQNPSKLY 119
            F Q+    + PAS+TK++T  ++ E       +L+  +  S  A         N + L 
Sbjct: 83  -FGQNIHVQKAPASITKLLTALVVIE-----NANLDDMVTFSDDAIHNVEEGAGNKNALE 136

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
             +K   T +  +  ++  S+N  + A  E ++GS   F  +M+ K K++G +N+ + N 
Sbjct: 137 PGDK--MTVKDCLYHMLLTSSNQSANALAEHVAGSRDAFVAMMNEKVKELGCENSHFANP 194

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN--- 236
           SGL+D  Q+TT  D A++G    +N P   +  S + +R       N + +  KM +   
Sbjct: 195 SGLNDDTQLTTVYDMALIGTAAYEN-PVLLEIGSAKSYRLP-PTANNPDGVTIKMEHKML 252

Query: 237 -----------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                      I G KTG+T  +G  +VT     D  ++AV M
Sbjct: 253 TEGDPNYYQAAIAG-KTGFTSIAGQTLVTYASKDDRKLIAVTM 294


>gi|228905810|ref|ZP_04069709.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis IBL 200]
 gi|228853818|gb|EEM98576.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis IBL 200]
          Length = 424

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 29  AAILVEANSGKIVYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKV 88

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K++
Sbjct: 89  SQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKEL 148

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 149 GLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 208

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 209 KKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 250


>gi|229010872|ref|ZP_04168069.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
 gi|229132375|ref|ZP_04261229.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
 gi|228651081|gb|EEL07062.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
 gi|228750546|gb|EEM00375.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
          Length = 362

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 104/212 (49%), Gaps = 12/212 (5%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
           + EP+  AS+TK+MT  +  E  + K+L     + VS  A     S +YLK       E 
Sbjct: 39  EHEPQKIASITKIMTALLAAESGKMKEL-----VSVSNEAVRVEGSAIYLKPGQKVKLED 93

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQIT 189
            +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +  +
Sbjct: 94  LVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYS 153

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTGYTR 246
           +A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG+T+
Sbjct: 154 SAYDMALLTKYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTK 212

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
            +G  +VT+     D +  +V+ +  S + D 
Sbjct: 213 KAGRTLVTTAS--KDGLDLIVVTLSASSDWDD 242


>gi|167745400|ref|ZP_02417527.1| hypothetical protein ANACAC_00091 [Anaerostipes caccae DSM 14662]
 gi|167655121|gb|EDR99250.1| hypothetical protein ANACAC_00091 [Anaerostipes caccae DSM 14662]
          Length = 302

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 37/218 (16%)

Query: 76  YPASLTKMMTLYIIFEYL--QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           YPASLTK+MT+ +  E +    K++ +N  I  S   +  + +     E+     +    
Sbjct: 76  YPASLTKIMTVLLAVESVSNDEKEILMNQDIFQSLAQSHASVAGFLPGERV--KIKDLYY 133

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
             +  S  +       +++GSE+KFA+LM+ KA++IGM++T + N++GLHD   ++TA D
Sbjct: 134 GAMLPSGAECCLRLANYLAGSEEKFALLMNQKAREIGMKHTNFVNSTGLHDPKHVSTAED 193

Query: 194 QAILGILLR---KNFPQYYKYFSIRKFR-------------------YRNRIITNHNKLL 231
              L ILLR   KN P++ K F   ++R                   Y++++   +   L
Sbjct: 194 ---LEILLRYALKN-PRFRKVFETMQYRTEPTQKHPEGLLLQSTLTDYKDQLKPTNGSFL 249

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
                  G KTGYT+ +G  + + +  +    + V  G
Sbjct: 250 -------GGKTGYTKEAGLCLASWVNIRGKRYILVTAG 280


>gi|77409053|ref|ZP_00785771.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
           agalactiae COH1]
 gi|77172347|gb|EAO75498.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
           agalactiae COH1]
          Length = 395

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 119/230 (51%), Gaps = 29/230 (12%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           A   +A  K++ + +D++  ++  +++D  +P   ASLTK+MT+Y++++ + +  L  NT
Sbjct: 6   AESFNASAKHA-LAVDLDSGKIL-YEKDANKPAAIASLTKIMTVYMVYKEIDNGNLKWNT 63

Query: 103 QIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
           ++ +S    +     + S + L EK  +T +Q + A +  SAN  + A  E ISG+E KF
Sbjct: 64  KVNISDYPYQLTRESDASNVPL-EKRRYTVKQLVDAAMISSANSAAIALAEHISGTESKF 122

Query: 159 AILMSNKAKKIGMQNTIYKNASGL---------------HDKNQITTARDQAILGILLRK 203
              M+ + +K G+ ++   NASGL               +D+N++ +ARD AI    L  
Sbjct: 123 VDKMTAQLEKWGIHDSHLVNASGLNNSMLGNHIYPKSSQNDENKM-SARDIAIAAYHLVN 181

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTGYTRNSG 249
            +P   K  S    ++   I+ ++N +L  M      I G+KTG T  +G
Sbjct: 182 EYPSILKITSKSVAKFDKDIMHSYNYMLPDMPVFRPGITGLKTGTTELAG 231


>gi|171914424|ref|ZP_02929894.1| D-alanyl-D-alanine carboxypeptidase [Verrucomicrobium spinosum DSM
           4136]
          Length = 353

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 123/259 (47%), Gaps = 19/259 (7%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           Y S Y   N      +LF S   +  A  + A+   S I+++ +   +   +  D  R  
Sbjct: 85  YPSPYGAPNYGAPQTMLFSSGSNVGSAPPIRAE---SFILVNADTGAVIAARNADTQRGA 141

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS  K++T  I+ E       +L+ ++ ++ +     PSKL ++    +T    ++A + 
Sbjct: 142 ASTQKILTALIVAE-----AGNLDQRVRIAPSDVVVEPSKLGVRPGEVYTRRDLLIAFLV 196

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S+NDV+       +GS + FA  M+ +A+ +G  N+ + N  GL    Q +TARD + +
Sbjct: 197 KSSNDVANVLARDNAGSVEAFARKMNARARSLGAVNSYFTNPHGLTGGGQHSTARDLSRI 256

Query: 198 GI------LLRKNFPQYYKYFSIRKFRYRNRI-ITNHNKLLNKMHNIDGIKTGYTRNSGF 250
                   ++R    + Y  F+    R   R+ + N N++L +M   +G+KTGYT  +G 
Sbjct: 257 AWAAYNNPVVRDAVRRRYYTFTFNNGR---RVTLENTNEILGRMAECNGMKTGYTVAAGR 313

Query: 251 NIVTSLRYKDDPIVAVVMG 269
            ++++       ++ V +G
Sbjct: 314 CLISTAHSGRKDVILVQLG 332


>gi|163939383|ref|YP_001644267.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
 gi|163861580|gb|ABY42639.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
          Length = 374

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 104/212 (49%), Gaps = 12/212 (5%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
           + EP+  AS+TK+MT  +  E  + K+L     + VS  A     S +YLK       E 
Sbjct: 51  EHEPQKIASITKIMTALLAAESGKMKEL-----VSVSNEAVRVEGSAIYLKPGQKVKLED 105

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQIT 189
            +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +  +
Sbjct: 106 LVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYS 165

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTGYTR 246
           +A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG+T+
Sbjct: 166 SAYDMALLTKYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTK 224

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
            +G  +VT+     D +  +V+ +  S + D 
Sbjct: 225 KAGRTLVTTA--SKDGLDLIVVTLSASSDWDD 254


>gi|323691411|ref|ZP_08105685.1| hypothetical protein HMPREF9475_00547 [Clostridium symbiosum
           WAL-14673]
 gi|323504554|gb|EGB20342.1| hypothetical protein HMPREF9475_00547 [Clostridium symbiosum
           WAL-14673]
          Length = 513

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 132/283 (46%), Gaps = 49/283 (17%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMASEL--HAKPKY---------SSIVIDVNKNQMT 67
           +G +++++   LM   L LSIIMI     +  +AKP +         + IV+D++   + 
Sbjct: 28  WGKLFMKK---LMS--LLLSIIMILAGPAMTSYAKPDWPADTGIQSEAGIVMDMDSKTVI 82

Query: 68  GFKQD--EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA------ATQNPSKLY 119
            F Q+    + PAS+TK++T  ++ E       +L+  +  S  A         N + L 
Sbjct: 83  -FGQNIHVQKAPASITKLLTALVVIE-----NANLDDMVTFSDDAIHNVEEGAGNKNALE 136

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
             +K   T +  +  ++  S+N  + A  E ++GS   F  +M+ K K++G +N+ + N 
Sbjct: 137 PGDK--MTVKDCLYHMLLTSSNQSANALAEHVAGSRDAFVAMMNEKVKELGCENSHFANP 194

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN--- 236
           SGL+D  Q+TT  D A++G    +N P   +  S + +R       N + +  KM +   
Sbjct: 195 SGLNDDTQLTTVYDMALIGTAAYEN-PVLLEIGSAKSYRLP-PTANNPDGVTIKMEHKML 252

Query: 237 -----------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                      I G KTG+T  +G  +VT     D  ++AV M
Sbjct: 253 TEGDPNYYQAAIAG-KTGFTSIAGQTLVTYASKDDRKLIAVTM 294


>gi|317473054|ref|ZP_07932354.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
 gi|316899483|gb|EFV21497.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
          Length = 302

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 37/218 (16%)

Query: 76  YPASLTKMMTLYIIFEYL--QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           YPASLTK+MT+ +  E +    K++ +N  I  S   +  + +     E+     +    
Sbjct: 76  YPASLTKIMTVLLAVESVSNDEKEILMNQDIFQSLAQSHASVAGFLPGERV--KIKDLYY 133

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
             +  S  +       +++GSE+KFA+LM+ KA++IGM++T + N++GLHD   ++TA D
Sbjct: 134 GAMLPSGAECCLRLANYLAGSEEKFALLMNQKAREIGMKHTNFVNSTGLHDPKHVSTAED 193

Query: 194 QAILGILLR---KNFPQYYKYFSIRKFR-------------------YRNRIITNHNKLL 231
              L ILLR   KN P++ K F   ++R                   Y++++   +   L
Sbjct: 194 ---LEILLRYALKN-PRFRKVFETMQYRTEPTQKHPEGLLLQSTLTDYKDQLKPTNGSFL 249

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
                  G KTGYT+ +G  + + +  +    + V  G
Sbjct: 250 -------GGKTGYTKEAGLCLASWVNIRGKRYILVTAG 280


>gi|222152529|ref|YP_002561704.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus uberis 0140J]
 gi|222113340|emb|CAR40938.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus uberis
           0140J]
          Length = 393

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 118/260 (45%), Gaps = 37/260 (14%)

Query: 51  KPKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           KPK SSIVID  N + +     +E R PAS++K+ TLY++FE L   KL L T I  + T
Sbjct: 47  KPK-SSIVIDAKNGDILWEDNINEHRDPASMSKLFTLYLLFEDLSKGKLSLETTI--TAT 103

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILM 162
              Q  S +Y      +     +  +  I      S+N  +     ++S ++   F   +
Sbjct: 104 DRDQAISGIYEISNNKIISGVEYPIKDLIFMTAVPSSNAATVMIANYLSNNDASAFIDRI 163

Query: 163 SNKAKKIGMQNTIYKNASG----------------LHDKNQITTARDQAILGILLRKNFP 206
           + KA+++GM +T + NASG                L   NQ T+A D AIL     K +P
Sbjct: 164 NQKARELGMHDTFFSNASGAAAEAFKGLYNPDKYDLSAPNQ-TSAHDLAILTYHFLKEYP 222

Query: 207 QYYKYFSIRKFR------YRNRIITNHNKLLNK---MHNIDGIKTGYTRNSGFNIVTSLR 257
           +   Y + R  +      Y     T +  L      M  +DG+KTG + +  FN + + +
Sbjct: 223 EIVTYTNQRIVKTMVGTPYEEEFTTYNYSLPGDRYGMTGVDGLKTGSSPSGAFNAIVTTK 282

Query: 258 YKDDPIVAVVMGMPTSQERD 277
                ++ +VMG+    ++D
Sbjct: 283 RNQKRLITIVMGVGDWSDQD 302


>gi|300117503|ref|ZP_07055293.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus SJ1]
 gi|298725338|gb|EFI65990.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus SJ1]
          Length = 374

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 48  GKAEHEPQKIASITKIMTALLAAESGKMKEM-----VSVSNEAVRVEGSAIYLKPGQKVK 102

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 103 LEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGS 162

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 163 HYSSAYDMALLTRYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 221

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 222 FTKKAGRTLVTTA--SKDELDLIVVTLSASSDWDD 254


>gi|229131021|ref|ZP_04259937.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BDRD-ST196]
 gi|228652433|gb|EEL08354.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BDRD-ST196]
          Length = 418

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 116/223 (52%), Gaps = 28/223 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ VS+ A   
Sbjct: 22  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVNEAIAKGKLKWDQKVKVSEYAYNI 81

Query: 111 -ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
              ++ S + L+    +T ++   A+   SAN  + A  E ++G E  F  +M++K+K+ 
Sbjct: 82  SQDRSLSNVPLRNGESYTVKELYEAMAIYSANGATIALAEAVAGKEVDFVKMMNDKSKEF 141

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        ARD AIL   L ++FP+      I 
Sbjct: 142 GLKNYKFVNSTGLTNKDLKGHHPEGTTPDEENKMSARDVAILAQRLIQDFPKTLDIAKIS 201

Query: 216 KFRYR----NRI-ITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R    +RI + N N +L  +      +DG+KTG T  +G
Sbjct: 202 KKVFREGTPDRIEMPNWNWMLKGLIKEYEGVDGLKTGSTPEAG 244


>gi|255524149|ref|ZP_05391109.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           carboxidivorans P7]
 gi|255512134|gb|EET88414.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           carboxidivorans P7]
          Length = 358

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 118/240 (49%), Gaps = 12/240 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK+MT  +  +Y       L  +I VS  AA    S +  K+    + ++ +  L+ 
Sbjct: 53  ASTTKIMTTLVAIKYGD-----LERKIEVSGKAAGIRGSTVGFKKGEKISLKELLYGLML 107

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           RS ND + A  E +SGS ++F  LM+  A +IG+ NT + +  GL  ++  TTA D A++
Sbjct: 108 RSGNDAAIAIAEGVSGSVEEFVQLMNEYASEIGVLNTHFHSPHGLDYEDHYTTAYDLALI 167

Query: 198 GILLR--KNFPQYYKYFSIRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
               +  K F        +    Y   R   N NK+L ++   +G+KTGYT  +G  +VT
Sbjct: 168 TAKAKEIKLFNDIVSSKDVDGKTYNFTRSYHNINKILWQLPEANGVKTGYTGKAGKCLVT 227

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLM 314
           S + + + ++ VV+     +ER  K  + I  ++ K     +   + +N  S +L K ++
Sbjct: 228 SSKVQGNDVIVVVL---NCRER-WKETKKIYDYVNKNYQFKRIFSKGENAGSINLHKDVL 283


>gi|300214001|gb|ADJ78417.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           salivarius CECT 5713]
          Length = 385

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 119/255 (46%), Gaps = 28/255 (10%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI- 104
           +L AK   S+I +D    Q+   K D+  YP AS++K++T YI+ + +   ++   T++ 
Sbjct: 5   DLEAK---SAIAVDAKTGQIIYAKDDKQTYPVASMSKLLTAYILLQAIHKGEVTWETKVT 61

Query: 105 PVSKTAATQNPSKLY---LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
           P +      N ++L    L+E   +T  Q   A++  SAN  +   G  ISG++ KF   
Sbjct: 62  PTATEVDISNNTELTNVPLQEGHSYTIRQLYQAMLVGSANAATMLIGNAISGTQTKFIDK 121

Query: 162 MSNKAKKIGMQNTIYKNASGL------------HDKNQIT--TARDQAILGILLRKNFPQ 207
           M   AK +G+ +    +A+GL             D+N     + RD AI+   L + +P+
Sbjct: 122 MRETAKSLGITDAKIYSANGLTAKYLGDEIYPNTDENAENEFSVRDMAIISQKLIEEYPE 181

Query: 208 YYKYFSIRKFRYRNR----IITNHNKLLNKMHN--IDGIKTGYTRNSGFNIVTSLRYKDD 261
             +   + K  + +      + N N+LL    N  +DG+KTG +  +G+   ++      
Sbjct: 182 ILETTKLTKIDFNDNGEITTVNNTNELLQDDSNLEVDGLKTGTSDAAGYCFASTTNKDGH 241

Query: 262 PIVAVVMGMPTSQER 276
            I+ V+ G   +  R
Sbjct: 242 RIITVIAGAKDNDAR 256


>gi|218895150|ref|YP_002443561.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           G9842]
 gi|218543092|gb|ACK95486.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           G9842]
          Length = 438

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 43  AAILVEANSGKIVYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKV 102

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K++
Sbjct: 103 SQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKEL 162

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 163 GLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 222

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 223 KKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 264


>gi|317500403|ref|ZP_07958627.1| serine-type D-Ala-D-Ala carboxypeptidase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316898158|gb|EFV20205.1| serine-type D-Ala-D-Ala carboxypeptidase [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 298

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 101/221 (45%), Gaps = 26/221 (11%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN--PSKLYLKEKTY 125
           G+K  +  YPAS TK+MT Y+  +Y      +L+  + +S T+   N   S   L     
Sbjct: 65  GYKLFDKLYPASTTKVMTAYLALKYG-----NLDDVVTMSATSTNFNWDESTCGLSAGDS 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            T    I  L+ +S ND + A  E ISGS++ FA LM+ +AK++G   T + N  GLHD+
Sbjct: 120 LTLYDLICGLLLQSGNDCAAAIAEHISGSQEAFAELMNTEAKQLGATGTHFVNPHGLHDE 179

Query: 186 NQITTA-----------RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
           N  TT            +DQA L I+   ++    K  S     Y       +     + 
Sbjct: 180 NHYTTTYDLYLMFNEALKDQAFLDIISMNSYTA--KVTSADGTSYTPTWQATNYYSAGEA 237

Query: 235 HNIDGI-----KTGYTRNSGFNIVTSLR-YKDDPIVAVVMG 269
              DGI     KTG T  +G  ++   +    +P ++V+MG
Sbjct: 238 TPPDGIHVYGGKTGTTDQAGNCVILYEKNTAGEPYISVIMG 278


>gi|306829382|ref|ZP_07462572.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus mitis ATCC
           6249]
 gi|304428468|gb|EFM31558.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus mitis ATCC
           6249]
          Length = 413

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 23/218 (10%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEKTYFTT 128
           +P   AS+TK++T+Y+++E L+   + L+T + +S            S + ++ + Y T 
Sbjct: 50  QPVEIASITKLVTVYLVYEALEQGTISLSTPVDISDYPYHLTTNSEASNVPMEARNY-TV 108

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----- 183
           EQ + A +  SAN  + A  E I+GSEK F   M  K  + G+Q+    N +GL+     
Sbjct: 109 EQLLEATMVSSANSAAIALAEKIAGSEKDFVDKMRAKLLEWGIQDATIVNTTGLNNETLG 168

Query: 184 ---------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
                    D+    +A D AI+   L +++PQ  +        +    I + N +L  M
Sbjct: 169 DNIYPGSKKDEENKLSAYDVAIVARNLIRDYPQVLEITKKASSTFAGLEIHSTNSMLEGM 228

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 IDG+KTG T  +G + V +   K   I+ VV+
Sbjct: 229 PAYRGGIDGLKTGTTDKAGASFVGTTVEKGMRIITVVL 266


>gi|42780668|ref|NP_977915.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           ATCC 10987]
 gi|42736588|gb|AAS40523.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           ATCC 10987]
          Length = 374

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 48  GKAEHEPQKIASITKIMTALLAAESGKMKEM-----VSVSNEAVRVEGSAIYLKPGQKVK 102

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 103 LEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGS 162

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 163 HYSSAYDMALLTRYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 221

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 222 FTKKAGRTLVTTA--SKDGLDLIVVTLSASSDWDD 254


>gi|332313242|gb|EGJ26337.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str.
           Scott A]
          Length = 244

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 108/206 (52%), Gaps = 12/206 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL---KEKTYFTTEQGILA 134
           ASLTK+MT +++ E + + +L  + ++ + +     +PS + L    +K  ++      A
Sbjct: 29  ASLTKLMTAFLVLEAVDNNELSWDEKLDLVR---LDDPSAVSLYAITQKRTWSVRDLYSA 85

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGL--HDKNQITTA 191
           ++T SAND +   G+ + G+   F   M+N+AKK+GM + T + +ASGL    K+ ++T 
Sbjct: 86  MLTMSANDAAETLGDRLDGA--NFPKEMNNQAKKLGMSSKTTFVSASGLDVDGKSAVSTT 143

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           +D  +L   L    P+  +  S       +   + + N  L  +  +DG+KTG+T  +G+
Sbjct: 144 KDLFLLSSKLISTHPEVLETTSKSSVTTDKGAKLESTNDSLGSIQGLDGLKTGFTDEAGY 203

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQER 276
             + +       ++++V+   T+++R
Sbjct: 204 CFIGTAERGGKRVISIVLDAGTAEKR 229


>gi|257452169|ref|ZP_05617468.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 3_1_5R]
          Length = 383

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 111/216 (51%), Gaps = 11/216 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MTL + F+ +++ + H + ++ ++K    +  S + +K    FT    I A   
Sbjct: 162 ASVTKVMTLLVTFDAIRNGEAHFDDKVVITKDVYNKGGSGISMKPGETFTLLDLIRATAI 221

Query: 138 RSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTI-YKNASGL-----HDKNQITT 190
            SAN+ + A  + I  GS   F   M+ KA+++G+   I Y + +GL      +   I T
Sbjct: 222 YSANNAAYAVAKHIGKGSIPNFIKKMNKKAREVGVSKEISYYSPAGLPTRYTKEPMDIGT 281

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRN-RI-ITNHNKLLNKMHNIDGIKTGYTRNS 248
           AR    L +   K +P+Y +   I++ +  N RI I N N L+ +   I GIKTGY + +
Sbjct: 282 ARGIYKLSLEAIK-YPEYMEIAGIKQMKIHNGRISIRNRNHLIGE-EGIYGIKTGYHKEA 339

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +NI  + +      + V++G  + ++RD   L L+
Sbjct: 340 KYNITVASKDGQREFIVVILGGNSYKDRDNAVLHLL 375


>gi|30020579|ref|NP_832210.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
 gi|29896130|gb|AAP09411.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
          Length = 437

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 121/243 (49%), Gaps = 30/243 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S    K 
Sbjct: 43  SAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKI 102

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ 
Sbjct: 103 SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEF 162

Query: 170 GMQNTIYKNASG---------------LHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           GM++  + N++G               L +KN++ +ARD AIL   L ++FPQ      I
Sbjct: 163 GMKDYKFVNSTGLTNQDLKGYHLEGTTLEEKNKM-SARDCAILAQRLIQDFPQILNTAKI 221

Query: 215 RKFRYRNR-----IITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            K  ++        + N N +L  +      +DG+KTG T  +G     ++      +++
Sbjct: 222 PKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLIS 281

Query: 266 VVM 268
           VV+
Sbjct: 282 VVI 284


>gi|228898767|ref|ZP_04063051.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis IBL 4222]
 gi|228860859|gb|EEN05235.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis IBL 4222]
          Length = 415

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 20  AAILVEANSGKIVYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKV 79

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K++
Sbjct: 80  SQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKEL 139

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 140 GLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 199

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 200 KKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 241


>gi|218513748|ref|ZP_03510588.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli 8C-3]
          Length = 136

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 78/130 (60%), Gaps = 1/130 (0%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKL 98
           + +++++ L A    +S+++D    ++   +  D   +PASLTKMMTLY+ FE L+  K+
Sbjct: 7   VTLAVSAPLAALAGSASLILDARTGKVLAAENADTLNHPASLTKMMTLYLTFEALKRGKI 66

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
             +T I +SK AA + P+KL +K     T  + +  +I +SAND + A  E + GSE  F
Sbjct: 67  DWDTPIRMSKYAAARPPTKLGVKAGGTITVREAVYGMIVKSANDAAAAMAETLGGSESGF 126

Query: 159 AILMSNKAKK 168
           A +M+ KA++
Sbjct: 127 ARMMTAKARQ 136


>gi|229053860|ref|ZP_04195297.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH603]
 gi|228721470|gb|EEL72987.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH603]
          Length = 418

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 116/223 (52%), Gaps = 28/223 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ VS+ A   
Sbjct: 22  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVNEAIAKGKLKWDQKVKVSEYAYNI 81

Query: 111 -ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
              ++ S + L+    +T ++   A+   SAN  + A  E ++G E  F  +M++K+K+ 
Sbjct: 82  SQDRSLSNVPLRNGESYTVKELYEAMAIYSANGATIALAEAVAGKEVDFVKMMNDKSKEF 141

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        ARD AIL   L ++FP+      I 
Sbjct: 142 GLKNYKFVNSTGLTNKDLKGHHPEGTTPDEENKMSARDVAILAQRLIQDFPKTLDIAKIS 201

Query: 216 KFRYR----NRI-ITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R    +RI + N N +L  +      +DG+KTG T  +G
Sbjct: 202 KKVFREGTPDRIEMPNWNWMLKGLIKEYEGVDGLKTGSTPEAG 244


>gi|170755178|ref|YP_001781058.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum B1 str. Okra]
 gi|169120390|gb|ACA44226.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum B1 str. Okra]
          Length = 424

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 20/227 (8%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++ IDV   ++   K  D+  YPAS TK +T  ++ E  + K    N  IP + TA +Q
Sbjct: 39  TAMTIDVETGEIIYAKNIDKRMYPASTTKYLTALLLAEN-KGK----NDNIPYTATAKSQ 93

Query: 114 -------NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
                  N   + + E      E  +  L+  S NDV+   G+ ++G+ K F  +M+ K 
Sbjct: 94  PQYSLNINLHPIDIGET--IKAENVMDGLLLFSGNDVAYMIGDALAGNNKNFENMMNKKI 151

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY----KYFSIRKFRYRNR 222
           +++ ++NT +   +GLH+ N  TTA D +++     KN   Y     K  SI   +    
Sbjct: 152 QELNLKNTHFVTPNGLHNPNHYTTAYDLSVISRAALKNTWVYQSSNKKESSIVTSKGTKM 211

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            I N NKLL K   + G KTGYT  +G  +VT        I+ VVMG
Sbjct: 212 TIENSNKLLGKDGCVAG-KTGYTDAAGRCLVTLFNRDGRKILGVVMG 257


>gi|228912752|ref|ZP_04076401.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228846879|gb|EEM91882.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 443

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 48  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKV 107

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K++
Sbjct: 108 SQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKEL 167

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 168 GLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 227

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 228 KKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 269


>gi|229096060|ref|ZP_04227034.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
 gi|229115016|ref|ZP_04244427.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
 gi|228668432|gb|EEL23863.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
 gi|228687352|gb|EEL41256.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
          Length = 378

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 52  GKAEHEPQKIASITKIMTALLAAESGKMKEM-----VSVSNEAVRVEGSAIYLKPGQKVK 106

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 107 LEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGS 166

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYR--NRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 167 HYSSAYDMALLTKYAMGN-ETFKKIFGTKTYKSNSWDYPWKNKHKLVTSYYEFATGGKTG 225

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 226 FTKKAGRTLVTTAS--KDGLDLIVVTLSASSDWDD 258


>gi|296186607|ref|ZP_06855009.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           carboxidivorans P7]
 gi|296048644|gb|EFG88076.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           carboxidivorans P7]
          Length = 379

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 118/240 (49%), Gaps = 12/240 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK+MT  +  +Y       L  +I VS  AA    S +  K+    + ++ +  L+ 
Sbjct: 74  ASTTKIMTTLVAIKYGD-----LERKIEVSGKAAGIRGSTVGFKKGEKISLKELLYGLML 128

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           RS ND + A  E +SGS ++F  LM+  A +IG+ NT + +  GL  ++  TTA D A++
Sbjct: 129 RSGNDAAIAIAEGVSGSVEEFVQLMNEYASEIGVLNTHFHSPHGLDYEDHYTTAYDLALI 188

Query: 198 GILLR--KNFPQYYKYFSIRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
               +  K F        +    Y   R   N NK+L ++   +G+KTGYT  +G  +VT
Sbjct: 189 TAKAKEIKLFNDIVSSKDVDGKTYNFTRSYHNINKILWQLPEANGVKTGYTGKAGKCLVT 248

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLM 314
           S + + + ++ VV+     +ER  K  + I  ++ K     +   + +N  S +L K ++
Sbjct: 249 SSKVQGNDVIVVVL---NCRER-WKETKKIYDYVNKNYQFKRIFSKGENAGSINLHKDVL 304


>gi|326939188|gb|AEA15084.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 374

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 48  GKAEHEPQKIASITKIMTALLAAESGKMKEM-----VSVSNEAVRVEGSAIYLKPGQKVK 102

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS   F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 103 LEDLVYGLMLRSGNDAAQVIAESVGGSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGS 162

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 163 HYSSAYDMALLTKYAMGN-ESFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 221

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 222 FTKKAGRTLVTTA--SKDGLDLIVVTLSASSDWDD 254


>gi|229074761|ref|ZP_04207780.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18]
 gi|228708359|gb|EEL60513.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18]
          Length = 378

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 52  GKAEHEPQKIASITKIMTALLAAESGKMKEM-----VSVSNEAVRVEGSAIYLKPGQKVK 106

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 107 LEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGS 166

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYR--NRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 167 HYSSAYDMALLTKYAMGN-ETFKKIFGTKTYKSNSWDYPWKNKHKLVTSYYEFATGGKTG 225

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 226 FTKKAGRTLVTTAS--KDGLDLIVVTLSASSDWDD 258


>gi|149179839|ref|ZP_01858344.1| hypothetical protein BSG1_02450 [Bacillus sp. SG-1]
 gi|148852031|gb|EDL66176.1| hypothetical protein BSG1_02450 [Bacillus sp. SG-1]
          Length = 385

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 129/256 (50%), Gaps = 28/256 (10%)

Query: 33  KILFLSIIMI------SMASELHAKPKY----SSIVIDVNKNQMTGFKQDEPRY-PASLT 81
           K + ++I++I      + A E + KP      S ++ID+    +   K  + R  PAS+T
Sbjct: 2   KKVIIAILLIFITAQTATAEEEYQKPSMLFSESGVMIDMETGTILYSKNAKRRMSPASIT 61

Query: 82  KMMT-LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           K+ T +Y +      +K  LN+ + +SK AA    S +YL E    T +Q ++ ++  S 
Sbjct: 62  KVATAIYAV------EKGDLNSLVTISKEAAETEGSSVYLLEGEKMTLKQLLIGMMINSG 115

Query: 141 NDVSTAFGEFISGSEKKFAILMSN-KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           ND + A  E + GS ++F+  ++    +K G ++T + N  GL++K+  TTA D A++  
Sbjct: 116 NDAAAAIAEHLDGSVEQFSENINQFLEEKAGAKDTHFTNPHGLYEKDHYTTAEDMALITS 175

Query: 200 LLRKNFPQYYKYFSIRKFRYR----NRIITNHNKLLNK---MHNIDGIKTGYTRNSGFNI 252
              KN   +   F++++  ++    N  + NH+K++        + G K GY   S   +
Sbjct: 176 YAMKN-EAFQDLFALKEIGWKGEGWNTTLYNHHKMVKGEVVYPEVTGGKNGYVDESKHTL 234

Query: 253 VTSLRYKDDPIVAVVM 268
           VT+    ++  VAVV+
Sbjct: 235 VTTAS-NENLSVAVVL 249


>gi|47095619|ref|ZP_00233227.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria
           monocytogenes str. 1/2a F6854]
 gi|254899730|ref|ZP_05259654.1| hypothetical protein LmonJ_07951 [Listeria monocytogenes J0161]
 gi|254913067|ref|ZP_05263079.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254937448|ref|ZP_05269145.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|47016049|gb|EAL06974.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria
           monocytogenes str. 1/2a F6854]
 gi|258610050|gb|EEW22658.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|293591068|gb|EFF99402.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 272

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 109/206 (52%), Gaps = 12/206 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL---KEKTYFTTEQGILA 134
           ASLTK+MT +++ E + + +L  + ++ + +     +PS + L    +K  ++      A
Sbjct: 57  ASLTKLMTAFLVLEAVDNNELSWDERLNLVR---LDDPSAVSLYAITQKRTWSVRDLYSA 113

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGL--HDKNQITTA 191
           ++T SAND +   G+ + G++  F   M+N+AKK+GM + T + +ASGL    K+ ++T 
Sbjct: 114 MLTMSANDAAETLGDRLDGAD--FPKEMNNQAKKLGMSSKTTFVSASGLDVDGKSAVSTT 171

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           +D  +L   L    P+  +  S       +   + + N  L  +  +DG+KTG+T  +G+
Sbjct: 172 KDLFLLSSKLISTHPEVLETTSKPTVTTDKGAKLESTNDSLGSIQGLDGLKTGFTDEAGY 231

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQER 276
             + +       ++++V+   T+++R
Sbjct: 232 CFIGTAERGGKRVISIVLDAGTAEKR 257


>gi|315613037|ref|ZP_07887948.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           ATCC 49296]
 gi|315315147|gb|EFU63188.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           ATCC 49296]
          Length = 413

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 107/220 (48%), Gaps = 25/220 (11%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFT 127
           ++P   AS+TK++T+Y+++E L    + L+T + +S    K       S + ++ + Y T
Sbjct: 49  NQPVEIASITKLVTVYLVYEALDQGTISLSTPVDISDYPYKLTTNSEASNVPMEARNY-T 107

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---- 183
            EQ + A +  SAN  + A  E I+GSEK F   M  K  + G+Q+    N +GL+    
Sbjct: 108 VEQLLEATMVSSANSAAIALAEKIAGSEKDFVDKMRAKLLEWGIQDATIVNTTGLNNETL 167

Query: 184 -----------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
                      D+N++ +A D AI+   L +++PQ  +        +    I + N +L 
Sbjct: 168 GDNIYPGSKKDDENKL-SAYDVAIVARNLIRDYPQVLEITKKPTSTFAGLEIHSTNYMLE 226

Query: 233 KM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            M      IDG+KTG T  +G + V +   K   I+ VV+
Sbjct: 227 GMPAYRGGIDGLKTGTTDKAGASFVGTTVEKGMRIITVVL 266


>gi|317057431|ref|YP_004105898.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus
           albus 7]
 gi|315449700|gb|ADU23264.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus
           albus 7]
          Length = 382

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 104/218 (47%), Gaps = 16/218 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DEP   AS TK+M+  I+ E     +  L+ +  V   A     S + L+E    +    
Sbjct: 58  DEPLPMASTTKIMSALIVLE-----QEDLDERFTVDSEAVNTEGSSMGLREGDEVSLRDL 112

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD--KNQIT 189
              ++  S ND + A    ++GS + F  +M+ +A+K+G+++T +   SGL D   +  +
Sbjct: 113 ACGMLLPSGNDAANAAAVRVAGSIENFVGMMNERAEKLGLESTHFVTPSGLDDYTDDHYS 172

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYR------NRIITNHNKLLNKMHNIDGIKTG 243
           TARD A+L     +N   +     +++ +         R + N NKLL K H I GIKTG
Sbjct: 173 TARDMAVLAAEAMEN-QDFRDICGLQRVKLEFGCPPYERWLINTNKLL-KNHGITGIKTG 230

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           +T  +   +V+S   +   ++ V +  P    +D  AL
Sbjct: 231 FTDKARRCLVSSCMREGCELICVTLNDPDDW-KDHMAL 267


>gi|229021621|ref|ZP_04178209.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH1272]
 gi|228739667|gb|EEL90075.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH1272]
          Length = 428

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 116/223 (52%), Gaps = 28/223 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ VS+ A   
Sbjct: 32  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAYNI 91

Query: 111 -ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
              ++ S + L+    +T ++   A+   SAN  + A  E ++G E  F  +M++K+K+ 
Sbjct: 92  SQDRSLSNVPLRNGESYTVKELYEAMAIYSANGATIALAEAVAGKEVDFVKMMNDKSKEF 151

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        ARD AIL   L ++FP+      I 
Sbjct: 152 GLKNYKFVNSTGLTNKDLKGHHPEGTTPDEENKMSARDVAILAQRLIQDFPKTLDIAKIS 211

Query: 216 KFRYR----NRI-ITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R    +RI + N N +L  +      +DG+KTG T  +G
Sbjct: 212 KKVFREGTPDRIEMPNWNWMLKGLIKEYEGVDGLKTGSTPEAG 254


>gi|317058712|ref|ZP_07923197.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 3_1_5R]
 gi|313684388|gb|EFS21223.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 3_1_5R]
          Length = 390

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 111/216 (51%), Gaps = 11/216 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MTL + F+ +++ + H + ++ ++K    +  S + +K    FT    I A   
Sbjct: 169 ASVTKVMTLLVTFDAIRNGEAHFDDKVVITKDVYNKGGSGISMKPGETFTLLDLIRATAI 228

Query: 138 RSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTI-YKNASGL-----HDKNQITT 190
            SAN+ + A  + I  GS   F   M+ KA+++G+   I Y + +GL      +   I T
Sbjct: 229 YSANNAAYAVAKHIGKGSIPNFIKKMNKKAREVGVSKEISYYSPAGLPTRYTKEPMDIGT 288

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRN-RI-ITNHNKLLNKMHNIDGIKTGYTRNS 248
           AR    L +   K +P+Y +   I++ +  N RI I N N L+ +   I GIKTGY + +
Sbjct: 289 ARGIYKLSLEAIK-YPEYMEIAGIKQMKIHNGRISIRNRNHLIGE-EGIYGIKTGYHKEA 346

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +NI  + +      + V++G  + ++RD   L L+
Sbjct: 347 KYNITVASKDGQREFIVVILGGNSYKDRDNAVLHLL 382


>gi|296503035|ref|YP_003664735.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
 gi|296324087|gb|ADH07015.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
          Length = 434

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 121/243 (49%), Gaps = 30/243 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S    K 
Sbjct: 40  SAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKI 99

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ 
Sbjct: 100 SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEF 159

Query: 170 GMQNTIYKNASG---------------LHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           GM++  + N++G               L +KN++ +ARD AIL   L ++FPQ      I
Sbjct: 160 GMKDYKFVNSTGLTNQDLKGYHLEGTTLEEKNKM-SARDCAILAQRLIQDFPQILNTAKI 218

Query: 215 RKFRYRNR-----IITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            K  ++        + N N +L  +      +DG+KTG T  +G     ++      +++
Sbjct: 219 PKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLIS 278

Query: 266 VVM 268
           VV+
Sbjct: 279 VVI 281


>gi|218896498|ref|YP_002444909.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           G9842]
 gi|218543820|gb|ACK96214.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           G9842]
          Length = 374

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 48  GKAEHEPQKIASITKIMTALLAAESGKMKEM-----VSVSNEAVRVEGSAIYLKPGQKVK 102

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS   F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 103 LEDLVYGLMLRSGNDAAQVIAESVGGSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGS 162

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 163 HYSSAYDMALLTKYAMGN-ESFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 221

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 222 FTKKAGRTLVTTA--SKDGLDLIVVTLSASSDWDD 254


>gi|206978265|ref|ZP_03239143.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           H3081.97]
 gi|217959045|ref|YP_002337593.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH187]
 gi|222095199|ref|YP_002529259.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1]
 gi|206743514|gb|EDZ54943.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           H3081.97]
 gi|217067033|gb|ACJ81283.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH187]
 gi|221239257|gb|ACM11967.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1]
          Length = 374

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 48  GKAEHEPQKIASITKIMTALLAAESGKMKEM-----VSVSNEAVRVEGSAIYLKPGQKVK 102

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 103 LEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGS 162

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 163 HYSSAYDMALLTRYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 221

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 222 FTKKAGRTLVTTA--SKDGLDLIVVTLSASSDWDD 254


>gi|229138262|ref|ZP_04266857.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
 gi|229195769|ref|ZP_04322529.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
 gi|228587666|gb|EEK45724.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
 gi|228645154|gb|EEL01391.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
          Length = 378

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 52  GKAEHEPQKIASITKIMTALLAAESGKMKEM-----VSVSNEAVRVEGSAIYLKPGQKVK 106

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 107 LEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGS 166

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 167 HYSSAYDMALLTRYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 225

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 226 FTKKAGRTLVTTA--SKDGLDLIVVTLSASSDWDD 258


>gi|228984648|ref|ZP_04144821.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775042|gb|EEM23435.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 362

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 36  GKAEHEPQKIASITKIMTALLAAESGKMKEM-----VSVSNEAVRVEGSAIYLKPGQKVK 90

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 91  LEDIVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGS 150

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 151 HYSSAYDMALLTRYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 209

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 210 FTKKAGRTLVTTAS--KDELDLIVVTLSASSDWDD 242


>gi|229172207|ref|ZP_04299771.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
 gi|228611195|gb|EEK68453.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
          Length = 362

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 36  GKAEHEPQKIASITKIMTALLAAESGKMKEM-----VSVSNEAVRVEGSAIYLKPGQKVK 90

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 91  LEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGS 150

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 151 HYSSAYDMALLTKYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 209

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 210 FTKKAGRTLVTTAS--KDGLDLIVVTLSASSDWDD 242


>gi|228477390|ref|ZP_04062026.1| D-Alanyl-D-Alanine carboxypeptidase [Streptococcus salivarius
           SK126]
 gi|228250825|gb|EEK10013.1| D-Alanyl-D-Alanine carboxypeptidase [Streptococcus salivarius
           SK126]
          Length = 446

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 121/256 (47%), Gaps = 31/256 (12%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +PK SS++ID N   +      DE R PAS++K M+LY++F+ L   ++  +T I    T
Sbjct: 43  RPK-SSLLIDANTGDILWQDNIDEVRDPASMSKAMSLYLVFDALSKGEIKEDTVITAKPT 101

Query: 110 ----AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSN 164
               A     S   +     +T  + I      S+N  +     ++S ++  K+   M+ 
Sbjct: 102 DEAIANIYEISNNKIVSGVKYTVSELITMTAVPSSNAATVMLANYLSDNDPDKWIDRMNE 161

Query: 165 KAKKIGMQNTIYKNASGL-------------HDKNQI--TTARDQAILGILLRKNFPQYY 209
           K+K++GM NT + NASG              +D N    TTARD +I+   L K+ P+  
Sbjct: 162 KSKELGMTNTKWYNASGAGAASYKGYYTPKRYDNNHSNQTTARDLSIMAYNLIKHHPEIL 221

Query: 210 KYFS-----IRKFRYRNRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           KY S     ++K         N+N  L      +  +DG+KTG +    +N +++ +  +
Sbjct: 222 KYTSQQTVTVKKGTPYEETFENYNYSLPGADYGLKGVDGLKTGSSPRGDYNYISTCKRGN 281

Query: 261 DPIVAVVMGMPTSQER 276
             +++V++G+   ++ 
Sbjct: 282 QRVISVILGVGNWEDE 297


>gi|257466039|ref|ZP_05630350.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 381

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 111/216 (51%), Gaps = 11/216 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MTL + F+ +++ + H + ++ ++K    +  S + +K    FT    I A   
Sbjct: 160 ASVTKVMTLLVTFDAIRNGEAHFDDKVVITKDVYNKGGSGISMKPGEKFTLLDLIRATAI 219

Query: 138 RSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTI-YKNASGL-----HDKNQITT 190
            SAN+ + A  + I  GS   F   M+ KA+++G+   I Y + +GL      +   I T
Sbjct: 220 YSANNAAYAVAKHIGKGSIPNFIKKMNKKAREVGVSKEISYYSPAGLPTRYTKEPMDIGT 279

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRN-RI-ITNHNKLLNKMHNIDGIKTGYTRNS 248
           AR    L +   K +P+Y +   I++ +  N RI I N N L+ +   I GIKTGY + +
Sbjct: 280 ARGIYKLSLEAIK-YPEYMEIAGIKQMKIHNGRISIRNRNHLIGE-EGIYGIKTGYHKEA 337

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +NI  + +      + V++G  + ++RD   L L+
Sbjct: 338 KYNITVASKDGQREFIVVILGGNSYKDRDNAVLHLL 373


>gi|228921188|ref|ZP_04084518.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228838504|gb|EEM83815.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 416

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 121/243 (49%), Gaps = 30/243 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S    K 
Sbjct: 22  SAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKI 81

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ 
Sbjct: 82  SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIAGKEVNFVKMMNDKSKEF 141

Query: 170 GMQNTIYKNASG---------------LHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           GM++  + N++G               L +KN++ +ARD AIL   L ++FPQ      I
Sbjct: 142 GMKDYKFVNSTGLTNQDLKGYHLEGTTLDEKNKM-SARDCAILAQRLIQDFPQILNTAKI 200

Query: 215 RKFRYRNR-----IITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            K  ++        + N N +L  +      +DG+KTG T  +G     ++      +++
Sbjct: 201 PKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLIS 260

Query: 266 VVM 268
           VV+
Sbjct: 261 VVI 263


>gi|315917196|ref|ZP_07913436.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313691071|gb|EFS27906.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 388

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 111/216 (51%), Gaps = 11/216 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MTL + F+ +++ + H + ++ ++K    +  S + +K    FT    I A   
Sbjct: 167 ASVTKVMTLLVTFDAIRNGEAHFDDKVVITKDVYNKGGSGISMKPGEKFTLLDLIRATAI 226

Query: 138 RSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTI-YKNASGL-----HDKNQITT 190
            SAN+ + A  + I  GS   F   M+ KA+++G+   I Y + +GL      +   I T
Sbjct: 227 YSANNAAYAVAKHIGKGSIPNFIKKMNKKAREVGVSKEISYYSPAGLPTRYTKEPMDIGT 286

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRN-RI-ITNHNKLLNKMHNIDGIKTGYTRNS 248
           AR    L +   K +P+Y +   I++ +  N RI I N N L+ +   I GIKTGY + +
Sbjct: 287 ARGIYKLSLEAIK-YPEYMEIAGIKQMKIHNGRISIRNRNHLIGE-EGIYGIKTGYHKEA 344

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +NI  + +      + V++G  + ++RD   L L+
Sbjct: 345 KYNITVASKDGQREFIVVILGGNSYKDRDNAVLHLL 380


>gi|228908234|ref|ZP_04072080.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis IBL 200]
 gi|228851432|gb|EEM96240.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis IBL 200]
          Length = 442

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 121/243 (49%), Gaps = 30/243 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S    K 
Sbjct: 48  SAILIEANSGKILYQKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKI 107

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ 
Sbjct: 108 SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIAGKEGNFVKMMNDKSKEF 167

Query: 170 GMQNTIYKNASG---------------LHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           GM++  + N++G               L +KN++ +ARD AIL   L ++FPQ      I
Sbjct: 168 GMKDYKFVNSTGLTNQDLKGYHLEGTTLDEKNKM-SARDCAILAQRLIQDFPQILNTAKI 226

Query: 215 RKFRYRNR-----IITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            K  ++        + N N +L  +      +DG+KTG T  +G     ++      +++
Sbjct: 227 PKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLIS 286

Query: 266 VVM 268
           VV+
Sbjct: 287 VVI 289


>gi|196041942|ref|ZP_03109229.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           NVH0597-99]
 gi|196027197|gb|EDX65817.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           NVH0597-99]
          Length = 438

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 43  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKV 102

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K++
Sbjct: 103 SQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKEL 162

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 163 GLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 222

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 223 KKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 264


>gi|206967983|ref|ZP_03228939.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH1134]
 gi|206736903|gb|EDZ54050.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH1134]
          Length = 374

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 48  GKAEHEPQKIASITKIMTALLAAESGKMKEM-----VSVSNEAVRVEGSAIYLKPGQKVK 102

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS   F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 103 LEDLVYGLMLRSGNDAAQVIAESVGGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGS 162

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 163 HYSSAYDMALLTKYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 221

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 222 FTKKAGRTLVTTAS--KDGLDLIVVTLSASSDWDD 254


>gi|229127885|ref|ZP_04256871.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BDRD-Cer4]
 gi|228655650|gb|EEL11502.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BDRD-Cer4]
          Length = 416

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 121/243 (49%), Gaps = 30/243 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S    K 
Sbjct: 22  SAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKI 81

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ 
Sbjct: 82  SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEF 141

Query: 170 GMQNTIYKNASG---------------LHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           GM++  + N++G               L +KN++ +ARD AIL   L ++FPQ      I
Sbjct: 142 GMKDYKFVNSTGLTNQDLKGYHLEGTTLEEKNKM-SARDCAILAQRLIQDFPQILNTAKI 200

Query: 215 RKFRYRNR-----IITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            K  ++        + N N +L  +      +DG+KTG T  +G     ++      +++
Sbjct: 201 PKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLIS 260

Query: 266 VVM 268
           VV+
Sbjct: 261 VVI 263


>gi|49183048|ref|YP_026300.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
           Sterne]
 gi|165873233|ref|ZP_02217844.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A0488]
 gi|167635043|ref|ZP_02393360.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A0442]
 gi|167641737|ref|ZP_02399980.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A0193]
 gi|170688916|ref|ZP_02880118.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A0465]
 gi|170707518|ref|ZP_02897971.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A0389]
 gi|177655678|ref|ZP_02937003.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A0174]
 gi|190569327|ref|ZP_03022219.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           Tsiankovskii-I]
 gi|196036362|ref|ZP_03103759.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus W]
 gi|218901215|ref|YP_002449049.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           AH820]
 gi|227812687|ref|YP_002812696.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. CDC 684]
 gi|254686602|ref|ZP_05150461.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. CNEVA-9066]
 gi|254724155|ref|ZP_05185940.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A1055]
 gi|254737010|ref|ZP_05194715.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. Western North America USA6153]
 gi|254755970|ref|ZP_05208002.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. Vollum]
 gi|254761669|ref|ZP_05213687.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. Australia 94]
 gi|49176975|gb|AAT52351.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
           Sterne]
 gi|164711031|gb|EDR16597.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A0488]
 gi|167510291|gb|EDR85694.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A0193]
 gi|167529517|gb|EDR92267.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A0442]
 gi|170127514|gb|EDS96388.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A0389]
 gi|170667140|gb|EDT17901.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A0465]
 gi|172080018|gb|EDT65118.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A0174]
 gi|190559549|gb|EDV13542.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           Tsiankovskii-I]
 gi|195990992|gb|EDX54963.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus W]
 gi|218539949|gb|ACK92347.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           AH820]
 gi|227002528|gb|ACP12271.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. CDC 684]
          Length = 438

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 43  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKV 102

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K++
Sbjct: 103 SQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKEL 162

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 163 GLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 222

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 223 KKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 264


>gi|228907200|ref|ZP_04071061.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           200]
 gi|228852421|gb|EEM97214.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           200]
          Length = 378

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 52  GKAEHEPQKIASITKIMTALLAAESGKMKEM-----VSVSNEAVRVEGSAIYLKPGQKVK 106

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS   F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 107 LEDLVYGLMLRSGNDAAQVIAESVGGSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGS 166

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 167 HYSSAYDMALLTKYAMGN-ESFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 225

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 226 FTKKAGRTLVTTA--SKDGLDLIVVTLSASSDWDD 258


>gi|229073057|ref|ZP_04206247.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus F65185]
 gi|228710062|gb|EEL62046.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus F65185]
          Length = 416

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 121/243 (49%), Gaps = 30/243 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S    K 
Sbjct: 22  SAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKI 81

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ 
Sbjct: 82  SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEF 141

Query: 170 GMQNTIYKNASG---------------LHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           GM++  + N++G               L +KN++ +ARD AIL   L ++FPQ      I
Sbjct: 142 GMKDYKFVNSTGLTNQDLKGYHLEGTTLEEKNKM-SARDCAILAQRLIQDFPQILNTAKI 200

Query: 215 RKFRYRNR-----IITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            K  ++        + N N +L  +      +DG+KTG T  +G     ++      +++
Sbjct: 201 PKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLIS 260

Query: 266 VVM 268
           VV+
Sbjct: 261 VVI 263


>gi|228951945|ref|ZP_04114043.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229069121|ref|ZP_04202413.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
 gi|229078751|ref|ZP_04211305.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
 gi|229177976|ref|ZP_04305348.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
 gi|228605464|gb|EEK62913.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
 gi|228704624|gb|EEL57056.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
 gi|228714066|gb|EEL65949.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
 gi|228807868|gb|EEM54389.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 363

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 37  GKAEHEPQKIASITKIMTALLAAESGKMKEM-----VSVSNEAVRVEGSAIYLKPGQKVK 91

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS   F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 92  LEDLVYGLMLRSGNDAAQVIAESVGGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGS 151

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 152 HYSSAYDMALLTKYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 210

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 211 FTKKAGRTLVTTAS--KDGLDLIVVTLSASSDWDD 243


>gi|229189650|ref|ZP_04316665.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
 gi|228593914|gb|EEK51718.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
          Length = 363

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 37  GKAEHEPQKIASITKIMTALLAAESGKMKEM-----VSVSNEAVRVEGSAIYLKPGQKVK 91

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS   F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 92  LEDLVYGLMLRSGNDAAQVIAESVGGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGS 151

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 152 HYSSAYDMALLTKYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 210

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 211 FTKKAGRTLVTTAS--KDGLDLIVVTLSASSDWDD 243


>gi|153814890|ref|ZP_01967558.1| hypothetical protein RUMTOR_01105 [Ruminococcus torques ATCC 27756]
 gi|331089590|ref|ZP_08338489.1| hypothetical protein HMPREF1025_02072 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847921|gb|EDK24839.1| hypothetical protein RUMTOR_01105 [Ruminococcus torques ATCC 27756]
 gi|330404958|gb|EGG84496.1| hypothetical protein HMPREF1025_02072 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 350

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 101/221 (45%), Gaps = 26/221 (11%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN--PSKLYLKEKTY 125
           G+K  +  YPAS TK+MT Y+  +Y      +L+  + +S T+   N   S   L     
Sbjct: 117 GYKLFDKLYPASTTKVMTAYLALKYG-----NLDDVVTMSATSTNFNWDESTCGLSAGDS 171

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            T    I  L+ +S ND + A  E ISGS++ FA LM+ +AK++G   T + N  GLHD+
Sbjct: 172 LTLYDLICGLLLQSGNDCAAAIAEHISGSQEAFAELMNTEAKQLGATGTHFVNPHGLHDE 231

Query: 186 NQITTA-----------RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
           N  TT            +DQA L I+   ++    K  S     Y       +     + 
Sbjct: 232 NHYTTTYDLYLMFNEALKDQAFLDIISMNSYTA--KVTSADGTSYTPTWQATNYYSAGEA 289

Query: 235 HNIDGI-----KTGYTRNSGFNIVTSLR-YKDDPIVAVVMG 269
              DGI     KTG T  +G  ++   +    +P ++V+MG
Sbjct: 290 TPPDGIHVYGGKTGTTDQAGNCVILYEKNTAGEPYISVIMG 330


>gi|164686848|ref|ZP_02210876.1| hypothetical protein CLOBAR_00444 [Clostridium bartlettii DSM
           16795]
 gi|164604238|gb|EDQ97703.1| hypothetical protein CLOBAR_00444 [Clostridium bartlettii DSM
           16795]
          Length = 336

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 122/257 (47%), Gaps = 34/257 (13%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR--YPASLTKMMTLYIIFEYLQSKKLH 99
           ISM    HA      +V+D N  ++    QD  +  YPAS TK++T  +  E       +
Sbjct: 46  ISMGVSAHAY-----VVMDANSGEII-MSQDADKKIYPASTTKLLTAVVAIE-----NCN 94

Query: 100 LNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           L+ +I V + A  +     S + L+  + +T EQ +  L+  SA D +    E ++GS +
Sbjct: 95  LDREIEVKQAALNKVDVESSIVGLRAGSTYTMEQLLYMLLIVSAGDAAEVIAEEVAGSSE 154

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGL--HDKNQI-TTARDQAILGILLRKNFP----QYY 209
            FA +M+ KAK+IGM ++ + N  G+  H   +I +TA D A L      N+       +
Sbjct: 155 AFATMMNEKAKQIGMTDSYFDNPVGMDWHSNAKIHSTAHDIAKLTQYAMANYEIRKIVRH 214

Query: 210 KYFSIRKFRYRNRIIT--NHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
            ++++  F Y  + IT  + N  L K      +  + G KTG T  +GF + T+   KD+
Sbjct: 215 SFYTVDNF-YNGKSITLGSSNGFLRKRKYADNLFTVIGSKTGTTDKAGFALTTTA--KDN 271

Query: 262 PIVAVVMGMPTSQERDQ 278
               V+     +  RD+
Sbjct: 272 EGREVICAFFGNSTRDK 288


>gi|228900148|ref|ZP_04064381.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           4222]
 gi|228859554|gb|EEN03981.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           4222]
          Length = 362

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 36  GKAEHEPQKIASITKIMTALLAAESGKMKEM-----VSVSNEAVRVEGSAIYLKPGQKVK 90

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS   F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 91  LEDLVYGLMLRSGNDAAQVIAESVGGSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGS 150

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 151 HYSSAYDMALLTKYAMGN-ESFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 209

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 210 FTKKAGRTLVTTAS--KDGLDLIVVTLSASSDWDD 242


>gi|229150695|ref|ZP_04278909.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus m1550]
 gi|228632782|gb|EEK89397.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus m1550]
          Length = 416

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 121/243 (49%), Gaps = 30/243 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S    K 
Sbjct: 22  SAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKI 81

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ 
Sbjct: 82  SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEF 141

Query: 170 GMQNTIYKNASG---------------LHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           GM++  + N++G               L +KN++ +ARD AIL   L ++FPQ      I
Sbjct: 142 GMKDYKFVNSTGLTNQDLKGYHLEGTTLEEKNKM-SARDCAILAQRLIQDFPQILNTAKI 200

Query: 215 RKFRYRNR-----IITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            K  ++        + N N +L  +      +DG+KTG T  +G     ++      +++
Sbjct: 201 PKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLIS 260

Query: 266 VVM 268
           VV+
Sbjct: 261 VVI 263


>gi|228918964|ref|ZP_04082345.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228840679|gb|EEM85939.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 443

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 48  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKV 107

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K++
Sbjct: 108 SQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKEL 167

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 168 GLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 227

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 228 KKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 269


>gi|254744208|ref|ZP_05201889.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. Kruger B]
          Length = 438

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 112/222 (50%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 43  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKV 102

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K++
Sbjct: 103 SQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKEL 162

Query: 170 GMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL               D+    +A+D A L   L K++P+      I 
Sbjct: 163 GLKNYKFVNSTGLTNKDLKGMHPEGXXADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 222

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 223 KKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 264


>gi|254830752|ref|ZP_05235407.1| hypothetical protein Lmon1_05309 [Listeria monocytogenes 10403S]
          Length = 272

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 109/206 (52%), Gaps = 12/206 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL---KEKTYFTTEQGILA 134
           ASL+K+MT +++ E + + +L  + ++ + +     +PS + L    +K  ++      A
Sbjct: 57  ASLSKLMTAFLVLEAVDNNELSWDEKLNLVR---LDDPSAVSLYAITQKRTWSVRDLYSA 113

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGL--HDKNQITTA 191
           ++T SAND +   G+ + G++  F   M+N+AKK GM + T + +ASGL    K+ ++T 
Sbjct: 114 MLTMSANDAAETLGDRLDGAD--FPKEMNNQAKKSGMSSKTTFVSASGLDVDGKSAVSTT 171

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           +D  +L   L    P+  +  S       +   + + N LL  +  +DG+KTG+T  +G+
Sbjct: 172 KDLFLLSSKLISTHPEVLETTSKPTVTTDKGAKLESTNDLLGSIQGLDGLKTGFTDEAGY 231

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQER 276
             + +       ++++V+   T+++R
Sbjct: 232 CFIGTAERGGKRVISIVLDAGTAEKR 257


>gi|228938680|ref|ZP_04101285.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228971562|ref|ZP_04132186.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978173|ref|ZP_04138551.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
 gi|228781645|gb|EEM29845.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
 gi|228788221|gb|EEM36176.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821056|gb|EEM67076.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 378

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 52  GKAEHEPQKIASITKIMTALLAAESGKMKEM-----VSVSNEAVRVEGSAIYLKPGQKVK 106

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS   F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 107 LEDLVYGLMLRSGNDAAQVIAESVGGSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGS 166

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 167 HYSSAYDMALLTKYAMGN-ESFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 225

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 226 FTKKAGRTLVTTA--SKDGLDLIVVTLSASSDWDD 258


>gi|229155136|ref|ZP_04283248.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
 gi|228628263|gb|EEK84978.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
          Length = 378

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 52  GKAEHEPQKIASITKIMTALLAAESGKMKEM-----VSVSNEAVRVEGSAIYLKPGQKVK 106

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 107 LEDIVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGS 166

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 167 HYSSAYDMALLTRYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 225

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 226 FTKKAGRTLVTTA--SKDGLDLIVVTLSASSDWDD 258


>gi|228925267|ref|ZP_04088365.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228931516|ref|ZP_04094424.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|229119676|ref|ZP_04248939.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus 95/8201]
 gi|228663767|gb|EEL19344.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus 95/8201]
 gi|228828134|gb|EEM73860.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228834381|gb|EEM79920.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 443

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 48  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKV 107

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K++
Sbjct: 108 SQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKEL 167

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 168 GLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 227

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 228 KKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 269


>gi|218897430|ref|YP_002445841.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9842]
 gi|218545638|gb|ACK98032.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9842]
          Length = 437

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 121/243 (49%), Gaps = 30/243 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S    K 
Sbjct: 43  SAILIEANSGKILYQKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKI 102

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ 
Sbjct: 103 SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIAGKEGNFVKMMNDKSKEF 162

Query: 170 GMQNTIYKNASG---------------LHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           GM++  + N++G               L +KN++ +ARD AIL   L ++FPQ      I
Sbjct: 163 GMKDYKFVNSTGLTNQDLKGYHLEGTTLDEKNKM-SARDCAILAQRLIQDFPQILNTAKI 221

Query: 215 RKFRYRNR-----IITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            K  ++        + N N +L  +      +DG+KTG T  +G     ++      +++
Sbjct: 222 PKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLIS 281

Query: 266 VVM 268
           VV+
Sbjct: 282 VVI 284


>gi|152974993|ref|YP_001374510.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023745|gb|ABS21515.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH
           391-98]
          Length = 373

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 10/192 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G ++ EP+  AS+TK+MT  +  E  + K++     + +S  A     S +YLK      
Sbjct: 47  GKREHEPQKIASITKIMTALLAAESGKMKEM-----VSISNKAVRVEGSAIYLKPGQKVK 101

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND + A  E + GS + F  LM+ KAK+IGM++T + N  GL  D  
Sbjct: 102 LEDLVYGLMLRSGNDAAQAIAEKVGGSIEGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGT 161

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYR--NRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 162 HYSSAYDMALLTKYAMGN-ETFRKIFGTKTYQSESWDYPWKNKHKLVTSYYEFATGGKTG 220

Query: 244 YTRNSGFNIVTS 255
           +T+ +G  +VT+
Sbjct: 221 FTKKAGRTLVTT 232


>gi|47569141|ref|ZP_00239829.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus
           G9241]
 gi|47554212|gb|EAL12575.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus
           G9241]
          Length = 374

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 48  GKAEHEPQKIASITKIMTALLAAESGKMKEM-----VSVSNEAVRVEGSAIYLKPGQKVK 102

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 103 LEDIVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGS 162

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 163 HYSSAYDMALLTRYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 221

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 222 FTKKAGRTLVTTA--SKDGLDLIVVTLSASSDWDD 254


>gi|333009575|gb|EGK29027.1| D-alanyl-D-alanine carboxypeptidase dacC domain protein [Shigella
           flexneri K-272]
 gi|333020502|gb|EGK39765.1| D-alanyl-D-alanine carboxypeptidase dacC domain protein [Shigella
           flexneri K-227]
          Length = 154

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 73/130 (56%), Gaps = 11/130 (8%)

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-----KYFSIRK 216
           M+  AKK+G+ NT ++   GL    Q +T RD A+LG  L  + P+ Y     K F+  K
Sbjct: 1   MNGYAKKLGLTNTTFQTVHGLDAPGQFSTVRDMALLGKALIHDVPEEYAIHKEKEFTFNK 60

Query: 217 FRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
            R  NR     N+LL   + N+DG+KTG T  +G+N+V S    D  +++VV+G  T + 
Sbjct: 61  IRQPNR-----NRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRI 115

Query: 276 RDQKALELIT 285
           R  ++ +L+T
Sbjct: 116 RFNESEKLLT 125


>gi|311070657|ref|YP_003975580.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942]
 gi|310871174|gb|ADP34649.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942]
          Length = 441

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 134/281 (47%), Gaps = 36/281 (12%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY--------SSIVIDVNKNQMTGFKQDEPR 75
           I++  QLM     L++I+  +A    AK           ++I+I+ +  ++   K  + R
Sbjct: 3   IKKCKQLMMSFFVLTLIVTCLAPMSRAKAASDPIDVNASAAIMIEASSGKILYSKNADKR 62

Query: 76  YP-ASLTKMMTLYIIFEYLQSKKLHLN-TQIP---VSKTAATQNPSKLYLKEKTYFTTEQ 130
            P AS+TKMMT Y++ E +   K+  + T  P   V + +   + S + L++   +T ++
Sbjct: 63  LPIASMTKMMTEYLLLEAIDEGKVKWDQTYTPDDYVYEISQDNSLSNVPLRKDGKYTVKE 122

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH------- 183
              A    SAN  + A  E ++GSE KF   M+ KAK++G+ N  + NA+GL        
Sbjct: 123 LYQATAIYSANAAAIALAEVMAGSETKFVDKMNAKAKELGLTNFKFVNATGLENKDLHGK 182

Query: 184 -------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHN--- 228
                  D+    +A+D AIL   L  ++P+     SI K ++R        + N N   
Sbjct: 183 QPEGTSVDEESEVSAKDMAILADRLITDYPEILDTASIAKTKFREGTDDEMDMPNWNFML 242

Query: 229 -KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             L+++   +DG+KTG T ++G    ++       ++ VV+
Sbjct: 243 KGLVSEYKGVDGLKTGSTDSAGSCFTSTAERNGMRVITVVL 283


>gi|227892363|ref|ZP_04010168.1| D-alanyl-D-alanine serine family carboxypeptidase [Lactobacillus
           salivarius ATCC 11741]
 gi|227865770|gb|EEJ73191.1| D-alanyl-D-alanine serine family carboxypeptidase [Lactobacillus
           salivarius ATCC 11741]
          Length = 417

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 119/255 (46%), Gaps = 28/255 (10%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI- 104
           +L AK   S+I +D    Q+   K D+  YP AS++K++T YI+ + +   ++   T++ 
Sbjct: 37  DLEAK---SAIAVDAKTGQIIYAKDDKQTYPVASMSKLLTAYILLQAIHKGEITWETRVT 93

Query: 105 PVSKTAATQNPSKLY---LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
           P +      N ++L    L+E   +T  Q   A++  SAN  +   G  ISG++ KF   
Sbjct: 94  PTATEVDISNNTELTNVPLQEGHSYTIRQLYQAMLVGSANAATMLIGNAISGTQTKFIDK 153

Query: 162 MSNKAKKIGMQNTIYKNASGL------------HDKNQIT--TARDQAILGILLRKNFPQ 207
           M   AK +G+ +    +A+GL             D+N     + RD AI+   L K +P+
Sbjct: 154 MRETAKSLGITDAKIYSANGLTAKYLGDEIYPNTDENAENEFSVRDMAIISQKLIKEYPE 213

Query: 208 YYKY--FSIRKFRYRNRIIT--NHNKLLNKMHN--IDGIKTGYTRNSGFNIVTSLRYKDD 261
             +    ++  F     I T  N N+LL    N  +DG+KTG +  +G+   ++      
Sbjct: 214 ILETTKLTMIDFNDNGEITTVNNTNELLQDDSNLEVDGLKTGTSDAAGYCFASTTNKDGH 273

Query: 262 PIVAVVMGMPTSQER 276
            I+ V+ G   +  R
Sbjct: 274 RIITVIAGAKDNDAR 288


>gi|49478184|ref|YP_034369.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
           carboxypeptidase) [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49329740|gb|AAT60386.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
           carboxypeptidase) [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 438

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 43  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKV 102

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K++
Sbjct: 103 SQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKEL 162

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 163 GLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 222

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 223 KKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 264


>gi|257462931|ref|ZP_05627336.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. D12]
 gi|317060551|ref|ZP_07925036.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. D12]
 gi|313686227|gb|EFS23062.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. D12]
          Length = 379

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 111/216 (51%), Gaps = 11/216 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MTL + F+ +++ + HL  ++ ++K    +  S + +K    FT    I A   
Sbjct: 158 ASVTKVMTLLVTFDAIRNGEAHLEDKVVITKDVYNKGGSGISMKPGETFTLLDLIRATAI 217

Query: 138 RSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTI-YKNASGL-----HDKNQITT 190
            SAN+ + A  + I  GS   F   M+ KA+++G+   I Y + +GL      +   I T
Sbjct: 218 YSANNAAYAVAKHIGKGSISNFIKKMNKKAREMGISKEISYYSPAGLPSRYTKEPMDIGT 277

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFR-YRNRI-ITNHNKLLNKMHNIDGIKTGYTRNS 248
           AR    L +   K +P+Y K   I++ + +  +I I N N L+ +   I GIKTGY + +
Sbjct: 278 ARGIYKLSLEAIK-YPEYMKIAGIKQMKIHHGKINIRNRNHLIGE-EGIYGIKTGYHKEA 335

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +NI  + +      + V++G  + ++RD   L L+
Sbjct: 336 KYNITVASKDGSREFIVVILGGESYKDRDNAVLRLL 371


>gi|228943820|ref|ZP_04106207.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228815844|gb|EEM62078.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 443

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 48  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKV 107

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K++
Sbjct: 108 SQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKEL 167

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 168 GLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 227

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 228 KKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 269


>gi|229170862|ref|ZP_04298467.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus MM3]
 gi|228612597|gb|EEK69814.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus MM3]
          Length = 417

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 22  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKV 81

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K++
Sbjct: 82  SQDASLSNVALENGGIYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKEL 141

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 142 GLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 201

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 202 KKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 243


>gi|225574472|ref|ZP_03783082.1| hypothetical protein RUMHYD_02547 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038322|gb|EEG48568.1| hypothetical protein RUMHYD_02547 [Blautia hydrogenotrophica DSM
           10507]
          Length = 396

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 106/212 (50%), Gaps = 20/212 (9%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTT 128
           D+  YPAS TK+MT  ++ E  +     L T+I  ++T     T + + +  +     T 
Sbjct: 54  DQRMYPASTTKIMTALVVLENTED----LQTKITFTETGTKEVTPDSANIQAQLGEELTV 109

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           EQ + A +  SAN+VS+   EF+ G+++ F  +M+ KA+++G  +T + N +GL D+N  
Sbjct: 110 EQCLYASLLASANEVSSQLAEFVGGTKEHFVEMMNLKAQELGCSDTHFTNPNGLPDENHY 169

Query: 189 TTARDQAIL--GILLRKNF-----PQYYKYFSIRKFRYRNRIITNHNKLL--NKMHNIDG 239
           TTA D A++    +  + F      Q Y   +  K     R +TNH+ +L        +G
Sbjct: 170 TTAHDLALIMQAAIQNETFREIESTQTYTIPATNK-TATPRNLTNHHAMLVSGNPSYYEG 228

Query: 240 I---KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
               KTG+T  +   +VT+       ++ VV+
Sbjct: 229 AFAGKTGHTDAAKDTLVTAAEKNGMTLICVVL 260


>gi|260437596|ref|ZP_05791412.1| serine-type D-Ala-D-Ala carboxypeptidase [Butyrivibrio crossotus
           DSM 2876]
 gi|292809949|gb|EFF69154.1| serine-type D-Ala-D-Ala carboxypeptidase [Butyrivibrio crossotus
           DSM 2876]
          Length = 443

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 118/263 (44%), Gaps = 23/263 (8%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D+  YPAS TKMMT  +  E      +   ++  V   +       + + E+   T EQ 
Sbjct: 58  DKKCYPASTTKMMTALLTIENTSMSDVVTYSKAAVDSVSPGDANVGIAVGEQ--LTVEQS 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  L+ RSANDV+    E++ G+   FA +M++KA  +G  +T + N SGL ++   +T 
Sbjct: 116 LYCLMLRSANDVAYGLAEYVGGTASGFASMMNDKAAALGAVSTHFSNPSGLTNEFHYSTP 175

Query: 192 RDQAILGILLRK-----NFPQYYKYFSIRKFRYRN--RIITNHNKLLN----KMHNIDGI 240
            D A++G          N   Y   + I K    N  R  T+  ++L     +     G 
Sbjct: 176 YDMALIGRACFNNKTLVNIMSYTGVYKIGKTNTNNNIRYYTHRFQMLKGGEYEYRYSKGG 235

Query: 241 KTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTH 299
           KTGYT  +G N + S   KD   +V  VM   T+  R   ++ L   +L      +++ +
Sbjct: 236 KTGYTDAAG-NCLVSFAEKDGIRLVCSVMN-STASGRYTDSIALFDYYLN----NYRKCY 289

Query: 300 RKDNLSSTSLKKSLMIKKLKRTY 322
             DN  S+S   S  +  L  TY
Sbjct: 290 LDDNNMSSS---SFGLDALDITY 309


>gi|229156148|ref|ZP_04284246.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
 gi|228627331|gb|EEK84060.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
          Length = 338

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 122/229 (53%), Gaps = 17/229 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S+I+I+ +  ++   K +E P   A+L+K+MT YI  E L    + L+  + +S     A
Sbjct: 37  SAILINAHSGEVVYKKNEETPIQSATLSKLMTEYITLEQLNEGTIQLDEVVKISNEVFRA 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             +P ++  K+KT  T    +  L+    N  + A  E I+G+E  F  LM+ KAK++ +
Sbjct: 97  ETSPIQVTSKDKT--TVRDLLHTLLLTGNNRSALALAEHIAGNEDNFTQLMNEKAKQLKL 154

Query: 172 -QNTIYKNASGL-HDKNQI--TTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIIT 225
            Q + + NA+G+ +D N++  TTA + A L   L  +FP        +  +F +++  + 
Sbjct: 155 SQPSPFLNATGMNNDTNKLSTTTAIEVAKLATQLVTDFPDVLNVTKLTSYQFTFKDTKVF 214

Query: 226 NHNKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N NK+   LN   K   +DG++T ++ N  ++ V++ +  D  +++V++
Sbjct: 215 NTNKMIYSLNKNIKHQGVDGLQTSFSTNGNYSFVSTAKRGDTRLISVIL 263


>gi|206972675|ref|ZP_03233615.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           AH1134]
 gi|206732395|gb|EDZ49577.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           AH1134]
          Length = 438

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 43  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKV 102

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K++
Sbjct: 103 SQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKEL 162

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 163 GLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 222

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 223 KKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 264


>gi|317056794|ref|YP_004105261.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus
           albus 7]
 gi|315449063|gb|ADU22627.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus
           albus 7]
          Length = 387

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 109/246 (44%), Gaps = 5/246 (2%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPAS-LTKMMTLYIIFEYLQSKKLHL 100
           +S+   L+A P    I ++ N  Q+   K    +   S L K+M + +  E L+S +L L
Sbjct: 30  VSVEDMLYAMPAREIIAVECNTGQVLFEKNSCEKTEISHLAKLMLVLLAAEKLKSGELSL 89

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
              + VS  A +    +++L +    + E+ + A+   +AND + A  E I GS      
Sbjct: 90  TDTVTVSANANSMPAPQIWLDKNEKISAEELLKAITIGNANDAAVALAEHIFGSTDNAVT 149

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSIRKFR 218
            M+ KAK + M+ T Y +  GL D   +  A D A L   L K      Y+K + I + R
Sbjct: 150 QMNRKAKLLDMKLTEYADVCGL-DSRTVADAADTAKLASELVKYDILTDYFKTW-IDRVR 207

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                + N N+L+     I G+K   +  +G   V +    D  +  VV+G       D 
Sbjct: 208 SGKAELVNLNRLVRTYKGISGMKACSSSAAGECSVVTASRGDMEVAVVVLGCTDRSMCDD 267

Query: 279 KALELI 284
            A +L+
Sbjct: 268 IAQKLL 273


>gi|229083326|ref|ZP_04215686.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-44]
 gi|228699973|gb|EEL52598.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-44]
          Length = 449

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 112/232 (48%), Gaps = 27/232 (11%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFT 127
           DE    AS+TKMM+ Y++ + +   KL  + ++ VS    K +  ++ S + L+    +T
Sbjct: 71  DELLAIASMTKMMSEYLVHKAVDQGKLKWDQKVKVSEYAYKVSQDRSLSNVPLENGGSYT 130

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----- 182
            ++   A+   SAN  + A  E ++G E  F  +M+++AK+ G++N  + N++GL     
Sbjct: 131 VKELYEAMAIYSANGATIALAEAVAGKEADFVKMMNDQAKEFGLKNYKFVNSTGLTNTDL 190

Query: 183 ---------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRI---ITNHN 228
                     D+    +ARD AIL   L ++FP       I K  F+   +    + N N
Sbjct: 191 KGLHPEGTTPDEENKMSARDVAILAQRLMQDFPNVLDTAKIPKKVFQKDGKYPIQMDNWN 250

Query: 229 KLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
            +L  +      +DG+KTG+T  +G+    +       +++VV+   ++  R
Sbjct: 251 WMLKGLVKQYEGVDGLKTGHTPEAGYCFTGTAEKNGMRLISVVINTSSNTSR 302


>gi|326407895|gb|ADZ64966.1| D-alanyl-D-alanine carboxypeptidase [Lactococcus lactis subsp.
           lactis CV56]
          Length = 435

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 104/223 (46%), Gaps = 38/223 (17%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGIL 133
           AS+TK++T Y++++ +   KL  NT++P+S  A       N S + L +   +T +  + 
Sbjct: 65  ASITKLLTAYLVYKNVAENKLTWNTKVPISDYAYELTQNSNASNIPLVQNGQYTVKDLLN 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN------- 186
           AL+  SAN  + A  E I+GSE KF  +M+ + K  G+ ++   NASGL + +       
Sbjct: 125 ALLLPSANSAAVALAEKIAGSEPKFVDMMTKQMKDWGITDSHLVNASGLPNDDLNGHIYP 184

Query: 187 -------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----IITNHNKLLNKM 234
                     +A+  A L   L ++FP+  +     +  +         +TN N++L+  
Sbjct: 185 GSGASATNTMSAKAVATLSYHLIQDFPEILQITKKTEIPFDTGNEAKMTLTNTNQMLSGF 244

Query: 235 H----NIDGIKT-----------GYTRNSGFNIVTSLRYKDDP 262
                 +DG+KT           G T  +GF I+T +    DP
Sbjct: 245 STSRTGVDGLKTGSTSFQIDCFAGTTNQNGFRIITVVLEATDP 287


>gi|260892761|ref|YP_003238858.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ammonifex degensii KC4]
 gi|260864902|gb|ACX52008.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ammonifex degensii KC4]
          Length = 374

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 125/264 (47%), Gaps = 25/264 (9%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF----KQDEPRYPASLTKMMTLYII 89
              L ++ ++ AS     P+ ++    + + Q   F       E R PASLTK+MT  + 
Sbjct: 17  CWLLGVVQVAWAS----PPEVTAEAAALMERQSGLFYYEKNATERRAPASLTKVMTCILA 72

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLY-LKEKTYFTTEQGILALITRSANDVSTAFG 148
            E    +++     + VS+ AA  +   +  L+        + I A +  SAND + A  
Sbjct: 73  LEMADPEEV-----VTVSRRAAAISMGLVIDLRPGEQIKLRELIKAALIHSANDATVAIA 127

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E ++G    F   M+ KA  +G+++T + N +G       +TA+D A L     +N P +
Sbjct: 128 EAVAGDHDTFVRWMNAKALLLGLEDTHFVNTNGYSHPEHWSTAKDLARLTRYALQN-PTF 186

Query: 209 YKYFSIRK--FRY----RNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDD 261
               + R+   R+    R   I+N N+LL+  +  + G+KTG T+ +G  ++ S R  + 
Sbjct: 187 ASLVATRQAVVRWEKPQRELPISNTNRLLHGGYPQVTGVKTGTTQAAGQCLIASARSGEQ 246

Query: 262 PIVAVVMGMPTSQERDQKALELIT 285
             VAVV+    S+ R + A+ L++
Sbjct: 247 EFVAVVL---KSKNRYRDAVALLS 267


>gi|257867724|ref|ZP_05647377.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus casseliflavus
           EC30]
 gi|257874051|ref|ZP_05653704.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus casseliflavus
           EC10]
 gi|257801807|gb|EEV30710.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus casseliflavus
           EC30]
 gi|257808215|gb|EEV37037.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus casseliflavus
           EC10]
          Length = 444

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 104/219 (47%), Gaps = 29/219 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGIL 133
           AS+TK+++LY++ E ++   +  +  +P+S  AA    + N S + L +   +T +    
Sbjct: 73  ASITKIISLYLVAEQVEQGTIAWDDPVPISDYAANLSVSPNLSNVPLHQDVTYTVKDLYD 132

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           A   +SAN    A  E I+GSE  F  LM  K +  G+ +    NASGL+          
Sbjct: 133 ASYIQSANAAIVALAELIAGSESAFVDLMQEKVQSWGITDAKIVNASGLNNAYLGENIYP 192

Query: 184 -----DKNQITTARDQAILGILLRKNFPQYYKY--FSIRKF---RYRNRIITNHNKLL-- 231
                D+N++ +A+D A++   L ++FP   +    S ++F    Y    + N N +L  
Sbjct: 193 GSTSTDENEL-SAKDVALIARHLLQDFPDVLEVTSLSTKQFGEGSYSPVEMVNWNWMLPG 251

Query: 232 --NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             N    +DG+KTG T  +G   V +       I+ VV+
Sbjct: 252 FTNTKDGVDGLKTGTTDMAGACFVGTAVKDGQRIITVVL 290


>gi|257886898|ref|ZP_05666551.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
           1,141,733]
 gi|257822952|gb|EEV49884.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
           1,141,733]
          Length = 435

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 29/219 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGIL 133
           AS+TK++ LYI+ + ++  KL  + ++ +S  A     T + S + L ++  +T ++   
Sbjct: 64  ASITKIIGLYIVLDQVKEGKLSWDDKVSISDYAENLSVTPDLSNVPLHKENTYTVKELFD 123

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----------- 182
           + I +SAN    A  E ISGSE KF   M  + K  G+++    NASGL           
Sbjct: 124 SAIIQSANASMVALAEKISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPE 183

Query: 183 ----HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL-- 231
               +D+NQ+ +A+D AI+   L  +FP+     S     +         + N N +L  
Sbjct: 184 GTGENDENQM-SAQDVAIVARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPG 242

Query: 232 --NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             N    +DG+KTG T  +G   V ++   D  I+ VV+
Sbjct: 243 FVNYKEGVDGLKTGTTELAGACFVGTITKNDQRIITVVL 281


>gi|257876629|ref|ZP_05656282.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus casseliflavus
           EC20]
 gi|257810795|gb|EEV39615.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus casseliflavus
           EC20]
          Length = 444

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 104/219 (47%), Gaps = 29/219 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGIL 133
           AS+TK+++LY++ E ++   +  +  +P+S  AA    + N S + L +   +T +    
Sbjct: 73  ASITKIISLYLVAEQVEQGTIAWDDPVPISDYAANLSVSPNLSNVPLHQDVTYTVKDLYD 132

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           A   +SAN    A  E I+GSE  F  LM  K +  G+ +    NASGL+          
Sbjct: 133 ASYIQSANAAIVALAELIAGSESAFVDLMQEKVQSWGITDAKIVNASGLNNAYLGENIYP 192

Query: 184 -----DKNQITTARDQAILGILLRKNFPQYYKY--FSIRKF---RYRNRIITNHNKLL-- 231
                D+N++ +A+D A++   L ++FP   +    S ++F    Y    + N N +L  
Sbjct: 193 GSTSTDENEL-SAKDVALIARHLLQDFPDVLEVTSLSTKQFGEGSYSPVEMVNWNWMLPG 251

Query: 232 --NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             N    +DG+KTG T  +G   V +       I+ VV+
Sbjct: 252 FTNTKDGVDGLKTGTTDMAGACFVGTAVKDGQRIITVVL 290


>gi|295110604|emb|CBL24557.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162]
          Length = 439

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 65/124 (52%), Gaps = 2/124 (1%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE RYPAS TK+MTL +  E    K +   T+  V     T + S +  +     T +  
Sbjct: 74  DEYRYPASTTKLMTLLVAIENSSPKDVVTFTETGVRDV--TWDSSNINAQLGETMTMKDC 131

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
             A   +SAN+V     E++ G+E  F  +M+ KAKK+G  +T + NASGL D+N  + A
Sbjct: 132 WFAAYIKSANEVCAQIAEYVGGTEANFVEMMNQKAKKLGCTHTHFVNASGLPDENHYSCA 191

Query: 192 RDQA 195
            D A
Sbjct: 192 EDLA 195


>gi|229178819|ref|ZP_04306179.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus 172560W]
 gi|228604584|gb|EEK62045.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus 172560W]
          Length = 416

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 121/243 (49%), Gaps = 30/243 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S    K 
Sbjct: 22  SAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKI 81

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ 
Sbjct: 82  SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEF 141

Query: 170 GMQNTIYKNASG---------------LHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           GM++  + N++G               L +KN++ +ARD AIL   L ++FPQ      I
Sbjct: 142 GMKDYKFVNSTGLTNQDLKGYHLEGTTLDEKNKM-SARDCAILAQRLIQDFPQILNTAKI 200

Query: 215 RKFRYRNR-----IITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            K  ++        + N N +L  +      +DG+KTG T  +G     ++      +++
Sbjct: 201 PKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLIS 260

Query: 266 VVM 268
           VV+
Sbjct: 261 VVI 263


>gi|229190458|ref|ZP_04317457.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus ATCC 10876]
 gi|228593007|gb|EEK50827.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus ATCC 10876]
          Length = 416

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 121/243 (49%), Gaps = 30/243 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S    K 
Sbjct: 22  SAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKI 81

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ 
Sbjct: 82  SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEF 141

Query: 170 GMQNTIYKNASG---------------LHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           GM++  + N++G               L +KN++ +ARD AIL   L ++FPQ      I
Sbjct: 142 GMKDYKFVNSTGLTNQDLKGYHLEGTTLDEKNKM-SARDCAILAQRLIQDFPQILNTAKI 200

Query: 215 RKFRYRNR-----IITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            K  ++        + N N +L  +      +DG+KTG T  +G     ++      +++
Sbjct: 201 PKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLIS 260

Query: 266 VVM 268
           VV+
Sbjct: 261 VVI 263


>gi|213419096|ref|ZP_03352162.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 243

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 70/121 (57%), Gaps = 1/121 (0%)

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
           AK++G+ NT ++   GL    Q +TARD A+LG  L  + P  Y     ++F + N    
Sbjct: 2   AKRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQP 61

Query: 226 NHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N+LL   + ++DG+KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+
Sbjct: 62  NRNRLLWSTNLHVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLL 121

Query: 285 T 285
           T
Sbjct: 122 T 122


>gi|229176613|ref|ZP_04304020.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus 172560W]
 gi|228606860|gb|EEK64274.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus 172560W]
          Length = 415

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 20  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKV 79

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K++
Sbjct: 80  SQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKEL 139

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 140 GLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 199

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 200 KKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 241


>gi|330685765|gb|EGG97400.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus
           epidermidis VCU121]
          Length = 429

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 81/149 (54%), Gaps = 22/149 (14%)

Query: 69  FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKE 122
           + +D+  YPAS+TK+MT+Y+  E ++ KKL LN ++ ++       T    + +KLY  +
Sbjct: 65  YNKDKVWYPASMTKLMTMYLTLEAVKDKKLSLNDEVKMTDREYQMSTLPELSNTKLYPGQ 124

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
           K  +T    +   ++ S+N  +   GE +SG+   F  LM+ KAK++GM++T Y N SG 
Sbjct: 125 K--WTISDLLQITVSNSSNAAALILGEQVSGNVNDFTDLMNKKAKELGMKDTHYVNPSGA 182

Query: 183 HD--------------KNQITTARDQAIL 197
            +              +N  T+ARD AIL
Sbjct: 183 ENTRLKSFAPSKYKKTENTTTSARDYAIL 211


>gi|228937316|ref|ZP_04099964.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228950561|ref|ZP_04112697.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228970202|ref|ZP_04130863.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228976772|ref|ZP_04137186.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis Bt407]
 gi|229067777|ref|ZP_04201096.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus F65185]
 gi|229077286|ref|ZP_04209969.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock4-2]
 gi|229188298|ref|ZP_04315349.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus ATCC 10876]
 gi|228595166|gb|EEK52934.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus ATCC 10876]
 gi|228706009|gb|EEL58314.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock4-2]
 gi|228715330|gb|EEL67187.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus F65185]
 gi|228782934|gb|EEM31098.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis Bt407]
 gi|228789503|gb|EEM37421.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228809104|gb|EEM55587.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228822341|gb|EEM68321.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|326937806|gb|AEA13702.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 415

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 20  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKV 79

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K++
Sbjct: 80  SQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKEL 139

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 140 GLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 199

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 200 KKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 241


>gi|323126583|gb|ADX23880.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 412

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 118/246 (47%), Gaps = 26/246 (10%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTA 110
           +I ++V+  ++   K+ +   P AS+TK++T Y++++ + + KL   + + +S    +  
Sbjct: 32  AIAVEVDSGKILYEKEADKAVPVASITKLLTTYLVYKEIANGKLEWGSSVTISNYPYELT 91

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
              + S + L  + Y T ++ + ALI  +AN  + A  E I G+E KF   MS + K+ G
Sbjct: 92  TNYSISNVPLDARKY-TVKELLKALIVTNANSPAIALAEKIGGTEPKFVDKMSQQLKEWG 150

Query: 171 MQNTIYKNASGL---------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           + +    NA+GL                D+N + +ARD AI+   L   FP+  K  S  
Sbjct: 151 ISDAKLVNATGLPNHFLGENKYPKTEDEDEN-LFSARDLAIIARHLLTEFPEVLKITSKP 209

Query: 216 KFRYRNRIITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
              +  + I ++N +L  M      +DG+  GY+   G + V +       ++ VV+   
Sbjct: 210 SANFAGQTIYSYNYMLKDMPYYRDGVDGLFVGYSEKGGASFVATSVENRMRVITVVLNAD 269

Query: 272 TSQERD 277
            +QE +
Sbjct: 270 QAQEDE 275


>gi|228952739|ref|ZP_04114812.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228806910|gb|EEM53456.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
          Length = 416

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 121/243 (49%), Gaps = 30/243 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S    K 
Sbjct: 22  SAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKI 81

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ 
Sbjct: 82  SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEF 141

Query: 170 GMQNTIYKNASG---------------LHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           GM++  + N++G               L +KN++ +ARD AIL   L ++FPQ      I
Sbjct: 142 GMKDYKFVNSTGLTNQDLKGYHLEGTTLDEKNKM-SARDCAILAQRLIQDFPQILNTAKI 200

Query: 215 RKFRYRNR-----IITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            K  ++        + N N +L  +      +DG+KTG T  +G     ++      +++
Sbjct: 201 PKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLIS 260

Query: 266 VVM 268
           VV+
Sbjct: 261 VVI 263


>gi|257890484|ref|ZP_05670137.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
           1,231,410]
 gi|260558933|ref|ZP_05831120.1| predicted protein [Enterococcus faecium C68]
 gi|293559772|ref|ZP_06676292.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1162]
 gi|314950187|ref|ZP_07853472.1| beta-lactamase [Enterococcus faecium TX0082]
 gi|257826844|gb|EEV53470.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
           1,231,410]
 gi|260075041|gb|EEW63356.1| predicted protein [Enterococcus faecium C68]
 gi|291606255|gb|EFF35669.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1162]
 gi|313643497|gb|EFS08077.1| beta-lactamase [Enterococcus faecium TX0082]
          Length = 435

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 29/219 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGIL 133
           AS+TK++ LYI+ + ++  KL  + ++ +S  A     T + S + L ++  +T ++   
Sbjct: 64  ASITKIIGLYIVLDQVKEGKLSWDDKVSISDYAENLSVTPDLSNVPLHKENTYTVKELFD 123

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----------- 182
           + I +SAN    A  E ISGSE KF   M  + K  G+++    NASGL           
Sbjct: 124 SAIIQSANASMVALAEKISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPE 183

Query: 183 ----HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL-- 231
               +D+NQ+ +A+D AI+   L  +FP+     S     +         + N N +L  
Sbjct: 184 GTGENDENQM-SAQDVAIVARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPG 242

Query: 232 --NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             N    +DG+KTG T  +G   V ++   D  I+ VV+
Sbjct: 243 FVNYKEGVDGLKTGTTELAGACFVGTITKNDQRIITVVL 281


>gi|251780348|ref|ZP_04823268.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084663|gb|EES50553.1| putative D-alanyl-D-alanine carboxypeptidase DacB [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 289

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 107/208 (51%), Gaps = 14/208 (6%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK++T  I  E     +  L+ ++ +SK AA+   SK+  K       ++    L+ 
Sbjct: 67  ASTTKILTAIIAIE-----QGDLDKKVVISKNAASIRGSKVGYKAGEEVGLKELAFGLMF 121

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND + A  E + GS + FA +M++ A  IG+ ++ +++  GL   +  ++A D A+L
Sbjct: 122 KSGNDAAIAIAETLGGSVEGFAQIMNHYATGIGIIDSHFESPHGLDSNSHYSSAYDLALL 181

Query: 198 ---GI---LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
              G+   L R+      K  S  K+ +  R   N NK+L  +   +G+KTGYT  +G  
Sbjct: 182 TAKGMEFDLFREIVGS--KQISKEKYNF-TRDYNNINKILWLIPEANGVKTGYTGGAGKC 238

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           +V+S+ ++   I+ VV+  P    + QK
Sbjct: 239 LVSSVNHQGKDIIIVVLNCPDRWAQTQK 266


>gi|188588227|ref|YP_001921472.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498508|gb|ACD51644.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 289

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 107/208 (51%), Gaps = 14/208 (6%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK++T  I  E     +  L+ ++ +SK AA+   SK+  K       ++    L+ 
Sbjct: 67  ASTTKILTAIIAIE-----QGDLDKKVVISKNAASIRGSKVGYKAGEEVGLKELTFGLMF 121

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND + A  E + GS + FA +M++ A  IG+ ++ +++  GL   +  ++A D A+L
Sbjct: 122 KSGNDAAIAIAETLGGSVEGFAQIMNHYATGIGIIDSHFESPHGLDSNSHYSSAYDLALL 181

Query: 198 ---GI---LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
              G+   L R+      K  S  K+ +  R   N NK+L  +   +G+KTGYT  +G  
Sbjct: 182 TAKGMEFDLFREIVGS--KQISKEKYNF-TRDYNNINKILWLIPEANGVKTGYTGGAGKC 238

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           +V+S+ ++   I+ VV+  P    + QK
Sbjct: 239 LVSSVNHQGKDIIIVVLNCPDRWAQTQK 266


>gi|229051351|ref|ZP_04194858.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH676]
 gi|228722004|gb|EEL73442.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH676]
          Length = 442

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 121/243 (49%), Gaps = 30/243 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S    K 
Sbjct: 48  SAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKI 107

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ 
Sbjct: 108 SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEF 167

Query: 170 GMQNTIYKNASG---------------LHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           GM++  + N++G               L +KN++ +ARD AIL   L ++FPQ      I
Sbjct: 168 GMKDYKFVNSTGLTNQDLKGYHPEGTTLDEKNKM-SARDCAILAQRLIQDFPQILNTAKI 226

Query: 215 RKFRYRNR-----IITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            K  ++        + N N +L  +      +DG+KTG T  +G     ++      +++
Sbjct: 227 PKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLIS 286

Query: 266 VVM 268
           VV+
Sbjct: 287 VVI 289


>gi|227551939|ref|ZP_03981988.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecium
           TX1330]
 gi|257895469|ref|ZP_05675122.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium Com12]
 gi|293378334|ref|ZP_06624503.1| beta-lactamase [Enterococcus faecium PC4.1]
 gi|227178940|gb|EEI59912.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecium
           TX1330]
 gi|257832034|gb|EEV58455.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium Com12]
 gi|292643198|gb|EFF61339.1| beta-lactamase [Enterococcus faecium PC4.1]
          Length = 435

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 29/219 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGIL 133
           AS+TK++ LYI+ + ++  KL  + ++ +S  A     T + S + L ++  +T ++   
Sbjct: 64  ASITKIIGLYIVLDQVKEGKLSWDDKVSISDYAENLSVTPDLSNVPLHKENTYTVKELFD 123

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----------- 182
           + I +SAN    A  E ISGSE KF   M  + K  G+++    NASGL           
Sbjct: 124 SAIIQSANASMVALAEKISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPE 183

Query: 183 ----HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL-- 231
               +D+NQ+ +A+D AI+   L  +FP+     S     +         + N N +L  
Sbjct: 184 GTGENDENQM-SAQDVAIVARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPG 242

Query: 232 --NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             N    +DG+KTG T  +G   V ++   D  I+ VV+
Sbjct: 243 FVNYKEGVDGLKTGTTELAGACFVGTITKNDQRIITVVL 281


>gi|207582659|gb|ACI24891.1| D-alanyl-D-alanine carboxypeptidase-like protein [uncultured
           bacterium]
          Length = 179

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 9/176 (5%)

Query: 27  NIQLMGKILFLSIIMI----SMASELHAKPKY----SSIVIDVNK-NQMTGFKQDEPRYP 77
           NI    K L L + +I    + A E+   P      S +++D +  N +     D+   P
Sbjct: 2   NITTFAKRLCLLVPLIVTPAAWAVEMMPSPPQLAAKSYVLMDASSGNVLVENNGDQRLPP 61

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT YI    ++  ++  N  + VS+ A     S++++K  T  +    +  +I 
Sbjct: 62  ASLTKLMTAYIATLEIRRGQIGENDPVTVSENAWRTGGSRMFIKVGTQVSVSDLLHGIII 121

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           +S ND S A  E I+GSE  FA +M+  A ++GM N+ + N +GL + +  ++A +
Sbjct: 122 QSGNDASVALSEHIAGSEDAFADMMNKTAGELGMSNSHFMNPTGLPNPDHYSSAPE 177


>gi|206971703|ref|ZP_03232653.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus AH1134]
 gi|206733688|gb|EDZ50860.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus AH1134]
          Length = 437

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 129/268 (48%), Gaps = 35/268 (13%)

Query: 35  LFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           +F S+++    +     P       S+I+I+ N  ++   K  DE    AS+TKMM+ Y+
Sbjct: 18  IFCSMVVTIGKAAAETDPAIDVEAGSAILIEANSGKILYEKNADESLAIASMTKMMSEYL 77

Query: 89  IFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           + E +   KL  + ++ +S    K +  ++ S + L+    +T ++   A+   SAN  +
Sbjct: 78  VHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGAT 137

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG---------------LHDKNQIT 189
            A  E I+G E  F  +M++K+K+ GM++  + N++G               L +KN++ 
Sbjct: 138 IALVEQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLEGTTLDEKNKM- 196

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----IITNHNKLLNKM----HNIDGI 240
           +ARD AIL   L ++FPQ      I K  ++        + N N +L  +      +DG+
Sbjct: 197 SARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGL 256

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G     ++      +++VV+
Sbjct: 257 KTGTTPEAGDCFTGTVERNGMRLISVVI 284


>gi|293568621|ref|ZP_06679936.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1071]
 gi|291588581|gb|EFF20414.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1071]
          Length = 435

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 29/219 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGIL 133
           AS+TK++ LYI+ + ++  KL  + ++ +S  A     T + S + L ++  +T ++   
Sbjct: 64  ASITKIIGLYIVLDQVKEGKLSWDDKVSISDYAENLSVTPDLSNVPLHKENTYTVKELFD 123

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----------- 182
           + I +SAN    A  E ISGSE KF   M  + K  G+++    NASGL           
Sbjct: 124 SAIIQSANASMVALAEKISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPE 183

Query: 183 ----HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL-- 231
               +D+NQ+ +A+D AI+   L  +FP+     S     +         + N N +L  
Sbjct: 184 GTGENDENQM-SAQDVAIVARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPG 242

Query: 232 --NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             N    +DG+KTG T  +G   V ++   D  I+ VV+
Sbjct: 243 FVNYKEGVDGLKTGTTELAGACFVGTITKNDQRIITVVL 281


>gi|238917952|ref|YP_002931469.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium eligens ATCC
           27750]
 gi|238873312|gb|ACR73022.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium eligens ATCC
           27750]
          Length = 464

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 12/150 (8%)

Query: 55  SSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S I++D +   +  F+++  E  YPAS TK++T  +  E       +++  +  S+ AAT
Sbjct: 62  SCILVDADTGSIL-FERNSHEKCYPASTTKILTGLLTIE-----NCNMDDVVTFSQAAAT 115

Query: 113 Q----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                  + L  K    FT  Q +  L+  SAN+++ A GE ++GS   F  +M+ KAK+
Sbjct: 116 SINIYEDANLGCKVGEQFTVNQLLHGLLLYSANEMAYALGEHVAGSIDAFVDMMNAKAKE 175

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILG 198
           +G  NT + NASGL++ N  TTA D A++ 
Sbjct: 176 LGALNTHFANASGLYNTNHYTTAYDMAMIA 205


>gi|323704241|ref|ZP_08115820.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323536307|gb|EGB26079.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 457

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 105/231 (45%), Gaps = 26/231 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++++D    Q+   K    R YPAS TK++T  I  E     K  LN  + V+      
Sbjct: 34  TAVLMDFTTGQVLYDKNMNQRMYPASTTKILTAIIAIE-----KGKLNDVVTVNDDVKNI 88

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           + + +YL      T EQ + A++  SAND + A  + I GS + FA LM+ KAK+IG ++
Sbjct: 89  DGNSIYLVPGEKLTLEQLLYAMLLESANDAAIAVADHIGGSIQGFANLMNEKAKEIGAKD 148

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKN-------------FPQYYKYFSIRKFRYR 220
           + + N +GL +    +T  D A++     +N              P   K+   R     
Sbjct: 149 SHFVNPNGLPNTEHYSTPYDMALIARYAMRNATFRKIVSTIHYQIPPTNKFDKPRDLWIS 208

Query: 221 NRIITNHNKLLNKMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           NR+I          H    DG+KTGYT  +    V S       +++V+MG
Sbjct: 209 NRLIKP-----TSFHYDGADGVKTGYTIAANQVFVGSATRNGHRLISVIMG 254


>gi|163938022|ref|YP_001642906.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
 gi|163860219|gb|ABY41278.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
          Length = 435

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 115/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 40  AAILVEANSGKIVYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKI 99

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++KAK++
Sbjct: 100 SQDASLSNVALENGGLYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKAKEL 159

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 160 GLKNYKFVNSTGLTNKDLKGMHPEGTTPDEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 219

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 220 KKVFRPEKEKFGMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 261


>gi|119357228|ref|YP_911872.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354577|gb|ABL65448.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 291

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 101/201 (50%), Gaps = 15/201 (7%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK++T  I  E  Q     L+ ++ ++K A    PSK   K          + A +
Sbjct: 71  PASLTKILTSIIALESGQ-----LDDEVVITKEATMVEPSKAGFKPGERILLRDLVKAAM 125

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK---NQITTARD 193
             S+ND + A G  + GS  +F   M+ KA+ IGM+++++ N +G   +     ++TA D
Sbjct: 126 VSSSNDAAFAIGIHLEGSVPRFVRKMNRKARDIGMRHSVFTNPAGFDKRVYAGNVSTAED 185

Query: 194 QAILGILLRKNFPQYYKYFSIRKF----RYRNRI--ITNHNKLLNKMHNIDGIKTGYTRN 247
              L     +N  ++ +  S+       R  N+I  +  HNKLL K     GIKTG+TR+
Sbjct: 186 LVKLTEYAIRN-RKFNEIASLESVLVTERSSNKIYLLKTHNKLLGKYPYAVGIKTGFTRS 244

Query: 248 SGFNIVTSLRYKDDPIVAVVM 268
           +G  ++   + ++  ++ V++
Sbjct: 245 AGKCLIARAKKENKDMLLVLL 265


>gi|254479748|ref|ZP_05093030.1| Penicillin-binding protein 5, C-terminal domain [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034315|gb|EEB75107.1| Penicillin-binding protein 5, C-terminal domain [Carboxydibrachium
           pacificum DSM 12653]
          Length = 334

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 10/162 (6%)

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           ++L      T EQ + AL+  SAND + A  E+I GS + FA +M+ KA++IG  N+ + 
Sbjct: 12  IFLSPGEQLTLEQLLYALMLESANDAAIAIAEYIGGSVENFAKMMNEKAREIGAYNSHFV 71

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFP-------QYYKYFSIRKF-RYRNRIITNHNK 229
           N +GL D+N  +T  D A +     +N          +Y+     KF + R+  I+N   
Sbjct: 72  NPNGLPDENHYSTPYDMAQIARYAMQNAEFRKIVSTLHYQIPPTNKFDKPRDLWISNRLL 131

Query: 230 LLNKMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
             ++ H    DG+KTGYT  +G  +V S       +++V+MG
Sbjct: 132 KPSRFHYEGADGVKTGYTVAAGQVLVASATRDGHRLISVIMG 173


>gi|237734723|ref|ZP_04565204.1| D-alanyl-D-alanine carboxypeptidase [Mollicutes bacterium D7]
 gi|229382051|gb|EEO32142.1| D-alanyl-D-alanine carboxypeptidase [Coprobacillus sp. D7]
          Length = 352

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 102/204 (50%), Gaps = 10/204 (4%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQS-KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
           DE  YPAS+TK+MT+ +  E +   KK  + TQ  +     T   S  +   +T  T E 
Sbjct: 55  DERMYPASMTKVMTVILALELMDDMKKTTVITQSDIDTVWETGASSANFEVGET-VTYED 113

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +   I  S  D + A    + GS++ F   M+  A+K+ +++T + N +G+HD+N  TT
Sbjct: 114 LLYGAILPSGADATRALANNLCGSQEAFVDKMNELAQKLNLKDTHFVNTTGIHDENHYTT 173

Query: 191 ARDQAILGILLRKN------FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGY 244
             D A++     +N      + Q YK  S    ++ N+ + N  +    + +I G K+GY
Sbjct: 174 VHDMALIVQYAIQNEDFKNIYAQRYKTSSNGLHQWVNKSMYNAKRAKINVDDILGCKSGY 233

Query: 245 TRNSGFNIVTSL-RYKDDPIVAVV 267
           T N   + ++SL R  D+ I+ +V
Sbjct: 234 T-NEAKSCLSSLNRVNDNEIITIV 256


>gi|293553827|ref|ZP_06674442.1| D-alanyl-D-alanine carboxypeptidase DacA [Enterococcus faecium
           E1039]
 gi|291602033|gb|EFF32270.1| D-alanyl-D-alanine carboxypeptidase DacA [Enterococcus faecium
           E1039]
          Length = 435

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 29/219 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGIL 133
           AS+TK++ LYI+ + ++  KL  + ++ +S  A     T + S + L ++  +T ++   
Sbjct: 64  ASITKIIGLYIVLDQVKEGKLSWDDKVSISDYAENLSITPDLSNVPLHKENTYTVKELFD 123

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----------- 182
           + I +SAN    A  E ISGSE KF   M  + K  G+++    NASGL           
Sbjct: 124 SAIIQSANASMVALAEKISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPE 183

Query: 183 ----HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL-- 231
               +D+NQ+ +A+D AI+   L  +FP+     S     +         + N N +L  
Sbjct: 184 GTGENDENQM-SAQDVAIVARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPG 242

Query: 232 --NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             N    +DG+KTG T  +G   V ++   D  I+ VV+
Sbjct: 243 FVNYKEGVDGLKTGTTELAGACFVGTITKNDQRIITVVL 281


>gi|291545877|emb|CBL18985.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. SR1/5]
          Length = 277

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 113/227 (49%), Gaps = 17/227 (7%)

Query: 55  SSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D  N   + G +  + R  AS TK+MT  +  E  +      +  + VS  AA+Q
Sbjct: 31  SAVLMDGENGRVLYGKEAYKGRPNASTTKVMTCILALELAKG-----DDYVQVSGNAASQ 85

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             ++L ++E   F  E  + +L+ +S ND + A  E I GS + FA  M+ KAK++G ++
Sbjct: 86  PQTRLGMREGQQFYLEDLLYSLMLKSHNDSAVAIAEHIGGSVEGFAEKMNEKAKELGCKD 145

Query: 174 TIYKNASGL--HDKNQI--TTARDQAILGILLRKNFPQYYKYFSIRKFRY------RNRI 223
           T +   +GL   D+  I  TTARD A++     KN   +      R + +      ++  
Sbjct: 146 THFVTPNGLDGEDEGGIHHTTARDLALIMAYAIKN-ATFVHITQTRDYTFTDISGKKHYS 204

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           + N N  L+    +   KTG+T N+G+  V ++R  +   +  ++G 
Sbjct: 205 VHNTNAFLDMETGVISGKTGFTGNAGYCYVCAVRQDERLFIVALLGC 251


>gi|228989223|ref|ZP_04149217.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus pseudomycoides DSM 12442]
 gi|228770498|gb|EEM19068.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus pseudomycoides DSM 12442]
          Length = 444

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 27/205 (13%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           DE    AS+TKMM+ Y++ E +   KL  + ++ VS+ A      ++ S + L+    +T
Sbjct: 66  DELLAIASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAHMISQDRSLSNVPLENGGSYT 125

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----- 182
            ++   A+   SAN  + A  E I+G E  F  +M++KAK++G++N  + N++GL     
Sbjct: 126 VKELYEAMAIYSANGATIALAEAIAGKEADFVKMMNDKAKELGLKNYKFVNSTGLTNHDL 185

Query: 183 ---------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRI---ITNHN 228
                     D+    +ARD AIL   L ++FP+  +   I K  F+   +    + N N
Sbjct: 186 KGQQPEGTTPDEENKMSARDCAILAQHLIQDFPKVLETAKIPKKVFQEGGKYPVKMDNWN 245

Query: 229 KLLNKM----HNIDGIKTGYTRNSG 249
            +L  +      +DG+KTG T  +G
Sbjct: 246 WMLKGLVKEYEGVDGLKTGSTPEAG 270


>gi|255281347|ref|ZP_05345902.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
           DSM 14469]
 gi|255268304|gb|EET61509.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
           DSM 14469]
          Length = 398

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 109/241 (45%), Gaps = 26/241 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
            ++++D    +M   K    + YPASLTK+MT  ++ EY     L     IP      T 
Sbjct: 151 CAVLLDAGTGEMLAEKNGSAQMYPASLTKIMTALLLVEYC--GNLDGTAWIP------TD 202

Query: 114 NPSKLYLKEKT---YFTTEQGIL-----ALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
              +LY +  +   +   E+  L      ++  S  +       +I+GSE+ F  +M+ +
Sbjct: 203 IYDQLYAEGASVAGFLPGEEVTLRDLLYGILLPSGAECCLTAARYIAGSEESFVQIMNQR 262

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAIL--GILLRKNFPQYY--KYFSIRKFRYRN 221
           A ++GM NT + N++GL D    ++A D A L    L   +F + +  +Y+ ++  +   
Sbjct: 263 AAELGMTNTHFTNSTGLQDAQHYSSAEDIAALLQYALQNASFREAFTSEYYYVQPTQEHP 322

Query: 222 RIITNHNKLLNKMH-----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
              T  + L ++        I G KTGYT+ +G  + + LR      + V  G P S E 
Sbjct: 323 EGFTFWSTLFSQAQASGDDRILGGKTGYTQEAGLCLASLLRVGGREYILVTAGAPGSHET 382

Query: 277 D 277
           +
Sbjct: 383 E 383


>gi|228995406|ref|ZP_04155077.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus mycoides Rock3-17]
 gi|228764332|gb|EEM13208.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus mycoides Rock3-17]
          Length = 444

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 27/205 (13%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           DE    AS+TKMM+ Y++ E +   KL  + ++ VS+ A      ++ S + L+    +T
Sbjct: 66  DELLAIASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAHMISQDRSLSNVPLENGGSYT 125

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----- 182
            ++   A+   SAN  + A  E I+G E  F  +M++KAK++G++N  + N++GL     
Sbjct: 126 VKELYEAMAIYSANGATIALAEAIAGKEADFVKMMNDKAKELGLKNYKFVNSTGLTNHDL 185

Query: 183 ---------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRI---ITNHN 228
                     D+    +ARD AIL   L ++FP+  +   I K  F+   +    + N N
Sbjct: 186 KGQQPEGTTPDEENKMSARDCAILAQHLIQDFPKVLETAKIPKKVFQEGGKYPVKMDNWN 245

Query: 229 KLLNKM----HNIDGIKTGYTRNSG 249
            +L  +      +DG+KTG T  +G
Sbjct: 246 WMLKGLVKEYEGVDGLKTGSTPEAG 270


>gi|171910636|ref|ZP_02926106.1| D-alanyl-D-alanine carboxypeptidase [Verrucomicrobium spinosum DSM
           4136]
          Length = 373

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 101/205 (49%), Gaps = 12/205 (5%)

Query: 57  IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           IV+D    ++   K  + + P AS  K++T  ++ E       +L+  + V        P
Sbjct: 141 IVVDAGTGEVLFEKNADRKAPVASTQKLLTALLLTE-----DGNLDQILTVEPDDTKCAP 195

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
            +L +K    +   Q + AL+ +S+ND++ A     +G+  +F   M+ +A ++GM++T 
Sbjct: 196 VRLGIKAGEQYPRRQLLTALLVKSSNDIAQALARDNAGTMDEFVKKMNARAAELGMKDTR 255

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKL 230
           + N  GL    Q +TARD A + + +    P   +  S + F ++        + N N++
Sbjct: 256 FLNPHGLPADGQYSTARDMARVALTV-DAVPDIRRMISTKSFVFKKNDGSWINLENTNRV 314

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTS 255
           L      DG+KTGY + +G+ +++S
Sbjct: 315 LRNYAFCDGMKTGYAQAAGYCLISS 339


>gi|42518607|ref|NP_964537.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus johnsonii NCC
           533]
 gi|41582892|gb|AAS08503.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus johnsonii NCC
           533]
          Length = 308

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 106/220 (48%), Gaps = 21/220 (9%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT--QNP--SKLYLKEKTYFTTEQGIL 133
           AS+TK++T+Y+  + ++ KK+  +T +  ++       NP  + + L+    +T  +   
Sbjct: 76  ASMTKLLTVYLTLQAIKEKKISWDTTVTPTQEIVDLGSNPDYASVPLRLGQKYTVRELYD 135

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ----IT 189
           A + +SAN+ +      +SGSE  F   M  +A+K  + N  +    GL +K +    +T
Sbjct: 136 AALIKSANNAARLLAIAVSGSETNFLNQMRQQARKWKLNNAKFVTVDGLPEKKKNFLGMT 195

Query: 190 T-------ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH------N 236
           T       A D AI+   L  N+P+      + +  ++N ++TN NK+LN +        
Sbjct: 196 TTVENKMSANDMAIVARKLITNYPEILNTTKLARAYFQNTLMTNSNKMLNGLSYYDSTFP 255

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           +DG+KTG T  +G     ++      ++ V++G     ER
Sbjct: 256 VDGLKTGTTDGAGSCFTCTVNKNGKRVITVILGAENDNER 295


>gi|324325585|gb|ADY20845.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 374

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K+     ++ VS  A     S +YLK      
Sbjct: 48  GKAEHEPQKIASITKIMTALLAAESGKMKE-----KVLVSNEAVRVEGSAIYLKAGQKVK 102

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 103 LEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGS 162

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 163 HYSSAYDMALLTRYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 221

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 222 FTKKAGRTLVTTA--SKDGLDLIVVTLSASSDWDD 254


>gi|229165003|ref|ZP_04292801.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH621]
 gi|228618455|gb|EEK75482.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH621]
          Length = 443

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 115/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 48  AAILVEANSGKIVYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKI 107

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++KAK++
Sbjct: 108 SQDASLSNVALENGGLYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKAKEL 167

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 168 GLKNYKFVNSTGLTNKDLKGMHPEGTTPDEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 227

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 228 KKVFRPEKEKFGMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 269


>gi|167755756|ref|ZP_02427883.1| hypothetical protein CLORAM_01271 [Clostridium ramosum DSM 1402]
 gi|167704695|gb|EDS19274.1| hypothetical protein CLORAM_01271 [Clostridium ramosum DSM 1402]
          Length = 411

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 102/204 (50%), Gaps = 10/204 (4%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQS-KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
           DE  YPAS+TK+MT+ +  E +   KK  + TQ  +     T   S  +   +T  T E 
Sbjct: 55  DERMYPASMTKVMTVILALELMDDMKKTTVITQSDIDTVWETGASSANFEVGET-VTYED 113

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +   I  S  D + A    + GS++ F   M+  A+K+ +++T + N +G+HD+N  TT
Sbjct: 114 LLYGAILPSGADATRALANNLCGSQEAFVDKMNELAQKLNLKDTHFVNTTGIHDENHYTT 173

Query: 191 ARDQAILGILLRKN------FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGY 244
             D A++     +N      + Q YK  S    ++ N+ + N  +    + +I G K+GY
Sbjct: 174 VHDMALIVQYAIQNEDFKNIYAQRYKTSSNGLHQWVNKSMYNAKRAKINVDDILGCKSGY 233

Query: 245 TRNSGFNIVTSL-RYKDDPIVAVV 267
           T N   + ++SL R  D+ I+ +V
Sbjct: 234 T-NEAKSCLSSLNRVNDNEIITIV 256


>gi|153810801|ref|ZP_01963469.1| hypothetical protein RUMOBE_01185 [Ruminococcus obeum ATCC 29174]
 gi|149833197|gb|EDM88279.1| hypothetical protein RUMOBE_01185 [Ruminococcus obeum ATCC 29174]
          Length = 393

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 108/228 (47%), Gaps = 27/228 (11%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           PR  AS TK+MT  +  E  +         + VS  A +Q   +L L     +  E  + 
Sbjct: 57  PRPNASTTKVMTCILALENGKGDDY-----VKVSANAVSQPEVRLGLSIGEQYYLEDLLY 111

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN----QIT 189
           +L+ +S ND + A  E I GS   F+ +M+ KAK+IG +NT +   +GL  +N      T
Sbjct: 112 SLMLQSHNDSAVAIAECIGGSVDNFSAMMNAKAKEIGCKNTHFVTPNGLDAENSGGTHHT 171

Query: 190 TARDQAIL-------GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI-- 240
           TA D A++        + L+    + Y +  + K R+ +  + N N LL   H  DG+  
Sbjct: 172 TAEDLALIMRYAIHNDVFLKITQTEEYSFSDLSKKRHFS--VHNTNALL---HMTDGVLA 226

Query: 241 -KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK---ALELI 284
            KTGYT ++G+  V + +  +   +  ++G      ++ K    LEL+
Sbjct: 227 GKTGYTGDAGYCYVCACQKDNKTFIIALLGAGWPDHKNYKWHDTLELL 274


>gi|228957844|ref|ZP_04119584.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228801760|gb|EEM48637.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 363

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 95/192 (49%), Gaps = 10/192 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + KK+     + VS  A     S +YLK      
Sbjct: 37  GKAEHEPQKIASITKIMTALLAAESGKMKKM-----VSVSNEAVRVEGSAIYLKPGQKVK 91

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS   F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 92  LEDLVYGLMLRSGNDAAQVIAESVGGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGS 151

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 152 HYSSAYDMALLTKYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 210

Query: 244 YTRNSGFNIVTS 255
           +T+ +G  +VT+
Sbjct: 211 FTKKAGRTLVTT 222


>gi|229003020|ref|ZP_04160878.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus mycoides Rock1-4]
 gi|228758220|gb|EEM07407.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus mycoides Rock1-4]
          Length = 444

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 27/205 (13%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           DE    AS+TKMM+ Y++ E +   KL  + ++ VS+ A      ++ S + L+    +T
Sbjct: 66  DELLAIASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAHMISQDRSLSNVPLENGGSYT 125

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----- 182
            ++   A+   SAN  + A  E I+G E  F  +M++KAK++G++N  + N++GL     
Sbjct: 126 VKELYEAMAIYSANGATIALAEAIAGKEADFVKMMNDKAKELGLKNYKFVNSTGLTNHDL 185

Query: 183 ---------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRI---ITNHN 228
                     D+    +ARD AIL   L ++FP+  +   I K  F+   +    + N N
Sbjct: 186 KGQQPEGTTPDEENKMSARDCAILAQHLIQDFPKVLETAKIPKKVFQEGGKYPVKMDNWN 245

Query: 229 KLLNKM----HNIDGIKTGYTRNSG 249
            +L  +      +DG+KTG T  +G
Sbjct: 246 WMLKGLVKEYEGVDGLKTGSTPEAG 270


>gi|254556248|ref|YP_003062665.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           JDM1]
 gi|300768351|ref|ZP_07078254.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|254045175|gb|ACT61968.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           JDM1]
 gi|300494078|gb|EFK29243.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 412

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 116/260 (44%), Gaps = 26/260 (10%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
            LS  + + A+   A    ++ V+D    Q+   +  + + P ASL+K+MTLY++   ++
Sbjct: 22  VLSCNVAAHATSSKADEVKAAYVMDAKSGQVVYAQNADQKLPIASLSKLMTLYLVERAIE 81

Query: 95  SKKLHLNTQIP----VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             ++     +P    V K A +   S + +  K  FT  +   A +  S+N  + A GE+
Sbjct: 82  HGQIKWTDAVPIRKNVRKMATSATLSVMPMPAKETFTVRELFAATLVGSSNSGAIALGEY 141

Query: 151 ISGSEKKFAILMSNKAKKI----------GMQNTIYKN----ASGLHDKNQ-ITTARDQA 195
           ++GS  KF  LM+ +A K           G+ NT  KN      G  D++Q + +AR   
Sbjct: 142 VAGSNDKFIKLMNQQASKWHLDASFISASGLDNTDLKNYDLKIKGTSDQDQNLVSARAVT 201

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH------NIDGIKTGYTRNSG 249
            +   L   +P   +  + R  +     +    ++L           +DG+KTGYT  +G
Sbjct: 202 TIAQHLIDAYPDVIQVANQRSVKIHKYTVPTSVEILKGAEYYDPRVPVDGLKTGYTNQAG 261

Query: 250 FNIVTSLRYKDDPIVAVVMG 269
             +V + R     ++A  +G
Sbjct: 262 ACLVATYRQNGHRMIATTLG 281


>gi|18310958|ref|NP_562892.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens str.
           13]
 gi|168212989|ref|ZP_02638614.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens CPE str. F4969]
 gi|182624439|ref|ZP_02952223.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens D str. JGS1721]
 gi|18145640|dbj|BAB81682.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens str.
           13]
 gi|170715489|gb|EDT27671.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens CPE str. F4969]
 gi|177910442|gb|EDT72819.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens D str. JGS1721]
          Length = 423

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 101/209 (48%), Gaps = 22/209 (10%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE  YPAS TK+MT  +  E+        N   P +  A  Q P   Y    ++     G
Sbjct: 60  DEKAYPASTTKVMTSLLFAEHASK-----NDSFPYTADAKAQQP---YTLNNSFGPIPVG 111

Query: 132 --------ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
                   + AL+  SAND +    + ++GS +KF+++M+++ KK+G++NT +   +GLH
Sbjct: 112 EGMNANDLMKALLMFSANDAAAVIADGVAGSAEKFSVMMNDEVKKLGLKNTHFVTPNGLH 171

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIITNHNKLLNKMHNIDG 239
           + +  +TA D A++     KN P   +  +++        +  ++ N NK L    NI G
Sbjct: 172 NDDHYSTAYDLAVILQNAYKN-PWVSETMALKDSDITVNGKKVLLENRNKELGIDGNIGG 230

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            KTG+T  +G  +V+        I+  V+
Sbjct: 231 -KTGFTTPAGRCLVSVYERNGRKIIGAVL 258


>gi|294620209|ref|ZP_06699543.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1679]
 gi|314940169|ref|ZP_07847347.1| beta-lactamase [Enterococcus faecium TX0133a04]
 gi|314942414|ref|ZP_07849257.1| beta-lactamase [Enterococcus faecium TX0133C]
 gi|314952310|ref|ZP_07855321.1| beta-lactamase [Enterococcus faecium TX0133A]
 gi|314994247|ref|ZP_07859550.1| beta-lactamase [Enterococcus faecium TX0133B]
 gi|314997162|ref|ZP_07862148.1| beta-lactamase [Enterococcus faecium TX0133a01]
 gi|291593562|gb|EFF25102.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1679]
 gi|313588736|gb|EFR67581.1| beta-lactamase [Enterococcus faecium TX0133a01]
 gi|313591334|gb|EFR70179.1| beta-lactamase [Enterococcus faecium TX0133B]
 gi|313595569|gb|EFR74414.1| beta-lactamase [Enterococcus faecium TX0133A]
 gi|313598814|gb|EFR77659.1| beta-lactamase [Enterococcus faecium TX0133C]
 gi|313640608|gb|EFS05188.1| beta-lactamase [Enterococcus faecium TX0133a04]
          Length = 435

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 29/219 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGIL 133
           AS+TK++ LYI+ + ++  KL  + ++ +S  A     T + S + L ++  +T ++   
Sbjct: 64  ASITKIIGLYIVLDQVKEGKLSWDDKVSISDYAENLSITPDLSNVPLHKENTYTVKELFD 123

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----------- 182
           + I +SAN    A  E ISGSE KF   M  + K  G+++    NASGL           
Sbjct: 124 SAIIQSANASMVALAEKISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPE 183

Query: 183 ----HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL-- 231
               +D+NQ+ +A+D AI+   L  +FP+     S     +         + N N +L  
Sbjct: 184 GTGENDENQM-SAQDVAIVARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPG 242

Query: 232 --NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             N    +DG+KTG T  +G   V ++   D  I+ VV+
Sbjct: 243 FVNYKEGVDGLKTGTTELAGACFVGTITKNDQRIITVVL 281


>gi|310828855|ref|YP_003961212.1| hypothetical protein ELI_3287 [Eubacterium limosum KIST612]
 gi|308740589|gb|ADO38249.1| hypothetical protein ELI_3287 [Eubacterium limosum KIST612]
          Length = 543

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 120/283 (42%), Gaps = 47/283 (16%)

Query: 28  IQLMGKIL--FLSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMM 84
           I ++G +L  F      + A+     P    +V +VN    +     DE  YPAS TK+M
Sbjct: 6   ISVLGALLLVFGGFGSSAWAAMPSFGPDEGVVVFEVNSGDVLVEQNADERYYPASTTKLM 65

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAA--TQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           T     +Y+ S    LN ++ V           S  +L+    +T EQ + AL+  S ND
Sbjct: 66  TALTALDYVGSS---LNDKVTVGDEVKLIGYESSVAHLEVGEIYTWEQLLYALLLPSGND 122

Query: 143 ----VSTAFGEFISGSEKK--------FAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               ++   G  ISG+EK         F   M+ KA+++G++NT +KNA GLHD +  TT
Sbjct: 123 AANVIAANIGRKISGNEKMDYNQAMSVFVDQMNAKAQQMGLKNTHFKNAHGLHDPDHYTT 182

Query: 191 ARDQAILG-------------------ILLRKNFPQYYKYFSIRKFR----YRNRIITNH 227
             D A++G                   +   +  PQ +K   +  ++    Y   I    
Sbjct: 183 PADMAVIGKTAFTNETISKVEGTKVYEMTTNRGEPQKWKNTDMLLYKDAADYGGTI--EE 240

Query: 228 NKLLNKMHN--IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            +  N  +N    G KTG T  +G   V +    D  IV V+M
Sbjct: 241 GRTDNPYYNAKAKGGKTGNTDEAGRCFVYNAEDGDAKIVGVIM 283


>gi|293571656|ref|ZP_06682677.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E980]
 gi|291608326|gb|EFF37627.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E980]
          Length = 435

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 106/219 (48%), Gaps = 29/219 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGIL 133
           AS+TK++ LYI+ + ++  KL  + ++ +S  A     T + S + L ++  +T ++   
Sbjct: 64  ASITKIIGLYIVLDQVKEGKLSWDDKVSISDYAENLSVTPDLSNVPLHKENTYTVKELFD 123

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----------- 182
           + I +SAN    A  E I+GSE KF   M  + K  G+++ +  NASGL           
Sbjct: 124 SAIIQSANASMVALAEKIAGSEAKFTERMKEQLKDWGIKDAMIVNASGLNNSYLGENRPE 183

Query: 183 ----HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL-- 231
               +D+NQ+ +A+D AI+   L  +FP+     S     +         + N N +L  
Sbjct: 184 GTGENDENQM-SAQDVAIVARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPG 242

Query: 232 --NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             N    +DG+KTG T  +G   V ++   D  I+ VV+
Sbjct: 243 FVNYKEGVDGLKTGTTELAGACFVGTITKNDQRIITVVL 281


>gi|257883085|ref|ZP_05662738.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
           1,231,502]
 gi|257818743|gb|EEV46071.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
           1,231,502]
          Length = 435

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 29/219 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGIL 133
           AS+TK++ LYI+ + ++  KL  + ++ +S  A     T + S + L ++  +T ++   
Sbjct: 64  ASITKIIGLYIVLDQVKEGKLSWDDKVSISDYAENLSITPDLSNVPLHKENTYTVKELFD 123

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----------- 182
           + I +SAN    A  E ISGSE KF   M  + K  G+++    NASGL           
Sbjct: 124 SAIIQSANASMVALAEKISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPE 183

Query: 183 ----HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL-- 231
               +D+NQ+ +A+D AI+   L  +FP+     S     +         + N N +L  
Sbjct: 184 GTGENDENQM-SAQDVAIVARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPG 242

Query: 232 --NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             N    +DG+KTG T  +G   V ++   D  I+ VV+
Sbjct: 243 FVNYKEGVDGLKTGTTELAGACFVGTITKNDQRIITVVL 281


>gi|168204840|ref|ZP_02630845.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens E str. JGS1987]
 gi|170663667|gb|EDT16350.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens E str. JGS1987]
          Length = 423

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 101/209 (48%), Gaps = 22/209 (10%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE  YPAS TK+MT  +  E+        N   P +  A  Q P   Y    ++     G
Sbjct: 60  DEKAYPASTTKVMTSLLFAEHASK-----NDSFPYTADAKAQQP---YTLNNSFGPIPVG 111

Query: 132 --------ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
                   + AL+  SAND +    + ++GS +KF+++M+++ KK+G++NT +   +GLH
Sbjct: 112 EGMNANDLMKALLMFSANDAAAVIADGVAGSAEKFSVMMNDEVKKLGLKNTHFVTPNGLH 171

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIITNHNKLLNKMHNIDG 239
           + +  +TA D A++     KN P   +  +++        +  ++ N NK L    NI G
Sbjct: 172 NDDHYSTAYDLAVILQNAYKN-PWVSETMALKDSDITVNGKKVLLENRNKELGIDGNIGG 230

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            KTG+T  +G  +V+        I+  V+
Sbjct: 231 -KTGFTTPAGRCLVSVYERNGRKIIGAVL 258


>gi|294623044|ref|ZP_06701933.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium U0317]
 gi|291597600|gb|EFF28762.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium U0317]
          Length = 435

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 29/219 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGIL 133
           AS+TK++ LYI+ + ++  KL  + ++ +S  A     T + S + L ++  +T ++   
Sbjct: 64  ASITKIIGLYIVLDQVKEGKLSWDDKVSISDYAENLSITPDLSNVPLHKENTYTVKELFD 123

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----------- 182
           + I +SAN    A  E ISGSE KF   M  + K  G+++    NASGL           
Sbjct: 124 SAIIQSANASMVALAEKISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPE 183

Query: 183 ----HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL-- 231
               +D+NQ+ +A+D AI+   L  +FP+     S     +         + N N +L  
Sbjct: 184 GTVENDENQM-SAQDVAIVARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPG 242

Query: 232 --NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             N    +DG+KTG T  +G   V ++   D  I+ VV+
Sbjct: 243 FVNYKEGVDGLKTGTTELAGACFVGTITKNDQRIITVVL 281


>gi|258614356|ref|ZP_05712126.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium DO]
 gi|261209455|ref|ZP_05923818.1| predicted protein [Enterococcus faecium TC 6]
 gi|289567521|ref|ZP_06447868.1| predicted protein [Enterococcus faecium D344SRF]
 gi|294616358|ref|ZP_06696151.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1636]
 gi|260076583|gb|EEW64347.1| predicted protein [Enterococcus faecium TC 6]
 gi|289160683|gb|EFD08636.1| predicted protein [Enterococcus faecium D344SRF]
 gi|291590872|gb|EFF22588.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1636]
          Length = 435

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 29/219 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGIL 133
           AS+TK++ LYI+ + ++  KL  + ++ +S  A     T + S + L ++  +T ++   
Sbjct: 64  ASITKIIGLYIVLDQVKEGKLSWDDKVSISDYAENLSITPDLSNVPLHKENTYTVKELFD 123

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----------- 182
           + I +SAN    A  E ISGSE KF   M  + K  G+++    NASGL           
Sbjct: 124 SAIIQSANASMVALAEKISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPE 183

Query: 183 ----HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL-- 231
               +D+NQ+ +A+D AI+   L  +FP+     S     +         + N N +L  
Sbjct: 184 GTGENDENQM-SAQDVAIVARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPG 242

Query: 232 --NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             N    +DG+KTG T  +G   V ++   D  I+ VV+
Sbjct: 243 FVNYKEGVDGLKTGTTELAGACFVGTITKNDQRIITVVL 281


>gi|257440859|ref|ZP_05616614.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium
           prausnitzii A2-165]
 gi|257196699|gb|EEU94983.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium
           prausnitzii A2-165]
          Length = 313

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 15/207 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIP--VSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           YPAS+TKMMT  +  E   +  L     +P  +      QN S    +     T    + 
Sbjct: 83  YPASMTKMMTALLAIE--ANPDLDTPVTLPEEIFPALQAQNASLAGFQAGETATVRDLLY 140

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
             +  S  +   A    +SGSE+ FA  M+ KA ++GM  T + N +GLHD   ++T RD
Sbjct: 141 GAMLPSGAECCEALAREVSGSEEAFAARMNQKAAELGMTGTHFCNPTGLHDPEHVSTVRD 200

Query: 194 QAIL--GILLRKNFPQYY--KYFSIRKFRYRNRIITNHNKLLNKMHNID-------GIKT 242
            A L    L  + F + +  + +++       +  T H+ LL+++   +       G KT
Sbjct: 201 MARLTEAALQNETFRKLFTTERYTVPATNCHPQGFTMHSTLLSQLDGTELHRGRILGGKT 260

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           GYT  +G  + +    K    + V  G
Sbjct: 261 GYTGEAGLCLASLAEVKGREYILVTAG 287


>gi|325290352|ref|YP_004266533.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965753|gb|ADY56532.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 292

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 111/249 (44%), Gaps = 13/249 (5%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSK 96
           ++ MI     + A   +++I++D    ++   +Q  +   PAS TK+MT  +  E  +  
Sbjct: 38  TMTMIDQHWSVPAITAHTAILMDAQTGEVLYERQSRKVSPPASTTKIMTAILALELSKGD 97

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           ++     + VS+ A     S +YL +       + I   + +S ND   A  E  +G+  
Sbjct: 98  EI-----VTVSEKAGAVGESSIYLNKGDKIKMSELIEGALVKSGNDACVAIAEQTAGTVD 152

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG--ILLRKNFPQYY--KYF 212
            F  LM+ K   IG  NT + N +GL  KN  + A D AI+    L    F +    KY 
Sbjct: 153 SFVELMNKKVLTIGGYNTHFVNPNGLPAKNHYSCAYDLAIMARYALQNDQFSELVKTKYA 212

Query: 213 SIRKFRYRNRI--ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           SI  F    +I    N NKLL       G+KTG T  +G  +V S   ++  ++ VV+  
Sbjct: 213 SI-SFDEPPKIEQFKNTNKLLWSYPFTSGVKTGTTNEAGKCLVASANKENRKLICVVLNA 271

Query: 271 PTSQERDQK 279
           P      QK
Sbjct: 272 PDRYGDSQK 280


>gi|229090529|ref|ZP_04221765.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
 gi|228692796|gb|EEL46519.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
          Length = 310

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K+     ++ VS  A     S +YLK      
Sbjct: 52  GKAEHEPQKIASITKIMTALLAAESGKMKE-----RVLVSNEAVRVEGSAIYLKPGQKVK 106

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 107 LEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGS 166

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 167 HYSSAYDMALLTRYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 225

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 226 FTKKAGRTLVTTA--SKDGLDLIVVTLSASSDWDD 258


>gi|168215602|ref|ZP_02641227.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens NCTC 8239]
 gi|182382030|gb|EDT79509.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens NCTC 8239]
          Length = 423

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 101/209 (48%), Gaps = 22/209 (10%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE  YPAS TK+MT  +  E+        N   P +  A  Q P   Y    ++     G
Sbjct: 60  DEKAYPASTTKVMTSLLFAEHASK-----NDSFPYTADAKAQQP---YTLNNSFGPIPVG 111

Query: 132 --------ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
                   + AL+  SAND +    + ++GS +KF+++M+++ KK+G++NT +   +GLH
Sbjct: 112 EGMNANDLMKALLMFSANDAAAVIADGVAGSAEKFSVMMNDEVKKLGLKNTHFVTPNGLH 171

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIITNHNKLLNKMHNIDG 239
           + +  +TA D A++     KN P   +  +++        +  ++ N NK L    NI G
Sbjct: 172 NDDHYSTAYDLAVILQNAYKN-PWVSETMALKDSDITVNGKKVLLENRNKELGIDGNIGG 230

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            KTG+T  +G  +V+        I+  V+
Sbjct: 231 -KTGFTTPAGRCLVSVYERNGRKIIGAVL 258


>gi|308180223|ref|YP_003924351.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|308045714|gb|ADN98257.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 412

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 116/260 (44%), Gaps = 26/260 (10%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
            LS  + + A+   A    ++ V+D    Q+   +  + + P ASL+K+MTLY++   ++
Sbjct: 22  VLSCNVAAHATSSKADEVKAAYVMDAKSGQVVYAQNADQKLPIASLSKLMTLYLVERAIE 81

Query: 95  SKKLHLNTQIP----VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             ++     +P    V K A +   S + +  K  FT  +   A +  S+N  + A GE+
Sbjct: 82  HGQIKWTDAVPIRKNVRKMATSATLSVMPMPAKETFTVRELFAATLVGSSNSGAIALGEY 141

Query: 151 ISGSEKKFAILMSNKAKKI----------GMQNTIYKN----ASGLHDKNQ-ITTARDQA 195
           ++GS  KF  LM+ +A K           G+ NT  KN      G  D++Q + +AR   
Sbjct: 142 VAGSNDKFIKLMNQQAAKWHLDASFISASGLDNTDLKNYDLKIKGTSDQDQNLVSARAVT 201

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH------NIDGIKTGYTRNSG 249
            +   L   +P   +  + R  +     +    ++L           +DG+KTGYT  +G
Sbjct: 202 TIAQHLIDAYPDVIQVANQRSVKIHKYTVPTSVEILKGAEYYDPRVPVDGLKTGYTNQAG 261

Query: 250 FNIVTSLRYKDDPIVAVVMG 269
             +V + R     ++A  +G
Sbjct: 262 ACLVATYRQNGHRMIATTLG 281


>gi|257884114|ref|ZP_05663767.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
           1,231,501]
 gi|257819952|gb|EEV47100.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
           1,231,501]
          Length = 435

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 29/219 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGIL 133
           AS+TK++ LYI+ + ++  KL  + ++ +S  A     T + S + L ++  +T ++   
Sbjct: 64  ASITKIIGLYIVLDQVKEGKLSWDDKVSISDYAENLSITPDLSNVPLHKENTYTVKELFD 123

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----------- 182
           + I +SAN    A  E ISGSE KF   M  + K  G+++    NASGL           
Sbjct: 124 SAIIQSANASMVALAEKISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPE 183

Query: 183 ----HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL-- 231
               +D+NQ+ +A+D AI+   L  +FP+     S     +         + N N +L  
Sbjct: 184 DTGENDENQM-SAQDVAIVARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPG 242

Query: 232 --NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             N    +DG+KTG T  +G   V ++   D  I+ VV+
Sbjct: 243 FVNYKEGVDGLKTGTTELAGACFVGTITKNDQRIITVVL 281


>gi|19746044|ref|NP_607180.1| D,D-carboxypeptidase, penicillin-binding protein [Streptococcus
           pyogenes MGAS8232]
 gi|19748212|gb|AAL97679.1| putative D,D-carboxypeptidase, penicillin-binding protein
           [Streptococcus pyogenes MGAS8232]
          Length = 411

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 124/252 (49%), Gaps = 33/252 (13%)

Query: 34  ILFLSIIMIS------MASELHAKPKYSSIVIDVNKNQMTGFKQDE--PRYPASLTKMMT 85
           ILF  ++  S      +A++     +++ IV++V+  ++  +++D   P   ASLTK++T
Sbjct: 7   ILFFVVLACSGLGKTVLAADFQVGAEHA-IVVEVDSGRVL-YEKDAKTPDAIASLTKLVT 64

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
            Y++ + + S +L L+ Q+ +S  A       + S +   +KTY + +  + A +  S+N
Sbjct: 65  AYLVLDKVNSGQLQLSDQVNLSDYAFELTTDSSLSNVPFDQKTY-SVQDLLEATLVASSN 123

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQ 187
             + A  E ++GSE  F   M  +  + G+ +    NASGL               ++  
Sbjct: 124 SAAIALAEKVAGSEPNFVAQMRAQLSRWGITSGKILNASGLPNEVLKDHRYPGSALEEEN 183

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTG 243
           + +A+D AI+ + L ++FP+  +     +  +    I + N+LL  M      +DG+KTG
Sbjct: 184 MLSAQDVAIVTMHLLEDFPEILEITKQTEVDFAGNSIKSFNQLLPGMAKGRAGVDGLKTG 243

Query: 244 YTRNSGFNIVTS 255
            T  +G  +V +
Sbjct: 244 TTDLAGHCLVVT 255


>gi|196039076|ref|ZP_03106383.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           NVH0597-99]
 gi|196030221|gb|EDX68821.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           NVH0597-99]
          Length = 374

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K+     ++ VS  A     S +YLK      
Sbjct: 48  GKAEHEPQKIASITKIMTALLAAESGKMKE-----RVLVSNEAVRVEGSAIYLKPGQKVK 102

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 103 LEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGS 162

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 163 HYSSAYDMALLTRYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 221

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 222 FTKKAGRTLVTTA--SKDGLDLIVVTLSASSDWDD 254


>gi|218233929|ref|YP_002364864.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           B4264]
 gi|218161886|gb|ACK61878.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           B4264]
          Length = 438

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 43  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKV 102

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K++
Sbjct: 103 SQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKEL 162

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 163 GLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 222

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 223 KKEFRPEKEKFGMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 264


>gi|118477025|ref|YP_894176.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
           Hakam]
 gi|118416250|gb|ABK84669.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
           Hakam]
          Length = 386

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K+     ++ VS  A     S +YLK      
Sbjct: 60  GKAEHEPQKIASITKIMTALLAAESGKMKE-----RVLVSNEAVRVEGSAIYLKPGQKVK 114

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 115 LEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGS 174

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 175 HYSSAYDMALLTRYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 233

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 234 FTKKAGRTLVTTA--SKDGLDLIVVTLSASSDWDD 266


>gi|262037478|ref|ZP_06010938.1| serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia goodfellowii
           F0264]
 gi|261748513|gb|EEY35892.1| serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia goodfellowii
           F0264]
          Length = 356

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 119/237 (50%), Gaps = 19/237 (8%)

Query: 54  YSSIVI-DVNKNQMTGFKQDEPRYP----ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           Y +I+I D N N      ++E  Y     AS+TK+MT+ +  + + S ++ LN ++ VS+
Sbjct: 30  YKAILIGDTNGN----IAREENSYAVRPLASVTKVMTIMLTLDKVHSGEISLNDRVVVSE 85

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAK 167
            AA+  P  + L     +T    + A   RS+N+ + A  E++S G+  +F   M+NKA+
Sbjct: 86  AAASV-PYGIKLVAGNEYTVRDLLKATAIRSSNNAAYALAEYVSNGNVYEFVNSMNNKAR 144

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ--YYKYFSIRK-----FRYR 220
           + G  +  + +  GL   +   +  DQ     L +       Y +Y +I K       + 
Sbjct: 145 QSGWDSLRFCSPHGLP-PSYTGSCMDQGNARDLYKMAMKAVTYKEYMNIAKESVDFIDHG 203

Query: 221 NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           N  +T  N LL K+  +DG+KTGY   +G NI+ + +   + ++ V++G   ++ RD
Sbjct: 204 NIKLTATNHLLGKVPGVDGLKTGYHNAAGSNIILTAKRNGERMILVILGSTKAKNRD 260


>gi|259048108|ref|ZP_05738509.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella adiacens
           ATCC 49175]
 gi|259035169|gb|EEW36424.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella adiacens
           ATCC 49175]
          Length = 465

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 106/227 (46%), Gaps = 29/227 (12%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYF 126
           QDE R  AS++KM++ Y+I E ++  ++   T+IP+S  A    A  N S + L     +
Sbjct: 66  QDEVRGIASMSKMISQYLILESIKKGEITWETKIPISARANQLSANYNLSNVPLWPNEKY 125

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL---- 182
           T ++   A+   SAN  + A  E+I GSE  +   M  K  + G+++    N +GL    
Sbjct: 126 TIKELFDAISIYSANAATLAIAEYIGGSEANWIERMKAKLNEWGIKDATIINVTGLPNKY 185

Query: 183 -----------HDKNQITTARDQAILGILLRKNFPQYYKYFSI--RKFRYRNRIIT---N 226
                       D+N + +AR  AI+   L  +FP+  K  SI  + FR      T   N
Sbjct: 186 GGSEKNPAFGDEDENSM-SARSVAIIAKNLVNDFPEILKISSIPTQTFRPNGSGTTKMDN 244

Query: 227 HNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            N LL  +      + G+KTG + + G +I T+       ++ V MG
Sbjct: 245 FNYLLPGLLFEYEGVTGLKTGTSESGGASITTTATRNGFSVIVVSMG 291


>gi|229079541|ref|ZP_04212079.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock4-2]
 gi|228703766|gb|EEL56214.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock4-2]
          Length = 416

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 121/243 (49%), Gaps = 30/243 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S    K 
Sbjct: 22  SAILIEENSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKI 81

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ 
Sbjct: 82  SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEF 141

Query: 170 GMQNTIYKNASG---------------LHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           GM++  + N++G               L +KN++ +ARD AIL   L ++FPQ      I
Sbjct: 142 GMKDYKFVNSTGLTNQDLKGYHLEGTTLEEKNKM-SARDCAILAQRLIQDFPQILNTAKI 200

Query: 215 RKFRYRNR-----IITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            K  ++        + N N +L  +      +DG+KTG T  +G     ++      +++
Sbjct: 201 PKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLIS 260

Query: 266 VVM 268
           VV+
Sbjct: 261 VVI 263


>gi|196036818|ref|ZP_03104207.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           W]
 gi|196047629|ref|ZP_03114836.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           03BB108]
 gi|218902679|ref|YP_002450513.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH820]
 gi|225863432|ref|YP_002748810.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           03BB102]
 gi|301053108|ref|YP_003791319.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis CI]
 gi|195990547|gb|EDX54526.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           W]
 gi|196021543|gb|EDX60243.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           03BB108]
 gi|218536387|gb|ACK88785.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH820]
 gi|225788779|gb|ACO28996.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 03BB102]
 gi|300375277|gb|ADK04181.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 374

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K+     ++ VS  A     S +YLK      
Sbjct: 48  GKAEHEPQKIASITKIMTALLAAESGKMKE-----RVLVSNEAVRVEGSAIYLKPGQKVK 102

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 103 LEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGS 162

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 163 HYSSAYDMALLTRYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 221

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 222 FTKKAGRTLVTTA--SKDGLDLIVVTLSASSDWDD 254


>gi|322411118|gb|EFY02026.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 412

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 119/245 (48%), Gaps = 24/245 (9%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTA 110
           +I ++V+  ++   K+ +   P AS+TK++T Y++++ + + KL   + + +S    +  
Sbjct: 32  AIAVEVDSGKILYEKEADKAVPVASITKLLTTYLVYKEIANGKLEWGSSVTISNYPYELT 91

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
              + S + L  + Y T ++ + ALI  +AN  + A  E + G+E KF   MS + K+ G
Sbjct: 92  TNYSISNVPLDARKY-TVKELLKALIVTNANSPAIALAEKMGGTEPKFVDKMSQQLKEWG 150

Query: 171 MQNTIYKNASGL-------------HDKNQ-ITTARDQAILGILLRKNFPQYYKYFSIRK 216
           + +    NA+GL              D+++ + +ARD AI+   L   FP+  K  S   
Sbjct: 151 ISDAKLVNATGLTNHFLGKNKYPKTEDEDENLFSARDLAIIARHLLTEFPEVLKITSKPS 210

Query: 217 FRYRNRIITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
             +  + I ++N +L  M      +DG+  GY+   G + V +       I+ VV+    
Sbjct: 211 ANFAGQTIYSYNYMLKDMPYYRDGVDGLFVGYSEKGGASFVATSVENRMRIITVVLNADQ 270

Query: 273 SQERD 277
           +QE +
Sbjct: 271 AQEDE 275


>gi|323127166|gb|ADX24463.1| putative D,D-carboxypeptidase, penicillin-binding protein
           [Streptococcus dysgalactiae subsp. equisimilis ATCC
           12394]
          Length = 415

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 124/252 (49%), Gaps = 33/252 (13%)

Query: 34  ILFLSIIMIS------MASELHAKPKYSSIVIDVNKNQMTGFKQDE--PRYPASLTKMMT 85
           ILF  ++  S      +A++     +++ IV++V+  ++  +++D   P   ASLTK++T
Sbjct: 11  ILFFVVLACSGLGKTVLAADFQVGAEHA-IVVEVDSGRVL-YEKDAKTPDAIASLTKLVT 68

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
            Y++ + + S +L L+ Q+ +S  A       + S +   +KTY + +  + A +  S+N
Sbjct: 69  AYLVLDKVNSGQLQLSDQVNLSDYAFELTTDSSLSNVPFDQKTY-SVQDLLEATLVASSN 127

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQ 187
             + A  E ++GSE  F   M  +  + G+ +    NASGL               ++  
Sbjct: 128 SAAIALAEKVAGSEPNFVAQMRAQLSRWGITSGKILNASGLPNEVLKDHRYPGSALEEEN 187

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTG 243
           + +A+D AI+ + L ++FP+  +     +  +    I + N+LL  M      +DG+KTG
Sbjct: 188 MLSAQDVAIVTMHLLEDFPEILEITKQTEVDFAGNSIKSFNQLLPGMAKGRAGVDGLKTG 247

Query: 244 YTRNSGFNIVTS 255
            T  +G  +V +
Sbjct: 248 TTDLAGHCLVVT 259


>gi|254520208|ref|ZP_05132264.1| D-alanyl-D-alanine carboxypeptidase [Clostridium sp. 7_2_43FAA]
 gi|226913957|gb|EEH99158.1| D-alanyl-D-alanine carboxypeptidase [Clostridium sp. 7_2_43FAA]
          Length = 418

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 108/208 (51%), Gaps = 14/208 (6%)

Query: 35  LFLSIIMISM-ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEY 92
              S+  I++ A+EL       ++++D    ++   K +  +Y PAS TK+MT  ++ E 
Sbjct: 10  FICSVFTINVKATELPTVYSEGAVLMDGRTGKVIYSKNEHTQYEPASTTKVMTALVVLEN 69

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
            +     L  ++ +++     + S + + +   +T E+ +L L+  S ND + A  E +S
Sbjct: 70  TK-----LTDKVTINEKPTLVDGSAIGIAKGEVYTVEELMLGLLLESGNDCAEALAEHVS 124

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL-------GILLRKNF 205
           GS ++FA LM+ KAK++G  +T +KN SGLH+   +TTA D A++         L+R   
Sbjct: 125 GSNEEFAKLMNAKAKELGALDTTFKNPSGLHEDGHVTTAYDLALIMRAAYQNEDLVRIAQ 184

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLNK 233
            + +KY +        +  TN N+L N+
Sbjct: 185 TESHKYVNHPFSDGSEKWATNRNQLFNE 212


>gi|116874117|ref|YP_850898.1| D-alanyl-D-alanine carboxypeptidase [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116742995|emb|CAK22119.1| D-alanyl-D-alanine carboxypeptidase [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 445

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 107/218 (49%), Gaps = 28/218 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGIL 133
           AS+TKMM  Y++ E +   K+  + ++ +S    K +  ++ S + L+    +T ++   
Sbjct: 65  ASMTKMMDEYLLLEAINDGKIKWDDKVTISEYAYKVSQDRSLSNVPLRLGEEYTVQELYE 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           A+   SAN  + A  E ++GSEK F  LM+ KA+K+ +    + N++GL+          
Sbjct: 125 AMAIYSANGAAIAIAEKVAGSEKAFVDLMNKKAEKLKLGEHQFVNSTGLNNEDLKGGQQV 184

Query: 184 ----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM 234
               D+N++ TAR  A L   L K++P+  K  S  K  +R        +TN N LL  +
Sbjct: 185 GGPKDENKM-TARGMAKLAKHLIKDYPEVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGL 243

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 +DG+KTG T  +G  +  +       ++ VV+
Sbjct: 244 IYGRKGVDGLKTGTTDYAGMCLTATAVEDGMRVITVVL 281


>gi|77409047|ref|ZP_00785765.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae COH1]
 gi|77172341|gb|EAO75492.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae COH1]
          Length = 395

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 120/258 (46%), Gaps = 34/258 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           KPK +SIVID   + +     D  R PAS++KM TLY++FE L   K +LNT   V+ T 
Sbjct: 45  KPK-ASIVIDNKGHILWEDNADLERDPASMSKMFTLYLLFEDLAKGKTNLNTT--VTATE 101

Query: 111 ATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMS 163
             Q  SK+Y      +     +   + I      S+N  +      +S  +   F   ++
Sbjct: 102 TDQAISKIYEISNNNIHAGVAYPIRELITMTAVPSSNVATIMIANHLSQNNPDAFIKRIN 161

Query: 164 NKAKKIGMQNTIYKNASGL-------------HDKN--QITTARDQAILGILLRKNFPQ- 207
             AKK+GM  T + N SG              +D N   +TTARD +IL     K +P  
Sbjct: 162 ETAKKLGMTKTHFYNPSGAVASAFNGLYSPKEYDNNATNVTTARDLSILTYHFLKKYPDI 221

Query: 208 --YYKYFSIRKF---RYRNRIIT-NHNKLLNK--MHNIDGIKTGYTRNSGFNIVTSLRYK 259
             Y KY  ++      Y     T N++    K  +  +DG+KTG + ++ FN + + + +
Sbjct: 222 LNYTKYPEVKAMVGTPYEETFTTYNYSTPGAKFGLEGVDGLKTGSSPSAAFNALVTAKRQ 281

Query: 260 DDPIVAVVMGMPTSQERD 277
           +  ++ VV+G+    ++D
Sbjct: 282 NTRLITVVLGVGDWSDQD 299


>gi|49481056|ref|YP_035686.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49332612|gb|AAT63258.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 374

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K+     ++ VS  A     S +YLK      
Sbjct: 48  GKAEHEPQKIASITKIMTALLAAESGKMKE-----RVLVSNEAVRVEGSAIYLKPGQKVK 102

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 103 LEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGS 162

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 163 HYSSAYDMALLTRYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 221

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 222 FTKKAGRTLVTTA--SKDGLDLIVVTLSASSDWDD 254


>gi|229166411|ref|ZP_04294167.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
 gi|228616985|gb|EEK74054.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
          Length = 382

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 108/224 (48%), Gaps = 30/224 (13%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 56  GKAEHEPQKIASITKIMTALLAAESGKMKEM-----VAVSNEAVRVEGSAIYLKPGQKVK 110

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 111 LEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGS 170

Query: 187 QITTARDQAIL-----------GILLRKNF-PQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
             ++A D A+L           GI   K +    + Y     ++ +++++T++ +     
Sbjct: 171 HYSSAYDMALLTKYAMGNETFKGIFGTKTYKSDSWDY----PWKNKHKLVTSYYEFAT-- 224

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
               G KTG+T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 225 ----GGKTGFTKKAGRTLVTTA--SKDGLDLIVVTLSASSDWDD 262


>gi|110803688|ref|YP_699253.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens SM101]
 gi|110684189|gb|ABG87559.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens SM101]
          Length = 423

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 101/209 (48%), Gaps = 22/209 (10%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE  YPAS TK+MT  +  E+        N   P +  A  Q P   Y    ++     G
Sbjct: 60  DEKAYPASTTKVMTSLLFAEHASK-----NDSFPYTADAKVQQP---YTLNDSFGPIPVG 111

Query: 132 --------ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
                   + AL+  SAND +    + ++GS +KF+++M+++ KK+G++NT +   +GLH
Sbjct: 112 EGMNANDLMKALLMFSANDAAAVIADGVAGSTEKFSVMMNDEVKKLGLKNTHFVTPNGLH 171

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIITNHNKLLNKMHNIDG 239
           + +  +TA D A++     KN P   +  +++        +  ++ N NK L    NI G
Sbjct: 172 NDDHYSTAYDLAVILQNAYKN-PWVRETMALKDSDITVNGKKVLLENRNKELGINGNIGG 230

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            KTG+T  +G  +V+        I+  V+
Sbjct: 231 -KTGFTTPAGRCLVSVYERNGRKIIGTVL 258


>gi|228914143|ref|ZP_04077761.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228932855|ref|ZP_04095722.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228945169|ref|ZP_04107525.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228814404|gb|EEM60669.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228826776|gb|EEM72543.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228845476|gb|EEM90509.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 378

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K+     ++ VS  A     S +YLK      
Sbjct: 52  GKAEHEPQKIASITKIMTALLAAESGKMKE-----RVLVSNEAVRVEGSAIYLKPGQKVK 106

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 107 LEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGS 166

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 167 HYSSAYDMALLTRYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 225

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 226 FTKKAGRTLVTTA--SKDGLDLIVVTLSASSDWDD 258


>gi|228956454|ref|ZP_04118252.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|229039918|ref|ZP_04189684.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH676]
 gi|229107699|ref|ZP_04237337.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock1-15]
 gi|229125530|ref|ZP_04254564.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BDRD-Cer4]
 gi|229142819|ref|ZP_04271263.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BDRD-ST24]
 gi|229148422|ref|ZP_04276680.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus m1550]
 gi|296500847|ref|YP_003662547.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
 gi|228635031|gb|EEK91602.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus m1550]
 gi|228640633|gb|EEK97019.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BDRD-ST24]
 gi|228657914|gb|EEL13718.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BDRD-Cer4]
 gi|228675739|gb|EEL30945.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock1-15]
 gi|228727408|gb|EEL78599.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH676]
 gi|228803211|gb|EEM50031.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|296321899|gb|ADH04827.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
          Length = 415

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 20  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKV 79

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K++
Sbjct: 80  SQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKEL 139

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 140 GLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 199

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 200 KKEFRPEKEKFGMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 241


>gi|52143878|ref|YP_082950.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
 gi|51977347|gb|AAU18897.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
          Length = 374

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K+     ++ VS  A     S +YLK      
Sbjct: 48  GKAEHEPQKIASITKIMTALLAAESGKMKE-----RVLVSNEAVRVEGSAIYLKPGQKVK 102

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 103 LEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGS 162

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 163 HYSSAYDMALLTRYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 221

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 222 FTKKAGRTLVTTA--SKDGLDLIVVTLSASSDWDD 254


>gi|291558993|emb|CBL37793.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
           SSC/2]
          Length = 322

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 105/214 (49%), Gaps = 30/214 (14%)

Query: 76  YPASLTKMMTLYIIFEYLQ-SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           YPAS TK+MT  +  E L  S+ + +   I     AA      ++LK+    T E  + A
Sbjct: 98  YPASTTKIMTALLTLENLNLSQVVTIKHDITFPDGAAVA----IHLKKGDKITVEALLNA 153

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           LI  SAND + A GE ++GSE  F  +M+ +AK++G  NT + N +GLH  +  +TA D 
Sbjct: 154 LIIMSANDAAVALGEAVAGSEANFVKMMNKRAKELGATNTHFANPNGLHLSDHYSTAYDL 213

Query: 195 AILGILLRKNFPQYYKYFSI-----RKFRY--------------RNRIITNHNKLLNKMH 235
                L+ K   ++ ++F+I      +  Y               N+ I     L ++++
Sbjct: 214 ----YLIFKEVAKHNEFFNIAGRSSSRIEYLGSKGEQKIYDMASTNQYIAGTYTLPSQVY 269

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKD-DPIVAVVM 268
            I G KTG T  +G  ++   + KD +  ++VV+
Sbjct: 270 MIGG-KTGTTTQAGSCLILLTKNKDGEEFISVVL 302


>gi|239624021|ref|ZP_04667052.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522052|gb|EEQ61918.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 482

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 121/266 (45%), Gaps = 38/266 (14%)

Query: 35  LFLSIIMISMASEL--HAKPKY---------SSIVIDVNKNQMTGFKQD--EPRYPASLT 81
           + +S+IM+   S +   A+P +         + IV+D++   +  F Q+  E + PAS+T
Sbjct: 7   IIVSLIMVLTMSSITAFARPDWPTDTGVQSEAGIVMDMDSGAVL-FAQNIHEQKIPASIT 65

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGILALIT 137
           K++T  ++ E        L+ ++  S  A     + + +KL L+E    +  + +  ++ 
Sbjct: 66  KLLTALVVIENCDD----LDDKVTFSHDAVYNVESGSGNKLALEEGDVLSVRECLYVMLL 121

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S+N  + A  E+I GS   F  +M+ K   +G Q + + N SGL+D  Q T+A D A++
Sbjct: 122 QSSNQAANALAEYIGGSRSGFVDMMNRKVADLGCQESHFANPSGLNDDTQRTSAYDMALI 181

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNI-------------DGI--KT 242
                +N  Q  +  S RK      I     +  +  H +             D +  KT
Sbjct: 182 ARAAFQN-QQLLEISSTRKASIPATINNPDGRTFSMEHKLLITEDENSVEYYPDAVAGKT 240

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVM 268
           G+T  +G  +VT  R      +AV +
Sbjct: 241 GWTSQAGQTLVTYARRGGRGEIAVTL 266


>gi|322374184|ref|ZP_08048717.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C150]
 gi|321276889|gb|EFX53961.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C150]
          Length = 417

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 114/254 (44%), Gaps = 33/254 (12%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEKTYFTTE 129
           P   AS+TK++T Y++++ +   K+  +T++ +S            S + L  + Y T +
Sbjct: 58  PDGVASMTKILTAYMVYKAIDQGKITWDTEVNISDYPFNLTVDSEVSNVPLDSRKY-TVK 116

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH------ 183
           Q + A +  SAN  + A  E ISG+E  F   M  + KK G+ +    NASGL+      
Sbjct: 117 QLLDATLISSANSAAIALAEKISGTESAFVDTMKAQLKKWGITDAKLYNASGLNNKYLGD 176

Query: 184 --------DKNQITTARDQAILGILLRKNFPQYYKYFSIRK-----FRYRNRIITNHNKL 230
                   D     +A D AI+   L K++PQ      I K     F   N+ +T HN +
Sbjct: 177 NRYPGSKPDDENTMSALDVAIIADHLIKDYPQ---VLDITKQGEVDFEGDNK-LTTHNYM 232

Query: 231 LNKMHN----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L    N    +DG+KTG T  +G + V         ++ VVM      E D+ A    T+
Sbjct: 233 LEGQDNYREGVDGLKTGTTELAGASFVAHSNENGMSLITVVMNADNGGE-DEAARFTATN 291

Query: 287 FLEKKTLKHQQTHR 300
            L    ++H + ++
Sbjct: 292 DLLDYVVQHWKINK 305


>gi|229121111|ref|ZP_04250348.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
 gi|229183764|ref|ZP_04310981.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
 gi|228599613|gb|EEK57216.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
 gi|228662230|gb|EEL17833.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
          Length = 357

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K+     ++ VS  A     S +YLK      
Sbjct: 31  GKAEHEPQKIASITKIMTALLAAESGKMKE-----RVLVSNEAVRVEGSAIYLKPGQKVK 85

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 86  LEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGS 145

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 146 HYSSAYDMALLTRYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 204

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 205 FTKKAGRTLVTTAS--KDGLDLIVVTLSASSDWDD 237


>gi|228926600|ref|ZP_04089669.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228832976|gb|EEM78544.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 378

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K+     ++ VS  A     S +YLK      
Sbjct: 52  GKAEHEPQKIASITKIMTALLAAESGKMKE-----RVLVSNEAVRVEGSAIYLKPGQKVK 106

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 107 LEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGS 166

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 167 HYSSAYDMALLTRYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 225

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 226 FTKKAGRTLVTTA--SKDGLDLIVVTLSASSDWDD 258


>gi|167765525|ref|ZP_02437589.1| hypothetical protein CLOSS21_00019 [Clostridium sp. SS2/1]
 gi|167712710|gb|EDS23289.1| hypothetical protein CLOSS21_00019 [Clostridium sp. SS2/1]
          Length = 311

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 80/149 (53%), Gaps = 10/149 (6%)

Query: 76  YPASLTKMMTLYIIFEYLQ-SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           YPAS TK+MT  +  E L  S+ + +   I     AA      ++LK+    T E  + A
Sbjct: 87  YPASTTKIMTALLTLENLNLSQVVTIKHDITFPDGAAVA----IHLKKGDKITVEALLNA 142

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           LI  SAND + A GE ++GSE  F  +M+ +AK++G  NT + N +GLH  +  +TA D 
Sbjct: 143 LIIMSANDAAVALGEAVAGSEANFVKMMNKRAKELGATNTHFANPNGLHLSDHYSTAYDL 202

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRI 223
                L+ K   ++ ++F+I   R  +RI
Sbjct: 203 ----YLIFKEVAKHNEFFNIAG-RSSSRI 226


>gi|71910061|ref|YP_281611.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS5005]
 gi|71852843|gb|AAZ50866.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS5005]
          Length = 393

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 124/276 (44%), Gaps = 37/276 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +PK SSIV+D N + +      D PR PAS++KM TLYI+FE L   K+ ++T I  + T
Sbjct: 42  RPK-SSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTI--TAT 98

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILM 162
              Q  + +Y      +     +     I      S+N  +     ++S ++   F   +
Sbjct: 99  PTDQAIANIYEISNNNIVAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRV 158

Query: 163 SNKAKKIGMQNTIYKNASGLHDK---------------NQITTARDQAILGILLRKNFPQ 207
           +  AK++GM NT + NASG   +               + ITTARD + L     K +P+
Sbjct: 159 NATAKQLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPE 218

Query: 208 YYKY------FSIRKFRYRNRIIT-NHNKLLNK--MHNIDGIKTGYTRNSGFNIVTSLRY 258
              +       ++    Y     T NH+   N+  M  +DG+KTG + ++ FN + + + 
Sbjct: 219 IISFTNKSVVHTMVGTPYEEEFHTYNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKR 278

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
               ++ +VMG+      DQ     I  F+   T K
Sbjct: 279 GKTRLITIVMGV--GDWSDQNGEFYIHPFVNALTEK 312


>gi|168208677|ref|ZP_02634302.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens B str. ATCC 3626]
 gi|170713013|gb|EDT25195.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens B str. ATCC 3626]
          Length = 423

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 101/209 (48%), Gaps = 22/209 (10%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE  YPAS TK+MT  +  E+        N   P +  A  Q P   Y    ++     G
Sbjct: 60  DEKAYPASTTKVMTSLLFAEHASK-----NDSFPYTADAKAQQP---YTLNNSFGPIPVG 111

Query: 132 --------ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
                   + AL+  SAND +    + ++GS +KF+++M+++ KK+G++NT +   +GLH
Sbjct: 112 EGMNANDLMKALLMFSANDAAAVIADGLAGSAEKFSVMMNDEVKKLGLKNTHFVTPNGLH 171

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIITNHNKLLNKMHNIDG 239
           + +  +TA D A++     KN P   +  +++        +  ++ N NK L    NI G
Sbjct: 172 NDDHYSTAYDLAVILQNAYKN-PWVSETMALKDSDITVNGKKVLLENRNKELGIDGNIGG 230

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            KTG+T  +G  +V+        I+  V+
Sbjct: 231 -KTGFTTPAGRCLVSVYERNGRKIIGAVL 258


>gi|52145200|ref|YP_081628.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
           carboxypeptidase) [Bacillus cereus E33L]
 gi|51978669|gb|AAU20219.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
           carboxypeptidase) [Bacillus cereus E33L]
          Length = 435

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 115/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ + +   KL  + +I VS+ A   
Sbjct: 40  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHDAVDKGKLKWDQKIKVSEYAYKV 99

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K++
Sbjct: 100 SQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKEL 159

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 160 GLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 219

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 220 KKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 261


>gi|160937986|ref|ZP_02085343.1| hypothetical protein CLOBOL_02879 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438980|gb|EDP16735.1| hypothetical protein CLOBOL_02879 [Clostridium bolteae ATCC
           BAA-613]
          Length = 492

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 129/270 (47%), Gaps = 37/270 (13%)

Query: 30  LMGKILFL--SIIMI-SMAS-ELHAKPKY---------SSIVIDVNKNQMTGFKQD--EP 74
           +M +I ++  S+IM+ SMA+    AKP +         + IV+D++   +  F Q+  E 
Sbjct: 14  IMRRISYIITSLIMVFSMATITAFAKPDWPIDTGIQSEAGIVMDMDSGAVL-FAQNIHEQ 72

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQ 130
           + PAS+TK++T  ++ E        L+  +  S  A     +   +K  L+E    +  Q
Sbjct: 73  KIPASITKLLTALVVIENTND----LDAPVTFSHDAIYNVESGAGNKFNLEEGDVLSVRQ 128

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            + A++ +S+N  + A  E+++GS + F  +M+ +  ++G   + + N SGL+D  Q TT
Sbjct: 129 CLYAMLLQSSNQSANALAEYVAGSRQAFVDMMNQRIAELGCNESHFANPSGLNDDTQRTT 188

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRY-------RNRIIT-NHNKLLNKMHNI--DGI 240
           A D AI+     +N P   +  S R             R  +  H  LL+   N   D I
Sbjct: 189 AYDMAIIARACFQN-PTVLEIASARTSTIPATANNPNGRTFSIEHKMLLSDDSNYYPDAI 247

Query: 241 --KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             KTG+T  +G  +VT  R +    +AV +
Sbjct: 248 AGKTGWTSQAGQTLVTYARREGRGQIAVTL 277


>gi|110801081|ref|YP_696655.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens ATCC 13124]
 gi|110675728|gb|ABG84715.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens ATCC 13124]
          Length = 423

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 101/209 (48%), Gaps = 22/209 (10%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE  YPAS TK+MT  +  E+        N   P +  A  Q P   Y    ++     G
Sbjct: 60  DEKAYPASTTKVMTSLLFAEHASK-----NDSFPYTADAKAQQP---YTLNNSFGPIPVG 111

Query: 132 --------ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
                   + AL+  SAND +    + ++GS +KF+++M+++ KK+G++NT +   +GLH
Sbjct: 112 EGMNANDLMKALLMFSANDAAAVIADGLAGSAEKFSVMMNDEVKKLGLKNTHFVTPNGLH 171

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIITNHNKLLNKMHNIDG 239
           + +  +TA D A++     KN P   +  +++        +  ++ N NK L    NI G
Sbjct: 172 NDDHYSTAYDLAVILQNAYKN-PWVSETMALKDSDITVNGKKVLLENRNKELGIDGNIGG 230

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            KTG+T  +G  +V+        I+  V+
Sbjct: 231 -KTGFTTPAGRCLVSVYERNGRKIIGAVL 258


>gi|291550439|emb|CBL26701.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus torques L2-14]
          Length = 452

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 114/237 (48%), Gaps = 20/237 (8%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI-PVSKTAAT 112
           S++++D +  ++   K   E R  AS TK+MT  +    L+S  +    QI  VS  AAT
Sbjct: 68  SAVLMDADSGRILFSKNGQEERAMASTTKIMTCILA---LESSIMDSENQIVTVSDQAAT 124

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           Q    L +     F  +  + +L+  S ND   A  E ++GS +KFA LM+ KA+ IG  
Sbjct: 125 QPKVHLGMVAGERFYLKDLLYSLMLESHNDSGVAIAEAVAGSVEKFADLMNQKARTIGCY 184

Query: 173 NTIYKNASGLH--DKNQI--TTARDQAILGILLRKNFPQYYKYFSIRK---FRY------ 219
           +T +   +GL   D N I  TTA D A +      N  +   + +I +   +++      
Sbjct: 185 STYFITPNGLDAADSNGIHHTTAEDLARIMRYCIMNSKKQEDFLTITRTETYQFQDVEGK 244

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM--GMPTSQ 274
           R+    NHN  LN M      KTG+T ++G+  V +LR  +   +  ++  G P ++
Sbjct: 245 RSFSCYNHNAFLNMMDGALSGKTGFTSDAGYCYVGALRRDERTFIVALLACGWPNNK 301


>gi|30260203|ref|NP_842580.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Ames]
 gi|47525265|ref|YP_016614.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|30253524|gb|AAP24066.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. Ames]
 gi|47500413|gb|AAT29089.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. 'Ames Ancestor']
          Length = 435

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   K   + +I VS+ A   
Sbjct: 40  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKFKWDQKIKVSEYAYKV 99

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K++
Sbjct: 100 SQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKEL 159

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 160 GLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 219

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 220 KKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 261


>gi|327438154|dbj|BAK14519.1| D-alanyl-D-alanine carboxypeptidase [Solibacillus silvestris
           StLB046]
          Length = 445

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 131/268 (48%), Gaps = 34/268 (12%)

Query: 34  ILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLY 87
           IL LS++ ++ A + HA         ++I+ID +  ++   +  E     AS+TKMMT Y
Sbjct: 17  ILILSMLAMTPA-KTHAATDLGLTVDAAILIDADTGKILYEQNAETALGIASMTKMMTEY 75

Query: 88  IIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFTTEQGILALITRSANDV 143
           ++ + ++   +  + +  V++     +QN   S + L+    +T ++   A+   SAN  
Sbjct: 76  LLLDAIKEGSISWDQEYNVTEYTYKVSQNRLLSNVPLRADGTYTIKELYEAMAIYSANAA 135

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------------QIT 189
           + A  E I+G+EK+F  LM  KA+++G++N  + NA+GL++ +               + 
Sbjct: 136 TIAIAETIAGTEKEFLKLMDKKAEELGLENYKFVNATGLNNADLQGMHPEGTGEKDENVM 195

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM----HNIDGI 240
            AR  A L   L K+ P+  +   I K  +R        ++N N +L  +      +DG+
Sbjct: 196 PARSVAKLAYNLLKDHPEMLETAKIPKKVFREGTSDAISMSNWNFMLPGLVYEYEGVDGL 255

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G     + +  D  ++AVVM
Sbjct: 256 KTGTTDFAGHTFTGTAKRGDTRLIAVVM 283


>gi|152977572|ref|YP_001377089.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152026324|gb|ABS24094.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH
           391-98]
          Length = 425

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K+M +Y + E +++ K+  NT++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAVASMSKLMVVYAVLEAIKAGKITWNTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L    AKK+G++   + NA+GL++ + 
Sbjct: 113 VRELYHSIVIFSANGSSIALAELLAGSEKNFLKLADEYAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNGENSLSARD---MGILAKTLITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|65317476|ref|ZP_00390435.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A2012]
          Length = 443

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   K   + +I VS+ A   
Sbjct: 48  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKFKWDQKIKVSEYAYKV 107

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+   S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K++
Sbjct: 108 SQDAXLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKEL 167

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 168 GLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 227

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 228 KKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 269


>gi|160892647|ref|ZP_02073437.1| hypothetical protein CLOL250_00177 [Clostridium sp. L2-50]
 gi|156865688|gb|EDO59119.1| hypothetical protein CLOL250_00177 [Clostridium sp. L2-50]
          Length = 323

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 2/153 (1%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           ++A E ++  K + ++ D  K  +      +  YPAS+TK+MT  ++ E ++   L L+ 
Sbjct: 60  ALADENYSAVKSAVLINDSTKEALVVHNAHDRIYPASMTKLMTGLLVMESIEDGTLSLDD 119

Query: 103 QIPVSKTAATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
            I +S T   Q  N     L +    T +  +  L+ RS ND      E I+GSE  F  
Sbjct: 120 TITLSHTVTFQEDNVGVSDLTKGCSVTVKNLLYGLLIRSYNDCGVLLAEKIAGSEDAFVE 179

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            M+ KA ++G  NT + N  GLH  +  TTA D
Sbjct: 180 KMNEKAFELGATNTHFVNCHGLHSDDHYTTAYD 212


>gi|228990377|ref|ZP_04150342.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
           12442]
 gi|228768903|gb|EEM17501.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
           12442]
          Length = 411

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 129/260 (49%), Gaps = 28/260 (10%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ--GIL 133
           +PAS+TK++T  ++ E+ + ++     Q   S+ A  Q  S   L+ +   T  +   + 
Sbjct: 57  FPASMTKVLTAILLMEHTKPEE-----QFTFSQPALDQEKSNYQLEFQVGETINRNTALT 111

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDV+ A GE I GS + FA +M+ KAK++G +++ +   +GLHD N  TTA D
Sbjct: 112 ILMVLSANDVAYAIGERIGGSIENFANMMNEKAKQLGAKDSHFVTPNGLHDPNHYTTAYD 171

Query: 194 QAIL--GILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRN 247
            A++  G+   + +P+  +  + ++      R  + I N        ++I G KTG+T N
Sbjct: 172 MAMITRGV---QQYPEILQAMNTKRTTVTTSRQTVSIFNKATYFENPYSIGG-KTGFT-N 226

Query: 248 SGFNIVTSLRYKD-DPIVAVVMGMPTS---QERDQKALELITSFLEKKTLKHQQTHRK-- 301
              N +  L  KD + IV VVM        ++  Q A    + F ++  L     H+K  
Sbjct: 227 EARNTLVLLNEKDGNRIVNVVMASQRPEIYEDMRQIADHSFSQFAKQMVLDKNNWHQKAT 286

Query: 302 --DNLSSTSLKKS--LMIKK 317
             D      L+KS  LM+KK
Sbjct: 287 YLDKNIDCELEKSAELMLKK 306


>gi|228996477|ref|ZP_04156116.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
 gi|229004129|ref|ZP_04161930.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4]
 gi|228756990|gb|EEM06234.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4]
 gi|228763109|gb|EEM12017.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
          Length = 411

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 129/260 (49%), Gaps = 28/260 (10%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ--GIL 133
           +PAS+TK++T  ++ E+ + ++     Q   S+ A  Q  S   L+ +   T  +   + 
Sbjct: 57  FPASMTKVLTAILLMEHTKPEE-----QFTFSQPALDQEKSNYQLEFQVGETINRNTALT 111

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDV+ A GE I GS + FA +M+ KAK++G +++ +   +GLHD N  TTA D
Sbjct: 112 ILMVLSANDVAYAIGERIGGSIENFANMMNEKAKQLGAKDSHFVTPNGLHDPNHYTTAYD 171

Query: 194 QAIL--GILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRN 247
            A++  G+   + +P+  +  + ++      R  + I N        ++I G KTG+T N
Sbjct: 172 MAMITRGV---QQYPEILQAMNTKRTTVTTSRQTVSIFNKATYFENPYSIGG-KTGFT-N 226

Query: 248 SGFNIVTSLRYKD-DPIVAVVMGMPTS---QERDQKALELITSFLEKKTLKHQQTHRK-- 301
              N +  L  KD + IV VVM        ++  Q A    + F ++  L     H+K  
Sbjct: 227 EARNTLVLLNEKDGNRIVNVVMASQRPEIYEDMRQIADHSFSQFAKQMVLDKNNWHQKAT 286

Query: 302 --DNLSSTSLKKS--LMIKK 317
             D      L+KS  LM+KK
Sbjct: 287 YLDKNIDCELEKSAELMLKK 306


>gi|28378040|ref|NP_784932.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           WCFS1]
 gi|28270874|emb|CAD63779.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           WCFS1]
          Length = 412

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 109/241 (45%), Gaps = 26/241 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKT 109
           ++ V+D    Q+   +  + + P ASL+K+MTLY++   ++  ++     +P    V K 
Sbjct: 41  AAYVMDAKSGQVVYAQNADQKLPIASLSKLMTLYLVERAIEHGQIKWTDAVPIRKNVRKM 100

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A +   S + +  K  FT  +   A +  S+N  + A GE+++GS  KF  LM+ +A K 
Sbjct: 101 ATSATLSVMPMPAKETFTVRELFAATLVGSSNSGAIALGEYVAGSNDKFIKLMNQQAAKW 160

Query: 170 ----------GMQNTIYKN----ASGLHDKNQ-ITTARDQAILGILLRKNFPQYYKYFSI 214
                     G+ NT  KN      G  D++Q + +AR    +   L   +P   +  + 
Sbjct: 161 HLDASFISASGLDNTDLKNYDLKIKGTSDQDQNLVSARAVTTIAQHLIDAYPDVIQVANQ 220

Query: 215 RKFRYRNRIITNHNKLLNKMH------NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           R  +     +    ++L           +DG+KTGYT  +G  +V + R     ++A  +
Sbjct: 221 RSVKIHKYTVPTSVEILKGAEYYDPRVPVDGLKTGYTNQAGACLVATYRQNGHRMIATTL 280

Query: 269 G 269
           G
Sbjct: 281 G 281


>gi|257879976|ref|ZP_05659629.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
           1,230,933]
 gi|257893087|ref|ZP_05672740.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
           1,231,408]
 gi|257814204|gb|EEV42962.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
           1,230,933]
 gi|257829466|gb|EEV56073.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
           1,231,408]
          Length = 435

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 104/219 (47%), Gaps = 29/219 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGIL 133
           AS+TK++ LYI+ + ++  KL    ++ +S  A     T + S + L ++  +T ++   
Sbjct: 64  ASITKIIGLYIVLDQVKEGKLSWGDKVSISDYAENLSITPDLSNVPLHKENTYTVKELFD 123

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----------- 182
           + I +SAN    A  E ISGSE KF   M  + K  G+++    NASGL           
Sbjct: 124 SAIIQSANASMVALAEKISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPE 183

Query: 183 ----HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL-- 231
               +D+NQ+ +A+D AI+   L  +FP+     S     +         + N N +L  
Sbjct: 184 GTGENDENQM-SAQDVAIVARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPG 242

Query: 232 --NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             N    +DG+KTG T  +G   V ++   D  I+ VV+
Sbjct: 243 FVNYKEGVDGLKTGTTELAGACFVGTITKNDQRIITVVL 281


>gi|255994530|ref|ZP_05427665.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saphenum ATCC
           49989]
 gi|255993243|gb|EEU03332.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saphenum ATCC
           49989]
          Length = 447

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 128/285 (44%), Gaps = 39/285 (13%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D+   PAS TK+MT  +  E +  +K+    ++P    AA      + L+          
Sbjct: 60  DKSVAPASTTKIMTALLTIENVNLQKV---VEVP---QAAEGLKDGINLRTGEKMRIIDL 113

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  L+  SA+D +      +SGS +KFA  M+ KAK++G +NT +KN +G+ +    +TA
Sbjct: 114 LHGLLIASADDTAIVLAYAVSGSVEKFAEKMNQKAKELGCKNTTFKNPNGIDEAGHQSTA 173

Query: 192 RDQAILGILLRKN-----FPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNID------- 238
            D  I+     KN          +Y      +   R++ NHN+LL +  HN++       
Sbjct: 174 YDLFIMSNEFMKNKLMRKIVTKLQYTIPATNKSGVRVLQNHNRLLFDTNHNVEVFGQLRP 233

Query: 239 -------GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
                  G+KTG T N+G  +++  +     + +VVMG  + ++R   ++E +    EK 
Sbjct: 234 AYYEGALGLKTGDTVNAGACLISMAKRHGVEVCSVVMG-TSKKQRFAASIETLDHAFEKY 292

Query: 292 TLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
            LK              +KK   + KLK    +  K+D K   ++
Sbjct: 293 ALKK------------IVKKGEKVAKLKVLQGESDKVDIKVKGSK 325


>gi|77411815|ref|ZP_00788150.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae
           CJB111]
 gi|77162150|gb|EAO73126.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae
           CJB111]
          Length = 393

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 119/258 (46%), Gaps = 34/258 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           KPK +SIVID   + +     D  R PAS++KM TLY++FE L   K  LNT   V+ T 
Sbjct: 45  KPK-ASIVIDNKGHILWEDNADLERDPASMSKMFTLYLLFEDLAKGKTSLNTT--VTATE 101

Query: 111 ATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMS 163
             Q  SK+Y      +     +   + I      S+N  +      +S  +   F   ++
Sbjct: 102 TDQAISKIYEISNNNIHAGVAYPIRELITMTAVPSSNVATIMIANHLSQNNPDAFIKRIN 161

Query: 164 NKAKKIGMQNTIYKNASGL-------------HDKN--QITTARDQAILGILLRKNFPQ- 207
             AKK+GM  T + N SG              +D N   +TTARD +IL     K +P  
Sbjct: 162 ETAKKLGMTKTHFYNPSGAVASAFNGLYSPKEYDNNATNVTTARDLSILTYHFLKKYPDI 221

Query: 208 --YYKYFSIRKF---RYRNRIIT-NHNKLLNK--MHNIDGIKTGYTRNSGFNIVTSLRYK 259
             Y KY  ++      Y     T N++    K  +  +DG+KTG + ++ FN + + + +
Sbjct: 222 LNYTKYPEVKAMVGTPYEETFTTYNYSTPGAKFGLEGVDGLKTGSSPSAAFNALVTAKRQ 281

Query: 260 DDPIVAVVMGMPTSQERD 277
           +  ++ VV+G+    ++D
Sbjct: 282 NTRLITVVLGVGDWSDQD 299


>gi|229603861|ref|YP_002864665.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A0248]
 gi|229268269|gb|ACQ49906.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A0248]
          Length = 438

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   K   + +I VS+ A   
Sbjct: 43  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKFKWDQKIKVSEYAYKV 102

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K++
Sbjct: 103 SQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKEL 162

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 163 GLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 222

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 223 KKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 264


>gi|22536331|ref|NP_687182.1| penicillin-binding protein 4 [Streptococcus agalactiae 2603V/R]
 gi|76787492|ref|YP_328877.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae A909]
 gi|77405132|ref|ZP_00782231.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae H36B]
 gi|22533155|gb|AAM99054.1|AE014198_2 penicillin-binding protein 4, putative [Streptococcus agalactiae
           2603V/R]
 gi|76562549|gb|ABA45133.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae A909]
 gi|77176275|gb|EAO79045.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae H36B]
          Length = 395

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 119/258 (46%), Gaps = 34/258 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           KPK +SIVID   + +     D  R PAS++KM TLY++FE L   K  LNT   V+ T 
Sbjct: 45  KPK-ASIVIDNKGHILWEDNADLERDPASMSKMFTLYLLFEDLAKGKTSLNTT--VTATE 101

Query: 111 ATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMS 163
             Q  SK+Y      +     +   + I      S+N  +      +S  +   F   ++
Sbjct: 102 TDQAISKIYEISNNNIHAGVAYPIRELITMTAVPSSNVATIMIANHLSQNNPDAFIKRIN 161

Query: 164 NKAKKIGMQNTIYKNASGL-------------HDKN--QITTARDQAILGILLRKNFPQ- 207
             AKK+GM  T + N SG              +D N   +TTARD +IL     K +P  
Sbjct: 162 ETAKKLGMTKTHFYNPSGAVASAFNGLYSPKEYDNNATNVTTARDLSILTYHFLKKYPDI 221

Query: 208 --YYKYFSIRKF---RYRNRIIT-NHNKLLNK--MHNIDGIKTGYTRNSGFNIVTSLRYK 259
             Y KY  ++      Y     T N++    K  +  +DG+KTG + ++ FN + + + +
Sbjct: 222 LNYTKYPEVKAMVGTPYEETFTTYNYSTPGAKFGLEGVDGLKTGSSPSAAFNALVTAKRQ 281

Query: 260 DDPIVAVVMGMPTSQERD 277
           +  ++ VV+G+    ++D
Sbjct: 282 NTRLITVVLGVGDWSDQD 299


>gi|291544780|emb|CBL17889.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. 18P13]
          Length = 337

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 111/249 (44%), Gaps = 29/249 (11%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKL 98
           + + +  E+ ++  Y   V +V ++++   K  + R YPAS+TK+MTL +  E      +
Sbjct: 70  VPLELTDEIDSRFAY---VWNVTEDRVLAEKNGQERMYPASMTKLMTLLLACE----SGI 122

Query: 99  HLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
            ++T     K        Q  S++  + +   T    +   I  S  D + A  E + G 
Sbjct: 123 AMDTPYVFDKDMLDPLIAQGASRVGFEPEETVTFADLLYGSILSSGGDATAALAEVVDGD 182

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           E  FA  M+ +A+ +GM +T + NASGLHD    +TARD   + +LL K          +
Sbjct: 183 EASFAKHMNRRAQDLGMFDTHFVNASGLHDDEHYSTARD---IALLLEKTLENATCREIL 239

Query: 215 RKFRY---RNRIITNHNKLLN----KMHN-------IDGIKTGYTRNSGFNIVTSLRYKD 260
               Y   RN +  N  ++ +    +M +         G KTG+T  +G+ + +      
Sbjct: 240 STSVYTTSRNSVHPNGMEIRSVVELRMQDYQPEQVKFQGGKTGFTDQAGYCLASFAEQGS 299

Query: 261 DPIVAVVMG 269
           D  + VV G
Sbjct: 300 DTYIVVVAG 308


>gi|251782267|ref|YP_002996569.1| carboxypeptidase, penicillin-binding protein [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390896|dbj|BAH81355.1| carboxypeptidase, penicillin-binding protein [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 411

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 124/252 (49%), Gaps = 33/252 (13%)

Query: 34  ILFLSIIMIS------MASELHAKPKYSSIVIDVNKNQMTGFKQDE--PRYPASLTKMMT 85
           ILF  ++  S      +A++     +++ IV++V+  ++  +++D   P   ASLTK++T
Sbjct: 7   ILFFVVLACSGLGKTVLAADFQVGAEHA-IVVEVDSGRVL-YEKDAKTPDAIASLTKLVT 64

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
            Y++ + + S +L L+ Q+ +S  A       + S +   +KTY + +  + A +  S+N
Sbjct: 65  AYLVLDKVNSGQLQLSDQVNLSDYAFELTTDSSLSNVPFDQKTY-SVQDLLEATLVASSN 123

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQ 187
             + A  E ++GSE  F   M  +  + G+ +    NASGL               ++  
Sbjct: 124 SAAIALAEKVAGSEPNFVAQMRAQLSRWGITSGKIFNASGLPNEVLKDHRYPGSALEEEN 183

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTG 243
           + +A+D AI+ + L ++FP+  +     +  +    I + N+LL  M      +DG+KTG
Sbjct: 184 MLSAQDVAIVTMHLLEDFPEILEITKQTEVDFAGNSIKSFNQLLPGMAKGRAGVDGLKTG 243

Query: 244 YTRNSGFNIVTS 255
            T  +G  +V +
Sbjct: 244 TTDLAGHCLVVT 255


>gi|304439141|ref|ZP_07399059.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304372273|gb|EFM25861.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 437

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 9/197 (4%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE    AS +K++++Y++ + +++ KL L+  + +   A     S   +KE    T ++ 
Sbjct: 95  DEVVAMASTSKLVSVYVVLDQIKAGKLKLDDMVTIPHEAEVLPGSSYKIKEGDTKTVKEL 154

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL-----HDKN 186
           + A +  S ND  T+    ++GS + F  +M+ K K +G+ N    N +GL      D N
Sbjct: 155 LTAALVISGNDAITSLAIKVAGSTQAFVDMMNKKCKDLGLTNAHMINPTGLTDYSIEDYN 214

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH--NKLLNKMHNIDGIKTGY 244
           ++TT R+  +L   + K  P+  +Y  +      +R  T +  N +L  +  I G+KTGY
Sbjct: 215 KMTT-REMFLLARYIMKEHPEILEYTKMPSIVEADREFTAYSTNPILGVIPEIQGLKTGY 273

Query: 245 TRNSGFN-IVTSLRYKD 260
           T  +G   I T L+  D
Sbjct: 274 TGAAGRCLIATELKPGD 290


>gi|295402720|ref|ZP_06812662.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294975251|gb|EFG50887.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 450

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 115/242 (47%), Gaps = 28/242 (11%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKT 109
           ++I++D N  ++   K  D     AS+TKMMT Y++ E ++ K++  + Q      V + 
Sbjct: 40  AAILVDANTGRILYQKNIDTVLGIASMTKMMTEYLLLEAVKEKRVKWDQQYTPSDYVYRL 99

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L++   +T  +   A+   SAN  + A  E + GSE+ F  +M+ KA ++
Sbjct: 100 SQDRSLSNVPLRKDGKYTIRELYEAMAIYSANAATVAIAEIVGGSEQNFVKMMNEKANQL 159

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G++   + N++GL +++               + +AR  A L   L K +P+  +  S  
Sbjct: 160 GLKGYKFVNSTGLSNEDLKGFHPEGTNQSEENVMSARSVATLAYHLLKEYPEVLETASTP 219

Query: 216 KFRYRNRI-----ITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           +  +R        + N N +L  +      +DG+KTGYT  +G+    +        + V
Sbjct: 220 RKIFREGTDDQIKMDNWNWMLPGLVHAYEGVDGLKTGYTEFAGYCFTGTAERNGVRFITV 279

Query: 267 VM 268
           VM
Sbjct: 280 VM 281


>gi|240146306|ref|ZP_04744907.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis
           L1-82]
 gi|257201547|gb|EEU99831.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis
           L1-82]
          Length = 327

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 23/214 (10%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQ 130
           E  YPAS TK++T YI  +Y       L+  + +S+ AA Q  + S   L        + 
Sbjct: 98  ERLYPASTTKILTAYIALKYCTD----LSQTVTISENAANQASDSSVCGLHAGDVIRMDD 153

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  ++ RS ND + A  E ISGS ++FA LM+ +A  +G   + + N +GL D+N  T+
Sbjct: 154 LLYGMMLRSGNDAAIAIAESISGSVEEFAALMNKEAAALGATQSHFVNPNGLPDENHYTS 213

Query: 191 ARDQAIL--GILLRKNFPQYYKYFS-----------IRKFRYR--NRIITNHNKLLNKMH 235
             D  ++    L  + F Q     S           I +  +   N+ ++ H K  +   
Sbjct: 214 VYDLYLIFRAALQNETFVQIISTTSYDVTYQAGDGTIEEHTWENTNQYLSGHAKSPDGFT 273

Query: 236 NIDGIKTGYTRNSGFNIVT-SLRYKDDPIVAVVM 268
            I G KTG T ++G+ +V  S+  +  PI+++V+
Sbjct: 274 VIGG-KTGTTGDAGYCLVLYSMNEQSQPIISIVL 306


>gi|228901076|ref|ZP_04065285.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis IBL 4222]
 gi|228858592|gb|EEN03043.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis IBL 4222]
          Length = 442

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 121/243 (49%), Gaps = 30/243 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S    K 
Sbjct: 48  SAILIEANSGKILYQKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKI 107

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ 
Sbjct: 108 SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIAGKEGNFVKMMNDKSKEF 167

Query: 170 GMQNTIYKNASG---------------LHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           GM++  + N++G               L +KN++ +ARD AIL   L ++FP+      I
Sbjct: 168 GMKDYKFVNSTGLTNQDLKGYHLEGTTLDEKNKM-SARDCAILAQRLIQDFPKILNTAKI 226

Query: 215 RKFRYRNR-----IITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            K  ++        + N N +L  +      +DG+KTG T  +G     ++      +++
Sbjct: 227 PKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLIS 286

Query: 266 VVM 268
           VV+
Sbjct: 287 VVI 289


>gi|270292858|ref|ZP_06199069.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. M143]
 gi|270278837|gb|EFA24683.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. M143]
          Length = 414

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 105/219 (47%), Gaps = 23/219 (10%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFT 127
           ++P   AS+TK++T+Y+++E L+   + L+T + +S    +       S + ++ + Y T
Sbjct: 50  NQPVEIASITKILTVYLVYEALEQGTISLSTPVDISDYPYQLTTNSEASNVPMEARKY-T 108

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---- 183
            EQ + A +  SAN  + A  E I+GSEK F   M  K  + G+++    N +GL+    
Sbjct: 109 VEQLLEATLVSSANSAAIALAEKIAGSEKDFVDKMRAKLLEWGIKDATIVNTTGLNNETL 168

Query: 184 ----------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                     D+    +A D AI+   L +++PQ  +        +    I + N +L  
Sbjct: 169 GNNIYPGSKKDEENKLSAYDVAIIARNLIRDYPQVLEITKKSSSTFAGMEIHSTNYMLEG 228

Query: 234 M----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           M      +DG+KTG T  +G + V +   K   I+ VV+
Sbjct: 229 MPAYRGGVDGLKTGTTDKAGASFVGTTTEKGMRIITVVL 267


>gi|319744056|gb|EFV96433.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus agalactiae
           ATCC 13813]
          Length = 395

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 119/258 (46%), Gaps = 34/258 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           KPK +SIVID   + +     D  R PAS++KM TLY++FE L   K  LNT   V+ T 
Sbjct: 45  KPK-ASIVIDNKGHILWEDNADLERDPASMSKMFTLYLLFEDLAKGKTSLNTT--VTATE 101

Query: 111 ATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMS 163
             Q  SK+Y      +     +   + I      S+N  +      +S  +   F   ++
Sbjct: 102 TDQAISKIYEISNNNIHAGVAYPIRELITMTAVPSSNVATIMIANHLSQNNPDAFIKRIN 161

Query: 164 NKAKKIGMQNTIYKNASGL-------------HDKN--QITTARDQAILGILLRKNFPQ- 207
             AKK+GM  T + N SG              +D N   +TTARD +IL     K +P  
Sbjct: 162 ETAKKLGMTKTHFYNPSGAVASAFNGLYSPKEYDNNATNVTTARDLSILTYHFLKKYPDI 221

Query: 208 --YYKYFSIRKF---RYRNRIIT-NHNKLLNK--MHNIDGIKTGYTRNSGFNIVTSLRYK 259
             Y KY  ++      Y     T N++    K  +  +DG+KTG + ++ FN + + + +
Sbjct: 222 LNYTKYPEVKAMVGTPYEETFTTYNYSTPGAKFGLEGVDGLKTGSSPSAAFNALVTAKRQ 281

Query: 260 DDPIVAVVMGMPTSQERD 277
           +  ++ VV+G+    ++D
Sbjct: 282 NTRLITVVLGVGDWSDQD 299


>gi|30019617|ref|NP_831248.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
 gi|29895161|gb|AAP08449.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
          Length = 386

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 10/192 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 60  GKAEHEPQKIASITKIMTALLAAESGKMKEM-----VSVSNEAVRVEGSAIYLKPGQKVK 114

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS   F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 115 LEDLVYGLMLRSGNDAAQVIAESVGGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGS 174

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 175 HYSSAYDMALLTKYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 233

Query: 244 YTRNSGFNIVTS 255
           +T+ +G  +VT+
Sbjct: 234 FTKKAGRTLVTT 245


>gi|50913624|ref|YP_059596.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS10394]
 gi|50902698|gb|AAT86413.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS10394]
          Length = 393

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 117/252 (46%), Gaps = 35/252 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +PK SSIV+D N + +      D PR PAS++KM TLYI+FE L   K+ ++T I  + T
Sbjct: 42  RPK-SSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTI--TAT 98

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILM 162
              Q  + +Y      +     +     I      S+N  +     ++S ++   F   +
Sbjct: 99  PTDQAIANIYEISNNNIVAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRI 158

Query: 163 SNKAKKIGMQNTIYKNASGLHDK---------------NQITTARDQAILGILLRKNFPQ 207
           +  AK++GM NT + NASG   +               + ITTARD + L     K +P+
Sbjct: 159 NATAKQLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPE 218

Query: 208 YYKY------FSIRKFRYRNRIIT-NHNKLLNK--MHNIDGIKTGYTRNSGFNIVTSLRY 258
              +       ++    Y     T NH+   N+  M  +DG+KTG + ++ FN + + + 
Sbjct: 219 IISFTNKSVVHTMVGTPYEEEFHTYNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKR 278

Query: 259 KDDPIVAVVMGM 270
               ++ +VMG+
Sbjct: 279 GKTRLITIVMGV 290


>gi|71902908|ref|YP_279711.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS6180]
 gi|71802003|gb|AAX71356.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS6180]
          Length = 393

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 117/252 (46%), Gaps = 35/252 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +PK SSIV+D N + +      D PR PAS++KM TLYI+FE L   K+ ++T I  + T
Sbjct: 42  RPK-SSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTI--TAT 98

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILM 162
              Q  + +Y      +     +     I      S+N  +     ++S ++   F   +
Sbjct: 99  PTDQAIANIYEISNNNIVAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRI 158

Query: 163 SNKAKKIGMQNTIYKNASGLHDK---------------NQITTARDQAILGILLRKNFPQ 207
           +  AK++GM NT + NASG   +               + ITTARD + L     K +P+
Sbjct: 159 NATAKQLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPE 218

Query: 208 YYKY------FSIRKFRYRNRIIT-NHNKLLNK--MHNIDGIKTGYTRNSGFNIVTSLRY 258
              +       ++    Y     T NH+   N+  M  +DG+KTG + ++ FN + + + 
Sbjct: 219 IISFTNKSVVHTMVGTPYEEEFHTYNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKR 278

Query: 259 KDDPIVAVVMGM 270
               ++ +VMG+
Sbjct: 279 GKTRLITIVMGV 290


>gi|306828007|ref|ZP_07461273.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pyogenes
           ATCC 10782]
 gi|304429788|gb|EFM32831.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pyogenes
           ATCC 10782]
          Length = 393

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 117/252 (46%), Gaps = 35/252 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +PK SSIV+D N + +      D PR PAS++KM TLYI+FE L   K+ ++T I  + T
Sbjct: 42  RPK-SSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTI--TAT 98

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILM 162
              Q  + +Y      +     +     I      S+N  +     ++S ++   F   +
Sbjct: 99  PTDQAIANIYEISNNNIVAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRI 158

Query: 163 SNKAKKIGMQNTIYKNASGLHDK---------------NQITTARDQAILGILLRKNFPQ 207
           +  AK++GM NT + NASG   +               + ITTARD + L     K +P+
Sbjct: 159 NATAKQLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPE 218

Query: 208 YYKY------FSIRKFRYRNRIIT-NHNKLLNK--MHNIDGIKTGYTRNSGFNIVTSLRY 258
              +       ++    Y     T NH+   N+  M  +DG+KTG + ++ FN + + + 
Sbjct: 219 IISFTNKSVVHTMVGTPYEEEFHTYNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKR 278

Query: 259 KDDPIVAVVMGM 270
               ++ +VMG+
Sbjct: 279 GKTRLITIVMGV 290


>gi|94989756|ref|YP_597856.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS10270]
 gi|94543264|gb|ABF33312.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS10270]
          Length = 393

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 117/252 (46%), Gaps = 35/252 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +PK SSIV+D N + +      D PR PAS++KM TLYI+FE L   K+ ++T I  + T
Sbjct: 42  RPK-SSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTI--TAT 98

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILM 162
              Q  + +Y      +     +     I      S+N  +     ++S ++   F   +
Sbjct: 99  PTDQAIANIYEISNNNIVAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRI 158

Query: 163 SNKAKKIGMQNTIYKNASGLHDK---------------NQITTARDQAILGILLRKNFPQ 207
           +  AK++GM NT + NASG   +               + ITTARD + L     K +P+
Sbjct: 159 NATAKQLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPE 218

Query: 208 YYKY------FSIRKFRYRNRIIT-NHNKLLNK--MHNIDGIKTGYTRNSGFNIVTSLRY 258
              +       ++    Y     T NH+   N+  M  +DG+KTG + ++ FN + + + 
Sbjct: 219 IISFTNKSVVHTMVGTPYEEEFHTYNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKR 278

Query: 259 KDDPIVAVVMGM 270
               ++ +VMG+
Sbjct: 279 GKTRLITIVMGV 290


>gi|295094843|emb|CBK83934.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus sp. ART55/1]
          Length = 321

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 6/159 (3%)

Query: 41  MISMASELHA---KPKYSSIVID-VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSK 96
           +I+   E+ A      Y+++++D   K+ +         YPAS+TK+MT  ++ E ++  
Sbjct: 52  VIAQGEEIDAANYNGCYAAMLVDETTKDTIVAHNVHGKIYPASMTKIMTGILVMESIEKG 111

Query: 97  KLHLNTQIPVSKTAATQNPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
            + L+  + +++     +   +   L      T +  +  L+  S ND      E I+GS
Sbjct: 112 DISLDDVVTLNRKVTFDDWDAMASDLVGGCSLTVKNLLYGLMITSYNDCGVILAELIAGS 171

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           E  F  +M+ KAK+IG  NT + N  GLHD +  TTA D
Sbjct: 172 ESAFCDMMNEKAKEIGATNTHFVNCHGLHDDDHYTTAYD 210


>gi|260583975|ref|ZP_05851723.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella elegans
           ATCC 700633]
 gi|260158601|gb|EEW93669.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella elegans
           ATCC 700633]
          Length = 464

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 115/251 (45%), Gaps = 34/251 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           KPK SSIV+D    ++      DE R PAS++K++T+Y++ E +Q  +L L+ +I  +K 
Sbjct: 67  KPK-SSIVVDAYTGRILWQDNIDEERDPASISKVLTVYLVMEAIQKGELSLSQKITATKE 125

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
              +  S +Y      + E   +  E+ I   +  S+N  +      +      F   M+
Sbjct: 126 --DEAISNIYAISNNKIIEGVEYPIEELIKMTLVPSSNAATIMLANTLDKDSAAFIGKMN 183

Query: 164 NKAKKIGMQNTIYKNASGL---------------HDKNQITTARDQAILGILLRKNFPQY 208
            KAK++GM +T + NASG                  K   TTARD AIL + L  ++PQ 
Sbjct: 184 AKAKELGMNHTTFNNASGAVAELFQGYYQPEGYDASKPNQTTARDLAILAMDLMNHYPQV 243

Query: 209 YKYF------SIRKFRYRNRIITNHNKLLNKMHNIDGI---KTGYTRNSGFNIVTSLRYK 259
            +Y       ++    Y  +  T +  L    + I+G+   KTG +    FN + +    
Sbjct: 244 LQYTNSAVVKTMEGTPYEEKFDTYNYSLPGAKYGIEGVNGLKTGSSGYGAFNYIATYEKD 303

Query: 260 DDPIVAVVMGM 270
              +V VV+G+
Sbjct: 304 QMKLVEVVLGV 314


>gi|94993640|ref|YP_601738.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS10750]
 gi|94547148|gb|ABF37194.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS10750]
          Length = 393

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 117/252 (46%), Gaps = 35/252 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +PK SSIV+D N + +      D PR PAS++KM TLYI+FE L   K+ ++T I  + T
Sbjct: 42  RPK-SSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTI--TAT 98

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILM 162
              Q  + +Y      +     +     I      S+N  +     ++S ++   F   +
Sbjct: 99  PTDQAIANIYEISNNNIVAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRI 158

Query: 163 SNKAKKIGMQNTIYKNASGLHDK---------------NQITTARDQAILGILLRKNFPQ 207
           +  AK++GM NT + NASG   +               + ITTARD + L     K +P+
Sbjct: 159 NATAKQLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPE 218

Query: 208 YYKY------FSIRKFRYRNRIIT-NHNKLLNK--MHNIDGIKTGYTRNSGFNIVTSLRY 258
              +       ++    Y     T NH+   N+  M  +DG+KTG + ++ FN + + + 
Sbjct: 219 IISFTNKSVVHTMVGTPYEEEFHTYNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKR 278

Query: 259 KDDPIVAVVMGM 270
               ++ +VMG+
Sbjct: 279 GKTRLITIVMGV 290


>gi|218232835|ref|YP_002366250.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           B4264]
 gi|296502139|ref|YP_003663839.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
 gi|218160792|gb|ACK60784.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus B4264]
 gi|296323191|gb|ADH06119.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
          Length = 374

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 10/192 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 48  GKAEHEPQKIASITKIMTALLAAESGKMKEM-----VSVSNEAVRVEGSAIYLKPGQKVK 102

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS   F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 103 LEDLVYGLMLRSGNDAAQVIAESVGGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGS 162

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 163 HYSSAYDMALLTKYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 221

Query: 244 YTRNSGFNIVTS 255
           +T+ +G  +VT+
Sbjct: 222 FTKKAGRTLVTT 233


>gi|313635871|gb|EFS01844.1| D-alanyl-D-alanine carboxypeptidase DacA [Listeria seeligeri FSL
           S4-171]
          Length = 445

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 108/218 (49%), Gaps = 28/218 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPS--KLYLKEKTYFTTEQGIL 133
           AS+TKMM  Y++ E +   KL  + ++ +S+ A   +Q+ S   + L+    +T ++   
Sbjct: 65  ASMTKMMDEYLLLEAINDGKLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYE 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           A+   SAN  + A  E I+GSEK+F  +M+ KA+++ +    + NA+GL+          
Sbjct: 125 AMAIYSANGAAIAISEKIAGSEKEFXAMMNKKAEELKLGEHQFVNATGLNNEDLKGGQQV 184

Query: 184 ----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM 234
               D+N++ TAR  A L   L  ++P+  K  S  K  +R        +TN N LL  +
Sbjct: 185 GGPKDENKM-TARGMAKLAKHLIDDYPEVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGL 243

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 +DG+KTG T  +G  +  +       ++ VV+
Sbjct: 244 IYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVL 281


>gi|209558810|ref|YP_002285282.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes NZ131]
 gi|209540011|gb|ACI60587.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes NZ131]
          Length = 393

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 117/252 (46%), Gaps = 35/252 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +PK SSIV+D N + +      D PR PAS++KM TLYI+FE L   K+ ++T I  + T
Sbjct: 42  RPK-SSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTI--TAT 98

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILM 162
              Q  + +Y      +     +     I      S+N  +     ++S ++   F   +
Sbjct: 99  PTDQAIANIYEISNNNIVAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRI 158

Query: 163 SNKAKKIGMQNTIYKNASGLHDK---------------NQITTARDQAILGILLRKNFPQ 207
           +  AK++GM NT + NASG   +               + ITTARD + L     K +P+
Sbjct: 159 NATAKQLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPE 218

Query: 208 YYKY------FSIRKFRYRNRIIT-NHNKLLNK--MHNIDGIKTGYTRNSGFNIVTSLRY 258
              +       ++    Y     T NH+   N+  M  +DG+KTG + ++ FN + + + 
Sbjct: 219 IISFTNKSVVHTMVGTPYEEEFHTYNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKR 278

Query: 259 KDDPIVAVVMGM 270
               ++ +VMG+
Sbjct: 279 GKTRLITIVMGV 290


>gi|116513223|ref|YP_812130.1| D,D-carboxypeptidase PBP3 [Lactococcus lactis subsp. cremoris SK11]
 gi|116108877|gb|ABJ74017.1| D,D-carboxypeptidase PBP3, Serine peptidase, MEROPS family S11
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 434

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 103/223 (46%), Gaps = 38/223 (17%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGIL 133
           AS+TK++T Y++++ +   KL   T++P+S  A       N S + L +   +T +  + 
Sbjct: 64  ASITKLLTAYLVYKNVAENKLTWTTKVPISDYAYELTQNSNASNIPLAQNGQYTVKDLLN 123

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN------- 186
           AL+  SAN  + A  E I+GSE KF  +M+ + K  G+ ++   NASGL + +       
Sbjct: 124 ALLLPSANSAAVALAEKIAGSEPKFVDMMTAQMKDWGITDSHLVNASGLPNDDLNGHIYP 183

Query: 187 -------QITTARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLLNKM 234
                     +A+  A L   L ++FP+  +     +  +         +TN N++L+  
Sbjct: 184 GSGASATNTMSAKAVATLSYHLIQDFPEVLQITKKTEIPFDTGNEEKMTLTNTNQMLSGF 243

Query: 235 H----NIDGIKT-----------GYTRNSGFNIVTSLRYKDDP 262
                 +DG+KT           G T  +GF I+T +    DP
Sbjct: 244 STSRTGVDGLKTGSTSFQIDCFAGTTNQNGFRIITVVLEATDP 286


>gi|229109023|ref|ZP_04238624.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
 gi|229126883|ref|ZP_04255895.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
 gi|228656823|gb|EEL12649.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
 gi|228674492|gb|EEL29735.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
          Length = 363

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 10/192 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 37  GKAEHEPQKIASITKIMTALLAAESGKMKEM-----VSVSNEAVRVEGSAIYLKPGQKVK 91

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS   F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 92  LEDLVYGLMLRSGNDAAQVIAESVGGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGS 151

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 152 HYSSAYDMALLTKYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 210

Query: 244 YTRNSGFNIVTS 255
           +T+ +G  +VT+
Sbjct: 211 FTKKAGRTLVTT 222


>gi|227890476|ref|ZP_04008281.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus johnsonii ATCC
           33200]
 gi|227849045|gb|EEJ59131.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus johnsonii ATCC
           33200]
          Length = 308

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 105/220 (47%), Gaps = 21/220 (9%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT--QNP--SKLYLKEKTYFTTEQGIL 133
           AS+TK++T+Y+  + ++ KK+  +T +  ++       NP  + + L+    +T  +   
Sbjct: 76  ASMTKLLTVYLTLQAIKEKKISWDTTVTPTQEIVDLGSNPDYASVPLRLGQKYTVRELYY 135

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ----IT 189
           A + +SAN+ +      +SGSE  F   M  +A+K  + N  +    GL +K +    +T
Sbjct: 136 AALIKSANNAARLLAIAVSGSETNFLNQMRQQARKWKLNNAKFVTVDGLPEKKKNFLGMT 195

Query: 190 T-------ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH------N 236
           T       A D AI+   L  N+P+      + +  ++N ++ N NK+LN +        
Sbjct: 196 TTVENKMSANDMAIVARKLIINYPEILNTTKLARAYFQNTLMINSNKMLNGLSYYDSIFP 255

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           +DG+KTG T  +G     +L      ++ V++G     ER
Sbjct: 256 VDGLKTGTTDGAGSCFTCTLNKNGKRVITVILGAENDNER 295


>gi|19745419|ref|NP_606555.1| DD-carboxypeptidase [Streptococcus pyogenes MGAS8232]
 gi|19747530|gb|AAL97054.1| putative DD-carboxypeptidase [Streptococcus pyogenes MGAS8232]
          Length = 393

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 117/252 (46%), Gaps = 35/252 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +PK SSIV+D N + +      D PR PAS++KM TLYI+FE L   K+ ++T I  + T
Sbjct: 42  RPK-SSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTI--TAT 98

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILM 162
              Q  + +Y      +     +     I      S+N  +     ++S ++   F   +
Sbjct: 99  PTDQAIANIYEISNNNIVAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRI 158

Query: 163 SNKAKKIGMQNTIYKNASGLHDK---------------NQITTARDQAILGILLRKNFPQ 207
           +  AK++GM NT + NASG   +               + ITTARD + L     K +P+
Sbjct: 159 NATAKQLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPE 218

Query: 208 YYKY------FSIRKFRYRNRIIT-NHNKLLNK--MHNIDGIKTGYTRNSGFNIVTSLRY 258
              +       ++    Y     T NH+   N+  M  +DG+KTG + ++ FN + + + 
Sbjct: 219 IISFTNKSVVHTMVGTPYEEEFHTYNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKR 278

Query: 259 KDDPIVAVVMGM 270
               ++ +VMG+
Sbjct: 279 GKTRLITIVMGV 290


>gi|302871943|ref|YP_003840579.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574802|gb|ADL42593.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 451

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 107/231 (46%), Gaps = 22/231 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+++ +  Q+   K    R +PAS TK++T  +   Y       LN    VS  A   
Sbjct: 45  SAILVEAHTGQILFEKNPNLRCFPASTTKVLTALVAISYEHD----LNKIFKVSSKATMI 100

Query: 114 NP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            P  S  YL      + +  + A++  SAND +    E I+GS  +F   M+  AK IG 
Sbjct: 101 EPGSSSYYLNPGETISFQDLLYAMLLISANDAANVIAENIAGSIPEFVKKMNEYAKSIGA 160

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN---------R 222
           +N+ + N +GLH     TTA D +++     +N     K FS  ++R            +
Sbjct: 161 KNSHFVNPNGLHSPEHYTTAYDLSLIARQAYQN-EMLRKIFSTVEYRITTASMHKKPEWQ 219

Query: 223 IITNHNKLLNKMHN-----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           II N NKLL K          GIKTGYT  +   ++ S +  D  ++A+++
Sbjct: 220 IIYNINKLLRKNSKYYYPYATGIKTGYTAQAKRCLIASAKKDDIELIAIIL 270


>gi|229149767|ref|ZP_04277997.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
 gi|228633798|gb|EEK90397.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
          Length = 378

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 10/192 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 52  GKAEHEPQKIASITKIMTALLAAESGKMKEM-----VSVSNEAVRVEGSAIYLKPGQKVK 106

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS   F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 107 LEDLVYGLMLRSGNDAAQVIAESVGGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGS 166

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 167 HYSSAYDMALLTKYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 225

Query: 244 YTRNSGFNIVTS 255
           +T+ +G  +VT+
Sbjct: 226 FTKKAGRTLVTT 237


>gi|322392110|ref|ZP_08065572.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus peroris
           ATCC 700780]
 gi|321145010|gb|EFX40409.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus peroris
           ATCC 700780]
          Length = 413

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 107/219 (48%), Gaps = 25/219 (11%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTT 128
           +P   AS++K++T+Y+++E L   K+ L+T + +S    K       S + ++ + Y T 
Sbjct: 50  QPVEIASISKLLTVYLVYEALDQGKITLSTPVEISDYPYKLTTNSEASNVPMEARNY-TV 108

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----- 183
           E+ + A +  SAN  + A  E I+GSEK F  +M  K  + G+Q+    N++GL+     
Sbjct: 109 EELLEATLVSSANSAAIALAEKIAGSEKDFVDMMKAKLLEWGIQDATLVNSTGLNNETLG 168

Query: 184 ----------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                     D+N++ +A D A++   L   +PQ  +        +    I + N +L  
Sbjct: 169 NNIYPGSKKDDENKL-SAYDVAVVARNLILKYPQVLEITKKPSSTFAGMTIHSTNYMLEG 227

Query: 234 M----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +      +DG+KTG T  +G + V +   K   I+ VV+
Sbjct: 228 LPAYRGGVDGLKTGTTDKAGASFVGTTVEKGMRIITVVL 266


>gi|21909749|ref|NP_664017.1| putative DD-carboxypeptidase [Streptococcus pyogenes MGAS315]
 gi|21903933|gb|AAM78820.1| putative DD-carboxypeptidase [Streptococcus pyogenes MGAS315]
          Length = 393

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 117/252 (46%), Gaps = 35/252 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +PK SSIV+D N + +      D PR PAS++KM TLYI+FE L   K+ ++T I  + T
Sbjct: 42  RPK-SSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTI--TAT 98

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILM 162
              Q  + +Y      +     +     I      S+N  +     ++S ++   F   +
Sbjct: 99  PTDQAIANIYEISNNNIVAGVAYPIRDLITLTAVPSSNAATVMIANYLSNNDASAFIDRI 158

Query: 163 SNKAKKIGMQNTIYKNASGLHDK---------------NQITTARDQAILGILLRKNFPQ 207
           +  AK++GM NT + NASG   +               + ITTARD + L     K +P+
Sbjct: 159 NATAKQLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPE 218

Query: 208 YYKY------FSIRKFRYRNRIIT-NHNKLLNK--MHNIDGIKTGYTRNSGFNIVTSLRY 258
              +       ++    Y     T NH+   N+  M  +DG+KTG + ++ FN + + + 
Sbjct: 219 IISFTNKSVVHTMVGTPYEEEFHTYNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKR 278

Query: 259 KDDPIVAVVMGM 270
               ++ +VMG+
Sbjct: 279 GKTRLITIVMGV 290


>gi|329941308|ref|ZP_08290587.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoaurantiacus
           M045]
 gi|329299839|gb|EGG43738.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoaurantiacus
           M045]
          Length = 851

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 95/182 (52%), Gaps = 11/182 (6%)

Query: 78  ASLTKMMTLYIIFE-----YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           AS+TK+MT Y+I +       + +K+ ++   P    A     S + +      T ++ +
Sbjct: 530 ASVTKVMTAYLILKNHPLKGGEGEKIKVDQ--PAEDQATADGESTVKVHAGDSITEKEAL 587

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
            AL+  SAN+V+     + +GSEK F   M+  AK++GM NT Y + SGL  K  ++TA 
Sbjct: 588 QALLIASANNVARLVARWDAGSEKAFVAKMNTTAKQLGMTNTTYTDPSGLE-KTTVSTAV 646

Query: 193 DQAILGILLRKNFPQYYKYFSIRKF-RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           DQ  L     K+   + +  ++ ++  Y+    +N N+L+   + + GIKTG T  +G N
Sbjct: 647 DQVKLAKAAMKDS-SFRQIAAMMEYTDYKGDKHSNWNRLVG-YNGVVGIKTGTTTAAGGN 704

Query: 252 IV 253
           +V
Sbjct: 705 LV 706


>gi|229043310|ref|ZP_04191030.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
 gi|229144168|ref|ZP_04272582.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
 gi|228639176|gb|EEK95592.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
 gi|228726024|gb|EEL77261.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
          Length = 363

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 10/192 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 37  GKAEHEPQKIASITKIMTALLAAESGKMKEM-----VSVSNEAVRVEGSAIYLKPGQKVK 91

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS   F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 92  LEDLVYGLMLRSGNDAAQVIAESVGGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGS 151

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 152 HYSSAYDMALLTKYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 210

Query: 244 YTRNSGFNIVTS 255
           +T+ +G  +VT+
Sbjct: 211 FTKKAGRTLVTT 222


>gi|28895131|ref|NP_801481.1| D,D-carboxypeptidase, penicillin-binding protein [Streptococcus
           pyogenes SSI-1]
 gi|28810376|dbj|BAC63314.1| putative D,D-carboxypeptidase, penicillin-binding protein
           [Streptococcus pyogenes SSI-1]
          Length = 374

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 117/252 (46%), Gaps = 35/252 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +PK SSIV+D N + +      D PR PAS++KM TLYI+FE L   K+ ++T I  + T
Sbjct: 23  RPK-SSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTI--TAT 79

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILM 162
              Q  + +Y      +     +     I      S+N  +     ++S ++   F   +
Sbjct: 80  PTDQAIANIYEISNNNIVAGVAYPIRDLITLTAVPSSNAATVMIANYLSNNDASAFIDRI 139

Query: 163 SNKAKKIGMQNTIYKNASGLHDK---------------NQITTARDQAILGILLRKNFPQ 207
           +  AK++GM NT + NASG   +               + ITTARD + L     K +P+
Sbjct: 140 NATAKQLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPE 199

Query: 208 YYKY------FSIRKFRYRNRIIT-NHNKLLNK--MHNIDGIKTGYTRNSGFNIVTSLRY 258
              +       ++    Y     T NH+   N+  M  +DG+KTG + ++ FN + + + 
Sbjct: 200 IISFTNKSVVHTMVGTPYEEEFHTYNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKR 259

Query: 259 KDDPIVAVVMGM 270
               ++ +VMG+
Sbjct: 260 GKTRLITIVMGV 271


>gi|313893802|ref|ZP_07827368.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313441366|gb|EFR59792.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 268

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 112/239 (46%), Gaps = 22/239 (9%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           ++ID +  ++   K  D+  +PAS TKM+TL    E    K   L+    +S  A +   
Sbjct: 31  VLIDADTKEILFAKNPDKWMHPASTTKMVTLLTALEL---KGTQLDELATISSYATSMEE 87

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S L ++     T E  +  ++  S ND +    E +SGS +KF   M+  A K G +N++
Sbjct: 88  SNLGVRVGDQITLEAVLEGMMVASGNDAAVVVAENVSGSVEKFGKDMTRIAAKAGAKNSV 147

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR------KFRYRNR----IIT 225
           + N  GL      +TARD A++     K     Y+ F  +      K  Y+NR    I T
Sbjct: 148 FLNPHGLTQMGHHSTARDLAMIAAYGMK-----YQMFRDKVANDYYKVPYQNRAPVTIRT 202

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            ++ + NK    +G+KTG+T  +G  ++ S       ++ V++       R ++A++ +
Sbjct: 203 TNHFIRNKYPGANGLKTGFTNAAGECLIASATRNGHTMIVVML---NDDNRWEEAVQFL 258


>gi|89893842|ref|YP_517329.1| hypothetical protein DSY1096 [Desulfitobacterium hafniense Y51]
 gi|219668209|ref|YP_002458644.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
           hafniense DCB-2]
 gi|89333290|dbj|BAE82885.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538469|gb|ACL20208.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
           hafniense DCB-2]
          Length = 324

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 27/232 (11%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLY 119
           + G   +E  YPASLTK+MT  +  E L       N Q  +  + AT       N S   
Sbjct: 85  LMGKGSEEKIYPASLTKIMTAILAIENLP------NLQEKIRLSQATFQGLYQANASMTG 138

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
            + +   +    +  ++  S  +      E I+GSE+KFA+LM+ KA ++GM +T ++NA
Sbjct: 139 FQPEEQVSVMDLLYGVMLPSGAESCVGLAERIAGSERKFALLMNQKAAELGMNHTHFENA 198

Query: 180 SGLHDKNQITTARDQAIL------GILLRKNF-------PQYYKYFSIRKFRYRNRIITN 226
           +GLH +N  TT +D A+L        L R+ F       P   K+     F      +  
Sbjct: 199 TGLHAENHYTTVKDLAVLLSYALQNDLFREVFTASRHSTPPTNKHPGGITFYSTMFSVLG 258

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
            +K+      I G KTGYT  +G  + +  +   +  + +  G   + + +Q
Sbjct: 259 SSKIAGG--EILGGKTGYTDEAGLCLASLAQVGKEQYILITAGAKGNHDSEQ 308


>gi|289436027|ref|YP_003465899.1| hypothetical protein lse_2666 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289172271|emb|CBH28817.1| unnamed protein product [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 445

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 108/218 (49%), Gaps = 28/218 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPS--KLYLKEKTYFTTEQGIL 133
           AS+TKMM  Y++ E +   KL  + ++ +S+ A   +Q+ S   + L+    +T ++   
Sbjct: 65  ASMTKMMDEYLLLEAINDGKLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYE 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           A+   SAN  + A  E I+GSEK+F  +M+ KA+++ +    + NA+GL+          
Sbjct: 125 AMAIYSANGAAIAISEKIAGSEKEFVAMMNKKAEELKLGEHQFVNATGLNNEDLKGGQQV 184

Query: 184 ----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM 234
               D+N++ TAR  A L   L  ++P+  K  S  K  +R        +TN N LL  +
Sbjct: 185 GGPKDENKM-TARGMAKLAKHLIDDYPEVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGL 243

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 +DG+KTG T  +G  +  +       ++ VV+
Sbjct: 244 IYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVL 281


>gi|16802003|ref|NP_472271.1| hypothetical protein lin2944 [Listeria innocua Clip11262]
 gi|16415485|emb|CAC98169.1| lin2944 [Listeria innocua Clip11262]
          Length = 272

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 108/212 (50%), Gaps = 24/212 (11%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL---KEKTYFTTEQGILA 134
           ASLTK+MT +++ E + +KKL  + ++ + +     +PS + L    +K  ++      A
Sbjct: 57  ASLTKLMTAFLVLEAVDNKKLSWDEELDLIR---LDDPSAVSLYAITQKRTWSVRDLYSA 113

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGL--HDKNQITTA 191
           ++  SAND +   G  +   +  F   M+N+AKK+G+ N T + +ASGL    K  ++T 
Sbjct: 114 MLVMSANDAAETLGNRL--DDANFPQKMNNEAKKLGLSNKTKFVSASGLDVDGKMAVSTT 171

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH-------NKLLNKMHNIDGIKTGY 244
           +D  +L   L    P+  +  S      ++ IIT         N  +  +  +DG+KTG+
Sbjct: 172 KDLFLLSSKLISTHPEVLETTS------KSSIITEEGATLESTNDSIGSIQGLDGLKTGF 225

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           T  +G+  + + +     ++++V+   T+++R
Sbjct: 226 TDEAGYCFIGTAKRDGKRVISIVLDADTAEKR 257


>gi|291531257|emb|CBK96842.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum 70/3]
          Length = 390

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 109/237 (45%), Gaps = 17/237 (7%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+I+ +   +   K + E R  AS TK+MT  +  E  +  K     +  V  TA   
Sbjct: 47  SAILIEADTGTVLFSKNEKEHRQIASTTKIMTALLTLEAGEPDK-----EFEVDPTAIKV 101

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             + + L+E    T       ++  S ND + A    ISGS+  FA+LM+ +A++IGM +
Sbjct: 102 EGTSMGLREGDIVTRRALCYGMLLPSGNDAANAAAVNISGSKSAFAVLMNKRAEEIGMTD 161

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRK--NFPQYYKYFSIRKFRY------RNRIIT 225
           T +   SGL    Q + A D   L +L R+  N   + K   + K +        +RI+ 
Sbjct: 162 TNFVTPSGLDADGQYSCAYD---LALLTREAMNNKDFAKICGLPKAKVSFGNPKSDRILV 218

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           N NKLL       G+KTG+T ++   +V+        ++AV +  P       K L+
Sbjct: 219 NSNKLLTSYDGCIGVKTGFTDSARRTLVSCAERDGVRLIAVTLNAPNDWSDHAKMLD 275


>gi|139473104|ref|YP_001127819.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes str.
           Manfredo]
 gi|134271350|emb|CAM29568.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
           pyogenes str. Manfredo]
          Length = 393

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 117/252 (46%), Gaps = 35/252 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +PK SSIV+D N + +      D PR PAS++KM TLYI+FE L   K+ ++T I  + T
Sbjct: 42  RPK-SSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTI--TAT 98

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILM 162
              Q  + +Y      +     +     I      S+N  +     ++S ++   F   +
Sbjct: 99  PTDQAIANIYEISNNNIIAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRI 158

Query: 163 SNKAKKIGMQNTIYKNASGLHDK---------------NQITTARDQAILGILLRKNFPQ 207
           +  AK++GM NT + NASG   +               + ITTARD + L     K +P+
Sbjct: 159 NATAKQLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPE 218

Query: 208 YYKY------FSIRKFRYRNRIIT-NHNKLLNK--MHNIDGIKTGYTRNSGFNIVTSLRY 258
              +       ++    Y     T NH+   N+  M  +DG+KTG + ++ FN + + + 
Sbjct: 219 IISFTNKSVVHTMVGTPYEEEFHTYNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKR 278

Query: 259 KDDPIVAVVMGM 270
               ++ +VMG+
Sbjct: 279 GKTRLITIVMGV 290


>gi|229112950|ref|ZP_04242457.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock1-15]
 gi|228670493|gb|EEL25829.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock1-15]
          Length = 442

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 121/243 (49%), Gaps = 30/243 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S    K 
Sbjct: 48  SAILIEANSGKILYEKSADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKI 107

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ 
Sbjct: 108 SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEF 167

Query: 170 GMQNTIYKNASG---------------LHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           GM++  + N++G               L +KN++ +ARD AIL   L ++FP+      I
Sbjct: 168 GMKDYKFVNSTGLTNQDLKGYHSEGTTLDEKNKM-SARDCAILAQRLIQDFPKILNTAKI 226

Query: 215 RKFRYRNR-----IITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            K  ++        + N N +L  +      +DG+KTG T  +G     ++      +++
Sbjct: 227 PKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLIS 286

Query: 266 VVM 268
           VV+
Sbjct: 287 VVI 289


>gi|317498476|ref|ZP_07956770.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316894169|gb|EFV16357.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 322

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 106/217 (48%), Gaps = 30/217 (13%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQ-SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +  YPAS TK+MT  +  E L  S+ + +   I     AA      ++LK+    T E  
Sbjct: 95  DQAYPASTTKIMTALLTLENLNLSQVVTIKHDITFPDGAAVA----IHLKKGDKITVEAL 150

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + ALI  SAND + A GE ++GSE  F  +M+ +AK++G  NT + N +GLH  +  +TA
Sbjct: 151 LNALIIMSANDAAVALGEAVAGSEANFVKMMNKRAKELGAINTHFANPNGLHLSDHYSTA 210

Query: 192 RDQAILGILLRKNFPQYYKYFSI-----RKFRY--------------RNRIITNHNKLLN 232
            D      L+ K   ++ ++F+I      +  Y               N+ I     L +
Sbjct: 211 YDL----YLIFKEVAKHNEFFNIAGRSSSRIEYLGSKGEQKIYDMASTNQYIAGTYTLPS 266

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKD-DPIVAVVM 268
           +++ I G KTG T  +G  ++   + KD +  ++VV+
Sbjct: 267 QVYMIGG-KTGTTTQAGSCLILLTKNKDGEEFISVVL 302


>gi|227815684|ref|YP_002815693.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. CDC 684]
 gi|254682367|ref|ZP_05146228.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254721249|ref|ZP_05183039.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A1055]
 gi|254733782|ref|ZP_05191496.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254740527|ref|ZP_05198218.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Kruger B]
 gi|254753916|ref|ZP_05205951.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Vollum]
 gi|254759012|ref|ZP_05211039.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Australia 94]
 gi|227004936|gb|ACP14679.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
           CDC 684]
          Length = 374

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 16/217 (7%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K+     ++ VS  A     S +YLK      
Sbjct: 48  GKAEHEPQKIASITKIMTALLAAESGKMKE-----RVLVSNEAVRVEGSAIYLKPGQKVK 102

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 103 LEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGS 162

Query: 187 QITTARDQAILG--ILLRKNFPQYY--KYFSIRKFRYRNRIITNHNKLLNKMHNI-DGIK 241
             ++A D A+L    +  + F + +  K +    + Y  +   N +KL+   +    G K
Sbjct: 163 HYSSAYDMALLTRYAMGNETFKEIFGTKTYKSDSWDYPWK---NKHKLVTSYYEFATGGK 219

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           TG+T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 220 TGFTKKAGRTLVTTA--SKDGLDLIVVTLSASSDWDD 254


>gi|197302181|ref|ZP_03167240.1| hypothetical protein RUMLAC_00907 [Ruminococcus lactaris ATCC
           29176]
 gi|197298612|gb|EDY33153.1| hypothetical protein RUMLAC_00907 [Ruminococcus lactaris ATCC
           29176]
          Length = 464

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 108/235 (45%), Gaps = 28/235 (11%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S+IV+D+N   +   KQ D+P YPAS+TK++T  +  ++ +     L  ++  S+ + + 
Sbjct: 69  SAIVMDMNSGAILYGKQIDKPHYPASITKLLTTLVALDHAK-----LTDKVEFSQDSISF 123

Query: 113 --QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS----GSEKKFAILMSNKA 166
                + + ++     T E  + A++  SAN+VS A  E +     G    F   M+ ++
Sbjct: 124 LQYGDAHIGMRAGEELTLEDSLYAVLLASANEVSYAVAESVGKQMGGDYNTFIEAMNEES 183

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGIL-------------LRKNFPQYYKYFS 213
             +G   + + NA+GLHD+   TTA D A++G               L    P       
Sbjct: 184 DALGCTGSHWTNANGLHDEQHYTTAHDMALIGAAVYQKEAFRTIAQSLTHQIPPTNLVNE 243

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +R    +++++   N   N      G KTGYT  +   +VT     +  +VAVV+
Sbjct: 244 VRTVNQKHKMLWPQNA--NYYEYCKGGKTGYTDQARTTLVTMADNGELQLVAVVL 296


>gi|30261982|ref|NP_844359.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Ames]
 gi|47527245|ref|YP_018594.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49184822|ref|YP_028074.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Sterne]
 gi|65319265|ref|ZP_00392224.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A2012]
 gi|165870241|ref|ZP_02214897.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0488]
 gi|167632885|ref|ZP_02391211.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0442]
 gi|167638465|ref|ZP_02396742.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0193]
 gi|170686389|ref|ZP_02877610.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0465]
 gi|177650876|ref|ZP_02933773.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0174]
 gi|190566291|ref|ZP_03019209.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis Tsiankovskii-I]
 gi|227815230|ref|YP_002815239.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. CDC 684]
 gi|229601545|ref|YP_002866353.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0248]
 gi|254684545|ref|ZP_05148405.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254721303|ref|ZP_05183093.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A1055]
 gi|254734848|ref|ZP_05192560.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254741249|ref|ZP_05198937.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Kruger B]
 gi|254755503|ref|ZP_05207537.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Vollum]
 gi|254760039|ref|ZP_05212063.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Australia 94]
 gi|30256608|gb|AAP25845.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
           Ames]
 gi|47502393|gb|AAT31069.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49178749|gb|AAT54125.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Sterne]
 gi|164714129|gb|EDR19650.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0488]
 gi|167513766|gb|EDR89135.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0193]
 gi|167531697|gb|EDR94362.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0442]
 gi|170669465|gb|EDT20207.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0465]
 gi|172083337|gb|EDT68398.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0174]
 gi|190562426|gb|EDV16393.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis Tsiankovskii-I]
 gi|227006117|gb|ACP15860.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
           CDC 684]
 gi|229265953|gb|ACQ47590.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0248]
          Length = 285

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 81/148 (54%), Gaps = 12/148 (8%)

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDKNQITT-- 190
           AL+  SAN+ + A  E ++ +EK F  LM+ KAK++ M +   + NASGL + +   T  
Sbjct: 115 ALMIESANNSAVALAEHMAKTEKDFVQLMNAKAKQLKMSDYAKFANASGLQEPDGSETKM 174

Query: 191 -ARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLNK------MHNIDGIK 241
            A D A L   L K++P+  +   +R+    + N  + + N +LNK      +  IDG+K
Sbjct: 175 TAADVANLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDMLNKNNKALYIEGIDGLK 234

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           TG+T ++G+    + +  D  I+ VVMG
Sbjct: 235 TGFTDSAGYCFTGTAKQGDTRIITVVMG 262


>gi|307243482|ref|ZP_07525633.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus
           stomatis DSM 17678]
 gi|306493126|gb|EFM65128.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus
           stomatis DSM 17678]
          Length = 655

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 130/271 (47%), Gaps = 42/271 (15%)

Query: 35  LFLSIIMISMASEL-HA---------KPKYSSIVIDVNKNQMTGFKQDEPR--YPASLTK 82
           L LSI +++ AS + HA         K KY  +++D N  Q+  +K++  +  YPAS TK
Sbjct: 11  LTLSIGLLAPASLISHADQTSDLDTLKSKYM-VLMDYNSGQVL-YKKNATQKMYPASTTK 68

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           + T + + +    K  +L+  + +      +  S +YL+    FT  + + +L+  S+ND
Sbjct: 69  IWTAFCVLK----KAKNLDELVEIKDIPQIEG-SSMYLENGEKFTVRELLESLLIHSSND 123

Query: 143 VSTAFGE-FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           V+    + F  G+ + F   M+ +AKK G  NT + N  GL D +  TTA D AIL  + 
Sbjct: 124 VAYVLAKHFGGGNPQDFINYMNEEAKKFGASNTHFNNPHGLPDTDHYTTAMDMAILSRVA 183

Query: 202 RKN--FPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKMHNI--------------DGI 240
             +    +  K  S+  F+  +RI     + N NK L     I              DGI
Sbjct: 184 YGDPTISEIVKMKSVS-FKASDRIKVERNLVNSNKFLTSSDTIDHKGKTIPIKYDIVDGI 242

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           KTG+T ++G  +V++ +  +  ++A V   P
Sbjct: 243 KTGFTDDAGNCLVSTAKKGNVRLMANVFFAP 273


>gi|312135071|ref|YP_004002409.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1
           [Caldicellulosiruptor owensensis OL]
 gi|311775122|gb|ADQ04609.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Caldicellulosiruptor owensensis OL]
          Length = 451

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 107/233 (45%), Gaps = 26/233 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+++ +  Q+   K    R +PAS TK++T  +   Y       LN    VS  A   
Sbjct: 45  SAILVEAHTGQILFEKNPNLRCFPASTTKVLTALVAISYEHD----LNKIFKVSSKATMI 100

Query: 114 NP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            P  S  YL      + +  + A++  SAND +    E I+GS  +F   M+  AK IG 
Sbjct: 101 EPGSSSYYLNPGETISFQDLLYAMLLISANDAANVIAENIAGSIPEFVKKMNEYAKSIGA 160

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ--YYKYFSIRKFRYRN-------- 221
           +N+ + N  GLH     TTA D   L ++ R+ +      K FS  ++R           
Sbjct: 161 KNSYFVNPHGLHSPEHYTTAYD---LSLIARQAYQNEILRKIFSTVEYRITTASMHEKPE 217

Query: 222 -RIITNHNKLLNKMHN-----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            +II N NKLL K          GIKTGYT  +   ++ S +  D  ++A+++
Sbjct: 218 WQIIYNINKLLRKNSKYYYPYATGIKTGYTTQAKRCLIASAKKDDIELIAIIL 270


>gi|221632467|ref|YP_002521688.1| penicillin-binding protein dacF [Thermomicrobium roseum DSM 5159]
 gi|221157156|gb|ACM06283.1| penicillin-binding protein dacF precursor [Thermomicrobium roseum
           DSM 5159]
          Length = 503

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 95/211 (45%), Gaps = 21/211 (9%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYL-QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           + D PR PASLTK+ T     E   +   L +  Q  V +       S + L+     T 
Sbjct: 30  EPDAPRAPASLTKLATALTAVELAPRDTVLTVQAQDLVGE-------SSMGLRPGEQITL 82

Query: 129 EQGILALITRSANDVSTAFGEFISG--------SEKKFAILMSNKAKKIGMQNTIYKNAS 180
           E  +  L+  S ND +      +SG        +  +F   M+  A+++G++ T ++N  
Sbjct: 83  EAALYGLLLASGNDAAMTIARNLSGLPGDTPEAAVNRFVKQMNLLAQRLGLERTTFRNPH 142

Query: 181 GLHDKNQITTARDQAIL--GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNID 238
           GL  +  +TTARD A+L   +L R   P+  +      +      +   N+LL +   + 
Sbjct: 143 GLDQEGHVTTARDLALLTRAVLQR---PELRRILQTPSYDDGVHAVQTTNRLLGRYPGLI 199

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           G KTG T  +G++++ +       ++ VV+G
Sbjct: 200 GGKTGITEAAGYSLIEAAERDGTTVIVVVLG 230


>gi|227543628|ref|ZP_03973677.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
           CF48-3A]
 gi|300908686|ref|ZP_07126149.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein
           [Lactobacillus reuteri SD2112]
 gi|68160975|gb|AAY86919.1| lr1832 [Lactobacillus reuteri]
 gi|227186372|gb|EEI66443.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
           CF48-3A]
 gi|300894093|gb|EFK87451.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein
           [Lactobacillus reuteri SD2112]
          Length = 403

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 122/247 (49%), Gaps = 36/247 (14%)

Query: 55  SSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAA 111
           ++I+ D +  Q+  +KQ  D+    AS+TK++T+ +I + +Q K+L  +TQ+ ++ + AA
Sbjct: 32  AAIMADASTGQII-YKQNVDKALPVASITKLLTILVIEDEIQQKQLSWDTQVKITPEIAA 90

Query: 112 TQNP---SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
             N    S + LK    ++    I A + +SA+  + A          +F + M  KAKK
Sbjct: 91  ISNDAAYSSIGLKSGQSYSVRTLINAALVKSADGATVALATATGDGTDEFNLKMMQKAKK 150

Query: 169 IGMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSI 214
           IGM  T   N+ GL + +                 +ARD AIL     K++P+  +  + 
Sbjct: 151 IGMTKTNIVNSVGLDNGDMKSFKLADLPNNAANTMSARDVAILSQYFVKHYPELLQITAQ 210

Query: 215 RKFRY---RNRIITNHNKLLNKM----------HNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           ++ ++   ++++ T  N  LNKM            IDG+KTG + ++G    ++ +Y+  
Sbjct: 211 KEVKFQIAKDQVKTEKN--LNKMLPGEQYAVKGVTIDGLKTGTSDSAGACFASTGKYQGH 268

Query: 262 PIVAVVM 268
            I+ V++
Sbjct: 269 RIITVIL 275


>gi|89097521|ref|ZP_01170410.1| hypothetical protein B14911_28020 [Bacillus sp. NRRL B-14911]
 gi|89087817|gb|EAR66929.1| hypothetical protein B14911_28020 [Bacillus sp. NRRL B-14911]
          Length = 387

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 119/255 (46%), Gaps = 29/255 (11%)

Query: 36  FLSIIMISMASELHA----------KPKY---SSIVIDVNKNQMTGFKQDEPR-YPASLT 81
           FLS +M+ M + +HA          +P     ++++ID   N +   K    R YPASLT
Sbjct: 4   FLSALMVFMLT-VHAGQSAVAKEEKEPAIVSEAAVLIDSQSNAILYSKNGSDRMYPASLT 62

Query: 82  KMMT-LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           K+ T +Y I      KK +L+  + VS++A     +K+YL+E    T    I  ++  S 
Sbjct: 63  KIATAIYAI------KKGNLDDMVTVSRSAVETEGTKVYLEEGEKTTLRHLIEGMLINSG 116

Query: 141 NDVSTAFGEFISGSEKKFAI-LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           ND + A  E I G+ +++   L +   K++ + NT + N  GL D+   TTA D A++  
Sbjct: 117 NDAAAAIAEHIDGNIEEYERNLNTFLEKEVHVHNTHFTNPHGLFDERHYTTAEDMALITS 176

Query: 200 LLRKN--FPQYY--KYFSIRKFRYRNRIITNHNKLLNKM--HNIDGIKTGYTRNSGFNIV 253
              KN  F   Y  K  +     +   I T+H  L  ++    I G KTG+   S   + 
Sbjct: 177 YALKNNTFRTIYGTKELAWDGESWDTTIFTHHRMLKGEVPYTGITGGKTGFVNESKQTLA 236

Query: 254 TSLRYKDDPIVAVVM 268
           TS       + A+VM
Sbjct: 237 TSAENGKIQLTAIVM 251


>gi|170706123|ref|ZP_02896585.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0389]
 gi|170129125|gb|EDS97990.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0389]
          Length = 285

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 81/148 (54%), Gaps = 12/148 (8%)

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDKNQITT-- 190
           AL+  SAN+ + A  E ++ +EK F  LM+ KAK++ M +   + NASGL + +   T  
Sbjct: 115 ALMIESANNSAVALAEHMAKTEKDFVQLMNAKAKQLKMSDYAKFANASGLQEPDGSETKM 174

Query: 191 -ARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLNK------MHNIDGIK 241
            A D A L   L K++P+  +   +R+    + N  + + N +LNK      +  IDG+K
Sbjct: 175 TAADVANLAYHLIKDYPEILEVTHLRQSQLAFNNINVISTNDMLNKNNKALYIEGIDGLK 234

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           TG+T ++G+    + +  D  I+ VVMG
Sbjct: 235 TGFTDSAGYCFTGTAKQGDTRIITVVMG 262


>gi|297587879|ref|ZP_06946523.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna ATCC
           53516]
 gi|297574568|gb|EFH93288.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna ATCC
           53516]
          Length = 289

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 25/217 (11%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPS--KLYLKEKTY 125
           D+  YPASLTKMMT++     ++      + + P+ K +      QN S    Y  E T 
Sbjct: 57  DKKVYPASLTKMMTVHTALGEIED----FDKKAPIDKKSYQKLVAQNASMAGFYGNEPTT 112

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
           F  E  +   +  SA + + +    ++GS++KF  LM+  AKK+G+ NT +KN+ G+ + 
Sbjct: 113 F--EDLLYGTMLASAGECADSLAINVAGSKEKFVDLMNENAKKMGLNNTHFKNSEGMDED 170

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKMHNID-- 238
           N  ++A+D A L     KN  ++YK F+  K+     +     I   + +L ++ + D  
Sbjct: 171 NHYSSAKDMAFLLKNSLKN-EKFYKIFTTGKYTSTKTLDHPKGIEIESTVLGRLKDYDQD 229

Query: 239 -----GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
                G K+G T  +G    T         + +VMG+
Sbjct: 230 GFKIIGGKSGTTEKAGLCWATLSEKNGKKYIIIVMGV 266


>gi|225572263|ref|ZP_03781127.1| hypothetical protein RUMHYD_00557 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040268|gb|EEG50514.1| hypothetical protein RUMHYD_00557 [Blautia hydrogenotrophica DSM
           10507]
          Length = 357

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 93/193 (48%), Gaps = 16/193 (8%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           R  AS TK++T  +  E      +     + VS  AA Q   +L + E   +  E  + +
Sbjct: 18  RANASTTKVLTCILALELGDGDDV-----VTVSAKAAAQPDVQLNIVEGETYYLEDLLYS 72

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN----QITT 190
           L+ +S ND + A  E + GS + FA +M++KAK+IG  +T +   +GL   +      TT
Sbjct: 73  LMLKSHNDSAVAIAEHLGGSVEGFAKMMNDKAKEIGCTDTHFVTPNGLDASDTGGKHGTT 132

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLLNKMHNIDGIKTGY 244
           A D A++      N P +      R++ +      R  ++TN N  L+ M  +   KTG+
Sbjct: 133 ATDLALIMRYAISN-PAFLTIAQTREYSFSDISGKRQFVVTNANAFLDMMDGVIAGKTGF 191

Query: 245 TRNSGFNIVTSLR 257
           T ++G+  V + +
Sbjct: 192 TADAGYCYVCAWQ 204


>gi|125625313|ref|YP_001033796.1| DacA protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|124494121|emb|CAL99122.1| DacA protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300072127|gb|ADJ61527.1| D-alanyl-D-alanine carboxypeptidase [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 434

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 103/223 (46%), Gaps = 38/223 (17%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGIL 133
           AS+TK++T Y++++ +   KL   T++P+S  A       N S + L +   +T +  + 
Sbjct: 64  ASITKLLTAYLVYKNVAENKLTWTTKVPISDYAYELTQNSNASNIPLAQNGQYTVKDLLN 123

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN------- 186
           AL+  SAN  + A  E I+GSE KF  +M+ + K  G+ ++   NASGL + +       
Sbjct: 124 ALLLPSANSAAIALAEKIAGSEPKFVDMMTKQMKDWGITDSHLVNASGLPNDDLNGHIYP 183

Query: 187 -------QITTARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLLNKM 234
                     +A+  A L   L ++FP+  +     +  +         +TN N++L+  
Sbjct: 184 GSGASATNTMSAKAVATLSYHLIQDFPEVLQITKKTEIPFDTGNEEKMTLTNTNQMLSGF 243

Query: 235 H----NIDGIKT-----------GYTRNSGFNIVTSLRYKDDP 262
                 +DG+KT           G T  +GF I+T +    DP
Sbjct: 244 STSRTGVDGLKTGSTSFQIDCFAGTTNQNGFRIITVVLEATDP 286


>gi|218896308|ref|YP_002444719.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           G9842]
 gi|218541762|gb|ACK94156.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           G9842]
          Length = 428

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 19/203 (9%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           YPAS TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 73  YPASTTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 127

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ KAK++G +++ +   +GLHD N  TT  D
Sbjct: 128 ILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGARDSHFVTPNGLHDPNHYTTPYD 187

Query: 194 QAIL--GILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRN 247
            A++  G+   +N+P+  +  + ++      R  + I N +      ++I G KTG+T N
Sbjct: 188 MAMITKGV---QNYPEILQAMNTKRTTVTTSRQTVSIFNKSNFFENPYSIGG-KTGFT-N 242

Query: 248 SGFNIVTSLRYKD-DPIVAVVMG 269
              N +  L  KD + I+ VVM 
Sbjct: 243 EARNTLVLLNEKDGNRIINVVMA 265


>gi|225018364|ref|ZP_03707556.1| hypothetical protein CLOSTMETH_02311 [Clostridium methylpentosum
           DSM 5476]
 gi|224948861|gb|EEG30070.1| hypothetical protein CLOSTMETH_02311 [Clostridium methylpentosum
           DSM 5476]
          Length = 304

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 113/245 (46%), Gaps = 50/245 (20%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYI-----------------IFEYLQSK 96
            +I++DV   ++   K  E R YPASLTK+MT  I                 IFE LQ +
Sbjct: 54  CAILMDVQSGEVLLEKNSEKRAYPASLTKIMTALIAIEKNSDLNKSVVLDSGIFERLQRE 113

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
              L    P           ++ L +  Y T        +  S  + + +  E  +GS+K
Sbjct: 114 NASLAGFAP---------GEQVRLIDLIYGT--------LLPSGAEAAVSLAEQTAGSQK 156

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
           +F  LM+ K +++ ++ T Y N +GLH K+QITTA D A L     +N P + + F  + 
Sbjct: 157 EFLKLMNQKGRELKLKRTRYSNVTGLHAKDQITTAADIARLLRYALQN-PTFREVFLSQS 215

Query: 217 F------RYRNRIITNHNKLLNKMHN-------IDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           +      R+ +   T H+ L ++M +       I G KTG+T  +G  + +  +Y+D  +
Sbjct: 216 YTVPPTNRHSDG-FTMHSTLFSRMGDASLEKGEILGGKTGFTDQAGLCLASLAKYQDREL 274

Query: 264 VAVVM 268
           + V +
Sbjct: 275 ILVTL 279


>gi|331083982|ref|ZP_08333089.1| hypothetical protein HMPREF0992_02013 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330402344|gb|EGG81914.1| hypothetical protein HMPREF0992_02013 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 301

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 97/213 (45%), Gaps = 13/213 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++I++D  + Q+ G K  E + YPASLTK+MT+ +  E L + +     +  +      Q
Sbjct: 52  AAILLD-EEGQILGRKNSEKKIYPASLTKIMTVLLSIEKLDNIREITVLREEIFPELYAQ 110

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           + S          T    +   +  S  +   A  E   GSEK+F   M+ KAKK+ M+N
Sbjct: 111 DASMAGFLPGEKVTYRDLLYGAMLPSGAECCVALAEGSCGSEKEFVSEMNKKAKKLVMKN 170

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSI---------RKFRYRNR 222
           T + N +GLHD N  TT  D + L     KN  F + +  FS            F + + 
Sbjct: 171 THFTNTTGLHDDNHYTTVEDLSRLLCYAMKNQDFSKIFTAFSYSVPATNKHPEGFTFFST 230

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           +     K   K   I G KTGYT N+G  + T+
Sbjct: 231 LSQELQKAGVKDSCILGGKTGYTSNAGLCLATA 263


>gi|303241828|ref|ZP_07328323.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acetivibrio
           cellulolyticus CD2]
 gi|302590603|gb|EFL60356.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acetivibrio
           cellulolyticus CD2]
          Length = 429

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 135/279 (48%), Gaps = 30/279 (10%)

Query: 33  KILFLSIIMISM---------ASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTK 82
           K LF+ IIM ++         A  L+   K + I+ID    Q ++ +  D+  YPAS TK
Sbjct: 2   KKLFIGIIMFTILNMNINTAKAEPLNIDAK-AYILIDSKTGQVISEYNADQKLYPASTTK 60

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT  I  E    ++L   +Q  ++          L   E+  F  +  + AL+ RSAN+
Sbjct: 61  IMTAIIGIENADPEQLMTVSQYAINNIGPGGMNIGLLPGEQLKF--KDVLNALLVRSANE 118

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----DKNQITTARDQAILG 198
            +    E +  + + F   M+ +AK++   NT + N  G+      +N +TTARD +++ 
Sbjct: 119 TAYVIAENVGPTPEAFFAKMNQRAKELACTNTNFVNPCGMDTDEASQNHLTTARDLSLMA 178

Query: 199 --ILLRKNFPQYYKYFS--IRKFRYRNRIIT--NHNKLL-----NKMHN-IDGIKTGYTR 246
              +    F +  K  S  I      N   T  + NKL      +K +N + GIKTGYT 
Sbjct: 179 KHAMTLPLFKEIVKKTSCTIPPTNMHNEAYTLPSTNKLFYGKYSSKYYNEVTGIKTGYTV 238

Query: 247 NSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELI 284
            + FN+V+S + ++   +++V++G P S+   Q + +L+
Sbjct: 239 RASFNLVSSAKNEEGMELISVILGCPNSEGIYQSSKDLL 277


>gi|315226481|ref|ZP_07868269.1| serine-type D-Ala-D-Ala carboxypeptidase [Parascardovia denticolens
           DSM 10105]
 gi|315120613|gb|EFT83745.1| serine-type D-Ala-D-Ala carboxypeptidase [Parascardovia denticolens
           DSM 10105]
          Length = 483

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 109/246 (44%), Gaps = 33/246 (13%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP----SKLYLKEKTY 125
           DEP   AS+TK++TLY+ ++ +   KL  +T++ VS  +     NP    + +  +E   
Sbjct: 79  DEPAGIASMTKLITLYLTYKAVAQGKLTWSTKVHVSDYSYQVATNPLTTSADMSRRE--- 135

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
           FT    + A +  SAN  + +  E I GSE KF  LM  + +  G+ +    NASGL++ 
Sbjct: 136 FTVSDLVNAAMLPSANSAAISLAERIGGSEPKFVDLMRAQVRAWGITDARIYNASGLNNS 195

Query: 186 --------------NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
                             +A+D AI+   L  ++P         +  +  + I+  N +L
Sbjct: 196 FLGSNIYPGSSSKAENALSAKDMAIVAWHLIHDYPSILTISKKTQASFGGKTISTTNHML 255

Query: 232 NKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
                    +DG+KTG T  +G     +   K   ++AVV      Q+ D+   + +  F
Sbjct: 256 PGEEAAYPGVDGLKTGTTDEAGACFTATALVKGMRVIAVV------QKADKADADPLARF 309

Query: 288 LEKKTL 293
              KTL
Sbjct: 310 KAMKTL 315


>gi|312109161|ref|YP_003987477.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
           sp. Y4.1MC1]
 gi|311214262|gb|ADP72866.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
           sp. Y4.1MC1]
          Length = 450

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 114/242 (47%), Gaps = 28/242 (11%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKT 109
           ++I++D N  ++   K  D     AS+TKMMT Y++ E ++ K++  + Q      V + 
Sbjct: 40  AAILVDANTGRILYQKNIDTVLGIASMTKMMTEYLLLEAVKEKRVKWDQQYTPSDYVYRL 99

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  +  S + L++   +T  +   A+   SAN  + A  E + GSE+ F  +M+ KA ++
Sbjct: 100 SQDRALSNVPLRKDGKYTIRELYEAMAIYSANAATVAIAEIVGGSEQNFVKMMNEKANQL 159

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G++   + N++GL +++               + +AR  A L   L K +P+  +  S  
Sbjct: 160 GLKGYKFVNSTGLSNEDLKGFHPEGTNQSEENVMSARSVATLAYHLLKEYPEVLETASTP 219

Query: 216 KFRYRNRI-----ITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           +  +R        + N N +L  +      +DG+KTGYT  +G+    +        + V
Sbjct: 220 RKIFREGTDDQIKMDNWNWMLPGLVHAYEGVDGLKTGYTEFAGYCFTGTAERNGVRFITV 279

Query: 267 VM 268
           VM
Sbjct: 280 VM 281


>gi|218235920|ref|YP_002367173.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus B4264]
 gi|218163877|gb|ACK63869.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus B4264]
          Length = 437

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 122/243 (50%), Gaps = 30/243 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S    K 
Sbjct: 43  SAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKI 102

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ 
Sbjct: 103 SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEF 162

Query: 170 GMQNTIYKNASG---------------LHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           GM++  + N++G               L +KN++ +ARD AIL   L ++FP+      I
Sbjct: 163 GMKDYKFVNSTGLTNQDLKGYHPEGTTLDEKNKM-SARDCAILAQRLIQDFPKILNTAKI 221

Query: 215 RK--FRYRNRI---ITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            K  F+   +    + N N +L  +      +DG+KTG T  +G     ++      +++
Sbjct: 222 PKKIFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLIS 281

Query: 266 VVM 268
           VV+
Sbjct: 282 VVI 284


>gi|94987880|ref|YP_595981.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS9429]
 gi|94541388|gb|ABF31437.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS9429]
          Length = 393

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 120/253 (47%), Gaps = 37/253 (14%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +PK SSIV+D N + +      D PR PAS++KM TLYI+FE L   K+ ++T I  + T
Sbjct: 42  RPK-SSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTI--TAT 98

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILM 162
              Q  + +Y      +     +     I      S+N  +     ++S ++   F   +
Sbjct: 99  PTDQAIANIYEISNNNIVAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRI 158

Query: 163 SNKAKKIGMQNTIYKNASGLHDK---------------NQITTARDQA-ILGILLRKNFP 206
           +  AK++GM NT + NASG   +               + ITTARD + +L   LRK +P
Sbjct: 159 NATAKQLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYTFLRK-YP 217

Query: 207 QYYKY------FSIRKFRYRNRIIT-NHNKLLNK--MHNIDGIKTGYTRNSGFNIVTSLR 257
           +   +       ++    Y     T NH+   N+  M  +DG+KTG + ++ FN + + +
Sbjct: 218 EIISFTNKSVVHTMVGTPYEEEFHTYNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAK 277

Query: 258 YKDDPIVAVVMGM 270
                ++ +VMG+
Sbjct: 278 RGKTRLITIVMGV 290


>gi|322411635|gb|EFY02543.1| putative D,D-carboxypeptidase, penicillin-binding protein
           [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 409

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 124/252 (49%), Gaps = 33/252 (13%)

Query: 34  ILFLSIIMIS------MASELHAKPKYSSIVIDVNKNQMTGFKQDE--PRYPASLTKMMT 85
           ILF  ++  S      +A++     +++ IV++ +  ++  +++D   P   ASLTK++T
Sbjct: 7   ILFFVVLACSGLGKTVLAADFQVGAEHA-IVVEADSGRVL-YEKDAKTPDAIASLTKLVT 64

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           +Y++ + ++S +L L+ Q+ +S  A       + S +   +K Y + +  + A +  S+N
Sbjct: 65  VYLVLDKVKSGQLQLSDQVNLSDYAFELTTDSSLSNVPFDQKAY-SVQDLLKATLVASSN 123

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQ 187
             + A  E ++GSE  F   M  +  + G+ +    NASGL               ++  
Sbjct: 124 SAAIALAEKVAGSEPNFVAQMRIQLSRWGITSGKILNASGLPNEVLKDHRYPGSALEEEN 183

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTG 243
           I +ARD AI+ + L ++FP+  +     +  +    I + N+LL  M      +DG+KTG
Sbjct: 184 ILSARDIAIVTMHLLEDFPEILEITKQTEVDFAGNSIHSFNQLLLGMAKGRAGVDGLKTG 243

Query: 244 YTRNSGFNIVTS 255
            T  +G  +V +
Sbjct: 244 TTDLAGHCLVVT 255


>gi|94267082|ref|ZP_01290721.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [delta
           proteobacterium MLMS-1]
 gi|93452219|gb|EAT02875.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [delta
           proteobacterium MLMS-1]
          Length = 209

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 75/140 (53%), Gaps = 3/140 (2%)

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           A++ RSAND + A  E I+G+E+ FA LM++K + +G  NT  +NA+GL  + Q +TARD
Sbjct: 18  AILMRSANDAAVALAEKIAGNERAFARLMTSKVRAMGANNTTLRNANGLTAQGQQSTARD 77

Query: 194 QAILGILLRK-NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
            A+  IL R    P+  +           + +   N+ L +++   G KTG+TR +    
Sbjct: 78  LAL--ILHRAMEHPELAQRLGTVSTNGLGQTMRTSNRALWQINGSQGGKTGFTRAAQQTY 135

Query: 253 VTSLRYKDDPIVAVVMGMPT 272
           V   +  +  ++  +MG  T
Sbjct: 136 VGKFQRGNHELIVALMGSTT 155


>gi|331701010|ref|YP_004397969.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus buchneri
           NRRL B-30929]
 gi|329128353|gb|AEB72906.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus buchneri
           NRRL B-30929]
          Length = 396

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 117/246 (47%), Gaps = 33/246 (13%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           S++ +DVN N     K      P ASL+K+MTLY++ + +   K   ++++  S      
Sbjct: 130 SAVALDVNTNNNVWTKNANTARPIASLSKLMTLYLVRQKISQGKGTWSSKVTTSNAGLKK 189

Query: 111 -ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-----KKFAILMSN 164
               N    +      +T  Q  LA +  S+N+ + A G++++G       KKF  +M+N
Sbjct: 190 LGKSNVFGGFKFNHNSYTVRQLYLAGLIESSNNAAIALGQWVAGGSTPDYNKKFIGMMNN 249

Query: 165 KAKKIGMQNTIYKNASGLHDKNQIT---------------TARDQAILGILLRKNFPQYY 209
           +AK+ G++++ + +ASG+ ++N +                +A D A +      ++    
Sbjct: 250 QAKEWGLKHSSFVSASGM-EQNSLAPYGYSIGASKNANYVSASDIAQISRHFVVDYNDIL 308

Query: 210 KYFSIRKFRYRNRIITNHNKLL------NKMHNIDGIKTGYTRNSGFNIV-TSLRYKDDP 262
              S++  +   + + N+N LL       K  N+DG+KTGYT  +G+  V T  +   D 
Sbjct: 309 TDASVKSMKVDGQTLHNYNNLLPGRKYYQKSLNVDGLKTGYTDPAGYCFVGTGRKSGHDR 368

Query: 263 IVAVVM 268
           I+ VV+
Sbjct: 369 IITVVL 374


>gi|319947348|ref|ZP_08021581.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus australis
           ATCC 700641]
 gi|319746590|gb|EFV98850.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus australis
           ATCC 700641]
          Length = 429

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 120/251 (47%), Gaps = 33/251 (13%)

Query: 51  KPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +PK + IV+D +   +  G   D PR   S+ K+M++Y++ + +Q  +L  +TQI  ++T
Sbjct: 49  RPK-ADIVVDAHTGAIVYGDNIDAPRDSGSMAKLMSVYVLLKAIQEGQLDYDTQITATET 107

Query: 110 --AATQNP----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
             A +QN     S +    K   +T   ++ + + SA  +  A  +   G   KF  LM+
Sbjct: 108 DVAISQNQKLSNSPIVAGAKYKVSTLLNMIFVPSSSAATIMIA-NKVSGGDPDKFLDLMN 166

Query: 164 NKAKKIGMQNTIYKNASGL-------------HDKNQI--TTARDQAILGILLRKNFPQ- 207
            +A++IGM NT + N +G              +D++ I  TTARD AIL   +   FP+ 
Sbjct: 167 QRAQEIGMTNTKWNNPNGAPTAVLDGYYNPTRYDQHAINQTTARDMAILAYHMVNEFPEI 226

Query: 208 --YYKYFSIRKFRYRNRIIT--NHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYK 259
             Y K   I  F   +   T  N+N  L      +   DG+KTG +  + +N   ++   
Sbjct: 227 LNYTKNAKITLFEGTDYEETHENYNYSLEGGRYSLKGADGLKTGSSPTADYNYTLTVNRG 286

Query: 260 DDPIVAVVMGM 270
           +   V V+MG+
Sbjct: 287 NQRFVQVIMGV 297


>gi|154504456|ref|ZP_02041194.1| hypothetical protein RUMGNA_01960 [Ruminococcus gnavus ATCC 29149]
 gi|153795231|gb|EDN77651.1| hypothetical protein RUMGNA_01960 [Ruminococcus gnavus ATCC 29149]
          Length = 468

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 113/232 (48%), Gaps = 21/232 (9%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S IV+D+N    +   K +E RYPAS+TK++++    +Y +     + ++  +S      
Sbjct: 77  SGIVMDMNSGAVLYAKKAEEKRYPASITKVLSVLTALQYAKMSDTVVFSEDSISFL--QW 134

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE-----FISGSEKKFAILMSNKAKK 168
           + +++ +K     + E  +  ++  SAN+VS A  E     +++G   +F   M+  +++
Sbjct: 135 DDAQIGMKPGEEISMESALYGMLLASANEVSYAVAENVGKQYLNGGYAEFIEEMNRISQE 194

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           +G  ++ + NA+GLHD N  TTA D A +     +N  ++ +  +  +++     +T   
Sbjct: 195 LGCTSSNWVNANGLHDDNHYTTAHDMARIAAAAYQN-EEFRRLETPLEYKVPPTNLTAEE 253

Query: 229 KLLNKMH------------NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           ++L++ H            N    KTGYT  S   +VT     D  + AVV+
Sbjct: 254 RILDQNHKMLWPENYYYYANAKAGKTGYTDQSKTTLVTMAEGNDMQLAAVVL 305


>gi|303228596|ref|ZP_07315422.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516688|gb|EFL58604.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 279

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 104/223 (46%), Gaps = 19/223 (8%)

Query: 57  IVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           ++ID  NK  +     D+  +PAS TKM+TL    E    K   L+    +S  A +   
Sbjct: 42  VLIDADNKEILFAKNPDKWMHPASTTKMVTLLTALEL---KGTQLDELATISPYATSMEE 98

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S L ++     T E  +  ++  S ND +    E +SGS + FA  M+  A K G +N++
Sbjct: 99  SNLGVQVGDQITLEGVLEGMMVASGNDAAVVVAENVSGSVENFAKDMNRIAAKAGAKNSV 158

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR------KFRYRNR----IIT 225
           + N  GL      +TARD A++     K     Y+ F  +      K  Y+NR    I T
Sbjct: 159 FLNPHGLTQMGHHSTARDLALIAAYGMK-----YQMFRDKVANDYYKVPYQNRAPETIRT 213

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            ++ + NK    +G+KTG+T  +G  ++ S       ++ V++
Sbjct: 214 TNHFIRNKYPGANGLKTGFTNAAGECLIASATRNGHTMIVVML 256


>gi|323483957|ref|ZP_08089330.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum
           WAL-14163]
 gi|323693446|ref|ZP_08107657.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum
           WAL-14673]
 gi|323402673|gb|EGA94998.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum
           WAL-14163]
 gi|323502501|gb|EGB18352.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum
           WAL-14673]
          Length = 431

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 28/242 (11%)

Query: 50  AKPKY---SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           A PK    S++++D +  ++   K++  + P AS TK+MT  +  E    + +     + 
Sbjct: 64  AGPKLCAQSAVLMDASTGRILYGKEETIKRPMASTTKIMTCILALEQGNPEDM-----VE 118

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           +S  AA+    +L ++    +  +  + +L+  S ND + A  E I G+ + FA +M+ K
Sbjct: 119 ISSYAASMPDVQLNIRAGEKYRLQDLLYSLMLESHNDSAVAVAEHIGGTVEGFAEMMNQK 178

Query: 166 AKKIGMQNTIYKNASGLHDKNQI------TTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
           A+ IG  +T +   +GL    +       TTA D A +     +  P+  ++  I   R 
Sbjct: 179 ARDIGCTDTCFVTPNGLDGTRKADGEPHSTTAADLARIMRYCVEQSPKSREFLEIT--RT 236

Query: 220 RNRIIT-----------NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            +R IT           NHN LL+ M      KTG+T N+G+  V +L+  D      ++
Sbjct: 237 ASRTITDESGKRSFYLGNHNALLSMMPEALSGKTGFTGNAGYCYVAALKKDDKEFTVALL 296

Query: 269 GM 270
           G 
Sbjct: 297 GC 298


>gi|116493443|ref|YP_805178.1| D-alanyl-D-alanine carboxypeptidase [Pediococcus pentosaceus ATCC
           25745]
 gi|116103593|gb|ABJ68736.1| D-alanyl-D-alanine carboxypeptidase [Pediococcus pentosaceus ATCC
           25745]
          Length = 418

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 122/250 (48%), Gaps = 31/250 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT-AAT 112
           S+I +D N  Q+   K +    P AS++K++  Y+I + ++  ++H N ++ ++K+    
Sbjct: 42  SAIAVDENTGQILYSKDENTVRPIASMSKIVAAYLIMKSVKEGQMHWNQKVSINKSLEEV 101

Query: 113 QNPSKLY---LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            N S+L    L     +T    + A +  SAN    + G+  +G+ +KF   M +  KK 
Sbjct: 102 SNNSELTNVPLSSNQTYTVRNLLDASLIYSANAAILSLGKAQAGTSEKFVNEMRSTVKKW 161

Query: 170 GMQNTIYKNASGLHD---------------KNQITTARDQAILGILLRKNFPQYYKYFSI 214
           G+++    NA+GL +               +N++ +A+D AI+   + K FP+      I
Sbjct: 162 GIKDAKLYNAAGLLESQVGSEKYPGTSGNIENEM-SAKDMAIVISHVLKEFPEILNITKI 220

Query: 215 RKFRY----RNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           +K  +        ITNHN+LL         + IDG+KTG +  +G +   + + K   ++
Sbjct: 221 QKTTFNTGKEELEITNHNELLKGAEQYEAKYQIDGLKTGTSDKAGEDFSATGKIKGHRVI 280

Query: 265 AVVMGMPTSQ 274
           +VV+G   +Q
Sbjct: 281 SVVLGSGENQ 290


>gi|326938999|gb|AEA14895.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 428

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 128/258 (49%), Gaps = 24/258 (9%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           YPAS TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 73  YPASTTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 127

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ KAK++G +++ +   +GLHD N  TT  D
Sbjct: 128 ILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSHFVTPNGLHDPNHYTTPYD 187

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +      ++I G KTG+T N  
Sbjct: 188 MAMITKGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSNFFENPYSIGG-KTGFT-NEA 244

Query: 250 FNIVTSLRYKD-DPIVAVVMGMPTS---QERDQKALELITSFLEKKTLK----HQQTHRK 301
            N +  L  KD + I++VVM        ++  Q A      F ++  L     HQ+T   
Sbjct: 245 RNTLVLLNEKDGNRIISVVMASQRPEIYEDLKQMADYSFGQFTKQTVLDKHNWHQKTTYL 304

Query: 302 DNLSSTSLKKS--LMIKK 317
           +   S+ L+KS  LM+KK
Sbjct: 305 NKDVSSELEKSAELMLKK 322


>gi|228899954|ref|ZP_04064194.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           4222]
 gi|228859685|gb|EEN04105.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           4222]
          Length = 407

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 19/203 (9%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           YPAS TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 52  YPASTTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 106

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ KAK++G +++ +   +GLHD N  TT  D
Sbjct: 107 ILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGARDSHFVTPNGLHDPNHYTTPYD 166

Query: 194 QAIL--GILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRN 247
            A++  G+   +N+P+  +  + ++      R  + I N +      ++I G KTG+T N
Sbjct: 167 MAMITKGV---QNYPEILQAMNTKRTTVTTSRQTVSIFNKSNFFENPYSIGG-KTGFT-N 221

Query: 248 SGFNIVTSLRYKD-DPIVAVVMG 269
              N +  L  KD + I+ VVM 
Sbjct: 222 EARNTLVLLNEKDGNRIINVVMA 244


>gi|228964330|ref|ZP_04125449.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795427|gb|EEM42915.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 407

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 19/203 (9%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           YPAS TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 52  YPASTTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 106

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ KAK++G +++ +   +GLHD N  TT  D
Sbjct: 107 ILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGARDSHFVTPNGLHDPNHYTTPYD 166

Query: 194 QAIL--GILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRN 247
            A++  G+   +N+P+  +  + ++      R  + I N +      ++I G KTG+T N
Sbjct: 167 MAMITKGV---QNYPEILQAMNTKRTTVTTSRQTVSIFNKSNFFENPYSIGG-KTGFT-N 221

Query: 248 SGFNIVTSLRYKD-DPIVAVVMG 269
              N +  L  KD + I+ VVM 
Sbjct: 222 EARNTLVLLNEKDGNRIINVVMA 244


>gi|70725304|ref|YP_252218.1| hypothetical protein SH0303 [Staphylococcus haemolyticus JCSC1435]
 gi|68446028|dbj|BAE03612.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 383

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 110/231 (47%), Gaps = 24/231 (10%)

Query: 46  SELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           S +  K + S +++  ++ Q +  ++ +    PAS++KMMTLY+ +E +++ KL LN ++
Sbjct: 39  SSISTKYQPSGVMLTTDQGQILYNYRGNNQVDPASMSKMMTLYLTYEAIENGKLKLNDKV 98

Query: 105 PVSKTAATQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
            ++   AT     N S + LK+   +T E+ I      S+N  +   GE +SG    F  
Sbjct: 99  KITNKYATMSNLPNLSSVSLKQGQTYTIEELIKQTTLASSNAAAMILGEKVSGDNNTFTN 158

Query: 161 LMSNKAKKIGMQNTIYKNASGLHD-----------KNQI---TTARDQAILGILLRKNFP 206
            M+ +AK   M NT + N +G  +           K Q    +TA+D  +L   L K +P
Sbjct: 159 KMNQQAKSFNMTNTNFVNPAGAQNSLLDQYAPSKFKKQDFPKSTAKDMNLLMQALIKKYP 218

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIV 253
           Q  +   + +   R     + N  L      +   DG+KTG T N G+NI 
Sbjct: 219 QILQISKLTRDTQRGNTFKSTNLSLKGQPLYLPGTDGLKTG-TSNKGYNIA 268


>gi|312793435|ref|YP_004026358.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180575|gb|ADQ40745.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 451

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 116/248 (46%), Gaps = 29/248 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+++ +  Q+   K    R +PAS TK++T  +   Y       L+    VS  A   
Sbjct: 45  SAILVEAHTGQILFEKNPNLRCFPASTTKVLTALVAISYEHD----LSKIFKVSSKATMI 100

Query: 114 NP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            P  S  YL      + +  + A++  SAND +    E I+GS  +F   M+  AK IG 
Sbjct: 101 EPGSSSYYLNPGETISFQDLLYAMLLISANDAANVIAENIAGSIPEFVEKMNEYAKSIGA 160

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY--KYFSIRKFRYRN-------- 221
           +N+ + N +GLH     TTA D   L ++ R+ +      K FS  ++R           
Sbjct: 161 ENSHFVNPNGLHSPQHYTTAYD---LSLIARQAYQNEILKKIFSTVEYRITTASMHKKPD 217

Query: 222 -RIITNHNKLLNKMHN-----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
            +II N NKLL K          GIKTGYT  +   ++ S +  D  ++AV++   +S++
Sbjct: 218 WQIIYNINKLLRKNSQYYYPYATGIKTGYTAQAKRCLIASAKKNDIELIAVIL---SSED 274

Query: 276 RDQKALEL 283
               A++L
Sbjct: 275 AFSDAIKL 282


>gi|315924182|ref|ZP_07920408.1| serine-type D-Ala-D-Ala carboxypeptidase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622584|gb|EFV02539.1| serine-type D-Ala-D-Ala carboxypeptidase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 454

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 125/276 (45%), Gaps = 46/276 (16%)

Query: 34  ILFLSIIMISMASELHAKPKYSS-----IVIDVNKNQMTGFKQDEPRYPASLTKMMTLYI 88
           +L L+  +++      A P Y+       V + + + +T   + +  YPAS TKMMT  +
Sbjct: 5   VLILTFAVVTCLPAYAAMPSYTGDEAVYAVEEKSGDVITAQNEHKRMYPASTTKMMTTLV 64

Query: 89  IFEYLQSKKLHLNTQIPVSKTAA--TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
             +Y+  K   ++ Q+ +    +  T + SK  LK+    T  Q    L+  S ND + A
Sbjct: 65  ALDYVADK---MDQQVKIGDEVSLITADSSKADLKKGDTCTWRQLFYGLLLPSGNDAALA 121

Query: 147 FGEFIS---------GSEK---KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD- 193
             + I          G++K   KF  LM+ KA ++ ++++ + N  GLHD N  TTA D 
Sbjct: 122 IAKNIGRAASGDRELGTDKAIDKFVSLMNRKAAQLQLEDSHFVNPHGLHDANHYTTAADL 181

Query: 194 -----QAILGILLRKNFPQYYKYFSI------RKFRYRNRIITNHN---KLLNKMHN--- 236
                 A+    +RK      K +S       +K+   N +I + N   K+    HN   
Sbjct: 182 EKISAAALENPTIRKIVQT--KVYSCKLKSGQKKWINTNSLIISTNDLAKVRESSHNGKQ 239

Query: 237 ----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 G+KTG+T  +G  +V S +  D  +VAV++
Sbjct: 240 YNPYATGVKTGHTDEAGRCLVFSSKDGDKTMVAVIL 275


>gi|218133984|ref|ZP_03462788.1| hypothetical protein BACPEC_01874 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991359|gb|EEC57365.1| hypothetical protein BACPEC_01874 [Bacteroides pectinophilus ATCC
           43243]
          Length = 401

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 113/253 (44%), Gaps = 19/253 (7%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           K  Y S+V D++ +++   +Q D   YPAS+TK+MTL I  E ++           +   
Sbjct: 152 KSAYISLV-DIDSHEIIAGRQYDAKIYPASMTKVMTLIIAVENIRDMNDTFTMTTELIDP 210

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
              +N S+         T    +  LI  S  D + A    I+GSE+++A LM+ K  +I
Sbjct: 211 LVRENASRAGFDPGEKVTANDLLYGLILPSGADAAQALARMIAGSEEEYAGLMNAKCAEI 270

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH-- 227
           G++NT + N SGL+D +Q TT  +   +G+++            +  ++Y       H  
Sbjct: 271 GLKNTHFANTSGLYDADQYTTPVE---MGMIMEYAMQNELCAKVLSTYQYTTAPSPQHPG 327

Query: 228 -----NKLLNKMHNI--DGI-----KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
                + + ++M+    +G+     KTGY   SG  +V+     D   V V  G     +
Sbjct: 328 GIALTSTMFSRMYGTEAEGVTITAGKTGYITESGNCLVSYAVKGDKHYVCVTSGGTNKWD 387

Query: 276 RDQKALELITSFL 288
                +EL  ++L
Sbjct: 388 SIFDDIELYGNYL 400


>gi|30018287|ref|NP_829918.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
 gi|29893827|gb|AAP07119.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
          Length = 438

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 114/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 43  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKV 102

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K++
Sbjct: 103 SQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKEL 162

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N    N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 163 GVKNYKCVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 222

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 223 KKEFRPEKEKFGMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 264


>gi|228938491|ref|ZP_04101100.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228971370|ref|ZP_04131997.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977982|ref|ZP_04138362.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
 gi|228781770|gb|EEM29968.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
 gi|228788406|gb|EEM36358.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821228|gb|EEM67244.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 407

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 128/258 (49%), Gaps = 24/258 (9%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           YPAS TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 52  YPASTTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 106

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ KAK++G +++ +   +GLHD N  TT  D
Sbjct: 107 ILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSHFVTPNGLHDPNHYTTPYD 166

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +      ++I G KTG+T N  
Sbjct: 167 MAMITKGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSNFFENPYSIGG-KTGFT-NEA 223

Query: 250 FNIVTSLRYKD-DPIVAVVMGMPTS---QERDQKALELITSFLEKKTLK----HQQTHRK 301
            N +  L  KD + I++VVM        ++  Q A      F ++  L     HQ+T   
Sbjct: 224 RNTLVLLNEKDGNRIISVVMASQRPEIYEDLKQMADYSFGQFTKQTVLDKHNWHQKTTYL 283

Query: 302 DNLSSTSLKKS--LMIKK 317
           +   S+ L+KS  LM+KK
Sbjct: 284 NKDVSSELEKSAELMLKK 301


>gi|325663285|ref|ZP_08151735.1| hypothetical protein HMPREF0490_02476 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470739|gb|EGC73969.1| hypothetical protein HMPREF0490_02476 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 547

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 26/208 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ-SKKLHLNTQIPVSKTAAT 112
           S I++D+N   +   K  DE  +PAS+TK+MT  +  E  + + K+H   +   S     
Sbjct: 120 SGIIMDMNSGAILYAKNIDEKEFPASITKIMTALVALENSELTDKVHFTEE---SVAFLE 176

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              + + ++     T E  +  ++  SAN+VS A  + +      F  +M+ KA+++G  
Sbjct: 177 YGDASIGMQPGEEITMEDALYGMLLASANEVSYAIADTVGNGYDNFIRMMNEKAEELGCT 236

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR-----YRNRI---- 223
           NT + N  GLHD+    +ARD A++              F   +FR     Y +RI    
Sbjct: 237 NTHFTNPHGLHDEEHYVSARDMALIAAAA----------FQHEEFRKITNTYEHRIPPTN 286

Query: 224 ITNHNKLLNKMHNI--DGIKTGYTRNSG 249
           + N  ++  + H +  DG  T Y    G
Sbjct: 287 LVNEERVFQQYHQMLYDGTDTFYEPCVG 314


>gi|303230440|ref|ZP_07317201.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514979|gb|EFL56960.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 279

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 104/223 (46%), Gaps = 19/223 (8%)

Query: 57  IVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           ++ID  NK  +     D+  +PAS TKM+TL    E    K   L+    +S  A +   
Sbjct: 42  VLIDADNKEILFAKNPDKWMHPASTTKMVTLLTALEL---KGTQLDELATISPYATSMEE 98

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S L ++     T E  +  ++  S ND +    E +SGS + FA  M+  A K G +N++
Sbjct: 99  SNLGVQVGDQITLEGVLEGMMVASGNDAAVVVAENVSGSVENFAKDMNRIAAKAGAKNSV 158

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR------KFRYRNR----IIT 225
           + N  GL      +TARD A++     K     Y+ F  +      K  Y+NR    I T
Sbjct: 159 FLNPHGLTQMGHHSTARDLALIAAYGMK-----YQMFRDKVANDYYKVPYQNRAPETIRT 213

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            ++ + NK    +G+KTG+T  +G  ++ S       ++ V++
Sbjct: 214 TNHFIRNKYPGANGLKTGFTNAAGECLIASATRNGHTMIVVML 256


>gi|225575599|ref|ZP_03784209.1| hypothetical protein RUMHYD_03691 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037193|gb|EEG47439.1| hypothetical protein RUMHYD_03691 [Blautia hydrogenotrophica DSM
           10507]
          Length = 423

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 109/229 (47%), Gaps = 21/229 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D N   +   K    + YPAS+TK+MT       L  ++ + +  +  S  A T 
Sbjct: 77  SAVLMDANTGAILYSKNAHKKLYPASITKIMT-----TALAMQRCNPDDTVTFSDYAITH 131

Query: 114 ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
              + S +               A++  SAN+V+TA  E   G+ K F  LM+  A++IG
Sbjct: 132 QDVDSSNIGCLVGEQMKVSDCYRAIMLASANEVATAIAEQSCGNLKNFVELMNQTARQIG 191

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-------RNRI 223
              T + NA+GL DK+  TTA D A++     KN  Q+ K  +  ++           R+
Sbjct: 192 CTRTHFNNANGLPDKHHYTTAHDMALIARYAWKN-TQFRKVATTLEYTIEPTNLYTEPRV 250

Query: 224 ITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           + NH+K+++          G KTGYT+ +G  +VT  +     ++ VV+
Sbjct: 251 LYNHHKMMSNTGYYYEGCLGGKTGYTQAAGNTLVTYAKRGHMTLICVVL 299


>gi|229077103|ref|ZP_04209808.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock4-18]
 gi|228706203|gb|EEL58487.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock4-18]
          Length = 453

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 111/225 (49%), Gaps = 29/225 (12%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFT 127
           DE    AS+TKMM+ Y++ E +   KL  + ++ +S    K +  ++ S + L+    +T
Sbjct: 77  DESLAIASMTKMMSEYLVHEAMDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYT 136

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG------ 181
            ++   A+   SAN  + A  E I+G E  F  +M++K+K+ GM++  + NA+G      
Sbjct: 137 VKELYEAMAIYSANGATIALVEEIAGKEVNFVKMMNDKSKEFGMKHYKFVNATGLTNQDL 196

Query: 182 ---------LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----IITNH 227
                    L +KN++ +ARD AIL   L ++FP+      I K  ++        + N 
Sbjct: 197 KGYHPEGTTLDEKNKM-SARDCAILAQRLIQDFPKILDTAKIPKKTFQEGGKYPIDMANF 255

Query: 228 NKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N +L  +      +DG+KTG T  +G     ++      +++VV+
Sbjct: 256 NWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVI 300


>gi|238019958|ref|ZP_04600384.1| hypothetical protein VEIDISOL_01834 [Veillonella dispar ATCC 17748]
 gi|237863482|gb|EEP64772.1| hypothetical protein VEIDISOL_01834 [Veillonella dispar ATCC 17748]
          Length = 285

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 106/223 (47%), Gaps = 19/223 (8%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           ++ID +  ++   K  D+  +PAS TKM+TL      L+ K   L+    +S  A +   
Sbjct: 48  VLIDADTKEILFAKNPDKWMHPASTTKMVTL---LTALELKGTQLDELATISSYATSMEE 104

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S L ++     T E  +  ++  S ND +    E +SGS + FA  M+  A K G +N++
Sbjct: 105 SNLGVRVGDQITLEGVLEGMMVASGNDAAVVVAENVSGSVENFAKDMNRVAAKAGAKNSV 164

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR------KFRYRNR----IIT 225
           + N  GL      +TARD A++       +   Y+ F  +      K  Y+NR    I T
Sbjct: 165 FLNPHGLTQMGHHSTARDLAMIAA-----YGMKYQMFRDKVANDYYKVPYQNRTPETIRT 219

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            ++ + NK    +G+KTG+T  +G  ++ S       ++ V++
Sbjct: 220 TNHFIRNKYPGANGLKTGFTNAAGECLIASATRNGHTMIVVML 262


>gi|152975589|ref|YP_001375106.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024341|gb|ABS22111.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH
           391-98]
          Length = 337

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 128/258 (49%), Gaps = 23/258 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPAS-LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+ID +  ++   K +   +P+  L+K+MT YI+ E + +  L    ++ +   +   
Sbjct: 37  SAILIDADSGEIVYKKNETSPFPSGDLSKLMTEYILLERIHNGTLKWEDEVIIKDNSFHI 96

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM-Q 172
             + +    K+  T      A+     N  + A  E IS +E+ F  LM+ KA+++G+ +
Sbjct: 97  GANDIGTTVKSDITIRDLFHAVALTGNNRAALALAEHISTNEENFIKLMNEKARQLGLSK 156

Query: 173 NTIYKNASGLHDKNQI---TTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIITNH 227
           +T + N +G+ +K +     TA D + L   L  ++P   K  S+   +F +++  + N 
Sbjct: 157 DTYFINVTGVSNKQEQFSKITALDASKLARQLLYDYPTILKSSSMTSYQFIFKDIHVFNT 216

Query: 228 NKLLN------KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           N++L       K+ ++DG++T ++  +G++ V + + KD  +++VV+G            
Sbjct: 217 NRMLYSLDKNVKLKSVDGLQTSFSPTTGYSFVGTAKEKDRRLISVVLGAKGEN------- 269

Query: 282 ELITSFLEKKTLKHQQTH 299
              +SF+E K L +   H
Sbjct: 270 ---SSFIESKKLFNYGFH 284


>gi|312876048|ref|ZP_07736037.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797246|gb|EFR13586.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 451

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 116/248 (46%), Gaps = 29/248 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+++ +  Q+   K    R +PAS TK++T  +   Y       L+    VS  A   
Sbjct: 45  SAILVEAHTGQILFEKNPNLRCFPASTTKVLTALVAISYEHD----LSKIFKVSSKATMI 100

Query: 114 NP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            P  S  YL      + +  + A++  SAND +    E I+GS  +F   M+  AK IG 
Sbjct: 101 EPGSSSYYLNPGETISFQDLLYAMLLISANDAANVIAENIAGSIPEFVEKMNEYAKSIGA 160

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY--KYFSIRKFRYRN-------- 221
           +N+ + N +GLH     TTA D   L ++ R+ +      K FS  ++R           
Sbjct: 161 KNSHFVNPNGLHSPQHYTTAYD---LSLIARQAYQNEILKKIFSTVEYRITTASMHKKPD 217

Query: 222 -RIITNHNKLLNKMHN-----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
            +II N NKLL K          GIKTGYT  +   ++ S +  D  ++AV++   +S++
Sbjct: 218 WQIIYNINKLLRKNSQYYYPYATGIKTGYTAQAKRCLIASAKKNDIELIAVIL---SSED 274

Query: 276 RDQKALEL 283
               A++L
Sbjct: 275 AFSDAIKL 282


>gi|291544371|emb|CBL17480.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. 18P13]
          Length = 378

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 12/189 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE R  AS TK+MT  +  E        L+    V   A     S + L+E    T    
Sbjct: 52  DEKRPIASTTKIMTTLLCLE-----SGGLDDWFVVDPEAIRVEGSSMGLQEGDVVTKRML 106

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
              ++  S ND + A    ++GS  +FA LM+ +A +IGM +T +   SGL  +    + 
Sbjct: 107 CYGMLLPSGNDAANATAVRLAGSIPEFAKLMNARAARIGMTHTCFVTPSGLDAEGHGASV 166

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYR------NRIITNHNKLLNKMHNIDGIKTGYT 245
           RD  +L     +N P +    S  +          NR + N NKLL     + G+KTG+T
Sbjct: 167 RDMGLLARTAMQN-PDFRAICSQSRAEVCFGNPPYNRWLKNTNKLLTMYEGVVGVKTGFT 225

Query: 246 RNSGFNIVT 254
             +G  +V+
Sbjct: 226 DAAGRCLVS 234


>gi|229142132|ref|ZP_04270657.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
 gi|228641421|gb|EEK97727.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
          Length = 425

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ VS  A   ++N   S +  ++   +T
Sbjct: 55  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNVSDYAYEVSRNNEFSNVPFEKGRQYT 114

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 115 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 174

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 175 KGKHPEGTDPNAENSMSARD---MGILSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 229

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 230 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 289

Query: 280 ALELI 284
           + ELI
Sbjct: 290 SRELI 294


>gi|167751641|ref|ZP_02423768.1| hypothetical protein EUBSIR_02646 [Eubacterium siraeum DSM 15702]
 gi|167655449|gb|EDR99578.1| hypothetical protein EUBSIR_02646 [Eubacterium siraeum DSM 15702]
          Length = 390

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 100/220 (45%), Gaps = 16/220 (7%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
           + E R  AS TK+MT  +  E  +  K     +  V  TA     + + L+E    T   
Sbjct: 64  EKEHRQIASTTKIMTALLTLEAGEPDK-----EFEVDPTAIKVEGTSMGLREGDIVTRRA 118

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               ++  S ND + A    ISGS+  FA+LM+ +A++IGM +T +   SGL    Q + 
Sbjct: 119 LCYGMLLPSGNDAANAAAVNISGSKSAFAVLMNKRAEEIGMTDTNFVTPSGLDADGQYSC 178

Query: 191 ARDQAILGILLRK--NFPQYYKYFSIRKFRY------RNRIITNHNKLLNKMHNIDGIKT 242
           A D   L +L R+  N   + K   + K +        +RI+ N NKLL       G+KT
Sbjct: 179 AYD---LALLTREAMNNKDFAKICGLPKAKVSFGNPKSDRILVNSNKLLTSYDGCIGVKT 235

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           G+T ++   +V+        ++AV +  P       K L+
Sbjct: 236 GFTDSARRTLVSCAERDGVRLIAVTLNAPNDWSDHAKMLD 275


>gi|294786845|ref|ZP_06752099.1| serine-type D-Ala-D-Ala carboxypeptidase [Parascardovia denticolens
           F0305]
 gi|294485678|gb|EFG33312.1| serine-type D-Ala-D-Ala carboxypeptidase [Parascardovia denticolens
           F0305]
          Length = 430

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 109/246 (44%), Gaps = 33/246 (13%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP----SKLYLKEKTY 125
           DEP   AS+TK++TLY+ ++ +   KL  +T++ VS  +     NP    + +  +E   
Sbjct: 26  DEPAGIASMTKLITLYLTYKAVAQGKLTWSTKVHVSDYSYQVATNPLTTSADMSRRE--- 82

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
           FT    + A +  SAN  + +  E I GSE KF  LM  + +  G+ +    NASGL++ 
Sbjct: 83  FTVSDLVNAAMLPSANSAAISLAERIGGSEPKFVDLMRAQVRAWGITDARIYNASGLNNS 142

Query: 186 --------------NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
                             +A+D AI+   L  ++P         +  +  + I+  N +L
Sbjct: 143 FLGSNIYPGSSSKAENALSAKDMAIVAWHLIHDYPSILTISKKTQASFGGKTISTTNHML 202

Query: 232 NKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
                    +DG+KTG T  +G     +   K   ++AVV      Q+ D+   + +  F
Sbjct: 203 PGEEAAYPGVDGLKTGTTDEAGACFTATALVKGMRVIAVV------QKADKADADPLARF 256

Query: 288 LEKKTL 293
              KTL
Sbjct: 257 KAMKTL 262


>gi|218674624|ref|ZP_03524293.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli GR56]
          Length = 248

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%)

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           Y+ FS   F +R + +  HN L+ +   +DGI TGYT  SGFN+V+++R  +  +V VV+
Sbjct: 2   YRLFSAASFNFRGKTVRGHNNLMYRYQGMDGINTGYTNASGFNLVSAVRDGNRRVVGVVL 61

Query: 269 GMPTSQERDQKALELITSFLEKKT 292
           G  T++ RD K   L+  +L + +
Sbjct: 62  GGRTARSRDAKMAALLDRYLGRAS 85


>gi|312127682|ref|YP_003992556.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777701|gb|ADQ07187.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 451

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 105/226 (46%), Gaps = 28/226 (12%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP--SKLYLKEKTYFTTEQGIL 133
           +PAS TK++T  +   Y       LN    VS  A    P  S  YL      + +  + 
Sbjct: 67  FPASTTKVLTALVAISYEHD----LNKIFKVSSKATMIEPGSSSYYLNPGETISFQDLLY 122

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           A++  SAND +    E I+GS  +F   M+  AK IG +N+ + N +GLH     TTA D
Sbjct: 123 AMLLISANDAANVIAENIAGSIPEFVEKMNEYAKSIGAENSHFVNPNGLHSPQHYTTAYD 182

Query: 194 QAILGILLRKNFPQ--YYKYFSIRKFRYRN---------RIITNHNKLLNKMHN-----I 237
              L ++ R+ +      K FS  ++R            +II N NKLL K         
Sbjct: 183 ---LSLIARQAYQNEILRKIFSTVEYRITTASMHKKPEWQIIYNINKLLRKNSKYYYPYA 239

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            GIKTGYT  +   ++ S +  D  ++AV++   +S++    A++L
Sbjct: 240 TGIKTGYTAQAKRCLIASAKKDDIELIAVIL---SSEDAFSDAIKL 282


>gi|194467285|ref|ZP_03073272.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
           100-23]
 gi|194454321|gb|EDX43218.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
           100-23]
          Length = 403

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 120/246 (48%), Gaps = 34/246 (13%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAAT 112
           ++I+ D +  Q+   +  +   P AS+TK++T+ +I + +Q K+L  +TQ+ ++ + AA 
Sbjct: 32  AAIMADASTGQIIYKRNVDKALPVASITKLLTILVIEDEIQQKQLSWDTQVKITPEIAAI 91

Query: 113 QNP---SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            N    S + LK    ++    I A + +SA+  + A          +F + M  KAKKI
Sbjct: 92  SNDAAYSSIGLKSGQSYSVRTLINAALVKSADGATVALATATGDGTDEFNLKMMQKAKKI 151

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           GM  T   N+ GL + +                 +ARD AIL     K++P+  +  + +
Sbjct: 152 GMTKTNIVNSVGLDNGDMKSFKLADLPNNAANTMSARDVAILSQYFVKHYPELLQITAQK 211

Query: 216 KFRY---RNRIITNHNKLLNKM----------HNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           + ++   ++++ T  N  LNKM            IDG+KTG + ++G    ++ +Y+   
Sbjct: 212 EVKFQIAKDQVKTEKN--LNKMLPGEQYVVKGVTIDGLKTGTSDSAGACFASTGKYQGHR 269

Query: 263 IVAVVM 268
           I+ V++
Sbjct: 270 IITVIL 275


>gi|301051750|ref|YP_003789961.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis CI]
 gi|300373919|gb|ADK02823.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 435

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 27/222 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A   
Sbjct: 40  AAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKV 99

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +Q+ S   + L+    +T ++   A+   SAN  + A  E I+  E  F  +M++K+K++
Sbjct: 100 SQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIASKEVDFVKMMNDKSKEL 159

Query: 170 GMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQYYKYFSIR 215
           G++N  + N++GL +K+      + TT        A+D A L   L K++P+      I 
Sbjct: 160 GLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIP 219

Query: 216 KFRYRNR----IITNHNKLLNKM----HNIDGIKTGYTRNSG 249
           K  +R       ++N N +L  +      +DG+KTG T  +G
Sbjct: 220 KKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAG 261


>gi|229143980|ref|ZP_04272397.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
 gi|228639543|gb|EEK95956.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
          Length = 405

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 104/201 (51%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           YPAS TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 50  YPASTTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 104

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ KAK++G +++ +   +GLHD N  TT  D
Sbjct: 105 ILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSHFVTPNGLHDPNHYTTPYD 164

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +      ++I G KTG+T N  
Sbjct: 165 MAMITKGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSNFFENPYSIGG-KTGFT-NEA 221

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I++VVM 
Sbjct: 222 RNTLVLLNEKDGNRIISVVMA 242


>gi|294629898|ref|ZP_06708458.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14]
 gi|292833231|gb|EFF91580.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14]
          Length = 877

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 99/213 (46%), Gaps = 18/213 (8%)

Query: 59  IDVNK-NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           +DVN    M  F + +P    S+ K MT YII   L+   L    + P  K  AT     
Sbjct: 535 MDVNGVGTMDHFGEQKPAAIGSVAKTMTAYII---LRDHPLKPGEEGPKIKVDATAEKEG 591

Query: 118 LY----------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
            Y          +K   + T +Q + A++  SAN+++     + +GSE  F   M+  AK
Sbjct: 592 GYDKGGESTLNTVKAGDFLTEKQALSAVMIPSANNIARLLARWDAGSEAAFVEKMNATAK 651

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-RYRNRIITN 226
           ++GM  T Y + SGL +   ++TA+DQ  LG  + KN P      S   +     R   N
Sbjct: 652 ELGMTRTTYTDPSGLKE-TTVSTAQDQVKLGNAVVKN-PALVAITSAASWTDPSGRNWPN 709

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           +N L   +  I GIKTG T  +G N++ + R K
Sbjct: 710 YNSLPYWIGAI-GIKTGTTTAAGGNLLFAARKK 741


>gi|75763243|ref|ZP_00743000.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74489272|gb|EAO52731.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 448

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 120/244 (49%), Gaps = 31/244 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S    K 
Sbjct: 53  SAILIEANSGKILYQKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKI 112

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ 
Sbjct: 113 SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIAGKEGNFVKMMNDKSKEF 172

Query: 170 GMQNTIYKNASG---------------LHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           GM++  + N++G               L +KN++ +ARD AIL   L ++FP+      I
Sbjct: 173 GMKDYKFVNSTGLTNQDLKGYHLEGTTLDEKNKM-SARDCAILAQRLIQDFPKILNTAKI 231

Query: 215 RKFRYRNR-----IITNHNKLLNKM-----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
            K  ++        + N N +L          +DG+KTG T  +G     ++      ++
Sbjct: 232 PKKTFQEGGKYPIDMANFNWMLKXFXLXQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLI 291

Query: 265 AVVM 268
           +VV+
Sbjct: 292 SVVI 295


>gi|228994104|ref|ZP_04154004.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
           12442]
 gi|228765556|gb|EEM14210.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
           12442]
          Length = 425

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNP-SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   +  N  S +  ++   +T
Sbjct: 55  DELLAIASMSKLIVVYSVLEAIKEGKITWDTKVNISDYAYEISRNNEFSNVPFEKGLQYT 114

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
            ++   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 115 VKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 174

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL R    +Y +     K R+RN    NH K + +
Sbjct: 175 KGKHPEGTDPNGENSLSARD---MGILSRTIITKYPEILEDTKQRFRN-FPDNHPKPI-R 229

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    S +  D  +++V++   +  ER  +
Sbjct: 230 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTISAKRGDLRLISVIIKTKSMDERFTE 289

Query: 280 ALELI 284
           + ELI
Sbjct: 290 SRELI 294


>gi|229149576|ref|ZP_04277808.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
 gi|228633922|gb|EEK90519.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
          Length = 405

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 104/201 (51%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           YPAS TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 50  YPASTTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 104

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ KAK++G +++ +   +GLHD N  TT  D
Sbjct: 105 ILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSHFVTPNGLHDPNHYTTPYD 164

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +      ++I G KTG+T N  
Sbjct: 165 MAMITKGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSNFFENPYSIGG-KTGFT-NEA 221

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I++VVM 
Sbjct: 222 RNTLVLLNEKDGNRIISVVMA 242


>gi|222098861|ref|YP_002532919.1| d-alanyl-d-alanine carboxypeptidase, putative [Bacillus cereus Q1]
 gi|221242920|gb|ACM15630.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus Q1]
          Length = 423

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ VS  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNVSDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTNPNAENSMSARD---MGILSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|228951756|ref|ZP_04113856.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228957645|ref|ZP_04119393.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229043115|ref|ZP_04190843.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
 gi|229068926|ref|ZP_04202220.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
 gi|229078559|ref|ZP_04211118.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
 gi|229108831|ref|ZP_04238436.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
 gi|229126691|ref|ZP_04255703.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
 gi|228656631|gb|EEL12457.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
 gi|228674600|gb|EEL29839.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
 gi|228704784|gb|EEL57211.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
 gi|228714210|gb|EEL66091.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
 gi|228726254|gb|EEL77483.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
 gi|228802030|gb|EEM48899.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228807926|gb|EEM54445.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 405

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 104/201 (51%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           YPAS TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 50  YPASTTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 104

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ KAK++G +++ +   +GLHD N  TT  D
Sbjct: 105 ILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSHFVTPNGLHDPNHYTTPYD 164

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +      ++I G KTG+T N  
Sbjct: 165 MAMITKGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSNFFENPYSIGG-KTGFT-NEA 221

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I++VVM 
Sbjct: 222 RNTLVLLNEKDGNRIISVVMA 242


>gi|205371955|ref|ZP_03224774.1| D-alanine carboxypeptidase [Bacillus coahuilensis m4-4]
          Length = 453

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 105/219 (47%), Gaps = 28/219 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGIL 133
           AS+TKMMT +++ E +   ++  +  + VS    + +   + S + LK  + ++ ++   
Sbjct: 65  ASMTKMMTEFLLLEAISEGRVSFDQMVSVSDYGHRISQDTSLSNVPLKLDSQYSIKELYE 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN------- 186
           ++   SAN  +    E ++GSE  F  +M+ KA ++G++N  + N++GL++ +       
Sbjct: 125 SMAIYSANGATITIAEALAGSETNFVKMMNEKAAELGLENYKFVNSTGLNNADLLGQHPQ 184

Query: 187 -------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI------ITNHNKLLNK 233
                   + +A D A L   L   +P+  +  SI K  +R  I      + N N +L  
Sbjct: 185 GTGETEENVMSANDTATLAYELLTRYPEVLETASIPKLTFREGIADEQTNMDNWNWMLPS 244

Query: 234 M----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +      +DG+KTG T  +G +   + +  D   + VVM
Sbjct: 245 LVYGYEGMDGLKTGTTDFAGASFTGTAKRNDMRFITVVM 283


>gi|218231015|ref|YP_002366059.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           B4264]
 gi|218158972|gb|ACK58964.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus B4264]
          Length = 428

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 104/201 (51%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           YPAS TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 73  YPASTTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 127

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ KAK++G +++ +   +GLHD N  TT  D
Sbjct: 128 ILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSHFVTPNGLHDPNHYTTPYD 187

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +      ++I G KTG+T N  
Sbjct: 188 MAMITKGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSNFFENPYSIGG-KTGFT-NEA 244

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I++VVM 
Sbjct: 245 RNTLVLLNEKDGNRIISVVMA 265


>gi|206975818|ref|ZP_03236729.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           H3081.97]
 gi|217962879|ref|YP_002341457.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           AH187]
 gi|206745912|gb|EDZ57308.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           H3081.97]
 gi|217067221|gb|ACJ81471.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           AH187]
          Length = 423

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ VS  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNVSDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNAENSMSARD---MGILSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|325661590|ref|ZP_08150214.1| hypothetical protein HMPREF0490_00948 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472117|gb|EGC75331.1| hypothetical protein HMPREF0490_00948 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 323

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 66/120 (55%), Gaps = 7/120 (5%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT--QNPSKLYLKEKTYFTTEQGIL 133
           YPAS TK++T Y+  +Y      +L+  + VS+ A T   + S   L+E    T E  + 
Sbjct: 97  YPASTTKVLTAYVALKYG-----NLSDIVTVSRRAVTFDVDASVCGLQENDQITMEALLY 151

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  S ND + A  E ISGS + F  LM+ +A+K+G  NT + N  GLH+ +  TTA D
Sbjct: 152 GLLLHSGNDNAIAIAEHISGSVEAFVELMNEEARKLGATNTHFTNPHGLHEADHYTTAYD 211


>gi|30019428|ref|NP_831059.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
 gi|29894972|gb|AAP08260.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
          Length = 439

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 104/201 (51%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           YPAS TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 84  YPASTTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 138

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ KAK++G +++ +   +GLHD N  TT  D
Sbjct: 139 ILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSHFVTPNGLHDPNHYTTPYD 198

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +      ++I G KTG+T N  
Sbjct: 199 MAMITKGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSNFFENPYSIGG-KTGFT-NEA 255

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I++VVM 
Sbjct: 256 RNTLVLLNEKDGNRIISVVMA 276


>gi|331084851|ref|ZP_08333939.1| hypothetical protein HMPREF0987_00242 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410945|gb|EGG90367.1| hypothetical protein HMPREF0987_00242 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 323

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 66/120 (55%), Gaps = 7/120 (5%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT--QNPSKLYLKEKTYFTTEQGIL 133
           YPAS TK++T Y+  +Y      +L+  + VS+ A T   + S   L+E    T E  + 
Sbjct: 97  YPASTTKVLTAYVALKYG-----NLSDIVTVSRRAVTFDVDASVCGLQENDQITMEALLY 151

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  S ND + A  E ISGS + F  LM+ +A+K+G  NT + N  GLH+ +  TTA D
Sbjct: 152 GLLLHSGNDNAIAIAEHISGSVEAFVELMNEEARKLGATNTHFTNPHGLHEADHYTTAYD 211


>gi|296501957|ref|YP_003663657.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
 gi|296323009|gb|ADH05937.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
          Length = 428

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 104/201 (51%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           YPAS TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 73  YPASTTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 127

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ KAK++G +++ +   +GLHD N  TT  D
Sbjct: 128 ILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSHFVTPNGLHDPNHYTTPYD 187

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +      ++I G KTG+T N  
Sbjct: 188 MAMITKGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSNFFENPYSIGG-KTGFT-NEA 244

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I++VVM 
Sbjct: 245 RNTLVLLNEKDGNRIISVVMA 265


>gi|152973863|ref|YP_001373380.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152022615|gb|ABS20385.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH
           391-98]
          Length = 439

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 27/205 (13%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFT 127
           DE    AS+TKMM+ Y++ + + + KL  + +I VS    K +  ++ S + L+    +T
Sbjct: 61  DELLAIASMTKMMSEYLVHKAVDTGKLKWDQKIKVSEYAHKISQDRSLSNVPLENGGSYT 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
            ++   A+   SAN  + A  E ++G E  F  +M+++AK+ G++N  + N++GL +K+ 
Sbjct: 121 VKELYEAMAIYSANGATIALAEAVAGKEADFVKMMNDQAKEFGLKNYKFVNSTGLTNKDL 180

Query: 187 -----QITT--------ARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRI---ITNHN 228
                + TT        ARD AIL   L ++FP+      I K  F+   +    + N N
Sbjct: 181 KGQHPEGTTPDEENKMSARDVAILAQHLIQDFPKVLDTAKIPKKVFQEGGKYPVKMDNWN 240

Query: 229 KLLNKM----HNIDGIKTGYTRNSG 249
            +L  +      +DG+KTG T  +G
Sbjct: 241 WMLKGLIKQYEGVDGLKTGSTPEAG 265


>gi|188589932|ref|YP_001919969.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188500213|gb|ACD53349.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 438

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 107/214 (50%), Gaps = 21/214 (9%)

Query: 34  ILFLSIIMIS----MASELHAKPKYS---SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMT 85
           I FLSI ++S    MA+   A P+ +   S+++D +  ++   K  D+   PAS TK+MT
Sbjct: 9   IFFLSIFLVSSINVMAAS--APPEINAEGSVLMDASTGEILFSKNPDKVLEPASTTKVMT 66

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
             +  E        LN ++ V++     + + + L +    T +  +L L+  S ND + 
Sbjct: 67  AILTLE-----NCDLNEEVVVTEDFTKVDGTTIGLLKGDIVTVKDLLLGLLLESGNDAAN 121

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN- 204
           A    IS S  KFA+LM+ KA +IG  NT +KN SGL D   +TTA D A++     KN 
Sbjct: 122 ALACHISSSIDKFAVLMNKKAIEIGAINTHFKNPSGLPDPEHLTTAHDLALIMNEAIKND 181

Query: 205 -FPQYYKYFS----IRKFRYRNRIITNHNKLLNK 233
            F +  K  +    I+    R   I N N ++NK
Sbjct: 182 KFLELSKVMTYEIPIKNDSSRTIWINNKNHMINK 215


>gi|229029247|ref|ZP_04185338.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
 gi|228732060|gb|EEL82951.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
          Length = 366

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 104/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + E +  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 40  GKAEHESQKIASITKIMTALLAAESGKMKEM-----VSVSNEAVRVEGSAIYLKPGQKVK 94

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 95  LEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGS 154

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 155 HYSSAYDMALLTKYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 213

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 214 FTKKAGRTLVTTAS--KDGLDLIVVTLSASSDWDD 246


>gi|229160519|ref|ZP_04288514.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
 gi|228622929|gb|EEK79760.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
          Length = 362

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 104/215 (48%), Gaps = 12/215 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + E +  AS+TK+MT  +  E  + K++     + VS  A     S +YLK      
Sbjct: 36  GKAEHESQKIASITKIMTALLAAESGKMKEM-----VSVSNEAVRVEGSAIYLKPGQKVK 90

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 91  LEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGS 150

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 151 HYSSAYDMALLTKYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 209

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 210 FTKKAGRTLVTTAS--KDGLDLIVVTLSASSDWDD 242


>gi|229160328|ref|ZP_04288326.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
 gi|228623052|gb|EEK79880.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
          Length = 407

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 130/258 (50%), Gaps = 24/258 (9%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ--GIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S   ++ +   T ++   ++
Sbjct: 52  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETIDRNTALM 106

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ KAK++G  ++ +   +GLHD N  TT  D
Sbjct: 107 ILMVLSANDVSFAIAEHIGGSVENFANMMNEKAKQLGATDSHFVTPNGLHDPNHYTTPYD 166

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +      +++ G KTG+T N  
Sbjct: 167 MAMITRGVQK-YPEILQAMNTKRISVTTSRQTVSIFNKSTYFENPYSMGG-KTGFT-NEA 223

Query: 250 FNIVTSLRYKD-DPIVAVVMGMPTS---QERDQKALELITSFLEKKTLKHQQTHRK---- 301
            N +  L  KD + I+ VVM        ++  Q A      F+++  L  Q  H+K    
Sbjct: 224 RNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMAEYSFGQFVKQTVLDKQSWHQKTTYL 283

Query: 302 DNLSSTSLKKS--LMIKK 317
           +    + L+KS  LM+KK
Sbjct: 284 NKDIDSELEKSAELMLKK 301


>gi|166033039|ref|ZP_02235868.1| hypothetical protein DORFOR_02761 [Dorea formicigenerans ATCC
           27755]
 gi|166027396|gb|EDR46153.1| hypothetical protein DORFOR_02761 [Dorea formicigenerans ATCC
           27755]
          Length = 490

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 115/233 (49%), Gaps = 25/233 (10%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           + IV++V    +   K  D   YPAS+TK++T  +    L++ +L  N        A  Q
Sbjct: 90  AGIVMEVGTGAILYAKNIDAHEYPASITKVLTALVA---LENGQLTDNVTFSHDSVAFLQ 146

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI---SGSEKKFAI-LMSNKAKK 168
              S + LKE    T +Q + A++  SAN+ + A GE +   +G +  + I  M+++ K+
Sbjct: 147 RGDSSVGLKEGNVITLDQAMHAMLLASANEAAYAIGESVGVNAGHDYNWFIEQMNSRCKE 206

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY--------R 220
           +G +N+ + N +GLHD N  T ARD A++G  L K+ P++++   ++   Y         
Sbjct: 207 LGGENSNFANTNGLHDPNHYTCARDMALIGRELFKH-PEFFQI--VQTLNYTIPASETTE 263

Query: 221 NRIITNHNKLLNKMHN-----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +    +K+L   ++       G KTGYT ++   ++T        +V VV+
Sbjct: 264 EHVFHQKHKMLQPSNSNYYPYTIGGKTGYTSDALSTLITMADNGQTQLVCVVL 316


>gi|228969874|ref|ZP_04130604.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228789827|gb|EEM37679.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 374

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 109/219 (49%), Gaps = 29/219 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGIL 133
           AS+TKMM+ Y++ E +   KL  + ++ +S    K +  ++ S + L+    +T ++   
Sbjct: 4   ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 63

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG------------ 181
           A+   SAN  + A  E I+G E  F  +M++K+K+ GM++  + N++G            
Sbjct: 64  AMAIYSANGATIALVEEIAGKEGNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLE 123

Query: 182 ---LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----IITNHNKLLNK 233
              L +KN++ +ARD AIL   L ++FPQ      I K  ++        + N N +L  
Sbjct: 124 GTTLDEKNKM-SARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKG 182

Query: 234 M----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +      +DG+KTG T  +G     ++      +++VV+
Sbjct: 183 LIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVI 221


>gi|228920278|ref|ZP_04083626.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839477|gb|EEM84770.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 363

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 94/192 (48%), Gaps = 10/192 (5%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +     QS K+     + VS  A     S +YLK      
Sbjct: 37  GKAEHEPQKIASITKIMTALLA---AQSGKM--KEMVSVSNEAVRVEGSAIYLKPGQKVK 91

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS   F  LM+ KAK+IGM++T + N  GL  D +
Sbjct: 92  LEDLVYGLMLRSGNDAAQVIAESVGGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGS 151

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNI-DGIKTG 243
             ++A D A+L      N   + K F  + ++    +    N +KL+   +    G KTG
Sbjct: 152 HYSSAYDMALLTKYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTG 210

Query: 244 YTRNSGFNIVTS 255
           +T+ +G  +VT+
Sbjct: 211 FTKKAGRTLVTT 222


>gi|325571073|ref|ZP_08146645.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156158|gb|EGC68344.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus
           casseliflavus ATCC 12755]
          Length = 411

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 103/219 (47%), Gaps = 29/219 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGIL 133
           AS+TK+++LY++ E ++   +  +  +P+S  AA    + N S + L +   +T +    
Sbjct: 103 ASITKIISLYLVAEQVEQGTIAWDDPVPISDYAANLSVSPNLSNVPLHQDVTYTVKDLYD 162

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           A   +SAN    A  E I+GSE  F   M  K +  G+ +    NASGL+          
Sbjct: 163 ASYIQSANAAIVALAELIAGSESAFVDQMQEKVQSWGITDAKIVNASGLNNTYLGDNIYP 222

Query: 184 -----DKNQITTARDQAILGILLRKNFPQYYKY--FSIRKF---RYRNRIITNHNKLL-- 231
                D+N++ +A+D A++   L ++FP   +    S ++F    Y    + N N +L  
Sbjct: 223 GSTSTDENEL-SAKDVALIARHLLQDFPDVLEVTSLSTKQFGEGSYSPVEMVNWNWMLPG 281

Query: 232 --NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             N    +DG+KTG T  +G   V +       I+ VV+
Sbjct: 282 FTNTKDGVDGLKTGTTDMAGACFVGTAVKDGQRIITVVL 320


>gi|331086263|ref|ZP_08335343.1| hypothetical protein HMPREF0987_01646 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406029|gb|EGG85552.1| hypothetical protein HMPREF0987_01646 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 445

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 115/257 (44%), Gaps = 30/257 (11%)

Query: 55  SSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----T 109
            SI+ +++  Q+   + +D    PAS+TK+MT+ + ++ ++  K   + Q+ V++     
Sbjct: 60  GSIITEIHTGQILWEENKDVSWAPASMTKLMTILLAYDAMEEGKFEKDMQVAVNEKYTDI 119

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A     S   ++    +T  + I  +I  S+   +    + +     KF  LM+ KAK+I
Sbjct: 120 AGRYALSNNVMQMGATYTVGELIDLIIVPSSAAATYMLADLVEPDPDKFVALMNQKAKEI 179

Query: 170 GMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           GM +T Y N  G+               D + +T+ +D A+L     K +P    + S  
Sbjct: 180 GMTHTTYYNCVGVTNDLLYPYAPKNLPADADNVTSPQDYALLCSYFVKTYPDILTHTSSP 239

Query: 216 KF------RYRNRIITNHNKLLNKMHNI---DGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           +        Y     +    L    + +   DG+KTG +  +GFN  ++ + +D  +V +
Sbjct: 240 EIVVKEGTPYEEHFKSYQISLEGAKYGLKGTDGLKTGSSGRAGFNYSSTAKRQDTRLVEI 299

Query: 267 VMGMPTSQERDQKALEL 283
           VMG+  S   DQ   EL
Sbjct: 300 VMGV--SDWTDQTGEEL 314


>gi|257898083|ref|ZP_05677736.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium Com15]
 gi|257835995|gb|EEV61069.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium Com15]
          Length = 435

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 104/219 (47%), Gaps = 29/219 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGIL 133
           AS+TK++ LYI+ + ++  KL  + ++ +S  A     T + S + L ++  +T ++   
Sbjct: 64  ASITKIIGLYIVLDQVKEGKLSWDDKVSISDYAENLSVTPDLSNVPLHKENTYTVKELFD 123

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----------- 182
           + I +SAN    A  E ISGSE KF   M  + K   +++    NASGL           
Sbjct: 124 SAIIQSANASMVALAEKISGSEAKFTERMKEQLKDWDIKDATIVNASGLNNSYLGENRPE 183

Query: 183 ----HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL-- 231
               +D+NQ+ +A+D AI+   L  +FP+     S     +         + N N +L  
Sbjct: 184 GTGENDENQM-SAQDVAIVARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPG 242

Query: 232 --NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             N    +DG+KTG T  +G   V ++   D  I+ VV+
Sbjct: 243 FVNYKEGVDGLKTGTTELAGACFVGTITKNDQRIITVVL 281


>gi|229199512|ref|ZP_04326173.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
 gi|228583917|gb|EEK42074.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
          Length = 425

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 55  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 114

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 115 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 174

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 175 KGKHPEGTDPNAENSMSARD---MGILSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 229

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 230 MENWNWMLPGAAFAYEGADGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 289

Query: 280 ALELI 284
           + ELI
Sbjct: 290 SRELI 294


>gi|225568832|ref|ZP_03777857.1| hypothetical protein CLOHYLEM_04911 [Clostridium hylemonae DSM
           15053]
 gi|225162331|gb|EEG74950.1| hypothetical protein CLOHYLEM_04911 [Clostridium hylemonae DSM
           15053]
          Length = 348

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 106/220 (48%), Gaps = 28/220 (12%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D++  + + G   D+  YPASLTK+MT  +  E  +++ L     +P       Q
Sbjct: 92  SAVLVDLDTGKTIAGNNSDDTIYPASLTKIMTAILAVE--KTENLDEIITLPYD---FFQ 146

Query: 114 NPSKLYLKEKTYFTTEQG--------ILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           N   LY +E +    E G        +  ++  S  +   AF + I+GSE+ F  LM+ K
Sbjct: 147 N---LYAEEASMAGFEPGEAVCLRDLLYGILLPSGAECCLAFADKIAGSEEDFVKLMNKK 203

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAIL--GILLRKNFPQYYKY--FSIRK----- 216
           A+ +GM++T + N++GLHD    +T  D A+L    L   +F + +     S R      
Sbjct: 204 AEALGMEHTQFCNSTGLHDDEHYSTVEDLALLLKYALGNDDFREAFTASRHSTRPSAQHP 263

Query: 217 --FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
             F + + +  N +        I G KTGYT+ +G  + +
Sbjct: 264 GGFTFYSTMFENMSSAKVTGGEILGGKTGYTKEAGLCLAS 303


>gi|228988616|ref|ZP_04148702.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771067|gb|EEM19547.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 423

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNAENSMSARD---MGILSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|116332941|ref|YP_794468.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367]
 gi|116098288|gb|ABJ63437.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367]
          Length = 423

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 132/291 (45%), Gaps = 33/291 (11%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           S++ A+  Y   V+D    Q+   +    +YP ASL+K++T+Y+  + +   ++     +
Sbjct: 36  SKVAARAAY---VMDAQSGQVLYQQNANKKYPIASLSKLLTVYLTVKAINDGQIKWTDNV 92

Query: 105 PVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
           P+S    K + +   S L +K+   FT  Q + A +  S+N  +TA GE+++GS  KF  
Sbjct: 93  PMSQDLLKLSHSYTYSSLRMKKGESFTVRQLVAAAMIASSNSAATALGEYVAGSNAKFIQ 152

Query: 161 LMSNKAKKI----------GMQNTIYKN------ASGLHDKNQITTARDQAILGILLRKN 204
           LM+ +++            G+ NT  K+       +G  ++N + +A+   ++   L   
Sbjct: 153 LMNQQSRDWGIDAHFISSSGLDNTDLKDYHLVLAGTGKKEEN-LVSAKAITVVAQHLLAA 211

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRY 258
            P      S  +       I N N  L       K  +IDG+KTGYT N+      +   
Sbjct: 212 DPTITAVASKTQATINGTKIYNENSCLPGKSQYKKASHIDGLKTGYTENAKLCFTATYTV 271

Query: 259 KDDPIVAVVMGMPTSQERDQKAL-ELITSF-LEKKTLKHQQTHRKDNLSST 307
               ++A ++G  T+     K + +L  S+ LE   L  +Q    + L++T
Sbjct: 272 NGQRMIATILGGDTTFSAMNKLIKQLKQSYRLETTALTSRQIQLGNGLATT 322


>gi|294790789|ref|ZP_06755947.1| serine-type D-Ala-D-Ala carboxypeptidase [Scardovia inopinata
           F0304]
 gi|294458686|gb|EFG27039.1| serine-type D-Ala-D-Ala carboxypeptidase [Scardovia inopinata
           F0304]
          Length = 466

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 107/210 (50%), Gaps = 24/210 (11%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY----LKEKTYFT 127
           D P   AS+TK++TLY++++ +   K+  +T++P+S  ++  + + L     +K+K+Y T
Sbjct: 53  DRPAGIASMTKVITLYLVYKAIDQGKISWSTKVPISSYSSRISTNWLTTTVPMKKKSY-T 111

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---- 183
               + A   +SAN  + +  E I+GSE +F  +M  + ++ G+ +    N+SGL+    
Sbjct: 112 VRDLVTAAFVKSANSAAISLAEKIAGSEPRFVDMMRKQVRQWGITDAKLYNSSGLNNSFL 171

Query: 184 DKN----------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           DKN           + +ARD A+       ++PQ     S     +    +T+ + +L  
Sbjct: 172 DKNIYPGSSKKAENMMSARDIALAVWHFIHDYPQVLSMTSKAHATFDGMPLTSTDHMLPG 231

Query: 234 MHN----IDGIKTGYTRNSGFNI-VTSLRY 258
           +++    +DG KTG T  +G     T++R+
Sbjct: 232 LNSAYPGLDGFKTGTTEIAGACFAATAVRH 261


>gi|324329337|gb|ADY24597.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 423

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNAENSMSARD---MGILSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|229187618|ref|ZP_04314756.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
 gi|228595870|gb|EEK53552.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
          Length = 441

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 71  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 130

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 131 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 190

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 191 KGKHPEGTDPNAENSMSARD---MGILSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 245

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 246 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 305

Query: 280 ALELI 284
           + ELI
Sbjct: 306 SRELI 310


>gi|325263833|ref|ZP_08130566.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
 gi|324030871|gb|EGB92153.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
          Length = 425

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 116/260 (44%), Gaps = 37/260 (14%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY---PASLTKMMTLYIIFEYLQSKKLHLNTQIPVS---- 107
            SI++++N   +    Q+ P+    PAS++K+MT+ + ++ +Q  +  L+TQ+PV+    
Sbjct: 27  GSIIVEINTGHV--LWQENPQISWEPASMSKLMTILLAYDAIQEGEFSLDTQVPVTDKYL 84

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
             A   + S   +     +T  + I  +I  S+   +    + I     KF  L++ +A 
Sbjct: 85  DIAGRYSLSNNKMLAGASYTVAELIDLIIVPSSAAATYMLADLIEPDPDKFVTLLNERAS 144

Query: 168 KIGMQNTIYKNASG---------------LHDKNQITTARDQAILGILLRKNFPQYYKYF 212
            +GM+NT Y N  G               L D N +TT  D A+L     K +P    + 
Sbjct: 145 SLGMKNTRYYNPVGVPNELLVPYQPVNASLTDVN-VTTPEDYALLCCYFVKTYPDILNHT 203

Query: 213 SIRKF------RYRNRIITNHNKLLNKMHNI---DGIKTGYTRNSGFNIVTSLRYKDDPI 263
              K        Y  +  T    L    +++   DG+KTG  +N GFN  ++    +  +
Sbjct: 204 KHPKIVIKEGTPYEEKFDTYQYSLEGAKYSLKGTDGLKTGSNQN-GFNYSSTALRGNTRL 262

Query: 264 VAVVMGMPTSQERDQKALEL 283
           V +VMG+  S+  DQ   E+
Sbjct: 263 VEIVMGV--SKWEDQAGEEM 280


>gi|229158950|ref|ZP_04287007.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
 gi|228624561|gb|EEK81331.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
          Length = 423

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKSRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNAENSMSARD---MGILSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|325662481|ref|ZP_08151084.1| hypothetical protein HMPREF0490_01824 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471177|gb|EGC74402.1| hypothetical protein HMPREF0490_01824 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 451

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 115/257 (44%), Gaps = 30/257 (11%)

Query: 55  SSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----T 109
            SI+ +++  Q+   + +D    PAS+TK+MT+ + ++ ++  K   + Q+ V++     
Sbjct: 68  GSIITEIHTGQILWEENKDVSWAPASMTKLMTILLAYDAMEEGKFEKDMQVAVNEKYTDI 127

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A     S   ++    +T  + I  +I  S+   +    + +     KF  LM+ KAK+I
Sbjct: 128 AGRYALSNNVMQMGATYTVGELIDLIIVPSSAAATYMLADLVEPDPDKFVALMNQKAKEI 187

Query: 170 GMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           GM +T Y N  G+               D + +T+ +D A+L     K +P    + S  
Sbjct: 188 GMTHTTYYNCVGVTNDLLYPYAPKNLPADADNVTSPQDYALLCSYFVKTYPDILTHTSSP 247

Query: 216 KF------RYRNRIITNHNKLLNKMHNI---DGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           +        Y     +    L    + +   DG+KTG +  +GFN  ++ + +D  +V +
Sbjct: 248 EIVVKEGTPYEEHFKSYQISLEGAKYGLKGTDGLKTGSSGRAGFNYSSTAKRQDTRLVEI 307

Query: 267 VMGMPTSQERDQKALEL 283
           VMG+  S   DQ   EL
Sbjct: 308 VMGV--SDWTDQTGEEL 322


>gi|303234621|ref|ZP_07321255.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
           BVS033A4]
 gi|302494284|gb|EFL54056.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
           BVS033A4]
          Length = 289

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 25/217 (11%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPS--KLYLKEKTY 125
           D+  YPASLTKMMT+Y     ++      + + P+ K +      QN S    Y  E T 
Sbjct: 57  DKKVYPASLTKMMTVYTALGKIED----FDKKAPIDKKSYQKLVKQNASMAGFYGNEPTT 112

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
           F  E  +   +  SA + + +    +SGS++KF  LM+  AK +G+ NT +KN+ G+ + 
Sbjct: 113 F--EDLLYGTMLASAGECADSLAINVSGSKEKFVDLMNENAKNMGLNNTNFKNSEGMDED 170

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKMHN---- 236
           +  ++A+D A L     KN  ++YK F+  K+     +     I   + +L ++      
Sbjct: 171 DHYSSAKDMAFLLKNSLKN-EKFYKIFTTDKYTSTKTLDHPKGIEIESTVLGRLKEYEQD 229

Query: 237 ---IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
              I G K+G T  +G  + T     +   + +VMG+
Sbjct: 230 GFKIIGGKSGTTEKAGLCLATLSEKNNKKYIIIVMGV 266


>gi|228907005|ref|ZP_04070872.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           200]
 gi|228852753|gb|EEM97540.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           200]
          Length = 405

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 104/201 (51%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 50  FPASMTKVLTAILLMEHTKPED-----QFAFSQLALDQEKSNYQIEFQPGETINRNTALM 104

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ KAK++G +++ +   +GLHD N  TT  D
Sbjct: 105 ILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGARDSHFVTPNGLHDPNHYTTPYD 164

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +      ++I G KTG+T N  
Sbjct: 165 MAMITKGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSNFFENPYSIGG-KTGFT-NEA 221

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 222 RNTLVLLNEKDGNRIINVVMA 242


>gi|302380445|ref|ZP_07268913.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311756|gb|EFK93769.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
           ACS-171-V-Col3]
          Length = 289

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 25/217 (11%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPS--KLYLKEKTY 125
           D+  YPASLTKMMT+Y     ++      + + P+ K +      QN S    Y  E T 
Sbjct: 57  DKKVYPASLTKMMTVYTALGKIED----FDKKAPIDKKSYQKLVKQNASMAGFYGNEPTT 112

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
           F  E  +   +  SA + + +    +SGS++KF  LM+  AK +G+ NT +KN+ G+ + 
Sbjct: 113 F--EDLLYGTMLASAGECADSLAINVSGSKEKFVDLMNENAKNMGLNNTNFKNSEGMDED 170

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKMHN---- 236
           +  ++A+D A L     KN  ++YK F+  K+     +     I   + +L ++      
Sbjct: 171 DHYSSAKDMAFLLKNSLKN-EKFYKIFTTDKYTSTKTLDHPKGIEIESTVLGRLKEYEQD 229

Query: 237 ---IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
              I G K+G T  +G  + T     +   + +VMG+
Sbjct: 230 GFKIIGGKSGTTEKAGLCLATLSEKNNKKYIIIVMGV 266


>gi|254557717|ref|YP_003064134.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           JDM1]
 gi|254046644|gb|ACT63437.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           JDM1]
          Length = 444

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 125/281 (44%), Gaps = 41/281 (14%)

Query: 28  IQLMGKILF----LSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPAS 79
           I L+  + F    L I    + ++  + P  S+   I +D +  Q+   K   +P   AS
Sbjct: 12  IALVAAVTFSTAGLGIAGADLQAQAASTPSISAKAAIAVDASTGQILYDKNSSKPMAIAS 71

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-----LKEKTYFTTEQGILA 134
           +TKM++ Y++ + +   KL  N +I VSK  A  + +  Y     L  KTY +  Q   A
Sbjct: 72  MTKMLSTYLVLKAIHEDKLSWNQKISVSKAVAKMSQNTEYANVPLLSTKTY-SVRQLYNA 130

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT---- 190
               SAN   TA G+ ++G+  KF  LM   AK  G+ +    NASGL +K   +T    
Sbjct: 131 TEIYSANAAITALGDAVAGTPHKFVSLMRKTAKSWGITDATIINASGLTNKEVGSTIGYS 190

Query: 191 -----------ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM 234
                      A+D A +   L  ++P+  K  SI    +         + N N +L  +
Sbjct: 191 NVAASAENEMSAQDVATVAQKLLSDYPEVLKTSSIAHAWFEKGTSSATKMDNRNYMLKGL 250

Query: 235 HN------IDGIKTGYTRNSGFNIVTSLRYKD-DPIVAVVM 268
                   +DG+KTG +  +G     ++++ + + I+ VVM
Sbjct: 251 VKHYSALPVDGLKTGTSTKAGNAFTGTVKFSNGNRIITVVM 291


>gi|257784553|ref|YP_003179770.1| Serine-type D-Ala-D-Ala carboxypeptidase [Atopobium parvulum DSM
           20469]
 gi|257473060|gb|ACV51179.1| Serine-type D-Ala-D-Ala carboxypeptidase [Atopobium parvulum DSM
           20469]
          Length = 407

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 106/232 (45%), Gaps = 10/232 (4%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++IV D   N +     D+    AS+TK+MT  +  +      ++L+    ++     + 
Sbjct: 64  TAIVTDSQGNVLWSKNPDQELPMASITKVMTAIVALD----SGVNLDEPCKITVPDLEEG 119

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
                L      T  Q I+ ++  SAND +      +SGS++ FA  M+ KA +IGM +T
Sbjct: 120 SQVAGLTSDDTPTLRQLIMMMLVYSANDAAYNIAINVSGSQQAFADQMNKKAAEIGMTHT 179

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNKL 230
            ++N  GL      +TARD A++G   R+++P        R +        R   + + L
Sbjct: 180 QFQNPHGLDADGHYSTARDLALMGRYAREHYPLIASAVHTRSYTTTVGGEQRTFHSTDDL 239

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-DQKAL 281
           ++    + GIKTG   +SG   + + +  +  +   V+G  T Q R D  A+
Sbjct: 240 MDTYRGLLGIKTG-AEDSGTAFLGASKRGNITLYTCVLGCETIQGRFDDTAI 290


>gi|226951746|ref|ZP_03822210.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter sp. ATCC
           27244]
 gi|294648989|ref|ZP_06726437.1| D-alanyl-D-alanine endopeptidase [Acinetobacter haemolyticus ATCC
           19194]
 gi|226837536|gb|EEH69919.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter sp. ATCC
           27244]
 gi|292825124|gb|EFF83879.1| D-alanyl-D-alanine endopeptidase [Acinetobacter haemolyticus ATCC
           19194]
          Length = 354

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 115/247 (46%), Gaps = 29/247 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----T 109
           +++V+D    ++   K      P AS+TK+MT  +  +     +L+++ ++ + +     
Sbjct: 112 AALVMDAQTGEVLFSKNTNTALPIASITKVMTAVVTAD----ARLNMSEEVTLQQIDFAG 167

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A  +N S       +    E  + AL+ +S N  + A      G    F   M++KAK++
Sbjct: 168 AGGKNSSSTLRAGDSMNRAELLLFALM-KSENPAAAALARTYPGGRTAFYAAMNSKAKQL 226

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR----------Y 219
           GM  T +  ++GLH  N +++ARD   LGIL+        +Y  IR+F           Y
Sbjct: 227 GMTATHFIESTGLHPGN-VSSARD---LGILVSA----ASQYGLIRQFSTTPTYDFNLGY 278

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           R     N N L+ N   NI+  KTGY   +G  +V        P V V++G P++Q R+ 
Sbjct: 279 RVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVVVLLGAPSTQARNS 338

Query: 279 KALELIT 285
            A  L+T
Sbjct: 339 DATNLLT 345


>gi|118480420|ref|YP_897571.1| D-alanyl-D-alanine carboxypeptidase A [Bacillus thuringiensis str.
           Al Hakam]
 gi|118419645|gb|ABK88064.1| D-Ala-D-Ala carboxypeptidase A, Serine peptidase, MEROPS family S11
           [Bacillus thuringiensis str. Al Hakam]
          Length = 441

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 71  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 130

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 131 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 190

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 191 KGKHPEGTDPNAENSMSARD---MGILSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 245

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 246 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 305

Query: 280 ALELI 284
           + ELI
Sbjct: 306 SRELI 310


>gi|42784563|ref|NP_981810.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus ATCC
           10987]
 gi|42740495|gb|AAS44418.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus ATCC
           10987]
          Length = 423

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNAENSMSARD---MGILSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|313890351|ref|ZP_07823983.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121337|gb|EFR44444.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 390

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 151/334 (45%), Gaps = 60/334 (17%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS 107
           KPK SSIV+D +   +    QD     R PAS++K+ TLY++FE L   K+ L+T+I  S
Sbjct: 45  KPK-SSIVVDASNGDI--LWQDNALTVRDPASMSKVFTLYLLFEDLAKGKITLDTKITAS 101

Query: 108 KTAATQNPSKLY--LKEKTYFTTEQGILALITR----SANDVSTAFGEFIS-GSEKKFAI 160
            T   Q+ SK+Y     K     +  I  LIT     S+N  +     ++S  +   F  
Sbjct: 102 DT--DQSISKIYEISNNKIVAGVDYPIRDLITMIAVPSSNAATVMVANYLSQNNSSAFLD 159

Query: 161 LMSNKAKKIGMQNTIYKNASGL-------------HDKN--QITTARDQAILGILLRKNF 205
            ++N AK++GM +T + NA G              +DK+   +T+A D AIL     K +
Sbjct: 160 RINNTAKRLGMLDTHFNNAGGAVAEAFNGYYNPKNYDKSAPNLTSAHDLAILVYHFLKKY 219

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLNK-----------MHNIDGIKTGYTRNSGFNIVT 254
           P    Y    K   +  + T + +  +            +  +DG+KTG + ++ FN + 
Sbjct: 220 PDIVTY--TNKSIVKTMVGTPYEETFHSYNYSLPGDKYGLKGVDGLKTGSSPSAAFNAMV 277

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALE--LITSFLEK--KTLKHQQTHRKDNL------ 304
           + +     ++ +VMG+    ++D +        +  E+  K LK+ +T ++ NL      
Sbjct: 278 TAKRGKARVITIVMGVGDWTDQDGEFYRHPFANALTEEGFKILKNGKTQKQANLFPNNKI 337

Query: 305 ----SSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
               SS S K++   KK+     QF+      HS
Sbjct: 338 HTKGSSYSYKEN---KKVATLIDQFESFVDHHHS 368


>gi|328954968|ref|YP_004372301.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Coriobacterium
           glomerans PW2]
 gi|328455292|gb|AEB06486.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Coriobacterium
           glomerans PW2]
          Length = 452

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 106/230 (46%), Gaps = 26/230 (11%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MT  +   +   KK   +  I V + AAT   +  +L+E    + E  +  L+ 
Sbjct: 93  ASITKVMTALVALSH--GKK---SETIAVDRAAATVGEASAHLREGDALSLEDALRCLLI 147

Query: 138 RSAND----VSTAFGEFI----SGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----DK 185
            S ND    ++TA G  I    S  +  F   M+ KAK++G   T + N  GL       
Sbjct: 148 PSGNDAALAIATAIGSEIDPTSSDPDGVFVNAMNEKAKQLGCTGTNFTNPHGLDMDPWAG 207

Query: 186 NQITTARDQAIL-GILLRKN-----FPQYYKYFSIRKFRYRNRI--ITNHNKLLNKMHNI 237
           +  +TARD AI+    +R +             ++R     +R   +++ N++LN   NI
Sbjct: 208 DMHSTARDVAIMVAAAMRDDTFRSIVGTGAARVTVRSADGASRTLELSDVNQMLNAQGNI 267

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
            G+KTG T  +G+    +     + +  VV+G  TSQ+R   +  L T +
Sbjct: 268 -GVKTGTTDEAGYCFAGAFSRDGNEVYTVVLGANTSQQRFDDSASLATWY 316


>gi|291459956|ref|ZP_06599346.1| serine-type D-Ala-D-Ala carboxypeptidase [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291417297|gb|EFE91016.1| serine-type D-Ala-D-Ala carboxypeptidase [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 509

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 112/233 (48%), Gaps = 20/233 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+ ++D +   +   K  E R YPAS+TK+MT  ++      K  +L  Q+  S  A   
Sbjct: 45  SAALMDADTGAVLFEKNGEQRMYPASITKVMTALVVL-----KHANLEDQVSFSHDAVYN 99

Query: 114 ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S   + E    T    + AL+ +SAN+ + A  E ++GS +KFA +M+ +A  +G
Sbjct: 100 VDYGSSNAQIDEGDVLTVSDCLHALLLKSANEAANALAEHVAGSREKFAEMMNEEAAALG 159

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILG--ILLRKNF--PQYYKYFSIRKFRYRNRIIT- 225
              T + N SGL  ++  TTA D A++G      K F   +  K ++++  R     IT 
Sbjct: 160 CSGTHFSNPSGLFSEDHYTTAHDMALIGQAAFRDKRFLDIEKEKSYTLKGCRRNPEGITI 219

Query: 226 --NHNKLLNKMHNID----GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
              H  LL      D      KTG+T+++G  ++T  +     ++AVV+G  T
Sbjct: 220 YMEHKMLLQNSPYYDERVVAGKTGFTKDAGNTLLTLAQSGKRRLIAVVLGDKT 272


>gi|228918002|ref|ZP_04081534.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841667|gb|EEM86779.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 423

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPKGTDPNAENSMSARD---MGILSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|196041013|ref|ZP_03108310.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           NVH0597-99]
 gi|196028181|gb|EDX66791.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           NVH0597-99]
          Length = 423

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNAENSMSARD---MGILSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|291528948|emb|CBK94534.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale M104/1]
          Length = 371

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 16/191 (8%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK++T  +  E     K  +N  + +S+ AA+Q   KL L     +  +  +  ++ 
Sbjct: 96  ASTTKILTCIVALE-----KADINDTVTISQNAASQPEVKLGLVAGNSYNMKDLLYGMML 150

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI----TTARD 193
            S ND + A  E + GS + FA LM+ KA +IG   T +   +GL  +N I    +TA D
Sbjct: 151 ESFNDCAYAIAEHVGGSTEGFAKLMNEKANEIGCLGTYFITPNGLDAENDISFHHSTAGD 210

Query: 194 QAILGILLRKNFPQYYKYFSIR---KFRYRNR----IITNHNKLLNKMHNIDGIKTGYTR 246
             ++        P+  ++  I    ++ +  +    + +NHN+LL +       KTG+T 
Sbjct: 211 LCVIMSYCAWKSPKSTQFLEITQTMQYTFETKEGQMVFSNHNRLLKETDYCISGKTGFTT 270

Query: 247 NSGFNIVTSLR 257
            +G+  V ++ 
Sbjct: 271 KAGYCYVAAVE 281


>gi|47570508|ref|ZP_00241136.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
 gi|47552816|gb|EAL11239.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
          Length = 423

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNAENSMSARD---MGILSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|225026550|ref|ZP_03715742.1| hypothetical protein EUBHAL_00799 [Eubacterium hallii DSM 3353]
 gi|224956099|gb|EEG37308.1| hypothetical protein EUBHAL_00799 [Eubacterium hallii DSM 3353]
          Length = 491

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 116/236 (49%), Gaps = 34/236 (14%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D N    + G + D  RYPAS+TK+MT  +  E  +   +   +   V+   A  
Sbjct: 82  SAVVMDANTGTILYGKEADTKRYPASITKVMTALLAVENCKMSDVITYSNAAVNGIEAGS 141

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           + + + +  K   T E  + AL+  SAN+ + A  E ISGS  +FA LM+ +AK++G  N
Sbjct: 142 STAGINVGAK--LTVEDSLYALMLVSANEAAAAIAEHISGSTTEFAKLMTKRAKELGCTN 199

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT-------- 225
           T +KN  GL ++   TTA D   +G++L++            +FR  +  I+        
Sbjct: 200 TQFKNPHGLPNEEHYTTAHD---MGLILKEAMKH-------EEFRKISGTISYTLKKSDT 249

Query: 226 --------NHNKLLNKMHN-----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                   NH K+L +  +      +G KTG+T+ +   +VT  +  +  ++ V++
Sbjct: 250 LKDTLELWNHAKILRENSDYYYKYAEGAKTGFTQVALNTLVTYAKKDNVELICVIL 305


>gi|229094501|ref|ZP_04225570.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
 gi|229124894|ref|ZP_04254070.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
 gi|228658524|gb|EEL14188.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
 gi|228688885|gb|EEL42715.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
          Length = 441

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 71  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 130

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 131 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 190

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 191 KGKHPEGTDPNAENSMSARD---MGILSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 245

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 246 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 305

Query: 280 ALELI 284
           + ELI
Sbjct: 306 SRELI 310


>gi|301056857|ref|YP_003795068.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis CI]
 gi|300379026|gb|ADK07930.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 423

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNAENSMSARD---MGILSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|218906570|ref|YP_002454404.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           AH820]
 gi|300117906|ref|ZP_07055673.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus SJ1]
 gi|218534840|gb|ACK87238.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           AH820]
 gi|298724770|gb|EFI65445.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus SJ1]
          Length = 423

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNAENSMSARD---MGILSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|21910291|ref|NP_664559.1| putative D,D-carboxypeptidase, penicillin-binding protein
           [Streptococcus pyogenes MGAS315]
 gi|28895868|ref|NP_802218.1| D,D-carboxypeptidase, penicillin-binding protein [Streptococcus
           pyogenes SSI-1]
 gi|21904486|gb|AAM79362.1| putative D,D-carboxypeptidase, penicillin-binding protein
           [Streptococcus pyogenes MGAS315]
 gi|28811118|dbj|BAC64051.1| putative D,D-carboxypeptidase, penicillin-binding protein
           [Streptococcus pyogenes SSI-1]
          Length = 415

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 124/252 (49%), Gaps = 33/252 (13%)

Query: 34  ILFLSIIMIS------MASELHAKPKYSSIVIDVNKNQMTGFKQDE--PRYPASLTKMMT 85
           ILF  ++  S      +A++  A  +++ IV++ +  ++  +++D   P   ASLTK++T
Sbjct: 11  ILFFVVLTCSGLSKIVLAADFQAGAEHA-IVVEADSGRVL-YEKDAKTPDAIASLTKLVT 68

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
            Y++ + ++S +L L+ Q+ +S  A      ++ S +   +KTY + +  + A +  S+N
Sbjct: 69  AYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDKKTY-SVQDLLTATLVASSN 127

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQ 187
             + A  E ++GSE  F   M  +    G+ +    NASGL               ++  
Sbjct: 128 SAAIALAEKVAGSEPHFVNQMREQLSHWGITSGKILNASGLPNEVLKDHRYPGSALEEEN 187

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTG 243
             +A+D A++ + L ++FP+  +     +  +    I + N+LL  M      +DG+KTG
Sbjct: 188 TLSAQDVAVVTMHLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMAKGRAGVDGLKTG 247

Query: 244 YTRNSGFNIVTS 255
            T  +G  +V +
Sbjct: 248 TTDLAGHCLVVT 259


>gi|49481295|ref|YP_039380.1| D-alanyl-D-alanine carboxypeptidase (serine-type D-Ala-D-Ala
           carboxypeptidase) [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|228930397|ref|ZP_04093398.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228949115|ref|ZP_04111385.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|49332851|gb|AAT63497.1| D-alanyl-D-alanine carboxypeptidase (serine-type D-Ala-D-Ala
           carboxypeptidase) [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|228810556|gb|EEM56907.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228829244|gb|EEM74880.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 423

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNAENSMSARD---MGILSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|291524730|emb|CBK90317.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale DSM 17629]
          Length = 371

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 16/191 (8%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK++T  +  E     K  +N  + +S+ AA+Q   KL L     +  +  +  ++ 
Sbjct: 96  ASTTKILTCIVALE-----KADINDTVTISQNAASQPEVKLGLVAGNSYNMKDLLYGMML 150

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI----TTARD 193
            S ND + A  E + GS + FA LM+ KA +IG   T +   +GL  +N I    +TA D
Sbjct: 151 ESFNDCAYAIAEHVGGSTEGFAKLMNEKANEIGCLGTYFITPNGLDAENDISFHHSTAGD 210

Query: 194 QAILGILLRKNFPQYYKYFSIR---KFRYRNR----IITNHNKLLNKMHNIDGIKTGYTR 246
             ++        P+  ++  I    ++ +  +    + +NHN+LL +       KTG+T 
Sbjct: 211 LCVIMSYCAWKSPKSTQFLEITQTMQYTFETKEGQMVFSNHNRLLTETDYCISGKTGFTT 270

Query: 247 NSGFNIVTSLR 257
            +G+  V ++ 
Sbjct: 271 KAGYCYVAAVE 281


>gi|65317369|ref|ZP_00390328.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A2012]
          Length = 441

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 71  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 130

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 131 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNTDL 190

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 191 KGKHPEGTDPNAENSMSARD---MGILSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 245

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 246 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 305

Query: 280 ALELI 284
           + ELI
Sbjct: 306 SRELI 310


>gi|196045526|ref|ZP_03112757.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           03BB108]
 gi|225867373|ref|YP_002752751.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           03BB102]
 gi|196023733|gb|EDX62409.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           03BB108]
 gi|225787013|gb|ACO27230.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           03BB102]
          Length = 423

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNAENSMSARD---MGILSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|28379575|ref|NP_786467.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           WCFS1]
 gi|28272415|emb|CAD65338.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           WCFS1]
          Length = 444

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 125/281 (44%), Gaps = 41/281 (14%)

Query: 28  IQLMGKILF----LSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPAS 79
           I L+  + F    L I    + ++  + P  S+   I +D +  Q+   K   +P   AS
Sbjct: 12  IALVAAVTFSTGGLGIAGADLQAQAASTPSISAKAAIAVDASTGQILYDKNSSKPMAIAS 71

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-----LKEKTYFTTEQGILA 134
           +TKM++ Y++ + +   KL  N +I VSK  A  + +  Y     L  KTY +  Q   A
Sbjct: 72  MTKMLSTYLVLKAIHEGKLSWNQKISVSKAVAKMSQNTEYANVPLLSTKTY-SVRQLYNA 130

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT---- 190
               SAN   TA G+ ++G+  KF  LM   AK  G+ +    NASGL +K   +T    
Sbjct: 131 TEIYSANAAITALGDAVAGTPHKFVSLMRKTAKSWGITDATIINASGLTNKEVGSTIGYS 190

Query: 191 -----------ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM 234
                      A+D A +   L  ++P+  K  SI    +         + N N +L  +
Sbjct: 191 NVAASAENEMSAQDVATVAQKLLSDYPEVLKTSSIAHAWFEKGTSSATKMDNRNYMLKGL 250

Query: 235 HN------IDGIKTGYTRNSGFNIVTSLRYKD-DPIVAVVM 268
                   +DG+KTG +  +G     ++++ + + I+ VVM
Sbjct: 251 VKHYSALPVDGLKTGTSTKAGNAFTGTVKFSNGNRIITVVM 291


>gi|300769513|ref|ZP_07079399.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308181803|ref|YP_003925931.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|300492928|gb|EFK28110.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308047294|gb|ADN99837.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 444

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 125/281 (44%), Gaps = 41/281 (14%)

Query: 28  IQLMGKILF----LSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPAS 79
           I L+  + F    L I    + ++  + P  S+   I +D +  Q+   K   +P   AS
Sbjct: 12  IALVAAVTFSTAGLGIAGADLQAQAASTPSISAKAAIAVDASTGQILYDKNSSKPMAIAS 71

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-----LKEKTYFTTEQGILA 134
           +TKM++ Y++ + +   KL  N +I VSK  A  + +  Y     L  KTY +  Q   A
Sbjct: 72  MTKMLSTYLVLKAIHEGKLSWNQKISVSKAVAKMSQNTEYANVPLLSTKTY-SVRQLYNA 130

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT---- 190
               SAN   TA G+ ++G+  KF  LM   AK  G+ +    NASGL +K   +T    
Sbjct: 131 TEIYSANAAITALGDAVAGTPHKFVSLMRKTAKSWGITDATIINASGLTNKEVGSTIGYS 190

Query: 191 -----------ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM 234
                      A+D A +   L  ++P+  K  SI    +         + N N +L  +
Sbjct: 191 NVAASAENEMSAQDVATVAQKLLSDYPEVLKTSSIAHAWFEKGTSSATKMDNRNYMLKGL 250

Query: 235 HN------IDGIKTGYTRNSGFNIVTSLRYKD-DPIVAVVM 268
                   +DG+KTG +  +G     ++++ + + I+ VVM
Sbjct: 251 VKHYSALPVDGLKTGTSTKAGNAFTGTVKFSNGNRIITVVM 291


>gi|28210687|ref|NP_781631.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88]
 gi|28203125|gb|AAO35568.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88]
          Length = 419

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 104/220 (47%), Gaps = 8/220 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I +D++  ++   K  D+  YPAS TK++T  ++ E          T+    +   + 
Sbjct: 37  SAITLDMDTGEIIYAKSPDDKMYPASTTKLITSLLLAENKNKDDDLTYTKDAKDQPEYSL 96

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           N +   +           +  L+  S NDV+   G+ I G+ + FA LM+ KAK + ++N
Sbjct: 97  NKNLHAISVGETMKASDAMDGLLLYSGNDVAYLIGDNIGGNREGFAKLMNEKAKSLNLKN 156

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHN 228
           + + N +GLH K+  TT+ D +ILG    KN P        K  S+   +    +I N N
Sbjct: 157 SNFVNPNGLHHKDHYTTSYDLSILGRAAYKN-PWVSETMAKKNSSVSTSKGTTFLIENRN 215

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KL+     + G KTGYT  +G  +V         I+ VV+
Sbjct: 216 KLVGSKGCVGG-KTGYTSAAGRCLVAIFDRDGRKILGVVL 254


>gi|30265411|ref|NP_847788.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus anthracis
           str. Ames]
 gi|47530965|ref|YP_022314.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188225|ref|YP_031478.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
           Sterne]
 gi|165871278|ref|ZP_02215927.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A0488]
 gi|167635722|ref|ZP_02394032.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A0442]
 gi|170688221|ref|ZP_02879432.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A0465]
 gi|170708041|ref|ZP_02898489.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A0389]
 gi|190568901|ref|ZP_03021803.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           Tsiankovskii-I]
 gi|227818157|ref|YP_002818166.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. CDC 684]
 gi|229601349|ref|YP_002869603.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A0248]
 gi|254687169|ref|ZP_05151027.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. CNEVA-9066]
 gi|254724048|ref|ZP_05185833.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A1055]
 gi|254742225|ref|ZP_05199912.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. Kruger B]
 gi|254755864|ref|ZP_05207896.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. Vollum]
 gi|254761576|ref|ZP_05213596.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. Australia 94]
 gi|30260089|gb|AAP29274.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. Ames]
 gi|47506113|gb|AAT34789.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49182152|gb|AAT57528.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus anthracis
           str. Sterne]
 gi|164712945|gb|EDR18473.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A0488]
 gi|167528831|gb|EDR91588.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A0442]
 gi|170127014|gb|EDS95893.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A0389]
 gi|170667914|gb|EDT18666.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A0465]
 gi|190559968|gb|EDV13951.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           Tsiankovskii-I]
 gi|227006453|gb|ACP16196.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. CDC 684]
 gi|229265757|gb|ACQ47394.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A0248]
          Length = 423

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNTDL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNAENSMSARD---MGILSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|27466953|ref|NP_763590.1| penicillin binding protein 4 [Staphylococcus epidermidis ATCC
           12228]
 gi|27314495|gb|AAO03632.1|AE016744_35 penicillin binding protein 4 [Staphylococcus epidermidis ATCC
           12228]
          Length = 407

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 101/221 (45%), Gaps = 23/221 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTA 110
            ++V   N   +  + +D+   PAS TK+MT+ +I++ +   K+ L  ++ +S    K +
Sbjct: 39  GAVVTTTNGQILYKYHKDKKVDPASTTKLMTMLVIYDDINHSKVSLKDKVKISERYQKMS 98

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
              N +   LK+   +T EQ +      S+N  +    E I G   KF   M+ +A+ +G
Sbjct: 99  QLPNLTTFPLKKGQTYTIEQLLKQAALNSSNAATLVLAEHIDGDISKFTDRMNREAQLLG 158

Query: 171 MQNTIYKNASGLHDK--------------NQITTARDQAILGILLRKNFPQYYKYFSIRK 216
           M  T + N SG ++K              +  TTA D AIL   L + +P   K   +  
Sbjct: 159 MNQTHFTNPSGANNKIIKPYEPKKYKDETSSYTTANDMAILTNHLLRKYPNILKMTQLET 218

Query: 217 FRYRNRIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIV 253
               N+ + N N  L      M N+DG+KTG T   G+N+ 
Sbjct: 219 DTQYNQQLHNTNLSLPHQSLGMKNVDGLKTG-TSKEGYNLA 258


>gi|148545048|ref|YP_001272418.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri DSM
           20016]
 gi|184154381|ref|YP_001842722.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus reuteri JCM
           1112]
 gi|227364195|ref|ZP_03848291.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
           MM2-3]
 gi|325683399|ref|ZP_08162915.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein
           [Lactobacillus reuteri MM4-1A]
 gi|148532082|gb|ABQ84081.1| D-Ala-D-Ala carboxypeptidase A, Serine peptidase, MEROPS family S11
           [Lactobacillus reuteri DSM 20016]
 gi|183225725|dbj|BAG26242.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus reuteri JCM
           1112]
 gi|227070740|gb|EEI09067.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
           MM2-3]
 gi|324977749|gb|EGC14700.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein
           [Lactobacillus reuteri MM4-1A]
          Length = 403

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 121/247 (48%), Gaps = 36/247 (14%)

Query: 55  SSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAA 111
           ++I+ D +  Q+  +KQ  D+    AS+TK++T+ +I + +Q K+L  +TQ+ ++ + AA
Sbjct: 32  AAIMADASTGQII-YKQNVDKALPVASITKLLTILVIEDEIQQKQLSWDTQVKITPEIAA 90

Query: 112 TQNP---SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
             N    S + LK    ++    I A + +SA+  + A          +F + M  KAKK
Sbjct: 91  ISNDAAYSSIGLKSGQSYSVRTLINAALVKSADGATVALATATGDGTDEFNLKMMQKAKK 150

Query: 169 IGMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSI 214
           IGM  T   N+ GL + +                 +ARD AIL      ++P+  +  + 
Sbjct: 151 IGMTKTNIVNSVGLDNGDMKSFKLADLPNNAANTMSARDVAILSQYFVTHYPELLQITAQ 210

Query: 215 RKFRY---RNRIITNHNKLLNKM----------HNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           ++ ++   ++++ T  N  LNKM            IDG+KTG + ++G    ++ +Y+  
Sbjct: 211 KEVKFQIAKDQVKTEKN--LNKMLPGEQYAVKGVTIDGLKTGTSDSAGACFASTGKYQGH 268

Query: 262 PIVAVVM 268
            I+ V++
Sbjct: 269 RIITVIL 275


>gi|325661133|ref|ZP_08149760.1| hypothetical protein HMPREF0490_00493 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472640|gb|EGC75851.1| hypothetical protein HMPREF0490_00493 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 404

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 21/244 (8%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHL 100
           +S   E+      S++++D +  ++   K    + P AS TK+MT  +  E     + +L
Sbjct: 21  VSAKEEIEQLYAQSAVLMDADNGRVLFEKNGSEKKPMASTTKIMTCILALE-----EGNL 75

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
              + VS+ AA Q    L ++    F     + +L+  S ND + A  E I GS + FA 
Sbjct: 76  TDVVNVSENAARQPKVHLGMQMDEKFYLRDLLYSLMLESHNDSAVAIAEHIGGSVQAFAD 135

Query: 161 LMSNKAKKIGMQNTIYKNASGL---HDKNQ-ITTARDQA-ILGILLRKNFPQYYKYFSI- 214
            M+ KAK+IG ++T +   +GL    DK +  TTA D A I+   + K+ P+   + SI 
Sbjct: 136 KMNAKAKEIGCRDTYFITPNGLDASDDKGEHSTTAEDLARIMSYCILKS-PKKESFLSIT 194

Query: 215 RKFRY--------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           +K  Y        R+    NHN  L  M      KTG+T  +G+  V +L  +    V  
Sbjct: 195 QKGSYHFMDVDCHRSFSCQNHNAFLTMMDGALSGKTGFTGKAGYCYVGALESRGRTFVVA 254

Query: 267 VMGM 270
           ++G 
Sbjct: 255 LLGC 258


>gi|229007696|ref|ZP_04165288.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4]
 gi|228753564|gb|EEM03010.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4]
          Length = 426

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNP-SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   +  N  S +  ++   +T
Sbjct: 55  DELLAIASMSKLIVVYSVLEAIKEGKITWDTKVNISDYAYEISRNNEFSNVPFEKGRQYT 114

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
            ++   ++I  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 115 VKELYHSIIIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 174

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 175 KGKHPEGTDPNGENSLSARD---MGILSKTIITKYPEILEDTKQRFRN-FPDNHPKPI-R 229

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    S +  D  +++V++   +  ER  +
Sbjct: 230 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTISAKRGDLRLISVIIKTKSMDERFTE 289

Query: 280 ALELI 284
           + ELI
Sbjct: 290 SRELI 294


>gi|52140174|ref|YP_086656.1| D-alanyl-D-alanine carboxypeptidase (serine-type D-Ala-D-Ala
           carboxypeptidase) [Bacillus cereus E33L]
 gi|51973643|gb|AAU15193.1| D-alanyl-D-alanine carboxypeptidase (serine-type D-Ala-D-Ala
           carboxypeptidase) [Bacillus cereus E33L]
          Length = 418

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNAENSMSARD---MGILSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHN--------------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|210614210|ref|ZP_03290105.1| hypothetical protein CLONEX_02318 [Clostridium nexile DSM 1787]
 gi|210150787|gb|EEA81795.1| hypothetical protein CLONEX_02318 [Clostridium nexile DSM 1787]
          Length = 469

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 32/235 (13%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S IV+D++   +   K+ D+  YPAS+TK++T  +  E         N+Q+   +   TQ
Sbjct: 72  SGIVMDMDSGAILYAKKIDDQHYPASITKILTAVVALE---------NSQL-TDRVKFTQ 121

Query: 114 N--------PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           N         + + +K     + E  +  ++  SAN+VS A    ++G    F  +M+ K
Sbjct: 122 NCIDFLEYGDAHIGMKVGEEISMEDALYGMLLASANEVSYAIANSVNGGYDNFINMMNEK 181

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
             ++G  N+ + NA+GLH+    T+A D A++G    K + ++ K    R++      +T
Sbjct: 182 VAELGGTNSHFVNANGLHNDEHYTSAHDMALIGAAAFK-YEEFRKITGTRQYTIGPTALT 240

Query: 226 NHNKLLNKMHNI------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           + ++   + H +             G KTGYT  +   +VT     D  +VAV +
Sbjct: 241 SESRTFQQNHKMLFQGNRNYYEYCVGGKTGYTDQALTTLVTFATKDDKNLVAVTL 295


>gi|167640402|ref|ZP_02398666.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A0193]
 gi|177651865|ref|ZP_02934448.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A0174]
 gi|254735510|ref|ZP_05193217.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. Western North America USA6153]
 gi|167511622|gb|EDR87004.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A0193]
 gi|172082569|gb|EDT67633.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A0174]
          Length = 423

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNTDL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNAENSMSARD---MGILSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|229000174|ref|ZP_04159743.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
 gi|228759506|gb|EEM08483.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
          Length = 426

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNP-SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   +  N  S +  ++   +T
Sbjct: 55  DELLAIASMSKLIVVYSVLEAIKEGKITWDTKVNISDYAYEISRNNEFSNVPFEKGRQYT 114

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
            ++   ++I  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 115 VKELYHSIIIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 174

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 175 KGKHPEGTDPNGENSLSARD---MGILSKTIITKYPEILEDTKQRFRN-FPDNHPKPI-R 229

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    S +  D  +++V++   +  ER  +
Sbjct: 230 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTISAKRGDLRLISVIIKTKSMDERFTE 289

Query: 280 ALELI 284
           + ELI
Sbjct: 290 SRELI 294


>gi|271968855|ref|YP_003343051.1| D-alanyl-D-alanine carboxypeptidase-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270512030|gb|ACZ90308.1| D-alanyl-D-alanine carboxypeptidase-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 313

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 18/227 (7%)

Query: 70  KQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKT 124
           KQ   R P ASLTK+MT Y++      ++  LN  + V+    + AAT + +   L+   
Sbjct: 76  KQATRRMPVASLTKVMTAYVVL-----REAGLNDIVTVNAGDVRHAATNDATAAALRAGE 130

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
             T  + +   +  S  D + A        E +F   M+  A+ +G+  T Y N+ GL  
Sbjct: 131 RLTVRELLYGAMLPSGADATHALARVYGPGESRFVAKMNAAARSLGLTGTRYGNSDGLPK 190

Query: 185 KNQ-ITTARDQAILG-ILLR----KNFPQYYKYFSIRKFR-YRNRIITNHNKLLNKMHNI 237
            +   +TA+DQA L  ++LR    +      +Y  +RK + +R  + TN NKLL +    
Sbjct: 191 PSPGYSTAQDQARLADVVLRDPVLRTIASTRRYV-VRKSKVHRAHVWTNTNKLLGEAPGA 249

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            G+KTGYTR +G+ +  +       ++ V++G   +  R Q A  L+
Sbjct: 250 LGVKTGYTRAAGYCLSFAADRDGHRLIGVILGDTRADRRFQTAGRLL 296


>gi|169334052|ref|ZP_02861245.1| hypothetical protein ANASTE_00445 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258769|gb|EDS72735.1| hypothetical protein ANASTE_00445 [Anaerofustis stercorihominis DSM
           17244]
          Length = 505

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 130/297 (43%), Gaps = 59/297 (19%)

Query: 31  MGKILFLSIIMISMASELHAK-PKYSS-------IVIDVNKNQMTGFKQDEPRYPASLTK 82
           +   L + ++++++ S ++A  PK S        +  D  K+++     ++  YPAS TK
Sbjct: 11  LSSFLIVVVLLLNITSNIYAAAPKVSKDSSLGLYLYEDSTKSELYSHNGNKKMYPASTTK 70

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT  +  EY++     + T   +++  A  + + LY  E    + +  +  L+  S ND
Sbjct: 71  IMTAALTLEYIKDLNKKVTTGSELNRLPAGSSTASLYKNET--LSYKDLLYGLMLPSGND 128

Query: 143 VSTAF----GEFIS-----GSEKKFAIL---MSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +       G+ IS       +K +++    M+ KAK+IGM  T + N  G HDKN  +T
Sbjct: 129 AAIVLACNVGKVISKDKNISKDKAYSVFVKEMNKKAKEIGMTKTHFNNPHGFHDKNHYST 188

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII------TNHNKLLNKM--HN------ 236
             D A+L                   F Y NR++      T  NK  ++   HN      
Sbjct: 189 PHDMAVLAAY-------------ADDFSYYNRVVDSTYYETTTNKTTHRWSGHNALILRG 235

Query: 237 -------IDGIKTGYTRNSGFNIVTSLRYKDDPI--VAVVMGMPTSQERDQKALELI 284
                    G KTGYT  +G  +V S    D+ I   AVV+  PT+ ++   A +L+
Sbjct: 236 SKYFYKPAKGDKTGYTGEAGRCVVGSSE-NDEGIRYYAVVLHSPTTAQQFGLARDLL 291


>gi|225871199|ref|YP_002747146.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp. equi
           4047]
 gi|225700603|emb|CAW95132.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus equi
           subsp. equi 4047]
          Length = 412

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 106/223 (47%), Gaps = 25/223 (11%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGIL 133
           ASL+K++T Y++++ +Q+ KL  ++ + +S    K       S + L  + Y T ++ + 
Sbjct: 55  ASLSKVLTAYLVYKEVQAGKLKWDSSVTISNYPYKLTTNYTISNVPLDARKY-TVKELLK 113

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG------------ 181
           ALI  +AN  + A  E I G+E KF   M  + K  G+      NASG            
Sbjct: 114 ALIVTNANSPAIALAEKIGGTEAKFVDKMIAQLKDWGITGAKVVNASGLPNHILGEHIYP 173

Query: 182 ---LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN-- 236
              L D NQ + A D A++   L K FP+  K  S  +  + ++ I ++N +L  M N  
Sbjct: 174 GSSLDDDNQFSAA-DLALVTSHLLKEFPEVLKLSSQVQAEFNHQQIFSYNYMLKGMPNYR 232

Query: 237 --IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
             +DG+   Y+   G + + +    +  I+ VV+    +Q+ D
Sbjct: 233 DGVDGLFVSYSEKGGSSFLATSVENNMRIITVVLNADHAQDND 275


>gi|313616428|gb|EFR89354.1| serine-type D-Ala-D-Ala carboxypeptidase [Listeria innocua FSL
           S4-378]
          Length = 220

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 108/212 (50%), Gaps = 24/212 (11%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL---KEKTYFTTEQGILA 134
           ASLTK+MT +++ E + +KKL  + ++ + +     +PS + L    +K  ++      A
Sbjct: 5   ASLTKLMTAFLVLEAVDNKKLSWDEELDLIR---LDDPSAVSLYAITQKRTWSVRDLYSA 61

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGL--HDKNQITTA 191
           ++  SAND +   G  +   +  F   M+N+AKK+G+ + T + +ASGL    K  ++T 
Sbjct: 62  MLVMSANDAAETLGNRL--DDANFPQKMNNEAKKLGLSSKTKFVSASGLDVDGKMAVSTT 119

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH-------NKLLNKMHNIDGIKTGY 244
           +D  +L   L    P+  +  S      ++ IIT         N  +  +  +DG+KTG+
Sbjct: 120 KDLFLLSSKLISTHPEVLETTS------KSSIITEEGATLESTNDSIGSIQGLDGLKTGF 173

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           T  +G+  + + +     ++++V+   T+++R
Sbjct: 174 TDEAGYCFIGTAKRDGKRVISIVLDADTAKKR 205


>gi|297193840|ref|ZP_06911238.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|297151973|gb|EDY65162.2| D-alanyl-D-alanine carboxypeptidase [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 454

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 104/218 (47%), Gaps = 15/218 (6%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK----LYLKEKTYFTTEQGIL 133
           AS+ K MT Y+I          +  +I V K A  ++ +K      +KE   FT +Q + 
Sbjct: 129 ASVAKTMTAYVILRDHPITGKQVGPKITVDKKAEEESKAKSESTAPIKEGQQFTEKQMLQ 188

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  S N+ +     + +GSE+ F   M++ AK +GM N+ Y + SGL     ++T  D
Sbjct: 189 LLMIPSGNNAARLLARWDAGSEEAFVKKMNDAAKDLGMTNSTYTDPSGLK-ATTVSTPLD 247

Query: 194 QAILGILLRKN--FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           Q  LG  + +N  F +      I       +I  N+++ L  M  + GIKTG +  +G N
Sbjct: 248 QIKLGKAVMENDVFREIVNTTRIEIPGIDGKIRNNNDRAL-LMDGVGGIKTGSSTPAGGN 306

Query: 252 IVTSLRYKDDP----IVAVVMG---MPTSQERDQKALE 282
           ++ S     D     IV +VMG    P   ++ +KA++
Sbjct: 307 LLWSANAVVDGEVRRIVGIVMGAQDAPALWQKLEKAID 344


>gi|296278518|pdb|3MFD|A Chain A, The Structure Of The Beta-Lactamase Superfamily Domain Of
           D- Alanine Carboxypeptidase From Bacillus Subtilis
 gi|296278519|pdb|3MFD|B Chain B, The Structure Of The Beta-Lactamase Superfamily Domain Of
           D- Alanine Carboxypeptidase From Bacillus Subtilis
          Length = 334

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 106/236 (44%), Gaps = 13/236 (5%)

Query: 55  SSIVIDVNKNQMTGFKQDE--PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S+I+ID    ++  + +DE   R  AS+TK+ T  +  E  +      +  + VS  A  
Sbjct: 11  SAIIIDGASGRVL-YAKDEHQKRRIASITKIXTAVLAIESGKX-----DQTVTVSANAVR 64

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S +YL E      +  +  L  RS ND + A  E + GS   F    + KA+++G +
Sbjct: 65  TEGSAIYLTEGQKVKLKDLVYGLXLRSGNDAAVAIAEHVGGSLDGFVYXXNQKAEQLGXK 124

Query: 173 NTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFS--IRKFRYRNRIITNHNK 229
           NT ++N  GL D +N  +TA D AIL     K    Y K     I K      +  N NK
Sbjct: 125 NTRFQNPHGLDDHENHYSTAYDXAILTKYAXK-LKDYQKISGTKIYKAETXESVWKNKNK 183

Query: 230 LLNKMHNID-GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           LL  ++    G KTGYT+ +   +V++       ++AV +  P   +   K    +
Sbjct: 184 LLTXLYPYSTGGKTGYTKLAKRTLVSTASKDGIDLIAVTINDPNDWDDHXKXFNYV 239


>gi|291548476|emb|CBL21584.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. SR1/5]
          Length = 415

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 8/129 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTT 128
           D    PA   K+MT  +  E  Q     L+ Q+ +++T     T   + +  +    FT 
Sbjct: 75  DTTLSPAGAVKIMTCLLALENSQ-----LDDQVTMTETGVSGVTDGGAHISSQLGEVFTM 129

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           EQ + AL+  SAND++    E I GS   F   M+++AK++G  NT++ N +GL D NQ 
Sbjct: 130 EQCLYALMLASANDIALQVAEQIGGSVDAFVQKMNDRAKELGCTNTVFTNPTGLPDDNQH 189

Query: 189 TTARDQAIL 197
           TTA D A++
Sbjct: 190 TTAHDLALI 198


>gi|228920088|ref|ZP_04083437.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839544|gb|EEM84836.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 407

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 104/201 (51%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 52  FPASTTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 106

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ KAK++G +++ +   +GLHD N  TT  D
Sbjct: 107 ILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSHFVTPNGLHDPNHYTTPYD 166

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +      ++I G KTG+T N  
Sbjct: 167 MAMITKGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSNFFENPYSIGG-KTGFT-NEA 223

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I++VVM 
Sbjct: 224 RNTLVLLNEKDGNRIISVVMA 244


>gi|225867886|ref|YP_002743834.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701162|emb|CAW98055.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus equi
           subsp. zooepidemicus]
          Length = 412

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 108/223 (48%), Gaps = 25/223 (11%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGIL 133
           ASL+K++T Y++++ +Q+ KL  ++ + +S    +       S + L  + Y T ++ + 
Sbjct: 55  ASLSKVLTAYLVYKEVQAGKLKWDSSVTISNYPYELTTNYTISNVPLDARKY-TVKELLK 113

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG------------ 181
           ALI  +AN  + A  E I G+E KF   M  + K+ G+ +    NASG            
Sbjct: 114 ALIVTNANSPAIALAEKIGGTEAKFVDKMIAQLKEWGITDAKVVNASGLPNHILGEHIYP 173

Query: 182 ---LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN-- 236
              L D NQ + A D A++   L K FP+  K  S  +  + ++ I ++N +L  M N  
Sbjct: 174 GSSLDDDNQFSAA-DLALVTSHLLKEFPEVLKLSSQVQAEFNHQQIFSYNYMLKGMPNYR 232

Query: 237 --IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
             +DG+   Y+   G + + +    +  I+ VV+    +Q+ D
Sbjct: 233 DGVDGLFVSYSEKGGSSFLATSVENNMRIITVVLNADHAQDND 275


>gi|291536181|emb|CBL09293.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis M50/1]
 gi|291538955|emb|CBL12066.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis XB6B4]
          Length = 327

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 102/214 (47%), Gaps = 23/214 (10%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQ 130
           E  YPAS TK++T YI  +Y       L+  + +S+ AA Q  + S   L        + 
Sbjct: 98  ERLYPASTTKILTAYIALKYCTD----LSQTVTISENAANQASDSSVCGLHAGDVIRMDD 153

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  ++ RS ND + +  E ISGS ++FA LM+ +A  +G   + + N +GL D+N  T+
Sbjct: 154 LLYGMMLRSGNDAAISIAESISGSVEEFAALMNKEAAALGATQSHFVNPNGLPDENHYTS 213

Query: 191 ARDQAIL--GILLRKNFPQYYKYFS-----------IRKFRYR--NRIITNHNKLLNKMH 235
             D  ++    L  + F Q     S           I +  +   N+ ++ H K  +   
Sbjct: 214 VYDLYLIFRAALQNETFVQIISTTSYDVTYQAGDGTIEEHTWENTNQYLSGHAKSPDGFT 273

Query: 236 NIDGIKTGYTRNSGFNIVT-SLRYKDDPIVAVVM 268
            I G KTG T  +G+ +V  S+  +  PI+++V+
Sbjct: 274 VIGG-KTGTTGAAGYCLVLYSMNEQSQPIISIVL 306


>gi|254518751|ref|ZP_05130807.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp.
           7_2_43FAA]
 gi|226912500|gb|EEH97701.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp.
           7_2_43FAA]
          Length = 389

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 121/256 (47%), Gaps = 9/256 (3%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++I ID    Q+   ++     P AS TK++T  I   Y       L+  + +SK A++ 
Sbjct: 67  NAIAIDAESRQVLWNQKGYEIVPMASTTKILTSLIAINYGD-----LDRIVTISKNASSI 121

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S +  K     T  + +  L+ RS ND + A  E I GS + F+ +M++ A+ +G+ +
Sbjct: 122 RGSTVGYKAGEKITMRELLFGLMFRSGNDAAIAIAEDIGGSVENFSNIMNDFARSLGIID 181

Query: 174 TIYKNASGLHDKNQITTARDQAILGI--LLRKNFPQYYKYFSIRKFRYR-NRIITNHNKL 230
           + +++  GL      ++A D AIL    +    F +      I K +Y   R   N NK+
Sbjct: 182 SHFESPHGLDSAKHYSSAYDLAILTAKGMEYDVFREIVGEKVIYKDKYNFTRDYQNINKI 241

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L ++   +G+KTGYT  +G  +V+S+ +    I+ VV+         +K    + S    
Sbjct: 242 LYRIPGANGVKTGYTGGAGKCLVSSVNHNGRNIIIVVLNCVDRWNVTEKIFNYVISTNTF 301

Query: 291 KTLKHQQTHRKDNLSS 306
             + ++   +++NL+ 
Sbjct: 302 AEISNKDILQRENLAG 317


>gi|311893558|dbj|BAJ25966.1| putative peptidase S11 family protein [Kitasatospora setae KM-6054]
          Length = 316

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 21/225 (9%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIP---VSKTAATQ----NPSKLYLKEKTYFTTEQ 130
           AS+TK+MT Y+I   L+   L    Q P   V   AA +      S   L+E    T  Q
Sbjct: 65  ASVTKVMTAYVI---LRGHPLEDGGQGPRIGVDAAAARESFAPGESTAQLREGQDLTERQ 121

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  ++  S N+V+     + SGS++ F + M+  A ++GM  T Y  ASGL +  + +T
Sbjct: 122 LLELMLLPSGNNVARLLARWDSGSQEAFVVKMNRAALELGMTRTTYTGASGLEESTR-ST 180

Query: 191 ARDQAILGILLRK---NFPQYYKYFSIRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYT 245
           A DQ    I L +     P   +   +R+         + N N LL +   + G+KTG T
Sbjct: 181 AEDQ----IRLARAAMGLPVLREVVGMRETTVAGVPGTVVNTNTLLGR-DGVIGLKTGST 235

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
             +G N++ +   +    V +V+G+  +Q  +    + + + LE+
Sbjct: 236 TAAGGNLMWAAEVRAGGGVRLVLGVVLAQRANTTPQQGLAAALER 280


>gi|229177783|ref|ZP_04305157.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
 gi|229189457|ref|ZP_04316474.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
 gi|228594048|gb|EEK51850.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
 gi|228605747|gb|EEK63194.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
          Length = 405

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 104/201 (51%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 50  FPASTTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 104

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ KAK++G +++ +   +GLHD N  TT  D
Sbjct: 105 ILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSHFVTPNGLHDPNHYTTPYD 164

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +      ++I G KTG+T N  
Sbjct: 165 MAMITKGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSNFFENPYSIGG-KTGFT-NEA 221

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I++VVM 
Sbjct: 222 RNTLVLLNEKDGNRIISVVMA 242


>gi|253578829|ref|ZP_04856100.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849772|gb|EES77731.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 421

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 113/244 (46%), Gaps = 17/244 (6%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSK 96
           ++ M  +A E       S++++D    ++   K  E P   AS TK++T  +  E     
Sbjct: 44  TVDMTPVAEEPAELYALSAVLMDGESGRVLYEKDGERPLANASTTKVLTCIVALENSPG- 102

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
               +  + VS+ AA+Q   KL L++   +  E  + +L+ +S ND + A  E   GS +
Sbjct: 103 ----DDYVQVSQNAASQPEVKLGLQKGEQYYLEDLLYSLMLKSHNDTAVAIAEHCGGSVE 158

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGL--HDKN--QITTARDQAILGILLRKNFPQYYKYF 212
            FA +++ KAK+IG +NT +   +GL   D+N    TTA+D A++     KN   +    
Sbjct: 159 GFARMLNRKAKQIGCKNTYFITPNGLDAEDENGKHHTTAKDLALIMRYAIKN-ETFLHIA 217

Query: 213 SIRKFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
             R + +      R   + N N  L+    +   KTGYT  +G+  V +   +    +  
Sbjct: 218 QTRDYTFSEITGKRTFSVHNANAFLDMRDGVLAGKTGYTSQAGYCYVCAWEKEGKTFIVS 277

Query: 267 VMGM 270
           ++G 
Sbjct: 278 LLGC 281


>gi|311897918|dbj|BAJ30326.1| putative peptidase S11 family protein [Kitasatospora setae KM-6054]
          Length = 740

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 103/202 (50%), Gaps = 13/202 (6%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           AK + ++ V+ V    + G  +++P   AS+TK+M  Y+I +    KK      + V K 
Sbjct: 393 AKGQAAAEVVGVGP--LGGSGEEKPVPIASVTKVMNAYLILQAHPLKKGESGPTLTVDKQ 450

Query: 110 AATQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           AA +    + S + LKE    +  + +  L+  SAN+V+     + SGSE++F   M+  
Sbjct: 451 AAQESGNADESTVTLKEGQQLSEYEALEMLMLPSANNVARLLARWDSGSEEEFVKKMNAT 510

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILG--ILLRKNFPQYYKYFSIRKFRYRNRI 223
           A ++GM NT Y + +G +D N  +TA+DQ  L   ++  + F Q          ++  + 
Sbjct: 511 AAQLGMPNTTYADPAG-YDNNTKSTAKDQLKLAEKVMQLEIFKQIVAEPDT---KFNGQR 566

Query: 224 ITNHNKLLNKMHNIDGIKTGYT 245
           + N N LL K  NI G+KTG +
Sbjct: 567 VFNTNALLGKNGNI-GVKTGSS 587


>gi|325840226|ref|ZP_08166993.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sp. HGF1]
 gi|325490374|gb|EGC92699.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sp. HGF1]
          Length = 324

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 20/152 (13%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++I++D+  N++   +  D   YPASLTKMMT+ +  E            +P +      
Sbjct: 79  NAILVDLTANEIIYERNPDVITYPASLTKMMTVLVAIE-----------NMPNTPMVVDV 127

Query: 114 NPSKLYLKEKTYFTTEQG--------ILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           + +KLY +         G        +   +  S  D +     +++GSE+ F  LM+ K
Sbjct: 128 DFNKLYEEGAALAGFSNGQVVSGDDLLYGTMLPSGADAAQTLANYVAGSEEAFVELMNQK 187

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           A+++GM +T + N +GLHD N  +T RD A+L
Sbjct: 188 ARELGMTSTHFTNVTGLHDDNHYSTVRDMAVL 219


>gi|293375518|ref|ZP_06621795.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sanguinis
           PC909]
 gi|292645858|gb|EFF63891.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sanguinis
           PC909]
          Length = 324

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 20/152 (13%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++I++D+  N++   +  D   YPASLTKMMT+ +  E            +P +      
Sbjct: 79  NAILVDLTANEIIYERNPDVITYPASLTKMMTVLVAIE-----------NMPNTPMVVDV 127

Query: 114 NPSKLYLKEKTYFTTEQG--------ILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           + +KLY +         G        +   +  S  D +     +++GSE+ F  LM+ K
Sbjct: 128 DFNKLYEEGAALAGFSNGQVVSGDDLLYGTMLPSGADAAQTLANYVAGSEEAFVELMNQK 187

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           A+++GM +T + N +GLHD N  +T RD A+L
Sbjct: 188 ARELGMTSTHFTNVTGLHDDNHYSTVRDMAVL 219


>gi|206968269|ref|ZP_03229225.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH1134]
 gi|206737189|gb|EDZ54336.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH1134]
          Length = 428

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 104/201 (51%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 73  FPASTTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 127

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ KAK++G +++ +   +GLHD N  TT  D
Sbjct: 128 ILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSHFVTPNGLHDPNHYTTPYD 187

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +      ++I G KTG+T N  
Sbjct: 188 MAMITKGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSNFFENPYSIGG-KTGFT-NEA 244

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I++VVM 
Sbjct: 245 RNTLVLLNEKDGNRIISVVMA 265


>gi|331086847|ref|ZP_08335924.1| hypothetical protein HMPREF0987_02227 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410013|gb|EGG89448.1| hypothetical protein HMPREF0987_02227 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 557

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 36/235 (15%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ-SKKLHLNTQIPVSKTAAT 112
           + I++D+N   +   K  DE  +PAS+TK+MT  +  E  + + K+H   +   S     
Sbjct: 130 AGIIMDMNSGAILYAKNIDEKEFPASITKIMTALVALENSELTDKVHFTEE---SVAFLE 186

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              + + ++     T E  +  ++  SAN+VS A  + +      F  +M+ KA+++G  
Sbjct: 187 YGDASIGMQPGEEITMEDALYGMLLASANEVSYAIADTVGNGYDNFIRMMNEKAEELGCT 246

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR-----YRNRI---- 223
           NT + N  GLHD+    +ARD A++              F   +FR     Y +RI    
Sbjct: 247 NTHFTNPHGLHDEEHYVSARDMALIASAA----------FQHEEFRKITNTYEHRIPPTN 296

Query: 224 ITNHNKLLNKMHNI--DGI----------KTGYTRNSGFNIVTSLRYKDDPIVAV 266
           + N  ++  + H +  DG           KTGYT  +   +V+ L   +  +V+V
Sbjct: 297 LVNEERVFQQYHQMLYDGTDTFYEPCVGGKTGYTDQALSTLVSYLDNGELQLVSV 351


>gi|228903867|ref|ZP_04067982.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           4222]
 gi|228855776|gb|EEN00321.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           4222]
          Length = 423

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + N++GL++ + 
Sbjct: 113 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKVGLKKYKFVNSTGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPTGENSMSARD---MGILAKTIITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFSYDGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|227530036|ref|ZP_03960085.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus vaginalis
           ATCC 49540]
 gi|227350068|gb|EEJ40359.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus vaginalis
           ATCC 49540]
          Length = 411

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 128/275 (46%), Gaps = 41/275 (14%)

Query: 34  ILFLSIIMISMASELHAKPKYSS----------IVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I FLS +++ M   + A+P+ +S          I+ID +  Q+   +  E + P AS++K
Sbjct: 5   IAFLSTLLL-MICCVVARPQTASAAQMIDSRSAIMIDADTGQIIYQQNSEEKLPIASISK 63

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+ +I + +   +L  NT++ +SK  A      N S + L+    +T  +   A + +
Sbjct: 64  LLTVSVIEDEINHHQLSWNTKVKISKKIAEVSNDSNYSAIGLQAGQSYTVRELFNATLIK 123

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           SA+  + A       + K+F   M  KA++IG+ +    N  GL              ++
Sbjct: 124 SADGAALALATADGSTIKQFNEKMQKKARQIGITDATIVNPVGLKNGDLKGLKQAGISNN 183

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLLNKMH---- 235
                TARD A++   L K++P   K  S  K ++     + + + N NK+L+       
Sbjct: 184 AENSMTARDVALMSQYLVKHYPSVLKVTSQPKAQFTIAKGKTKEVENLNKMLSGGKYTVD 243

Query: 236 --NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              IDG+KTG +  +G    ++  Y+   ++ VV+
Sbjct: 244 GVQIDGLKTGTSEAAGACFASTGSYQGHRLITVVL 278


>gi|317126753|ref|YP_004093035.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           cellulosilyticus DSM 2522]
 gi|315471701|gb|ADU28304.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           cellulosilyticus DSM 2522]
          Length = 479

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 120/282 (42%), Gaps = 56/282 (19%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           + I++D +  ++  G   D+P  PAS+ KMM++Y+I E ++   +  +  + ++      
Sbjct: 38  TGILVDADTGKILYGRNIDQPLPPASMVKMMSIYLIHESIEKGDISWDDIVYINDYLVND 97

Query: 114 -----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                N S + L++   +T  +   ++   SAN    A  E I+GSE  F  +M+ K K+
Sbjct: 98  LSKQINLSNVPLRKDEDYTVRELYESIAIYSANASMMAVAEHIAGSEGSFVEMMNEKGKE 157

Query: 169 IGMQNTI------------------------YKNASGLH--------------DKNQITT 190
           +GM N +                        + N++GL               D +   +
Sbjct: 158 LGMGNLLREEGEKHGISNLNEIAEANLGDFQFVNSTGLPNSVLLENRPSGTEIDDDNFMS 217

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----IITNHNKLLNKMHNI----DGIK 241
           AR  A L   L  ++P+  +  SI +  ++       ++ N NK+L    +     DG+K
Sbjct: 218 ARATATLAYHLLNDYPEVLETASIPEMTFKEGTEDAIVMPNWNKMLEGRGHFYEYADGLK 277

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMP---TSQERDQKA 280
           TG T  +G     +       ++ VVMG+P   TS+  D  A
Sbjct: 278 TGTTTAAGACFTGTAVKNGRRLITVVMGLPRPLTSRPEDDLA 319


>gi|75758555|ref|ZP_00738675.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74493989|gb|EAO57085.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 434

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 64  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 123

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + N++GL++ + 
Sbjct: 124 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKVGLKKYKFVNSTGLNNADL 183

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 184 KGKHPEGTDPTGENSMSARD---MGILAKTIITKYPEMLEDTKQRFRN-FPDNHPKPI-R 238

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 239 MENWNWMLPGAAFSYDGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 298

Query: 280 ALELI 284
           + ELI
Sbjct: 299 SRELI 303


>gi|297200368|ref|ZP_06917765.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sviceus ATCC
           29083]
 gi|297147640|gb|EDY53521.2| D-alanyl-D-alanine carboxypeptidase [Streptomyces sviceus ATCC
           29083]
          Length = 813

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 101/213 (47%), Gaps = 19/213 (8%)

Query: 59  IDVNK-NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----- 112
           +DVN    M  F +  P    S+ K MT YI+ +    K      +I V   A       
Sbjct: 473 MDVNGIGTMGDFGKQTPVAIGSVAKAMTAYIVLKDHPLKSGEEGAKITVDALAEKEGGYN 532

Query: 113 -QNPSKL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            Q  S L  +K     T  Q I A++  SAN+++     + SGSE  F   M++ AK++G
Sbjct: 533 KQGESTLNTVKNGDVLTQRQAIAAIMIPSANNIARLLARWDSGSEAAFIKKMNDTAKELG 592

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+NT Y +ASGL  ++ ++TA DQ  LG  L K  P   +  S+ ++     I  +  K 
Sbjct: 593 MKNTTYTDASGLK-ESTVSTAEDQVKLGNELVK-IPALMEITSMGQW-----IDPSGQKW 645

Query: 231 LNKMHNID----GIKTGYTRNSGFNIVTSLRYK 259
            N  + +     GIKTG T  +G N++ + R K
Sbjct: 646 YNYNYLVPYTGIGIKTGTTSAAGGNLLFAARKK 678


>gi|251777766|ref|ZP_04820686.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243082081|gb|EES47971.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 438

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 106/214 (49%), Gaps = 21/214 (9%)

Query: 34  ILFLSIIMIS----MASELHAKPKYS---SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMT 85
           I FLSI ++S    MA+   A P+ +   S+++D +  ++   K  D+   PAS TK+MT
Sbjct: 9   IFFLSIFLVSSINVMAAS--APPEINAEGSVLMDASTGEILFSKNPDKVLEPASTTKVMT 66

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
             +  E        LN ++ V++     + + + L +    T +  +L L+  S ND + 
Sbjct: 67  AILTLE-----NCDLNEEVVVTEDFTKVDGTTIGLLKGDIVTVKDLLLGLLLESGNDAAN 121

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN- 204
           A    IS S  KFA+LM+ K  +IG  NT +KN SGL D   +TTA D A++     KN 
Sbjct: 122 ALACHISSSIDKFAVLMNKKTIEIGAVNTHFKNPSGLPDPEHLTTAHDLALIMNEAIKND 181

Query: 205 -FPQYYKYFS----IRKFRYRNRIITNHNKLLNK 233
            F +  K  +    I+    R   I N N ++NK
Sbjct: 182 KFLELSKVMTYEIPIKNDSSRTIWINNKNHMINK 215


>gi|229145091|ref|ZP_04273484.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BDRD-ST24]
 gi|228638412|gb|EEK94849.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BDRD-ST24]
          Length = 442

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 111/220 (50%), Gaps = 30/220 (13%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S    K 
Sbjct: 48  SAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKI 107

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ 
Sbjct: 108 SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEF 167

Query: 170 GMQNTIYKNASG---------------LHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           GM++  + N++G               L +KN++ +ARD AIL   L ++FP+      I
Sbjct: 168 GMKDYKFVNSTGLTNQDLKGYHPEGTTLDEKNKM-SARDCAILAQRLIQDFPKILNTAKI 226

Query: 215 RKFRYRNR-----IITNHNKLLNKM----HNIDGIKTGYT 245
            K  ++        + N N +L  +      +DG+KTG T
Sbjct: 227 PKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTT 266


>gi|228924135|ref|ZP_04087411.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835625|gb|EEM80990.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 423

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 120/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
            ++   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +G+L +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDLNAENSMSARD---MGMLSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|229176064|ref|ZP_04303558.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
 gi|228607408|gb|EEK64736.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
          Length = 423

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VRELYYSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +G+L +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNGENSMSARD---MGMLSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFSYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|331085110|ref|ZP_08334196.1| hypothetical protein HMPREF0987_00499 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407893|gb|EGG87383.1| hypothetical protein HMPREF0987_00499 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 402

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 21/244 (8%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHL 100
           +S   E+      S++++D +  ++   K    + P AS TK+MT  +  E     + +L
Sbjct: 19  VSAKEEIEQLYAQSAVLMDADNGRVLFEKNGSEKKPMASTTKIMTCILALE-----EGNL 73

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
              + VS+ AA Q    L ++    F     + +L+  S ND + A  E I GS + FA 
Sbjct: 74  TDVVNVSENAARQPKVHLGMQMDEKFYLRDLLYSLMLESHNDSAVAIAEHIGGSVQAFAD 133

Query: 161 LMSNKAKKIGMQNTIYKNASGLH--DKN--QITTARDQA-ILGILLRKNFPQYYKYFSI- 214
            M+ KAK+IG ++T +   +GL   D N    TTA D A I+   + K+ P+   + SI 
Sbjct: 134 KMNAKAKEIGCRDTYFITPNGLDASDDNGEHSTTAEDLARIMSYCILKS-PKKESFLSIT 192

Query: 215 RKFRY--------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           +K  Y        R+    NHN  L  M      KTG+T  +G+  V +L  +    V  
Sbjct: 193 QKGSYHFMDVDCHRSFSCQNHNAFLTMMDGALSGKTGFTGKAGYCYVGALESRGRTFVVA 252

Query: 267 VMGM 270
           ++G 
Sbjct: 253 LLGC 256


>gi|228961651|ref|ZP_04123259.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798001|gb|EEM45006.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 423

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 120/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
            ++   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +G+L +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNAENSMSARD---MGMLSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|30023419|ref|NP_835050.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
 gi|229130636|ref|ZP_04259592.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
 gi|229147928|ref|ZP_04276269.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
 gi|296505812|ref|YP_003667512.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
 gi|29898980|gb|AAP12251.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
 gi|228635578|gb|EEK92067.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
 gi|228652975|gb|EEL08857.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
 gi|296326864|gb|ADH09792.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
          Length = 423

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 120/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
            ++   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +G+L +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNAENSMSARD---MGMLSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|228911227|ref|ZP_04075032.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           200]
 gi|228848403|gb|EEM93252.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           200]
          Length = 423

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 120/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
            ++   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + N++GL++ + 
Sbjct: 113 VKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNSTGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPTGENSMSARD---MGILAKTIITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFSYDGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|195978796|ref|YP_002124040.1| D-alanyl-D-alanine carboxypeptidase precursor DacA.1 [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|195975501|gb|ACG63027.1| D-alanyl-D-alanine carboxypeptidase precursor DacA.1 [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
          Length = 428

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 132/282 (46%), Gaps = 31/282 (10%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYS-----SIVIDVNKNQMTGFKQ-DEPRYPA 78
           +R IQ+   ++ L+I+ IS  +       Y      +I ++++  ++   K  D+    A
Sbjct: 12  RRIIQMKKVLIALTILAISCLAYPAQADHYDISAKHAIAVELDSGKILYEKDADKTVSVA 71

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILA 134
           SL+K++T Y++++ +Q+ KL  ++ + +S    +       S + L  + Y T ++ + A
Sbjct: 72  SLSKVLTAYLVYKEVQAGKLKWDSSVTISNYPYELTTNYTISNVPLDARKY-TVKELLKA 130

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG------------- 181
           LI  +AN  + A  E I G+E KF   M  + K  G+      NASG             
Sbjct: 131 LIVTNANSPAIALAEKIGGTEAKFVDKMIAQLKDWGITGAKVVNASGLPNHILGEHIYPG 190

Query: 182 --LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN--- 236
             L D NQ + A D A++   L K FP+  K  S  +  + ++ I ++N +L  M N   
Sbjct: 191 SSLDDDNQFSAA-DLALVTSHLLKEFPEVLKLSSQVQAEFNHQQIFSYNYMLKGMPNYRD 249

Query: 237 -IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
            +DG+   Y+   G + + +    +  I+ VV+    +Q+ D
Sbjct: 250 GVDGLFVSYSEKGGSSFLATSVENNMRIITVVLNADHAQDND 291


>gi|299820880|ref|ZP_07052769.1| serine-type D-Ala-D-Ala carboxypeptidase [Listeria grayi DSM 20601]
 gi|299817901|gb|EFI85136.1| serine-type D-Ala-D-Ala carboxypeptidase [Listeria grayi DSM 20601]
          Length = 441

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 103/227 (45%), Gaps = 26/227 (11%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPS--KLYLKEKTYFTTEQGIL 133
           AS+TKM+  YI+ E +   KL    ++ +S  A   +Q+ S   + L+   ++T ++   
Sbjct: 67  ASMTKMLDEYILLEKIDQGKLKWTDKVKISGYAHEVSQDTSLSNVPLRNGEFYTVKELYQ 126

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-----KNQI 188
           A+   SAN  + A  E I+GSEK F  LM+ KA  + +    + N +GL++     K QI
Sbjct: 127 AMAIYSANGAAIALAEKIAGSEKAFVGLMNEKANSLKLGKHKFVNVTGLNNSDLKGKQQI 186

Query: 189 T--------TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM- 234
                    TAR  A L   L   +P   K  S  K  +R        ++N N LL  + 
Sbjct: 187 GGKNSENKMTARGMAKLAKSLIDTYPDVLKTASTTKLAFRKGTSDQINMSNWNWLLPGLI 246

Query: 235 ---HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                +DG+KTG T  +G  +  + +     ++ V++        DQ
Sbjct: 247 YGRKGVDGLKTGTTDYAGMCLTATAKQDGMRVITVILHANGGNSSDQ 293


>gi|229153550|ref|ZP_04281728.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
 gi|228630154|gb|EEK86805.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
          Length = 434

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 120/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 64  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 123

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
            ++   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 124 VKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 183

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +G+L +    +Y +     K R+RN    NH K + +
Sbjct: 184 KGKHPEGTDPNAENSMSARD---MGMLSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 238

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 239 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 298

Query: 280 ALELI 284
           + ELI
Sbjct: 299 SRELI 303


>gi|225027655|ref|ZP_03716847.1| hypothetical protein EUBHAL_01914 [Eubacterium hallii DSM 3353]
 gi|224954969|gb|EEG36178.1| hypothetical protein EUBHAL_01914 [Eubacterium hallii DSM 3353]
          Length = 321

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 78/142 (54%), Gaps = 6/142 (4%)

Query: 54  YSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQ-SKKLHLNTQIPVSKTAA 111
           Y+ ++I+ + N+ +  +   +  YPAS+TK+MT  +  E+     ++ L   I +++  A
Sbjct: 73  YADLLINDSTNEVLESYHCFDRLYPASITKVMTALLTLEHGNMDDEITLKHDINLTENGA 132

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             +     L +    T  Q    ++ +SAND +    E+++GSE KF  +M+ KAK++G 
Sbjct: 133 VIST----LTKGDTVTVGQVFHTMLIKSANDCAVILAEYVAGSESKFIDMMNAKAKELGA 188

Query: 172 QNTIYKNASGLHDKNQITTARD 193
            +T + N +GLHD N  TTA D
Sbjct: 189 THTHFVNPNGLHDNNHYTTAYD 210


>gi|218231994|ref|YP_002370166.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           B4264]
 gi|218159951|gb|ACK59943.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           B4264]
          Length = 423

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 120/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
            ++   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +G+L +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNAENSMSARD---MGMLSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|254827320|ref|ZP_05232007.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           N3-165]
 gi|254830810|ref|ZP_05235465.1| hypothetical protein Lmon1_05599 [Listeria monocytogenes 10403S]
 gi|254899789|ref|ZP_05259713.1| hypothetical protein LmonJ_08246 [Listeria monocytogenes J0161]
 gi|254913006|ref|ZP_05263018.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes J2818]
 gi|254937387|ref|ZP_05269084.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes F6900]
 gi|284800360|ref|YP_003412225.1| hypothetical protein LM5578_0105 [Listeria monocytogenes 08-5578]
 gi|284993545|ref|YP_003415313.1| hypothetical protein LM5923_0105 [Listeria monocytogenes 08-5923]
 gi|258599701|gb|EEW13026.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           N3-165]
 gi|258609993|gb|EEW22601.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes F6900]
 gi|284055922|gb|ADB66863.1| hypothetical protein LM5578_0105 [Listeria monocytogenes 08-5578]
 gi|284059012|gb|ADB69951.1| hypothetical protein LM5923_0105 [Listeria monocytogenes 08-5923]
 gi|293591008|gb|EFF99342.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes J2818]
          Length = 445

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 28/218 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPS--KLYLKEKTYFTTEQGIL 133
           AS+TKMM  Y++ E +   KL  + ++ +S+ A   +Q+ S   + L+    +T ++   
Sbjct: 65  ASMTKMMDEYLLLEAIDKGKLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYE 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           A+   SAN  + A  E I+GSEK+F   M+ KA ++ +    + NA+GL+          
Sbjct: 125 AMAIYSANGAAIAISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQV 184

Query: 184 ----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM 234
               D+N++ TAR  A L   L  ++P   K  S  K  +R        +TN N LL  +
Sbjct: 185 GGPKDENKM-TARGMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGL 243

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 +DG+KTG T  +G  +  +       ++ VV+
Sbjct: 244 IYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVL 281


>gi|229051059|ref|ZP_04194606.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
 gi|228722270|gb|EEL73668.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
          Length = 434

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 120/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 64  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 123

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
            ++   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 124 VKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 183

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +G+L +    +Y +     K R+RN    NH K + +
Sbjct: 184 KGKHPEGTDPNAENSMSARD---MGMLSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 238

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 239 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 298

Query: 280 ALELI 284
           + ELI
Sbjct: 299 SRELI 303


>gi|16804791|ref|NP_466276.1| hypothetical protein lmo2754 [Listeria monocytogenes EGD-e]
 gi|224502838|ref|ZP_03671145.1| hypothetical protein LmonFR_09994 [Listeria monocytogenes FSL
           R2-561]
 gi|16412254|emb|CAD00967.1| lmo2754 [Listeria monocytogenes EGD-e]
          Length = 445

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 28/218 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPS--KLYLKEKTYFTTEQGIL 133
           AS+TKMM  Y++ E +   KL  + ++ +S+ A   +Q+ S   + L+    +T ++   
Sbjct: 65  ASMTKMMDEYLLLEAIDKGKLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYE 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           A+   SAN  + A  E I+GSEK+F   M+ KA ++ +    + NA+GL+          
Sbjct: 125 AMAIYSANGAAIAISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQV 184

Query: 184 ----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM 234
               D+N++ TAR  A L   L  ++P   K  S  K  +R        +TN N LL  +
Sbjct: 185 GGPKDENKM-TARGMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGL 243

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 +DG+KTG T  +G  +  +       ++ VV+
Sbjct: 244 IYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVL 281


>gi|228955638|ref|ZP_04117636.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228804007|gb|EEM50628.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 423

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 120/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
            ++   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +G+L +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNAENSMSARD---MGMLSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGASFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|229181636|ref|ZP_04308961.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
 gi|228601832|gb|EEK59328.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
          Length = 423

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 120/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
            ++   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +G+L +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNAENSMSARD---MGMLSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|206970485|ref|ZP_03231438.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           AH1134]
 gi|229072856|ref|ZP_04206055.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
 gi|229082601|ref|ZP_04215064.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
 gi|206735062|gb|EDZ52231.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           AH1134]
 gi|228701033|gb|EEL53556.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
 gi|228710347|gb|EEL62322.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
          Length = 423

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 120/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
            ++   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +G+L +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNAENSMSARD---MGMLSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|47095562|ref|ZP_00233170.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str.
           1/2a F6854]
 gi|47015992|gb|EAL06917.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str.
           1/2a F6854]
          Length = 433

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 28/218 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPS--KLYLKEKTYFTTEQGIL 133
           AS+TKMM  Y++ E +   KL  + ++ +S+ A   +Q+ S   + L+    +T ++   
Sbjct: 53  ASMTKMMDEYLLLEAIDKGKLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYE 112

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           A+   SAN  + A  E I+GSEK+F   M+ KA ++ +    + NA+GL+          
Sbjct: 113 AMAIYSANGAAIAISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQV 172

Query: 184 ----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM 234
               D+N++ TAR  A L   L  ++P   K  S  K  +R        +TN N LL  +
Sbjct: 173 GGPKDENKM-TARGMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGL 231

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 +DG+KTG T  +G  +  +       ++ VV+
Sbjct: 232 IYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVL 269


>gi|325265499|ref|ZP_08132221.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
 gi|324029278|gb|EGB90571.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
          Length = 424

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 116/246 (47%), Gaps = 24/246 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D +  ++   K  +  +  AS TK+MT  +  EY +     L++++ VS  AA+Q
Sbjct: 55  SAVLMDADSGRILFSKNGQQEKAMASTTKIMTCILALEYGR-----LDSEMTVSSYAASQ 109

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
               L   +   F     + +L+  S ND +    E I  S + FA +M+ KAK++G  +
Sbjct: 110 PKVHLGAYKGETFYLRDLLYSLMLESHNDAAVIIAENIGNSVEGFADMMNAKAKELGCNH 169

Query: 174 TIYKNASGLH--DKN--QITTARDQAILGILLRKNFPQYYKYFSIRK---FRYRNR---- 222
           T +   +GL   D+N    TTA D A +      + PQ   +  I +   +++ +     
Sbjct: 170 TYFITPNGLDAADENGSHHTTAEDLARIMKYCIMDSPQKEMFLEITRTPSYQFTDCSGKS 229

Query: 223 --IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM--GMPTSQE--- 275
               TNHN  L  M      KTG+T ++G+  V SLR  D   +  ++  G P ++    
Sbjct: 230 TYSCTNHNAFLQMMDGALSGKTGFTGDAGYCYVGSLRRDDRTFIVALLACGWPNNKSYKW 289

Query: 276 RDQKAL 281
            D KAL
Sbjct: 290 ADTKAL 295


>gi|255029224|ref|ZP_05301175.1| hypothetical protein LmonL_09016 [Listeria monocytogenes LO28]
          Length = 432

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 28/218 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPS--KLYLKEKTYFTTEQGIL 133
           AS+TKMM  Y++ E +   KL  + ++ +S+ A   +Q+ S   + L+    +T ++   
Sbjct: 52  ASMTKMMDEYLLLEAIDKGKLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYE 111

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           A+   SAN  + A  E I+GSEK+F   M+ KA ++ +    + NA+GL+          
Sbjct: 112 AMAIYSANGAAIAISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQV 171

Query: 184 ----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM 234
               D+N++ TAR  A L   L  ++P   K  S  K  +R        +TN N LL  +
Sbjct: 172 GGPKDENKM-TARGMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGL 230

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 +DG+KTG T  +G  +  +       ++ VV+
Sbjct: 231 IYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVL 268


>gi|229087877|ref|ZP_04219989.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44]
 gi|228695432|gb|EEL48305.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44]
          Length = 426

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 120/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 55  DELLAIASMSKLIVVYSVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 114

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
            ++   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 115 VKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEYAKKLGLKKYKFVNATGLNNADL 174

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD  IL  ++   +P+     +  K R+RN    NH K + +
Sbjct: 175 KGKHPEGTDPNGENSLSARDMGILSKIIITKYPE---MLADTKQRFRN-FPDNHPKPI-R 229

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 230 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMDERFTE 289

Query: 280 ALELI 284
           + ELI
Sbjct: 290 SRELI 294


>gi|157736385|ref|YP_001489068.1| serine-type D-Ala-D-Ala carboxypeptidase [Arcobacter butzleri
           RM4018]
 gi|157698239|gb|ABV66399.1| serine-type D-Ala-D-Ala carboxypeptidase [Arcobacter butzleri
           RM4018]
          Length = 273

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 117/245 (47%), Gaps = 28/245 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR--YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S IV D+ K Q+  F +D  +   PASLTK+MT  +  E   S K+  ++ + ++     
Sbjct: 39  SIIVKDLTKKQLI-FSKDANQQVSPASLTKIMTAILAIE---SNKM--DSIVTITADMKK 92

Query: 113 QNPSKLYLK--EKTYFTTEQGILALITRSANDVSTAFGEFI-SGSEKKFAILMSNKAKKI 169
             P+ L  K  EK Y      + A + RSAND + +   ++ +G ++KF  +M+ KAKK+
Sbjct: 93  VEPTILGFKVGEKIYL--RDLVNAALIRSANDAANSIAIYLGNGDKQKFVNMMNAKAKKL 150

Query: 170 GMQNTIYKNASGLHDKNQITTARD----------QAILGILLRKNFPQYYKYFSIRKFRY 219
           GM  T ++N  G   KN  +TA D           +    ++RKN    Y + +I     
Sbjct: 151 GMTKTTFQNPCGFDAKNHKSTASDLLKLTEYAIKNSTFNAIVRKN---SYSFKAIN--TK 205

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           R   +   NKL  K   + G+KTGYT  +G  ++   +     I+ V++      E  + 
Sbjct: 206 RTYTVYTSNKLQPKEKYMIGVKTGYTNQAGPCLIARAKEGKKDILLVMLNSHNRWENTKL 265

Query: 280 ALELI 284
           AL+ I
Sbjct: 266 ALDTI 270


>gi|260907390|ref|ZP_05915712.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brevibacterium linens
           BL2]
          Length = 408

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 118/263 (44%), Gaps = 24/263 (9%)

Query: 51  KPKYSS-IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           KP  +S +V D++  ++   K  E R+ PAS  K++T   + +    KK  +  +    +
Sbjct: 67  KPTGTSWLVGDLDSGELHVAKNVEKRHAPASTIKLLTALALVDEFDDKKKKVTAEFEDME 126

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
              T    K+ L +   ++ +    A++  SAND + A G   +G + K   LM+ KA +
Sbjct: 127 VDGT----KVGLMQTNKYSIDLLFHAMLMSSANDAANALGR-AAGGQDKAVDLMNEKAAE 181

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN-------------FPQYYKYFSIR 215
           +GM NT  KN SGL  K Q TTA D   L   + ++             FP      +  
Sbjct: 182 LGMSNTQAKNTSGLDAKGQYTTAEDLMKLAWAVCEDDYLMKVIGTETYQFPGGTNPETKE 241

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           KF+     I NH K+  ++    G+K G+TR +  + V         +VA ++G+  +  
Sbjct: 242 KFKGYE--IQNHTKIAGQVDGGLGLKNGFTRAAKGSYVAVAERDGHRVVATMLGIDNNSR 299

Query: 276 RDQKALELITSFLEKKTLKHQQT 298
             Q A++L+     +   K  QT
Sbjct: 300 --QAAVDLLEWDFAQTDPKSLQT 320


>gi|326940194|gb|AEA16090.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 437

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 120/243 (49%), Gaps = 30/243 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S    K 
Sbjct: 43  SAILIEANSGKILYKKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKI 102

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A+   SAN  + A  E I+  E  F  +M++K+K+ 
Sbjct: 103 SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIASKEVNFVKMMNDKSKEF 162

Query: 170 GMQNTIYKNASG---------------LHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           GM++  + N++G               L +KN++ +ARD AIL   L ++FP+      I
Sbjct: 163 GMKDYKFVNSTGLTNNDLKGYHPEGTTLDEKNKM-SARDCAILAQRLIQDFPKILDTAKI 221

Query: 215 RKFRYRNR-----IITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            K  ++        + N N +L  +      +DG+KTG T  +G     ++      +++
Sbjct: 222 PKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLIS 281

Query: 266 VVM 268
           VV+
Sbjct: 282 VVI 284


>gi|283769437|ref|ZP_06342335.1| serine-type D-Ala-D-Ala carboxypeptidase [Bulleidia extructa W1219]
 gi|283103962|gb|EFC05347.1| serine-type D-Ala-D-Ala carboxypeptidase [Bulleidia extructa W1219]
          Length = 315

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 114/257 (44%), Gaps = 30/257 (11%)

Query: 57  IVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKK------LHLNTQIPVSKT 109
           +++D+ + ++   K + E  YPASLTKMM +Y+   +++ K+       +L  ++     
Sbjct: 34  LLLDLEQGEVLEEKGKSEKIYPASLTKMMVVYVALNHIEDKQKTAIISPNLLKELRQQGA 93

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A +  PS+      T  + E  +  +   S  D S    + +  +   F   M+ +AK++
Sbjct: 94  AISNYPSQ------TPISYEDLLYGIALPSGADCSITLAKALFPTTDAFVQAMNQEAKQL 147

Query: 170 GMQNTIYKNASGLHDKNQITTARDQA-ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           GM ++ + N +GLH  N  TT  D +  L + L+     +  YFS  K+  +  I  +H 
Sbjct: 148 GMLHSHFDNVTGLHSPNHYTTLEDLSRFLKVALKNQ--HFRNYFSAIKYTSKTGITLSHT 205

Query: 229 ------KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP-----TSQERD 277
                 K   K+    G KTGYT  +G  +      K  P + +  G P     +S   D
Sbjct: 206 LYRDIQKTGLKIPGYQGSKTGYTAQAGHCLALWFNQKGHPFLYLATGGPGDVYTSSHLSD 265

Query: 278 QKALELITSFLEKKTLK 294
                L+TS L K T K
Sbjct: 266 A---HLVTSRLAKATKK 279


>gi|229112801|ref|ZP_04242333.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
 gi|228670635|gb|EEL25947.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
          Length = 434

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 120/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 64  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 123

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
            ++   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 124 VKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 183

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +G+L +    +Y +     K R+RN    NH K + +
Sbjct: 184 KGKHPEGTDPNAENSMSARD---MGMLSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 238

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 239 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 298

Query: 280 ALELI 284
           + ELI
Sbjct: 299 SRELI 303


>gi|332524065|ref|ZP_08400317.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332315329|gb|EGJ28314.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 424

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 146/292 (50%), Gaps = 42/292 (14%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYS----------SIVIDVNKNQMTGFKQDEPRYP 77
           I +M K ++L +I I + S L + P ++          +I ++ +  ++   K  + + P
Sbjct: 18  IIIMKKPIYLILICIFILSPL-SHPVFADQALNLRAKEAIAVEYSTGKILYQKNSDRKVP 76

Query: 78  -ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK--TAATQNPS----KLYLKEKTYFTTEQ 130
            ASLTK+MT+Y+  + + S +L  N  + +SK  TA   NP      LY   K  ++ ++
Sbjct: 77  IASLTKIMTIYLTLKEINSGRLKWNDSVEMSKYATALANNPDISNPPLY---KNSYSVKE 133

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------ 184
            + + +  S+N  + A  E I+GSE KF   M N+ +  G+ +    NASGL++      
Sbjct: 134 LVDSSMVVSSNSSAIALAEKIAGSEAKFVDKMKNQLETWGITDYQLVNASGLNNSMLNGH 193

Query: 185 ---------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL--NK 233
                    +N++ +A+  AI+   L K++P+     S  +  + N I+TN N LL  N 
Sbjct: 194 IYPGSSKKSENKL-SAKSIAIVSRHLIKDYPEILTISSQNQLYWGNDILTNSNHLLPGNI 252

Query: 234 M--HNIDGIKTGYTRNSGFN-IVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           M    +DG+KTG T  +G   I T+++ K   IV ++     S++ + + +E
Sbjct: 253 MGRKGVDGLKTGTTTKAGQTYIGTAVQDKMRVIVVILNATDASKDSNARFVE 304


>gi|187932735|ref|YP_001884791.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum B str.
           Eklund 17B]
 gi|187720888|gb|ACD22109.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum B
           str. Eklund 17B]
          Length = 443

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 15/204 (7%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQS 95
           ++++ +S   E++A+    S+++D +  ++   K  D+   PAS TK+MT  +  E    
Sbjct: 24  INVMAVSSPPEINAE---GSVLMDASTGEILFSKNPDKVLEPASTTKVMTAILTLE---- 76

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
               LN ++ V++     + + + L +    T +  +L L+  S ND + A    +S S 
Sbjct: 77  -NCDLNEEVVVTEDFTKIDGTTIGLLKGDIVTVKDLLLGLLLESGNDAANALACHVSSSI 135

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFS 213
            KFA+LM+ KA +IG  NT +KN SGL D   +TTA D A++     KN  F +  K  +
Sbjct: 136 DKFAVLMNKKATEIGAVNTHFKNPSGLPDPEHLTTAHDLALIMNEAIKNDKFLELSKVMT 195

Query: 214 ----IRKFRYRNRIITNHNKLLNK 233
               I+    R   I N N ++NK
Sbjct: 196 YEIPIKNDSSRTIWINNKNHMINK 219


>gi|238923987|ref|YP_002937503.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium rectale ATCC
           33656]
 gi|238875662|gb|ACR75369.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium rectale ATCC
           33656]
          Length = 384

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 16/191 (8%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK++T  +  E     K  +N  + +S+ AA+Q   KL L     +  +  +  ++ 
Sbjct: 109 ASTTKLLTCIVALE-----KSDINDTVTISQNAASQPAVKLGLVAGNSYNMKDLLYGMML 163

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI----TTARD 193
            S ND + A  E + GS + FA LM+ KA +IG   T +   +GL  +N I    +TA D
Sbjct: 164 ESFNDCAYAIAEHVGGSTEGFAKLMNEKANEIGCLGTYFITPNGLDAENDISFHHSTAGD 223

Query: 194 QAILGILLRKNFPQYYKYFSIR---KFRYRNR----IITNHNKLLNKMHNIDGIKTGYTR 246
             ++        P+  ++  I    ++ +       +  NHN+LL +       KTG+T 
Sbjct: 224 LCVIMSYCAWKSPKSTQFLEITQTMQYTFETEEGKMVFNNHNRLLTETDYCISGKTGFTA 283

Query: 247 NSGFNIVTSLR 257
            +G+  V ++ 
Sbjct: 284 KAGYCYVAAVE 294


>gi|229074634|ref|ZP_04207657.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18]
 gi|228708516|gb|EEL60666.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18]
          Length = 407

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 105/201 (52%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ--GIL 133
           YPAS+TK++T  ++ E+ + +      Q   S+ A  Q  S   ++ +   T  +   ++
Sbjct: 52  YPASVTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETVNRNTALM 106

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ KAK++G  ++ +   +GLHD N  TT  D
Sbjct: 107 ILMVLSANDVSYAIAEHIGGSVENFANMMNEKAKQLGATDSHFVTPNGLHDPNHYTTPYD 166

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +      ++I G KTG+T N  
Sbjct: 167 IAMITRDVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSIYFENPYSIGG-KTGFT-NEA 223

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 224 RNTLVLLNEKDGNRIINVVMA 244


>gi|228943200|ref|ZP_04105668.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228975976|ref|ZP_04136496.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228979109|ref|ZP_04139457.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis Bt407]
 gi|228780635|gb|EEM28854.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis Bt407]
 gi|228783733|gb|EEM31792.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228816479|gb|EEM62636.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar berliner ATCC 10792]
          Length = 442

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 120/243 (49%), Gaps = 30/243 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S    K 
Sbjct: 48  SAILIEANSGKILYKKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKI 107

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  ++ S + L+    +T ++   A+   SAN  + A  E I+  E  F  +M++K+K+ 
Sbjct: 108 SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIASKEVNFVKMMNDKSKEF 167

Query: 170 GMQNTIYKNASG---------------LHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           GM++  + N++G               L +KN++ +ARD AIL   L ++FP+      I
Sbjct: 168 GMKDYKFVNSTGLTNNDLKGYHPEGTTLDEKNKM-SARDCAILAQRLIQDFPKILDTAKI 226

Query: 215 RKFRYRNR-----IITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            K  ++        + N N +L  +      +DG+KTG T  +G     ++      +++
Sbjct: 227 PKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLIS 286

Query: 266 VVM 268
           VV+
Sbjct: 287 VVI 289


>gi|56967192|pdb|1XP4|A Chain A, Crystal Structure Of A Peptidoglycan Synthesis Regulatory
           Factor (Pbp3) From Streptococcus Pneumoniae
 gi|56967193|pdb|1XP4|B Chain B, Crystal Structure Of A Peptidoglycan Synthesis Regulatory
           Factor (Pbp3) From Streptococcus Pneumoniae
 gi|56967194|pdb|1XP4|C Chain C, Crystal Structure Of A Peptidoglycan Synthesis Regulatory
           Factor (Pbp3) From Streptococcus Pneumoniae
 gi|56967195|pdb|1XP4|D Chain D, Crystal Structure Of A Peptidoglycan Synthesis Regulatory
           Factor (Pbp3) From Streptococcus Pneumoniae
          Length = 379

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 110/236 (46%), Gaps = 24/236 (10%)

Query: 56  SIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           +I ++ N  ++  +++D  +P   AS+TK++T+Y+++E L++  + L+T + +S      
Sbjct: 17  AIAVEANTGKIL-YEKDATQPVEIASITKLITVYLVYEALENGSITLSTPVDISDYPYQL 75

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            T + +     E   +T E+ + A +  SAN  + A  E I+GSEK F      K  + G
Sbjct: 76  TTNSEASNIPXEARNYTVEELLEATLVSSANSAAIALAEKIAGSEKDFVDXXRAKLLEWG 135

Query: 171 MQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
           +Q+    N +GL+              D+    +A D AI+   L K +PQ  +      
Sbjct: 136 IQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYDVAIVARNLIKKYPQVLEITKKPS 195

Query: 217 FRYRNRIITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +    IT+ N  L          DG+KTG T  +G + V +   K   ++ VV+
Sbjct: 196 STFAGXTITSTNYXLEGXPAYRGGFDGLKTGTTDKAGESFVGTTVEKGXRVITVVL 251


>gi|25010217|ref|NP_734612.1| hypothetical protein gbs0142 [Streptococcus agalactiae NEM316]
 gi|77414952|ref|ZP_00791047.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae 515]
 gi|23094569|emb|CAD45787.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77158996|gb|EAO70212.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae 515]
          Length = 395

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 118/258 (45%), Gaps = 34/258 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           KPK +SIVID   + +     D  R PAS++KM TLY++FE L   K  LNT   V+ T 
Sbjct: 45  KPK-ASIVIDNKGHILWEDNADLERDPASMSKMFTLYLLFEDLAKGKTSLNTT--VTATE 101

Query: 111 ATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMS 163
             Q  SK+Y      +     +   + I      S+N  +      +S  +   F   ++
Sbjct: 102 TDQAISKIYEISNNNIHAGVAYPIRELITMTAVPSSNVATIMIANHLSQNNPDAFIKRIN 161

Query: 164 NKAKKIGMQNTIYKNASGL-------------HDKN--QITTARDQAILGILLRKNFPQ- 207
             AKK+ M  T + N SG              +D N   +TTARD +IL     K +P  
Sbjct: 162 ETAKKLDMTKTHFYNPSGAVASAFNGLYSPKEYDNNATNVTTARDLSILTYHFLKKYPDI 221

Query: 208 --YYKYFSIRKF---RYRNRIIT-NHNKLLNK--MHNIDGIKTGYTRNSGFNIVTSLRYK 259
             Y KY  ++      Y     T N++    K  +  +DG+KTG + ++ FN + + + +
Sbjct: 222 LNYTKYPEVKAMVGTPYEETFTTYNYSTPGAKFGLEGVDGLKTGSSPSAAFNALVTAKRQ 281

Query: 260 DDPIVAVVMGMPTSQERD 277
           +  ++ V++G+    ++D
Sbjct: 282 NTRLITVILGVGDWSDQD 299


>gi|332639010|ref|ZP_08417873.1| D-alanyl-D-alanine carboxypeptidase [Weissella cibaria KACC 11862]
          Length = 421

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 141/296 (47%), Gaps = 36/296 (12%)

Query: 30  LMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMT 85
           L+  IL ++ I  S AS     PK    S++V DV   Q+   K    R P AS++K++T
Sbjct: 9   LLAGILLVTGIATS-ASAATVTPKVDAQSAVVADVQTGQVLADKNGNERMPIASISKLLT 67

Query: 86  LYIIFEYLQSKKLHLNTQI--PVSKTAATQNPSKLYLK---EKTYFTTEQGILALITRSA 140
           +Y++ + ++  +L + +QI  P S  A +  P+   +    E+ Y   E   +ALI +SA
Sbjct: 68  VYLVEQAIKEGRLSMQSQIKVPASIVAISNEPALANVPLSTERAYTIQELMEMALI-KSA 126

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--HDKNQIT--------- 189
           N  + A G  +SG++      + +     G+++T   + +GL   D   +T         
Sbjct: 127 NAAALALGYAVSGTDTGVNQQIQDLLTSWGIKDTTIVSGAGLTNGDMGALTNPKLGADVE 186

Query: 190 ---TARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RIITNHNKLL--NKMHNIDG 239
              +AR+ AI+G  L  ++P+  +  S++     +       I N +KLL   + +   G
Sbjct: 187 NELSARELAIVGRHLVTDYPEIQQITSMQTAEVPSGATGTETIENSDKLLADGQGYKFTG 246

Query: 240 IKTGY--TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
           +KTGY  + +S F  +T+L  +   +V VV+G   +  +    L  + S +  KTL
Sbjct: 247 LKTGYALSVHSTFIGLTTLEGRQ--VVTVVLGSDHTFSQTVAMLNAVKSAMTVKTL 300


>gi|217965981|ref|YP_002351659.1| beta-lactamase [Listeria monocytogenes HCC23]
 gi|217335251|gb|ACK41045.1| beta-lactamase [Listeria monocytogenes HCC23]
 gi|307572402|emb|CAR85581.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria
           monocytogenes L99]
          Length = 272

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 105/206 (50%), Gaps = 12/206 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL---KEKTYFTTEQGILA 134
           ASL+K+MT ++I E + + +L  +  + + +     +PS + L    +K  ++      A
Sbjct: 57  ASLSKLMTAFLILEAVDNNELSWDETLDLVR---LDDPSAVSLYAITQKRTWSVRDLYNA 113

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGL--HDKNQITTA 191
           ++T SAND +   G+ + G++  F   M+ +A K+GM + T + +ASGL    K  ++T 
Sbjct: 114 MLTMSANDAAETLGDRLDGAD--FPKEMNRQATKLGMSSRTNFVSASGLDVDGKTAVSTT 171

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-ITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           +D  +L   L    P+  +  S           + + N LL  +  +DG+KTG+T  +G+
Sbjct: 172 KDLFLLSSKLISTHPEVLETTSKPTVTTDEGAKLESTNDLLGSIQGLDGLKTGFTDEAGY 231

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQER 276
             + +       ++++V+   T+++R
Sbjct: 232 CFIGTAERGGKRVISIVLDAGTAEKR 257


>gi|229193641|ref|ZP_04320584.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
 gi|228589794|gb|EEK47670.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
          Length = 423

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 120/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
            ++   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +G+L +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNAENSMSARD---MGMLSKTMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|222095010|ref|YP_002529070.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1]
 gi|221239068|gb|ACM11778.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1]
          Length = 428

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 103/201 (51%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++ L+          ++
Sbjct: 73  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIELQPGETINRNTALM 127

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GLHD N  TT  D
Sbjct: 128 ILMVLSANDVSYAIAEHIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYD 187

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +       +I G KTG+T N  
Sbjct: 188 MAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPFSIGG-KTGFT-NEA 244

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 245 RNTLVLLNEKDGNRIINVVMA 265


>gi|222529246|ref|YP_002573128.1| serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456093|gb|ACM60355.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 451

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 116/248 (46%), Gaps = 29/248 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+++ +  Q+   K      +PAS TK++T  +   Y    + +LN    VS  A   
Sbjct: 45  SAILVEAHTGQILFEKNSNLTCFPASTTKVLTALVAISY----EHNLNKIFKVSSKATMI 100

Query: 114 NP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            P  S  YL      + +  + A++  SAND +    E ISG+   F   M+  AK IG 
Sbjct: 101 EPGSSSYYLNPGETISFQDLLYAMLLISANDAANVIAENISGNIPAFVEKMNQYAKSIGA 160

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ--YYKYFSIRKFRYRN-------- 221
           +N+ + N +GLH     TTA D   L ++ R+ +      K FS  ++R           
Sbjct: 161 ENSHFVNPNGLHSPQHYTTAYD---LSLIARQAYQNEILRKIFSTVEYRITTASMHKKPE 217

Query: 222 -RIITNHNKLLNKMHN-----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
            +II N NKLL K          GIKTGYT  +   ++ S +  +  ++AV++   +S++
Sbjct: 218 WQIIYNINKLLRKNSKYYYPYATGIKTGYTAQAKRCLIASAKKDNIELIAVIL---SSED 274

Query: 276 RDQKALEL 283
               A++L
Sbjct: 275 AFSDAIKL 282


>gi|291086840|ref|ZP_06344603.2| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
 gi|291077111|gb|EFE14475.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
          Length = 516

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 112/233 (48%), Gaps = 23/233 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D    ++   K  + + P AS TK+MT  +  E    + L     + VS  AA+ 
Sbjct: 156 SAVLMDAGTGRILYEKDGKTKRPMASTTKIMTCILALEEGSPEDL-----VTVSSYAASM 210

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
              +L ++E   +  +  + +L+  S ND + A  E I+GS ++FA+LM+ KA+ IG  +
Sbjct: 211 PDVQLNIREGEQYYLKDLLYSLMLESHNDTAVAVAEHIAGSVEEFAVLMNQKARDIGCTD 270

Query: 174 TIYKNASGLHDKN------QITTARDQA-ILGILL-----RKNFPQYYK----YFSIRKF 217
           T +   +GL   +        TTA D A I+   +     R+ F +  +     F+ R+ 
Sbjct: 271 TWFVTPNGLDGADGPQQTPHSTTAEDLARIMSYCITQSPKREEFIELTRTASHSFADREG 330

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           + R+    NHN  L  M      KTG+T  +G+  V +++ +    V  ++G 
Sbjct: 331 K-RSFYCANHNAFLTMMPEALTGKTGFTGAAGYCYVGAVQDEGRTFVVSLLGC 382


>gi|94990442|ref|YP_598542.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS10270]
 gi|94543950|gb|ABF33998.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS10270]
          Length = 451

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 124/252 (49%), Gaps = 33/252 (13%)

Query: 34  ILFLSIIMIS------MASELHAKPKYSSIVIDVNKNQMTGFKQDE--PRYPASLTKMMT 85
           ILF  ++  S      +A++  A  +++ IV++ +  ++  +++D   P   ASLTK++T
Sbjct: 47  ILFFMVLTCSGFGKTVLAADFQAGAEHA-IVVEADSGRVL-YEKDAKTPDAIASLTKLVT 104

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
            Y++ + ++S +L L+ Q+ +S  A      ++ S +   +KTY + +  + A +  S+N
Sbjct: 105 AYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDKKTY-SVQDLLTATLVASSN 163

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQ 187
             + A  E ++GSE  F   M  +    G+ +    NASGL               ++  
Sbjct: 164 SAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKDNRYPGSALEEEN 223

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTG 243
             +A+D A++ + L ++FP+  +     +  +    I + N+LL  M      +DG+KTG
Sbjct: 224 TLSAQDVAVVTMHLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMAKGRAGVDGLKTG 283

Query: 244 YTRNSGFNIVTS 255
            T  +G  +V +
Sbjct: 284 TTDLAGHCLVVT 295


>gi|255505331|ref|ZP_05345475.3| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
           DSM 14469]
 gi|255268368|gb|EET61573.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
           DSM 14469]
          Length = 326

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 7/123 (5%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP--SKLYLKEKTYFTTEQ 130
           E  YPASLTK+MT  +  +Y      +L+  I V + A   +P  S  YL+    +T  Q
Sbjct: 97  ERLYPASLTKIMTALVALKYG-----NLDDVITVDEVALDIDPESSVCYLELGDQYTLRQ 151

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            I  L+  S ND   A    + GS + F  +M+ +A  IG  NT + NA GL D+N  TT
Sbjct: 152 LIYGLLIASGNDAGNAIAYHVGGSIENFVAMMNQEAASIGATNTHFMNAHGLQDENHYTT 211

Query: 191 ARD 193
             D
Sbjct: 212 PYD 214


>gi|15675077|ref|NP_269251.1| putative D,D-carboxypeptidase, penicillin-binding protein
           [Streptococcus pyogenes M1 GAS]
 gi|13622233|gb|AAK33972.1| putative D,D-carboxypeptidase, penicillin-binding protein
           [Streptococcus pyogenes M1 GAS]
          Length = 411

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 124/252 (49%), Gaps = 33/252 (13%)

Query: 34  ILFLSIIMIS------MASELHAKPKYSSIVIDVNKNQMTGFKQDE--PRYPASLTKMMT 85
           ILF  ++  S      +A++     +++ IV++ +  ++  +++D   P   ASLTK++T
Sbjct: 7   ILFFMVLTCSGFGKTVLAADFQVGAEHA-IVVEADSGRVL-YEKDAKTPDAIASLTKLVT 64

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
            Y++ + ++S +L L+ Q+ +S  A      ++ S +   +KTY + +  + A +  S+N
Sbjct: 65  AYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDKKTY-SVQDLLTATLVASSN 123

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQ 187
             + A  E ++GSE  F   M  +    G+ +    NASGL               ++  
Sbjct: 124 SAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKDHRYPGSALEEEN 183

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTG 243
           + +A+D AI+ + L ++FP+  +     +  +    I + N+LL  M      +DG+KTG
Sbjct: 184 MLSAQDVAIVTMHLLEDFPEILEITKQTEVDFAGNSIKSFNQLLPGMAKGRAGVDGLKTG 243

Query: 244 YTRNSGFNIVTS 255
            T  +G  +V +
Sbjct: 244 TTDLAGHCLVVT 255


>gi|325108452|ref|YP_004269520.1| serine-type D-Ala-D-Ala carboxypeptidase [Planctomyces brasiliensis
           DSM 5305]
 gi|324968720|gb|ADY59498.1| Serine-type D-Ala-D-Ala carboxypeptidase [Planctomyces brasiliensis
           DSM 5305]
          Length = 302

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 103/232 (44%), Gaps = 26/232 (11%)

Query: 58  VIDVNKNQM-TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
            ID    +M    K  E   PAS TK+MT Y++F         +   +  S+ A     S
Sbjct: 41  AIDAETGEMIVSHKAGEVLRPASTTKIMTSYLVFNLAAESPEVMEELVTFSRRADKTGGS 100

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTA----FGEFIS----GSE-KKFAILMSNKAK 167
              ++E    +  + +  L+  S ND S A    FG+ +S    G+  ++F   M+ +A 
Sbjct: 101 SSTVREGEQVSVRELLYGLLLPSGNDASVALAEHFGDRLSPEGEGTAYERFVAAMNRQAA 160

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT-- 225
           ++GM +T Y+N  GL +   +TTA D A L     +  P + K   +R   YR  +    
Sbjct: 161 ELGMNDTHYENTHGLDNVKHVTTAADMARLAQAAMQ-IPDFRKV--VRTAEYRTAVTQED 217

Query: 226 ---------NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                    N NKLL   +   G+KTG+T  +G  +V+  +     ++ VV+
Sbjct: 218 GEQRVLEWRNTNKLLP--YGYLGVKTGWTTMAGACLVSCSQRDGRELILVVL 267


>gi|326792977|ref|YP_004310798.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
           DSM 5427]
 gi|326543741|gb|ADZ85600.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
           DSM 5427]
          Length = 432

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 115/250 (46%), Gaps = 20/250 (8%)

Query: 34  ILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYII 89
           + FL I+ IS      AKP      +I+I+   N +   K    + YPAS+TK++T  II
Sbjct: 8   LTFLFILCIS--PSFLAKPTVEARGAILIEAKTNTILYEKNAYSKFYPASITKLLTTLII 65

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            E L     H+ T+   S     ++ S++ LK    +    G+  L+  S N ++     
Sbjct: 66  EEQLSEN--HIITKSQNSVNTIPKDSSEIGLKIGDSYNKVNGLYGLLLGSDNFIAHDLAL 123

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
             SGS   FA LM+ +AK +G +NT + N  G HD N  TT  D A +      N P   
Sbjct: 124 AHSGSISNFAELMNTRAKALGAKNTHFTNPHGYHDPNHYTTPYDMAQIAKGAFDN-PTVQ 182

Query: 210 KYFSIRKFRY----RNRIIT--NHNKLL---NKMHN--IDGIKTGYTRNSGFNIVTSLRY 258
           K     +F +    +N+ I   N ++LL      +N  +   KTGY  ++G  +V    Y
Sbjct: 183 KIAGTAQFNFYVNNKNKYIPIKNTSRLLKSETPYYNPAVVACKTGYHSDAGQTLVAKAVY 242

Query: 259 KDDPIVAVVM 268
            D  ++A VM
Sbjct: 243 GDMELIAAVM 252


>gi|229095861|ref|ZP_04226840.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
 gi|229114814|ref|ZP_04244228.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
 gi|228668879|gb|EEL24307.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
 gi|228687694|gb|EEL41593.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
          Length = 407

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 105/201 (52%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ--GIL 133
           YPAS+TK++T  ++ E+ + +      Q   S+ A  Q  S   ++ +   T  +   ++
Sbjct: 52  YPASVTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETVNRNTALM 106

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ KAK++G  ++ +   +GLHD N  TT  D
Sbjct: 107 ILMVLSANDVSYAIAEHIGGSVENFANMMNEKAKQLGATDSHFVTPNGLHDPNHYTTPYD 166

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +      ++I G KTG+T N  
Sbjct: 167 IAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSIYFENPYSIGG-KTGFT-NEA 223

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 224 RNTLVLLNEKDGNRIINVVMA 244


>gi|291563060|emb|CBL41876.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
           SS3/4]
          Length = 461

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 113/239 (47%), Gaps = 29/239 (12%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           ++++++D +  ++   K ++   P AS TK+MT  +  E        L+T++ +S  AA+
Sbjct: 99  HAAVLLDGDTGRILYGKNEKKVLPMASTTKIMTCILALE-----NSGLDTEVEISDRAAS 153

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
               KL+  +   +  E  + +L+  S ND + A  E + GS + FA +M+ KA ++G  
Sbjct: 154 MPEVKLHAGKGEKYRLEDLLYSLMLESHNDTAVAIAEAVGGSVENFADMMNGKAAELGCD 213

Query: 173 NTIYKNASGLHDKNQ------ITTARDQAILGILLRKNF---PQYYKYFSIRKF------ 217
           +T +   +GL  +++       TTA D   L  +LR      P   ++ +I +       
Sbjct: 214 DTYFLTPNGLDAEDKESGKIHSTTAAD---LARILRYCISLSPAKEEFLAITRAPSHAFS 270

Query: 218 ---RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM--GMP 271
                R+    NHN LL  M      KTG+T  +G+  V +++  +   +A ++  G P
Sbjct: 271 DLSGTRSFSCVNHNALLTSMEGAVSGKTGFTGKAGYCYVGAVKKDEKLFIAALLDCGWP 329


>gi|332522713|ref|ZP_08398965.1| putative phage DNA packaging protein [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332313977|gb|EGJ26962.1| putative phage DNA packaging protein [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 396

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 135/292 (46%), Gaps = 43/292 (14%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS 107
           KPK SSIV+D +   +    QD     R PAS++K+ TLY++FE L   KL L+T+I  S
Sbjct: 45  KPK-SSIVVDASNGDI--LWQDNALTVRDPASMSKVFTLYLLFEDLAKGKLTLDTKITAS 101

Query: 108 KTAATQNPSKLY--LKEKTYFTTEQGILALITR----SANDVSTAFGEFISGSE-KKFAI 160
            T   Q  S++Y     K     E  I  LIT     S+N  +     ++S ++   +  
Sbjct: 102 DT--DQAISEIYEISNNKIVAGVEYPIRDLITMIAVPSSNAATVMVANYLSQNDASAYLD 159

Query: 161 LMSNKAKKIGMQNTIYKNASGL-------------HDKN--QITTARDQAILGILLRKNF 205
            +++ AK++GM +T + NA G              +DK+   +T+A D AIL     K +
Sbjct: 160 RINSTAKRLGMLDTHFSNAGGAVAEAFNGYYNPKNYDKSAPNLTSAHDLAILVYHFLKKY 219

Query: 206 PQYYKYFSIRKFR------YRNRIITNHNKLLNKMHNI---DGIKTGYTRNSGFNIVTSL 256
           P    Y +    +      Y     + +  L    + I   DG+KTG + ++ FN + + 
Sbjct: 220 PDILNYTNTSTVKTMIGTPYEETFHSYNYSLPGDKYGIKGVDGLKTGSSPSAAFNAMVTA 279

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALE--LITSFLEK--KTLKHQQTHRKDNL 304
           +     ++ +VMG+    ++D +        +  E   K LK+ +T + DNL
Sbjct: 280 KRGKARVITIVMGVGDWSDQDGEFYRHPFANALTEHGFKILKNGKTQKLDNL 331


>gi|227512066|ref|ZP_03942115.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus buchneri ATCC
           11577]
 gi|227084718|gb|EEI20030.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus buchneri ATCC
           11577]
          Length = 408

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 113/249 (45%), Gaps = 40/249 (16%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
            ++ +DVN N +   K  + PR  AS++K+MTLY++      +K+        SK   + 
Sbjct: 143 GAVALDVNTNGVVWSKNANTPRPIASVSKLMTLYLV-----QQKISNGGGTWTSKVNTSN 197

Query: 114 NPSKLYLKEKTY---------FTTEQGILALITRSANDVSTAFGEFISGSE-----KKFA 159
              K   K+ T+         +T     LA +  S+N+ + A G++++G       KKF 
Sbjct: 198 AGLKKLGKDSTFGGFKFTKNSYTVRDLYLAALIESSNNAAIALGQWVAGGSTPTYNKKFI 257

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKN-------------QITTARDQAILGILLRKNFP 206
            +M+ +AK   + NT + +ASG+   +              + +A D A +   L  ++ 
Sbjct: 258 SMMNAQAKSWNLSNTSFVSASGMEQNSLKPFGYSIGGANANMVSAADVAQIARHLITDYN 317

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLL------NKMHNIDGIKTGYTRNSGFNIV-TSLRYK 259
              K  SI       + + N+N LL       K  N+DG+KTGYT  +G+  V T  +  
Sbjct: 318 DVLKDASIGSMSLDGQKLYNYNNLLLGRKYYQKSLNVDGLKTGYTDPAGYCFVGTGRKSG 377

Query: 260 DDPIVAVVM 268
            D I+ VV+
Sbjct: 378 HDRIITVVL 386


>gi|50914161|ref|YP_060133.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS10394]
 gi|50903235|gb|AAT86950.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS10394]
          Length = 415

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 123/252 (48%), Gaps = 33/252 (13%)

Query: 34  ILFLSIIMIS------MASELHAKPKYSSIVIDVNKNQMTGFKQDE--PRYPASLTKMMT 85
           ILF  ++  S      +A++     +++ IV++ +  ++  +++D   P   ASLTK++T
Sbjct: 11  ILFFVVLTCSGLSKIVLAADFQVGAEHA-IVVEADSGRVL-YEKDAKTPDAIASLTKLVT 68

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
            Y++ + ++S +L L+ Q+ +S  A      ++ S +   +KTY + +  + A +  S+N
Sbjct: 69  AYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDKKTY-SVQDLLTATLVASSN 127

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQ 187
             + A  E ++GSE  F   M  +    G+ +    NASGL               ++  
Sbjct: 128 SAAIALAEKVAGSEPHFVNQMREQLSHWGITSGKILNASGLPNEVLKDHRYPGSALEEEN 187

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTG 243
             +A+D A++ + L ++FP+  +     +  +    I + N+LL  M      +DG+KTG
Sbjct: 188 TLSAQDVAVVTMRLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMAKGRAGVDGLKTG 247

Query: 244 YTRNSGFNIVTS 255
            T  +G  +V +
Sbjct: 248 TTDLAGHCLVVT 259


>gi|189501153|ref|YP_001960623.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium
           phaeobacteroides BS1]
 gi|189496594|gb|ACE05142.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium
           phaeobacteroides BS1]
          Length = 307

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 94/200 (47%), Gaps = 13/200 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK++T  +  E   S KL     IP  K A    P+K   +          + A +
Sbjct: 63  PASLTKILTSIMAIE---SGKLGDYVVIP--KEATVVEPTKAGFQAGERIRLVDLVKASM 117

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK---NQITTARD 193
            RS+ND + A   ++ GS + FA +M+ KA+KIGM+N+ + N +G          +TARD
Sbjct: 118 VRSSNDAAFAISIYLGGSVQGFARMMNRKARKIGMRNSNFTNPAGFDRDLYAGHYSTARD 177

Query: 194 QAILGILLRKN--FPQYYKYFSIRKFRYRNR---IITNHNKLLNKMHNIDGIKTGYTRNS 248
              L      N  F +     SI  F    R    + + NKLL K     GIKTGYT  +
Sbjct: 178 LLRLSEYAIGNEIFNRIAALDSISFFEQNTRKKYTLKSSNKLLGKYQYAVGIKTGYTMKA 237

Query: 249 GFNIVTSLRYKDDPIVAVVM 268
           G  ++   +  +  +V V++
Sbjct: 238 GRCLIARAKKGEKDMVLVML 257


>gi|300763430|ref|ZP_07073428.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           N1-017]
 gi|300515707|gb|EFK42756.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           N1-017]
          Length = 272

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 105/206 (50%), Gaps = 12/206 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL---KEKTYFTTEQGILA 134
           ASL+K+MT +++ E + + +L  +  + + +     +PS + L    +K  ++      A
Sbjct: 57  ASLSKLMTAFLVLEAVDNNELSWDETLDLVR---LDDPSAVSLYAITQKRTWSVRDLYSA 113

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGL--HDKNQITTA 191
           ++T SAND +   G+ + G++  F   M+ +A K+GM + T + +ASGL    K  ++T 
Sbjct: 114 MLTMSANDAAETLGDRLDGAD--FPKKMNRQATKLGMSSRTNFVSASGLDVDGKTAVSTT 171

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-ITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           +D  +L   L    P+  +  S           + + N LL  +  +DG+KTG+T  +G+
Sbjct: 172 KDLFLLSSKLISTHPEVLETTSKPTVTTDEGAKLESTNDLLGSIQGLDGLKTGFTDEAGY 231

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQER 276
             + +       ++++V+   T+++R
Sbjct: 232 CFIGTAERGGKRVISIVLDAGTAEKR 257


>gi|228968521|ref|ZP_04129509.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791227|gb|EEM38841.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 423

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + N++GL++ + 
Sbjct: 113 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNSTGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPTGENSMSARD---MGILAKTIITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHN--------------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFSYDGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|218900516|ref|YP_002448927.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           G9842]
 gi|218541526|gb|ACK93920.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           G9842]
          Length = 423

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + N++GL++ + 
Sbjct: 113 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNSTGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPTGENSMSARD---MGILAKTIITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHN--------------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFSYDGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|254851885|ref|ZP_05241233.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|258605180|gb|EEW17788.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
          Length = 272

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 105/206 (50%), Gaps = 12/206 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL---KEKTYFTTEQGILA 134
           ASL+K+MT +++ E + + +L  +  + + +     +PS + L    +K  ++      A
Sbjct: 57  ASLSKLMTAFLVLEAVDNNELSWDETLDLVR---LDDPSAVSLYAITQKRTWSVRDLYSA 113

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGL--HDKNQITTA 191
           ++T SAND +   G+ + G++  F   M+ +A K+GM + T + +ASGL    K  ++T 
Sbjct: 114 MLTMSANDAAETLGDRLDGAD--FPKKMNRQATKLGMSSRTNFVSASGLDVDGKTAVSTT 171

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-ITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           +D  +L   L    P+  +  S           + + N LL  +  +DG+KTG+T  +G+
Sbjct: 172 KDLFLLSSKLISTHPEVLETTSKPTVTTDEGAKLESTNDLLGSIQGLDGLKTGFTDEAGY 231

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQER 276
             + +       ++++V+   T+++R
Sbjct: 232 CFIGTAERGGKRVISIVLDAGTAEKR 257


>gi|169825187|ref|YP_001692798.1| D-alanyl-D-alanine carboxypeptidase [Finegoldia magna ATCC 29328]
 gi|167831992|dbj|BAG08908.1| D-alanyl-D-alanine carboxypeptidase [Finegoldia magna ATCC 29328]
          Length = 289

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 25/217 (11%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPS--KLYLKEKTY 125
           D+  YPASLTKMMT+Y     ++      + + P+ K +      QN S    Y  E T 
Sbjct: 57  DKKVYPASLTKMMTVYTALGKIED----FDKKAPIDKKSYQKLVKQNASMAGFYGNEPTT 112

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
           F  E  +   +  SA + + +    +SGS++KF  LM+  AK +G+ NT +KN+ G+ + 
Sbjct: 113 F--EDLLYGTMLASAGECADSLAINVSGSKEKFVDLMNENAKNMGLNNTNFKNSEGMDED 170

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RIITNHNKLLNKMHN---- 236
           +  ++A+D A L     KN  ++YK F+  K+         + I   + +L+++ +    
Sbjct: 171 DHYSSAKDMAFLLKNSLKN-QKFYKIFTTDKYTSTKTFDHPKGIEIESTVLSRLKDYEQD 229

Query: 237 ---IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
              I G K+G T  +G    T         + +VMG+
Sbjct: 230 GFKIIGGKSGTTEKAGLCWATLSEKNGKKYIIIVMGV 266


>gi|315635519|ref|ZP_07890785.1| serine-type D-Ala-D-Ala carboxypeptidase [Arcobacter butzleri JV22]
 gi|315480277|gb|EFU70944.1| serine-type D-Ala-D-Ala carboxypeptidase [Arcobacter butzleri JV22]
          Length = 273

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 117/245 (47%), Gaps = 28/245 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR--YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S IV D+ K Q+  F +D  +   PASLTK+MT  +  E   S K+  ++ + ++     
Sbjct: 39  SIIVKDLTKKQLI-FSKDANQQVSPASLTKIMTAILAIE---SNKM--DSVVTITADMKK 92

Query: 113 QNPSKLYLK--EKTYFTTEQGILALITRSANDVSTAFGEFI-SGSEKKFAILMSNKAKKI 169
             P+ L  K  EK Y      + A + RSAND + +   ++ +G ++KF  +M+ KAKK+
Sbjct: 93  VEPTILGFKVGEKIYL--RDLVNAALIRSANDAANSIAIYLGNGDKQKFVNMMNAKAKKL 150

Query: 170 GMQNTIYKNASGLHDKNQITTARD----------QAILGILLRKNFPQYYKYFSIRKFRY 219
           GM  T ++N  G   KN  +TA D           +    ++RKN    Y + +I     
Sbjct: 151 GMTKTTFQNPCGFDAKNHKSTASDLLKLTEYAIKNSTFNEIVRKN---SYSFKAIN--TK 205

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           R   +   NKL  K   + G+KTGYT  +G  ++   +     I+ V++      E  + 
Sbjct: 206 RTYTVYTSNKLQPKEKYMIGVKTGYTNQAGPCLIARAKEGKKDILLVMLNSHNRWENTKL 265

Query: 280 ALELI 284
           AL+ I
Sbjct: 266 ALDTI 270


>gi|222150410|ref|YP_002559563.1| penicillin-binding protein 4 [Macrococcus caseolyticus JCSC5402]
 gi|222119532|dbj|BAH16867.1| penicillin-binding protein 4 [Macrococcus caseolyticus JCSC5402]
          Length = 429

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 119/252 (47%), Gaps = 35/252 (13%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPV---- 106
           PK  +IVI     Q+      + ++P AS++K+MTLY++ + +   ++  NT++ V    
Sbjct: 44  PK-GTIVIAQKNGQVLYSDDADTKWPLASMSKLMTLYLLLQEMDKGEITFNTKVKVTDKF 102

Query: 107 ---SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
              SK  A  N +   L+    +T ++ +  ++T S+N  +      ++ ++ +F   M+
Sbjct: 103 YNISKLPALSNNN---LRLNAVYTVDELMPIMLTNSSNAATYMLSSLVTKNDSEFIDKMN 159

Query: 164 NKAKKIGMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYY 209
            +AK++GM +T + N  G                +++ I++A+D AIL   L   +P   
Sbjct: 160 QEAKRLGMNSTKFYNPVGAPNNLLNEYKAKKYPQNEDNISSAKDYAILCQHLVSEYPGIL 219

Query: 210 KY-----FSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKD 260
           KY      +++K          +N  L         +DG+KTG +  +GFN   + +  D
Sbjct: 220 KYTKRVDVTVKKGTIDEETFHTYNHSLEGAKLGYKGVDGLKTGSSDTAGFNTAITGKKND 279

Query: 261 DPIVAVVMGMPT 272
             I+ V+MG+ +
Sbjct: 280 MRIIQVMMGVES 291


>gi|300854622|ref|YP_003779606.1| D-alanyl-D-alanine carboxypeptidase [Clostridium ljungdahlii DSM
           13528]
 gi|300434737|gb|ADK14504.1| D-alanyl-D-alanine carboxypeptidase precursor [Clostridium
           ljungdahlii DSM 13528]
          Length = 325

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 70/130 (53%), Gaps = 8/130 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           +E  YPASLTKMMT  +  E L +    LN ++ ++ +A      ++ S    +     T
Sbjct: 93  EEKIYPASLTKMMTAIVAIENLPN----LNEEVKLTNSAFHELHGEDASMAGFQPNEQVT 148

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
               +  ++  S  +      E I+GSE+ F  +M+ KA ++GM+NT ++N +GL ++N 
Sbjct: 149 ALDLLYGILLPSGAECCIGLAEQIAGSEQNFVKMMNQKAAELGMRNTHFENTTGLQNENH 208

Query: 188 ITTARDQAIL 197
            TT +D AIL
Sbjct: 209 YTTVKDLAIL 218


>gi|329666891|gb|AEB92839.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus johnsonii DPC
           6026]
          Length = 308

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 105/220 (47%), Gaps = 21/220 (9%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT--QNP--SKLYLKEKTYFTTEQGIL 133
           AS+TK++T+Y+  + ++ KK+  +T +  ++       NP  + + L+    +T  +   
Sbjct: 76  ASMTKLLTVYLTLQAIKEKKISWDTTVTPTQEIVDLGSNPDYASVPLRLGQKYTVRELYD 135

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ----IT 189
           A + +SAN+ +      +SGSE  F   M  +A+K  + N  +    GL +K +    +T
Sbjct: 136 AALIKSANNAARLLAIAVSGSETNFLNQMRQQARKWKLNNAKFVTVDGLPEKKKNFLGMT 195

Query: 190 T-------ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH------N 236
           T       A D AI+   L  ++P+        +  ++N ++TN NK+L+ +        
Sbjct: 196 TTVENKMSANDMAIVARKLTTDYPEILNTTKQARAYFQNTLMTNSNKMLSGLSYYDSTFP 255

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           +DG+KTG T  +G     ++      ++ V++G     ER
Sbjct: 256 VDGLKTGTTDGAGSCFTCTVNKNGKRVITVILGAENDNER 295


>gi|71910630|ref|YP_282180.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS5005]
 gi|71853412|gb|AAZ51435.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS5005]
          Length = 442

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 124/252 (49%), Gaps = 33/252 (13%)

Query: 34  ILFLSIIMIS------MASELHAKPKYSSIVIDVNKNQMTGFKQDE--PRYPASLTKMMT 85
           ILF  ++  S      +A++     +++ IV++ +  ++  +++D   P   ASLTK++T
Sbjct: 38  ILFFMVLTCSGFGKTVLAADFQVGAEHA-IVVEADSGRVL-YEKDAKTPDAIASLTKLVT 95

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
            Y++ + ++S +L L+ Q+ +S  A      ++ S +   +KTY + +  + A +  S+N
Sbjct: 96  AYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDKKTY-SVQDLLTATLVASSN 154

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQ 187
             + A  E ++GSE  F   M  +    G+ +    NASGL               ++  
Sbjct: 155 SAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKDHRYPGSALEEEN 214

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTG 243
           + +A+D AI+ + L ++FP+  +     +  +    I + N+LL  M      +DG+KTG
Sbjct: 215 MLSAQDVAIVTMHLLEDFPEILEITKQTEVDFAGNSIKSFNQLLPGMAKGRAGVDGLKTG 274

Query: 244 YTRNSGFNIVTS 255
            T  +G  +V +
Sbjct: 275 TTDLAGHCLVVT 286


>gi|218902481|ref|YP_002450315.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH820]
 gi|218536407|gb|ACK88805.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH820]
          Length = 428

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 103/201 (51%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 73  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 127

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GLHD N  TT  D
Sbjct: 128 ILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYD 187

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +      ++I G KTG+T N  
Sbjct: 188 MAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPYSIGG-KTGFT-NEA 244

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + IV VVM 
Sbjct: 245 RNTLVLLNEKDGNRIVNVVMA 265


>gi|228913946|ref|ZP_04077571.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228944975|ref|ZP_04107336.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228814644|gb|EEM60904.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228845885|gb|EEM90911.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 407

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 103/201 (51%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 52  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 106

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GLHD N  TT  D
Sbjct: 107 ILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYD 166

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +      ++I G KTG+T N  
Sbjct: 167 MAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPYSIGG-KTGFT-NEA 223

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + IV VVM 
Sbjct: 224 RNTLVLLNEKDGNRIVNVVMA 244


>gi|209559380|ref|YP_002285852.1| Penicillin-binding protein 7 precursor (PBP-7) (D-alanyl-D-alanine-
           endopeptidase) [Streptococcus pyogenes NZ131]
 gi|209540581|gb|ACI61157.1| Penicillin-binding protein 7 precursor (PBP-7) (D-alanyl-D-alanine-
           endopeptidase) [Streptococcus pyogenes NZ131]
          Length = 437

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 124/252 (49%), Gaps = 33/252 (13%)

Query: 34  ILFLSIIMIS------MASELHAKPKYSSIVIDVNKNQMTGFKQDE--PRYPASLTKMMT 85
           ILF  ++  S      +A++     +++ IV++ +  ++  +++D   P   ASLTK++T
Sbjct: 11  ILFFVVLTCSGLSKIVLAADFQVGAEHA-IVVEADSGRVL-YEKDAKTPDAIASLTKLVT 68

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
            Y++ + ++S +L L+ Q+ +S  A      ++ S +   +KTY + +  + A +  S+N
Sbjct: 69  AYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDKKTY-SVQDLLTATLVASSN 127

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQ 187
             + A  E ++GSE  F   M  +    G+ +    NASGL               ++  
Sbjct: 128 SAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKDHRYPGSALEEEN 187

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTG 243
           + +A+D AI+ + L ++FP+  +     +  +    I + N+LL  M      +DG+KTG
Sbjct: 188 MLSAQDVAIVTMHLLEDFPEILEITKQTEVDFAGNSIKSFNQLLPGMAKGRAGVDGLKTG 247

Query: 244 YTRNSGFNIVTS 255
            T  +G  +V +
Sbjct: 248 TTDLAGHCLVVT 259


>gi|262280670|ref|ZP_06058453.1| D-alanyl-D-alanine endopeptidase [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257570|gb|EEY76305.1| D-alanyl-D-alanine endopeptidase [Acinetobacter calcoaceticus
           RUH2202]
          Length = 348

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 117/257 (45%), Gaps = 28/257 (10%)

Query: 46  SELHAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYL--QSKKLH 99
           S  +A+P  S+   +V+D    ++   K      P AS+TK+MT  +  +     S+++ 
Sbjct: 94  SGYNAQPSVSARAALVMDAQTGEVLFSKNTNASVPIASITKLMTAVVTADARLNMSEEIM 153

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           L  QI  +      + S L + +K      + +L  + +S N  + A      G    F 
Sbjct: 154 LE-QIDFAGANGKNSSSTLRVGDK--MNRAEVLLFALMKSENPAAAALARTYPGGRPAFV 210

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR- 218
             M++KA+ +GM  T Y  ++GL  +N +++ARD   LGIL         +Y  IR+F  
Sbjct: 211 AAMNSKARALGMNATHYYESTGLDPRN-VSSARD---LGILAST----ASQYGLIRQFST 262

Query: 219 ---------YRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                    YR     N N L+ N   NI+  KTGY   +G  +V        P V V++
Sbjct: 263 TPTYDFNLGYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLL 322

Query: 269 GMPTSQERDQKALELIT 285
           G P+SQ R+  A  L++
Sbjct: 323 GEPSSQARNNDATNLLS 339


>gi|229164337|ref|ZP_04292267.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
 gi|228619080|gb|EEK75976.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
          Length = 424

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 120/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
            ++   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + N++GL++ + 
Sbjct: 113 VKELYHSIVIFSANGSSIALAELLAGSEKNFLSLANEHAKKLGLKKYKFVNSTGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNGENSMSARD---MGILSKTIITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|227509182|ref|ZP_03939231.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227525051|ref|ZP_03955100.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus hilgardii ATCC
           8290]
 gi|227087763|gb|EEI23075.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus hilgardii ATCC
           8290]
 gi|227191328|gb|EEI71395.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 408

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 113/249 (45%), Gaps = 40/249 (16%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
            ++ +DVN N +   K  + PR  AS++K+MTLY++      +K+        SK   + 
Sbjct: 143 GAVALDVNTNGVVWSKNANTPRPIASVSKLMTLYLV-----QQKISNGGGTWTSKVNTSN 197

Query: 114 NPSKLYLKEKTY---------FTTEQGILALITRSANDVSTAFGEFISGSE-----KKFA 159
              K   K+ T+         +T     LA +  S+N+ + A G++++G       KKF 
Sbjct: 198 AGLKKLGKDSTFGGFKFTKNSYTVRDLYLAALIESSNNAAIALGQWVAGGSTPTYNKKFI 257

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKN-------------QITTARDQAILGILLRKNFP 206
            +M+ +AK   + NT + +ASG+   +              + +A D A +   L  ++ 
Sbjct: 258 SMMNAQAKSWNLSNTSFVSASGMEQNSLKPFGYSIGGANANMVSAADVAQIARHLITDYN 317

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLL------NKMHNIDGIKTGYTRNSGFNIV-TSLRYK 259
              K  SI       + + N+N LL       K  N+DG+KTGYT  +G+  V T  +  
Sbjct: 318 DVLKDASIGSMSLDGQKLYNYNNLLPGRKYYQKSLNVDGLKTGYTDPAGYCFVGTGRKSG 377

Query: 260 DDPIVAVVM 268
            D I+ VV+
Sbjct: 378 HDRIITVVL 386


>gi|229916043|ref|YP_002884689.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Exiguobacterium sp. AT1b]
 gi|229467472|gb|ACQ69244.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Exiguobacterium sp. AT1b]
          Length = 337

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 99/229 (43%), Gaps = 27/229 (11%)

Query: 57  IVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           I+ID N N           +PAS TK+MT  + +E   +    L+  I   + +    P 
Sbjct: 99  ILIDKNANDRV--------FPASTTKLMTALLAYEKASAAN-ELDQPIITIQQSTLDIPW 149

Query: 117 K---LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
                +L      T  Q + A +  S ND + +  E+ SGS   F  LM+++AK +G+  
Sbjct: 150 DSHIAHLAIGDTLTVRQALYATLLESGNDAANSLAEYTSGSTNAFVQLMNDRAKVLGLTG 209

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-------------RYR 220
           T + NA G  D N  TTA D A +       +P+  +     +F             R+ 
Sbjct: 210 TNFVNAHGYSDPNHYTTANDMAKIAFAF-STYPELIEIAGTYEFKAEFKDKDGNGKRRWW 268

Query: 221 NRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             + ++ N + +N    +   KTGYT  SG+ +V  +++  +  + V M
Sbjct: 269 YHLGSSVNERSVNYSKFVTATKTGYTDESGYTMVFIMKHNSETYILVTM 317


>gi|169351202|ref|ZP_02868140.1| hypothetical protein CLOSPI_01981 [Clostridium spiroforme DSM 1552]
 gi|169292264|gb|EDS74397.1| hypothetical protein CLOSPI_01981 [Clostridium spiroforme DSM 1552]
          Length = 415

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 111/234 (47%), Gaps = 12/234 (5%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQS-KKLHLNTQIPVSKTAATQ 113
           ++ ID N   +   K  DE  YPAS+TK+MT  +  + +++  K  + TQ  +     T 
Sbjct: 38  AVAIDANSGLILYNKNMDERMYPASMTKVMTAIVALDMIENLDKTTVITQNDIDTVWETG 97

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S  +   +T  T    +L  I  S  D + A    + GS++ F   M+  AKK+ +++
Sbjct: 98  ASSANFEVGET-VTYRDLLLGAILPSGADATRALANNLCGSQEAFVEKMNECAKKLKLKD 156

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-------FRYRNRIITN 226
           T + N +G+HD N  TT  D A++      N P + + +S R         ++ N+ + N
Sbjct: 157 THFVNTTGIHDDNHYTTVHDMALIVQYAVAN-PTFKEIYSKRYATSSNGLHQWVNKSVYN 215

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
             +      +I G K+GYT ++  N ++SL    D  + VV+G   + +   KA
Sbjct: 216 AKRSNINTDSIIGCKSGYT-DAAKNCLSSLDKVGDNEIIVVVGKAVNNDVKPKA 268


>gi|229034027|ref|ZP_04188975.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
 gi|228728290|gb|EEL79318.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
          Length = 423

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +G+L +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNGENSMSARD---MGMLSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFSYEGADGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|288921678|ref|ZP_06415947.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Frankia sp.
           EUN1f]
 gi|288346947|gb|EFC81255.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Frankia sp.
           EUN1f]
          Length = 572

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 82/187 (43%), Gaps = 16/187 (8%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           P  PAS  KM+T   +   L   ++     + +S  AA  + +++ L     +T      
Sbjct: 118 PDLPASTMKMLTALTVLPSLPPDRV-----VTISDEAARVDGTRVGLVPGVRYTVRDLAT 172

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAIL--MSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           A++  S ND + A  E   G +   A+L  M+  A  +G  +T+  + +GL    Q TTA
Sbjct: 173 AMLIASGNDATVALVEAAGGRD---AVLERMNRLAASLGAHDTVAGDPTGLDAPGQHTTA 229

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKMHNIDGIKTGYTR 246
            D A++G  +  N P    Y +I +     R      I NHN LL       GIK GYT 
Sbjct: 230 HDLAVIGRAVLNN-PTVRAYLTIPRAVLPGRGDERFEIANHNTLLGTYEGTIGIKNGYTI 288

Query: 247 NSGFNIV 253
            +G   V
Sbjct: 289 AAGATFV 295


>gi|226324960|ref|ZP_03800478.1| hypothetical protein COPCOM_02752 [Coprococcus comes ATCC 27758]
 gi|225206308|gb|EEG88662.1| hypothetical protein COPCOM_02752 [Coprococcus comes ATCC 27758]
          Length = 292

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 36/226 (15%)

Query: 69  FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK----LYLKEKT 124
           +K  E  YPAS TK+MT  +  E       +L+ Q+ +S  A   + S       L +  
Sbjct: 55  YKAHERLYPASTTKIMTALLAIE-----NANLDDQVTISGNADASSFSADAQVCGLAKGE 109

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
            +T    + AL+  S ND +TA  E++ GSE+ F  +M+ +A+++    T + N  GLHD
Sbjct: 110 VWTLRDLLGALLLYSGNDAATAIAEYVGGSEEAFVNMMNRRAQELMANGTHFMNPHGLHD 169

Query: 185 KNQITTARD-----------QAILGILLRKNFPQYYK---------YFSIRKFRYRNRII 224
            N  TTA D           +  + I+  + +  YY           F+      +  + 
Sbjct: 170 DNHYTTAYDLYLIFNECIKHEDFVNIIQSEAYTAYYTDVDGNSQEVLFTPTNLYAQGEVD 229

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVMG 269
              N        I G KTG T  +G+ ++   +   D+P +++VMG
Sbjct: 230 VPENV------TIVGGKTGTTDEAGYCLILMEKDSSDNPYISIVMG 269


>gi|218660826|ref|ZP_03516756.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli IE4771]
          Length = 245

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 69/136 (50%), Gaps = 4/136 (2%)

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
           ++IG    ++ N++GL +     TAR+   L   L++++P  Y YF++  F +      N
Sbjct: 1   REIGHDKAVFGNSTGLPNGKSRVTAREMVTLAAALQQSYPNLYPYFALPDFEWNKIFQRN 60

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA---LEL 283
            N LL      DG+ TG+T   G++IV S++     +   + G+ + +ER ++A   LE 
Sbjct: 61  RNPLLGLDLGADGLATGFTEGEGYSIVASVQRDGRRLFLALAGIASDKERTEEAKRVLEW 120

Query: 284 -ITSFLEKKTLKHQQT 298
            +T+F  ++     + 
Sbjct: 121 GLTAFENRQIFAEHEV 136


>gi|3043860|gb|AAC14599.1| extracellular protein Exp2 precursor [Lactococcus lactis subsp.
           cremoris MG1363]
          Length = 284

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 109/240 (45%), Gaps = 40/240 (16%)

Query: 55  SSIVIDVNKNQM--TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-- 110
           S+I ID +  ++       D     AS+TK++T Y++++ +   KL   T++P+S  A  
Sbjct: 39  SAIAIDASSGKILYAQNADDASTRIASITKLLTAYLVYKNVAENKLTWTTKVPISDYAYE 98

Query: 111 --ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                N S + L +   +T +  + AL+  SAN  + A  E I+GSE KF  +M+ + K 
Sbjct: 99  LTQNSNASNIPLAQNGQYTVKDLLNALLLPSANSAAIALAEKIAGSEPKFVDMMTKQMKD 158

Query: 169 IGMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSI 214
            G+ ++   NASGL + +                 +A+  A L   L ++FP+  +    
Sbjct: 159 WGITDSHLVNASGLPNDDLNGHIYPGSGASATNTMSAKAVATLSYHLIQDFPEVLQITKK 218

Query: 215 RKFRY-----RNRIITNHNKLLNKMH----NIDGIKT-----------GYTRNSGFNIVT 254
            +  +         +TN N++L+        +DG+KT           G T  +GF I+T
Sbjct: 219 TEIPFDTGNEEKMTLTNTNQMLSGFSTSRTGVDGLKTGSTSFQIDCFAGTTNQNGFRIIT 278


>gi|30261566|ref|NP_843943.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Ames]
 gi|47777937|ref|YP_018113.2| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49184396|ref|YP_027648.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Sterne]
 gi|170706241|ref|ZP_02896702.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0389]
 gi|229603016|ref|YP_002865975.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0248]
 gi|30255420|gb|AAP25429.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
           Ames]
 gi|47551642|gb|AAT30588.2| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49178323|gb|AAT53699.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Sterne]
 gi|170128775|gb|EDS97641.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0389]
 gi|229267424|gb|ACQ49061.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0248]
          Length = 374

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 106/217 (48%), Gaps = 16/217 (7%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K+     ++ VS  A     S +YLK      
Sbjct: 48  GKAEHEPQKIASITKIMTALLAAESGKMKE-----RVLVSNEAVRVEGSAIYLKPGQKVK 102

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS + F  LM+ KAK+I M++T + N  GL  D +
Sbjct: 103 LEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIRMKDTHFSNPHGLDGDGS 162

Query: 187 QITTARDQAILG--ILLRKNFPQYY--KYFSIRKFRYRNRIITNHNKLLNKMHNI-DGIK 241
             ++A D A+L    +  + F + +  K +    + Y  +   N +KL+   +    G K
Sbjct: 163 HYSSAYDMALLTRYAMGNETFKEIFGTKTYKSDSWDYPWK---NKHKLVTSYYEFATGGK 219

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           TG+T+ +G  +VT+     D +  +V+ +  S + D 
Sbjct: 220 TGFTKKAGRTLVTTA--SKDGLDLIVVTLSASSDWDD 254


>gi|266621645|ref|ZP_06114580.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
 gi|288866679|gb|EFC98977.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
          Length = 541

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 119/266 (44%), Gaps = 31/266 (11%)

Query: 34  ILFLSIIMISMASELHAKPKY---------SSIVIDVNKNQMTGFKQDEPRY-PASLTKM 83
           +L L ++M +  +   A P +         S IVID +   +   +    +Y PAS+TK+
Sbjct: 24  LLCLMLLMGAFPATALAAPDWPSGVSVQAESGIVIDADTGTVLWGQNIHNQYFPASITKI 83

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGILALITRSA 140
           MT  I+ E        L+  +  S  A        S   + E    + +  + AL+ +SA
Sbjct: 84  MTALIVIE-----TCSLDETVTFSHNAVFNVEAGSSNAGINEGDKLSVKDCLYALLLKSA 138

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL--G 198
           N+ + A  E ++GS + FA +M+ KAK++G  +T + N SGL+D    T+  D A++   
Sbjct: 139 NEAANALAEHVAGSTEAFADMMNAKAKELGCTDTHFANPSGLNDPEHYTSTYDMALIARA 198

Query: 199 ILLRKNFPQ-----YYKYFSIRKFRYRNRIITNHNKLLNK-----MHNIDGIKTGYTRNS 248
             L   F +     YYK             I   +K+L K        I G KTGYT  +
Sbjct: 199 AFLNPTFEEIDSTAYYK-LPPNSINPEGLTIYPGHKMLKKSTPYYYPGIVGGKTGYTTLA 257

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           G  +VT  R     ++AV++   T Q
Sbjct: 258 GNTLVTCARKNGLKLIAVILKGSTPQ 283


>gi|228936676|ref|ZP_04099469.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823015|gb|EEM68854.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 423

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 118/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S    E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VRELYHSIVIFSANGSSITLAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNAENSMSARD---MGILSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|167746445|ref|ZP_02418572.1| hypothetical protein ANACAC_01155 [Anaerostipes caccae DSM 14662]
 gi|167653405|gb|EDR97534.1| hypothetical protein ANACAC_01155 [Anaerostipes caccae DSM 14662]
          Length = 383

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 116/242 (47%), Gaps = 30/242 (12%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMT-LYIIFEYLQSKKLHLNTQI 104
           +L+AK   S+I++D    ++   K  + + P AS TK++T LYII      K  +L  + 
Sbjct: 29  KLYAK---SAILMDAGSGRVLFDKSGKSKMPNASTTKILTCLYII------KHCNLEEEA 79

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
            VSK AA Q    L  +    +  +  +  L+  S ND +    E  +GS + FA  ++ 
Sbjct: 80  TVSKNAAAQPQVHLGARAGEKYKVKDLLYGLMLESYNDCAVILAEHAAGSTENFAKKLNA 139

Query: 165 KAKKIGMQNTIYKNASGLH--DKNQI--TTARDQAILGILLRKNFPQYYKYFSIRKFRY- 219
           +A+  G ++T +   +GL   DKN I  TTA D A    L+ K   +  ++  I + +  
Sbjct: 140 EARSYGAKSTHFVTPNGLDRTDKNGIHSTTAYDLA----LIMKQCIKNKEFLEITRAKSH 195

Query: 220 --------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM--G 269
                   R+    NHN LL+ M      KTG+T  +G+  V +++     ++AVV+  G
Sbjct: 196 SFHDASGKRSFTCNNHNALLSMMDGAVSGKTGFTSKAGYCYVGAVKKNGMTMIAVVLACG 255

Query: 270 MP 271
            P
Sbjct: 256 WP 257


>gi|291518495|emb|CBK73716.1| D-alanyl-D-alanine carboxypeptidase [Butyrivibrio fibrisolvens
           16/4]
          Length = 384

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 18/210 (8%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-----LKEKTYFTTEQG 131
           PAS TK+MT  +  E +++ ++ L T + VS TA    P         ++    F  +Q 
Sbjct: 144 PASTTKIMTALLTIEAIEAGQISLETPVIVSPTAIAGMPLDASHVSPRIQAGEVFNIDQL 203

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + A++  S         E ++GS   F  +M+ KA  +G  NT + N SG  DKN  T A
Sbjct: 204 LTAMMVSSDCHSCNVLAEVVAGSVPDFVSMMNVKAAALGCTNTNFTNPSGYPDKNMYTNA 263

Query: 192 RDQAILGILLRKNFPQYYKYFSIR-------KFRYRNRIITNHNKLLNKMHN-----IDG 239
               ++     K+ P + KYF++              R++ N + ++N         + G
Sbjct: 264 YSLYLITANAIKH-PLFNKYFNVSNAVLPATNLCATPRVLENTDAIINPTSGYYNPYVIG 322

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            KTG    +G  +V   +  +  +++VV+G
Sbjct: 323 GKTGTANRAGQCLVCVAKQNEKTVISVVLG 352


>gi|139438318|ref|ZP_01771871.1| Hypothetical protein COLAER_00860 [Collinsella aerofaciens ATCC
           25986]
 gi|133776515|gb|EBA40335.1| Hypothetical protein COLAER_00860 [Collinsella aerofaciens ATCC
           25986]
          Length = 469

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 121/283 (42%), Gaps = 31/283 (10%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G   DE    AS+TK+MT  +  E  +     ++ ++ VS  AAT   S   L E    T
Sbjct: 100 GRGADEQVKIASITKVMTAILTVENCK-----MDEKVTVSNAAATVGNSTAGLLEGDELT 154

Query: 128 TEQGILALITRSANDVSTAFGEFIS--------GSEKKFAILMSNKAKKIGMQNTIYKNA 179
            EQ +  L+  S ND +    E++          +E  F   M+ +AKK+G   T+++N 
Sbjct: 155 VEQALRGLMIPSGNDAAIVLAEYVGKKIDPKTKDAEATFVKAMNERAKKLGCTGTLFENP 214

Query: 180 SGLH-DK---NQITTARDQAIL------GILLRKNFPQYYKYFSIRKFRYRN--RIITNH 227
            GL  D+   +  +TA D A++         +R+       +  +      +    +  H
Sbjct: 215 HGLDFDEWAGDMHSTAHDVALMMQEAMKNDTIREVVASEDSWIEVTGADGTDHSHSMDTH 274

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           N LL +  NI G KTG T ++G+   ++     D I  V++   T+ +R      L+  +
Sbjct: 275 NYLLGQDGNIGG-KTGTTDDAGYCFTSAYNRDGDEIYTVILNSTTTDQRFTDTATLVNWY 333

Query: 288 LEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
            +     H+ T    N    +   + ++ ++ +T    K IDA
Sbjct: 334 YD-----HKVTVAIANTQEKTANGNPLMARISQTDWTDKTIDA 371


>gi|223985343|ref|ZP_03635415.1| hypothetical protein HOLDEFILI_02721 [Holdemania filiformis DSM
           12042]
 gi|223962698|gb|EEF67138.1| hypothetical protein HOLDEFILI_02721 [Holdemania filiformis DSM
           12042]
          Length = 498

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 95/214 (44%), Gaps = 20/214 (9%)

Query: 58  VIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           ++D++  Q+   K  E + YPAS+TKMMTL +  E   +    +     V    A  + S
Sbjct: 95  MVDMDTGQVMIDKGSEDQIYPASMTKMMTLLVAIENAPALDSTMTLGPEVFAGLAEAHAS 154

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
               K+    + +  +  L   S  D + A     +GSE  F  LM+ KA ++GM  T +
Sbjct: 155 VAGFKQGETVSVKDLLYGLFLPSGADAAQALALEEAGSETAFVGLMNEKAAELGMTGTHF 214

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYRNRIITN----HNKL 230
            N SGLHD +  TT RD   L  L+R     P + + F  R++     + T      + L
Sbjct: 215 VNTSGLHDPDHYTTLRD---LETLMRYALENPTFNEIFQTRRYTATPSLHTGGLVWESTL 271

Query: 231 LNKMHNID----------GIKTGYTRNSGFNIVT 254
             K+ + D          G KTGYT  +G  + +
Sbjct: 272 FAKISSTDPAKIDNDSILGGKTGYTNPAGLCLAS 305


>gi|290891993|ref|ZP_06554990.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290558587|gb|EFD92104.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
          Length = 272

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 104/206 (50%), Gaps = 12/206 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL---KEKTYFTTEQGILA 134
           ASL+K+MT +++ E + + +L  +  + + +     +PS + L    +K  ++      A
Sbjct: 57  ASLSKLMTAFLVLEAVDNNELSWDETLDLVR---LDDPSAVSLYAITQKRTWSVRDLYSA 113

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGL--HDKNQITTA 191
           ++T SAND +   G+ + G++  F   M+ +A K+GM + T + +ASGL    K  ++T 
Sbjct: 114 MLTMSANDAAETLGDRLDGAD--FPKEMNRQATKLGMSSRTNFVSASGLDVDGKTAVSTT 171

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-ITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           +D  +L   L    P+  +  S           + + N LL  +  +DG+KTG+T  +G+
Sbjct: 172 KDLFLLSSKLISTHPEVLETTSKPTVTTDEGAKLESTNDLLGSIQGLDGLKTGFTDEAGY 231

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQER 276
             + +       ++++V+   T ++R
Sbjct: 232 CFIGTAERGGKRVISIVLDAGTPEKR 257


>gi|229099816|ref|ZP_04230740.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
 gi|228683562|gb|EEL37516.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
          Length = 423

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 127/259 (49%), Gaps = 42/259 (16%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
            ++   +++  SAN  S A  E ++GSEK F  L ++ AKK+G++   + NA+GL++ + 
Sbjct: 113 VKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANDHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNGENSMSARD---MGILSKTIITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGSDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMDERFTE 287

Query: 280 ALELI----TSFLEKKTLK 294
           +  LI     SF EK+ LK
Sbjct: 288 SRALIEYGFNSF-EKQKLK 305


>gi|262373941|ref|ZP_06067218.1| D-alanyl-D-alanine endopeptidase [Acinetobacter junii SH205]
 gi|262310952|gb|EEY92039.1| D-alanyl-D-alanine endopeptidase [Acinetobacter junii SH205]
          Length = 353

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 111/246 (45%), Gaps = 29/246 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----T 109
           +++V+D    ++   K      P AS+TK+MT  +  +     +L ++ +I + +     
Sbjct: 111 AALVMDAQTGEVLYSKNSSLAVPIASITKVMTAVVTAD----ARLDMSEEITLQQIDFAG 166

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A  +N S       T    E  + AL+ +S N  + A      G    F   M+ KA+++
Sbjct: 167 AGGKNSSSTLRAGDTMNRAELLLFALM-KSENPAAAALARTYPGGRSAFVAAMNAKARQL 225

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR----------Y 219
           GM +T Y  ++GL D + +++ARD   LGIL+        +Y  IR+F           Y
Sbjct: 226 GMTSTRYAESTGL-DPHNVSSARD---LGILVSA----ASQYGLIRQFSTTPTYDFNLGY 277

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           R     N N L+ N   NI+  KTGY   +G  +V        P V V++G  TSQ R  
Sbjct: 278 RVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVVVLLGASTSQARTN 337

Query: 279 KALELI 284
            A  L+
Sbjct: 338 DATNLL 343


>gi|325124211|gb|ADY83734.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 335

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 119/263 (45%), Gaps = 28/263 (10%)

Query: 39  IIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYL- 93
           I  I   S  +A+P  S+   +V+D    ++   K      P AS+TK+MT  +  +   
Sbjct: 74  IAPIRDTSGYNAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKVMTAVVTADARL 133

Query: 94  -QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
             S+++ L  QI  +      + S L + +K      + +L  + +S N  + A      
Sbjct: 134 NMSEEITLE-QIDFAGAGGKNSSSTLRVGDK--MNRAEVLLFALMKSENPAAAALARTYP 190

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           G    F   M+ KA+ +GM +T Y  ++GL  +N +++ARD   LGIL+        +Y 
Sbjct: 191 GGRPAFVAAMNAKARALGMSSTHYYESTGLDPRN-VSSARD---LGILVST----ASQYG 242

Query: 213 SIRKFR----------YRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
            IR+F           YR     N N L+ N   NI+  KTGY   +G  +V        
Sbjct: 243 LIRQFSTTPTYDFNLGYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSR 302

Query: 262 PIVAVVMGMPTSQERDQKALELI 284
           P V V++G P++Q R+  A  L+
Sbjct: 303 PAVIVLLGEPSTQARNNDATNLL 325


>gi|258513818|ref|YP_003190040.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257777523|gb|ACV61417.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 373

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 88/202 (43%), Gaps = 27/202 (13%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +E  YPASLTKMMT  +  E L   K  +     V +  +  + S    +          
Sbjct: 109 EEKIYPASLTKMMTAIVAIENLPDLKKEITLTDSVFRGLSEADASMAGFRPGENVRAIDL 168

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +   +  S  +      ++I+GSEK F  +M+ KA  +GM NT ++N++GL ++N  TT 
Sbjct: 169 LYGALLPSGAESCVELADYIAGSEKDFVGMMNQKAADLGMYNTYFENSTGLQNENHYTTV 228

Query: 192 RDQAIL------GILLRKNF-------------PQYYKYFSIRKFRYRNRIITNHNKLLN 232
           +D A+L          R+ F             P    ++S       NR IT+  K+L 
Sbjct: 229 KDLAVLLSYALQNDTFREIFTSTRHSTPPTNKHPDGITFYSTMFDELNNRSITD-GKIL- 286

Query: 233 KMHNIDGIKTGYTRNSGFNIVT 254
                 G KTGYT  +G  + +
Sbjct: 287 ------GGKTGYTAEAGLCLAS 302


>gi|301052915|ref|YP_003791126.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis CI]
 gi|300375084|gb|ADK03988.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 428

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 103/201 (51%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 73  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 127

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GLHD N  TT  D
Sbjct: 128 ILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYD 187

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +      ++I G KTG+T N  
Sbjct: 188 MAMITRGVQK-YPEILQVMNTKRTTVTTSRQTVSIFNKSTYFENPYSIGG-KTGFT-NEA 244

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 245 RNTLVLLNEKDGNRIINVVMA 265


>gi|315659824|ref|ZP_07912683.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Staphylococcus lugdunensis M23590]
 gi|315495112|gb|EFU83448.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Staphylococcus lugdunensis M23590]
          Length = 411

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 140/312 (44%), Gaps = 52/312 (16%)

Query: 29  QLMGKILFLSIIM---------------ISMASELHAKPKYS--SIVIDVNKNQ-MTGFK 70
           Q+ G +L L + M               I+ A + H    Y+  S+++   + Q +  + 
Sbjct: 3   QIKGFVLLLCLCMMFSPLTTYAAKTPTQIAEAEKQHIAQHYNPKSMIVTTQQGQILYDYH 62

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA--TQNPSKL---YLKEKTY 125
           Q +   PAS+TK+MT+Y++ + +   K+ L  ++ VS   A  ++ P       +K KTY
Sbjct: 63  QHDNVDPASITKLMTIYLVLDDIDKGKIKLTDEVKVSGRYAKMSRIPGLTTFPLIKGKTY 122

Query: 126 FTTE---QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
              +   QG LA    S+N       E I G+   F   M+ KA+ + M++T + N SG 
Sbjct: 123 TIQQLLKQGALA----SSNAAMLVLAEHIDGNSSDFTHRMNRKAQALHMRHTHFNNPSGA 178

Query: 183 HDKNQI---------------TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
            D   I               TTA+D A+L   L K  P+  K   +   +    ++ N 
Sbjct: 179 -DNRLIKPFAPSQYKQQHFSKTTAKDMAVLTQQLVKQHPKVLKITRLTSDKQHGHMLKNT 237

Query: 228 NKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM-PTSQERDQKALE 282
           N  L    + +   DG+KTG T N G+N+  + +  +  I +V+  + P + ER +   +
Sbjct: 238 NLSLPAQADGLAGADGLKTG-TSNHGYNLALTAKQNNLRIHSVLFQVQPFADERAKHVRQ 296

Query: 283 LITSFLEKKTLK 294
            +++ + ++  K
Sbjct: 297 QLSNIMVRRAFK 308


>gi|145512197|ref|XP_001442015.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124409287|emb|CAK74618.1| unnamed protein product [Paramecium tetraurelia]
          Length = 302

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 123/270 (45%), Gaps = 27/270 (10%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           S+A  L AK   S IV+D N    +  + +++ R  AS+TK+MT Y++    ++  +  N
Sbjct: 36  SLAPRLTAK---SWIVVDSNSGDVLYAYNENQRREIASITKIMTFYVVLSMCKTMNVQTN 92

Query: 102 -TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF---------- 150
            T   VS  A+    +   L +    + +     L+  S ND +  F E           
Sbjct: 93  NTYAEVSLQASLVGGTTANLLKGDILSIDDLFYGLMLPSGNDAAMTFAENFGIYAMYQNK 152

Query: 151 ISGSEK--KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA-ILGILLRKNFPQ 207
           I G+     F   M+NKA+++ M  T Y N  GL++KN +++A D A +   LL+ +F +
Sbjct: 153 IKGNNPIIYFIQEMNNKARELRMTQTTYANPHGLNNKNNLSSAYDVAKLCNQLLKDDFFK 212

Query: 208 -------YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
                  ++      +   R+ +  N NKLL       GIKTG T  +G  + +  +  +
Sbjct: 213 KVVNTKIHFCTIQDEEGFTRDVMWENTNKLL--YQGFRGIKTGNTSVAGPCLASYYQSNN 270

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEK 290
                V++G    ++R  + ++L+   L +
Sbjct: 271 RSFTIVILGCRNQEDRWSETMQLVQWCLSQ 300


>gi|299542091|ref|ZP_07052407.1| D-alanyl-D-alanine carboxypeptidase precursor [Lysinibacillus
           fusiformis ZC1]
 gi|298725406|gb|EFI66054.1| D-alanyl-D-alanine carboxypeptidase precursor [Lysinibacillus
           fusiformis ZC1]
          Length = 443

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 117/243 (48%), Gaps = 30/243 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----K 108
           ++I+ID +  ++  F+Q  D     AS+TKMMT Y++ + + + K+  + +  V+    +
Sbjct: 41  AAILIDADSGKIL-FEQNADTSLGIASMTKMMTEYLLLDAIDAGKVKWDQEYHVTDYTYR 99

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            +  +  S + L+    +T  +   A+   SAN  + A  E I+GSE +F  LM+ KA++
Sbjct: 100 MSQNRALSNVPLRRDGSYTIRELYEAMAIYSANAATVAIAETIAGSETEFLKLMNKKAEE 159

Query: 169 IGMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSI 214
           +G++   + NA+GL++ +               +  A+  A L   L K+ P+  +   I
Sbjct: 160 LGLEGYKFVNATGLNNADLFGMHPSGTGPEDENVMPAKSVAKLAYHLLKDHPKVLETSKI 219

Query: 215 RKFRYRNRI-----ITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            K  +R        ++N N +L  +      +DG+KTG T  +G     +       ++A
Sbjct: 220 AKKTFREGTEDAIKMSNWNFMLPGLVYEYQGVDGLKTGTTNFAGHCFTGTAERNGTRLIA 279

Query: 266 VVM 268
           VVM
Sbjct: 280 VVM 282


>gi|167756632|ref|ZP_02428759.1| hypothetical protein CLORAM_02169 [Clostridium ramosum DSM 1402]
 gi|167702807|gb|EDS17386.1| hypothetical protein CLORAM_02169 [Clostridium ramosum DSM 1402]
          Length = 342

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 115/255 (45%), Gaps = 13/255 (5%)

Query: 35  LFLSIIMISMASELHAKP--KYSSIVIDVNKN-QMTGFKQDEPRYPASLTKMMTLYIIFE 91
           L +S++M  + + + A P    S IV++ +    + G  QD  +  AS++K+MT  I  E
Sbjct: 12  LIISLMMTLVNTNVSAVPFQGKSYIVMEASHQIVIEGSNQDYIQSVASISKIMTCIIAIE 71

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
                 + L+T I V  T      S +Y+      +    +  L+ RS ND +    + +
Sbjct: 72  -----NMELDTIITVDDTINKAWGSGVYIHIGDKISLRDLLYGLMLRSGNDAAVMIAKAV 126

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGL--HDKNQITTARDQAILGILLRKNFPQYY 209
                KF  +M++KAK++ + +T + N +GL   D    +T  D A L     +N P + 
Sbjct: 127 GKEIPKFVDMMNDKAKELQLHSTTFSNPTGLDEEDNGNQSTVYDMARLMAYCHQN-PIFN 185

Query: 210 KYFSIRKFRYR--NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           +  S ++++    N    N NKLL       G KTG+T+ +   ++T  R  D  ++ V 
Sbjct: 186 EIVSTKEYKREDGNGTWHNKNKLLTNYEYCIGGKTGFTKKARRTLITMARKDDLDLIIVT 245

Query: 268 MGMPTSQERDQKALE 282
                  E  QK  E
Sbjct: 246 FNCGNDFEFHQKKFE 260


>gi|56808710|ref|ZP_00366431.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Streptococcus
           pyogenes M49 591]
          Length = 401

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 119/238 (50%), Gaps = 27/238 (11%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDE--PRYPASLTKMMTLYIIFEYLQSKKLH 99
           I +A++     +++ IV++ +  ++  +++D   P   ASLTK++T Y++ + ++S +L 
Sbjct: 11  IVLAADFQVGAEHA-IVVEADSGRVL-YEKDAKTPDAIASLTKLVTAYLVLDKVKSGQLQ 68

Query: 100 LNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
           L+ Q+ +S  A      ++ S +   +KTY + +  + A +  S+N  + A  E ++GSE
Sbjct: 69  LSDQVNLSDYAFELTKDRSLSNVPFDKKTY-SVQDLLTATLVASSNSAAIALAEKVAGSE 127

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAILGILL 201
             F   M  +    G+ +    NASGL               ++  + +A+D AI+ + L
Sbjct: 128 LHFVNQMREQLSHWGITSGKILNASGLPNEVLKDHRYPGSALEEENMLSAQDVAIVTMHL 187

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTS 255
            ++FP+  +     +  +    I + N+LL  M      +DG+KTG T  +G  +V +
Sbjct: 188 LEDFPEILEITKQTEVDFAGNSIKSFNQLLPGMAKGRAGVDGLKTGTTDLAGHCLVVT 245


>gi|229118879|ref|ZP_04248226.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
 gi|228664535|gb|EEL20030.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
          Length = 423

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 120/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
            ++   +++  SAN  S A  E ++GSEK F  L ++ AKK+G++   + NA+GL++ + 
Sbjct: 113 VKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANDHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNGENSMSARD---MGILSKTIITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGSDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           +  LI
Sbjct: 288 SRALI 292


>gi|223985877|ref|ZP_03635915.1| hypothetical protein HOLDEFILI_03221 [Holdemania filiformis DSM
           12042]
 gi|223962143|gb|EEF66617.1| hypothetical protein HOLDEFILI_03221 [Holdemania filiformis DSM
           12042]
          Length = 335

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 126/264 (47%), Gaps = 27/264 (10%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNK-NQMTGFKQDEPRYPASLTKMMTLYIIFE- 91
           + FL++ +    + LHA   Y  IVI  N  N +    + E R  AS++K+MT  +  E 
Sbjct: 6   VFFLTLTLF--WTPLHADGSY--IVISGNDGNVLEAENEHEVRSIASISKIMTAVVALEN 61

Query: 92  --YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
             Y+         Q  +         S +++++    +    +  ++ +S ND + A   
Sbjct: 62  GDYID--------QWIIGDEVTNVTGSMIWIQKGQQVSMRSLLYGMMLKSGNDAAVAIAH 113

Query: 150 FISG-SEKKFAILMSNKAKKIGMQNTIYKNASGL--HDKNQITTARDQAILGILLRKNFP 206
            + G S +KF  +M+ KA  +GM++T + N +G+   ++   +TA D A+L +      P
Sbjct: 114 RVGGGSVEKFIQMMNEKAVALGMKDTEFHNPNGMDVEEEGNYSTAYDMAVL-MQYAMTLP 172

Query: 207 QYYKYFSIRKF--RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           Q+ +  + + +   + +R   N NKLL+      G KTG+T  +G  +VT+ +  +   +
Sbjct: 173 QFREIVATQYYTSEWGSRW-KNSNKLLSNFEFCTGGKTGFTNKAGETLVTAAQNGELEYI 231

Query: 265 AVVMGMPT----SQERDQKALELI 284
            V + +P      +++ +KA+E+ 
Sbjct: 232 VVTLAVPDRWTFHEQKYRKAMEMC 255


>gi|89100964|ref|ZP_01173810.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. NRRL
           B-14911]
 gi|89084335|gb|EAR63490.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. NRRL
           B-14911]
          Length = 433

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 107/217 (49%), Gaps = 26/217 (11%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGIL 133
           AS+TK+MT Y++ E ++  K+  + +  VS    K +  +  S + L+    +  ++   
Sbjct: 49  ASMTKIMTEYLLLEAIKEGKVKWDQEYAVSEYVWKVSQDRALSNVPLRRDGKYNIKELYE 108

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-----QI 188
           A+   SAN  + A  E I+GSE  F  +M++KA+++G+++  + N+SGL++++     Q+
Sbjct: 109 AMSIYSANGATIAIAETIAGSESNFVKMMNDKAEELGLKDYKFVNSSGLNNRDLKGSHQV 168

Query: 189 TTARDQAI--------LGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM- 234
             A D+ +        L   L  ++P+  +  SI    +R        + N N +L  + 
Sbjct: 169 GGAEDENVMSARATAKLAQRLLHDYPEILETTSIPTKNFREGTDDEIKMDNWNWMLPSLV 228

Query: 235 ---HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                +DG+KTG T  +G+    +     +  + VVM
Sbjct: 229 FGYEGVDGLKTGTTDFAGYCFTGTATRDGNRYITVVM 265


>gi|94988566|ref|YP_596667.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS9429]
 gi|94992388|ref|YP_600487.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS2096]
 gi|94542074|gb|ABF32123.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS9429]
 gi|94545896|gb|ABF35943.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS2096]
          Length = 451

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 123/252 (48%), Gaps = 33/252 (13%)

Query: 34  ILFLSIIMIS------MASELHAKPKYSSIVIDVNKNQMTGFKQDE--PRYPASLTKMMT 85
           ILF  ++  S      +A++     +++ IV++ +  ++  +++D   P   ASLTK++T
Sbjct: 47  ILFFMVLTCSGFGKTVLAADFQVGAEHA-IVVEADSGRVL-YEKDAKTPDAIASLTKLVT 104

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
            Y++ + ++S +L L+ Q+ +S  A      ++ S +   +KTY + +  + A +  S+N
Sbjct: 105 AYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDKKTY-SVQDLLTATLVASSN 163

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQ 187
             + A  E ++GSE  F   M  +    G+ +    NASGL               ++  
Sbjct: 164 SAAIALAEKVAGSEPHFVNQMREQLSHWGITSGKILNASGLPNEVLKDHRYPGSTLEEEN 223

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTG 243
             +A+D A++ + L ++FP+  +     +  +    I + N+LL  M      +DG+KTG
Sbjct: 224 TLSAQDVAVVTMHLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMAKGRAGVDGLKTG 283

Query: 244 YTRNSGFNIVTS 255
            T  +G  +V +
Sbjct: 284 TTDLAGHCLVVT 295


>gi|94989757|ref|YP_597857.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS10270]
 gi|94543265|gb|ABF33313.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS10270]
          Length = 410

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 134/303 (44%), Gaps = 26/303 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R I L+   LF +   +S   E     K++ I +D+   ++   K  +   P AS++K
Sbjct: 2   IKRLISLVVIALFFAASTVS-GEEYSVTAKHA-IAVDLESGKVLYEKDAKEVVPVASVSK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ +   KL+ ++ + +S    +       S + L ++ Y T ++ + AL+  
Sbjct: 60  LLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPLDKRKY-TVKELLSALVVN 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           +AN  + A  E I G+E KF   M  + ++ G+ +    N++GL               D
Sbjct: 119 NANSPAIALAERIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
                 A D AI+   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIFAGQTIYSYNYMLKGMPCYREGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
             GY++ +G + V +       ++ VV+    S E D    +     L+   +  Q+   
Sbjct: 239 FVGYSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQL 298

Query: 301 KDN 303
            +N
Sbjct: 299 IEN 301


>gi|293610046|ref|ZP_06692347.1| D-alanyl-D-alanine endopeptidase [Acinetobacter sp. SH024]
 gi|292827278|gb|EFF85642.1| D-alanyl-D-alanine endopeptidase [Acinetobacter sp. SH024]
          Length = 348

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 117/256 (45%), Gaps = 28/256 (10%)

Query: 46  SELHAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYL--QSKKLH 99
           S  +A+P  S+   +V+D    ++   K      P AS+TK+MT  +  +     S+++ 
Sbjct: 94  SGYNAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKVMTAVVTADARLNMSEEIT 153

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           L  QI  +      + S L + +K      + +L  + +S N  + A      G    F 
Sbjct: 154 LE-QIDFAGAGGKNSSSTLRVGDK--MNRAEVLLFALMKSENPAAAALARTYPGGRPAFV 210

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR- 218
             M+ KA+ +GM +T Y  ++GL  +N +++ARD   LGIL+        +Y  IR+F  
Sbjct: 211 AAMNAKARALGMNSTHYYESTGLDPRN-VSSARD---LGILVST----ASQYGLIRQFST 262

Query: 219 ---------YRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                    YR     N N L+ N   NI+  KTGY   +G  +V        P V V++
Sbjct: 263 TPTYDFNLGYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLL 322

Query: 269 GMPTSQERDQKALELI 284
           G P++Q R+  A  L+
Sbjct: 323 GEPSTQARNNDATNLL 338


>gi|259046993|ref|ZP_05737394.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella adiacens
           ATCC 49175]
 gi|259036312|gb|EEW37567.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella adiacens
           ATCC 49175]
          Length = 471

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 113/250 (45%), Gaps = 34/250 (13%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI------- 104
           PK S +V   N   +     D    PASL+K+MT++I+++ ++  K+ L+ ++       
Sbjct: 67  PKASLVVSIANGEILWQENPDRAVDPASLSKLMTIFIVYDAIKEGKISLSDKVVPTATDE 126

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
            +SK  A  N   + L     +  E+ +   +  S+N  +      ++ +  +F  LM+ 
Sbjct: 127 AISKITALSN---VPLTAGVEYPVEELVKMALLPSSNAATILLSHLVNDNSDEFVDLMNQ 183

Query: 165 KAKKIGMQNTIYKNASGL-------------HDKNQI--TTARDQAILGILLRKNFPQYY 209
           KAK++GM NT ++ A+G              H  NQ   TTARD A + I L K+ P+  
Sbjct: 184 KAKELGMTNTKFEGATGAVAEDFQGHYTVKRHSMNQPNQTTARDLAKMVIALYKSHPEIT 243

Query: 210 KY-----FSIRKFRYRNRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           +Y      ++       + I N N  +         I G+KTG +   GFN +   +   
Sbjct: 244 QYTRNSTLTVMSGTPYAQTIKNTNHSVQGDLLAYPGIIGLKTGTSERDGFNYIGIYQKDG 303

Query: 261 DPIVAVVMGM 270
             ++ +V+G+
Sbjct: 304 VELLDIVLGV 313


>gi|229195572|ref|ZP_04322338.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
 gi|228587821|gb|EEK45873.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
          Length = 407

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 103/201 (51%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 52  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 106

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GLHD N  TT  D
Sbjct: 107 ILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYD 166

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +      ++I G KTG+T N  
Sbjct: 167 MAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPYSIGG-KTGFT-NEA 223

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 224 RNTLVLLNEKDGNRIINVVMA 244


>gi|52144058|ref|YP_082770.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
 gi|196040650|ref|ZP_03107949.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           NVH0597-99]
 gi|51977527|gb|AAU19077.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
 gi|196028440|gb|EDX67048.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           NVH0597-99]
          Length = 428

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 103/201 (51%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 73  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 127

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GLHD N  TT  D
Sbjct: 128 ILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYD 187

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +      ++I G KTG+T N  
Sbjct: 188 MAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPYSIGG-KTGFT-NEA 244

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 245 RNTLVLLNEKDGNRIINVVMA 265


>gi|291527816|emb|CBK93402.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale M104/1]
          Length = 465

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 114/249 (45%), Gaps = 32/249 (12%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
            ++V++VN   +   K   E  YPAS+TK++T Y+    L  K   ++ ++  SK A   
Sbjct: 36  CAVVMEVNTGTVLYEKNSHEKHYPASITKILTTYLTI--LNCK---MDEKVTFSKEAVKE 90

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF----ISGSEKKFAILMSNKA 166
           ++   S +        T EQ +  ++  SAN+ + A  E     + G    F  +M+ +A
Sbjct: 91  SSDGSSSIKRDVGEEMTMEQTLYGVMLESANECAYAAAEHTGKKLGGDYSTFIDMMNKEA 150

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-------RY 219
           K++G  +T + NA+GL D+N  T+A D  ++     +N  ++ K    + +         
Sbjct: 151 KELGCTDTHFNNANGLPDENHWTSAYDMGLISCAAYRN-DEFRKITGTKTYIIPPTNKHT 209

Query: 220 RNRIITNHNKLLNKM--------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
            +  + NH+ +L+          H+  G KTGYT  +   +VT        + AV+M   
Sbjct: 210 EDTPLYNHHAMLHPFKSYSQFVNHDCTGGKTGYTSVANSTLVTYAEKDGLTLCAVIM--- 266

Query: 272 TSQERDQKA 280
            +Q  DQ A
Sbjct: 267 NAQSPDQYA 275


>gi|229183569|ref|ZP_04310793.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
 gi|228599979|gb|EEK57575.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
          Length = 407

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 103/201 (51%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 52  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 106

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GLHD N  TT  D
Sbjct: 107 ILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYD 166

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +      ++I G KTG+T N  
Sbjct: 167 MAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPYSIGG-KTGFT-NEA 223

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 224 RNTLVLLNEKDGNRIINVVMA 244


>gi|225389445|ref|ZP_03759169.1| hypothetical protein CLOSTASPAR_03193 [Clostridium asparagiforme
           DSM 15981]
 gi|225044492|gb|EEG54738.1| hypothetical protein CLOSTASPAR_03193 [Clostridium asparagiforme
           DSM 15981]
          Length = 448

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 94/221 (42%), Gaps = 23/221 (10%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  +D  R  AS TK+MT  +  E      +     +  +K AA Q    L ++    F 
Sbjct: 83  GKGEDTIRPMASTTKIMTCILALELGNPDDV-----VTATKEAAGQPKVHLGVQSGQTFY 137

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
            +  + +L+  S ND +    E I GS   FA LM+ KAK +G +NT +   +GL  K  
Sbjct: 138 LKDLLYSLMLESHNDAAVMIAEHIGGSVPGFARLMNEKAKALGCENTYFITPNGLDAKET 197

Query: 187 --------QITTARDQA-ILGILL-----RKNF---PQYYKYFSIRKFRYRNRIITNHNK 229
                     TTA D A I+   +     R+ F    Q   YF        +   TNHN 
Sbjct: 198 DEAGVEHVHSTTAADLARIMAYCVNLSPKRQEFLEITQTQNYFFTDVPGKHSYNCTNHNA 257

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
            L  M  +   KTG+T  +G++ V ++     P V  ++G 
Sbjct: 258 FLTMMDGVVSGKTGFTGGAGYSYVAAMEKDGRPYVIALLGC 298


>gi|21909750|ref|NP_664018.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
           pyogenes MGAS315]
 gi|28895132|ref|NP_801482.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase)
           [Streptococcus pyogenes SSI-1]
 gi|94987881|ref|YP_595982.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS9429]
 gi|21903934|gb|AAM78821.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
           pyogenes MGAS315]
 gi|28810377|dbj|BAC63315.1| putative penicillin-binding protein (D-alanyl-D-alanine
           carboxypeptidase) [Streptococcus pyogenes SSI-1]
 gi|94541389|gb|ABF31438.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS9429]
          Length = 410

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 134/303 (44%), Gaps = 26/303 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R I L+   LF +   +S   E     K++ I +D+   ++   K  +   P AS++K
Sbjct: 2   IKRLISLVVIALFFAASTVS-GEEYSVTAKHA-IAVDLESGKVLYEKDAKEVVPVASVSK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ +   KL+ ++ + +S    +       S + L ++ Y T ++ + AL+  
Sbjct: 60  LLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPLDKRKY-TVKELLSALVVN 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           +AN  + A  E I G+E KF   M  + ++ G+ +    N++GL               D
Sbjct: 119 NANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
                 A D AI+   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIFAGQTIYSYNYMLKGMPCYREGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
             GY++ +G + V +       ++ VV+    S E D    +     L+   +  Q+   
Sbjct: 239 FVGYSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQL 298

Query: 301 KDN 303
            +N
Sbjct: 299 IEN 301


>gi|332522835|ref|ZP_08399087.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314099|gb|EGJ27084.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 412

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 123/264 (46%), Gaps = 26/264 (9%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +E +  P  S I  +V+  ++   K  + + P ASL+K++T Y++++ +QS  L  +T +
Sbjct: 22  AEAYKLPARSGIAFEVSTGKILYEKDAKKKLPIASLSKVLTTYLVYKEVQSGNLSWDTPV 81

Query: 105 PVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
            +S    +  A  + S + L  + Y T E+ + A++  +AN  + A  E ISG+E  F  
Sbjct: 82  KISNYPYELTANYSISNVPLDARQY-TVEELLTAMLVTNANSPAIALAEKISGTEPLFVD 140

Query: 161 LMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFP 206
            M  + +   +      NASGL               D     +A D AI+   L ++FP
Sbjct: 141 KMQKQLRDWKIHKANLVNASGLSNEQLGNHIYPNSQKDAENKMSALDLAIVTRHLLQDFP 200

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHN----IDGIKTGYTRNSGFNIVTSLRYKDDP 262
           Q  +        +R   I ++N LL  M N     +G+   ++ N+G +++TS       
Sbjct: 201 QVLELTKKPAATFRGDRIFSYNFLLEGMPNHRIGANGLFVAFSENNGASLITSSIENKMS 260

Query: 263 IVAVVMGMPTSQERDQKALELITS 286
           +V++++   T + +D K     T+
Sbjct: 261 VVSIILN--TEEVKDNKLAHFTTA 282


>gi|229090329|ref|ZP_04221573.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
 gi|228693023|gb|EEL46740.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
          Length = 406

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 103/201 (51%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 51  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 105

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GLHD N  TT  D
Sbjct: 106 ILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYD 165

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +      ++I G KTG+T N  
Sbjct: 166 MAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPYSIGG-KTGFT-NEA 222

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 223 RNTLVLLNEKDGNRIINVVMA 243


>gi|50083539|ref|YP_045049.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter sp. ADP1]
 gi|49529515|emb|CAG67227.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter sp. ADP1]
          Length = 352

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 112/244 (45%), Gaps = 25/244 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYL--QSKKLHLNTQIPVSKTAA 111
           +++V+D    ++   K      P ASLTK+MT  +  +     S+++ L  QI  +    
Sbjct: 110 AALVMDAQTGEVLYSKNTNTSMPIASLTKLMTAVVTSDARLDMSEEITLE-QIDFAGAGG 168

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S L + +K      + +L  + +S N  + A      G    F   M+ KA+++GM
Sbjct: 169 KNSSSTLRVGDK--MNRAEVLLFALMKSENPAAAALARTYPGGRPAFVAAMNAKARQLGM 226

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR----------YRN 221
            +T Y  +SGL D + +++ARD   LGIL+        +Y  IR+F           YR 
Sbjct: 227 TSTHYVESSGL-DPHNVSSARD---LGILVSA----ASQYGLIRQFSTTPSYDFNLGYRV 278

Query: 222 RIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
               N N L+ N   NI+  KTGY   +G  +V        P V V++G  ++Q R+  A
Sbjct: 279 LKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVVVLLGASSTQARNNDA 338

Query: 281 LELI 284
             L+
Sbjct: 339 TNLL 342


>gi|225419739|ref|ZP_03762042.1| hypothetical protein CLOSTASPAR_06077 [Clostridium asparagiforme
           DSM 15981]
 gi|225041629|gb|EEG51875.1| hypothetical protein CLOSTASPAR_06077 [Clostridium asparagiforme
           DSM 15981]
          Length = 455

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 24/211 (11%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQNPSKLY-LKEKTYFTTEQGIL 133
           YPAS TK+MT  +  +Y      +L  ++ V++ A  T+  + L  +K     T EQ + 
Sbjct: 230 YPASTTKVMTALVAIKYG-----NLADEVTVTEDAVITEAGATLAGIKPGDKLTMEQLLY 284

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  S ND   A    ++GS +KFA +M+ +A+++G   T + N  GL+D N  TTA D
Sbjct: 285 GLMLPSGNDAGAAIAVHMAGSIEKFADMMNEEARRLGATGTHFMNPHGLNDPNHYTTAYD 344

Query: 194 ------QAILGILLRK---------NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNID 238
                 +A+   + RK         N+         + ++  N  +T   K  + +  + 
Sbjct: 345 LYLIFNEALKQPMFRKITGSTAYTANYRGADGKTVSKTWKGGNWFMTGERKTPDGL-TVF 403

Query: 239 GIKTGYTRNSGFNIVTSLRYKDD-PIVAVVM 268
           G KTG T+ +G+ +V + R  +D   ++VVM
Sbjct: 404 GGKTGTTKAAGYCLVMASRDDEDRGYISVVM 434


>gi|313616580|gb|EFR89415.1| D-alanyl-D-alanine carboxypeptidase DacA [Listeria innocua FSL
           S4-378]
          Length = 433

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 108/218 (49%), Gaps = 28/218 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPS--KLYLKEKTYFTTEQGIL 133
           AS+TKMM  Y++ E +   +L  + ++ +S+ A   +Q+ S   + L+    ++ ++   
Sbjct: 53  ASMTKMMDEYLLLEAIDKGQLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYSVQELYE 112

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           A+   SAN  + A  E I+GSEK+F  LM+ KA+++ + +  + N++GL+          
Sbjct: 113 AMAIYSANGAAIAISEKIAGSEKEFVDLMNKKAEELKLGDHQFVNSTGLNNEDLKGGQQV 172

Query: 184 ----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM 234
               D+N++ TAR  A L   L  ++P   K  S  K  +R        ++N N LL  +
Sbjct: 173 GGPTDENKM-TARGMAKLAKHLIDDYPDVLKTASTTKKEFRKGTSDQIDMSNWNWLLPGL 231

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 +DG+KTG T  +G  +  +       +V VV+
Sbjct: 232 IYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRVVTVVL 269


>gi|302388530|ref|YP_003824352.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           saccharolyticum WM1]
 gi|302199158|gb|ADL06729.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           saccharolyticum WM1]
          Length = 519

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 107/242 (44%), Gaps = 24/242 (9%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGI 132
           +PAS+TK+MT  ++ E        L+  +  S  A        S   + E    + +  +
Sbjct: 64  FPASITKVMTALLVIE-----NCSLDETVTFSHNAVYNVESGSSNAGINEGDKLSVKDCL 118

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
            AL+ +SAN+ + A  E ++GS + FA +M+ +AK++G  NT + N SGL++    T+  
Sbjct: 119 YALLLKSANESANALAEHVAGSTEAFADMMNTRAKELGCTNTHFSNPSGLNNPEHYTSPY 178

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH------------NIDGI 240
           D A++      N P + +  S   ++     I      +   H             I G 
Sbjct: 179 DMALIARAAFNN-PVFGEIDSTTYYKLPPNSINKEGLTIYPGHKMMRKSTPYYYPGIVGG 237

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ-ERDQKALE--LITSFLEKKTLKHQQ 297
           KTGYT  +G  +VT        ++ +++   T Q   D K L      +F+  K   H++
Sbjct: 238 KTGYTTLAGNTLVTCAERNGLKLITIILKGSTPQYWSDTKNLLNFGFDNFVSLKAADHEK 297

Query: 298 TH 299
           T+
Sbjct: 298 TY 299


>gi|15674465|ref|NP_268639.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes M1 GAS]
 gi|13621563|gb|AAK33360.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase)
           [Streptococcus pyogenes M1 GAS]
          Length = 410

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 134/303 (44%), Gaps = 26/303 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R I L+   LF +   +S   E     K++ I +D+   ++   K  +   P AS++K
Sbjct: 2   IKRLISLVVIALFFAASTVS-GEEYSVTAKHA-IAVDLESGKVLYEKDAKEVVPVASVSK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ +   KL+ ++ + +S    +       S + L ++ Y T ++ + AL+  
Sbjct: 60  LLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPLDKRKY-TVKELLSALVVN 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           +AN  + A  E I G+E KF   M  + ++ G+ +    N++GL               D
Sbjct: 119 NANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
                 A D AI+   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIFAGQTIYSYNYMLKGMPCYREGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
             GY++ +G + V +       ++ VV+    S E D    +     L+   +  Q+   
Sbjct: 239 FVGYSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQL 298

Query: 301 KDN 303
            +N
Sbjct: 299 IEN 301


>gi|323341544|ref|ZP_08081782.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus ruminis
           ATCC 25644]
 gi|323091028|gb|EFZ33662.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus ruminis
           ATCC 25644]
          Length = 448

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 124/271 (45%), Gaps = 41/271 (15%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI-PVSKTAAT 112
           ++I +D    Q+   K  E   P AS++K+MT+Y++ + +++ KL  N +I P    AA+
Sbjct: 55  AAIAVDAKTGQILYAKNAEQALPVASMSKLMTVYLVLQAIKNGKLSWNQEILP---DAAS 111

Query: 113 QNPSK------LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
           Q  S+      + LK    +T +    A +  SAN  + A    + G+ K F  +M  +A
Sbjct: 112 QKVSQDTQLSNVPLKADHKYTVKALYQATLIYSANGAAMALANAVGGTHKNFIDMMRKEA 171

Query: 167 KKIGMQNTIYKNASGLHDKNQIT--------------TARDQAILGILLRKNFPQYYKYF 212
           +K+G+ +     A+GL +                   +A+D AI+   L +++P+  +  
Sbjct: 172 RKMGINDAEIYTANGLTNDEVFDAKYPGASDNAENKFSAKDMAIISQRLIEDYPEVLETT 231

Query: 213 SIRKFRYRN----RIITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDP 262
            I + ++ N      + N N +L  +        +DG+KTG + ++G     ++      
Sbjct: 232 KITRMKFNNGTDETTMENWNWMLPGLAKAYSELPVDGLKTGTSDSAGACFTGTVNKDGHR 291

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTL 293
           ++ VV+G     + D      ++ F+E + L
Sbjct: 292 LITVVLGAKHDSQED------LSRFVETQKL 316


>gi|324120501|dbj|BAJ78640.1| penicillin binding protein 4 [Staphylococcus epidermidis]
          Length = 411

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 102/225 (45%), Gaps = 23/225 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTA 110
            ++V   N   +  + +D+   PAS TK+MT+ +I+E +   ++ L  ++ +S    K +
Sbjct: 46  GTVVTTTNGQILYKYHKDKKVDPASTTKLMTMLVIYEDINHSEMRLKDKVKISERYQKMS 105

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
              N +   LK+   +T EQ +      S+N  +    E I G   KF   M+ +A+ +G
Sbjct: 106 QLPNLTTFPLKKGQTYTIEQLLKQAALNSSNAATLVLAEHIDGDISKFTDRMNREAQLLG 165

Query: 171 MQNTIYKNASGLHDK--------------NQITTARDQAILGILLRKNFPQYYKYFSIRK 216
           M  T + N SG  +K              +  TTA D AIL   L + +P   K   +  
Sbjct: 166 MNQTHFTNPSGADNKIIKPYEPKKYKDETSSYTTANDMAILTNHLLRKYPNILKMTQLET 225

Query: 217 FRYRNRIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLR 257
               ++ + N N  L      M N+DG+KTG T   G+N+  + +
Sbjct: 226 DTQYHQQLHNTNLSLPHQSLGMKNVDGLKTG-TSKKGYNLALTAK 269


>gi|229101975|ref|ZP_04232689.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
 gi|228681558|gb|EEL35721.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
          Length = 428

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 105/201 (52%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ--GIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S   ++ +   T  +   ++
Sbjct: 73  FPASVTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETVNRNTALM 127

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ KAK++G  ++ +   +GLHD N  TT  D
Sbjct: 128 ILMVLSANDVSYAIAEHIGGSVENFANMMNEKAKQLGATDSHFVTPNGLHDPNHYTTPYD 187

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +      ++I G KTG+T N  
Sbjct: 188 IAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSIYFENPYSIGG-KTGFT-NEA 244

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 245 RNTLVLLNEKDGNRIINVVMA 265


>gi|160945058|ref|ZP_02092284.1| hypothetical protein FAEPRAM212_02576 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442789|gb|EDP19794.1| hypothetical protein FAEPRAM212_02576 [Faecalibacterium prausnitzii
           M21/2]
          Length = 325

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 101/240 (42%), Gaps = 21/240 (8%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----TA 110
           +I++D    ++   K+ DE   PASLTKMMT+ +  E     +  L+ Q+ + +      
Sbjct: 73  AILLDAQSGRVLAQKRADERTAPASLTKMMTVLLAIE----TEPDLDKQVTLPEDIFPAL 128

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            T+  S          T    +   +  S  +   A  + +SGSE+ FA LM+ KA ++G
Sbjct: 129 QTEKASMAGFVPDETVTVRDLLYGAMLPSGAECCEALAQLVSGSEENFAALMNQKAAELG 188

Query: 171 MQNTIYKNASGLHDKNQITTARDQAIL--GILLRKNFPQYYKYFSIRKFRYRNRI--ITN 226
           M+NT + NA+GL D    ++A D A L    L    F   +                ++ 
Sbjct: 189 MKNTHFTNATGLTDTEHYSSAADMAKLLQAALHNTTFRTIFTTKHYTTTATAQHPEGVSL 248

Query: 227 HNKLLNKMHN--------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
            + LL K+          I+G KTGYT  +G  + +         + V +  P     +Q
Sbjct: 249 TSTLLGKLDGTELPTGTQIEGGKTGYTAAAGLCLASLATVNGKEYILVTLAAPGDHGTEQ 308


>gi|291524141|emb|CBK89728.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale DSM 17629]
          Length = 465

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 114/249 (45%), Gaps = 32/249 (12%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
            ++V++VN   +   K   E  YPAS+TK++T Y+    L  K   ++ ++  SK A   
Sbjct: 36  CAVVMEVNTGTVLYEKNSHEKHYPASITKILTTYLTI--LNCK---MDEKVTFSKEAVKE 90

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF----ISGSEKKFAILMSNKA 166
           ++   S +        T EQ +  ++  SAN+ + A  E     + G    F  +M+ +A
Sbjct: 91  SSDGSSSIKRDVGEEMTMEQTLYGVMLESANECAYAAAEHTGKKLGGDYSTFIDMMNKEA 150

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-------RY 219
           K++G  +T + NA+GL D+N  T+A D  ++     +N  ++ K    + +         
Sbjct: 151 KELGCTDTHFNNANGLPDENHWTSAYDMGLISCAAYRN-DEFRKITGTKTYIIPPTNKHT 209

Query: 220 RNRIITNHNKLLNKM--------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
            +  + NH+ +L+          H+  G KTGYT  +   +VT        + AV+M   
Sbjct: 210 EDTPLYNHHAMLHPFKSYSQFVNHDCTGGKTGYTSVANSTLVTYAEKDGLTLCAVIM--- 266

Query: 272 TSQERDQKA 280
            +Q  DQ A
Sbjct: 267 NAQSPDQYA 275


>gi|312622507|ref|YP_004024120.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202974|gb|ADQ46301.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 451

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 116/248 (46%), Gaps = 29/248 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+++ +  Q+   K      +PAS TK++T  +   Y    + +LN    VS  A   
Sbjct: 45  SAILVEAHTGQILFEKNSNLTCFPASTTKVLTALVAISY----EHNLNKIFKVSSKATMI 100

Query: 114 NP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            P  S  YL      + +  + A++  SAND +    E I+G+   F   M+  AK IG 
Sbjct: 101 EPGSSSYYLNPGETISFQDLLYAMLLISANDAANVIAENIAGNIPAFVEKMNQYAKSIGA 160

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ--YYKYFSIRKFRYRN-------- 221
           +N+ + N +GLH     TTA D   L ++ R+ +      K FS  ++R           
Sbjct: 161 ENSHFVNPNGLHSPQHYTTAYD---LSLIARQAYQNEILRKIFSTVEYRITTASMHKKPE 217

Query: 222 -RIITNHNKLLNKMHN-----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
            +II N NKLL K          GIKTGYT  +   ++ S +  +  ++AV++   +S++
Sbjct: 218 WQIIYNINKLLRKNSKYYYPYATGIKTGYTAQAKRCLIASAKKDNIELIAVIL---SSED 274

Query: 276 RDQKALEL 283
               A++L
Sbjct: 275 AFSDAIKL 282


>gi|293367840|ref|ZP_06614486.1| penicillin-binding protein 4 [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291318031|gb|EFE58431.1| penicillin-binding protein 4 [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 422

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 24/225 (10%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS--- 107
           +PK  +I  D N   +  +  +    PAS+TK+MTLY+ F+ L + K+  + +I ++   
Sbjct: 50  EPKAMTIT-DENGQVLYDYHGETSSDPASITKLMTLYLTFDALNNGKISKDQKIKITSDY 108

Query: 108 -KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
            K +A  N S + LK+   +T ++ +  +   S+N  +   GE I GS  KF   M+ KA
Sbjct: 109 EKMSALPNLSTVKLKKGQTYTIDEIMKQVSLASSNPATLILGEKIDGSTSKFTDRMNEKA 168

Query: 167 KKIGMQNTIYKNASGLHD-----------KNQI---TTARDQAILGILLRKNFPQYYKYF 212
           K++GM +T + N SG  +           K++    TT++D ++L   L K  P+   Y 
Sbjct: 169 KELGMNHTHFTNPSGASNDLLKPYEPKKYKDEAKTKTTSQDISLLIHSLLKKHPEVINYT 228

Query: 213 SIRKFRYRNRIITNHNKLL----NKMHNIDGIKTGYTRNSGFNIV 253
            +   +  N+     N  L     +    DG+KTG T + G++I 
Sbjct: 229 KLTHGKQYNQDFETTNLSLKGEPEEYLGTDGLKTG-TSDEGYSIA 272


>gi|229014554|ref|ZP_04171670.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
 gi|228746706|gb|EEL96593.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
          Length = 425

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 117/245 (47%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 55  DELLAIASMSKLIVIYAVLEAIKEGKITWDTKVTISDYAYEVSRNNEFSNVPFEKGRQYT 114

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 115 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 174

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD  IL  ++   +P+        K R+RN    NH K + +
Sbjct: 175 KGKHPEGTDPNGENSMSARDMGILSKIIITKYPE---MLEDTKQRFRN-FPDNHPKPI-R 229

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 230 MENWNWMLPGAAFSYEGADGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMDERFTE 289

Query: 280 ALELI 284
           +  LI
Sbjct: 290 SRALI 294


>gi|71902909|ref|YP_279712.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS6180]
 gi|71802004|gb|AAX71357.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS6180]
          Length = 410

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 126/277 (45%), Gaps = 26/277 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R I L+   LF +   +S   E     K++ I +D+   ++   K  +   P AS++K
Sbjct: 2   IKRLISLVVIALFFAASTVS-GEEYSVTAKHA-IAVDLESGKVLYEKDTKEVVPVASVSK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ +   KL+ ++ + +S    +       S + L ++ Y T ++ + AL+  
Sbjct: 60  LLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPLDKRKY-TVKELLSALVVN 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           +AN  + A  E I G+E KF   M  + ++ G+ +    N++GL               D
Sbjct: 119 NANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
                 A D AI+   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIFDGQTIYSYNYMLKGMPCYREGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
             GY++ +G + V +       ++ VV+    S E D
Sbjct: 239 FVGYSKKAGASFVATSVENQMRVITVVLNADQSHEDD 275


>gi|262370174|ref|ZP_06063501.1| D-alanyl-D-alanine endopeptidase [Acinetobacter johnsonii SH046]
 gi|262315213|gb|EEY96253.1| D-alanyl-D-alanine endopeptidase [Acinetobacter johnsonii SH046]
          Length = 351

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 110/245 (44%), Gaps = 27/245 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT---A 110
           +++V+D N  ++   K      P AS+TK+MT  +I +     +L+++  I + +     
Sbjct: 109 AALVMDGNTGEVLYSKNSNTALPIASITKLMTAVVISD----ARLNMSENITLQQADFSC 164

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           +    S   L+        + +L  + +S N  ++A      G    F   M+ KAK +G
Sbjct: 165 SGCKSSSSSLRAGDSMNRAEALLFALMKSENPAASALARTYPGGRSAFVSAMNAKAKSLG 224

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR----------YR 220
           M +T Y  ++GLH  N I +ARD   LGIL+        +Y  IR+F           YR
Sbjct: 225 MNSTHYMESTGLHPGN-IASARD---LGILVNA----ASQYGLIRQFSTTASYDFNLGYR 276

Query: 221 NRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
                N N L+ N   NI+  KTG+   +G  +V      + P V V++G  +S  R   
Sbjct: 277 VLKSNNTNALVRNGGWNINISKTGFINEAGRCVVMHTTLNNRPAVVVLLGADSSAARTND 336

Query: 280 ALELI 284
           A  L+
Sbjct: 337 ATRLM 341


>gi|229029046|ref|ZP_04185145.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
 gi|228732326|gb|EEL83209.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
          Length = 407

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 103/201 (51%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 52  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 106

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GLHD N  TT  D
Sbjct: 107 ILMVLSANDVSYAIAERIGGSVENFAHMMNERAKQLGATDSHFVTPNGLHDPNHYTTPFD 166

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +      ++I G KTG+T N  
Sbjct: 167 MAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPYSIGG-KTGFT-NEA 223

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 224 RNTLVLLNEKDGNRIINVVMA 244


>gi|19745420|ref|NP_606556.1| penicillin-binding protein [Streptococcus pyogenes MGAS8232]
 gi|139473105|ref|YP_001127820.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes str.
           Manfredo]
 gi|19747531|gb|AAL97055.1| putative penicillin-binding protein [Streptococcus pyogenes
           MGAS8232]
 gi|134271351|emb|CAM29569.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
           pyogenes str. Manfredo]
          Length = 410

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 126/277 (45%), Gaps = 26/277 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R I L+   LF +   +S   E     K++ I +D+   ++   K  +   P AS++K
Sbjct: 2   IKRLISLVVIALFFAASTVS-GEEYSVTAKHA-IAVDLESGKVLYEKDAKEVVPVASVSK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ +   KL+ ++ + +S    +       S + L ++ Y T ++ + AL+  
Sbjct: 60  LLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPLDKRKY-TVKELLSALVVN 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           +AN  + A  E I G+E KF   M  + ++ G+ +    N++GL               D
Sbjct: 119 NANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
                 A D AI+   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIFDGQTIYSYNYMLKGMPCYREGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
             GY++ +G + V +       ++ VV+    S E D
Sbjct: 239 FVGYSKKAGASFVATSVENQMRVITVVLNADQSHEDD 275


>gi|228932656|ref|ZP_04095531.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827028|gb|EEM72787.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 407

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 103/201 (51%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q  +S+ A  Q  S  ++  +          ++
Sbjct: 52  FPASMTKVLTAILLMEHTKPED-----QFTLSQLALDQEKSNYQIEFQPGETINRNTALM 106

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GLHD N  TT  D
Sbjct: 107 ILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYD 166

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +       +I G KTG+T N  
Sbjct: 167 MAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPFSIGG-KTGFT-NEA 223

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 224 RNTLVLLNEKDGNRIINVVMA 244


>gi|71910062|ref|YP_281612.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS5005]
 gi|71852844|gb|AAZ50867.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS5005]
          Length = 410

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 134/303 (44%), Gaps = 26/303 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R I L+   LF +   +S   E     K++ I +D+   ++   K  +   P AS++K
Sbjct: 2   IKRLISLVVIALFFAASTVS-GEEYSVTAKHA-IAVDLESGKVLYEKDAKEVVPVASVSK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ +   KL+ ++ + +S    +       S + L ++ Y T ++ + AL+  
Sbjct: 60  LLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPLDKRKY-TVKELLSALVVN 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           +AN  + A  E I G+E KF   M  + ++ G+ +    N++GL               D
Sbjct: 119 NANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
                 A D AI+   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIFAGQTIYSYNYMLKGMPCYREGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
             GY++ +G + V +       ++ VV+    S E D    +     L+   +  Q+   
Sbjct: 239 FVGYSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQL 298

Query: 301 KDN 303
            +N
Sbjct: 299 IEN 301


>gi|16801957|ref|NP_472225.1| hypothetical protein lin2897 [Listeria innocua Clip11262]
 gi|16415432|emb|CAC98123.1| lin2897 [Listeria innocua Clip11262]
          Length = 445

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 108/218 (49%), Gaps = 28/218 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPS--KLYLKEKTYFTTEQGIL 133
           AS+TKMM  Y++ E +   +L  + ++ +S+ A   +Q+ S   + L+    ++ ++   
Sbjct: 65  ASMTKMMDEYLLLEAIDKGQLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYSVQELYE 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           A+   SAN  + A  E I+GSEK+F  LM+ KA+++ + +  + N++GL+          
Sbjct: 125 AMAIYSANGAAIAISEKIAGSEKEFVDLMNKKAEELKLGDHQFVNSTGLNNEDLKGGQQV 184

Query: 184 ----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM 234
               D+N++ TAR  A L   L  ++P   K  S  K  +R        ++N N LL  +
Sbjct: 185 GGPTDENKM-TARGMAKLAKHLIDDYPDVLKTASTTKKEFRKGTSDQIDMSNWNWLLPGL 243

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 +DG+KTG T  +G  +  +       +V VV+
Sbjct: 244 IYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRVVTVVL 281


>gi|139473812|ref|YP_001128528.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes str.
           Manfredo]
 gi|134272059|emb|CAM30298.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
           pyogenes str. Manfredo]
          Length = 411

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 123/252 (48%), Gaps = 33/252 (13%)

Query: 34  ILFLSIIMIS------MASELHAKPKYSSIVIDVNKNQMTGFKQDE--PRYPASLTKMMT 85
           ILF  ++  S      +A++     +++ IV++ +  ++  +++D   P   ASLTK++T
Sbjct: 7   ILFFVVLTCSGLSKIVLAADFQVGAEHA-IVVEADSGRVL-YEKDAKTPDAIASLTKLVT 64

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
            Y++ + ++S +L L+ Q+ +S  A      ++ S +   +KTY + +  + A +  S+N
Sbjct: 65  AYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDKKTY-SVQDLLTATLVASSN 123

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQ 187
             + A  E ++GSE  F   M  +    G+ +    NASGL               ++  
Sbjct: 124 SAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKDNRYPGSALEEEN 183

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTG 243
             +A+D A++ + L ++FP+  +     +  +    I + N+LL  M      +DG+KTG
Sbjct: 184 TLSAQDVAVVTMHLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMAKGRAGVDGLKTG 243

Query: 244 YTRNSGFNIVTS 255
            T  +G  +V +
Sbjct: 244 TTDLAGHCLVVT 255


>gi|295105683|emb|CBL03227.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 290

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 101/240 (42%), Gaps = 21/240 (8%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----TA 110
           +I++D    ++   K+ DE   PASLTKMMT+ +  E     +  L+ Q+ + +      
Sbjct: 38  AILLDAQSGRVLAQKRADERTAPASLTKMMTVLLAIE----TEPDLDKQVTLPEDIFPAL 93

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            T+  S          T    +   +  S  +   A  + +SGSE+ FA LM+ KA ++G
Sbjct: 94  QTEKASMAGFVPDETVTVRDLLYGAMLPSGAECCEALAQLVSGSEENFAALMNQKAAELG 153

Query: 171 MQNTIYKNASGLHDKNQITTARDQAIL--GILLRKNFPQYYKYFSIRKFRYRNRI--ITN 226
           M+NT + NA+GL D    ++A D A L    L    F   +                ++ 
Sbjct: 154 MKNTHFTNATGLTDTEHYSSAADMAKLLQAALHNTTFRTIFTTEHYTTTATAQHPEGVSL 213

Query: 227 HNKLLNKMHN--------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
            + LL K+          I+G KTGYT  +G  + +         + V +  P     +Q
Sbjct: 214 TSTLLGKLDGTELPTGTRIEGGKTGYTAAAGLCLASLATVNGKEYILVTLAAPGDHGTEQ 273


>gi|225403123|ref|ZP_03760420.1| hypothetical protein CLOSTASPAR_04451 [Clostridium asparagiforme
           DSM 15981]
 gi|225043241|gb|EEG53487.1| hypothetical protein CLOSTASPAR_04451 [Clostridium asparagiforme
           DSM 15981]
          Length = 492

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 105/215 (48%), Gaps = 27/215 (12%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTE 129
           P  PAS+TK++T  ++ E   SK   L+  +  S++A     + + +KL+++     + E
Sbjct: 61  PFAPASITKLLTALVVIE--NSK---LDDMVTFSQSAVYDVESGSGNKLHMETGDELSVE 115

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
             +  L+  S+N  + A  E ++GS + F  +M+++ K+IG   + + N SGL+D NQ  
Sbjct: 116 DCLYMLLLLSSNQAANALAEHVAGSREAFVEMMNDRIKEIGCTESHFANPSGLNDDNQYV 175

Query: 190 TARDQAILG-------ILLRKNFPQYYKYFSI------RKFRYRNRIITNHNKLLNKMHN 236
           +A D A++         LL+ +  + Y   +         F   +R+I   +   +  + 
Sbjct: 176 SAYDMALIAREAFNNETLLKIDSSKSYSIGATANNPNGASFNMEHRLIMAEDT--SSQYY 233

Query: 237 IDGI---KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            +G    KTGYT  +G  +VT        ++AVV+
Sbjct: 234 CEGTMAGKTGYTSIAGNTLVTLTERDGRRLIAVVL 268


>gi|229105975|ref|ZP_04236597.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
 gi|228677459|gb|EEL31714.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
          Length = 423

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 126/259 (48%), Gaps = 42/259 (16%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
            ++   +++  SAN  S A  E ++GSEK F  L ++ AKK+G++   + NA+GL++ + 
Sbjct: 113 VKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANDHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD  IL  ++   +P+        K R+RN    NH + + +
Sbjct: 173 KGKHPEGTDPNGENSMSARDMGILSKIIITKYPE---MLEDTKQRFRN-FPDNHPRPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGSDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMDERFTE 287

Query: 280 ALELI----TSFLEKKTLK 294
           +  LI     SF EK+ LK
Sbjct: 288 SRALIEYGFNSF-EKQKLK 305


>gi|317132474|ref|YP_004091788.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ethanoligenens
           harbinense YUAN-3]
 gi|315470453|gb|ADU27057.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ethanoligenens
           harbinense YUAN-3]
          Length = 371

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 16/205 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQNPSKLYLKEKTYFTTEQGILA 134
           YPAS+TK++T  +  E      +     +P   T A   + + + L      T EQ    
Sbjct: 74  YPASITKILTALVSVENGDPSDV---ITVPQDVTQAQGSSVANIALVPGDTITMEQLEYT 130

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +   SAND + A  + I GS   F  +M+ KA  +G +++ +   +GL D N  T+A D 
Sbjct: 131 MFLASANDSAIAIADHIGGSVSGFVDMMNQKATALGAKDSHFSTPNGLPDPNNYTSAYDM 190

Query: 195 AILGILLRKNFPQYYKYFSIRKF-------RYRNRIITNHNKLLNKM----HNIDGIKTG 243
           A++     +N P   +YFS R F       R   +  T  +K++ K      +++  KTG
Sbjct: 191 ALITRAAAQN-PTLMRYFSARSFTLPVSALRKGAQSFTTLHKMMKKTAYYDADVEAGKTG 249

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVM 268
           +   SG  +VT  +     ++AVV+
Sbjct: 250 WETMSGNTLVTVAQKNGRTLIAVVL 274


>gi|163814077|ref|ZP_02205469.1| hypothetical protein COPEUT_00230 [Coprococcus eutactus ATCC 27759]
 gi|158450526|gb|EDP27521.1| hypothetical protein COPEUT_00230 [Coprococcus eutactus ATCC 27759]
          Length = 331

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY--LKEKTYFTTEQGIL 133
           YPAS+TK+MT  ++ E ++  ++ L+  + +++     +   +   L        +  + 
Sbjct: 101 YPASMTKIMTGLLVIESIEKGEISLDDMVTLNRKVTFDDWDAMASDLVGGCRINVKNLLY 160

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  S ND      E I+GSE  F  +M+ KA++IG  NT ++N  GLH  +  TTA D
Sbjct: 161 GLMITSYNDCGVILAELIAGSESAFCDMMNEKAQEIGATNTHFENCHGLHSDDHYTTAYD 220


>gi|260899160|ref|ZP_05907555.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus AQ4037]
 gi|308110607|gb|EFO48147.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus AQ4037]
          Length = 181

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 7/159 (4%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
           F S +++  A ++ AK     +++D +  ++   K+   +  PASLTKMMT Y+I + L 
Sbjct: 26  FASPVVVPDAPQIAAK---GYVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELA 82

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              +  +  + +SK A  +N    SK++++  T          +I +S ND   A  E I
Sbjct: 83  RGNISEDDDVTISKNAWAKNFPDSSKMFIEVGTTVKVRDLNRGIIIQSGNDACVAMAEHI 142

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
           +GSE  F  LM+  A  +GM+N+ + N  GL +    +T
Sbjct: 143 AGSEDAFVDLMNAWANTLGMKNSHFANVHGLDNSELYST 181


>gi|94994364|ref|YP_602462.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS10750]
 gi|94547872|gb|ABF37918.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS10750]
          Length = 451

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 123/252 (48%), Gaps = 33/252 (13%)

Query: 34  ILFLSIIMIS------MASELHAKPKYSSIVIDVNKNQMTGFKQDE--PRYPASLTKMMT 85
           ILF  ++  S      +A++     +++ IV++ +  ++  +++D   P   ASLTK++T
Sbjct: 47  ILFFMVLTCSGFGKTVLAADFQVGAEHA-IVVEADSGRVL-YEKDAKTPDAIASLTKLVT 104

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
            Y++ + ++S +L L+ Q+ +S  A      ++ S +   +KTY + +  + A +  S+N
Sbjct: 105 AYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDKKTY-SVQDLLTATLVASSN 163

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQ 187
             + A  E ++GSE  F   M  +    G+ +    NASGL               ++  
Sbjct: 164 SAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKDNRYPGSALEEEN 223

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTG 243
             +A+D A++ + L ++FP+  +     +  +    I + N+LL  M      +DG+KTG
Sbjct: 224 TLSAQDVAVVTMHLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMAKGRAGVDGLKTG 283

Query: 244 YTRNSGFNIVTS 255
            T  +G  +V +
Sbjct: 284 TTDLAGHCLVVT 295


>gi|50913625|ref|YP_059597.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS10394]
 gi|50902699|gb|AAT86414.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS10394]
          Length = 410

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 134/303 (44%), Gaps = 26/303 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R I L+   LF +   +S   E     K++ I +D+   ++   K  +   P AS++K
Sbjct: 2   IKRLISLVVIALFFAASTVS-GEEYSVTAKHA-IAVDLESGKVLYEKDAKEVVPVASVSK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ +   KL+ ++ + +S    +       S + L ++ Y T ++ + AL+  
Sbjct: 60  LLTTYMVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPLDKRKY-TVKELLSALVVN 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           +AN  + A  E I G+E KF   M  + ++ G+ +    N++GL               D
Sbjct: 119 NANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
                 A D AI+   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIFDGQTIYSYNYMLKGMPCYREGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
             GY++ +G + V +       ++ VV+    S E D    +     L+   +  Q+   
Sbjct: 239 FVGYSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQL 298

Query: 301 KDN 303
            +N
Sbjct: 299 IEN 301


>gi|306827400|ref|ZP_07460687.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pyogenes
           ATCC 10782]
 gi|304430547|gb|EFM33569.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pyogenes
           ATCC 10782]
          Length = 442

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 123/252 (48%), Gaps = 33/252 (13%)

Query: 34  ILFLSIIMIS------MASELHAKPKYSSIVIDVNKNQMTGFKQDE--PRYPASLTKMMT 85
           ILF  ++  S      +A++     +++ IV++ +  ++  +++D   P   ASLTK++T
Sbjct: 38  ILFFMVLTCSGFGKTVLAADFQVGAEHA-IVVEADSGRVL-YEKDAKTPDAIASLTKLVT 95

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
            Y++ + ++S +L L+ Q+ +S  A      ++ S +   +KTY + +  + A +  S+N
Sbjct: 96  AYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDKKTY-SVQDLLTATLVASSN 154

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQ 187
             + A  E ++GSE  F   M  +    G+ +    NASGL               ++  
Sbjct: 155 SAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKDNRYPGSALEEEN 214

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTG 243
             +A+D A++ + L ++FP+  +     +  +    I + N+LL  M      +DG+KTG
Sbjct: 215 TLSAQDVAVVTMHLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMAKGRAGVDGLKTG 274

Query: 244 YTRNSGFNIVTS 255
            T  +G  +V +
Sbjct: 275 TTDLAGHCLVVT 286


>gi|229170094|ref|ZP_04297784.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
 gi|228613378|gb|EEK70513.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
          Length = 425

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 118/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 55  DELLAIASMSKLIVIYAVLEAIKEGKITWDTKVTISDYAYEVSRNNEFSNVPFEKGRQYT 114

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 115 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 174

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 175 KGKHPEGTDPNGENSMSARD---MGILSKTIITKYPEMLEDTKQRFRN-FPDNHPKPI-R 229

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 230 MENWNWMLPGAAFSYEGADGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMDERFTE 289

Query: 280 ALELI 284
           +  LI
Sbjct: 290 SRALI 294


>gi|291548692|emb|CBL24954.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus torques L2-14]
          Length = 478

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 106/235 (45%), Gaps = 28/235 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S+IV+D+N   +   KQ E + YPAS+TK++T  +  +        L   +  S+ + + 
Sbjct: 79  SAIVMDMNSGAVLYSKQIEKKHYPASITKLLTTLVALD-----NAELTDTVEFSQDSISF 133

Query: 113 --QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS----GSEKKFAILMSNKA 166
                + + +      + E  + A++  SAN+VS A  E +     G    F   M++++
Sbjct: 134 LEYGDAHIGMTPGEQISMEDALYAVLLASANEVSYAVAESVGKKMGGGYDTFIQAMNDES 193

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGIL-------------LRKNFPQYYKYFS 213
           +K+G   + + NA+GLHD+   TTA D A +G               L    P       
Sbjct: 194 EKLGCTGSHWTNANGLHDEQHYTTAHDMARIGAAVYQKEAFRTISQSLSHTIPVTNLVNE 253

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            R F+ +++++   N   N      G KTGYT  +   +VT     D  +VAVV+
Sbjct: 254 ERTFQQKHKMLWPQND--NYYEYCKGGKTGYTDQARTTLVTMADNGDMQLVAVVL 306


>gi|229829484|ref|ZP_04455553.1| hypothetical protein GCWU000342_01574 [Shuttleworthia satelles DSM
           14600]
 gi|229791915|gb|EEP28029.1| hypothetical protein GCWU000342_01574 [Shuttleworthia satelles DSM
           14600]
          Length = 508

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 108/242 (44%), Gaps = 40/242 (16%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-- 111
           S++++D++  ++   K+D+  RYPAS TK+MT  +  E+ +     L+  +  S  A   
Sbjct: 56  SAVLMDLDSGEILYGKEDQTARYPASTTKLMTALLALEHSK-----LDETVTFSSDAVFK 110

Query: 112 -TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS----GSEKKFAILMSNKA 166
              N S +        + EQ +  ++  SAN+ + A  E +     G    F   M+++A
Sbjct: 111 NETNSSHIARDVGEQMSMEQTLYGVLLASANECAYAIAEHVGADMGGDYNTFIQAMNDRA 170

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF----RYRNR 222
           K++G  NT + N+SGLHD    T A D   L ++ R    + Y+  ++RK     RY   
Sbjct: 171 KELGCVNTHFVNSSGLHDDQHYTCAYD---LALIAR----EAYQNETLRKMVGTRRYEIP 223

Query: 223 IITNHNK--LLNKMH--------------NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
               H +   LN  H                 G KTGYT  +  ++VT +      +V V
Sbjct: 224 PTNKHAEPTPLNNTHAMLSANKTSKFLYDGCQGGKTGYTDEARHSLVTYVERDGRKLVCV 283

Query: 267 VM 268
            M
Sbjct: 284 SM 285


>gi|296332949|ref|ZP_06875407.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305672708|ref|YP_003864379.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296149913|gb|EFG90804.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305410951|gb|ADM36069.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 443

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 130/279 (46%), Gaps = 43/279 (15%)

Query: 33  KILFLSIIMISMASELHA---KPKYSSIVIDVNKNQMTGF----------KQDEPRYP-A 78
           K L +S++++++A    A   K K +S  ID+N +               K  + R P A
Sbjct: 7   KQLLMSLVVLTLAVTCLAPMSKAKAASDPIDINASAAIMIEASSGKILYSKNADKRLPIA 66

Query: 79  SLTKMMTLYIIFEYLQSKKLHLN-TQIP---VSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           S+TKMMT Y++ E +   K+  + T  P   V + +   + S + L++   +T ++   A
Sbjct: 67  SMTKMMTEYLLLEAIDQGKVKWDQTYTPDDYVYEISQDNSLSNVPLRKDGKYTVKELYQA 126

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------- 183
               SAN  + A  E ++GSE KF   M+ KAK++G+ +  + NA+GL            
Sbjct: 127 TAIYSANAAAIAIAEVVAGSETKFVEKMNAKAKELGLTDYKFVNATGLENKDLHGHQPEG 186

Query: 184 ---DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLN--- 232
              D+    +A+D AIL   L  ++P+  +  SI K ++R        + N N +L    
Sbjct: 187 TSVDEESEVSAKDMAILADHLITDYPEILETSSIAKTKFREGTDDEMDMPNWNFMLKGLV 246

Query: 233 ---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              K   +DG+KTG T ++G     +       ++ VV+
Sbjct: 247 SEYKKATVDGLKTGSTDSAGSCFTGTAELNGMRVITVVL 285


>gi|163943071|ref|YP_001647955.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
 gi|163865268|gb|ABY46327.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
          Length = 423

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 118/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVIYAVLEAIKEGKITWDTKVTISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNGENSMSARD---MGILSKTIITKYPEMLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFSYEGADGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           +  LI
Sbjct: 288 SRALI 292


>gi|331091125|ref|ZP_08339967.1| hypothetical protein HMPREF9477_00610 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405347|gb|EGG84883.1| hypothetical protein HMPREF9477_00610 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 321

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 65/120 (54%), Gaps = 7/120 (5%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP--SKLYLKEKTYFTTEQGIL 133
           YPAS TK++T  +  +Y      +L+  + VSKTA    P  S   +KE    T  + + 
Sbjct: 96  YPASTTKILTALVALKYG-----NLDDVVTVSKTATEFPPAASLCGIKEGDKLTLRELLY 150

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  S ND + A  E ISGS ++FA LM+ +A  IG  +T + N  GLHD N  TTA D
Sbjct: 151 GLLLPSGNDAAVAIAEHISGSVEEFAKLMNKEAYSIGATHTHFVNPHGLHDDNHYTTAYD 210


>gi|262376983|ref|ZP_06070209.1| D-alanyl-D-alanine endopeptidase [Acinetobacter lwoffii SH145]
 gi|262308021|gb|EEY89158.1| D-alanyl-D-alanine endopeptidase [Acinetobacter lwoffii SH145]
          Length = 353

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 113/246 (45%), Gaps = 27/246 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT---A 110
           +++V+D    ++   K     YP AS+TK+MT  +I +     +L+++ +I + +     
Sbjct: 111 AALVMDAQTGEVLFSKNTNTAYPIASITKLMTAVVISD----ARLNMSEKITLQQADFSC 166

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           +    S   L+        + +L  + +S N  + A      G    F   M+ KAK++G
Sbjct: 167 SGCKSSSSTLRAGDSMNRAEALLFALMKSENPAAAALARTYPGGRSAFIAKMNAKAKELG 226

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR----------YR 220
           M +T +  ++GLH  N + +ARD   LGIL+        +Y  IR+F           YR
Sbjct: 227 MNSTRFMESTGLHPGN-MASARD---LGILVNT----ASQYGLIRQFSTTPSYDFNLGYR 278

Query: 221 NRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
                N N L+ N   NI+  KTG+   +G  +V      + P+  V++G  +SQ R   
Sbjct: 279 VLKSNNTNALVRNGGWNINISKTGFINEAGRCVVMHTTLNNRPVAVVLLGANSSQARTND 338

Query: 280 ALELIT 285
           A  L++
Sbjct: 339 ATRLMS 344


>gi|268680339|ref|YP_003304770.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268618370|gb|ACZ12735.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 309

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 13/199 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT  +  E  +     +N  + +++      P+K  L+    F     + A +
Sbjct: 61  PASLTKIMTAMLAIESGR-----MNDVVTITRDMIQVEPTKAGLRIGEKFYLRDLVKAAM 115

Query: 137 TRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
             SAND + + G ++  G+   F   M+ KAK++GM NT + N  G    +  +TA D  
Sbjct: 116 VMSANDAAMSIGVYLGDGNVNTFVAKMNRKAKQLGMNNTNFTNPCGFDIGDHHSTALDLL 175

Query: 196 ILGILLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
            +     KN  Q+ +   +++  +      R      HNKLLN      GIKTGYTR +G
Sbjct: 176 KMSEYAIKN-SQFNEMAKLKRHDFKSLNTKRAYAAYTHNKLLNNYKYAVGIKTGYTRKAG 234

Query: 250 FNIVTSLRYKDDPIVAVVM 268
             ++   +  +  ++ V++
Sbjct: 235 PCLIARAKNGNKDVLVVML 253


>gi|182419858|ref|ZP_02951098.1| D-alanyl-D-alanine carboxypeptidase [Clostridium butyricum 5521]
 gi|237666495|ref|ZP_04526480.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376406|gb|EDT73988.1| D-alanyl-D-alanine carboxypeptidase [Clostridium butyricum 5521]
 gi|237657694|gb|EEP55249.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 413

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 104/224 (46%), Gaps = 24/224 (10%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPAS 79
           ++R  + +  +L    I +++ +E  AKP+ ++    +ID +    + G  +D    PAS
Sbjct: 1   MKRYFKFLSMLLLFLCIPLTVHAET-AKPEINAQGCALIDASSGTILYGKNEDCTFEPAS 59

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
            TK+MT  +  +     K  L  ++ + +   + + + + L +    T    +L L+  S
Sbjct: 60  TTKVMTALVALD-----KCKLTDEVTIQENFTSVDGTAIGLLKGDVVTVHDLLLGLLMES 114

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND +      +SGS   FA LM+ KAK++G   T ++N SGL D   +TT  D   L +
Sbjct: 115 GNDCANELAYHVSGSIDSFAQLMNEKAKELGATATSFRNPSGLPDPEHLTTPHD---LAL 171

Query: 200 LLRKNFPQYYKYFSIRKFRY----------RNRIITNHNKLLNK 233
            LR+   +   +  I +  Y          R  II N N ++NK
Sbjct: 172 FLREAI-KNQDFLDIAQTPYATITMINNPERTIIINNKNYMINK 214


>gi|291550390|emb|CBL26652.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus torques L2-14]
          Length = 343

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 3/126 (2%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G+K  +  YPAS TK+MT Y+ F+Y     +     +  S ++   +     L+     T
Sbjct: 106 GYKLYDKLYPASTTKLMTAYLAFKYGNMDDI---VTVSDSVSSFASDEVVCNLQPGDTVT 162

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
               +  L+ RS ND   A  E ISGS + FA LM+++AK +G   + + N  GLH++N 
Sbjct: 163 LYDLLCGLLLRSGNDCGVAIAEHISGSVEAFAELMNSEAKALGATGSHFVNPHGLHNENH 222

Query: 188 ITTARD 193
            TTA D
Sbjct: 223 YTTAYD 228


>gi|225572130|ref|ZP_03780994.1| hypothetical protein RUMHYD_00424 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040396|gb|EEG50642.1| hypothetical protein RUMHYD_00424 [Blautia hydrogenotrophica DSM
           10507]
          Length = 370

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           E  YPAS+TK+MT  + F   QS KL     I                      T +Q +
Sbjct: 142 EKVYPASITKLMTAMLAF---QSGKLDSTVTIQQEDLDLESGSQVCGFMVGDQVTLDQLV 198

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             L+  S ND ++A   ++ GS++KF  +M++ A K+GM  T ++N  GLH +N  TT  
Sbjct: 199 RCLLVYSGNDAASAIARYVGGSQEKFVAMMNDYAAKLGMTGTHFENPHGLHTENHYTTVY 258

Query: 193 D 193
           D
Sbjct: 259 D 259


>gi|126640330|ref|YP_001083314.1| D-alanyl-D-alanine endopeptidase penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter baumannii
           ATCC 17978]
          Length = 255

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 114/253 (45%), Gaps = 28/253 (11%)

Query: 49  HAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYL--QSKKLHLNT 102
           +A+P  S+   +V+D    ++   K      P AS+TK+MT  +  +     S+++ L  
Sbjct: 4   NAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKLMTAVVTADARLNMSEEITLE- 62

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           QI  +      + S L + +K      + +L  + +S N  + A      G    F   M
Sbjct: 63  QIDFAGAGGKNSSSTLRVGDK--MNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAAM 120

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR---- 218
           + KA+ +GM  T Y  ++GL  +N +++ARD   LGIL         +Y  IR+F     
Sbjct: 121 NAKARALGMNATHYYESTGLDPRN-VSSARD---LGILAST----ASQYGLIRQFSTTPT 172

Query: 219 ------YRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
                 YR     N N L+ N   NI+  KTGY   +G  +V        P V V++G P
Sbjct: 173 YDFNLGYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEP 232

Query: 272 TSQERDQKALELI 284
           ++Q R+  A  L+
Sbjct: 233 STQARNNDATNLL 245


>gi|71903459|ref|YP_280262.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS6180]
 gi|71802554|gb|AAX71907.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS6180]
          Length = 451

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 123/252 (48%), Gaps = 33/252 (13%)

Query: 34  ILFLSIIMIS------MASELHAKPKYSSIVIDVNKNQMTGFKQDE--PRYPASLTKMMT 85
           ILF  ++  S      +A++     +++ IV++ +  ++  +++D   P   ASLTK++T
Sbjct: 47  ILFFMVLTCSGFGKTVLAADFQVGAEHA-IVVEADSGRVL-YEKDAKTPDAIASLTKLVT 104

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
            Y++ + ++S +L L+ Q+ +S  A      ++ S +   +KTY + +  + A +  S+N
Sbjct: 105 AYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDKKTY-SVQDLLTATLVASSN 163

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQ 187
             + A  E ++GSE  F   M  +    G+ +    NASGL               ++  
Sbjct: 164 SAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKDNRYPGSALEEEN 223

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTG 243
             +A+D A++ + L ++FP+  +     +  +    I + N+LL  M      +DG+KTG
Sbjct: 224 TLSAQDVAVVTMHLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMAKGRAGVDGLKTG 283

Query: 244 YTRNSGFNIVTS 255
            T  +G  +V +
Sbjct: 284 TTDLAGHCLVVT 295


>gi|49185390|ref|YP_028642.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Sterne]
 gi|49179317|gb|AAT54693.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Sterne]
          Length = 272

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 104/199 (52%), Gaps = 16/199 (8%)

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           MT YI+ E L    + L+  + +S     A  +P ++  K+KT  T    + AL+    N
Sbjct: 1   MTEYIVLEQLDKGNIQLDEVVKISNEVFRAETSPIQVTSKDKT--TVRDLLHALLLTGNN 58

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGM-QNTIYKNASGLH---DKNQITTARDQAIL 197
             + A  E I+G+E  F  LM+ KAK++ + Q + + NA+G++   +K   TTA +   L
Sbjct: 59  RSTLALAEHIAGNEDNFTQLMNEKAKQLKLSQPSPFLNATGMNNGTNKLSTTTAIEVGKL 118

Query: 198 GILLRKNFPQYYKYFSIR--KFRYRNRIITNHNKL---LN---KMHNIDGIKTGYTRNSG 249
              L  +FP       +   +F +++  + N NK+   LN   K+  +DG++T ++ NS 
Sbjct: 119 ATRLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKLQGVDGLQTSFSTNSN 178

Query: 250 FNIVTSLRYKDDPIVAVVM 268
           ++ V++ +  D  +++V++
Sbjct: 179 YSFVSTAKRGDTRLISVIL 197


>gi|56807642|ref|ZP_00365536.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Streptococcus
           pyogenes M49 591]
          Length = 410

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 134/303 (44%), Gaps = 26/303 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R I L+   LF +   +S   E     K++ I +D+   ++   K  +   P AS++K
Sbjct: 2   IKRLISLVVIALFFAASTVS-GEEYSVTAKHA-IAVDLESGKVLYEKDAKEVVPVASVSK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ +   KL+ ++ + +S    +       S + L ++ Y T ++ + AL+  
Sbjct: 60  LLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPLDKRKY-TVKELLSALVVN 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           +AN  + A  E I G+E KF   M  + ++ G+ +    N++GL               D
Sbjct: 119 NANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
                 A D A++   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENCFCATDLAVIARHLLLEFPEVLKLSSKSSTIFAGQTIYSYNYMLKGMPCYREGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
             GY++ +G + V +       ++ VV+    S E D    +     L+   +  Q+   
Sbjct: 239 FVGYSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQL 298

Query: 301 KDN 303
            +N
Sbjct: 299 IEN 301


>gi|118476851|ref|YP_894002.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
           Hakam]
 gi|118416076|gb|ABK84495.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
           Hakam]
          Length = 443

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 88  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 142

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GLHD N  TT  D
Sbjct: 143 ILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYD 202

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +       +I G KTG+T N  
Sbjct: 203 MAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPFSIGG-KTGFT-NEA 259

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 260 RNTLVLLNEKDGNRIINVVMA 280


>gi|269128157|ref|YP_003301527.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Thermomonospora curvata DSM 43183]
 gi|268313115|gb|ACY99489.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Thermomonospora curvata DSM 43183]
          Length = 1003

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 111/236 (47%), Gaps = 25/236 (10%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP---VS 107
           P+    V+DV      G  QD+   P AS+ K+MT Y+   +L++  L      P   +S
Sbjct: 654 PRSGQAVLDVEGIGTMGATQDQRPIPTASVAKVMTAYV---FLKNHPLEPGEDGPTFTIS 710

Query: 108 KTAATQNP-------SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
              A + P       S + ++    FT  + + AL+  SAN+++     + SGS   F  
Sbjct: 711 AEEAARLPFRKKRGESHVDVRAGQRFTERKALEALMVVSANNIAHELARWDSGSISAFVA 770

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA-ILGILLRKNFPQYYKYFSIRKFRY 219
            M+  AK++GM NT Y + SG +D   ++TA DQ  +L   +R   P + +  + R +  
Sbjct: 771 KMNATAKELGMHNTRYTDPSG-YDSGTVSTAADQVKLLRAAMR--IPAFAEIVAERVYDP 827

Query: 220 RN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK----DDPIVAVVMG 269
            +   +    N LL   + I G KTGYT  +G N V + R +    D  ++  VMG
Sbjct: 828 EDGGPVRPAGNVLLGN-YGIVGGKTGYTDAAGGNFVFAARRQVAGVDTLMIGAVMG 882


>gi|206891061|ref|YP_002249135.1| D-alanyl-D-alanine carboxypeptidase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742999|gb|ACI22056.1| D-alanyl-D-alanine carboxypeptidase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 342

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 127/261 (48%), Gaps = 22/261 (8%)

Query: 23  YIQRNIQLMGKILFLSIIMIS---MASELHAKPKY---SSIVIDVNKNQMTGFKQDEPRY 76
           +  + ++ M  ILF+ +++ S   +A E   +      S++ +D    ++   K    + 
Sbjct: 11  FTCKGMRFMCFILFIYVLVYSPEALAQETKKQVDIDAPSAVAVDAQTGKVLYGKNPHIKL 70

Query: 77  P-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQNPSKLYLKEKTYFTTEQGILA 134
           P AS TK++T+ +  E     KL    ++ +S+ AA T + S   ++ + Y   +   LA
Sbjct: 71  PPASTTKLVTVMVALE-----KLDPEHKVTISRKAARTPSVSPKLVEGEVYKVRDLVYLA 125

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD- 193
           L+ RS N  + A  E  +G E+ F  LM++K +KIG ++T + NASGL    Q TT  D 
Sbjct: 126 LM-RSVNSAAVALAEATAGREENFVKLMNDKVQKIGAKDTRFINASGLPGAGQYTTVYDL 184

Query: 194 -----QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
                 A+   L+++    + + + IR    +   I N N+LL    N+ G KTGYTR +
Sbjct: 185 TKIMSHALAYPLIKEAV--HTRVYLIRSENGKEHFIQNTNQLLWAEDNMIGGKTGYTRRA 242

Query: 249 GFNIVTSLRYKDDPIVAVVMG 269
               V++ +     +   ++G
Sbjct: 243 RHCFVSAYKVNGRLVYTAILG 263


>gi|70727253|ref|YP_254169.1| penicillin binding protein 4 [Staphylococcus haemolyticus JCSC1435]
 gi|68447979|dbj|BAE05563.1| penicillin binding protein 4 [Staphylococcus haemolyticus JCSC1435]
          Length = 430

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 108/227 (47%), Gaps = 30/227 (13%)

Query: 69  FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKE 122
           ++ ++  YPAS+TK+MT+Y+  E +   +L LN ++ ++       T    + +KLY  E
Sbjct: 65  YQSNQKWYPASMTKLMTMYLTLEAVNKGELSLNDKVHITDKHYRMSTLPELSNTKLYAGE 124

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
              +T  + +   ++ S+N  +    + +SG+   F  LM+ KAK +GM NT + N +G 
Sbjct: 125 T--YTISELLQITVSNSSNAAALILADEVSGNVNDFTDLMNKKAKALGMSNTHFVNPTGA 182

Query: 183 HDK--------------NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT--- 225
            +K              N  +TA+D AIL   + K  P+   +   ++       +T   
Sbjct: 183 ENKQLKEFAPSKYKNQDNTTSTAKDFAILDHHVIKETPKILHF--TKQLAPTQHGVTYYT 240

Query: 226 -NHNKLLNKMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            NH+    KM     DG+KTG +  + +N   + +  +  I  V+MG
Sbjct: 241 FNHSLEGAKMSLLGTDGLKTGSSDVADYNHTITTKRNNFRINQVIMG 287


>gi|229172016|ref|ZP_04299581.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
 gi|228611359|gb|EEK68616.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
          Length = 407

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 102/201 (50%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 52  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 106

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I G+ + FA +M+ KAK++G  ++ +   +GLHD N  TT  D
Sbjct: 107 ILMVLSANDVSYAIAERIGGNVENFAHMMNEKAKQLGATDSHFVTPNGLHDPNHYTTPYD 166

Query: 194 QAILGILLRKNFPQYYKYFSIRK----FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++       +   I N +      ++I G KTG+T N  
Sbjct: 167 MAMITRGVQK-YPEILQAMNTKRTTVTTSSQTVSIFNKSTYFENPYSIGG-KTGFT-NEA 223

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 224 RNTLVLLNEKDGNRIINVVMA 244


>gi|225570111|ref|ZP_03779136.1| hypothetical protein CLOHYLEM_06207 [Clostridium hylemonae DSM
           15053]
 gi|225161581|gb|EEG74200.1| hypothetical protein CLOHYLEM_06207 [Clostridium hylemonae DSM
           15053]
          Length = 454

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 109/233 (46%), Gaps = 25/233 (10%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           + IV++V    +   K  DE  +PAS+TK++T  +  E  Q     L  ++  +  +   
Sbjct: 73  AGIVMEVGTGAILYAKNIDEHEFPASITKVLTALVALENGQ-----LTDEVTFTHDSVAF 127

Query: 113 --QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI---SGSE-KKFAILMSNKA 166
                S + +KE    + ++ + A +  SAN+ + A GE +   +G +   F   M+ + 
Sbjct: 128 LQPGDSSIGMKEGDVISLDEALHATLLASANEAAYAVGESVGRNAGHDYNWFLEQMNARC 187

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR------YR 220
           K++G +N+ + N +GLHD+N  T ARD A++G  L K+ P+++       +         
Sbjct: 188 KELGGENSHFANTNGLHDENHYTCARDMALIGRELFKH-PEFFDIVQTLNYAIPATDTCE 246

Query: 221 NRIITNHNKLL-----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             I    +K+L     N      G KTGYT ++   ++T        +V VV+
Sbjct: 247 EHIFQQKHKMLIPGNSNYYEYAVGGKTGYTSDALSTLITMAEKDGVRLVCVVL 299


>gi|1420858|emb|CAA61521.1| penicillin-binding protein [Streptococcus pyogenes]
          Length = 324

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 126/277 (45%), Gaps = 26/277 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R I L+   LF +   +S   E     K++ I +D+   ++   K  +   P AS++K
Sbjct: 2   IKRLISLVVIALFFAASTVS-GEEYSVTAKHA-IAVDLESGKVLYEKDAKEVVPVASVSK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ +   KL+ ++ + +S    +       S + L ++ Y T ++ + AL+  
Sbjct: 60  LLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPLDKRKY-TVKELLSALVVN 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           +AN  + A  E I G+E KF   M  + ++ G+ +    N++GL               D
Sbjct: 119 NANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
                 A D A++   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENCFCATDLAVIARHLLLEFPEVLKLSSKSSTIFAGQTIYSYNYMLKGMPCYREGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
             GY++ +G + V +       ++ VV+    S E D
Sbjct: 239 FVGYSKKAGASFVATSVENQMRVITVVLNADQSHEDD 275


>gi|229020609|ref|ZP_04177345.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273]
 gi|228740670|gb|EEL90932.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273]
          Length = 425

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 118/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 55  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 114

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 115 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 174

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 175 KGKHPEGTDPNGENSMSARD---MGILSKTIITKYPEMLEDTKQRFRN-FPDNHPKPI-R 229

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 230 MENWNWMLPGAAFAYEGSDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMDERFTE 289

Query: 280 ALELI 284
           +  LI
Sbjct: 290 SRALI 294


>gi|209558811|ref|YP_002285283.1| Penicillin-binding protein 7 precursor (PBP-7) (D-alanyl-D-alanine-
           endopeptidase) [Streptococcus pyogenes NZ131]
 gi|209540012|gb|ACI60588.1| Penicillin-binding protein 7 precursor (PBP-7) (D-alanyl-D-alanine-
           endopeptidase) [Streptococcus pyogenes NZ131]
          Length = 395

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 126/277 (45%), Gaps = 26/277 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R I L+   LF +   +S   E     K++ I +D+   ++   K  +   P AS++K
Sbjct: 2   IKRLISLVVIALFFAASTVS-GEEYSVTAKHA-IAVDLESGKVLYEKDAKEVVPVASVSK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ +   KL+ ++ + +S    +       S + L ++ Y T ++ + AL+  
Sbjct: 60  LLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPLDKRKY-TVKELLSALVVN 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           +AN  + A  E I G+E KF   M  + ++ G+ +    N++GL               D
Sbjct: 119 NANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
                 A D A++   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENCFCATDLAVIARHLLLEFPEVLKLSSKSSTIFAGQTIYSYNYMLKGMPCYREGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
             GY++ +G + V +       ++ VV+    S E D
Sbjct: 239 FVGYSKKAGASFVATSVENQMRVITVVLNADQSHEDD 275


>gi|167634406|ref|ZP_02392727.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0442]
 gi|254740331|ref|ZP_05198022.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Kruger B]
 gi|167530294|gb|EDR93020.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0442]
          Length = 428

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 103/201 (51%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 73  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 127

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GLHD N+ TT  D
Sbjct: 128 ILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDPNRYTTPYD 187

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +       +I G KTG+T N  
Sbjct: 188 MAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPFSIGG-KTGFT-NEA 244

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 245 RNTLVLLNEKDGNRIINVVMA 265


>gi|324325393|gb|ADY20653.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 428

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 73  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 127

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GLHD N  TT  D
Sbjct: 128 ILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYD 187

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +       +I G KTG+T N  
Sbjct: 188 MAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPFSIGG-KTGFT-NEA 244

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 245 RNTLVLLNEKDGNRIINVVMA 265


>gi|304385702|ref|ZP_07368046.1| serine-type D-Ala-D-Ala carboxypeptidase [Pediococcus acidilactici
           DSM 20284]
 gi|304328206|gb|EFL95428.1| serine-type D-Ala-D-Ala carboxypeptidase [Pediococcus acidilactici
           DSM 20284]
          Length = 415

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 137/291 (47%), Gaps = 38/291 (13%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI- 104
           E+ AK   S++ ID    Q+   K  +   P AS++K+++ Y+I + +QS K+  +  + 
Sbjct: 34  EITAK---SALAIDSETGQVLYEKHADQVLPIASMSKVLSAYLIMKSVQSGKMRWDQPVK 90

Query: 105 ---PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
               ++K +     + + L     +T +  + A +  SAN    A G+  +GS +KF   
Sbjct: 91  INADIAKISENSELTNVPLTAGKSYTVKNLLDASLIYSANAAIIALGKAQAGSSRKFVDK 150

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQIT---------------TARDQAILGILLRKNFP 206
           M    +  G+++    NA+GL + NQ+                +A D A++   + K FP
Sbjct: 151 MRATVRSWGIKDAKLYNAAGLLE-NQVGAEKYPNSPKNAENQMSANDMAVVIQHVLKEFP 209

Query: 207 QYYKYFSIRKFRYRNR----IITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSL 256
           +  +   I+K  +        + NHN+LL      +  + +DG+KTG +  +G +   + 
Sbjct: 210 EILQITKIQKLDFDTGSGKVTMINHNELLPGGAQYDHQYQLDGLKTGTSLAAGEDFAATG 269

Query: 257 RYKDDPIVAVVMGMPTSQE-RDQKAL--ELITSFLEKKT-LKHQQTHRKDN 303
           +     I++VV+G  T Q   D KA+   L+T+    KT LK+Q +   D+
Sbjct: 270 KVNQRRIISVVLGAKTDQRFTDTKAIWQALMTNLTVVKTNLKNQASVVMDS 320


>gi|270290040|ref|ZP_06196266.1| D-alanyl-D-alanine carboxypeptidase [Pediococcus acidilactici 7_4]
 gi|270281577|gb|EFA27409.1| D-alanyl-D-alanine carboxypeptidase [Pediococcus acidilactici 7_4]
          Length = 415

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 135/286 (47%), Gaps = 38/286 (13%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI- 104
           E+ AK   S++ ID    Q+   K  +   P AS++K+++ Y+I + +QS K+  +  + 
Sbjct: 34  EITAK---SALAIDSETGQVLYEKHADQVLPIASMSKVLSAYLIMKSVQSGKMRWDQPVK 90

Query: 105 ---PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
               ++K +     + + L     +T +  + A +  SAN    A G+  +GS +KF   
Sbjct: 91  INADIAKISENSELTNVPLTAGKAYTVKNLLDASLIYSANAAIIALGKAQAGSSRKFVDE 150

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQIT---------------TARDQAILGILLRKNFP 206
           M    +  G+++    NA+GL + NQ+                +A D A++   + K FP
Sbjct: 151 MRATVRSWGIKDAKLYNAAGLLE-NQVGAEKYPNSPKNAENQMSANDMAVVIQHVLKEFP 209

Query: 207 QYYKYFSIRKFRYRNR----IITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSL 256
           +  +   I+K  +        + NHN+LL      +  + +DG+KTG +  +G + V + 
Sbjct: 210 EILQITKIQKLDFDTGSGKVTMINHNELLPGGAQYDHQYQLDGLKTGTSLAAGEDFVATG 269

Query: 257 RYKDDPIVAVVMGMPTSQE-RDQKAL--ELITSFLEKKT-LKHQQT 298
           +     I++VV+G  T     D KA+   L+T+    KT LK+Q +
Sbjct: 270 KVNQRRIISVVLGAKTDHRFTDTKAIWQALMTNLTVVKTNLKNQAS 315


>gi|254733982|ref|ZP_05191696.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Western North America USA6153]
          Length = 407

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 52  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 106

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GLHD N  TT  D
Sbjct: 107 ILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYD 166

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +       +I G KTG+T N  
Sbjct: 167 MAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPFSIGG-KTGFT-NEA 223

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 224 RNTLVLLNEKDGNRIINVVMA 244


>gi|110598043|ref|ZP_01386322.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium ferrooxidans
           DSM 13031]
 gi|110340302|gb|EAT58796.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium ferrooxidans
           DSM 13031]
          Length = 486

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 116/259 (44%), Gaps = 29/259 (11%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSS----------IVIDVNKNQMTGFKQ-DEPRYPAS 79
           +G   F     I++ + LHA+P   S          IV D+  +++   K  D P  PAS
Sbjct: 56  LGICFFAFTASIALPALLHAEPGNGSYQIQAPVDSYIVKDLCSSRVVMAKDIDRPVSPAS 115

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LTK++T  +  E  +     L+  + +++ +    PSK   +          + A +  S
Sbjct: 116 LTKILTCIMAIESGK-----LDQDVVITRESTNVEPSKAGFRVGERIRLLDLVKAAMVNS 170

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK----NQITTARDQA 195
           +ND + A    +SGS   F   M+++A+ IGM+N+ + N +G  DK       +TA D  
Sbjct: 171 SNDAAFAIAIHLSGSVDAFVASMNSRARAIGMRNSRFTNPAGF-DKGIYAGNTSTAGDLL 229

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNR------IITNHNKLLNKMHNIDGIKTGYTRNSG 249
            L     +N P +     + +  +  +       +  HNKLL +     GIKTGYT  +G
Sbjct: 230 CLTEYSVRN-PVFNAVARLDRAVFVEQSTRKVYSLKTHNKLLGRYPYAVGIKTGYTGRAG 288

Query: 250 FNIVTSLRYKDDPIVAVVM 268
             ++     KD+  + +VM
Sbjct: 289 RCLIGRA-IKDNRDILLVM 306


>gi|49184208|ref|YP_027460.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Sterne]
 gi|49178135|gb|AAT53511.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Sterne]
          Length = 434

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 79  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 133

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GLHD N  TT  D
Sbjct: 134 ILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYD 193

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +       +I G KTG+T N  
Sbjct: 194 MAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPFSIGG-KTGFT-NEA 250

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 251 RNTLVLLNEKDGNRIINVVMA 271


>gi|229057005|ref|ZP_04196399.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
 gi|228720282|gb|EEL71858.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
          Length = 407

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 101/201 (50%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 52  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 106

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G +++ +   +GLHD N  TT  D
Sbjct: 107 ILMVLSANDVSYAIAEHIGGSVENFANMMNERAKQLGAKDSHFVTPNGLHDPNHYTTPYD 166

Query: 194 QAILGILLRKNFPQYYKYFS----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  +          +   I N +      ++I G KTG+T N  
Sbjct: 167 MAMITRGVQK-YPEILQAMNTKRTTVTTSTQTVSIFNKSTYFENPYSIGG-KTGFT-NEA 223

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 224 RNTLVLLNEKDGNRIINVVMA 244


>gi|116874163|ref|YP_850944.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|116743041|emb|CAK22165.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 273

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 105/206 (50%), Gaps = 12/206 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL---KEKTYFTTEQGILA 134
           AS+TK+MT +++ E ++  +L  + ++ + +     +PS + L    +K  ++      A
Sbjct: 57  ASITKLMTTFLVLEAVKKGELSWDEKLDLIRL---DDPSAVSLYAITKKRTWSVRDLYSA 113

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLH--DKNQITTA 191
           ++  SAND +   G  + G++  F   M+ +AKK+G+ N T + +ASGL    +  ++T 
Sbjct: 114 MLVMSANDAAETLGNRLDGAD--FPKKMNKEAKKLGLSNKTEFVSASGLDVDGERSVSTT 171

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKF-RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           +D   L   L   +P+     S       +   I + N L+  +  +DG+KTG+T  +G+
Sbjct: 172 KDLYKLSSELISTYPEVLDTTSKSSIITEKGAKIESTNDLIGTIPGLDGLKTGFTDEAGY 231

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQER 276
             + + +     ++++V+   T++ R
Sbjct: 232 CFIGTAKQNGKRVISIVLNSDTAENR 257


>gi|238925625|ref|YP_002939142.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium rectale ATCC
           33656]
 gi|238877301|gb|ACR77008.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium rectale ATCC
           33656]
          Length = 526

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 113/249 (45%), Gaps = 32/249 (12%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
            ++V++VN   +   K   E  YPAS+TK++T Y+    L  K   ++ ++  SK A   
Sbjct: 97  CAVVMEVNTGTVLYEKNSHEKHYPASITKILTTYLTI--LNCK---MDEKVTFSKEAVKE 151

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF----ISGSEKKFAILMSNKA 166
           ++   S +        T EQ +  ++  SAN+ + A  E     + G    F  LM+ +A
Sbjct: 152 SSDGSSSIKRDVGEEMTMEQTLYGVMLESANECAYAAAEHTGKKLGGDYSTFIDLMNKEA 211

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-------RY 219
           K++G  +T + NA+GL D+N  T+A D  ++     +N  ++ K    + +         
Sbjct: 212 KELGCTDTHFNNANGLPDENHWTSAYDMGLISCAAYRN-DEFRKITGTKTYIIPPTNKHT 270

Query: 220 RNRIITNHNKLLNKM--------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
            +  + NH+ +L+          H+  G KTGYT  +   +VT        +  V+M   
Sbjct: 271 EDTPLYNHHAMLHPFKSYSQFVNHDCTGGKTGYTSVANSTLVTYAEKDGLTLCVVIM--- 327

Query: 272 TSQERDQKA 280
            +Q  DQ A
Sbjct: 328 NAQSPDQYA 336


>gi|228926407|ref|ZP_04089479.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229120916|ref|ZP_04250158.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
 gi|228662576|gb|EEL18174.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
 gi|228833231|gb|EEM78796.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 407

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 52  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 106

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GLHD N  TT  D
Sbjct: 107 ILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYD 166

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +       +I G KTG+T N  
Sbjct: 167 MAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPFSIGG-KTGFT-NEA 223

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 224 RNTLVLLNEKDGNRIINVVMA 244


>gi|226225306|ref|YP_002759413.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Listeria monocytogenes Clip81459]
 gi|225877768|emb|CAS06483.1| Putative D-alanyl-D-alanine carboxypeptidase (penicillin-binding
           protein 5) [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|328468231|gb|EGF39237.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes 1816]
          Length = 445

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 28/218 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPS--KLYLKEKTYFTTEQGIL 133
           AS+TKMM  Y++ E +   ++  + ++ +S+ A   +Q+ S   + L+    +T ++   
Sbjct: 65  ASMTKMMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYE 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           A+   SAN  + A  E I+GSEK+F   M+ KA ++ +    + NA+GL+          
Sbjct: 125 AMAIYSANGAAIAISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQV 184

Query: 184 ----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM 234
               D+N++ TAR  A L   L  ++P   K  S  K  +R        +TN N LL  +
Sbjct: 185 GGPKDENKM-TARGMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGL 243

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 +DG+KTG T  +G  +  +       ++ VV+
Sbjct: 244 IYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVL 281


>gi|238917380|ref|YP_002930897.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
           5/6) [Eubacterium eligens ATCC 27750]
 gi|238872740|gb|ACR72450.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
           5/6) [Eubacterium eligens ATCC 27750]
          Length = 370

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 94/174 (54%), Gaps = 23/174 (13%)

Query: 39  IIMISMASE---LHAKPKYSS---IVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFE 91
           +I   MAS+   L ++ K SS    ++DV+ +++   KQ + R YPAS+TK+MTL ++ +
Sbjct: 89  LIYAQMASDYFDLTSESKVSSPYAALLDVDNHKIIAGKQADTRMYPASMTKVMTLIVVTD 148

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTY--------FTTEQGILALITRSANDV 143
            +         +IP + T   +  ++L+ +E +            E  +  LI  S  D 
Sbjct: 149 NID--------KIPQTYTFGFEMLNRLFREEASVAGFLDGETVDVEDLLYGLILPSGADA 200

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           + A    ++GS ++FA LM+ K  ++G+++T + N +GL+D+ Q TT  + A++
Sbjct: 201 AEALAIMVAGSNEEFAKLMNAKCNELGLKHTRFANPTGLYDEEQYTTPAEMAMI 254


>gi|229017877|ref|ZP_04174760.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273]
 gi|228743468|gb|EEL93585.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273]
          Length = 272

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 109/223 (48%), Gaps = 24/223 (10%)

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT YI+ E L   K+ L+  + +         S + +  K   T    + AL+    N  
Sbjct: 1   MTEYIVMEQLHDGKIQLDESVKIRNEVFQTETSPIQVTSKDNTTVRDLLHALLLTGNNRS 60

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGM-QNTIYKNASGLH---DKNQITTARDQAILGI 199
           + A  E I+G+E  F  LM+ KAK++ + Q + + N++G++   ++  ITTA D A +  
Sbjct: 61  ALALAEHIAGNEDNFTSLMNEKAKQLKLSQQSPFLNSTGINSEKNRQSITTAIDAAEIAA 120

Query: 200 LLRKNFPQYY---KYFSIRKFRYRNRIITNHNKL---LN---KMHNIDGIKTGYTRNSGF 250
            L K++P      K  S R F +++  + N NK+   LN   K+ ++DG+++  + N  +
Sbjct: 121 QLIKDYPDVLNITKQTSYR-FTFKDVQVFNTNKMIYSLNKNIKLKDVDGLQSSLSTNGNY 179

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
           + V++    D   ++VV+           A E  T+F+E K L
Sbjct: 180 SFVSTANQGDTRFISVVLD----------ANEENTAFVETKKL 212


>gi|49477173|ref|YP_035504.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|196035444|ref|ZP_03102849.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           W]
 gi|196046527|ref|ZP_03113752.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           03BB108]
 gi|225863238|ref|YP_002748616.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           03BB102]
 gi|49328729|gb|AAT59375.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|195992121|gb|EDX56084.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           W]
 gi|196022711|gb|EDX61393.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           03BB108]
 gi|225788080|gb|ACO28297.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 03BB102]
          Length = 428

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 73  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 127

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GLHD N  TT  D
Sbjct: 128 ILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYD 187

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +       +I G KTG+T N  
Sbjct: 188 MAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPFSIGG-KTGFT-NEA 244

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 245 RNTLVLLNEKDGNRIINVVMA 265


>gi|229166209|ref|ZP_04293969.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
 gi|228617307|gb|EEK74372.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
          Length = 407

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 101/201 (50%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 52  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 106

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G +++ +   +GLHD N  TT  D
Sbjct: 107 ILMVLSANDVSYAIAEHIGGSVENFANMMNERAKQLGAKDSHFVTPNGLHDPNHYTTPYD 166

Query: 194 QAILGILLRKNFPQYYKYFS----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  +          +   I N +      ++I G KTG+T N  
Sbjct: 167 MAMITRGVQK-YPEILQAMNTKRTTVTTSTQTVSIFNKSTYFENPYSIGG-KTGFT-NEA 223

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 224 RNTLVLLNEKDGNRIINVVMA 244


>gi|229824756|ref|ZP_04450825.1| hypothetical protein GCWU000182_00104 [Abiotrophia defectiva ATCC
           49176]
 gi|229791085|gb|EEP27199.1| hypothetical protein GCWU000182_00104 [Abiotrophia defectiva ATCC
           49176]
          Length = 329

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 126/242 (52%), Gaps = 27/242 (11%)

Query: 48  LHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           L  KP +++  + V+ ++   + ++  +  YPASLTKMMT Y++F    +K+ +L+  + 
Sbjct: 68  LTDKPSFNAKSVIVSSDEEAIYSKNCFKKMYPASLTKMMTAYVVF----AKEKNLDRTVK 123

Query: 106 V-SKTAATQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           +  ++     P   K+ L +    T  Q + A +  SAND + A    ++GSE+KFA LM
Sbjct: 124 IDGESIKISEPLAKKIRLMDGDEVTIRQLLNAALVTSANDAAKALAVAVAGSEEKFAALM 183

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF--RYR 220
           + +AKKIG  ++ + N++GLHD    +T  D  ++   L KN  ++ K  +   +  +++
Sbjct: 184 NEEAKKIGATHSRFVNSTGLHDTAHYSTLYDLYLIFNELLKN-SEFVKIVNQGSYTMKHK 242

Query: 221 N-------RIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDP--IVA 265
           N       + +++ N+ L  +      + + G KTG T  +G  I+ S +   D   IV 
Sbjct: 243 NSAGVEVVKTMSSTNQYLAGVMKVPDGYTVIGGKTGTTDEAGSCILMSFKSSSDKKYIVG 302

Query: 266 VV 267
           V+
Sbjct: 303 VL 304


>gi|332851496|ref|ZP_08433493.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6013150]
 gi|332866804|ref|ZP_08437208.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6013113]
 gi|194474667|gb|ACF74453.1| D-alanyl-D-alanine endopeptidase penicillin-binding protein 7/8
           [Acinetobacter baumannii]
 gi|332729949|gb|EGJ61280.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6013150]
 gi|332734412|gb|EGJ65532.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6013113]
          Length = 340

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 114/253 (45%), Gaps = 28/253 (11%)

Query: 49  HAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYL--QSKKLHLNT 102
           +A+P  S+   +V+D    ++   K      P AS+TK+MT  +  +     S+++ L  
Sbjct: 89  NAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKLMTAVVTADARLNMSEEITLE- 147

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           QI  +      + S L + +K      + +L  + +S N  + A      G    F   M
Sbjct: 148 QIDFAGAGGKNSSSTLRVGDK--MNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAAM 205

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR---- 218
           + KA+ +GM  T Y  ++GL  +N +++ARD   LGIL         +Y  IR+F     
Sbjct: 206 NAKARALGMNATHYYESTGLDPRN-VSSARD---LGILAST----ASQYGLIRQFSTTPT 257

Query: 219 ------YRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
                 YR     N N L+ N   NI+  KTGY   +G  +V        P V V++G P
Sbjct: 258 YDFNLGYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEP 317

Query: 272 TSQERDQKALELI 284
           ++Q R+  A  L+
Sbjct: 318 STQARNNDATNLL 330


>gi|169797496|ref|YP_001715289.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter baumannii
           AYE]
 gi|260556388|ref|ZP_05828607.1| D-alanyl-D-alanine endopeptidase [Acinetobacter baumannii ATCC
           19606]
 gi|169150423|emb|CAM88320.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter baumannii
           AYE]
 gi|260410443|gb|EEX03742.1| D-alanyl-D-alanine endopeptidase [Acinetobacter baumannii ATCC
           19606]
          Length = 348

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 114/253 (45%), Gaps = 28/253 (11%)

Query: 49  HAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYL--QSKKLHLNT 102
           +A+P  S+   +V+D    ++   K      P AS+TK+MT  +  +     S+++ L  
Sbjct: 97  NAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKLMTAVVTADARLNMSEEITLE- 155

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           QI  +      + S L + +K      + +L  + +S N  + A      G    F   M
Sbjct: 156 QIDFAGAGGKNSSSTLRVGDK--MNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAAM 213

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR---- 218
           + KA+ +GM  T Y  ++GL  +N +++ARD   LGIL         +Y  IR+F     
Sbjct: 214 NAKARALGMNATHYYESTGLDPRN-VSSARD---LGILAST----ASQYGLIRQFSTTPT 265

Query: 219 ------YRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
                 YR     N N L+ N   NI+  KTGY   +G  +V        P V V++G P
Sbjct: 266 YDFNLGYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEP 325

Query: 272 TSQERDQKALELI 284
           ++Q R+  A  L+
Sbjct: 326 STQARNNDATNLL 338


>gi|47092644|ref|ZP_00230431.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str. 4b
           H7858]
 gi|47018939|gb|EAL09685.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str. 4b
           H7858]
          Length = 433

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 28/218 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPS--KLYLKEKTYFTTEQGIL 133
           AS+TKMM  Y++ E +   ++  + ++ +S+ A   +Q+ S   + L+    +T ++   
Sbjct: 53  ASMTKMMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYE 112

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           A+   SAN  + A  E I+GSEK+F   M+ KA ++ +    + NA+GL+          
Sbjct: 113 AMAIYSANGAAIAISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQV 172

Query: 184 ----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM 234
               D+N++ TAR  A L   L  ++P   K  S  K  +R        +TN N LL  +
Sbjct: 173 GGPKDENKM-TARGMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGL 231

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 +DG+KTG T  +G  +  +       ++ VV+
Sbjct: 232 IYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVL 269


>gi|254851941|ref|ZP_05241289.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           R2-503]
 gi|254994152|ref|ZP_05276342.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           J2-064]
 gi|255520022|ref|ZP_05387259.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           J1-175]
 gi|300763487|ref|ZP_07073485.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           N1-017]
 gi|258605239|gb|EEW17847.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           R2-503]
 gi|300515764|gb|EFK42813.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           N1-017]
          Length = 445

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 28/218 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPS--KLYLKEKTYFTTEQGIL 133
           AS+TKMM  Y++ E +   ++  + ++ +S+ A   +Q+ S   + L+    +T ++   
Sbjct: 65  ASMTKMMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYE 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           A+   SAN  + A  E I+GSEK+F   M+ KA ++ +    + NA+GL+          
Sbjct: 125 AMAIYSANGAAIAISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQV 184

Query: 184 ----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM 234
               D+N++ TAR  A L   L  ++P   K  S  K  +R        +TN N LL  +
Sbjct: 185 GGPKDENKM-TARGMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGL 243

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 +DG+KTG T  +G  +  +       ++ VV+
Sbjct: 244 IYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVL 281


>gi|42780462|ref|NP_977709.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           ATCC 10987]
 gi|42736381|gb|AAS40317.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           ATCC 10987]
          Length = 428

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 73  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 127

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GLHD N  TT  D
Sbjct: 128 ILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYD 187

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +       +I G KTG+T N  
Sbjct: 188 MAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPFSIGG-KTGFT-NEA 244

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 245 RNTLVLLNEKDGNRIINVVMA 265


>gi|4104145|gb|AAD01953.1| penicillin-binding protein homolog [Listeria monocytogenes]
          Length = 433

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 28/218 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPS--KLYLKEKTYFTTEQGIL 133
           AS+TKMM  Y++ E +   ++  + ++ +S+ A   +Q+ S   + L+    +T ++   
Sbjct: 53  ASMTKMMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYE 112

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           A+   SAN  + A  E I+GSEK+F   M+ KA ++ +    + NA+GL+          
Sbjct: 113 AMAIYSANGAAIAISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQV 172

Query: 184 ----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM 234
               D+N++ TAR  A L   L  ++P   K  S  K  +R        +TN N LL  +
Sbjct: 173 GGPKDENKM-TARGMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGL 231

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 +DG+KTG T  +G  +  +       ++ VV+
Sbjct: 232 IYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVL 269


>gi|170686750|ref|ZP_02877970.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0465]
 gi|254682564|ref|ZP_05146425.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|170669273|gb|EDT20016.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0465]
          Length = 428

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 73  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 127

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GLHD N  TT  D
Sbjct: 128 ILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYD 187

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +       +I G KTG+T N  
Sbjct: 188 MAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPFSIGG-KTGFT-NEA 244

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 245 RNTLVLLNEKDGNRIINVVMA 265


>gi|254824881|ref|ZP_05229882.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           J1-194]
 gi|293594121|gb|EFG01882.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           J1-194]
          Length = 445

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 28/218 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPS--KLYLKEKTYFTTEQGIL 133
           AS+TKMM  Y++ E +   ++  + ++ +S+ A   +Q+ S   + L+    +T ++   
Sbjct: 65  ASMTKMMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYE 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           A+   SAN  + A  E I+GSEK+F   M+ KA ++ +    + NA+GL+          
Sbjct: 125 AMAIYSANGAAIAISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQV 184

Query: 184 ----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM 234
               D+N++ TAR  A L   L  ++P   K  S  K  +R        +TN N LL  +
Sbjct: 185 GGPKDENKM-TARGMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGL 243

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 +DG+KTG T  +G  +  +       ++ VV+
Sbjct: 244 IYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVL 281


>gi|193076105|gb|ABO10712.2| D-alanyl-D-alanine endopeptidase penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter baumannii
           ATCC 17978]
          Length = 348

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 114/253 (45%), Gaps = 28/253 (11%)

Query: 49  HAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYL--QSKKLHLNT 102
           +A+P  S+   +V+D    ++   K      P AS+TK+MT  +  +     S+++ L  
Sbjct: 97  NAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKLMTAVVTADARLNMSEEITLE- 155

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           QI  +      + S L + +K      + +L  + +S N  + A      G    F   M
Sbjct: 156 QIDFAGAGGKNSSSTLRVGDK--MNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAAM 213

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR---- 218
           + KA+ +GM  T Y  ++GL  +N +++ARD   LGIL         +Y  IR+F     
Sbjct: 214 NAKARALGMNATHYYESTGLDPRN-VSSARD---LGILAST----ASQYGLIRQFSTTPT 265

Query: 219 ------YRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
                 YR     N N L+ N   NI+  KTGY   +G  +V        P V V++G P
Sbjct: 266 YDFNLGYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEP 325

Query: 272 TSQERDQKALELI 284
           ++Q R+  A  L+
Sbjct: 326 STQARNNDATNLL 338


>gi|46908941|ref|YP_015330.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|254930973|ref|ZP_05264332.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes
           HPB2262]
 gi|46882214|gb|AAT05507.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|293582519|gb|EFF94551.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes
           HPB2262]
 gi|328469102|gb|EGF40050.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes 220]
 gi|332313185|gb|EGJ26280.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str.
           Scott A]
          Length = 445

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 28/218 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPS--KLYLKEKTYFTTEQGIL 133
           AS+TKMM  Y++ E +   ++  + ++ +S+ A   +Q+ S   + L+    +T ++   
Sbjct: 65  ASMTKMMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYE 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           A+   SAN  + A  E I+GSEK+F   M+ KA ++ +    + NA+GL+          
Sbjct: 125 AMAIYSANGAAIAISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQV 184

Query: 184 ----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM 234
               D+N++ TAR  A L   L  ++P   K  S  K  +R        +TN N LL  +
Sbjct: 185 GGPKDENKM-TARGMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGL 243

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 +DG+KTG T  +G  +  +       ++ VV+
Sbjct: 244 IYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVL 281


>gi|30261380|ref|NP_843757.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Ames]
 gi|47526551|ref|YP_017900.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|65318644|ref|ZP_00391603.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A2012]
 gi|165870392|ref|ZP_02215047.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0488]
 gi|170706252|ref|ZP_02896713.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0389]
 gi|227815884|ref|YP_002815893.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. CDC 684]
 gi|229603883|ref|YP_002865796.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0248]
 gi|254726225|ref|ZP_05188007.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A1055]
 gi|254753718|ref|ZP_05205753.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Vollum]
 gi|254758814|ref|ZP_05210841.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Australia 94]
 gi|30255234|gb|AAP25243.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
           Ames]
 gi|47501699|gb|AAT30375.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|164713887|gb|EDR19409.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0488]
 gi|170128786|gb|EDS97652.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0389]
 gi|227004270|gb|ACP14013.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
           CDC 684]
 gi|229268291|gb|ACQ49928.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0248]
          Length = 428

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 73  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 127

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GLHD N  TT  D
Sbjct: 128 ILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYD 187

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +       +I G KTG+T N  
Sbjct: 188 MAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPFSIGG-KTGFT-NEA 244

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 245 RNTLVLLNEKDGNRIINVVMA 265


>gi|262164415|ref|ZP_06032153.1| murein-DD-endopeptidase [Vibrio mimicus VM223]
 gi|262026795|gb|EEY45462.1| murein-DD-endopeptidase [Vibrio mimicus VM223]
          Length = 317

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 102/214 (47%), Gaps = 27/214 (12%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAAT 112
           S++VID+  N++      D  R  AS+TK+MT  +  +     KL ++T++P++ K A  
Sbjct: 50  SALVIDLKTNEVIYSSNPDAVRPIASVTKLMTAIVTLD----AKLPMDTKLPITIKEAKE 105

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  ++  +  + +  +L  +  S N  + +      G  K F   M+NKAK +GM+
Sbjct: 106 MKGVHSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNNKAKALGMK 165

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-------------FRY 219
           NT +   +GL +KN +++ARD  +L +   K +P   +  +  K             FR 
Sbjct: 166 NTRFVEPTGLSEKN-VSSARDLVLL-LKASKKYPMLGQLSATEKKTVTFAKPRYSLDFRN 223

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            NR++ N N        ID  KTG+T  +G  +V
Sbjct: 224 TNRLVFNDN------WKIDLTKTGFTNAAGHCLV 251


>gi|184156580|ref|YP_001844919.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii ACICU]
 gi|332874936|ref|ZP_08442787.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6014059]
 gi|183208174|gb|ACC55572.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii ACICU]
 gi|332736879|gb|EGJ67855.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6014059]
          Length = 340

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 114/253 (45%), Gaps = 28/253 (11%)

Query: 49  HAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYL--QSKKLHLNT 102
           +A+P  S+   +V+D    ++   K      P AS+TK+MT  +  +     S+++ L  
Sbjct: 89  NAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKLMTAVVTADARLNMSEEITLE- 147

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           QI  +      + S L + +K      + +L  + +S N  + A      G    F   M
Sbjct: 148 QIDFAGAGGKNSSSTLRVGDK--MNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAAM 205

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR---- 218
           + KA+ +GM  T Y  ++GL  +N +++ARD   LGIL         +Y  IR+F     
Sbjct: 206 NAKARALGMNATHYYESTGLDPRN-VSSARD---LGILAST----ASQYGLIRQFSTTPT 257

Query: 219 ------YRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
                 YR     N N L+ N   NI+  KTGY   +G  +V        P V V++G P
Sbjct: 258 YDFNLGYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEP 317

Query: 272 TSQERDQKALELI 284
           ++Q R+  A  L+
Sbjct: 318 STQARNNDATNLL 330


>gi|213155690|ref|YP_002317735.1| D-alanyl-D-alanine carboxypeptidase family protein [Acinetobacter
           baumannii AB0057]
 gi|215484932|ref|YP_002327171.1| Penicillin-binding protein 7 precursor (PBP-7) [Acinetobacter
           baumannii AB307-0294]
 gi|239502064|ref|ZP_04661374.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter baumannii
           AB900]
 gi|301346537|ref|ZP_07227278.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter baumannii
           AB056]
 gi|301512073|ref|ZP_07237310.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter baumannii
           AB058]
 gi|301594839|ref|ZP_07239847.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter baumannii
           AB059]
 gi|213054850|gb|ACJ39752.1| D-alanyl-D-alanine carboxypeptidase family protein [Acinetobacter
           baumannii AB0057]
 gi|213986566|gb|ACJ56865.1| Penicillin-binding protein 7 precursor (PBP-7) [Acinetobacter
           baumannii AB307-0294]
          Length = 335

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 114/253 (45%), Gaps = 28/253 (11%)

Query: 49  HAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYL--QSKKLHLNT 102
           +A+P  S+   +V+D    ++   K      P AS+TK+MT  +  +     S+++ L  
Sbjct: 84  NAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKLMTAVVTADARLNMSEEITLE- 142

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           QI  +      + S L + +K      + +L  + +S N  + A      G    F   M
Sbjct: 143 QIDFAGAGGKNSSSTLRVGDK--MNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAAM 200

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR---- 218
           + KA+ +GM  T Y  ++GL  +N +++ARD   LGIL         +Y  IR+F     
Sbjct: 201 NAKARALGMNATHYYESTGLDPRN-VSSARD---LGILAST----ASQYGLIRQFSTTPT 252

Query: 219 ------YRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
                 YR     N N L+ N   NI+  KTGY   +G  +V        P V V++G P
Sbjct: 253 YDFNLGYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEP 312

Query: 272 TSQERDQKALELI 284
           ++Q R+  A  L+
Sbjct: 313 STQARNNDATNLL 325


>gi|47566159|ref|ZP_00237187.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus
           G9241]
 gi|47556712|gb|EAL15043.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus
           G9241]
          Length = 428

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 73  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 127

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GLHD N  TT  D
Sbjct: 128 ILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPFD 187

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +       +I G KTG+T N  
Sbjct: 188 MAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPFSIGG-KTGFT-NEA 244

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 245 RNTLVLLNEKDGNRIINVVMA 265


>gi|322506467|gb|ADX01921.1| pbpG [Acinetobacter baumannii 1656-2]
 gi|323516346|gb|ADX90727.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 335

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 114/253 (45%), Gaps = 28/253 (11%)

Query: 49  HAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYL--QSKKLHLNT 102
           +A+P  S+   +V+D    ++   K      P AS+TK+MT  +  +     S+++ L  
Sbjct: 84  NAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKLMTAVVTADARLNMSEEITLE- 142

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           QI  +      + S L + +K      + +L  + +S N  + A      G    F   M
Sbjct: 143 QIDFAGAGGKNSSSTLRVGDK--MNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAAM 200

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR---- 218
           + KA+ +GM  T Y  ++GL  +N +++ARD   LGIL         +Y  IR+F     
Sbjct: 201 NAKARALGMNATHYYESTGLDPRN-VSSARD---LGILAST----ASQYGLIRQFSTTPT 252

Query: 219 ------YRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
                 YR     N N L+ N   NI+  KTGY   +G  +V        P V V++G P
Sbjct: 253 YDFNLGYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEP 312

Query: 272 TSQERDQKALELI 284
           ++Q R+  A  L+
Sbjct: 313 STQARNNDATNLL 325


>gi|228984448|ref|ZP_04144626.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229154942|ref|ZP_04283056.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
 gi|228628500|gb|EEK85213.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
 gi|228775314|gb|EEM23702.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 407

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 52  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 106

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GLHD N  TT  D
Sbjct: 107 ILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPFD 166

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +       +I G KTG+T N  
Sbjct: 167 MAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPFSIGG-KTGFT-NEA 223

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 224 RNTLVLLNEKDGNRIINVVMA 244


>gi|221194412|ref|ZP_03567469.1| D-alanyl-D-alanine carboxypeptidase [Atopobium rimae ATCC 49626]
 gi|221185316|gb|EEE17706.1| D-alanyl-D-alanine carboxypeptidase [Atopobium rimae ATCC 49626]
          Length = 381

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 108/235 (45%), Gaps = 27/235 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           S+I+ D   N +     D     AS+TK+MT  +           L++ I + K     N
Sbjct: 38  SAILEDDQGNVLWSKDPDRKMGMASITKVMTAMVA----------LDSGIDLDKPC---N 84

Query: 115 PSKLYLKEKT----YFTTEQGIL-----ALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
              + L+E +    Y T+E   L      L+  SANDV+      ++GS++ FA LM+ K
Sbjct: 85  IVSVDLEEGSVLANYSTSEHPTLRELLQVLLVHSANDVAYNIAINVAGSQEAFADLMNKK 144

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRN 221
           A +IGM NT + N  GL   +  +TARD A++    R+++P      S+       +   
Sbjct: 145 AAEIGMTNTHFSNPHGLDADDHYSTARDLALMARYAREHYPFLASTVSMTSVTATVQGEE 204

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
               + +KLL+    + G+KTG + +SG   + + R     + + V+G  T   R
Sbjct: 205 VTWPSTDKLLSTYPGMLGLKTG-SEDSGTAFLGAARRNGVTLYSCVLGCATDSGR 258


>gi|225575670|ref|ZP_03784280.1| hypothetical protein RUMHYD_03763 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037127|gb|EEG47373.1| hypothetical protein RUMHYD_03763 [Blautia hydrogenotrophica DSM
           10507]
          Length = 337

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 4/130 (3%)

Query: 69  FKQDEPRYPASLTKMMTLYIIFEYLQS--KKLHLNTQIPVSKTAATQNPSKLYLKEKTYF 126
            + +E  +PAS+TKMMT  + +E L     K+ LN  +    T    + +     E+   
Sbjct: 77  LRSEEKMFPASMTKMMTALVAYEQLSDLQTKITLNPDMFDKLTEEGASMAGFSAGEEV-- 134

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           T    +  ++  S  +      E+I+G E+ F  LM+ KA ++GM +T + N +GLHD+N
Sbjct: 135 TALDLLYGVLLPSGAECCIGLAEYIAGDEESFVELMNQKATELGMNHTHFCNPTGLHDEN 194

Query: 187 QITTARDQAI 196
             TT  D AI
Sbjct: 195 HYTTVSDMAI 204


>gi|313621847|gb|EFR92532.1| serine-type D-Ala-D-Ala carboxypeptidase [Listeria innocua FSL
           J1-023]
          Length = 272

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 107/212 (50%), Gaps = 24/212 (11%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL---KEKTYFTTEQGILA 134
           ASLTK+MT +++ E + + +L  + ++ + +     +PS + L    +K  ++      A
Sbjct: 57  ASLTKLMTAFLVLEAVDNNELSWDEELDLVR---LDDPSAVSLYAITQKRTWSVRDLYNA 113

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM-QNTIYKNASGL--HDKNQITTA 191
           ++  SAND +   G  +   +  F   M+N+AKK+G+ + T + +ASGL    K  ++T 
Sbjct: 114 MLVMSANDAAETLGNRL--DDANFPQKMNNEAKKLGLSKKTKFVSASGLDVDGKMAVSTT 171

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH-------NKLLNKMHNIDGIKTGY 244
           +D  +L   L    P+  +  S      ++ IIT         N  +  +  +DG+KTG+
Sbjct: 172 KDLFLLSSKLISTHPEVLETTS------KSSIITEEGATLESTNDSIGSIQGLDGLKTGF 225

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           T  +G+  + + +     ++++V+   T+++R
Sbjct: 226 TDEAGYCFIGTAKRDGKRVISIVLDAGTAEKR 257


>gi|306821313|ref|ZP_07454923.1| possible beta-lactamase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550654|gb|EFM38635.1| possible beta-lactamase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 383

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 11/205 (5%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK--TAATQNPS----KLYLKEKTY 125
           D  R  AS+TK++ + +I + +++  L +N ++ +S+  +A + +P+    + +   +TY
Sbjct: 38  DSKRTIASMTKVLAVAVILDEIKAGNLSMNDKVAISEYASAISHDPAWAAYECFQVGETY 97

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            T +  +   +  S+N    A GE ISGS   FAI M+  A KIGM+   +   SG+ + 
Sbjct: 98  -TVKTLLTNAVVSSSNASIIAIGEHISGSTANFAIKMNTLAAKIGMEGN-FTEPSGIDEA 155

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH-NK-LLNKMHNIDGIKTG 243
           N +TTA+    LG  +  N  +  K  ++ K  Y   I     NK LLN  + I+G+KTG
Sbjct: 156 N-VTTAKSMLKLGKYMYDNHEKEIKKMTMLKEVYIKGISKEATNKLLLNDYYGIEGLKTG 214

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVM 268
                  N +   +  +  ++AV M
Sbjct: 215 AYSLDNANFIGVAKRGNKRLIAVTM 239


>gi|260437075|ref|ZP_05790891.1| serine-type D-Ala-D-Ala carboxypeptidase [Butyrivibrio crossotus
           DSM 2876]
 gi|292810384|gb|EFF69589.1| serine-type D-Ala-D-Ala carboxypeptidase [Butyrivibrio crossotus
           DSM 2876]
          Length = 396

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 130/286 (45%), Gaps = 46/286 (16%)

Query: 31  MGKILFLSIIMISMA---------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASL 80
           M KIL + II + M            L+A+   ++I+ID +  ++   K +    P AS 
Sbjct: 1   MKKILAVIIIAVVMCQSVTKGEEPENLYAR---AAILIDADSGRILYGKNENDVMPMAST 57

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           TK+MTL +  +Y        + ++  S  AA +   +L   +   +T  + +  ++ RS 
Sbjct: 58  TKIMTLLVALKYGNP-----SDRVTFSSYAAKEPDVQLNALKGEQYTLNELLYLMMLRSY 112

Query: 141 NDVSTAFGEFISG-----------------SEKKFAILMSNKAKKIGMQNTIYKNASGL- 182
           NDV+    E++ G                   K+F   M+  A K+G+ +T +   +GL 
Sbjct: 113 NDVAMMVAEYVGGVLNGDTSPNNTTEESKEDVKRFIDEMNGYAVKLGLSDTYFVTPNGLD 172

Query: 183 -HDKNQI--TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR------IITNHNKLLNK 233
             D+ +I  TTA + A++     K+  +  K  + + F YR +       +TN N+ L+ 
Sbjct: 173 GEDEGRIHSTTAYELALIAREALKS-EEVIKICTTKSFSYREQNGKRSGTVTNGNRFLDI 231

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
             N  G+KTG+T  +G+  V + +  D   ++VV+G      ++ K
Sbjct: 232 NKNAIGMKTGFTGKAGYCFVGATKVDDRTFISVVLGCGWPPNKNYK 277


>gi|228942535|ref|ZP_04105070.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228982101|ref|ZP_04142393.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
 gi|228777639|gb|EEM25914.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
 gi|228817128|gb|EEM63218.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326943187|gb|AEA19083.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 423

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 118/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 53  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 112

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
            ++   +++  SAN  S A  E ++ SEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 113 VKELYHSIVIFSANGSSIALAELLAESEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 172

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD  IL  ++   +P+        K R+RN    NH K + +
Sbjct: 173 KGKHPEGTDPNAENSMSARDMGILSKVMITKYPE---MLEDTKQRFRN-FPDNHPKPI-R 227

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 228 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMDERFTE 287

Query: 280 ALELI 284
           + ELI
Sbjct: 288 SRELI 292


>gi|306828006|ref|ZP_07461272.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pyogenes
           ATCC 10782]
 gi|304429787|gb|EFM32830.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pyogenes
           ATCC 10782]
          Length = 410

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 133/303 (43%), Gaps = 26/303 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R I L+   LF +   +S   E     K+  I +D+   ++   K  +   P AS++K
Sbjct: 2   IKRLISLVVIALFFAASTVS-GEEYSVTAKHV-IAVDLESGKVLYEKDAKEVVPVASVSK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ +   KL+ ++ + +S    +       S + L ++ Y T ++ + AL+  
Sbjct: 60  LLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPLDKRKY-TVKELLSALVVN 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           +AN  + A  E I G+E KF   M  + ++ G+ +    N++GL               D
Sbjct: 119 NANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
                 A D AI+   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIFDGQTIYSYNYMLKGMPCYREGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
             GY++ +G + V +       ++ VV+    S E D    +     L+   +  Q+   
Sbjct: 239 FVGYSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQL 298

Query: 301 KDN 303
            +N
Sbjct: 299 IEN 301


>gi|158317707|ref|YP_001510215.1| Serine-type D-Ala-D-Ala carboxypeptidase [Frankia sp. EAN1pec]
 gi|158113112|gb|ABW15309.1| Serine-type D-Ala-D-Ala carboxypeptidase [Frankia sp. EAN1pec]
          Length = 465

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 82/194 (42%), Gaps = 16/194 (8%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           P  PAS  KM+T   +   L   +     ++ +S  AA  + +++ L     +T      
Sbjct: 31  PDLPASTMKMLTALTVLPGLPPDR-----EVTISDQAAQVDGTRVGLVPGVRYTVRDLAT 85

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAIL--MSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           A++  S ND + A  E   G E   A+L  M+  A  +G   T+  + +GL    Q TTA
Sbjct: 86  AMLIASGNDATVALVEAAGGRE---AVLDRMNRLAASLGASETVAGDPTGLDAPGQHTTA 142

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKMHNIDGIKTGYTR 246
            D A++G     N P    Y +I +     R      I NHN L+       GIK GYT 
Sbjct: 143 HDLAVIGRAT-LNDPIVRGYLTIPRASLPGRGDERFEIANHNTLIGSYEGTIGIKNGYTV 201

Query: 247 NSGFNIVTSLRYKD 260
            +G   V +    D
Sbjct: 202 AAGATFVGAATRND 215


>gi|283779427|ref|YP_003370182.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pirellula
           staleyi DSM 6068]
 gi|283437880|gb|ADB16322.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pirellula
           staleyi DSM 6068]
          Length = 677

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 100/227 (44%), Gaps = 21/227 (9%)

Query: 69  FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           +++D+    AS TK+MT  ++          L+  + +S  A     S  +++E      
Sbjct: 424 YEEDDKLDIASTTKLMTALVVARMAGENASLLDEVVTISAAADATPGSSAWIREGEKLQL 483

Query: 129 EQGILALITRSANDVSTAFGEFISG----SEKKFAIL------MSNKAKKIGMQNTIYKN 178
            + +  L+  S ND S A  E I       ++K A L      M+  A ++GM +T YKN
Sbjct: 484 RELLYGLLLPSGNDASVAVAEHIGSKLMLDDRKPAPLDRFIAEMNKVAAELGMSDTSYKN 543

Query: 179 ASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS--IRKFRY-------RNRIITNHNK 229
             GL ++   ++ RDQ  L   +    P    YF   IR  R        RN    N N+
Sbjct: 544 PHGLTEEGHFSSVRDQLKLARTI-VGTPMLAPYFEARIRGARIESEMGYQRNVAWKNSNR 602

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           LL+      G+KTG T  +G  +V+  +  +  +V VV+G  +S  R
Sbjct: 603 LLD-YEGYRGLKTGTTDAAGACLVSHFQQGEVDLVCVVLGSTSSDGR 648


>gi|294673565|ref|YP_003574181.1| serine-type D-Ala-D-Ala carboxypeptidase [Prevotella ruminicola 23]
 gi|294471981|gb|ADE81370.1| serine-type D-Ala-D-Ala carboxypeptidase [Prevotella ruminicola 23]
          Length = 280

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 18/195 (9%)

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYF 126
            GF   E RY AS+TKMMT  I  E     K +L+  I +++       S++ L +   +
Sbjct: 52  CGF---ERRYMASITKMMTALIALE-----KGNLSDSIDITEDVFINRDSRVRLGQG--Y 101

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
                I  ++  S ND + A  + + G   +F  LM+ KA+ +GM +T + N +G+ + N
Sbjct: 102 VMLDLIYEMMMISDNDAAYALAKHVGGDTLRFYDLMNQKAQYLGMDSTHFANPNGMPNDN 161

Query: 187 QITTARD------QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI 240
             ++A D       A+   +         K   +   R+ +    N N LL+      GI
Sbjct: 162 NFSSAADLVKLARYAMRDTMFASIVGTAEKAVPLTDGRHMD--CRNSNALLHTYEGCIGI 219

Query: 241 KTGYTRNSGFNIVTS 255
           KTGYTR +G+ + +S
Sbjct: 220 KTGYTRQAGYCLASS 234


>gi|228975468|ref|ZP_04136023.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228784262|gb|EEM32286.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 441

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 118/245 (48%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 71  DELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 130

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
            ++   +++  SAN  S A  E ++ SEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 131 VKELYHSIVIFSANGSSIALAELLAESEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 190

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD  IL  ++   +P+        K R+RN    NH K + +
Sbjct: 191 KGKHPEGTDPNAENSMSARDMGILSKVMITKYPE---MLEDTKQRFRN-FPDNHPKPI-R 245

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    + +  D  +++V++   +  ER  +
Sbjct: 246 MENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMDERFTE 305

Query: 280 ALELI 284
           + ELI
Sbjct: 306 SRELI 310


>gi|295101852|emb|CBK99397.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
           L2-6]
          Length = 319

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 107/252 (42%), Gaps = 21/252 (8%)

Query: 50  AKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A P+ S  + D +  + +     D PR  ASLTKMMT  ++ E      L     IP S 
Sbjct: 38  AYPQESIYLFDADTGEALVEQNPDLPRCVASLTKMMTALLVLE--SGTDLSAGITIPASL 95

Query: 109 TAATQN-----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           T   Q+        + L+          + A++  SAND ++      SGS   FA  M+
Sbjct: 96  TPELQSIRANRGHTIGLQAGETVRRIDMMYAMLLPSANDAASVLAVDTSGSLAAFAAQMN 155

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR----- 218
            +A ++G   T +    GL+D    +TARD A + +    + P Y +      ++     
Sbjct: 156 VRASQLGCTATHFTCPHGLYDGGNYSTARDMAKIALACYAD-PTYRQIADTMSYKLPATN 214

Query: 219 -YRNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            +  R +T  NKLL         +  G+KTG+T  +G   VT  +        V++G   
Sbjct: 215 VHPARTVTTTNKLLQPGSGYYRSDAHGMKTGFTTQAGRCFVTFAQQDGHTYGLVILG-SN 273

Query: 273 SQERDQKALELI 284
           SQ   ++A EL 
Sbjct: 274 SQNIFREAAELF 285


>gi|125973746|ref|YP_001037656.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           ATCC 27405]
 gi|256005750|ref|ZP_05430704.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           thermocellum DSM 2360]
 gi|281417903|ref|ZP_06248923.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           thermocellum JW20]
 gi|125713971|gb|ABN52463.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           ATCC 27405]
 gi|255990284|gb|EEU00412.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           thermocellum DSM 2360]
 gi|281409305|gb|EFB39563.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           thermocellum JW20]
 gi|316940059|gb|ADU74093.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           thermocellum DSM 1313]
          Length = 432

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 114/242 (47%), Gaps = 37/242 (15%)

Query: 57  IVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-N 114
           I+ID    Q+      + R YPAS TK+MT  +  E        LN  + VS++A     
Sbjct: 34  ILIDSKTGQVLAEHNPDLRTYPASTTKIMTAILALELGD-----LNQIMTVSQSAIDDIG 88

Query: 115 PSKLYLKEKTYFTTEQGIL-----ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P  +++        EQ  L     AL+ RSAN+ +    E +  S ++F  LM+ KA+++
Sbjct: 89  PGGMHIG---LLPGEQLELRYLLDALLVRSANETAYVIAENLCSSREEFYRLMNEKAREL 145

Query: 170 GMQNTIYKNASGLHD----KNQITTARDQAILGILLRKNFPQYYKYF--SIRKFRYRNR- 222
           G  NT + N  G+ +    KN +TTARD A +        P++ +    +I K    N+ 
Sbjct: 146 GATNTNFVNPCGIDNGEKGKNHLTTARDLAKIA-QYAMTIPEFREIVQKTIIKIPPTNKH 204

Query: 223 ----IITNHNKLL---------NKMHNIDGIKTGYTRNSGFNIVTS-LRYKDDPIVAVVM 268
               I+   NKLL              I GIKTGYT  +  N+V+S +  +   ++AVV+
Sbjct: 205 AEEVIVGTTNKLLLYSNSKYKSEHYTKITGIKTGYTDRALNNLVSSAVNDEGTELIAVVL 264

Query: 269 GM 270
           G+
Sbjct: 265 GV 266


>gi|229136205|ref|ZP_04264956.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
 gi|228647258|gb|EEL03342.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
          Length = 425

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 116/245 (47%), Gaps = 37/245 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 55  DELLAIASMSKLIVIYAVLEAIKEGKITWDTKVTISDYAYEVSRNNEFSNVPFEKGRQYT 114

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 115 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 174

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD  IL  ++   +P+        K R+RN    NH K + +
Sbjct: 175 KGKHPEGTDPNGENSMSARDMGILSKIIITKYPE---MLEDTKQRFRN-FPDNHPKPI-R 229

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    +    D  +++V++   +  ER  +
Sbjct: 230 MENWNWMLPGAAFAYEGADGLKTGSSDTAGYGFTITATRGDLRLISVIIKTKSMDERFTE 289

Query: 280 ALELI 284
           +  LI
Sbjct: 290 SRALI 294


>gi|217966043|ref|YP_002351721.1| D-alanyl-D-alanine carboxypeptidase DacA (DD-peptidase)
           (DD-carboxypeptidase) (CPase) (Penicillin-binding
           protein5) (PBP-5) [Listeria monocytogenes HCC23]
 gi|217335313|gb|ACK41107.1| D-alanyl-D-alanine carboxypeptidase DacA (DD-peptidase)
           (DD-carboxypeptidase) (CPase) (Penicillin-binding
           protein5) (PBP-5) [Listeria monocytogenes HCC23]
          Length = 445

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 106/218 (48%), Gaps = 28/218 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPS--KLYLKEKTYFTTEQGIL 133
           AS+TKMM  Y++ E +   ++  + ++ +S+ A   +Q+ S   + L+    +T ++   
Sbjct: 65  ASMTKMMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYE 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           A+   SAN  + A  E I+GSEK+F   M+ KA+++ +    + N++GL+          
Sbjct: 125 AMAIYSANGAAIAISEKIAGSEKEFVDAMNKKAEELKLGEHQFVNSTGLNNEDLKGGQQV 184

Query: 184 ----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM 234
               D+N++ TAR  A L   L  ++P   K  S  K  +R        +TN N LL  +
Sbjct: 185 GGPKDENKM-TARGMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGL 243

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 +DG+KTG T  +G  +  +       ++ VV+
Sbjct: 244 IYGRQGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVL 281


>gi|307572345|emb|CAR85524.1| dacA [Listeria monocytogenes L99]
          Length = 433

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 106/218 (48%), Gaps = 28/218 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPS--KLYLKEKTYFTTEQGIL 133
           AS+TKMM  Y++ E +   ++  + ++ +S+ A   +Q+ S   + L+    +T ++   
Sbjct: 53  ASMTKMMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYE 112

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           A+   SAN  + A  E I+GSEK+F   M+ KA+++ +    + N++GL+          
Sbjct: 113 AMAIYSANGAAIAISEKIAGSEKEFVDAMNKKAEELKLGEHQFVNSTGLNNEDLKGGQQV 172

Query: 184 ----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM 234
               D+N++ TAR  A L   L  ++P   K  S  K  +R        +TN N LL  +
Sbjct: 173 GGPKDENKM-TARGMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGL 231

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 +DG+KTG T  +G  +  +       ++ VV+
Sbjct: 232 IYGRQGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVL 269


>gi|290891934|ref|ZP_06554931.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           J2-071]
 gi|290558528|gb|EFD92045.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           J2-071]
          Length = 433

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 106/218 (48%), Gaps = 28/218 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPS--KLYLKEKTYFTTEQGIL 133
           AS+TKMM  Y++ E +   ++  + ++ +S+ A   +Q+ S   + L+    +T ++   
Sbjct: 53  ASMTKMMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYE 112

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           A+   SAN  + A  E I+GSEK+F   M+ KA+++ +    + N++GL+          
Sbjct: 113 AMAIYSANGAAIAISEKIAGSEKEFVDAMNKKAEELKLGEHQFVNSTGLNNEDLKGGQQV 172

Query: 184 ----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM 234
               D+N++ TAR  A L   L  ++P   K  S  K  +R        +TN N LL  +
Sbjct: 173 GGPKDENKM-TARGMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGL 231

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 +DG+KTG T  +G  +  +       ++ VV+
Sbjct: 232 IYGRQGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVL 269


>gi|255022591|ref|ZP_05294577.1| D-alanyl-D-alanine carboxypeptidase DacA (DD-peptidase)
           (DD-carboxypeptidase) (CPase) (Penicillin-binding
           protein [Listeria monocytogenes FSL J1-208]
          Length = 433

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 106/218 (48%), Gaps = 28/218 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPS--KLYLKEKTYFTTEQGIL 133
           AS+TKMM  Y++ E +   ++  + ++ +S+ A   +Q+ S   + L+    +T ++   
Sbjct: 53  ASMTKMMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYE 112

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           A+   SAN  + A  E I+GSEK+F   M+ KA+++ +    + N++GL+          
Sbjct: 113 AMAIYSANGAAIAISEKIAGSEKEFVDAMNKKAEELKLGEHQFVNSTGLNNEDLKGGQQV 172

Query: 184 ----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM 234
               D+N++ TAR  A L   L  ++P   K  S  K  +R        +TN N LL  +
Sbjct: 173 GGPKDENKM-TARGMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGL 231

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 +DG+KTG T  +G  +  +       ++ VV+
Sbjct: 232 IYGRQGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVL 269


>gi|260551083|ref|ZP_05825287.1| D-alanyl-D-alanine endopeptidase [Acinetobacter sp. RUH2624]
 gi|260405850|gb|EEW99338.1| D-alanyl-D-alanine endopeptidase [Acinetobacter sp. RUH2624]
          Length = 348

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 113/254 (44%), Gaps = 30/254 (11%)

Query: 49  HAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +A+P  S+   +V+D    ++   K      P AS+TK+MT  +  +     +L+++ +I
Sbjct: 97  NAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKLMTAVVTAD----ARLNMSEEI 152

Query: 105 PVSK---TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
            + +     A    S   L+        + +L  + +S N  + A      G    F   
Sbjct: 153 TLEQIDFAGANGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRPAFVAA 212

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR--- 218
           M+ KA+ +GM  T Y  ++GL  +N +++ARD   LGIL         +Y  IR+F    
Sbjct: 213 MNAKARSLGMNATHYYESTGLDPRN-VSSARD---LGILAST----ASQYGLIRQFSTTP 264

Query: 219 -------YRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
                  YR     N N L+ N   NI+  KTGY   +G  +V        P V V++G 
Sbjct: 265 TYDFNLGYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGE 324

Query: 271 PTSQERDQKALELI 284
           P++Q R+  A  L+
Sbjct: 325 PSTQARNNDATNLL 338


>gi|229016624|ref|ZP_04173563.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273]
 gi|229022835|ref|ZP_04179357.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272]
 gi|228738470|gb|EEL88944.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272]
 gi|228744711|gb|EEL94774.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273]
          Length = 407

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 125/258 (48%), Gaps = 24/258 (9%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 52  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 106

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ KAK++G +++ +   +GLHD N  TT  D
Sbjct: 107 ILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSHFVTPNGLHDPNHYTTPYD 166

Query: 194 QAILGILLRKNFPQYYKYFS----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  +          +   I N +      +++ G KTG+T N  
Sbjct: 167 MAMITRGVQK-YPEILQAMNTKRTTVTTSTQTVSIFNKSTYFENPYSMGG-KTGFT-NEA 223

Query: 250 FNIVTSLRYKD-DPIVAVVMG--MPTSQERDQKALELITSFLEKKTL-----KHQQTHRK 301
            N +  L  KD + I+ VVM    P   E  ++  E       K+T+      HQ+T   
Sbjct: 224 RNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMAEYSFGQFTKQTVLDKHSWHQKTTYL 283

Query: 302 DNLSSTSLKKS--LMIKK 317
           +    + L+KS  LM+KK
Sbjct: 284 NKDVDSELEKSAELMLKK 301


>gi|258622600|ref|ZP_05717622.1| D-alanyl-D-alanine endopeptidase [Vibrio mimicus VM573]
 gi|258585300|gb|EEW10027.1| D-alanyl-D-alanine endopeptidase [Vibrio mimicus VM573]
          Length = 317

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 102/214 (47%), Gaps = 27/214 (12%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAAT 112
           S++VID+  N++      D  R  AS+TK+MT  +  +     KL ++T++P++ K A  
Sbjct: 50  SALVIDLKTNEVIYSSNPDAVRPIASVTKLMTAIVTLD----AKLPMDTKLPITIKEAKE 105

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  ++  +  + +  +L  +  S N  + +      G  K F   M+NKAK +GM+
Sbjct: 106 MKGIHSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNNKAKALGMK 165

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-------------FRY 219
           NT +   +GL +KN +++ARD  +L +   K +P   +  +  K             FR 
Sbjct: 166 NTRFVEPTGLSEKN-VSSARDLVLL-LKASKKYPMLGQLSATEKKTVTFAKPRYSLDFRN 223

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            NR++ N N        ID  KTG+T  +G  +V
Sbjct: 224 TNRLVFNDN------WKIDLTKTGFTNAAGHCLV 251


>gi|206977836|ref|ZP_03238725.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           H3081.97]
 gi|206743933|gb|EDZ55351.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           H3081.97]
          Length = 428

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 73  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 127

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GLHD N  TT  D
Sbjct: 128 ILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYD 187

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +       +I G KTG+T N  
Sbjct: 188 MAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSIYFENPFSIGG-KTGFT-NEA 244

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 245 RNTLVLLNEKDGNRIINVVMA 265


>gi|257869614|ref|ZP_05649267.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus gallinarum EG2]
 gi|257803778|gb|EEV32600.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus gallinarum EG2]
          Length = 444

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 103/223 (46%), Gaps = 29/223 (13%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTE 129
           P   AS+TK+++LY++ E ++  KL     I +S+ A+    T + S + L     +T +
Sbjct: 69  PMGIASVTKIISLYLVAEQVKEGKLTWEDPIEISQYASDLSVTPDLSNVPLHRDVQYTVK 128

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH------ 183
               A   +SAN    A  E I+GSE  F   M +K  + G+ +    NASGL+      
Sbjct: 129 DLYEASYIQSANAAVVALAEKIAGSEPAFVDQMKDKLTEWGITDAKIVNASGLNNTYLGE 188

Query: 184 ---------DKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNK 229
                    D+N++ +A+D AI+   L ++FP+  +  S       +  Y    + N N 
Sbjct: 189 NLYPGSTSTDENEL-SAKDVAIVARHLLQDFPEVLEVTSTVTKTFGEGSYSPVEMVNWNW 247

Query: 230 LL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +L    N    +DG+KTG T  +G   V +       I+ VV+
Sbjct: 248 MLPGFINAKDGVDGLKTGTTDLAGACFVGTAVRDGQRIITVVL 290


>gi|299771873|ref|YP_003733899.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter sp. DR1]
 gi|298701961|gb|ADI92526.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter sp. DR1]
          Length = 335

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 115/256 (44%), Gaps = 28/256 (10%)

Query: 46  SELHAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYL--QSKKLH 99
           S  +A+P  S+   +V+D    ++   K      P AS+TK+MT  +  +     S+++ 
Sbjct: 81  SGYNAQPSVSARAALVMDAQTGEVLFSKNTNASVPIASITKLMTAVVTADARLNMSEEIM 140

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           L  QI  +      + S L + +K      + +L  + +S N  + A      G    F 
Sbjct: 141 LE-QIDFAGANGKNSSSTLRVGDK--MNRAEVLLFALMKSENPAAAALARTYPGGRPAFV 197

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR- 218
             M+ KA+ +GM  T Y  ++GL  +N +++ARD   LGIL         +Y  IR+F  
Sbjct: 198 AAMNAKARALGMNATHYYESTGLDPRN-VSSARD---LGILAST----ASQYGLIRQFST 249

Query: 219 ---------YRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                    YR     N N L+ N   NI+  KTGY   +G  +V        P V V++
Sbjct: 250 TPTYDFNLGYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLL 309

Query: 269 GMPTSQERDQKALELI 284
           G P++Q R+  A  L+
Sbjct: 310 GEPSTQARNNDATNLL 325


>gi|217958851|ref|YP_002337399.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH187]
 gi|217065525|gb|ACJ79775.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH187]
          Length = 428

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 73  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 127

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GLHD N  TT  D
Sbjct: 128 ILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYD 187

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +       +I G KTG+T N  
Sbjct: 188 MAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSIYFENPFSIGG-KTGFT-NEA 244

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 245 RNTLVLLNEKDGNRIINVVMA 265


>gi|258625555|ref|ZP_05720443.1| D-alanyl-D-alanine endopeptidase [Vibrio mimicus VM603]
 gi|258582148|gb|EEW07009.1| D-alanyl-D-alanine endopeptidase [Vibrio mimicus VM603]
          Length = 317

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 102/214 (47%), Gaps = 27/214 (12%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAAT 112
           S++VID+  N++      D  R  AS+TK+MT  +  +     KL ++T++P++ K A  
Sbjct: 50  SALVIDLKTNEVIYSSNPDAVRPIASVTKLMTAIVTLD----AKLPMDTKLPITIKEAKE 105

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  ++  +  + +  +L  +  S N  + +      G  K F   M+NKAK +GM+
Sbjct: 106 MKGIHSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNNKAKALGMK 165

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-------------FRY 219
           NT +   +GL +KN +++ARD  +L +   K +P   +  +  K             FR 
Sbjct: 166 NTRFVEPTGLSEKN-VSSARDLVLL-LKASKKYPMLGQLSATEKKTVTFAKPRYSLDFRN 223

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            NR++ N N        ID  KTG+T  +G  +V
Sbjct: 224 TNRLVFNDN------WKIDLTKTGFTNAAGHCLV 251


>gi|229138063|ref|ZP_04266661.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
 gi|228645408|gb|EEL01642.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
          Length = 407

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++  +          ++
Sbjct: 52  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFQPGETINRNTALM 106

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GLHD N  TT  D
Sbjct: 107 ILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYD 166

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY---RNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  + ++      R  + I N +       +I G KTG+T N  
Sbjct: 167 MAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSIYFENPFSIGG-KTGFT-NEA 223

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 224 RNTLVLLNEKDGNRIINVVMA 244


>gi|254383787|ref|ZP_04999135.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. Mg1]
 gi|194342680|gb|EDX23646.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. Mg1]
          Length = 443

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 97/202 (48%), Gaps = 28/202 (13%)

Query: 69  FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           F + +P    S+ K MT Y+I +    KK      I V K AA ++  K    E T  T 
Sbjct: 111 FGEQKPVAIGSVAKAMTAYVILKGHPLKKGEKGAMIDVDK-AAVEDGKKESEGESTVNTL 169

Query: 129 EQG--------ILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNA 179
           ++G        + A++  SAN+V+     + +G +++ F   M++ AK++GM NT Y + 
Sbjct: 170 KEGGQISEYDALAAIMIPSANNVARLLARWDAGGDQEAFVKKMNDAAKELGMTNTTYTDP 229

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQY--------YKYFSIRKFRYRNRIITNHNKLL 231
           SGL D   ++TA DQ  LG+ + +  P+         +   S + +R  N +I  +  L 
Sbjct: 230 SGL-DATTVSTAEDQVKLGLKIVE-MPELIAITRLPNWTDASGKSWRNYNDLIPFNGSL- 286

Query: 232 NKMHNIDGIKTGYTRNSGFNIV 253
                  GIKTG T  +G N++
Sbjct: 287 -------GIKTGSTTKAGGNLL 301


>gi|309774606|ref|ZP_07669631.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308917637|gb|EFP63352.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 336

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 98/226 (43%), Gaps = 30/226 (13%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS--KTAAT 112
           ++VID+   Q+   K  D+  +PASLTK++T  +  +   ++ LH    I     K  A 
Sbjct: 72  AMVIDLKDQQVLYEKNSDKKLFPASLTKVLTAIVALD--NAEDLHKKITITDKDIKGLAE 129

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
            N S   L      T E  + ALI  S  D + A    ++GS   F   M++KA  +GM 
Sbjct: 130 ANASVAGLAVGEQVTIEDLLYALILPSGADGANALANHLNGSVPNFVKDMNSKADGMGMT 189

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIITNH- 227
           +T + N +GLHDK   TT +D       ++K     +K  + RK     RY       H 
Sbjct: 190 HTHFTNTTGLHDKQHYTTLQD-------MKKMMDHAWKNPAFRKVMTTLRYSLPATKQHP 242

Query: 228 -------------NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
                        N L      I G K+GYT  +G+ +++    KD
Sbjct: 243 KGLKLNSTLLFYDNDLKFDGGRIIGGKSGYTPEAGYCLISVAEMKD 288


>gi|290959626|ref|YP_003490808.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei 87.22]
 gi|260649152|emb|CBG72266.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei
           87.22]
          Length = 1000

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 99/215 (46%), Gaps = 33/215 (15%)

Query: 59  IDVNK-NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           +DVN    M  F + +P    S+ K MT Y+I +    K       I V     T+    
Sbjct: 657 MDVNGIGTMDSFGEQKPVAIGSVAKAMTAYVILKDHPMKPGEKGKTITVDAKGETEG--- 713

Query: 118 LYLK--EKTYFTTEQG--------ILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKA 166
            Y K  E T  T ++G        I A++  SAN+++     + S GSEK F   M+  A
Sbjct: 714 GYDKDGESTLNTVKEGDELSQYDAIAAIMIPSANNIARLLARWDSKGSEKAFVKKMNAAA 773

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILG-ILLR-------KNFPQYYKYFSIRKFR 218
           K +GM+NT Y + SGL  +  ++TA DQ  LG  L+R          P +    S +K+ 
Sbjct: 774 KDLGMKNTTYTDPSGLK-ETTVSTAEDQVKLGNALVRMKALTDITKLPTWVDP-SGKKWD 831

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
             NR++  +N +        GIKTG T  +G N++
Sbjct: 832 NYNRLVPYNNAI--------GIKTGSTTAAGGNLL 858


>gi|145490887|ref|XP_001431443.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398548|emb|CAK64045.1| unnamed protein product [Paramecium tetraurelia]
          Length = 302

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 121/273 (44%), Gaps = 31/273 (11%)

Query: 45  ASELHAKPKY---SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           A E +  P+    S I++D      +  F +++ R  AS+TK+MT Y++    ++  +  
Sbjct: 32  ADEKNLAPRITAKSWIIVDSQSGDVLYSFNENQKREIASITKIMTFYVVLNMCRTMNVQT 91

Query: 101 N-TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF--------- 150
           N T   VS  A++   +   L +    + E     L+  S ND + A  E          
Sbjct: 92  NNTYAEVSFQASSVGGTTADLLKGDVVSIEDLFYGLMLPSGNDAAMALAENFGIYAMYQN 151

Query: 151 -ISGSEK--KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            I G      F   M+NKA+++ M  T Y N  GL++KN +++A D A L   L K+  +
Sbjct: 152 KIKGKNPLIYFIQEMNNKARELRMSQTTYANPHGLNNKNNVSSAYDVAKLCNQLLKD--E 209

Query: 208 YYKYFSIRKFRY----------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
           +++     K  +          R+ I  N NKLL       GIKTG T  +G  + +  +
Sbjct: 210 FFRKVVNTKVHFSTIQDEEGFTRDVIWENTNKLL--YQGFKGIKTGNTSVAGPCLASYYQ 267

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
             +     V++G    ++R  + ++L+   L +
Sbjct: 268 TANRSFTIVILGCRNQEDRWSETMQLLQWCLSQ 300


>gi|229132169|ref|ZP_04261027.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
 gi|228651316|gb|EEL07293.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
          Length = 407

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++             ++
Sbjct: 52  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFHPGETINRNTALM 106

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G +++ +   +GLHD N  TT  D
Sbjct: 107 ILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGAKDSHFVTPNGLHDPNHYTTPYD 166

Query: 194 QAILGILLRKNFPQYYKYFS----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  +          +   I N +      ++I G KTG+T N  
Sbjct: 167 MAMITRGVQK-YPEILQAMNTKRTTVTTSTQTVSIFNKSTYFENPYSIGG-KTGFT-NEA 223

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 224 RNTLVLLNEKDGNRIINVVMA 244


>gi|160880498|ref|YP_001559466.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           phytofermentans ISDg]
 gi|160429164|gb|ABX42727.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           phytofermentans ISDg]
          Length = 342

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 84/187 (44%), Gaps = 10/187 (5%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A P  ++ +ID   +Q+   K    R YPAS TK++T  I+ +Y   K    +  I    
Sbjct: 91  AIPAIAAFMIDDTDHQVLFAKNVYDRIYPASTTKLLTALIVLKYGDLKD---SVTIEKDN 147

Query: 109 TAATQNPSKLY-LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
              T   +KL   K     + E  +  L+  S ND + A  E + GS ++F   M+ +A 
Sbjct: 148 AGVTTYGAKLCNFKAGDVVSMETLLNCLLVYSGNDAAVAIAEHMYGSVEEFVKKMNEEAA 207

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-IRKFRYRNRIITN 226
            IG  NT + N  GLHD N  TTA D      L+ K   +Y K+   I++  Y   I   
Sbjct: 208 NIGATNTHFTNPHGLHDPNHYTTAYDM----YLIFKECLKYEKFVPIIKQINYEASITDK 263

Query: 227 HNKLLNK 233
             KL  K
Sbjct: 264 DGKLRRK 270


>gi|169634636|ref|YP_001708372.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter baumannii
           SDF]
 gi|169153428|emb|CAP02565.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter baumannii]
          Length = 348

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 113/253 (44%), Gaps = 28/253 (11%)

Query: 49  HAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYL--QSKKLHLNT 102
           +A+P  S+   +V+D    ++   K      P AS+TK+MT  +  +     S+++ L  
Sbjct: 97  NAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKLMTAVVTADARLNMSEEITLE- 155

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           QI  +      + S L + +K      + +L  + +S N  + A      G    F   M
Sbjct: 156 QIDFAGAGGKNSSSTLRVGDK--MNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAAM 213

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR---- 218
           + KA  +GM  T Y  ++GL  +N +++ARD   LGIL         +Y  IR+F     
Sbjct: 214 NAKAHALGMNATHYYESTGLDPRN-VSSARD---LGILAST----ASQYGLIRQFSTTPT 265

Query: 219 ------YRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
                 YR     N N L+ N   NI+  KTGY   +G  +V        P V V++G P
Sbjct: 266 YDFNLGYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEP 325

Query: 272 TSQERDQKALELI 284
           ++Q R+  A  L+
Sbjct: 326 STQARNNDATNLL 338


>gi|320101740|ref|YP_004177331.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Isosphaera
           pallida ATCC 43644]
 gi|319749022|gb|ADV60782.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Isosphaera
           pallida ATCC 43644]
          Length = 702

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 112/244 (45%), Gaps = 28/244 (11%)

Query: 57  IVIDVNKNQMTGFKQDEPRYP---ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           + ID +  ++ G +  EP  P   AS TK+MT +++ + L +     +  +  S  AA  
Sbjct: 437 VAIDADTGRVLGGR--EPERPLDMASTTKIMTAHLVLKELAAHPEARDEVVTFSARAAAT 494

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTA----FGEFIS---GSE-----KKFAIL 161
             S   ++E       + +  L+  S ND + A    FG+ ++   GS+     + F   
Sbjct: 495 PGSSSEVREGERVRVGELLYGLMLPSGNDAAVALAEQFGQRLAARDGSDGLDPLEAFVAA 554

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----- 216
           M+ +A+ +G+  T + N  GL   N   +A D A L  +  +N P++    + R+     
Sbjct: 555 MNREAQALGLSATRFVNPHGLTAPNHQASALDLARLTRVALEN-PEFAALVATRRRAARL 613

Query: 217 ----FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
                + R  + +N N+LL K+    G+KTG T ++G  +V   +  +  ++ VV+G   
Sbjct: 614 IDGEGKGRTIVWSNTNELL-KIEGFAGVKTGTTSSAGACLVALGQQGERRVIVVVLGSAA 672

Query: 273 SQER 276
           S  R
Sbjct: 673 SASR 676


>gi|332530569|ref|ZP_08406506.1| murein-DD-endopeptidase [Hylemonella gracilis ATCC 19624]
 gi|332039975|gb|EGI76364.1| murein-DD-endopeptidase [Hylemonella gracilis ATCC 19624]
          Length = 346

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 13/203 (6%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQNP 115
           VID +  ++   K +E   P ASLTK+MT  +I E     +L L+  I +++    T+  
Sbjct: 97  VIDQDTQEVLFSKNEEAVLPIASLTKLMTTLLISE----AELPLDEPITITQDDVDTEKY 152

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S   L+  T  T  + +   +  S N  + A G    G    F  +M+ KA+ +GMQ+T 
Sbjct: 153 SVSRLRVGTVLTRGELLHLALMASENRAANALGRTYPGGLSIFVTMMNAKAQLLGMQDTR 212

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNKL- 230
           Y   +GL  +NQ ++ARD A+L +      P   ++ + R ++     R  +  N N+L 
Sbjct: 213 YVEPTGLSSRNQ-SSARDLALL-VDAASADPMLREFSTTRAYQVAVGQRKMVFANTNRLV 270

Query: 231 LNKMHNIDGIKTGYTRNSGFNIV 253
           LN+  +I   KTGY   +G  +V
Sbjct: 271 LNQRWDIGLQKTGYISEAGQCLV 293


>gi|168180431|ref|ZP_02615095.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum NCTC
           2916]
 gi|182668648|gb|EDT80626.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum NCTC
           2916]
          Length = 378

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 99/195 (50%), Gaps = 10/195 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK+MT  +  +Y       L+ +I +S+ A     S +  ++    T  + +  L+ 
Sbjct: 68  ASTTKIMTTLVALKYGD-----LDRKIEISENADKIRGSVVGYRKGEKITLRELLYGLML 122

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           RS ND + A  E I+GS + F+ LM+  A +IG+ N+ +    GL      +TA D A L
Sbjct: 123 RSGNDAAIAIAEGIAGSIEGFSKLMNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLA-L 181

Query: 198 GILLRKNFPQYYKYFS---IRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
                K +  + K  S   ++K  Y   R   N NK+L K+   DG+KTGYT  +G  +V
Sbjct: 182 ATATAKKYELFNKIVSSKDVKKEEYNFTRDYQNINKILWKIPEADGVKTGYTGKAGKCLV 241

Query: 254 TSLRYKDDPIVAVVM 268
           TS +  D+ I+ VV+
Sbjct: 242 TSSKINDNDIIIVVL 256


>gi|111220633|ref|YP_711427.1| putative D-alanyl-D-alanine carboxypeptidase [Frankia alni ACN14a]
 gi|111148165|emb|CAJ59835.1| Putative D-alanyl-D-alanine carboxypeptidase (partial match)
           [Frankia alni ACN14a]
          Length = 541

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 12/187 (6%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           P  PAS  K++T   +   L   ++     I V + A   + +K+ L     +T      
Sbjct: 103 PDLPASTMKILTALTVLPGLPPDRV-----ITVDENAPRVDGTKVGLVPGVGYTVRDLAT 157

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           A++  S ND + A  E   G+    A  M+  A+ +G + T+  + +GL    Q+T+  D
Sbjct: 158 AMMISSGNDATVALVEAAGGTAAVLA-RMNALARSLGTRETVAGDPTGLDSPGQVTSVYD 216

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKMHNIDGIKTGYTRNS 248
            A+LG     N P    Y +I +     R      I NHN LL       G+K GYT  +
Sbjct: 217 LAVLG-RAALNDPSVRGYLTIPRASLAGRGDQRFEIQNHNALLRTYDGAVGVKNGYTVAA 275

Query: 249 GFNIVTS 255
           G   V +
Sbjct: 276 GATFVGA 282


>gi|323694964|ref|ZP_08109114.1| hypothetical protein HMPREF9475_03978 [Clostridium symbiosum
           WAL-14673]
 gi|323501054|gb|EGB16966.1| hypothetical protein HMPREF9475_03978 [Clostridium symbiosum
           WAL-14673]
          Length = 529

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 117/244 (47%), Gaps = 23/244 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-- 111
           + I++D N   +   K     Y PAS+TK++T  I+ E     +  ++  +  S+ A   
Sbjct: 39  AGIIMDANSGAVIYGKNIHATYAPASITKVLTALIVLE-----RCSMDETVTFSQNAVYN 93

Query: 112 -TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
              N S          + +  + AL+ +SAN+ + A  E ISG+ ++FA+LM+ KA ++G
Sbjct: 94  VESNSSSAGYDTGDTASVKDCLYALLLKSANEAANALAEHISGTTEEFAVLMNEKAAELG 153

Query: 171 MQNTIYKNASGLHDKNQITTARDQAIL--GILLRKNFPQ-----YYKYFSIRKFRYRNRI 223
            Q++ + N SGL+D+N   +A D A++        +F +     YY+     K     + 
Sbjct: 154 CQDSHFSNPSGLNDENHYVSAYDMALITKAAFENADFSKIVATTYYE-LPPNKKNPEGQG 212

Query: 224 ITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           I+  NK++ K        ++ G KTGYT  +   +V   +  D   V V++    +Q  D
Sbjct: 213 ISPGNKMIKKNWPDQYRPDVIGGKTGYTSIALNTLVIGAQQGDTKFVTVILHSSGTQYSD 272

Query: 278 QKAL 281
            KAL
Sbjct: 273 TKAL 276


>gi|257064043|ref|YP_003143715.1| D-alanyl-D-alanine carboxypeptidase [Slackia heliotrinireducens DSM
           20476]
 gi|256791696|gb|ACV22366.1| D-alanyl-D-alanine carboxypeptidase [Slackia heliotrinireducens DSM
           20476]
          Length = 464

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 95/224 (42%), Gaps = 35/224 (15%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MT  +  E        LNT++ VSK +AT   S   LKE         ++ L+ 
Sbjct: 102 ASITKIMTAIVALE-----NADLNTEVTVSKASATVGESSANLKEGDTMDLRTALMCLLI 156

Query: 138 RSANDVSTAFGEFI--------SGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DK--- 185
            S ND   A  E +        S  +  F   M+ KA+++G  NT + N  GL  DK   
Sbjct: 157 PSGNDAGIAIAETVGTIMDPSASDPQAVFVSAMNAKAEELGCTNTHFTNPHGLDADKWGS 216

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFS-------------IRKFRYRNRIITNHNKLLN 232
           +  ++ARD     ++    +   Y  F+              +  + R+  +   + LL 
Sbjct: 217 DMHSSARD-----VVTMARYAMSYDTFAEIVQMGDTTVTVTGKDNKARDNWLDATDDLLE 271

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           +   + G+KTG +  + F     +   D+    VV+G  TS ER
Sbjct: 272 EYEGMRGVKTGSSVLADFCFSGCVTRGDETFYTVVLGNATSDER 315


>gi|313890311|ref|ZP_07823943.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121297|gb|EFR44404.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 404

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 113/228 (49%), Gaps = 30/228 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA--TQNPS----KLYLKEKTYFTTEQG 131
           ASLTK+MT+Y+  + + S +L  +  + +SK A     NP      LY   K  ++ ++ 
Sbjct: 58  ASLTKIMTIYLTLKEINSGRLKWDDSVEMSKYATDLANNPDISNPPLY---KNSYSVKEL 114

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------- 184
           + + +  S+N  + A  E ISGSE KF   M ++ K  G+ +    NASGL++       
Sbjct: 115 VDSSMVVSSNSSAIALAEKISGSEAKFVDKMKDQLKTWGITDYQLVNASGLNNSMLNGHI 174

Query: 185 --------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL--NKM 234
                   +N++ +A+  AI+   L K+FP+     S  +  + N I+TN N LL  N M
Sbjct: 175 YPGSSKTSENRL-SAKSLAIVSRHLIKDFPEILTISSQNQIYWGNDILTNSNHLLPGNTM 233

Query: 235 --HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
             + +DG+KTG T  +G   + +   +D   V VV+   T   +D  A
Sbjct: 234 ARNGVDGLKTGTTTKAGQTYIGT-AVQDKMRVIVVILNATDAPKDSNA 280


>gi|268610236|ref|ZP_06143963.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus flavefaciens
           FD-1]
          Length = 386

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 94/199 (47%), Gaps = 16/199 (8%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK+MT  +    L+S  L+   +  V   A     S + L E    T     + ++ 
Sbjct: 59  ASTTKIMTTLLC---LESGDLY--DEFVVDSDAIHVEGSSMGLVEGDTVTKYALCVGMLL 113

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND + A    ++GS + FA++M++KAK++G+ +T +   SGL      ++A D A+L
Sbjct: 114 PSGNDAANACAVKLAGSLENFAVMMNDKAKELGLSHTYFVTPSGLEGDGHGSSAYDMAML 173

Query: 198 GILLRKN--FPQYYKY------FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
                +N  F +          F    ++   R + N NKLL+    + G+KTG+T  +G
Sbjct: 174 AREALRNEIFREICSSENMEIEFGAPPYK---RWLKNTNKLLSMYDGVYGVKTGFTDEAG 230

Query: 250 FNIVTSLRYKDDPIVAVVM 268
             +V++       ++ V +
Sbjct: 231 RCLVSACERDGKDLICVTL 249


>gi|296269600|ref|YP_003652232.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thermobispora
           bispora DSM 43833]
 gi|296092387|gb|ADG88339.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thermobispora
           bispora DSM 43833]
          Length = 307

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 112/256 (43%), Gaps = 21/256 (8%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI- 104
           E++A+  Y   ++D    +    K    R P ASLTK+MT Y++   L+  KL     I 
Sbjct: 56  EVYARAAY---LLDAATGEELYGKAGTERMPVASLTKVMTAYLV---LRQAKLTDTVVID 109

Query: 105 PVS-KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           P   + A     +   L+     T E  + AL+  S  D + A         + F   M+
Sbjct: 110 PADVRYANAGGGTTAGLRAGDRLTVEDLLYALMLPSGADAAHALARVYGPGVEAFTKRMN 169

Query: 164 NKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILG-ILLRKNFPQYYKYFSI------ 214
           + A+++G+ +T Y NA GL   +    +TARDQA L  I LR   P+  K  S       
Sbjct: 170 DTARELGLTDTTYLNADGLPTPEGQNTSTARDQARLAEIALRD--PRLKKITSTQVHTVA 227

Query: 215 RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           R   +      N N+LL     I G+KTG+T  +GF +  +       +V V++G   S 
Sbjct: 228 RTADHAAYTWRNTNRLLGAPGVI-GVKTGFTLAAGFCLAFAAERDGRLVVGVILGETVSA 286

Query: 275 ERDQKALELITSFLEK 290
            R   A  L+    E+
Sbjct: 287 RRYTTARALLDWAAER 302


>gi|229065037|ref|ZP_04200334.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
 gi|228716242|gb|EEL67956.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
          Length = 425

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 140/296 (47%), Gaps = 46/296 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFT 127
           DE    AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T
Sbjct: 55  DELLAIASMSKLIVIYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYT 114

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ + 
Sbjct: 115 VRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADL 174

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +ARD   +GIL +    +Y +     K R+RN    NH K + +
Sbjct: 175 KGKHPEGTDPNGENSMSARD---MGILSKTIITKYPEMLEDTKQRFRN-FPDNHPKPI-R 229

Query: 234 MHNI--------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           M N               DG+KTG +  +G+    +    D  +++V++   +  ER  +
Sbjct: 230 MENWNWMLPGAAFAYEGADGLKTGSSDTAGYGFTITATRGDLRLISVIIKTKSMDERFTE 289

Query: 280 ALELIT---SFLEKKTLKHQQTHR------KDNLSSTSLKKSLMIKKLKRTYSQFK 326
           +  LI    +  EK+ LK  + ++      K++  + + +K + +   K + S +K
Sbjct: 290 SRALIEYGFNNFEKQKLKIDKNNKISVVKGKEDYVTVAPEKEVTVVTAKGSKSPYK 345


>gi|291522282|emb|CBK80575.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus catus GD/7]
          Length = 383

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 109/242 (45%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++++D +  ++   K +   +P AS TK+MTL +  E+ +        QI ++   A+ 
Sbjct: 38  AAVLMDADSGRILYGKNETMAFPMASTTKIMTLIVALEHNEPD------QIVMASAGASA 91

Query: 114 NPS-KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
            P  +L + E   +  E    A++  S ND +    E   GS + FA LM+ KA  +G  
Sbjct: 92  MPEVRLGVHEGERYRMEDLYYAMMLESFNDAAMMIAEGTVGSVENFAELMNEKAISLGCT 151

Query: 173 NTIYKNASGLHDKNQ----ITTARDQAILGILLRKN-----FPQYYKYFSIRKFRYRNRI 223
            T +   +GL   ++     +TA D A +      N       Q   Y      R R+  
Sbjct: 152 QTYFITPNGLDAADEKGVHSSTAEDMAKIMRYAIDNEDFLKITQTADYSFTDCDRKRSFE 211

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           + N N LL  M  +   KTGYT ++G+  V +++  D   +A ++G      +  K L++
Sbjct: 212 VHNKNVLLTMMDGVLSGKTGYTADAGYCYVCAVKKDDRTFIAALLGSGWPPHKGYKWLDV 271

Query: 284 IT 285
            T
Sbjct: 272 QT 273


>gi|296268658|ref|YP_003651290.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thermobispora
           bispora DSM 43833]
 gi|296091445|gb|ADG87397.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thermobispora
           bispora DSM 43833]
          Length = 388

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 96/222 (43%), Gaps = 16/222 (7%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D +   +   K     Y PAS  K +T   +   L  K++     +  S  A  +  
Sbjct: 71  LVADADTGDVLAAKDPHGHYRPASTLKALTAITLIPKLDKKRV-----VRPSPEACNEEG 125

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S + L  K  +T E    AL+  S ND + A  E   G  K  A  M+  A+++   +T+
Sbjct: 126 SAVGLVPKPIYTVEDLFRALLMVSGNDAANALAEANGGMRKTLA-EMNQVARRLQAYDTV 184

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYRNR----IITNHNK 229
            K  SGL    Q ++A D   L ++ R     P + +Y S +  ++        I NHN+
Sbjct: 185 AKTPSGLDRPGQRSSAYD---LALIARAGLAMPDFRRYVSTKVAKFPAPKGHYEIANHNR 241

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           LL +   + G+K G+T  +  + V +       I+ V+M  P
Sbjct: 242 LLGRYQGMIGVKNGWTSKALGSFVGAATRNGHTIIVVIMRHP 283


>gi|167760670|ref|ZP_02432797.1| hypothetical protein CLOSCI_03055 [Clostridium scindens ATCC 35704]
 gi|167661557|gb|EDS05687.1| hypothetical protein CLOSCI_03055 [Clostridium scindens ATCC 35704]
          Length = 324

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 19/152 (12%)

Query: 56  SIVIDVNK-NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ-IPVSKTAATQ 113
           SI+ D++  N +      +  YPASLTK+MT  +  E         NTQ +    T  T 
Sbjct: 53  SILTDLDSGNALAEHNAQDRIYPASLTKIMTAILAIE---------NTQDMEEVITLPTD 103

Query: 114 NPSKLYLKEKTYFTTEQG--------ILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
             SKLY++  +    + G        +  ++  S  +   AF E I+GSE+ F  LM+ K
Sbjct: 104 FFSKLYIENASMAGFQPGEQVRLKDLLYGMLLPSGAECCLAFCERIAGSEEAFVRLMNKK 163

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           A ++G++NT + N++GLHD    +T +D + L
Sbjct: 164 AGELGLENTHFCNSTGLHDSEHYSTVKDISAL 195


>gi|167760257|ref|ZP_02432384.1| hypothetical protein CLOSCI_02630 [Clostridium scindens ATCC 35704]
 gi|167662140|gb|EDS06270.1| hypothetical protein CLOSCI_02630 [Clostridium scindens ATCC 35704]
          Length = 475

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 89/166 (53%), Gaps = 18/166 (10%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS---KTA 110
           ++IV++V    +   K  D  +YPAS+TK++T  +  E  Q +        PV+    + 
Sbjct: 91  AAIVMEVGTGAILYAKNIDSHQYPASITKVLTALVAMENGQLED-------PVTFSHDSV 143

Query: 111 ATQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI---SGSE-KKFAILMSN 164
           A   P  S + LKE    + EQ + A +  SAN+ + A GE +   +G +   F   M+ 
Sbjct: 144 AFLKPGDSSVGLKEGNQISLEQALHATLLASANEAAYAVGESVGINAGHDYNWFMEQMNI 203

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           + +++G +N+ + N +GLHD+N  T ARD A++G  L K+ P +++
Sbjct: 204 RCRELGGENSNFANTNGLHDENHYTCARDMALIGRELFKH-PDFFR 248


>gi|150015409|ref|YP_001307663.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901874|gb|ABR32707.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 411

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 14/176 (7%)

Query: 34  ILFLSIIMISMAS-ELHAKP----KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLY 87
           ILFL +   +  S +   +P         +ID +  Q + G  +++   PAS TK+MT  
Sbjct: 10  ILFLFLFCFTYTSVQAETQPPQINAEGCALIDASTGQVLYGKNEEKVLEPASTTKVMTAI 69

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           I  E     K  L+ ++ V +     + + + L +    T    +L L+  S ND + A 
Sbjct: 70  ITLE-----KCKLDDEVTVQEDFTKIDGTAVGLLKGDVVTVRDLLLGLLLESGNDCANAL 124

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
            + ISGS + F+ LM+ KAK++G  +T +KN SGL D    TTA D   L + LR+
Sbjct: 125 ADHISGSTEAFSKLMNEKAKELGALHTNFKNPSGLPDPEHTTTAHD---LALFLRE 177


>gi|295398159|ref|ZP_06808208.1| conserved hypothetical protein [Aerococcus viridans ATCC 11563]
 gi|294973678|gb|EFG49456.1| conserved hypothetical protein [Aerococcus viridans ATCC 11563]
          Length = 469

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 112/243 (46%), Gaps = 30/243 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKT-YFTTEQGI 132
           ASLTK++ L+++++ + +  L  ++++PVS+  +        S + L+E T Y+T +  I
Sbjct: 90  ASLTKLIALFVVYDEIAAGNLSFDSKVPVSEAVSELSVAAGLSNVPLEESTDYYTVDALI 149

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------- 183
            A +  S N    A  E+I+GSE+ F  +M +K  ++G+++     ASGL          
Sbjct: 150 DAAVIGSGNAAVVALAEYIAGSEQSFVEMMDDKLTELGIKDFELYTASGLAGSWLTTTDG 209

Query: 184 -------DKNQITTARDQAILGILLRKNFPQYYKYFSI--RKFRYRNR---IITNHNKLL 231
                  D+  +  ARD   +   +   +P   +  ++  ++F+  +     + + N  L
Sbjct: 210 SASPYSIDQENMMQARDILFVAREIVNEYPDVLERSNVTSKEFQVSDTETYTLESTNLFL 269

Query: 232 N----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
                +  ++ G+KTG    +G  I+   +     I+ V +G  T  ER      L+T+ 
Sbjct: 270 PGNAYERDDVSGLKTGTESIAGRCIIIMSQIDGRDIMLVTLGAETEDERYVNTGTLLTAL 329

Query: 288 LEK 290
            E 
Sbjct: 330 QEN 332


>gi|289769992|ref|ZP_06529370.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
 gi|289700191|gb|EFD67620.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
          Length = 542

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 11/209 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P+     +DV      G   D+   P AS+ K+MT Y++      K      +I + + A
Sbjct: 194 PESGQAALDVQGIGSFGSSGDQKPVPIASVAKVMTAYLVLRDHPLKSGAEGPKIKIDQAA 253

Query: 111 ATQN----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
             Q+     S + +      +  + + A++  SAN+V+     + +GSEK F   M+  A
Sbjct: 254 EDQSQAGQESTVDVFAGDSISQREALQAILIASANNVARLLARWDAGSEKAFVEKMNGAA 313

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR-YRNRIIT 225
           K +GM NT Y + SGL++   ++TA DQ  L     K  P + +  ++  +  Y+     
Sbjct: 314 KDLGMTNTTYTDPSGLNNTT-VSTAVDQVKLAKAAMKE-PAFREVAAMMSYNDYKGENHG 371

Query: 226 NHNKLLNKMHN-IDGIKTGYTRNSGFNIV 253
           N N+L+   HN + GIKTG T ++  N+V
Sbjct: 372 NWNQLVG--HNGVVGIKTGTTTSALGNLV 398


>gi|295109905|emb|CBL23858.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162]
          Length = 412

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 124/250 (49%), Gaps = 27/250 (10%)

Query: 38  SIIMIS-MASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQS 95
           +I+M+  ++ +L+A    S++++D +  ++   K+ E PR  AS TK++T  +  E    
Sbjct: 31  AILMVPQLSDDLYA---LSAVLMDADSGRILYEKEGEMPRPNASTTKVLTCILALENGDG 87

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                +  + VS  AA+Q   KL L++   +  E  + +L+ +S ND + A  E I GS 
Sbjct: 88  -----DDYVQVSANAASQPQVKLGLQKGEQYYLEDLLYSLLLQSHNDSAVAIAEHIGGSV 142

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKN----QITTARDQAIL-------GILLRKN 204
           K F+ LM+ KA+KIG  +T +   +GL  ++      TTA D A +        + L+  
Sbjct: 143 KGFSDLMNAKARKIGCTDTHFITPNGLDAEDSSGTHHTTASDLARIMRYAIKNKVFLKIA 202

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP-- 262
             + Y +  + K   R   + N N L +    +   KTG+T ++G+  V +++ KDD   
Sbjct: 203 QTKEYSFSDLSK--KRTFSVHNTNALFSMTDGVLAGKTGFTGDAGYCYVCAVQ-KDDRTF 259

Query: 263 -IVAVVMGMP 271
            I  +  G P
Sbjct: 260 IIALLAAGWP 269


>gi|256786097|ref|ZP_05524528.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
          Length = 577

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 11/209 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P+     +DV      G   D+   P AS+ K+MT Y++      K      +I + + A
Sbjct: 229 PESGQAALDVQGIGSFGSSGDQKPVPIASVAKVMTAYLVLRDHPLKSGAEGPKIKIDQAA 288

Query: 111 ATQN----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
             Q+     S + +      +  + + A++  SAN+V+     + +GSEK F   M+  A
Sbjct: 289 EDQSQAGQESTVDVFAGDSISQREALQAILIASANNVARLLARWDAGSEKAFVEKMNGAA 348

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR-YRNRIIT 225
           K +GM NT Y + SGL++   ++TA DQ  L     K  P + +  ++  +  Y+     
Sbjct: 349 KDLGMTNTTYTDPSGLNNTT-VSTAVDQVKLAKAAMKE-PAFREVAAMMSYNDYKGENHG 406

Query: 226 NHNKLLNKMHN-IDGIKTGYTRNSGFNIV 253
           N N+L+   HN + GIKTG T ++  N+V
Sbjct: 407 NWNQLVG--HNGVVGIKTGTTTSALGNLV 433


>gi|328887221|emb|CCA60460.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces venezuelae ATCC
           10712]
          Length = 315

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 96/214 (44%), Gaps = 9/214 (4%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           PK     + +  +   G + D    P ASLTK+MT ++I E    K       I V + A
Sbjct: 58  PKGGQSAVALEGSGPVGTRGDGRPVPIASLTKVMTAHVILEEHPLKPGESGPMIEVDRQA 117

Query: 111 A----TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
           A        S + L+    ++  Q +  L+  S N+V+     + SG+++ FA  M   A
Sbjct: 118 AYEVGVGGESTVPLQAGRRYSQRQLLEMLLIPSGNNVARLLARWDSGTQEAFAEKMQRTA 177

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-RIIT 225
             +GM+++ Y  ASG+ +    +TA DQ  L     KN   + +    R         IT
Sbjct: 178 GGLGMKDSTYTGASGI-EVTTTSTAADQLALARKAMKNA-VFREIVGTRSVTVPGVGTIT 235

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           N N LL+    + GIKTG +  +G N++ +   +
Sbjct: 236 NTNPLLDT-PGVVGIKTGSSTPAGGNLLWACEVR 268


>gi|228985666|ref|ZP_04145819.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774061|gb|EEM22474.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 272

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 99/197 (50%), Gaps = 12/197 (6%)

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT YI  E L    + L+  + +S        S + +  K   T    +  L+    N  
Sbjct: 1   MTEYITLEQLNEGTIQLDEVVKISNEVFRAETSPIQVTSKDRTTVRDLLHTLLLTGNNRS 60

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGM-QNTIYKNASGL-HDKNQI--TTARDQAILGI 199
           + A  E I+G+E KF  LM+ KAK + + Q++ + NA+G+ +D N++  TTA + A L  
Sbjct: 61  ALALAEHIAGNEDKFTQLMNEKAKHLKLSQSSPFLNATGMNNDTNKLSTTTAIEVAKLAT 120

Query: 200 LLRKNFPQYYKYFSIR--KFRYRNRIITNHNKL---LN---KMHNIDGIKTGYTRNSGFN 251
            L  +FP       +   +F +++  + N NK+   LN   K   +DG++T ++ N  ++
Sbjct: 121 QLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKHQGVDGLQTSFSTNGNYS 180

Query: 252 IVTSLRYKDDPIVAVVM 268
            V++ +  D  +++V++
Sbjct: 181 FVSTAKRGDTRLISVIL 197


>gi|210615749|ref|ZP_03290730.1| hypothetical protein CLONEX_02948 [Clostridium nexile DSM 1787]
 gi|210150085|gb|EEA81094.1| hypothetical protein CLONEX_02948 [Clostridium nexile DSM 1787]
          Length = 413

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 121/263 (46%), Gaps = 32/263 (12%)

Query: 43  SMASELHAKPKY--SSIVIDVNKNQM----TGFKQDEPRYPASLTKMMTLYIIFEYLQSK 96
           S A E   K  Y  S++++D +  ++     G++Q   +  AS TK+MT  +  E  +  
Sbjct: 36  SYAKEEEPKQLYAQSAVLMDADSGRVLFEKNGYEQ---KAMASTTKIMTCILALEKGKPD 92

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           ++     + VS+ AA Q    L +     F     + +L+  S ND + A  E + G+ +
Sbjct: 93  QI-----VTVSENAARQPRVHLGMANGEQFYLRDLLYSLMLESHNDSAVAIAEQVGGTVE 147

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLH--DKN--QITTARDQAILGILLRKNFPQYYKYF 212
            FA +M+ KA+KIG ++T +   +GL   D+N    TTA + A +     K  PQ   + 
Sbjct: 148 GFARMMNEKAEKIGCKDTYFITPNGLDASDENGKHSTTAEELAKIMRYCIKLSPQKELFL 207

Query: 213 SIRKFRY---------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
            I + +          R     NHN  L  M      KTG+T ++G+  V +L+  +   
Sbjct: 208 EITQTQNHTFTDVEGKRQFSCNNHNVFLGMMDGALSGKTGFTGDAGYCYVGALKQGERTF 267

Query: 264 VAVVMGM--PTS---QERDQKAL 281
           +  ++G   P +   + +D KAL
Sbjct: 268 IVALLGCGWPNNKGYKWKDTKAL 290


>gi|71906306|ref|YP_283893.1| murein-DD-endopeptidase [Dechloromonas aromatica RCB]
 gi|71845927|gb|AAZ45423.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Dechloromonas aromatica RCB]
          Length = 359

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 25/227 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++VID +  Q    KQ +   P AS++K+MT  ++ +     KL L   + +       
Sbjct: 113 SALVIDQSTGQAMLEKQPDLVVPIASISKLMTAMVVLDA----KLDLQEVVTIGDADVDG 168

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              ++  L   T  T E  +L  +  S N  + + G    G    F   M+ KA+ +GM 
Sbjct: 169 LKGTRSRLPVGTTMTREAAMLLALMSSENRAAHSLGRHYPGGLPAFVQAMNKKAQALGMY 228

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----------IRKFRYRN 221
           N+ ++  +GL   N ++TA D A + +     +P+  +Y +           IR F   N
Sbjct: 229 NSRFEEPTGL-SSNNVSTAHDLARM-VAAAARYPEIRQYSTTAEAKVELNGRIRDFHNTN 286

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            ++ N N        I   KTGY   +G  +V   R  D P+V V++
Sbjct: 287 ALVRNDN------WEIGVSKTGYISEAGRCLVMQARVADKPVVIVLL 327


>gi|154502526|ref|ZP_02039586.1| hypothetical protein RUMGNA_00339 [Ruminococcus gnavus ATCC 29149]
 gi|153796922|gb|EDN79342.1| hypothetical protein RUMGNA_00339 [Ruminococcus gnavus ATCC 29149]
          Length = 423

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 123/262 (46%), Gaps = 29/262 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D +  ++   K  E   P AS TK+MT  +  E     +   +  + VS  AA Q
Sbjct: 58  SAVLMDADSGRILFAKNAETERPMASTTKIMTCILALE-----RADPDESVSVSANAAAQ 112

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
              +L   E   F  +  + +L+  S ND +    E ++GS ++FA  M+ KA+++G+ +
Sbjct: 113 PRVRLGTVEGQKFKLKDLLYSLMLESHNDTAVMLAEHLAGSVEQFADEMNQKARELGLSH 172

Query: 174 TIYKNASGLHDKN----QITTARDQA------ILGILLRKNFPQY-----YKYFSIRKFR 218
           T +   +GL   +      TTA + A      ++    RK F +      Y++  + + +
Sbjct: 173 THFVTPNGLDGADDGGSHRTTAEELARIMRYCVMESPKRKEFLEITGVSSYQFSDLEQTQ 232

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL-RYKDDPIVAVV-MGMPTSQ-- 274
             + I  NHN  L  M      KTG+T  +G+  V +L R K   IVA++  G P ++  
Sbjct: 233 TYSCI--NHNAFLTMMEGAVSGKTGFTGEAGYCYVGALKREKRTFIVALLACGWPNNRSY 290

Query: 275 --ERDQKALELITSFLEKKTLK 294
             E  +K +E      E +++K
Sbjct: 291 KWEDTKKLMEYGLEHFEYQSMK 312


>gi|302385106|ref|YP_003820928.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           saccharolyticum WM1]
 gi|302195734|gb|ADL03305.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           saccharolyticum WM1]
          Length = 479

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 23/180 (12%)

Query: 35  LFLSIIMIS--MASELHAKPKYSS---------IVIDVNKNQMTGFKQD--EPRYPASLT 81
           + +S I++S      ++AKP + S         IVID +   +  F Q+   P  PAS+T
Sbjct: 7   VLISCILVSQLFLMTVYAKPDWPSDTGIQAEAGIVIDGDSGAVL-FGQNIHAPYPPASIT 65

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGILALIT 137
           K++T  I+ E        LN  +  SK +       + +KL +      + E  + +LI 
Sbjct: 66  KILTALIVLE-----NADLNDMVTFSKDSVYNVEEGSGNKLNVDTGDKLSVEDCLYSLIL 120

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S N  + A  E ++GS + F  +M+ K K++G   + + N SGL+   Q  TA D A++
Sbjct: 121 HSCNQAANALAEHVAGSREAFVSMMNEKIKELGCVESHFDNPSGLNGDTQYVTAYDMALI 180


>gi|295094890|emb|CBK83981.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus sp. ART55/1]
          Length = 376

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 108/237 (45%), Gaps = 20/237 (8%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE R  AS TK++T  +  E       +L   +  S  A+     +L +++   +T E  
Sbjct: 60  DEHRPNASTTKILTCILAIECG-----NLADDVTASSYASKMPEVRLGVRDGEKYTLEDM 114

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--HDKNQI- 188
           + A++  S ND +    E I GS + FA +M+ KA++IG  +T +   +GL   D+N + 
Sbjct: 115 LYAMMLESYNDAAVVIAEHIGGSVQHFAEMMNAKAEEIGCHSTYFITPNGLDAQDENGVH 174

Query: 189 -TTARDQAIL---GILLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLLNKMHNID 238
            T+A D   +    IL+     ++ K    + + +      R     NHN  L+ M    
Sbjct: 175 GTSAEDLVRIMRYCILISPQKDEFLKITRTKSYTFTDNTGNRTFACINHNAFLDMMPCAL 234

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM--PTSQERDQKALELITSFLEKKTL 293
             KTG+T ++G+  + +   +    +  ++G   P ++    K    + +F ++ T+
Sbjct: 235 SGKTGFTCDAGYCYIGAAEVEGHTYIWALLGCGWPNNKTYKWKDSRALVAFAQEHTI 291


>gi|255284449|ref|ZP_05349004.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
           DSM 14469]
 gi|255264994|gb|EET58199.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
           DSM 14469]
          Length = 403

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 115/251 (45%), Gaps = 32/251 (12%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +S++++D    ++   K +E   P AS TK+MT  +  E  +        +I V+   A 
Sbjct: 39  HSAVLMDGGSGRILFGKNEEEVLPMASTTKIMTCILTLESGR------QGEIAVASANAA 92

Query: 113 QNPSKLYLKEKT--YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             P K++L  +T   F  E  + +L+  S ND +    E I GS + FA +M+ KA ++G
Sbjct: 93  AQP-KVHLGVRTGEEFYVEDLLYSLMLESHNDSAVMIAEHIGGSVEGFAAMMNEKAAQLG 151

Query: 171 MQNTIYKNASGLHDKN----QITTARDQAILGILLRKNFPQYYKYFSIRKFRY------- 219
             +T +   +GL   +      TTA D A +        PQ   +  I + R        
Sbjct: 152 CVSTHFVTPNGLDATDGSGTHSTTAADLAEIMRYCVSISPQREAFLQITQTRSYSFSNVE 211

Query: 220 --RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP---IVAVV-MGMP-- 271
             R+    NHN  ++ M  +   KTG+T  +G+  V +L  +DD    IVA++  G P  
Sbjct: 212 QSRSFSCQNHNAFMDMMEGVISGKTGFTSAAGYCYVCAL--EDDGRLFIVALLACGWPDN 269

Query: 272 -TSQERDQKAL 281
            T + RD  AL
Sbjct: 270 RTWKWRDAAAL 280


>gi|325473431|gb|EGC76626.1| hypothetical protein HMPREF9353_02421 [Treponema denticola F0402]
          Length = 303

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 89/179 (49%), Gaps = 19/179 (10%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP---SKLYLKEKTYFTTEQGIL 133
           PASLTK++T+Y + +  + K L      P  +  A   P   + + L E    + E+ I 
Sbjct: 125 PASLTKLVTIYTMLQKPEFKDLK-KVVFPPKEAWAIFLPKGAAWMGLGENQSLSIEELIR 183

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +   S ND + A      GS +KF + M+   K +G+++T ++++SGL +KNQ TTARD
Sbjct: 184 GMAVCSGNDAALAAALLTEGSLEKFTLKMNEAVKTMGLKSTRFEDSSGLSEKNQ-TTARD 242

Query: 194 QAILGILLRKNFPQYYKYF-SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            A+  +   K +P+  K F S+ +  Y  +    HN L         IK  Y R  GF+
Sbjct: 243 FALFSLHYLKQYPENLKKFHSVNEISYPQK----HNIL---------IKKNYRRFKGFS 288


>gi|225378096|ref|ZP_03755317.1| hypothetical protein ROSEINA2194_03756 [Roseburia inulinivorans DSM
           16841]
 gi|225210097|gb|EEG92451.1| hypothetical protein ROSEINA2194_03756 [Roseburia inulinivorans DSM
           16841]
          Length = 328

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 99/214 (46%), Gaps = 24/214 (11%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQ 130
           E  YPAS TK++T YI  +Y      +L   + VS+ AA Q  + S   LK       + 
Sbjct: 100 EKLYPASTTKILTAYIALKYG-----NLEDYVTVSENAANQASDSSVCGLKAGDVVQLKD 154

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  ++ +S ND + A  E I GS + FA +M+ +A  +G   + + N +GL D+N  T+
Sbjct: 155 LLYGMMLKSGNDAAIAIAEHIGGSVEGFADMMNQEALAMGATRSHFVNPNGLPDENHYTS 214

Query: 191 -----------ARDQAILGILLRKNFPQYYKYFSI----RKFRYRNRIITNHNKLLNKMH 235
                       +DQ  L I+   ++   Y   +     + +   N+ +T   K    + 
Sbjct: 215 VYDLYLIFQNAVQDQTFLDIISTMSYDVVYTDVNGAGVEKTWENTNQYLTGKEKAPEGIT 274

Query: 236 NIDGIKTGYTRNSGFNIVT-SLRYKDDPIVAVVM 268
            + G KTG T  +G+ +V  S      PIV++V+
Sbjct: 275 VVGG-KTGTTGAAGYCLVLYSYNASGQPIVSIVL 307


>gi|163939181|ref|YP_001644065.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
 gi|163861378|gb|ABY42437.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
          Length = 428

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 100/201 (49%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++             ++
Sbjct: 73  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFHPGETINRNTALM 127

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G +++ +   +GLHD N  TT  D
Sbjct: 128 ILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGAKDSHFVTPNGLHDPNHYTTPYD 187

Query: 194 QAILGILLRKNFPQYYKYFS----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  +          +   I N +      +++ G KTG+T N  
Sbjct: 188 MAMITRGVQK-YPEILQAMNTKRTTVTTSTQTVSIFNKSTYFENPYSMGG-KTGFT-NEA 244

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 245 RNTLVLLNEKDGNRIINVVMA 265


>gi|1149632|emb|CAA60207.1| dacF [Clostridium perfringens]
          Length = 96

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 53/78 (67%)

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           L+E   +T E+ +  L+ +SAND + A  E ISGSE+KF  LM+ +A+++G +NT + NA
Sbjct: 3   LQEGDKYTVEEFVNRLLIQSANDAAVALAEDISGSEEKFRKLMNERAEELGAKNTHFVNA 62

Query: 180 SGLHDKNQITTARDQAIL 197
           SGL + + +TT  D A++
Sbjct: 63  SGLFEDDHMTTPYDLALI 80


>gi|229010663|ref|ZP_04167863.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
 gi|228750628|gb|EEM00454.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
          Length = 407

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 100/201 (49%), Gaps = 15/201 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGIL 133
           +PAS+TK++T  ++ E+ + +      Q   S+ A  Q  S  ++             ++
Sbjct: 52  FPASMTKVLTAILLMEHTKPED-----QFTFSQLALDQEKSNYQIEFHPGETINRNTALM 106

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  SANDVS A  E I GS + FA +M+ +AK++G +++ +   +GLHD N  TT  D
Sbjct: 107 ILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGAKDSHFVTPNGLHDPNHYTTPYD 166

Query: 194 QAILGILLRKNFPQYYKYFS----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++   ++K +P+  +  +          +   I N +      +++ G KTG+T N  
Sbjct: 167 MAMITRGVQK-YPEILQAMNTKRTTVTTSTQTVSIFNKSTYFENPYSMGG-KTGFT-NEA 223

Query: 250 FNIVTSLRYKD-DPIVAVVMG 269
            N +  L  KD + I+ VVM 
Sbjct: 224 RNTLVLLNEKDGNRIINVVMA 244


>gi|160935078|ref|ZP_02082464.1| hypothetical protein CLOLEP_03954 [Clostridium leptum DSM 753]
 gi|156866531|gb|EDO59903.1| hypothetical protein CLOLEP_03954 [Clostridium leptum DSM 753]
          Length = 460

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 101/234 (43%), Gaps = 31/234 (13%)

Query: 72  DEPRYPASLTKMMTLYII---FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           DE   PAS TK++T  ++    E L    + L  ++  S      + + + + E    + 
Sbjct: 59  DERIEPASTTKILTYIVVSENVEDLDGTTVTLTQELKDSLEGTGSSIANIMVGET--MSI 116

Query: 129 EQGILALITRSANDVSTAFGEFISG--------SEK-----KFAILMSNKAKKIGMQNTI 175
            + +  L+  S ND +    +++ G         EK     +F  +M++KA ++G   T 
Sbjct: 117 YEALNCLMVPSGNDAAVILADYVGGRKNQETGNPEKLSNIDRFVQMMNDKAAELGCTGTH 176

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQY-------YKYFSIRKFRYRNRIITNHN 228
           + N  GLHD+N  TTARD  I+      + P++       Y        +   R+ T + 
Sbjct: 177 FANPDGLHDENHYTTARDMGIMA-EYAMDLPRFMDIVSQTYHIVPATNMQEERRLDTTNL 235

Query: 229 KLLNKMHN-----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
            +L    +     + GIKTG+   +G  IVT+ + +    + V MG P    +D
Sbjct: 236 MMLPGYPDYYYQYVTGIKTGWHDQAGDCIVTTAKAEGYAYLCVAMGSPHVAGQD 289


>gi|302385725|ref|YP_003821547.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           saccharolyticum WM1]
 gi|302196353|gb|ADL03924.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           saccharolyticum WM1]
          Length = 439

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 103/219 (47%), Gaps = 23/219 (10%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D +  + + G  +D  R  AS TK+MT  +  EY      +L+  +  S+ A++Q
Sbjct: 61  SAVLMDASTGRILYGKNEDIARPMASTTKIMTCILALEYG-----NLSDTVTASQNASSQ 115

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
               L + +   F  +  + +L+  S ND +    E I GS++ FA LM+ KA+ +G  +
Sbjct: 116 PKVHLGVYKGETFLLKDLLYSLMLESHNDAAMMIAEHIGGSQEGFAGLMNQKARDLGCTD 175

Query: 174 TIYKNASGLHD--------KNQITTARDQAILGILLRKNFPQYYKYFSI---RKFRY--- 219
           T +   +GL          K   TTA D A +        P+  ++  I   + + +   
Sbjct: 176 TYFITPNGLDAREEKDGQVKEHSTTAADLARIMNYCIGQSPKKKEFLEITGTKSYSFTDL 235

Query: 220 ---RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
              R+    NHN LL  M+     KTG+T  +G++ V +
Sbjct: 236 EGKRSYSCNNHNTLLAMMNGAFSGKTGFTGGAGYSYVGA 274


>gi|282891874|ref|ZP_06300353.1| hypothetical protein pah_c200o019 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498134|gb|EFB40474.1| hypothetical protein pah_c200o019 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 427

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 102/230 (44%), Gaps = 31/230 (13%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---------PSKLYLKEKTYF 126
           +PAS+TK+ T   + ++   K   + T    S    T+          P+   +   T+ 
Sbjct: 54  FPASITKIATAAFVLKFFSDKLDVIVTAEQDSIGWVTEEAKRKSNYTLPAYWLVPGGTHM 113

Query: 127 TTEQG--------ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
              +G        +  L+  SAND +    +++ G+   F   ++  AK+ G Q+T + N
Sbjct: 114 GIMKGEQLSLEDLLHGLMLVSANDSANVIAQYVGGTVPDFVDQLNAYAKQAGCQHTTFHN 173

Query: 179 ASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF------RYRNRIITNHNKLLN 232
             GLH     TTA D A+L      + P + K F   K+      +  + ++  ++ LL 
Sbjct: 174 PHGLHHPEHKTTAYDMALLAKEAL-SIPAFCKMFGTVKYTRPKTNKQESSVLVQNHPLLK 232

Query: 233 K----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +         G KTGYT  +  N+V + R KD  ++AV++    ++ERDQ
Sbjct: 233 QGKFYYAKALGAKTGYTNLAAHNLVVAARDKDRTLIAVLL---KTKERDQ 279


>gi|94993641|ref|YP_601739.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS10750]
 gi|94547149|gb|ABF37195.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS10750]
          Length = 410

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 133/303 (43%), Gaps = 26/303 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R I L+   LF +   +S   E     K++ I + +   ++   K  +   P AS++K
Sbjct: 2   IKRLISLVVIALFFAASTVS-GEEYSVTAKHA-IAVALESGKVLYEKDAKEVVPVASVSK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ +   KL+ ++ + +S    +       S + L ++ Y T ++ + AL+  
Sbjct: 60  LLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPLDKRKY-TVKELLSALVVN 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           +AN  + A  E I G+E KF   M  + ++ G+ +    N++GL               D
Sbjct: 119 NANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
                 A D AI+   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIFAGQTIYSYNYMLKGMPCYREGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
             GY++ +G + V +       ++ VV+    S E D    +     L+   +  Q+   
Sbjct: 239 FVGYSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQL 298

Query: 301 KDN 303
            +N
Sbjct: 299 IEN 301


>gi|146319524|ref|YP_001199236.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis 05ZYH33]
 gi|145690330|gb|ABP90836.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis 05ZYH33]
          Length = 415

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 128/262 (48%), Gaps = 33/262 (12%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP--ASLTKMMTLYIIFEYLQSKKLHLN 101
           +A +     K++ I ++V+  ++  ++QD       AS++K +++Y+++E L   ++ LN
Sbjct: 24  LAEDFSVAAKHA-IAVEVSSGKIL-YEQDAETKASIASISKTLSIYLVYEALAKGEITLN 81

Query: 102 TQI-----PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           T +     P S T+ T+  S + L E++Y   +    +LIT S+N    A  E I+GSE 
Sbjct: 82  TMVDISDYPYSLTSNTE-LSNVNLDERSYSVRDLLNASLIT-SSNSAIIALAEKIAGSEA 139

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKN--------------QITTARDQAILGILLR 202
            F   M  K ++ G+ +T   N SGL + +               + +A D AI+   L 
Sbjct: 140 AFVDRMKAKVQEWGITDTKIVNVSGLDNTDLGENIYPGSSPEDVNMFSALDVAIIARRLI 199

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMH---NIDGIKTGYTRNSGFNIVTSLRY 258
            ++PQ     S+  + +      + N++L +  H    +DG+KTG + ++G + + + + 
Sbjct: 200 LDYPQVLDITSLNAYDFGGYTYYSTNQMLSDGTHARGGVDGLKTGTSNSAGSSFLATTQQ 259

Query: 259 KDDPIVAVVM----GMPTSQER 276
               I+ VV+    G+ + + R
Sbjct: 260 AGMRIITVVLNANDGLTSPENR 281


>gi|225017092|ref|ZP_03706284.1| hypothetical protein CLOSTMETH_01017 [Clostridium methylpentosum
           DSM 5476]
 gi|224950149|gb|EEG31358.1| hypothetical protein CLOSTMETH_01017 [Clostridium methylpentosum
           DSM 5476]
          Length = 445

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 123/261 (47%), Gaps = 41/261 (15%)

Query: 31  MGKILFL---SIIMISMASELHAKPKY---------SSIVIDVNKNQMTGFKQDEPRY-P 77
           M +++FL    I+++S+ + L A+  Y         ++ ++++   ++   K  + +Y P
Sbjct: 1   MKRLIFLLLPCIVLVSLFAPLTAQAAYTPDFEINSEAAYLVNMETGKVIYEKNAQTQYLP 60

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTEQGIL 133
           AS TK+MT  I  E +       NT +        Q    + S   L+     + +  + 
Sbjct: 61  ASTTKIMTAIIALETIDDID---NTMVTAPAYVFDQLYGLSASNADLRVDEQLSMKDLLY 117

Query: 134 ALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           AL+ RSA + ++   ++I  G  +KF  +M+ KA++IG  NT + NA GL + +Q+TTA 
Sbjct: 118 ALMLRSACEGASIIADYIGEGDIQKFVDMMNAKAEEIGCTNTHFVNAHGLDEPDQLTTAY 177

Query: 193 DQAI----------LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNID---- 238
           D  +          +G   R+    Y    +        R+I++ NK+++   +++    
Sbjct: 178 DMYLITNYALTNEQIGARFREIATTYSYTMAATNKHPEPRVISHTNKMMSSNTDLNGGYS 237

Query: 239 -----GIKTGYTRNSGFNIVT 254
                GIKTG T N  FN+VT
Sbjct: 238 RSYVQGIKTG-TSNEYFNLVT 257


>gi|266623051|ref|ZP_06115986.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
 gi|288865192|gb|EFC97490.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
          Length = 309

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 97/240 (40%), Gaps = 34/240 (14%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           L ++     S   A    ++ V D+ +K  + G    E  YPAS+TK MT  +  +Y   
Sbjct: 57  LCVVTADTPSSDQAVTAEAAAVFDLSDKTVIFGKNPFEKLYPASITKTMTALLAIKY--- 113

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
             L     +P          +   +K     T EQ +  L+  S ND   A    + GS 
Sbjct: 114 GNLSDEVTVPEEAVITESGATLCGIKPGDKLTMEQLLYGLMLPSGNDAGAAIAVHMDGSI 173

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           +KFA  M+ +A+K+G   T + N  GL+D+N  TTA D  ++       F +  KY   R
Sbjct: 174 EKFADRMNEEARKLGATGTHFVNPHGLNDENHYTTAYDLYLI-------FNEAMKYPDFR 226

Query: 216 K----------------------FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
           K                      ++  N  +T    +   +  + G KTG TR +G  ++
Sbjct: 227 KVIGTSSYDAVYALASGETTTKTWKQSNWYMTGERNMPEGLTALGG-KTGTTRAAGSCLI 285


>gi|153815363|ref|ZP_01968031.1| hypothetical protein RUMTOR_01597 [Ruminococcus torques ATCC 27756]
 gi|145847222|gb|EDK24140.1| hypothetical protein RUMTOR_01597 [Ruminococcus torques ATCC 27756]
          Length = 519

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 110/234 (47%), Gaps = 26/234 (11%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S+IV+++N    + G K ++  YPAS+TK++T  +  E         + ++  S+ + + 
Sbjct: 73  SAIVMEMNSGAILYGKKINDKHYPASITKLLTALVALENADP-----DDEVYFSEDSVSF 127

Query: 113 --QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS----GSEKKFAILMSNKA 166
                + + ++     +    +  ++  SAN+VS A  E +     G  + F   M+ + 
Sbjct: 128 LEYGDASIGMRPGEILSMNDALYGMLLASANEVSYAIAESVGKKMGGGFETFIQKMNERC 187

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY-----FSIRKFRYRN 221
           +++G   + + NA+GLHD+N  TTA D A++G  + + F ++ +      ++I      N
Sbjct: 188 EELGCTGSHWTNANGLHDENHYTTAHDMALIGSAVYQ-FDKFREVTQTLNYTIPPTNLVN 246

Query: 222 RIIT---NHNKLLNKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              T   NH  L    H       G KTGYT  +   +VT     D  +VAVV+
Sbjct: 247 ESRTFQQNHKMLWVGAHYSYDYCTGGKTGYTDQAKTTLVTMADNADMQLVAVVL 300


>gi|145219555|ref|YP_001130264.1| Serine-type D-Ala-D-Ala carboxypeptidase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205719|gb|ABP36762.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 311

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 86/182 (47%), Gaps = 15/182 (8%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK++T  +  E   S KL     IP  + A    PSK   +          + A +
Sbjct: 66  PASLTKILTCVLAIE---SGKLDQIVVIP--REATLVEPSKAGFRTGDRIRLIDLVKASM 120

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD---KNQITTARD 193
             S+ND + A    +SGS K FA  M+ +A+ IGM+++ + N +G         ++TA D
Sbjct: 121 VSSSNDAAFAIAMHLSGSVKGFAAAMNYRARAIGMKHSSFTNPAGFDTGEYSGNLSTAED 180

Query: 194 QAIL---GILLRKNFPQYYKYFSIRKFRYRNR---IITNHNKLLNKMHNIDGIKTGYTRN 247
             +L    I L  +F       S+    YR     ++  HNKLL +     GIKTG+TR 
Sbjct: 181 LLVLTEYAIRL-PHFNDMAMLGSVIVPEYRTGKMFLLRTHNKLLARYPYAVGIKTGFTRR 239

Query: 248 SG 249
           +G
Sbjct: 240 AG 241


>gi|241764854|ref|ZP_04762858.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidovorax
           delafieldii 2AN]
 gi|241365603|gb|EER60333.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidovorax
           delafieldii 2AN]
          Length = 358

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 97/209 (46%), Gaps = 25/209 (11%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT---AATQ 113
           VID + +++   K D    P ASLTK+MT  I+ +       HL    P++ T     T+
Sbjct: 110 VIDQDTHEVLLSKNDHAVLPIASLTKLMTGLIVTQA------HLPMDEPITITQDDVDTE 163

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+  L   T  T  + +   +  S N  + A G    G  + F  LM++KA+ IGM +
Sbjct: 164 KGSRSRLSVGTTLTRGEMLHLALMSSENRAAHALGRTYPGGLEAFVALMNSKARSIGMTD 223

Query: 174 TIYKNASGLHDKNQITTARDQAIL-----GILLRKNF---PQYYKYFSIRKFRYRNRIIT 225
           T+Y   +GL  +NQ ++ARD A+L     G  + + F   P Y      +  ++ N    
Sbjct: 224 TVYVEPTGLSSRNQ-SSARDLALLVNVAHGDPVMREFSTSPGYEVAVGHKTLQFNNT--- 279

Query: 226 NHNKLL-NKMHNIDGIKTGYTRNSGFNIV 253
             N L+ N   NI   KTGY   +G  +V
Sbjct: 280 --NGLVKNPDWNIGLQKTGYISEAGRCLV 306


>gi|160935578|ref|ZP_02082953.1| hypothetical protein CLOBOL_00468 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441322|gb|EDP19032.1| hypothetical protein CLOBOL_00468 [Clostridium bolteae ATCC
           BAA-613]
          Length = 418

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 124/294 (42%), Gaps = 29/294 (9%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D +  + + G  QD  R  AS TK+MT  +  E  + +       +  S  AA+Q
Sbjct: 48  SAVLMDGDTGRILYGKGQDIIRPMASTTKIMTCILALENGRGED-----AVKASSNAASQ 102

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
               L ++E   +  E  + AL+  S ND +    E I GS + FA +M+ KA  +G  +
Sbjct: 103 PKVHLGVREGEEYRLEDLLYALMLESYNDAAVMIAEHIGGSVEGFAAMMNEKAAGLGCGD 162

Query: 174 TIYKNASGL-------HDKNQI--TTARDQAILGILLRKNFPQYYKYFSIRKFRY----- 219
           T +   +GL         K  I  TTA D A +        P   ++  I + +      
Sbjct: 163 TYFITPNGLDGVKTDEQGKEHIHSTTASDLARIMRYCVTESPAKDEFLKITQTQNHYFTD 222

Query: 220 ----RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM---PT 272
               R+    NHN  L  M  +   KTG+T  +G++ V ++  +    V  ++G    P 
Sbjct: 223 MAGKRSFNCYNHNAFLTMMEGVLSGKTGFTGGAGYSYVGAMENQGRTYVIALLGCGWPPH 282

Query: 273 SQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
              +   A +L T  LE    K +   +++  +   +   L  K+ +    Q +
Sbjct: 283 KTYKWSDARKLYTYGLEH--FKMKDVFQEETFARVPVSGGLCWKEGEGAIDQVE 334


>gi|328883123|emb|CCA56362.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces venezuelae ATCC
           10712]
          Length = 781

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 100/208 (48%), Gaps = 25/208 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-----LYLKEKTYFTTEQGI 132
           AS+TK MT Y+I      K      +I + + AA Q  ++        K +TY  TE+ +
Sbjct: 457 ASVTKTMTAYVILRDHPLKGKQQGPEIEIDQKAADQGKAEHESTAAVQKGQTY--TEKEL 514

Query: 133 LALI-TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           L L+   SAN+V+     + +GSE  F   M+  AK++GM  + Y + SGL D   ++T 
Sbjct: 515 LELLMIPSANNVARLLARWDAGSEAAFVEKMNAAAKQLGMTQSTYTDPSGLLDST-MSTP 573

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR------YRNRIITNHNKLLNKMHNIDGIKTGYT 245
           +DQ    + L K   QY  +  I             RI  N+N LL     + GIKTG +
Sbjct: 574 QDQ----LKLAKAVMQYDVFREIVNMPNVTVDGIPGRIENNNNILLKP--GVSGIKTGSS 627

Query: 246 RNSGFNIV----TSLRYKDDPIVAVVMG 269
             +G N++    T +  ++  I+ +VMG
Sbjct: 628 TPAGGNLLWAANTVVDGQNRRILGIVMG 655


>gi|329116584|ref|ZP_08245301.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parauberis
           NCFD 2020]
 gi|326906989|gb|EGE53903.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parauberis
           NCFD 2020]
          Length = 406

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 112/233 (48%), Gaps = 33/233 (14%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNT 102
            A++  A  +++ I ++ +  ++   K    + P ASLTK++T+YI  + +++ K+  N 
Sbjct: 24  FAADFSADSRHA-IAVESDTGKILYEKSGNKKAPIASLTKLLTIYITLKEIKAGKISWND 82

Query: 103 QIPVSKTAAT-------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
           Q+ +S+ A +        NP    L   TY   E    +LI  SAN  + A  E+I+GSE
Sbjct: 83  QVKLSEYAQSLATDPEISNPP---LTSDTYSVKELVDSSLIV-SANSSAIALAEYIAGSE 138

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGL---------------HDKNQITTARDQAILGIL 200
            KF  +M  + ++ G+ + +  ++SGL                D+N + +A+  AI+   
Sbjct: 139 PKFVDMMKKQVEQWGITDYLLVDSSGLPNSLLKGHTYPGSSPKDENML-SAKSLAIIAYH 197

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIKTGYTRNSG 249
           L  +FP+  +  S  +  +    + + N LL         +DG+KTG T  +G
Sbjct: 198 LIHDFPEVLQITSQPQMIWGYETLYSSNYLLPGQEMGRAGVDGLKTGTTNLAG 250


>gi|319891642|ref|YP_004148517.1| D-alanyl-D-alanine carboxypeptidase / Penicillin binding protein
           PBP4 [Staphylococcus pseudintermedius HKU10-03]
 gi|317161338|gb|ADV04881.1| D-alanyl-D-alanine carboxypeptidase / Penicillin binding protein
           PBP4 [Staphylococcus pseudintermedius HKU10-03]
          Length = 425

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 30/209 (14%)

Query: 69  FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKE 122
           F+ ++  YPAS+TK+MT+Y+  + ++ KKL LN  + ++       T    + +KLY  E
Sbjct: 62  FQSEQQWYPASMTKLMTMYLTLQAVKEKKLSLNDTVQITDQHYRMSTLPELSNTKLYPGE 121

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
              +T  + +   ++ S+N  +      +S S   F   M++ AK +GM +T Y N +G 
Sbjct: 122 T--YTVAELLQITVSASSNAAALILANQVSDSTSDFVDKMNDTAKSLGMTHTHYVNPTGA 179

Query: 183 --------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH- 227
                         H+ +  ++ARD AIL   + K+ P+   YF+ ++       +T + 
Sbjct: 180 ENRLLLEFAPKKYQHESSSTSSARDYAILAQHVVKDTPKIL-YFT-KQIAPTQHGVTYYT 237

Query: 228 -NKLLN----KMHNIDGIKTGYTRNSGFN 251
            N LL      +   DG+KTG +  + +N
Sbjct: 238 FNDLLEGGNMSLPGTDGLKTGSSDIADYN 266


>gi|323465190|gb|ADX77343.1| penicillin binding protein 4 [Staphylococcus pseudintermedius ED99]
          Length = 425

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 30/209 (14%)

Query: 69  FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKE 122
           F+ ++  YPAS+TK+MT+Y+  + ++ KKL LN  + ++       T    + +KLY  E
Sbjct: 62  FQSEQQWYPASMTKLMTMYLTLQAVKEKKLSLNDTVQITDQHYRMSTLPELSNTKLYPGE 121

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
              +T  + +   ++ S+N  +      +S S   F   M++ AK +GM +T Y N +G 
Sbjct: 122 T--YTVAELLQITVSASSNAAALILANQVSDSTSDFVDKMNDTAKSLGMTHTHYVNPTGA 179

Query: 183 --------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH- 227
                         H+ +  ++ARD AIL   + K+ P+   YF+ ++       +T + 
Sbjct: 180 ENRLLLEFAPKKYQHESSSTSSARDYAILAQHVVKDTPKIL-YFT-KQIAPTQHGVTYYT 237

Query: 228 -NKLLN----KMHNIDGIKTGYTRNSGFN 251
            N LL      +   DG+KTG +  + +N
Sbjct: 238 FNDLLEGGNMSLPGTDGLKTGSSDIADYN 266


>gi|317500835|ref|ZP_07959047.1| hypothetical protein HMPREF1026_00990 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316897715|gb|EFV19774.1| hypothetical protein HMPREF1026_00990 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 503

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 110/234 (47%), Gaps = 26/234 (11%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S+IV+++N    + G K ++  YPAS+TK++T  +  E         + ++  S+ + + 
Sbjct: 57  SAIVMEMNSGAILYGKKINDKHYPASITKLLTALVALENADP-----DDEVYFSEDSVSF 111

Query: 113 --QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS----GSEKKFAILMSNKA 166
                + + ++     +    +  ++  SAN+VS A  E +     G  + F   M+ + 
Sbjct: 112 LEYGDASIGMRPGEILSMNDALYGMLLASANEVSYAIAESVGKKMGGGFETFIQKMNERC 171

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY-----FSIRKFRYRN 221
           +++G   + + NA+GLHD+N  TTA D A++G  + + F ++ +      ++I      N
Sbjct: 172 EELGCTGSHWTNANGLHDENHYTTAHDMALIGSAVYQ-FDKFREVTQTLNYTIPPTNLVN 230

Query: 222 RIIT---NHNKLLNKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              T   NH  L    H       G KTGYT  +   +VT     D  +VAVV+
Sbjct: 231 ESRTFQQNHKMLWVGAHYSYDYCTGGKTGYTDQAKTTLVTMADNADMQLVAVVL 284


>gi|308234036|ref|ZP_07664773.1| D-alanyl-D-alanine carboxypeptidase [Atopobium vaginae DSM 15829]
 gi|328943433|ref|ZP_08240898.1| serine-type D-Ala-D-Ala carboxypeptidase [Atopobium vaginae DSM
           15829]
 gi|327491402|gb|EGF23176.1| serine-type D-Ala-D-Ala carboxypeptidase [Atopobium vaginae DSM
           15829]
          Length = 347

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 109/250 (43%), Gaps = 23/250 (9%)

Query: 40  IMISMASELHAKPKYSS---IVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           I+  +A+  HA   Y S    V D+ ++ ++     D    PASL K+MT+Y   +++QS
Sbjct: 78  IIDPLATAHHASGTYRSKYRYVYDITHRKEVINDDADVACAPASLVKLMTIYTALQHIQS 137

Query: 96  KKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
               L+   P+ K        +N S          T +  +   + RS  + +T      
Sbjct: 138 ----LDQVAPIDKETFQHLLDENASMAGFVADEQTTYKDLLYGTLLRSGGECATNLAIHT 193

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD--QAILGILLRKNFPQYY 209
           +GS   F   M++ A K+G+  T Y N +GL D NQI+ A D  +     L  K F +  
Sbjct: 194 AGSVDAFVKKMNDNAHKLGLSATHYTNPTGLDDPNQISCAADVVKVFNACLQDKRFKEIL 253

Query: 210 --KYFSIRKFRYRNRIITNHNKLLNKM-------HNIDGIKTGYTRNSGFNIVTSLRYKD 260
             + ++  K     + IT  N +L+ +         I G K+G T N+G   VT +   +
Sbjct: 254 TAQEYTSSKTNQHPKGITMKNNILSHITPEEQNGFKILGGKSGTTDNAGLCWVTLVTKNN 313

Query: 261 DPIVAVVMGM 270
              +  VMG+
Sbjct: 314 VDYIVCVMGV 323


>gi|260891367|ref|ZP_05902630.1| beta-lactamase [Leptotrichia hofstadii F0254]
 gi|260858750|gb|EEX73250.1| beta-lactamase [Leptotrichia hofstadii F0254]
          Length = 492

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 111/230 (48%), Gaps = 13/230 (5%)

Query: 75  RYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           ++P ASLTK+M + +  E +      L+ +I  +        S L  K    +T    + 
Sbjct: 162 KHPIASLTKVMNILVALEQVDRGNAKLDDKICFTPEFVNMGGSWLNAKAGDCYTLRDLLR 221

Query: 134 ALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGL----HDKN-Q 187
           A I  SAN+ +      I  G+   F  LM++KAK++GM +T Y   +GL     +KN  
Sbjct: 222 AEIIYSANNAAYLVAHHIGKGNIDNFVQLMNDKAKELGMNDTRYYTPAGLPSSMTNKNMD 281

Query: 188 ITTARDQAILG--ILLRKNFPQYYKY--FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTG 243
           I+TA D  +LG   +  +    + K     ++     + + +N N LL++   I G+KTG
Sbjct: 282 ISTAYDMYLLGKRAIRDERLRAWMKESELVLQNSEGEDVVYSNRNHLLDQF-GIYGLKTG 340

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
           +   +G+N++ S +  +  I++V +G  +   R +   +  T  LEK+ +
Sbjct: 341 FHAQAGYNMIVSSKIGNLEIISVTLGNKSDDARTEDQEQEFTQ-LEKRMI 389


>gi|187779546|ref|ZP_02996019.1| hypothetical protein CLOSPO_03142 [Clostridium sporogenes ATCC
           15579]
 gi|187773171|gb|EDU36973.1| hypothetical protein CLOSPO_03142 [Clostridium sporogenes ATCC
           15579]
          Length = 378

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 117/253 (46%), Gaps = 24/253 (9%)

Query: 34  ILFLSIIMISMASELHA---------KPKY----SSIVIDVNKNQMTGFKQDEPRYP-AS 79
           IL LS+I I       A         KP Y     +I ID +   +   K      P AS
Sbjct: 10  ILILSLIFIVTLIPTKAYGKEESQKNKPPYINARCAIAIDKDTGIVLFEKSANEIVPIAS 69

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
            TK+MT  +  +Y       L+ +I +S+ A     S +  K+    T  + +  L+ RS
Sbjct: 70  TTKIMTTLVALKYGD-----LDRKIEISENADKIKGSTVGYKKGEKITLRELLYGLMLRS 124

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND + A  E I+GS + F+ LM+  A +IG+ N+ +    GL      +TA D A L  
Sbjct: 125 GNDAAIAIAEGIAGSVEGFSKLMNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLA-LAT 183

Query: 200 LLRKNFPQYYKYFS---IRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
              K +  + K  S   ++K  Y   R   N NK+L K+   DG+KTGYT  +G  +VTS
Sbjct: 184 ATAKKYELFNKIVSSKDVKKEEYSFTRDYHNINKILWKIPEADGVKTGYTGKAGKCLVTS 243

Query: 256 LRYKDDPIVAVVM 268
            +   + I+ VV+
Sbjct: 244 SKINGNDIIIVVL 256


>gi|145522840|ref|XP_001447264.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124414764|emb|CAK79867.1| unnamed protein product [Paramecium tetraurelia]
          Length = 272

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 103/228 (45%), Gaps = 16/228 (7%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLN-TQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           R  AS+TK+MT Y++    ++  +H N T   VS  A+    +   L +    + E    
Sbjct: 47  REIASITKIMTFYVVLNMCRTMNVHTNNTYAEVSLQASLVGGTTADLLKGDVVSIEDLFY 106

Query: 134 ALITRSANDVSTAFGE-FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
            L+  S ND +    E F       F   M+NKA+++ M  T Y N  GL++KN +++A 
Sbjct: 107 GLMLPSGNDAAMTLAENFGKNPLIYFIQEMNNKARELQMTQTTYANPHGLNNKNNVSSAY 166

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRY----------RNRIITNHNKLLNKMHNIDGIKT 242
           D + L   L K+  ++++     K  +          R+ I  N NKLL       GIKT
Sbjct: 167 DVSKLCNQLLKD--EFFRKVVNTKIHFTTIQDEEGFTRDVIWENTNKLL--YQGFKGIKT 222

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           G T  +G  + +  +        V++G    ++R  + ++L+   L +
Sbjct: 223 GNTSVAGPCLASYYQTASRSFTIVILGCRNQEDRWSETMQLLQWCLSQ 270


>gi|331089269|ref|ZP_08338171.1| hypothetical protein HMPREF1025_01754 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330405821|gb|EGG85350.1| hypothetical protein HMPREF1025_01754 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 514

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 110/234 (47%), Gaps = 26/234 (11%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S+IV+++N    + G K ++  YPAS+TK++T  +  E         + ++  S+ + + 
Sbjct: 68  SAIVMEMNSGAILYGKKINDKHYPASITKLLTALVALENADP-----DDEVYFSEDSVSF 122

Query: 113 --QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS----GSEKKFAILMSNKA 166
                + + ++     +    +  ++  SAN+VS A  E +     G  + F   M+ + 
Sbjct: 123 LEYGDASIGMRPGEILSMNDALYGMLLASANEVSYAIAESVGKKMGGGFETFIQKMNERC 182

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY-----FSIRKFRYRN 221
           +++G   + + NA+GLHD+N  TTA D A++G  + + F ++ +      ++I      N
Sbjct: 183 EELGCTGSHWTNANGLHDENHYTTAHDMALIGSAVYQ-FDKFREVTQTLNYTIPPTNLVN 241

Query: 222 RIIT---NHNKLLNKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              T   NH  L    H       G KTGYT  +   +VT     D  +VAVV+
Sbjct: 242 ESRTFQQNHKMLWVGAHYSYDYCTGGKTGYTDQAKTTLVTMADNADMQLVAVVL 295


>gi|299144553|ref|ZP_07037632.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298517641|gb|EFI41381.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 290

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 125/276 (45%), Gaps = 32/276 (11%)

Query: 34  ILFLSIIMISMASELH-------AKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           I+FL +I+IS    L        AK  Y+S    V+D +KN++   K  +E    ASLTK
Sbjct: 9   IIFLMVIVISAGLTLLYFCNNKLAKIDYNSKAICVMDADKNKIIFEKNANEKLKIASLTK 68

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           +MT+ +  E    K L      PV     K     N S +    +     +  +   +  
Sbjct: 69  LMTVLVAIE----KNLDWEEISPVDVESYKNMVASNASMVGFYGRERVKVKDLLYGTMLA 124

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S  + + +     SGS + F I M+ KAK++G++ T + N  G+ ++N  +TARD A+L 
Sbjct: 125 SGGEAAMSLAIKSSGSLENFVIDMNEKAKELGLKETNFSNPVGMDEENNYSTARDMALLL 184

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKMHNID-------GIKTGYTR 246
               KN  ++ K F+ + +     +     I   + +L ++ + D       G K+G T+
Sbjct: 185 NEAIKN-EEFKKIFTAKNYTTTETLDHPNGINIESTVLKEISDEDKTDFKILGGKSGTTK 243

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            +G    T  +  +   + VV+G P  + R+   L+
Sbjct: 244 EAGLCWATLSKKGEKNYIIVVIGAPLDELRNPTMLQ 279


>gi|227524141|ref|ZP_03954190.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus hilgardii ATCC
           8290]
 gi|227088698|gb|EEI24010.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus hilgardii ATCC
           8290]
          Length = 393

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 104/224 (46%), Gaps = 29/224 (12%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK----EKTYFTTE 129
           PR  AS++K+MTLY++ + + +     N+++  S +        L        K  +T +
Sbjct: 148 PRAIASVSKLMTLYLVDKKVATAAYSWNSKVNTSYSGLKSLGQSLVYGGFKFTKNSYTVK 207

Query: 130 QGILALITRSANDVSTAFGEFISGS-----EKKFAILMSNKAKKIGMQNTIYKNASGLH- 183
           +   A +  S+N+ + A G++++G       K F  LM+ +AK   +    +  A+G+  
Sbjct: 208 ELYEAALIDSSNNAAIALGQWVAGGGTPSYNKSFVKLMNRQAKSWNLGKATFVTANGMEQ 267

Query: 184 ------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
                           + +A+D A++   L  ++P    Y  I+  +   ++  N+N LL
Sbjct: 268 NALKGYGYSTSGGNANLVSAKDVALIARHLITDYPSTLTYSKIKSMKVSGQLCYNYNNLL 327

Query: 232 N------KMHNIDGIKTGYTRNSGFNIV-TSLRYKDDPIVAVVM 268
           +      K  ++DG+KTG+T  +G+  V T  +   D ++ VV+
Sbjct: 328 SGRAFYQKSLDVDGLKTGFTDLAGYCFVGTGKKTGHDRLITVVL 371


>gi|323486820|ref|ZP_08092138.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum
           WAL-14163]
 gi|323399833|gb|EGA92213.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum
           WAL-14163]
          Length = 532

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 117/244 (47%), Gaps = 23/244 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-- 111
           + I++D N   +   K     Y PAS+TK++T  I+ E     +  ++  +  S+ A   
Sbjct: 39  AGIIMDANSGAVIYGKNIHATYAPASITKVLTALIVLE-----RCSMDETVTFSQNAVYN 93

Query: 112 -TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
              N S          + +  + AL+ +SAN+ + A  E ISG+ ++FA+LM+ KA ++G
Sbjct: 94  VESNSSSAGYDTGDTASVKDCLYALLLKSANEAANALAEHISGTTEEFAVLMNEKAAELG 153

Query: 171 MQNTIYKNASGLHDKNQITTARDQAIL--GILLRKNFPQ-----YYKYFSIRKFRYRNRI 223
            Q++ + N SGL+D+N   +A D A++        +F +     YY+     K     + 
Sbjct: 154 CQDSHFSNPSGLNDENHYVSAYDMALITKAAFENADFSKIVATTYYE-LPPNKKNPEGQG 212

Query: 224 ITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           I+  NK++ K        ++ G KTGYT  +   +V   +  +   V V++    +Q  D
Sbjct: 213 ISPGNKMIKKNWPDQYRPDVIGGKTGYTSIALNTLVIGAQQGETKFVTVILHSSGTQYSD 272

Query: 278 QKAL 281
            KAL
Sbjct: 273 TKAL 276


>gi|322517677|ref|ZP_08070540.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           vestibularis ATCC 49124]
 gi|322123665|gb|EFX95257.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           vestibularis ATCC 49124]
          Length = 432

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 123/287 (42%), Gaps = 38/287 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGIL 133
            S+TK++T Y++++ +    L  N+++ +S    +   +   S + L  + Y T +Q + 
Sbjct: 74  GSITKLLTAYMVYKAVDQGDLKWNSKVDISDYPFELTVSAGVSNIPLDARKY-TVKQLLD 132

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           A +  SAN  S A  E I G+E KF  +M  + K  G+ +    NASGL+          
Sbjct: 133 ATLIASANSASIALAEEIGGTESKFVDMMKAQLKDWGITDAKIVNASGLNNSYLGDNIYP 192

Query: 184 ----DKNQITTARDQAILGILLRKNFPQYYKYFSIRK-----FRYRNRIITNHNKLLNK- 233
               D+    +A+D A++   + K +P+      I K     F   N++ T++  L  + 
Sbjct: 193 GSKSDEENTMSAKDVAVIAQHVVKEYPE---ILDITKKTEADFDGVNKLKTSNYMLKGQP 249

Query: 234 --MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD-------QKALELI 284
                +DG+KTG T  +G + V         I+AV++    +   D          L  +
Sbjct: 250 SYRKGVDGLKTGTTDLAGASFVAHSNESGMSIIAVILNSDNTDTDDYARFTATNDLLNYV 309

Query: 285 TSFLEKKTL-KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
               E KT+ K  Q   K   S    K   +    K  ++  +KIDA
Sbjct: 310 VYHWESKTIAKKGQAIGKSQASVLDGKSKQVTAVAKSDFNIIQKIDA 356


>gi|302874922|ref|YP_003843555.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           cellulovorans 743B]
 gi|307690459|ref|ZP_07632905.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cellulovorans
           743B]
 gi|302577779|gb|ADL51791.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           cellulovorans 743B]
          Length = 349

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 15/244 (6%)

Query: 35  LFLSIIMISMASELHAKPKY------SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLY 87
           L   +I+IS+++ + A  K       ++I +DV   ++   K      P AS TK+MT  
Sbjct: 11  LIAVMILISISNNITAYGKVLSIDARAAIAMDVKSKRVLYEKNSVSLIPMASTTKIMTSL 70

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           +   Y      +L+ +I +SK AA    S +        T  + +  L+ RS ND + A 
Sbjct: 71  VALTYG-----NLDQEITISKKAAAIRGSTVNYMAGEKVTLRELLYGLMLRSGNDAAIAI 125

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG--ILLRKNF 205
            E I+G    F +LM+  A  IG  N+ +++  GL      TT  D AI+    +  + F
Sbjct: 126 AEGIAGDVDSFLVLMNEYANLIGATNSHFESPHGLDSNQHYTTTYDLAIITSKAMENRTF 185

Query: 206 PQYYKYFSIRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
            +     SI K      R  +N NK+L    +  G+KTGYT  +G  +V+S  Y  + IV
Sbjct: 186 REIVGCRSIEKGASGFTRGYSNINKILFLHGDATGVKTGYTGQAGKCLVSSFNYDGNDIV 245

Query: 265 AVVM 268
            +V+
Sbjct: 246 VIVL 249


>gi|297159756|gb|ADI09468.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           bingchenggensis BCW-1]
          Length = 786

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 93/183 (50%), Gaps = 16/183 (8%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIP-------VSKTAATQNPSKLYLKEKTYFTTEQ 130
           AS+TK+MT Y++   L+   L ++ + P         K + +++ S++ + E   +   Q
Sbjct: 459 ASVTKVMTAYVV---LKEHPLKVSEEGPTIKIDAQAGKESGSEDESRVEVDEGQTYNELQ 515

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  L+  S N+++     + SGSE+ F   M++ AK +GM+NT+Y + SG     + +T
Sbjct: 516 MLQMLLIPSGNNIARQLARWDSGSEEAFVKKMNDAAKDLGMKNTVYTDPSGFKATTK-ST 574

Query: 191 ARDQAIL--GILLRKNFPQYYKYFSIR--KFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           A DQ  L   ++  + F       +IR    +  +  I N+N LL K   + GIKTG + 
Sbjct: 575 ASDQLKLARAVMKSEAFRSVVATPNIRIPGLKTPDSKIYNNNNLLVK-PGVVGIKTGSST 633

Query: 247 NSG 249
            +G
Sbjct: 634 PAG 636


>gi|253579420|ref|ZP_04856690.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849518|gb|EES77478.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 306

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 43/206 (20%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG---- 131
           YPAS+TK+MT+ +  E        L+ +I    T   +  S LY ++ T    + G    
Sbjct: 67  YPASMTKIMTVILGIENFDD----LDEKI----TLTNEMFSGLYEQDATQAGFQPGEEVR 118

Query: 132 ----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
               +   +  S  +   A  + ISGSE  FA LM+ KA+K+GM+NT + +++GLH+ + 
Sbjct: 119 VIDLLYGAMLPSGAECCIALADTISGSEADFAELMNKKARKLGMENTHFCDSTGLHNPDH 178

Query: 188 ITTARDQAILGILLRKN-------------------FPQYYKYFSIRKFRYRNRIITNHN 228
            +T +D A+L     KN                    P    Y+S   F+  +       
Sbjct: 179 YSTVKDIAVLMKYCIKNDTFREIVETSRHSTGVTNIHPDGITYYS-TMFKNLSDPTVTGG 237

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVT 254
           K+L       G KTGYT  +G  +V+
Sbjct: 238 KIL-------GGKTGYTSEAGHCLVS 256


>gi|229105624|ref|ZP_04236258.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
 gi|228677894|gb|EEL32137.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
          Length = 301

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 81/145 (55%), Gaps = 8/145 (5%)

Query: 56  SIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQ 113
            I ID +  + + G ++DE  YPAS+ KMMT  ++ E ++      N +I V++ A  T+
Sbjct: 64  GITIDADTGEILYGKREDERSYPASIAKMMTTLLLLENVKE-----NEEITVTENAIKTE 118

Query: 114 NPSK-LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           + SK + L+       ++ +  ++  SA+ +S +  E I+GS+ +F  +M+ +AK++G +
Sbjct: 119 SQSKKIKLRAGEKLKRDEALKLMLIISADPISESIAEHIAGSKNEFVKMMNARAKELGTK 178

Query: 173 NTIYKNASGLHDKNQITTARDQAIL 197
           +  +KNASG        +  D AI+
Sbjct: 179 HATFKNASGADALGNKVSPYDIAII 203


>gi|312897437|ref|ZP_07756861.1| serine-type D-Ala-D-Ala carboxypeptidase [Megasphaera
           micronuciformis F0359]
 gi|310621498|gb|EFQ05034.1| serine-type D-Ala-D-Ala carboxypeptidase [Megasphaera
           micronuciformis F0359]
          Length = 326

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 123/277 (44%), Gaps = 24/277 (8%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEY---LQSKKLHLN 101
            E+HA+   +++++D    ++   K  DE  YP   T +MT  +  E    +    +H +
Sbjct: 29  GEIHAR---AAVLMDAQTGEVLYSKNGDEKLYPGGTTMIMTALLGAEAGDTVLDGAVHFS 85

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
             +    T   ++ + L +      T    + A++T +  D +      ++ S   F  +
Sbjct: 86  DDV----TKLDRDVAVLGISADHPVTLRNALTAMMTYTGCDAALDTAVTVAPSVADFVHM 141

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK---FR 218
           M++KA  IG  NT + N  GL D N ++TA+D A + +   +N  Q +K F+ R      
Sbjct: 142 MNDKAVAIGATNTHFTNPHGLPDANHVSTAKDLAKIAVYAMQN--QTFKSFTGRTSFVMP 199

Query: 219 YRN---RIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           Y N   + + + N+ LN  +   +GIKTG T   G  +V S    D   V  ++    S 
Sbjct: 200 YTNGGSQEVFSMNEFLNSGYKGANGIKTGATDYGGATLVASATRGDKTYVVSIL---NSD 256

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
            R   A +L+  F   +T       ++D  S+ + KK
Sbjct: 257 NRSGDA-KLLMDFAFAETTAIDAVSKEDGKSAVAEKK 292


>gi|256848581|ref|ZP_05554022.1| D-alanyl-D-alanine carboxypeptidase dacA [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256714633|gb|EEU29613.1| D-alanyl-D-alanine carboxypeptidase dacA [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 400

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 110/241 (45%), Gaps = 27/241 (11%)

Query: 54  YSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +++  ID    Q +     D+    AS++K++T+ +I   + S KL  +T++ ++   A 
Sbjct: 37  HAAFAIDAQTGQVLYNHNGDQRLAVASMSKLLTVAVIENEISSGKLKWSTKVKITSAEAK 96

Query: 113 QNPSKLY----LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            + +  Y    LK    +T +Q   A + +S +  + A       + ++F   M   AK+
Sbjct: 97  LSTASGYSNVPLKASKQYTVKQLTQAALIKSGDAATIALTRAQGRNTQQFVQQMGTMAKR 156

Query: 169 IGMQNTIYKNASGLHD---------------KNQITTARDQAILGILLRKNFPQYYKYFS 213
           IG+ N    N  GL +               +NQ+ TA+D A +   L +N+P   K   
Sbjct: 157 IGLSNYRLYNGVGLENGDMASFKLPKTAKAAENQM-TAQDVAKVARYLIQNYPAVLKITK 215

Query: 214 IRKFRYRNRIITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            R  R+  +   N N+LL       +   +DG+KTG +  +G  +V++  Y+   I+ VV
Sbjct: 216 QRTLRWDGKDYPNSNELLPGNAAAPQKVKVDGLKTGTSDKAGQCLVSTGTYQGHRIITVV 275

Query: 268 M 268
           M
Sbjct: 276 M 276


>gi|229076391|ref|ZP_04209356.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18]
 gi|228706826|gb|EEL59034.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18]
          Length = 301

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 81/145 (55%), Gaps = 8/145 (5%)

Query: 56  SIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQ 113
            I ID +  + + G ++DE  YPAS+ KMMT  ++ E ++      N +I V++ A  T+
Sbjct: 64  GITIDADTGEILYGKREDERSYPASIAKMMTTLLLLENVKE-----NEEITVTENAIKTE 118

Query: 114 NPSK-LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           + SK + L+       ++ +  ++  SA+ +S +  E I+GS+ +F  +M+ +AK++G +
Sbjct: 119 SQSKKIKLRAGEKLKRDEALKLMLIISADPISESIAEHIAGSKNEFVKMMNARAKELGTK 178

Query: 173 NTIYKNASGLHDKNQITTARDQAIL 197
           +  +KNASG        +  D AI+
Sbjct: 179 HATFKNASGADALGNKVSPYDIAII 203


>gi|330500999|ref|YP_004377868.1| D-alanyl-D-alanine endopeptidase [Pseudomonas mendocina NK-01]
 gi|328915285|gb|AEB56116.1| D-alanyl-D-alanine endopeptidase [Pseudomonas mendocina NK-01]
          Length = 293

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 121/254 (47%), Gaps = 23/254 (9%)

Query: 31  MGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMM 84
           MG +L  S++ +S      A+PK      S+++ID+   Q       + R P AS+TK+M
Sbjct: 1   MGLLLCGSLV-VSNLQAAPAQPKQELAAGSALLIDLKTGQELYSSNPDLRLPVASVTKLM 59

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEK--TYFTTEQGILALITRSAND 142
           T  ++ +     KL L+  +P++    TQ    ++ + +  +  T    +   +  S N 
Sbjct: 60  TAMVVLD----AKLPLDEVLPIT-IRDTQEMQGVFSRVRIGSEITRRDMLHLALMSSENR 114

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + +      G    F   M+ KA+ +GM N+ +   +GL ++N + TARD A++ +   
Sbjct: 115 AAASLAHHYPGGHAAFVAAMNAKARALGMHNSHFVEPTGLSEQN-VATARDLALM-VKAA 172

Query: 203 KNFPQYYKYFSIRK----FRYRNRIIT--NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTS 255
             +P  +++ +  +    FR  N  +   N N L+ K   NI+  KTG+T  +G  +V +
Sbjct: 173 NQYPLIHQFSTDSEATVAFRKPNYTLGFRNTNALVRKADWNINLSKTGFTNAAGRCLVMA 232

Query: 256 LRYKDDPIVAVVMG 269
               + P+  VV+G
Sbjct: 233 TTIANRPVAFVVLG 246


>gi|229099467|ref|ZP_04230396.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
 gi|229118482|ref|ZP_04247836.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
 gi|228665052|gb|EEL20540.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
 gi|228683963|gb|EEL37912.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
          Length = 301

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 81/145 (55%), Gaps = 8/145 (5%)

Query: 56  SIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQ 113
            I ID +  + + G ++DE  YPAS+ KMMT  ++ E ++      N +I V++ A  T+
Sbjct: 64  GITIDADTGEILYGKREDERSYPASIAKMMTTLLLLENVKE-----NEEITVTENAIKTE 118

Query: 114 NPSK-LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           + SK + L+       ++ +  ++  SA+ +S +  E I+GS+ +F  +M+ +AK++G +
Sbjct: 119 SQSKKIKLRAGEKLKRDEALKLMLIISADPISESIAEHIAGSKNEFVKMMNARAKELGTK 178

Query: 173 NTIYKNASGLHDKNQITTARDQAIL 197
           +  +KNASG        +  D AI+
Sbjct: 179 HATFKNASGADALGNKVSPYDIAII 203


>gi|94991766|ref|YP_599865.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS2096]
 gi|94545274|gb|ABF35321.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS2096]
          Length = 275

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 118/255 (46%), Gaps = 26/255 (10%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R I L+   LF +   +S   E     K++ I +D+   ++   K  +   P AS++K
Sbjct: 2   IKRLISLVVIALFFAASTVS-GEEYSVTAKHA-IAVDLESGKVLYEKDAKEVVPVASVSK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ +   KL+ ++ + +S    +       S + L ++ Y T ++ + AL+  
Sbjct: 60  LLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPLDKRKY-TVKELLSALVVN 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           +AN  + A  E I G+E KF   M  + ++ G+ +    N++GL               D
Sbjct: 119 NANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
                 A D AI+   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIFAGQTIYSYNYMLKGMPCYREGVDGL 238

Query: 241 KTGYTRNSGFNIVTS 255
             GY++ +G + V +
Sbjct: 239 FVGYSKKAGASFVAT 253


>gi|65318836|ref|ZP_00391795.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A2012]
          Length = 293

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 6/131 (4%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G  + EP+  AS+TK+MT  +  E  + K+     ++ VS  A     S +YLK      
Sbjct: 103 GKAEHEPQKIASITKIMTALLAAESGKMKE-----RVLVSNEAVRVEGSAIYLKPGQKVK 157

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKN 186
            E  +  L+ RS ND +    E + GS + F  LM+ KAK+I M++T + N  GL  D +
Sbjct: 158 LEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIRMKDTHFSNPHGLDGDGS 217

Query: 187 QITTARDQAIL 197
             ++A D A+L
Sbjct: 218 HYSSAYDMALL 228


>gi|295107786|emb|CBL21739.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162]
          Length = 307

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 98/214 (45%), Gaps = 28/214 (13%)

Query: 56  SIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++++ V   ++ G    +E  YPAS+TK+MT  +  E L+     L+ +I    T   + 
Sbjct: 53  AVLMQVRGGRVIGEINGEEQMYPASMTKIMTTIVAIENLKD----LDQEI----TLTNEM 104

Query: 115 PSKLYLKEKTYFTTEQG--------ILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
              LY ++ T    + G        +  ++  S  +   A  + I+GSE  F  LM+ KA
Sbjct: 105 FEGLYEQDATQAGFQPGETVRAIDLLYGVMLPSGAECCIALADTIAGSEADFVTLMNEKA 164

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAIL--GILLRKNFPQYYK--YFSIRKFRYRNR 222
            K+GM  T + + +GLHD N  +T +D A+L    L    F +  +  Y+S         
Sbjct: 165 AKLGMTGTNFCDTTGLHDANHYSTVKDIAVLLKYALKDDTFREIIESPYYSTPGTNIHPD 224

Query: 223 IITNHNKLLNKMHN-------IDGIKTGYTRNSG 249
            IT ++ +   + +       I G KTGYT  +G
Sbjct: 225 GITFYSTMFKNLSDTAVTDGKIMGGKTGYTGEAG 258


>gi|262402919|ref|ZP_06079479.1| murein-DD-endopeptidase [Vibrio sp. RC586]
 gi|262350418|gb|EEY99551.1| murein-DD-endopeptidase [Vibrio sp. RC586]
          Length = 315

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 27/214 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAAT 112
           S++VID+  N++      +   P AS+TK+MT  +  +     KL ++T++P++ K A  
Sbjct: 48  SALVIDLKTNEVIYSSNPDAVKPIASVTKLMTAIVTLD----AKLPMDTKLPITIKEAKE 103

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  +K  +  + +  +L  +  S N  + +      G  K F   M+ KAK +GM+
Sbjct: 104 MKGVHSRVKIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNTKAKALGMK 163

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-------------FRY 219
           NT +   +GL  KN +++ARD  +L +   K +P   +  S  K             FR 
Sbjct: 164 NTRFVEPTGLSPKN-VSSARDLVVL-LKASKKYPLLGQLSSTEKKTVTFAKPRYTLDFRN 221

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            NR++ N N        ID  KTG+T  +G  +V
Sbjct: 222 TNRLVFNDN------WKIDLTKTGFTNAAGHCLV 249


>gi|228477822|ref|ZP_04062450.1| D-alanyl-D-alanine carboxypeptidase DacA [Streptococcus salivarius
           SK126]
 gi|228250514|gb|EEK09728.1| D-alanyl-D-alanine carboxypeptidase DacA [Streptococcus salivarius
           SK126]
          Length = 432

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 30/226 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGIL 133
            S+TK++T Y++++ +    L  N+++ +S    +   +   S + L  + Y T +Q + 
Sbjct: 74  GSITKLLTAYMVYKAVDQGDLKWNSKVEISDYPFELTVSAGVSNIPLDARKY-TVKQLLD 132

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           A +  SAN  S A  E I G+E KF  +M  + K  G+ +    NASGL+          
Sbjct: 133 ATLISSANSASIALAEEIGGTESKFVDMMKAQLKDWGITDAKIVNASGLNNSYLGDNIYP 192

Query: 184 ----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----- 234
               D+    +A+D AI+   + K +P+      I K    +    N  K  N M     
Sbjct: 193 GSKSDEENTMSAKDVAIIAQHVVKEYPE---ILDITKKTEADFDGVNKLKTFNYMLKGQP 249

Query: 235 ---HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
                +DG+KTG T  +G + V         I+ V+M    +   D
Sbjct: 250 SYRKGVDGLKTGTTDLAGASFVAHSNESGMSIITVIMNADNTDTDD 295


>gi|239988485|ref|ZP_04709149.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           roseosporus NRRL 11379]
          Length = 384

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 113/263 (42%), Gaps = 30/263 (11%)

Query: 47  ELHAKPKY----------------SSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIF 90
           EL AKP Y                S+++ID     +      +P   AS+ K+MT Y+I 
Sbjct: 13  ELTAKPTYTFEGGGTELSWPGQGQSAVMID-GVGSLGSEGAQKPAPIASVAKVMTAYVIL 71

Query: 91  EYLQSKKLHLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           +    K      +I V + A  +    + S   L +    T  Q +  L+  S N+ +  
Sbjct: 72  QEHPLKGDEEGEKITVDQQAEDESKRPDESTAPLTKGQELTQRQLLQLLMIPSGNNAARL 131

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN-- 204
              + +GSE  F   M++ AK+IGM  + Y + SGL +K  ++TA DQ  L   + +N  
Sbjct: 132 LARWDAGSEDAFIDKMNDAAKEIGMTGSTYTDPSGL-EKTTVSTATDQLKLAQAVMRNDV 190

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP-- 262
           F +      +       +I  N+N LL     + GIKTG +  +G N++ S   K D   
Sbjct: 191 FREIVDMPEVEIEGIDGKIYNNNNLLLQP--GVSGIKTGSSTPAGGNLLWSANTKVDGKM 248

Query: 263 --IVAVVMGMPTSQERDQKALEL 283
             I   VMG      R   +LEL
Sbjct: 249 LWIYGAVMGQQAGTGRVYDSLEL 271


>gi|167772310|ref|ZP_02444363.1| hypothetical protein ANACOL_03687 [Anaerotruncus colihominis DSM
           17241]
 gi|167665413|gb|EDS09543.1| hypothetical protein ANACOL_03687 [Anaerotruncus colihominis DSM
           17241]
          Length = 384

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 99/207 (47%), Gaps = 13/207 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++V+D    ++   K    R P AS TK+M+  +  E  Q  +    T   V   A   
Sbjct: 49  AAVVLDAATGRVLFAKNANARLPMASTTKIMSTLLTLE--QDGQDEWFT---VDPDAIRV 103

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S + L+     T       ++  S ND + A    I+GS++ FA +M+ +A ++GM++
Sbjct: 104 EGSSMGLRVGDRVTLSALAYGMMLPSGNDAANAAAVRIAGSKEAFARMMNERAAELGMED 163

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY------RNRIITNH 227
           + +   SGL D    ++A D A+L      N P++ +  S +  +        +R  +NH
Sbjct: 164 SHFVTPSGLDDNAHYSSAYDMALLTREALSN-PRFAEICSQKSAKVCFGNPPADRWFSNH 222

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVT 254
           N+LL    +  G+KTG+T  +G  +V+
Sbjct: 223 NRLLKLYPDAAGVKTGFTDAAGRCLVS 249


>gi|153941233|ref|YP_001391113.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum F str.
           Langeland]
 gi|152937129|gb|ABS42627.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum F
           str. Langeland]
 gi|295319159|gb|ADF99536.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum F
           str. 230613]
          Length = 378

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 98/195 (50%), Gaps = 10/195 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK+MT  +  +Y       L+ +I +S+ A     S +  ++    T  + +  L+ 
Sbjct: 68  ASTTKIMTTLVALKYGD-----LDRKIEISENADKIRGSVVGYRKGEKITLRELLYGLML 122

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           RS ND + A  E I+GS + F+ LM+  A +IG+ N+ +    GL      +TA D A L
Sbjct: 123 RSGNDAAIAIAEGIAGSVEDFSKLMNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLA-L 181

Query: 198 GILLRKNFPQYYKYFS---IRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
                K +  + K  S   ++K  Y   R   N NK+L K+   DG+KTGYT  +G  +V
Sbjct: 182 ATATAKKYELFNKIVSSKDVKKEEYNFTRDYHNINKILWKIPEADGVKTGYTGKAGKCLV 241

Query: 254 TSLRYKDDPIVAVVM 268
           TS +   + I+ VV+
Sbjct: 242 TSSKINGNDIIIVVL 256


>gi|327485860|gb|AEA80266.1| Murein-DD-endopeptidase [Vibrio cholerae LMA3894-4]
          Length = 316

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 99/214 (46%), Gaps = 27/214 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAAT 112
           S++VID+  N++      +   P AS+TK+MT  +  +     KL ++ ++P++ K A  
Sbjct: 49  SALVIDLKTNEIIYSNNPDAVKPIASVTKLMTAIVTLDA----KLPMDAKLPITIKDAKE 104

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  +K  +  + +  +L  +  S N  + +      G  K F   M+ KAK +GM+
Sbjct: 105 MKGVHSRVKIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALGMK 164

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-------------FRY 219
           NT +   +GL  KN ++TARD  +L +   K +P   K  +  K             FR 
Sbjct: 165 NTRFVEPTGLSAKN-VSTARDLVVL-LKASKKYPLLGKLSATDKKTVTFSKPRYTLDFRN 222

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            NR++ N N        ID  KTG+T  +G  +V
Sbjct: 223 TNRLVHNDN------WKIDLTKTGFTNAAGHCLV 250


>gi|170755502|ref|YP_001781401.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum B1 str.
           Okra]
 gi|169120714|gb|ACA44550.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           botulinum B1 str. Okra]
          Length = 378

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 98/195 (50%), Gaps = 10/195 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK+MT  +  +Y       L+ +I +S+ A     S +  ++    T  + +  L+ 
Sbjct: 68  ASTTKIMTTLVALKYGD-----LDRKIEISENADKIRGSVVGYRKGEKITLRELLYGLML 122

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           RS ND + A  E I+GS + F+ LM+  A +IG+ N+ +    GL      +TA D A L
Sbjct: 123 RSGNDAAIAIAEGIAGSVEDFSKLMNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLA-L 181

Query: 198 GILLRKNFPQYYKYFS---IRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
                K +  + K  S   ++K  Y   R   N NK+L K+   DG+KTGYT  +G  +V
Sbjct: 182 ATATAKKYELFNKIVSSKDVKKEEYNFTRDYHNINKILWKIPEADGVKTGYTGKAGKCLV 241

Query: 254 TSLRYKDDPIVAVVM 268
           TS +   + I+ VV+
Sbjct: 242 TSSKINGNDIIIVVL 256


>gi|229522399|ref|ZP_04411815.1| murein-DD-endopeptidase [Vibrio cholerae TM 11079-80]
 gi|229340384|gb|EEO05390.1| murein-DD-endopeptidase [Vibrio cholerae TM 11079-80]
          Length = 316

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 99/214 (46%), Gaps = 27/214 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAAT 112
           S++VID+  N++      +   P AS+TK+MT  +  +     KL ++ ++P++ K A  
Sbjct: 49  SALVIDLKTNEIIYSNNPDAVKPIASVTKLMTAIVTLDA----KLPMDAKLPITIKDAKE 104

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  +K  +  + +  +L  +  S N  + +      G  K F   M+ KAK +GM+
Sbjct: 105 MKGVHSRVKIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALGMK 164

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-------------FRY 219
           NT +   +GL  KN ++TARD  +L +   K +P   K  +  K             FR 
Sbjct: 165 NTRFVEPTGLSAKN-VSTARDLVVL-LKASKKYPLLGKLSATDKKTVTFSKPRYTLDFRN 222

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            NR++ N N        ID  KTG+T  +G  +V
Sbjct: 223 TNRLVHNDN------WKIDLTKTGFTNAAGHCLV 250


>gi|312869422|ref|ZP_07729583.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus oris
           PB013-T2-3]
 gi|311095085|gb|EFQ53368.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus oris
           PB013-T2-3]
          Length = 407

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 135/280 (48%), Gaps = 40/280 (14%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQDEPRYP-AS 79
           I+R ++L   ++ L +++  + +   A  +    ++++ID +  Q+   +    + P AS
Sbjct: 3   IKRVLRL---VMVLPLVLAELTTGALASERVNARAAVMIDASTGQVLYEQNANQKLPVAS 59

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT--QNP--SKLYLKEKTYFTTEQGILAL 135
           ++K++T+ ++ + L+ + +  NT++ VS   A    +P  S + ++E   +T  + + A 
Sbjct: 60  ISKLLTVAVVHDELKQRIITANTRVNVSADVAAIASDPAYSAIGVQEGQSYTVRELLNAA 119

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------------- 182
           + +SA+  + A  E    + ++F + M  KAK+IG++N    N  GL             
Sbjct: 120 MVKSADGATLALAEADGSNLEEFNLKMDQKAKEIGLKNYTIVNPVGLTNGDLKGLKLEQY 179

Query: 183 -HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY---RNRIITNHNKLLNKMH--- 235
            ++     TA D A+L   L + +P   +  + +   +   +++ +   N  LNKM    
Sbjct: 180 ANNAENAMTANDVALLARYLVQTYPDLLQVTAQKDADFYIAKDKTVKADN--LNKMLPGE 237

Query: 236 -------NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                   IDG+KTG +  +G + V++  Y+   ++ VV+
Sbjct: 238 QYAVPGVKIDGLKTGTSAAAGPSFVSTGVYRGHRVITVVL 277


>gi|15601625|ref|NP_233256.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121586429|ref|ZP_01676217.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae 2740-80]
 gi|121726497|ref|ZP_01679761.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae V52]
 gi|147672119|ref|YP_001215209.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae O395]
 gi|153216793|ref|ZP_01950617.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae 1587]
 gi|153800546|ref|ZP_01955132.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae MZO-3]
 gi|153817027|ref|ZP_01969694.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae NCTC 8457]
 gi|153822999|ref|ZP_01975666.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae B33]
 gi|153825402|ref|ZP_01978069.1| D-alanyl-D-alanine carboxypeptidase family protein [Vibrio cholerae
           MZO-2]
 gi|153828070|ref|ZP_01980737.1| D-alanyl-D-alanine carboxypeptidase family protein [Vibrio cholerae
           623-39]
 gi|227812436|ref|YP_002812446.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae M66-2]
 gi|229505985|ref|ZP_04395494.1| murein-DD-endopeptidase [Vibrio cholerae BX 330286]
 gi|229510158|ref|ZP_04399638.1| murein-DD-endopeptidase [Vibrio cholerae B33]
 gi|229514293|ref|ZP_04403754.1| murein-DD-endopeptidase [Vibrio cholerae TMA 21]
 gi|229517711|ref|ZP_04407156.1| murein-DD-endopeptidase [Vibrio cholerae RC9]
 gi|229526636|ref|ZP_04416040.1| murein-DD-endopeptidase [Vibrio cholerae bv. albensis VL426]
 gi|229528279|ref|ZP_04417670.1| murein-DD-endopeptidase [Vibrio cholerae 12129(1)]
 gi|229605517|ref|YP_002876221.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae MJ-1236]
 gi|254224796|ref|ZP_04918412.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae V51]
 gi|254284501|ref|ZP_04959468.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae AM-19226]
 gi|254850028|ref|ZP_05239378.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae MO10]
 gi|255746384|ref|ZP_05420331.1| murein-DD-endopeptidase [Vibrio cholera CIRS 101]
 gi|262158262|ref|ZP_06029379.1| murein-DD-endopeptidase [Vibrio cholerae INDRE 91/1]
 gi|262169138|ref|ZP_06036831.1| murein-DD-endopeptidase [Vibrio cholerae RC27]
 gi|262190555|ref|ZP_06048797.1| murein-DD-endopeptidase [Vibrio cholerae CT 5369-93]
 gi|297580128|ref|ZP_06942055.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae RC385]
 gi|298499649|ref|ZP_07009455.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae MAK 757]
 gi|9658302|gb|AAF96768.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549407|gb|EAX59436.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae 2740-80]
 gi|121631092|gb|EAX63469.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae V52]
 gi|124114127|gb|EAY32947.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae 1587]
 gi|124123990|gb|EAY42733.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae MZO-3]
 gi|125622859|gb|EAZ51177.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae V51]
 gi|126512437|gb|EAZ75031.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae NCTC 8457]
 gi|126519469|gb|EAZ76692.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae B33]
 gi|146314502|gb|ABQ19042.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae O395]
 gi|148876479|gb|EDL74614.1| D-alanyl-D-alanine carboxypeptidase family protein [Vibrio cholerae
           623-39]
 gi|149740948|gb|EDM55025.1| D-alanyl-D-alanine carboxypeptidase family protein [Vibrio cholerae
           MZO-2]
 gi|150425286|gb|EDN17062.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae AM-19226]
 gi|227011578|gb|ACP07789.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae M66-2]
 gi|227015517|gb|ACP11726.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae O395]
 gi|229334641|gb|EEO00127.1| murein-DD-endopeptidase [Vibrio cholerae 12129(1)]
 gi|229336794|gb|EEO01812.1| murein-DD-endopeptidase [Vibrio cholerae bv. albensis VL426]
 gi|229345747|gb|EEO10720.1| murein-DD-endopeptidase [Vibrio cholerae RC9]
 gi|229348273|gb|EEO13231.1| murein-DD-endopeptidase [Vibrio cholerae TMA 21]
 gi|229352603|gb|EEO17543.1| murein-DD-endopeptidase [Vibrio cholerae B33]
 gi|229356336|gb|EEO21254.1| murein-DD-endopeptidase [Vibrio cholerae BX 330286]
 gi|229372003|gb|ACQ62425.1| murein-DD-endopeptidase [Vibrio cholerae MJ-1236]
 gi|254845733|gb|EET24147.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae MO10]
 gi|255736138|gb|EET91536.1| murein-DD-endopeptidase [Vibrio cholera CIRS 101]
 gi|262022419|gb|EEY41127.1| murein-DD-endopeptidase [Vibrio cholerae RC27]
 gi|262029944|gb|EEY48591.1| murein-DD-endopeptidase [Vibrio cholerae INDRE 91/1]
 gi|262033566|gb|EEY52062.1| murein-DD-endopeptidase [Vibrio cholerae CT 5369-93]
 gi|297535774|gb|EFH74608.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae RC385]
 gi|297541630|gb|EFH77681.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae MAK 757]
          Length = 316

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 99/214 (46%), Gaps = 27/214 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAAT 112
           S++VID+  N++      +   P AS+TK+MT  +  +     KL ++ ++P++ K A  
Sbjct: 49  SALVIDLKTNEIIYSNNPDAVKPIASVTKLMTAIVTLDA----KLPMDAKLPITIKDAKE 104

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  +K  +  + +  +L  +  S N  + +      G  K F   M+ KAK +GM+
Sbjct: 105 MKGVHSRVKIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALGMK 164

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-------------FRY 219
           NT +   +GL  KN ++TARD  +L +   K +P   K  +  K             FR 
Sbjct: 165 NTRFVEPTGLSAKN-VSTARDLVVL-LKASKKYPLLGKLSATDKKTVTFSKPRYTLDFRN 222

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            NR++ N N        ID  KTG+T  +G  +V
Sbjct: 223 TNRLVHNDN------WKIDLTKTGFTNAAGHCLV 250


>gi|237809560|ref|YP_002894000.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Tolumonas
           auensis DSM 9187]
 gi|237501821|gb|ACQ94414.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Tolumonas
           auensis DSM 9187]
          Length = 413

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 128/259 (49%), Gaps = 35/259 (13%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++++++ N  +M   K    R P AS+TK+MT  ++ +     KL ++  I ++     +
Sbjct: 170 AALIMNANTGRMVYGKNAARRTPIASITKLMTAMVVLD----AKLSMDQPITITNADVDR 225

Query: 114 ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
              + S+L +   T    +   LAL++ S N  + +      G +  F   M+ KA+ +G
Sbjct: 226 VKRSSSRLEIGT-TLSRYDTMWLALMS-SENRAAHSLARTYPGGKGAFIAAMNRKARALG 283

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF--RYRNRIIT--- 225
           M+NT++ +++GL +KN  +TA D A++           Y+Y  IR+      + II+   
Sbjct: 284 MRNTVFYDSTGL-NKNNTSTAADLALM-------VQAAYRYPQIRQLSTSTEHDIISASG 335

Query: 226 ------NHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM--GMPTSQER 276
                 N N L+ +   +I+  KTGY + +G  +V     ++ P+V V +  G P+ +  
Sbjct: 336 RQLHYQNSNALVREGAWDIELSKTGYIKEAGRCLVMVADVQNKPMVMVFLNAGAPSGRIN 395

Query: 277 DQKALELITSFLEKKTLKH 295
           D + L+   S+LE++ +K 
Sbjct: 396 DARNLK---SWLERQPVKQ 411


>gi|291542985|emb|CBL16095.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus bromii L2-63]
          Length = 450

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 10/129 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPSKLYLKEKTY---- 125
           D  RYPAS TK+MT  I  E +       NT+IP+ ++     +N        + +    
Sbjct: 59  DSKRYPASTTKIMTYIIAVENIADLD---NTKIPIKQSVLDVLKNTGSSLANVENHVGKS 115

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
            T    + +++  S ND +    ++I  G+   F  LM+ KAK++G +NT + N  GLHD
Sbjct: 116 MTAIDLLYSMMVPSGNDAAMVLADYIGEGNVDNFVKLMNEKAKELGCENTHFANPDGLHD 175

Query: 185 KNQITTARD 193
            +  TTARD
Sbjct: 176 PDHYTTARD 184


>gi|300854527|ref|YP_003779511.1| D-alanyl-D-alanine carboxypeptidase [Clostridium ljungdahlii DSM
           13528]
 gi|300434642|gb|ADK14409.1| D-alanyl-D-alanine carboxypeptidase precursor [Clostridium
           ljungdahlii DSM 13528]
          Length = 413

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 109/236 (46%), Gaps = 25/236 (10%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E++ K   ++I +D+  N++   K  D   YPAS TK++T  ++      K       + 
Sbjct: 32  EIYGK---AAITVDMQTNEIIYEKNADIKMYPASTTKLLTAILL-----EKNKKPGDMLT 83

Query: 106 VSKTAATQNPSKL-----YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
            +  A +Q PS L      ++     + E  +  L+  SAND++    E +S     F+ 
Sbjct: 84  YTADAKSQPPSSLNRDLHAIEVGDTMSAEDVMDGLLMYSANDLAYVVAENVSKDAPTFSD 143

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYF-----S 213
            M+ + K + ++NT +   +GLH+ N  TT  D +++    R+ F  P+  K       +
Sbjct: 144 KMNEEVKNLNLKNTHFVTPNGLHNPNHYTTPYDMSVIA---RQAFKIPRIQKAMERPANT 200

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           I+  +     I N NKLL K   I G KTGYT  +G  +V         +V VVMG
Sbjct: 201 IKTTKGLAFPIKNTNKLLGKDGCIAG-KTGYTDPAGRCLVAIYNRNGREMVGVVMG 255


>gi|282865542|ref|ZP_06274593.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           sp. ACTE]
 gi|282559586|gb|EFB65137.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           sp. ACTE]
          Length = 905

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 98/203 (48%), Gaps = 16/203 (7%)

Query: 78  ASLTKMMTLYIIFEY------LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           AS+ K+MT Y+I +        + +++ ++ Q    K AA  + S   +++   FT  Q 
Sbjct: 582 ASMAKVMTAYVILQGHPITGDQKGEQIEVDEQ--AGKEAAITDESTAAIEKGDKFTEYQM 639

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  L+  S N+V+     + +G+EK F   M+  AK +GM NT Y + SGL   + ++T 
Sbjct: 640 LQMLMIPSGNNVARLLARWDAGTEKAFIEKMNAAAKDLGMTNTTYTDPSGLK-ASTMSTP 698

Query: 192 RDQAILG-ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
            DQ  LG  ++R +  +              RI  N+  LL     ++GIKTG +  +G 
Sbjct: 699 ADQITLGKAVMRNDVFREVVDMPQADIPGVGRIYNNNYILLE--DGVNGIKTGSSTPAGG 756

Query: 251 NIV----TSLRYKDDPIVAVVMG 269
           N++    T +  K   I+  VMG
Sbjct: 757 NLLWTANTVVDGKPRRIIGAVMG 779


>gi|253756292|ref|YP_003029432.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis BM407]
 gi|251818756|emb|CAZ56593.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus suis
           BM407]
          Length = 413

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 111/226 (49%), Gaps = 29/226 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQI-----PVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           AS++K +++Y+++E L   ++ L+T +     P S T+ T+  S + L E++Y   +   
Sbjct: 56  ASISKTLSIYLVYEALAKGEITLDTMVDISDYPYSLTSNTE-LSNVNLDERSYSVRDLLN 114

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN------ 186
            +LIT S+N    A  E I+GSE  F   M  K ++ G+ +T   N SGL + +      
Sbjct: 115 ASLIT-SSNSAIIALAEKIAGSEAAFVDRMKAKVQEWGITDTKIVNVSGLDNTDLGENIY 173

Query: 187 --------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMH-- 235
                    + +A D AI+   L  ++PQ     S+  + +      + N++L +  H  
Sbjct: 174 PSSSPEDVNMFSALDVAIIARRLILDYPQVLDITSLNAYDFGGYTYYSTNQMLSDGTHAR 233

Query: 236 -NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM----GMPTSQER 276
             +DG+KTG + ++G + + + +     I+ VV+    G+ + + R
Sbjct: 234 GGVDGLKTGTSNSAGSSFLATTQQAGMRIITVVLNANDGLTSPENR 279


>gi|168184525|ref|ZP_02619189.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf]
 gi|237795257|ref|YP_002862809.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           botulinum Ba4 str. 657]
 gi|182672383|gb|EDT84344.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf]
 gi|229261495|gb|ACQ52528.1| putative D-alanyl-D-alanine carboxypeptidase DacB [Clostridium
           botulinum Ba4 str. 657]
          Length = 378

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 98/195 (50%), Gaps = 10/195 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK+MT  +  +Y       L+ +I +S+ A     S +  ++    T  + +  L+ 
Sbjct: 68  ASTTKIMTTLVALKYGD-----LDRKIEISENADKIRGSVVGYRKGEKITLRELLYGLML 122

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           RS ND + A  E I+GS + F+ LM+  A +IG+ N+ +    GL      +TA D A L
Sbjct: 123 RSGNDAAIAIAEGIAGSIEGFSKLMNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLA-L 181

Query: 198 GILLRKNFPQYYKYFS---IRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
                K +  + K  S   ++K  Y   R   N NK+L K+   DG+KTGYT  +G  +V
Sbjct: 182 ATATAKKYELFNKIVSSKDVKKEEYNFTRDYQNINKILWKIPEADGVKTGYTGKAGKCLV 241

Query: 254 TSLRYKDDPIVAVVM 268
           TS +   + I+ VV+
Sbjct: 242 TSSKINGNDIIIVVL 256


>gi|325681439|ref|ZP_08160965.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus albus 8]
 gi|324106929|gb|EGC01219.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus albus 8]
          Length = 387

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 97/197 (49%), Gaps = 13/197 (6%)

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           L K+M + +  E +++ +L L+  +  S  A +Q   +++L +    T ++ + ++   +
Sbjct: 69  LAKLMLVLLTAEKIENGELSLDDVVTASANANSQPAPQIWLDKNEKITVDELLKSITVSN 128

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AND + A  E I G+ +     M+ KA+ + M++T Y +  G+ D++ ++ A D A+L  
Sbjct: 129 ANDGAVALAEHIFGTSESAVAEMNRKAELLDMRSTTYADVCGI-DEHTLSDAADTAVLAS 187

Query: 200 LLRKN------FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG-FNI 252
            L K+      F  + +Y  +R  +     + N N+ +     I G+K   T  +G   +
Sbjct: 188 ELVKHEMLIPYFTSWLEY--VRDGKAE---LVNLNRPVRSYKGITGMKACSTSAAGECAV 242

Query: 253 VTSLRYKDDPIVAVVMG 269
           VT+ R   D  V ++ G
Sbjct: 243 VTAQRSGMDIAVVIIGG 259


>gi|323225525|gb|EGA09755.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323251307|gb|EGA35179.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
          Length = 195

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 71/140 (50%), Gaps = 10/140 (7%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  DE R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFK 93

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 94  ETDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 153

Query: 154 SEKKFAILMSNKAKKIGMQN 173
           S+  F  LM++    +G++N
Sbjct: 154 SQDAFVGLMNSYVNALGLKN 173


>gi|262173460|ref|ZP_06041137.1| murein-DD-endopeptidase [Vibrio mimicus MB-451]
 gi|261890818|gb|EEY36805.1| murein-DD-endopeptidase [Vibrio mimicus MB-451]
          Length = 317

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 27/214 (12%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAAT 112
           S++VID+  N++      D  R  AS+TK+MT  +  +     KL + T++P++ + A  
Sbjct: 50  SALVIDLKTNEVIYSSNPDAVRPIASVTKLMTAIVTLD----AKLPMETKLPITIQEARE 105

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  ++  +  + +  +L  +  S N  + +      G  K F   M++KAK +GM+
Sbjct: 106 MKGVHSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNSKAKALGMK 165

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-------------FRY 219
           NT +   +GL +KN +++ARD  +L +   K +P   +  +  K             FR 
Sbjct: 166 NTRFVEPTGLSEKN-VSSARDLVLL-LKASKKYPMLGQLSATEKKTVTFAKPRYSLDFRN 223

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            NR++ N N        ID  KTG+T  +G  +V
Sbjct: 224 TNRLVFNDN------WKIDLTKTGFTNAAGHCLV 251


>gi|146321721|ref|YP_001201432.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis 98HAH33]
 gi|145692527|gb|ABP93032.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis 98HAH33]
 gi|292559140|gb|ADE32141.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus suis GZ1]
          Length = 415

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 111/226 (49%), Gaps = 29/226 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQI-----PVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           AS++K +++Y+++E L   ++ L+T +     P S T+ T+  S + L E++Y   +   
Sbjct: 58  ASISKTLSIYLVYEALAKGEITLDTMVDISDYPYSLTSNTE-LSNVNLDERSYSVRDLLN 116

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN------ 186
            +LIT S+N    A  E I+GSE  F   M  K ++ G+ +T   N SGL + +      
Sbjct: 117 ASLIT-SSNSAIIALAEKIAGSEAAFVDRMKAKVQEWGITDTKIVNVSGLDNTDLGENIY 175

Query: 187 --------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMH-- 235
                    + +A D AI+   L  ++PQ     S+  + +      + N++L +  H  
Sbjct: 176 PGSSPEDVNMFSALDVAIIARRLILDYPQVLDITSLNAYDFGGYTYYSTNQMLSDGTHAR 235

Query: 236 -NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM----GMPTSQER 276
             +DG+KTG + ++G + + + +     I+ VV+    G+ + + R
Sbjct: 236 GGVDGLKTGTSNSAGSSFLATTQQAGMRIITVVLNANDGLTSPENR 281


>gi|152977277|ref|YP_001376794.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152026029|gb|ABS23799.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH
           391-98]
          Length = 279

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 79/143 (55%), Gaps = 4/143 (2%)

Query: 56  SIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
            I ID +  ++  G ++DE  YPAS+ K+MT  ++ E ++  +    T+  + KT +   
Sbjct: 42  GITIDADTGEILYGKREDERSYPASIAKIMTTILLLENVKKDEEITITENAI-KTESQSK 100

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
             KL+  EK     ++ +  ++  SA+ VS +  E I+GS+++F  +M+ +AK++G ++ 
Sbjct: 101 KIKLHAGEK--LKRDEALKLMLIISADPVSESIAEHIAGSKEEFVKMMNTRAKELGTKHA 158

Query: 175 IYKNASGLHDKNQITTARDQAIL 197
            +KNASG        +  D AIL
Sbjct: 159 TFKNASGADALGNKVSPYDIAIL 181


>gi|325689091|gb|EGD31099.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK115]
          Length = 422

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 121/277 (43%), Gaps = 41/277 (14%)

Query: 31  MGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQDE--PRYPASLTKM 83
           M ++    ++++ + +   A   Y     S++ +D    ++  +++D   P    S+T +
Sbjct: 1   MKRLFLCFLVLVGLTASKVAADDYNIAAKSAMAVDATSGKIL-YEKDANTPIEVGSITNL 59

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFTTEQGILALITRS 139
           +T+Y+++E +    L  +T + +S  A   T NP  S + L+ K Y   +  I A +  S
Sbjct: 60  LTVYLVYEAIDRGDLTADTYVDISDYAYNLTSNPNISNVPLEAKRY-KVKDLIAASLMSS 118

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------------- 183
           AN  + A  E + GSE+ F  +M  K K+ G+++    N++GL+                
Sbjct: 119 ANSATIALAEKVGGSEENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETDYTAS 178

Query: 184 --------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
                   D     +A D A++   L  +FPQ  +  S    +     + N+N +L    
Sbjct: 179 ASTAKKSKDTENKFSAYDLAVISRHLIMDFPQVTEITSKSTAKIAGTSLENYNFMLENQS 238

Query: 236 N----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N    +DG+K G +   G + V +       ++ VV+
Sbjct: 239 NFRSGVDGLKAGSSEKGGSSFVATTTENGIRMITVVL 275


>gi|229082256|ref|ZP_04214719.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
 gi|228700688|gb|EEL53211.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
          Length = 279

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 93/178 (52%), Gaps = 15/178 (8%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    + ID N  ++  G ++DE  YPAS+ 
Sbjct: 9   VMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDANTGEILYGKREDERSYPASIA 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 69  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 123

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        +  D AI+
Sbjct: 124 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAII 181


>gi|118348894|ref|XP_001007920.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila]
 gi|89289687|gb|EAR87675.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila SB210]
          Length = 328

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 102/245 (41%), Gaps = 47/245 (19%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHL-NTQIPVSKTAATQNPSKLYLKEKT 124
           + G  Q+     ASLTKMMT  ++  + +  ++ + N Q  VS+ A+    +   LK   
Sbjct: 30  ICGANQNMQLQIASLTKMMTYIVVLRFCKKHQIDIDNLQFVVSRNASAILGTSSGLKVGD 89

Query: 125 YFTTEQGILALITRSANDVSTAFGEFI--------------------------------- 151
             +    +  L+  S ND +    E I                                 
Sbjct: 90  QISIRDLLFCLMLPSGNDAALCLAENIGSLLYKMQKGLVKSAYVIRNLNILNIQNESTAI 149

Query: 152 -SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG--ILLRKNFPQY 208
            S S   F   M+N A+++G+  T + N  GLHDK  +++A+D AIL   I+    F   
Sbjct: 150 QSCSVMSFVNEMNNMAQELGLNETKFSNPHGLHDKVNVSSAKDMAILTREIMKEDKFTLQ 209

Query: 209 YKYFSIRKFRYRNRI--------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
                  +F  +N+I        + N NKLL K     G+KTGYT ++G   + SL  + 
Sbjct: 210 LCQAKSYQFEVKNQIDNTCRQINLVNTNKLLEKPGYF-GMKTGYTNSAG-GCLASLFKQY 267

Query: 261 DPIVA 265
           D I+A
Sbjct: 268 DKIMA 272


>gi|253752532|ref|YP_003025673.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis SC84]
 gi|253754358|ref|YP_003027499.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis P1/7]
 gi|251816821|emb|CAZ52465.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus suis
           SC84]
 gi|251820604|emb|CAR47361.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus suis
           P1/7]
 gi|319758942|gb|ADV70884.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis JS14]
          Length = 413

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 111/226 (49%), Gaps = 29/226 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQI-----PVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           AS++K +++Y+++E L   ++ L+T +     P S T+ T+  S + L E++Y   +   
Sbjct: 56  ASISKTLSIYLVYEALAKGEITLDTMVDISDYPYSLTSNTE-LSNVNLDERSYSVRDLLN 114

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN------ 186
            +LIT S+N    A  E I+GSE  F   M  K ++ G+ +T   N SGL + +      
Sbjct: 115 ASLIT-SSNSAIIALAEKIAGSEAAFVDRMKAKVQEWGITDTKIVNVSGLDNTDLGENIY 173

Query: 187 --------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMH-- 235
                    + +A D AI+   L  ++PQ     S+  + +      + N++L +  H  
Sbjct: 174 PGSSPEDVNMFSALDVAIIARRLILDYPQVLDITSLNAYDFGGYTYYSTNQMLSDGTHAR 233

Query: 236 -NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM----GMPTSQER 276
             +DG+KTG + ++G + + + +     I+ VV+    G+ + + R
Sbjct: 234 GGVDGLKTGTSNSAGSSFLATTQQAGMRIITVVLNANDGLTSPENR 279


>gi|226949097|ref|YP_002804188.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           botulinum A2 str. Kyoto]
 gi|226843082|gb|ACO85748.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           botulinum A2 str. Kyoto]
          Length = 378

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 98/195 (50%), Gaps = 10/195 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK+MT  +  +Y       L+ +I +S+ A     S +  ++    T  + +  L+ 
Sbjct: 68  ASTTKIMTTLVALKYGD-----LDRKIEISENADKIRGSVVGYRKGEKITLRELLYGLML 122

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           RS ND + A  E I+GS + F+ LM+  A +IG+ N+ +    GL      +TA D A L
Sbjct: 123 RSGNDAAIAIAEGIAGSIEGFSKLMNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLA-L 181

Query: 198 GILLRKNFPQYYKYFS---IRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
                K +  + K  S   ++K  Y   R   N NK+L K+   DG+KTGYT  +G  +V
Sbjct: 182 ATATAKKYELFNKIVSSKDVKKEEYNFTRDYQNINKILWKIPEADGVKTGYTGKAGKCLV 241

Query: 254 TSLRYKDDPIVAVVM 268
           TS +   + I+ VV+
Sbjct: 242 TSSKINGNDIIIVVL 256


>gi|309808134|ref|ZP_07702046.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners
           LactinV 01V1-a]
 gi|308168603|gb|EFO70709.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners
           LactinV 01V1-a]
          Length = 425

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 110/244 (45%), Gaps = 29/244 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK--TAA 111
           ++I+ D+   Q+   K  + + P AS++K++T+Y+  + +++ KL   T++  S+   A 
Sbjct: 64  AAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAIKAGKLSWQTKVMPSREAIAV 123

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           ++NP  S + LK    +T  Q   A + +SAN  +      ++GS KKF  +M  +    
Sbjct: 124 SKNPEYSNVPLKLGHQYTIRQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRKQLLDW 183

Query: 170 GMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
            +        SGL               D     +A D  IL   L   FPQ      I 
Sbjct: 184 HISQAQIVTPSGLPNFTLGRDADSTKNADAENELSASDMGILIKHLLLEFPQVLDTTRIS 243

Query: 216 KFRY---RNRI-ITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           K  +   RN   + N N +L      N+ + +DG+KTG T  +G  + ++L      IV 
Sbjct: 244 KLNFPDGRNTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGACLASTLVKNGRRIVT 303

Query: 266 VVMG 269
           V++G
Sbjct: 304 VIIG 307


>gi|269836468|ref|YP_003318696.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785731|gb|ACZ37874.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 386

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 90/232 (38%), Gaps = 36/232 (15%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY- 119
           V    +     D P  PAS TKM+T  I+ ++       L+  I       T  P  L  
Sbjct: 58  VTGATLAAVNPDMPYPPASTTKMLTALIVRQHAA-----LDEVI-------TIEPGDLVD 105

Query: 120 --------LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--------SEKKFAILMS 163
                   L+          +  L+  S  D + A    +              F   M+
Sbjct: 106 EVIYAHVGLRAGDRVAVRDLLAGLLVPSGGDAARALARVVGARLDPAATNPRAAFVAEMN 165

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN------FPQYYKYFSIRKF 217
             A+++GM++T + N  G     Q +TARD AILG  L K+        Q     S++  
Sbjct: 166 RVARRLGMRSTHFVNPDGRDAPGQRSTARDLAILGAALLKDPFLADVVAQPVTTISVKGP 225

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
             R+  + + N LL ++  + GIKTG T   G N+V      D  ++ V +G
Sbjct: 226 NARDITLWSTNHLLGEL-GVHGIKTGTTAEDGENLVAVAWRGDHQVITVTLG 276


>gi|309803471|ref|ZP_07697565.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners
           LactinV 11V1-d]
 gi|308164480|gb|EFO66733.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners
           LactinV 11V1-d]
          Length = 425

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 112/244 (45%), Gaps = 29/244 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK--TAA 111
           ++I+ D+   Q+   K  + + P AS++K++T+Y+  + +++ KL   T++  S+   A 
Sbjct: 64  AAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAIKAGKLSWQTKVMPSREAIAV 123

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           ++NP  S + L+    +T +Q   A + +SAN  +      ++GS KKF  +M N+    
Sbjct: 124 SKNPEYSNVPLQLGHQYTIKQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRNQLLDW 183

Query: 170 GMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
            +        SGL               D     +A D  IL   L   FPQ  +   I 
Sbjct: 184 HISQAQIVTPSGLPNFTLGRDADSSKNADAENELSASDMGILIKHLLLEFPQVLETTRIA 243

Query: 216 KFRY----RNRIITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           K  +    +   + N N +L      N+ + +DG+KTG T  +G  + ++L      IV 
Sbjct: 244 KLDFLDGRKTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGACLASTLVKNGRRIVT 303

Query: 266 VVMG 269
           V++G
Sbjct: 304 VIIG 307


>gi|75760329|ref|ZP_00740377.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218900160|ref|YP_002448571.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           G9842]
 gi|228903511|ref|ZP_04067635.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           4222]
 gi|74492183|gb|EAO55351.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218545764|gb|ACK98158.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           G9842]
 gi|228856132|gb|EEN00668.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           4222]
          Length = 301

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 94/178 (52%), Gaps = 15/178 (8%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +PK +    + ID +  + + G ++DE  YPAS+ 
Sbjct: 31  VMIATLFTGMIFFSYAQRQQAVRADQPKITGQYGVTIDADTGEILYGKREDERSYPASIA 90

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 91  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 145

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        +  D AI+
Sbjct: 146 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADAIGNKVSPYDIAII 203


>gi|206970320|ref|ZP_03231273.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH1134]
 gi|206734897|gb|EDZ52066.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH1134]
          Length = 279

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 93/178 (52%), Gaps = 15/178 (8%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    + ID N  ++  G ++DE  YPAS+ 
Sbjct: 9   VMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDANTGEILYGKREDERSYPASIA 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 69  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 123

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        +  D AI+
Sbjct: 124 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADAIGNKVSPYDIAII 181


>gi|229181304|ref|ZP_04308634.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
 gi|228602197|gb|EEK59688.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
          Length = 279

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 93/178 (52%), Gaps = 15/178 (8%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    + ID N  ++  G ++DE  YPAS+ 
Sbjct: 9   VMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDANTGEILYGKREDERSYPASIA 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 69  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRPGEKLKRDEALKLMLIIS 123

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        +  D AI+
Sbjct: 124 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADAIGNKVSPYDIAII 181


>gi|229062677|ref|ZP_04199986.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
 gi|228716647|gb|EEL68344.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
          Length = 290

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 79/145 (54%), Gaps = 8/145 (5%)

Query: 56  SIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--AT 112
            + ID +  + + G ++DE  YPAS+ KMMT  ++ E ++      + +I V++ A    
Sbjct: 53  GMTIDADTGKILYGKREDERSYPASIAKMMTTLLLLENVKE-----DEEITVTENAIKTE 107

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              +K+ L+       ++ +  ++  SA+ ++ +  E I+GS++KF  +M+ +AK+IG +
Sbjct: 108 SQSAKIKLRAGEKLKRDEALKLMLIISADPIAESIAEHIAGSKEKFVKMMNARAKEIGTK 167

Query: 173 NTIYKNASGLHDKNQITTARDQAIL 197
           +  +KNASG        +  D AI+
Sbjct: 168 HATFKNASGADALGNKVSPYDIAII 192


>gi|302560107|ref|ZP_07312449.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus
           Tu4000]
 gi|302477725|gb|EFL40818.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus
           Tu4000]
          Length = 471

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 9/207 (4%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P      +DV+     G   ++   P AS+ K+MT Y+I      K       I V +TA
Sbjct: 122 PAKGQAALDVDGIGTFGSSGEQKPVPIASVAKVMTAYLILRDHPLKSGADGPTIDVDQTA 181

Query: 111 ATQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
             Q    + S + +      +  + + A++  SAN+V+     + +GSEK F   M+  A
Sbjct: 182 EKQSSAGDESTVNVTAGDKISQREALEAILIASANNVARLVARWDAGSEKAFVEKMNEAA 241

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-RYRNRIIT 225
           K +GM +T Y + SGL++   ++TA DQ  L     +  P + +  ++ ++  Y+     
Sbjct: 242 KDLGMTDTTYTDPSGLNN-TTVSTAVDQVKLAKAAMEQ-PAFREVAAMMEYIDYKGVKHG 299

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           N N+L+   +N+ GIKTG T ++  N+
Sbjct: 300 NWNRLVGH-NNVVGIKTGTTTSALGNL 325


>gi|170761736|ref|YP_001787179.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408725|gb|ACA57136.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 378

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 97/194 (50%), Gaps = 8/194 (4%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK+MT  +  +Y       L+ +I +S+ A     S +  ++    T  + +  L+ 
Sbjct: 68  ASTTKIMTTLVALKYGD-----LDRKIEISENADKIRGSVVGYRKGEKITLRELLYGLML 122

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           RS ND + A  E I+GS + F+ LM+  A +IG+ N+ +    GL      +TA D A+ 
Sbjct: 123 RSGNDAAIAIAEGIAGSVEGFSKLMNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLALA 182

Query: 198 GILLRKN--FPQYYKYFSIRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
               +K   F +      ++K  Y   R   N NK+L K+   DG+KTGYT  +G  +VT
Sbjct: 183 TATAKKYELFNEIVSSKDVKKEEYNFTRDYHNINKILWKIPEADGVKTGYTGKAGKCLVT 242

Query: 255 SLRYKDDPIVAVVM 268
           S +   + I+ VV+
Sbjct: 243 SSKINGNDIIIVVL 256


>gi|229094119|ref|ZP_04225203.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
 gi|228689331|gb|EEL43150.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
          Length = 301

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 88/162 (54%), Gaps = 15/162 (9%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    I ID +  + + G ++DE  YPAS+ 
Sbjct: 31  VMIATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIA 90

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      N +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 91  KMMTTLLLLENVKE-----NEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 145

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG
Sbjct: 146 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASG 187


>gi|313124231|ref|YP_004034490.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312280794|gb|ADQ61513.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 428

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 113/252 (44%), Gaps = 29/252 (11%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHL-NTQIPVSKTAA- 111
           ++I +D +  Q+   K    PR  AS+TK++T+Y+  + ++  KL   +T  P +  A  
Sbjct: 48  AAIAVDADSGQILYAKNATTPRQIASMTKLVTVYLTLQAIKQGKLSWTSTAKPTAAIAKI 107

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +QN   S + L     +T ++   A +  SAN  +    + +SG +  F   M       
Sbjct: 108 SQNTEYSNVPLTSSHAYTIKELYRATLIESANGAAMTLAQAVSGDQVTFVKKMRKLLTSW 167

Query: 170 GMQNTIYKNASGLHDKNQIT--------------TARDQAILGILLRKNFPQYYKYFSIR 215
           G+++    NA GL + N  +              +A D AI+   L K+FP+  +  SI 
Sbjct: 168 GIKDAKIYNACGLANGNLGSAAYPGVGKDVENEMSATDMAIVCQKLLKDFPEVLQTTSIT 227

Query: 216 KFRYRNRI----ITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              + +      +TN N +L  + +      +DG+KTG T  +G     +++     I+ 
Sbjct: 228 SATFSSGSTQSQMTNWNWMLKGLSSYYSDLPVDGLKTGTTDKAGACFAGTVKKNGHRIIT 287

Query: 266 VVMGMPTSQERD 277
           VV+G   +  +D
Sbjct: 288 VVLGAKHANSQD 299


>gi|253577898|ref|ZP_04855170.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850216|gb|EES78174.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 356

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 93/218 (42%), Gaps = 26/218 (11%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPAS+TK+MT  +    LQS KL+    I                      T +Q +  L
Sbjct: 131 YPASITKIMTAMLA---LQSGKLNDTVTITQDNVTLEDGSQVCGFVAGDQVTLDQLLHCL 187

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S ND ++A  E++ GS + F  +M++ A K+G   T + N  GL D+N  TT  D  
Sbjct: 188 LVYSGNDAASAIAEYVGGSTENFVQMMNDYAAKLGCTGTHFSNPHGLQDENHYTTPYD-- 245

Query: 196 ILGILLRKNF-----------PQYYKYFSIRKFRYRNRIITNHNKLLN------KMHNID 238
            + ++L + F           P Y   ++      ++  +T  +  L       K   I 
Sbjct: 246 -IYLMLNEAFTYPEFTEITELPSYTVTYTGSDGTEKSTTLTATDHYLTGEATAPKDVTIL 304

Query: 239 GIKTGYTRNSG--FNIVTSLRYKDDPIVAVVMGMPTSQ 274
           G KTG T  +G    I+T   Y     V++VMG  T +
Sbjct: 305 GGKTGTTEVAGNCLAILTQNAYG-KTFVSIVMGAATKE 341


>gi|254468773|ref|ZP_05082179.1| penicillin-binding protein 7 [beta proteobacterium KB13]
 gi|207087583|gb|EDZ64866.1| penicillin-binding protein 7 [beta proteobacterium KB13]
          Length = 285

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 22/211 (10%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYF 126
           K +E    ASLTK+MT  ++ +      L LN ++ ++K    +     S+L+L  +   
Sbjct: 54  KANEKSAIASLTKLMTAMVLID----SNLDLNEKVKITKKDQDRIKGTKSRLWLGSE--L 107

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           T ++ +   +  S N  ++A      G +K F   M+ KAK++GM +T + + +GL DKN
Sbjct: 108 TRKELLSIALIASDNRAASALSNSYPGGKKAFVQAMNVKAKQLGMDDTSFADPTGL-DKN 166

Query: 187 QITTARDQAILG-------ILLRKNFPQYYK-YFSIRKFRYRNRIITNHNKLLNK-MHNI 237
            I+TA D   +        I+   +   YY+ Y   +K R       N N L+ + + +I
Sbjct: 167 NISTAIDLVKMTQAAQQYPIIRELSTSSYYEAYIKNKKIRLN---YNNTNLLVRQGLWDI 223

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           D  KTGY R +G  ++   +  D PI+ V +
Sbjct: 224 DISKTGYIREAGKCLIMQTKVMDKPIIMVFL 254


>gi|86739377|ref|YP_479777.1| Serine-type D-Ala-D-Ala carboxypeptidase [Frankia sp. CcI3]
 gi|86566239|gb|ABD10048.1| Serine-type D-Ala-D-Ala carboxypeptidase [Frankia sp. CcI3]
          Length = 551

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 16/184 (8%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS  K++T   +   L   ++     + V + A   + +K+ L     +T      A++
Sbjct: 128 PASTMKILTALTVLPGLPPDRV-----VTVDENAPRVDGTKVGLVPGVGYTVRDLATAML 182

Query: 137 TRSANDVSTAFGEFISGSEKKFAIL--MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
             S ND + A    +  S    A+L  M+  A+ +G  +T+  + +GL    Q+T+  D 
Sbjct: 183 ISSGNDATMAL---VQASGGTPAVLQRMNALARSLGATDTVAGDPTGLDSPGQVTSVHDL 239

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKMHNIDGIKTGYTRNSG 249
           A+LG     N P    Y +I +     R      I NHN LL       G+K GYT  +G
Sbjct: 240 AVLGRAALDN-PTVRGYLTIPRASLAGRGSTRFEIQNHNALLRSYEGTIGVKNGYTIAAG 298

Query: 250 FNIV 253
              V
Sbjct: 299 ATFV 302


>gi|325679044|ref|ZP_08158638.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus
           albus 8]
 gi|324109168|gb|EGC03390.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus
           albus 8]
          Length = 359

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 123/262 (46%), Gaps = 18/262 (6%)

Query: 30  LMGKILFLSIIMISM-ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLY 87
           ++  +L  SI  I++ A EL      ++IV +   +++   K  + + P AS TK+M+  
Sbjct: 14  VLALMLIFSISRINVSAEELPDVSAKAAIVYNGATDEVLFEKNADEQLPMASTTKIMSAL 73

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           I+ E     +  L+ +  V   A     S + L++    +       ++  S ND + A 
Sbjct: 74  IVLE-----QNDLDERFIVDSQAIMTEGSSMGLQKGDEVSLRDLACGMLLPSGNDAANAA 128

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD--KNQITTARDQAILGILLRKNF 205
              ++GS   F  LM+ +A ++G+ +T +   SGL D   +  +TARD A L     K+ 
Sbjct: 129 AVRVAGSVDAFVELMNRRAAEMGLFDTHFVTPSGLDDYTDDHYSTARDMAKLAAEAMKD- 187

Query: 206 PQYYKYFSIRKFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
             +    S++K +        +R + N NKLL K+  I GIKTG+T  +   +V+S   +
Sbjct: 188 QNFRDICSLQKAKVFFGDPPYDRWLINSNKLL-KISGITGIKTGFTDKARRCLVSSCMRE 246

Query: 260 DDPIVAVVMGMPTSQERDQKAL 281
              ++ V +  P    RD  AL
Sbjct: 247 GCELICVTLNDPDDW-RDHMAL 267


>gi|169825632|ref|YP_001695790.1| D-alanyl-D-alanine carboxypeptidase [Lysinibacillus sphaericus
           C3-41]
 gi|168990120|gb|ACA37660.1| D-alanyl-D-alanine carboxypeptidase precursor [Lysinibacillus
           sphaericus C3-41]
          Length = 443

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 116/243 (47%), Gaps = 30/243 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----K 108
           ++I+ID +  ++  ++Q  D     AS+TKMMT Y++ + + +  +  + +  V+    +
Sbjct: 41  AAILIDADSGKIL-YEQNADTSLGIASMTKMMTEYLLLDAIDAGTVKWDQEYHVTDYTYR 99

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            +  +  S + L+    +T  +   A+   SAN  + A  E I+G+E +F  LM+ KA++
Sbjct: 100 MSQNRALSNVPLRRDGSYTIRELYEAMAIYSANAATVAIAETIAGTETEFLKLMNKKAEE 159

Query: 169 IGMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSI 214
           +G++   + NA+GL++ +               +  A+  A L   L K+ P+  +   I
Sbjct: 160 LGLEGYKFVNATGLNNADLFGMHPAGTGPEDENVMPAKYVAKLAYHLLKDHPKVLETSQI 219

Query: 215 RKFRYRNRI-----ITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            K  +R        ++N N +L  +      +DG+KTG T  +G     +       ++A
Sbjct: 220 TKKTFREGTEDAIEMSNWNFMLPGLVFEYQGVDGLKTGTTNFAGHCFTGTAERNGTRLIA 279

Query: 266 VVM 268
           VVM
Sbjct: 280 VVM 282


>gi|324328943|gb|ADY24203.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 279

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 93/178 (52%), Gaps = 15/178 (8%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    I ID +  ++  G ++DE  YPAS+ 
Sbjct: 9   VMMATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIA 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 69  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 123

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        +  D AI+
Sbjct: 124 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAII 181


>gi|302552148|ref|ZP_07304490.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces viridochromogenes
           DSM 40736]
 gi|302469766|gb|EFL32859.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces viridochromogenes
           DSM 40736]
          Length = 930

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 94/181 (51%), Gaps = 8/181 (4%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP----SKLYLKEKTYFTTEQGIL 133
           AS+ K+MT Y+I      K      +I + + A  Q+     S + + +    T  + + 
Sbjct: 608 ASVAKVMTAYLILREHPLKSGAPGPKIEIDQAAEDQSDAGQESTVDVTKGDKITQREALE 667

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           +++  SAN+++     + +GSEK F   M++ AK +GM+NT Y + SGL++   ++TA D
Sbjct: 668 SILIASANNIARLLARWDAGSEKSFVQKMNDAAKDLGMKNTTYTDPSGLNNTT-VSTAVD 726

Query: 194 QAILGILLRKNFPQYYKYFSIRKF-RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           Q  L     +  P + +  ++  +  Y+     N N+L+   +++ GIKTG T ++  N+
Sbjct: 727 QVKLAKAAMQQ-PAFREVAAMMSYVDYKGTKHDNWNRLVG-YNDVTGIKTGTTTSALGNL 784

Query: 253 V 253
           V
Sbjct: 785 V 785


>gi|331001799|ref|ZP_08325321.1| hypothetical protein HMPREF0491_00183 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412773|gb|EGG92156.1| hypothetical protein HMPREF0491_00183 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 327

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPAS TK+MT  +  +Y     L     +P     +    S   L      T ++ +  L
Sbjct: 102 YPASTTKVMTALVALKY---GNLSDEITVPEESVISEAGASLAGLNPGDKLTLDELLYGL 158

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           +  S ND + A    I GS   F  +M+++AK+IG  +T + NA GL D+N  TTA D
Sbjct: 159 MLPSGNDAANAIAVHIGGSVDNFVRMMNDEAKRIGAVDTNFMNAHGLSDENHYTTAYD 216


>gi|145504310|ref|XP_001438127.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124405288|emb|CAK70730.1| unnamed protein product [Paramecium tetraurelia]
          Length = 319

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 114/270 (42%), Gaps = 32/270 (11%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNT-QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           ASLTK+MT Y   +  +   L  N   I + + A     +  +L+     +  + + AL+
Sbjct: 50  ASLTKIMTAYTAIQLCEDLNLDYNEINIRIPRIATQIGGTSAFLRRDDILSLVELLYALM 109

Query: 137 TRSANDVSTA----FGEFISGSEK-------------------------KFAILMSNKAK 167
             S ND + +    FG  ++   K                         +F   M+  A 
Sbjct: 110 LPSGNDAAISIALHFGSILNTQRKQKIASYITCDTIQGFYDDTQMSNMNRFVRQMNENAM 169

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           K+GM+++ + N  GL  K   +TA D   +     K  P   +  + + F  RN    N 
Sbjct: 170 KLGMRDSQFSNPHGLSSKANKSTASDMCRMSSAYLK-IPVLKQICNSKSFSCRNYEWFNT 228

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           N+LL+   N +GIKTG T N+G  +  S       I+ V++G    + R ++  +LI   
Sbjct: 229 NQLLH-FENYNGIKTGITPNAGACLAVSYESVLGSIIVVLIGAKDQKRRFEETDKLINWV 287

Query: 288 LEKKTLKHQQTHRKDNLSSTSLKKSLMIKK 317
             + +L   +T      +++S  +S +IKK
Sbjct: 288 SREYSLYFNKTMYPPPRTASSKGRSFIIKK 317


>gi|309810092|ref|ZP_07703938.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners SPIN
           2503V10-D]
 gi|308169591|gb|EFO71638.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners SPIN
           2503V10-D]
          Length = 425

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 115/244 (47%), Gaps = 29/244 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK--TAA 111
           ++I+ D+   Q+   K  + + P AS++K++T+Y+  + +++ KL   T++  S+   A 
Sbjct: 64  AAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAIKAGKLSWQTKVMPSREAIAV 123

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           ++NP  S + L+    +T  Q   A + +SAN  +      ++GS KKF  +M  +    
Sbjct: 124 SKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRKQLLDW 183

Query: 170 GMQNTIYKNASGL--------HDKNQITTARDQ---AILGILLRK---NFPQYYKYFSIR 215
            +        SGL         D N+   A ++     +GIL++     FPQ      I 
Sbjct: 184 HISQAQIVTPSGLPNFTLGRDADSNKNADAENELSAGDMGILIKHLLLEFPQVLDTTRIS 243

Query: 216 KFRY---RNRI-ITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           K  +   RN   + N N +L      N+ + +DG+KTG T  +G  + ++L      IV 
Sbjct: 244 KLNFPDGRNTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGACLASTLVKNGRRIVT 303

Query: 266 VVMG 269
           V++G
Sbjct: 304 VIIG 307


>gi|116629129|ref|YP_814301.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus gasseri ATCC
           33323]
 gi|282851112|ref|ZP_06260486.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus gasseri
           224-1]
 gi|116094711|gb|ABJ59863.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus gasseri ATCC
           33323]
 gi|282558064|gb|EFB63652.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus gasseri
           224-1]
          Length = 308

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 17/168 (10%)

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
           +T ++   A + +SAN+ +      +SG+E  F   M  +A K  + N  +    GL +K
Sbjct: 128 YTVKELYDAALIKSANNAARMLAIAVSGNETNFLNQMRQQANKWKLHNVKFVTVDGLPEK 187

Query: 186 NQ----ITT-------ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            +    +TT       A D AI+   L  ++P+      + K  +RN ++TN NK+LN +
Sbjct: 188 KKNFLGMTTTIENKMSANDMAIIARKLVTDYPEVLNTTKVAKTYFRNTLMTNSNKMLNGL 247

Query: 235 HN------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
            +      +DG+KTG T  +G     ++   +  ++ V++G     ER
Sbjct: 248 SDYDPNYPVDGLKTGTTDGAGSCFTCTVDKNNKRVITVILGAQNDNER 295


>gi|163813991|ref|ZP_02205384.1| hypothetical protein COPEUT_00143 [Coprococcus eutactus ATCC 27759]
 gi|158450685|gb|EDP27680.1| hypothetical protein COPEUT_00143 [Coprococcus eutactus ATCC 27759]
          Length = 425

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 102/222 (45%), Gaps = 24/222 (10%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           +L+AK   ++++ID     +   K  +   P AS TK++T  +  E       +L   + 
Sbjct: 61  QLYAK---NAVLIDGETGDILYEKNADAHRPNASTTKILTCILALECG-----NLEDTVA 112

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           VS  AA Q   +L  +E   +T E  + A++  S ND +    E I GS + FA +M+ K
Sbjct: 113 VSSYAAKQPEVRLGAQEGESYTLEDMLYAMMLESYNDTAVMIAEHIGGSMEVFADMMNRK 172

Query: 166 AKKIGMQNTIYKNASGLHDKNQI----TTARDQAIL---GILLRKNFPQYYKY------- 211
           A++IG  +T +   +GL  +++     T+A D A +    IL+      + K        
Sbjct: 173 AREIGCHSTYFITPNGLDAQDESGGHGTSADDLARIMRYCILVSPERDMFLKITQSSSHT 232

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
           FS  K   R     NHN  LN        KTG+T ++G+  V
Sbjct: 233 FS-EKSGSRTFSCVNHNAFLNMSSEALSGKTGFTCDAGYCYV 273


>gi|298249991|ref|ZP_06973795.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
           racemifer DSM 44963]
 gi|297547995|gb|EFH81862.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
           racemifer DSM 44963]
          Length = 321

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 111/251 (44%), Gaps = 26/251 (10%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           K + +V D   N +   K  E R P AS TK+MT  +  +     K  LN  + + + A 
Sbjct: 62  KIAYLVDDDTGNVLVNVKGRE-RVPMASTTKIMTAILTID-----KADLNQVVTIKQDAV 115

Query: 112 TQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
            +    N S   L        +  + AL+  S +D +TA  + ++GS+ +F  +M+  AK
Sbjct: 116 DEAKVHNGSNAQLVIGDQIRLKDLLYALMLPSGDDAATAIADSVAGSQTQFVTMMNAYAK 175

Query: 168 KIGMQNTIYKNASGL--------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-- 217
           ++ +QNT Y NA GL         D N  TT  D   L     +N P + +   ++K+  
Sbjct: 176 QLKLQNTHYINADGLTYEGKDGKPDPNHYTTGEDLVKLTRYALRN-PLFAQIVQLQKYVL 234

Query: 218 ----RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                +        + +L+    + G+KTG+T  +G+ +V S       +V  V+     
Sbjct: 235 PASGVHHAYTWETTDTMLSTYAGLTGVKTGFTGEAGYCLVFSAYSSGHRLVGAVLDAKDE 294

Query: 274 QERDQKALELI 284
           +ER + A  L+
Sbjct: 295 EERFKDASSLL 305


>gi|78186778|ref|YP_374821.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium luteolum DSM
           273]
 gi|78166680|gb|ABB23778.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium luteolum DSM
           273]
          Length = 301

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 99/202 (49%), Gaps = 17/202 (8%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK++T  I    L+S KL  +  + +S  A    P+K   +          + A +
Sbjct: 59  PASLTKILTAVIA---LESGKL--DQVVVISPEATGVEPTKAGFRPGDRILLLDLVKASM 113

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT----TAR 192
             S+ND + A    +SGS +KF   M+ +A+ IGM+++ + N +G  D  + T    TA 
Sbjct: 114 VNSSNDAAFAIAIHLSGSVEKFVRAMNYRARAIGMKSSTFTNPAGF-DTGRYTGNYSTAE 172

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNR------IITNHNKLLNKMHNIDGIKTGYTR 246
           D   L      N P + +   +     R++      ++  HNKLL +     GIKTG+TR
Sbjct: 173 DLLALTEYAIHN-PLFNEITMLESIVVRDKRSGRYYLLRTHNKLLARYPYAVGIKTGFTR 231

Query: 247 NSGFNIVTSLRYKDDPIVAVVM 268
           ++G  ++   R ++  ++ V++
Sbjct: 232 SAGKCLIARARKENRDMLLVML 253


>gi|197301728|ref|ZP_03166798.1| hypothetical protein RUMLAC_00454 [Ruminococcus lactaris ATCC
           29176]
 gi|197299168|gb|EDY33698.1| hypothetical protein RUMLAC_00454 [Ruminococcus lactaris ATCC
           29176]
          Length = 339

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 62/126 (49%), Gaps = 3/126 (2%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G++  +  YPAS TK+MT Y+  +Y    KL     +  S T    +     L       
Sbjct: 103 GYRLYDKLYPASTTKLMTAYLALKY---GKLEDMVTVTDSVTGFAIDEVVCGLYPGGQVK 159

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
               +  L+ +S ND   A  E+ISGS + FA LM+ +AK++G   T + N  GLH+ + 
Sbjct: 160 LYDLLCGLLLKSGNDCGVAIAEYISGSVEAFAELMNEEAKELGATGTHFVNPHGLHEDDH 219

Query: 188 ITTARD 193
            TTA D
Sbjct: 220 YTTAYD 225


>gi|49481069|ref|YP_039030.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
           carboxypeptidase) [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49332625|gb|AAT63271.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
           carboxypeptidase) [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 279

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 89/162 (54%), Gaps = 15/162 (9%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYS---SIVIDVNKNQMT-GFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +   +I ID +  ++  G ++DE  YPAS+ 
Sbjct: 9   VMIATLFTGMIFFSYAQRQQAVRADQPSITGQYAITIDADTGEILYGKREDERSYPASIA 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 69  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 123

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG
Sbjct: 124 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASG 165


>gi|325685760|gb|EGD27835.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 428

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 112/252 (44%), Gaps = 29/252 (11%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHL-NTQIPVSKTAA- 111
           ++I +D +  Q+   K    PR  AS+TK++T+Y+  + ++  KL   +T  P +  A  
Sbjct: 48  AAIAVDADSGQILYAKNATTPRQIASMTKLVTVYLTLQAIKQGKLSWTSTSKPTAAIAKI 107

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +QN   S + L     +T +    A +  SAN  +    + +SG +  F   M       
Sbjct: 108 SQNTEYSNVPLTSSRAYTIKDLYRATLIESANGAAMTLAQAVSGDQVTFVKKMRKLLTSW 167

Query: 170 GMQNTIYKNASGLHDKNQIT--------------TARDQAILGILLRKNFPQYYKYFSIR 215
           G+++    NA GL + N  +              +A D AI+   L K+FP+  +  SI 
Sbjct: 168 GIKDAKIYNACGLANGNLGSAAYPGVGKDVENEMSATDMAIVCQKLLKDFPEVLQTTSIT 227

Query: 216 KFRYRNRI----ITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              + +      +TN N +L  + +      +DG+KTG T  +G     +++     I+ 
Sbjct: 228 SATFSSGSTQSQMTNWNWMLKGLSSYYSDLPVDGLKTGTTDKAGACFAGTVKKNGHRIIT 287

Query: 266 VVMGMPTSQERD 277
           VV+G   +  +D
Sbjct: 288 VVLGAKHANSQD 299


>gi|313890335|ref|ZP_07823967.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121321|gb|EFR44428.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 412

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 132/285 (46%), Gaps = 32/285 (11%)

Query: 31  MGKILFLSIIMI------SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKM 83
           M K++FL + ++      ++ ++ +  P  S I  +V+  ++   K  +   P ASL+K+
Sbjct: 1   MKKLVFLILPLLFCFLPKTILADDYKLPAKSGIAFEVSTGKILYEKNAKKTLPIASLSKI 60

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +T Y++++ +QS  L  +T + +S    +     + S + L  + Y T E+ + A++  +
Sbjct: 61  LTTYLVYKEVQSGNLSWDTPVKISNYPYELTTNYSISNVPLDARQY-TVEELLTAMLVTN 119

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DK 185
           AN  + A  E I+G+E  F   M  + ++  +      NASGL               D 
Sbjct: 120 ANSPAIALAEKIAGTEPLFVDKMKKQLQEWKIHKADLVNASGLSNEQLGNHIYPNSQKDA 179

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN----IDGIK 241
               +A D AI+   L  ++PQ  +        +R   I ++N LL  M N     +G+ 
Sbjct: 180 ENKMSALDLAIVTRHLLLDYPQVLELTKKPAATFRGDQIFSYNFLLEGMPNHRKGANGLF 239

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
             ++ N+G +++TS       +V++++   T + +D K     T+
Sbjct: 240 VAFSENNGASLITSSTENKMSVVSIIIN--TEKSKDDKLAHFTTA 282


>gi|325697563|gb|EGD39449.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK160]
          Length = 409

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 110/250 (44%), Gaps = 36/250 (14%)

Query: 55  SSIVIDVNKNQMTGFKQDE--PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-- 110
           S+I +D    ++  +++D   P    S+T ++T+Y+++E ++   L  +T + +S  A  
Sbjct: 17  SAIAVDATSGKIL-YEKDANTPIEVGSITNLLTVYLVYEAIERGDLTADTYVDISDYAYN 75

Query: 111 --ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
             A  N S + L+ K Y   +  I A +  SAN  + A  E + GSE+ F  +M  K K+
Sbjct: 76  LTADPNISNIPLEAKRYKVKDL-IAASLMSSANSATIALAEKVGGSEENFVQMMKAKLKE 134

Query: 169 IGMQNTIYKNASGLH------------------------DKNQITTARDQAILGILLRKN 204
            G+++    N++GL+                        D     +A D A++   L  +
Sbjct: 135 WGIKDATIVNSTGLNTLLLEYASEETDYTASASTAKKSKDTENKFSAYDLAVISRHLIMD 194

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN----IDGIKTGYTRNSGFNIVTSLRYKD 260
           FPQ     S    +     + N+N +L    N    +DG+K G +   G + V +     
Sbjct: 195 FPQVTDITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGISEKGGSSFVATTTENG 254

Query: 261 DPIVAVVMGM 270
             ++ VV+ +
Sbjct: 255 IRMITVVLDV 264


>gi|189219530|ref|YP_001940171.1| D-alanyl-D-alanine carboxypeptidase [Methylacidiphilum infernorum
           V4]
 gi|189186388|gb|ACD83573.1| D-alanyl-D-alanine carboxypeptidase [Methylacidiphilum infernorum
           V4]
          Length = 279

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 98/230 (42%), Gaps = 24/230 (10%)

Query: 55  SSIVIDVN-KNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++V D + K  +     D P YPAS TK+MT  I +E     KL     I  S    T+
Sbjct: 42  AALVWDSDQKKDLFSRDADSPYYPASTTKVMTALIAYE---KTKLEGTVSIQPSDLGLTE 98

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
            P   +   + Y + +  + AL+  S+N+ + A      G+   F   M+ KAK +G  +
Sbjct: 99  YPVVRFFPGEKY-SVKSLVYALLLPSSNEAAMALARQSCGTVMSFVDEMNKKAKSLGCNH 157

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNF------PQYYKYFSIRKFRYRN------ 221
           T ++N  G+     +T+A D       LRK F      P   K  S   +          
Sbjct: 158 THFQNPHGISYPGHMTSAND-------LRKIFEAFLAVPDLVKIISSPSYELATLDGKPV 210

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           + + N NKLL+    +   KTG+T  S    V   + +   ++ V++  P
Sbjct: 211 QYLMNTNKLLDLYQGMTAGKTGWTPESRNTFVGMFQRQGKKLIVVILDSP 260


>gi|302874416|ref|YP_003843049.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           cellulovorans 743B]
 gi|307690978|ref|ZP_07633424.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           cellulovorans 743B]
 gi|302577273|gb|ADL51285.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           cellulovorans 743B]
          Length = 454

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 132/282 (46%), Gaps = 51/282 (18%)

Query: 29  QLMGKILFLSIIMISMASELHAKP--------KYSSIVIDVNKNQMTGFKQDEPR-YPAS 79
           QL+  +L  S +++S +    A+P        KY+ I +D +  ++   K  + R YPAS
Sbjct: 4   QLLS-LLMASTMLLSFSKTTFAEPIPEPQIVGKYA-ITVDASTGEVIYAKDPDARVYPAS 61

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ-----GILA 134
           +TK+MT  ++      K   ++  +  ++TA  Q+PS + +        +Q      + A
Sbjct: 62  VTKVMTAILV-----EKLFKIDDMVTYTQTAKIQDPSSINMDIVDIPIGQQIPVSAALKA 116

Query: 135 LITRSAND----VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD--KNQI 188
           ++  SAND    V+T +    S S K+F  LM+++AK +GM +T +   +GL D     +
Sbjct: 117 MMLYSANDMTELVATNYPTKGSDSNKEFVALMNSEAKVLGMNSTNFVTTNGLDDNTNEHL 176

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRK-FRYRNRI-----------ITNHNKLLNKMHN 236
           TTA D   L I+ R    +  KY +IR  ++  N             + N NK L +  +
Sbjct: 177 TTAYD---LSIMAR----EAAKYPNIRAVWQLPNPTNIDFPGLTSVQVGNPNKFLQQGTD 229

Query: 237 -----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                  G+K+G+T  +G  +++        IV +V+   TS
Sbjct: 230 FYDPSCVGVKSGFTDKAGRCLLSVFERNGRQIVGIVLNCETS 271


>gi|229175705|ref|ZP_04303213.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
 gi|228607846|gb|EEK65160.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
          Length = 301

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 88/162 (54%), Gaps = 15/162 (9%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    I ID +  + + G ++DE  YPAS+ 
Sbjct: 31  VMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGITIDADTGEILYGKREDERSYPASIG 90

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      N +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 91  KMMTTLLLLENVKE-----NEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 145

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG
Sbjct: 146 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASG 187


>gi|21222827|ref|NP_628606.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces coelicolor A3(2)]
 gi|7635949|emb|CAB88446.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           coelicolor A3(2)]
          Length = 832

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 11/209 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P+     +DV      G   D+   P AS+ K+MT Y++      K      +I + + A
Sbjct: 484 PESGQAALDVQGIGSFGSSGDQKPVPIASVAKVMTAYLVLRDHPLKSGAEGPKIKIDQAA 543

Query: 111 ATQN----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
             Q+     S + +      +  + + A++  SAN+V+     + +GSEK F   M+  A
Sbjct: 544 EDQSQAGQESTVDVFAGDSISQREALQAILIASANNVARLLARWDAGSEKAFVEKMNGAA 603

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR-YRNRIIT 225
           K +GM NT Y + SGL++   ++TA DQ  L     K  P + +  ++  +  Y+     
Sbjct: 604 KDLGMTNTTYTDPSGLNNTT-VSTAVDQVKLAKAAMKE-PAFREVAAMMSYNDYKGENHG 661

Query: 226 NHNKLLNKMHN-IDGIKTGYTRNSGFNIV 253
           N N+L+   HN + GIKTG T ++  N+V
Sbjct: 662 NWNQLVG--HNGVVGIKTGTTTSALGNLV 688


>gi|222098460|ref|YP_002532518.1| serine-type d-ala-d-ala carboxypeptidase (d-alanyl-d-alanine
           carboxypeptidase) [Bacillus cereus Q1]
 gi|221242519|gb|ACM15229.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
           carboxypeptidase) [Bacillus cereus Q1]
          Length = 279

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 93/178 (52%), Gaps = 15/178 (8%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    I ID +  ++  G ++DE  YPAS+ 
Sbjct: 9   VMIATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIA 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 69  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 123

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        +  D AI+
Sbjct: 124 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAII 181


>gi|153954083|ref|YP_001394848.1| DacA3 [Clostridium kluyveri DSM 555]
 gi|219854696|ref|YP_002471818.1| hypothetical protein CKR_1353 [Clostridium kluyveri NBRC 12016]
 gi|146346964|gb|EDK33500.1| DacA3 [Clostridium kluyveri DSM 555]
 gi|219568420|dbj|BAH06404.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 420

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 110/227 (48%), Gaps = 20/227 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I +D+  N++   K  + + YPAS TK++T  ++ +  +   +   T    ++  ++ 
Sbjct: 39  SAITVDMQTNEIIYEKNPDTKIYPASTTKLLTAILLEKNKKETDMLTYTAEAKAQPQSSL 98

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           N +   ++     + +  + AL+  SAND++    E IS S  +FA  M+ + + + ++N
Sbjct: 99  NSAARPIEVGDTISAKNVMDALLMFSANDMACVIAENISKSIPEFADKMNEEVQSLNLKN 158

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR----------- 222
           T +   +GLH+ +  +T+ D +I+    R+ F   +    IR   Y++            
Sbjct: 159 THFITPNGLHNPDHYSTSYDMSIIA---REAFKNSW----IRDTIYKSTSTVTTSKGASF 211

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            I N NKLL K   I G KTGYT  +G  +V      +  I+ +VM 
Sbjct: 212 AIINTNKLLGKDGCIGG-KTGYTDPAGRCLVAIYERDNRKILGIVMN 257


>gi|295396423|ref|ZP_06806585.1| serine-type D-Ala-D-Ala carboxypeptidase [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294970725|gb|EFG46638.1| serine-type D-Ala-D-Ala carboxypeptidase [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 403

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 111/246 (45%), Gaps = 24/246 (9%)

Query: 77  PASLTKMMT-LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           PAS+ K++T L ++ E    KK H      +S+     + +++ L     ++ +    ++
Sbjct: 71  PASVQKLLTALALVDELPDVKKKHR-----ISEADTQVDGTRVGLLRDNEYSIDLLFRSM 125

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  SAND + A GE + G  K    LM  KA+++GM +T+    SGL    Q TT  D  
Sbjct: 126 LMSSANDSAYALGEAVGGQHKALE-LMHRKARQLGMDSTVVGTTSGLDAPGQGTTIDDLL 184

Query: 196 ILGILLRKN-------------FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKT 242
            L     KN             FP  Y +   +K + +   I NH +L+  +    G+K 
Sbjct: 185 RLAHEFTKNKYLMKVVQTQTLDFPGGYDHD--KKKKVKGYQIQNHTRLIGLVEGAIGLKN 242

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKD 302
           GYT+ +  + + +    D    AVV+   T Q R Q A +L+     +   K  +T   +
Sbjct: 243 GYTQEARGSFLGAATRGDTTYAAVVLRAQT-QSR-QAAADLLNWAFNQTDPKVTRTVAFE 300

Query: 303 NLSSTS 308
           +LS+ S
Sbjct: 301 DLSTPS 306


>gi|331700813|ref|YP_004397772.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus buchneri
           NRRL B-30929]
 gi|329128156|gb|AEB72709.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus buchneri
           NRRL B-30929]
          Length = 434

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 122/267 (45%), Gaps = 36/267 (13%)

Query: 34  ILFLSIIMISMAS----ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYI 88
           IL +S I +S  S    +  AK  Y   V+D    Q+   K    + P ASL+K+MTLY+
Sbjct: 25  ILTMSAISVSAKSANQQKFQAKEAY---VMDAETGQVLYQKNGSTKRPIASLSKLMTLYL 81

Query: 89  IFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
             + + + ++  N ++PV     + + +       +K    +T      A +  S+N  +
Sbjct: 82  TKKAIDNHQITWNQKVPVDDQLRRMSKSYEVGGFRIKRSKEYTVRDLYKAALIASSNPSA 141

Query: 145 TAFGEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLHDKN----------------Q 187
            A G+ + G    +F  +M+ +A   G+  T + ++SGL + +                 
Sbjct: 142 IALGKLVGGGNNTEFIKMMNEQAHAWGIDAT-FVSSSGLDNTDLSKYHYQVPHTTSKAQN 200

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL------NKMHNIDGIK 241
           + +A+  + +   + + FP   ++      +  N+++ N N+LL      +K  ++DG+K
Sbjct: 201 MVSAKAISTVAAKVLEIFPTITQWSKQPSMKVGNQVLVNSNRLLPGSAFYHKSTHVDGLK 260

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           TG+T N+G  I  +  +    ++A ++
Sbjct: 261 TGFTVNAGLCITVTYWHDGRHLIATII 287


>gi|261212871|ref|ZP_05927155.1| murein-DD-endopeptidase [Vibrio sp. RC341]
 gi|260837936|gb|EEX64613.1| murein-DD-endopeptidase [Vibrio sp. RC341]
          Length = 300

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 101/214 (47%), Gaps = 27/214 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAAT 112
           S++VID+  N++      +   P AS+TK+MT  +  +     KL ++ ++P++ K A  
Sbjct: 33  SALVIDLKTNEVIYSSNPDAVKPIASVTKLMTAMVTLD----AKLPMDAKLPITIKEAKE 88

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  ++  +  + ++ +L  +  S N  + +      G  K F   M+ KAK +GM+
Sbjct: 89  MKGVHSRVRIGSEISRKEMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALGMK 148

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-------------FRY 219
           NT +   +GL ++N +++ARD  +L +   K +P   +  S  K             FR 
Sbjct: 149 NTRFVEPTGLSEQN-VSSARDLVLL-LKASKKYPMLGQLSSTDKKTVTFAKPRYTLDFRN 206

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            NR++ N N        ID  KTG+T  +G  +V
Sbjct: 207 TNRLVHNDN------WRIDLTKTGFTNAAGHCLV 234


>gi|42784193|ref|NP_981440.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           ATCC 10987]
 gi|42740124|gb|AAS44048.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           ATCC 10987]
          Length = 279

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 93/178 (52%), Gaps = 15/178 (8%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    I ID +  ++  G ++DE  YPAS+ 
Sbjct: 9   VMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGITIDADTGEILYGKREDERSYPASIA 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 69  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 123

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        +  D AI+
Sbjct: 124 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAII 181


>gi|257437711|ref|ZP_05613466.1| putative D-alanyl-D-alanine carboxypeptidase [Faecalibacterium
           prausnitzii A2-165]
 gi|257200018|gb|EEU98302.1| putative D-alanyl-D-alanine carboxypeptidase [Faecalibacterium
           prausnitzii A2-165]
          Length = 429

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 89/200 (44%), Gaps = 19/200 (9%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-----KTAATQNPSKLYLKEKTYF 126
           D+ RY ASLTKMMT  +  E    K ++    IP S     K     N S + L+     
Sbjct: 61  DQQRYIASLTKMMTALLFLE--SGKDMNAEITIPASLTQEFKDIQNANGSTINLRIGETV 118

Query: 127 TTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
                +  L+  SAND ++A    +S G    F   M+ +AK++G  +T +    GL+D 
Sbjct: 119 RRIDLLYGLLVASANDAASAIASDVSDGDLTAFVARMNQRAKELGCTSTSFTCVHGLYDY 178

Query: 186 NQITTARDQAILGILLRKN--FPQYYKYFS----IRKFRYRNRIITNHNKLLNKMHN--- 236
             +++A D A++     +N  + Q     S            R IT+ N +LN  +    
Sbjct: 179 GNVSSAHDLALIAKACAENETYMQVANTLSYTLPATNLHQNERTITSTNLMLNPEYPYYR 238

Query: 237 --IDGIKTGYTRNSGFNIVT 254
             I G+KTG+T  +G   VT
Sbjct: 239 DYIRGMKTGFTTLAGRCYVT 258


>gi|82703413|ref|YP_412979.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrosospira
           multiformis ATCC 25196]
 gi|82411478|gb|ABB75587.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Nitrosospira multiformis ATCC 25196]
          Length = 278

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 106/224 (47%), Gaps = 15/224 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAAT 112
           S++V+D  + Q+   K  +   P AS+TK+MT  ++ +     KL LN +I + S     
Sbjct: 31  SALVVDPQRGQVLFHKNADSVMPIASITKLMTAMVVLD----AKLPLNQEIVIDSADVDV 86

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              ++  L+  T FT  + +   +  S N  + A G    G    F   M+ KA ++GM 
Sbjct: 87  IKYTRSRLRVGTKFTRGELLRLALMSSENRAAAALGRTYPGGLNAFVAAMNRKAFQLGMG 146

Query: 173 NTIYKNASGLHDKNQITTARDQAIL-----GILLRKNFP--QYYKYFSIRKFRYRNRIIT 225
           +T + +++GL+  N ++TARD A +     G  L + F     ++  S+ K R RN    
Sbjct: 147 STYFVDSTGLNSGN-VSTARDLAKMVKAAHGYRLIRVFSTTAAHEVASMGKVRSRNLNYV 205

Query: 226 NHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N N+L+       GI KTG+   +G  +V        P + V++
Sbjct: 206 NSNRLVRSSSWDIGISKTGFLSEAGRCLVMHANITGKPTIIVLL 249


>gi|228961252|ref|ZP_04122872.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798458|gb|EEM45451.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 279

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 93/178 (52%), Gaps = 15/178 (8%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    + ID +  + + G ++DE  YPAS+ 
Sbjct: 9   VMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDADTGEVLYGKREDERSYPASIA 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 69  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 123

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        +  D AI+
Sbjct: 124 ADPIAESIAEHIAGSKNEFVKMMNTRAKELGTKHATFKNASGADALGNKVSPYDIAII 181


>gi|225020583|ref|ZP_03709775.1| hypothetical protein CORMATOL_00590 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946529|gb|EEG27738.1| hypothetical protein CORMATOL_00590 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 498

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 128/294 (43%), Gaps = 32/294 (10%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++   + G K    RY PAS+ K++   +  E + +  L LN  + VS  +A Q  
Sbjct: 179 LVWDLDSGAVLGTKDPHGRYRPASIIKVL---LAMEVINN--LDLNKVVTVSAESANQEG 233

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S + +     +T    +  L+ +S ND + A  + + G+E+  A + +  A  +G  +T 
Sbjct: 234 SAVGIGPGGKYTIRDLLHGLLLQSGNDAAHALAQELGGNEQALARVNA-LAHNLGATDTY 292

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY------RNRIITNHNK 229
             + SGL      T+ARD AI      KN P + +     ++++          I N N 
Sbjct: 293 AASYSGLDAPGMSTSARDMAIFYHYAWKN-PTFAQIVGTDEYKFPGYQDNPGWPIGNDNG 351

Query: 230 LLNKMHNIDGI--KTGYTRNSGFNIVTSLRYKDDPIVAVVM------GMPTSQER----D 277
           LL  M++ DGI  KTG+T ++    V + +  +  I AV++      G P  Q +    D
Sbjct: 352 LL--MNDPDGIGGKTGFTSDANHTFVGAKKVGNRRIAAVILDTTVDKGRPWQQAQKLIDD 409

Query: 278 QKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLM---IKKLKRTY-SQFKK 327
            + +      L +      Q  +  + S+T   + +          TY SQF K
Sbjct: 410 NRNVTANVGMLPQPGAAGAQASQHPSASATPSPRPIQEVHASSGDGTYASQFMK 463


>gi|229199155|ref|ZP_04325838.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
 gi|228584426|gb|EEK42561.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
          Length = 273

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 93/178 (52%), Gaps = 15/178 (8%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    I ID +  ++  G ++DE  YPAS+ 
Sbjct: 3   VMIATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIA 62

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 63  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 117

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        +  D AI+
Sbjct: 118 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAII 175


>gi|321313677|ref|YP_004205964.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5]
 gi|320019951|gb|ADV94937.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5]
          Length = 443

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 129/264 (48%), Gaps = 38/264 (14%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY--------SSIVIDVNKNQMTGFKQDEPR 75
           I++  QL+  ++ L++ +  +A    AK           ++I+I+ +  ++   K  + R
Sbjct: 3   IKKCKQLLMSLVVLTLAVTCLAPMSKAKAASDPIDINASAAIMIEASSGKILYSKNADKR 62

Query: 76  YP-ASLTKMMTLYIIFEYLQSKKLHLN-TQIP---VSKTAATQNPSKLYLKEKTYFTTEQ 130
            P AS+TKMMT Y++ E +   K+  + T  P   V + +   + S + L++   +T ++
Sbjct: 63  LPIASMTKMMTEYLLLEAIDQGKVKWDQTYTPDDYVYEISQDNSLSNVPLRKDGKYTVKE 122

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN---- 186
              A    SAN  + A  E ++GSE KF   M+ KAK++G+ +  + NA+GL +K+    
Sbjct: 123 LYQATAIYSANAAAIAIAEIVAGSETKFVEKMNAKAKELGLTDYKFVNATGLENKDLHGH 182

Query: 187 ----------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL 231
                        +A+D AIL   L  ++P+  +  SI K ++R        + N N +L
Sbjct: 183 QPEGTSVNEESEVSAKDMAILADHLITDYPEILETSSIAKTKFREGTDDEMDMPNWNFML 242

Query: 232 N------KMHNIDGIKTGYTRNSG 249
                  K   +DG+KTG T ++G
Sbjct: 243 KGLVSEYKKATVDGLKTGSTDSAG 266


>gi|291482380|dbj|BAI83455.1| penicillin-binding protein 5 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 443

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 129/264 (48%), Gaps = 38/264 (14%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY--------SSIVIDVNKNQMTGFKQDEPR 75
           I++  QL+  ++ L++ +  +A    AK           ++I+I+ +  ++   K  + R
Sbjct: 3   IKKCKQLLMSLVVLTLAVTCLAPMSKAKAASDPIDINASAAIMIEASSGKILYSKNADKR 62

Query: 76  YP-ASLTKMMTLYIIFEYLQSKKLHLN-TQIP---VSKTAATQNPSKLYLKEKTYFTTEQ 130
            P AS+TKMMT Y++ E +   K+  + T  P   V + +   + S + L++   +T ++
Sbjct: 63  LPIASMTKMMTEYLLLEAIDQGKVKWDQTYTPDDYVYEISQDNSLSNVPLRKDGKYTVKE 122

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN---- 186
              A    SAN  + A  E ++GSE KF   M+ KAK++G+ +  + NA+GL +K+    
Sbjct: 123 LYQATAIYSANAAAIAIAEIVAGSETKFVEKMNAKAKELGLTDYKFVNATGLENKDLHGH 182

Query: 187 ----------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL 231
                        +A+D AIL   L  ++P+  +  SI K ++R        + N N +L
Sbjct: 183 QPEGTSVNEESEVSAKDMAILADHLITDYPEILETSSIAKTKFREGTDDEMDMPNWNFML 242

Query: 232 N------KMHNIDGIKTGYTRNSG 249
                  K   +DG+KTG T ++G
Sbjct: 243 KGLVSEYKKATVDGLKTGSTDSAG 266


>gi|182417161|ref|ZP_02948532.1| D-alanyl-D-alanine carboxypeptidase family [Clostridium butyricum
           5521]
 gi|237668489|ref|ZP_04528473.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182379003|gb|EDT76509.1| D-alanyl-D-alanine carboxypeptidase family [Clostridium butyricum
           5521]
 gi|237656837|gb|EEP54393.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 427

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 124/268 (46%), Gaps = 32/268 (11%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY---------SSIVIDVNKNQMTGFKQ-DE 73
           +++N  L   IL LSI + S  + ++AK            ++I +D+   ++   K  D 
Sbjct: 1   MKKNFILKTLILTLSISLFSPLASINAKAATTAQPDINAQAAITMDLETGEIIYCKDADS 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-------YLKEKTYF 126
            RYPAS TK++T  ++ E  Q        +I  +++A  Q    L        +K     
Sbjct: 61  KRYPASTTKLLTGLLLAENKQKSD-----EIAFTESAKIQPEYSLNINFMHNSMKVGDTM 115

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           + +  +  L+  S ND +    + ++G+ +KFA +M+ KAK+IG  N+ +  A+GLHD+N
Sbjct: 116 SADDVMKGLLLFSGNDTAYMIADNVAGNSQKFADMMNAKAKEIGANNSHFVTANGLHDEN 175

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIR------KFRYRNRIITNHNKLLNKMHNIDGI 240
             TTA D   L ++ +  F   ++  ++       +      ++ N N  L K  NI G 
Sbjct: 176 HYTTAYD---LSLITKAAFQNDWERETMELADASIQINGAKVLLENRNLGLGKNGNIAG- 231

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G  +          ++ VV+
Sbjct: 232 KTGLTNAAGGCLAAVYEVNGRKLIGVVL 259


>gi|213160842|ref|ZP_03346552.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
          Length = 236

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 10/139 (7%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  DE R PASLTKMMT Y+I + +++ K  
Sbjct: 61  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFK 117

Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V   A AT NP     S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 118 ETDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 177

Query: 154 SEKKFAILMSNKAKKIGMQ 172
           S+  F  LM++    +G++
Sbjct: 178 SQDAFVGLMNSYVNALGLE 196


>gi|206976429|ref|ZP_03237336.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           H3081.97]
 gi|217962480|ref|YP_002341052.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH187]
 gi|229141730|ref|ZP_04270260.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
 gi|206745353|gb|EDZ56753.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           H3081.97]
 gi|217066911|gb|ACJ81161.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH187]
 gi|228641798|gb|EEK98099.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
          Length = 279

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 93/178 (52%), Gaps = 15/178 (8%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    I ID +  ++  G ++DE  YPAS+ 
Sbjct: 9   VMIATLFTGMIFFSYAQRQQAVRADQPSITGRYGITIDADTGEILYGKREDERSYPASIA 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 69  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 123

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        +  D AI+
Sbjct: 124 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAII 181


>gi|228993740|ref|ZP_04153645.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
           12442]
 gi|228765951|gb|EEM14600.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
           12442]
          Length = 279

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 79/145 (54%), Gaps = 8/145 (5%)

Query: 56  SIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--AT 112
            + ID N  + + G +++E  YPAS+ KMMT  ++ E ++      + +I +++ A    
Sbjct: 42  GVTIDANTGEVLYGKREEERSYPASVAKMMTTILLLENVKE-----DEEITITENAIKTE 96

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              +K+ L+       ++ +  ++  SA+ ++ +  E I+GS++KF  +M+ +AK++G +
Sbjct: 97  SQSAKIKLRAGEKLKRDEALKLMLIISADPIAESIAEHIAGSKEKFVKMMNARAKELGTK 156

Query: 173 NTIYKNASGLHDKNQITTARDQAIL 197
           +  +KNASG        +  D AI+
Sbjct: 157 HATFKNASGADALGNKVSPYDIAII 181


>gi|255602672|ref|XP_002537900.1| d-alanyl-d-alanine carboxypeptidase, putative [Ricinus communis]
 gi|223514649|gb|EEF24482.1| d-alanyl-d-alanine carboxypeptidase, putative [Ricinus communis]
          Length = 269

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 114/260 (43%), Gaps = 31/260 (11%)

Query: 34  ILFLSIIMISMASELHAKPKYSS--IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIF 90
           I  L +   S+ +     P YS   IV DV + ++   K  D+ R  ASLTK+MT  ++ 
Sbjct: 5   ICALLLAATSLCARADTPPLYSPSVIVYDVTRGEVLLEKNADDLRPIASLTKLMTAMVVL 64

Query: 91  EYLQSKKLHL---NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           +  Q     L      I   K + ++ P    LK +         LAL++ S N  ++A 
Sbjct: 65  DKAQEMGDTLTIDEADIDRLKHSGSRIPVGTSLKREAMLR-----LALMS-SENRAASAL 118

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
                G +  F   M+ KA+ + M  T +++ +GL   N ++TARD   L I    ++P 
Sbjct: 119 SRSFPGGQPAFIEQMNLKARGLSMSGTHFEDPTGLSPDN-VSTARDVVKLAIEA-SHYPM 176

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI-----------KTGYTRNSGFNIVTSL 256
              + ++  +    + I N  +     HN D +           KTGYTR +G  IV  +
Sbjct: 177 ISLFTTLTAY---EQTIGNRTRFY---HNTDPVVRWTDWDVQLAKTGYTREAGRCIVVDV 230

Query: 257 RYKDDPIVAVVMGMPTSQER 276
                P++  ++G  +++ R
Sbjct: 231 AMPRGPVIIALLGARSARAR 250


>gi|332366179|gb|EGJ43934.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK355]
          Length = 422

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 120/277 (43%), Gaps = 41/277 (14%)

Query: 31  MGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQDE--PRYPASLTKM 83
           M ++    ++++ + +   A   Y     S++ +D    ++  +++D   P    S+T +
Sbjct: 1   MKRLFLCFLVLVGLTASKVAADDYNIAAKSAMAVDATSGKIL-YEKDATTPIEVGSITNL 59

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFTTEQGILALITRS 139
           +T+Y+++E +    L  +T + +S  A   T NP  S + L+ + Y   +  I A +  S
Sbjct: 60  LTVYLVYEAIDRGDLTADTYVDISDYAYNLTANPNISNVPLEARRY-KVKDLIAASLMSS 118

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------------- 183
           AN  + A  E + GSE+ F  +M  K K+ G+ +    N++GL+                
Sbjct: 119 ANSATIALAEKVGGSEENFVQMMKAKLKEWGITDATVVNSTGLNTLLLEYASEETDYTAS 178

Query: 184 --------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
                   D     +A D A++   L  +FPQ  +  S    +     + N+N +L    
Sbjct: 179 ASTSKKNKDSENKFSAYDLAVISRHLIMDFPQVTEITSKSTAKIAGTSLENYNFMLENQS 238

Query: 236 N----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N    +DG+K G +   G + V +       ++ VV+
Sbjct: 239 NFRSGVDGLKAGSSEKGGSSFVATTTENGIRMITVVL 275


>gi|228999784|ref|ZP_04159358.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
 gi|229007339|ref|ZP_04164938.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4]
 gi|228753944|gb|EEM03383.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4]
 gi|228759991|gb|EEM08963.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
          Length = 273

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 79/145 (54%), Gaps = 8/145 (5%)

Query: 56  SIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--AT 112
            + ID N  + + G +++E  YPAS+ KMMT  ++ E ++      + +I +++ A    
Sbjct: 36  GVTIDANTGEVLYGKREEERSYPASVAKMMTTILLLENVKE-----DEEITITENAIKTE 90

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              +K+ L+       ++ +  ++  SA+ ++ +  E I+GS++KF  +M+ +AK++G +
Sbjct: 91  SQSAKIKLRAGEKLKRDEALKLMLIISADPIAESIAEHIAGSKEKFVKMMNARAKELGTK 150

Query: 173 NTIYKNASGLHDKNQITTARDQAIL 197
           +  +KNASG        +  D AI+
Sbjct: 151 HATFKNASGADALGNKVSPYDIAII 175


>gi|229112452|ref|ZP_04241990.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
 gi|229130265|ref|ZP_04259224.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
 gi|229147556|ref|ZP_04275903.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
 gi|228635982|gb|EEK92465.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
 gi|228653198|gb|EEL09077.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
 gi|228671100|gb|EEL26406.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
          Length = 279

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 93/178 (52%), Gaps = 15/178 (8%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    + ID +  + + G ++DE  YPAS+ 
Sbjct: 9   VMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDADTGEVLYGKREDERSYPASIA 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 69  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 123

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        +  D AI+
Sbjct: 124 ADPIAESIAEHIAGSKNEFVKMMNTRAKELGTKHATFKNASGADALGNKVSPYDIAII 181


>gi|254776738|ref|ZP_05218254.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 367

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 98/224 (43%), Gaps = 24/224 (10%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++   +   K    R+ PAS+ K++             L+LN  +P +   A    
Sbjct: 58  LVADLDSGAVIAAKDPHGRHRPASIIKVLVAMAAI-----NTLNLNKAVPGTADDAAAEG 112

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE---KKFAILMSNKAKKIGMQ 172
           +K+ ++E   FT  Q +  L+  S ND + A    + G +   +K  +L    A K+G Q
Sbjct: 113 TKVGVEEGGVFTVNQLLHGLLMHSGNDAAHALAMQLGGMQQALEKINVL----AAKLGGQ 168

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYRNRI------I 224
           +T     SGL      T+A D   +G+  R  +  P +    + R F +          +
Sbjct: 169 DTRVATPSGLDAPGMSTSAYD---IGLFYRYAWQNPTFADIVATRTFDFPGHGDHPGYEL 225

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            N N+LL K     G KTGYT ++G   V +  +    +VAV++
Sbjct: 226 ENDNQLLYKYPGALGGKTGYTDDAGQTFVGAANHDGRRLVAVLL 269


>gi|312865485|ref|ZP_07725712.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus downei
           F0415]
 gi|311099003|gb|EFQ57220.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus downei
           F0415]
          Length = 411

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 126/269 (46%), Gaps = 36/269 (13%)

Query: 33  KILFLSIIM---------ISMASELHAKPKYSSIVIDVNKNQMTGFKQDE--PRYPASLT 81
           K  F+S++M         ++ A +  A  K+ +I ++    ++  +++D   P   AS+T
Sbjct: 2   KKFFISLLMAFSLLFTASLAKADDFDAPAKH-AIAVEATTGKIL-YEKDASTPDGVASMT 59

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALIT 137
           K++T+Y++++ +   KL  N+++ +S  A         S + +  + Y T ++ + A + 
Sbjct: 60  KILTVYMVYKAIDEGKLSWNSKVKISDYAYDLTTNSEASNVPMDAREY-TVKELVNAALI 118

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-------------- 183
            SAN  + A  E + G E  F  +M  + K+ G+++    NASGL+              
Sbjct: 119 ASANSAAIALAEKLGGDEATFVDMMQAQLKQWGIKDAKLVNASGLNNSYLGDHIYPGSKS 178

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDG 239
           D   + +A+D AI+   L  ++P           ++ N  +   N +L+ M      +DG
Sbjct: 179 DDENLMSAKDMAIIARHLISDYPDVLDITKKTSEKFGNTDMATFNMMLDGMPYAREGVDG 238

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +KTG T  +G + V +       +++VVM
Sbjct: 239 LKTGTTELAGQSFVATSTENGMRVISVVM 267


>gi|30265054|ref|NP_847431.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Ames]
 gi|47530558|ref|YP_021907.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|47567050|ref|ZP_00237767.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus
           G9241]
 gi|49187867|ref|YP_031120.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Sterne]
 gi|52140522|ref|YP_086306.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
           carboxypeptidase) [Bacillus cereus E33L]
 gi|65317000|ref|ZP_00389959.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A2012]
 gi|118480099|ref|YP_897250.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
           Hakam]
 gi|165870851|ref|ZP_02215503.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0488]
 gi|167634882|ref|ZP_02393200.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0442]
 gi|167639927|ref|ZP_02398195.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0193]
 gi|170685975|ref|ZP_02877198.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0465]
 gi|170706954|ref|ZP_02897411.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0389]
 gi|177652350|ref|ZP_02934853.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0174]
 gi|190567200|ref|ZP_03020115.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis Tsiankovskii-I]
 gi|196032895|ref|ZP_03100308.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           W]
 gi|196040599|ref|ZP_03107899.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           NVH0597-99]
 gi|218906208|ref|YP_002454042.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH820]
 gi|227817784|ref|YP_002817793.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. CDC 684]
 gi|228917642|ref|ZP_04081184.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228930039|ref|ZP_04093049.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228948739|ref|ZP_04111017.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229124549|ref|ZP_04253734.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
 gi|229601870|ref|YP_002869251.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0248]
 gi|254687345|ref|ZP_05151202.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254725358|ref|ZP_05187141.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A1055]
 gi|254735318|ref|ZP_05193026.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254740584|ref|ZP_05198275.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Kruger B]
 gi|254753154|ref|ZP_05205190.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Vollum]
 gi|254761497|ref|ZP_05213518.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Australia 94]
 gi|30259731|gb|AAP28917.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
           Ames]
 gi|47505706|gb|AAT34382.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|47556368|gb|EAL14702.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus
           G9241]
 gi|49181794|gb|AAT57170.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Sterne]
 gi|51973991|gb|AAU15541.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
           carboxypeptidase) [Bacillus cereus E33L]
 gi|118419324|gb|ABK87743.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
           Hakam]
 gi|164713360|gb|EDR18885.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0488]
 gi|167512008|gb|EDR87386.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0193]
 gi|167529632|gb|EDR92381.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0442]
 gi|170128057|gb|EDS96927.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0389]
 gi|170670439|gb|EDT21179.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0465]
 gi|172082356|gb|EDT67422.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0174]
 gi|190561704|gb|EDV15674.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis Tsiankovskii-I]
 gi|195994324|gb|EDX58279.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           W]
 gi|196028731|gb|EDX67338.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           NVH0597-99]
 gi|218535970|gb|ACK88368.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH820]
 gi|227003439|gb|ACP13182.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
           CDC 684]
 gi|228658889|gb|EEL14544.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
 gi|228811046|gb|EEM57389.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228829538|gb|EEM75165.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842019|gb|EEM87124.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229266278|gb|ACQ47915.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0248]
          Length = 279

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 88/162 (54%), Gaps = 15/162 (9%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    I ID +  ++  G ++DE  YPAS+ 
Sbjct: 9   VMIATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIA 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 69  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 123

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG
Sbjct: 124 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASG 165


>gi|300119675|ref|ZP_07057217.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           SJ1]
 gi|298722970|gb|EFI63870.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           SJ1]
          Length = 279

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 88/162 (54%), Gaps = 15/162 (9%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    I ID +  ++  G ++DE  YPAS+ 
Sbjct: 9   VMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGITIDADTGEILYGKREDERSYPASIA 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 69  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 123

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG
Sbjct: 124 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASG 165


>gi|30023045|ref|NP_834676.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
 gi|29898605|gb|AAP11877.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
          Length = 273

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 93/178 (52%), Gaps = 15/178 (8%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    + ID +  + + G ++DE  YPAS+ 
Sbjct: 3   VMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDADTGEVLYGKREDERSYPASIA 62

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 63  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 117

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        +  D AI+
Sbjct: 118 ADPIAESIAEHIAGSKNEFVKMMNTRAKELGTKHATFKNASGADALGNKVSPYDIAII 175


>gi|328944931|gb|EGG39089.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK1087]
          Length = 422

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 121/276 (43%), Gaps = 42/276 (15%)

Query: 33  KILFLSI-IMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQDE--PRYPASLTKMM 84
           K LFL + +++ M +   A   +     S+I +D    ++  +++D   P    S+T ++
Sbjct: 2   KRLFLCLLVLVGMTASKVAADDFNIAAKSAIAVDATSGKIL-YEKDANTPIEVGSITNLL 60

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFTTEQGILALITRSA 140
           T+Y+++E +    L  +T + +S  A   T NP  S + L+ K Y   +  I A +  S+
Sbjct: 61  TVYLVYEAIDRGDLTADTYVDISDYAYTLTSNPNISNVPLEAKRY-KAKDLIAASLMSSS 119

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------------- 183
           N  + A  E + GSE+ F  +M  K K+ G+++    N++GL+                 
Sbjct: 120 NSATIALAEKVGGSEENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYSASA 179

Query: 184 -------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN 236
                  D     +A D A++   L  +FPQ     S    +     + N+N +L    N
Sbjct: 180 STSKKSKDTENKFSAYDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSN 239

Query: 237 ----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
               +DG+K G +   G + V +       ++ VV+
Sbjct: 240 FRSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVL 275


>gi|229026472|ref|ZP_04182829.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272]
 gi|228734935|gb|EEL85573.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272]
          Length = 279

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 93/178 (52%), Gaps = 15/178 (8%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    I ID +  ++  G ++DE  YPAS+ 
Sbjct: 9   VMIATLFTGMIFFSYAHRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIA 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 69  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 123

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        +  D AI+
Sbjct: 124 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAII 181


>gi|291087663|ref|ZP_06347077.2| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
 gi|291074391|gb|EFE11755.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
          Length = 341

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 27/204 (13%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQNPSKLY-LKEKTYFTTEQ 130
           E  YPAS+TK+MT  +  E     +  L+ ++ V++ A  T+  + L  +K     T EQ
Sbjct: 113 EELYPASITKVMTAILAIE-----EGELSDEVTVTQDAVITEAGASLAGIKPGDTLTMEQ 167

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  L+  S ND + A    +SGS + FA  M+ KA+++G  +T +KN +GL D    TT
Sbjct: 168 LLYGLMIPSGNDAANAIAVHMSGSLESFAERMNEKARELGATHTHFKNPNGLTDPEHYTT 227

Query: 191 ARDQAILGILLRK--NFPQYYKYFSIRKF--RYRN---RIITNHNKLLNKMHN------- 236
           A D   L ++  +    P++ +      +   YR+     ++   K+ N   N       
Sbjct: 228 AYD---LYLIFNEALKLPKFREVIGADSYTASYRDADGNTVSKTWKVGNWYQNGEEKAPQ 284

Query: 237 ---IDGIKTGYTRNSGFNIVTSLR 257
              + G KTG T+ +G+ ++ + R
Sbjct: 285 GVTVLGGKTGTTQAAGYCLIMAER 308


>gi|24378762|ref|NP_720717.1| putative D-alanyl-D-alanine carboxypeptidase; penicillin-binding
           protein [Streptococcus mutans UA159]
 gi|24376631|gb|AAN58023.1|AE014874_9 putative D-alanyl-D-alanine carboxypeptidase; penicillin-binding
           protein [Streptococcus mutans UA159]
          Length = 414

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 127/268 (47%), Gaps = 30/268 (11%)

Query: 30  LMGKILFLSIIMISM------ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           +M KI+ L  I+IS+      A E        +I ++ N  ++   K  D     AS+TK
Sbjct: 1   MMKKIVCLLFILISLIGFGVKAEENFDVSAKHAIAVEANTGKILYEKDADTTAGIASITK 60

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALITR 138
           M+T+Y++++ ++S  L  ++++ +S    +     + S + +  + Y T ++ + A +  
Sbjct: 61  MLTVYMVYKEIKSGDLTWSSKVKISDYPYSLTKDYSASNVPMDAREY-TVKELVEASMIA 119

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK------------- 185
           SAN  + A  E + G+E KF  +M  + ++ G+ +    NASGL++K             
Sbjct: 120 SANSAAIALAEKVGGTEPKFVDMMKKQLQEWGITDAKLVNASGLNNKTLGDHIYPDSSSE 179

Query: 186 -NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
              + +ARD AI+   L K FPQ  K        +    +  +N +L  M      +DG+
Sbjct: 180 DENMMSARDVAIVAHHLIKEFPQVLKITEKTNSDFSGNKMETYNYMLPNMPYAREGVDGL 239

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G   V + +     +++VV+
Sbjct: 240 KTGTTELAGACFVATSKENGMRLISVVL 267


>gi|228923740|ref|ZP_04087018.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835869|gb|EEM81232.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 290

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 89/162 (54%), Gaps = 15/162 (9%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYS---SIVIDVNKNQ-MTGFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +   +I ID +  + + G ++DE  YPAS+ 
Sbjct: 20  VMIATLFTGMIFFSYAQRQQAVRVNQPNITGQYAITIDADTGEILYGKREDERSYPASIA 79

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 80  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 134

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG
Sbjct: 135 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASG 176


>gi|300812512|ref|ZP_07092935.1| beta-lactamase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496511|gb|EFK31610.1| beta-lactamase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 428

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 115/253 (45%), Gaps = 31/253 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHL-NTQIPVSKTAA- 111
           ++I +D +  Q+   K    PR  AS+TK++T+Y+  + ++  KL   +T  P +  A  
Sbjct: 48  AAIAVDADSGQILYAKNATTPRQIASMTKLVTVYLTLQAIKQGKLSWTSTAKPTAAIAKI 107

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +QN   S + L     +T ++   A +  SAN  +    + +SG +  F   M       
Sbjct: 108 SQNTEYSNVPLTSGHAYTIKELYRATLIESANGAALTLAQAVSGDQVTFVKKMRELLTSW 167

Query: 170 GMQNTIYKNASGLHD---------------KNQITTARDQAILGILLRKNFPQYYKYFSI 214
           G+++    NA GL +               +N+++ A D AI+   L K+FP+  +  SI
Sbjct: 168 GIKDAKIYNACGLANGSLGSAAYPGVGKDVENEMS-ATDMAIVCQKLLKDFPEVLQTTSI 226

Query: 215 RKFRYRNRI----ITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
               + +      +TN N +L  + +      +DG+KTG T  +G     +++     I+
Sbjct: 227 TSATFSSGSTQSQMTNWNWMLKGLSSYYSDLPVDGLKTGTTDKAGACFAGTVKKNGHRII 286

Query: 265 AVVMGMPTSQERD 277
            VV+G   +  +D
Sbjct: 287 TVVLGAKHANSQD 299


>gi|296113230|ref|YP_003627168.1| D-alanyl-D-alanine carboxypeptidase [Moraxella catarrhalis RH4]
 gi|295920924|gb|ADG61275.1| D-alanyl-D-alanine carboxypeptidase [Moraxella catarrhalis RH4]
          Length = 386

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 107/239 (44%), Gaps = 30/239 (12%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV-------SKTAATQNPSKLYL 120
           G   D  R  AS++K+MT  +I +     +L +  +I +       +K A+T+      L
Sbjct: 155 GKNADVQRSIASISKVMTAMVILD----AELDMREEITLIASDLIGAKQASTR------L 204

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           K     T  +  L ++ RS N  + A      G    F + M+ KA  +GM  T + ++S
Sbjct: 205 KAGDRMTRSEFTLMMLMRSENPAAKALARTYPGGYDAFIVAMNQKAYDLGMYQTKFSDSS 264

Query: 181 GLHDKNQITTARDQAILGILLR--------KNFPQYYKY-FSIRKFRYRNRII--TNHNK 229
           GL  +N +++A D  I+   +         +NF     Y F I  +   +RI    N N+
Sbjct: 265 GLDPRN-MSSANDLLIMMKAVNSSPRYHSIRNFSTAPHYDFYIANYGSGDRIYKGNNTNR 323

Query: 230 LLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           L+ +     G+ KTGY R +G+++V      + P + V++G   S  R   A  ++T  
Sbjct: 324 LVREGAYPIGVQKTGYIREAGYSVVMETNINNRPAIVVLLGASNSANRWSDAETILTEL 382


>gi|301056499|ref|YP_003794710.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis CI]
 gi|300378668|gb|ADK07572.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 279

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 88/162 (54%), Gaps = 15/162 (9%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    I ID +  ++  G ++DE  YPAS+ 
Sbjct: 9   VMIATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIA 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 69  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 123

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG
Sbjct: 124 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASG 165


>gi|239623982|ref|ZP_04667013.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522013|gb|EEQ61879.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 337

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 35/212 (16%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK--LYLKEKTYFTTEQ 130
           E  YPAS+TK+MT  +       ++  L +++ V+  A    P      ++     T EQ
Sbjct: 109 ERMYPASITKIMTALVAI-----REGDLKSRVLVTDDAVITEPGATLCGIEPGDTLTLEQ 163

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  L+  S ND   A    I+GS   FA +M+ +A ++G   T + N  GL+D +  TT
Sbjct: 164 LLYGLMLPSGNDAGAAIAVHIAGSVDAFADMMNEEALRLGATGTHFMNPHGLNDPDHYTT 223

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN-HNK---------------LLNKM 234
           A D  ++       F +  KY   R+         N HNK               +  + 
Sbjct: 224 AYDLYLI-------FNEALKYPVFRQIVGTTAYTANYHNKNSEPVSKTWKGSNWFMTGER 276

Query: 235 HNIDGI-----KTGYTRNSGFNIVTSLRYKDD 261
              DG+     KTG T+ +G+ ++ + R   D
Sbjct: 277 ETPDGLKVFGGKTGTTKAAGYCLIMASRDDSD 308


>gi|228988259|ref|ZP_04148355.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229187255|ref|ZP_04314400.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
 gi|228596265|gb|EEK53940.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
 gi|228771469|gb|EEM19939.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 273

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 88/162 (54%), Gaps = 15/162 (9%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    I ID +  + + G ++DE  YPAS+ 
Sbjct: 3   VMIATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIA 62

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 63  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 117

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG
Sbjct: 118 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASG 159


>gi|228955274|ref|ZP_04117282.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228804407|gb|EEM51018.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 279

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 93/178 (52%), Gaps = 15/178 (8%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    + ID +  ++  G ++DE  YPAS+ 
Sbjct: 9   VMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDADTGEILYGKREDERSYPASIA 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 69  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 123

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        +  D AI+
Sbjct: 124 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAII 181


>gi|229169729|ref|ZP_04297429.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
 gi|228613768|gb|EEK70893.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
          Length = 301

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 82/145 (56%), Gaps = 8/145 (5%)

Query: 56  SIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQ 113
            I ID +  + + G ++DE  YPAS+ KMMT  ++ E ++      + +I V++ A  T+
Sbjct: 64  GITIDADTGKILYGKREDERSYPASIAKMMTTLLLLENVKE-----DEEITVTENAIKTE 118

Query: 114 NPSK-LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           + SK + L+       ++ +  ++  SA+ ++ +  E I+GS+ +F  +M+++AK++G +
Sbjct: 119 SQSKKIKLRAGEKLKRDEALKLMLIISADPIAESIAEHIAGSKNEFVKMMNSRAKELGTK 178

Query: 173 NTIYKNASGLHDKNQITTARDQAIL 197
           +  +KNASG        +  D AI+
Sbjct: 179 HATFKNASGADALGNKVSPYDIAII 203


>gi|118466287|ref|YP_883443.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium 104]
 gi|118167574|gb|ABK68471.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium 104]
          Length = 419

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 98/224 (43%), Gaps = 24/224 (10%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++   +   K    R+ PAS+ K++             L+LN  +P +   A    
Sbjct: 110 LVADLDSGAVIAAKDPHGRHRPASIIKVLVAMAAI-----NTLNLNKAVPGTADDAAAEG 164

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE---KKFAILMSNKAKKIGMQ 172
           +K+ ++E   FT  Q +  L+  S ND + A    + G +   +K  +L    A K+G Q
Sbjct: 165 TKVGVEEGGVFTVNQLLHGLLMHSGNDAAHALAMQLGGMQQALEKINVL----AAKLGGQ 220

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYRNRI------I 224
           +T     SGL      T+A D   +G+  R  +  P +    + R F +          +
Sbjct: 221 DTRVATPSGLDAPGMSTSAYD---IGLFYRYAWQNPTFADIVATRTFDFPGHGDHPGYEL 277

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            N N+LL K     G KTGYT ++G   V +  +    +VAV++
Sbjct: 278 ENDNQLLYKYPGALGGKTGYTDDAGQTFVGAANHDGRRLVAVLL 321


>gi|168704549|ref|ZP_02736826.1| D-alanyl-D-alanine carboxypeptidase [Gemmata obscuriglobus UQM
           2246]
          Length = 304

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 94/230 (40%), Gaps = 23/230 (10%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTY 125
           + G  + +P   AS TK+MT YI+ +        L+  +  S+ A     S   LK    
Sbjct: 61  LWGGNEKDPLPIASTTKIMTAYIVLKLAAEDAKVLDEVLTFSEAADKVVGSSSDLKAGDK 120

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS------GSEKK----FAILMSNKAKKIGMQNTI 175
               + +  L+  S ND + AF E         G E+     F   M+  AK + M  T 
Sbjct: 121 VAVRELLYGLLLPSGNDAAHAFAEHFGPRFKSVGKEQDPVASFVAQMNATAKALKMGETN 180

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY---------RNRIITN 226
           Y +  GL     + + RD   L     K+ P + KY   R+ +          R     N
Sbjct: 181 YLDPHGL--TRNVASPRDLVTLAFHAMKD-PAFAKYVQTRRHKCTVTDKDGNAREVTWNN 237

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
            NKLL+ +   +GIKTG T  +G  +V+      D ++ V +G  +S  R
Sbjct: 238 TNKLLD-IEGYEGIKTGTTTAAGACLVSCGTLNGDRLIVVALGSTSSDNR 286


>gi|196047530|ref|ZP_03114740.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           03BB108]
 gi|196021644|gb|EDX60341.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           03BB108]
          Length = 279

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 88/162 (54%), Gaps = 15/162 (9%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    I ID +  ++  G ++DE  YPAS+ 
Sbjct: 9   VMIATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIA 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 69  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 123

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG
Sbjct: 124 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASG 165


>gi|295091874|emb|CBK77981.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cf.
           saccharolyticum K10]
          Length = 283

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 27/204 (13%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQNPSKLY-LKEKTYFTTEQ 130
           E  YPAS+TK+MT  +  E     +  L+ ++ V++ A  T+  + L  +K     T EQ
Sbjct: 55  EELYPASITKVMTAILAIE-----EGELSDEVTVTQDAVITEAGASLAGIKPGDTLTMEQ 109

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  L+  S ND + A    +SGS + FA  M+ KA+++G  +T +KN +GL D    TT
Sbjct: 110 LLYGLMIPSGNDAANAIAVHMSGSLESFAERMNEKARELGATHTHFKNPNGLTDPEHYTT 169

Query: 191 ARDQAILGILLRK--NFPQYYKYFSIRKF--RYRN---RIITNHNKLLNKMHN------- 236
           A D   L ++  +    P++ +      +   YR+     ++   K+ N   N       
Sbjct: 170 AYD---LYLIFNEALKLPKFREVIGADSYTASYRDADGNTVSKTWKVGNWYQNGEEKAPQ 226

Query: 237 ---IDGIKTGYTRNSGFNIVTSLR 257
              + G KTG T+ +G+ ++ + R
Sbjct: 227 GVTVLGGKTGTTQAAGYCLIMAER 250


>gi|148379813|ref|YP_001254354.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str.
           ATCC 3502]
 gi|148289297|emb|CAL83393.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str.
           ATCC 3502]
 gi|322806091|emb|CBZ03658.1| penicillin-binding protein DacC [Clostridium botulinum H04402 065]
          Length = 378

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 10/195 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK+MT  +  +Y       L+ +I +S+ A     S +  ++       + +  L+ 
Sbjct: 68  ASTTKIMTTLVALKYGD-----LDRKIEISENADKIRGSVVGYRKGEKIALRELLYGLML 122

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           RS ND + A  E I+GS + F+ LM+  A +IG+ N+ +    GL      +TA D A L
Sbjct: 123 RSGNDAAIAIAEGIAGSVEGFSKLMNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLA-L 181

Query: 198 GILLRKNFPQYYKYFS---IRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
                K +  + K  S   ++K  Y   R   N NK+L K+   DG+KTGYT  +G  +V
Sbjct: 182 ATATAKKYELFNKIVSSKDVKKEEYNFTRDYHNINKILWKIPEADGVKTGYTGKAGKCLV 241

Query: 254 TSLRYKDDPIVAVVM 268
           TS +   + I+ VV+
Sbjct: 242 TSSKINGNDIIIVVL 256


>gi|218234016|ref|YP_002369811.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           B4264]
 gi|229049698|ref|ZP_04194255.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
 gi|229153200|ref|ZP_04281379.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
 gi|296505443|ref|YP_003667143.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
 gi|218161973|gb|ACK61965.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus B4264]
 gi|228630299|gb|EEK86949.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
 gi|228722611|gb|EEL73999.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
 gi|296326495|gb|ADH09423.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
          Length = 279

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 93/178 (52%), Gaps = 15/178 (8%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    + ID +  + + G ++DE  YPAS+ 
Sbjct: 9   VMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDADTGEVLYGKREDERSYPASIA 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 69  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 123

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        +  D AI+
Sbjct: 124 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAII 181


>gi|125718743|ref|YP_001035876.1| penicillin-binding protein 3 [Streptococcus sanguinis SK36]
 gi|125498660|gb|ABN45326.1| Penicillin-binding protein 3, putative [Streptococcus sanguinis
           SK36]
          Length = 419

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 121/273 (44%), Gaps = 39/273 (14%)

Query: 33  KILFLSI-IMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQDE--PRYPASLTKMM 84
           K LFL + +++ M +   A   +     S++ +D    ++  +++D   P    S+T ++
Sbjct: 2   KRLFLCLLVLVGMTASKVAADDFNIAAKSAMAVDATSGKIL-YEKDANTPIEVGSITNLL 60

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFTTEQGILALITRSA 140
           T+Y+++E +    L  +T + +S  A   T NP  S + L+ K Y   +  I A +  S+
Sbjct: 61  TVYLVYEAIDRGDLTADTYVDISDYAYNLTANPNISNVPLEAKRY-KVKDLIAASLMSSS 119

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------------- 183
           N  + A  E + GSE+ F  +M  K K+ G+++    N++GL+                 
Sbjct: 120 NSATIALAEKVGGSEENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETDYTSTA 179

Query: 184 ----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN--- 236
               D     +A D A++   L  +FPQ     S    +     + N+N +L    N   
Sbjct: 180 KKSKDTENKFSAYDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSNFRS 239

Query: 237 -IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            +DG+K G +   G + V +       ++ VV+
Sbjct: 240 GVDGLKAGSSDKGGSSFVATTTENGIRMITVVL 272


>gi|41409546|ref|NP_962382.1| hypothetical protein MAP3448 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41398377|gb|AAS05998.1| hypothetical protein MAP_3448 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 394

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 98/224 (43%), Gaps = 24/224 (10%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++   +   K    R+ PAS+ K++             L+LN  +P +   A    
Sbjct: 85  LVADLDSGAVIAAKDPHGRHRPASIIKVLVAMAAI-----NTLNLNKAVPGTADDAAAEG 139

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE---KKFAILMSNKAKKIGMQ 172
           +K+ ++E   FT  Q +  L+  S ND + A    + G +   +K  +L    A K+G Q
Sbjct: 140 TKVGVEEGGVFTVNQLLHGLLMHSGNDAAHALAMQLGGMQQALEKINVL----AAKLGGQ 195

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYRNRI------I 224
           +T     SGL      T+A D   +G+  R  +  P +    + R F +          +
Sbjct: 196 DTRVATPSGLDAPGMSTSAYD---IGLFYRYAWQNPTFADIVATRTFDFPGHGDHPGYEL 252

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            N N+LL K     G KTGYT ++G   V +  +    +VAV++
Sbjct: 253 ENDNQLLYKYPGALGGKTGYTDDAGQTFVGAANHDGRRLVAVLL 296


>gi|78189048|ref|YP_379386.1| D-alanyl-D-alanine carboxypeptidase [Chlorobium chlorochromatii
           CaD3]
 gi|78171247|gb|ABB28343.1| D-alanyl-D-alanine carboxypeptidase [Chlorobium chlorochromatii
           CaD3]
          Length = 473

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 15/210 (7%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           P  PASLTK++T  +  E  +     L   + +++ +    PSK              + 
Sbjct: 85  PLPPASLTKVLTSIMAIESGR-----LLQDVVITRESTLVEPSKAGFTVGERIKLIDLVK 139

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ----IT 189
           A +  S+ND + A G ++SGS   F   M+ KA++IGM+N+ + N +G +D+ Q    ++
Sbjct: 140 AAMVSSSNDAAFAIGIYLSGSVDAFVDAMNYKARQIGMRNSHFTNPAG-YDRGQYAGNVS 198

Query: 190 TARDQAILGILLRKN--FPQYYKYFSIRKFRYRNRIITN---HNKLLNKMHNIDGIKTGY 244
           TA D   L     +N  F Q  +           R + N   HNKLL    +  GIKTG+
Sbjct: 199 TAEDLMRLTEYAVRNSTFNQIARMDRAVFVEQSTRKVYNLRTHNKLLAHYPHSVGIKTGW 258

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           T  +G  ++      D  ++ V++    S+
Sbjct: 259 TTRAGGCLIARAVKGDKDLLVVMLNAKISR 288


>gi|16077078|ref|NP_387891.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221307819|ref|ZP_03589666.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|221312141|ref|ZP_03593946.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221317074|ref|ZP_03598368.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221321337|ref|ZP_03602631.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Bacillus subtilis subsp. subtilis str. SMY]
 gi|585034|sp|P08750|DACA_BACSU RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA;
           Short=CPase; Short=DD-carboxypeptidase;
           Short=DD-peptidase; AltName: Full=Penicillin-binding
           protein 5; Short=PBP-5; Flags: Precursor
 gi|467400|dbj|BAA05246.1| D-alanine carboxypeptidase (PBP-5) [Bacillus subtilis]
 gi|2632277|emb|CAB11786.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 443

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 129/264 (48%), Gaps = 38/264 (14%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY--------SSIVIDVNKNQMTGFKQDEPR 75
           I++  QL+  ++ L++ +  +A    AK           ++I+I+ +  ++   K  + R
Sbjct: 3   IKKCKQLLMSLVVLTLAVTCLAPMSKAKAASDPIDINASAAIMIEASSGKILYSKNADKR 62

Query: 76  YP-ASLTKMMTLYIIFEYLQSKKLHLN-TQIP---VSKTAATQNPSKLYLKEKTYFTTEQ 130
            P AS+TKMMT Y++ E +   K+  + T  P   V + +   + S + L++   +T ++
Sbjct: 63  LPIASMTKMMTEYLLLEAIDQGKVKWDQTYTPDDYVYEISQDNSLSNVPLRKDGKYTVKE 122

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN---- 186
              A    SAN  + A  E ++GSE KF   M+ KAK++G+ +  + NA+GL +K+    
Sbjct: 123 LYQATAIYSANAAAIAIAEIVAGSETKFVEKMNAKAKELGLTDYKFVNATGLENKDLHGH 182

Query: 187 ----------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL 231
                        +A+D A+L   L  ++P+  +  SI K ++R        + N N +L
Sbjct: 183 QPEGTSVNEESEVSAKDMAVLADHLITDYPEILETSSIAKTKFREGTDDEMDMPNWNFML 242

Query: 232 N------KMHNIDGIKTGYTRNSG 249
                  K   +DG+KTG T ++G
Sbjct: 243 KGLVSEYKKATVDGLKTGSTDSAG 266


>gi|326201438|ref|ZP_08191309.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           papyrosolvens DSM 2782]
 gi|325988038|gb|EGD48863.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           papyrosolvens DSM 2782]
          Length = 298

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 92/214 (42%), Gaps = 11/214 (5%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPASLTK+MT  +  E +   K  +       +     + S    +          +  +
Sbjct: 70  YPASLTKIMTAIVALENIHDLKEEIKLTNSTFRGLYEADASMAGFQPGEQVRALDLLYGV 129

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S  +        ++GS++ F  +M+ KA K+GM+NT ++N +GL ++N  TT  D A
Sbjct: 130 LLPSGAECCVGLANKVAGSQQNFVKMMNEKAAKLGMKNTHFENVTGLQNENHYTTVADLA 189

Query: 196 ILGILLRKN--FPQYY--KYFSIRKFRYRNRIITNHNKLLNKMHN-------IDGIKTGY 244
           IL     KN  F + +    +S +        IT ++ +  K++N       I G KTGY
Sbjct: 190 ILLSYSLKNDTFREIFTSARYSTKPTNKHTDGITFNSTMFEKLNNKKITGGEILGGKTGY 249

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           T  +G  + +  +      V V  G       +Q
Sbjct: 250 TSAAGLCLASLSKVGTQEYVFVTAGAKGDSHSEQ 283


>gi|228936311|ref|ZP_04099110.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823427|gb|EEM69260.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 273

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 88/162 (54%), Gaps = 15/162 (9%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    I ID +  + + G ++DE  YPAS+ 
Sbjct: 3   VMIATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIA 62

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 63  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 117

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG
Sbjct: 118 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASG 159


>gi|153933846|ref|YP_001384111.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str.
           ATCC 19397]
 gi|153934860|ref|YP_001387651.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str.
           Hall]
 gi|152929890|gb|ABS35390.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           botulinum A str. ATCC 19397]
 gi|152930774|gb|ABS36273.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           botulinum A str. Hall]
          Length = 378

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 10/195 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK+MT  +  +Y       L+ +I +S+ A     S +  ++       + +  L+ 
Sbjct: 68  ASTTKIMTTLVALKYGD-----LDRKIEISENADKIRGSVVGYRKGEKIALRELLYGLML 122

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           RS ND + A  E I+GS + F+ LM+  A +IG+ N+ +    GL      +TA D A L
Sbjct: 123 RSGNDAAIAIAEGIAGSVEGFSKLMNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLA-L 181

Query: 198 GILLRKNFPQYYKYFS---IRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
                K +  + K  S   ++K  Y   R   N NK+L K+   DG+KTGYT  +G  +V
Sbjct: 182 ATATAKKYELFNKIVSSKDVKKEEYNFTRDYHNINKILWKIPEADGVKTGYTGKAGKCLV 241

Query: 254 TSLRYKDDPIVAVVM 268
           TS +   + I+ VV+
Sbjct: 242 TSSKINGNDIIIVVL 256


>gi|167461903|ref|ZP_02326992.1| D-alanyl-D-alanine carboxypeptidase [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 317

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 110/241 (45%), Gaps = 39/241 (16%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKL-----HLNTQIPVSK 108
           ++ V+D++  +   +K +  + YPAS TK+++  +  E      +      +N +     
Sbjct: 61  AAFVMDLDSGETLFYKNENKKMYPASTTKILSALVALEKGNPNDVITVGDEVNLKTAGES 120

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK----------- 157
           +A      KL L++         I  ++  S ND +     +++  +K            
Sbjct: 121 SAGLVQGQKLKLRDL--------IAGMMLPSGNDAARTVSRYVANRDKGKNISADEANVY 172

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           FA LM+ KAK+IG   + + N+ GLHD    +T  D A++     KN  + ++   + K 
Sbjct: 173 FAGLMNKKAKEIGATKSHFVNSHGLHDPEHYSTVHDMALIAKEAMKN--ELFRNI-VSKE 229

Query: 218 RYRN------RIITNHNKLL---NKMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
            Y        +   N NKLL   N ++   ++GIKTG+T  +G+ +V+S R     +++V
Sbjct: 230 SYTTAAAKPAQTYVNRNKLLLQDNPVYYSGVNGIKTGFTDEAGYCLVSSARKNGKNLISV 289

Query: 267 V 267
           V
Sbjct: 290 V 290


>gi|325913382|ref|ZP_08175749.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners UPII
           60-B]
 gi|325477308|gb|EGC80453.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners UPII
           60-B]
          Length = 434

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 117/244 (47%), Gaps = 29/244 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK--TAA 111
           ++I+ D+   Q+   K  + + P AS++K++T+Y+  + +++ KL   T++  S+   A 
Sbjct: 73  AAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAIKAGKLSWQTKVMPSREAIAV 132

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           ++NP  S + L+    +T +Q   A + +SAN  +      ++GS KKF  +M  +    
Sbjct: 133 SKNPEYSNVPLQLGHQYTIKQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRKQLLDW 192

Query: 170 GMQNTIYKNASGL--------HDKNQITTARDQ---AILGILLRK---NFPQYYKYFSIR 215
            +        SGL         D N+   A ++   + +GIL++     FPQ  +   I 
Sbjct: 193 HISQAQIVTPSGLPNFTLGRDADSNKNADAENELSASDMGILIKHLLLEFPQVLETTRIA 252

Query: 216 KFRY----RNRIITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           K  +    +   + N N +L      N+ + +DG+KTG T  +G  + ++L      IV 
Sbjct: 253 KLDFLDGRKTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGACLASTLVKNGRRIVT 312

Query: 266 VVMG 269
           V++G
Sbjct: 313 VIIG 316


>gi|322381652|ref|ZP_08055618.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154392|gb|EFX46702.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 322

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 110/241 (45%), Gaps = 39/241 (16%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKL-----HLNTQIPVSK 108
           ++ V+D++  +   +K +  + YPAS TK+++  +  E      +      +N +     
Sbjct: 66  AAFVMDLDSGETLFYKNENKKMYPASTTKILSALVALEKGNPNDVITVGDEVNLKTAGES 125

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK----------- 157
           +A      KL L++         I  ++  S ND +     +++  +K            
Sbjct: 126 SAGLVQGQKLKLRDL--------IAGMMLPSGNDAARTVSRYVANRDKGKNISADEANVY 177

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           FA LM+ KAK+IG   + + N+ GLHD    +T  D A++     KN  + ++   + K 
Sbjct: 178 FAGLMNKKAKEIGATKSHFVNSHGLHDPEHYSTVHDMALIAKEAMKN--ELFRNI-VSKE 234

Query: 218 RYRN------RIITNHNKLL---NKMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
            Y        +   N NKLL   N ++   ++GIKTG+T  +G+ +V+S R     +++V
Sbjct: 235 SYTTAAAKPAQTYVNRNKLLLQDNPVYYSGVNGIKTGFTDEAGYCLVSSARKNGKNLISV 294

Query: 267 V 267
           V
Sbjct: 295 V 295


>gi|302386416|ref|YP_003822238.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           saccharolyticum WM1]
 gi|302197044|gb|ADL04615.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           saccharolyticum WM1]
          Length = 322

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 14/146 (9%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQNPSKLY-LKEKTYFTTEQ 130
           E  YPAS+TK MT  I  +Y      +L  ++ V+  A  T+  + L  +K     T EQ
Sbjct: 94  ERLYPASITKTMTALIALKYG-----NLTDEVTVTGDAVITEAGASLCGIKPGDKLTMEQ 148

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  L+  S ND   A    I+G   +F+ +M+ +A KIG   T + N  GL+D+N  TT
Sbjct: 149 LLYGLMLPSGNDAGAAIATHIAGGIDQFSQMMNEEAGKIGATGTHFLNPHGLNDENHYTT 208

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRK 216
           A D  ++       F +  KY   RK
Sbjct: 209 AYDLYLI-------FNEALKYPEFRK 227


>gi|271962810|ref|YP_003337006.1| D-alanyl-D-alanine carboxypeptidase [Streptosporangium roseum DSM
           43021]
 gi|270505985|gb|ACZ84263.1| D-alanyl-D-alanine carboxypeptidase [Streptosporangium roseum DSM
           43021]
          Length = 369

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 105/238 (44%), Gaps = 20/238 (8%)

Query: 41  MISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSK 96
           ++S A  + A PK ++   +V D    ++   K    RY PAS  K +T   +       
Sbjct: 40  LVSPAG-VKAPPKTAAKSYVVADAETGEVLAAKDPHGRYLPASTLKALTALTLIP----- 93

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           KL  + ++  S  A  +  S + L  K  +T +    AL+  S ND + A  E   G  K
Sbjct: 94  KLDKDLKVKPSSRAVNEEGSAVGLVSKPIYTVDDLFKALMLVSGNDCAMALAEANGGLAK 153

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG--ILLRKNFPQYYKY--- 211
                M+ +A+++   +T+ K  SGL    Q ++A D A++    L   +F +Y      
Sbjct: 154 TLRD-MNTEAQRLQAFDTVAKTPSGLDKPGQSSSAYDLALIARAGLANDDFQRYISTKVD 212

Query: 212 -FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            F   K  Y    I NHNKLL +   + G+K G+T  +  + V + R     I+  VM
Sbjct: 213 KFPAPKGYYE---IGNHNKLLWRYKGMIGVKNGWTSKALGSFVGAARRNGHTIIVSVM 267


>gi|145542863|ref|XP_001457118.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124424933|emb|CAK89721.1| unnamed protein product [Paramecium tetraurelia]
          Length = 351

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 62/127 (48%), Gaps = 20/127 (15%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
             LTK+M +Y I +  Q  K+ L  Q+P    +  +   K  L    YFT EQ + ALI 
Sbjct: 130 GCLTKLMAIYTILQLCQDYKIRL--QVPYYAESVPE--PKADLNSYNYFTLEQLLYALIL 185

Query: 138 RSANDVSTAFGEFISG-SEKKFAI----LMSNK--------AKKIGMQNTIYKNASGLHD 184
           R  ND   A    +SG SEK + I    L+ NK        A+++ M NT Y N  GL D
Sbjct: 186 RGGND---ALWSIVSGLSEKLYGITQRNLIKNKFLDLYNRNAQQLKMNNTRYTNLEGLAD 242

Query: 185 KNQITTA 191
            N +TTA
Sbjct: 243 PNNVTTA 249


>gi|319936455|ref|ZP_08010871.1| serine-type D-Ala-D-Ala carboxypeptidase [Coprobacillus sp. 29_1]
 gi|319808570|gb|EFW05122.1| serine-type D-Ala-D-Ala carboxypeptidase [Coprobacillus sp. 29_1]
          Length = 337

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 111/252 (44%), Gaps = 13/252 (5%)

Query: 31  MGKILFLSIIMISMASELHAKP--KYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLY 87
           M KI F+  +     + +HA      S IV+D  NK  +    +   +  AS++K+MT  
Sbjct: 1   MKKIFFVICVFFMSVTPIHAMDFSGKSYIVMDTFNKTVLEAKNEHYVQSVASISKIMTAI 60

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           +  E       +L+ +  + +       S +Y+    +      +  L+ RS ND +   
Sbjct: 61  VAIE-----NGNLDDEYEIGEEVNQAWGSGVYIHIGDHINLRDLLHGLLLRSGNDAANVI 115

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--HDKNQITTARDQAILGILLRKNF 205
            + I G    F  +M+ KAK IGM ++++ NA+GL   D    ++A D A+L     +N 
Sbjct: 116 AKNIGGDIPHFVEMMNKKAKDIGMNDSVFSNATGLDEEDAGNRSSAYDMALLMSYCSQN- 174

Query: 206 PQYYKYFSIRKFRYRNRIITNHNK--LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           P +      + ++  +   T HNK  LL +     G KTG+T+ +   +VT     D  +
Sbjct: 175 PIFNDIVMKQTYKREDGGGTWHNKNRLLEEYEYCVGGKTGFTKKARRTLVTRAIKNDVSL 234

Query: 264 VAVVMGMPTSQE 275
           V V +      E
Sbjct: 235 VIVTLNCGNDFE 246


>gi|327468250|gb|EGF13735.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK330]
          Length = 422

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 122/276 (44%), Gaps = 42/276 (15%)

Query: 33  KILFLSI-IMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQDE--PRYPASLTKMM 84
           K LFL + +++ M +   A   +     S++ +D    ++  +++D   P    S+T ++
Sbjct: 2   KRLFLCLLVLVGMTASKVAADDFNIAAKSAMAVDATSGKIL-YEKDANTPIEVGSITNLL 60

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFTTEQGILALITRSA 140
           T+Y+++E +    L  +T + +S  A   T NP  S + L+ K Y   +  I A +  S+
Sbjct: 61  TVYLVYEAIDRGDLTADTYVDISDYAYNLTSNPNISNVPLEAKRY-KVKDLIAASLMSSS 119

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------------- 183
           N  + A  E + GSE+ F  +M  K K+ G+++    N++GL+                 
Sbjct: 120 NSATIALAEKVGGSEENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYGTSA 179

Query: 184 -------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN 236
                  D     +A D A++   L  +FPQ  +  S    +     + N+N +L    N
Sbjct: 180 STAKKSKDAENKFSAYDLAVISRHLIMDFPQVTEITSKSTAKIAGTSLENYNFMLENQSN 239

Query: 237 ----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
               +DG+K G +   G + V +       ++ VV+
Sbjct: 240 FRSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVL 275


>gi|327460573|gb|EGF06908.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK1]
          Length = 422

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 121/277 (43%), Gaps = 41/277 (14%)

Query: 31  MGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQDE--PRYPASLTKM 83
           M ++    ++++ M +   A   +     S++ +D    ++  +++D   P    S+T +
Sbjct: 1   MKRLFLCLLVLVGMTASKVAADDFNIAAKSAMAVDATSGKIL-YEKDANTPIEVGSITNL 59

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFTTEQGILALITRS 139
           +T+Y+++E +    L  +T + +S  A   T NP  S + L+ K Y   +  I A +  S
Sbjct: 60  LTVYLVYEAIDRGDLTADTYVDISDYAYNLTSNPNISNVPLEAKRY-KVKDLIAASLMSS 118

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------------- 183
           +N  + A  E + GSE+ F  +M  K K+ G+++    N++GL+                
Sbjct: 119 SNSATIALAEKVGGSEENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYSAS 178

Query: 184 --------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
                   D     +A D A++   L  +FPQ  +  S    +     + N+N +L    
Sbjct: 179 ASTFKKSKDTENKFSAYDLAVISRHLIMDFPQVTEITSKSTAKIAGTSLENYNFMLENQS 238

Query: 236 N----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N    +DG+K G +   G + V +       ++ VV+
Sbjct: 239 NFRSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVL 275


>gi|194334807|ref|YP_002016667.1| Serine-type D-Ala-D-Ala carboxypeptidase [Prosthecochloris
           aestuarii DSM 271]
 gi|194312625|gb|ACF47020.1| Serine-type D-Ala-D-Ala carboxypeptidase [Prosthecochloris
           aestuarii DSM 271]
          Length = 317

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 119/258 (46%), Gaps = 35/258 (13%)

Query: 34  ILFLSIIMISMASELHAKPKY--------SSIVIDVNKNQMTGFKQDEPRY-PASLTKMM 84
           ++F    + S+A E HAK           S I+ D+ ++ +   K    R+ PASLTK++
Sbjct: 25  LMFFCFPVPSIA-EPHAKDSLKVEPLDIASYILKDIGRSTVLLEKDPGTRHEPASLTKIL 83

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T  I  E   S +L+    IP+  T      +     EK        + A + +S+ND +
Sbjct: 84  TCIIAIE---SARLNEFVTIPLEATQVEPTKAGFLPGEKIRLLDL--VKAAMVKSSNDAA 138

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI----TTARDQAILGIL 200
            A    + GS + FA +M+ KA ++G+ ++ + N +G  D++Q     +TA D   L   
Sbjct: 139 FAIAIHLGGSVQGFAAMMNAKAAELGLSHSCFTNPAGF-DRHQYVGHYSTAGDMLRLTEY 197

Query: 201 LRKNFPQYYKYF------SIRKFR----YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
              N  Q + Y       SI + R    YR   +   NKLL++     GIKTGYT  +G 
Sbjct: 198 AIGN--QIFNYIAGLDEVSITEKRSGKIYR---LKTSNKLLHRYPYAVGIKTGYTFRAGK 252

Query: 251 NIVTSLRYKDDPIVAVVM 268
            ++   +  D  +V V++
Sbjct: 253 CLIARAKKGDRDVVLVML 270


>gi|163942729|ref|YP_001647613.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
 gi|163864926|gb|ABY45985.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
          Length = 279

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 81/145 (55%), Gaps = 8/145 (5%)

Query: 56  SIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQ 113
            I ID +  ++  G ++DE  YPAS+ KMMT  ++ E ++      + +I V++ A  T+
Sbjct: 42  GITIDADTGEILYGKREDERSYPASIGKMMTTLLLLENVKE-----DEEITVTENAIKTE 96

Query: 114 NPSK-LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           + SK + L+       ++ +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G +
Sbjct: 97  SQSKKIKLRAGEKLKRDEALKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTK 156

Query: 173 NTIYKNASGLHDKNQITTARDQAIL 197
           +  +KNASG        +  D AI+
Sbjct: 157 HATFKNASGADALGNKVSPYDIAII 181


>gi|309807067|ref|ZP_07701047.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners
           LactinV 03V1-b]
 gi|312870869|ref|ZP_07730974.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF
           3008A-a]
 gi|308166563|gb|EFO68762.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners
           LactinV 03V1-b]
 gi|311093559|gb|EFQ51898.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF
           3008A-a]
          Length = 385

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 116/244 (47%), Gaps = 29/244 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK--TAA 111
           ++I+ D+   Q+   K  + + P AS++K++T+Y+  + +++ KL   T++  S+   A 
Sbjct: 24  AAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAIKAGKLSWQTKVMPSREAIAV 83

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           ++NP  S + L+    +T  Q   A + +SAN  +      ++GS KKF  +M  +    
Sbjct: 84  SKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRKQLLDW 143

Query: 170 GMQNTIYKNASGL--------HDKNQITTARDQ---AILGILLRK---NFPQYYKYFSIR 215
            +        SGL         D N+   A ++   + +GIL++     FPQ  +   I 
Sbjct: 144 HISQAQIVTPSGLPNFTLGRDADSNKNADAENELSASDMGILIKHLLLEFPQVLETTRIA 203

Query: 216 KFRY----RNRIITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           K  +    +   + N N +L      N+ + +DG+KTG T  +G  + ++L      I+ 
Sbjct: 204 KLDFLDGRKTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGACLASTLVKNGRRIIT 263

Query: 266 VVMG 269
           V++G
Sbjct: 264 VIIG 267


>gi|225866993|ref|YP_002752371.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           03BB102]
 gi|225787746|gb|ACO27963.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 03BB102]
          Length = 279

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 87/162 (53%), Gaps = 15/162 (9%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    I ID +  ++  G ++DE  YPAS+ 
Sbjct: 9   VMIATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIA 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E +       + +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 69  KMMTTLLLLENVTE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 123

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG
Sbjct: 124 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASG 165


>gi|313900621|ref|ZP_07834114.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. HGF2]
 gi|312954683|gb|EFR36358.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. HGF2]
          Length = 306

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 25/210 (11%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS---KTAATQNPSKLYLKEKTYF 126
           +++E   PASLTK+MT+Y   +++    L    +IP S   +    Q     +L ++   
Sbjct: 69  REEEAIAPASLTKLMTVYTALQHIDD--LQKTVRIPASIFPQLEKEQASMAGFLPDEE-V 125

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           T E  I   +  S  D        + GSE  F   M+ +A+K+ ++ T ++N +GL +  
Sbjct: 126 TYEDLIYGALLPSGADACMTLAISLYGSEDAFVAEMNAQAEKLKLKQTRFQNCTGLDEAG 185

Query: 187 QITTARDQA-ILGILLRKNFPQYYKYFSIRKFRYRN--------------RIITNHNKLL 231
            +++ RD A IL   L+   P++ + F    +                  R+  + N+L 
Sbjct: 186 HVSSVRDIAWILDEALK--LPKFAEAFHATNYVMAPSNMHPEGMTIYSTMRMTMDQNEL- 242

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
               +I G KTGYT+ +G  + T  R  ++
Sbjct: 243 -SQDDILGGKTGYTKKAGLCLATQARIHEE 271


>gi|229158612|ref|ZP_04286671.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
 gi|228624926|gb|EEK81694.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
          Length = 273

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 88/162 (54%), Gaps = 15/162 (9%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    I ID +  + + G ++DE  YPAS+ 
Sbjct: 3   VMIATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIA 62

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 63  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 117

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG
Sbjct: 118 ADPIAESIAEHIAGSKNEFLKMMNARAKELGTKHATFKNASG 159


>gi|325911591|ref|ZP_08173999.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners UPII
           143-D]
 gi|325476577|gb|EGC79735.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners UPII
           143-D]
          Length = 425

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 116/244 (47%), Gaps = 29/244 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK--TAA 111
           ++I+ D+   Q+   K  + + P AS++K++T+Y+  + +++ KL   T++  S+   A 
Sbjct: 64  AAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAIKAGKLSWQTKVMPSREAIAV 123

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           ++NP  S + L+    +T  Q   A + +SAN  +      ++GS KKF  +M  +    
Sbjct: 124 SKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRKQLLDW 183

Query: 170 GMQNTIYKNASGL--------HDKNQITTARDQ---AILGILLRK---NFPQYYKYFSIR 215
            +        SGL         D N+   A ++   + +GIL++     FPQ  +   I 
Sbjct: 184 HISQAQIVTPSGLPNFTLGRDADSNKNADAENELSASDMGILIKHLLLEFPQVLETTRIA 243

Query: 216 KFRY----RNRIITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           K  +    +   + N N +L      N+ + +DG+KTG T  +G  + ++L      IV 
Sbjct: 244 KLDFLDGRKTFKMVNWNLMLKGLSQYNETYPVDGLKTGTTDAAGACLASTLVKNGRRIVT 303

Query: 266 VVMG 269
           V++G
Sbjct: 304 VIIG 307


>gi|325265477|ref|ZP_08132200.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
 gi|324029335|gb|EGB90627.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
          Length = 476

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 108/235 (45%), Gaps = 27/235 (11%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S++V+D+     + G   D   +PAS+TK++T  +  E        L  ++  ++ + + 
Sbjct: 89  SAVVMDMESGAILYGKNMDAKHFPASITKLLTTLVALE-----NADLTDKVKFTEDSISF 143

Query: 113 --QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-----GSEKKFAILMSNK 165
              + +++ +K     + E  + A++  SAN+VS A  E +      G+   F   M+++
Sbjct: 144 LQYDDAQIGMKVGEELSLEDSLHAVLLASANEVSHAVAESVGELRLGGNYDTFIQKMNDR 203

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
           AK++G  N+ + N +GLHD    TTA D A++   + +   ++       +++     +T
Sbjct: 204 AKELGCTNSHWVNPNGLHDDEHYTTAHDMALIASAVYQQ-EEFRTIMGKLEYKIGATNLT 262

Query: 226 NHNKLLNKMHNI------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              ++  + H +             G KTGYT  +   +VT     D  + AVV+
Sbjct: 263 QEERVFQQNHKMLWPENYYYYEYCTGGKTGYTDQAKTTLVTMADNGDMHLAAVVL 317


>gi|229032648|ref|ZP_04188611.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
 gi|228728647|gb|EEL79660.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
          Length = 301

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 89/162 (54%), Gaps = 15/162 (9%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYS---SIVIDVNKNQ-MTGFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +   +I ID +  + + G ++DE  YPAS+ 
Sbjct: 31  VMIATLFTGMIFFSYAQRQQAVRADQPSITGQYAITIDADTGEILYGKREDERSYPASIA 90

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I +++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 91  KMMTTLLLLENVKE-----DEEITITENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 145

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG
Sbjct: 146 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASG 187


>gi|229823246|ref|ZP_04449315.1| hypothetical protein GCWU000282_00544 [Catonella morbi ATCC 51271]
 gi|229787412|gb|EEP23526.1| hypothetical protein GCWU000282_00544 [Catonella morbi ATCC 51271]
          Length = 405

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 120/260 (46%), Gaps = 34/260 (13%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-- 111
           S +VID + +++   ++    YP AS++K+M++Y+ ++ ++  K+ L+ +I V +     
Sbjct: 70  SYVVIDQDTHKVLMEREGNKPYPIASMSKIMSVYLTYKAIEEGKIKLDDKIKVPEAIVRD 129

Query: 112 -TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            T N   S   L     +T +  +  ++  S ND +T     I GSE++    +  +  +
Sbjct: 130 FTDNAELSNAGLVTDAEYTVQDLLYGIMLASGNDATTLLMSHIYGSEQEAVAAIRRQLDE 189

Query: 169 IGMQNTIYKNASGLHDK----------------NQITTARDQAILGILLRKNFPQYYKYF 212
            G++N  +   SG  +K                N+++ A D A++   + + +PQ  +  
Sbjct: 190 WGIENYEFYTTSGAPNKYLPESYWIEGSTKDSQNKMSAA-DVALMAQYITEKYPQILELS 248

Query: 213 SIRKFRYRNRI-----ITNHNKLLNKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           S R++           + N+N LL         + G+K+GYT  +G   VT+       +
Sbjct: 249 SAREYTMAKDSDHPIKMANNNLLLEGAQYGRPGVTGLKSGYTDEAGKCFVTTTTENGRKM 308

Query: 264 VAVVMGM--PTSQERDQKAL 281
           +AVVMG+  P S   + K L
Sbjct: 309 IAVVMGVQEPYSSYEETKIL 328


>gi|229014198|ref|ZP_04171319.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
 gi|228747152|gb|EEL97034.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
          Length = 301

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 81/145 (55%), Gaps = 8/145 (5%)

Query: 56  SIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQ 113
            I ID +  + + G ++DE  YPAS+ KMMT  ++ E ++      + +I V++ A  T+
Sbjct: 64  GITIDADTGEILYGKREDERSYPASIGKMMTTLLLLENVKE-----DEEITVTENAIKTE 118

Query: 114 NPSK-LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           + SK + L+       ++ +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G +
Sbjct: 119 SQSKKIKLRAGEKLKRDEALKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTK 178

Query: 173 NTIYKNASGLHDKNQITTARDQAIL 197
           +  +KNASG        +  D AI+
Sbjct: 179 HATFKNASGADALGNKVSPYDIAII 203


>gi|104774384|ref|YP_619364.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|103423465|emb|CAI98355.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
          Length = 428

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 115/253 (45%), Gaps = 31/253 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHL-NTQIPVSKTAA- 111
           ++I +D +  Q+   K    PR  AS+TK++T+Y+  + ++  KL   +T  P +  A  
Sbjct: 48  AAIAVDADSGQILYAKNATTPRQIASMTKLVTVYLTLQAIKQGKLSWTSTAKPTAAIAKI 107

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +QN   S + L     +T ++   A +  SAN  +    + +SG +  F   M       
Sbjct: 108 SQNTEYSNVPLTSGHAYTIKELYRATLIESANGAALTLAQAVSGDQVTFIKKMRKLLTSW 167

Query: 170 GMQNTIYKNASGLHD---------------KNQITTARDQAILGILLRKNFPQYYKYFSI 214
           G+++    NA GL +               +N+++ A D AI+   L K+FP+  +  SI
Sbjct: 168 GIKDAKIYNACGLANGSLGSAAYPGVGKDVENEMS-ATDMAIVCQKLLKDFPEVLQTTSI 226

Query: 215 RKFRYRNRI----ITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
               + +      +TN N +L  + +      +DG+KTG T  +G     +++     I+
Sbjct: 227 TSATFSSGSTQSQMTNWNWMLKGLSSYYSDLPVDGLKTGTTDKAGACFAGTVKKNGHRII 286

Query: 265 AVVMGMPTSQERD 277
            VV+G   +  +D
Sbjct: 287 TVVLGAKHANSQD 299


>gi|223933668|ref|ZP_03625645.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus suis
           89/1591]
 gi|330833493|ref|YP_004402318.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus suis ST3]
 gi|223897661|gb|EEF64045.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus suis
           89/1591]
 gi|329307715|gb|AEB82131.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus suis ST3]
          Length = 413

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 127/262 (48%), Gaps = 33/262 (12%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP--ASLTKMMTLYIIFEYLQSKKLHLN 101
           +A +     K++ I ++V+  ++  ++QD       AS++K +++Y+++E L   ++ L+
Sbjct: 22  LAEDFSVAAKHA-IAVEVSSGKIL-YEQDAETKASIASISKTLSIYLVYEALAKGEITLD 79

Query: 102 TQI-----PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           T +     P S T+ T+  S + L  ++Y   +    +LIT S+N    A  E I+GSE 
Sbjct: 80  TMVDISDYPYSLTSNTE-LSNVNLDARSYSVRDLLNASLIT-SSNSAIIALAEKIAGSEA 137

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKN--------------QITTARDQAILGILLR 202
            F   M  K ++ G+ +T   N SGL + +               + +A D AI+   L 
Sbjct: 138 AFVDRMKAKVQEWGITDTKIVNVSGLDNTDLGENIYPGSSPEDVNMFSALDVAIIARRLI 197

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMH---NIDGIKTGYTRNSGFNIVTSLRY 258
            ++PQ     S+  + +      + N++L +  H    +DG+KTG + ++G + + + + 
Sbjct: 198 LDYPQVLDITSLNAYDFGGYTYYSTNQMLSDGTHARGGVDGLKTGTSNSAGSSFLATTQQ 257

Query: 259 KDDPIVAVVM----GMPTSQER 276
               I+ VV+    G+ + + R
Sbjct: 258 AGMRIITVVLNANDGLTSPENR 279


>gi|290581230|ref|YP_003485622.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus mutans
           NN2025]
 gi|254998129|dbj|BAH88730.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus mutans
           NN2025]
          Length = 413

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 126/267 (47%), Gaps = 30/267 (11%)

Query: 31  MGKILFLSIIMISM------ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           M KI+ L  I+IS+      A E        +I ++ N  ++   K  D     AS+TKM
Sbjct: 1   MKKIVCLLFILISLIGFGVKAEENFDVSAKHAIAVEANTGKILYEKDADTTAGIASITKM 60

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALITRS 139
           +T+Y++++ ++S  L  ++++ +S    +     + S + +  + Y T ++ + A +  S
Sbjct: 61  LTVYMVYKEIKSGDLTWSSKVKISDYPYSLTKDYSASNVPMDAREY-TVKELVEASMIAS 119

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-------------- 185
           AN  + A  E + G+E KF  +M  + ++ G+ +    NASGL++K              
Sbjct: 120 ANSAAIALAEKVGGTEPKFVDMMKKQLQEWGITDAKLVNASGLNNKTLGDHIYPDSSSED 179

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIK 241
             + +ARD AI+   L K FPQ  K        +    +  +N +L  M      +DG+K
Sbjct: 180 ENMMSARDVAIVAHHLIKEFPQVLKITEKTNSDFSGNKMETYNYMLPNMPYAREGVDGLK 239

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           TG T  +G   V + +     +++VV+
Sbjct: 240 TGTTELAGACFVATSKENGMRLISVVL 266


>gi|305679771|ref|ZP_07402581.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
           matruchotii ATCC 14266]
 gi|305660391|gb|EFM49888.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
           matruchotii ATCC 14266]
          Length = 489

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 112/238 (47%), Gaps = 19/238 (7%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++   + G K    RY PAS+ K++   +  E + +  L LN  + VS  +A Q  
Sbjct: 170 LVWDLDSGAVLGTKDPHGRYRPASIIKVL---LAMEVINN--LDLNKVVTVSAESANQEG 224

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S + +     +T    +  L+ +S ND + A  + + G+E+     ++  A  +G  +T 
Sbjct: 225 SAVGIGPGGKYTIRDLLHGLLLQSGNDAAHALAQELGGNEQAL-TRVNALAHNLGATDTY 283

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY------RNRIITNHNK 229
             + SGL      T+ARD AI      KN P + +     ++++          I N N 
Sbjct: 284 AASYSGLDAPGMSTSARDMAIFYHYAWKN-PTFAQIVGTDEYKFPGYQDNPGWPIGNDNG 342

Query: 230 LLNKMHNIDGI--KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD-QKALELI 284
           LL  M++ DGI  KTG+T ++    V + +  +  I AV++     + R  Q+A +LI
Sbjct: 343 LL--MNDPDGIGGKTGFTSDANHTFVGAKKVGNRRIAAVILDTTVDKGRPWQQAQKLI 398


>gi|193212918|ref|YP_001998871.1| Serine-type D-ala-D-ala carboxypeptidase [Chlorobaculum parvum NCIB
           8327]
 gi|193086395|gb|ACF11671.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobaculum parvum NCIB
           8327]
          Length = 411

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 114/261 (43%), Gaps = 45/261 (17%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT  +  E   S +L     IP   T     P++   K          + A +
Sbjct: 75  PASLTKIMTCMLAIE---SGRLDDVVTIPPEATKV--EPTRAGFKPGDRIRLRDLVAAAM 129

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI----TTAR 192
             S+ND + A    + GS   F   M+ +A+ +GM +T + N +G +D+       +TAR
Sbjct: 130 VNSSNDAAFAIAIHLGGSLNGFVSKMNARARALGMTHTRFTNPAG-YDRGSYAGNHSTAR 188

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN------------HNKLLNKMHNIDGI 240
           D       L K      +Y    K    +R++ N            HNKLL++     GI
Sbjct: 189 D-------LMKLTEHAIRYSEFNKIAKLDRVVFNELNTGKRYSLRSHNKLLDRYPYSVGI 241

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE---------KK 291
           KTGYT  +G  ++     +   ++ +++   T +       EL +S  +         ++
Sbjct: 242 KTGYTSKAGPCLIARAVCEGKDMLVIMLHAKTDR------WELASSMFDQGFNLETTPRR 295

Query: 292 TLKHQQTHRKDNLSSTSLKKS 312
           TL+ ++T  ++ + +T +KKS
Sbjct: 296 TLRGKKTQIEE-IRATEIKKS 315


>gi|169351003|ref|ZP_02867941.1| hypothetical protein CLOSPI_01780 [Clostridium spiroforme DSM 1552]
 gi|169292065|gb|EDS74198.1| hypothetical protein CLOSPI_01780 [Clostridium spiroforme DSM 1552]
          Length = 342

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 106/241 (43%), Gaps = 11/241 (4%)

Query: 55  SSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S IV++  N+  + G  +D  +  AS++K+MT  +  E      + L+T I V  T    
Sbjct: 34  SYIVMEASNQVVIEGSNEDYIQSVASISKIMTCILAIE-----NMDLDTIITVDDTINKA 88

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S +Y+      +    +  L+ RS ND +    + ++    KF  +M++KA+++ + N
Sbjct: 89  WGSGIYIHIGDKISLRDLLYGLMLRSGNDAALMIAKAVAKDVPKFVDMMNDKARELELHN 148

Query: 174 TIYKNASGL--HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF--RYRNRIITNHNK 229
           T + N +GL   D    +T  D A L     +N P + +    +++     N    N NK
Sbjct: 149 TTFSNPTGLDEEDNGNQSTVYDMARLMAYCHQN-PIFNEIVKTKEYVREDGNGTWHNKNK 207

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           LL       G KTG+T+ +   ++T  R     ++ V        E  QK  E     LE
Sbjct: 208 LLTNYKYCIGGKTGFTKKARRTLITMARKNGLDLIIVTFNCGNDFEFHQKKYEECFDLLE 267

Query: 290 K 290
           +
Sbjct: 268 E 268


>gi|229072497|ref|ZP_04205699.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
 gi|228710473|gb|EEL62446.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
          Length = 273

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 81/145 (55%), Gaps = 8/145 (5%)

Query: 56  SIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQ 113
            + ID +  + + G ++DE  YPAS+ KMMT  ++ E ++      + +I V++ A  T+
Sbjct: 36  GVTIDADTGEILYGKREDERSYPASIAKMMTTLLLLENVKE-----DEEITVTENAIKTE 90

Query: 114 NPSK-LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           + SK + L+       ++ +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G +
Sbjct: 91  SQSKKIKLRAGEKLKRDEALKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTK 150

Query: 173 NTIYKNASGLHDKNQITTARDQAIL 197
           +  +KNASG        +  D AI+
Sbjct: 151 HATFKNASGADALGNKVSPYDIAII 175


>gi|167751174|ref|ZP_02423301.1| hypothetical protein EUBSIR_02160 [Eubacterium siraeum DSM 15702]
 gi|167655889|gb|EDS00019.1| hypothetical protein EUBSIR_02160 [Eubacterium siraeum DSM 15702]
          Length = 466

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 23/185 (12%)

Query: 30  LMGKILFLSIIMISMAS--------ELHAKPKYSSIVIDVNKNQMTG---FKQDEPR--Y 76
           L G +L  S+ + + A         + +    YS  V  VN +  TG   FK++E +  Y
Sbjct: 12  LCGAMLLCSLSVTAFAENDDEVYDFDPNTDKIYSEAVYMVNTD--TGDVVFKKNESKKMY 69

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVS------KTAATQNPSKLYLKE-KTYFTTE 129
           PAS TK+MT  I  E+L    L    ++P        +     +PS   ++  +   T +
Sbjct: 70  PASTTKIMTCIIALEHLSEGALSKKVEVPYDCFNDFYEDPNYSDPSNAAIEPLQDNLTYK 129

Query: 130 QGILALITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
             + AL+  SA + +      I G S  KF  +M+ KAK++G   T + NA GLH+ N  
Sbjct: 130 DCLYALMLPSACEAANILAYNIGGGSITKFIGMMNEKAKELGCTGTNFVNAHGLHNDNNY 189

Query: 189 TTARD 193
           TTA D
Sbjct: 190 TTAED 194


>gi|291556702|emb|CBL33819.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum V10Sc8a]
          Length = 466

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 23/185 (12%)

Query: 30  LMGKILFLSIIMISMAS--------ELHAKPKYSSIVIDVNKNQMTG---FKQDEPR--Y 76
           L G +L  S+ + + A         + +    YS  V  VN +  TG   FK++E +  Y
Sbjct: 12  LCGAMLLCSLSVTAFAENDDEVYDFDPNTDKIYSEAVYMVNTD--TGDVVFKKNESKKMY 69

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVS------KTAATQNPSKLYLKE-KTYFTTE 129
           PAS TK+MT  I  E+L    L    ++P        +     +PS   ++  +   T +
Sbjct: 70  PASTTKIMTCIIALEHLSEGALSKKVEVPYDCFNDFYEDPNYSDPSNAAIEPLQDNLTYK 129

Query: 130 QGILALITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
             + AL+  SA + +      I G S  KF  +M+ KAK++G   T + NA GLH+ N  
Sbjct: 130 DCLYALMLPSACEAANILAYNIGGGSITKFIGMMNEKAKELGCTGTNFVNAHGLHNDNNY 189

Query: 189 TTARD 193
           TTA D
Sbjct: 190 TTAED 194


>gi|229193289|ref|ZP_04320240.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
 gi|228590266|gb|EEK48134.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
          Length = 279

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 81/145 (55%), Gaps = 8/145 (5%)

Query: 56  SIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQ 113
            + ID +  ++  G ++DE  YPAS+ KMMT  ++ E ++      + +I V++ A  T+
Sbjct: 42  GVTIDADTGEILYGKREDERSYPASIAKMMTTLLLLENVKE-----DEEITVTENAIKTE 96

Query: 114 NPSK-LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           + SK + L+       ++ +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G +
Sbjct: 97  SQSKKIKLRAGEKLKRDEALKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTK 156

Query: 173 NTIYKNASGLHDKNQITTARDQAIL 197
           +  +KNASG        +  D AI+
Sbjct: 157 HATFKNASGADALGNKVSPYDIAII 181


>gi|302024467|ref|ZP_07249678.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis 05HAS68]
          Length = 402

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 110/226 (48%), Gaps = 29/226 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQI-----PVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           AS++K +++Y+++E L   ++ L+T +     P S T+ T+  S + L  ++Y   +   
Sbjct: 45  ASISKTLSIYLVYEALAKGEITLDTMVDISDYPYSLTSNTE-LSNVNLDARSYSVRDLLN 103

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN------ 186
            +LIT S+N    A  E I+GSE  F   M  K ++ G+ +T   N SGL + +      
Sbjct: 104 ASLIT-SSNSAIIALAEKIAGSEAAFVDRMKAKVQEWGITDTKIVNVSGLDNTDLGENIY 162

Query: 187 --------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMH-- 235
                    + +A D AI+   L  ++PQ     S+  + +      + N++L +  H  
Sbjct: 163 PGSSPEDVNMFSALDVAIIARRLILDYPQVLDITSLNAYDFGGYTYYSTNQMLSDGTHAR 222

Query: 236 -NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM----GMPTSQER 276
             +DG+KTG + ++G + + + +     I+ VV+    G+ + + R
Sbjct: 223 GGVDGLKTGTSNSAGSSFLATTQQAGMRIITVVLNANDGLTSPENR 268


>gi|291460023|ref|ZP_06599413.1| putative D-alanyl-D-alanine carboxypeptidase [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291417364|gb|EFE91083.1| putative D-alanyl-D-alanine carboxypeptidase [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 338

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 105/243 (43%), Gaps = 18/243 (7%)

Query: 56  SIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++V D+++ ++   K   E   PAS+TK+MTL +  E+L      L     +       +
Sbjct: 91  AVVYDLDRGRIIADKNSSEVINPASMTKVMTLLVCAEHLPDLDKRLTVTQDIVDYVHAHD 150

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S   L+     +    +  +I  S  D        I+GSE  F  LM+ KA+++G+ + 
Sbjct: 151 ASNCGLEAGEQISVRDLLYGVILPSGADAVMLLSREIAGSEAAFVGLMNQKARELGLSSG 210

Query: 175 I-YKNASGLHDKNQITTARDQA-ILGILLR----KNFPQYYKYFSIRKFRYRNRIITNHN 228
             + NA+GL+D N   T +D A IL   ++    +   + ++Y SI         I   N
Sbjct: 211 AHFSNATGLYDPNHHMTVKDTAEILNAAMKNPTARTVLESFEY-SIPATNKHAAGIRLSN 269

Query: 229 KLLNKMHNID-------GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER---DQ 278
             L ++   D         KTGY R S F  V+S   +      VV G  +S  +   DQ
Sbjct: 270 LFLKRIKGQDTGRVSVTAAKTGYVRQSMFCAVSSGVSESGKHYLVVSGFASSTWQCIADQ 329

Query: 279 KAL 281
            AL
Sbjct: 330 AAL 332


>gi|116514484|ref|YP_813390.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|116093799|gb|ABJ58952.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|325126190|gb|ADY85520.1| D-alanyl-d-alanine carboxypeptidase [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 428

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 115/253 (45%), Gaps = 31/253 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHL-NTQIPVSKTAA- 111
           ++I +D +  Q+   K    PR  AS+TK++T+Y+  + ++  KL   +T  P +  A  
Sbjct: 48  AAIAVDADSGQILYAKNATTPRQIASMTKLVTVYLTLQAIKQGKLSWTSTAKPTAAIAKI 107

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +QN   S + L     +T ++   A +  SAN  +    + +SG +  F   M       
Sbjct: 108 SQNTEYSNVPLTSGHAYTIKELYRATLIESANGAALTLAQAVSGDQVTFIKKMRKLLTSW 167

Query: 170 GMQNTIYKNASGLHD---------------KNQITTARDQAILGILLRKNFPQYYKYFSI 214
           G+++    NA GL +               +N+++ A D AI+   L K+FP+  +  SI
Sbjct: 168 GIKDAKIYNACGLANGSLGSAAYPGVGKDVENEMS-ATDMAIVCQKLLKDFPEVLQTTSI 226

Query: 215 RKFRYRNRI----ITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
               + +      +TN N +L  + +      +DG+KTG T  +G     +++     I+
Sbjct: 227 TSATFSSGSTQSQMTNWNWMLKGLSSYYSDLPVDGLKTGTTDKAGACFAGTVKKNGHRII 286

Query: 265 AVVMGMPTSQERD 277
            VV+G   +  +D
Sbjct: 287 TVVLGAKHANSQD 299


>gi|295110005|emb|CBL23958.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162]
          Length = 378

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 107/236 (45%), Gaps = 34/236 (14%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT--QNPSKLYLKEKTYFTTEQGIL 133
           YPAS+TK++T  + F     K  +++  + +S+   T  +    +  +E    T +Q + 
Sbjct: 153 YPASITKIITALLAF-----KNSNMDDVVTISQENITLEEGSQVVGFQEGDQVTMDQLVH 207

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  S ND ++A    + G+ + F  +M+  A ++G   T + N  GL D+N  TT  D
Sbjct: 208 CLLVYSGNDAASAIATHVGGTTENFVSMMNEYAAQLGCTGTHFTNPHGLQDENHYTTPYD 267

Query: 194 QAILGILLRK--NFPQ---------YYKYFSIRKFRYRNRIITNHNKLLNKMHNID---- 238
              + ++L++  N+P+         Y   F+       +  +T  +  L    N+     
Sbjct: 268 ---IYLMLKEALNYPEFTEITQMPSYTVTFTHSDGSEESVALTATDHYLTGEANVPKGVT 324

Query: 239 --GIKTGYTRNSGFNIVTSLRYKD--DPIVAVVMGMPTSQERDQKALELITSFLEK 290
             G KTG T NS  N +  L       P +++VMG  + +   Q+    +TS LEK
Sbjct: 325 VLGGKTG-TTNSAGNCLALLSQNSYGSPYISIVMGASSKELLYQQ----MTSLLEK 375


>gi|126652926|ref|ZP_01725068.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. B14905]
 gi|126590256|gb|EAZ84378.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. B14905]
          Length = 439

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 116/243 (47%), Gaps = 30/243 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----K 108
           ++I+ID +  ++  ++Q  D     AS+TKMMT Y++ + + +  +  + +  V+    +
Sbjct: 37  AAILIDADSGKIL-YEQNADTSLGIASMTKMMTEYLLLDAIDAGTVKWDQEYHVTDYTYR 95

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            +  +  S + L+    +T  +   A+   SAN  + A  E I+G+E +F  LM+ KA++
Sbjct: 96  MSQNRALSNVPLRRDGSYTIRELYEAMAIYSANAATVAIAETIAGTETEFLKLMNKKAEE 155

Query: 169 IGMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSI 214
           +G++   + N++GL++ +               +  A+  A L   L K+ P+  +   I
Sbjct: 156 LGLEGYKFVNSTGLNNADLFGMQPAGTGPEDENVMPAKYVAKLAYHLLKDHPKVLETSQI 215

Query: 215 RKFRYRNRI-----ITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            K  +R        ++N N +L  +      +DG+KTG T  +G     +       ++A
Sbjct: 216 TKKTFREGTEDAIEMSNWNFMLPGLVFEYQGVDGLKTGTTNFAGHCFTGTAERNGTRLIA 275

Query: 266 VVM 268
           VVM
Sbjct: 276 VVM 278


>gi|46203464|ref|ZP_00208979.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 215

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 1/106 (0%)

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRN 247
           + TARD ++L   L  +FP+YY  FS  +F +      N N LL      DG+KTG+T  
Sbjct: 1   MMTARDLSVLARHLIGDFPEYYPLFSQMEFVFNGIKQGNRNPLLYNTPGADGLKTGHTEA 60

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT-SFLEKKT 292
           +G+ +  S++  +  I+ V+ GM + +ER +++  L   +F E +T
Sbjct: 61  AGYGLTASIKRGNRRIIMVLNGMSSMKERAEESRRLTEWAFREWET 106


>gi|291546150|emb|CBL19258.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. SR1/5]
          Length = 388

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 8/135 (5%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPAS+TK+MT  +  +Y         +Q  V+  + +Q       +     T +Q +  L
Sbjct: 164 YPASITKIMTAMLALKYGNMDDTVTISQENVTLESGSQVAG---FQAGDQVTMDQLLHCL 220

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  SAND ++A  E I GS  KF  +M++ A ++G   T + N  GL D+N  TT  D  
Sbjct: 221 LVYSANDAASAIAEHIGGSTDKFVEMMNSFAAELGCTGTHFTNPHGLQDENHYTTPYD-- 278

Query: 196 ILGILLRK--NFPQY 208
            + ++L++  N+P++
Sbjct: 279 -IYLMLKEALNYPEF 292


>gi|313898282|ref|ZP_07831819.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. HGF2]
 gi|312956664|gb|EFR38295.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. HGF2]
          Length = 335

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 73/141 (51%), Gaps = 5/141 (3%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQS--KKLHLNTQIPVSKTAAT 112
           ++VID+   Q+   K  DE  +PASLTK++T  +  + +++  KK+ +  Q    +  A 
Sbjct: 72  AMVIDLQDQQVLYEKNSDERLFPASLTKVLTAIVALDNMENLHKKITITEQD--IEGLAE 129

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
            N S   L+     T E  + ALI  S  D + A    ++GS  KF   M+ KA  +GM 
Sbjct: 130 ANASVAGLEAGEQVTLEDLLYALILPSGADGANALANHLNGSISKFVKDMNEKANGMGML 189

Query: 173 NTIYKNASGLHDKNQITTARD 193
           +T + N +GL DK   TT +D
Sbjct: 190 HTHFTNTTGLQDKQHYTTLQD 210


>gi|257125213|ref|YP_003163327.1| serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia buccalis
           C-1013-b]
 gi|257049152|gb|ACV38336.1| Serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia buccalis
           C-1013-b]
          Length = 485

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 105/226 (46%), Gaps = 12/226 (5%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+M + +  + +      ++ ++  +        S L  K    +T +  + A I 
Sbjct: 160 ASLTKVMNILVALDQIDRGNAKIDDKVCFTPDTVNMGGSWLNAKAGDCYTLKDLLRAEII 219

Query: 138 RSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGL-----HDKNQITTA 191
            SAN+ +    + I  G+   F  LM+ KAK++GM +T Y   +GL     +     +TA
Sbjct: 220 YSANNAAYMVAKHIGKGNLDNFVKLMNQKAKELGMNDTHYYTPAGLPTSMTNKGMDTSTA 279

Query: 192 RDQAILG--ILLRKNFPQYYKY--FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRN 247
            D  +LG   +  +    + K     ++     + I  N N LLNK   I G+KTG+   
Sbjct: 280 YDMYLLGRRAIRDERLKAWMKESELVLQNSEGEDVIYNNRNHLLNKF-GIYGLKTGFHVQ 338

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
           +G+N++ S +  +  I++V +G  +   R +   +  T  LEK+ +
Sbjct: 339 AGYNMIVSSKIGNLEIISVTLGNKSDDARTKDQTQEFTQ-LEKRMI 383


>gi|322386843|ref|ZP_08060467.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus cristatus
           ATCC 51100]
 gi|321269125|gb|EFX52061.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus cristatus
           ATCC 51100]
          Length = 425

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 113/259 (43%), Gaps = 38/259 (14%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+ AK   S+I +D N  ++   K+   P    ++T ++T Y+++E + + KL L T++ 
Sbjct: 25  EIAAK---SAIAVDANSGKILYEKEATSPLEVGAITNILTAYLVYEAIANGKLSLETEVD 81

Query: 106 VSKTA--ATQNPSKLYLK-EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           +S  A   T NPS   L  E   +  +  + A +  SAN  + A  E + GSE+ F  +M
Sbjct: 82  ISDYAYQLTVNPSIANLPLEARRYKVKDLLNASLLASANSATIALAEKVGGSEENFVKMM 141

Query: 163 SNKAKKIGMQNTIYKNASG----LHDKNQITT-----------------------ARDQA 195
             K K+  + +    NA+G    L D +  TT                       A D A
Sbjct: 142 KAKLKEWNISDATIVNATGTDIRLLDGSLETTNTEEEAAENSKSKKKQETVNKFSAYDIA 201

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN----IDGIKTGYTRNSGFN 251
           ++   L  ++P+     S     +    + N N +L    +    + G+KTG +  SG +
Sbjct: 202 VIASHLIDDYPEVLGITSKSHVNFAGIQLENPNLMLEGSPSFRTGVKGLKTGGSEQSGVS 261

Query: 252 IVTSLRYKDDPIVAVVMGM 270
            V     K   ++ VV+G+
Sbjct: 262 FVGVTSEKGMRLITVVLGV 280


>gi|309776078|ref|ZP_07671069.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308916029|gb|EFP61778.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 305

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 97/202 (48%), Gaps = 23/202 (11%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVS---KTAATQNPSKLYL--KEKTYFTTEQG 131
           PASLTK+M++Y   +++++  L    Q+P S   K    Q     ++  +E TY   E  
Sbjct: 75  PASLTKLMSVYTALQHIEN--LQETVQVPASIFPKLEREQASMAGFIGNEEVTY---EDL 129

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           I   +  S  D        + GSE  F   M+ +A+++G++NT ++N +GL ++  +++ 
Sbjct: 130 IYGALLPSGADACMTLAITLYGSEDAFVAEMNVQAQRLGLKNTRFRNCTGLDEEGHVSSV 189

Query: 192 RDQAILGILLRKNFPQYYK-----YFSIRKFRYRNRIITNHNKLLNKMHN-------IDG 239
            D A L +      PQ+ +     Y+S+      +  +T ++ + + M         I G
Sbjct: 190 SDIATL-LKAAVQLPQFTEAFHAPYYSMAPSNKHSEGMTIYSTMRSTMDQHALSDTAILG 248

Query: 240 IKTGYTRNSGFNIVTSLRYKDD 261
            KTGYT+ +G  + +  +  ++
Sbjct: 249 GKTGYTKAAGLCLASQAKIGNE 270


>gi|256394922|ref|YP_003116486.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Catenulispora
           acidiphila DSM 44928]
 gi|256361148|gb|ACU74645.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Catenulispora
           acidiphila DSM 44928]
          Length = 311

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 21/213 (9%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIP--------VSKTAA--TQNPSKLYLKEKTYFT 127
           AS+TK+MT Y++   L+   L      P        V+ TA   +Q+ S + +    + T
Sbjct: 87  ASVTKVMTAYLV---LRDHPLRAGQDGPALTLTDADVADTAQRRSQDQSIVPVAAGEHLT 143

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
             Q + AL+  SAN+++     + +GS  +F   M+  A+ +GM++T Y + SG  D+  
Sbjct: 144 ERQALQALLLPSANNIAVVLARWDAGSVDQFVARMNATAQSLGMRDTRYTDPSGF-DEAT 202

Query: 188 ITTARDQAILGILLRK-NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           ++TA DQ  + I+ R    P +    ++            +   L       G+KTG   
Sbjct: 203 VSTAVDQ--VQIVARAMRLPVFADIVAMPSAALPVAGTVANTDTLVGHDGFVGVKTGSDD 260

Query: 247 NSG----FNIVTSLRYKDDPIVAVVMGMPTSQE 275
            +G    F  V ++  K   I  VV+G P + +
Sbjct: 261 AAGGCFAFQAVRTIGGKQTTITGVVLGQPGANQ 293


>gi|327462875|gb|EGF09197.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK1057]
          Length = 422

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 121/276 (43%), Gaps = 42/276 (15%)

Query: 33  KILFLSI-IMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQDE--PRYPASLTKMM 84
           K LFL + +++ M +   A   +     S++ +D    ++  +++D   P    S+T ++
Sbjct: 2   KRLFLCLLVLVGMTASKVAADDFNIAAKSAMAVDATSGKIL-YEKDANTPIEVGSITNLL 60

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFTTEQGILALITRSA 140
           T+Y+++E +    L  +T + +S  A   T NP  S + L+ K Y   +  I A +  S+
Sbjct: 61  TVYLVYEAIDRGDLTADTYVDISDYAYTLTSNPNISNVPLEAKRY-KAKDLIAASLMSSS 119

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------------- 183
           N  + A  E + GSE+ F  +M  K K+ G+++    N++GL+                 
Sbjct: 120 NSATIALAEKVGGSEENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYSASA 179

Query: 184 -------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN 236
                  D     +A D A++   L  +FPQ     S    +     + N+N +L    N
Sbjct: 180 STSKKSKDTENKFSAYDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSN 239

Query: 237 ----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
               +DG+K G +   G + V +       ++ VV+
Sbjct: 240 FRSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVL 275


>gi|153813456|ref|ZP_01966124.1| hypothetical protein RUMOBE_03876 [Ruminococcus obeum ATCC 29174]
 gi|149830477|gb|EDM85569.1| hypothetical protein RUMOBE_03876 [Ruminococcus obeum ATCC 29174]
          Length = 334

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 106/238 (44%), Gaps = 35/238 (14%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           K   ++ D+N         +E  YPAS+TK+MT  +  E L+     LN +I ++     
Sbjct: 86  KSGKVIGDING--------EEQMYPASMTKIMTTILAIENLKD----LNQEITITNDMV- 132

Query: 113 QNPSKLYLKE--KTYFTTEQGILAL------ITRSANDVSTAFGEFISGSEKKFAILMSN 164
              + LY+++  +  F   + + A+      +  S  +   A  + ++GS   F  LM+ 
Sbjct: 133 ---ADLYVQDAMQAGFQPNETVKAIDLLYGVMLPSGAECCVALADTVAGSVSDFVTLMNE 189

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYK--YFSIRKFRYR 220
           KA+K+GM  T + + SGLH ++  +TA+D A+L     KN  F +  +  Y S       
Sbjct: 190 KAEKLGMTGTHFSSISGLHREDHYSTAKDIALLLRYAIKNDTFREIIESPYHSTSGTNIH 249

Query: 221 NRIITNHNKLLNKMHN-------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
              IT ++ +   + +       I G KTGYT  +G  + +         + V  G P
Sbjct: 250 PDGITFYSTMFKNLSDTSVIDGEIKGGKTGYTSQAGHCLASFAEIDGVEYILVTAGAP 307


>gi|326942829|gb|AEA18725.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 280

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 92/178 (51%), Gaps = 15/178 (8%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    + ID    ++  G ++DE  YPAS+ 
Sbjct: 10  VMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDAKTGEILYGKREDERSYPASIA 69

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 70  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 124

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        +  D AI+
Sbjct: 125 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADAIGNKVSPYDIAII 182


>gi|225374872|ref|ZP_03752093.1| hypothetical protein ROSEINA2194_00495 [Roseburia inulinivorans DSM
           16841]
 gi|225213255|gb|EEG95609.1| hypothetical protein ROSEINA2194_00495 [Roseburia inulinivorans DSM
           16841]
          Length = 410

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 92/215 (42%), Gaps = 26/215 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK++T  I  E        L     VS  AA      L       F  +  I A++ 
Sbjct: 71  ASTTKILTCIIALE-----NCDLEQITEVSVQAAKAPKVHLGAPAGQKFRMKDLIYAMML 125

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI----TTARD 193
            S ND +    E ++G+ + F+ LM++ AKKIG ++T +   +GL  +  I    TTA D
Sbjct: 126 ESFNDCAVVIAEQVAGTTEHFSKLMNDYAKKIGCKDTFFITPNGLDAQKDIQFHHTTAED 185

Query: 194 QAILGILLRKNFPQYYKYFSI------------RKFRYRNRIITNHNKLLNKMHNIDGIK 241
            A +     K  P+  ++  I             K+ Y      NHN  L  M      K
Sbjct: 186 LAQIMRYCIKESPKADQFLKITGEAEYTFTDVSGKYAYH---CYNHNAFLKMMDGAVSGK 242

Query: 242 TGYTRNSGFNIVTSLRYKDDP-IVAVV-MGMPTSQ 274
           TG+T N+G+  V +L       IVA++  G P ++
Sbjct: 243 TGFTGNAGYCYVGALEQNGKTYIVALLACGWPNNR 277


>gi|116334395|ref|YP_795922.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367]
 gi|116099742|gb|ABJ64891.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367]
          Length = 307

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 98/209 (46%), Gaps = 30/209 (14%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV--------SKTAATQNPSKLYLKEK 123
           +  R  AS++K+MTLY+    +  K+ + N ++ +        S++AA     K  L  K
Sbjct: 62  NTARPIASVSKIMTLYLTLAKVNGKQSNWNHKVKITSRGLVSMSRSAAC-GGFKFKLGHK 120

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
             +T +Q   A    S+N+ + A G+++SGS  KF   M+ +AK   +    + +ASGL 
Sbjct: 121 --YTVKQLYDAAFLDSSNNAAIALGQWVSGSNAKFIKKMNAQAKAWKLGKAHFVSASGLE 178

Query: 184 DKN-------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           + +              + +A+D A++   L  ++P+          +   ++  N+N L
Sbjct: 179 NSDLQYYGYRYGTANANMVSAKDVALIARHLITDYPRVLTDGQAGSKKVDGQLCYNYNNL 238

Query: 231 LNKMH------NIDGIKTGYTRNSGFNIV 253
           L          N+DG+KTGYT  +G+  V
Sbjct: 239 LAGRKYYQASLNVDGLKTGYTPLAGYCFV 267


>gi|332365487|gb|EGJ43247.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK1059]
          Length = 422

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 120/277 (43%), Gaps = 41/277 (14%)

Query: 31  MGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQDE--PRYPASLTKM 83
           M ++    ++++ M +   A   +     S++ +D    ++  +++D   P    S+T +
Sbjct: 1   MKRLFLCLLVLVGMTASKVAADDFNIAAKSAMAVDATSGKIL-YEKDANTPIEVGSITNL 59

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFTTEQGILALITRS 139
           +T+Y+++E +    L  +T + +S  A   T NP  S + L+ K Y   +  I A +  S
Sbjct: 60  LTVYLVYEAIDRGDLTADTYVDISDYAYNLTSNPNISNVPLEAKRY-KVKDLIAASLMSS 118

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------------- 183
           +N  + A  E + GSE+ F  +M  K K+ G+++    N++GL+                
Sbjct: 119 SNSATIALAEKVGGSEENFVEMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYSAS 178

Query: 184 --------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
                   D     +A D A++   L  +FPQ     S    +     + N+N +L    
Sbjct: 179 ASTSKKSKDTENKFSAYDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQS 238

Query: 236 N----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N    +DG+K G +   G + V +       ++ VV+
Sbjct: 239 NFRSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVL 275


>gi|160938825|ref|ZP_02086176.1| hypothetical protein CLOBOL_03719 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437788|gb|EDP15548.1| hypothetical protein CLOBOL_03719 [Clostridium bolteae ATCC
           BAA-613]
          Length = 325

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 7/123 (5%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQNPSKLY-LKEKTYFTTEQ 130
           E  YPAS+TK+MT  +       K   LN ++ V+  A  T++ + L  ++     T EQ
Sbjct: 97  ERLYPASITKVMTALVAI-----KNGDLNARVVVTDDAVITESGATLCGIEPGDTLTLEQ 151

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  L+  S ND   A    I+GS  KFA +M+ +A  +G   T + N  GL+D +  TT
Sbjct: 152 LLYGLMLPSGNDAGAAIAVHIAGSIDKFADMMNQEAASLGATGTHFVNPHGLNDPDHYTT 211

Query: 191 ARD 193
           A D
Sbjct: 212 AYD 214


>gi|29830324|ref|NP_824958.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces avermitilis
           MA-4680]
 gi|29607435|dbj|BAC71493.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           avermitilis MA-4680]
          Length = 888

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 88/189 (46%), Gaps = 15/189 (7%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTE 129
           P+  AS+ K+MT Y+I E    K      +I V + A      ++ S   + +   FT  
Sbjct: 558 PKPIASVAKIMTAYVILEEHPLKGTAAGDKITVDQQAEDESKNEDESTAAMTKGQKFTER 617

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           Q +  L+  S N+ +     + S SE  F   M+  AKK+GM N+ Y + SGL  K  ++
Sbjct: 618 QMLQMLMIPSGNNAARLLARWDSDSET-FVGKMNAAAKKLGMTNSTYTDPSGLE-KTTVS 675

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RIITNHNKLLNKMHNIDGIKTGY 244
           TA DQ    + L K   Q   + SI      +       I N+N LL K   + G+KTG 
Sbjct: 676 TATDQ----LKLAKAVMQKEVFRSIVGMAKADIPGLKGTIYNNNDLLVKQVGVIGLKTGS 731

Query: 245 TRNSGFNIV 253
           +  +G N+V
Sbjct: 732 STPAGGNLV 740


>gi|325263916|ref|ZP_08130649.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
 gi|324030954|gb|EGB92236.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
          Length = 330

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 96/216 (44%), Gaps = 26/216 (12%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKE-KTYFTTEQGILA 134
           YPAS TK+MT Y+  +Y     + +      ++ AA +    L   +  T +    G   
Sbjct: 97  YPASTTKVMTAYVTLKYGNLDDI-VTVGPNATQFAADEQICGLQTGDTATLYDLLNG--- 152

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA--- 191
           L+  S ND + A  E ++GS + FA +M+ +A  +G  NT + N  GL D N  TTA   
Sbjct: 153 LVLYSGNDCAVAIAEHLAGSVEAFADMMNTEAAALGATNTHFVNPHGLQDDNHYTTAYDL 212

Query: 192 --------RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN----KLLNKMHNID- 238
                   +DQ  L I+ + +   Y    +      R+ +    N     L+     I+ 
Sbjct: 213 YLMFNACVKDQRFLDIISQDS---YTGTLTGADGTVRSEVWHPTNFYSQNLVPAPEGINV 269

Query: 239 -GIKTGYTRNSGFNIVT-SLRYKDDPIVAVVMGMPT 272
            G KTG T  +G  ++  S   + +P +++VMG  T
Sbjct: 270 FGGKTGTTDEAGSCVILYSQDPQANPYISIVMGAET 305


>gi|221635723|ref|YP_002523599.1| D,D carboxypeptidase [Thermomicrobium roseum DSM 5159]
 gi|221158037|gb|ACM07155.1| D,D carboxypeptidase [Thermomicrobium roseum DSM 5159]
          Length = 323

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 112/249 (44%), Gaps = 32/249 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S +V+D+  +++   +    P  PAS  K++T     E L  +++     +    T    
Sbjct: 71  SVLVVDLTTDRILLERASRTPLPPASTLKLLTALTAVEILSFEEI---VTVQPEDTVDPA 127

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAF----GEFISGSE-----KKFAILMSN 164
             S + L      T    +L L+  S ND + A     GE ++G       ++F + M  
Sbjct: 128 RESAMGLDVGDTITVHDLLLGLLLPSGNDAARALARSAGERLAGPPDRPPRERFLVAMQE 187

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYR-- 220
           KA+++G+  T+     G     Q T+ARD   L  L R     P+     ++R  + R  
Sbjct: 188 KARELGLSETVVLTPDGDDVPGQTTSARD---LLQLARATLDHPELAALVALRTAQVRVG 244

Query: 221 ---NRIIT--NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQ 274
               R++   N N+LL + H + GIKTG T  +G  +V + R  D    VA+V+G   SQ
Sbjct: 245 GPKARVLELRNTNELLGQ-HGVIGIKTGTTPEAGQCLVAAWRTSDGRTFVAIVLG---SQ 300

Query: 275 ER--DQKAL 281
           +R  D +A+
Sbjct: 301 DRYGDMRAI 309


>gi|332359810|gb|EGJ37624.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK1056]
          Length = 422

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 120/277 (43%), Gaps = 41/277 (14%)

Query: 31  MGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQDE--PRYPASLTKM 83
           M ++    ++++ M +   A   +     S++ +D    ++  +++D   P    S+T +
Sbjct: 1   MKRLFLCLLVLVGMTASKVAADDFNIAAKSAMAVDATSGKIL-YEKDANTPIEVGSITNL 59

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFTTEQGILALITRS 139
           +T+Y+++E +    L  +T + +S  A   T NP  S + L+ K Y   +  I A +  S
Sbjct: 60  LTVYLVYEAIDRGDLTADTYVDISDYAYNLTANPNISNVPLEAKRY-KVKDLIAASLMSS 118

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------------- 183
           +N  + A  E + GSE+ F  +M  K K+ G+++    N++GL+                
Sbjct: 119 SNSATIALAEKVGGSEENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYSAS 178

Query: 184 --------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
                   D     +A D A++   L  +FPQ     S    +     + N+N +L    
Sbjct: 179 ASTSKKSKDTENKFSAYDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQS 238

Query: 236 N----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N    +DG+K G +   G + V +       ++ VV+
Sbjct: 239 NFRSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVL 275


>gi|327488930|gb|EGF20727.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK1058]
          Length = 409

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 101/229 (44%), Gaps = 33/229 (14%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFTTE 129
           P    S+T ++T+Y+++E +    L  +T + +S  A   T NP  S + L+ K+Y   +
Sbjct: 37  PIEVGSITNLLTVYLVYEAIDRGDLTADTYVDISDYAYSLTSNPNISNVPLEAKSY-KVK 95

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH------ 183
             I A +  S+N  + A  E + GSE+ F  +M  K K+ G+++    N++GL+      
Sbjct: 96  DLIAASLMSSSNSATIALAEKVGGSEENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEY 155

Query: 184 ------------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
                             D     +A D A++   L  +FPQ  +  S    +     + 
Sbjct: 156 ATEETEYSASASTFKKSKDTENKFSAYDLAVISRHLIMDFPQVTEITSKSTAKIAGTSLE 215

Query: 226 NHNKLLNKMHN----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           N+N +L    N    +DG+K G +   G + V +       ++ VV+ +
Sbjct: 216 NYNFMLENQSNFRSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVLDV 264


>gi|325695651|gb|EGD37551.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK150]
          Length = 422

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 121/276 (43%), Gaps = 42/276 (15%)

Query: 33  KILFLSI-IMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQDE--PRYPASLTKMM 84
           K LFL + +++ M +   A   +     S++ +D    ++  +++D   P    S+T ++
Sbjct: 2   KRLFLCLLVLVGMTANKVAADDFNIAAKSAMAVDATSGKIL-YEKDANTPIEVGSITNLL 60

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFTTEQGILALITRSA 140
           T+Y+++E +    L  +T + +S  A   T NP  S + L+ K Y   +  I A +  S+
Sbjct: 61  TVYLVYEAIDRGDLTADTYVDISDYAYSLTSNPNISNVPLEAKRY-KVKDLIAASLMSSS 119

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------------- 183
           N  + A  E + GSE+ F  +M  K K+ G+++    N++GL+                 
Sbjct: 120 NSATIALAEKVGGSEENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYSASA 179

Query: 184 -------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN 236
                  D     +A D A++   L  +FPQ     S    +     + N+N +L    N
Sbjct: 180 STSKKSKDTENKFSAYDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSN 239

Query: 237 ----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
               +DG+K G +   G + V +       ++ VV+
Sbjct: 240 FRSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVL 275


>gi|150015827|ref|YP_001308081.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149902292|gb|ABR33125.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 440

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 10/148 (6%)

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           T++  +  L+  S ND +    + ISG  K FA LM+ KAK++G  N+ +   +GLHD N
Sbjct: 126 TSDDIMKGLLLFSGNDTAYVIADNISGDVKSFAELMNKKAKELGANNSNFVTPNGLHDPN 185

Query: 187 QITTARDQAILGILLRKNF--PQYYKYFSIRK----FRYRNRIITNHNKLLNKMHNIDGI 240
             TTA D   L I+++  F  P   +   + K     +    I+ N N  L K  N+ G 
Sbjct: 186 HYTTAYD---LSIIMKAAFANPWERETMELEKAPITLKNSRIILENRNLTLGKNGNLAG- 241

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KTG T  +G  + T        ++ +V+
Sbjct: 242 KTGTTNEAGGCLATVYDRDGRQLIGIVL 269


>gi|228942179|ref|ZP_04104719.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228975108|ref|ZP_04135667.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981748|ref|ZP_04142043.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
 gi|228777860|gb|EEM26132.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
 gi|228784629|gb|EEM32649.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817513|gb|EEM63598.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 301

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 92/178 (51%), Gaps = 15/178 (8%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    + ID    + + G ++DE  YPAS+ 
Sbjct: 31  VMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDAKTGEILYGKREDERSYPASIA 90

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 91  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 145

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        +  D AI+
Sbjct: 146 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADAIGNKVSPYDIAII 203


>gi|194336246|ref|YP_002018040.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308723|gb|ACF43423.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 390

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 18/202 (8%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK++T  +  E        L   + ++K +    PSK   K          + A +
Sbjct: 90  PASLTKILTCIMAIE-----SGRLEEDVLITKESTLVEPSKAGFKPGEKIRLIDLVKAAM 144

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG----LHDKNQITTAR 192
             S+ND + A    +SG  + F   M+ +A++IGM+N+ + N +G    L+  N  +TA 
Sbjct: 145 VNSSNDAAFAIAIHLSGDVESFVAAMNYRAQRIGMRNSRFTNPAGFDKALYAGNS-STAE 203

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRI------ITNHNKLLNKMHNIDGIKTGYTR 246
           D   L     KN P + +   + +  +  +       +  HNKLL+K     GIKTGYT 
Sbjct: 204 DLLHLTEYAVKN-PVFNQIARLEQVVFTEQTTRKVYSLKTHNKLLDKYPYAVGIKTGYTS 262

Query: 247 NSGFNIVTSLRYKDDPIVAVVM 268
            +G  ++     KD+  + +VM
Sbjct: 263 TAGRCLIARA-IKDNRDILLVM 283


>gi|327472301|gb|EGF17732.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK408]
          Length = 422

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 122/278 (43%), Gaps = 42/278 (15%)

Query: 33  KILFLSI-IMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQDE--PRYPASLTKMM 84
           K LFL + +++ M +   A   +     S++ +D    ++  +++D   P    S+T ++
Sbjct: 2   KRLFLCLLVLVGMTASKVAADDFNIAAKSAMAVDATSGKIL-YEKDANTPIEVGSITNLL 60

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFTTEQGILALITRSA 140
           T+Y+++E +    L  +T + +S  A   T NP  S + L+ K Y   +  I A +  S+
Sbjct: 61  TVYLVYEAIDRGDLTADTYVDISDYAYNLTSNPNISNVPLEAKRY-KVKDLIAASLMSSS 119

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------------- 183
           N  + A  E + GSE+ F  +M  K K+ G+ +    N++GL+                 
Sbjct: 120 NSATIALAEKVGGSEENFVQMMKAKIKEWGITDATIVNSTGLNTLLLEYATEETEYSASA 179

Query: 184 -------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN 236
                  D     +A D A++   L  +FPQ  +  S    +     + N+N +L    N
Sbjct: 180 STAKKSKDTENKFSAYDLAVISRHLIMDFPQVTEITSKSTAKIAGTSLENYNFMLENQPN 239

Query: 237 ----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
               +DG+K G +   G + V +       ++ VV+ +
Sbjct: 240 FRSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVLNV 277


>gi|295090867|emb|CBK76974.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cf.
           saccharolyticum K10]
          Length = 528

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 112/256 (43%), Gaps = 41/256 (16%)

Query: 50  AKPKYSS---------IVIDVNKNQM---TGFKQDEPRYPASLTKMMTLYIIFEYLQSKK 97
           A P++ S         IVID +   +    G     P  PAS+TK++T  ++ E      
Sbjct: 29  AAPEWPSDTGTMADIGIVIDADSGAVLFGQGIHNQSP--PASITKLLTALVVVE-----N 81

Query: 98  LHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             L+  +  S  A     + + +K  ++E    +    +  L+ +S+N  + A  E ++G
Sbjct: 82  SSLDDMVTFSHDAVYNVESGSGNKKNIEEGDVLSVRDCLYLLLLQSSNQAANALAEHVAG 141

Query: 154 SEKKFAILMSNKAKKIG-MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           S   F  +M+ K  ++G + +T + N SGL+D  Q  +A D A++      N  Q Y+  
Sbjct: 142 SRDAFVEMMNEKVSELGCVDDTHFANPSGLNDDTQHVSAYDMALIAKAAFDN-QQVYEIA 200

Query: 213 SIRKFRYRNRI-------ITNHNKLLNKMHNIDGI--------KTGYTRNSGFNIVTSLR 257
           S + ++    I        TN ++L+        +        KTGYT  +G  +VT   
Sbjct: 201 STKSYKLPATINNPNGVTCTNEHRLIITEDETSELYYPAAKAGKTGYTSLAGNTLVTCAE 260

Query: 258 YKDDPIVAVVM-GMPT 272
                +++V++ G P+
Sbjct: 261 EDGRCLISVILKGQPS 276


>gi|259502438|ref|ZP_05745340.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           antri DSM 16041]
 gi|259169581|gb|EEW54076.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           antri DSM 16041]
          Length = 412

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 108/244 (44%), Gaps = 30/244 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-- 111
           S+  ID    Q+   K  +  YP AS+TK++TL +I + +++ KL  + +I  S   A  
Sbjct: 40  SAYAIDAESGQVLYQKNAQKTYPVASVTKILTLAVIEQDIRAHKLSWDQKITASPAVAQM 99

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
             +P  S + L     +T +Q + +++  SA+  + A     +GS   F   M   A K 
Sbjct: 100 ANDPRCSNVQLNAGEKYTVKQLVESMMLVSADGSTEALALADAGSTAAFNQKMQAVAHKA 159

Query: 170 GMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+ +    N  GL               D   + +A+D A++   L + +P+  +  S +
Sbjct: 160 GVHDAKIYNMVGLPNSYMGAHALKGVDKDAENLFSAKDIALIAKYLVEEYPETLQITSTK 219

Query: 216 KFRYR-----NRIITNHNKLLN------KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
              ++        +TN N LL       K   IDG+KTG T  +G  IVT+  Y    ++
Sbjct: 220 FADFKVSADHKEHMTNINSLLPQNGAAPKDWQIDGLKTGNTDEAGKCIVTTGTYAGRRVI 279

Query: 265 AVVM 268
            V +
Sbjct: 280 VVAL 283


>gi|323350405|ref|ZP_08086068.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           VMC66]
 gi|322123342|gb|EFX95020.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           VMC66]
          Length = 422

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 120/277 (43%), Gaps = 41/277 (14%)

Query: 31  MGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQDE--PRYPASLTKM 83
           M ++    ++++ M +   A   +     S++ +D    ++  +++D   P    S+T +
Sbjct: 1   MKRLFLCLLVLVGMTASKVAADDFNIAAKSAMAVDATSGKIL-YEKDANTPIEVGSITNL 59

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFTTEQGILALITRS 139
           +T+Y+++E +    L  +T + +S  A   T NP  S + L+ K Y   +  I A +  S
Sbjct: 60  LTVYLVYEAIDRGNLTADTYVDISDYAYNLTSNPNISNVPLEAKRY-KVKDLIAASLMSS 118

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------------- 183
           +N  + A  E + GSE+ F  +M  K K+ G+ +    N++GL+                
Sbjct: 119 SNSATIALAEKVGGSEENFVQMMKAKLKEWGITDATIVNSTGLNTLLLEYATEETEYSAS 178

Query: 184 --------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
                   D     +A D A++   L  +FPQ  +  S    +     + N+N +L    
Sbjct: 179 ASTSKKSKDTENKFSAYDLAVISRHLIMDFPQVTEITSKSTAKIAGTSLENYNFMLENQS 238

Query: 236 N----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N    +DG+K G +   G + V +       ++ VV+
Sbjct: 239 NFRSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVL 275


>gi|293396038|ref|ZP_06640319.1| penicillin-binding protein 7 [Serratia odorifera DSM 4582]
 gi|291421536|gb|EFE94784.1| penicillin-binding protein 7 [Serratia odorifera DSM 4582]
          Length = 274

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 120/260 (46%), Gaps = 36/260 (13%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF--KQDEPRYP-ASLTKMMTLYIIFE 91
           LF  + +I  A     +  +S  V+ VN N       KQ   R P ASL+K+MT  ++ +
Sbjct: 17  LFSQLWLIGAAHASAPQALHSRAVLVVNANNGKTLYQKQANRRMPIASLSKLMTAMVVLD 76

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT----EQGILALITRSANDVSTAF 147
                K  +  ++ V  TAA ++  K      T  +T    +   +AL++ S N  + A 
Sbjct: 77  ----NKRPMGNRVKV--TAADRDLLKNTHSRLTVGSTLSRRDMLHIALMS-SENRAAAAL 129

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
             +  G  + F   M+ KA+ +GM +T + + +GL  +N ++TARD       L K    
Sbjct: 130 SRYYPGGRRAFVAKMNQKARALGMAHTRFYDPTGLTPRN-VSTARD-------LLKMVNN 181

Query: 208 YYKYFSIRKFRY---------RNRII-TNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSL 256
            Y+Y SIR F           R +++  + N L+N     I   KTG+T  +G  ++   
Sbjct: 182 AYRYQSIRHFSTDKQQIVRPGRGQLVYRSSNGLINNPSWKIQLQKTGFTNEAGHCLIMRT 241

Query: 257 RYKDDPIVAVVMGMPTSQER 276
             K  P++ +++G   SQ+R
Sbjct: 242 VIKGQPVIMILLG---SQQR 258


>gi|326565231|gb|EGE15416.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis 12P80B1]
          Length = 386

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 106/239 (44%), Gaps = 30/239 (12%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV-------SKTAATQNPSKLYL 120
           G   D  R  AS++K+MT  +I +     +L +  +I +       +K A+T+      L
Sbjct: 155 GKNADVQRSIASISKVMTAMVILD----AELDMREEITLIASDLIGAKQASTR------L 204

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           K     T  +  L ++ RS N  + A      G    F   M+ KA  +GM  T + ++S
Sbjct: 205 KAGDRMTRSEFTLMMLMRSENPAAKALARTYPGGYDAFIAAMNQKAYDLGMYQTKFSDSS 264

Query: 181 GLHDKNQITTARDQAILGILLR--------KNFPQYYKY-FSIRKFRYRNRII--TNHNK 229
           GL D + +++A D  I+   +         +NF     Y F I  +   +RI    N N+
Sbjct: 265 GL-DPHNMSSANDLLIMMKAVNSSPRYHSIRNFSTAPHYDFYIANYGSGDRIYKGNNTNR 323

Query: 230 LLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           L+ +     G+ KTGY R +G+++V      + P + V++G   S  R   A  ++T  
Sbjct: 324 LVREGAYPIGVQKTGYIREAGYSVVMETNINNRPAIVVLLGASNSANRWSDAETILTEL 382


>gi|326560224|gb|EGE10612.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis 7169]
 gi|326562868|gb|EGE13155.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis 46P47B1]
 gi|326570266|gb|EGE20311.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis BC8]
 gi|326571002|gb|EGE21026.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis BC7]
 gi|326576883|gb|EGE26789.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis O35E]
          Length = 386

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 106/239 (44%), Gaps = 30/239 (12%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV-------SKTAATQNPSKLYL 120
           G   D  R  AS++K+MT  +I +     +L +  +I +       +K A+T+      L
Sbjct: 155 GKNADVQRSIASISKVMTAMVILD----AELDMREEITLIASDLIGAKQASTR------L 204

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           K     T  +  L ++ RS N  + A      G    F   M+ KA  +GM  T + ++S
Sbjct: 205 KAGDRMTRSEFTLMMLMRSENPAAKALARTYPGGYDAFIAAMNQKAYDLGMYQTKFSDSS 264

Query: 181 GLHDKNQITTARDQAILGILLR--------KNFPQYYKY-FSIRKFRYRNRII--TNHNK 229
           GL  +N +++A D  I+   +         +NF     Y F I  +   +RI    N N+
Sbjct: 265 GLDPRN-MSSANDLLIMMKAVNSSPRYHSIRNFSTAPHYDFYIANYGSGDRIYKGNNTNR 323

Query: 230 LLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           L+ +     G+ KTGY R +G+++V      + P + V++G   S  R   A  ++T  
Sbjct: 324 LVREGAYPIGVQKTGYIREAGYSVVMETNINNRPAIVVLLGASNSANRWSDAETILTEL 382


>gi|324996133|gb|EGC28044.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK678]
          Length = 422

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 120/276 (43%), Gaps = 42/276 (15%)

Query: 33  KILFLSI-IMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQDE--PRYPASLTKMM 84
           K LFL + +++ M +   A   +     S++ +D    ++  +++D   P    S+T ++
Sbjct: 2   KRLFLCLLVLVGMTTSKVAADDFNIAAKSAMAVDATSGKIL-YEKDANTPIEVGSITNLL 60

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFTTEQGILALITRSA 140
           T+Y+++E +    L  +T + +S  A   T NP  S + L+ K Y   +  I A +  S+
Sbjct: 61  TVYLVYEAIDRGDLTADTYVDISDYAYNLTSNPNISNVPLEAKRY-KVKDLIAASLMSSS 119

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------------- 183
           N  + A  E + GSE+ F  +M  K K+ G+ +    N++GL+                 
Sbjct: 120 NSATIALAEKVGGSEENFVQMMKAKLKEWGITDATVVNSTGLNTLLLEYATEETEYSTSA 179

Query: 184 -------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN 236
                  D     +A D A++   L  +FPQ     S    +     + N+N +L    N
Sbjct: 180 STAKKSKDTENKFSAYDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSN 239

Query: 237 ----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
               +DG+K G +   G + V +       ++ VV+
Sbjct: 240 FRSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVL 275


>gi|326563690|gb|EGE13942.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis 103P14B1]
 gi|326566458|gb|EGE16608.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis BC1]
 gi|326573300|gb|EGE23268.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis 101P30B1]
 gi|326575803|gb|EGE25726.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis CO72]
          Length = 386

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 106/239 (44%), Gaps = 30/239 (12%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV-------SKTAATQNPSKLYL 120
           G   D  R  AS++K+MT  +I +     +L +  +I +       +K A+T+      L
Sbjct: 155 GKNADVQRSIASISKVMTAMVILD----AELDMREEITLIASDLIGAKQASTR------L 204

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           K     T  +  L ++ RS N  + A      G    F   M+ KA  +GM  T + ++S
Sbjct: 205 KAGDRMTRSEFTLMMLMRSENPAAKALARTYPGGYDAFIAAMNQKAYDLGMYQTKFSDSS 264

Query: 181 GLHDKNQITTARDQAILGILLR--------KNFPQYYKY-FSIRKFRYRNRII--TNHNK 229
           GL  +N +++A D  I+   +         +NF     Y F I  +   +RI    N N+
Sbjct: 265 GLDPRN-MSSANDLLIMMKAVNSSPRYHSIRNFSTAPHYDFYIANYGSGDRIYKGNNTNR 323

Query: 230 LLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           L+ +     G+ KTGY R +G+++V      + P + V++G   S  R   A  ++T  
Sbjct: 324 LVREGAYPIGVQKTGYIREAGYSVVMETNINNRPAIVVLLGASNSANRWSDAETILTEL 382


>gi|78044170|ref|YP_359992.1| D-alanyl-D-alanine carboxypeptidase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996285|gb|ABB15184.1| D-alanyl-D-alanine carboxypeptidase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 325

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 17/207 (8%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
           QD P  PAS TK+ T     +         N  + V   A     +K+YLK         
Sbjct: 44  QDFPLPPASTTKIATALTALDLYPR-----NFTLTVKPEAVRVTGTKIYLKPNEKIAVID 98

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  L+  S ND + A   ++ G E  F ++++   K++G+ +  +KN SGL       +
Sbjct: 99  LVYGLMLESGNDAANALA-WVVGKEN-FMLILNYYLKQMGLTSVSFKNPSGLSAPGHKIS 156

Query: 191 ARDQAILGI--LLRKNFPQYYKYFSIRKFR----YRNRIITNHNKLLNKMHNIDGIKTGY 244
           A+D  +L    LL+  F    K    +++     ++ R+  N N+LL     + G+KTG 
Sbjct: 157 AKDLCVLTFYALLKDEFADICK---TKQYEAQSGFKPRVFHNTNRLLAVDSRVIGVKTGT 213

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           T  +G  +V + R  +  ++  V+  P
Sbjct: 214 TNEAGKCLVGAWR-GNSFLIGTVLNCP 239


>gi|145487772|ref|XP_001429891.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124396985|emb|CAK62493.1| unnamed protein product [Paramecium tetraurelia]
          Length = 318

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 112/269 (41%), Gaps = 31/269 (11%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT Y   +     +    T I + + A     +  +L+     + E+ + AL+ 
Sbjct: 50  ASLTKIMTAYTAIQLSDIIQFQNETFIRIPRIATQIGGTSAFLRRDDTLSLEELLYALML 109

Query: 138 RSANDVSTA----FGEFISGSEK-------------------------KFAILMSNKAKK 168
            S ND + +    FG  ++   +                         +F   M+  A K
Sbjct: 110 PSGNDAAISIALHFGSILNTHRRQKIASYITCDTIQGFYDDTQMSNMNRFVRQMNENAMK 169

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           +GM+++ + N  GL  K   +TA D   +     K  P   +  + + +  RN    N N
Sbjct: 170 LGMRDSQFSNPHGLSSKANKSTALDMCRMSSAYMK-IPILKQICNSKSYSCRNYEWFNTN 228

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +LL+   N  GIKTG T N+G  +  S       I+ V++G    + R ++  +LI    
Sbjct: 229 QLLH-FENYSGIKTGITPNAGACLAVSYESLLGSIIVVLIGAKDQKRRFEETDKLINWVS 287

Query: 289 EKKTLKHQQTHRKDNLSSTSLKKSLMIKK 317
            + TL   +T      ++ S  +S +IKK
Sbjct: 288 REYTLYFNKTMYAPPRTAQSKGRSFIIKK 316


>gi|81427894|ref|YP_394893.1| D-alanyl-D-alanine carboxypeptidase precursor [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78609535|emb|CAI54581.1| D-alanyl-D-alanine carboxypeptidase precursor [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 428

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 109/245 (44%), Gaps = 32/245 (13%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLN-TQIP---VSKT 109
           ++I ID    Q+   K  +   P AS+TKM+T Y++ + ++  KL  N T  P   + K 
Sbjct: 36  AAIAIDPQSGQVLYEKNADQVLPIASMTKMITAYVVLDQIKQGKLKWNQTTKPDAAIYKL 95

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +  +  + + L+    ++  +   A++  SAND +      ++GS+K F  LM  +  + 
Sbjct: 96  SQDKELTNVPLQADKAYSVRELYQAMLIASANDAAMMLANLVAGSQKNFVDLMRQQVSQW 155

Query: 170 GMQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++    + SGL+              D     +A + AI+   L K FP+  +     
Sbjct: 156 GIKDAKLYSVSGLNNQYLTGETYPGSAADAENEMSASEVAIVAQHLLKTFPEVLETTKQT 215

Query: 216 KFRYRNRII-----TNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDP-I 263
            F +  + I        N +L   +N      +DG+KTG T  +G +  T    KD   I
Sbjct: 216 AFTFGPKTIDETKMATWNLMLPGQNNAPKDYVVDGLKTGTTDKAG-DCFTGTATKDGQRI 274

Query: 264 VAVVM 268
           + VVM
Sbjct: 275 LTVVM 279


>gi|312199939|ref|YP_004020000.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Frankia sp.
           EuI1c]
 gi|311231275|gb|ADP84130.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Frankia sp.
           EuI1c]
          Length = 437

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 17/197 (8%)

Query: 57  IVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D +  Q+   K  + R  PAS  K++T  ++   L   +     ++ V + A T + 
Sbjct: 82  LVADADTGQILAAKGADTRDLPASTMKILTALVVLPGLAPDR-----RVTVGRDAVTVDG 136

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           +K+ L     +       A++  S ND + A  + + G +   A  M+  A  +G  +T 
Sbjct: 137 TKVGLVPGQSYLVRDLATAMLIASGNDATVALVDAVGGRDAVVA-RMNALAASLGATDTH 195

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYRNR-----IITNHN 228
             + +GL    Q+++ RD AILG   R     P   +Y +I +            I NHN
Sbjct: 196 AVDPTGLDAPGQLSSVRDLAILG---RAAIAQPVISRYLTIPRAVLPTPNGGSFEIQNHN 252

Query: 229 KLLNKMHNIDGIKTGYT 245
            LL +     G+K GYT
Sbjct: 253 LLLGRYPGTLGVKNGYT 269


>gi|239942020|ref|ZP_04693957.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           roseosporus NRRL 15998]
          Length = 822

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 114/264 (43%), Gaps = 32/264 (12%)

Query: 47  ELHAKPKY----------------SSIVID-VNKNQMTGFKQDEPRYPASLTKMMTLYII 89
           EL AKP Y                S+++ID V      G ++  P   AS+ K+MT Y+I
Sbjct: 451 ELTAKPTYTFEGGGTELSWPGQGQSAVMIDGVGSLGSEGAQKPAPI--ASVAKVMTAYVI 508

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTEQGILALITRSANDVST 145
            +    K      +I V + A  +    + S   L +    T  Q +  L+  S N+ + 
Sbjct: 509 LQEHPLKGDEEGEKITVDQQAEDESKRPDESTAPLTKGQELTQRQLLQLLMIPSGNNAAR 568

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN- 204
               + +GSE  F   M++ AK+IGM  + Y + SGL  K  ++TA DQ  L   + +N 
Sbjct: 569 LLARWDAGSEDAFIDKMNDAAKEIGMTGSTYTDPSGLE-KTTVSTATDQLKLAQAVMRND 627

Query: 205 -FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP- 262
            F +      +       +I  N+N LL     + GIKTG +  +G N++ S   K D  
Sbjct: 628 VFREIVDMPEVEIEGIDGKIYNNNNLLL--QPGVSGIKTGSSTPAGGNLLWSANTKVDGK 685

Query: 263 ---IVAVVMGMPTSQERDQKALEL 283
              I   VMG      R   +LEL
Sbjct: 686 MLWIYGAVMGQQAGTGRVYDSLEL 709


>gi|291562538|emb|CBL41354.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
           SS3/4]
          Length = 528

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 22/179 (12%)

Query: 31  MGKILFLSIIMISMAS-ELHAKPKYSS---------IVIDVNKNQMTGFKQDE--PRYPA 78
           + K+L   ++   + + +  A+P + S          V+DV+   M  F Q+     YPA
Sbjct: 9   LAKVLCGVLVFTQLGTMQAFARPDWPSDTGIEAEAGAVMDVDTGTML-FGQNSHVEYYPA 67

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILA 134
           S+TK++T  ++ E+       L   +  S  A       + +KL L      T E  + A
Sbjct: 68  SITKILTALVVLEHAD-----LTDTVTYSDKAMNSVEVDSGNKLSLVAGDTMTVEDCLYA 122

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           L+  S N  + A  E ++GS   F  +M+ K  ++G   + + N SGL++ +Q+ TA D
Sbjct: 123 LLLASVNQAANALAEHVAGSIPDFVDMMNAKISELGCTESHFANPSGLNNDDQVVTAFD 181


>gi|104782270|ref|YP_608768.1| D-alanyl-D-alanine endopeptidase [Pseudomonas entomophila L48]
 gi|95111257|emb|CAK15977.1| D-alanyl-D-alanine endopeptidase; penicillin-binding proteins 7 and
           8 [Pseudomonas entomophila L48]
          Length = 308

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 109/226 (48%), Gaps = 21/226 (9%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+++ID+N NQ +     D  R  AS+TK+MT  ++ +     KL ++  +  S T A  
Sbjct: 45  SALLIDLNTNQELYSSHADRVRPIASVTKLMTAMVVLD----AKLPMDEML--SMTIA-N 97

Query: 114 NPSKLYLKEKTYFTTE----QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           NP    +  +    +E    + +L  +  S N  + +      G    F   M+ KA+ +
Sbjct: 98  NPEMKGVYSRVRLGSELNRRETLLITLMSSENRAANSLANHYPGGYGAFIKAMNAKARSL 157

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT 225
           GM +T Y   +GL   N ++TA+D A L +  RK +P   +  + R+    FR  N  + 
Sbjct: 158 GMSHTRYVEPTGLSTLN-VSTAQDLAKLLMASRK-YPMLSELSTTREKTVAFRKPNYTLG 215

Query: 226 --NHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             N + L+NK + +I   KTG+T  +G  +V   R  + P+  V++
Sbjct: 216 FRNTDHLVNKSNWDIKLTKTGFTNEAGHCLVLLTRMDNRPVAMVIL 261


>gi|289806354|ref|ZP_06536983.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 112

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 1/103 (0%)

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND   A  +F +GS+  F  LM++    +G++NT ++   GL    Q ++ARD A++
Sbjct: 10  QSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALI 69

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDG 239
           G  L ++ P  Y  +  ++F +      N N LL +   N+DG
Sbjct: 70  GQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDG 112


>gi|312862585|ref|ZP_07722826.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           vestibularis F0396]
 gi|311101845|gb|EFQ60047.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           vestibularis F0396]
          Length = 423

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 121/287 (42%), Gaps = 38/287 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGIL 133
            S+ K++T Y++++ +    L  N+++ +S    +   +   S + L  + Y T +Q + 
Sbjct: 65  GSIIKLLTAYMVYKAVDQGDLKWNSKVDISDYPFELTVSAGVSNIPLDARKY-TVKQLLD 123

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           A +  SAN  S A  E I G+E KF  +M  + K  G+ +    NASGL+          
Sbjct: 124 ATLIASANSASIALAEEIGGTESKFVDMMKAQLKDWGITDAKIVNASGLNNSYLGDNIYP 183

Query: 184 ----DKNQITTARDQAILGILLRKNFPQYYKYFSIRK-----FRYRNRIITNHNKLLNK- 233
               D+    +A+D A++   + K +P+      I K     F   N++ T++  L  + 
Sbjct: 184 GSKSDEENTMSAKDVAVIAQHVVKEYPE---ILDITKKTEADFDGVNKLKTSNYMLKGQP 240

Query: 234 --MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD-------QKALELI 284
                +DG+KTG T  +G + V         I+ V++    +   D          L  +
Sbjct: 241 SYRKGVDGLKTGTTDLAGASFVAHSNESGMSIITVILNSDNTDTDDYARFTATNDLLNYV 300

Query: 285 TSFLEKKTL-KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
               E KT+ K  Q   K   S    K   +    K  ++  +KIDA
Sbjct: 301 VYHWESKTIAKKGQAIGKSQASVLDGKSKQVTAVAKSDFNIIQKIDA 347


>gi|291531742|emb|CBK97327.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum 70/3]
          Length = 466

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 23/185 (12%)

Query: 30  LMGKILFLSIIMISMAS--------ELHAKPKYSSIVIDVNKNQMTG---FKQDEPR--Y 76
           L G +L  S+ + + A         + +    YS  V  VN +  TG   +K++E +  Y
Sbjct: 12  LCGAMLLCSLSVTAFAENDDEVYDFDPNTDKIYSEAVYMVNTD--TGDVVYKKNESKKMY 69

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVS------KTAATQNPSKLYLKE-KTYFTTE 129
           PAS TK+MT  I  E+L    L    ++P        +     +PS   ++  +   T +
Sbjct: 70  PASTTKIMTCIIALEHLSEASLSKKVEVPYDCFNDFYEDPNYSDPSNAAIEPLQDNLTYK 129

Query: 130 QGILALITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
             + AL+  SA + +      I G S  KF  +M+ KAK++G   T + NA GLH+ N  
Sbjct: 130 DCLYALMLPSACEAANILAYNIGGGSITKFIGMMNEKAKELGCTGTNFVNAHGLHNDNNY 189

Query: 189 TTARD 193
           TTA D
Sbjct: 190 TTAED 194


>gi|301629534|ref|XP_002943893.1| PREDICTED: d-alanyl-D-alanine endopeptidase-like [Xenopus
           (Silurana) tropicalis]
          Length = 356

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 101/212 (47%), Gaps = 27/212 (12%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT---AA 111
           ++VID N +++   K D+   P ASLTK+MT  +I E       HL+   P++ T     
Sbjct: 114 ALVIDQNTHEVLLSKNDKAVLPIASLTKLMTGLLISEA------HLSMDEPLTITQDDVD 167

Query: 112 TQNPSKLYLKEKTYFTTEQGI-LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           T+  S+  L   T  T  + + LAL++ S N  + A G    G    F   M+ KA+++G
Sbjct: 168 TEKGSRSRLSVGTTLTRGEMLHLALMS-SENRAAHALGRTYPGGLGAFVARMNAKARQLG 226

Query: 171 MQNTIYKNASGLHDKNQITTARDQAIL------GILLRK--NFPQYYKYFSIRKFRYRNR 222
           M +T Y   +GL   NQ ++ARD A L        LLR+    P Y      R  ++   
Sbjct: 227 MTDTRYVEPTGLSSHNQ-SSARDLATLVNVAHGDPLLRELSTSPGYEVAVGRRTLQF--- 282

Query: 223 IITNHNKLL-NKMHNIDGIKTGYTRNSGFNIV 253
              N N+L+ +   +I   KTGY   +G  +V
Sbjct: 283 --NNTNRLVSSPAWDIGLQKTGYIAEAGRCLV 312


>gi|291445469|ref|ZP_06584859.1| predicted protein [Streptomyces roseosporus NRRL 15998]
 gi|291348416|gb|EFE75320.1| predicted protein [Streptomyces roseosporus NRRL 15998]
          Length = 838

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 114/264 (43%), Gaps = 32/264 (12%)

Query: 47  ELHAKPKY----------------SSIVID-VNKNQMTGFKQDEPRYPASLTKMMTLYII 89
           EL AKP Y                S+++ID V      G ++  P   AS+ K+MT Y+I
Sbjct: 467 ELTAKPTYTFEGGGTELSWPGQGQSAVMIDGVGSLGSEGAQKPAPI--ASVAKVMTAYVI 524

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTEQGILALITRSANDVST 145
            +    K      +I V + A  +    + S   L +    T  Q +  L+  S N+ + 
Sbjct: 525 LQEHPLKGDEEGEKITVDQQAEDESKRPDESTAPLTKGQELTQRQLLQLLMIPSGNNAAR 584

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN- 204
               + +GSE  F   M++ AK+IGM  + Y + SGL  K  ++TA DQ  L   + +N 
Sbjct: 585 LLARWDAGSEDAFIDKMNDAAKEIGMTGSTYTDPSGLE-KTTVSTATDQLKLAQAVMRND 643

Query: 205 -FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP- 262
            F +      +       +I  N+N LL     + GIKTG +  +G N++ S   K D  
Sbjct: 644 VFREIVDMPEVEIEGIDGKIYNNNNLLL--QPGVSGIKTGSSTPAGGNLLWSANTKVDGK 701

Query: 263 ---IVAVVMGMPTSQERDQKALEL 283
              I   VMG      R   +LEL
Sbjct: 702 MLWIYGAVMGQQAGTGRVYDSLEL 725


>gi|312873554|ref|ZP_07733601.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF
           2052A-d]
 gi|311090807|gb|EFQ49204.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF
           2052A-d]
          Length = 385

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 108/244 (44%), Gaps = 29/244 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK--TAA 111
           ++I+ D+   Q+   K    + P AS++K++T+Y+  + +++ KL   T++  S+   A 
Sbjct: 24  AAIIYDLKSGQIMYAKNITQKLPVASMSKLLTIYLTLKAIKAGKLSWQTKVMPSREAIAV 83

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           ++NP  S + L+    +T  Q   A + +SAN  +      ++GS KKF  +M  +    
Sbjct: 84  SKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRKQLLDW 143

Query: 170 GMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
            +        SGL               D     +A D  IL   L   FPQ      I 
Sbjct: 144 HISQAQIVTPSGLPNFTLGRDADSTKNADAENELSASDMGILIKHLLLEFPQVLDTTRIS 203

Query: 216 KFRYRNR----IITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           K  + +      + N N +L      N+ + +DG+KTG T  +G  + ++L      IV 
Sbjct: 204 KLNFPDGHNTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGACLASTLVKNGRRIVT 263

Query: 266 VVMG 269
           V++G
Sbjct: 264 VIIG 267


>gi|229829069|ref|ZP_04455138.1| hypothetical protein GCWU000342_01154 [Shuttleworthia satelles DSM
           14600]
 gi|229792232|gb|EEP28346.1| hypothetical protein GCWU000342_01154 [Shuttleworthia satelles DSM
           14600]
          Length = 334

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 8/142 (5%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S++VI+     +   KQ +   YPAS+TK++T        Q     L+  + VS+ A   
Sbjct: 85  SALVINETSGHVLYSKQANRKAYPASMTKVLTFLTAMRCGQ-----LSDTLTVSENALRV 139

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            +  +   L+     + ++ + A+I  S ND +    E + GS + FA  M+  A  IG 
Sbjct: 140 MEGSTMAGLRAGDQISLQEALYAMILPSGNDAAITIAEGLGGSTEHFAEEMNETAASIGA 199

Query: 172 QNTIYKNASGLHDKNQITTARD 193
            +T Y   +GLHD N  TTA D
Sbjct: 200 THTHYVTVNGLHDDNHYTTAND 221


>gi|296390777|ref|ZP_06880252.1| D-alanyl-D-alanine endopeptidase [Pseudomonas aeruginosa PAb1]
          Length = 310

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 122/265 (46%), Gaps = 31/265 (11%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKY-------------SSIVIDVNKNQMTGFKQD 72
           RN  L    LFLS+   S+A+ + A P               S++V D N  ++   +  
Sbjct: 2   RNRLLSLVTLFLSL---SVATAVSASPPPKAGLPLQQELASGSALVTDQNTGKVLYSRNP 58

Query: 73  EPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-LKEKTYFTTEQ 130
           +   P AS+TK+MT  ++ +     KL L+  +P++ +  ++       ++  +  +   
Sbjct: 59  DLVVPIASITKLMTAMVVLD----SKLPLDEVLPIAISETSEMRGVFSRVRVGSQISRRD 114

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +L  +  S N  + +  +   G +  F   M+ KA  +GM+NT Y   +GL   N ++T
Sbjct: 115 MLLLALMSSENRAAASLAQNYPGGKNAFVKAMNAKAHALGMKNTRYVEPTGLSLHN-VST 173

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT--NHNKLL-NKMHNIDGIKTG 243
           ARD   L ++  + +P   ++ +  +    FR+ N  +   N N L+ NK  NI   KTG
Sbjct: 174 ARDLTRL-LVASRQYPLLSQWSTTPEKTVAFRHPNYTLGFRNTNHLINNKTWNIQLTKTG 232

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVM 268
           +T  +G  +V       +P+  VV+
Sbjct: 233 FTNEAGHCLVMRTTINRNPVNLVVL 257


>gi|302670839|ref|YP_003830799.1| D-alanyl-D-alanine carboxypeptidase DacA2 [Butyrivibrio
           proteoclasticus B316]
 gi|302395312|gb|ADL34217.1| D-alanyl-D-alanine carboxypeptidase DacA2 [Butyrivibrio
           proteoclasticus B316]
          Length = 329

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 104/228 (45%), Gaps = 32/228 (14%)

Query: 64  NQMTGFKQD--EPRYPASLTKMMTLYIIFEYLQSKK-LHLNTQIPVSKTAATQNPSKLYL 120
           N+ T F Q+  +   PASLTK+MT Y+  +Y   ++ L   + + V+++ A     K+ L
Sbjct: 90  NRETLFAQNVNDRVMPASLTKVMTAYVALKYGSLEQVLVAGSDVYVNESGA----QKIGL 145

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           KE    T +Q +  L+  SANDV+      ISGS ++F   M+ +A  IG   T ++N +
Sbjct: 146 KEGDRMTLDQALHILLIYSANDVANLIASNISGSIEEFVNTMNAEAYAIGATKTHFENPN 205

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFS--IRKFRY-----------RNRIITNH 227
           GL       TA D     + L  N    Y  FS  I    Y           ++  I+N 
Sbjct: 206 GLTSDEHYVTAYD-----MYLIFNAAMQYDTFSEIINMNSYTTSYIDATGASKDVDISNT 260

Query: 228 NKLLNKMH------NIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVM 268
           N  L           + G KTG T+ +G  ++   R    +P +AV+M
Sbjct: 261 NGFLTGAKPVPSGVTVIGGKTGTTQAAGHCLILLARDTAGNPYIAVIM 308


>gi|224475783|ref|YP_002633389.1| penicillin binding protein 4 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420390|emb|CAL27204.1| penicillin binding protein 4 [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 429

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 86/159 (54%), Gaps = 22/159 (13%)

Query: 69  FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKE 122
           +  D+  YPAS+TK+MT+Y+  E +++ KL LN ++ +++      T    + +KLY  E
Sbjct: 64  YHMDKKWYPASMTKLMTMYLTLEAVKAHKLSLNDKVKITEDDYRMSTLPKLSNTKLYPGE 123

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG- 181
              +T ++ +   ++ S+N  +    + +SG+   F   M+ KAK++GM  T Y N +G 
Sbjct: 124 T--YTIKELLQITVSASSNAAALILAKKVSGNTSDFTDKMNKKAKELGMTKTHYVNPTGA 181

Query: 182 ----LHD------KNQIT---TARDQAILGILLRKNFPQ 207
               L D      KN+++   +A+D AIL   + ++ P+
Sbjct: 182 ENNLLQDFAPKKYKNEMSSRASAKDYAILSQRVIQDTPK 220


>gi|269122254|ref|YP_003310431.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sebaldella
           termitidis ATCC 33386]
 gi|268616132|gb|ACZ10500.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sebaldella
           termitidis ATCC 33386]
          Length = 496

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 13/210 (6%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASL K+M + +  + +      L+ ++   +  A    S L +K    F     + A   
Sbjct: 175 ASLAKVMNILVALDQVDKGNKSLDDKVCFDQATANVGGSWLNVKAGECFVLRDLLRAENI 234

Query: 138 RSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGL-----HDKNQITTA 191
            SAN+ +    + I  GS  KF  LM+ KAK++GM+NT +   +GL       +   +TA
Sbjct: 235 YSANNAAYLVAKHIGNGSIDKFVELMNEKAKELGMKNTKFYTPAGLPTSMTGRQLDTSTA 294

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----IITNHNKLLNKMHNIDGIKTGYTR 246
            D  +L +   K+  +  ++   ++    N      I  + N LL K   I G+KTG+  
Sbjct: 295 DDLYLLAMAAMKD-KRIREWAGEKELILENSLGEQIIYPSRNHLLEKF-GIWGLKTGFHN 352

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
            SG+NI+ + +  +  IVAVV+G  T   R
Sbjct: 353 LSGYNIIVTSKKGNVEIVAVVLGEVTDAAR 382


>gi|108805102|ref|YP_645039.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rubrobacter xylanophilus
           DSM 9941]
 gi|108766345|gb|ABG05227.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rubrobacter xylanophilus
           DSM 9941]
          Length = 384

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 21/206 (10%)

Query: 75  RYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK---TAATQNPSKLYLKEKTYFTTEQ 130
           R P AS TK+M   +       ++  L+ ++ VS      A    S + L+     +  +
Sbjct: 59  RLPMASTTKIMLAIVAL-----REGGLDREVAVSPRAAAYAAPPYSNVGLRAGDVLSLRE 113

Query: 131 GILALITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
            ++A +  S +D + A  E + G S ++    M+ +A+++G+++T ++N  GL  +   +
Sbjct: 114 LLMASLISSGDDAAYALAEALGGGSVERLVEKMNREARRLGLEDTHFQNPVGLDGRRHRS 173

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRY-------RNRIITNHNKLLNKMHNIDGIKT 242
           +ARD     + + +   QY  +  I   RY       R   +TN N+LL       GIKT
Sbjct: 174 SARDL----VRMSREAMQYPLFREIVATRYAVISTPDREIPLTNTNELLFTYPPATGIKT 229

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVM 268
           G T  +G  +V S    D+  VAVV+
Sbjct: 230 GTTPAAGPCLVASAASGDESYVAVVL 255


>gi|320010214|gb|ADW05064.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           flavogriseus ATCC 33331]
          Length = 893

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 96/209 (45%), Gaps = 25/209 (11%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTEQGIL 133
           AS+ K+MT Y+I +           QI V   A  +    + S   +KE   +T  Q + 
Sbjct: 569 ASVAKIMTAYVILQGHPITGKEDGEQIEVDAKAGEEANRPDESTAPIKEGQKYTQRQMLQ 628

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  S N+V+     + + +EK F   M+  AK +GM N++Y + SGL    + T A D
Sbjct: 629 LLMIPSGNNVARLLARWDATTEKAFVEKMNAAAKDLGMTNSVYTDPSGLESTTRSTPA-D 687

Query: 194 Q-----AIL-GILLRK--NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
           Q     A++   + R+  N PQ  +   I K  Y      N+N LL     + GIKTG +
Sbjct: 688 QLKLAKAVMQNDVFREIVNMPQ-AEIPGIGKMIYN-----NNNILLEP--GVSGIKTGSS 739

Query: 246 RNSGFNIV----TSLRYKDDPIVAVVMGM 270
             +G N+V    T +  K   I+  VMG 
Sbjct: 740 TPAGGNLVWTADTVIDGKSRRIIGAVMGA 768


>gi|315651403|ref|ZP_07904428.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saburreum DSM
           3986]
 gi|315486362|gb|EFU76719.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saburreum DSM
           3986]
          Length = 326

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 3/118 (2%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPAS TK+MT  +  +Y     L     +P          S   +      T ++ +  L
Sbjct: 102 YPASTTKVMTALLALKY---SNLSDEVVVPDESVIDEAGASLAGIHPGDKLTLDELLYGL 158

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           +  S ND + A    I GS + F  +M+ +AK+IG  +T + NA+GL D N  TTA D
Sbjct: 159 MLPSGNDAANAIAVHIGGSVESFVKMMNEEAKRIGAVDTNFVNANGLSDDNHYTTAYD 216


>gi|259501428|ref|ZP_05744330.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus iners DSM
           13335]
 gi|259167177|gb|EEW51672.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus iners DSM
           13335]
          Length = 429

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 114/244 (46%), Gaps = 29/244 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK--TAA 111
           ++I+ D+   Q+   K  + + P AS++K++T+Y+  + + + K+   T++  S+   A 
Sbjct: 68  AAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAINAGKISWQTKVMPSREAIAV 127

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           ++NP  S + L+    +T  Q   A + +SAN  +      ++GS KKF  +M  +    
Sbjct: 128 SKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRKQLLDW 187

Query: 170 GMQNTIYKNASGL--------HDKNQITTARDQ---AILGILLRK---NFPQYYKYFSIR 215
            +        SGL         D N+   A ++   + +GIL++     FPQ      I 
Sbjct: 188 HISQAQIVTPSGLPNFTLGRDADSNKNADAENELSASDMGILIKHLLLEFPQVLDTTRIS 247

Query: 216 KFRYRNR----IITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           K  + +      + N N +L      N+ + +DG+KTG T  +G  + ++L      IV 
Sbjct: 248 KLNFPDGHNTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGACLASTLVKNGRRIVT 307

Query: 266 VVMG 269
           V++G
Sbjct: 308 VIIG 311


>gi|302335720|ref|YP_003800927.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Olsenella uli
           DSM 7084]
 gi|301319560|gb|ADK68047.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Olsenella uli
           DSM 7084]
          Length = 383

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           ++  S ND +      ++G+E+ F  LM+ KA++IGM++T + N  GL + +  + A D 
Sbjct: 115 MLVYSGNDAALNVAYAVAGTEEAFVELMNKKAREIGMEDTHFSNPHGLEEDDHYSCAHDL 174

Query: 195 AILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           A++G    +N+P   +    R+       + +   + ++L++    + GIKTG    +G 
Sbjct: 175 ALMGKYALENYPFIARTVMTRRLTVTVGGQQKTFESTDELMDSYGGLCGIKTGKVE-AGT 233

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQER 276
             + S +     + + V+G  T   R
Sbjct: 234 TFLGSSKRHGLQLFSCVLGCTTDDGR 259


>gi|262379926|ref|ZP_06073081.1| D-alanyl-D-alanine endopeptidase [Acinetobacter radioresistens
           SH164]
 gi|262298120|gb|EEY86034.1| D-alanyl-D-alanine endopeptidase [Acinetobacter radioresistens
           SH164]
          Length = 352

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 29/246 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI---PVSKTA 110
           +++V+D    ++   K      P AS+TK+MT  +  +     +L+++ +I   P+    
Sbjct: 112 AALVMDAQTGEVLFSKNTNTALPIASITKLMTAVVTSD----ARLNMSEEITLQPIDFIG 167

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             +  S L   +K      + +L  + +S N  + A      G +  F   M+ KA+++G
Sbjct: 168 PKKASSTLRAGDK--MNRAEVLLFALMKSENPAAAALARTYPGGKPAFVAAMNAKARELG 225

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR----------YR 220
           M +  +  ++GL  +N + +ARD   LGIL+        +Y  IR+F           YR
Sbjct: 226 MHSAKFYESTGLDARN-VASARD---LGILVSA----ASQYGLIRQFSTTPTYDFNLGYR 277

Query: 221 NRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
                N N L+ N   NI+  KTG+   +G  +V        P + V++G   +Q R+  
Sbjct: 278 VLKSNNTNALVRNGGWNINLSKTGFINEAGRCVVMHATVNQRPAIVVLLGASDTQSRNND 337

Query: 280 ALELIT 285
           A  L +
Sbjct: 338 ATRLFS 343


>gi|260587841|ref|ZP_05853754.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
           20583]
 gi|331083843|ref|ZP_08332952.1| hypothetical protein HMPREF0992_01876 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542106|gb|EEX22675.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
           20583]
 gi|330403268|gb|EGG82828.1| hypothetical protein HMPREF0992_01876 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 411

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 104/243 (42%), Gaps = 41/243 (16%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+ +ID    ++   K  E + P AS TK+MT  +    L+S  L    +I  +   A +
Sbjct: 41  SAALIDGESGRVLYEKNGEEKRPMASTTKIMTCILT---LESGCLE---EIAEASEKAAR 94

Query: 114 NP---------SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
            P          K Y+K+  Y        +L+  S ND +    E + GS + FA  M+ 
Sbjct: 95  MPKVHLGASVGEKFYVKDLLY--------SLMLESHNDSAVILAEHVGGSVEGFAEKMNE 146

Query: 165 KAKKIGMQNTIYKNASGLHDKNQ--------ITTARDQAIL---GILLRKNFPQYYKYFS 213
           KA++IG ++T +   +GL  K +         TTA + A +    + L     ++ K   
Sbjct: 147 KAREIGCEDTWFITPNGLDAKEEREGEEKVHETTAENLAQIMRYCVCLSPAREEFLKITQ 206

Query: 214 IRKFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
              +R+      R     NHN  L+ M      KTG+T  +G+  V +L+     ++  +
Sbjct: 207 TPSYRFSDADGKREFSCQNHNAFLSMMEGAISGKTGFTAQAGYCYVGALQRDGKTLIVAL 266

Query: 268 MGM 270
           +G 
Sbjct: 267 LGC 269


>gi|329919680|ref|ZP_08276658.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners SPIN
           1401G]
 gi|328937332|gb|EGG33756.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners SPIN
           1401G]
          Length = 423

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 114/244 (46%), Gaps = 29/244 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK--TAA 111
           ++I+ D+   Q+   K  + + P AS++K++T+Y+  + + + K+   T++  S+   A 
Sbjct: 62  AAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAINAGKISWQTKVMPSREAIAV 121

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           ++NP  S + L+    +T  Q   A + +SAN  +      ++GS KKF  +M  +    
Sbjct: 122 SKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRKQLLDW 181

Query: 170 GMQNTIYKNASGL--------HDKNQITTARDQ---AILGILLRK---NFPQYYKYFSIR 215
            +        SGL         D N+   A ++   + +GIL++     FPQ      I 
Sbjct: 182 HISQAQIVTPSGLPNFTLGRDADSNKNADAENELSASDMGILIKHLLLEFPQVLDTTRIS 241

Query: 216 KFRYRNR----IITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           K  + +      + N N +L      N+ + +DG+KTG T  +G  + ++L      IV 
Sbjct: 242 KLNFPDGHNTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGACLASTLVKNGRRIVT 301

Query: 266 VVMG 269
           V++G
Sbjct: 302 VIIG 305


>gi|293400361|ref|ZP_06644507.1| putative D-alanyl-D-alanine carboxypeptidase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291306761|gb|EFE48004.1| putative D-alanyl-D-alanine carboxypeptidase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 416

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 98/220 (44%), Gaps = 18/220 (8%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK---LYLKEKTYFTTEQGI 132
           YPAS+TK+MT  ++ E   +K      +   S T   ++ +    L + E+     +  +
Sbjct: 61  YPASMTKIMTAIVVIE--NTKHFDKIVEAVPSDTKVIRDEASIAGLLIGER--MRIQDAL 116

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             ++  S +D +     + +G+ K F  LM+NKAK++ +Q+T + N  G +DK   TT +
Sbjct: 117 SCMMLASGSDAAKMLARYTTGNTKDFVDLMNNKAKELHLQDTHFTNVYGKYDKQHYTTVK 176

Query: 193 DQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITN-----HNKLLNKMHNIDGIKT 242
           D A+L     +N P + K  +     I+   +  RI  N      +K       I G K+
Sbjct: 177 DMALLMDYAMEN-PIFQKIVASDQVKIKTNAFEERIAENFVYATFDKAKLDHSYITGAKS 235

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           G    +G N+ ++       +V V    P  ++     ++
Sbjct: 236 GSMDETGLNLASTAEKDGRRVVIVSAEAPIDEKHTNHVVD 275


>gi|313105750|ref|ZP_07792013.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa 39016]
 gi|310878515|gb|EFQ37109.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa 39016]
          Length = 310

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 121/265 (45%), Gaps = 31/265 (11%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKY-------------SSIVIDVNKNQMTGFKQD 72
           RN  L    LFLS+   S+A+ + A P               S++V D N  ++   +  
Sbjct: 2   RNRLLSLVTLFLSL---SVATAVSASPPPKAGLPLQQELASGSALVTDQNTGKVLYSRNP 58

Query: 73  EPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-LKEKTYFTTEQ 130
           +   P AS+TK+MT  ++ +     KL L+  +P++ +  ++       ++  +  +   
Sbjct: 59  DLVVPIASITKLMTAMVVLD----SKLPLDEVLPIAISETSEMRGVFSRVRVGSQISRRD 114

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +L  +  S N  + +  +   G +  F   M+ KA  +GM+NT Y   +GL   N ++T
Sbjct: 115 MLLLALMSSENRAAASLAQNYPGGKNAFVKAMNAKAHALGMKNTRYVEPTGLSLHN-VST 173

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT--NHNKLL-NKMHNIDGIKTG 243
           ARD   L ++  + +P   ++ +  +    FR+ N  +   N N L+ NK  NI   KTG
Sbjct: 174 ARDLTRL-LVASRQYPLLSQWSTTPEKTVAFRHPNYTLGFRNTNHLINNKTWNIQLTKTG 232

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVM 268
           +T  +G  +V        P+  VV+
Sbjct: 233 FTNEAGHCLVMRTTINRSPVNLVVL 257


>gi|256851221|ref|ZP_05556610.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           jensenii 27-2-CHN]
 gi|260660645|ref|ZP_05861560.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           jensenii 115-3-CHN]
 gi|297206087|ref|ZP_06923482.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           jensenii JV-V16]
 gi|256616283|gb|EEU21471.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           jensenii 27-2-CHN]
 gi|260548367|gb|EEX24342.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           jensenii 115-3-CHN]
 gi|297149213|gb|EFH29511.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           jensenii JV-V16]
          Length = 397

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 39/228 (17%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGIL 133
           ASLTK++TL +I E +   KL  + +I +SK  A        S + L     +T    I 
Sbjct: 67  ASLTKILTLAVIMEDIHKHKLDWDQEIQISKDVAKVADDWRFSNVPLIYNERYTVRSLIE 126

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           +++  SA+  + A     +GS   F   M   AK+ G++N    N  GL           
Sbjct: 127 SMMIVSADGSTEALALADAGSVAAFNYKMKVVAKRAGVKNPEIYNMIGLSNGELGNLKLP 186

Query: 184 --DKNQIT--TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNI-- 237
             D NQ    +A+D A++   L   +P+     +I K +Y N  I+  N++  KM NI  
Sbjct: 187 KIDDNQENQFSAKDMALISKYLIDKYPE---VLNITKTKYANFKISQDNEI--KMENIIY 241

Query: 238 --------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
                         DG+KTG T  +G+  V +  + +  ++ VV+ +P
Sbjct: 242 MLEGMGYGPKKGTMDGLKTGKTDAAGYCYVGTGTFDNRRVITVVLDVP 289


>gi|282934688|ref|ZP_06339931.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
           208-1]
 gi|281301263|gb|EFA93564.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
           208-1]
          Length = 395

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 39/228 (17%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGIL 133
           ASLTK++TL +I E +   KL  + +I +SK  A        S + L     +T    I 
Sbjct: 65  ASLTKILTLAVIMEDIHKHKLDWDQEIQISKDVAKVADDWRFSNVPLIYNERYTVRSLIE 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           +++  SA+  + A     +GS   F   M   AK+ G++N    N  GL           
Sbjct: 125 SMMIVSADGSTEALALADAGSVAAFNYKMKVVAKRAGVKNPEIYNMIGLSNGELGNLKLP 184

Query: 184 --DKNQIT--TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNI-- 237
             D NQ    +A+D A++   L   +P+     +I K +Y N  I+  N++  KM NI  
Sbjct: 185 KIDDNQENQFSAKDMALISKYLIDKYPE---VLNITKTKYANFKISQDNEI--KMENIIY 239

Query: 238 --------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
                         DG+KTG T  +G+  V +  + +  ++ VV+ +P
Sbjct: 240 MLEGMGYGPKKGTMDGLKTGKTDAAGYCYVGTGTFDNRRVITVVLDVP 287


>gi|15596066|ref|NP_249560.1| D-alanyl-D-alanine endopeptidase [Pseudomonas aeruginosa PAO1]
 gi|107100327|ref|ZP_01364245.1| hypothetical protein PaerPA_01001352 [Pseudomonas aeruginosa PACS2]
 gi|116048793|ref|YP_792407.1| D-alanyl-D-alanine endopeptidase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893162|ref|YP_002442031.1| D-alanyl-D-alanine endopeptidase [Pseudomonas aeruginosa LESB58]
 gi|254239222|ref|ZP_04932545.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa C3719]
 gi|254245156|ref|ZP_04938478.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa 2192]
 gi|12230964|sp|P72161|PBP5_PSEAE RecName: Full=D-alanyl-D-alanine endopeptidase;
           Short=DD-endopeptidase; AltName: Full=Penicillin-binding
           protein 5; Short=PBP-5; Flags: Precursor
 gi|9946767|gb|AAG04258.1|AE004521_9 D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa PAO1]
 gi|115584014|gb|ABJ10029.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126171153|gb|EAZ56664.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa C3719]
 gi|126198534|gb|EAZ62597.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa 2192]
 gi|218773390|emb|CAW29202.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa LESB58]
          Length = 310

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 121/265 (45%), Gaps = 31/265 (11%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKY-------------SSIVIDVNKNQMTGFKQD 72
           RN  L    LFLS+   S+A+ + A P               S++V D N  ++   +  
Sbjct: 2   RNRLLSLVTLFLSL---SVATAVSASPPPKAGLPLQQELASGSALVTDQNTGKVLYSRNP 58

Query: 73  EPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-LKEKTYFTTEQ 130
           +   P AS+TK+MT  ++ +     KL L+  +P++ +  ++       ++  +  +   
Sbjct: 59  DLVVPIASITKLMTAMVVLD----SKLPLDEVLPIAISETSEMRGVFSRVRVGSQISRRD 114

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +L  +  S N  + +  +   G +  F   M+ KA  +GM+NT Y   +GL   N ++T
Sbjct: 115 MLLLALMSSENRAAASLAQNYPGGKNAFVKAMNAKAHALGMKNTRYVEPTGLSLHN-VST 173

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT--NHNKLL-NKMHNIDGIKTG 243
           ARD   L ++  + +P   ++ +  +    FR+ N  +   N N L+ NK  NI   KTG
Sbjct: 174 ARDLTRL-LVASRQYPLLSQWSTTPEKTVAFRHPNYTLGFRNTNHLINNKTWNIQLTKTG 232

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVM 268
           +T  +G  +V        P+  VV+
Sbjct: 233 FTNEAGHCLVMRTTINRSPVNLVVL 257


>gi|309805391|ref|ZP_07699440.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners
           LactinV 09V1-c]
 gi|308165318|gb|EFO67552.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners
           LactinV 09V1-c]
          Length = 425

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 108/244 (44%), Gaps = 29/244 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK--TAA 111
           ++I+ D+   Q+   K    + P AS++K++T+Y+  + +++ KL   T++  S+   A 
Sbjct: 64  AAIIYDLKSGQIMYAKNITQKLPVASMSKLLTIYLTLKAIKAGKLSWQTKVMPSREAIAV 123

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           ++NP  S + L+    +T  Q   A + +SAN  +      ++GS KKF  +M  +    
Sbjct: 124 SKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRKQLLDW 183

Query: 170 GMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
            +        SGL               D     +A D  IL   L   FPQ      I 
Sbjct: 184 HISQAQIVTPSGLPNFTLGRDADSTKNADAENELSASDMGILIKHLLLEFPQVLDTTRIS 243

Query: 216 KFRYRNR----IITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           K  + +      + N N +L      N+ + +DG+KTG T  +G  + ++L      IV 
Sbjct: 244 KLNFPDGHNTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGACLASTLVKNGRRIVT 303

Query: 266 VVMG 269
           V++G
Sbjct: 304 VIIG 307


>gi|1518782|gb|AAC46341.1| penicillin-binding protein 5 [Pseudomonas aeruginosa]
          Length = 311

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 121/265 (45%), Gaps = 31/265 (11%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKY-------------SSIVIDVNKNQMTGFKQD 72
           RN  L    LFLS+   S+A+ + A P               S++V D N  ++   +  
Sbjct: 2   RNRLLSLVTLFLSL---SVATAVSASPPPKAGLPLQQELASGSALVTDQNTGKVLYSRNP 58

Query: 73  EPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-LKEKTYFTTEQ 130
           +   P AS+TK+MT  ++ +     KL L+  +P++ +  ++       ++  +  +   
Sbjct: 59  DLVVPIASITKLMTAMVVLD----SKLPLDEVLPIAISETSEMRGVFSRVRVGSQISRRD 114

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +L  +  S N  + +  +   G +  F   M+ KA  +GM+NT Y   +GL   N ++T
Sbjct: 115 MLLLALMSSENRAAASLAQNYPGGKNAFVKAMNAKAHALGMKNTRYVEPTGLSLHN-VST 173

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT--NHNKLL-NKMHNIDGIKTG 243
           ARD   L ++  + +P   ++ +  +    FR+ N  +   N N L+ NK  NI   KTG
Sbjct: 174 ARDLTRL-LVASRQYPLLSQWSTTPEKTVAFRHPNYTLGFRNTNHLINNKTWNIQLTKTG 232

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVM 268
           +T  +G  +V        P+  VV+
Sbjct: 233 FTNEAGHCLVMRTTINRSPVNLVVL 257


>gi|229163983|ref|ZP_04291922.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
 gi|228619485|gb|EEK76372.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
          Length = 273

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 93/178 (52%), Gaps = 15/178 (8%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASLT 81
           +M   LF  +I +S A    A    +P  +    I I  +  ++  G ++DE  YPAS+ 
Sbjct: 3   VMIATLFTGMIFLSYAHRQQAVRADQPSITGQYGITIAADTGEILYGKREDERSYPASIA 62

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I +++ A  T++ SK + L+       ++ +  ++  S
Sbjct: 63  KMMTTLLLLENVKE-----DEEITITENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 117

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        +  D AI+
Sbjct: 118 ADPIAESIAEHIAGSKNEFVKMMNERAKELGTKHATFKNASGADALGNKVSPYDIAII 175


>gi|302190851|ref|ZP_07267105.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus iners AB-1]
          Length = 425

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 114/244 (46%), Gaps = 29/244 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK--TAA 111
           ++I+ D+   Q+   K  + + P AS++K++T+Y+  + + + K+   T++  S+   A 
Sbjct: 64  AAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAINAGKISWQTKVMPSREAIAV 123

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           ++NP  S + L+    +T  Q   A + +SAN  +      ++GS KKF  +M  +    
Sbjct: 124 SKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRKQLLDW 183

Query: 170 GMQNTIYKNASGL--------HDKNQITTARDQ---AILGILLRK---NFPQYYKYFSIR 215
            +        SGL         D N+   A ++   + +GIL++     FPQ      I 
Sbjct: 184 HISQAQIVTPSGLPNFTLGRDADSNKNADAENELSASDIGILIKHLLLEFPQVLDTTRIS 243

Query: 216 KFRYRNR----IITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           K  + +      + N N +L      N+ + +DG+KTG T  +G  + ++L      IV 
Sbjct: 244 KLNFPDGHNTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGACLASTLVKNGRRIVT 303

Query: 266 VVMG 269
           V++G
Sbjct: 304 VIIG 307


>gi|302335807|ref|YP_003801014.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Olsenella uli
           DSM 7084]
 gi|301319647|gb|ADK68134.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Olsenella uli
           DSM 7084]
          Length = 305

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 101/233 (43%), Gaps = 26/233 (11%)

Query: 58  VIDVNKN-QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----AT 112
           V DV  + ++     D+ R PASL K+MT Y+   ++      L++  PVS  A     T
Sbjct: 58  VYDVTDDREVISVNGDQRRAPASLAKLMTTYVALRHVDD----LSSLAPVSSEAYARAVT 113

Query: 113 QNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            N S       E+T F     + A +  S  + + +  E   GS       M+  A + G
Sbjct: 114 GNCSMAGFVPGERTTF--RDLMYATMLVSGGEAAMSLAENACGSTDACVAEMNEVAGQWG 171

Query: 171 MQNTIYKNASGLHDKNQITTARDQAIL--GILLRKNFPQYY---KYFSIRKFRYRNRIIT 225
           +++T Y+N  GL  + Q TTARD A L    L   NF   +   ++ S     + + ++ 
Sbjct: 172 LRDTSYRNVEGLDAEGQHTTARDVASLVRHALEDGNFRTLFCTPQFGSSPTTAHPDGVLL 231

Query: 226 NHNKLLNKMHNID-------GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
             + +L+K+   D       G K+G T ++G    T         + VVMG P
Sbjct: 232 -ESTVLSKLGRYDTRGFTILGGKSGTTGDAGLCWATLAEKGGHRYIVVVMGAP 283


>gi|296120094|ref|ZP_06838648.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295967248|gb|EFG80519.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 480

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 18/221 (8%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           IV D++  ++   K    RY PAS+ K++   +  + L  KK+   T     + AA    
Sbjct: 162 IVSDLDSGEIVAMKDPHGRYRPASILKVLLAMVAIDELDLKKVVTGTD----EDAAIDG- 216

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S + +    ++T EQ +  L+  S ND + A  + + G E+     ++  A+ +G ++T 
Sbjct: 217 SAVGIGPGGHYTVEQLLQGLLMASGNDAAHALAQQLGGDEETL-TKINQLAQDLGARSTF 275

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY------RNRIITNHNK 229
             + SGL      T+A D A+L     KN P + +        +          + N N 
Sbjct: 276 AASYSGLDAPGMSTSASDMALLYTEAFKN-PTFARMVGTDTAEFPGYGDLEGYELGNDNG 334

Query: 230 LLNKMHNIDGI--KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           L   M++ DGI  KTGYT ++    V +L      ++AV++
Sbjct: 335 LF--MNDPDGIGGKTGYTDDANHTFVGALDRDGRRLMAVIL 373


>gi|15923632|ref|NP_371166.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926319|ref|NP_373852.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148267101|ref|YP_001246044.1| Serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150393149|ref|YP_001315824.1| Serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156978970|ref|YP_001441229.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315285|ref|ZP_04838498.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|255005435|ref|ZP_05144036.2| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795094|ref|ZP_05644073.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           A9781]
 gi|258418353|ref|ZP_05682618.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           A9763]
 gi|258419969|ref|ZP_05682927.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           A9719]
 gi|258430843|ref|ZP_05688555.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           A9299]
 gi|258441664|ref|ZP_05690936.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           A8115]
 gi|258445900|ref|ZP_05694077.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           A6300]
 gi|258449705|ref|ZP_05697807.1| penicillin binding protein 4 [Staphylococcus aureus A6224]
 gi|258454106|ref|ZP_05702078.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           A5937]
 gi|269202263|ref|YP_003281532.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282894406|ref|ZP_06302635.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
           5/6) [Staphylococcus aureus A8117]
 gi|282926504|ref|ZP_06334134.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
           5/6) [Staphylococcus aureus A10102]
 gi|295407421|ref|ZP_06817217.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus A8819]
 gi|296274707|ref|ZP_06857214.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297246543|ref|ZP_06930379.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus A8796]
 gi|13700533|dbj|BAB41830.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
           N315]
 gi|14246411|dbj|BAB56804.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|147740170|gb|ABQ48468.1| Serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149945601|gb|ABR51537.1| Serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156721105|dbj|BAF77522.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257789066|gb|EEV27406.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           A9781]
 gi|257839146|gb|EEV63625.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           A9763]
 gi|257844052|gb|EEV68443.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           A9719]
 gi|257849515|gb|EEV73485.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           A9299]
 gi|257852133|gb|EEV76060.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           A8115]
 gi|257855476|gb|EEV78414.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           A6300]
 gi|257857213|gb|EEV80112.1| penicillin binding protein 4 [Staphylococcus aureus A6224]
 gi|257863971|gb|EEV86727.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           A5937]
 gi|262074553|gb|ACY10526.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282591397|gb|EFB96469.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
           5/6) [Staphylococcus aureus A10102]
 gi|282763119|gb|EFC03250.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
           5/6) [Staphylococcus aureus A8117]
 gi|285816342|gb|ADC36829.1| D-alanyl-D-alanine carboxypeptidase / Penicillin binding protein
           PBP4 [Staphylococcus aureus 04-02981]
 gi|294967702|gb|EFG43735.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus A8819]
 gi|297176574|gb|EFH35838.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus A8796]
 gi|312829136|emb|CBX33978.1| D-alanyl-D-alanine carboxypeptidase family protein [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315128480|gb|EFT84487.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329724987|gb|EGG61485.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 431

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 30/219 (13%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTYFTTEQ 130
           PAS+TK+MT+Y+  E +   +L L+  + ++       T    + +KLY  +   +T   
Sbjct: 73  PASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQ--VWTIAD 130

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------ 184
            +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT + N +G  +      
Sbjct: 131 LLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRSF 190

Query: 185 -----KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLN 232
                K+Q   +TTARD AIL + + K  P+   +   ++       +T    N +    
Sbjct: 191 APTKYKDQERTVTTARDYAILDLHVIKETPKILDF--TKQLAPTTHAVTYYTFNFSLEGA 248

Query: 233 KMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           KM     DG+KTG +  + +N   + +     I  V+MG
Sbjct: 249 KMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMG 287


>gi|167033128|ref|YP_001668359.1| D-alanyl-D-alanine endopeptidase [Pseudomonas putida GB-1]
 gi|166859616|gb|ABY98023.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pseudomonas
           putida GB-1]
          Length = 308

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 109/228 (47%), Gaps = 25/228 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+++ID+N NQ       +   P AS+TK+MT  ++ +     KL ++  + ++      
Sbjct: 45  SALLIDLNSNQELYSSHADRVVPIASVTKLMTAMVVLD----AKLPMDEMLTMT---IAN 97

Query: 114 NP------SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
           NP      S++ L  +      + +L  +  S N  + +      G    F   M+ KA+
Sbjct: 98  NPEMKGVYSRVRLGSQ--LDRRETLLITLMSSENRAANSLANAYPGGYPAFIKAMNAKAR 155

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRI 223
            +GM +T Y   +GL  +N ++TARD A L +  RK +P   +  + R+    FR  N  
Sbjct: 156 SLGMAHTRYVEPTGLSTQN-VSTARDLAKLLMASRK-YPMLSELSTTREKTVAFRKPNYT 213

Query: 224 IT--NHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +   N + L+NK + +I   KTG+T  +G  +V   R  + P+  V++
Sbjct: 214 LGFRNTDHLVNKSNWDIKLTKTGFTNEAGHCLVLLTRMDNRPVAMVIL 261


>gi|57651483|ref|YP_185581.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           COL]
 gi|87161157|ref|YP_493332.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194413|ref|YP_499206.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|151220824|ref|YP_001331646.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161508904|ref|YP_001574563.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140859|ref|ZP_03565352.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|262048386|ref|ZP_06021271.1| penicillin binding protein 4 [Staphylococcus aureus D30]
 gi|262051768|ref|ZP_06023986.1| penicillin binding protein 4 [Staphylococcus aureus 930918-3]
 gi|282921932|ref|ZP_06329630.1| D-alanyl-D-alanine carboxypeptidase/Penicillin binding protein PBP4
           [Staphylococcus aureus A9765]
 gi|284023665|ref|ZP_06378063.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           132]
 gi|294849312|ref|ZP_06790055.1| D-alanyl-D-alanine carboxypeptidase/Penicillin binding protein PBP4
           [Staphylococcus aureus A9754]
 gi|304381746|ref|ZP_07364394.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|57285669|gb|AAW37763.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           COL]
 gi|87127131|gb|ABD21645.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87201971|gb|ABD29781.1| penicillin-binding protein 4, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|150373624|dbj|BAF66884.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160367713|gb|ABX28684.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|259160379|gb|EEW45405.1| penicillin binding protein 4 [Staphylococcus aureus 930918-3]
 gi|259163474|gb|EEW48031.1| penicillin binding protein 4 [Staphylococcus aureus D30]
 gi|282593785|gb|EFB98776.1| D-alanyl-D-alanine carboxypeptidase/Penicillin binding protein PBP4
           [Staphylococcus aureus A9765]
 gi|294823844|gb|EFG40270.1| D-alanyl-D-alanine carboxypeptidase/Penicillin binding protein PBP4
           [Staphylococcus aureus A9754]
 gi|302750541|gb|ADL64718.1| Serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304339697|gb|EFM05643.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|315197613|gb|EFU27948.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|329313365|gb|AEB87778.1| Penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329729882|gb|EGG66274.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 431

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 30/219 (13%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTYFTTEQ 130
           PAS+TK+MT+Y+  E +   +L L+  + ++       T    + +KLY  +   +T   
Sbjct: 73  PASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQ--VWTIAD 130

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------ 184
            +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT + N +G  +      
Sbjct: 131 LLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRTF 190

Query: 185 -----KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLN 232
                K+Q   +TTARD AIL + + K  P+   +   ++       +T    N +    
Sbjct: 191 APTKYKDQERTVTTARDYAILDLHVIKETPKILDF--TKQLAPTTHAVTYYTFNFSLEGA 248

Query: 233 KMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           KM     DG+KTG +  + +N   + +     I  V+MG
Sbjct: 249 KMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMG 287


>gi|229087522|ref|ZP_04219654.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44]
 gi|228695769|gb|EEL48622.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44]
          Length = 273

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 81/145 (55%), Gaps = 8/145 (5%)

Query: 56  SIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQ 113
           +I ID +  ++  G ++ E  YPAS+ KMMT  ++ E ++      + +I +++ A  T+
Sbjct: 36  AITIDADTGEILYGKREQERSYPASIAKMMTTLLLLENVKK-----DEEITITENAIKTE 90

Query: 114 NPSK-LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           + SK + L+       ++ +  ++  SA+ VS +  E I+GS++ F  +M+ +AK++G +
Sbjct: 91  SQSKKIKLRAGEKLKRDEALKLMLIISADPVSESIAEHIAGSKEAFIKMMNARAKELGTK 150

Query: 173 NTIYKNASGLHDKNQITTARDQAIL 197
           +  +KNASG        +  D AI+
Sbjct: 151 HATFKNASGADALGNKVSPYDIAII 175


>gi|258452851|ref|ZP_05700845.1| penicillin-binding protein 4 [Staphylococcus aureus A5948]
 gi|257859362|gb|EEV82216.1| penicillin-binding protein 4 [Staphylococcus aureus A5948]
          Length = 431

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 30/219 (13%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTYFTTEQ 130
           PAS+TK+MT+Y+  E +   +L L+  + ++       T    + +KLY  +   +T   
Sbjct: 73  PASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQ--VWTIAD 130

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------ 184
            +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT + N +G  +      
Sbjct: 131 LLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRTF 190

Query: 185 -----KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLN 232
                K+Q   +TTARD AIL + + K  P+   +   ++       +T    N +    
Sbjct: 191 APTKYKDQERTVTTARDYAILDLHVIKETPKILDF--TKQLAPTTHAVTYYTFNFSLEGA 248

Query: 233 KMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           KM     DG+KTG +  + +N   + +     I  V+MG
Sbjct: 249 KMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMG 287


>gi|269940219|emb|CBI48596.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           TW20]
          Length = 431

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 30/219 (13%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTYFTTEQ 130
           PAS+TK+MT+Y+  E +   +L L+  + ++       T    + +KLY  +   +T   
Sbjct: 73  PASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQ--VWTIAD 130

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------ 184
            +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT + N +G  +      
Sbjct: 131 LLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRTF 190

Query: 185 -----KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLN 232
                K+Q   +TTARD AIL + + K  P+   +   ++       +T    N +    
Sbjct: 191 APTKYKDQERTVTTARDYAILDLHVIKETPKILDF--TKQLAPTTHAVTYYTFNFSLEGA 248

Query: 233 KMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           KM     DG+KTG +  + +N   + +     I  V+MG
Sbjct: 249 KMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMG 287


>gi|257427430|ref|ZP_05603829.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430061|ref|ZP_05606445.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432763|ref|ZP_05609123.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435667|ref|ZP_05611715.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           M876]
 gi|282903234|ref|ZP_06311125.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905021|ref|ZP_06312879.1| D-alanyl-D-alanine carboxypeptidase penicillin binding protein 5/6
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282907979|ref|ZP_06315813.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910286|ref|ZP_06318090.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282913479|ref|ZP_06321268.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           M899]
 gi|282918432|ref|ZP_06326169.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
           aureus C427]
 gi|282923397|ref|ZP_06331077.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
           5/6) [Staphylococcus aureus subsp. aureus C101]
 gi|283957442|ref|ZP_06374895.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293500526|ref|ZP_06666377.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293509471|ref|ZP_06668182.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
           aureus M809]
 gi|293524058|ref|ZP_06670745.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           M1015]
 gi|297590466|ref|ZP_06949105.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           MN8]
 gi|257275623|gb|EEV07096.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257279258|gb|EEV09859.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257282178|gb|EEV12313.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284858|gb|EEV14977.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           M876]
 gi|282314265|gb|EFB44655.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
           5/6) [Staphylococcus aureus subsp. aureus C101]
 gi|282317566|gb|EFB47938.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
           aureus C427]
 gi|282322511|gb|EFB52833.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           M899]
 gi|282325678|gb|EFB55986.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282328224|gb|EFB58503.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331846|gb|EFB61357.1| D-alanyl-D-alanine carboxypeptidase penicillin binding protein 5/6
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282596189|gb|EFC01150.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           C160]
 gi|283790893|gb|EFC29708.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290921021|gb|EFD98082.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291095531|gb|EFE25792.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467568|gb|EFF10083.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
           aureus M809]
 gi|297576765|gb|EFH95480.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           MN8]
 gi|312438936|gb|ADQ78007.1| D-alanyl-D-alanine
           carboxypeptidase\/D-alanyl-D-alanine-endopeptidase
           [Staphylococcus aureus subsp. aureus TCH60]
 gi|315194012|gb|EFU24406.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 431

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 30/219 (13%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTYFTTEQ 130
           PAS+TK+MT+Y+  E +   +L L+  + ++       T    + +KLY  +   +T   
Sbjct: 73  PASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQ--VWTIAD 130

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------ 184
            +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT + N +G  +      
Sbjct: 131 LLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRTF 190

Query: 185 -----KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLN 232
                K+Q   +TTARD AIL + + K  P+   +   ++       +T    N +    
Sbjct: 191 APTKYKDQERTVTTARDYAILDLHVIKETPKILDF--TKQLAPTTHAVTYYTFNFSLEGA 248

Query: 233 KMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           KM     DG+KTG +  + +N   + +     I  V+MG
Sbjct: 249 KMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMG 287


>gi|269929251|ref|YP_003321572.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sphaerobacter
           thermophilus DSM 20745]
 gi|269788608|gb|ACZ40750.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sphaerobacter
           thermophilus DSM 20745]
          Length = 338

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 110/232 (47%), Gaps = 36/232 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ-----IPVSKTAATQNPSKLYLKEKTYF 126
           DEP  PAS  K++T   +  +   +++ L  Q      PV++       S + L+     
Sbjct: 104 DEPLPPASTAKIVTALTVLRHAGLEEV-LTVQEEDLVDPVAE-------SHMGLQAGDTV 155

Query: 127 TTEQGILALITRSAND----VSTAFGEFISGSE---KKFAILMSNKAKKIGMQNTIYKNA 179
           T    ++ L+  S ND    +S   GE + G +   ++FA  M+  A ++GM  + + + 
Sbjct: 156 TVHDLLVGLLLPSGNDAAKTLSRVIGERLPGDQPPVERFAAAMNAVAAELGMTGSHFVDP 215

Query: 180 SGLHDKNQITTARDQAILG-ILLRKNFPQYYKYFSIRKFRYR-----NRII--TNHNKLL 231
           SG   + Q+ TARD  I    LLR+  P      ++++   R      R+I   N N+LL
Sbjct: 216 SGDDAEGQVVTARDMVIAARALLRE--PVLVSIVAMQRAEVRIGGPKARVIRLENTNQLL 273

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER--DQKAL 281
            +   + GIKTG T  +G  ++ + R      +AV++G   SQ+R  D +AL
Sbjct: 274 AQ-DGVFGIKTGTTDQAGQCLLVAYRAPSGTQIAVILG---SQDRYGDARAL 321


>gi|47570691|ref|ZP_00241288.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
 gi|47552642|gb|EAL11096.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
          Length = 259

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 100/205 (48%), Gaps = 37/205 (18%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFTTEQGIL 133
           AS++K++ +Y + E ++  K+  +T++ +S  A   ++N   S +  ++   +T  +   
Sbjct: 59  ASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYTVRELYH 118

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN------- 186
           +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ +       
Sbjct: 119 SIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHPE 178

Query: 187 -------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNI-- 237
                     +ARD   +GIL +    +Y +     K R+RN    NH K + +M N   
Sbjct: 179 GTDPNAENSMSARD---MGILSKAMITKYPEMLEDTKQRFRN-FPDNHPKPI-RMENWNW 233

Query: 238 ------------DGIKTGYTRNSGF 250
                       +G+KTG +  +G+
Sbjct: 234 MLPGAAFAYEGTNGLKTGSSDTAGY 258


>gi|1125682|emb|CAA60585.1| penicillin binding protein 4 [Staphylococcus aureus]
 gi|1125686|emb|CAA60582.1| penicillin binding protein 4 [Staphylococcus aureus]
          Length = 431

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 30/219 (13%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTYFTTEQ 130
           PAS+TK+MT+Y+  E +   +L L+  + ++       T    + +KLY  +   +T   
Sbjct: 73  PASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQ--VWTIAD 130

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------ 184
            +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT + N +G  +      
Sbjct: 131 LLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRTF 190

Query: 185 -----KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLN 232
                K+Q   +TTARD AIL + + K  P+   +   ++       +T    N +    
Sbjct: 191 APTKYKDQERTVTTARDYAILDLHVIKETPKILDF--TKQLAPTTHAVTYYTFNFSLEGA 248

Query: 233 KMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           KM     DG+KTG +  + +N   + +     I  V+MG
Sbjct: 249 KMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMG 287


>gi|26990499|ref|NP_745924.1| D-alanyl-D-alanine endopeptidase [Pseudomonas putida KT2440]
 gi|24985474|gb|AAN69388.1|AE016575_6 D-alanyl-D-alanine-endopeptidase [Pseudomonas putida KT2440]
          Length = 308

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 109/228 (47%), Gaps = 25/228 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+++ID+N NQ       +   P AS+TK+MT  ++ +     KL ++  + ++      
Sbjct: 45  SALLIDLNSNQELYSSHADRVVPIASVTKLMTAMVVLD----AKLPMDEMLTMT---IAN 97

Query: 114 NP------SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
           NP      S++ L  +      + +L  +  S N  + +      G    F   M+ KA+
Sbjct: 98  NPEMKGVYSRVRLGSQ--LDRRETLLITLMSSENRAANSLANAYPGGYPAFIKAMNAKAR 155

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRI 223
            +GM +T Y   +GL  +N ++TARD A L +  RK +P   +  + R+    FR  N  
Sbjct: 156 SLGMAHTRYVEPTGLSTQN-VSTARDLAKLLMASRK-YPMLSELSTTREKTVAFRKPNYT 213

Query: 224 IT--NHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +   N + L+NK + +I   KTG+T  +G  +V   R  + P+  V++
Sbjct: 214 LGFRNTDHLVNKSNWDIKLTKTGFTNEAGHCLVLLTRMDNRPVAMVIL 261


>gi|329729569|gb|EGG65970.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 431

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 30/219 (13%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTYFTTEQ 130
           PAS+TK+MT+Y+  E +   +L L+  + ++       T    + +KLY  +   +T   
Sbjct: 73  PASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQ--VWTIAD 130

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------ 184
            +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT + N +G  +      
Sbjct: 131 LLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRSF 190

Query: 185 -----KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLN 232
                K+Q   +TTARD AIL + + K  P+   +   ++       +T    N +    
Sbjct: 191 APTKYKDQERTVTTARDYAILDLHVIKETPKILDF--TKQLAPTTHAVTYYTFNFSLEGA 248

Query: 233 KMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           KM     DG+KTG +  + +N   + +     I  V+MG
Sbjct: 249 KMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMG 287


>gi|253732917|ref|ZP_04867082.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253729097|gb|EES97826.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 414

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 30/219 (13%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTYFTTEQ 130
           PAS+TK+MT+Y+  E +   +L L+  + ++       T    + +KLY  +   +T   
Sbjct: 56  PASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQ--VWTIAD 113

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------ 184
            +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT + N +G  +      
Sbjct: 114 LLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRSF 173

Query: 185 -----KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLN 232
                K+Q   +TTARD AIL + + K  P+   +   ++       +T    N +    
Sbjct: 174 APTKYKDQERTVTTARDYAILDLHVIKETPKILDF--TKQLAPTTHAVTYYTFNFSLEGA 231

Query: 233 KMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           KM     DG+KTG +  + +N   + +     I  V+MG
Sbjct: 232 KMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMG 270


>gi|82750345|ref|YP_416086.1| penicillin binding protein 4 [Staphylococcus aureus RF122]
 gi|82655876|emb|CAI80280.1| penicillin binding protein 4 [Staphylococcus aureus RF122]
          Length = 431

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 30/219 (13%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTYFTTEQ 130
           PAS+TK+MT+Y+  E +   +L L+  + ++       T    + +KLY  +   +T   
Sbjct: 73  PASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQ--VWTIAD 130

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------ 184
            +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT + N +G  +      
Sbjct: 131 LLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRTF 190

Query: 185 -----KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLN 232
                K+Q   +TTARD AIL + + K  P+   +   ++       +T    N +    
Sbjct: 191 APTKYKDQERTVTTARDYAILDLHVIKETPKILDF--TKQLAPTTHAVTYYTFNFSLEGA 248

Query: 233 KMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           KM     DG+KTG +  + +N   + +     I  V+MG
Sbjct: 249 KMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMG 287


>gi|49482870|ref|YP_040094.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295427185|ref|ZP_06819821.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|49240999|emb|CAG39669.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295128973|gb|EFG58603.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
           aureus EMRSA16]
          Length = 431

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 30/219 (13%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTYFTTEQ 130
           PAS+TK+MT+Y+  E +   +L L+  + ++       T    + +KLY  +   +T   
Sbjct: 73  PASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQ--VWTIAD 130

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------ 184
            +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT + N +G  +      
Sbjct: 131 LLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRTF 190

Query: 185 -----KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLN 232
                K+Q   +TTARD AIL + + K  P+   +   ++       +T    N +    
Sbjct: 191 APTKYKDQERTVTTARDYAILDLHVIKETPKILDF--TKQLAPTTHAVTYYTFNFSLEGA 248

Query: 233 KMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           KM     DG+KTG +  + +N   + +     I  V+MG
Sbjct: 249 KMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMG 287


>gi|148544752|ref|YP_001272122.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri DSM
           20016]
 gi|184154105|ref|YP_001842446.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus reuteri JCM
           1112]
 gi|227363878|ref|ZP_03847983.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
           MM2-3]
 gi|325683088|ref|ZP_08162604.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           reuteri MM4-1A]
 gi|148531786|gb|ABQ83785.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri DSM
           20016]
 gi|183225449|dbj|BAG25966.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus reuteri JCM
           1112]
 gi|227071105|gb|EEI09423.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
           MM2-3]
 gi|324977438|gb|EGC14389.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           reuteri MM4-1A]
          Length = 414

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 122/274 (44%), Gaps = 37/274 (13%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMT 85
           +I L G  +F  +   + A ++ A+  Y+   ID    Q+   K    RYP AS+ K++T
Sbjct: 19  SICLNGLGMFEKVHADTAAFQMDARAAYA---IDAESGQVLYQKNATKRYPIASVIKILT 75

Query: 86  LYIIFEYLQSKKLHLNTQI----PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           L +I + +++  L  + +I     V+K A   + S + L     +T  Q + +++  SA+
Sbjct: 76  LGVILQDIRNHHLKWDQKIKITPAVAKMADDWHFSNVPLMNGEEYTVRQLVDSMMLVSAD 135

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HDKNQ 187
             + A     +GS   F   M   AKK G+ +    N  GL               D   
Sbjct: 136 GSTEALALADAGSTAAFNKKMMAFAKKAGVTDIKIYNMIGLPNGDLGKHKLKGVDKDAEN 195

Query: 188 ITTARDQAILGILLRKNFP-------QYYKYFSIRKFRYRNRIITNHNKLLN------KM 234
           + +A+D A++   L +N+P       Q +  F + K   +  ++TN N LL       K 
Sbjct: 196 LLSAKDVALISKYLVENYPETLDITKQKFANFDVTK--DQQYLMTNVNALLPQNGFAPKD 253

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             IDG+KTG T  +G  IV++  +    I+ V +
Sbjct: 254 GEIDGLKTGNTDRAGKCIVSTGTFAGRRIILVAL 287


>gi|320140025|gb|EFW31886.1| beta-lactamase [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320141884|gb|EFW33712.1| beta-lactamase [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 414

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 30/219 (13%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTYFTTEQ 130
           PAS+TK+MT+Y+  E +   +L L+  + ++       T    + +KLY  +   +T   
Sbjct: 56  PASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQ--VWTIAD 113

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------ 184
            +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT + N +G  +      
Sbjct: 114 LLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRTF 173

Query: 185 -----KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLN 232
                K+Q   +TTARD AIL + + K  P+   +   ++       +T    N +    
Sbjct: 174 APTKYKDQERTVTTARDYAILDLHVIKETPKILDF--TKQLAPTTHAVTYYTFNFSLEGA 231

Query: 233 KMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           KM     DG+KTG +  + +N   + +     I  V+MG
Sbjct: 232 KMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMG 270


>gi|283469938|emb|CAQ49149.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
           ST398]
 gi|298693973|gb|ADI97195.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 431

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 30/219 (13%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTYFTTEQ 130
           PAS+TK+MT+Y+  E +   +L L+  + ++       T    + +KLY  +   +T   
Sbjct: 73  PASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQ--VWTIAD 130

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------ 184
            +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT + N +G  +      
Sbjct: 131 LLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRTF 190

Query: 185 -----KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLN 232
                K+Q   +TTARD AIL + + K  P+   +   ++       +T    N +    
Sbjct: 191 APTKYKDQERTVTTARDYAILDLHVIKETPKILDF--TKQLAPTTHAVTYYTFNFSLEGA 248

Query: 233 KMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           KM     DG+KTG +  + +N   + +     I  V+MG
Sbjct: 249 KMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMG 287


>gi|266618633|pdb|3HUM|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 From
           Staphylococcus Aureus Col In Complex With Cefotaxime
 gi|266618634|pdb|3HUM|B Chain B, Crystal Structure Of Penicillin Binding Protein 4 From
           Staphylococcus Aureus Col In Complex With Cefotaxime
 gi|266618635|pdb|3HUN|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 From
           Staphylococcus Aureus Col In Complex With Ampicillin
 gi|266618636|pdb|3HUN|B Chain B, Crystal Structure Of Penicillin Binding Protein 4 From
           Staphylococcus Aureus Col In Complex With Ampicillin
          Length = 453

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 30/219 (13%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTYFTTEQ 130
           PAS+TK+MT+Y+  E +   +L L+  + ++       T    + +KLY  +   +T   
Sbjct: 95  PASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQ--VWTIAD 152

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------ 184
            +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT + N +G  +      
Sbjct: 153 LLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRSF 212

Query: 185 -----KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLN 232
                K+Q   +TTARD AIL + + K  P+   +   ++       +T    N +    
Sbjct: 213 APTKYKDQERTVTTARDYAILDLHVIKETPKILDF--TKQLAPTTHAVTYYTFNFSLEGA 270

Query: 233 KMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           KM     DG+KTG +  + +N   + +     I  V+MG
Sbjct: 271 KMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMG 309


>gi|21282333|ref|NP_645421.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485514|ref|YP_042735.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297208633|ref|ZP_06925062.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300912725|ref|ZP_07130168.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|21203770|dbj|BAB94469.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49243957|emb|CAG42383.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296886888|gb|EFH25792.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300886971|gb|EFK82173.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           TCH70]
          Length = 431

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 30/219 (13%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTYFTTEQ 130
           PAS+TK+MT+Y+  E +   +L L+  + ++       T    + +KLY  +   +T   
Sbjct: 73  PASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQ--VWTIAD 130

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------ 184
            +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT + N +G  +      
Sbjct: 131 LLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRSF 190

Query: 185 -----KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLN 232
                K+Q   +TTARD AIL + + K  P+   +   ++       +T    N +    
Sbjct: 191 APTKYKDQERTVTTARDYAILDLHVIKETPKILDF--TKQLAPTTHAVTYYTFNFSLEGA 248

Query: 233 KMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           KM     DG+KTG +  + +N   + +     I  V+MG
Sbjct: 249 KMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMG 287


>gi|302332352|gb|ADL22545.1| Serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 431

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 30/219 (13%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTYFTTEQ 130
           PAS+TK+MT+Y+  E +   +L L+  + ++       T    + +KLY  +   +T   
Sbjct: 73  PASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQ--VWTIAD 130

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------ 184
            +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT + N +G  +      
Sbjct: 131 LLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRTF 190

Query: 185 -----KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLN 232
                K+Q   +TTARD AIL + + K  P+   +   ++       +T    N +    
Sbjct: 191 APTKYKDQERTVTTARDYAILDLHVIKETPKILDF--TKQLAPTTHAVTYYTFNFSLEGA 248

Query: 233 KMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           KM     DG+KTG +  + +N   + +     I  V+MG
Sbjct: 249 KMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMG 287


>gi|323442079|gb|EGA99713.1| penicillin binding protein 4 [Staphylococcus aureus O46]
 gi|333033712|emb|CBZ41973.1| penicillin binding protein 4 [Staphylococcus aureus]
          Length = 431

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 30/219 (13%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTYFTTEQ 130
           PAS+TK+MT+Y+  E +   +L L+  + ++       T    + +KLY  +   +T   
Sbjct: 73  PASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQ--VWTIAD 130

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------ 184
            +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT + N +G  +      
Sbjct: 131 LLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRTF 190

Query: 185 -----KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLN 232
                K+Q   +TTARD AIL + + K  P+   +   ++       +T    N +    
Sbjct: 191 APTKYKDQERTVTTARDYAILDLHVIKETPKILDF--TKQLAPTTHAVTYYTFNFSLEGA 248

Query: 233 KMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           KM     DG+KTG +  + +N   + +     I  V+MG
Sbjct: 249 KMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMG 287


>gi|300173926|ref|YP_003773092.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc gasicomitatum LMG
           18811]
 gi|299888305|emb|CBL92273.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc gasicomitatum LMG
           18811]
          Length = 420

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 139/306 (45%), Gaps = 42/306 (13%)

Query: 26  RNIQLMGKILFLSIIMI-SMASELHAKP------KYSSIVIDVNKNQMTGFKQDEPRYP- 77
           R+I+++G I+ +  +M  ++++   AKP        S+IVID +  Q+   K  +   P 
Sbjct: 2   RHIKIIGAIVAMLFLMTTAVSANAIAKPLEIKQDVSSAIVIDASTGQILAVKNADKLGPI 61

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP---SKLYLKEKTYFTTEQGI 132
           AS +K++T Y + + + S K+  + ++ +SK A  + Q+    S L +K     T  +  
Sbjct: 62  ASQSKLLTAYAVLKAINSGKIKWSDKVTISKKADLSKQDSHLFSHLAVKAGDRLTVRELY 121

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD----KNQI 188
             +IT SAND + A  E+++      A  +   AK++ +  + + N++G  +    +N++
Sbjct: 122 NTMITLSANDAAFALAEYMTPKNMTTAKALQLWAKELKLTQSTWYNSAGQINQDAFENKV 181

Query: 189 TTARDQAI-------LGILLRKNF---PQYYKYFSIRKFRY--RNRIITNHNK------- 229
             A D A+       + I+ R+     P   +  +     Y  RN  I N          
Sbjct: 182 KNAPDNAVNLASPKHVAIIAREIVQLDPNIRELATNTHVSYHLRNNYIVNEPTEMTKNWP 241

Query: 230 -LLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPT---SQERDQKALEL 283
            L+N  H  I+G+KTG T  SG      ++       + VV G  +     +R QK L +
Sbjct: 242 YLINPNHLTIEGLKTGSTPESGAAFTGIIKDSSGHEFITVVNGAASYMDEVQRYQKTLNI 301

Query: 284 ITSFLE 289
           +   LE
Sbjct: 302 VNEVLE 307


>gi|255320984|ref|ZP_05362157.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter radioresistens
           SK82]
 gi|255301948|gb|EET81192.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter radioresistens
           SK82]
          Length = 330

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 29/246 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI---PVSKTA 110
           +++V+D    ++   K      P AS+TK+MT  +  +     +L+++ +I   P+    
Sbjct: 90  AALVMDAQTGEVLFSKNTNTALPIASITKLMTAVVTSD----ARLNMSEEITLQPIDFIG 145

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             +  S L   +K      + +L  + +S N  + A      G +  F   M+ KA+++G
Sbjct: 146 PKKASSTLRAGDK--MNRAEVLLFALMKSENPAAAALARTYPGGKPAFVAAMNAKARELG 203

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR----------YR 220
           M +  +  ++GL  +N + +ARD   LGIL+        +Y  IR+F           YR
Sbjct: 204 MHSAKFYESTGLDARN-VASARD---LGILVSA----ASQYGLIRQFSTTPTYDFNLGYR 255

Query: 221 NRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
                N N L+ N   NI+  KTG+   +G  +V        P + V++G   +Q R+  
Sbjct: 256 VLKSNNTNALVRNGGWNINLSKTGFINEAGRCVVMHATVNQRPAIVVLLGASDTQSRNND 315

Query: 280 ALELIT 285
           A  L +
Sbjct: 316 ATRLFS 321


>gi|257424761|ref|ZP_05601188.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257272331|gb|EEV04454.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           55/2053]
          Length = 455

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 30/219 (13%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTYFTTEQ 130
           PAS+TK+MT+Y+  E +   +L L+  + ++       T    + +KLY  +   +T   
Sbjct: 73  PASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQ--VWTIAD 130

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------ 184
            +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT + N +G  +      
Sbjct: 131 LLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRTF 190

Query: 185 -----KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLN 232
                K+Q   +TTARD AIL + + K  P+   +   ++       +T    N +    
Sbjct: 191 APTKYKDQERTVTTARDYAILDLHVIKETPKILDF--TKQLAPTTHAVTYYTFNFSLEGA 248

Query: 233 KMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           KM     DG+KTG +  + +N   + +     I  V+MG
Sbjct: 249 KMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMG 287


>gi|323439395|gb|EGA97117.1| penicillin binding protein 4 [Staphylococcus aureus O11]
          Length = 431

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 30/219 (13%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTYFTTEQ 130
           PAS+TK+MT+Y+  E +   +L L+  + ++       T    + +KLY  +   +T   
Sbjct: 73  PASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQ--VWTIAD 130

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------ 184
            +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT + N +G  +      
Sbjct: 131 LLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRTF 190

Query: 185 -----KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLN 232
                K+Q   +TTARD AIL + + K  P+   +   ++       +T    N +    
Sbjct: 191 APTKYKDQERTVTTARDYAILDLHVIKETPKILDF--TKQLAPTTHAVTYYTFNFSLEGA 248

Query: 233 KMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           KM     DG+KTG +  + +N   + +     I  V+MG
Sbjct: 249 KMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMG 287


>gi|148547200|ref|YP_001267302.1| D-alanyl-D-alanine endopeptidase [Pseudomonas putida F1]
 gi|148511258|gb|ABQ78118.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Pseudomonas
           putida F1]
          Length = 308

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 109/228 (47%), Gaps = 25/228 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+++ID+N NQ       +   P AS+TK+MT  ++ +     KL ++  + ++      
Sbjct: 45  SALLIDLNSNQELYSSHADRVVPIASVTKLMTAMVVLD----AKLPMDEMLTMT---IAN 97

Query: 114 NP------SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
           NP      S++ L  +      + +L  +  S N  + +      G    F   M+ KA+
Sbjct: 98  NPEMKGVYSRVRLGSQ--LDRRETLLITLMSSENRAANSLANAYPGGYPAFIKAMNAKAR 155

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRI 223
            +GM +T Y   +GL  +N ++TARD A L +  RK +P   +  + R+    FR  N  
Sbjct: 156 SLGMAHTRYVEPTGLSTQN-VSTARDLAKLLMASRK-YPMLSELSTTREKTVAFRKPNYT 213

Query: 224 IT--NHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +   N + L+NK + +I   KTG+T  +G  +V   R  + P+  V++
Sbjct: 214 LGFRNTDHLVNKSNWDIKLTKTGFTNEAGHCLVLLTRMDNRPVAMVIL 261


>gi|291558140|emb|CBL35257.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum V10Sc8a]
          Length = 349

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 98/217 (45%), Gaps = 31/217 (14%)

Query: 76  YPASLTKMMTLYIIFEYLQSK-KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           +PAS TK++T     EY   + + ++ +++ +      Q+ S  ++ E +     + + A
Sbjct: 109 FPASTTKILTALTAIEYTAPEYEYYVGSELGL----VAQDSSMSWIAEGSSLCRNEILTA 164

Query: 135 LITRSANDVSTA---------FGEFISGSEKK--FAILMSNKAKKIGMQNTIYKNASGLH 183
           ++  S ND +           +G+ IS ++    FA+LM++ AKK+G +NT +    G H
Sbjct: 165 MLAPSGNDAAYTIAVNVARKLYGDDISDNDAVAYFAVLMNDYAKKLGAKNTHFTVPDGYH 224

Query: 184 DKNQITTARD-----------QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           D    TTA D           Q I  I  +     Y +  ++  +   N+++T+      
Sbjct: 225 DDEHYTTAEDMLKFAIAATQSQTICDITCQPLAIVYDEQGNVHSWDNGNKLLTD----TT 280

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
             + + G+KTG+T  +GF  +         I+ +V G
Sbjct: 281 IPYEVYGMKTGFTDEAGFCFIGYAGMNGKKILTLVYG 317


>gi|1262137|emb|CAA62899.1| penicillin-binding protein 4 [Staphylococcus aureus]
          Length = 431

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 102/230 (44%), Gaps = 52/230 (22%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTYFTTEQ 130
           PAS+TK+MT+Y+  E +   +L L+  + ++       T    + +KLY  +   +T   
Sbjct: 73  PASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQ--VWTIAD 130

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------ 184
            +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT + N +G  +      
Sbjct: 131 LLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRTF 190

Query: 185 -----KNQ---ITTARDQAILGILLRKNFPQ----------------YYKY-FSIRKFRY 219
                K+Q   +TTARD AIL + + K  P+                YY + FS+   + 
Sbjct: 191 APTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTLAVTYYTFNFSLEGAKM 250

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
                         +   DG+KTG +  + +N   + +     I  V+MG
Sbjct: 251 -------------SLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMG 287


>gi|89894320|ref|YP_517807.1| hypothetical protein DSY1574 [Desulfitobacterium hafniense Y51]
 gi|89333768|dbj|BAE83363.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 352

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 112/229 (48%), Gaps = 21/229 (9%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKL-HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
           D  R PAS  K++T  ++ E LQ+ +L  L  ++ V  +     P    L  K  FT   
Sbjct: 109 DTHRAPASTVKLLTGLLVHEKLQADELITLGEEVKVEGSVLGFKPGDKILV-KDLFT--- 164

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
              A+   SAND + A      G+++KF   M++ A ++G Q++ +K A G+  ++Q TT
Sbjct: 165 ---AMYVYSANDAANALAVAAYGTKEKFIQAMNSYAAELGCQDSQFKTADGMPAEDQYTT 221

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRN---------RIITNHNKLLNKMHNIDGIK 241
           A+D AI+   + +  P    Y + +K              R I+N N+LL       G+K
Sbjct: 222 AKDLAIIAAKVTET-PVLMDYINQKKASVEWTDANGWKQVREISNTNQLLGIYPGDQGLK 280

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           TG T  +G  +VT +  +D  ++ V++G   S++R    +EL+   + K
Sbjct: 281 TGTTTEAGQCLVTYITNEDGDLLLVLLG---SKQRYTDTVELLDQGMAK 326


>gi|312872197|ref|ZP_07732270.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092281|gb|EFQ50652.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF
           2062A-h1]
          Length = 425

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 109/244 (44%), Gaps = 29/244 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK--TAA 111
           ++I+ D+   Q+   K    + P AS++K++T+Y+  + +++ K+   T++  S+   A 
Sbjct: 64  AAIIYDLKSGQIMYAKNITQKLPVASMSKLLTIYLTLKAIKAGKISWQTKVMPSREAIAV 123

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           ++NP  S + L+    +T  Q   A + +SAN  +      ++GS KKF  +M  +    
Sbjct: 124 SKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRKQLLDW 183

Query: 170 GMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
            +        SGL               D     +A D  IL   L   FPQ  +   I 
Sbjct: 184 HISQAQIVTPSGLPNFTLGRDADSTKNADAENELSASDMGILIKHLLLEFPQVLETTRIA 243

Query: 216 KFRY----RNRIITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           K  +    +   + N N +L      N+ + +DG+KTG T  +G  + ++L      IV 
Sbjct: 244 KLDFLDGRKTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGACLASTLVKNGRRIVT 303

Query: 266 VVMG 269
           V++G
Sbjct: 304 VIIG 307


>gi|50513810|pdb|1TVF|A Chain A, Crystal Structure Of Penicillin-Binding Protein 4 (Pbp4)
           From Staphylococcus Aureus
 gi|50513811|pdb|1TVF|B Chain B, Crystal Structure Of Penicillin-Binding Protein 4 (Pbp4)
           From Staphylococcus Aureus
          Length = 369

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 30/219 (13%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTYFTTEQ 130
           PAS+TK+MT+Y+  E +   +L L+  + ++       T    + +KLY  +   +T   
Sbjct: 59  PASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQ--VWTIAD 116

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------ 184
            +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT + N +G  +      
Sbjct: 117 LLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRSF 176

Query: 185 -----KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLN 232
                K+Q   +TTARD AIL + + K  P+   +   ++       +T    N +    
Sbjct: 177 APTKYKDQERTVTTARDYAILDLHVIKETPKILDF--TKQLAPTTHAVTYYTFNFSLEGA 234

Query: 233 KMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           KM     DG+KTG +  + +N   + +     I  V+MG
Sbjct: 235 KMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMG 273


>gi|295116026|emb|CBL36873.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
           SM4/1]
          Length = 528

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 111/256 (43%), Gaps = 41/256 (16%)

Query: 50  AKPKYSS---------IVIDVNKNQM---TGFKQDEPRYPASLTKMMTLYIIFEYLQSKK 97
           A P++ S         IVID +   +    G     P  PAS+ K++T  ++ E      
Sbjct: 29  AAPEWPSDTGIMADIGIVIDADSGAVLFGQGIHNQSP--PASIAKLLTALVVVE-----N 81

Query: 98  LHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             L+  +  S  A     + + +K  ++E    +    +  L+ +S+N  + A  E ++G
Sbjct: 82  SSLDDMVTFSHDAVYNVESGSGNKKNIEEGDVLSVRDCLYLLLLQSSNQAANALAEHVAG 141

Query: 154 SEKKFAILMSNKAKKIG-MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           S   F  +M+ K  ++G + +T + N SGL+D  Q  +A D A++      N  Q Y+  
Sbjct: 142 SRDAFVEMMNEKVSELGCVDDTHFANPSGLNDDTQHVSAYDMALIAKAAFDN-QQVYEIA 200

Query: 213 SIRKFRYRNRI-------ITNHNKLLNKMHNIDGI--------KTGYTRNSGFNIVTSLR 257
           S + ++    I        TN ++L+        +        KTGYT  +G  +VT   
Sbjct: 201 STKSYKLPATINNPNGVTCTNEHRLIITEDETSELYYPAAKAGKTGYTSLAGNTLVTCAE 260

Query: 258 YKDDPIVAVVM-GMPT 272
                +++V++ G P+
Sbjct: 261 EDGRCLISVILKGQPS 276


>gi|60101256|gb|AAX13706.1| penicillin-binding protein 4 [Staphylococcus aureus]
          Length = 431

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 30/219 (13%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTYFTTEQ 130
           PAS+TK+MT+Y+  E +   +L L+  + ++       T    + +KLY  +   +T   
Sbjct: 73  PASMTKLMTMYLTLEAVNKGQLSLDDTVRMTNKEYIMSTLPELSNTKLYPGQ--VWTIAD 130

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------ 184
            +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT + N +G  +      
Sbjct: 131 LLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRTF 190

Query: 185 -----KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLN 232
                K+Q   +TTARD AIL + + K  P+   +   ++       +T    N +    
Sbjct: 191 APTKYKDQERTVTTARDYAILDLRVIKETPKILDF--TKQLAPTTHAVTYYTFNFSLEGA 248

Query: 233 KMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           KM     DG+KTG +  + +N   + +     I  V+MG
Sbjct: 249 KMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMG 287


>gi|238854687|ref|ZP_04645017.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           jensenii 269-3]
 gi|282932922|ref|ZP_06338319.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           jensenii 208-1]
 gi|238832477|gb|EEQ24784.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           jensenii 269-3]
 gi|281302957|gb|EFA95162.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           jensenii 208-1]
          Length = 395

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 39/228 (17%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGIL 133
           ASLTK++TL +I E +   KL  + +I +SK  A      + S + L     +T    I 
Sbjct: 65  ASLTKILTLAVIMEDIHKHKLDWDQEIQISKDVAKVADDWHFSNVPLVYNERYTVRSLIE 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           +++  SA+  + A     +GS   F   M   AK+ G++N    N  GL           
Sbjct: 125 SMMIVSADGSTEALALADAGSVAAFNYKMKVVAKRAGVKNPEIYNMIGLSNGELGDLKLP 184

Query: 184 --DKNQIT--TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNI-- 237
             D NQ    +A+D A++   L   +P+     +I K +Y N  I   N++  KM NI  
Sbjct: 185 KIDDNQENQFSAKDMALVSKYLIDKYPE---VLNITKTKYANFKIRQDNEM--KMENIIY 239

Query: 238 --------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
                         DG+KTG T  +G+  V +  + +  ++ VV+ +P
Sbjct: 240 MLEGMGYGPKKGTMDGLKTGKTDAAGYCYVGTGTFDNRRVITVVLDVP 287


>gi|260663920|ref|ZP_05864773.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus jensenii
           SJ-7A-US]
 gi|260561806|gb|EEX27775.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus jensenii
           SJ-7A-US]
          Length = 397

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 39/228 (17%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGIL 133
           ASLTK++TL +I E +   KL  + +I +SK  A      + S + L     +T    I 
Sbjct: 67  ASLTKILTLAVIMEDIHKHKLDWDQEIQISKDVAKVADDWHFSNVPLVYNERYTVRSLIE 126

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           +++  SA+  + A     +GS   F   M   AK+ G++N    N  GL           
Sbjct: 127 SMMIVSADGSTEALALADAGSVAAFNYKMKVVAKRAGVKNPEIYNMIGLSNGELGDLKLP 186

Query: 184 --DKNQIT--TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNI-- 237
             D NQ    +A+D A++   L   +P+     +I K +Y N  I   N++  KM NI  
Sbjct: 187 KIDDNQENQFSAKDMALVSKYLIDKYPE---VLNITKTKYANFKIRQDNEM--KMENIIY 241

Query: 238 --------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
                         DG+KTG T  +G+  V +  + +  ++ VV+ +P
Sbjct: 242 MLEGMGYGPKKGTMDGLKTGKTDAAGYCYVGTGTFDNRRVITVVLDVP 289


>gi|229816443|ref|ZP_04446744.1| hypothetical protein COLINT_03496 [Collinsella intestinalis DSM
           13280]
 gi|229807985|gb|EEP43786.1| hypothetical protein COLINT_03496 [Collinsella intestinalis DSM
           13280]
          Length = 449

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 89/209 (42%), Gaps = 30/209 (14%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE 129
           + D P   AS TK+MT  +  ++    +      + V   AAT   S + LKE    T E
Sbjct: 74  EADSPIKIASTTKVMTALVALDHCDPSE-----TLTVDHAAATVGESCVGLKEGDTLTLE 128

Query: 130 QGILALITRSANDVSTAFGEFISG-----SEKKFAIL---MSNKAKKIGMQNTIYKNASG 181
           Q +  L+  S NDV+TA    + G     S   +      M+++A ++G  +T+++N  G
Sbjct: 129 QALTGLMVMSGNDVATAIATHVGGKIDPASADPYGTFIKAMNDRAAQLGCTDTLFENPHG 188

Query: 182 LHDKNQI----TTARDQAILGILLRKNFPQYYKYFSIRKF----------RYRNRIITNH 227
           L     +    +TA D  +  I       + ++ F+                R+  +T  
Sbjct: 189 LDFGAWVGNLHSTAHD--VTRIWAEAWHNEAFRSFACSDATEMHVTSADGSARSLPLTVR 246

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           NK+L +  N+ G KTG T  +G   V + 
Sbjct: 247 NKILGRDGNLGG-KTGSTYEAGECFVCTF 274


>gi|313472221|ref|ZP_07812713.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
           1153]
 gi|313449097|gb|EEQ68608.2| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
           1153]
          Length = 313

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 39/228 (17%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGIL 133
           ASLTK++TL +I E +   KL  + +I +SK  A      + S + L     +T    I 
Sbjct: 22  ASLTKILTLAVIMEDIHKHKLDWDQEIQISKDVAKVADDWHFSNVPLVYNERYTVRSLIE 81

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           +++  SA+  + A     +GS   F   M   AK+ G++N    N  GL           
Sbjct: 82  SMMIVSADGSTEALALADAGSVAAFNYKMKVVAKRAGVKNPEIYNMIGLSNGELGDLKLP 141

Query: 184 --DKNQIT--TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNI-- 237
             D NQ    +A+D A++   L   +P+     +I K +Y N  I   N++  KM NI  
Sbjct: 142 KIDDNQENQFSAKDMALVSKYLIDKYPE---VLNITKTKYANFKIRQDNEM--KMENIIY 196

Query: 238 --------------DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
                         DG+KTG T  +G+  V +  + +  ++ VV+ +P
Sbjct: 197 MLEGMGYGPKKGTMDGLKTGKTDAAGYCYVGTGTFDNRRVITVVLDVP 244


>gi|239942888|ref|ZP_04694825.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           roseosporus NRRL 15998]
 gi|239989348|ref|ZP_04710012.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           roseosporus NRRL 11379]
 gi|291446361|ref|ZP_06585751.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291349308|gb|EFE76212.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 320

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 108/239 (45%), Gaps = 19/239 (7%)

Query: 44  MASELH-AKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLN 101
           +A  LH   P+     + V      G + ++   P AS+TK+MT Y+I +    +     
Sbjct: 50  LARSLHLPWPREGQASVAVEGIGSLGTRGEQKPVPIASVTKVMTAYVILKDHPMRAGAPG 109

Query: 102 TQIPVSKTAATQNPSKL-----YLKEKTYFTTEQGILALI-TRSANDVSTAFGEFISGSE 155
             +   + AA ++ S +      L  + Y  T++ +L L+   S N+V+     + +G E
Sbjct: 110 ATVVADQRAADESYSSVETTAPVLAGREY--TQRRLLELMMVPSGNNVARLLARWDAGDE 167

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           K F   M+  A  +GM+ T Y   SG+    + +TA DQ  L     K+ P + +  +  
Sbjct: 168 KAFVAKMNRTAAGLGMRATTYTGVSGMETSTR-STAADQLALARAAMKD-PAFRQIVATA 225

Query: 216 KFRYRNRIIT--NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK----DDPIVAVVM 268
                   +T  N NKLL     + G+KTG +  +G N+V + R K    D  ++ VV+
Sbjct: 226 SVTAPGAGVTFRNTNKLLGH-DGVIGLKTGSSTPAGGNLVWATRQKVAGADRLVLGVVL 283


>gi|324989891|gb|EGC21833.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK353]
          Length = 409

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 33/229 (14%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFTTE 129
           P    S+T ++T+Y+++E +    L  +T + +S  A   T NP  S + L+ K Y   +
Sbjct: 37  PIEVGSITNLLTIYLVYEAIDRGDLTADTYVDISDYAYNLTSNPNISNVPLEAKRY-KVK 95

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH------ 183
             I A +  S+N  + A  E + GSE+ F  +M  K K+ G+++    N++GL+      
Sbjct: 96  DLIAASLMSSSNSATIALAEKVGGSEENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEY 155

Query: 184 ------------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
                             D     +A D A++   L  +FPQ     S    +     + 
Sbjct: 156 ATEETEYSASASTAKKSKDTENKFSAYDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLE 215

Query: 226 NHNKLLNKMHN----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           N+N +L    N    +DG+K G +   G + V +       ++ VV+ +
Sbjct: 216 NYNFMLENQSNFRSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVLDV 264


>gi|291532121|emb|CBK97706.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum 70/3]
          Length = 349

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 93/201 (46%), Gaps = 31/201 (15%)

Query: 76  YPASLTKMMTLYIIFEYLQSK-KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           +PAS TK++T     EY   + + ++ +++ +      Q+ S  ++ E +     + + A
Sbjct: 109 FPASTTKILTALTAIEYTAPEYEYYVGSELGL----VAQDSSMSWIAEGSSLCRNEILTA 164

Query: 135 LITRSANDVSTA---------FGEFISGSEKK--FAILMSNKAKKIGMQNTIYKNASGLH 183
           ++  S ND +           +G+ IS ++    FA+LM++ AKK+G +NT +    G H
Sbjct: 165 MLAPSGNDAAYTIAVNVARKLYGDDISDNDAVAYFAVLMNDYAKKLGAKNTHFTVPDGYH 224

Query: 184 DKNQITTARD-----------QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           D    TTA D           Q I  I  +     Y +  ++  +   N+++T+      
Sbjct: 225 DDEHYTTAEDMLKFAIAATQSQTICDITCQPLAIVYDEQGNVHSWDNGNKLLTD----TT 280

Query: 233 KMHNIDGIKTGYTRNSGFNIV 253
             + + G+KTG+T  +GF  +
Sbjct: 281 IPYEVYGMKTGFTDEAGFCFI 301


>gi|227544057|ref|ZP_03974106.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
           CF48-3A]
 gi|300908323|ref|ZP_07125788.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
           SD2112]
 gi|68160782|gb|AAY86837.1| lr0959 [Lactobacillus reuteri]
 gi|227185963|gb|EEI66034.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
           CF48-3A]
 gi|300894570|gb|EFK87927.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
           SD2112]
          Length = 414

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 122/274 (44%), Gaps = 37/274 (13%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMT 85
           +I L G  +F  +   + A ++ A+  Y+   ID    Q+   K    RYP AS+ K++T
Sbjct: 19  SICLNGLGMFEKVHADTAAFQMDARAAYA---IDAESGQVLYQKNATKRYPIASVIKILT 75

Query: 86  LYIIFEYLQSKKLHLNTQI----PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           L +I + +++  L  + +I     V+K A   + S + L     +T  Q + +++  SA+
Sbjct: 76  LGVILQDIRNHHLKWDQKIKITPAVAKMADDWHFSNVPLMNGEEYTVRQLVDSMMLVSAD 135

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HDKNQ 187
             + A     +GS   F   M   AKK G+ +    N  GL               D   
Sbjct: 136 GSTEALALADAGSTAAFNKKMMAFAKKAGVTDIKIYNMIGLPNGDLGKHKLKGVDKDAEN 195

Query: 188 ITTARDQAILGILLRKNFP-------QYYKYFSIRKFRYRNRIITNHNKLLN------KM 234
           + +A+D A++   L +N+P       Q +  F + K   +  ++TN N LL       K 
Sbjct: 196 LLSAKDVALISKYLVENYPETLDITKQKFANFDVTK--DQQYLMTNVNALLPQNGFAPKD 253

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             IDG+KTG T  +G  IV++  +    I+ V +
Sbjct: 254 GEIDGLKTGNTDRAGKCIVSTGTFTGRRIILVAL 287


>gi|291087522|ref|ZP_06571984.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
 gi|291074901|gb|EFE12265.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
          Length = 489

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 106/241 (43%), Gaps = 32/241 (13%)

Query: 56  SIVIDVNKNQM---TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA- 111
            IVID +   +    G     P  PAS+ K++T  ++ E        L+  +  S  A  
Sbjct: 5   GIVIDADSGAVLFGQGIHNQSP--PASIAKLLTALVVVE-----NSSLDDMVTFSHDAVY 57

Query: 112 ---TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
              + + +K  ++E    +    +  L+ +S+N  + A  E ++GS   F  +M+ K  +
Sbjct: 58  NVESGSGNKKNIEEGDVLSVRDCLYLLLLQSSNQAANALAEHVAGSRDAFVEMMNEKVSE 117

Query: 169 IG-MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI---- 223
           +G + +T + N SGL+D  Q  +A D A++      N  Q Y+  S + ++    I    
Sbjct: 118 LGCVDDTHFANPSGLNDDTQHVSAYDMALIAKAAFDN-QQVYEIASTKSYKLPATINNPN 176

Query: 224 ---ITNHNKLLNKMHNIDGI--------KTGYTRNSGFNIVTSLRYKDDPIVAVVM-GMP 271
               TN ++L+        +        KTGYT  +G  +VT        +++V++ G P
Sbjct: 177 GVTCTNEHRLIITEDETSELYYPAAKAGKTGYTSLAGNTLVTCAEEDGRCLISVILKGQP 236

Query: 272 T 272
           +
Sbjct: 237 S 237


>gi|324992344|gb|EGC24265.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK405]
          Length = 409

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 33/229 (14%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFTTE 129
           P    S+T ++T+Y+++E +    L  +T + +S  A   T NP  S + L+ K Y   +
Sbjct: 37  PIEVGSITNLLTVYLVYEAIDRGDLTADTYVDISDYAYTLTSNPNISNVPLEAKRYKAKD 96

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH------ 183
             I A +  S+N  + A  E + GSE+ F  +M  K K+ G+++    N++GL+      
Sbjct: 97  L-IAASLMSSSNSATIALAEKVGGSEENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEY 155

Query: 184 ------------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
                             D     +A D A++   L  +FPQ     S    +     + 
Sbjct: 156 ATEETEYSTSASTAKKSKDTENKFSAYDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLE 215

Query: 226 NHNKLLNKMHN----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           N+N +L    N    +DG+K G +   G + V +       ++ VV+ +
Sbjct: 216 NYNFMLENQSNFRSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVLDV 264


>gi|315653180|ref|ZP_07906105.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners ATCC
           55195]
 gi|315489545|gb|EFU79182.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners ATCC
           55195]
          Length = 429

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 115/244 (47%), Gaps = 29/244 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK--TAA 111
           ++I+ D+   Q+   K  + + P AS++K++T+Y+  + + + K+   T++  S+   A 
Sbjct: 68  AAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTVYLTLKAINAGKISWQTKVMPSREAIAV 127

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           ++NP  S + L+    +T +Q   A + +SAN  +      ++GS KKF  +M  +    
Sbjct: 128 SKNPEYSNVPLQLGHQYTIKQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRKQLLDW 187

Query: 170 GMQNTIYKNASGL--------HDKNQITTARDQ---AILGILLRK---NFPQYYKYFSIR 215
            +        SGL         D N+   A ++   + +GIL++     FPQ      I 
Sbjct: 188 HISQAQIVTPSGLPNFTLGRDADSNKNADAENELSASDMGILIKHLLLEFPQVLDTTRIS 247

Query: 216 KFRY----RNRIITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           K  +    +   + N N +L      N+ + +DG+KTG T  +G  + ++L      I+ 
Sbjct: 248 KLDFLDGRKTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGACLASTLVKNGRRIIT 307

Query: 266 VVMG 269
           V++G
Sbjct: 308 VIIG 311


>gi|182438052|ref|YP_001825771.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178466568|dbj|BAG21088.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 914

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 98/217 (45%), Gaps = 15/217 (6%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA--TQNP--SKLYLKEKTYFTTEQGIL 133
           AS+ K+MT ++I +    K       I V + A   +Q P  S   L +    T  Q + 
Sbjct: 589 ASVAKVMTAHVILQEHPLKGDEEGETITVDQKAEDESQRPDESTAPLTKGQKLTQRQMLQ 648

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  S N+ +     + +GSE  F   M++ AK +GM  + Y + SGL  K  ++TA D
Sbjct: 649 LLMIPSGNNAARLLARWDAGSEDAFIDKMNDAAKDLGMTGSTYTDPSGLE-KTTVSTATD 707

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYR---NRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           Q  L   + +N   + K   + +   +    +I  N+N LL     + GIKTG +  +G 
Sbjct: 708 QLKLAQAVMRNE-VFRKIVDMPEVEIKGIDGKIYNNNNLLL--QPGVSGIKTGSSTPAGG 764

Query: 251 NIVTSLRYKDDP----IVAVVMGMPTSQERDQKALEL 283
           N++ S   K D     I   VMG      R   +LEL
Sbjct: 765 NLLWSANTKVDGKLLWIYGAVMGQQAGTGRVYDSLEL 801


>gi|326778695|ref|ZP_08237960.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           cf. griseus XylebKG-1]
 gi|326659028|gb|EGE43874.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           cf. griseus XylebKG-1]
          Length = 890

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 98/217 (45%), Gaps = 15/217 (6%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA--TQNP--SKLYLKEKTYFTTEQGIL 133
           AS+ K+MT ++I +    K       I V + A   +Q P  S   L +    T  Q + 
Sbjct: 565 ASVAKVMTAHVILQEHPLKGDEEGETITVDQKAEDESQRPDESTAPLTKGQKLTQRQMLQ 624

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  S N+ +     + +GSE  F   M++ AK +GM  + Y + SGL  K  ++TA D
Sbjct: 625 LLMIPSGNNAARLLARWDAGSEDAFIDKMNDAAKDLGMTGSTYTDPSGLE-KTTVSTATD 683

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYR---NRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           Q  L   + +N   + K   + +   +    +I  N+N LL     + GIKTG +  +G 
Sbjct: 684 QLKLAQAVMRNE-VFRKIVDMPEVEIKGIDGKIYNNNNLLL--QPGVSGIKTGSSTPAGG 740

Query: 251 NIVTSLRYKDDP----IVAVVMGMPTSQERDQKALEL 283
           N++ S   K D     I   VMG      R   +LEL
Sbjct: 741 NLLWSANTKVDGKLLWIYGAVMGQQAGTGRVYDSLEL 777


>gi|325686780|gb|EGD28805.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK72]
          Length = 409

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 33/229 (14%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFTTE 129
           P    S+T ++T+Y+++E +    L  +T + +S  A   T NP  S + L+ K Y   +
Sbjct: 37  PIEVGSITNLLTVYLVYEAIDRGDLTADTYVDISDYAYNLTSNPNISNVPLEAKRY-KVK 95

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH------ 183
             I A +  S+N  + A  E + GSE+ F  +M  K K+ G+++    N++GL+      
Sbjct: 96  DLIAASLMSSSNSATIALAEKVGGSEENFVEMMKAKLKEWGIKDATIVNSTGLNTLLLEY 155

Query: 184 ------------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
                             D     +A D A++   L  +FPQ     S    +     + 
Sbjct: 156 ATEETEYSASASTSKKSKDTENKFSAYDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLE 215

Query: 226 NHNKLLNKMHN----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           N+N +L    N    +DG+K G +   G + V +       ++ VV+ +
Sbjct: 216 NYNFMLENQSNFRSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVLDV 264


>gi|253731263|ref|ZP_04865428.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253725004|gb|EES93733.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
          Length = 431

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 30/219 (13%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTYFTTEQ 130
           PAS+TK+MT+Y+  E +   +L L+  + ++       T    + +KLY  +   +T   
Sbjct: 73  PASMTKLMTMYLTLEAVNKGQLSLDDTVRMTNKEYIMSTLPELSNTKLYPGQ--VWTIAD 130

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------ 184
            +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT + N +G  +      
Sbjct: 131 LLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRSF 190

Query: 185 -----KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLN 232
                K+Q   +TTARD AIL + + K  P+   +   ++       +T    N +    
Sbjct: 191 APTKYKDQERTVTTARDYAILDLHVIKETPKILDF--TKQLAPTTHAVTYYTFNFSLEGA 248

Query: 233 KMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           KM     DG+KTG +  + +N   + +     I  V+MG
Sbjct: 249 KMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMG 287


>gi|312875038|ref|ZP_07735056.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF
           2053A-b]
 gi|311089433|gb|EFQ47859.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF
           2053A-b]
          Length = 425

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 109/244 (44%), Gaps = 29/244 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK--TAA 111
           ++I+ D+   Q+   K  + + P AS++K++T+Y+  + + + K+   T++  S+   A 
Sbjct: 64  AAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAINAGKISWQTKVMPSREAIAV 123

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           ++NP  S + L+    +T +Q   A + +SAN  +      ++GS KKF  +M  +    
Sbjct: 124 SKNPEYSNVPLQLGHQYTIKQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRKQLLDW 183

Query: 170 GMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
            +        SGL               D     +A D  IL   L   FPQ      I 
Sbjct: 184 HISQAQIVTPSGLPNFTLGRDADSTKNADAENELSASDMGILIKHLLLEFPQVLDTTRIS 243

Query: 216 KFRYRNR----IITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           K  + +      + N N +L      N+ + +DG+KTG T  +G  + ++L      IV 
Sbjct: 244 KLNFPDGHNTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGACLASTLVKNGRRIVT 303

Query: 266 VVMG 269
           V++G
Sbjct: 304 VIIG 307


>gi|332974550|gb|EGK11470.1| D-alanyl-D-alanine endopeptidase PbpG [Kingella kingae ATCC 23330]
          Length = 313

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 116/245 (47%), Gaps = 32/245 (13%)

Query: 55  SSIVIDVNKNQMTGFKQ---DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           S+++++ N  Q+  F Q   D  R  AS++K+M   ++ +     +L +N +I +++   
Sbjct: 74  SALIMNANTGQI--FYQKNMDNVRSIASISKLMAAMVVLD----ARLDMNQRITITEAEI 127

Query: 112 TQ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            +     S+L +   T  T  Q +   +  S N    A G    G    F   M+ KA+ 
Sbjct: 128 DRLKGTGSRLSIG--TTLTRGQMLHLGLMSSENRAIHALGRTYPGGMSAFVQAMNAKARS 185

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK---------YFSIRKF-R 218
           +GM N+ +   +GL  +N ++TAR+ +++ +     +PQ  +         Y S  KF +
Sbjct: 186 LGMMNSRFYEPTGLDPRN-VSTARELSMM-VRAASQYPQIRQLSTAQSGEAYTSTGKFEQ 243

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-- 276
           Y+N  I     +     NI   KTGY R +G ++V   +   +P++ VV+G  T+  R  
Sbjct: 244 YKNSNIF----VREGNWNITVQKTGYIREAGRSMVMQTQMGREPVIIVVLGSQTTTTRAN 299

Query: 277 DQKAL 281
           D +AL
Sbjct: 300 DARAL 304


>gi|295101851|emb|CBK99396.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
           L2-6]
          Length = 429

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 91/215 (42%), Gaps = 19/215 (8%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-----KTAATQNPSKLYLKEKTYF 126
           D+ RY ASLTKMMT  +  E    K ++    IP S     K     N S + L+     
Sbjct: 61  DQQRYIASLTKMMTALLFLE--SGKDMNAEITIPTSLTQEFKDIQNANGSTMNLRIGETV 118

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
                +  L+  SAND ++     +SG +   F   M+ +AK++G  +T +    GL+D 
Sbjct: 119 RRIDLLYGLLVASANDAASVIASDVSGGDLTAFVAQMNARAKELGCTDTTFSCVHGLYDY 178

Query: 186 NQITTARDQAILGILLRKN--FPQYYKYFS----IRKFRYRNRIITNHNKLLNKMHN--- 236
             ++TA D A +      N  + Q     +            R I + N +L+  +    
Sbjct: 179 GNVSTAEDLAKIAAACYANETYMQAANTLTYTLPATNLHQNERTIKSTNLMLDPEYAYHR 238

Query: 237 --IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
             + G+KTG+T  +G   VT  +        VV+G
Sbjct: 239 DYVRGMKTGFTTLAGRCFVTFAQQDGHTYGLVVLG 273


>gi|94991764|ref|YP_599863.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS2096]
 gi|94545272|gb|ABF35319.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS2096]
          Length = 231

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 27/171 (15%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           SE++ +PK SSIV+D N + +      D PR PAS++KM TLYI+FE L   K+ ++T I
Sbjct: 38  SEVN-RPK-SSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTI 95

Query: 105 PVSKTAATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KK 157
             + T   Q  + +Y      +     +     I      S+N  +     ++S ++   
Sbjct: 96  --TATPTDQAIANIYEISNNNIVAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASA 153

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLH---------------DKNQITTARD 193
           F   ++  AK++GM NT + NASG                   + ITTARD
Sbjct: 154 FIDRINATAKQLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARD 204


>gi|291439005|ref|ZP_06578395.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
           14672]
 gi|291341900|gb|EFE68856.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
           14672]
          Length = 853

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 91/184 (49%), Gaps = 14/184 (7%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIP-------VSKTAATQNPSKLYLKEKTYFTTEQ 130
           AS+ K+MT Y++   L+   L    + P         K +   + S + +      +  +
Sbjct: 530 ASVAKVMTAYLV---LRDHPLKSGAEGPMIKIDELAEKQSDAGDESTVDVTAGDEISQRE 586

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            I A++  SAN+V+     + +GSE+ F   M+  AK +GM +T Y + SGL++   ++T
Sbjct: 587 AIEAVLIASANNVARLLARWDAGSEEAFVEKMNEAAKDLGMTDTTYTDPSGLNNTT-VST 645

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKF-RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
           A DQ  L     +  P + +  ++  +  Y+ +   N N+L+   + + GIKTG T ++ 
Sbjct: 646 AVDQVKLAKAAMQQ-PVFREVAAMMSYDDYKGKNWPNWNQLVGS-NGVVGIKTGTTTSAL 703

Query: 250 FNIV 253
            N+V
Sbjct: 704 GNLV 707


>gi|116334394|ref|YP_795921.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367]
 gi|116099741|gb|ABJ64890.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367]
          Length = 392

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 104/239 (43%), Gaps = 26/239 (10%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK-----T 109
           +I +D    +    K      P AS++K+MTLY++ + +       N  +  S       
Sbjct: 130 AIALDYTTGKAVWSKSANTVRPIASVSKLMTLYLVLKKVDGSATKWNQVVDTSSKGLIAM 189

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
             +        K    +T ++   A +  S+N+ + A G++++GS  KF   M+ +AK  
Sbjct: 190 GKSSACGGFLFKTGHKYTVKELYDAALLDSSNNAAIALGKWVAGSNAKFIKQMNAQAKSW 249

Query: 170 GMQNTIYKNASGLHDKN-------------QITTARDQAILGILLRKNFPQYYKYFSIRK 216
            +    + +ASGL + +              + +A+D A++   L K++P+     ++  
Sbjct: 250 NLGKASFVSASGLENDDLKAFGYAYGSKNANMVSAKDVALIARHLIKDYPRILTDGAVGS 309

Query: 217 FRYRNRIITNHNKLLNKMH------NIDGIKTGYTRNSGFNIV-TSLRYKDDPIVAVVM 268
                ++  N+N LL           +DG+KTGYT  +G+  V T  +     ++ VV+
Sbjct: 310 KNVDGQLCYNYNNLLKGRKYYQSSLKVDGLKTGYTPLAGYCFVGTGQKSGKHRVITVVL 368


>gi|29839835|ref|NP_828941.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila caviae GPIC]
 gi|29834182|gb|AAP04819.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila caviae GPIC]
          Length = 433

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 16/174 (9%)

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           AL+  SAND +       SGS  +F   +++  K+IG  +T + N  GLH  N  TTARD
Sbjct: 132 ALLICSANDAANTLAMACSGSVSEFMKQLNSFLKEIGCADTHFNNPHGLHHPNHYTTARD 191

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYR--------NRIITNHNKLLNKMHN-----IDGI 240
              L  ++R+   +      IR   Y+         R++   NKL+            G 
Sbjct: 192 ---LTSIMREGLKEPLFRQVIRTTNYKMAATNLSQERVLNLTNKLILPGSTYYYPPALGG 248

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
           KTG T+++G N+V + +     I+ +  G PT  E  +  + L      +  L+
Sbjct: 249 KTGTTKDAGKNLVFAAKKHGRSIITIAAGYPTMGELYEDVIALCEGVFNEPVLR 302


>gi|303232329|ref|ZP_07319024.1| serine-type D-Ala-D-Ala carboxypeptidase [Atopobium vaginae
           PB189-T1-4]
 gi|302481586|gb|EFL44651.1| serine-type D-Ala-D-Ala carboxypeptidase [Atopobium vaginae
           PB189-T1-4]
          Length = 399

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 93/212 (43%), Gaps = 23/212 (10%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGI 132
           PASLTK+MT+Y   +Y+++    L+ + P+   +      +N S          T    +
Sbjct: 170 PASLTKIMTVYTALQYIRN----LDAKAPIDTASFAKLDDENASTAGFVAGEQTTFRDLL 225

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
              + RS  + + +     +GSE  F   M+  A+K+G+++T + N +GL D N ++TA 
Sbjct: 226 YGTLLRSGAECAISLAVNTAGSEDAFVAKMNKNAQKMGLRHTHFTNTTGLDDNNLMSTAH 285

Query: 193 D------QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM-------HNIDG 239
           +      QA+     RK F      +   K     + IT  + +L+ +         I G
Sbjct: 286 EIGQMLRQALTNETFRKIF--CTASYDSSKTDKHPKGITIKSTVLSHLTPDEQQGFTILG 343

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
            K+G T N+G    T +       + V MG P
Sbjct: 344 GKSGTTDNAGLCWATLVEKNKKHYIVVTMGAP 375


>gi|258423292|ref|ZP_05686183.1| penicillin-binding protein 4 [Staphylococcus aureus A9635]
 gi|257846353|gb|EEV70376.1| penicillin-binding protein 4 [Staphylococcus aureus A9635]
          Length = 431

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 30/219 (13%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTYFTTEQ 130
           PAS+TK+MT+Y+  E +   +L L+  + ++       T    + +KLY  +   +T   
Sbjct: 73  PASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQ--VWTIAD 130

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------ 184
            +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT + N +G  +      
Sbjct: 131 LLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRTF 190

Query: 185 -----KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLN 232
                K+Q   +TTARD AIL + + K  P+   +   ++       +T    N +    
Sbjct: 191 APTKYKDQERTVTTARDFAILDLHVIKETPKILDF--TKQLAPTTHAVTYYTFNFSLEGA 248

Query: 233 KMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           KM     DG+KTG +  + +N   + +     I  V+MG
Sbjct: 249 KMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMG 287


>gi|319937143|ref|ZP_08011550.1| hypothetical protein HMPREF9488_02385 [Coprobacillus sp. 29_1]
 gi|319807509|gb|EFW04102.1| hypothetical protein HMPREF9488_02385 [Coprobacillus sp. 29_1]
          Length = 406

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 89/193 (46%), Gaps = 6/193 (3%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE 129
           K +E  YPAS+TK++T+ +  +Y+   +  +  +    K    +  +   L      T E
Sbjct: 51  KSNEKIYPASMTKILTVSLALDYITDLQEVVTIKQADFKGVVEEGATVAGLFPGEKVTYE 110

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
             +   +  S  D   A    I G        M+ K  ++G+Q T + N +GLHD+   T
Sbjct: 111 DLLYGALLPSGADACQALARLIFGDVDHMVTAMNEKVIELGLQQTHFMNVTGLHDEKHYT 170

Query: 190 TARDQAIL--GILLRKNFPQYYKYFSIRKFRYRNRIITN-HNKLLNKMHN---IDGIKTG 243
           TA + A++    L  K F + ++  S +  +  ++ I++  N   NK  +   I+G K+G
Sbjct: 171 TAHEMALILNHALQNKEFVKVFEARSYKSSKGNHQWISSLQNAKDNKDMDVSLINGGKSG 230

Query: 244 YTRNSGFNIVTSL 256
           +T  +G    +++
Sbjct: 231 FTDEAGLTYASTM 243


>gi|239930641|ref|ZP_04687594.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
           14672]
          Length = 855

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 91/184 (49%), Gaps = 14/184 (7%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIP-------VSKTAATQNPSKLYLKEKTYFTTEQ 130
           AS+ K+MT Y++   L+   L    + P         K +   + S + +      +  +
Sbjct: 532 ASVAKVMTAYLV---LRDHPLKSGAEGPMIKIDELAEKQSDAGDESTVDVTAGDEISQRE 588

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            I A++  SAN+V+     + +GSE+ F   M+  AK +GM +T Y + SGL++   ++T
Sbjct: 589 AIEAVLIASANNVARLLARWDAGSEEAFVEKMNEAAKDLGMTDTTYTDPSGLNNTT-VST 647

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKF-RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
           A DQ  L     +  P + +  ++  +  Y+ +   N N+L+   + + GIKTG T ++ 
Sbjct: 648 AVDQVKLAKAAMQQ-PVFREVAAMMSYDDYKGKNWPNWNQLVGS-NGVVGIKTGTTTSAL 705

Query: 250 FNIV 253
            N+V
Sbjct: 706 GNLV 709


>gi|213417971|ref|ZP_03351051.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 113

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 6/97 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 15  DEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 74

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            +       +I +S ND   A  ++++GS++ F  LM
Sbjct: 75  VSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLM 111


>gi|170721278|ref|YP_001748966.1| D-alanyl-D-alanine endopeptidase [Pseudomonas putida W619]
 gi|169759281|gb|ACA72597.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pseudomonas
           putida W619]
          Length = 296

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 110/228 (48%), Gaps = 25/228 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+++ID+N N+       +   P AS+TK+MT  ++ +     KL ++  + ++      
Sbjct: 33  SALLIDLNTNKELYSSHADRVVPIASVTKLMTAMVVLD----AKLPMDEMLTMT---IAN 85

Query: 114 NP------SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
           NP      S++ L  +      + +L  +  S N  +T+      G    F   M+ KA+
Sbjct: 86  NPDMKGVYSRVRLGSQ--LNRRETLLITLMSSENRAATSLANHYPGGYPAFIKAMNAKAR 143

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRI 223
            +GM +T Y   +GL  +N +++ARD A L +  RK +P   +  + R+    FR  N  
Sbjct: 144 SLGMAHTRYVEPTGLSTQN-VSSARDLAKLLMASRK-YPMLSELSTTREKTVAFRKPNYT 201

Query: 224 IT--NHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +   N + L+NK + +I   KTG+T  +G  +V   R  + P+  V++
Sbjct: 202 LGFRNTDHLVNKSNWDIKLTKTGFTNEAGHCLVLLTRMDNRPVAMVIL 249


>gi|229135841|ref|ZP_04264610.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
 gi|228647630|gb|EEL03696.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
          Length = 301

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 80/145 (55%), Gaps = 8/145 (5%)

Query: 56  SIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQ 113
            I ID +  + + G ++ E  YPAS+ KMMT  ++ E ++      + +I V++ A  T+
Sbjct: 64  GITIDADTGEILYGKREGERSYPASIGKMMTTLLLLENVKE-----DEEITVTENAIKTE 118

Query: 114 NPSK-LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           + SK + L+       ++ +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G +
Sbjct: 119 SQSKKIKLRAGEKLKRDEALKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTK 178

Query: 173 NTIYKNASGLHDKNQITTARDQAIL 197
           +  +KNASG        +  D AI+
Sbjct: 179 HATFKNASGADALGNKVSPYDIAII 203


>gi|227500757|ref|ZP_03930806.1| D-alanyl-D-alanine carboxypeptidase [Anaerococcus tetradius ATCC
           35098]
 gi|227217062|gb|EEI82420.1| D-alanyl-D-alanine carboxypeptidase [Anaerococcus tetradius ATCC
           35098]
          Length = 291

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 92/236 (38%), Gaps = 21/236 (8%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFT 127
           DEP   ASLTK+MT  +  E++      L    P+       A   N S    +     T
Sbjct: 59  DEPLPMASLTKIMTALVSLEHITD----LGALAPIDYDAYMDAVNANASMAGFRANETTT 114

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
               +   I  S  +   +    +SGS   F  LM++KAK++ + NT Y NA G+ D+  
Sbjct: 115 YRDLLYGTILASGAEACDSLAINVSGSVDDFVRLMNDKAKELKLTNTSYANADGMDDEKN 174

Query: 188 ITTARDQAIL-----------GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN 236
             +ARD A+L            I  +K F               + I ++          
Sbjct: 175 YQSARDCAMLIKASLEDGNFRAIFTKKEFLSSPTNEHPDGLHIASTIFSHLKDYDENGFE 234

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD--QKALELITSFLEK 290
           I G K+G T N+G    T  +      + VVMG+  +   D     +    S+LEK
Sbjct: 235 IIGGKSGTTDNAGLCWATLAKKDGKEYIVVVMGVAFTNIDDLPDGHIRETLSYLEK 290


>gi|167586734|ref|ZP_02379122.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ubonensis Bu]
          Length = 366

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 108/247 (43%), Gaps = 32/247 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N  +    K      P AS+TK+MT  ++ +   
Sbjct: 95  VGQAFGLHDTPDALALRSSVAYVVDQNSGEPLFDKNSHAVVPIASITKLMTAMVVLD--- 151

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             KL L  QI V+      +  +   L   +  + E  +   +  S N  + +   +  G
Sbjct: 152 -SKLPLTDQIEVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAASMSRYYPG 210

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM +T ++N++GL  +N +++ARD       L K     Y+Y  
Sbjct: 211 GRPAFVAAMNAKAKALGMADTHFENSTGLSSQN-VSSARD-------LVKMVNAAYQYPL 262

Query: 214 IRKFRY----------RNRIITNHNKLLNKMHNID-GI-KTGYTRNSGFNIVTSLRYKDD 261
           IRKF            RN    + N L+   ++ D G+ KTG+   +G  +V      D 
Sbjct: 263 IRKFSTDRSYEVYTGKRNLAYNSTNALIRGNNSWDIGLQKTGFINEAGECLVMQATIHDR 322

Query: 262 PIVAVVM 268
           P+V V++
Sbjct: 323 PMVIVLL 329


>gi|283769805|ref|ZP_06342697.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
           5/6) [Staphylococcus aureus subsp. aureus H19]
 gi|283459952|gb|EFC07042.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
           5/6) [Staphylococcus aureus subsp. aureus H19]
          Length = 431

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 30/219 (13%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTYFTTEQ 130
           PAS+TK+MT+Y+  E +   +L L+  + ++       T    + +KLY  +   +T   
Sbjct: 73  PASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQ--VWTIAD 130

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------ 184
            +   ++ S+N  +      +S +   F  LM+NKAK IGM+NT + N +G  +      
Sbjct: 131 LLQITVSNSSNAAALILAMKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRTF 190

Query: 185 -----KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLN 232
                K+Q   +TTARD AIL + + K  P+   +   ++       +T    N +    
Sbjct: 191 APTKYKDQERTVTTARDYAILDLHVIKETPKILDF--TKQLAPTTHAVTYYTFNFSLEGA 248

Query: 233 KMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           KM     DG+KTG +  + +N   + +     I  V+MG
Sbjct: 249 KMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMG 287


>gi|325277519|ref|ZP_08143117.1| D-alanyl-D-alanine endopeptidase [Pseudomonas sp. TJI-51]
 gi|324097346|gb|EGB95594.1| D-alanyl-D-alanine endopeptidase [Pseudomonas sp. TJI-51]
          Length = 312

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 109/226 (48%), Gaps = 21/226 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+++ID+N NQ       +   P AS+TK+MT  ++ +     KL ++  + ++      
Sbjct: 49  SALLIDLNTNQELYSNHADRVVPIASVTKLMTAMVVLD----AKLPMDEMLTMT---IAN 101

Query: 114 NPS--KLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           NP    +Y  ++  +     + +L  +  S N  + +      G    F   M+ KA+ +
Sbjct: 102 NPEMKGVYSRVRPGSQLNRRETLLITLMSSENRAANSLANAYPGGYPAFIKAMNAKARSL 161

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT 225
           GM +T Y   +GL  +N ++TARD + L +  RK +P   +  + R+    FR  N  + 
Sbjct: 162 GMAHTRYVEPTGLSTQN-VSTARDLSKLLMASRK-YPMLSELSTTREKTVAFRKPNYTLG 219

Query: 226 --NHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             N + L+NK + +I   KTG+T  +G  +V   R  + P+  V++
Sbjct: 220 FRNTDHLVNKSNWDIKLTKTGFTNEAGHCLVLLTRMDNRPVAMVIL 265


>gi|154502813|ref|ZP_02039873.1| hypothetical protein RUMGNA_00627 [Ruminococcus gnavus ATCC 29149]
 gi|153796696|gb|EDN79116.1| hypothetical protein RUMGNA_00627 [Ruminococcus gnavus ATCC 29149]
          Length = 313

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 100/226 (44%), Gaps = 28/226 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----T 109
            SI+ ++N  Q+   +  + ++P AS+TK+MT+ + +E +++  L L +   V++     
Sbjct: 69  GSIITEINTGQILWQENAQKQWPPASMTKLMTILLAYEEIKAGNLELESTAEVNERYTDI 128

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A     S   ++    +T  + +  +I  S+   +    + +     +F   M+ KA+++
Sbjct: 129 AGRYALSNNKMQPGASYTVAELMDLIIVPSSAAATYMLADMVESDPDRFVERMNQKAQEL 188

Query: 170 GMQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQY-----YK 210
           GM NT Y N  G+               D + ITT  D A+L   L K +P       Y 
Sbjct: 189 GMVNTKYFNCVGVTNNLLQPYHPVSQPLDGDNITTPEDYAMLCTYLIKTYPDILNHTKYP 248

Query: 211 YFSIRKFRYRNRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNI 252
             ++++        T++   L      +   DG+KTG +  +GF +
Sbjct: 249 QITVKEGTPYEEHFTSYQISLEGAKYGLEGTDGLKTGSSDTAGFKL 294


>gi|154504396|ref|ZP_02041134.1| hypothetical protein RUMGNA_01900 [Ruminococcus gnavus ATCC 29149]
 gi|153795325|gb|EDN77745.1| hypothetical protein RUMGNA_01900 [Ruminococcus gnavus ATCC 29149]
          Length = 345

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 8/143 (5%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA--TQNPSKLYLKEKTYFTTEQ 130
           EP YPAS TK+MT Y+  +Y      +L+  + VS+ A    ++     L+     +   
Sbjct: 115 EPLYPASTTKIMTAYVALKYG-----NLDDIVTVSERATDFAEDEQVCGLQAGDQLSLRD 169

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  L+  S ND + A  E +SGS + F   M+ +A+ +G   T + N  GL +++  TT
Sbjct: 170 LLNGLLLYSGNDCAVAIAEHVSGSVEAFVDKMNEEARNLGATGTHFVNPHGLQNEDHYTT 229

Query: 191 ARDQAILGILLRKNFPQYYKYFS 213
           A D  ++     +N PQ+ +  S
Sbjct: 230 AYDLYLMFNACLQN-PQFVEMIS 251


>gi|282915977|ref|ZP_06323742.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
           aureus D139]
 gi|282320273|gb|EFB50618.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
           aureus D139]
          Length = 431

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 30/219 (13%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTYFTTEQ 130
           PAS+TK+MT+Y+  E +   +L L+  + ++       T    + +KLY  +   +T   
Sbjct: 73  PASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQ--VWTIAD 130

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------ 184
            +   ++ S+N  +      +S +   F  LM+NKAK IGM+NT + N +G  +      
Sbjct: 131 LLQITVSNSSNAAALILAMKVSKNTSNFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRTF 190

Query: 185 -----KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLN 232
                K+Q   +TTARD AIL + + K  P+   +   ++       +T    N +    
Sbjct: 191 APTKYKDQERTVTTARDYAILDLHVIKETPKILDF--TKQLAPTTHAVTYYTFNFSLEGA 248

Query: 233 KMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           KM     DG+KTG +  + +N   + +     I  V+MG
Sbjct: 249 KMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMG 287


>gi|149196127|ref|ZP_01873183.1| D-alanyl-D-alanine carboxypeptidase [Lentisphaera araneosa
           HTCC2155]
 gi|149140974|gb|EDM29371.1| D-alanyl-D-alanine carboxypeptidase [Lentisphaera araneosa
           HTCC2155]
          Length = 337

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 105/214 (49%), Gaps = 15/214 (7%)

Query: 78  ASLTKMMTLYIIFEYLQ-SKKLHLNTQIPVSKTAATQNPSKLYLK-EKTYFTTEQGILAL 135
           ASLTK +T+  +  +++ + +  L  Q+ +SK++   + S    K  K   + E+ +++ 
Sbjct: 111 ASLTKCLTVLTVLNHIKKNPEYSLLDQVLISKSSMKTSSSSFLRKYPKDTISIEELLISA 170

Query: 136 ITRSANDVSTAFGE-FISGSEKKFAILMSNKAKKIGMQNTIYKNASGL---HDKNQITTA 191
           + +SAND      E F  G  K F  +M+ +A+++GM  T   NA GL    +K ++   
Sbjct: 171 MVKSANDSCQLIAEHFGKGDPKVFIAMMNKQAQELGMTQTRMSNAHGLPFNREKPELDNH 230

Query: 192 RDQAILGILLRK---NFPQYYKYFSIRKF-----RYRNRIITNHNKLLNKMHNIDGIKTG 243
              + L  L+RK   ++P   K+ S R+       ++   I N N LL  +  ++G KTG
Sbjct: 231 SSMSDLLHLVRKSINDYPIILKWTSKREALLPVNSHKATKIGNTNPLL-AVKGVNGYKTG 289

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           +T N+G+  + + R        V+ G P    RD
Sbjct: 290 FTINAGWCQILTTRSNGKFYFLVITGCPNKNTRD 323


>gi|269123281|ref|YP_003305858.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Streptobacillus moniliformis DSM 12112]
 gi|268314607|gb|ACZ00981.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Streptobacillus moniliformis DSM 12112]
          Length = 375

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 109/232 (46%), Gaps = 23/232 (9%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK-TAATQNPS 116
           VID+N   ++          ASLTK+M + +  + +   K  L+ ++   K TA     S
Sbjct: 39  VIDINSELISPI--------ASLTKVMNVIVAKDEISKGKFSLSDKVTFDKYTAFITGGS 90

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTI 175
                    +T E  + A +  S+N+ + A  + I  G    F ILM+ KA+++GM NT 
Sbjct: 91  ISAWSGDNSYTLEDLLKAQMIFSSNNAAYATAKHIGLGDIDNFIILMNKKARELGMYNTY 150

Query: 176 YKNASGLHDK------NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RII 224
           + + +GL  +        I+TA+D  +L     +N     +Y + +   + N     R+ 
Sbjct: 151 FASPAGLPPRLNKGFGMDISTAKDLYLLAKYAIEN-TDILEYSNKKSITFPNSRDPLRMY 209

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
            N   +L + + + G+KTGY   +GFNI+   +  D  ++++ +   T ++R
Sbjct: 210 YNRITMLGE-YGVVGLKTGYHDEAGFNIIIISKIGDSTVISISLNSETEKQR 260


>gi|219668743|ref|YP_002459178.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
           hafniense DCB-2]
 gi|219539003|gb|ACL20742.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
           hafniense DCB-2]
          Length = 352

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 112/229 (48%), Gaps = 21/229 (9%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKL-HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
           D  R PAS  K++T  ++ E LQ+ +L  L  ++ V  +     P    L  K  FT   
Sbjct: 109 DTHRAPASTVKLLTGLLVHEKLQADELITLGEEVKVEGSVLGFKPGDKILV-KDLFT--- 164

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
              A+   SAND + A      G++++F   M++ A ++G Q++ +K A G+  ++Q TT
Sbjct: 165 ---AMYVYSANDAANALAVAAYGTKEQFIQAMNSYAAELGCQDSQFKTADGMPAEDQYTT 221

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRN---------RIITNHNKLLNKMHNIDGIK 241
           A+D AI+   + +  P    Y + +K              R I+N N+LL       G+K
Sbjct: 222 AKDLAIIAAKVTET-PVLMDYINQKKASVEWTDANGWKQVREISNTNQLLGIYPGDQGLK 280

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           TG T  +G  +VT +  +D  ++ V++G   S++R    +EL+   + K
Sbjct: 281 TGTTTEAGQCLVTYITSEDGDLLLVLLG---SKQRYTDTVELLDQGMAK 326


>gi|15835453|ref|NP_297212.1| D-alanyl-D-alanine carboxypeptidase, putative [Chlamydia muridarum
           Nigg]
 gi|7190867|gb|AAF39639.1| D-alanyl-D-alanine carboxypeptidase, putative [Chlamydia muridarum
           Nigg]
          Length = 438

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 33/228 (14%)

Query: 72  DEPRYPASLTKMMTLYIIFE--------YLQSKKLHLNTQIPVSKT-AATQNPS------ 116
           D+  +PAS+TK+ T  +I          ++  ++  L +  P +K  +  ++P       
Sbjct: 55  DQKIFPASMTKIATALLILRKHPDVLTRFITIRREPLTSITPQAKQQSGYRSPPHWLETD 114

Query: 117 --KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
              + LK K   +      AL+  SAND +    +    S   F   +++  K+IG QNT
Sbjct: 115 GVAIQLKSKEEVSGWDLFHALLISSANDAANVLADACCQSVPAFMHQLNDFLKEIGCQNT 174

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY--------RNRIITN 226
            + +  GLH  +  TTARD   L I++++   +      IR   Y          R +++
Sbjct: 175 HFNSPHGLHHPDHYTTARD---LAIIMKEALKEPLFCQVIRTASYTMESTNLSPERTLSS 231

Query: 227 HNKLLNKMHN-----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            N+LL+           G KTG T+++G NIV +    +  I+ V  G
Sbjct: 232 TNRLLSSSSTYFYPPCLGGKTGTTKSAGKNIVFAAEKNNRSIIVVAAG 279


>gi|188588906|ref|YP_001921735.1| D-alanyl-D-alanine carboxypeptidase family [Clostridium botulinum
           E3 str. Alaska E43]
 gi|251779044|ref|ZP_04821964.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|188499187|gb|ACD52323.1| D-alanyl-D-alanine carboxypeptidase family [Clostridium botulinum
           E3 str. Alaska E43]
 gi|243083359|gb|EES49249.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 425

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 22/210 (10%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL---YLKEKTYFT- 127
           D  RYPAS TK++T  ++ E     K   N+++  +++A  Q    L   Y+  +     
Sbjct: 61  DSKRYPASTTKLLTGLLLAE-----KFEKNSELSFTQSAKEQPEYSLNINYMGNRMQVGD 115

Query: 128 ---TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
               +  +  L+  S ND +    + ++GS   F+ LM+ +AK++G  NT +  A+GLHD
Sbjct: 116 KMLADDVMKGLLLFSGNDTAYMIADNVAGSSDAFSALMNKRAKELGANNTNFITANGLHD 175

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIR------KFRYRNRIITNHNKLLNKMHNID 238
            N  TTA D   L ++ +  F   ++  ++              I+ N N  L K  NI 
Sbjct: 176 PNHYTTAYD---LSLITKAAFDNPWERETMELKESPIDINGSRIILENRNLGLGKNGNIA 232

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           G KTG T  +G  +          IV VV+
Sbjct: 233 G-KTGLTNAAGGCLAAVYEKDGRKIVGVVL 261


>gi|166031844|ref|ZP_02234673.1| hypothetical protein DORFOR_01545 [Dorea formicigenerans ATCC
           27755]
 gi|166028297|gb|EDR47054.1| hypothetical protein DORFOR_01545 [Dorea formicigenerans ATCC
           27755]
          Length = 367

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 76  YPASLTKMMTLYIIFEYLQ-SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           YPAS TK++T  +  E    S  + +  +    K AA +    +  K     T E  +  
Sbjct: 142 YPASTTKILTALVALENGNLSDTVTVADEADSGKFAADEQTCGI--KAGDQLTLEDLLNG 199

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           L+  S ND + A  + I+GS +KFA +M+ +AKK+   N+ + N SGLHD N  TTA D
Sbjct: 200 LLLYSGNDNAVAIADHIAGSTEKFAEMMNAEAKKLMATNSHFVNPSGLHDDNHYTTAYD 258


>gi|1864022|gb|AAB50178.1| pencillin binding protein 4 [Staphylococcus aureus]
          Length = 431

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 103/219 (47%), Gaps = 30/219 (13%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTYFTTEQ 130
           PAS+TK+MT+Y+  E +   +L L+  + ++       T    + +KLY  +   +T   
Sbjct: 73  PASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQ--VWTIAD 130

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------ 184
            +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT + N +G  +      
Sbjct: 131 LLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRTF 190

Query: 185 -----KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLN 232
                K+Q   ++TARD AIL + + K  P+   +   ++       +T    N +    
Sbjct: 191 APTKYKDQEATVSTARDYAILDLHVIKETPKILDF--TKQLAPTTHAVTYYTFNFSLEGA 248

Query: 233 KMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           KM     DG+KTG +  + +N   + +     I  V+MG
Sbjct: 249 KMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMG 287


>gi|270289644|ref|ZP_06195946.1| D-alanyl-D-alanine carboxypeptidase, putative [Chlamydia muridarum
           Weiss]
          Length = 398

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 111/255 (43%), Gaps = 36/255 (14%)

Query: 72  DEPRYPASLTKMMTLYIIFE--------YLQSKKLHLNTQIPVSKT-AATQNPS------ 116
           D+  +PAS+TK+ T  +I          ++  ++  L +  P +K  +  ++P       
Sbjct: 15  DQKIFPASMTKIATALLILRKHPDVLTRFITIRREPLTSITPQAKQQSGYRSPPHWLETD 74

Query: 117 --KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
              + LK K   +      AL+  SAND +    +    S   F   +++  K+IG QNT
Sbjct: 75  GVAIQLKSKEEVSGWDLFHALLISSANDAANVLADACCQSVPAFMHQLNDFLKEIGCQNT 134

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY--------RNRIITN 226
            + +  GLH  +  TTARD   L I++++   +      IR   Y          R +++
Sbjct: 135 HFNSPHGLHHPDHYTTARD---LAIIMKEALKEPLFCQVIRTASYTMESTNLSPERTLSS 191

Query: 227 HNKLLNKMHN-----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM--PTSQERDQK 279
            N+LL+           G KTG T+++G NIV +    +  I+ V  G   P +Q   Q 
Sbjct: 192 TNRLLSSSSTYFYPPCLGGKTGTTKSAGKNIVFAAEKNNRSIIVVAAGYFGPAAQLY-QD 250

Query: 280 ALELITSFLEKKTLK 294
           A+ +      ++ L+
Sbjct: 251 AIAVCEDLFNEQLLR 265


>gi|270285635|ref|ZP_06195029.1| D-alanyl-D-alanine carboxypeptidase, putative [Chlamydia muridarum
           Nigg]
          Length = 414

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 111/255 (43%), Gaps = 36/255 (14%)

Query: 72  DEPRYPASLTKMMTLYIIFE--------YLQSKKLHLNTQIPVSKT-AATQNPS------ 116
           D+  +PAS+TK+ T  +I          ++  ++  L +  P +K  +  ++P       
Sbjct: 15  DQKIFPASMTKIATALLILRKHPDVLTRFITIRREPLTSITPQAKQQSGYRSPPHWLETD 74

Query: 117 --KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
              + LK K   +      AL+  SAND +    +    S   F   +++  K+IG QNT
Sbjct: 75  GVAIQLKSKEEVSGWDLFHALLISSANDAANVLADACCQSVPAFMHQLNDFLKEIGCQNT 134

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY--------RNRIITN 226
            + +  GLH  +  TTARD   L I++++   +      IR   Y          R +++
Sbjct: 135 HFNSPHGLHHPDHYTTARD---LAIIMKEALKEPLFCQVIRTASYTMESTNLSPERTLSS 191

Query: 227 HNKLLNKMHN-----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM--PTSQERDQK 279
            N+LL+           G KTG T+++G NIV +    +  I+ V  G   P +Q   Q 
Sbjct: 192 TNRLLSSSSTYFYPPCLGGKTGTTKSAGKNIVFAAEKNNRSIIVVAAGYFGPAAQLY-QD 250

Query: 280 ALELITSFLEKKTLK 294
           A+ +      ++ L+
Sbjct: 251 AIAVCEDLFNEQLLR 265


>gi|56962947|ref|YP_174674.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16]
 gi|56909186|dbj|BAD63713.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16]
          Length = 304

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 92/212 (43%), Gaps = 21/212 (9%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQG 131
           YPASLTK+MT  +  E ++     L+   PV  T        N S      +   T    
Sbjct: 72  YPASLTKIMTTIVALEQIED----LSAIAPVDVTTYHEMVASNASMAGFFGREDVTYRDL 127

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +   +  S  + + +    + G+ + F  +M++KA ++G+  T + N  GLH++ Q TTA
Sbjct: 128 LYGTMLTSGGEAANSLAVHVGGNVENFVQMMNDKAAELGLNGTHFTNPEGLHNEKQYTTA 187

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR------------YRNRIITNHNKLLNKMHNIDG 239
            D A L +    N   +   F+ + F+             ++ ++T  +K      +I G
Sbjct: 188 SDIAKL-LDYALNNSDFKTIFTTKMFQTTPTAEHPDGLLLQSTVLTFLHKKEQDRFDILG 246

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
            K+G T  +G    T    +D   + +VMG P
Sbjct: 247 GKSGTTYEAGQCWATLGLVEDTEYITIVMGAP 278


>gi|254820249|ref|ZP_05225250.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium intracellulare
           ATCC 13950]
          Length = 407

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 97/224 (43%), Gaps = 24/224 (10%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++   +   K    R+ PAS+ K++             L+LN  +  +   A    
Sbjct: 98  LVADLDSGAVIAAKDPHGRHRPASIIKVLVAMAAI-----NTLNLNKSVAGTADDAAAEG 152

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE---KKFAILMSNKAKKIGMQ 172
           +K+ ++E   FT  Q +  L+  S ND + A    + G +   +K  +L    A K+G Q
Sbjct: 153 TKVGVQEGGVFTVNQLLHGLLMHSGNDAAHALAMQLGGMQQALEKINVL----AAKLGGQ 208

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYRNRI------I 224
           +T     SGL      T+A D   +G+  R  +  P +    + R F +          +
Sbjct: 209 DTRVATPSGLDAPGMSTSAYD---IGLFYRYAWQNPTFANIVATRTFDFPGHGDHPGYEL 265

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            N N+LL K     G KTGYT ++G   V +  +    +VAV++
Sbjct: 266 ENDNQLLYKYPGALGGKTGYTDDAGQTFVGAANHDGRRLVAVLL 309


>gi|1586531|prf||2204232B penicillin-binding protein 4
          Length = 434

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 103/219 (47%), Gaps = 30/219 (13%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTYFTTEQ 130
           PAS+TK+MT+Y+  E +   +L L+  + ++       T    + +KLY  +   +T   
Sbjct: 73  PASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQ--VWTIAD 130

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------ 184
            +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT + N +G  +      
Sbjct: 131 LLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRTF 190

Query: 185 -----KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLN 232
                K+Q   ++TARD AIL + + K  P+   +   ++       +T    N +    
Sbjct: 191 APTKYKDQEATVSTARDYAILDLHVIKETPKILDF--TKQLAPTTHAVTYYTFNFSLEGA 248

Query: 233 KMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           KM     DG+KTG +  + +N   + +     I  V+MG
Sbjct: 249 KMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMG 287


>gi|73663386|ref|YP_302167.1| penicillin binding protein 4 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495901|dbj|BAE19222.1| penicillin binding protein 4 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 431

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 102/220 (46%), Gaps = 30/220 (13%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKEKTYFTTE 129
           YPAS+TK+MT+Y+  E +    L LN ++ ++       T    + +KLY  E   +T +
Sbjct: 69  YPASMTKLMTMYLTLEAVNKGDLSLNDKVKITDEHYRMSTLPELSNTKLYPGET--YTIK 126

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK---- 185
           + +   ++ S+N  +    + +SG+   F   M++KAK +GM++T + N +G  +K    
Sbjct: 127 ELLQITVSNSSNAAALILAKEVSGNLSDFTDKMNSKAKSLGMKDTHFVNPTGAENKQLKD 186

Query: 186 ----------NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL 231
                     N  +TA+D  IL     ++ P+   +   ++       +T    NH+   
Sbjct: 187 FAPKKYKNEDNNTSTAKDFGILSQHAVQDTPKILDF--TKQLAPTQHGVTYYTFNHSLEG 244

Query: 232 NKM--HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
             M     DG+KTG +  + +N   + +     I  V+MG
Sbjct: 245 ADMSLEGTDGLKTGSSDIADYNHTITTKRDGFRINQVIMG 284


>gi|90962503|ref|YP_536419.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           salivarius UCC118]
 gi|90821697|gb|ABE00336.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           salivarius UCC118]
          Length = 384

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 113/256 (44%), Gaps = 37/256 (14%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A ++ AK  Y   +ID    Q+   +    +YP ASLTK++TL +I + + ++KL  N +
Sbjct: 30  ADKIDAKAAY---MIDAGTGQVLYQQNANSKYPIASLTKILTLAVIMKDIHNQKLSWNQK 86

Query: 104 IPVSKT----AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           I V+K     A     S + L E   +T +  + +++  SA+  + A     +GS + F 
Sbjct: 87  IKVNKDVSDMANNWQYSNVQLNEGESYTVKSLVESMMIVSADGSTEALALVDAGSVQAFN 146

Query: 160 ILMSNKAKKIGMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNF 205
             M   A + G+ +    N  GL               D+    +A+D A++   L  N+
Sbjct: 147 EKMKEVAHEAGVTDAEIYNMIGLPNSDLGNLKLKNVGDDQENKFSAKDIALISKYLVNNY 206

Query: 206 PQYYKY-------FSIRKFRYRNRIITNHNKLLN------KMHNIDGIKTGYTRNSGFNI 252
           P+           F I   +  N  + N N +L       K   IDG+KTG+T  +G+  
Sbjct: 207 PEVIDITKQKNVDFKISADQTYN--MENINYMLEGSYAAPKNGTIDGLKTGFTDEAGYCF 264

Query: 253 VTSLRYKDDPIVAVVM 268
           V +  +    ++ V++
Sbjct: 265 VGTGTFNGQRVITVIL 280


>gi|226325575|ref|ZP_03801093.1| hypothetical protein COPCOM_03380 [Coprococcus comes ATCC 27758]
 gi|225206058|gb|EEG88412.1| hypothetical protein COPCOM_03380 [Coprococcus comes ATCC 27758]
          Length = 472

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 19/146 (13%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D   YPAS+TK++T  +  E       +L+ +I +     TQN      +   Y     G
Sbjct: 98  DGKAYPASITKILTALVALE-----NGNLDDKITI-----TQNSVDCVAEGDAYIGMIAG 147

Query: 132 --------ILALITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNASGL 182
                   + AL+  SAN+V+ A  E + G     F   M+ +AK++G  N+ ++N +GL
Sbjct: 148 EEISLNDALHALLMASANEVAYAIAENVGGLGYDGFVAKMNERAKELGAVNSDFENPNGL 207

Query: 183 HDKNQITTARDQAILGILLRKNFPQY 208
           + +N  TTARD A++   L +N  ++
Sbjct: 208 NAQNHYTTARDMALITQELLENHEEF 233


>gi|295089928|emb|CBK76035.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cf.
           saccharolyticum K10]
          Length = 569

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 118/261 (45%), Gaps = 36/261 (13%)

Query: 38  SIIMISMASELHAKPKYSS--------------IVIDVNKNQMTGFKQDEPRY-PASLTK 82
           +I+   + + + A P Y+S              IV+D +   +   K     Y PAS+TK
Sbjct: 8   TILCFFLTAAVSAHPAYASQEWPSDVSIEADAGIVMDADSGTVLYGKNIHDTYSPASITK 67

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGILALITRS 139
           ++T  I+ E        L+  +  SK A      + S          T    + AL+ +S
Sbjct: 68  VLTSIIVLE-----NCDLDEMVTFSKNAVYNVEADSSSAGYDTGDQATVRDCLYALLLKS 122

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AN+ + A  E ++G+ + FA +M+ KAK++G  ++ + N SGL+D+N   +A D A++  
Sbjct: 123 ANEAANALAEHVAGTTEAFAEMMNEKAKELGCVDSHFANPSGLNDENHYVSAYDMALITR 182

Query: 200 LLRKN--FPQ-----YYKYFSIRKFRYRNRIITNHNKLLNK-----MHNIDGIKTGYTRN 247
              +N  F +     YY+             ++  NKL+ K       ++ G KTGYT  
Sbjct: 183 YAFENEIFEEIISTTYYE-LPPNARNPEGLGVSPGNKLIKKNFPEYRPDVIGGKTGYTSI 241

Query: 248 SGFNIVTSLRYKDDPIVAVVM 268
           +   +VT  R  D  ++ VV+
Sbjct: 242 ALNTLVTGARQDDTTLITVVL 262


>gi|283797579|ref|ZP_06346732.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
 gi|291074687|gb|EFE12051.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
          Length = 569

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 118/261 (45%), Gaps = 36/261 (13%)

Query: 38  SIIMISMASELHAKPKYSS--------------IVIDVNKNQMTGFKQDEPRY-PASLTK 82
           +I+   + + + A P Y+S              IV+D +   +   K     Y PAS+TK
Sbjct: 8   TILCFFLTAAVSAHPAYASQEWPSDVSIEADAGIVMDADSGTVLYGKNIHDTYSPASITK 67

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRS 139
           ++T  I+ E        L+  +  SK A      + S          T    + AL+ +S
Sbjct: 68  VLTSIIVLE-----NCDLDEMVTFSKNAIYNVEADSSSAGYDTGDQATVRDCLYALLLKS 122

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AN+ + A  E ++G+ + FA +M+ KAK++G  ++ + N SGL+D+N   +A D A++  
Sbjct: 123 ANEAANALAEHVAGTTEAFAEMMNEKAKELGCVDSHFANPSGLNDENHYVSAYDMALITR 182

Query: 200 LLRKN--FPQ-----YYKYFSIRKFRYRNRIITNHNKLLNK-----MHNIDGIKTGYTRN 247
              +N  F +     YY+             ++  NKL+ K       ++ G KTGYT  
Sbjct: 183 YAFENEIFEEIISTTYYE-LPPNARNPEGLGVSPGNKLIKKNFPEYRPDVIGGKTGYTSI 241

Query: 248 SGFNIVTSLRYKDDPIVAVVM 268
           +   +VT  R  D  ++ VV+
Sbjct: 242 ALNTLVTGARQDDTTLITVVL 262


>gi|254518434|ref|ZP_05130490.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp.
           7_2_43FAA]
 gi|226912183|gb|EEH97384.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp.
           7_2_43FAA]
          Length = 429

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 104/230 (45%), Gaps = 20/230 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++ +D+N  ++   K  + +  PAS TK+MT  ++F   +SK   L     V K   T 
Sbjct: 42  AAVTMDINTGEIIYSKNADLKLSPASTTKLMTA-LLFAENKSKSDTLTFSDTVVKVTETS 100

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +   +      + E  + A++  SAND +    E + G+   F  +M++KA ++G++N
Sbjct: 101 LNNYKAINPGDKISAEDTMKAVMIFSANDTAYLMAESVGGTVDNFINMMNDKAAELGLKN 160

Query: 174 TIYKNASGLH---------DKNQITTARDQAILGI------LLRKNFPQYYKYFSIRKFR 218
           T + N SGL          + NQ TTA D A +GI       +R+         S+    
Sbjct: 161 THFVNPSGLEIDPLNPSNTEINQ-TTAYDLAQIGIAAFKNDWVRETMAPKSGEISVS-LS 218

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
               II + NKLL K  NI G KTG    +G   V         +V VV+
Sbjct: 219 GTPIIIESRNKLLGKNGNIGG-KTGTEEQAGHCFVGFYERDGRDLVTVVL 267


>gi|25027255|ref|NP_737309.1| putative penicillin-binding protein [Corynebacterium efficiens
           YS-314]
 gi|23492536|dbj|BAC17509.1| putative penicillin-binding protein [Corynebacterium efficiens
           YS-314]
          Length = 447

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 108/248 (43%), Gaps = 32/248 (12%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++  ++   K    RY PAS+ K +   I  E L   +     ++  +  AA    
Sbjct: 137 MVFDLDSGEILAAKDPHGRYRPASIIKALIGLIAIEQLDPTQ-----KVTGTWDAANIEG 191

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S++ + E   +T ++ +  L+  S ND +    + + G E     +++ +A++IG ++T 
Sbjct: 192 SRVGVGEGGEYTVDELLHGLLLASGNDAAYLLAQELGGDEATLE-MVNERAREIGTEDTF 250

Query: 176 YKNASGLHDKNQITTARDQAIL----------GILLRKNFPQYYKYFSIRKFRYRNRIIT 225
               SGL      T+A D A++            ++   F  +  +     F+     + 
Sbjct: 251 VATYSGLDAPGMSTSAYDMALIYQHAWKNPRFAQIVDTEFIDFPGWGDNEGFQ-----VW 305

Query: 226 NHNKLLNKMHNIDGI--KTGYTRNSGFNIVTSLRYKDDPIVAVVM------GMPTSQERD 277
           N N L   M++ DGI  KTGYT ++    V +L  +   I AV++      G P  Q R+
Sbjct: 306 NDNGLF--MNDPDGIGGKTGYTDDANHTFVGALNREGRRIGAVILDTTIDKGRPWEQARE 363

Query: 278 QKALELIT 285
                LIT
Sbjct: 364 LIDASLIT 371


>gi|259506608|ref|ZP_05749510.1| penicillin-binding protein [Corynebacterium efficiens YS-314]
 gi|259165806|gb|EEW50360.1| penicillin-binding protein [Corynebacterium efficiens YS-314]
          Length = 438

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 108/248 (43%), Gaps = 32/248 (12%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++  ++   K    RY PAS+ K +   I  E L   +     ++  +  AA    
Sbjct: 128 MVFDLDSGEILAAKDPHGRYRPASIIKALIGLIAIEQLDPTQ-----KVTGTWDAANIEG 182

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S++ + E   +T ++ +  L+  S ND +    + + G E     +++ +A++IG ++T 
Sbjct: 183 SRVGVGEGGEYTVDELLHGLLLASGNDAAYLLAQELGGDEATLE-MVNERAREIGTEDTF 241

Query: 176 YKNASGLHDKNQITTARDQAIL----------GILLRKNFPQYYKYFSIRKFRYRNRIIT 225
               SGL      T+A D A++            ++   F  +  +     F+     + 
Sbjct: 242 VATYSGLDAPGMSTSAYDMALIYQHAWKNPRFAQIVDTEFIDFPGWGDNEGFQ-----VW 296

Query: 226 NHNKLLNKMHNIDGI--KTGYTRNSGFNIVTSLRYKDDPIVAVVM------GMPTSQERD 277
           N N L   M++ DGI  KTGYT ++    V +L  +   I AV++      G P  Q R+
Sbjct: 297 NDNGLF--MNDPDGIGGKTGYTDDANHTFVGALNREGRRIGAVILDTTIDKGRPWEQARE 354

Query: 278 QKALELIT 285
                LIT
Sbjct: 355 LIDASLIT 362


>gi|295115036|emb|CBL35883.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
           SM4/1]
          Length = 569

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 118/261 (45%), Gaps = 36/261 (13%)

Query: 38  SIIMISMASELHAKPKYSS--------------IVIDVNKNQMTGFKQDEPRY-PASLTK 82
           +I+   + + + A P Y+S              IV+D +   +   K     Y PAS+TK
Sbjct: 8   TILCFFLTAAVSAHPAYASQEWPSDVSIEADAGIVMDADSGTVLYGKNIHDTYSPASITK 67

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGILALITRS 139
           ++T  I+ E        L+  +  SK A      + S          T    + AL+ +S
Sbjct: 68  VLTSIIVLE-----NCDLDEMVTFSKNAVYNVEADSSSAGYDTGDQATVRDCLYALLLKS 122

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AN+ + A  E ++G+ + FA +M+ KAK++G  ++ + N SGL+D+N   +A D A++  
Sbjct: 123 ANEAANALAEHVAGTTEAFAEMMNEKAKELGCVDSHFANPSGLNDENHYVSAYDMALITR 182

Query: 200 LLRKN--FPQ-----YYKYFSIRKFRYRNRIITNHNKLLNK-----MHNIDGIKTGYTRN 247
              +N  F +     YY+             ++  NKL+ K       ++ G KTGYT  
Sbjct: 183 YAFENEIFEEIISTTYYE-LPPNARNPEGLGVSPGNKLIKKNFPEYRPDVIGGKTGYTSI 241

Query: 248 SGFNIVTSLRYKDDPIVAVVM 268
           +   +VT  R  D  ++ VV+
Sbjct: 242 ALNTLVTGARQDDTTLITVVL 262


>gi|302874417|ref|YP_003843050.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           cellulovorans 743B]
 gi|307690977|ref|ZP_07633423.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           cellulovorans 743B]
 gi|302577274|gb|ADL51286.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           cellulovorans 743B]
          Length = 444

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 129/294 (43%), Gaps = 28/294 (9%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +I +DVN  ++   K  D   YPAS+TK+M+  ++ + L  + L   T     + ++  N
Sbjct: 37  AITLDVNTGEIIYAKNADAKAYPASITKLMSAILLEKNLSKEDLLTYTANAKVQPSSAIN 96

Query: 115 PSKLYLKEKTYFTTEQGILALITRSAND----VSTAFGEFISGSEKKFAILMSNKAKKIG 170
             +L +      + +  +  ++  SAND    V+T   +  S    +F  +M+ +A+++G
Sbjct: 97  TDRLSVPVGQQISADTALKTMLLASANDMTEMVATNIPKRNSNDNTEFIAMMNAEAQRLG 156

Query: 171 MQNTIYKNASGLHD--KNQITTARDQAILGILLRKN------FPQYYKYFSIRKFRYRNR 222
           M NT +  ++GL D     +TTA D  ILG  + KN      +P      +I        
Sbjct: 157 MVNTHFVTSNGLDDNTNEHLTTAYDLTILGREVAKNPWTREIWPLKSTIIAIPGLASFE- 215

Query: 223 IITNHNKLLN---KMHN--IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE-- 275
            I N N+ +    ++H+    G KTGYT  +G  +++     +  I+ VV+    S    
Sbjct: 216 -IGNTNQFVYPNFELHDPTCIGSKTGYTDKAGRCLLSIFERDNRQIIGVVLNSQLSPNDL 274

Query: 276 ---RDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
               D K +   +   EKK L+        N   TS KK   +  +   Y  FK
Sbjct: 275 VAFNDMKQIIDYSYSAEKKVLEATDPATGVN---TSYKKDTTVLTVPVEYKVFK 325


>gi|253682534|ref|ZP_04863331.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum D
           str. 1873]
 gi|253562246|gb|EES91698.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum D
           str. 1873]
          Length = 444

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 119/258 (46%), Gaps = 37/258 (14%)

Query: 35  LFLSIIMISMASELHAKPKY--SSIVIDVNKNQMTGFKQDE--PRYPASLTKMMTLYIIF 90
           +FLS    + A+ L+A      S+IV+D    ++   K  +  P YPAS TK++T  ++ 
Sbjct: 14  IFLSFCSTAFATTLNAPSVVGKSAIVVDAKTGEVIYAKNVDTSPMYPASTTKLLTALLLA 73

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPS-------KLYLKEKTYFTTEQGILALITRSANDV 143
           E  Q       T I      A++ P        K  LK     + +  +  L+  SAND+
Sbjct: 74  ENKQP------TDILTYTDGASKQPEYTLRSFLKGKLKVGDKMSADDAMKGLLLHSANDI 127

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK--NQITTARDQAILGILL 201
           +    E ++G+   FA +M+NK KK+G+ +T +   +GL +   N  T+A D +I+G   
Sbjct: 128 AYMIAENVAGNVDNFAKMMNNKIKKLGLTHTHFVTPNGLDNGITNHYTSAYDLSIIGKAA 187

Query: 202 RKNFPQYYKYFSIR--KFRYRNRII---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
            +N     K  S++  K    N ++    N NKLL           G T +S FN   S+
Sbjct: 188 YEN-EWVRKTMSLKKDKIELTNGVLGYPENRNKLL-----------GQTLDSNFNSKISI 235

Query: 257 RYKDDPIV-AVVMGMPTS 273
             K+ P+  A+ +G  T 
Sbjct: 236 NIKNVPVSNAICIGGKTG 253


>gi|330827968|ref|YP_004390920.1| D-alanyl-D-alanine carboxypeptidase family protein [Aeromonas
           veronii B565]
 gi|328803104|gb|AEB48303.1| D-alanyl-D-alanine carboxypeptidase family protein [Aeromonas
           veronii B565]
          Length = 284

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 114/236 (48%), Gaps = 28/236 (11%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILA 134
           ASLTK+MT  ++ +      L LN  + V+     +     S+L +  +     E   +A
Sbjct: 56  ASLTKLMTALVVLD----ANLRLNEMLTVTNADIDRIKGTGSRLAIGSR-LSRAEMLHIA 110

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           L++ S N  ++A      G ++ F   M+ KA+ +GM NT Y +++GL+ +N ++TA+D 
Sbjct: 111 LMS-SENRAASALARHYPGGQRAFVEAMNAKARMLGMWNTRYADSTGLNPRN-VSTAQDL 168

Query: 195 AILGI------LLRK--NFPQYYKYFSIRKFRYRNRIITNHNKLLNK-MHNIDGIKTGYT 245
           A L        L+R+     Q Y   + R+  Y      N N+L+ +        KTGY 
Sbjct: 169 AKLAAAAASYPLIRQYSTDEQSYVRTNKRQLHY-----LNSNRLIREGQWEFTLSKTGYI 223

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE---KKTLKHQQT 298
           R +G  +V   +   +P++ V++   T+ +R   A + I ++LE   + TL   Q+
Sbjct: 224 REAGRCLVLGTKVNREPVIMVLLNAETTNDRVADA-KRIKTWLESSGRTTLAANQS 278


>gi|187935277|ref|YP_001886777.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723430|gb|ACD24651.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum B
           str. Eklund 17B]
          Length = 425

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 96/210 (45%), Gaps = 22/210 (10%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL---YLKEKTYFT- 127
           D  RYPAS TK++T  ++ E     K   N++I  +++A  Q    L   Y+  K     
Sbjct: 61  DSKRYPASTTKLLTGLLLAE-----KFEKNSEISFTQSAKEQPEYSLNINYMGNKMQVGD 115

Query: 128 ---TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
               +  +  L+  S ND +    + ++GS   F+ LM+ KAK++G  N+ +  A+GLHD
Sbjct: 116 KMLADDVMKGLLLFSGNDTAYMIADNVAGSANAFSELMNKKAKELGANNSNFITANGLHD 175

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIR------KFRYRNRIITNHNKLLNKMHNID 238
            N  TTA D   L ++ +  F   ++  ++              I+ N N  L K  NI 
Sbjct: 176 PNHYTTAYD---LSLITKAAFENPWEKETMELKEAPIDINGSRIILENRNLGLGKNGNIA 232

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           G KTG T  +G  +          I+ VV+
Sbjct: 233 G-KTGSTNAAGGCLAAVYEKDGRKIIGVVL 261


>gi|126434529|ref|YP_001070220.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
           sp. JLS]
 gi|126234329|gb|ABN97729.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
           sp. JLS]
          Length = 264

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 91/212 (42%), Gaps = 26/212 (12%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL------QSKK 97
           A  L   P  + ++ D++  ++   +   EP  PAS  K++   ++ ++L      ++ +
Sbjct: 24  AVALPEGPAQAWLLADLDSGRVLASRNPYEPHAPASTIKVLLAMVVLDHLSPDNFARANR 83

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
            H   +            S + L     +TT Q + AL+  S ND +    + + G    
Sbjct: 84  SHTEVEC-----------SCVGLTPGQPYTTRQLLSALLMVSGNDAANMLADMLGGQRAA 132

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKN--QITTARDQAILGILLRK--NFPQYYKYFS 213
            A  M+ KA  +G ++T   + SGL       ITT  D   L ++LR   N+P   +   
Sbjct: 133 VAA-MNRKAALVGAKSTRASSPSGLDGPGWESITTPHD---LAVMLRAALNYPLIAQIMR 188

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
                +  + +TN N+LL++       KTG+T
Sbjct: 189 SPTAPFPGKTLTNQNELLSRYPGDIAGKTGFT 220


>gi|145517883|ref|XP_001444819.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412252|emb|CAK77422.1| unnamed protein product [Paramecium tetraurelia]
          Length = 397

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 110/247 (44%), Gaps = 29/247 (11%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHL-NTQIPVSK---- 108
           S  VI+    Q M G+ Q + R  AS+TK+MT ++  +  Q  +L L NT     +    
Sbjct: 158 SWCVINGKNGQLMGGYNQYKSRQMASITKIMTCWLALKLTQQFQLDLDNTYFTAERIGGT 217

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG---EFISGSEKKFAILMSNK 165
           TA   +  KL +++  Y         L+  S ND + +     E   G +  F   M+  
Sbjct: 218 TAQLSSGDKLSIRDLLY--------GLMLPSGNDAAISLQHNFELYKGCD--FIQQMNQN 267

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYK---YFS--IRKFR 218
           A+ IGM+ T Y N  GL+ +   ++A D  IL     +N  F    K   YFS    KF 
Sbjct: 268 AQDIGMELTSYANPHGLYHEANYSSAYDIGILTYHAMQNLQFASIVKTKIYFSEIEDKFG 327

Query: 219 YRNRII-TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
               I   N N++L       G+KTG T+ +G  +V      ++  + V++   +   R 
Sbjct: 328 ESKEIFWENTNRML--YQGFRGVKTGITKEAGPCVVEYFEDNENSYIIVLLNCRSVDLRW 385

Query: 278 QKALELI 284
           Q A++L+
Sbjct: 386 QDAIKLL 392


>gi|301337031|ref|ZP_07225233.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia muridarum MopnTet14]
          Length = 398

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 111/255 (43%), Gaps = 36/255 (14%)

Query: 72  DEPRYPASLTKMMTLYIIFE--------YLQSKKLHLNTQIPVSKT-AATQNPS------ 116
           D+  +PAS+TK+ T  +I          ++  ++  L +  P +K  +  ++P       
Sbjct: 15  DQKIFPASMTKIATALLILRKHPDVLTRFITIRREPLTSITPQAKQQSGYRSPPHWLETD 74

Query: 117 --KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
              + LK K   +      AL+  SAND +    +    S   F   +++  K+IG QNT
Sbjct: 75  GVAIQLKSKEEVSGWDLFHALLISSANDAANVLADACCQSVPAFMHQLNDFLKEIGCQNT 134

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY--------RNRIITN 226
            + +  GLH  +  TTARD   L I++++   +      IR   Y          R +++
Sbjct: 135 HFNSPHGLHHPDHYTTARD---LAIIMKEALKEPLFCQVIRTASYTMESTNLSPERTLSS 191

Query: 227 HNKLLNKMHN-----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM--PTSQERDQK 279
            N+LL+           G KTG T+++G NIV +    +  I+ V  G   P +Q   Q 
Sbjct: 192 TNRLLSSSSTYFYPPCLGGKTGTTKSAGKNIVFAAEKNNRSIIVVAAGYFGPAAQLY-QD 250

Query: 280 ALELITSFLEKKTLK 294
           A+ +      ++ L+
Sbjct: 251 AIAVCEDLFNEQLLR 265


>gi|326316983|ref|YP_004234655.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323373819|gb|ADX46088.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 371

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 23/210 (10%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQ 113
           ++VID +  ++   K D    P ASLTK+MT  +I E     KL ++  I +++    T+
Sbjct: 115 ALVIDQDTQEVLLSKNDHAVLPIASLTKLMTGLLISE----AKLPMDEPITITQDDVDTE 170

Query: 114 NPSKLYLKEKTYFTTEQGI-LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
             S   L   T  T  + + LAL++ S N  + A G    G  + F   M+ KA+ IGM 
Sbjct: 171 KFSSSRLAVGTTLTRGEMLHLALMS-SENRAAHALGRTFPGGLEAFVARMNAKARLIGMT 229

Query: 173 NTIYKNASGLHDKNQITTARDQAIL------GILLRK--NFPQYYKYFSIRKFRYRNRII 224
            T Y   +GL   NQ ++ARD A L        LLR+    P Y      R   +     
Sbjct: 230 ETRYVEPTGLSSHNQ-SSARDLATLVNVAHSDPLLRELTTSPGYEVAVGRRTLHF----- 283

Query: 225 TNHNKLL-NKMHNIDGIKTGYTRNSGFNIV 253
            N N+L+ N   +I   KTGY   +G  +V
Sbjct: 284 NNTNRLVKNPAWDIGLQKTGYISEAGRCLV 313


>gi|256397559|ref|YP_003119123.1| serine-type D-Ala-D-Ala carboxypeptidase [Catenulispora acidiphila
           DSM 44928]
 gi|256363785|gb|ACU77282.1| Serine-type D-Ala-D-Ala carboxypeptidase [Catenulispora acidiphila
           DSM 44928]
          Length = 410

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 76/177 (42%), Gaps = 12/177 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLYLKEKTYFTTEQGILAL 135
           PAS  K++T   +   L    +HL+    ++  A A    S + +K    +       A+
Sbjct: 89  PASTLKVLTALALMPRLDPAAVHLSVPGDIASLATAEPGASAVGIKPGLSYRVSDLWNAV 148

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
             RS ND          G+      LM   A+++   +T+  NA G     Q+++A D  
Sbjct: 149 FLRSGNDAIATLAAMAGGAGPTVD-LMRQTAQRLHANDTVVVNADGYDADGQVSSAYD-- 205

Query: 196 ILGILLRKNF--PQYYKYFSIRKFRYRNR-----IITNHNKLLNKMHNIDGIKTGYT 245
            L ++ R     P +  Y S++K ++ +       I N N+LL K   + G+K GYT
Sbjct: 206 -LALMARAGLQDPGFRAYCSLQKAKFPSVNGTTFEIDNENRLLGKYPGMIGVKNGYT 261


>gi|259502317|ref|ZP_05745219.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259169697|gb|EEW54192.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 407

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 127/270 (47%), Gaps = 37/270 (13%)

Query: 34  ILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYII 89
           I+ L +++  +A++  A  +    ++++ID +  Q+   +    + P AS++K++T+ +I
Sbjct: 10  IMILPLMLAGIATDAMASDRINARAAVMIDASTGQVLYEQNANQKLPVASISKLLTVAVI 69

Query: 90  FEYLQSKKLHLNTQIPVSKTAAT--QNPS--KLYLKEKTYFTTEQGILALITRSANDVST 145
            + L+ + +  +T++ VS   A    +PS   + ++    +T  + + A + +SA+  + 
Sbjct: 70  HDELKQRVITADTKVNVSSDVAAIASDPSYSAIGVQAGQAYTVRELLNAAMVKSADGATL 129

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------------QITTA 191
           A       + ++F + M  KA++IG++N    N  GL + +                 TA
Sbjct: 130 ALAGADGSNMEEFNLKMDQKAREIGLRNFTIVNPVGLTNGDLKGLKLEQYADNAENAMTA 189

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRY---RNRIITNHNKLLNKM----------HNID 238
            D A L   L + +P   +  + R   +   +++     N  LNKM            ID
Sbjct: 190 NDVARLARYLIQTYPDLLQVTAQRSANFYIAKDKATKAEN--LNKMLPGDRYAVSGVKID 247

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           G+KTG +  +G + V++  Y+   ++ VV+
Sbjct: 248 GLKTGTSAAAGPSFVSTGLYRGHRVITVVL 277


>gi|332359192|gb|EGJ37013.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK49]
          Length = 409

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 98/229 (42%), Gaps = 33/229 (14%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFTTE 129
           P    S+T ++T+Y+++E +    L  +T + +S  A   T NP  S + L+ K Y   +
Sbjct: 37  PIEVGSITNLLTVYLVYEAIDRGDLTADTYVDISDYAYNLTANPNISNVPLEAKRY-KVK 95

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH------ 183
             I A +  S+N  + A  E + GSE+ F  +M  K K+ G+ +    N++GL+      
Sbjct: 96  DLIAASLMSSSNSATIALAEKLGGSEENFVQMMKAKLKEWGITDATIVNSTGLNTLLLEY 155

Query: 184 ------------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
                             D     +A D A++   L  +FPQ     S    +     + 
Sbjct: 156 ATEETEYSASASTTKKSKDTENKFSAYDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLE 215

Query: 226 NHNKLLNKMHN----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           N+N +L    N    +DG+K G +   G + V +       ++ VV+ +
Sbjct: 216 NYNFMLENQSNFRSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVLDV 264


>gi|120611767|ref|YP_971445.1| murein-DD-endopeptidase [Acidovorax citrulli AAC00-1]
 gi|120590231|gb|ABM33671.1| murein-DD-endopeptidase [Acidovorax citrulli AAC00-1]
          Length = 371

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 23/210 (10%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQ 113
           ++VID +  ++   K D    P ASLTK+MT  +I E     KL ++  I +++    T+
Sbjct: 115 ALVIDQDTQEVLLSKNDHAVLPIASLTKLMTGLLISE----AKLPMDEPITITQDDVDTE 170

Query: 114 NPSKLYLKEKTYFTTEQGI-LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
             S   L   T  T  + + LAL++ S N  + A G    G  + F   M+ KA+ IGM 
Sbjct: 171 KFSSSRLAVGTTLTRGEMLHLALMS-SENRAAHALGRTFPGGLEAFVARMNAKARLIGMT 229

Query: 173 NTIYKNASGLHDKNQITTARDQAIL------GILLRK--NFPQYYKYFSIRKFRYRNRII 224
            T Y   +GL   NQ ++ARD A L        LLR+    P Y      R   +     
Sbjct: 230 ETRYVEPTGLSSHNQ-SSARDLATLVNVAHADPLLRELTTSPGYEVAVGRRTLHF----- 283

Query: 225 TNHNKLL-NKMHNIDGIKTGYTRNSGFNIV 253
            N N+L+ N   +I   KTGY   +G  +V
Sbjct: 284 NNTNRLVKNPAWDIGLQKTGYISEAGRCLV 313


>gi|323486924|ref|ZP_08092240.1| hypothetical protein HMPREF9474_03991 [Clostridium symbiosum
           WAL-14163]
 gi|323691972|ref|ZP_08106221.1| hypothetical protein HMPREF9475_01084 [Clostridium symbiosum
           WAL-14673]
 gi|323399787|gb|EGA92169.1| hypothetical protein HMPREF9474_03991 [Clostridium symbiosum
           WAL-14163]
 gi|323503981|gb|EGB19794.1| hypothetical protein HMPREF9475_01084 [Clostridium symbiosum
           WAL-14673]
          Length = 321

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 7/123 (5%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQNPSKLY-LKEKTYFTTEQ 130
           E  YPAS TK+MT  I  E     + +L+ Q+ V++ A  T+  + L  +K     T + 
Sbjct: 93  ERLYPASTTKVMTAIIALE-----EGNLSDQVTVTEDAVITEAGASLCGIKPGDVITMQD 147

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  L+  S ND + A    + GS   FA  M+ +A+++G   T + N SGL D+N  TT
Sbjct: 148 LLYGLMMPSGNDAANAIAVHMYGSIDAFADRMNVRARELGATGTHFMNPSGLTDENHYTT 207

Query: 191 ARD 193
           A D
Sbjct: 208 AYD 210


>gi|313498269|gb|ADR59635.1| PbpG [Pseudomonas putida BIRD-1]
          Length = 312

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 109/228 (47%), Gaps = 25/228 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+++ID+N N+       +   P AS+TK+MT  ++ +     KL ++  + ++      
Sbjct: 49  SALLIDLNSNKELYSSHADRVVPIASVTKLMTAMVVLD----AKLPMDEMLTMT---IAN 101

Query: 114 NP------SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
           NP      S++ L  +      + +L  +  S N  + +      G    F   M+ KA+
Sbjct: 102 NPEMKGVYSRVRLGSQ--LDRRETLLITLMSSENRAANSLANAYPGGYPAFIKAMNAKAR 159

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRI 223
            +GM +T Y   +GL  +N ++TARD A L +  RK +P   +  + R+    FR  N  
Sbjct: 160 SLGMAHTRYVEPTGLSTQN-VSTARDLAKLLMASRK-YPMLSELSTTREKTVAFRKPNYT 217

Query: 224 IT--NHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +   N + L+NK + +I   KTG+T  +G  +V   R  + P+  V++
Sbjct: 218 LGFRNTDHLVNKSNWDIKLTKTGFTNEAGHCLVLLTRMDNRPVAMVIL 265


>gi|327478643|gb|AEA81953.1| D-alanyl-D-alanine endopeptidase [Pseudomonas stutzeri DSM 4166]
          Length = 312

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 118/254 (46%), Gaps = 23/254 (9%)

Query: 31  MGKILFLSIIMISMASELHAKPKY------SSIVIDVNKNQMTGFKQDEPRYP-ASLTKM 83
           +  +LF  +  + +     AKP        S++++D+N N++      +   P AS+TK+
Sbjct: 7   VASLLFACLASLPVIHAQAAKPMVQELASGSALLVDLNTNEVLYSSNPDMVVPIASVTKL 66

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEK--TYFTTEQGILALITRSAN 141
           MT  ++ +     KL L+  +PV+   A +    +Y + +  +  +  + +L  +  S N
Sbjct: 67  MTAMVVLD----AKLPLDQALPVTIRDAKEM-QGVYSRVRIGSEISRREMLLLTLMSSEN 121

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
             + +      G    F   M+ KA+ +GM  T Y   +GL ++N +++A D   L I  
Sbjct: 122 RAAASLAHHYPGGYAAFIQAMNAKARALGMSRTHYVEPTGLSERN-VSSANDLVKL-IRA 179

Query: 202 RKNFPQYYKYFSIRK----FRYRNRIIT--NHNKLLNKMH-NIDGIKTGYTRNSGFNIVT 254
            + +P   ++ +  +    FR  N  +   N N L+ K + +I   KTG+T  +G  +V 
Sbjct: 180 SRQYPLIQQFSTTDEKTVAFRKPNYTLGFRNTNALVRKNNWDIQLSKTGFTNAAGHCLVM 239

Query: 255 SLRYKDDPIVAVVM 268
           S   K  P+  VV+
Sbjct: 240 STTMKQRPVAFVVL 253


>gi|307327153|ref|ZP_07606342.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           violaceusniger Tu 4113]
 gi|306887234|gb|EFN18231.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           violaceusniger Tu 4113]
          Length = 311

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 108/246 (43%), Gaps = 34/246 (13%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+ A+  Y   ++D   N+    K    + P AS TK+MT  ++ E   ++ L LN Q+ 
Sbjct: 41  EVSAQGAY---LLDTGSNKELMAKDANTKRPMASTTKIMTALVVLE---TRGLDLNQQVT 94

Query: 106 VSK------TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF------GEFISG 153
           V +      T A  + + L   +K   T  Q + AL+  S  D + A       G+  + 
Sbjct: 95  VKQEYRDYVTKAGASTADLQTGDK--LTVNQLLYALMLPSGCDAAMALADTFGTGDTTAE 152

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRKN--FPQYYK 210
             K F   M+ KAK +G+ NT Y +  G+  D +  +T RD A L      N  F    K
Sbjct: 153 RTKSFISKMNAKAKDLGLANTNYDSFDGVSADSDNYSTPRDVAQLTRRAMDNATFDTVVK 212

Query: 211 YFSIRK--------FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
             S ++         RY +    N N+LL       G+KTG T  +G  +V + +  D  
Sbjct: 213 SVSTKQEAPAANGHTRYYS--WDNTNQLLGSYQGAIGVKTGTTTPAGPCLVFAAKRGDKE 270

Query: 263 IVAVVM 268
           +V VV+
Sbjct: 271 VVGVVL 276


>gi|193222252|emb|CAL61007.2| D-alanyl-D-alanine endopeptidase precursor (DD-endopeptidase)
           (Penicillin-binding protein 5) (PBP-5) [Herminiimonas
           arsenicoxydans]
          Length = 308

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 13/237 (5%)

Query: 39  IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKK 97
           I  +SM  +  A     ++VID + +++   K      P AS+TK+MT  ++ E  Q   
Sbjct: 42  IAGLSMTRDALALASSVALVIDQSTSEVLFEKNANVTLPIASITKLMTGLVVVEAQQD-- 99

Query: 98  LHLNTQIPV-SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
             +N  + V ++    +  S   L+  +  +    +   +  S N  ++A G    G  +
Sbjct: 100 --MNEMLEVTAEDIDREKNSSSRLRVGSQLSRANMLHIALMSSENRAASALGRHYPGGLR 157

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F   M+ KAK +GM+ T Y +++GL   N + +ARD A L ++   N P   +Y +  K
Sbjct: 158 AFVATMNAKAKSLGMRGTHYVDSTGL-SSNNVASARDLAKL-VVEAYNHPILRQYSTDSK 215

Query: 217 FRYR--NRII--TNHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +      R +   N N+L+       GI KTGY   +G  +V     K+ PIV + +
Sbjct: 216 YVVEPGGRALQYANSNRLVTNPDWEIGIQKTGYISEAGRCLVMQTNIKERPIVMIFL 272


>gi|146280427|ref|YP_001170580.1| D-alanyl-D-alanine endopeptidase [Pseudomonas stutzeri A1501]
 gi|145568632|gb|ABP77738.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas stutzeri A1501]
          Length = 390

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 118/254 (46%), Gaps = 23/254 (9%)

Query: 31  MGKILFLSIIMISMASELHAKPKY------SSIVIDVNKNQMTGFKQDEPRYP-ASLTKM 83
           +  +LF  +  + +     AKP        S++++D+N N++      +   P AS+TK+
Sbjct: 85  VASLLFACLASLPVIHAQAAKPMVQELASGSALLVDLNTNEVLYSSNPDMVVPIASVTKL 144

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEK--TYFTTEQGILALITRSAN 141
           MT  ++ +     KL L+  +PV+   A +    +Y + +  +  +  + +L  +  S N
Sbjct: 145 MTAMVVLD----AKLPLDQALPVTIRDAKEM-QGVYSRVRIGSEISRREMLLLTLMSSEN 199

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
             + +      G    F   M+ KA+ +GM  T Y   +GL ++N +++A D   L I  
Sbjct: 200 RAAASLAHHYPGGYAAFIQAMNAKARALGMSRTHYVEPTGLSERN-VSSANDLVKL-IRA 257

Query: 202 RKNFPQYYKYFSIRK----FRYRNRIIT--NHNKLLNKMH-NIDGIKTGYTRNSGFNIVT 254
            + +P   ++ +  +    FR  N  +   N N L+ K + +I   KTG+T  +G  +V 
Sbjct: 258 SRQYPLIQQFSTTDEKTVAFRKPNYTLGFRNTNALVRKNNWDIQLSKTGFTNAAGHCLVM 317

Query: 255 SLRYKDDPIVAVVM 268
           S   K  P+  VV+
Sbjct: 318 STTMKQRPVAFVVL 331


>gi|145300681|ref|YP_001143522.1| D-alanyl-D-alanine carboxypeptidase; penicillin binding protein 7
           [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853453|gb|ABO91774.1| D-alanyl-D-alanine carboxypeptidase; penicillin binding protein 7
           [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 275

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 113/219 (51%), Gaps = 23/219 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-P-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S++V+DVN  + T ++++  R  P ASLTK+MT  ++ E  QS    LN  + + +    
Sbjct: 38  SALVVDVNTGK-TLYQKNATRVRPIASLTKLMTALVVLEGRQS----LNQTLSIDQND-R 91

Query: 113 QNPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            N    Y  ++  T  T    +   +  S N +++A      G  + F   M+NKA+++G
Sbjct: 92  DNVKHTYSRIRFGTKVTRRDALHLTLMSSENRMASALARHYPGGRQAFIRAMNNKARQLG 151

Query: 171 MQNTIYKNASGLHDKNQITTARDQA-ILGILLRKNFPQYYKYFSIRKFRYRN---RIITN 226
           M+N+ + +++GL  +N ++TA+D A ++    R+   + +   + R  R+     R++ N
Sbjct: 152 MRNSRFHDSTGLSTRN-VSTAQDLAKLISAAYRQPLIRQFTQDTNRDMRFNTPAYRLMFN 210

Query: 227 HNKLLNKMHNID-GI---KTGYTRNSGFNIVTSLRYKDD 261
           +   L K  N D G+   KTG+T  +G  +V  +R K D
Sbjct: 211 NTNPLVK--NPDWGVRLSKTGFTDEAGRCLV--MRAKPD 245


>gi|75764312|ref|ZP_00743846.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74488199|gb|EAO51881.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 228

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 93/173 (53%), Gaps = 20/173 (11%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ-IPVSKTA-- 110
           ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   K    TQ I VS+ A  
Sbjct: 48  AAILVEANSGKIVYQKNADELLSIASMTKMMSEYLVHEAVDKGKPLSGTQKIKVSEYAYK 107

Query: 111 ATQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            +Q+ S   + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+
Sbjct: 108 VSQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKE 167

Query: 169 IGMQNTIYKNASGLHDKN------QITT--------ARDQAILGILLRKNFPQ 207
           +G++N  + N++GL +K+      + TT        A+D A L   L K++P+
Sbjct: 168 LGLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPK 220


>gi|167749407|ref|ZP_02421534.1| hypothetical protein EUBSIR_00361 [Eubacterium siraeum DSM 15702]
 gi|167657579|gb|EDS01709.1| hypothetical protein EUBSIR_00361 [Eubacterium siraeum DSM 15702]
          Length = 349

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 93/201 (46%), Gaps = 31/201 (15%)

Query: 76  YPASLTKMMTLYIIFEYLQSK-KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           +PAS TK++T     EY   + + ++ +++ +      Q+ S  ++ E +     + + A
Sbjct: 109 FPASTTKILTALTAIEYTAPEYEYYVGSELGL----VAQDSSMSWIAEGSSLCRNEILTA 164

Query: 135 LITRSANDVSTA---------FGEFISGSEKK--FAILMSNKAKKIGMQNTIYKNASGLH 183
           ++  S ND +           +G+ IS ++    FA+LM++ AKK+G +NT +    G H
Sbjct: 165 MLAPSGNDAAYTIAVNVARKLYGDDISDNDAVAYFAVLMNDYAKKLGAKNTHFTVPDGYH 224

Query: 184 DKNQITTARD-----------QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           D    TTA D           + I  I  +     Y +  ++  +   N+++T+      
Sbjct: 225 DDEHYTTAEDMLQFAIAATQSRTICDITCQPLAIVYDEQGNVHSWDNGNKLLTD----TT 280

Query: 233 KMHNIDGIKTGYTRNSGFNIV 253
             + + G+KTG+T  +GF  +
Sbjct: 281 IPYEVYGMKTGFTDEAGFCFI 301


>gi|255527697|ref|ZP_05394554.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           carboxidivorans P7]
 gi|296185032|ref|ZP_06853442.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           carboxidivorans P7]
 gi|255508610|gb|EET84993.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           carboxidivorans P7]
 gi|296049866|gb|EFG89290.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           carboxidivorans P7]
          Length = 376

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 8/147 (5%)

Query: 128 TEQGIL-ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           T Q ++  L+  S ND++    E +   +  FA  M+ K K++ ++NT +   +GLHD N
Sbjct: 68  TAQDVMDGLLLYSGNDMAYVIAESVGKDDVDFANKMNEKVKQLNLKNTHFVTPNGLHDPN 127

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----IITNHNKLLNKMHNIDGIK 241
             TTA D + +     +N P   +    +K   +       +I N NKLL K   I G K
Sbjct: 128 HYTTAYDLSNIASTAFQN-PWVRETMGKQKNTIKTSSGTSFVIENRNKLLGKNGCIGG-K 185

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           TGYT  +G  +VT        I+ VVM
Sbjct: 186 TGYTSEAGKCLVTVYERDGRKILGVVM 212


>gi|331268991|ref|YP_004395483.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum
           BKT015925]
 gi|329125541|gb|AEB75486.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum
           BKT015925]
          Length = 444

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 121/259 (46%), Gaps = 39/259 (15%)

Query: 35  LFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQDE--PRYPASLTKMMTLYII 89
           +FLS    + A+ L+A P     S+IV+D    ++   K  +  P YPAS TK++T  ++
Sbjct: 14  IFLSFCTTAFAANLNA-PNVVGKSAIVVDAKTGEVIYAKDVDTSPMYPASTTKLLTALLL 72

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPS-------KLYLKEKTYFTTEQGILALITRSAND 142
            E  Q       T I      A++ P        K  LK     + +  +  L+  SAND
Sbjct: 73  AENKQP------TDILTYTDGASKQPEYTLRSFLKGQLKVGDKMSADDAMKGLLLHSAND 126

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK--NQITTARDQAILGIL 200
           ++    + ++G+ + FA +M++K KK+G+ +T +   +GL +   +  T+A D +++G  
Sbjct: 127 IAYMIADNVAGNTENFAKMMNDKIKKLGLTHTHFVTPNGLDNGITDHYTSAYDLSVIGRA 186

Query: 201 LRKNFPQYYKYFSIR--KFRYRNRII---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
             +N     K  +++  K    N ++    N NKLL K           T +S FN  T 
Sbjct: 187 AYEN-EWVRKTMNLKKDKIELTNGVLGYPENRNKLLGK-----------TLDSNFNSKTG 234

Query: 256 LRYKDDPIV-AVVMGMPTS 273
           +  KD P+  AV +G  T 
Sbjct: 235 INIKDVPVSDAVCIGGKTG 253


>gi|300821762|ref|ZP_07101907.1| beta-lactamase [Escherichia coli MS 119-7]
 gi|309793012|ref|ZP_07687440.1| beta-lactamase [Escherichia coli MS 145-7]
 gi|331678083|ref|ZP_08378758.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli H591]
 gi|300525604|gb|EFK46673.1| beta-lactamase [Escherichia coli MS 119-7]
 gi|308123298|gb|EFO60560.1| beta-lactamase [Escherichia coli MS 145-7]
 gi|331074543|gb|EGI45863.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli H591]
          Length = 312

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 45  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 97

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 98  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 156

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 157 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 214

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 215 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 261


>gi|145535902|ref|XP_001453684.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124421406|emb|CAK86287.1| unnamed protein product [Paramecium tetraurelia]
          Length = 395

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 105/229 (45%), Gaps = 12/229 (5%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHL-NTQIPVSKTAATQNPSKLYLKEKT 124
           + GF +      AS+TK+MT ++  +++    L L NT   V + A     +   L+   
Sbjct: 164 LAGFNEKFKCQIASITKIMTCFLSLKFVSLISLDLDNTYFTVPEAAENVGGTSAQLQTGD 223

Query: 125 YFTTEQGILALITRSANDVSTAFGE-FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
                  +  L+  S ND +      F   +   F   M++ AK+ G+++T Y N  GL+
Sbjct: 224 QLNLRDLLYGLMLPSGNDAAVTLKHNFEQTTGINFIDEMNSCAKEFGLKSTQYMNPHGLY 283

Query: 184 DKNQITTARDQAILGI--LLRKNFPQYYK---YFS--IRKFRYRNRIIT-NHNKLLNKMH 235
            K   ++A D  IL    L  ++F    K   YFS  I KF     I+  N NKLL+  +
Sbjct: 284 HKFNYSSALDIGILCFQALQNEHFANIVKTKIYFSEIIDKFGNIKEILWENTNKLLD--N 341

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
              G+KTG T+ +G  +V      ++  + V++   ++  R   A++L+
Sbjct: 342 GFQGVKTGQTKEAGPCVVEYYLDNNNSYIIVLLNCKSTDYRWYDAIQLL 390


>gi|313884857|ref|ZP_07818609.1| serine-type D-Ala-D-Ala carboxypeptidase [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619548|gb|EFR30985.1| serine-type D-Ala-D-Ala carboxypeptidase [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 394

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 115/267 (43%), Gaps = 32/267 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-- 111
           S I ID   N++   ++    YP AS++K+++ Y++++ +   KL ++  I +       
Sbjct: 72  SYIAIDQETNRVLAQQEGNKPYPIASMSKIISTYLVYQAIDEGKLSMDQMISIDPAIIDN 131

Query: 112 -TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            T NP  S + L     ++ E  +  ++  S ND ++A    I GSE+     MS+    
Sbjct: 132 YTSNPNLSNVGLVADQEYSVEDLLNGVLLSSGNDATSALMWQIYGSEEAGVNAMSDLLHS 191

Query: 169 IGMQN----------------TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
            G+ N                 I    +G +D+N ++ A D A++   L  +FPQ     
Sbjct: 192 WGINNFKLVSVSGTPNIELAENIRIPGTGENDENTMSAA-DIALVAQHLITDFPQVLDIT 250

Query: 213 SIRKFRYR-----NRIITNHNKLLNKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           +   ++++      + + N+N L          I G+K+G+T  +G   V +       +
Sbjct: 251 NSDSYQFKAGTDYEQTLVNNNLLRAGQEYGRDGITGLKSGFTDGAGRCFVATSTENGRKV 310

Query: 264 VAVVMGMPTSQERDQKALELITSFLEK 290
           +AV MG  T Q       E++   L K
Sbjct: 311 IAVTMGTFTDQSNSYWETEILLDELLK 337


>gi|331668834|ref|ZP_08369682.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli TA271]
 gi|331064028|gb|EGI35939.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli TA271]
          Length = 313

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 45  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 97

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 98  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 156

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 157 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 214

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 215 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 261


>gi|134094059|ref|YP_001099134.1| D-alanyl-D-alanine-endopeptidase [Herminiimonas arsenicoxydans]
          Length = 400

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 13/237 (5%)

Query: 39  IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKK 97
           I  +SM  +  A     ++VID + +++   K      P AS+TK+MT  ++ E  Q   
Sbjct: 134 IAGLSMTRDALALASSVALVIDQSTSEVLFEKNANVTLPIASITKLMTGLVVVEAQQ--- 190

Query: 98  LHLNTQIPV-SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
             +N  + V ++    +  S   L+  +  +    +   +  S N  ++A G    G  +
Sbjct: 191 -DMNEMLEVTAEDIDREKNSSSRLRVGSQLSRANMLHIALMSSENRAASALGRHYPGGLR 249

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F   M+ KAK +GM+ T Y +++GL   N + +ARD A L ++   N P   +Y +  K
Sbjct: 250 AFVATMNAKAKSLGMRGTHYVDSTGL-SSNNVASARDLAKL-VVEAYNHPILRQYSTDSK 307

Query: 217 FRYR--NRII--TNHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +      R +   N N+L+       GI KTGY   +G  +V     K+ PIV + +
Sbjct: 308 YVVEPGGRALQYANSNRLVTNPDWEIGIQKTGYISEAGRCLVMQTNIKERPIVMIFL 364


>gi|256372037|ref|YP_003109861.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008621|gb|ACU54188.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 414

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 107/245 (43%), Gaps = 47/245 (19%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA- 111
           + ++++  +    +     + P   ASL K+MT  I+       + H     P+  TA+ 
Sbjct: 68  QSATVIPALGSGSLEASPHERPVPIASLAKLMTALIVV------RRH-----PLGSTASG 116

Query: 112 ---TQNPSKLYLKE-------KTYFTT------EQGIL-ALITRSANDVSTAFGEFISGS 154
              T  P+ + L +        T   T      E+ +L AL+ RSAN+++T    +++GS
Sbjct: 117 PTLTMTPADVILSDVDVAEDQSTVPITAGERLNERQLLEALLVRSANNIATILATWVAGS 176

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           E  F   M+  A+ +G+  T + +ASG  +K  ++TARD AI+   +  N P      S 
Sbjct: 177 ESAFVATMNATARTMGLTGTHFADASGF-NKATVSTARDVAIVTARVEDN-PTLAAIASE 234

Query: 215 RKFRYRNRIITNHNKLLNKMHNID-----GIKTGYTRNSGFNIVTSLRYKDDPI-----V 264
                    +     L N +  I      G+K+G+T  SG     ++R    P+     V
Sbjct: 235 HAV-----TLPGAGTLPNIIQAIGTGDVVGVKSGFTIWSGGCASIAVRTP-TPVGELTSV 288

Query: 265 AVVMG 269
            VV+G
Sbjct: 289 GVVIG 293


>gi|300917026|ref|ZP_07133721.1| beta-lactamase [Escherichia coli MS 115-1]
 gi|300415701|gb|EFJ99011.1| beta-lactamase [Escherichia coli MS 115-1]
          Length = 313

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 45  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 97

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 98  TPEMKEVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 156

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 157 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 214

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 215 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 261


>gi|254482177|ref|ZP_05095418.1| D-alanyl-D-alanine carboxypeptidase superfamily protein [marine
           gamma proteobacterium HTCC2148]
 gi|214037502|gb|EEB78168.1| D-alanyl-D-alanine carboxypeptidase superfamily protein [marine
           gamma proteobacterium HTCC2148]
          Length = 278

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 111/225 (49%), Gaps = 20/225 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           S+IV+D + N + G   D  R  AS+TK+MT  ++ +      + L+ ++ ++K    ++
Sbjct: 40  SAIVLDESGNLIYGKDVDTVRPIASITKLMTAMVVLD----SGIGLDEKVTITKE--DRD 93

Query: 115 PSKLYLKEKTYFTT----EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             +L      Y  T    E  +LAL++ S N  +TA G    G  + F   M+ KA+ +G
Sbjct: 94  LVRLTGSRLEYGATLSRREMILLALMS-SENRAATALGRTYPGGMENFLAHMNRKARALG 152

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK---FRYRNR---II 224
           M N+ + + +GL  +N ++TA D A + +   + +    +  + R+   + Y+ R     
Sbjct: 153 MTNSHFADPAGLKKEN-VSTAADLAKM-VTAAEEYALITEATTTRRKDVYPYKGRGNLTY 210

Query: 225 TNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            N N+LL N   +I+  KTGY   +G  +V     + + +  V++
Sbjct: 211 GNTNRLLKNASWDIELSKTGYINEAGRCLVMQANIEGEDVSIVLL 255


>gi|114048686|ref|YP_739236.1| D-alanyl-D-alanine endopeptidase [Shewanella sp. MR-7]
 gi|113890128|gb|ABI44179.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Shewanella sp. MR-7]
          Length = 318

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 100/215 (46%), Gaps = 29/215 (13%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N++      D  R  AS+TK+MT  +  +     KL ++ ++ ++    T+
Sbjct: 53  SALVVDLKTNEILYSSNPDAVRPIASVTKLMTAMVTLD----AKLPMDEKLAIN-INDTK 107

Query: 114 NPSKLYLKEK--TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +Y + +  +  + +  +L  +  S N  + +      G  K F   M+ KAK +GM
Sbjct: 108 EMRGVYSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGHKAFIKAMNAKAKSLGM 167

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-------------FR 218
           +NT Y   +GL +KN +++ARD  +L +   + +P   +  S  K             FR
Sbjct: 168 KNTRYVEPTGLSEKN-VSSARDLVVL-LKASEGYPMLGQLSSTEKKTVTFGKPKYSLDFR 225

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
             NR++   N       NI   KTG+T  +G  +V
Sbjct: 226 NTNRLVYKDN------WNIHLTKTGFTNEAGHCLV 254


>gi|323944951|gb|EGB41016.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H120]
          Length = 314

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 45  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 97

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 98  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 156

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 157 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 214

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 215 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 261


>gi|227486995|ref|ZP_03917311.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227093069|gb|EEI28381.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 402

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 110/248 (44%), Gaps = 16/248 (6%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +S +V D++   +   K    RY PAS+ K++   +  +     +L L   + V+  ++ 
Sbjct: 98  HSFLVFDLDTGDIYAAKDPHGRYRPASIIKVLLASVAID-----RLSLTDSMEVTAESSD 152

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN-KAKKIGM 171
           Q  S   +     +T +  +  L+  S ND + A  + + G E+  A+ M N +A  +G 
Sbjct: 153 QEGSSAGIGPGGRYTVDDLLHGLLMASGNDTAHAIAQLLGGDEE--ALRMVNARALDLGS 210

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR------IIT 225
            +T   + SGL      T+A D A+       + P + +     K+ +          + 
Sbjct: 211 TDTRVASYSGLDSAGMQTSAYDMALF-FTDAWSKPTFREILGTEKYDFPGFKDNPGFEMW 269

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N N++L    N  G KTG+T ++    V ++ +K   + AV++    S++R  +  E + 
Sbjct: 270 NDNRMLFVNENALGGKTGFTDDARHTYVGAMNHKGHRLAAVILDAEASKKRAWEMAEELI 329

Query: 286 SFLEKKTL 293
              + +T+
Sbjct: 330 EATDPETM 337


>gi|113969172|ref|YP_732965.1| D-alanyl-D-alanine endopeptidase [Shewanella sp. MR-4]
 gi|113883856|gb|ABI37908.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Shewanella sp. MR-4]
          Length = 318

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 100/215 (46%), Gaps = 29/215 (13%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N++      D  R  AS+TK+MT  +  +     KL ++ ++ ++    T+
Sbjct: 53  SALVVDLKTNEILYSSNPDAVRPIASVTKLMTAMVTLD----AKLPMDEKLAIN-INDTK 107

Query: 114 NPSKLYLKEK--TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +Y + +  +  + +  +L  +  S N  + +      G  K F   M+ KAK +GM
Sbjct: 108 EMRGVYSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGHKAFIKAMNAKAKALGM 167

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-------------FR 218
           +NT Y   +GL +KN +++ARD  +L +   + +P   +  S  K             FR
Sbjct: 168 KNTRYVEPTGLSEKN-VSSARDLVVL-LKASEGYPMLGQLSSTEKKTVTFGKPKYSLDFR 225

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
             NR++   N       NI   KTG+T  +G  +V
Sbjct: 226 NTNRLVYKDN------WNIHLTKTGFTNEAGHCLV 254


>gi|142817|gb|AAA22375.1| penicillin binding protein 5 [Bacillus subtilis]
          Length = 396

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 110/229 (48%), Gaps = 30/229 (13%)

Query: 70  KQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLN-TQIP---VSKTAATQNPSKLYLKEKT 124
           K  + R P AS+TKMMT Y++ E +   K+  + T  P   V + +   + S + L++  
Sbjct: 10  KNADKRLPIASMTKMMTEYLLLEAIDQGKVKWDQTYTPDDYVYEISQDNSLSNVPLRKDG 69

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
            +T ++   A    SAN  + A  E ++GSE KF   M+ KAK++G+ +  + NA+GL +
Sbjct: 70  KYTVKELYQATAIYSANAAAIAIAEIVAGSETKFVEKMNAKAKELGLTDYKFVNATGLEN 129

Query: 185 KN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----IT 225
           K+                 +A+D A+L   L  ++P+  +  SI K ++R        + 
Sbjct: 130 KDLHGHQPEGTSVNEESEVSAKDMAVLADHLITDYPEILETSSIAKTKFRQGTDDEMDMP 189

Query: 226 NHNKLLN------KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N N +L       K   +DG+KTG T ++G     +       ++ VV+
Sbjct: 190 NWNFMLKGLVSEYKKATVDGLKTGSTDSAGSCFTGTAERNGMRVITVVL 238


>gi|194467015|ref|ZP_03073002.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
           100-23]
 gi|194454051|gb|EDX42948.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
           100-23]
          Length = 417

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 121/274 (44%), Gaps = 37/274 (13%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMT 85
           +I L G  +F  +   + A ++ A+  Y+   ID    Q+   K    RYP AS+ K++T
Sbjct: 22  SICLNGLGMFAKVHADNAAFQMDARAAYA---IDAESGQVLYQKNATKRYPIASVIKILT 78

Query: 86  LYIIFEYLQSKKLHLNTQI----PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           L +I + +++  L  + +I     V+K A   + S + L     +T  Q + +++  SA+
Sbjct: 79  LGVILQDIRNHHLKWDQKIKITPAVAKMADDWHFSNVPLVNGEEYTVRQLVDSMMLVSAD 138

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HDKNQ 187
             + A     +GS   F   M   AKK G+ +    N  GL               D   
Sbjct: 139 GSTEALALADAGSTAAFNKKMMAFAKKAGVTDIKIYNMIGLPNGDLGEHKLKGVDKDAEN 198

Query: 188 ITTARDQAILGILLRKNFP-------QYYKYFSIRKFRYRNRIITNHNKLLN------KM 234
           + +A+D A++   L + +P       Q +  F + K   +  ++TN N LL       K 
Sbjct: 199 LLSAKDVALISKYLVEQYPETLDITKQKFANFDVTK--DQQYLMTNVNALLPQNGFAPKN 256

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             IDG+KTG T  +G  IV++  +    I+ V +
Sbjct: 257 GEIDGLKTGNTDRAGKCIVSTGTFAGRRIILVAL 290


>gi|117921730|ref|YP_870922.1| D-alanyl-D-alanine endopeptidase [Shewanella sp. ANA-3]
 gi|117614062|gb|ABK49516.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Shewanella sp. ANA-3]
          Length = 318

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 100/215 (46%), Gaps = 29/215 (13%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N++      D  R  AS+TK+MT  +  +     KL ++ ++ ++    T+
Sbjct: 53  SALVVDLKTNEILYSSNPDAVRPIASVTKLMTAMVTLD----AKLPMDEKLAIN-INDTK 107

Query: 114 NPSKLYLKEK--TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +Y + +  +  + +  +L  +  S N  + +      G  K F   M+ KAK +GM
Sbjct: 108 EMRGVYSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGHKAFIKAMNAKAKALGM 167

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-------------FR 218
           +NT Y   +GL +KN +++ARD  +L +   + +P   +  S  K             FR
Sbjct: 168 KNTRYVEPTGLSEKN-VSSARDLVVL-LKASEGYPMLGQLSSTEKKTVTFGKPKYSLDFR 225

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
             NR++   N       NI   KTG+T  +G  +V
Sbjct: 226 NTNRLVYKDN------WNIHLTKTGFTNEAGHCLV 254


>gi|227432858|ref|ZP_03914813.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227351385|gb|EEJ41656.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 251

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 102/219 (46%), Gaps = 29/219 (13%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI-PVSKT---AATQNPSKLYLKEKTYFTT 128
           +P   AS++K+MT Y++      KKL L TQ+ P S T       N + + L     ++ 
Sbjct: 16  KPLAIASISKLMTGYLVL-----KKLPLGTQVQPSSNTMKIGEESNLASVNLVSNQSYSA 70

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           ++ + A +  SAND + A G+ +SGS+ KF  LM+  ++  G+ +  + NA+G+ +   +
Sbjct: 71  DELLRAALQLSANDAAIALGDQVSGSQTKFVKLMTKTSQSWGLASAQWYNAAGIRNDEAM 130

Query: 189 T-------------TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL---- 231
                         +A D A++   + +  P+  +     + ++ + I  + N +L    
Sbjct: 131 DDDVKAPDNAENKMSAVDVALMTDNILEKTPRIKRIVHQSQNQF-DGITQDSNYVLMKNY 189

Query: 232 --NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             N  + + G K G +  SG + V    YK    + VV+
Sbjct: 190 FKNTKYTVTGAKLGISVKSGVSYVGLFTYKGKHYITVVL 228


>gi|116619089|ref|YP_819460.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|116097936|gb|ABJ63087.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 299

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 100/214 (46%), Gaps = 29/214 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQI-PVSKT---AATQNPSKLYLKEKTYFTTEQGIL 133
           AS++K+MT Y++      KKL L TQ+ P S T       N + + L     ++ ++ + 
Sbjct: 69  ASISKLMTGYLVL-----KKLPLGTQVQPSSNTMKIGEESNLASVNLDSNQSYSADELLR 123

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT---- 189
           A +  SAND + A G+ +SGS+ KF  LM+  ++  G+ +  + NA+G+ +   +     
Sbjct: 124 AALQLSANDAAIALGDQVSGSQTKFVKLMTKTSQSWGLASAQWYNAAGIRNDEAMDDGVK 183

Query: 190 ---------TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL------NKM 234
                    +A D A++   + +  P+  +     + ++ + I  + N +L      N  
Sbjct: 184 APDNAENKMSAVDVALMTDNILEKTPRIKRIVHQSQNQF-DGITQDSNYVLMKNYFKNTK 242

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           + + G K G +  SG + V    YK    + VV+
Sbjct: 243 YTVTGAKLGISVKSGVSYVGLFTYKGKHYITVVL 276


>gi|312973616|ref|ZP_07787788.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 1827-70]
 gi|310332211|gb|EFP99446.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 1827-70]
 gi|323176971|gb|EFZ62561.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 1180]
          Length = 311

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 94

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 95  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 153

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 154 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 211

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 212 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 258


>gi|323968053|gb|EGB63463.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli M863]
          Length = 313

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 103/232 (44%), Gaps = 33/232 (14%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 45  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 97

Query: 114 NPSKLYLKEKTYFTTE----QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +  +    +E    + +L  +  S N  + +      G  K F   M+ KAK +
Sbjct: 98  TPEMKGVYSRVRLNSEISRKEMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSL 157

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------- 216
           GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+             
Sbjct: 158 GMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTLP 215

Query: 217 FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 216 FRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 261


>gi|125554420|gb|EAZ00026.1| hypothetical protein OsI_22026 [Oryza sativa Indica Group]
          Length = 307

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 102/233 (43%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS+TK+MT  ++ +      L L+ ++   K   + 
Sbjct: 43  SAMIVDLNTNKVIYASHPDLVRPIASITKLMTAMVVLD----AHLPLDEKL---KVDISH 95

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G    F   M+ KAK 
Sbjct: 96  TPEMKGIYSRVRLNSEISRKNMLLLALMS-SENRAAASLAHHYPGGYDAFIRAMNAKAKA 154

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT Y   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 155 LGMNNTHYVEPTGL-SINNVSTARDLTKL-LIASKQYPLIGQLSTTREEMATFANPAYTL 212

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V    +   P+  VVM
Sbjct: 213 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVFNGKPVALVVM 259


>gi|191165362|ref|ZP_03027204.1| penicillin-binding protein 7 [Escherichia coli B7A]
 gi|190904525|gb|EDV64232.1| penicillin-binding protein 7 [Escherichia coli B7A]
          Length = 313

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 104/236 (44%), Gaps = 41/236 (17%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS---KTA 110
           S++++D+N N++      D  R  AS++K+MT  ++          LN ++P+    K  
Sbjct: 45  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVV----------LNARLPLDEKLKVD 94

Query: 111 ATQNPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
            +Q P    +  +    +E       +LAL++ S N  + +      G  K F   M+ K
Sbjct: 95  ISQTPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAK 153

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--------- 216
           AK +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+         
Sbjct: 154 AKSLGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPT 211

Query: 217 ----FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
               FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 212 YTLPFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 261


>gi|302532678|ref|ZP_07285020.1| LOW QUALITY PROTEIN: penicillin binding protein PbpA [Streptomyces
           sp. C]
 gi|302441573|gb|EFL13389.1| LOW QUALITY PROTEIN: penicillin binding protein PbpA [Streptomyces
           sp. C]
          Length = 422

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 87/200 (43%), Gaps = 9/200 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAATQNPSKLY 119
           V    +    + +P   AS+ K+MT Y+I +    +K     +I   +K  A  N S   
Sbjct: 74  VGSGTIGTVGEQKPMPTASVAKIMTAYVILKGHPLRKNEPGPKIEADAKAVAEGNASSES 133

Query: 120 ----LKEKTYFTTEQGILALITRSANDVSTAFGEF-ISGSEKKFAILMSNKAKKIGMQNT 174
               L     F+    I  L+  SAN+++     +   G E  F   M+  AK++GM NT
Sbjct: 134 RIEGLTAGQKFSQLDMIKMLMIPSANNIARLLARWDTGGDEAAFVAKMNAAAKELGMTNT 193

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSIRKFRYRNRIITNHNKLLN 232
            Y + SGL D   ++TA DQ  L   + K+  F       S         +I N+  LL 
Sbjct: 194 TYTDPSGL-DAGTVSTAVDQLKLAEAVMKDDAFRTVVAMPSAPIEGLSKPLINNNGSLLL 252

Query: 233 KMHNIDGIKTGYTRNSGFNI 252
              NI+GIKTG +  +G  +
Sbjct: 253 AGLNINGIKTGSSTPAGGTL 272


>gi|332093252|gb|EGI98312.1| D-alanyl-D-alanine endopeptidase [Shigella boydii 5216-82]
          Length = 310

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 94

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 95  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 153

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 154 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 211

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 212 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 258


>gi|323972881|gb|EGB68079.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TA007]
          Length = 314

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 45  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 97

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 98  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 156

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 157 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 214

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 215 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 261


>gi|320528533|ref|ZP_08029690.1| serine-type D-Ala-D-Ala carboxypeptidase [Solobacterium moorei
           F0204]
 gi|320131119|gb|EFW23692.1| serine-type D-Ala-D-Ala carboxypeptidase [Solobacterium moorei
           F0204]
          Length = 398

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 118/267 (44%), Gaps = 40/267 (14%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           I +D +  Q ++  KQDE    ASLTKMMT+ +  E   S    LN  + ++     +  
Sbjct: 45  IFLDADTGQVLSAKKQDEQISIASLTKMMTVLLAIENSSS----LNQTVTITD----EMI 96

Query: 116 SKLYLKEKT---YFTTEQGILALITRSANDVSTAFGEF-----ISGSEKKFAILMSNKAK 167
             LY ++ +   Y   +   L  +  +A   S A         I GS +KF  +M++KA 
Sbjct: 97  DGLYDEQASVAGYINGDTATLLDLCYAAAVPSAADAANALAIQIGGSFEKFYQMMNDKAA 156

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYR----- 220
           ++GM +T++K+A GL    Q +T  D   +  LLR     P + + FS +++  +     
Sbjct: 157 QLGMDHTVFKSAHGLDRDGQYSTVED---ISKLLRYALQNPTFKEIFSTKEYTTQATAYY 213

Query: 221 -------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                  + I    +     + N+ G KTGYT  +G  I       D  I+AV  G  T+
Sbjct: 214 PFGIPLASTIWAYADTYGYNLTNLSGGKTGYTLQAGRCIAYWATVNDMTIIAVTAGASTN 273

Query: 274 QER------DQKALELITSFLEKKTLK 294
            E+       Q  L  + S+ +K  LK
Sbjct: 274 VEQYSNLSDAQTVLTSLASWQKKTILK 300


>gi|152987366|ref|YP_001349992.1| D-alanyl-D-alanine endopeptidase [Pseudomonas aeruginosa PA7]
 gi|150962524|gb|ABR84549.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa PA7]
          Length = 310

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 105/223 (47%), Gaps = 15/223 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V D N  ++   +  +   P AS+TK+MT  ++ +     KL L+  +P++ +  ++
Sbjct: 41  SALVTDQNSGKVLYSRNPDLVVPIASITKLMTAMVVLD----SKLPLDEVLPIAISETSE 96

Query: 114 NPSKL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  ++  +  +    +L  +  S N  + +  +   G +  F   M+ KA  +GM+
Sbjct: 97  MRGVFSRVRVGSQISRRDMLLLALMSSENRAAASLAQNYPGGKNAFVKAMNAKAHALGMK 156

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT--N 226
           NT Y   +GL   N ++TARD   L ++  + +P   ++ +  +    FR+ N  +   N
Sbjct: 157 NTRYVEPTGLSLHN-VSTARDLTRL-LVASRQYPLLSQWSTTPEKTVAFRHPNYTLGFRN 214

Query: 227 HNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            N L+ NK  NI   KTG+T  +G  +         P+  VV+
Sbjct: 215 TNHLINNKTWNIQLTKTGFTNEAGHCLAMRTTINRSPVNLVVL 257


>gi|329116466|ref|ZP_08245183.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parauberis
           NCFD 2020]
 gi|326906871|gb|EGE53785.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parauberis
           NCFD 2020]
          Length = 412

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 113/239 (47%), Gaps = 26/239 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           S+I  D+   ++   K  +   P AS TK++T Y++++ ++  KL  ++ + +S    + 
Sbjct: 31  SAIAFDIESGKVLYEKNAKKILPVASATKVLTTYMVYKEIEQGKLEWSSPVTISDYPFQL 90

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S + L  + Y T +Q + A++  +AN  + A  E I G+E  F   M  + +  
Sbjct: 91  TTNYTISNVPLDARKY-TVKQLMKAMLVTNANSAAIALAEKIGGTEPIFVDKMKKQLEVW 149

Query: 170 GMQNTIYKNASGLHD---------------KNQITTARDQAILGILLRKNFPQYYKYFSI 214
           G+ +    NA+GL +               +N++ +A+D AI+   L   +P+  KY S+
Sbjct: 150 GINDAKLYNATGLPNSILGDNIYPKSKQSAENKL-SAKDLAIITHHLLTEYPEVLKYTSL 208

Query: 215 RKFRYRNRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            K  +  + I ++N +L     +   I+G+  G    SG   + S +     ++++V+G
Sbjct: 209 PKATFDGQDIYSYNYMLEGYPYERVGINGLFLGSPEKSGPTFIASSKINKMKVISIVIG 267


>gi|172058567|ref|YP_001815027.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Exiguobacterium sibiricum 255-15]
 gi|171991088|gb|ACB62010.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Exiguobacterium sibiricum 255-15]
          Length = 421

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 1/120 (0%)

Query: 75  RYPASLTKMMTLYIIFEYL-QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           RYPAS TK++T  + ++   Q   L     +  S  A     S    +     T  Q + 
Sbjct: 204 RYPASTTKLLTAIVAYDAAAQKGTLDQTFTLTYSMLAVPSGSSTAGFRSGDKVTMRQLLN 263

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            ++ RS ND + A     +GSE KF  LM+++A +IGM  + + N  G +  +  TTA D
Sbjct: 264 GMLIRSGNDAAKAIAVRTAGSESKFVSLMNSRASRIGMSASHFMNPHGFYHPSHYTTAAD 323


>gi|323168727|gb|EFZ54407.1| D-alanyl-D-alanine endopeptidase [Shigella sonnei 53G]
          Length = 298

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 29  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 81

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 82  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 140

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 141 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 198

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 199 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 245


>gi|327253261|gb|EGE64915.1| D-alanyl-D-alanine endopeptidase [Escherichia coli STEC_7v]
          Length = 310

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 103/232 (44%), Gaps = 33/232 (14%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 94

Query: 114 NPSKLYLKEKTYFTTE----QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +  +    +E    + +L  +  S N  + +      G  K F   M+ KAK +
Sbjct: 95  TPEMKGVYSRVRLNSEISRKEMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSL 154

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------- 216
           GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+             
Sbjct: 155 GMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTLP 212

Query: 217 FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 213 FRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 258


>gi|333002850|gb|EGK22406.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri K-272]
 gi|333016854|gb|EGK36178.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri K-227]
          Length = 311

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 94

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 95  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 153

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 154 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 211

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 212 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 258


>gi|260844741|ref|YP_003222519.1| D-alanyl-D-alanine endopeptidase PbpG [Escherichia coli O103:H2
           str. 12009]
 gi|257759888|dbj|BAI31385.1| D-alanyl-D-alanine endopeptidase PbpG [Escherichia coli O103:H2
           str. 12009]
          Length = 310

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 94

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 95  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 153

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 154 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 211

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 212 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 258


>gi|215487356|ref|YP_002329787.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215265428|emb|CAS09829.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 310

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 94

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 95  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 153

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 154 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 211

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 212 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 258


>gi|195935505|ref|ZP_03080887.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str.
           EC4024]
 gi|209919593|ref|YP_002293677.1| D-alanyl-D-alanine endopeptidase [Escherichia coli SE11]
 gi|218554700|ref|YP_002387613.1| D-alanyl-D-alanine endopeptidase [Escherichia coli IAI1]
 gi|218695746|ref|YP_002403413.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 55989]
 gi|218699256|ref|YP_002406885.1| D-alanyl-D-alanine endopeptidase [Escherichia coli IAI39]
 gi|218705663|ref|YP_002413182.1| D-alanyl-D-alanine endopeptidase [Escherichia coli UMN026]
 gi|254794027|ref|YP_003078864.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str.
           TW14359]
 gi|260856108|ref|YP_003229999.1| D-alanyl-D-alanine endopeptidase PbpG [Escherichia coli O26:H11
           str. 11368]
 gi|260868837|ref|YP_003235239.1| D-alanyl-D-alanine endopeptidase PbpG [Escherichia coli O111:H-
           str. 11128]
 gi|307311286|ref|ZP_07590930.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Escherichia
           coli W]
 gi|209912852|dbj|BAG77926.1| penicillin-binding protein 7 [Escherichia coli SE11]
 gi|218352478|emb|CAU98255.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 55989]
 gi|218361468|emb|CAQ99057.1| D-alanyl-D-alanine endopeptidase [Escherichia coli IAI1]
 gi|218369242|emb|CAR16999.1| D-alanyl-D-alanine endopeptidase [Escherichia coli IAI39]
 gi|218432760|emb|CAR13654.1| D-alanyl-D-alanine endopeptidase [Escherichia coli UMN026]
 gi|226237489|dbj|BAH47011.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O55:H7]
 gi|254593427|gb|ACT72788.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str.
           TW14359]
 gi|257754757|dbj|BAI26259.1| D-alanyl-D-alanine endopeptidase PbpG [Escherichia coli O26:H11
           str. 11368]
 gi|257765193|dbj|BAI36688.1| D-alanyl-D-alanine endopeptidase PbpG [Escherichia coli O111:H-
           str. 11128]
 gi|306908792|gb|EFN39289.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Escherichia
           coli W]
 gi|320641200|gb|EFX10678.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str.
           G5101]
 gi|320646588|gb|EFX15499.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H- str.
           493-89]
 gi|320651843|gb|EFX20218.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H- str. H
           2687]
 gi|320663173|gb|EFX30482.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667924|gb|EFX34827.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323152361|gb|EFZ38650.1| D-alanyl-D-alanine endopeptidase [Escherichia coli EPECa14]
 gi|323161762|gb|EFZ47643.1| D-alanyl-D-alanine endopeptidase [Escherichia coli E128010]
 gi|323184242|gb|EFZ69619.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 1357]
 gi|323377974|gb|ADX50242.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Escherichia
           coli KO11]
 gi|332092625|gb|EGI97696.1| D-alanyl-D-alanine endopeptidase [Shigella dysenteriae 155-74]
          Length = 310

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 94

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 95  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 153

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 154 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 211

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 212 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 258


>gi|187732796|ref|YP_001879537.1| D-alanyl-D-alanine endopeptidase [Shigella boydii CDC 3083-94]
 gi|187429788|gb|ACD09062.1| penicillin-binding protein 7 [Shigella boydii CDC 3083-94]
          Length = 313

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 45  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 97

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 98  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 156

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 157 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMAIFSNPTYTL 214

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 215 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 261


>gi|170767319|ref|ZP_02901772.1| penicillin-binding protein 7 [Escherichia albertii TW07627]
 gi|170123653|gb|EDS92584.1| penicillin-binding protein 7 [Escherichia albertii TW07627]
          Length = 312

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 45  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 97

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 98  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 156

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 157 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIATKQYPLIGQLSTTREDMATFSNPTYTL 214

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 215 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 261


>gi|291530580|emb|CBK96165.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum 70/3]
          Length = 734

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 91/214 (42%), Gaps = 27/214 (12%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-----NPSKLYLKEKTYFTTEQG 131
           PA L K+M   I  E     K + N  + VS +   Q       + + L+     +    
Sbjct: 42  PAFLIKIMASIIALE-----KCNPNDTVTVSDSVIKQISNWKGSASINLEAGEKISVLDL 96

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           I +++  SAND   A  EFI GS  KFA++M  KAK IG  +T    A G     Q + A
Sbjct: 97  IYSMMLVSANDSLFALAEFICGSLDKFAVMMQEKAKSIGAADTTITTADGRFTAEQYSNA 156

Query: 192 RDQAILGILLRKN-----FPQYYKYFSIRKFRYRNRIITNHNKLLN------KMHNIDGI 240
            D AI+      N          KY      +  +R + N N L+N      +     GI
Sbjct: 157 YDLAIICRYCMTNRMFRTIAATDKYTIPATNKNGSRDLQNTNLLINSGNRRYRYETAIGI 216

Query: 241 KTGYTRNSGFNIVTSL-----RYKDDPIVAVVMG 269
           K+GYT  S   +  S      ++ ++ ++A+++G
Sbjct: 217 KSGYTARSKSCLACSALPPANKFGEE-VLAIILG 249


>gi|82543546|ref|YP_407493.1| D-alanyl-D-alanine endopeptidase [Shigella boydii Sb227]
 gi|81244957|gb|ABB65665.1| penicillin-binding protein 7 [Shigella boydii Sb227]
 gi|320184846|gb|EFW59636.1| Murein-DD-endopeptidase [Shigella flexneri CDC 796-83]
          Length = 313

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 45  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 97

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 98  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 156

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 157 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 214

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 215 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 261


>gi|331673660|ref|ZP_08374423.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli TA280]
 gi|331068933|gb|EGI40325.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli TA280]
          Length = 324

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 45  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 97

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 98  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 156

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 157 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 214

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 215 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 261


>gi|227485595|ref|ZP_03915911.1| D-alanyl-D-alanine carboxypeptidase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236461|gb|EEI86476.1| D-alanyl-D-alanine carboxypeptidase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 289

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 92/218 (42%), Gaps = 20/218 (9%)

Query: 70  KQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKT 124
           K +  R P ASLTK+MT+ +  ++++     L    PV   A       N S        
Sbjct: 52  KNENERLPMASLTKIMTVRVALKHIRD----LGQIAPVDTDAYYRAVEMNASMAGFNGGE 107

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
             T    + A + RSA + + +    ISGS  KF  LM+ +AK + ++NT Y NA G+ +
Sbjct: 108 TTTYRDLLYATMLRSAGEAADSLAINISGSMDKFVDLMNQEAKDLKLKNTSYANADGMDN 167

Query: 185 KNQITTARDQAIL-----------GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
            +   +A+D A+L            I  +K+F               + I  +  K    
Sbjct: 168 PSNYQSAKDCAMLIKDSLKDGNFRAIFTKKDFKTSPTVNHPDGVYLESTIFYHLKKYQQN 227

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
              I G K+G T ++G    T     +   + VVMG+P
Sbjct: 228 GFEIIGGKSGTTDDAGLCWATLAVKNNKEYILVVMGVP 265


>gi|332754764|gb|EGJ85129.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri 4343-70]
          Length = 301

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 32  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 84

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 85  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 143

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 144 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 201

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 202 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 248


>gi|118398512|ref|XP_001031584.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila]
 gi|89285915|gb|EAR83921.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila SB210]
          Length = 617

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 101/241 (41%), Gaps = 50/241 (20%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLH-LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           R  ASLTK+MTLY+  + +Q+  +    T + VSK AA+ N +   L E    +    + 
Sbjct: 354 RQMASLTKIMTLYVSLKVIQALDISPFRTYVEVSKKAASMNGTSARLIEGDRLSLWDLMH 413

Query: 134 ALITRSANDVSTAFGE-----------------------------FISGSEKKFAILMSN 164
            ++  S ND +TA  E                              +  S+  F   M+ 
Sbjct: 414 GMMLPSGNDAATALAENLGVFLYYQSEEYKLQYQQNPQQFQNEKFRVKNSQGYFINQMNK 473

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK------------NFPQYYKYF 212
            A  + + NT + N +GL +    +TA D A L   L K            +F Q Y   
Sbjct: 474 YAHNLQLNNTHFANPTGLVNNFNRSTAADLAKLSYHLIKEEQVKKIVECKYHFAQIY--- 530

Query: 213 SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            +   + R+ I  N NKLL+  H   G+KTG T  +G     S  YKDD +  +++ + +
Sbjct: 531 -MNNNKKRSVIFENTNKLLS--HGYSGLKTGITTAAG--PCLSAWYKDDQVNLIIILLNS 585

Query: 273 S 273
           S
Sbjct: 586 S 586


>gi|82777384|ref|YP_403733.1| D-alanyl-D-alanine endopeptidase [Shigella dysenteriae Sd197]
 gi|157159398|ref|YP_001463481.1| D-alanyl-D-alanine endopeptidase [Escherichia coli E24377A]
 gi|161485895|ref|NP_708035.2| D-alanyl-D-alanine endopeptidase [Shigella flexneri 2a str. 301]
 gi|161486468|ref|NP_837752.2| D-alanyl-D-alanine endopeptidase [Shigella flexneri 2a str. 2457T]
 gi|170679983|ref|YP_001742990.1| D-alanyl-D-alanine endopeptidase [Escherichia coli SMS-3-5]
 gi|194436191|ref|ZP_03068293.1| penicillin-binding protein 7 [Escherichia coli 101-1]
 gi|253772938|ref|YP_003035769.1| D-alanyl-D-alanine endopeptidase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|293415418|ref|ZP_06658061.1| D-alanyl-D-alanine endopeptidase [Escherichia coli B185]
 gi|300818866|ref|ZP_07099071.1| beta-lactamase [Escherichia coli MS 107-1]
 gi|300924491|ref|ZP_07140460.1| beta-lactamase [Escherichia coli MS 182-1]
 gi|300929309|ref|ZP_07144783.1| beta-lactamase [Escherichia coli MS 187-1]
 gi|300936551|ref|ZP_07151460.1| beta-lactamase [Escherichia coli MS 21-1]
 gi|300955844|ref|ZP_07168185.1| beta-lactamase [Escherichia coli MS 175-1]
 gi|301021100|ref|ZP_07185141.1| beta-lactamase [Escherichia coli MS 69-1]
 gi|301325244|ref|ZP_07218762.1| beta-lactamase [Escherichia coli MS 78-1]
 gi|301644151|ref|ZP_07244159.1| beta-lactamase [Escherichia coli MS 146-1]
 gi|331642758|ref|ZP_08343893.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli H736]
 gi|331647786|ref|ZP_08348878.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli M605]
 gi|331653562|ref|ZP_08354563.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli M718]
 gi|332278712|ref|ZP_08391125.1| conserved hypothetical protein [Shigella sp. D9]
 gi|405864|gb|AAA60496.1| yohB [Escherichia coli]
 gi|81241532|gb|ABB62242.1| penicillin-binding protein 7 [Shigella dysenteriae Sd197]
 gi|157081428|gb|ABV21136.1| penicillin-binding protein 7 [Escherichia coli E24377A]
 gi|170517701|gb|ACB15879.1| penicillin-binding protein 7 [Escherichia coli SMS-3-5]
 gi|194424919|gb|EDX40904.1| penicillin-binding protein 7 [Escherichia coli 101-1]
 gi|253323982|gb|ACT28584.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|260448770|gb|ACX39192.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Escherichia
           coli DH1]
 gi|281601593|gb|ADA74577.1| D-alanyl-D-alanine endopeptidase precursor [Shigella flexneri
           2002017]
 gi|291433066|gb|EFF06045.1| D-alanyl-D-alanine endopeptidase [Escherichia coli B185]
 gi|300317311|gb|EFJ67095.1| beta-lactamase [Escherichia coli MS 175-1]
 gi|300398281|gb|EFJ81819.1| beta-lactamase [Escherichia coli MS 69-1]
 gi|300419300|gb|EFK02611.1| beta-lactamase [Escherichia coli MS 182-1]
 gi|300458314|gb|EFK21807.1| beta-lactamase [Escherichia coli MS 21-1]
 gi|300462728|gb|EFK26221.1| beta-lactamase [Escherichia coli MS 187-1]
 gi|300528485|gb|EFK49547.1| beta-lactamase [Escherichia coli MS 107-1]
 gi|300847904|gb|EFK75664.1| beta-lactamase [Escherichia coli MS 78-1]
 gi|301077449|gb|EFK92255.1| beta-lactamase [Escherichia coli MS 146-1]
 gi|315136767|dbj|BAJ43926.1| D-alanyl-D-alanine endopeptidase [Escherichia coli DH1]
 gi|320196004|gb|EFW70628.1| Murein-DD-endopeptidase [Escherichia coli WV_060327]
 gi|323961642|gb|EGB57247.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H489]
 gi|323977677|gb|EGB72763.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TW10509]
 gi|324114448|gb|EGC08417.1| D-alanyl-D-alanine carboxypeptidase [Escherichia fergusonii B253]
 gi|325497949|gb|EGC95808.1| D-alanyl-D-alanine endopeptidase [Escherichia fergusonii ECD227]
 gi|330911967|gb|EGH40477.1| murein-DD-endopeptidase [Escherichia coli AA86]
 gi|331039556|gb|EGI11776.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli H736]
 gi|331043510|gb|EGI15648.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli M605]
 gi|331048411|gb|EGI20487.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli M718]
 gi|332101064|gb|EGJ04410.1| conserved hypothetical protein [Shigella sp. D9]
 gi|744172|prf||2014253AF yohB gene
          Length = 313

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 45  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 97

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 98  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 156

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 157 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 214

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 215 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 261


>gi|254384371|ref|ZP_04999713.1| penicillin binding protein PbpA [Streptomyces sp. Mg1]
 gi|194343258|gb|EDX24224.1| penicillin binding protein PbpA [Streptomyces sp. Mg1]
          Length = 428

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 12/191 (6%)

Query: 69  FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLY-LKEK 123
           F + +P   AS+ K+MT Y+I +    +      QI +   A    A+++ S++  L   
Sbjct: 87  FGEQKPVPTASVAKVMTAYVILKSHPLRGGDPGPQIEIDAKAVADGASEHESRVEGLVAG 146

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNASG 181
           T F+ +  +  L+  SAN+V+     + SG  SE  F   M+  A+++GM NT Y + SG
Sbjct: 147 TKFSQQDMLKMLMIPSANNVARLLARWDSGTDSEAAFVEKMNAAARELGMTNTTYTDPSG 206

Query: 182 LHDKNQITTARDQAILG-ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL--NKMHNID 238
           L D   ++TA DQ  L   ++++   +        + +  +  + N+N LL  N + +I 
Sbjct: 207 L-DAATVSTAADQLKLADAVMKEEAFRAVVALPSAEIKGLSTPLYNNNTLLTVNGL-SIR 264

Query: 239 GIKTGYTRNSG 249
           GIKTG +  +G
Sbjct: 265 GIKTGSSTPAG 275


>gi|331683812|ref|ZP_08384408.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli H299]
 gi|331078764|gb|EGI49966.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli H299]
          Length = 313

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 45  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 97

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 98  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 156

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 157 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 214

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 215 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 261


>gi|300215120|gb|ADJ79536.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           salivarius CECT 5713]
          Length = 384

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 113/256 (44%), Gaps = 37/256 (14%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A ++ AK  Y   +ID    Q+   +    +YP ASLTK++TL +I + + ++KL  + +
Sbjct: 30  ADKIDAKAAY---MIDAGTGQVLYQQNANSKYPIASLTKILTLAVIMKDIHNQKLSWDQK 86

Query: 104 IPVSKT----AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           I V+K     A     S + L E   +T +  + +++  SA+  + A     +GS K F 
Sbjct: 87  IKVNKDVSDMANNWQYSNVQLNEGESYTVKSLVESMMIVSADGSTEALALADAGSVKAFN 146

Query: 160 ILMSNKAKKIGMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNF 205
             M   A + G+ +    N  GL               D+    +A+D A++   L  N+
Sbjct: 147 EKMKEVAHEAGVTDAEIYNMIGLPNSDLGNLKLKNVGDDQENKFSAKDIALISKYLVNNY 206

Query: 206 PQYYKY-------FSIRKFRYRNRIITNHNKLLN------KMHNIDGIKTGYTRNSGFNI 252
           P+           F I   +  N  + N N +L       K   IDG+KTG+T  +G+  
Sbjct: 207 PEVIDITKQKNVDFKISADQTYN--MENINYMLEGSYAAPKNGTIDGLKTGFTDEAGYCF 264

Query: 253 VTSLRYKDDPIVAVVM 268
           V +  +    ++ V++
Sbjct: 265 VGTGTFNGQRVITVIL 280


>gi|15802684|ref|NP_288711.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 EDL933]
 gi|15832275|ref|NP_311048.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str.
           Sakai]
 gi|74312658|ref|YP_311077.1| D-alanyl-D-alanine endopeptidase [Shigella sonnei Ss046]
 gi|157161616|ref|YP_001458934.1| D-alanyl-D-alanine endopeptidase [Escherichia coli HS]
 gi|168764225|ref|ZP_02789232.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4501]
 gi|168771600|ref|ZP_02796607.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4486]
 gi|168777288|ref|ZP_02802295.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4196]
 gi|168783704|ref|ZP_02808711.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4076]
 gi|170019548|ref|YP_001724502.1| D-alanyl-D-alanine endopeptidase [Escherichia coli ATCC 8739]
 gi|188025021|ref|ZP_02775528.2| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4113]
 gi|188491726|ref|ZP_02998996.1| penicillin-binding protein 7 [Escherichia coli 53638]
 gi|189402480|ref|ZP_02782715.2| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4401]
 gi|189405204|ref|ZP_02813943.2| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC869]
 gi|189406078|ref|ZP_02826192.2| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC508]
 gi|193062314|ref|ZP_03043409.1| penicillin-binding protein 7 [Escherichia coli E22]
 gi|194427101|ref|ZP_03059652.1| penicillin-binding protein 7 [Escherichia coli B171]
 gi|194431501|ref|ZP_03063793.1| penicillin-binding protein 7 [Shigella dysenteriae 1012]
 gi|208809227|ref|ZP_03251564.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4206]
 gi|208813477|ref|ZP_03254806.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4045]
 gi|208818552|ref|ZP_03258872.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4042]
 gi|209396832|ref|YP_002271537.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4115]
 gi|217327143|ref|ZP_03443226.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str.
           TW14588]
 gi|261223412|ref|ZP_05937693.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261259038|ref|ZP_05951571.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283382|ref|YP_003500200.1| Penicillin-binding protein 7 [Escherichia coli O55:H7 str. CB9615]
 gi|293405603|ref|ZP_06649595.1| pbpG [Escherichia coli FVEC1412]
 gi|293410496|ref|ZP_06654072.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293446485|ref|ZP_06662907.1| D-alanyl-D-alanine endopeptidase [Escherichia coli B088]
 gi|298381285|ref|ZP_06990884.1| pbpG [Escherichia coli FVEC1302]
 gi|300901247|ref|ZP_07119348.1| beta-lactamase [Escherichia coli MS 198-1]
 gi|300948233|ref|ZP_07162354.1| beta-lactamase [Escherichia coli MS 116-1]
 gi|331663631|ref|ZP_08364541.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli TA143]
 gi|12516442|gb|AAG57266.1|AE005445_3 penicillin-binding protein 7 [Escherichia coli O157:H7 str. EDL933]
 gi|13362490|dbj|BAB36444.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. Sakai]
 gi|73856135|gb|AAZ88842.1| penicillin-binding protein 7 [Shigella sonnei Ss046]
 gi|157067296|gb|ABV06551.1| penicillin-binding protein 7 [Escherichia coli HS]
 gi|169754476|gb|ACA77175.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Escherichia
           coli ATCC 8739]
 gi|187767413|gb|EDU31257.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4196]
 gi|188015308|gb|EDU53430.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4113]
 gi|188486925|gb|EDU62028.1| penicillin-binding protein 7 [Escherichia coli 53638]
 gi|188999045|gb|EDU68031.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4076]
 gi|189355332|gb|EDU73751.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4401]
 gi|189359688|gb|EDU78107.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4486]
 gi|189365744|gb|EDU84160.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4501]
 gi|189371364|gb|EDU89780.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC869]
 gi|189376656|gb|EDU95072.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC508]
 gi|192931980|gb|EDV84579.1| penicillin-binding protein 7 [Escherichia coli E22]
 gi|194414722|gb|EDX30993.1| penicillin-binding protein 7 [Escherichia coli B171]
 gi|194420326|gb|EDX36403.1| penicillin-binding protein 7 [Shigella dysenteriae 1012]
 gi|208729028|gb|EDZ78629.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4206]
 gi|208734754|gb|EDZ83441.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4045]
 gi|208738675|gb|EDZ86357.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4042]
 gi|209158232|gb|ACI35665.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4115]
 gi|209766398|gb|ACI81511.1| penicillin-binding protein 7 [Escherichia coli]
 gi|209766400|gb|ACI81512.1| penicillin-binding protein 7 [Escherichia coli]
 gi|209766402|gb|ACI81513.1| penicillin-binding protein 7 [Escherichia coli]
 gi|209766404|gb|ACI81514.1| penicillin-binding protein 7 [Escherichia coli]
 gi|209766406|gb|ACI81515.1| penicillin-binding protein 7 [Escherichia coli]
 gi|217319510|gb|EEC27935.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str.
           TW14588]
 gi|284922120|emb|CBG35201.1| penicillin-binding protein 7 [Escherichia coli 042]
 gi|290763255|gb|ADD57216.1| Penicillin-binding protein 7 [Escherichia coli O55:H7 str. CB9615]
 gi|291323315|gb|EFE62743.1| D-alanyl-D-alanine endopeptidase [Escherichia coli B088]
 gi|291427811|gb|EFF00838.1| pbpG [Escherichia coli FVEC1412]
 gi|291470964|gb|EFF13448.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298278727|gb|EFI20241.1| pbpG [Escherichia coli FVEC1302]
 gi|300355321|gb|EFJ71191.1| beta-lactamase [Escherichia coli MS 198-1]
 gi|300452239|gb|EFK15859.1| beta-lactamase [Escherichia coli MS 116-1]
 gi|315061445|gb|ADT75772.1| D-alanyl-D-alanine endopeptidase [Escherichia coli W]
 gi|320178919|gb|EFW53882.1| Murein-DD-endopeptidase [Shigella boydii ATCC 9905]
 gi|320192249|gb|EFW66894.1| Murein-DD-endopeptidase [Escherichia coli O157:H7 str. EC1212]
 gi|320199729|gb|EFW74318.1| Murein-DD-endopeptidase [Escherichia coli EC4100B]
 gi|320657567|gb|EFX25365.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|323936749|gb|EGB33034.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1520]
 gi|324015921|gb|EGB85140.1| beta-lactamase [Escherichia coli MS 117-3]
 gi|324118025|gb|EGC11924.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1167]
 gi|326339477|gb|EGD63288.1| Murein-DD-endopeptidase [Escherichia coli O157:H7 str. 1125]
 gi|326343939|gb|EGD67700.1| Murein-DD-endopeptidase [Escherichia coli O157:H7 str. 1044]
 gi|331059430|gb|EGI31407.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli TA143]
          Length = 313

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 45  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 97

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 98  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 156

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 157 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 214

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 215 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 261


>gi|312967428|ref|ZP_07781643.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 2362-75]
 gi|312287625|gb|EFR15530.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 2362-75]
          Length = 310

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 94

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 95  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 153

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 154 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 211

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 212 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 258


>gi|89108951|ref|AP_002731.1| D-alanyl-D-alanine endopeptidase [Escherichia coli str. K-12
           substr. W3110]
 gi|162135905|ref|NP_416638.4| D-alanyl-D-alanine endopeptidase [Escherichia coli str. K-12
           substr. MG1655]
 gi|170081757|ref|YP_001731077.1| D-alanyl-D-alanine endopeptidase [Escherichia coli str. K-12
           substr. DH10B]
 gi|218549549|ref|YP_002383340.1| D-alanyl-D-alanine endopeptidase [Escherichia fergusonii ATCC
           35469]
 gi|218690282|ref|YP_002398494.1| D-alanyl-D-alanine endopeptidase [Escherichia coli ED1a]
 gi|238901318|ref|YP_002927114.1| D-alanyl-D-alanine endopeptidase [Escherichia coli BW2952]
 gi|254162149|ref|YP_003045257.1| D-alanyl-D-alanine endopeptidase [Escherichia coli B str. REL606]
 gi|256017698|ref|ZP_05431563.1| D-alanyl-D-alanine endopeptidase [Shigella sp. D9]
 gi|256022181|ref|ZP_05436046.1| D-alanyl-D-alanine endopeptidase [Escherichia sp. 4_1_40B]
 gi|297518989|ref|ZP_06937375.1| D-alanyl-D-alanine endopeptidase [Escherichia coli OP50]
 gi|306814750|ref|ZP_07448912.1| D-alanyl-D-alanine endopeptidase [Escherichia coli NC101]
 gi|307138792|ref|ZP_07498148.1| D-alanyl-D-alanine endopeptidase [Escherichia coli H736]
 gi|309788012|ref|ZP_07682621.1| D-alanyl-D-alanine endopeptidase [Shigella dysenteriae 1617]
 gi|161788972|sp|P0AFI5|PBP7_ECOLI RecName: Full=D-alanyl-D-alanine endopeptidase;
           Short=DD-endopeptidase; AltName: Full=Penicillin-binding
           protein 7; Short=PBP-7; Flags: Precursor
 gi|161788973|sp|P0AFI6|PBP7_SHIFL RecName: Full=D-alanyl-D-alanine endopeptidase;
           Short=DD-endopeptidase; AltName: Full=Penicillin-binding
           protein 7; Short=PBP-7; Flags: Precursor
 gi|24052567|gb|AAN43742.1| penicillin-binding protein 7 [Shigella flexneri 2a str. 301]
 gi|30041834|gb|AAP17561.1| penicillin-binding protein 7 [Shigella flexneri 2a str. 2457T]
 gi|85675248|dbj|BAE76611.1| D-alanyl-D-alanine endopeptidase [Escherichia coli str. K12 substr.
           W3110]
 gi|87082054|gb|AAC75195.2| D-alanyl-D-alanine endopeptidase [Escherichia coli str. K-12
           substr. MG1655]
 gi|169889592|gb|ACB03299.1| D-alanyl-D-alanine endopeptidase [Escherichia coli str. K-12
           substr. DH10B]
 gi|218357090|emb|CAQ89723.1| D-alanyl-D-alanine endopeptidase [Escherichia fergusonii ATCC
           35469]
 gi|218427846|emb|CAR08759.2| D-alanyl-D-alanine endopeptidase [Escherichia coli ED1a]
 gi|222033896|emb|CAP76637.1| Penicillin-binding protein 7 [Escherichia coli LF82]
 gi|238860732|gb|ACR62730.1| D-alanyl-D-alanine endopeptidase [Escherichia coli BW2952]
 gi|242377776|emb|CAQ32539.1| penicillin-binding protein 7 [Escherichia coli BL21(DE3)]
 gi|253974050|gb|ACT39721.1| D-alanyl-D-alanine endopeptidase [Escherichia coli B str. REL606]
 gi|253978218|gb|ACT43888.1| D-alanyl-D-alanine endopeptidase [Escherichia coli BL21(DE3)]
 gi|281179227|dbj|BAI55557.1| penicillin-binding protein 7 [Escherichia coli SE15]
 gi|305852144|gb|EFM52596.1| D-alanyl-D-alanine endopeptidase [Escherichia coli NC101]
 gi|308924146|gb|EFP69644.1| D-alanyl-D-alanine endopeptidase [Shigella dysenteriae 1617]
 gi|309702448|emb|CBJ01774.1| penicillin-binding protein 7 [Escherichia coli ETEC H10407]
 gi|312946753|gb|ADR27580.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O83:H1 str. NRG
           857C]
 gi|323171786|gb|EFZ57430.1| D-alanyl-D-alanine endopeptidase [Escherichia coli LT-68]
 gi|323187854|gb|EFZ73150.1| D-alanyl-D-alanine endopeptidase [Escherichia coli RN587/1]
 gi|332343912|gb|AEE57246.1| D-alanyl-D-alanine endopeptidase [Escherichia coli UMNK88]
 gi|333001268|gb|EGK20836.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri VA-6]
 gi|333001918|gb|EGK21484.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri K-218]
          Length = 310

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 94

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 95  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 153

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 154 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 211

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 212 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 258


>gi|117618941|ref|YP_856986.1| D-alanyl-D-alanine carboxypeptidase family protein [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117560348|gb|ABK37296.1| D-alanyl-D-alanine carboxypeptidase family protein [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 306

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 128/268 (47%), Gaps = 24/268 (8%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           + +S A+ + A P+   ++ + N N++           AS+TK+MT  ++ +  Q     
Sbjct: 45  LALSSAAFVVANPRTGEVLSERNANRVMPI--------ASITKLMTALVVLDANQRLSEM 96

Query: 100 LN-TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
           L  T   V +   T   S+L +  +     +   +AL++ S N  ++A      G ++ F
Sbjct: 97  LTVTMADVDRLKGTG--SRLAVGSR-LSRADMLHIALMS-SENRAASALARNYPGGQRAF 152

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
              M+ KA+ +GM +T + +++GL  +N +++A D A L +     +P   +Y S  +  
Sbjct: 153 IEAMNAKARMLGMWSTQFSDSTGLTPRN-VSSAHDLAKL-VAAASTYPLIRQYSSTEERM 210

Query: 219 YRN--RII--TNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            RN  R +   N N+L+ +    I   KTGY R +G  +V + +   +P++ V++   T 
Sbjct: 211 VRNGKRQLHYLNSNRLVREGSWPISLSKTGYIREAGRCLVMATQINREPVIMVLLNADTP 270

Query: 274 QERDQKALELITSFLE---KKTLKHQQT 298
             R   A + I S+LE   + +L  Q T
Sbjct: 271 NARVADA-KRIKSWLETSGRMSLTAQST 297


>gi|193070497|ref|ZP_03051437.1| penicillin-binding protein 7 [Escherichia coli E110019]
 gi|192956191|gb|EDV86654.1| penicillin-binding protein 7 [Escherichia coli E110019]
 gi|315615372|gb|EFU96004.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 3431]
 gi|332765942|gb|EGJ96152.1| penicillin-binding protein 7 [Shigella flexneri 2930-71]
 gi|333016619|gb|EGK35948.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri K-304]
          Length = 297

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 29  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 81

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 82  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 140

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 141 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 198

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 199 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 245


>gi|324013985|gb|EGB83204.1| beta-lactamase [Escherichia coli MS 60-1]
          Length = 309

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 45  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 97

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 98  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 156

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 157 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 214

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 215 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 261


>gi|324006491|gb|EGB75710.1| beta-lactamase [Escherichia coli MS 57-2]
          Length = 313

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 45  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 97

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 98  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 156

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 157 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFTNPTYTL 214

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 215 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 261


>gi|256827158|ref|YP_003151117.1| D-alanyl-D-alanine carboxypeptidase [Cryptobacterium curtum DSM
           15641]
 gi|256583301|gb|ACU94435.1| D-alanyl-D-alanine carboxypeptidase [Cryptobacterium curtum DSM
           15641]
          Length = 475

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 127/291 (43%), Gaps = 39/291 (13%)

Query: 15  LTYPYGSIY-IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE 73
           L +P G++  ++++  ++G+ +    + +S    + A+       I V  +  T F++D 
Sbjct: 35  LVFPTGALADVRKSDIVIGQTVSARSLALSRCPNIDAEH-----AIVVGSDGTTYFERDA 89

Query: 74  PR--YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
               + AS+TK+MT     +      + L+T I VS  AA    S   L+E       + 
Sbjct: 90  DTRVHIASITKVMTAVTAID-----SVPLDTTITVSSQAARIGESTAALQEGDTMPLSEA 144

Query: 132 ILALITRSANDVSTAFGEFISG---------------SEKKFAILMSNKAKKIGMQNTIY 176
           + AL+  S ND + A  E I G                 + F   M+ K+  +GM ++I+
Sbjct: 145 LKALLWPSGNDAAWAIAESIGGMMLTSSNKDASDSSACVQAFVDAMNAKSADLGMNDSIW 204

Query: 177 KNASGLHDKNQI----TTARD-QAILGILLRKNFPQYY---KYFSIRKFRYRNRI---IT 225
            N  GL D +      +TARD   ++   + K+  +        + +  R   ++   + 
Sbjct: 205 SNPHGLDDGSWSGDFGSTARDISKLIEYAMSKDAIRSITSTDGGTCKVLRNGEQVSLSLD 264

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           + ++LL       G+KTG+T ++G     ++   D  + +VV+   + ++R
Sbjct: 265 STDELLGSYEGTIGVKTGFTDSAGECFAGAVETSDITLYSVVLDSTSEKQR 315


>gi|164686861|ref|ZP_02210889.1| hypothetical protein CLOBAR_00457 [Clostridium bartlettii DSM
           16795]
 gi|164604251|gb|EDQ97716.1| hypothetical protein CLOBAR_00457 [Clostridium bartlettii DSM
           16795]
          Length = 520

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 128/293 (43%), Gaps = 66/293 (22%)

Query: 35  LFLSIIM-------ISMASELHAKP---KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKM 83
           +FLS++M       ++ A    AKP    +S  V+D N  ++   +Q+  R YPAS  K+
Sbjct: 10  IFLSLMMLISSGIFVNNAHAAQAKPTVYAHSYTVMDANSGEIIISEQENKRIYPASTIKL 69

Query: 84  MTLYI------IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           +T  +      +++ +  KK  LN ++ V  T A   P   Y       T E+ +  L+ 
Sbjct: 70  LTAIVAIENCSLYKRITVKKSTLN-KVDVETTTAGLKPGYAY-------TLEELLNMLLV 121

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---DKNQITTARDQ 194
            SA D +    E + G+ + F  +M+ +AK++GM ++ + N  G+    + N  +T+ D 
Sbjct: 122 YSAGDAAEIIAESVGGTRENFVEMMNIRAKELGMNDSYFDNPVGMDWHKNANIYSTSSDI 181

Query: 195 AILG----------ILLRKNFPQ-----YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDG 239
           A L            +++K  PQ     YYK  S +     N  + N++   N +  I G
Sbjct: 182 AKLTRYAMTNDTIRAIVKK--PQYVIKNYYKGKS-KTLYASNNFLRNYSYSKN-LFTIIG 237

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
            KTG +  +G+ +                   ++  RD    E+I +F  K T
Sbjct: 238 SKTGTSDKAGYAL-------------------SATARDSSGREVICAFFGKST 271


>gi|296168851|ref|ZP_06850523.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295896468|gb|EFG76118.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 413

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 97/224 (43%), Gaps = 24/224 (10%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++   +   K    R+ PAS+ K     ++        L+LN  +P +   A    
Sbjct: 104 LVADLDSGAVIAAKDPHGRHRPASIIK-----VLVAMASINALNLNKAVPGTAEDAAAEG 158

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE---KKFAILMSNKAKKIGMQ 172
           +K+ ++E   FT  Q +  L+  S ND + A    + G +   +K  +L    A K+G +
Sbjct: 159 TKVGVEEGGVFTVNQLLHGLLMHSGNDAAHALAMQLGGMQQAVEKINVL----AAKLGGK 214

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYRNRI------I 224
           +T     SGL      T+A D   +G+  R  +  P +    + R F +          +
Sbjct: 215 DTRAATPSGLDGPGMSTSAYD---IGLFYRYAWQNPTFADIVATRTFDFPGHGDHPGYEL 271

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            N N+LL       G KTGYT ++G   V +  +    ++AV++
Sbjct: 272 ENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANHNGRRLMAVLL 315


>gi|302543172|ref|ZP_07295514.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302460790|gb|EFL23883.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           himastatinicus ATCC 53653]
          Length = 929

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 100/204 (49%), Gaps = 19/204 (9%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTEQGIL 133
           AS+TK+MT Y++ +    K      +I +  TAA +    + S+  +KE   FT  Q + 
Sbjct: 605 ASVTKVMTAYVVLKDHPLKAGAEGPRIEIDATAAEESGSADESRASVKEGQSFTQHQLLQ 664

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  S+N+++     + +GS   F   M++ AK +GM+NT Y + SGL +  + +TA D
Sbjct: 665 LLLINSSNNIARLLARWDAGSLDAFTKKMNDAAKSLGMKNTTYTDPSGLKETTK-STASD 723

Query: 194 QAILGILLRKNFPQYYKYFSI-----RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
           Q    + L K   Q   +  +      +    +  I N+N LL K   I GIKTG +  +
Sbjct: 724 Q----LKLAKAAMQSEAFREVVATPNTQIPGLDGKIYNNNNLLVKPGVI-GIKTGSSTPA 778

Query: 249 G----FNIVTSLRYKDDPIVAVVM 268
           G    +  V ++  K   I+ VV+
Sbjct: 779 GGALMWGAVRTIDGKKQRILGVVL 802


>gi|218559053|ref|YP_002391966.1| D-alanyl-D-alanine endopeptidase [Escherichia coli S88]
 gi|218365822|emb|CAR03562.1| D-alanyl-D-alanine endopeptidase [Escherichia coli S88]
 gi|307626324|gb|ADN70628.1| D-alanyl-D-alanine endopeptidase [Escherichia coli UM146]
          Length = 310

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 94

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 95  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 153

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 154 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 211

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 212 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 258


>gi|313651237|gb|EFS15635.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri 2a str. 2457T]
 gi|332755752|gb|EGJ86113.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri K-671]
 gi|332756170|gb|EGJ86521.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri 2747-71]
          Length = 300

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 32  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 84

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 85  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 143

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 144 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 201

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 202 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 248


>gi|227891443|ref|ZP_04009248.1| D-alanyl-D-alanine serine family carboxypeptidase [Lactobacillus
           salivarius ATCC 11741]
 gi|227866590|gb|EEJ74011.1| D-alanyl-D-alanine serine family carboxypeptidase [Lactobacillus
           salivarius ATCC 11741]
          Length = 384

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 114/256 (44%), Gaps = 37/256 (14%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A ++ AK  Y   +ID    Q+   +  + +YP ASLTK++TL +I + + ++KL  + +
Sbjct: 30  ADKIDAKAAY---MIDAGTGQVLYQQNADSKYPIASLTKILTLAVIMKDIHNQKLSWDQK 86

Query: 104 IPVSKT----AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           I V+K     A     S + L E   +T +  + +++  SA+  + A     +GS + F 
Sbjct: 87  IKVNKDVSDMANNWQYSNVQLNEGESYTVKSLVESMMIVSADGSTEALALADAGSVQAFN 146

Query: 160 ILMSNKAKKIGMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNF 205
             M   A + G+ +    N  GL               D+    +A+D A++   L  N+
Sbjct: 147 EKMKEVAHEAGVTDAEIYNMIGLPNSDLGNLKLKNVGDDQENKFSAKDIALVSKYLVNNY 206

Query: 206 PQYYKY-------FSIRKFRYRNRIITNHNKLLN------KMHNIDGIKTGYTRNSGFNI 252
           P+           F I   +  N  + N N +L       K   IDG+KTG+T  +G+  
Sbjct: 207 PEVIDITKQKNVDFKISADQTYN--MENINYMLEGSYAAPKNGTIDGLKTGFTDEAGYCF 264

Query: 253 VTSLRYKDDPIVAVVM 268
           V +  +    ++ V++
Sbjct: 265 VGTGTFNGQRVITVIL 280


>gi|301024377|ref|ZP_07188066.1| beta-lactamase [Escherichia coli MS 196-1]
 gi|299880474|gb|EFI88685.1| beta-lactamase [Escherichia coli MS 196-1]
          Length = 291

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 29  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 81

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 82  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 140

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 141 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 198

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 199 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 245


>gi|91211421|ref|YP_541407.1| D-alanyl-D-alanine endopeptidase [Escherichia coli UTI89]
 gi|110642343|ref|YP_670073.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 536]
 gi|117624337|ref|YP_853250.1| D-alanyl-D-alanine endopeptidase [Escherichia coli APEC O1]
 gi|237704597|ref|ZP_04535078.1| penicillin-binding protein 7 [Escherichia sp. 3_2_53FAA]
 gi|300981491|ref|ZP_07175572.1| beta-lactamase [Escherichia coli MS 200-1]
 gi|331658214|ref|ZP_08359176.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli TA206]
 gi|91072995|gb|ABE07876.1| penicillin-binding protein 7 precursor
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli UTI89]
 gi|110343935|gb|ABG70172.1| D-alanyl-D-alanine- endopeptidase [Escherichia coli 536]
 gi|115513461|gb|ABJ01536.1| D-alanyl-D-alanine endopeptidase [Escherichia coli APEC O1]
 gi|226900963|gb|EEH87222.1| penicillin-binding protein 7 [Escherichia sp. 3_2_53FAA]
 gi|294492842|gb|ADE91598.1| penicillin-binding protein 7 [Escherichia coli IHE3034]
 gi|300307564|gb|EFJ62084.1| beta-lactamase [Escherichia coli MS 200-1]
 gi|315285794|gb|EFU45234.1| beta-lactamase [Escherichia coli MS 110-3]
 gi|315299372|gb|EFU58624.1| beta-lactamase [Escherichia coli MS 16-3]
 gi|323951931|gb|EGB47805.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H252]
 gi|323955899|gb|EGB51652.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H263]
 gi|331056462|gb|EGI28471.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli TA206]
          Length = 313

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 45  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 97

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 98  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 156

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 157 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 214

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 215 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 261


>gi|153811304|ref|ZP_01963972.1| hypothetical protein RUMOBE_01696 [Ruminococcus obeum ATCC 29174]
 gi|149832431|gb|EDM87515.1| hypothetical protein RUMOBE_01696 [Ruminococcus obeum ATCC 29174]
          Length = 334

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 103/235 (43%), Gaps = 34/235 (14%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT--QNPSKLYLKEKTYFTTEQGIL 133
           YPAS+TK++T  + F     K  +++  + +++   T  +    +  +     T +Q + 
Sbjct: 108 YPASITKIITALLAF-----KNSNMDDVVTITQENITLEEGSQVVGFQVGDQVTMDQLVH 162

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  S ND ++A    + GS + F  +M+  A ++G   T + N  GL D+N  TT  D
Sbjct: 163 CLLVYSGNDAASAIATHVGGSTENFVAMMNEYAAQLGCTGTHFTNPHGLQDENHYTTPYD 222

Query: 194 QAILGILLRK-----------NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN------ 236
              + ++L++             P Y   F        +  +T  +  L    N      
Sbjct: 223 ---IYLMLKEALKYPEFTEITQLPSYTVTFQHSDGSEDSVSLTATDHYLTGEANAPKGVT 279

Query: 237 IDGIKTGYTRNSGFNIVTSLRYK--DDPIVAVVMGMPTSQERDQKALELITSFLE 289
           + G KTG T ++G N +  L      +P V++VMG  T +   Q+    +TS LE
Sbjct: 280 VLGGKTGTTSSAG-NCLALLCQNSYGEPYVSIVMGASTKELLYQQ----MTSLLE 329


>gi|221632462|ref|YP_002521683.1| beta-lactamase [Thermomicrobium roseum DSM 5159]
 gi|221156002|gb|ACM05129.1| beta-lactamase [Thermomicrobium roseum DSM 5159]
          Length = 364

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 126/296 (42%), Gaps = 43/296 (14%)

Query: 31  MGKILFLSII-----MISMASELHAKPKYSS---------------IVIDVNKN-QMTGF 69
           M  +L L+++      +++  E+ ++P  SS                 +D+    ++   
Sbjct: 1   MASVLMLALLGTTTRAVAVVPEVSSRPAPSSAYQPAERPTLTARASFAVDITAGVELWAQ 60

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE 129
           + D P  PAS TK+MT  ++  +L+  +        +   A   N      +     T  
Sbjct: 61  EADRPLPPASTTKLMTALVVRRWLRPDESITIRSDDLVDPAVYANAG---FQPGDRVTVT 117

Query: 130 QGILALITRSANDVSTAF----GEFISGSEK----KFAILMSNKAKKIGMQNTIYKNASG 181
             + A++  SA D + A     GE I          F   M+ +A ++G++++ +    G
Sbjct: 118 DLLAAMLIASAGDAALALARVAGERIDPEHDVPRTAFIDAMNQEAARLGLRHSWFATPDG 177

Query: 182 LHDKNQITTARDQAILGI------LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
                Q  +ARD AI+        LL +      +   I   + R   + N N+ L +  
Sbjct: 178 RDVPGQTVSARDLAIIAAAVLSDPLLAELVATRTREIEIAGPQSRRITVVNTNQFLTEPD 237

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
            + G+KTG +  +G  +V ++R  +D +V V++   +S++R   A  L+T +L+++
Sbjct: 238 AL-GVKTGTSVAAGQCLVAAVRRGNDIVVLVLL---SSRDRYADARALLT-YLDRQ 288


>gi|332097490|gb|EGJ02470.1| D-alanyl-D-alanine endopeptidase [Shigella boydii 3594-74]
          Length = 292

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 24  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 76

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 77  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 135

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 136 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 193

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 194 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 240


>gi|264677800|ref|YP_003277706.1| peptidase S11, D-alanyl-D-alanine [Comamonas testosteroni CNB-2]
 gi|262208312|gb|ACY32410.1| peptidase S11, D-alanyl-D-alanine [Comamonas testosteroni CNB-2]
          Length = 404

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 105/209 (50%), Gaps = 25/209 (11%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQNP 115
           VID + +++   K D+   P ASLTK+MT  +I +     +L ++  I +++    T+  
Sbjct: 157 VIDQDTHEVLLSKNDQAVLPIASLTKLMTGLLISQA----RLPMDEMITITQDDVDTEKH 212

Query: 116 SKLYLKEKTYFTTEQGI-LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           S   L+  T  T  + + LAL++ S N  + A G    G   +F  LM++KA ++GM++T
Sbjct: 213 SSSRLRVGTTLTRAEMMHLALMS-SENRAAHALGRTYPGGLAQFVQLMNSKALQLGMKDT 271

Query: 175 IYKNASGLHDKNQITTARDQAIL------GILLRK--NFPQYYKYFSIRKFRYRNRIITN 226
            Y   +GL   NQ ++ARD A L        L+R+    P Y      R  ++      N
Sbjct: 272 RYVEPTGLSSSNQ-SSARDLARLVAVAHADPLMREYSTSPGYEVAVGRRTLQF-----NN 325

Query: 227 HNKLLNKMHNID-GI-KTGYTRNSGFNIV 253
            N+L+ K  N D G+ KTGY   +G  +V
Sbjct: 326 TNRLV-KSDNWDIGLQKTGYISEAGRCLV 353


>gi|299531620|ref|ZP_07045025.1| D-alanyl-D-alanine endopeptidase [Comamonas testosteroni S44]
 gi|298720336|gb|EFI61288.1| D-alanyl-D-alanine endopeptidase [Comamonas testosteroni S44]
          Length = 404

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 105/209 (50%), Gaps = 25/209 (11%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQNP 115
           VID + +++   K D+   P ASLTK+MT  +I +     +L ++  I +++    T+  
Sbjct: 157 VIDQDTHEVLLSKNDQAVLPIASLTKLMTGLLISQA----RLPMDEMITITQDDVDTEKH 212

Query: 116 SKLYLKEKTYFTTEQGI-LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           S   L+  T  T  + + LAL++ S N  + A G    G   +F  LM++KA ++GM++T
Sbjct: 213 SSSRLRVGTTLTRAEMMHLALMS-SENRAAHALGRTYPGGLAQFVQLMNSKALQLGMKDT 271

Query: 175 IYKNASGLHDKNQITTARDQAIL------GILLRK--NFPQYYKYFSIRKFRYRNRIITN 226
            Y   +GL   NQ ++ARD A L        L+R+    P Y      R  ++      N
Sbjct: 272 RYVEPTGLSSSNQ-SSARDLARLVAVAHADPLMREYSTSPGYEVAVGRRTLQF-----NN 325

Query: 227 HNKLLNKMHNID-GI-KTGYTRNSGFNIV 253
            N+L+ K  N D G+ KTGY   +G  +V
Sbjct: 326 TNRLV-KSDNWDIGLQKTGYISEAGRCLV 353


>gi|191170132|ref|ZP_03031686.1| penicillin-binding protein 7 [Escherichia coli F11]
 gi|190909648|gb|EDV69233.1| penicillin-binding protein 7 [Escherichia coli F11]
          Length = 297

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 29  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 81

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 82  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 140

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 141 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 198

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 199 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 245


>gi|239981571|ref|ZP_04704095.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces albus J1074]
 gi|291453424|ref|ZP_06592814.1| predicted protein [Streptomyces albus J1074]
 gi|291356373|gb|EFE83275.1| predicted protein [Streptomyces albus J1074]
          Length = 907

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 19/188 (10%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA------ATQNPSKLYLKEKTYFTTEQG 131
            S+ K+MT Y I      KK     ++ +   A      A Q  S + + E    + ++ 
Sbjct: 584 GSVAKVMTAYTILREHPVKKGTEGERLTIDAKAQQDYENAGQE-STVKVTEGQKISVKEA 642

Query: 132 ILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
           I A++  SAN+++     + S G E  F   M+  A ++GM+NT Y + SGL  +  +++
Sbjct: 643 IEAIMLPSANNIARQLARWDSDGDEAAFVEKMNKYAAELGMENTTYTDPSGLK-ETTVSS 701

Query: 191 ARDQAILGILLRKNFPQYYKYFS--IRKFRYRNRIITNHNK---LLNKMHNIDGIKTGYT 245
           A DQ  LG  + +     ++ FS  +R   Y +       K    L  M+ + GIKTG T
Sbjct: 702 AEDQVKLGKAVME-----FETFSSVVRLPNYESTTSGQREKNYNFLVPMYGVVGIKTGST 756

Query: 246 RNSGFNIV 253
             +G N++
Sbjct: 757 TKAGGNLL 764


>gi|110806113|ref|YP_689633.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri 5 str. 8401]
 gi|110615661|gb|ABF04328.1| penicillin-binding protein 7 [Shigella flexneri 5 str. 8401]
          Length = 310

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 94

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 95  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 153

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 154 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 211

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 212 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 258


>gi|221067891|ref|ZP_03543996.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Comamonas
           testosteroni KF-1]
 gi|220712914|gb|EED68282.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Comamonas
           testosteroni KF-1]
          Length = 402

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 105/209 (50%), Gaps = 25/209 (11%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQNP 115
           VID + +++   K D+   P ASLTK+MT  +I +     +L ++  I +++    T+  
Sbjct: 155 VIDQDTHEVLLSKNDQAVLPIASLTKLMTGLLISQA----RLPMDEMITITQDDVDTEKH 210

Query: 116 SKLYLKEKTYFTTEQGI-LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           S   L+  T  T  + + LAL++ S N  + A G    G   +F  LM++KA ++GM++T
Sbjct: 211 SSSRLRVGTTLTRAEMMHLALMS-SENRAAHALGRTYPGGLSQFVQLMNSKALQLGMKDT 269

Query: 175 IYKNASGLHDKNQITTARDQAIL------GILLRK--NFPQYYKYFSIRKFRYRNRIITN 226
            Y   +GL   NQ ++ARD A L        L+R+    P Y      R  ++      N
Sbjct: 270 RYVEPTGLSSSNQ-SSARDLARLVAVAHADPLMREYSTSPGYEVAVGRRTLQF-----NN 323

Query: 227 HNKLLNKMHNID-GI-KTGYTRNSGFNIV 253
            N+L+ K  N D G+ KTGY   +G  +V
Sbjct: 324 TNRLV-KSDNWDIGLQKTGYISEAGRCLV 351


>gi|322833771|ref|YP_004213798.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Rahnella sp.
           Y9602]
 gi|321168972|gb|ADW74671.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Rahnella sp.
           Y9602]
          Length = 310

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 101/227 (44%), Gaps = 23/227 (10%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  +++      DE R  ASLTK+MT  +  +   +  L     I +S T   +
Sbjct: 42  SAMVVDLKSHEVIYSRNPDEVRPIASLTKLMTAMVTLD--ANLPLDEVINIDISNTPEMR 99

Query: 114 NP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S++ L  +   T  Q I   +  S N  + +      G    F   M+ KAK +GM 
Sbjct: 100 GVFSRVKLNSE--ITRRQMIQLALMSSENRAAASLAAHYPGGYSAFINAMNAKAKSLGMT 157

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFP---------QYYKYFSIRKFR--YRN 221
           +T Y   +GL  +N ++TARD   L +L  + +P         +    FS   +   +RN
Sbjct: 158 HTHYAEPTGLSPRN-VSTARDLTRL-LLASQRYPLIGQLSTTAEKTAVFSHPAYALPFRN 215

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              TNH  ++N   NI   KTGYT  +G  +         P+  VVM
Sbjct: 216 ---TNH-LIMNPSWNIQLTKTGYTDEAGHCLAMRTTINGKPVTLVVM 258


>gi|166240883|ref|ZP_02240755.1| D-alanyl-D-alanine carboxypeptidase [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 146

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 1/127 (0%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTL 86
           +QL G  LF+S    + A+ +      S+I+++ N  Q+      D    PAS++KMMT 
Sbjct: 20  LQLFGMHLFVSSAAAADANAIPDLQAKSAILMEANTGQVLYENNADTLLPPASMSKMMTE 79

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y+I E ++  K+    ++PVSK AA+   S   L E    + +    A+   S+ND S A
Sbjct: 80  YLIMEAIKDGKIKWEDKVPVSKQAASAIGSGQLLAEGEQLSVKDMFYAISIYSSNDASVA 139

Query: 147 FGEFISG 153
             E++ G
Sbjct: 140 MAEYLGG 146


>gi|219853360|ref|YP_002470482.1| hypothetical protein CKR_0017 [Clostridium kluyveri NBRC 12016]
 gi|219567084|dbj|BAH05068.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 316

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 60/126 (47%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +E  YPASLTK+MT  +  E L + K  +       +     + S    +     +    
Sbjct: 84  EEKIYPASLTKIMTAIVAIENLPNLKEEIRLTNSTFQRLYEADASMTGFQPGEKVSAIDL 143

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +   +  S  +        I+GSE+ F  +M+ KA  +GM NT ++N +G+H++N  TT 
Sbjct: 144 LYGALLPSGAESCIGLANQIAGSEQGFVKMMNQKAADLGMDNTHFENVTGIHNENHYTTV 203

Query: 192 RDQAIL 197
            + A+L
Sbjct: 204 ENLAVL 209


>gi|295098157|emb|CBK87247.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 307

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS+TK+MT  ++ +     +L L+ ++   K   + 
Sbjct: 43  SAMIVDLNTNKVIYASHPDLVRPIASITKVMTAMVVLD----ARLPLDEKL---KVDISH 95

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G    F   M+ KAK 
Sbjct: 96  TPEMKGIYSRVRLNSEISRKNMLLLALMS-SENRAAASLAHHYPGGYDAFIRAMNAKAKA 154

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM+NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 155 LGMKNTHFVEPTGLSIHN-VSTARDLTKL-LIASKQYPLIGQLSTTREEMATFSNPAYTL 212

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V    +   P+  VVM
Sbjct: 213 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVFNGKPVALVVM 259


>gi|300902216|ref|ZP_07120216.1| Penicillin-binding protein 7 [Escherichia coli MS 84-1]
 gi|301305178|ref|ZP_07211277.1| Penicillin-binding protein 7 [Escherichia coli MS 124-1]
 gi|300405735|gb|EFJ89273.1| Penicillin-binding protein 7 [Escherichia coli MS 84-1]
 gi|300839582|gb|EFK67342.1| Penicillin-binding protein 7 [Escherichia coli MS 124-1]
 gi|315255353|gb|EFU35321.1| Penicillin-binding protein 7 [Escherichia coli MS 85-1]
          Length = 313

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N+ +     D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 45  SAMIVDLNTNKAIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 97

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 98  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 156

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 157 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 214

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 215 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 261


>gi|262038951|ref|ZP_06012291.1| serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia goodfellowii
           F0264]
 gi|261747032|gb|EEY34531.1| serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia goodfellowii
           F0264]
          Length = 541

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 107/224 (47%), Gaps = 22/224 (9%)

Query: 75  RYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           ++P ASLTK+M + +  + +    + L+ ++  +   A    S L +K    +     + 
Sbjct: 216 QHPIASLTKVMNILVALDEVDKGNVSLDDKVCFTPQNANVGGSWLNVKVGDCYLLRDLLR 275

Query: 134 ALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGL-----HDKNQ 187
           + I  SAN+ +      +  G+ + F  LM+ KAK++GM NT +   +GL          
Sbjct: 276 SEIIYSANNSAYLVAYHVGKGNIEYFVKLMNQKAKELGMNNTEFHTPAGLPTTMTGKGMD 335

Query: 188 ITTARDQAILG--ILLRKNFPQYYKYFSI-------RKFRYRNRIITNHNKLLNKMHNID 238
           ++TA D  ++G   +  K   ++     +        +  Y++R     N LL + + I 
Sbjct: 336 VSTAYDMFLMGKKAIEDKRIREWASEPELVLVNPAGEQVIYKSR-----NHLLGQ-YGIY 389

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           G+KTG+   +G+NI+ + +  +  I++VV+G  T  +R +  LE
Sbjct: 390 GLKTGFHVQAGYNIIVTGKMGNIEIISVVLGHKTHNQRTKDQLE 433


>gi|301299364|ref|ZP_07205646.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853035|gb|EFK80637.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 384

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 113/256 (44%), Gaps = 37/256 (14%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A ++ AK  Y   +ID    Q+   +    +YP ASLTK++T+ +I + + ++KL  + +
Sbjct: 30  ADKIDAKAAY---MIDAGTGQVLYQQNANSKYPIASLTKILTIAVIMKDIHNQKLSWDQK 86

Query: 104 IPVSKT----AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           I V+K     A     S + L E   +T +  + +++  SA+  + A     +GS K F 
Sbjct: 87  IKVNKDVSDMANNWQYSNVQLNEGESYTVKSLVESMMIVSADGSTEALALADAGSVKAFN 146

Query: 160 ILMSNKAKKIGMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNF 205
             M   A + G+ +    N  GL               D+    +A+D A++   L  N+
Sbjct: 147 EKMKEVAHEAGVTDAEIYNMIGLPNSDLGNLKLKNVGDDQENKFSAKDIALISKYLVNNY 206

Query: 206 PQYYKY-------FSIRKFRYRNRIITNHNKLLN------KMHNIDGIKTGYTRNSGFNI 252
           P+           F I   +  N  + N N +L       K   IDG+KTG+T  +G+  
Sbjct: 207 PEVIDITKQKNVDFKISDDQTYN--MENINYMLEGSYAAPKNGTIDGLKTGFTDEAGYCF 264

Query: 253 VTSLRYKDDPIVAVVM 268
           V +  +    ++ V++
Sbjct: 265 VGTGTFNGQRVITVIL 280


>gi|319637748|ref|ZP_07992514.1| D-alanyl-D-alanine-endopeptidase [Neisseria mucosa C102]
 gi|317400903|gb|EFV81558.1| D-alanyl-D-alanine-endopeptidase [Neisseria mucosa C102]
          Length = 318

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 20/225 (8%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           AS++K+M+  ++ +       HL+   P++ T A  +    +   L   T  T  + +  
Sbjct: 104 ASISKLMSAMVVLDA------HLDMNEPITITEAEIDRLKGTGSRLSIGTTLTRGELLHL 157

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD- 193
            +  S N  + A G    G    F   M+ KA+ +GM ++ +   +GL+ +N ++TARD 
Sbjct: 158 SLMSSENRATHALGRTYPGGMSAFVAAMNAKAQSLGMSSSRFYEPTGLNFQN-VSTARDL 216

Query: 194 -----QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK-MHNIDGIKTGYTRN 247
                 A    L+RKN    Y        R   +   N N L+ +   NI+  KTGY R 
Sbjct: 217 NRMVAAASKYPLIRKNSTSNYGSVWTANGRQNYK---NSNALVREGSWNIELQKTGYIRE 273

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +G ++V     ++ PI  V++  P+S  R   A ++ +  L++++
Sbjct: 274 AGRSMVVKANVQNQPITIVLLNSPSSTTRVNDARKIESWMLQRRS 318


>gi|269925806|ref|YP_003322429.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269789466|gb|ACZ41607.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 334

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 120/287 (41%), Gaps = 53/287 (18%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTG----------------FKQDEPRYP 77
           +L ++ I++ +++   A P  +++V+   + ++T                 +K ++    
Sbjct: 22  LLLIAGIIVPISTANAALPASNAVVLPYPEPEITAKSALVMDRRTGKILWAYKPNKKLAM 81

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS  KMMT  +  +Y        N  I V         S  YL+     T    + A + 
Sbjct: 82  ASTAKMMTAILALQYADP-----NEVIKVYPRDLVGG-STAYLRAGEKLTLTDLLKAALI 135

Query: 138 RSANDVSTAFGEFIS---------GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            S ND +    +++             + F   M+ KA ++G+ +T+++  +G     Q 
Sbjct: 136 PSGNDAAVTIADYVGRKYLGGVGDNGIQVFVDEMNAKAHELGLDHTVFRTPNGFDAPGQY 195

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII------------TNHNKLLNKMHN 236
           +TA D A LG  L  N        S     YR R+I             + N LL     
Sbjct: 196 STALDLAKLGRELLDN-----PLLSSIVGTYRTRVIGHLGGKPVYHTLVSTNDLLPIYPG 250

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER--DQKAL 281
           + GIKTG T  +G N+V+ ++  +  ++AVV+G   SQ+R  D +A+
Sbjct: 251 MQGIKTGTTPAAGENLVSYVKRGNIELIAVVLG---SQDRFADTRAI 294


>gi|270262024|ref|ZP_06190296.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Serratia
           odorifera 4Rx13]
 gi|270043900|gb|EFA16992.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Serratia
           odorifera 4Rx13]
          Length = 277

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 122/269 (45%), Gaps = 51/269 (18%)

Query: 34  ILFLSIIMISMASELHAKPK--YSSIVIDVNKNQMTG----FKQDEPRYP-ASLTKMMTL 86
           ++ LS++ + +A    A P   +S  V+ VN  Q TG     KQ +   P ASLTK+MT 
Sbjct: 18  VIALSLLFV-IAPAQAAAPLVLHSKAVLVVN--QRTGKTLFQKQADRVLPIASLTKLMTA 74

Query: 87  YIIFEYLQSKKLHLNTQIPVS-KTAATQNPSKLYLKEKTYFTTEQGI-------LALITR 138
            +           L+++ P+  K   T     L  K  +  T    +       +AL++ 
Sbjct: 75  MVA----------LDSRRPLGNKMRVTAADRDLLKKTHSRLTLGSSLSRRDMLHIALMS- 123

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S N  + A      G  K F   M+ KA+ IGM++  + +++GL  +N + +A D     
Sbjct: 124 SENRAAAALSRNYPGGRKAFVAKMNRKARSIGMKHARFYDSTGLTPRN-VASAND----- 177

Query: 199 ILLRKNFPQYYKYFSIRKFR-------YRNR---IITNHNKLL-NKMHNIDGIKTGYTRN 247
             L K     Y+Y +IR+F        Y  R   +  + N L+ N+  NI   KTGYT  
Sbjct: 178 --LLKMVNHAYRYQTIRRFSTDRQHVVYPGRGQLVYRSSNGLINNRNWNIQLQKTGYTNE 235

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           +G  +V     K  P+V +++G   SQ+R
Sbjct: 236 AGHCLVMRTLIKGQPVVIILLG---SQQR 261


>gi|313906127|ref|ZP_07839476.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Eubacterium
           cellulosolvens 6]
 gi|313469014|gb|EFR64367.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Eubacterium
           cellulosolvens 6]
          Length = 544

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 89/222 (40%), Gaps = 32/222 (14%)

Query: 57  IVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           I++D+N NQ          YPAS+TK+MT  +  E++ + +  +         A T+  +
Sbjct: 301 IILDMNSNQRI--------YPASMTKIMTTLVAIEHITNLEDTVTFTGGEYDRAYTEGAT 352

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
                     +    +  ++  S  D   A  + + GSE  F  +M+ KA+++GM +T +
Sbjct: 353 TANFMAGDVVSYNDVLYGIMLPSGADACYAIADALGGSEAGFVNMMNEKAQQLGMNDTHF 412

Query: 177 KNASGLHDKNQITTARDQAIL--GILLRKNFPQYYK----------------YFSIRKFR 218
            N +GL +++  TT  D   L    L  + F   +                   S   F 
Sbjct: 413 TNCTGLTNEDHYTTCADMIKLLQAALQNETFKTVFCTHVHTTGPLGLNPDGLQLSSTAFT 472

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           Y        + LL     I G KTG+T  +G  + +  +  D
Sbjct: 473 YLG------SPLLQNGTEITGTKTGFTDEAGHCLASCAKAGD 508


>gi|153952688|ref|YP_001393453.1| D-alanyl-D-alanine carboxypeptidase precursor [Clostridium kluyveri
           DSM 555]
 gi|146345569|gb|EDK32105.1| Predicted D-alanyl-D-alanine carboxypeptidase precursor
           [Clostridium kluyveri DSM 555]
          Length = 310

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 60/126 (47%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +E  YPASLTK+MT  +  E L + K  +       +     + S    +     +    
Sbjct: 78  EEKIYPASLTKIMTAIVAIENLPNLKEEIRLTNSTFQRLYEADASMTGFQPGEKVSAIDL 137

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +   +  S  +        I+GSE+ F  +M+ KA  +GM NT ++N +G+H++N  TT 
Sbjct: 138 LYGALLPSGAESCIGLANQIAGSEQGFVKMMNQKAADLGMDNTHFENVTGIHNENHYTTV 197

Query: 192 RDQAIL 197
            + A+L
Sbjct: 198 ENLAVL 203


>gi|121604627|ref|YP_981956.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Polaromonas
           naphthalenivorans CJ2]
 gi|120593596|gb|ABM37035.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Polaromonas naphthalenivorans CJ2]
          Length = 363

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 95/209 (45%), Gaps = 21/209 (10%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQ 113
           ++VID +  ++   K D    P ASLTK+MT  II       +L ++  I V++    T+
Sbjct: 109 ALVIDQDTREVLFSKNDHAVLPIASLTKLMTGVII----SGARLPMDEMITVTQDDVDTE 164

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+  L      +  + +   +  S N  + A G    G    F  LM+ KAK +GM +
Sbjct: 165 KHSRSRLSVGATLSRGEMLHLALMSSENRAAHALGRTYPGGMATFVSLMNAKAKMLGMHD 224

Query: 174 TIYKNASGLHDKNQITTARDQAIL------GILLRK--NFPQYYKYFSIRKFRYRNRIIT 225
           T Y   +GL  +NQ ++A+D A L        +LR+    P Y      R  ++      
Sbjct: 225 TSYAEPTGLSSRNQ-SSAQDLAALVNAAHGDPVLRELTTSPGYQVAVGSRTLQF-----N 278

Query: 226 NHNKLL-NKMHNIDGIKTGYTRNSGFNIV 253
           N N+L+ N   +I   KTGY   +G  +V
Sbjct: 279 NTNRLVKNPDWDIGLQKTGYINEAGQCLV 307


>gi|261340569|ref|ZP_05968427.1| beta-lactamase [Enterobacter cancerogenus ATCC 35316]
 gi|288316977|gb|EFC55915.1| beta-lactamase [Enterobacter cancerogenus ATCC 35316]
          Length = 306

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 103/233 (44%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS+TK+MT  ++ +     +L L+ ++   K   + 
Sbjct: 42  SAMIVDLNTNKVIYASHPDLVRPIASITKLMTAMVVLD----ARLPLDEKL---KVDISH 94

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G    F   M+ KAK 
Sbjct: 95  TPEMKGIYSRVRLNSEISRKNMLLLALMS-SENRAAASLAHHYPGGYDAFIRAMNAKAKS 153

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 154 LGMTNTRFVEPTGLSIHN-VSTARDLTKL-LVASKRYPLLGQLSTTREDMATFSNPPYTL 211

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V    +   P+  VVM
Sbjct: 212 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVFNGKPVALVVM 258


>gi|319942241|ref|ZP_08016556.1| hypothetical protein HMPREF9464_01775 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804114|gb|EFW01014.1| hypothetical protein HMPREF9464_01775 [Sutterella wadsworthensis
           3_1_45B]
          Length = 372

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 95/210 (45%), Gaps = 23/210 (10%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MT  +I E      + L+ ++ +++    ++ +   L      T E  + A + 
Sbjct: 145 ASVTKLMTALVIAE----SDVDLDEKVRITREDYVRSTAHSKLISGMRLTRESLLKAALM 200

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S N  + A      G  K F   M+ +A  IGM N+ + + +GL ++N  +TARD   L
Sbjct: 201 SSDNRAAAALARTYPGGRKAFVAKMNERAAAIGMTNSFFADPTGLDNRNH-STARD---L 256

Query: 198 GILLRKNFPQYYKYFSIRKFRYRN--RIITNH--------NKLLNKMHNIDGI-KTGYTR 246
           G L+       Y++  IR     +  RI T          N+L+       GI KTG+T 
Sbjct: 257 GKLV----AAVYQHQEIRDASTTSMARISTGRRQVNLATTNRLIGDPSWRIGIQKTGFTT 312

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
            +G  +V      +  +V VV+  P + +R
Sbjct: 313 AAGRCMVVQSDVGERRLVMVVLDSPNNAQR 342


>gi|146312376|ref|YP_001177450.1| D-alanyl-D-alanine endopeptidase [Enterobacter sp. 638]
 gi|145319252|gb|ABP61399.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Enterobacter sp. 638]
          Length = 315

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 104/233 (44%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS+TK+MT  ++ +     +L L+ ++   K   + 
Sbjct: 42  SAMIVDLNTNKVIYSSHPDLVRPIASITKLMTAMVVLD----ARLPLDEKL---KVDISH 94

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G    F   M+ KAK 
Sbjct: 95  TPEMKGIYSRVRLNSEISRKNMLLLALMS-SENRAAASLAHHYPGGYDAFIRAMNAKAKS 153

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM+NT +   +GL   N ++TARD   + ++  K +P   +  + R+            
Sbjct: 154 LGMKNTRFVEPTGLSIHN-VSTARDLTQM-LIASKQYPLIGQLSTTREEMATFANPAYTL 211

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V    +   P+  VVM
Sbjct: 212 PFRNTNHLVYREN------WNIQLTKTGFTNAAGHCLVMRTVFNGKPVALVVM 258


>gi|331002378|ref|ZP_08325896.1| hypothetical protein HMPREF0491_00758 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410194|gb|EGG89628.1| hypothetical protein HMPREF0491_00758 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 483

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 102/224 (45%), Gaps = 21/224 (9%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTE 129
           E  YPAS+TK++T  I+ E       +L+  +  SK A        S   L      T  
Sbjct: 62  EHYYPASITKILTALIVVE-----NCNLDDIVTFSKNAVYNVEAGSSSAGLDVGDTLTVR 116

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
             + A++ +SAN+ + A  E  +GS ++FA +M+ KA  +G  ++ + N SGL+  +  T
Sbjct: 117 DCLYAMLLQSANEAANALAEHTAGSIEEFANMMNQKASNLGCTDSHFVNPSGLNSPDHYT 176

Query: 190 TARDQAILG-------ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-----NKMHNI 237
           +A D A++        I+   +   YY     ++     + I NH+ +L     N   N 
Sbjct: 177 SAYDYALISRAAFMNPIVTEIDSATYYNLPPSKRVP-TGQTIYNHHSMLRKTSGNYYQNA 235

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
              KTGYT  +G  +VT  R     ++ VV+    +   D + L
Sbjct: 236 ICGKTGYTTLAGNTLVTYARNDQIGLITVVLNGNKTHYTDTQEL 279


>gi|295094878|emb|CBK83969.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus sp. ART55/1]
          Length = 172

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S I+++ +  Q+   K  DE   PAS+TK+MTL + FE +++ ++ L+  + VS+ AA+ 
Sbjct: 63  SCILVEASTGQVLFEKNCDEAMAPASVTKVMTLLLAFEAIEAGQMTLDDIVTVSEHAASM 122

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
             S+ + +     T E  I  +I  S ND + A  E
Sbjct: 123 GGSQCFFEAGEEQTVEDMIKCIIIASGNDAAVAMAE 158


>gi|239932885|ref|ZP_04689838.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
           14672]
          Length = 406

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 12/129 (9%)

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           + G  +  A  M  KA  +G ++T  ++  G     Q+++A D A+ G    +N P++ +
Sbjct: 172 LGGGWRTTAERMEAKAHALGARDTRVESPDGYDAPGQVSSAFDLAVFGRAGLRN-PEFAR 230

Query: 211 YFSIRKFRYRNR-----IITNHNKLLNKMHNID------GIKTGYTRNSGFNIVTSLRYK 259
           Y +  + R+  R      I N N+LL     ++      GIK GYT N+G  +V + R  
Sbjct: 231 YCARTEARFPGRDGGSYGIRNTNRLLTGADGVEPYPGLIGIKNGYTSNAGHTLVAAARQD 290

Query: 260 DDPIVAVVM 268
              +V  VM
Sbjct: 291 GRTLVVTVM 299


>gi|311278881|ref|YP_003941112.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Enterobacter
           cloacae SCF1]
 gi|308748076|gb|ADO47828.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Enterobacter
           cloacae SCF1]
          Length = 314

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 23/227 (10%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N NQ+      D  R  AS+TK+MT  ++ +      L L+  +   K   +Q
Sbjct: 42  SAMIVDLNTNQVIYASDPDLVRPMASITKLMTAMVVLD----AHLPLDEML---KVDISQ 94

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G    F   M+ KAK 
Sbjct: 95  TPEMKGVYSRVRLNSEISRKNMLLLALMS-SENRAAASLAHHYPGGYDAFIRAMNAKAKA 153

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIIT- 225
           +GM +T Y   +GL   N ++TARD   L ++  K +P   +  + ++    +RN   T 
Sbjct: 154 LGMTHTRYVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTKEDTATFRNPAYTL 211

Query: 226 ---NHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              N N L+ + + NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 212 PFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVMNNRPVAMVVM 258


>gi|300857885|ref|YP_003782868.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685339|gb|ADK28261.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302330165|gb|ADL20359.1| putative peptidoglycan synthesis related protein [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275848|gb|ADO25747.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
           pseudotuberculosis I19]
          Length = 404

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 102/239 (42%), Gaps = 17/239 (7%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++   +   K    RY PAS+ K +   +  +     +L+L  ++ ++   A Q  
Sbjct: 97  MVFDLDNGDVIATKDPHGRYRPASVIKALLALVALD-----ELNLKAKVKITAEDANQEG 151

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S +   +   +T EQ +  L+  S ND + A  + + G  K    + +  A  +G  +T 
Sbjct: 152 SAVGYVDGVEYTNEQLLYGLLLNSGNDAAHALAQRLGGDNKTLEKVNA-LAHSLGTVDTY 210

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT------NHNK 229
             + SGL      T+A D A++     KN P + K  +           T      N N 
Sbjct: 211 AASYSGLDAPGMSTSAHDLALIYSHAWKN-PTFAKMVATEHIELPGNAATPTFQVWNDNG 269

Query: 230 L-LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD-QKALELITS 286
           L LN  H I G KTGYT ++    V +       + AV++     Q R  Q+A +LI +
Sbjct: 270 LFLNDEHGIGG-KTGYTDDAHHTFVGAKNIDGRRLAAVILDTTVEQGRPWQQAQKLIDA 327


>gi|323940796|gb|EGB36984.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E482]
          Length = 337

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 29  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 81

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 82  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 140

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 141 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 198

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 199 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 245


>gi|225075807|ref|ZP_03719006.1| hypothetical protein NEIFLAOT_00823 [Neisseria flavescens
           NRL30031/H210]
 gi|224952840|gb|EEG34049.1| hypothetical protein NEIFLAOT_00823 [Neisseria flavescens
           NRL30031/H210]
          Length = 310

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 105/225 (46%), Gaps = 20/225 (8%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           AS++K+M+  ++ +       HL+   P++ T A  +    +   L   T  T  + +  
Sbjct: 96  ASISKLMSAMVVLDA------HLDMNEPITITEAEIDRLKGTGSRLSIGTTLTRGELLHL 149

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD- 193
            +  S N  + A G    G    F   M+ KA+ +GM ++ +   +GL+ +N ++TARD 
Sbjct: 150 SLMSSENRATHALGRTYPGGLSAFVAAMNAKAQSLGMSSSRFYEPTGLNFQN-VSTARDL 208

Query: 194 -----QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK-MHNIDGIKTGYTRN 247
                 A    L+RKN      Y S+     R     N N L+ +   NI+  KTGY R 
Sbjct: 209 NRMVAAASKYPLIRKN--STSNYGSVWTVNGRQNY-KNSNALVREGSWNIELQKTGYIRE 265

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +G ++V     ++ PI  V++  P+S  R   A ++ +  L++++
Sbjct: 266 AGRSMVVKANVQNQPITIVLLNSPSSTTRVNDARKIESWMLQRRS 310


>gi|291441236|ref|ZP_06580626.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
           14672]
 gi|291344131|gb|EFE71087.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
           14672]
          Length = 385

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 12/129 (9%)

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           + G  +  A  M  KA  +G ++T  ++  G     Q+++A D A+ G    +N P++ +
Sbjct: 151 LGGGWRTTAERMEAKAHALGARDTRVESPDGYDAPGQVSSAFDLAVFGRAGLRN-PEFAR 209

Query: 211 YFSIRKFRYRNR-----IITNHNKLLNKMHNID------GIKTGYTRNSGFNIVTSLRYK 259
           Y +  + R+  R      I N N+LL     ++      GIK GYT N+G  +V + R  
Sbjct: 210 YCARTEARFPGRDGGSYGIRNTNRLLTGADGVEPYPGLIGIKNGYTSNAGHTLVAAARQD 269

Query: 260 DDPIVAVVM 268
              +V  VM
Sbjct: 270 GRTLVVTVM 278


>gi|167551122|ref|ZP_02344877.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205324035|gb|EDZ11874.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 315

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 104/233 (44%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS+TK+MT  ++ +     +L LN    + K   +Q
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD----ARLPLNE---ILKVDISQ 94

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +   +  G    F   M+ KAK 
Sbjct: 95  TPEMKGVYSRVRLNSEISRKNMLLLALMS-SENRAAASLAHYYPGGYDAFIKAMNAKAKA 153

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM +T +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 154 LGMTHTRFVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTREDMATFSHPAYTL 211

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 212 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 258


>gi|241760382|ref|ZP_04758477.1| D-alanyl-D-alanine endopeptidase [Neisseria flavescens SK114]
 gi|261379793|ref|ZP_05984366.1| penicillin-binding protein 7 [Neisseria subflava NJ9703]
 gi|241319260|gb|EER55738.1| D-alanyl-D-alanine endopeptidase [Neisseria flavescens SK114]
 gi|284797478|gb|EFC52825.1| penicillin-binding protein 7 [Neisseria subflava NJ9703]
          Length = 318

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 20/225 (8%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           AS++K+M+  ++ +       HL+   P++ T A  +    +   L   T  T  + +  
Sbjct: 104 ASISKLMSAMVVLD------AHLDMNEPITITEAEIDRLKGTGSRLSIGTTLTRGELLHL 157

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD- 193
            +  S N  + A G    G    F   M+ KA+ +GM ++ +   +GL+ +N ++TARD 
Sbjct: 158 SLMSSENRATHALGRTYPGGMSAFVAAMNAKAQSLGMTSSRFYEPTGLNFQN-VSTARDL 216

Query: 194 -----QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK-MHNIDGIKTGYTRN 247
                 A    L+RKN    Y        R   +   N N L+ +   NI+  KTGY R 
Sbjct: 217 NRMVAAASKYPLIRKNSTSNYGSVWTANGRQNYK---NSNALVREGSWNIELQKTGYIRE 273

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +G ++V     ++ PI  V++  P+S  R   A ++ +  L++++
Sbjct: 274 AGRSMVVKANVQNQPITIVLLNSPSSTTRVNDARKIESWMLQRRS 318


>gi|332284463|ref|YP_004416374.1| putative penicillin-binding protein precursor [Pusillimonas sp.
           T7-7]
 gi|330428416|gb|AEC19750.1| putative penicillin-binding protein precursor [Pusillimonas sp.
           T7-7]
          Length = 355

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 105/229 (45%), Gaps = 18/229 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQ 130
           DE R  AS++K+MT  ++ E      L ++  + +S     +   S+  L   T  +   
Sbjct: 130 DEVRPIASISKLMTALVVAE----AGLAMDEMLTISDADVDRLRYSRSRLPVGTELSRAD 185

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +   +  S N  + A G +  G    F   M++KA+ +GM+NT +   +GL   N ++T
Sbjct: 186 MLHLALMSSENRAAHALGRYYPGGMPAFVRAMNDKARALGMRNTRFVEPTGLSSDN-VST 244

Query: 191 ARDQAILGILLRKNFPQ--YYKYFSIRKF-----RYRNRIITNHNKLL-NKMHNIDGIKT 242
           +RD   L  LLR        ++Y +  K+     R R  +  N N+L+ N   +I   KT
Sbjct: 245 SRD---LVKLLRATTEHKLIHRYTTDDKYKVTVGRGRQLVYNNTNRLVGNSKWDIKVSKT 301

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
           G+   +G  +V   R  D   VA+V+   T+  R   A+ L T  +E +
Sbjct: 302 GFINEAGECLVMLTRI-DQRDVAIVLLNSTNHSRIGDAVRLRTLLVENE 349


>gi|315652015|ref|ZP_07905016.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saburreum DSM
           3986]
 gi|315485662|gb|EFU76043.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saburreum DSM
           3986]
          Length = 492

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 109/242 (45%), Gaps = 22/242 (9%)

Query: 56  SIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA--- 111
           +I++D +   +  G    E  YPAS+TK++T  I+ E       +L+  +  S+ A    
Sbjct: 51  AILMDADSGAVIYGKNMHEHYYPASITKILTALIVVE-----NCNLDDTVTFSRNAVYNV 105

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S   +      T    + A++ +SAN+ + A  E  +GS   FA +M++KA  +G 
Sbjct: 106 ESGSSSAGIDVGDTLTVRDCLYAMLLQSANEAANALAEHTAGSIDAFAKMMNDKAASLGC 165

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKN-------FPQYYKYFSIRKFRYRNRII 224
           +++ + N SGL+D    T+A D A++     KN          YY      +      + 
Sbjct: 166 KDSHFANPSGLNDPEHYTSAYDYALISRAAFKNPTVTEIDSATYYNLPPTSRVPTGQTLY 225

Query: 225 TNHNKLLNKMHN-----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           ++H+ L     N     I G KTGYT  +G  +VT  R     ++ VV+    +   D +
Sbjct: 226 SHHSMLRKNSGNYYKNAICG-KTGYTTLAGNTLVTYARTDKIGLITVVLNGNKTHYIDTQ 284

Query: 280 AL 281
           +L
Sbjct: 285 SL 286


>gi|320176628|gb|EFW51670.1| Murein-DD-endopeptidase [Shigella dysenteriae CDC 74-1112]
          Length = 297

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 104/233 (44%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S +++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 29  SVMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 81

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 82  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 140

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 141 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 198

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 199 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 245


>gi|160944238|ref|ZP_02091467.1| hypothetical protein FAEPRAM212_01747 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444420|gb|EDP21424.1| hypothetical protein FAEPRAM212_01747 [Faecalibacterium prausnitzii
           M21/2]
          Length = 466

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 18/217 (8%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTT 128
           D+ +Y ASLTK+MT  ++ E    K L+    +P   T      QN +   +  +   T 
Sbjct: 97  DQQKYVASLTKLMTALLLVE--SGKDLNGEVTVPTDLTQEFKDIQNANGTTIGLRIGETV 154

Query: 129 EQGIL--ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
            +  L  A++  SAND ++     + GS   F   M+ KA ++G   T +  A GL D  
Sbjct: 155 RRIDLLNAMLIVSANDAASVIAWDVGGSVVGFVQQMNAKAAELGCTGTNFTCAHGLFDYG 214

Query: 187 QITTARDQAILGILLRKN--FPQYYKYFS----IRKFRYRNRIITNHNKLLNKMHN---- 236
            ++TA+D A +     +N  F Q     S        R     I++ N L+N   +    
Sbjct: 215 NVSTAQDLAKIAAACAENQTFAQVAGTASYVLPATNLRKAEHTISSSNSLMNSESSNYRE 274

Query: 237 -IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            +  +K G+T  +G  IV   +        V++G  T
Sbjct: 275 YVKWVKGGFTTLAGRCIVAFAQQDGHNYGLVILGCDT 311


>gi|291557828|emb|CBL34945.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum V10Sc8a]
          Length = 734

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 90/214 (42%), Gaps = 27/214 (12%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-----NPSKLYLKEKTYFTTEQG 131
           PA L K+M   I  E     K + N  + VS +   Q       + + L+     +    
Sbjct: 42  PAFLIKIMASIIALE-----KCNPNDTVTVSDSVIKQISNWKGSASINLEAGEKISVLDL 96

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           I +++  SAND   A  EFI GS  KFA +M  KAK IG  +T    A G     Q + A
Sbjct: 97  IYSMMLVSANDSLFALAEFICGSLDKFAAMMQEKAKSIGAADTTVTTADGRFTAEQYSNA 156

Query: 192 RDQAILGILLRKN-----FPQYYKYFSIRKFRYRNRIITNHNKLLN------KMHNIDGI 240
            D AI+      N          KY      +  +R + N N L+N      +     GI
Sbjct: 157 YDLAIICRYCMTNRMFRTIAATDKYTIPATNKNGSRDLQNTNLLINSGNRRYRYETAIGI 216

Query: 241 KTGYTRNSGFNIVTSL-----RYKDDPIVAVVMG 269
           K+GYT  S   +  S      ++ ++ ++A+++G
Sbjct: 217 KSGYTARSKSCLACSALPPANKFGEE-VLAIILG 249


>gi|262183779|ref|ZP_06043200.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 406

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 20/202 (9%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++  ++   K    RY PAS+ K +   ++ E     +L L+ +I  +   A+   
Sbjct: 94  MVSDLDTGEIIAMKDPNGRYRPASIIKALLALVVIE-----ELPLDQRITATLDDASVEG 148

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S + L     +T EQ +  L+  S ND + A  + + G E+    + + KA++IG ++T+
Sbjct: 149 SAVGLGPDGVYTVEQLLQGLLMASGNDAAHALAQAVGGDEEALEKVNA-KAQEIGTRSTV 207

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQ--YYKYFSIRKFRYRNRI------ITNH 227
             + SGL      T+A D   + ++ R  F    + +        +          + N 
Sbjct: 208 AASYSGLDAAGMSTSAAD---ISLIYRAAFANDTFARIVDTEHVDFPGWGEMPGYELWND 264

Query: 228 NKL-LNKMHNIDGIKTGYTRNS 248
           N L LN    I G KTGYT ++
Sbjct: 265 NGLFLNDPDGIGG-KTGYTEDA 285


>gi|145225445|ref|YP_001136123.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium gilvum
           PYR-GCK]
 gi|315445798|ref|YP_004078677.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1]
 gi|145217931|gb|ABP47335.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium gilvum
           PYR-GCK]
 gi|315264101|gb|ADU00843.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1]
          Length = 407

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 97/225 (43%), Gaps = 27/225 (12%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQS-KKLHLNTQIPVSKTAATQN 114
           +V D++   +   +    R+ PAS+ K++T       +Q+ + L L   +P +   A Q 
Sbjct: 99  LVADLDSGDVIAARDPHGRHRPASIIKVLT------AMQALRDLPLMKTVPGTPEDAAQE 152

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK----AKKIG 170
            +K+ + E   +T    +  L+  S ND + A    + G +        NK    A+K+G
Sbjct: 153 GTKVGVGEGGVYTVNDLLHGLLMYSGNDAAHALAMQMGGMDTAL-----NKINVLAQKLG 207

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYRNR-----I 223
            ++T     SGL      T+  D   +G+  R  +  P +    + R  ++  R      
Sbjct: 208 ARDTRVATPSGLDGPGMSTSVYD---MGLFYRYAWHNPVFADIVATRATQFPGREGAGYP 264

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           I N NKLL       G KTGYT ++G   V +       +VAV+M
Sbjct: 265 IENDNKLLANYPGALGGKTGYTDDAGQTFVGAAERDGRRLVAVLM 309


>gi|146182375|ref|XP_001024481.2| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila]
 gi|146143834|gb|EAS04236.2| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila SB210]
          Length = 583

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 121/262 (46%), Gaps = 42/262 (16%)

Query: 62  NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHL---NTQIPVSKTAATQNPSKL 118
           NK  + G  +++ R  ASLTKMMT YI+  Y+  +KL+L    T   VS  AA Q  +  
Sbjct: 307 NKKLVAGQNENQVREIASLTKMMTCYIVVHYI--RKLNLIPEKTYFKVSAHAANQPGTTA 364

Query: 119 YLKEKTYFTTEQGILALITRSAND----VSTAFGEFI-------------SGSEKKFAI- 160
            L E    +    +  ++  S ND    ++  FG ++             + + KK  + 
Sbjct: 365 GLTEGDVVSIMDLLYGMMLPSGNDAAFVLAENFGVYLYMQTDKFKEKYGNAQTNKKLKVK 424

Query: 161 --------LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI------LLRKNFP 206
                    M++ A+K+ MQ+T + N  GL  K   +T+ D  +L        L+++   
Sbjct: 425 NPITYFIKEMNDFAEKLNMQDTYFTNPHGLMHKKNKSTSYDVGLLSYYLIHDPLIKQIMA 484

Query: 207 Q--YYKYFSIRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           Q  Y         + +N   I  N NK+L K   + G+KTG T ++G  + +   +++  
Sbjct: 485 QQTYNANIMTETLQLKNPPTIWKNTNKMLKKTGFL-GLKTGITPSAGPCLASWYNHENIN 543

Query: 263 IVAVVMGMPTSQERDQKALELI 284
           ++ +++G  + +ER  + ++L+
Sbjct: 544 LIIILLGAKSLEERWVETVQLL 565


>gi|268610245|ref|ZP_06143972.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus flavefaciens
           FD-1]
          Length = 471

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 121/294 (41%), Gaps = 55/294 (18%)

Query: 33  KILFLSIIMISMASELHAKPKY--------------SSIVIDVNKNQMTGFKQ-DEPRYP 77
           K LF +I  + MA    + PK               S+IVI+++ + +   K  D  + P
Sbjct: 2   KKLFAAIASVVMAVPFISAPKAEAISFPLKNQIQSESAIVINMDVDTVIHEKNADTKQMP 61

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTY------------ 125
             L  +M   +  E       ++N ++ V  +         YL E  Y            
Sbjct: 62  GPLVNIMAAVVCLENCP----NINAEVTVHSSVYE------YLNETEYKDDLRWADIYDE 111

Query: 126 --FTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
              T    + A++  S+ + S     ++  G+   F  +M++KA++IG++NT + NA+G+
Sbjct: 112 DVLTVTDLLYAMMLTSSMEASETLAYYVGDGNTDNFIKMMNDKAEEIGLENTHFTNATGM 171

Query: 183 HDKNQITTARDQA-----ILGILLRKNFPQYYKY-FSI----RKFRYRNRIITNHNKLLN 232
           +D  Q TTARD A      L + L +     ++Y  SI    R   +   I T+ N +++
Sbjct: 172 YDTAQYTTARDMAKLTQYALTVPLFETIATTFQYNPSIPNPDRHKSHEEWIWTHSNGMMD 231

Query: 233 K-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
                    + GIKT     +G NI+       +  +AV++  P +      A 
Sbjct: 232 PSSGDYYSGMKGIKTANLEMAGRNIIAMASRDGNKYLAVLLKAPLNDADGNPAF 285


>gi|257092407|ref|YP_003166048.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044931|gb|ACV34119.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 417

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 101/237 (42%), Gaps = 29/237 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           AS+TK+MT  ++ +         N Q P++ +    +    S+  L+  +    E  +L 
Sbjct: 195 ASITKVMTAMVVLDS------QPNLQAPITISDDDVDYLRGSRSRLQVGSVIPRETALLL 248

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A G    G    F   M+ KA  +GM  + +++ +GL + N ++TA D 
Sbjct: 249 ALMSSENRAANALGRHYPGGLTAFVAAMNRKAASLGMTRSHFEDPTGL-NSNNVSTAHD- 306

Query: 195 AILGILLRKNFPQYYKYFSIRKF----------RYRNRIITNHNKLLNKMHNIDGI-KTG 243
                 L +     ++Y  IR+F            R     N N+L++      G+ KTG
Sbjct: 307 ------LARMVAAAHRYPLIREFSTTSGARAEINGRELGFHNTNQLVSSPTWEIGLSKTG 360

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           Y + +G  +V   R  D P+V V++     Q R   A   I  ++E  +L  +   R
Sbjct: 361 YIQEAGKCLVMQARVADKPVVIVLLDSAGKQTRIGDA-NRIKRWMESASLSGRGPTR 416


>gi|227832361|ref|YP_002834068.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453377|gb|ACP32130.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 613

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 99/222 (44%), Gaps = 20/222 (9%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++  ++   K    RY PAS+ K +   ++ E     +L L+ +I  +   A+   
Sbjct: 301 MVSDLDTGEIIAMKDPNGRYRPASIIKALLALVVIE-----ELPLDQRITATLDDASVEG 355

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S + L     +T EQ +  L+  S ND + A  + + G E+    + + KA++IG ++T+
Sbjct: 356 SAVGLGPDGVYTVEQLLQGLLMASGNDAAHALAQAVGGDEEALEKVNA-KAQEIGTRSTV 414

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQ--YYKYFSIRKFRYRNRI------ITNH 227
             + SGL      T+A D   + ++ R  F    + +        +          + N 
Sbjct: 415 AASYSGLDAAGMSTSAAD---ISLIYRAAFANDTFARIVDTEHVDFPGWGEMPGYELWND 471

Query: 228 NKL-LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N L LN    I G KTGYT ++    V ++      + AV++
Sbjct: 472 NGLFLNDPDGIGG-KTGYTEDAHHTFVGAINRDGRRLQAVLL 512


>gi|76789288|ref|YP_328374.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
           A/HAR-13]
 gi|237802980|ref|YP_002888174.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804902|ref|YP_002889056.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|76167818|gb|AAX50826.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
           A/HAR-13]
 gi|231273202|emb|CAX10115.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231274214|emb|CAX11008.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
           B/Jali20/OT]
          Length = 437

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 110/251 (43%), Gaps = 36/251 (14%)

Query: 76  YPASLTKMMTLYIIFE--------YLQSKKLHLNTQIPVSKT-AATQNPSK--------L 118
           +PAS+TK+ T  +I          ++ +++  L +  P +K  +  ++P          +
Sbjct: 58  FPASMTKIATALLILRQYPDVLTRFITTRREPLTSITPQAKQQSGYRSPPHWLETDGMTI 117

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            LK K   +      AL+  SAND +    +    S   F   ++   +++G QNT + +
Sbjct: 118 QLKVKEEVSGWDLFHALLISSANDAANVLADACCQSVSAFMRQLNEFLRELGCQNTHFNS 177

Query: 179 ASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY--------RNRIITNHNKL 230
             GLH  +  TTARD   L +++++   +      IR   Y          R++++ NKL
Sbjct: 178 PHGLHHPDHYTTARD---LSLIMKEALKEPLFRQVIRTASYTMEATNLSPERVLSSTNKL 234

Query: 231 LNKMHN-----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM--PTSQERDQKALEL 283
           L+           G KTG T+++G NI+ +    +  I+ V  G   P +Q   Q A+ L
Sbjct: 235 LSSSSTYFYPPCLGGKTGTTKSAGKNIIFAAEKNNRSIIVVAAGYFGPAAQLY-QDAIAL 293

Query: 284 ITSFLEKKTLK 294
                 ++ L+
Sbjct: 294 CEDLFNEQLLR 304


>gi|296103782|ref|YP_003613928.1| D-alanyl-D-alanine endopeptidase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058241|gb|ADF62979.1| D-alanyl-D-alanine endopeptidase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 307

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 102/233 (43%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS+TK+MT  ++ +      L L+ ++   K   + 
Sbjct: 43  SAMIVDLNTNKVIYASHPDLVRPIASITKLMTAMVVLD----AHLPLDEKL---KVDISH 95

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G    F   M+ KAK 
Sbjct: 96  TPEMKGVYSRVRLNSEISRKNMLLLALMS-SENRAAASLAHHYPGGYDAFIRAMNAKAKA 154

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 155 LGMNNTRFVEPTGLSIHN-VSTARDLTKL-LIASKQYPLIGQLSTTREEMATFANPAYTL 212

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V    +   P+  VVM
Sbjct: 213 PFRNTNHLVYREN------WNIQLTKTGFTNAAGHCLVMRTVFNGKPVALVVM 259


>gi|89901123|ref|YP_523594.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodoferax ferrireducens
           T118]
 gi|89345860|gb|ABD70063.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Rhodoferax ferrireducens T118]
          Length = 346

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 94/209 (44%), Gaps = 21/209 (10%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQ 113
           ++VID   N++   K ++   P ASLTK+MT  +    LQ   L  +  I +S+    T+
Sbjct: 89  ALVIDQETNEVLFSKNEQAVLPIASLTKLMTGLV----LQEAHLPTDQMITISQDDVDTE 144

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   LK  T     + +   +  S N  + A      G    F  LM+ KA+ IGM +
Sbjct: 145 KGSTSRLKVGTTLNRGELLHLALMSSENRAAHALARSYPGGLPVFVGLMNAKAQLIGMTD 204

Query: 174 TIYKNASGLHDKNQITTARDQAIL------GILLRK--NFPQYYKYFSIRKFRYRNRIIT 225
           T Y   +GL  KNQ ++ARD A L        +LR+    P Y      R  +Y N    
Sbjct: 205 THYVEPTGLSSKNQ-SSARDLAKLVNVAHGDPILRELTTSPDYQVAVGNRTLQYNNT--- 260

Query: 226 NHNKLL-NKMHNIDGIKTGYTRNSGFNIV 253
             N+L+ N   +I   KTGY   +G  +V
Sbjct: 261 --NRLVKNPSWDIGLQKTGYISEAGRCLV 287


>gi|296111124|ref|YP_003621505.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc kimchii IMSNU
           11154]
 gi|295832655|gb|ADG40536.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc kimchii IMSNU
           11154]
          Length = 421

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 143/308 (46%), Gaps = 42/308 (13%)

Query: 26  RNIQLMG-KILFLSIIMISMASELHAKP------KYSSIVIDVNKNQMTGFKQDEPRYP- 77
           R I+++G  ++ L ++  ++++   AKP        S+IVID    Q+   K  +   P 
Sbjct: 2   RRIKVIGVSVVMLFLMTTTVSASTLAKPLDIKQDVSSAIVIDAGTGQILAEKNSDELGPI 61

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP---SKLYLKEKTYFTTEQGI 132
           AS +K++T Y + + + S K+  + ++ +SK A  + Q+    S L +K     T  +  
Sbjct: 62  ASQSKLLTAYAVLKAIDSGKIKWSDKVTISKKADLSKQDSHMFSHLAVKAGDRLTVRELY 121

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD----KNQI 188
             +IT S+ND + A  E+++  +   A  + + A+++ +  + + N++G  +    +N++
Sbjct: 122 NTMITLSSNDSAFALAEYLTPKKMTTAQALQSWAEELQLTKSKWYNSAGQVNQDAFENKV 181

Query: 189 TTARDQAI-------LGILLRKNF---PQYYKYFSIRKFRY---RNRIIT-------NHN 228
           T+A D A+       + ++ R+     P   K  +     Y   +N ++        N  
Sbjct: 182 TSAPDNAVNLASPKHVAMIAREIVRLDPDIRKLATSTHVSYHLTKNYVVNEPTEMTKNWP 241

Query: 229 KLLNKMH-NIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVMGMPT---SQERDQKALEL 283
            L+N  H  I+G+KTG T  SG      ++       + VV G  +     +R QK L +
Sbjct: 242 YLINPNHLIIEGLKTGSTPESGAAFTGIIKDASGHEFITVVNGAASYMDEVQRYQKTLNI 301

Query: 284 ITSFLEKK 291
           + + L  K
Sbjct: 302 VNAVLADK 309


>gi|255025482|ref|ZP_05297468.1| hypothetical protein LmonocytFSL_02553 [Listeria monocytogenes FSL
           J2-003]
          Length = 202

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 77/151 (50%), Gaps = 19/151 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPS--KLYLKEKTYFTTEQGIL 133
           AS+TKMM  Y++ E +   KL  + ++ +S+ A   +Q+ S   + L+    +T ++   
Sbjct: 53  ASMTKMMDEYLLLEAIDKGKLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYE 112

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---------- 183
           A+   SAN  + A  E I+GSEK+F   M+ KA ++ +    + NA+GL+          
Sbjct: 113 AMAIYSANGAAIAISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQV 172

Query: 184 ----DKNQITTARDQAILGILLRKNFPQYYK 210
               D+N++ TAR  A L   L  ++P   K
Sbjct: 173 GGPKDENKM-TARGMAKLAKHLINDYPDVLK 202


>gi|121610552|ref|YP_998359.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
           [Verminephrobacter eiseniae EF01-2]
 gi|121555192|gb|ABM59341.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Verminephrobacter eiseniae EF01-2]
          Length = 372

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 96/209 (45%), Gaps = 21/209 (10%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-Q 113
           ++V+D + N++   K D    P ASLTK+MT  +I +     KL ++  + +++     +
Sbjct: 125 ALVVDQDTNEVLLSKNDHAVLPIASLTKLMTGLLISQ----AKLPMDELLTITQDDVDME 180

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+  L   T  T    +   +  S N  + A G    G    F   M+ +A+++GM +
Sbjct: 181 KGSRSRLTVGTTLTRGAMLHLALMASENRAAHALGRTYPGGLAAFVAQMNAQARRLGMTD 240

Query: 174 TIYKNASGLHDKNQITTARDQAIL------GILLRK--NFPQYYKYFSIRKFRYRNRIIT 225
           T Y   +GL  +NQ ++ARD A L        LLR+    P Y      +  +Y      
Sbjct: 241 THYAEPTGLSSRNQ-SSARDLATLVNVTHADPLLRELSTSPDYEVEVGRKTLQY-----N 294

Query: 226 NHNKLL-NKMHNIDGIKTGYTRNSGFNIV 253
           N N+L+ N   +I   KTGY   +G  +V
Sbjct: 295 NTNRLVKNPTWDIGLQKTGYISEAGRCLV 323


>gi|325830849|ref|ZP_08164233.1| serine-type D-Ala-D-Ala carboxypeptidase [Eggerthella sp. HGA1]
 gi|325487256|gb|EGC89699.1| serine-type D-Ala-D-Ala carboxypeptidase [Eggerthella sp. HGA1]
          Length = 347

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 106/255 (41%), Gaps = 33/255 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
            + ++D +     G   D+    ASLTK+MT  +  ++L +     +T I V+  AA+  
Sbjct: 60  CAALMDEDGTLWFGRNADDAAQIASLTKIMTAIVAADWLDA-----STMIEVTPEAASVG 114

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAF--------------GEFISGSEKKFAI 160
            S   L +    T +  + AL+T S ND ++A               G      E  F  
Sbjct: 115 ESSAGLAQGDSMTFDDALKALLTASGNDAASAIAQAAGARMLAQKGSGGDAYACEAAFVE 174

Query: 161 LMSNKAKKIGMQNTIYKNASGLH----DKNQITTARD-----QAILGI-LLRKNFPQYYK 210
            M+ KA ++G++N+ + N  GL      + Q + A D     +A + I L+R N      
Sbjct: 175 AMNAKAAELGLENSFFANPHGLDFDAFAQGQYSCAADVATMLRAAMQIDLVRANIGFSQA 234

Query: 211 YFSI-RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVM 268
             ++ R        + N + LL         KTGYT  +G    T++   D     AVV+
Sbjct: 235 DITVQRDGAPVTLALENTDALLGSYPGACAAKTGYTLAAGPCAATAVNRGDGHEYYAVVL 294

Query: 269 GMPTSQER--DQKAL 281
           G  +  +R  D  AL
Sbjct: 295 GSSSKPQRFVDSAAL 309


>gi|242372443|ref|ZP_04818017.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus epidermidis
           M23864:W1]
 gi|242349865|gb|EES41466.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus epidermidis
           M23864:W1]
          Length = 393

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 93/199 (46%), Gaps = 23/199 (11%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGI 132
           PASLTKMMT+Y+  + ++S KLH+N ++ ++   A      N S + LK    +T ++ +
Sbjct: 72  PASLTKMMTMYLTLDAVKSGKLHMNDKVKITNQQAQLSRKSNLSSVPLKAGQIYTVKEIL 131

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-------- 184
                 S+N  +   GE +S S   F   M+ +AK+  M +T Y + +G           
Sbjct: 132 SQTALASSNAAALILGEKVSKSTSTFTDQMNQQAKQFHMNHTHYTSPTGADTHLLGPSAP 191

Query: 185 ---KNQI---TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM---- 234
              KNQ    +T++D  I+   + KN P+  K         + +   + N  L       
Sbjct: 192 EKYKNQGKTQSTSKDMNIMMYEMLKNHPEILKITKKTSETQKGQTFKSTNLSLKGQPKYY 251

Query: 235 HNIDGIKTGYTRNSGFNIV 253
              DG+KTG T +SG+++ 
Sbjct: 252 KGTDGLKTG-TSDSGYSLA 269


>gi|167750846|ref|ZP_02422973.1| hypothetical protein EUBSIR_01829 [Eubacterium siraeum DSM 15702]
 gi|167656281|gb|EDS00411.1| hypothetical protein EUBSIR_01829 [Eubacterium siraeum DSM 15702]
          Length = 734

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 90/214 (42%), Gaps = 27/214 (12%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-----NPSKLYLKEKTYFTTEQG 131
           PA L K+M   I  E     K + N  + VS +   Q       + + L+     +    
Sbjct: 42  PAFLIKIMASIIALE-----KCNPNDTVTVSDSVIKQISNWKGSASINLEAGEKISVLDL 96

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           I +++  SAND   A  EFI GS  KFA +M  KAK IG  +T    A G     Q + A
Sbjct: 97  IYSMMLVSANDSLFALAEFICGSLDKFAAMMQEKAKSIGAADTTVTTADGRFTAEQYSNA 156

Query: 192 RDQAILGILLRKN-----FPQYYKYFSIRKFRYRNRIITNHNKLLN------KMHNIDGI 240
            D AI+      N          KY      +  +R + N N L+N      +     GI
Sbjct: 157 YDLAIICRYCMTNRMFRTIAATDKYTIPATNKNGSRDLQNTNLLINSGNRRYRYETAIGI 216

Query: 241 KTGYTRNSGFNIVTSL-----RYKDDPIVAVVMG 269
           K+GYT  S   +  S      ++ ++ ++A+++G
Sbjct: 217 KSGYTARSKSCLACSALPPANKFGEE-VLAIILG 249


>gi|117927602|ref|YP_872153.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidothermus
           cellulolyticus 11B]
 gi|117648065|gb|ABK52167.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidothermus
           cellulolyticus 11B]
          Length = 465

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 111/262 (42%), Gaps = 29/262 (11%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPR--YPASLTKMM 84
           L G +L +  ++ S    L   P  ++   IV D +  ++   K D  R   PAS  K++
Sbjct: 90  LGGPLLGVHGVVTSTGENLPPLPPTTATSFIVADADTGEVLAAK-DAHRQLAPASTLKVL 148

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T   +       +L     + V   A   + +K+ +     ++    + A++  SAND +
Sbjct: 149 TAITLI-----PRLDPAAGVVVQPDAVRVDGTKVGVVAGQTYSVRDLLTAMLMMSANDAA 203

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  +   G E+  A  M+ +A  +  ++T+ K   GL   NQ ++A D   L ++ R  
Sbjct: 204 VALADANGGLEQTLA-EMNAEAAWLNARDTVAKTPDGLDAPNQASSAYD---LALMFRAG 259

Query: 205 F--PQYYKYFSIRKFRY-----RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              P +  Y SI + ++      +  I  H++LL     + G K GYT  +  + V + R
Sbjct: 260 LAIPAFRTYLSITRMQFPAPKGASYQIQTHDRLLLTYPGMIGGKNGYTVAAQASYVGAAR 319

Query: 258 YKDDPIVAVVMGMPTSQERDQK 279
                I+  VM       RDQ 
Sbjct: 320 RNGHTIIVAVM-------RDQP 334


>gi|312171829|emb|CBX80086.1| penicillin-binding protein 7 [Erwinia amylovora ATCC BAA-2158]
          Length = 316

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 106/230 (46%), Gaps = 29/230 (12%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS---KTA 110
           S++++D+N N++      D  R  AS+TK+MT+ +           L+  +P+    K  
Sbjct: 46  SAMIVDLNSNKVIYQSHPDRVRPIASITKLMTVMVT----------LDAHLPLDEMLKVD 95

Query: 111 ATQNPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
            +  P    +  +    +E       +LAL++ S N  + +      G    F   M+ K
Sbjct: 96  ISHTPQMRGIYSRVRLNSELSRRNMMLLALMS-SENRAAASLAHHYPGGYDAFIRAMNAK 154

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRN 221
           A+ +GM +T Y   +GL  +N ++TARD + L +L  + +P   +  + R+    FR  N
Sbjct: 155 ARALGMSHTRYVEPTGLAIEN-VSTARDLSKL-LLATRRYPLIGQLSTTREDMASFRRPN 212

Query: 222 RIIT--NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            I+   N N L+ +   NI   KTG+T  +G  +V        P+  VV+
Sbjct: 213 YILPFRNTNHLVYRPDWNIQLTKTGFTNEAGHCLVMRTVINQRPVSLVVL 262


>gi|289551493|ref|YP_003472397.1| D-alanyl-D-alanine carboxypeptidase/Penicillin binding protein PBP4
           [Staphylococcus lugdunensis HKU09-01]
 gi|289181024|gb|ADC88269.1| D-alanyl-D-alanine carboxypeptidase/Penicillin binding protein PBP4
           [Staphylococcus lugdunensis HKU09-01]
          Length = 432

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 22/149 (14%)

Query: 69  FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKE 122
           +  ++  Y AS+TK+MT+Y+  E ++   L L+ ++ +++      T    + +KLY  E
Sbjct: 67  YHGNKKWYLASMTKLMTMYLTLEAVKKGDLSLDDKVKITQNHYRMSTLPELSNTKLYPGE 126

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
              +T  + +   ++ S+N  +      +SG+   F  LM+ KAK++GM +T + N +G 
Sbjct: 127 --VYTIAELLQITVSNSSNAAALILANKVSGNVTSFTKLMNKKAKELGMTHTYFTNPTGA 184

Query: 183 --------------HDKNQITTARDQAIL 197
                         +D N  +TA+D AIL
Sbjct: 185 ENTQLQEFAPKLTTNDNNSTSTAKDYAIL 213


>gi|187735971|ref|YP_001878083.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187426023|gb|ACD05302.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 323

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 120/253 (47%), Gaps = 41/253 (16%)

Query: 37  LSIIMISMA------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYII 89
           LS+ ++++A      ++   +P Y  I I+ N  ++      E + P ASL+++ T  + 
Sbjct: 4   LSLFLLTLACVFQFSAQAQQRPSY--IAIEANSGKLLFSSNAEEKRPVASLSQVATAMVA 61

Query: 90  FEYLQSKKLHLNTQIPVSKTA---ATQNP------SKLYLKEKTYFTTEQGILALITRSA 140
            +++   +L L+T I V + A      NP       +L L++  Y T    +L     SA
Sbjct: 62  LDWVARTRLPLDTFIAVPQEAFGLRAGNPMDLQPGDRLTLRDALYST----LLGSDNVSA 117

Query: 141 NDVSTAFG-EFIS----GSE-KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT--AR 192
             V++  G + +S    G+    F   M+N A+ + M  T +    GL   N ++T  A 
Sbjct: 118 LTVASFVGRDLVSRRGGGAPIAAFVAEMNNLARSLRMAKTRFTAPHGLDAGNSVSTSCAL 177

Query: 193 DQAILGILLRKNFPQYYKYFS--IRKFRYRNRI-------ITNHNKLLNKMHNIDGIKTG 243
           D A+LG+   +N P +    S   R+   +++        I+N+N+L++    +DGIK G
Sbjct: 178 DMALLGVYSMQN-PAFCYIVSQASRRIEVQSQTKGRTMYDISNNNRLMSA-SGVDGIKAG 235

Query: 244 YTRNSGFNIVTSL 256
            +R +G  ++ S+
Sbjct: 236 TSRAAGPCLLLSV 248


>gi|315659004|ref|ZP_07911871.1| penicillin binding protein 4 [Staphylococcus lugdunensis M23590]
 gi|315496128|gb|EFU84456.1| penicillin binding protein 4 [Staphylococcus lugdunensis M23590]
          Length = 432

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 22/149 (14%)

Query: 69  FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK------TAATQNPSKLYLKE 122
           +  ++  Y AS+TK+MT+Y+  E ++   L L+ ++ +++      T    + +KLY  E
Sbjct: 67  YHGNKKWYLASMTKLMTMYLTLEAVKKGDLSLDDKVKITQNHYRMSTLPELSNTKLYPGE 126

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
              +T  + +   ++ S+N  +      +SG+   F  LM+ KAK++GM +T + N +G 
Sbjct: 127 --VYTIAELLQITVSNSSNAAALILANKVSGNVTSFTKLMNKKAKELGMTHTYFTNPTGA 184

Query: 183 --------------HDKNQITTARDQAIL 197
                         +D N  +TA+D AIL
Sbjct: 185 ENTQLQEFAPKLTTNDNNSTSTAKDYAIL 213


>gi|108798929|ref|YP_639126.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
           sp. MCS]
 gi|119868044|ref|YP_937996.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
           sp. KMS]
 gi|108769348|gb|ABG08070.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
           sp. MCS]
 gi|119694133|gb|ABL91206.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
           sp. KMS]
          Length = 264

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 90/212 (42%), Gaps = 26/212 (12%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL------QSKK 97
           A  L   P  + ++ D++  ++   +   EP  PAS  K++   ++ ++L      ++ +
Sbjct: 24  AVALPEGPAQAWLLADLDSGRVLASRNPYEPHAPASTIKVLLAMVVLDHLSPDNFARANR 83

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
            H   +            S + L     +TT Q + AL+  S ND +    + + G    
Sbjct: 84  SHTEVEC-----------SCVGLTPGQPYTTRQLLSALLMVSGNDAANMLADMLGGQRAA 132

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKN--QITTARDQAILGILLRK--NFPQYYKYFS 213
            A  M+ KA  +G ++T   + SGL       ITT  D   L ++LR    +P   +   
Sbjct: 133 VAA-MNRKAALVGAKSTRASSPSGLDGPGWESITTPHD---LAVMLRAALKYPLIAQIMR 188

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
                +  + +TN N+LL++       KTG+T
Sbjct: 189 SPTAPFPGKTLTNQNELLSRYPGDIAGKTGFT 220


>gi|292487716|ref|YP_003530589.1| penicillin-binding protein 7 [Erwinia amylovora CFBP1430]
 gi|292898950|ref|YP_003538319.1| penicillin-binding protein 7 [Erwinia amylovora ATCC 49946]
 gi|291198798|emb|CBJ45907.1| penicillin-binding protein 7 [Erwinia amylovora ATCC 49946]
 gi|291553136|emb|CBA20181.1| penicillin-binding protein 7 [Erwinia amylovora CFBP1430]
          Length = 316

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 106/230 (46%), Gaps = 29/230 (12%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS---KTA 110
           S++++D+N N++      D  R  AS+TK+MT+ +           L+  +P+    K  
Sbjct: 46  SAMIVDLNSNKVIYQSHPDRVRPIASITKLMTVMVT----------LDAHLPLDEMLKVD 95

Query: 111 ATQNPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
            +  P    +  +    +E       +LAL++ S N  + +      G    F   M+ K
Sbjct: 96  ISHTPQMRGIYSRVRLNSELSRRNMMLLALMS-SENRAAASLAHHYPGGYDAFIRAMNAK 154

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRN 221
           A+ +GM +T Y   +GL  +N ++TARD + L +L  + +P   +  + R+    FR  N
Sbjct: 155 ARALGMSHTRYVEPTGLAIEN-VSTARDLSKL-LLATRRYPLIGQLSTTREDMASFRRPN 212

Query: 222 RIIT--NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            I+   N N L+ +   NI   KTG+T  +G  +V        P+  VV+
Sbjct: 213 YILPFRNTNHLVYRPDWNIQLTKTGFTNEAGHCLVMRTVINQRPVSLVVL 262


>gi|294670433|ref|ZP_06735315.1| hypothetical protein NEIELOOT_02152 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307897|gb|EFE49140.1| hypothetical protein NEIELOOT_02152 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 313

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 11/221 (4%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALI 136
           AS++K+M+  ++ +     +L++N  I +++    +   +   L   T  T  Q +   +
Sbjct: 98  ASISKLMSAMVVLD----ARLNMNEVITITEDEIDRLKGTGSRLSVGTQLTRAQLLHLSL 153

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S N  + A G    G    F   M+ KA+ +GM N+ +   +GL  +N ++TA D   
Sbjct: 154 MSSENRATHALGRTYPGGMSAFVAAMNAKAQSLGMTNSRFYEPTGLDYRN-VSTAWDLNK 212

Query: 197 LGILLRKNFP----QYYKYFSIRKFRYRNRIITNHNKLLNK-MHNIDGIKTGYTRNSGFN 251
           L        P        Y S+     R +   N N L+ +   +I+  KTGY R SG +
Sbjct: 213 LAAAASNYAPITKNSTATYGSVYTSAGRQQNYKNTNALVREGTWDIELQKTGYIRESGRS 272

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +V   R   +P+  V++  PTS  R   A ++ +  +++ +
Sbjct: 273 MVVRARIGREPVTIVLLNSPTSTTRVNDARKIQSWMMQRPS 313


>gi|300310973|ref|YP_003775065.1| D-alanyl-D-alanine-endopeptidase [Herbaspirillum seropedicae SmR1]
 gi|300073758|gb|ADJ63157.1| D-alanyl-D-alanine-endopeptidase (penicillin-binding) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 366

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 25/226 (11%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLN-TQIPVSKTAATQ 113
           ++VID   +Q+   K      P AS+TK+MT  ++ E  Q+ +  L  T   V +    +
Sbjct: 115 ALVIDQANSQVLFEKNSGVALPIASVTKLMTALVVVEARQNMEEVLTVTDDDVDR----E 170

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   L+     + +  +   +  S N  ++A G    G    F   M+ KA+ +GM +
Sbjct: 171 KHSSSRLRVGATLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMMD 230

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----------NR 222
           T Y +++GL  +N + +ARD A L ++   N+P   +Y +  K+              NR
Sbjct: 231 TRYVDSTGLSSQN-VASARDLAKL-VVAAYNYPIIRQYSTDPKYMVEPSGHALQYNSSNR 288

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           + +      NK  +I   KTG+   +G  +V   R +  PIV V +
Sbjct: 289 LTS------NKEWDIGLQKTGFINEAGHCLVMYTRIEGRPIVMVFL 328


>gi|333022589|ref|ZP_08450653.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces sp.
           Tu6071]
 gi|332742441|gb|EGJ72882.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces sp.
           Tu6071]
          Length = 315

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 22/230 (9%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLK 121
             G K DE    AS TK+MT  ++ ++ +     L+ QI V +           S   L+
Sbjct: 79  WAGAKADESVPMASTTKIMTAIVVLKHPE----WLDRQITVKQEYRDYVQEVGASTADLQ 134

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGE-FISGSEKK-----FAILMSNKAKKIGMQNTI 175
                T  Q + A++  S  D + A  + F +G  ++     F   M+ +A+++G++ T 
Sbjct: 135 TGDTLTARQLLHAMLIPSGADAARALADTFGNGDTEEARITDFIAQMNAEAQQLGLKGTH 194

Query: 176 YKNASGLHDKNQITTARDQAILG--ILLRKNFP------QYYKYFSIRKFRYRNRIITNH 227
           + +  G+   N  +TARD A LG   +L+  F       QY           R     N 
Sbjct: 195 FDSVDGISQGNNHSTARDLAKLGQRAMLQPVFAEVVKNTQYKTEAPAANGHTRYYTWNNT 254

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           N+LL       G+KTG     G+ +V +    +  +V V++G  T +  D
Sbjct: 255 NELLGTYDGALGVKTGSGPEDGYCVVFAAERDNRTLVGVILGDDTGRFDD 304


>gi|291544768|emb|CBL17877.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. 18P13]
          Length = 470

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 12/136 (8%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT-----AATQNPSKLYLKE--- 122
           QDE   P +L  +MT  I  E  Q       TQ+ V  +          PS L   E   
Sbjct: 61  QDEKMMPGALVNLMTALICVENNQDLA---GTQVTVKGSLFDAFVDYSYPSDLRYGEIYR 117

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASG 181
              FT E+ + A++  S+ + S    + I  GS   F  +M+ KA++IGM+NT + N  G
Sbjct: 118 GDVFTLEELLYAMLLTSSCEASVVIADEIGHGSVPGFVAMMNLKAEEIGMKNTHFTNPDG 177

Query: 182 LHDKNQITTARDQAIL 197
            +++ Q+TTA D  ++
Sbjct: 178 RYNEYQVTTAGDMLLM 193


>gi|26248513|ref|NP_754553.1| D-alanyl-D-alanine endopeptidase [Escherichia coli CFT073]
 gi|227887189|ref|ZP_04004994.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 83972]
 gi|300978674|ref|ZP_07174364.1| beta-lactamase [Escherichia coli MS 45-1]
 gi|301048867|ref|ZP_07195861.1| beta-lactamase [Escherichia coli MS 185-1]
 gi|26108918|gb|AAN81121.1|AE016763_80 Penicillin-binding protein 7 precursor [Escherichia coli CFT073]
 gi|227835539|gb|EEJ46005.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 83972]
 gi|300299322|gb|EFJ55707.1| beta-lactamase [Escherichia coli MS 185-1]
 gi|300409606|gb|EFJ93144.1| beta-lactamase [Escherichia coli MS 45-1]
 gi|307554203|gb|ADN46978.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli ABU 83972]
 gi|315294501|gb|EFU53849.1| beta-lactamase [Escherichia coli MS 153-1]
          Length = 313

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS++K+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 45  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD----ARLPLDEKL---KVDISQ 97

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G  K F   M+ KAK 
Sbjct: 98  TPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYKAFIKAMNAKAKS 156

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 157 LGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTL 214

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +       + P+  VVM
Sbjct: 215 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLAMRTVINNKPVALVVM 261


>gi|228965491|ref|ZP_04126577.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228794221|gb|EEM41739.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 166

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 1/122 (0%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+I+ N  ++   K +E P   A+L+K+MT YI+ E L  +K+ L+  + +S      
Sbjct: 37  SAILINANSGEIVYKKNEETPVQSAALSKLMTEYIVLEQLNDRKIQLDDLVQISNEVFRV 96

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S + +      T    + AL+    N  + A  E I+G+E  F +LM+ K K+  +  
Sbjct: 97  ETSPIQVTSNDKTTVRDLLHALLLAGNNRSALALAEHIAGNEDNFTVLMNKKDKRTKVIT 156

Query: 174 TI 175
           TI
Sbjct: 157 TI 158


>gi|218458344|ref|ZP_03498435.1| putative penicillin-binding protein precursor [Rhizobium etli Kim
           5]
          Length = 122

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 53/87 (60%), Gaps = 5/87 (5%)

Query: 57  IVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           I++DV   ++   + +E     YPASLTK+MT+Y +F+ +++ ++ L+T I +SK AA Q
Sbjct: 38  ILVDVQTGRV--LEHEEAFRKWYPASLTKLMTVYTVFDAIRAGQISLDTPIVMSKRAAAQ 95

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSA 140
             +K+Y K     T +  +  L+ +SA
Sbjct: 96  PAAKMYFKPGQKLTLDSALKILLVKSA 122


>gi|260662683|ref|ZP_05863577.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus fermentum
           28-3-CHN]
 gi|260552764|gb|EEX25763.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus fermentum
           28-3-CHN]
          Length = 417

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 122/283 (43%), Gaps = 49/283 (17%)

Query: 30  LMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMT 85
           L+  + F +++  S  +  +A       ++I ID    Q+   K    RYP AS+ K++T
Sbjct: 12  LLVVVTFTTVLATSAGAVANASSTVDARAAITIDAETGQVLYEKNATKRYPIASVIKILT 71

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAA-TQNP---SKLYLKEKTYFTTEQGILALITRSAN 141
           L +I + ++  KL  + +I +SK  A   N    S + L E   +T +  + +++  SA+
Sbjct: 72  LAVIEQDIEQGKLKWDQKIKISKEVAKVANDWRFSNVQLNEGESYTVKSLVESMMIVSAD 131

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD---------------KN 186
             + A     +GS   F   M   AK+ G+ +    N  GL +               +N
Sbjct: 132 GSAEALALASAGSTAAFNQKMQAVAKEAGVTDAKIYNMIGLANGDLGEMRLKNVSKKAEN 191

Query: 187 QITTARDQAILGILLRKNFP------------------QYYKYFSIRKFRYRNRIITNHN 228
           Q++ A+D A +   L + +P                  Q Y+  +I     +N   + H 
Sbjct: 192 QLS-AKDVAKIARYLVEKYPSVLEITKQKFVNFQVSDSQQYEMVNINSMLPQNAAASTHG 250

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           +       +DG+KTG T +SG+  V +  +    ++ VV+ +P
Sbjct: 251 E-------VDGLKTGMTDSSGYCFVGTGTFNGRRLITVVLKVP 286


>gi|302540899|ref|ZP_07293241.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302458517|gb|EFL21610.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces
           himastatinicus ATCC 53653]
          Length = 319

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 97/219 (44%), Gaps = 26/219 (11%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYFT 127
           D  R  AS+TK+MT  ++   L ++ ++LN ++ V K       T   S   LK+    T
Sbjct: 72  DTKRQMASITKLMTAVVV---LDTRGVNLNKKVTVKKAYLDYIRTSGGSAADLKQGDKLT 128

Query: 128 TEQGILALITRSANDVSTAFGE-FISGSE-----KKFAILMSNKAKKIGMQNTIYKNASG 181
            +Q +  ++  S  D + A  + F SGS      K F   M+ KA  +GM  T Y +  G
Sbjct: 129 VKQLLYGMLLPSGCDAAMALADTFGSGSTTAKRTKSFISKMNKKADALGMTKTQYDSFDG 188

Query: 182 L--HDKNQITTARD------QAILGILLR---KNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           +  H  N  TTARD       A+    LR   K+     K  +    R R     + NKL
Sbjct: 189 ISTHGAN-YTTARDLSKLARHALGNATLRTVVKSVGTEQKAPAANG-RTRTYYWNSSNKL 246

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           L   +   GIKTG    +G  IV + +     +V V++G
Sbjct: 247 LGSYNGAIGIKTGTGTAAGKCIVFAAKRNGRTVVGVLLG 285


>gi|283832440|ref|ZP_06352181.1| penicillin-binding protein 7 [Citrobacter youngae ATCC 29220]
 gi|291072100|gb|EFE10209.1| penicillin-binding protein 7 [Citrobacter youngae ATCC 29220]
          Length = 315

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 103/233 (44%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS+TK+MT  ++ +     +L LN ++   K   +Q
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD----ARLPLNEKL---KVDISQ 94

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G    F   M+ KAK 
Sbjct: 95  TPEMKGIYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYNAFIKAMNAKAKA 153

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM  T +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 154 LGMTQTRFVEPTGLSIHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFANPAYTL 211

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 212 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 258


>gi|289824265|ref|ZP_06543860.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 462

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS+TK+MT  ++ +     +L L+    + K   +Q
Sbjct: 29  SAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD----ARLPLDE---ILKVDISQ 81

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +   +  G    F   M+ KAK 
Sbjct: 82  TPEMKGVYSRVRLNSEISRKNMLLLALMS-SENRAAASLAHYYPGGYNAFIKAMNAKAKA 140

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM +T +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 141 LGMTHTRFVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTREDMATFSHPAYTL 198

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 199 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 245


>gi|307326560|ref|ZP_07605754.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           violaceusniger Tu 4113]
 gi|306887754|gb|EFN18746.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           violaceusniger Tu 4113]
          Length = 313

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 106/249 (42%), Gaps = 26/249 (10%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLN 101
           S  +E+ AK  Y   ++D N N+    K  + + P AS TK+MT  ++   L ++ L L 
Sbjct: 39  SGPTEVSAKGAY---LLDNNTNKELWAKAADTKRPMASTTKLMTAVVV---LDTRGLELG 92

Query: 102 TQIPVSKT----AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE-FISGSE- 155
            ++ V ++     A    SK  L++    T +Q +  L+  S  D + A  + F +G   
Sbjct: 93  KKVTVKQSYIDYTARVGGSKADLQKGDKLTVKQLLYGLLLPSGCDAAMALADTFGTGDTT 152

Query: 156 ----KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ-ITTARDQAILG--ILLRKNFPQY 208
               K F   M+ KA  +GM  + Y    G+ +  Q  TT RD A L    L        
Sbjct: 153 AKRTKSFIAQMNKKASALGMTKSHYDTFDGISEGGQNYTTPRDMAKLARHALGNSTLGTV 212

Query: 209 YKYF-SIRKF-----RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
            K   +I+K      R R     N N+LL       GIKTG     G  +V + +     
Sbjct: 213 VKSVDTIQKAPAANGRTRTYYWNNTNRLLGSYSGAIGIKTGTGTAPGRCLVFAAKRDGRT 272

Query: 263 IVAVVMGMP 271
           +V V++  P
Sbjct: 273 VVGVILNAP 281


>gi|45934805|gb|AAS79469.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           bikiniensis]
          Length = 231

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 8/175 (4%)

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTEQGILALITRS 139
           MT Y+I E    +       I V +TAA +      S + ++     +  + +  L+  S
Sbjct: 1   MTAYVILEEHPLRPDEDGPLIEVDRTAAHEAGVGGESTVPVRSGERHSQRRLLELLLIPS 60

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            N+V+     + SGS+  F   M   A ++GM++T+Y  ASG+ +    +TA DQ  L  
Sbjct: 61  GNNVARLLARWDSGSQAAFVTKMRRAAVRLGMKDTVYTGASGI-EPTTTSTAADQVRLTR 119

Query: 200 LLRKNFPQYYKYFSIRKFRYRN-RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
              ++ P +    + R+        ITN N LL+    + G+KTG +  +G N++
Sbjct: 120 AAMED-PVFRAVVATRETTVPGLGTITNTNPLLDT-PGVLGVKTGSSTPAGGNLL 172


>gi|91788192|ref|YP_549144.1| murein-DD-endopeptidase [Polaromonas sp. JS666]
 gi|91697417|gb|ABE44246.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Polaromonas sp. JS666]
          Length = 353

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 95/209 (45%), Gaps = 21/209 (10%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQ 113
           ++VID +  ++   K D    P ASLTK+MT  II       KL ++  I V++    T+
Sbjct: 100 ALVIDQDTREVLFSKNDHAVLPIASLTKLMTGVII----SGAKLPMDEMITVTQDDVDTE 155

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   L+  T  T  + +   +  S N  + A G    G    F  LM+ KAK +GM +
Sbjct: 156 KGSSSRLRVGTTLTRGELLHLALMSSENRAAHALGRTYPGGMPTFVNLMNAKAKMLGMND 215

Query: 174 TIYKNASGLHDKNQITTARDQAIL------GILLRK--NFPQYYKYFSIRKFRYRNRIIT 225
           T Y   +GL  +NQ ++A+D A L        +LR+      Y      R  +Y      
Sbjct: 216 TSYVEPTGLSSRNQ-SSAQDLATLVNAAHGDPVLRELSTSTGYQVAVGKRTLQY-----N 269

Query: 226 NHNKLL-NKMHNIDGIKTGYTRNSGFNIV 253
           N N+L+ N   +I   KTGY   +G  +V
Sbjct: 270 NTNRLVKNPDWDIGLQKTGYISEAGQCLV 298


>gi|311739947|ref|ZP_07713781.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305020|gb|EFQ81089.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 401

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 93/210 (44%), Gaps = 20/210 (9%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++  ++   K    RY PAS+ K +   ++ +     +L L+ ++ V + +A  + 
Sbjct: 96  MVSDIDSGEIIAMKDPNGRYRPASIIKALLALVVID-----ELDLHQKVEVGEESAQIDG 150

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S + +     +T EQ +  L+  S ND + A  + + G E      +++KA +IG  +T 
Sbjct: 151 SAVGIGPGGTYTVEQLLQGLLMASGNDAAHALAQELGGDEATLR-KVNDKAAEIGTNSTY 209

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYRNRI------ITNH 227
             + SGL      T+A D   +  + R  F  P + +        +          + N 
Sbjct: 210 AASYSGLDAPGMSTSAED---ISRIYRAAFHNPTFARIVDTESVDFPGWGDLDGYQLGND 266

Query: 228 NKL-LNKMHNIDGIKTGYTRNSGFNIVTSL 256
           N L LN    I G KTG+T ++    V +L
Sbjct: 267 NGLFLNDPDGIGG-KTGFTDDAHHTFVGAL 295


>gi|254251960|ref|ZP_04945278.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia dolosa AUO158]
 gi|124894569|gb|EAY68449.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia dolosa AUO158]
          Length = 384

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 105/247 (42%), Gaps = 32/247 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N  +    K      P AS++K+MT  ++ +   
Sbjct: 113 VGQAFGLHDTPDALALRSSVAYVVDQNTGEPLFDKNSHAVVPIASISKLMTAMVVLD--- 169

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             KL +  Q+ V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 170 -SKLPMTDQLEVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPG 228

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM +T ++N++GL   N +++ARD       L K     Y+Y  
Sbjct: 229 GRPAFIAAMNAKAKALGMADTHFENSTGLSSSN-VSSARD-------LVKLVNAAYQYPL 280

Query: 214 IRKFRY----------RNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           IRKF            RN +  + N L+  N   +I   KTG+   +G  +V        
Sbjct: 281 IRKFSTDRTYEVYTGKRNLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGR 340

Query: 262 PIVAVVM 268
           P+V V++
Sbjct: 341 PVVMVLL 347


>gi|167837175|ref|ZP_02464058.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis MSMB43]
          Length = 362

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 103/246 (41%), Gaps = 31/246 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N ++    K      P AS+TK+MT  ++ +   
Sbjct: 92  VGQAFGLHETPDSLALRSSVAYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVLD--- 148

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  L  QI V+      +  +   L   +  + E  +   +  S N  + A   + +G
Sbjct: 149 -SKAPLTDQIDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYTG 207

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM +T ++N++GL  +N +++ARD       L K     Y+Y  
Sbjct: 208 GRPAFIAAMNAKAKSLGMSDTHFENSTGLSSQN-VSSARD-------LVKMVNAAYQYPL 259

Query: 214 IRKFRYRNRIITNHNKLL-----------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           IRKF        N  K +           N   +I   KTG+   +G  +V        P
Sbjct: 260 IRKFSTDRSYEVNTGKRMLAYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHSRP 319

Query: 263 IVAVVM 268
           IV V++
Sbjct: 320 IVMVLL 325


>gi|228958790|ref|ZP_04120501.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800887|gb|EEM47793.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 166

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 1/122 (0%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+I+ N  ++   K +E P   A+L+K+MT YI+ E L  KK+ L+  + +S      
Sbjct: 37  SAILINANSGEIVYKKNEETPVQSAALSKLMTEYIVLEQLNDKKIQLDDFVQISNEVFRV 96

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S + +      T    + AL+    N  + A  E I+G+E  F +LM+ K K+  +  
Sbjct: 97  ETSPIQVTSNDKTTIRDLLHALLLAGNNRSALALAEHIAGNEDNFTVLMNKKDKRTKVIT 156

Query: 174 TI 175
           TI
Sbjct: 157 TI 158


>gi|283785939|ref|YP_003365804.1| penicillin-binding protein 7 [Citrobacter rodentium ICC168]
 gi|282949393|emb|CBG89005.1| penicillin-binding protein 7 [Citrobacter rodentium ICC168]
          Length = 308

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS+TK+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 42  SAMIVDLNTNKVIYANHPDLVRPIASITKLMTAMVVLD----ARLPLDEKL---KVDISQ 94

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G    F   M+ KAK 
Sbjct: 95  TPEMKGIYSRVRLNSEISRKNMLLLALMS-SENRAAASLAHHYPGGYNAFIKAMNAKAKA 153

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM +T +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 154 LGMSHTRFVEPTGLSIHN-VSTARDLTRL-LIASKQYPLIGQLSTTREDMATFSNPAYTL 211

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 212 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTLINNKPVALVVM 258


>gi|302523506|ref|ZP_07275848.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB78]
 gi|302432401|gb|EFL04217.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB78]
          Length = 315

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 14/226 (6%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTY 125
             G K DE    AS TK+MT  ++ ++ +  +  +  +            S   L+    
Sbjct: 79  WAGAKADESVPMASTTKIMTAIVVLKHPEWLERQITVKQEYRDYVQEVGASTADLQTGDT 138

Query: 126 FTTEQGILALITRSANDVSTAFGE-FISGSEKK-----FAILMSNKAKKIGMQNTIYKNA 179
            T  Q + A++  S  D + A  + F +G  ++     F   M+ +A+++G++ T + + 
Sbjct: 139 LTARQLLHAMLIPSGADAARALADTFGNGDTEEARISDFIAQMNAEAQQLGLKGTHFDSV 198

Query: 180 SGLHDKNQITTARDQAILG--ILLRKNFP------QYYKYFSIRKFRYRNRIITNHNKLL 231
            G+   N  +TARD A LG   +L+  F       QY           R     N N+LL
Sbjct: 199 DGISQGNNHSTARDLAKLGQRAMLQPVFAEVVKNTQYKTEAPAANGHTRYYTWNNTNELL 258

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
                  G+KTG     G+ +V +    +  +V V++G  T +  D
Sbjct: 259 GTYDGALGVKTGSGPEDGYCVVFAAERDNRTLVGVILGDDTGRFDD 304


>gi|56477732|ref|YP_159321.1| D-alanyl-D-alanine carboxypeptidase [Aromatoleum aromaticum EbN1]
 gi|56313775|emb|CAI08420.1| probable D-alanyl-D-alanine carboxypeptidase [Aromatoleum
           aromaticum EbN1]
          Length = 263

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 41/228 (17%)

Query: 64  NQMTGF----KQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT---AATQNP 115
           NQ TG     K+ +   P AS+TK+MT  ++ +  QS    L+ +I +++          
Sbjct: 18  NQATGEVILEKKSDSVLPIASITKLMTAMVVLDGGQS----LSEEIVITEDDLDTIKGTG 73

Query: 116 SKLYLKEKTYFTTEQGI-LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           S+L L   T  T EQ + LAL++ S N  ++A G    G    F   M+ KA+ +G+ +T
Sbjct: 74  SRLALG--TRLTREQLLHLALMS-SENRAASALGRSYPGGIAAFVKAMNVKARLVGLGDT 130

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            + +++GL D   +++ RD       L +       Y  IR+F   +    +H ++  +M
Sbjct: 131 RFSDSTGL-DPTNVSSPRD-------LVRMVSAASTYPLIRRFSTSSE---DHVEIRGRM 179

Query: 235 H--------------NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           H               ID  KTGY R +G  +V   R  +  ++ V+M
Sbjct: 180 HRFGNTNSLVRSPEWEIDVSKTGYIREAGRCLVMQARLLNQRVIIVLM 227


>gi|318059553|ref|ZP_07978276.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SA3_actG]
 gi|318080461|ref|ZP_07987793.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SA3_actF]
          Length = 315

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 14/226 (6%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTY 125
             G K DE    AS TK+MT  ++ ++ +  +  +  +            S   L+    
Sbjct: 79  WAGAKADESVPMASTTKIMTAIVVLKHPEWLERQITVKQEYRDYVQEVGASTADLQTGDT 138

Query: 126 FTTEQGILALITRSANDVSTAFGE-FISGSEKK-----FAILMSNKAKKIGMQNTIYKNA 179
            T  Q + A++  S  D + A  + F +G  ++     F   M+ +A+++G++ T + + 
Sbjct: 139 LTARQLLHAMLIPSGADAARALADTFGNGDTEEARISDFIAQMNAEAQQLGLKGTHFDSV 198

Query: 180 SGLHDKNQITTARDQAILG--ILLRKNFP------QYYKYFSIRKFRYRNRIITNHNKLL 231
            G+   N  +TARD A LG   +L+  F       QY           R     N N+LL
Sbjct: 199 DGISQGNNHSTARDLAKLGQRAMLQPVFAEVVKNTQYKTEAPAANGHTRYYTWNNTNELL 258

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
                  G+KTG     G+ +V +    +  +V V++G  T +  D
Sbjct: 259 GTYDGALGVKTGSGPEDGYCVVFAAERDNRTLVGVILGDDTGRFDD 304


>gi|257440394|ref|ZP_05616149.1| putative D-alanyl-D-alanine carboxypeptidase [Faecalibacterium
           prausnitzii A2-165]
 gi|257197143|gb|EEU95427.1| putative D-alanyl-D-alanine carboxypeptidase [Faecalibacterium
           prausnitzii A2-165]
          Length = 439

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 7/129 (5%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEKTYFT 127
           +E  +PAS+TK+MTL +  E  Q K    N ++ VS     + A  + S + L+E     
Sbjct: 53  NEELHPASITKVMTLGLACEKAQGK--WDNVKLTVSHEDVYSLAGTDSSHIALQEGEEVP 110

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAI-LMSNKAKKIGMQNTIYKNASGLHDKN 186
               + A +  SAND +    E+  G   +  +  M+ +AK++G+++T + N  G+ D++
Sbjct: 111 LTDALYATMMASANDGANLLAEYFGGGSIEGGVAAMNAQAKELGLEHTHFANPHGISDED 170

Query: 187 QITTARDQA 195
             T+  D A
Sbjct: 171 HYTSCYDMA 179


>gi|295835113|ref|ZP_06822046.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. SPB74]
 gi|295825314|gb|EFG64181.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. SPB74]
          Length = 322

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 92/218 (42%), Gaps = 14/218 (6%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTY 125
             G   DE    AS TK+MT  ++ ++ +  +  +  +            S   L+    
Sbjct: 86  WAGADADESVPVASTTKIMTAVVVLKHPEWLERRITVKQEYRDYVQEVGASTADLQTGDT 145

Query: 126 FTTEQGILALITRSANDVSTAFGE-FISGSEKK-----FAILMSNKAKKIGMQNTIYKNA 179
            T  Q + A++  S  D + A  + F +G  ++     F   M+ +A+++G++ T + + 
Sbjct: 146 LTARQLLHAMLIPSGADAARALADNFGNGDTEEARIADFIAQMNAEAQQLGLKGTHFDSV 205

Query: 180 SGLHDKNQITTARDQAILG--ILLRKNFP------QYYKYFSIRKFRYRNRIITNHNKLL 231
            G+   N  +TARD A LG   +L+  F       QY         R R     N N+LL
Sbjct: 206 DGISQGNNHSTARDLAKLGQRAMLQPVFAEVVKNTQYKTEAPAANGRTRYYTWNNTNELL 265

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
                  G+KTG     G+ +V +    +  ++ VV+G
Sbjct: 266 GTYDGALGVKTGSGPEDGYCVVFAAERDNRTLIGVVLG 303


>gi|182437259|ref|YP_001824978.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178465775|dbj|BAG20295.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 323

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 99/220 (45%), Gaps = 15/220 (6%)

Query: 44  MASELH-AKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLN 101
           +A  LH   P+     + V      G + ++   P AS+TK+MT Y+I +    +     
Sbjct: 35  LARSLHLPWPREGQASVTVEGIGSLGTRGEQKPVPIASVTKVMTAYVILKGHPMRADSHG 94

Query: 102 TQIPVSKTAATQNPSKL-----YLKEKTYFTTEQGILALI-TRSANDVSTAFGEFISGSE 155
             +   + AA ++ S +      L  K Y  T++ +L L+   S N+V+     + +G E
Sbjct: 95  ATVVADRRAADESYSSVETTAPVLAGKEY--TQRRLLELMMVPSGNNVARLLARWDAGDE 152

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           + F   M+  A  +GM+ T Y   SG+    + +TA DQ  L     K+ P + +  +  
Sbjct: 153 EAFVAKMNRAAAGLGMRATTYTGVSGMETSTR-STADDQLRLARAAMKD-PVFRQVVATA 210

Query: 216 KFRYRNRIIT--NHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
                    T  N NKLL +   + G+KTG +  +G N+V
Sbjct: 211 SVTAPGAGATFRNTNKLLGR-DGVIGLKTGSSTPAGGNLV 249


>gi|302557055|ref|ZP_07309397.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus
           Tu4000]
 gi|302474673|gb|EFL37766.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus
           Tu4000]
          Length = 381

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 12/129 (9%)

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           +SG  +  A  M  +A+ +G ++T  K+  G     Q+++A D A+ G    +N  ++ +
Sbjct: 164 LSGGWRATAERMQAEARALGARDTRVKSPDGYDTPGQVSSAFDLAVFGRAGLRNA-EFAR 222

Query: 211 YFSIRKFRYRNR-----IITNHNKLLNKMHNID------GIKTGYTRNSGFNIVTSLRYK 259
           Y +  + R+  R      I N N+LL     ++      GIK GYT N+G  +V + R  
Sbjct: 223 YCARHEARFPARDGGSFGIVNTNRLLTGADGVEAYDGLVGIKNGYTSNAGNTLVAAARRD 282

Query: 260 DDPIVAVVM 268
              +V  VM
Sbjct: 283 GHTLVVTVM 291


>gi|302205612|gb|ADL09954.1| putative peptidoglycan synthesis related protein [Corynebacterium
           pseudotuberculosis C231]
          Length = 404

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 17/239 (7%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++   +   K    RY PAS+ K +   +  +     +L+L  ++ ++   A Q  
Sbjct: 97  MVFDLDNGDVIATKDPHGRYRPASVIKALLALVALD-----ELNLKAKVKITAEDANQEG 151

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S +   +   +T EQ +  L+  S ND + A  + + G  K    + +  A  +G  +T 
Sbjct: 152 SAVGYVDGVEYTNEQLLYGLLLNSGNDAAHALAQRLGGDNKTLEKVNA-LAHSLGTVDTY 210

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT------NHNK 229
             + SGL      T+A D A++     +N P + K  +           T      N N 
Sbjct: 211 AASYSGLDAPGMSTSAHDLALIYSHAWEN-PTFAKMVATEHIELPGNAATPTFQVWNDNG 269

Query: 230 L-LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD-QKALELITS 286
           L LN  H I G KTGYT ++    V +       + AV++     Q R  Q+A +LI +
Sbjct: 270 LFLNDEHGIGG-KTGYTDDAHHTFVGAKNIDGRRLAAVILDTTVEQGRPWQQAQKLIDA 327


>gi|297155472|gb|ADI05184.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces bingchenggensis
           BCW-1]
          Length = 302

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 116/272 (42%), Gaps = 28/272 (10%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           S + AK  Y   ++D + N+    K  + + P AS TK+MT  ++   L S+ L+L+ ++
Sbjct: 31  SGISAKGAY---LLDNSANKQLWAKAADTKRPMASTTKLMTAVVV---LDSRGLNLSKKV 84

Query: 105 PVSKT----AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE-FISGSE---- 155
            V ++     A    SK  LK+    T +Q +  L+  S  D + A  + F +G      
Sbjct: 85  TVKQSYIDYVARVGGSKADLKKGDKLTVKQLLYGLMLPSGCDAAMALADTFGTGDTTAKR 144

Query: 156 -KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ-ITTARDQAILG--ILLRKNFPQYYKY 211
            K F   M+ KA  +GM  T Y    G+    Q  TT RD A L    L         K 
Sbjct: 145 TKSFISQMNKKASALGMTKTHYDTFDGISYGGQNYTTPRDMAKLARHALGNSTLSTVVKS 204

Query: 212 F-SIRKF-----RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
             +++K      R R     N N+LL       GIKTG     G  +V + +     +V 
Sbjct: 205 VDTVQKAPAANGRTRTYSWNNTNRLLGSYSGAIGIKTGTGTAPGRCLVFAAKRNGRTVVG 264

Query: 266 VVMGMPTSQERDQKALELITSFLEKKTLKHQQ 297
           V++  P      +K L+   +F    T+K +Q
Sbjct: 265 VILNAPKRYPDAKKMLDW--AFNSTTTVKWRQ 294


>gi|118387709|ref|XP_001026957.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila]
 gi|89308727|gb|EAS06715.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila SB210]
          Length = 805

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 96/219 (43%), Gaps = 35/219 (15%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLN-TQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           R  ASLTK+MT Y+ ++  +S +L +    + V++       +   L + T+ +      
Sbjct: 539 REVASLTKLMTFYVAYKLFESLQLDIKLILLQVTECCTQIEGTSGKLVKDTWLSVLDLFH 598

Query: 134 ALITRSAND----VSTAFGEFISGSEKK-------------------------FAILMSN 164
            L+  S ND    ++   G  +   + K                         F + M+ 
Sbjct: 599 GLLLPSGNDCAELIAIKIGAMLDMDQNKQLNPQMDMYQLNSELDKRASQAKMIFIVKMNE 658

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS---IRKFRYRN 221
             K IGM +T + N +GL D N ++TA D   + I + +   +  ++ +     +    +
Sbjct: 659 FCKDIGMHSTFFSNVTGLPDSNNVSTAYDIECMQIPVFRQIVRKQEHIADVYDNQSEKSD 718

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           +I  N NKLLN  +   GIKTG T+++G  + + ++ KD
Sbjct: 719 KIWFNTNKLLN--NGFCGIKTGITQSAGPCLASFIKIKD 755


>gi|320086606|emb|CBY96377.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 315

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS+TK+MT  ++ +     +L L+    + K   +Q
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD----ARLPLDE---ILKVDISQ 94

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +   +  G    F   M+ KAK 
Sbjct: 95  TPEMKGVYSRVRLNSEISRKNMLLLALMS-SENRAAASLAHYYPGGYNAFIKAMNAKAKA 153

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM +T +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 154 LGMTHTRFVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTREDMATFSHPAYTL 211

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 212 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTMINNKPVALVVM 258


>gi|62180754|ref|YP_217171.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62128387|gb|AAX66090.1| D-alanyl-D-alanine endopeptidase; penicillin-binding protein 7 and
           penicillin-binding protein 8 [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322715229|gb|EFZ06800.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 315

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 31/231 (13%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS+TK+MT  ++ +     +L L+    + K   +Q
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD----ARLPLDE---ILKVDISQ 94

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +   +  G    F   M+ KAK 
Sbjct: 95  TPEMKGVYSRVRLNSEISRKNMLLLALMS-SENRAAASLAHYYPGGYNAFIKAMNAKAKA 153

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-----------F 217
           +GM +T +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 154 LGMTHTRFVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTREDMATFSHPAYTL 211

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            +RN   TNH  L     NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 212 PFRN---TNH-LLYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 258


>gi|184156063|ref|YP_001844403.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus fermentum IFO
           3956]
 gi|183227407|dbj|BAG27923.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus fermentum IFO
           3956]
          Length = 417

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 111/255 (43%), Gaps = 46/255 (18%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-T 112
           ++I ID    Q+   K    RYP AS+ K++TL +I + ++  KL  + +I +SK  A  
Sbjct: 40  AAITIDAETGQVLYEKNATKRYPIASVIKILTLAVIEQDIEQGKLKWDQKIKISKEVAKV 99

Query: 113 QNP---SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            N    S + L E   +T +  + +++  SA+  + A     +GS   F   M   AK+ 
Sbjct: 100 ANDWRFSNVQLNEGESYTVKSLVESMMIVSADGSAEALALASAGSTAAFNQKMQAVAKEA 159

Query: 170 GMQNTIYKNASGLHD---------------KNQITTARDQAILGILLRKNFP-------- 206
           G+ +    N  GL +               +NQ++ A+D A +   L + +P        
Sbjct: 160 GVTDAKIYNMIGLANGDLGEMRLKNVSKKAENQLS-AKDVAKIARYLVEKYPSVLEITKQ 218

Query: 207 ----------QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
                     Q Y+  +I     +N   + H +       +DG+KTG T +SG+  V + 
Sbjct: 219 KFVNFQVSDSQQYEMVNINSMLPQNAAASTHGE-------VDGLKTGMTDSSGYCFVGTG 271

Query: 257 RYKDDPIVAVVMGMP 271
            +    ++ VV+ +P
Sbjct: 272 TFNGRRLITVVLKVP 286


>gi|205359523|ref|ZP_02830125.2| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205345065|gb|EDZ31829.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
          Length = 302

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS+TK+MT  ++ +     +L L+    + K   +Q
Sbjct: 29  SAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD----ARLPLDE---ILKVDISQ 81

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +   +  G    F   M+ KAK 
Sbjct: 82  TPEMKGVYSRVRLNSEISRKNMLLLALMS-SENRAAASLAHYYPGGYNAFIKAMNAKAKA 140

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM +T +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 141 LGMTHTRFVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTREDMATFSHPAYTL 198

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 199 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTMINNKPVALVVM 245


>gi|299783572|gb|ADJ41570.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus fermentum CECT
           5716]
          Length = 421

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 111/255 (43%), Gaps = 46/255 (18%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-T 112
           ++I ID    Q+   K    RYP AS+ K++TL +I + ++  KL  + +I +SK  A  
Sbjct: 44  AAITIDAETGQVLYEKNATKRYPIASVIKILTLAVIEQDIEQGKLKWDQKIKISKEVAKV 103

Query: 113 QNP---SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            N    S + L E   +T +  + +++  SA+  + A     +GS   F   M   AK+ 
Sbjct: 104 ANDWRFSNVQLNEGESYTVKSLVESMMIVSADGSAEALALASAGSTAAFNQKMQAVAKEA 163

Query: 170 GMQNTIYKNASGLHD---------------KNQITTARDQAILGILLRKNFP-------- 206
           G+ +    N  GL +               +NQ++ A+D A +   L + +P        
Sbjct: 164 GVTDAKIYNMIGLANGDLGEMRLKNVSKKAENQLS-AKDVAKIARYLVEKYPSVLEITKQ 222

Query: 207 ----------QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
                     Q Y+  +I     +N   + H +       +DG+KTG T +SG+  V + 
Sbjct: 223 KFVNFQVSDSQQYEMVNINSMLPQNAAASTHGE-------VDGLKTGMTDSSGYCFVGTG 275

Query: 257 RYKDDPIVAVVMGMP 271
            +    ++ VV+ +P
Sbjct: 276 TFNGRRLITVVLKVP 290


>gi|171463757|ref|YP_001797870.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171193295|gb|ACB44256.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 338

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 107/247 (43%), Gaps = 35/247 (14%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP---ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           SS+ + VN++    + +  P      AS+TK+MT  ++ +     KL L+  I ++    
Sbjct: 91  SSVAMVVNQDTKEVYFEKNPSVSLPIASITKLMTAMVVLD----SKLPLDEAIVIN---- 142

Query: 112 TQNPSKLY----LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
             +   +Y    L   T  T E+ +L  +  S N  +   G    G    F   M+ KAK
Sbjct: 143 -ADDIHIYRTSRLAGGTVLTREEALLLALMSSENRAAYTLGRNYPGGIPAFVDAMNRKAK 201

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-------- 219
           ++GM ++ + + +GL  +N + TA D       L +     Y+Y  IR+F          
Sbjct: 202 ELGMNHSHFADPTGLMSEN-VATAED-------LTRMLNAAYQYKMIREFSTWPDLTMVI 253

Query: 220 --RNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
             R +   N N+L+     NI   KTG+   +G  +V   R  + P++ V +    +Q R
Sbjct: 254 AKRPQKFLNTNRLVRSGDMNIGLQKTGFINAAGKCLVMQARVNNTPLLLVFLDSVGTQSR 313

Query: 277 DQKALEL 283
              A+ +
Sbjct: 314 FADAVRV 320


>gi|323213518|gb|EFZ98309.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
          Length = 278

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS+TK+MT  ++ +     +L L+    + K   +Q
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD----ARLPLDE---ILKVDISQ 94

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +   +  G    F   M+ KAK 
Sbjct: 95  TPEMKGVYSRVRLNSEISRKNMLLLALMS-SENRAAASLAHYYPGGYNAFIKAMNAKAKA 153

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM +T +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 154 LGMTHTRFVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTREDMATFSHPAYTL 211

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 212 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 258


>gi|300782776|ref|YP_003763067.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei
           U32]
 gi|299792290|gb|ADJ42665.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei
           U32]
          Length = 414

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 14/201 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S +V D++   +   K    R  PASL K +   ++   L  ++      I  +K  A Q
Sbjct: 98  SWLVQDLDTGAVVAAKDPHARQRPASLIKTLLALVVVTQLDPQQ-----TIVATKEDAEQ 152

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             + + L     +T +Q +  L+  S NDV+  F   + G +   A  M+  A KIG  +
Sbjct: 153 ECTCVGLVAGGQYTVDQLLHGLLMHSGNDVAHVFATALGGPDSAVA-KMNALAAKIGALD 211

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR------IITNH 227
           T     SGL      T+A D +++     K  P++ K  + + F +          I N 
Sbjct: 212 TRAATPSGLDGPGMSTSAYDLSLIFNYAMKQ-PEFAKVVATKNFEFPPAGGKPAIPIFND 270

Query: 228 NKLLNKMHNIDGIKTGYTRNS 248
           NKLL       G KTG+T ++
Sbjct: 271 NKLLGVYPGFLGGKTGFTDDA 291


>gi|326777880|ref|ZP_08237145.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           cf. griseus XylebKG-1]
 gi|326658213|gb|EGE43059.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           cf. griseus XylebKG-1]
          Length = 368

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 17/221 (7%)

Query: 44  MASELH-AKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIF-EYLQSKKLHL 100
           +A  LH   P+     + V      G + ++   P AS+TK+MT Y+I  ++      H 
Sbjct: 80  LARSLHLPWPREGQASVTVEGIGSLGTRGEQKPVPIASVTKVMTAYVILKDHPMRADSHG 139

Query: 101 NTQIPVSKTAATQNPSKL-----YLKEKTYFTTEQGILALI-TRSANDVSTAFGEFISGS 154
            T +   + AA ++ S +      L  K Y  T++ +L L+   S N+V+     + +G 
Sbjct: 140 ATVV-ADRRAADESYSSVETTAPVLAGKEY--TQRRLLELMMVPSGNNVARLLARWDAGD 196

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           E+ F   M+  A  +GM+ T Y   SG+    + +TA DQ  L     K+ P + +  + 
Sbjct: 197 EEAFVAKMNRAAAGLGMRATTYTGVSGMEASTR-STADDQLRLARAAMKD-PVFRQVVAT 254

Query: 215 RKFRYRNRIIT--NHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
                     T  N NKLL +   + G+KTG +  +G N+V
Sbjct: 255 ASVTAPGAGATFRNTNKLLGR-DGVIGLKTGSSTPAGGNLV 294


>gi|160900293|ref|YP_001565875.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Delftia
           acidovorans SPH-1]
 gi|160365877|gb|ABX37490.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Delftia
           acidovorans SPH-1]
          Length = 365

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 96/209 (45%), Gaps = 21/209 (10%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQ 113
           ++V+D + +++   K D    P ASLTK+MT  +I +      L ++  I +++    T+
Sbjct: 116 ALVLDQDTHEVLLSKNDHAVLPIASLTKLMTGLLISQ----AHLPMDEAITITQDDVDTE 171

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   L   T  T  + +   +  S N  + A G    G    F   M+ KA+ +GM +
Sbjct: 172 KGSSSRLAVGTTLTRGEMLHLALMSSENRAAHALGRTFPGGLDAFVQQMNAKARLLGMTD 231

Query: 174 TIYKNASGLHDKNQITTARDQAIL------GILLRK--NFPQYYKYFSIRKFRYRNRIIT 225
           T Y   +GL  +NQ ++ARD A+L        L+R+    P Y      R  +Y      
Sbjct: 232 TRYVEPTGLSSRNQ-SSARDLAVLVNVAHSDPLVREYTTSPGYEVAVGRRTLQY-----N 285

Query: 226 NHNKL-LNKMHNIDGIKTGYTRNSGFNIV 253
           N N+L ++   +I   KTGY   +G  +V
Sbjct: 286 NTNRLVMSPTWDIGLQKTGYISEAGRCLV 314


>gi|260587695|ref|ZP_05853608.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
           20583]
 gi|260541960|gb|EEX22529.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
           20583]
          Length = 334

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 11/160 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           P  +T++MT  +  E L    L     I        +      L+E  + T +Q + A++
Sbjct: 111 PGKVTQLMTALLAVERLN---LEDEAVIEGDDRVYGKEARGCGLQEGYHVTVKQLLNAVL 167

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             SA D   A      GS++ F  LM+ +A ++GM NT Y N++G     Q TT  D  +
Sbjct: 168 VSSAEDACQALARLTGGSQEAFVTLMNERATELGMTNTHYANSTGYTSDEQYTTVYDIYL 227

Query: 197 L--------GILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           L         +L   + P Y   ++  K   + R + + N
Sbjct: 228 LLNEFLKYPDLLNAMSLPDYTINYTTPKDELKQRWLDSDN 267


>gi|331084015|ref|ZP_08333122.1| hypothetical protein HMPREF0992_02046 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330402377|gb|EGG81947.1| hypothetical protein HMPREF0992_02046 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 316

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 11/160 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           P  +T++MT  +  E L    L     I        +      L+E  + T +Q + A++
Sbjct: 93  PGKVTQLMTALLAVERL---NLEDEAVIEGDDRVYGKEARGCGLQEGYHVTVKQLLNAVL 149

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             SA D   A      GS++ F  LM+ +A ++GM NT Y N++G     Q TT  D  +
Sbjct: 150 VSSAEDACQALARLTGGSQEAFVTLMNERATELGMTNTHYANSTGYTSDEQYTTVYDIYL 209

Query: 197 L--------GILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           L         +L   + P Y   ++  K   + R + + N
Sbjct: 210 LLNEFLKYPDLLNAMSLPDYTINYTTPKDELKQRWLDSDN 249


>gi|302524153|ref|ZP_07276495.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. AA4]
 gi|302433048|gb|EFL04864.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. AA4]
          Length = 409

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 15/221 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S ++ D++   +   K    R  PASL K +   ++   L+ +++ + T     K  A Q
Sbjct: 98  SWVLQDLDTGAVVAAKDPHARERPASLIKTLLALVVVTELKPEQVIVPT-----KEDAEQ 152

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             + + +    ++T +Q +  L+  S NDV+ AF   + G +    + M+  A +IG  +
Sbjct: 153 ECTCVGITAGGHYTVDQLLHGLLMHSGNDVAHAFATALGGVDAAV-VKMNALAARIGATD 211

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY-----FSIRKFRYRNRI-ITNH 227
           T     SGL      T+A D +++     K  P++ K      F+I     +  I + N 
Sbjct: 212 TRAATPSGLDGPGMSTSAYDLSLVFHYAMKQ-PEFAKVVATKNFTIPAVDGKPPIPVFND 270

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           NKLL       G KTG+T ++    V     +D   +A+VM
Sbjct: 271 NKLLGVYPGFLGGKTGFTDDARHTYVGGAE-RDGHRLAIVM 310


>gi|289809759|ref|ZP_06540388.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 278

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS+TK+MT  ++ +     +L L+    + K   +Q
Sbjct: 29  SAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD----ARLPLDE---ILKVDISQ 81

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +   +  G    F   M+ KAK 
Sbjct: 82  TPEMKGVYSRVRLNSEISRKNMLLLALMS-SENRAAASLAHYYPGGYNAFIKAMNAKAKA 140

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM +T +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 141 LGMTHTRFVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTREDMATFSHPAYTL 198

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 199 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 245


>gi|157144931|ref|YP_001452250.1| D-alanyl-D-alanine endopeptidase [Citrobacter koseri ATCC BAA-895]
 gi|157082136|gb|ABV11814.1| hypothetical protein CKO_00660 [Citrobacter koseri ATCC BAA-895]
          Length = 311

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS+TK+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD----ARLPLDEKL---KVDISQ 94

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G    F   M+ KAK 
Sbjct: 95  TPEMKGVYSRVRLNSEISRKNMLLLALMS-SENRAAASLAHHYPGGYNAFIKAMNAKAKA 153

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM +T +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 154 LGMTHTRFVEPTGLSIHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFANPAYTL 211

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 212 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTMINNKPVALVVM 258


>gi|307324182|ref|ZP_07603390.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           violaceusniger Tu 4113]
 gi|306889913|gb|EFN20891.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           violaceusniger Tu 4113]
          Length = 886

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 23/206 (11%)

Query: 78  ASLTKMMTLYIIFEY------LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           AS+TK+MT Y++ +        +  K+ ++ Q   ++ A + + S+  +KE   FT  Q 
Sbjct: 562 ASVTKVMTAYVVLKDHPLKGDAEGPKITIDAQ--AAEEAKSADESRAAVKEGQTFTQHQL 619

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  L+  S+N+++     + +GS   F   M++ A+ +GM+ T Y + SGL +  + +TA
Sbjct: 620 LQLLLINSSNNIARLLARWDAGSLDAFVKKMNDAAEGLGMKQTTYTDPSGLKESTK-STA 678

Query: 192 RDQAILGILLRKNFPQYYKYFSI-----RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
            DQ    + L K   Q   + ++      +       I N+N LL K   I GIKTG + 
Sbjct: 679 ADQ----LKLAKAAMQSEAFRAVVATPNAEIPGLGDRIYNNNNLLVKPGVI-GIKTGSST 733

Query: 247 NSG----FNIVTSLRYKDDPIVAVVM 268
            +G    +  V ++  K   I+ VV+
Sbjct: 734 PAGGALMWGAVRTIDGKKQRILGVVL 759


>gi|255066285|ref|ZP_05318140.1| penicilin-binding protein [Neisseria sicca ATCC 29256]
 gi|255049495|gb|EET44959.1| penicilin-binding protein [Neisseria sicca ATCC 29256]
          Length = 313

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 103/223 (46%), Gaps = 16/223 (7%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALI 136
           AS++K+M+  ++ +     +L +N +I ++     +   +   L   T  T  + +   +
Sbjct: 99  ASISKLMSAMVVLD----ARLDMNERITITSDEIDRLKGTGSRLAVGTTLTRGELLHLSL 154

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD--- 193
             S N  + A G    G    F   M+ KA+ +GM ++ +   +GL+ +N ++TA D   
Sbjct: 155 MSSENRATHALGRTYPGGMSAFVAAMNAKAQSLGMHSSRFYEPTGLNFQN-VSTANDLNR 213

Query: 194 ---QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK-MHNIDGIKTGYTRNSG 249
               A    L+RKN    Y        R   +   N N L+ +   NI+  KTGY R +G
Sbjct: 214 MVAAASKYPLIRKNTTSNYGSVWTANGRQNYK---NSNALVREGSWNIELQKTGYIREAG 270

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
            ++V     ++ PI  V++  PTS  R   A ++ +  L++++
Sbjct: 271 RSMVVKANVQNQPITIVLLNSPTSTTRVNDARKIESWMLQRRS 313


>gi|161613143|ref|YP_001587108.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161362507|gb|ABX66275.1| hypothetical protein SPAB_00851 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 313

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS+TK+MT  ++ +     +L L+    + K   +Q
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD----ARLPLDE---ILKVDISQ 94

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +   +  G    F   M+ KAK 
Sbjct: 95  TPEMKGVYSRVRLNSEISRKNMLLLALMS-SENRAAASLAHYYPGGYNAFIKAMNAKAKA 153

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM +T +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 154 LGMTHTRFVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTREDMATFSHPAYTL 211

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 212 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 258


>gi|16765498|ref|NP_461113.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|168242251|ref|ZP_02667183.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168466155|ref|ZP_02700025.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|194445434|ref|YP_002041439.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|197251040|ref|YP_002147139.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|207857603|ref|YP_002244254.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213161142|ref|ZP_03346852.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213428230|ref|ZP_03360980.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|224583331|ref|YP_002637129.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238912611|ref|ZP_04656448.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|16420704|gb|AAL21072.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|194404097|gb|ACF64319.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|195631155|gb|EDX49715.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197214743|gb|ACH52140.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|205338411|gb|EDZ25175.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|206709406|emb|CAR33747.1| penicillin-binding protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467858|gb|ACN45688.1| D-alanyl-D-alanine endopeptidase; penicillin-binding protein 7 and
           penicillin-binding protein 8 [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|267994231|gb|ACY89116.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|312913159|dbj|BAJ37133.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224821|gb|EFX49884.1| Murein-DD-endopeptidase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322615196|gb|EFY12118.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617787|gb|EFY14683.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624619|gb|EFY21450.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626930|gb|EFY23726.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634116|gb|EFY30852.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635693|gb|EFY32403.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640172|gb|EFY36836.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646405|gb|EFY42917.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649373|gb|EFY45809.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656493|gb|EFY52782.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322661469|gb|EFY57693.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665643|gb|EFY61827.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667167|gb|EFY63334.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671173|gb|EFY67301.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675187|gb|EFY71264.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680795|gb|EFY76830.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686970|gb|EFY82947.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323130495|gb|ADX17925.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323192734|gb|EFZ77961.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198834|gb|EFZ83933.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323205156|gb|EFZ90134.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208199|gb|EFZ93143.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323215776|gb|EGA00519.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222875|gb|EGA07231.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323223859|gb|EGA08162.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231222|gb|EGA15337.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233656|gb|EGA17748.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237726|gb|EGA21786.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245709|gb|EGA29703.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248926|gb|EGA32850.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253002|gb|EGA36835.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323258678|gb|EGA42340.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259510|gb|EGA43145.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323268293|gb|EGA51768.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271918|gb|EGA55334.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624002|gb|EGE30347.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326628395|gb|EGE34738.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332989102|gb|AEF08085.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 315

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS+TK+MT  ++ +     +L L+    + K   +Q
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD----ARLPLDE---ILKVDISQ 94

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +   +  G    F   M+ KAK 
Sbjct: 95  TPEMKGVYSRVRLNSEISRKNMLLLALMS-SENRAAASLAHYYPGGYNAFIKAMNAKAKA 153

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM +T +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 154 LGMTHTRFVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTREDMATFSHPAYTL 211

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 212 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 258


>gi|255348929|ref|ZP_05380936.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis 70]
 gi|255503469|ref|ZP_05381859.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis 70s]
 gi|255507147|ref|ZP_05382786.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
           D(s)2923]
 gi|289525596|emb|CBJ15074.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis Sweden2]
 gi|296435156|gb|ADH17334.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis E/150]
 gi|296438876|gb|ADH21029.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis E/11023]
          Length = 437

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 110/251 (43%), Gaps = 36/251 (14%)

Query: 76  YPASLTKMMTLYIIFE--------YLQSKKLHLNTQIPVSKT-AATQNPSK--------L 118
           +PAS+TK+ T  +I          ++ +++  L +  P +K  +  ++P          +
Sbjct: 58  FPASMTKIATALLILRQYPDVLTRFITTRREPLTSITPQAKQQSGYRSPPHWLETDGMTI 117

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            LK K   +      AL+  SAND +    +    S   F   ++   +++G QNT + +
Sbjct: 118 QLKVKEEVSGWDLFHALLISSANDAANVLADACCQSVSAFMRQLNEFLRELGCQNTHFNS 177

Query: 179 ASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYR------NRIITNHNKL 230
             GLH  +  TTARD   L +++++    P + +      +          R++++ NKL
Sbjct: 178 PHGLHHPDHYTTARD---LSLIMKEALKEPLFRQVIHTASYTMEATNLSPERVLSSTNKL 234

Query: 231 LNKMHN-----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM--PTSQERDQKALEL 283
           L+           G KTG T+++G NI+ +    +  I+ V  G   P +Q   Q A+ L
Sbjct: 235 LSSSSTYFYPPCLGGKTGTTKSAGKNIIFAAEKNNRSIIVVAAGYFGPAAQLY-QDAIAL 293

Query: 284 ITSFLEKKTLK 294
                 ++ L+
Sbjct: 294 CEDLFNEQLLR 304


>gi|221198438|ref|ZP_03571484.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           multivorans CGD2M]
 gi|221208885|ref|ZP_03581882.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           multivorans CGD2]
 gi|221171168|gb|EEE03618.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           multivorans CGD2]
 gi|221182370|gb|EEE14771.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           multivorans CGD2M]
          Length = 381

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 104/247 (42%), Gaps = 32/247 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N  +    K      P AS++K+MT  ++ +   
Sbjct: 110 VGQAFGLHDTPDALALRSSVAYVVDQNTGEPLFDKNSHAVVPIASISKLMTAMVVLD--- 166

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  +  QI V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 167 -SKAPMTEQIEVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPG 225

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM +T ++N++GL   N +++ARD       L K     Y+Y  
Sbjct: 226 GRPAFIAAMNAKAKALGMTDTHFENSTGLSSSN-VSSARD-------LVKMVNAAYQYPL 277

Query: 214 IRKFRY----------RNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           IRKF            RN +  + N L+  N   +I   KTG+   +G  +V        
Sbjct: 278 IRKFSTDRTYEVYTGKRNLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGR 337

Query: 262 PIVAVVM 268
           P+V V++
Sbjct: 338 PVVMVLL 344


>gi|255323933|ref|ZP_05365059.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
           tuberculostearicum SK141]
 gi|255299113|gb|EET78404.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
           tuberculostearicum SK141]
          Length = 397

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 92/210 (43%), Gaps = 20/210 (9%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++  ++   K    RY PAS+ K +   ++ +     +L L+ ++ V + +A  + 
Sbjct: 96  MVSDIDSGEIIAMKDPNGRYRPASIIKALLALVVID-----ELDLHQKVEVGEESAQIDG 150

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S + +     +T EQ +  L+  S ND + A  + + G E      ++ KA +IG  +T 
Sbjct: 151 SAVGIGPGGTYTVEQLLQGLLMASGNDAAHALAQELGGDEATLR-KVNEKAAEIGTNSTY 209

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYRNRI------ITNH 227
             + SGL      T+A D   +  + R  F  P + +        +          + N 
Sbjct: 210 AASYSGLDAPGMSTSAED---ISRIYRAAFHNPTFARIVDTESVDFPGWGDLDGYQLGND 266

Query: 228 NKL-LNKMHNIDGIKTGYTRNSGFNIVTSL 256
           N L LN    I G KTG+T ++    V +L
Sbjct: 267 NGLFLNDPDGIGG-KTGFTDDAHHTFVGAL 295


>gi|74058494|gb|AAZ98837.1| VanYD [Enterococcus gallinarum]
          Length = 346

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 114/261 (43%), Gaps = 38/261 (14%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ-SKKLHLNTQIPVSKTAAT 112
           ++IVI+ + N+    K+   +  PAS  KM+T   + +Y   + ++ +  +I +      
Sbjct: 93  NAIVINADTNETLYQKKSTDKIAPASTAKMITALTVLDYCSPNDEMRVGAEIELMH---- 148

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF----GEFISG--------SEKKFAI 160
            + S+ +L +    T  Q ++AL+  S ND +       G+ I+G        S   F  
Sbjct: 149 DDSSRAWLMQGDTLTVRQLLVALMLPSGNDAAYTLAVNTGKKIAGDNGLSNAQSIDVFMD 208

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN---------FPQYYKY 211
            ++ KAK +G +N+ +    G     Q TTA D A++      +         +  Y ++
Sbjct: 209 KVNQKAKSLGAENSNFVVPDGYDADGQYTTAYDLAVIAKACLDDPYISEIVASYSSYERW 268

Query: 212 FSIRKFRYRNRIITNHNKLLNKMH-----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
            + R+  Y N      N+LLN         + G+KTG +   G  IV++     +  +  
Sbjct: 269 PNGREVTYNNT-----NELLNPNSPYYRPEVIGLKTGTSSLGGACIVSAAVINGNTYICA 323

Query: 267 VMGMPTSQERDQKALELITSF 287
           VMG  T  +R Q  +++I + 
Sbjct: 324 VMG-STENDRFQDGIDIIDAI 343


>gi|161869693|ref|YP_001598860.1| D-alanyl-D-alanine-endopeptidase [Neisseria meningitidis 053442]
 gi|161595246|gb|ABX72906.1| D-alanyl-D-alanine-endopeptidase [Neisseria meningitidis 053442]
          Length = 316

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 110/224 (49%), Gaps = 18/224 (8%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILA 134
           AS++K+M+  ++ +      L +N  + ++     +     S+L +   T  T ++ +  
Sbjct: 102 ASISKLMSAMVVLD----ANLDMNETVTITPDEIDRIKGTGSRLAIG--TALTRKELLHL 155

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A G    G    F   M+ KA+ +GM ++ +   +GL+ +N ++TA+D 
Sbjct: 156 SLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLGMYSSRFYEPTGLNFQN-VSTAKDL 214

Query: 195 AILGILLRKNFPQY-----YKYFSIRKFRYRNRIITNHNKLLNK-MHNIDGIKTGYTRNS 248
           +++ +     +PQ        Y S++  +   +   N N L+ + M NI+  KTGY R +
Sbjct: 215 SLM-VNAAAQYPQIRTNSTSNYASVQT-KNGQQNYKNSNALVREGMWNIELQKTGYIREA 272

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           G ++V     ++ P+  V++  PTS  R   A ++ +  L++++
Sbjct: 273 GRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIESWMLQQRS 316


>gi|15605280|ref|NP_220066.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
           D/UW-3/CX]
 gi|3328991|gb|AAC68153.1| D-Ala-D-Ala Carboxypeptidase [Chlamydia trachomatis D/UW-3/CX]
          Length = 343

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 110/251 (43%), Gaps = 36/251 (14%)

Query: 76  YPASLTKMMTLYIIFE--------YLQSKKLHLNTQIPVSKT-AATQNPSK--------L 118
           +PAS+TK+ T  +I          ++ +++  L +  P +K  +  ++P          +
Sbjct: 58  FPASMTKIATALLILRQYPDVLTRFITTRREPLTSITPQAKQQSGYRSPPHWLETDGMTI 117

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            LK K   +      AL+  SAND +    +    S   F   ++   +++G QNT + +
Sbjct: 118 QLKVKEEVSGWDLFHALLISSANDAANVLADACCQSVSAFMRQLNEFLRELGCQNTHFNS 177

Query: 179 ASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYR------NRIITNHNKL 230
             GLH  +  TTARD   L +++++    P + +      +          R++++ NKL
Sbjct: 178 PHGLHHPDHYTTARD---LSLIMKEALKEPLFRQVIHTASYTMEATNLSPERVLSSTNKL 234

Query: 231 LNKMHN-----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM--PTSQERDQKALEL 283
           L+           G KTG T+++G NI+ +    +  I+ V  G   P +Q   Q A+ L
Sbjct: 235 LSSSSTYFYPPCLGGKTGTTKSAGKNIIFAAEKNNRSIIVVAAGYFGPAAQLY-QDAIAL 293

Query: 284 ITSFLEKKTLK 294
                 ++ L+
Sbjct: 294 CEDLFNEQLLR 304


>gi|194449016|ref|YP_002046221.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194469108|ref|ZP_03075092.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736053|ref|YP_002115257.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197262067|ref|ZP_03162141.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197300824|ref|ZP_02661392.2| D-alanyl-D-alanine endopeptidase (DD-endopeptidase) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197361849|ref|YP_002141485.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198244375|ref|YP_002216252.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200387930|ref|ZP_03214542.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204929084|ref|ZP_03220227.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205353306|ref|YP_002227107.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205357645|ref|ZP_02572191.2| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205358255|ref|ZP_02654578.2| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205360216|ref|ZP_02681467.2| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|213584224|ref|ZP_03366050.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213647182|ref|ZP_03377235.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213852329|ref|ZP_03381861.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|194407320|gb|ACF67539.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194455472|gb|EDX44311.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194711555|gb|ACF90776.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197093325|emb|CAR58773.1| penicillin-binding protein 7 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197240322|gb|EDY22942.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197290536|gb|EDY29891.1| D-alanyl-D-alanine endopeptidase (DD-endopeptidase) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197938891|gb|ACH76224.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199605028|gb|EDZ03573.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321628|gb|EDZ06827.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205273087|emb|CAR38040.1| penicillin-binding protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205330584|gb|EDZ17348.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205335922|gb|EDZ22686.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205350646|gb|EDZ37277.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|261247382|emb|CBG25207.1| penicillin-binding protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|301158730|emb|CBW18242.1| penicillin-binding protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
          Length = 302

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS+TK+MT  ++ +     +L L+    + K   +Q
Sbjct: 29  SAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD----ARLPLDE---ILKVDISQ 81

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +   +  G    F   M+ KAK 
Sbjct: 82  TPEMKGVYSRVRLNSEISRKNMLLLALMS-SENRAAASLAHYYPGGYNAFIKAMNAKAKA 140

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM +T +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 141 LGMTHTRFVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTREDMATFSHPAYTL 198

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 199 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 245


>gi|331091254|ref|ZP_08340095.1| hypothetical protein HMPREF9477_00738 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404701|gb|EGG84240.1| hypothetical protein HMPREF9477_00738 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 235

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 8/122 (6%)

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI------- 223
           M+NT + N +GL     +TTARD A++   L   +P+ +KY  I +    +         
Sbjct: 1   MKNTHFVNCNGLDADGHLTTARDIALMSRELITKYPEVHKYTKIWQENITHETKKGTSKF 60

Query: 224 -ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            +TN NK + +     G+KTG T  + F +  +       ++AVVM  P +++R + A+ 
Sbjct: 61  GLTNTNKFIRQYPYATGLKTGSTGKAKFCLSATAEKDKVNLIAVVMASPNAKQRVKDAVT 120

Query: 283 LI 284
           L+
Sbjct: 121 LM 122


>gi|161524312|ref|YP_001579324.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           multivorans ATCC 17616]
 gi|189350932|ref|YP_001946560.1| D-alanyl-D-alanine endopeptidase [Burkholderia multivorans ATCC
           17616]
 gi|221214784|ref|ZP_03587753.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           multivorans CGD1]
 gi|160341741|gb|ABX14827.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           multivorans ATCC 17616]
 gi|189334954|dbj|BAG44024.1| D-alanyl-D-alanine endopeptidase [Burkholderia multivorans ATCC
           17616]
 gi|221165323|gb|EED97800.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           multivorans CGD1]
          Length = 381

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 104/247 (42%), Gaps = 32/247 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N  +    K      P AS++K+MT  ++ +   
Sbjct: 110 VGQAFGLHDTPDALALRSSVAYVVDQNTGEPLFDKNSHAVVPIASISKLMTAMVVLD--- 166

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  +  QI V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 167 -SKAPMTEQIEVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPG 225

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM +T ++N++GL   N +++ARD       L K     Y+Y  
Sbjct: 226 GRPAFIAAMNAKAKALGMTDTHFENSTGLSSSN-VSSARD-------LVKMVNAAYQYPL 277

Query: 214 IRKFRY----------RNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           IRKF            RN +  + N L+  N   +I   KTG+   +G  +V        
Sbjct: 278 IRKFSTDRTYEVYTGKRNLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGR 337

Query: 262 PIVAVVM 268
           P+V V++
Sbjct: 338 PVVMVLL 344


>gi|291563266|emb|CBL42082.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
           SS3/4]
          Length = 322

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 66/152 (43%), Gaps = 15/152 (9%)

Query: 69  FKQD--EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYF 126
           F QD  E R PAS TK+MT  I  +Y     L     +P          S   +      
Sbjct: 88  FAQDVFERRNPASTTKVMTALIALKY---GNLDDVVTVPQESVITESGSSMAGVVPGDKL 144

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           T EQ +  L+  S ND + A    + GS + F  +M+ +A +IG   T + NA+GL + +
Sbjct: 145 TLEQLLYGLLIPSGNDAANAIAVHMGGSIEGFVKMMNEEAVQIGATGTHFANANGLTNAD 204

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
              TA D  ++       F +  KY    KFR
Sbjct: 205 HYMTAYDLYLM-------FHEALKY---EKFR 226


>gi|166154766|ref|YP_001654884.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis 434/Bu]
 gi|166155641|ref|YP_001653896.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301336040|ref|ZP_07224284.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis L2tet1]
 gi|165930754|emb|CAP04251.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis 434/Bu]
 gi|165931629|emb|CAP07205.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 437

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 110/251 (43%), Gaps = 36/251 (14%)

Query: 76  YPASLTKMMTLYIIFE--------YLQSKKLHLNTQIPVSKT-AATQNPSK--------L 118
           +PAS+TK+ T  +I          ++ +++  L +  P +K  +  ++P          +
Sbjct: 58  FPASMTKIATALLILRQYPDVLTRFITTRREPLTSITPQAKQQSGYRSPPHWLETDGMTI 117

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            LK K   +      AL+  SAND +    +    S   F   ++   +++G QNT + +
Sbjct: 118 QLKVKEEVSGWDLFHALLISSANDAANVLADACCQSVSAFMRQLNEFLRELGCQNTHFNS 177

Query: 179 ASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYR------NRIITNHNKL 230
             GLH  +  TTARD   L +++++    P + +      +          R++++ NKL
Sbjct: 178 PHGLHHPDHYTTARD---LSLIMKEALKEPLFRQVIHTASYTMEATNLSPERVLSSTNKL 234

Query: 231 LNKMHN-----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM--PTSQERDQKALEL 283
           L+           G KTG T+++G NI+ +    +  I+ V  G   P +Q   Q A+ L
Sbjct: 235 LSSSSTYFYPPCLGGKTGTTKSAGKNIIFAAEKNNRSIIVVAAGYFGPAAQLY-QDAIAL 293

Query: 284 ITSFLEKKTLK 294
                 ++ L+
Sbjct: 294 CEDLFNEQLLR 304


>gi|304387942|ref|ZP_07370115.1| D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis ATCC
           13091]
 gi|304338039|gb|EFM04176.1| D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis ATCC
           13091]
          Length = 316

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 110/224 (49%), Gaps = 18/224 (8%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILA 134
           AS++K+M+  ++ +      L +N  + ++     +     S+L +   T  T ++ +  
Sbjct: 102 ASISKLMSAMVVLD----ANLDMNETVTITPDEIDRIKGTGSRLAIG--TALTRKELLHL 155

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A G    G    F   M+ KA+ +GM ++ +   +GL+ +N ++TA+D 
Sbjct: 156 SLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLGMYSSRFYEPTGLNFQN-VSTAKDL 214

Query: 195 AILGILLRKNFPQY-----YKYFSIRKFRYRNRIITNHNKLLNK-MHNIDGIKTGYTRNS 248
           +++ +     +PQ        Y S++  +   +   N N L+ + M NI+  KTGY R +
Sbjct: 215 SLM-VNAAAQYPQIRTNSTSNYASVQT-KNGQQNYKNSNALVREGMWNIELQKTGYIREA 272

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           G ++V     ++ P+  V++  PTS  R   A ++ +  L++++
Sbjct: 273 GRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIESWMLQQRS 316


>gi|296840908|ref|ZP_06863761.2| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           polysaccharea ATCC 43768]
 gi|296839544|gb|EFH23482.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           polysaccharea ATCC 43768]
          Length = 335

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 110/224 (49%), Gaps = 18/224 (8%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILA 134
           AS++K+M+  ++ +      L +N  + ++     +     S+L +   T  T ++ +  
Sbjct: 121 ASISKLMSAMVVLD----ANLDMNETVTITPDEIDRLKGTGSRLAIG--TALTRKELLHL 174

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A G    G    F   M+ KA+ +GM ++ +   +GL+ +N ++TA+D 
Sbjct: 175 SLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLGMYSSRFYEPTGLNFQN-VSTAKDL 233

Query: 195 AILGILLRKNFPQY-----YKYFSIRKFRYRNRIITNHNKLLNK-MHNIDGIKTGYTRNS 248
           +++ +     +PQ        Y S++  +   +   N N L+ + M NI+  KTGY R +
Sbjct: 234 SLM-VNAAAQYPQIRTNSTSNYASVQT-KNGQQNYKNSNALVREGMWNIELQKTGYIREA 291

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           G ++V     ++ P+  V++  PTS  R   A ++ +  L++++
Sbjct: 292 GRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIESWMLQQRS 335


>gi|255311369|ref|ZP_05353939.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis 6276]
 gi|255317670|ref|ZP_05358916.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis 6276s]
 gi|296436084|gb|ADH18258.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis G/9768]
 gi|296437012|gb|ADH19182.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis G/11222]
 gi|296437945|gb|ADH20106.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis G/11074]
 gi|297140445|gb|ADH97203.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis G/9301]
 gi|297748681|gb|ADI51227.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis D-EC]
 gi|297749561|gb|ADI52239.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis D-LC]
          Length = 437

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 110/251 (43%), Gaps = 36/251 (14%)

Query: 76  YPASLTKMMTLYIIFE--------YLQSKKLHLNTQIPVSKT-AATQNPSK--------L 118
           +PAS+TK+ T  +I          ++ +++  L +  P +K  +  ++P          +
Sbjct: 58  FPASMTKIATALLILRQYPDVLTRFITTRREPLTSITPQAKQQSGYRSPPHWLETDGMTI 117

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            LK K   +      AL+  SAND +    +    S   F   ++   +++G QNT + +
Sbjct: 118 QLKVKEEVSGWDLFHALLISSANDAANVLADACCQSVSAFMRQLNEFLRELGCQNTHFNS 177

Query: 179 ASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYR------NRIITNHNKL 230
             GLH  +  TTARD   L +++++    P + +      +          R++++ NKL
Sbjct: 178 PHGLHHPDHYTTARD---LSLIMKEALKEPLFRQVIHTASYTMEATNLSPERVLSSTNKL 234

Query: 231 LNKMHN-----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM--PTSQERDQKALEL 283
           L+           G KTG T+++G NI+ +    +  I+ V  G   P +Q   Q A+ L
Sbjct: 235 LSSSSTYFYPPCLGGKTGTTKSAGKNIIFAAEKNNRSIIVVAAGYFGPAAQLY-QDAIAL 293

Query: 284 ITSFLEKKTLK 294
                 ++ L+
Sbjct: 294 CEDLFNEQLLR 304


>gi|171912390|ref|ZP_02927860.1| Serine-type D-Ala-D-Ala carboxypeptidase [Verrucomicrobium spinosum
           DSM 4136]
          Length = 325

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 111/250 (44%), Gaps = 34/250 (13%)

Query: 33  KILFLSII-MISMASELHAKPKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIF 90
           K+L ++++   + AS +HA+   S I +DV NK        +  R    LTKM T  +  
Sbjct: 17  KLLSVTVVACFAGASTVHAQ--SSVIAVDVYNKKIHVEAGGNLKRPVGGLTKMATALVAL 74

Query: 91  EYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           ++ ++ K+ LNT   VS  A   A  NP +L   ++   T    + A +  S N  +T  
Sbjct: 75  DWSEATKVPLNTLATVSPEALQIAGMNPLQLVPGDQ--ITLRDLLYASMMSSDNVAATTL 132

Query: 148 GEFI----------SGSE-KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI--TTARDQ 194
             F+          +G     F   M+  A + GM NT + N  GL +   +  +TA D 
Sbjct: 133 ALFVGQDINYRRGRTGDPLAAFVTEMNYLAAREGMVNTKFTNPHGLENSRSVPYSTAADM 192

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRI---------ITNHNKLLNKMHNIDGIKTGYT 245
           A L +      P  +++++ +K R    +         + N N LL  +  IDGIKTG T
Sbjct: 193 ARLSMYAISRAP--FRFYTNQKTRNITVLRGGQPVSVPMQNTNALLG-VGMIDGIKTGNT 249

Query: 246 RNSGFNIVTS 255
             SG  ++ S
Sbjct: 250 PRSGGCVIVS 259


>gi|121634547|ref|YP_974792.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria meningitidis
           FAM18]
 gi|120866253|emb|CAM09994.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria meningitidis
           FAM18]
          Length = 316

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 109/224 (48%), Gaps = 18/224 (8%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILA 134
           AS++K+M+  ++ +      L +N  + ++     +     S+L +   T  T ++ +  
Sbjct: 102 ASISKLMSAMVVLD----ANLDMNETVTITPDEIDRLKGTGSRLAIG--TALTRKELLHL 155

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A G    G    F   M+ KA+ +GM  + +   +GL+ +N ++TA+D 
Sbjct: 156 SLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLGMYGSRFYEPTGLNFQN-VSTAKDL 214

Query: 195 AILGILLRKNFPQY-----YKYFSIRKFRYRNRIITNHNKLLNK-MHNIDGIKTGYTRNS 248
           +++ +     +PQ        Y S++  +   +   N N L+ + M NI+  KTGY R +
Sbjct: 215 SLM-VNAAAQYPQIRTNSTSNYASVQT-KNGQQNYKNSNALVREGMWNIELQKTGYIREA 272

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           G ++V     ++ P+  V++  PTS  R   A ++ +  L++++
Sbjct: 273 GRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIESWMLQQRS 316


>gi|56412918|ref|YP_149993.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|56127175|gb|AAV76681.1| penicillin-binding protein 7 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
          Length = 315

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS+TK+MT  ++ +     +L L+    + K   +Q
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD----ARLPLDE---ILKVDISQ 94

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +   +  G    F   M+ KAK 
Sbjct: 95  TPEMKGVYSRVRLNSEISRKNMLLLALMS-SENRAAASLAHYYPGGYNAFIKAMNAKAKA 153

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM +T +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 154 LGMTHTRFVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTREDMATFSHPAYTL 211

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 212 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 258


>gi|319410119|emb|CBY90455.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase;
           DD-peptidase; DD-carboxypeptidase) [Neisseria
           meningitidis WUE 2594]
          Length = 316

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 109/224 (48%), Gaps = 18/224 (8%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILA 134
           AS++K+M+  ++ +      L +N  + ++     +     S+L +   T  T ++ +  
Sbjct: 102 ASISKLMSAMVVLD----ANLDMNETVTITPDEIDRIKGTGSRLAIG--TALTRKELLHL 155

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A G    G    F   M+ KA+ +GM  + +   +GL+ +N ++TA+D 
Sbjct: 156 SLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLGMYGSRFYEPTGLNFQN-VSTAKDL 214

Query: 195 AILGILLRKNFPQY-----YKYFSIRKFRYRNRIITNHNKLLNK-MHNIDGIKTGYTRNS 248
           +++ +     +PQ        Y S++  +   +   N N L+ + M NI+  KTGY R +
Sbjct: 215 SLM-VNAAAQYPQIRTNSTSNYASVQT-KNGQQNYKNSNALVREGMWNIELQKTGYIREA 272

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           G ++V     ++ P+  V++  PTS  R   A ++ +  L++++
Sbjct: 273 GRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIESWMLQQRS 316


>gi|330831299|ref|YP_004394251.1| D-alanyl-D-alanine carboxypeptidase; penicillin binding protein 7
           [Aeromonas veronii B565]
 gi|328806435|gb|AEB51634.1| D-alanyl-D-alanine carboxypeptidase; penicillin binding protein 7
           [Aeromonas veronii B565]
          Length = 259

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 110/217 (50%), Gaps = 19/217 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEP--RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S++V+DV K   T ++++    R  ASLTK+MT  ++ +  Q    +LN  I V K    
Sbjct: 22  SALVVDV-KTGKTLYQKNATKVRPIASLTKLMTALVVLDAKQ----NLNQTITVDKNDLD 76

Query: 113 Q-NPSKLYLKEKTYFTTEQGI-LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           +   +   ++  T  T    + LAL++ S N +++A      G    F   M+NKA+++G
Sbjct: 77  RVKHTHSRIRMGTKVTRRDALHLALMS-SENRMASALARHYPGGRSAFVRAMNNKARQLG 135

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILL-RKNFPQYYKYFSIRKFRYR----NRIIT 225
           M+NT + +++GL  +N ++TA+D   L     R+   + +     R+ R+     + +  
Sbjct: 136 MRNTHFYDSTGLSTRN-VSTAQDLGKLAAAAYRQPLIRQFTQDENREMRFSAPAYSLMFN 194

Query: 226 NHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           N N L+ N   ++   KTG+T  +G  +V  +R K D
Sbjct: 195 NTNPLVKNPDWDVRLSKTGFTDEAGRCLV--MRAKPD 229


>gi|254804631|ref|YP_003082852.1| probable D-alanyl-D-alanine carboxypeptidase [Neisseria
           meningitidis alpha14]
 gi|254668173|emb|CBA04859.1| probable D-alanyl-D-alanine carboxypeptidase [Neisseria
           meningitidis alpha14]
          Length = 369

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 120/248 (48%), Gaps = 19/248 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V++    Q+   K  +   P AS++K+M+  ++ +      L +N  + ++     +
Sbjct: 131 SALVVNNKTGQILYQKNADRIMPIASISKLMSAMVVLD----ANLDMNETVTITPDEIDR 186

Query: 114 ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S+L +   T  T ++ +   +  S N  + A G    G    F   M+ KA+ +G
Sbjct: 187 LKGTGSRLAIG--TALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLG 244

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY-----YKYFSIRKFRYRNRIIT 225
           M  + +   +GL+ +N ++TA+D +++ +     +PQ        Y S++  +   +   
Sbjct: 245 MYGSRFYEPTGLNFQN-VSTAKDLSLM-VNAAAQYPQIRTNSTSNYASVQT-KNGQQNYK 301

Query: 226 NHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ + M NI+  KTGY R +G ++V     ++ P+  V++  PTS  R   A ++ 
Sbjct: 302 NSNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIE 361

Query: 285 TSFLEKKT 292
           +  L++++
Sbjct: 362 SWMLQQRS 369


>gi|301384572|ref|ZP_07232990.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. tomato
           Max13]
          Length = 313

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 21/226 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  +++      +   P AS+TK+MT  I+ +  QS    ++  IPV+    +Q
Sbjct: 46  SAMVVDLQTDKVLYSSNPDVIVPIASVTKLMTAMIVLDAKQS----MDEVIPVN---ISQ 98

Query: 114 NPSKLYLKEKTYFTTEQG----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +  +    +E      +L  +  S N  + +      G    F + M+ KAK +
Sbjct: 99  TPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 158

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRII- 224
           GM++T Y   +GL   N ++TARD   L +  RK +P   +  +  +    FR    I+ 
Sbjct: 159 GMKHTAYVEPTGLSVYN-VSTARDLTKLVMAARK-YPLLSELSTTEQKTVTFRKPTYILG 216

Query: 225 -TNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            +N + L+ K + +I   KTG+T  +G  +V      + P+  V++
Sbjct: 217 FSNTDHLVRKENWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVIL 262


>gi|261392880|emb|CAX50461.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase;
           DD-peptidase; DD-carboxypeptidase) [Neisseria
           meningitidis 8013]
 gi|325203838|gb|ADY99291.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           meningitidis M01-240355]
          Length = 312

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 110/224 (49%), Gaps = 18/224 (8%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILA 134
           AS++K+M+  ++ +      L +N  + ++     +     S+L +   T  T ++ +  
Sbjct: 98  ASISKLMSAMVVLD----ANLDMNETVTITPDEIDRLKGTGSRLAIG--TALTRKELLHL 151

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A G    G    F   M+ KA+ +GM ++ +   +GL+ +N ++TA+D 
Sbjct: 152 SLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLGMYSSRFYEPTGLNFQN-VSTAKDL 210

Query: 195 AILGILLRKNFPQY-----YKYFSIRKFRYRNRIITNHNKLLNK-MHNIDGIKTGYTRNS 248
           +++ +     +PQ        Y S++  +   +   N N L+ + M NI+  KTGY R +
Sbjct: 211 SLM-VNAAAQYPQIRTNSTSNYASVQT-KNGQQNYKNSNALVREGMWNIELQKTGYIREA 268

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           G ++V     ++ P+  V++  PTS  R   A ++ +  L++++
Sbjct: 269 GRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIESWMLQQRS 312


>gi|254669736|emb|CBA03920.1| probable D-alanyl-D-alanine carboxypeptidase [Neisseria
           meningitidis alpha153]
          Length = 369

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 120/248 (48%), Gaps = 19/248 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V++    Q+   K  +   P AS++K+M+  ++ +      L +N  + ++     +
Sbjct: 131 SALVVNNKTGQILYQKNADRIMPIASISKLMSAMVVLD----ANLDMNETVTITPDEIDR 186

Query: 114 ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S+L +   T  T ++ +   +  S N  + A G    G    F   M+ KA+ +G
Sbjct: 187 IKGTGSRLAIG--TALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLG 244

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY-----YKYFSIRKFRYRNRIIT 225
           M  + +   +GL+ +N ++TA+D +++ +     +PQ        Y S++  +   +   
Sbjct: 245 MYGSRFYEPTGLNFQN-VSTAKDLSLM-VNAAAQYPQIRTNSTSNYASVQT-KNGQQNYK 301

Query: 226 NHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ + M NI+  KTGY R +G ++V     ++ P+  V++  PTS  R   A ++ 
Sbjct: 302 NSNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIE 361

Query: 285 TSFLEKKT 292
           +  L++++
Sbjct: 362 SWMLQQRS 369


>gi|316983735|gb|EFV62716.1| D-alanyl-D-alanine endopeptidase [Neisseria meningitidis H44/76]
 gi|325197971|gb|ADY93427.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           meningitidis G2136]
          Length = 312

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 109/224 (48%), Gaps = 18/224 (8%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILA 134
           AS++K+M+  ++ +      L +N  + ++     +     S+L +   T  T ++ +  
Sbjct: 98  ASISKLMSAMVVLD----ANLDMNETVTITPDEIDRLKGTGSRLAIG--TALTRKELLHL 151

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A G    G    F   M+ KA+ +GM  + +   +GL+ +N ++TA+D 
Sbjct: 152 SLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLGMYGSRFYEPTGLNFQN-VSTAKDL 210

Query: 195 AILGILLRKNFPQY-----YKYFSIRKFRYRNRIITNHNKLLNK-MHNIDGIKTGYTRNS 248
           +++ +     +PQ        Y S++  +   +   N N L+ + M NI+  KTGY R +
Sbjct: 211 SLM-VNAAAQYPQIRTNSTSNYASVQT-KNGQQNYKNSNALVREGMWNIELQKTGYIREA 268

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           G ++V     ++ P+  V++  PTS  R   A ++ +  L++++
Sbjct: 269 GRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIESWMLQQRS 312


>gi|71736880|ref|YP_274768.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557433|gb|AAZ36644.1| penicillin-binding protein 7 [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 311

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 105/227 (46%), Gaps = 23/227 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++VID+  +++      +   P AS+TK+MT  ++ +  QS    ++  IPV+    +Q
Sbjct: 44  SAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVVLDAKQS----MDEVIPVN---ISQ 96

Query: 114 NPSKLYLKEKTYFTTEQG----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +  +    +E      +L  +  S N  + +      G    F + M+ KAK +
Sbjct: 97  TPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 156

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-------KYFSIRKFRYRNR 222
           GM++T Y   +GL   N ++TARD   L +  RK +P          K  + RK  Y   
Sbjct: 157 GMKHTAYVEPTGLSVYN-VSTARDLTKLVMAARK-YPMLSELSTTEQKTVTFRKPTY-TL 213

Query: 223 IITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +N + LL K + +I   KTG+T  +G  +V      + P+  V++
Sbjct: 214 GFSNTDHLLRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVIL 260


>gi|218767872|ref|YP_002342384.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria meningitidis
           Z2491]
 gi|121051880|emb|CAM08186.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria meningitidis
           Z2491]
 gi|308388939|gb|ADO31259.1| putative D-alanyl-D-alanine-endopeptidase; penicillin-binding
           protein 4 [Neisseria meningitidis alpha710]
 gi|325127864|gb|EGC50770.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           meningitidis N1568]
 gi|325131795|gb|EGC54495.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           meningitidis M6190]
 gi|325133735|gb|EGC56391.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           meningitidis M13399]
 gi|325136025|gb|EGC58635.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           meningitidis M0579]
 gi|325137845|gb|EGC60420.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           meningitidis ES14902]
 gi|325144211|gb|EGC66518.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           meningitidis M01-240013]
 gi|325202452|gb|ADY97906.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           meningitidis M01-240149]
 gi|325206406|gb|ADZ01859.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           meningitidis M04-240196]
 gi|325207796|gb|ADZ03248.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           meningitidis NZ-05/33]
          Length = 312

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 109/224 (48%), Gaps = 18/224 (8%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILA 134
           AS++K+M+  ++ +      L +N  + ++     +     S+L +   T  T ++ +  
Sbjct: 98  ASISKLMSAMVVLD----ANLDMNETVTITPDEIDRIKGTGSRLAIG--TALTRKELLHL 151

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A G    G    F   M+ KA+ +GM  + +   +GL+ +N ++TA+D 
Sbjct: 152 SLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLGMYGSRFYEPTGLNFQN-VSTAKDL 210

Query: 195 AILGILLRKNFPQY-----YKYFSIRKFRYRNRIITNHNKLLNK-MHNIDGIKTGYTRNS 248
           +++ +     +PQ        Y S++  +   +   N N L+ + M NI+  KTGY R +
Sbjct: 211 SLM-VNAAAQYPQIRTNSTSNYASVQT-KNGQQNYKNSNALVREGMWNIELQKTGYIREA 268

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           G ++V     ++ P+  V++  PTS  R   A ++ +  L++++
Sbjct: 269 GRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIESWMLQQRS 312


>gi|167570535|ref|ZP_02363409.1| family S11 unassigned peptidase [Burkholderia oklahomensis C6786]
          Length = 363

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 104/246 (42%), Gaps = 31/246 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N ++    K      P AS+TK+MT  ++ +   
Sbjct: 93  VGQAFGLHETPDSLALRSSVAYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVVD--- 149

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  L  QI V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 150 -SKAPLTDQIEVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYFPG 208

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM +T ++N++GL  +N +++ARD       L K     Y+Y  
Sbjct: 209 GRPAFIAAMNAKAKALGMTDTHFENSTGLSSQN-VSSARD-------LVKMVNAAYQYPL 260

Query: 214 IRKFRY----------RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           IRKF            R     + N L+ N   +I   KTG+   +G  +V        P
Sbjct: 261 IRKFSTDRSYEVDTGKRTLAYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRP 320

Query: 263 IVAVVM 268
           IV V++
Sbjct: 321 IVMVLL 326


>gi|294340887|emb|CAZ89282.1| putative Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
           [Thiomonas sp. 3As]
          Length = 457

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 21/225 (9%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT 112
           S++V+D   +++   K  D  R  ASLTK+MT  +I +  Q     ++  I ++     T
Sbjct: 179 SALVVDEGTDRVLLSKNADTARPIASLTKLMTAAVILDAHQP----MDQVIEITDADIDT 234

Query: 113 QNPSKLYLKEKTYFTTEQGI-LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
              S   L+  T  T E+ + LAL++ S N  + A      G    F   M+ KA+ +GM
Sbjct: 235 LKWSSSRLRPGTKLTREELLKLALMS-SENRAAHALARNYPGGLAAFIPAMNAKARSLGM 293

Query: 172 QNTIYKNASGLHDKNQITTARDQAILG------ILLRK--NFPQYYKYFSIRKFRYRNRI 223
             T Y   +GL  +N+ +TA D A+L        L+R+    P+       R  ++RN  
Sbjct: 294 NTTRYVEPTGLSPQNE-STAHDLALLVKAAYHYPLIREFSTHPESEVEVGPRTLQFRN-- 350

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            T+H  + N+  +I   KTGY   +G  +V   +++   ++ V++
Sbjct: 351 -TDH-LVFNRGWDILLQKTGYINEAGHCLVLQTKFEGRRVIVVLL 393


>gi|78066908|ref|YP_369677.1| murein-DD-endopeptidase [Burkholderia sp. 383]
 gi|77967653|gb|ABB09033.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Burkholderia sp. 383]
          Length = 388

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 105/247 (42%), Gaps = 32/247 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N  +    K      P AS++K+MT  ++ +   
Sbjct: 117 VGQAFGLHDTPDALALRSSVAYVVDQNSGEPLFDKNSHAVVPIASISKLMTAMVVLD--- 173

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  +  QI V+      +  +   L   +  + E  +   +  S N  + A   + +G
Sbjct: 174 -SKTPMTDQIEVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYAG 232

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM +T ++N++GL   N +++ARD       L K     Y+Y  
Sbjct: 233 GRPAFIAAMNAKAKSLGMTDTHFENSTGLSSSN-VSSARD-------LVKMVNAAYQYPM 284

Query: 214 IRKFRY----------RNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           IR+F            RN +  + N L+  N   +I   KTG+   +G  +V        
Sbjct: 285 IRQFSTDRTYEVYTGKRNLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGK 344

Query: 262 PIVAVVM 268
           P+V V++
Sbjct: 345 PMVMVLL 351


>gi|330875216|gb|EGH09365.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 281

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 21/226 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  +++      +   P AS+TK+MT  I+ +  QS    ++  IPV+    +Q
Sbjct: 14  SAMVVDLQTDKVLYSSNPDVIVPIASVTKLMTAMIVLDAKQS----MDEVIPVN---ISQ 66

Query: 114 NPSKLYLKEKTYFTTEQG----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +  +    +E      +L  +  S N  + +      G    F + M+ KAK +
Sbjct: 67  TPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 126

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRII- 224
           GM++T Y   +GL   N ++TARD   L +  RK +P   +  +  +    FR    I+ 
Sbjct: 127 GMKHTAYVEPTGLSVYN-VSTARDLTKLVMAARK-YPLLSELSTTEQKTVTFRKPTYILG 184

Query: 225 -TNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            +N + L+ K + +I   KTG+T  +G  +V      + P+  V++
Sbjct: 185 FSNTDHLVRKENWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVIL 230


>gi|296136730|ref|YP_003643972.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thiomonas
           intermedia K12]
 gi|295796852|gb|ADG31642.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thiomonas
           intermedia K12]
          Length = 493

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 21/225 (9%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT 112
           S++V+D   +++   K  D  R  ASLTK+MT  +I +  Q     ++  I ++     T
Sbjct: 215 SALVVDEGTDRVLLSKNADTARPIASLTKLMTAAVILDAHQP----MDQVIEITDADIDT 270

Query: 113 QNPSKLYLKEKTYFTTEQGI-LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
              S   L+  T  T E+ + LAL++ S N  + A      G    F   M+ KA+ +GM
Sbjct: 271 LKWSSSRLRPGTKLTREELLKLALMS-SENRAAHALARNYPGGLAAFIPAMNAKARSLGM 329

Query: 172 QNTIYKNASGLHDKNQITTARDQAILG------ILLRK--NFPQYYKYFSIRKFRYRNRI 223
             T Y   +GL  +N+ +TA D A+L        L+R+    P+       R  ++RN  
Sbjct: 330 NTTRYVEPTGLSPQNE-STAHDLALLVKAAYHYPLIREFSTHPESEVEVGPRTLQFRN-- 386

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            T+H  + N+  +I   KTGY   +G  +V   +++   ++ V++
Sbjct: 387 -TDH-LVFNRGWDILLQKTGYINEAGHCLVLQTKFEGRRVIVVLL 429


>gi|322806098|emb|CBZ03665.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum H04402
           065]
          Length = 167

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 45/82 (54%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +  E + S K+ L  ++ +S+ A     S + L      T E  +  + 
Sbjct: 81  PASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAKKMGGSTMLLDVGEERTVEDLLKGIA 140

Query: 137 TRSANDVSTAFGEFISGSEKKF 158
             S ND + A GE+++GSE+ F
Sbjct: 141 IASGNDAAVAMGEYLAGSEEAF 162


>gi|295103732|emb|CBL01276.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 430

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 24/201 (11%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTT 128
           D+ +Y ASLTK+MT  ++ E    K L+    +P   T      QN +   +  +   T 
Sbjct: 61  DQQKYVASLTKLMTALLLVE--SGKDLNGEVTVPTDLTQEFKDIQNANGTTMGLRIGETV 118

Query: 129 EQGIL--ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
            +  L  A++  SAND ++     + GS   F   M+ +A ++G   T +  A GL D  
Sbjct: 119 RRIDLLNAMLIISANDAASVIAWDVGGSVVGFVQQMNARAAELGCTGTNFTCAHGLFDYG 178

Query: 187 QITTARDQAILGILLRKN--FPQYYKYFS-------IRKFRYRNRIITNHNKLLNKMHN- 236
            ++TA+D A +     +N  F Q     S       +RK  Y    I++ N L+N     
Sbjct: 179 NVSTAQDLAKIAAACAENQTFAQVAGTASYVLPATNLRKAEYT---ISSSNSLMNSESAN 235

Query: 237 ----IDGIKTGYTRNSGFNIV 253
               +  +K G+T  +G  IV
Sbjct: 236 YREYVKWVKGGFTTLAGRCIV 256


>gi|59800773|ref|YP_207485.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae FA
           1090]
 gi|194098057|ref|YP_002001105.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998517|ref|ZP_04718441.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           35/02]
 gi|240013642|ref|ZP_04720555.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           DGI18]
 gi|240016081|ref|ZP_04722621.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           FA6140]
 gi|240080223|ref|ZP_04724766.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           FA19]
 gi|240112436|ref|ZP_04726926.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           MS11]
 gi|240115176|ref|ZP_04729238.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           PID18]
 gi|240117460|ref|ZP_04731522.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           PID1]
 gi|240120712|ref|ZP_04733674.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           PID24-1]
 gi|240123016|ref|ZP_04735972.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           PID332]
 gi|240125268|ref|ZP_04738154.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           SK-92-679]
 gi|254493238|ref|ZP_05106409.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae 1291]
 gi|260441006|ref|ZP_05794822.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           DGI2]
 gi|268594377|ref|ZP_06128544.1| penicillin-binding protein 4 [Neisseria gonorrhoeae 35/02]
 gi|268596373|ref|ZP_06130540.1| penicillin-binding protein 4 [Neisseria gonorrhoeae FA19]
 gi|268598501|ref|ZP_06132668.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae MS11]
 gi|268600854|ref|ZP_06135021.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae PID18]
 gi|268603159|ref|ZP_06137326.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae PID1]
 gi|268681640|ref|ZP_06148502.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae PID332]
 gi|268683868|ref|ZP_06150730.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae SK-92-679]
 gi|291044337|ref|ZP_06570046.1| penicillin-binding protein 4 [Neisseria gonorrhoeae DGI2]
 gi|293399525|ref|ZP_06643678.1| D-alanyl-D-alanine endopeptidase (penicillin binding protein 7)
           [Neisseria gonorrhoeae F62]
 gi|59717668|gb|AAW89073.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae FA
           1090]
 gi|193933347|gb|ACF29171.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226512278|gb|EEH61623.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae 1291]
 gi|268547766|gb|EEZ43184.1| penicillin-binding protein 4 [Neisseria gonorrhoeae 35/02]
 gi|268550161|gb|EEZ45180.1| penicillin-binding protein 4 [Neisseria gonorrhoeae FA19]
 gi|268582632|gb|EEZ47308.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae MS11]
 gi|268584985|gb|EEZ49661.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae PID18]
 gi|268587290|gb|EEZ51966.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae PID1]
 gi|268621924|gb|EEZ54324.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae PID332]
 gi|268624152|gb|EEZ56552.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae SK-92-679]
 gi|291011231|gb|EFE03227.1| penicillin-binding protein 4 [Neisseria gonorrhoeae DGI2]
 gi|291610094|gb|EFF39216.1| D-alanyl-D-alanine endopeptidase (penicillin binding protein 7)
           [Neisseria gonorrhoeae F62]
 gi|317163793|gb|ADV07334.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 312

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 109/224 (48%), Gaps = 18/224 (8%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILA 134
           AS++K+M+  ++ +      L +N  + ++     +     S+L +   T  T ++ +  
Sbjct: 98  ASISKLMSAMVVLD----ANLDMNETVTITPDEIDRLKGTGSRLAIG--TALTRKELLHL 151

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A G    G    F   M+ KA+ +GM  + +   +GL+ +N ++TA+D 
Sbjct: 152 SLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLGMYGSRFYEPTGLNFQN-VSTAKDL 210

Query: 195 AILGILLRKNFPQY-----YKYFSIRKFRYRNRIITNHNKLLNK-MHNIDGIKTGYTRNS 248
           +++ +     +PQ        Y S++  +   +   N N L+ + M NI+  KTGY R +
Sbjct: 211 SLM-VNAAAQYPQIRTNSTSNYASVQT-KNGQQNYKNSNALVREGMWNIELQKTGYIREA 268

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           G ++V     ++ P+  V++  PTS  R   A ++ +  L++++
Sbjct: 269 GRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIESWMLQQRS 312


>gi|225026703|ref|ZP_03715895.1| hypothetical protein EUBHAL_00955 [Eubacterium hallii DSM 3353]
 gi|224955964|gb|EEG37173.1| hypothetical protein EUBHAL_00955 [Eubacterium hallii DSM 3353]
          Length = 209

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 46/76 (60%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D+ + PAS+TK+MTL +IFE L  K++ LN  + VS+ AA+   S+++L+     + +  
Sbjct: 129 DKEKPPASVTKVMTLLLIFEALSKKQITLNDTVTVSEHAASMGGSQVFLEPGETQSVDTM 188

Query: 132 ILALITRSANDVSTAF 147
           I  +   SAND   A+
Sbjct: 189 IKCIAVSSANDACVAY 204


>gi|5053120|gb|AAD38860.1|AF156692_1 penicillin-binding protein 4 [Neisseria gonorrhoeae]
          Length = 312

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 109/224 (48%), Gaps = 18/224 (8%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILA 134
           AS++K+M+  ++ +      L +N  + ++     +     S+L +   T  T ++ +  
Sbjct: 98  ASISKLMSAMVVLD----ANLDMNETVTITPDEIDRLKGTGSRLAIG--TALTRKELLHL 151

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A G    G    F   M+ KA+ +GM  + +   +GL+ +N ++TA+D 
Sbjct: 152 SLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLGMYGSRFYEPTGLNFQN-VSTAKDL 210

Query: 195 AILGILLRKNFPQY-----YKYFSIRKFRYRNRIITNHNKLLNK-MHNIDGIKTGYTRNS 248
           +++ +     +PQ        Y S++  +   +   N N L+ + M NI+  KTGY R +
Sbjct: 211 SLM-VNAAAQYPQIRTNSTSNYASVQT-KNGQQNYKNSNALVREGMWNIELQKTGYIREA 268

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           G ++V     ++ P+  V++  PTS  R   A ++ +  L++++
Sbjct: 269 GRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIESWILQQRS 312


>gi|83719638|ref|YP_442398.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis E264]
 gi|83653463|gb|ABC37526.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis E264]
          Length = 415

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 101/246 (41%), Gaps = 31/246 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N  +    K      P AS+TK+MT  ++ +   
Sbjct: 145 VGQAFGLHETPDSLALRSSVAYVVDQNTAEPLFDKNSRAVVPIASITKLMTAMVVLD--- 201

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  L  QI V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 202 -SKAPLTEQIDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPG 260

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM +T ++N++GL  +N +++ARD       L K     Y+Y  
Sbjct: 261 GRPAFIAAMNAKAKSLGMNDTHFENSTGLSSQN-VSSARD-------LVKMVNAAYQYPL 312

Query: 214 IRKFRYRNRIITNHNKLL-----------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           IRKF        N  K +           N   +I   KTG+   +G  +V        P
Sbjct: 313 IRKFSTDRSYEVNTGKRMLAYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRP 372

Query: 263 IVAVVM 268
           IV V++
Sbjct: 373 IVMVLL 378


>gi|240127722|ref|ZP_04740383.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268686110|ref|ZP_06152972.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae SK-93-1035]
 gi|268626394|gb|EEZ58794.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae SK-93-1035]
          Length = 312

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 109/224 (48%), Gaps = 18/224 (8%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILA 134
           AS++K+M+  ++ +      L +N  + ++     +     S+L +   T  T ++ +  
Sbjct: 98  ASISKLMSAMVVLD----ANLDMNETVTITPDEIDRLKGTGSRLAIG--TALTRKELLHL 151

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A G    G    F   M+ KA+ +GM  + +   +GL+ +N ++TA+D 
Sbjct: 152 SLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLGMYGSRFYEPTGLNFQN-VSTAKDL 210

Query: 195 AILGILLRKNFPQY-----YKYFSIRKFRYRNRIITNHNKLLNK-MHNIDGIKTGYTRNS 248
           +++ +     +PQ        Y S++  +   +   N N L+ + M NI+  KTGY R +
Sbjct: 211 SLM-VNAAAQYPQIRTNSTSNYASVQT-KNGQQNYKNSNALVREGMWNIELQKTGYIREA 268

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           G ++V     ++ P+  V++  PTS  R   A ++ +  L++++
Sbjct: 269 GRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIESWMLQQRS 312


>gi|258510359|ref|YP_003183793.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257477085|gb|ACV57404.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 402

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 34/210 (16%)

Query: 69  FKQDEPRYP---ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTY 125
           F    P+ P   AS+TK+MT Y++   LQ   L L  Q P      T +  K+Y ++K  
Sbjct: 69  FGSSGPQVPVPIASVTKVMTAYLV---LQKHPLQLGQQGP--SITITPDDVKVYERDKAL 123

Query: 126 ------------FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
                        T  Q +  L+  S N++ T   ++  GS + F   M+  AK++GM  
Sbjct: 124 GQSVVKVAAGEQITEYQALEGLLLPSGNNMGTLLAKWCDGSVQAFVQEMNATAKRLGMTE 183

Query: 174 TIYKNASGLHDKNQITTARDQ------AILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           T Y + +G    +Q + A DQ      A+   + R+   +      +    Y    +  H
Sbjct: 184 THYADPTGYSPASQ-SDAVDQMKLFALAMQNPVFRQIVGEAQAELPVAGLVYNVDSVVGH 242

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
             ++       G KTG T  +G   V + R
Sbjct: 243 GTII-------GGKTGSTLEAGGCFVFAAR 265


>gi|329119331|ref|ZP_08248017.1| D-alanyl-D-alanine carboxypeptidase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464476|gb|EGF10775.1| D-alanyl-D-alanine carboxypeptidase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 314

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 103/223 (46%), Gaps = 17/223 (7%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILA 134
           AS++K+M+  +  +     +L++N  I +++    +     S+L +   T  T  Q +  
Sbjct: 98  ASISKLMSAMVTLD----ARLNMNEVITITEDEIDRIKGTGSRLSIG--TQLTRAQLLHL 151

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A G    G    F   M+ KA+ +GM ++ +   +GL  +N ++TA D 
Sbjct: 152 SLMSSENRATHALGRTYPGGMAAFVAAMNAKAQSLGMADSRFYEPTGLDYRN-VSTASDL 210

Query: 195 AILGILLRKNFPQYYK-----YFSIRKFRYRNRIITNHNKLLNK-MHNIDGIKTGYTRNS 248
           + + +     +PQ        Y S+     R +   N N L+ +   +I+  KTGY R S
Sbjct: 211 SKM-VAAAAKYPQIRSNSTSTYGSVYTSAGRQQNYKNSNALVREGTWDIELQKTGYIRES 269

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
           G ++V   R   +P+  V++  PT+  R   A  + +  L ++
Sbjct: 270 GRSMVVKARIGSEPVTIVLLNSPTTTTRVNDARSIQSWMLTQR 312


>gi|325200563|gb|ADY96018.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           meningitidis H44/76]
          Length = 272

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 109/224 (48%), Gaps = 18/224 (8%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILA 134
           AS++K+M+  ++ +      L +N  + ++     +     S+L +   T  T ++ +  
Sbjct: 58  ASISKLMSAMVVLD----ANLDMNETVTITPDEIDRLKGTGSRLAIG--TALTRKELLHL 111

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A G    G    F   M+ KA+ +GM  + +   +GL+ +N ++TA+D 
Sbjct: 112 SLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLGMYGSRFYEPTGLNFQN-VSTAKDL 170

Query: 195 AILGILLRKNFPQY-----YKYFSIRKFRYRNRIITNHNKLLNK-MHNIDGIKTGYTRNS 248
           +++ +     +PQ        Y S++  +   +   N N L+ + M NI+  KTGY R +
Sbjct: 171 SLM-VNAAAQYPQIRTNSTSNYASVQT-KNGQQNYKNSNALVREGMWNIELQKTGYIREA 228

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           G ++V     ++ P+  V++  PTS  R   A ++ +  L++++
Sbjct: 229 GRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIESWMLQQRS 272


>gi|330967602|gb|EGH67862.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 311

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 21/226 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  +++      +   P AS+TK+MT  I+ +  QS    ++  IPV+    +Q
Sbjct: 44  SAMVVDLQTDKVLYSSNPDVIVPIASVTKLMTAMIVLDAKQS----MDEVIPVN---ISQ 96

Query: 114 NPSKLYLKEKTYFTTEQG----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +  +    +E      +L  +  S N  + +      G    F + M+ KAK +
Sbjct: 97  TPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 156

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRII- 224
           GM++T Y   +GL   N ++TARD   L +  RK +P   +  +  +    FR    I+ 
Sbjct: 157 GMKHTAYVEPTGLSVYN-VSTARDLTKLVMAARK-YPLLSELSTTEQKTVTFRKPTYILG 214

Query: 225 -TNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            +N + L+ K + +I   KTG+T  +G  +V      + P+  V++
Sbjct: 215 FSNTDHLVRKENWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVIL 260


>gi|28869869|ref|NP_792488.1| penicillin-binding protein 7 [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213969996|ref|ZP_03398129.1| penicillin-binding protein 7 [Pseudomonas syringae pv. tomato T1]
 gi|302060754|ref|ZP_07252295.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. tomato
           K40]
 gi|302132778|ref|ZP_07258768.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28853114|gb|AAO56183.1| penicillin-binding protein 7 [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213925321|gb|EEB58883.1| penicillin-binding protein 7 [Pseudomonas syringae pv. tomato T1]
          Length = 311

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 21/226 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  +++      +   P AS+TK+MT  I+ +  QS    ++  IPV+    +Q
Sbjct: 44  SAMVVDLQTDKVLYSSNPDVIVPIASVTKLMTAMIVLDAKQS----MDEVIPVN---ISQ 96

Query: 114 NPSKLYLKEKTYFTTEQG----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +  +    +E      +L  +  S N  + +      G    F + M+ KAK +
Sbjct: 97  TPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 156

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRII- 224
           GM++T Y   +GL   N ++TARD   L +  RK +P   +  +  +    FR    I+ 
Sbjct: 157 GMKHTAYVEPTGLSVYN-VSTARDLTKLVMAARK-YPLLSELSTTEQKTVTFRKPTYILG 214

Query: 225 -TNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            +N + L+ K + +I   KTG+T  +G  +V      + P+  V++
Sbjct: 215 FSNTDHLVRKENWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVIL 260


>gi|294788601|ref|ZP_06753843.1| D-alanyl-D-alanine carboxypeptidase family protein [Simonsiella
           muelleri ATCC 29453]
 gi|294483478|gb|EFG31163.1| D-alanyl-D-alanine carboxypeptidase family protein [Simonsiella
           muelleri ATCC 29453]
          Length = 292

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 112/241 (46%), Gaps = 18/241 (7%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V++ N  ++   K  D  R  AS++K+M+  ++ +     KL++   I +++    +
Sbjct: 53  SALVMNANTGKILYQKNVDTVRSIASISKLMSAMVLLD----AKLNMYEDITITEDEIDR 108

Query: 114 ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S+L +   T  T  + +   +  S N    A      G    F   M+ KA+ +G
Sbjct: 109 LKGTGSRLSIG--TTLTRGELLHLGLMSSENRAIHALARTYPGGMGAFVAAMNAKAQSLG 166

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY-----YKYFSIRKFRYRNRIIT 225
           M  + +   +GL  +N ++TARD +++ +     +PQ        Y  +     + +   
Sbjct: 167 MNKSRFFEPTGLDPRN-VSTARDLSVM-VRAASKYPQIRSLTTSNYGQVYTSAGKTQTYK 224

Query: 226 NHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   +I   KTGY + +G ++V   R  + P+V VV+G  TS  R + A EL 
Sbjct: 225 NTNALVREGDWDISLQKTGYIKEAGRSMVLQARLGNQPVVIVVLGSSTSSSRVRDARELS 284

Query: 285 T 285
           T
Sbjct: 285 T 285


>gi|167563365|ref|ZP_02356281.1| family S11 unassigned peptidase [Burkholderia oklahomensis EO147]
          Length = 278

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 104/246 (42%), Gaps = 31/246 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N ++    K      P AS+TK+MT  ++ +   
Sbjct: 8   VGQAFGLHETPDSLALRSSVAYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVVD--- 64

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  L  QI V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 65  -SKAPLTDQIEVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYFPG 123

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM +T ++N++GL  +N +++ARD       L K     Y+Y  
Sbjct: 124 GRPAFIAAMNAKAKALGMTDTHFENSTGLSSQN-VSSARD-------LVKMVNAAYQYPL 175

Query: 214 IRKFRY----------RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           IRKF            R     + N L+ N   +I   KTG+   +G  +V        P
Sbjct: 176 IRKFSTDRSYEVDTGKRTLAYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRP 235

Query: 263 IVAVVM 268
           IV V++
Sbjct: 236 IVMVLL 241


>gi|262201714|ref|YP_003272922.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Gordonia
           bronchialis DSM 43247]
 gi|262085061|gb|ACY21029.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Gordonia
           bronchialis DSM 43247]
          Length = 411

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 90/211 (42%), Gaps = 28/211 (13%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQI-PVSKTAATQN 114
           ++ DV+   +   K    RY PAS     T+ ++   +  + LHL+  + P  +  +T+ 
Sbjct: 95  LIADVDSGHVIAAKDPHGRYRPAS-----TIKVLLALVALRDLHLDDVVEPTVEDWSTEG 149

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S   +    ++TT   +  L+  S ND + A    + G+E   A  M+  A  +G  +T
Sbjct: 150 DS-CGMGPGGHYTTRDLLTGLLMVSGNDCANALSRSLGGTEATLAK-MNELAASLGAHDT 207

Query: 175 IYKNASGLHDKNQITTARDQAI-LGILLRKNFPQYYKYFSIRKFRYRN------------ 221
              + SGL      T+  D A+     LR N   + +   +R FR+ +            
Sbjct: 208 RAASPSGLDAAGMSTSPYDMALFFRAALRDN--TFRELIGLRTFRFPDYPPRADVPGDKP 265

Query: 222 ----RIITNHNKLLNKMHNIDGIKTGYTRNS 248
                + T+++ LL     + G KTGYT ++
Sbjct: 266 HPAYDMYTSNHLLLEDYPGMIGGKTGYTDDA 296


>gi|227515412|ref|ZP_03945461.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus fermentum
           ATCC 14931]
 gi|227086216|gb|EEI21528.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus fermentum
           ATCC 14931]
          Length = 417

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 121/283 (42%), Gaps = 49/283 (17%)

Query: 30  LMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMT 85
           L+  + F +++  S  +  +A       ++I ID    Q+   K    RYP AS+ K+ T
Sbjct: 12  LLVVVTFTTVLATSAGAVANASSTVDARAAITIDAETGQVLYEKNATKRYPIASVIKIRT 71

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAA-TQNP---SKLYLKEKTYFTTEQGILALITRSAN 141
           L +I + ++  KL  + +I +SK  A   N    S + L E   +T +  + +++  SA+
Sbjct: 72  LAVIEQDIEQGKLKWDQKIKISKEVAKVANDWRFSNVQLNEGESYTVKSLVESMMIVSAD 131

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD---------------KN 186
             + A     +GS   F   M   AK+ G+ +    N  GL +               +N
Sbjct: 132 GSAEALALASAGSTAAFNQKMQAVAKEAGVTDAKIYNMIGLANGDLGEMRLKNVSKKAEN 191

Query: 187 QITTARDQAILGILLRKNFP------------------QYYKYFSIRKFRYRNRIITNHN 228
           Q++ A+D A +   L + +P                  Q Y+  +I     +N   + H 
Sbjct: 192 QLS-AKDVAKIARYLVEKYPSVLEITKQKFVNFQVSDSQQYEMVNINSMLPQNAAASTHG 250

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           +       +DG+KTG T +SG+  V +  +    ++ VV+ +P
Sbjct: 251 E-------VDGLKTGMTDSSGYCFVGTGTFNGRRLITVVLKVP 286


>gi|237732182|ref|ZP_04562663.1| D-alanyl-D-alanine endopeptidase [Citrobacter sp. 30_2]
 gi|226907721|gb|EEH93639.1| D-alanyl-D-alanine endopeptidase [Citrobacter sp. 30_2]
          Length = 314

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 103/233 (44%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS+TK+MT  ++ +     +L L+ ++   K   +Q
Sbjct: 41  SAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD----ARLPLDEKL---KVDISQ 93

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G    F   M+ KAK 
Sbjct: 94  TPEMKGIYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYNAFIKAMNAKAKA 152

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------ 216
           +GM  T +   +GL   N ++TARD   L ++  K +P   +  + R+            
Sbjct: 153 LGMTQTRFVEPTGLSIHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFANPAYTL 210

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 211 PFRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 257


>gi|254445424|ref|ZP_05058900.1| FG-GAP repeat domain protein [Verrucomicrobiae bacterium DG1235]
 gi|198259732|gb|EDY84040.1| FG-GAP repeat domain protein [Verrucomicrobiae bacterium DG1235]
          Length = 1459

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 30/169 (17%)

Query: 73   EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL------------ 120
            E R+ AS+TK MTL +  E L++ +  L   + VS+ A T   S+L              
Sbjct: 1066 EERHAASVTKCMTLLLAVEALENGQTELTRMVGVSELAGTNKGSRLLTYNDFGSEIKDDN 1125

Query: 121  KEKTYFTTEQGIL-------ALITRSANDVSTA----FGEFISGSEKKFAILMSNKAKKI 169
             +  YF     ++       A++  S N  S A      E ++G   +F I+M++KA ++
Sbjct: 1126 GDPIYFIQPGDLMPLRLLIAAMMNESCNRSSIAIAQHIAEVVTGDPDRFIIMMNDKAAEL 1185

Query: 170  GMQNTIYKNASGLHDKNQITTARDQAILGILLR-KNFPQYYKYFSIRKF 217
             M +T++   +G      +T  R Q ++ +LL     PQ+ ++  I ++
Sbjct: 1186 EMHDTVFGQPAG----GMVT--RPQDLITLLLEGSKHPQFVEFGGIARY 1228


>gi|257791061|ref|YP_003181667.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Eggerthella
           lenta DSM 2243]
 gi|317488221|ref|ZP_07946790.1| D-alanyl-D-alanine carboxypeptidase [Eggerthella sp. 1_3_56FAA]
 gi|257474958|gb|ACV55278.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Eggerthella
           lenta DSM 2243]
 gi|316912663|gb|EFV34203.1| D-alanyl-D-alanine carboxypeptidase [Eggerthella sp. 1_3_56FAA]
          Length = 349

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 106/255 (41%), Gaps = 33/255 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
            + ++D +     G   D+    ASLTK+MT  +  ++L +     +T I V+  AA+  
Sbjct: 60  CAALMDEDGTLWFGRNADDAAQIASLTKIMTAIVAADWLDA-----STMIEVTPEAASVG 114

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAF--------------GEFISGSEKKFAI 160
            S   L +    T +  + AL+T S ND ++A               G      E  F  
Sbjct: 115 ESSAGLAQGDSMTFDDALKALLTASGNDAASAIAQAAGARMLAQEGSGGDAYACEAAFVE 174

Query: 161 LMSNKAKKIGMQNTIYKNASGLH----DKNQITTARD-----QAILGI-LLRKNFPQYYK 210
            M+ KA ++G++N+ + N  GL      + Q + A D     +A + I L+R N      
Sbjct: 175 AMNAKAAELGLENSFFANPHGLDFDAFAQGQYSCAADVATMLRAAMQIDLVRANIGFSQA 234

Query: 211 YFSI-RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVM 268
             ++ R        + N + LL         KTGYT  +G    +++   D     AVV+
Sbjct: 235 DITVQRDGAPVTLALENTDALLGSYPGACAAKTGYTLAAGPCAASAVNRGDGHKYYAVVL 294

Query: 269 GMPTSQER--DQKAL 281
           G  +  +R  D  AL
Sbjct: 295 GSSSKPQRFVDSAAL 309


>gi|167581319|ref|ZP_02374193.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis TXDOH]
 gi|257138600|ref|ZP_05586862.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis E264]
          Length = 364

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 101/246 (41%), Gaps = 31/246 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N  +    K      P AS+TK+MT  ++ +   
Sbjct: 94  VGQAFGLHETPDSLALRSSVAYVVDQNTAEPLFDKNSRAVVPIASITKLMTAMVVLD--- 150

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  L  QI V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 151 -SKAPLTEQIDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPG 209

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM +T ++N++GL  +N +++ARD       L K     Y+Y  
Sbjct: 210 GRPAFIAAMNAKAKSLGMNDTHFENSTGLSSQN-VSSARD-------LVKMVNAAYQYPL 261

Query: 214 IRKFRYRNRIITNHNKLL-----------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           IRKF        N  K +           N   +I   KTG+   +G  +V        P
Sbjct: 262 IRKFSTDRSYEVNTGKRMLAYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRP 321

Query: 263 IVAVVM 268
           IV V++
Sbjct: 322 IVMVLL 327


>gi|145299285|ref|YP_001142126.1| D-alanyl-D-alanine carboxypeptidase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852057|gb|ABO90378.1| D-alanyl-D-alanine carboxypeptidase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 251

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 121/248 (48%), Gaps = 24/248 (9%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQ--SKKLHLNTQIPVS 107
           A P+   ++ + N N++           AS+TK+MT  ++ +  Q  S+ L + T   V 
Sbjct: 3   ANPRTGEVLSERNANRVMPI--------ASITKLMTALVVLDANQRLSETLTV-TMADVD 53

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
           +   T   S+L +  +     +   +AL++ S N  ++A      G ++ F   M+ KA 
Sbjct: 54  RLKGTG--SRLAVGSR-LSRADMLHIALMS-SENRAASALARHYPGGQRAFIEAMNAKAS 109

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RII- 224
            +GM +T + +++GL+ +N +++A D A L +     +P   +Y +  +   RN  R + 
Sbjct: 110 MLGMWSTQFADSTGLNPRN-VSSAHDLAKL-VAAASAYPLIRQYSATEQRMVRNGKRQLH 167

Query: 225 -TNHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER--DQKA 280
             N N+L+ +   +  + KTGY R +G  +V + +   +P++ V++   T   R  D K 
Sbjct: 168 YLNSNRLVREGSWLVTLSKTGYIREAGRCLVMATQINREPVILVLLNADTPNARVADAKR 227

Query: 281 LELITSFL 288
           ++++   L
Sbjct: 228 IKVLAGEL 235


>gi|167619401|ref|ZP_02388032.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis Bt4]
          Length = 364

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 101/246 (41%), Gaps = 31/246 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N  +    K      P AS+TK+MT  ++ +   
Sbjct: 94  VGQAFGLHETPDSLALRSSVAYVVDQNTAEPLFDKNSRAVVPIASITKLMTAMVVLD--- 150

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  L  QI V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 151 -SKAPLTEQIDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPG 209

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM +T ++N++GL  +N +++ARD       L K     Y+Y  
Sbjct: 210 GRTAFIAAMNAKAKSLGMNDTHFENSTGLSSQN-VSSARD-------LVKMVNAAYQYPL 261

Query: 214 IRKFRYRNRIITNHNKLL-----------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           IRKF        N  K +           N   +I   KTG+   +G  +V        P
Sbjct: 262 IRKFSTDRSYEVNTGKRMLAYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRP 321

Query: 263 IVAVVM 268
           IV V++
Sbjct: 322 IVMVLL 327


>gi|330817668|ref|YP_004361373.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           gladioli BSR3]
 gi|327370061|gb|AEA61417.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           gladioli BSR3]
          Length = 383

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 106/246 (43%), Gaps = 31/246 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N ++    K      P AS++K+MT  ++ +   
Sbjct: 113 VGQAFGLHDTPDALALRSSVAYVVDQNSSEPLFDKNSRAVVPIASISKLMTAMVVLD--- 169

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  L+ QI V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 170 -SKASLDEQITVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPG 228

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM +T ++N++GL   N +++ARD       L K     Y+Y  
Sbjct: 229 GRPAFIAAMNAKAKSLGMTDTHFENSTGLTSLN-VSSARD-------LVKMIDAAYQYPL 280

Query: 214 IRKFRY----------RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           IR+F            R+ +  + N L+ N   +I   KTG+   +G  +V        P
Sbjct: 281 IRRFSTDRTYTVFTGKRSLVYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRP 340

Query: 263 IVAVVM 268
           IV V++
Sbjct: 341 IVMVLL 346


>gi|145505585|ref|XP_001438759.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124405931|emb|CAK71362.1| unnamed protein product [Paramecium tetraurelia]
          Length = 360

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 108/244 (44%), Gaps = 21/244 (8%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTY 125
           +TG+ Q++ R  AS+TK++T  I   +L   KL +N      K + T   S   LK  + 
Sbjct: 123 ITGYNQNKCRQIASITKIVTCIIENAFLFQIKL-INQTKQAQKISGT---SAGLLKGDSI 178

Query: 126 FTTEQGILALITRSANDVSTAFG---EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
           F  +  +  L+  S ND +       +  S     F   M+   + +G+ NT + N  GL
Sbjct: 179 FLRDL-LYGLMLPSGNDAAVTLSYNFQLYSLENDHFLKEMNRFVQALGLSNTQFSNVHGL 237

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYK------YFSIRKFRYRNR----IITNHNKLLN 232
            ++N  +TA D         +N  Q+ K      YF     + +N        N NKLL 
Sbjct: 238 CNENNFSTAYDVGKFTYESLQN-EQFQKIVRTQSYFCETPNQLQNTSRELYWENTNKLLQ 296

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +     G+KTG T+ +G ++V   +   +  + V++   +S+ R   AL L+    ++ T
Sbjct: 297 Q--GFKGVKTGITKEAGPSVVEYFQDSTNSYIIVLLNCSSSENRWTDALRLLQWIQKQDT 354

Query: 293 LKHQ 296
           L  Q
Sbjct: 355 LIKQ 358


>gi|218460577|ref|ZP_03500668.1| putative D-alanyl-D-alanine carboxypeptidase (penicillin-binding
           protein) [Rhizobium etli Kim 5]
          Length = 219

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 38/56 (67%)

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +DGIKTGYT  SGFN+V+++R  +  +V VV+G  T++ RD K   L+  +L + +
Sbjct: 1   MDGIKTGYTNASGFNLVSAVRDGNRRVVGVVLGGRTARSRDAKMAALLDRYLGRAS 56


>gi|53723811|ref|YP_103337.1| D-alanyl-D-alanine endopeptidase [Burkholderia mallei ATCC 23344]
 gi|76810679|ref|YP_334127.1| peptidase [Burkholderia pseudomallei 1710b]
 gi|52427234|gb|AAU47827.1| D-alanyl-D-alanine endopeptidase, putative [Burkholderia mallei
           ATCC 23344]
 gi|76580132|gb|ABA49607.1| family S11 unassigned peptidase [Burkholderia pseudomallei 1710b]
          Length = 394

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 102/246 (41%), Gaps = 31/246 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N ++    K      P AS+TK+MT  ++ +   
Sbjct: 124 VGQAFGLHETPDSLALRSSVAYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVLD--- 180

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  L  QI V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 181 -SKSPLTDQIDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPG 239

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM +T ++N++GL  +N +++ARD       L K     Y+Y  
Sbjct: 240 GRPAFIAAMNAKAKSLGMTDTHFENSTGLSSQN-VSSARD-------LVKMVNAAYQYPL 291

Query: 214 IRKFRYRNRIITNHNK-----------LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           IRKF        N  K           + N   +I   KTG+   +G  +V        P
Sbjct: 292 IRKFSTDRSYEVNTGKRTLAYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRP 351

Query: 263 IVAVVM 268
           IV V++
Sbjct: 352 IVMVLL 357


>gi|188534373|ref|YP_001908170.1| D-alanyl-D-alanine endopeptidase [Erwinia tasmaniensis Et1/99]
 gi|188029415|emb|CAO97292.1| Penicillin-binding protein 7 (D-alanyl-D-alanine-endopeptidase)
           [Erwinia tasmaniensis Et1/99]
          Length = 316

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 104/230 (45%), Gaps = 29/230 (12%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS---KTA 110
           S++++D+N N++      D  R  AS+TK+MT+ +           L+  +P+    K  
Sbjct: 46  SAMIVDLNSNKVIYESHPDRVRPIASITKLMTVMVA----------LDAHLPLDEMLKVD 95

Query: 111 ATQNPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
            +  P    +  +    +E       +LAL++ S N  + +      G    F   M+ K
Sbjct: 96  VSHTPEMRGVYSRVRLNSEISRKNMMLLALMS-SENRAAASLAHHYPGGYDAFIRAMNAK 154

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK----YFSIRKFRYRN 221
           A+ +GM +T Y   +GL  +N ++TARD + L +L  K +P   +    +  +  FR  N
Sbjct: 155 ARALGMSHTRYVEPTGLSIEN-VSTARDLSKL-LLATKRYPLIGQLSTTHEDMASFRSPN 212

Query: 222 RIIT--NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +   N N L+ +   NI   KTGYT  +G  +V        P+  VV+
Sbjct: 213 YTLPFRNTNHLVYRPDWNIQLTKTGYTDEAGHCLVMRTVINQRPVSLVVL 262


>gi|221632531|ref|YP_002521752.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermomicrobium roseum
           DSM 5159]
 gi|221157198|gb|ACM06325.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermomicrobium roseum
           DSM 5159]
          Length = 549

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 16/229 (6%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEY 92
           I+ L+I +   A  L        I++D    Q+   +   +P   ASLTK+MT  +  E 
Sbjct: 14  IVALAIPIPVRADSLPEVVAQHWIIMDAETGQIVAERAARQPVAIASLTKVMTAVVALE- 72

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
               +  L+  + +         S   L+     T    +  L+ RS ND + A    + 
Sbjct: 73  ----RGALDQPVTIVPEDLIGE-SSAGLRAGQVVTLRTLLYGLLLRSGNDAAMAIARAVG 127

Query: 153 GSE--------KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
           GS         ++F   M+ KA ++G+Q T ++N  GL +   +++A D A L  +   +
Sbjct: 128 GSPDAEDPAARQRFVTWMNAKAVELGLQATSFRNPHGLDEPGHVSSAYDLARLTRVALAD 187

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            P + + F    +        + N+L  +   I G KTG+T  +G  ++
Sbjct: 188 -PVFVEIFGAASYHGEGFSWRHTNRLPERYPGIIGGKTGWTDEAGLCLI 235


>gi|15676647|ref|NP_273791.1| penicillin-binding protein 4 [Neisseria meningitidis MC58]
 gi|7225978|gb|AAF41162.1| penicillin-binding protein 4 [Neisseria meningitidis MC58]
 gi|325140094|gb|EGC62623.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           meningitidis CU385]
          Length = 312

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 109/224 (48%), Gaps = 18/224 (8%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILA 134
           AS++K+M+  ++ +      L +N  + ++     +     S+L +   T  T ++ +  
Sbjct: 98  ASISKLMSAMVVLD----ANLDMNETVTITPDEIDRIKGTGSRLAIG--TALTRKKLLHL 151

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A G    G    F   M+ KA+ +GM  + +   +GL+ +N ++TA+D 
Sbjct: 152 SLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLGMYGSRFYEPTGLNFQN-VSTAKDL 210

Query: 195 AILGILLRKNFPQY-----YKYFSIRKFRYRNRIITNHNKLLNK-MHNIDGIKTGYTRNS 248
           +++ +     +PQ        Y S++  +   +   N N L+ + M NI+  KTGY R +
Sbjct: 211 SLM-VNAAAQYPQIRTNSTSNYASVQT-KNGQQNYKNSNALVREGMWNIELQKTGYIREA 268

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           G ++V     ++ P+  V++  PTS  R   A ++ +  L++++
Sbjct: 269 GRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIESWMLQQRS 312


>gi|126439318|ref|YP_001059634.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 668]
 gi|126218811|gb|ABN82317.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           668]
          Length = 369

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 102/246 (41%), Gaps = 31/246 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N ++    K      P AS+TK+MT  ++ +   
Sbjct: 99  VGQAFGLHETPDSLALRSSVAYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVLD--- 155

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  L  QI V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 156 -SKSPLTDQIDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPG 214

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM +T ++N++GL  +N +++ARD       L K     Y+Y  
Sbjct: 215 GRPAFIAAMNAKAKSLGMTDTHFENSTGLSSQN-VSSARD-------LVKMVNAAYQYPL 266

Query: 214 IRKFRYRNRIITNHNK-----------LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           IRKF        N  K           + N   +I   KTG+   +G  +V        P
Sbjct: 267 IRKFSTDRSYEVNTGKRTLAYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRP 326

Query: 263 IVAVVM 268
           IV V++
Sbjct: 327 IVMVLL 332


>gi|225023959|ref|ZP_03713151.1| hypothetical protein EIKCOROL_00826 [Eikenella corrodens ATCC
           23834]
 gi|224942984|gb|EEG24193.1| hypothetical protein EIKCOROL_00826 [Eikenella corrodens ATCC
           23834]
          Length = 314

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 27/226 (11%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLN-TQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
           D+ R  AS++K+M   ++ +  Q+    L  T+  + +   T +     L   T  T  +
Sbjct: 93  DQVRPIASISKLMAAMVVLDARQNMNETLEITEAEIDRLKGTGS----RLSVGTTLTRRE 148

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +   +  S N    A      G    F   M+ KA+ +GMQ T + + +GL  +N ++T
Sbjct: 149 MLHLGLMSSENRAIHALARNYPGGLPAFMSAMNRKAQSLGMQQTRFYDPTGLDFRN-VST 207

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRN---------RI--ITNHNKLLNK-MHNID 238
           ARD   L +++R      ++Y  IR+F   N         R+    N N L+ +   NI 
Sbjct: 208 ARD---LSLMVRA----AHEYPLIRQFSTSNSGSAQTSNGRVQQYRNSNALVREGTWNIS 260

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER--DQKALE 282
             KTGY R SG ++V     +  P++ V++  P+   R  D +A++
Sbjct: 261 LQKTGYIRESGRSMVLYANVQRQPLIIVLLNSPSPTTRVNDARAIQ 306


>gi|126455216|ref|YP_001066916.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106a]
 gi|134277355|ref|ZP_01764070.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 305]
 gi|167824963|ref|ZP_02456434.1| family S11 unassigned peptidase [Burkholderia pseudomallei 9]
 gi|217420719|ref|ZP_03452224.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           576]
 gi|226195535|ref|ZP_03791123.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|242314261|ref|ZP_04813277.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106b]
 gi|254184359|ref|ZP_04890949.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1655]
 gi|254195825|ref|ZP_04902251.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei S13]
 gi|254200295|ref|ZP_04906661.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei FMH]
 gi|254258254|ref|ZP_04949308.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1710a]
 gi|254297022|ref|ZP_04964475.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 406e]
 gi|126228858|gb|ABN92398.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106a]
 gi|134251005|gb|EBA51084.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 305]
 gi|147749891|gb|EDK56965.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei FMH]
 gi|157807411|gb|EDO84581.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 406e]
 gi|169652570|gb|EDS85263.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei S13]
 gi|184214890|gb|EDU11933.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1655]
 gi|217396131|gb|EEC36148.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           576]
 gi|225932495|gb|EEH28494.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|242137500|gb|EES23902.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106b]
 gi|254216943|gb|EET06327.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1710a]
          Length = 369

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 102/246 (41%), Gaps = 31/246 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N ++    K      P AS+TK+MT  ++ +   
Sbjct: 99  VGQAFGLHETPDSLALRSSVAYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVLD--- 155

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  L  QI V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 156 -SKSPLTDQIDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPG 214

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM +T ++N++GL  +N +++ARD       L K     Y+Y  
Sbjct: 215 GRPAFIAAMNAKAKSLGMTDTHFENSTGLSSQN-VSSARD-------LVKMVNAAYQYPL 266

Query: 214 IRKFRYRNRIITNHNK-----------LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           IRKF        N  K           + N   +I   KTG+   +G  +V        P
Sbjct: 267 IRKFSTDRSYEVNTGKRTLAYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRP 326

Query: 263 IVAVVM 268
           IV V++
Sbjct: 327 IVMVLL 332


>gi|255522654|ref|ZP_05389891.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria
           monocytogenes FSL J1-175]
          Length = 168

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 73/144 (50%), Gaps = 18/144 (12%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP---------ASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           K  +I +  N   +   +  EP Y          ASLTK+MT +++ E + + +L  + +
Sbjct: 23  KQPNIYLSANAAAVYSVENGEPLYEENADKVMPIASLTKLMTAFLVLEAVDNNELSWDEK 82

Query: 104 IPVSKTAATQNPSKLYL---KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
           + + +     +PS + L    +K  ++      A++T SAND +   G+ + G+   F  
Sbjct: 83  LDLVR---LDDPSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLGDRLDGA--NFPK 137

Query: 161 LMSNKAKKIGMQN-TIYKNASGLH 183
            M+N+AKK+GM + T + +ASGL 
Sbjct: 138 EMNNQAKKLGMSSKTTFVSASGLD 161


>gi|167919694|ref|ZP_02506785.1| family S11 unassigned peptidase [Burkholderia pseudomallei BCC215]
          Length = 362

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 102/246 (41%), Gaps = 31/246 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N ++    K      P AS+TK+MT  ++ +   
Sbjct: 92  VGQAFGLHETPDSLALRSSVAYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVLD--- 148

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  L  QI V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 149 -SKSPLTDQIDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPG 207

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM +T ++N++GL  +N +++ARD       L K     Y+Y  
Sbjct: 208 GRPAFIAAMNAKAKSLGMTDTHFENSTGLSSQN-VSSARD-------LVKMVNAAYQYPL 259

Query: 214 IRKFRYRNRIITNHNK-----------LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           IRKF        N  K           + N   +I   KTG+   +G  +V        P
Sbjct: 260 IRKFSTDRSYEVNTGKRTLAYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRP 319

Query: 263 IVAVVM 268
           IV V++
Sbjct: 320 IVMVLL 325


>gi|227530146|ref|ZP_03960195.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus vaginalis
           ATCC 49540]
 gi|227349929|gb|EEJ40220.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus vaginalis
           ATCC 49540]
          Length = 415

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 130/304 (42%), Gaps = 48/304 (15%)

Query: 28  IQLMGKILFLSIIMISMASE---------LHAKPKYSSIVIDVNKNQMTGFKQDEPRYP- 77
           I  +  IL ++++ +  A+          L+A+  Y+   ID    Q+   K     YP 
Sbjct: 9   IAFLVTILTVNVVSLGFANSASADTTKLNLNARAAYA---IDAETGQVLYQKNANKTYPV 65

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           ASLTK++TL +I + +++  L  N ++     V+K A   + S + L     +T  Q   
Sbjct: 66  ASLTKVLTLAVIEQDVKNHHLSWNQKVKITPAVAKVANDWHFSNVPLNAGESYTIRQLTE 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD--------- 184
           +++  SA+  + A     +GS   F   M   AKK G+ +    N  GL +         
Sbjct: 126 SMMIVSADGSAEALALADAGSTAAFNKKMQAVAKKAGVTDAKIYNMIGLANGDLGKNSLK 185

Query: 185 ------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL-- 231
                 +NQ  +A+D A++   L + +P   K    +   +R        + N N LL  
Sbjct: 186 GVKKTAENQF-SAKDMALISKYLIETYPDSLKITKTKMANFRVSANQEYQMININSLLPE 244

Query: 232 ----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM---GMPTSQERD-QKALEL 283
                K   IDG+KTG T  +G  I+++  +    ++ V +   G   +Q +D QK  E 
Sbjct: 245 NGFAPKNGTIDGLKTGNTDTAGKCIISTGTFAGRRVIVVALHTKGDWNAQSKDAQKFYEK 304

Query: 284 ITSF 287
           +T  
Sbjct: 305 LTEI 308


>gi|118471560|ref|YP_886772.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str.
           MC2 155]
 gi|118172847|gb|ABK73743.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str.
           MC2 155]
          Length = 275

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 14/199 (7%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  + +V D++  ++   K     Y PAS  K +   ++ ++L+        +   S T 
Sbjct: 43  PAKAWLVADMDTGRVLASKDPYGSYAPASTIKPLLAMVVLDHLRPDNF---ARANASHTK 99

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S + LK    +TT Q + AL+  S ND +    + + G     A  M+ KA  +G
Sbjct: 100 VEC--SCVGLKPGQPYTTRQLLDALLMVSGNDAANMLADMLGGPRVAVAA-MNRKAAAVG 156

Query: 171 MQNTIYKNASGLHDKN--QITTARDQAILGILLRK--NFPQYYKYFSIRKFRYRNRIITN 226
            +NT   + SGL       +TT  D   L ++ R   N+P   +       ++  + +T 
Sbjct: 157 ARNTRAASPSGLDGPGWESLTTPHD---LAVIFRAALNYPVIAQILRQTTAQFPGKTLTY 213

Query: 227 HNKLLNKMHNIDGIKTGYT 245
            N+LL +     G KTGYT
Sbjct: 214 QNELLTRYPGDIGGKTGYT 232


>gi|53719907|ref|YP_108893.1| peptidase [Burkholderia pseudomallei K96243]
 gi|121599737|ref|YP_993538.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei
           SAVP1]
 gi|126450244|ref|YP_001081045.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei NCTC
           10247]
 gi|237813026|ref|YP_002897477.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei MSHR346]
 gi|238561630|ref|ZP_00441759.2| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei GB8 horse 4]
 gi|52210321|emb|CAH36300.1| family S11 unassigned peptidase [Burkholderia pseudomallei K96243]
 gi|121228547|gb|ABM51065.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei
           SAVP1]
 gi|126243114|gb|ABO06207.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei NCTC
           10247]
 gi|237503680|gb|ACQ95998.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei MSHR346]
 gi|238524246|gb|EEP87680.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei GB8 horse 4]
          Length = 359

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 102/246 (41%), Gaps = 31/246 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N ++    K      P AS+TK+MT  ++ +   
Sbjct: 89  VGQAFGLHETPDSLALRSSVAYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVLD--- 145

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  L  QI V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 146 -SKSPLTDQIDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPG 204

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM +T ++N++GL  +N +++ARD       L K     Y+Y  
Sbjct: 205 GRPAFIAAMNAKAKSLGMTDTHFENSTGLSSQN-VSSARD-------LVKMVNAAYQYPL 256

Query: 214 IRKFRYRNRIITNHNK-----------LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           IRKF        N  K           + N   +I   KTG+   +G  +V        P
Sbjct: 257 IRKFSTDRSYEVNTGKRTLAYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRP 316

Query: 263 IVAVVM 268
           IV V++
Sbjct: 317 IVMVLL 322


>gi|120597728|ref|YP_962302.1| D-alanyl-D-alanine endopeptidase [Shewanella sp. W3-18-1]
 gi|146294135|ref|YP_001184559.1| D-alanyl-D-alanine endopeptidase [Shewanella putrefaciens CN-32]
 gi|120557821|gb|ABM23748.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Shewanella sp. W3-18-1]
 gi|145565825|gb|ABP76760.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
           putrefaciens CN-32]
 gi|319427478|gb|ADV55552.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
           putrefaciens 200]
          Length = 322

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 99/215 (46%), Gaps = 29/215 (13%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N++          P AS+TK+MT  +  +     KL ++ ++ V+  + T+
Sbjct: 57  SALVVDLKTNEVLYSSNPNAVMPIASVTKLMTAMVTLD----AKLPMDQKLAVN-ISDTK 111

Query: 114 NPSKLYLKEK--TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +Y + +  +  T ++ +L  +  S N  + +      G  K F   M+ KAK +GM
Sbjct: 112 EMRGVYSRVRIGSEITRKEMLLLTLMSSENRAAASLAHHYPGGHKAFIKAMNAKAKALGM 171

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-------------FR 218
           +NT Y   +GL  KN +++A D  +L +   + +P   +  +  K             FR
Sbjct: 172 KNTRYVEPTGLSHKN-VSSASDLIVL-LKASEKYPMLGELSATEKKTVTFGKPKYSLDFR 229

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
             NR++   N       NI   KTG+T  +G  +V
Sbjct: 230 NTNRLVYKDN------WNIHLTKTGFTNAAGHCLV 258


>gi|124386303|ref|YP_001029035.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei NCTC
           10229]
 gi|167000634|ref|ZP_02266445.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei
           PRL-20]
 gi|167720361|ref|ZP_02403597.1| family S11 unassigned peptidase [Burkholderia pseudomallei DM98]
 gi|167739353|ref|ZP_02412127.1| family S11 unassigned peptidase [Burkholderia pseudomallei 14]
 gi|167816568|ref|ZP_02448248.1| family S11 unassigned peptidase [Burkholderia pseudomallei 91]
 gi|167846481|ref|ZP_02471989.1| family S11 unassigned peptidase [Burkholderia pseudomallei B7210]
 gi|167895058|ref|ZP_02482460.1| family S11 unassigned peptidase [Burkholderia pseudomallei 7894]
 gi|167903445|ref|ZP_02490650.1| family S11 unassigned peptidase [Burkholderia pseudomallei NCTC
           13177]
 gi|167911694|ref|ZP_02498785.1| family S11 unassigned peptidase [Burkholderia pseudomallei 112]
 gi|254177821|ref|ZP_04884476.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei ATCC
           10399]
 gi|254357958|ref|ZP_04974231.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei
           2002721280]
 gi|124294323|gb|ABN03592.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei NCTC
           10229]
 gi|148027085|gb|EDK85106.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei
           2002721280]
 gi|160698860|gb|EDP88830.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei ATCC
           10399]
 gi|243063443|gb|EES45629.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei
           PRL-20]
          Length = 363

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 102/246 (41%), Gaps = 31/246 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N ++    K      P AS+TK+MT  ++ +   
Sbjct: 93  VGQAFGLHETPDSLALRSSVAYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVLD--- 149

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  L  QI V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 150 -SKSPLTDQIDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPG 208

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM +T ++N++GL  +N +++ARD       L K     Y+Y  
Sbjct: 209 GRPAFIAAMNAKAKSLGMTDTHFENSTGLSSQN-VSSARD-------LVKMVNAAYQYPL 260

Query: 214 IRKFRYRNRIITNHNK-----------LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           IRKF        N  K           + N   +I   KTG+   +G  +V        P
Sbjct: 261 IRKFSTDRSYEVNTGKRTLAYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRP 320

Query: 263 IVAVVM 268
           IV V++
Sbjct: 321 IVMVLL 326


>gi|330960895|gb|EGH61155.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 311

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 106/227 (46%), Gaps = 23/227 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++VID+  +++      +   P AS+TK+MT  ++ +  QS    ++  IPV+    +Q
Sbjct: 44  SAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVVLDAKQS----MDEVIPVN---ISQ 96

Query: 114 NPSKLYLKEKTYFTTEQG----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +  +    +E      +L  +  S N  + +      G    F + M+ KAK +
Sbjct: 97  TPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 156

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-------KYFSIRKFRYRNR 222
           GM++T Y   +GL   N ++TARD   L +  RK +P          K  + RK  Y   
Sbjct: 157 GMKHTAYVEPTGLSVYN-VSTARDLTKLVMAARK-YPMLSELSTTEQKTVTFRKPTY-TL 213

Query: 223 IITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +N + L++K + +I   KTG+T  +G  +V      + P+  V++
Sbjct: 214 GFSNTDHLVHKDNWDIKLTKTGFTNQAGHCLVLLTTMANRPVSVVIL 260


>gi|254191392|ref|ZP_04897896.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254209371|ref|ZP_04915717.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei JHU]
 gi|147750144|gb|EDK57215.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei JHU]
 gi|157939064|gb|EDO94734.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 362

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 102/246 (41%), Gaps = 31/246 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N ++    K      P AS+TK+MT  ++ +   
Sbjct: 92  VGQAFGLHETPDSLALRSSVAYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVLD--- 148

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  L  QI V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 149 -SKSPLTDQIDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPG 207

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM +T ++N++GL  +N +++ARD       L K     Y+Y  
Sbjct: 208 GRPAFIAAMNAKAKSLGMTDTHFENSTGLSSQN-VSSARD-------LVKMVNAAYQYPL 259

Query: 214 IRKFRYRNRIITNHNK-----------LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           IRKF        N  K           + N   +I   KTG+   +G  +V        P
Sbjct: 260 IRKFSTDRSYEVNTGKRTLAYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRP 319

Query: 263 IVAVVM 268
           IV V++
Sbjct: 320 IVMVLL 325


>gi|322390800|ref|ZP_08064310.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis ATCC 903]
 gi|321142470|gb|EFX37938.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis ATCC 903]
          Length = 440

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 109/253 (43%), Gaps = 37/253 (14%)

Query: 51  KPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           KPK + IVID N    + G   D  R   S+ K+M+ Y++F  L+  K+  +T   V+ T
Sbjct: 61  KPK-ADIVIDANTGAILYGDNIDTVRDSGSMAKLMSAYVVFRALKEGKIKYDTV--VTAT 117

Query: 110 AATQNPSKLYLKEKT-------YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            A Q  S+  L   +       Y  +E   +  +  S+  V             KF  LM
Sbjct: 118 EADQAISENNLLSNSPIVAGVDYKVSELIKMLFVPSSSAAVIMLANAVTDNDPDKFLDLM 177

Query: 163 SNKAKKIGMQNTIYKNASG----------------LHDKNQITTARDQAILGILLRKNFP 206
           +  A+++GM +T + N +G                ++  N+I TARD +IL   +  + P
Sbjct: 178 NQYAQEMGMSHTKWHNPNGAMISVLQGYYNPQRYDVNANNEI-TARDMSILAYHIVNDLP 236

Query: 207 QYYKY-----FSIRKFRYRNRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLR 257
           +  +Y      +I +     +   N+N  L      +   DG+KTG +  + +N   + +
Sbjct: 237 EMLEYTKQAHTTIMEGTPYEQSYDNYNTSLEGGKFALKGTDGLKTGSSPTADYNYTATTK 296

Query: 258 YKDDPIVAVVMGM 270
                I+ V++G+
Sbjct: 297 RGKQRIIEVILGV 309


>gi|312867918|ref|ZP_07728122.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis F0405]
 gi|311096322|gb|EFQ54562.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis F0405]
          Length = 437

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 109/253 (43%), Gaps = 37/253 (14%)

Query: 51  KPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           KPK + IVID N    + G   D  R   S+ K+M+ Y++F  L+  K+  +T I  + T
Sbjct: 58  KPK-ADIVIDANTGAILYGDNIDTVRDSGSMAKLMSAYVVFRALKEGKIKYDTVI--TAT 114

Query: 110 AATQNPSKLYLKEKT-------YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            A Q  S+  L   +       Y  +E   +  +  S+  V             KF  LM
Sbjct: 115 EADQAISENNLLSNSPIVAGVDYKVSELIKMLFVPSSSAAVIMLANAVTDNDPDKFLDLM 174

Query: 163 SNKAKKIGMQNTIYKNASG----------------LHDKNQITTARDQAILGILLRKNFP 206
           +  A+++GM +T + N +G                ++  N+I TARD +IL   +  + P
Sbjct: 175 NQYAQEMGMSHTKWHNPNGAMISVLQGYYNPQRYDVNANNEI-TARDMSILAYHIVNDLP 233

Query: 207 QYYKY-----FSIRKFRYRNRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLR 257
           +  +Y      +I +     +   N+N  L      +   DG+KTG +  + +N   + +
Sbjct: 234 EMLEYTKQAHTTIMEGTPYEQSYDNYNTSLEGGKFALKGTDGLKTGSSPTADYNYTATTK 293

Query: 258 YKDDPIVAVVMGM 270
                I+ V++G+
Sbjct: 294 RGKQRIIEVILGV 306


>gi|118594052|ref|ZP_01551399.1| probable D-alanyl-D-alanine carboxypeptidase [Methylophilales
           bacterium HTCC2181]
 gi|118439830|gb|EAV46457.1| probable D-alanyl-D-alanine carboxypeptidase [Methylophilales
           bacterium HTCC2181]
          Length = 256

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 34/209 (16%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-YLKEKTYFTTEQGILALI 136
           ASLTK+MT  +I +      L L  ++ +SK    ++  +L +   +  F T+   L L+
Sbjct: 25  ASLTKLMTAMVIID----SGLDLKEKVVISK----EDIDRLKWTGSRLTFGTKLTRLELL 76

Query: 137 T----RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           +     S N  ++A        +K F   M+ KA ++GM N+ + + +GL DK  I+TAR
Sbjct: 77  SVALMASDNRAASALSRSYPAGKKAFVRAMNIKALQLGMHNSFFADPTGL-DKRNISTAR 135

Query: 193 DQAILGILLRKNFPQYYKYFSIRKF------------RYRNRIITNHNKLLNKMHNIDGI 240
           D       L +     Y+Y  IR              R ++   +N N L+ K     G+
Sbjct: 136 D-------LVRMTKAAYQYPLIRDLSTNPNGNVKVGKRKKSIGFSNTNSLVRKGQWDIGL 188

Query: 241 -KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            KTG+ R +G  +V      ++P++ V++
Sbjct: 189 SKTGFIREAGRCLVMQTVINNEPVIIVLL 217


>gi|320324554|gb|EFW80631.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320328927|gb|EFW84926.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 311

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 105/227 (46%), Gaps = 23/227 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++VID+  +++      +   P AS+TK+MT  ++ +  QS    ++  IPV+    +Q
Sbjct: 44  SAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVVLDAKQS----MDEVIPVN---ISQ 96

Query: 114 NPSKLYLKEKTYFTTEQG----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +  +    +E      +L  +  S N  + +      G    F + M+ KAK +
Sbjct: 97  TPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 156

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-------KYFSIRKFRYRNR 222
           GM++T Y   +GL   N ++TARD   L +  RK +P          K  + RK  Y   
Sbjct: 157 GMKHTAYVEPTGLSVYN-VSTARDLTKLVMAARK-YPMLSELSTTEQKMVTFRKPTY-TL 213

Query: 223 IITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +N + L+ K + +I   KTG+T  +G  +V      + P+  V++
Sbjct: 214 GFSNTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVIL 260


>gi|313903983|ref|ZP_07837363.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Eubacterium
           cellulosolvens 6]
 gi|313471132|gb|EFR66454.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Eubacterium
           cellulosolvens 6]
          Length = 344

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 5/122 (4%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           E  YPASLTK+MT  +  E    ++  + T+   +     Q  S+L + +         +
Sbjct: 116 ERIYPASLTKIMTALLCLESGDLERNVVMTEEDFNLGDGAQ-VSQLDVGDSVSLGD---L 171

Query: 133 LALI-TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           L L+   S+ND S A    + GS   F  +M+ KA+ +GM  T + N  GLH++N  TT 
Sbjct: 172 LNLVLVYSSNDASKAVARTVGGSVDNFVNMMNQKAQSLGMTGTHFANPHGLHEENHYTTL 231

Query: 192 RD 193
            D
Sbjct: 232 YD 233


>gi|300779711|ref|ZP_07089567.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
           genitalium ATCC 33030]
 gi|300533821|gb|EFK54880.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
           genitalium ATCC 33030]
          Length = 434

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 102/233 (43%), Gaps = 21/233 (9%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V DV+   +   K    RY PAS+ K++   +  +     +L L+ ++ VS+ +A Q  
Sbjct: 126 LVADVDTGDVIAMKDPHGRYRPASIIKVLLALVAID-----ELPLDKKVTVSEESAGQEG 180

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S + +     +T    +  L+  S ND S A  + + G +     + + KA+++ +++T 
Sbjct: 181 SAVGIGAGGEYTINDLLHGLLMVSGNDASHALAQELGGDQATLEKINA-KARELNLRDTY 239

Query: 176 YKNASGLHDKNQITTARDQAIL-----------GILLRKNFPQYYKYFSIRKFRYRNRII 224
             + SGL      T+A D  +             I+  + +P +  Y +     +    +
Sbjct: 240 AASYSGLDAPGMSTSAWDMGLAYRVAYENGTFANIIKTEMYP-FPGYIAADGTVFEPFDV 298

Query: 225 TNHNKL-LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
            N N L LN    I G KTGYT ++    V +L      ++AVV+     + R
Sbjct: 299 YNDNHLYLNDPDGIGG-KTGYTDDAHHTFVGALDRDGRRLMAVVLDTTADEAR 350


>gi|15894280|ref|NP_347629.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
           [Clostridium acetobutylicum ATCC 824]
 gi|15023901|gb|AAK78969.1|AE007615_3 D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
           [Clostridium acetobutylicum ATCC 824]
 gi|325508407|gb|ADZ20043.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
           [Clostridium acetobutylicum EA 2018]
          Length = 426

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 107/242 (44%), Gaps = 38/242 (15%)

Query: 55  SSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFE---------YLQSKK----LHL 100
           S+I ID    ++   K QD   +PAS TK++T  I+ E         Y +S K       
Sbjct: 35  SAISIDAKTGEVIYAKNQDAKAFPASTTKLLTSIILNENKKPSDYLYYSESAKEQPEYSF 94

Query: 101 NTQI-PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           +  I P++     + PS + LK    ++       +     N +++   E     +K F+
Sbjct: 95  DKNIHPLN--VGEKLPSDVVLKSLLMYSANDMAYVIAANLINKINSPTDEV----KKDFS 148

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA-ILGILLRKNFPQYYKYFSIRK-- 216
           I+M+N+ KK+G++NT +   +GLHD +  +TA D + I       N+    K  S +K  
Sbjct: 149 IIMNNEVKKLGLKNTHFVTPNGLHDPDHYSTAYDMSRIAKTAFSINW--ILKTISTQKTT 206

Query: 217 ----------FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
                      +  N+II     + +K     G KTGYT  +G  ++T     +  I+ V
Sbjct: 207 VTLNDGAKPELKNTNKIIDPKEPVYDKT--CIGGKTGYTNEAGRCLITIFNRNNKKIIGV 264

Query: 267 VM 268
           VM
Sbjct: 265 VM 266


>gi|291613451|ref|YP_003523608.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sideroxydans
           lithotrophicus ES-1]
 gi|291583563|gb|ADE11221.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sideroxydans
           lithotrophicus ES-1]
          Length = 299

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 92/199 (46%), Gaps = 15/199 (7%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALI 136
           AS+TK+MT  +I +     KL ++  I +S         S+  ++     T  + I   +
Sbjct: 75  ASITKLMTAMVILD----AKLPMDEPISISPEDRDHLKGSRSRMRNGMTLTRAELIQLAL 130

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S N  + A      G       +M+ KA+++GM +T + + +GL+  N ++TA+D  +
Sbjct: 131 MSSENRAAAALARTYPGGTPVMLAMMNAKARELGMNSTHFLDPTGLNSAN-VSTAQD--L 187

Query: 197 LGILLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLL-NKMHNIDGIKTGYTRNSG 249
           + +++     +Y ++ +    R       R    +N N L+ N   +I   KTGY   +G
Sbjct: 188 VKMVMAAQGYEYIQHCTTSHSRIVQVDSRRTLRFSNTNPLVRNSQWDIGLSKTGYISEAG 247

Query: 250 FNIVTSLRYKDDPIVAVVM 268
             +V   R  D P++ V++
Sbjct: 248 RCLVMQARITDRPVIIVLL 266


>gi|317471249|ref|ZP_07930614.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
 gi|316901296|gb|EFV23245.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
          Length = 198

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 12/149 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMT-LYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S+I++D    ++   K  + + P AS TK++T LYII      K  +L  +  VSK AA 
Sbjct: 34  SAILMDAGSGRVLFDKSGKSKMPNASTTKILTCLYII------KHCNLEEEATVSKNAAA 87

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           Q    L  +    +  +  +  L+  S ND +    E  +GS + FA  ++ +A+  G +
Sbjct: 88  QPQVHLGARAGEKYKVKDLLYGLMLESYNDCAVILAEHAAGSTENFAKKLNAEARSYGAK 147

Query: 173 NTIYKNASGLH--DKNQI--TTARDQAIL 197
           +T +   +GL   DKN I  TTA D A++
Sbjct: 148 STHFVTPNGLDRTDKNGIHSTTAYDLALI 176


>gi|289649634|ref|ZP_06480977.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 313

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 105/227 (46%), Gaps = 23/227 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++VID+  +++      +   P AS+TK+MT  ++ +  QS    ++  IPV+    +Q
Sbjct: 46  SAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVVLDAKQS----MDEVIPVN---ISQ 98

Query: 114 NPSKLYLKEKTYFTTEQG----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +  +    +E      +L  +  S N  + +      G    F + M+ KAK +
Sbjct: 99  TPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 158

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-------KYFSIRKFRYRNR 222
           GM++T Y   +GL   N ++TARD   L +  RK +P          K  + RK  Y   
Sbjct: 159 GMKHTAYVEPTGLSVYN-VSTARDLTKLVMAARK-YPMLSELSTTEQKTVTFRKPTY-TL 215

Query: 223 IITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +N + L+ K + +I   KTG+T  +G  +V      + P+  V++
Sbjct: 216 GFSNTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVIL 262


>gi|239815358|ref|YP_002944268.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Variovorax
           paradoxus S110]
 gi|239801935|gb|ACS19002.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Variovorax
           paradoxus S110]
          Length = 394

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 101/211 (47%), Gaps = 25/211 (11%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFE-YLQSKKLHLNTQIPVSKTAATQ 113
           ++VID + +++   K D    P ASLTK+MT  +I E +L + +L   TQ  V     T+
Sbjct: 139 ALVIDQDTHEVLFSKNDHAVLPIASLTKLMTGLLISEAHLPNDELITITQDDVD----TE 194

Query: 114 NPSKLYLKEKTYFTTEQGI-LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
             S+  L   T  +  + + LAL++ S N  + A G    G    F  +M+ KAK +GM+
Sbjct: 195 KGSRSRLTVGTTLSRGELLHLALMS-SENRAAHALGRTYPGGLATFVSIMNAKAKMLGMK 253

Query: 173 NTIYKNASGLHDKNQITTARDQAIL--------GILLRKNFPQYYKYFSIR--KFRYRNR 222
           +T Y   +GL  +NQ ++A+D A+L         +      P+Y      R  +F   NR
Sbjct: 254 DTRYVEPTGLSSRNQ-SSAQDLALLVNAAYSDATVRSLSTSPEYQVEVGNRVLQFNTTNR 312

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
           ++ + +        I   KTGY   +G  +V
Sbjct: 313 LVKSPD------WEIGVQKTGYISEAGQCLV 337


>gi|108798930|ref|YP_639127.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. MCS]
 gi|119868045|ref|YP_937997.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. KMS]
 gi|108769349|gb|ABG08071.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. MCS]
 gi|119694134|gb|ABL91207.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. KMS]
          Length = 291

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 12/204 (5%)

Query: 48  LHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
           + A P  + IV D++  Q+   + D  RY PAS  K +   ++ +     ++ L+T I  
Sbjct: 37  IPAGPAEAWIVADMDTGQVLAGRNDTTRYAPASTIKTLLAQVVLD-----EVPLDTTIAA 91

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
            +       +   +     +T  Q + AL+  S ND +      + G +   A  M+ KA
Sbjct: 92  EEADTRVECNCAGVAPGHVYTARQLLEALLLVSGNDAANTLARMLGGMDSAVA-KMNAKA 150

Query: 167 KKIGMQNTIYKNASGLHDKNQ--ITTARDQAIL--GILLRKNFPQYYKYFS-IRKFRYRN 221
            ++G   T     SGL        +TA D A++    +    F Q     S +   +   
Sbjct: 151 AQLGAHGTNVVTPSGLDGPGMPFWSTAHDLAVIFRAAMANPVFAQITAMPSTVFPTKAGE 210

Query: 222 RIITNHNKLLNKMHNIDGIKTGYT 245
            ++ N N+LL++     G KTG+T
Sbjct: 211 AVLVNQNELLHRYPGAIGGKTGFT 234


>gi|187921395|ref|YP_001890427.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           phytofirmans PsJN]
 gi|187719833|gb|ACD21056.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           phytofirmans PsJN]
          Length = 410

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 103/234 (44%), Gaps = 29/234 (12%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           V+D     +   KQ +   P AS++K+MT  +  +     K  LN   P++ T   Q+  
Sbjct: 173 VVDERTQTVLAEKQADRVMPIASVSKLMTAVVALD----AKHALNA--PLNVTVQDQDFD 226

Query: 117 KLYLKEKTYFTT----EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           K      +  +T    +   +AL++ S N  + A     +G    F   M+ KA+ +GM+
Sbjct: 227 KFTGSRLSVGSTLSRHDMLHIALMS-SENRAAAALSRDYTGGRPGFVAAMNAKARLLGMR 285

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           +T + N +GL  +N ++TARD ++L +     +P    Y + R       ++    +   
Sbjct: 286 HTSFVNGTGLSAQN-VSTARDLSLL-VAAASRYPLIRAYSTDRD----QVVLPGGGRASL 339

Query: 233 KMHNIDGI-----------KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
             HN + +           KTG+   +G  +V  ++    P+  VV+G P + +
Sbjct: 340 SYHNSNALVRGGDRSIVLQKTGFINEAGHCVVVRMKVHGRPVDIVVLGAPGAHD 393


>gi|331091259|ref|ZP_08340100.1| hypothetical protein HMPREF9477_00743 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404706|gb|EGG84245.1| hypothetical protein HMPREF9477_00743 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 125

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 1/93 (1%)

Query: 55  SSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S IV++ +  +M   K  DE   PAS+TK+MT+ +IF+ ++S ++ L   + VS+ AA+ 
Sbjct: 33  SGIVMEASTGKMIYEKNADEKLPPASVTKVMTMLLIFDAIESGEIKLEDNVTVSEFAASM 92

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
             S+++L+     T E  +  +   SAND   A
Sbjct: 93  GGSQVFLEPGETQTVETMLKCIAVASANDACVA 125


>gi|298241559|ref|ZP_06965366.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
           racemifer DSM 44963]
 gi|297554613|gb|EFH88477.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
           racemifer DSM 44963]
          Length = 313

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 98/231 (42%), Gaps = 20/231 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S+ +ID N N    F  D  R  P AS TK+MT  +  E     ++    Q  + +    
Sbjct: 73  SAYIID-NANNRVLFDSDSQRSVPIASTTKIMTAVVTIENSNLDQIVTVQQADLDQLPPE 131

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
            + ++L++ +  Y      +  L+  S +D +      + GS   F  +M+ KA+ +G+ 
Sbjct: 132 ASVAQLHVGD--YLRIRHLLYGLLLPSGSDAALTLARVVGGSTDGFVAMMNAKAQALGLA 189

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS--IRKFRY--------RNR 222
           +T + +  G+      ++A+D   L       +   Y+ F+  +R+  Y        R  
Sbjct: 190 HTHFSSPHGVIPDGNYSSAQDLVKL-----ARYAMRYQIFAEIVRQTEYHIPPTQYNRRY 244

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
              N N+LL     + GIKTG    +G+ +V +    +  +    +G P S
Sbjct: 245 DWYNTNQLLTSYSGVIGIKTGSGSGAGYCVVFAAVRNNRLLYGAELGAPGS 295


>gi|210634508|ref|ZP_03298135.1| hypothetical protein COLSTE_02057 [Collinsella stercoris DSM 13279]
 gi|210158809|gb|EEA89780.1| hypothetical protein COLSTE_02057 [Collinsella stercoris DSM 13279]
          Length = 450

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 98/232 (42%), Gaps = 39/232 (16%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D+P   AS+TK+MT  +  E+       L+  + V   AAT   S L L E    T E  
Sbjct: 76  DDPIKIASVTKVMTALVALEHCD-----LSDTVTVDHAAATVGESSLGLLEGDTLTMEDA 130

Query: 132 ILALITRSAND-----VSTAFGEFISGSEKKFAIL---MSNKAKKIGMQNTIYKNASGLH 183
           +  L+  S ND      +TA  +    S+  +A+    M+ KAK++G  +T+++N  GL 
Sbjct: 131 LTGLMVMSGNDAATAIATTAGAQIDPTSDDPYAVFIEAMNEKAKELGCTDTVFENPHGLD 190

Query: 184 ----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI---ITNHNK------- 229
                 N  +T RD       + K F    +    R     +R    +T+ +        
Sbjct: 191 FDAWAGNLHSTTRD-------ITKVFAAAMQNEDFRAIDNSDRTSIPVTSADGSARTVNL 243

Query: 230 -LLNKMHNID---GIKTGYTRNSGFNIVTSL-RYKDDPIVAVVMGMPTSQER 276
            + N++H  D   G KTG T  +G   V +  R     +   + G  T++ER
Sbjct: 244 VVRNQIHGQDGNIGGKTGTTDEAGNCFVGAFTRDLGGEVYVAIFGAQTNEER 295


>gi|298369173|ref|ZP_06980491.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298283176|gb|EFI24663.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 311

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 11/161 (6%)

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S N  + A      G    F   M+ KA+ +GM N+ +   +GL  +N ++TA D + L 
Sbjct: 155 SENRATHALARTYPGGINAFVAAMNAKAQSLGMSNSRFYEPTGLDYRN-VSTAHDLSRLV 213

Query: 199 I------LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM-HNIDGIKTGYTRNSGFN 251
                  L+R+N    Y   S      R +   N N L+ +   NI+  KTGY R +G +
Sbjct: 214 AAASKYPLIRRNSTSNYGAVSTASGSQRYK---NSNALVREGGWNIELQKTGYIREAGRS 270

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +V     ++ PI  V++  P+S  R   A ++ +  L++++
Sbjct: 271 MVVKANVQNQPITIVLLNSPSSTTRVNDARKIESWMLQRRS 311


>gi|255017532|ref|ZP_05289658.1| hypothetical protein LmonF_06693 [Listeria monocytogenes FSL
           F2-515]
          Length = 166

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 64/110 (58%), Gaps = 9/110 (8%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL---KEKTYFTTEQGILA 134
           ASL+K+MT +++ E + + +L  + ++ + +     +PS + L    +K  ++      A
Sbjct: 57  ASLSKLMTAFLVLEAVDNNELSWDEKLDLVR---LDDPSAVSLYAITQKRTWSVRDLYSA 113

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLH 183
           ++T SAND +   G+ + G++  F   M+N+AKK+GM + T + +ASGL 
Sbjct: 114 MLTMSANDAAETLGDRLDGAD--FPKEMNNQAKKLGMSSKTTFVSASGLD 161


>gi|124267287|ref|YP_001021291.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylibium
           petroleiphilum PM1]
 gi|124260062|gb|ABM95056.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylibium
           petroleiphilum PM1]
          Length = 344

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 21/209 (10%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQ 113
           ++V+D + +++   K  +   P ASLTK+MT  ++ E  QS    L+  + +S+    T+
Sbjct: 90  ALVMDQDTHEVLIDKNAQAVLPIASLTKLMTSVVVVEAGQS----LDEMLTISQDDVDTE 145

Query: 114 NPSKLYLKEKTYFTTEQGI-LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
             S   L   T  T  + + LAL++ S N  + A G    G    F   M+ +A  +GM 
Sbjct: 146 KGSGSRLAVGTQLTRGEMLHLALMS-SENRAAHALGRHYPGGLVAFVSAMNARASLLGMT 204

Query: 173 NTIYKNASGLHDKNQITTARDQAIL------GILLRK--NFPQYYKYFSIRKFRYRNRII 224
           +T Y   +GL  +NQ ++ARD A L        L+R+     +Y      R  +YRN   
Sbjct: 205 DTRYVEPTGLSSRNQ-SSARDLAALVSAAYQHPLIRELSTSQEYSVAVGRRTLQYRN--- 260

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
             +  + N   +I   KTGY   +G  +V
Sbjct: 261 -TNGLVRNPAWDIGLQKTGYISEAGRCLV 288


>gi|289624340|ref|ZP_06457294.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|298487139|ref|ZP_07005189.1| Murein-DD-endopeptidase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298158382|gb|EFH99452.1| Murein-DD-endopeptidase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330868676|gb|EGH03385.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330891159|gb|EGH23820.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330985252|gb|EGH83355.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331008609|gb|EGH88665.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 311

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 105/227 (46%), Gaps = 23/227 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++VID+  +++      +   P AS+TK+MT  ++ +  QS    ++  IPV+    +Q
Sbjct: 44  SAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVVLDAKQS----MDEVIPVN---ISQ 96

Query: 114 NPSKLYLKEKTYFTTEQG----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +  +    +E      +L  +  S N  + +      G    F + M+ KAK +
Sbjct: 97  TPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 156

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-------KYFSIRKFRYRNR 222
           GM++T Y   +GL   N ++TARD   L +  RK +P          K  + RK  Y   
Sbjct: 157 GMKHTAYVEPTGLSVYN-VSTARDLTKLVMAARK-YPMLSELSTTEQKTVTFRKPTY-TL 213

Query: 223 IITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +N + L+ K + +I   KTG+T  +G  +V      + P+  V++
Sbjct: 214 GFSNTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVIL 260


>gi|118381024|ref|XP_001023674.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
            thermophila]
 gi|89305441|gb|EAS03429.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
            thermophila SB210]
          Length = 1098

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 109/271 (40%), Gaps = 71/271 (26%)

Query: 78   ASLTKMMTLYIIFEYLQSKKLHL-NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            ASLTK+MT Y+  ++L+  +L + N  I VSK A     +   L++  + +T + +  L+
Sbjct: 805  ASLTKIMTCYVTIKFLEENQLDIKNVFIEVSKAATKTIGTTANLEKGDFVSTYELLYGLM 864

Query: 137  TRSANDVSTAFGEFIS----------------------GSEKK----------------- 157
              S ND +    E +                       G +K                  
Sbjct: 865  LPSGNDAAVVLSEGVGYLLYCQQSKLSFTNDNTSSGVPGDQKIYVNYKCKSEAGGLNQCM 924

Query: 158  --FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
              F   M+ +A+K+G++ T Y    GL +K   +TA+D  +L  ++ K  P   K  + +
Sbjct: 925  NIFIKEMNKQAQKVGLERTNYACVHGLSNKYNTSTAKDVGLLSCIVMK-HPLIQKVVNTK 983

Query: 216  KFRYRNRI-----------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
            ++   + +             N N++L K    DG+KTG T  +G  + +S + K     
Sbjct: 984  EYETVDVLDQEKSNQDQYEWENTNQMLEK-KGYDGVKTGVTETAGPCLSSSYKCK----- 1037

Query: 265  AVVMGMPTSQERDQKALELITSFLEKKTLKH 295
                       R+ K + LI   L  K++ H
Sbjct: 1038 -----------RNGKQVGLICVLLNCKSMDH 1057


>gi|167758172|ref|ZP_02430299.1| hypothetical protein CLOSCI_00510 [Clostridium scindens ATCC 35704]
 gi|167664069|gb|EDS08199.1| hypothetical protein CLOSCI_00510 [Clostridium scindens ATCC 35704]
          Length = 342

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 9/122 (7%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK----LYLKEKTYFTTEQG 131
           YPAS TK+MT  +       KK +L   + V   A   N +       +K     T    
Sbjct: 101 YPASTTKIMTALVAL-----KKGNLTDMVTVQADADAANFAADEKTCGIKAGDQMTLGDL 155

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  L+  S ND + A  ++I G+ ++FA +M+ +A+ +    T + N++GLH++N  TTA
Sbjct: 156 LHGLLMESGNDAAVAIADYIGGNSEQFAQMMNEEAQALMATKTHFLNSNGLHNENHYTTA 215

Query: 192 RD 193
            D
Sbjct: 216 YD 217


>gi|302670789|ref|YP_003830749.1| D-alanyl-D-alanine carboxypeptidase DacA1 [Butyrivibrio
           proteoclasticus B316]
 gi|302395262|gb|ADL34167.1| D-alanyl-D-alanine carboxypeptidase DacA1 [Butyrivibrio
           proteoclasticus B316]
          Length = 387

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 82/185 (44%), Gaps = 13/185 (7%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK++TL +  E++            +     + + S +        T    +   I
Sbjct: 163 PASMTKILTLLVAAEHITDLDDTFEMTQEIGDFVYSHDCSAVGFSVGEKLTVRDLLYGTI 222

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI-YKNASGLHDKNQITTARDQA 195
             S  D +    E+++GS++ F  +M++K  ++G+ ++  + N  G+++++   T  D A
Sbjct: 223 LPSGGDAAMCLAEYVAGSQEAFVDMMNDKLTELGLSDSAHFTNCIGIYNEDHYCTLMDMA 282

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKMHNID------GIKTGY 244
           ++     +N    ++  S R +   N +     IT  N  + ++ + D      G KTG+
Sbjct: 283 MILKAAEEN-NLCHEVLSTRVYTTSNTVEHPEGITISNWFIRRIEDKDTHGEVVGAKTGF 341

Query: 245 TRNSG 249
              SG
Sbjct: 342 VVQSG 346


>gi|269928430|ref|YP_003320751.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787787|gb|ACZ39929.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sphaerobacter
           thermophilus DSM 20745]
          Length = 326

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 103/250 (41%), Gaps = 19/250 (7%)

Query: 50  AKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           A+P  ++   IV+D     +   ++   R   ASLTKM+T  +  E     +  L   + 
Sbjct: 27  ARPDVAARNWIVMDGASGDVLDAQEPHQRTAIASLTKMLTALVAVE-----RADLEQVVT 81

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS--------EKK 157
           V ++   +  S   L+E    +    +  L+  S ND + A    + GS          +
Sbjct: 82  VMRSDLIRG-SSARLREGERLSLRTLLYGLLLPSGNDAALAIARAVGGSPHADDQAARGR 140

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   M+ +A  +G+ +T   N  GL  ++   +A D A++   + ++ P     F    +
Sbjct: 141 FIDWMNERAVSLGLTDTRVVNPHGLDARDHFGSAHDLALVTRAVLES-PVLAPIFGAHDY 199

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
                   + NKL  +   I G KTG+TR +G  +V         ++ V++G  + +  D
Sbjct: 200 SGEGHRYESTNKLWERYPGIIGGKTGWTRAAGHCLVEVAERDGRRVIVVLLGSTSERWYD 259

Query: 278 QKALELITSF 287
              + L   F
Sbjct: 260 DATVLLDHGF 269


>gi|94310149|ref|YP_583359.1| murein-DD-endopeptidase [Cupriavidus metallidurans CH34]
 gi|93354001|gb|ABF08090.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Cupriavidus
           metallidurans CH34]
          Length = 393

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 103/225 (45%), Gaps = 23/225 (10%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQ 113
           ++V+D N N++   K      P AS+TK+MT  ++ +     +L ++  + V++    T+
Sbjct: 123 ALVMDQNTNEVLFQKNPTAVLPIASITKLMTALVVMD----ARLPMDEMLTVTEEDRDTE 178

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   L+  T  T ++ +L  +  S N  ++A G    G    F   M+ KA+++GM +
Sbjct: 179 KHSSSRLRFGTQLTRQEMLLLALMSSENRAASALGRNYPGGLPAFVGAMNRKARELGMSD 238

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNF--------PQYYKYFSIRKFRY--RNRI 223
           + + +++GL   N +++A D A L     +N         P++      R   Y   NR+
Sbjct: 239 SHFVDSNGLSSSN-VSSAMDLARLVNAAYRNPTIREYSTQPEHEVTVFGRPMHYVSTNRL 297

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +   N       +I   KTGY   +G  +V   R  D  +V V +
Sbjct: 298 VRGGN------WDIGLQKTGYISEAGQCLVMQTRVNDRNVVMVFL 336


>gi|24372585|ref|NP_716627.1| D-alanyl-D-alanine endopeptidase [Shewanella oneidensis MR-1]
 gi|24346606|gb|AAN54072.1|AE015544_5 D-alanyl-D-alanine endopeptidase [Shewanella oneidensis MR-1]
          Length = 321

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 100/215 (46%), Gaps = 29/215 (13%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N++      D  R  AS+TK+MT  +  +     KL ++ ++ ++    T+
Sbjct: 56  SALVVDLKTNEILYSSNPDAVRPIASVTKLMTAMVTLD----AKLPMDEKLTIN-IKDTK 110

Query: 114 NPSKLYLKEK--TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +Y + +  +  + ++ +L  +  S N  + +      G  K F   M+ KAK +GM
Sbjct: 111 EMRGVYSRVRIGSEISRKEMLLLTLMSSENRAAASLAHHYPGGHKAFIKAMNAKAKALGM 170

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-------------FR 218
           +N+ +   +GL  KN +++ARD  +L +   + +P   +  S  K             FR
Sbjct: 171 KNSRFVEPTGLSAKN-VSSARDLVVL-LKASQGYPMLGQLSSTEKKTVTFGKPKYSLDFR 228

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
             NR++   N       +I   KTG+T  +G  +V
Sbjct: 229 NTNRLVYKDN------WDIHLTKTGFTNAAGHCLV 257


>gi|225567960|ref|ZP_03776985.1| hypothetical protein CLOHYLEM_04033 [Clostridium hylemonae DSM
           15053]
 gi|225163248|gb|EEG75867.1| hypothetical protein CLOHYLEM_04033 [Clostridium hylemonae DSM
           15053]
          Length = 311

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 106/239 (44%), Gaps = 27/239 (11%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQ-SKKLHLNTQIPVSKTAAT 112
           ++ + DV+K+ +   +   E  YPAS TK+MT  +  +    S  + +      S  AA 
Sbjct: 60  AAALFDVDKSDVDFAYNVHERLYPASTTKIMTALVAIKNADLSDVVTVGADADESSFAAD 119

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           +    L  K     T E  +  L+  S ND + A  +++ GS + FA +M+ +A ++   
Sbjct: 120 EQTCGL--KAGDRLTLEALLNGLLLYSGNDNAVAIADYVGGSMEGFAEMMNEEAARLMAT 177

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN---- 228
            + + N++GLH+++  TTA D      L+     ++ ++  I + +     IT  +    
Sbjct: 178 ESHFLNSNGLHNEDHYTTAYDL----YLIFNECIKHEEFLDIIRAKSYTADITGADGNKR 233

Query: 229 --------------KLLNKMHNIDGIKTGYTRNSG-FNIVTSLRYKDDPIVAVVMGMPT 272
                           L +   I G KTG T+ +G   I+ S   +  P +++VMG  T
Sbjct: 234 QITWEPTSFYALGEAALPQNATIIGGKTGTTKEAGNCLILLSEDGQSRPFISIVMGADT 292


>gi|213023637|ref|ZP_03338084.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 73

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 37/60 (61%)

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  ++++GS++ F  LM+  AK++G+ NT ++   GL    Q +TARD
Sbjct: 13  GIIIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARD 72


>gi|145224759|ref|YP_001135437.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
           gilvum PYR-GCK]
 gi|145217245|gb|ABP46649.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
           gilvum PYR-GCK]
          Length = 277

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 22/203 (10%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKL----HLNTQIPV 106
           P  + +V D++  ++   K     Y PAS  K++    + ++L+          +T+I  
Sbjct: 44  PAKAWLVADLDTGRVLASKDPYGTYAPASTIKVLLAMTVLDHLRPDSFARANESHTKIEC 103

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
           S   A   P + Y       TT Q + A++  S ND +T  G+ + G     A  M+ KA
Sbjct: 104 S--CAGLTPGQAY-------TTAQLVSAILMVSGNDAATMLGDMLGGQRVAVAA-MNRKA 153

Query: 167 KKIGMQNTIYKNASGLHDKN--QITTARDQAILGILLRK--NFPQYYKYFSIRKFRYRNR 222
             +G ++T   + SGL       +TT  D   L +++R    +P   +        +  +
Sbjct: 154 ALVGARSTKASSTSGLDGPGWESVTTPHD---LAVIMRAALKYPLIAQIMRSPTAPFPGK 210

Query: 223 IITNHNKLLNKMHNIDGIKTGYT 245
            + N N+LL++     G KTG+T
Sbjct: 211 TLHNQNELLSRYPGDLGGKTGFT 233


>gi|77459922|ref|YP_349429.1| D-alanyl-D-alanine endopeptidase [Pseudomonas fluorescens Pf0-1]
 gi|77383925|gb|ABA75438.1| penicillin-binding protein 7 precursor [Pseudomonas fluorescens
           Pf0-1]
          Length = 312

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 106/225 (47%), Gaps = 19/225 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI---PVSKTA 110
           S++++D+  N++      +   P AS++K+MT  ++ E  Q+    ++  I   P  K  
Sbjct: 44  SALLMDLQTNKVIYSSNPDVVVPIASVSKLMTGLVVVEAHQNMDEWIDVDISHTPEMKGV 103

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            ++      +K ++     + +L  +  S N  + +      G    F   M+ KAK +G
Sbjct: 104 FSR------VKLRSELPRREMLLIALMSSENRAAASLAHHYPGGYAAFIAAMNAKAKALG 157

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT- 225
           M +T +   +GL ++N ++TARD + L +   K  P   +  + ++    FR  N  +  
Sbjct: 158 MTSTHFVEPTGLSERN-VSTARDLSKLLVAAHKQ-PLLIELTTTKEKTVSFRKPNYTLGF 215

Query: 226 -NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            N + L+NK   +I   KTG+T  +G  +V   R  + P+  V++
Sbjct: 216 RNTDHLVNKADWDIRITKTGFTNPAGHCLVLVTRMANRPVALVIL 260


>gi|312961792|ref|ZP_07776290.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas fluorescens WH6]
 gi|311284051|gb|EFQ62634.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas fluorescens WH6]
          Length = 307

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 107/225 (47%), Gaps = 19/225 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLN---TQIPVSKTA 110
           S++++D+  N++      +   P AS++K+MT  I+ E  Q+   +++   T  P  K  
Sbjct: 40  SAMLVDLQTNKVIYASNPDVVVPIASVSKLMTGLIVLEAKQNMDEYIDINITDTPEMKGV 99

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            ++      +K  +    ++ +L  +  S N  + +      G    F   M+ KAK +G
Sbjct: 100 FSR------VKIGSQMPRKEMLLIALMSSENRAAASLAHHYPGGYAAFIAAMNAKAKALG 153

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRII-- 224
           M +T Y   +GL   N ++TARD + L    RK FP   +  + ++    FR  N  +  
Sbjct: 154 MTSTHYVEPTGLSIHN-VSTARDLSKLLAYARK-FPMLSQLSTTKEKTVSFRKPNYTLGF 211

Query: 225 TNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +N + L+N+ + +I   KTG+T  +G  +V      + P+  V++
Sbjct: 212 SNTDHLINRANWDIKLTKTGFTNQAGHCLVLVTSMGNRPVSLVIL 256


>gi|315445089|ref|YP_004077968.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1]
 gi|315263392|gb|ADU00134.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1]
          Length = 277

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 22/203 (10%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKL----HLNTQIPV 106
           P  + +V D++  ++   K     Y PAS  K++    + ++L+          +T+I  
Sbjct: 44  PAKAWLVADLDTGRVLASKDPYGTYAPASTIKVLLAMTVLDHLRPDSFARANESHTKIEC 103

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
           S   A   P + Y       TT Q + A++  S ND +T  G+ + G     A  M+ KA
Sbjct: 104 S--CAGLTPGQAY-------TTAQLVSAILMVSGNDAATMLGDMLGGQRVAVAA-MNRKA 153

Query: 167 KKIGMQNTIYKNASGLHDKN--QITTARDQAILGILLRK--NFPQYYKYFSIRKFRYRNR 222
             +G ++T   + SGL       +TT  D   L +++R    +P   +        +  +
Sbjct: 154 ALVGARSTKASSTSGLDGPGWESVTTPHD---LAVIMRAALKYPLIAQIMRSPTAPFPGK 210

Query: 223 IITNHNKLLNKMHNIDGIKTGYT 245
            + N N+LL++     G KTG+T
Sbjct: 211 TLHNQNELLSRYPGDLGGKTGFT 233


>gi|126434530|ref|YP_001070221.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. JLS]
 gi|126234330|gb|ABN97730.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. JLS]
          Length = 291

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 12/204 (5%)

Query: 48  LHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
           + A P  + IV D++  Q+   + D  RY PAS  K +   ++ +     ++ L+T I  
Sbjct: 37  IPAGPAEAWIVADMDTGQVLAGRNDTTRYAPASTIKTLLAQVVLD-----EVPLDTTIAA 91

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
            +       +   +     +T  Q + AL+  S ND +      + G +   A  M+ KA
Sbjct: 92  EEADTRVECNCAGVAPGHVYTARQLLEALLLVSGNDAANTLARMLGGMDSAVA-KMNAKA 150

Query: 167 KKIGMQNTIYKNASGLHDKNQ--ITTARDQAIL--GILLRKNFPQYYKYFS-IRKFRYRN 221
            ++G   T     SGL        +TA D A++    +    F Q     S +   +   
Sbjct: 151 AQLGAHGTNVVTPSGLDGPGMPFWSTAHDLAVIFRAAMANPVFVQITAMPSTVFPTKAGE 210

Query: 222 RIITNHNKLLNKMHNIDGIKTGYT 245
            ++ N N+LL++     G KTG+T
Sbjct: 211 AVLVNQNELLHRYPGAIGGKTGFT 234


>gi|258651532|ref|YP_003200688.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Nakamurella
           multipartita DSM 44233]
 gi|258554757|gb|ACV77699.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Nakamurella
           multipartita DSM 44233]
          Length = 550

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 11/209 (5%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           ++ D++  ++   K    RY PAS  K++T  ++ + L     +L+  +  ++    Q+ 
Sbjct: 115 LIADLDTGEVLAAKDPHGRYRPASTLKLLTAQVMLKNLT----NLDQVVQGTQADTAQDG 170

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           +++ ++    +T    +  L+  S ND + A      G +K  A  M+  AK +G  +T 
Sbjct: 171 TRVGIEAGGTYTVRDLLSYLVMISGNDAANALARTNGGYDKTIAD-MNATAKALGALDTR 229

Query: 176 YKNASGLHDKNQITTARDQAILG--ILLRKNFPQYYKYFSIRKFRYRNR--IITNHNKLL 231
               SGL    Q T+A D A+     +    FP+      IR         I  N N+LL
Sbjct: 230 AATPSGLDGPGQSTSAYDLALFAKADMAIAPFPEIIARPDIRVPAASGEGYIAANDNQLL 289

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
            +     G KTG+T ++G N    +  KD
Sbjct: 290 AQYPGALGGKTGFTDDAG-NTFVGMAAKD 317


>gi|5353565|gb|AAD42182.1|AF130997_3 D,D carboxypeptidase [Enterococcus faecium]
          Length = 356

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 103/235 (43%), Gaps = 37/235 (15%)

Query: 77  PASLTKMMTLYIIFEYLQSK-KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           PAS  KM+      +Y   + ++ +  +I + ++    + S  +L +    T  Q ++AL
Sbjct: 126 PASTAKMIMALTALDYCSPEDEMKVGAEIGMIQS----DSSTAWLMKGDTLTVRQLLIAL 181

Query: 136 ITRSANDVSTAF----GEFISG-----SEKKFAILM---SNKAKKIGMQNTIYKNASGLH 183
           +  S ND +       G+ I+G     S++   + M   + KA  +G  N+ +    G  
Sbjct: 182 MLPSGNDAAYTLAVNTGKAIAGDNSLTSQQAIEVFMDKVNEKAVALGATNSKFVAPDGYD 241

Query: 184 DKNQITTARDQAILGILLRKN---------FPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            + Q TTA D AI+      N         +  Y K+ + R+  Y N      N+LL+  
Sbjct: 242 AEGQYTTAYDLAIIAKACLDNPIISEIVASYSSYEKWSNGREVTYNN-----SNELLDPN 296

Query: 235 H-----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                  + G+KTG +   G  IV++     +  + VVMG  T + R Q +++++
Sbjct: 297 SPYYRPEVIGLKTGTSSLGGACIVSAAVMDGETYICVVMG-STKESRFQDSVDIL 350


>gi|145523692|ref|XP_001447679.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124415201|emb|CAK80282.1| unnamed protein product [Paramecium tetraurelia]
          Length = 458

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 102/246 (41%), Gaps = 45/246 (18%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT-QIPVSKTAATQNPSKLYLKEKTYF 126
            F+  +    AS+TK+MT Y   ++L+ K++ +   +I +   A   + +  +L      
Sbjct: 202 AFQDQQKSEVASITKVMTCYTTLKFLEEKRIDMEAIRIKIPGHAECIDGTSAFLNAGGIM 261

Query: 127 TTEQGILALITRSANDV------STAF------------GEFISGS---EK-------KF 158
             +Q + A++  S ND       + AF            G FI      EK       +F
Sbjct: 262 NIKQLLFAMMLPSGNDAALVLSYAIAFLKTCDNIQRYFNGHFIDCELEIEKNKFQLRTQF 321

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD-----------QAILGILLRKNFPQ 207
             +M+N A+ + M  T Y +  GL+D   ++ A D           +  + I+  + F  
Sbjct: 322 LQMMNNHAENLKMDKTNYNSVHGLNDALNVSCALDIFKLVEDCIKIKEFMEIVNTRCFKT 381

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           Y      ++  Y      N NKLL K     GIKTG T N+G     S  YK D   A+V
Sbjct: 382 YAMTEQGKQGTYYK--WKNTNKLLKK-EGWQGIKTGITSNAG--PCFSGYYKTDDFDAIV 436

Query: 268 MGMPTS 273
           + + +S
Sbjct: 437 IVLQSS 442


>gi|325523666|gb|EGD01938.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. TJI49]
          Length = 372

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 104/247 (42%), Gaps = 32/247 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N  +    K      P AS++K+MT  ++ +   
Sbjct: 101 VGQAFGLHDTPDALALRSSVAYVVDQNTGEPLFDKNSHAVVPIASISKLMTAMVVLD--- 157

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  +  QI V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 158 -SKAPMTDQIEVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPG 216

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM +T ++N++GL   N +++ARD       L K     Y+Y  
Sbjct: 217 GRPAFIAAMNAKAKALGMTDTHFENSTGLSSSN-VSSARD-------LVKMVNAAYQYPL 268

Query: 214 IRKFRY----------RNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           IR+F            RN +  + N L+  N   +I   KTG+   +G  +V        
Sbjct: 269 IRQFSTDRTYEVYTGKRNLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGR 328

Query: 262 PIVAVVM 268
           P+V V++
Sbjct: 329 PMVMVLL 335


>gi|298251261|ref|ZP_06975064.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
           racemifer DSM 44963]
 gi|297545853|gb|EFH79721.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
           racemifer DSM 44963]
          Length = 338

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 103/246 (41%), Gaps = 22/246 (8%)

Query: 39  IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSK- 96
           + ++  A  + AK  Y   ++D +   +   +  E   P AS TK+MT  ++ E    K 
Sbjct: 69  LTVVGGAPPIDAKAAY---LLDTDTGNVLDDQNAEQPLPMASTTKIMTALVVIEAANLKQ 125

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           ++ ++  IP  +     N S   L      T    + AL+  S +D +      ++GS  
Sbjct: 126 EVTVSPDIP--QYVFQHNGSNAKLVPGDTLTINDLLYALMLPSGDDAAIVLARAVAGSSD 183

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGL--HDKN------QITTARDQAILGILLRKNFPQY 208
            F  +M+  A +  +  T + N  GL  +D N        ++ARD A L      N P +
Sbjct: 184 AFVGMMNCFALRHHLFQTHFINPDGLTYYDANGKPLPGHYSSARDLARLTAYALSN-PLF 242

Query: 209 YKYFSIRKF------RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
            K    R++      ++     TN N L N      G+KTG+T  +G+ +V S       
Sbjct: 243 AKIVGTRQYDLAWSPKHGAYHWTNTNDLFNLYPATTGVKTGFTNEAGYCLVFSATRDHHH 302

Query: 263 IVAVVM 268
           +V  V+
Sbjct: 303 LVGTVL 308


>gi|302867861|ref|YP_003836498.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Micromonospora
           aurantiaca ATCC 27029]
 gi|302570720|gb|ADL46922.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Micromonospora
           aurantiaca ATCC 27029]
          Length = 426

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 19/221 (8%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSK 96
            +++   +S   A    S +V D++    + G    E   PAS+ K++    +   L   
Sbjct: 73  GLVVPPASSAPPAVTATSWVVADLDSGAVLGGCGPHEYGVPASVQKLLLAATMLPRLDP- 131

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
             H    +     A     S + L E   +  E   L L+ RS N+ + A      G + 
Sbjct: 132 --HREVTVTAGDLAVEPGSSAVGLVEGGRYQIETIWLGLLLRSGNEAANALARLGGGPDG 189

Query: 157 KFAIL--MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYF 212
               +  M+ +A ++G + T     SGL    Q T+A D   L ++ R  F  P + +Y 
Sbjct: 190 LAGGVRAMNEEAHRLGARQTHAVTPSGLDGPGQFTSAYD---LALIARACFADPAFRRYA 246

Query: 213 SIR--------KFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
           + R          R +   I+N N LL+      G KTG+T
Sbjct: 247 ATRIAQIPAQPAQRAKGFAISNDNMLLDHYPGALGGKTGFT 287


>gi|311110173|ref|ZP_07711570.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus gasseri
           MV-22]
 gi|311065327|gb|EFQ45667.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus gasseri
           MV-22]
          Length = 201

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 8/124 (6%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           EL AK   S+I ID+   Q+   K  + + P AS++K++T+Y+  + + +KKL  N ++ 
Sbjct: 58  ELQAK---SAIAIDLKSGQVLYAKNADKKLPVASMSKLITIYLTLDAINNKKLSWNQKVK 114

Query: 106 VSKTAA--TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
            +K     + NP  S + LK    +T +Q   A + +SAN  +   G+ ISGS++ F   
Sbjct: 115 PTKQIVKISNNPEYSGVPLKLNHAYTIKQLYEATLIQSANGPAMLLGQAISGSQQAFVKK 174

Query: 162 MSNK 165
           M N+
Sbjct: 175 MRNQ 178


>gi|296877208|ref|ZP_06901248.1| DD-carboxypeptidase [Streptococcus parasanguinis ATCC 15912]
 gi|296431728|gb|EFH17535.1| DD-carboxypeptidase [Streptococcus parasanguinis ATCC 15912]
          Length = 440

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 37/253 (14%)

Query: 51  KPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           KPK + IVID N    + G   D  R   S+ K+M+ Y++F  L+  K+  +T   V+ T
Sbjct: 61  KPK-ADIVIDANTGAILYGDNIDTVRDSGSMAKLMSAYVVFRALKEGKIKYDTV--VTAT 117

Query: 110 AATQNPSKLYLKEKT-------YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            A Q  S+  L   +       Y  +E   +  +  S+  V             KF  LM
Sbjct: 118 EADQAISENNLLSNSPIVAGVDYKVSELIKMLFVPSSSAAVIMLANAVTDNDPDKFLDLM 177

Query: 163 SNKAKKIGMQNTIYKNASG----------------LHDKNQITTARDQAILGILLRKNFP 206
           +  ++++GM +T + N +G                ++  N+I TARD +IL   +  + P
Sbjct: 178 NQYSQEMGMSHTKWHNPNGAMISVLQGYYNPQRYDVNANNEI-TARDMSILAYHIVNDLP 236

Query: 207 QYYKY-----FSIRKFRYRNRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLR 257
           +  +Y      +I +     +   N+N  L      +   DG+KTG +  + +N   + +
Sbjct: 237 EMLEYTKQAHTTIMEGTPYEQSYDNYNTSLEGGKFALKGTDGLKTGSSPTADYNYTATTK 296

Query: 258 YKDDPIVAVVMGM 270
                I+ V++G+
Sbjct: 297 RGKQRIIEVILGV 309


>gi|171059568|ref|YP_001791917.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Leptothrix
           cholodnii SP-6]
 gi|170777013|gb|ACB35152.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Leptothrix
           cholodnii SP-6]
          Length = 323

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 104/247 (42%), Gaps = 20/247 (8%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQ 113
           + VID   +++   K  +   P ASLTK+MT  ++ E  Q     L+  + VS+    T+
Sbjct: 69  AFVIDQETSEVLFSKNPQAVLPIASLTKLMTALVVVEAGQP----LDEILEVSEADVDTE 124

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+  L   T  T E  +   +  S N  + A G    G    F   M+ KA  +GM +
Sbjct: 125 KFSRSRLAVGTRLTREDMLHLALMSSENRAAHALGRHFPGGLNAFVDAMNFKAASLGMAD 184

Query: 174 TIYKNASGLHDKNQITTARDQAIL-----GILLRKNF---PQYYKYFSIRKFRYRNRIIT 225
           T Y   +GL  +NQ  +A D A L        L ++F   P+       R  ++RN    
Sbjct: 185 THYVEPTGLSSRNQ-ASAPDLARLVKAAYAYPLLRDFSTTPEAEVEVGRRTMQFRN---- 239

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            +  + N   +I   KTGY   +G  +V   ++    ++ V +       R   A E + 
Sbjct: 240 TNGLIRNPTWDIGLQKTGYIVEAGRCLVMQAKFAGRQLIMVFLDSTGKYSRLGDA-ERVR 298

Query: 286 SFLEKKT 292
            +LE  T
Sbjct: 299 RWLESDT 305


>gi|315505737|ref|YP_004084624.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Micromonospora
           sp. L5]
 gi|315412356|gb|ADU10473.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Micromonospora
           sp. L5]
          Length = 419

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 93/230 (40%), Gaps = 24/230 (10%)

Query: 32  GKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLY 87
           G  L  + +++  AS   A P  ++   +V D++    + G    E   PAS+ K++   
Sbjct: 59  GAALDTAGLVVPPASS--APPAVTATSWVVADLDSGAVLGGCGPHEYGVPASVQKLLLAA 116

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
            +   L     H    +     A     S + L E   +  E   L L+ RS N+ + A 
Sbjct: 117 TMLPRLDP---HREVTVTAGDLAVEPGSSAVGLVEGGRYRIETIWLGLLLRSGNEAANAL 173

Query: 148 GEFISGSEKKFAIL--MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
                G +     +  M+ +A ++G + T     SGL    Q T+A D   L ++ R  F
Sbjct: 174 ARLGGGPDGLAGGVRAMNEEAHRLGARQTHAVTPSGLDGPGQFTSAYD---LALIARACF 230

Query: 206 --PQYYKYFSIR--------KFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
             P + +Y + R          R +   I+N N LL+      G KTG+T
Sbjct: 231 ADPAFRRYATTRIAQIPAQPAQRAKGFAISNDNMLLDHYPGALGGKTGFT 280


>gi|304395773|ref|ZP_07377656.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pantoea sp.
           aB]
 gi|304357067|gb|EFM21431.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pantoea sp.
           aB]
          Length = 347

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 103/231 (44%), Gaps = 31/231 (13%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+  N++      D  R  AS+TK+MT  ++ +  Q     +N  IPV     +Q
Sbjct: 78  SAMIVDLTTNKVLFSSHPDRVRPIASITKLMTAMVVLDAHQP----MNEMIPVD---ISQ 130

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    ++       +LAL++ S N  + +      G    F   M+ KA+ 
Sbjct: 131 TPEMRGVFSRVKLNSQISRRNMMLLALMS-SENRAAASLAHAYPGGYNAFIRAMNAKARS 189

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-----------F 217
           +GM+ T Y   +GL  +N +++A+D   L +   + +P+     + ++            
Sbjct: 190 LGMKQTRYVEPTGLSTQN-VSSAQDLVKL-LKATREYPELGALSTTKEETAVFAHPSYAL 247

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            +RN   TNH    N  H I   KTGYT  +G  +V      + P+  VV+
Sbjct: 248 PFRN---TNHLVYKNDWH-IQLTKTGYTDEAGHCLVMRTMINNRPVALVVL 294


>gi|238028027|ref|YP_002912258.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           glumae BGR1]
 gi|237877221|gb|ACR29554.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           glumae BGR1]
          Length = 379

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 89/203 (43%), Gaps = 24/203 (11%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALI 136
           AS++K+MT  ++ +     K  L  QI V+      +  +   L   +  + E  +   +
Sbjct: 152 ASISKLMTAMVVLD----SKAPLEEQIEVTDADRDYEKGTGSRLSVGSVLSREDMLHIAL 207

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S N  + A   +  G    F   M+ KAK +GM +T ++N++GL   N +++ARD   
Sbjct: 208 MASENRAAAALSRYYPGGRPAFIAAMNAKAKALGMTDTHFENSTGLTSLN-VSSARD--- 263

Query: 197 LGILLRKNFPQYYKYFSIRKFRY----------RNRIITNHNKLL-NKMHNIDGIKTGYT 245
               L K     Y+Y  IR+F            R+ +  + N L+ N   +I   KTG+ 
Sbjct: 264 ----LVKMIDAAYQYPLIRRFSTDRTYTVFTGKRSLVYNSTNALVRNPSWDIGLQKTGFI 319

Query: 246 RNSGFNIVTSLRYKDDPIVAVVM 268
             +G  +V        PIV V++
Sbjct: 320 NEAGECLVMQATIHGRPIVMVLL 342


>gi|238021454|ref|ZP_04601880.1| hypothetical protein GCWU000324_01354 [Kingella oralis ATCC 51147]
 gi|237868434|gb|EEP69440.1| hypothetical protein GCWU000324_01354 [Kingella oralis ATCC 51147]
          Length = 336

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 93/222 (41%), Gaps = 25/222 (11%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGIL 133
           R  AS++K+M+  ++ +      L +N QI +++    +   +   L   T  T  Q + 
Sbjct: 119 RSIASISKLMSAMVLLD----AHLDMNEQITITEAEIDRLKGTGSRLSVGTTLTRAQLLH 174

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
             +  S N    A      G    F   M+ KA+ +GM N+ +   +GL  +N ++TA +
Sbjct: 175 LGLMSSENRAIHALARTYPGGMSAFVAAMNAKARSLGMANSRFYEPTGLDPRN-VSTALE 233

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRN--RIITNHNKL----------LNKMHNIDGIK 241
                  L K       Y  IR+    N  +  T++ KL             + NI   K
Sbjct: 234 -------LGKMVQAASHYAKIRELTTSNYGQAYTSNGKLQQYKNTNVLVREGLMNITLQK 286

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           TGY R +G ++V   +    P+V VV+G  TS  R   A  L
Sbjct: 287 TGYIREAGRSMVLQAKMGQTPVVIVVLGSATSASRASDARSL 328


>gi|109240381|dbj|BAE96115.1| D, D-carboxypeptidase [Enterococcus raffinosus]
          Length = 355

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 106/236 (44%), Gaps = 39/236 (16%)

Query: 77  PASLTKMMTLYIIFEYLQ-SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           PAS  KM+T   + EY    +++ +  +I +  +    + S  +L +    T  Q ++AL
Sbjct: 125 PASTAKMITALTVLEYCSPEEEMRVGAEIEMIHS----DSSTAWLMKGDTLTVRQLLIAL 180

Query: 136 ITRSANDVSTAF----GEFISG-----SEKKFAILM---SNKAKKIGMQNTIYKNASGLH 183
           +  S ND +       G+ I+G     +++   I M   + KA+ IG+ ++ +    G  
Sbjct: 181 MLPSGNDAAYTLAVNTGKVIAGDNSLSNQQAIQIFMDKVNEKARAIGVTDSNFVVPDGYD 240

Query: 184 DKNQITTARDQAILGILLRKNFP----------QYYKYFSIRKFRYRNRIITNHNKLLNK 233
            + Q TTA D AI+     ++ P           Y K+ + R+  Y      N N+LL+ 
Sbjct: 241 AEGQYTTAYDLAIIAKACLED-PIISEIVASNTSYEKWPNGREVTYN-----NSNELLDP 294

Query: 234 MH-----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                   + G+KTG +   G  +V++     +  + VVMG  T + R Q ++ ++
Sbjct: 295 NSPYYRPEVIGLKTGTSSLGGACVVSAAVIDGETYICVVMG-STKESRFQDSVAIL 349


>gi|329942386|ref|ZP_08291196.1| D-alanyl-D-alanine carboxypeptidase family protein [Chlamydophila
           psittaci Cal10]
 gi|332287027|ref|YP_004421928.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila psittaci 6BC]
 gi|325506477|gb|ADZ18115.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila psittaci 6BC]
 gi|328815296|gb|EGF85284.1| D-alanyl-D-alanine carboxypeptidase family protein [Chlamydophila
           psittaci Cal10]
          Length = 398

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 16/174 (9%)

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           AL+  SAND + A     SGS  +F   +++  ++IG  +T + N  GLH  N  TTA D
Sbjct: 97  ALLICSANDAANALAIACSGSVVEFMKQLNDFLREIGCAHTHFNNPHGLHHPNHYTTAGD 156

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYR--------NRIITNHNKLLNKMHN-----IDGI 240
              L  ++R+   +      IR   Y+         RI+   NKL+            G 
Sbjct: 157 ---LTRIMREGLKEPLFRQVIRTTNYKMAPTNLSQERILNLTNKLILPGSTYYYPPALGG 213

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
           KTG T+++G N+V + +     I+ +  G     E  +  + L      ++ L+
Sbjct: 214 KTGTTKDAGKNLVFAAKKHGRSIITIAAGYSVMSELYEDVIALCEGVFNEQPLR 267


>gi|145506951|ref|XP_001439436.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124406620|emb|CAK72039.1| unnamed protein product [Paramecium tetraurelia]
          Length = 408

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 102/239 (42%), Gaps = 20/239 (8%)

Query: 62  NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHL-NTQIPVSKTAATQNPSKLYL 120
           N   M+G  Q + R  AS+TK+MT ++  +  Q   L L NT   V + A     +   L
Sbjct: 169 NGQLMSGQHQYKSRQMASITKIMTCWLALKLTQQYHLDLDNTYFTVPEKAERIGGTTAQL 228

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFG---EFISGSEKKFAILMSNKAKKIGMQNTIYK 177
                 +    +  L+  S ND + +     E   G +  F   M+  A+ IGM+ T Y 
Sbjct: 229 SSGDKLSIRDLLYGLMLPSGNDAAISIQHNFELYKGCD--FIQQMNQSAQDIGMEMTSYS 286

Query: 178 NASG----LHDKNQITTARDQAILGILLRKN--FPQYYK---YFS--IRKFRYRNRII-T 225
           N  G    L+ ++  ++A D  +L     +N  F    K   YFS    KF     I   
Sbjct: 287 NPHGMNSCLYHEDNYSSAYDIGVLTYNAMQNLQFASIVKTKIYFSEIEDKFGESKEIFWE 346

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N NK+L       G+KTG T+ +G  +V       +  + V++   +  +R Q  ++L+
Sbjct: 347 NTNKML--YQGFRGVKTGITKEAGPCVVEYFEDNQNSYIIVLLNCRSVDQRWQDTIKLL 403


>gi|3328163|gb|AAC32488.1| penicillin binding protein PbpA [Streptomyces clavuligerus ATCC
           27064]
          Length = 409

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 17/187 (9%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-----LYLKEKTYFTTEQGI 132
           AS  K+MT Y++      K+      I V      +  +K       L E   F+ +  +
Sbjct: 77  ASTAKIMTAYVLLRKHPLKRGEPGPTITVDAQTVAEGKAKDESRIEGLTEGQTFSQQDML 136

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAIL--MSNKAKKIGMQNTIYKNASGLHDKNQITT 190
             L+  S N++      + + ++ + A +  M+  AK +GM+NT+Y + SGL DK  ++T
Sbjct: 137 KMLMIPSGNNIGRLLARWSTKTDDQTAFVREMNEAAKDLGMKNTVYTDPSGL-DKGTVST 195

Query: 191 ARDQAILGILLRKNFPQYYKYFSI-----RKFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
           A DQ    + L +   +Y  +  +      +     RI  N+++L+     I GIKTG  
Sbjct: 196 AVDQ----LKLAEAVMEYDVFRDVVALPNAEIPGHGRIYNNNDRLILAGLGIVGIKTGSN 251

Query: 246 RNSGFNI 252
             +G  +
Sbjct: 252 TPAGGTL 258


>gi|89898744|ref|YP_515854.1| penicillin-binding protein 5 [Chlamydophila felis Fe/C-56]
 gi|89332116|dbj|BAE81709.1| penicillin-binding protein 5 [Chlamydophila felis Fe/C-56]
          Length = 433

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 16/174 (9%)

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           AL+  SAND +       S S  +F   ++   +++G ++T + N  GLH  N  TTARD
Sbjct: 132 ALLICSANDAANTLATACSESVAEFMKQLNTFLRELGCEHTHFNNPHGLHHPNHYTTARD 191

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYR--------NRIITNHNKLLNKMHN-----IDGI 240
              L  ++R+   +      IR   Y+         R++   NKL+            G 
Sbjct: 192 ---LTRIMRECLKEPLFRQVIRTTNYKMAPTNLSQERVLNLTNKLILPGSTYYYPPALGG 248

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
           KTG T+++G N++ + +     I+ +  G P   E  +  + L      +  L+
Sbjct: 249 KTGTTKDAGKNLIFAAKKHGRSIITIAAGYPAMGELYEDVIALCEGVFNEPLLR 302


>gi|218288202|ref|ZP_03492501.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218241561|gb|EED08734.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 402

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 82/198 (41%), Gaps = 31/198 (15%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTY------------ 125
           AS+TK+MT Y++   LQ   L L  Q P      T +  K+Y ++K              
Sbjct: 81  ASVTKVMTAYLV---LQKHPLQLGQQGP--SITITPDDVKVYERDKALGQSVVKVAAGEK 135

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            T  Q +  L+  S N++ T   ++  GS + F   M+  AK++GM  T Y + +G    
Sbjct: 136 ITEYQALQGLLLPSGNNMGTLLAKWCDGSVQAFVQEMNATAKRLGMTETHYADPTGYSPA 195

Query: 186 NQITTARDQ------AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDG 239
           +Q + A DQ      A+   + R+   +      +    Y    +  H  ++       G
Sbjct: 196 SQ-SDAVDQMKLFALAMENPVFRQIVGEAQAELPVAGLVYNVDSVVGHGTII-------G 247

Query: 240 IKTGYTRNSGFNIVTSLR 257
            KTG T  +G   V + R
Sbjct: 248 GKTGSTLEAGGCFVFAAR 265


>gi|213023592|ref|ZP_03338039.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 148

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 7/127 (5%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           L+   +S A +  A    + +++D    Q +T   + + R PASLTK+MT Y++   + S
Sbjct: 22  LAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDS 81

Query: 96  KKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            ++  +  + V + A A  NP     S ++LKE    +       LI  S ND   A  +
Sbjct: 82  HRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALAD 141

Query: 150 FISGSEK 156
           +I+G + 
Sbjct: 142 YIAGGQP 148


>gi|319793229|ref|YP_004154869.1| peptidase s11 D-alanyL-D-alanine carboxypeptidase 1 [Variovorax
           paradoxus EPS]
 gi|315595692|gb|ADU36758.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Variovorax
           paradoxus EPS]
          Length = 394

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 9/145 (6%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEY-LQSKKLHLNTQIPVSKTAATQ 113
           ++VID + +++   K D    P ASLTK+MT  +I E  L + +L   TQ  V     T+
Sbjct: 140 ALVIDQDTHEVLFSKNDHAVLPIASLTKLMTGLLISEARLPNDELITITQDDVD----TE 195

Query: 114 NPSKLYLKEKTYFTTEQGI-LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
             S+  L   T  +  + + LAL++ S N  + A G    G    F  +M+ KAK +GM+
Sbjct: 196 KGSRSRLTVGTMLSRGELLHLALMS-SENRAAHALGRTYPGGLSTFVSIMNAKAKMLGMK 254

Query: 173 NTIYKNASGLHDKNQITTARDQAIL 197
           +T Y   +GL  +NQ ++A+D A+L
Sbjct: 255 DTRYVEPTGLSSRNQ-SSAQDLALL 278


>gi|213619028|ref|ZP_03372854.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 272

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 102/231 (44%), Gaps = 35/231 (15%)

Query: 57  IVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +++D+N N++      D  R  AS+TK+MT  ++ +     +L L+    + K   +Q P
Sbjct: 1   MIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLD----ARLPLDE---ILKVDISQTP 53

Query: 116 SKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
               +  +    +E       +LAL++ S N  + +   +  G    F   M+ KAK +G
Sbjct: 54  EMKGVYSRVRLNSEISRKNMLLLALMS-SENRAAASLAHYYPGGYNAFIKAMNAKAKALG 112

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-------------F 217
           M +T +   +GL   N ++TARD   L ++  K +P   +  + R+             F
Sbjct: 113 MTHTRFVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTREDMATFSHPAYTLPF 170

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           R  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 171 RNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 215


>gi|84498026|ref|ZP_00996823.1| probable penicillin-binding protein dacb1
           (d-alanyl-d-alaninecarboxypeptidase) (dd-peptidase)
           (dd-carboxypeptidase) [Janibacter sp. HTCC2649]
 gi|84381526|gb|EAP97409.1| probable penicillin-binding protein dacb1
           (d-alanyl-d-alaninecarboxypeptidase) (dd-peptidase)
           (dd-carboxypeptidase) [Janibacter sp. HTCC2649]
          Length = 416

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 89/222 (40%), Gaps = 22/222 (9%)

Query: 40  IMISMASELHAKPKYSSI---VIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQS 95
           +++   + + A P  S +   + D +  ++   K       PAS  K +T   +   L+ 
Sbjct: 72  VIVDTPTGVPAPPDVSDVAWLIADADTGEILAAKNPHAHLLPASTLKTLTAIHLLPRLKP 131

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
             +   T +      +    +++ +     +T  Q   AL+  S ND +    E ++G  
Sbjct: 132 TAVRTATTL-----ESNAEGTRVGMVAGGTYTAAQLFQALVMSSGNDAAYGLAE-LNGGL 185

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
            K    ++  A ++G  +T+  + SGL    Q ++A D A+ G     N P Y K  S +
Sbjct: 186 AKTVTELNGLAAELGAHDTVVADPSGLDSPGQYSSAYDLALFGRAAIAN-PAYLKLASTK 244

Query: 216 KFRYRNR-----------IITNHNKLLNKMHNIDGIKTGYTR 246
              +               I NHN+LL       G+K G+T+
Sbjct: 245 TATFPAATSRSSRSRSSYAIGNHNRLLWNYPGTIGVKNGFTK 286


>gi|228475540|ref|ZP_04060258.1| penicillin binding protein 4 [Staphylococcus hominis SK119]
 gi|314935406|ref|ZP_07842759.1| penicillin-binding protein 4 [Staphylococcus hominis subsp. hominis
           C80]
 gi|228270322|gb|EEK11757.1| penicillin binding protein 4 [Staphylococcus hominis SK119]
 gi|313656741|gb|EFS20480.1| penicillin-binding protein 4 [Staphylococcus hominis subsp. hominis
           C80]
          Length = 383

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 23/207 (11%)

Query: 69  FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKT 124
           F+ ++   PASL+KMMTLY+  E +   KL L+ ++ ++      +   N + + L +  
Sbjct: 63  FQGNKEADPASLSKMMTLYLTLEAVHQGKLKLDDKVKITSAYDQLSKKPNLTSVPLNQGQ 122

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL-- 182
            +T +  +      S+N  +   GE +SG+   F   M+ +AK   M++T + N +G   
Sbjct: 123 IYTIKDLLTQAALPSSNSAAMILGEQVSGNTSTFTDKMNAQAKAFHMKHTHFVNPAGAAN 182

Query: 183 ------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
                        D    +T+ D AIL   L    P+      + +   +     N N  
Sbjct: 183 DLLGQQAPKKYRKDIYPKSTSEDIAILSHHLIAKHPKILNITQLSQDTQKGYTFNNTNLS 242

Query: 231 LNK----MHNIDGIKTGYTRNSGFNIV 253
           +      +   DG+KTG T + G+NI 
Sbjct: 243 IKHEPLYLKGTDGLKTG-TSDKGYNIA 268


>gi|328914259|gb|AEB55092.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila psittaci 6BC]
          Length = 412

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 16/174 (9%)

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           AL+  SAND + A     SGS  +F   +++  ++IG  +T + N  GLH  N  TTA D
Sbjct: 111 ALLICSANDAANALAIACSGSVVEFMKQLNDFLREIGCAHTHFNNPHGLHHPNHYTTAGD 170

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYR--------NRIITNHNKLLNKMHN-----IDGI 240
              L  ++R+   +      IR   Y+         RI+   NKL+            G 
Sbjct: 171 ---LTRIMREGLKEPLFRQVIRTTNYKMAPTNLSQERILNLTNKLILPGSTYYYPPALGG 227

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
           KTG T+++G N+V + +     I+ +  G     E  +  + L      ++ L+
Sbjct: 228 KTGTTKDAGKNLVFAAKKHGRSIITIAAGYSVMSELYEDVIALCEGVFNEQPLR 281


>gi|329910749|ref|ZP_08275375.1| Penicillin-binding protein precursor
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327546085|gb|EGF31152.1| Penicillin-binding protein precursor
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 351

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 94/212 (44%), Gaps = 18/212 (8%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           AS+TK+MT  ++ E  Q    +++  I V S     +  S   L+  +  +    +   +
Sbjct: 117 ASITKLMTSMVVVESNQ----NMDEMIEVTSDDIDREKNSSSRLRVGSILSRSNMLHIAL 172

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S N  ++A G    G    F   M+ KAK +GM +T Y +++GL   N + +A+D A 
Sbjct: 173 MSSENRAASALGRNYPGGLPAFVGAMNAKAKSLGMNDTRYVDSTGLSSHN-VASAQDLAK 231

Query: 197 LGILLRKN--FPQYY---KYF---SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
           L I  R++    QY    KY         +Y N   +NH  + N   +ID  KTGY   +
Sbjct: 232 LVIAARQHQIIGQYSTDTKYVVKPGSGALQYSN---SNH-LVGNPAWDIDLQKTGYINEA 287

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           G  +V     +  PIV V +     Q R   A
Sbjct: 288 GRCMVMLTNIEGRPIVMVFLDSKGKQSRTADA 319


>gi|93005508|ref|YP_579945.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Psychrobacter
           cryohalolentis K5]
 gi|92393186|gb|ABE74461.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Psychrobacter cryohalolentis K5]
          Length = 364

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 100/233 (42%), Gaps = 17/233 (7%)

Query: 72  DEPRYPASLTKMMTLYIIFEYL--QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE 129
           D  R  AS+TK+MT  ++ +      ++L L+ +  V    A+ N     LK        
Sbjct: 138 DIARPMASITKVMTAIVVLDAGLDMREELTLDPEDFVGPKRASSN-----LKSGDRLNRA 192

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           + +L  + +S N  + +      G    F   M+ KA+++GM    + + +GL  +N  +
Sbjct: 193 EMLLMALMKSENPAAKSLARNYPGGYSAFIRAMNRKAQELGMSTAFFGDPTGLDKRNVAS 252

Query: 190 T------ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--ITNHNKLLNKMHNIDGI- 240
           +       R      ++ R +  + Y +F +  F   NR     N + L+       GI 
Sbjct: 253 SNDLVKMVRAAGNYDVIRRFSTTKSYDFF-VSNFSSGNRTYKANNTSSLVRDGSYPIGIS 311

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
           KTG+   +G  +V   R  + P + V++G  +S  R   A  ++ S   ++T+
Sbjct: 312 KTGFINEAGRCVVMETRVNNRPAIIVILGANSSATRWGDAKNILNSLATRRTV 364


>gi|313847624|emb|CBY16612.1| putative D-alanyl-d-alanine carboxypeptidase [Chlamydophila
           psittaci RD1]
          Length = 433

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 16/174 (9%)

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           AL+  SAND + A     SGS  +F   +++  ++IG  +T + N  GLH  N  TTA D
Sbjct: 132 ALLICSANDAANALAIACSGSVVEFMKQLNDFLREIGCAHTHFNNPHGLHHPNHYTTAGD 191

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYR--------NRIITNHNKLLNKMHN-----IDGI 240
              L  ++R+   +      IR   Y+         RI+   NKL+            G 
Sbjct: 192 ---LTRIMREGLKEPLFRQVIRTTNYKMAPTNLSQERILNLTNKLILPGSTYYYPPALGG 248

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
           KTG T+++G N+V + +     I+ +  G     E  +  + L      ++ L+
Sbjct: 249 KTGTTKDAGKNLVFAAKKHGRSIITIAAGYSVMSELYEDVIALCEGVFNEQPLR 302


>gi|222159812|gb|ACM47285.1| D,D-carboxypeptidase VanYD [Enterococcus faecium]
          Length = 363

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 105/236 (44%), Gaps = 39/236 (16%)

Query: 77  PASLTKMMTLYIIFEYLQ-SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           PAS  KM+T   + EY    +++ +  +I +  +    + S  +L +    T  Q ++AL
Sbjct: 133 PASTAKMITALTVLEYCSPEEEMRVGAEIEMIHS----DSSTAWLMKGDTLTVRQLLIAL 188

Query: 136 ITRSANDVSTAF----GEFISGSE--------KKFAILMSNKAKKIGMQNTIYKNASGLH 183
           +  S ND +       G+ I+G          K F   ++ KA+++G+ ++ +    G  
Sbjct: 189 MLPSGNDAAYTLAVNTGKTIAGDNSLSNQQAIKIFMDKVNEKARELGVTDSNFVVPDGYD 248

Query: 184 DKNQITTARDQAILGILLRKNFP----------QYYKYFSIRKFRYRNRIITNHNKLLNK 233
            + Q TTA D AI+     +N P           Y K+ + R+  Y      N N+LL+ 
Sbjct: 249 AEGQYTTAYDLAIIAKACLEN-PIISEIVASNTSYEKWPNGREVTYN-----NSNELLDP 302

Query: 234 MH-----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                   + G+KTG +   G  +V++     +  + V MG  T + R Q +++++
Sbjct: 303 NSPYYRPEVIGLKTGTSSLGGACVVSAAVIDGETYICVAMG-STKESRFQDSVDIL 357


>gi|224826640|ref|ZP_03699741.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Lutiella
           nitroferrum 2002]
 gi|224601241|gb|EEG07423.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Lutiella
           nitroferrum 2002]
          Length = 290

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 119/267 (44%), Gaps = 32/267 (11%)

Query: 42  ISMASELHAKPKYSS-IVIDVNKNQMTGFKQ---DEPRYPASLTKMMTLYIIFEYLQSKK 97
           I +A+ +   P  +S  V+ +N        Q   D P   AS+TK+MT  +  +      
Sbjct: 30  IQVAANMTGAPHLNSHTVLVLNGANGEALYQKNTDLPLPFASITKLMTAMVTLD----AG 85

Query: 98  LHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
           L ++  I +++    +  N S       T    E  +LAL++ S N  + A      G  
Sbjct: 86  LSMDEPITITENEIDRLKNTSSRLSVGTTLPRREMLLLALMS-SENRAAAALARTYPGGT 144

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL-----GILLRKNFPQYYK 210
           + F   M+ KA+ +GM NT++ + +GL  +N   TA D A +     G  L + F    +
Sbjct: 145 QAFVAQMNRKARALGMNNTVFYDPTGLEVRN-TATAMDLARMVRAANGYPLIRTFTTTQE 203

Query: 211 Y----FSIRKFRYRNRIITNHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           +     S R   Y+     N N L+ +   +I   KTGY + +G  +V        P++ 
Sbjct: 204 HEVMSGSRRMLHYK-----NSNALVREGDWDISLQKTGYIQEAGRCMVLQTTVGSQPLII 258

Query: 266 VVM--GMPTSQERDQKALELITSFLEK 290
           V++  G P+++  D +A   I ++LE+
Sbjct: 259 VLLAAGAPSARVSDARA---IRNWLER 282


>gi|167569264|ref|ZP_02362138.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           oklahomensis C6786]
          Length = 379

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 111/244 (45%), Gaps = 34/244 (13%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK---- 108
           +  +++I+ N N++           AS+TK+MT  +           L+T+ P+S+    
Sbjct: 148 RTGTVLIEKNANRVVPI--------ASVTKLMTSMVA----------LDTRAPLSRPLRV 189

Query: 109 TAATQNPSKL---YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           +A  ++  KL    LK  +  +    +   +  S N  + A     +G    F   M+ K
Sbjct: 190 SAQDRDYEKLTGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYAGGRPAFVAAMNRK 249

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRN 221
           A+ +GM++T + NA+GL  +N ++TA D + L +     +P+  K FS       F  R 
Sbjct: 250 ARTLGMKHTHFVNATGLSPRN-VSTAHDLSRL-VAAASRYPR-IKTFSTDTSKTVFPGRG 306

Query: 222 RI-ITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           ++   N + L+     NI   KTG+   +G  +V     +  P+  V++G P S +    
Sbjct: 307 QLRYVNSDALVRAGDSNIMLQKTGFINEAGHCVVFRYAVRGRPVDIVLLGAPGSSDHIAD 366

Query: 280 ALEL 283
           A+++
Sbjct: 367 AMKI 370


>gi|317057306|ref|YP_004105773.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus
           albus 7]
 gi|315449575|gb|ADU23139.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus
           albus 7]
          Length = 483

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 108/244 (44%), Gaps = 49/244 (20%)

Query: 57  IVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           +V+D+N       +++ P  PASLTK+MT  ++ + L   +  L  ++    +A T+   
Sbjct: 62  VVVDINS------EKEVP--PASLTKLMTAVVLLDELGGDESTLRNKM---MSAGTEAFD 110

Query: 117 KLY--------LKEKTYFTTEQGILALI----TRSANDVSTAFGEFISGSEKKFAILMSN 164
           +LY        ++     +    + AL+      +AN ++   GE ISG    F  +M+ 
Sbjct: 111 ELYDTGAATADIQPNESVSAYDLLAALLIPSACEAANIIAINVGENISG----FVDMMNA 166

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY-------FSIRKF 217
           K  ++G+++T + NA GL  +   +TA+D + +       +P + +         +   F
Sbjct: 167 KVSELGLKHTHFSNAHGLFTQQNYSTAKDISTICRYALDKYPVFEELVGSPSFTMAPTDF 226

Query: 218 RYRNRIITNHNKLLNK-----MHNIDGIKTGYTRNSG-----FNIVTSLRYKDDPIVAVV 267
                 I + + ++N+          GIKTG T ++G     + +   +RY     + V 
Sbjct: 227 HPEGTYIASTDYMINEYTKYYYAKCRGIKTGTTESAGRCFASYAVSDGVRY-----LVVT 281

Query: 268 MGMP 271
           MG P
Sbjct: 282 MGAP 285


>gi|319944125|ref|ZP_08018403.1| D-alanyl-D-alanine endopeptidase PbpG [Lautropia mirabilis ATCC
           51599]
 gi|319742619|gb|EFV95028.1| D-alanyl-D-alanine endopeptidase PbpG [Lautropia mirabilis ATCC
           51599]
          Length = 454

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 113/250 (45%), Gaps = 32/250 (12%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAATQ 113
           ++V+D    ++   K      P ASLTK+MT  ++ +  Q     L+ +I + ++   T+
Sbjct: 220 ALVVDPRNGKILYDKNSSAVLPIASLTKLMTAMVVLDGGQP----LDEKIRIEAEDRDTE 275

Query: 114 NPSKLYLKEKTYFTTEQGI-LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
             S  +L   T  T  + + LAL++ S N  + A      G    F    + KA++IGM 
Sbjct: 276 RYSTSHLPVGTELTRAELMQLALMS-SENRAAHALARSYPGGVTAFVAAANRKAREIGMW 334

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR----------YRNR 222
           ++++ + +GL   N ++TARD A+L         +  +Y  IR+F           Y  R
Sbjct: 335 DSVFLDPTGLSASN-VSTARDLALL-------VARSARYPEIRRFSVASQLQVRTAYGTR 386

Query: 223 IITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           +    N L+ N+   +   KTG+   +G  +V   R     ++ V++    SQ R  +  
Sbjct: 387 VFHTTNPLVGNQQWGLTVQKTGFINEAGNCVVMQARVNGRQMIIVLL---DSQGRYSRVA 443

Query: 282 EL--ITSFLE 289
           +   I  FLE
Sbjct: 444 DANRIRRFLE 453


>gi|161502683|ref|YP_001569795.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864030|gb|ABX20653.1| hypothetical protein SARI_00730 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 315

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 101/232 (43%), Gaps = 33/232 (14%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N +++      D  R  AS+TK+MT  ++ +     +L L+    + K   +Q
Sbjct: 42  SAMIVDLNTHKVIYSNHPDLVRPIASITKLMTAMVVLD----ARLPLDE---ILKVDISQ 94

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +   +  G    F   M+ KAK 
Sbjct: 95  TPEMKGVYSRVRLNSEISRKNMLLLALMS-SENRAAASLAHYYPGGYNAFIKAMNAKAKA 153

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGI------------LLRKNFPQYYKYFSIRK 216
           +GM +T +   +GL   N ++TARD   L I            + R++   +        
Sbjct: 154 LGMTHTRFVEPTGLSIHN-VSTARDLTKLLIATKQYPLIGQLSITREDMATFSHPAYTLP 212

Query: 217 FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           FR  N ++   N       NI   KTG+T  +G  +V      + P+  VVM
Sbjct: 213 FRNTNHLVYRDN------WNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 258


>gi|222111139|ref|YP_002553403.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Acidovorax
           ebreus TPSY]
 gi|221730583|gb|ACM33403.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidovorax
           ebreus TPSY]
          Length = 360

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 93/209 (44%), Gaps = 21/209 (10%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFE-YLQSKKLHLNTQIPVSKTAATQ 113
           ++VID +  ++   K D    P ASLTK+MT  ++ E +L   +L   TQ  V     T+
Sbjct: 111 ALVIDQDTKEVLLSKNDHAVLPIASLTKLMTGLLVSEAHLPMDELITITQDDVD----TE 166

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   L   T  +  + +   +  S N  + A G    G    F   M+ KAK +GM +
Sbjct: 167 KGSGSRLAVGTTLSRGELLHLALMSSENRAAHALGRTFPGGLDTFVARMNAKAKLLGMAD 226

Query: 174 TIYKNASGLHDKNQITTARDQAIL------GILLRK--NFPQYYKYFSIRKFRYRNRIIT 225
           T +   +GL  +NQ ++A D A L        LLR+    P +      R  +Y N    
Sbjct: 227 TRFVEPTGLSSRNQ-SSAHDLATLVNVAHGDALLRELSTSPSHEVAIGRRTLQYNNT--- 282

Query: 226 NHNKLL-NKMHNIDGIKTGYTRNSGFNIV 253
             N+L+ +   +I   KTGY   +G  +V
Sbjct: 283 --NRLVKSPSWDIGLQKTGYISEAGRCLV 309


>gi|325266278|ref|ZP_08132957.1| D-alanyl-D-alanine carboxypeptidase [Kingella denitrificans ATCC
           33394]
 gi|324982240|gb|EGC17873.1| D-alanyl-D-alanine carboxypeptidase [Kingella denitrificans ATCC
           33394]
          Length = 317

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 99/218 (45%), Gaps = 17/218 (7%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQG 131
           R  AS++K+M   ++ +     +L +   I +++    +     S+L +   T  T  Q 
Sbjct: 99  RSIASISKLMAAMVVLD----ARLDMGQTITITEAEIDRLKGTGSRLSIG--TELTRTQL 152

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +   +  S N    A      G    F   M+ KA+ +GM++T +   +GL  +N ++TA
Sbjct: 153 LHLGLMSSENRAIHALARTYPGGMSAFVQAMNAKAQSLGMRHTRFYEPTGLDPRN-VSTA 211

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLLNKMH-NIDGIKTGYT 245
            D  ++     + +PQ  ++ + +  +      R +   N N L+ +   NI   KTGY 
Sbjct: 212 SDLLLMAQAADR-YPQIRQFSTAKSGQVYTSAGRVQQYQNSNALVREGRWNISVQKTGYI 270

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           R +G ++V   +   DPI+ VV+G  TS  R   A  L
Sbjct: 271 REAGRSMVLKTQMGRDPIIMVVLGSSTSTTRVNDARTL 308


>gi|320008978|gb|ADW03828.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           flavogriseus ATCC 33331]
          Length = 420

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 100/239 (41%), Gaps = 23/239 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKL-HLNTQIPVSKTAAT 112
           S IV D    Q+        R P AS  KM+    +   LQ K L HL T+  +S     
Sbjct: 76  SWIVADAEDGQVLASHNAHWRLPPASTLKMLFADTVLPALQPKTLTHLVTEDELSGVG-- 133

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           +  S + +KE   +T     L +  RS ND      E   G     A  M   A+++   
Sbjct: 134 EGSSLVGVKEDHSYTVHDLWLGVFLRSGNDAVHVLSEMYGGVPATVAA-MQRHAEELQAL 192

Query: 173 NTIYKNASGLHDKNQITTARDQAILG--ILLRKNFPQYYKYFS------IRKFRYR---- 220
           +T   +  G     Q+++A D  +     + + +F +Y    +      ++K + R    
Sbjct: 193 DTTVVSPDGYDAPRQVSSAYDLTLFARSGMQKADFREYAATATAEFPGEVKKGKKRKSFE 252

Query: 221 ----NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
               NR+IT  +  +     I G+K GYT ++G N  T +  +D  ++ V +  P+S+E
Sbjct: 253 IQNTNRLITG-DIGVEPYKGIAGVKNGYTTHAG-NTFTGIAERDGRVLLVTVMNPSSEE 309


>gi|213161813|ref|ZP_03347523.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 146

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 7/125 (5%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           L+   +S A +  A    + +++D    Q +T   + + R PASLTK+MT Y++   + S
Sbjct: 22  LAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDS 81

Query: 96  KKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            ++  +  + V + A A  NP     S ++LKE    +       LI  S ND   A  +
Sbjct: 82  HRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALAD 141

Query: 150 FISGS 154
           +I+G 
Sbjct: 142 YIAGG 146


>gi|260598596|ref|YP_003211167.1| D-alanyl-D-alanine endopeptidase [Cronobacter turicensis z3032]
 gi|260217773|emb|CBA32213.1| D-alanyl-D-alanine endopeptidase [Cronobacter turicensis z3032]
          Length = 269

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 27/229 (11%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+  N++      D  R  AS+TK+MT  ++ +   S  L     + +S T   +
Sbjct: 5   SAMIVDLRTNEVLFSSHPDLVRPIASITKVMTAMVVLD--ASLPLDEMLTVDISHTPEMK 62

Query: 114 NP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S++ L  +   + +  +L  +  S N  + +      G    F   M+ KAK +GM+
Sbjct: 63  GIYSRVRLNSQ--ISRKNMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAKALGMR 120

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-------------FRY 219
           NT +   +GL   N ++TARD   L ++  K +P   +  + R+             FR 
Sbjct: 121 NTRFVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTREEMATFANPAYTLPFRN 178

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            N ++   N       NI   KTG+T  +G  ++     K+ P+  VVM
Sbjct: 179 TNHLVYRDN------WNIQLTKTGFTNAAGHCLMMRTLIKNRPVTLVVM 221


>gi|254247777|ref|ZP_04941098.1| Peptidase S11 [Burkholderia cenocepacia PC184]
 gi|124872553|gb|EAY64269.1| Peptidase S11 [Burkholderia cenocepacia PC184]
          Length = 388

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 104/247 (42%), Gaps = 32/247 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N  +    K      P AS++K+MT  ++ +   
Sbjct: 117 VGQAFGLHDTPDALALRSSVAYVVDQNSGEPLFDKNSHAVVPIASISKLMTAMVVLD--- 173

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  +  Q+ V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 174 -AKSPMTDQLEVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPG 232

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM +T ++N++GL   N +++ARD       L K     Y+Y  
Sbjct: 233 GRPAFIAAMNAKAKALGMTDTHFENSTGLSSSN-VSSARD-------LVKMVNAAYQYPM 284

Query: 214 IRKFRY----------RNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           IR+F            RN +  + N L+  N   +I   KTG+   +G  +V        
Sbjct: 285 IRQFSTDRTYEVYTGKRNLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGR 344

Query: 262 PIVAVVM 268
           P+V V++
Sbjct: 345 PMVMVLL 351


>gi|156933292|ref|YP_001437208.1| D-alanyl-D-alanine endopeptidase [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156531546|gb|ABU76372.1| hypothetical protein ESA_01104 [Cronobacter sakazakii ATCC BAA-894]
          Length = 310

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 27/229 (11%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+  N++      D  R  AS+TK+MT  ++ +   S  L     + +S T   +
Sbjct: 46  SAMIVDLRTNEVLFSSHPDLVRPIASITKVMTAMVVLD--ASLPLDEMLTVDISHTPEMK 103

Query: 114 NP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S++ L  +   + +  +L  +  S N  + +      G    F   M+ KAK +GM+
Sbjct: 104 GIYSRVRLNSQ--ISRKNMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAKALGMR 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-------------FRY 219
           NT +   +GL   N ++TARD   L ++  K +P   +  + R+             FR 
Sbjct: 162 NTHFVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTREEMATFSNPTYTLPFRN 219

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            N ++   N       NI   KTG+T  +G  ++     K+ P+  VVM
Sbjct: 220 TNHLVYRDN------WNIQLTKTGFTNAAGHCLMMRTLIKNRPVTLVVM 262


>gi|121594143|ref|YP_986039.1| murein-DD-endopeptidase [Acidovorax sp. JS42]
 gi|120606223|gb|ABM41963.1| murein-DD-endopeptidase [Acidovorax sp. JS42]
          Length = 360

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 93/209 (44%), Gaps = 21/209 (10%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFE-YLQSKKLHLNTQIPVSKTAATQ 113
           ++VID +  ++   K D    P ASLTK+MT  ++ E +L   +L   TQ  V     T+
Sbjct: 111 ALVIDQDTKEVLLSKNDHAVLPIASLTKLMTGLLVSEAHLPMDELITITQDDVD----TE 166

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   L   T  +  + +   +  S N  + A G    G    F   M+ KAK +GM +
Sbjct: 167 KGSGSRLAVGTTLSRGELLHLALMSSENRAAHALGRTFPGGLDTFVARMNAKAKLLGMAD 226

Query: 174 TIYKNASGLHDKNQITTARDQAIL------GILLRK--NFPQYYKYFSIRKFRYRNRIIT 225
           T +   +GL  +NQ ++A D A L        LLR+    P +      R  +Y N    
Sbjct: 227 TRFVEPTGLSSRNQ-SSAHDLATLVNVAHGDALLRELSTSPSHEVAVGRRTLQYNNT--- 282

Query: 226 NHNKLL-NKMHNIDGIKTGYTRNSGFNIV 253
             N+L+ +   +I   KTGY   +G  +V
Sbjct: 283 --NRLVKSPSWDIGLQKTGYISEAGRCLV 309


>gi|300786276|ref|YP_003766567.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei
           U32]
 gi|299795790|gb|ADJ46165.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei
           U32]
          Length = 307

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 93/200 (46%), Gaps = 14/200 (7%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY----LKEKTYFTTEQGIL 133
           AS+TK+MT Y++ +           ++ V + A  +  S       ++    F+ E+ +L
Sbjct: 78  ASVTKVMTAYVVLKDHPLGADEAGPEVTVDEQAEAEATSAEESSAPVRAGRRFS-ERDLL 136

Query: 134 AL-ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           AL +  S N+V+     + +GS+  F   M+ +A  +GM +T Y  ASG+ D    +TA 
Sbjct: 137 ALMLVPSGNNVARLLARWDAGSQDAFVAKMNREAAALGMTSTSYTGASGVEDST-TSTAT 195

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           DQ  L     KN P      +    R       + N N LL     + G+KTG +  +G 
Sbjct: 196 DQLRLAREAMKN-PVIRAIAATPSLRIDGVPGAVVNTNTLLGH-DGVIGLKTGSSTAAGG 253

Query: 251 NIVTSLRYKDDPIVAVVMGM 270
            ++ + + +D    A+++G+
Sbjct: 254 ALMWAAQARDG---ALILGV 270


>gi|326442723|ref|ZP_08217457.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 824

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 10/190 (5%)

Query: 74  PRYPASLTKMMTLYIIFEY------LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           PR  AS+TK MT Y+I          Q  ++ ++ +      +   + S + +K    +T
Sbjct: 493 PRPIASVTKAMTAYVILREKPLTGKGQGDRITIDQRTEDEYHSGKNSESVVEVKAGQKYT 552

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
             Q +  L+  SAN+V+     + +GSE  F   M   A  +GM++T+Y + SGL     
Sbjct: 553 QRQLLELLMIPSANNVARLLARWHAGSEAAFVKKMQAAADDLGMKDTVYTDPSGLR-STT 611

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYT 245
           ++T  DQ  L     ++   + +  +  K +     R I N       +  + GIKTG +
Sbjct: 612 VSTPLDQLKLAEAAMQDE-VFREIVNTTKLKVPGIERTIYNSADKALLLDGVGGIKTGSS 670

Query: 246 RNSGFNIVTS 255
             +G N++ S
Sbjct: 671 TPAGGNLLWS 680


>gi|312140773|ref|YP_004008109.1| d-alanyl-d-alanine carboxypeptidase [Rhodococcus equi 103S]
 gi|311890112|emb|CBH49430.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus equi
           103S]
          Length = 444

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 84/210 (40%), Gaps = 27/210 (12%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           ++ D++  Q+   K    RY PAS  K++   +  +     +L L+T I  S  AA+   
Sbjct: 125 VLSDLDTGQVLAAKDPHGRYRPASTIKVLLALVALD-----ELDLDTTIVASPEAASMEG 179

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S + L     ++  Q +  L+ RS ND + A  + + G +   A  M+ KA  +G  +T 
Sbjct: 180 SSVGLGAGGTYSNLQLMQGLVMRSGNDAAQALAQQLGGEQATVAK-MNAKAASLGASDTR 238

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYRNR----------- 222
             + SGL      T+  D   L +  R     P +    +     +              
Sbjct: 239 TASVSGLDGPGMSTSPYD---LALFFRAAMQNPTFAGLITTDTVMFPGHPADPTKPDDKP 295

Query: 223 ----IITNHNKLLNKMHNIDGIKTGYTRNS 248
                I N N+LL       G KTGYT ++
Sbjct: 296 VDPYPIFNDNQLLANYPGALGGKTGYTDDA 325


>gi|324497314|gb|ADY39464.1| D-alanyl-D-alanine endopeptidase [bacterium enrichment culture
           clone P69-9E]
          Length = 258

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 89/209 (42%), Gaps = 34/209 (16%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG-----I 132
           AS+TK+MT  ++ +      L L+ ++   K   +  P    +  +    +E       +
Sbjct: 18  ASITKLMTAMVVLD----AHLPLDEKL---KVDISHTPEMKGIYSRVRLNSEISRKNMLL 70

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           LAL++ S N  + +      G    F   M+ KAK +GM NT Y   +GL   N ++TAR
Sbjct: 71  LALMS-SENRAAASLAHHYPGGYDAFIRAMNAKAKALGMTNTHYVEPTGL-SINNVSTAR 128

Query: 193 DQAILGILLRKNFPQYYKYFSIRK-------------FRYRNRIITNHNKLLNKMHNIDG 239
           D   L ++  K +P   +  + R+             FR  N ++   N       NI  
Sbjct: 129 DLTKL-LIASKQYPLIGQLSTTREEMATFANPAYTLPFRNTNHLVYRDN------WNIQL 181

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            KTG+T  +G  +V    +   P+  VVM
Sbjct: 182 TKTGFTNAAGHCLVMRTVFNGKPVALVVM 210


>gi|206560567|ref|YP_002231332.1| D-alanyl-D-alanine endopeptidase [Burkholderia cenocepacia J2315]
 gi|198036609|emb|CAR52506.1| D-alanyl-D-alanine endopeptidase (penicillin-binding protein
           precursor) [Burkholderia cenocepacia J2315]
          Length = 388

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 104/247 (42%), Gaps = 32/247 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N  +    K      P AS++K+MT  ++ +   
Sbjct: 117 VGQAFGLHDTPDALALRSSVAYVVDQNSGEPLFDKNSHAVVPIASISKLMTAMVVLD--- 173

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  +  Q+ V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 174 -SKSPMTDQLEVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPG 232

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM +T ++N++GL   N +++ARD       L K     Y+Y  
Sbjct: 233 GRPAFIAAMNAKAKSLGMTDTHFENSTGLSSSN-VSSARD-------LVKMVNAAYQYPM 284

Query: 214 IRKFRY----------RNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           IR+F            RN +  + N L+  N   +I   KTG+   +G  +V        
Sbjct: 285 IRQFSTDRTYEVYTGKRNLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGR 344

Query: 262 PIVAVVM 268
           P+V V++
Sbjct: 345 PMVMVLL 351


>gi|294815047|ref|ZP_06773690.1| Penicillin binding protein PbpA [Streptomyces clavuligerus ATCC
           27064]
 gi|294327646|gb|EFG09289.1| Penicillin binding protein PbpA [Streptomyces clavuligerus ATCC
           27064]
          Length = 698

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 17/187 (9%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-----LYLKEKTYFTTEQGI 132
           AS  K+MT Y++      K+      I V      +  +K       L E   F+ +  +
Sbjct: 366 ASTAKIMTAYVLLRKHPLKRGEPGPTITVDAQTVAEGKAKDESRIEGLTEGQTFSQQDML 425

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAIL--MSNKAKKIGMQNTIYKNASGLHDKNQITT 190
             L+  S N++      + + ++ + A +  M+  AK +GM+NT+Y + SGL DK  ++T
Sbjct: 426 KMLMIPSGNNIGRLLARWSTKTDDQTAFVREMNEAAKDLGMKNTVYTDPSGL-DKGTVST 484

Query: 191 ARDQAILGILLRKNFPQYYKYFSI-----RKFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
           A DQ    + L +   +Y  +  +      +     RI  N+++L+     I GIKTG  
Sbjct: 485 AVDQ----LKLAEAVMEYDVFRDVVALPNAEIPGHGRIYNNNDRLILAGLGIVGIKTGSN 540

Query: 246 RNSGFNI 252
             +G  +
Sbjct: 541 TPAGGTL 547


>gi|107028687|ref|YP_625782.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           cenocepacia AU 1054]
 gi|116690154|ref|YP_835777.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           cenocepacia HI2424]
 gi|170733486|ref|YP_001765433.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           cenocepacia MC0-3]
 gi|105897851|gb|ABF80809.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Burkholderia cenocepacia AU 1054]
 gi|116648243|gb|ABK08884.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Burkholderia cenocepacia HI2424]
 gi|169816728|gb|ACA91311.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           cenocepacia MC0-3]
          Length = 388

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 104/247 (42%), Gaps = 32/247 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N  +    K      P AS++K+MT  ++ +   
Sbjct: 117 VGQAFGLHDTPDALALRSSVAYVVDQNSGEPLFDKNSHAVVPIASISKLMTAMVVLD--- 173

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  +  Q+ V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 174 -AKSPMTDQLEVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPG 232

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM +T ++N++GL   N +++ARD       L K     Y+Y  
Sbjct: 233 GRPAFIAAMNAKAKALGMTDTHFENSTGLSSSN-VSSARD-------LVKMVNAAYQYPM 284

Query: 214 IRKFRY----------RNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           IR+F            RN +  + N L+  N   +I   KTG+   +G  +V        
Sbjct: 285 IRQFSTDRTYEVYTGKRNLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGR 344

Query: 262 PIVAVVM 268
           P+V V++
Sbjct: 345 PMVMVLL 351


>gi|152999492|ref|YP_001365173.1| D-alanyl-D-alanine endopeptidase [Shewanella baltica OS185]
 gi|160874112|ref|YP_001553428.1| D-alanyl-D-alanine endopeptidase [Shewanella baltica OS195]
 gi|217972168|ref|YP_002356919.1| D-alanyl-D-alanine endopeptidase [Shewanella baltica OS223]
 gi|304410998|ref|ZP_07392614.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
           baltica OS183]
 gi|307301879|ref|ZP_07581637.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
           baltica BA175]
 gi|151364110|gb|ABS07110.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
           baltica OS185]
 gi|160859634|gb|ABX48168.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
           baltica OS195]
 gi|217497303|gb|ACK45496.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
           baltica OS223]
 gi|304350533|gb|EFM14935.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
           baltica OS183]
 gi|306913917|gb|EFN44338.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
           baltica BA175]
 gi|315266344|gb|ADT93197.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
           baltica OS678]
          Length = 321

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 33/217 (15%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N++          P AS+TK+MT  +  +     KL ++ ++ V+    T+
Sbjct: 56  SAMVVDLKTNEVLYSSNPNAVVPIASVTKLMTAMVTLD----AKLAMDEKLAVN-INDTK 110

Query: 114 NPSKLYLKEK--TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +Y + +  +  + +  +L  +  S N  + +      G  K F   M+ KAK +GM
Sbjct: 111 EMRGVYSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGHKAFIKAMNAKAKALGM 170

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLR--KNFPQYYKYFSIRK------------- 216
           +NT Y   +GL  KN +++A D   L +LL+  + +P   +  S  K             
Sbjct: 171 KNTRYVEPTGLSYKN-VSSASD---LIVLLKASEGYPMLGQLSSTEKKTVTFAKPRYSLD 226

Query: 217 FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
           FR  NR++   N       NI   KTG+T  +G  +V
Sbjct: 227 FRNTNRLVYKDN------WNIHLTKTGFTNEAGHCLV 257


>gi|116490774|ref|YP_810318.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni PSU-1]
 gi|116091499|gb|ABJ56653.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni PSU-1]
          Length = 423

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 108/247 (43%), Gaps = 39/247 (15%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAAT 112
           +IVID    Q+   K  + RYP AS++K++  Y++ + ++  K+ LNT+  IP    A +
Sbjct: 41  AIVIDEKTGQILASKNADKRYPIASISKLLIAYLVEKRIKENKISLNTKVKIPSGIVAIS 100

Query: 113 QNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN------ 164
           Q  +   + L     +T ++ +   +  S N  + A G  I+GS  K    M        
Sbjct: 101 QETTITNVPLSATRSYTIKELLEDALLPSGNGAAIALGAAITGSVSKTETAMEKLLSSWN 160

Query: 165 -KAKKI----GMQNT---IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            K  KI    G+ N     YK+ S   D     +A++ A +   L  +FP      SIRK
Sbjct: 161 IKGVKIYSPAGLTNGEMGAYKDKSASDDAENKLSAKELAEVSRHLMLDFP------SIRK 214

Query: 217 FRYRNR-----------IITNHNKLLNKM---HNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
              ++             I N N+LL  +   +   GIKTG   + G N +   R K   
Sbjct: 215 ITDKSSAVVSSTSGSSYTIENTNQLLKNIKSPYKFTGIKTGSAESIGGNFIGETRIKGQK 274

Query: 263 IVAVVMG 269
           ++ VV+G
Sbjct: 275 VITVVLG 281


>gi|298246708|ref|ZP_06970513.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
           racemifer DSM 44963]
 gi|297549367|gb|EFH83233.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
           racemifer DSM 44963]
          Length = 338

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 102/246 (41%), Gaps = 22/246 (8%)

Query: 39  IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKK 97
           + ++  A  + AK  Y   ++D++   +   +  E   P AS TK+MT  ++ E    KK
Sbjct: 69  LTVMGGAPPIDAKAAY---LLDIDTGNVLDDQNAEQPLPMASTTKIMTALVVIEAANLKK 125

Query: 98  -LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
              ++  IP  +     N S   L      T    + AL+  S +D +      ++GS  
Sbjct: 126 EATVSPDIP--QYVFQHNGSNAKLMPGDTLTINDLLYALMLPSGDDAAIVLARAVAGSSD 183

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGL--HDKN------QITTARDQAILGILLRKNFPQY 208
            F  +M+  A +  +  T + N  GL  +D N        ++ARD A L      N P +
Sbjct: 184 AFVGMMNRFALRHHLFQTHFINPDGLTYYDANGNPLPGHYSSARDLARLTAYALSN-PLF 242

Query: 209 YKYFSIRKF------RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
            K    R++      ++      N N L N      G+KTG+T  +G+ +V S       
Sbjct: 243 AKIVGTRQYDLAWSPKHGAYHWANTNDLFNLYPATTGVKTGFTNEAGYCLVFSATRDHHH 302

Query: 263 IVAVVM 268
           +V  V+
Sbjct: 303 LVGTVL 308


>gi|145503045|ref|XP_001437500.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124404650|emb|CAK70103.1| unnamed protein product [Paramecium tetraurelia]
          Length = 458

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 106/239 (44%), Gaps = 51/239 (21%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNT-QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           AS+TK+MT Y   ++L+ K++ + + +I +   A   + +  +L         Q + A++
Sbjct: 212 ASITKVMTCYTTLKFLEEKRIDMESIRIKIPGHAECIDGTSAFLNAGGIMNVRQLLFAMM 271

Query: 137 TRSANDVS------TAF------------GEFISGS---EK-------KFAILMSNKAKK 168
             S ND +       AF            G +I      EK       +F  +M+N A+ 
Sbjct: 272 LPSGNDAALVLSYAIAFLKTCDSIQRYCNGHYIDCELEIEKNKFQLRTQFLQMMNNHAEN 331

Query: 169 IGMQNTIYKNASGLHDKNQITTARD--QAILGILLRKNF-----PQYYKYFSIRK----- 216
           + M  T Y +  GL+D   ++ A D  + +   +  K F      + +K +++ +     
Sbjct: 332 LKMDKTNYNSVHGLNDTLNVSCALDIFKLVEECIKIKEFMEIVNTRCFKTYAVTEQGNQG 391

Query: 217 --FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
             ++++N      NKLL K    +GIKTG T N+G     S  YK D   A+V+ + +S
Sbjct: 392 TYYKWKNT-----NKLLKK-EGWEGIKTGITSNAG--PCFSGYYKTDDFDAIVIVLQSS 442


>gi|126175583|ref|YP_001051732.1| D-alanyl-D-alanine endopeptidase [Shewanella baltica OS155]
 gi|125998788|gb|ABN62863.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Shewanella baltica OS155]
          Length = 321

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 33/217 (15%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N++          P AS+TK+MT  +  +     KL ++ ++ V+    T+
Sbjct: 56  SAMVVDLKTNEVLYSSNPNAVVPIASVTKLMTAMVTLD----AKLAMDEKLAVN-INDTK 110

Query: 114 NPSKLYLKEK--TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +Y + +  +  + +  +L  +  S N  + +      G  K F   M+ KAK +GM
Sbjct: 111 EMRGVYSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGHKAFIKAMNAKAKALGM 170

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLR--KNFPQYYKYFSIRK------------- 216
           +NT Y   +GL  KN +++A D   L +LL+  + +P   +  S  K             
Sbjct: 171 KNTRYVEPTGLSYKN-VSSASD---LIVLLKASEGYPMLGQLSSTEKKTVTFAKPRYSLD 226

Query: 217 FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
           FR  NR++   N       NI   KTG+T  +G  +V
Sbjct: 227 FRNTNRLVYKDN------WNIHLTKTGFTNEAGHCLV 257


>gi|254387565|ref|ZP_05002804.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
 gi|326443414|ref|ZP_08218148.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
 gi|197701291|gb|EDY47103.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
          Length = 693

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 17/187 (9%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-----LYLKEKTYFTTEQGI 132
           AS  K+MT Y++      K+      I V      +  +K       L E   F+ +  +
Sbjct: 361 ASTAKIMTAYVLLRKHPLKRGEPGPTITVDAQTVAEGKAKDESRIEGLTEGQTFSQQDML 420

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAIL--MSNKAKKIGMQNTIYKNASGLHDKNQITT 190
             L+  S N++      + + ++ + A +  M+  AK +GM+NT+Y + SGL DK  ++T
Sbjct: 421 KMLMIPSGNNIGRLLARWSTKTDDQTAFVREMNEAAKDLGMKNTVYTDPSGL-DKGTVST 479

Query: 191 ARDQAILGILLRKNFPQYYKYFSI-----RKFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
           A DQ    + L +   +Y  +  +      +     RI  N+++L+     I GIKTG  
Sbjct: 480 AVDQ----LKLAEAVMEYDVFRDVVALPNAEIPGHGRIYNNNDRLILAGLGIVGIKTGSN 535

Query: 246 RNSGFNI 252
             +G  +
Sbjct: 536 TPAGGTL 542


>gi|300715952|ref|YP_003740755.1| penicillin-binding protein 7 (D-alanyl-D-alanine-endopeptidase)
           [Erwinia billingiae Eb661]
 gi|299061788|emb|CAX58904.1| Penicillin-binding protein 7 (D-alanyl-D-alanine-endopeptidase)
           [Erwinia billingiae Eb661]
          Length = 315

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 101/227 (44%), Gaps = 23/227 (10%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+N N++      D  R  AS+TK+MT+ +  +        LN  I       + 
Sbjct: 46  SAMIVDLNTNKVIFASHPDLVRPMASITKLMTVMVTLDAHLPMDEMLNVDI-------SH 98

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    +E       +LAL++ S N  + +      G    F   M+ KA+ 
Sbjct: 99  TPEMRGVYSRVRLNSEISRKNMMLLALMS-SENRAAASLAHHYPGGYDAFIRAMNAKAQS 157

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRII 224
           +GM +T Y   +GL  +N ++TARD   L ++  K +P   +  +  +    F+  N  +
Sbjct: 158 LGMTHTHYVEPTGLSIEN-VSTARDLTKL-LIATKRYPLIGQLSTTHEDMAVFKSPNYTL 215

Query: 225 T--NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              N N L+ +   NI   KTG+T  +G  +V        P+  VVM
Sbjct: 216 PFRNTNHLVYRQDWNIQLTKTGFTNEAGHCLVMRTVINQRPVALVVM 262


>gi|115352221|ref|YP_774060.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ambifaria AMMD]
 gi|172061088|ref|YP_001808740.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ambifaria MC40-6]
 gi|115282209|gb|ABI87726.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Burkholderia ambifaria AMMD]
 gi|171993605|gb|ACB64524.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ambifaria MC40-6]
          Length = 384

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 104/247 (42%), Gaps = 32/247 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N  +    K      P AS++K+MT  ++ +   
Sbjct: 113 VGQAFGLHDTPDALALRSSVAYVVDQNTGEPLFDKNSHAVVPIASISKLMTAMVVLD--- 169

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  +  Q+ V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 170 -AKSPMTDQLEVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPG 228

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM +T ++N++GL   N +++ARD       L K     Y+Y  
Sbjct: 229 GRPAFIAAMNAKAKSLGMNDTHFENSTGLSSSN-VSSARD-------LVKMVNAAYQYPM 280

Query: 214 IRKFRY----------RNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           IR+F            RN +  + N L+  N   +I   KTG+   +G  +V        
Sbjct: 281 IRQFSTDRTYDVYTGKRNLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGR 340

Query: 262 PIVAVVM 268
           P+V V++
Sbjct: 341 PMVMVLL 347


>gi|331014403|gb|EGH94459.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 311

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 106/226 (46%), Gaps = 21/226 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  +++      +   P AS+TK+MT  I+ +  QS    ++  IPV+    +Q
Sbjct: 44  SAMVVDLQTDKVLYSSNPDVIVPIASVTKLMTAMIVLDAKQS----MDEVIPVN---ISQ 96

Query: 114 NPSKLYLKEKTYFTTEQG----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +  +    +E      +L  +  S N  + +      G    F + M+ KAK +
Sbjct: 97  TPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 156

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRII- 224
           GM++T Y   + L   N ++TARD   L +  RK +P   +  +  +    FR    I+ 
Sbjct: 157 GMKHTAYVEPTSLSVYN-VSTARDLTKLVMAARK-YPLLSELSTTEQKTVTFRKPTYILG 214

Query: 225 -TNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            +N + L+ K + +I   KTG+T  +G  +V      + P+  V++
Sbjct: 215 FSNTDHLVRKENWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVIL 260


>gi|226941642|ref|YP_002796716.1| PbpG [Laribacter hongkongensis HLHK9]
 gi|226716569|gb|ACO75707.1| PbpG [Laribacter hongkongensis HLHK9]
          Length = 286

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 27/226 (11%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGILAL 135
           AS+TK+MT  ++ +  Q     L+  I +S+    +  N S            E  +LAL
Sbjct: 67  ASITKLMTAMVMLDSGQP----LDELITISEAEIDRLKNTSSRLAVGSVLSRREMLLLAL 122

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           ++ S N  + +      G    F   M+ KA+++GM +T + + +GL  +N  +TA D  
Sbjct: 123 MS-SENRAAASLARTSPGGTSAFVSRMNQKARQLGMHSTRFYDPTGLDSRN-TSTAED-- 178

Query: 196 ILGILLRKNFPQYYKYFSIRK--------FRYRNRIIT--NHNKLLNKMHNIDGI-KTGY 244
                L +     Y+Y  IR+           RNR++   N N L+ +     G+ KTGY
Sbjct: 179 -----LARMVAAAYRYPLIREDTTTTDQQVYARNRMLQYRNSNALVREGQWQIGLSKTGY 233

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           T+ +G  +V        P++ V +    S  R   A   I ++LEK
Sbjct: 234 TQEAGRCLVMMATVGSTPLIMVFLDSEGSSARINDARN-IKTWLEK 278


>gi|118587105|ref|ZP_01544535.1| serine-type D-Ala-D-Ala carboxypeptidase [Oenococcus oeni ATCC
           BAA-1163]
 gi|118432515|gb|EAV39251.1| serine-type D-Ala-D-Ala carboxypeptidase [Oenococcus oeni ATCC
           BAA-1163]
          Length = 423

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 108/247 (43%), Gaps = 39/247 (15%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAAT 112
           +IVID    Q+   K  + RYP AS++K++  Y++ + ++  K+ LNT+  IP    A +
Sbjct: 41  AIVIDEKTGQILASKNADKRYPIASISKLLIAYLVEKRIKENKISLNTKVKIPSGIVAIS 100

Query: 113 QNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN------ 164
           Q  +   + L     +T ++ +   +  S N  + A G  I+GS  K    M        
Sbjct: 101 QETTITNVPLSATRSYTIKELLEDALLPSGNGAAIALGAAITGSVSKTETAMEKLLSSWN 160

Query: 165 -KAKKI----GMQNT---IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            K  KI    G+ N     YK+ S   D     +A++ A +   L  +FP      SIRK
Sbjct: 161 IKGVKIYSPAGLTNGEMGAYKDKSASDDAENKLSAKELAEVSRHLMLDFP------SIRK 214

Query: 217 FRYRNR-----------IITNHNKLLNKM---HNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
              ++             I N N+LL  +   +   GIKTG   + G N +   R K   
Sbjct: 215 ITDKSSAVVSSTSGSSYTIENTNQLLKNIKSPYKFTGIKTGSAESIGGNFIGETRIKGQK 274

Query: 263 IVAVVMG 269
           ++ VV+G
Sbjct: 275 VITVVLG 281


>gi|170025107|ref|YP_001721612.1| D-alanyl-D-alanine endopeptidase [Yersinia pseudotuberculosis
           YPIII]
 gi|169751641|gb|ACA69159.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Yersinia
           pseudotuberculosis YPIII]
          Length = 323

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 19/225 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N++      +   P AS+TK+MT  ++ +     KL L+  + V     T+
Sbjct: 58  SAMVVDLQTNKVIYANNADKVVPIASITKLMTAMVVLD----AKLPLDEILSVD-IDQTK 112

Query: 114 NPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               ++  ++  +  + +  +L  +  S N  + +      G    F   M+ KAK +GM
Sbjct: 113 ELKGVFSRVRVNSEISRKDMLLLTLMSSENRAAASLAHHYPGGYNAFIKAMNAKAKSLGM 172

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS----IRKFRYRNRII--- 224
            +T Y   +GL   N ++TARD A L ++  K +P   +  +    +  FR  N  +   
Sbjct: 173 SSTHYVEPTGL-SINNVSTARDLAKL-LMATKQYPLIGQLSTTTEKMATFREPNYTLPFR 230

Query: 225 -TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            TNH  + N   NI   KTG+T  +G  +V        P+  VV+
Sbjct: 231 NTNH-LVYNDKWNIQLTKTGFTNQAGHCLVMRTVIGKRPVALVVL 274


>gi|119897114|ref|YP_932327.1| D-alanyl-D-alanine carboxypeptidase [Azoarcus sp. BH72]
 gi|119669527|emb|CAL93440.1| D-alanyl-D-alanine carboxypeptidase [Azoarcus sp. BH72]
          Length = 280

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 90/200 (45%), Gaps = 18/200 (9%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILA 134
           AS+TK+MT  ++ +      L LN ++ +S           S+L L   T  T E+ +  
Sbjct: 54  ASITKLMTAMVVLD----AGLGLNDELAISDADIDTLKGTGSRLVLG--TRLTREEMLRL 107

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  ++A      G E+ F   M+ KA+ +G  +T Y +++GL+  N +++ RD 
Sbjct: 108 ALMSSENRAASALARHYPGGERAFVEAMNVKARLLGAWDTRYYDSTGLNPAN-VSSPRDL 166

Query: 195 AILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLL-NKMHNIDGIKTGYTRNS 248
           A + +     +P   + FS    R+     R     N N L+ +    I   KTGY   +
Sbjct: 167 AKV-VSAAATYP-LIREFSTTSERFVDIGGRTLRFANTNSLVRSPDWEIAVSKTGYISEA 224

Query: 249 GFNIVTSLRYKDDPIVAVVM 268
           G  +V        P+V V+M
Sbjct: 225 GRCLVMQAWMHHQPVVIVLM 244


>gi|153948552|ref|YP_001401770.1| D-alanyl-D-alanine endopeptidase [Yersinia pseudotuberculosis IP
           31758]
 gi|152960047|gb|ABS47508.1| penicillin-binding protein 7 [Yersinia pseudotuberculosis IP 31758]
          Length = 311

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 19/225 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N++      +   P AS+TK+MT  ++ +     KL L+  + V     T+
Sbjct: 46  SAMVVDLQTNKVIYANNADKVVPIASITKLMTAMVVLD----AKLPLDEILSVD-IDQTK 100

Query: 114 NPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               ++  ++  +  + +  +L  +  S N  + +      G    F   M+ KAK +GM
Sbjct: 101 ELKGVFSRVRVNSEISRKDMLLLTLMSSENRAAASLAHHYPGGYNAFIKAMNAKAKSLGM 160

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS----IRKFRYRNRII--- 224
            +T Y   +GL   N ++TARD A L ++  K +P   +  +    +  FR  N  +   
Sbjct: 161 SSTHYVEPTGL-SINNVSTARDLAKL-LMATKQYPLIGQLSTTTEKMATFREPNYTLPFR 218

Query: 225 -TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            TNH  + N   NI   KTG+T  +G  +V        P+  VV+
Sbjct: 219 NTNH-LVYNDKWNIQLTKTGFTNQAGHCLVMRTVIGKRPVALVVL 262


>gi|237745522|ref|ZP_04576002.1| murein-dd-endopeptidase, serine peptidase, merops family s11
           [Oxalobacter formigenes HOxBLS]
 gi|229376873|gb|EEO26964.1| murein-dd-endopeptidase, serine peptidase, merops family s11
           [Oxalobacter formigenes HOxBLS]
          Length = 431

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 102/226 (45%), Gaps = 23/226 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-T 112
           +++V+D +  ++   K  +   P AS+TK+MT  ++ E +Q     +N  + +++     
Sbjct: 186 AALVLDESNLEILFEKNSDIALPMASITKLMTALVVVESMQD----MNEILEITEEDVDV 241

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           Q  +   L+  T  T    +   +  S N  + A G    G    F   M+ KA+ +GM 
Sbjct: 242 QKHTSSRLRVGTKMTRANLLHLALMSSENRAAAALGRNYPGGISAFVNAMNIKAQVLGMS 301

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK-----YFSI----RKFRYRNRI 223
           ++ Y ++SGL   N I +ARD A L ++    +P   K     Y+SI    R+  Y    
Sbjct: 302 DSRYVDSSGLSSGN-IASARDLAKL-VMAAAQYPILRKYSTDTYYSIDDGLREMHY---- 355

Query: 224 ITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             N N L+ N   +I   KTGY   +G  +V        PIV V +
Sbjct: 356 -GNTNGLVHNPEWHIRLQKTGYISEAGQCLVMQAVINGRPIVMVFL 400


>gi|161486731|ref|YP_235491.2| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. syringae
           B728a]
          Length = 313

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 104/227 (45%), Gaps = 23/227 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++VID+  +++      +   P AS+TK+MT  ++ +  Q     ++  IPV+    +Q
Sbjct: 46  SAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVVLDAKQP----MDEVIPVN---ISQ 98

Query: 114 NPSKLYLKEKTYFTTEQG----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +  +    +E      +L  +  S N  + +      G    F + M+ KAK +
Sbjct: 99  TPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 158

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP-------QYYKYFSIRKFRYRNR 222
           GM++T Y   +GL   N ++TARD   L +  RK +P          K  + RK  Y   
Sbjct: 159 GMKHTAYVEPTGLSVYN-VSTARDLTKLVMAARK-YPLLSELSTTEQKTVTFRKPTY-TL 215

Query: 223 IITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +N + L+ K + +I   KTG+T  +G  +V      + P+  V++
Sbjct: 216 GFSNTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVIL 262


>gi|237733921|ref|ZP_04564402.1| serine-type D-Ala-D-Ala carboxypeptidase [Mollicutes bacterium D7]
 gi|229383002|gb|EEO33093.1| serine-type D-Ala-D-Ala carboxypeptidase [Coprobacillus sp. D7]
          Length = 184

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 10/166 (6%)

Query: 35  LFLSIIMISMASELHAKP--KYSSIVIDVNKN-QMTGFKQDEPRYPASLTKMMTLYIIFE 91
           L +S++M  + + + A P    S IV++ +    + G  QD  +  AS++K+MT  I  E
Sbjct: 12  LIISLMMTLVNTNVSAVPFQGKSYIVMEASHQIVIEGSNQDYIQSVASISKIMTCIIAIE 71

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
                 + L+T I V  T      S +Y+      +    +  L+ RS ND +    + +
Sbjct: 72  -----NMELDTIITVDDTINKAWGSGVYIHIGDKISLRDLLYGLMLRSGNDAAVMIAKAV 126

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGL--HDKNQITTARDQA 195
                KF  +M++KAK++ + +T + N +GL   D    +T  D A
Sbjct: 127 GKEIPKFVDMMNDKAKELQLHSTTFSNPTGLDEEDNGNQSTVYDMA 172


>gi|217969517|ref|YP_002354751.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thauera sp.
           MZ1T]
 gi|217506844|gb|ACK53855.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thauera sp.
           MZ1T]
          Length = 388

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 93/200 (46%), Gaps = 18/200 (9%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILA 134
           AS+TK+MT  ++ +      L L+  I ++     Q     S+L L   T  + E+ +  
Sbjct: 162 ASITKLMTAMVVLD----AGLSLSEPIEINDADIDQLKGTGSRLALG--TTLSREEMLQL 215

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  +++      G E  F   M+ KA+ +G+ NT + +++GL+  N +++ RD 
Sbjct: 216 ALMSSENRAASSLARHYPGGEAAFVDAMNVKARLLGLWNTRFHDSTGLNPAN-VSSPRDL 274

Query: 195 AILGILLRKNFPQYYKYFSIRKFRY---RNRII--TNHNKLL-NKMHNIDGIKTGYTRNS 248
           A + +    ++P   + FS    RY     R++   N N L+ +    I   KTGY   +
Sbjct: 275 AKM-VAASASYP-LIREFSTAHERYVPVHGRMLRFGNTNSLVRSPEWTISVSKTGYISEA 332

Query: 249 GFNIVTSLRYKDDPIVAVVM 268
           G  +V        P+V V+M
Sbjct: 333 GRCLVMQTWLHQQPVVMVLM 352


>gi|257455273|ref|ZP_05620508.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Enhydrobacter
           aerosaccus SK60]
 gi|257447235|gb|EEV22243.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Enhydrobacter
           aerosaccus SK60]
          Length = 364

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 12/225 (5%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D  R  AS++K+MT  ++ E   +    L       KT       +L + ++      + 
Sbjct: 137 DIARPIASISKLMTAVVVAESGANMGETLTISSLDFKTPKQSGSDRLKVGDQ--LNRAEM 194

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +L ++ +S N  + A           F   M+ KA+++GM  T Y + SGL  +N + + 
Sbjct: 195 LLMMMMKSENPAAKALARTDPMGYDNFISRMNQKARELGMTQTRYYDPSGLDSRN-VASP 253

Query: 192 RDQAILG-ILLRKNFPQYYKYFSIRKF-------RYRNRIITNHNKLL-NKMHNIDGIKT 242
           RD AIL     + N    +     R+F        YR     + N ++ + ++NI   KT
Sbjct: 254 RDLAILARYAYKHNLISQFSTTPSRQFGVNNINSGYRTVAARSTNYMVRDGLYNIGLSKT 313

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           GY R +G  ++      + P + V++G   S+ R   A  +I + 
Sbjct: 314 GYIREAGNCVLFETNVGNRPAIVVLLGANDSKTRWNDAENIIANL 358


>gi|168186694|ref|ZP_02621329.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum C str.
           Eklund]
 gi|169295300|gb|EDS77433.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum C str.
           Eklund]
          Length = 443

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 112/243 (46%), Gaps = 29/243 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDE--PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S+IVID    ++   K  +  P YPAS TK++T  ++ E  +   +   T+  + +   T
Sbjct: 36  SAIVIDAKTGEIIYAKDVDASPMYPASTTKLLTALLLAENKKPTDMLTYTEGSLKQPEYT 95

Query: 113 -QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++  K  LK     + +  +  L+  SAND++    + + G+ + FA +M++K  ++G+
Sbjct: 96  LRSFLKGKLKVGDTMSADDAMKGLLLHSANDIAYMIADNVGGNAENFAKMMNDKVSQLGL 155

Query: 172 QNTIYKNASGLHD--KNQITTARDQAILGILLRKN-FPQYYKYFSIRKFRYRNRII---T 225
           +NT +   +GL +   N  T+A D +I+G     N + +        K    N I+   T
Sbjct: 156 KNTHFVTPNGLDNGISNHYTSAYDLSIIGKAAYSNEWVRNTMNLKQSKLELSNGILGYPT 215

Query: 226 NHNKL---------LNKMHN-----------IDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           N NKL         L+K+ N             G KTGYT  +G  +V      +  ++ 
Sbjct: 216 NRNKLLGTTLDSNFLSKLGNNSKETPVSDAICIGGKTGYTTKAGRCLVAMFNKDNRVLIG 275

Query: 266 VVM 268
           VVM
Sbjct: 276 VVM 278


>gi|63256357|gb|AAY37453.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Pseudomonas
           syringae pv. syringae B728a]
 gi|330973126|gb|EGH73192.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 294

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 104/227 (45%), Gaps = 23/227 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++VID+  +++      +   P AS+TK+MT  ++ +  Q     ++  IPV+    +Q
Sbjct: 27  SAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVVLDAKQP----MDEVIPVN---ISQ 79

Query: 114 NPSKLYLKEKTYFTTEQG----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +  +    +E      +L  +  S N  + +      G    F + M+ KAK +
Sbjct: 80  TPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 139

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP-------QYYKYFSIRKFRYRNR 222
           GM++T Y   +GL   N ++TARD   L +  RK +P          K  + RK  Y   
Sbjct: 140 GMKHTAYVEPTGLSVYN-VSTARDLTKLVMAARK-YPLLSELSTTEQKTVTFRKPTY-TL 196

Query: 223 IITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +N + L+ K + +I   KTG+T  +G  +V      + P+  V++
Sbjct: 197 GFSNTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVIL 243


>gi|145599789|ref|YP_001163865.1| D-alanyl-D-alanine endopeptidase [Yersinia pestis Pestoides F]
 gi|186894625|ref|YP_001871737.1| D-alanyl-D-alanine endopeptidase [Yersinia pseudotuberculosis
           PB1/+]
 gi|108776609|gb|ABG19128.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Yersinia pestis Nepal516]
 gi|108778797|gb|ABG12855.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Yersinia pestis Antiqua]
 gi|145211485|gb|ABP40892.1| penicillin-binding protein 7 precursor [Yersinia pestis Pestoides
           F]
 gi|186697651|gb|ACC88280.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Yersinia
           pseudotuberculosis PB1/+]
          Length = 323

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 19/225 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N++      +   P AS+TK+MT  ++ +     KL L+  + V     T+
Sbjct: 58  SAMVVDLQTNKVIYANNADKVVPIASITKLMTAMVVLD----AKLPLDEILSVD-IDQTK 112

Query: 114 NPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               ++  ++  +  + +  +L  +  S N  + +      G    F   M+ KAK +GM
Sbjct: 113 ELKGVFSRVRVNSEISRKDMLLLTLMSSENRAAASLAHHYPGGYNAFIKAMNAKAKSLGM 172

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS----IRKFRYRNRII--- 224
            +T Y   +GL   N ++TARD A L ++  K +P   +  +    +  FR  N  +   
Sbjct: 173 NSTHYVEPTGL-SINNVSTARDLAKL-LMATKQYPLIGQLSTTTEKMATFREPNYTLPFR 230

Query: 225 -TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            TNH  + N   NI   KTG+T  +G  +V        P+  VV+
Sbjct: 231 NTNH-LVYNDKWNIQLTKTGFTNQAGHCLVMRTVIGKRPVALVVL 274


>gi|71065270|ref|YP_263997.1| murein-DD-endopeptidase [Psychrobacter arcticus 273-4]
 gi|71038255|gb|AAZ18563.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Psychrobacter arcticus 273-4]
          Length = 363

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 102/234 (43%), Gaps = 19/234 (8%)

Query: 72  DEPRYPASLTKMMTLYIIFEYL--QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE 129
           D  R  AS+TK+MT  ++ +      ++L L+ +  V    A+ N     LK        
Sbjct: 137 DIARPMASITKVMTAMVVLDAGLDMREELTLDPEDFVGPKRASSN-----LKSGDRLNRA 191

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           + +L  + +S N  + +      G    F   M+ KA+++GM    + + +GL DK  I 
Sbjct: 192 EMLLMALMKSENPAAKSLARNYPGGYSAFMRAMNRKAQELGMSTAFFGDPTGL-DKRNIA 250

Query: 190 TARDQAIL-------GILLRKNFPQYYKYFSIRKFRYRNRI--ITNHNKLLNKMHNIDGI 240
           ++ D   +        ++ R +  + Y +F +  +   NR     N + L+       GI
Sbjct: 251 SSNDLVKMVRAAGNYDVIRRFSTTKSYDFF-VSNYASGNRTYKANNTSSLVRDGSYPIGI 309

Query: 241 -KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
            KTG+   +G  +V   R  + P + V++G  +S  R   A  ++ S   ++T+
Sbjct: 310 SKTGFINEAGRCVVMETRVNNRPAIIVILGANSSATRWGDAKNILNSLATRRTV 363


>gi|238763822|ref|ZP_04624780.1| D-alanyl-D-alanine endopeptidase [Yersinia kristensenii ATCC 33638]
 gi|238697952|gb|EEP90711.1| D-alanyl-D-alanine endopeptidase [Yersinia kristensenii ATCC 33638]
          Length = 311

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 102/225 (45%), Gaps = 19/225 (8%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N++      DE    AS+TK+MT  ++ +     KL L+  I V     T+
Sbjct: 46  SAMVVDLQTNKVIYANNADEVVPIASITKLMTAMVVLD----AKLPLDEIISVD-IHQTK 100

Query: 114 NPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               ++  ++  +  + +  +L  +  S N  + +      G    F   M+ KAK +GM
Sbjct: 101 EMKGVFSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNAKAKSLGM 160

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS----IRKFRYRNRII--- 224
            NT Y   +GL   N ++TARD   L ++  K +P   +  +    +  FR  N  +   
Sbjct: 161 TNTRYVEPTGL-SINNVSTARDLTKL-LIATKQYPLIGQLSTTTEKMATFRDPNYTLPFR 218

Query: 225 -TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            TNH  + N   NI   KTG+T  +G  +       + P+  VV+
Sbjct: 219 NTNH-LVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPVALVVL 262


>gi|170703460|ref|ZP_02894228.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ambifaria IOP40-10]
 gi|170131628|gb|EDT00188.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ambifaria IOP40-10]
          Length = 370

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 104/247 (42%), Gaps = 32/247 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N  +    K      P AS++K+MT  ++ +   
Sbjct: 99  VGQAFGLHDTPDALALRSSVAYVVDQNTGEPLFDKNSHAVVPIASISKLMTAMVVLD--- 155

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  +  Q+ V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 156 -AKSPMTDQLEVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPG 214

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM +T ++N++GL   N +++ARD       L K     Y+Y  
Sbjct: 215 GRPAFIAAMNAKAKSLGMNDTHFENSTGLSSSN-VSSARD-------LVKMVNAAYQYPM 266

Query: 214 IRKFRY----------RNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           IR+F            RN +  + N L+  N   +I   KTG+   +G  +V        
Sbjct: 267 IRQFSTDRTYDVYTGKRNLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGR 326

Query: 262 PIVAVVM 268
           P+V V++
Sbjct: 327 PMVMVLL 333


>gi|116617478|ref|YP_817849.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|116096325|gb|ABJ61476.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 444

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 123/276 (44%), Gaps = 39/276 (14%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAAT 112
           S++V+D+   Q+ G K    +   AS +KM+T Y + + ++S K+  +T +P+ SK   +
Sbjct: 59  SALVVDLTTGQILGQKNSSKQVAIASQSKMLTAYGVLKSIKSGKIKWSTMVPITSKADLS 118

Query: 113 QNPSKLY----LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
           +  S L+    +K     +  +    +   SAND + A GEF++   +     + + AK+
Sbjct: 119 KEDSHLFSHIAIKAGDKVSVRELYDVMFANSANDAAFALGEFVTPKGETTQQALESWAKE 178

Query: 169 IGMQNTIYKNASGLHD----KNQITTARDQAI-------LGILLRK------NFPQYYKY 211
           + +  + + N++G  +    +N+I++A   A        L ++ R       +  Q  K 
Sbjct: 179 LHLSGSQWYNSAGQVNENAFENEISSAPKTASNKASNQQLAMIARAILELDPSLRQLSKK 238

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHN------------IDGIKTGYTRNSGFNIVTSLRYK 259
            +I      N ++T+       M              I+G+KTG +  SG      ++ K
Sbjct: 239 LTISYHMTPNFVVTDKTDYWQLMTETMPNLSNPNQLTIEGLKTGSSPESGAGFTGLIKDK 298

Query: 260 DD-PIVAVVMGMPT---SQERDQKALELITSFLEKK 291
           +    + VV G+       +R Q++L ++   L +K
Sbjct: 299 NGHEFITVVNGIANYMDETKRYQESLRIVDQVLAQK 334


>gi|55823010|ref|YP_141451.1| D-alanyl-D-alanine-carboxypeptidase, penicillin-binding protein,
           truncated [Streptococcus thermophilus CNRZ1066]
 gi|55738995|gb|AAV62636.1| D-alanyl-D-alanine-carboxypeptidase, penicillin-binding protein,
           truncated [Streptococcus thermophilus CNRZ1066]
          Length = 313

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 33/177 (18%)

Query: 139 SANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGL-------------HD 184
           S+N  +     +++ ++  K+  +M+ K+K++ M NT + NASG              +D
Sbjct: 6   SSNVTTVMLANYLTNNDPDKWLDMMNEKSKELSMTNTKWFNASGAAAVAFKGYYSPQRYD 65

Query: 185 KNQI--TTARDQAILGILLRKNFPQYYKYFS------------IRKFRYRNRIITNHNKL 230
            NQ   TTARD  I+     K +P   KY S               F   N  I   N  
Sbjct: 66  NNQSNQTTARDLVIMTYNFIKKYPDILKYTSKPVVAVKEGTPYEETFETYNYSIPGANYG 125

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           L     +DG KTG++    FN + ++++ +  ++A++MG  +    DQ   E+  +F
Sbjct: 126 L---KGVDGSKTGFSPEVAFNYIDTIKHGNQRMIAIIMG--SGDWSDQTGEEIRHTF 177


>gi|22126890|ref|NP_670313.1| D-alanyl-D-alanine endopeptidase [Yersinia pestis KIM 10]
 gi|45440799|ref|NP_992338.1| D-alanyl-D-alanine endopeptidase [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51595561|ref|YP_069752.1| D-alanyl-D-alanine endopeptidase [Yersinia pseudotuberculosis IP
           32953]
 gi|149366829|ref|ZP_01888863.1| penicillin-binding protein 7 precursor [Yersinia pestis CA88-4125]
 gi|162100180|ref|YP_650800.2| D-alanyl-D-alanine endopeptidase [Yersinia pestis Antiqua]
 gi|162139430|ref|YP_648728.2| D-alanyl-D-alanine endopeptidase [Yersinia pestis Nepal516]
 gi|162418831|ref|YP_001605881.1| D-alanyl-D-alanine endopeptidase [Yersinia pestis Angola]
 gi|165924784|ref|ZP_02220616.1| penicillin-binding protein 7 [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165938339|ref|ZP_02226897.1| penicillin-binding protein 7 [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166009970|ref|ZP_02230868.1| penicillin-binding protein 7 [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211300|ref|ZP_02237335.1| penicillin-binding protein 7 [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400360|ref|ZP_02305873.1| penicillin-binding protein 7 [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419589|ref|ZP_02311342.1| penicillin-binding protein 7 [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167423973|ref|ZP_02315726.1| penicillin-binding protein 7 [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167466748|ref|ZP_02331452.1| penicillin-binding protein 7 [Yersinia pestis FV-1]
 gi|218928339|ref|YP_002346214.1| D-alanyl-D-alanine endopeptidase [Yersinia pestis CO92]
 gi|229841118|ref|ZP_04461277.1| Murein-DD-endopeptidase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229843222|ref|ZP_04463368.1| Murein-DD-endopeptidase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229894160|ref|ZP_04509346.1| Murein-DD-endopeptidase [Yersinia pestis Pestoides A]
 gi|229903394|ref|ZP_04518507.1| Murein-DD-endopeptidase [Yersinia pestis Nepal516]
 gi|270487204|ref|ZP_06204278.1| D-alanyl-D-alanine endopeptidase [Yersinia pestis KIM D27]
 gi|294503194|ref|YP_003567256.1| penicillin-binding protein 7 precursor [Yersinia pestis Z176003]
 gi|21959926|gb|AAM86564.1|AE013903_1 penicillin-binding protein 7 [Yersinia pestis KIM 10]
 gi|45435657|gb|AAS61215.1| penicillin-binding protein 7 precursor [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51588843|emb|CAH20457.1| penicillin-binding protein 7 precursor [Yersinia pseudotuberculosis
           IP 32953]
 gi|115346950|emb|CAL19840.1| penicillin-binding protein 7 precursor [Yersinia pestis CO92]
 gi|149291203|gb|EDM41278.1| penicillin-binding protein 7 precursor [Yersinia pestis CA88-4125]
 gi|162351646|gb|ABX85594.1| penicillin-binding protein 7 [Yersinia pestis Angola]
 gi|165913717|gb|EDR32336.1| penicillin-binding protein 7 [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165923844|gb|EDR40976.1| penicillin-binding protein 7 [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165991366|gb|EDR43667.1| penicillin-binding protein 7 [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207071|gb|EDR51551.1| penicillin-binding protein 7 [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962330|gb|EDR58351.1| penicillin-binding protein 7 [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167050309|gb|EDR61717.1| penicillin-binding protein 7 [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056822|gb|EDR66585.1| penicillin-binding protein 7 [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|229679164|gb|EEO75267.1| Murein-DD-endopeptidase [Yersinia pestis Nepal516]
 gi|229689569|gb|EEO81630.1| Murein-DD-endopeptidase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229697484|gb|EEO87531.1| Murein-DD-endopeptidase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229704045|gb|EEO91058.1| Murein-DD-endopeptidase [Yersinia pestis Pestoides A]
 gi|262361233|gb|ACY57954.1| penicillin-binding protein 7 precursor [Yersinia pestis D106004]
 gi|262365230|gb|ACY61787.1| penicillin-binding protein 7 precursor [Yersinia pestis D182038]
 gi|270335708|gb|EFA46485.1| D-alanyl-D-alanine endopeptidase [Yersinia pestis KIM D27]
 gi|294353653|gb|ADE63994.1| penicillin-binding protein 7 precursor [Yersinia pestis Z176003]
 gi|320015987|gb|ADV99558.1| Murein-DD-endopeptidase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 311

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 19/225 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N++      +   P AS+TK+MT  ++ +     KL L+  + V     T+
Sbjct: 46  SAMVVDLQTNKVIYANNADKVVPIASITKLMTAMVVLD----AKLPLDEILSVD-IDQTK 100

Query: 114 NPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               ++  ++  +  + +  +L  +  S N  + +      G    F   M+ KAK +GM
Sbjct: 101 ELKGVFSRVRVNSEISRKDMLLLTLMSSENRAAASLAHHYPGGYNAFIKAMNAKAKSLGM 160

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS----IRKFRYRNRII--- 224
            +T Y   +GL   N ++TARD A L ++  K +P   +  +    +  FR  N  +   
Sbjct: 161 NSTHYVEPTGL-SINNVSTARDLAKL-LMATKQYPLIGQLSTTTEKMATFREPNYTLPFR 218

Query: 225 -TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            TNH  + N   NI   KTG+T  +G  +V        P+  VV+
Sbjct: 219 NTNH-LVYNDKWNIQLTKTGFTNQAGHCLVMRTVIGKRPVALVVL 262


>gi|329934220|ref|ZP_08284299.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           griseoaurantiacus M045]
 gi|329305816|gb|EGG49671.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           griseoaurantiacus M045]
          Length = 341

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 67/124 (54%), Gaps = 11/124 (8%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIP---VSKTAATQN----PSKLYLKEKTYFTTEQ 130
           AS+TK+MT ++I   L+ + L      P   V +TAA ++     S + ++E T  +  +
Sbjct: 105 ASVTKVMTAWVI---LRDRPLRAGEDGPLVTVDRTAANESFSGVESSVPVREGTRLSERR 161

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  L+  S N+++     + +GS++ F + M+  A+ +GM++T Y  ASG+      T+
Sbjct: 162 LLELLLIPSGNNIARLLARWNAGSQEAFVMKMNRAARDLGMRHTTYTGASGIEPTTTSTS 221

Query: 191 ARDQ 194
           A DQ
Sbjct: 222 A-DQ 224


>gi|187924564|ref|YP_001896206.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           phytofirmans PsJN]
 gi|187715758|gb|ACD16982.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           phytofirmans PsJN]
          Length = 395

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 104/246 (42%), Gaps = 31/246 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  VID N  +    K      P AS+TK+MT  ++ +   
Sbjct: 124 VGQAFGLHETPDALMLRSSVAYVIDQNSGESLFDKNSRAVVPIASITKLMTAMVVLD--- 180

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  +  QI V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 181 -SKEPMTDQIEVTDEDRDYEKNTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYFPG 239

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK++GM +T ++N +GL  +N +++ARD       L K     Y+Y  
Sbjct: 240 GRPAFLAAMNAKAKQLGMTDTHFENPTGLTSQN-VSSARD-------LVKMVNAAYQYPI 291

Query: 214 IRKFRY----------RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           IR+F            R+    + N L+ N   +I   KTG+   +G  +V        P
Sbjct: 292 IRRFSTDHSYEVYTGKRSLAYNSTNALVRNPTWDIGLQKTGFINEAGECLVMQATIHGRP 351

Query: 263 IVAVVM 268
           ++ V++
Sbjct: 352 MIMVLL 357


>gi|116493792|ref|YP_805526.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus casei ATCC 334]
 gi|227534583|ref|ZP_03964632.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239631047|ref|ZP_04674078.1| D-alanyl-D-alanine carboxypeptidase dacA [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|301065368|ref|YP_003787391.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus casei str.
           Zhang]
 gi|116103942|gb|ABJ69084.1| D-Ala-D-Ala carboxypeptidase A, Serine peptidase, MEROPS family S11
           [Lactobacillus casei ATCC 334]
 gi|227187832|gb|EEI67899.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239527330|gb|EEQ66331.1| D-alanyl-D-alanine carboxypeptidase dacA [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|300437775|gb|ADK17541.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus casei str.
           Zhang]
          Length = 436

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 116/245 (47%), Gaps = 35/245 (14%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           AS+TKM+++ ++ + ++S K++ + ++     + + +  ++ S + L+    ++  +   
Sbjct: 66  ASMTKMLSIELVLDAIKSGKINWDDKVTLNNAIWELSQNRDLSNVPLRRDGSYSVRELYD 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD--------- 184
           A +  SAN       E ++GS++KF   M+ K    G+ +    N +GL++         
Sbjct: 126 ASLIYSANAAMMLLAEKVAGSQEKFVSQMTAKLNSWGITDAKIVNVTGLNNSQLKDAKVP 185

Query: 185 ------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL-- 231
                 +N++ +A+D A +   L K+ P+  K  SI K  +R        + N N +L  
Sbjct: 186 GTDDNAENEM-SAKDMAQVAQHLLKDHPEVLKTTSIAKQTFRKGTSDAIDMENWNWMLKG 244

Query: 232 ----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM---GMPTSQERDQKALELI 284
               +K   +DG+KTG +  +G     ++      I+ V++   G   ++  DQ   +L+
Sbjct: 245 LVSYDKNLPVDGLKTGTSDAAGDCFTGTVEKNGMRIITVILHANGDAKTRRFDQTK-KLM 303

Query: 285 TSFLE 289
           T+ LE
Sbjct: 304 TNVLE 308


>gi|169839592|ref|ZP_02872780.1| D-alanyl-D-alanine carboxypeptidase [candidate division TM7
           single-cell isolate TM7a]
          Length = 203

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 81/160 (50%), Gaps = 6/160 (3%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPK----YSSIVI-DVNKNQMTGFKQDEPRYPASLTK 82
           I +  K + LS+  ++M++   A  +    Y +++I DVN N +        R  AS+TK
Sbjct: 7   IGIKSKKIVLSMAFLAMSAFSFADGENYHDYKALLIGDVNGNIIKEDNSLAVRPLASVTK 66

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT  +  + ++S ++  + ++ VS  AA+  P  + L     +T    + A I +S+N+
Sbjct: 67  IMTSILTLDKIKSGQISYDDKVTVSSKAASV-PYGVKLTAGKQYTVRDLLKATIIKSSNN 125

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
            + A  E++ G    F   M+ KA+  G+ +  Y + +GL
Sbjct: 126 AAYALAEYVGGDVPSFVRSMNEKARSYGLDSLRYCSPNGL 165


>gi|46203560|ref|ZP_00051352.2| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 110

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 37/60 (61%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           +P YPAS+TK+MT Y+  + ++  K+ L+T + +S  AA + PSK+  K  T  T +  +
Sbjct: 48  DPWYPASITKLMTTYVALDMVRQGKISLDTLLTISPAAAAEPPSKMGFKPGTQITLDNAL 107


>gi|302186370|ref|ZP_07263043.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. syringae
           642]
          Length = 311

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 104/227 (45%), Gaps = 23/227 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++VID+  +++      +   P AS+TK+MT  ++ +  Q     ++  IPV+    +Q
Sbjct: 44  SAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVVLDAKQP----MDEVIPVN---ISQ 96

Query: 114 NPSKLYLKEKTYFTTEQG----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +  +    +E      +L  +  S N  + +      G    F + M+ KAK +
Sbjct: 97  TPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 156

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP-------QYYKYFSIRKFRYRNR 222
           GM++T Y   +GL   N ++TARD   L +  RK +P          K  + RK  Y   
Sbjct: 157 GMKHTAYVEPTGLSVYN-VSTARDLTKLVMAARK-YPLLSELSTTEQKTVTFRKPTY-TL 213

Query: 223 IITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +N + L+ K + +I   KTG+T  +G  +V      + P+  V++
Sbjct: 214 GFSNTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVIL 260


>gi|191637034|ref|YP_001986200.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus casei BL23]
 gi|190711336|emb|CAQ65342.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus casei BL23]
 gi|327381061|gb|AEA52537.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus casei LC2W]
 gi|327384236|gb|AEA55710.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus casei BD-II]
          Length = 436

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 116/245 (47%), Gaps = 35/245 (14%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           AS+TKM+++ ++ + ++S K++ + ++     + + +  ++ S + L+    ++  +   
Sbjct: 66  ASMTKMLSIELVLDAIKSGKINWDDKVTLNNAIWELSQNRDLSNVPLRRDGSYSVRELYD 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD--------- 184
           A +  SAN       E ++GS++KF   M+ K    G+ +    N +GL++         
Sbjct: 126 ASLIYSANAAMMLLAEKVAGSQEKFVSQMTAKLNSWGITDAKIVNVTGLNNSQLKDAKVP 185

Query: 185 ------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL-- 231
                 +N++ +A+D A +   L K+ P+  K  SI K  +R        + N N +L  
Sbjct: 186 GTDDNAENEM-SAKDMAQVAQHLLKDHPEVLKTTSIAKQTFRKGTSDAIDMENWNWMLKG 244

Query: 232 ----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM---GMPTSQERDQKALELI 284
               +K   +DG+KTG +  +G     ++      I+ V++   G   ++  DQ   +L+
Sbjct: 245 LVSYDKDLPVDGLKTGTSDAAGDCFTGTVEKNGMRIITVILHANGDAKTRRFDQTK-KLM 303

Query: 285 TSFLE 289
           T+ LE
Sbjct: 304 TNVLE 308


>gi|91784256|ref|YP_559462.1| murein-DD-endopeptidase [Burkholderia xenovorans LB400]
 gi|91688210|gb|ABE31410.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Burkholderia xenovorans LB400]
          Length = 389

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 104/246 (42%), Gaps = 31/246 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  VID N  +    K      P AS+TK+MT  ++ +   
Sbjct: 118 VGQAFGLHETPDALMLRSSVAYVIDQNSGEPLFDKNSRAVVPIASITKLMTAMVVLD--- 174

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  +  QI V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 175 -SKEPMTDQIEVTDEDRDYEKNTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYFPG 233

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK++GM +T ++N +GL  +N +++ARD       L K     Y+Y  
Sbjct: 234 GRPAFLAAMNAKAKQLGMTDTHFENPTGLTSQN-VSSARD-------LVKMVNAAYQYPL 285

Query: 214 IRKFRY----------RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           IR+F            R+    + N L+ N   +I   KTG+   +G  +V        P
Sbjct: 286 IRRFSTDHSYEVYTGKRSLAYNSTNALVRNPTWDIGLQKTGFINEAGECLVMQATIHGRP 345

Query: 263 IVAVVM 268
           ++ V++
Sbjct: 346 MIMVLL 351


>gi|41409077|ref|NP_961913.1| DacB [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41397436|gb|AAS05296.1| DacB [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 289

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 88/202 (43%), Gaps = 16/202 (7%)

Query: 52  PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  + I+ D++  Q + G   +    PAS  K +   ++ +     ++ L+  + V+  A
Sbjct: 39  PAQTWIIADLDSGQVLAGRDPNVAHPPASTIKTLLAQVVLD-----EVSLDATV-VADAA 92

Query: 111 ATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            TQ   + + +K    +T  Q + AL+  S ND +      + G E   A  M+ KA  +
Sbjct: 93  DTQVECNCVGIKPGRSYTARQLLDALLLVSGNDAANTLAHMLGGPEATVA-KMNAKAAAL 151

Query: 170 GMQNTIYKNASGLHDKNQI--TTARDQAIL--GILLRKNFPQYYKYFSIRKFRYRNRI-- 223
           G  NT     SGL   N    +TA D A++    +    F Q     S   F   N +  
Sbjct: 152 GATNTHASTPSGLDGPNGSGSSTAHDLAVIFRAAMANPVFAQITAEPSAM-FPGDNGLQP 210

Query: 224 ITNHNKLLNKMHNIDGIKTGYT 245
           ITN ++LL +     G KTG+T
Sbjct: 211 ITNQDELLQRYPGAIGGKTGFT 232


>gi|294814332|ref|ZP_06772975.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
 gi|294326931|gb|EFG08574.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
          Length = 859

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 10/190 (5%)

Query: 74  PRYPASLTKMMTLYIIFEY------LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           PR  AS+TK MT Y+I          Q  ++ ++ +      +   + S + +K    +T
Sbjct: 528 PRPIASVTKAMTAYVILREKPLTGKGQGDRITIDQRTEDEYHSGKNSESVVEVKAGQKYT 587

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
             Q +  L+  SAN+V+     + +GSE  F   M   A  +GM++T+Y + SGL     
Sbjct: 588 QRQLLELLMIPSANNVARLLARWHAGSEAAFVKKMQAAADDLGMKDTVYTDPSGLR-STT 646

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYT 245
           ++T  DQ  L     ++   + +  +  K +     R I N       +  + GIKTG +
Sbjct: 647 VSTPLDQLKLAEAAMQDE-VFREIVNTTKLKVPGIERTIYNSADKALLLDGVGGIKTGSS 705

Query: 246 RNSGFNIVTS 255
             +G N++ S
Sbjct: 706 TPAGGNLLWS 715


>gi|289807457|ref|ZP_06538086.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 92

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 47/92 (51%)

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND   A  ++I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D A+L  
Sbjct: 1   GNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSR 60

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
            +    P++Y  +S +   +      N N L+
Sbjct: 61  AIIHGEPEFYHMYSEKSLTWNGITQQNRNGLV 92


>gi|257065656|ref|YP_003151912.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Anaerococcus
           prevotii DSM 20548]
 gi|256797536|gb|ACV28191.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Anaerococcus
           prevotii DSM 20548]
          Length = 288

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 70/136 (51%), Gaps = 12/136 (8%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKL-YLKE 122
           G  +++P   ASLTK+MTL +  +++     +L    P+       A ++N S   +L  
Sbjct: 52  GKNENKPLPMASLTKIMTLLVSLDHVS----NLGELAPIDYDSYMRAVSENASMAGFLAN 107

Query: 123 KTYFTTEQGIL-ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
           +T  TT + ++   I  S  + + +    ++GS   F  LM+ K  ++ ++NT Y NA G
Sbjct: 108 ET--TTYRDLMYGTILASGAEAADSLAINVAGSIDSFVDLMNEKVGELNLENTSYANADG 165

Query: 182 LHDKNQITTARDQAIL 197
           + D+    +A+D A+L
Sbjct: 166 MDDRRNFQSAKDCAML 181


>gi|2764670|emb|CAA04971.1| pbp2 [Streptomyces clavuligerus]
          Length = 696

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 17/187 (9%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-----LYLKEKTYFTTEQGI 132
           AS  K+MT Y++      K+      I V      +  +K       L E   F+ +  +
Sbjct: 364 ASTAKIMTAYVLLRKHPLKRGEPGPTITVDAQTVAEGKAKDESRIEGLTEGQTFSQQDML 423

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAIL--MSNKAKKIGMQNTIYKNASGLHDKNQITT 190
             L+  S N++      + + ++ + A +  M+  AK +GM+NT+Y + SGL DK  ++T
Sbjct: 424 KMLMIPSGNNIGRLLARWSTKTDDQTAFVREMNEAAKDLGMKNTVYTDPSGL-DKGTVST 482

Query: 191 ARDQAILGILLRKNFPQYYKYFSI-----RKFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
           A DQ    + L +   +Y  +  +      +     RI  N+++L+     I GIKTG  
Sbjct: 483 AVDQ----LKLAEAVMEYDVFRDVVALPNAEIPGHGRIYNNNDRLILAGLGIVGIKTGSN 538

Query: 246 RNSGFNI 252
             +G  +
Sbjct: 539 TPAGGTL 545


>gi|70731349|ref|YP_261090.1| D-alanyl-D-alanine endopeptidase [Pseudomonas fluorescens Pf-5]
 gi|68345648|gb|AAY93254.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas fluorescens Pf-5]
          Length = 312

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 112/244 (45%), Gaps = 28/244 (11%)

Query: 45  ASELHAKPK---------YSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           ASE  A P+          S++++D+  N++      +   P AS+TK+MT  ++ +   
Sbjct: 25  ASETTAAPRDTSQLHIASGSALLLDLQTNKVIYSSNPDVIVPIASVTKLMTAMVVLD--- 81

Query: 95  SKKLHLNTQIP--VSKTAATQNP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
             KL L+  I   +S T   +   S++ L  +   +    +L  +  S N  + +     
Sbjct: 82  -AKLPLDEYISMNISDTPEMKGVFSRVKLNSE--LSRRDTLLIALMSSENRAAASLAHHY 138

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            G    F   M+ KAK +GM +T Y   +GL   N ++TARD + L +  RK +P   + 
Sbjct: 139 PGGYAAFIAAMNAKAKSLGMTHTRYVEPTGLSIHN-VSTARDLSKLLVASRK-YPLLSEL 196

Query: 212 FSIRK----FRYRNRIIT--NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
            + ++    FR  N  +   N + L+NK   +I   KTG+T  +G  +V      + P+ 
Sbjct: 197 STTKEKTVAFRKPNYTLGFRNTDHLVNKEKWDIKITKTGFTNQAGHCLVLVTSMGNRPVA 256

Query: 265 AVVM 268
            V++
Sbjct: 257 LVIL 260


>gi|269213993|ref|ZP_05983348.2| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           cinerea ATCC 14685]
 gi|269144751|gb|EEZ71169.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           cinerea ATCC 14685]
          Length = 316

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 77/163 (47%), Gaps = 15/163 (9%)

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S N  + A G    G    F   M+ KA+ +GM ++ +   +GL+ +N ++TA+D +++ 
Sbjct: 160 SENRATHALGRTYPGGMGAFVAAMNRKAQSLGMYSSRFYEPTGLNYQN-VSTAKDLSLM- 217

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIIT--------NHNKLLNK-MHNIDGIKTGYTRNSG 249
                N    Y    I        + T        N N L+ + M NI+  KTGY R +G
Sbjct: 218 ----VNAAVQYPQIRINSTSNHAAVQTKNGQQNYKNSNALVREGMWNIELQKTGYIREAG 273

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
            ++V     ++ P+  +++  PTS  R   A ++ +  L++++
Sbjct: 274 RSMVVRANIQNQPVTIILLNSPTSATRVNDARKIESWMLQQRS 316


>gi|330953321|gb|EGH53581.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae Cit 7]
          Length = 311

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 104/227 (45%), Gaps = 23/227 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++VID+  +++      +   P AS+TK+MT  ++ +  Q     ++  IPV+    +Q
Sbjct: 44  SAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVVLDAKQP----MDEVIPVN---ISQ 96

Query: 114 NPSKLYLKEKTYFTTEQG----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +  +    +E      +L  +  S N  + +      G    F + M+ KAK +
Sbjct: 97  TPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 156

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-------KYFSIRKFRYRNR 222
           GM++T Y   +GL   N ++TARD   L +  RK +P          K  + RK  Y   
Sbjct: 157 GMKHTAYVEPTGLSVYN-VSTARDLTKLVMAARK-YPLLSELSTTEQKTVTFRKPTY-TL 213

Query: 223 IITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +N + L+ K + +I   KTG+T  +G  +V      + P+  V++
Sbjct: 214 GFSNTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVIL 260


>gi|118465675|ref|YP_882938.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium 104]
 gi|254776211|ref|ZP_05217727.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|118166962|gb|ABK67859.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium 104]
          Length = 298

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 88/202 (43%), Gaps = 16/202 (7%)

Query: 52  PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  + I+ D++  Q + G   +    PAS  K +   ++ +     ++ L+  + V+  A
Sbjct: 48  PAQTWIIADLDSGQVLAGRDPNVAHPPASTIKTLLAQVVLD-----EVSLDATV-VADAA 101

Query: 111 ATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            TQ   + + +K    +T  Q + AL+  S ND +      + G E   A  M+ KA  +
Sbjct: 102 DTQVECNCVGIKPGRSYTARQLLDALLLVSGNDAANTLAHMLGGPEATVA-KMNAKAAAL 160

Query: 170 GMQNTIYKNASGLHDKNQI--TTARDQAIL--GILLRKNFPQYYKYFSIRKFRYRNRI-- 223
           G  NT     SGL   N    +TA D A++    +    F Q     S   F   N +  
Sbjct: 161 GATNTHASTPSGLDGPNGSGSSTAHDLAVIFRAAMANPVFAQITAEPSAM-FPGDNGLQP 219

Query: 224 ITNHNKLLNKMHNIDGIKTGYT 245
           ITN ++LL +     G KTG+T
Sbjct: 220 ITNQDELLQRYPGAIGGKTGFT 241


>gi|117621185|ref|YP_858159.1| D-alanyl-D-alanine carboxypeptidase family protein [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117562592|gb|ABK39540.1| D-alanyl-D-alanine carboxypeptidase family protein [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 275

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 110/224 (49%), Gaps = 33/224 (14%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-P-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S++V+DV   + T ++++  R  P AS+TK+MT  ++ +  Q           + +T   
Sbjct: 38  SALVMDVGTGK-TLYQKNATRVRPIASITKLMTALVVLDARQD----------LGQTLTI 86

Query: 113 QNPSKLYLKEKTYFTTEQGI---------LALITRSANDVSTAFGEFISGSEKKFAILMS 163
               +  +K  TY     G          LAL++ S N +++A      G    F   M+
Sbjct: 87  DQNDRDAIKH-TYSRVRMGTQVSRRDALHLALMS-SENRMASALARHYPGGRPAFVRAMN 144

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQA-ILGILLRKNFPQYYKYFSIRKFRYR-- 220
           NKAK++GM+N+ + +++GL  +N ++TA+D A ++    R+   + +   + +  R+R  
Sbjct: 145 NKAKQLGMRNSRFYDSTGLSTRN-VSTAQDLAKLIAAAYRQPLIREFTQDTSKDMRFRTP 203

Query: 221 --NRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
             + +  N N L+ N   ++   KTG+T  +G  ++  +R K D
Sbjct: 204 AYSLMFNNTNPLVKNPDWDVRLSKTGFTDEAGRCLL--MRAKPD 245


>gi|242239829|ref|YP_002988010.1| D-alanyl-D-alanine endopeptidase [Dickeya dadantii Ech703]
 gi|242131886|gb|ACS86188.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Dickeya
           dadantii Ech703]
          Length = 315

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 102/227 (44%), Gaps = 23/227 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N++      +   P AS+TK+MT  ++ +  Q     ++  I  S+TA  +
Sbjct: 45  SAMVVDLRNNEVLYSTNPDVVVPIASVTKLMTAMVVLDANQPMDERISVDI--SQTAEMK 102

Query: 114 NP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S++ L  +   +    +L  +  S N  + +      G  + F   M+ KAK +GM 
Sbjct: 103 GVYSRVRLGSE--ISRHDMLLLALMSSENRAAASLAHHYRGGYQAFIAAMNAKAKALGMT 160

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-----------FRYRN 221
           +T Y   +GL   N ++TARD   L ++  K +P   +  + ++             +RN
Sbjct: 161 HTRYVEPTGLSIHN-VSTARDLTKL-LIASKQYPLLSQLSTTQEKTATFTNPSYSLPFRN 218

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              TNH  +     NI   KTG+T  +G  +V        P+  VV+
Sbjct: 219 ---TNH-LIYRSDWNIQLTKTGFTNQAGHCLVMRTVINQRPVALVVL 261


>gi|171320025|ref|ZP_02909096.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ambifaria MEX-5]
 gi|171094718|gb|EDT39761.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ambifaria MEX-5]
          Length = 370

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 104/247 (42%), Gaps = 32/247 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N  +    K      P AS++K+MT  ++ +   
Sbjct: 99  VGQAFGLHDTPDALALRSSVAYVVDQNTGEPLFDKNSHAVVPIASISKLMTAMVVLD--- 155

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  +  Q+ V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 156 -SKSPMTDQLEVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPG 214

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM +T ++N++GL   N +++ARD       L K     Y+Y  
Sbjct: 215 GRPAFIAAMNAKAKTLGMNDTHFENSTGLSSSN-VSSARD-------LVKMVNAAYQYPM 266

Query: 214 IRKFRY----------RNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           IR+F            RN +  + N L+  N   +I   KTG+   +G  +V        
Sbjct: 267 IRQFSTDRTYDVYTGKRNLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGR 326

Query: 262 PIVAVVM 268
           P+V V++
Sbjct: 327 PMVMVLL 333


>gi|254388319|ref|ZP_05003554.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
 gi|197702041|gb|EDY47853.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
          Length = 883

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 10/190 (5%)

Query: 74  PRYPASLTKMMTLYIIFEY------LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           PR  AS+TK MT Y+I          Q  ++ ++ +      +   + S + +K    +T
Sbjct: 552 PRPIASVTKAMTAYVILREKPLTGKGQGDRITIDQRTEDEYHSGKNSESVVEVKAGQKYT 611

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
             Q +  L+  SAN+V+     + +GSE  F   M   A  +GM++T+Y + SGL     
Sbjct: 612 QRQLLELLMIPSANNVARLLARWHAGSEAAFVKKMQAAADDLGMKDTVYTDPSGLR-STT 670

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYT 245
           ++T  DQ  L     ++   + +  +  K +     R I N       +  + GIKTG +
Sbjct: 671 VSTPLDQLKLAEAAMQDE-VFREIVNTTKLKVPGIERTIYNSADKALLLDGVGGIKTGSS 729

Query: 246 RNSGFNIVTS 255
             +G N++ S
Sbjct: 730 TPAGGNLLWS 739


>gi|167838920|ref|ZP_02465697.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis MSMB43]
          Length = 349

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 28/190 (14%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           AS+TK+MT  ++ +     K  L+  I V+     Q+    S+L +   +  T +  +  
Sbjct: 123 ASVTKLMTAMVVLD----SKAPLDEPIEVTDDDRDQDKFTGSRLAIG--STLTRDDMLHI 176

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A   +  G    F   M+ KA+ +GM +T ++N +GL  K+ ++TARD 
Sbjct: 177 ALMASENRAAAALSRYYPGGRDAFVDAMNQKARSLGMVDTHFENPTGL-SKHNVSTARD- 234

Query: 195 AILGILLRKNFPQYYKYFSIRKFR----------YRNRIITNHNKLL-NKMHNIDGIKTG 243
                 L K     Y+Y  IR++            R     + N LL +   NI   KTG
Sbjct: 235 ------LVKMVEAAYQYPLIRQYSTDLKYDVDTGLRTLYYHSTNILLRDDDWNIGVQKTG 288

Query: 244 YTRNSGFNIV 253
           Y + SG  +V
Sbjct: 289 YIKESGICLV 298


>gi|227432674|ref|ZP_03914647.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227351556|gb|EEJ41809.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 444

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 124/276 (44%), Gaps = 39/276 (14%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAAT 112
           S++V+D+   Q+ G K    +   AS +KM+T Y + + ++S K+  +T +P+ SK+  +
Sbjct: 59  SALVVDLTTGQILGQKNSSKQVAIASQSKMLTAYGVLKSIKSGKIKWSTMVPITSKSDLS 118

Query: 113 QNPSKLY----LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
           +  S ++    +K     +  +    +   SAND + A GEF++   +     + + AK+
Sbjct: 119 KEDSHMFSHIAIKAGDKVSVRELYDVMFANSANDAAFALGEFVTPKGETTQQTLESWAKE 178

Query: 169 IGMQNTIYKNASGLHD----KNQITTARDQAI-------LGILLRK------NFPQYYKY 211
           + +  + + N++G  +    +N+I++A   A        L ++ R       +  Q  K 
Sbjct: 179 LHLSGSQWYNSAGQVNENTFENEISSAPKTASNKASNQQLAMIARAILELDPSLRQLSKK 238

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHN------------IDGIKTGYTRNSGFNIVTSLRYK 259
            +I      N ++T+       M              I+G+KTG +  SG      ++ K
Sbjct: 239 LTISYHMTPNFVVTDKTDYWQLMTETMPNLSNPNQLTIEGLKTGSSPESGAGFTGLIKDK 298

Query: 260 DD-PIVAVVMGMPT---SQERDQKALELITSFLEKK 291
           +    + VV G+       +R Q++L ++   L +K
Sbjct: 299 NGHEFITVVNGIANYMDETKRYQESLRIVDQVLAQK 334


>gi|227549943|ref|ZP_03979992.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227077959|gb|EEI15922.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 421

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 100/225 (44%), Gaps = 26/225 (11%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++  ++   K    RY PAS+ K++   +  +     +L L+ Q+ VS  +A    
Sbjct: 98  LVADLDTGEVVAMKDPHGRYRPASIIKVLLALVAID-----ELPLDKQVTVSAESANMEG 152

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S   +     +T    +  L+  S ND + A  + + G E     + +  A+++GM +T 
Sbjct: 153 SAAGIGAGGVYTVNDLLHGLLMASGNDTAHALAQELGGDEATLQKVNA-LAQQLGMNDTR 211

Query: 176 YKNASGLHDKNQITTARDQAI-----LG------ILLRKNFPQYYKYFSIRKFRYRNRII 224
               +GL      ++A D A+      G      I+  +++P +  +  +  F      +
Sbjct: 212 VATYTGLDRPGMSSSAWDMALAYRAAFGNETFARIVDTQSYP-FPGFDDLPGFE-----L 265

Query: 225 TNHNKL-LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            N N L LN    I G KTGYT ++    V ++ +    +VAVV+
Sbjct: 266 WNDNALYLNDPEGIGG-KTGYTDDANHTFVGAVNHDGRRLVAVVL 309


>gi|167565134|ref|ZP_02358050.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           oklahomensis EO147]
          Length = 373

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 28/190 (14%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           AS+TK+MT  ++ +     K  L  +I V+     Q+    S+L +   T    +   +A
Sbjct: 147 ASVTKLMTAMVVLD----SKAPLEERIEVTDDDRDQDKFTGSRLAIGS-TLSRDDMLHIA 201

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           L+  S N  + A   +  G  + F   M+ KA+ +GM +T ++N +GL  K  ++TARD 
Sbjct: 202 LMA-SENRAAAALSRYYPGGRQAFVDAMNQKARSLGMIDTHFENPTGL-SKYNVSTARD- 258

Query: 195 AILGILLRKNFPQYYKYFSIRKF----RY-----RNRIITNHNKLLNKMHNID-GI-KTG 243
                 L K     Y+Y  IR++    +Y     R  +  +   +L +  + D G+ KTG
Sbjct: 259 ------LAKMVEAAYQYPLIRQYSTDLKYEVDTGRRTLYYHSTNILLRDEDWDIGVQKTG 312

Query: 244 YTRNSGFNIV 253
           Y R SG  +V
Sbjct: 313 YIRESGICLV 322


>gi|167574898|ref|ZP_02367772.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           oklahomensis C6786]
          Length = 373

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 28/190 (14%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           AS+TK+MT  ++ +     K  L  +I V+     Q+    S+L +   T    +   +A
Sbjct: 147 ASVTKLMTAMVVLD----SKAPLEERIEVTDDDRDQDKFTGSRLAIGS-TLSRDDMLHIA 201

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           L+  S N  + A   +  G  + F   M+ KA+ +GM +T ++N +GL  K  ++TARD 
Sbjct: 202 LMA-SENRAAAALSRYYPGGRQAFVDAMNQKARSLGMIDTHFENPTGL-SKYNVSTARD- 258

Query: 195 AILGILLRKNFPQYYKYFSIRKF----RYR----NRIITNHNK---LLNKMHNIDGIKTG 243
                 L K     Y+Y  IR++    +Y      R +  H+    L ++  +I   KTG
Sbjct: 259 ------LAKMVEAAYQYPLIRQYSTDLKYEVDTGRRTLYYHSTNILLRDEDWDIGVQKTG 312

Query: 244 YTRNSGFNIV 253
           Y R SG  +V
Sbjct: 313 YIRESGICLV 322


>gi|118386189|ref|XP_001026215.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila]
 gi|89307982|gb|EAS05970.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila SB210]
          Length = 1085

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 94/246 (38%), Gaps = 50/246 (20%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQI----------PVSKTAATQNPSKLYLKEKTYFT 127
           AS+TK+MT YI+ + L       N +I           VSK A+    +   L+     T
Sbjct: 598 ASITKIMTCYIVCDLLNKYDFKRNDEIKLTLKKDQIITVSKIASKMIGTSALLRHGDQLT 657

Query: 128 TEQGILALITRSANDVSTAFGEFIS--------------------------GSEKKFAIL 161
               +  L+  S ND + A  E +                             +K+F  +
Sbjct: 658 LWDLLHGLMLPSGNDAAFAISEHVGSLIYESSPIFQQKKYQNPKLVSCNPKAGQKEFIKV 717

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-- 219
           M+  A+K+ +Q T Y+N  GL +    + A D  IL     KN  QY++   ++   Y  
Sbjct: 718 MNQYAQKLKLQKTFYQNPHGLTNSKNKSCADDICILISHAMKN--QYFREI-VKTIEYTA 774

Query: 220 ---------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
                    R +   N NKLL       G+KTG T  +G  + +     +   V V++  
Sbjct: 775 KISNSRKGSREQTWENTNKLLKSSCYCIGVKTGITPAAGACLSSCFSINNRNFVIVILNT 834

Query: 271 PTSQER 276
            T + R
Sbjct: 835 LTLEMR 840


>gi|120402569|ref|YP_952398.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium vanbaalenii
           PYR-1]
 gi|119955387|gb|ABM12392.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium vanbaalenii
           PYR-1]
          Length = 403

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 97/225 (43%), Gaps = 27/225 (12%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQS-KKLHLNTQIPVSKTAATQN 114
           +V D++   +   +    R+ PAS+ K++T       +Q+   L L+  IP ++  A Q 
Sbjct: 99  LVADLDSGDVIAARDPHGRHRPASIIKVLT------AMQAINDLPLHKVIPGTEEDAAQE 152

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK----AKKIG 170
            +K+ +    +++    +  L+  S ND + A    + G +        NK    A K+G
Sbjct: 153 GTKVGVGPGGFYSINDLLHGLLMYSGNDAAHALAMQMGGMQTAL-----NKINALAGKLG 207

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYRNR-----I 223
            ++T     SGL      T+A D   +G+  R  +  P +    + R   +  R      
Sbjct: 208 ARDTRVATPSGLDGPGMSTSAYD---IGLFYRYAWQNPVFTDIVATRSSNFPGRDGAGYP 264

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           I N NKLL       G KTG+T ++G   V +       +VAV++
Sbjct: 265 IENDNKLLANYPGALGGKTGFTDDAGQTFVGAATRDGRRLVAVLL 309


>gi|307130596|ref|YP_003882612.1| D-alanyl-D-alanine carboxypeptidase [Dickeya dadantii 3937]
 gi|306528125|gb|ADM98055.1| D-alanyl-D-alanine carboxypeptidase [Dickeya dadantii 3937]
          Length = 317

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 101/226 (44%), Gaps = 21/226 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N++      +   P AS+TK+MT  ++ +   ++ L     + +S+T   +
Sbjct: 45  SAMVVDLRNNEVLYSANPDVVVPIASVTKLMTAMVVLD--ANQPLDERISVDISQTKEMK 102

Query: 114 NP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S++ L  +   +    +L  +  S N  + +      G  + F   M+ KA+ +GM 
Sbjct: 103 GVYSRVRLGSE--ISRHDMLLLALMSSENRAAASLAHHYRGGYQAFIAAMNAKARALGMT 160

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT------- 225
           +T Y   +GL   N ++TARD   L I  R    QY     +   + +N + T       
Sbjct: 161 HTRYVEPTGLSTSN-VSTARDLTKLLIASR----QYPLLSQLSTTQEKNAVFTQPSYSLP 215

Query: 226 --NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             N N L+ +   NI   KTG+T  +G  +V        P+  VV+
Sbjct: 216 FRNTNHLIYRQDWNIQLTKTGFTNQAGHCLVMRTVINGRPVSLVVL 261


>gi|223043679|ref|ZP_03613723.1| penicillin binding protein 4 [Staphylococcus capitis SK14]
 gi|222442957|gb|EEE49058.1| penicillin binding protein 4 [Staphylococcus capitis SK14]
          Length = 388

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 23/199 (11%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGI 132
           PASLTKMMT+Y+  + ++S K+H+  +I ++   A      N S + L+    +T +  +
Sbjct: 71  PASLTKMMTMYLTLDAVKSGKIHMKDKIKITSKQAQLSQKSNLSSVPLEAGQTYTVKDIL 130

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-------- 184
                 S+N  +   GE +SGS   F   M+ +AK   M++T + + +G           
Sbjct: 131 SQTALASSNAAALILGEKVSGSTSTFTDKMNQQAKTFHMKDTHFTSPAGADTELLGSSAP 190

Query: 185 ---KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM---- 234
              KNQ    +T++D  I+   + K  P+  K    +    + +   + N  L       
Sbjct: 191 QKYKNQGKTSSTSKDMNIMMYHMIKEHPEILKTTQNKSDTQKGQSFESTNLSLKGQPKYY 250

Query: 235 HNIDGIKTGYTRNSGFNIV 253
              DG+KTG T +SG+++ 
Sbjct: 251 KGTDGLKTG-TSDSGYSLA 268


>gi|288576057|ref|ZP_05978110.2| penicillin-binding protein 7 [Neisseria mucosa ATCC 25996]
 gi|288566309|gb|EFC87869.1| penicillin-binding protein 7 [Neisseria mucosa ATCC 25996]
          Length = 313

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 103/225 (45%), Gaps = 20/225 (8%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILA 134
           AS++K+M+  I+ +     +L +N  I ++     +     S+L +   T  T  + +  
Sbjct: 99  ASISKLMSAMIVLD----ARLDMNEPITITADEIDRLKGTGSRLAIG--TTLTRGELLHL 152

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD- 193
            +  S N  + A G    G    F   M+ KA+ +GM ++ +   +GL+ +N ++TA D 
Sbjct: 153 SLMSSENRATHALGRTYPGGMSAFVAAMNAKAQSLGMYSSRFYEPTGLNFQN-VSTANDL 211

Query: 194 -----QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK-MHNIDGIKTGYTRN 247
                 A    L+ KN    Y        R   +   N N L+ +   NI+  KTGY R 
Sbjct: 212 NRMVAAASKYPLINKNSTSNYGSVWTANGRQNYK---NSNALVREGSWNIELQKTGYIRE 268

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +G ++V     ++ PI  V++  PTS  R   A ++ +  L++++
Sbjct: 269 AGRSMVVKANVQNQPITIVLLNSPTSTTRVNDARKIESWMLQRRS 313


>gi|323526624|ref|YP_004228777.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. CCGE1001]
 gi|323383626|gb|ADX55717.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. CCGE1001]
          Length = 391

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 104/252 (41%), Gaps = 43/252 (17%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N  +    K      P AS+TK+MT  ++     
Sbjct: 120 VGQAFGLHETPDALMLRSSVAYVVDQNTGEPLFDKNSRAVVPIASITKLMTAMVV----- 174

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLY-------LKEKTYFTTEQGILALITRSANDVSTAF 147
                L+++ P+S      +  + Y       L   +  + E  +   +  S N  + A 
Sbjct: 175 -----LDSKEPMSDQLEVTDEDRDYEKNTGSRLSVGSVLSREDMLHIALMASENRAAAAL 229

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
             +  G    F   M+ KA+++GM +T ++N +GL  +N +++ARD       L K    
Sbjct: 230 SRYYPGGRPAFLAAMNAKARQLGMTDTHFENPTGLTSQN-VSSARD-------LVKMVNA 281

Query: 208 YYKYFSIRKFRY----------RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSL 256
            Y+Y  IRKF            R     + N L+ N   +I   KTG+   +G  +V   
Sbjct: 282 AYQYPLIRKFSTDHSYEVYTGKRTLAYNSTNALVRNPTWDIGLQKTGFINEAGECLVMQA 341

Query: 257 RYKDDPIVAVVM 268
                P+V V++
Sbjct: 342 NIHGRPMVMVLL 353


>gi|239942599|ref|ZP_04694536.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           roseosporus NRRL 15998]
 gi|239989058|ref|ZP_04709722.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           roseosporus NRRL 11379]
 gi|291446061|ref|ZP_06585451.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces roseosporus NRRL
           15998]
 gi|291349008|gb|EFE75912.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces roseosporus NRRL
           15998]
          Length = 299

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 21/231 (9%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFT 127
           D  R   S TK+MT  ++   L  K ++L +++ + K  +    ++N S   L      T
Sbjct: 66  DTRRATGSTTKIMTALVV---LSQKNVNLKSKVTIQKAYSDYIVSKNASSARLIVGDKVT 122

Query: 128 TEQGILALITRSANDVSTAFGE-FISGSE-----KKFAILMSNKAKKIGMQNTIYKNASG 181
             Q +  L+  S  D + A  + F SGS      K F   M++ AK + ++NT + +  G
Sbjct: 123 VGQLLYGLMLPSGCDAAYALADKFGSGSTRAARVKSFIGKMNSTAKSLKLKNTRFDSFDG 182

Query: 182 LHDKNQITTARDQAILGILLRKN--FPQYYKYFSIRK------FRYRNRIITNHNKLLNK 233
           + + N  +T RD   +     KN  F    K  S ++        YR    TN NKLL  
Sbjct: 183 IGNGNNYSTPRDLTKIASQAMKNSTFRSVVKTKSTKQKVTTKSGGYRYMSWTNTNKLLGS 242

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                G+KTG    + + +V +   K   ++  V+   +   R   A +++
Sbjct: 243 YSGATGVKTGSGPTAKYCLVFAATRKGKTVIGTVLTSTSEANRTADAKKMM 293


>gi|333009574|gb|EGK29026.1| D-alanyl-D-alanine carboxypeptidase dacC domain protein [Shigella
           flexneri K-272]
 gi|333020501|gb|EGK39764.1| D-alanyl-D-alanine carboxypeptidase dacC domain protein [Shigella
           flexneri K-227]
          Length = 147

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 6/89 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTY 125
           DE   PASLTK+MT Y++ + L++ K+ L   + V K A AT NP     S ++LK    
Sbjct: 59  DEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQ 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGS 154
            +       +I +S ND   A  ++++GS
Sbjct: 119 VSVADLNKGVIIQSGNDACIAPADYVAGS 147


>gi|167580237|ref|ZP_02373111.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis TXDOH]
          Length = 355

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 111/243 (45%), Gaps = 48/243 (19%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +  +++I+ N N++           AS+TK+MT  +           L+T+ P+S+    
Sbjct: 124 RTGTVLIERNANRVVPI--------ASVTKLMTSMVA----------LDTRAPMSR---- 161

Query: 113 QNPSKLYLKEKTY--FTTEQ----GIL--------ALITRSANDVSTAFGEFISGSEKKF 158
             P ++  +++ Y  FT  +     +L        AL++ S N  + A      G    F
Sbjct: 162 --PLRVSAQDRDYEKFTGSRLKVGSVLPRRDMLHIALMS-SENRAAAALSRDYPGGRPAF 218

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-- 216
              M+ KA+ +GM++T + NA+GL  +N ++TARD + L +     +P + K FS     
Sbjct: 219 VAAMNRKARTLGMKHTHFVNATGLSPRN-VSTARDLSRL-VAAASRYP-HIKSFSTDTSK 275

Query: 217 --FRYRNRIITNHNKLLNKMHNIDGI--KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
             F  R ++   ++  L +  +   +  KTG+   +G  +V     +  P+  V++G P 
Sbjct: 276 TVFPGRGQLHYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVRGRPVDIVLLGAPG 335

Query: 273 SQE 275
            ++
Sbjct: 336 PRD 338


>gi|5759263|gb|AAD51058.1|AF175293_3 D,D carboxypeptidase [Enterococcus faecium]
          Length = 356

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 103/235 (43%), Gaps = 37/235 (15%)

Query: 77  PASLTKMMTLYIIFEYLQSK-KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           PAS  KM+      +Y   + ++ +  +I + ++    + S  +L +    T  Q ++AL
Sbjct: 126 PASTAKMIMALTALDYCSPEDEMKVGAEIEMIQS----DSSTAWLMKGDTLTVRQLLIAL 181

Query: 136 ITRSANDVSTAF----GEFISGS-----EKKFAILM---SNKAKKIGMQNTIYKNASGLH 183
           +  S ND +       G+ I+G      ++   + M   + KA  +G  N+ +    G  
Sbjct: 182 MLPSGNDAAYTLAVNTGKKIAGDKSLTHQQAIEVFMDKVNEKAVDLGATNSKFIAPDGYD 241

Query: 184 DKNQITTARDQAILGILLRKN---------FPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            + Q TTA D AI+      N         +  Y K+ + R+  Y     +N N+LL+  
Sbjct: 242 AEGQYTTAYDLAIIAKACLDNPIISEIVASYSSYEKWPNGREVTY-----SNSNELLDPN 296

Query: 235 H-----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                  + G+KTG +   G  IV++     +  + VVMG  T + R Q +++++
Sbjct: 297 SPYYRPEVIGLKTGTSSLGGACIVSAAVIDGETYICVVMG-STKESRFQDSVDIL 350


>gi|170016615|ref|YP_001727534.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc citreum KM20]
 gi|169803472|gb|ACA82090.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc citreum KM20]
          Length = 425

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 110/267 (41%), Gaps = 56/267 (20%)

Query: 34  ILFLSIIMISMASELHAKPKY----------SSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           ++F S+ +IS    + A P            S++V+D    Q+   +   +    AS +K
Sbjct: 7   VVFFSVGLISFVRIVSAAPSAKPIDLKESLTSAVVVDARTGQVLATRNATKLGMIASQSK 66

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPV-SKTAATQNP----SKLYLKEKTYFTTEQGILALIT 137
           M+T Y     +   KL  +T IP+ SK   +  P    S L +K   + T  +   A++T
Sbjct: 67  MLTAYAALRAIHDGKLTWDTPIPITSKADLSHQPKYVYSHLDIKAGDHLTVRELYNAMLT 126

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG-----------LHDKN 186
            SAND S A  E+++         + + A ++ + ++ + NA+G            H+  
Sbjct: 127 ISANDASFALSEYLTPKGMTTQAALQSWANELKLDHSKWYNAAGQVNGNAFENKIAHEPG 186

Query: 187 QITTARDQAILGILLRK--------------NFPQYYKYFSIR-------KFRYRN---R 222
           +         L +L R+              +F  Y    + R       +F +R+   +
Sbjct: 187 EAANLASAEHLAMLAREIIKLDPNIRTLGESDFISYKSASANRTVKLTTDQFLFRHQHSK 246

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSG 249
            ++N N L+     I+G+KTG T  SG
Sbjct: 247 KVSNPNHLI-----IEGLKTGSTPESG 268


>gi|298244964|ref|ZP_06968770.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
           racemifer DSM 44963]
 gi|297552445|gb|EFH86310.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
           racemifer DSM 44963]
          Length = 319

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 17/218 (7%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTEQGIL 133
           AS TK+MT  I  +       +L+ +I V + A         S   L     FT  + + 
Sbjct: 99  ASTTKIMTALIAIQ-----TGNLDQEITVKRDAYLHVIELGSSNAGLVPGEQFTLRELLY 153

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-QITTAR 192
            L+  S  D + A  + ++GS + F + M+  A ++ +  T Y N  GL  ++   ++A 
Sbjct: 154 GLMLPSGGDAAIAISDALAGSPENFVVRMNLFASRLHLFQTHYTNVDGLTSEDTHYSSAA 213

Query: 193 DQAILGILLRKNFPQYYKYFSIRKF------RYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           D   L      N P + +      +      ++     TN N LL+    + G+KTG+T 
Sbjct: 214 DLTRLTRYALTN-PIFRQIVDTPTYTLPTTKQHGPHTWTNTNTLLSTYKGMLGVKTGHTD 272

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +G+ +V   +     ++ VV+  P    RDQ   +L+
Sbjct: 273 LAGYCLVFEAQRNGHSLIGVVLNSPDQAIRDQDVSKLL 310


>gi|195953485|ref|YP_002121775.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933097|gb|ACG57797.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 407

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 22/209 (10%)

Query: 75  RYP-ASLTKMMTLYIIFEYLQSKKLHLN--------TQIPVSKTAA----TQNPSKLYLK 121
           ++P AS+ K+MT YII   L+   L +         TQ  V++  A     Q+  K+ L 
Sbjct: 85  QWPLASVAKIMTAYII---LKDHPLPIGQDGPTITVTQKEVNEYEAFKKDGQSVVKVALG 141

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
           EK   T  Q +  L+  SAN+ +     + +GS K F   M+  A+ +G+++T Y++ SG
Sbjct: 142 EK--LTERQLLEGLMIPSANNFAYILARWDAGSVKAFVDKMNKTAQSLGLKDTRYEDPSG 199

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-NRIITNHNKLLNKMHNIDGI 240
                 ++T +DQ  L   L    P +    ++ +       I  N N  L K  NI G+
Sbjct: 200 -ASAGTVSTPKDQFKL-TQLAMQIPTFRHMVAMPQVNLPIAGIQYNVNYDLGK-DNIVGV 256

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           KTG +  +G N V   +  +  I+ V+ G
Sbjct: 257 KTGSSLPAGANFVFDSKQGNIDILGVIFG 285


>gi|154267921|gb|ABS72056.1| D,D carboxypeptidase [Ruminococcus gauvreauii]
          Length = 356

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 103/235 (43%), Gaps = 37/235 (15%)

Query: 77  PASLTKMMTLYIIFEYLQSK-KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           PAS  KM+      +Y   + ++ +  +I + ++    + S  +L +    T  Q ++AL
Sbjct: 126 PASTAKMIMALTALDYCSPEDEMKVGAEIEMIQS----DSSTAWLMKGDTLTVRQLLIAL 181

Query: 136 ITRSANDVSTAF----GEFISGS-----EKKFAILM---SNKAKKIGMQNTIYKNASGLH 183
           +  S ND +       G+ I+G      ++   + M   + KA  +G  N+ +    G  
Sbjct: 182 MLPSGNDAAYTLAVNTGKKIAGDKSLTHQQAIEVFMDKVNEKAVNLGATNSKFVAPDGYD 241

Query: 184 DKNQITTARDQAILGILLRKN---------FPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            + Q TTA D AI+      N         +  Y K+ + R+  Y     +N N+LL+  
Sbjct: 242 AEGQYTTAYDLAIIAKACLDNPIISEIVASYSSYEKWPNGREVTY-----SNSNELLDPN 296

Query: 235 H-----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                  + G+KTG +   G  IV++     +  + VVMG  T + R Q +++++
Sbjct: 297 SPYYRPEVIGLKTGTSSLGGACIVSAAVIDGETYICVVMG-STKESRFQDSVDIL 350


>gi|33150032|gb|AAP97032.1| putative D-alanyl-D-alanine carboxypeptidase [Lactobacillus reuteri
           DSM 20016]
          Length = 162

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 7/126 (5%)

Query: 55  SSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAA 111
           ++I+ D +  Q+  +KQ  D+    AS+TK++T+ +I + +Q K+L  +TQ+ ++ + AA
Sbjct: 32  AAIMADASTGQII-YKQNVDKALPVASITKLLTILVIEDEIQQKQLSWDTQVKITPEIAA 90

Query: 112 TQNP---SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
             N    S + LK    ++    I A + +SA+  + A          +F + M  KAKK
Sbjct: 91  ISNDAAYSSIGLKSGQSYSVRTLINAALVKSADGATVALATATGDGTDEFNLKMMQKAKK 150

Query: 169 IGMQNT 174
           IGM  T
Sbjct: 151 IGMTKT 156


>gi|157370801|ref|YP_001478790.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Serratia
           proteamaculans 568]
 gi|157322565|gb|ABV41662.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Serratia
           proteamaculans 568]
          Length = 320

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 120/262 (45%), Gaps = 44/262 (16%)

Query: 32  GKILFLSIIMISMASELHAKPK-YSSIVIDVNKNQMTG----FKQDEPRYP-ASLTKMMT 85
           G IL L+++ I  A++  A    YS  V+ VN  Q TG     KQ     P ASLTK+MT
Sbjct: 59  GAILVLTLLFILPAAQAAAPLALYSKSVLVVN--QRTGKILYQKQANRVQPIASLTKLMT 116

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI-------LALITR 138
             +  +     K  L  ++ V  TAA ++   L  K  +  T    +       +AL++ 
Sbjct: 117 AMVTLD----SKRPLGNRMMV--TAADRD---LLKKTHSRLTIGSTLSRRDMLHIALMS- 166

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S N  ++A      G  K F   M+ KA+ IGM++  + + +GL  +N + +A D     
Sbjct: 167 SENRAASALSRNYPGGRKAFVAKMNQKARTIGMKHARFYDPTGLTPRN-VASAND----- 220

Query: 199 ILLRKNFPQYYKYFSIRKFRY---------RNRII-TNHNKLL-NKMHNIDGIKTGYTRN 247
             L K     Y+Y +IR+F           R +++  + N L+ N    I   KTG+T  
Sbjct: 221 --LLKMVNHAYRYQTIRRFSTDKQQIVRPGRGQLVYRSSNGLINNPTWKIQLQKTGFTDE 278

Query: 248 SGFNIVTSLRYKDDPIVAVVMG 269
           +G  +V     K  P+V +++G
Sbjct: 279 AGHCLVMRTLIKGQPVVIILLG 300


>gi|134281097|ref|ZP_01767806.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 305]
 gi|134247403|gb|EBA47488.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 305]
          Length = 478

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 112/244 (45%), Gaps = 50/244 (20%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +  +++I+ N N++           AS+TK+MT  +           L+T+ P+S+    
Sbjct: 247 RTGTVLIERNANRVMPI--------ASVTKLMTSMVA----------LDTRAPMSR---- 284

Query: 113 QNPSKLYLKEKTY--FTTEQ-GILALITR----------SANDVSTAFGEFISGSEKKFA 159
             P ++  +++ Y  FT  +  + ++++R          S N  + A      G    F 
Sbjct: 285 --PLRVSAQDRDYEKFTGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFV 342

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--- 216
             M+ KA+ +GM+ T + NA+GL  +N ++TARD + L +     +P+  K FS      
Sbjct: 343 AAMNRKARTLGMKRTHFVNATGLSPRN-VSTARDLSRL-VAAASRYPR-IKTFSTATSKT 399

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGI--KTGYTRNSGFNIVTSLRY--KDDPIVAVVMGMP 271
            F  R ++   ++  L +  +   +  KTG+   +G  +V  LRY  +  P+  V++G P
Sbjct: 400 VFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVV--LRYAVRGRPVDIVLLGAP 457

Query: 272 TSQE 275
              +
Sbjct: 458 GPHD 461


>gi|256390347|ref|YP_003111911.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Catenulispora
           acidiphila DSM 44928]
 gi|256356573|gb|ACU70070.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Catenulispora
           acidiphila DSM 44928]
          Length = 348

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 22/211 (10%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG- 131
           EP   AS+ K+MT Y++              I V + AA ++     L++++      G 
Sbjct: 118 EPVPIASVAKVMTAYVVLRDHPLSDGQAGPDIVVDQQAADES----SLRDESSAPVHAGQ 173

Query: 132 ------ILAL-ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
                 +L L +  SAN+V+   G + +G++  F   M+  A  +GM+NT Y + SGL D
Sbjct: 174 HLSERTLLELMLVPSANNVARLLGRWDAGTQDAFVAEMNAAAVSLGMKNTTYTDPSGL-D 232

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN---RIITNHNKLLNKMHNIDGIK 241
            +  +TA DQ  L  +   + P      +    +  +    ++TN + LL     + G K
Sbjct: 233 SSTRSTAVDQMQLAKVALTD-PVLLALTAEPATQVPDDPASLLTNTDALLGS-DGVVGGK 290

Query: 242 TGYTRNSGFNIVTS----LRYKDDPIVAVVM 268
           TG +  +G  ++ +    L  +D  ++ VV+
Sbjct: 291 TGSSTPAGGALMWAAHRTLDGEDHLVLGVVL 321


>gi|256556949|gb|ACU83571.1| D-alanyl-D-alanine carboxypeptidase [uncultured bacterium
           HF130_AEPn_2]
          Length = 307

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 113/232 (48%), Gaps = 16/232 (6%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           S+LH     S++++D+  N++      +   P AS+TK+MT  ++ +  Q+   +++  I
Sbjct: 32  SQLHIASG-SAMLVDLQTNKVIYASNPDVVVPIASVTKLMTGMVVLDAKQNMDEYIS--I 88

Query: 105 PVSKTAATQNP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            +S T   +   S++ L  +     ++ +L  +  S N  + +      G    F   M+
Sbjct: 89  NISDTPEMKGVFSRVKLNSE--MPRKEMLLITLMSSENRAAASLAHHYPGGYAAFIAAMN 146

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRY 219
            KAK +GM +T Y   +GL   N ++TARD + L    RK +P   +  + ++    FR 
Sbjct: 147 AKAKALGMNSTRYVEPTGLSIHN-VSTARDLSKLVQAARK-YPMLTQLSTTKEKTVSFRK 204

Query: 220 RNRII--TNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            N  +  +N + L+N+ + +I   KTG+T  +G  +V      + P+  V++
Sbjct: 205 PNYTLGFSNTDHLVNRANWDIKLTKTGFTNQAGHCLVLVTSMGNRPVSLVIL 256


>gi|15827291|ref|NP_301554.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium leprae TN]
 gi|221229769|ref|YP_002503185.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium leprae
           Br4923]
 gi|13092840|emb|CAC30200.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium leprae]
 gi|219932876|emb|CAR70785.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium leprae
           Br4923]
          Length = 411

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 24/224 (10%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D+N   +   +    R+ PAS+ K     ++        L+LN  +  +   A    
Sbjct: 108 LVADLNSGAVIAARDPHGRHRPASIIK-----VLLAMASINTLNLNKSVAGTAEDAAAEG 162

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK---KFAILMSNKAKKIGMQ 172
           +K+ + +   +T  Q +  L+ +S ND + +    + G ++   K  +L    A K+G Q
Sbjct: 163 TKVGVHDGGTYTINQLLHGLLMQSGNDAAHSLAMQLGGMQQALQKINVL----AAKLGGQ 218

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYRNRI------I 224
           +T     SGL      T+A D   +G+  R  +  P +    + R F +          +
Sbjct: 219 DTRVATPSGLDGPGMSTSAYD---IGLFYRYAWQNPSFSNIVATRTFNFPGPGDHPGYQL 275

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            N N+LL +     G KTGYT ++G   V +       ++AV++
Sbjct: 276 ENDNQLLYQYPGALGGKTGYTDDAGQTFVGAANRNGRRLMAVLL 319


>gi|269127199|ref|YP_003300569.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Thermomonospora curvata DSM 43183]
 gi|268312157|gb|ACY98531.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Thermomonospora curvata DSM 43183]
          Length = 305

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 114/266 (42%), Gaps = 39/266 (14%)

Query: 28  IQLMGKILFLSIIMISMA------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASL 80
           + L+G  L +S+     A      S + A+   S+++ +  K ++   +    + P  S+
Sbjct: 11  VPLVGATLLISVPAAPAAAAGAGPSGVKAR---SALLYEPAKRKIRWHRAGGTKRPIGSI 67

Query: 81  TKMMTLYIIFEYLQSKKL---------HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           TK MT  ++   L+S KL         H+N  +           S  +L+     T  Q 
Sbjct: 68  TKAMTAVVV---LRSGKLDRKITIKQKHINYAV-------RHGGSMAHLRPGDKLTARQL 117

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI--- 188
           + AL+  S  D +    +      + F   M+  A+ + M+ T Y N  GL         
Sbjct: 118 LRALLLPSGCDAAYVLADAYGPGWRNFVKKMNATARALNMKKTHYANFDGLPWPTPTAGY 177

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHN--KLLNKMHNIDGIKT 242
           +TA DQ  L     K  P++ K    R +R +    +R  T HN  +LL     ++G+KT
Sbjct: 178 STALDQTKLANYAFKKLPEFRKIVRTRTYRLKAGGGHRAYTWHNTNRLLGSFKGVNGVKT 237

Query: 243 GYTRNSGFNIV-TSLRYKDDPIVAVV 267
           GYT  +G++++  + R K   I AV+
Sbjct: 238 GYTSAAGYSLLFAATRGKRTLIGAVL 263


>gi|254190742|ref|ZP_04897249.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|157938417|gb|EDO94087.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 470

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 112/244 (45%), Gaps = 50/244 (20%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +  +++I+ N N++           AS+TK+MT  +           L+T+ P+S+    
Sbjct: 239 RTGTVLIERNANRVMPI--------ASVTKLMTSMVA----------LDTRAPMSR---- 276

Query: 113 QNPSKLYLKEKTY--FTTEQ-GILALITR----------SANDVSTAFGEFISGSEKKFA 159
             P ++  +++ Y  FT  +  + ++++R          S N  + A      G    F 
Sbjct: 277 --PLRVSAQDRDYEKFTGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFV 334

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--- 216
             M+ KA+ +GM+ T + NA+GL  +N ++TARD + L +     +P+  K FS      
Sbjct: 335 AAMNRKARTLGMKRTHFVNATGLSPRN-VSTARDLSRL-VAAASRYPR-IKTFSTATSKT 391

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGI--KTGYTRNSGFNIVTSLRY--KDDPIVAVVMGMP 271
            F  R ++   ++  L +  +   +  KTG+   +G  +V  LRY  +  P+  V++G P
Sbjct: 392 VFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVV--LRYAVRGRPVDIVLLGAP 449

Query: 272 TSQE 275
              +
Sbjct: 450 GPHD 453


>gi|134296314|ref|YP_001120049.1| murein-DD-endopeptidase [Burkholderia vietnamiensis G4]
 gi|134139471|gb|ABO55214.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Burkholderia vietnamiensis G4]
          Length = 383

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 103/247 (41%), Gaps = 32/247 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N  +    K      P AS++K+MT  ++ +   
Sbjct: 112 VGQAFGLHDTPDALALRSSVAYVVDQNTGEPLFDKNSHAVVPIASISKLMTAMVVLD--- 168

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  +  QI V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 169 -SKAPMTDQIEVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPG 227

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM +T ++N++GL   N +++ARD       L K     Y+Y  
Sbjct: 228 GRPAFIAAMNAKAKSLGMNDTHFENSTGLSSSN-VSSARD-------LVKMVNAAYQYPL 279

Query: 214 IRKFRY----------RNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           IR+F            R  +  + N L+  N   +I   KTG+   +G  +V        
Sbjct: 280 IRQFSTDRTYDVNTGKRTLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGR 339

Query: 262 PIVAVVM 268
           P+V V++
Sbjct: 340 PMVMVLL 346


>gi|15618582|ref|NP_224868.1| D-Ala-D-Ala carboxypeptidase [Chlamydophila pneumoniae CWL029]
 gi|15836204|ref|NP_300728.1| D-Ala-D-Ala carboxypeptidase [Chlamydophila pneumoniae J138]
 gi|16752369|ref|NP_444627.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila pneumoniae AR39]
 gi|33242029|ref|NP_876970.1| serine-type D-Ala-D-Ala carboxypeptidase [Chlamydophila pneumoniae
           TW-183]
 gi|4376972|gb|AAD18811.1| D-Ala-D-Ala Carboxypeptidase [Chlamydophila pneumoniae CWL029]
 gi|7189011|gb|AAF37962.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila pneumoniae AR39]
 gi|8979044|dbj|BAA98879.1| D-Ala-D-Ala carboxypeptidase [Chlamydophila pneumoniae J138]
 gi|33236539|gb|AAP98627.1| serine-type D-Ala-D-Ala carboxypeptidase [Chlamydophila pneumoniae
           TW-183]
          Length = 436

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 111/264 (42%), Gaps = 41/264 (15%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP----SKLYLKEKTYFTTEQ 130
           YPAS+TK+ T   I ++  +    L+T I V + A A+  P       Y     +  T+ 
Sbjct: 57  YPASMTKIATALFILKHYPTV---LDTLIKVKQDAIASITPQAKKQSGYRSPPHWLETDG 113

Query: 131 GIL---------------ALITRSANDVSTAFGEFISGSEKKFAILMSNKAK-KIGMQNT 174
             +               AL+  SAND +        GS +KF   ++   K +IG  +T
Sbjct: 114 STIQLHLREELLGWDLFHALLVCSANDAANVLAMACCGSVEKFMDKLNFFLKEEIGCTHT 173

Query: 175 IYKNASGLHDKNQITTARDQ-AILGILLRKNFPQYYKYFSIRKFR------YRNRIITNH 227
            + N  GLH  N  TT RD  +I+   L++  P +    S   ++      +  RI++  
Sbjct: 174 HFNNPHGLHHPNHYTTTRDLISIMRCALKE--PPFRGVISTTSYKIGATNLHGERILSPT 231

Query: 228 NKLL---NKMHNID--GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM--PTSQERDQKA 280
           NKLL   +  H     G KTG T+ +G N++ +    +  +V +  G   P S +  Q  
Sbjct: 232 NKLLLPGSTYHYPPALGGKTGTTKTAGKNLIMAAEKNNRLLVTIATGYSGPVS-DLYQDV 290

Query: 281 LELITSFLEKKTLKHQQTHRKDNL 304
           + L  +   +  L+ +     D L
Sbjct: 291 IALCETVFNEPLLRKELVPPSDCL 314


>gi|91792455|ref|YP_562106.1| D-alanyl-D-alanine endopeptidase [Shewanella denitrificans OS217]
 gi|91714457|gb|ABE54383.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Shewanella denitrificans OS217]
          Length = 298

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 111/245 (45%), Gaps = 33/245 (13%)

Query: 29  QLMGKILFLSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKM 83
           +++ K L L  I+  ++  ++A        S +++D+N +++      +   P AS+TK+
Sbjct: 12  RVLVKPLVLGAILFCLSPHIYAAQQELASTSGMLVDLNTDEVLYASNPDRVMPIASVTKL 71

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEK--TYFTTEQGILALITRSAN 141
           MT  +  +     KL L  +I + K   T+    +Y + +  +  + +  +L  +  S N
Sbjct: 72  MTAMVTLD----AKLPLEQKISI-KINETKEMRNVYSRVRIGSELSRKDMLLLALMSSEN 126

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
             + +      G    F   M++KAK +GM  + +   +GL  KN +++ARD  +L +  
Sbjct: 127 RAAASLAHHYPGGYAAFIRAMNDKAKALGMTKSSFVEPTGLSRKN-VSSARDLVML-LKA 184

Query: 202 RKNFPQYYKYFSIRK-------------FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
            + +P   +  S  K             FR  NR++  ++       NI   KTG+T ++
Sbjct: 185 SEGYPLLGELSSTDKKTVTFSNPWYKLDFRNSNRLVFKND------WNIQLTKTGFTNDA 238

Query: 249 GFNIV 253
           G  +V
Sbjct: 239 GRCLV 243


>gi|269302456|gb|ACZ32556.1| D-alanyl-D-alanine carboxypeptidase family protein [Chlamydophila
           pneumoniae LPCoLN]
          Length = 436

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 111/264 (42%), Gaps = 41/264 (15%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP----SKLYLKEKTYFTTEQ 130
           YPAS+TK+ T   I ++  +    L+T I V + A A+  P       Y     +  T+ 
Sbjct: 57  YPASMTKIATALFILKHYPTV---LDTLIKVKQDAIASITPQAKKQSGYRSPPHWLETDG 113

Query: 131 GIL---------------ALITRSANDVSTAFGEFISGSEKKFAILMSNKAK-KIGMQNT 174
             +               AL+  SAND +        GS +KF   ++   K +IG  +T
Sbjct: 114 STIQLHLREELLGWDLFHALLVCSANDAANVLAMACCGSVEKFMDKLNFFLKEEIGCTHT 173

Query: 175 IYKNASGLHDKNQITTARDQ-AILGILLRKNFPQYYKYFSIRKFR------YRNRIITNH 227
            + N  GLH  N  TT RD  +I+   L++  P +    S   ++      +  RI++  
Sbjct: 174 HFNNPHGLHHPNHYTTTRDLISIMRCALKE--PPFRGVISTTSYKIGATNLHGERILSPT 231

Query: 228 NKLL---NKMHNID--GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM--PTSQERDQKA 280
           NKLL   +  H     G KTG T+ +G N++ +    +  +V +  G   P S +  Q  
Sbjct: 232 NKLLLPGSTYHYPPALGGKTGTTKTAGKNLIMAAEKNNRLLVTIATGYSGPVS-DLYQDV 290

Query: 281 LELITSFLEKKTLKHQQTHRKDNL 304
           + L  +   +  L+ +     D L
Sbjct: 291 IALCETVFNEPLLRKELVPPSDCL 314


>gi|76810222|ref|YP_332685.1| murein-DD-endopeptidase [Burkholderia pseudomallei 1710b]
 gi|76579675|gb|ABA49150.1| murein-DD-endopeptidase [Burkholderia pseudomallei 1710b]
          Length = 452

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 112/244 (45%), Gaps = 50/244 (20%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +  +++I+ N N++           AS+TK+MT  +           L+T+ P+S+    
Sbjct: 221 RTGTVLIERNANRVMPI--------ASVTKLMTSMVA----------LDTRAPMSR---- 258

Query: 113 QNPSKLYLKEKTY--FTTEQ-GILALITR----------SANDVSTAFGEFISGSEKKFA 159
             P ++  +++ Y  FT  +  + ++++R          S N  + A      G    F 
Sbjct: 259 --PLRVSAQDRDYEKFTGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFV 316

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--- 216
             M+ KA+ +GM+ T + NA+GL  +N ++TARD + L +     +P+  K FS      
Sbjct: 317 AAMNRKARTLGMKRTHFVNATGLSPRN-VSTARDLSRL-VAAASRYPR-IKTFSTATSKT 373

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGI--KTGYTRNSGFNIVTSLRY--KDDPIVAVVMGMP 271
            F  R ++   ++  L +  +   +  KTG+   +G  +V  LRY  +  P+  V++G P
Sbjct: 374 VFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVV--LRYAVRGRPVDIVLLGAP 431

Query: 272 TSQE 275
              +
Sbjct: 432 GPHD 435


>gi|295676949|ref|YP_003605473.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. CCGE1002]
 gi|295436792|gb|ADG15962.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. CCGE1002]
          Length = 404

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 102/246 (41%), Gaps = 31/246 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  VID N  +    K      P AS+TK+MT  ++ +   
Sbjct: 133 VGQAFGLHETPDALMLRSSVAYVIDQNSGETLFDKNSRAVVPIASITKLMTAMVVLD--- 189

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  +  QI V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 190 -SKEPMTDQIEVTDEDRDYEKNTGSRLAVGSVLSREDMLHIALMASENRAAAALSRYYPG 248

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK++GM +T ++N +GL   N +++ARD       L K     Y+Y  
Sbjct: 249 GRPAFLAAMNAKAKQLGMNDTHFENPTGLTSMN-VSSARD-------LVKMVNAAYQYPL 300

Query: 214 IRKFRY----------RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           IRKF            R     + N L+ N   +I   KTG+   +G  +V        P
Sbjct: 301 IRKFSTDHSYEVYTGKRTLAYNSTNALVRNPTWDIGLQKTGFINEAGECLVMQATIHGRP 360

Query: 263 IVAVVM 268
           ++ V++
Sbjct: 361 MILVLL 366


>gi|242315730|ref|ZP_04814746.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106b]
 gi|242138969|gb|EES25371.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106b]
          Length = 428

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 109/242 (45%), Gaps = 46/242 (19%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +  +++I+ N N++           AS+TK+MT  +           L+T+ P+S+    
Sbjct: 197 RTGTVLIERNANRVMPI--------ASVTKLMTSMVA----------LDTRAPMSR---- 234

Query: 113 QNPSKLYLKEKTY--FTTEQ-GILALITR----------SANDVSTAFGEFISGSEKKFA 159
             P ++  +++ Y  FT  +  + ++++R          S N  + A      G    F 
Sbjct: 235 --PLRVSAQDRDYEKFTGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFV 292

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--- 216
             M+ KA+ +GM+ T + NA+GL  +N ++TARD + L +     +P+  K FS      
Sbjct: 293 AAMNRKARTLGMKRTHFVNATGLSPRN-VSTARDLSRL-VAAASRYPR-IKTFSTATSKT 349

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGI--KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            F  R ++   ++  L +  +   +  KTG+   +G  +V     +  P+  V++G P  
Sbjct: 350 VFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVRGRPVDIVLLGAPGP 409

Query: 274 QE 275
            +
Sbjct: 410 HD 411


>gi|254821197|ref|ZP_05226198.1| DacB [Mycobacterium intracellulare ATCC 13950]
          Length = 295

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 16/202 (7%)

Query: 52  PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  + I+ D++  Q + G  Q+    PAS  K +   ++ +      + L++ + V+  A
Sbjct: 45  PAQTWIIADLDSGQVLAGRDQNVAHPPASTIKTLLAQVVLD-----SVSLDSTV-VADVA 98

Query: 111 ATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            TQ   + + +K    +T  Q +  L+  S ND +      + G +   A  M+ KA  +
Sbjct: 99  DTQVECNCVGIKPGRTYTARQLLDGLLLVSGNDAANTLAHMLGGPDVTVA-KMNAKAASL 157

Query: 170 GMQNTIYKNASGLHDKNQI--TTARDQAIL--GILLRKNFPQYYKYFSIRKFRYRN--RI 223
           G  NT     SGL        +TA D A++    +    F Q     S   F   N  R+
Sbjct: 158 GATNTHAATPSGLDGPGGSGSSTAHDLAVIFRAAMANPVFAQITAEPS-AMFPGDNGDRL 216

Query: 224 ITNHNKLLNKMHNIDGIKTGYT 245
           ITN ++LL +     G KTG+T
Sbjct: 217 ITNQDELLQRYPGAIGGKTGFT 238


>gi|238753350|ref|ZP_04614713.1| D-alanyl-D-alanine endopeptidase [Yersinia ruckeri ATCC 29473]
 gi|238708303|gb|EEQ00658.1| D-alanyl-D-alanine endopeptidase [Yersinia ruckeri ATCC 29473]
          Length = 311

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 103/228 (45%), Gaps = 25/228 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N++      +   P AS+TK+MT  +  +     KL L+  I V     T+
Sbjct: 46  SAMVVDLKTNKVLYSNNPDHVVPIASITKLMTAMVTLD----AKLPLDEVISVD-IHQTK 100

Query: 114 NPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               ++  +K  +    +  +L  +  S N  + +      G    F   M+ KAK +GM
Sbjct: 101 ELKGVFSRVKVNSEINRKDMLLLALMSSENRAAASLAHHYPGGYSAFITAMNVKAKSLGM 160

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS----IRKFR-------YR 220
            +T +   +GL   N ++TARD + L +L  K +P   +  +    +  FR       +R
Sbjct: 161 THTHFVEPTGL-SINNVSTARDLSKL-LLATKQYPLIGQLSTSTEKMATFRNPSYTLPFR 218

Query: 221 NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N   TNH  + N   NI   KTG+T  +G  +V      + P+  VV+
Sbjct: 219 N---TNH-LVYNDKWNIQLTKTGFTNQAGHCLVMRTVINNRPVALVVL 262


>gi|167718649|ref|ZP_02401885.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei DM98]
          Length = 378

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 109/242 (45%), Gaps = 46/242 (19%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +  +++I+ N N++           AS+TK+MT  +           L+T+ P+S+    
Sbjct: 147 RTGTVLIERNANRVMPI--------ASVTKLMTSMVA----------LDTRAPMSR---- 184

Query: 113 QNPSKLYLKEKTY--FTTEQ-GILALITR----------SANDVSTAFGEFISGSEKKFA 159
             P ++  +++ Y  FT  +  + ++++R          S N  + A      G    F 
Sbjct: 185 --PLRVSAQDRDYEKFTGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFV 242

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--- 216
             M+ KA+ +GM+ T + NA+GL  +N ++TARD + L +     +P+  K FS      
Sbjct: 243 AAMNRKARTLGMKRTHFVNATGLSPRN-VSTARDLSRL-VAAASRYPR-IKTFSTATSKT 299

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGI--KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            F  R ++   ++  L +  +   +  KTG+   +G  +V     +  P+  V++G P  
Sbjct: 300 VFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVRGRPVDIVLLGAPGP 359

Query: 274 QE 275
            +
Sbjct: 360 HD 361


>gi|167901817|ref|ZP_02489022.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 378

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 109/242 (45%), Gaps = 46/242 (19%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +  +++I+ N N++           AS+TK+MT  +           L+T+ P+S+    
Sbjct: 147 RTGTVLIERNANRVMPI--------ASVTKLMTSMVA----------LDTRAPMSR---- 184

Query: 113 QNPSKLYLKEKTY--FTTEQ-GILALITR----------SANDVSTAFGEFISGSEKKFA 159
             P ++  +++ Y  FT  +  + ++++R          S N  + A      G    F 
Sbjct: 185 --PLRVSAQDRDYEKFTGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFV 242

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--- 216
             M+ KA+ +GM+ T + NA+GL  +N ++TARD + L +     +P+  K FS      
Sbjct: 243 AAMNRKARTLGMKRTHFVNATGLSPRN-VSTARDLSRL-VAAASRYPR-IKTFSTATSKT 299

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGI--KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            F  R ++   ++  L +  +   +  KTG+   +G  +V     +  P+  V++G P  
Sbjct: 300 VFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVRGRPVDIVLLGAPGP 359

Query: 274 QE 275
            +
Sbjct: 360 HD 361


>gi|323225526|gb|EGA09756.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323251306|gb|EGA35178.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
          Length = 210

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIV 253
           A++G  L ++ P  Y  +  ++F +      N N LL +   N+DGIKTG+T  +G+N+V
Sbjct: 2   ALIGQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLV 61

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            S       +++ VMG  T + R+ ++ +L+T
Sbjct: 62  ASATEGQMRLISAVMGGRTYKGRETESKKLLT 93


>gi|118469695|ref|YP_886773.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str.
           MC2 155]
 gi|118170982|gb|ABK71878.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str.
           MC2 155]
          Length = 296

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 16/202 (7%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEY--LQSKKLHLNTQIPVSK 108
           P  + +V D++  Q+   + +  R+ PAS  K +   ++ +   L S  +   T   V  
Sbjct: 46  PAETWVVADMDTGQILAGRGEYVRHAPASTIKTLLALVVLDEVPLDSTIVADETDTDVEC 105

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
             A   P + Y       T  Q + A +  S ND +      + G E   A  M+ KA +
Sbjct: 106 NCAGVAPGRTY-------TARQLLEAALLASGNDAANTLARMLGGPEAAVA-KMNAKAAQ 157

Query: 169 IGMQNTIYKNASGLHDKNQ--ITTARDQAIL--GILLRKNFPQYYKYFS-IRKFRYRNRI 223
           +G ++T     SGL        +T  D A++    +    F Q     S +   +  +R+
Sbjct: 158 LGARDTNVVTPSGLDAPGMPFWSTPHDLAVIFRAAMADPVFAQITAMPSTVFPAKTGDRV 217

Query: 224 ITNHNKLLNKMHNIDGIKTGYT 245
           + N N+LL++     G KTG+T
Sbjct: 218 LVNQNELLHRYPGTLGGKTGFT 239


>gi|53724420|ref|YP_104522.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei ATCC 23344]
 gi|121598323|ref|YP_992318.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei SAVP1]
 gi|124386019|ref|YP_001028989.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei NCTC 10229]
 gi|126449096|ref|YP_001081092.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei NCTC 10247]
 gi|126451732|ref|YP_001065404.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106a]
 gi|166999947|ref|ZP_02265776.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei PRL-20]
 gi|167744606|ref|ZP_02417380.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 14]
 gi|167823267|ref|ZP_02454738.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 9]
 gi|167844811|ref|ZP_02470319.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei B7210]
 gi|167910041|ref|ZP_02497132.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 112]
 gi|217419635|ref|ZP_03451141.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           576]
 gi|226194446|ref|ZP_03790044.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|237811386|ref|YP_002895837.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei MSHR346]
 gi|238563378|ref|ZP_00438972.2| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei GB8 horse 4]
 gi|254178365|ref|ZP_04885020.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei ATCC 10399]
 gi|254181346|ref|ZP_04887943.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1655]
 gi|254197054|ref|ZP_04903478.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei S13]
 gi|254201603|ref|ZP_04907967.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei FMH]
 gi|254206936|ref|ZP_04913287.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei JHU]
 gi|254357915|ref|ZP_04974188.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei 2002721280]
 gi|52427843|gb|AAU48436.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei ATCC 23344]
 gi|121227133|gb|ABM49651.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei SAVP1]
 gi|124294039|gb|ABN03308.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia mallei NCTC
           10229]
 gi|126225374|gb|ABN88914.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106a]
 gi|126241966|gb|ABO05059.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia mallei NCTC
           10247]
 gi|147747497|gb|EDK54573.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei FMH]
 gi|147752478|gb|EDK59544.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei JHU]
 gi|148027042|gb|EDK85063.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei 2002721280]
 gi|160699404|gb|EDP89374.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei ATCC 10399]
 gi|169653797|gb|EDS86490.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei S13]
 gi|184211884|gb|EDU08927.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1655]
 gi|217396939|gb|EEC36955.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           576]
 gi|225933531|gb|EEH29520.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|237505712|gb|ACQ98030.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei MSHR346]
 gi|238520825|gb|EEP84282.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei GB8 horse 4]
 gi|243064065|gb|EES46251.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei PRL-20]
          Length = 378

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 109/242 (45%), Gaps = 46/242 (19%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +  +++I+ N N++           AS+TK+MT  +           L+T+ P+S+    
Sbjct: 147 RTGTVLIERNANRVMPI--------ASVTKLMTSMVA----------LDTRAPMSR---- 184

Query: 113 QNPSKLYLKEKTY--FTTEQ-GILALITR----------SANDVSTAFGEFISGSEKKFA 159
             P ++  +++ Y  FT  +  + ++++R          S N  + A      G    F 
Sbjct: 185 --PLRVSAQDRDYEKFTGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFV 242

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--- 216
             M+ KA+ +GM+ T + NA+GL  +N ++TARD + L +     +P+  K FS      
Sbjct: 243 AAMNRKARTLGMKRTHFVNATGLSPRN-VSTARDLSRL-VAAASRYPR-IKTFSTATSKT 299

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGI--KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            F  R ++   ++  L +  +   +  KTG+   +G  +V     +  P+  V++G P  
Sbjct: 300 VFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVRGRPVDIVLLGAPGP 359

Query: 274 QE 275
            +
Sbjct: 360 HD 361


>gi|167562012|ref|ZP_02354928.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           oklahomensis EO147]
          Length = 379

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 110/244 (45%), Gaps = 34/244 (13%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK---- 108
           +  +++I+ N N++           AS+TK+MT  +           L+ + P+S+    
Sbjct: 148 RTGTVLIEKNANRVVPI--------ASVTKLMTSMVA----------LDARAPLSRPLRV 189

Query: 109 TAATQNPSKL---YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           +A  ++  KL    LK  +  +    +   +  S N  + A     +G    F   M+ K
Sbjct: 190 SAQDRDYEKLTGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYAGGRPAFVAAMNRK 249

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRN 221
           A+ +GM++T + NA+GL  +N ++TA D + L +     +P+  K FS       F  R 
Sbjct: 250 ARTLGMKHTHFVNATGLSPRN-VSTAHDLSRL-VAAASRYPR-IKTFSTDTSKTVFPGRG 306

Query: 222 RI-ITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           ++   N + L+     NI   KTG+   +G  +V     +  P+  V++G P S +    
Sbjct: 307 QLRYVNSDALVRAGDSNIMLQKTGFINEAGHCVVFRYAVRGRPVDIVLLGAPGSSDHIAD 366

Query: 280 ALEL 283
           A+++
Sbjct: 367 AMKI 370


>gi|53718694|ref|YP_107680.1| murein-DD-endopeptidase [Burkholderia pseudomallei K96243]
 gi|126441783|ref|YP_001058168.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 668]
 gi|167814810|ref|ZP_02446490.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 91]
 gi|254260216|ref|ZP_04951270.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1710a]
 gi|52209108|emb|CAH35050.1| murein-DD-endopeptidase [Burkholderia pseudomallei K96243]
 gi|126221276|gb|ABN84782.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           668]
 gi|254218905|gb|EET08289.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1710a]
          Length = 378

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 109/242 (45%), Gaps = 46/242 (19%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +  +++I+ N N++           AS+TK+MT  +           L+T+ P+S+    
Sbjct: 147 RTGTVLIERNANRVMPI--------ASVTKLMTSMVA----------LDTRAPMSR---- 184

Query: 113 QNPSKLYLKEKTY--FTTEQ-GILALITR----------SANDVSTAFGEFISGSEKKFA 159
             P ++  +++ Y  FT  +  + ++++R          S N  + A      G    F 
Sbjct: 185 --PLRVSAQDRDYEKFTGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFV 242

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--- 216
             M+ KA+ +GM+ T + NA+GL  +N ++TARD + L +     +P+  K FS      
Sbjct: 243 AAMNRKARTLGMKRTHFVNATGLSPRN-VSTARDLSRL-VAAASRYPR-IKTFSTATSKT 299

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGI--KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            F  R ++   ++  L +  +   +  KTG+   +G  +V     +  P+  V++G P  
Sbjct: 300 VFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVRGRPVDIVLLGAPGP 359

Query: 274 QE 275
            +
Sbjct: 360 HD 361


>gi|251790099|ref|YP_003004820.1| D-alanyl-D-alanine endopeptidase [Dickeya zeae Ech1591]
 gi|247538720|gb|ACT07341.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Dickeya zeae
           Ech1591]
          Length = 319

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 101/227 (44%), Gaps = 23/227 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N +      +   P AS+TK+MT  ++ +  Q     L+  I  S+T   Q
Sbjct: 45  SAMVVDLRNNDVLYSSNPDVVVPIASVTKLMTAMVVLDANQPLDERLSVDI--SQTKEMQ 102

Query: 114 NP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S++ L  +   +    +L  +  S N  + +      G  + F   M+ KAK +GM 
Sbjct: 103 GVYSRVRLGSE--ISRHDMLLLALMSSENRAAASLAHHYRGGYQAFIAAMNAKAKALGMT 160

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFP---------QYYKYFSIRKFR--YRN 221
           +T Y   +GL   N ++TARD   L ++  K +P         +    F+   +   +RN
Sbjct: 161 HTRYVEPTGLSTSN-VSTARDLTKL-LIASKQYPLLGQLSTSHEKTAVFTQPSYSLPFRN 218

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              TNH  +  +  NI   KTG+T  +G  +V        P+  VV+
Sbjct: 219 ---TNH-LIYRQDWNIQLTKTGFTNQAGHCLVMRTVINGRPVSLVVL 261


>gi|260221036|emb|CBA29200.1| D-alanyl-D-alanine endopeptidase [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 310

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 25/211 (11%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQ 113
           + V+D +  ++   K +    P AS+TK+MT  ++ E     +L ++  I +++    T+
Sbjct: 52  AFVVDQDTKEVLFSKNENAVLPIASITKLMTGVVVSE----ARLSMDETIEITQADVDTE 107

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   L+  T  +  + +   +  S N  + A G    G  + F  LM+ KA+ +GM +
Sbjct: 108 KGSSSRLRVGTELSRGELLHLALMASENRAAHALGRTFPGGLQHFVGLMNQKARILGMTD 167

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF--------RYRNRII- 224
           T Y   +GL+ +NQ ++A+D A L      N+   Y   ++R+            NR + 
Sbjct: 168 TQYVEPTGLNSRNQ-SSAKDLATL-----VNYA--YSDATLRELSTSTGYQVEVGNRTLQ 219

Query: 225 -TNHNKLL-NKMHNIDGIKTGYTRNSGFNIV 253
             N N+L+ N    I   KTGY   +G  +V
Sbjct: 220 YNNTNRLVKNPAWEIGLQKTGYITEAGQCLV 250


>gi|145588924|ref|YP_001155521.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047330|gb|ABP33957.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 342

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 105/249 (42%), Gaps = 39/249 (15%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP---ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           SS+ + VN++    + +  P      AS+TK+MT  ++ +     KL LN  I +     
Sbjct: 95  SSVAMVVNQDTKEVYFEKNPSVSLPIASITKLMTAMVVLD----SKLPLNETIVI----- 145

Query: 112 TQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
             N   +Y      L   T  + E  +   +  S N  +   G    G    F   M+ K
Sbjct: 146 --NEQDVYIYKHSRLAGGTALSREDALHLALMSSENRAAYTLGRNYPGGIPAFVDAMNRK 203

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY------ 219
           AK++GM ++ + + +GL  +N +++A D       L +     Y+Y  IR+F        
Sbjct: 204 AKELGMDHSHFADPTGLMSEN-VSSAED-------LTRMLNAAYQYKLIREFSTWPDLTM 255

Query: 220 ----RNRIITNHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
               R +   N N+L+       G+ KTG+   +G  +V   R  + P++ V +    +Q
Sbjct: 256 VIANRPQKFLNTNRLVRSGDMDIGLQKTGFINAAGKCLVMQARVNNTPLLLVFLDSVGTQ 315

Query: 275 ERDQKALEL 283
            R   A+ +
Sbjct: 316 SRFADAVRV 324


>gi|312796721|ref|YP_004029643.1| D-alanyl-D-alanine-endopeptidase [Burkholderia rhizoxinica HKI 454]
 gi|312168496|emb|CBW75499.1| D-alanyl-D-alanine-endopeptidase (EC 3.4.99.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 401

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 24/203 (11%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALI 136
           AS+TK+MT  ++ +     K  LN ++ V+      +  +   L   +  + E  +   +
Sbjct: 174 ASITKLMTAMVVLD----SKAPLNERLTVTDEDRDYEKGTGSRLSIGSTLSREDMLHIAL 229

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S N  + A   +  G    F + M+ KA ++GM  T ++NA+GL  +N +++ARD   
Sbjct: 230 MASENRAAAALSRYYPGGRPGFIVAMNRKAAELGMAQTHFQNATGLTSQN-VSSARD--- 285

Query: 197 LGILLRKNFPQYYKYFSIRKFRY----------RNRIITNHNKLL-NKMHNIDGIKTGYT 245
               L K     Y+Y  IR+F            R     + N L+ N   +I   KTG+ 
Sbjct: 286 ----LVKMVNAAYQYPLIRQFSTDRSYDVFTGKRTLAYNSTNALVRNASWDIGLQKTGFI 341

Query: 246 RNSGFNIVTSLRYKDDPIVAVVM 268
             +G  +V        P++ V++
Sbjct: 342 NEAGECLVMQATIHGRPVIMVLL 364


>gi|282600912|ref|ZP_05980106.2| serine-type D-Ala-D-Ala carboxypeptidase family protein
           [Subdoligranulum variabile DSM 15176]
 gi|282570823|gb|EFB76358.1| serine-type D-Ala-D-Ala carboxypeptidase family protein
           [Subdoligranulum variabile DSM 15176]
          Length = 445

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 30/165 (18%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A EL A   Y   V++++ N +   K  + +   ASLTKMMT  ++ E  Q +   L+T 
Sbjct: 36  APELTAPAGY---VVNLDTNIVVYDKNSDTQLQAASLTKMMTCLLMLEQYQDQ---LDT- 88

Query: 104 IPVSKTAATQNPSKLY--LKEKTYFTTEQGI------------LALITRSANDVSTAFGE 149
             ++ TA    PS +Y  + EKT   +   I             A++  SAN+ +    +
Sbjct: 89  --ITVTA----PSYIYDLIWEKTTNASTADIRKGETQTLRNLLYAMLLPSANEAAYIVAD 142

Query: 150 FI-SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           ++  GS   F  +M+N+A  IG   T + +  GL ++N +TTA+D
Sbjct: 143 YMGGGSIDNFVAMMNNEAAAIGCTGTTFADPCGLDERN-VTTAKD 186


>gi|325675587|ref|ZP_08155271.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus equi ATCC
           33707]
 gi|325553558|gb|EGD23236.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus equi ATCC
           33707]
          Length = 444

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 84/210 (40%), Gaps = 27/210 (12%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           ++ D++  Q+   K    RY PAS  K++   +  +     +L L+T I  +  AA+   
Sbjct: 125 VLSDLDTGQVLAAKDPHGRYRPASTIKVLLALVALD-----ELDLDTTIVANPEAASMEG 179

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S + L     ++  Q +  L+ RS ND + A  + + G +   A  M+ KA  +G  +T 
Sbjct: 180 SSVGLGAGGTYSNLQLMQGLVMRSGNDAAQALAQQLGGEQATVAK-MNAKAASLGASDTR 238

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYRNR----------- 222
             + SGL      T+  D   L +  R     P +    +     +              
Sbjct: 239 TASVSGLDGPGMSTSPYD---LALFFRAAMQNPTFAGLITTDTVMFPGHPADPTKPDDKP 295

Query: 223 ----IITNHNKLLNKMHNIDGIKTGYTRNS 248
                I N N+LL       G KTGYT ++
Sbjct: 296 VDPYPIFNDNQLLANYPGALGGKTGYTDDA 325


>gi|313885620|ref|ZP_07819370.1| serine-type D-Ala-D-Ala carboxypeptidase [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619350|gb|EFR30789.1| serine-type D-Ala-D-Ala carboxypeptidase [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 449

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 73/134 (54%), Gaps = 7/134 (5%)

Query: 55  SSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-- 110
           S++VI+ +  Q+  F+Q  D+      L+K++TLY++ + ++   + ++T++P+S  A  
Sbjct: 40  SAMVIEGHNGQIL-FEQNTDKLVEVGDLSKLLTLYLVLDAVKQGNISMDTEVPISDQAFY 98

Query: 111 ATQN--PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            +QN   + + L++   +  E  I A++ +SAN  + A  + I   E KF  LM  +  +
Sbjct: 99  ISQNYDINNVPLRQDYPYKVEDLIQAVVIQSANGATLALAQLIEPDEGKFVELMRQQLSQ 158

Query: 169 IGMQNTIYKNASGL 182
             + +    NA+G+
Sbjct: 159 WHLNDFEIFNATGM 172


>gi|167900376|ref|ZP_02487777.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 7894]
 gi|167924801|ref|ZP_02511892.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei BCC215]
          Length = 378

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 109/242 (45%), Gaps = 46/242 (19%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +  +++I+ N N++           AS+TK+MT  +           L+T+ P+S+    
Sbjct: 147 RTGTVLIEKNANRVMPI--------ASVTKLMTSMVA----------LDTRAPMSR---- 184

Query: 113 QNPSKLYLKEKTY--FTTEQ-GILALITR----------SANDVSTAFGEFISGSEKKFA 159
             P ++  +++ Y  FT  +  + ++++R          S N  + A      G    F 
Sbjct: 185 --PLRVSAQDRDYEKFTGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFV 242

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--- 216
             M+ KA+ +GM+ T + NA+GL  +N ++TARD + L +     +P+  K FS      
Sbjct: 243 AAMNRKARTLGMKRTHFVNATGLSPRN-VSTARDLSRL-VAAASRYPR-IKTFSTATSKT 299

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGI--KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            F  R ++   ++  L +  +   +  KTG+   +G  +V     +  P+  V++G P  
Sbjct: 300 VFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVRGRPVDIVLLGAPGP 359

Query: 274 QE 275
            +
Sbjct: 360 HD 361


>gi|296158343|ref|ZP_06841174.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. Ch1-1]
 gi|295891287|gb|EFG71074.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. Ch1-1]
          Length = 415

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 104/246 (42%), Gaps = 31/246 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  VID N  +    K      P AS+TK+MT  ++ +   
Sbjct: 144 VGQAFGLHETPDALMLRSSVAYVIDQNSGEPLFDKNSRAVVPIASITKLMTAMVVLD--- 200

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  +  QI V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 201 -SKEPMTDQIEVTDEDRDYEKNTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYFPG 259

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KA+++GM +T ++N +GL  +N +++ARD       L K     Y+Y  
Sbjct: 260 GRPAFLAAMNAKARQLGMTDTHFENPTGLTSQN-VSSARD-------LVKMVNAAYQYPL 311

Query: 214 IRKFRY----------RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           IR+F            R+    + N L+ N   +I   KTG+   +G  +V        P
Sbjct: 312 IRRFSTDHSYEVYTGKRSLAYNSTNALVRNPTWDIGLQKTGFINEAGECLVMQATIHGRP 371

Query: 263 IVAVVM 268
           ++ V++
Sbjct: 372 MIMVLL 377


>gi|291447193|ref|ZP_06586583.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces roseosporus NRRL
           15998]
 gi|291350140|gb|EFE77044.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces roseosporus NRRL
           15998]
          Length = 449

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 112/267 (41%), Gaps = 26/267 (9%)

Query: 30  LMGKILFLSIIMISMASELHAKPKY----SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMM 84
           L G+ L +S   +++   +   PK     S IV D     +        R P AS  KM+
Sbjct: 44  LGGERLSMSGSQVNLGPGVPVLPKGLTARSWIVADAENGDVLAAHNSHWRLPPASTMKML 103

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-LKEKTYFTTEQGILALITRSANDV 143
               +   LQ  + H  T+   S+ A     S L  +KE   +T     L +  RS ND 
Sbjct: 104 FADTVLPALQPTQTHKVTE---SELAGVGEGSSLVGIKEDHTYTVHDLWLGVFLRSGNDA 160

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG--ILL 201
                    G  +  A  M   A+++   +T+  +  G     Q+++A D  ++    + 
Sbjct: 161 VHVLASMYGGMPQTVAA-MQKHAEELQALDTVVVSPDGYDAPRQVSSAYDLTLIARSGMQ 219

Query: 202 RKNFPQYYKYFSI------RKFRYRNRI-ITNHNKLLNKMHNID------GIKTGYTRNS 248
           +K+F +Y    S       +K + R+   I N N+L+     +D      G+K GYT ++
Sbjct: 220 KKDFREYAATASADFPGEKKKGKKRDSFEIQNTNRLITGDIGVDPYKGIAGVKNGYTTHA 279

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           G N  T +  ++  ++ V +  P+++E
Sbjct: 280 G-NTFTGVAERNGKVLLVTVMNPSAEE 305


>gi|239990182|ref|ZP_04710846.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           roseosporus NRRL 11379]
          Length = 452

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 112/267 (41%), Gaps = 26/267 (9%)

Query: 30  LMGKILFLSIIMISMASELHAKPKY----SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMM 84
           L G+ L +S   +++   +   PK     S IV D     +        R P AS  KM+
Sbjct: 47  LGGERLSMSGSQVNLGPGVPVLPKGLTARSWIVADAENGDVLAAHNSHWRLPPASTMKML 106

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-LKEKTYFTTEQGILALITRSANDV 143
               +   LQ  + H  T+   S+ A     S L  +KE   +T     L +  RS ND 
Sbjct: 107 FADTVLPALQPTQTHKVTE---SELAGVGEGSSLVGIKEDHTYTVHDLWLGVFLRSGNDA 163

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG--ILL 201
                    G  +  A  M   A+++   +T+  +  G     Q+++A D  ++    + 
Sbjct: 164 VHVLASMYGGMPQTVAA-MQKHAEELQALDTVVVSPDGYDAPRQVSSAYDLTLIARSGMQ 222

Query: 202 RKNFPQYYKYFSI------RKFRYRNRI-ITNHNKLLNKMHNID------GIKTGYTRNS 248
           +K+F +Y    S       +K + R+   I N N+L+     +D      G+K GYT ++
Sbjct: 223 KKDFREYAATASADFPGEKKKGKKRDSFEIQNTNRLITGDIGVDPYKGIAGVKNGYTTHA 282

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           G N  T +  ++  ++ V +  P+++E
Sbjct: 283 G-NTFTGVAERNGKVLLVTVMNPSAEE 308


>gi|209522105|ref|ZP_03270754.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. H160]
 gi|209497459|gb|EDZ97665.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. H160]
          Length = 396

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 102/246 (41%), Gaps = 31/246 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  VID N  +    K      P AS+TK+MT  ++ +   
Sbjct: 125 VGQAFGLHDTPDALMLRSSVAYVIDQNSGESLFDKNSRAVVPIASITKLMTAMVVLD--- 181

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  +  QI V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 182 -SKEPMTDQIEVTDEDRDYEKNTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPG 240

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK++GM +T ++N +GL   N +++ARD       L K     Y+Y  
Sbjct: 241 GRPAFLAAMNAKAKQLGMNDTHFENPTGLTSMN-VSSARD-------LVKMVNAAYQYPL 292

Query: 214 IRKFRY----------RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           IRKF            R     + N L+ N   +I   KTG+   +G  +V        P
Sbjct: 293 IRKFSTDHSYDVYTGKRTLAYNSTNALVRNPTWDIGLQKTGFINEAGECLVMQATIHGRP 352

Query: 263 IVAVVM 268
           ++ V++
Sbjct: 353 MILVLL 358


>gi|307726448|ref|YP_003909661.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. CCGE1003]
 gi|307586973|gb|ADN60370.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. CCGE1003]
          Length = 415

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 18/154 (11%)

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           +AL++ S N  + A     +G    F   M+ KA+ +GM++T + N +GL   N ++TAR
Sbjct: 252 IALMS-SENRAAAALSRDYAGGRPGFVAAMNAKARALGMRHTRFVNGTGLSPHN-VSTAR 309

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI-----------K 241
           D A L +     +P    Y + R       +     +     HN + +           K
Sbjct: 310 DLARL-VAAASRYPLIRAYSTDRA----QLVFPGGRRASLSYHNSNALVRGGDRSIVLQK 364

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           TG+   +G  +V  +     PI  VV+G P  ++
Sbjct: 365 TGFINEAGHCVVVRMMVHGRPIDIVVLGAPGPRD 398


>gi|326201672|ref|ZP_08191543.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           papyrosolvens DSM 2782]
 gi|325988272|gb|EGD49097.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           papyrosolvens DSM 2782]
          Length = 440

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 29/170 (17%)

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----DKNQIT 189
           AL+  SAN+ +    E +   + KF   M+  A   G +NT + N  G+     D +  +
Sbjct: 110 ALLIVSANETANIISENLFNDKTKFLAEMNKFAADAGAKNTTFTNPCGIDEYEKDADHFS 169

Query: 190 TARDQAILGILLRKNFPQYYKYF---------SIRKFRYRNRIITNHNKLLNK------- 233
           +ARD A++     K +P + +           +  K +  N I+ N NKLL K       
Sbjct: 170 SARDLALIAKECLK-YPLFREIIGQKQLSTLPATNKHKTWN-ILNNTNKLLGKSFKYGPE 227

Query: 234 ------MHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQER 276
                  + I G+KTG T  +G N ++S   KD   +++VV+G+     R
Sbjct: 228 TGDDRNQYTITGLKTGSTSRAGANFISSAVNKDGLELISVVLGVNNKPNR 277


>gi|229591365|ref|YP_002873484.1| D-alanyl-D-alanine endopeptidase [Pseudomonas fluorescens SBW25]
 gi|229363231|emb|CAY50317.1| penicillin-binding protein 7 precursor [Pseudomonas fluorescens
           SBW25]
          Length = 307

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 108/225 (48%), Gaps = 19/225 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLN---TQIPVSKTA 110
           S++++D+  N++      +   P AS++K+MT  I+ E  Q+   +++   T  P  K  
Sbjct: 40  SAMLVDLQTNKVIYSSNPDVVVPIASVSKLMTGLIVLEAKQNMDEYIDINITDTPEMKGV 99

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            ++      +K  +    ++ +L  +  S N  + +      G    F   M+ KAK +G
Sbjct: 100 FSR------VKIGSQMPRKEMLLIALMSSENRAAASLAHHYPGGYAAFIAAMNAKAKALG 153

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRII-- 224
           M +T Y   +GL   N ++TARD + L +   +++P   +  + ++    FR  N  +  
Sbjct: 154 MTSTHYVEPTGLSIHN-VSTARDLSKL-LAAARHYPLLSQLSTTKEKTVSFRKPNYTLGF 211

Query: 225 TNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +N + L+N+ + +I   KTG+T  +G  +V      + P+  V++
Sbjct: 212 SNTDHLINRANWDIKLTKTGFTNQAGHCLVLVTSMGNRPVSLVIL 256


>gi|119773214|ref|YP_925954.1| D-alanyl-D-alanine endopeptidase [Shewanella amazonensis SB2B]
 gi|119765714|gb|ABL98284.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Shewanella amazonensis SB2B]
          Length = 303

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 100/226 (44%), Gaps = 36/226 (15%)

Query: 50  AKP-----KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           AKP      YS++++D   N++          P AS++K+MT  +  +     KL L  +
Sbjct: 31  AKPTQELASYSALLVDTKTNEVLYASNPHQVVPIASISKLMTAMVTLD----AKLPLGEK 86

Query: 104 IPVSKTAATQNP------SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           I V       NP      S++ L   +  + ++ +L  +  S N  +T       G  + 
Sbjct: 87  IAVE---VKDNPEMKNVVSRIRLG--STLSRKEAMLLTLMSSENRAATTLAHHYPGGYQA 141

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQIT---------TARDQAILGILLRKNFPQY 208
           F   M+ KAK +GM NT +   +GL   N  T          A+D  +LG L   + P  
Sbjct: 142 FVKAMNAKAKALGMTNTRFVEPTGLSVHNVSTAADLVKLLKAAQDYPLLGQL--SSTPS- 198

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIV 253
            K  +  K RY +    N N+L+NK + +I   KTG+T  +G  +V
Sbjct: 199 -KSVTFGKPRY-SLAFYNTNRLVNKDNWDIRLTKTGFTDAAGHCLV 242


>gi|23007783|ref|ZP_00049502.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 137

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 6/110 (5%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---- 110
           +I+ID     +   K  DEP  PAS+ K+MT  I+F  ++  +L L+++  V++ A    
Sbjct: 27  AILIDAESGSVLFEKAADEPFSPASMAKLMTAEIVFRAIKEGRLSLDSEFTVTEDAWRRG 86

Query: 111 -ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            A    S ++ +  +       +  LI +S ND +    E ++G+E+ FA
Sbjct: 87  GAGGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDAAITIAENMAGTEEAFA 136


>gi|167772343|ref|ZP_02444396.1| hypothetical protein ANACOL_03720 [Anaerotruncus colihominis DSM
           17241]
 gi|167665446|gb|EDS09576.1| hypothetical protein ANACOL_03720 [Anaerotruncus colihominis DSM
           17241]
          Length = 516

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 89/198 (44%), Gaps = 43/198 (21%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTY---------F 126
           +PASLTK+MT  +  E     K             A     K+Y++   Y         +
Sbjct: 103 HPASLTKIMTAIVALESGHDLK-------------AETTDLKVYIQNYIYNQQAGGGGIY 149

Query: 127 TTEQGIL-----ALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNAS 180
             +Q +L     A++ +S N+ S    ++I  GS + F  +M+ KAK+IG  NT + N S
Sbjct: 150 QGDQYVLYDLLNAMLIQSVNEASMMIADYIGNGSIEDFVAMMNQKAKEIGAMNTHFGNPS 209

Query: 181 GLHDKNQ--ITTARDQAILGILLRKN--FPQYYK---YFSIRKFRYRNRI-ITNHNKLL- 231
           GL+ +++   TTA D A++     +N  F +      Y S    RY   I  T  NK++ 
Sbjct: 210 GLYVESEESYTTAYDMALIAQYAMQNNDFAEIVSRTAYTSQPTTRYPEGITWTTTNKMMI 269

Query: 232 -NKM-----HNIDGIKTG 243
            N+        I GIKTG
Sbjct: 270 PNQWEGYYYEGIKGIKTG 287


>gi|145294853|ref|YP_001137674.1| hypothetical protein cgR_0800 [Corynebacterium glutamicum R]
 gi|140844773|dbj|BAF53772.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 436

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 18/221 (8%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++  ++   K    RY PAS+ K++   +  +     +L+  T +  +  AA    
Sbjct: 131 MVFDIDSGEIIAAKDPHGRYRPASIIKVLLSLVAID-----ELNPTTVVTGTMEAANIEG 185

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S++ + E   +T +Q +  L+  S ND +    + + G +     + +  AK++G Q+T 
Sbjct: 186 SRVGVGEGGQYTVDQLLHGLLLASGNDAAYLLAQELGGDQATLEKVNA-LAKELGTQDTF 244

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI------ITNHNK 229
               SGL      T+A D +++     +N P +    S     +          + N N 
Sbjct: 245 VATYSGLDAPGMSTSAYDMSLIYQHAWQN-PVFESIISTDHIDFPGWGDNEGFQVWNDNA 303

Query: 230 LLNKMHNIDGI--KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           L   M++ DGI  KTGYT ++    V  L      + AV++
Sbjct: 304 LF--MNDPDGIGGKTGYTDDANHTFVGGLDRGGRRLAAVLL 342


>gi|228979140|ref|ZP_04139486.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
 gi|228780588|gb|EEM28809.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
          Length = 194

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 79/144 (54%), Gaps = 22/144 (15%)

Query: 162 MSNKAKKIGM-QNTIYKNASGL-HDKNQ--ITTARDQAILGILLRKNFPQYYKY--FSIR 215
           M+ KAK++ + Q + + N++G+ HD N+   TTA D A L   L K+FP        +  
Sbjct: 1   MNKKAKELQLLQPSPFLNSTGINHDTNKQSTTTAIDAAKLAARLVKDFPDVLNITKLTSY 60

Query: 216 KFRYRNRIITNHNKL---LN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           +F +++  + N NK+   LN   K+  +DG++T ++ N  ++ V++ +  D  +++V++ 
Sbjct: 61  QFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLGDTRLISVIL- 119

Query: 270 MPTSQERDQKALELITSFLEKKTL 293
                + D++ +    SF+E K L
Sbjct: 120 -----DADEENI----SFIETKKL 134


>gi|289770578|ref|ZP_06529956.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
 gi|289700777|gb|EFD68206.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
          Length = 260

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 97/233 (41%), Gaps = 24/233 (10%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV----SKTAATQNPSKLYLKEKTYFT 127
           D  R   S TK+MT  ++   L   KL+L+ ++ +    S    ++N S   L      T
Sbjct: 26  DTRRSTGSTTKIMTAKVV---LSQPKLNLDAKVTIQMAYSDYIVSKNASSARLIVGDKVT 82

Query: 128 TEQGILALITRSANDVSTAFGE-FISGSE-----KKFAILMSNKAKKIGMQNTIYKNASG 181
             Q +  L+  S  D + A  + F SG       K F   M+  AK +G++NT + +  G
Sbjct: 83  VRQLLYGLMLPSGCDAAYALADKFGSGRTRAARVKSFIGKMNATAKSLGLKNTHFDSFDG 142

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI----------ITNHNKLL 231
           + +    +T RD   +     KN   +      +K+  + R            TN N LL
Sbjct: 143 IGNGKNYSTPRDLTKIASSAMKN-STFRTIVKTKKYTAKTRTKKGGTRTMAPWTNTNTLL 201

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                  G+KTG    + + +V +   K   ++  V+   +S +R + A +L+
Sbjct: 202 GSYSGAIGVKTGSGPEAKYCLVFAATRKGKTVIGTVLASSSSAQRAKDATKLM 254


>gi|237747720|ref|ZP_04578200.1| D-alanyl-D-alanine-endopeptidase [Oxalobacter formigenes OXCC13]
 gi|229379082|gb|EEO29173.1| D-alanyl-D-alanine-endopeptidase [Oxalobacter formigenes OXCC13]
          Length = 397

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 99/221 (44%), Gaps = 13/221 (5%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLN-TQIPVSKTAAT 112
           +++++D +K ++   K      P AS+TK+MT  ++ E +Q     L  TQ  V     T
Sbjct: 145 AALIVDESKLEILFEKNANIALPMASVTKLMTALVVVESMQDMNEILEITQDDVDMLKHT 204

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
            +     LK  T  +    +   +  S N  + A G    G  K F   M+ KA+ +GM 
Sbjct: 205 GS----RLKVGTRMSRGNLLHLALMSSENRAAAALGRNYPGGLKGFVSAMNIKAQVLGMS 260

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY-----FSIRKFRYRNRIITNH 227
           ++ Y ++SGL   N + +ARD A L ++    +P   KY     +S+    ++ +  + +
Sbjct: 261 DSNYVDSSGLSSGN-VASARDLAKL-VMAASQYPILRKYSTDTHYSVDDGLHQLQYGSTN 318

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             + N    I   KTGY   +G  +V        PIV V +
Sbjct: 319 ALVHNPNWQIQLQKTGYISEAGQCLVMKAIIDGRPIVMVFL 359


>gi|313113074|ref|ZP_07798708.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624612|gb|EFQ07933.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 427

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 18/198 (9%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTT 128
           D+ +Y ASLTK+MT  ++ E    K L+    +P + T      QN +   +  +   T 
Sbjct: 61  DQQQYVASLTKLMTALLLLE--SGKDLNGEVTVPTALTQEFRDIQNANGTTMGLRIGETV 118

Query: 129 EQGIL--ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
            +  L  A++  SAND ++     + GS   F   M+ +A+++G   T +  A GL D  
Sbjct: 119 RRIDLLNAMLIVSANDAASVIAYDVGGSVLDFVKQMNVRAQELGCTGTNFTCAHGLFDYG 178

Query: 187 QITTARDQAILGILLRKN--FPQYYKYFS----IRKFRYRNRIITNHNKLLNKMHN---- 236
            ++TA+D A +      N  F Q     S        R     I++ N L+N        
Sbjct: 179 NVSTAQDLAKIAAACAANQTFAQVAGTASYVLPATNLRKAEHTISSSNSLMNSESANYRE 238

Query: 237 -IDGIKTGYTRNSGFNIV 253
            +  +K G+T  +G  IV
Sbjct: 239 YVRWVKGGFTTLAGRCIV 256


>gi|238749857|ref|ZP_04611361.1| D-alanyl-D-alanine endopeptidase [Yersinia rohdei ATCC 43380]
 gi|238711786|gb|EEQ04000.1| D-alanyl-D-alanine endopeptidase [Yersinia rohdei ATCC 43380]
          Length = 311

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 102/225 (45%), Gaps = 19/225 (8%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++VID+  N++      DE    AS+TK+MT  ++ +     KL L+  I V     T+
Sbjct: 46  SAMVIDLQTNKVIYANNADEVVPIASITKLMTAMVVLD----AKLPLDEIISVD-IHQTK 100

Query: 114 NPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               ++  ++  +  + +  +L  +  S N  + +      G    F   M+ KAK +GM
Sbjct: 101 EMKGVFSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNAKAKSLGM 160

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS----IRKFRYRNRII--- 224
             T Y   +GL  +N ++TARD   L ++  K +P   +  +    +  FR  N  +   
Sbjct: 161 TKTRYVEPTGLSIEN-VSTARDLTKL-LVATKQYPLIGQLSTTTEKMATFREPNYTLPFR 218

Query: 225 -TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            TNH  + N   NI   KTG+T  +G  +       + P+  VV+
Sbjct: 219 NTNH-LVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPVALVVL 262


>gi|167848574|ref|ZP_02474082.1| family S11 unassigned peptidase [Burkholderia pseudomallei B7210]
          Length = 349

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           AS+TK+MT  ++ +        L+ +I V+     Q+    S+L +   +  + +  +  
Sbjct: 123 ASVTKLMTAMVVLD----SNAPLDERIEVTDDDRDQDKFTGSRLAIG--SALSRDDMLHI 176

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A   +  G  + F   M+ KA+ +GM +T ++N +GL  K+ +++ARD 
Sbjct: 177 ALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVDTYFENPTGL-SKHNVSSARD- 234

Query: 195 AILGILLRKNFPQYYKYFSIRKFR----------YRNRIITNHNKLL-NKMHNIDGIKTG 243
                 L K     Y+Y  IR++            R     + N LL +   NI   KTG
Sbjct: 235 ------LAKMVEAAYQYPLIRQYSTDLKYDVDTGLRTLYYHSTNVLLRDSAWNIGVQKTG 288

Query: 244 YTRNSGFNIV 253
           Y + SG  +V
Sbjct: 289 YIKESGICLV 298


>gi|239943733|ref|ZP_04695670.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           roseosporus NRRL 15998]
          Length = 436

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 112/267 (41%), Gaps = 26/267 (9%)

Query: 30  LMGKILFLSIIMISMASELHAKPKY----SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMM 84
           L G+ L +S   +++   +   PK     S IV D     +        R P AS  KM+
Sbjct: 31  LGGERLSMSGSQVNLGPGVPVLPKGLTARSWIVADAENGDVLAAHNSHWRLPPASTMKML 90

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-LKEKTYFTTEQGILALITRSANDV 143
               +   LQ  + H  T+   S+ A     S L  +KE   +T     L +  RS ND 
Sbjct: 91  FADTVLPALQPTQTHKVTE---SELAGVGEGSSLVGIKEDHTYTVHDLWLGVFLRSGNDA 147

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG--ILL 201
                    G  +  A  M   A+++   +T+  +  G     Q+++A D  ++    + 
Sbjct: 148 VHVLASMYGGMPQTVAA-MQKHAEELQALDTVVVSPDGYDAPRQVSSAYDLTLIARSGMQ 206

Query: 202 RKNFPQYYKYFSI------RKFRYRNRI-ITNHNKLLNKMHNID------GIKTGYTRNS 248
           +K+F +Y    S       +K + R+   I N N+L+     +D      G+K GYT ++
Sbjct: 207 KKDFREYAATASADFPGEKKKGKKRDSFEIQNTNRLITGDIGVDPYKGIAGVKNGYTTHA 266

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           G N  T +  ++  ++ V +  P+++E
Sbjct: 267 G-NTFTGVAERNGKVLLVTVMNPSAEE 292


>gi|126456044|ref|YP_001074647.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106a]
 gi|242313626|ref|ZP_04812643.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106b]
 gi|126229812|gb|ABN93225.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106a]
 gi|242136865|gb|EES23268.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106b]
          Length = 350

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           AS+TK+MT  ++ +        L+ +I V+     Q+    S+L +   +  + +  +  
Sbjct: 124 ASVTKLMTAMVVLD----SNAPLDERIEVTDDDRDQDKFTGSRLAIG--SALSRDDMLHI 177

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A   +  G  + F   M+ KA+ +GM +T ++N +GL  K+ +++ARD 
Sbjct: 178 ALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVDTYFENPTGL-SKHNVSSARD- 235

Query: 195 AILGILLRKNFPQYYKYFSIRKFR----------YRNRIITNHNKLL-NKMHNIDGIKTG 243
                 L K     Y+Y  IR++            R     + N LL +   NI   KTG
Sbjct: 236 ------LAKMVEAAYQYPLIRQYSTDLKYDVDTGLRTLYYHSTNVLLRDSAWNIGVQKTG 289

Query: 244 YTRNSGFNIV 253
           Y + SG  +V
Sbjct: 290 YIKESGICLV 299


>gi|169630760|ref|YP_001704409.1| penicillin-binding protein DacB1 [Mycobacterium abscessus ATCC
           19977]
 gi|169242727|emb|CAM63755.1| Probable penicillin-binding protein DacB1 [Mycobacterium abscessus]
          Length = 429

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 92/210 (43%), Gaps = 25/210 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S ++ D+N   +   K    R+ PAS+ K++   +  E + +  L+LN  +  ++  A  
Sbjct: 116 SWLIADLNTGNVVAAKDPHARHRPASVIKVL---VAMEAINN--LNLNQAVVGTQEDANS 170

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +++ +     +T  Q +  L+  S ND + A    + G ++  A + ++ A+K+G ++
Sbjct: 171 EGTRVGVDVGGTYTVRQLLTGLLMNSGNDAAHALAVQLGGMDETVAKI-NDMAQKLGARD 229

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYRNRI-------- 223
           T     SGL      T+A D   LG+  +  F  P +    S  K  +            
Sbjct: 230 TRAATPSGLDGPGMSTSAYD---LGLFYKYAFADPTFADLVSAPKATFPGHPAKPGERDD 286

Query: 224 -----ITNHNKLLNKMHNIDGIKTGYTRNS 248
                +TN NKLL       G KTGYT ++
Sbjct: 287 HPAYEMTNDNKLLYNYPGALGGKTGYTDDA 316


>gi|330467947|ref|YP_004405690.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Verrucosispora
           maris AB-18-032]
 gi|328810918|gb|AEB45090.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Verrucosispora
           maris AB-18-032]
          Length = 420

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 27/208 (12%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S +V D++  + + G    E   PAS+ K++    +   L   ++       V+ TA   
Sbjct: 92  SWVVADLDTGEVLGGCGPHEYATPASVQKLLLAATMLPRLDPAEV-------VTITAGDL 144

Query: 113 ---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL--MSNKAK 167
                 S + L     +  E   L L+ RS N+V+ A      G++     L  M+ +A+
Sbjct: 145 DIEPGSSAVGLVAGGRYRIETLWLGLLLRSGNEVANALARLGGGADGMAGGLRAMNEQAR 204

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIR--------KF 217
           ++G   T     SGL    Q T+A D   L ++ R  F    + +Y + R        K 
Sbjct: 205 QLGAYQTHAATPSGLDGPGQFTSAYD---LALIARACFDDEHFRRYVATREADIPAQPKQ 261

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYT 245
           R +   I N N+LL +     G KTGYT
Sbjct: 262 RAKGFTIDNDNQLLYRYPGALGGKTGYT 289


>gi|302520562|ref|ZP_07272904.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB78]
 gi|302429457|gb|EFL01273.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB78]
          Length = 308

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 108/262 (41%), Gaps = 33/262 (12%)

Query: 32  GKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIF 90
           G +L   ++  + A+   +     + ++D +  +    K  D  R  AS TK+MT  ++ 
Sbjct: 18  GAVLVAPLVGTAQAASAPSVSAKGAFLLDTSSGKTLYSKAADTKRQMASTTKVMTATVV- 76

Query: 91  EYLQSKKLHLNTQIP---------VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
             L +K L+L+ +I          V K A+T +     L+     T  Q + A +  S  
Sbjct: 77  --LDTKGLNLDKKITIKQAYRDYVVKKGASTSD-----LRTGDKVTVRQLLYATLLPSGC 129

Query: 142 DVSTAF------GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ-ITTARDQ 194
           D + A       G+  S     F   M+ KAK + M+NT Y +  G+  K++  TT RD 
Sbjct: 130 DAAYALADTFGTGKTASARTANFISKMNAKAKSLKMKNTSYDSFDGIPTKSKNYTTPRDA 189

Query: 195 AILG--ILLRKNFPQYYKYFSIRK------FRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           ++L    L    F    K  S ++       + R     N NKLL       GIKTG   
Sbjct: 190 SLLARHALKSSTFRTVVKSKSTKQKATASNGKSRTYTWYNTNKLLGSYKGAIGIKTGTAS 249

Query: 247 NSGFNIVTSLRYKDDPIVAVVM 268
            SG  +V +       +  V++
Sbjct: 250 GSGPCLVFAATRNGKTVAGVIL 271


>gi|226323178|ref|ZP_03798696.1| hypothetical protein COPCOM_00950 [Coprococcus comes ATCC 27758]
 gi|225208368|gb|EEG90722.1| hypothetical protein COPCOM_00950 [Coprococcus comes ATCC 27758]
          Length = 288

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 17/153 (11%)

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-----QITTAR 192
            S ND + A  E ++GS  +FA  M+ KA++IG     +   +GL +++      I+ A 
Sbjct: 3   ESHNDSAVAIAEHLAGSVPQFAGWMNEKAEEIGCTEAHFVTPNGLDEEDVGGVHSISAAD 62

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRY---------RNRIITNHNKLLNKMHNIDGIKTG 243
              I+   + ++ P+  ++ +I +             N   +NHN  L  M      KTG
Sbjct: 63  LAKIMSYCVLRS-PKAAEFLAITQMPAYSFSDAEGKGNFSCSNHNAFLQMMDGAISGKTG 121

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVM--GMPTSQ 274
           +T ++G+  V +L+ +    V  ++  G P ++
Sbjct: 122 FTGDAGYCYVGALQSEGRTFVVALLACGWPNNK 154


>gi|318062549|ref|ZP_07981270.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SA3_actG]
 gi|318081336|ref|ZP_07988668.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SA3_actF]
          Length = 308

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 108/262 (41%), Gaps = 33/262 (12%)

Query: 32  GKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIF 90
           G +L   ++  + A+   +     + ++D +  +    K  D  R  AS TK+MT  ++ 
Sbjct: 18  GAVLVAPLVGTAQAASAPSVSAKGAFLLDTSSGKTLYSKAADTKRQMASTTKVMTATVV- 76

Query: 91  EYLQSKKLHLNTQIP---------VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
             L +K L+L+ +I          V K A+T +     L+     T  Q + A +  S  
Sbjct: 77  --LDTKGLNLDKKITIKQAYRDYVVKKGASTSD-----LRTGDKVTVRQLLYATLLPSGC 129

Query: 142 DVSTAF------GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ-ITTARDQ 194
           D + A       G+  S     F   M+ KAK + M+NT Y +  G+  K++  TT RD 
Sbjct: 130 DAAYALADTFGTGKTASARTANFISKMNAKAKSLKMKNTSYDSFDGIPTKSKNYTTPRDA 189

Query: 195 AILG--ILLRKNFPQYYKYFSIRK------FRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           ++L    L    F    K  S ++       + R     N NKLL       GIKTG   
Sbjct: 190 SLLARHALKSSTFRTVVKSKSTKQKATASNGKSRTYTWYNTNKLLGSYKGAIGIKTGTAS 249

Query: 247 NSGFNIVTSLRYKDDPIVAVVM 268
            SG  +V +       +  V++
Sbjct: 250 GSGPCLVFAATRNGKTVAGVIL 271


>gi|254185373|ref|ZP_04891961.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1655]
 gi|254187257|ref|ZP_04893771.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|157934939|gb|EDO90609.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|184209608|gb|EDU06651.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1655]
          Length = 350

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           AS+TK+MT  ++ +        L+ +I V+     Q+    S+L +   +  + +  +  
Sbjct: 124 ASVTKLMTAMVVLD----SNAPLDERIEVTDDDRDQDKFTGSRLAIG--SALSRDDMLHI 177

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A   +  G  + F   M+ KA+ +GM +T ++N +GL  K+ +++ARD 
Sbjct: 178 ALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVDTYFENPTGL-SKHNVSSARD- 235

Query: 195 AILGILLRKNFPQYYKYFSIRKFR----------YRNRIITNHNKLL-NKMHNIDGIKTG 243
                 L K     Y+Y  IR++            R     + N LL +   NI   KTG
Sbjct: 236 ------LAKMVEAAYQYPLIRQYSTDLKYDVDTGLRTLYYHSTNVLLRDNAWNIGVQKTG 289

Query: 244 YTRNSGFNIV 253
           Y + SG  +V
Sbjct: 290 YIKESGICLV 299


>gi|229550853|ref|ZP_04439578.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus rhamnosus
           LMS2-1]
 gi|258538436|ref|YP_003172935.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus Lc
           705]
 gi|229315803|gb|EEN81776.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus rhamnosus
           LMS2-1]
 gi|257150112|emb|CAR89084.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus Lc
           705]
          Length = 436

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 104/221 (47%), Gaps = 31/221 (14%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGIL 133
           AS+TKM+++ ++ + ++S K+  + ++ + ++  T    ++ S + L+    ++  +   
Sbjct: 66  ASMTKMISIELVLDAIKSGKIKWDDKVTLDQSIWTISQDRDLSNVPLRRDGSYSVRELYD 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD--------- 184
           A +  SAN       + ++GS++KF   M  K K  G+ +    N +GL++         
Sbjct: 126 ASLIYSANAAMMLLAKAVAGSQEKFVNQMDAKLKSWGITDAKIVNVTGLNNSQLKDAKVP 185

Query: 185 ------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL-- 231
                 +N++ +A+D A +   L K+ P+  K  SI K  +R        + N + +L  
Sbjct: 186 GTGDNAENEM-SAKDMAQVAQHLIKDHPEVLKTTSIAKQTFRKGTDDAINMENWDWMLKG 244

Query: 232 ----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
               +K   +DG+KTG +  +G     ++      I+ VV+
Sbjct: 245 LVSYDKNLPVDGLKTGTSDAAGDCFTGTVEKNGMRIITVVL 285


>gi|265999457|ref|ZP_06111698.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
           str. 63/9]
 gi|263094079|gb|EEZ18001.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
           str. 63/9]
 gi|326409094|gb|ADZ66159.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella
           melitensis M28]
 gi|326538798|gb|ADZ87013.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis M5-90]
          Length = 188

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 35/52 (67%)

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
            +DGIKTGYT  SG+N+V+S    +  +V VV+G  ++ +RD +  +L+T F
Sbjct: 6   GVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQMAKLLTRF 57


>gi|269836472|ref|YP_003318700.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785735|gb|ACZ37878.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 550

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 15/201 (7%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+ T  +  E        L+  I +++       S + L      T    +  ++
Sbjct: 67  PASLTKIFTAAVALE-----TAPLDQLITIAEDDLVGE-SAMGLVVGQDVTLRTLLYGMM 120

Query: 137 TRSANDVSTAFG----EFISGSEKK----FAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
             S ND + A      E   GS  +    F   +++ A+++G+ +T   N  GL +   +
Sbjct: 121 LPSGNDAAMAIARGLSELSDGSSGESIAPFMERVNDLAQRLGLTHTRLVNPHGLDEPGHV 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
           ++ARD A + +    N P++ +      +      + N+N+LL     + G KTG T  +
Sbjct: 181 SSARDIAAITMYALGN-PEFRRIIGSPYYVDEGFELYNNNELLTSYTGLIGGKTGITDEA 239

Query: 249 GFNIVTSLRYKDDPIVAVVMG 269
           G+ +V   +     I+AVV+G
Sbjct: 240 GYCLVEVAQRDGHTIIAVVLG 260


>gi|227505356|ref|ZP_03935405.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium striatum ATCC
           6940]
 gi|227198058|gb|EEI78106.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium striatum ATCC
           6940]
          Length = 419

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 98/223 (43%), Gaps = 22/223 (9%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++  ++   K    RY PAS+ K +   ++ +     ++ L+ ++  +   A+   
Sbjct: 110 MVSDIDTGEIIAMKDPNGRYRPASIIKALLALVVID-----EVPLDKKVKATMKDASIEG 164

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE---KKFAILMSNKAKKIGMQ 172
           S + +     +T EQ +  L+  S ND + A    + G E   KK   L    AKK+G +
Sbjct: 165 SAVGIGPDGEYTVEQLLQGLLMASGNDAAHALAGQLGGDEEASKKVNAL----AKKLGTR 220

Query: 173 NTIYKNASGLHDKNQITTARDQAIL--GILLRKNFPQYYKYFSIRKFRYRNRI----ITN 226
           +T   + SGL      T+A D +I+       K F +      + +F     +    + N
Sbjct: 221 STRAASYSGLDSAGMSTSAEDISIIYRAAFRNKTFARIVDTEHV-EFPGWGELPGYELWN 279

Query: 227 HNKL-LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            N L LN    I G KTGYT ++    V +L      + AV++
Sbjct: 280 DNGLFLNDPDGIGG-KTGYTEDAHHTFVGALDRGGRRLQAVIL 321


>gi|254296746|ref|ZP_04964200.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 406e]
 gi|157806643|gb|EDO83813.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 406e]
          Length = 350

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           AS+TK+MT  ++ +        L+ +I V+     Q+    S+L +   +  + +  +  
Sbjct: 124 ASVTKLMTAMVVLD----SNAPLDERIEVTDDDRDQDKFTGSRLAIG--SALSRDDMLHI 177

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A   +  G  + F   M+ KA+ +GM +T ++N +GL  K+ +++ARD 
Sbjct: 178 ALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVDTYFENPTGL-SKHNVSSARD- 235

Query: 195 AILGILLRKNFPQYYKYFSIRKFR----------YRNRIITNHNKLL-NKMHNIDGIKTG 243
                 L K     Y+Y  IR++            R     + N LL +   NI   KTG
Sbjct: 236 ------LAKMVEAAYQYPLIRQYSTDLKYDVDTGLRTLYYHSTNVLLRDNAWNIGVQKTG 289

Query: 244 YTRNSGFNIV 253
           Y + SG  +V
Sbjct: 290 YIKESGICLV 299


>gi|126445342|ref|YP_001061703.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 668]
 gi|126224833|gb|ABN88338.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           668]
          Length = 350

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           AS+TK+MT  ++ +        L+ +I V+     Q+    S+L +   +  + +  +  
Sbjct: 124 ASVTKLMTAMVVLD----SNAPLDERIEVTDDDRDQDKFTGSRLAIG--SALSRDDMLHI 177

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A   +  G  + F   M+ KA+ +GM +T ++N +GL  K+ +++ARD 
Sbjct: 178 ALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVDTYFENPTGL-SKHNVSSARD- 235

Query: 195 AILGILLRKNFPQYYKYFSIRKFR----------YRNRIITNHNKLL-NKMHNIDGIKTG 243
                 L K     Y+Y  IR++            R     + N LL +   NI   KTG
Sbjct: 236 ------LAKMVEAAYQYPLIRQYSTDLKYDVDTGLRTLYYHSTNVLLRDNAWNIGVQKTG 289

Query: 244 YTRNSGFNIV 253
           Y + SG  +V
Sbjct: 290 YIKESGICLV 299


>gi|55821084|ref|YP_139526.1| D-alanyl-D-alanine-carboxypeptidase, penicillin-binding protein,
           truncated [Streptococcus thermophilus LMG 18311]
 gi|55737069|gb|AAV60711.1| D-alanyl-D-alanine-carboxypeptidase, penicillin-binding protein,
           truncated [Streptococcus thermophilus LMG 18311]
          Length = 313

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 33/177 (18%)

Query: 139 SANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGL-------------HD 184
           S+N  +     +++ ++  K+  +M+ K+K++ M NT + NASG              +D
Sbjct: 6   SSNVTTVMLANYLTNNDPDKWLDMMNEKSKELSMTNTKWFNASGAAAVAFKGYYSPQRYD 65

Query: 185 KNQI--TTARDQAILGILLRKNFPQYYKYFS------------IRKFRYRNRIITNHNKL 230
            NQ   TTARD  I+     K +P   KY S               F   N  I   N  
Sbjct: 66  NNQSNQTTARDLVIMTYNFIKKYPDILKYTSKPVVAVKEGTPYEETFETYNYSIPGANYG 125

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           L     +DG KTG +    FN + ++++ +  ++A++MG  +    DQ   E+  +F
Sbjct: 126 L---KGVDGSKTGSSPEVAFNYIDTIKHGNQRMIAIIMG--SGDWSDQTGEEIRHTF 177


>gi|53721488|ref|YP_110473.1| peptidase [Burkholderia pseudomallei K96243]
 gi|76819779|ref|YP_337155.1| peptidase [Burkholderia pseudomallei 1710b]
 gi|52211902|emb|CAH37907.1| family S11 unassigned peptidase [Burkholderia pseudomallei K96243]
 gi|76584252|gb|ABA53726.1| family S11 unassigned peptidase [Burkholderia pseudomallei 1710b]
          Length = 362

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           AS+TK+MT  ++ +        L+ +I V+     Q+    S+L +   +  + +  +  
Sbjct: 136 ASVTKLMTAMVVLD----SNAPLDERIEVTDDDRDQDKFTGSRLAIG--SALSRDDMLHI 189

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A   +  G  + F   M+ KA+ +GM +T ++N +GL  K+ +++ARD 
Sbjct: 190 ALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVDTYFENPTGL-SKHNVSSARD- 247

Query: 195 AILGILLRKNFPQYYKYFSIRKFR----------YRNRIITNHNKLL-NKMHNIDGIKTG 243
                 L K     Y+Y  IR++            R     + N LL +   NI   KTG
Sbjct: 248 ------LAKMVEAAYQYPLIRQYSTDLKYDVDTGLRTLYYHSTNVLLRDNAWNIGVQKTG 301

Query: 244 YTRNSGFNIV 253
           Y + SG  +V
Sbjct: 302 YIKESGICLV 311


>gi|167921747|ref|ZP_02508838.1| family S11 unassigned peptidase [Burkholderia pseudomallei BCC215]
          Length = 350

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           AS+TK+MT  ++ +        L+ +I V+     Q+    S+L +   +  + +  +  
Sbjct: 124 ASVTKLMTAMVVLD----SNAPLDERIEVTDDDRDQDKFTGSRLAIG--SALSRDDMLHI 177

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A   +  G  + F   M+ KA+ +GM +T ++N +GL  K+ +++ARD 
Sbjct: 178 ALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVDTYFENPTGL-SKHNVSSARD- 235

Query: 195 AILGILLRKNFPQYYKYFSIRKFR----------YRNRIITNHNKLL-NKMHNIDGIKTG 243
                 L K     Y+Y  IR++            R     + N LL +   NI   KTG
Sbjct: 236 ------LAKMVEAAYQYPLIRQYSTDLKYDVDTGLRTLYYHSTNVLLRDNAWNIGVQKTG 289

Query: 244 YTRNSGFNIV 253
           Y + SG  +V
Sbjct: 290 YIKESGICLV 299


>gi|123443099|ref|YP_001007073.1| D-alanyl-D-alanine endopeptidase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090060|emb|CAL12923.1| penicillin-binding protein 7 precursor [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 311

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 101/225 (44%), Gaps = 19/225 (8%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N++      DE    AS+TK+MT  ++ +     KL L+  I V     T+
Sbjct: 46  SAMVVDLQTNKVIYANNADEVVPIASITKLMTAMVVLD----AKLPLDEIISVD-IHQTK 100

Query: 114 NPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               ++  ++  +  + +  +L  +  S N  + +      G    F   M+ KAK +GM
Sbjct: 101 EMKGVFSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNAKAKSLGM 160

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS----IRKFRYRNRII--- 224
             T Y   +GL   N ++TARD   L ++  K +P   +  +    +  FR  N  +   
Sbjct: 161 TKTRYVEPTGL-SINNVSTARDLTKL-LIATKQYPLIGQLSTTTEKMATFREPNYTLPFR 218

Query: 225 -TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            TNH  + N   NI   KTG+T  +G  +       + P+  VV+
Sbjct: 219 NTNH-LVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPVALVVL 262


>gi|167618346|ref|ZP_02386977.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis Bt4]
          Length = 355

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 109/243 (44%), Gaps = 48/243 (19%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +  +++I+ N N +           AS+TK+MT  +           L+T+ P+S+    
Sbjct: 124 RTGTVLIERNANCVVPI--------ASVTKLMTSMVA----------LDTRAPMSR---- 161

Query: 113 QNPSKLYLKEKTY--FTTEQ----GIL--------ALITRSANDVSTAFGEFISGSEKKF 158
             P ++  +++ Y  FT  +     +L        AL++ S N  + A      G    F
Sbjct: 162 --PLRVSAQDRDYEKFTGSRLKVGSVLPRRDMLHIALMS-SENRAAAALSRDYPGGRPAF 218

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-- 216
              M+ KA+ +GM++T + NA+GL  +N ++TARD + L +     +P + K FS     
Sbjct: 219 VAAMNRKARTLGMKHTHFVNATGLSPRN-VSTARDLSRL-VAAASRYP-HIKSFSTDTSK 275

Query: 217 --FRYRNRIITNHNKLLNKMHNIDGI--KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
             F  R ++   ++  L +  +   +  KTG+   +G  +V     +  P+  V++G P 
Sbjct: 276 TVFPGRGQLHYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVRGRPVDIVLLGAPG 335

Query: 273 SQE 275
             +
Sbjct: 336 PHD 338


>gi|118471047|ref|YP_886038.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str.
           MC2 155]
 gi|118172334|gb|ABK73230.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str.
           MC2 155]
          Length = 397

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 94/218 (43%), Gaps = 13/218 (5%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           IV D++   +   +    R+ PAS+ K++T           +L+LN ++  ++  A    
Sbjct: 95  IVADMDTGDVIAARDPHGRHRPASIIKVLTATAAL-----NELNLNKRVAGTQDDANAEG 149

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           +++ +     +T    +  L+  S ND + A    + G +     L +  A K+G ++T 
Sbjct: 150 TRVGVGPGGQYTINDLLHGLLMYSGNDAAHALAMQLGGWDPALQKL-NTLAAKLGGRDTR 208

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----IITNHNKL 230
               SGL      T+A D A+      +N P +      + +++  R      I N NKL
Sbjct: 209 AATPSGLDGPGMSTSAYDIALFYRYAWQN-PVFADIVHTQSYQFPGRDGGSYPIENDNKL 267

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           L       G KTGYT ++G   V +       ++AV++
Sbjct: 268 LANYPGALGGKTGYTDDAGQTFVGAAERDGRRLIAVLL 305


>gi|167725751|ref|ZP_02408987.1| family S11 unassigned peptidase [Burkholderia pseudomallei DM98]
          Length = 281

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 16/184 (8%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           AS+TK+MT  ++ +        L+ +I V+     Q+    S+L +   +  + +  +  
Sbjct: 55  ASVTKLMTAMVVLD----SNAPLDERIEVTDDDRDQDKFTGSRLAIG--SALSRDDMLHI 108

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A   +  G  + F   M+ KA+ +GM +T ++N +GL  K+ +++ARD 
Sbjct: 109 ALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVDTYFENPTGLS-KHNVSSARDL 167

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL-NKMHNIDGIKTGYTRNSG 249
           A + +     +P   +Y +  K+     + T    + N LL +   NI   KTGY + SG
Sbjct: 168 AKM-VEAAYQYPLIRQYSTDLKYDVDTGLRTLYYHSTNVLLRDNAWNIGVQKTGYIKESG 226

Query: 250 FNIV 253
             +V
Sbjct: 227 ICLV 230


>gi|134283054|ref|ZP_01769756.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 305]
 gi|226196446|ref|ZP_03792027.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|254198846|ref|ZP_04905264.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei S13]
 gi|254263948|ref|ZP_04954813.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1710a]
 gi|134245702|gb|EBA45794.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 305]
 gi|169657018|gb|EDS88412.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei S13]
 gi|225931322|gb|EEH27328.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|254214950|gb|EET04335.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1710a]
          Length = 373

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           AS+TK+MT  ++ +        L+ +I V+     Q+    S+L +   +  + +  +  
Sbjct: 147 ASVTKLMTAMVVLD----SNAPLDERIEVTDDDRDQDKFTGSRLAIG--SALSRDDMLHI 200

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A   +  G  + F   M+ KA+ +GM +T ++N +GL  K+ +++ARD 
Sbjct: 201 ALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVDTYFENPTGL-SKHNVSSARD- 258

Query: 195 AILGILLRKNFPQYYKYFSIRKFR----------YRNRIITNHNKLL-NKMHNIDGIKTG 243
                 L K     Y+Y  IR++            R     + N LL +   NI   KTG
Sbjct: 259 ------LAKMVEAAYQYPLIRQYSTDLKYDVDTGLRTLYYHSTNVLLRDNAWNIGVQKTG 312

Query: 244 YTRNSGFNIV 253
           Y + SG  +V
Sbjct: 313 YIKESGICLV 322


>gi|167741512|ref|ZP_02414286.1| family S11 unassigned peptidase [Burkholderia pseudomallei 14]
 gi|167818703|ref|ZP_02450383.1| family S11 unassigned peptidase [Burkholderia pseudomallei 91]
          Length = 349

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           AS+TK+MT  ++ +        L+ +I V+     Q+    S+L +   +  + +  +  
Sbjct: 123 ASVTKLMTAMVVLD----SNAPLDERIEVTDDDRDQDKFTGSRLAIG--SALSRDDMLHI 176

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A   +  G  + F   M+ KA+ +GM +T ++N +GL  K+ +++ARD 
Sbjct: 177 ALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVDTYFENPTGL-SKHNVSSARD- 234

Query: 195 AILGILLRKNFPQYYKYFSIRKFR----------YRNRIITNHNKLL-NKMHNIDGIKTG 243
                 L K     Y+Y  IR++            R     + N LL +   NI   KTG
Sbjct: 235 ------LAKMVEAAYQYPLIRQYSTDLKYDVDTGLRTLYYHSTNVLLRDNAWNIGVQKTG 288

Query: 244 YTRNSGFNIV 253
           Y + SG  +V
Sbjct: 289 YIKESGICLV 298


>gi|217424602|ref|ZP_03456100.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           576]
 gi|237508406|ref|ZP_04521121.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei MSHR346]
 gi|217392526|gb|EEC32550.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           576]
 gi|235000611|gb|EEP50035.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei MSHR346]
          Length = 373

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           AS+TK+MT  ++ +        L+ +I V+     Q+    S+L +   +  + +  +  
Sbjct: 147 ASVTKLMTAMVVLD----SNAPLDERIEVTDDDRDQDKFTGSRLAIG--SALSRDDMLHI 200

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A   +  G  + F   M+ KA+ +GM +T ++N +GL  K+ +++ARD 
Sbjct: 201 ALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVDTYFENPTGL-SKHNVSSARD- 258

Query: 195 AILGILLRKNFPQYYKYFSIRKFR----------YRNRIITNHNKLL-NKMHNIDGIKTG 243
                 L K     Y+Y  IR++            R     + N LL +   NI   KTG
Sbjct: 259 ------LAKMVEAAYQYPLIRQYSTDLKYDVDTGLRTLYYHSTNVLLRDNAWNIGVQKTG 312

Query: 244 YTRNSGFNIV 253
           Y + SG  +V
Sbjct: 313 YIKESGICLV 322


>gi|167905525|ref|ZP_02492730.1| family S11 unassigned peptidase [Burkholderia pseudomallei NCTC
           13177]
          Length = 365

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           AS+TK+MT  ++ +        L+ +I V+     Q+    S+L +   +  + +  +  
Sbjct: 139 ASVTKLMTAMVVLD----SNAPLDERIEVTDDDRDQDKFTGSRLAIG--SALSRDDMLHI 192

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A   +  G  + F   M+ KA+ +GM +T ++N +GL  K+ +++ARD 
Sbjct: 193 ALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVDTYFENPTGL-SKHNVSSARD- 250

Query: 195 AILGILLRKNFPQYYKYFSIRKFR----------YRNRIITNHNKLL-NKMHNIDGIKTG 243
                 L K     Y+Y  IR++            R     + N LL +   NI   KTG
Sbjct: 251 ------LAKMVEAAYQYPLIRQYSTDLKYDVDTGLRTLYYHSTNVLLRDNAWNIGVQKTG 304

Query: 244 YTRNSGFNIV 253
           Y + SG  +V
Sbjct: 305 YIKESGICLV 314


>gi|167827077|ref|ZP_02458548.1| family S11 unassigned peptidase [Burkholderia pseudomallei 9]
 gi|167897149|ref|ZP_02484551.1| family S11 unassigned peptidase [Burkholderia pseudomallei 7894]
          Length = 349

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           AS+TK+MT  ++ +        L+ +I V+     Q+    S+L +   +  + +  +  
Sbjct: 123 ASVTKLMTAMVVLD----SNAPLDERIEVTDDDRDQDKFTGSRLAIG--SALSRDDMLHI 176

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A   +  G  + F   M+ KA+ +GM +T ++N +GL  K+ +++ARD 
Sbjct: 177 ALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVDTYFENPTGL-SKHNVSSARD- 234

Query: 195 AILGILLRKNFPQYYKYFSIRKFR----------YRNRIITNHNKLL-NKMHNIDGIKTG 243
                 L K     Y+Y  IR++            R     + N LL +   NI   KTG
Sbjct: 235 ------LAKMVEAAYQYPLIRQYSTDLKYDVDTGLRTLYYHSTNVLLRDNAWNIGVQKTG 288

Query: 244 YTRNSGFNIV 253
           Y + SG  +V
Sbjct: 289 YIKESGICLV 298


>gi|310767083|gb|ADP12033.1| penicillin-binding protein 7 [Erwinia sp. Ejp617]
          Length = 316

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 103/232 (44%), Gaps = 33/232 (14%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS---KTA 110
           S++++D+N N++      D  R  AS+TK+MT+ +           L+  +P+    K  
Sbjct: 46  SAMIVDLNSNKVIYESHPDRVRPIASITKLMTVMVT----------LDAHLPLDEMLKVD 95

Query: 111 ATQNPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
            +  P    +  +    +E       +LAL++ S N  + +      G    F   M+ K
Sbjct: 96  ISHTPQMRGIYSRVRLNSELSRKNMMLLALMS-SENRAAASLAHHYPGGYDAFIRAMNAK 154

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR--KNFPQYYK----YFSIRKFRY 219
           A+ +GM +T Y   +GL   N ++TARD   L  LL+  K +P   +    +  +  FR 
Sbjct: 155 ARALGMSHTRYVEPTGLSIDN-VSTARD---LSKLLQATKRYPLIGQLSTTHEDMASFRS 210

Query: 220 RNRIIT--NHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            N  +   N N L+ +   NI   KTG+T  +G  +V        P+  VV+
Sbjct: 211 PNYTLPFRNTNHLVYRPDWNIQLTKTGFTNEAGHCLVMRTVINQRPVSLVVL 262


>gi|319762474|ref|YP_004126411.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Alicycliphilus
           denitrificans BC]
 gi|330825675|ref|YP_004388978.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Alicycliphilus
           denitrificans K601]
 gi|317117035|gb|ADU99523.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Alicycliphilus
           denitrificans BC]
 gi|329311047|gb|AEB85462.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Alicycliphilus
           denitrificans K601]
          Length = 364

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 23/210 (10%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQ 113
           ++VID +  ++   K D    P ASLTK+MT  +I E     +L ++  I +++    T+
Sbjct: 112 ALVIDQDTKEVLLSKNDHAVLPIASLTKLMTGLLISE----ARLPMDEPITITQDDVDTE 167

Query: 114 NPSKLYLKEKTYFTTEQGI-LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
             S   L   T  +  + + LAL++ S N  + A G    G    F   M+ KA+ +GM 
Sbjct: 168 KGSGSRLTVGTTLSRGELLHLALMS-SENRAAHALGRTYPGGLAVFVQRMNAKARLLGMT 226

Query: 173 NTIYKNASGLHDKNQITTARDQAIL------GILLRK--NFPQYYKYFSIRKFRYRNRII 224
            T Y   +GL  KNQ ++A D A L        LLR+    P +      R  +Y N   
Sbjct: 227 ETRYVEPTGLSSKNQ-SSAHDLATLVNVAHGDPLLRELSTSPSHEVAVGQRVLQYNNT-- 283

Query: 225 TNHNKLL-NKMHNIDGIKTGYTRNSGFNIV 253
              N+L+ +   +I   KTGY   +G  +V
Sbjct: 284 ---NRLVKSPSWDIGLQKTGYISEAGRCLV 310


>gi|83719868|ref|YP_441464.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis E264]
 gi|257139857|ref|ZP_05588119.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis E264]
 gi|83653693|gb|ABC37756.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis E264]
          Length = 383

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 112/251 (44%), Gaps = 48/251 (19%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +  +++I+ N N +           AS+TK+MT  +           L+T+ P+S+    
Sbjct: 152 RTGTVLIERNANCVVPI--------ASVTKLMTSMVA----------LDTRAPMSR---- 189

Query: 113 QNPSKLYLKEKTY--FTTEQ----GIL--------ALITRSANDVSTAFGEFISGSEKKF 158
             P ++  +++ Y  FT  +     +L        AL++ S N  + A      G    F
Sbjct: 190 --PLRVSAQDRDYEKFTGSRLKVGSVLPRRDMLHIALMS-SENRAAAALSRDYPGGRPAF 246

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-- 216
              M+ KA+ +GM++T + NA+GL  +N ++TARD + L +     +P + K FS     
Sbjct: 247 VAAMNRKARTLGMKHTHFVNATGLSPRN-VSTARDLSRL-VAAASRYP-HIKSFSTDTSK 303

Query: 217 --FRYRNRIITNHNKLLNKMHNIDGI--KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
             F  R ++   ++  L +  +   +  KTG+   +G  +V     +  P+  V++G P 
Sbjct: 304 TVFPGRGQLHYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVRGRPVDIVLLGAPG 363

Query: 273 SQERDQKALEL 283
             +    A ++
Sbjct: 364 PHDHVADAAKI 374


>gi|308186137|ref|YP_003930268.1| penicillin-binding protein 7 [Pantoea vagans C9-1]
 gi|308056647|gb|ADO08819.1| penicillin-binding protein 7 [Pantoea vagans C9-1]
          Length = 315

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 102/231 (44%), Gaps = 31/231 (13%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+  N++      D  R  AS+TK+MT  ++ +      L +N  I V     +Q
Sbjct: 46  SAMIVDLTTNKVLFSSHPDRVRPIASITKLMTAMVVLD----AHLPMNEMINVD---ISQ 98

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    ++       +LAL++ S N  + +      G  + F   M+ KA+ 
Sbjct: 99  TPEMRGVFSRVKLNSQISRRNMMLLALMS-SENRAAASLAHAYPGGYRAFIQAMNAKARS 157

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-----------F 217
           +GM+ T Y   +GL  +N +++A+D   L +   + +P      + ++            
Sbjct: 158 LGMKQTRYVEPTGLSTQN-VSSAQDLVKL-LKATREYPMLGALSTTKEETAVFAHPSYAL 215

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            +RN   TNH    N  H I   KTGYT  +G  +V      + P+  VV+
Sbjct: 216 PFRN---TNHLVYKNDWH-IQLTKTGYTDEAGHCLVMRTMINNRPVALVVL 262


>gi|126348215|emb|CAJ89936.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           ambofaciens ATCC 23877]
          Length = 368

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 12/129 (9%)

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           ++G     A  M  +A+ +G ++T  ++  G     Q+++A D A+ G    +N P + +
Sbjct: 146 LTGGWDATAARMQAEARALGARDTHVRSPDGYDAPGQVSSAYDLAVFGRAGLRN-PDFAR 204

Query: 211 YFSIRKFRYRNR-----IITNHNKLLNKMHNID------GIKTGYTRNSGFNIVTSLRYK 259
           Y +     +  R      I N N+LL     ++      GIK GYT N+G  +V + R  
Sbjct: 205 YCAKVDAMFPGRNGDAYGIRNTNRLLTGEDGVEPYPGLIGIKNGYTSNAGNTLVAAARRD 264

Query: 260 DDPIVAVVM 268
              +V  VM
Sbjct: 265 GRTLVVTVM 273


>gi|21323446|dbj|BAB98073.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium glutamicum
           ATCC 13032]
          Length = 379

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 18/221 (8%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++  ++   K    RY PAS+ K++   +  +     +L+  T +  +  AA    
Sbjct: 74  MVFDIDSGEIIAAKDPHGRYRPASIIKVLLSLVAID-----ELNPTTVVTGTMEAANIEG 128

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S++ + E   +T +Q +  L+  S ND +    + + G +     + +  AK++G Q+T 
Sbjct: 129 SRVGVGEGGQYTVDQLLHGLLLASGNDAAYLLAQELGGDQATLEKVNA-LAKELGTQDTF 187

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI------ITNHNK 229
               SGL      T+A D +++     +N P +    S     +          + N N 
Sbjct: 188 VATYSGLDAPGMSTSAYDMSLIYQHAWQN-PVFESIISTDHIDFPGWGDNEGFQVWNDNA 246

Query: 230 LLNKMHNIDGI--KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           L   M++ DGI  KTGYT ++    V  L      + AV++
Sbjct: 247 LF--MNDPDGIGGKTGYTDDANHTFVGGLDRGGRRLAAVLL 285


>gi|328880472|emb|CCA53711.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces venezuelae ATCC
           10712]
          Length = 421

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 15/130 (11%)

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG--ILLRKNFPQY 208
           ++G  +  +  M  KA+ +G  +T   +  G     Q+++A D A+ G   L    F +Y
Sbjct: 176 MNGGWESMSRRMQEKARSLGAMDTHVVSPDGYDAPGQVSSAYDLAVFGRAGLQDPAFTKY 235

Query: 209 ----YKYFSIRKFRYRNRIITNHNKLLNKMHNID------GIKTGYTRNSGFNIVTSLRY 258
               Y  F    + Y    I N N+LL     +       GIK GYT N+G  ++++ R 
Sbjct: 236 CSTAYADFPAGSWSYG---IANTNRLLTGADGVARYPGLIGIKNGYTSNAGNTLISAARR 292

Query: 259 KDDPIVAVVM 268
            D  +V  VM
Sbjct: 293 GDRTLVVSVM 302


>gi|332161016|ref|YP_004297593.1| D-alanyl-D-alanine endopeptidase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665246|gb|ADZ41890.1| D-alanyl-D-alanine endopeptidase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 311

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 101/225 (44%), Gaps = 19/225 (8%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N++      DE    AS+TK+MT  ++ +     KL L+  I V     T+
Sbjct: 46  SAMVVDLQTNKVIYANNADEVVPIASITKLMTAMVVLD----AKLPLDEIISVD-IHQTK 100

Query: 114 NPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               ++  ++  +  + +  +L  +  S N  + +      G    F   M+ KAK +GM
Sbjct: 101 EMKGVFSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFINAMNAKAKSLGM 160

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS----IRKFRYRNRII--- 224
             T Y   +GL   N ++TARD   L ++  K +P   +  +    +  FR  N  +   
Sbjct: 161 TKTRYVEPTGL-SINNVSTARDLTKL-LIATKQYPLIGQLSTTTEKMATFREPNYTLPFR 218

Query: 225 -TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            TNH  + N   NI   KTG+T  +G  +       + P+  VV+
Sbjct: 219 NTNH-LVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPVALVVL 262


>gi|323529337|ref|YP_004231489.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. CCGE1001]
 gi|323386339|gb|ADX58429.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. CCGE1001]
          Length = 414

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 18/154 (11%)

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           +AL++ S N  + A     +G    F   M+ KA+ +GM+ T + N +GL   N ++TAR
Sbjct: 251 IALMS-SENRAAAALSRDYAGGRPGFVAAMNAKARALGMRRTSFVNGTGLSPHN-VSTAR 308

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI-----------K 241
           D A L +     +P    Y + R       +     +     HN + +           K
Sbjct: 309 DLARL-VAAASRYPLIRAYSTDRD----QMVFPGGPRASLSYHNSNALVRGGDRSIVLQK 363

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           TG+   +G  +V  +     PI  VV+G P  ++
Sbjct: 364 TGFINEAGHCVVVRMMVHGRPIDIVVLGAPGPRD 397


>gi|253798001|ref|YP_003031002.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis KZN 1435]
 gi|289553300|ref|ZP_06442510.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis KZN 605]
 gi|297635529|ref|ZP_06953309.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732528|ref|ZP_06961646.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis KZN R506]
 gi|313659860|ref|ZP_07816740.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis KZN V2475]
 gi|253319504|gb|ACT24107.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis KZN 1435]
 gi|289437932|gb|EFD20425.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis KZN 605]
 gi|328457775|gb|AEB03198.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis KZN 4207]
          Length = 291

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 96/239 (40%), Gaps = 28/239 (11%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDE 73
           +T   G+ +   ++Q  G +             +   P  + IV D++  Q + G  Q+ 
Sbjct: 16  VTVSAGAAWADADVQPAGSV------------PIPDGPAQTWIVADLDSGQVLAGRDQNV 63

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-LKEKTYFTTEQGI 132
              PAS  K++   +  +     +L LN+ + V+  A TQ       +K    +T  Q +
Sbjct: 64  AHPPASTIKVLLALVALD-----ELDLNSTV-VADVADTQAECNCVGVKPGRSYTARQLL 117

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ--ITT 190
             L+  S ND +      + G +   A  M+ KA  +G  +T     SGL        +T
Sbjct: 118 DGLLLVSGNDAANTLAHMLGGQDVTVA-KMNAKAATLGATSTHATTPSGLDGPGGSGAST 176

Query: 191 ARDQAIL--GILLRKNFPQYYKYFSIRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYT 245
           A D  ++    +    F Q     S   F   N  ++I N ++LL +     G KTGYT
Sbjct: 177 AHDLVVIFRAAMANPVFAQITAEPS-AMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYT 234


>gi|332528109|ref|ZP_08404140.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rubrivivax
           benzoatilyticus JA2]
 gi|332112680|gb|EGJ12473.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rubrivivax
           benzoatilyticus JA2]
          Length = 353

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 9/145 (6%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLN-TQIPVSKTAATQ 113
           ++V+D   +Q+   K      P AS+TK+MT  ++ E  Q     L  TQ  V     T+
Sbjct: 107 ALVVDQETDQILLSKNSNAVLPIASITKLMTGLLVTEAQQPLDEVLTITQDDVD----TE 162

Query: 114 NPSKLYLKEKTYFTTEQGI-LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
             S   L+  T  T  + + LAL++ S N  + A G    G    F   M+ KAK +GM 
Sbjct: 163 KGSHSRLQVGTQLTRGEMLHLALMS-SENRAANALGRHYPGGLSAFVQAMNAKAKLLGMH 221

Query: 173 NTIYKNASGLHDKNQITTARDQAIL 197
           +T Y   +GL   NQ ++ARD A+L
Sbjct: 222 DTRYVEPTGLSSNNQ-SSARDLAVL 245


>gi|333025663|ref|ZP_08453727.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces sp.
           Tu6071]
 gi|332745515|gb|EGJ75956.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces sp.
           Tu6071]
          Length = 308

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 108/262 (41%), Gaps = 33/262 (12%)

Query: 32  GKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIF 90
           G +L   ++  + A+   +     + ++D +  +    K  D  R  AS TK+MT  ++ 
Sbjct: 18  GAVLVAPLVGTAQAASAPSVSAKGAFLLDTSSGKTLYSKAADTKRQMASTTKVMTATVV- 76

Query: 91  EYLQSKKLHLNTQIP---------VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
             L +K L+L+ ++          V K A+T +     L+     T  Q + A +  S  
Sbjct: 77  --LDTKGLNLDKKVTIKQAYRDYVVKKGASTSD-----LRTGDKVTVRQLLYATLLPSGC 129

Query: 142 DVSTAF------GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ-ITTARDQ 194
           D + A       G+  S     F   M+ KAK + M+NT Y +  G+  K++  TT RD 
Sbjct: 130 DAAYALADTFGTGKTASARTANFISKMNAKAKSLKMKNTSYDSFDGIPTKSKNYTTPRDA 189

Query: 195 AILG--ILLRKNFPQYYKYFSIRK------FRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           ++L    L    F    K  S ++       + R     N NKLL       GIKTG   
Sbjct: 190 SLLARHALKSSTFRTVVKSKSTKQKATASNGKSRTYTWYNTNKLLGSYKGAIGIKTGTAS 249

Query: 247 NSGFNIVTSLRYKDDPIVAVVM 268
            SG  +V +       +  V++
Sbjct: 250 GSGPCLVFAATRNGKTVAGVIL 271


>gi|330979275|gb|EGH78054.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 266

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 22/203 (10%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG----IL 133
           AS+TK+MT  ++ +  Q     ++  IPV+    +Q P    +  +    +E      +L
Sbjct: 23  ASVTKLMTAMVVLDAKQP----MDEVIPVN---ISQTPEMKGVFSRVKLGSEMNRRDMLL 75

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
             +  S N  + +      G    F + M+ KAK +GM++T Y   +GL   N ++TARD
Sbjct: 76  ITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKALGMKHTAYVEPTGLSVYN-VSTARD 134

Query: 194 QAILGILLRKNFP-------QYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYT 245
              L +  RK +P          K  + RK  Y     +N + L+ K + +I   KTG+T
Sbjct: 135 LTKLVMAARK-YPLLSELSTTEQKTVTFRKPTY-TLGFSNTDHLVRKDNWDIKLTKTGFT 192

Query: 246 RNSGFNIVTSLRYKDDPIVAVVM 268
             +G  +V      + P+  V++
Sbjct: 193 NQAGHCLVLLTSMANRPVSVVIL 215


>gi|318604889|emb|CBY26387.1| murein-DD-endopeptidase [Yersinia enterocolitica subsp. palearctica
           Y11]
 gi|330859412|emb|CBX69757.1| D-alanyl-D-alanine endopeptidase [Yersinia enterocolitica W22703]
          Length = 322

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 101/225 (44%), Gaps = 19/225 (8%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N++      DE    AS+TK+MT  ++ +     KL L+  I V     T+
Sbjct: 57  SAMVVDLQTNKVIYANNADEVVPIASITKLMTAMVVLD----AKLPLDEIISVD-IHQTK 111

Query: 114 NPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               ++  ++  +  + +  +L  +  S N  + +      G    F   M+ KAK +GM
Sbjct: 112 EMKGVFSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFINAMNAKAKSLGM 171

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS----IRKFRYRNRII--- 224
             T Y   +GL   N ++TARD   L ++  K +P   +  +    +  FR  N  +   
Sbjct: 172 TKTRYVEPTGL-SINNVSTARDLTKL-LIATKQYPLIGQLSTTTEKMATFREPNYTLPFR 229

Query: 225 -TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            TNH  + N   NI   KTG+T  +G  +       + P+  VV+
Sbjct: 230 NTNH-LVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPVALVVL 273


>gi|19551910|ref|NP_599912.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium glutamicum
           ATCC 13032]
 gi|62389569|ref|YP_224971.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium glutamicum
           ATCC 13032]
 gi|41324903|emb|CAF19385.1| D-ALANYL-D-ALANINE CARBOXYPEPTIDASE [Corynebacterium glutamicum
           ATCC 13032]
          Length = 436

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 18/221 (8%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++  ++   K    RY PAS+ K++   +  +     +L+  T +  +  AA    
Sbjct: 131 MVFDIDSGEIIAAKDPHGRYRPASIIKVLLSLVAID-----ELNPTTVVTGTMEAANIEG 185

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S++ + E   +T +Q +  L+  S ND +    + + G +     + +  AK++G Q+T 
Sbjct: 186 SRVGVGEGGQYTVDQLLHGLLLASGNDAAYLLAQELGGDQATLEKVNA-LAKELGTQDTF 244

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI------ITNHNK 229
               SGL      T+A D +++     +N P +    S     +          + N N 
Sbjct: 245 VATYSGLDAPGMSTSAYDMSLIYQHAWQN-PVFESIISTDHIDFPGWGDNEGFQVWNDNA 303

Query: 230 LLNKMHNIDGI--KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           L   M++ DGI  KTGYT ++    V  L      + AV++
Sbjct: 304 LF--MNDPDGIGGKTGYTDDANHTFVGGLDRGGRRLAAVLL 342


>gi|65319857|ref|ZP_00392816.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A2012]
          Length = 151

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 5/114 (4%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S+I+ID N  ++   K +E     A+L+K+MT YI+ E L    + L+  + +S     A
Sbjct: 37  SAILIDANSGEVVYKKNEENSIQSATLSKLMTEYIVLEQLDKGNIQLDEVVKISNEVFRA 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
             +P ++  K+KT  T    + AL+    N  + A  E I+G+E  F  LM+ K
Sbjct: 97  ETSPIQVTSKDKT--TVRDLLHALLLTGNNRSTLALAEHIAGNEDNFTQLMNQK 148


>gi|271500976|ref|YP_003334001.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Dickeya
           dadantii Ech586]
 gi|270344531|gb|ACZ77296.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Dickeya
           dadantii Ech586]
          Length = 319

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 100/227 (44%), Gaps = 23/227 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N++      +   P AS+TK+MT  ++ +   ++ L     + +S T   Q
Sbjct: 45  SAMVVDMRNNEVLYSSNPDVVVPIASVTKLMTAMVVLD--ANQPLDELISVDISHTKEMQ 102

Query: 114 NP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S++ L  +   +    +L  +  S N  + +      G  + F   M+ KA+ +GM 
Sbjct: 103 GVYSRVRLGSE--ISRHDMLLLALMSSENRAAASLAHHYRGGYQAFITAMNAKARSLGMM 160

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-----------FRYRN 221
           +T Y   +GL   N ++TARD   L ++  K +P   +  +  +             +RN
Sbjct: 161 HTYYVEPTGLSTSN-VSTARDLTKL-LIASKQYPLLSQLSTTHEKTAVFTHPSYTLPFRN 218

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              TNH  +     NI   KTG+T  +G  +V        P+  VV+
Sbjct: 219 ---TNH-LIYRPDWNIQLTKTGFTNQAGHCLVMRTVIGGRPVSLVVL 261


>gi|283479035|emb|CAY74951.1| penicillin-binding protein 7 [Erwinia pyrifoliae DSM 12163]
          Length = 316

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 102/230 (44%), Gaps = 29/230 (12%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS---KTA 110
           S++++D+N N++      D  R  AS+TK+MT+ +           L+  +P+    K  
Sbjct: 46  SAMIVDLNSNKVIYESHPDRVRPIASITKLMTVMVT----------LDAHLPLDEMLKVD 95

Query: 111 ATQNPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
            +  P    +  +    +E       +LAL++ S N  + +      G    F   M+ K
Sbjct: 96  ISHTPQMRGIYSRVRLNSELSRKNMMLLALMS-SENRAAASLAHHYPGGYDAFIRAMNAK 154

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK----YFSIRKFRYRN 221
           A+ +GM +T Y   +GL   N ++TARD + L +   K +P   +    +  +  FR  N
Sbjct: 155 ARALGMSHTRYVEPTGLSIDN-VSTARDLSKL-LQATKRYPLIGQLSTTHEDMASFRSPN 212

Query: 222 RIIT--NHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +   N N L+ +   NI   KTG+T  +G  +V        P+  VV+
Sbjct: 213 YTLPFRNTNHLVYRPDWNIQLTKTGFTNEAGHCLVMRTVINQRPVSLVVL 262


>gi|238784240|ref|ZP_04628252.1| D-alanyl-D-alanine endopeptidase [Yersinia bercovieri ATCC 43970]
 gi|238714807|gb|EEQ06807.1| D-alanyl-D-alanine endopeptidase [Yersinia bercovieri ATCC 43970]
          Length = 313

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 19/225 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N++      +   P AS+TK+MT  ++ +     KL L+  I V     T+
Sbjct: 48  SAMVVDLQTNKVIYANNPDEVVPIASITKLMTAMVVLD----AKLPLDEIISVD-VHQTK 102

Query: 114 NPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               ++  ++  +  + +  +L  +  S N  + +      G    F   M+ KAK +GM
Sbjct: 103 EMKGVFSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFVNAMNVKAKSLGM 162

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS----IRKFRYRNRII--- 224
             T Y   +GL   N ++TARD   L ++  K +P   +  +    +  FR  N  +   
Sbjct: 163 TKTHYTEPTGLSIDN-VSTARDLTKL-LIATKQYPLIGQLSTTTEKMATFREPNYTLPFR 220

Query: 225 -TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            TNH  + N   NI   KTG+T  +G  +         P+  VV+
Sbjct: 221 NTNH-LVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGSRPVALVVL 264


>gi|219558934|ref|ZP_03538010.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis T17]
 gi|260202046|ref|ZP_05769537.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium
           tuberculosis T46]
 gi|289444466|ref|ZP_06434210.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis T46]
 gi|289571098|ref|ZP_06451325.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis T17]
 gi|289417385|gb|EFD14625.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis T46]
 gi|289544852|gb|EFD48500.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis T17]
          Length = 291

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 96/239 (40%), Gaps = 28/239 (11%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDE 73
           +T   G+ +   ++Q  G +             +   P  + IV D++  Q + G  Q+ 
Sbjct: 16  VTVSAGAAWADADVQPAGSV------------PIPDGPAQTWIVADLDSGQVLAGRDQNV 63

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-LKEKTYFTTEQGI 132
              PAS  K++   +  +     +L LN+ + V+  A TQ       +K    +T  Q +
Sbjct: 64  AHPPASTIKVLLALVALD-----ELDLNSTV-VADVADTQAECNCVGVKPGRSYTARQLL 117

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ--ITT 190
             L+  S ND +      + G +   A  M+ KA  +G  +T     SGL        +T
Sbjct: 118 DGLLLVSGNDAANTLAHMLGGQDVTVA-KMNAKAATLGATSTHATTPSGLDGPGGSGAST 176

Query: 191 ARDQAIL--GILLRKNFPQYYKYFSIRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYT 245
           A D  ++    +    F Q     S   F   N  ++I N ++LL +     G KTGYT
Sbjct: 177 AHDLVVIFRAAMANPVFAQITAEPS-AMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYT 234


>gi|296171457|ref|ZP_06852743.1| serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894143|gb|EFG73903.1| serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 294

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 91/204 (44%), Gaps = 20/204 (9%)

Query: 52  PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  + IV D++  Q + G  Q+    PAS  K++   +  +     ++ L++ + V+  A
Sbjct: 44  PAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVTLD-----QVSLDSTV-VADAA 97

Query: 111 ATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            TQ   + + +K    +T  Q +  L+  S ND +      + G E   A  M+ KA  +
Sbjct: 98  DTQVECNCVGVKPGRLYTARQLLDGLLLVSGNDAANTLAHMLGGPEATVA-KMNAKAASL 156

Query: 170 GMQNTIYKNASGLHDKNQI--TTARDQAILGILLRKNF--PQYY----KYFSIRKFRYRN 221
           G  +T     SGL        +TA D   L ++ R     P +     +  ++    + +
Sbjct: 157 GATSTHAATPSGLDGPGGSGSSTAHD---LAVIFRAAMANPVFAHITAEPSAMFPGDHGD 213

Query: 222 RIITNHNKLLNKMHNIDGIKTGYT 245
           ++ITN ++LL +     G KTG+T
Sbjct: 214 QLITNQDELLQRYPGAIGGKTGFT 237


>gi|152981425|ref|YP_001352421.1| D-alanyl-D-alanine-endopeptidase [Janthinobacterium sp. Marseille]
 gi|151281502|gb|ABR89912.1| D-alanyl-D-alanine-endopeptidase [Janthinobacterium sp. Marseille]
          Length = 436

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 89/202 (44%), Gaps = 22/202 (10%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-SKLYLKEKTYFTTEQGILALI 136
           AS+TK+MT  ++ E  Q     +N  + V++    +   S   L+  +  +    +   +
Sbjct: 210 ASITKLMTGLVVVEAQQ----DMNEILEVTEEDIDREKNSSSRLRVGSQLSRANMLHIAL 265

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S N  ++A G    G  + F   M+ KA+ +GM  T Y +++GL   N + +A D A 
Sbjct: 266 MSSENRAASALGRHYPGGIRAFVAAMNAKARSLGMNGTHYVDSTGL-SSNNVASAADLAK 324

Query: 197 LGI------LLRKNFPQYYKYF---SIRKFRYRNRIITNHNKLLNKMHNIDGI-KTGYTR 246
           L I      +LR+ +    KY      R  +Y      N N+L+N      GI KTGY  
Sbjct: 325 LVIAASNHSILRQ-YSTDTKYVVEPGGRALQY-----ANSNRLVNNPDWEIGIQKTGYIS 378

Query: 247 NSGFNIVTSLRYKDDPIVAVVM 268
            +G  +V        PIV + +
Sbjct: 379 EAGRCLVMQANINGRPIVMIFL 400


>gi|15842454|ref|NP_337491.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium tuberculosis
           CDC1551]
 gi|31794087|ref|NP_856580.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium bovis AF2122/97]
 gi|57117035|ref|YP_177914.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium tuberculosis
           H37Rv]
 gi|121638792|ref|YP_979016.1| putative D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|148662755|ref|YP_001284278.1| putative D-alanyl-D-alanine carboxypeptidase DacB2 [Mycobacterium
           tuberculosis H37Ra]
 gi|148824100|ref|YP_001288854.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis F11]
 gi|167969540|ref|ZP_02551817.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis H37Ra]
 gi|215404885|ref|ZP_03417066.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis 02_1987]
 gi|215412754|ref|ZP_03421466.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215428352|ref|ZP_03426271.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis T92]
 gi|215431859|ref|ZP_03429778.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis EAS054]
 gi|218754664|ref|ZP_03533460.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis GM 1503]
 gi|224991284|ref|YP_002645973.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|254233002|ref|ZP_04926329.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis C]
 gi|254365550|ref|ZP_04981595.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254551983|ref|ZP_05142430.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260187930|ref|ZP_05765404.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium
           tuberculosis CPHL_A]
 gi|260206229|ref|ZP_05773720.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium
           tuberculosis K85]
 gi|289448576|ref|ZP_06438320.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis CPHL_A]
 gi|289575616|ref|ZP_06455843.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis K85]
 gi|289746710|ref|ZP_06506088.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis 02_1987]
 gi|289751576|ref|ZP_06510954.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis T92]
 gi|289755023|ref|ZP_06514401.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis EAS054]
 gi|289763087|ref|ZP_06522465.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis GM 1503]
 gi|294993993|ref|ZP_06799684.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium
           tuberculosis 210]
 gi|298526380|ref|ZP_07013789.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306777199|ref|ZP_07415536.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu001]
 gi|306789785|ref|ZP_07428107.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu004]
 gi|306794599|ref|ZP_07432901.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu005]
 gi|306798842|ref|ZP_07437144.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu006]
 gi|306804688|ref|ZP_07441356.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu008]
 gi|306968979|ref|ZP_07481640.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu009]
 gi|306973316|ref|ZP_07485977.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu010]
 gi|307081024|ref|ZP_07490194.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu011]
 gi|307085623|ref|ZP_07494736.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu012]
 gi|308369897|ref|ZP_07419443.2| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu002]
 gi|308371173|ref|ZP_07424068.2| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu003]
 gi|308375921|ref|ZP_07445548.2| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu007]
 gi|7477960|pir||B70928 probable dacB protein - Mycobacterium tuberculosis (strain H37RV)
 gi|13882758|gb|AAK47305.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium tuberculosis
           CDC1551]
 gi|31619682|emb|CAD96622.1| PROBABLE D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACB2
           (PENICILLIN-BINDING PROTEIN) (DD-PEPTIDASE)
           (DD-CARBOXYPEPTIDASE) (PBP) (DD-TRANSPEPTIDASE)
           (SERINE-TYPE D-ALA-D-ALA CARBOXYPEPTIDASE)
           [Mycobacterium bovis AF2122/97]
 gi|41352764|emb|CAE55530.1| PROBABLE D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACB2
           (PENICILLIN-BINDING PROTEIN) (DD-PEPTIDASE)
           (DD-CARBOXYPEPTIDASE) (PBP) (DD-TRANSPEPTIDASE)
           (SERINE-TYPE D-ALA-D-ALA CARBOXYPEPTIDASE) (D-AMINO ACID
           HYDROLASE) [Mycobacterium tuberculosis H37Rv]
 gi|121494440|emb|CAL72921.1| probable D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|124602061|gb|EAY61071.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis C]
 gi|134151063|gb|EBA43108.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148506907|gb|ABQ74716.1| putative D-alanyl-D-alanine carboxypeptidase DacB2 [Mycobacterium
           tuberculosis H37Ra]
 gi|148722627|gb|ABR07252.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis F11]
 gi|224774399|dbj|BAH27205.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|289421534|gb|EFD18735.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis CPHL_A]
 gi|289540047|gb|EFD44625.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis K85]
 gi|289687238|gb|EFD54726.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis 02_1987]
 gi|289692163|gb|EFD59592.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis T92]
 gi|289695610|gb|EFD63039.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis EAS054]
 gi|289710593|gb|EFD74609.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis GM 1503]
 gi|298496174|gb|EFI31468.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308214481|gb|EFO73880.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu001]
 gi|308326092|gb|EFP14943.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu002]
 gi|308329656|gb|EFP18507.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu003]
 gi|308333795|gb|EFP22646.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu004]
 gi|308337189|gb|EFP26040.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu005]
 gi|308340920|gb|EFP29771.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu006]
 gi|308344832|gb|EFP33683.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu007]
 gi|308348780|gb|EFP37631.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu008]
 gi|308353481|gb|EFP42332.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu009]
 gi|308357346|gb|EFP46197.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu010]
 gi|308361230|gb|EFP50081.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu011]
 gi|308364850|gb|EFP53701.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu012]
 gi|323718521|gb|EGB27692.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis CDC1551A]
 gi|326904525|gb|EGE51458.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis W-148]
          Length = 291

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 96/239 (40%), Gaps = 28/239 (11%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDE 73
           +T   G+ +   ++Q  G +             +   P  + IV D++  Q + G  Q+ 
Sbjct: 16  VTVSAGAAWADADVQPAGSV------------PIPDGPAQTWIVADLDSGQVLAGRDQNV 63

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-LKEKTYFTTEQGI 132
              PAS  K++   +  +     +L LN+ + V+  A TQ       +K    +T  Q +
Sbjct: 64  AHPPASTIKVLLALVALD-----ELDLNSTV-VADVADTQAECNCVGVKPGRSYTARQLL 117

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ--ITT 190
             L+  S ND +      + G +   A  M+ KA  +G  +T     SGL        +T
Sbjct: 118 DGLLLVSGNDAANTLAHMLGGQDVTVA-KMNAKAATLGATSTHATTPSGLDGPGGSGAST 176

Query: 191 ARDQAIL--GILLRKNFPQYYKYFSIRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYT 245
           A D  ++    +    F Q     S   F   N  ++I N ++LL +     G KTGYT
Sbjct: 177 AHDLVVIFRAAMANPVFAQITAEPS-AMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYT 234


>gi|238757296|ref|ZP_04618483.1| D-alanyl-D-alanine endopeptidase [Yersinia aldovae ATCC 35236]
 gi|238704674|gb|EEP97204.1| D-alanyl-D-alanine endopeptidase [Yersinia aldovae ATCC 35236]
          Length = 311

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 102/225 (45%), Gaps = 19/225 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N++      +   P AS+TK+MT  ++ +     KL L+  I V     T+
Sbjct: 46  SAMVVDLQTNKVIYANNIDEVVPIASITKLMTAMVVLD----AKLPLDEVISVD-IHQTK 100

Query: 114 NPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               ++  ++  +  + +  +L  +  S N  + +      G    F   M+ KAK +GM
Sbjct: 101 ELKGVFSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNAKAKSLGM 160

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS----IRKFRYRNRII--- 224
            +T Y   +GL   N ++TARD   + ++  K +P   +  +    +  FR  N  +   
Sbjct: 161 THTRYVEPTGL-SINNVSTARDLTKM-LMASKQYPLIGQLSTTTEKMATFREPNYTLPFR 218

Query: 225 -TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            TNH  + N   NI   KTG+T  +G  +       + P+  VV+
Sbjct: 219 NTNH-LVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPVALVVL 262


>gi|330900670|gb|EGH32089.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 266

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 22/203 (10%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG----IL 133
           AS+TK+MT  ++ +  Q     ++  IPV+    +Q P    +  +    +E      +L
Sbjct: 23  ASVTKLMTAMVVLDAKQP----MDEVIPVN---ISQTPEMKGVFSRVKLGSEMNRRDMLL 75

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
             +  S N  + +      G    F + M+ KAK +GM++T Y   +GL   N ++TARD
Sbjct: 76  ITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKALGMKHTAYVEPTGLSVYN-VSTARD 134

Query: 194 QAILGILLRKNFP-------QYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYT 245
              L +  RK +P          K  + RK  Y     +N + L+ K + +I   KTG+T
Sbjct: 135 LTKLVMAARK-YPLLSELSTTEQKTVTFRKPTY-TLGFSNTDHLVRKDNWDIKLTKTGFT 192

Query: 246 RNSGFNIVTSLRYKDDPIVAVVM 268
             +G  +V      + P+  V++
Sbjct: 193 NQAGHCLVLLTSMANRPVSVVIL 215


>gi|259909020|ref|YP_002649376.1| D-alanyl-D-alanine endopeptidase [Erwinia pyrifoliae Ep1/96]
 gi|224964642|emb|CAX56156.1| Penicillin-binding protein 7 (D-alanyl-D-alanine-endopeptidase)
           [Erwinia pyrifoliae Ep1/96]
          Length = 295

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 102/230 (44%), Gaps = 29/230 (12%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS---KTA 110
           S++++D+N N++      D  R  AS+TK+MT+ +           L+  +P+    K  
Sbjct: 25  SAMIVDLNSNKVIYESHPDRVRPIASITKLMTVMVT----------LDAHLPLDEMLKVD 74

Query: 111 ATQNPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
            +  P    +  +    +E       +LAL++ S N  + +      G    F   M+ K
Sbjct: 75  ISHTPQMRGIYSRVRLNSELSRKNMMLLALMS-SENRAAASLAHHYPGGYDAFIRAMNAK 133

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK----YFSIRKFRYRN 221
           A+ +GM +T Y   +GL   N ++TARD + L +   K +P   +    +  +  FR  N
Sbjct: 134 ARALGMSHTRYVEPTGLSIDN-VSTARDLSKL-LQATKRYPLIGQLSTTHEDMASFRSPN 191

Query: 222 RIIT--NHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +   N N L+ +   NI   KTG+T  +G  +V        P+  VV+
Sbjct: 192 YTLPFRNTNHLVYRPDWNIQLTKTGFTNEAGHCLVMRTVINQRPVSLVVL 241


>gi|167913835|ref|ZP_02500926.1| family S11 unassigned peptidase [Burkholderia pseudomallei 112]
          Length = 493

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 88/190 (46%), Gaps = 28/190 (14%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           AS+TK+MT  ++ +        L+ +I V+     Q+    S+L +   +  + +  +  
Sbjct: 136 ASVTKLMTAMVVLD----SNAPLDERIEVTDDDRDQDKFTGSRLAIG--SALSRDDMLHI 189

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A   +  G  + F   M+ KA+ +GM +T ++N +GL  K+ +++ARD 
Sbjct: 190 ALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVDTYFENPTGL-SKHNVSSARD- 247

Query: 195 AILGILLRKNFPQYYKYFSIRKF----RY------RNRIITNHNKLL-NKMHNIDGIKTG 243
                 L K     Y+Y  IR++    +Y      R     + N LL +   NI   KTG
Sbjct: 248 ------LAKMVEAAYQYPLIRQYSTDLKYDVDTGLRTLYYHSTNVLLRDNAWNIGVQKTG 301

Query: 244 YTRNSGFNIV 253
           Y + SG  +V
Sbjct: 302 YIKESGICLV 311


>gi|21222221|ref|NP_628000.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces coelicolor A3(2)]
 gi|256786685|ref|ZP_05525116.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
 gi|5457246|emb|CAB46934.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           coelicolor A3(2)]
          Length = 314

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 97/233 (41%), Gaps = 24/233 (10%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV----SKTAATQNPSKLYLKEKTYFT 127
           D  R   S TK+MT  ++   L   KL+L+ ++ +    S    ++N S   L      T
Sbjct: 80  DTRRSTGSTTKIMTAKVV---LSQPKLNLDAKVTIQMAYSDYIVSKNASSARLIVGDKVT 136

Query: 128 TEQGILALITRSANDVSTAFGE-FISGSE-----KKFAILMSNKAKKIGMQNTIYKNASG 181
             Q +  L+  S  D + A  + F SG       K F   M+  AK +G++NT + +  G
Sbjct: 137 VRQLLYGLMLPSGCDAAYALADKFGSGRTRAARVKSFIGKMNATAKSLGLKNTHFDSFDG 196

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI----------ITNHNKLL 231
           + +    +T RD   +     KN   +      +K+  + R            TN N LL
Sbjct: 197 IGNGKNYSTPRDLTKIASSAMKN-STFRTIVKTKKYTAKTRTKKGGTRTMAPWTNTNTLL 255

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                  G+KTG    + + +V +   K   ++  V+   +S +R + A +L+
Sbjct: 256 GSYSGAIGVKTGSGPEAKYCLVFAATRKGKTVIGTVLASSSSAQRAKDATKLM 308


>gi|290890204|ref|ZP_06553285.1| hypothetical protein AWRIB429_0675 [Oenococcus oeni AWRIB429]
 gi|290480150|gb|EFD88793.1| hypothetical protein AWRIB429_0675 [Oenococcus oeni AWRIB429]
          Length = 423

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 107/247 (43%), Gaps = 39/247 (15%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAAT 112
           +IVID    Q+   K  + RYP AS++K++  Y++ + ++  K+ LNT+  IP    A +
Sbjct: 41  AIVIDEKTGQILASKNADKRYPIASISKLLIAYLVEKRIKENKISLNTKVKIPSGIVAIS 100

Query: 113 QNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN------ 164
           Q  +   + L     +T ++ +   +  S N  + A G  I+GS  K    M        
Sbjct: 101 QETTITNVPLSATRSYTIKELLEDALLPSGNGAAIALGAAITGSVSKTETAMEKLLSSWN 160

Query: 165 -KAKKI----GMQNT---IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            K  KI    G+ N     YK+     D     +A++ A +   L  +FP      SIRK
Sbjct: 161 IKGVKIYSPAGLTNGEMGAYKDKLASDDAENKLSAKELAEVSRHLMLDFP------SIRK 214

Query: 217 FRYRNR-----------IITNHNKLLNKM---HNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
              ++             I N N+LL  +   +   GIKTG   + G N +   R K   
Sbjct: 215 ITDKSSAVVSSTSGSSYTIENTNQLLKNIKSPYKFTGIKTGSAESIGGNFIGETRIKGQK 274

Query: 263 IVAVVMG 269
           ++ VV+G
Sbjct: 275 VITVVLG 281


>gi|313631512|gb|EFR98800.1| D-alanyl-D-alanine carboxypeptidase DacA [Listeria seeligeri FSL
           N1-067]
          Length = 305

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 24/141 (17%)

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAI 196
           I+GSEK+F  +M+ KA+++ +    + NA+GL+              D+N++ TAR  A 
Sbjct: 2   IAGSEKEFVAMMNKKAEELKLGEHQFVNATGLNNEDLKGGQQVGGPKDENKM-TARGMAK 60

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM----HNIDGIKTGYTRN 247
           L   L  ++P+  K  S  K  +R        +TN N LL  +      +DG+KTG T  
Sbjct: 61  LAKHLINDYPEVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTGTTDY 120

Query: 248 SGFNIVTSLRYKDDPIVAVVM 268
           +G  +  +       ++ VV+
Sbjct: 121 AGMCLTATAVQDGMRVITVVL 141


>gi|299782758|gb|ADJ40756.1| Serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus fermentum
           CECT 5716]
          Length = 389

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 105/240 (43%), Gaps = 27/240 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-- 111
           ++I ID    Q+   K    +   AS++K++T+ +I + +++ KL  NT++ V+K  A  
Sbjct: 60  AAIAIDATTGQVLYXKNANTKLAIASISKJITVGVIEQEIKAGKLSWNTKVKVTKEEAKL 119

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           ++N   S + L     +T ++   A + +SA+  +         S   F   M    KK 
Sbjct: 120 SENTEYSNITLTAGKSYTVKELTEAAMIKSADAAAITLSRATGDSTASFVKKMQAFVKKA 179

Query: 170 GMQNTIYKNASGLHD---------------KNQITTARDQAILGILLRKNFPQYYKYFSI 214
           G+ +    N  GL +               +N++T A D A +   L KN+P       +
Sbjct: 180 GVTDAKLYNQVGLTNSQMGSYGLKGVAKNAENEMT-ATDVAKIAQYLIKNYPSLLNITKL 238

Query: 215 RKFRYRNRIITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                    +T  NK+L    +      IDG+KTG +  +G   V++  Y+   I+ VV+
Sbjct: 239 TSTTIDGTTVTTINKMLAGQSDAPTQVKIDGLKTGTSDKAGACFVSTGTYQGHRIITVVL 298


>gi|227874487|ref|ZP_03992662.1| conserved hypothetical protein [Oribacterium sinus F0268]
 gi|227839676|gb|EEJ50131.1| conserved hypothetical protein [Oribacterium sinus F0268]
          Length = 382

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 103/248 (41%), Gaps = 24/248 (9%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLN 101
           S+ SE++A     ++V D+++  + G K       PAS+TK+MTL +  E L   +  + 
Sbjct: 126 SIGSEVNAN---YAVVFDLDQGTILGEKNSSVSMNPASMTKVMTLLVAVENLPDLEKKIT 182

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
               +      +  S            +  +  +I  S  D   A  + I+GSE  F  L
Sbjct: 183 ITQDIVDYVKARGASNCGFVAGEQVRVKDLLYGVILPSGADAVLALAKEIAGSEAGFVAL 242

Query: 162 MSNKAKKIGMQNTI-YKNASGLHDKNQITTARD-QAILGILLRKNFPQYYKYFSIRKFRY 219
           M+ KA+ +G+ +   ++NA+GL+        +D   I+   +R +  +      +    Y
Sbjct: 243 MNKKAQDLGLSSDCKFQNATGLYHSTHHMNVKDIGEIMAAAMRNSLAREV----LSTENY 298

Query: 220 RNRIITNHN---KLLN------KMHNIDG-----IKTGYTRNSGFNIVTSLRYKDDPIVA 265
           +      H    KL N      K  +  G      KTG+ R S F  V+S +  +   + 
Sbjct: 299 QIPATNKHGDGIKLTNLFVQRIKGQDTGGASVTMAKTGFVRQSMFCAVSSGKGANGKNLL 358

Query: 266 VVMGMPTS 273
           VV G  +S
Sbjct: 359 VVTGYSSS 366


>gi|170691174|ref|ZP_02882340.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           graminis C4D1M]
 gi|170144423|gb|EDT12585.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           graminis C4D1M]
          Length = 410

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 18/154 (11%)

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           +AL++ S N  + A     +G    F   M+ KA+ +GM++T + N +GL   N ++TAR
Sbjct: 248 IALMS-SENRAAAALSRDYAGGRPGFVAAMNAKARALGMRHTSFVNGTGLSPHN-VSTAR 305

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI-----------K 241
           D A L +     +P    Y + R       +     +     HN + +           K
Sbjct: 306 DLARL-VAAASRYPLIRAYSTDRD----QWVFPGGPRARLSYHNSNALVRSGDRSIVLQK 360

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           TG+   +G  +V  +     PI  VV+G P   +
Sbjct: 361 TGFINEAGHCVVVRMIVHGRPIDIVVLGAPGPHD 394


>gi|330817941|ref|YP_004361646.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           gladioli BSR3]
 gi|327370334|gb|AEA61690.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           gladioli BSR3]
          Length = 411

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 20/162 (12%)

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           +AL++ S N  + A      G    F   M+ KA+ +GM NT + NA+GL  +N ++TAR
Sbjct: 250 IALMS-SENRAAAALSRDYPGGRPAFVAAMNRKARTLGMSNTHFVNATGLSPRN-VSTAR 307

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRY-RNRII-TNHNKL--LNKMHNIDGI-------K 241
           D       L +      +Y +IR F   R +I+   H +L  +N    + G        K
Sbjct: 308 D-------LSRLVAAANRYSTIRAFSTDRAQIVRPGHGQLSYVNSNALVRGGDRRITLQK 360

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           TG+   +G  +V   +    P+  V++  P  ++    A+ +
Sbjct: 361 TGFINEAGHCVVMRYQIGARPVDVVLLDAPGPRDHIADAIRI 402


>gi|118617116|ref|YP_905448.1| penicillin-binding protein DacC [Mycobacterium ulcerans Agy99]
 gi|118569226|gb|ABL03977.1| penicillin-binding protein DacC [Mycobacterium ulcerans Agy99]
          Length = 415

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 24/224 (10%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++   +   +    R+ PAS+ K++ + +       K+L+ N  +P +   +    
Sbjct: 108 LVGDLDSGAIIAARDPHGRHRPASIIKVLVVMVSI-----KELNQNKAVPGTNDDSAAEG 162

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE---KKFAILMSNKAKKIGMQ 172
           +K+ +     +T  Q +  L+  S ND + A    + G +   +K  +L    A K+G +
Sbjct: 163 TKVGVNAGGMYTVNQLLHGLLMHSGNDAAHALAIQLGGMQTALEKINML----AAKLGGR 218

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYRNRI------I 224
           +T     SGL      T+A D   +G+  R  +  P +    + R F +          +
Sbjct: 219 DTRVATPSGLDGPGMSTSAYD---IGLFYRYAWQNPIFADIVATRTFDFPGHGEHPGYEL 275

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            N N LL       G KTGYT ++G   V +  +    + AV++
Sbjct: 276 ENDNHLLYNYPGALGGKTGYTDDAGQTFVGAANHNGRRLFAVLL 319


>gi|221124426|ref|XP_002164451.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 257

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 24/188 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQNPSKLYLKEKTYFTTEQGILALI 136
           AS+TK+MT  ++ E     +L ++  I +++    T+  S   L+  T  +  + +   +
Sbjct: 22  ASITKLMTGVVVSE----ARLSMDETIEITQADVDTEKGSSSRLRVGTELSRGELLHLAL 77

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S N  + A G    G  + F  LM+ KA+ +GM +T Y   +GL+ +NQ ++A+D A 
Sbjct: 78  MASENRAAHALGRTFPGGLQHFVGLMNQKARILGMTDTQYVEPTGLNSRNQ-SSAKDLAT 136

Query: 197 LGILLRKNFPQYYKYFSIRKF--------RYRNRII--TNHNKLL-NKMHNIDGIKTGYT 245
           L      N+   Y   ++R+            NR +   N N+L+ N    I   KTGY 
Sbjct: 137 L-----VNYA--YSDATLRELSTSTGYQVEVGNRTLQYNNTNRLVKNPAWEIGLQKTGYI 189

Query: 246 RNSGFNIV 253
             +G  +V
Sbjct: 190 TEAGQCLV 197


>gi|146305107|ref|YP_001185572.1| D-alanyl-D-alanine endopeptidase [Pseudomonas mendocina ymp]
 gi|145573308|gb|ABP82840.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Pseudomonas mendocina ymp]
          Length = 300

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 102/226 (45%), Gaps = 19/226 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+++ID+   +       + R P AS+TK+MT  ++ +     KL L+  +P++    T+
Sbjct: 36  SALLIDLKTGKELYSSNPDLRLPVASVTKLMTAMVVLD----AKLPLDEVLPIT-IRDTK 90

Query: 114 NPSKLYLKEK--TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +Y + +  +  +    +   +  S N  + +      G    F   M+ KAK +GM
Sbjct: 91  EMQGVYSRVRIGSEISRRDMLHLALMSSENRAAASLAHHYPGGHVAFVAAMNAKAKALGM 150

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY-------FSIRKFRYRNRII 224
            N+ +   +G+ ++N + TARD A++ I   + +P   ++        + RK  Y     
Sbjct: 151 HNSHFVEPTGMSERN-VATARDLALM-IKATQQYPLIGQFSTDSEATVTFRKPTY-TLGF 207

Query: 225 TNHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            N N L+ K   +I   KTG+T  +G  +V         +  VV+G
Sbjct: 208 RNTNALVRKPDWDIGMSKTGFTNAAGRCLVMLTSMNQRSVAFVVLG 253


>gi|238788777|ref|ZP_04632568.1| D-alanyl-D-alanine endopeptidase [Yersinia frederiksenii ATCC
           33641]
 gi|238723082|gb|EEQ14731.1| D-alanyl-D-alanine endopeptidase [Yersinia frederiksenii ATCC
           33641]
          Length = 322

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 19/225 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++VID+  N++      +   P AS+TK+MT  ++ +     KL L+  I V     T+
Sbjct: 57  SAMVIDLQTNKVIYSNNADEVVPIASITKLMTAMVVLD----AKLPLDEIISVD-IHQTK 111

Query: 114 NPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +Y  ++  +  + +  +L  +  S N  + +      G    F   M+ KAK +GM
Sbjct: 112 EMKGVYSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNAKAKSLGM 171

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS----IRKFRYRNRII--- 224
             T Y   +GL   N ++TARD   L ++  K +P   +  +    +  FR  N  +   
Sbjct: 172 TKTRYVEPTGLSIGN-VSTARDLTKL-LVATKQYPLIGQLSTTTEKMATFRDPNYTLPFR 229

Query: 225 -TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            TNH  + N   NI   KTG+T  +G  +         P+  VV+
Sbjct: 230 NTNH-LVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGHRPVALVVL 273


>gi|238798922|ref|ZP_04642387.1| D-alanyl-D-alanine endopeptidase [Yersinia mollaretii ATCC 43969]
 gi|238717232|gb|EEQ09083.1| D-alanyl-D-alanine endopeptidase [Yersinia mollaretii ATCC 43969]
          Length = 313

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 101/225 (44%), Gaps = 19/225 (8%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N+ +     DE    AS+TK+MT  ++ +     KL L+  I V     T+
Sbjct: 48  SAMVVDLQTNKAIYANNADEVVPIASITKLMTAMVVLD----AKLPLDEIISVD-IHQTK 102

Query: 114 NPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               ++  ++  +  + +  +L  +  S N  + +      G    F   M+ KAK +GM
Sbjct: 103 EMKGVFSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNAKAKSLGM 162

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS----IRKFRYRNRII--- 224
             T Y   +GL   N ++TARD   L ++  K +P   +  +    +  FR  N  +   
Sbjct: 163 TKTRYVEPTGL-SINNVSTARDLTKL-LIATKQYPLIGQLSTTTEKMATFREPNYTLPFR 220

Query: 225 -TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            TNH  + N   NI   KTG+T  +G  +       + P+  VV+
Sbjct: 221 NTNH-LVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPVALVVL 264


>gi|302879653|ref|YP_003848217.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Gallionella
           capsiferriformans ES-2]
 gi|302582442|gb|ADL56453.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Gallionella
           capsiferriformans ES-2]
          Length = 347

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 95/200 (47%), Gaps = 17/200 (8%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILA 134
           AS+TK+MT  ++ +     +  LN  + V +          S+L +   T+  +E   LA
Sbjct: 124 ASITKLMTAMVVLD----AEPDLNEALSVGEADFDILKGTHSRLGVG-TTFIRSEMLKLA 178

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           L++ S N  ++       G        M+ KA+K+GM +T +++ +GL+ +N ++TARD 
Sbjct: 179 LMS-SENRAASVLARNYPGGMAAAVAAMNAKARKLGMTHTTFRDPTGLNSEN-VSTARDL 236

Query: 195 AILGILLRKNFPQYYKY-----FSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNS 248
             + +   +N+   ++Y      S+   R R     N N L+ N    I   KTGY   +
Sbjct: 237 VKM-VAAARNYKLIHQYTTTATHSVEGARGRELTFNNTNPLVKNASWEIGVSKTGYINEA 295

Query: 249 GFNIVTSLRYKDDPIVAVVM 268
           G  +V   + +  P++ V++
Sbjct: 296 GRCLVMQAQIRQRPVIIVLL 315


>gi|226942291|ref|YP_002797364.1| penicillin-binding protein 7 [Azotobacter vinelandii DJ]
 gi|226717218|gb|ACO76389.1| penicillin-binding protein 7 precursor [Azotobacter vinelandii DJ]
          Length = 318

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 101/226 (44%), Gaps = 21/226 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++VID+N  +       +   P AS++K+MT  +  +  Q     L+  IPV +   T+
Sbjct: 44  SALVIDLNTGRELFANHPDVIVPIASISKLMTAMVTLDARQP----LDEAIPV-RIHDTR 98

Query: 114 NPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +Y  ++  +  +  + +   +  S N  + +      G   +F   M+ KA+ + M
Sbjct: 99  ELRGVYSRVRVNSLISRREMLRLALMSSENRAAASLAHNYPGGHARFVAAMNAKARALSM 158

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRK--------NFPQYYKYFSIRKFRYRNRI 223
            +T +   +GL ++N ++TARD A L    R+          P +  YF  ++ RY    
Sbjct: 159 HSTRFVEPTGLSERN-VSTARDLAKLLRAARQYPLIRELSTTPSHSAYF--QQPRYVQN- 214

Query: 224 ITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             N N L+ N    I+  KTG+   +G  +      ++ P+  V++
Sbjct: 215 FNNTNPLVRNPDWRIEVTKTGFIDEAGHCLALLAVIQNRPVAMVLL 260


>gi|220928795|ref|YP_002505704.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           cellulolyticum H10]
 gi|219999123|gb|ACL75724.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           cellulolyticum H10]
          Length = 440

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 116/282 (41%), Gaps = 51/282 (18%)

Query: 37  LSIIMISMASELHAKPKYSS---------IVIDVNKNQMT-GFKQDEPRYPASLTKMMTL 86
           L+ ++IS+   L   P +S+         I++D     +    K D    PAS TK+ T 
Sbjct: 5   LATLIISLTILLQVSPAFSANLDIDAASYILMDAKTGSVLYEHKPDLKWRPASTTKIATA 64

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSANDV 143
            +       K+ +++  +  S  A T        + +      +    + AL+  SAN+ 
Sbjct: 65  LVAL-----KEGNMDQVMTASNEAVTDIGVGGMNIGIMPGEQMSLNDLLHALLIVSANET 119

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----DKNQITTARDQAILGI 199
           +    E +   + KF   M+  + ++G +NT + N SG+     D N  ++ARD A    
Sbjct: 120 ANIISENLYNDKSKFLEEMNKVSAEVGAKNTTFTNPSGIDEYEKDANHFSSARDLA---- 175

Query: 200 LLRKNFPQYYKYFSIRKFRYRN-----------RIITNHNKLLNK-------------MH 235
           L+ K   +Y  +  I + +  N            ++   NKLL +               
Sbjct: 176 LIAKECLKYPVFREIVEQKQLNMLPPTNKHKTWNVLNTTNKLLGQSFKYGPETGDDRNQF 235

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQER 276
            I G+KTG T  +G N ++S   KD   +++VV+G+     R
Sbjct: 236 TITGLKTGSTLRAGANFISSAVNKDGLELISVVLGVNNKPNR 277


>gi|302867864|ref|YP_003836501.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Micromonospora
           aurantiaca ATCC 27029]
 gi|302570723|gb|ADL46925.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Micromonospora
           aurantiaca ATCC 27029]
          Length = 427

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 94/232 (40%), Gaps = 30/232 (12%)

Query: 32  GKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTG-FKQDEPRYPASLTKMMTLY 87
           G+ L  + +++   S   A P  ++   +V D++  ++ G      P  PAS  K++   
Sbjct: 72  GEALAGAGLVVPPGSP--APPAVTATTWLVADLDTGEVLGACGAHVPGTPASTQKLLLAA 129

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
            +   L  K + + T+  +     +   S + L     ++ E   L L+ +S ND +   
Sbjct: 130 TMLSRLDPKHVAVATRADLDIEPGS---SAVGLLVGGRYSVETLWLGLLLQSGNDAANML 186

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
               +GS +     M+ +A+++G   T     SGL    Q T+A D   L ++ R  F  
Sbjct: 187 ARLGAGSAQAGVAEMNEQARRLGAGQTHAVTPSGLDGPGQFTSAYD---LALIARACF-- 241

Query: 208 YYKYFSIRKFRYRNRI--------------ITNHNKLLNKMHNIDGIKTGYT 245
                + R++    R               I N N+L+ +     G KTG+T
Sbjct: 242 --ADAAFRRYALTERTQIPAQPALKKGGFQIQNENQLIYRYPGALGGKTGFT 291


>gi|256852167|ref|ZP_05557553.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus jensenii
           27-2-CHN]
 gi|260661800|ref|ZP_05862711.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus jensenii
           115-3-CHN]
 gi|282933532|ref|ZP_06338903.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
           208-1]
 gi|297205668|ref|ZP_06923064.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus jensenii
           JV-V16]
 gi|256615213|gb|EEU20404.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus jensenii
           27-2-CHN]
 gi|260547547|gb|EEX23526.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus jensenii
           115-3-CHN]
 gi|281302346|gb|EFA94577.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
           208-1]
 gi|297150246|gb|EFH30543.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus jensenii
           JV-V16]
          Length = 422

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 112/253 (44%), Gaps = 31/253 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKT 109
           ++I ID    ++   K      P AS++K++T+Y+  + ++  KL  N ++     + K 
Sbjct: 47  AAITIDKKTGEVLYAKNAAQALPIASMSKLITIYLTLQAIKDGKLSWNQKLTPTKNIVKL 106

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-----------KKF 158
           +   + S + L+EK  +T +Q   A +  SAN       + + GS+           KK+
Sbjct: 107 SNNSDYSNVPLQEKHQYTVKQLYEASLIESANGAVMMLAQAVYGSQENAVNQMRTLLKKW 166

Query: 159 AILMSNKAKKIGMQNTIYKN----ASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
            I  +      G++N    +     +G + +N+I       I+  LL  ++P+      +
Sbjct: 167 NITDAQIYTTCGLKNGEVGSDAYPGAGKNVENEIPAVGVAKIVDHLLT-DYPEILNTSKL 225

Query: 215 RKFRYRNRI----ITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
            +  +++      + N N +L      +  + +DG+KTG +  +G     +L+YK   ++
Sbjct: 226 AELDFKDGSTVTKMQNWNWMLKGLSQYDSAYPLDGLKTGTSEKAGACFAGTLKYKGRRLI 285

Query: 265 AVVMGMPTSQERD 277
            +VMG   +   D
Sbjct: 286 TIVMGAKHADGTD 298


>gi|213026275|ref|ZP_03340722.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 76

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL--NKMHNIDGIKTGYTRN 247
           TARD A+LG  L  + P  Y     ++F + N    N N+LL    +H +DG+KTG T  
Sbjct: 1   TARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLH-VDGMKTGTTAG 59

Query: 248 SGFNIVTSLRYKD 260
           +G+N+V S    D
Sbjct: 60  AGYNLVASATQGD 72


>gi|199597923|ref|ZP_03211348.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus HN001]
 gi|258507249|ref|YP_003170000.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus GG]
 gi|199591180|gb|EDY99261.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus HN001]
 gi|257147176|emb|CAR86149.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus GG]
 gi|259648615|dbj|BAI40777.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus GG]
          Length = 436

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 104/221 (47%), Gaps = 31/221 (14%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGIL 133
           AS+TKM+++ ++ + ++S K+  + ++ + ++  T    ++ S + L+    ++  +   
Sbjct: 66  ASMTKMISIELVLDAIKSGKIKWDDKVTLDQSIWTISQDRDLSNVPLRRDGSYSVRELYD 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD--------- 184
           A +  SAN       + ++GS++KF   M  K K  G+ +    N +GL++         
Sbjct: 126 ASLIYSANAAMMLLAKAVAGSQEKFVNQMDAKLKSWGITDAKIVNVTGLNNSQLKDAKVP 185

Query: 185 ------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL-- 231
                 +N++ +A+D A +   L K+ P+  K  SI +  +R        + N + +L  
Sbjct: 186 GTGDNAENEM-SAKDMAQVAQHLIKDHPEVLKTTSIARQTFRKGTDDAINMENWDWMLKG 244

Query: 232 ----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
               +K   +DG+KTG +  +G     ++      I+ VV+
Sbjct: 245 LVSYDKNLPVDGLKTGTSDAAGDCFTGTVEKNGMRIITVVL 285


>gi|311106462|ref|YP_003979315.1| D-alanyl-D-alanine endopeptidase 1 [Achromobacter xylosoxidans A8]
 gi|310761151|gb|ADP16600.1| D-alanyl-D-alanine endopeptidase 1 [Achromobacter xylosoxidans A8]
          Length = 331

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 105/212 (49%), Gaps = 16/212 (7%)

Query: 53  KYSSIVI-DVNKNQMTGFKQDEP--RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           K S+I++ D++ +++  F ++E   R  AS+TK+MT   + +      L ++  I +  +
Sbjct: 91  KSSTILVQDLDTSEVL-FARNEGAVRPIASITKLMTALTLVK----AGLPMDEIITIDAS 145

Query: 110 ---AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
              +A++ PS+L    K     +   LAL+  S N  + A G   +G    F   M+ +A
Sbjct: 146 DTRSASELPSRLTAGTK-LSRADLLRLALVP-SENSAAQALGRTYTGGSAAFVAAMNAEA 203

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
           + +GM ++ +   SGL ++NQ ++ARD   L   +    P   +Y     ++   +   N
Sbjct: 204 RALGMTDSSFAEPSGLSNENQ-SSARDLVKLLAAISAQ-PLISQYTGETSYQAAGQTFRN 261

Query: 227 HNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLR 257
            N L+ +   +I   KTG TR +G  +V +++
Sbjct: 262 TNILVGRPQWDILVSKTGTTREAGDCLVMAVK 293


>gi|167835875|ref|ZP_02462758.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis MSMB43]
          Length = 369

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 38/217 (17%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTY--FTTEQ-GILA 134
           AS+TK+M   +           L+T+ P+S+      P ++  +++ Y  FT  +  + +
Sbjct: 155 ASVTKLMMSMVA----------LDTRAPMSR------PLRVSAQDRDYEKFTGSRLKVGS 198

Query: 135 LITR----------SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
           +++R          S N  + A      G    F   M+ KA+ +GM+ T + NA+GL  
Sbjct: 199 VLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFVAAMNRKARTLGMKRTHFVNATGLSP 258

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFS--IRKFRYRNRI---ITNHNKLLNKMH-NID 238
           +N ++TARD + L +     +P + K FS    K  + NR      N N L+     +I 
Sbjct: 259 RN-VSTARDLSRL-VAAANRYP-HIKTFSTDTSKTVFPNRGELRYVNSNALVRAGDSSIV 315

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
             KTG+   +G  +V     +  P+  V++G P   +
Sbjct: 316 LQKTGFINEAGHCVVLRYAVRGRPVDIVLLGAPGPHD 352


>gi|260663757|ref|ZP_05864644.1| D-alanyl-D-alanine [Lactobacillus fermentum 28-3-CHN]
 gi|260551706|gb|EEX24823.1| D-alanyl-D-alanine [Lactobacillus fermentum 28-3-CHN]
          Length = 431

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 103/238 (43%), Gaps = 27/238 (11%)

Query: 57  IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA--TQ 113
           I ID    Q+   K    +   AS++K++T+ +I + +++ KL  NT++ V+K  A  ++
Sbjct: 62  IAIDATTGQVLYAKNANTQLAIASISKLITVGVIEQEIKAGKLSWNTKVKVTKEEAKLSE 121

Query: 114 NP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           N   S + L     +T ++   A + +SA+  +         S   F   M    KK G+
Sbjct: 122 NTEYSNITLTAGKSYTVKELTEAAMIKSADAAAITLSRATGDSTASFVKKMQTFVKKAGV 181

Query: 172 QNTIYKNASGLHD---------------KNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            +    N  GL +               +N++T A D A L   L KN+P       +  
Sbjct: 182 TDAKLYNQVGLTNSQMGSYGLKGVAKNAENEMT-ATDVAKLAQYLIKNYPSLLNITKMTS 240

Query: 217 FRYRNRIITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                  +T  NK+L    +      IDG+KTG +  +G   V++  Y+   I+ VV+
Sbjct: 241 TTIDGTTVTTINKMLPGQSDAPTQVKIDGLKTGTSDKAGACFVSTGTYQGHRIITVVL 298


>gi|315505734|ref|YP_004084621.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Micromonospora
           sp. L5]
 gi|315412353|gb|ADU10470.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Micromonospora
           sp. L5]
          Length = 428

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 94/232 (40%), Gaps = 30/232 (12%)

Query: 32  GKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTG-FKQDEPRYPASLTKMMTLY 87
           G+ L  + +++   S   A P  ++   +V D++  ++ G      P  PAS  K++   
Sbjct: 73  GEALAGAGLVVPPGSP--APPAVTATTWLVADLDTGEVLGACGAHVPGTPASTQKLLLAA 130

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
            +   L  K + + T+  +     +   S + L     ++ E   L L+ +S ND +   
Sbjct: 131 TMLSRLDPKHVAVATRADLDIEPGS---SAVGLLVGGRYSVETLWLGLLLQSGNDAANML 187

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
               +GS +     M+ +A+++G   T     SGL    Q T+A D   L ++ R  F  
Sbjct: 188 ARLGAGSAQAGVAEMNEQARRLGAGQTHAVTPSGLDGPGQFTSAYD---LALIARACF-- 242

Query: 208 YYKYFSIRKFRYRNRI--------------ITNHNKLLNKMHNIDGIKTGYT 245
                + R++    R               I N N+L+ +     G KTG+T
Sbjct: 243 --ADAAFRRYALTERTQIPAQPALKKGGFQIQNENQLIYRYPGALGGKTGFT 292


>gi|184154585|ref|YP_001842925.1| D-alanyl-D-alanine [Lactobacillus fermentum IFO 3956]
 gi|183225929|dbj|BAG26445.1| D-alanyl-D-alanine [Lactobacillus fermentum IFO 3956]
          Length = 411

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 105/240 (43%), Gaps = 27/240 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-- 111
           ++I ID    Q+   K    +   AS++K++T+ +I + +++ KL  NT++ V+K  A  
Sbjct: 40  AAIAIDATTGQILYAKNANTKLAIASISKIITVGVIEQEIKAGKLSWNTKVKVTKEEAKL 99

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           ++N   S + L     +T ++   A + +SA+  +         S   F   M    KK 
Sbjct: 100 SENTEYSNITLTAGKSYTVKELTEAAMIKSADAAAITLSRATGDSTASFVKKMQAFVKKA 159

Query: 170 GMQNTIYKNASGLHD---------------KNQITTARDQAILGILLRKNFPQYYKYFSI 214
           G+ +    N  GL +               +N++T A D A +   L KN+P       +
Sbjct: 160 GVTDAKLYNQVGLTNSQMGSYGLKGVAKNAENEMT-ATDVAKIAQYLIKNYPSLLNITKL 218

Query: 215 RKFRYRNRIITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                    +T  NK+L    +      IDG+KTG +  +G   V++  Y+   I+ VV+
Sbjct: 219 TSTTIDGTTVTTINKMLAGQSDAPTQVKIDGLKTGTSDKAGACFVSTGTYQGHRIITVVL 278


>gi|325681262|ref|ZP_08160792.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus albus 8]
 gi|324107184|gb|EGC01470.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus albus 8]
          Length = 468

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 108/249 (43%), Gaps = 28/249 (11%)

Query: 54  YSSIVIDVNKN---QMTGFKQDEPRYPASLTKMMTLYIIFE-------YLQSKKLHLNTQ 103
           YS  V  +N +   ++     D+   PASLTK+MT  ++ +        L++KK+   T+
Sbjct: 47  YSECVYMINMDTGEEIVDINSDKEVPPASLTKLMTAVVMLDELGGDEDALKAKKMSAGTE 106

Query: 104 I--PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
               +  T A+    + Y     Y      + A +  SA + S      + G+  +F  +
Sbjct: 107 AFDELYGTGASTADIQPYESVSAY----DLLAANLIPSACEASNIIAVNVGGNIPRFVDM 162

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK-----YFSIR- 215
           M+ K  ++G+++T +  A GL  +   ++A+D A +      N+P + +     ++++  
Sbjct: 163 MNEKVTELGLKHTHFSCAHGLFTQQNFSSAKDIAKICEYALDNYPVFKELVNTTFYTMEP 222

Query: 216 -KFRYRNRIITNHNKLLNKMHN-----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
             F      +T+ + ++N+  +       GIKTG T  +G    +         + V +G
Sbjct: 223 TDFHPEGTSLTSTDFMINEYTDYYYSYCRGIKTGTTEAAGRCFASYATCDGATYLTVTLG 282

Query: 270 MPTSQERDQ 278
            P  ++ + 
Sbjct: 283 APMEKQPED 291


>gi|171466626|gb|ACB46501.1| D-ala, D-ala carboxypeptidase [Actinomadura kijaniata]
          Length = 309

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 102/240 (42%), Gaps = 28/240 (11%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           S ++AK   S++++DV   ++   +     R   S+TK+MT Y++      K  +L+ +I
Sbjct: 38  SGVYAK---SALLLDVGAKKVRWSRSPHTKRRIGSITKVMTAYVVI-----KSGNLDRKI 89

Query: 105 PVSK--------TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
            V +          A  + + L + ++   T  Q + AL+  S  D +    +      K
Sbjct: 90  TVQRKHVDYLRGNGAGGSSAGLVVGDR--LTVRQLLRALMLPSGCDAAYVLADAYGPGWK 147

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQI--TTARDQAILGILLRKNFPQYYKYFSI 214
            F   M+  A+ + M NT Y N  G+  K     +TA DQ  L     K   ++      
Sbjct: 148 GFVAKMNKTARGLKMTNTKYANFDGIDWKGATMYSTAYDQTRLAAAAMK-LKEFRSVVGT 206

Query: 215 RKFRYRNRI------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           R +R            TN N LL K   + G+KTG+T  +G + +   +     +V +V+
Sbjct: 207 RSYRVPPTSTTHIYNWTNTNALLGKYKGMTGVKTGFTNMAGASFMFGAKRGGRELVGIVL 266


>gi|297537475|ref|YP_003673244.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylotenera
           sp. 301]
 gi|297256822|gb|ADI28667.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylotenera
           sp. 301]
          Length = 343

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 96/238 (40%), Gaps = 43/238 (18%)

Query: 64  NQMTG----FKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           NQ+TG     K      P AS+TK+MT  ++          L+  +P+       +    
Sbjct: 99  NQLTGEIIYAKNTNQSTPIASVTKLMTAMVM----------LDAHLPMDDLLFIGDEDVD 148

Query: 119 YLKE-------KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           YLK         T  T  + +   +  S N  ++A      G    F + M+ KA+ +GM
Sbjct: 149 YLKRTHSRLNVGTQLTRGELLQLALMSSENRAASALARNYPGGIGAFMVAMNRKAEVLGM 208

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-----------FRYR 220
           ++T + +A+GL D N ++TA D       L K     Y Y  IR+           +   
Sbjct: 209 KSTRFYDATGL-DSNNVSTAED-------LVKMVNAAYHYPEIRQVTTTASQEITLYGRE 260

Query: 221 NRI-ITNHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           N I   N N L+     + G+ KTG+   +G  +V        P++ V++     Q R
Sbjct: 261 NPINFVNTNSLVRGSDWVIGLSKTGFINEAGRCLVMQAEISGQPMIIVLLDSAGKQSR 318


>gi|118444189|ref|YP_877702.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT]
 gi|118134645|gb|ABK61689.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT]
          Length = 443

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 112/243 (46%), Gaps = 29/243 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDE--PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S+IVID    ++   K  +  P YPAS TK++T  ++ E  +   +   T+  + +   T
Sbjct: 36  SAIVIDAKTGEVIYAKNADASPMYPASTTKLLTALLLAENKKPTDMLTYTEGSIKQPEYT 95

Query: 113 -QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++  K  LK     + +  +  L+  SAND+++   + + G+ + FA +M++K K++G+
Sbjct: 96  LRSFLKGKLKVGDTMSADDAMKGLLLHSANDIASMIADNVGGNTENFAKMMNDKVKQLGL 155

Query: 172 QNTIYKNASGLHD--KNQITTARDQAILGILLRKN-FPQYYKYFSIRKFRYRNRIIT--- 225
           +NT +   +GL     +  T+A D +I+G     N + +        K    N I+    
Sbjct: 156 KNTHFVTPNGLDSGISDHYTSAYDLSIIGKAAYSNEWIRNTMNLKKSKVELSNGILGYPQ 215

Query: 226 NHNKL---------LNKMHNID-----------GIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           N NKL         L+ + NI            G KTG+T  +G  +V      +  ++ 
Sbjct: 216 NRNKLVGTVLDSKFLSTIGNISKNIPESNAVCVGGKTGFTTKAGRCLVAMFNKDNRVLIG 275

Query: 266 VVM 268
           VVM
Sbjct: 276 VVM 278


>gi|291452581|ref|ZP_06591971.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces albus J1074]
 gi|291355530|gb|EFE82432.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces albus J1074]
          Length = 292

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 89/216 (41%), Gaps = 22/216 (10%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYFT 127
           D  R  AS TK M + ++   L +K ++L+ ++ V +T     A    S   L+     T
Sbjct: 43  DTKRQMASTTKTMAVAVV---LDTKGVNLDKKVTVKQTYRDYVAKNGASTADLRTGDKLT 99

Query: 128 TEQGILALITRSANDVSTAFGE-FISGSE-----KKFAILMSNKAKKIGMQNTIYKNASG 181
             Q +   +  S  D + A  + F SGS      K F   M+ KAK +GM NT + +  G
Sbjct: 100 VRQLLYGTMLPSGCDAAYALADTFGSGSTVSARTKSFISKMNAKAKSLGMTNTKFDSFDG 159

Query: 182 LHDK-NQITTARDQAILGILLRKN--FPQYYKYFSIRK------FRYRNRIITNHNKLLN 232
           +    N  +T RD A L     KN  F    K  S ++         R     N NKLL 
Sbjct: 160 ISKAGNNYSTPRDLAKLARHAMKNSTFKTVVKAASTKQKATAKGGGTRTYTWYNTNKLLG 219

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 G KTG    +G  ++ S       +V V++
Sbjct: 220 SYKGATGAKTGTGTAAGPCLIFSATKNGKSLVGVIL 255


>gi|307729203|ref|YP_003906427.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. CCGE1003]
 gi|307583738|gb|ADN57136.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. CCGE1003]
          Length = 393

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 104/252 (41%), Gaps = 43/252 (17%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N  +    K      P AS+TK+MT  ++     
Sbjct: 122 VGQAFGLHETPDALMLRSSVAYVVDQNTGEPLFDKNSRAVVPIASITKLMTAMVV----- 176

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLY-------LKEKTYFTTEQGILALITRSANDVSTAF 147
                L+++ P++      +  + Y       L   +  + E  +   +  S N  + A 
Sbjct: 177 -----LDSKEPMTDQLEVTDEDRDYEKNTGSRLSVGSVLSREDMLHIALMASENRAAAAL 231

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
             +  G    F   M+ KA+++GM +T ++N +GL  +N +++ARD       L K    
Sbjct: 232 SRYYPGGRPAFLAAMNAKARQLGMTDTHFENPTGLTSQN-VSSARD-------LVKMVNA 283

Query: 208 YYKYFSIRKFRY----------RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSL 256
            Y+Y  IR+F            R     + N L+ N   +I   KTG+   +G  +V   
Sbjct: 284 AYQYPLIRRFSTDHSYEVYTGKRTLAYNSTNALVRNPTWDIGLQKTGFINEAGECLVMQA 343

Query: 257 RYKDDPIVAVVM 268
                P+V V++
Sbjct: 344 NIHGRPMVLVLL 355


>gi|62184714|ref|YP_219499.1| putative D-alanyl-d-alanine carboxypeptidase [Chlamydophila abortus
           S26/3]
 gi|62147781|emb|CAH63526.1| putative D-alanyl-d-alanine carboxypeptidase [Chlamydophila abortus
           S26/3]
          Length = 433

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 16/174 (9%)

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           AL+  SAND + A     SGS  +F   ++   +++G  +T + N  GLH  +  TTA D
Sbjct: 132 ALLICSANDAANALAIACSGSVAEFMKQLNQFLRELGCDHTHFNNPHGLHHPDHYTTAGD 191

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY--------RNRIITNHNKLLNKMHN-----IDGI 240
              L  ++R+   +      IR   Y          RI+   NKL+            G 
Sbjct: 192 ---LIRIMREGLKEPLFRQVIRTTNYTMAPTNLSEERILHLTNKLILPGSTYYYPPALGG 248

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
           KTG T+++G N+V + +     I+ +  G     E  +  + L      ++ L+
Sbjct: 249 KTGTTKDAGRNLVFAAKKHGRSIITIAAGYSAMSELYEDVIALCEGVFNEQPLR 302


>gi|149928524|ref|ZP_01916755.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Limnobacter
           sp. MED105]
 gi|149822763|gb|EDM82019.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Limnobacter
           sp. MED105]
          Length = 278

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 98/215 (45%), Gaps = 32/215 (14%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-----PSKLYLKEKTYFTTEQGI 132
           AS+TK+MT+ +  E      L+L+  I ++    T++      ++  LK  + FT  + I
Sbjct: 56  ASITKIMTVVVTLE----AGLNLDEVITIT----TEDIDYYKNTRSRLKPGSEFTRRELI 107

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
              +  S N  ++A G    G        M+ +A  + M NT +   +GL  +N+ ++A 
Sbjct: 108 HLALMASENRAASALGRSYPGGLAACVAEMNRRAASLRMFNTNFAETTGLSVENK-SSAN 166

Query: 193 DQAILGILLRKNFPQYYKY-----FSIRK------FRYRNRIITNHNKLLNKMHNIDGIK 241
           D A + +L  + FP   ++     FS++       FR  NR+I N      K  +I   K
Sbjct: 167 DLARM-VLHAQRFPLIRQFSTDPQFSVQSGKGQLNFRNTNRLIKN------KEWDIQVQK 219

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           TG+   +G  +V   +  D  +V V++    SQ R
Sbjct: 220 TGFINEAGRCLVMKAKVGDRNLVIVLLDALGSQAR 254


>gi|295102720|emb|CBL00265.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
           L2-6]
          Length = 451

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 7/157 (4%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPAS-LTKMMTLYIIFEYLQSKKLHLN 101
           S+  E+ AK  Y   +++ + N +   K    + PA  LTK MT+ ++     + +L   
Sbjct: 29  SLFYEVQAKSAY---IVNTDTNIIVYDKDSSRQVPAGGLTKYMTIALLLTNY-ADQLDNT 84

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAI 160
            Q+P + +    N     ++    FT  + + A++ R+AN+ +      +SG +   +  
Sbjct: 85  FQMPFAISDYVHNSDNADMRSNETFTYREAVYAMLLRNANEAAMGLAYSLSGGDLAGWVS 144

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            M+  +++IG   + + +A GL D   +TTA D  ++
Sbjct: 145 QMNTLSQRIGTTGSTWTDACGL-DSGNVTTAVDMYLI 180


>gi|238794079|ref|ZP_04637696.1| D-alanyl-D-alanine endopeptidase [Yersinia intermedia ATCC 29909]
 gi|238726584|gb|EEQ18121.1| D-alanyl-D-alanine endopeptidase [Yersinia intermedia ATCC 29909]
          Length = 311

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 101/225 (44%), Gaps = 19/225 (8%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N++      DE    AS+TK+MT  ++ +     KL L+  I V     T+
Sbjct: 46  SAMVVDLQTNKVIYANNADEVVPIASITKLMTAMVVLD----AKLPLDEIISVD-IHQTK 100

Query: 114 NPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               ++  ++  +  + +  +L  +  S N  + +      G    F   M+ KAK +GM
Sbjct: 101 EMKGVFSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNVKAKSLGM 160

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS----IRKFRYRNRII--- 224
             T Y   +GL   N ++TARD   L ++  K +P   +  +    +  FR  N  +   
Sbjct: 161 TKTRYVEPTGLSIDN-VSTARDLTKL-LMATKQYPLIGQLSTTTEKMATFRDPNYTLPFR 218

Query: 225 -TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            TNH  + N   NI   KTG+T  +G  +       + P+  VV+
Sbjct: 219 NTNH-LVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPVALVVL 262


>gi|288941902|ref|YP_003444142.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Allochromatium
           vinosum DSM 180]
 gi|288897274|gb|ADC63110.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Allochromatium
           vinosum DSM 180]
          Length = 353

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 108/238 (45%), Gaps = 25/238 (10%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           A  LH+    S++++D   N +        R  AS+TK+MT  ++ +   S K  +   +
Sbjct: 100 ALNLHS---VSAMIVDERGNVLYSKNARAVRPIASITKLMTAMVVLDTGVSLKTPIRI-V 155

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF-ISGSEKKFAILMS 163
              +     + S+L + + T  +  + I+  I  S N  + A G     G   +F   M+
Sbjct: 156 EDDRDRLKNSRSRLRIND-TVLSRREMIMVAIMSSDNRAAHALGRTTFRGGTPEFIQAMN 214

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY-----FSIRKF- 217
            KA+ +GM+NT + ++SGL  +NQ +TA D   + +    N+P  ++       ++R F 
Sbjct: 215 RKARALGMRNTRFVDSSGLDPRNQ-STAEDLVKM-VRAASNYPLLHEITALGQMTLRPFS 272

Query: 218 -----RYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
                +YR     N N L+ +    ++  KTG+   +G  +V   R  +  +  V +G
Sbjct: 273 DGTALQYR-----NTNPLVRSPEWTVEVSKTGFINEAGRCLVMRARIDNRSLYMVFLG 325


>gi|239980721|ref|ZP_04703245.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces albus J1074]
          Length = 313

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 89/216 (41%), Gaps = 22/216 (10%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYFT 127
           D  R  AS TK M + ++   L +K ++L+ ++ V +T     A    S   L+     T
Sbjct: 64  DTKRQMASTTKTMAVAVV---LDTKGVNLDKKVTVKQTYRDYVAKNGASTADLRTGDKLT 120

Query: 128 TEQGILALITRSANDVSTAFGE-FISGSE-----KKFAILMSNKAKKIGMQNTIYKNASG 181
             Q +   +  S  D + A  + F SGS      K F   M+ KAK +GM NT + +  G
Sbjct: 121 VRQLLYGTMLPSGCDAAYALADTFGSGSTVSARTKSFISKMNAKAKSLGMTNTKFDSFDG 180

Query: 182 LHDK-NQITTARDQAILGILLRKN--FPQYYKYFSIRK------FRYRNRIITNHNKLLN 232
           +    N  +T RD A L     KN  F    K  S ++         R     N NKLL 
Sbjct: 181 ISKAGNNYSTPRDLAKLARHAMKNSTFKTVVKAASTKQKATAKGGGTRTYTWYNTNKLLG 240

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 G KTG    +G  ++ S       +V V++
Sbjct: 241 SYKGATGAKTGTGTAAGPCLIFSATKNGKSLVGVIL 276


>gi|229489552|ref|ZP_04383415.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus erythropolis
           SK121]
 gi|229323649|gb|EEN89407.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus erythropolis
           SK121]
          Length = 429

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 96/232 (41%), Gaps = 22/232 (9%)

Query: 33  KILFLSIIMISMASELHAKPKYSSIVI-DVNKNQMTGFKQDEPRY-PASLTKMMTLYIIF 90
           K+    +++   A  L A    S  V+ D    ++   K    RY PAS  KM+   +  
Sbjct: 86  KLGECGVVLPDGAPPLPADIAASGWVLADAETGEVLAAKDPHGRYRPASTIKMLLALVAL 145

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           +     +L L+T+I  +   A    S + + +   +T  Q +  L+  S ND + A    
Sbjct: 146 D-----ELDLDTEITATAEDADAEGSAVGIGKGGKYTNRQLMQGLVMASGNDAAHALARQ 200

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL-----------GI 199
           + G     +  M+  A ++G  +T     SGL      +++ D A++           G+
Sbjct: 201 LGGDAAAVS-KMNALAAELGALDTRTATPSGLDGPGMSSSSYDLAVIFHTALQNPTFAGL 259

Query: 200 LLRK--NFPQYYKYFSIRKFRYRNRI-ITNHNKLLNKMHNIDGIKTGYTRNS 248
           +  +   FP + K  +I   + R    + N N+LL       G KTG+T ++
Sbjct: 260 IHTETVEFPGFPKDPTIPDDQDRPGFTLANDNQLLYNYDGALGGKTGFTDDA 311


>gi|17987197|ref|NP_539831.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase
           fraction C) [Brucella melitensis bv. 1 str. 16M]
 gi|17982867|gb|AAL52095.1| penicillin-binding protein 6 (d-alanyl-d-alanine carboxypeptidase
           fraction c) [Brucella melitensis bv. 1 str. 16M]
          Length = 182

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 35/51 (68%)

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           +DGIKTGYT  SG+N+V+S    +  +V VV+G  ++ +RD +  +L+T F
Sbjct: 1   MDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQMAKLLTRF 51


>gi|227514221|ref|ZP_03944270.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus fermentum
           ATCC 14931]
 gi|227087417|gb|EEI22729.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus fermentum
           ATCC 14931]
          Length = 431

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 105/240 (43%), Gaps = 27/240 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-- 111
           ++I ID    Q+   K    +   AS++K++T+ +I + +++ KL  NT++ V+K  A  
Sbjct: 60  AAIAIDATTGQVLYAKNANTKLAIASISKIITVGVIEQEIKAGKLSWNTKVKVTKEEAKL 119

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           ++N   S + L     +T ++   A + +SA+  +         S   F   M    KK 
Sbjct: 120 SENTEYSNITLTAGKSYTVKELTEAAMIKSADAAAITLSRATGDSTASFVKKMQAFVKKA 179

Query: 170 GMQNTIYKNASGLHD---------------KNQITTARDQAILGILLRKNFPQYYKYFSI 214
           G+ +    N  GL +               +N++T A D A +   L KN+P       +
Sbjct: 180 GVTDAKLYNQVGLTNSQMGSYGLKGVAKNAENEMT-ATDVAKIAQYLIKNYPSLLNITKL 238

Query: 215 RKFRYRNRIITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                    +T  NK+L    +      IDG+KTG +  +G   V++  Y+   I+ VV+
Sbjct: 239 TSTTIDGTTVTTINKMLPGQSDAPSQVKIDGLKTGTSDKAGACFVSTGTYQGHRIITVVL 298


>gi|183981214|ref|YP_001849505.1| penicillin-binding protein DacC [Mycobacterium marinum M]
 gi|183174540|gb|ACC39650.1| penicillin-binding protein DacC [Mycobacterium marinum M]
          Length = 415

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 24/224 (10%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++   +   +    R+ PAS+ K++   +       K+L+ N  +P +   +    
Sbjct: 108 LVGDLDSGAIIAARDPHARHRPASIIKVLVAMVSI-----KELNQNKAVPGTNDDSAAEG 162

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE---KKFAILMSNKAKKIGMQ 172
           +K+ +     +T  Q +  L+  S ND + A    + G +   +K  +L    A K+G +
Sbjct: 163 TKVGVNAGGMYTVNQLLHGLLMHSGNDAAHALAIQLGGMQTALEKINML----AAKLGGR 218

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYRNRI------I 224
           +T     SGL      T+A D   +G+  R  +  P +    + R F +          +
Sbjct: 219 DTRVATPSGLDGPGMSTSAYD---IGLFYRYAWQNPIFADIVATRTFDFPGHGEHPGYEL 275

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            N N LL       G KTGYT ++G   V +  +    + AV++
Sbjct: 276 ENDNHLLYNYPGALGGKTGYTDDAGQTFVGAANHNGRRLFAVLL 319


>gi|254298329|ref|ZP_04965781.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 406e]
 gi|157808378|gb|EDO85548.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 406e]
          Length = 454

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 111/244 (45%), Gaps = 50/244 (20%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +  +++I+ N N++           AS+TK+MT  +           L+T+ P+S+    
Sbjct: 223 RTGTVLIERNANRVMPI--------ASVTKLMTSMVA----------LDTRAPMSR---- 260

Query: 113 QNPSKLYLKEKTY--FTTEQ-GILALITR----------SANDVSTAFGEFISGSEKKFA 159
             P ++  +++ Y  FT  +  + ++++R          S N  + A      G    F 
Sbjct: 261 --PLRVSAQDRDYEKFTGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFV 318

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--- 216
             M+ KA+ +GM+   + NA+GL  +N ++TARD + L +     +P+  K FS      
Sbjct: 319 AAMNRKARTLGMKRMHFVNATGLSPRN-VSTARDLSRL-VAAASRYPR-IKTFSTATSKT 375

Query: 217 -FRYRNRIITNHNKLLNKMHNIDGI--KTGYTRNSGFNIVTSLRY--KDDPIVAVVMGMP 271
            F  R ++   ++  L +  +   +  KTG+   +G  +V  LRY  +  P+  V++G P
Sbjct: 376 VFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVV--LRYAVRGRPVDIVLLGAP 433

Query: 272 TSQE 275
              +
Sbjct: 434 GPHD 437


>gi|238028296|ref|YP_002912527.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           glumae BGR1]
 gi|237877490|gb|ACR29823.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           glumae BGR1]
          Length = 376

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 32/168 (19%)

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           +AL++ S N  + A      G    F   M+ KA+ +GM NT + NA+GL  +N ++TAR
Sbjct: 215 IALMS-SENRAAAALSRDYPGGRPAFIAAMNRKARMLGMTNTRFVNATGLSPQN-VSTAR 272

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH------NIDGI------ 240
           D A L            +Y +IR F       T+H ++++         N + +      
Sbjct: 273 DLARL-------LSAAARYPAIRTFS------TDHAQVVHPGRGQLSYVNSNALVRGGDT 319

Query: 241 -----KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
                KTG+   +G  +V   R    P+  V++  P  ++    A+ +
Sbjct: 320 RIRLQKTGFINEAGHCLVIRYRIGARPVDVVLLDAPGPRDHVADAIRI 367


>gi|330444090|ref|YP_004377076.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila pecorum E58]
 gi|328807200|gb|AEB41373.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila pecorum E58]
          Length = 429

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 10/146 (6%)

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           AL+  SAND +        GS  K    ++    ++G ++T + N  GLH  N  TTARD
Sbjct: 128 ALLLSSANDAANVLAVACCGSVAKCMEQINLFLSELGCKHTHFNNPHGLHHPNHYTTARD 187

Query: 194 QAIL--GILLRKNFPQYYK---YFSIRKFRYRNRIITNHNKLL--NKMHNID---GIKTG 243
            A +    L    F Q  K   Y          R +T  NKL+    M+      G KTG
Sbjct: 188 LATIMHHALQETKFQQVIKTTHYTMAATNLSAERSLTTTNKLMLPRSMYYYPAALGGKTG 247

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMG 269
            T+++G N+V + +  +  I+ V  G
Sbjct: 248 TTKSAGKNLVMAAQKNNRKIITVTTG 273


>gi|50954852|ref|YP_062140.1| D-alanyl-D-alanine endopeptidase [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951334|gb|AAT89035.1| D-alanyl-D-alanine endopeptidase [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 394

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 88/216 (40%), Gaps = 17/216 (7%)

Query: 52  PKYSSIVIDV-NKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP---- 105
           P Y S VI   +    T F   +   P AS+TK +T  ++   L  K L  + Q P    
Sbjct: 46  PGYGSAVIAAPDYPGATAFDGSDASLPIASVTKAITALVV---LDKKPLSGSEQGPEISF 102

Query: 106 ------VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
                 +      +  S   +K  T  T ++ + A++  SAN+ + +   +  GS   + 
Sbjct: 103 TQKDVDIWNQVVGEGGSWAPVKAGTSMTEKEALTAMLLPSANNYAISLANWAFGSTGAYV 162

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
              ++   K G   T   +  GL D   ++T +D   +G L+  + P      S +    
Sbjct: 163 SAANDWLGKKGFSGTKITSPDGL-DPGNVSTTKDLIGIGKLVLDS-PALSSIVSKKTATL 220

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
                 ++   L  +  +DGIKTG T  +GF ++ S
Sbjct: 221 PGAGDQDNTNSLLGVEGVDGIKTGNTDEAGFCLLFS 256


>gi|309782592|ref|ZP_07677315.1| D-alanyl-D-alanine carboxypeptidase family protein [Ralstonia sp.
           5_7_47FAA]
 gi|308918683|gb|EFP64357.1| D-alanyl-D-alanine carboxypeptidase family protein [Ralstonia sp.
           5_7_47FAA]
          Length = 396

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 33/215 (15%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++V+D N  ++   K      P AS+TK+MT  ++ +  Q          P+ +     +
Sbjct: 128 ALVMDQNNGEVLFQKNSSAVLPIASITKLMTALVVTDAHQ----------PMDELLEITD 177

Query: 115 PSKLY-------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
             + Y       L+  T  T E  +L  +  S N  ++A G    G    F   M+ KA+
Sbjct: 178 EDRDYERNTGSRLRFGTMLTREDLLLLALMSSENRAASALGRNYPGGRPAFVAAMNRKAR 237

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGI------LLRK--NFPQYYKYFSIRKFRY 219
           ++GM +T Y +++GL   N +++A+D A + +      L+R+    P++    + R   Y
Sbjct: 238 ELGMNDTHYVDSNGLSSSN-VSSAQDLAKIVMAAYKVPLIRQFTTTPEHTVSANGRTLHY 296

Query: 220 RNRIITNHNKLLNKMHNIDGI-KTGYTRNSGFNIV 253
                 N N+L+       G+ KTG+   +G  +V
Sbjct: 297 -----VNTNRLVRGGEWDIGLQKTGFINEAGRCLV 326


>gi|126433845|ref|YP_001069536.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. JLS]
 gi|126233645|gb|ABN97045.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. JLS]
          Length = 410

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 96/220 (43%), Gaps = 16/220 (7%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++  ++   +    R+ PAS+ K++   I  + L  K+L+L   +P +        
Sbjct: 105 LVADMDTGEVIAARDPHGRHRPASVIKVL---IAIQSL--KELNLAKAVPGTPEDGAAEG 159

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK-AKKIGMQNT 174
           + + +     +T    +  L+  S ND + A    + G +   A+L  N+ A K+G ++T
Sbjct: 160 TSVGVDVGGLYTVNDLLHGLLMYSGNDAAHALARQLGGMDT--ALLKLNQLAGKLGGRDT 217

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR------IITNHN 228
                SGL      T+A D A+      +N P + +  + R + +  R       I N  
Sbjct: 218 RVATPSGLDGPGMSTSAYDVALFYRYAWRN-PTFTEIVATRTYDFPGRDGNPPYPIENDV 276

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KLL       G KTG+T ++G   V         +VAV++
Sbjct: 277 KLLYNYPGALGGKTGFTDDAGQTFVGGAERDGRRLVAVLL 316


>gi|238855155|ref|ZP_04645477.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
           269-3]
 gi|260665532|ref|ZP_05866378.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus jensenii
           SJ-7A-US]
 gi|282932568|ref|ZP_06337990.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
           208-1]
 gi|313473146|ref|ZP_07813630.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus jensenii 1153]
 gi|238832236|gb|EEQ24551.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
           269-3]
 gi|239528609|gb|EEQ67610.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus jensenii 1153]
 gi|260560653|gb|EEX26631.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus jensenii
           SJ-7A-US]
 gi|281303316|gb|EFA95496.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
           208-1]
          Length = 422

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 111/245 (45%), Gaps = 31/245 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKT 109
           ++I ID    ++   K      P AS++K++T+Y+  + +++ KL  N ++     + K 
Sbjct: 47  AAITIDQKTGEVLYAKNAAKALPIASMSKLITIYLTLQAIKNGKLSWNQKLTPTKNIVKL 106

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-----------KKF 158
           +   + S + L+EK  +T +Q   A +  SAN       + + GS+           KK+
Sbjct: 107 SNNSDYSNVPLQEKHQYTVKQLYEASLIESANGAVMMLAQAVYGSQENAVNQMRTLLKKW 166

Query: 159 AILMSNKAKKIGMQNTIYKN----ASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
            I  +      G++N    +     +G + +N++       I+  LL  ++P+      +
Sbjct: 167 QINGAQIYTTCGLKNGEVGSDAYPGAGKNVENEVPAVGVAKIVDHLLT-DYPEVLSTSKL 225

Query: 215 RKFRYRNRI----ITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
            +  +++      + N N +L  +      + +DG+KTG +  +G     +L+YK   ++
Sbjct: 226 AELDFKDGSTVTKMKNWNWMLKGLSQYDSEYPLDGLKTGTSEKAGACFAGTLKYKGRRLI 285

Query: 265 AVVMG 269
            +VMG
Sbjct: 286 TIVMG 290


>gi|170694729|ref|ZP_02885880.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           graminis C4D1M]
 gi|170140360|gb|EDT08537.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           graminis C4D1M]
          Length = 394

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 103/252 (40%), Gaps = 43/252 (17%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N  +    K      P AS+TK+MT  ++     
Sbjct: 123 VGQAFGLHETPDALMLRSSVAYVVDQNTGESLFDKNSRAVVPIASITKLMTAMVV----- 177

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLY-------LKEKTYFTTEQGILALITRSANDVSTAF 147
                L+++ P++      +  + Y       L   +  + E  +   +  S N  + A 
Sbjct: 178 -----LDSKEPMTDQLEVTDEDRDYEKNTGSRLSVGSVLSREDMLHIALMASENRAAAAL 232

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
             +  G    F   M+ KA+++GM +T ++N +GL  +N +++ARD       L K    
Sbjct: 233 SRYYPGGRPAFLAAMNAKARQLGMTDTHFENPTGLTSQN-VSSARD-------LVKMVNA 284

Query: 208 YYKYFSIRKFRY----------RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSL 256
            Y+Y  IR+F            R     + N L+ N    I   KTG+   +G  +V   
Sbjct: 285 AYQYPLIRRFSTDRSYEVYTGKRTLAYNSTNALVRNPTWEIGLQKTGFINEAGECLVMQA 344

Query: 257 RYKDDPIVAVVM 268
                P+V V++
Sbjct: 345 NIHGRPMVLVLL 356


>gi|187929017|ref|YP_001899504.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ralstonia
           pickettii 12J]
 gi|187725907|gb|ACD27072.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ralstonia
           pickettii 12J]
          Length = 396

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 33/215 (15%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++V+D N  ++   K      P AS+TK+MT  ++ +  Q          P+ +     +
Sbjct: 128 ALVMDQNNGEVLFQKNSSAVLPIASITKLMTALVVTDAHQ----------PMDELLEITD 177

Query: 115 PSKLY-------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
             + Y       L+  T  T E  +L  +  S N  ++A G    G    F   M+ KA 
Sbjct: 178 EDRDYERNTGSRLRFGTMLTREDLLLLALMSSENRAASALGRNYPGGRPAFVAAMNRKAH 237

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGI------LLRK--NFPQYYKYFSIRKFRY 219
           ++GM +T Y +++GL   N +++A+D A + I      L+R+    P++    + R   Y
Sbjct: 238 ELGMNDTHYVDSNGLSSSN-VSSAQDLAKIVIAAYKVPLIRQFTTTPEHTVSANGRTLHY 296

Query: 220 RNRIITNHNKLLNKMHNIDGI-KTGYTRNSGFNIV 253
                 N N+L+       G+ KTG+   +G  +V
Sbjct: 297 -----VNTNRLVRGGEWDIGLQKTGFINEAGRCLV 326


>gi|241663205|ref|YP_002981565.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ralstonia
           pickettii 12D]
 gi|240865232|gb|ACS62893.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ralstonia
           pickettii 12D]
          Length = 379

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 26/170 (15%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++V+D N  ++   K      P AS+TK+MT  ++ +  Q          P+ +     +
Sbjct: 111 ALVMDQNNGEVLFQKNSSAVLPIASITKLMTALVVTDAHQ----------PMDELLEITD 160

Query: 115 PSKLY-------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
             + Y       L+  T  T E  +L  +  S N  ++A G    G    F   M+ KA+
Sbjct: 161 EDRDYERNTGSRLRFGTMLTREDLLLLALMSSENRAASALGRNYPGGRPAFVAAMNRKAR 220

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           ++GM +T Y +++GL   N +++A+D       L K     YK   IR+F
Sbjct: 221 ELGMNDTHYVDSNGLSSSN-VSSAQD-------LAKIVMAAYKVPLIRQF 262


>gi|266625856|ref|ZP_06118791.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
 gi|288862244|gb|EFC94542.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
          Length = 239

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 18/151 (11%)

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK--NFPQYYKYFSIR 215
           FA LM+ KAK++G   + + N SGL+D +  TTA D A++    R   N+P+  +    R
Sbjct: 1   FAKLMNKKAKELGCTGSNFVNPSGLNDPDHYTTAYDMALIA---RSALNYPEIVEIMGTR 57

Query: 216 KFRY-------RNRIITNHNKLLNKMHN-----IDGIKTGYTRNSGFNIVTSLRYKDDPI 263
            ++          + I+  +K+L K  +     + G KTG+T  +   +VT  +  D  +
Sbjct: 58  VYKIPPSKKAPEGQTISPGHKMLKKNDSAYDPRVFGGKTGFTSLADNTLVTYAKKDDMTL 117

Query: 264 VAVVM-GMPTSQERDQKALELITSFLEKKTL 293
           ++V++ G  T     +K L+   S  E K L
Sbjct: 118 ISVILNGHQTHYTDTKKLLDFGFSQFESKKL 148


>gi|330808569|ref|YP_004353031.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
           carboxypeptidase) [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376677|gb|AEA68027.1| putative serine-type D-Ala-D-Ala carboxypeptidase
           (D-alanyl-D-alanine carboxypeptidase) [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 312

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 108/229 (47%), Gaps = 27/229 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+  +++      +   P AS+TK+MT  I+ +  Q+   +++  I     A T 
Sbjct: 44  SAMLLDLQTDKVVYSSNPDVVVPIASVTKLMTGLIVLDAKQNLDEYISITI-----ANTP 98

Query: 114 NPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               ++  +K  +  +    +L  +  S N  + +      G    F   M+ KAK +GM
Sbjct: 99  EMKGVFSRVKLNSELSRRDVLLIALMSSENRAAASLAHHYPGGYAAFIAAMNAKAKALGM 158

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FR-------YR 220
            +T Y   +GL   N ++TARD   L I  RK +P   +  + ++    FR       +R
Sbjct: 159 TSTHYVEPTGLSIHN-VSTARDLTKLLIAARK-YPLLSELSTTKEKTVTFRKPVYSLGFR 216

Query: 221 NRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N   T+H  L++K + +I   KTG+T  +G  +V   +  + P+  V++
Sbjct: 217 N---TDH--LIHKANWDIQLTKTGFTNEAGHCLVLVTKMGNRPMALVIL 260


>gi|160943813|ref|ZP_02091044.1| hypothetical protein FAEPRAM212_01311 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444987|gb|EDP21990.1| hypothetical protein FAEPRAM212_01311 [Faecalibacterium prausnitzii
           M21/2]
          Length = 443

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 93/207 (44%), Gaps = 33/207 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSK----KLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           DE  +PAS+TK+MTL +  E  Q      KL + T   V   A T + S + L+E     
Sbjct: 53  DEELHPASITKVMTLGLACEKAQGDWDDVKLTV-THEDVYSLAGT-DSSHIALREGEEVP 110

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAI-LMSNKAKKIGMQNTIYKNASGLHDKN 186
               + A    SAND +    E+  G      +  M+ + +++G+ +T + N  G+ D++
Sbjct: 111 LVDALYATQMASANDGANLLAEYFGGGTIADGVAAMNAQVEELGLAHTHFSNPHGISDED 170

Query: 187 QITTARDQA-ILGILLRKNFPQYYKYFS---------------IRKFRYRNRIITNHNKL 230
             T+  D A IL   L++  P + + F+                R F  +++I     ++
Sbjct: 171 HYTSCYDMAQILRWALQQ--PGFEELFTRNEMYTMQPTNIQPVTRYFSQQDKI-----RI 223

Query: 231 LNKMHNID---GIKTGYTRNSGFNIVT 254
            +  ++ID   G K GYT  + ++ V 
Sbjct: 224 GSSRYHIDSVLGSKLGYTNTARYSYVC 250


>gi|167578731|ref|ZP_02371605.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis TXDOH]
          Length = 349

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 28/190 (14%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY---LKEKTYFTTEQGILA 134
           AS+TK+MT  ++ +     K  L+   P+  T   ++  K     L   +  + +  +  
Sbjct: 123 ASVTKLMTAMVVLD----SKAPLDE--PIEVTDDDRDLDKFTGSRLAIGSTLSRDDMLHI 176

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A   +  G  + F   M+ KA+ +GM +T ++N +GL  K+ ++TARD 
Sbjct: 177 ALMASENRAAAALSRYYPGGREAFVAAMNQKARSLGMVDTYFENPTGL-SKHNVSTARD- 234

Query: 195 AILGILLRKNFPQYYKYFSIRKFR----------YRNRIITNHNKLLNKMHNIDGI-KTG 243
                 L K     Y+Y  IR++            R     + N LL+      GI KTG
Sbjct: 235 ------LVKMVEAAYQYPLIREYSTDLKYDVDTGLRTLYYHSTNILLHDDAWDIGIQKTG 288

Query: 244 YTRNSGFNIV 253
           Y + SG  +V
Sbjct: 289 YIKESGICLV 298


>gi|256380453|ref|YP_003104113.1| Serine-type D-Ala-D-Ala carboxypeptidase [Actinosynnema mirum DSM
           43827]
 gi|255924756|gb|ACU40267.1| Serine-type D-Ala-D-Ala carboxypeptidase [Actinosynnema mirum DSM
           43827]
          Length = 669

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 83/178 (46%), Gaps = 14/178 (7%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+ K     ++   + +K+L L++Q+   +    Q  + + LK    +T EQ + +L+
Sbjct: 108 PASVIK-----VLLAMVAAKELPLDSQMTAIEEDTEQECTCIGLKAGNTYTVEQLLQSLV 162

Query: 137 TRSANDVSTAFGEFISGSEKKFAIL-MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
             S NDV+ A    + G     AI  M+  A ++G ++T     SGL      T+A D A
Sbjct: 163 MASGNDVANALARRLGG--LPSAIRKMNALATELGARDTRAITPSGLDAPGTSTSAYDVA 220

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYR-----NRIITNHNKLLNKMHNIDGIKTGYTRNS 248
           ++       +P + +  + ++  +       + + N N+L+       G KTG+T ++
Sbjct: 221 LI-FRAAMKYPDFARAIATQRIEFPAEEGGTKPVINDNRLMTSYAGALGGKTGFTDDA 277


>gi|313668773|ref|YP_004049057.1| D-alanyl-D-alanine-endopeptidase [Neisseria lactamica ST-640]
 gi|309378137|emb|CBX23227.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313006235|emb|CBN87697.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria lactamica
           020-06]
          Length = 312

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 11/161 (6%)

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD----- 193
           S N  + A G    G    F   M+ KA+ +GM  + +   +GL+  N ++TA+D     
Sbjct: 156 SENRATHALGRTYPGGMGAFVAAMNQKAQSLGMYGSRFYEPTGLNFHN-VSTAKDLNLMV 214

Query: 194 -QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFN 251
             A+   L+R N    Y     +  +   +   N N L+ +    I+  KTGY R +G +
Sbjct: 215 NAAVRYPLIRANSTSNYASVQTKNGQQNYK---NSNALIREGRWRIELQKTGYIREAGRS 271

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +V     ++ P+  V++  PTS  R   A ++ +  L++ +
Sbjct: 272 MVVRANIQNQPVTIVLLNSPTSATRVNDARKIESWMLQQHS 312


>gi|302549283|ref|ZP_07301625.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces viridochromogenes
           DSM 40736]
 gi|302466901|gb|EFL29994.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces viridochromogenes
           DSM 40736]
          Length = 412

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 15/142 (10%)

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND      E + G  +  A  M  KA+ +G  +T   +  G     Q+++A D A+ G
Sbjct: 181 SGNDAVHVLAE-LGGGWRTTARRMQAKARSLGALDTRVVSPDGYDTPGQVSSAFDLAVFG 239

Query: 199 -ILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLLNKMHNID------GIKTGYTR 246
            + LR   P + +Y +  + R+      +  I N N+LL+    +       GIK GYT 
Sbjct: 240 RVGLRD--PAFAQYCATVEARFPAGGGWSYPIRNTNRLLSGAPGVKPYRGLIGIKNGYTT 297

Query: 247 NSGFNIVTSLRYKDDPIVAVVM 268
           ++G  +V + R     +V  VM
Sbjct: 298 HAGNTLVAAARRDGRTLVVTVM 319


>gi|256371452|ref|YP_003109276.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008036|gb|ACU53603.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 416

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 89/215 (41%), Gaps = 33/215 (15%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----------VSKTA 110
           V   ++  +    P+  AS+ KMMT  +    ++   L L  Q P          +  T 
Sbjct: 82  VGVGRIGTYGPTTPQTIASVAKMMTALLT---IRDHPLSLGQQGPSITITPEDYQIYLTD 138

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             QN S + +      +  Q + AL+  SA++++T    + +GSE  F   M+++AK +G
Sbjct: 139 KAQNDSVMAVAPGEQLSEYQALEALLIPSADNMATVLATWDAGSESAFVAQMNHEAKVLG 198

Query: 171 MQNTIYKNASGL------HDKNQITTAR---DQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           + +T Y + SGL      +  +Q+  AR      +L  ++ K  PQ      +    Y  
Sbjct: 199 LTDTHYGDPSGLSAATYSNASSQLRVARLVMANPVLASIVSK--PQ--ATLPVAGVVYNV 254

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
                H       H I G+KTG      F +  ++
Sbjct: 255 NGEVTH-------HGIIGVKTGSILTGNFAMACAV 282


>gi|261400432|ref|ZP_05986557.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           lactamica ATCC 23970]
 gi|269209880|gb|EEZ76335.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           lactamica ATCC 23970]
          Length = 312

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 11/161 (6%)

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD----- 193
           S N  + A G    G    F   M+ KA+ +GM  + +   +GL+  N ++TA+D     
Sbjct: 156 SENRATHALGRTYPGGMGAFVAAMNQKAQSLGMYGSRFYEPTGLNFHN-VSTAKDLNLMV 214

Query: 194 -QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFN 251
             A+   L+R N    Y     +  +   +   N N L+ +    I+  KTGY R +G +
Sbjct: 215 NAAVRYPLIRANSTSNYASVQTKNGQQNYK---NSNALIREGRWRIELQKTGYIREAGRS 271

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +V     ++ P+  V++  PTS  R   A ++ +  L++ +
Sbjct: 272 MVVRANIQNQPVTIVLLNSPTSATRVNDARKIESWMLQQHS 312


>gi|251792511|ref|YP_003007237.1| DacC protein [Aggregatibacter aphrophilus NJ8700]
 gi|247533904|gb|ACS97150.1| DacC protein [Aggregatibacter aphrophilus NJ8700]
          Length = 302

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 90/192 (46%), Gaps = 32/192 (16%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-------EKTYFTTEQ 130
           AS+TK+MT  +  E+ ++ +           TA+  N    Y+K       + T     +
Sbjct: 54  ASVTKLMTANVFLEHNKNPRC----------TASITNEDYDYIKGTHTKLPKYTPIACRE 103

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            + A++  S N  + A       + ++F   M+ KAK +GM++T + ++SGL + N +++
Sbjct: 104 LLKAMLVHSDNYAAHALSRSAGMTRQQFIKKMNEKAKHLGMRSTRFSDSSGLSNSN-VSS 162

Query: 191 ARDQAILG--------ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIK 241
           A D   L         I    N    Y    I+  + RN  + N NKL+ ++M +    K
Sbjct: 163 AMDLVKLAKYSLAKPEIKALSNLSTAY----IQAGK-RNIFVKNTNKLVRDEMFSAAINK 217

Query: 242 TGYTRNSGFNIV 253
           TGY R SG+N+V
Sbjct: 218 TGYIRESGYNLV 229


>gi|108806608|ref|YP_650524.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Antiqua]
 gi|167399990|ref|ZP_02305508.1| penicillin-binding protein 6 (D-alanyl-D-alaninecarboxypeptidase
           fraction C) (DD-peptidase) (DD-carboxypeptidase) (PBP-6)
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|108778521|gb|ABG12579.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Antiqua]
 gi|167050698|gb|EDR62106.1| penicillin-binding protein 6 (D-alanyl-D-alaninecarboxypeptidase
           fraction C) (DD-peptidase) (DD-carboxypeptidase) (PBP-6)
           [Yersinia pestis biovar Antiqua str. UG05-0454]
          Length = 183

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP--IVAVVMGMPTSQERDQKALELIT 285
           +L N   N+DG+KTGYT  +G+N+V S    D P  +++VV+G P+ + R  ++ +L+T
Sbjct: 6   QLWNSSLNVDGMKTGYTNGAGYNLVASA--TDGPMRLISVVLGAPSDKVRFSESEKLLT 62


>gi|167616867|ref|ZP_02385498.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis Bt4]
 gi|257140788|ref|ZP_05589050.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis E264]
          Length = 349

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 28/190 (14%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL---YLKEKTYFTTEQGILA 134
           AS+TK+MT  ++ +     K  L+   P+  T   ++  K     L   +  + +  +  
Sbjct: 123 ASVTKLMTAMVVLD----SKAPLDE--PIEVTDDDRDLDKFTGSRLAIGSTLSRDDMLHI 176

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A   +  G  + F   M+ KA+ +GM +T ++N +GL  K+ ++TARD 
Sbjct: 177 ALMASENRAAAALSRYYPGGREAFVAAMNRKARSLGMVDTYFENPTGL-SKHNVSTARD- 234

Query: 195 AILGILLRKNFPQYYKYFSIRKFR----------YRNRIITNHNKLLNKMHNIDGI-KTG 243
                 L K     Y+Y  IR++            R     + N LL+      GI KTG
Sbjct: 235 ------LVKMVEAAYQYPLIREYSTDLKYDVDTGLRTLYYHSTNILLHDDAWDIGIQKTG 288

Query: 244 YTRNSGFNIV 253
           Y + SG  +V
Sbjct: 289 YIKESGICLV 298


>gi|88856162|ref|ZP_01130822.1| D-alanyl-D-alanine endopeptidase [marine actinobacterium PHSC20C1]
 gi|88814481|gb|EAR24343.1| D-alanyl-D-alanine endopeptidase [marine actinobacterium PHSC20C1]
          Length = 408

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 93/224 (41%), Gaps = 39/224 (17%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +EP   AS+TK++T  ++   L +K L ++   P   T     P      +  Y+ T+Q 
Sbjct: 83  EEPLPIASITKVITSLVV---LDAKPLAVDEAGP---TITFGQP------DLDYYYTQQA 130

Query: 132 ILALIT-------------------RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              L+                     SAN+ + +   +  GSEK F    +   K+ G++
Sbjct: 131 QFGLVWPVFDGQQLSQREVMNVVLLASANNYAQSLAHWAFGSEKAFTAAAAQWLKEQGLE 190

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-RIITNHNKLL 231
            T    ASG+ + NQ +TA D   L  L  +N P   +  +           ++N N+LL
Sbjct: 191 QTTLTEASGIQETNQ-STAEDLTELARLAIEN-PVIAEIVATPSTEVPGLGTVSNRNQLL 248

Query: 232 NKMHNIDGIKTGYTRNSG----FNIVTSLRYKDDPIVAVVMGMP 271
             +  +DGIKTG   +      F+    +  +    V VV+G P
Sbjct: 249 G-IDGVDGIKTGTLEDDWACLLFSADVVIGGEKKTFVGVVLGGP 291


>gi|108798187|ref|YP_638384.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. MCS]
 gi|119867283|ref|YP_937235.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. KMS]
 gi|108768606|gb|ABG07328.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. MCS]
 gi|119693372|gb|ABL90445.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. KMS]
          Length = 410

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 96/220 (43%), Gaps = 16/220 (7%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++  ++   +    R+ PAS+ K++   I  + L  K+L+L   +P +        
Sbjct: 105 LVADMDTGEVIAARDPHGRHRPASVIKVL---IAIQSL--KELNLAKAVPGTPEDGAAEG 159

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK-AKKIGMQNT 174
           + + +     +T    +  L+  S ND + A    + G +   A+L  N+ A K+G ++T
Sbjct: 160 TSVGVDVGGLYTVNDLLHGLLMYSGNDAAHALARQLGGMDT--ALLKLNQLAGKLGGRDT 217

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR------IITNHN 228
                SGL      T+A D A+      +N P + +  + R + +  R       I N  
Sbjct: 218 RVATPSGLDGPGMSTSAYDIALFYRYAWRN-PTFTEIVATRTYDFPGRDGNPPYPIENDV 276

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           KLL       G KTG+T ++G   V         +VAV++
Sbjct: 277 KLLYNYPGALGGKTGFTDDAGQTFVGGAERDGRRLVAVLL 316


>gi|21225333|ref|NP_631112.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces coelicolor A3(2)]
 gi|9716157|emb|CAC01548.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           coelicolor A3(2)]
          Length = 413

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 12/129 (9%)

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG--ILLRKNFPQY 208
           ++G     A  M  +A+ +G ++T  ++  G     Q+++A D A+ G   L R +F +Y
Sbjct: 191 LTGGWSATAARMQAEARALGARDTHVRSPDGYDAPGQVSSAYDLAVFGREGLRRPDFARY 250

Query: 209 YKYFSIRKFRYRNRI---ITNHNKLLNKMHNID------GIKTGYTRNSGFNIVTSLRYK 259
                   F  R+     I N N+LL     +       G+K GYT N+G  ++ + R  
Sbjct: 251 CAKVDA-MFPGRDGSSYGIMNTNRLLTGADGVQPYPGLIGVKNGYTSNAGNTLIAAARRD 309

Query: 260 DDPIVAVVM 268
              +V  VM
Sbjct: 310 GRTLVVTVM 318


>gi|145496166|ref|XP_001434074.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124401197|emb|CAK66677.1| unnamed protein product [Paramecium tetraurelia]
          Length = 496

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 108/273 (39%), Gaps = 54/273 (19%)

Query: 64  NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN-TQIPVSKTAATQNPSKLYLKE 122
           N+  G+++ +    AS+TK+MT Y    YL+   +     +I +   A   + +  +L  
Sbjct: 229 NKQVGWQEFQKGEVASITKIMTCYTTLTYLKECNIEPEQIKIKIPGHAECIDGTSAFLNA 288

Query: 123 KTYFTTEQGILALITRSANDVSTAFG------------------EFISGS---------- 154
               T +Q + AL+  S ND +   G                   ++ G+          
Sbjct: 289 GGILTIKQLLFALMLPSGNDAALVLGFTIAYLMILQKTEIYQYNRYLKGAIIDIEPQIER 348

Query: 155 -----EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD-----------QAILG 198
                +  F   M+  A  I M+NT Y +  GL+D+  ++   D           +  L 
Sbjct: 349 NKKLLKHTFLDQMNKHANSIKMENTNYSSVHGLNDEKNVSCPHDISKLIEKCIQLEVFLE 408

Query: 199 ILLRKNFPQYYKYFSIRK---FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           I+  K F  +       K   ++++N      NKLL K   + G+KTG T N+G      
Sbjct: 409 IITTKIFKTHALTDKGSKSTFYKWKNT-----NKLLKKSGWM-GVKTGVTPNAGPCFTGY 462

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            + ++   + VV+   +  +R + A  L+ S L
Sbjct: 463 YKNENLEAIIVVLNCSSMNQRFRDAEVLLVSAL 495


>gi|311896449|dbj|BAJ28857.1| putative peptidase S11 family protein [Kitasatospora setae KM-6054]
          Length = 371

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 79/209 (37%), Gaps = 20/209 (9%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S +V D    Q +  F       PAS  KM+    +     +  +H  T   +    A  
Sbjct: 41  SWVVADAGSGQVLAAFNAHAELPPASTLKMLFAVTVLPRFPASDVHRVTWSELQGMGAGS 100

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S + +KE   +  E     +   S ND          G  K  A  M  +A ++  ++
Sbjct: 101 --SLVGIKEDLDYKVEDLWRGVFLSSGNDAVHVLANMNGGVAKTVAD-MQARADRLRARD 157

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYRNRI-------- 223
           T   +  G     Q+T+A D   L +  R     P++  Y + R  ++   +        
Sbjct: 158 THVVSPDGYDMDGQVTSAYD---LTLFARAGLRDPEFRGYCATRWAQFPGAVDKKTGQRG 214

Query: 224 ---ITNHNKLLNKMHNIDGIKTGYTRNSG 249
              I N ++LL K   + G+K GYT N+G
Sbjct: 215 SFGIANTDRLLGKYPGLIGVKNGYTTNAG 243


>gi|240169097|ref|ZP_04747756.1| penicillin-binding protein DacC [Mycobacterium kansasii ATCC 12478]
          Length = 408

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 88/211 (41%), Gaps = 24/211 (11%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++   +   +    R+ PAS+ K++            +L+LN  +  +   A    
Sbjct: 101 LVADLDSGAVIAARDPHGRHRPASIIKVLVAMAAI-----NELNLNKSVAGTDDDAAAEG 155

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE---KKFAILMSNKAKKIGMQ 172
           +K+ +     +T  Q +  L+  S ND + A    + G +   +K  +L    A K+G +
Sbjct: 156 TKVGVDAGGTYTVNQLLHGLLMHSGNDAAHALARQLGGMQMALEKINVL----AAKLGGR 211

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYRNRI------I 224
           +T     SGL      T+A D   +G+  R  +  P +    + R + +          +
Sbjct: 212 DTRVATPSGLDGPGMSTSAYD---IGLFYRYAWRNPTFADIVATRSYDFPGHGDHPGYEL 268

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
            N N+LL       G KTGYT ++G   V +
Sbjct: 269 ENDNQLLYHYPGALGGKTGYTDDAGQTFVGA 299


>gi|315445088|ref|YP_004077967.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1]
 gi|315263391|gb|ADU00133.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1]
          Length = 297

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 90/207 (43%), Gaps = 24/207 (11%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
            P  + ++ D++   +   +Q+  R+ PAS  K++   ++ +     +L L+  + V+  
Sbjct: 46  GPAQAWVLADMDTGAVLAARQENGRFAPASTIKILLAMVVLD-----ELPLDATV-VANE 99

Query: 110 AATQNPSKLY-LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
           A T+       +   T +TT Q +  L+  S ND +      + G +   A  M+ KA  
Sbjct: 100 ADTRVECNCAGVAPGTTYTTRQLLEGLLLVSGNDAANTLATMLGGRDAAVA-KMNAKAAG 158

Query: 169 IGMQNTIYKNASGLHDK--NQITTARDQAILGILLRKNFPQYYKYF--------SIRKFR 218
           +G   T   + SG+     +  +T RD   L +L R      Y  F        ++   +
Sbjct: 159 LGAHGTRAGSPSGIDGPGIDIWSTPRD---LAVLFRAAM--AYPVFAQITAQPTAVFPTK 213

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYT 245
             + ++ N +++L++     G KTGYT
Sbjct: 214 SGDVVLVNQDEMLHRYPGTFGGKTGYT 240


>gi|145510915|ref|XP_001441385.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408635|emb|CAK73988.1| unnamed protein product [Paramecium tetraurelia]
          Length = 334

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 92/218 (42%), Gaps = 26/218 (11%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT-------AATQ 113
           ++   +T F   +    ASLTK+MT Y+  + ++  KL+L   + VS         A   
Sbjct: 79  IDGQHLTNFNSKKRVQVASLTKLMTCYVAIQLIRDLKLNLYQIVYVSYDVYILTFKAVQI 138

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK-------------FAI 160
           + +  +L      T    +  L+  S ND +    E +S   K              F  
Sbjct: 139 SGTSAFLHPYDRITLYDLLHGLMLPSGNDAANVIAENLSQCVKDPVSNIALHYRIQPFIS 198

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
           LM+  A ++ M +T + N  GL +    + A D AIL   +  N P   +  + ++ +  
Sbjct: 199 LMNQYALQLEMNDTQFYNPHGLSNDQSYSCAEDLAILCKQI-INDPMLMEIVNKKEHQAT 257

Query: 221 NRIIT----NHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
           N++I     N N++L +     G KTG+T  +G  + T
Sbjct: 258 NKLINLTWKNTNRML-EYEGYCGFKTGFTNKAGPCLAT 294


>gi|148653230|ref|YP_001280323.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Psychrobacter
           sp. PRwf-1]
 gi|148572314|gb|ABQ94373.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Psychrobacter
           sp. PRwf-1]
          Length = 344

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 109/250 (43%), Gaps = 20/250 (8%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL--QSKKLHLNTQIPVSKTAATQ 113
           IV+DV   +    K  D  R  AS+TK+MT  ++ +      +++ L+ +  V    A+ 
Sbjct: 102 IVLDVETGKPLYQKNADVARPIASITKIMTAMVVLDAGLDMREEIKLDPEDFVGPKRASS 161

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
                 LK        + +L  + +S N  + +      G    F   M+ KA+ +GM +
Sbjct: 162 R-----LKSGDRMNRAELLLMALMKSENPAAKSLARNYPGGYDAFMRAMNAKARSLGMTS 216

Query: 174 TIYKNASGLHDKNQITTARDQAIL-------GILLRKNFPQYYKYFSIRKFRYRNRI--I 224
             + + +GL DK  + +  D A +        ++ R +  + Y ++ +  +   NR    
Sbjct: 217 AFFGDPTGL-DKRNVASPVDLAKMVQAAGQYEVIRRFSTTKNYDFY-VANYSAGNRPYPA 274

Query: 225 TNHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            N +KL+       GI KTG+   +G  +V   R  + P + V++G   S  R   A  +
Sbjct: 275 NNTSKLVRSGTYPIGISKTGFINEAGQCVVMETRVNNKPAIIVILGADNSNTRWNDAETI 334

Query: 284 ITSFLEKKTL 293
           +T+   ++T+
Sbjct: 335 LTNLASRRTI 344


>gi|83717156|ref|YP_440158.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis E264]
 gi|83650981|gb|ABC35045.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis E264]
          Length = 373

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 28/190 (14%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY---LKEKTYFTTEQGILA 134
           AS+TK+MT  ++ +     K  L+   P+  T   ++  K     L   +  + +  +  
Sbjct: 147 ASVTKLMTAMVVLD----SKAPLDE--PIEVTDDDRDLDKFTGSRLAIGSTLSRDDMLHI 200

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A   +  G  + F   M+ KA+ +GM +T ++N +GL  K+ ++TARD 
Sbjct: 201 ALMASENRAAAALSRYYPGGREAFVAAMNRKARSLGMVDTYFENPTGL-SKHNVSTARD- 258

Query: 195 AILGILLRKNFPQYYKYFSIRKFR----------YRNRIITNHNKLLNKMHNIDGI-KTG 243
                 L K     Y+Y  IR++            R     + N LL+      GI KTG
Sbjct: 259 ------LVKMVEAAYQYPLIREYSTDLKYDVDTGLRTLYYHSTNILLHDDAWDIGIQKTG 312

Query: 244 YTRNSGFNIV 253
           Y + SG  +V
Sbjct: 313 YIKESGICLV 322


>gi|317490469|ref|ZP_07948950.1| D-alanyl-D-alanine carboxypeptidase [Eggerthella sp. 1_3_56FAA]
 gi|325831447|ref|ZP_08164701.1| serine-type D-Ala-D-Ala carboxypeptidase [Eggerthella sp. HGA1]
 gi|316910407|gb|EFV32035.1| D-alanyl-D-alanine carboxypeptidase [Eggerthella sp. 1_3_56FAA]
 gi|325486701|gb|EGC89149.1| serine-type D-Ala-D-Ala carboxypeptidase [Eggerthella sp. HGA1]
          Length = 467

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 8/118 (6%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           P   AS+TK+MT  +  + ++   L L++ + VS  AA    S   L+E      +  + 
Sbjct: 87  PTQIASITKIMTGVVALDAVEDGLLSLDSPVTVSAAAAAVGESSAGLQEGDVMNLDAALK 146

Query: 134 ALITRSANDVSTAFGEFI--------SGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
           AL+  S ND + A  E I        S  E  F   M+ KA+++G  +T+Y N  GL 
Sbjct: 147 ALLVPSGNDAAVAIAETIGALMEPGTSDPEAVFVNAMNAKAQELGCTDTVYDNPHGLD 204


>gi|257791331|ref|YP_003181937.1| Serine-type D-Ala-D-Ala carboxypeptidase [Eggerthella lenta DSM
           2243]
 gi|257475228|gb|ACV55548.1| Serine-type D-Ala-D-Ala carboxypeptidase [Eggerthella lenta DSM
           2243]
          Length = 467

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 8/118 (6%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           P   AS+TK+MT  +  + ++   L L++ + VS  AA    S   L+E      +  + 
Sbjct: 87  PTQIASITKIMTGVVALDAVEDGLLSLDSPVTVSAAAAAVGESSAGLQEGDVMNLDAALK 146

Query: 134 ALITRSANDVSTAFGEFI--------SGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
           AL+  S ND + A  E I        S  E  F   M+ KA+++G  +T+Y N  GL 
Sbjct: 147 ALLVPSGNDAAVAIAETIGALMEPGTSDPEAVFVNAMNAKAQELGCTDTVYDNPHGLD 204


>gi|223041814|ref|ZP_03612004.1| penicillin-binding protein 7 precursor [Actinobacillus minor 202]
 gi|223017383|gb|EEF15804.1| penicillin-binding protein 7 precursor [Actinobacillus minor 202]
          Length = 291

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 103/230 (44%), Gaps = 29/230 (12%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYL 93
           LF  + ++SMA         S +V D   +++   +      P AS+TK+MT  +  E  
Sbjct: 8   LFALLPVVSMAQ--------SYVVYDFTHDRVLESRSPNSVQPIASVTKLMTANVFLENN 59

Query: 94  QSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           Q++    N  I ++   A     +   L   T  + ++ + A++  S N  + A      
Sbjct: 60  QNR----NCAISITDEDADYIKGTSTKLPTYTPISCQELLKAMLVHSDNYAAHALSRAAG 115

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG--------ILLRKN 204
            S  +F   M+ KA+++GM++T + ++SGL   N +++  D   L         I +  N
Sbjct: 116 MSRTQFIQKMNEKARELGMRSTRFSDSSGLSSAN-VSSVMDLVKLAKYSLGKSQIQVLSN 174

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI-KTGYTRNSGFNIV 253
               Y    I   R +N  + N NKL+ +      I KTGY R SG+N+V
Sbjct: 175 MAAAY----IHAGR-KNIFVKNTNKLVREELFSAAINKTGYIRESGYNLV 219


>gi|154483287|ref|ZP_02025735.1| hypothetical protein EUBVEN_00988 [Eubacterium ventriosum ATCC
           27560]
 gi|149735797|gb|EDM51683.1| hypothetical protein EUBVEN_00988 [Eubacterium ventriosum ATCC
           27560]
          Length = 345

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 116/262 (44%), Gaps = 42/262 (16%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++I+++VN  ++   K  + + YPAS TK+MT   + + +++  + +     ++  AA  
Sbjct: 89  AAILVNVNSKEIYYEKNSDAKMYPASTTKLMTALTVLQNMKTTDI-VTIGSEINMIAA-- 145

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSAND----VSTAFGEFI--------------SGSE 155
           + SK    +    T ++ +  L+  S ND    ++ A GE I              +   
Sbjct: 146 DSSKAGFSQGQVVTVQELLEGLLISSGNDAAYVLAKAAGEAILKDNIANEGKTFTAAQCV 205

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           ++F   M+   + + ++NT + +  G    +Q T+A D + + I       + Y   +IR
Sbjct: 206 ERFVYEMNKNVRDMELENTHFMSPDGYDAADQYTSASDLSKIAI-------EAYNNETIR 258

Query: 216 KFRYR--------NRIITNHNKLLNKMHN-----IDGIKTGYTRNSGFNIVTSLRYKDDP 262
           K            N+   + N LL+K          G+KTG T  +G  +V+  +  D  
Sbjct: 259 KICGTQSEKSGTLNKTWVSTNALLDKSGQFYYQYCVGMKTGSTGLAGKCLVSVAKNGDTE 318

Query: 263 IVAVVMGMPTSQERDQKALELI 284
            ++VV+   T ++R   A +L+
Sbjct: 319 CISVVLNDSTDEQRWTDAKKLL 340


>gi|229824659|ref|ZP_04450728.1| hypothetical protein GCWU000282_02006 [Catonella morbi ATCC 51271]
 gi|229786030|gb|EEP22144.1| hypothetical protein GCWU000282_02006 [Catonella morbi ATCC 51271]
          Length = 454

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 9/122 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY---PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT-- 109
           S+I +D    Q+    Q  P       +LTK+++L II++ L  +K+HL+ ++ +S    
Sbjct: 38  SAIAVDAASGQI--LYQKNPMALLEVGNLTKLLSLLIIYDALDQEKIHLDDRVTLSDEAY 95

Query: 110 AATQN--PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
           A +QN   S + L++   ++  + + A+   SAN    A  E+ +GS+  F  LM  K +
Sbjct: 96  ALSQNYEISNVPLRQDLDYSVAELLEAVEIGSANGALLALAEYTAGSKAAFQDLMQAKVQ 155

Query: 168 KI 169
            I
Sbjct: 156 SI 157


>gi|145224758|ref|YP_001135436.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium gilvum
           PYR-GCK]
 gi|145217244|gb|ABP46648.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium gilvum
           PYR-GCK]
          Length = 313

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 90/207 (43%), Gaps = 24/207 (11%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
            P  + ++ D++   +   +Q+  R+ PAS  K++   ++ +     +L L+  + V+  
Sbjct: 62  GPAQAWVLADMDTGAVLAARQENGRFAPASTIKILLAMVVLD-----ELPLDATV-VANE 115

Query: 110 AATQNPSKLY-LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
           A T+       +   T +TT Q +  L+  S ND +      + G +   A  M+ KA  
Sbjct: 116 ADTRVECNCAGVAPGTTYTTRQLLEGLLLVSGNDAANTLATMLGGRDAAVA-KMNAKAAG 174

Query: 169 IGMQNTIYKNASGLHDK--NQITTARDQAILGILLRKNFPQYYKYF--------SIRKFR 218
           +G   T   + SG+     +  +T RD   L +L R      Y  F        ++   +
Sbjct: 175 LGAHGTRAGSPSGIDGPGIDIWSTPRD---LAVLFRAAM--AYPVFAQITAQPTAVFPTK 229

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYT 245
             + ++ N +++L++     G KTGYT
Sbjct: 230 SGDVVLVNQDEMLHRYPGTFGGKTGYT 256


>gi|289450082|ref|YP_003474721.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184629|gb|ADC91054.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 748

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 88/224 (39%), Gaps = 18/224 (8%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-LKEKTYFTT 128
           K+ E   PA++TK+ ++ + ++ L  +       IP       +  +++   K       
Sbjct: 167 KEHEKFAPATMTKLFSVLLAYDKLNQRLNEETDIIPSDVDGLAEVGARIIGFKVGESLPI 226

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
               L  +  S  D   A      G E  F   M+ KAK +GM ++ + N +GL      
Sbjct: 227 ADLFLGAVMESGADAIRALARLSYGDENDFVKAMNEKAKALGMNDSHFSNCTGLSADGDS 286

Query: 189 TTARDQAILGILLRKNFPQYYKY-----FSIRKFRYRNRIITNHNKLLNKMHN------- 236
           T+  D AI+ + L    PQ  +      ++ +K  +    I  ++ L N +         
Sbjct: 287 TSVHDMAIV-MALCATRPQLVQMLCTAGYTTQKTDFHPYGIALNSILFNDIEQAKAQSEG 345

Query: 237 ----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
               I G + G++ +  FN++T        +V V  G   +Q R
Sbjct: 346 RKVYIQGGRPGWSPDGLFNLMTFAHVGKKLLVVVSAGADQAQAR 389


>gi|257438479|ref|ZP_05614234.1| penicillin-binding protein 5 domain protein [Faecalibacterium
           prausnitzii A2-165]
 gi|257199058|gb|EEU97342.1| penicillin-binding protein 5 domain protein [Faecalibacterium
           prausnitzii A2-165]
          Length = 446

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 4/145 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPAS-LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+ +++ + N +   K  E +  A  LTK MT+ ++     + +L     +P + +    
Sbjct: 38  SAYIVNTDTNIIVYEKDSEKQVSAGGLTKYMTIALVLTNY-ADQLDSTFTMPFAISDYVH 96

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQ 172
           N     ++    FT  + + A++TR+AN+ +      +SG +   +   M+  +++IG  
Sbjct: 97  NSDNADMRSGETFTYREALYAMVTRNANEAAMGLAHELSGGDLAGWVSQMNTLSQRIGTT 156

Query: 173 NTIYKNASGLHDKNQITTARDQAIL 197
           N+ + +A GL D    TTA D  ++
Sbjct: 157 NSTWTDACGL-DSGNTTTAVDMYLI 180


>gi|226305499|ref|YP_002765459.1| D-alanyl-D-alanine carboxypeptidase [Rhodococcus erythropolis PR4]
 gi|226184616|dbj|BAH32720.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus
           erythropolis PR4]
          Length = 437

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 95/232 (40%), Gaps = 22/232 (9%)

Query: 33  KILFLSIIMISMASELHAKPKYSSIVI-DVNKNQMTGFKQDEPRY-PASLTKMMTLYIIF 90
           K+    +++   A  L A    S  V+ D    ++   K    RY PAS  KM+   +  
Sbjct: 94  KLGECGVVLPDGAPPLPADIAASGWVLADAETGEVLAAKDPHGRYRPASTIKMLLALVAL 153

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           +     +L L+T+I  +   A    S + + +   +T  Q +  L+  S ND + A    
Sbjct: 154 D-----ELDLDTEITATAEDADAEGSAVGIGKGGKYTNRQLMQGLVMASGNDAAHALARQ 208

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL-----------GI 199
           + G     +  M+  A ++G  +T     SGL      ++  D A++           G+
Sbjct: 209 LGGDAAAVS-KMNALAVELGALDTRTATPSGLDGPGMSSSPYDLAVIFHTALQNPTFAGL 267

Query: 200 LLRK--NFPQYYKYFSIRKFRYRNRI-ITNHNKLLNKMHNIDGIKTGYTRNS 248
           +  +   FP + K  +I   + R    + N N+LL       G KTG+T ++
Sbjct: 268 IHTETVEFPGFPKDPTIPDDQDRPGFTLANDNQLLYNYDGALGGKTGFTDDA 319


>gi|114562029|ref|YP_749542.1| D-alanyl-D-alanine endopeptidase [Shewanella frigidimarina NCIMB
           400]
 gi|114333322|gb|ABI70704.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Shewanella frigidimarina NCIMB 400]
          Length = 302

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 33/217 (15%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+  N++      ++P   AS+TK+M   +  +     KL L+ +I V     T 
Sbjct: 40  SAMLVDLTTNEVLYSSNPNQPVPIASVTKLMAAMVTLD----AKLALDEKISVK---ITD 92

Query: 114 NP--SKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +P    +Y  ++  +  T E  +L  +  S N  +T+      G  K F   M++KA  +
Sbjct: 93  SPVMRNIYSRVRLGSVVTRETMLLLTLMSSENRAATSLAHNYPGGFKAFVRAMNDKATAL 152

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------------- 216
           GM  T Y   +GL   N +++A D  IL +   + +P   K  S  K             
Sbjct: 153 GMSQTRYVEPTGLSPDN-VSSAND-LILLLKASQTYPLLGKLSSTTKKHVNFESPRYALD 210

Query: 217 FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
           F+  N+++  +N       NI   KTG+T  +G  +V
Sbjct: 211 FQNTNKLVFKNN------WNIALTKTGFTNKAGHCLV 241


>gi|295104040|emb|CBL01584.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 443

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 91/207 (43%), Gaps = 33/207 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSK----KLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           DE  +PAS+TK+MTL +  E  Q      KL + T   V   A T + S + L+E     
Sbjct: 53  DEELHPASITKVMTLGLACEKAQGDWDDVKLTV-THEDVYSLAGT-DSSHIALREGEEVP 110

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAI-LMSNKAKKIGMQNTIYKNASGLHDKN 186
               + A    SAND +    E+  G      +  M+ + +++G+ +T + N  G+ D +
Sbjct: 111 LVDALYATQMASANDGANLLAEYFGGGTIADGVAAMNAQVEELGLAHTHFSNPHGISDDD 170

Query: 187 QITTARDQA-ILGILLRKNFPQYYKYFS---------------IRKFRYRNRIITNHNKL 230
             T+  D A IL   L++  P +   F+                R F  +++I     ++
Sbjct: 171 HYTSCYDMAQILRWALQQ--PGFEDLFTRNEMYTMQPTNIQPVTRYFSQQDKI-----RI 223

Query: 231 LNKMHNID---GIKTGYTRNSGFNIVT 254
            +  ++ID   G K GYT  + ++ V 
Sbjct: 224 GSSRYHIDSVLGSKLGYTNTARYSYVC 250


>gi|301301086|ref|ZP_07207246.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851356|gb|EFK79080.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 129

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 5/113 (4%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI-PVSKTAAT 112
           S+I +D N  Q+    +++  YP AS++K++T YI+ + +   +L  NT++ P    A  
Sbjct: 13  SAIAVDANSGQILYETKEDEVYPVASMSKLLTAYILLDKINHHELSWNTKVKPTKVEAEI 72

Query: 113 QNPSKLY---LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + S+L    L     +T ++   A++  SAN  +      +SGS+  F  LM
Sbjct: 73  SHNSELTNVPLDSTHSYTIKELYQAMLVGSANAAAMVIARAVSGSQTDFVKLM 125


>gi|317124333|ref|YP_004098445.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Intrasporangium calvum DSM 43043]
 gi|315588421|gb|ADU47718.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Intrasporangium calvum DSM 43043]
          Length = 898

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 14/160 (8%)

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           AL+  SAND +    +   G E+  + LM+  A  +G  +T+  + SGL +  Q ++A D
Sbjct: 203 ALLLSSANDAAYLLADAAGGYEQTVS-LMNETAVGLGAHDTVAVDPSGLDEDGQHSSAYD 261

Query: 194 QAILGILLRKNFPQYYKYFSIRKFR------------YRNRIITNHNKLLNKMHNIDGIK 241
            A++G    +  P +  Y S R               YR+  I N N+LL +     GIK
Sbjct: 262 LALIGRAAMR-LPTFRSYVSKRDAAFPGGTNRATGTVYRSFQIQNINELLGRYPGAIGIK 320

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
            G T  +    + +       ++   MG  T   +D  AL
Sbjct: 321 PGRTNRAQHTFIGAATRAGRTLIVTQMGSTTGDWKDTAAL 360


>gi|224541857|ref|ZP_03682396.1| hypothetical protein CATMIT_01029 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525207|gb|EEF94312.1| hypothetical protein CATMIT_01029 [Catenibacterium mitsuokai DSM
           15897]
          Length = 294

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 101/240 (42%), Gaps = 28/240 (11%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D +  ++   K + E RYPAS  K+++  +  +Y +         I         
Sbjct: 46  SAVVMDADTGKVYYAKNEQESRYPASTIKLLSALVAIDYYKDNDALTTRNIMSLPDRVFI 105

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           + + +Y  E+  F  +  I  ++ +S+N+++    E   G    F   M+ +AKKIG   
Sbjct: 106 HTAPVYDGERIPF--KDVIHGMLLKSSNEMALTLAENYKGGYDGFIEAMNKRAKKIGCTK 163

Query: 174 TIYKNASGLH--DKNQI---TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII--TN 226
               N  GL   DK  +    + +D A++         ++YK   +RK       I  +N
Sbjct: 164 VDVSNPHGLSYADKGWLKETCSTKDMALIA-------KEFYKNKKLRKIISTESYIFESN 216

Query: 227 HNKLLNKMH-----------NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
            N+ +  +             + G KTG+T  +G  +VT  + K   I+ VV    T  E
Sbjct: 217 PNREMKNVRMTQKDSTYYDKRVIGGKTGFTNLAGRCLVTYSKVKKKTIITVVFKENTRGE 276


>gi|268608716|ref|ZP_06142443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus flavefaciens
           FD-1]
          Length = 482

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 100/242 (41%), Gaps = 44/242 (18%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAATQNPSKLYL-----KEKTYFTTEQ 130
           PASLTK++T  +   YL       +T + V S+    ++ S L L     K K Y     
Sbjct: 127 PASLTKLLTASVALHYLSP-----DTVVTVGSEQNLVRSGSSLCLIRPGHKLKLY----D 177

Query: 131 GILALITRSANDVSTAFGEFISGSEKK------------FAILMSNKAKKIGMQNTIYKN 178
            +  ++  S ND +       + + K             F  LM++ A  IGM+++ +  
Sbjct: 178 LLTGMLMASGNDAAYTVAVTTARAVKPDTAMTDAQAVSYFTELMNSYASSIGMRDSHFTT 237

Query: 179 ASGLHDKNQITTARDQAILG-----ILLRKNFPQYYK---YFSIRKFRYRNRIITNHNKL 230
             G  D +Q TT  D  +L      I   K     Y+   YF        N   TN N L
Sbjct: 238 PEGWDDASQYTTVSDLLVLANHAFSIPEIKTITGTYQKKVYF----VSGENITWTNTNAL 293

Query: 231 LNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           L+        +  GIKTG T ++G  ++ +        ++VV+G  T  +R +  L++++
Sbjct: 294 LDPNSAYYCADAIGIKTGTTASAGNCLIAAFERNGKTYLSVVVGCGTGNDRYELTLKMLS 353

Query: 286 SF 287
            F
Sbjct: 354 QF 355


>gi|269139886|ref|YP_003296587.1| D-alanyl-D-alanine endopeptidase [Edwardsiella tarda EIB202]
 gi|267985547|gb|ACY85376.1| D-alanyl-D-alanine endopeptidase [Edwardsiella tarda EIB202]
 gi|304559723|gb|ADM42387.1| Murein-DD-endopeptidase [Edwardsiella tarda FL6-60]
          Length = 309

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 92/233 (39%), Gaps = 35/233 (15%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+N +Q+      + + P AS+TK+MT  +  +      L     + + +T   +
Sbjct: 46  SAMVVDMNNHQVIYASHPDVQVPIASITKLMTAMVTLD--AHPNLDEVIAVDIHRTKELK 103

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
                 ++  +  T  Q +L  +  S N  +        G    F   M+ KA+ +GM  
Sbjct: 104 GVFS-RVRVGSELTRRQMLLLALMSSENRAAATLAHHYPGGYDAFIRAMNAKARALGMTR 162

Query: 174 TIYKNASGLHDKNQITTARD-----QAILGILLRKNF------------PQYYKYFSIRK 216
           T Y   +GL   N +++ARD     QA  G  L                P Y + F+   
Sbjct: 163 THYVEPTGL-SPNNVSSARDLVKLLQAAKGYPLIGELSTTETKSVTFAHPTYTETFN--- 218

Query: 217 FRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                    N N LL N   NI   KTG+T  +G  +         P+  VV+
Sbjct: 219 ---------NTNHLLRNDKWNIQMTKTGFTNQAGHCLAMRTVIGGRPVALVVL 262


>gi|118617619|ref|YP_905951.1| D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium ulcerans
           Agy99]
 gi|118569729|gb|ABL04480.1| D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium ulcerans
           Agy99]
          Length = 290

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 14/201 (6%)

Query: 52  PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  + IV D++  Q + G  Q+    PAS  K++   +  +     +L+LN+ +   +  
Sbjct: 40  PAQTWIVADLDTGQVLAGRDQNVTHPPASTIKVLLALVALD-----ELNLNSTVVADEAD 94

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                + + +K    +T  Q +  L+  S ND +    + + G +   A  M+ KA  +G
Sbjct: 95  THVECNCVGVKAGHTYTARQLLDGLLLVSGNDAANTLAQLLGGQDAAVA-KMNAKAAALG 153

Query: 171 MQNTIYKNASGLHDKNQ--ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR----II 224
             NT     SGL        +TA D A++      N P +    +     +        I
Sbjct: 154 AMNTHAATPSGLDGPGGSGWSTAHDLAVIFRTAMAN-PVFAHITAEPSAMFPGEDGEHPI 212

Query: 225 TNHNKLLNKMHNIDGIKTGYT 245
            N ++LL +     G KTGYT
Sbjct: 213 VNQDELLQRYPGAIGGKTGYT 233


>gi|294616051|ref|ZP_06695871.1| D, D-carboxypeptidase, putative [Enterococcus faecium E1636]
 gi|291591087|gb|EFF22776.1| D, D-carboxypeptidase, putative [Enterococcus faecium E1636]
          Length = 309

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 92/205 (44%), Gaps = 40/205 (19%)

Query: 34  ILFLSIIMISMASELHAKPKYSSI--VID---------------VNKNQM---TGFKQDE 73
           IL  + ++IS  +  +A+  Y  I  ++D               +N + M   +  K+D+
Sbjct: 18  ILMCTAVVISYVNRPYARAVYDRIKRILDKDFYDHLYLGSSFEIINLDTMDIHSYMKKDQ 77

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT---QNPSKLYLKEKTYFTTEQ 130
              PASL+K+ T+    +Y  S  L L+ QI +S TA      + S  +L+E    +   
Sbjct: 78  EELPASLSKLFTI----DYALS-VLSLDEQITISPTALDMQKADSSTAHLQEGDILSVYD 132

Query: 131 GILALITRSANDVSTAFGEFISG--------SEKKFAILMSNKAKKI---GMQNTIYKNA 179
            I A++  S ND + +   +  G         E+++   M N  + +   G ++T + +A
Sbjct: 133 IICAMVLPSGNDAAYSLAIYTGGKLDPDAKNDEERYQSFMKNLDRYLSEQGYKHTHFTDA 192

Query: 180 SGLHDKNQITTARDQAILGILLRKN 204
           +G +D N  T+A D   +   L KN
Sbjct: 193 AG-YDSNATTSAEDLTKVAAKLLKN 216


>gi|50121716|ref|YP_050883.1| D-alanyl-D-alanine endopeptidase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612242|emb|CAG75692.1| penicillin-binding protein [Pectobacterium atrosepticum SCRI1043]
          Length = 315

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 27/229 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N +      +   P AS+TK+MT  ++ +      L L+  I V   + T+
Sbjct: 45  SAMVVDLRDNHVLYSSNPDVVVPIASVTKLMTALVVLD----ANLPLDEIISV-DISQTK 99

Query: 114 NPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +Y  ++  +  +    +L  +  S N  + +      G  + F   M+ KA+ +GM
Sbjct: 100 EMKGVYSRVRLNSEISRRDMLLLALMSSENRAAASLAHHYPGGYQAFIHAMNAKARALGM 159

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-----------FRYR 220
            +T Y   +GL   N ++TARD   L ++  K +P   +  + ++             +R
Sbjct: 160 AHTRYVEPTGL-SINNVSTARDLTKL-LIASKQYPLLSQLSTTQEKTATFTHPAYSLPFR 217

Query: 221 NRIITNHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N   TNH  L+ K   +I   KTG+T  +G  +V        P+  VV+
Sbjct: 218 N---TNH--LVYKADWSIQLTKTGFTNQAGHCLVMRTVINQRPVALVVL 261


>gi|313114789|ref|ZP_07800289.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622844|gb|EFQ06299.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 451

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 10/148 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSK----KLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           +E  +PAS+TK+MTL +  E  Q      KL + T   V   A T + S + L+E     
Sbjct: 57  NEELHPASITKVMTLGLACEKAQGNWDDIKLTV-THEDVYSLAGT-DSSHIALREGEEVP 114

Query: 128 TEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
               + A +  SAND +    E++  G+       M+ + +++G+ +T + N  G+ D++
Sbjct: 115 LTDALYATMMASANDGANLLAEYVGEGTIADGVAKMNARVEELGLAHTHFANPHGISDED 174

Query: 187 QITTARDQA-ILGILLRKNFPQYYKYFS 213
             T+  D A IL   L +  P + + F+
Sbjct: 175 HYTSCYDMAQILRWALEQ--PGFEQVFT 200


>gi|291616796|ref|YP_003519538.1| PbpG [Pantoea ananatis LMG 20103]
 gi|291151826|gb|ADD76410.1| PbpG [Pantoea ananatis LMG 20103]
          Length = 315

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 101/231 (43%), Gaps = 31/231 (13%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+   + +     D  R  AS+TK+MT  ++ +  Q     +N  + V     +Q
Sbjct: 46  SALIVDLTSGKTLFSSHPDRVRPIASITKLMTAMVVLDAHQP----MNEMVTVD---ISQ 98

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    ++       +LAL++ S N  + +      G    F   M+ KA+ 
Sbjct: 99  TPEMRGVFSRVKLNSQISRRSMLMLALMS-SENRAAASLAHAYPGGYNAFIKAMNAKARA 157

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-----------F 217
           +GM +T Y   +GL  +N +++A D   L +   + +P   +  + ++            
Sbjct: 158 LGMNHTHYVEPTGLSIQN-VSSAEDLVKL-LKATREYPLLSELSTTKEETAVFTHPSYAL 215

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            +RN   TNH    N  H I   KTGYT  +G  +V     K+ P+  VV+
Sbjct: 216 PFRN---TNHLVYKNGWH-IQLTKTGYTDEAGHCLVMRTMIKNRPVALVVL 262


>gi|226330782|ref|ZP_03806300.1| hypothetical protein PROPEN_04703 [Proteus penneri ATCC 35198]
 gi|225201577|gb|EEG83931.1| hypothetical protein PROPEN_04703 [Proteus penneri ATCC 35198]
          Length = 109

 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 35/49 (71%)

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N+DG+KTG+T  +G+N+V+S    D  ++AVV+G P+ + R  ++ +L+
Sbjct: 2   NVDGVKTGHTNGAGYNLVSSATEGDMRLIAVVLGAPSDKVRFAESEKLL 50


>gi|253687929|ref|YP_003017119.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251754507|gb|ACT12583.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 315

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 103/228 (45%), Gaps = 25/228 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N +      +   P AS+TK+MT  ++ +   ++ L     + +S+T   +
Sbjct: 45  SAMVVDLRDNHILYSSNPDVVVPIASVTKLMTALVVLD--ANQPLDEIISVDISQTKEMK 102

Query: 114 NP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S++ L  +   +    +L  +  S N  + +      G  + F   M+ KA+ +GM 
Sbjct: 103 GVYSRVRLNSE--ISRRDMLLLALMSSENRAAASLAHHYPGGYQAFIRAMNAKARALGMA 160

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-----------FRYRN 221
           +T Y   +GL   N ++TARD   L ++  K +P   +  + ++             +RN
Sbjct: 161 HTRYVEPTGL-SINNVSTARDLTKL-LIASKQYPLLSQLSTTQEKTATFSHPAYSLPFRN 218

Query: 222 RIITNHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              TNH  L+ K   +I   KTG+T  +G  +V        P+  VV+
Sbjct: 219 ---TNH--LVYKADWSIQLTKTGFTNQAGHCLVMRTVINQRPVALVVL 261


>gi|268607998|ref|ZP_06141729.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus flavefaciens
           FD-1]
          Length = 172

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 4/139 (2%)

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           +AND  T   E    S ++F   M+++A  +G+++T + +  G HD  + TTA D A++ 
Sbjct: 6   NANDALTVLAEKSERSAEEFVKRMNSEAFDLGLRDTAFYSPDGYHDDREYTTAHDIAVIC 65

Query: 199 ILLRKNFPQYYKYFS-IRKFRYRNRI-ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
             L K +     +FS  R F    R  + N NKL        G K  ++ ++G+ I    
Sbjct: 66  AKLAK-YDFLAPFFSTWRDFVGEGRTELVNENKLSRTYDQHIGFKAVHSDHTGYCIAEGG 124

Query: 257 -RYKDDPIVAVVMGMPTSQ 274
              K    VAVV+G   + 
Sbjct: 125 DNGKGMRCVAVVLGAEDAD 143


>gi|240947887|ref|ZP_04752327.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Actinobacillus
           minor NM305]
 gi|240297849|gb|EER48285.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Actinobacillus
           minor NM305]
          Length = 275

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 26/197 (13%)

Query: 73  EPRYP------ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTY 125
           E R P      AS+TK+MT  +  E  Q++    N  I ++   A     +   L   T 
Sbjct: 17  ESRSPNSVQPIASVTKLMTANVFLENNQNR----NCAISITDEDADYIKGTSTKLPTYTP 72

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            + ++ + A++  S N  + A       S  +F   M+ KA+++GM++T + ++SGL   
Sbjct: 73  ISCQELLKAMLVHSDNYAAHALSRAAGMSRTQFIQKMNEKARELGMRSTRFSDSSGLSSA 132

Query: 186 NQITTARDQAILG--------ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNI 237
           N +++  D   L         I +  N    Y    I   R +N  + N NKL+ +    
Sbjct: 133 N-VSSVMDLVKLAKYSLGKSQIQILSNMAAAY----IHAGR-KNIFVKNTNKLVREELFS 186

Query: 238 DGI-KTGYTRNSGFNIV 253
             I KTGY R SG+N+V
Sbjct: 187 AAINKTGYIRESGYNLV 203


>gi|264676436|ref|YP_003276342.1| peptidase S11, D-alanyl-D-alanine [Comamonas testosteroni CNB-2]
 gi|262206948|gb|ACY31046.1| peptidase S11, D-alanyl-D-alanine [Comamonas testosteroni CNB-2]
          Length = 205

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 52/90 (57%), Gaps = 10/90 (11%)

Query: 204 NFPQYYKYFSIRKFRYRNRIITN---HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           +FP+Y  Y++ +++ Y     +N    N LL +   +DG+KTG+T  +G+ +V + + +D
Sbjct: 3   DFPEYMHYYATKQYSYPGTPASNGSNRNALLFRDPTVDGLKTGHTNAAGYCLVATAK-RD 61

Query: 261 DP------IVAVVMGMPTSQERDQKALELI 284
            P      ++++V+G  + + R  ++ +L+
Sbjct: 62  LPNVGQRRLLSIVLGTASEKARANESQKLL 91


>gi|327393222|dbj|BAK10644.1| penicillin-binding protein 7 precursor PbpG [Pantoea ananatis
           AJ13355]
          Length = 315

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 101/231 (43%), Gaps = 31/231 (13%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+   + +     D  R  AS+TK+MT  ++ +  Q     +N  + V     +Q
Sbjct: 46  SALIVDLTSGKTLFSSHPDRVRPIASITKLMTAMVVLDAHQP----MNEMVTVD---ISQ 98

Query: 114 NPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            P    +  +    ++       +LAL++ S N  + +      G    F   M+ KA+ 
Sbjct: 99  TPEMRGVFSRVKLNSQISRRSMLMLALMS-SENRAAASLAHAYPGGYNAFIKAMNAKARA 157

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-----------F 217
           +GM +T Y   +GL  +N +++A D   L +   + +P   +  + ++            
Sbjct: 158 LGMNHTHYVEPTGLSIQN-VSSAEDLVKL-LKATREYPLLGELSTTKEETAVFTHPSYAL 215

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            +RN   TNH    N  H I   KTGYT  +G  +V     K+ P+  VV+
Sbjct: 216 PFRN---TNHLVYKNGWH-IQLTKTGYTDEAGHCLVMRTMIKNRPVALVVL 262


>gi|319779426|ref|YP_004130339.1| Murein-DD-endopeptidase [Taylorella equigenitalis MCE9]
 gi|317109450|gb|ADU92196.1| Murein-DD-endopeptidase [Taylorella equigenitalis MCE9]
          Length = 389

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 96/215 (44%), Gaps = 17/215 (7%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILA 134
           AS++K+MT Y++ +  Q     L+  I +S+          S+L +   T  T ++ +L 
Sbjct: 171 ASISKLMTAYVVIKSGQP----LDEIITISEEDVDHLKGTGSRLTIG--TQLTRKEALLL 224

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A G    G  + F   M+  A+ +GM  T Y   +GL   N +++A+D 
Sbjct: 225 ALMSSENRAANALGRHYPGGLEAFVKEMNATARSLGMTRTRYVEPTGLSPMN-VSSAQDL 283

Query: 195 AILGILLRKNFPQYYKY-----FSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNS 248
           A L   + K  P  ++      +S+     + +   N N+L+ N   +I   KTGY + +
Sbjct: 284 ATLLAAVYKE-PLIHQLSTSDGYSVTTNGGKVQDYKNSNRLIRNNEWDIHISKTGYIKEA 342

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           G  IV   + K   +  V+M       R   A+ +
Sbjct: 343 GRCIVMITKIKGKDMAVVLMNAKGGTTRFSDAIRV 377


>gi|293397160|ref|ZP_06641434.1| penicillin-binding protein 7 [Serratia odorifera DSM 4582]
 gi|291420631|gb|EFE93886.1| penicillin-binding protein 7 [Serratia odorifera DSM 4582]
          Length = 307

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 104/226 (46%), Gaps = 27/226 (11%)

Query: 45  ASELHA-KPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLH 99
           A+ LHA +P+ +S   +V+D++ +++   +  +   P AS+TK+MT  +  +      L 
Sbjct: 29  ATALHATQPELASGSAMVVDMSSHKVLYARNPDEVVPIASITKLMTAMVTLD----AHLP 84

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGS 154
           L+  + V      Q P    +  +    +E       +LAL++ S N  + +      G 
Sbjct: 85  LDEMLTVD---IHQTPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGG 140

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS- 213
              F   M+ KAK +GM  T Y   +GL   N ++TARD + L +L  K +P   +  + 
Sbjct: 141 YNAFISAMNAKAKALGMTRTHYVEPTGLSIHN-VSTARDLSKL-LLATKQYPLIGQLSTT 198

Query: 214 ---IRKFRYRNRIIT--NHNKLL-NKMHNIDGIKTGYTRNSGFNIV 253
              +  F+  N  +   N N L+ N   NI   KTG+T  +G  + 
Sbjct: 199 TERMASFKDPNYTLPFRNTNHLVYNPKWNIQLTKTGFTNQAGHCLA 244


>gi|183981810|ref|YP_001850101.1| D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium marinum M]
 gi|183175136|gb|ACC40246.1| D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium marinum M]
          Length = 290

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 82/201 (40%), Gaps = 14/201 (6%)

Query: 52  PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  + IV D++  Q + G  Q+    PAS  K++   +  +     +L LN+ +   +  
Sbjct: 40  PAQTWIVADLDTGQVLAGRDQNVTHPPASTIKVLLALVALD-----ELDLNSTVVADEAD 94

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                + + +K    +T  Q +  L+  S ND +    + + G +   A  M+ KA  +G
Sbjct: 95  THVECNCVGVKAGHTYTARQLLDGLLLVSGNDAANTLAQMLGGQDAAVA-KMNAKAAALG 153

Query: 171 MQNTIYKNASGLHDKNQ--ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR----II 224
             NT     SGL        +TA D A++      N P +    +     +        I
Sbjct: 154 AMNTHAATPSGLDGPGGSGWSTAHDLAVIFRTAMAN-PVFAHITAEPSAMFPGEDGEHPI 212

Query: 225 TNHNKLLNKMHNIDGIKTGYT 245
            N ++LL +     G KTGYT
Sbjct: 213 VNQDELLQRYPGAIGGKTGYT 233


>gi|253997566|ref|YP_003049630.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylotenera
           mobilis JLW8]
 gi|253984245|gb|ACT49103.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylotenera
           mobilis JLW8]
          Length = 334

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 94/231 (40%), Gaps = 45/231 (19%)

Query: 64  NQMTG---FKQDE--PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           NQ TG   F ++   P   AS+TK+MT  ++          L+  +P+ +     +    
Sbjct: 90  NQQTGEVLFAKNTNLPTPIASVTKLMTAMVM----------LDAHLPMDELLNISDEDVD 139

Query: 119 YLKEKT----YFTT----EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           YLK  T      TT    E   LAL+  S N  ++A G    G    F   M+ KAK +G
Sbjct: 140 YLKHTTSRLSVGTTLTRGEMLQLALMA-SENRAASALGRNYPGGSYAFVKAMNQKAKLLG 198

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF------------R 218
           M  + + +++GL D N ++TA D       L K     Y Y  IR+             R
Sbjct: 199 MNASRFVDSTGL-DSNNVSTAED-------LAKMVDAAYHYAEIRQVTTLASQEITLYGR 250

Query: 219 YRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                  N N L+     +I   KTG+   +G  +V        P++ V++
Sbjct: 251 RSPLSFVNTNALVRGGKWDIGLSKTGFINEAGRCLVMQAHISGQPVIIVLL 301


>gi|169839591|ref|ZP_02872779.1| Serine-type D-Ala-D-Ala carboxypeptidase [candidate division TM7
           single-cell isolate TM7a]
          Length = 61

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 35/54 (64%)

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           +T+ N LL  +  +DG+KTGY   +G NIV +    DD ++AV++G   +++R+
Sbjct: 1   MTSTNTLLGNVQGVDGLKTGYHDAAGSNIVLTANRGDDRMIAVILGSNHAKDRN 54


>gi|91774582|ref|YP_544338.1| murein-DD-endopeptidase [Methylobacillus flagellatus KT]
 gi|91708569|gb|ABE48497.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Methylobacillus flagellatus KT]
          Length = 336

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 85/207 (41%), Gaps = 30/207 (14%)

Query: 78  ASLTKMMTLYIIFEYLQ--SKKLHLNTQ-IPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           ASLTK+MT  ++ +  Q  ++KL +  + I   K   ++ P    L            LA
Sbjct: 115 ASLTKLMTAMVVLDAQQDMNEKLRITREDIDTLKGTGSRMPIGATLTRAEMLQ-----LA 169

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           L+  S N  ++A G    G    F   M+ KA ++GM ++ + + +GL+  N ++TA D 
Sbjct: 170 LMA-SENRAASALGRHYPGGLNAFVAAMNAKALQLGMLHSRFADPTGLNSAN-VSTAED- 226

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH---------NIDGI----K 241
                 L K     Y+Y  IR            N     +H         N D +    K
Sbjct: 227 ------LVKMVRAAYQYPEIRHVSTTTAYAVPVNGARAPLHYVNSNVLVRNSDWVIGLSK 280

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           TGY   +G  +V        P++ V++
Sbjct: 281 TGYINEAGRCLVMQAEVGGQPLIIVLL 307


>gi|315634259|ref|ZP_07889546.1| serine-type D-Ala-D-Ala carboxypeptidase [Aggregatibacter segnis
           ATCC 33393]
 gi|315476849|gb|EFU67594.1| serine-type D-Ala-D-Ala carboxypeptidase [Aggregatibacter segnis
           ATCC 33393]
          Length = 292

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 96/211 (45%), Gaps = 23/211 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           S +V D   N++   +   P   R  AS+TK+MT  +  E+ +      N +   S TA 
Sbjct: 20  SYVVYDFTHNKI--LESSSPHSVRPIASVTKLMTANVFLEHNK------NARCTASITAE 71

Query: 112 TQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
             +    +   L   T  +  + + A++  S N  + A       S ++F   M++KA+ 
Sbjct: 72  DADHIKGTSTKLPRYTPISCNELLKAMLVHSDNYAAHALSRSAGMSRQQFIKKMNDKARA 131

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRI 223
           +GM +T + ++SGL + N +++  D   L      N     K  S     Y     RN  
Sbjct: 132 LGMTSTHFSDSSGLSNSN-VSSVMDLVKLAKYSLNNAE--IKRLSNISSTYIQTGKRNIF 188

Query: 224 ITNHNKLL-NKMHNIDGIKTGYTRNSGFNIV 253
           + N NKL+ ++M +    KTGY R SG+N+V
Sbjct: 189 VKNTNKLVRDEMFSAAINKTGYIRESGYNLV 219


>gi|227113033|ref|ZP_03826689.1| D-alanyl-D-alanine endopeptidase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 315

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 103/228 (45%), Gaps = 25/228 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N +      +   P AS+TK+MT  ++ +   ++ L     + +S+T   +
Sbjct: 45  SAMVVDLRDNHILYSSNPDVVVPIASVTKLMTALVVLD--ANQPLDEIISVDISQTKEMK 102

Query: 114 NP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S++ L  +   +    +L  +  S N  + +      G  + F   M+ KA+ +GM 
Sbjct: 103 GVYSRVRLNSE--ISRRDMLLLALMSSENRAAASLAHHYPGGYQAFIRAMNAKARALGMA 160

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFP---------QYYKYFSIRKFR--YRN 221
           +T Y   +GL   N ++TARD   L ++  K +P         +    FS   +   +RN
Sbjct: 161 HTRYVEPTGL-SINNVSTARDLTKL-LIASKQYPLLGQLSTTQEKTATFSHPAYSQPFRN 218

Query: 222 RIITNHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              TNH  L+ K   +I   KTG+T  +G  +V        P+  VV+
Sbjct: 219 ---TNH--LVYKADWSIQLTKTGFTNQAGHCLVMRTVINQRPVALVVL 261


>gi|120403175|ref|YP_953004.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955993|gb|ABM12998.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
           vanbaalenii PYR-1]
          Length = 278

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 87/203 (42%), Gaps = 22/203 (10%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ----SKKLHLNTQIPV 106
           P  + +V D++  ++   K     Y PAS  K++    + ++L+    ++    +T++  
Sbjct: 45  PAEAWLVADLDTGRVLASKNPYGTYAPASTIKVLLAMTVLDHLRPDNFARANESHTRVEC 104

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
           S            L+    +TT Q + A++  S ND +    + + G     A  M+ KA
Sbjct: 105 SCVG---------LQPGQAYTTAQLVAAILMVSGNDAANMLADMLGGQRVAVAA-MNRKA 154

Query: 167 KKIGMQNTIYKNASGLHDKN--QITTARDQAILGILLRK--NFPQYYKYFSIRKFRYRNR 222
             +G ++T   + SGL       +TT  D   L +++R    +P   +        +  +
Sbjct: 155 ALVGARSTRASSPSGLDGPGWESVTTPHD---LAVIMRAALKYPLIAQIMRSPSAPFPGK 211

Query: 223 IITNHNKLLNKMHNIDGIKTGYT 245
            + N N+LL++       KTG+T
Sbjct: 212 TLHNQNELLSRYPGDLAGKTGFT 234


>gi|295837711|ref|ZP_06824644.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. SPB74]
 gi|197695913|gb|EDY42846.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. SPB74]
          Length = 308

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 84/201 (41%), Gaps = 22/201 (10%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYFT 127
           D  R  AS TK+MT  ++   L +K L+L+ ++ + +        +  S   L+     T
Sbjct: 59  DTKREMASTTKVMTAAVV---LDTKGLNLDKKVTIQQAYRDYVVKKGASTADLRTGDKVT 115

Query: 128 TEQGILALITRSANDVSTAF------GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
             Q + A +  S  D + A       G+  +     F   M+ KAK + M NT Y +  G
Sbjct: 116 VRQLLYAALLPSGCDAAYALADTFGTGKTATARTADFIAKMNAKAKSLKMANTSYDSFDG 175

Query: 182 LHDKNQ-ITTARDQAILGILLRKN--FPQYYKYFSIRK------FRYRNRIITNHNKLLN 232
           +  K++  TT RD ++L     KN  F    K  S ++         R     N NKLL 
Sbjct: 176 IPTKSKNYTTPRDASLLAQHALKNSTFRTVVKAKSTKQTATASNGNTRTYTWYNTNKLLG 235

Query: 233 KMHNIDGIKTGYTRNSGFNIV 253
                 GIKTG    SG  +V
Sbjct: 236 SYDGAIGIKTGTASGSGPCLV 256


>gi|313200023|ref|YP_004038681.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Methylovorus
           sp. MP688]
 gi|312439339|gb|ADQ83445.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylovorus
           sp. MP688]
          Length = 330

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 26/205 (12%)

Query: 78  ASLTKMMTLYIIFE-YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           AS+TK+MT  ++ + +L   +L    +  V     T   S+L L   T    E   LAL+
Sbjct: 109 ASVTKLMTAMVMLDAHLPMDELLTINEADVDTLKGTS--SRLRLG-TTLTRAEMLHLALM 165

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
           + S N  ++A G    G    F   M+ KA  +GM ++ + + +GL+  N I+TA D   
Sbjct: 166 S-SENRAASALGRNYPGGLTAFIRAMNAKASMLGMAHSQFVDPTGLNSAN-ISTAED--- 220

Query: 197 LGILLRKNFPQYYKYFSIRK-----------FRYRNRI-ITNHNKLLNKMHNIDGI-KTG 243
               L K     Y+Y  IR+           +  RN I   N N L+     + G+ KTG
Sbjct: 221 ----LVKMVRAAYQYPEIRQVSTSASQEVPVYGLRNPINFVNTNVLVRNSDWVIGLSKTG 276

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVM 268
           +   +G  +V        P++ V++
Sbjct: 277 FINEAGRCLVMQAEIAGQPMIIVLL 301


>gi|253997956|ref|YP_003050019.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylovorus
           sp. SIP3-4]
 gi|253984635|gb|ACT49492.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylovorus
           sp. SIP3-4]
          Length = 330

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 26/205 (12%)

Query: 78  ASLTKMMTLYIIFE-YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           AS+TK+MT  ++ + +L   +L    +  V     T   S+L L   T    E   LAL+
Sbjct: 109 ASVTKLMTAMVMLDAHLPMDELLTINEADVDTLKGTS--SRLRLG-TTLTRAEMLHLALM 165

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
           + S N  ++A G    G    F   M+ KA  +GM ++ + + +GL+  N I+TA D   
Sbjct: 166 S-SENRAASALGRNYPGGLTAFIRAMNAKASMLGMAHSQFVDPTGLNSAN-ISTAED--- 220

Query: 197 LGILLRKNFPQYYKYFSIRK-----------FRYRNRI-ITNHNKLLNKMHNIDGI-KTG 243
               L K     Y+Y  IR+           +  RN I   N N L+     + G+ KTG
Sbjct: 221 ----LVKMVRAAYQYPEIRQVSTSASQEVPVYGLRNPINFVNTNVLVRNSDWVIGLSKTG 276

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVM 268
           +   +G  +V        P++ V++
Sbjct: 277 FINEAGRCLVMQAEIAGQPMIIVLL 301


>gi|297621737|ref|YP_003709874.1| putative D-alanyl-D-alanine carboxypeptidase [Waddlia chondrophila
           WSU 86-1044]
 gi|297377038|gb|ADI38868.1| putative D-alanyl-D-alanine carboxypeptidase [Waddlia chondrophila
           WSU 86-1044]
          Length = 426

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 85/199 (42%), Gaps = 14/199 (7%)

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           T+  S + +K+    +    +  ++  S  D S     ++ G+   F   ++   K++G 
Sbjct: 104 TRGTSHIGIKKGEELSLRDLLYGMMVASGGDASNMIALYMGGTIPVFMEELNLYLKELGC 163

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSIRK---FRYRNRIITN 226
            +T   N  GLH    ++TA D A+L     KN  F +  K    ++    + +   +  
Sbjct: 164 TSTYLMNPHGLHHPRHVSTAYDMAVLTREALKNSTFREIVKTVRCQRPETNKQKATTLIQ 223

Query: 227 HNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            N+LL K         G+KTGYT  +  N+V + +  D  ++AV M        D++ + 
Sbjct: 224 TNRLLRKGKYYYSKAIGVKTGYTSQAKNNLVAAAKDGDRTLIAVFM-----HCDDREKMF 278

Query: 283 LITSFLEKKTLKHQQTHRK 301
           L    L  K  K ++  RK
Sbjct: 279 LDAKQLFNKAFKEEKISRK 297


>gi|328480234|gb|EGF49154.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus MTCC
           5462]
          Length = 250

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 80/162 (49%), Gaps = 20/162 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGIL 133
           AS+TKM+++ ++ + ++S K+  + ++ + ++  T    ++ S + L+    ++  +   
Sbjct: 66  ASMTKMISIELVLDAIKSGKIKWDDKVTLDQSIWTISQDRDLSNVPLRRDGSYSVRELYD 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD--------- 184
           A +  SAN       + ++GS++KF   M  K K  G+ +    N +GL++         
Sbjct: 126 ASLIYSANAAMMLLAKAVAGSQEKFVNQMDAKLKSWGITDAKIVNVTGLNNSQLKDAKVP 185

Query: 185 ------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
                 +N++ +A+D A +   L K+ P+  K  SI K  +R
Sbjct: 186 GTGDNAENEM-SAKDMAQVAQHLIKDHPEVLKTTSIAKQTFR 226


>gi|289808199|ref|ZP_06538828.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 83

 Score = 45.1 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 34/48 (70%)

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           IDG+KTG+T  +GFN++ S       ++AVVMG  +S+ R+++A +L+
Sbjct: 1   IDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAKSSKGREEQARKLL 48


>gi|213160841|ref|ZP_03346551.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
          Length = 199

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           P  Y  +  ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       ++
Sbjct: 2   PNEYAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLVASATEGQMRLI 61

Query: 265 AVVMGMPTSQERDQKALELIT 285
           + VMG  T + R+ ++ +L+T
Sbjct: 62  SAVMGGRTYKGRETESKKLLT 82


>gi|186476224|ref|YP_001857694.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           phymatum STM815]
 gi|184192683|gb|ACC70648.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           phymatum STM815]
          Length = 387

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 104/246 (42%), Gaps = 31/246 (12%)

Query: 42  ISMASELHAKPKY----SSI--VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQ 94
           +  A  LH  P      SS+  V+D N ++    K      P AS+TK+MT  ++ +   
Sbjct: 117 VGTAFGLHETPDALMLRSSVAYVVDQNTSESLFDKNSRAVVPIASITKLMTAMVVLD--- 173

Query: 95  SKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K  +  QI V+      +  +   L   +  + E  +   +  S N  + A   +  G
Sbjct: 174 -SKAAMTEQIEVTDEDRDYEKNTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYFPG 232

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM +T ++N +GL  +N +++ARD       L K     Y+Y  
Sbjct: 233 GRPAFMAAMNAKAKALGMTDTHFENPTGLTSQN-VSSARD-------LVKMVNAAYQYPL 284

Query: 214 IRKFRY----------RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           IRKF            R+    + N L+ N    I   KTG+   +G  +V      D P
Sbjct: 285 IRKFSTDRSYEVYTGKRSIAYNSTNALVRNPSWEIGLQKTGFINEAGECLVMQATIHDRP 344

Query: 263 IVAVVM 268
           ++ V++
Sbjct: 345 MIMVLL 350


>gi|261822173|ref|YP_003260279.1| D-alanyl-D-alanine endopeptidase [Pectobacterium wasabiae WPP163]
 gi|261606186|gb|ACX88672.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pectobacterium
           wasabiae WPP163]
          Length = 315

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 101/229 (44%), Gaps = 27/229 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N +      +   P AS+TK+MT  ++ +      L L+  I V   + T+
Sbjct: 45  SAMVVDLRDNHILYSSNPDVVVPIASVTKLMTALVVLD----ANLPLDEIISV-DISQTK 99

Query: 114 NPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +Y  ++  +  +    +L  +  S N  + +      G  + F   M+ KA  +GM
Sbjct: 100 EMKGVYSRVRLNSEISRHDMLLLALMSSENRAAASLAHHYPGGYQAFIRAMNAKANALGM 159

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-----------FRYR 220
            +T Y   +GL   N ++TARD   L ++  K +P   +  + ++             +R
Sbjct: 160 THTRYVEPTGL-SINNVSTARDLTKL-LIASKQYPLLSQLSTTQEKTATFTHPAYSLPFR 217

Query: 221 NRIITNHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N   TNH  L+ K   +I   KTG+T  +G  +V        P+  VV+
Sbjct: 218 N---TNH--LVYKADWSIQLTKTGFTNQAGHCLVMRTVINQRPVALVVL 261


>gi|227326961|ref|ZP_03830985.1| D-alanyl-D-alanine endopeptidase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 315

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 103/228 (45%), Gaps = 25/228 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N +      +   P AS+TK+MT  ++ +   ++ L     + +S+T   +
Sbjct: 45  SAMVVDLRDNHILYSSNPDVVVPIASVTKLMTALVVLD--ANQPLDEIISVDISQTKEMK 102

Query: 114 NP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S++ L  +   +    +L  +  S N  + +      G  + F   M+ KA+ +GM 
Sbjct: 103 GVYSRVRLNSE--ISRRDMLLLALMSSENRAAASLAHHYPGGYQAFIRAMNAKARALGMA 160

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFP---------QYYKYFSIRKFR--YRN 221
           +T Y   +GL   N ++TARD   L ++  K +P         +    FS   +   +RN
Sbjct: 161 HTRYVEPTGL-SINNVSTARDLTKL-LIASKQYPLLGQLSTTQEKTATFSHPAYSQPFRN 218

Query: 222 RIITNHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              TNH  L+ K   +I   KTG+T  +G  +V        P+  VV+
Sbjct: 219 ---TNH--LVYKADWSIQLTKTGFTNQAGHCLVMRTVINQRPVALVVL 261


>gi|149377678|ref|ZP_01895414.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Marinobacter
           algicola DG893]
 gi|149358031|gb|EDM46517.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Marinobacter
           algicola DG893]
          Length = 304

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 92/215 (42%), Gaps = 29/215 (13%)

Query: 70  KQDEPRYP-ASLTKMMTLYIIFE-------YLQSKKLHLNTQIPVSKTAATQNPSKLYLK 121
           K  + R P AS+TK+MT  ++ E       +L  ++ H    IP    A T+      L+
Sbjct: 50  KNADRRVPIASITKLMTALVVMESGEPLTEWLDFRERH----IPAPANAYTRIRVSSELR 105

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
                      +AL++ S N  +        G    F   M+ KA ++GM  T + + +G
Sbjct: 106 RSDVLR-----IALMS-SENFAAHTLARHHPGGYDAFIEAMNAKAVELGMLKTTFVDPTG 159

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-------RYRNRIITNHNKLLNKM 234
           L   N+ +TA D   L +     +PQ  +Y + R F       RYR     N N L+++ 
Sbjct: 160 LSVDNR-STAADLVRL-VRAASQYPQIREYSTTRYFTAQFRQPRYR-LAFGNTNVLVHRE 216

Query: 235 HNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
               GI KTGY   +G  +V        P+V V++
Sbjct: 217 SWGVGISKTGYLSEAGRCLVMLFELDGKPLVTVLL 251


>gi|314934816|ref|ZP_07842175.1| penicillin-binding protein 4 [Staphylococcus caprae C87]
 gi|313652746|gb|EFS16509.1| penicillin-binding protein 4 [Staphylococcus caprae C87]
          Length = 388

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 23/199 (11%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGI 132
           PASLTKMMT+Y+  + ++S K+H+  +I ++   A      N S + L+    +T +  +
Sbjct: 71  PASLTKMMTMYLTLDAVKSGKIHMKDKIKITSKQAQLSQKSNLSSVPLEAGQTYTVKDIL 130

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-------- 184
                 S+N  +   G  +S S   F   M+ +AK   M++T + + +G           
Sbjct: 131 SQTALASSNAAALILGAKVSSSTSTFTDKMNQQAKTFHMKDTHFTSPAGADTELLGSSAP 190

Query: 185 ---KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM---- 234
              KNQ    +T++D  I+   + K  P+  K    +    + +   + N  L       
Sbjct: 191 QKYKNQGKTSSTSKDMNIMMYHMIKEHPEILKTTQNKSDTQKGQSFESTNLSLKGQPKYY 250

Query: 235 HNIDGIKTGYTRNSGFNIV 253
              DG+KTG T +SG+++ 
Sbjct: 251 KGTDGLKTG-TSDSGYSLA 268


>gi|300313783|ref|YP_003777875.1| D-alanyl-D-alanine carboxypeptidase [Herbaspirillum seropedicae
           SmR1]
 gi|300076568|gb|ADJ65967.1| D-alanyl-D-alanine carboxypeptidase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 385

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 94/210 (44%), Gaps = 34/210 (16%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MT  +   +L  K+L +  ++ V++           L    +  +  G+ A ++
Sbjct: 169 ASVTKLMTAIV---WLDQKQLAMGNRLEVTED---------DLDTLKFTHSRLGVGASLS 216

Query: 138 R----------SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
           R          S N  + A      G    F   M+ +A+ +GM +T ++NA+GL  +N 
Sbjct: 217 RADMLHIALMSSENRAAAALSRDYPGGRPAFIAAMNARAQALGMSHTHFENATGLSPEN- 275

Query: 188 ITTARDQAILG------ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGI 240
           ++T R+ A L        L+R +     K  +I + + +     N N+L+     N    
Sbjct: 276 VSTPRELAALVQAANRYQLIRNDSLDKQKMINIGRGQLQ---YINSNRLIRYGQVNASVQ 332

Query: 241 KTGYTRNSGFNIVTSLRYKD-DPIVAVVMG 269
           KTG+   SG N+V  +   D  P++  ++G
Sbjct: 333 KTGFINESGHNMVLRMLVHDRRPVIVTMLG 362


>gi|237786122|ref|YP_002906827.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237759034|gb|ACR18284.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 474

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 79/200 (39%), Gaps = 32/200 (16%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S ++ DV+   +   K    RY PAS+ K++      +     +L L+  +  ++  A  
Sbjct: 165 SWLIYDVDSGDVIAAKDPHGRYRPASIFKVLLAREAID-----RLPLDRVLTATQEDANM 219

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   +     +T  Q +  L+ RS ND +      + G EKK    +  +A   G Q+
Sbjct: 220 EGSHAGIGPDGKYTVRQALQGLLMRSGNDCAHLLMRALGG-EKKVLADLQKRADGSGTQD 278

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           T   + SGL      T+A D   L +L R+ F                     HNK  N+
Sbjct: 279 TRVTSYSGLDAPGLQTSAYD---LALLYREAF---------------------HNKTFNE 314

Query: 234 MHNIDGIK-TGYTRNSGFNI 252
           + N   +   GY  N GF I
Sbjct: 315 IVNTKLVDFPGYQDNPGFQI 334


>gi|298230061|ref|ZP_06963742.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae str.
           Canada MDR_19F]
          Length = 283

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 18/136 (13%)

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAI 196
           ++GSEK F  +M  K  + G+Q+    N +GL+              D+    +A D AI
Sbjct: 1   MAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYDVAI 60

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTGYTRNSGFNI 252
           +   L K +PQ  +        +    IT+ N +L  M       DG+KTG T  +G + 
Sbjct: 61  VARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESF 120

Query: 253 VTSLRYKDDPIVAVVM 268
           V +   K   ++ VV+
Sbjct: 121 VGTTVEKGMRVITVVL 136


>gi|74316101|ref|YP_313841.1| D-alanyl-D-alanine carboxypeptidase-like protein [Thiobacillus
           denitrificans ATCC 25259]
 gi|74055596|gb|AAZ96036.1| D-alanyl-D-alanine carboxypeptidase-like protein [Thiobacillus
           denitrificans ATCC 25259]
          Length = 321

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 101/233 (43%), Gaps = 28/233 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAATQNPSKLYLKEKTYFTTEQGI-LAL 135
           AS+TK+MT  ++ +  Q     L+ +I + S    T   +   L   + +T  Q + LAL
Sbjct: 78  ASITKLMTAMLVIDADQP----LDERITITSADRDTLKGTGSRLAIGSSYTRGQLLHLAL 133

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I  S N  + A G    G   +F   M+  A+ +GM +T+Y   +GL   N+ +TA+D A
Sbjct: 134 IA-SDNRAAHALGRSYPGGIDRFVSTMNRTARALGMHDTVYVEPTGLSSGNR-STAQDLA 191

Query: 196 ILGILLRKNFPQ--------YYKYFS----------IRKFRYRNRIITNHNKLLNKMHNI 237
            L     +NF +        YY   +            +  YR     N N+L      +
Sbjct: 192 KLVDFAYQNFSEIRNISTTGYYTLGTQRVVVKKKRKKARVLYRPVAFNNTNRLTRMDDWV 251

Query: 238 DGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
            G+ KTG+   +G  +V   +  +  ++ V++    +  R   A   I ++LE
Sbjct: 252 IGLSKTGFINEAGHCLVMQAQIAERDVIIVLLDATGTNRRAGDAAR-IKAWLE 303


>gi|256393602|ref|YP_003115166.1| serine-type D-Ala-D-Ala carboxypeptidase [Catenulispora acidiphila
           DSM 44928]
 gi|256359828|gb|ACU73325.1| Serine-type D-Ala-D-Ala carboxypeptidase [Catenulispora acidiphila
           DSM 44928]
          Length = 419

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 79/210 (37%), Gaps = 21/210 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR---YPASLTKMMTLYIIFEYLQSKKLHLNTQIP-VSKTA 110
           S +V D    Q+    +  P    YPAS  K++T   +   L   +    T  P  +  A
Sbjct: 57  SYVVADYATGQI--LAEQSPHRELYPASTLKVLTADTLIPRLDPAR----TVTPKAADFA 110

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A  + S + +     ++      A    SAND        +SG        M  +A+ +G
Sbjct: 111 AEPDGSVVGMTAGVTYSIADLWRATFVESANDAVAEL-AHLSGGLSATVAAMRQEARSLG 169

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSIRKFRYRNR-----I 223
             +T   +A G     Q+T+A D   L I  R     P +  Y  +++  +         
Sbjct: 170 AHDTTVLDADGYDQDGQLTSAYD---LAIFARAGLRLPAFRAYCDLKQTTFPGPKGTTLT 226

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
           +  H+ ++     + GIK G T  +G   V
Sbjct: 227 LVGHDPMIKSYPGMIGIKGGLTTKAGHTYV 256


>gi|269102713|ref|ZP_06155410.1| murein-DD-endopeptidase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268162611|gb|EEZ41107.1| murein-DD-endopeptidase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 242

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 15/142 (10%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG--ILAL 135
           AS+TK+MT  +  +     KL LN +I  +K A  +     Y + +   T  +G  I   
Sbjct: 4   ASITKLMTAMVTLD----AKLPLNEKITFNK-ADKERMYNNYTRVRLGSTLSRGETIHIA 58

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S N  + A      G  K F   M+ KAK +GM +T + ++SGL  +N ++TA D  
Sbjct: 59  LMSSENLAAAALAGHYPGGSKAFVKAMNAKAKALGMTHTRFVDSSGLDPRN-VSTASD-- 115

Query: 196 ILGILLRKNFPQYYKYFSIRKF 217
            +  L+R      YKY  IRK+
Sbjct: 116 -VSKLVR----AAYKYPQIRKY 132


>gi|323341764|ref|ZP_08081997.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein
           [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464189|gb|EFY09382.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein
           [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 434

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 4/131 (3%)

Query: 57  IVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           I++D    Q    K  D   +PAS+TK++T+    E L    L     IP  +     +P
Sbjct: 41  ILVDPKTGQTLAEKNHDASIHPASITKVLTVITAIEALGETSLDTLYTIP-PEVFEGLDP 99

Query: 116 --SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S    +E    T    +  ++  S  D + A   +++   +K  + M+  A++IGM+N
Sbjct: 100 IASVAGFQEGDQVTLNDLLHGIMLPSGADATRAISSYLTHDPEKLVVKMNRLAQRIGMKN 159

Query: 174 TIYKNASGLHD 184
           + + N SGL D
Sbjct: 160 SHFVNTSGLDD 170


>gi|319653046|ref|ZP_08007150.1| hypothetical protein HMPREF1013_03765 [Bacillus sp. 2_A_57_CT2]
 gi|317395265|gb|EFV75999.1| hypothetical protein HMPREF1013_03765 [Bacillus sp. 2_A_57_CT2]
          Length = 290

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 70/145 (48%), Gaps = 9/145 (6%)

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK-IGMQNTIYKNASGLHDKNQITT 190
           +  ++  S ND + +  E + G+ K F+  +++  ++  G++NT + N  GL D+N  TT
Sbjct: 7   VQGMLINSGNDAAWSIAEHLDGNMKAFSENLNHYLEESAGLKNTHFVNPHGLFDENHYTT 66

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----IITNHNKLLNKM--HNIDGIKTG 243
           A D A L     KN   + + +  ++ ++  +     I T+H  L  ++    + G KTG
Sbjct: 67  AGDLAKLTNYALKN-ETFREIYGTKEMKWAGKSWDTTIFTHHRMLKGEVPFEGVTGGKTG 125

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVM 268
           +   +   + TS       + A+V+
Sbjct: 126 FVDEAKQTLATSAENDSIKLTAIVL 150


>gi|157369595|ref|YP_001477584.1| D-alanyl-D-alanine endopeptidase [Serratia proteamaculans 568]
 gi|157321359|gb|ABV40456.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Serratia
           proteamaculans 568]
          Length = 309

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 31/212 (14%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S++V+D+  ++ M     DE    AS+TK+MT  +           L+  +P+ +  +  
Sbjct: 45  SAMVVDMQTHKVMYARNPDEVVPIASITKLMTAMVT----------LDAHLPLDEMLSVD 94

Query: 113 --QNPSKLYLKEKTYFTTEQG-----ILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
             Q P    +  +    +E       +LAL++ S N  + +      G    F   M+ K
Sbjct: 95  IHQTPEMKGVYSRVRLNSEISRKDMLLLALMS-SENRAAASLAHHYPGGYGAFIKAMNAK 153

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS----IRKFRYRN 221
           AK +GM NT Y   +GL   N ++TARD   L ++  K +P   +  +    +  F+  N
Sbjct: 154 AKSLGMTNTRYVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTTERMASFKDPN 211

Query: 222 RII----TNHNKLLNKMHNIDGIKTGYTRNSG 249
             +    TNH  + N+  NI   KTG+T  +G
Sbjct: 212 YTLPFRNTNH-LVYNQKWNIQLTKTGFTNEAG 242


>gi|297196040|ref|ZP_06913438.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|297153041|gb|EFH32114.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 367

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 60/149 (40%), Gaps = 23/149 (15%)

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND      E ++G     A  M  KA+ +G  +T   +  G  +  Q+++A D A+ G
Sbjct: 127 SGNDAVRVLAE-MNGGWAATAEQMQAKARALGAFDTHVVSPDGYDEPGQVSSAFDLAVFG 185

Query: 199 ILLRKNF--PQYYKYFSIRKFRYRNRI-----------ITNHNKLLNKMHNID------G 239
              R     PQ+  Y S     +               I N N+LL     ++      G
Sbjct: 186 ---RAGLTDPQFASYASTVDAPFPGGTRDDGSPTWTYGIRNTNRLLTGADGVERYPGIIG 242

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +K GYT N+G  +V + R     +V  V+
Sbjct: 243 VKNGYTSNAGNTLVAAARRDGRTLVVTVL 271


>gi|238925374|ref|YP_002938891.1| putative D-alanyl-D-alanine carboxypeptidase precursor [Eubacterium
           rectale ATCC 33656]
 gi|238877050|gb|ACR76757.1| predicted D-alanyl-D-alanine carboxypeptidase precursor
           [Eubacterium rectale ATCC 33656]
          Length = 367

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 76/170 (44%), Gaps = 23/170 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHL--NTQIPVSK 108
           +  Y+ ++ + +   + G    E  YPAS+TK+MT+ +  E  +   +    N    + +
Sbjct: 95  ESSYAVVIDEQDGTVVAGKNAHEKMYPASMTKVMTVLVAAEQAEKNAIAAAENENTEIDR 154

Query: 109 TAATQNPSKLYL---KEKTYFT-----TEQGIL------------ALITRSANDVSTAFG 148
            A  +N     +   +E T ++     +  G L              I  S  + +    
Sbjct: 155 QAVIENKLNEVVTITREATDYSYVHDCSTTGFLDGEQVPLRDVFNGTILPSGGESAYQLA 214

Query: 149 EFISGSEKKFAILMSNKAKKIGM-QNTIYKNASGLHDKNQITTARDQAIL 197
            + +GS + F  +M+ KA ++G+ Q T + N  G++D+N  +TA D A++
Sbjct: 215 VYTAGSMEAFVDMMNQKAAELGIGQTTHFANPVGIYDENNYSTAYDMAVI 264


>gi|238920707|ref|YP_002934222.1| D-alanyl-D-alanine endopeptidase [Edwardsiella ictaluri 93-146]
 gi|238870276|gb|ACR69987.1| D-alanyl-D-alanine endopeptidase [Edwardsiella ictaluri 93-146]
          Length = 309

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 99/235 (42%), Gaps = 16/235 (6%)

Query: 45  ASELHAK---PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHL 100
           A+EL A       S++V+D+N +Q+      + + P AS+TK+MT  +  +      L  
Sbjct: 33  AAELRAPLTLASGSAMVVDLNNHQVIYASHPDIQVPIASITKLMTAMVTLD--AHPNLDE 90

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
              + + +T   +      ++  +  T  Q +L  +  S N  +        G    F  
Sbjct: 91  VIAVDIHRTKELKGVFS-RVRVGSELTRRQMLLLALMSSENRAAATLAHHYPGGYDAFIR 149

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS--IRKFR 218
            M+ KA+ +GM  T Y   +GL   N +++ARD   L +   K +P   +  +   R   
Sbjct: 150 AMNAKARALGMTRTHYVEPTGLSPDN-VSSARDLVKL-LQAAKGYPLIGELSTTETRSVT 207

Query: 219 YRNRIIT----NHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           + +   T    N N LL N   +I   KTG+T  +G  +         P+  VV+
Sbjct: 208 FTHPTYTETFNNTNHLLRNDKWDIQMTKTGFTNQAGHCLAMRTVIGGRPVALVVL 262


>gi|291524311|emb|CBK89898.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale DSM 17629]
 gi|291527663|emb|CBK93249.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale M104/1]
          Length = 367

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 76/170 (44%), Gaps = 23/170 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHL--NTQIPVSK 108
           +  Y+ ++ + +   + G    E  YPAS+TK+MT+ +  E  +   +    N    + +
Sbjct: 95  ESSYAVVIDEQDGTVVAGKNAHEKMYPASMTKVMTVLVAAEQAEKNAIAAAENENTEIDR 154

Query: 109 TAATQNPSKLYL---KEKTYFT-----TEQGIL------------ALITRSANDVSTAFG 148
            A  +N     +   +E T ++     +  G L              I  S  + +    
Sbjct: 155 QAVIENKLNEVVTITREATDYSYVHDCSTTGFLDGEQVPLRDVFNGTILPSGGESAYQLA 214

Query: 149 EFISGSEKKFAILMSNKAKKIGM-QNTIYKNASGLHDKNQITTARDQAIL 197
            + +GS + F  +M+ KA ++G+ Q T + N  G++D+N  +TA D A++
Sbjct: 215 VYTAGSMEAFVDMMNQKAAELGIGQTTHFANPVGIYDENNYSTAYDMAVI 264


>gi|326777112|ref|ZP_08236377.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces cf. griseus
           XylebKG-1]
 gi|326657445|gb|EGE42291.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces cf. griseus
           XylebKG-1]
          Length = 477

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 20/215 (9%)

Query: 77  PASLTKMMTLYIIFEYLQSKKL-HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           PAS  KM+    +   LQ   L H  T+  +S     +  S + +KE   +T     L +
Sbjct: 99  PASTLKMLFADTVLPALQPTSLTHKVTEGELSGVG--EGSSLVGIKEDHTYTVHDLWLGV 156

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
             RS ND      E   G  +  +  M   A+++   +T   +  G     Q+++A D  
Sbjct: 157 FLRSGNDAVHVLSEMYGGVPQTVSA-MQKHAEELQALDTRVVSPDGYDAPGQVSSAYDLT 215

Query: 196 ILG--ILLRKNFPQYYKYFSI------RKFRYRNRI-ITNHNKLLNKMHNID------GI 240
           ++    L +K+F +Y    S       +K + R    I N N+L+     +D      G+
Sbjct: 216 LIARSGLQKKDFREYAATASADFPGEEKKGKKRESFEIQNTNRLITGDIGVDPYQGIAGV 275

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           K GYT ++G N  T +  ++  ++ V +  P+++E
Sbjct: 276 KNGYTTHAG-NTFTGVAERNGKVLLVTVMNPSAEE 309


>gi|90413839|ref|ZP_01221826.1| Hypothetical D-alanyl-D-alanine endopeptidase [Photobacterium
           profundum 3TCK]
 gi|90325150|gb|EAS41653.1| Hypothetical D-alanyl-D-alanine endopeptidase [Photobacterium
           profundum 3TCK]
          Length = 298

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 31/204 (15%)

Query: 31  MGKILFL--SIIMISMASELHAK-----------PKYSSIVIDVNKNQMTGFKQDEPRYP 77
           MG+ L    S++ +S+A+  HA               S+ V D+   +    K      P
Sbjct: 1   MGRALLFIFSLVSVSIATSAHATTAKLDPNNIQTASVSTYVTDLKSGKTLYKKNQNVVMP 60

Query: 78  -ASLTKMMTLYIIFEYLQSKKLHLNTQI---PVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
            AS+TK+MT  +  +     KL L+ +I   P+ K       +++ + E      E   +
Sbjct: 61  LASITKLMTAMVTLD----AKLPLDEKITFKPIDKKRMYNGYTRIRM-ESRLSRGETIHI 115

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           AL++      +   G +  G +  F   M+ KAK +GM NT + ++SGL+ KN ++TA D
Sbjct: 116 ALMSSENLAAAALAGNYPGGYDA-FIKAMNAKAKALGMTNTRFVDSSGLNPKN-VSTASD 173

Query: 194 QAILGILLRKNFPQYYKYFSIRKF 217
                  + K     YKY  IRK+
Sbjct: 174 -------INKMAKAAYKYAKIRKY 190


>gi|289549537|ref|YP_003470441.1| penicillin binding protein 4 [Staphylococcus lugdunensis HKU09-01]
 gi|289179069|gb|ADC86314.1| penicillin binding protein 4 [Staphylococcus lugdunensis HKU09-01]
          Length = 269

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 22/167 (13%)

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI---------------TTAR 192
            E I G+   F   M+ KA+ + M++T + N SG  D   I               TTA+
Sbjct: 2   AEHIDGNSSDFTHRMNRKAQALHMRHTHFNNPSGA-DNRLIKPFAPSKYKQQHFSKTTAK 60

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL----NKMHNIDGIKTGYTRNS 248
           D A+L   L K  P+  K   +   +    ++ N N  L    + +   DG+KTG T N 
Sbjct: 61  DMAVLTQQLVKQHPKVLKITRLTSDKQHGHMLKNTNLSLPAQADGLAGADGLKTG-TSNH 119

Query: 249 GFNIVTSLRYKDDPIVAVVMGM-PTSQERDQKALELITSFLEKKTLK 294
           G+N+  + +  +  I +V+  + P + ER +   + +++ + ++  K
Sbjct: 120 GYNLALTAKQNNLRIHSVLFQVQPFADERAKHVRQQLSNIMVRRAFK 166


>gi|320009813|gb|ADW04663.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           flavogriseus ATCC 33331]
          Length = 299

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 94/221 (42%), Gaps = 25/221 (11%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA------TQNPSKLYLK 121
           G   D  R   S TK+MT  ++   L  K L+L+ ++ V K  +      T + ++L + 
Sbjct: 62  GKSADTRRSTGSTTKIMTAKVV---LAQKNLNLDAKVTVQKAYSDYIVKNTASSARLIVG 118

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGE-FISGSE-----KKFAILMSNKAKKIGMQNTI 175
           +K   T  Q +  L+  S  D + A  + F +GS      K F   M+  AK +G++NT 
Sbjct: 119 DK--VTVRQLLYGLMLPSGCDAAYALADKFGTGSTRAARVKSFIGKMNASAKSLGLKNTH 176

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSIRK------FRYRNRIITNH 227
           + +  G+   +  +T RD   +     KN  F    K  S ++        YR     N 
Sbjct: 177 FDSFDGIGGGSNYSTPRDLTKIASSAMKNSTFRAIVKTKSTKQKVTTKTGGYRYMSWANT 236

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N +L     + G+KTG    + + +V +       ++  V+
Sbjct: 237 NAMLGSYSGMIGVKTGSGPTAKYCLVFAATRNGKTVIGTVL 277


>gi|332978541|gb|EGK15250.1| D-alanyl-D-alanine endopeptidase PbpG [Psychrobacter sp.
           1501(2011)]
          Length = 343

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 111/250 (44%), Gaps = 20/250 (8%)

Query: 57  IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYL--QSKKLHLNTQIPVSKTAATQ 113
           IV+DV   +    K  +   P AS+TK+MT  ++ +      +++ L+ +  V    A+ 
Sbjct: 101 IVLDVATGKPLYEKNADIARPIASITKIMTAMVVLDAGLDMREEIKLDPEDFVGPKRASS 160

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
                 LK        + +L  + +S N  + +      G    F   M+ KA+ +GM +
Sbjct: 161 R-----LKSGDRMNRAELLLMALMKSENPAAKSLARNYPGGYDAFMRAMNAKARSLGMNS 215

Query: 174 TIYKNASGLHDKNQITTARDQAIL-------GILLRKNFPQYYKYFSIRKFRYRNRI--I 224
             + + +GL DK  + +  D A +        ++ R +  + Y ++ +  +   NR    
Sbjct: 216 AFFGDPTGL-DKRNVASPMDLAKMVQAAGQYEVIRRFSTTKNYDFY-VANYTDGNRTYPA 273

Query: 225 TNHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           +N +KL+       GI KTG+   +G  +V   ++ + P + V++G  +S  R   A  +
Sbjct: 274 SNTSKLVRGGTYPIGISKTGFINEAGQCVVMETQFNNRPAIIVILGADSSNTRWNDAENI 333

Query: 284 ITSFLEKKTL 293
           + +   ++T+
Sbjct: 334 LHNLALRRTV 343


>gi|145483651|ref|XP_001427848.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124394931|emb|CAK60450.1| unnamed protein product [Paramecium tetraurelia]
          Length = 472

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 102/244 (41%), Gaps = 50/244 (20%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQ---IPVSKTA 110
           S IV D  +N++   ++   R   ASLTK+MT YI    L  K+L+L +Q   + V+K A
Sbjct: 209 SFIVYDCLENRIISQRKCNRRMEIASLTKIMTFYITMVIL--KQLNLKSQDIKVKVTKKA 266

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG------SEKK------- 157
           +    +   LK     T +  +  L+  S ND +T   + I        ++K+       
Sbjct: 267 SETIGTTAELKYNDILTIQDLLYGLMLPSGNDAATLIAQAIGTIILFYEADKRLDSKLID 326

Query: 158 ------------------------FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
                                   F   M++ +  +G QNT +    GL +++  ++  D
Sbjct: 327 IEQMSAEGHYYNVELKSHQCPIEIFISKMNHYSTLMGQQNTQFACVHGLANEDNYSSCHD 386

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
             +L +   K     Y  F    +  ++    N NKLL+K     GIKTG T ++G  + 
Sbjct: 387 IVLLSLECMK-----YDTFQQPLYNQKSYEWKNTNKLLDK--GFFGIKTGVTDSAGPCLA 439

Query: 254 TSLR 257
           ++ R
Sbjct: 440 SAYR 443


>gi|213964906|ref|ZP_03393105.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium amycolatum
           SK46]
 gi|213952442|gb|EEB63825.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium amycolatum
           SK46]
          Length = 325

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 15/145 (10%)

Query: 58  VIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           V D+    +   K    RY PAS+ K++   +  E L+   L L+T +  +   A    S
Sbjct: 25  VFDLKSGDVLAAKDPHGRYRPASIIKVL---LAMEALED--LKLDTPVKATFEDANMEGS 79

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG----SEKKFAILMSNKAKKIGMQ 172
           ++ + E   ++ E  +  L+  S ND   A    + G    +EK  A+     AKK+G  
Sbjct: 80  RVGIVEDVNYSVETLLTGLLLNSGNDTGHALARELGGMDKTTEKVNAL-----AKKLGAT 134

Query: 173 NTIYKNASGLHDKNQITTARDQAIL 197
           +T   N +GL    Q+T+A D ++ 
Sbjct: 135 DTRVVNPTGLDAPGQMTSAYDMSLF 159


>gi|54022905|ref|YP_117147.1| putative penicillin-binding protein [Nocardia farcinica IFM 10152]
 gi|54014413|dbj|BAD55783.1| putative penicillin-binding protein [Nocardia farcinica IFM 10152]
          Length = 434

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 85/207 (41%), Gaps = 21/207 (10%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++  ++   K    RY PAS  K++   +    L   ++   TQ       A  + 
Sbjct: 116 MVSDLDTGEVLAAKDPHGRYRPASTIKVLLAIVALRTLDLDRVVTGTQ-----ADADVDG 170

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           +++ +     +T  Q + ALI  S ND + A    + G +   A  M+  AK +   +T 
Sbjct: 171 TRVGIGPGGRYTNRQLMQALIMASGNDAAHAIAAQLGGDKATVA-RMNEVAKSLSAFDTR 229

Query: 176 YKNASGLHDKNQITTARDQAIL----------GILLRK---NFPQYYKYFSIR-KFRYRN 221
               SGL      T+A D ++L            L+R    +FP Y K   I     +  
Sbjct: 230 AATPSGLDGPGMTTSAYDLSLLFREAMTIPLFAELIRTEQIDFPGYPKNPLIPDDTDHPG 289

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNS 248
             I N N+LL       G KTG+T ++
Sbjct: 290 FPIGNDNQLLYNYAGALGGKTGFTDDA 316


>gi|93007306|gb|ABE97154.1| putative D-alanyl-D-alanine carboxypeptidase [Pasteuria ramosa]
          Length = 179

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 31/42 (73%)

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
            +DG+KTG+T N+GF I ++ +  +  ++AVVMG P+S+ R+
Sbjct: 2   GVDGLKTGFTGNAGFCISSTAKRDNLRVIAVVMGEPSSKVRN 43


>gi|54309061|ref|YP_130081.1| D-alanyl-D-alanine endopeptidase [Photobacterium profundum SS9]
 gi|46913493|emb|CAG20279.1| Hypothetical D-alanyl-D-alanine endopeptidase [Photobacterium
           profundum SS9]
          Length = 316

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 94/218 (43%), Gaps = 35/218 (16%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAK-----------PKYSSIVIDVNK 63
           L +P G+I + R +     +   S++ + +A+  HA               S+ V D+  
Sbjct: 11  LFHPQGAI-VGRAL-----LFIFSLVSVGIATSAHATTAKLDPNNIQTASVSTYVTDLKS 64

Query: 64  NQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI---PVSKTAATQNPSKLY 119
            +    K      P AS+TK+MT  +  +     KL L+ +I   P+ K       +++ 
Sbjct: 65  GKTLYKKNQNVVMPLASITKLMTAMVTLD----AKLPLDEKITFKPIDKKRMYNGYTRIR 120

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           ++ +   +  + I   +  S N  + A      G    F   M+ KAK +GM NT + ++
Sbjct: 121 MESR--LSRGETIHIALMSSENLAAAALAGSYPGGYDAFIKAMNAKAKALGMTNTRFVDS 178

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           SGL  KN ++TA D       + K     YKY  IR++
Sbjct: 179 SGLDPKN-VSTASD-------INKMAKAAYKYTKIREY 208


>gi|302544682|ref|ZP_07297024.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462300|gb|EFL25393.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 309

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 94/235 (40%), Gaps = 40/235 (17%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-------QNPSKLYLKEKTYFTTEQ 130
            S TK+MT  ++   L    L+LN+++ + K  +         + ++L + +K   T  Q
Sbjct: 81  GSTTKIMTARVV---LAQPNLNLNSKVTIQKAYSDYIVDNNWASSARLIVGDK--VTVRQ 135

Query: 131 GILALITRSANDVSTAFGE-FISGSE-----KKFAILMSNKAKKIGMQNTIYKNASGLHD 184
            +  L+  S  D + A  + F SGS      K F   M++ AK +G++NT + +  G+  
Sbjct: 136 LLYGLMLPSGCDAAYALADKFGSGSTRAARVKSFIGKMNSTAKSLGLKNTNFDSFDGIGH 195

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFR---------------YRNRIITNHNK 229
               +T RD       L K      KY + R                  YRN    N N 
Sbjct: 196 GKNYSTPRD-------LTKLASSAMKYSTFRSVVKTKKTTQKTVTKSGGYRNMTWENTNP 248

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           LL       G+KTG    + + +V +       ++  V+   +   R   A +L+
Sbjct: 249 LLGTYSGAIGVKTGSGPEAKYCLVFAATRSGKTVIGTVLASSSVATRTSDAKKLL 303


>gi|213418658|ref|ZP_03351724.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 88

 Score = 43.5 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 111 ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           AT NP     S ++LK        Q I  +  +S ND   A  +F +GS+  F  LM++ 
Sbjct: 4   ATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSY 63

Query: 166 AKKIGMQNTIYKNASGLHDKNQITT 190
              +G++NT ++   GL    Q ++
Sbjct: 64  VNALGLKNTHFQTVHGLDADGQYSS 88


>gi|182436490|ref|YP_001824209.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178465006|dbj|BAG19526.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 571

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 20/215 (9%)

Query: 77  PASLTKMMTLYIIFEYLQSKKL-HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           PAS  KM+    +   LQ   L H  T+  +S     +  S + +KE   +T     L +
Sbjct: 199 PASTLKMLFADTVLPALQPTTLTHKVTEGELSGVG--EGSSLVGIKEDHTYTVHDLWLGV 256

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
             RS ND      E   G  +  +  M   A+++   +T   +  G     Q+++A D  
Sbjct: 257 FLRSGNDAVHVLSEMYGGVPQTVSA-MQKHAEELQALDTRVVSPDGYDAPGQVSSAYDLT 315

Query: 196 ILG--ILLRKNFPQYYKYFSI------RKFRYRNRI-ITNHNKLL------NKMHNIDGI 240
           ++    L +K+F +Y    S       +K + R    I N N+L+      +    I G+
Sbjct: 316 LIARSGLQKKDFREYAATASADFPGEEKKGKKRESFEIQNTNRLITGDIGVDPYQGIAGV 375

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           K GYT ++G N  T +  ++  ++ V +  P+++E
Sbjct: 376 KNGYTTHAG-NTFTGVAERNGKVLLVTVMNPSAEE 409


>gi|284029293|ref|YP_003379224.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Kribbella
           flavida DSM 17836]
 gi|283808586|gb|ADB30425.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Kribbella
           flavida DSM 17836]
          Length = 380

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 76/194 (39%), Gaps = 10/194 (5%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D+    +   K    +  PAS  K +T  ++   L  K + + T             
Sbjct: 59  VVADIGTGAVLAAKAPHAKLRPASTLKTLTALVLLPRLNKKDVVVGTNQDAGIVG----- 113

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           SK+ +     ++ +     +   S ND   A  +   G        M+  A  +G  +T 
Sbjct: 114 SKVGVYPGLRYSVDLLFEGMFLASGNDAVNALVQHDEGGTAGTVQRMNKLAADLGALDTH 173

Query: 176 YKNASGLHDKNQITTARDQAILG--ILLRKNFPQYY--KYFSIRKFRYRNRIITNHNKLL 231
             + +GL    Q+++A D A+     L R++F +Y   KY +          + N NKLL
Sbjct: 174 VTDPTGLDADGQVSSAYDLALFARAGLARRDFAKYAATKYTNFPLAESGTYQVANQNKLL 233

Query: 232 NKMHNIDGIKTGYT 245
                  G+KTGYT
Sbjct: 234 FNYDGALGVKTGYT 247


>gi|254362625|ref|ZP_04978714.1| S11 family D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica
           PHL213]
 gi|261492868|ref|ZP_05989414.1| S11 family D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496782|ref|ZP_05993157.1| S11 family D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|153094239|gb|EDN75110.1| S11 family D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica
           PHL213]
 gi|261307621|gb|EEY08949.1| S11 family D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311409|gb|EEY12566.1| S11 family D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 291

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 26/211 (12%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---- 111
           +V D+N+ + + G   +  R  AS+TK+MT  +   +L+  +   + Q  +  + A    
Sbjct: 46  VVFDLNQKKFLEGKNFNLVRPIASVTKLMTAVV---FLEENRYGASCQTQILPSDADFLK 102

Query: 112 -TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            T +P    L +       + + A++ RS N  + A       ++ +F   M++KA++IG
Sbjct: 103 GTTSP----LPKNLNIACSELLKAMLVRSDNYAAHALAHATHLNKAQFLARMNSKAREIG 158

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILG--------ILLRKNFPQYYKYFSIRKFRYRNR 222
           M  T + ++SGL   N ++T  D A L         I    N P    Y   R F  +N 
Sbjct: 159 MTQTYFGDSSGLSSDN-VSTVVDLAKLAGYAASKPEIQQLSNSPLVSVYAGGRYFSMKN- 216

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
               ++ + ++ +     KTGYTR +G+N+ 
Sbjct: 217 ---TNSMVRSQSYQALVSKTGYTREAGYNLA 244


>gi|78062125|ref|YP_372033.1| murein-DD-endopeptidase [Burkholderia sp. 383]
 gi|77970010|gb|ABB11389.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Burkholderia sp. 383]
          Length = 364

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 6/144 (4%)

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           +AL++ S N  + A      G    F   M+ +A+++GM++T ++  +GL   N ++TA 
Sbjct: 203 IALMS-SENRAAAALSRDYPGGRAAFVNAMNREARRLGMRHTHFREPTGLSPHN-VSTAE 260

Query: 193 DQA-ILGILLRKNFPQYYKYFSIRKFRYRNR--IITNHNKLLN-KMHNIDGIKTGYTRNS 248
           D A ++G   +    +Y+   +    R  +   +  N + L+  +   I   KTG+   S
Sbjct: 261 DLAKLVGAAAQDPLIRYFSTDTSTTVRPGDGELLYVNSDPLVRYRRLPIRLQKTGFINES 320

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPT 272
           G  +V  +R K      V++G PT
Sbjct: 321 GHGVVMRMRVKGRRETVVLLGAPT 344


>gi|239930109|ref|ZP_04687062.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
           14672]
 gi|291438449|ref|ZP_06577839.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
           14672]
 gi|291341344|gb|EFE68300.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
           14672]
          Length = 299

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 99/244 (40%), Gaps = 22/244 (9%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV----SKTAATQNP 115
           D N   +     D  R   S TK+MT  ++   L  K L+L+ ++ +    S    ++N 
Sbjct: 52  DANGKSLYTKAADTRRSTGSTTKIMTAKVV---LAQKNLNLDAKVTIQMAYSDYIVSKNA 108

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGE-FISGSE-----KKFAILMSNKAKKI 169
           S   L      T  Q +  L+  S  D + A  + F +GS      K F   M+ +AKK+
Sbjct: 109 SSARLIVGDKVTVRQLLYGLMLPSGCDAAYALADKFGTGSTRSARVKSFIGKMNAEAKKL 168

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSIRKFRYRNRI---- 223
           G++NT + +  G+ +    +T RD   +     KN  F    K                 
Sbjct: 169 GLKNTHFDSFDGIGNGKNYSTPRDLTKIASSAMKNSTFRTIVKTKKYTAKTTTKTGSTRT 228

Query: 224 ---ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
               TN N LL+      G+KTG    S + +V +       ++  V+   ++ +R+  A
Sbjct: 229 MAPWTNTNTLLSNYSGTIGVKTGSGSTSKYCLVFAATRNGKTVIGTVLTSSSAAQRETDA 288

Query: 281 LELI 284
            +L+
Sbjct: 289 KKLL 292


>gi|291519269|emb|CBK74490.1| D-alanyl-D-alanine carboxypeptidase [Butyrivibrio fibrisolvens
           16/4]
          Length = 376

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 17/195 (8%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGI 132
           PAS+TK++T+     ++ +++  L+ ++ +S  A         S     E    T +   
Sbjct: 150 PASMTKVLTVLTAANHITAEQ--LDDKVILSHEAVDYSYAGGGSTSGFVEDEEVTVKDLF 207

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI-YKNASGLHDKNQITTA 191
              I  S  D +     +++G    F  +M+ +AK++G+  T  + N  G H+K   +T 
Sbjct: 208 YGTILPSGGDAAAQLAIYVAGDIDSFVKMMNEQAKELGISETSHFTNPVGFHNKEHYSTP 267

Query: 192 RDQAILGILLRKNFPQ----YYKYFSIRKFRYRNRIITNHNKLLNKMHN------IDGIK 241
            D AI+ +    N         K ++          IT  N  L ++ +      I+G K
Sbjct: 268 YDIAIIMMAALDNDICKEVISTKVYNSTATNVNPEGITISNWFLRRIEDKEFGGEIEGAK 327

Query: 242 TGYTRNSGFNIVTSL 256
           TGY   SG   V+++
Sbjct: 328 TGYVDESGSCAVSAM 342


>gi|145478811|ref|XP_001425428.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124392498|emb|CAK58030.1| unnamed protein product [Paramecium tetraurelia]
          Length = 313

 Score = 43.1 bits (100), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 118/279 (42%), Gaps = 45/279 (16%)

Query: 54  YSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-A 111
           ++ +++D    ++   K +   R  AS+TK MT Y+  +  +  K+   TQ+ VS +  A
Sbjct: 39  HTWVILDAQTGRLIWGKNEHSNREIASITKSMTAYVTIKICEQLKIDP-TQVTVSVSEYA 97

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE--------------------- 149
           TQ   +   L+E    T    +  L+  S ND + A  E                     
Sbjct: 98  TQIGGTSSNLQEGDSLTLLDLLHGLMLPSGNDSAQAIAENFGVYLYFQSKYFQQKIDSID 157

Query: 150 ------FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
                  ++   + F   M+  A+K+G+ NT + N  GL ++   +TA D A L     K
Sbjct: 158 NDNNTIHVNNPAQYFVAEMNATAQKLGLSNTYFTNPHGLANRLNRSTAYDVAKLCYYAMK 217

Query: 204 NFPQYYKYFSIRKFRY------RNRII--TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
             P + +    +++        + R++   N NKLL +     GIKTG T ++G  + + 
Sbjct: 218 -LPLFAQIVRTKEYSCTVTNLGQTRVLKWENTNKLLEQ--GFSGIKTGVTNDAGPCLASH 274

Query: 256 LRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKK 291
              +    + VV+   + ++R     + ++ +T   EK+
Sbjct: 275 FISRKHSYILVVLNCNSKEQRWVDSCRLIDWVTDIYEKQ 313


>gi|282863879|ref|ZP_06272937.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           sp. ACTE]
 gi|282561580|gb|EFB67124.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           sp. ACTE]
          Length = 321

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 81/190 (42%), Gaps = 21/190 (11%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFT 127
           D  R   S TK+MT  ++   L  K L+L++++ + K  +    ++N S   L      T
Sbjct: 88  DTRRPTGSTTKIMTAKVV---LAQKNLNLDSKVTIQKAYSDYIVSKNASSARLIVGDKVT 144

Query: 128 TEQGILALITRSANDVSTAFGE-FISGSE-----KKFAILMSNKAKKIGMQNTIYKNASG 181
             Q +  L+  S  D + A  + F SGS      K F   M+  AK +G++NT + +  G
Sbjct: 145 VRQLLYGLMLPSGCDAAYALADKFGSGSTRAARVKSFIGKMNASAKSLGLKNTHFDSFDG 204

Query: 182 LHDKNQITTARDQAILGILLRKN--FPQYYKYFSIRK------FRYRNRIITNHNKLLNK 233
           +   +  +T RD   L     KN  F    K  S ++        YR     N N LL  
Sbjct: 205 IGSGSNYSTPRDLTKLASNAMKNSTFRTVVKTKSTKQKVTTKSGGYRYMAWDNTNPLLGG 264

Query: 234 MHNIDGIKTG 243
                G+KTG
Sbjct: 265 YSGAIGVKTG 274


>gi|90578556|ref|ZP_01234366.1| Hypothetical D-alanyl-D-alanine endopeptidase [Vibrio angustum S14]
 gi|90439389|gb|EAS64570.1| Hypothetical D-alanyl-D-alanine endopeptidase [Vibrio angustum S14]
          Length = 298

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 18/167 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+ VID++  +    K    + P ASLTK+MT  +  +     KL LN ++  + T   +
Sbjct: 38  SNYVIDLSTGKTLYKKNSNVKMPIASLTKLMTAMVTLD----AKLPLNEKLTFTPTDK-E 92

Query: 114 NPSKLYLKEKTYFTTEQGI---LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                Y + +   T  +G    +AL++      +T  G +  G E  F   M+ KAK +G
Sbjct: 93  RMYNTYTRIRMGSTLSRGETIHIALMSSENLAAATLAGNYPGGYEA-FIKAMNRKAKSLG 151

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           M NT + ++SGL   N  +TA D A       K     YKY  IRK+
Sbjct: 152 MTNTHFVDSSGLDPHNH-STASDVA-------KMVRAAYKYPEIRKY 190


>gi|298231089|ref|ZP_06964770.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae str.
           Canada MDR_19F]
          Length = 134

 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 60/105 (57%), Gaps = 8/105 (7%)

Query: 56  SIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KT 109
           +I ++ N  ++  +++D  +P   AS+TK++T+Y+++E L++  + L+T + +S    + 
Sbjct: 32  AIAVEANTGKIL-YEKDATQPVEIASITKLITVYLVYEALENGSITLSTPVDISDYPYQL 90

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
                 S + ++ + Y T E+ + A +  SAN  + A  E I+GS
Sbjct: 91  TTNSEASNIPMEARNY-TVEELLEATLVSSANSAAIALAEKIAGS 134


>gi|295104652|emb|CBL02196.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 447

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 78/171 (45%), Gaps = 9/171 (5%)

Query: 34  ILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQDEPRYPAS-LTKMMTLY 87
           +  LS +++   +     P Y     S+ +++ + N +   K    +  A  LTK MTL 
Sbjct: 12  VFLLSCLVLPAGAMFDPSPVYQVQAASAYIVNTDTNIIVYDKDSTKQVSAGGLTKYMTLA 71

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           ++     + +L    Q+P + +    N +   ++    FT  + + A++TR+AN+ +   
Sbjct: 72  VLLTNY-ADQLDNTFQMPFAISDYVYNTNNADMRSNETFTYREAMYAMLTRNANEAAMGV 130

Query: 148 GEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
              +SG +   +   M+  +++IG   + + +A G+ D    T A D  ++
Sbjct: 131 AYTLSGGDLDGWVAQMNTLSQRIGTTASSWTDACGI-DSGNTTCAVDMYLI 180


>gi|82408083|pdb|2BCF|A Chain A, Crystal Structure Of A Evolved Putative Penicillin-Binding
           Protein Homolog, Rv2911, From Mycobacterium Tuberculosis
          Length = 276

 Score = 43.1 bits (100), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 16/202 (7%)

Query: 52  PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  + IV D++  Q + G  Q+    PAS  K++   +  +     +L LN+ + V+  A
Sbjct: 18  PAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALD-----ELDLNSTV-VADVA 71

Query: 111 ATQNPSKLY-LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            TQ       +K    +T  Q +  L+  S ND +      + G +   A   + KA  +
Sbjct: 72  DTQAECNCVGVKPGRSYTVRQLLDGLLLVSGNDAANTLAHXLGGQDVTVA-KXNAKAATL 130

Query: 170 GMQNTIYKNASGLHDKNQ--ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN----RI 223
           G  +T     SGL        +TA D  ++      N P + +  +     + +    ++
Sbjct: 131 GATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAXAN-PVFAQIIAEPSAXFPSDDGEQL 189

Query: 224 ITNHNKLLNKMHNIDGIKTGYT 245
           I N ++LL +     G KTGYT
Sbjct: 190 IVNQDELLQRYPGAIGGKTGYT 211


>gi|215447643|ref|ZP_03434395.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T85]
 gi|289759480|ref|ZP_06518858.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T85]
 gi|289715044|gb|EFD79056.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T85]
          Length = 405

 Score = 42.7 bits (99), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 86/211 (40%), Gaps = 24/211 (11%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++   +   +    R+ PAS+ K     ++        L LN  +  +   A    
Sbjct: 98  LVADLDSGAVIAARDPHGRHRPASVIK-----VLVAMASINTLTLNKSVAGTADDAAVEG 152

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG---SEKKFAILMSNKAKKIGMQ 172
           +K+ +     +T  Q +  L+  S ND + A    + G   + +K  +L    A K+G +
Sbjct: 153 TKVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLL----AAKLGGR 208

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYRNRI------I 224
           +T     SGL      T+A D   +G+  R  +  P +    + R F +          +
Sbjct: 209 DTRVATPSGLDGPGMSTSAYD---IGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYEL 265

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
            N N+LL       G KTGYT ++G   V +
Sbjct: 266 ENDNQLLYNYPGALGGKTGYTDDAGQTFVGA 296


>gi|70948643|ref|XP_743805.1| ribose-phosphate pyrophosphokinase [Plasmodium chabaudi chabaudi]
 gi|56523481|emb|CAH80877.1| ribose-phosphate pyrophosphokinase, putative [Plasmodium chabaudi
           chabaudi]
          Length = 465

 Score = 42.7 bits (99), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 4/159 (2%)

Query: 7   QSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQM 66
           +SSAKK  +  PY + Y ++N Q        S+    +A  L      S I +D+N  ++
Sbjct: 181 RSSAKKVIVVLPYLN-YSRQNKQTGYFNNMHSLGAPEIAILLQTCGADSIIAVDLNNPRI 239

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYF 126
            GF  D+  +   L  +    +  EYL+ KKLH    +P++   A +   + +++ K + 
Sbjct: 240 EGFSTDQKLFQPPLMNINPQSLAVEYLKKKKLHNPVIVPINIDGA-EKAKEFWVRMKKH- 297

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           + + G   L++ + +  ST  GE  S   K  + +++NK
Sbjct: 298 SNDVGFTTLVSSTYDGTSTR-GEAPSNESKDSSKMLTNK 335


>gi|15610466|ref|NP_217847.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis H37Rv]
 gi|15842925|ref|NP_337962.1| penicillin-binding protein, putative [Mycobacterium tuberculosis
           CDC1551]
 gi|31794515|ref|NP_857008.1| penicillin-binding protein DacB1 [Mycobacterium bovis AF2122/97]
 gi|121639258|ref|YP_979482.1| putative penicillin-binding protein dacB1 [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148663194|ref|YP_001284717.1| putative penicillin-binding protein DacB1 [Mycobacterium
           tuberculosis H37Ra]
 gi|148824535|ref|YP_001289289.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis F11]
 gi|167967097|ref|ZP_02549374.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis H37Ra]
 gi|215405348|ref|ZP_03417529.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           02_1987]
 gi|215428820|ref|ZP_03426739.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T92]
 gi|215432297|ref|ZP_03430216.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           EAS054]
 gi|218755116|ref|ZP_03533912.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis GM
           1503]
 gi|219559395|ref|ZP_03538471.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T17]
 gi|224991755|ref|YP_002646444.1| putative penicillin-binding protein [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253800375|ref|YP_003033376.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis KZN
           1435]
 gi|254233942|ref|ZP_04927267.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis C]
 gi|254365954|ref|ZP_04981999.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254552436|ref|ZP_05142883.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260188381|ref|ZP_05765855.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260202603|ref|ZP_05770094.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T46]
 gi|260206688|ref|ZP_05774179.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis K85]
 gi|289445020|ref|ZP_06434764.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T46]
 gi|289449022|ref|ZP_06438766.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           CPHL_A]
 gi|289555609|ref|ZP_06444819.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis KZN
           605]
 gi|289571561|ref|ZP_06451788.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T17]
 gi|289576056|ref|ZP_06456283.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis K85]
 gi|289747151|ref|ZP_06506529.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis
           02_1987]
 gi|289752030|ref|ZP_06511408.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T92]
 gi|289755456|ref|ZP_06514834.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis
           EAS054]
 gi|289763521|ref|ZP_06522899.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis GM
           1503]
 gi|294995903|ref|ZP_06801594.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis 210]
 gi|297635986|ref|ZP_06953766.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis KZN
           4207]
 gi|297732983|ref|ZP_06962101.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis KZN
           R506]
 gi|313660315|ref|ZP_07817195.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium tuberculosis KZN
           V2475]
 gi|2894240|emb|CAA17102.1| PROBABLE PENICILLIN-BINDING PROTEIN DACB1 (D-ALANYL-D-ALANINE
           CARBOXYPEPTIDASE) (DD-PEPTIDASE) (DD-CARBOXYPEPTIDASE)
           (PBP) (DD-TRANSPEPTIDASE) (SERINE-TYPE D-ALA-D-ALA
           CARBOXYPEPTIDASE) (D-AMINO ACID HYDROLASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|13883259|gb|AAK47776.1| penicillin-binding protein, putative [Mycobacterium tuberculosis
           CDC1551]
 gi|31620111|emb|CAD95475.1| PROBABLE PENICILLIN-BINDING PROTEIN DACB1 (D-ALANYL-D-ALANINE
           CARBOXYPEPTIDASE) (DD-PEPTIDASE) (DD-CARBOXYPEPTIDASE)
           (PBP) (DD-TRANSPEPTIDASE) (SERINE-TYPE D-ALA-D-ALA
           CARBOXYPEPTIDASE) [Mycobacterium bovis AF2122/97]
 gi|121494906|emb|CAL73389.1| Probable penicillin-binding protein dacB1 [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124599471|gb|EAY58575.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis C]
 gi|134151467|gb|EBA43512.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148507346|gb|ABQ75155.1| putative penicillin-binding protein DacB1 [Mycobacterium
           tuberculosis H37Ra]
 gi|148723062|gb|ABR07687.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis F11]
 gi|224774870|dbj|BAH27676.1| putative penicillin-binding protein [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253321878|gb|ACT26481.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis KZN
           1435]
 gi|289417939|gb|EFD15179.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T46]
 gi|289421980|gb|EFD19181.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           CPHL_A]
 gi|289440241|gb|EFD22734.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis KZN
           605]
 gi|289540487|gb|EFD45065.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis K85]
 gi|289545315|gb|EFD48963.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T17]
 gi|289687679|gb|EFD55167.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis
           02_1987]
 gi|289692617|gb|EFD60046.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T92]
 gi|289696043|gb|EFD63472.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis
           EAS054]
 gi|289711027|gb|EFD75043.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis GM
           1503]
 gi|323718003|gb|EGB27186.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           CDC1551A]
 gi|326905171|gb|EGE52104.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis W-148]
 gi|328460108|gb|AEB05531.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis KZN
           4207]
          Length = 405

 Score = 42.7 bits (99), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 86/211 (40%), Gaps = 24/211 (11%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++   +   +    R+ PAS+ K     ++        L LN  +  +   A    
Sbjct: 98  LVADLDSGAVIAARDPHGRHRPASVIK-----VLVAMASINTLTLNKSVAGTADDAAVEG 152

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG---SEKKFAILMSNKAKKIGMQ 172
           +K+ +     +T  Q +  L+  S ND + A    + G   + +K  +L    A K+G +
Sbjct: 153 TKVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLL----AAKLGGR 208

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYRNRI------I 224
           +T     SGL      T+A D   +G+  R  +  P +    + R F +          +
Sbjct: 209 DTRVATPSGLDGPGMSTSAYD---IGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYEL 265

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
            N N+LL       G KTGYT ++G   V +
Sbjct: 266 ENDNQLLYNYPGALGGKTGYTDDAGQTFVGA 296


>gi|325518516|gb|EGC98206.1| D-alanyl-D-alanine endopeptidase [Burkholderia sp. TJI49]
          Length = 206

 Score = 42.7 bits (99), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 6/144 (4%)

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           +AL++ S N  + A      G    F   M+ +A+++GM++T ++  +GL   N ++TA 
Sbjct: 45  IALMS-SENRAAAALSRDYPGGRTAFVKAMNREARRLGMRHTHFREPTGLSPHN-VSTAE 102

Query: 193 DQA-ILGILLRKNFPQYYKYFSIRKFRYRNR--IITNHNKLLN-KMHNIDGIKTGYTRNS 248
           D A ++G   +    +Y+   +    R  +   +  N + L+  +   I   KTG+   S
Sbjct: 103 DLARLVGAAAQDPLIRYFSTDTSTTVRPGDGELLYVNSDPLVRYRRLPIRLQKTGFINES 162

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPT 272
           G  +V  +R K      V++G PT
Sbjct: 163 GHGVVMRMRVKGRRTTVVLLGAPT 186


>gi|213423411|ref|ZP_03356398.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 160

 Score = 42.7 bits (99), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 209 YKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           Y  +  ++F +      N N LL +   N+DGIKTG+T  +G+N+V S       +++ V
Sbjct: 3   YAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLVASATEGQMRLISAV 62

Query: 268 MGMPTSQERDQKALELIT 285
           MG  T + R+ ++ +L+T
Sbjct: 63  MGGRTYKGRETESKKLLT 80


>gi|120556509|ref|YP_960860.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Marinobacter
           aquaeolei VT8]
 gi|120326358|gb|ABM20673.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Marinobacter aquaeolei VT8]
          Length = 308

 Score = 42.7 bits (99), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 106/248 (42%), Gaps = 27/248 (10%)

Query: 37  LSIIMISMASELHAKPKYSSI---VIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEY 92
           L++   S+AS   A P  +S+     +V K  +  G   D P   AS+TK+MT  ++ E 
Sbjct: 14  LAVSGQSLASPERA-PNLASVQAAAAEVGKEGLLFGKHADRPVPVASITKLMTALVVVES 72

Query: 93  LQSKKLHLNTQ---IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            Q     L  +   +  +  A ++      L+ +         +AL++ S N  +     
Sbjct: 73  GQDMDEWLTFEERHVEAAANAWSRIRVGSQLRRRDVLR-----IALMS-SENFAAYTLAR 126

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ-- 207
              G    F   M+ KAK +GM  T + + +GL   N ++TA D  IL     K+ P+  
Sbjct: 127 VYPGGFDGFVAAMNAKAKALGMLQTRFVDPTGLSTDN-VSTAADLVILARAALKH-PEIR 184

Query: 208 ------YYKYFSIRKFRYRNRIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKD 260
                 YY+    RK RY +    N N L+++    +   KTGY   +G  +V       
Sbjct: 185 EASTTGYYRA-EFRKPRY-SLSFGNTNALVHRDSWGVSLSKTGYLTEAGRCLVMVSEMNG 242

Query: 261 DPIVAVVM 268
            P++ V++
Sbjct: 243 TPVITVLL 250


>gi|291459228|ref|ZP_06598618.1| serine-type D-Ala-D-Ala carboxypeptidase [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291418482|gb|EFE92201.1| serine-type D-Ala-D-Ala carboxypeptidase [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 334

 Score = 42.7 bits (99), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 34/200 (17%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA--TQNPSKLYLKEKTYFTTEQGIL 133
           Y AS+TK+MT  +  E +Q     LN +  V++ +    +  S   LK       E  + 
Sbjct: 107 YQASITKVMTALVCLETVQ----DLNQEFTVTQRSMIRDEGSSSALLKVGDRLRIEDLLY 162

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            ++  S ND + A  E  +GS + F   M+  A ++G+  T + N +GL   +  TTA D
Sbjct: 163 GMLLPSGNDAAVAVAEASAGSVEAFVKKMNETALRLGLTGTHFVNPNGLPSDDHYTTAYD 222

Query: 194 QAILGILLRKNFPQYYKYFSIRKF--------RYRNR-------IITNHNKLLNKMHN-- 236
             +L         +  KY   RK          YR++       I    N+ +       
Sbjct: 223 IYLL-------LAEAMKYEEFRKIVGSTSYTVNYRDKNNVPKTQIWKGSNQFMTGERETP 275

Query: 237 ----IDGIKTGYTRNSGFNI 252
               + G KTG T+ +G+ +
Sbjct: 276 EDLKVLGGKTGTTKKAGYCL 295


>gi|56807794|ref|ZP_00365645.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Streptococcus
           pyogenes M49 591]
          Length = 267

 Score = 42.7 bits (99), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 25/157 (15%)

Query: 139 SANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGLHDK------------ 185
           S+N  +     ++S ++   F   ++  AK++GM NT + NASG   +            
Sbjct: 8   SSNAATVMIANYLSNNDASAFIDRINATAKQLGMTNTHFSNASGAAAQAFQGYYNPTKYD 67

Query: 186 ---NQITTARDQAILGILLRKNFPQYYKY------FSIRKFRYRNRIIT-NHNKLLNK-- 233
              + ITTARD + L     K +P+   +       ++    Y     T NH+   N+  
Sbjct: 68  LSASNITTARDLSKLLYAFLKKYPEIISFTNKSVVHTMVGTPYEEEFHTYNHSLPDNQFG 127

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           M  +DG+KTG + ++ FN + + +     ++ +VMG+
Sbjct: 128 MKGVDGLKTGSSPSAAFNAMITAKRGKTRLITIVMGV 164


>gi|34498608|ref|NP_902823.1| D-alanyl-D-alanine-endopeptidase [Chromobacterium violaceum ATCC
           12472]
 gi|34104462|gb|AAQ60820.1| D-alanyl-D-alanine-endopeptidase [Chromobacterium violaceum ATCC
           12472]
          Length = 289

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 99/231 (42%), Gaps = 30/231 (12%)

Query: 75  RYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQ 130
           R P AS++K+MT  ++ +        L+  + VS           S+L +   T    E 
Sbjct: 64  RMPIASISKLMTAMVLLD----SGAPLDQMVTVSDAEIDRVKHTTSRLAVG-TTLSRQEM 118

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +LAL++      +T       G    F   M+ KA+ +GM  T++ + +GL  +N  +T
Sbjct: 119 LLLALMSSENRAAATLARTAFPGGTPIFVERMNLKARSLGMTETVFHDPTGLDVRN-TST 177

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKF---------RYRNRIIT--NHNKLLNKM-HNID 238
           A D       L K      KY  IR+F           RNR++   N N L+ +   +I 
Sbjct: 178 AAD-------LAKMVQAAQKYPLIREFTTTERHQIVSVRNRVLQYKNSNALVREGDWDIA 230

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
             KTGY + +G  +V        P++ V++    S  R   A + I ++LE
Sbjct: 231 VQKTGYIQEAGRCMVLQATVGSQPLIFVLLDAGASSARANDA-KNIRTWLE 280


>gi|325577791|ref|ZP_08148066.1| serine-type D-Ala-D-Ala carboxypeptidase [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160536|gb|EGC72662.1| serine-type D-Ala-D-Ala carboxypeptidase [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 291

 Score = 42.7 bits (99), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 32/192 (16%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-------EKTYFTTEQ 130
           AS+TK+MT  +  E  ++             TA+  +    Y+K       + T  +  +
Sbjct: 44  ASVTKLMTANVFLENNRNANC----------TASITDDDYDYIKGTHTKLPKYTPISCNE 93

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            + A++  S N  + A       S  +F   M+ KA+++GM++T + ++SGL D N I++
Sbjct: 94  LLKAMLVHSDNYAAHALSRSAGMSRLQFIQKMNEKARELGMRSTRFSDSSGLSDSN-ISS 152

Query: 191 ARDQAILG--------ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIK 241
           A D   L         I    N P  +     R        + N NKL+  ++ +    K
Sbjct: 153 AMDLVKLAKYSLNKTQIKNLSNMPSAFIQAGGRSV-----FVKNTNKLVREEVFDAAVNK 207

Query: 242 TGYTRNSGFNIV 253
           TGY R SG+N+V
Sbjct: 208 TGYIRESGYNLV 219


>gi|17546328|ref|NP_519730.1| D-alanyl-D-alanine-endopeptidase (penicillin-binding protein)
           [Ralstonia solanacearum GMI1000]
 gi|17428625|emb|CAD15311.1| putative d-alanyl-d-alanine-endopeptidase (penicillin-binding
           protein) [Ralstonia solanacearum GMI1000]
          Length = 375

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 11/140 (7%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MT  ++ +  Q     L  +I        +N     L+  T  T E  +L  + 
Sbjct: 128 ASITKLMTALVVTDAHQPMDELL--EITEDDRDFERNTGS-RLRYGTMLTREDLLLLALM 184

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S N  ++A G    G    F   M+ KA ++GM +T Y +++GL   N +++A D    
Sbjct: 185 SSENRAASALGRSYPGGRPAFVAAMNRKAHELGMTDTHYVDSNGLSSSN-VSSAMD---- 239

Query: 198 GILLRKNFPQYYKYFSIRKF 217
              L K     YK   IR+F
Sbjct: 240 ---LAKIVMAAYKVPLIRQF 256


>gi|308232419|ref|ZP_07415998.2| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu001]
 gi|308371314|ref|ZP_07424530.2| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu003]
 gi|308372505|ref|ZP_07428899.2| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu004]
 gi|308373707|ref|ZP_07433402.2| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu005]
 gi|308376077|ref|ZP_07445998.2| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu007]
 gi|308378277|ref|ZP_07482095.2| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu009]
 gi|308213997|gb|EFO73396.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu001]
 gi|308329169|gb|EFP18020.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu003]
 gi|308333002|gb|EFP21853.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu004]
 gi|308336624|gb|EFP25475.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu005]
 gi|308344359|gb|EFP33210.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu007]
 gi|308353021|gb|EFP41872.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu009]
          Length = 392

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 86/211 (40%), Gaps = 24/211 (11%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++   +   +    R+ PAS+ K     ++        L LN  +  +   A    
Sbjct: 85  LVADLDSGAVIAARDPHGRHRPASVIK-----VLVAMASINTLTLNKSVAGTADDAAVEG 139

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG---SEKKFAILMSNKAKKIGMQ 172
           +K+ +     +T  Q +  L+  S ND + A    + G   + +K  +L    A K+G +
Sbjct: 140 TKVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLL----AAKLGGR 195

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYRNRI------I 224
           +T     SGL      T+A D   +G+  R  +  P +    + R F +          +
Sbjct: 196 DTRVATPSGLDGPGMSTSAYD---IGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYEL 252

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
            N N+LL       G KTGYT ++G   V +
Sbjct: 253 ENDNQLLYNYPGALGGKTGYTDDAGQTFVGA 283


>gi|152978447|ref|YP_001344076.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Actinobacillus
           succinogenes 130Z]
 gi|150840170|gb|ABR74141.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Actinobacillus
           succinogenes 130Z]
          Length = 296

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 32/200 (16%)

Query: 73  EPRYP------ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK----- 121
           E R P      AS+TK+MT  +  E  +++            TA+  +    Y+K     
Sbjct: 37  ESRSPYSVQPIASVTKLMTANVFLENNRNRNC----------TASITDEDNDYIKGTHTR 86

Query: 122 --EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
             + T     + + A++  S N  + A       S  +F   M+ KAK++GM++T + ++
Sbjct: 87  LPKYTPMPCNELLKAMLVHSDNYAAHALARSAGMSRIRFIGKMNEKAKELGMKSTRFTDS 146

Query: 180 SGLHDKNQITTARDQAILG-ILLRKNFPQYYKYFSIRKFRY--RNRIITNHNKLLNKMHN 236
           SGL   N +++  D   L    L K   Q     S    R   RN  + N NKL+ +   
Sbjct: 147 SGL-SSNNVSSVMDLVKLAKYSLNKPQIQALSDTSAAYIRAGKRNVFVKNTNKLVRE--E 203

Query: 237 IDGI---KTGYTRNSGFNIV 253
           I G    KTGY R SG+N+V
Sbjct: 204 IFGAALNKTGYIRESGYNLV 223


>gi|256848334|ref|ZP_05553777.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714932|gb|EEU29910.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus coleohominis
           101-4-CHN]
          Length = 417

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 110/255 (43%), Gaps = 35/255 (13%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPR--YPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           ++L AK   ++I +D    Q+  F+Q+  +    AS TK++TL +I + +   KL  N +
Sbjct: 35  TKLEAK---AAITMDAQTGQIL-FQQNANQKLAVASCTKILTLAVIEQDIADGKLSWNQK 90

Query: 104 IP----VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           I     V+KT+   + S + LK    +T      +++  SA+  + A     +GS   F 
Sbjct: 91  IKINRKVAKTSTDWHFSNVELKAGHRYTVRSLCESMMIVSADGSAEALALASAGSTAAFN 150

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHD----KNQIT----------TARDQAILGILLRKNF 205
             M   AKK G+ +    N  GL +     N I           +A+D A++   L   +
Sbjct: 151 KKMQAVAKKAGVHDAKIYNMIGLSNGELGSNGIKGVSKKAENAFSAKDMALISRYLVTKY 210

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKL-LNKM----------HNIDGIKTGYTRNSGFNIVT 254
           P            ++     ++N L +N M            +DG+KTG T  +G   V 
Sbjct: 211 PDALNITKATNVEFKVDDKQSYNMLNINGMLPNNGNAPKNGTMDGLKTGSTDKAGNCFVG 270

Query: 255 SLRYKDDPIVAVVMG 269
           +  + +  ++ VV+G
Sbjct: 271 TGVFNNRRLITVVLG 285


>gi|89074889|ref|ZP_01161339.1| Hypothetical D-alanyl-D-alanine endopeptidase [Photobacterium sp.
           SKA34]
 gi|89049286|gb|EAR54849.1| Hypothetical D-alanyl-D-alanine endopeptidase [Photobacterium sp.
           SKA34]
          Length = 298

 Score = 42.7 bits (99), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 18/167 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI---PVSKTA 110
           S+ VID++  +    K    + P ASLTK+MT  +  +     KL L+ ++   P  K  
Sbjct: 38  SNYVIDLSTGKTLYRKNSNVKMPIASLTKLMTAMVTLD----AKLPLDEKLTFTPTDKKH 93

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                +++ + + T    E   +AL++      +T  G +  G  K F   M+ KAK +G
Sbjct: 94  MYNTYTRIRM-DSTLSRGETIHIALMSSENLAAATLAGNY-PGGYKAFIKAMNRKAKSLG 151

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           M NT + ++SGL   N  +TA D A       K     YKY  IRK+
Sbjct: 152 MTNTHFVDSSGLDPHNH-STASDVA-------KMVRAAYKYPEIRKY 190


>gi|300691350|ref|YP_003752345.1| D-alanyl-D-alanine carboxypeptidase [Ralstonia solanacearum PSI07]
 gi|299078410|emb|CBJ51061.1| D-Alanyl-D-alanine carboxypeptidase [Ralstonia solanacearum PSI07]
          Length = 374

 Score = 42.7 bits (99), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 25/147 (17%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-------LKEKTYFTTEQ 130
           AS+TK+MT  ++ +          T  P+ +        + Y       L+  T  T E 
Sbjct: 129 ASITKLMTALVVTD----------THQPMDELLEITEDDRDYERNTGSRLRYGTMLTRED 178

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +L  +  S N  ++A G    G    F   M+ KA ++GM +T Y +++GL   N +++
Sbjct: 179 LLLLALMSSENRAASALGRNYPGGRPAFVAAMNRKAHELGMNDTHYVDSNGLSSSN-VSS 237

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKF 217
           A D       L K     YK   IR+F
Sbjct: 238 ATD-------LAKIVMAAYKVPLIRQF 257


>gi|297201047|ref|ZP_06918444.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sviceus ATCC
           29083]
 gi|197712169|gb|EDY56203.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sviceus ATCC
           29083]
          Length = 277

 Score = 42.7 bits (99), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 98/233 (42%), Gaps = 24/233 (10%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFT 127
           D  R   S TK+MT  ++   L    L+L+ ++ + K  +      N S+ +L      T
Sbjct: 42  DTKRSTGSTTKIMTAKVV---LAQSNLNLDKKVTIQKAYSDYIVANNASQAHLIVGDKVT 98

Query: 128 TEQGILALITRSANDVSTAFGE-FISGSE-----KKFAILMSNKAKKIGMQNTIYKNASG 181
             Q +  L+  S  D + A  + + +GS      K F   M+  A  +G++NT + +  G
Sbjct: 99  VRQLLYGLMLPSGCDAAYALADTYGTGSTRAARVKSFISKMNQAATSLGLRNTHFDSFDG 158

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-------NRII---TNHNKLL 231
           + + N  +T RD   +     KN   +      +K+  +        R +   TN N LL
Sbjct: 159 IGNGNNYSTPRDLTKIASSAMKN-ATFRTVVKTKKYTAKTITKTGSTRTMAPWTNTNGLL 217

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +      G+KTG    + + +V +       ++  V+   +  +R+  A +L+
Sbjct: 218 SSYSGTIGVKTGSGPEAKYCLVVAATRNGKTVIGTVLASTSITQREADAKKLL 270


>gi|270260850|ref|ZP_06189123.1| putative endopeptidase [Serratia odorifera 4Rx13]
 gi|270044334|gb|EFA17425.1| putative endopeptidase [Serratia odorifera 4Rx13]
          Length = 309

 Score = 42.4 bits (98), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 95/216 (43%), Gaps = 31/216 (14%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S++V+D+  ++ M     DE    AS+TK+MT  +           L+  +P+ +  +  
Sbjct: 45  SAMVVDMQTHKVMYARNPDEVVPIASITKLMTAMVT----------LDAHLPLDEMLSVD 94

Query: 113 --QNP------SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
             Q P      S++ L  +   T +  +L  +  S N  + +      G    F   M+ 
Sbjct: 95  IHQTPEMKGVYSRVRLNSE--ITRKDMLLLALMSSENRAAASLAHHYPGGYGAFIKAMNA 152

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS----IRKFRYR 220
           KA+ +GM NT Y   +GL   N ++TARD   L ++  K +P   +  +    +  F+  
Sbjct: 153 KARALGMTNTHYVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTTERMASFKDP 210

Query: 221 NRIIT--NHNKLL-NKMHNIDGIKTGYTRNSGFNIV 253
           N  +   N N L+ N   NI   KTG+T  +G  + 
Sbjct: 211 NYTLPFRNTNHLVYNPKWNIQLTKTGFTNEAGHCLA 246


>gi|111023206|ref|YP_706178.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus jostii RHA1]
 gi|110822736|gb|ABG98020.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus jostii RHA1]
          Length = 431

 Score = 42.4 bits (98), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 91/232 (39%), Gaps = 22/232 (9%)

Query: 33  KILFLSIIMISMASELHAKPKYSS-IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIF 90
           K+    +I+   A  L A    S  +V D++   +   K    RY PAS  KM+   +  
Sbjct: 85  KLAECGVILPDDAPALPADIAASGWVVADIDTGDVLAAKDPHGRYRPASTIKMLLALVAL 144

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             L   K    T    ++ AA +  S + + +   +T  Q +  L+  S ND +      
Sbjct: 145 SELDLDK----TVTATAEDAAVEG-SAVGIGKNGQYTNRQLMQGLVMASGNDAAHLLARQ 199

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN------ 204
           + G +      M++ A  +G  +T     SGL      ++  D A++     KN      
Sbjct: 200 LGG-DAATVDKMNHLADTLGAHDTRTATPSGLDGPGMSSSPFDLALIFHTAMKNPTFAEL 258

Query: 205 -------FPQYYKYFSIRKFRYRNRI-ITNHNKLLNKMHNIDGIKTGYTRNS 248
                  FP + K  +I   + R    + N N+LL       G KTG+T ++
Sbjct: 259 ISTETVQFPGFPKDPAIPDDQDRPPFALANDNQLLYNYDGALGGKTGFTDDA 310


>gi|300703920|ref|YP_003745522.1| d-alanyl-d-alanine carboxypeptidase [Ralstonia solanacearum
           CFBP2957]
 gi|299071583|emb|CBJ42907.1| D-Alanyl-D-alanine carboxypeptidase [Ralstonia solanacearum
           CFBP2957]
          Length = 375

 Score = 42.4 bits (98), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 25/147 (17%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-------LKEKTYFTTEQ 130
           AS+TK+MT  ++ +          T  P+ +        + Y       L+  T  T E 
Sbjct: 130 ASITKLMTALVVTD----------THQPMDELLEITEDDRDYERNTGSRLRYGTMLTRED 179

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +L  +  S N  ++A G    G    F   M+ KA ++GM +T Y +++GL   N +++
Sbjct: 180 LLLLALMSSENRAASALGRSYPGGRPAFVAAMNRKAHELGMNDTHYVDSNGLSSSN-VSS 238

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKF 217
           A D       L K     YK   IR+F
Sbjct: 239 AMD-------LAKIVMAAYKVPLIRQF 258


>gi|83745865|ref|ZP_00942922.1| D-alanyl-D-alanine-endopeptidase [Ralstonia solanacearum UW551]
 gi|207742996|ref|YP_002259388.1| d-alanyl-d-alanine-endopeptidase (penicillin-binding protein)
           [Ralstonia solanacearum IPO1609]
 gi|83727555|gb|EAP74676.1| D-alanyl-D-alanine-endopeptidase [Ralstonia solanacearum UW551]
 gi|206594393|emb|CAQ61320.1| d-alanyl-d-alanine-endopeptidase (penicillin-binding protein)
           [Ralstonia solanacearum IPO1609]
          Length = 392

 Score = 42.4 bits (98), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 25/147 (17%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-------LKEKTYFTTEQ 130
           AS+TK+MT  ++ +  Q          P+ +        + Y       L+  T  T E 
Sbjct: 147 ASITKLMTALVVTDAHQ----------PMDELLEITEDDRDYERNTGSRLRYGTMLTRED 196

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +L  +  S N  ++A G    G    F   M+ KA ++GM +T Y +++GL   N +++
Sbjct: 197 LLLLALMSSENRAASALGRSYPGGRPAFVAAMNRKAHELGMNDTHYVDSNGLSSSN-VSS 255

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKF 217
           A D       L K     YK   IR+F
Sbjct: 256 AMD-------LSKIVMAAYKVPLIRQF 275


>gi|221209869|ref|ZP_03582850.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           multivorans CGD1]
 gi|221170557|gb|EEE03023.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           multivorans CGD1]
          Length = 364

 Score = 42.4 bits (98), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 10/146 (6%)

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           +AL++ S N  + A      G    F   M+ +A+++GM++T ++  +GL   N ++TA 
Sbjct: 203 IALMS-SENRAAAALSRDYPGGRAAFVKAMNREARRLGMRHTHFREPTGLSPHN-VSTAE 260

Query: 193 DQAILGILLRKNFPQYYKYFSI-RKFRYR----NRIITNHNKLLN-KMHNIDGIKTGYTR 246
           D A L     ++     +YFS  R    R      +  N + L+  +   I   KTG+  
Sbjct: 261 DLARLVDAAAQD--PLIRYFSTDRSTTVRPGDGELLYVNSDPLVRYRRLPIRLQKTGFIN 318

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPT 272
            SG  +V  +R K      V++G PT
Sbjct: 319 ESGHGVVMRMRVKGRRTTVVLLGAPT 344


>gi|161520620|ref|YP_001584047.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           multivorans ATCC 17616]
 gi|189353194|ref|YP_001948821.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans ATCC
           17616]
 gi|160344670|gb|ABX17755.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           multivorans ATCC 17616]
 gi|189337216|dbj|BAG46285.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans ATCC
           17616]
          Length = 364

 Score = 42.4 bits (98), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 10/146 (6%)

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           +AL++ S N  + A      G    F   M+ +A+++GM++T ++  +GL   N ++TA 
Sbjct: 203 IALMS-SENRAAAALSRDYPGGRAAFVKAMNREARRLGMRHTHFREPTGLSPHN-VSTAE 260

Query: 193 DQAILGILLRKNFPQYYKYFSI-RKFRYR----NRIITNHNKLLN-KMHNIDGIKTGYTR 246
           D A L     ++     +YFS  R    R      +  N + L+  +   I   KTG+  
Sbjct: 261 DLARLVDAAAQD--PLIRYFSTDRSTTVRPGDGELLYVNSDPLVRYRRLPIRLQKTGFIN 318

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPT 272
            SG  +V  +R K      V++G PT
Sbjct: 319 ESGHGVVMRMRVKGRRTTVVLLGAPT 344


>gi|221196175|ref|ZP_03569222.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           multivorans CGD2M]
 gi|221202849|ref|ZP_03575868.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           multivorans CGD2]
 gi|221176783|gb|EEE09211.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           multivorans CGD2]
 gi|221182729|gb|EEE15129.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           multivorans CGD2M]
          Length = 364

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 10/146 (6%)

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           +AL++ S N  + A      G    F   M+ +A+++GM++T ++  +GL   N ++TA 
Sbjct: 203 IALMS-SENRAAAALSRDYPGGRAAFVKAMNREARRLGMRHTHFREPTGLSPHN-VSTAE 260

Query: 193 DQAILGILLRKNFPQYYKYFSI-RKFRYR----NRIITNHNKLLN-KMHNIDGIKTGYTR 246
           D A L     ++     +YFS  R    R      +  N + L+  +   I   KTG+  
Sbjct: 261 DLARLVDAAAQD--PLIRYFSTDRSTTVRPGDGELLYVNSDPLVRYRRLPIRLQKTGFIN 318

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPT 272
            SG  +V  +R K      V++G PT
Sbjct: 319 ESGHGVVMRMRVKGRRTTVVLLGAPT 344


>gi|262040149|ref|ZP_06013402.1| penicillin-binding protein 7 [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259042502|gb|EEW43520.1| penicillin-binding protein 7 [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 318

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 98/230 (42%), Gaps = 29/230 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+   ++    Q +   P AS+TK+MT  ++ +      L L+  + V   + T 
Sbjct: 45  SAMIVDLATKKIIYASQPDLVRPMASITKVMTAMVVLD----AHLPLDEMLTVD-ISHTP 99

Query: 114 NPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +Y  ++  +  +    +L  +  S N  + +      G    F   M+ KA+ +GM
Sbjct: 100 EMKGIYSRVRLNSQISRRDMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAQALGM 159

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-------------FR 218
            +T Y   +GL   N ++TARD   L ++  + +P   +  + ++             FR
Sbjct: 160 THTRYVEPTGLSVHN-VSTARDLTKL-LIASEQYPLIGQLSTTKEETATFAHPAYSLPFR 217

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             N ++   N       NI   KTG+T  +G  ++        P+  VVM
Sbjct: 218 NTNHLVYRDN------WNIQLTKTGFTNAAGHCLIMRTVINQRPVALVVM 261


>gi|325982954|ref|YP_004295356.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Nitrosomonas
           sp. AL212]
 gi|325532473|gb|ADZ27194.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Nitrosomonas
           sp. AL212]
          Length = 275

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 21/143 (14%)

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S N  + A G    G  + F   M+ KAK++GM ++ +   +GL   N + TARD     
Sbjct: 113 SENRAAAALGRTYPGGTQAFVNAMNIKAKQMGMISSRFVEPTGL-SSNNVATARD----- 166

Query: 199 ILLRKNFPQYYKYFSIRKFRY-----------RNRI-ITNHNKLLNKMH-NIDGIKTGYT 245
             L K      +Y  IR+F             R ++   N N L+   +  ID  KTGY 
Sbjct: 167 --LAKLVAASNRYTVIREFSTASQHSVSPGNKRGQLQYVNSNSLVRSQNWTIDVSKTGYL 224

Query: 246 RNSGFNIVTSLRYKDDPIVAVVM 268
             +G  +V   +    P+V V++
Sbjct: 225 NEAGRCLVMHAKISGQPVVIVLL 247


>gi|152971112|ref|YP_001336221.1| D-alanyl-D-alanine endopeptidase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150955961|gb|ABR77991.1| D-alanyl-D-alanine endopeptidase; penicillin-binding proteins 7 and
           8 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 316

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 98/230 (42%), Gaps = 29/230 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+   ++    Q +   P AS+TK+MT  ++ +      L L+  + V   + T 
Sbjct: 43  SAMIVDLATKKIIYASQPDLVRPMASITKVMTAMVVLD----AHLPLDEMLTVD-ISHTP 97

Query: 114 NPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +Y  ++  +  +    +L  +  S N  + +      G    F   M+ KA+ +GM
Sbjct: 98  EMKGIYSRVRLNSQISRRDMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAQALGM 157

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-------------FR 218
            +T Y   +GL   N ++TARD   L ++  + +P   +  + ++             FR
Sbjct: 158 THTRYVEPTGLSVHN-VSTARDLTKL-LIASEQYPLIGQLSTTKEETATFAHPAYSLPFR 215

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             N ++   N       NI   KTG+T  +G  ++        P+  VVM
Sbjct: 216 NTNHLVYRDN------WNIQLTKTGFTNAAGHCLIMRTVINQRPVALVVM 259


>gi|329999103|ref|ZP_08303309.1| D-alanyl-D-alanine endopeptidase [Klebsiella sp. MS 92-3]
 gi|328538464|gb|EGF64581.1| D-alanyl-D-alanine endopeptidase [Klebsiella sp. MS 92-3]
          Length = 318

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 98/230 (42%), Gaps = 29/230 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+   ++    Q +   P AS+TK+MT  ++ +      L L+  + V   + T 
Sbjct: 45  SAMIVDLATKKIIYASQPDLVRPMASITKVMTAMVVLD----AHLPLDEMLTVD-ISHTP 99

Query: 114 NPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +Y  ++  +  +    +L  +  S N  + +      G    F   M+ KA+ +GM
Sbjct: 100 EMKGIYSRVRLNSQISRRDMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAQALGM 159

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-------------FR 218
            +T Y   +GL   N ++TARD   L ++  + +P   +  + ++             FR
Sbjct: 160 THTRYVEPTGLSVHN-VSTARDLTKL-LIASEQYPLIGQLSTTKEETATFAHPAYSLPFR 217

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             N ++   N       NI   KTG+T  +G  ++        P+  VVM
Sbjct: 218 NTNHLVYRDN------WNIQLTKTGFTNAAGHCLIMRTVINQRPVALVVM 261


>gi|299066620|emb|CBJ37810.1| D-Alanyl-D-alanine carboxypeptidase [Ralstonia solanacearum CMR15]
          Length = 392

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 11/140 (7%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MT  ++ +  Q     L  +I        +N     L+  T  T E  +L  + 
Sbjct: 145 ASITKLMTALVVTDTHQPMDELL--EITEDDRDFERNTGS-RLRYGTMLTREDLLLLALM 201

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S N  ++A G    G    F   M+ KA ++GM +T Y +++GL   N +++A D    
Sbjct: 202 SSENRAASALGRSYPGGRPAFVAAMNRKAHELGMTDTHYVDSNGLSSSN-VSSAMD---- 256

Query: 198 GILLRKNFPQYYKYFSIRKF 217
              L K     YK   IR+F
Sbjct: 257 ---LAKIVMAAYKVPLIRQF 273


>gi|207724146|ref|YP_002254544.1| d-alanyl-d-alanine-endopeptidase (penicillin-binding protein)
           [Ralstonia solanacearum MolK2]
 gi|206589355|emb|CAQ36317.1| d-alanyl-d-alanine-endopeptidase (penicillin-binding protein)
           [Ralstonia solanacearum MolK2]
          Length = 431

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 11/140 (7%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MT  ++ +  Q     L  +I        +N     L+  T  T E  +L  + 
Sbjct: 147 ASITKLMTALVVTDAHQPMDELL--EITEDDRDYERNTGS-RLRYGTMLTREDLLLLALM 203

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S N  ++A G    G    F   M+ KA ++GM +T Y +++GL   N +++A D    
Sbjct: 204 SSENRAASALGRSYPGGRPAFVAAMNRKAHELGMNDTHYVDSNGLSSSN-VSSAMD---- 258

Query: 198 GILLRKNFPQYYKYFSIRKF 217
              L K     YK   IR+F
Sbjct: 259 ---LSKIVMAAYKVPLIRQF 275


>gi|171315671|ref|ZP_02904905.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ambifaria MEX-5]
 gi|171099203|gb|EDT43976.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ambifaria MEX-5]
          Length = 359

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 6/155 (3%)

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           +AL++ S N  + A      G    F   M+ +A+++GM+ T ++  +GL   N ++TA 
Sbjct: 198 IALMS-SENRAAAALSRDYPGGRAAFVKAMNREARRLGMRQTHFREPTGLSPHN-VSTAE 255

Query: 193 DQA-ILGILLRKNFPQYYKYFSIRKFRYRNR--IITNHNKLL-NKMHNIDGIKTGYTRNS 248
           D A ++G   +    +Y+   +    +  +   +  N + L+ N    I   KTG+   S
Sbjct: 256 DLARLVGAAAQDPLIRYFSTDTSTTVQAGDGELLYVNSDPLVRNGRLPIRLQKTGFINES 315

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           G  +V  +R K      V++G PT       AL++
Sbjct: 316 GHGVVMRMRVKGRRETIVLLGAPTRAGVSSDALKI 350


>gi|257487910|ref|ZP_05641951.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 191

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 11/138 (7%)

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S N  + +      G    F + M+ KAK +GM++T Y   +GL   N ++TARD   L 
Sbjct: 6   SENRAAASLAHSYPGGYPAFILAMNAKAKALGMKHTAYVEPTGLSVYN-VSTARDLTKLV 64

Query: 199 ILLRKNFPQYY-------KYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGF 250
           +  RK +P          K  + RK  Y     +N + L+ K + +I   KTG+T  +G 
Sbjct: 65  MAARK-YPMLSELSTTEQKTVTFRKPTY-TLGFSNTDHLVRKDNWDIKLTKTGFTNQAGH 122

Query: 251 NIVTSLRYKDDPIVAVVM 268
            +V      + P+  V++
Sbjct: 123 CLVLLTSMANRPVSVVIL 140


>gi|238895697|ref|YP_002920432.1| D-alanyl-D-alanine endopeptidase [Klebsiella pneumoniae NTUH-K2044]
 gi|238548014|dbj|BAH64365.1| D-alanyl-D-alanine endopeptidase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 315

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 98/230 (42%), Gaps = 29/230 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+   ++    Q +   P AS+TK+MT  ++ +      L L+  + V   + T 
Sbjct: 42  SAMIVDLATKKIIYASQPDLVRPMASITKVMTAMVVLD----AHLPLDEMLTVD-ISHTP 96

Query: 114 NPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +Y  ++  +  +    +L  +  S N  + +      G    F   M+ KA+ +GM
Sbjct: 97  EMKGIYSRVRLNSQISRRDMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAQALGM 156

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-------------FR 218
            +T Y   +GL   N ++TARD   L ++  + +P   +  + ++             FR
Sbjct: 157 THTRYVEPTGLSVHN-VSTARDLTKL-LIASEQYPLIGQLSTTKEETATFAHPAYSLPFR 214

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             N ++   N       NI   KTG+T  +G  ++        P+  VVM
Sbjct: 215 NTNHLVYRDN------WNIQLTKTGFTNAAGHCLIMRTVINQRPVALVVM 258


>gi|114321496|ref|YP_743179.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227890|gb|ABI57689.1| murein-DD-endopeptidase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 327

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 96/223 (43%), Gaps = 17/223 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +++ +D  + ++ G + D P   ASLTK+MT  ++ E      L     I   + A T+N
Sbjct: 67  AAVYLDTGE-RLVGKRADMPAPIASLTKLMTALVVVE--SGAPLDEWLTIVPRQHAVTKN 123

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
                  +      E   LAL++ S N  +        G    F   M+ KAK++GM  T
Sbjct: 124 AYSRMRVDSRLPRGELVRLALMS-SENLATYVLAHHHPGGRAAFIAAMNAKAKELGMTQT 182

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF--------RYRNRIITN 226
            + ++SGL  +N + +A D  +L +L   N  +  + +S  ++        RY  +   N
Sbjct: 183 RFVDSSGLSVEN-VASAND--LLKLLAAANEHEVIRDYSTTRYHTAHFRGPRY-TKGYAN 238

Query: 227 HNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            N L+       G+ KTGY   +G  +      +  P+  V +
Sbjct: 239 TNPLVAHSRWQVGLSKTGYLVEAGRCLAMVAEMEGRPVALVFL 281


>gi|254390349|ref|ZP_05005566.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
 gi|294813829|ref|ZP_06772472.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
 gi|197704053|gb|EDY49865.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
 gi|294326428|gb|EFG08071.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
          Length = 315

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 110/281 (39%), Gaps = 27/281 (9%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMA-SELHAKPKYSSI---VIDVNKNQMTGFK 70
           LT  + S+     + L G +L  +  + + A +     PK S     ++D+   +    K
Sbjct: 4   LTLTHTSVRRTATVVLAGGLLLTASPLTAPAHAATRPAPKISGAAGYLMDLKTGKSVFSK 63

Query: 71  QDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTY 125
            D  R   AS TK+ T   +   L +K L LN ++ V ++     A +  S   LK    
Sbjct: 64  SDSTRRQMASTTKVATAITV---LTTKGLDLNRKLTVKQSYRDYVAREKGSTADLKTGDK 120

Query: 126 FTTEQGILALITRSANDVSTAF------GEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
            T  Q + AL+  S  D + A       G   +   K F  +M+ KA  + ++NT + + 
Sbjct: 121 LTVRQLLHALMLPSGCDAAYALADAFGKGTTTAARTKSFIGMMNKKAADLKLKNTKFDSF 180

Query: 180 SGLHDKNQ-ITTARD------QAILGILLRKNFP--QYYKYFSIRKFRYRNRIITNHNKL 230
            G+    Q  TT  D       A    L R       Y+   +    + R    TN N L
Sbjct: 181 DGISPGGQNYTTPSDLTKLAKHAFSNQLFRDVVKTRTYHATATAANGKKRYYTWTNTNTL 240

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           L     + GIKTG    +G  +V +        + VV+  P
Sbjct: 241 LGSYQGMVGIKTGSGSKAGKCLVFAATRGSKTYIGVVLNGP 281


>gi|317047420|ref|YP_004115068.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pantoea sp.
           At-9b]
 gi|316949037|gb|ADU68512.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pantoea sp.
           At-9b]
          Length = 317

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 100/229 (43%), Gaps = 27/229 (11%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV--SKTAA 111
           S++++D++  ++      D  R  ASLTK+MT  ++ +     KL L+  + V  S TA 
Sbjct: 48  SAMIVDLDNGKVLFSSHPDRVRPIASLTKLMTAMVVLD----AKLPLDEMLSVDISHTAE 103

Query: 112 TQNP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   S++ L  +   +    +L  +  S N  + +      G    F   M+ KA+ +G
Sbjct: 104 MRGVFSRVKLNSE--ISRRNMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKARALG 161

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-----------FRY 219
           M +T Y   +GL   N +++A D   L +   + +P   +  + ++             +
Sbjct: 162 MTHTHYVEPTGLSIHN-VSSAEDLIKL-VKATRQYPLIGQLSTTKEDTAVFTHPSYALPF 219

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           RN   TNH    N    I   KTGYT  +G  +V      + P+  VV+
Sbjct: 220 RN---TNHLVYKNDW-RIQLTKTGYTDEAGHCLVMRTVINNRPVALVVL 264


>gi|38233244|ref|NP_939011.1| putative peptidoglycan synthesis related protein [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199503|emb|CAE49154.1| Putative peptidoglycan synthesis related protein [Corynebacterium
           diphtheriae]
          Length = 410

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 45/219 (20%), Positives = 95/219 (43%), Gaps = 14/219 (6%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D++   +   K    RY PAS+ K +   +  +     +L L+ ++ ++     Q  
Sbjct: 101 MVFDLDTGAVIATKDPHGRYRPASVIKALIALVAID-----ELDLSKKVTITNDDVNQEG 155

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S +   E   ++ +Q +  L+  S ND ++A    + G +     + ++ A+++G  +T 
Sbjct: 156 SAVGFVEGIDYSVQQLLDGLLLGSGNDAASALARALGGEDTTIKKI-NDLAQELGTVDTY 214

Query: 176 YKNASGLHDKNQITTARDQAIL------GILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
             + +GL  +   T+ RD A++        +      + Y      K     ++  ++  
Sbjct: 215 AASYTGLDAQGMSTSVRDLAVIYQAAWQNPVFADTVKKEYSELPADKTGTTFQVWNDNGI 274

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           L+N  H I G KTG+T ++    V +       I AV++
Sbjct: 275 LMNTEHGIGG-KTGFTDDAHHTFVGAKNINGRRIAAVIL 312


>gi|298245363|ref|ZP_06969169.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
           racemifer DSM 44963]
 gi|297552844|gb|EFH86709.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
           racemifer DSM 44963]
          Length = 633

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 5/146 (3%)

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S + +K+   +T ++ +  L+  S ND +    + +SG+   F   M+ +     + NT 
Sbjct: 354 SLMGVKKGETYTLKELLYGLMLVSGNDAAIVIADALSGNVPAFVAKMNQQLGTWNLHNTH 413

Query: 176 YKNASGLHDKNQITTARDQAILG-----ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           Y N  GL   N  ++A D A +G       L         Y       +    + N N+ 
Sbjct: 414 YMNPHGLIVPNHYSSAHDLAYIGRYSLSDPLIHEVSATQHYLIPGNGDHAAHDMYNGNQF 473

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L     +DG K G+     FN V S 
Sbjct: 474 LWWYPGVDGGKPGWDGEKNFNQVISC 499


>gi|115358748|ref|YP_775886.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ambifaria AMMD]
 gi|115284036|gb|ABI89552.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Burkholderia ambifaria AMMD]
          Length = 359

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 6/144 (4%)

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           +AL++ S N  + A      G    F   M+ +A+++GM+ T ++  +GL   N ++TA 
Sbjct: 198 IALMS-SENRAAAALSRDYPGGRAAFVKAMNREARRLGMRQTHFREPTGLSPHN-VSTAE 255

Query: 193 DQA-ILGILLRKNFPQYYKYFSIRKFRYRNR--IITNHNKLL-NKMHNIDGIKTGYTRNS 248
           D A ++G   +    +Y+   +    +  +   +  N + L+ N    I   KTG+   S
Sbjct: 256 DLARLVGAAAQDPLIRYFSTDTSTTVQAGDGELVYVNSDPLVRNGSLPIRLQKTGFINES 315

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPT 272
           G  +V  +R K      V++G PT
Sbjct: 316 GHGVVMRMRVKGRRETIVLLGAPT 339


>gi|116490237|ref|YP_809781.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni PSU-1]
 gi|290889619|ref|ZP_06552709.1| hypothetical protein AWRIB429_0099 [Oenococcus oeni AWRIB429]
 gi|116090962|gb|ABJ56116.1| D-Ala-D-Ala carboxypeptidase A, Serine peptidase, MEROPS family S11
           [Oenococcus oeni PSU-1]
 gi|290480817|gb|EFD89451.1| hypothetical protein AWRIB429_0099 [Oenococcus oeni AWRIB429]
          Length = 440

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 68/137 (49%), Gaps = 7/137 (5%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT--AA 111
           S++V++    Q+   K    +   AS +K++T Y++ + +   KL  N +I  ++     
Sbjct: 55  SALVVNFKSGQVIAEKNPNKKLAIASTSKLLTAYLVLKAIHEGKLSWNKKIKANQEIYQL 114

Query: 112 TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           ++NP    + L +   +T  Q + + +  S N      G+ +SG++ KFA LM+  A   
Sbjct: 115 SKNPDLMNVTLYKNGSYTIRQLMNSTLLISTNATGILLGDAVSGNQTKFAELMNKTAASF 174

Query: 170 GMQNTIYK--NASGLHD 184
           G+  + +K  NA G+ +
Sbjct: 175 GIPKSEFKFYNAVGISN 191


>gi|295102108|emb|CBK99653.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
           L2-6]
          Length = 441

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 57/127 (44%), Gaps = 3/127 (2%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQS--KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE 129
           +E  +PAS+TK+MTL +  +  Q     + L        + A  + S + L+E      +
Sbjct: 51  NEELHPASITKVMTLGLACQKAQGNWDGVKLTVSHEDVYSLAGTDSSHIALREGEEVPLQ 110

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAI-LMSNKAKKIGMQNTIYKNASGLHDKNQI 188
             +   +  SAND +    E+  G   +  +  M+ +   +G+++T + N  G+   +  
Sbjct: 111 DALYGTMIASANDGANLLAEYFGGGTIEGGVAAMNAQVAALGLEHTHFANPHGISGDDHY 170

Query: 189 TTARDQA 195
           T+  D A
Sbjct: 171 TSCYDMA 177


>gi|172063483|ref|YP_001811134.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ambifaria MC40-6]
 gi|171996000|gb|ACB66918.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ambifaria MC40-6]
          Length = 359

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 6/144 (4%)

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           +AL++ S N  + A      G    F   M+ +A+++GM++T ++  +GL   N ++TA 
Sbjct: 198 IALMS-SENRAAAALSRDYPGGRAAFVKAMNREARRLGMRHTHFREPTGLSPHN-VSTAE 255

Query: 193 DQA-ILGILLRKNFPQYYKYFSIRKFRYRNR--IITNHNKLL-NKMHNIDGIKTGYTRNS 248
           D A ++G   +    +Y+   +    +  +   +  N + L+ N    I   KTG+   S
Sbjct: 256 DLARLVGAAAQDPLIRYFSTDTSTTVQAGDGELLYVNSDPLVRNGSLPIRLQKTGFINES 315

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPT 272
           G  +V  +R K      V++G PT
Sbjct: 316 GHGVVMRMRVKGRRETIVLLGAPT 339


>gi|146620|gb|AAA66340.1| D-alanine carboxypeptidase [Escherichia coli str. K-12 substr.
           W3110]
          Length = 180

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 226 NHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N LL +   N+DGIKTG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+
Sbjct: 3   NRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLL 62

Query: 285 T 285
           T
Sbjct: 63  T 63


>gi|83032897|ref|XP_729239.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23486483|gb|EAA20804.1| Drosophila melanogaster CG2246 gene product, putative [Plasmodium
           yoelii yoelii]
          Length = 496

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 92/201 (45%), Gaps = 24/201 (11%)

Query: 7   QSSAKKTFLTYPYGSIYIQR-------NIQLMGKILFLSIIMISMASELHAKPKYSSIVI 59
           +SSAKK  +  PY +   Q        N+Q +G    ++I++ +  ++       S I +
Sbjct: 193 RSSAKKVIVVLPYLNYSRQNKHNGYFNNMQSLGA-PEIAILLQTCGAD-------SIIAV 244

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119
           D+N  ++ GF  D+  +  +L  +    +  EYL+ KKLH    +P++   A +   + +
Sbjct: 245 DLNNPRIEGFSTDQKFFQPALMNINPQSLAVEYLKKKKLHNPVIVPINIDGA-ERAKEFW 303

Query: 120 LKEKTYFTTEQGILALITRSANDV----STAFGEFISGSE---KKFAILMSNKAKKIGMQ 172
           ++ K + + + G   L++ + N +      A  E    S+    K  I+  +K     ++
Sbjct: 304 VRMKKH-SNDVGFTTLVSSTYNGMHNREEAASNESNESSKMLTNKQDIVSQDKTNNSSLK 362

Query: 173 NTIYKNASGLHDKNQITTARD 193
           ++  KN   LH+  +IT   D
Sbjct: 363 DSESKNNINLHENEKITIVGD 383


>gi|290958940|ref|YP_003490122.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei 87.22]
 gi|260648466|emb|CBG71577.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei
           87.22]
          Length = 282

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 114/277 (41%), Gaps = 29/277 (10%)

Query: 32  GKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYI 88
           G ++   ++  + A    AKP      + VI+    +  G     PR   S TK+MT  +
Sbjct: 4   GAMIATGVVGSAPAQAAVAKPTLNAKGAFVINPATGRSFGKTATTPRATGSTTKIMTAKV 63

Query: 89  IFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +   L  K L+L+ ++ V+   +        + ++L + +K   T  Q +  L+  S  D
Sbjct: 64  V---LSQKNLNLDAKVTVAGAYSDYIVKNDASSARLIVGDK--VTVRQLLYGLMLPSGCD 118

Query: 143 VSTAFGE-FISGSE-----KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            + A  + F +GS      K F   M++ AK +GM NT + +  G+ +    ++ +D   
Sbjct: 119 AAYALADKFGTGSTRAARVKSFIGKMNSTAKSLGMTNTKFDSFDGISNGTNQSSPKDLTT 178

Query: 197 LGILLRKN--------FPQYYKYFSIRKFRYRNRIITNHNK-LLNKMHNIDGIKTGYTRN 247
           L   + KN             +  + +   YR     N NK LL   +   GIKTG    
Sbjct: 179 LARSVMKNSTFKTIVKTVTTKQKVTTKSGGYRYYTWENTNKPLLTTYNGTIGIKTGSGTE 238

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           + + +V +       I   V+   ++  R   A +L+
Sbjct: 239 AKYCLVFAATRNGKTIYGTVLTATSADARLADAKKLL 275


>gi|160943144|ref|ZP_02090381.1| hypothetical protein FAEPRAM212_00629 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445613|gb|EDP22616.1| hypothetical protein FAEPRAM212_00629 [Faecalibacterium prausnitzii
           M21/2]
          Length = 447

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 35/171 (20%), Positives = 78/171 (45%), Gaps = 9/171 (5%)

Query: 34  ILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQDEPRYPAS-LTKMMTLY 87
           +  LS +++   +     P Y     S+ +++ + N +   K    +  A  LTK MTL 
Sbjct: 12  VFLLSCLVLPAGAMFDPSPVYQVQAASAYIVNTDTNIIVYDKDSTKQVSAGGLTKYMTLA 71

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           ++     + +L    Q+P + +    N +   ++    FT  + + A++TR+AN+ +   
Sbjct: 72  VLLTN-YADQLDNTFQMPFAISDYVYNTNNADMRSNETFTYREAMYAMLTRNANEAAMGV 130

Query: 148 GEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
              ++G +   +   M+  +++IG   + + +A G+ D    T A D  ++
Sbjct: 131 AYTLAGGDLDGWVAQMNTLSQRIGTTASNWTDACGI-DSGNTTCAVDMYLI 180


>gi|206563597|ref|YP_002234360.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia cenocepacia
           J2315]
 gi|198039637|emb|CAR55605.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein
           precursor) [Burkholderia cenocepacia J2315]
          Length = 360

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 6/144 (4%)

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           +AL++ S N  + A      G    F   M+ +A+++GM++T ++  +GL   N ++TA 
Sbjct: 199 IALMS-SENRAAAALSRDYPGGRVAFVKAMNREARRLGMRHTHFREPTGLSPHN-VSTAE 256

Query: 193 DQA-ILGILLRKNFPQYYKYFSIRKFRYRNR--IITNHNKLLN-KMHNIDGIKTGYTRNS 248
           D A ++G   +    +Y+        R  +   +  N + L+  +   I   KTG+   S
Sbjct: 257 DLARLVGAAAQDPLIRYFSTDLSTTVRPGDGELVYVNSDPLVRYRRLPIRLQKTGFINES 316

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPT 272
           G  +V  +R K      V++G PT
Sbjct: 317 GHGVVMRMRVKGRRETVVLLGAPT 340


>gi|118354439|ref|XP_001010482.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila]
 gi|89292249|gb|EAR90237.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila SB210]
          Length = 869

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 17/119 (14%)

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG-----------ILLRKNF 205
           +F   M+  A+K+GM+++ + N  GL  K+  +T  D + +            I   KN+
Sbjct: 283 RFVKEMNKYAQKLGMRDSQFSNCHGLASKSNRSTCEDLSKVALNIIQTPYLQQICSTKNY 342

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
            Q   Y +I+K   R     N NKLL ++ ++  G+KTG T N+G  +     Y  DPI
Sbjct: 343 -QCIIYHTIKK-DIRKAEWVNTNKLLWDETNSFKGVKTGCTDNAGPCLCV---YYKDPI 396


>gi|288934371|ref|YP_003438430.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Klebsiella
           variicola At-22]
 gi|288889100|gb|ADC57418.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Klebsiella
           variicola At-22]
          Length = 316

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 98/230 (42%), Gaps = 29/230 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+   ++    Q +   P AS+TK+MT  ++ +      L ++  + V   + T 
Sbjct: 43  SAMIVDLATKKIIYASQPDLVRPMASITKVMTAMVVLD----AHLPMDEMLTV-DISHTP 97

Query: 114 NPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +Y  ++  +  +    +L  +  S N  + +      G    F   M+ KA+ +GM
Sbjct: 98  EMKGIYSRVRLNSQISRRTMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAQALGM 157

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-------------FR 218
            +T Y   +GL   N ++TARD   L ++  + +P   +  + ++             FR
Sbjct: 158 THTRYVEPTGLSVHN-VSTARDLTKL-LIASEQYPLIGQLSTTKEETATFAHPAYSLPFR 215

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             N ++   N       NI   KTG+T  +G  ++        P+  VVM
Sbjct: 216 NTNHLVYRDN------WNIQLTKTGFTNAAGHCLIMRTVINQHPVALVVM 259


>gi|290962655|ref|YP_003493837.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei 87.22]
 gi|260652181|emb|CBG75313.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei
           87.22]
          Length = 399

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 66/164 (40%), Gaps = 15/164 (9%)

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S + +KE   +T       +   S ND        ++G  K     M  KA+ +G ++T 
Sbjct: 141 SLVGVKENNTYTVADLWRGVFLSSGNDAVRVLAS-LNGGWKATTEQMQAKARALGARDTH 199

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKY----FSIRKFRYRNRIITNHNK 229
             +  G     Q+++A D A+ G    +N  F  Y       F    + Y    I N N+
Sbjct: 200 VVSPDGYDAPGQVSSAYDLAVFGRAGLRNAEFAGYCATATATFPAGGWSYG---IQNTNR 256

Query: 230 LLNKMH-----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           LL          + G+K GYT N+G  +V + +     +V  VM
Sbjct: 257 LLTGAGVEPYPGLIGVKNGYTTNAGNTLVAAAKRGGRTLVVTVM 300


>gi|240851509|ref|ZP_04752260.1| penicillin-binding protein 7 precursor [Actinobacillus minor 202]
 gi|240310027|gb|EER48319.1| penicillin-binding protein 7 precursor [Actinobacillus minor 202]
          Length = 274

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 89/198 (44%), Gaps = 28/198 (14%)

Query: 73  EPRYP------ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEK 123
           E R P      AS+TK+MT  I   +L++ K   N     + T A  +    +   L + 
Sbjct: 33  ESRAPNSVQPIASVTKLMTANI---FLENNK---NKNCTATITEADSDFIKGTGTKLPKH 86

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
           T  + ++ + A++  S N  + A       +  +F   M+ KA+++GM++T + ++SGL 
Sbjct: 87  TPISCDELLKAMMVHSDNYAAHALSRSAGMTRPQFIQKMNEKAQQLGMRSTRFSDSSGLS 146

Query: 184 DKNQITTARDQAILG-ILLRK-------NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
             N I++A D   L    L+K       N P        R+   +N       ++ N   
Sbjct: 147 SAN-ISSAMDLVKLARYSLQKPKLQELSNTPATLVQVGKRQVFMQNTSALVREEIFNAAL 205

Query: 236 NIDGIKTGYTRNSGFNIV 253
           N    KTGY R SG+N+V
Sbjct: 206 N----KTGYIRESGYNLV 219


>gi|319442898|ref|ZP_07992054.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium variabile DSM
           44702]
          Length = 425

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 91/210 (43%), Gaps = 32/210 (15%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S ++ DV+   +   K     Y PAS+ K++ + +  +     +L ++ ++ V++  AT 
Sbjct: 114 SYVLYDVDSGNVLAAKDPYGLYRPASIIKILLVMVALD-----ELDMDQKVKVTEEMATV 168

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           + SK+ +     +T EQ +  L+  S ND + A    + G++      M + A  +G+Q 
Sbjct: 169 DGSKVGVGPGGKYTAEQLLQGLVMNSGNDAALALAGALGGTDATVE-KMQSLADSLGVQA 227

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR------------YRN 221
           T     +GL      TTA D A++          Y   F  ++ R            YR+
Sbjct: 228 TKVTTVNGLDTPEVQTTAYDLALV----------YRAAFQRQELRDLLGTEQATFPGYRD 277

Query: 222 RI---ITNHNKLLNKMHNIDGIKTGYTRNS 248
                I++ N LL       G KTG+T N+
Sbjct: 278 NPEFQISSDNGLLYDYPGTIGGKTGFTDNA 307


>gi|153853149|ref|ZP_01994558.1| hypothetical protein DORLON_00543 [Dorea longicatena DSM 13814]
 gi|149753935|gb|EDM63866.1| hypothetical protein DORLON_00543 [Dorea longicatena DSM 13814]
          Length = 189

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 10/128 (7%)

Query: 54  YSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA- 111
           +S+ + DV++ ++   ++  +  YPAS TK+MT  +  E        L+  + VS+ A  
Sbjct: 60  HSAALFDVDRKKVDFSYQMFDKIYPASTTKIMTALVALE-----NADLSDVVTVSQNADM 114

Query: 112 ---TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                + +   +K     T    +  L+  S ND +TA  E++ GS   FA +M+ +A K
Sbjct: 115 NSFAADEATCGIKAGDKITLSDLLYGLLLHSGNDNATAIAEYVGGSMDGFAEMMNKEAAK 174

Query: 169 IGMQNTIY 176
           +    T Y
Sbjct: 175 LMATGTQY 182


>gi|294637382|ref|ZP_06715676.1| penicillin-binding protein 7 [Edwardsiella tarda ATCC 23685]
 gi|291089460|gb|EFE22021.1| penicillin-binding protein 7 [Edwardsiella tarda ATCC 23685]
          Length = 309

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 95/224 (42%), Gaps = 17/224 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+N +Q+      + + P AS+TK+MT  +  +        LN  I V     T+
Sbjct: 46  SAMVMDLNTHQVIYASHPDVQVPIASITKLMTAMVALD----AHPDLNEVIAVD-IRHTK 100

Query: 114 NPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               ++  ++  +  T  + +L  +  S N  +        G    F   M+ KA+ +GM
Sbjct: 101 ELKGVFSRVRVGSEQTRREMLLLALMSSENRAAATLAHHYPGGYDAFIRAMNAKARALGM 160

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR----KFRYR--NRIIT 225
             T Y   +GL   N +++ARD   L +   K +P   +  +       FR+        
Sbjct: 161 TRTHYVEPTGLSPLN-VSSARDLVKL-LQATKRYPLISELSTTETQSVTFRHPTYTETFN 218

Query: 226 NHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           N N LL N   +I   KTG+T  +G  +         P+  VV+
Sbjct: 219 NTNHLLRNDKWDIALTKTGFTNQAGHCLAMRTVIGGRPVALVVL 262


>gi|261867997|ref|YP_003255919.1| DacC protein [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413329|gb|ACX82700.1| DacC protein [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 292

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 26/189 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-------EKTYFTTEQ 130
           AS+TK+MT  +  E+ ++ +           TA+  +    Y+K       + T  +  +
Sbjct: 44  ASVTKLMTANVFLEHNKNPRC----------TASITDDDYDYIKGTRTKLPKYTPISCRE 93

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  ++  S N  + A       +  +F   M+ KA+++GM++T + ++SGL   N +++
Sbjct: 94  LLKMMLVHSDNYAAHALSRSAGMTRLQFIGKMNEKARQLGMKSTCFSDSSGLSTHN-VSS 152

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLL-NKMHNIDGIKTGY 244
           A D   L      + P+  K FS     Y     R+  + N NKL+ ++M +    KTGY
Sbjct: 153 AMDLVKL-TKYSMSKPE-IKAFSNLSSTYVQAGKRSVFVKNTNKLVRDEMFSAAINKTGY 210

Query: 245 TRNSGFNIV 253
            R SG+N+V
Sbjct: 211 IRESGYNLV 219


>gi|306973781|ref|ZP_07486442.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu010]
 gi|307081490|ref|ZP_07490660.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu011]
 gi|308356859|gb|EFP45710.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu010]
 gi|308360815|gb|EFP49666.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu011]
          Length = 307

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 84/208 (40%), Gaps = 24/208 (11%)

Query: 60  DVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           D++   +   +    R+ PAS+ K     ++        L LN  +  +   A    +K+
Sbjct: 3   DLDSGAVIAARDPHGRHRPASVIK-----VLVAMASINTLTLNKSVAGTADDAAVEGTKV 57

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISG---SEKKFAILMSNKAKKIGMQNTI 175
            +     +T  Q +  L+  S ND + A    + G   + +K  +L    A K+G ++T 
Sbjct: 58  GVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLL----AAKLGGRDTR 113

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYRNRI------ITNH 227
               SGL      T+A D   +G+  R  +  P +    + R F +          + N 
Sbjct: 114 VATPSGLDGPGMSTSAYD---IGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELEND 170

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           N+LL       G KTGYT ++G   V +
Sbjct: 171 NQLLYNYPGALGGKTGYTDDAGQTFVGA 198


>gi|118369246|ref|XP_001017828.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila]
 gi|89299595|gb|EAR97583.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila SB210]
          Length = 978

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 63/152 (41%), Gaps = 35/152 (23%)

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG------------------- 198
           F  +M+ +A+K+ M+NT Y N  GL DK   ++A D   L                    
Sbjct: 317 FVKIMNQEAQKLQMRNTQYSNPHGLSDKGNKSSAIDYGRLCYAAMSSFALFRQVVKTPLY 376

Query: 199 ---ILLRKNFPQ-----------YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGY 244
              ILL K+  Q             K  S++    RN    N NKLL +  +  GIKTG 
Sbjct: 377 SCKILLNKDLIQNKKNSLQTPTNQNKTLSVQTM--RNAQWENTNKLLLRNSHFIGIKTGN 434

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           T N+G  + T  +     I  +V+    S++R
Sbjct: 435 TPNAGPCLATHYQKNGIDIQVIVLKCKDSEKR 466


>gi|68248967|ref|YP_248079.1| penicillin-binding protein 7-like protein [Haemophilus influenzae
           86-028NP]
 gi|68057166|gb|AAX87419.1| penicillin-binding protein 7 homolog precursor [Haemophilus
           influenzae 86-028NP]
          Length = 292

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 101/210 (48%), Gaps = 21/210 (10%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S +V D   N+ +  +  D  +  AS+TK+MT  +   +L++ K + N +I ++K    +
Sbjct: 20  SYVVYDFTHNRVLESYAPDSIQPIASVTKLMTANV---FLENNK-NPNCRIAITKEDTDR 75

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              +   L +    +  + + A++  S N  + A       S ++F   M+ KA ++GM 
Sbjct: 76  IKGTGTKLPKNIPISCNELLKAMLVHSDNYAAHALSRAAGISRRQFINKMNEKAHQLGMY 135

Query: 173 NTIYKNASGLHDKNQITTARDQAILG--------ILLRKNFPQYYKYFSIRKFRYRNRII 224
           +T + ++SGL   N I++  D   L         I L  N    Y    I+  +++   I
Sbjct: 136 STRFHDSSGLSSYN-ISSPMDLVKLAKYSLNKSDIKLLSNLSATY----IQAGKHK-LYI 189

Query: 225 TNHNKLL-NKMHNIDGIKTGYTRNSGFNIV 253
            N NKL+ +++ +    KTGY R SG+N+V
Sbjct: 190 KNTNKLVRDEIFDAAVNKTGYIRESGYNLV 219


>gi|302559594|ref|ZP_07311936.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus
           Tu4000]
 gi|302477212|gb|EFL40305.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus
           Tu4000]
          Length = 282

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 97/239 (40%), Gaps = 36/239 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV----SKTAATQNPSKLYLKEKTYFT 127
           D  R   S TK+MT  ++   L  K L+L+ ++ +    S      N S   L      T
Sbjct: 47  DTRRSTGSTTKIMTAKVV---LAQKNLNLDAKVTIQMAYSDYIVKNNASSARLIVGDKVT 103

Query: 128 TEQGILALITRSANDVSTAFGE-FISGSE-----KKFAILMSNKAKKIGMQNTIYKNASG 181
             Q +  L+  S  D + A  + F +GS      K F   M+ +A K+G++NT + +  G
Sbjct: 104 VRQLLYGLMLPSGCDAAYALADKFGTGSTRAARVKSFIGKMNAEATKMGLKNTHFDSFDG 163

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF----RYRNRII------------T 225
           +   +  +T RD       L K      K  + R      +Y  + +            T
Sbjct: 164 IGKGSNYSTPRD-------LTKIASSAMKSSTFRSIVKTKKYTAKTVTKTGSTRTMAPWT 216

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N LL+      G+KTG    + + +V +       ++  V+   ++ +R+  A +L+
Sbjct: 217 NTNTLLSSYSGTIGVKTGSGPEAKYCLVFAATRNGKTVIGTVLASSSATQRETDAKKLL 275


>gi|206580756|ref|YP_002237447.1| penicillin-binding protein 7 [Klebsiella pneumoniae 342]
 gi|290508576|ref|ZP_06547947.1| D-alanyl-D-alanine endopeptidase [Klebsiella sp. 1_1_55]
 gi|206569814|gb|ACI11590.1| penicillin-binding protein 7 [Klebsiella pneumoniae 342]
 gi|289777970|gb|EFD85967.1| D-alanyl-D-alanine endopeptidase [Klebsiella sp. 1_1_55]
          Length = 316

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 98/230 (42%), Gaps = 29/230 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D+   ++    Q +   P AS+TK+MT  ++ +      L ++  + V   + T 
Sbjct: 43  SAMIVDLATKKIIYASQPDLVRPMASITKVMTAMVVLD----AHLPMDEMLTV-DISHTP 97

Query: 114 NPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +Y  ++  +  +    +L  +  S N  + +      G    F   M+ KA+ +GM
Sbjct: 98  EMKGIYSRVRLNSQISRRTMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAQALGM 157

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-------------FR 218
            +T Y   +GL   N ++TARD   L ++  + +P   +  + ++             FR
Sbjct: 158 THTRYVEPTGLSVHN-VSTARDLTKL-LIASEQYPLIGQLSTTKEETATFAHPAYSLPFR 215

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             N ++   N       NI   KTG+T  +G  ++        P+  VVM
Sbjct: 216 NTNHLVYRDN------WNIQLTKTGFTNAAGHCLIMRTVINQRPVALVVM 259


>gi|29827852|ref|NP_822486.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces avermitilis
           MA-4680]
 gi|29604953|dbj|BAC69021.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           avermitilis MA-4680]
          Length = 388

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 15/119 (12%)

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG--ILLRKNFPQYYKY----FSIR 215
           M  KA+ +G  +T   +  G     Q ++A D AI G   L R++F +Y       F   
Sbjct: 181 MQAKARALGALDTHVVSPDGYDAPGQTSSAYDLAIFGRAGLNREDFARYCSTVDATFPGN 240

Query: 216 KFRYRNRIITNHNKLLNKMHNID------GIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              Y    I N N+LL     I       G+K GYT N+G  +V + R     +V  V+
Sbjct: 241 GGAYE---IQNTNRLLTGADGIAPYPGLIGVKNGYTSNAGNTLVAAARRGGRTLVVTVL 296


>gi|301154684|emb|CBW14147.1| D-alanyl-D-alanine endopeptidase [Haemophilus parainfluenzae T3T1]
          Length = 291

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 82/188 (43%), Gaps = 24/188 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           AS+TK+MT  +  E       + NT    S T    +    +   L + T  +  + + A
Sbjct: 44  ASVTKLMTANVFLEN------NRNTNCTASITDDDYDYIKGTHTKLPKYTPISCNELLKA 97

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           ++  S N  + A       S  +F   M+ KA+++GM++T + ++SGL D N I++  D 
Sbjct: 98  MLVHSDNYAAHALSRSAGMSRLQFIQKMNEKARELGMRSTRFSDSSGLSDSN-ISSVMDL 156

Query: 195 AILG--------ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI-KTGYT 245
             L         I    N P  +     R        + N NKL+ +      I KTGY 
Sbjct: 157 VKLAKYSLNKAQIKNLSNMPSAFIQAGGRSV-----FVKNTNKLVREEVFDAAINKTGYI 211

Query: 246 RNSGFNIV 253
           R SG+N+V
Sbjct: 212 RESGYNLV 219


>gi|301301062|ref|ZP_07207222.1| putative D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300851332|gb|EFK79056.1| putative D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 257

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNR----IITNHNKLL-NKMHNIDGIKTGY 244
           +A+D AI+   L K++P+      ++  ++ +R     +TN N+LL +    +DG+KTG 
Sbjct: 36  SAQDMAIIATKLIKDYPEILNTTKLQNVQFNDRGKTTSVTNTNRLLSDNTFQVDGLKTGT 95

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           +  +G  I  +       I+ V++G  +  +R
Sbjct: 96  SDAAGECITATTSKYGSRIITVIIGANSDSQR 127


>gi|330445937|ref|ZP_08309589.1| penicillin-binding protein 7 [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490128|dbj|GAA04086.1| penicillin-binding protein 7 [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 298

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 22/169 (13%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+ VID++  +    K    + P ASLTK+MT  +  +     KL LN ++  + T    
Sbjct: 38  SNYVIDLSTGKTLYKKNANVKMPIASLTKLMTAMVTLD----AKLPLNEKLTFTPT---- 89

Query: 114 NPSKLY-----LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
           +  ++Y     ++  +  +  + I   +  S N  +        G    F   M+ KAK 
Sbjct: 90  DKKRMYNTYTRIRMGSTLSRGETIHIALMSSENLAAATLAGNYPGGYNAFIKAMNRKAKS 149

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           +GM NT + ++SGL   N+ +TA D A       K     YKY  IRK+
Sbjct: 150 LGMTNTHFVDSSGLDPHNR-STASDVA-------KMVRAAYKYPEIRKY 190


>gi|298526808|ref|ZP_07014217.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|298496602|gb|EFI31896.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
          Length = 330

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 77/190 (40%), Gaps = 23/190 (12%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+ K     ++        L LN  +  +   A    +K+ +     +T  Q +  L+
Sbjct: 44  PASVIK-----VLVAMASINTLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLHGLL 98

Query: 137 TRSANDVSTAFGEFISG---SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
             S ND + A    + G   + +K  +L    A K+G ++T     SGL      T+A D
Sbjct: 99  MHSGNDAAYALARQLGGMPAALEKINLL----AAKLGGRDTRVATPSGLDGPGMSTSAYD 154

Query: 194 QAILGILLRKNF--PQYYKYFSIRKFRYRNRI------ITNHNKLLNKMHNIDGIKTGYT 245
              +G+  R  +  P +    + R F +          + N N+LL       G KTGYT
Sbjct: 155 ---IGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQLLYNYPGALGGKTGYT 211

Query: 246 RNSGFNIVTS 255
            ++G   V +
Sbjct: 212 DDAGQTFVGA 221


>gi|182437561|ref|YP_001825280.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178466077|dbj|BAG20597.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 311

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 95/231 (41%), Gaps = 21/231 (9%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFT 127
           D  R   S TK+MT  ++   L  K ++L +++ V K  +     +N S   L      T
Sbjct: 78  DTRRSTGSTTKIMTALVV---LSQKNVNLKSKVTVQKAYSDYIVKKNASSARLIVGDKPT 134

Query: 128 TEQGILALITRSANDVSTAFGE-FISGSE-----KKFAILMSNKAKKIGMQNTIYKNASG 181
             Q +  L+  S  D + A  + F SG       K F   M+  AK + ++NT + +  G
Sbjct: 135 VGQLLYGLMLPSGCDAAYALADKFGSGKTRAARVKSFIGKMNATAKSLKLKNTHFDSFDG 194

Query: 182 LHDKNQITTARDQAILGILLRKN--FPQYYKYFSIRK------FRYRNRIITNHNKLLNK 233
           +   N  +T RD   +     KN  F    K  S ++        YR     N NK+L+ 
Sbjct: 195 IGGGNNYSTPRDLTKIASKAMKNATFRSIVKTKSTKQKVTTKSGGYRYMSWNNTNKMLSS 254

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                G+KTG    + + +V +   K   ++  V+   +   R   A +L+
Sbjct: 255 YSGDIGVKTGSGPTAKYCLVFAATRKGKTVIGTVLTSSSEANRTADAKKLM 305


>gi|289805917|ref|ZP_06536546.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 169

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 33/50 (66%)

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N+DGIKTG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T
Sbjct: 3   NVDGIKTGHTSKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLT 52


>gi|167465655|ref|ZP_02330744.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 275

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 73/147 (49%), Gaps = 27/147 (18%)

Query: 165 KAKKIGM-QNTIYKNASGLH------------DKNQITTARDQAILGILLRKNFPQYYKY 211
           KAK++G+ +   + NA+GL             +   + TARD AIL   +  + PQ  ++
Sbjct: 1   KAKELGLSEGAHFINATGLTRADLGQYAPKNIEGETMMTARDAAILARHIVLDHPQVLEF 60

Query: 212 F--SIRKFRYRNRI-ITNHNKLL--NKMH---------NIDGIKTGYTRNSGFNIVTSLR 257
              + +K R  ++  + N N +L  NK +          +DG+KTG+T  +G+    + +
Sbjct: 61  TKTTSKKLRETDKTPMINFNWMLEGNKGNINFKPYAYDGLDGLKTGHTNEAGYCFTGTAQ 120

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELI 284
             D  +++VVMG  +  +R Q+  +++
Sbjct: 121 RGDMRLISVVMGTNSEPKRFQETRKVL 147


>gi|170700087|ref|ZP_02891109.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ambifaria IOP40-10]
 gi|170135001|gb|EDT03307.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ambifaria IOP40-10]
          Length = 359

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 6/155 (3%)

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           +AL++ S N  + A      G    F   M+ +A+++GM+ T ++  +GL   N ++TA 
Sbjct: 198 IALMS-SENRAAAALSRDYPGGRAAFVKAMNREARRLGMRQTHFREPTGLSPHN-VSTAE 255

Query: 193 DQA-ILGILLRKNFPQYYKYFSIRKFRYRNR--IITNHNKLLNKMH-NIDGIKTGYTRNS 248
           D A ++G   +    +Y+   +    +  +   +  N + L+      I   KTG+   S
Sbjct: 256 DLARLVGAAAQDPLIRYFSTDTSTTVQAGDGELLYVNSDPLVRSGSLPIRLQKTGFINES 315

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           G  +V  +R K      V++G PT       AL++
Sbjct: 316 GHGVVMRMRVKGRRETIVLLGAPTRAGVSSDALKI 350


>gi|326778216|ref|ZP_08237481.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces cf. griseus
           XylebKG-1]
 gi|326658549|gb|EGE43395.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces cf. griseus
           XylebKG-1]
          Length = 299

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 95/231 (41%), Gaps = 21/231 (9%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFT 127
           D  R   S TK+MT  ++   L  K ++L +++ V K  +     +N S   L      T
Sbjct: 66  DTRRSTGSTTKIMTALVV---LSQKNVNLKSKVTVQKAYSDYIVKKNASSARLIVGDKPT 122

Query: 128 TEQGILALITRSANDVSTAFGE-FISGSE-----KKFAILMSNKAKKIGMQNTIYKNASG 181
             Q +  L+  S  D + A  + F SG       K F   M+  AK + ++NT + +  G
Sbjct: 123 VGQLLYGLMLPSGCDAAYALADKFGSGKTRAARVKSFIGKMNATAKSLKLKNTHFDSFDG 182

Query: 182 LHDKNQITTARDQAILGILLRKN--FPQYYKYFSIRK------FRYRNRIITNHNKLLNK 233
           +   N  +T RD   +     KN  F    K  S ++        YR     N NK+L+ 
Sbjct: 183 IGGGNNYSTPRDLTKIASKAMKNATFRSIVKTKSTKQKVTTKSGGYRYMSWNNTNKMLSS 242

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                G+KTG    + + +V +   K   ++  V+   +   R   A +L+
Sbjct: 243 YSGDIGVKTGSGPTAKYCLVFAATRKGKTVIGTVLTSSSEANRTADAKKLM 293


>gi|313115459|ref|ZP_07800926.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622226|gb|EFQ05714.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 446

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 80/169 (47%), Gaps = 14/169 (8%)

Query: 34  ILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQDEPRYPAS-LTKMMTLY 87
           +LF S +++   +     P Y     S+ +++ + N +   K    +  A  LTK MT+ 
Sbjct: 13  VLF-SCLVLPAGAMFDPTPVYQVQAQSAYIVNTDTNIIVYDKDSTKQVSAGGLTKYMTIA 71

Query: 88  IIFEYLQSKKLHLNT--QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           ++   L +   HL+   Q+P + +    N +   ++    FT  + + A++TR+AN+ + 
Sbjct: 72  LL---LTNYADHLDDTFQMPFAISDYVYNTNNADMRSNETFTYREAMYAMLTRNANEAAM 128

Query: 146 AFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
                +SG +   +   M+  +++IG   + + +A G+   N +T A D
Sbjct: 129 GLAYALSGGDLASWVSQMNILSQRIGTTGSTWTDACGISSGN-VTCAVD 176


>gi|330878883|gb|EGH13032.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 181

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 11/124 (8%)

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY--- 209
           G    F + M+ KAK +GM++T Y   +GL   N ++TARD   L +  RK +P      
Sbjct: 10  GGYPAFILAMNAKAKALGMKHTAYVEPTGLSVYN-VSTARDLTKLVMAARK-YPMLSELS 67

Query: 210 ----KYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
               K  + RK  Y     +N + L+ K + +I   KTG+T  +G  +V      + P+ 
Sbjct: 68  TTEQKMVTFRKPTY-TLGFSNTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVS 126

Query: 265 AVVM 268
            V++
Sbjct: 127 VVIL 130


>gi|163857870|ref|YP_001632168.1| D-alanyl-D-alanine carboxypeptidase [Bordetella petrii DSM 12804]
 gi|163261598|emb|CAP43900.1| probable D-alanyl-D-alanine carboxypeptidase [Bordetella petrii]
          Length = 385

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 12/143 (8%)

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           LAL++ S N  + A G    G    F   M++KA+ +GM +T +   +GL  +N +++ R
Sbjct: 220 LALMS-SENRAAHALGRNYPGGLPAFVEAMNHKARALGMTSTHFIEPTGLSSQN-VSSPR 277

Query: 193 DQAILGILLR--KNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKMH-NIDGIKTGYT 245
           D   L  LLR     P  ++Y +  ++      R ++  N N L+ K   +I   KTGY 
Sbjct: 278 D---LARLLRAASQRPLIHRYSTDDQYEVDVANRTQVFRNTNLLVRKPDWDIKVSKTGYI 334

Query: 246 RNSGFNIVTSLRYKDDPIVAVVM 268
             +G  +V   R     +  V++
Sbjct: 335 NEAGECLVMLARINGRDVAMVLL 357


>gi|226365711|ref|YP_002783494.1| D-alanyl-D-alanine carboxypeptidase [Rhodococcus opacus B4]
 gi|226244201|dbj|BAH54549.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus opacus
           B4]
          Length = 426

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 90/232 (38%), Gaps = 22/232 (9%)

Query: 33  KILFLSIIMISMASELHAKPKYSS-IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIF 90
           K+    + +   A  L A    S  +V D++   +   K    RY PAS  KM+   +  
Sbjct: 80  KLAECGVALPDGAPALPADIAASGWVVADIDSGDVLAAKDPHGRYRPASTIKMLLALVAL 139

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           + L   K    T    ++ AA +  S + + +   +T  Q +  L+  S ND +      
Sbjct: 140 DELDLDK----TVTATAEDAAVEG-SAVGIGKNGQYTNRQLMQGLVMASGNDAAHLLARQ 194

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN------ 204
           + G        M+  A  +G  +T     SGL      ++  D A++     KN      
Sbjct: 195 LGGDAATVEK-MNRLADTLGAHDTRTATPSGLDGPGMSSSPFDLALIFHNAMKNPTFAEL 253

Query: 205 -------FPQYYKYFSIRKFRYRNRI-ITNHNKLLNKMHNIDGIKTGYTRNS 248
                  FP + K  +I + + R    + N N+LL       G KTG+T ++
Sbjct: 254 ISTETVQFPGFPKDPAIPEDQDRPPFALANDNQLLYNYPGALGGKTGFTDDA 305


>gi|213025793|ref|ZP_03340240.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 129

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 5/77 (6%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  DE R PASLTKMMT Y+I + +++ K  
Sbjct: 26  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFK 82

Query: 100 LNTQIPVSKTA-ATQNP 115
               + V   A AT NP
Sbjct: 83  ETDLVTVGNDAWATGNP 99


>gi|330999158|ref|ZP_08322877.1| serine-type D-Ala-D-Ala carboxypeptidase [Parasutterella
           excrementihominis YIT 11859]
 gi|329575358|gb|EGG56902.1| serine-type D-Ala-D-Ala carboxypeptidase [Parasutterella
           excrementihominis YIT 11859]
          Length = 388

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 112/248 (45%), Gaps = 23/248 (9%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +  D++ NQ+   K  D+P   AS+TK+MT  +I E      ++L+ +  V++     + 
Sbjct: 149 LAYDMDTNQVLYEKNADQPLPIASITKLMTALVIVE----SGVNLDDKFTVTREDFVPSS 204

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           +   L+     +  Q +   +  S N  +          + +F   M+ KA  +GM++++
Sbjct: 205 AHSKLRMGMEISRRQALHLALMSSDNRAAHFLARTYPTGKAQFIKEMNIKAALLGMKDSV 264

Query: 176 YKNASGLHDKNQ---------ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
           + ++ GL++ N+         IT A + A    L+R+        F I K   R  I + 
Sbjct: 265 FYDSIGLNNDNRSSAVDLSYLITGASEYA----LIRELSTTPEASFRIGK---REVISST 317

Query: 227 HNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N+L+ ++  +I+  KTG T  +G+ +V         +  + +  P    R   A E + 
Sbjct: 318 TNRLIKDEDWDIELQKTGLTTAAGYCMVMQAHVDGKNVAFIFLDSPNKYARANDA-EKLR 376

Query: 286 SFLEKKTL 293
           S+L ++++
Sbjct: 377 SYLSRESV 384


>gi|289805534|ref|ZP_06536163.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 140

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 5/77 (6%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  DE R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFK 93

Query: 100 LNTQIPVSKTA-ATQNP 115
               + V   A AT NP
Sbjct: 94  ETDLVTVGNDAWATGNP 110


>gi|68069965|ref|XP_676894.1| ribose-phosphate pyrophosphokinase [Plasmodium berghei strain ANKA]
 gi|56496794|emb|CAH94590.1| ribose-phosphate pyrophosphokinase, putative [Plasmodium berghei]
          Length = 544

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 90/204 (44%), Gaps = 30/204 (14%)

Query: 7   QSSAKKTFLTYPYGSIYIQR-------NIQLMGKILFLSIIMISMASELHAKPKYSSIVI 59
           +SSAKK  +  PY +   Q        N+  +G    ++I++ +  ++       S I +
Sbjct: 241 RSSAKKVIVVLPYLNYSRQNKHNGYFNNMHSLGAPE-IAILLQTCGAD-------SIIAV 292

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119
           D+N  ++ GF  D+  +  +L  +    +  EYL+ KKLH    +P+    A +   + +
Sbjct: 293 DLNNPRIEGFSTDQKFFQPALMNINPQSLAVEYLKKKKLHNPVIVPIDIDDA-ERAKEFW 351

Query: 120 LKEKTYFTTEQGILALIT----------RSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           ++ K + + + G   L++           +AND S    + ++  +    I+  +K    
Sbjct: 352 VRMKKH-SNDVGFTTLVSSTYNGMHSREEAANDESNESSKMLTNKQN---IVSQDKTNNS 407

Query: 170 GMQNTIYKNASGLHDKNQITTARD 193
            +++   KN   LH+  +IT   D
Sbjct: 408 SLKDFESKNNINLHENEKITIVGD 431


>gi|326442247|ref|ZP_08216981.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
          Length = 305

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 105/268 (39%), Gaps = 27/268 (10%)

Query: 28  IQLMGKILFLSIIMISMA-SELHAKPKYSSI---VIDVNKNQMTGFKQDEPRYP-ASLTK 82
           + L G +L  +  + + A +     PK S     ++D+   +    K D  R   AS TK
Sbjct: 7   VVLAGGLLLTASPLTAPAHAATRPAPKISGAAGYLMDLKTGKSVFSKSDSTRRQMASTTK 66

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYFTTEQGILALITR 138
           + T   +   L +K L LN ++ V ++     A +  S   LK     T  Q + AL+  
Sbjct: 67  VATAITV---LTTKGLDLNRKLTVKQSYRDYVAREKGSTADLKTGDKLTVRQLLHALMLP 123

Query: 139 SANDVSTAF------GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ-ITTA 191
           S  D + A       G   +   K F  +M+ KA  + ++NT + +  G+    Q  TT 
Sbjct: 124 SGCDAAYALADAFGKGTTTAARTKSFIGMMNKKAADLKLKNTKFDSFDGISPGGQNYTTP 183

Query: 192 RD------QAILGILLRKNFP--QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTG 243
            D       A    L R       Y+   +    + R    TN N LL     + GIKTG
Sbjct: 184 SDLTKLAKHAFSNQLFRDVVKTRTYHATATAANGKKRYYTWTNTNTLLGSYQGMVGIKTG 243

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
               +G  +V +        + VV+  P
Sbjct: 244 SGSKAGKCLVFAATRGSKTYIGVVLNGP 271


>gi|303256971|ref|ZP_07342985.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderiales
           bacterium 1_1_47]
 gi|302860462|gb|EFL83539.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderiales
           bacterium 1_1_47]
          Length = 377

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 112/248 (45%), Gaps = 23/248 (9%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +  D++ NQ+   K  D+P   AS+TK+MT  +I E      ++L+ +  V++     + 
Sbjct: 138 LAYDMDTNQVLYEKNADQPLPIASITKLMTALVIVE----SGVNLDDKFTVTREDFVPSS 193

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           +   L+     +  Q +   +  S N  +          + +F   M+ KA  +GM++++
Sbjct: 194 AHSKLRMGMEISRRQALHLALMSSDNRAAHFLARTYPTGKAQFIKEMNIKAALLGMKDSV 253

Query: 176 YKNASGLHDKNQ---------ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
           + ++ GL++ N+         IT A + A    L+R+        F I K   R  I + 
Sbjct: 254 FYDSIGLNNDNRSSAVDLSYLITGASEYA----LIRELSTTPEASFRIGK---REVISST 306

Query: 227 HNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N+L+ ++  +I+  KTG T  +G+ +V         +  + +  P    R   A E + 
Sbjct: 307 TNRLIKDEDWDIELQKTGLTTAAGYCMVMQAHVDGKNVAFIFLDSPNKYARANDA-EKLR 365

Query: 286 SFLEKKTL 293
           S+L ++++
Sbjct: 366 SYLSRESV 373


>gi|7766853|pdb|1ES4|A Chain A, C98n Mutant Of Streptomyces K15 Dd-Transpeptidase
          Length = 262

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 94/232 (40%), Gaps = 22/232 (9%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYFT 127
           D  R   S TK+MT  ++   L    L+L+ ++ + K         N S+ +L      T
Sbjct: 28  DTRRSTGSTTKIMTAKVV---LAQSNLNLDAKVTIQKAYSDYVVANNASQAHLIVGDKVT 84

Query: 128 TEQGILALITRSANDVSTAFGE-FISGSE-----KKFAILMSNKAKKIGMQNTIYKNASG 181
             Q +  L+  S ND + A  + + SGS      K F   M+  A  +G+ NT + +  G
Sbjct: 85  VRQLLYGLMLPSGNDAAYALADKYGSGSTRAARVKSFIGKMNTAATNLGLHNTHFDSFDG 144

Query: 182 LHDKNQITTARDQAILGILLRKN--FPQYY--KYFSIRKFRYRNRIIT-----NHNKLLN 232
           + +    +T RD   +     KN  F      K ++ +       I T     N N LL+
Sbjct: 145 IGNGANYSTPRDLTKIASSAMKNSTFRTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLS 204

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                 G+KTG    + + +V +       ++  V+   +   R+  A +++
Sbjct: 205 SYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTVLASTSIPARESDATKIM 256


>gi|317491244|ref|ZP_07949680.1| D-alanyl-D-alanine carboxypeptidase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920791|gb|EFV42114.1| D-alanyl-D-alanine carboxypeptidase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 315

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 23/208 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  + +      + + P AS+TK+MT  +  +     K  ++  I V       
Sbjct: 47  SAMVVDLKTHNVIYSSNPDVQVPIASITKLMTAMVALD----AKPAMDEVISVD----IH 98

Query: 114 NPSKL-----YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
           N  +L      ++  +  +  Q +L  +  S N  + +      G    F   M+ KA+ 
Sbjct: 99  NTKELKGVFSRVRVGSEVSRRQMMLMALMSSENRAAASLAHHYPGGYNAFIKAMNAKARS 158

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS--IRKFRYRNRIIT- 225
           +GM +T Y   +GL  KN ++TARD   L +   KN+P   +  +   +   + N + T 
Sbjct: 159 LGMTHTRYVEPTGLSVKN-VSTARDLTKL-LAASKNYPLISQLSTTETQSVTFSNPVYTE 216

Query: 226 ---NHNKLL-NKMHNIDGIKTGYTRNSG 249
              N N L+ N    I   KTG+T  +G
Sbjct: 217 TFNNTNHLVRNDKWAIQLTKTGFTNQAG 244


>gi|160879346|ref|YP_001558314.1| peptidoglycan binding domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160428012|gb|ABX41575.1| Peptidoglycan-binding domain 1 protein [Clostridium phytofermentans
           ISDg]
          Length = 667

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 104 IPVSKTAATQNPSKLY-LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           + VSK AA+     ++  KE    +    +L      + D   A  + I+G++  F  +M
Sbjct: 147 VTVSKRAASLKGENIFGFKEGDKISLNDLLLCFYFTGSEDARLAIVDHIAGNDTTFIAMM 206

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           ++ A+ IG+ NT Y N +G ++K+Q T   D
Sbjct: 207 NSVARNIGLINTNYSNINGDYNKSQRTMLYD 237


>gi|326789965|ref|YP_004307786.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
           DSM 5427]
 gi|326540729|gb|ADZ82588.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
           DSM 5427]
          Length = 450

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 103/243 (42%), Gaps = 32/243 (13%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           IS    +  +PK ++I+   +KN    F      YPAS TK++T   + + L +  +   
Sbjct: 27  ISADGAILIEPKTNTII--YSKNMYQTF------YPASTTKILTALAVLQDLPTDMIITK 78

Query: 102 TQIPVSKTAATQNP---SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
           TQ     TAA + P   S++ LK    +T   G+ A++  S N V         G+   F
Sbjct: 79  TQ-----TAADEVPADSSQIGLKVGDQYTVLDGLYAVLMASDNYVCYDLALADKGNISTF 133

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYFSIRK 216
           A  M+  A       + + N  G HD +  TT  D   L  + +  F  P   K      
Sbjct: 134 AKRMNGLAIDSNALFSHFINPHGYHDPDHYTTPYD---LSQIAKAAFDDPILTKIAGTSS 190

Query: 217 FRYR----NRII--TNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           + ++    + +I  T+ + LL+K       ++   KTGY   +G  +V    Y +  ++ 
Sbjct: 191 YNFKVANSDVVIPLTHTSALLDKNSPYYNSHVVASKTGYHTPAGRTLVAKAVYDNIELIG 250

Query: 266 VVM 268
           VVM
Sbjct: 251 VVM 253


>gi|190149713|ref|YP_001968238.1| penicillin-binding protein 7 precursor [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303249783|ref|ZP_07335987.1| penicillin-binding protein 7 precursor [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303252663|ref|ZP_07338826.1| penicillin-binding protein 7 precursor [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307245252|ref|ZP_07527343.1| hypothetical protein appser1_4600 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307247423|ref|ZP_07529470.1| hypothetical protein appser2_4190 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307251972|ref|ZP_07533873.1| hypothetical protein appser6_4920 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307254199|ref|ZP_07536044.1| hypothetical protein appser9_4520 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307256466|ref|ZP_07538248.1| hypothetical protein appser10_4720 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307258664|ref|ZP_07540399.1| hypothetical protein appser11_4650 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307263022|ref|ZP_07544644.1| hypothetical protein appser13_4450 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189914844|gb|ACE61096.1| penicillin-binding protein 7 precursor [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302648631|gb|EFL78824.1| penicillin-binding protein 7 precursor [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302651350|gb|EFL81502.1| penicillin-binding protein 7 precursor [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306853896|gb|EFM86110.1| hypothetical protein appser1_4600 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306856120|gb|EFM88276.1| hypothetical protein appser2_4190 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306860664|gb|EFM92676.1| hypothetical protein appser6_4920 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306862899|gb|EFM94848.1| hypothetical protein appser9_4520 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865096|gb|EFM96997.1| hypothetical protein appser10_4720 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306867321|gb|EFM99174.1| hypothetical protein appser11_4650 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306871648|gb|EFN03370.1| hypothetical protein appser13_4450 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 273

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 26/189 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-------KTAATQNPSKLYLKEKTYFTTEQ 130
           AS+TK+MT  I  E  ++K    N    +S       K   T+ P      + T    ++
Sbjct: 44  ASVTKLMTANIFLENNKNK----NCSASISDQDFDHIKGTGTKLP------KHTPIACDE 93

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            + A++  S N  + A       S  +F   M+ KA+++GM++T + ++SGL   N I++
Sbjct: 94  LLKAMLVHSDNYAAHALSRSAGMSRAQFIQKMNQKAQQLGMRSTRFSDSSGLSSAN-ISS 152

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLL-NKMHNIDGIKTGY 244
           A D   L      N     +  S  K  Y     RN  + N + L+  ++ +    KTGY
Sbjct: 153 ALDLVKLAKYSLNNAK--IQELSNTKAAYVRVGKRNVFMQNTSALVREELFDAAINKTGY 210

Query: 245 TRNSGFNIV 253
            R SG+N+V
Sbjct: 211 IRESGYNLV 219


>gi|158929991|gb|ABW82972.1| endopeptidase [uncultured bacterium pEAF66]
          Length = 368

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 19/208 (9%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-Q 113
           ++V+D N  ++   K  +   P AS+TK+MT  ++ E  Q     +N  + V++     +
Sbjct: 113 ALVLDQNSAEVLFEKNSKIALPIASITKLMTGLVVVEANQ----DMNEILTVTEDDVDHE 168

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +   L+  +  +    +   +  S N  + A G    G    F   M+ KA+ +GM +
Sbjct: 169 KWTSSRLRVGSQLSRASLLHIALMSSENRAAAALGRNYPGGVAGFVEAMNAKARALGMYD 228

Query: 174 TIYKNASGLHDKNQITTARDQAILGI------LLRK--NFPQYYKYFSIRKFRYRNRIIT 225
           T + ++SGL  KN I++A D A L        LLR+    P+     S R   Y N   T
Sbjct: 229 TRFVDSSGLSSKN-ISSAHDLAKLAAFAYHQPLLRQFSTDPKSVVAASGRTLNYHN---T 284

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
           N+  + +   +I   KTG+   +G  +V
Sbjct: 285 NY-LVASPDWDIGLQKTGFINEAGRCLV 311


>gi|307260895|ref|ZP_07542581.1| hypothetical protein appser12_4660 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869462|gb|EFN01253.1| hypothetical protein appser12_4660 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 273

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 26/189 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-------KTAATQNPSKLYLKEKTYFTTEQ 130
           AS+TK+MT  I  E  ++K    N    +S       K   T+ P      + T    ++
Sbjct: 44  ASVTKLMTANIFLENNKNK----NCSASISDQDFDHIKGTGTKLP------KHTPIACDE 93

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            + A++  S N  + A       S  +F   M+ KA+++GM++T + ++SGL   N I++
Sbjct: 94  LLKAMLVHSDNYAAHALSRSAGMSRAQFIQKMNQKAQQLGMRSTRFSDSSGLSSAN-ISS 152

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLL-NKMHNIDGIKTGY 244
           A D   L      N     +  S  K  Y     RN  + N + L+  ++ +    KTGY
Sbjct: 153 ALDLVKLAKYSLNNAK--IQELSNTKAAYVRVGKRNVFMQNTSALVREELFDAAINKTGY 210

Query: 245 TRNSGFNIV 253
            R SG+N+V
Sbjct: 211 IRESGYNLV 219


>gi|304312179|ref|YP_003811777.1| Probable D-alanyl-D-alanine carboxypeptidase [gamma proteobacterium
           HdN1]
 gi|301797912|emb|CBL46134.1| Probable D-alanyl-D-alanine carboxypeptidase [gamma proteobacterium
           HdN1]
          Length = 394

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 106/231 (45%), Gaps = 15/231 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++V+D +  ++   K      P AS+TK+MT  ++ +  QS  +H    I  +    T 
Sbjct: 140 AALVMDADTGEILYGKNSNETVPIASITKLMTAIVVLDAGQS--MHEILTI-TNDDVDTL 196

Query: 114 NPSKLYLKEKTYFTTEQGI-LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
             S   L+  T     + + LAL++ S N  ++A      G  +     M+ KA ++GM 
Sbjct: 197 RHSSSRLRVGTRLPRGEMMHLALMS-SENRAASALIRNYPGGLQAGLRAMNAKAAELGMT 255

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRI-ITN 226
           ++ + + +GL+  N+ +   D A + +     +P+ + Y +     +    YRN++   N
Sbjct: 256 SSHFYDGTGLNGGNRASLF-DLAKM-VKAANTYPEIHDYSTSSSAMVSVAGYRNQLRYVN 313

Query: 227 HNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
            N L+N    +I   KTGY R +G  +V   R      V V+M    +Q R
Sbjct: 314 TNPLVNNSGWDIGVTKTGYIREAGKCLVMQARIGATNTVLVLMDSWGAQTR 364


>gi|307249643|ref|ZP_07531629.1| hypothetical protein appser4_4530 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858341|gb|EFM90411.1| hypothetical protein appser4_4530 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 273

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 26/189 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-------KTAATQNPSKLYLKEKTYFTTEQ 130
           AS+TK+MT  I  E  ++K    N    +S       K   T+ P      + T    ++
Sbjct: 44  ASVTKLMTANIFLENNKNK----NCSASISDQDFDHIKGTGTKLP------KHTPIACDE 93

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            + A++  S N  + A       S  +F   M+ KA+++GM++T + ++SGL   N I++
Sbjct: 94  LLKAMLVHSDNYAAHALSRSAGMSRAQFIQKMNQKAQQLGMRSTRFSDSSGLSSAN-ISS 152

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLL-NKMHNIDGIKTGY 244
           A D   L      N     +  S  K  Y     RN  + N + L+  ++ +    KTGY
Sbjct: 153 ALDLVKLAKYSLNNAK--IQELSNTKAAYVRVGKRNVFMQNTSALVREELFDAAINKTGY 210

Query: 245 TRNSGFNIV 253
            R SG+N+V
Sbjct: 211 IRESGYNLV 219


>gi|293389974|ref|ZP_06634308.1| DacC protein [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290950508|gb|EFE00627.1| DacC protein [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 293

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-------EKTYFTTEQ 130
           AS+TK+MT  +  E+ ++ +           TA+  +    Y+K       + T  +  +
Sbjct: 44  ASVTKLMTANVFLEHNKNPRC----------TASITDDDFDYIKGTHTKLPKYTPISCRE 93

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  ++  S N  + A       +  +F   M+ KA+++GM++T + ++SGL + N  + 
Sbjct: 94  LLKMMLVHSDNYAAHALSRSAGMTRLQFIGKMNEKARQLGMKSTRFSDSSGLSNHNVSSV 153

Query: 191 ARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRN 247
                +    ++K   + +   S    K   RN  + N NKL+ ++M +    KTGY R 
Sbjct: 154 MDLVKLTKYSMKKTEIKAFSNISSTYVKAGKRNVFVKNTNKLVRDEMFSAAINKTGYIRE 213

Query: 248 SGFNIV 253
           SG+N+V
Sbjct: 214 SGYNLV 219


>gi|282852868|ref|ZP_06262209.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus gasseri
           224-1]
 gi|282555976|gb|EFB61597.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus gasseri
           224-1]
          Length = 148

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 4/90 (4%)

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA--TQNP--SKLYLKEKTYFTTEQGILAL 135
           ++K++T+Y+  + + +KKL  N ++  +K     + NP  S + LK    +T +Q   A 
Sbjct: 1   MSKLITIYLTLDAINNKKLSWNQKVKPTKQIVKISNNPEYSGVPLKLNHAYTIKQLYEAT 60

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           + +SAN  +   G+ ISGS++ F   M N+
Sbjct: 61  LIQSANGPAMLLGQAISGSQQAFVKKMRNQ 90


>gi|89899952|ref|YP_522423.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Rhodoferax
           ferrireducens T118]
 gi|89344689|gb|ABD68892.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Rhodoferax ferrireducens T118]
          Length = 282

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 96/224 (42%), Gaps = 17/224 (7%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQ---IPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           ASLTK+MT  ++ +     +  ++ Q   + + K +A+  P    L  +         LA
Sbjct: 50  ASLTKLMTAMVVLDSKPDMEEKISIQLADVDMFKHSASHVPLGTTLPRREVLQ-----LA 104

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           L++ S N  + +      G    F   +  K K +GM NT+ K  +GL  +N  +TA D 
Sbjct: 105 LMS-SDNRAAASLARTYPGGNPAFVKAVHEKIKSLGMINTVIKEPTGLSPENA-STAADL 162

Query: 195 AILGILLRKNFPQYYKYFSIRK----FRYRNRIITNHNKLLNKM-HNIDGIKTGYTRNSG 249
           A +     + +P      + R      + R+    N N+L+ K   +I   KTG+T  +G
Sbjct: 163 AKMAFAASR-YPVIVNITTDRSDLINMQGRSVEFHNTNRLVGKRGWDILLSKTGFTNEAG 221

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
             ++  ++        V++    S      AL  I  FL K+T+
Sbjct: 222 HCLIMRIKLAGKNTTLVLLNAKASSSTFFDALN-IRRFLAKQTI 264


>gi|289803285|ref|ZP_06533914.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 133

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 7/112 (6%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           L+   +S A +  A    + +++D    Q +T   + + R PASLTK+MT Y++   + S
Sbjct: 22  LAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDS 81

Query: 96  KKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSAN 141
            ++  +  + V + A A  NP     S ++LKE    +       LI  S N
Sbjct: 82  HRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGN 133


>gi|83644147|ref|YP_432582.1| D-alanyl-D-alanine carboxypeptidase [Hahella chejuensis KCTC 2396]
 gi|83632190|gb|ABC28157.1| D-alanyl-D-alanine carboxypeptidase [Hahella chejuensis KCTC 2396]
          Length = 313

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 7/138 (5%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK-TAATQNP 115
           V+DV        K  E   P AS++K+MT  ++ +     +L L+  + +++    T   
Sbjct: 46  VVDVESGVTLFAKNPETVAPIASISKLMTAMVVLD----AELPLDEMLTITEEDIDTWKN 101

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           +   ++        + +L  +  S N  + A G    G    F   M++KA+ +GM+NT 
Sbjct: 102 TYSRMRIGAVLPRSELLLLALMSSENRAALALGRTYPGGMTAFVSAMNDKARALGMRNTR 161

Query: 176 YKNASGLHDKNQITTARD 193
           +   SGL  +N ++TA D
Sbjct: 162 FVEPSGLSMEN-VSTASD 178


>gi|213613286|ref|ZP_03371112.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 137

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 5/77 (6%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  DE R PASLTKMMT Y+I + +++ K  
Sbjct: 61  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFK 117

Query: 100 LNTQIPVSKTA-ATQNP 115
               + V   A AT NP
Sbjct: 118 ETDLVTVGNDAWATGNP 134


>gi|126207904|ref|YP_001053129.1| penicillin-binding protein 7 precursor [Actinobacillus
           pleuropneumoniae L20]
 gi|126096696|gb|ABN73524.1| penicillin-binding protein 7 precursor [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 259

 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 26/189 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-------KTAATQNPSKLYLKEKTYFTTEQ 130
           AS+TK+MT  I  E  ++K    N    +S       K   T+ P      + T    ++
Sbjct: 44  ASVTKLMTANIFLENNKNK----NCSASISDQDFDHIKGTGTKLP------KHTPIACDE 93

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            + A++  S N  + A       S  +F   M+ KA+++GM++T + ++SGL   N I++
Sbjct: 94  LLKAMLVHSDNYAAHALSRSAGMSRAQFIQKMNQKAQQLGMRSTRFSDSSGLSSAN-ISS 152

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLL-NKMHNIDGIKTGY 244
           A D   L      N     +  S  K  Y     RN  + N + L+  ++ +    KTGY
Sbjct: 153 ALDLVKLAKYSLNN--AKIQELSNTKAAYVRVGKRNVFMQNTSALVREELFDAAINKTGY 210

Query: 245 TRNSGFNIV 253
            R SG+N+V
Sbjct: 211 IRESGYNLV 219


>gi|254254175|ref|ZP_04947492.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia dolosa AUO158]
 gi|124898820|gb|EAY70663.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia dolosa AUO158]
          Length = 341

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 6/155 (3%)

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           +AL++ S N  + A      G    F   M+ +A+++GM+ T ++  +GL   N ++TA 
Sbjct: 180 IALMS-SENRAAAALSRDYPGGRAAFVGAMNREARRLGMRRTHFREPTGLSPHN-VSTAD 237

Query: 193 DQA-ILGILLRKNFPQYYKYFSIRKFRYRNR--IITNHNKLLNKMH-NIDGIKTGYTRNS 248
           D A ++G   +    +Y+   +    R  +   +  N + L+      I   KTG+   S
Sbjct: 238 DLARLVGAAAKDPLIRYFSTDTSTTVRAGDDELLYVNSDPLVRYGRLPIRLQKTGFINES 297

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           G  +V  +R        V++G PT       AL++
Sbjct: 298 GHGVVMRMRVNGRRETIVLLGAPTRAGVSSDALKI 332


>gi|46143271|ref|ZP_00135568.2| COG1686: D-alanyl-D-alanine carboxypeptidase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 251

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 26/189 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-------KTAATQNPSKLYLKEKTYFTTEQ 130
           AS+TK+MT  I  E  ++K    N    +S       K   T+ P      + T    ++
Sbjct: 22  ASVTKLMTANIFLENNKNK----NCSASISDQDFDHIKGTGTKLP------KHTPIACDE 71

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            + A++  S N  + A       S  +F   M+ KA+++GM++T + ++SGL   N I++
Sbjct: 72  LLKAMLVHSDNYAAHALSRSAGMSRAQFIQKMNQKAQQLGMRSTRFSDSSGLSSAN-ISS 130

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLL-NKMHNIDGIKTGY 244
           A D   L      N     +  S  K  Y     RN  + N + L+  ++ +    KTGY
Sbjct: 131 ALDLVKLAKYSLNNAK--IQELSNTKAAYVRVGKRNVFMQNTSALVREELFDAAINKTGY 188

Query: 245 TRNSGFNIV 253
            R SG+N+V
Sbjct: 189 IRESGYNLV 197


>gi|29830922|ref|NP_825556.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces avermitilis
           MA-4680]
 gi|29608035|dbj|BAC72091.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           avermitilis MA-4680]
          Length = 276

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 30/230 (13%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-------QNPSKLYLKEKTYFTTEQ 130
            S TK+MT  ++   L    L+L+ ++ V K  +         + + L + +K   T  Q
Sbjct: 48  GSTTKIMTAKVV---LSQSNLNLDAKVTVQKAYSDYIVDNNYASSAHLIVGDK--VTVRQ 102

Query: 131 GILALITRSANDVSTAFGE-FISGSE-----KKFAILMSNKAKKIGMQNTIYKNASGLHD 184
            +  L+  S  D + A  + F SGS      K F   M++ AK +GM NT + +  G+  
Sbjct: 103 LLYGLMLPSGCDAAYALADKFGSGSTRAARVKSFLSKMNSTAKSLGMTNTHFDSFDGIGH 162

Query: 185 KNQITTARDQAILGILLRKN--FPQYYKYFSIRK--------FRYRNRIITNHNKLLNKM 234
            +  +T RD   L     K+  F    K  S ++        +RY N    N N LL   
Sbjct: 163 GSNYSTPRDLTKLASSAMKSSTFRTVVKTKSTKQKATTKSGGYRYYN--WDNTNPLLGTY 220

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
               G+KTG    + F +V +       ++  V+   +   R   A +L+
Sbjct: 221 TGTIGVKTGSGPEAKFCLVFAATRNGKTVIGTVLASTSVANRTADAKKLL 270


>gi|213025038|ref|ZP_03339485.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 160

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 21/136 (15%)

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           +   +  G    F   M+ KAK +GM +T +   +GL   N ++TARD   L ++  K +
Sbjct: 2   SLAHYYPGGYNAFIKAMNAKAKALGMTHTRFVEPTGLSIHN-VSTARDLTKL-LIATKQY 59

Query: 206 PQYYKYFSIRK-------------FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           P   +  + R+             FR  N ++   N       NI   KTG+T  +G  +
Sbjct: 60  PLIGQLSTTREDMATFSHPAYTLPFRNTNHLVYRDNW------NIQLTKTGFTNAAGHCL 113

Query: 253 VTSLRYKDDPIVAVVM 268
           V      + P+  VVM
Sbjct: 114 VMRTVINNKPVALVVM 129


>gi|262197058|ref|YP_003268267.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Haliangium
           ochraceum DSM 14365]
 gi|262080405|gb|ACY16374.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Haliangium
           ochraceum DSM 14365]
          Length = 340

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 15/146 (10%)

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           A++  S N    A G  +  S ++    M++ A ++G+++T +   SGL  +  ++TA +
Sbjct: 137 AMLVSSDNRAPIALGRAVGLSPEQLVAAMNHMASELGLRHTRFTCPSGL--RGNVSTAYE 194

Query: 194 QAILGILLRKNF--PQYYKYFS-----IRKFRYRNRIITNHN---KLLNKMHNIDGIKTG 243
            AI    LR     P   +        +R    + R I   N    L      + G KTG
Sbjct: 195 MAIA---LRAALADPVLAEIMGTAEVNVRSLHSKPRAIDYRNTNLSLRRSSFEVLGGKTG 251

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMG 269
           +TR +G+ +V + R     ++    G
Sbjct: 252 FTRAAGYCLVVAARLAGRDVIMAFFG 277


>gi|325473430|gb|EGC76625.1| hypothetical protein HMPREF9353_02420 [Treponema denticola F0402]
          Length = 188

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           N LL K+   DG+KTG+   SGFNI  + +   +  +AV++G
Sbjct: 6   NTLLKKIEGCDGLKTGFIYESGFNISLTAQKNGERFIAVILG 47


>gi|237800749|ref|ZP_04589210.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023607|gb|EGI03664.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 185

 Score = 39.3 bits (90), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 11/136 (8%)

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           N  + +      G    F + M+ KA+ +GM++T Y   +GL   N ++TARD   L + 
Sbjct: 2   NRAAASLAHSYPGGYPAFILAMNAKARALGMKHTAYVEPTGLSVFN-VSTARDLTKLVMA 60

Query: 201 LRKNFPQYY-------KYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNI 252
            RK +P          K  + RK  Y     +N + L+ K + +I   KTG+T  +G  +
Sbjct: 61  ARK-YPMISELSTTEQKTVTFRKPTY-TLGFSNTDHLVRKDNWDIKLTKTGFTNQAGHCL 118

Query: 253 VTSLRYKDDPIVAVVM 268
           V      + P+  V++
Sbjct: 119 VLLTSMANRPVSVVIL 134


>gi|153811401|ref|ZP_01964069.1| hypothetical protein RUMOBE_01793 [Ruminococcus obeum ATCC 29174]
 gi|149832528|gb|EDM87612.1| hypothetical protein RUMOBE_01793 [Ruminococcus obeum ATCC 29174]
          Length = 319

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 96/226 (42%), Gaps = 36/226 (15%)

Query: 55  SSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           S I++D+ N N     +++E + PASL K+     + EY  +    L++ +P +  A   
Sbjct: 63  SLILVDLSNDNIFISKRENEQQLPASLAKLF----VIEYAATLA-DLDSIVPANYEAIQL 117

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS--------GSEKKFAILM 162
                S   +  K YF       A++  S ND +    ++           S+++  + M
Sbjct: 118 TKPGSSVANIDAKKYF-LHNLFAAMLVPSGNDAAYVVADYCGSILSPQAKNSQERINVFM 176

Query: 163 ---SNKAKKIGMQNTIYKNASGLHDKNQITTARD-----------QAILGILLRKNFPQY 208
              +N  +  G +NTI  + SG +D N +TT  D           Q    I+ + N+   
Sbjct: 177 EHLNNYLQNQGYENTILYDPSG-YDVNALTTVSDLKSVSTHLLEKQWFRDIVSKSNYTAT 235

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
               S + +R  N  +   ++  N+  N+ GIKTG   N  +N+V 
Sbjct: 236 LPDGSTQTWRNTNTFLDQTSEYYNE--NVKGIKTGSLSND-YNLVV 278


>gi|113867401|ref|YP_725890.1| D-alanyl-D-alanine carboxypeptidase [Ralstonia eutropha H16]
 gi|113526177|emb|CAJ92522.1| D-Alanyl-D-alanine carboxypeptidase [Ralstonia eutropha H16]
          Length = 380

 Score = 39.3 bits (90), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 6/123 (4%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQ 113
           ++V+D N N++   K      P AS+TK+MT  ++ +     +L ++  + +S+    T+
Sbjct: 110 ALVMDQNSNEVLFQKNASAVLPIASITKLMTALVVMDA----RLPMDEVLTISEEDRDTE 165

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   L+  T  T ++ +L  +  S N  ++A G    G    F   M+ KA+++GM +
Sbjct: 166 KHSGSRLRFGTQLTRQELLLLALMSSENRAASALGRNYPGGLPAFVQAMNRKARELGMND 225

Query: 174 TIY 176
           + +
Sbjct: 226 SHF 228


>gi|194289422|ref|YP_002005329.1| d-alanyl-d-alanine carboxypeptidase [Cupriavidus taiwanensis LMG
           19424]
 gi|193223257|emb|CAQ69262.1| putative D-Alanyl-D-alanine carboxypeptidase [Cupriavidus
           taiwanensis LMG 19424]
          Length = 378

 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 6/123 (4%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQ 113
           ++V+D N N++   K      P AS+TK+MT  ++ +     +L ++  + +++    T+
Sbjct: 110 ALVMDQNSNEVLFQKNASAVLPIASITKLMTALVVMD----SRLPMDEVLTITEEDRDTE 165

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   L+  T  T ++ +L  +  S N  ++A G    G    F   M+ KA+++GM +
Sbjct: 166 KHSSSRLRFGTQLTRQELLLLALMSSENRAASALGRHYPGGLPAFVQAMNRKARELGMND 225

Query: 174 TIY 176
           + +
Sbjct: 226 SHF 228


>gi|76799308|ref|ZP_00781473.1| DD-carboxypeptidase [Streptococcus agalactiae 18RS21]
 gi|76585335|gb|EAO61928.1| DD-carboxypeptidase [Streptococcus agalactiae 18RS21]
          Length = 199

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 9/99 (9%)

Query: 188 ITTARDQAILGILLRKNFPQ---YYKYFSIRKF---RYRNRIIT-NHNKLLNK--MHNID 238
           +TTARD +IL     K +P    Y KY  ++      Y     T N++    K  +  +D
Sbjct: 5   VTTARDLSILTYHFLKKYPDILNYTKYPEVKAMVGTPYEETFTTYNYSTPGAKFGLEGVD 64

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           G+KTG + ++ FN + + + ++  ++ VV+G+    ++D
Sbjct: 65  GLKTGSSPSAAFNALVTAKRQNTRLITVVLGVGDWSDQD 103


>gi|148825354|ref|YP_001290107.1| hypothetical protein CGSHiEE_01190 [Haemophilus influenzae PittEE]
 gi|148715514|gb|ABQ97724.1| hypothetical protein CGSHiEE_01190 [Haemophilus influenzae PittEE]
          Length = 292

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 100/210 (47%), Gaps = 21/210 (10%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S +V D   N+ +  +  D  +  AS+TK+MT  +   +L++ K + N +I ++K    +
Sbjct: 20  SYVVYDFTHNRVLESYAPDSIQPIASVTKLMTANV---FLENNK-NPNCRIAITKEDTDR 75

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              +   L +    +  + + A++  S N  + A       S ++F   M+ KA ++GM 
Sbjct: 76  IKGTGTKLPKNIPISCNELLKAMLVHSDNYAAHALSRAAGISRRQFINKMNEKAHQLGMY 135

Query: 173 NTIYKNASGLHDKNQITTARDQAILG--------ILLRKNFPQYYKYFSIRKFRYRNRII 224
           +T + ++SGL   N I++  D   L         I    N    Y    I+  +Y+   I
Sbjct: 136 STRFHDSSGLSSYN-ISSPMDLVKLAKYSLNKADIKRLSNLSATY----IQAGKYK-LYI 189

Query: 225 TNHNKLL-NKMHNIDGIKTGYTRNSGFNIV 253
            N NKL+ +++ +    KTGY + SG+N+V
Sbjct: 190 KNTNKLVRDEIFDAAVNKTGYIQESGYNLV 219


>gi|254248244|ref|ZP_04941564.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia cenocepacia
           PC184]
 gi|124874745|gb|EAY64735.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia cenocepacia
           PC184]
          Length = 326

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 6/144 (4%)

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           +AL++ S N  + A      G    F   M+ +A+++GM++T ++  +GL   N ++TA 
Sbjct: 165 IALMS-SENRAAAALSRDYPGGRAAFVKAMNREARRLGMRHTHFREPTGLSPHN-VSTAE 222

Query: 193 DQA-ILGILLRKNFPQYYKYFSIRKFRYRNR--IITNHNKLLN-KMHNIDGIKTGYTRNS 248
           D A ++G   +    +Y+        R  +   +  N + L+  +   I   KTG+   S
Sbjct: 223 DLARLVGAAAQDPLIRYFSTDLSTTVRPGDGELVYVNSDPLVRYRRLPIRLQKTGFINES 282

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPT 272
           G  +V  +R K      V++G  T
Sbjct: 283 GHGVVMRMRVKGRRETVVLLGAAT 306


>gi|94958259|gb|ABF47261.1| penicillin binding protein 4-like protein [Staphylococcus xylosus]
          Length = 326

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 77/174 (44%), Gaps = 24/174 (13%)

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           +KLY  E   +T ++ +   ++ S+N  +   G+ +SG+   F   M+ KAK +GM+NT 
Sbjct: 10  TKLYPGET--YTVKELLQITVSNSSNAAALILGKEVSGNLSDFTDKMNKKAKALGMENTH 67

Query: 176 YKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           + N +G                + +  +TA+D  IL   + ++ P+   +   ++     
Sbjct: 68  FVNPTGAENHQLRDFVPKKYKSENDNTSTAKDFGILSQRVVQDTPKILDF--TKQLAPTQ 125

Query: 222 RIIT----NHNKLLNKM--HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
             +T    NH+     M     DG+KTG +  + +N   + +     I   +MG
Sbjct: 126 HSVTYYTFNHSLEGADMSLEGTDGLKTGSSDVADYNHTITTKRDGFRINQAIMG 179


>gi|107026153|ref|YP_623664.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           cenocepacia AU 1054]
 gi|116692663|ref|YP_838196.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           cenocepacia HI2424]
 gi|170738088|ref|YP_001779348.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           cenocepacia MC0-3]
 gi|105895527|gb|ABF78691.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Burkholderia cenocepacia AU 1054]
 gi|116650663|gb|ABK11303.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Burkholderia cenocepacia HI2424]
 gi|169820276|gb|ACA94858.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           cenocepacia MC0-3]
          Length = 360

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 6/144 (4%)

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           +AL++ S N  + A      G    F   M+ +A+++GM++T ++  +GL   N ++TA 
Sbjct: 199 IALMS-SENRAAAALSRDYPGGRAAFVKAMNREARRLGMRHTHFREPTGLSPHN-VSTAE 256

Query: 193 DQA-ILGILLRKNFPQYYKYFSIRKFRYRNR--IITNHNKLLN-KMHNIDGIKTGYTRNS 248
           D A ++G   +    +Y+        R  +   +  N + L+  +   I   KTG+   S
Sbjct: 257 DLARLVGAAAQDPLIRYFSTDLSTTVRPGDGELVYVNSDPLVRYRRLPIRLQKTGFINES 316

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPT 272
           G  +V  +R K      V++G  T
Sbjct: 317 GHGVVMRMRVKGRRETVVLLGAAT 340


>gi|218132847|ref|ZP_03461651.1| hypothetical protein BACPEC_00708 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991720|gb|EEC57724.1| hypothetical protein BACPEC_00708 [Bacteroides pectinophilus ATCC
           43243]
          Length = 417

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 108/262 (41%), Gaps = 46/262 (17%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           S+L+A+  Y+++ ID +  ++   K      P AS TK+MT  +  E      +     +
Sbjct: 38  SQLYAR--YAAL-IDADSGRVLFEKNGYEAAPNASTTKIMTCLLALELGNPDDV-----V 89

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
            VS  AA+    +L +K+  ++     + +L+ +S ND + A  E I+ S        S+
Sbjct: 90  TVSSYAASMPDVQLNIKKGEHYRLNDLLYSLMLQSHNDSAVAIAEHIASSYLDGGSYHSD 149

Query: 165 KAKK----------------------IGMQNTIYKNASGL--HDKN--QITTARDQA-IL 197
            A +                      IG  +  +   +GL   D+N     +A D A IL
Sbjct: 150 AASRSSEESRRLVQIFAAAMNERAAAIGCSSAHFVTPNGLDAEDENGPHSISAVDLARIL 209

Query: 198 GILLRKNFPQYYKYFSIRKFRYRN------RIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            + ++    ++      R + + N      R + N N  L+ M  +   KTG+T N+G+ 
Sbjct: 210 AVCIQNE--EFIHITRTRNYSFNNLDNTATRSVHNTNAFLDMMDGVICGKTGFTGNAGYC 267

Query: 252 IVTSLRYKDDPIVAVVM--GMP 271
              +        V+VV+  G P
Sbjct: 268 YTCAYASDGRRFVSVVLACGWP 289


>gi|28572595|ref|NP_789375.1| carboxypeptidase [Tropheryma whipplei TW08/27]
 gi|28410727|emb|CAD67113.1| putative carboxypeptidase [Tropheryma whipplei TW08/27]
          Length = 313

 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 12/122 (9%)

Query: 126 FTTEQGILALITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
            T +Q ++ L+  SAN+ +T+  + + G S  KFA        K G+ NT    ASGL D
Sbjct: 140 LTLKQSLIPLMLPSANNYATSLVKHLYGKSYPKFA---REWLDKNGLYNTDIYEASGLDD 196

Query: 185 KNQITTARDQAILGILLRKNF--PQYYKYFSIRKFRYRN-RIITNHNKLLNKMHNIDGIK 241
           +N  TT  D  I  +L +K +  P       +++    N  ++ N NK L  ++ IDGIK
Sbjct: 197 RNVSTT--DNLI--VLAKKAYSNPVLRGIMRLKEASIPNIGLVRNTNKALG-INGIDGIK 251

Query: 242 TG 243
           TG
Sbjct: 252 TG 253


>gi|169630315|ref|YP_001703964.1| D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium abscessus
           ATCC 19977]
 gi|169242282|emb|CAM63310.1| Probable D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium
           abscessus]
          Length = 287

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 44/223 (19%), Positives = 92/223 (41%), Gaps = 19/223 (8%)

Query: 33  KILFLSIIMIS-----MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTL 86
            +LFLS + +      MA+     P  + +V D++  Q+   +     + PAS  K++  
Sbjct: 17  SVLFLSTLPVGVARADMAAPPPEGPAQAWLVADLDSGQILAARDPYATHAPASTIKVLLA 76

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            +  +     ++ ++  +      A    + + +K    +T  + + A +  S ND +  
Sbjct: 77  LVALD-----EVPMDATVVADAADAKAECNCVGIKAGQTYTARELLDAALLESGNDAANT 131

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK--NQITTARDQAILGILLRKN 204
               + G +      M+ KA  +G  +T   + SGL     +  T+  D   L ++ R  
Sbjct: 132 LAHLLGGRQATVDK-MNAKAAALGATSTHTDSPSGLDAPGMDMRTSPHD---LAVIFRAA 187

Query: 205 F--PQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
              P + +  +     +  R + N N+L+ +   + G KTG+T
Sbjct: 188 LANPVFAEITAQPSAPFPGRGLHNQNELMYRYPGVIGGKTGFT 230


>gi|28493294|ref|NP_787455.1| serine-type D-Ala-D-Ala carboxypeptidase [Tropheryma whipplei str.
           Twist]
 gi|28476335|gb|AAO44424.1| serine-type D-Ala-D-Ala carboxypeptidase [Tropheryma whipplei str.
           Twist]
          Length = 313

 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 8/120 (6%)

Query: 126 FTTEQGILALITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
            T +Q ++ L+  SAN+ +T+  + + G S  KFA        K G+ NT    ASGL D
Sbjct: 140 LTLKQSLIPLMLPSANNYATSLVKHLYGKSYPKFA---REWLDKNGLYNTDIYEASGLDD 196

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-RIITNHNKLLNKMHNIDGIKTG 243
           +N ++TA +  +L      N P       +++    N  ++ N NK L  ++ IDGIKTG
Sbjct: 197 RN-VSTADNLIVLAKKAYSN-PVLRGIMRLKEASIPNIGLVRNTNKALG-INGIDGIKTG 253


>gi|134094725|ref|YP_001099800.1| D-alanyl-D-alanine-endopeptidase [Herminiimonas arsenicoxydans]
 gi|133738628|emb|CAL61673.1| putative Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
           [Herminiimonas arsenicoxydans]
          Length = 274

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 100/237 (42%), Gaps = 17/237 (7%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHL---NTQIPVSKTAA 111
           +IVID    ++   K      P ASLTK+MT  ++ +       H+   +  +   K ++
Sbjct: 27  AIVIDEATGKILFEKNSSDIVPIASLTKLMTAMLVLDARLDMHEHIMITDDDVDTLKFSS 86

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++ P    L   T        LAL++ S N  + A      G  + F +   NKA  + +
Sbjct: 87  SRVPVGSMLTRNTLLE-----LALMS-SDNRAAHALARTYPGGIEHFRLAARNKAHALSL 140

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS----IRKFRYRNRIITNH 227
           + T  +  +GL   N  +TA D A L  +    +P+  +  +    +       R   N 
Sbjct: 141 RRTNIEEPTGLSPYNT-STASDLARL-AMAAARYPEIERITTSAGDLIDLGSSARHYHNT 198

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           NKL+ +K   I   KTGYT+ +G  I+  +R      + V++    S  R   A+ L
Sbjct: 199 NKLVGDKNWTISLSKTGYTQEAGRCIIMRVRTAGRDAIMVLLNARASANRTADAVSL 255


>gi|33592636|ref|NP_880280.1| D-alanyl-D-alanine carboxypeptidase [Bordetella pertussis Tohama I]
 gi|33600419|ref|NP_887979.1| D-alanyl-D-alanine carboxypeptidase [Bordetella bronchiseptica
           RB50]
 gi|33568018|emb|CAE31931.1| probable D-alanyl-D-alanine carboxypeptidase [Bordetella
           bronchiseptica RB50]
 gi|33572282|emb|CAE41834.1| probable D-alanyl-D-alanine carboxypeptidase [Bordetella pertussis
           Tohama I]
 gi|332382053|gb|AEE66900.1| D-alanyl-D-alanine carboxypeptidase [Bordetella pertussis CS]
          Length = 259

 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 85/185 (45%), Gaps = 18/185 (9%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQNPSKLYLKEKTYFTTEQGI-LAL 135
           AS++K+MT  ++ +      L ++  I ++     T   +   L+  T  +    + LAL
Sbjct: 43  ASISKLMTALVVVD----ANLPMDEMIEITDDDVDTLKHTTSRLRVGTVLSRGDMLHLAL 98

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           ++ S N  + A G    G    F   M+ KA+ +GM NT +   +GL  +N +++ RD  
Sbjct: 99  MS-SENRAAHALGRNYPGGMPAFVAAMNAKARSLGMLNTRFVEPTGLSSEN-VSSPRD-- 154

Query: 196 ILGILLR--KNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKMH-NIDGIKTGYTRNS 248
            L  +LR     P  ++Y +  ++      R +   N N L+ K   +I   KTG+   +
Sbjct: 155 -LARMLRAASQRPLIHRYSTDTEYEVEINNRTQTFRNTNLLVRKPDWDIKVSKTGFINEA 213

Query: 249 GFNIV 253
           G  +V
Sbjct: 214 GECLV 218


>gi|7766854|pdb|1ES5|A Chain A, S216a Mutant Of Streptomyces K15 Dd-Transpeptidase
          Length = 262

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 93/232 (40%), Gaps = 22/232 (9%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYFT 127
           D  R   S TK+MT  ++   L    L+L+ ++ + K         N S+ +L      T
Sbjct: 28  DTRRSTGSTTKIMTAKVV---LAQSNLNLDAKVTIQKAYSDYVVANNASQAHLIVGDKVT 84

Query: 128 TEQGILALITRSANDVSTAFGE-FISGSE-----KKFAILMSNKAKKIGMQNTIYKNASG 181
             Q +  L+  S  D + A  + + SGS      K F   M+  A  +G+ NT + +  G
Sbjct: 85  VRQLLYGLMLPSGCDAAYALADKYGSGSTRAARVKSFIGKMNTAATNLGLHNTHFDSFDG 144

Query: 182 LHDKNQITTARDQAILGILLRKN--FPQYY--KYFSIRKFRYRNRIIT-----NHNKLLN 232
           + +    +T RD   +     KN  F      K ++ +       I T     N N LL+
Sbjct: 145 IGNGANYSTPRDLTKIASSAMKNSTFRTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLS 204

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                 G+KTG    + + +V +       ++  V+   +   R+  A +++
Sbjct: 205 SYSGAIGVKTGAGPEAKYCLVFAATRGGKTVIGTVLASTSIPARESDATKIM 256


>gi|33595888|ref|NP_883531.1| D-alanyl-D-alanine carboxypeptidase [Bordetella parapertussis
           12822]
 gi|33565967|emb|CAE36518.1| probable D-alanyl-D-alanine carboxypeptidase [Bordetella
           parapertussis]
          Length = 259

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 82/187 (43%), Gaps = 16/187 (8%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQNPSKLYLKEKTYFTTEQGIL 133
           R  AS++K+MT  ++ +      L ++  I ++     T   +   L+  T  +    + 
Sbjct: 40  RPIASISKLMTALVVVD----ANLPMDEMIEITDDDVDTLKHTTSRLRVGTVLSRGDMLH 95

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
             +  S N  + A G    G    F   M+ KA+ +GM NT +   +GL  +N +++ RD
Sbjct: 96  LALMSSENRAAHALGRNYPGGMPAFVAAMNAKARSLGMLNTHFVEPTGLSSEN-VSSPRD 154

Query: 194 QAILGILLR--KNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKMH-NIDGIKTGYTR 246
              L  +LR     P  ++Y +  ++      R +   N N L+ K   +I   KTG+  
Sbjct: 155 ---LARMLRAASQRPLIHRYSTDTEYEVEINNRTQTFRNTNLLVRKPDWDIKVSKTGFIN 211

Query: 247 NSGFNIV 253
            +G  +V
Sbjct: 212 EAGECLV 218


>gi|266623881|ref|ZP_06116816.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
 gi|288864301|gb|EFC96599.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
          Length = 145

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 9/104 (8%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
             I++D +    + G   +E  YPAS+TK++T  ++ +     +  L+  +  S+ A   
Sbjct: 45  GGILMDADTGTILYGKNINEAYYPASITKLLTAQVVLD-----RCRLDEVVEFSQNAVYN 99

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
             Q    L +      + +  +  LI  SAN+V+ A  E  +GS
Sbjct: 100 VEQGSKSLSMDTGDRMSVKDCLYGLILHSANEVANALAEHAAGS 143


>gi|157833819|pdb|1SKF|A Chain A, Crystal Structure Of The Streptomyces K15
           Dd-Transpeptidase
          Length = 262

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 93/232 (40%), Gaps = 22/232 (9%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYFT 127
           D  R   S TK+MT  ++   L    L+L+ ++ + K         N S+ +L      T
Sbjct: 28  DTRRSTGSTTKIMTAKVV---LAQSNLNLDAKVTIQKAYSDYVVANNASQAHLIVGDKVT 84

Query: 128 TEQGILALITRSANDVSTAFGE-FISGSE-----KKFAILMSNKAKKIGMQNTIYKNASG 181
             Q +  L+  S  D + A  + + SGS      K F   M+  A  +G+ NT + +  G
Sbjct: 85  VRQLLYGLMLPSGCDAAYALADKYGSGSTRAARVKSFIGKMNTAATNLGLHNTHFDSFDG 144

Query: 182 LHDKNQITTARDQAILGILLRKN--FPQYY--KYFSIRKFRYRNRIIT-----NHNKLLN 232
           + +    +T RD   +     KN  F      K ++ +       I T     N N LL+
Sbjct: 145 IGNGANYSTPRDLTKIASSAMKNSTFRTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLS 204

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                 G+KTG    + + +V +       ++  V+   +   R+  A +++
Sbjct: 205 SYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTVLASTSIPARESDATKIM 256


>gi|302552772|ref|ZP_07305114.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces viridochromogenes
           DSM 40736]
 gi|302470390|gb|EFL33483.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces viridochromogenes
           DSM 40736]
          Length = 277

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 18/135 (13%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-------QNPSKLYLKEKT 124
           D  R   S TK+MT  ++   L+   L+L++++ V K  +         + +KL + +K 
Sbjct: 42  DTRRSTGSTTKIMTALVV---LKQSNLNLDSKVTVQKAYSDYIVENNWASNAKLIVGDK- 97

Query: 125 YFTTEQGILALITRSANDVSTAFGE-FISGSE-----KKFAILMSNKAKKIGMQNTIYKN 178
             T  Q +  L+  S  D + A  + F SGS      K F   M++ AK +G+ NT + +
Sbjct: 98  -VTVRQLLYGLMLPSGCDAAYALADKFGSGSTRAARVKSFIGKMNSTAKSLGLSNTHFDS 156

Query: 179 ASGLHDKNQITTARD 193
             G+   +  +T RD
Sbjct: 157 FDGIGKGSNYSTPRD 171


>gi|145636368|ref|ZP_01792037.1| penicillin-binding protein 7 [Haemophilus influenzae PittHH]
 gi|319775769|ref|YP_004138257.1| penicillin-binding protein 7 [Haemophilus influenzae F3047]
 gi|329123610|ref|ZP_08252170.1| serine-type D-Ala-D-Ala carboxypeptidase [Haemophilus aegyptius
           ATCC 11116]
 gi|145270533|gb|EDK10467.1| penicillin-binding protein 7 [Haemophilus influenzae PittHH]
 gi|317450360|emb|CBY86576.1| penicillin-binding protein 7 homolog precursor [Haemophilus
           influenzae F3047]
 gi|327469809|gb|EGF15274.1| serine-type D-Ala-D-Ala carboxypeptidase [Haemophilus aegyptius
           ATCC 11116]
          Length = 292

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 100/210 (47%), Gaps = 21/210 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S +V D   N++      +   P AS+TK+MT  +   +L++ K + N +I ++K    +
Sbjct: 20  SYVVYDFTHNRVLESHASDSIQPIASVTKLMTANV---FLENNK-NPNCRIAITKEDTDR 75

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              +   L +    +  + + A++  S N  + A    +  S ++F   M+ KA ++GM 
Sbjct: 76  IKGTGTKLPKNIPISCNELLKAMLVHSDNYAAHALSRAVGISRRQFIKKMNEKAHQLGMY 135

Query: 173 NTIYKNASGLHDKNQITTARDQAILG--------ILLRKNFPQYYKYFSIRKFRYRNRII 224
           +T + ++SGL   N I++  D   L         I    N    Y    I+  +++   I
Sbjct: 136 STRFHDSSGLSSYN-ISSPMDLVKLAKYSLNKSDIKRLSNLSATY----IQAGKHK-LYI 189

Query: 225 TNHNKLL-NKMHNIDGIKTGYTRNSGFNIV 253
            N NKL+ +++ +    KTGY + SG+N+V
Sbjct: 190 KNTNKLVRDEIFDAAVNKTGYIQESGYNLV 219


>gi|76799932|ref|ZP_00781933.1| DD-carboxypeptidase [Streptococcus agalactiae 18RS21]
 gi|76584716|gb|EAO61473.1| DD-carboxypeptidase [Streptococcus agalactiae 18RS21]
          Length = 96

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 51 KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKK 97
          KPK +SIVID   + +     D  R PAS++KM TLY++FE L   K
Sbjct: 45 KPK-ASIVIDNKGHILWEDNADLERDPASMSKMXTLYLLFEDLXKGK 90


>gi|329934886|ref|ZP_08284927.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           griseoaurantiacus M045]
 gi|329305708|gb|EGG49564.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           griseoaurantiacus M045]
          Length = 461

 Score = 37.0 bits (84), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 15/184 (8%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS  KM+    +         H  T+  ++        S + +KE   +T EQ  L + 
Sbjct: 88  PASTLKMLFADTVLGKFDRTDRHKVTREEIADVPTGS--SLVGIKENITYTVEQLWLGVF 145

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            RS ND          G  K  A  M  +A  +   +T  ++  G   K Q+++A D  +
Sbjct: 146 LRSGNDAVHVLSHMNGGIAKTVA-EMQARAADLQALDTQVRSPDGFDHKGQVSSAYDLTL 204

Query: 197 LGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLLNKMHNID------GIKTGYT 245
                 KN   + +Y   R   +     +   I N ++LL     ++      G+K GYT
Sbjct: 205 FARHGLKND-DFRRYCGTRTADFPAGGKKTFQIQNTDRLLTGAWGLETYEGLIGVKNGYT 263

Query: 246 RNSG 249
            ++G
Sbjct: 264 SHAG 267


>gi|282860935|ref|ZP_06270001.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           sp. ACTE]
 gi|282564671|gb|EFB70207.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           sp. ACTE]
          Length = 412

 Score = 37.0 bits (84), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 94/236 (39%), Gaps = 20/236 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S IV D     +        R P AS  KM+    +   LQ    +L  +  ++     +
Sbjct: 68  SWIVADAESGDVLAAHNSHWRLPPASTLKMLFADTVLPALQPTTSYLVKEQDLAGVG--E 125

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S + +KE   +T     L +  +S ND          G +   A  M   A ++   +
Sbjct: 126 GSSLVGVKEDHSYTVHDLWLGVFLQSGNDAVHVLASMYGGVDATVAA-MQRHAYELQALD 184

Query: 174 TIYKNASGLHDKNQITTARDQAILG--ILLRKNFPQYYKYFSIR------KFRYRNRI-I 224
           T   +  G   +NQ+++A D  +     L + +F +Y    S +      K + R    I
Sbjct: 185 TRVVSPDGYDAQNQVSSAYDLTLFARSGLQKADFREYAATASAQFPGEQEKGKKRQSFGI 244

Query: 225 TNHNKLLNKMHNID------GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
            N N+LL     ++      G+K GYT ++G N  T +  ++  ++ V +  P S+
Sbjct: 245 QNTNRLLTGADGVEQYQGIAGVKNGYTTHAG-NTFTGVAERNGRVLLVTVMHPDSE 299


>gi|7766852|pdb|1ES3|A Chain A, C98a Mutant Of Streptomyces K15 Dd-Transpeptidase
          Length = 262

 Score = 37.0 bits (84), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 93/232 (40%), Gaps = 22/232 (9%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYFT 127
           D  R   S TK+MT  ++   L    L+L+ ++ + K         N S+ +L      T
Sbjct: 28  DTRRSTGSTTKIMTAKVV---LAQSNLNLDAKVTIQKAYSDYVVANNASQAHLIVGDKVT 84

Query: 128 TEQGILALITRSANDVSTAFGE-FISGSE-----KKFAILMSNKAKKIGMQNTIYKNASG 181
             Q +  L+  S  D + A  + + SGS      K F   M+  A  +G+ NT + +  G
Sbjct: 85  VRQLLYGLMLPSGADAAYALADKYGSGSTRAARVKSFIGKMNTAATNLGLHNTHFDSFDG 144

Query: 182 LHDKNQITTARDQAILGILLRKN--FPQYY--KYFSIRKFRYRNRIIT-----NHNKLLN 232
           + +    +T RD   +     KN  F      K ++ +       I T     N N LL+
Sbjct: 145 IGNGANYSTPRDLTKIASSAMKNSTFRTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLS 204

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                 G+KTG    + + +V +       ++  V+   +   R+  A +++
Sbjct: 205 SYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTVLASTSIPARESDATKIM 256


>gi|332365104|gb|EGJ42869.1| beta-lactamase [Streptococcus sanguinis SK355]
          Length = 427

 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 4/99 (4%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI- 104
           S  + K  YS  V  ++  +  G  QD+  Y AS+TK+  LY + E L  KK+ L+ +  
Sbjct: 197 SSKYNKADYSIYVKQLDTGKEAGINQDQEMYSASVTKLPYLYYVQEQLNQKKISLDQKFK 256

Query: 105 ---PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
               V+  A    P      EK+    E  +  LI R A
Sbjct: 257 YVGAVNDFAGAYEPEGSGSIEKSADDKEYSVHDLINRVA 295


>gi|21223223|ref|NP_629002.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces coelicolor A3(2)]
 gi|7649577|emb|CAB89066.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           coelicolor A3(2)]
          Length = 424

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 24/155 (15%)

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S + +KE+  +T     L +  RS ND          G EK  A  M+  AK++   +T 
Sbjct: 139 SMVGIKEEETYTVHDLWLGVFLRSGNDAVHVLSAMNDGVEKTVAD-MNAHAKELQAGDTT 197

Query: 176 YKNASGLHDKNQITTARDQAILG--ILLRKNFPQYYKYFSIR-KFRYRNR---------- 222
             +  G     Q+++A D  +     L +K+F +Y    ++R KF    +          
Sbjct: 198 VVSPDGYDMPGQVSSAYDLTLFARSGLQKKDFREYAS--TVRAKFPGETKKDKKGKTSRE 255

Query: 223 --IITNHNKLLNKMHNID------GIKTGYTRNSG 249
              I N N+LL    +++      G+K GYT N+G
Sbjct: 256 PFEIQNTNRLLAGDADVEVYPGIAGVKNGYTTNAG 290


>gi|291001743|ref|XP_002683438.1| WD40 domain-containing protein [Naegleria gruberi]
 gi|284097067|gb|EFC50694.1| WD40 domain-containing protein [Naegleria gruberi]
          Length = 1784

 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 97   KLHLNTQIPVSKTAATQN----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
            K+H +  IP +  +A  N        +L    YFTT Q +L + T   ND+      F+ 
Sbjct: 1682 KIHKSFNIPRANKSAVNNMLDTKQNEHLLNHEYFTTTQNLLYITTDLKNDLEHLLECFVE 1741

Query: 153  GSEKKFAILMSNKAKKIGMQNTIYK 177
            G    +A+L++     +G+ +TI K
Sbjct: 1742 GETIGYALLIATLLCDVGVLSTILK 1766


>gi|329116770|ref|ZP_08245487.1| hypothetical protein SPB_2043 [Streptococcus parauberis NCFD 2020]
 gi|326907175|gb|EGE54089.1| hypothetical protein SPB_2043 [Streptococcus parauberis NCFD 2020]
          Length = 428

 Score = 37.0 bits (84), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           M SE + K  YS  V  +N     G   D+  Y AS+ K+ TLY + E + + +L L+++
Sbjct: 196 MLSEKYNKDNYSVFVKQINTQASAGINADKQMYAASIAKLGTLYFVQERVNNGQLRLDSK 255


>gi|228979141|ref|ZP_04139487.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
 gi|228780589|gb|EEM28810.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
          Length = 129

 Score = 37.0 bits (84), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 9/90 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           S+I+I+ N  ++   K +E P   A+L+K+MT YI+ E L  +K+ L+  + +S      
Sbjct: 37  SAILINANSGEIVYKKNEETPVQSATLSKLMTEYIVLEQLNDRKIQLDDFVQISNEVFRV 96

Query: 112 TQNPSKLYLKEKTYFTT------EQGILAL 135
             +P ++   +KT F         QGI+ L
Sbjct: 97  ETSPIQVTSNDKTTFVIYFMHCYWQGIIVL 126


>gi|46446028|ref|YP_007393.1| putative serine-type D-Ala-D-Ala carboxypeptidase (penicillin
           binding protein) [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399669|emb|CAF23118.1| putative serine-type D-Ala-D-Ala carboxypeptidase (penicillin
           binding protein) [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 456

 Score = 36.6 bits (83), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 26/186 (13%)

Query: 34  ILFLSIIMISM-ASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIF 90
           I F++II  S+ ++ L  K    + ++   ++    F+Q+    ++PAS TK+ T     
Sbjct: 38  IFFVTIISFSLRSAPLDFKIAGEAAILLNAESGAILFEQEAYSCQFPASTTKVATAL--- 94

Query: 91  EYLQSKKLHLNTQIPVSKTAAT-------------------QNPSKLYLKEKTYFTTEQG 131
            Y  SKK  LN  +   + + T                    + S + LK+    +    
Sbjct: 95  -YALSKKQDLNQMMAAEQDSLTTLSQEAKKKTNYDPPYRLEPDGSHIGLKKGEMMSLHDL 153

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  S ND +      +  +   F   ++   KKIG + T + N  GLH     TTA
Sbjct: 154 LGGMLIPSGNDAANVIANALGPTIPVFMAELNIYLKKIGCEKTTFYNPHGLHHPQHQTTA 213

Query: 192 RDQAIL 197
            D A++
Sbjct: 214 YDLALI 219


>gi|256785674|ref|ZP_05524105.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
          Length = 424

 Score = 36.6 bits (83), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 24/155 (15%)

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S + +KE+  +T     L +  RS ND          G EK  A  M+  AK++   +T 
Sbjct: 139 SMVGIKEEETYTVHDLWLGVFLRSGNDAVHVLSAMNDGVEKTVAD-MNAHAKELQAGDTT 197

Query: 176 YKNASGLHDKNQITTARDQAILG--ILLRKNFPQYYKYFSIR-KFRYRNR---------- 222
             +  G     Q+++A D  +     L +K+F +Y    ++R KF    +          
Sbjct: 198 VVSPDGYDMPGQVSSAYDLTLFARSGLQKKDFREYAS--TVRAKFPGETKKDKKGKTSRE 255

Query: 223 --IITNHNKLLNKMHNID------GIKTGYTRNSG 249
              I N N+LL    +++      G+K GYT N+G
Sbjct: 256 PFEIQNTNRLLAGDTDVEVYPGIAGVKNGYTTNAG 290


>gi|260438393|ref|ZP_05792209.1| D-alanyl-D-alanine carboxypeptidase [Butyrivibrio crossotus DSM
           2876]
 gi|292808979|gb|EFF68184.1| D-alanyl-D-alanine carboxypeptidase [Butyrivibrio crossotus DSM
           2876]
          Length = 345

 Score = 36.6 bits (83), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 65/143 (45%), Gaps = 10/143 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDEP---RYPASLTKMMTLYIIFEYLQSKKLH-LNTQIPVSKTA 110
           +++++DVN  ++    Q  P    YPAS TK++T  I  +Y  +  +  +  ++ +++  
Sbjct: 86  AALLVDVNTGEV--LFQKNPHKKEYPASTTKILTSLIAIKYGDANSVRKVGDEVIINE-- 141

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
              N      ++      +  I   + +S ND +     F + +      LM+ +AK +G
Sbjct: 142 --NNVVMCDFRQGDLIPFDIAIHGALMKSGNDAAAVLALFAADNMSDAVALMNKEAKSLG 199

Query: 171 MQNTIYKNASGLHDKNQITTARD 193
              + + N  GL++ N  TT  D
Sbjct: 200 ATESNFVNPHGLYNDNHYTTVYD 222


>gi|294630405|ref|ZP_06708965.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14]
 gi|292833738|gb|EFF92087.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14]
          Length = 283

 Score = 36.6 bits (83), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 103/259 (39%), Gaps = 24/259 (9%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           A  + AK  Y  ++ + N + +     D      S TK+MT  ++   L  K L+L+ ++
Sbjct: 22  APSIVAKGGY--VMNNANGSSLYTKAADTKLSTGSTTKIMTAKVV---LSQKNLNLDAKV 76

Query: 105 PVSKT----AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF------GEFISGS 154
            + K         N S+ +L      T  Q +  L+  S  D + A       G  +S  
Sbjct: 77  TIQKAYSDYVVKNNASQAHLIVGDKVTVRQLLYGLMLPSGCDAAYALADKYGTGSTMSAR 136

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF-------PQ 207
            K F   M+  AK + ++NT + +  G+ +    +T RD   +     KN         +
Sbjct: 137 VKSFIGKMNTAAKDLKLKNTHFDSFDGIGNGKNYSTPRDLTKIASSAMKNANFRAIVKTK 196

Query: 208 YYKYFSIRKFRYRNRII--TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            Y   ++ K      +   TN N LL+      G+KTG    + + +V +       ++ 
Sbjct: 197 SYTAKTVTKTGSTRTMATWTNTNTLLSSYKGAIGVKTGSGPEAKYCLVFAATRGSKTVIG 256

Query: 266 VVMGMPTSQERDQKALELI 284
            V+   +  +R   A +L+
Sbjct: 257 TVLASSSINQRATDATKLL 275


>gi|290958013|ref|YP_003489195.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei 87.22]
 gi|260647539|emb|CBG70644.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei
           87.22]
          Length = 492

 Score = 36.6 bits (83), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 86/222 (38%), Gaps = 25/222 (11%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS  KM+    +         H    +P          S + +KE   +T     L + 
Sbjct: 173 PASTLKMLFADTLLPKFNKDDEH--KVLPADLAGIGAGSSMVGIKEDEKYTVHDLWLGVF 230

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            RS ND        ++G  K+    M+  A+++   +T   +  G   K Q+++A D  +
Sbjct: 231 LRSGNDAVHVL-SAMNGGVKQTVADMNEHAEELQALDTHAVSPDGYDAKGQVSSAYDLTL 289

Query: 197 LG--ILLRKNFPQYY------------------KYFSIRKFRYRNRIITNHNKLLNKMHN 236
                L +K+F +Y                   K  S  + +  NR++T  + L +    
Sbjct: 290 FARSGLQKKDFREYCSTVRAKFPGETKKGKNGKKSRSSFEIQNTNRLLTGDSGL-DSYQG 348

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           I G+K G T N+G    T +  +D  ++ V +  P   E +Q
Sbjct: 349 IAGVKNGNTTNAGATF-TGVAERDGRVLLVTVMHPEKNEHNQ 389


>gi|239929347|ref|ZP_04686300.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
           14672]
 gi|291437677|ref|ZP_06577067.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
           14672]
 gi|291340572|gb|EFE67528.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
           14672]
          Length = 429

 Score = 36.6 bits (83), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 106/273 (38%), Gaps = 35/273 (12%)

Query: 32  GKILFLSIIMISMASELHAKPK----YSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTL 86
           G  L L    + +A      PK     S IV D    ++        R  PAS  KM+  
Sbjct: 52  GARLGLPGTQVDLAGGAPVLPKDLSARSWIVADAESGEVLAAHNAHWRLAPASTLKMLFA 111

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-LKEKTYFTTEQGILALITRSANDVST 145
             +         H   ++ VS  A     S +  +KE+  +T     L +  RS ND   
Sbjct: 112 DTLLPKWPKSTEH---RVEVSDMAGVGPGSSMVGIKEEETYTVHDLWLGVFLRSGNDAVH 168

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG--ILLRK 203
                  G EK     M+  A+++   +T   +  G   + Q+++A D  ++    L +K
Sbjct: 169 VLSAMNGGVEKTVE-EMNEHAEELQALDTHVVSPDGYDAEGQVSSAYDLTLIARSGLQKK 227

Query: 204 NFPQYYKYFSIRKFRYRNR------------IITNHNKLLNKMHN------IDGIKTGYT 245
           +F +Y    S+ KF    +             I N N+LL   ++      I G+K G T
Sbjct: 228 DFREYCSTVSV-KFPGETKKNKKGKEVRGSFEIQNTNRLLVGAYDVPVYEGIAGVKNGNT 286

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
            N+G    T +  +D  ++ V +  P   E+D+
Sbjct: 287 TNAGATF-TGVAERDGKVLLVTVMNP---EKDK 315


>gi|222874969|gb|EEF12100.1| predicted protein [Populus trichocarpa]
          Length = 326

 Score = 36.6 bits (83), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           S ++ DV   Q    +  + R  PASLTK+MT Y+ FE L+ K+L L+  +
Sbjct: 253 SWMLYDVTSGQALASQNADMRIEPASLTKLMTAYLAFEALKEKRLTLDQTV 303


>gi|289769566|ref|ZP_06528944.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
 gi|289699765|gb|EFD67194.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
          Length = 475

 Score = 36.2 bits (82), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 20/153 (13%)

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S + +KE+  +T     L +  RS ND          G EK  A  M+  AK++   +T 
Sbjct: 190 SMVGIKEEETYTVHDLWLGVFLRSGNDAVHVLSAMNDGVEKTVAD-MNAHAKELQAGDTT 248

Query: 176 YKNASGLHDKNQITTARDQAIL---GI----------LLRKNFPQYYKYFSIRKFRYRNR 222
             +  G     Q+++A D  +    G+           +R  FP   K     K      
Sbjct: 249 VVSPDGYDMPGQVSSAYDLTLFARSGLQKKDFREYASTVRAKFPGETKKDKKGKTSREPF 308

Query: 223 IITNHNKLLNKMHNID------GIKTGYTRNSG 249
            I N N+LL    +++      G+K GYT N+G
Sbjct: 309 EIQNTNRLLAGDTDVEVYPGIAGVKNGYTTNAG 341


>gi|222831972|gb|EEE70449.1| predicted protein [Populus trichocarpa]
          Length = 155

 Score = 36.2 bits (82), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
           +KTGY  +SGFN+V +    +  + AVV+G  +  +R + A +L+T   E + L
Sbjct: 1   MKTGYICSSGFNLVATATRGERTLAAVVLGAQSQVQRAEIAADLLTRGFETQGL 54


>gi|7766851|pdb|1ES2|A Chain A, S96a Mutant Of Streptomyces K15 Dd-Transpeptidase
          Length = 262

 Score = 36.2 bits (82), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 93/232 (40%), Gaps = 22/232 (9%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYFT 127
           D  R   S TK+MT  ++   L    L+L+ ++ + K         N S+ +L      T
Sbjct: 28  DTRRSTGSTTKIMTAKVV---LAQSNLNLDAKVTIQKAYSDYVVANNASQAHLIVGDKVT 84

Query: 128 TEQGILALITRSANDVSTAFGE-FISGSE-----KKFAILMSNKAKKIGMQNTIYKNASG 181
             Q +  L+  +  D + A  + + SGS      K F   M+  A  +G+ NT + +  G
Sbjct: 85  VRQLLYGLMLPAGCDAAYALADKYGSGSTRAARVKSFIGKMNTAATNLGLHNTHFDSFDG 144

Query: 182 LHDKNQITTARDQAILGILLRKN--FPQYY--KYFSIRKFRYRNRIIT-----NHNKLLN 232
           + +    +T RD   +     KN  F      K ++ +       I T     N N LL+
Sbjct: 145 IGNGANYSTPRDLTKIASSAMKNSTFRTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLS 204

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                 G+KTG    + + +V +       ++  V+   +   R+  A +++
Sbjct: 205 SYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTVLASTSIPARESDATKIM 256


>gi|255024934|ref|ZP_05296920.1| beta-lactamase [Listeria monocytogenes FSL J1-208]
          Length = 135

 Score = 36.2 bits (82), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 6/80 (7%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL---KEKTYFTTEQGILA 134
           ASL+K+MT +++ E + + +L  +  + + +     +PS + L    +K  ++      A
Sbjct: 57  ASLSKLMTAFLVLEAVDNNELAWDETLDLVR---LDDPSAVSLYAITQKRTWSVRDLYSA 113

Query: 135 LITRSANDVSTAFGEFISGS 154
           ++T SAND +   G+ + G+
Sbjct: 114 MLTMSANDAAETLGDRLDGA 133


>gi|50913356|ref|YP_059328.1| Beta-lactamase [Streptococcus pyogenes MGAS10394]
 gi|50902430|gb|AAT86145.1| Beta-lactamase [Streptococcus pyogenes MGAS10394]
          Length = 428

 Score = 36.2 bits (82), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           P YS  V  +N     G   D+  Y AS++K+  LYI+ + LQ KKL  N  +  +K
Sbjct: 204 PNYSIFVKQLNTQTSAGINADKKMYAASISKLAPLYIVQKQLQKKKLAENKTLTYTK 260


>gi|19745209|ref|NP_606345.1| hypothetical protein spyM18_0011 [Streptococcus pyogenes MGAS8232]
 gi|71902677|ref|YP_279480.1| hypothetical protein M28_Spy0010 [Streptococcus pyogenes MGAS6180]
 gi|94987641|ref|YP_595742.1| beta-lactamase [Streptococcus pyogenes MGAS9429]
 gi|94991507|ref|YP_599606.1| Beta-lactamase [Streptococcus pyogenes MGAS2096]
 gi|139472898|ref|YP_001127613.1| hypothetical protein SpyM50010 [Streptococcus pyogenes str.
           Manfredo]
 gi|306826401|ref|ZP_07459715.1| beta-lactamase [Streptococcus pyogenes ATCC 10782]
 gi|19747298|gb|AAL96844.1| hypothetical protein spyM18_0011 [Streptococcus pyogenes MGAS8232]
 gi|71801772|gb|AAX71125.1| conserved hypothetical protein [Streptococcus pyogenes MGAS6180]
 gi|94541149|gb|ABF31198.1| beta-lactamase [Streptococcus pyogenes MGAS9429]
 gi|94545015|gb|ABF35062.1| Beta-lactamase [Streptococcus pyogenes MGAS2096]
 gi|134271144|emb|CAM29354.1| putative exported protein [Streptococcus pyogenes str. Manfredo]
 gi|304431396|gb|EFM34391.1| beta-lactamase [Streptococcus pyogenes ATCC 10782]
          Length = 428

 Score = 36.2 bits (82), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           P YS  V  +N     G   D+  Y AS++K+  LYI+ + LQ KKL  N  +  +K
Sbjct: 204 PNYSIFVKQLNTQTSAGINADKKMYAASISKLAPLYIVQKQLQKKKLAENKTLTYTK 260


>gi|289673758|ref|ZP_06494648.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. syringae
           FF5]
          Length = 151

 Score = 35.8 bits (81), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 12/132 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++VID+  +++      +   P AS+TK+MT  ++ +  Q     ++  IPV+    +Q
Sbjct: 27  SAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVVLDAKQP----MDEVIPVN---ISQ 79

Query: 114 NPSKLYLKEKTYFTTEQG----ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +  +    +E      +L  +  S N  + +      G    F + M+ KAK +
Sbjct: 80  TPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 139

Query: 170 GMQNTIYKNASG 181
           GM++T Y   +G
Sbjct: 140 GMKHTAYVEPTG 151


>gi|293607038|ref|ZP_06689381.1| penicillin-binding protein 7 [Achromobacter piechaudii ATCC 43553]
 gi|292814528|gb|EFF73666.1| penicillin-binding protein 7 [Achromobacter piechaudii ATCC 43553]
          Length = 399

 Score = 35.8 bits (81), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 12/128 (9%)

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           LAL++ S N  + A G    G    F   M+ KA+ +GM +T +   +GL   N +++  
Sbjct: 230 LALMS-SENRAANALGRHYPGGLPAFVAAMNAKAQSLGMTSTRFIEPTGLSS-NNVSSPH 287

Query: 193 DQAILGILLR--KNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKMH-NIDGIKTGYT 245
           D   L  LLR     P  ++Y +  ++      R +   N N L+ K   +I   KTGY 
Sbjct: 288 D---LARLLRAASQRPLIHRYSTDTEYDVEINNRTQTFRNTNLLVRKPDWDIKVSKTGYI 344

Query: 246 RNSGFNIV 253
             +G  +V
Sbjct: 345 NEAGECLV 352


>gi|15674259|ref|NP_268432.1| hypothetical protein SPy_0012 [Streptococcus pyogenes M1 GAS]
 gi|71909824|ref|YP_281374.1| beta-lactamase [Streptococcus pyogenes MGAS5005]
 gi|13621334|gb|AAK33154.1| hypothetical protein SPy_0012 [Streptococcus pyogenes M1 GAS]
 gi|71852606|gb|AAZ50629.1| beta-lactamase [Streptococcus pyogenes MGAS5005]
          Length = 428

 Score = 35.8 bits (81), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           P YS  V  +N     G   D+  Y AS++K+  LYI+ + LQ KKL  N  +  +K
Sbjct: 204 PNYSIFVKQLNTQTSAGINADKKMYAASISKLAPLYIVQKQLQKKKLAENKTLTYTK 260


>gi|94993406|ref|YP_601504.1| beta-lactamase [Streptococcus pyogenes MGAS10750]
 gi|94546914|gb|ABF36960.1| Beta-lactamase [Streptococcus pyogenes MGAS10750]
          Length = 428

 Score = 35.8 bits (81), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           P YS  V  +N     G   D+  Y AS++K+  LYI+ + LQ KKL  N  +  +K
Sbjct: 204 PNYSIFVKQLNTQTSAGINADKKMYAASISKLAPLYIVQKQLQKKKLAENKTLTYTK 260


>gi|94989519|ref|YP_597619.1| Beta-lactamase [Streptococcus pyogenes MGAS10270]
 gi|94543027|gb|ABF33075.1| Beta-lactamase [Streptococcus pyogenes MGAS10270]
          Length = 428

 Score = 35.8 bits (81), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           P YS  V  +N     G   D+  Y AS++K+  LYI+ + LQ KKL  N  +  +K
Sbjct: 204 PNYSIFVKQLNTQTSAGINADKKMYAASISKLAPLYIVQKQLQKKKLAENKTLTYTK 260


>gi|209558596|ref|YP_002285068.1| hypothetical protein Spy49_0010 [Streptococcus pyogenes NZ131]
 gi|209539797|gb|ACI60373.1| hypothetical protein Spy49_0010 [Streptococcus pyogenes NZ131]
          Length = 428

 Score = 35.8 bits (81), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           P YS  V  +N     G   D+  Y AS++K+  LYI+ + LQ KKL  N  +  +K
Sbjct: 204 PNYSIFVKQLNTQTSAGINADKKMYAASISKLAPLYIVQKQLQKKKLAENKTLTYTK 260


>gi|311108185|ref|YP_003981038.1| D-alanyl-D-alanine endopeptidase 2 [Achromobacter xylosoxidans A8]
 gi|310762874|gb|ADP18323.1| D-alanyl-D-alanine endopeptidase 2 [Achromobacter xylosoxidans A8]
          Length = 399

 Score = 35.8 bits (81), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 12/128 (9%)

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           LAL++ S N  + A G    G    F   M+ KA+ +GM +T +   +GL   N +++  
Sbjct: 230 LALMS-SENRAANALGRHYPGGLPAFVAAMNAKAQALGMTSTRFIEPTGLSSDN-VSSPH 287

Query: 193 DQAILGILLR--KNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKMH-NIDGIKTGYT 245
           D   L  LLR     P  ++Y +  ++      R +   N N L+ K   +I   KTGY 
Sbjct: 288 D---LARLLRAASQRPLIHRYSTDTEYDVEVNNRTQTFRNTNLLVRKPDWDIKVSKTGYI 344

Query: 246 RNSGFNIV 253
             +G  +V
Sbjct: 345 NEAGECLV 352


>gi|16272312|ref|NP_438525.1| penicillin-binding protein 7 [Haemophilus influenzae Rd KW20]
 gi|260580573|ref|ZP_05848401.1| penicillin-binding protein 7 [Haemophilus influenzae RdAW]
 gi|1172032|sp|P44664|PBP7_HAEIN RecName: Full=D-alanyl-D-alanine endopeptidase;
           Short=DD-endopeptidase; AltName: Full=Penicillin-binding
           protein 7 homolog; Short=PBP-7; Flags: Precursor
 gi|1573331|gb|AAC22022.1| penicillin-binding protein 7, putative [Haemophilus influenzae Rd
           KW20]
 gi|260092915|gb|EEW76850.1| penicillin-binding protein 7 [Haemophilus influenzae RdAW]
          Length = 292

 Score = 35.8 bits (81), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 96/210 (45%), Gaps = 21/210 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S +V D   N++      +   P AS+TK+MT  +   +L++ K + N +I ++K    +
Sbjct: 20  SYVVYDFTHNRVLESHASDSIQPIASVTKLMTANV---FLENNK-NPNCRIAITKEDTDR 75

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              +   L +    +  + + A++  S N  + A       S ++F   M+ KA ++GM 
Sbjct: 76  IKGTGTKLPKNIPISCNELLKAMLVHSDNYAAHALSRAAGISRRQFIKKMNEKAHQLGMY 135

Query: 173 NTIYKNASGLHDKNQITTARDQAILG--------ILLRKNFPQYYKYFSIRKFRYRNRII 224
           +T + ++SGL   N I++  D   L         I    N    Y     +K       I
Sbjct: 136 STRFHDSSGLSSYN-ISSPMDLVKLAKYSLNKSDIKRLSNLSATYIQAGKQKL-----YI 189

Query: 225 TNHNKLL-NKMHNIDGIKTGYTRNSGFNIV 253
            N NKL+ +++ +    KTGY + SG+N+V
Sbjct: 190 KNTNKLVRDEIFDAAVNKTGYIQESGYNLV 219


>gi|327490348|gb|EGF22135.1| beta-lactamase [Streptococcus sanguinis SK1058]
          Length = 427

 Score = 35.8 bits (81), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 4/99 (4%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI- 104
           S  + K  YS  V  ++  +  G  QD+  Y AS+TK+  LY + E L  KKL L+ +  
Sbjct: 197 SSKYNKADYSIYVKQLDTGKEAGINQDQEMYSASVTKLPYLYYVQEQLDQKKLSLDQKFK 256

Query: 105 ---PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
               V+  A    P       K+    E  +  LI R A
Sbjct: 257 YIGAVNDFAGAYEPEGSGSIAKSADDKEYSVQDLINRVA 295


Searching..................................................done


Results from round 2




>gi|254780698|ref|YP_003065111.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
           [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040375|gb|ACT57171.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 336

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 336/336 (100%), Positives = 336/336 (100%)

Query: 1   MLQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID 60
           MLQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID
Sbjct: 1   MLQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID 60

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
           VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL
Sbjct: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS
Sbjct: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI 240
           GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI
Sbjct: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI 240

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR
Sbjct: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300

Query: 301 KDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
           KDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ
Sbjct: 301 KDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336


>gi|315121863|ref|YP_004062352.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
           [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495265|gb|ADR51864.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
           [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 357

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 228/330 (69%), Positives = 266/330 (80%), Gaps = 3/330 (0%)

Query: 1   MLQQKIQSSAKKTFLTYP--YGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIV 58
           MLQQ  +   KK FL Y   Y S  IQ +++ + KIL L II+ SMA + HAK +YSSIV
Sbjct: 1   MLQQNTKYLEKKQFLEYVSVYRSFIIQESLRSLWKILLLCIILTSMALKSHAKLEYSSIV 60

Query: 59  IDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID+ N  +  GFKQD+ RYPASLTKMMTLYIIFE+LQSKK+HLNT+IPVSKTA  Q PSK
Sbjct: 61  IDLLNDKRTNGFKQDKLRYPASLTKMMTLYIIFEHLQSKKMHLNTKIPVSKTATIQPPSK 120

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           LYLKE T+FT EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK +GM +T YK
Sbjct: 121 LYLKENTFFTVEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKSLGMNHTTYK 180

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNI 237
           NASGLHDKNQ TTARDQAILGI +RKNFPQYYKYFSIRKF+YRN+II NHNKL+NK+H I
Sbjct: 181 NASGLHDKNQKTTARDQAILGITIRKNFPQYYKYFSIRKFQYRNKIILNHNKLINKIHGI 240

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQ 297
           DGIKTGYTR+SGFNIV SL+ +++ I+AVVMGMPT Q+RDQKALELI SFL  K  KH+ 
Sbjct: 241 DGIKTGYTRDSGFNIVASLQNENNSIIAVVMGMPTCQKRDQKALELINSFLNTKKTKHKP 300

Query: 298 THRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
             +  NL+ +   K+L+ +K+K +  Q  K
Sbjct: 301 IWKSGNLTFSPTMKALITEKIKDSNQQLPK 330


>gi|92113673|ref|YP_573601.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chromohalobacter
           salexigens DSM 3043]
 gi|91796763|gb|ABE58902.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Chromohalobacter salexigens DSM 3043]
          Length = 359

 Score =  326 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 75/259 (28%), Positives = 143/259 (55%), Gaps = 7/259 (2%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           M+  A EL A    + +++D +  ++      D+   PASLTKMMT YI+   + +  + 
Sbjct: 1   MVPSAPELAA---SAWVLMDADSGKILVEHNADKELPPASLTKMMTAYIVEREIDAGNIS 57

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            + +  +S+ A     S+++L   +  + +  +  ++ +S ND S A  E I+GSE  FA
Sbjct: 58  GDDEATISENAWRTGGSRMFLNPGSKVSIDNLLRGVVIQSGNDASVALAEHIAGSEDAFA 117

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            LM+ +A ++ +++T + N +GL  +   ++A D A++   + K++P +Y+ +S + F +
Sbjct: 118 DLMNQQAARMKLEHTHFMNPTGLPHEEHYSSAHDLAVIAQHIIKDYPDHYEVYSEKYFTW 177

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            +    N N+LL +  N+DG+KTG+T  +G+ +V S +     +VAVVMG  + + R Q+
Sbjct: 178 NDIRQPNRNRLLWRDPNVDGLKTGHTEAAGYCLVASAKKDGTRLVAVVMGTDSDEARAQE 237

Query: 280 ALELIT---SFLEKKTLKH 295
             +L++    F E + L  
Sbjct: 238 TQKLLSYGFRFFETQRLYE 256


>gi|300113196|ref|YP_003759771.1| beta-lactamase [Nitrosococcus watsonii C-113]
 gi|299539133|gb|ADJ27450.1| Beta-lactamase [Nitrosococcus watsonii C-113]
          Length = 389

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 90/291 (30%), Positives = 155/291 (53%), Gaps = 15/291 (5%)

Query: 2   LQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSS---IV 58
           +Q KI +    +FL   Y S+           +LFL       +  + A P  S+   ++
Sbjct: 1   MQPKINAMKSCSFLLPWYCSL-----------LLFLGGEAWGQSLPIPAPPSLSAKAYLL 49

Query: 59  IDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
            D    ++    Q DE   PAS+TK+MT Y++F+ L+  ++HL  ++ +S+ A     S+
Sbjct: 50  QDFATGRVLAEHQADERIEPASITKLMTAYVVFKELKQGRIHLADEVLISEKAWRTGGSR 109

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
            +++  T    E  I  +I +S ND S A  E++ G+E+ FA LM+ +A+ +GM  + + 
Sbjct: 110 TFIEVNTRVPVETLIKGMIIQSGNDASVALAEYVGGTEEIFAALMNQQAQLLGMTGSHFV 169

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNI 237
           N++GL  +N   TARD A LG  +  +FP+YY ++S + F Y      N N LL +  ++
Sbjct: 170 NSTGLPHENHYMTARDIATLGRAIILDFPKYYDWYSEQAFTYNGITQYNRNLLLRRDSSV 229

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           DG KTG+T ++G+ + +S       ++AVVMG  + + R Q++L L+    
Sbjct: 230 DGFKTGHTNSAGYCLASSAMRDGMRLIAVVMGTGSPKIRMQESLALLNYGF 280


>gi|160872568|ref|ZP_02062700.1| penicillin-binding protein 6 (D-alanyl-D-alaninecarboxypeptidase
           fraction C) (DD-peptidase) (DD-carboxypeptidase) (PBP-6)
           [Rickettsiella grylli]
 gi|159121367|gb|EDP46705.1| penicillin-binding protein 6 (D-alanyl-D-alaninecarboxypeptidase
           fraction C) (DD-peptidase) (DD-carboxypeptidase) (PBP-6)
           [Rickettsiella grylli]
          Length = 397

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 96/313 (30%), Positives = 166/313 (53%), Gaps = 11/313 (3%)

Query: 1   MLQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID 60
           ML++++        +T   GS+     +  +            +A  ++AK   + +++D
Sbjct: 1   MLKRQLLFLTLVILMTGLLGSVVKADPVIPITAPTMAQPTFTPIAPNVNAK---AYLLMD 57

Query: 61  VNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119
               ++   K  DE   PASLTKMMT Y++   LQ  ++HL   +P+S+ A     SK++
Sbjct: 58  AYSGKILASKNIDEHLAPASLTKMMTSYVVSMALQQGRIHLTDLVPISEAAWKTGGSKMF 117

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           +K     + +  +  +I  S ND   A  E+I+GS++ F  LM+ +A ++GM+NT + + 
Sbjct: 118 VKVGDKVSVQDLMQGMIVDSGNDACVAMAEYIAGSQESFVNLMNQQAARLGMKNTHFVDV 177

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDG 239
            GL D N  TTARD +IL   L  +FP+ YK++S + F Y      N N+LL +  ++DG
Sbjct: 178 DGLPDPNHYTTARDMSILARALILDFPEDYKWYSQKWFSYNGIKQPNRNRLLWRNPDVDG 237

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQ 296
           IKTG+T  +GF +  S +     ++ +VMG P+ + R Q + +L+T    F E + L + 
Sbjct: 238 IKTGHTNEAGFCLAASGQKNGLRLITIVMGAPSDEVRAQDSQKLLTYGFRFFESRKLYN- 296

Query: 297 QTHRKDNLSSTSL 309
                +NL++T +
Sbjct: 297 ---AGENLATTKV 306


>gi|307544791|ref|YP_003897270.1| serine-type D-Ala-D-Ala carboxypeptidase [Halomonas elongata DSM
           2581]
 gi|307216815|emb|CBV42085.1| serine-type D-Ala-D-Ala carboxypeptidase [Halomonas elongata DSM
           2581]
          Length = 419

 Score =  322 bits (825), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 77/256 (30%), Positives = 140/256 (54%), Gaps = 5/256 (1%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI     L A    S I++D    ++      DE   PASLTK+MT Y++   L    + 
Sbjct: 57  MIPAPPRLAA---TSWILMDAGSGRVIAQHNPDERLPPASLTKLMTAYLVERELNKGNIS 113

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            +  +PVS+ A     SK++++        + +  +I  S ND S A  E+++G  + FA
Sbjct: 114 PDDLVPVSEKAWRTGGSKMFIEVGDRVPVSELLHGIIIVSGNDASVAMAEYLAGGTEPFA 173

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+  A ++GM+NT + N +GL   N  ++ARD A+L   +  ++P++Y  +  + F Y
Sbjct: 174 DIMNQHAARLGMENTHFVNPTGLPHDNHYSSARDLALLSRHIINDYPKHYSMYRQKHFTY 233

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
                 N N LL +  ++DG+KTG+T  +G+ +V+S + +D  +++VVMG  +++ R Q+
Sbjct: 234 GGIDQPNRNSLLWRDSSVDGLKTGWTEAAGYCLVSSAKREDMRLISVVMGTDSAEARVQE 293

Query: 280 ALELITSFLEK-KTLK 294
           + +L++      +TL+
Sbjct: 294 SQKLLSYGFRYFETLR 309


>gi|52841739|ref|YP_095538.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628850|gb|AAU27591.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 430

 Score =  321 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 97/298 (32%), Positives = 160/298 (53%), Gaps = 6/298 (2%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
                A  L+AK   + I+IDVN  ++   K  +E   PASLTKMMTLY+I   L+S ++
Sbjct: 70  FTTPAAPLLNAK---AYILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQI 126

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
           HLN  + VS+ A     S++++KE    + E  +  +I  S ND   A  E + GSE  F
Sbjct: 127 HLNDMVRVSRDAWQTGGSRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAF 186

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+ +A+ +GM+N+ + +++GL D N  TTA+D AILG  L  +FP+YY ++  + F 
Sbjct: 187 TDIMNQQAQNLGMKNSHFTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFT 246

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           Y      N N+LL +   +DGIKTG+T ++G+ +V+S +  +  ++AVV+G P+   R  
Sbjct: 247 YNGIRQPNRNRLLWRDSQVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSDSVRAD 306

Query: 279 KALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
            + +L+          HQ      +++   L K     K+    ++ + I   A   +
Sbjct: 307 DSEKLLNYGFRFFET-HQLYKSGQSIAELPLYKGT-SDKVAVGLTEDQFITIPAGQYE 362


>gi|54297421|ref|YP_123790.1| hypothetical protein lpp1466 [Legionella pneumophila str. Paris]
 gi|53751206|emb|CAH12617.1| hypothetical protein lpp1466 [Legionella pneumophila str. Paris]
          Length = 430

 Score =  321 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 97/298 (32%), Positives = 160/298 (53%), Gaps = 6/298 (2%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
                A  L+AK   + I+IDVN  ++   K  +E   PASLTKMMTLY+I   L+S ++
Sbjct: 70  FTTPAAPLLNAK---AYILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQI 126

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
           HLN  + VS+ A     S++++KE    + E  +  +I  S ND   A  E + GSE  F
Sbjct: 127 HLNDMVRVSRDAWQTGGSRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAF 186

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+ +A+ +GM+N+ + +++GL D N  TTA+D AILG  L  +FP+YY ++  + F 
Sbjct: 187 TDIMNQQAQNLGMKNSHFTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFT 246

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           Y      N N+LL +   +DGIKTG+T ++G+ +V+S +  +  ++AVV+G P+   R  
Sbjct: 247 YNGIRQPNRNRLLWRDSQVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSDSVRAD 306

Query: 279 KALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
            + +L+          HQ      +++   L K     K+    ++ + I   A   +
Sbjct: 307 DSEKLLNYGFRFFET-HQLYKSGQSIAELPLYKGT-SDKVAVGLTEDQFITIPAGQYE 362


>gi|307610210|emb|CBW99765.1| hypothetical protein LPW_15321 [Legionella pneumophila 130b]
          Length = 430

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 97/298 (32%), Positives = 160/298 (53%), Gaps = 6/298 (2%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
                A  L+AK   + I+IDVN  ++   K  +E   PASLTKMMTLY+I   L+S ++
Sbjct: 70  FTTPAAPLLNAK---AYILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQI 126

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
           HLN  + VS+ A     S++++KE    + E  +  +I  S ND   A  E + GSE  F
Sbjct: 127 HLNDMVRVSRDAWQTGGSRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAF 186

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+ +A+ +GM+N+ + +++GL D N  TTA+D AILG  L  +FP+YY ++  + F 
Sbjct: 187 TDIMNQQAQNLGMKNSHFTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFT 246

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           Y      N N+LL +   +DGIKTG+T ++G+ +V+S +  +  ++AVV+G P+   R  
Sbjct: 247 YNGIRQPNRNRLLWRDSQVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSDSVRAD 306

Query: 279 KALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
            + +L+          HQ      +++   L K     K+    ++ + I   A   +
Sbjct: 307 DSEKLLNYGFRFFET-HQLYKSGQSIAELPLYKGT-SDKVAVGLTEDQFITIPAGQYE 362


>gi|33591361|ref|NP_879005.1| putative penicillin-binding protein precursor [Bordetella pertussis
           Tohama I]
 gi|33599159|ref|NP_886719.1| putative penicillin-binding protein precursor [Bordetella
           bronchiseptica RB50]
 gi|33571003|emb|CAE40482.1| putative penicillin-binding protein precursor [Bordetella pertussis
           Tohama I]
 gi|33575205|emb|CAE30668.1| putative penicillin-binding protein precursor [Bordetella
           bronchiseptica RB50]
 gi|332380762|gb|AEE65609.1| putative penicillin-binding protein precursor [Bordetella pertussis
           CS]
          Length = 418

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 87/253 (34%), Positives = 144/253 (56%), Gaps = 2/253 (0%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
            A  +      + I +DVN  Q+      D    PASLTK+MT Y++F  LQ K+L L  
Sbjct: 64  AAVPVPTIAAKAWITVDVNSGQVLAASNADMKVEPASLTKIMTAYVVFNALQEKRLTLEQ 123

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           Q+PVS+ A     S+++++ +   T ++    +I +S ND S A  E + GSE  FA LM
Sbjct: 124 QVPVSEHAWRTGGSRMFIEPRKPVTVDELNQGMIVQSGNDASVALAEAVGGSESAFAALM 183

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
           + +A+++GM+NT + N++GL D   +TTARD A L   L  ++P YY Y+  + + Y   
Sbjct: 184 NQEAQRLGMRNTHFMNSTGLPDPQHVTTARDLATLAAHLISDYPDYYHYYKQKSYTYNKI 243

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
              N N+LL    ++DG+KTG+T ++G+ +V++    D  I+ V++G  +   R +++L+
Sbjct: 244 TQPNRNRLLWADPSVDGMKTGHTDSAGYCLVSTAMRGDRRILTVLVGADSEATRAEESLK 303

Query: 283 LITS-FLEKKTLK 294
           L+   F    T+K
Sbjct: 304 LLNWSFQNFDTVK 316


>gi|54294448|ref|YP_126863.1| hypothetical protein lpl1517 [Legionella pneumophila str. Lens]
 gi|53754280|emb|CAH15757.1| hypothetical protein lpl1517 [Legionella pneumophila str. Lens]
          Length = 430

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 97/298 (32%), Positives = 160/298 (53%), Gaps = 6/298 (2%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
                A  L+AK   + I+IDVN  ++   K  +E   PASLTKMMTLY+I   L+S ++
Sbjct: 70  FTTPAAPLLNAK---AYILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQI 126

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
           HLN  + VS+ A     S++++KE    + E  +  +I  S ND   A  E + GSE  F
Sbjct: 127 HLNDMVRVSRDAWQTGGSRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAF 186

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+ +A+ +GM+N+ + +++GL D N  TTA+D AILG  L  +FP+YY ++  + F 
Sbjct: 187 TDIMNQQAQNLGMKNSHFTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFT 246

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           Y      N N+LL +   +DGIKTG+T ++G+ +V+S +  +  ++AVV+G P+   R  
Sbjct: 247 YNGIRQPNRNRLLWRDSQVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSESVRAD 306

Query: 279 KALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
            + +L+          HQ      +++   L K     K+    ++ + I   A   +
Sbjct: 307 DSEKLLNYGFRFFET-HQLYKSGQSIAELPLYKGT-SDKVAVGLTEDQFITIPAGQYE 362


>gi|78485976|ref|YP_391901.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thiomicrospira crunogena
           XCL-2]
 gi|78364262|gb|ABB42227.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Thiomicrospira crunogena XCL-2]
          Length = 396

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 94/327 (28%), Positives = 162/327 (49%), Gaps = 28/327 (8%)

Query: 28  IQLMGKILFLSIIMISMASE-------------LHAKPKYSS---IVIDVNKNQMTGFKQ 71
           I+++G    L  I +  A++             + + PK ++   I+ID N  ++     
Sbjct: 2   IKILGLFFTLFAIALPSAAKTVQSQPVAPIPHVVPSAPKTAAEAYILIDFNSGKIIASNH 61

Query: 72  DE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
            E    PASLTK+MT Y++   L +  +HL+  + +S  A     SK++++     + + 
Sbjct: 62  PEMRVEPASLTKIMTGYVVINELANGNIHLDDMVTISPKAWKMPGSKMFIEVGKKVSVKN 121

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            I  ++ +S ND S A  E I+GSE+ FA LM+  A  +GM  T Y NA+GL + +  TT
Sbjct: 122 LIKGMVIQSGNDASVALAEHIAGSEEVFAELMNKYAASLGMDGTHYMNATGLPNPDHYTT 181

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           A+D +IL   L   FP+ YK+++ +KF +      N NKLL +  ++DG+KTG+T ++G+
Sbjct: 182 AQDLSILARALITKFPEEYKWYAQKKFTFNGITQYNRNKLLWQDPSVDGLKTGHTESAGY 241

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKD----- 302
            +V S +  D  +++VV+G   ++ R Q++ +L+     F E   L        D     
Sbjct: 242 CLVASAKRDDMRLISVVLGTDGAKTRIQESQKLLNYGFRFFETHKLYDNGQRLNDARIWE 301

Query: 303 ---NLSSTSLKKSLMIKKLKRTYSQFK 326
              +     L   L +   +  Y   K
Sbjct: 302 GQKDSVGLGLTDDLYVTIPRGQYKNLK 328


>gi|33594884|ref|NP_882527.1| putative penicillin-binding protein precursor [Bordetella
           parapertussis 12822]
 gi|33564960|emb|CAE39907.1| putative penicillin-binding protein precursor [Bordetella
           parapertussis]
          Length = 418

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 87/253 (34%), Positives = 145/253 (57%), Gaps = 2/253 (0%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
            A  +      + I +DVN  Q+      D    PASLTK+MT Y++F  LQ K+L L  
Sbjct: 64  AAVPVPTIAAKAWITVDVNSGQVLAASNADMKVEPASLTKIMTAYVVFNALQEKRLTLEQ 123

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           Q+PVS+ A     S+++++ +   T ++    +I +S ND S A  E + GSE  FA LM
Sbjct: 124 QVPVSEHAWRTGGSRMFIEPRKPVTVDELNQGMIVQSGNDASVALAEAVGGSESAFAALM 183

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
           + +A+++GM+NT + N++GL D   +TTARD A L + L  ++P YY Y+  + + Y   
Sbjct: 184 NQEAQRLGMRNTHFMNSTGLPDPQHVTTARDLATLAVHLLSDYPDYYHYYKQKSYTYNKI 243

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
              N N+LL    ++DG+KTG+T ++G+ +V++    D  I+ V++G  +   R +++L+
Sbjct: 244 TQPNRNRLLWADPSVDGMKTGHTDSAGYCLVSTAMRGDRRILTVLVGADSEATRAEESLK 303

Query: 283 LITS-FLEKKTLK 294
           L+   F    T+K
Sbjct: 304 LLNWSFQNFDTVK 316


>gi|187476650|ref|YP_784673.1| penicillin-binding protein [Bordetella avium 197N]
 gi|115421236|emb|CAJ47741.1| penicillin-binding protein [Bordetella avium 197N]
          Length = 419

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 89/275 (32%), Positives = 149/275 (54%), Gaps = 2/275 (0%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
            A         + I IDVN  Q+      D+   PASLTK+MT Y++F  L  K+L L+ 
Sbjct: 65  AAVPAPTIAARAWIAIDVNSGQVLAASNPDQKVEPASLTKVMTAYVVFNALDEKRLTLDQ 124

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           Q+PVS+ A     S+++++ +   T ++ I  +I +S ND S A  E + GSE  FA LM
Sbjct: 125 QVPVSQHAWRTGGSRMFIEPRKPVTVDELIQGMIVQSGNDASVALAEAVGGSETAFAALM 184

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
           + +A+++GM+ T + NA+GL D   ITT RD A L   L  + P+YY Y+  + F Y   
Sbjct: 185 NEQAERLGMKGTHFMNATGLPDPQHITTVRDLATLATHLVSDHPEYYHYYKQKGFTYNKI 244

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
              N N+LL    ++DG+KTG+T ++G+ ++++    D  ++ V++G  +   R +++L+
Sbjct: 245 TQPNRNRLLWADPSVDGMKTGHTDSAGYCLISTALRGDRRVLTVLVGADSEATRAEESLK 304

Query: 283 LITS-FLEKKTLKHQQTHRKDNLSSTSLKKSLMIK 316
           L+   F    T+K     +    +     K+  +K
Sbjct: 305 LLNWSFQNFDTVKLYDKSQPGLDARVWEGKAENVK 339


>gi|296107091|ref|YP_003618791.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila 2300/99
           Alcoy]
 gi|295648992|gb|ADG24839.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila 2300/99
           Alcoy]
          Length = 407

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 97/298 (32%), Positives = 160/298 (53%), Gaps = 6/298 (2%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
                A  L+AK   + I+IDVN  ++   K  +E   PASLTKMMTLY+I   L+S ++
Sbjct: 47  FTTPAAPLLNAK---AYILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQI 103

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
           HLN  + VS+ A     S++++KE    + E  +  +I  S ND   A  E + GSE  F
Sbjct: 104 HLNDLVRVSRDAWQTGGSRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAF 163

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+ +A+ +GM+N+ + +++GL D N  TTA+D AILG  L  +FP+YY ++  + F 
Sbjct: 164 TDIMNQQAQNLGMKNSHFTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFT 223

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           Y      N N+LL +   +DGIKTG+T ++G+ +V+S +  +  ++AVV+G P+   R  
Sbjct: 224 YNGIRQPNRNRLLWRDSQVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSDSVRAD 283

Query: 279 KALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
            + +L+          HQ      +++   L K     K+    ++ + I   A   +
Sbjct: 284 DSEKLLNYGFRFFET-HQLYKSGQSIAELPLYKGT-SDKVAVGLTEDQFITIPAGQYE 339


>gi|148359042|ref|YP_001250249.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila str.
           Corby]
 gi|148280815|gb|ABQ54903.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila str.
           Corby]
          Length = 430

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 97/298 (32%), Positives = 160/298 (53%), Gaps = 6/298 (2%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
                A  L+AK   + I+IDVN  ++   K  +E   PASLTKMMTLY+I   L+S ++
Sbjct: 70  FTTPAAPLLNAK---AYILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQI 126

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
           HLN  + VS+ A     S++++KE    + E  +  +I  S ND   A  E + GSE  F
Sbjct: 127 HLNDLVRVSRDAWQTGGSRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAF 186

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+ +A+ +GM+N+ + +++GL D N  TTA+D AILG  L  +FP+YY ++  + F 
Sbjct: 187 TDIMNQQAQNLGMKNSHFTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFT 246

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           Y      N N+LL +   +DGIKTG+T ++G+ +V+S +  +  ++AVV+G P+   R  
Sbjct: 247 YNGIRQPNRNRLLWRDSQVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSDSVRAD 306

Query: 279 KALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
            + +L+          HQ      +++   L K     K+    ++ + I   A   +
Sbjct: 307 DSEKLLNYGFRFFET-HQLYKSGQSIAELPLYKGT-SDKVAVGLTEDQFITIPAGQYE 362


>gi|254491459|ref|ZP_05104638.1| beta-lactamase, putative [Methylophaga thiooxidans DMS010]
 gi|224462937|gb|EEF79207.1| beta-lactamase, putative [Methylophaga thiooxydans DMS010]
          Length = 382

 Score =  318 bits (815), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 81/297 (27%), Positives = 151/297 (50%), Gaps = 12/297 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
            I+           + ++ D +  ++   +  DE   PAS+TK+MT Y++   L +  + 
Sbjct: 24  AIAPKPSAPNVAAKAYVLTDYDSGRVLAEENADERLPPASITKLMTSYVVSHELHAGNIQ 83

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           L+ ++ +S+ A     S+ +++  T  + E  +  +I +S ND + A  E I+GSE+ FA
Sbjct: 84  LDDEVLISEKAWRMVGSRSFIEVNTKVSVEALLRGMIVQSGNDAAVALAEHIAGSEETFA 143

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+  A+++GM  T Y+NA+GL D +  TTARD A+L   L ++FP +Y+++S +++ Y
Sbjct: 144 QMMNQYAQQLGMYGTNYRNATGLPDPDHYTTARDIAVLSAALIRDFPAHYEWYSEKEYTY 203

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            +    N NKLL + +++DG+KTG+T  +G+ +  S +     +++VV+G  +   R Q+
Sbjct: 204 NDITQHNRNKLLWRDNSVDGLKTGHTEEAGYCLAASAKRSGMRLISVVLGTRSENARAQE 263

Query: 280 ALELIT---SFLEKKTLKHQQT--------HRKDNLSSTSLKKSLMIKKLKRTYSQF 325
             +L      F E   L               K ++    L   L +   +  Y   
Sbjct: 264 TQKLFNYGFRFFETHQLYQANVGVTESKVWKGKQDIVELGLPTDLSVTVPRGQYENL 320


>gi|304310091|ref|YP_003809689.1| Penicillin-binding protein 5 precursor
           (D-ala-D-ala-carboxypeptidase) [gamma proteobacterium
           HdN1]
 gi|301795824|emb|CBL44023.1| Penicillin-binding protein 5 precursor
           (D-ala-D-ala-carboxypeptidase) [gamma proteobacterium
           HdN1]
          Length = 385

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 99/320 (30%), Positives = 159/320 (49%), Gaps = 20/320 (6%)

Query: 28  IQLMGKILFLSIIMISMAS-----ELHAKP---KYSSIVIDVNKNQMTGFKQ-DEPRYPA 78
           I  +   LF+  +  S AS     EL   P     S I+I+ +  Q+      DE   PA
Sbjct: 2   IGFIANTLFIGALTASNASFAAETELPTPPQLAASSWILIEPSSGQVLVEHNADEQLPPA 61

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           SLTKMMT Y+  + ++      + ++ VS+ A     SK++++  T       +  +I +
Sbjct: 62  SLTKMMTSYVAADKIKEGLAGWDDEVLVSEKAWRMGGSKMFIRVGTQVKIRDLMRGIIIQ 121

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND S A  E I+GSE+ FA LM+  AK+IGM +T Y NA+GL D +  TTARD AIL 
Sbjct: 122 SGNDASVALAEHIAGSEESFADLMNQTAKRIGMTHTHYVNATGLPDPSHYTTARDLAILA 181

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             +  + P+ Y+ +S ++F Y N    N N LL + +++DGIKTG+T+ +G+ +V S + 
Sbjct: 182 QHVIFDHPEDYELYSEKEFLYNNIKQPNRNLLLWRDNSVDGIKTGHTKEAGYCLVASAKR 241

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFL----EKKTLKHQQTHRKDNL-------SST 307
               +VAVVM   + + R  + ++L+T         ++    +      +          
Sbjct: 242 DGMRLVAVVMNTNSEKARASETMKLLTYGFRFYENVRSYSAGEVLAAPEIWFGSTPTVKL 301

Query: 308 SLKKSLMIKKLKRTYSQFKK 327
            L K L++   + T    K 
Sbjct: 302 GLDKDLVLTIPRGTQQDVKA 321


>gi|317401414|gb|EFV82047.1| penicillin-binding protein [Achromobacter xylosoxidans C54]
          Length = 356

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 86/252 (34%), Positives = 141/252 (55%), Gaps = 2/252 (0%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A         + IVIDVN  Q       +    PASLTK+MT Y++F  L+ K+L L   
Sbjct: 3   AVPAPTIAAKAWIVIDVNSGQTLAASNPDMKVEPASLTKIMTAYVVFNALEEKRLTLEQT 62

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           +PVS+ A     S+++++ +   T ++    +I +S ND S A  E + GSE  FA LM+
Sbjct: 63  VPVSEHAWRTGGSRMFIEPRKPVTVDELNQGMIVQSGNDASVALAEAVGGSEAAFATLMN 122

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI 223
            +A+++GM+NT + NA+GL D   +T+ RD A L   L  + PQ++ Y+  + F Y    
Sbjct: 123 QEAERLGMRNTHFMNATGLPDPQHMTSTRDLATLSAHLITDHPQFFHYYKQKSFTYNKIT 182

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
             N N+LL    ++DG+KTG+T ++G+ +V++    D  I+ VV+G  +   R +++L+L
Sbjct: 183 QPNRNRLLWADPSVDGMKTGHTDSAGYCLVSTAVRGDRRILVVVVGTDSEATRAEESLKL 242

Query: 284 ITS-FLEKKTLK 294
           +   F    T+K
Sbjct: 243 LNWSFQNFDTVK 254


>gi|270160121|ref|ZP_06188777.1| D-alanyl-D-alanine carboxypeptidase DacC [Legionella longbeachae
           D-4968]
 gi|289165102|ref|YP_003455240.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Legionella longbeachae NSW150]
 gi|269988460|gb|EEZ94715.1| D-alanyl-D-alanine carboxypeptidase DacC [Legionella longbeachae
           D-4968]
 gi|288858275|emb|CBJ12143.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Legionella longbeachae NSW150]
          Length = 422

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 100/298 (33%), Positives = 161/298 (54%), Gaps = 6/298 (2%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKL 98
           ++   A  L+AK   + I+IDVN  ++   K  E R  PASLTKMMTLY+I   L  +++
Sbjct: 62  LVTPAAPILNAK---AYILIDVNSGKIIAEKNSEERLPPASLTKMMTLYVISNALHHEQI 118

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
           HL   + VS+ A     S++++KE      E  +  +I  S ND   A  E + G+E  F
Sbjct: 119 HLTDNVRVSREAWKIGGSRMFIKEGQQVPVEDLLKGIIVDSGNDACVAMAEHLGGTENSF 178

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             LM+ +A+ +GM+N+ + +++GL D N  TTA+D AILG  L  +FPQYY+++  + F 
Sbjct: 179 TDLMNQQAQNLGMKNSHFTDSTGLPDPNLYTTAKDLAILGRALIIDFPQYYEWYKQKWFT 238

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           Y      N N+LL + + +DGIKTG+T ++GF +V+S +  +  ++AVV+G PT   R  
Sbjct: 239 YNGIRQPNRNRLLWRDNQVDGIKTGHTNDAGFCLVSSAKRDNMRLLAVVLGEPTDSSRAD 298

Query: 279 KALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
            + +L+          HQ      +++   L K   I K+    ++ + I       Q
Sbjct: 299 DSEKLLNYGFRFFET-HQLYKSGQSIAELPLYKG-QIDKVAVGLNEDQYITIPTGQYQ 354


>gi|114319338|ref|YP_741021.1| penicillin-binding protein 6 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225732|gb|ABI55531.1| penicillin-binding protein 6 [Alkalilimnicola ehrlichii MLHE-1]
          Length = 381

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 83/261 (31%), Positives = 142/261 (54%), Gaps = 7/261 (2%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           I    A  + A      +++D    Q+      DE R PASL KMMT Y++F  L+   +
Sbjct: 26  IPTPAAPSVGAAAH---VLMDARSGQVLAENNADEARDPASLVKMMTAYVVFSELREGNI 82

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            L+  + VS+ A     S+++++          I  +I +S ND   A  E I+G E+ F
Sbjct: 83  DLDELVTVSERAWRTPGSRMFIEPGDNVRVGDLIRGVIIQSGNDACVALAEHIAGDEQTF 142

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           A +M++ A+++GM+NT + NA+GL D+   TTARD A+L   + ++FP+YY ++S R F 
Sbjct: 143 AQVMNSYAEQLGMENTYFANATGLPDEAMKTTARDTALLARAIVRDFPEYYGWYSERSFT 202

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           + +   +N N+LL +  ++DG+KTG+T  +G+N+  S   +   +++VV+G  + Q R  
Sbjct: 203 WNDIRQSNRNRLLWRDSSVDGLKTGHTSAAGYNLAASAEREGTRLISVVLGTASEQARAD 262

Query: 279 KALELIT---SFLEKKTLKHQ 296
           +   L+     F E   L  +
Sbjct: 263 QTQSLLNYGFRFFETHRLYDE 283


>gi|307823377|ref|ZP_07653606.1| Beta-lactamase [Methylobacter tundripaludum SV96]
 gi|307735362|gb|EFO06210.1| Beta-lactamase [Methylobacter tundripaludum SV96]
          Length = 389

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 91/311 (29%), Positives = 164/311 (52%), Gaps = 14/311 (4%)

Query: 31  MGKILFLSIIMISMASEL-------HAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPAS 79
           +  +LF S+++ + A+          A P  ++   I+++ +  ++      D    PAS
Sbjct: 7   LPVLLFFSLLIATTAANAEDAEITTPAAPTIAASGYILMNYDTGKVLAENNADVKLAPAS 66

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LTK+M++Y++F  + +  LHLN  + +S+ A     S+++++       E  +  +I +S
Sbjct: 67  LTKIMSVYVVFREISNGHLHLNDLVTISQKAWETPGSRMFIEVGNQVKVEDLLKGVIIQS 126

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND S A  E I+G E  FA +M+  A+++GM+N+ +++++GL   N  TTARD AIL  
Sbjct: 127 GNDASVALAEHIAGDETTFADMMNQHAERLGMKNSHFQDSNGLPIDNHYTTARDLAILSQ 186

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            L K FP YY++FS ++F + N +  N N+LL++   +DGIKTG+T  +G+ +V S    
Sbjct: 187 ALIKEFPDYYRWFSQKEFTFNNIVQHNRNQLLSRDETVDGIKTGFTDAAGYCLVASALRN 246

Query: 260 DDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIK 316
           D  +++VVMG  +   R  +   L+     F E   L   +T   +        K+L + 
Sbjct: 247 DMRLISVVMGASSPNARANENQNLLNYGFRFFEAHKLYQGKTSLAEARVWKGDTKNLQLG 306

Query: 317 KLKRTYSQFKK 327
             +  Y+   +
Sbjct: 307 LAEDLYATIPR 317


>gi|94501220|ref|ZP_01307742.1| D-alanyl-D-alanine carboxypeptidase [Oceanobacter sp. RED65]
 gi|94426647|gb|EAT11633.1| D-alanyl-D-alanine carboxypeptidase [Oceanobacter sp. RED65]
          Length = 380

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 95/285 (33%), Positives = 156/285 (54%), Gaps = 6/285 (2%)

Query: 30  LMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
           L+   LFL   +   A  +  KP      S I++D N  ++      D+   PASLTK+M
Sbjct: 4   LIASFLFLFSTVTFSAPSIIPKPPSLAASSYILMDANSGEVLVEHNADKVLPPASLTKLM 63

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T +I FE L    + L+ ++ VS  A     S+++++E T    E  +  +I +S ND S
Sbjct: 64  TAFIAFEELSYGNIALDEKVRVSVKAWKAEGSRMFIREGTTVPVEDLLRGIIIQSGNDAS 123

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  E ISG+E  FA +M+  A  +GM N+ +KNA+GL  +   ++ARD A L   +  N
Sbjct: 124 IAMAEHISGTESSFADIMNQYAVSLGMTNSQFKNATGLPSEGHHSSARDMATLARAIIFN 183

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
             Q+Y  +S +KF+Y N   TN N+LL     +DG+KTG+T  +G+ +V+S + +D  ++
Sbjct: 184 HKQHYPIYSEKKFKYNNIEQTNRNRLLFWNDKVDGLKTGHTEEAGYCLVSSAQDEDMRLI 243

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSL 309
           AVVMG  + + R +++ +L+T         H+    K++L +T +
Sbjct: 244 AVVMGANSERARARESNKLLTYGFRYFE-SHRLYESKESLQTTDV 287


>gi|292490707|ref|YP_003526146.1| beta-lactamase [Nitrosococcus halophilus Nc4]
 gi|291579302|gb|ADE13759.1| Beta-lactamase [Nitrosococcus halophilus Nc4]
          Length = 382

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 83/277 (29%), Positives = 149/277 (53%), Gaps = 4/277 (1%)

Query: 34  ILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYII 89
           +LF+   +      + A P  S+   I+ D    Q+    + D+   PAS+TK+MT Y++
Sbjct: 15  LLFMGGTVWGQPLPIPAAPSLSAKAYILQDFATGQVLAEAQADQRVEPASITKLMTAYVV 74

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           F  L+   +HL  ++ +S+ A     S+ +++  +  + E  +  +I +S ND S A  E
Sbjct: 75  FAELKRGNIHLEDKVLISEKAWRTGGSRTFIEVDSRVSVETLLQGMIIQSGNDASVALAE 134

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
           ++ G+E+ FA LM+ +A+ +GM  + + N++GL  +N   T RD A L   L ++FP+YY
Sbjct: 135 YVGGTEEIFATLMNQQAQALGMTGSHFVNSTGLPHENHYMTTRDIATLARALIRDFPEYY 194

Query: 210 KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            ++S ++F Y N    N N LL +  ++DG KTGYT  +G+ +V+S   +   ++AVVMG
Sbjct: 195 GWYSEQEFTYNNITQYNRNVLLRRDPSVDGCKTGYTEAAGYCLVSSAMREGMRLIAVVMG 254

Query: 270 MPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSS 306
               + R +++L L+         +     R+   S+
Sbjct: 255 TKGPKIRARESLALLNYGFRFYDTRSLYAAREPVTSA 291


>gi|258544105|ref|ZP_05704339.1| serine-type D-Ala-D-Ala carboxypeptidase [Cardiobacterium hominis
           ATCC 15826]
 gi|258520658|gb|EEV89517.1| serine-type D-Ala-D-Ala carboxypeptidase [Cardiobacterium hominis
           ATCC 15826]
          Length = 374

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 90/268 (33%), Positives = 142/268 (52%), Gaps = 4/268 (1%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           I R   L+   ++  ++    A EL   P  S I++D    Q    K  DE   PAS+TK
Sbjct: 4   ILRLFTLIIAAVYSGVVFAQAAPEL---PVKSYILMDAASGQTLVGKNADEKLPPASITK 60

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT Y++ E L S KL + T I VS+ A  Q  S+++++       E  +  LI +S ND
Sbjct: 61  LMTAYLVVEALDSGKLTMETPITVSQNAYKQEGSRMFIEVNKQVRVEDLLQGLIVQSGND 120

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E++ GS + F  +M+ KA ++GM++T Y N +GL D    TTARD AIL   + 
Sbjct: 121 AAMALAEYLGGSTEGFTGMMNRKAAELGMKDTHYTNPTGLPDPQHYTTARDIAILSRHII 180

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
            + PQYY Y+  + + Y      N N+LL +  +IDG+KTG+T+ +G+ + +S +  D  
Sbjct: 181 NDHPQYYHYYGQKSYTYNKIKQDNRNRLLWRNASIDGLKTGHTKEAGYCLASSEKRGDIR 240

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEK 290
            +AVV+G     +R   +  L      +
Sbjct: 241 FIAVVLGADKESDRYDASQALFNYGFAQ 268


>gi|257092335|ref|YP_003165976.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044859|gb|ACV34047.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 378

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 89/272 (32%), Positives = 154/272 (56%), Gaps = 7/272 (2%)

Query: 41  MISMASELHAKPK---YSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSK 96
           +++ A +L   P     S ++I+    Q    +  D+   PASLTK+MT Y+ F  L+  
Sbjct: 17  VVASAQQLPTPPALAAKSWLLIEAASGQELAAQAPDQRLDPASLTKLMTAYLSFAALKQG 76

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
            L ++  +PVS+ A     S+++++  T    E  +  +I +S ND   A  E I+G E+
Sbjct: 77  TLKVDQPVPVSQKAWKTGGSRMFIQVGTQVKVEDLLKGMIVQSGNDACVALAEAIAGDEE 136

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP-QYYKYFSIR 215
            FA +M+ +A+++GM+ + ++N+SGL D    TTARD A L   L ++FP +Y KY+S++
Sbjct: 137 NFAQMMNREAQRLGMKGSSFRNSSGLPDPQHYTTARDLATLAGALIRDFPDEYAKYYSLK 196

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           +FRY N    N N+LL     +DG+KTG+T  +G+ +V+S +     +++VV+G P+   
Sbjct: 197 EFRYNNITQPNRNRLLWIDPTVDGLKTGHTEAAGYCLVSSAKRGPRRLLSVVLGAPSDSV 256

Query: 276 RDQKALELITSFLEKKTLKHQQTHRKDNLSST 307
           R Q++L+L+    +       Q + K+   ST
Sbjct: 257 RAQESLKLLNYGFQFY--DAVQVYAKNEEVST 286


>gi|293602524|ref|ZP_06684970.1| D-alanyl-D-alanine carboxypeptidase DacA [Achromobacter piechaudii
           ATCC 43553]
 gi|292819286|gb|EFF78321.1| D-alanyl-D-alanine carboxypeptidase DacA [Achromobacter piechaudii
           ATCC 43553]
          Length = 394

 Score =  316 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 152/306 (49%), Gaps = 15/306 (4%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKL 98
           +    A  + AK   + IVIDVN  Q       +    PASLTK+MT Y++F  L+ K+L
Sbjct: 39  VSAVPAPTIAAK---AWIVIDVNSGQTLAASNPDMKVEPASLTKIMTAYVVFNALEEKRL 95

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            L   +PVS+ A     S+++++ +   T ++    +I +S ND S A  E + GSE  F
Sbjct: 96  TLEQTVPVSEHAWRTGGSRMFIEPRKPVTVDELNQGMIVQSGNDASVALAEAVGGSESAF 155

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           A LM+ +A+++GM+NT + NA+GL D   +T+ RD A L   L  + P ++ Y+  + + 
Sbjct: 156 AALMNQEAERLGMKNTHFMNATGLPDPQHVTSTRDLATLSSHLITDHPDFFHYYKQKSYT 215

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           Y      N N+LL    ++DG+KTG+T ++G+ +V++    D  I+ VV+G  +   R +
Sbjct: 216 YNKITQPNRNRLLWADPSVDGMKTGHTDSAGYCLVSTAMRGDRRILVVVVGTDSEATRAE 275

Query: 279 KALELITS-FLEKKTLK----------HQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
           ++L+L+   F    T+K           +              K + I   +      K 
Sbjct: 276 ESLKLLNWSFQNFDTVKLFDKSQPGIDARVWEGTAENVKLGPPKPVSIAVPRGKAGDLKP 335

Query: 328 IDAKAH 333
           +  +  
Sbjct: 336 VAQRTD 341


>gi|254496461|ref|ZP_05109338.1| D-alanyl-D-alanine carboxypeptidase [Legionella drancourtii LLAP12]
 gi|254354317|gb|EET12975.1| D-alanyl-D-alanine carboxypeptidase [Legionella drancourtii LLAP12]
          Length = 413

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 95/260 (36%), Positives = 147/260 (56%), Gaps = 7/260 (2%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKL 98
           ++   A  L+AK   + I+IDVN  ++   K  E R  PASLTKMMTLY+I   L  +++
Sbjct: 53  LVTPAAPILNAK---AYILIDVNSGKVIAEKNSEERLPPASLTKMMTLYVISNALHHEQI 109

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
           HL   + VSK A     S++++KE      E  +  +I  S ND   A  E I G+E  F
Sbjct: 110 HLTDSVRVSKDAWKIGGSRMFIKEGQQVPVEDLLKGIIVDSGNDACVAMAEHIGGTENSF 169

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+ +A+ +GMQN+ + +++GL D N  TTA+D AILG  L  +FPQYY ++  + F 
Sbjct: 170 TDIMNQQAQNLGMQNSHFTDSTGLPDPNLYTTAKDLAILGRALIVDFPQYYDWYKQKWFT 229

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           Y      N N+LL + + +DG+KTG+T  +GF +V+S + ++  ++AVV+G P    R  
Sbjct: 230 YNGIRQPNRNRLLWRDNQVDGLKTGHTSEAGFCLVSSAKRENMRLLAVVLGEPNDSSRAD 289

Query: 279 KALELIT---SFLEKKTLKH 295
            + +L+     F E   L  
Sbjct: 290 DSEKLLNYGFRFFETHQLYK 309


>gi|302389828|ref|YP_003825649.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter
           oceani DSM 16646]
 gi|302200456|gb|ADL08026.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter
           oceani DSM 16646]
          Length = 390

 Score =  315 bits (808), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 93/317 (29%), Positives = 157/317 (49%), Gaps = 21/317 (6%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMM 84
           R I L+  I F+S+     A  L      S+I+ID     +   K   E   PAS+TK+M
Sbjct: 11  RKIALLSLIFFISVNFTVYAQPLPEIKSPSAILIDAGTGTVLYEKNAHEKLEPASITKIM 70

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TL +  E ++  K+ L  ++ +S+ A     S+++L      T E  +  +   SAND S
Sbjct: 71  TLLVALEAIEQGKVKLTDKVKISERAWKTGGSQVFLGPGEEQTLETLLKCITIASANDAS 130

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  E+I GS + F  +M++KAK +GM NT + N  GL D N  TTA D A++   L K 
Sbjct: 131 VAVAEYIGGSVEGFVKMMNDKAKALGMNNTNFTNPHGLSDPNHYTTAYDIALMSRELVK- 189

Query: 205 FPQYYKYFSIR----KFRYRNR---IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
           +P+++++ ++     +   + R   ++ N NKLL K   +DG+KTG+   +G+    S +
Sbjct: 190 YPKFFEWSTVWIDYLEHTDKEREATMLANTNKLLGKYEGLDGLKTGFHAKAGYCFAGSAK 249

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKK 317
             D  +++VV+  P+S ER +   +L+     + +            S    KK+ ++K+
Sbjct: 250 RGDLRLISVVLNSPSSAERFEDTKKLLDYGFGRYS------------SVQVAKKNSVLKR 297

Query: 318 LKRTYSQFKKIDAKAHS 334
           L       K++D  A  
Sbjct: 298 LPVEKGVKKEVDVVASD 314


>gi|56477153|ref|YP_158742.1| putative penicillin-binding protein [Aromatoleum aromaticum EbN1]
 gi|56313196|emb|CAI07841.1| putative penicillin-binding protein [Aromatoleum aromaticum EbN1]
          Length = 401

 Score =  315 bits (807), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 82/290 (28%), Positives = 161/290 (55%), Gaps = 4/290 (1%)

Query: 16  TYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDE 73
           + P+  +  Q  ++L   +L   +   + A  + A      S +++D    Q+   ++ +
Sbjct: 15  SLPHLPVLPQVLMRLFIVLLLALLAFPASAQNVPAPTLAAKSWLLMDHATGQVLAAQEPD 74

Query: 74  PR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
            R  PASLTK+MT Y+ F  L++  + L+  +PVS  A     S+++++     T  +  
Sbjct: 75  ARIEPASLTKLMTAYLTFAALKNGTITLDQTVPVSNKAWRSEGSRMFIEPNRPVTVGELT 134

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             +I +S ND   A  E ++GSE+ FA +M+ +A+++GM+NT + N++GL D    TTAR
Sbjct: 135 SGMIIQSGNDACVALAELLAGSEEAFAHMMNAEAQRLGMKNTHFTNSTGLPDPQLYTTAR 194

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           D  +L   + ++FP+YY+Y+S +++ Y      N N+LL     +DG+KTG+T ++G+ +
Sbjct: 195 DLGLLAAAIVRDFPEYYRYYSQKEYTYNKITQPNRNRLLWLDTTVDGLKTGHTSSAGYCL 254

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK-KTLKHQQTHRK 301
           ++S +     +++V++G  +   R Q++L+L+    +   T+K     ++
Sbjct: 255 ISSAQRGPRRLISVMLGTDSDTIRAQESLKLLNYGFQFHDTVKLYSADQE 304


>gi|327482406|gb|AEA85716.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas stutzeri DSM 4166]
          Length = 385

 Score =  314 bits (806), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 80/283 (28%), Positives = 143/283 (50%), Gaps = 4/283 (1%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           +QR I L    +  ++    +          S +++D    ++      DE   PASLTK
Sbjct: 7   VQRFIVLTLLTVAPTVWAAQILPSAPQLAAKSYMLMDAASGEVLVEHNGDERLPPASLTK 66

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT YI    +Q  ++  N  + VS+ A     S+++++  T  + +  +  +I +S ND
Sbjct: 67  LMTAYIATLEIQKGQISDNDMVTVSEKAWRTGGSRMFIQVNTQVSVDDLLHGIIIQSGND 126

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            S A  E I+GSE+ FA +M++ A+++GM NT + NA+GL      ++A D A L   + 
Sbjct: 127 ASVAMAEHIAGSEEAFADMMNSTAQRLGMSNTHFVNATGLPHPEHYSSANDMAKLARAII 186

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
              P +Y  ++ ++F + N    N N LL +   +DG+KTG+T  +G+ +V S    +  
Sbjct: 187 YEDPAHYAIYAQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTEEAGYCLVASAVRDNMR 246

Query: 263 IVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKD 302
           +++VV G  + Q R  +  +L+T    F E +T   + T   +
Sbjct: 247 LISVVFGTDSEQARAAETQKLLTYGFRFFETRTFYQKGTELAE 289


>gi|311109424|ref|YP_003982277.1| D-alanyl-D-alanine carboxypeptidase [Achromobacter xylosoxidans A8]
 gi|310764113|gb|ADP19562.1| D-alanyl-D-alanine carboxypeptidase DacC 2 [Achromobacter
           xylosoxidans A8]
          Length = 362

 Score =  314 bits (806), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 86/257 (33%), Positives = 144/257 (56%), Gaps = 5/257 (1%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKL 98
           +    A  + AK   + IV+DVN  Q       +    PASLTK+MT Y++F  L  K+L
Sbjct: 7   VSAVPAPTIAAK---AWIVMDVNSGQTLAASNPDMKVEPASLTKIMTAYVVFNALDEKRL 63

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            L   +PVS+ A     S+++++ +   T ++    +I +S ND S A  E + GSE  F
Sbjct: 64  TLEQTVPVSERAWRTGGSRMFIEPRKPVTVDELNQGMIVQSGNDASVALAEAVGGSEASF 123

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           A LM+ +A+++GM+NT + NA+GL D   +T+ RD AIL   L  + P ++ Y+  + + 
Sbjct: 124 ASLMNQEAERLGMRNTHFMNATGLPDPQHMTSTRDLAILSSHLITDHPDHFHYYKQKSYT 183

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           Y      N N+LL    ++DG+KTG+T ++G+ +V++    D  I+ VV+G  +   R +
Sbjct: 184 YNKITQPNRNRLLWADPSVDGMKTGHTDSAGYCLVSTAVRGDRRILVVVVGTDSEATRAE 243

Query: 279 KALELITS-FLEKKTLK 294
           ++L+L+   F    T+K
Sbjct: 244 ESLKLLNWSFQNFDTVK 260


>gi|146284089|ref|YP_001174242.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas stutzeri A1501]
 gi|145572294|gb|ABP81400.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas stutzeri A1501]
          Length = 385

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 80/283 (28%), Positives = 143/283 (50%), Gaps = 4/283 (1%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           +QR I L    +  ++    +          S +++D    ++      DE   PASLTK
Sbjct: 7   VQRFIVLTLLTVAPTVWAAQILPSAPQLAAKSYMLMDAASGEVLVEHNGDERLPPASLTK 66

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT YI    +Q  ++  N  + VS+ A     S+++++  T  + +  +  +I +S ND
Sbjct: 67  LMTAYIATLEIQKGQISDNDMVTVSEKAWRTGGSRMFIQVNTQVSVDDLLHGIIIQSGND 126

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            S A  E I+GSE+ FA +M++ A+++GM NT + NA+GL      ++A D A L   + 
Sbjct: 127 ASVAMAEHIAGSEEAFADMMNSTAQRLGMSNTHFVNATGLPHPEHYSSANDMAKLARAII 186

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
              P +Y  ++ ++F + N    N N LL +   +DG+KTG+T  +G+ +V S    +  
Sbjct: 187 YEDPAHYAIYAQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTEEAGYCLVASAVRDNMR 246

Query: 263 IVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKD 302
           +++VV G  + Q R  +  +L+T    F E +T   + T   +
Sbjct: 247 LISVVFGTDSEQARAAETQKLLTYGFRFFETRTFYQKGTELAE 289


>gi|15599194|ref|NP_252688.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa PAO1]
 gi|116052037|ref|YP_789120.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218889720|ref|YP_002438584.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa LESB58]
 gi|254236891|ref|ZP_04930214.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa C3719]
 gi|254242683|ref|ZP_04936005.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa 2192]
 gi|296387449|ref|ZP_06876948.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas aeruginosa PAb1]
 gi|313109439|ref|ZP_07795399.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa 39016]
 gi|4887207|gb|AAD32234.1|AF147448_5 penicillin-binding protein 5 [Pseudomonas aeruginosa PAO1]
 gi|9950191|gb|AAG07386.1|AE004817_10 D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa PAO1]
 gi|115587258|gb|ABJ13273.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168822|gb|EAZ54333.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa C3719]
 gi|126196061|gb|EAZ60124.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa 2192]
 gi|218769943|emb|CAW25704.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa LESB58]
 gi|310881901|gb|EFQ40495.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa 39016]
          Length = 386

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 81/285 (28%), Positives = 150/285 (52%), Gaps = 13/285 (4%)

Query: 27  NIQLMGKILFLSIIMISMASE------LHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRY 76
           NI  + K L L ++ I+  +       + A P+ ++   +++D    Q+      D+   
Sbjct: 2   NITTIAKRLSLLVLFIAPTAGWAAESMVPAPPQLAAKSYVLMDGESGQVLVENNGDQRLP 61

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT YI  + +++ ++  N  + VS+ A     S++++K  +  +    +  +I
Sbjct: 62  PASLTKLMTAYIATKEIEAGRIGENDLVTVSEHAWRTGGSRMFIKVGSQVSVSDLLHGII 121

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E I+GSE  FA +M+  A+K+G+ N+ + +A+GL + +  ++ARD A+
Sbjct: 122 IQSGNDASVALAEHIAGSEDAFADMMNTTAQKLGLTNSHFMDATGLPNPDHYSSARDMAV 181

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   +    P +Y  ++ ++F + N    N N LL +   +DG+KTG+T  +G+ +V S 
Sbjct: 182 LARAIIYGEPSHYAIYAQKEFLWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCLVASA 241

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQT 298
                 ++AVV G  + Q R  +  +L+T    F E +    + T
Sbjct: 242 VRDGQRMIAVVFGTNSEQARAAETQKLLTYGFRFFESRNFYKKGT 286


>gi|254427252|ref|ZP_05040959.1| D-alanyl-D-alanine carboxypeptidase family [Alcanivorax sp. DG881]
 gi|196193421|gb|EDX88380.1| D-alanyl-D-alanine carboxypeptidase family [Alcanivorax sp. DG881]
          Length = 386

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 86/274 (31%), Positives = 144/274 (52%), Gaps = 5/274 (1%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLH 99
           M+  A ++ AK     +++D    Q+      E R  PASLTKMMT YI+ E LQ   + 
Sbjct: 29  MVPRAPQIEAK---GYLLMDAASGQVIVEHNAEQRLPPASLTKMMTAYIVEEELQKGNIS 85

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
                P+S  A     S+++++E T       +  +I +S ND S A  E+I+GSE  FA
Sbjct: 86  EKDMAPISVQAWQMGGSRMFVREGTRVPVGDLLRGIIIQSGNDASVAMAEYIAGSEDAFA 145

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            LM+  A ++GM ++ + NA+G   +N  TTA+D AIL   + ++FP +Y  ++ ++F Y
Sbjct: 146 DLMNQHANRLGMDSSHFMNATGWPAENHFTTAKDMAILARAIVRDFPDHYDLYAKKEFTY 205

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
                 N N LL +   +DG+KTG+T  +G+ +V+S +  +  ++AVVMG  +   R ++
Sbjct: 206 NGITQQNRNLLLWRDPTVDGLKTGHTDEAGYCLVSSAKKDNMRLIAVVMGTASESARARE 265

Query: 280 ALELITSFLE-KKTLKHQQTHRKDNLSSTSLKKS 312
           + +L+T      +T K        +     + K 
Sbjct: 266 SQKLLTYGFRFFETYKAYSAGDVLDTVDVWMGKQ 299


>gi|328543443|ref|YP_004303552.1| D-alanyl-D-alanine carboxypeptidase family [polymorphum gilvum
           SL003B-26A1]
 gi|326413187|gb|ADZ70250.1| D-alanyl-D-alanine carboxypeptidase family [Polymorphum gilvum
           SL003B-26A1]
          Length = 486

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 122/263 (46%), Positives = 164/263 (62%), Gaps = 1/263 (0%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYII 89
           + K L L  +  S+ S   A  KY+ IV+D    +       DEPRYPASLTK+MTLY++
Sbjct: 13  IAKALLLIGLFASLPSIAQANAKYAGIVVDAKTGKTLYAASADEPRYPASLTKIMTLYVV 72

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           FE L++++L L+T + VS  AA Q PSK+ LK  +  + +  ILALIT+SANDV+    E
Sbjct: 73  FEELEARRLSLDTPLKVSAYAAGQPPSKIGLKPGSTISVKDAILALITKSANDVAVVVAE 132

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            I GSE +FA  M+  A++IGM  T ++N  GL +  Q TTARD A LG  +++ FP YY
Sbjct: 133 NIGGSEARFAERMTRTARQIGMTRTTFRNPHGLPNSGQRTTARDMAQLGRAIQERFPSYY 192

Query: 210 KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            YF  R F YR R   NHNKLL  +  +DGIKTG+ R SGFN+VTS+      +VAVVMG
Sbjct: 193 GYFKTRSFAYRGRTYGNHNKLLGHVAGVDGIKTGFIRASGFNLVTSVNRDGRHVVAVVMG 252

Query: 270 MPTSQERDQKALELITSFLEKKT 292
             T + RD + ++LI   L K +
Sbjct: 253 GQTGRSRDAQMVKLINEHLPKAS 275


>gi|107103514|ref|ZP_01367432.1| hypothetical protein PaerPA_01004584 [Pseudomonas aeruginosa PACS2]
          Length = 359

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 78/262 (29%), Positives = 140/262 (53%), Gaps = 7/262 (2%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           M+    +L AK   S +++D    Q+      D+   PASLTK+MT YI  + +++ ++ 
Sbjct: 1   MVPAPPQLAAK---SYVLMDGESGQVLVENNGDQRLPPASLTKLMTAYIATKEIEAGRIG 57

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            N  + VS+ A     S++++K  +  +    +  +I +S ND S A  E I+GSE  FA
Sbjct: 58  ENDLVTVSEHAWRTGGSRMFIKVGSQVSVSDLLHGIIIQSGNDASVALAEHIAGSEDAFA 117

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+  A+K+G+ N+ + +A+GL + +  ++ARD A+L   +    P +Y  ++ ++F +
Sbjct: 118 DMMNTTAQKLGLTNSHFMDATGLPNPDHYSSARDMAVLARAIIYGEPSHYAIYAQKEFLW 177

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            N    N N LL +   +DG+KTG+T  +G+ +V S       ++AVV G  + Q R  +
Sbjct: 178 NNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCLVASAVRDGQRMIAVVFGTNSEQARAAE 237

Query: 280 ALELIT---SFLEKKTLKHQQT 298
             +L+T    F E +    + T
Sbjct: 238 TQKLLTYGFRFFESRNFYKKGT 259


>gi|152984820|ref|YP_001346496.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa PA7]
 gi|150959978|gb|ABR82003.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa PA7]
          Length = 386

 Score =  314 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 81/285 (28%), Positives = 150/285 (52%), Gaps = 13/285 (4%)

Query: 27  NIQLMGKILFLSIIMISMASE------LHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRY 76
           NI  + K L L ++ I+  +       + A P+ ++   +++D    Q+      D+   
Sbjct: 2   NITTIAKRLSLLVLFIAPTAGWAAESMVPAPPQLAAKSYVLMDGESGQVLVENNGDQRLP 61

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT YI  + +++ ++  N  + VS+ A     S++++K  +  +    +  +I
Sbjct: 62  PASLTKLMTAYIATKEIEAGRIGENDLVTVSEHAWRTGGSRMFIKVGSQVSVSDLLHGII 121

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E I+GSE  FA +M+  A+K+G+ N+ + +A+GL + +  ++ARD A+
Sbjct: 122 IQSGNDASVALAEHIAGSEDAFADMMNTTAQKLGLTNSHFMDATGLPNPDHYSSARDMAV 181

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   +    P +Y  ++ ++F + N    N N LL +   +DG+KTG+T  +G+ +V S 
Sbjct: 182 LARAIIYGEPSHYAIYAQKEFLWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCLVASA 241

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQT 298
                 ++AVV G  + Q R  +  +L+T    F E +    + T
Sbjct: 242 VRDGQRMIAVVFGTNSEQARAAETQKLLTYGFRFFESRNFYKKGT 286


>gi|120555321|ref|YP_959672.1| Serine-type D-Ala-D-Ala carboxypeptidase [Marinobacter aquaeolei
           VT8]
 gi|120325170|gb|ABM19485.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Marinobacter aquaeolei VT8]
          Length = 391

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 79/271 (29%), Positives = 150/271 (55%), Gaps = 4/271 (1%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           + R + L+  +L +S    + A  + + P+    S +++D    ++      +E   PAS
Sbjct: 10  VTRTLFLVFSLLLMSGQASAQAVLIPSPPQIAGSSWVLMDPLSGRVIMEHNSNERLPPAS 69

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LTKMMT YI+   L   ++ ++  +P+S  A     S+ +++E T  + E  +  +I +S
Sbjct: 70  LTKMMTAYIVERELDEGRISMSDMVPISVKAWRTEGSRTFVQEGTSVSVEDLLKGVIIQS 129

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND S A  EF++GSE  F  +M+ +A+ +GM++T ++NA+GL   +  +TA D A+L  
Sbjct: 130 GNDASVALAEFVAGSEGAFVDIMNQQAQLLGMKDTHFENATGLPSADHFSTAYDLAVLAR 189

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            + +++P+ Y  ++ + F Y N    N N LL +  ++DG+KTG+T  +G+ +V S +  
Sbjct: 190 HIIQDYPENYPLYAQKHFTYNNIRQPNRNSLLWRDDSVDGLKTGHTEEAGYCLVASAKRG 249

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +  ++A VMG  +S+ R Q+  +++      
Sbjct: 250 ETRLIATVMGTSSSEARAQEVQKMLNYGFRY 280


>gi|312963236|ref|ZP_07777720.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas fluorescens WH6]
 gi|311282502|gb|EFQ61099.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas fluorescens WH6]
          Length = 385

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 79/306 (25%), Positives = 142/306 (46%), Gaps = 8/306 (2%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
            +R   L+  I+  +   + M          + +++D     +      D+   PASLTK
Sbjct: 7   AKRTCLLLSLIITPAAWAVEMVPASPQLAAKAWVLMDAASGNVLVENNGDQRLPPASLTK 66

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT YI    ++  ++  N  + VS+ A     S++++K  +  T    +  +I +S ND
Sbjct: 67  LMTAYIATLEIRRGQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 126

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            S A  E I+GSE  FA +M+     +GM N+ + N +GL +    ++A D AIL   + 
Sbjct: 127 ASVALAEHIAGSEDAFADMMNKTVADLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAII 186

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           +  P +Y  +S ++F + N    N N LL +   +DG+KTG+T  +G+ +V+S       
Sbjct: 187 RVDPVHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTEEAGYCMVSSAVRDGQR 246

Query: 263 IVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
           ++AVV G  + Q R  +  +L+T    F E +T       +   L++  + K    +   
Sbjct: 247 LIAVVFGTNSEQARAAETQKLLTYGFRFFETQTFY----QKGAELATAPVWKGATSQVKA 302

Query: 320 RTYSQF 325
                 
Sbjct: 303 GLAEDL 308


>gi|157146509|ref|YP_001453828.1| D-alanyl-D-alanine carboxypeptidase fraction C [Citrobacter koseri
           ATCC BAA-895]
 gi|157083714|gb|ABV13392.1| hypothetical protein CKO_02270 [Citrobacter koseri ATCC BAA-895]
          Length = 413

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 82/274 (29%), Positives = 141/274 (51%), Gaps = 11/274 (4%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLT 81
           R++     +LFL    +  A +  A P     + I++D +  ++      DE   PASLT
Sbjct: 22  RSLAAGSALLFLFAPTLQAAEQTTAPPSVDARAWILMDYSSGKVLAEGNADEKLDPASLT 81

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILAL 135
           K+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +       +
Sbjct: 82  KIMTSYVVGQALKAGKIQLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVSDLNKGV 141

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL    Q +TARD A
Sbjct: 142 IIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMA 201

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVT 254
           +LG  L  + P+ Y     ++F +      N N+LL   + N+DG+KTG T  +G+N+V 
Sbjct: 202 LLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVA 261

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 262 SATQGDMRLISVVLGTKTDRIRFNESEKLLTWGF 295


>gi|146308809|ref|YP_001189274.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas mendocina
           ymp]
 gi|145577010|gb|ABP86542.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Pseudomonas mendocina ymp]
          Length = 386

 Score =  312 bits (799), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 77/277 (27%), Positives = 138/277 (49%), Gaps = 11/277 (3%)

Query: 33  KILFLSIIMISMASE----LHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
             LFL ++   +A      + A P+ ++   +++D    Q+      D+   PASLTK+M
Sbjct: 10  AFLFLGLLTAPLAWSSQQVVPAPPQLAATSYVLMDAASGQVLVESNGDQRLPPASLTKLM 69

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T YI    +   ++  +  + VS+ A  +  SK++++     + +  +  +I +S ND S
Sbjct: 70  TAYIATLEINRGQIKESDMVRVSEKAWRKGGSKMFIEVGKEVSVDDLLHGIIIQSGNDAS 129

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  E I+GSE  FA +M+  A+++GM NT + N++G  D    ++A D A L   +   
Sbjct: 130 IAIAEHIAGSEDAFADMMNTHAQRLGMSNTHFMNSTGWPDPEHYSSAHDMAKLARAIIYE 189

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
            P +Y  +  ++F +      N N LL +   +DG+KTG+T  +G+ +V S       ++
Sbjct: 190 DPAHYDIYKQKEFLWNGIKQPNRNLLLWRDSTVDGLKTGHTEEAGYCLVASAVRDGQRLI 249

Query: 265 AVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQT 298
           A V G  + Q R  +  +L+T    F E +T   + T
Sbjct: 250 AAVFGTVSEQARAAEVQKLLTYGFRFFESRTFYKKGT 286


>gi|114330774|ref|YP_746996.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrosomonas eutropha
           C91]
 gi|114307788|gb|ABI59031.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Nitrosomonas eutropha C91]
          Length = 380

 Score =  312 bits (799), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 80/273 (29%), Positives = 147/273 (53%), Gaps = 6/273 (2%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSI-----VIDVNKNQMTGFKQDEPRY-P 77
           ++  + LM + +    +++ +      +P+ S       + D +  Q         R  P
Sbjct: 1   MKLLLTLMKQFILFLFLLMPVFPAWSQQPELSIAAKSFTLTDFHSGQTLASSNPHERLDP 60

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT Y++F  L+ +++ L+  +PVSK A     S+++++     T ++ I  +I 
Sbjct: 61  ASLTKLMTAYVVFSALKQERIKLDQVVPVSKKAWRMAGSRMFIEPNKPVTVDELIHGVIV 120

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND   A  E I+GSE     +M+ +AK++GM NT + N++GL   +  +TA D A+L
Sbjct: 121 QSGNDACVALAELIAGSEDLLVHMMNEEAKRLGMHNTHFTNSTGLTHPDHYSTANDLALL 180

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              + ++FP+YY  +S+R++ Y      N N+LL    N+DG+KTG+T  +G+ +VTS +
Sbjct: 181 AGAIIRDFPEYYPLYSLREYTYNGITQQNRNRLLWTDPNVDGMKTGWTEAAGYCLVTSAK 240

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                +++VVMG  +   R  ++  L+    + 
Sbjct: 241 RDHRRLISVVMGTASPNARSIESQRLLNYGFQF 273


>gi|70732753|ref|YP_262516.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas fluorescens Pf-5]
 gi|68347052|gb|AAY94658.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas fluorescens Pf-5]
          Length = 385

 Score =  311 bits (798), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 77/280 (27%), Positives = 137/280 (48%), Gaps = 4/280 (1%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLT 81
           + +R   L+  I+  +   +            S +++D +   +      D+   PASLT
Sbjct: 6   FAKRLCLLVPLIITPAAWAVEAMPSPPQLAAKSYVLMDASSGNVLVENNGDQRLPPASLT 65

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT YI    ++  ++  N  + VS+ A     S++++K  +  T    +  +I +S N
Sbjct: 66  KLMTAYIATLEIRRGQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGN 125

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D S A  E I+GSE  FA +M+  A  +GM N+ + N +GL +    ++A D A+L   +
Sbjct: 126 DASVAVSEHIAGSEDAFADMMNKTATDLGMSNSHFMNPTGLPNPEHYSSAHDMAVLARAI 185

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
               P +Y  +S ++F +      N N LL +   +DG+KTG+T  +G+ +V+S      
Sbjct: 186 IHEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGM 245

Query: 262 PIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQT 298
            ++AVV G  + Q R  +  +L+T    F E +T   + T
Sbjct: 246 RLIAVVFGTNSEQARAAETQKLLTYGFRFFETQTFYQKGT 285


>gi|326794762|ref|YP_004312582.1| beta-lactamase [Marinomonas mediterranea MMB-1]
 gi|326545526|gb|ADZ90746.1| Beta-lactamase [Marinomonas mediterranea MMB-1]
          Length = 382

 Score =  311 bits (798), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 78/277 (28%), Positives = 143/277 (51%), Gaps = 5/277 (1%)

Query: 24  IQRNIQLMGKILFLSIIMISMASE-LHAKPKYSS---IVIDVNKNQMTGFKQDEP-RYPA 78
           ++R I ++     L  I ++ A   + A P+ S+   I++D    ++   +       PA
Sbjct: 1   MKRLIGILLVFTSLFSIEVNAAPSLIPAPPQLSASSYILMDAYTGEVLVEQNSHKELPPA 60

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           SLTK+MT YI    +    +  + Q+ VS+ A     S+++++E T    E  +  +I +
Sbjct: 61  SLTKLMTAYIADYEIARGNISYDDQVRVSEAAWRMKGSRMFIREGTRVKLEDLMRGIIIQ 120

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND S A  E I+G+E  F  LM+  A+ +GM+NT ++N++G   +N  ++A D A+L 
Sbjct: 121 SGNDASVAVAEHIAGAEGAFVDLMNQHAQLLGMKNTHFQNSTGFPAENHYSSAYDIALLS 180

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
                 FP+ YK ++ + F Y +    N NKLL +   +DG+KTG+T+ +G+ +  S   
Sbjct: 181 RAKILQFPESYKMYAEKYFTYNDIRQPNRNKLLWRDKTVDGLKTGHTQAAGYCLAASAVR 240

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKH 295
               +++VVMG  + + R  ++ +L+         + 
Sbjct: 241 NGTRLISVVMGTSSDEARATESQKLMNYGFRYYETRK 277


>gi|110834820|ref|YP_693679.1| D-alanyl-D-alanine-carboxypeptidase [Alcanivorax borkumensis SK2]
 gi|110647931|emb|CAL17407.1| D-alanyl-D-alanine-carboxypeptidase [Alcanivorax borkumensis SK2]
          Length = 386

 Score =  311 bits (798), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 83/255 (32%), Positives = 138/255 (54%), Gaps = 4/255 (1%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
           L     M+  A ++ AK     +++D    Q+   +  D+   PASLTKMMT YI    L
Sbjct: 23  LLAQAQMVPRAPQIDAK---GYLLMDATSGQIIVERNADQRLPPASLTKMMTAYIAEAEL 79

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           Q   +      P+S  A     S+++++E T       +  +I +S ND S A  E+I+G
Sbjct: 80  QKGNISEKDMAPISVQAWQMGGSRMFVREGTRVPVGDLLRGIIIQSGNDASVAMAEYIAG 139

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           SE  FA LM+  A ++GM N+ + NA+G   +N  TTA+D AIL   + ++FP +Y  ++
Sbjct: 140 SEDAFADLMNQHANRLGMDNSHFMNATGWPAENHFTTAKDMAILARAIVRDFPDHYDLYA 199

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            ++F Y      N N LL +  ++DG+KTG+T  +G+ +V+S +     ++AVVMG  + 
Sbjct: 200 KKEFTYNGITQQNRNLLLWRDPSVDGLKTGHTDEAGYCLVSSAKKDGMRLIAVVMGTDSE 259

Query: 274 QERDQKALELITSFL 288
             R +++ +L+T   
Sbjct: 260 GARARESQKLLTYGF 274


>gi|288942562|ref|YP_003444802.1| beta-lactamase [Allochromatium vinosum DSM 180]
 gi|288897934|gb|ADC63770.1| Beta-lactamase [Allochromatium vinosum DSM 180]
          Length = 380

 Score =  311 bits (798), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 87/251 (34%), Positives = 140/251 (55%), Gaps = 4/251 (1%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
                EL AK     +++D +  +       DE   PASLTK+MT Y +F  L S+++ L
Sbjct: 28  TPAPPELEAK---GYLLVDFHTGKTLAELNADERLEPASLTKIMTAYTVFRELASERIKL 84

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
             Q+ VS+ A     SK++++   + + E  +  +I +S ND S A  E++SG+ + FA 
Sbjct: 85  TDQVLVSEKAWRTGGSKMFIEVGKHVSLEDLLKGMIIQSGNDASVALAEYVSGNVESFAN 144

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
           LM+  AK++GM N+ + N +GL D    TTARD A + + L + FP+YY ++S ++F Y 
Sbjct: 145 LMNAHAKRLGMTNSHFTNPNGLPDPELYTTARDMARVAVALIREFPEYYAWYSNQEFTYN 204

Query: 221 NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
                N N LL +    DGIKTGYT+ +G+ +V S +  D  +++VVMG P+ + R + +
Sbjct: 205 GITQANRNPLLKRDPTADGIKTGYTKAAGYCLVGSAKRDDMRLISVVMGTPSPRARAEAS 264

Query: 281 LELITSFLEKK 291
           L L+       
Sbjct: 265 LALLNYGFRTY 275


>gi|53802656|ref|YP_112644.1| D-alanyl-D-alanine carboxypeptidase [Methylococcus capsulatus str.
           Bath]
 gi|53756417|gb|AAU90708.1| D-alanyl-D-alanine carboxypeptidase [Methylococcus capsulatus str.
           Bath]
          Length = 392

 Score =  311 bits (797), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 87/260 (33%), Positives = 140/260 (53%), Gaps = 7/260 (2%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           +I    EL AK   + ++ D    ++   +  DE   PASLTK+MT YI+F  L    + 
Sbjct: 34  LIPAPPELPAK---AYLLQDFYSGRVLAERNADERLEPASLTKVMTAYILFRELAQGHVK 90

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           L   + VS+ A     S+++ +     + E  +  +I +S ND S A  E ++G E  FA
Sbjct: 91  LEDMVTVSEKAWRTEGSRMFAQVGAQISVENLLKGMIVQSGNDASVALAEHVAGDEAVFA 150

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            LM+  A+++GM NT +KN+ GL D +  TTARD A L   + K FPQYY + +I++F +
Sbjct: 151 QLMNQNAERLGMTNTHFKNSMGLPDPDHYTTARDLATLTRAMIKEFPQYYPWHAIKEFVF 210

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            +    N N+LL +  ++DG+KTG+T  +G+ ++TS     D +V+VV+G  +  +R   
Sbjct: 211 NDIKQVNRNRLLWRDPSVDGVKTGHTEGAGYCLITSAVRDGDRMVSVVLGTKSDTDRANA 270

Query: 280 ALELIT---SFLEKKTLKHQ 296
              L+     F E K +   
Sbjct: 271 NQALLNYGFRFFETKPVHKG 290


>gi|148549880|ref|YP_001269982.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida F1]
 gi|148513938|gb|ABQ80798.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida F1]
          Length = 403

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 82/295 (27%), Positives = 142/295 (48%), Gaps = 13/295 (4%)

Query: 17  YPYGSIYIQRNIQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMT 67
            P      + NI  + K L L ++++   +   A+            S +++D +   + 
Sbjct: 9   RPLAIFERRMNITNLAKRLCLPVLLLITPAAFAAEQMTPAPPQLAAKSYVLMDASSGNVL 68

Query: 68  GFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYF 126
                DE   PASLTK+MT YI    ++  ++  +  + VS+ A     S++++K  +  
Sbjct: 69  VENNGDERLPPASLTKLMTAYIATLDIRRGQIGESDPVTVSENAWRTGGSRMFIKVGSQV 128

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           T    +  +I +S ND S A  E I+GSE  FA +M+  A  +GM N+ + N +GL +  
Sbjct: 129 TVSDLLHGIIIQSGNDASVALAEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPNPE 188

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
             ++A D A L   +    P +Y  +S ++F + N    N N LL +   +DG+KTG+T 
Sbjct: 189 HYSSAHDMATLARAIINVDPAHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTD 248

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQT 298
            +G+ +V S       ++AVV G  + Q R  +  +L+T    F E +T   + T
Sbjct: 249 EAGYCMVASAVRDGQRLIAVVFGTNSEQSRAAETQKLLTYGFRFFETQTFYQKGT 303


>gi|295690183|ref|YP_003593876.1| serine-type D-Ala-D-Ala carboxypeptidase [Caulobacter segnis ATCC
           21756]
 gi|295432086|gb|ADG11258.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caulobacter segnis ATCC
           21756]
          Length = 433

 Score =  311 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 112/312 (35%), Positives = 182/312 (58%), Gaps = 11/312 (3%)

Query: 18  PYGSIYIQRNIQLMGKILFLSIIMISMASELH------AKPKYSSIVIDVNKNQMTGFK- 70
              S+ +   + L G  LF ++     ++ +       ++PKY++IVID N  ++   K 
Sbjct: 7   SARSVLVAAGLALAG--LFGALAPTPASAAIPYLQLNASEPKYAAIVIDANSGEVLYDKR 64

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
            D PRYPAS+TK+MTLY+ FE L   ++ L  ++ +S  AA Q P+K+ L+     + ++
Sbjct: 65  ADSPRYPASVTKVMTLYLTFEALSEGRMKLTDRVVMSPRAAAQAPTKIGLRPGDSMSVDE 124

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            I A+  +SANDV+ A  E ++GSE +FA LM+ + +++GM+N+ + NASGL D  QI+T
Sbjct: 125 AIKAMTVKSANDVAVAMAERLAGSESRFAALMTLRGQELGMRNSRFVNASGLPDSRQIST 184

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           ARD AIL   + ++FPQYY YFSIR F +R   +  HN+LL+ M   DG+KTGYT  SGF
Sbjct: 185 ARDLAILSRAIMRDFPQYYSYFSIRGFTFRGNYVKGHNRLLDSMEGFDGLKTGYTNASGF 244

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE--KKTLKHQQTHRKDNLSSTS 308
           N+  S       ++AVV+G P++  RD    +L+ +  +  K+  + ++T    N+    
Sbjct: 245 NLAGSAVRDGRRLIAVVLGGPSTAWRDNNMEDLLLTGFDVMKRRSRGERTTIAANIYEDD 304

Query: 309 LKKSLMIKKLKR 320
               +    +++
Sbjct: 305 PSGPIQRPSVEQ 316


>gi|238893899|ref|YP_002918633.1| D-alanyl-D-alanine carboxypeptidase fraction C [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238546215|dbj|BAH62566.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 428

 Score =  311 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 83/290 (28%), Positives = 143/290 (49%), Gaps = 11/290 (3%)

Query: 10  AKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQM 66
            K T++       +  R +     +LFL    +  A +L   P     + I++D    ++
Sbjct: 21  GKDTWVALMMHDAFSLRGLAAGCALLFLVAPAVQAAEQLPDAPSINARAWILMDYASGKV 80

Query: 67  TGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLY 119
                 DE   PASLTK+MT Y++ + +++ K+ L   + V + A        +  S ++
Sbjct: 81  LSEGNADEKLDPASLTKIMTSYVVGQAIKAGKIKLTDMVTVGRDAWATGNPALRGSSVMF 140

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           LK     + E     +I +S ND S A  ++++GS+  F  LM+  AKK+G+ NT +   
Sbjct: 141 LKPGMQVSVEDLNKGVIIQSGNDASIAIADYVAGSQDAFVSLMNGYAKKMGLTNTTFMTV 200

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NID 238
            GL    Q +TARD A+L   +  + P+ Y     ++F +      N N+LL   + N D
Sbjct: 201 HGLDAPGQFSTARDMALLTKAMIHDVPEEYAVHKEKEFTFNKIRQPNRNRLLWSSNLNAD 260

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           G+KTG T  +G+N+V+S    D  ++AVV+G  T + R  ++ +L+T   
Sbjct: 261 GVKTGTTAGAGYNLVSSATQGDMRLIAVVLGTKTDRIRFNESEKLLTWGF 310


>gi|229592798|ref|YP_002874917.1| putative cell division-like protein [Pseudomonas fluorescens SBW25]
 gi|229364664|emb|CAY52594.1| putative cell division-related protein [Pseudomonas fluorescens
           SBW25]
          Length = 385

 Score =  311 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 80/306 (26%), Positives = 142/306 (46%), Gaps = 8/306 (2%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
            +R   L+  I+  +   + M          S +++D     +      D+   PASLTK
Sbjct: 7   AKRTCLLISLIITPAAWAVEMVPASPQLAAKSWVLMDAASGNVLVESNGDQRLPPASLTK 66

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT YI    ++  ++  N  + VS+ A     S++++K  +  T    +  +I +S ND
Sbjct: 67  LMTAYIATLEIRRGQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 126

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            S A  E I+GSE  FA +M+     +GM N+ + N +GL +    ++A D AIL   + 
Sbjct: 127 ASVALAEHIAGSEDAFADMMNKTVADLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAII 186

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           +  P +Y  +S ++F + N    N N LL +   +DG+KTG+T  +G+ +V+S       
Sbjct: 187 RVDPVHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGQR 246

Query: 263 IVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
           ++AVV G  + Q R  +  +L+T    F E +T       +   L++  + K    +   
Sbjct: 247 LIAVVFGTNSEQARAAETQKLLTYGFRFFETQTFY----QKGAELATAPVWKGATSQVKA 302

Query: 320 RTYSQF 325
                 
Sbjct: 303 GLAEDL 308


>gi|104783763|ref|YP_610261.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           [Pseudomonas entomophila L48]
 gi|95112750|emb|CAK17478.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           (precursor) [Pseudomonas entomophila L48]
          Length = 386

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 84/285 (29%), Positives = 147/285 (51%), Gaps = 13/285 (4%)

Query: 27  NIQLMGKILFLSIIMI----SMASE--LHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRY 76
           NI  + K L L ++++    + A+E  + A P+ ++   +++D +   +      DE   
Sbjct: 2   NITNLAKRLCLPVLLLITPAAFAAEQMMPAPPQLAAKSYVLMDASSGNVLVENNGDERLP 61

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT YI    ++  ++  N  + VS+ A     S++++K  +  T    +  +I
Sbjct: 62  PASLTKLMTAYIATLDIRRGQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGII 121

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E I+GSE  FA +M+  A  +GM N+ + N +GL +    ++A D A+
Sbjct: 122 IQSGNDASVALSEHIAGSEDAFADMMNKTAGDLGMANSHFMNPTGLPNPEHYSSAHDMAL 181

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   +    P +Y  +S ++F + N    N N LL +   +DG+KTG+T  +G+ +V S 
Sbjct: 182 LARAIINEDPAHYAIYSQKEFYWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVASA 241

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQT 298
                 ++AVV G  + Q R  +  +L+T    F E +T   + T
Sbjct: 242 VRDGQRLIAVVFGTNSEQSRAAETQKLLTYGFRFFETQTFYQKGT 286


>gi|217968699|ref|YP_002353933.1| beta-lactamase [Thauera sp. MZ1T]
 gi|217506026|gb|ACK53037.1| Beta-lactamase [Thauera sp. MZ1T]
          Length = 375

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 90/311 (28%), Positives = 157/311 (50%), Gaps = 12/311 (3%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
             +   +   S+  ++      A    +  ++D    Q    K  D    PASLTK+MT 
Sbjct: 3   FLIAVLVSLFSLSALAQTVPPPALAAKAWALVDHATGQTLAEKDADARIEPASLTKLMTA 62

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           YI F  L+   L  +  +PVS  A     S+++++     + ++ I  +I +S ND   A
Sbjct: 63  YITFSKLKEGSLKPDQVVPVSTKAWRMEGSRMFIEPNKPVSVDELIRGVIVQSGNDACVA 122

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E I+GSE+ FA LM+ +A+++GM NT + N++GL D    T+ARD A+L   + ++FP
Sbjct: 123 LAETIAGSEEAFAALMNREAQRLGMTNTHFTNSTGLPDPQLYTSARDLAVLASAIVRDFP 182

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           +YY  +S+++F Y      N N+LL    ++DG+KTG+T ++G+ +V++ R  +  +V+V
Sbjct: 183 EYYGLYSLKEFTYNGIKQPNRNRLLYMDPSVDGMKTGHTSSAGYCLVSTARRGERRLVSV 242

Query: 267 VMGMPTSQERDQKALELIT---SFLEKKTL--------KHQQTHRKDNLSSTSLKKSLMI 315
           V+G  +   R Q++L+L+     F E   L        K +    K N       K   +
Sbjct: 243 VLGAASDSVRAQESLKLLNFGYQFYETVKLYSADEALSKFRVWKGKLNELPVGFTKDFAL 302

Query: 316 KKLKRTYSQFK 326
              K   ++ +
Sbjct: 303 TVPKEAANKIQ 313


>gi|121997803|ref|YP_001002590.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halorhodospira halophila
           SL1]
 gi|121589208|gb|ABM61788.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Halorhodospira halophila SL1]
          Length = 392

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 91/322 (28%), Positives = 166/322 (51%), Gaps = 26/322 (8%)

Query: 30  LMGKILFLSIIMISMASE-----------LHAKPKYSS---IVIDVNKNQMTGFKQDEP- 74
           L+  +L + +I ++MA E             + P   +   +++D++   +   +  E  
Sbjct: 10  LVPALLTVGLIPMAMADERWGTPIVESVPTPSPPSVGAPSHLLVDMHSGYILAHRDPEES 69

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
             PASL K+MT Y++FE L S  + L  ++ VS+ A   + S+++L+  T  T  + +  
Sbjct: 70  WEPASLAKIMTAYVVFEELASGHIGLEDKVTVSEKAWRSSGSRMFLEVGTEVTVAELLQG 129

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           LI +S ND + A  E ++G E+ FA +M+  A ++GM NT Y NA+G+  +   TTA+D 
Sbjct: 130 LIVQSGNDAAVALAEHVAGDEETFAQVMNQYASRLGMDNTHYTNATGMPHEQMRTTAQDT 189

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
           A L   +  +FP++Y ++S R F Y      N N+LL +   +DG+KTGYT ++G+N+VT
Sbjct: 190 ARLARAMIDDFPEFYDWYSQRSFEYAGINQHNRNRLLWRDETVDGLKTGYTSSAGYNLVT 249

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTL--------KHQQTHRKDN 303
           S       +++VV+G  +   R Q++L+L+     F E   L        + +    + +
Sbjct: 250 SAERGGMRLISVVLGTESEDARAQQSLQLLNYGFRFFETHRLYSAGEQLTEARAWMGEGD 309

Query: 304 LSSTSLKKSLMIKKLKRTYSQF 325
             +  +  +L +   ++ Y   
Sbjct: 310 SVALGIPDNLYVTIPRQEYDNL 331


>gi|254448546|ref|ZP_05062006.1| penicillin-binding protein 5 [gamma proteobacterium HTCC5015]
 gi|198261929|gb|EDY86214.1| penicillin-binding protein 5 [gamma proteobacterium HTCC5015]
          Length = 401

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 79/272 (29%), Positives = 143/272 (52%), Gaps = 7/272 (2%)

Query: 28  IQLMGKILF---LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           I L    LF      + I    +L+A    S I++D    ++      DE   PAS+TK+
Sbjct: 30  IALFATSLFSFQAVAVPIPSPPQLNAN---SWILMDFATGKVLSEHNADERIEPASITKI 86

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT Y++++ + S  + ++  +PVS+ A     S+++++       E  +  L+ +S ND 
Sbjct: 87  MTSYVVYQAIDSGLISMSDSVPVSEKAWRMKGSRMFIEVGKSVPLEALLKGLVIQSGNDA 146

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           + A  E++ G+E+ FA  M+  AK +GM  + + N++G    +  TTARD AIL   L +
Sbjct: 147 AVALAEYVGGTEEAFAEQMNAAAKALGMTGSHFVNSTGWPHADHYTTARDIAILSHALIR 206

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           ++P++Y+ ++ + + Y +    N N LL +  ++DGIKTG+T  +G+ +  S R  D  +
Sbjct: 207 DYPEHYRVYAEKNYTYNSIKQPNRNALLWRDSSVDGIKTGHTEAAGYCLAASARRDDMRL 266

Query: 264 VAVVMGMPTSQERDQKALELITSFLEKKTLKH 295
           ++VVMG  +S  R Q +  L+         + 
Sbjct: 267 ISVVMGTESSGARSQYSQTLLNYGFRYYETRK 298


>gi|82703112|ref|YP_412678.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrosospira multiformis
           ATCC 25196]
 gi|82411177|gb|ABB75286.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Nitrosospira multiformis ATCC 25196]
          Length = 404

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 84/249 (33%), Positives = 140/249 (56%), Gaps = 1/249 (0%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNT 102
              +  +    S I+ D+   Q+   K    R  PASLTK+MT Y++F  L  K++ L  
Sbjct: 50  APPQTLSVAAKSYILADLQSGQVLVSKNAHERVDPASLTKLMTAYVVFAALYQKRVTLTQ 109

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            +PVS  A     S+++++ K   T ++ +  +I +S ND S A  E +SGSE+ FA  M
Sbjct: 110 AVPVSTRAWRAQGSRMFIEPKKPVTVDELMRGMIVQSGNDASIALAEAVSGSEEAFAQAM 169

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
           + +A ++GM+NT + N++GL D +  TTA D A+L   + ++FP+YY  +S++++ Y   
Sbjct: 170 NKEAARMGMKNTRFANSTGLPDPDHYTTAYDLALLATAIIRDFPEYYPLYSLKEYTYNKI 229

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
              N N+LL    N+DG+KTG+T  +G+ ++TS R     +VAVVMG  +   R  ++  
Sbjct: 230 TQANRNRLLWLDPNVDGMKTGHTDAAGYCLITSARRGQRRLVAVVMGTASESARAMESQR 289

Query: 283 LITSFLEKK 291
           L+    +  
Sbjct: 290 LLNYGFQFY 298


>gi|311693499|gb|ADP96372.1| serine-type D-Ala-D-Ala carboxypeptidase [marine bacterium HP15]
          Length = 374

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 79/262 (30%), Positives = 143/262 (54%), Gaps = 4/262 (1%)

Query: 34  ILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYII 89
           +L L+   +S +  + + P+    S +++D    ++   +    R  PASLTKMMT YI+
Sbjct: 3   MLALTGKAMSQSVLIPSPPQIAGSSYVLMDPKSGRIIMEENSHERLPPASLTKMMTAYIV 62

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
              L   ++ ++  +P+S  A     S+ +++E T  + E  +  +I +S ND S A  E
Sbjct: 63  ERELDEGRIAMSDMVPISVNAWKTEGSRTFVREGTQVSVEDLLRGVIIQSGNDASVALAE 122

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
           F++GSE  F  +M+ +A+ +GM++T + NA+GL      +TA D A+L   +  ++P+ Y
Sbjct: 123 FVAGSEGAFVDIMNQQAQLLGMKDTNFVNATGLPSPEHFSTAYDLAMLARAIINDYPENY 182

Query: 210 KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
             ++ + F Y N    N N LL +  ++DG+KTG+T  +G+ +V S +  D   +AVVMG
Sbjct: 183 PLYAEKHFTYNNIRQPNRNSLLWRDDSVDGLKTGHTEEAGYCLVASAKRNDTRFIAVVMG 242

Query: 270 MPTSQERDQKALELITSFLEKK 291
             +S+ R Q+  +++       
Sbjct: 243 TNSSEARAQEIQKMLNYGFRYY 264


>gi|194735164|ref|YP_002113956.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195874051|ref|ZP_02700341.2| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197250312|ref|YP_002145817.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197300887|ref|ZP_02661864.2| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|198246085|ref|YP_002214828.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205357020|ref|ZP_02344188.2| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205358377|ref|ZP_02655826.2| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205359776|ref|ZP_02831975.2| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194710666|gb|ACF89887.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195630952|gb|EDX49538.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197214015|gb|ACH51412.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197290207|gb|EDY29564.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197940601|gb|ACH77934.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205324544|gb|EDZ12383.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205334736|gb|EDZ21500.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205343236|gb|EDZ30000.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
          Length = 426

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 80/274 (29%), Positives = 139/274 (50%), Gaps = 11/274 (4%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLT 81
           R++     +LFL    +    +  A P     + I++D    ++      DE   PASLT
Sbjct: 35  RSLAAGSVLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLT 94

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILAL 135
           K+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +       +
Sbjct: 95  KIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGI 154

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I +S ND   A  ++++GS++ F  LM+  AK++G+ NT ++   GL    Q +TARD A
Sbjct: 155 IIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMA 214

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVT 254
           +LG  L  + P  Y     ++F + N    N N+LL   + ++DG+KTG T  +G+N+V 
Sbjct: 215 LLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVA 274

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 275 SATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 308


>gi|163859128|ref|YP_001633426.1| secreted serine-type D-Ala-D-Ala carboxypeptidase [Bordetella
           petrii DSM 12804]
 gi|163262856|emb|CAP45159.1| secreted serine-type D-Ala-D-Ala carboxypeptidase [Bordetella
           petrii]
          Length = 414

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 80/252 (31%), Positives = 140/252 (55%), Gaps = 3/252 (1%)

Query: 42  ISMASELHAK--PKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKL 98
           ++  S + A      + I ID +  Q+      D    PASLTK+MT Y++F  L+ K++
Sbjct: 56  VAELSSVPAPTIAARAWITIDASSGQVLAAANPDMQIEPASLTKIMTAYVVFNALKEKRI 115

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            L  Q+PVS+ A     S+++++ +   T ++ I  +I +S ND S A  E + GSE  F
Sbjct: 116 TLEQQVPVSEHAWRTGGSRMFIEPRKPVTVDELIQGMIVQSGNDASVALAEAVGGSESAF 175

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           A LM+ +A+++G++ T + NA+GL D   +TT  D A+L   L  + P YY Y+  ++F 
Sbjct: 176 AALMNQEAERLGLKRTHFMNATGLPDPQHVTTVADLAVLSAALINDHPDYYHYYKQKEFT 235

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           Y      N N+LL    ++DG+KTG+T  +G+ +V++    D  ++ V+ G  +   R +
Sbjct: 236 YNKITQPNRNRLLWADPSVDGMKTGHTDAAGYCLVSTALRGDRRVLTVLAGADSEATRAE 295

Query: 279 KALELITSFLEK 290
           ++L+L+    + 
Sbjct: 296 ESLKLLNWSFQN 307


>gi|152996856|ref|YP_001341691.1| Serine-type D-Ala-D-Ala carboxypeptidase [Marinomonas sp. MWYL1]
 gi|150837780|gb|ABR71756.1| Serine-type D-Ala-D-Ala carboxypeptidase [Marinomonas sp. MWYL1]
          Length = 382

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 80/277 (28%), Positives = 140/277 (50%), Gaps = 5/277 (1%)

Query: 24  IQRNIQLMGKIL-FLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPA 78
           +++ +  +  +  F+S  + +  S +   P+ S+   I++D     +      D+   PA
Sbjct: 1   MKKLLATLSLVFCFVSGSVFAAPSLIPTPPQLSASSYILMDAYTGDILVEHNADQALPPA 60

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           SLTK+MT YII   L    L L+ ++ +S+ A     S+++++E T    E  +  +I +
Sbjct: 61  SLTKLMTAYIIEYELARGNLSLDDKVNISEKAWRMEGSRMFIREGTQVKLEDLMRGIIIQ 120

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND S A  E I+GSE  FA LM+  A+ +GM N+ + NA+G   ++  ++A D A L 
Sbjct: 121 SGNDASVAAAEHIAGSESAFADLMNQHAQLLGMTNSHFVNATGFPAEDHYSSAHDIAKLA 180

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
                 FP+ Y  ++ ++F Y N    N NKLL +   +DG+KTG+T  +GF +  S   
Sbjct: 181 RATILQFPENYSMYAEKEFTYNNIRQPNRNKLLWRDKTVDGMKTGHTEAAGFCLAASAVR 240

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKH 295
               ++ VVMG  +   R  ++ +L+         + 
Sbjct: 241 NGTRLITVVMGTKSDTARAIESQKLLDYGFRYYETRK 277


>gi|168240742|ref|ZP_02665674.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|194447475|ref|YP_002044893.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194405779|gb|ACF65998.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|205340371|gb|EDZ27135.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
          Length = 400

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 80/274 (29%), Positives = 140/274 (51%), Gaps = 11/274 (4%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLT 81
           R++     +LFL    +    +  A P     + I++D +  ++      DE   PASLT
Sbjct: 9   RSLAAGSVLLFLFASPVKAEEQTIAPPGVDARAWILMDYSSGKVLAEGNADEKLDPASLT 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILAL 135
           K+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +       +
Sbjct: 69  KIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGI 128

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I +S ND   A  ++++GS++ F  LM+  AK++G+ NT ++   GL    Q +TARD A
Sbjct: 129 IIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMA 188

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVT 254
           +LG  L  + P  Y     ++F + N    N N+LL   + ++DG+KTG T  +G+N+V 
Sbjct: 189 LLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVA 248

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 249 SATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 282


>gi|119896472|ref|YP_931685.1| D-alanyl-D-alanine carboxypeptidase [Azoarcus sp. BH72]
 gi|119668885|emb|CAL92798.1| probable D-alanyl-D-alanine carboxypeptidase [Azoarcus sp. BH72]
          Length = 376

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 80/246 (32%), Positives = 145/246 (58%), Gaps = 2/246 (0%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
              A    + +++D N  Q+      + R  PASLTK+MT Y+ F  L++  + L+  +P
Sbjct: 22  PAPALAAKAWVLVDHNTGQVLAANDPDARIEPASLTKLMTAYLTFSALKAGTIALDQPVP 81

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           VS+ A  Q  S+++++ +   T ++ I  +I +S ND   A  E I+G+E+ FA +M+ +
Sbjct: 82  VSERAWRQEGSRMFIEPQKPVTVQELIRGVIVQSGNDACVALAELIAGTEEAFAAMMNRE 141

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-KYFSIRKFRYRNRII 224
           A+++GM NT + N++GL D    TTA+D A+L   + ++FP YY   +S++++RY N   
Sbjct: 142 AQRLGMSNTHFTNSTGLPDPQLYTTAKDLALLASAIIRDFPDYYASLYSLKEYRYNNITQ 201

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            N N+LL     +DG+KTG+T ++G+ +++S       +V+VV+G  +   R Q++L+L+
Sbjct: 202 PNRNRLLWMDSTVDGMKTGHTSSAGYCLISSALRGPRRLVSVVLGAESDTVRAQESLKLL 261

Query: 285 TSFLEK 290
               + 
Sbjct: 262 NFGFQF 267


>gi|325276744|ref|ZP_08142459.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas sp. TJI-51]
 gi|324098127|gb|EGB96258.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas sp. TJI-51]
          Length = 386

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 82/285 (28%), Positives = 142/285 (49%), Gaps = 13/285 (4%)

Query: 27  NIQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQ-DEPRY 76
           NI  + K L L ++++   +   A+            S +++D +   +      DE   
Sbjct: 2   NITNLAKRLCLPVLLLITPAAFAAEQMTPAPPQLAAKSYVLMDASSGNVLVENNGDERLP 61

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT YI    ++  ++  N  + VS+ A     S++++K  +  T    +  +I
Sbjct: 62  PASLTKLMTAYIATLDIRRGQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGII 121

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E I+GSE  FA +M+  A  +GM N+ + N +GL + +  ++A D A+
Sbjct: 122 IQSGNDASVALSEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPNPDHYSSAHDMAV 181

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   +    P +Y  +S ++F + N    N N LL +   +DG+KTG+T  +G+ +V S 
Sbjct: 182 LARAIINVDPAHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTEEAGYCMVASA 241

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQT 298
                 ++AVV G  + Q R  +  +L+T    F E +T   + T
Sbjct: 242 VRDGQRLIAVVFGTNSEQARAAETQKLLTYGFRFFETQTFYQKGT 286


>gi|283784604|ref|YP_003364469.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase)
           [Citrobacter rodentium ICC168]
 gi|282948058|emb|CBG87622.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase)
           [Citrobacter rodentium ICC168]
          Length = 400

 Score =  309 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 83/274 (30%), Positives = 139/274 (50%), Gaps = 11/274 (4%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGF-KQDEPRYPASLT 81
           RNI     +LFL    +  A +  A P     + I++D    ++      DE   PASLT
Sbjct: 9   RNIAAGSALLFLFAPAVMAAEQTIAAPAVEARAWILMDYASGKVLAEGNADEKLDPASLT 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILAL 135
           K+MT Y++ + L++ K+ L   + + K A        +  S ++LK             +
Sbjct: 69  KIMTSYVVGQALKADKIKLTDMVTIGKDAWATGNPALRGSSVMFLKPGDRVAVADLNKGV 128

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL    Q +TARD A
Sbjct: 129 IIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFRTVHGLDAPGQYSTARDMA 188

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVT 254
           +LG  L  + P+ Y     ++F +      N N+LL   + N+DG+KTG T  +G+N+V 
Sbjct: 189 LLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNINVDGMKTGTTAGAGYNLVA 248

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 249 SATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 282


>gi|330887942|gb|EGH20603.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 401

 Score =  309 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 81/284 (28%), Positives = 141/284 (49%), Gaps = 11/284 (3%)

Query: 23  YIQRNIQLMGKILFLSII----MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           + +R   L+  I+  ++     M   A +L AK   S +++D     +      D+   P
Sbjct: 6   FAKRLCLLVALIITPTVWAAEQMTPAAPQLAAK---SYVLMDATSGNVLVENNGDQRLAP 62

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT YI    ++  ++  N  + +S+ A     S++++K  +  T    +  +I 
Sbjct: 63  ASLTKLMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIII 122

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E I+GSE  FA +M+  A  +GM N+ + N +GL +    ++A D AIL
Sbjct: 123 QSGNDASVAISEHIAGSEDAFADMMNKTAGDLGMTNSHFMNPTGLPNPEHYSSAHDMAIL 182

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              +    P +Y  +S ++F +      N N LL +   +DG+KTG+T  +G+ +V+S  
Sbjct: 183 ARAIIHEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAV 242

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQT 298
                ++AVV G  + Q R  +  +L+T    F E +    + T
Sbjct: 243 RDGMRLIAVVFGTNSEQARAAETQKLLTYGFRFFETQNFYQKGT 286


>gi|213428063|ref|ZP_03360813.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
          Length = 402

 Score =  309 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 80/274 (29%), Positives = 139/274 (50%), Gaps = 11/274 (4%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLT 81
           R++     +LFL    +    +  A P     + I++D    ++      DE   PASLT
Sbjct: 9   RSLAAGSVLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLT 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILAL 135
           K+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +       +
Sbjct: 69  KIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGI 128

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I +S ND   A  ++++GS++ F  LM+  AK++G+ NT ++   GL    Q +TARD A
Sbjct: 129 IIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMA 188

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVT 254
           +LG  L  + P  Y     ++F + N    N N+LL   + ++DG+KTG T  +G+N+V 
Sbjct: 189 LLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVA 248

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 249 SATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 282


>gi|238913835|ref|ZP_04657672.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 400

 Score =  309 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 80/274 (29%), Positives = 139/274 (50%), Gaps = 11/274 (4%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLT 81
           R++     +LFL    +    +  A P     + I++D    ++      DE   PASLT
Sbjct: 9   RSLAAGSVLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLT 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILAL 135
           K+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +       +
Sbjct: 69  KIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGI 128

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I +S ND   A  ++++GS++ F  LM+  AK++G+ NT ++   GL    Q +TARD A
Sbjct: 129 IIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMA 188

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVT 254
           +LG  L  + P  Y     ++F + N    N N+LL   + ++DG+KTG T  +G+N+V 
Sbjct: 189 LLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVA 248

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 249 SATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 282


>gi|66047588|ref|YP_237429.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas syringae pv.
           syringae B728a]
 gi|63258295|gb|AAY39391.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas syringae pv.
           syringae B728a]
          Length = 395

 Score =  309 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 81/284 (28%), Positives = 141/284 (49%), Gaps = 11/284 (3%)

Query: 23  YIQRNIQLMGKILFLSII----MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           + +R   L+  I+  ++     M   A +L AK   S +++D     +      D+   P
Sbjct: 15  FAKRLCLLVPLIITPTVWAAEQMTPAAPQLAAK---SYVLMDATSGNVLVENNGDQRLAP 71

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT YI    ++  ++  N  + +S+ A     S++++K  +  T    +  +I 
Sbjct: 72  ASLTKLMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIII 131

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E I+GSE  FA +M+  A  +GM N+ + N +GL +    ++A D AIL
Sbjct: 132 QSGNDASVAISEHIAGSEDAFADMMNKTAGDLGMTNSHFMNPTGLPNPEHYSSAHDMAIL 191

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              +    P +Y  +S ++F +      N N LL +   +DG+KTG+T  +G+ +V+S  
Sbjct: 192 ARAIIHEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAV 251

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQT 298
                ++AVV G  + Q R  +  +L+T    F E +    + T
Sbjct: 252 RDGMRLIAVVFGTNSEQARAAETQKLLTYGFRFFETQNFYQKGT 295


>gi|170719804|ref|YP_001747492.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida W619]
 gi|169757807|gb|ACA71123.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida W619]
          Length = 386

 Score =  308 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 84/285 (29%), Positives = 146/285 (51%), Gaps = 13/285 (4%)

Query: 27  NIQLMGKILFLSIIMI----SMASE--LHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRY 76
           NI  + K L L ++++    + A+E  + A P+ ++   +++D +   +      DE   
Sbjct: 2   NITNLAKRLCLPVLLMITPAAFAAEQMMPAPPQLAAKSYVLMDASSGNVLVENNGDERLP 61

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT YI    ++  ++  N  + VS+ A     S++++K  +  T    +  +I
Sbjct: 62  PASLTKLMTAYIATLDIRRGQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGII 121

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E I+GSE  FA +M+  A  +GM N+ + N +GL   +  ++A D A 
Sbjct: 122 IQSGNDASVALAEHIAGSEDAFADMMNKTAADLGMSNSHFMNPTGLPHPDHYSSAHDMAT 181

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   +    P +Y  +S ++F + N    N N LL +   +DG+KTG+T  +G+ +V S 
Sbjct: 182 LARAIINVDPAHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTEEAGYCMVASA 241

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQT 298
                 ++AVV G  + Q R  +  +L+T    F E +T   + T
Sbjct: 242 VRDGQRLIAVVFGTNSEQSRAAETQKLLTYGFRFFETQTFYQKGT 286


>gi|204930006|ref|ZP_03221027.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204321000|gb|EDZ06201.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 400

 Score =  308 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 80/274 (29%), Positives = 139/274 (50%), Gaps = 11/274 (4%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLT 81
           R++     +LFL    +    +  A P     + I++D    ++      DE   PASLT
Sbjct: 9   RSLAAGSVLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLT 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILAL 135
           K+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +       +
Sbjct: 69  KIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGI 128

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I +S ND   A  ++++GS++ F  LM+  AK++G+ NT ++   GL    Q +TARD A
Sbjct: 129 IIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMA 188

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVT 254
           +LG  L  + P  Y     ++F + N    N N+LL   + ++DG+KTG T  +G+N+V 
Sbjct: 189 LLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVA 248

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 249 SATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 282


>gi|16764225|ref|NP_459840.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|167992114|ref|ZP_02573212.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|16419371|gb|AAL19799.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|205329616|gb|EDZ16380.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261246119|emb|CBG23922.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6
           precursor) [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267992623|gb|ACY87508.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157447|emb|CBW16936.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6
           precursor) [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312911888|dbj|BAJ35862.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321226445|gb|EFX51496.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323129170|gb|ADX16600.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332987795|gb|AEF06778.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 400

 Score =  308 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 80/274 (29%), Positives = 139/274 (50%), Gaps = 11/274 (4%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLT 81
           R++     +LFL    +    +  A P     + I++D    ++      DE   PASLT
Sbjct: 9   RSLAAGSVLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLT 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILAL 135
           K+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +       +
Sbjct: 69  KIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGI 128

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I +S ND   A  ++++GS++ F  LM+  AK++G+ NT ++   GL    Q +TARD A
Sbjct: 129 IIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMA 188

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVT 254
           +LG  L  + P  Y     ++F + N    N N+LL   + ++DG+KTG T  +G+N+V 
Sbjct: 189 LLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVA 248

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 249 SATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 282


>gi|16759773|ref|NP_455390.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29142454|ref|NP_805796.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56414047|ref|YP_151122.1| D-alanyl-D-alanine carboxypeptidase subunit C [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62179427|ref|YP_215844.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161614874|ref|YP_001588839.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|168263619|ref|ZP_02685592.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|194445951|ref|YP_002040103.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194470485|ref|ZP_03076469.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|197262228|ref|ZP_03162302.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197362970|ref|YP_002142607.1| D-alanyl-D-alanine carboxypeptidase subunit C [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|200391099|ref|ZP_03217710.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205352115|ref|YP_002225916.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207856297|ref|YP_002242948.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|213583237|ref|ZP_03365063.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213612370|ref|ZP_03370196.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|224582675|ref|YP_002636473.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|289827182|ref|ZP_06545924.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25297768|pir||AD0604 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6
           precursor) [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16502066|emb|CAD05302.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6
           precursor) [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29138084|gb|AAO69645.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56128304|gb|AAV77810.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6
           precursor) [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62127060|gb|AAX64763.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161364238|gb|ABX68006.1| hypothetical protein SPAB_02628 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404614|gb|ACF64836.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194456849|gb|EDX45688.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|197094447|emb|CAR59963.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6
           precursor) [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197240483|gb|EDY23103.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|199603544|gb|EDZ02090.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205271896|emb|CAR36737.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6
           precursor) [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205347698|gb|EDZ34329.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206708100|emb|CAR32392.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6
           precursor) [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224467202|gb|ACN45032.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6
           precursor) [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|320085138|emb|CBY94925.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322713895|gb|EFZ05466.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|326622581|gb|EGE28926.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326627157|gb|EGE33500.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 400

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 80/274 (29%), Positives = 139/274 (50%), Gaps = 11/274 (4%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLT 81
           R++     +LFL    +    +  A P     + I++D    ++      DE   PASLT
Sbjct: 9   RSLAAGSVLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLT 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILAL 135
           K+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +       +
Sbjct: 69  KIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGI 128

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I +S ND   A  ++++GS++ F  LM+  AK++G+ NT ++   GL    Q +TARD A
Sbjct: 129 IIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMA 188

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVT 254
           +LG  L  + P  Y     ++F + N    N N+LL   + ++DG+KTG T  +G+N+V 
Sbjct: 189 LLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVA 248

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 249 SATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 282


>gi|146329552|ref|YP_001209791.1| D-alanyl-D-alanine carboxypeptidase [Dichelobacter nodosus
           VCS1703A]
 gi|146233022|gb|ABQ14000.1| D-alanyl-D-alanine carboxypeptidase [Dichelobacter nodosus
           VCS1703A]
          Length = 375

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 79/272 (29%), Positives = 144/272 (52%), Gaps = 4/272 (1%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASL 80
           ++ ++   +   +LF  +       +L   P  S +++D    Q+   +  DE   PAS+
Sbjct: 2   LFWKKCCFVTVFLLFFGVRAEVPPPDL---PVKSYLLMDAQSGQILAERAADERLPPASI 58

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           TK+MT Y+ F  L++ K+HL   + +S  A  QN S+++++  +  +    +  +I +S 
Sbjct: 59  TKLMTAYVTFNALKTGKIHLTDLVTISANARAQNGSRMFVEVNSQVSVNDLLQGMIVQSG 118

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND S A  E+I G+   F  +M+  AK++ +Q T Y+N +G+ D+   +TA D A L   
Sbjct: 119 NDASVALAEYIGGTVAGFVHMMNATAKQLDLQKTHYQNPTGMPDEQHFSTAHDIARLAQA 178

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           L ++FP++Y ++  ++F + N    N N+LL +  N+DG+KTGYT  +G+ +  S +  D
Sbjct: 179 LIRDFPEFYHFYQQKEFTWNNIKQPNRNRLLWRNQNVDGLKTGYTDAAGYCLAASEKRGD 238

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
             ++ VV+G     +R   A  L+       T
Sbjct: 239 WRLIGVVLGAEKEAQRYDAAENLLNFGFANYT 270


>gi|71736558|ref|YP_276518.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557111|gb|AAZ36322.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 395

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 81/284 (28%), Positives = 141/284 (49%), Gaps = 11/284 (3%)

Query: 23  YIQRNIQLMGKILFLSII----MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           + +R   L+  I+  ++     M   A +L AK   S +++D     +      D+   P
Sbjct: 15  FAKRLCLLVPLIITPTVWAAEQMTPAAPQLAAK---SYVLMDATSGNVLVENNGDQRLAP 71

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT YI    ++  ++  N  + +S+ A     S++++K  +  T    +  +I 
Sbjct: 72  ASLTKLMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIII 131

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E I+GSE  FA +M+  A  +GM N+ + N +GL +    ++A D AIL
Sbjct: 132 QSGNDASVAISEHIAGSEDAFADMMNKTAGDLGMTNSHFMNPTGLPNPEHYSSAHDMAIL 191

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              +    P +Y  +S ++F +      N N LL +   +DG+KTG+T  +G+ +V+S  
Sbjct: 192 ARAIIHEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAV 251

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQT 298
                ++AVV G  + Q R  +  +L+T    F E +    + T
Sbjct: 252 RDGMRLIAVVFGTNSEQARAAETQKLLTYGFRFFETQNFYQKGT 295


>gi|313500782|gb|ADR62148.1| DacA [Pseudomonas putida BIRD-1]
          Length = 386

 Score =  308 bits (789), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 81/285 (28%), Positives = 139/285 (48%), Gaps = 13/285 (4%)

Query: 27  NIQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQ-DEPRY 76
           NI  + K L L ++++   +   A+            S +++D +   +      DE   
Sbjct: 2   NITNLAKRLCLPVLLLITPAAFAAEQMTPAPPQLAAKSYVLMDASSGNVLVENNGDERLP 61

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT YI    ++  ++  +  + VS+ A     S++++K  +  T    +  +I
Sbjct: 62  PASLTKLMTAYIATLDIRRGQIGESDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGII 121

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E I+GSE  FA +M+  A  +GM N+ + N +GL      ++A D A 
Sbjct: 122 IQSGNDASVALAEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPHPEHYSSAHDMAT 181

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   +    P +Y  +S ++F + N    N N LL +   +DG+KTG+T  +G+ +V S 
Sbjct: 182 LARAIINVDPAHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVASA 241

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQT 298
                 ++AVV G  + Q R  +  +L+T    F E +T   + T
Sbjct: 242 VRDGQRLIAVVFGTNSEQSRAAETQKLLTYGFRFFETQTFYQKGT 286


>gi|26991483|ref|NP_746908.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida
           KT2440]
 gi|24986562|gb|AAN70372.1|AE016679_4 D-alanyl-D-alanine carboxypeptidase [Pseudomonas putida KT2440]
          Length = 386

 Score =  308 bits (789), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 81/285 (28%), Positives = 139/285 (48%), Gaps = 13/285 (4%)

Query: 27  NIQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQ-DEPRY 76
           NI  + K L L ++++   +   A+            S +++D +   +      DE   
Sbjct: 2   NITNLAKRLCLPVLLLITPAAFAAEQMTPAPPQLAAKSYVLMDASSGNVLVENNGDERLP 61

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT YI    ++  ++  +  + VS+ A     S++++K  +  T    +  +I
Sbjct: 62  PASLTKLMTAYIATLDIRRGQIGESDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGII 121

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E I+GSE  FA +M+  A  +GM N+ + N +GL      ++A D A 
Sbjct: 122 IQSGNDASVALAEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPHPEHYSSAHDMAT 181

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   +    P +Y  +S ++F + N    N N LL +   +DG+KTG+T  +G+ +V S 
Sbjct: 182 LARAIINVDPAHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVASA 241

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQT 298
                 ++AVV G  + Q R  +  +L+T    F E +T   + T
Sbjct: 242 VRDGQRLIAVVFGTNSEQSRAAETQKLLTYGFRFFETQTFYQKGT 286


>gi|77166090|ref|YP_344615.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrosococcus oceani ATCC
           19707]
 gi|254435823|ref|ZP_05049330.1| D-alanyl-D-alanine carboxypeptidase family [Nitrosococcus oceani
           AFC27]
 gi|76884404|gb|ABA59085.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Nitrosococcus oceani ATCC 19707]
 gi|207088934|gb|EDZ66206.1| D-alanyl-D-alanine carboxypeptidase family [Nitrosococcus oceani
           AFC27]
          Length = 382

 Score =  308 bits (789), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 82/257 (31%), Positives = 140/257 (54%), Gaps = 4/257 (1%)

Query: 36  FLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFE 91
           FL          + A P  S+   ++ D    ++    Q DE   PAS+TK+MT Y++F+
Sbjct: 17  FLGAEAWGQPLPIPAPPSLSAKAYLLQDFATGRVLAESQADERIEPASITKLMTAYVVFK 76

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            L+  ++HL  ++ +S+ A     S+ +++  T    E  I  +I +S ND S A  E +
Sbjct: 77  ELKQGRIHLADEVLISEKAWRTGGSRTFIEVNTRVPVETLIKGMIIQSGNDASVALAEHV 136

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            G+E+ FA LM+ +A+ +GM  + + N++GL   N   TARD A LG  + ++FP+YY +
Sbjct: 137 GGTEEIFAALMNQQAQLLGMTGSHFVNSTGLPHSNHYMTARDIATLGRAIIRDFPKYYSW 196

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           +S + F Y      N N LL +  ++DG KTG+T ++G+ + +S       ++AVVMG  
Sbjct: 197 YSEQAFTYNGITQYNRNLLLRRDSSVDGFKTGHTNSAGYCLASSAMRDGMRLIAVVMGTG 256

Query: 272 TSQERDQKALELITSFL 288
           + + R Q++L L+    
Sbjct: 257 SPKIRAQESLALLNYGF 273


>gi|331011314|gb|EGH91370.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 386

 Score =  308 bits (789), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 81/284 (28%), Positives = 141/284 (49%), Gaps = 11/284 (3%)

Query: 23  YIQRNIQLMGKILFLSII----MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           + +R   L+  I+  ++     M   A +L AK   S +++D     +      D+   P
Sbjct: 6   FAKRLCLLVPLIITPTVWAAEQMTPAAPQLAAK---SYVLMDATSGNVLVENNGDQRLAP 62

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT YI    ++  ++  N  + +S+ A     S++++K  +  T    +  +I 
Sbjct: 63  ASLTKLMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIII 122

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E I+GSE  FA +M+  A  +GM N+ + N +GL +    ++A D AIL
Sbjct: 123 QSGNDASVAISEHIAGSEDAFADMMNKTAGDLGMTNSHFMNPTGLPNPEHYSSAHDMAIL 182

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              +    P +Y  +S ++F +      N N LL +   +DG+KTG+T  +G+ +V+S  
Sbjct: 183 ARAIIHEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAV 242

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQT 298
                ++AVV G  + Q R  +  +L+T    F E +    + T
Sbjct: 243 RDGMRLIAVVFGTNSEQARAAETQKLLTYGFRFFETQNFYQKGT 286


>gi|257482223|ref|ZP_05636264.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289625781|ref|ZP_06458735.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289648433|ref|ZP_06479776.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298488990|ref|ZP_07007013.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|302185158|ref|ZP_07261831.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           syringae 642]
 gi|298156488|gb|EFH97585.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320322699|gb|EFW78792.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330516|gb|EFW86495.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330867177|gb|EGH01886.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330871065|gb|EGH05774.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330873695|gb|EGH07844.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330987605|gb|EGH85708.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 386

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 81/284 (28%), Positives = 141/284 (49%), Gaps = 11/284 (3%)

Query: 23  YIQRNIQLMGKILFLSII----MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           + +R   L+  I+  ++     M   A +L AK   S +++D     +      D+   P
Sbjct: 6   FAKRLCLLVPLIITPTVWAAEQMTPAAPQLAAK---SYVLMDATSGNVLVENNGDQRLAP 62

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT YI    ++  ++  N  + +S+ A     S++++K  +  T    +  +I 
Sbjct: 63  ASLTKLMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIII 122

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E I+GSE  FA +M+  A  +GM N+ + N +GL +    ++A D AIL
Sbjct: 123 QSGNDASVAISEHIAGSEDAFADMMNKTAGDLGMTNSHFMNPTGLPNPEHYSSAHDMAIL 182

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              +    P +Y  +S ++F +      N N LL +   +DG+KTG+T  +G+ +V+S  
Sbjct: 183 ARAIIHEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAV 242

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQT 298
                ++AVV G  + Q R  +  +L+T    F E +    + T
Sbjct: 243 RDGMRLIAVVFGTNSEQARAAETQKLLTYGFRFFETQNFYQKGT 286


>gi|237730821|ref|ZP_04561302.1| D-alanyl-D-alanine carboxypeptidase fraction C [Citrobacter sp.
           30_2]
 gi|226906360|gb|EEH92278.1| D-alanyl-D-alanine carboxypeptidase fraction C [Citrobacter sp.
           30_2]
          Length = 407

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 83/288 (28%), Positives = 142/288 (49%), Gaps = 11/288 (3%)

Query: 12  KTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTG 68
            T + +        R+      +L L    +  A +  A P     + I++D    ++  
Sbjct: 2   DTRVAFMTQYFSSLRSFAAGSALLILLAPTVQAAEQPTAPPSVDARAWILMDYASGKVLA 61

Query: 69  F-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLK 121
               DE   PASLTK+MT Y++ + L++ K++LN  + V K A        +  S ++LK
Sbjct: 62  EGNADEKLDPASLTKIMTSYVVGQALKAGKINLNDMVTVGKDAWATGNPALRGSSVMFLK 121

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
                        +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   G
Sbjct: 122 PGDQVAVSDLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHG 181

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGI 240
           L    Q +TARD A+LG  L  + P+ Y     ++F +      N N+LL   + N+DG+
Sbjct: 182 LDAAGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSTNLNVDGM 241

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 242 KTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 289


>gi|197104762|ref|YP_002130139.1| D-alanyl-D-alanine carboxypeptidase [Phenylobacterium zucineum
           HLK1]
 gi|196478182|gb|ACG77710.1| D-alanyl-D-alanine carboxypeptidase [Phenylobacterium zucineum
           HLK1]
          Length = 417

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 101/243 (41%), Positives = 157/243 (64%), Gaps = 1/243 (0%)

Query: 48  LHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
                KY++IV+D    ++      D PRYPAS+TK+MTLY+ FE L S K+ L+ ++  
Sbjct: 37  AQTSSKYAAIVVDAKTGEVLYENRADSPRYPASITKVMTLYLTFEALASGKIDLDDRVVF 96

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
           S  AA Q P+KL ++     + ++ + AL T+SAND + A  E ++G+E++FA LM+ +A
Sbjct: 97  SPRAAAQPPTKLGVRAGDSISVDEAMKALATKSANDAAVALAEKLAGTEQRFAALMTLRA 156

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
           +++GM +T + NASGL D  Q++TARD AIL   + +++PQYYK FS++ F +R + + N
Sbjct: 157 RELGMTDTNFANASGLPDSRQVSTARDIAILSRAVMRDYPQYYKLFSLQYFNFRGQTMRN 216

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           HN LL++M  +DG+KTG+   SGFN+  S       ++AVV+G PTS+ RD  A  L+ +
Sbjct: 217 HNGLLHRMDGVDGLKTGFINASGFNLAASAVRDGRRLIAVVLGGPTSRARDNNAESLLLT 276

Query: 287 FLE 289
             E
Sbjct: 277 GFE 279


>gi|213648937|ref|ZP_03378990.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
          Length = 387

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 80/274 (29%), Positives = 139/274 (50%), Gaps = 11/274 (4%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLT 81
           R++     +LFL    +    +  A P     + I++D    ++      DE   PASLT
Sbjct: 9   RSLAAGSVLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLT 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILAL 135
           K+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +       +
Sbjct: 69  KIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGI 128

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I +S ND   A  ++++GS++ F  LM+  AK++G+ NT ++   GL    Q +TARD A
Sbjct: 129 IIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMA 188

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVT 254
           +LG  L  + P  Y     ++F + N    N N+LL   + ++DG+KTG T  +G+N+V 
Sbjct: 189 LLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVA 248

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 249 SATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 282


>gi|330969439|gb|EGH69505.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 386

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 80/284 (28%), Positives = 141/284 (49%), Gaps = 11/284 (3%)

Query: 23  YIQRNIQLMGKILFLSII----MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           + +R   L+  I+  ++     M   A +L AK   + +++D     +      D+   P
Sbjct: 6   FAKRLCLLVPLIITPTVWAAEQMTPAAPQLAAK---AYVLMDATSGNVLVENNGDQRLAP 62

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT YI    ++  ++  N  + +S+ A     S++++K  +  T    +  +I 
Sbjct: 63  ASLTKLMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIII 122

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E I+GSE  FA +M+  A  +GM N+ + N +GL +    ++A D AIL
Sbjct: 123 QSGNDASVAISEHIAGSEDAFADMMNKTAGDLGMTNSHFMNPTGLPNPEHYSSAHDMAIL 182

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              +    P +Y  +S ++F +      N N LL +   +DG+KTG+T  +G+ +V+S  
Sbjct: 183 ARAIIHEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAV 242

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQT 298
                ++AVV G  + Q R  +  +L+T    F E +    + T
Sbjct: 243 RDGMRLIAVVFGTNSEQARAAETQKLLTYGFRFFETQNFYQKGT 286


>gi|30249456|ref|NP_841526.1| D-alanyl-D-alanine carboxypeptidase [Nitrosomonas europaea ATCC
           19718]
 gi|30138819|emb|CAD85396.1| D-alanyl-D-alanine carboxypeptidase 1 (S11) family [Nitrosomonas
           europaea ATCC 19718]
          Length = 385

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 82/276 (29%), Positives = 150/276 (54%), Gaps = 6/276 (2%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKP-----KYSSIVIDVNKNQMTGFKQDEPR 75
            + I+    LM + +F   ++ +++     +P       S I+ID + +Q         R
Sbjct: 3   RVIIKLLQILMKQFIFSLFLLATISPAWSQQPELAVAAKSFILIDFHSSQTLASSNPHER 62

Query: 76  Y-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
             PASLTK+MT Y++F  LQ +++ ++  +PVS  +     S+++++     T ++ I  
Sbjct: 63  LDPASLTKLMTAYVVFSALQQERIKIDQVVPVSNRSWRMVGSRMFIEPNKQVTVDELIHG 122

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +I +S ND   A  E I+GSE  F  +M+ +AK++GM NT + N++GL   +  +TA D 
Sbjct: 123 VIVQSGNDACVALAELIAGSEDLFVHMMNEEAKRLGMHNTHFTNSTGLTHSDHYSTAHDL 182

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
           A+L   + ++FP+ Y  +S+R++ Y      N N+LL    N+DG+KTG+T  +G+ +VT
Sbjct: 183 ALLAAAIIRDFPERYPLYSLREYTYNGITQQNRNRLLWTDPNVDGMKTGWTEAAGYCLVT 242

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           S +     +++VVMG  +   R  ++  L+    + 
Sbjct: 243 SAKRDQRRLISVVMGTASPNARSIESQRLLNYGFQF 278


>gi|126665209|ref|ZP_01736192.1| D-alanyl-D-alanine carboxypeptidase [Marinobacter sp. ELB17]
 gi|126630579|gb|EBA01194.1| D-alanyl-D-alanine carboxypeptidase [Marinobacter sp. ELB17]
          Length = 392

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 146/279 (52%), Gaps = 4/279 (1%)

Query: 14  FLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD- 72
           F++    + ++   + ++        ++I    ++      S ++++    Q+       
Sbjct: 7   FISLFRSAFFVYTLLLVVAGNALAQTVLIPAPPQI---AGSSYVLMEPKSGQVIMENNSS 63

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           E   PASLTKMMT YI+   L   ++ +   +P+S TA     S+ +++E T  T E  +
Sbjct: 64  ERLPPASLTKMMTAYIVERELDEGRIAMGDMVPISVTAWQTGGSRTFVREGTSVTVEDLL 123

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             ++ +S ND S A  EF++GSE  F  +M+ +A  +GM NT ++NA+GL   N  +TA+
Sbjct: 124 RGVVIQSGNDASVALAEFVAGSEGAFVDIMNQQADLLGMTNTNFENATGLPSPNHYSTAQ 183

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           D A+L      ++P+ Y  ++ + F + N    N N LL + +++DG+KTG+T  +G+ +
Sbjct: 184 DLALLAQATINDYPETYPIYAEKHFTFNNIRQPNRNSLLWRDNSVDGLKTGHTEEAGYCL 243

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
           V S +  D   +AVVMG  +++ R Q+  +++       
Sbjct: 244 VASAKRDDTRFIAVVMGARSAESRSQEVQKMLNYGFRYY 282


>gi|149377633|ref|ZP_01895371.1| D-alanyl-D-alanine carboxypeptidase [Marinobacter algicola DG893]
 gi|149358106|gb|EDM46590.1| D-alanyl-D-alanine carboxypeptidase [Marinobacter algicola DG893]
          Length = 388

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 79/267 (29%), Positives = 145/267 (54%), Gaps = 4/267 (1%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPR-YPASLTKMM 84
            ++  IL  ++ + + A  + + P+ ++   I++D    ++   +    R  PASLTKMM
Sbjct: 12  AVLLLILLPAMPVAAQAVLIPSSPQIAASSYILMDPLSGRVIMEENSHERLPPASLTKMM 71

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T YI+   L   ++ L+  +P+S  A     S+ ++KE T  + E  +  +I +S ND S
Sbjct: 72  TAYIVERELDEGRISLSDMVPISVNAWRTEGSRTFVKEGTEVSVENLLKGVIIQSGNDAS 131

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  E+I+GSE  F  +M+ +A+ +GM  + + NA+GL   +  +TA D A+L   +  +
Sbjct: 132 VALAEYIAGSEGAFVDIMNQQAQILGMNESSFANATGLPAPDHFSTAYDLALLAKAIIND 191

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           +P+ Y  ++ + F Y N    N N LL +  ++DG+KTG+T  +G+ +V S +  D  ++
Sbjct: 192 YPENYPLYAQKHFTYNNIRQPNRNSLLWRDDSVDGLKTGHTEEAGYCLVASAKRNDTRLI 251

Query: 265 AVVMGMPTSQERDQKALELITSFLEKK 291
           AVVMG  ++  R Q+  +++       
Sbjct: 252 AVVMGTDSTSSRAQEVQKMLNYGFRYY 278


>gi|291085651|ref|ZP_06353607.2| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC
           29220]
 gi|291070535|gb|EFE08644.1| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC
           29220]
          Length = 413

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 83/288 (28%), Positives = 142/288 (49%), Gaps = 11/288 (3%)

Query: 12  KTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTG 68
            T + +        R+      +L L    +  A +  A P     + I++D    ++  
Sbjct: 8   DTRVAFMTQYFSSLRSFAAGSALLILLAPTVQAAEQPTAPPSVDARAWILMDYASGKVLA 67

Query: 69  F-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLK 121
               DE   PASLTK+MT Y++ + L++ K++LN  + V K A        +  S ++LK
Sbjct: 68  EGNADEKLDPASLTKIMTSYVVGQALKAGKINLNDMVTVGKDAWATGNPALRGSSVMFLK 127

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
                        +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   G
Sbjct: 128 PGDQVAVSDLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHG 187

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGI 240
           L    Q +TARD A+LG  L  + P+ Y     ++F +      N N+LL   + N+DG+
Sbjct: 188 LDAAGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSTNLNVDGM 247

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 248 KTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 295


>gi|167035845|ref|YP_001671076.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida GB-1]
 gi|166862333|gb|ABZ00741.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida GB-1]
          Length = 386

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 82/285 (28%), Positives = 140/285 (49%), Gaps = 13/285 (4%)

Query: 27  NIQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQ-DEPRY 76
           NI  + K L L ++++   +   A+            S +++D +   +      DE   
Sbjct: 2   NITNLAKRLCLPVLLMITPAAFAAEQMTPAPPQLAAKSYVLMDASSGNVLVENNGDERLP 61

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT YI    ++  ++  N  + VS+ A     S++++K  +  T    +  +I
Sbjct: 62  PASLTKLMTAYIATLDIRRGQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGII 121

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E I+GSE  FA +M+  A  +GM N+ + N +GL +    ++A D A 
Sbjct: 122 IQSGNDASVALSEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPNPEHYSSAHDMAT 181

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   +    P +Y  +S ++F + N    N N LL +   +DG+KTG+T  +G+ +V S 
Sbjct: 182 LARAIITVDPAHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVASA 241

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQT 298
                 ++AVV G  + Q R  +  +L+T    F E +T   + T
Sbjct: 242 VRDGQRLIAVVFGTNSEQSRAAETQKLLTYGFRFFETQTFYQKGT 286


>gi|161503974|ref|YP_001571086.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865321|gb|ABX21944.1| hypothetical protein SARI_02067 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 400

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 80/274 (29%), Positives = 138/274 (50%), Gaps = 11/274 (4%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLT 81
           R++     +LFL    +    +  A P     + I++D    ++      DE   PASLT
Sbjct: 9   RSLTAGLVLLFLFASSVKAEEQTIAPPDVDARAWILMDYASGKVLAEGNADEKLDPASLT 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILAL 135
           K+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +       +
Sbjct: 69  KIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGI 128

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I +S ND   A  ++++GS++ F  LM+  AK++G+ NT ++   GL    Q +TARD A
Sbjct: 129 IIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMA 188

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVT 254
           +LG  L  + P  Y     ++F + N    N N+LL   +  +DG+KTG T  +G+N+V 
Sbjct: 189 LLGKALIHDVPDEYALHKEKEFTFNNIRQPNRNRLLWSTNLQVDGMKTGTTSGAGYNLVA 248

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 249 SATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 282


>gi|289675748|ref|ZP_06496638.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           syringae FF5]
 gi|330895583|gb|EGH27891.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330976833|gb|EGH76865.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 386

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 80/284 (28%), Positives = 141/284 (49%), Gaps = 11/284 (3%)

Query: 23  YIQRNIQLMGKILFLSII----MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           + +R   L+  I+  ++     M   A +L AK   + +++D     +      D+   P
Sbjct: 6   FAKRLCLLVPLIITPTVWAAEQMTPAAPQLAAK---AYVLMDATSGNVLVENNGDQRLAP 62

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT YI    ++  ++  N  + +S+ A     S++++K  +  T    +  +I 
Sbjct: 63  ASLTKLMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIII 122

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E I+GSE  FA +M+  A  +GM N+ + N +GL +    ++A D AIL
Sbjct: 123 QSGNDASVAISEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPNPEHYSSAHDMAIL 182

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              +    P +Y  +S ++F +      N N LL +   +DG+KTG+T  +G+ +V+S  
Sbjct: 183 ARAIIHEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAV 242

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQT 298
                ++AVV G  + Q R  +  +L+T    F E +    + T
Sbjct: 243 RDGMRLIAVVFGTNSEQARAAETQKLLTYGFRFFETQNFYQKGT 286


>gi|87119258|ref|ZP_01075156.1| D-alanyl-D-alanine carboxypeptidase [Marinomonas sp. MED121]
 gi|86165649|gb|EAQ66916.1| D-alanyl-D-alanine carboxypeptidase [Marinomonas sp. MED121]
          Length = 408

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 77/275 (28%), Positives = 133/275 (48%), Gaps = 4/275 (1%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASL 80
           +  I     +L L   + +  + + A P+ S+   I++D    ++         YP ASL
Sbjct: 29  KPFILFAALMLSLVTSVYAAPTLIPAPPQLSATSYILLDAYTGEVLVEHNSRKEYPPASL 88

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           TK+MT YI+        + L   + VS+ A     S+++++E T    E  +  +I +S 
Sbjct: 89  TKLMTAYIVDYERNRGNIGLEDMVRVSEKAWRMEGSRMFIREGTKVNLEDLMRGIIIQSG 148

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND S A  E I+GSE  FA LM+  A+ +GM N+ + N++G   +   ++A D A+L   
Sbjct: 149 NDASVAVAEHIAGSEGAFADLMNQHAELLGMNNSHFVNSTGYPAEGHYSSAYDLAVLSRA 208

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
               FP  Y  +S + F Y +    N NKLL +   +DG+KTG+T  +G+ +  S     
Sbjct: 209 KIIQFPDSYPMYSEKYFTYNDIRQPNRNKLLWRDKTVDGLKTGHTEAAGYCLAASAVRNG 268

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEKKTLKH 295
             +++VVMG  + + R  +  +L+         + 
Sbjct: 269 TRLISVVMGTKSDEARANETQKLLNYGFRYYETRK 303


>gi|77461187|ref|YP_350694.1| penicillin-binding protein 6 [Pseudomonas fluorescens Pf0-1]
 gi|77385190|gb|ABA76703.1| putative cell division-related protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 385

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 80/266 (30%), Positives = 133/266 (50%), Gaps = 7/266 (2%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQS 95
            +  M+    +L AK   S +++D N   +      D+   PASLTK+MT YI    ++ 
Sbjct: 23  FAAEMMPSPPQLAAK---SYVLMDANSGNVLVENNGDQRLPPASLTKLMTAYIATLEIRR 79

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
            ++  N  + VS+ A     S++++K  +  T    +  +I +S ND S A  E I+GSE
Sbjct: 80  GQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAVAEHIAGSE 139

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             FA LM+     +GM NT + N +GL +    ++A D AIL   +    P +Y  +S +
Sbjct: 140 DAFADLMNKTVADLGMTNTHFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQK 199

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           +F +      N N LL +   +DG+KTG+T  +G+ +V+S       ++AVV G  +   
Sbjct: 200 EFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEVA 259

Query: 276 RDQKALELIT---SFLEKKTLKHQQT 298
           R  +  +L+T    F E +T   + T
Sbjct: 260 RAAETQKLLTYGFRFFETQTFYQKGT 285


>gi|330938277|gb|EGH41938.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 386

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 80/284 (28%), Positives = 141/284 (49%), Gaps = 11/284 (3%)

Query: 23  YIQRNIQLMGKILFLSII----MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           + +R   L+  I+  ++     M   A +L AK   + +++D     +      D+   P
Sbjct: 6   FAKRLCLLVPLIITPTVWAAEQMTPAAPQLAAK---AYVLMDATSGNVLVENNGDQRLAP 62

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT YI    ++  ++  N  + +S+ A     S++++K  +  T    +  +I 
Sbjct: 63  ASLTKLMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIII 122

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E I+GSE  FA +M+  A  +GM N+ + N +GL +    ++A D AIL
Sbjct: 123 QSGNDASVAISEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPNPEHYSSAHDMAIL 182

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              +    P +Y  +S ++F +      N N LL +   +DG+KTG+T  +G+ +V+S  
Sbjct: 183 ARAIIHEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAV 242

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQT 298
                ++AVV G  + Q R  +  +L+T    F E +    + T
Sbjct: 243 RDGMRLIAVVFGTNSEQARAAETQKLLTYGFRFFETQNFYQKGT 286


>gi|323227523|gb|EGA11683.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
          Length = 402

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 79/266 (29%), Positives = 136/266 (51%), Gaps = 11/266 (4%)

Query: 34  ILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYII 89
           +LFL    +    +  A P     + I++D    ++      DE   PASLTK+MT Y++
Sbjct: 17  LLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 76

Query: 90  FEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDV 143
            + L++ K+ L   + V K A        +  S ++LK     +       +I +S ND 
Sbjct: 77  GQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIIIQSGNDA 136

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
             A  ++++GS++ F  LM+  AK++G+ NT ++   GL    Q +TARD A+LG  L  
Sbjct: 137 CIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 196

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           + P  Y     ++F + N    N N+LL   + ++DG+KTG T  +G+N+V S    D  
Sbjct: 197 DVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVASATQGDMR 256

Query: 263 IVAVVMGMPTSQERDQKALELITSFL 288
           +++VV+G  T + R  ++ +L+T   
Sbjct: 257 LISVVLGAKTDRIRFNESEKLLTWGF 282


>gi|260597233|ref|YP_003209804.1| D-alanyl-D-alanine carboxypeptidase fraction C [Cronobacter
           turicensis z3032]
 gi|260216410|emb|CBA29490.1| D-alanyl-D-alanine carboxypeptidase dacC [Cronobacter turicensis
           z3032]
          Length = 403

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 82/277 (29%), Positives = 141/277 (50%), Gaps = 12/277 (4%)

Query: 24  IQRNIQLMGKILFLSIIMI----SMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPA 78
            +R + L G  L +S+        +A         + I++D +  ++      DE   PA
Sbjct: 9   ARRVLALSGAFLLMSLSTAHAADPIAPVAPDVDARAWILMDYHSGKVLAEGNADEKLDPA 68

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGI 132
           SLTK+MT Y++ + L++ K+HL+ ++ V K A        +  S ++LK     +     
Sbjct: 69  SLTKLMTSYVVGQALKAGKIHLDDKVTVGKDAWATGNPALRGSSLMFLKPGDQVSVADLN 128

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             +I +S ND S A  ++++GS+  F  LM+  AK++G+ +T +K   GL    Q +TAR
Sbjct: 129 KGVIIQSGNDASIAIADYVAGSQDAFVGLMNGYAKRLGLTSTTFKTVHGLDAPGQFSTAR 188

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFN 251
           D A+LG  L  + P  Y     ++F +      N N+LL     N+DG+KTG T  +G+N
Sbjct: 189 DMALLGKALIHDVPDEYAIHKEKEFTFNKIRQPNRNRLLWSSSMNVDGMKTGTTAGAGYN 248

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +V S    D  +++VV+G  T   R +++ +L+T   
Sbjct: 249 LVASATQGDMRLISVVLGAKTDGIRFRESEKLLTWGF 285


>gi|28871936|ref|NP_794555.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213968044|ref|ZP_03396190.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           tomato T1]
 gi|301383639|ref|ZP_07232057.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           tomato Max13]
 gi|302063161|ref|ZP_07254702.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           tomato K40]
 gi|302131282|ref|ZP_07257272.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28855189|gb|AAO58250.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213927387|gb|EEB60936.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           tomato T1]
 gi|330873583|gb|EGH07732.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963469|gb|EGH63729.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331014742|gb|EGH94798.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 386

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 81/284 (28%), Positives = 140/284 (49%), Gaps = 11/284 (3%)

Query: 23  YIQRNIQLMGKILFLSII----MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           + +R   L+  I+  +      M   A +L AK   S +++D     +      D+   P
Sbjct: 6   FAKRLCLLVPLIITPAAWAAEQMTPAAPQLAAK---SYVLMDATSGNVLVENNGDQRLAP 62

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT YI    ++  ++  N  + +S+ A     S++++K  +  T    +  +I 
Sbjct: 63  ASLTKLMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIII 122

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E I+GSE  FA +M+  A  +GM N+ + N +GL +    ++A D AIL
Sbjct: 123 QSGNDASVAISEHIAGSEDAFADMMNKTAGDLGMTNSHFMNPTGLPNPEHYSSAHDMAIL 182

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              +    P +Y  +S ++F +      N N LL +   +DG+KTG+T  +G+ +V+S  
Sbjct: 183 ARAIIHEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAV 242

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQT 298
                ++AVV G  + Q R  +  +L+T    F E +    + T
Sbjct: 243 RDGMRLIAVVFGTNSEQARAAETQKLLTYGFRFFETQNFYQKGT 286


>gi|90419583|ref|ZP_01227493.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336520|gb|EAS50261.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 500

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 119/267 (44%), Positives = 175/267 (65%), Gaps = 1/267 (0%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLY 87
           +  G +   + +++S    + A  KY+  VID N  Q+    + DE RYPASLTKMMTLY
Sbjct: 25  RFAGVVAIGAGMLLSAVGHVEANDKYAGFVIDANNGQVLYNDRADEYRYPASLTKMMTLY 84

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + F+ L+S ++ ++ ++PVS  AA + PSK+ LK  +  T E+ + +L+T+SAND +   
Sbjct: 85  MTFDALKSGRISMSDKMPVSAYAAARPPSKIGLKAGSTLTVEEAVYSLVTKSANDAAVVL 144

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
           GEF +GSE  FA  M+ KA++IGM  T ++NA+GL D  Q TTARD A LGI LR++FP+
Sbjct: 145 GEFQAGSESAFAARMTAKARQIGMPKTTFRNANGLPDSEQKTTARDMATLGIALREHFPE 204

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           YYK FS R + +R R + NHN++L ++  +DGIKTGY   SGFN+VTS+      +VAVV
Sbjct: 205 YYKIFSTRSYSFRGRRLGNHNRVLGRVKGVDGIKTGYINASGFNLVTSIERDGKSLVAVV 264

Query: 268 MGMPTSQERDQKALELITSFLEKKTLK 294
           MG  + + RD   +EL+T +L K + +
Sbjct: 265 MGGRSGRSRDDHMVELLTRYLPKASTR 291


>gi|281416991|ref|ZP_06248011.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           JW20]
 gi|281408393|gb|EFB38651.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           JW20]
          Length = 384

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 149/306 (48%), Gaps = 3/306 (0%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
           R++ ++  I F  ++    A         S+I+I+ +  Q+   K  D P  PAS+TK+M
Sbjct: 8   RSVSVLAVITFFVMMFQVTAFAQFESSAQSAILIEASTGQVLYEKNADVPMPPASITKIM 67

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TL + FE L+   +  + ++ +S+ A     SK++L         + +  +   SAND  
Sbjct: 68  TLLLGFEALEKGLVKWDDEVIISEKAWRMEGSKMFLLVGDKAKFGEIMTGISVVSANDGC 127

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  E + GSE+ F  +M+ +AK++G+ NT + N++GL  +  + +ARD + L   L +N
Sbjct: 128 VALAEHLYGSEEAFVQVMNTRAKELGLTNTNFANSNGLPAEGHVMSARDISTLARYLIQN 187

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           +P+  +  S  ++ Y N    N N LL      DG+KTG+T  +G+ IV + +     ++
Sbjct: 188 YPKILELESTTEYTYNNIRQFNRNPLLGVFPGADGLKTGWTEEAGYCIVGTAQQNGQRMI 247

Query: 265 AVVMGMPTSQERDQKALELITSFLE--KKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTY 322
            VV+   + +ER +   EL+    +  K+          D++   + KK  +  KL    
Sbjct: 248 GVVLKTSSEKERSKAIQELLNYGFKNFKQVTVKNAGEIVDSIEVKNGKKLSVSLKLDSDI 307

Query: 323 SQFKKI 328
           S    +
Sbjct: 308 STVIPV 313


>gi|322616338|gb|EFY13247.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619588|gb|EFY16463.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622716|gb|EFY19561.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628628|gb|EFY25415.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631565|gb|EFY28321.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637092|gb|EFY33795.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322641708|gb|EFY38344.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322644498|gb|EFY41038.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648431|gb|EFY44883.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654166|gb|EFY50489.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658081|gb|EFY54348.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663555|gb|EFY59757.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322670291|gb|EFY66431.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671527|gb|EFY67649.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676883|gb|EFY72950.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682808|gb|EFY78827.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322686487|gb|EFY82469.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323196059|gb|EFZ81222.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196794|gb|EFZ81938.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323204806|gb|EFZ89801.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323208966|gb|EFZ93903.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323209715|gb|EFZ94642.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215197|gb|EFZ99942.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222423|gb|EGA06799.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323229875|gb|EGA13998.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233100|gb|EGA17196.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240835|gb|EGA24877.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323243152|gb|EGA27172.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248693|gb|EGA32621.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251695|gb|EGA35562.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323257509|gb|EGA41197.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261490|gb|EGA45071.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267921|gb|EGA51400.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323272012|gb|EGA55427.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 400

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 79/266 (29%), Positives = 136/266 (51%), Gaps = 11/266 (4%)

Query: 34  ILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYII 89
           +LFL    +    +  A P     + I++D    ++      DE   PASLTK+MT Y++
Sbjct: 17  LLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 76

Query: 90  FEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDV 143
            + L++ K+ L   + V K A        +  S ++LK     +       +I +S ND 
Sbjct: 77  GQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIIIQSGNDA 136

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
             A  ++++GS++ F  LM+  AK++G+ NT ++   GL    Q +TARD A+LG  L  
Sbjct: 137 CIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 196

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           + P  Y     ++F + N    N N+LL   + ++DG+KTG T  +G+N+V S    D  
Sbjct: 197 DVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVASATQGDMR 256

Query: 263 IVAVVMGMPTSQERDQKALELITSFL 288
           +++VV+G  T + R  ++ +L+T   
Sbjct: 257 LISVVLGAKTDRIRFNESEKLLTWGF 282


>gi|71905933|ref|YP_283520.1| penicillin-binding protein 6 [Dechloromonas aromatica RCB]
 gi|71845554|gb|AAZ45050.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Dechloromonas aromatica RCB]
          Length = 391

 Score =  306 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 89/263 (33%), Positives = 151/263 (57%), Gaps = 7/263 (2%)

Query: 33  KILFLSIIMI--SMASELHAKPK---YSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTL 86
             + LSI+    +MA +L   P     S ++++V  NQ+    K DE   PASLTK+MT 
Sbjct: 20  AFILLSIVTAGQAMAQQLPVPPALAAKSWLLLEVGSNQVLTAEKSDERLEPASLTKLMTA 79

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y+ F  ++ K + L+  +PVS+ A     SK++++  T    E  I  +I +S ND    
Sbjct: 80  YLTFAAIRQKTIGLSQTLPVSEKAWRTGGSKMFVRVDTQVPVEDLIKGMIVQSGNDACVT 139

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E I+GSE+ FA +M+ +A+++GM N+ + N++GL D    TTARD ++L   L ++FP
Sbjct: 140 LAEGIAGSEENFAQMMNREAQRLGMTNSHFINSTGLPDPQHYTTARDLSLLASALIRDFP 199

Query: 207 Q-YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           + Y KY+S+++FRY N    N N+LL     +DG+KTG+T  +G+ +++S       +++
Sbjct: 200 EDYKKYYSMKEFRYNNITQPNRNRLLFIDPTVDGVKTGHTEAAGYCLISSALRDKRRLLS 259

Query: 266 VVMGMPTSQERDQKALELITSFL 288
           VV+G  +   R  ++ +L+    
Sbjct: 260 VVLGTTSDSARATESQKLLNWGF 282


>gi|221235180|ref|YP_002517616.1| D-alanyl-D-alanine serine-type carboxypeptidase [Caulobacter
           crescentus NA1000]
 gi|220964352|gb|ACL95708.1| D-alanyl-D-alanine serine-type carboxypeptidase [Caulobacter
           crescentus NA1000]
          Length = 451

 Score =  306 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 108/242 (44%), Positives = 157/242 (64%), Gaps = 1/242 (0%)

Query: 49  HAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS 107
            ++PKY++IVID N  ++   K  D PRYPAS+TK+MTLY+ FE L   +L L  QI +S
Sbjct: 58  ASEPKYAAIVIDANSGEVLYDKRGDSPRYPASITKVMTLYLTFEALSEGRLKLTDQIVMS 117

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
             AA Q P+K+ L+     T ++ I A+  +SANDV+TA  E ++GSE +FA LM+ + +
Sbjct: 118 PRAAAQAPTKIGLRPGESMTVDEAIKAMAVKSANDVATAVAERLAGSESRFAALMTLRGQ 177

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           ++GM+NT + NASGL D  QI+TARD AIL     ++FPQYY YFS++ F +R   +  H
Sbjct: 178 ELGMRNTRFVNASGLPDSRQISTARDLAILSRATMRDFPQYYSYFSVKGFYFRGNYVKGH 237

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           N+LL+ M   DG+KTGYT  SGFN+  S       ++AVV+G P++  RD    +L+ + 
Sbjct: 238 NRLLDSMEGFDGLKTGYTNASGFNLAGSAVRDGRRLIAVVLGGPSTAWRDNNMEDLLLTG 297

Query: 288 LE 289
            +
Sbjct: 298 FD 299


>gi|226942990|ref|YP_002798063.1| D-Alanyl-D-Alanine carboxypeptidase [Azotobacter vinelandii DJ]
 gi|226717917|gb|ACO77088.1| D-Alanyl-D-Alanine carboxypeptidase [Azotobacter vinelandii DJ]
          Length = 404

 Score =  306 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 75/264 (28%), Positives = 134/264 (50%), Gaps = 7/264 (2%)

Query: 42  ISMASELHAKPK---YSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKK 97
            +    + A P+    + +++D    Q+      E R  PASLTK+MT YI    ++  +
Sbjct: 41  AAEPQAIPAPPQLASTAYLLMDAASGQVLIESNGEQRLPPASLTKLMTAYIATLEIKRGQ 100

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           +  +  + VS+ A     S+++++  T  +    +  +I +S ND S A  E I+GSE  
Sbjct: 101 IKESDLVTVSERAWRTGGSRMFIQVGTQVSVSDLLHGIIIQSGNDSSVALAEHIAGSEDA 160

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           FA +M+  A+++G+ NT + NA+GL      ++A D A L   +  + P +Y  ++ ++F
Sbjct: 161 FADMMNATAQRLGLSNTHFMNATGLPHAEHYSSAHDMARLARAIIYDDPAHYAIYAQKEF 220

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
            + N    N N LL +   +DG+KTG+T  +G+ +V S       ++AVV G  + Q R 
Sbjct: 221 FWNNIKQPNRNLLLWRDKTVDGLKTGHTEEAGYCLVASAVRDGQRLIAVVFGTKSEQARA 280

Query: 278 QKALELIT---SFLEKKTLKHQQT 298
            +  +L+T    F E +T   +  
Sbjct: 281 AETQKLLTYGFRFFETQTFFQKNV 304


>gi|150396261|ref|YP_001326728.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae
           WSM419]
 gi|150027776|gb|ABR59893.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae
           WSM419]
          Length = 494

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 132/296 (44%), Positives = 191/296 (64%), Gaps = 12/296 (4%)

Query: 3   QQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMI-SMASELHAKPKYSSIVIDV 61
           Q  I S AK+     PYG+I      +++G+I    +I++ ++++   A  KY+ IV+D 
Sbjct: 10  QSVIPSLAKR-----PYGAIS-----EVVGRIFLAGLIVVLTLSAPALANSKYAGIVVDA 59

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
              ++      D+ RYPASLTKMMTLY+ FE L++ +++ +T +P SK A+ + PSKL +
Sbjct: 60  KTGKVLYGEDADQLRYPASLTKMMTLYLTFEALEAGRINKSTPVPFSKKASAEPPSKLGV 119

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           +     T EQ IL+L+TRSAND +TA  E + GSE++FA +M+NKA+ +GM  T Y+NA 
Sbjct: 120 RAGRSITVEQAILSLVTRSANDSATALAELLGGSEQRFARMMTNKARALGMTRTTYRNAH 179

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI 240
           GL +  Q TTARDQA LGI LR++FPQYY YFS R FR+  + I NHN+LL  +  +DGI
Sbjct: 180 GLPNSEQRTTARDQARLGIALRQHFPQYYDYFSTRSFRFGKQTIGNHNRLLGNVRGVDGI 239

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQ 296
           KTGYTR SGFN+VTS +     IVAVVMG  +   RD +  +L+  ++   + +  
Sbjct: 240 KTGYTRASGFNLVTSAQLGGRSIVAVVMGGTSGGSRDAQMRKLVAKYMPAASRRGG 295


>gi|330959962|gb|EGH60222.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 386

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 80/284 (28%), Positives = 140/284 (49%), Gaps = 11/284 (3%)

Query: 23  YIQRNIQLMGKILFLSII----MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           + +R   L+  I+  +      M   A +L AK   + +++D     +      D+   P
Sbjct: 6   FAKRLCLLVPLIITPAAWAAEQMTPAAPQLAAK---AYVLMDATSGNVLVENNGDQRLAP 62

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT YI    ++  ++  N  + +S+ A     S++++K  +  T    +  +I 
Sbjct: 63  ASLTKLMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIII 122

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E I+GSE  FA +M+  A  +GM N+ + N +GL +    ++A D AIL
Sbjct: 123 QSGNDASVAISEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPNPEHYSSAHDMAIL 182

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              +    P +Y  +S ++F +      N N LL +   +DG+KTG+T  +G+ +V+S  
Sbjct: 183 ARAIIHEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAV 242

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQT 298
                ++AVV G  + Q R  +  +L+T    F E +    + T
Sbjct: 243 RDGMRLIAVVFGTNSEQARAAETQKLLTYGFRFFETQNFYQKGT 286


>gi|313202207|ref|YP_004040865.1| beta-lactamase [Methylovorus sp. MP688]
 gi|312441523|gb|ADQ85629.1| Beta-lactamase [Methylovorus sp. MP688]
          Length = 378

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 94/321 (29%), Positives = 168/321 (52%), Gaps = 20/321 (6%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASELHAKPK---YSSIVIDVNKNQMTGFKQ-DEPRYPA 78
           YI R   L+  +  L++     A+E+   P     S ++ D N       +  DE   PA
Sbjct: 3   YISRIFTLVAAVCSLTV----QAAEIPPPPSLAVKSYVLRDFNSQSTIAQQAGDERVEPA 58

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           SLTK+MT Y+ F+ +++  L L   +P+S  A     SK++++     T ++ +  +I +
Sbjct: 59  SLTKLMTAYLSFKAVKNGHLQLTQTLPISIKAWKVEGSKMFVEPNRPVTVDELLHGMIIQ 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND S A  E I+ +E+ FA LM+ +A ++GM+NT + NA+GL D    TTA D ++L 
Sbjct: 119 SGNDASIALAEGIAITEEAFADLMNKEAARLGMKNTHFMNATGLPDPQHYTTAYDLSLLA 178

Query: 199 ILLRKNFPQ-YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
             L ++FP+ Y + +S +++ Y N    N N+LL     +DG+KTG+T+ +G+ +++S +
Sbjct: 179 SALIRDFPEDYKRLYSQKQYSYNNITQPNRNRLLWLDPYVDGMKTGHTKTAGYCLISSAK 238

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKK----TLKHQQ-------THRKDNLSS 306
             +  +++VV+G P+   R  ++ +L+    +        K  Q          +DNL +
Sbjct: 239 RGETRLISVVLGTPSDSARATESQKLLNYGFQFYESHLVYKRGQPINQLKVWKGQDNLVA 298

Query: 307 TSLKKSLMIKKLKRTYSQFKK 327
            ++   L I   K  Y++ K 
Sbjct: 299 ATVPTDLSITLPKGEYARVKA 319


>gi|167647108|ref|YP_001684771.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caulobacter sp. K31]
 gi|167349538|gb|ABZ72273.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caulobacter sp. K31]
          Length = 435

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 108/242 (44%), Positives = 154/242 (63%), Gaps = 1/242 (0%)

Query: 49  HAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS 107
            A+PKY++IVID N  +M   K  D PRYPAS+TK+MTLY+ FE L   +L L  ++P +
Sbjct: 42  SAEPKYAAIVIDANSGEMLYDKRADSPRYPASVTKVMTLYLTFEALSEGRLKLTDRVPFT 101

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
             AA Q P+KL L      + ++ I A+  +SANDV+ A  E + GSE +FA LM+ + +
Sbjct: 102 ARAAAQAPTKLGLPPGDSISVDEAIRAMTVKSANDVAVAMAERLGGSESRFAALMTLRGQ 161

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           ++GM+N+ + NASGL D  QI+TARD AIL     ++FPQYY YFSI+ F +R R I  H
Sbjct: 162 ELGMRNSRFVNASGLPDSRQISTARDLAILSRATMRDFPQYYSYFSIKGFEFRGRYIAGH 221

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           N+LL  M   DG+KTGYT  SG+N+  S       ++AVV+G  ++  RD    +L+T+ 
Sbjct: 222 NRLLTNMPGFDGLKTGYTNASGYNLAGSAVRDGRRLIAVVLGGSSTAWRDNNMEDLLTTG 281

Query: 288 LE 289
            +
Sbjct: 282 FD 283


>gi|165918943|ref|ZP_02219029.1| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii RSA 334]
 gi|165917340|gb|EDR35944.1| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii RSA 334]
          Length = 384

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 83/266 (31%), Positives = 143/266 (53%), Gaps = 6/266 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
             +++D +   +   K    R  PASLTK+MTLY+ F+ L+S ++HL+ +  VS  A   
Sbjct: 33  GYVLMDADSGIVIAQKNMTQRLQPASLTKLMTLYVTFQALKSAQIHLDDKAKVSVKAWRT 92

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++LKE         I  +I  S ND      ++I G+E  FA +M+  A ++GM+N
Sbjct: 93  GGSRMFLKEGAEVPVNLLIQGIIVASGNDACVTMAQYIGGTEPSFAQMMNQTAARLGMKN 152

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           + Y +++GL   +  +T  D A+L   +  +FP+YY YFS +   Y N    N N+LL +
Sbjct: 153 SHYVDSTGLPRPDHYSTPYDMAVLTRAIINDFPEYYHYFSQKWLTYNNIKQPNRNRLLWR 212

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
             + DG+KTG+T  +G+ ++ S +  +  +++VVMG PT  ER   +  L+         
Sbjct: 213 DGSADGLKTGHTEEAGYCLIASAKRNNMRLISVVMGAPTDSERADDSEALLNYGF----- 267

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLK 319
           +  QT +  + +++  KK + + K K
Sbjct: 268 RFYQTRQLFDANTSITKKRIWMGKRK 293


>gi|125972794|ref|YP_001036704.1| penicillin-binding protein 6 [Clostridium thermocellum ATCC 27405]
 gi|256004983|ref|ZP_05429955.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           DSM 2360]
 gi|125713019|gb|ABN51511.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Clostridium thermocellum ATCC 27405]
 gi|255991052|gb|EEU01162.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           DSM 2360]
 gi|316940970|gb|ADU75004.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           DSM 1313]
          Length = 384

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 149/306 (48%), Gaps = 3/306 (0%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
           R++ ++  I F  ++    A         S+I+I+ +  Q+   K  D P  PAS+TK+M
Sbjct: 8   RSVSVLAVITFFVMMFQVKAFAQFESSAQSAILIEASTGQVLYEKNADVPMPPASITKIM 67

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TL + FE L+   +  + ++ +S+ A     SK++L         + +  +   SAND  
Sbjct: 68  TLLLGFEALEKGLVKWDDEVIISEKAWRMEGSKMFLLVGDKAKFGEIMTGISVVSANDGC 127

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  E + GSE+ F  +M+ +AK++G+ NT + N++GL  +  + +ARD + L   L +N
Sbjct: 128 VALAEHLYGSEEAFVQVMNTRAKELGLTNTNFANSNGLPAEGHVMSARDISTLARYLIQN 187

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           +P+  +  S  ++ Y N    N N LL      DG+KTG+T  +G+ IV + +     ++
Sbjct: 188 YPKILELESTTEYTYNNIRQFNRNPLLGVFPGADGLKTGWTEEAGYCIVGTAQQNGQRMI 247

Query: 265 AVVMGMPTSQERDQKALELITSFLE--KKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTY 322
            VV+   + +ER +   EL+    +  K+          D++   + KK  +  KL    
Sbjct: 248 GVVLKTSSEKERSKAIQELLNYGFKNFKQVTVKNAGEIVDSIEVKNGKKLSVSLKLDSDI 307

Query: 323 SQFKKI 328
           S    +
Sbjct: 308 STVIPV 313


>gi|89092035|ref|ZP_01164990.1| D-ala-D-ala-carboxypeptidase [Oceanospirillum sp. MED92]
 gi|89083770|gb|EAR62987.1| D-ala-D-ala-carboxypeptidase [Oceanospirillum sp. MED92]
          Length = 387

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 83/276 (30%), Positives = 147/276 (53%), Gaps = 5/276 (1%)

Query: 21  SIYIQRNIQLMGKILFLSIIMI-SMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPR 75
           +++ + +      +L L  I + ++A  + A+P+ ++   +V+D +  ++   K  D+P 
Sbjct: 2   TMFNKVSKYFYALVLTLFAIQVHAVARLIPAEPQIAATAYLVMDADTGKVIASKNADKPF 61

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
            PASLTKMMT YI+   L    + L   + +S+ A     S+++++E T       +  +
Sbjct: 62  APASLTKMMTAYILEYELSKGNVGLEDLVLISEKAWRTQGSRMFIREGTQVRLGDLMKGI 121

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I +S ND S A  E I+GSE  FA LM+  A  +GM+NT + NA+GL      ++A D A
Sbjct: 122 IIQSGNDASVAVAEHIAGSEPAFADLMNQHADLLGMKNTNFLNATGLPADGHESSAADLA 181

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
            L   +  +FP  Y  +S + F Y +    N NKLL +   +DG+KTGYT  +G+ +V S
Sbjct: 182 TLAKAIINDFPDLYSIYSEKYFTYNDIRQPNRNKLLWRDKTVDGMKTGYTDAAGYCLVAS 241

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
            +     +++VV+G    + R +++ +L++      
Sbjct: 242 AKRDGMRLISVVLGTKDEEARARESQKLLSYAFRYY 277


>gi|16126400|ref|NP_420964.1| D-alanyl-D-alanine carboxypeptidase [Caulobacter crescentus CB15]
 gi|13423656|gb|AAK24132.1| D-alanyl-D-alanine carboxypeptidase [Caulobacter crescentus CB15]
          Length = 435

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 108/242 (44%), Positives = 157/242 (64%), Gaps = 1/242 (0%)

Query: 49  HAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS 107
            ++PKY++IVID N  ++   K  D PRYPAS+TK+MTLY+ FE L   +L L  QI +S
Sbjct: 42  ASEPKYAAIVIDANSGEVLYDKRGDSPRYPASITKVMTLYLTFEALSEGRLKLTDQIVMS 101

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
             AA Q P+K+ L+     T ++ I A+  +SANDV+TA  E ++GSE +FA LM+ + +
Sbjct: 102 PRAAAQAPTKIGLRPGESMTVDEAIKAMAVKSANDVATAVAERLAGSESRFAALMTLRGQ 161

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
           ++GM+NT + NASGL D  QI+TARD AIL     ++FPQYY YFS++ F +R   +  H
Sbjct: 162 ELGMRNTRFVNASGLPDSRQISTARDLAILSRATMRDFPQYYSYFSVKGFYFRGNYVKGH 221

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           N+LL+ M   DG+KTGYT  SGFN+  S       ++AVV+G P++  RD    +L+ + 
Sbjct: 222 NRLLDSMEGFDGLKTGYTNASGFNLAGSAVRDGRRLIAVVLGGPSTAWRDNNMEDLLLTG 281

Query: 288 LE 289
            +
Sbjct: 282 FD 283


>gi|254000240|ref|YP_003052303.1| beta-lactamase [Methylovorus sp. SIP3-4]
 gi|253986919|gb|ACT51776.1| Beta-lactamase [Methylovorus sp. SIP3-4]
          Length = 378

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 94/321 (29%), Positives = 168/321 (52%), Gaps = 20/321 (6%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASELHAKPK---YSSIVIDVNKNQMTGFKQ-DEPRYPA 78
           YI R   L+  +  L++     A+E+   P     S ++ D N       +  DE   PA
Sbjct: 3   YISRIFTLVATVCSLTV----QAAEIPPPPSLAVKSYVLRDFNSQSTIAQQAGDERVEPA 58

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           SLTK+MT Y+ F+ +++  L L   +P+S  A     SK++++     T ++ +  +I +
Sbjct: 59  SLTKLMTAYLSFKAVKNGHLQLTQTLPISIKAWKVEGSKMFVEPNRPVTVDELLHGMIIQ 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND S A  E I+ +E+ FA LM+ +A ++GM+NT + NA+GL D    TTA D ++L 
Sbjct: 119 SGNDASIALAEGIAITEEAFADLMNKEAARLGMKNTHFMNATGLPDPQHYTTAYDLSLLA 178

Query: 199 ILLRKNFPQ-YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
             L ++FP+ Y + +S +++ Y N    N N+LL     +DG+KTG+T+ +G+ +++S +
Sbjct: 179 SALIRDFPEDYKRLYSQKQYSYNNITQPNRNRLLWLDPYVDGMKTGHTKTAGYCLISSAK 238

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKK----TLKHQQ-------THRKDNLSS 306
             +  +++VV+G P+   R  ++ +L+    +        K  Q          +DNL +
Sbjct: 239 RGETRLISVVLGTPSDSARATESQKLLNYGFQFYESHLVYKRGQPINQLKVWKGQDNLVA 298

Query: 307 TSLKKSLMIKKLKRTYSQFKK 327
            ++   L I   K  Y++ K 
Sbjct: 299 ATVPTDLSITLPKGEYARVKA 319


>gi|330811926|ref|YP_004356388.1| cell division-related protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380034|gb|AEA71384.1| putative cell division-related protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 385

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 76/266 (28%), Positives = 135/266 (50%), Gaps = 7/266 (2%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQS 95
            ++ M+    +L AK   S +++D +  ++      D+   PASLTK+MT YI    ++ 
Sbjct: 23  FAVEMMPAPPQLAAK---SFVLMDASSGEVLVENNGDQRLPPASLTKLMTAYIATLEIRR 79

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
            ++  N  + VS+ A     S++++K  +  T    +  +I +S ND S A  E I+GSE
Sbjct: 80  GQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDASVALSEHIAGSE 139

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             FA +M+     +GM N+ + N +GL +    ++A D A+L   +    P +Y  +S +
Sbjct: 140 DAFADMMNKTVADLGMTNSHFMNPTGLPNPEHYSSAHDMALLARAIIHEDPAHYAIYSQK 199

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           +F +      N N LL +   +DG+KTG+T  +G+ +V+S       ++AVV G  +   
Sbjct: 200 EFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTSSEVA 259

Query: 276 RDQKALELIT---SFLEKKTLKHQQT 298
           R  +  +L+T    F E +T   + T
Sbjct: 260 RAAETQKLLTYGFRFFETQTFYQKGT 285


>gi|330953021|gb|EGH53281.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae Cit 7]
          Length = 386

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 80/284 (28%), Positives = 140/284 (49%), Gaps = 11/284 (3%)

Query: 23  YIQRNIQLMGKILFLSII----MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           + +R   L+  I+  +      M   A +L AK   + +++D     +      D+   P
Sbjct: 6   FAKRLCLLVPLIITPTGWAAEQMTPAAPQLAAK---AYVLMDATSGNVLVENNGDQRLAP 62

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT YI    ++  ++  N  + +S+ A     S++++K  +  T    +  +I 
Sbjct: 63  ASLTKLMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIII 122

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E I+GSE  FA +M+  A  +GM N+ + N +GL +    ++A D AIL
Sbjct: 123 QSGNDASVAISEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPNPEHYSSAHDMAIL 182

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              +    P +Y  +S ++F +      N N LL +   +DG+KTG+T  +G+ +V+S  
Sbjct: 183 ARAIIHEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAV 242

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQT 298
                ++AVV G  + Q R  +  +L+T    F E +    + T
Sbjct: 243 RDGMRLIAVVFGTNSEQARAAETQKLLTYGFRFFETQNFYQKGT 286


>gi|254483505|ref|ZP_05096732.1| D-alanyl-D-alanine carboxypeptidase family protein [marine gamma
           proteobacterium HTCC2148]
 gi|214036226|gb|EEB76906.1| D-alanyl-D-alanine carboxypeptidase family protein [marine gamma
           proteobacterium HTCC2148]
          Length = 387

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 82/267 (30%), Positives = 145/267 (54%), Gaps = 9/267 (3%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           +   L LSI     A+ + + P+ ++   +++D N  ++   K  D P  PASLTKMMT 
Sbjct: 6   LALFLALSIFGAQAATIVPSPPQIAAKAYLLVDANSGEILAEKNADMPLPPASLTKMMTS 65

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRSAN 141
           Y++   +   ++ L+  + VS+ A +QNP     S ++++     + +     ++  S N
Sbjct: 66  YVLATEIDEGRVALSDMVTVSENAWSQNPLFAGSSLMWIEPGKEVSIDDLQRGIVISSGN 125

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D + A  E ++GSE  FA +M++ A+K+GM +T Y N+ GL D + +TTARD A L   +
Sbjct: 126 DATVAVAEHLAGSEAVFAEMMNSHAEKLGMIDTYYVNSHGLPDPDHVTTARDLATLSKAM 185

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
               P++Y  +  R+F Y N    N N LL +   +DG+KTGYT+ +G+ +V S   +  
Sbjct: 186 IIEHPEHYAVYKEREFTYNNIKQYNRNSLLAEDPTVDGLKTGYTQEAGYCLVASAERRGM 245

Query: 262 PIVAVVMGMPTSQERDQKALELITSFL 288
            +++VV+G  +++ R  +   L+    
Sbjct: 246 RLISVVLGASSTRARKNETRSLLNYGF 272


>gi|170768996|ref|ZP_02903449.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii
           TW07627]
 gi|170122068|gb|EDS90999.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii
           TW07627]
          Length = 403

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 80/274 (29%), Positives = 137/274 (50%), Gaps = 11/274 (4%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLT 81
           R +     +LFL       A +    P     + I++D    ++      DE   PASLT
Sbjct: 12  RGLAAGSALLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLT 71

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILAL 135
           K+MT Y++ + L++ K+ L   + + K A        +  S ++LK     +       +
Sbjct: 72  KIMTSYVVGQALKADKIKLTDMVTIGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGV 131

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL    Q +TARD A
Sbjct: 132 IIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMA 191

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVT 254
           +LG  L  + P+ Y     ++F +      N N+LL   + N+DG+KTG T  +G+N+V 
Sbjct: 192 LLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVA 251

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 252 SATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 285


>gi|331682347|ref|ZP_08382966.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli H299]
 gi|331079978|gb|EGI51157.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli H299]
          Length = 403

 Score =  304 bits (780), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 137/276 (49%), Gaps = 11/276 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPAS 79
           + R +      LFL       A +    P     + I++D    ++      DE   PAS
Sbjct: 10  LLRGLAACSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPAS 69

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +      
Sbjct: 70  LTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNK 129

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL    Q +TARD
Sbjct: 130 GVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARD 189

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNI 252
            A+LG  L  + P+ Y     ++F +      N N+LL   + N+DG+KTG T  +G+N+
Sbjct: 190 MALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNL 249

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           V S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 250 VASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 285


>gi|324112725|gb|EGC06701.1| D-alanyl-D-alanine carboxypeptidase [Escherichia fergusonii B253]
 gi|325496781|gb|EGC94640.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia
           fergusonii ECD227]
          Length = 403

 Score =  304 bits (780), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 78/274 (28%), Positives = 137/274 (50%), Gaps = 11/274 (4%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLT 81
           R +     +LFL    +  A +    P     + I++D    ++      DE   PASLT
Sbjct: 12  RGLVAGSALLFLFAPTVQAAEQAIDAPSVDARAWILMDYASGKVLAEGNADEKLDPASLT 71

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILAL 135
           K+MT Y++ + L++ K+ L   + V + A        +  S ++LK     +       +
Sbjct: 72  KIMTSYVVGQALKADKIKLTDMVTVGRDAWATGNPALRGSSVMFLKPGDQVSVADLNKGV 131

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL    Q +TARD A
Sbjct: 132 IIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMA 191

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVT 254
           +L   L  + P+ Y     ++F +      N N+LL   + ++DG+KTG T  +G+N+V 
Sbjct: 192 LLSKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLHVDGLKTGTTAGAGYNLVA 251

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 252 SATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 285


>gi|16128807|ref|NP_415360.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89107690|ref|AP_001470.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K-12
           substr. W3110]
 gi|157160319|ref|YP_001457637.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           HS]
 gi|170020804|ref|YP_001725758.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           ATCC 8739]
 gi|170080498|ref|YP_001729818.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli str. K-12 substr. DH10B]
 gi|188494572|ref|ZP_03001842.1| penicillin-binding protein 6 [Escherichia coli 53638]
 gi|238900098|ref|YP_002925894.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli BW2952]
 gi|253774159|ref|YP_003036990.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160916|ref|YP_003044024.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli B
           str. REL606]
 gi|256023565|ref|ZP_05437430.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia sp.
           4_1_40B]
 gi|297518732|ref|ZP_06937118.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           OP50]
 gi|312970918|ref|ZP_07785097.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1827-70]
 gi|2506804|sp|P08506|DACC_ECOLI RecName: Full=D-alanyl-D-alanine carboxypeptidase dacC;
           Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
           Full=Penicillin-binding protein 6; Short=PBP-6; Flags:
           Precursor
 gi|1651381|dbj|BAA35542.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K12
           substr. W3110]
 gi|1787062|gb|AAC73926.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli str. K-12 substr. MG1655]
 gi|157065999|gb|ABV05254.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli HS]
 gi|169755732|gb|ACA78431.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli ATCC
           8739]
 gi|169888333|gb|ACB02040.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli str. K-12 substr. DH10B]
 gi|188489771|gb|EDU64874.1| penicillin-binding protein 6 [Escherichia coli 53638]
 gi|238860730|gb|ACR62728.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli BW2952]
 gi|242376630|emb|CAQ31340.1| penicillin-binding protein 6 [Escherichia coli BL21(DE3)]
 gi|253325203|gb|ACT29805.1| Beta-lactamase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972817|gb|ACT38488.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli B str. REL606]
 gi|253977037|gb|ACT42707.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli BL21(DE3)]
 gi|309701117|emb|CBJ00415.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase)
           [Escherichia coli ETEC H10407]
 gi|310336679|gb|EFQ01846.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1827-70]
 gi|315619844|gb|EFV00363.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 3431]
 gi|332342172|gb|AEE55506.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli UMNK88]
          Length = 400

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 137/276 (49%), Gaps = 11/276 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPAS 79
           + R +      LFL       A +    P     + I++D    ++      DE   PAS
Sbjct: 7   LLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPAS 66

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +      
Sbjct: 67  LTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNK 126

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL    Q +TARD
Sbjct: 127 GVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARD 186

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNI 252
            A+LG  L  + P+ Y     ++F +      N N+LL   + N+DG+KTG T  +G+N+
Sbjct: 187 MALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNL 246

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           V S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 247 VASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 282


>gi|29654563|ref|NP_820255.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii
           RSA 493]
 gi|154706869|ref|YP_001424698.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii
           Dugway 5J108-111]
 gi|161830325|ref|YP_001597113.1| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii RSA 331]
 gi|29541831|gb|AAO90769.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii
           RSA 493]
 gi|154356155|gb|ABS77617.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii
           Dugway 5J108-111]
 gi|161762192|gb|ABX77834.1| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii RSA 331]
          Length = 418

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 83/266 (31%), Positives = 143/266 (53%), Gaps = 6/266 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
             +++D +   +   K    R  PASLTK+MTLY+ F+ L+S ++HL+ +  VS  A   
Sbjct: 67  GYVLMDADSGIVIAQKNMTQRLQPASLTKLMTLYVTFQALKSAQIHLDDKAKVSVKAWRT 126

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++LKE         I  +I  S ND      ++I G+E  FA +M+  A ++GM+N
Sbjct: 127 GGSRMFLKEGAEVPVNLLIQGIIVASGNDACVTMAQYIGGTEPSFAQMMNQTAARLGMKN 186

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           + Y +++GL   +  +T  D A+L   +  +FP+YY YFS +   Y N    N N+LL +
Sbjct: 187 SHYVDSTGLPRPDHYSTPYDMAVLTRAIINDFPEYYHYFSQKWLTYNNIKQPNRNRLLWR 246

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
             + DG+KTG+T  +G+ ++ S +  +  +++VVMG PT  ER   +  L+         
Sbjct: 247 DGSADGLKTGHTEEAGYCLIASAKRNNMRLISVVMGAPTDSERADDSEALLNYGF----- 301

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLK 319
           +  QT +  + +++  KK + + K K
Sbjct: 302 RFYQTRQLFDANTSITKKRIWMGKRK 327


>gi|260450014|gb|ACX40436.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli DH1]
          Length = 400

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 137/276 (49%), Gaps = 11/276 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPAS 79
           + R +      LFL       A +    P     + I++D    ++      DE   PAS
Sbjct: 7   LLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPAS 66

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +      
Sbjct: 67  LTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNK 126

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL    Q +TARD
Sbjct: 127 GVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARD 186

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNI 252
            A+LG  L  + P+ Y     ++F +      N N+LL   + N+DG+KTG T  +G+N+
Sbjct: 187 MALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNL 246

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           V S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 247 VASATQGDMRLISVVLGAKTDRFRFNESEKLLTWGF 282


>gi|218548358|ref|YP_002382149.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia
           fergusonii ATCC 35469]
 gi|218355899|emb|CAQ88514.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia fergusonii ATCC 35469]
          Length = 400

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 77/274 (28%), Positives = 137/274 (50%), Gaps = 11/274 (4%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLT 81
           R +     +LFL    +  A +    P     + +++D    ++      DE   PASLT
Sbjct: 9   RGLVAGSALLFLFAPTVQAAEQAIDAPSVDARAWVLMDYASGKVLAEGNADEKLDPASLT 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILAL 135
           K+MT Y++ + L++ K+ L   + V + A        +  S ++LK     +       +
Sbjct: 69  KIMTSYVVGQALKADKIKLTDMVTVGRDAWATGNPALRGSSVMFLKPGDQVSVADLNKGV 128

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL    Q +TARD A
Sbjct: 129 IIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMA 188

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVT 254
           +L   L  + P+ Y     ++F +      N N+LL   + ++DG+KTG T  +G+N+V 
Sbjct: 189 LLSKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLHVDGLKTGTTAGAGYNLVA 248

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 249 SATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 282


>gi|212212357|ref|YP_002303293.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii
           CbuG_Q212]
 gi|212010767|gb|ACJ18148.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii
           CbuG_Q212]
          Length = 418

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 83/266 (31%), Positives = 143/266 (53%), Gaps = 6/266 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
             +++D +   +   K    R  PASLTK+MTLY+ F+ L+S ++HL+ +  VS  A   
Sbjct: 67  GYVLMDADSGIVIAQKNMTQRLQPASLTKLMTLYVTFQALKSAQIHLDDKAKVSIKAWRT 126

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++LKE         I  +I  S ND      ++I G+E  FA +M+  A ++GM+N
Sbjct: 127 GGSRMFLKEGAEVPVNLLIQGIIVASGNDACVTMAQYIGGTEPSFAQMMNQTAARLGMKN 186

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           + Y +++GL   +  +T  D A+L   +  +FP+YY YFS +   Y N    N N+LL +
Sbjct: 187 SHYVDSTGLPRPDHYSTPYDMAVLTRAIINDFPEYYHYFSQKWLTYNNIKQPNRNRLLWR 246

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
             + DG+KTG+T  +G+ ++ S +  +  +++VVMG PT  ER   +  L+         
Sbjct: 247 DGSADGLKTGHTEEAGYCLIASAKRNNMRLISVVMGAPTDSERADDSEALLNYGF----- 301

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLK 319
           +  QT +  + +++  KK + + K K
Sbjct: 302 RFYQTRQLFDANTSITKKRIWMGKRK 327


>gi|300929353|ref|ZP_07144826.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           187-1]
 gi|300947071|ref|ZP_07161292.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           116-1]
 gi|300957042|ref|ZP_07169288.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           175-1]
 gi|301646276|ref|ZP_07246167.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           146-1]
 gi|331641359|ref|ZP_08342494.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli H736]
 gi|300316182|gb|EFJ65966.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           175-1]
 gi|300453310|gb|EFK16930.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           116-1]
 gi|300462699|gb|EFK26192.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           187-1]
 gi|301075479|gb|EFK90285.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           146-1]
 gi|323938194|gb|EGB34454.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1520]
 gi|323942711|gb|EGB38876.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E482]
 gi|323962952|gb|EGB58524.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H489]
 gi|331038157|gb|EGI10377.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli H736]
          Length = 407

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 82/288 (28%), Positives = 140/288 (48%), Gaps = 11/288 (3%)

Query: 12  KTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTG 68
            T + +      + R +      LFL       A +    P     + I++D    ++  
Sbjct: 2   DTRVAFMTQYSSLLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLA 61

Query: 69  F-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLK 121
               DE   PASLTK+MT Y++ + L++ K+ L   + V K A        +  S ++LK
Sbjct: 62  EGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLK 121

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
                +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   G
Sbjct: 122 PGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHG 181

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGI 240
           L    Q +TARD A+LG  L  + P+ Y     ++F +      N N+LL   + N+DG+
Sbjct: 182 LDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGM 241

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 242 KTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 289


>gi|187730201|ref|YP_001880973.1| D-alanyl-D-alanine carboxypeptidase fraction C [Shigella boydii CDC
           3083-94]
 gi|187427193|gb|ACD06467.1| serine-type D-Ala-D-Ala carboxypeptidase [Shigella boydii CDC
           3083-94]
          Length = 400

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 137/276 (49%), Gaps = 11/276 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPAS 79
           + R +      LFL       A +    P     + I++D    ++      DE   PAS
Sbjct: 7   LLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPAS 66

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +      
Sbjct: 67  LTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNK 126

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL    Q +TARD
Sbjct: 127 GVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARD 186

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNI 252
            A+LG  L  + P+ Y     ++F +      N N+LL   + N+DG+KTG T  +G+N+
Sbjct: 187 MALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNL 246

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           V S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 247 VASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 282


>gi|15800591|ref|NP_286605.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           O157:H7 EDL933]
 gi|15830173|ref|NP_308946.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           O157:H7 str. Sakai]
 gi|110641041|ref|YP_668771.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           536]
 gi|157157612|ref|YP_001462035.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           E24377A]
 gi|195936884|ref|ZP_03082266.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           O157:H7 str. EC4024]
 gi|209918088|ref|YP_002292172.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           SE11]
 gi|215485925|ref|YP_002328356.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218553425|ref|YP_002386338.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           IAI1]
 gi|218688622|ref|YP_002396834.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           ED1a]
 gi|218694313|ref|YP_002401980.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           55989]
 gi|218699214|ref|YP_002406843.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           IAI39]
 gi|218704263|ref|YP_002411782.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           UMN026]
 gi|254792035|ref|YP_003076872.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           O157:H7 str. TW14359]
 gi|260843090|ref|YP_003220868.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O103:H2
           str. 12009]
 gi|260854131|ref|YP_003228022.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O26:H11
           str. 11368]
 gi|260867013|ref|YP_003233415.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O111:H-
           str. 11128]
 gi|261225489|ref|ZP_05939770.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|293433137|ref|ZP_06661565.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           B088]
 gi|306812759|ref|ZP_07446952.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           NC101]
 gi|307314524|ref|ZP_07594127.1| Beta-lactamase [Escherichia coli W]
 gi|312969138|ref|ZP_07783345.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 2362-75]
 gi|12513851|gb|AAG55215.1|AE005265_5 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6
           [Escherichia coli O157:H7 str. EDL933]
 gi|13360378|dbj|BAB34342.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6
           [Escherichia coli O157:H7 str. Sakai]
 gi|110342633|gb|ABG68870.1| penicillin-binding protein 6 precursor [Escherichia coli 536]
 gi|157079642|gb|ABV19350.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E24377A]
 gi|209775538|gb|ACI86081.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6
           [Escherichia coli]
 gi|209775540|gb|ACI86082.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6
           [Escherichia coli]
 gi|209775542|gb|ACI86083.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6
           [Escherichia coli]
 gi|209775544|gb|ACI86084.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6
           [Escherichia coli]
 gi|209775546|gb|ACI86085.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6
           [Escherichia coli]
 gi|209911347|dbj|BAG76421.1| penicillin-binding protein 6 [Escherichia coli SE11]
 gi|215263997|emb|CAS08338.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218351045|emb|CAU96749.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli 55989]
 gi|218360193|emb|CAQ97743.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli IAI1]
 gi|218369200|emb|CAR16955.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli IAI39]
 gi|218426186|emb|CAR07008.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli ED1a]
 gi|218431360|emb|CAR12238.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli UMN026]
 gi|222032568|emb|CAP75307.1| Penicillin-binding protein 6 [Escherichia coli LF82]
 gi|254591435|gb|ACT70796.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli O157:H7 str. TW14359]
 gi|257752780|dbj|BAI24282.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O26:H11
           str. 11368]
 gi|257758237|dbj|BAI29734.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O103:H2
           str. 12009]
 gi|257763369|dbj|BAI34864.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O111:H-
           str. 11128]
 gi|281177974|dbj|BAI54304.1| penicillin-binding protein 6 [Escherichia coli SE15]
 gi|284920692|emb|CBG33755.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase)
           [Escherichia coli 042]
 gi|291323956|gb|EFE63378.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           B088]
 gi|305853522|gb|EFM53961.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           NC101]
 gi|306905947|gb|EFN36469.1| Beta-lactamase [Escherichia coli W]
 gi|307552682|gb|ADN45457.1| penicillin-binding protein 6 precursor [Escherichia coli ABU 83972]
 gi|312286540|gb|EFR14453.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 2362-75]
 gi|312945356|gb|ADR26183.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315060077|gb|ADT74404.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli W]
 gi|320637705|gb|EFX07497.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           O157:H7 str. G5101]
 gi|320642829|gb|EFX12030.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           O157:H- str. 493-89]
 gi|320648286|gb|EFX16941.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           O157:H- str. H 2687]
 gi|320654123|gb|EFX22191.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320659747|gb|EFX27303.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320664217|gb|EFX31368.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323155789|gb|EFZ41958.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli EPECa14]
 gi|323159661|gb|EFZ45640.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli E128010]
 gi|323165770|gb|EFZ51556.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella sonnei 53G]
 gi|323172242|gb|EFZ57880.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli LT-68]
 gi|323175540|gb|EFZ61135.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1180]
 gi|323185244|gb|EFZ70609.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1357]
 gi|323191008|gb|EFZ76275.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli RN587/1]
 gi|323379365|gb|ADX51633.1| Beta-lactamase [Escherichia coli KO11]
 gi|327253626|gb|EGE65255.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli STEC_7v]
          Length = 400

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 137/276 (49%), Gaps = 11/276 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPAS 79
           + R +      LFL       A +    P     + I++D    ++      DE   PAS
Sbjct: 7   LLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPAS 66

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +      
Sbjct: 67  LTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNK 126

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL    Q +TARD
Sbjct: 127 GVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARD 186

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNI 252
            A+LG  L  + P+ Y     ++F +      N N+LL   + N+DG+KTG T  +G+N+
Sbjct: 187 MALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNL 246

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           V S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 247 VASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 282


>gi|194438401|ref|ZP_03070491.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1]
 gi|301027029|ref|ZP_07190410.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           196-1]
 gi|307137467|ref|ZP_07496823.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           H736]
 gi|194422625|gb|EDX38622.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1]
 gi|299879457|gb|EFI87668.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           196-1]
          Length = 403

 Score =  304 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 137/276 (49%), Gaps = 11/276 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPAS 79
           + R +      LFL       A +    P     + I++D    ++      DE   PAS
Sbjct: 10  LLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPAS 69

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +      
Sbjct: 70  LTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNK 129

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL    Q +TARD
Sbjct: 130 GVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARD 189

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNI 252
            A+LG  L  + P+ Y     ++F +      N N+LL   + N+DG+KTG T  +G+N+
Sbjct: 190 MALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNL 249

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           V S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 250 VASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 285


>gi|237798412|ref|ZP_04586873.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331021264|gb|EGI01321.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 386

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 80/284 (28%), Positives = 140/284 (49%), Gaps = 11/284 (3%)

Query: 23  YIQRNIQLMGKILFLSII----MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           + +R   L+  I+  +      M   A +L AK   + +++D     +      D+   P
Sbjct: 6   FAKRLCLLVPLIITPAAWAAEQMTPAAPQLAAK---AYVLMDATSGNVLVENNGDQRLAP 62

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT YI    ++  ++  N  + +S+ A     S++++K  +  T    +  +I 
Sbjct: 63  ASLTKLMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIII 122

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E I+GSE  FA +M+  A  +GM N+ + N +GL +    ++A D AIL
Sbjct: 123 QSGNDASVAISEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPNPEHYSSAHDMAIL 182

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              +    P +Y  +S ++F +      N N LL +   +DG+KTG+T  +G+ +V+S  
Sbjct: 183 ARAIIHEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAV 242

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQT 298
                ++AVV G  + Q R  +  +L+T    F E +    + T
Sbjct: 243 RDGMRLIAVVFGTNSEQARAAETQKLLTYGFRFYETQNFYQKGT 286


>gi|218557743|ref|YP_002390656.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           S88]
 gi|218364512|emb|CAR02194.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli S88]
 gi|294493575|gb|ADE92331.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli IHE3034]
 gi|307627752|gb|ADN72056.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           UM146]
          Length = 400

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 137/276 (49%), Gaps = 11/276 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPAS 79
           + R +      LFL       A +    P     + I++D    ++      DE   PAS
Sbjct: 7   LLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPAS 66

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +      
Sbjct: 67  LTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNK 126

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL    Q +TARD
Sbjct: 127 GVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARD 186

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNI 252
            A+LG  L  + P+ Y     ++F +      N N+LL   + N+DG+KTG T  +G+N+
Sbjct: 187 MALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNL 246

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           V S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 247 VASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 282


>gi|323976776|gb|EGB71864.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TW10509]
          Length = 407

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 82/288 (28%), Positives = 140/288 (48%), Gaps = 11/288 (3%)

Query: 12  KTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTG 68
            T + +      + R +      LFL       A +    P     + I++D    ++  
Sbjct: 2   DTRVAFMTQYSSLLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLA 61

Query: 69  F-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLK 121
               DE   PASLTK+MT Y++ + L++ K+ L   + V K A        +  S ++LK
Sbjct: 62  EGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLK 121

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
                +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   G
Sbjct: 122 PGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHG 181

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGI 240
           L    Q +TARD A+LG  L  + P+ Y     ++F +      N N+LL   + N+DG+
Sbjct: 182 LDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGM 241

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 242 KTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 289


>gi|315135488|dbj|BAJ42647.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           DH1]
          Length = 403

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 137/276 (49%), Gaps = 11/276 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPAS 79
           + R +      LFL       A +    P     + I++D    ++      DE   PAS
Sbjct: 10  LLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPAS 69

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +      
Sbjct: 70  LTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNK 129

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL    Q +TARD
Sbjct: 130 GVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARD 189

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNI 252
            A+LG  L  + P+ Y     ++F +      N N+LL   + N+DG+KTG T  +G+N+
Sbjct: 190 MALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNL 249

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           V S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 250 VASATQGDMRLISVVLGAKTDRFRFNESEKLLTWGF 285


>gi|26246814|ref|NP_752854.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           CFT073]
 gi|227884197|ref|ZP_04002002.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           83972]
 gi|261258542|ref|ZP_05951075.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           O157:H7 str. FRIK966]
 gi|293409214|ref|ZP_06652790.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           B354]
 gi|300817100|ref|ZP_07097319.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           107-1]
 gi|300823980|ref|ZP_07104102.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           119-7]
 gi|300895754|ref|ZP_07114347.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           198-1]
 gi|300907171|ref|ZP_07124834.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1]
 gi|300924447|ref|ZP_07140417.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           182-1]
 gi|300939883|ref|ZP_07154518.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1]
 gi|300991867|ref|ZP_07179692.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           200-1]
 gi|300993443|ref|ZP_07180385.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1]
 gi|301020649|ref|ZP_07184722.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1]
 gi|301051233|ref|ZP_07198062.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           185-1]
 gi|301303598|ref|ZP_07209720.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           124-1]
 gi|301325847|ref|ZP_07219280.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1]
 gi|309795413|ref|ZP_07689831.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           145-7]
 gi|331646058|ref|ZP_08347161.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli M605]
 gi|331651852|ref|ZP_08352871.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli M718]
 gi|331676578|ref|ZP_08377274.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli H591]
 gi|26107214|gb|AAN79397.1|AE016758_1 Penicillin-binding protein 6 precursor [Escherichia coli CFT073]
 gi|227838949|gb|EEJ49415.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           83972]
 gi|291469682|gb|EFF12166.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           B354]
 gi|300297140|gb|EFJ53525.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           185-1]
 gi|300305477|gb|EFJ59997.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           200-1]
 gi|300360328|gb|EFJ76198.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           198-1]
 gi|300398577|gb|EFJ82115.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1]
 gi|300401046|gb|EFJ84584.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1]
 gi|300406557|gb|EFJ90095.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1]
 gi|300419332|gb|EFK02643.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           182-1]
 gi|300455265|gb|EFK18758.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1]
 gi|300523491|gb|EFK44560.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           119-7]
 gi|300530452|gb|EFK51514.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           107-1]
 gi|300841097|gb|EFK68857.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           124-1]
 gi|300847361|gb|EFK75121.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1]
 gi|308121063|gb|EFO58325.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           145-7]
 gi|315257828|gb|EFU37796.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 85-1]
 gi|315292514|gb|EFU51866.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           153-1]
 gi|315299413|gb|EFU58665.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 16-3]
 gi|323947137|gb|EGB43148.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H120]
 gi|323967274|gb|EGB62697.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli M863]
 gi|323969597|gb|EGB64885.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TA007]
 gi|324009727|gb|EGB78946.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 57-2]
 gi|324013062|gb|EGB82281.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 60-1]
 gi|324015963|gb|EGB85182.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           117-3]
 gi|324116152|gb|EGC10075.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1167]
 gi|331044810|gb|EGI16937.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli M605]
 gi|331050130|gb|EGI22188.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli M718]
 gi|331075267|gb|EGI46565.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli H591]
          Length = 407

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 82/288 (28%), Positives = 140/288 (48%), Gaps = 11/288 (3%)

Query: 12  KTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTG 68
            T + +      + R +      LFL       A +    P     + I++D    ++  
Sbjct: 2   DTRVAFMTQYSSLLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLA 61

Query: 69  F-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLK 121
               DE   PASLTK+MT Y++ + L++ K+ L   + V K A        +  S ++LK
Sbjct: 62  EGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLK 121

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
                +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   G
Sbjct: 122 PGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHG 181

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGI 240
           L    Q +TARD A+LG  L  + P+ Y     ++F +      N N+LL   + N+DG+
Sbjct: 182 LDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGM 241

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 242 KTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 289


>gi|148554284|ref|YP_001261866.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingomonas wittichii
           RW1]
 gi|148499474|gb|ABQ67728.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingomonas wittichii
           RW1]
          Length = 326

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 102/329 (31%), Positives = 177/329 (53%), Gaps = 13/329 (3%)

Query: 18  PYGSIYIQRNIQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTG 68
             GS +  R +  +   L +S++ +  A    A          P++S++++D + N++  
Sbjct: 1   MTGSAF-ARWLACLALALPMSVMPLPWAVSTTAPAEAASPLGAPRFSAVLMDADTNEILY 59

Query: 69  FKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
            +Q    R+PAS+TK+MTLY++F+ L + +L L+ ++ +S  AA+Q PSKL L      +
Sbjct: 60  AEQPTAIRHPASITKVMTLYLVFDALDAGRLKLDDRVVMSPLAASQRPSKLGLGIGQSLS 119

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
               I  +  +SANDV+ A  E I G+E  FA +M+ KA+++GM+ T++ NASGL +   
Sbjct: 120 VADAISVVAVKSANDVAVALAEKIGGTEANFARMMTAKARQLGMRQTVFANASGLPNPGH 179

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRN 247
            T+A+D AIL   + +N P  Y  FS + F Y    + NHNKLL  +  +DGIKTG+T +
Sbjct: 180 FTSAQDIAILSAAMIRNHPARYHCFSEQSFSYGKLRMANHNKLLGNVPGVDGIKTGFTND 239

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSST 307
           SGF +  S       ++AVV+G P+  +RD+    L+ +      L+ +   R +++++ 
Sbjct: 240 SGFTLTASAVRNGHRLIAVVLGSPSGWQRDRDITSLLNAGF--TALEIRGAGRSEDMAAL 297

Query: 308 SLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
                  + +  R   Q   +  +   T+
Sbjct: 298 LSSSGFALNRSLRPLPQIAALQVEEGDTE 326


>gi|254418835|ref|ZP_05032559.1| beta-lactamase, putative [Brevundimonas sp. BAL3]
 gi|196185012|gb|EDX79988.1| beta-lactamase, putative [Brevundimonas sp. BAL3]
          Length = 493

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 109/279 (39%), Positives = 159/279 (56%), Gaps = 8/279 (2%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGF-KQDEPRYP 77
           +++R    +  +L LS+++ +    + A+     +Y++IVID    ++      D  RYP
Sbjct: 4   FLRRG---LFAVLALSLVLGANVRPIEAQSQENSRYAAIVIDAASGEVLFSRHADSRRYP 60

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTKMMTLY+ FE L   K+H +  + VS+ AA Q PSKL L      T +  + A   
Sbjct: 61  ASLTKMMTLYLTFEALSQGKVHADDVLTVSQQAAAQPPSKLGLGAGQTITLDDAMRATAV 120

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           RSAND++ A  E I GSE +FA LM+ KA+++GM  T Y  A+GL D  Q T+ARDQAIL
Sbjct: 121 RSANDMAVAIAEHIGGSESRFATLMTAKAQQLGMTQTRYFTANGLPDARQTTSARDQAIL 180

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              + ++FPQYYKYF +  + Y  R   N N LL   +  DG+KTGYT  SG+N+  S  
Sbjct: 181 ARAIMRDFPQYYKYFGLHDWAYNGRSYRNTNGLLPTGNGYDGMKTGYTNASGYNLAASAV 240

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQ 296
                ++ VV+G  +S  R+    EL+ +  E +  + Q
Sbjct: 241 RDGRRLITVVLGGRSSASRNAHVAELMDTGFEVERRRSQ 279


>gi|164685962|ref|ZP_01946170.2| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212218675|ref|YP_002305462.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii
           CbuK_Q154]
 gi|164601484|gb|EAX33225.2| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212012937|gb|ACJ20317.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii
           CbuK_Q154]
          Length = 418

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 6/266 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
             +++D +   +   K    R  PASLTK+MTLY+ F+ L+S ++HL+ +  VS  A   
Sbjct: 67  GYVLMDADSGIVIAQKNMTQRLQPASLTKLMTLYVTFQALKSAQIHLDDKAKVSVKAWRT 126

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++LKE         I  +I  S ND      ++I G+E  FA +M+  A ++GM+N
Sbjct: 127 GGSRMFLKEGAEVPVNLLIQGIIVASGNDACVTMAQYIGGTEPSFAQMMNQTAARLGMKN 186

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           + Y +++GL   +  +T  D A L   +  +FP+YY YFS +   Y N    N N+LL +
Sbjct: 187 SHYVDSTGLPRPDHYSTPYDMAALTRAIINDFPEYYHYFSQKWLTYNNIKQPNRNRLLWR 246

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
             + DG+KTG+T  +G+ ++ S +  +  +++VVMG PT  ER   +  L+         
Sbjct: 247 DGSADGLKTGHTEEAGYCLIASAKRNNMRLISVVMGAPTDSERADDSEALLNYGF----- 301

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLK 319
           +  QT +  + +++  KK + + K K
Sbjct: 302 RFYQTRQLFDANTSITKKRIWMGKRK 327


>gi|170681795|ref|YP_001742946.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           SMS-3-5]
 gi|187776239|ref|ZP_02801387.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4196]
 gi|188024947|ref|ZP_02775045.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4113]
 gi|189010000|ref|ZP_02804398.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4076]
 gi|189402327|ref|ZP_02781640.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4401]
 gi|189402936|ref|ZP_02792356.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4486]
 gi|189404286|ref|ZP_02788318.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4501]
 gi|189404921|ref|ZP_02812067.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC869]
 gi|189405883|ref|ZP_02824886.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC508]
 gi|191166209|ref|ZP_03028043.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A]
 gi|191173711|ref|ZP_03035234.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11]
 gi|193064478|ref|ZP_03045559.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22]
 gi|193069405|ref|ZP_03050360.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019]
 gi|194428152|ref|ZP_03060695.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B171]
 gi|208814959|ref|ZP_03256138.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4045]
 gi|208822498|ref|ZP_03262817.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4042]
 gi|209400303|ref|YP_002269508.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4115]
 gi|217324128|ref|ZP_03440212.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. TW14588]
 gi|291281838|ref|YP_003498656.1| Penicillin-binding protein 6 [Escherichia coli O55:H7 str. CB9615]
 gi|293404143|ref|ZP_06648137.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           FVEC1412]
 gi|293414116|ref|ZP_06656765.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           B185]
 gi|298379925|ref|ZP_06989530.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           FVEC1302]
 gi|331662200|ref|ZP_08363123.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli TA143]
 gi|331667211|ref|ZP_08368076.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli TA271]
 gi|170519513|gb|ACB17691.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli SMS-3-5]
 gi|187768212|gb|EDU32056.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4196]
 gi|188015679|gb|EDU53801.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4113]
 gi|189002710|gb|EDU71696.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4076]
 gi|189356271|gb|EDU74690.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4401]
 gi|189363476|gb|EDU81895.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4486]
 gi|189366544|gb|EDU84960.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4501]
 gi|189373161|gb|EDU91577.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC869]
 gi|189377784|gb|EDU96200.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC508]
 gi|190903818|gb|EDV63533.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A]
 gi|190905961|gb|EDV65577.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11]
 gi|192928940|gb|EDV82553.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22]
 gi|192957358|gb|EDV87806.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019]
 gi|194413712|gb|EDX29991.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B171]
 gi|208731607|gb|EDZ80295.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4045]
 gi|208737983|gb|EDZ85666.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4042]
 gi|209161703|gb|ACI39136.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4115]
 gi|217320349|gb|EEC28773.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. TW14588]
 gi|290761711|gb|ADD55672.1| Penicillin-binding protein 6 [Escherichia coli O55:H7 str. CB9615]
 gi|291428729|gb|EFF01754.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           FVEC1412]
 gi|291434174|gb|EFF07147.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           B185]
 gi|298279623|gb|EFI21131.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           FVEC1302]
 gi|320192682|gb|EFW67323.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320196666|gb|EFW71289.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli WV_060327]
 gi|320199030|gb|EFW73627.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli EC4100B]
 gi|326338272|gb|EGD62101.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           1125]
 gi|326346249|gb|EGD69987.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           1044]
 gi|330910581|gb|EGH39091.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli AA86]
 gi|331060622|gb|EGI32586.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli TA143]
 gi|331065567|gb|EGI37460.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli TA271]
          Length = 403

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 137/276 (49%), Gaps = 11/276 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPAS 79
           + R +      LFL       A +    P     + I++D    ++      DE   PAS
Sbjct: 10  LLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPAS 69

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +      
Sbjct: 70  LTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNK 129

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL    Q +TARD
Sbjct: 130 GVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARD 189

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNI 252
            A+LG  L  + P+ Y     ++F +      N N+LL   + N+DG+KTG T  +G+N+
Sbjct: 190 MALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNL 249

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           V S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 250 VASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 285


>gi|91209873|ref|YP_539859.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           UTI89]
 gi|117623019|ref|YP_851932.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           APEC O1]
 gi|237707198|ref|ZP_04537679.1| penicillin-binding protein 6 [Escherichia sp. 3_2_53FAA]
 gi|91071447|gb|ABE06328.1| penicillin-binding protein 6 precursor [Escherichia coli UTI89]
 gi|115512143|gb|ABJ00218.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
           [Escherichia coli APEC O1]
 gi|226898408|gb|EEH84667.1| penicillin-binding protein 6 [Escherichia sp. 3_2_53FAA]
 gi|315287329|gb|EFU46740.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           110-3]
 gi|323953500|gb|EGB49366.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H252]
 gi|323958128|gb|EGB53837.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H263]
          Length = 407

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 82/288 (28%), Positives = 140/288 (48%), Gaps = 11/288 (3%)

Query: 12  KTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTG 68
            T + +      + R +      LFL       A +    P     + I++D    ++  
Sbjct: 2   DTRVAFMTQYSSLLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLA 61

Query: 69  F-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLK 121
               DE   PASLTK+MT Y++ + L++ K+ L   + V K A        +  S ++LK
Sbjct: 62  EGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLK 121

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
                +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   G
Sbjct: 122 PGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHG 181

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGI 240
           L    Q +TARD A+LG  L  + P+ Y     ++F +      N N+LL   + N+DG+
Sbjct: 182 LDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGM 241

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 242 KTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 289


>gi|300916310|ref|ZP_07133057.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           115-1]
 gi|300416399|gb|EFJ99709.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           115-1]
          Length = 407

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 82/288 (28%), Positives = 140/288 (48%), Gaps = 11/288 (3%)

Query: 12  KTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTG 68
            T + +      + R +      LFL       A +    P     + I++D    ++  
Sbjct: 2   DTRVAFMTQYSSLLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLA 61

Query: 69  F-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLK 121
               DE   PASLTK+MT Y++ + L++ K+ L   + V K A        +  S ++LK
Sbjct: 62  EGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDIVTVGKDAWATGNPALRGSSVMFLK 121

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
                +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   G
Sbjct: 122 PGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHG 181

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGI 240
           L    Q +TARD A+LG  L  + P+ Y     ++F +      N N+LL   + N+DG+
Sbjct: 182 LDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGM 241

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 242 KTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 289


>gi|296537403|ref|ZP_06899250.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis
           ATCC 49957]
 gi|296262269|gb|EFH09047.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis
           ATCC 49957]
          Length = 375

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 72/236 (30%), Positives = 138/236 (58%), Gaps = 1/236 (0%)

Query: 56  SIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++++D +   +   K  DE   P+S++K+MT+Y++F+ L+  +L L+  +PVS+ A    
Sbjct: 32  ALLMDADTGAVLLEKSADERMPPSSMSKLMTMYVVFDLLKQGRLRLDQTLPVSERAWRMG 91

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            SK++++  +  + E     +I +S ND      E ISGSE++FA L++  A+K+G+ ++
Sbjct: 92  GSKMFVELGSAVSVENLARGVIIQSGNDACIVLAEGISGSEQQFAELLNEYARKLGLNDS 151

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            ++NA+G  D     TARD A L   L  +FPQY+ ++S R F++      N N LL ++
Sbjct: 152 TFRNATGWPDPEHRMTARDLATLARHLINDFPQYFAFYSERSFQWNGINQENRNPLLGRV 211

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              DG+KTG+T ++G+ +  +++  D  ++ VV G+ + + R +++  L+     +
Sbjct: 212 PGADGLKTGHTEDAGYGLTGTVKRGDRRLILVVNGLTSMRARGEESERLMEWGFRE 267


>gi|256821559|ref|YP_003145522.1| Serine-type D-Ala-D-Ala carboxypeptidase [Kangiella koreensis DSM
           16069]
 gi|256795098|gb|ACV25754.1| Serine-type D-Ala-D-Ala carboxypeptidase [Kangiella koreensis DSM
           16069]
          Length = 389

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 87/247 (35%), Positives = 138/247 (55%), Gaps = 7/247 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S +++D +  Q+      D+   PASLTKMMT YII + L    L ++ ++ VS+ A 
Sbjct: 38  ARSYLLMDYDTGQIIMENNADQKLPPASLTKMMTSYIIGDELHKGNLSMDDKVLVSENAW 97

Query: 112 TQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
            QNP     S ++++   Y   E     +I +S ND S A  E I+G+E  FA LM+  A
Sbjct: 98  AQNPKLKGGSLMFIEVNKYVRVEDLYRGIIIQSGNDASIAMAEHIAGTEGAFADLMNQYA 157

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
            K+GM++T ++N++G   +  +TTARD AIL   L ++FP+ YK ++ R+F Y      N
Sbjct: 158 AKLGMKDTHFENSTGWPAEGHVTTARDLAILARALIRDFPEDYKLYAEREFTYNGIKQAN 217

Query: 227 HNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N LL     N+DG+KTG+T  +G+ +V+S   +D  +++VVMG  +  ER  +  +L+ 
Sbjct: 218 RNGLLGDPTLNVDGLKTGHTEEAGYCLVSSAEKEDMRLISVVMGTDSEAERAAETRKLLN 277

Query: 286 SFLEKKT 292
                 T
Sbjct: 278 FGFRFYT 284


>gi|262041066|ref|ZP_06014285.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259041624|gb|EEW42676.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 400

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 81/282 (28%), Positives = 139/282 (49%), Gaps = 11/282 (3%)

Query: 18  PYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDE 73
                +  R +     +LFL    +  A +L   P     + I++D    ++      DE
Sbjct: 1   MMHDAFSLRGLAAGCALLFLVAPAVQAAEQLPDAPSIDARAWILMDYASGKVLSEGNADE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFT 127
              PASLTK+MT Y++ + +++ K+ L   + V + A        +  S ++LK     +
Sbjct: 61  KLDPASLTKIMTSYVVGQAIKAGKIKLTDMVTVGRDAWATGNPALRGSSVMFLKPGMQVS 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
            E     +I +S ND S A  ++++GS+  F  LM+  AKK+G+ NT +    GL    Q
Sbjct: 121 VEDLNKGVIIQSGNDASIAIADYVAGSQDAFVSLMNGYAKKMGLTNTTFMTVHGLDAPGQ 180

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTR 246
            +TARD A+L   +  + P+ Y     ++F +      N N+LL   + N DG+KTG T 
Sbjct: 181 FSTARDMALLTKAMIHDVPEEYAVHKEKEFTFNKIRQPNRNRLLWSSNLNADGVKTGTTA 240

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            +G+N+V+S    D  ++AVV+G  T + R  ++ +L+T   
Sbjct: 241 GAGYNLVSSATQGDMRLIAVVLGTKTDRIRFNESEKLLTWGF 282


>gi|41218|emb|CAA29775.1| unnamed protein product [Escherichia coli K-12]
          Length = 400

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 136/276 (49%), Gaps = 11/276 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPAS 79
           + R +      LFL       A +    P     + I++D    ++      DE   PAS
Sbjct: 7   LLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPAS 66

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +      
Sbjct: 67  LTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNK 126

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL    Q +TARD
Sbjct: 127 GVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARD 186

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNI 252
            A+LG  L  + P+ Y     ++F +      N N+LL   + N DG+KTG T  +G+N+
Sbjct: 187 MALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNEDGMKTGTTAGAGYNL 246

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           V S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 247 VASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 282


>gi|85058899|ref|YP_454601.1| D-alanyl-D-alanine carboxypeptidase [Sodalis glossinidius str.
           'morsitans']
 gi|84779419|dbj|BAE74196.1| D-alanyl-D-alanine carboxypeptidase [Sodalis glossinidius str.
           'morsitans']
          Length = 396

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 75/254 (29%), Positives = 133/254 (52%), Gaps = 11/254 (4%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
             A E++A+   + I++D    ++      D+   PASLTK+M+ Y+I + +++ K+H  
Sbjct: 32  PAAPEINAR---AYILMDYQSGKVLAEANADQRLDPASLTKIMSSYVIGQAMKAGKIHPT 88

Query: 102 TQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
            ++ + K A        +  S ++LK     T +     ++ +S ND S A  + ++GS+
Sbjct: 89  DKVTIGKDAWATGNPVLRGSSLMFLKPGEQVTVDDLNKGIVIQSGNDASIALADHVAGSQ 148

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             F  L++  A+ +G++NT +    GL  + Q +TARD AIL   L +N P  Y     +
Sbjct: 149 DAFVSLINQYAQALGLKNTHFLTVHGLDAEGQYSTARDMAILSQALIRNVPDEYALHKEK 208

Query: 216 KFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           +F Y      N N+LL   +  +DG+KTGYT  +G N+V S       +++VV+G PT  
Sbjct: 209 EFTYNKIKQPNRNRLLWSGNLTVDGVKTGYTSGAGHNLVASATDNGMRLISVVLGAPTDG 268

Query: 275 ERDQKALELITSFL 288
            R +++ +L+T   
Sbjct: 269 IRFRESEKLLTWGF 282


>gi|291616858|ref|YP_003519600.1| DacC [Pantoea ananatis LMG 20103]
 gi|291151888|gb|ADD76472.1| DacC [Pantoea ananatis LMG 20103]
 gi|327393284|dbj|BAK10706.1| penicillin-binding protein 6 precursor DacC [Pantoea ananatis
           AJ13355]
          Length = 400

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 84/321 (26%), Positives = 150/321 (46%), Gaps = 22/321 (6%)

Query: 29  QLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMM 84
           ++    L L   M   A +  A P     + I+ID    ++      D+   PASLTKMM
Sbjct: 12  RIAATSLLLVAPMAVFAEQAPAAPQIDAKAWILIDYASGKVLTESNADQRLDPASLTKMM 71

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITR 138
           T Y++ + ++S K+  +  + V + A        +  S ++LK        +    ++ +
Sbjct: 72  TSYVVGQAIKSGKIKPDDMVTVGQDAWATGNPKLRGSSLMFLKPGDRIPVHELNKGIVIQ 131

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND   A  ++++GS+  F  LM+N  K +G++NT +    GL    Q +TARD A++G
Sbjct: 132 SGNDACIALADYVAGSQDSFIGLMNNYVKALGLKNTHFMTVHGLDADGQYSTARDMALIG 191

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLR 257
             L ++ P+ Y     ++F + N    N N+LL   +  +DGIKTG+T  +G N+V S  
Sbjct: 192 QALIRDVPEEYALNKEKEFTFNNIRQMNRNRLLWSSNLKVDGIKTGHTSGAGNNLVASAT 251

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITS---FLEKKT--------LKHQQTHRKDNLSS 306
             D  +++VV+G  +   R +++ +L+T    F E  T         + +    + N  +
Sbjct: 252 EGDMRLISVVLGTASDAIRFRESEKLLTWGFRFFETVTPIKAGAPFAQQRVWFGEHNQVN 311

Query: 307 TSLKKSLMIKKLKRTYSQFKK 327
             ++K   +   K      K 
Sbjct: 312 LGVEKDAALTIPKGQMKNLKA 332


>gi|195941235|ref|ZP_03086617.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           O157:H7 str. EC4024]
          Length = 363

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 76/244 (31%), Positives = 128/244 (52%), Gaps = 8/244 (3%)

Query: 53  KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + I++D    ++      DE   PASLTK+MT Y++ + L++ K+ L+  + V K A 
Sbjct: 4   ARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLDDMVTVGKDAW 63

Query: 112 T------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
                  +  S ++LK     +       +I +S ND   A  ++++GS+  F  LM+  
Sbjct: 64  ATGNPALRGSSVMFLKPGDQVSVSDLNKGVIIQSGNDACIALADYVAGSQDSFIGLMNGY 123

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
           A+K+G+ NT +K   GL    Q +TARD A+LG  L  + P  Y     ++F + N    
Sbjct: 124 AQKLGLTNTTFKTVHGLDAPGQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQP 183

Query: 226 NHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N+LL   + N+DG+KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+
Sbjct: 184 NRNRLLWSSNVNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGTKTDRIRFNESEKLL 243

Query: 285 TSFL 288
           T   
Sbjct: 244 TWGF 247


>gi|332286510|ref|YP_004418421.1| putative penicillin-binding protein precursor [Pusillimonas sp.
           T7-7]
 gi|330430463|gb|AEC21797.1| putative penicillin-binding protein precursor [Pusillimonas sp.
           T7-7]
          Length = 418

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 81/256 (31%), Positives = 147/256 (57%), Gaps = 2/256 (0%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
              A    + + +DVN  Q+   +  DEP  PASLTK+M+ Y++F+ L++ +L L  ++P
Sbjct: 67  PAPALTARAWMTLDVNSGQIIAAQNLDEPVEPASLTKLMSAYVVFDALENNRLSLEQKVP 126

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           VS+ A     S++++K  +  + +  +  +I +S ND + A  E ++GSE  F  +M+ +
Sbjct: 127 VSEKAWKTEGSRMFIKVNSQVSVDDLLQGVIVQSGNDATVALAEAVAGSEDAFVTIMNEE 186

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
           A + G+++T ++N++GL     +TTARD   L   L  +FPQY  Y+S ++F Y N    
Sbjct: 187 AARQGLRDTHFENSTGLPGPTHLTTARDLGTLAKNLVTDFPQYLHYYSQKEFTYNNIKQN 246

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N N+LL     +DG+KTG+T+++G+ +VT+       +V+V++G  +   R + +L+L+ 
Sbjct: 247 NRNRLLWSDPTVDGLKTGHTQSAGYCLVTTALRDGRRVVSVIVGAASDAARTENSLKLLN 306

Query: 286 S-FLEKKTLKHQQTHR 300
             F    T+K     +
Sbjct: 307 WSFQNFDTIKLYDNTK 322


>gi|206576649|ref|YP_002239512.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae
           342]
 gi|290510585|ref|ZP_06549955.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55]
 gi|206565707|gb|ACI07483.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae
           342]
 gi|289777301|gb|EFD85299.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55]
          Length = 400

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 81/282 (28%), Positives = 139/282 (49%), Gaps = 11/282 (3%)

Query: 18  PYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDE 73
                +  R +     +LFL    +  A +L   P     + I++D    ++      DE
Sbjct: 1   MMHDAFSLRGLAAGCALLFLVAPAVQAAEQLPDAPSIDARAWILMDYASGKVLSEGNADE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFT 127
              PASLTK+MT Y++ + +++ K+ L   + V + A        +  S ++LK     +
Sbjct: 61  KLDPASLTKIMTSYVVGQAIKAGKIKLTDMVTVGRDAWATGNPALRGSSVMFLKPGMQVS 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
            E     +I +S ND S A  ++++GS+  F  LM+  AKK+G+ NT +    GL    Q
Sbjct: 121 VEDLNKGVIIQSGNDASIAIADYVAGSQDAFVSLMNGYAKKMGLTNTTFMTVHGLDAPGQ 180

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTR 246
            +TARD A+L   +  + P+ Y     ++F +      N N+LL   + N DG+KTG T 
Sbjct: 181 FSTARDMALLTKAMIHDVPEEYAVHKEKEFTFNKIRQPNRNRLLWSTNLNADGVKTGTTA 240

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            +G+N+V+S    D  ++AVV+G  T + R  ++ +L+T   
Sbjct: 241 GAGYNLVSSATQGDMRLIAVVLGTKTDRIRFNESEKLLTWGF 282


>gi|153873396|ref|ZP_02001993.1| D-alanyl-D-alanine carboxypeptidase [Beggiatoa sp. PS]
 gi|152070138|gb|EDN68007.1| D-alanyl-D-alanine carboxypeptidase [Beggiatoa sp. PS]
          Length = 393

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 92/308 (29%), Positives = 158/308 (51%), Gaps = 20/308 (6%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYL 93
           L L+ +++     + A+   + I+ D    ++   K  DE   PASLTK+MT Y++F+ L
Sbjct: 18  LTLASLLVPSPPPIAAR---AYILQDFYSGKVLMEKKADERLEPASLTKLMTAYLVFQKL 74

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           +  K+ L   + +S+ A     S++YL   T+   +  +  +I +S ND S A  E I G
Sbjct: 75  KIGKIKLTDPVKISQKAWKMGGSRMYLDPGTFVPVDLLLKGMIIQSGNDASVALAELIGG 134

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           +E+ FA LM+ +A+++G++NT Y N++GL D+   +TARD A +   L  +FP YY+++S
Sbjct: 135 TEQAFATLMNEQAQRLGLKNTHYVNSTGLPDEQHYSTARDSATIAQALIYDFPSYYRWYS 194

Query: 214 IRKFRYRNRIITNHNKLLNKMH-----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +F Y N   TN N+LL +        +DG+KTGYT  +G+ +V S   K+  +++VV+
Sbjct: 195 GSEFTYNNITQTNRNRLLRRKPPLKGMKVDGMKTGYTDAAGYCLVASAIRKNMRLISVVL 254

Query: 269 GMPTSQERDQKALELITSFLEK----------KTLKHQQTHRKDNLS-STSLKKSLMIKK 317
           G    + R + +  ++                + L  Q+    +       L + L I  
Sbjct: 255 GTKNEKARTEVSERMLDYGFRFFRTYPLYKALQPLDIQRVWYGNTTQLPLGLSRPLYITV 314

Query: 318 LKRTYSQF 325
            K  Y Q 
Sbjct: 315 PKGQYGQL 322


>gi|152969428|ref|YP_001334537.1| D-alanyl-D-alanine carboxypeptidase fraction C [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|330008401|ref|ZP_08306219.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3]
 gi|150954277|gb|ABR76307.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|328535160|gb|EGF61663.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3]
          Length = 400

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 81/282 (28%), Positives = 139/282 (49%), Gaps = 11/282 (3%)

Query: 18  PYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDE 73
                +  R +     +LFL    +  A +L   P     + I++D    ++      DE
Sbjct: 1   MMHDAFSLRGLAAGCALLFLVAPAVQAAEQLPDAPSIDARAWILMDYASGKVLSEGNADE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFT 127
              PASLTK+MT Y++ + +++ K+ L   + V + A        +  S ++LK     +
Sbjct: 61  KLDPASLTKIMTSYVVGQAIKAGKIKLTDMVTVGRDAWATGNPALRGSSVMFLKPGMQVS 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
            E     +I +S ND S A  ++++GS+  F  LM+  AKK+G+ NT +    GL    Q
Sbjct: 121 VEDLNKGVIIQSGNDASIAIADYVAGSQDAFVSLMNGYAKKMGLTNTTFMTVHGLDAPGQ 180

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTR 246
            +TARD A+L   +  + P+ Y     ++F +      N N+LL   + N DG+KTG T 
Sbjct: 181 FSTARDMALLTKAMIHDVPEEYAVHKEKEFTFNKIRQPNRNRLLWSSNLNADGVKTGTTA 240

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            +G+N+V+S    D  ++AVV+G  T + R  ++ +L+T   
Sbjct: 241 GAGYNLVSSATQGDMRLIAVVLGTKTDRIRFNESEKLLTWGF 282


>gi|256021090|ref|ZP_05434955.1| D-alanyl-D-alanine carboxypeptidase fraction C [Shigella sp. D9]
          Length = 400

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 137/276 (49%), Gaps = 11/276 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPAS 79
           + R +      LFL       A +    P     + I++D    ++      DE   PAS
Sbjct: 7   LLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPAS 66

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +      
Sbjct: 67  LTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNK 126

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL    Q +TARD
Sbjct: 127 GVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLINTTFQTVHGLDAPGQFSTARD 186

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNI 252
            A+LG  L  + P+ Y     ++F +      N N+LL   + N+DG+KTG T  +G+N+
Sbjct: 187 MALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNL 246

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           V S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 247 VASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 282


>gi|156934665|ref|YP_001438581.1| D-alanyl-D-alanine carboxypeptidase fraction C [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156532919|gb|ABU77745.1| hypothetical protein ESA_02500 [Cronobacter sakazakii ATCC BAA-894]
          Length = 410

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 84/286 (29%), Positives = 143/286 (50%), Gaps = 12/286 (4%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAK----PKYSSIVIDVNKNQMTGF- 69
           L   +     +R + L G  L +S+     A  +          + I++D +  ++    
Sbjct: 7   LMTSFSRSGARRVLALSGAFLLISLSTAHAADPIAPAAPDVDARAWILMDYHSGKVLAEG 66

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEK 123
             DE   PASLTK+MT Y++ + L++ K+HL+ ++ V K A        +  S ++LK  
Sbjct: 67  NADEKLDPASLTKLMTSYVVGQALKAGKIHLDDKVTVGKDAWATGNPALRGSSLMFLKPG 126

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
              +       +I +S ND S A  ++++GS+  F  LM+  AK++G+ NT +K   GL 
Sbjct: 127 DQVSVADLNKGVIIQSGNDASIAIADYVAGSQDAFVSLMNGYAKRLGLTNTTFKTVHGLD 186

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKT 242
              Q +TARD A+LG  L  + P  Y     ++F +      N N+LL     N+DG+KT
Sbjct: 187 APGQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNKIRQPNRNRLLWSSSMNVDGMKT 246

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           G T  +G+N+V S    D  +++VV+G  T   R +++ +L+T   
Sbjct: 247 GTTAGAGYNLVASATQGDMRLISVVLGAKTDGIRFRESEKLLTWGF 292


>gi|296103221|ref|YP_003613367.1| D-alanyl-D-alanine carboxypeptidase fraction C [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295057680|gb|ADF62418.1| D-alanyl-D-alanine carboxypeptidase fraction C [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 404

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 80/286 (27%), Positives = 142/286 (49%), Gaps = 12/286 (4%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMI----SMASELHAKPKYSSIVIDVNKNQMTGF- 69
           + +    +   R++     +LFL +  +      A E       + I++D +  ++    
Sbjct: 1   MAFMTRKMTSLRSLAAGSALLFLFVPTLYAAEQAAPEAPPVDARAWILMDYSSGKVLAEG 60

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEK 123
             DE   PASLTK+MT Y++ + L++ K+ L+  + + K A        +  S ++LK  
Sbjct: 61  NADEKLDPASLTKIMTSYVVGQALKAGKIKLDDMVTIGKDAWATGNPALRGSSVMFLKPG 120

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
              +       +I +S ND   A  ++++GS+  F  LM+  A+K+G+ NT +K   GL 
Sbjct: 121 DQVSVSDLNKGVIIQSGNDACIALADYVAGSQDSFIGLMNGYAQKLGLTNTTFKTVHGLD 180

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKT 242
              Q +TARD A+LG  L  + P  Y     ++F +      N N+LL   + N+DG+KT
Sbjct: 181 APGQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNKIRQPNRNRLLWSSNVNVDGMKT 240

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           G T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 241 GTTAGAGYNLVASATQGDMRLISVVLGTKTDRIRFNESEKLLTWGF 286


>gi|209964479|ref|YP_002297394.1| D-alanyl-D-alanine carboxypeptidase [Rhodospirillum centenum SW]
 gi|209957945|gb|ACI98581.1| D-alanyl-D-alanine carboxypeptidase [Rhodospirillum centenum SW]
          Length = 403

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 81/273 (29%), Positives = 147/273 (53%), Gaps = 2/273 (0%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-AS 79
           ++   R +  +  +  +  I+ + A+ +    +  +I+ID +   +   K  + R P +S
Sbjct: 24  AVDAARRLAAIAVLTLVGTILPAQAATIDTIARE-AILIDTSTGTVLFEKNADERTPTSS 82

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           ++K+MT+Y++F+ ++S +L L+  +PVS+ A     SK++++       E  I  +I +S
Sbjct: 83  MSKVMTMYMVFDRIRSGRLSLDDTLPVSENAWRMQGSKMWVELGNSIRVEDLIRGVIIQS 142

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND      E +SGSE  FA  M+ KA ++GM  + + NASG  D +  +TARD A L  
Sbjct: 143 GNDACIVLAEGLSGSEPAFAADMTRKAHEMGMTASNFMNASGWPDPDHYSTARDLATLAQ 202

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            L K+FP++  Y+S ++F Y      N N LL +   +DG+KTG+T ++G+ ++ +    
Sbjct: 203 RLIKDFPEFLHYYSEKEFTYHGIKQGNRNPLLYRNMGVDGLKTGHTESAGYGLIATGERD 262

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
              +V VV G+P  Q R  ++  L+     + T
Sbjct: 263 GRRLVLVVNGLPNMQARADESARLLEWGWREFT 295


>gi|271500864|ref|YP_003333889.1| beta-lactamase [Dickeya dadantii Ech586]
 gi|270344419|gb|ACZ77184.1| Beta-lactamase [Dickeya dadantii Ech586]
          Length = 402

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 80/287 (27%), Positives = 140/287 (48%), Gaps = 14/287 (4%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGF-KQDEPRYPASLT 81
           R I      + +++  +  A ++   P+  +   I+ID    ++      D    PASLT
Sbjct: 11  RRIVAAATGILMAVSPVLQAEQMPPPPQIDAKAFILIDYGSGRVLAESNADTRLDPASLT 70

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILAL 135
           K+M+ Y+I + ++  K+    ++ V K A        +  S ++LK     +       +
Sbjct: 71  KIMSSYVIGQAIKVGKITPEDKVTVGKDAWAGGNPTLRGSSLMFLKPGDQISVSDLNKGI 130

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + +S ND S A  ++++GS+  F  LM+  A  +G+ NT +    GL    Q +TARD A
Sbjct: 131 VIQSGNDASIALADYVAGSQNAFVSLMNQYAATLGLTNTHFLTVHGLDTPGQYSTARDMA 190

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVT 254
            L   L ++ P  Y   S ++F + N    N N+LL   +  +DG+KTGYT  +G ++V 
Sbjct: 191 RLTQALIRDVPSEYALHSEKEFTFNNIRQPNRNRLLWSSNLRVDGVKTGYTDGAGHSLVA 250

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITS---FLEKKTLKHQQT 298
           S    D  +++VV+G P+   R +++ +L+T    F E  TL    T
Sbjct: 251 SAVDGDMRLISVVLGAPSDTIRFRESEKLLTWGFRFFETATLIRSDT 297


>gi|261855867|ref|YP_003263150.1| beta-lactamase [Halothiobacillus neapolitanus c2]
 gi|261836336|gb|ACX96103.1| Beta-lactamase [Halothiobacillus neapolitanus c2]
          Length = 425

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 81/252 (32%), Positives = 139/252 (55%), Gaps = 5/252 (1%)

Query: 39  IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKK 97
            + +  A  L A+   S +++D N  Q+   K  DEP  PAS+TK+MT Y++F  L+S  
Sbjct: 68  AMPVPGAPVLSAR---SYVLLDANTGQIIVQKNADEPVPPASITKLMTSYLVFSALKSGN 124

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           +H++  + +SK A     SK++++     + +  ++ +I +S ND +TA  E++ G+E+ 
Sbjct: 125 IHMDDMVTISKKAWEMQGSKMFIEVGKQVSVKNLLMGMIVQSGNDAATALAEYVGGNEQS 184

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK-YFSIRK 216
           F  LM+  AKK+GM  T Y++ +G      + +ARD + L   L K+FP YY  +F  + 
Sbjct: 185 FVSLMNATAKKLGMTKTHYEDPTGWPADGHVMSARDISTLFNALVKHFPNYYHEFFRQKV 244

Query: 217 FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           F +      N  KLL + + +DG KTG+T  +GF + TS +     ++AVV+G  +   R
Sbjct: 245 FTWNGIKQYNREKLLFRDNWVDGGKTGHTEEAGFCLATSGQQNGMRLIAVVLGTESDDAR 304

Query: 277 DQKALELITSFL 288
           + +A  L+    
Sbjct: 305 NNEAEALLNYGF 316


>gi|288936359|ref|YP_003440418.1| beta-lactamase [Klebsiella variicola At-22]
 gi|288891068|gb|ADC59386.1| Beta-lactamase [Klebsiella variicola At-22]
          Length = 403

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 80/285 (28%), Positives = 140/285 (49%), Gaps = 11/285 (3%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-K 70
           +       +  R +     +LFL    +  A +L   P     + I++D    ++     
Sbjct: 1   MALMMHDAFSLRGLAAGCALLFLIAPAVQAAEQLPDAPSIDARAWILMDYASGKVLSEGN 60

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKT 124
            DE   PASLTK+MT Y++ + +++ K+ L   + V + A        +  S ++LK   
Sbjct: 61  ADEKLDPASLTKIMTSYVVGQAIKAGKIKLTDMVTVGRDAWATGNPALRGSSVMFLKPGM 120

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
             + E     +I +S ND S A  ++++G++  F  LM+  AKK+G+ NT +    GL  
Sbjct: 121 QVSVEDLNKGVIIQSGNDASIAIADYVAGNQDAFVSLMNGYAKKMGLTNTTFMTVHGLDA 180

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTG 243
             Q +TARD A+L   +  + P+ Y     ++F +      N N+LL   + N DG+KTG
Sbjct: 181 PGQFSTARDMALLTKAMIHDVPEEYAVHKEKEFTFNKIRQPNRNRLLWSTNLNADGVKTG 240

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            T  +G+N+V+S    D  ++AVV+G  T + R  ++ +L+T   
Sbjct: 241 TTAGAGYNLVSSATQGDMRLIAVVLGTKTDRIRFNESEKLLTWGF 285


>gi|325982907|ref|YP_004295309.1| beta-lactamase [Nitrosomonas sp. AL212]
 gi|325532426|gb|ADZ27147.1| Beta-lactamase [Nitrosomonas sp. AL212]
          Length = 373

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 82/276 (29%), Positives = 150/276 (54%), Gaps = 5/276 (1%)

Query: 42  ISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKK 97
           +S AS    +   ++   ++ D    Q+   +   E   PASLTK+MT Y++F  L+  +
Sbjct: 14  VSSASAQQQEIPVAAKAFMLSDYQTGQVLAGQNVHERIEPASLTKLMTAYVVFSALKQGQ 73

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           L LN    VS++A     S+++++     T ++ I  +I +S ND   A  E ++GSE  
Sbjct: 74  LALNQTAVVSESAWRMIGSRMFIEPNKQVTVDELIRGMIVQSGNDACIALAETVAGSEAN 133

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F I+M+ +AK++GMQNT + N +GL D    TTA D  +L   + ++FP +Y  +S++++
Sbjct: 134 FVIIMNKEAKRLGMQNTHFTNTTGLPDPGHYTTAHDLTLLATAIIRDFPDFYPLYSLKEY 193

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
            Y N    N N+LL    ++DG+KTG+T+ +G+ ++TS       +++V++G  ++  R 
Sbjct: 194 TYNNITQPNRNRLLWIDPHVDGMKTGWTKAAGYCLITSAIRDKRRLISVIIGAKSANARS 253

Query: 278 QKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSL 313
            ++  L+    +     H    + D+L++  L K  
Sbjct: 254 IESQRLLNYGFQFYDTLH-LYKKNDSLATIHLWKGT 288


>gi|332282314|ref|ZP_08394727.1| penicillin-binding protein 6 [Shigella sp. D9]
 gi|332104666|gb|EGJ08012.1| penicillin-binding protein 6 [Shigella sp. D9]
          Length = 407

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 82/288 (28%), Positives = 140/288 (48%), Gaps = 11/288 (3%)

Query: 12  KTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTG 68
            T + +      + R +      LFL       A +    P     + I++D    ++  
Sbjct: 2   DTRVAFMTQYSSLLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLA 61

Query: 69  F-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLK 121
               DE   PASLTK+MT Y++ + L++ K+ L   + V K A        +  S ++LK
Sbjct: 62  EGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLK 121

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
                +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   G
Sbjct: 122 PGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLINTTFQTVHG 181

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGI 240
           L    Q +TARD A+LG  L  + P+ Y     ++F +      N N+LL   + N+DG+
Sbjct: 182 LDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGM 241

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 242 KTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 289


>gi|163797884|ref|ZP_02191828.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium BAL199]
 gi|159176846|gb|EDP61414.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium BAL199]
          Length = 421

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 108/273 (39%), Positives = 166/273 (60%), Gaps = 3/273 (1%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDE-PRYPA 78
           + + R    +   + L ++ ++  S   A+   KY+++V+D +   +   +Q    R+PA
Sbjct: 1   MVMTRCSVRILATIVLGLLWLAAPSMGRAEVTAKYAALVLDADTGTILFERQAAAERHPA 60

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           SLTK+MTLY++F+ ++  K+ LN ++ VS  AA Q PSKL L+       +  ILAL+T+
Sbjct: 61  SLTKIMTLYMLFDAIEHGKISLNQRLKVSARAAGQAPSKLGLQPGDSIRAKDAILALVTK 120

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           SANDV+    E +  +E +FA LM+++A+++GM+NT ++NASGLH  NQI+TA D A+L 
Sbjct: 121 SANDVAVVVAEALGETEPRFARLMTDRARRLGMRNTTFRNASGLHHPNQISTAYDMAMLA 180

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
           + +R++FP+ Y YFS R F +  R   NHNKLL      DGIKTGY   SGFN+V S+  
Sbjct: 181 LAIRRDFPKEYAYFSTRSFSWGGREYGNHNKLLGHYEGTDGIKTGYIGASGFNLVASVER 240

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
               ++ VV G  +   RD+    L+TS  EK 
Sbjct: 241 NGRRLIGVVFGGRSGPLRDRHMKRLLTSGFEKA 273


>gi|320177827|gb|EFW52813.1| D-alanyl-D-alanine carboxypeptidase [Shigella boydii ATCC 9905]
 gi|332088903|gb|EGI94015.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella boydii 5216-82]
          Length = 400

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 83/276 (30%), Positives = 138/276 (50%), Gaps = 11/276 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPAS 79
           + R +      LFL       A +    P     + I++D    ++      DE   PAS
Sbjct: 7   LLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPAS 66

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA------ATQNPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++ + L++ K+ L   + V K A      A +  S ++LK     +      
Sbjct: 67  LTKIMTSYVVGQALKADKIKLTDMVTVGKDARATGNPALRGSSVMFLKPGDQVSVADLNK 126

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL    Q +TARD
Sbjct: 127 GVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARD 186

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNI 252
            A+LG  L  + P+ Y     ++F +      N N+LL   + N+DGIKTG T  +G+N+
Sbjct: 187 MALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGIKTGTTAGAGYNL 246

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           V S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 247 VASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 282


>gi|331656861|ref|ZP_08357823.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli TA206]
 gi|331055109|gb|EGI27118.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6)
           (PBP-6) [Escherichia coli TA206]
          Length = 392

 Score =  302 bits (773), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 81/272 (29%), Positives = 137/272 (50%), Gaps = 11/272 (4%)

Query: 28  IQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKM 83
           +Q +   LFL       A +    P     + I++D    ++      DE   PASLTK+
Sbjct: 3   LQRVLHFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 62

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALIT 137
           MT Y++ + L++ K+ L   + V K A        +  S ++LK     +       +I 
Sbjct: 63  MTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVII 122

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL    Q +TARD A+L
Sbjct: 123 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 182

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSL 256
           G  L  + P+ Y     ++F +      N N+LL   + N+DG+KTG T  +G+N+V S 
Sbjct: 183 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASA 242

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
              D  +++VV+G  T + R  ++ +L+T   
Sbjct: 243 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 274


>gi|332091086|gb|EGI96176.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae
           155-74]
          Length = 400

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 83/276 (30%), Positives = 138/276 (50%), Gaps = 11/276 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPAS 79
           + R +      LFL       A +    P     + I++D    ++      DE   PAS
Sbjct: 7   LLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPAS 66

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA------ATQNPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++ + L++ K+ L   + V K A      A +  S ++LK     +      
Sbjct: 67  LTKIMTSYVVGQALKADKIKLTDMVTVGKDARATGNPALRGSSVMFLKPGDQVSVADLNK 126

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL    Q +TARD
Sbjct: 127 GVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARD 186

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNI 252
            A+LG  L  + P+ Y     ++F +      N N+LL   + N+DGIKTG T  +G+N+
Sbjct: 187 MALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGIKTGTTAGAGYNL 246

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           V S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 247 VASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 282


>gi|114775714|ref|ZP_01451282.1| hypothetical protein SPV1_05278 [Mariprofundus ferrooxydans PV-1]
 gi|114553825|gb|EAU56206.1| hypothetical protein SPV1_05278 [Mariprofundus ferrooxydans PV-1]
          Length = 334

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 92/261 (35%), Positives = 134/261 (51%), Gaps = 7/261 (2%)

Query: 41  MISMASELHAKP------KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
           M+ +A    A P        +  +ID    Q+      DE   PASLTKMMTLY+ FE L
Sbjct: 22  MMPLAVHAAAWPESPRLDAKAWAMIDARSGQIIASHNADEQLPPASLTKMMTLYLAFEAL 81

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           +  +L L+T + VS+ A     S ++L  + + T  Q I  + T S ND   A  E + G
Sbjct: 82  KQGRLSLDTPVSVSQKAWKIGGSTMFLDPRMHPTVGQLIHGIATYSGNDACIALAEHMEG 141

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           SE  FA  M+ KA+++GM ++ + NA+G   +   ++A D AILG  L ++FP+ YK F 
Sbjct: 142 SESTFAERMNAKARELGMLHSHFVNATGFPTEGHYSSAGDMAILGAALWRDFPERYKLFD 201

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            R F Y  R   N N+LL  M   DGIKTG+T+ +G+ +V S    +   VA V G  + 
Sbjct: 202 ERDFTYDGRTQPNRNRLLWTMSEADGIKTGHTQEAGYCLVGSAEKANTRFVAAVFGTKSD 261

Query: 274 QERDQKALELITSFLEKKTLK 294
           + R Q+   L+         K
Sbjct: 262 RARAQETRTLLRFGFNHFVTK 282


>gi|254784818|ref|YP_003072246.1| penicillin-binding protein 6 [Teredinibacter turnerae T7901]
 gi|237684996|gb|ACR12260.1| penicillin-binding protein 6 [Teredinibacter turnerae T7901]
          Length = 390

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 86/291 (29%), Positives = 154/291 (52%), Gaps = 16/291 (5%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASE--LHAKPKYSS---IVIDVNKNQMTGFKQ-DEP 74
              + R   ++  +  L   M + AS+  + A P+ ++   ++ID +  ++      DE 
Sbjct: 2   RFSVARAALVLAHLFILVTPMAANASQVIIPAPPQLAATAYLLIDADTGKVIVEHNADEQ 61

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTE 129
             PASLTKMMT YI+ E + + +L     + VS  A  +       S ++L+ ++     
Sbjct: 62  LPPASLTKMMTSYIVSEEIYAGRLQETDLVRVSDDAWRRGGAKSGSSTMFLEARSEVPVI 121

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
             +  +I +S ND S A  + I+GSE+ FA +M+ +A+ +GM N+ ++NA+G   +  +T
Sbjct: 122 DMLRGVIIQSGNDASIALAQHIAGSEEAFAEIMNQQAQLLGMTNSHFRNATGWPAEGHLT 181

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
           TARD AIL   L  + P++Y  +S + F++      N NKLL   + +DGIKTG+T  +G
Sbjct: 182 TARDLAILAKALINDHPKHYALYSEKHFKHNGISQPNRNKLLFTDNTVDGIKTGHTEAAG 241

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + +V S +     +++VVMG  +   R  ++ +L+         ++ QTH+
Sbjct: 242 YCLVASAKRDGMRLISVVMGAKSENARAAESKKLLAYGF-----RYYQTHK 287


>gi|159184788|ref|NP_354511.2| penicillin-binding protein [Agrobacterium tumefaciens str. C58]
 gi|159140076|gb|AAK87296.2| penicillin-binding protein [Agrobacterium tumefaciens str. C58]
          Length = 499

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 122/292 (41%), Positives = 183/292 (62%), Gaps = 2/292 (0%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTL 86
           ++ +   L  + I  +      A PKY+ IVID    ++   +  +  RYPASLTKMMTL
Sbjct: 26  VRFVALTLAAAFIAATSVQTAKADPKYAGIVIDAKSGKVLYGEDPDGLRYPASLTKMMTL 85

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y+ FE L S ++ L++++ VS  AA + PSKL ++     T EQ ILAL+TRSAND++TA
Sbjct: 86  YLTFEALNSGRISLDSRVTVSANAAKEPPSKLGVRAGGSVTVEQAILALVTRSANDMATA 145

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
            GE + GSE +FA +M+ KA+ +GM  T Y+NA+GL +  Q+TTARDQA LGI LR++FP
Sbjct: 146 LGEHLGGSEDRFARMMTAKARALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQHFP 205

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           QYY YFS R F +  ++I NHN+L+  +  +DGIKTGYTR +G N+ TS +     IVAV
Sbjct: 206 QYYGYFSTRTFNFGKQVIGNHNRLVGTVKGVDGIKTGYTRAAGSNLATSAQLDGRSIVAV 265

Query: 267 VMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKL 318
           V+G  +S  RD    +L+ ++L + + +   ++      S  +++ + +   
Sbjct: 266 VLGGRSSAARDATMRKLVATYLPQAS-RGGNSNLIAQTRSGPVEEPVTVAAA 316


>gi|118602482|ref|YP_903697.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567421|gb|ABL02226.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 375

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 87/302 (28%), Positives = 167/302 (55%), Gaps = 7/302 (2%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASL 80
           + I+  + L+  ++  +  +I +  +       +  ++D N  ++    KQ + R PASL
Sbjct: 5   LIIKPLVILISSLVLNTQAVIFITPKAPKISTAAYSIVDYNSGKVIASSKQHDKRAPASL 64

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           TK+MT Y++F+++   ++ L  ++ +SK A     SK +++       E  +  +I +S 
Sbjct: 65  TKLMTAYVVFQFINDGRISLEDEVRISKKAWKTGGSKSFVEVGKSIKLETLLKGMIIQSG 124

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND + A  E I+G+E  F   M+  A+++GM N+ ++NASGL + NQ TTA D  +L I 
Sbjct: 125 NDSAVALAEHIAGTESTFTTYMNEYARQLGMNNSWFENASGLPNDNQYTTAADITLLAIA 184

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
             ++FP++Y+++S ++F Y      N NKLL   H +DG+KTG+T+ +G+N+V S +   
Sbjct: 185 TIRDFPKFYQWYSQKEFTYHGIKQRNRNKLLWSDHTVDGLKTGFTKKAGYNLVASAKRAG 244

Query: 261 DPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKK 317
             +++VV+G  +   R  +  +++     F E +T+K     +K+   +++ K +L +  
Sbjct: 245 MRLISVVLGSSSVNARTSQTQKILDYGFRFFETQTIKD---IKKEVPIASATKDTLKVGT 301

Query: 318 LK 319
            K
Sbjct: 302 SK 303


>gi|195970177|ref|NP_385517.2| hypothetical protein SMc00996 [Sinorhizobium meliloti 1021]
 gi|307309177|ref|ZP_07588848.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           BL225C]
 gi|187904171|emb|CAC45990.2| Penicillin-binding protein [Sinorhizobium meliloti 1021]
 gi|306900323|gb|EFN30939.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           BL225C]
          Length = 500

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 129/292 (44%), Positives = 183/292 (62%), Gaps = 12/292 (4%)

Query: 3   QQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMI-SMASELHAKPKYSSIVIDV 61
           Q      AK+ F  +           ++MG+I    +I + + ++   A  KY+ IV+D 
Sbjct: 10  QSVFFDLAKRPFGVFS----------EVMGRIFLAGLIAVLTFSAPAFANSKYAGIVVDA 59

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
              ++      D+ RYPASLTKMMTLY+ FE L++ ++  +T +P SK A+ + PSKL +
Sbjct: 60  KTGKVLYGEDADQLRYPASLTKMMTLYLTFEALEAGRISKSTPVPFSKKASAEPPSKLGV 119

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           +     T EQ IL+L+TRSAND +TA GE + GSE++FA +M+NKA+ +GM  T Y+NA 
Sbjct: 120 RAGRSITVEQAILSLVTRSANDAATALGELLGGSEQRFARMMTNKARALGMTRTTYRNAH 179

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI 240
           GL +  Q TTARDQA LGI LR++FPQYY YFS R FR+  + I NHN+LL  +  +DGI
Sbjct: 180 GLPNSEQRTTARDQARLGIALRQHFPQYYDYFSTRSFRFGKQTIGNHNRLLGNVRGVDGI 239

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           KTGYTR SGFN+VTS +     IVAVVMG  +   RD +  +L+  ++   +
Sbjct: 240 KTGYTRASGFNLVTSAQLDGRSIVAVVMGGTSGGARDAQMRKLVAKYMPSAS 291


>gi|288549405|ref|ZP_06390668.1| hypothetical protein ENTCAN_05367 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318989|gb|EFC57927.1| D-alanyl-D-alanine carboxypeptidase DacA [Enterobacter cancerogenus
           ATCC 35316]
          Length = 408

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 81/289 (28%), Positives = 141/289 (48%), Gaps = 12/289 (4%)

Query: 12  KTFLTYPYGSIYIQRNIQLMGKILFLSIIMI----SMASELHAKPKYSSIVIDVNKNQMT 67
            T + +        R++     +LFL    +      A E       + I++D    ++ 
Sbjct: 2   DTRVAFMTLKTSSLRSLAAGSALLFLFAPTLYAAEQAAPEAPPVDARAWILMDYASGKVL 61

Query: 68  GF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYL 120
                DE   PASLTK+MT Y++ + L++ K+ L+  + V K A        +  S ++L
Sbjct: 62  AEGNADEKLDPASLTKLMTSYVVGQALKAGKIKLDDMVTVGKDAWATGNPALRGSSVMFL 121

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           K     +       +I +S ND   A  ++++GS+  F  LM+  A+++G+ NT +K   
Sbjct: 122 KPGDRVSVSDLNKGVIIQSGNDACIALADYVAGSQDSFIGLMNGYAQRLGLTNTTFKTVH 181

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
           GL    Q +TARD A+LG  L  + P+ Y     ++F +      N N+LL   + N+DG
Sbjct: 182 GLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNVNVDG 241

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 242 MKTGTTAGAGYNLVASATQGDMRLISVVLGTKTDRIRFNESEKLLTWGF 290


>gi|307321507|ref|ZP_07600902.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           AK83]
 gi|306892814|gb|EFN23605.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           AK83]
          Length = 500

 Score =  301 bits (772), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 129/292 (44%), Positives = 183/292 (62%), Gaps = 12/292 (4%)

Query: 3   QQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMI-SMASELHAKPKYSSIVIDV 61
           Q      AK+ F  +           ++MG+I    +I + + ++   A  KY+ IV+D 
Sbjct: 10  QSVFFDLAKRPFGVFS----------EVMGRIFLAGLIAVLTFSAPAFANSKYAGIVVDA 59

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
              ++      D+ RYPASLTKMMTLY+ FE L++ ++  +T +P SK A+ + PSKL +
Sbjct: 60  KTGKVLYGEDADQLRYPASLTKMMTLYLTFEALEAGRISKSTPVPFSKKASAEPPSKLGV 119

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           +     T EQ IL+L+TRSAND +TA GE + GSE++FA +M+NKA+ +GM  T Y+NA 
Sbjct: 120 RAGRSITVEQAILSLVTRSANDAATALGELLGGSEQRFARMMTNKARALGMTRTTYRNAH 179

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI 240
           GL +  Q TTARDQA LGI LR++FPQYY YFS R FR+  + I NHN+LL  +  +DGI
Sbjct: 180 GLPNSEQRTTARDQARLGIALRQHFPQYYDYFSTRSFRFGKQTIGNHNRLLGNVRGVDGI 239

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           KTGYTR SGFN+VTS +     IVAVVMG  +   RD +  +L+  ++   +
Sbjct: 240 KTGYTRASGFNLVTSAQLDGRSIVAVVMGGTSGGARDAQMRKLVAKYMPSAS 291


>gi|331005765|ref|ZP_08329124.1| D-alanyl-D-alanine carboxypeptidase [gamma proteobacterium
           IMCC1989]
 gi|330420402|gb|EGG94709.1| D-alanyl-D-alanine carboxypeptidase [gamma proteobacterium
           IMCC1989]
          Length = 386

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 91/293 (31%), Positives = 160/293 (54%), Gaps = 11/293 (3%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASE--LHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRY 76
           ++ R++     IL  S++M+S A    + A P+ ++    ++D N  ++   K  D    
Sbjct: 3   FLARSVLF---ILSCSVVMLSYARPVIIPAPPQLAATAYFLMDTNTGRVLVEKNADMQLP 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TKMMT YI+   ++   ++ +  + +S  A  +  SK++++E T  + +  +  +I
Sbjct: 60  PASMTKMMTSYIVSSEIERGSINPDDLVTISVKAWKKGGSKMFVREGTQVSIKDLLRGVI 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E I+GSE  FA +M+ +A  +GM NT++KNA+G      I++ RD AI
Sbjct: 120 IQSGNDASIALAEHIAGSEAAFADIMNQQAALLGMTNTVFKNATGWPADGHISSVRDLAI 179

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           LG  L K+FP++YK +S + F Y      N NKLL    ++DGIKTG+T  +GF +  S 
Sbjct: 180 LGQALIKDFPEHYKLYSEKYFTYNGINQPNRNKLLFTDKSVDGIKTGHTEEAGFGLTASS 239

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSL 309
                 +V+VV G  +   R  ++ +L++           + + K ++ +T++
Sbjct: 240 ERDGMRLVSVVTGTRSESARAAESQKLLSYGFRYY--YTHKLYSKGDVVNTAV 290


>gi|197284323|ref|YP_002150195.1| D-alanyl-D-alanine carboxypeptidase fraction A [Proteus mirabilis
           HI4320]
 gi|227358533|ref|ZP_03842858.1| D-alanyl-D-alanine carboxypeptidase fraction A [Proteus mirabilis
           ATCC 29906]
 gi|194681810|emb|CAR41057.1| putative penicillin-binding protein [Proteus mirabilis HI4320]
 gi|227161244|gb|EEI46318.1| D-alanyl-D-alanine carboxypeptidase fraction A [Proteus mirabilis
           ATCC 29906]
          Length = 403

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 89/298 (29%), Positives = 155/298 (52%), Gaps = 17/298 (5%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASE-----LHAKP---KYSSIVIDVNKNQMTGFKQ- 71
            + + R        + L+I   ++A +     + A P     S I+ID N  ++   K  
Sbjct: 6   PVKLLRTRLFSATFILLAISHHAIADDTLKTMIPAVPNIEAESYILIDYNSGKVLAEKNA 65

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTY 125
           D  R PASLTKMMT Y+I + +++ K+  N  +P+ + A        +  S ++LK    
Sbjct: 66  DVRRDPASLTKMMTSYVIGQAIRAGKISNNDIVPIGEEAWATGNPVFRGSSLMFLKPGDK 125

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            T  Q    +  +S ND   A   +++GS+  F  +M++  K++G+QNT ++   GL   
Sbjct: 126 VTVSQLTRGINLQSGNDACVAMASYVAGSQDTFVTMMNDYVKRLGLQNTQFQTVHGLDAP 185

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGY 244
            Q ++ARD A++G  L ++ P+ Y  +  ++F Y N   TN N LL     N+DGIKTG+
Sbjct: 186 GQYSSARDMALIGAALIRDVPEEYAIYKEKEFTYNNIRQTNRNGLLWDTSLNVDGIKTGH 245

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE-KKTLKHQQTHRK 301
           T  +G+N+V S    +  +++ VMG  +S+ RD ++ +L+T      +T+K  Q  ++
Sbjct: 246 TEAAGYNLVASATEGNMRLISAVMGGHSSKGRDAESKKLLTWGFRFFETVKPLQVGKE 303


>gi|295694696|ref|YP_003587934.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM
           2912]
 gi|295410298|gb|ADG04790.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM
           2912]
          Length = 405

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 84/256 (32%), Positives = 130/256 (50%), Gaps = 6/256 (2%)

Query: 43  SMASELHAKP---KYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +      A P     S++++D    Q+   K  D+ RYPAS+TKMMTLY+ FE +   K 
Sbjct: 33  AAGVAWPAPPHLTAPSAVLMDAATGQILYEKGADDKRYPASMTKMMTLYLTFEAIHDGKA 92

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
           HL+  +P+S+ A     S++YL  +  FT +  I  +   SAND + A  E++ GS  +F
Sbjct: 93  HLDDIVPISQNAYNTGGSEVYLDPREKFTLKDMITFVAVHSANDAAVAIAEYVGGSVGQF 152

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
              M+ KA+++G+  T + N  GLHD N  TTA D AIL   L   +P+   Y  I    
Sbjct: 153 VKRMNEKAQELGLTQTHFVNPDGLHDPNHYTTAMDMAILARDLITKYPEVLDYTKIHDMW 212

Query: 219 YRNRIIT--NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
            RN        N LL K   +DG+KTG+T  +G+ +  + +     +++V+M  P  Q R
Sbjct: 213 IRNHTFNVSATNNLLGKYPGMDGLKTGFTDQAGYCLTATAQQGGVRLISVIMKDPDDQSR 272

Query: 277 DQKALELITSFLEKKT 292
            +    L+    +  T
Sbjct: 273 QKDTTALLDYGFKNFT 288


>gi|194433152|ref|ZP_03065434.1| serine-type D-Ala-D-Ala carboxypeptidase [Shigella dysenteriae
           1012]
 gi|194418649|gb|EDX34736.1| serine-type D-Ala-D-Ala carboxypeptidase [Shigella dysenteriae
           1012]
          Length = 403

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 83/276 (30%), Positives = 138/276 (50%), Gaps = 11/276 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPAS 79
           + R +      LFL       A +    P     + I++D    ++      DE   PAS
Sbjct: 10  LLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPAS 69

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA------ATQNPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++ + L++ K+ L   + V K A      A +  S ++LK     +      
Sbjct: 70  LTKIMTSYVVGQALKADKIKLTDMVTVGKDARATGNPALRGSSVMFLKPGDQVSVADLNK 129

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL    Q +TARD
Sbjct: 130 GVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARD 189

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNI 252
            A+LG  L  + P+ Y     ++F +      N N+LL   + N+DGIKTG T  +G+N+
Sbjct: 190 MALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGIKTGTTAGAGYNL 249

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           V S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 250 VASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 285


>gi|83648479|ref|YP_436914.1| D-alanyl-D-alanine carboxypeptidase [Hahella chejuensis KCTC 2396]
 gi|83636522|gb|ABC32489.1| D-alanyl-D-alanine carboxypeptidase [Hahella chejuensis KCTC 2396]
          Length = 386

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 83/274 (30%), Positives = 140/274 (51%), Gaps = 4/274 (1%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPR-Y 76
           S+   R          +       AS + + P+ ++   I++D     +   K  E R  
Sbjct: 2   SLPRMRVYIAFFLCWAVGAAWADQASLIPSAPQIAASSYILMDAESGAIIVEKNSEERLP 61

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTKMMT Y++   +    +  N + P+S  A     SK++++E T       +  +I
Sbjct: 62  PASLTKMMTSYVLDYEVDQGNVSFNDEAPISVKAWKTGGSKMFVREGTSVRLGDLLKGII 121

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  EF++GSE  FA +M+  A+++GM NT + NA+GL  +N  ++A D A 
Sbjct: 122 IQSGNDASVAVAEFLAGSEDAFASMMNQHAQRLGMSNTNFANATGLPSENHYSSAHDLAK 181

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   +  +FP  Y  +S + F Y N    N N LL +  ++DG+KTG+T  +G+ +V+S 
Sbjct: 182 LAKAIINDFPNQYPLYSEKYFTYNNIRQPNRNLLLWRDKSVDGLKTGHTEEAGYCLVSSA 241

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                 +++VVMG  + + R ++ L+L+      
Sbjct: 242 VRDGMRLISVVMGAKSEEARARETLKLLNYGFRY 275


>gi|254281581|ref|ZP_04956549.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [gamma proteobacterium NOR51-B]
 gi|219677784|gb|EED34133.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [gamma proteobacterium NOR51-B]
          Length = 381

 Score =  301 bits (772), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 89/289 (30%), Positives = 150/289 (51%), Gaps = 10/289 (3%)

Query: 34  ILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
           IL +    +  +S + A P  ++   +++D +  ++      D+   PASLTKMMT YI+
Sbjct: 6   ILMMFSTSVLASSVVPAPPSIAADGYLLMDFHSGEVLVEHNADDVLPPASLTKMMTAYIL 65

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVS 144
            E + + +L L+ ++PVS+TA +QNP     S ++++     T  +    ++  S ND +
Sbjct: 66  AEEIDAGRLSLSDEVPVSRTAWSQNPTFRGSSLMWIEPGKTVTVGELEKGIVISSGNDAT 125

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  E I+GSE+ FA +M+  A+ +GM  T Y N+ GL +   +T+ARD A L   + ++
Sbjct: 126 VAIAEHIAGSEEAFAGMMNRYAEILGMTATHYVNSHGLPNSAHVTSARDLATLAAAIIRD 185

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
            P+ YK +    F Y +    N N LL    ++DG+KTGYT  +G+ +V S       ++
Sbjct: 186 HPERYKVYKQLSFTYNDITQYNRNHLLRDDPSVDGLKTGYTSVAGYGLVASAERDGMRLI 245

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSL 313
           +VVMG  +++ R  +   L+           Q       L+ST L K L
Sbjct: 246 SVVMGSNSTRSRKAETRSLLNYGFRFYETV-QPVVANVALASTRLWKGL 293


>gi|325292859|ref|YP_004278723.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3]
 gi|325060712|gb|ADY64403.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3]
          Length = 480

 Score =  301 bits (772), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 123/266 (46%), Positives = 176/266 (66%), Gaps = 1/266 (0%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTL 86
           ++ +   L  + I  +      A PKY+ IVID    ++   +  +  RYPASLTKMMTL
Sbjct: 2   VRFVALTLAAAFITATSVGTAQADPKYAGIVIDAKTGKVLYGEDPDGLRYPASLTKMMTL 61

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y+ FE L S ++ L++++PVS  AA + PSKL ++     T EQ ILAL+TRSAND++TA
Sbjct: 62  YLTFEALNSGRISLDSKVPVSANAAKEPPSKLGVRAGGSITVEQAILALVTRSANDMATA 121

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
            GE+I GSE +FA +M+ KA+ +GM  T Y+NA+GL +  Q+TTARDQA LGI LR++FP
Sbjct: 122 LGEYIGGSEDRFARMMTAKARALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQHFP 181

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           QYY YFS R F +  ++I NHN+L+  +  +DGIKTGYTR +G N+ TS +     IVAV
Sbjct: 182 QYYGYFSTRTFNFGKQVIGNHNRLVGTVRGVDGIKTGYTRAAGSNLATSAQLDGRSIVAV 241

Query: 267 VMGMPTSQERDQKALELITSFLEKKT 292
           V+G  +S  RD    +L+ ++L + +
Sbjct: 242 VLGGRSSAARDATMRKLVATYLPQAS 267


>gi|82776165|ref|YP_402512.1| D-alanyl-D-alanine carboxypeptidase fraction C [Shigella
           dysenteriae Sd197]
 gi|81240313|gb|ABB61023.1| D-alanyl-D-alanine carboxypeptidase [Shigella dysenteriae Sd197]
          Length = 400

 Score =  301 bits (771), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 80/276 (28%), Positives = 136/276 (49%), Gaps = 11/276 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPAS 79
           + R +      LFL       A +    P     + I++D    ++      DE   PAS
Sbjct: 7   LLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPAS 66

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA------TQNPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +      
Sbjct: 67  LTKIMTSYVVGQALKADKIKLTDMVTVGKDAWVTGNPALRGSSVMFLKPGDQVSVADLNK 126

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL    Q +TARD
Sbjct: 127 GVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARD 186

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNI 252
            A+LG  L  + P+ Y     ++F +      N N+LL   + N+DG+KTG T  +G+N+
Sbjct: 187 MALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNL 246

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           V S    D  +++VV+G  T + R  ++ +L+    
Sbjct: 247 VASATQGDMRLISVVLGAKTDRIRFNESEKLLAWGF 282


>gi|159043222|ref|YP_001532016.1| D-alanyl-D-alanine carboxypeptidase [Dinoroseobacter shibae DFL 12]
 gi|157910982|gb|ABV92415.1| D-alanyl-D-alanine carboxypeptidase [Dinoroseobacter shibae DFL 12]
          Length = 493

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 109/310 (35%), Positives = 168/310 (54%), Gaps = 10/310 (3%)

Query: 36  FLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIF 90
            ++I+ + +  ++ A+P     Y+++VID    ++   +  D   +PASLTKMMTLYI F
Sbjct: 11  IIAIVCVCLGMQISAQPVQAAPYAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYIAF 70

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           E ++  ++ L+T++ +SK AA + PSKL L+          I A   RSAND +TA GE 
Sbjct: 71  EAVRMGEIGLDTKVRISKKAAAEPPSKLGLRPGQQIALRYLIRASAVRSANDAATAIGEA 130

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           ISGSE  FA  M+  AK +GM +T +KNA GL +   ++TARD   LG  L  ++P+YY 
Sbjct: 131 ISGSEAAFARRMNRTAKALGMNSTTFKNAHGLTESGHLSTARDMTTLGRHLFYDYPEYYN 190

Query: 211 YFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            FS R        + N N +LLN     DGIKTGYTR +GFN+V S     + I+A V G
Sbjct: 191 LFSRRSTDTTMGTVANTNRRLLNAYRGADGIKTGYTRAAGFNLVASAERGQERIIATVFG 250

Query: 270 MPTSQERDQKALELITSFLEK----KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQF 325
             +S  R+Q+  EL+    ++     +++     R D   + + +  L + K  R  ++ 
Sbjct: 251 GRSSATRNQRVAELLDLGFQRAPSVASVRKPAPPRYDRAFAQATRTDLALAKSPRPAARP 310

Query: 326 KKIDAKAHST 335
           + +      T
Sbjct: 311 QPVATLVAET 320


>gi|320186097|gb|EFW60841.1| D-alanyl-D-alanine carboxypeptidase [Shigella flexneri CDC 796-83]
          Length = 403

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 137/276 (49%), Gaps = 11/276 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPAS 79
           + R +      LFL       A +    P     + I++D    ++      DE   PAS
Sbjct: 10  LLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPAS 69

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +      
Sbjct: 70  LTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNK 129

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL    Q +TARD
Sbjct: 130 DVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARD 189

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNI 252
            A+LG  L  + P+ Y     ++F +      N N+LL   + N+DG+KTG T  +G+N+
Sbjct: 190 MALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNL 249

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           V S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 250 VASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 285


>gi|288962599|ref|YP_003452893.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510]
 gi|288914865|dbj|BAI76349.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510]
          Length = 451

 Score =  301 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 87/275 (31%), Positives = 140/275 (50%), Gaps = 1/275 (0%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           +  I+R   ++  +  +     +MA          + ++D++   +   K   E   P+S
Sbjct: 74  AALIRRLAGILSLVAAVLSATPAMALSQPDTAARQAYLVDLSSGAVLLDKNGAERMAPSS 133

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TKMMT Y+ ++ L   +  L+T  P+S+TA     S+++LK  +    E  +  L+  S
Sbjct: 134 MTKMMTAYLTYDALVHGRTTLDTSFPISQTAWKMGGSRMFLKLGSTVRVEDLLRGLLIDS 193

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND + A  E ++GSE  FA LM+ KA+++GM ++ + NASG  D    TTARD AIL  
Sbjct: 194 GNDAAVALAEGLAGSESAFAGLMNAKARELGMADSHFMNASGWPDPGHYTTARDLAILAT 253

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            L ++FPQ+Y Y S R F +      N N LL    ++DGIKTG+T   G+ +  S    
Sbjct: 254 RLIRDFPQFYHYESERNFTWNGIRQGNRNPLLYHPVSVDGIKTGHTEVGGYGLTASGERN 313

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
              +V VV G+P+ Q R+ +   L+        L 
Sbjct: 314 GRRLVLVVNGLPSPQSRNDEPTRLLDWAWNSFKLY 348


>gi|149909670|ref|ZP_01898322.1| D-alanyl-D-alanine serine-type carboxypeptidase [Moritella sp.
           PE36]
 gi|149807184|gb|EDM67139.1| D-alanyl-D-alanine serine-type carboxypeptidase [Moritella sp.
           PE36]
          Length = 388

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 95/275 (34%), Positives = 157/275 (57%), Gaps = 11/275 (4%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMT 85
           ++  +   S  + +  S +   P  ++   I+ID +  ++   K  D+   PASLTKMMT
Sbjct: 9   ILTSLAMASFSLSAAPSVIPDTPVVAAKAFILIDFDSGKVIAEKNADDSLKPASLTKMMT 68

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSAND 142
            Y+I + ++S  ++L+ Q+ +SK A  +N    SK++++     T E+    +I +S ND
Sbjct: 69  SYVIGQEIRSGNINLDDQVTISKNAWAKNFPDSSKMFIEVGKTITVEKLNQGIIVQSGND 128

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
              A  E+I+G+E  FA LM++ +K++GM  T + N+ GL  K+Q TTARD A LG  L 
Sbjct: 129 ACVAMAEYIAGTEGAFAQLMNSWSKQLGMDATHFANSHGLDSKDQYTTARDMATLGQALI 188

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           ++ P+ Y+ +S +KF Y      N N LL  K  N+DGIKTG+T  +G+N+V+S    + 
Sbjct: 189 RDVPEEYRIYSQKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATKDNM 248

Query: 262 PIVAVVMGMPTSQERDQKALELIT---SFLEKKTL 293
            +VAVV+G  ++  R  ++ +L+     F E  TL
Sbjct: 249 RLVAVVLGTKSADARKAESKKLLNFGFRFYETVTL 283


>gi|53803228|ref|YP_115023.1| D-alanyl-D-alanine carboxypeptidase [Methylococcus capsulatus str.
           Bath]
 gi|53756989|gb|AAU91280.1| putative D-alanyl-D-alanine carboxypeptidase [Methylococcus
           capsulatus str. Bath]
          Length = 362

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 109/245 (44%), Positives = 154/245 (62%), Gaps = 2/245 (0%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E  A P YS++V++V  +++   +  DE R+PASLTKMMTLY++FE L   ++ L     
Sbjct: 25  EAVAAP-YSALVMEVESDRVLYERNADEIRHPASLTKMMTLYLVFEALVQGRISLYDTFY 83

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
            S  AA+++PS++ L+     T E+GILAL+T SAND +   GE ++GSE  FA +M+ K
Sbjct: 84  ASSYAASRSPSRIGLRPGDPLTVEEGILALVTCSANDAAATLGEGLAGSEPAFAAMMTRK 143

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
           A+++GM  T+++NASGL D  Q+TTARD   LG  L K+FPQYY YFS  +F+YR R   
Sbjct: 144 ARELGMSQTVFRNASGLPDPEQVTTARDMYRLGKALLKHFPQYYPYFSTSRFQYRGRSFH 203

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           NHN LL   +  DGIKTG+   SGFN+V S R     +V VV G  +S  RD    +++ 
Sbjct: 204 NHNHLLENYYGADGIKTGFVNASGFNLVASARRNGVRLVGVVFGGNSSFRRDAHMRDILD 263

Query: 286 SFLEK 290
               +
Sbjct: 264 DGFAQ 268


>gi|254474184|ref|ZP_05087575.1| penicillin-binding protein [Pseudovibrio sp. JE062]
 gi|211956714|gb|EEA91923.1| penicillin-binding protein [Pseudovibrio sp. JE062]
          Length = 485

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 116/276 (42%), Positives = 173/276 (62%), Gaps = 3/276 (1%)

Query: 18  PYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
           P+G +  ++       I+ +S+ + +  S   A  KY+ IV+D    ++         RY
Sbjct: 8   PFGRL--KKAFGQAVGIIAVSVAIATAPSVAEANSKYAGIVVDAKTGKVLYANNANARRY 65

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS TK+MTLY++FE L++ ++ LNT++ VS+ AA + P+KL L+       +  I ALI
Sbjct: 66  PASTTKIMTLYVLFEELEAGRVSLNTKMKVSRYAAGRPPTKLGLRVGGSLRVKDAIYALI 125

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
           T+SAND ST   E ISGSEK F   M+  A+ IGM+NT ++N  GL +  Q+TTA D A+
Sbjct: 126 TKSANDASTVIAEHISGSEKAFGRRMTQTARAIGMRNTTFRNPHGLPNSKQVTTAADLAL 185

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           LG  ++  FP+YYKYF+ R + Y  R + NHNKLL ++  +DGIKTGYT  SGFN+VT++
Sbjct: 186 LGRAIQDRFPKYYKYFNTRSYTYAGRRMGNHNKLLGRVRGVDGIKTGYTNASGFNLVTNV 245

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +  +  IVAVV+G  T + RD + ++LI  +L K +
Sbjct: 246 KRDNRQIVAVVLGGRTGKSRDAQMVKLINQYLPKAS 281


>gi|302879284|ref|YP_003847848.1| Beta-lactamase [Gallionella capsiferriformans ES-2]
 gi|302582073|gb|ADL56084.1| Beta-lactamase [Gallionella capsiferriformans ES-2]
          Length = 381

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 79/268 (29%), Positives = 140/268 (52%), Gaps = 9/268 (3%)

Query: 31  MGKILFLSIIMISMASELHAKPK------YSSIVIDVNKNQMTGFKQDEPR-YPASLTKM 83
           M   LF + +++S  S    +P+       S ++ D + NQ+   +    R  PASLTK+
Sbjct: 1   MKSFLFFAGLLLSFTSYALQQPEPPVLASKSYLLYDFSSNQILVNQNGHARLEPASLTKL 60

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAA--TQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           MT Y+ F  ++  KL L+  + V   A   +   S++ LK     T ++ +  LI +S N
Sbjct: 61  MTAYLTFSAIKQDKLKLDQTLTVPVDAPRNSSGESRMLLKPGQSVTVDELLHGLIVQSGN 120

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D +      ISGSE  F   M+ +A+++GM+NT + N  G+ +    ++A D AIL   L
Sbjct: 121 DAANTLAVQISGSEATFVEQMNKEAQRMGMKNTHFVNPVGMPNAQHYSSAYDMAILAAAL 180

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
            +++P++Y  F +R + + N    N N+LL      DG+KTG+T  +GF +V S +    
Sbjct: 181 IRDYPEHYPLFGLRDYTFNNVTQANRNRLLWLDPYADGLKTGHTETAGFCLVGSAKRDKR 240

Query: 262 PIVAVVMGMPTSQERDQKALELITSFLE 289
            +++VV+G  +  +R  ++ +L+    +
Sbjct: 241 RLISVVLGADSDNQRASESQKLLNYGFQ 268


>gi|125973197|ref|YP_001037107.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           ATCC 27405]
 gi|281417396|ref|ZP_06248416.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           JW20]
 gi|125713422|gb|ABN51914.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           ATCC 27405]
 gi|281408798|gb|EFB39056.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           JW20]
          Length = 404

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 80/279 (28%), Positives = 151/279 (54%), Gaps = 5/279 (1%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S +++D    Q+    +   R P AS+TK+M++ ++ E + S K++++  +  S+ AA
Sbjct: 53  AKSYVLMDAETGQILLENRSHERLPIASITKIMSMLLVMEAIDSGKINMDDIVTASEYAA 112

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S+ Y++    +T    + A+ T S+NDV+ +  E ++GSE+ F +LM+ KAK++GM
Sbjct: 113 SMGGSQAYIEPGEQYTVRDALKAVATHSSNDVTVSLAELVAGSEQVFVVLMNEKAKELGM 172

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIITNHNK 229
            NT + + +GL D+   +TA D A++   L    P+  ++ SI    +RN    + N NK
Sbjct: 173 NNTNFLDCTGLTDEGHYSTAYDVALMSRELIVKHPKILEFTSIWMDTFRNGEFQLVNTNK 232

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           L++     DG+KTG+TR +G  +  + +  D  +++VV+G P S  R  +  +L+     
Sbjct: 233 LVHFYEGCDGLKTGFTRAAGHCLSATAKRNDMRLISVVLGEPDSNTRFAETRKLLDYGFA 292

Query: 290 KKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
               + +Q ++K  + +    K  +I K+K  Y    K+
Sbjct: 293 NY--ESKQVNKKGEVVNEIEVKRALIPKIKALYGDDVKL 329


>gi|313650258|gb|EFS14670.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri 2a str.
           2457T]
 gi|332759746|gb|EGJ90049.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri
           4343-70]
 gi|332760581|gb|EGJ90870.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri
           2747-71]
 gi|332763049|gb|EGJ93294.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-671]
 gi|332768006|gb|EGJ98192.1| penicillin-binding protein 6 [Shigella flexneri 2930-71]
 gi|333007039|gb|EGK26534.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-218]
 gi|333020974|gb|EGK40232.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-304]
          Length = 321

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 137/276 (49%), Gaps = 11/276 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPAS 79
           + R +      LFL       A +    P     + I++D    ++      DE   PAS
Sbjct: 7   LLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPAS 66

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +      
Sbjct: 67  LTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNK 126

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL    Q +TARD
Sbjct: 127 GVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARD 186

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNI 252
            A+LG  L  + P+ Y     ++F +      N N+LL   + N+DG+KTG T  +G+N+
Sbjct: 187 MALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNL 246

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           V S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 247 VASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 282


>gi|119946648|ref|YP_944328.1| Serine-type D-Ala-D-Ala carboxypeptidase [Psychromonas ingrahamii
           37]
 gi|119865252|gb|ABM04729.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Psychromonas ingrahamii 37]
          Length = 406

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 82/278 (29%), Positives = 146/278 (52%), Gaps = 8/278 (2%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPR 75
           +  +   + I L+   L  S  + +  +   + P+  +   ++ID N  ++      + R
Sbjct: 10  HSQVSFMKKISLLVTALIFSFNLFANPTITPSAPEIGAKGYLLIDFNSGKVLSENNSDVR 69

Query: 76  Y-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQG 131
             PASLTKMMT YII + ++S  L  + ++ +S+ A ++N    SK++++     +    
Sbjct: 70  LNPASLTKMMTSYIIGQEIKSGNLSPDDKVTISEKAWSKNFPESSKMFIEVGKEVSVADL 129

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
              +I +S ND   A  E+I+GSE  FA LM++ A ++GM NT +KN+ GL  +   TT 
Sbjct: 130 NRGIIIQSGNDACVAMAEYIAGSEGAFADLMNSWAAQLGMNNTQFKNSHGLTAEGHYTTP 189

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGF 250
            D AIL   L  + P  Y  +S + F++      N N LL  K  ++DGIKTG+T  +G+
Sbjct: 190 HDMAILAQALINDVPDEYLIYSEKSFKFNGIDQPNRNALLWDKSLDVDGIKTGHTNEAGY 249

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           ++++S       +++VVMG  ++  R  ++ +L+    
Sbjct: 250 SLISSATKDGMRLISVVMGTRSTSARLTESKKLLNWGF 287


>gi|256004001|ref|ZP_05428987.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           DSM 2360]
 gi|255992129|gb|EEU02225.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           DSM 2360]
 gi|316940572|gb|ADU74606.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           DSM 1313]
          Length = 404

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 80/279 (28%), Positives = 151/279 (54%), Gaps = 5/279 (1%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S +++D    Q+    +   R P AS+TK+M++ ++ E + S K++++  +  S+ AA
Sbjct: 53  AKSYVLMDAETGQILLENRSHERLPIASITKIMSMLLVMEAIDSGKINMDDIVTASEYAA 112

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S+ Y++    +T    + A+ T S+NDV+ +  E ++GSE+ F +LM+ KAK++GM
Sbjct: 113 SMGGSQAYIEPGEQYTVRDALKAVATHSSNDVTVSLAELVAGSEQVFVVLMNEKAKELGM 172

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIITNHNK 229
            NT + + +GL D+   +TA D A++   L    P+  ++ SI    +RN    + N NK
Sbjct: 173 NNTNFLDCTGLTDEGHYSTAYDVALMSRELIVKHPKILEFTSIWMDTFRNGEFQLVNTNK 232

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           L++     DG+KTG+TR +G  +  + +  D  +++VV+G P S  R  +  +L+     
Sbjct: 233 LVHFYEGCDGLKTGFTRAAGHCLSATAKRNDMRLISVVLGEPDSNTRFAETRKLLDYGFA 292

Query: 290 KKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
               + +Q ++K  + +    K  +I K+K  Y    K+
Sbjct: 293 NY--ESKQVNKKGEVVNEIEVKRALIPKIKALYGDDVKL 329


>gi|170728041|ref|YP_001762067.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella woodyi ATCC
           51908]
 gi|169813388|gb|ACA87972.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella woodyi ATCC
           51908]
          Length = 390

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 150/280 (53%), Gaps = 10/280 (3%)

Query: 14  FLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD- 72
           FL  P  S+ +  +  L    +F + ++   A  + AK   + +++D N  Q+   +   
Sbjct: 3   FLNRPLKSLILATS--LASSFVFAAPVVTPNAPTVAAK---AFVLMDYNTGQVIAEENAY 57

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTE 129
           E   PASLTKMMT Y+I   ++   +  N Q+ +SK A ++N    SK++++     T +
Sbjct: 58  ESLNPASLTKMMTSYVIGHEIKVGNISPNDQVTISKKAWSKNFPDSSKMFIEVGKQVTVD 117

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
                +I +S ND   A  E I+G+E  F  LM++ AK++GMQ++ ++N+ GL  +N  T
Sbjct: 118 DLNHGIIIQSGNDACVAMAEHIAGTEDGFVDLMNSWAKQLGMQDSYFENSHGLDSENHKT 177

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNS 248
           TA D AILG  L ++ P+ Y  +  + F Y      N N LL  K  ++DGIKTG+T  +
Sbjct: 178 TAYDMAILGAALIRDVPEEYVLYKKKSFTYNGIKQYNRNGLLWDKSMHVDGIKTGHTSGA 237

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           G+N+VTS       +VAVVMG  +   R  ++ +++    
Sbjct: 238 GYNLVTSATKDGMRLVAVVMGTKSEAARKAESKKILNYGF 277


>gi|288958656|ref|YP_003448997.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510]
 gi|288910964|dbj|BAI72453.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510]
          Length = 396

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 83/271 (30%), Positives = 147/271 (54%), Gaps = 1/271 (0%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           S+ +   I + G  +      + + +         +I++D+  N +   K  DE   P+S
Sbjct: 15  SVAVAAGIAMAGATIGAGFTAVPVQAATIDTIAKQAILVDLTSNTVLFEKNADERMAPSS 74

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           ++K+MT Y++FE +++ +L L + +PVS+ A     SK++++       +  +  +I +S
Sbjct: 75  MSKIMTAYMVFEAIKAGRLTLESTLPVSERAWRMQGSKMFVELHNNIKVDDLLKGMIVQS 134

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND      E ++GSE+ FA   + +AK++G++++ + NA+G  D N   TARD AIL  
Sbjct: 135 GNDACIVLAEGLAGSEQSFAEQATKRAKELGLKSSNFVNATGWPDPNHYMTARDLAILAE 194

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            L K+FP++YKY SIR+F+Y      N N LL +  N+DG+KTG+T   G+ +  S    
Sbjct: 195 RLIKDFPEFYKYDSIREFKYHGITQGNRNPLLYRNMNVDGLKTGHTDAGGYGLTASGERD 254

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              ++ VV G+P+ Q R  ++  LI     +
Sbjct: 255 GRRLLLVVNGLPSMQARADESARLIEWGFRE 285


>gi|91975804|ref|YP_568463.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisB5]
 gi|91682260|gb|ABE38562.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisB5]
          Length = 492

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 90/315 (28%), Positives = 157/315 (49%), Gaps = 16/315 (5%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMM 84
           R I +   ++ ++   ++ A  L        ++I+ +  ++   +    P YPAS+TK+M
Sbjct: 14  RWIAIAATLMLMAAPRLASAEAL--------LLIEADTGKVLQAENATYPWYPASVTKIM 65

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T Y+  + ++  +L L++ + VS  AA Q+PSK+  +  T  T +  +  ++ +SAND++
Sbjct: 66  TAYVTLKAVKEGRLTLDSLLTVSPVAAAQSPSKMGFRPGTQITVDNALKMMMVKSANDMA 125

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
               E + GS   F+  M+  A+++GM  T Y N +GL    Q+T+ARD  IL   + ++
Sbjct: 126 VVLAEGVGGSIDGFSATMNATAQRLGMTQTHYVNPNGLPADGQVTSARDLGILARAMIRD 185

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
            P+Y  +  I   R+  R+  N NKL+ +    DG KTG+   SG+N+V S       ++
Sbjct: 186 LPEYEYFSHIPAIRFGKRVTHNFNKLIGRYPGADGFKTGFICASGYNLVASATRNGRRLI 245

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKTLKH--QQTHRKDNLSSTS-----LKKSLMIKK 317
           AVV+G  + Q+R  KA +L+       TL          DNL+        L++ +   K
Sbjct: 246 AVVLGANSGQDRAVKAAQLLERGFSANTLAWLTPSLGTVDNLAPIDATPPNLREEMCGPK 305

Query: 318 LKRTYSQFKKIDAKA 332
            KR  S   +  A  
Sbjct: 306 RKRPASDEDEQVASV 320


>gi|88800720|ref|ZP_01116279.1| D-alanyl-D-alanine carboxypeptidase [Reinekea sp. MED297]
 gi|88776584|gb|EAR07800.1| D-alanyl-D-alanine carboxypeptidase [Reinekea sp. MED297]
          Length = 394

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 86/277 (31%), Positives = 142/277 (51%), Gaps = 9/277 (3%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMA-SELHAKPKYSS---IVIDVNKNQMT-GFKQDEPR 75
           S+ I R++Q +G  L       ++A   + A P+ ++   I++D    Q+     + E  
Sbjct: 4   SVNIHRHLQRLGTFLIGITATCALAEPIIPAAPQLAATSYILMDAETGQVLVAHNEHEQM 63

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
            PASLTK+MT YI    +   +L L  +  VSK A     S+++++     T E  +  +
Sbjct: 64  PPASLTKLMTSYIAEREILEGRLELTDETLVSKKAWQMPGSRMFIEVGDLVTIEDLLRGV 123

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN---QITTAR 192
           I  S ND S A  E I+G+E  FA LM+  A+ +GM NT + NASGL  +N     ++A 
Sbjct: 124 IIVSGNDASVALAEHIAGTEDLFAQLMNKYAENLGMINTHFSNASGLPPENGQEHYSSAY 183

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRI-ITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           D A+L   L  +  ++Y  ++ R F+Y       N N+LL    ++DG+KTG+T  +G+ 
Sbjct: 184 DLALLSQALIYDNAEFYPLYAERSFKYGPVSAQPNRNRLLGTNPDVDGLKTGHTEEAGYC 243

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +  S       +++VVMG  +   R Q+  +L+T   
Sbjct: 244 LAASAERDGMRLISVVMGTRSEDARAQETQKLLTYGF 280


>gi|260777069|ref|ZP_05885963.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606735|gb|EEX33009.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 394

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 89/310 (28%), Positives = 160/310 (51%), Gaps = 13/310 (4%)

Query: 29  QLMGKILFLSI--IMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMT 85
            L+  ++  S   ++   A +++AK     +V+D +  Q+   +  D P  PASLTK+MT
Sbjct: 9   ALLCTLVVASAEAVITPDAPQINAK---GYVVMDYHSGQVVASQNPDTPLAPASLTKLMT 65

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSAND 142
            Y++ + + + +L  + +  +S+ A + N   PSK+++K     +    +L +I +S ND
Sbjct: 66  AYVVGQEINAGRLSWDDKATISRNAWSVNFPEPSKMFIKPGDEISIRNLMLGVIVQSGND 125

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            S A  E ++GSE  F  LM+   + +GM+NT + NA GL   N  TT +D A L   + 
Sbjct: 126 ASVALAEHVAGSESAFVSLMNGWTQTLGMENTQFINAHGLDGDNIQTTPKDMANLMRAII 185

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           K+ P+ YK +  +KF + +    N NKLL  +  N+DG KTGYT N+G+++V+S      
Sbjct: 186 KDVPEVYKLYQEKKFTWNDIEQYNRNKLLWDRSLNVDGGKTGYTENAGYSLVSSATEGRM 245

Query: 262 PIVAVVMGMPTSQERDQKALELI---TSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKL 318
            +++VVMG P+ Q R   +  L+     F +   +  +      +      ++++ +   
Sbjct: 246 RLISVVMGTPSQQARTSASRNLLGYGFRFFDTVQVAKKDEVIMQSRVWKGAEENVPVTVA 305

Query: 319 KRTYSQFKKI 328
           +  Y  F + 
Sbjct: 306 ETVYLTFPRA 315


>gi|268590416|ref|ZP_06124637.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rettgeri DSM
           1131]
 gi|291314330|gb|EFE54783.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rettgeri DSM
           1131]
          Length = 403

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 90/289 (31%), Positives = 151/289 (52%), Gaps = 18/289 (6%)

Query: 29  QLMGKILFLSIIMISMASE------LHAKPKY---SSIVIDVNKNQMTGF-KQDEPRYPA 78
            ++G  L L    I+ A+E      + A P     + I+ID N  ++      D+ R PA
Sbjct: 13  TVLGSALLLMTANIANANETFPNTSIPAAPAIDAEAYILIDYNSGKVLAESNADQRRDPA 72

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGI 132
           SLTKMMT Y+I + ++S K+  N  + V   A        +  S ++LK     +  Q  
Sbjct: 73  SLTKMMTSYVIGQAIKSGKIGENDIVTVGNDAWATGNPVFKGSSLMFLKPGDRVSVSQLT 132

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             +  +S ND   A  ++I+G +  F  LM+    K+G++NT ++   GL  + Q ++AR
Sbjct: 133 RGINLQSGNDACVAMADYIAGDQANFVQLMNGYVNKLGLKNTHFQTVHGLDAEGQYSSAR 192

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFN 251
           D A++G  L ++ P+ Y  +  ++F + N   TN N LL  K   +DGIKTG+T  +G+N
Sbjct: 193 DMALIGQALVRDVPEEYAIYKEKEFTFNNIRQTNRNGLLWDKSLTVDGIKTGHTNAAGYN 252

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE-KKTLKHQQTH 299
           +V S    D  +++VVMG  +S+ RD ++ +L+T      +T+K  Q +
Sbjct: 253 LVASATEGDMRLISVVMGGKSSKGRDAESKKLLTYGFRFYETVKPLQAN 301


>gi|212709668|ref|ZP_03317796.1| hypothetical protein PROVALCAL_00715 [Providencia alcalifaciens DSM
           30120]
 gi|212687479|gb|EEB47007.1| hypothetical protein PROVALCAL_00715 [Providencia alcalifaciens DSM
           30120]
          Length = 401

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 88/322 (27%), Positives = 157/322 (48%), Gaps = 21/322 (6%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           +G  LF+ +     A++    P+  +   +++D N  ++      DE   PASLTK+MT 
Sbjct: 15  IGLSLFVVMSASVYAAQTPVAPQVDAKAFVLMDYNSGKILASSNPDERLDPASLTKIMTS 74

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSA 140
           Y++ + +++ K+     + VS+ A        +  S ++LK K   +       ++ +S 
Sbjct: 75  YVVGQAVKAGKITPQDMVTVSEAAWATGNPILKGSSLMFLKPKDRVSVLDLNKGVVIQSG 134

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND S A  E ++GS++ F  LM+   +KIG+ NT +K   GL    Q +TARD A+L   
Sbjct: 135 NDASIALAEHVAGSQESFVDLMNGYVQKIGLTNTHFKTVHGLDSDGQYSTARDMAVLAQA 194

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYK 259
           L ++ P  Y     ++F + N    N N+LL   +  +DG+KTG+T  +G N+V S    
Sbjct: 195 LIRDVPDEYVLHKEKEFTFNNIRQPNRNRLLWSQNLKVDGVKTGHTSGAGHNLVASATDG 254

Query: 260 DDPIVAVVMGMPTSQERDQKALELITS---FLEKKT-------LKHQQTHRKDNLSSTSL 309
              +++VV+G P+ + R  ++ +L+T    F E  T       L+ Q+    D       
Sbjct: 255 PMRLISVVLGAPSDRVRFAESEKLLTWGFRFFETVTPIKGDAVLQKQRVWFGDISEVPLG 314

Query: 310 KKSLMIKKLKRTYSQFKKIDAK 331
            ++ +   + +   Q  K+D K
Sbjct: 315 VENDVAVTIPKGQLQNLKVDIK 336


>gi|24112205|ref|NP_706715.1| putative D-alanyl-D-alanine carboxypeptidase, fraction A;
           penicillin-binding protein 5 [Shigella flexneri 2a str.
           301]
 gi|24051049|gb|AAN42422.1| putative D-alanyl-D-alanine carboxypeptidase, fraction A;
           penicillin-binding protein 5 [Shigella flexneri 2a str.
           301]
          Length = 338

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 82/288 (28%), Positives = 140/288 (48%), Gaps = 11/288 (3%)

Query: 12  KTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTG 68
            T + +      + R +      LFL       A +    P     + I++D    ++  
Sbjct: 2   DTRVAFMTQYSSLLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLA 61

Query: 69  F-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLK 121
               DE   PASLTK+MT Y++ + L++ K+ L   + V K A        +  S ++LK
Sbjct: 62  EGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLK 121

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
                +       +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   G
Sbjct: 122 PGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHG 181

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGI 240
           L    Q +TARD A+LG  L  + P+ Y     ++F +      N N+LL   + N+DG+
Sbjct: 182 LDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGM 241

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 242 KTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 289


>gi|163795501|ref|ZP_02189467.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium BAL199]
 gi|159179100|gb|EDP63633.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium BAL199]
          Length = 385

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 88/326 (26%), Positives = 161/326 (49%), Gaps = 16/326 (4%)

Query: 25  QRNIQLMG--KILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQD-EPRYPA 78
           +R +  +G   +L  ++ +I   +   A    S+   I++D +  Q+   K   E   PA
Sbjct: 3   RRYLSFVGFLAVLVTTVPLILGGARPVAALDTSAREAILMDYDTGQVLFEKNSTELMPPA 62

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           S+TK+MT+++ FE L+  +L +  +IP+S+ A  +  SK++++  +       ++ +I +
Sbjct: 63  SMTKIMTVFLAFERLKDGRLKMTDEIPISENAWRKGGSKMFVEVGSRVVLSDLLMGIIVQ 122

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND + A  E ISGSE+ F  LM+ +A++IG++ ++++N++G  D     TA D A+L 
Sbjct: 123 SGNDATIALAEAISGSEEAFGELMTTRAREIGLERSVFRNSTGWPDPEHRMTAHDLAVLA 182

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
               + FP YY  FS   F Y      N N LL K   +DG+KTG+T N+G+ +  S + 
Sbjct: 183 AETIRRFPDYYSLFSETSFTYNKIKQGNRNPLLYKAMGVDGLKTGHTENAGYGLTVSAKR 242

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSF---LEKKTLKHQ-------QTHRKDNLSSTS 308
            D  ++ VV G+ + +ER  ++  LI       E  T   +       +    D      
Sbjct: 243 GDRRLILVVNGLSSVRERSDESERLIEWGFREFENLTFAKKGVPVETAEVWLGDRPKVPL 302

Query: 309 LKKSLMIKKLKRTYSQFKKIDAKAHS 334
           +    ++  +KR   +   +  +   
Sbjct: 303 VSDRDIVVAVKRAARKEMTVTVEYSG 328


>gi|146310988|ref|YP_001176062.1| D-alanyl-D-alanine carboxypeptidase fraction C [Enterobacter sp.
           638]
 gi|145317864|gb|ABP60011.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Enterobacter sp. 638]
          Length = 400

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 78/275 (28%), Positives = 136/275 (49%), Gaps = 12/275 (4%)

Query: 26  RNIQLMGKILFLSIIMI----SMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASL 80
           R +     +LFL    +      A E       + I++D    ++      DE   PASL
Sbjct: 9   RGLAAGSALLFLFSPTLYAAEQAAPEAPPVDARAWILMDYASGKVLAEGNADEQLDPASL 68

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILA 134
           TK+MT Y++ + L++ K+ L+  + + K A        +  S ++LK     +       
Sbjct: 69  TKIMTSYVVGQALKAGKIKLDDMVTIGKDAWATGNPALRGSSVMFLKPGDQVSVSDLNKG 128

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +I +S ND   A  ++++GS+  F  LM+  A+++G+  T +K   GL    Q +TARD 
Sbjct: 129 VIIQSGNDACIALADYVAGSQDSFIGLMNGYAQRLGLTKTTFKTVHGLDAPGQFSTARDM 188

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIV 253
           A+LG  L  + P+ Y     ++F +      N N+LL   + N+DG+KTG T  +G+N+V
Sbjct: 189 ALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNVNVDGMKTGTTAGAGYNLV 248

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 249 ASATQGDMRLISVVLGTKTDRIRFNESEKLLTWGF 283


>gi|88810567|ref|ZP_01125824.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrococcus mobilis
           Nb-231]
 gi|88792197|gb|EAR23307.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrococcus mobilis
           Nb-231]
          Length = 340

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 78/231 (33%), Positives = 133/231 (57%), Gaps = 1/231 (0%)

Query: 59  IDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           +D + NQ+      D+   PASLTKMMT Y++F  L+SK + ++ Q+ VS+ A  +  S+
Sbjct: 1   MDHDSNQVLVEVNVDKRHDPASLTKMMTAYVVFSELKSKHIAIDDQVTVSEKAWREPGSR 60

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           ++++       +  +  +I +S ND S A  E ++G+E  FA +M+  A+ +GM++T Y 
Sbjct: 61  MFIEVGDKVPVKALLQGMIVQSGNDASVALAEHVAGNESTFAQVMNQYARTLGMEHTHYV 120

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNI 237
           NA+GL D    TTA D A+L   L ++FPQY+  F+ +K+ Y      N NKLL +  ++
Sbjct: 121 NATGLPDPKHYTTAHDTALLSQALMRDFPQYHSMFAEKKYTYNGIEQYNRNKLLWRDPSV 180

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           DG+KTG+T  +G+ + +S    +  +++VVMG  + + R      L+    
Sbjct: 181 DGLKTGHTEAAGYCLASSAERDNMRLISVVMGAGSEEARLSDTQALLNYGF 231


>gi|39937326|ref|NP_949602.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris CGA009]
 gi|39651184|emb|CAE29707.1| possible D-alanyl-D-alanine carboxypeptidase (penicillin-binding
           protein) [Rhodopseudomonas palustris CGA009]
          Length = 484

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 91/318 (28%), Positives = 161/318 (50%), Gaps = 11/318 (3%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKM 83
           +R+   +  ++   + +  +    +A+   + ++I+ +  ++        P +PAS+TK+
Sbjct: 9   RRSSSFLTIVVAALLSLTVLPRVANAE---ALLLIEADTGKVLQADNATYPWHPASVTKL 65

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MTLY+  + ++  +L  +T + VS  A+ Q+PSK+  +  T  T +  +  ++ +SAND+
Sbjct: 66  MTLYVTLQAVKQGRLTPDTLLTVSPIASAQSPSKMGFRAGTQVTVDNALKMMMVKSANDM 125

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           +    E + GS   F+ +M++ A ++GM  T Y N +GL    Q+T+ARD AIL   + +
Sbjct: 126 AVVLAEGVGGSIDGFSAMMNDTAARLGMTQTHYVNPNGLPADEQVTSARDLAILARAIIR 185

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           + P+Y  Y  I   R+  R+  N NKL+ +    DG KTG+   SG+N+V S       +
Sbjct: 186 DLPEYEYYVHIPAIRFGKRVTRNFNKLIGRYPGADGFKTGFICASGYNLVASATRNGRRL 245

Query: 264 VAVVMGMPTSQERDQKALELITSFLEKKTLKH--QQTHRKDNL-----SSTSLKKSLMIK 316
           +AVV+G  + Q+R  KA +L+       TL          DNL     +   L+  +   
Sbjct: 246 IAVVLGANSGQDRAVKAAQLLERGFSTNTLAWLTPSLGTVDNLAPIAAAPPDLRDEMCGP 305

Query: 317 KLKRTYSQFKKIDAKAHS 334
           K KR  S   +  A A S
Sbjct: 306 KRKRPASDEDETVANALS 323


>gi|297616714|ref|YP_003701873.1| serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144551|gb|ADI01308.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 381

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 76/274 (27%), Positives = 138/274 (50%), Gaps = 5/274 (1%)

Query: 25  QRNIQLMGKILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTK 82
           +R + LM  +LF S+   + A   +      S +++D +  ++   K +  R  PAS+TK
Sbjct: 5   KRLLWLMAWVLFFSLAFPTTAWGAVVDVEADSYVLMDADSGKVLLAKNEHKRLPPASMTK 64

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MTL +  E L   K+ L  ++  S+ A     S++YL+     T E  ++A+   SAND
Sbjct: 65  LMTLILAMEDLYKGKVDLKEKVVASENAWKLGGSQIYLEPGEEMTFEDMVIAIAVGSAND 124

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
              A  E + GS ++F   M+ KAK++ +++T + NA GL D +  ++A D A++     
Sbjct: 125 ACVAVAEHLDGSHEEFVKRMNAKAKELRLKDTHFVNAYGLPDPDHYSSAYDLALMARYAL 184

Query: 203 KNFPQYYKYFSIRKF--RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
             +P+  ++ SI+++  R     + N NKLL      DG KTG+T  + F +V++ +   
Sbjct: 185 -CYPKLLEFTSIKEYNLRQGEFKLYNTNKLLWHYPGTDGFKTGWTNEAKFCLVSTAKRNG 243

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
             ++ VVM  P      + +++L      K   +
Sbjct: 244 LRLICVVMASPQKGGNFRDSMKLFNYGFAKYAYR 277


>gi|192293106|ref|YP_001993711.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris TIE-1]
 gi|192286855|gb|ACF03236.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris TIE-1]
          Length = 483

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 91/318 (28%), Positives = 161/318 (50%), Gaps = 11/318 (3%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKM 83
           +R+   +  ++   + +  +    +A+   + ++I+ +  ++        P +PAS+TK+
Sbjct: 9   RRSSSFLTIVVAALLSLTVLPRVANAE---ALLLIEADTGKVLQADNATYPWHPASVTKL 65

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MTLY+  + ++  +L  +T + VS  A+ Q+PSK+  +  T  T +  +  ++ +SAND+
Sbjct: 66  MTLYVTLQAVKQGRLTPDTLLTVSPIASAQSPSKMGFRAGTQVTVDNALKMMMVKSANDM 125

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           +    E + GS   F+ +M++ A ++GM  T Y N +GL    Q+T+ARD AIL   + +
Sbjct: 126 AVVLAEGVGGSIDGFSAMMNDTAARLGMTQTHYVNPNGLPADEQVTSARDLAILARAIIR 185

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           + P+Y  Y  I   R+  R+  N NKL+ +    DG KTG+   SG+N+V S       +
Sbjct: 186 DLPEYEYYVHIPAIRFGKRVTRNFNKLIGRYPGADGFKTGFICASGYNLVASATRNGRRL 245

Query: 264 VAVVMGMPTSQERDQKALELITSFLEKKTLKH--QQTHRKDNL-----SSTSLKKSLMIK 316
           +AVV+G  + Q+R  KA +L+       TL          DNL     +   L+  +   
Sbjct: 246 IAVVLGANSGQDRAVKAAQLLERGFSTNTLAWLTPSLGTVDNLAPIAAAPPDLRDEMCGP 305

Query: 317 KLKRTYSQFKKIDAKAHS 334
           K KR  S   +  A A S
Sbjct: 306 KRKRPASDEDETVANALS 323


>gi|307546895|ref|YP_003899374.1| serine-type D-Ala-D-Ala carboxypeptidase [Halomonas elongata DSM
           2581]
 gi|307218919|emb|CBV44189.1| serine-type D-Ala-D-Ala carboxypeptidase [Halomonas elongata DSM
           2581]
          Length = 494

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 112/275 (40%), Positives = 168/275 (61%), Gaps = 5/275 (1%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
            P+Y+ IV+D + +++   +  D PRYPASLTKMMTLY++FE L    + L  ++PVS T
Sbjct: 44  NPRYAGIVVDTDTSEILYAENADAPRYPASLTKMMTLYMLFERLDQGGMTLGQRLPVSAT 103

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A+    +KL+LK       E+ I ALI RSANDV+    E + GSE  FA +M+++A ++
Sbjct: 104 ASEMPATKLWLKPGDSIPVEKAIQALIVRSANDVAVVVAEALGGSESHFARMMTSRAHEL 163

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM NT ++NASGL D  Q+TTARD A+L   L  +FPQYY YFS+ +F +R + +T HN 
Sbjct: 164 GMSNTTFRNASGLPDDRQVTTARDMALLARRLMLDFPQYYPYFSLDRFTWRGKTLTGHNN 223

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           LL+     DG+KTG+ R SGFN+ TS +     I++VVMG  T+  RD+    L+     
Sbjct: 224 LLDSYPGADGLKTGFIRASGFNVATSAKRGGRRILSVVMGGYTASSRDEHMANLLDRGFL 283

Query: 290 KKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
           + +L       +  L++T + +  ++ + +R  S 
Sbjct: 284 RASL----VDGRGFLANTRISEDYLLPEARRPMSP 314


>gi|90022977|ref|YP_528804.1| penicillin-binding protein 6 [Saccharophagus degradans 2-40]
 gi|89952577|gb|ABD82592.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Saccharophagus degradans 2-40]
          Length = 393

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 83/274 (30%), Positives = 149/274 (54%), Gaps = 12/274 (4%)

Query: 28  IQLMGKI---LFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKM 83
           + L+  I   +F + +++    EL AK   + ++ID +  ++      DE   PASLTKM
Sbjct: 10  VCLLATICVPVFAAQVIVPAPPELSAK---AYLLIDADTGKVIVESNADEVMEPASLTKM 66

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITR 138
           MT YI+ E ++S +L  +  + VS  A  +       S ++L  ++       +  +I +
Sbjct: 67  MTSYIVSEEIESGRLTEDALVLVSDDAWRRGGSASGSSTMFLDPRSEVRVIDLLRGVIIQ 126

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND S A  + I+G E  FA +M+ +A+ +GM +T ++NA+G   +  +TTARD AIL 
Sbjct: 127 SGNDASIALAQHIAGDESAFADVMNQQAQLLGMNSTNFENATGWPAEGHVTTARDLAILA 186

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             L  + P++Y  +S + F+Y      N N+LL +  ++DG+KTG+T ++G+ +V S + 
Sbjct: 187 RALVNDHPEHYALYSEKYFKYNGINQPNRNRLLFRDDSVDGMKTGHTESAGYCLVASAKQ 246

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
            D  +++VV+G  +   R Q + +L++       
Sbjct: 247 DDMRLISVVLGTKSDSARTQDSQKLLSYGFRYYK 280


>gi|119477453|ref|ZP_01617644.1| D-alanyl-D-alanine carboxypeptidase [marine gamma proteobacterium
           HTCC2143]
 gi|119449379|gb|EAW30618.1| D-alanyl-D-alanine carboxypeptidase [marine gamma proteobacterium
           HTCC2143]
          Length = 384

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 82/264 (31%), Positives = 134/264 (50%), Gaps = 8/264 (3%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
                I+ID +  ++   K  DE   PASLTK+MT Y++   L    +     + +S+ A
Sbjct: 31  AASGYILIDADSGRVITEKNADEKLPPASLTKLMTSYVLSYELAEGNVANTDMVTISENA 90

Query: 111 ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
             QNP     S ++++       +     ++  S ND S A  E ++GSE  FA +M+  
Sbjct: 91  WAQNPTFAGSSLMWIEVGKQVNLKDLHKGVVISSGNDASVAVAEHLAGSESAFADVMNQH 150

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
           A  +GM  + + NA GL D     TARD AIL   + K +P+ Y  +S   + Y N   T
Sbjct: 151 AALLGMTGSHFVNAHGLPDPEHYMTARDLAILSKAILK-YPEEYALYSQPDYTYNNITQT 209

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N N+LL K  ++DG+KTG+T  +GF +V+S +     +++VVMG  +   R+ ++ +L++
Sbjct: 210 NRNRLLWKDDSVDGLKTGHTEEAGFCLVSSAKRNGMRLISVVMGAKSQSAREVESQKLLS 269

Query: 286 SFLEKKTLKHQQTHRKDNLSSTSL 309
                    HQ     D L++T +
Sbjct: 270 YGFRYFET-HQLYSTGDALTATKI 292


>gi|227112044|ref|ZP_03825700.1| penicillin-binding protein 6 [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 401

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 80/269 (29%), Positives = 142/269 (52%), Gaps = 11/269 (4%)

Query: 31  MGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTL 86
           +G +L + ++  + A +L A P     + I+ID +  ++      DE   PASLTK+M  
Sbjct: 15  VGTVLLVGLVPFTYAEQLPAVPQIDAKAYILIDHHSGKVLAESNADERLDPASLTKIMAS 74

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSA 140
           Y+I + ++S K+    ++ V K A        +  S ++LK        +    ++ +S 
Sbjct: 75  YVIGQAIKSGKIRPTDEVTVGKDAWATGNPALRGSSLMFLKPGDRIPVSELNKGIVIQSG 134

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND S A  ++++GS+  F  LM+N AK + + NT ++   GL    Q +TARD A+LG  
Sbjct: 135 NDASIALADYVAGSQDAFVSLMNNYAKALNLTNTNFRTVHGLDAPGQYSTARDMALLGQA 194

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYK 259
           L ++ P+ Y     ++F + N    N N+LL   + N+DG+KTG+T  +G N+V S    
Sbjct: 195 LIRDVPEEYALHKEKEFTFNNIRQPNRNRLLWSTNLNVDGVKTGHTSGAGHNLVASATEG 254

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFL 288
           +  +++VV+G  T   R +++ +L+T   
Sbjct: 255 NMRLISVVLGAQTDAIRFRESEKLLTWGF 283


>gi|50121610|ref|YP_050777.1| penicillin-binding protein 6 [Pectobacterium atrosepticum SCRI1043]
 gi|49612136|emb|CAG75586.1| penicillin-binding protein 6 [Pectobacterium atrosepticum SCRI1043]
          Length = 401

 Score =  298 bits (764), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 81/269 (30%), Positives = 141/269 (52%), Gaps = 11/269 (4%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGF-KQDEPRYPASLTKMMTL 86
           +G +L +  +  + A +L A P+  +   I+ID +  ++      DE   PASLTK+M  
Sbjct: 15  VGTVLLVGAVPFTYAEQLPAVPQIDAKAFILIDHDSGKVLAESNADERLDPASLTKIMAS 74

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSA 140
           Y+I + L+S K+    ++ V K A        +  S ++LK        +    ++ +S 
Sbjct: 75  YVIGQALKSGKIRPTDEVTVGKDAWATGNPALRGSSLMFLKPGDRIPVSELNKGIVIQSG 134

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND S A  ++++GS+  F  LM+N AK + + NT +    GL    Q +TARD A+LG  
Sbjct: 135 NDASIALADYVAGSQDSFVSLMNNYAKALNLTNTHFLTVHGLDAPGQYSTARDMALLGQA 194

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYK 259
           L ++ P+ Y     ++F + N    N N+LL   + N+DG+KTG+T  +G N+V S    
Sbjct: 195 LIRDVPEEYALHKEKEFTFNNIRQPNRNRLLWSTNLNVDGVKTGHTNGAGHNLVASATEG 254

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFL 288
           +  +++VV+G  T   R +++ +L+T   
Sbjct: 255 NMRLISVVLGAQTDSIRFRESEKLLTWGF 283


>gi|261343387|ref|ZP_05971032.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rustigianii
           DSM 4541]
 gi|282568528|gb|EFB74063.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rustigianii
           DSM 4541]
          Length = 401

 Score =  298 bits (764), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 86/326 (26%), Positives = 161/326 (49%), Gaps = 23/326 (7%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTG-FKQDEPRYPASLTKMMTL 86
           +G  + + +   + A++    P+  +   +++D +  ++      DE   PASLTK+MT 
Sbjct: 15  IGLSMLVVMSSSAYAAQTPVAPQIDAKAFVLMDYDSGKILASSHPDERLDPASLTKIMTS 74

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSA 140
           Y++ + +++ K+     + VS+ A        +  S ++LK K   +       ++ +S 
Sbjct: 75  YVVGQAVKAGKITPQDMVTVSEAAWATGNPVLKGSSLMFLKPKDQVSVLDLNKGIVIQSG 134

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND S A  E+++GS++ F  LM++  +KIG+ NT +K   GL  + Q +TARD A+L   
Sbjct: 135 NDASIALAEYVAGSQESFVDLMNSYVQKIGLTNTHFKTVHGLDSEGQYSTARDMAVLAQA 194

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYK 259
           L ++ P  Y     ++F + N    N N+LL   +  +DG+KTG+T  +G N+V S    
Sbjct: 195 LIRDVPDEYILHKEKEFTFNNIRQPNRNRLLWSQNLKVDGVKTGHTSGAGHNLVASATDG 254

Query: 260 DDPIVAVVMGMPTSQERDQKALELITS---FLEKKT-LKHQQTHRKDNL-------SSTS 308
              +++VV+G P+ + R  ++ +L+T    F E  T +K     +K  +           
Sbjct: 255 PMRLISVVLGAPSDKVRFSESEKLLTWGFRFFETVTPIKGDAVLQKQRVWFGDISEVPLG 314

Query: 309 LKKSLMIKKLKRTYSQFKKIDAKAHS 334
           ++K + +   K       K+D K  S
Sbjct: 315 VEKDVAVTIPKGQLQNL-KVDIKLDS 339


>gi|163857632|ref|YP_001631930.1| penicillin-binding protein precursor [Bordetella petrii DSM 12804]
 gi|163261360|emb|CAP43662.1| penicillin-binding protein precursor [Bordetella petrii]
          Length = 371

 Score =  298 bits (763), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 78/267 (29%), Positives = 137/267 (51%), Gaps = 9/267 (3%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           ++ +  + A         + +++D    Q M  F  D    PASLTK+MT Y++F+ L+ 
Sbjct: 1   MASLASAQAQVAPPVTAKAWMLLDATSGQEMASFNADTRVEPASLTKVMTAYLVFQALRD 60

Query: 96  KKLHLNTQIPVSKTAATQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            +L     + VS  A    P  SK++L+     +    +  L+ +S ND +    E +SG
Sbjct: 61  GRLSTQQLVTVSTRAWKVAPGSSKMFLEPGKRVSVNDLLFGLLVQSGNDAAIVLAEAVSG 120

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF- 212
           S + F   M+ +A ++G+++T + +  GL D    +TARD A+L   L +++P  YK + 
Sbjct: 121 SVEAFVQRMNQQAAQMGLRDTHFASPHGLPDPGTYSTARDLALLARRLVRDYPDLYKTYD 180

Query: 213 SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD----DPIVAVVM 268
           S R F Y N    N N+LL    ++DG+KTG+T  +G+ ++ S    D      +++VVM
Sbjct: 181 SARTFTYNNISQPNRNRLLWLDPSVDGLKTGHTDAAGYCLIASAERPDGQSRRRLISVVM 240

Query: 269 GMPTSQERDQKALELITSFL-EKKTLK 294
           G  + + R +++  L+       KT+K
Sbjct: 241 GTASDKLRTEESRVLLNWGFQNFKTIK 267


>gi|227329429|ref|ZP_03833453.1| penicillin-binding protein 6 [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 401

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 80/269 (29%), Positives = 141/269 (52%), Gaps = 11/269 (4%)

Query: 31  MGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTL 86
           +G +L + ++  + A +L A P     + I+ID +  ++      DE   PASLTK+M  
Sbjct: 15  VGTVLLVGLVPFTYAEQLPAVPQIDAKAYILIDHHSGKVLAESNADERLDPASLTKIMAS 74

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSA 140
           Y+I + ++S K+    ++ V K A        +  S ++LK        +    ++ +S 
Sbjct: 75  YVIGQAIKSGKIRPTDEVTVGKDAWATGNPALRGSSLMFLKPGDRIPVSELNKGIVIQSG 134

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND S A  ++++GS+  F  LM+N AK + + NT +    GL    Q +TARD A+LG  
Sbjct: 135 NDASIALADYVAGSQDAFVSLMNNYAKALNLTNTNFLTVHGLDAPGQYSTARDMALLGQA 194

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYK 259
           L ++ P+ Y     ++F + N    N N+LL   + N+DG+KTG+T  +G N+V S    
Sbjct: 195 LIRDVPEEYALHKEKEFTFNNIRQPNRNRLLWSTNLNVDGVKTGHTNGAGHNLVASATEG 254

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFL 288
           +  +++VV+G  T   R +++ +L+T   
Sbjct: 255 NMRLISVVLGAQTDAIRFRESEKLLTWGF 283


>gi|116748745|ref|YP_845432.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697809|gb|ABK16997.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Syntrophobacter fumaroxidans MPOB]
          Length = 422

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 81/242 (33%), Positives = 137/242 (56%), Gaps = 1/242 (0%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I+++V+   +   +  DE   PAS TK+ +LY++FE L+  ++HLN +I +S+ A 
Sbjct: 37  AKSAILMEVSTGAILFEQNADEVIEPASFTKIASLYLVFEALRQGRIHLNDEIWISEAAW 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               SK+++   T    E+ +  +   S ND   A  E +SGS + F   M+ K +++GM
Sbjct: 97  RTGGSKMFVGVGTKVPLEELLKGIAVVSGNDACVAAAEHVSGSAETFVEAMNRKTRELGM 156

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
            ++ + N  GL  + Q TTARD AIL     + FP+  +Y S+R++ Y N +  N N LL
Sbjct: 157 THSRFLNPHGLPVEGQTTTARDMAILDSAYLRQFPESLQYHSMREYTYNNIVQYNRNHLL 216

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
            K  ++DG+KTGY   +G+++  + +     ++AVVMG  T   R+++AL+L+       
Sbjct: 217 LKDPSVDGLKTGYVAAAGYHLAATAKRDGMRLLAVVMGAGTPAVREREALKLLNYGFRYY 276

Query: 292 TL 293
           TL
Sbjct: 277 TL 278


>gi|316935787|ref|YP_004110769.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris DX-1]
 gi|315603501|gb|ADU46036.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris DX-1]
          Length = 483

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 92/311 (29%), Positives = 157/311 (50%), Gaps = 8/311 (2%)

Query: 32  GKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIF 90
             +  ++  ++S+     A    + ++I+ +  ++        P +PASLTK+MT+Y+  
Sbjct: 13  SFLAIVAAALLSLTVLPRAASAEALLLIEADTGKVLQADNATYPWHPASLTKLMTMYVTL 72

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           + ++  +L  ++ + VS  AA Q+PSK+     T  T +  +  ++ +SAND++    E 
Sbjct: 73  QAVKQGRLTQDSLLTVSPIAAAQSPSKMGFGPGTQITVDNALKMMMVKSANDMAVVLAEG 132

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           + GS   F+ +M++ A ++GM  T Y N +GL    Q+T+ARDQAIL   + ++ P+Y  
Sbjct: 133 VGGSVDGFSAMMNDTAARLGMTQTRYVNPNGLPADEQVTSARDQAILARAVIRDLPEYEY 192

Query: 211 YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           Y  I   R+  R+  N NKL+ +    DG KTG+   SG+N+V S       ++AVV+G 
Sbjct: 193 YVHIPAIRFGKRVTRNFNKLIGRYPGADGFKTGFICASGYNLVASATRNGRRLIAVVLGA 252

Query: 271 PTSQERDQKALELITSFLEKKTLKH--QQTHRKDNLS-----STSLKKSLMIKKLKRTYS 323
            + Q+R  KA +L+       TL          DNL+        L+  +   K KR  S
Sbjct: 253 NSGQDRAVKAAQLLERGFSTNTLAWLTPSLGTVDNLAPIAATPPDLRDEMCGPKRKRPAS 312

Query: 324 QFKKIDAKAHS 334
              +  A A S
Sbjct: 313 DEDETVANALS 323


>gi|297581327|ref|ZP_06943251.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC385]
 gi|297534643|gb|EFH73480.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC385]
          Length = 391

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 86/263 (32%), Positives = 140/263 (53%), Gaps = 8/263 (3%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
           +    F S I+   A ++ AK     +++D +  ++   K+ D    PASLTKMMT Y+I
Sbjct: 20  LSSTAFASPIVTPDAPQIAAK---GYVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVI 76

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            + ++   + LN  + +SK A  +N    SK++++  T          +I +S ND   A
Sbjct: 77  GQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVA 136

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E ++G+E  F  LM+  A  +GM+N+ + N+ GL D N  +T  D A+LG  L ++ P
Sbjct: 137 MAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVP 196

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           + Y  +S +KF Y      N N LL  K  N+DGIKTG+T  +G+N+V+S    +  +VA
Sbjct: 197 EEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVA 256

Query: 266 VVMGMPTSQERDQKALELITSFL 288
           VVMG      R  ++ +L++   
Sbjct: 257 VVMGTDNENARKAESKKLLSYGF 279


>gi|197284564|ref|YP_002150436.1| penicillin-binding protein [Proteus mirabilis HI4320]
 gi|194682051|emb|CAR41559.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase)
           [Proteus mirabilis HI4320]
          Length = 400

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 153/317 (48%), Gaps = 20/317 (6%)

Query: 31  MGKILFLSIIMISMASELHAK-PKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYI 88
           MG +L +S    ++ + +  +    S +++D N  ++    K +E   PASLTK+M+ Y+
Sbjct: 16  MGLLLIISSPTFAVNNPVPPQIEAKSYVLMDYNSGKILASEKPEERLDPASLTKIMSSYV 75

Query: 89  IFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSAND 142
           + + ++  ++  +  + V + A        +  S ++LK             ++ +S ND
Sbjct: 76  VGQAIKEGRMSPDDIVIVGRNAWATGNPVLKGSSLMFLKPGDRVKVIDLNRGMVIQSGND 135

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            S A  E ++GS++ F  LM+  A  +G++NT +K   GL  + Q TTA+D A+L   + 
Sbjct: 136 ASIALAEHVAGSQETFVDLMNTYAANLGLKNTHFKTVHGLDSEGQYTTAQDMALLTAAMI 195

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           ++ P  Y     ++F + N    N N+LL  K  N+DG+KTG+T  +G+N+V+S    + 
Sbjct: 196 RDVPSEYDIHKEKEFTFNNIRQPNRNRLLWNKNMNVDGVKTGHTNGAGYNLVSSATEGNM 255

Query: 262 PIVAVVMGMPTSQERDQKALELITS---FLEKKT-------LKHQQTHRKDNL-SSTSLK 310
            ++AVV+G P+ + R  ++  L+     F E  T       L  Q+    D    +  + 
Sbjct: 256 RLIAVVLGAPSDKVRFAESERLLGWGFRFFETVTPVKENVPLTTQKVWYGDKGEVALGVA 315

Query: 311 KSLMIKKLKRTYSQFKK 327
           K   I   K      K 
Sbjct: 316 KDASITIPKGELKNLKA 332


>gi|90578587|ref|ZP_01234397.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14]
 gi|90439420|gb|EAS64601.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14]
          Length = 391

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 81/273 (29%), Positives = 142/273 (52%), Gaps = 5/273 (1%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
            ++    +  +  + F S+   S+  +         +++D N  Q+   K  +E   PAS
Sbjct: 6   PLFSLVGVTALCTVSFSSLAAPSVIPDAPTLSAKGYVLMDYNTGQVLVEKNANEKLNPAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALI 136
           LTK+MT Y+  + ++   +  +  + +S+ A  +N    SK++++  +          LI
Sbjct: 66  LTKLMTSYVAGQEIKQGNISKDDIVVISRNAWARNFPDSSKMFIEVGSEVPLMDLFRGLI 125

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E ++GSE+ F  LM++ AKK+GM +T + N  GL   +  TT  D A+
Sbjct: 126 IQSGNDASVALAEHVAGSEQAFVGLMNSWAKKLGMNSTHFANPHGLDHSDLYTTPYDIAL 185

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTS 255
           LG  L ++ P  Y  +S + F Y N    N N LL +K  N+DG+KTGYT  +G+++ +S
Sbjct: 186 LGQALIRDLPSIYPLYSEKSFTYNNITQRNRNGLLYDKSMNVDGMKTGYTSGAGYSLTSS 245

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
               D  ++AVVMG  +++ R+ ++  L+    
Sbjct: 246 ATEGDMRLIAVVMGTKSTKTRESESKALLNYGF 278


>gi|254464797|ref|ZP_05078208.1| D-alanyl-D-alanine carboxypeptidase protein [Rhodobacterales
           bacterium Y4I]
 gi|206685705|gb|EDZ46187.1| D-alanyl-D-alanine carboxypeptidase protein [Rhodobacterales
           bacterium Y4I]
          Length = 555

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 103/306 (33%), Positives = 157/306 (51%), Gaps = 4/306 (1%)

Query: 18  PYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           P    Y +         + L+++ + +A +      Y+++VID    ++      D   +
Sbjct: 9   PASGRYFRTRFLWAAAGILLAVLGLWLAPQRAQAAPYAAMVIDARTGEVLHSSNADTRLH 68

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTKMMTLYI FE +++ ++ L+T++ +S+ AA + PSKL LK          I A  
Sbjct: 69  PASLTKMMTLYIAFEAVRNGEITLDTKVKISRNAAAEPPSKLGLKPGQRIAFRYLIRAAA 128

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +SAND +TA GE +SGSE  F   M+  AK +GM  T +KNA GL     ++TA D   
Sbjct: 129 VKSANDAATAIGETLSGSEAAFTRRMNRTAKALGMTRTTFKNAHGLTASGHLSTASDMTT 188

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           LG  L  ++P+YY  FS R      R + N N +LL      DGIKTGYTR +GFN+V S
Sbjct: 189 LGRHLLYDYPEYYNLFSRRSTDAGIREVPNTNRRLLAAYRGADGIKTGYTRAAGFNLVAS 248

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMI 315
            +  D+ I+A V G  +S  R+ K  EL+     +     +   RK    +     ++++
Sbjct: 249 AKRGDERIIATVFGGKSSTSRNAKVAELLDLGFRRAP--SRAALRKPQRPAYQGAGNIVV 306

Query: 316 KKLKRT 321
            +    
Sbjct: 307 AEADDE 312


>gi|86748470|ref|YP_484966.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris HaA2]
 gi|86571498|gb|ABD06055.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris HaA2]
          Length = 499

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 86/290 (29%), Positives = 148/290 (51%), Gaps = 8/290 (2%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
               + ++++ +  ++   +    P YPAS+TK+MT Y+  + ++  +L L++ + VS  
Sbjct: 31  ASAEALLLVEADTGKVLQAENATYPWYPASVTKIMTAYVTLKAVKEGRLTLDSLLTVSPV 90

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           AA Q+PSK+     T  T +  +  ++ +SAND++    E + GS   F+ +M+  A+++
Sbjct: 91  AAAQSPSKMGFAPGTLITVDNALKMMMVKSANDIAVVLAEGVGGSVDGFSDMMNTTAQRL 150

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM  T Y N +GL  + Q+T+ARD AIL   + ++ P+Y  +  I   R+  R+  N NK
Sbjct: 151 GMTQTHYVNPNGLPAEGQVTSARDLAILARAVLRDLPEYEHFMHIPAIRFGKRVTHNFNK 210

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           L+ +    DG KTG+   SG+N+V S       ++AVV+G  + Q+R  KA +L+     
Sbjct: 211 LIGRYPGADGFKTGFICASGYNLVASATRNGRRLIAVVLGANSGQDRAVKAAQLLERGFS 270

Query: 290 KKTLKH--QQTHRKDNLSSTS-----LKKSLMIKKLKRTYSQFKKIDAKA 332
             TL          DNL+        L+  +   K KR  S   +  A  
Sbjct: 271 ANTLAWLTPSLGTVDNLAPIDATPPNLRDEMCGPKRKRPASDEDEQVASV 320


>gi|227356744|ref|ZP_03841129.1| D-alanyl-D-alanine carboxypeptidase [Proteus mirabilis ATCC 29906]
 gi|227163034|gb|EEI47969.1| D-alanyl-D-alanine carboxypeptidase [Proteus mirabilis ATCC 29906]
          Length = 400

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 153/317 (48%), Gaps = 20/317 (6%)

Query: 31  MGKILFLSIIMISMASELHAK-PKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYI 88
           MG +L +S    ++ + +  +    S +++D N  ++    K +E   PASLTK+M+ Y+
Sbjct: 16  MGLLLIISSPTFAVNNPVPPQIEAKSYVLMDYNSGKILASEKPEERLDPASLTKIMSSYV 75

Query: 89  IFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSAND 142
           + + ++  ++  +  + V + A        +  S ++LK             ++ +S ND
Sbjct: 76  VGQAIKEGRMSPDDIVIVGRNAWATGNPVLKGSSLMFLKPGDRVKVIDLNRGMVIQSGND 135

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            S A  E ++GS++ F  LM+  A  +G++NT +K   GL  + Q TTA+D A+L   + 
Sbjct: 136 ASIALAEHVAGSQETFVDLMNTYAANLGLKNTHFKTVHGLDSEGQYTTAQDMALLTAAMI 195

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           ++ P  Y     ++F + N    N N+LL  K  N+DG+KTG+T  +G+N+V+S    + 
Sbjct: 196 RDVPSEYDIHKEKEFTFNNIRQPNRNRLLWNKNMNVDGVKTGHTNGAGYNLVSSATEGNM 255

Query: 262 PIVAVVMGMPTSQERDQKALELITS---FLEKKT-------LKHQQTHRKDNL-SSTSLK 310
            ++AVV+G P+ + R  ++  L+     F E  T       L  Q+    D    +  + 
Sbjct: 256 RLIAVVLGAPSDKVRFAESERLLGWGFRFFETVTPVKENVPLTTQKVWYGDKGEVALGVA 315

Query: 311 KSLMIKKLKRTYSQFKK 327
           K   I   K      K 
Sbjct: 316 KDASITIPKGELKNLKA 332


>gi|188025727|ref|ZP_02959597.2| hypothetical protein PROSTU_01468 [Providencia stuartii ATCC 25827]
 gi|188020262|gb|EDU58302.1| hypothetical protein PROSTU_01468 [Providencia stuartii ATCC 25827]
          Length = 402

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 87/287 (30%), Positives = 148/287 (51%), Gaps = 17/287 (5%)

Query: 29  QLMGKILFLSIIMISMA-----SELHAKP---KYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
            L+G  L  ++   +       S + A P     + I+ID N  ++   K  D+ R PAS
Sbjct: 13  TLLGASLLFTMTQANANEPFPNSPVPAVPEIDAEAYILIDYNSGKVLAEKNADQRRDPAS 72

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGIL 133
           LTKMMT Y+I + ++S K+     + V++ A        +  S ++LK     +  Q   
Sbjct: 73  LTKMMTSYVIGQAIKSGKIGAEDIVTVNEDAWATGNPIFKGSSLMFLKPGDRVSVSQLTR 132

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +  +S ND   A  ++++G +  F  LM+    K+G+QNT ++   GL  + Q ++ARD
Sbjct: 133 GINLQSGNDACVAMADYVAGDQANFIQLMNGYVSKLGLQNTHFQTVHGLDAEGQYSSARD 192

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNI 252
            A+LG  L ++ P  Y  +  ++F + N   TN N LL  K  ++DGIKTG+T  +G+N+
Sbjct: 193 MALLGQALIRDVPDEYAIYKEKEFTFNNIRQTNRNGLLWDKSLSVDGIKTGHTNAAGYNL 252

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE-KKTLKHQQT 298
           V S       +++VVMG  + + RD ++ +L+T      +T+K  Q 
Sbjct: 253 VASATEGQMRLISVVMGGKSMKGRDAESKKLLTYGFRFYETVKPLQA 299


>gi|258621965|ref|ZP_05716994.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM573]
 gi|258585718|gb|EEW10438.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM573]
          Length = 391

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 85/263 (32%), Positives = 141/263 (53%), Gaps = 8/263 (3%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
           +    F S I++  A ++ AK     +++D +  ++   K+ +    PASLTKMMT Y+I
Sbjct: 20  LSSTAFASPIVVPDAPQIAAK---GYVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVI 76

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            + ++   + LN  + +SK A  +N    SK++++  T          +I +S ND   A
Sbjct: 77  GQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFIEVGTTVKVSDLNRGIIIQSGNDACVA 136

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E ++GSE  F  LM+  A  +GM+++ + N+ GL D N  +T  D A+LG  L ++ P
Sbjct: 137 MAEHVAGSEDAFVDLMNAWASSLGMKDSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVP 196

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           + Y  +S +KF Y      N N LL  K  N+DGIKTG+T  +G+N+V+S    +  +VA
Sbjct: 197 EEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVA 256

Query: 266 VVMGMPTSQERDQKALELITSFL 288
           VVMG      R  ++ +L++   
Sbjct: 257 VVMGTDNENARKAESKKLLSYGF 279


>gi|258625415|ref|ZP_05720309.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM603]
 gi|258582326|gb|EEW07181.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM603]
          Length = 391

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 85/263 (32%), Positives = 141/263 (53%), Gaps = 8/263 (3%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
           +    F S I++  A ++ AK     +++D +  ++   K+ +    PASLTKMMT Y+I
Sbjct: 20  LSSTTFASPIVVPDAPQIAAK---GYVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVI 76

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            + ++   + LN  + +SK A  +N    SK++++  T          +I +S ND   A
Sbjct: 77  GQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFIEVGTTVKVSDLNRGIIIQSGNDACVA 136

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E ++GSE  F  LM+  A  +GM+++ + N+ GL D N  +T  D A+LG  L ++ P
Sbjct: 137 MAEHVAGSEDAFVDLMNAWASSLGMKDSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVP 196

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           + Y  +S +KF Y      N N LL  K  N+DGIKTG+T  +G+N+V+S    +  +VA
Sbjct: 197 EEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVA 256

Query: 266 VVMGMPTSQERDQKALELITSFL 288
           VVMG      R  ++ +L++   
Sbjct: 257 VVMGTDNENARKAESKKLLSYGF 279


>gi|229525558|ref|ZP_04414963.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae bv. albensis
           VL426]
 gi|229339139|gb|EEO04156.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae bv. albensis
           VL426]
          Length = 391

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 86/263 (32%), Positives = 140/263 (53%), Gaps = 8/263 (3%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
           +    F S I+   A ++ AK     +++D +  ++   K+ D    PASLTKMMT Y+I
Sbjct: 20  LSSTAFASPIVTPDAPQIAAK---GYVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVI 76

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            + ++   + LN  + +SK A  +N    SK++++  T          +I +S ND   A
Sbjct: 77  GQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVA 136

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E ++G+E  F  LM+  A  +GM+N+ + N+ GL D N  +T  D A+LG  L ++ P
Sbjct: 137 MAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVP 196

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           + Y  +S +KF Y      N N LL  K  N+DGIKTG+T  +G+N+V+S    +  +VA
Sbjct: 197 EEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVA 256

Query: 266 VVMGMPTSQERDQKALELITSFL 288
           VVMG      R  ++ +L++   
Sbjct: 257 VVMGTDNENARKAESKKLLSYGF 279


>gi|88705586|ref|ZP_01103296.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
           [Congregibacter litoralis KT71]
 gi|88700099|gb|EAQ97208.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
           [Congregibacter litoralis KT71]
          Length = 372

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 81/258 (31%), Positives = 142/258 (55%), Gaps = 9/258 (3%)

Query: 40  IMISMASELHAKPKYSS---IVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           + +S  + + A P+ ++   +++D N   +      DE   PASLTK+MT Y++   +++
Sbjct: 1   MAVSAQNIVPAPPEVAARAYLLVDANSGAVLVESNADEQLPPASLTKLMTAYVLASEIEA 60

Query: 96  KKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
            ++  + Q+ VS+ A +QNP     S ++++ +   T  Q    ++  S ND + A  E 
Sbjct: 61  GRVSRDDQVTVSRNAWSQNPVFNGSSLMWIEPRKPVTIGQLEQGVVISSGNDATVAVAEH 120

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           I+GSE  FA LM+  A ++G+  T + N+ GL     +TTARD A L   +   FP++YK
Sbjct: 121 IAGSEAAFADLMNKHAAELGLHGTYFANSHGLPHPQHLTTARDLATLAKNIIARFPEHYK 180

Query: 211 YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
            +S R + Y +    N NKLL +  ++DG+KTGYTR +G+ +V S       +++VVMG 
Sbjct: 181 VYSQRDYTYNDIKQYNRNKLLGEDPSVDGLKTGYTREAGYGLVASAERNGMRLISVVMGT 240

Query: 271 PTSQERDQKALELITSFL 288
            +++ R ++   L+    
Sbjct: 241 ESTRARARETRSLLNYGF 258


>gi|260774871|ref|ZP_05883772.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609126|gb|EEX35284.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 392

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 87/258 (33%), Positives = 141/258 (54%), Gaps = 8/258 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           F + I++  A ++ AK     +++D N  ++   K+ +    PASLTKMMT Y+I + L+
Sbjct: 26  FATPIVVPDAPQIAAK---GYVLMDYNSGKILAEKEMNTKLSPASLTKMMTSYVIGQELE 82

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              + L   + +SK A  +N    SK++++  T    E+    +I +S ND   A  E I
Sbjct: 83  RGNISLQDDVTISKNAWAKNFPDSSKMFIEVGTTVKVEELNRGIIVQSGNDACVAMAEHI 142

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  F  LM+  A  +GM++T + N  GL + N  +T  D A+LG  L ++ P  Y+ 
Sbjct: 143 AGSEDAFVDLMNAWADTLGMKDTHFANVHGLDNPNLYSTPYDMALLGQALIRDVPDEYRI 202

Query: 212 FSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL  K  N+DGIKTG+T N+G+++V+S       +VAVVMG 
Sbjct: 203 YSEKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLVAVVMGT 262

Query: 271 PTSQERDQKALELITSFL 288
             +  R  ++ +L++   
Sbjct: 263 KNANARKSESKKLLSYGF 280


>gi|121728034|ref|ZP_01681072.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V52]
 gi|147675663|ref|YP_001216421.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395]
 gi|229512959|ref|ZP_04402425.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TMA 21]
 gi|229523260|ref|ZP_04412667.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TM 11079-80]
 gi|229529956|ref|ZP_04419346.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 12129(1)]
 gi|254225715|ref|ZP_04919321.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V51]
 gi|254285618|ref|ZP_04960582.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae AM-19226]
 gi|121629663|gb|EAX62083.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V52]
 gi|125621723|gb|EAZ50051.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V51]
 gi|146317546|gb|ABQ22085.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395]
 gi|150424480|gb|EDN16417.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae AM-19226]
 gi|227012764|gb|ACP08974.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395]
 gi|229333730|gb|EEN99216.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 12129(1)]
 gi|229339623|gb|EEO04638.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TM 11079-80]
 gi|229349852|gb|EEO14806.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TMA 21]
 gi|327483673|gb|AEA78080.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae LMA3894-4]
          Length = 391

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 86/263 (32%), Positives = 140/263 (53%), Gaps = 8/263 (3%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
           +    F S I+   A ++ AK     +++D +  ++   K+ D    PASLTKMMT Y+I
Sbjct: 20  LSSTAFASPIVTPDAPQIAAK---GYVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVI 76

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            + ++   + LN  + +SK A  +N    SK++++  T          +I +S ND   A
Sbjct: 77  GQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVA 136

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E ++G+E  F  LM+  A  +GM+N+ + N+ GL D N  +T  D A+LG  L ++ P
Sbjct: 137 MAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVP 196

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           + Y  +S +KF Y      N N LL  K  N+DGIKTG+T  +G+N+V+S    +  +VA
Sbjct: 197 EEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVA 256

Query: 266 VVMGMPTSQERDQKALELITSFL 288
           VVMG      R  ++ +L++   
Sbjct: 257 VVMGTDNENARKAESKKLLSYGF 279


>gi|28875449|gb|AAO59939.1| DacD [uncultured bacterium]
          Length = 421

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 84/352 (23%), Positives = 164/352 (46%), Gaps = 27/352 (7%)

Query: 7   QSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSII------MISMASELHAKPKYSSIVID 60
           ++S K+T ++     + ++R + +   +L +S         +S A +  A    + +++D
Sbjct: 17  RTSVKRTAISPFPEDMLLKRRLFIAASLLTMSFSPAWASDAVSFAPQPPAITAGAWVLMD 76

Query: 61  VNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------ 113
               Q+     + + R PASLTK+MT Y++   + SK++     + V + A  +      
Sbjct: 77  YTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSKRISPTDIVTVGRDAWAKDNPVFV 136

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S ++LKE    +       LI  S ND   A  ++I+G + +F  +M+N A+K+ +Q+
Sbjct: 137 GSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNNYAQKLNLQD 196

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN- 232
           T ++   GL    Q ++A D A+L   +    P +Y  +S +   +      N N LL  
Sbjct: 197 THFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPDFYHMYSEKSLTWNGITQQNRNGLLWD 256

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS----FL 288
           K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R+ +A +L+      F 
Sbjct: 257 KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAESAKGREDQARKLLQWGQHNFD 316

Query: 289 EKKTLKHQQTHRKDNLSSTSLKKS---------LMIKKLKRTYSQFKKIDAK 331
             + L+  +    + +     +K          + + K +    + K +  K
Sbjct: 317 TVQVLRSGKQVGTERIWYGDKEKISLGTEQDFWMALPKAEVPNIKAKYVLDK 368


>gi|153213833|ref|ZP_01949039.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 1587]
 gi|229510878|ref|ZP_04400357.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33]
 gi|229517999|ref|ZP_04407443.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC9]
 gi|229608471|ref|YP_002879119.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MJ-1236]
 gi|254848079|ref|ZP_05237429.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MO10]
 gi|124115667|gb|EAY34487.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 1587]
 gi|229344714|gb|EEO09688.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC9]
 gi|229350843|gb|EEO15784.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33]
 gi|229371126|gb|ACQ61549.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MJ-1236]
 gi|254843784|gb|EET22198.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MO10]
          Length = 391

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 86/263 (32%), Positives = 140/263 (53%), Gaps = 8/263 (3%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
           +    F S I+   A ++ AK     +++D +  ++   K+ D    PASLTKMMT Y+I
Sbjct: 20  LSSTAFASPIVTPDAPQIAAK---GYVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVI 76

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            + ++   + LN  + +SK A  +N    SK++++  T          +I +S ND   A
Sbjct: 77  GQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVA 136

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E ++G+E  F  LM+  A  +GM+N+ + N+ GL D N  +T  D A+LG  L ++ P
Sbjct: 137 MAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVP 196

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           + Y  +S +KF Y      N N LL  K  N+DGIKTG+T  +G+N+V+S    +  +VA
Sbjct: 197 EEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVA 256

Query: 266 VVMGMPTSQERDQKALELITSFL 288
           VVMG      R  ++ +L++   
Sbjct: 257 VVMGTDNENARKAESKKLLSYGF 279


>gi|238753434|ref|ZP_04614797.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia ruckeri ATCC
           29473]
 gi|238708387|gb|EEQ00742.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia ruckeri ATCC
           29473]
          Length = 401

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 79/273 (28%), Positives = 143/273 (52%), Gaps = 10/273 (3%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP--KYSSIVIDVNKNQMTGF-KQDEPRYPASLTK 82
           +N+     +L L++  +  A E  A P    + +++D N  ++      D+   PASLTK
Sbjct: 11  KNVTFSAGLLLLTMPAVRAADEQPAPPIDAKAYVLMDFNSGKILTQGNADQRLDPASLTK 70

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALI 136
           +M+ Y+I + +++ K+H +  + V K A        +  S ++LK             ++
Sbjct: 71  IMSSYVIGQAIKAGKVHPDDMVTVGKDAWATGNPVLRGSSLMFLKPGDQVKLLDLNKGIV 130

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  ++I+GS+  F  LM+N AK +G+ NT +    GL  + Q +TARD A+
Sbjct: 131 IQSGNDASIALADYIAGSQDSFVGLMNNYAKALGLDNTHFLTVHGLDAEGQYSTARDMAV 190

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTS 255
           L   L ++ P+ Y     ++F + N    N N+LL   + N+DG+KTG+T  +G N+V S
Sbjct: 191 LAQALIRDVPEEYALHKEKEFTFNNIRQINRNRLLWNTNLNVDGVKTGHTAGAGHNLVAS 250

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
                  +++VV+G P+ + R  ++ +L++   
Sbjct: 251 ATDGPMRLISVVLGAPSDRVRFSESEKLLSWGF 283


>gi|89076565|ref|ZP_01162873.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium sp.
           SKA34]
 gi|89047757|gb|EAR53356.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium sp.
           SKA34]
          Length = 391

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 81/273 (29%), Positives = 142/273 (52%), Gaps = 5/273 (1%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
            ++    +  +  + F S+   S+  +         +++D N  Q+   K  +E   PAS
Sbjct: 6   PLFSLVGVTALCTVSFSSLAAPSVIPDAPTLSAKGYVLMDYNTGQVLVEKNANEKLNPAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALI 136
           LTK+MT Y+  + ++   +  +  + +S+ A  +N    SK++++  +          LI
Sbjct: 66  LTKLMTSYVAGQEIKQGNISKDDIVVISRNAWARNFPDSSKMFIEVGSEVPLMDLFRGLI 125

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E ++GSE+ F  LM++ AKK+GM +T + N  GL   +  TT  D A+
Sbjct: 126 IQSGNDASVALAEHVAGSEQAFVGLMNSWAKKLGMNSTHFANPHGLDHSDLYTTPYDIAL 185

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTS 255
           LG  L ++ P  Y  +S + F Y N    N N LL +K  N+DG+KTGYT  +G+++ +S
Sbjct: 186 LGQALIRDLPSIYPLYSEKSFTYNNITQRNRNGLLYDKSMNVDGMKTGYTSGAGYSLTSS 245

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
               D  ++AVVMG  +++ R+ ++  L+    
Sbjct: 246 ATEGDMRLIAVVMGTKSTKTRESESKALLNYGF 278


>gi|319944900|ref|ZP_08019162.1| D-alanyl-D-alanine carboxypeptidase DacA [Lautropia mirabilis ATCC
           51599]
 gi|319741470|gb|EFV93895.1| D-alanyl-D-alanine carboxypeptidase DacA [Lautropia mirabilis ATCC
           51599]
          Length = 411

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 92/304 (30%), Positives = 157/304 (51%), Gaps = 17/304 (5%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP--KYSSIVIDVNKNQMTGFKQ- 71
           ++     +  QR   LM          ++MA  L        S  + DV+ N +   +  
Sbjct: 13  VSASLPRLLRQRLSALMLATSLGLAAPVAMAQSLPPPDIGGRSWFLFDVSTNTVLYSQAP 72

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE   PASLTK+MT Y++FE L+   L+++T+ PVS+ A     S++++  +   T E+ 
Sbjct: 73  DERVEPASLTKLMTAYVVFEALRDGTLNMDTRPPVSQAAYKAIGSRMFVDPRKPATVEEL 132

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  LI +S ND +    E +SGSE+ FA  M+ +A++IGM+N+ + NASGL      +TA
Sbjct: 133 LHGLIIQSGNDAAIILAEAVSGSEEAFAQQMNAEARRIGMKNSHFVNASGLPAPEHYSTA 192

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           RD A+L   + K FP YY+ +S +++ +      N N+LL    ++DG+KTG+T  +G+ 
Sbjct: 193 RDMALLATRIIKEFPDYYRMYSEKEYTFNGVRQPNRNRLLYIDPSVDGMKTGHTDAAGYC 252

Query: 252 IVTSLRYKD------------DPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTH 299
           +V S   +               I++V+MG  T   R  ++ +L+    +    +  Q +
Sbjct: 253 LVASAHREQRNAADPNGSPFSRRILSVLMGATTDATRATESQKLLNYGFQN--FEALQLY 310

Query: 300 RKDN 303
           RK+ 
Sbjct: 311 RKNQ 314


>gi|251789994|ref|YP_003004715.1| beta-lactamase [Dickeya zeae Ech1591]
 gi|247538615|gb|ACT07236.1| Beta-lactamase [Dickeya zeae Ech1591]
          Length = 402

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 139/287 (48%), Gaps = 14/287 (4%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRY-PASLT 81
           R+  +    + + +     A +    P+  +   I+ID    ++      + R  PASLT
Sbjct: 11  RHAVVAATGVLMVVSSGLRAEQTPPPPQIDAKAFILIDSASGRVLAESNADTRLDPASLT 70

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILAL 135
           K+M+ Y+I + ++  K+    ++ V K A        +  S ++LK     +       +
Sbjct: 71  KIMSSYVIGQAIKVGKIKPEDKVTVGKDAWATGNPSLRGSSLMFLKPGDQISVSDLNKGM 130

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + +S ND S A  ++++GS+  F  LM+  A  +G+ NT +    GL    Q +TARD A
Sbjct: 131 VIQSGNDASIALADYVAGSQDAFVSLMNQYALNLGLTNTHFLTVHGLDTPGQYSTARDMA 190

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVT 254
            L   L ++ P  Y   S ++F + N    N N+LL   +  +DG+KTGYT  +G ++V 
Sbjct: 191 RLTQALIRDVPSEYALHSEKEFTFNNIRQPNRNRLLWSGNLRVDGVKTGYTDGAGHSLVA 250

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITS---FLEKKTLKHQQT 298
           S    D  +++VV+G P+   R +++ +L+T    F E  TL    T
Sbjct: 251 SAVDGDMRLISVVLGAPSDAVRFRESEKLLTWGFRFFETATLVRSDT 297


>gi|153826135|ref|ZP_01978802.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MZO-2]
 gi|149740158|gb|EDM54317.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MZO-2]
          Length = 391

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 86/263 (32%), Positives = 140/263 (53%), Gaps = 8/263 (3%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
           +    F S I+   A ++ AK     +++D +  ++   K+ D    PASLTKMMT Y+I
Sbjct: 20  LSGTAFASPIVTPDAPQIAAK---GYVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVI 76

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            + ++   + LN  + +SK A  +N    SK++++  T          +I +S ND   A
Sbjct: 77  GQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVA 136

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E ++G+E  F  LM+  A  +GM+N+ + N+ GL D N  +T  D A+LG  L ++ P
Sbjct: 137 MAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVP 196

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           + Y  +S +KF Y      N N LL  K  N+DGIKTG+T  +G+N+V+S    +  +VA
Sbjct: 197 EEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVA 256

Query: 266 VVMGMPTSQERDQKALELITSFL 288
           VVMG      R  ++ +L++   
Sbjct: 257 VVMGTDNENARKAESKKLLSYGF 279


>gi|204929188|ref|ZP_03220331.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204321732|gb|EDZ06931.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|322613672|gb|EFY10612.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620243|gb|EFY17112.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623289|gb|EFY20130.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322630494|gb|EFY27263.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632829|gb|EFY29574.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638838|gb|EFY35532.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640341|gb|EFY37000.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647153|gb|EFY43652.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648980|gb|EFY45423.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653886|gb|EFY50210.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660993|gb|EFY57222.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663066|gb|EFY59273.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668511|gb|EFY64666.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673354|gb|EFY69457.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322679140|gb|EFY75194.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683235|gb|EFY79250.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685895|gb|EFY81885.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195182|gb|EFZ80363.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198750|gb|EFZ83850.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202394|gb|EFZ87437.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323209221|gb|EFZ94157.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323209796|gb|EFZ94719.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216122|gb|EGA00852.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220678|gb|EGA05125.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323223727|gb|EGA08034.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231333|gb|EGA15447.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232575|gb|EGA16672.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240982|gb|EGA25022.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245599|gb|EGA29594.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247629|gb|EGA31578.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251071|gb|EGA34945.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323254840|gb|EGA38635.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263363|gb|EGA46897.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266318|gb|EGA49807.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271462|gb|EGA54884.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 390

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 74/278 (26%), Positives = 140/278 (50%), Gaps = 8/278 (2%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPAS 79
            ++I  ++  M     L+   +S A +  A    + +++D    Q+     + + R PAS
Sbjct: 6   RLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +      
Sbjct: 66  LTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSR 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI  S ND   A  ++I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D
Sbjct: 126 GLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYD 185

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNI 252
            A+L   +    P++Y  +S +   +      N N LL  K  +IDG+KTG+T  +G+N+
Sbjct: 186 LAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGYNL 245

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           + S       ++AVVMG  +S+ R+++A +L+   L+ 
Sbjct: 246 IASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGLQN 283


>gi|118591083|ref|ZP_01548482.1| hypothetical protein SIAM614_15692 [Stappia aggregata IAM 12614]
 gi|118436159|gb|EAV42801.1| hypothetical protein SIAM614_15692 [Stappia aggregata IAM 12614]
          Length = 561

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 117/281 (41%), Positives = 167/281 (59%), Gaps = 1/281 (0%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
            +   A PKY+ IV+D    +       D  RYPASLTK+MTLY++FE L++ +L L++ 
Sbjct: 27  PATAMANPKYAGIVVDAKTGKTLYSSSADSYRYPASLTKIMTLYLVFEELEAGRLSLDSN 86

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           + VS  A+ + PSKL LK       +  ILAL+T+SANDV++   E + GSEKKFA  M+
Sbjct: 87  LSVSSYASARPPSKLGLKPGGTIKVKDAILALVTKSANDVASVIAENLGGSEKKFAERMT 146

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI 223
             A++IGM  T ++N  GL D  Q TTARD A LG  +++ FPQYY YF  R ++Y+ R 
Sbjct: 147 RTARQIGMSKTTFRNPHGLPDNGQRTTARDMATLGRAIQERFPQYYGYFKTRAYKYKGRT 206

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
             NHNKLL ++  +DGIKTGY R SGFN+VTS+      IVAVVMG  T   R+ +  +L
Sbjct: 207 YGNHNKLLGRVKGVDGIKTGYIRASGFNLVTSVNRDGRHIVAVVMGGKTGASRNAQMTKL 266

Query: 284 ITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
           I ++L K +   +        +S     ++ +K      ++
Sbjct: 267 INAYLPKASRGPKTAPLIVQNTSEPTFVAVALKNPPLPNTK 307


>gi|90414079|ref|ZP_01222062.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
           profundum 3TCK]
 gi|90324874|gb|EAS41402.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
           profundum 3TCK]
          Length = 391

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 138/253 (54%), Gaps = 8/253 (3%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           ++  A ++ AK   + I++D N  ++      DE  +PASLTKM+T Y+I + ++S  + 
Sbjct: 29  VVPEAPQIAAK---AYILMDYNSGKIIAENNSDERLHPASLTKMLTSYVIGQEIKSGNIS 85

Query: 100 LNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           L+ ++ VS  A  +N    SK++L+     T ++    +I +S ND  TA  E I+GS  
Sbjct: 86  LDDKVSVSNNAWAKNFPGSSKMFLEPGKLVTVQELNKGIIIQSGNDACTAMAEHIAGSTD 145

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F  LM+  AK+IGM+++ + N  GL + +  +TA D A L   + ++ P  Y  +  + 
Sbjct: 146 SFVELMNAWAKRIGMESSHFVNVHGLDNDDHFSTAHDMATLAQAVIRDVPDEYAIYKEKS 205

Query: 217 FRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           F Y      N N LL  K  N+DG+KTG+T  +G+++V S    +  +++VVMG  ++  
Sbjct: 206 FTYNGITQYNRNGLLWDKSLNVDGMKTGHTDQAGYSLVASAYEGEMRLISVVMGTKSANA 265

Query: 276 RDQKALELITSFL 288
           R  ++ +L+    
Sbjct: 266 RKAESKKLLNYGF 278


>gi|153817207|ref|ZP_01969874.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae NCTC 8457]
 gi|227081121|ref|YP_002809672.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae M66-2]
 gi|229505452|ref|ZP_04394962.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae BX 330286]
 gi|298498936|ref|ZP_07008743.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MAK 757]
 gi|126512241|gb|EAZ74835.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae NCTC 8457]
 gi|227009009|gb|ACP05221.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae M66-2]
 gi|229357675|gb|EEO22592.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae BX 330286]
 gi|297543269|gb|EFH79319.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MAK 757]
          Length = 391

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 86/263 (32%), Positives = 140/263 (53%), Gaps = 8/263 (3%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
           +    F S I+   A ++ AK     +++D +  ++   K+ D    PASLTKMMT Y+I
Sbjct: 20  LSSTAFASPIVTPDAPQIAAK---GYVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVI 76

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            + ++   + LN  + +SK A  +N    SK++++  T          +I +S ND   A
Sbjct: 77  GQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVA 136

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E ++G+E  F  LM+  A  +GM+N+ + N+ GL D N  +T  D A+LG  L ++ P
Sbjct: 137 MAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVP 196

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           + Y  +S +KF Y      N N LL  K  N+DGIKTG+T  +G+N+V+S    +  +VA
Sbjct: 197 EEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVA 256

Query: 266 VVMGMPTSQERDQKALELITSFL 288
           VVMG      R  ++ +L++   
Sbjct: 257 VVMGTDNENARKAESKKLLSYGF 279


>gi|258623181|ref|ZP_05718190.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM573]
 gi|258625506|ref|ZP_05720398.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM603]
 gi|258582212|gb|EEW07069.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM603]
 gi|258584479|gb|EEW09219.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM573]
          Length = 413

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 87/346 (25%), Positives = 162/346 (46%), Gaps = 20/346 (5%)

Query: 6   IQSSAKKTFLTYPYGSIYIQRNIQLMGKILF------------LSIIMISMASELHAKPK 53
           ++ S  K F+ Y    ++I  ++    K LF            L    +++  E      
Sbjct: 2   VKRSCAKFFVGYTACLVFIGGHVMTSTKFLFRLSMACMAFVPTLGFSALTITPEPPQLAA 61

Query: 54  YSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
              ++ID +  ++   +       PASLTK+MT Y+  + ++   +H   Q+ +S  A  
Sbjct: 62  NGYVLIDYHTGKILVERNAHQKLNPASLTKLMTAYVAGQEMKRGNIHAEDQVRISNNAWA 121

Query: 113 Q---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +   + SK++++  +Y         LI +S ND S A  E ++GSE  F  LM++ A+++
Sbjct: 122 KKFPDSSKMFIEVGSYVNLMDLYRGLIVQSGNDASVAIAEHVAGSESAFVSLMNSWAQQL 181

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM N+ + N  GL D N  +T  D A+LG  + ++ P  Y  +S   F Y      N N 
Sbjct: 182 GMNNSSFANPHGLDDSNLYSTPYDIALLGQAIIRDLPDIYPLYSELSFTYNGITQHNRNG 241

Query: 230 LLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT--- 285
           LL  +  N+DG+KTGYT  +G+++ +S    +  +++VVMG  + + R+ ++ +L++   
Sbjct: 242 LLRDRSMNVDGMKTGYTSGAGYSLASSATSGEMRLISVVMGSKSVKIREAESKQLLSYGF 301

Query: 286 SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
            F E  +   +++  +        K  + +      Y    + D K
Sbjct: 302 RFFETVSPHQKESVIQSQRIWYGDKNEVALGSADTVYLTLPRNDVK 347


>gi|90425548|ref|YP_533918.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisB18]
 gi|90107562|gb|ABD89599.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisB18]
          Length = 476

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 92/294 (31%), Positives = 154/294 (52%), Gaps = 8/294 (2%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A    + ++I+ +  ++   +    P YPAS+TK+MT Y+  + ++  ++ L+T + VS 
Sbjct: 22  AAQAEALLLIEADTGKVLQAENATYPWYPASVTKLMTAYVTLKAIKEGRITLDTLLTVSP 81

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
           TAA+Q+PSK+  +  T  T +  +  ++ +SAND++    E + GS   F+ +M++ A++
Sbjct: 82  TAASQSPSKMGFRAGTQLTVDNALKMMLVKSANDMAVVLAEGVGGSIDGFSAMMNDNAQR 141

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           +GM  T Y N +GL    QIT+ARD  IL   + ++ P+Y  +  I   R+  R+  N N
Sbjct: 142 LGMTQTSYVNPNGLPADGQITSARDLGILARAIIRDLPEYEYFVHIPSIRFGKRVTQNFN 201

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +L+ +    DG KTG+   SGFN+V S       ++AVV+G P+SQ R  KA +L+    
Sbjct: 202 RLIGRYPGADGFKTGFICASGFNLVASATRDGKRLIAVVLGAPSSQARALKAAQLLERGF 261

Query: 289 EKKTLKH--QQTHRKDNLSSTS-----LKKSLMIKKLKRTYSQFKKIDAKAHST 335
               L          DNL+        L+  +   K KR  S   + D  A +T
Sbjct: 262 SANQLTWLRPALGTVDNLAPIDAAPPNLRDEMCGPKRKRPASDESEEDNIASAT 315


>gi|238897881|ref|YP_002923560.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465638|gb|ACQ67412.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 384

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 84/256 (32%), Positives = 142/256 (55%), Gaps = 11/256 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           +I +  E+ A    S I++D N  ++   K  DE R PASLTKMMT Y+I + ++S+K+ 
Sbjct: 17  LIPVPPEIKA---VSYILMDYNSGKILAEKNADEHRMPASLTKMMTSYVIGQAIKSEKIG 73

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           +N  + V K A +      +  S ++LK     +  Q    +  +S ND   A   +++G
Sbjct: 74  VNDIVTVGKDAVSTGNPEFKGSSLMFLKPGDQVSVAQLTRGITLQSGNDACVAMANYVAG 133

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+  A+++G++NT +KN  GL  + Q T+ARD A++G  L  + P  Y  + 
Sbjct: 134 SQDSFVHLMNAYAQEMGLKNTHFKNVHGLDSEGQYTSARDMALMGRALIHDVPDEYAIYK 193

Query: 214 IRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL  K  N+DGIKTG+T  +G+N+V S       +++VV+G  T
Sbjct: 194 EKEFTFNQIRQLNRNGLLWDKSLNVDGIKTGHTNAAGYNLVASATQGPMRLISVVLGGRT 253

Query: 273 SQERDQKALELITSFL 288
            +ER+ ++ +L++   
Sbjct: 254 FKEREAESKKLLSWGF 269


>gi|121591022|ref|ZP_01678339.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 2740-80]
 gi|121547132|gb|EAX57264.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 2740-80]
          Length = 386

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 86/263 (32%), Positives = 140/263 (53%), Gaps = 8/263 (3%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
           +    F S I+   A ++ AK     +++D +  ++   K+ D    PASLTKMMT Y+I
Sbjct: 20  LSSTAFASPIVTPDAPQIAAK---GYVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVI 76

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            + ++   + LN  + +SK A  +N    SK++++  T          +I +S ND   A
Sbjct: 77  GQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVA 136

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E ++G+E  F  LM+  A  +GM+N+ + N+ GL D N  +T  D A+LG  L ++ P
Sbjct: 137 MAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVP 196

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           + Y  +S +KF Y      N N LL  K  N+DGIKTG+T  +G+N+V+S    +  +VA
Sbjct: 197 EEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVA 256

Query: 266 VVMGMPTSQERDQKALELITSFL 288
           VVMG      R  ++ +L++   
Sbjct: 257 VVMGTDNENARKAESKKLLSYGF 279


>gi|92112285|ref|YP_572213.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chromohalobacter
           salexigens DSM 3043]
 gi|91795375|gb|ABE57514.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chromohalobacter
           salexigens DSM 3043]
          Length = 413

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 121/321 (37%), Positives = 178/321 (55%), Gaps = 7/321 (2%)

Query: 21  SIYIQRNIQLMGKIL---FLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           S++ QR   L   IL   F   +     +E    P+Y+SIVID     +      D PRY
Sbjct: 3   SLHSQRARLLPALILLVVFAIALCTLSVAEAAPNPRYASIVIDTENGAVLHADNADAPRY 62

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTKMMTLY++FE ++   L L +++PVS+ AA + PSK+ +        E  I  LI
Sbjct: 63  PASLTKMMTLYLLFEAIEDDTLSLESRLPVSQYAAAKPPSKMGVTPGETVKVEDAINILI 122

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +SANDV+    E ++GSE  FA  M++KA+ +GM +T ++NASGL D  Q+TTARD AI
Sbjct: 123 VKSANDVAAVVAEGLAGSESVFAGQMTDKARALGMMDTTFRNASGLPDAGQVTTARDMAI 182

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L + L ++FP YY YF   +F ++ +    HN+LL+     DG+KTGY R SGFN+ TS 
Sbjct: 183 LALRLMQDFPGYYPYFGKTQFTWQGKRYQGHNRLLDSYAGADGLKTGYIRASGFNVATSA 242

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEK-KTLKHQQTHRKDNLSSTSLKKSLMI 315
            +    I++VVMG  T+Q RD    EL+ S   +  +L       + ++    L+     
Sbjct: 243 VHDGRRILSVVMGGFTAQSRDAHMRELLDSGFARVASLAQGDWVAQADIYGERLQSPASP 302

Query: 316 KKLKRTYSQFKKIDAKAHSTQ 336
              +      +++ A+A S Q
Sbjct: 303 APTRD--DPIRELIAQAQSEQ 321


>gi|168238798|ref|ZP_02663856.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194734763|ref|YP_002115095.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194710265|gb|ACF89486.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197288431|gb|EDY27812.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 390

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 75/278 (26%), Positives = 140/278 (50%), Gaps = 8/278 (2%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPAS 79
            ++I  ++  M     L+   +S A +  A    + +++D    Q+     + + R PAS
Sbjct: 6   RLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +      
Sbjct: 66  LTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSR 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI  S ND   A  ++I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D
Sbjct: 126 GLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYD 185

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNI 252
            A+L   +    P++Y  +S +   +      N N LL  K  +IDG+KTG+T  +GFN+
Sbjct: 186 LAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNL 245

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           + S       ++AVVMG  +S+ R+++A +L+   L+ 
Sbjct: 246 IASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGLQN 283


>gi|161613330|ref|YP_001587295.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161362694|gb|ABX66462.1| hypothetical protein SPAB_01041 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 388

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 75/278 (26%), Positives = 140/278 (50%), Gaps = 8/278 (2%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPAS 79
            ++I  ++  M     L+   +S A +  A    + +++D    Q+     + + R PAS
Sbjct: 4   RLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPAS 63

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +      
Sbjct: 64  LTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSR 123

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI  S ND   A  ++I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D
Sbjct: 124 GLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYD 183

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNI 252
            A+L   +    P++Y  +S +   +      N N LL  K  +IDG+KTG+T  +GFN+
Sbjct: 184 LAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNL 243

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           + S       ++AVVMG  +S+ R+++A +L+   L+ 
Sbjct: 244 IASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGLQN 281


>gi|317128503|ref|YP_004094785.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cellulosilyticus
           DSM 2522]
 gi|315473451|gb|ADU30054.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cellulosilyticus
           DSM 2522]
          Length = 387

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 86/293 (29%), Positives = 154/293 (52%), Gaps = 16/293 (5%)

Query: 34  ILFLSIIMISMASELHAK--------PKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMM 84
           +L L + M S A    A+           S+I+I+ +  Q+   K   E   PAS+TK+M
Sbjct: 7   VLLLGLYMFSSAGSALAEESTVDLADDATSAILIERDTGQVLYEKNSGEKLPPASMTKVM 66

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T+ +I E + S K+  + ++  S+ AA+   S+++L+     T E+ +  +   S ND S
Sbjct: 67  TMLLIMEAIDSGKITWDEKVRTSERAASMGGSQIFLEPGEEMTVEEMMKGIAIASGNDAS 126

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  E ++GSE++F  +M++KAKK+G++NT + N++GL  +N  ++A D A++   L K 
Sbjct: 127 VAMAEHLAGSEEQFVQMMNDKAKKLGLKNTHFVNSNGLPAENHYSSAEDLALMAKALLK- 185

Query: 205 FPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           + +  KY S     +R+       + N NKL+     +DG+KTG+T  + + +  S    
Sbjct: 186 YEEITKYTSLYEDYLRQDTDDEFWLVNTNKLVKFYPGVDGLKTGFTNEAKYCLTASANKN 245

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
              I+AVVMG PT ++R+++  E++     +  L+ +   R   L    + K 
Sbjct: 246 GMRIIAVVMGAPTPKDRNRQVTEMLDYAYSQYELQRR-YDRGQVLGEAEVSKG 297


>gi|183598299|ref|ZP_02959792.1| hypothetical protein PROSTU_01686 [Providencia stuartii ATCC 25827]
 gi|188020471|gb|EDU58511.1| hypothetical protein PROSTU_01686 [Providencia stuartii ATCC 25827]
          Length = 401

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 154/317 (48%), Gaps = 22/317 (6%)

Query: 32  GKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGF-KQDEPRYPASLTKMMTLY 87
           G  L +++   + A+     P+  +   +++D +  ++      DE   PASLTKMMT Y
Sbjct: 16  GLGLLVAVSHFAYAAGTPVAPQVDAKAFVLMDYDSGKILASGNPDERLDPASLTKMMTSY 75

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSAN 141
           ++ + +++ K+     + V   A        +  S ++LK K   +       ++ +S N
Sbjct: 76  VVGQAIKAGKITPQDMVTVGVDAWATGNPVLKGSSLMFLKPKDRVSVLDLNKGVVIQSGN 135

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D S A  ++++GS+  F  LM+   K++G++NT +K   GL  + Q +TARD AIL   +
Sbjct: 136 DASIALADYVAGSQDSFVSLMNEYVKQLGLKNTHFKTVHGLDSEGQYSTARDMAILAQAM 195

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKD 260
            ++ P  Y     ++F +      N N+LL   + N+DG+KTG+T  +G N+V S     
Sbjct: 196 IRDVPDEYALHKEKEFTFNKIRQPNRNRLLWSQNLNVDGVKTGHTSGAGHNLVASATDGP 255

Query: 261 DPIVAVVMGMPTSQERDQKALELITS---FLEKKT-LKHQQTHRKDNL-------SSTSL 309
             +++VV+G P+ + R  ++ +L+T    F E  T +K  QT +   +        +  +
Sbjct: 256 MRLISVVLGAPSDRVRFSESEKLLTWGFRFFETVTPIKADQTLQTQRVWFGDKSEVALGV 315

Query: 310 KKSLMIKKLKRTYSQFK 326
           +K   I   K      K
Sbjct: 316 EKDTAITIPKGQLQNLK 332


>gi|83945500|ref|ZP_00957847.1| D-alanyl-D-alanine carboxypeptidase [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851076|gb|EAP88934.1| D-alanyl-D-alanine carboxypeptidase [Oceanicaulis alexandrii
           HTCC2633]
          Length = 418

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 105/255 (41%), Positives = 150/255 (58%), Gaps = 1/255 (0%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYL 93
           L   + + ++ S   A  +Y++ V D+   ++   +  D  RYPASLTKMMTLY++FE L
Sbjct: 8   LLCVLSVFALTSRAEASERYAAFVADMETGEVLHSRRADAERYPASLTKMMTLYMLFEAL 67

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           +  ++ L+  I  S  AA++  SKL L+       E  I ALI +SANDV+ A  E +  
Sbjct: 68  ERGEVSLDDAITASAEAASRPSSKLGLRAGQTIRVEDAIRALIIQSANDVAVAVAEHLQD 127

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
            E +FA +M+ +A+++GM NT+++NASGL D  Q TTARD A L   L ++FPQYY YF 
Sbjct: 128 DEARFAAVMTLRARELGMTNTVFRNASGLPDAAQHTTARDVARLAYALHEDFPQYYHYFG 187

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
             +FR+      NHN L+     +DG+KTGY R SGFN+  S       I+AVVMG  ++
Sbjct: 188 ETRFRWNGVTHRNHNSLVGNQAGVDGLKTGYIRASGFNLAASAERDGHRIIAVVMGGVSA 247

Query: 274 QERDQKALELITSFL 288
             RD  A ELI +  
Sbjct: 248 SVRDAHARELIEAAF 262


>gi|313901874|ref|ZP_07835294.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467867|gb|EFR63361.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 437

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 84/246 (34%), Positives = 126/246 (51%), Gaps = 9/246 (3%)

Query: 52  PKYSS--IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           P  S+  +V+D    Q+   K  DEPR+PAS++K+MTL +  E + + ++ L  Q+ VS 
Sbjct: 81  PARSAALLVMDPASGQILWEKNGDEPRHPASISKLMTLLLTLEAIDAGQIRLQDQVTVSP 140

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            A     S  +L+     T E  I A+   SAND   A  E+ISG   +F   M+ +A +
Sbjct: 141 RAQGTPGSTAFLEAGERITVEDLIKAVAVASANDACVALAEYISGDVDRFVQRMNQRAAE 200

Query: 169 IGMQNTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSI-----RKFRYRNR 222
           +G+  T + +  GL D      +ARD A+L   L  + P+   Y SI     RK   R  
Sbjct: 201 LGLTRTRFVDPHGLTDQPGNRMSARDVALLSRYLINHHPEILHYTSIWEDWLRKGTDREF 260

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            +TN NKL+     +DG+KTG T  SG ++V + R  DD  + VV+G P S  R ++A  
Sbjct: 261 WLTNTNKLVAWYEGVDGLKTGLTDESGPSVVVTARKGDDRFIVVVLGAPDSNTRWREASR 320

Query: 283 LITSFL 288
           L+    
Sbjct: 321 LLDWAF 326


>gi|317047293|ref|YP_004114941.1| beta-lactamase [Pantoea sp. At-9b]
 gi|316948910|gb|ADU68385.1| Beta-lactamase [Pantoea sp. At-9b]
          Length = 428

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 82/286 (28%), Positives = 149/286 (52%), Gaps = 19/286 (6%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFK 70
            S +++R    +G ++ LS+   ++A +++ K            + ++ID N  ++   K
Sbjct: 31  PSRFLKRLT--VGSLVALSLSHAAIADDVNLKTMIPGVPDIDAEAYVLIDYNSGKVLAEK 88

Query: 71  Q-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEK 123
             D  R PASLTKMMT Y+I + +++ K+H +  + V K A        +  S ++LK  
Sbjct: 89  NADARRDPASLTKMMTSYVIGQAVKAGKIHQDDIVTVGKDAWATGNPVFKGSSLMFLKPG 148

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
                 Q    ++ +S ND   A  ++++GS+  F  LM+N  + +G++NT ++   GL 
Sbjct: 149 DRVPVSQLTRGIVLQSGNDACVAMADYVAGSQDAFVNLMNNYVQALGLKNTHFQTVHGLD 208

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKT 242
              Q ++ARD A++G  L ++ P  Y  +  ++F + N    N N LL     N+DGIKT
Sbjct: 209 ADGQYSSARDMALIGQALIRDVPDEYAVYHEKEFTFNNIRQLNRNGLLWDTSLNVDGIKT 268

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           G+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T   
Sbjct: 269 GHTDAAGYNLVASATEGQMRLISAVMGGHTYKGRETESKKLLTWGF 314


>gi|170769785|ref|ZP_02904238.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii
           TW07627]
 gi|170121399|gb|EDS90330.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii
           TW07627]
          Length = 390

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 73/285 (25%), Positives = 141/285 (49%), Gaps = 14/285 (4%)

Query: 22  IYIQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEP 74
           + ++R + +   +   ++        I  + +  A    S +++D    Q+     + + 
Sbjct: 1   MLLKRRLFIAASLFVFNLSSSQAAENIPFSPQPPAIHAGSWVLMDYTTGQILTAGNEHQQ 60

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTT 128
           R PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    + 
Sbjct: 61  RNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
                 LI  S ND   A  ++I+G +++F  +M+N A+K+ +Q+T ++   GL    Q 
Sbjct: 121 RDLSRGLIVDSGNDACVALADYIAGGQRQFVDMMNNYAEKLHLQDTHFETVHGLDAPGQH 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRN 247
           ++A D A+L   +    P +Y  +S +   +      N N LL  K  N+DG+KTG+T  
Sbjct: 181 SSAYDLAVLSRAIIHGEPDFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSG 240

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +GFN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 AGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 285


>gi|269961547|ref|ZP_06175909.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi 1DA3]
 gi|269833588|gb|EEZ87685.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi 1DA3]
          Length = 392

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 86/258 (33%), Positives = 138/258 (53%), Gaps = 8/258 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           F S +++  A ++ AK     +++D N  ++   K+ +    PASLTKMMT Y+I + L 
Sbjct: 26  FASPVVVPDAPQIAAK---GYVLMDYNSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELA 82

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              +  +  + +SK A  +N    SK++++  T          +I +S ND   A  E I
Sbjct: 83  RGNISEDDDVTISKNAWAKNFPDSSKMFIEVGTTVKVHDLNRGIIIQSGNDACVAMAEHI 142

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  F  LM+  A  +GM+NT + N  GL + N  +T  D A+LG  L ++ P  Y+ 
Sbjct: 143 AGSEDAFVDLMNAWANTLGMKNTHFANVHGLDNPNLYSTPYDMALLGKALIRDVPDEYRI 202

Query: 212 FSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL  K  N+DGIKTG+T N+G+++V+S       +VAVVMG 
Sbjct: 203 YSDKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGQMRLVAVVMGT 262

Query: 271 PTSQERDQKALELITSFL 288
             +  R  ++ +L++   
Sbjct: 263 KDANARKSESKKLLSYGF 280


>gi|253990345|ref|YP_003041701.1| penicillin-binding protein 6 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781795|emb|CAQ84958.1| penicillin-binding protein 6 (d-alanyl-d-alanine carboxypeptidas
           fraction c) (dd-pept (dd-carboxypeptidase) (pbp-6)idase)
           [Photorhabdus asymbiotica]
          Length = 400

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 78/332 (23%), Positives = 153/332 (46%), Gaps = 28/332 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMA---------SELHAKPKYSSIVIDVNKNQMTGFKQ-DE 73
           +++N+ +  K +   + +I +A           + +    + +++D +  ++      DE
Sbjct: 1   MKKNLAMTVKCVTAVLAVILVANTHAYASDEPLVPSVDAKAYVLMDYDSGKILASNNPDE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFT 127
              PASLTK+MT Y+I + +++ K+     + V K A        +  S ++LK      
Sbjct: 61  RLDPASLTKIMTSYVIGQAIKAGKITPEDVVTVGKDAWATGNPVLKGSSLMFLKPGDQVK 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
                  ++ +S ND S A  ++++GS+  F  LM+N  K +G+ NT ++   GL  + Q
Sbjct: 121 VIDLNRGIVIQSGNDASIALADYVAGSQDTFVSLMNNYVKSLGLTNTHFQTVHGLDAEGQ 180

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTR 246
            +TARD A+L   + ++ P  Y     + F +      N N+LL  K  N+DG+KTGYT 
Sbjct: 181 FSTARDMAVLSQAMIRDVPDEYVLHKEKAFTFNKIQQPNRNRLLWNKSINVDGVKTGYTS 240

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK----------KTLKHQ 296
            +G+N+V S       +++VV+G P+ + R  ++ +L++               ++   +
Sbjct: 241 GAGYNLVASATEGPMRLISVVLGAPSDRVRFAESEKLLSWGFRFYETVTPIKASESFVSE 300

Query: 297 QTHRKD-NLSSTSLKKSLMIKKLKRTYSQFKK 327
           +    D +     ++K   I   +      K 
Sbjct: 301 KVWYGDRSDVVLGVEKDAAITIPRGQLKNLKA 332


>gi|85713001|ref|ZP_01044039.1| D-alanyl-D-alanine carboxypeptidase [Idiomarina baltica OS145]
 gi|85693170|gb|EAQ31130.1| D-alanyl-D-alanine carboxypeptidase [Idiomarina baltica OS145]
          Length = 388

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 84/273 (30%), Positives = 140/273 (51%), Gaps = 5/273 (1%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTK 82
           I+  + L+    F      S+          + I+ID    ++      DE   PASLTK
Sbjct: 8   IKPLVTLVAVFSFGVASAQSLVPNPPQVNAKAYILIDHKTGKVLAEGNADESLPPASLTK 67

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRS 139
           MMT YII + +Q+ ++  +  + +S+ A  +N    SK++++  T  +       +I  S
Sbjct: 68  MMTSYIIGKEIQAGRISNSDMVTISENAWAKNFPESSKMFIEVGTEVSVSDLNHGIIISS 127

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND   A  E+I+GSE  FA LM+  A+++GM ++ + N+ GL D  Q  +ARD + L  
Sbjct: 128 GNDACVAMAEYIAGSEGAFADLMNTYAQEVGMTSSHFANSHGLPDPEQYVSARDMSKLAS 187

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY 258
            L    P+ YK +S + + Y N    N N LL  +  N+DGIKTG+T  +G+++VTS   
Sbjct: 188 ALINETPEEYKIYSQKSYTYNNIKQYNRNALLWDRSMNVDGIKTGHTSEAGYSLVTSAVD 247

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
            D  +++VV+G  + Q R  ++ +L+       
Sbjct: 248 GDTRLISVVIGTGSEQARKIESKKLLNYGFRYY 280


>gi|285017609|ref|YP_003375320.1| D-alanyl-D-alanine carboxypeptidase [Xanthomonas albilineans GPE
           PC73]
 gi|283472827|emb|CBA15332.1| probable d-alanyl-d-alanine carboxypeptidase protein [Xanthomonas
           albilineans]
          Length = 402

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 77/251 (30%), Positives = 130/251 (51%), Gaps = 6/251 (2%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +          S +++D    Q+   + +  R  PAS+TK+MT Y++   L+  K+  + 
Sbjct: 41  IPPAPKPAVSKSWVLMDYASGQVLAGENEHLRVAPASITKVMTSYVVAAELKQGKIKRDD 100

Query: 103 QIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           Q+ +S+ A  +       S            E     +  +S ND + A  E  +GSE+ 
Sbjct: 101 QVMLSERAWREGGAGTDGSYSGFPVNQTARLEDMEKGMAVQSGNDAAIALAEHTAGSEEA 160

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           FA LM+N A KIGM  + + NA GL  +   TTA D A+LG  + +++P+ Y Y  IR+F
Sbjct: 161 FANLMNNYAAKIGMTGSHFVNAHGLSAEGHYTTAYDLALLGRAMVRDYPETYAYNKIREF 220

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           R  +    N N LL +  ++DGIKTG+T  +G+ +++S +  D  ++AVVMG  + ++R 
Sbjct: 221 RVGDITQPNRNLLLWRDPSVDGIKTGHTSEAGYCLLSSAQRGDQRLIAVVMGDSSEKQRA 280

Query: 278 QKALELITSFL 288
           + +L L+    
Sbjct: 281 EDSLALLNWGF 291


>gi|22126741|ref|NP_670164.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6
           [Yersinia pestis KIM 10]
 gi|45441099|ref|NP_992638.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|149366701|ref|ZP_01888735.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis CA88-4125]
 gi|218928470|ref|YP_002346345.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis CO92]
 gi|21959762|gb|AAM86415.1|AE013888_11 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6
           [Yersinia pestis KIM 10]
 gi|45435958|gb|AAS61515.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|115347081|emb|CAL19973.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis CO92]
 gi|149291075|gb|EDM41150.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis CA88-4125]
          Length = 432

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 76/254 (29%), Positives = 134/254 (52%), Gaps = 11/254 (4%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLN 101
             A ++ AK   + +++D N  ++      + R  PASLTK+M+ Y+I + +++ K+  +
Sbjct: 64  PAAPQIDAK---AYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPD 120

Query: 102 TQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
             + V K A        +  S ++LK             ++ +S ND S A  ++++GS+
Sbjct: 121 DLVTVGKDAWATGNPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQ 180

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             F  LM+N AK +G+ NT +    GL    Q +TARD A+LG  L ++ P+ Y     +
Sbjct: 181 DSFVGLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEK 240

Query: 216 KFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           +F +     TN N+LL     N+DG+KTGYT  +G+N+V S       +++VV+G P+ +
Sbjct: 241 EFTFNKIRQTNRNRLLWNSSLNVDGMKTGYTNGAGYNLVASATDGPMRLISVVLGAPSDK 300

Query: 275 ERDQKALELITSFL 288
            R  ++ +L+T   
Sbjct: 301 VRFSESEKLLTWGF 314


>gi|156973523|ref|YP_001444430.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi ATCC BAA-1116]
 gi|156525117|gb|ABU70203.1| hypothetical protein VIBHAR_01214 [Vibrio harveyi ATCC BAA-1116]
          Length = 392

 Score =  296 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 86/258 (33%), Positives = 138/258 (53%), Gaps = 8/258 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           F S +++  A ++ AK     +++D N  ++   K+ +    PASLTKMMT Y+I + L 
Sbjct: 26  FASPVVVPDAPQIAAK---GYVLMDYNSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELA 82

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              +  +  + +SK A  +N    SK++++  T          +I +S ND   A  E I
Sbjct: 83  RGNISEDDDVTISKNAWAKNFPDSSKMFIEVGTTVKVHDLNRGIIIQSGNDACVAMAEHI 142

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  F  LM+  A  +GM+NT + N  GL + N  +T  D A+LG  L ++ P  Y+ 
Sbjct: 143 AGSEDAFVDLMNAWANTLGMKNTHFANVHGLDNPNLYSTPYDMALLGKALIRDVPDEYRI 202

Query: 212 FSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL  K  N+DGIKTG+T N+G+++V+S       +VAVVMG 
Sbjct: 203 YSDKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGQMRLVAVVMGT 262

Query: 271 PTSQERDQKALELITSFL 288
             +  R  ++ +L++   
Sbjct: 263 KDANARKSESKKLLSYGF 280


>gi|152976485|ref|YP_001376002.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025237|gb|ABS23007.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH
           391-98]
          Length = 392

 Score =  296 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 161/305 (52%), Gaps = 18/305 (5%)

Query: 24  IQRNIQ-LMGKILFLSIIMISMASELHA----KPK-----YSSIVIDVNKNQMTGFKQ-D 72
           ++R    L+  +L LS   +S A    A    KPK      S+IVI+ +  ++   K  +
Sbjct: 1   MKRVFGILVCCMLLLSHTSVSFAKSEKAIEETKPKLAEQASSAIVIEQDTGKVLFEKNPN 60

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           E   PAS+TK+MT+ +I E ++  KL L  ++  S+ AA+   S+++L+     T  + +
Sbjct: 61  EKLPPASMTKIMTMLLIMEQVEKGKLKLEDKVRTSEHAASMGGSQIFLEPGEEMTVNEML 120

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             +   S ND S A  E I+GSE+ F  +M+ +AK++G++NT ++N +GL  KN  +TA 
Sbjct: 121 KGIAIASGNDASVAVAEHIAGSEEGFVNMMNKRAKELGLKNTHFQNPTGLPAKNHYSTAI 180

Query: 193 DQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRN 247
           D AI+   L K +P   KY       +R+   +   + N NKL+     +DG+KTG+T  
Sbjct: 181 DMAIIAKELMK-YPLIRKYTGKYEDYLRENTDKKFWLVNTNKLVRFYPGVDGVKTGFTTE 239

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSST 307
           + + +  S       +++VVMG PTS+ER+ +  +L+     + T K +   R + + + 
Sbjct: 240 AKYCLTASAEKNGMRVISVVMGAPTSKERNSQVTKLLDYAFGQYTTK-KLYKRGEKIQTV 298

Query: 308 SLKKS 312
            + K 
Sbjct: 299 QVGKG 303


>gi|331673546|ref|ZP_08374309.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli TA280]
 gi|331068819|gb|EGI40211.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli TA280]
          Length = 390

 Score =  296 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 71/285 (24%), Positives = 141/285 (49%), Gaps = 14/285 (4%)

Query: 22  IYIQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEP 74
           + ++R + +   +   ++        I  + +       S +++D    Q+     + + 
Sbjct: 1   MLLKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQ 60

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTT 128
           R PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    + 
Sbjct: 61  RNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
                 LI  S ND   A  ++I+G +++F  +M+N A K+ +++T ++   GL    Q 
Sbjct: 121 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAGKLHLKDTHFETVHGLDAPGQH 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRN 247
           ++A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  
Sbjct: 181 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSG 240

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +GFN++ S       ++AVVMG  +++ R+++A +L++   +  T
Sbjct: 241 AGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLSWGQQNFT 285


>gi|193071481|ref|ZP_03052393.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019]
 gi|192955203|gb|EDV85694.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019]
          Length = 388

 Score =  296 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFIFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQYSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283


>gi|127513867|ref|YP_001095064.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella loihica PV-4]
 gi|126639162|gb|ABO24805.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella loihica PV-4]
          Length = 390

 Score =  296 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 86/270 (31%), Positives = 147/270 (54%), Gaps = 12/270 (4%)

Query: 31  MGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFKQD-EPRYPASLTK 82
              +L +S + I+ A+         PK ++   I++D N  Q+   +   E   PASLTK
Sbjct: 8   FKTLLLVSSLSITAANAAPVVTPDAPKVAAKAFILMDYNSGQIIAEENAYESLNPASLTK 67

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRS 139
           MMT Y+I   ++   +    ++ +SK A ++N    SK++++     + E+    +I +S
Sbjct: 68  MMTSYVIGHEIKVGNISPQDKVTISKNAWSKNFPDSSKMFIEVGKQVSVEELNRGIIIQS 127

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND   A  E I+G+E  F  LM++ AK++GM+++ ++N+ GL  +N  TTA D A+LG 
Sbjct: 128 GNDACVAMAEHIAGTEDGFVDLMNSWAKQLGMRDSYFENSHGLDSENHKTTAYDMALLGA 187

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY 258
            L ++ P+ Y+ +S + F Y      N N LL  K  N+DGIKTG+T  +G+N+VTS   
Sbjct: 188 ALIRDVPEEYRVYSEKSFTYNGIKQYNRNGLLWDKSLNVDGIKTGHTSGAGYNLVTSATK 247

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFL 288
               +V+VV+G  +   R  ++ +L+    
Sbjct: 248 DGMRLVSVVLGTASESARKAESKKLLNYGF 277


>gi|261825019|pdb|3IT9|A Chain A, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
           From E. Coli In Apo State
 gi|261825020|pdb|3IT9|B Chain B, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
           From E. Coli In Apo State
 gi|261825021|pdb|3IT9|C Chain C, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
           From E. Coli In Apo State
 gi|261825022|pdb|3IT9|D Chain D, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
           From E. Coli In Apo State
 gi|261825023|pdb|3ITA|A Chain A, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
           From E. Coli In Acyl-Enzyme Complex With Ampicillin
 gi|261825024|pdb|3ITA|B Chain B, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
           From E. Coli In Acyl-Enzyme Complex With Ampicillin
 gi|261825025|pdb|3ITA|C Chain C, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
           From E. Coli In Acyl-Enzyme Complex With Ampicillin
 gi|261825026|pdb|3ITA|D Chain D, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
           From E. Coli In Acyl-Enzyme Complex With Ampicillin
 gi|261825027|pdb|3ITB|A Chain A, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
           From E. Coli In Complex With A Substrate Fragment
 gi|261825028|pdb|3ITB|B Chain B, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
           From E. Coli In Complex With A Substrate Fragment
 gi|261825029|pdb|3ITB|C Chain C, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
           From E. Coli In Complex With A Substrate Fragment
 gi|261825030|pdb|3ITB|D Chain D, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
           From E. Coli In Complex With A Substrate Fragment
          Length = 352

 Score =  296 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 77/256 (30%), Positives = 131/256 (51%), Gaps = 8/256 (3%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           M     E  +    + I++D    ++      DE   PASLTK+MT Y++ + L++ K+ 
Sbjct: 1   MAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIK 60

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           L   + V K A        +  S ++LK     +       +I +S ND   A  ++++G
Sbjct: 61  LTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAG 120

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S++ F  LM+  AKK+G+ NT ++   GL    Q +TARD A+LG  L  + P+ Y    
Sbjct: 121 SQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHK 180

Query: 214 IRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N+LL   + N+DG+KTG T  +G+N+V S    D  +++VV+G  T
Sbjct: 181 EKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKT 240

Query: 273 SQERDQKALELITSFL 288
            + R  ++ +L+T   
Sbjct: 241 DRIRFNESEKLLTWGF 256


>gi|37525520|ref|NP_928864.1| penicillin-binding protein 6 precursor (D-alanyl-D-alanine
           carboxypeptidase fraction C) (DD-pept
           (DD-carboxypeptidase) (PBP-6)idase) [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36784948|emb|CAE13866.1| penicillin-binding protein 6 precursor (D-alanyl-D-alanine
           carboxypeptidase fraction C) (DD-pept
           (DD-carboxypeptidase) (PBP-6)idase) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 400

 Score =  296 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 81/332 (24%), Positives = 154/332 (46%), Gaps = 28/332 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASE---------LHAKPKYSSIVIDVNKNQMTGF-KQDE 73
           +++N+ +  K +   + + SM S          +      + +++D +  ++      DE
Sbjct: 1   MKKNLAMAIKCVVAVLTVASMVSARVYASDEPVVPPVDARAYVLMDYDSGKILAAGNPDE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFT 127
              PASLTK+MT Y++ + +++ K+     + V K A        +  S ++LK      
Sbjct: 61  RLDPASLTKIMTSYVVGQAIKAGKITPEDIVTVGKDAWATGNPILKGSSLMFLKPGDRVK 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
                  ++ +S ND S A  ++++GS+  F  LM+N AK +G+ NT ++   GL  + Q
Sbjct: 121 VIDLNHGVVVQSGNDASIALADYVAGSQDVFVSLMNNYAKALGLTNTHFRTVHGLDAEGQ 180

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTR 246
            +TARD A+L   + ++ P  Y     + F +      N N+LL  K  N+DG+KTGYT 
Sbjct: 181 FSTARDMAVLSQAMIRDVPDEYALHKEKTFTFNKIQQPNRNRLLWNKNMNVDGVKTGYTS 240

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS---FLEKKT--------LKH 295
            +G+N+V S       +++VV+G P+ + R  ++ +L+     F E  T        +  
Sbjct: 241 GAGYNLVASATEGPMRLISVVLGAPSDRIRFVESEKLLAWGLRFYETVTPIKASEPFVSQ 300

Query: 296 QQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
           +  +   +  +  ++K   I   +      K 
Sbjct: 301 KVWYGGRSDVALGVEKDAAITIPRGQLKNLKA 332


>gi|15640963|ref|NP_230594.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|9655406|gb|AAF94109.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O1 biovar El
           Tor str. N16961]
          Length = 391

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 86/263 (32%), Positives = 139/263 (52%), Gaps = 8/263 (3%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
           +    F S I+   A ++ AK     +++D +  ++   K+ D    PASLTKMMT Y+I
Sbjct: 20  LSSTAFASPIVTPDAPQIAAK---GYVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVI 76

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            + ++   + LN  + +SK A  +N    SK++++  T          +I +S ND   A
Sbjct: 77  GQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVA 136

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E ++G+E  F  LM+  A  +GM+N+ + N+ GL D N  +T  D A+LG  L +  P
Sbjct: 137 MAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQALIRXVP 196

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           + Y  +S +KF Y      N N LL  K  N+DGIKTG+T  +G+N+V+S    +  +VA
Sbjct: 197 EEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVA 256

Query: 266 VVMGMPTSQERDQKALELITSFL 288
           VVMG      R  ++ +L++   
Sbjct: 257 VVMGTDNENARKAESKKLLSYGF 279


>gi|188492414|ref|ZP_02999684.1| penicillin binding protein 6B [Escherichia coli 53638]
 gi|188487613|gb|EDU62716.1| penicillin binding protein 6B [Escherichia coli 53638]
          Length = 388

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFIFNLSSGFAAENIPFSPQPPQIHAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283


>gi|293446369|ref|ZP_06662791.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli B088]
 gi|291323199|gb|EFE62627.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli B088]
 gi|324119040|gb|EGC12929.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1167]
          Length = 390

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 71/285 (24%), Positives = 141/285 (49%), Gaps = 14/285 (4%)

Query: 22  IYIQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEP 74
           + ++R + +   +   ++        I  + +       S +++D    Q+     + + 
Sbjct: 1   MLLKRRLIIAASLFVFNLSSGFAAENIPFSPQPPQIHAGSWVLMDYTTGQILTAGNEHQQ 60

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTT 128
           R PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    + 
Sbjct: 61  RNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
                 LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q 
Sbjct: 121 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRN 247
           ++A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  
Sbjct: 181 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSG 240

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +GFN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 AGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 285


>gi|304410306|ref|ZP_07391925.1| Beta-lactamase [Shewanella baltica OS183]
 gi|307301983|ref|ZP_07581741.1| Beta-lactamase [Shewanella baltica BA175]
 gi|304351715|gb|EFM16114.1| Beta-lactamase [Shewanella baltica OS183]
 gi|306914021|gb|EFN44442.1| Beta-lactamase [Shewanella baltica BA175]
 gi|315268757|gb|ADT95610.1| Beta-lactamase [Shewanella baltica OS678]
          Length = 425

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 78/275 (28%), Positives = 145/275 (52%), Gaps = 9/275 (3%)

Query: 23  YIQRNIQLMGKILFLSIIMISM----ASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYP 77
           +++  I+ +  I   S+ + +       +  +    + +++D N  Q+       E   P
Sbjct: 38  FVKSPIKTLLLISSASLPVYAAQPIITPDAPSVAAKAFVLMDYNSGQIIAESNAYESLNP 97

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           ASLTKMMT Y+I + +++  + ++  + +SK A ++N    SK++++  T          
Sbjct: 98  ASLTKMMTSYVIGQEIKAGNVSVDDDVTISKNAWSKNFSDSSKMFIEVGTTVKVGDLNRG 157

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +I +S ND   A  E I+G+E  F  +M++ AK++GM+++ ++NA GL  +N  +TA D 
Sbjct: 158 IIIQSGNDACVAMAEHIAGTEGAFVDMMNSWAKQLGMRDSYFENAHGLDAENHKSTAYDM 217

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIV 253
           A+LG  L ++ P  Y  +S + + +      N N LL     N+DGIKTG+T  +G+N+V
Sbjct: 218 ALLGAALIRDVPDEYHIYSEKFYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGYNLV 277

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            S       +++VVMG  +   R  ++ +L+T   
Sbjct: 278 ASATKDGMRLISVVMGTQSESARKAESKKLLTYGF 312


>gi|86139111|ref|ZP_01057682.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp.
           MED193]
 gi|85824342|gb|EAQ44546.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp.
           MED193]
          Length = 554

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 102/266 (38%), Positives = 153/266 (57%), Gaps = 4/266 (1%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           + +MG +LFL + +I   ++  A P Y+++V+D    ++   +  D   +PASLTKMMTL
Sbjct: 24  LWIMGVVLFLGMALIP-PTQAQAAP-YAAVVVDARTGEVLHSRNADARLHPASLTKMMTL 81

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           YI FE +++ ++ L+ ++ +SK AA + PSKL LK          I A   +SAND +TA
Sbjct: 82  YIAFEAVRNGEISLDQKVRISKNAAAEPPSKLGLKSGQRIAFRYLIRASAVKSANDAATA 141

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
            GE ISGSE  FA  M+  AK +GM  T +KNA GL +   ++TARD   LG  +  ++P
Sbjct: 142 IGEAISGSEAAFARRMTRTAKALGMSRTTFKNAHGLTEAGHLSTARDMTKLGRHILYDYP 201

Query: 207 QYYKYFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           +YY  FS        + + N N +LL      DGIKTGYTR +G N+V S +  D+ I+A
Sbjct: 202 EYYHLFSRTSIDAGVKTVPNTNRRLLASYKGADGIKTGYTRAAGSNLVASAKRGDERIIA 261

Query: 266 VVMGMPTSQERDQKALELITSFLEKK 291
            V G  +S  R+ + +EL+     + 
Sbjct: 262 TVFGGKSSTSRNARIVELLDLGFRRA 287


>gi|191167708|ref|ZP_03029516.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A]
 gi|190902221|gb|EDV61962.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A]
 gi|323948386|gb|EGB44371.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H120]
          Length = 388

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPQIHAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283


>gi|317405763|gb|EFV86054.1| penicillin-binding protein [Achromobacter xylosoxidans C54]
          Length = 385

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 80/317 (25%), Positives = 154/317 (48%), Gaps = 13/317 (4%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPR-YPASLTKMM 84
           +L   +L  +  M    ++   +P  S+   +++D    Q+        R  PASLTK+M
Sbjct: 5   KLAASLLVATACMSGALAQSMPQPDLSAKAWLLLDETSGQVIASHAATARIEPASLTKIM 64

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNP--SKLYLKEKTYFTTEQGILALITRSAND 142
           T Y++F  + +K+L  + ++ +S  A    P  SK++L+  +  + +Q +  L+ +S ND
Sbjct: 65  TAYVVFGAIHNKELSPDQKVVISTRAWKVPPGSSKMFLEPGSRVSVDQLLRGLMIQSGND 124

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E +SGS + F   M++ A ++G+  T + +  GL D    +T  D +IL     
Sbjct: 125 AAIALAEAVSGSVEAFVARMNDTAVQLGLHGTHFASPHGLPDPGTYSTVSDLSILATRFI 184

Query: 203 KNFPQYYKYF-SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD- 260
           +++PQ YK + S + + Y N    N N+LL    ++DG+KTG+T  +G+ IV +    + 
Sbjct: 185 RDYPQLYKTYDSAKTYTYNNITQPNRNRLLWLDPSVDGLKTGHTDAAGYCIVATAHRPNG 244

Query: 261 ---DPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKK 317
                ++ VV+G  + + R Q++ EL+      +     + + K    +T          
Sbjct: 245 KEQRRLITVVVGTASDKLRTQESRELLEWGF--QGFNTIKLYAKGQAVATPEVWKGQADT 302

Query: 318 LKRTYSQFKKIDAKAHS 334
           LK  +++   +   A +
Sbjct: 303 LKAGFARDAYVTVPAGA 319


>gi|331677915|ref|ZP_08378590.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli H591]
 gi|331074375|gb|EGI45695.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli H591]
          Length = 390

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 71/285 (24%), Positives = 141/285 (49%), Gaps = 14/285 (4%)

Query: 22  IYIQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEP 74
           + ++R + +   +   ++        I  + +       S +++D    Q+     + + 
Sbjct: 1   MLLKRRLIIAASLFVFNLSSGFAAENIPFSPQPPQIHAGSWVLMDYTTGQILTAGNEHQQ 60

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTT 128
           R PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    + 
Sbjct: 61  RNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
                 LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q 
Sbjct: 121 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRN 247
           ++A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  
Sbjct: 181 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSG 240

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +GFN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 AGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 285


>gi|209919474|ref|YP_002293558.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli SE11]
 gi|209912733|dbj|BAG77807.1| penicillin binding protein 6 [Escherichia coli SE11]
          Length = 390

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 71/285 (24%), Positives = 141/285 (49%), Gaps = 14/285 (4%)

Query: 22  IYIQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEP 74
           + ++R + +   +   ++        I  + +       S +++D    Q+     + + 
Sbjct: 1   MLLKRRLIIAASLFVFNLSSGFAAENIPFSPQPPQIHAGSWVLMDYTTGQILTAGNEHQQ 60

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTT 128
           R PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    + 
Sbjct: 61  RNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
                 LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q 
Sbjct: 121 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRN 247
           ++A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  
Sbjct: 181 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSG 240

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +GFN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 AGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 285


>gi|253687572|ref|YP_003016762.1| Beta-lactamase [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|261822396|ref|YP_003260502.1| D-alanyl-D-alanine carboxypeptidase fraction A [Pectobacterium
           wasabiae WPP163]
 gi|251754150|gb|ACT12226.1| Beta-lactamase [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|261606409|gb|ACX88895.1| Beta-lactamase [Pectobacterium wasabiae WPP163]
          Length = 403

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 86/285 (30%), Positives = 145/285 (50%), Gaps = 19/285 (6%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGF-K 70
           S + +R    +G +L +S    + A +++ K            S I+ID N  ++     
Sbjct: 7   SRFTKR--TALGALLVISASSFAYAEDINLKTMIPGVPQIDAESYILIDYNSGKVLAEMN 64

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKT 124
            D  R PASLTKMMT Y+I + ++S K+  N  + V K A        Q  S ++LK   
Sbjct: 65  ADTRRDPASLTKMMTSYVIGQAIKSGKISPNDIVTVGKDAWATGNPTFQGSSLMFLKPGD 124

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
                Q    +I +S ND   A  ++++GS+  F  LM+   K +G+QNT ++   GL  
Sbjct: 125 RVPVSQLNRGIILQSGNDACVAMADYVAGSQDAFVNLMNGYVKALGLQNTNFETVHGLDA 184

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTG 243
             Q ++ARD A++G  L ++ P+ Y  +  ++F + N    N N LL     N+DGIKTG
Sbjct: 185 PGQFSSARDMALIGQALIRDVPEEYATYKEKEFTFNNIRQPNRNGLLWDSSLNVDGIKTG 244

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +T ++GFN+V S       +++ V+G   ++ R+ ++ +L+T   
Sbjct: 245 HTSSAGFNLVASATEGQMRLISAVLGGRNAKGRESESKKLLTWGF 289


>gi|205353205|ref|YP_002227006.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205272986|emb|CAR37933.1| penicillin-binding protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326628291|gb|EGE34634.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 390

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 74/278 (26%), Positives = 139/278 (50%), Gaps = 8/278 (2%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPAS 79
            ++I  ++  M     L+   +S A +  A    + +++D    Q+     + + R PAS
Sbjct: 6   RLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +      
Sbjct: 66  LTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSR 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI  S ND   A  ++I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D
Sbjct: 126 GLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYD 185

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNI 252
            A+L   +    P++Y  +S +   +      N N LL  K  +IDG+KTG+T  +GFN+
Sbjct: 186 LAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNL 245

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           + S       ++AVVMG  +S+ R+++A +L+    + 
Sbjct: 246 IASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQN 283


>gi|218708731|ref|YP_002416352.1| putative Penicillin-binding protein [Vibrio splendidus LGP32]
 gi|218321750|emb|CAV17705.1| putative Penicillin-binding protein [Vibrio splendidus LGP32]
          Length = 393

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 86/258 (33%), Positives = 143/258 (55%), Gaps = 8/258 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           F + I++  A ++ AK     +++D +  ++   K+ +    PASLTKMMT Y++ + L+
Sbjct: 27  FAAPIIVPDAPQIAAK---GFVLMDYHSGKVLAEKEMNTQLSPASLTKMMTSYVVGQELE 83

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              ++LN  + +S+ A  +N    SK++++  T    E+    +I +S ND   A  E I
Sbjct: 84  RGNINLNDDVVISENAWAKNFPDSSKMFIEVGTTVKVEELNRGIIIQSGNDACVAMAEHI 143

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  F  LM+  A  IGM++T + N  GL + N  +T  D A+LG  L ++ P  Y+ 
Sbjct: 144 AGSEDAFVDLMNAWASSIGMKDTHFANVHGLDNPNLYSTPYDMALLGQALIRDVPDEYRI 203

Query: 212 FSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL  K  N+DGIKTG+T N+G+++V+S       +VAVVMG 
Sbjct: 204 YSQKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLVAVVMGT 263

Query: 271 PTSQERDQKALELITSFL 288
             +  R  ++ +L++   
Sbjct: 264 KNANARKTESKKLLSYGF 281


>gi|323968145|gb|EGB63554.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli M863]
          Length = 388

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVGRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283


>gi|50120239|ref|YP_049406.1| D-alanyl-D-alanine carboxypeptidase fraction A [Pectobacterium
           atrosepticum SCRI1043]
 gi|49610765|emb|CAG74210.1| D-alanine carboxypeptidase [Pectobacterium atrosepticum SCRI1043]
          Length = 403

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 86/285 (30%), Positives = 145/285 (50%), Gaps = 19/285 (6%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGF-K 70
           S + +R    +G +L +S    + A +++ K            S I+ID N  ++     
Sbjct: 7   SRFTKR--TALGALLVISASSFAYAEDINLKTMIPGVPQIDAESYILIDYNSGKVLAEMN 64

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKT 124
            D  R PASLTKMMT Y+I + ++S K+  N  + V K A        Q  S ++LK   
Sbjct: 65  ADTRRDPASLTKMMTSYVIGQAIKSGKISPNDIVTVGKDAWATGNPTFQGSSLMFLKPGD 124

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
                Q    +I +S ND   A  ++++GS+  F  LM+   K +G+QNT ++   GL  
Sbjct: 125 RVPVSQLNRGIILQSGNDACVAMADYVAGSQDAFVNLMNGYVKALGLQNTNFETVHGLDA 184

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTG 243
             Q ++ARD A++G  L ++ P+ Y  +  ++F + N    N N LL     N+DGIKTG
Sbjct: 185 PGQFSSARDMALIGQALIRDVPEEYATYKEKEFTFNNIRQPNRNGLLWDSSLNVDGIKTG 244

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +T ++GFN+V S       +++ V+G   ++ R+ ++ +L+T   
Sbjct: 245 HTSSAGFNLVASATEGQMRLISAVLGGRNAKGRESESKKLLTWGF 289


>gi|293415304|ref|ZP_06657947.1| dacD [Escherichia coli B185]
 gi|291432952|gb|EFF05931.1| dacD [Escherichia coli B185]
 gi|323168855|gb|EFZ54535.1| D-alanyl-D-alanine carboxypeptidase dacD [Shigella sonnei 53G]
          Length = 390

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 71/285 (24%), Positives = 141/285 (49%), Gaps = 14/285 (4%)

Query: 22  IYIQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEP 74
           + ++R + +   +   ++        I  + +       S +++D    Q+     + + 
Sbjct: 1   MLLKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQ 60

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTT 128
           R PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    + 
Sbjct: 61  RNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
                 LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q 
Sbjct: 121 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRN 247
           ++A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  
Sbjct: 181 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSG 240

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +GFN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 AGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 285


>gi|323152399|gb|EFZ38687.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli EPECa14]
          Length = 390

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 71/285 (24%), Positives = 142/285 (49%), Gaps = 14/285 (4%)

Query: 22  IYIQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEP 74
           + ++R + +   +   ++        I  + +       S +++D    Q+     + + 
Sbjct: 1   MLLKRRLIIAASLFIFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQ 60

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTT 128
           R PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    + 
Sbjct: 61  RNPASLTKLMTGYVVDRTIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
                 LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q 
Sbjct: 121 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRN 247
           ++A D A+L   +  + P++Y  +S +   +      N N LL  K  N+DG+KTG+T  
Sbjct: 181 SSAYDLAVLSRAIIHDEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSG 240

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +GFN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 AGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 285


>gi|309702334|emb|CBJ01656.1| penicillin-binding protein 6B [Escherichia coli ETEC H10407]
          Length = 388

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFIFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283


>gi|148244582|ref|YP_001219276.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326409|dbj|BAF61552.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 375

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 91/274 (33%), Positives = 155/274 (56%), Gaps = 14/274 (5%)

Query: 36  FLSIIMISMASELHAK-------PKYSSI---VIDVNKNQMTGF-KQDEPRYPASLTKMM 84
           FL+I++ S    + A        P+ S++   ++D N  ++    KQ   R PASLTK+M
Sbjct: 9   FLTILICSFTLNIQAAIFITPKAPEISAVAYSIVDYNSGKVIASNKQHYKRAPASLTKLM 68

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T Y+IF+ + + ++ L  ++ +SK A     SK +++       E  +  +I +S ND +
Sbjct: 69  TAYVIFQLISNDRIKLEDEVRISKKAWKTGGSKSFVEVGKTMKLETLLKGMIIQSGNDSA 128

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  E I+G E  F   M+  A+K+GM N+ ++NASGL D NQ TTA D  +L   + K+
Sbjct: 129 VALAEHIAGDESTFTTYMNKYARKLGMNNSQFRNASGLPDNNQYTTAADIVLLATAIIKD 188

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           FPQ+Y ++S ++F Y      N NKLL   H +DG+KTG+T+ +G+N+V S +     ++
Sbjct: 189 FPQFYLWYSEKEFTYHGIKQYNRNKLLWNDHTVDGLKTGFTKKAGYNLVASAKRLGMRLI 248

Query: 265 AVVMGMPTSQERDQKALELIT---SFLEKKTLKH 295
           +VV+G  +  +R  +  +++     F E KT+++
Sbjct: 249 SVVLGSSSVNDRTSQTQKILDYGFRFFETKTIRN 282


>gi|218690072|ref|YP_002398284.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli ED1a]
 gi|218427636|emb|CAR08547.2| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli ED1a]
          Length = 388

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 72/283 (25%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  NIDG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNIDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283


>gi|218558891|ref|YP_002391804.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli S88]
 gi|218365660|emb|CAR03397.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli S88]
          Length = 388

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPQIQAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283


>gi|312973749|ref|ZP_07787921.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 1827-70]
 gi|310332344|gb|EFP99579.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 1827-70]
          Length = 390

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 71/285 (24%), Positives = 140/285 (49%), Gaps = 14/285 (4%)

Query: 22  IYIQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEP 74
           + ++R + +   +   ++        I  + +       S +++D    Q+     + + 
Sbjct: 1   MLLKRRLIIAASLFVFNLSSGFAAENIPFSPQPPQIHAGSWVLMDYTTGQILTAGNEHQQ 60

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTT 128
           R PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    + 
Sbjct: 61  RNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
                 LI  S ND   A  ++I+G +++F  +M+N A+K+ + +T ++   GL    Q 
Sbjct: 121 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLNDTHFETVHGLDAPGQH 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRN 247
           ++A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  
Sbjct: 181 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSG 240

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +GFN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 AGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 285


>gi|220920397|ref|YP_002495698.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Methylobacterium nodulans ORS 2060]
 gi|219945003|gb|ACL55395.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Methylobacterium nodulans ORS 2060]
          Length = 498

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 120/287 (41%), Positives = 176/287 (61%), Gaps = 2/287 (0%)

Query: 51  KPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
            P ++++V+DV   ++     +D  R+PAS+TK+MTLY++FE L+  ++ L+T + +S  
Sbjct: 45  NPPFAAMVVDVKSGRILHAVNEDALRHPASITKVMTLYLLFEQLERGRMSLDTPLEISAN 104

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           AA Q PSKL L+     T E+ I AL+T+SANDV+ A GE I+GSE  FA +M+ KA  +
Sbjct: 105 AARQAPSKLGLRPGATITVEEAIKALVTKSANDVACAIGENIAGSEGAFAEMMTRKAHAL 164

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM  T Y NASGL D +QITTARD  IL   ++  FP+YY+YF  R F +R R+I NHN 
Sbjct: 165 GMTRTHYANASGLPDSDQITTARDLTILARAIQDRFPRYYRYFQTRSFAFRGRVIGNHNH 224

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           LL ++  +DGIKTGYTR+SGFN++TS R  D  IVAVV+G  +   RD     L+ + L 
Sbjct: 225 LLGRVEGVDGIKTGYTRDSGFNLMTSARINDRHIVAVVLGGKSVASRDAIMTRLVEANLP 284

Query: 290 KKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
           K     + T     ++    + +++ +K   T +     D +  S +
Sbjct: 285 KAYAGARTTAPVVEVAERP-RPAVVAEKPVATRTLVAAADGEDESIE 330


>gi|157155424|ref|YP_001463361.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E24377A]
 gi|157077454|gb|ABV17162.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E24377A]
 gi|323961778|gb|EGB57379.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H489]
          Length = 388

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283


>gi|260855992|ref|YP_003229883.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O26:H11 str.
           11368]
 gi|257754641|dbj|BAI26143.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O26:H11 str.
           11368]
          Length = 388

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 141/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFIFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRTIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +  + P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHDEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283


>gi|16765392|ref|NP_461007.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62180641|ref|YP_217058.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|167990972|ref|ZP_02572071.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168259641|ref|ZP_02681614.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|197251570|ref|YP_002147019.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|224583442|ref|YP_002637240.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|585694|sp|P37604|DACD_SALTY RecName: Full=D-alanyl-D-alanine carboxypeptidase dacD;
           Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
           Full=Penicillin-binding protein 6B; Short=PBP-6B; Flags:
           Precursor
 gi|16420593|gb|AAL20966.1| DD-carboxypeptidase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|62128274|gb|AAX65977.1| DD-carboxypeptidase, penicillin-binding protein 6b [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|197215273|gb|ACH52670.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|205330511|gb|EDZ17275.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205350814|gb|EDZ37445.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|224467969|gb|ACN45799.1| DD-carboxypeptidase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261247276|emb|CBG25100.1| penicillin-binding protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994112|gb|ACY88997.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158623|emb|CBW18134.1| penicillin-binding protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913053|dbj|BAJ37027.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321224707|gb|EFX49770.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322715112|gb|EFZ06683.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323130385|gb|ADX17815.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988997|gb|AEF07980.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 390

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 74/278 (26%), Positives = 139/278 (50%), Gaps = 8/278 (2%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPAS 79
            ++I  ++  M     L+   +S A +  A    + +++D    Q+     + + R PAS
Sbjct: 6   RLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +      
Sbjct: 66  LTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSR 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI  S ND   A  ++I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D
Sbjct: 126 GLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYD 185

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNI 252
            A+L   +    P++Y  +S +   +      N N LL  K  +IDG+KTG+T  +GFN+
Sbjct: 186 LAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNL 245

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           + S       ++AVVMG  +S+ R+++A +L+    + 
Sbjct: 246 IASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQN 283


>gi|167551002|ref|ZP_02344757.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|168242129|ref|ZP_02667061.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168466288|ref|ZP_02700158.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168818250|ref|ZP_02830250.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194445713|ref|YP_002041329.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194448664|ref|YP_002046110.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|207857497|ref|YP_002244148.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|194404376|gb|ACF64598.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194406968|gb|ACF67187.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|195631235|gb|EDX49795.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|205324074|gb|EDZ11913.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205338413|gb|EDZ25177.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205345154|gb|EDZ31918.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|206709300|emb|CAR33640.1| penicillin-binding protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 390

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 74/278 (26%), Positives = 139/278 (50%), Gaps = 8/278 (2%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPAS 79
            ++I  ++  M     L+   +S A +  A    + +++D    Q+     + + R PAS
Sbjct: 6   RLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +      
Sbjct: 66  LTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSR 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI  S ND   A  ++I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D
Sbjct: 126 GLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYD 185

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNI 252
            A+L   +    P++Y  +S +   +      N N LL  K  +IDG+KTG+T  +GFN+
Sbjct: 186 LAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNL 245

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           + S       ++AVVMG  +S+ R+++A +L+    + 
Sbjct: 246 IASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQN 283


>gi|15802489|ref|NP_288515.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7
           EDL933]
 gi|12516188|gb|AAG57069.1|AE005426_11 penicillin binding protein 6b [Escherichia coli O157:H7 str.
           EDL933]
          Length = 390

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 71/285 (24%), Positives = 141/285 (49%), Gaps = 14/285 (4%)

Query: 22  IYIQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEP 74
           + ++R + +   +   ++        I  + +       S +++D    Q+     + + 
Sbjct: 1   MLLKRRLIIAASLFIFNLSXGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQ 60

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTT 128
           R PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    + 
Sbjct: 61  RNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
                 LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q 
Sbjct: 121 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRN 247
           ++A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  
Sbjct: 181 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSG 240

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +GFN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 AGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 285


>gi|323940908|gb|EGB37096.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E482]
          Length = 388

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIQAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+++ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAERLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283


>gi|323495455|ref|ZP_08100532.1| D-alanyl-D-alanine carboxypeptidase [Vibrio brasiliensis LMG 20546]
 gi|323310378|gb|EGA63565.1| D-alanyl-D-alanine carboxypeptidase [Vibrio brasiliensis LMG 20546]
          Length = 392

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 88/258 (34%), Positives = 141/258 (54%), Gaps = 8/258 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           F S I++  A ++ AK     +++D +  ++   K+ +    PASLTKMMT Y+I + L+
Sbjct: 26  FASPIVVPDAPQIAAK---GYVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELE 82

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              + L   + +SK A  +N    SK++++  T    E     +I +S ND   A  E I
Sbjct: 83  RGNISLQDDVTISKNAWAKNFPDSSKMFIEVGTTVKVEDLNRGIIIQSGNDACVAMAEHI 142

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  F  LM+  A  IGM++T + N  GL + N  +T  D A+LG  L ++ P+ Y+ 
Sbjct: 143 AGSEDAFVDLMNAWADTIGMKDTHFANVHGLDNSNLYSTPYDMALLGSALIRDVPEEYRI 202

Query: 212 FSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL  K  N+DGIKTG+T N+G+++V+S       +VAVVMG 
Sbjct: 203 YSEKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLVAVVMGT 262

Query: 271 PTSQERDQKALELITSFL 288
             +  R  ++ +L++   
Sbjct: 263 KNANARKSESKKLLSYGF 280


>gi|149925918|ref|ZP_01914181.1| Serine-type D-Ala-D-Ala carboxypeptidase [Limnobacter sp. MED105]
 gi|149825206|gb|EDM84417.1| Serine-type D-Ala-D-Ala carboxypeptidase [Limnobacter sp. MED105]
          Length = 397

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 98/340 (28%), Positives = 176/340 (51%), Gaps = 25/340 (7%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMISMASE----LHAKPKYSS---IVIDVNKNQMTGFKQD 72
           G    +R++  +  +L L I + + A+     +   P+  +   +++D+   Q       
Sbjct: 5   GISRFKRHVGQLSLVLGLGIGVATQAAAQSSVMPPPPEIGAKGYMLLDLTTGQTLAEFNS 64

Query: 73  -EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
            E   PASLTK+MT Y+ F  L+SK++ ++ Q+PVS  A     S+++++     T E+ 
Sbjct: 65  RERLDPASLTKLMTAYMAFAALESKQIRMDQQVPVSPYAWKAEGSRMFIEPNKPVTVEEL 124

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +I +S ND S A  E ++G E  FA LM+ +AK++G+ +T +KN++GL D    TTA
Sbjct: 125 LYGVIVQSGNDASRAIAELLAGDENNFATLMNQQAKRLGLTDTNFKNSTGLPDPQHYTTA 184

Query: 192 RDQAILGILLRKNFPQYY-KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           RD  IL   +  +FP+YY K +S +++ Y      N N+LL    ++DG+KTG+T ++G+
Sbjct: 185 RDLGILAKRIITDFPEYYKKMYSTKEYTYNGIRQPNRNRLLWIDPSVDGMKTGHTESAGY 244

Query: 251 NIVTSLRYK-----DDPIVAVVMGMPTSQERDQKALELITSFLE-KKTLKHQQTHRKDNL 304
            +V+S         D  +++VV+G  + Q R Q++L+L+    +  +T+K     +  + 
Sbjct: 245 CLVSSANRTLPNGVDRRLLSVVLGTTSDQARTQESLKLMNYGYQMFETVKLYSAKQAIST 304

Query: 305 SST----------SLKKSLMIKKLKRTYSQFKKIDAKAHS 334
           S             + K L+I   +    Q K    K  +
Sbjct: 305 SEVYKGQAKEVKLGVNKDLLINVPRGMAKQLKATVEKKGT 344


>gi|15832066|ref|NP_310839.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           Sakai]
 gi|168764096|ref|ZP_02789103.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4501]
 gi|168777102|ref|ZP_02802109.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4196]
 gi|168784009|ref|ZP_02809016.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4076]
 gi|188025184|ref|ZP_02997384.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4113]
 gi|189402596|ref|ZP_03006773.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4401]
 gi|189403423|ref|ZP_03007084.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4486]
 gi|189406210|ref|ZP_03008107.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC508]
 gi|208810754|ref|ZP_03252630.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4206]
 gi|208816718|ref|ZP_03257838.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4045]
 gi|208818499|ref|ZP_03258819.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4042]
 gi|209397891|ref|YP_002271183.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4115]
 gi|209447203|ref|YP_002274288.1| penicillin-binding protein 6b [Stx2-converting phage 1717]
 gi|217329693|ref|ZP_03445772.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. TW14588]
 gi|261256444|ref|ZP_05948977.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283247|ref|YP_003500065.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O55:H7
           str. CB9615]
 gi|293410371|ref|ZP_06653947.1| dacD [Escherichia coli B354]
 gi|13362280|dbj|BAB36235.1| penicillin binding protein 6b [Escherichia coli O157:H7 str. Sakai]
 gi|187767572|gb|EDU31416.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4196]
 gi|188014404|gb|EDU52526.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4113]
 gi|188998746|gb|EDU67732.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4076]
 gi|189354737|gb|EDU73156.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4401]
 gi|189360801|gb|EDU79220.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4486]
 gi|189365830|gb|EDU84246.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4501]
 gi|189375987|gb|EDU94403.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC508]
 gi|208725270|gb|EDZ74977.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4206]
 gi|208731061|gb|EDZ79750.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4045]
 gi|208738622|gb|EDZ86304.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4042]
 gi|209159291|gb|ACI36724.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4115]
 gi|209361182|gb|ACI43175.1| penicillin-binding protein 6b [Escherichia coli O157:H7]
 gi|209748254|gb|ACI72434.1| penicillin binding protein 6b [Escherichia coli]
 gi|209748256|gb|ACI72435.1| penicillin binding protein 6b [Escherichia coli]
 gi|209748258|gb|ACI72436.1| penicillin binding protein 6b [Escherichia coli]
 gi|217317461|gb|EEC25890.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. TW14588]
 gi|284922011|emb|CBG35089.1| penicillin-binding protein 6B [Escherichia coli 042]
 gi|290763120|gb|ADD57081.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O55:H7
           str. CB9615]
 gi|291470839|gb|EFF13323.1| dacD [Escherichia coli B354]
          Length = 390

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 71/285 (24%), Positives = 141/285 (49%), Gaps = 14/285 (4%)

Query: 22  IYIQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEP 74
           + ++R + +   +   ++        I  + +       S +++D    Q+     + + 
Sbjct: 1   MLLKRRLIIAASLFIFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQ 60

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTT 128
           R PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    + 
Sbjct: 61  RNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
                 LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q 
Sbjct: 121 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRN 247
           ++A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  
Sbjct: 181 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSG 240

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +GFN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 AGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 285


>gi|332278836|ref|ZP_08391249.1| penicillin-binding protein 6B [Shigella sp. D9]
 gi|332101188|gb|EGJ04534.1| penicillin-binding protein 6B [Shigella sp. D9]
          Length = 390

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 71/285 (24%), Positives = 141/285 (49%), Gaps = 14/285 (4%)

Query: 22  IYIQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEP 74
           + ++R + +   +   ++        I  + +       S +++D    Q+     + + 
Sbjct: 1   MLLKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQ 60

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTT 128
           R PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    + 
Sbjct: 61  RNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
                 LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q 
Sbjct: 121 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRN 247
           ++A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  
Sbjct: 181 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSG 240

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +GFN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 AGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 285


>gi|26248385|ref|NP_754425.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli CFT073]
 gi|237704469|ref|ZP_04534950.1| penicillin-binding protein 6B [Escherichia sp. 3_2_53FAA]
 gi|26108789|gb|AAN80992.1|AE016762_245 Penicillin-binding protein 6B precursor [Escherichia coli CFT073]
 gi|226900835|gb|EEH87094.1| penicillin-binding protein 6B [Escherichia sp. 3_2_53FAA]
          Length = 390

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 71/285 (24%), Positives = 141/285 (49%), Gaps = 14/285 (4%)

Query: 22  IYIQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEP 74
           + ++R + +   +   ++        I  + +       S +++D    Q+     + + 
Sbjct: 1   MLLKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQ 60

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTT 128
           R PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    + 
Sbjct: 61  RNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
                 LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q 
Sbjct: 121 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRN 247
           ++A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  
Sbjct: 181 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSG 240

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +GFN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 AGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 285


>gi|238913456|ref|ZP_04657293.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 390

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 74/278 (26%), Positives = 139/278 (50%), Gaps = 8/278 (2%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPAS 79
            ++I  ++  M     L+   +S A +  A    + +++D    Q+     + + R PAS
Sbjct: 6   RLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +      
Sbjct: 66  LTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSR 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI  S ND   A  ++I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D
Sbjct: 126 GLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYD 185

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNI 252
            A+L   +    P++Y  +S +   +      N N LL  K  +IDG+KTG+T  +GFN+
Sbjct: 186 LAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNL 245

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           + S       ++AVVMG  +S+ R+++A +L+    + 
Sbjct: 246 IASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQN 283


>gi|168790220|ref|ZP_02815227.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC869]
 gi|195939526|ref|ZP_03084908.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           EC4024]
 gi|254793720|ref|YP_003078557.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           TW14359]
 gi|261226456|ref|ZP_05940737.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|189370276|gb|EDU88692.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC869]
 gi|226237417|dbj|BAH46939.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli O55:H7]
 gi|254593120|gb|ACT72481.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli O157:H7 str. TW14359]
 gi|320188186|gb|EFW62850.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320641418|gb|EFX10862.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           G5101]
 gi|320646787|gb|EFX15664.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H- str.
           493-89]
 gi|320652066|gb|EFX20409.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H- str.
           H 2687]
 gi|320657428|gb|EFX25226.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320663244|gb|EFX30549.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 388

 Score =  294 bits (754), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFIFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283


>gi|218699400|ref|YP_002407029.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli IAI39]
 gi|218369386|emb|CAR17143.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli IAI39]
          Length = 388

 Score =  294 bits (754), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLTIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283


>gi|256017815|ref|ZP_05431680.1| D-alanyl-D-alanine carboxypeptidase [Shigella sp. D9]
          Length = 388

 Score =  294 bits (754), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283


>gi|110642224|ref|YP_669954.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli 536]
 gi|191170002|ref|ZP_03031556.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11]
 gi|227887061|ref|ZP_04004866.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli 83972]
 gi|110343816|gb|ABG70053.1| penicillin-binding protein 6B precursor [Escherichia coli 536]
 gi|190909518|gb|EDV69103.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11]
 gi|227835411|gb|EEJ45877.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli 83972]
 gi|307554080|gb|ADN46855.1| DD-carboxypeptidase [Escherichia coli ABU 83972]
 gi|323956179|gb|EGB51930.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H263]
          Length = 388

 Score =  294 bits (754), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283


>gi|89108830|ref|AP_002610.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K-12
           substr. W3110]
 gi|162135904|ref|NP_416514.4| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli str. K-12 substr. MG1655]
 gi|170081640|ref|YP_001730960.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238901200|ref|YP_002926996.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli BW2952]
 gi|3183515|sp|P33013|DACD_ECOLI RecName: Full=D-alanyl-D-alanine carboxypeptidase dacD;
           Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
           Full=Penicillin-binding protein 6b; Short=PBP-6b; Flags:
           Precursor
 gi|85675189|dbj|BAA15838.2| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K12
           substr. W3110]
 gi|87082022|gb|AAC75071.2| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli str. K-12 substr. MG1655]
 gi|169889475|gb|ACB03182.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238860731|gb|ACR62729.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli BW2952]
 gi|260448889|gb|ACX39311.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli DH1]
 gi|315136643|dbj|BAJ43802.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli DH1]
 gi|332343793|gb|AEE57127.1| D-alanyl-D-alanine carboxypeptidase DacD [Escherichia coli UMNK88]
          Length = 388

 Score =  294 bits (754), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283


>gi|227114414|ref|ZP_03828070.1| D-alanyl-D-alanine carboxypeptidase fraction A [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
 gi|227327371|ref|ZP_03831395.1| D-alanyl-D-alanine carboxypeptidase fraction A [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 403

 Score =  294 bits (754), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 85/285 (29%), Positives = 145/285 (50%), Gaps = 19/285 (6%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGF-K 70
           S + +R    +G +L +S    + A +++ K            S I+ID N  ++     
Sbjct: 7   SRFTKR--TALGALLAISASSFAYAEDINLKTMIPGVPQIDAESYILIDYNSGKVLAEMN 64

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKT 124
            D  R PASLTKMMT Y+I + ++S K+  N  + V K A        Q  S ++LK   
Sbjct: 65  ADTRRDPASLTKMMTSYVIGQAIKSGKISPNDIVTVGKDAWATGNPTFQGSSLMFLKPGD 124

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
                Q    +I +S ND   A  ++++GS+  F  LM+   K +G++NT ++   GL  
Sbjct: 125 RVPVSQLNRGIILQSGNDACVAMADYVAGSQDAFVNLMNGYVKALGLKNTNFETVHGLDA 184

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTG 243
             Q ++ARD A++G  L ++ P+ Y  +  ++F + N    N N LL     N+DGIKTG
Sbjct: 185 PGQFSSARDMALIGQALIRDVPEEYATYKEKEFTFNNIRQPNRNGLLWDSSLNVDGIKTG 244

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +T ++GFN+V S       +++ V+G   ++ R+ ++ +L+T   
Sbjct: 245 HTSSAGFNLVASATEGQMRLISAVLGGRNAKGRESESKKLLTWGF 289


>gi|163740370|ref|ZP_02147764.1| D-alanyl-D-alanine carboxypeptidase family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161386228|gb|EDQ10603.1| D-alanyl-D-alanine carboxypeptidase family protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 550

 Score =  294 bits (754), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 102/269 (37%), Positives = 155/269 (57%), Gaps = 4/269 (1%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           ++G ++FLS++  +    + A   Y+++VID    ++   +  D   +PASLTKMMTLYI
Sbjct: 47  VLGLVIFLSMVATAPPGAMAAP--YAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYI 104

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            FE +++ ++ L+T++ +S+ AA++ PSKL LK          I A   +SAND +TA G
Sbjct: 105 AFEAVRNGEISLDTKVKISRNAASEQPSKLGLKTGQRIAFRYLIRAAAVKSANDAATAIG 164

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E ++GSE  FA  M+  AK +GM  T +KNA GL  K  ++TARD   LG  L  ++P+Y
Sbjct: 165 ETLAGSEAAFARRMTRTAKALGMSRTTFKNAHGLTQKGHMSTARDMTTLGRHLLYDYPEY 224

Query: 209 YKYFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           Y  FS R      R + N N +LL      DGIKTGYTR +GFN+V S    ++ ++A V
Sbjct: 225 YNLFSRRSADAGVRKVPNTNRRLLAAYRGADGIKTGYTRAAGFNLVASAERGNERVIATV 284

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKHQ 296
            G  +S  R+ K  EL+     +   + +
Sbjct: 285 FGGKSSTSRNAKVAELLDLGFRRAPSRAK 313


>gi|200388770|ref|ZP_03215382.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|199605868|gb|EDZ04413.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
          Length = 390

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 74/278 (26%), Positives = 139/278 (50%), Gaps = 8/278 (2%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPAS 79
            ++I  ++  M     L+   +S A +  A    + +++D    Q+     + + R PAS
Sbjct: 6   RLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +      
Sbjct: 66  LTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSR 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI  S ND   A  ++I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D
Sbjct: 126 GLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYD 185

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNI 252
            A+L   +    P++Y  +S +   +      N N LL  K  +IDG+KTG+T  +GFN+
Sbjct: 186 LAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNL 245

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           + S       ++AVVMG  +S+ R+++A +L+    + 
Sbjct: 246 IASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQN 283


>gi|168229376|ref|ZP_02654434.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194472812|ref|ZP_03078796.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194459176|gb|EDX48015.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|205335852|gb|EDZ22616.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 390

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 74/278 (26%), Positives = 139/278 (50%), Gaps = 8/278 (2%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPAS 79
            ++I  ++  M     L+   +S A +  A    + +++D    Q+     + + R PAS
Sbjct: 6   RLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +      
Sbjct: 66  LTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSR 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI  S ND   A  ++I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D
Sbjct: 126 GLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYD 185

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNI 252
            A+L   +    P++Y  +S +   +      N N LL  K  +IDG+KTG+T  +GFN+
Sbjct: 186 LAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNL 245

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           + S       ++AVVMG  +S+ R+++A +L+    + 
Sbjct: 246 IASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQN 283


>gi|198246188|ref|YP_002216147.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197940704|gb|ACH78037.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|326623893|gb|EGE30238.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 390

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 74/278 (26%), Positives = 139/278 (50%), Gaps = 8/278 (2%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPAS 79
            ++I  ++  M     L+   +S A +  A    + +++D    Q+     + + R PAS
Sbjct: 6   RLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +      
Sbjct: 66  LTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSR 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI  S ND   A  ++I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D
Sbjct: 126 GLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYD 185

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNI 252
            A+L   +    P++Y  +S +   +      N N LL  K  +IDG+KTG+T  +GFN+
Sbjct: 186 LAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNL 245

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           + S       ++AVVMG  +S+ R+++A +L+    + 
Sbjct: 246 IASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQN 283


>gi|261253676|ref|ZP_05946249.1| D-alanyl-D-alanine carboxypeptidase [Vibrio orientalis CIP 102891]
 gi|260937067|gb|EEX93056.1| D-alanyl-D-alanine carboxypeptidase [Vibrio orientalis CIP 102891]
          Length = 392

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 88/258 (34%), Positives = 140/258 (54%), Gaps = 8/258 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           F S I++  A ++ AK     +++D +  ++   K+ +    PASLTKMMT Y+I + L+
Sbjct: 26  FASPIVVPDAPQIAAK---GYVLMDFHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELE 82

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              + L   + +SK A  +N    SK++++  T    E     +I +S ND   A  E I
Sbjct: 83  RGNISLQDDVTISKNAWAKNFPDSSKMFIEVGTTVKVEDLNRGIIVQSGNDACVAMAEHI 142

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  F  LM+  A  IGM++T + N  GL + N  +T  D A+LG  L ++ P  Y+ 
Sbjct: 143 AGSEDAFVDLMNAWADTIGMKDTHFANVHGLDNPNLYSTPYDMALLGSALIRDVPDEYRI 202

Query: 212 FSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL  K  N+DGIKTG+T N+G+++V+S       +VAVVMG 
Sbjct: 203 YSDKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGQMRLVAVVMGT 262

Query: 271 PTSQERDQKALELITSFL 288
             +  R  ++ +L++   
Sbjct: 263 KNANARKSESKKLLSYGF 280


>gi|54310018|ref|YP_131038.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
           profundum SS9]
 gi|46914457|emb|CAG21236.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
           profundum SS9]
          Length = 391

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 78/267 (29%), Positives = 141/267 (52%), Gaps = 8/267 (2%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMT 85
           +   ++  S    ++ + +   P+ ++   I++D N  ++      DE  +PASLTKM+T
Sbjct: 12  IASALMLTSASAAAIPTVVPEAPQIAAKAYILMDYNSGKIIAENNSDEKLHPASLTKMLT 71

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSAND 142
            Y+I + ++S  + L+ ++ VS  A  +N    SK++L+     T ++    +I +S ND
Sbjct: 72  SYVIGQEIKSGNISLDDKVSVSNNAWAKNFPGSSKMFLEPGKLVTVQELNKGIIIQSGND 131

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
             TA  E I+GS   F  LM+  AK+IGM+++ + N  GL + +  +TA D A L   + 
Sbjct: 132 ACTAMAEHIAGSTGSFVELMNAWAKRIGMESSHFVNVHGLDNDDHFSTAHDMATLAQAVI 191

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           ++ P  Y  +  + F Y      N N LL  K  N+DG+KTG+T  +G+++V S      
Sbjct: 192 RDVPDEYAIYKEKSFTYNGITQYNRNGLLWDKSLNVDGMKTGHTDQAGYSLVASAYEGKM 251

Query: 262 PIVAVVMGMPTSQERDQKALELITSFL 288
            +++VVMG  ++  R  ++ +L+    
Sbjct: 252 RLISVVMGTKSANARKAESKKLLNYGF 278


>gi|242239720|ref|YP_002987901.1| beta-lactamase [Dickeya dadantii Ech703]
 gi|242131777|gb|ACS86079.1| Beta-lactamase [Dickeya dadantii Ech703]
          Length = 401

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 73/278 (26%), Positives = 133/278 (47%), Gaps = 14/278 (5%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGF-KQDEPRYPASLTKMMT 85
           +M           S A +  A P+  +   I++D    ++      DE   PASLTK+MT
Sbjct: 14  VMAASFLTLFSPSSYAEQPSAPPQIDAKAFILMDATSGRVLAELNADERLDPASLTKIMT 73

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRS 139
            Y++ + +++ K+  + ++ V   A        +  S ++LK             ++ +S
Sbjct: 74  SYVVGQAIKAGKIKPDDRVTVGSDAWANGNPSLRGSSLMFLKPGDQILVSDLNKGMVIQS 133

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND S A  ++++GS++ F  LM+  A  +G+ N+ +    GL    Q +TARD + L  
Sbjct: 134 GNDASIALADYVAGSQQAFISLMNQYAASLGLSNSHFLTVHGLDTPGQYSTARDMSRLTQ 193

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRY 258
            L ++ P  Y   S + F +      N N+LL      +DG+KTG+T  +G+N+V+S   
Sbjct: 194 ALIRDLPDEYALHSEKAFTFNKINQPNRNRLLWSATLRVDGVKTGFTHGAGYNLVSSAVE 253

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITS---FLEKKTL 293
               ++AVV+G  +   R +++ +L+     F E  T+
Sbjct: 254 GGTRLIAVVLGSSSDAIRFRESEKLLAWGFRFFETVTV 291


>gi|170683658|ref|YP_001743130.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli SMS-3-5]
 gi|331647659|ref|ZP_08348751.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli M605]
 gi|331663510|ref|ZP_08364420.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli TA143]
 gi|170521376|gb|ACB19554.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli SMS-3-5]
 gi|281179111|dbj|BAI55441.1| penicillin binding protein 6 [Escherichia coli SE15]
 gi|323161927|gb|EFZ47801.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli E128010]
 gi|323187689|gb|EFZ72990.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli RN587/1]
 gi|331043383|gb|EGI15521.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli M605]
 gi|331059309|gb|EGI31286.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli TA143]
          Length = 390

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 71/285 (24%), Positives = 141/285 (49%), Gaps = 14/285 (4%)

Query: 22  IYIQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEP 74
           + ++R + +   +   ++        I  + +       S +++D    Q+     + + 
Sbjct: 1   MLLKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQ 60

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTT 128
           R PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    + 
Sbjct: 61  RNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
                 LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q 
Sbjct: 121 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRN 247
           ++A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  
Sbjct: 181 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSG 240

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +GFN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 AGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 285


>gi|163737219|ref|ZP_02144637.1| Serine-type D-Ala-D-Ala carboxypeptidase [Phaeobacter gallaeciensis
           BS107]
 gi|161389823|gb|EDQ14174.1| Serine-type D-Ala-D-Ala carboxypeptidase [Phaeobacter gallaeciensis
           BS107]
          Length = 529

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 102/269 (37%), Positives = 155/269 (57%), Gaps = 4/269 (1%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           ++G ++FLS++  +    + A   Y+++VID    ++   +  D   +PASLTKMMTLYI
Sbjct: 26  VLGLVIFLSMVATAPPGAMAAP--YAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYI 83

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            FE +++ ++ L+T++ +S+ AA++ PSKL LK          I A   +SAND +TA G
Sbjct: 84  AFEAVRNGEISLDTKVKISRNAASEQPSKLGLKTGQRIAFRYLIRAAAVKSANDAATAIG 143

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E ++GSE  FA  M+  AK +GM  T +KNA GL  K  ++TARD   LG  L  ++P+Y
Sbjct: 144 ETLAGSEAAFARRMTRTAKALGMSRTTFKNAHGLTQKGHMSTARDMTTLGRHLLYDYPEY 203

Query: 209 YKYFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           Y  FS R      R + N N +LL      DGIKTGYTR +GFN+V S    ++ ++A V
Sbjct: 204 YNLFSRRSTDAGVRKVPNTNRRLLAAYRGADGIKTGYTRAAGFNLVASAERGNERVIATV 263

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKHQ 296
            G  +S  R+ K  EL+     +   + +
Sbjct: 264 FGGKSSTSRNAKVAELLDLGFRRAPSRAK 292


>gi|153001830|ref|YP_001367511.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS185]
 gi|160876563|ref|YP_001555879.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS195]
 gi|151366448|gb|ABS09448.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS185]
 gi|160862085|gb|ABX50619.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS195]
          Length = 391

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 78/275 (28%), Positives = 145/275 (52%), Gaps = 9/275 (3%)

Query: 23  YIQRNIQLMGKILFLSIIMISM----ASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYP 77
           +++  I+ +  I   S+ + +       +  +    + +++D N  Q+       E   P
Sbjct: 4   FVKSPIKTLLLISSASLPVYAAQPIITPDAPSVAAKAFVLMDYNSGQIIAESNAYESLNP 63

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           ASLTKMMT Y+I + +++  + ++  + +SK A ++N    SK++++  T          
Sbjct: 64  ASLTKMMTSYVIGQEIKAGNVSVDDDVTISKNAWSKNFSDSSKMFIEVGTTVKVGDLNRG 123

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +I +S ND   A  E I+G+E  F  +M++ AK++GM+++ ++NA GL  +N  +TA D 
Sbjct: 124 IIIQSGNDACVAMAEHIAGTEGAFVDMMNSWAKQLGMRDSYFENAHGLDAENHKSTAYDM 183

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIV 253
           A+LG  L ++ P  Y  +S + + +      N N LL     N+DGIKTG+T  +G+N+V
Sbjct: 184 ALLGAALIRDVPDEYHIYSEKFYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGYNLV 243

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            S       +++VVMG  +   R  ++ +L+T   
Sbjct: 244 ASATKDGMRLISVVMGTQSESARKAESKKLLTYGF 278


>gi|217972275|ref|YP_002357026.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS223]
 gi|217497410|gb|ACK45603.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS223]
          Length = 391

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 77/275 (28%), Positives = 145/275 (52%), Gaps = 9/275 (3%)

Query: 23  YIQRNIQLMGKILFLSIIMISM----ASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYP 77
           +++  I+ +  I   S+ + +       +  +    + +++D N  Q+       E   P
Sbjct: 4   FVKSPIKTLLLISSASLPVYAAQPIITPDAPSVAAKAFVLMDYNSGQIIAESNAYESLNP 63

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           ASLTKMMT Y+I + +++  + ++  + +SK A ++N    SK++++  T          
Sbjct: 64  ASLTKMMTSYVIGQEIKAGNVSVDDDVTISKNAWSKNFSDSSKMFIEVGTTVKVGDLNRG 123

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +I +S ND   A  E I+G+E  F  +M++ AK++GM+++ ++NA GL  +N  +TA D 
Sbjct: 124 IIIQSGNDACVAMAEHIAGTEGAFVDMMNSWAKQLGMRDSYFENAHGLDAENHKSTAYDM 183

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIV 253
           A+LG  L ++ P  Y  +S + + +      N N LL     ++DGIKTG+T  +G+N+V
Sbjct: 184 ALLGAALIRDVPDEYHIYSEKFYTFNGIKQYNRNGLLWDNSMDVDGIKTGHTSGAGYNLV 243

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            S       +++VVMG  +   R  ++ +L+T   
Sbjct: 244 ASATKDGMRLISVVMGTQSESARKAESKKLLTYGF 278


>gi|304397023|ref|ZP_07378902.1| Beta-lactamase [Pantoea sp. aB]
 gi|304355172|gb|EFM19540.1| Beta-lactamase [Pantoea sp. aB]
          Length = 420

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 74/277 (26%), Positives = 136/277 (49%), Gaps = 11/277 (3%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMT-GFKQDEPRYPA 78
           +  R        L +   +   A +  A P     + I+ID    ++      D+   PA
Sbjct: 26  FSSRLRHFAATSLLILAPISVFAEQAPAAPGIDAKAWILIDYASGKVLTESSADQRLDPA 85

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGI 132
           SLTKMMT Y++ + +++ K+  +  + V + A        +  S ++LK        +  
Sbjct: 86  SLTKMMTSYVVGQAIKAGKIKPDDLVTVGQDAWATGNPKLRGSSLMFLKPGDRIPVHELN 145

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             ++ +S ND   A  ++++GS+  F  LM+N  K +G+QNT +    GL  + Q +TAR
Sbjct: 146 KGIVIQSGNDACIALADYVAGSQDSFIGLMNNYVKALGLQNTHFMTVHGLDAEGQYSTAR 205

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFN 251
           D A++   L ++ P+ Y     ++F + N    N N+LL   +  +DG+KTG+T  +G N
Sbjct: 206 DMALIAQALIRDVPEEYALNKEKEFTFNNIRQINRNRLLWSTNLKVDGVKTGHTSGAGNN 265

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +V S    D  +++VV+G  +   R +++ +L+T   
Sbjct: 266 LVASATEGDMRLISVVLGTASDAIRFRESEKLLTWGF 302


>gi|284009241|emb|CBA76342.1| penicillin-binding protein [Arsenophonus nasoniae]
          Length = 418

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 83/291 (28%), Positives = 154/291 (52%), Gaps = 23/291 (7%)

Query: 27  NIQLMGKILFLSII-----------MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEP 74
           ++ L+  ++F S +           +I  A  + A+   + I+ID    ++   +  D+ 
Sbjct: 27  SLILITSLIFSSTLFANSNNAMQINVIPSAPNIDAE---AYILIDYYSGKVLAERNADQR 83

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTT 128
           R PASLTKMMT YII + +++ K+ +N  + + + A        +  S ++LK     + 
Sbjct: 84  RDPASLTKMMTSYIIGQTIKAGKISMNDIVTIDENAWATGNPVFKGSSLMFLKPGDRVSV 143

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            Q I  +  +S ND   A  E+++G E  F  LM++  +++G++NT +    GL    Q 
Sbjct: 144 SQLIRGINLQSGNDACVAMAEYVAGDEASFVKLMNDNVQRLGLKNTHFLTVHGLDADGQY 203

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRN 247
           ++ARD A++G  L ++ P+ Y  +  ++F +      N N LL  K  N+DGIKTG+T  
Sbjct: 204 SSARDMALIGQALIRDVPEEYAIYKEKEFTFNKIRQLNRNGLLWDKSLNVDGIKTGHTSA 263

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE-KKTLKHQQ 297
           +G+N+V S    +  +++V++G  +S+ RD ++ +L+T      +T+K  Q
Sbjct: 264 AGYNLVASATEGNMRLISVILGGHSSKGRDAESKKLLTWGFRFFETVKPLQ 314


>gi|228909907|ref|ZP_04073728.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis IBL 200]
 gi|228849742|gb|EEM94575.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis IBL 200]
          Length = 396

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 159/309 (51%), Gaps = 22/309 (7%)

Query: 24  IQRNIQ-LMGKILFLSIIMISMA-------------SELHAKPKYSSIVIDVNKNQMTGF 69
           ++R    L+  +L LS   +S A             +   A+   S+IVI+ +  ++   
Sbjct: 1   MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+ AA+   S+++L+     T 
Sbjct: 61  KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            + +  +   S ND S A  E I+GSE+ F  +M+ KAK +G++NT ++N +GL  K+  
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTG 243
           +TA D AI+   L K +P   KY       +R+   +   + N NKL+     +DG+KTG
Sbjct: 181 STANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 239

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
           +T  + + +  S +     +++VVMG PTS+ER+ +  +L+     +   K   T R + 
Sbjct: 240 FTTEAKYCLTASAQKNGMRVISVVMGAPTSKERNNEVTKLLDYAFGQYMTKKLYT-RGEK 298

Query: 304 LSSTSLKKS 312
           + +  + K 
Sbjct: 299 IKTVQVGKG 307


>gi|320086495|emb|CBY96266.1| DD-carboxypeptidase, penicillin-binding protein 6B [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 390

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 74/278 (26%), Positives = 139/278 (50%), Gaps = 8/278 (2%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPAS 79
            ++I  ++  M     L+   +S A +  A    + +++D    Q+     + + R PAS
Sbjct: 6   RLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +      
Sbjct: 66  LTKLMTGYVVDHAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSR 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI  S ND   A  ++I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D
Sbjct: 126 GLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYD 185

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNI 252
            A+L   +    P++Y  +S +   +      N N LL  K  +IDG+KTG+T  +GFN+
Sbjct: 186 LAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNL 245

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           + S       ++AVVMG  +S+ R+++A +L+    + 
Sbjct: 246 IASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQN 283


>gi|311278994|ref|YP_003941225.1| Beta-lactamase [Enterobacter cloacae SCF1]
 gi|308748189|gb|ADO47941.1| Beta-lactamase [Enterobacter cloacae SCF1]
          Length = 395

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 71/279 (25%), Positives = 136/279 (48%), Gaps = 8/279 (2%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPA 78
           G ++I  ++   G     +   + +     A    + +++D    Q+     + + R PA
Sbjct: 10  GRMFIAVSLLASGISCAFAADALPITVSPPAIQAGAWVLMDYTTGQILTAGNEHQQRNPA 69

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN------PSKLYLKEKTYFTTEQGI 132
           SLTK+MT Y++   + S+K+  +  + V   A  +        S ++LK     T     
Sbjct: 70  SLTKLMTGYVVDRAIDSRKITPDDMVTVGHDAWAKGNPVFDGSSLMFLKPGDRLTVRDLS 129

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             LI  S ND   A  ++++G + +F  LM+   +K+G+++T ++   GL    Q ++A 
Sbjct: 130 RGLIVDSGNDACVALADYVAGGQPQFVQLMNGYVQKLGLKDTHFETVHGLDAPGQHSSAY 189

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFN 251
           D A+L   +    P +Y  +S +   +      N N LL  K  N+DG+KTG+T  +GFN
Sbjct: 190 DLAVLSRAIIHGEPDFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFN 249

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           ++ S    +  ++AVVMG  +++ R+++A +L+    + 
Sbjct: 250 LIASAVDGERRLIAVVMGAESAKGREEQARKLLHWGQQN 288


>gi|194428756|ref|ZP_03061292.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B171]
 gi|194436027|ref|ZP_03068129.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1]
 gi|215487233|ref|YP_002329664.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218554572|ref|YP_002387485.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli IAI1]
 gi|218705552|ref|YP_002413071.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli UMN026]
 gi|293405492|ref|ZP_06649484.1| dacD [Escherichia coli FVEC1412]
 gi|298381180|ref|ZP_06990779.1| dacD [Escherichia coli FVEC1302]
 gi|307312424|ref|ZP_07592058.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli W]
 gi|312967243|ref|ZP_07781459.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 2362-75]
 gi|331668710|ref|ZP_08369558.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli TA271]
 gi|194413203|gb|EDX29489.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B171]
 gi|194424755|gb|EDX40740.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1]
 gi|215265305|emb|CAS09700.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218361340|emb|CAQ98928.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli IAI1]
 gi|218432649|emb|CAR13544.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli UMN026]
 gi|222033782|emb|CAP76523.1| Penicillin-binding protein 6B [Escherichia coli LF82]
 gi|291427700|gb|EFF00727.1| dacD [Escherichia coli FVEC1412]
 gi|298278622|gb|EFI20136.1| dacD [Escherichia coli FVEC1302]
 gi|306907595|gb|EFN38098.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli W]
 gi|312288051|gb|EFR15955.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 2362-75]
 gi|312946640|gb|ADR27467.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315061285|gb|ADT75612.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli W]
 gi|320193299|gb|EFW67937.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli WV_060327]
 gi|323378135|gb|ADX50403.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli KO11]
 gi|330911850|gb|EGH40360.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli AA86]
 gi|331063904|gb|EGI35815.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli TA271]
          Length = 388

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283


>gi|75762410|ref|ZP_00742280.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|218899237|ref|YP_002447648.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           G9842]
 gi|228967109|ref|ZP_04128145.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar sotto str. T04001]
 gi|74490103|gb|EAO53449.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|218543204|gb|ACK95598.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           G9842]
 gi|228792478|gb|EEM40044.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 396

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 159/309 (51%), Gaps = 22/309 (7%)

Query: 24  IQRNIQ-LMGKILFLSIIMISMA-------------SELHAKPKYSSIVIDVNKNQMTGF 69
           ++R    L+  +L LS   +S A             +   A+   S+IVI+ +  ++   
Sbjct: 1   MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+ AA+   S+++L+     T 
Sbjct: 61  KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            + +  +   S ND S A  E I+GSE+ F  +M+ KAK +G++NT ++N +GL  K+  
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTG 243
           +TA D AI+   L K +P   KY       +R+   +   + N NKL+     +DG+KTG
Sbjct: 181 STANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 239

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
           +T  + + +  S +     +++VVMG PTS+ER+ +  +L+     +   K   T R + 
Sbjct: 240 FTTEAKYCLTASAQKNGMRVISVVMGAPTSKERNNEVTKLLDYAFGQYMTKKLYT-RGEK 298

Query: 304 LSSTSLKKS 312
           + +  + K 
Sbjct: 299 IKTVQVGKG 307


>gi|167579652|ref|ZP_02372526.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis TXDOH]
          Length = 375

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 87/313 (27%), Positives = 154/313 (49%), Gaps = 24/313 (7%)

Query: 42  ISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKK 97
            + A      P     S +++D + NQ+      DE   PASLTK+MT Y++FE L SKK
Sbjct: 4   ATYAPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDSKK 63

Query: 98  LHLNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
           + +   +  S+      ++ S+++++     +    +  +I +S ND + A  E + GSE
Sbjct: 64  ITMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 123

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
            +F  +M+ +A+++GM +T + + +G+ D N  TTA D A L   L +++P YY  FS++
Sbjct: 124 AQFVNMMNAQAQRLGMTHTHFADVNGMPDPNHYTTAGDLATLSTHLIRDYPDYYNIFSVK 183

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK-------DDPIVAVVM 268
           +F Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +            +V V+M
Sbjct: 184 EFTYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRSLPGAADATRRLVTVMM 243

Query: 269 GMPTSQERDQKALELI----TSFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKK 317
           G     +R Q +++++    T+F   +  K  Q          K N     +KK   I  
Sbjct: 244 GETKESDRVQDSMKMLNYGYTAFDSVRLYKAGQPIDTPRVYKGKSNNVQVGVKKDQFITV 303

Query: 318 LKRTYSQFKKIDA 330
            +    + K   A
Sbjct: 304 PRGLADKVKPEVA 316


>gi|163803893|ref|ZP_02197734.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. AND4]
 gi|159172307|gb|EDP57194.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. AND4]
          Length = 392

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 87/258 (33%), Positives = 137/258 (53%), Gaps = 8/258 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           F S +++  A ++ AK     +++D N  ++   K+ +    PASLTKMMT Y+I + L 
Sbjct: 26  FASPVVVPDAPQIAAK---GYVLMDYNSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELA 82

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              +  +  + +SK A  +N    SK++++  T          +I +S ND   A  E I
Sbjct: 83  RGNISEDDDVTISKNAWAKNFPDSSKMFIEVGTTVKVHDLNRGIIIQSGNDACVAMAEHI 142

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  F  LM+  A  IGM+NT + N  GL + N  +T  D A LG  L ++ P  Y+ 
Sbjct: 143 AGSEDAFVDLMNAWADTIGMKNTHFANVHGLDNPNLYSTPYDMAQLGKALIRDVPDEYRI 202

Query: 212 FSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL  K  N+DGIKTG+T N+G+++V+S       +VAVVMG 
Sbjct: 203 YSDKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGQMRLVAVVMGT 262

Query: 271 PTSQERDQKALELITSFL 288
             +  R  ++ +L++   
Sbjct: 263 KDANARKSESKKLLSYGF 280


>gi|307946404|ref|ZP_07661739.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Roseibium sp.
           TrichSKD4]
 gi|307770068|gb|EFO29294.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Roseibium sp.
           TrichSKD4]
          Length = 492

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 122/311 (39%), Positives = 182/311 (58%), Gaps = 1/311 (0%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTK 82
           I R+++++G  L ++ +  +  +   A  KY+ IV+D    +       D  RYPASLTK
Sbjct: 9   ISRHVRIVGSALLIAGMTAAGTAPAAANSKYAGIVVDAKTGKTLYADSADAYRYPASLTK 68

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MTLYI+FE L++ +L LN++  VSK A+ + PSK+ L+       +  ILAL+T+SAND
Sbjct: 69  IMTLYIVFEELEAGRLSLNSKFKVSKNASKEPPSKIGLRPGQTIKVKDAILALVTKSAND 128

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
           V+T   E I+GSE KFA  M+N A+++GM+ T ++NA GL +  Q TTARD + LGI ++
Sbjct: 129 VATTVAENIAGSEAKFAKRMTNTARQLGMKRTTFRNAHGLPNSRQRTTARDMSRLGIAIQ 188

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           + FP+YYKYF+ R + Y+ R   NHNKLL ++  +DGIKTGY R SGFN+VTS+      
Sbjct: 189 ERFPKYYKYFNTRVYSYKGRRYGNHNKLLGRVKGVDGIKTGYIRASGFNLVTSVNRNGRH 248

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTY 322
           IVAVVMG  T   R++    LI  +L K +   +       +       +  +K +    
Sbjct: 249 IVAVVMGGRTGASRNRHMTNLIGRYLHKASKGRKSAPLVAKVKRQPAFVAASMKNVPMPN 308

Query: 323 SQFKKIDAKAH 333
            +      K  
Sbjct: 309 GKPGSKTIKTS 319


>gi|218695635|ref|YP_002403302.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli 55989]
 gi|218352367|emb|CAU98141.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli 55989]
          Length = 388

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAVNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283


>gi|165924684|ref|ZP_02220516.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|166009807|ref|ZP_02230705.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166211384|ref|ZP_02237419.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167419833|ref|ZP_02311586.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424129|ref|ZP_02315882.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|270487038|ref|ZP_06204112.1| serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pestis KIM D27]
 gi|294503318|ref|YP_003567380.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Z176003]
 gi|165923744|gb|EDR40876.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991203|gb|EDR43504.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166207155|gb|EDR51635.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166962574|gb|EDR58595.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167056978|gb|EDR66741.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|262361357|gb|ACY58078.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis D106004]
 gi|262365105|gb|ACY61662.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis D182038]
 gi|270335542|gb|EFA46319.1| serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pestis KIM D27]
 gi|294353777|gb|ADE64118.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Z176003]
          Length = 400

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 76/254 (29%), Positives = 134/254 (52%), Gaps = 11/254 (4%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLN 101
             A ++ AK   + +++D N  ++      + R  PASLTK+M+ Y+I + +++ K+  +
Sbjct: 32  PAAPQIDAK---AYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPD 88

Query: 102 TQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
             + V K A        +  S ++LK             ++ +S ND S A  ++++GS+
Sbjct: 89  DLVTVGKDAWATGNPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQ 148

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             F  LM+N AK +G+ NT +    GL    Q +TARD A+LG  L ++ P+ Y     +
Sbjct: 149 DSFVGLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEK 208

Query: 216 KFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           +F +     TN N+LL     N+DG+KTGYT  +G+N+V S       +++VV+G P+ +
Sbjct: 209 EFTFNKIRQTNRNRLLWNSSLNVDGMKTGYTNGAGYNLVASATDGPMRLISVVLGAPSDK 268

Query: 275 ERDQKALELITSFL 288
            R  ++ +L+T   
Sbjct: 269 VRFSESEKLLTWGF 282


>gi|90406825|ref|ZP_01215017.1| putative D-alanyl-D-alanine carboxypeptidase [Psychromonas sp.
           CNPT3]
 gi|90312062|gb|EAS40155.1| putative D-alanyl-D-alanine carboxypeptidase [Psychromonas sp.
           CNPT3]
          Length = 385

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 85/281 (30%), Positives = 153/281 (54%), Gaps = 11/281 (3%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEP-RYPASLT 81
           + + L+   L  S+  ++    +   P  ++   +++D +  ++      +    PASLT
Sbjct: 2   KRLGLLFVGLAFSVNALATPRVIPNAPVIAAKAYLLVDFDSGKVLAENNSQKILAPASLT 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITR 138
           KMMT YII   L+   +H + ++ +S+ A ++N    SK++++     + +     +I +
Sbjct: 62  KMMTSYIIGNELKVGNIHRDDKVLISEKAWSKNFPESSKMFIEVGKEVSVDDLNHGIIIQ 121

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND   A  E+I+GSE  F  LM++ A ++GM NT + N+ GL+ K+  TTA+D A L 
Sbjct: 122 SGNDACVAMAEYIAGSEGAFVDLMNSWAIQLGMNNTHFMNSHGLNAKDHYTTAQDMATLA 181

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLR 257
             L ++ P+ YK +S + F+Y      N N LL  K  N+DG+KTG+T  +G+++V+S  
Sbjct: 182 KALIRDLPEEYKLYSKKSFKYNGIEQYNRNGLLWDKSLNVDGLKTGHTDAAGYSLVSSAV 241

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITS---FLEKKTLKH 295
             D  +++VVMG  +S  R+ ++ +++     F E  T  H
Sbjct: 242 KGDMRLISVVMGTRSSTARNVESKKILNWGFRFFETLTPYH 282


>gi|107023825|ref|YP_622152.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia
           AU 1054]
 gi|105894014|gb|ABF77179.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Burkholderia cenocepacia AU 1054]
          Length = 529

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 86/312 (27%), Positives = 152/312 (48%), Gaps = 21/312 (6%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  A         S +++D   N +      DE   PASLTK+MT Y++FE L  KK+ +
Sbjct: 162 MPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISM 221

Query: 101 NTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
              +  S       ++ S+++++     +    +  +I +S ND + A  E + GSE +F
Sbjct: 222 EQIVTPSDAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQF 281

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+++A ++GM+ T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F+
Sbjct: 282 VTMMNDEAGRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYSIFSEKEFK 341

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY------KDDPIVAVVMGMPT 272
           Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +           +V+V+MG   
Sbjct: 342 YNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEQK 401

Query: 273 SQERDQKALELIT----SFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKKLKRT 321
             ER Q +++++     +F   +  K  Q          KDN     +K        +  
Sbjct: 402 ESERTQDSMKMLNYGYSAFDSVRLFKGGQAISTPRIYKGKDNTVQVGVKGDQWATVPRGL 461

Query: 322 YSQFK-KIDAKA 332
             + K ++D  A
Sbjct: 462 GDKVKTEVDVNA 473


>gi|153830932|ref|ZP_01983599.1| penicillin-binding protein 5 [Vibrio cholerae 623-39]
 gi|148873587|gb|EDL71722.1| penicillin-binding protein 5 [Vibrio cholerae 623-39]
          Length = 354

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 86/263 (32%), Positives = 140/263 (53%), Gaps = 8/263 (3%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
           +    F S I+   A ++ AK     +++D +  ++   K+ D    PASLTKMMT Y+I
Sbjct: 20  LSSTAFASPIVTPDAPQIAAK---GYVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVI 76

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            + ++   + LN  + +SK A  +N    SK++++  T          +I +S ND   A
Sbjct: 77  GQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVA 136

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E ++G+E  F  LM+  A  +GM+N+ + N+ GL D N  +T  D A+LG  L ++ P
Sbjct: 137 MAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVP 196

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           + Y  +S +KF Y      N N LL  K  N+DGIKTG+T  +G+N+V+S    +  +VA
Sbjct: 197 EEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVA 256

Query: 266 VVMGMPTSQERDQKALELITSFL 288
           VVMG      R  ++ +L++   
Sbjct: 257 VVMGTDNENARKAESKKLLSYGF 279


>gi|302382572|ref|YP_003818395.1| serine-type D-Ala-D-Ala carboxypeptidase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193200|gb|ADL00772.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 514

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 95/244 (38%), Positives = 141/244 (57%), Gaps = 1/244 (0%)

Query: 53  KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +Y++IV+D    ++      D  RYPAS+TKMMTLY++FE L+   +HL+  I VS  AA
Sbjct: 42  RYAAIVVDAGTGEVLFARHADSQRYPASVTKMMTLYLVFEALEKGTVHLDDVITVSPLAA 101

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +Q PSKL L        +  + A   RSAND++    E I GS+ +FA L + KA+++GM
Sbjct: 102 SQPPSKLGLAAGQTIRLDDAMRATTVRSANDMAMVLAEHIGGSQARFAALATLKAQELGM 161

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
             T Y N +GL D  Q+T+ARD AIL   + +++PQYY YF I  + Y+ R   N N LL
Sbjct: 162 GQTRYVNPNGLPDSRQLTSARDLAILSRAIMRDYPQYYSYFGIHDWTYQGREYRNTNGLL 221

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
              +  DGIKTG+T  SG+N+  S       ++ +V+G  +S  R+     L+ +  E +
Sbjct: 222 LGGNGYDGIKTGFTNASGYNLAASAVRGGKRVITIVLGGRSSITRNAHVAALMDTGFEVE 281

Query: 292 TLKH 295
           T + 
Sbjct: 282 TRRA 285


>gi|306814866|ref|ZP_07449028.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli NC101]
 gi|305852260|gb|EFM52712.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli NC101]
          Length = 388

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWAKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283


>gi|323936908|gb|EGB33191.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1520]
          Length = 388

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKNLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283


>gi|330445965|ref|ZP_08309617.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding
           protein 5 [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490156|dbj|GAA04114.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding
           protein 5 [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 391

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 79/273 (28%), Positives = 142/273 (52%), Gaps = 5/273 (1%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
            ++    +  +  + F ++   S+  +         +++D N  Q+   K  +E   PAS
Sbjct: 6   PLFSLVGVTALCTVSFSALAAPSVIPDAPTLSAKGYVLMDYNTGQVLVEKNANEKLNPAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALI 136
           LTK+MT Y+  + ++   +  +  + +S+ A  +N    SK++++  +          LI
Sbjct: 66  LTKLMTSYVAGQEMKQGNISKDDVVVISRNAWARNFPDSSKMFIEVGSEVPLMDLFRGLI 125

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E ++GSE+ F  LM++ AKK+GM ++ + N  GL   +  TT  D A+
Sbjct: 126 IQSGNDASVAIAEHVAGSEQAFVGLMNSWAKKLGMNSSHFANPHGLDHGDLYTTPYDIAL 185

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTS 255
           LG  L ++ P  Y  +S + F Y N    N N LL +K  N+DG+KTGYT  +G+++ +S
Sbjct: 186 LGQALIRDLPNIYPLYSEKSFTYNNITQRNRNGLLHDKSMNVDGMKTGYTSGAGYSLTSS 245

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
               D  ++AVVMG  +++ R+ ++  L+    
Sbjct: 246 ATEGDMRLIAVVMGTKSTKIRESESKALLNYGF 278


>gi|157376621|ref|YP_001475221.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella sediminis
           HAW-EB3]
 gi|157318995|gb|ABV38093.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella sediminis
           HAW-EB3]
          Length = 395

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 84/280 (30%), Positives = 148/280 (52%), Gaps = 10/280 (3%)

Query: 14  FLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD- 72
           F   P  ++ +   +       + + ++   A  + AK   + I++D N  Q+   +   
Sbjct: 8   FFNRPLKTLILATTVA--CSFAYAAPVVTPNAPTVAAK---AFILMDYNTGQVIAEENAY 62

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTE 129
           E   PASLTKMMT Y+I   ++   +  + ++ +SK A ++N    SK++++     T +
Sbjct: 63  ESLNPASLTKMMTSYVIGHEIKVGNISPDDKVTISKKAWSKNFPDSSKMFIEVGKQVTVD 122

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
                +I +S ND   A  E I+G+E  F  LM++ +K++GM+++ ++N+ GL  +N  T
Sbjct: 123 DLNHGIIIQSGNDACVAMAEHIAGTEDGFVDLMNSWSKQLGMEDSYFENSHGLDSENHKT 182

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNS 248
           TA D A+LG  L ++ P+ Y  +  + F Y +    N N LL  K  N+DGIKTG+T  +
Sbjct: 183 TAYDMALLGAALIRDVPEEYVLYKKKSFTYNSIKQYNRNGLLWDKSMNVDGIKTGHTSGA 242

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           G+N+VTS       +VAVVMG  +   R  ++ +++    
Sbjct: 243 GYNLVTSATKDGMRLVAVVMGTKSESARKAESKKILNYGF 282


>gi|170019661|ref|YP_001724615.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli ATCC 8739]
 gi|169754589|gb|ACA77288.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli ATCC
           8739]
          Length = 388

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 139/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL     N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDNTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283


>gi|186894765|ref|YP_001871877.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Yersinia
           pseudotuberculosis PB1/+]
 gi|186697791|gb|ACC88420.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Yersinia
           pseudotuberculosis PB1/+]
          Length = 401

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 76/254 (29%), Positives = 134/254 (52%), Gaps = 11/254 (4%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLN 101
             A ++ AK   + +++D N  ++      + R  PASLTK+M+ Y+I + +++ K+  +
Sbjct: 33  PAAPQIDAK---AYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPD 89

Query: 102 TQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
             + V K A        +  S ++LK             ++ +S ND S A  ++++GS+
Sbjct: 90  DLVTVGKDAWATGNPALRGSSLMFLKPGDQVKVSDLNKGIVIQSGNDASIALADYVAGSQ 149

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             F  LM+N AK +G+ NT +    GL    Q +TARD A+LG  L ++ P+ Y     +
Sbjct: 150 DSFVGLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEK 209

Query: 216 KFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           +F +     TN N+LL     N+DG+KTGYT  +G+N+V S       +++VV+G P+ +
Sbjct: 210 EFTFNKIRQTNRNRLLWNSSLNVDGMKTGYTNGAGYNLVASATDGPMRLISVVLGAPSDK 269

Query: 275 ERDQKALELITSFL 288
            R  ++ +L+T   
Sbjct: 270 VRFSESEKLLTWGF 283


>gi|153947077|ref|YP_001401624.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pseudotuberculosis IP
           31758]
 gi|152958572|gb|ABS46033.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pseudotuberculosis IP
           31758]
          Length = 400

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 76/254 (29%), Positives = 134/254 (52%), Gaps = 11/254 (4%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLN 101
             A ++ AK   + +++D N  ++      + R  PASLTK+M+ Y+I + +++ K+  +
Sbjct: 32  PAAPQIDAK---AYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPD 88

Query: 102 TQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
             + V K A        +  S ++LK             ++ +S ND S A  ++++GS+
Sbjct: 89  DLVTVGKDAWATGNPALRGSSLMFLKPGDQVKVSDLNKGIVIQSGNDASIALADYVAGSQ 148

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             F  LM+N AK +G+ NT +    GL    Q +TARD A+LG  L ++ P+ Y     +
Sbjct: 149 DSFVGLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEK 208

Query: 216 KFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           +F +     TN N+LL     N+DG+KTGYT  +G+N+V S       +++VV+G P+ +
Sbjct: 209 EFTFNKIRQTNRNRLLWNSSLNVDGMKTGYTNGAGYNLVASATDGPMRLISVVLGAPSDK 268

Query: 275 ERDQKALELITSFL 288
            R  ++ +L+T   
Sbjct: 269 VRFSESEKLLTWGF 282


>gi|268590223|ref|ZP_06124444.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rettgeri DSM
           1131]
 gi|291314506|gb|EFE54959.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rettgeri DSM
           1131]
          Length = 401

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 85/318 (26%), Positives = 154/318 (48%), Gaps = 22/318 (6%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGF-KQDEPRYPASLTKMMTL 86
           +G  L +++   + A++    P+  +   +++D N  ++      DE   PASLTK+MT 
Sbjct: 15  IGLSLLVAVSTSAYAAQTPVAPQVDAKAFVLMDYNSGKILASGNPDERLDPASLTKIMTS 74

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSA 140
           Y+I + + + K+     + V + A        +  S ++LK K   +       ++ +S 
Sbjct: 75  YVIGQAVNAGKITPQDMVTVGEDAWATGNPVLKGSSLMFLKPKDRVSVLDLNKGIVIQSG 134

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND S A  ++++GS+  F  LM+   +KIG++NT +K   GL  + Q +TARD A+L   
Sbjct: 135 NDASIALADYVAGSQDSFVSLMNQYVQKIGLKNTHFKTVHGLDSEGQYSTARDMALLTQA 194

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYK 259
           + ++ P  Y     ++F +      N N+LL   +  +DG+KTG+T  +G N+V S    
Sbjct: 195 MIRDVPDEYALHKEKEFTFNKIRQPNRNRLLWNQNLKVDGVKTGHTSGAGHNLVASATEG 254

Query: 260 DDPIVAVVMGMPTSQERDQKALELITS---FLEK-------KTLKHQQTHRKD-NLSSTS 308
           D  +++VV+G P+ + R  ++ +L+T    F E         TLK Q+    D +     
Sbjct: 255 DMRLISVVLGAPSDRVRFSESEKLLTWGFRFFETVTPIKADATLKKQRVWFGDTSEVDLG 314

Query: 309 LKKSLMIKKLKRTYSQFK 326
           +   + I   K      K
Sbjct: 315 VADDVSITIPKGQLQNLK 332


>gi|109897877|ref|YP_661132.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudoalteromonas
           atlantica T6c]
 gi|109700158|gb|ABG40078.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Pseudoalteromonas atlantica T6c]
          Length = 390

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 84/256 (32%), Positives = 135/256 (52%), Gaps = 8/256 (3%)

Query: 41  MISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSK 96
             S A  +   P  S+   I++D    ++   +  D    PASLTKMMT Y+I + + + 
Sbjct: 23  AASAAVIIPDAPSVSAKGFILVDFQTGKVIAEQNSDIQIPPASLTKMMTSYVIGKEIANG 82

Query: 97  KLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            +     + +S+ A  +N    SK++++  T  +       +I +S ND   A  E I+G
Sbjct: 83  NIKDTDMVTISENAWAKNFPDSSKMFIEVGTQISVGDLNRGIIVQSGNDACVAMAEHIAG 142

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           SE  FA +M+  A+K+GM +T + N+ GL D +  TT RD A L   L  + P  YK +S
Sbjct: 143 SEDAFASMMNLHAEKLGMTSTHFVNSHGLQDADHYTTPRDMATLARALITDVPNEYKVYS 202

Query: 214 IRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F Y N    N N LL  K  N+DGIKTG+T ++G+++V+S    D  ++AVVMG  +
Sbjct: 203 EKEFTYNNIKQYNRNGLLWDKSLNVDGIKTGHTSDAGYSLVSSATQGDMRLIAVVMGADS 262

Query: 273 SQERDQKALELITSFL 288
            + R  +  +L+    
Sbjct: 263 ERARKVENKKLLKYGF 278


>gi|197264724|ref|ZP_03164798.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197242979|gb|EDY25599.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
          Length = 390

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 73/278 (26%), Positives = 139/278 (50%), Gaps = 8/278 (2%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPAS 79
            ++I  ++  M     L+   +S A +  A    + +++D    Q+     + + R PAS
Sbjct: 6   RLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +      
Sbjct: 66  LTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVHDLSR 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI  S ND   A  ++I+G + +F  +M++  KK+ +++T ++   GL    Q ++A D
Sbjct: 126 GLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLRDTHFETVHGLDAPGQHSSAYD 185

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNI 252
            A+L   +    P++Y  +S +   +      N N LL  K  +IDG+KTG+T  +GFN+
Sbjct: 186 LAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNL 245

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           + S       ++AVVMG  +S+ R+++A +L+    + 
Sbjct: 246 IASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQN 283


>gi|161502774|ref|YP_001569886.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864121|gb|ABX20744.1| hypothetical protein SARI_00825 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 390

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 74/278 (26%), Positives = 139/278 (50%), Gaps = 8/278 (2%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPAS 79
            ++I  ++  M     L+   +S A +  A    + +++D    Q+     + + R PAS
Sbjct: 6   RLFIAASLFAMHLSPALAADAVSFAPQPPAINAGAWVLMDYTTGQVLTAGNEHQQRNPAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +      
Sbjct: 66  LTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSR 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI  S ND   A  ++I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D
Sbjct: 126 GLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYD 185

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNI 252
            A+L   +    P++Y  +S +   +      N N LL  K  +IDG+KTG+T  +GFN+
Sbjct: 186 LAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNL 245

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           + S       ++AVVMG  +S+ R+++A +L+    + 
Sbjct: 246 IASAVDGQRRLIAVVMGAESSKGREEQARKLLQWGQQN 283


>gi|327253142|gb|EGE64796.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli STEC_7v]
          Length = 388

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283


>gi|238762044|ref|ZP_04623017.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia kristensenii
           ATCC 33638]
 gi|238699772|gb|EEP92516.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia kristensenii
           ATCC 33638]
          Length = 397

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 78/276 (28%), Positives = 137/276 (49%), Gaps = 10/276 (3%)

Query: 23  YIQRNIQLMGKILFLSIIMISMA--SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           +  + +     +LFLS+     A      A    + +++D N  ++      D+   PAS
Sbjct: 8   FKLKKLTFSAGLLFLSLPYAHAADSPVPPAIDAKAYVLMDYNSGKVLAEGNSDQRLDPAS 67

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGIL 133
           LTK+M+ Y+I + +++ K+H +  + V K A        +  S ++LK            
Sbjct: 68  LTKIMSSYVIGQAIKAGKVHPDDLVTVGKDAWATGNPALRGSSLMFLKPGDQVKLSDLNK 127

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            ++ +S ND S A  ++I+GS+  F  LM+  AK +G+ NT +    GL    Q +TA D
Sbjct: 128 GIVIQSGNDASIALADYIAGSQDSFVGLMNKYAKALGLNNTNFMTVHGLDAPGQYSTAHD 187

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNI 252
            A+LG  L ++ P  Y     ++F +      N N+LL   + N+DG+KTGYT  +G N+
Sbjct: 188 MAVLGQALIRDVPDEYALHKEKEFTFNKIRQINRNRLLWNTNINVDGMKTGYTTGAGHNL 247

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           V S       +++VV+G P+ + R  ++ +L+T   
Sbjct: 248 VASATDGPMRLISVVLGAPSDRVRFSESEKLLTWGF 283


>gi|51595692|ref|YP_069883.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pseudotuberculosis IP
           32953]
 gi|108812820|ref|YP_648587.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Nepal516]
 gi|145599648|ref|YP_001163724.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Pestoides F]
 gi|162419917|ref|YP_001606057.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Angola]
 gi|165936271|ref|ZP_02224840.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|167468020|ref|ZP_02332724.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis FV-1]
 gi|170024965|ref|YP_001721470.1| Serine-type D-Ala-D-Ala carboxypeptidase [Yersinia
           pseudotuberculosis YPIII]
 gi|229841277|ref|ZP_04461436.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843380|ref|ZP_04463526.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229895754|ref|ZP_04510924.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Pestoides A]
 gi|229903242|ref|ZP_04518355.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Nepal516]
 gi|51588974|emb|CAH20591.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pseudotuberculosis IP
           32953]
 gi|108776468|gb|ABG18987.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Yersinia pestis Nepal516]
 gi|145211344|gb|ABP40751.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Pestoides F]
 gi|162352732|gb|ABX86680.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Angola]
 gi|165915885|gb|EDR34493.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|169751499|gb|ACA69017.1| Serine-type D-Ala-D-Ala carboxypeptidase [Yersinia
           pseudotuberculosis YPIII]
 gi|229679012|gb|EEO75115.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Nepal516]
 gi|229689727|gb|EEO81788.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697643|gb|EEO87690.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229700677|gb|EEO88706.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Pestoides A]
          Length = 401

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 76/254 (29%), Positives = 134/254 (52%), Gaps = 11/254 (4%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLN 101
             A ++ AK   + +++D N  ++      + R  PASLTK+M+ Y+I + +++ K+  +
Sbjct: 33  PAAPQIDAK---AYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPD 89

Query: 102 TQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
             + V K A        +  S ++LK             ++ +S ND S A  ++++GS+
Sbjct: 90  DLVTVGKDAWATGNPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQ 149

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             F  LM+N AK +G+ NT +    GL    Q +TARD A+LG  L ++ P+ Y     +
Sbjct: 150 DSFVGLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEK 209

Query: 216 KFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           +F +     TN N+LL     N+DG+KTGYT  +G+N+V S       +++VV+G P+ +
Sbjct: 210 EFTFNKIRQTNRNRLLWNSSLNVDGMKTGYTNGAGYNLVASATDGPMRLISVVLGAPSDK 269

Query: 275 ERDQKALELITSFL 288
            R  ++ +L+T   
Sbjct: 270 VRFSESEKLLTWGF 283


>gi|213619044|ref|ZP_03372870.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 305

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 74/278 (26%), Positives = 139/278 (50%), Gaps = 8/278 (2%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPAS 79
            ++I  ++  M     L+   +S A +  A    + +++D    Q+     + + R PAS
Sbjct: 6   RLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +      
Sbjct: 66  LTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSR 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI  S ND   A  ++I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D
Sbjct: 126 GLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYD 185

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNI 252
            A+L   +    P++Y  +S +   +      N N LL  K  +IDG+KTG+T  +GFN+
Sbjct: 186 LAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNL 245

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           + S       ++AVVMG  +S+ R+++A +L+    + 
Sbjct: 246 IASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQN 283


>gi|256022304|ref|ZP_05436169.1| D-alanyl-D-alanine carboxypeptidase [Escherichia sp. 4_1_40B]
          Length = 388

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAESWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEAKKLLRWGQQNFT 283


>gi|293606885|ref|ZP_06689233.1| D-alanyl-D-alanine carboxypeptidase DacA [Achromobacter piechaudii
           ATCC 43553]
 gi|292814737|gb|EFF73870.1| D-alanyl-D-alanine carboxypeptidase DacA [Achromobacter piechaudii
           ATCC 43553]
          Length = 386

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 75/272 (27%), Positives = 142/272 (52%), Gaps = 11/272 (4%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPR-YPASLTKMM 84
           +L   +L  +  + S  ++   +P+ S+   +++D    Q+        R  PASLTK+M
Sbjct: 5   KLAASLLVATACLSSAMAQSMPQPELSAKAWLLLDETSGQVIASHAATTRIEPASLTKIM 64

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGILALITRSAND 142
           T Y++F+ L  K+L  N  + +S  A       SK++L+  +  T +  +  L+ +S ND
Sbjct: 65  TAYVVFDALSKKELSANQTVVISTRAWKVPAGSSKMFLEPGSKVTVDDLLRGLMIQSGND 124

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E +SGS + F   M++ A ++G+  T + +  GL D    +TA D ++L     
Sbjct: 125 AAIALAEAVSGSVEAFVARMNDTAARLGLHATHFASPHGLPDPGTYSTASDLSVLATRFI 184

Query: 203 KNFPQYYKYF-SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY--- 258
           +++PQ YK + S ++F +      N N+LL    ++DG+KTG+T ++G+ IV + R    
Sbjct: 185 RDYPQLYKTYDSAKQFTFNKITQPNRNRLLWLDPSVDGLKTGHTDSAGYCIVATARRPNG 244

Query: 259 -KDDPIVAVVMGMPTSQERDQKALELITSFLE 289
                ++ VV+G  + + R Q++ +L+    +
Sbjct: 245 SDQRRLITVVVGTASDKLRTQESRQLLEWGFQ 276


>gi|157161502|ref|YP_001458820.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli HS]
 gi|157067182|gb|ABV06437.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli HS]
          Length = 388

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 141/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPQIQAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T ++G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSSAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AV+MG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAVDGQRRLIAVIMGADSAKGREEEARKLLRWGQQNFT 283


>gi|74312552|ref|YP_310971.1| D-alanyl-D-alanine carboxypeptidase [Shigella sonnei Ss046]
 gi|73856029|gb|AAZ88736.1| penicillin binding protein 6b [Shigella sonnei Ss046]
          Length = 390

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 70/285 (24%), Positives = 140/285 (49%), Gaps = 14/285 (4%)

Query: 22  IYIQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEP 74
           + ++R + +   +   ++        I  + +       S +++D    Q+     + + 
Sbjct: 1   MLLKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQ 60

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTT 128
           R PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    + 
Sbjct: 61  RNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
                 LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q 
Sbjct: 121 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRN 247
           ++A D A+    +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  
Sbjct: 181 SSAYDLAVFSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSG 240

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +GFN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 AGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 285


>gi|30022162|ref|NP_833793.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
 gi|29897719|gb|AAP10994.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
          Length = 396

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 158/309 (51%), Gaps = 22/309 (7%)

Query: 24  IQRNIQ-LMGKILFLSIIMISMA-------------SELHAKPKYSSIVIDVNKNQMTGF 69
           ++R    L+  +L LS   +S A             +   A+   S+IVI+ +  ++   
Sbjct: 1   MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+ AA+   S+++L+     T 
Sbjct: 61  KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            + +  +   S ND S A  E I+GSE+ F  +M+ KAK +G++NT ++N +GL  K+  
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTG 243
           +TA D AI+   L K +P   KY       +R+   +   + N NKL+     +DG+KTG
Sbjct: 181 STANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 239

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
           +T  + + +  S       +++VVMG PTS+ER+ +  +L+     +   K   T R + 
Sbjct: 240 FTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYT-RGEK 298

Query: 304 LSSTSLKKS 312
           + +  + K 
Sbjct: 299 IKTVQVGKG 307


>gi|323977820|gb|EGB72906.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TW10509]
          Length = 388

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 139/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+ +A +L+    +  T
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREDEARKLLRWGQQNFT 283


>gi|218230756|ref|YP_002368880.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           B4264]
 gi|218158713|gb|ACK58705.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           B4264]
          Length = 396

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 158/309 (51%), Gaps = 22/309 (7%)

Query: 24  IQRNIQ-LMGKILFLSIIMISMA-------------SELHAKPKYSSIVIDVNKNQMTGF 69
           ++R    L+  +L LS   +S A             +   A+   S+IVI+ +  ++   
Sbjct: 1   MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+ AA+   S+++L+     T 
Sbjct: 61  KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            + +  +   S ND S A  E I+GSE+ F  +M+ KAK +G++NT ++N +GL  K+  
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTG 243
           +TA D AI+   L K +P   KY       +R+   +   + N NKL+     +DG+KTG
Sbjct: 181 STANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 239

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
           +T  + + +  S       +++VVMG PTS+ER+ +  +L+     +   K   T R + 
Sbjct: 240 FTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYT-RGEK 298

Query: 304 LSSTSLKKS 312
           + +  + K 
Sbjct: 299 IKTVQVGKG 307


>gi|330861526|emb|CBX71735.1| D-alanyl-D-alanine carboxypeptidase dacC [Yersinia enterocolitica
           W22703]
          Length = 428

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 77/278 (27%), Positives = 138/278 (49%), Gaps = 10/278 (3%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMA--SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           S +  + +     +L L++     A      A    + +++D N  ++      D+   P
Sbjct: 37  SPFKLKKLTFSAGLLLLALPYAHAADSPAAPAIDAKAYVLMDYNSGKVLAEGNSDQRLDP 96

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQG 131
           ASLTK+M+ Y+I + +++ K+H +  + V K A        +  S ++LK          
Sbjct: 97  ASLTKIMSSYVIGQAIKAGKVHPDDLVTVGKDAWATGNPALRGSSLMFLKPGDQVKLSDL 156

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
              ++ +S ND S A  ++I+GS+  F  LM+N AK +G+ NT +    GL    Q +TA
Sbjct: 157 NKGIVIQSGNDASIALADYIAGSQDSFVGLMNNYAKALGLNNTNFMTVHGLDAPGQYSTA 216

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGF 250
            D A+LG  L ++ P  Y     ++F +      N N+LL   + N+DG+KTG+T  +G 
Sbjct: 217 HDMAVLGQALIRDVPDEYALHKEKEFTFNKIRQINRNRLLWSTNLNVDGMKTGFTAGAGH 276

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           N+V S       +++VV+G P+ + R  ++ +L+T   
Sbjct: 277 NLVASATDGPMRLISVVLGAPSDRVRFSESEKLLTWGF 314


>gi|188534483|ref|YP_001908280.1| D-alanyl-D-alanine carboxypeptidase fraction A [Erwinia
           tasmaniensis Et1/99]
 gi|188029525|emb|CAO97402.1| Penicillin-binding protein 5 [Erwinia tasmaniensis Et1/99]
          Length = 404

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 82/276 (29%), Positives = 147/276 (53%), Gaps = 18/276 (6%)

Query: 31  MGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQ-DEPRYPASL 80
           +G ++ LS+ +++ A +++ K            + ++ID N  ++   K  D  R PASL
Sbjct: 15  LGSLIALSLNVVAYADDVNIKTMIPGVPEIDAEAYVLIDYNSGKVLAEKNADARRDPASL 74

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILA 134
           TKMMT Y+I + +++ K+H +  + V K A        +  S ++LK        Q    
Sbjct: 75  TKMMTSYVIGQAIKAGKIHQDDIVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVSQLTRG 134

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           ++ +S ND   A  ++++GS+  F  LM+N  K +G+QNT ++   GL  + Q ++ARD 
Sbjct: 135 IVLQSGNDACVAMADYVAGSQDTFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYSSARDM 194

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIV 253
           A++G  L ++ P  Y  +  ++F + N    N N LL     N+DGIKTG+T ++G+N+V
Sbjct: 195 ALIGRALIRDVPDEYAVYHEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTESAGYNLV 254

Query: 254 TSLRYK-DDPIVAVVMGMPTSQERDQKALELITSFL 288
            S        +++ VMG  T + R+ ++ +L+T   
Sbjct: 255 ASATEGQQMRLISAVMGGHTYKGRETESKKLLTWGF 290


>gi|126175479|ref|YP_001051628.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS155]
 gi|125998684|gb|ABN62759.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Shewanella baltica OS155]
          Length = 391

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 78/275 (28%), Positives = 145/275 (52%), Gaps = 9/275 (3%)

Query: 23  YIQRNIQLMGKILFLSIIMISM----ASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYP 77
           +++  I+ +  I   S+ + +       +  +    + +++D N  Q+       E   P
Sbjct: 4   FVKSPIKTLLLISSASLPVYAAQPIITPDAPSVAAKAFVLMDYNSGQIIAESNAYESLNP 63

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           ASLTKMMT Y+I + +++  + ++  + +SK A ++N    SK++++  T          
Sbjct: 64  ASLTKMMTSYVIGQEIKAGNVSVDDDVTISKNAWSKNFSDSSKMFIEVGTTVKVGDLNRG 123

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +I +S ND   A  E I+G+E  F  +M++ AK++GM+++ ++NA GL  +N  +TA D 
Sbjct: 124 IIIQSGNDACVAMAEHIAGTEGAFVDMMNSWAKQLGMRDSYFENAHGLDAENHKSTAYDM 183

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIV 253
           A+LG  L ++ P  Y  +S + + +      N N LL     N+DGIKTG+T  +G+N+V
Sbjct: 184 ALLGAALIRDEPDEYHIYSEKFYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGYNLV 243

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            S       +++VVMG  +   R  ++ +L+T   
Sbjct: 244 ASATKDGMRLISVVMGTQSESARKAESKKLLTYGF 278


>gi|309786587|ref|ZP_07681209.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae
           1617]
 gi|308925554|gb|EFP71039.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae
           1617]
          Length = 364

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 74/244 (30%), Positives = 127/244 (52%), Gaps = 8/244 (3%)

Query: 53  KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + I++D    ++      DE   PASLTK+MT Y++ + L++ K+ L   + V K A 
Sbjct: 3   ARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAW 62

Query: 112 ------TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
                  +  S ++LK     +       +I +S ND   A  ++++GS++ F  LM+  
Sbjct: 63  VTGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGY 122

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
           AKK+G+ NT ++   GL    Q +TARD A+LG  L  + P+ Y     ++F +      
Sbjct: 123 AKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQP 182

Query: 226 NHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N+LL   + N+DG+KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L+
Sbjct: 183 NRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLL 242

Query: 285 TSFL 288
               
Sbjct: 243 AWGF 246


>gi|163941818|ref|YP_001646702.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
 gi|163864015|gb|ABY45074.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
          Length = 396

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 159/309 (51%), Gaps = 22/309 (7%)

Query: 24  IQRNIQ-LMGKILFLSIIMISMA-------------SELHAKPKYSSIVIDVNKNQMTGF 69
           ++R    L+  +L LS   +S A             +   A+   S+IVI+ +  ++   
Sbjct: 1   MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           K  +E   PAS+TK+MT+ +I E ++  KL LN ++  S+ AA+   S+++L+     T 
Sbjct: 61  KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLNDKVRASEHAASMGGSQIFLEPGEEMTV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            + +  +   S ND S A  E I+GSE+ F  +M+ KAK +G++NT ++N +GL  K+  
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTG 243
           +TA D AI+   L K +P   KY       +R+   +   + N NKL+     +DG+KTG
Sbjct: 181 STANDMAIMAKELMK-YPLIRKYTGKYEDYLRENTDKKFWLVNTNKLVRFYPGVDGVKTG 239

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
           +T  + + +  S       +++VVMG PTS+ER+ +  +L+     +   K   T R + 
Sbjct: 240 FTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYT-RGEK 298

Query: 304 LSSTSLKKS 312
           + +  + K 
Sbjct: 299 IKTVQVGKG 307


>gi|307138677|ref|ZP_07498033.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H736]
 gi|331642633|ref|ZP_08343768.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli H736]
 gi|331039431|gb|EGI11651.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli H736]
          Length = 388

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEAKKLLRWGQQNFT 283


>gi|158423216|ref|YP_001524508.1| putative D-alanyl-D-alanine carboxypeptidase precursor
           [Azorhizobium caulinodans ORS 571]
 gi|158330105|dbj|BAF87590.1| putative D-alanyl-D-alanine carboxypeptidase precursor
           [Azorhizobium caulinodans ORS 571]
          Length = 629

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 111/238 (46%), Positives = 162/238 (68%), Gaps = 1/238 (0%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++IV+D N  ++   +  D  R+PASLTK+MTLY++FE LQ+ +L L++ +PVS  AA+Q
Sbjct: 123 AAIVVDGNTGKVLYEENADSLRHPASLTKIMTLYMLFEQLQAGRLKLDSDLPVSAHAASQ 182

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           +P+KL L+  +    E  I A++TRSAND +   GE I G+E  FA +M+ KA+ +GM N
Sbjct: 183 SPTKLNLRPGSTIEVEDAIKAVVTRSANDAAVVIGEAIGGTESNFAEMMTRKARALGMSN 242

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           T ++NASGL +  Q+TTARD ++LG  ++  FP+ Y+YFS R F YR   I NHN+L+ +
Sbjct: 243 TTFRNASGLPNPGQVTTARDLSVLGRAIQDRFPREYRYFSTRAFVYRGETIGNHNRLMLR 302

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
           M  +DGIKTGYT  SGFN+VTSL   D  +V VV+G  ++  RDQ+   ++TS L + 
Sbjct: 303 MEGVDGIKTGYTNASGFNLVTSLHRDDRFLVGVVLGGSSASSRDQRMASILTSNLPRA 360


>gi|308186205|ref|YP_003930336.1| D-alanyl-D-alanine carboxypeptidase [Pantoea vagans C9-1]
 gi|308056715|gb|ADO08887.1| D-alanyl-D-alanine carboxypeptidase [Pantoea vagans C9-1]
          Length = 400

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 74/277 (26%), Positives = 136/277 (49%), Gaps = 11/277 (3%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMT-GFKQDEPRYPA 78
           +  R   L    L +   +   A +  A P     + I+ID    ++      D+   PA
Sbjct: 6   FSSRLRHLAATSLLILAPISVFAEQAPAAPGIDAKAWILIDYASGKVLTESSADQRLDPA 65

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGI 132
           SLTKMMT Y++ + +++ K+  +  + V + A        +  S ++LK        +  
Sbjct: 66  SLTKMMTSYVVGQAIKAGKIKPDDLVTVGQDAWATGNPKLRGSSLMFLKPGDRIPVHELN 125

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             ++ +S ND   A  ++++GS+  F  LM+N  K +G+QNT +    GL  + Q +TAR
Sbjct: 126 KGIVIQSGNDACIALADYVAGSQDSFIGLMNNYVKALGLQNTHFMTVHGLDAEGQYSTAR 185

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFN 251
           D A++   L ++ P+ Y     ++F +      N N+LL   +  +DG+KTG+T  +G N
Sbjct: 186 DMALIAQALIRDVPEEYALNKEKEFTFNKIRQINRNRLLWSTNLKVDGVKTGHTSGAGNN 245

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +V S    D  +++VV+G  +   R +++ +L+T   
Sbjct: 246 LVASATEGDMRLISVVLGTASDAIRFRESEKLLTWGF 282


>gi|331653434|ref|ZP_08354435.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli M718]
 gi|331048283|gb|EGI20359.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli M718]
          Length = 390

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 70/285 (24%), Positives = 141/285 (49%), Gaps = 14/285 (4%)

Query: 22  IYIQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEP 74
           + ++R + +   +   ++        I  + +       S +++D    Q+     + + 
Sbjct: 1   MLLKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQ 60

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTT 128
           R PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    + 
Sbjct: 61  RNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
                 LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q 
Sbjct: 121 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRN 247
           ++A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  
Sbjct: 181 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSG 240

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +GFN++ S       +++VVMG  +++ R+++A +L+    +  T
Sbjct: 241 AGFNLIASAVDGQRRLISVVMGADSAKGREEEAKKLLRWGQQNFT 285


>gi|206971113|ref|ZP_03232064.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           AH1134]
 gi|228960342|ref|ZP_04121995.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229129356|ref|ZP_04258327.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus BDRD-Cer4]
 gi|229152278|ref|ZP_04280471.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus m1550]
 gi|296504570|ref|YP_003666270.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
 gi|206733885|gb|EDZ51056.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           AH1134]
 gi|228631240|gb|EEK87876.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus m1550]
 gi|228653961|gb|EEL09828.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus BDRD-Cer4]
 gi|228799366|gb|EEM46330.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|296325622|gb|ADH08550.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
          Length = 396

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 158/309 (51%), Gaps = 22/309 (7%)

Query: 24  IQRNIQ-LMGKILFLSIIMISMA-------------SELHAKPKYSSIVIDVNKNQMTGF 69
           ++R    L+  +L LS   +S A             +   A+   S+IVI+ +  ++   
Sbjct: 1   MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+ AA+   S+++L+     T 
Sbjct: 61  KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            + +  +   S ND S A  E I+GSE+ F  +M+ KAK +G++NT ++N +GL  K+  
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTG 243
           +TA D AI+   L K +P   KY       +R+   +   + N NKL+     +DG+KTG
Sbjct: 181 STANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 239

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
           +T  + + +  S       +++VVMG PTS+ER+ +  +L+     +   K   T R + 
Sbjct: 240 FTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYT-RGEK 298

Query: 304 LSSTSLKKS 312
           + +  + K 
Sbjct: 299 IKTVQVGKG 307


>gi|228954361|ref|ZP_04116387.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228805293|gb|EEM51886.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 396

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 158/309 (51%), Gaps = 22/309 (7%)

Query: 24  IQRNIQ-LMGKILFLSIIMISMA-------------SELHAKPKYSSIVIDVNKNQMTGF 69
           ++R    L+  +L LS   +S A             +   A+   S+IVI+ +  ++   
Sbjct: 1   MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+ AA+   S+++L+     T 
Sbjct: 61  KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            + +  +   S ND S A  E I+GSE+ F  +M+ KAK +G++NT ++N +GL  K+  
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTG 243
           +TA D AI+   L K +P   KY       +R+   +   + N NKL+     +DG+KTG
Sbjct: 181 STANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 239

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
           +T  + + +  S       I++VVMG PTS+ER+ +  +L+     +   K   T R + 
Sbjct: 240 FTTEAKYCLTASAEKNGMRIISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYT-RGEK 298

Query: 304 LSSTSLKKS 312
           + +  + K 
Sbjct: 299 IKTVQVGKG 307


>gi|253773059|ref|YP_003035890.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161999|ref|YP_003045107.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli B str.
           REL606]
 gi|297519533|ref|ZP_06937919.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli OP50]
 gi|242377656|emb|CAQ32416.1| DD-carboxypeptidase, penicillin-binding protein 6b [Escherichia
           coli BL21(DE3)]
 gi|253324103|gb|ACT28705.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973900|gb|ACT39571.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli B str. REL606]
 gi|253978094|gb|ACT43764.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli BL21(DE3)]
          Length = 388

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEAKKLLRWGQQNFT 283


>gi|228941227|ref|ZP_04103780.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228974159|ref|ZP_04134729.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228980751|ref|ZP_04141056.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis Bt407]
 gi|228778920|gb|EEM27182.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis Bt407]
 gi|228785499|gb|EEM33508.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228818386|gb|EEM64458.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|326941850|gb|AEA17746.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 396

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 158/309 (51%), Gaps = 22/309 (7%)

Query: 24  IQRNIQ-LMGKILFLSIIMISMA-------------SELHAKPKYSSIVIDVNKNQMTGF 69
           ++R    L+  +L LS   +S A             +   A+   S+IVI+ +  ++   
Sbjct: 1   MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+ AA+   S+++L+     T 
Sbjct: 61  KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            + +  +   S ND S A  E I+GSE+ F  +M+ KAK +G++NT ++N +GL  K+  
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTG 243
           +TA D AI+   L K +P   KY       +R+   +   + N NKL+     +DG+KTG
Sbjct: 181 STANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 239

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
           +T  + + +  S       +++VVMG PTS+ER+ +  +L+     +   K   T R + 
Sbjct: 240 FTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYT-RGEK 298

Query: 304 LSSTSLKKS 312
           + +  + K 
Sbjct: 299 IKTVQVGKG 307


>gi|329893664|ref|ZP_08269798.1| D-alanyl-D-alanine carboxypeptidase [gamma proteobacterium
           IMCC3088]
 gi|328923591|gb|EGG30903.1| D-alanyl-D-alanine carboxypeptidase [gamma proteobacterium
           IMCC3088]
          Length = 389

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 144/271 (53%), Gaps = 9/271 (3%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGF-KQDEPRYPASLTKMM 84
           +L+     L   +   A+ + A P+ ++    +ID     +      +E   PASLTK+M
Sbjct: 3   KLLATAAALGFSVSVSAAIIPAPPEVAARAHYLIDATTGYVIAESNANEQLPPASLTKLM 62

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRS 139
           T Y++   ++  ++  + ++ +S+ A  QNP     S ++L+     +       ++  S
Sbjct: 63  TSYVLSYEIERGRVAFDDKVLISENAWAQNPIFKGSSLMWLEPGMEVSISDLEKGIVISS 122

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND + A  E ++G+E  FA +M+  A+++GM ++ ++N+ GL   N +TTA D A+L  
Sbjct: 123 GNDATVAIAEHLAGNETAFADMMNTHAQRLGMNDSYFENSHGLPSPNHLTTAHDLALLAK 182

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            + ++FP +Y+ ++ R + + N    N N LL +  ++DG+KTGYT  +G+ +V+S +  
Sbjct: 183 AIIQDFPTHYQIYAERDYTFNNIKQYNRNTLLGEDPSVDGLKTGYTSEAGYGLVSSAKRG 242

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           D  +++VV+G  +++ R  +   L+      
Sbjct: 243 DMRLISVVLGTSSAKTRASETRSLLNYGFRY 273


>gi|167901088|ref|ZP_02488293.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 371

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 154/310 (49%), Gaps = 21/310 (6%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  A         S +++D + NQ+      DE   PASLTK+MT Y++FE L +KK+ +
Sbjct: 3   VPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 62

Query: 101 NTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
              +  S+      ++ S+++++     +    +  +I +S ND + A  E + GSE +F
Sbjct: 63  EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 122

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+ +A+++GM+NT + + +G+ D N  TTA D A L   L +++P YY  FS+++F 
Sbjct: 123 VNMMNAEAQRLGMKNTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFT 182

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMP 271
           Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +            +V V+MG  
Sbjct: 183 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGET 242

Query: 272 TSQERDQKALELI----TSFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKKLKR 320
              +R Q +++++    T+F   +  K  Q          K N     +KK   I   + 
Sbjct: 243 KESDRVQDSMKMLNYGYTAFDSVRLYKAGQPIGTPRVYKGKSNNVQVGVKKDQFITVPRG 302

Query: 321 TYSQFKKIDA 330
              + K   A
Sbjct: 303 LADKVKPEVA 312


>gi|114046558|ref|YP_737108.1| penicillin-binding protein 6 [Shewanella sp. MR-7]
 gi|113888000|gb|ABI42051.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Shewanella sp. MR-7]
          Length = 391

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 75/275 (27%), Positives = 145/275 (52%), Gaps = 9/275 (3%)

Query: 23  YIQRNIQLMGKILFLSIIMISM----ASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYP 77
           +++  I+ +  I  +S+ + +       +       + +++D    Q+   +   E   P
Sbjct: 4   FVKSPIKTLLLISSVSLPVYAAQPIVTPDAPTVAAKAYVLMDYYSGQIIAEENAYESLNP 63

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           ASLTKMMT Y+I + +++  +  +  + +SK A ++N    SK++++             
Sbjct: 64  ASLTKMMTSYVIGQEIKAGNVSPDDDVTISKNAWSKNFSDSSKMFIEVGKTVKVSDLNRG 123

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +I +S ND   A  E I+G+E  F  +M++ AK++GM+++ ++N+ GL  +N  +TA D 
Sbjct: 124 IIIQSGNDACVAMAEHIAGTEGAFVDMMNSWAKQLGMRDSYFENSHGLDAENHKSTAYDM 183

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIV 253
           A+LG  L ++ P+ Y+ +S + + +      N N LL     N+DGIKTG+T  +G+N+V
Sbjct: 184 ALLGAALIRDVPEEYRVYSEKYYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGYNLV 243

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            S       +++VVMG  +   R  ++ +L+T   
Sbjct: 244 ASATKDGMRLISVVMGTQSEAARKAESKKLLTYGF 278


>gi|218513170|ref|ZP_03510010.1| probable serine-type D-Ala-D-Ala carboxypeptidase protein
           [Rhizobium etli 8C-3]
          Length = 325

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 118/277 (42%), Positives = 174/277 (62%), Gaps = 3/277 (1%)

Query: 35  LFLSIIMISM--ASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFE 91
           + ++++++    A    A PKY+ IV+D     +   +  +   YPASLTKMMTLY+ FE
Sbjct: 1   MAVTVVLVDSVNAEAEAANPKYAGIVVDAKTGNVLYSENADRLQYPASLTKMMTLYMTFE 60

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            L+  ++ L+T +P S  AA Q P+KL ++     T EQGIL L+T SAND +TA GE +
Sbjct: 61  ALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDAATALGEML 120

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            GSE +FA +M+ KA  +GM  T Y+NA+GL +  Q+TTARDQA LGI LR++FPQYY Y
Sbjct: 121 GGSEDRFAQMMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQHFPQYYGY 180

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           FS R F++  R I +HN+L+  +  +DGIKTGYTR +GFN+V+S++     IV+VV+G  
Sbjct: 181 FSTRAFKFGTRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSIVSVVLGGT 240

Query: 272 TSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
           +   RD +   LI ++L K + +   +      +   
Sbjct: 241 SGPARDAQMRNLIATYLPKASSRGGSSQLIAQAAPAP 277


>gi|301154770|emb|CBW14233.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Haemophilus parainfluenzae T3T1]
          Length = 395

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 87/300 (29%), Positives = 156/300 (52%), Gaps = 16/300 (5%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELH------AKPKYSS---IVIDVNKNQMTGF-KQDE 73
           ++++ +L   +LF  ++  S  +         A P+ ++   +++D N   +      D+
Sbjct: 2   LKQSAKLKKIVLFSGLMAASTFAAAEDLQYGIAVPEVNAQTYVLMDYNSGAVLASLNPDQ 61

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQ 130
            +YPASLTKMMT Y++   L+  K+H    + + ++A  +N    SK++L      +   
Sbjct: 62  RQYPASLTKMMTSYVVGAALKQGKIHNEDMVTIGESAWGRNFPDSSKMFLNLNQQVSVGD 121

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               +I  S ND   A  E ISG+   F   M+   ++ G++NT +    GL D NQ +T
Sbjct: 122 LNKGIIIVSGNDACVAVAEHISGTVANFVDTMNKYVQQFGLKNTNFTTPHGLDDPNQYST 181

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           ARD AI+G  + ++ P+ YK ++ + F +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 182 ARDMAIIGAHIIRDLPEEYKIYAEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAG 241

Query: 250 FNIVTSLRY-KDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHRKDNLSST 307
           +N+V S     +  +++VVMG+PT + R+ ++ +L+       +TLK  + + K +  S 
Sbjct: 242 YNLVASATSPNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETLKAHKANEKISTQSV 301


>gi|254476532|ref|ZP_05089918.1| D-alanyl-D-alanine carboxypeptidase protein [Ruegeria sp. R11]
 gi|214030775|gb|EEB71610.1| D-alanyl-D-alanine carboxypeptidase protein [Ruegeria sp. R11]
          Length = 538

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 102/264 (38%), Positives = 155/264 (58%), Gaps = 4/264 (1%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           ++G ++FL++IM +    + A P Y+++VID    ++   +  D   +PASLTKMMTLYI
Sbjct: 26  VLGLVVFLTMIM-AAPPNVGAAP-YAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYI 83

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            FE +++ ++ L+T++ +S+ AA + PSKL LK          I A   +SAND +TA G
Sbjct: 84  AFEAVRNGEITLDTKVKISRNAAAEPPSKLGLKAGQRIAFRYLIRAAAIKSANDAATAIG 143

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E +SGSE  FA  M+  AK +GM  T +KNA GL +   ++TARD   LG  +  ++P+Y
Sbjct: 144 ETLSGSEAAFARRMTRTAKALGMSRTTFKNAHGLTENGHMSTARDMTTLGRHILYDYPEY 203

Query: 209 YKYFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           Y  FS +      R + N N +LL      DGIKTGYTR +GFN+V S +  ++ ++A V
Sbjct: 204 YNLFSRKSADAGVRTVPNTNRRLLAAYRGADGIKTGYTRAAGFNLVASAQRGNERVIATV 263

Query: 268 MGMPTSQERDQKALELITSFLEKK 291
            G  +S  R+ K  EL+     + 
Sbjct: 264 FGGKSSTSRNAKVAELLDLGFRRA 287


>gi|229086646|ref|ZP_04218815.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock3-44]
 gi|228696728|gb|EEL49544.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock3-44]
          Length = 386

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 90/307 (29%), Positives = 155/307 (50%), Gaps = 28/307 (9%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 31  AEQASSAIVIEQDTGKVLFEKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLEDKVRASE 90

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 91  HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 150

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRI 223
           +G++NT ++N +GL  K+  +TA D +I+   L K +P   KY       +R+   +   
Sbjct: 151 LGLKNTHFQNPTGLPAKDHYSTAYDMSIMAKELMK-YPLIRKYTGKYEDYLRENTEKKFW 209

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +L
Sbjct: 210 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKL 269

Query: 284 ITSFLEKKTLKH--------------------QQTHRKDNLSSTSLKKSLMIKKLKRTYS 323
           +     + T K                           DN+ S  +KK   + K+K+   
Sbjct: 270 LDYAFGQYTTKKMYKRGEKIQTVKVGKGKKEKVDLVASDNV-SLLMKKGENMDKVKQEII 328

Query: 324 QFKKIDA 330
             KK+ A
Sbjct: 329 TEKKVKA 335


>gi|237732061|ref|ZP_04562542.1| DacD [Citrobacter sp. 30_2]
 gi|226907600|gb|EEH93518.1| DacD [Citrobacter sp. 30_2]
          Length = 421

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 146/298 (48%), Gaps = 14/298 (4%)

Query: 7   QSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSII------MISMASELHAKPKYSSIVID 60
           ++S K+T ++     + ++R + +   +  +S        + S A +  A    + +++D
Sbjct: 17  RTSVKRTAISPFPEDMLLKRRLFIAASLFAMSFSPAYATDVASFAPQPPAINAGAWVLMD 76

Query: 61  VNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------ 113
               Q+     + + R PASLTK+MT Y++   + SK++     + V + A  +      
Sbjct: 77  YTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSKRISPTDIVTVGRDAWAKDNPVFV 136

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S ++LKE    +       LI  S ND   A  ++I+G + +F  +M+N  +K+ +++
Sbjct: 137 GSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNNYVQKLNLRD 196

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN- 232
           T ++   GL    Q ++A D A+L   +    P +Y  +S +   +      N N LL  
Sbjct: 197 THFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPDFYHMYSEKSLTWNGITQQNRNGLLWD 256

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R+ +A +L+    + 
Sbjct: 257 KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAESAKGREDQARKLLQWGQQN 314


>gi|24372747|ref|NP_716789.1| D-alanyl-D-alanine carboxypeptidase [Shewanella oneidensis MR-1]
 gi|24346818|gb|AAN54234.1|AE015560_7 D-alanyl-D-alanine carboxypeptidase [Shewanella oneidensis MR-1]
          Length = 390

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 75/275 (27%), Positives = 145/275 (52%), Gaps = 9/275 (3%)

Query: 23  YIQRNIQLMGKILFLSIIMISM----ASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYP 77
           +++  I+ +  I  +S+ + +       +       + +++D    Q+   +   E   P
Sbjct: 3   FVKSPIKTLLLISSVSLPVYAAQPIVTPDAPTVAAKAYVLMDYYSGQIIAEENAYESLNP 62

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           ASLTKMMT Y+I + +++  +  +  + +SK A ++N    SK++++             
Sbjct: 63  ASLTKMMTSYVIGQEIKAGNVSPDDDVTISKNAWSKNFSDSSKMFIEVGKTVKVSDLNRG 122

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +I +S ND   A  E I+G+E  F  +M++ +K++GM+++ ++N+ GL  +N  TTA D 
Sbjct: 123 IIIQSGNDACVAMAEHIAGTEGAFVDMMNSWSKQLGMRDSYFENSHGLDSENHKTTAYDM 182

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIV 253
           A+LG  L ++ P+ Y+ +S + + +      N N LL     N+DGIKTG+T  +G+N+V
Sbjct: 183 ALLGAALIRDVPEEYRIYSEKYYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGYNLV 242

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            S       +++VVMG  +   R  ++ +L+T   
Sbjct: 243 ASATKDGMRLISVVMGTQSEAARKAESKKLLTYGF 277


>gi|320668144|gb|EFX35013.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 388

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 72/283 (25%), Positives = 141/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQM-TGFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+ T   + + R 
Sbjct: 1   MKRRLIIAASLFIFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQIFTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283


>gi|113969331|ref|YP_733124.1| penicillin-binding protein 6 [Shewanella sp. MR-4]
 gi|117919440|ref|YP_868632.1| penicillin-binding protein 6 [Shewanella sp. ANA-3]
 gi|113884015|gb|ABI38067.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Shewanella sp. MR-4]
 gi|117611772|gb|ABK47226.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Shewanella sp. ANA-3]
          Length = 391

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 75/275 (27%), Positives = 145/275 (52%), Gaps = 9/275 (3%)

Query: 23  YIQRNIQLMGKILFLSIIMISM----ASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYP 77
           +++  I+ +  I  +S+ + +       +       + +++D    Q+   +   E   P
Sbjct: 4   FVKSPIKTLLLISSVSLPVYAAQPIVTPDAPTVAAKAYVLMDYYSGQIIAEENAYESLNP 63

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           ASLTKMMT Y+I + +++  +  +  + +SK A ++N    SK++++             
Sbjct: 64  ASLTKMMTSYVIGQEIKAGNVSPDDDVTISKNAWSKNFSDSSKMFIEVGKTVKVSDLNRG 123

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +I +S ND   A  E I+G+E  F  +M++ AK++GM+++ ++N+ GL  +N  +TA D 
Sbjct: 124 IIIQSGNDACVAMAEHIAGTEGAFVDMMNSWAKQLGMRDSYFENSHGLDSENHKSTAYDM 183

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIV 253
           A+LG  L ++ P+ Y+ +S + + +      N N LL     N+DGIKTG+T  +G+N+V
Sbjct: 184 ALLGAALIRDVPEEYRVYSEKYYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGYNLV 243

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            S       +++VVMG  +   R  ++ +L+T   
Sbjct: 244 ASATKDGMRLISVVMGTQSEAARKAESKKLLTYGF 278


>gi|123441794|ref|YP_001005778.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088755|emb|CAL11560.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 405

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 76/278 (27%), Positives = 137/278 (49%), Gaps = 10/278 (3%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMA--SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
             +  + +     +L L++     A      A    + +++D N  ++      D+   P
Sbjct: 14  PPFKLKKLTFSAGLLLLALPYAHAADSPAAPAIDAKAYVLMDYNSGKVLAEGNSDQRLDP 73

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQG 131
           ASLTK+M+ Y+I + +++ K+H +  + V K A        +  S ++LK          
Sbjct: 74  ASLTKIMSSYVIGQAIKAGKVHPDDLVTVGKDAWATGNSALRGSSLMFLKPGDQVKLSDL 133

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
              ++ +S ND S A  ++I+GS+  F  LM+N AK +G+ NT +    GL    Q +TA
Sbjct: 134 NKGIVIQSGNDASIALADYIAGSQDSFVGLMNNYAKALGLNNTHFMTVHGLDAPGQYSTA 193

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGF 250
            D A+LG  L ++ P  Y     ++F +      N N+LL   + N+DG+KTG+T  +G 
Sbjct: 194 HDMAVLGQALIRDVPDEYALHKEKEFTFNKIRQINRNRLLWSTNLNVDGMKTGFTAGAGH 253

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           N+V S       +++VV+G P+ + R  ++ +L+T   
Sbjct: 254 NLVASATDGPMRLISVVLGAPSDRVRFSESEKLLTWGF 291


>gi|28897493|ref|NP_797098.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260876429|ref|ZP_05888784.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus AN-5034]
 gi|28805705|dbj|BAC58982.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308091621|gb|EFO41316.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus AN-5034]
 gi|328472498|gb|EGF43361.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus 10329]
          Length = 392

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 83/258 (32%), Positives = 137/258 (53%), Gaps = 8/258 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           F S +++  A ++ AK     +++D +  ++   K+ +    PASLTKMMT Y+I + L 
Sbjct: 26  FASPVVVPDAPQIAAK---GYVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELA 82

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              +  +  + +SK A  +N    SK++++  T          +I +S ND   A  E I
Sbjct: 83  RGNISEDDDVTISKNAWAKNFPDSSKMFIEVGTTVKVRDLNRGIIIQSGNDACVAMAEHI 142

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  F  LM+  A  +GM+N+ + N  GL +    +T  D A+LG  L ++ P  Y+ 
Sbjct: 143 AGSEDAFVDLMNAWANTLGMKNSHFANVHGLDNSELYSTPYDMALLGKALIRDVPDEYRV 202

Query: 212 FSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL  K  N+DGIKTG+T N+G+++V+S       +VAVVMG 
Sbjct: 203 YSEKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGQMRLVAVVMGT 262

Query: 271 PTSQERDQKALELITSFL 288
             +  R  ++ +L++   
Sbjct: 263 KDANARKSESKKLLSYGF 280


>gi|91776847|ref|YP_546603.1| penicillin-binding protein 6 [Methylobacillus flagellatus KT]
 gi|91710834|gb|ABE50762.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Methylobacillus flagellatus KT]
          Length = 385

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 97/326 (29%), Positives = 173/326 (53%), Gaps = 17/326 (5%)

Query: 18  PYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPK---YSSIVIDVNKNQMTGFKQ-DE 73
            Y SIY +    +     F + ++++ A+++   P     S  + D N  ++   +  + 
Sbjct: 2   SYLSIY-KPVTIIAVAAAFTANMLMAHAADIPQPPTLAVKSYQLYDFNSERVIAEQDGNS 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
              PASLTK+MT Y+ F+ +++  L L   +PVS  A     SK++++     T ++ + 
Sbjct: 61  RVEPASLTKIMTAYLAFKAIKNGHLTLTQTLPVSVKAWKVEGSKMFIEPNKPVTVDELLH 120

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND S A  E I+GSE+ FA LM+ +A ++GM+ T Y NA+GL D    TTA D
Sbjct: 121 GMIIQSGNDASIALAEGIAGSEEGFAELMNKEAARLGMKGTHYVNATGLPDPQHYTTAHD 180

Query: 194 QAILGILLRKNFPQYYK-YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
            A+L   L ++FP +YK  +S++++ Y      N N+LL     +DG+KTG+T+++G+ +
Sbjct: 181 LALLAAALIRDFPDHYKRLYSMKEYTYNKISQPNRNRLLWLDPYVDGMKTGHTKSAGYCL 240

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQ--------THRK 301
           VTS +  D  +++VV+G P+   R  ++ +L+     F E K +  +             
Sbjct: 241 VTSAKRGDTRMISVVLGAPSDAARATESQKLLNYGFQFYESKLVYKRGAEVSSLKVWKGA 300

Query: 302 DNLSSTSLKKSLMIKKLKRTYSQFKK 327
           +N    ++ K++ I   K  Y++ K 
Sbjct: 301 ENSVVATVAKNVSITLPKGEYARVKA 326


>gi|171320084|ref|ZP_02909152.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria
           MEX-5]
 gi|171094681|gb|EDT39727.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria
           MEX-5]
          Length = 437

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 87/313 (27%), Positives = 154/313 (49%), Gaps = 21/313 (6%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
            +  A         S +++D   N +      DE   PASLTK+MT Y++FE L  KK+ 
Sbjct: 69  FMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKIS 128

Query: 100 LNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           +   +  S+      ++ S+++++     +    +  +I +S ND + A  E + GSE +
Sbjct: 129 MEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQ 188

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F  LM+ +A+++GM+ T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F
Sbjct: 189 FVTLMNAEAQRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEF 248

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY------KDDPIVAVVMGMP 271
           +Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +           +V+V+MG P
Sbjct: 249 KYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEP 308

Query: 272 TSQERDQKALELIT----SFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKKLKR 320
              ER Q +++++     +F   +  K  Q          K+N     +K    +   + 
Sbjct: 309 KEGERTQDSMKMLNYGYSAFDAVRLFKGGQAMSTPRVYKGKENTVQVGVKSDQWVTVPRG 368

Query: 321 TYSQFKK-IDAKA 332
              + K  +D  A
Sbjct: 369 LGDKVKPEVDVNA 381


>gi|227821811|ref|YP_002825781.1| penicillin-binding protein [Sinorhizobium fredii NGR234]
 gi|227340810|gb|ACP25028.1| penicillin-binding protein [Sinorhizobium fredii NGR234]
          Length = 498

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 121/270 (44%), Positives = 178/270 (65%), Gaps = 2/270 (0%)

Query: 29  QLMGKILFLSIIM-ISMASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTL 86
           + +G+++   ++  +  ++   A  KY+ IV+D    ++      D+ RYPASLTKMMTL
Sbjct: 19  KAVGRVVLAGVVAGLVYSAPALANSKYAGIVVDAKTGKVLYGEDADQLRYPASLTKMMTL 78

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y+ FE L++ ++  +T +P SK AA + PSKL ++     T EQ +L+L+TRSAND +TA
Sbjct: 79  YLTFEALEAGRISKSTPVPFSKKAAAEPPSKLGVRAGKAITVEQAVLSLVTRSANDAATA 138

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
            GE + GSE++FA +M+NKA+ +GM  T Y+NA+GL +  Q TTARDQA LG+ LR++FP
Sbjct: 139 LGELLGGSEQRFARMMTNKARALGMTRTTYRNANGLPNTEQKTTARDQARLGLALRQHFP 198

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           QYY YFS R FR+  + I NHN+LL  +  +DGIKTGYTR SGFN+VTS +     IVAV
Sbjct: 199 QYYDYFSTRSFRFGKQTIGNHNRLLGNVRGVDGIKTGYTRASGFNLVTSAQLDGRSIVAV 258

Query: 267 VMGMPTSQERDQKALELITSFLEKKTLKHQ 296
           VMG  +   RD +  +L+  ++   + +  
Sbjct: 259 VMGGTSGGARDAQMRKLVAKYMPAASRRGN 288


>gi|300722312|ref|YP_003711597.1| D-alanyl-D-alanine carboxypeptidase [Xenorhabdus nematophila ATCC
           19061]
 gi|297628814|emb|CBJ89392.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Xenorhabdus nematophila ATCC 19061]
          Length = 402

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 83/274 (30%), Positives = 138/274 (50%), Gaps = 16/274 (5%)

Query: 31  MGKILFLSIIMIS--------MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLT 81
           +G  L  S+   +        M   +      + I+ID N  ++   K  D  R PASLT
Sbjct: 15  LGIALAASVSAFANTDDNFKTMIPGVPELDSEAYILIDYNSGKILAEKNADVRRDPASLT 74

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILAL 135
           KMMT Y+I + ++S K+  N  + V K A        +  S ++LK     +       +
Sbjct: 75  KMMTSYVIGQAIKSGKIGPNDIVTVGKDAWATGNPIFKGSSLMFLKPGDQVSVAMLSRGI 134

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
             +S ND   A  ++++GS+  F  LM+   + +G+QNT ++   GL    Q ++ARD A
Sbjct: 135 NLQSGNDACVAMADYVAGSQDAFVSLMNKYVQSLGLQNTHFQTVHGLDANGQYSSARDMA 194

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVT 254
           ++G  L ++ P  Y  +  ++F Y N    N N LL  K  N+DGIKTG+T  +G+N+V+
Sbjct: 195 LIGQALIRDVPDEYAIYKEKEFTYNNIRQPNRNGLLWDKSLNVDGIKTGHTSGAGYNLVS 254

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           S    +  +++ VMG PT + R+  + +L+T   
Sbjct: 255 SATEGNMRLISAVMGSPTFKGREGDSKKLLTWGF 288


>gi|226331025|ref|ZP_03806543.1| hypothetical protein PROPEN_04955 [Proteus penneri ATCC 35198]
 gi|225201820|gb|EEG84174.1| hypothetical protein PROPEN_04955 [Proteus penneri ATCC 35198]
          Length = 367

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 83/270 (30%), Positives = 144/270 (53%), Gaps = 12/270 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI     + A+   S I+ID N  ++      D  R PASLTKMMT Y+I + +++ K+ 
Sbjct: 1   MIPAVPSIEAE---SYILIDYNSGKVLAEMNADVRRDPASLTKMMTSYVIGQSIRAGKIS 57

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            +  +P+ + A        +  S ++LK     T  Q    +  +S ND   A   +++G
Sbjct: 58  NSDIVPIGEEAWATGNPIFRGSSLMFLKPGDQVTVAQLTRGINLQSGNDACVAMASYVAG 117

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  +M++  K++G+QNT ++   GL    Q +TARD A++G  L ++ P  Y  + 
Sbjct: 118 SQDTFVAMMNDYVKRLGLQNTQFQTVHGLDAPGQYSTARDMALIGAALIRDVPDEYAIYK 177

Query: 214 IRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            +++ Y N   TN N LL     N+DGIKTG+T ++G+N+V S    +  +++ VMG  +
Sbjct: 178 EKEYTYNNIRQTNRNGLLWDTSLNVDGIKTGHTASAGYNLVASATEGNMRLISAVMGGHS 237

Query: 273 SQERDQKALELITSFLE-KKTLKHQQTHRK 301
            + RD ++ +L+T      +T+K  Q  ++
Sbjct: 238 PKGRDVESKKLLTWGFRFFETVKPLQVGKE 267


>gi|84394380|ref|ZP_00993099.1| D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus 12B01]
 gi|84374982|gb|EAP91910.1| D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus 12B01]
          Length = 393

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 88/273 (32%), Positives = 147/273 (53%), Gaps = 10/273 (3%)

Query: 26  RNIQLMGKILFLSIIMISMASEL--HAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPAS 79
           ++I      L  +I   S A+ +     PK ++   +++D +  ++   K+ +    PAS
Sbjct: 9   KSIFATSVALSATIATSSFAAPIVVPDAPKIAAKGFVLMDYHSGKVLAEKEMNTQLSPAS 68

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALI 136
           LTKMMT Y+I + L+   ++LN  + +S+ A  +N    SK++++  T    E+    +I
Sbjct: 69  LTKMMTSYVIGQELERGNINLNDDVVISENAWAKNFPDSSKMFIEVGTTVKVEELNRGII 128

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND + A  E I+GSE  F  LM+  A  IGM++T + N  GL + N  +T  D A+
Sbjct: 129 IQSGNDATVAMAEHIAGSEDAFVDLMNAWASSIGMKDTHFANVHGLDNPNLYSTPYDMAL 188

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTS 255
           LG  L ++ P  Y+ +S +KF Y      N N LL  K  N+DGIKTG+T  +G+++V+S
Sbjct: 189 LGQALIRDVPDEYRIYSEKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSKAGYSLVSS 248

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
                  +VAVVMG   +  R  ++ +L++   
Sbjct: 249 ATEGKMRLVAVVMGTKNANARKTESKKLLSYGF 281


>gi|167617731|ref|ZP_02386362.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis Bt4]
          Length = 381

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 87/311 (27%), Positives = 154/311 (49%), Gaps = 24/311 (7%)

Query: 44  MASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
            A      P     S +++D + NQ+      DE   PASLTK+MT Y++FE L +KK+ 
Sbjct: 12  YAPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKIT 71

Query: 100 LNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           +   +  S+      ++ S+++++     +    +  +I +S ND + A  E + GSE +
Sbjct: 72  MEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQ 131

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F  +M+ +A+++GM+NT + + +G+ D N  TTA D A L   L +++P YY  FS+++F
Sbjct: 132 FVNMMNAEAQRLGMKNTHFADVNGMPDPNHYTTAGDLATLSTHLIRDYPDYYNIFSVKEF 191

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK-------DDPIVAVVMGM 270
            Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +            +V V+MG 
Sbjct: 192 TYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRSLPGAADATRRLVTVMMGE 251

Query: 271 PTSQERDQKALELI----TSFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKKLK 319
               +R Q +++++    T+F   +  K  Q          K N     +KK   I   +
Sbjct: 252 TKESDRVQDSMKMLNYGYTAFDSVRLYKAGQPIDTPRVYKGKSNNVQVGVKKDQFITVPR 311

Query: 320 RTYSQFKKIDA 330
               + K   A
Sbjct: 312 GLADKVKPEVA 322


>gi|315618015|gb|EFU98607.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 3431]
          Length = 390

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 70/285 (24%), Positives = 140/285 (49%), Gaps = 14/285 (4%)

Query: 22  IYIQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEP 74
           + ++R + +   +   ++        I  + +       S +++D    Q+     + + 
Sbjct: 1   MLLKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQ 60

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTT 128
           R PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    + 
Sbjct: 61  RNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
                 LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q 
Sbjct: 121 RDLSRGLIVDSGNDACVALADYIAGGQRQFVKMMNNYAEKLHLKDTHFETVHGLDAPGQH 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRN 247
           ++A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  
Sbjct: 181 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSG 240

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +GFN++         ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 AGFNLIALAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 285


>gi|212636662|ref|YP_002313187.1| D-alanyl-D-alanine carboxypeptidase [Shewanella piezotolerans WP3]
 gi|212558146|gb|ACJ30600.1| D-alanyl-D-alanine carboxypeptidase [Shewanella piezotolerans WP3]
          Length = 421

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 84/280 (30%), Positives = 146/280 (52%), Gaps = 10/280 (3%)

Query: 14  FLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD- 72
            L  P  ++ +  ++         + ++   A  + AK   + +++D N  Q+       
Sbjct: 34  LLNQPIKTLLLATSVAAFSAQ--AAPVVTPNAPTVAAK---AYVLLDYNTGQIIAENNAY 88

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTE 129
           E   PASLTKMMT Y+I   ++   +  + ++ +SK A ++N    SK++++     + E
Sbjct: 89  ESLNPASLTKMMTSYVIGHEIKVGNVSPSDEVTISKNAWSKNFPDSSKMFIEVGKTVSVE 148

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           +    +I +S ND   A  E I+G+E  F  LM++ AK++GMQ++ ++N+ GL   N  T
Sbjct: 149 ELNKGIIIQSGNDACVAMAEHIAGTEDGFVDLMNSWAKQLGMQDSYFENSHGLDSDNHKT 208

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNS 248
           TA D AILG  + ++ P+ Y  +  + F Y      N N LL  K  N+DGIKTG+T  +
Sbjct: 209 TAYDMAILGAAIIRDVPEEYAVYKEKSFTYNGIKQYNRNGLLWDKSLNVDGIKTGHTSGA 268

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           G+N+VTS       +++VVMG  +   R  ++ +L+    
Sbjct: 269 GYNLVTSATKDGMRLISVVMGTKSETARKAESKKLLNYGF 308


>gi|193062785|ref|ZP_03043878.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22]
 gi|331683696|ref|ZP_08384292.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli H299]
 gi|192931428|gb|EDV84029.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22]
 gi|331078648|gb|EGI49850.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli H299]
          Length = 388

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AV+MG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAVDGQHRLIAVIMGADSAKGREEEARKLLRWGQQNFT 283


>gi|114704888|ref|ZP_01437796.1| hypothetical protein FP2506_08126 [Fulvimarina pelagi HTCC2506]
 gi|114539673|gb|EAU42793.1| hypothetical protein FP2506_08126 [Fulvimarina pelagi HTCC2506]
          Length = 482

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 116/250 (46%), Positives = 164/250 (65%), Gaps = 1/250 (0%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           M  + +A  KY+  VID N  ++    + DE RYPASLTKMMTLY+ F+ L  K++ L  
Sbjct: 24  MPMQANANAKYAGFVIDANNGKVLYEDRADEYRYPASLTKMMTLYLTFDALSKKRISLTD 83

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           ++PVS+ AA + P+K+ +        E+ I +L+T+SAND S    E+++GSE  FA +M
Sbjct: 84  KMPVSRYAAGRPPTKIGVPAGKTLQVEEAIYSLVTKSANDASVTLAEYLAGSESSFAEMM 143

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
           +  A K+GM  T YKNA+GL D  Q TTARDQA LGI LR++FPQYYKYFS R + +R R
Sbjct: 144 TRTAHKLGMTKTTYKNANGLPDSGQRTTARDQAKLGIALREHFPQYYKYFSTRSYSFRGR 203

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + NHN++L +M  +DGIKTGY   SGFN+V+S++     +VAVVMG  + + RD   ++
Sbjct: 204 RLGNHNRVLGRMTGVDGIKTGYINASGFNLVSSIKRDGKSLVAVVMGGRSGRSRDNHMVD 263

Query: 283 LITSFLEKKT 292
           L+   L K +
Sbjct: 264 LLQRTLPKAS 273


>gi|320173897|gb|EFW49075.1| D-alanyl-D-alanine carboxypeptidase [Shigella dysenteriae CDC
           74-1112]
          Length = 279

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 81/273 (29%), Positives = 136/273 (49%), Gaps = 11/273 (4%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPAS 79
           + R +      LFL       A +    P     + I++D    ++      DE   PAS
Sbjct: 7   LLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPAS 66

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN------PSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++ + L++ K+ L   + V K A           S ++LK     +      
Sbjct: 67  LTKIMTSYVVGQALKADKIKLTDMVTVGKDAWAMGNPALRGSSVMFLKPGDQVSVADLNK 126

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL    Q +TARD
Sbjct: 127 GVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARD 186

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNI 252
            A+LG  L  + P+ Y     ++F +      N N+LL   + N+DG+KTG T  +G+N+
Sbjct: 187 MALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNL 246

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           V S    D  +++VV+G  T + R  ++ +L+T
Sbjct: 247 VASATQGDMRLISVVLGAKTDRIRFNESEKLLT 279


>gi|260844620|ref|YP_003222398.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O103:H2 str.
           12009]
 gi|257759767|dbj|BAI31264.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O103:H2 str.
           12009]
          Length = 388

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFVFNLSSGFTAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AV+MG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAVDGQHRLIAVIMGADSAKGREEEARKLLRWGQQNFT 283


>gi|229019288|ref|ZP_04176114.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH1273]
 gi|229025532|ref|ZP_04181942.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH1272]
 gi|228735814|gb|EEL86399.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH1272]
 gi|228741973|gb|EEL92147.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH1273]
          Length = 385

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 89/298 (29%), Positives = 154/298 (51%), Gaps = 21/298 (7%)

Query: 34  ILFLSIIMISMA-------------SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           +LFLS   +S A             +   A+   S+IVI+ +  ++   K  +E   PAS
Sbjct: 1   MLFLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFDKNPNEKLPPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MT+ +I E ++  KL L  ++  S+ AA+   S+++L+     T  + +  +   S
Sbjct: 61  MTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTVNEMLKGIAIAS 120

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND S A  E I+GSE+ F  +M+ KAK +G++NT ++N +GL  K+  +TA D AI+  
Sbjct: 121 GNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMAR 180

Query: 200 LLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
            L K +P   KY       +R+   +   + N NKL+     +DG+KTG+T  + + +  
Sbjct: 181 ELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTA 239

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           S       +++VVMG PTS+ER+ +  +L+     +   K   T R + + +  + K 
Sbjct: 240 SAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYT-RGEKIKTVQVGKG 296


>gi|114566158|ref|YP_753312.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114337093|gb|ABI67941.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 381

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 73/280 (26%), Positives = 141/280 (50%), Gaps = 10/280 (3%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQDEP-RY 76
           +  +R+I  +  +L++ + +I+  + L A+       S +++D +  ++   K +     
Sbjct: 1   MCCRRSIAWL--VLWVMVFIIAAPTRLEAEVVEVKAESYVLMDADSGKVLLAKNEHKQLA 58

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MTL +  E L+  K+ L  ++  S+ A     S++YL+     + E  ++A+ 
Sbjct: 59  PASMTKLMTLILAMEALEEGKVTLKDKVVTSENAWKMGGSQIYLEPGEQMSYEDMLIAIA 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             SAND   A  E + G+ + F   M++KAK +G++NT + N+ GL      T+A D A+
Sbjct: 119 VGSANDACVAVAEHLEGTHQNFVDKMNHKAKMLGLKNTHFINSYGLSAPKHYTSAYDMAV 178

Query: 197 LGILLRKNFPQYYKYFSIRKF--RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
           +G       P+  +Y SI+++  R     + N NKLL      DG KTG+T  + + +  
Sbjct: 179 IGREAL-AHPKILEYSSIKEYDLRQGEFKLFNTNKLLWWYQGADGFKTGWTDEAKYCLAG 237

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
           + +     +++VVM  P      + +++L+     +   K
Sbjct: 238 TAKRDGLRLISVVMASPEKHGNFRDSMQLLNYGFARYAFK 277


>gi|323177151|gb|EFZ62741.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 1180]
          Length = 390

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 71/285 (24%), Positives = 141/285 (49%), Gaps = 14/285 (4%)

Query: 22  IYIQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEP 74
           + ++R + +   +   ++        I  + +       S +++D    Q+     + + 
Sbjct: 1   MLLKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQ 60

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTT 128
           R PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    + 
Sbjct: 61  RNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
                 LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q 
Sbjct: 121 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRN 247
           ++A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  
Sbjct: 181 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSG 240

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +GFN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 AGFNLIASAIDGQRRLIAVVMGADSAKGREEEAKKLLRWGQQNFT 285


>gi|217961569|ref|YP_002340139.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           AH187]
 gi|222097526|ref|YP_002531583.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1]
 gi|217065681|gb|ACJ79931.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           AH187]
 gi|221241584|gb|ACM14294.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1]
          Length = 396

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 158/309 (51%), Gaps = 22/309 (7%)

Query: 24  IQRNIQ-LMGKILFLSIIMISMA-------------SELHAKPKYSSIVIDVNKNQMTGF 69
           ++R    L+  +L LS   +S A             +   A+   S+IVI+ +  ++   
Sbjct: 1   MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+ AA+   S+++L+     T 
Sbjct: 61  KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            + +  +   S ND S A  E I+GSE+ F  +M+ KAK +G++NT ++N +GL  K+  
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTG 243
           +TA D AI+   L K +P   KY       +R+   +   + N NKL+     +DG+KTG
Sbjct: 181 STANDMAIMAKELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 239

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
           +T  + + +  S       +++VVMG PTS+ER+ +  +L+     +   K   T R + 
Sbjct: 240 FTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYT-RGEK 298

Query: 304 LSSTSLKKS 312
           + +  + K 
Sbjct: 299 IKTVQVGKG 307


>gi|119504244|ref|ZP_01626324.1| D-alanyl-D-alanine carboxypeptidase [marine gamma proteobacterium
           HTCC2080]
 gi|119459752|gb|EAW40847.1| D-alanyl-D-alanine carboxypeptidase [marine gamma proteobacterium
           HTCC2080]
          Length = 386

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 70/257 (27%), Positives = 135/257 (52%), Gaps = 9/257 (3%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSK 96
           ++ ++     ++A    + +++D    ++      D    PASLTK+MT YI+ E + + 
Sbjct: 20  AVTLVPAPPGINAD---AYLLMDFATGEVLVEHNIDTRLPPASLTKLMTSYILAEEVDAG 76

Query: 97  KLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
           +L L+ ++ VS+ A +QNP     S ++++     T  +    +   S ND + A  E I
Sbjct: 77  RLSLDDEVTVSRNAWSQNPKFRGSSLMWIEPGKSVTVGELEQGIAISSGNDATVAIAEHI 136

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE+ F  LM+  A+++ +  T ++N  GL + + +TTARD   L I   ++ P  Y+ 
Sbjct: 137 AGSEEAFVALMNRYAEELALTATHFENTHGLPNSDHLTTARDLGSLAIATIRDHPDRYRV 196

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           +  + + Y +    N N LL +  ++DG+KTGYT  +G+ +V S   +   +++VV+G  
Sbjct: 197 YRQQSYTYNDITQYNRNHLLREDPSVDGLKTGYTSVAGYGLVASAEREGMRLISVVLGSN 256

Query: 272 TSQERDQKALELITSFL 288
           +++ R  +   L+    
Sbjct: 257 STRSRKAETRSLLNYGF 273


>gi|56460065|ref|YP_155346.1| D-alanyl-D-alanine carboxypeptidase [Idiomarina loihiensis L2TR]
 gi|56179075|gb|AAV81797.1| D-alanyl-D-alanine carboxypeptidase [Idiomarina loihiensis L2TR]
          Length = 385

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 89/275 (32%), Positives = 143/275 (52%), Gaps = 9/275 (3%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYI 88
           L     F +  ++  A  ++AK   + I+ID    ++       E   PASLTKMMT YI
Sbjct: 14  LFSSASFAAQSLVPDAPSVNAK---AYILIDHTTGKVLAENNSRESLPPASLTKMMTSYI 70

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVST 145
           I + + + ++     + VS+ A  +N    SK++++     + ++    +I  S ND   
Sbjct: 71  IGKEMLAGRISEKDIVTVSENAWAKNFPESSKMFIEVGKEVSVKELNRGIIISSGNDACV 130

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E I+GSE  FA LM+N A++IGM+++ + N+ GL D  Q  +ARD A L   L    
Sbjct: 131 AMAEHIAGSEDAFAGLMNNYAEQIGMKDSHFANSHGLPDSEQYVSARDMATLASALINET 190

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           P  YK +S + F Y N    N N LL  +  N+DGIKTG+T  +G+++V+S       ++
Sbjct: 191 PDEYKLYSEKSFTYNNIKQYNRNSLLWDRSLNVDGIKTGHTNEAGYSLVSSAVEDGTRLI 250

Query: 265 AVVMGMPTSQERDQKALELITSFLEK-KTLKHQQT 298
           AVVMG  + Q R  ++ +L+       +T+K    
Sbjct: 251 AVVMGTNSEQARKVESKKLLNYGFRYFETVKAYSA 285


>gi|15614098|ref|NP_242401.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
           [Bacillus halodurans C-125]
 gi|10174152|dbj|BAB05254.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
           [Bacillus halodurans C-125]
          Length = 387

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 92/328 (28%), Positives = 168/328 (51%), Gaps = 24/328 (7%)

Query: 29  QLMGKILFLSIIM-ISMASELH---AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
            ++   L + +I  + +A+E     AK   S+IVI+ +  Q+   K  DE   PAS+TK+
Sbjct: 7   SIVSVCLVVGMIAPVGLAAEKQPNLAKEASSAIVIERDTGQVLFEKNSDEKLPPASMTKI 66

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MTL +I E + S K+  +  +  S+ AA+   S+++L+     +    I A+   S ND 
Sbjct: 67  MTLLLIMEAIDSGKITYDDMVRTSENAASMGGSQVFLEPGEEMSVRDMIKAIAIASGNDA 126

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           S A  E ++G+E++F  +M+ KA+++G++NT + N +GL +K+  T+A D A++   L K
Sbjct: 127 SVAMAEHLAGTEEEFVGMMNEKARQLGLKNTNFVNTNGLPEKDHYTSAYDLAMISKELLK 186

Query: 204 NFPQYYKYFSI-----RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
            +    ++ S+     RK   +   + N N+L+     +DG+KTG+T+ + + +  +   
Sbjct: 187 -YEDITEFTSVYEDYLRKGTDKEFWLVNTNRLVKFYPGVDGLKTGFTKEAKYCLTATAVK 245

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFL---------EKKTLKHQQTHRKDNLSS--- 306
               ++ VVMG PT +ER+ +  E++             E+ T       RK N  S   
Sbjct: 246 NGMRVITVVMGAPTPKERNSQITEMLDFAFSQYQTHQVYERDTYMMDLNVRKGNKKSVPI 305

Query: 307 -TSLKKSLMIKKLKRTYSQFKKIDAKAH 333
            TS   SL+ KK +   +  ++++ K  
Sbjct: 306 FTSESVSLVTKKGESIDNVTERVEWKES 333


>gi|320177929|gb|EFW52913.1| D-alanyl-D-alanine carboxypeptidase [Shigella boydii ATCC 9905]
          Length = 388

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASGVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283


>gi|170704053|ref|ZP_02894691.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria
           IOP40-10]
 gi|170131039|gb|EDS99728.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria
           IOP40-10]
          Length = 368

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 88/312 (28%), Positives = 152/312 (48%), Gaps = 21/312 (6%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  A         S +++D   N +      DE   PASLTK+MT Y++FE L  KK+ +
Sbjct: 1   MPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISM 60

Query: 101 NTQIPVSKTAATQN--PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
              I  S+         S+++++     +    +  +I +S ND + A  E + GSE +F
Sbjct: 61  EQIITPSEAVRRVGLDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQF 120

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             LM+ +A+++GM+ T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F+
Sbjct: 121 VTLMNAEAQRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFK 180

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY------KDDPIVAVVMGMPT 272
           Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +           +V+V+MG P 
Sbjct: 181 YNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEPK 240

Query: 273 SQERDQKALELIT----SFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKKLKRT 321
             ER Q +++++     +F   +  K  Q          K+N     +K    +   +  
Sbjct: 241 EGERTQDSMKMLNYGYSAFDAVRLFKGGQAMSTPRVYKGKENTVQVGVKSDQWVTVPRGL 300

Query: 322 YSQFKK-IDAKA 332
             + K  +D  A
Sbjct: 301 GDKVKPEVDVNA 312


>gi|260868661|ref|YP_003235063.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O111:H- str.
           11128]
 gi|257765017|dbj|BAI36512.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O111:H- str.
           11128]
          Length = 388

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASAIDGQRRLIAVVMGADSAKGREEEAKKLLRWGQQNFT 283


>gi|294627617|ref|ZP_06706199.1| penicillin-binding protein 6 [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292597969|gb|EFF42124.1| penicillin-binding protein 6 [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 401

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 76/250 (30%), Positives = 136/250 (54%), Gaps = 9/250 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S I++D    Q+   +   +   PAS+TK+MT Y++   +++ K+  + Q+ +S+ A  +
Sbjct: 51  SWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWRE 110

Query: 114 N-----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                  S            E     +  +S ND + A  E ++GSE+ FA LM++ A K
Sbjct: 111 GGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAK 170

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           IGM+++ + NA GL  +   +TA D A+LG  + +++P+ Y Y  I++F+  N   +N N
Sbjct: 171 IGMKDSYFVNAHGLSAEGHHSTAYDLAMLGRAMVRDYPETYAYNKIKEFQVGNIKQSNRN 230

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS-- 286
           +LL +   +DGIKTG+T  +G+ +++S +  D  ++AVVMG  + ++R   +L L+    
Sbjct: 231 RLLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNWGF 290

Query: 287 -FLEKKTLKH 295
            F E  +L  
Sbjct: 291 RFFETHSLYA 300


>gi|238784923|ref|ZP_04628922.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia bercovieri ATCC
           43970]
 gi|238714138|gb|EEQ06151.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia bercovieri ATCC
           43970]
          Length = 401

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 75/273 (27%), Positives = 138/273 (50%), Gaps = 10/273 (3%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP--KYSSIVIDVNKNQMTGF-KQDEPRYPASLTK 82
           +       +L L++     A +    P    + +++D N  ++      D+   PASLTK
Sbjct: 11  KKFTFSAGLLLLALPTAHAADDPAVPPVDAKAYVLMDYNSGKVLAEANGDQRLDPASLTK 70

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALI 136
           +M+ Y+I + +++ K+H +  + V K A        +  S ++LK             ++
Sbjct: 71  IMSSYVIGQAIKAGKVHPDDLVTVGKDAWATGNPALRGSSLMFLKPGDQVKLSDLNKGIV 130

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  ++++GS+  F  LM+N AK +G+ NT +    GL    Q +TARD A+
Sbjct: 131 IQSGNDASIALADYVAGSQDSFVGLMNNYAKALGLTNTNFMTVHGLDAPGQYSTARDMAV 190

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTS 255
           LG  L ++ P+ Y     ++F +      N N+LL   + N+DG+KTG+T  +G N+V S
Sbjct: 191 LGQALIRDVPEEYALHKEKEFTFNMIRQINRNRLLWNTNLNVDGMKTGFTTGAGHNLVAS 250

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
                  +++VV+G P+ + R  ++ +L++   
Sbjct: 251 ATDGPMRLISVVLGAPSDRVRFSESEKLLSWGF 283


>gi|90416209|ref|ZP_01224141.1| D-ala-D-ala-carboxypeptidase [marine gamma proteobacterium
           HTCC2207]
 gi|90331934|gb|EAS47148.1| D-ala-D-ala-carboxypeptidase [marine gamma proteobacterium
           HTCC2207]
          Length = 391

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 83/289 (28%), Positives = 155/289 (53%), Gaps = 13/289 (4%)

Query: 28  IQLMGKILFLSIIMISMASE-LHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           +     +L L  +    A + + A P+ ++   I+ID N   +      D P  PASL K
Sbjct: 7   VSFAAIVLSLQGLSAVQAQQLIPAPPELAAKAYILIDANTGHILVENNADMPLPPASLVK 66

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAA-----TQNPSKLYLKEKTYFTTEQGILALIT 137
           MMT YI+   + + ++  +  + +S  A        + S ++L  +T  +    +  +I 
Sbjct: 67  MMTTYIVSNEIAAGRMSKDETVLISDNAWEKGGAKTDGSTMFLNPRTRVSVSDLMRGVII 126

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E ISG E  FA +M+++A  +GM +T Y N++GL  +  ++TARD ++L
Sbjct: 127 QSGNDASIALAEHISGDEAAFADVMNHQASLLGMDSTQYLNSTGLPYEGMVSTARDLSLL 186

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              + ++ P++Y  +S + F+Y N    N N+LL +  ++DG+KTG+T  +G+ +V+S +
Sbjct: 187 ARAIIQDHPEHYSIYSEKYFKYNNINQPNRNRLLWRDSSVDGLKTGHTNAAGYCLVSSAK 246

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFL---EKKTLKHQQTHRKDN 303
            +D  +++VVMG  + + R ++  +L++      + KT+       K+N
Sbjct: 247 RRDMRLISVVMGADSDKARARETQKLLSYGFRHYDTKTIYSAGDILKEN 295


>gi|303238776|ref|ZP_07325308.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio
           cellulolyticus CD2]
 gi|302593655|gb|EFL63371.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio
           cellulolyticus CD2]
          Length = 384

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 83/309 (26%), Positives = 146/309 (47%), Gaps = 6/309 (1%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAK---PKYSSIVIDVNKNQMTGFKQDEP-RYPASLT 81
           + ++ +   L ++I        ++A+      S+I+I+ +  Q+   K  E    PAS+T
Sbjct: 5   KIMKFLSVFLLIAIFTTMHPLNIYAEFESTAGSAILIEASTGQVLYEKNSEVSMPPASIT 64

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MTL + FE +          + VS+ A     SK++L+  +  +    I+ +   SAN
Sbjct: 65  KVMTLLLGFEAISKGTAKWTDLVSVSEKAWKMEGSKMFLQVGSKVSYRDIIMGISIDSAN 124

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D   A  E++ GSE  F   M+ KAK+IG++N+ +KN +GL  +    TA+D  IL   L
Sbjct: 125 DGCIALAEYLCGSENAFVSAMNEKAKEIGLKNSTFKNCTGLPQEGHRLTAKDIVILSRYL 184

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
            +N+P+  +  S  +F + +    N N LL      DG+KTG+T  +G+ +  + +    
Sbjct: 185 IQNYPEILEIESKTEFTFNDIRQFNRNPLLGVYEGADGLKTGWTEEAGYCLAATAKQNGI 244

Query: 262 PIVAVVMGMPTSQERDQKALELITSFLEKKTL--KHQQTHRKDNLSSTSLKKSLMIKKLK 319
            ++AVV+     +ER     EL+T   +        +     DN++  + KK+    KL 
Sbjct: 245 RLIAVVLNTKDEKERQIAGQELLTYGFKNFKFLDYKKSGDIVDNINIENGKKTSTPLKLD 304

Query: 320 RTYSQFKKI 328
                   I
Sbjct: 305 NDIKVLIPI 313


>gi|299132249|ref|ZP_07025444.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2]
 gi|298592386|gb|EFI52586.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2]
          Length = 475

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 155/305 (50%), Gaps = 12/305 (3%)

Query: 39  IIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL 93
           +I I+ A  LHA        + ++ID N  ++   +   +P YPASLTK+MT Y+    +
Sbjct: 3   LIAIAAAFSLHASATPAHAEAYLLIDANSGKVLQAENATQPWYPASLTKIMTAYVTLTAV 62

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           +  ++ L+T + VS  A  Q PSK+     T  T +  +  ++ +SAND++    E + G
Sbjct: 63  KQGRISLDTLLTVSPNAVAQAPSKMGFPAGTTVTVDNALKMMMVKSANDMAVVLAEGVGG 122

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S + FA +M+  A+++GM  + + N +GL D   I++ARD  IL     ++ P+Y  +  
Sbjct: 123 SIEGFAGMMNETARQLGMTQSHFVNPNGLPDDAHISSARDIGILARAFYRDLPEYEYFAH 182

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           +   ++  R+  N NKL+ +    DG+KTG+   SGFN+V S    D  ++AVV+G P+S
Sbjct: 183 LPGIKFGRRVTMNFNKLIGRYPGADGMKTGFICASGFNLVASATRNDKHLIAVVLGAPSS 242

Query: 274 QERDQKALELITSFLEKKTLKHQQTHRK-------DNLSSTSLKKSLMIKKLKRTYSQFK 326
            +R  KA +L+        L   +            + +  +L+  +     KR  ++ +
Sbjct: 243 AQRTIKAAQLLEKGFNHSKLAWLKPSLGTVEQLPPIDAAPPNLRDQVCGPHRKRPAAEDE 302

Query: 327 KIDAK 331
             D +
Sbjct: 303 DDDVE 307


>gi|119713334|gb|ABL97398.1| D-alanyl-D-alanine carboxypeptidase [uncultured marine bacterium
           EB80_02D08]
          Length = 385

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 83/279 (29%), Positives = 141/279 (50%), Gaps = 7/279 (2%)

Query: 31  MGKILF--LSIIMI----SMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKM 83
           M KILF  LSI  I    S   +       S I+I+ N N +      E    PAS+TK+
Sbjct: 1   MKKILFILLSISTIGESQSFVPDAPELDVKSYILIEPNTNTIIAEYNSESEIEPASMTKI 60

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT Y++ + + +  + L+ ++ +S+ A     SK +++     T    +  ++ +S ND 
Sbjct: 61  MTSYVVADQISNGLISLDDEVLISEKAWRMKGSKTFIEAGKKVTVSDLLKGIMIQSGNDA 120

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           S A  E+  G+E+ F  LM++ A  +GM NTI++NA+GL D+N  ++A+D A L      
Sbjct: 121 SVAIAEYAGGTERGFVDLMNSYASSLGMNNTIFQNATGLPDENHFSSAKDLANLTSNYIN 180

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
            FP+ Y  +  ++F + N    N NKLL +  + DG+KTG+T  +G+ +V S +     +
Sbjct: 181 KFPEEYALYKQKEFTFNNIKQLNRNKLLWRDDSTDGVKTGHTEAAGYCLVGSAKRGGMRL 240

Query: 264 VAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKD 302
           + VV G  +  +R   +  L+       T +      K+
Sbjct: 241 ITVVAGSKSDNDRFLSSQRLLEYGFRFYTTQKMLIAEKE 279


>gi|332307130|ref|YP_004434981.1| Beta-lactamase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174459|gb|AEE23713.1| Beta-lactamase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 390

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 83/256 (32%), Positives = 135/256 (52%), Gaps = 8/256 (3%)

Query: 41  MISMASELHAKPKYSS---IVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSK 96
             S A  +   P  S+   I++D    ++   +  +    PASLTKMMT Y+I + + + 
Sbjct: 23  AASAAVIIPDAPTVSAKGFILVDYQTGKVIAEQNADIQIPPASLTKMMTSYVIGKEIANG 82

Query: 97  KLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            +     + +S+ A  +N    SK++++  T  +       +I +S ND   A  E I+G
Sbjct: 83  NIKDTDMVTISENAWAKNFPDSSKMFIEVGTQISVADLNRGIIVQSGNDACVAMAEHIAG 142

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           SE  FA +M+  A+K+GM +T + N+ GL D +  TT RD A L   L  + P  YK +S
Sbjct: 143 SEDAFASMMNLHAEKLGMTSTNFVNSHGLQDADHYTTPRDMATLARALITDVPNEYKVYS 202

Query: 214 IRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F Y N    N N LL  K  N+DGIKTG+T ++G+++V+S    D  ++AVVMG  +
Sbjct: 203 EKEFTYNNIKQYNRNGLLWDKSLNVDGIKTGHTSDAGYSLVSSATQGDMRLIAVVMGADS 262

Query: 273 SQERDQKALELITSFL 288
            + R  +  +L+    
Sbjct: 263 ERARKVENKKLLKYGF 278


>gi|254251303|ref|ZP_04944621.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia dolosa
           AUO158]
 gi|124893912|gb|EAY67792.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia dolosa
           AUO158]
          Length = 460

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 87/314 (27%), Positives = 157/314 (50%), Gaps = 22/314 (7%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
            +  A         S +++D   N +      DE   PASLTK+MT Y++FE L  KK+ 
Sbjct: 91  FMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKIS 150

Query: 100 LNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           +   +  S+      ++ S+++++     +    +  +I +S ND + A  E + GSE +
Sbjct: 151 MEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQ 210

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F  +M+++A+++GM++T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F
Sbjct: 211 FVTMMNDEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEF 270

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGM 270
           +Y N    N N+LL     +DG+KTG+T+ +G+ +++S +            +VAV+MG 
Sbjct: 271 KYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLISSAKRAIPGTADAQRRLVAVMMGE 330

Query: 271 PTSQERDQKALELIT----SFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKKLK 319
           P   +R Q +++++     +F   +  K  Q          KDN     +K    +   +
Sbjct: 331 PKESDRTQDSMKMLNYGYSAFDAVRLFKAGQAIATPRIYKGKDNTVQVGVKSDQWVTVPR 390

Query: 320 RTYSQFKK-IDAKA 332
               + K  +D  A
Sbjct: 391 GLGDKVKPEVDVNA 404


>gi|324327983|gb|ADY23243.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 396

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 158/309 (51%), Gaps = 22/309 (7%)

Query: 24  IQRNIQ-LMGKILFLSIIMISMA-------------SELHAKPKYSSIVIDVNKNQMTGF 69
           ++R    L+  +L LS   +S A             +   A+   S+IVI+ +  ++   
Sbjct: 1   MKRVFGILVCFMLLLSGTSVSFAQSEKTKQDKTEETTPKLAEQASSAIVIEQDTGKVLFD 60

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+ AA+   S+++L+     T 
Sbjct: 61  KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            + +  +   S ND S A  E I+GSE+ F  +M+ KAK +G++NT ++N +GL  K+  
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTG 243
           +TA D AI+   L K +P   KY       +R+   +   + N NKL+     +DG+KTG
Sbjct: 181 STANDMAIMAKELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 239

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
           +T  + + +  S       +++VVMG PTS+ER+ +  +L+     +   K   T R + 
Sbjct: 240 FTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYT-RGEK 298

Query: 304 LSSTSLKKS 312
           + +  + K 
Sbjct: 299 IKTVQVGKG 307


>gi|325844944|ref|ZP_08168309.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sp. HGF1]
 gi|325488994|gb|EGC91383.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sp. HGF1]
          Length = 389

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 81/274 (29%), Positives = 143/274 (52%), Gaps = 10/274 (3%)

Query: 30  LMGKILFLSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMM 84
           L+  +   S   +  +  + A        ++I+I+    ++   K   E   PAS+TKMM
Sbjct: 7   LISLLTCFSFSCLVHSKIVSADELVTDGKAAILIEAETGEILYEKNPHEQLAPASMTKMM 66

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           ++Y+I E + +  L  +  I VS+ AA+   S++YLK            ++   SAND  
Sbjct: 67  SMYLILESIHNGALQWDEVIRVSENAASYGGSQIYLKPGEKMIVRDLFKSIAIASANDSV 126

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
           TA  E ++GSE+ F  LM+ KAK++GM NT++KN +GL     +TT  D +I+   L ++
Sbjct: 127 TALAERVAGSEEAFVELMNQKAKELGMNNTVFKNPTGLTAAGHVTTPYDMSIIARHLLQD 186

Query: 205 FPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           +P+  ++       IR+       + N N+L+  +  +DG+KTG+T+ +G+ +  + +  
Sbjct: 187 YPEITEFSGLYEDYIRQDTESPFWLVNTNRLIKYVDGVDGLKTGFTQEAGYCLTATAQRN 246

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
              ++AVVMG   S+ R+Q+   LI    E+  L
Sbjct: 247 GMRVIAVVMGASKSEIRNQEVTRLIEYAYEQYEL 280


>gi|293375491|ref|ZP_06621770.1| putative D-alanyl-D-alanine carboxypeptidase [Turicibacter
           sanguinis PC909]
 gi|292645891|gb|EFF63922.1| putative D-alanyl-D-alanine carboxypeptidase [Turicibacter
           sanguinis PC909]
          Length = 389

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 82/274 (29%), Positives = 143/274 (52%), Gaps = 10/274 (3%)

Query: 30  LMGKILFLSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMM 84
           L+  +   S   +  +  + A        ++I+I+    ++   K   E   PAS+TKMM
Sbjct: 7   LISLLTCFSFSCLVHSKIVSADELVTDGKAAILIEAETGEILYEKNPHEQLAPASMTKMM 66

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           ++Y+I E + +  L  +  I VS+ AA+   S++YLK            ++   SAND  
Sbjct: 67  SMYLILESIHNGALQWDEVIRVSENAASYGGSQIYLKPGEKMIVRDLFKSIAIASANDSV 126

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
           TA  E ++GSE+ F  LM+ KAK++GM NT++KN +GL     +TT  D +I+   L ++
Sbjct: 127 TALAERVAGSEEAFVELMNQKAKELGMNNTVFKNPTGLTAAGHVTTPYDMSIIARHLLQD 186

Query: 205 FPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           +P+  ++       IR+       + N NKL+  +  +DG+KTG+T+ +G+ +  + +  
Sbjct: 187 YPEITEFSGLYEDYIRQDTESPFWLVNTNKLIKYVDGVDGLKTGFTQEAGYCLTATAQRN 246

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
              ++AVVMG   S+ R+Q+   LI    E+  L
Sbjct: 247 GMRVIAVVMGASKSEIRNQEVTRLIEYAYEQYEL 280


>gi|330993785|ref|ZP_08317717.1| D-alanyl-D-alanine carboxypeptidase dacF [Gluconacetobacter sp.
           SXCC-1]
 gi|329759053|gb|EGG75565.1| D-alanyl-D-alanine carboxypeptidase dacF [Gluconacetobacter sp.
           SXCC-1]
          Length = 371

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 99/285 (34%), Positives = 164/285 (57%), Gaps = 5/285 (1%)

Query: 17  YPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PR 75
            P  +    R    +G  + L  +    A+      + SSIV+D     +   +  +  R
Sbjct: 4   LPLRTFSRLRVTATVGLCIGLGGM---HAARAQYAGQVSSIVVDARTGAVLSQQDPDLRR 60

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPASLTK+MTLY+ F+ +++ ++ L  Q+PVS  AA+  PSKL L+  +  T EQ +LAL
Sbjct: 61  YPASLTKLMTLYLTFKAVRTGQVTLEQQMPVSVHAASMEPSKLGLRPGSSLTVEQAVLAL 120

Query: 136 ITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +T+SAND + A GEF+ G ++  FA +M+ +A ++GM +T+++NASGL +  Q+T+ARD 
Sbjct: 121 VTKSANDAACALGEFLGGGDETRFAAMMTREAGRLGMYDTVFRNASGLPNPEQMTSARDL 180

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
           A+L   L  ++ +YY YF++  F +    + NH+ +L      DG+KTGYT  +G N+VT
Sbjct: 181 AVLARHLIVDYGEYYHYFAVPGFYFHGHAVPNHDPMLGAYPGADGLKTGYTDEAGHNLVT 240

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTH 299
           S    +  ++ VVMG  ++  R+    EL+ +  + + +     H
Sbjct: 241 SAVRDNVRLIGVVMGAKSNSRRNTTMAELLDASFQTEGVAPAGLH 285


>gi|56698478|ref|YP_168853.1| D-alanyl-D-alanine carboxypeptidase family protein [Ruegeria
           pomeroyi DSS-3]
 gi|56680215|gb|AAV96881.1| D-alanyl-D-alanine carboxypeptidase family protein [Ruegeria
           pomeroyi DSS-3]
          Length = 477

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 103/263 (39%), Positives = 150/263 (57%), Gaps = 2/263 (0%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYII 89
           +G ILF +I MI+  S +     Y+++VID    ++      D   +PASLTKMMTLYI 
Sbjct: 13  LGLILFFAIWMIAALSGVARAAPYAAMVIDARTGEVLHATNADTRLHPASLTKMMTLYIA 72

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           FE +++ +L ++TQ+ +   AA + PSKL L+          + A   +SAND +T+ G 
Sbjct: 73  FEAVRNGELTMDTQVRIDPFAAKEPPSKLGLRAGQKIAFRYLVRAAAVKSANDAATSIGI 132

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            ISGSE  FA  M+  AK +GM  T +KNA GL +   ++TARD   LG  L  ++PQYY
Sbjct: 133 AISGSEAAFARRMNRTAKALGMTRTTFKNAHGLTESGHLSTARDMTTLGRHLLYDYPQYY 192

Query: 210 KYFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             FS R+     + + N N +LL+     DGIKTGYT+ +GFN+V S +  D+ ++A V 
Sbjct: 193 NLFSRRETSAGIKTVANTNRRLLDAYQGADGIKTGYTQAAGFNLVASAKRGDERVIATVF 252

Query: 269 GMPTSQERDQKALELITSFLEKK 291
           G  +S  R+ K  EL+     K 
Sbjct: 253 GGKSSTARNAKVAELLDLGFRKA 275


>gi|157145043|ref|YP_001452362.1| D-alanyl-D-alanine carboxypeptidase [Citrobacter koseri ATCC
           BAA-895]
 gi|157082248|gb|ABV11926.1| hypothetical protein CKO_00774 [Citrobacter koseri ATCC BAA-895]
          Length = 420

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 70/279 (25%), Positives = 136/279 (48%), Gaps = 8/279 (2%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPA 78
             ++I  ++  M     L+  +   + +  A    S +++D    Q+     + + R PA
Sbjct: 35  CRLFIAASLLAMNLSSALAADVPDFSPQPPAIQAGSWVLMDYTTGQILTAGNEHQRRNPA 94

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGI 132
           SLTK+MT Y++   + S ++  +  + V + A  +        S ++LK+    +     
Sbjct: 95  SLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKQGERVSVRDLS 154

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             LI  S ND   A  ++I+G + +F  +M++  + + +Q+T ++   GL    Q ++A 
Sbjct: 155 RGLIVDSGNDACVALADYIAGGQPQFVAMMNHYVETLKLQDTHFETVHGLDAPGQHSSAY 214

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFN 251
           D A+L   +    P++Y  +S +   +      N N LL  K  NIDG+KTG+T  +GFN
Sbjct: 215 DLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNIDGLKTGHTSGAGFN 274

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           ++ S       ++AVVMG  +++ R+ +A +L+    + 
Sbjct: 275 LIASSVDGQRRLIAVVMGAESAKGREDQARKLLQWGQQN 313


>gi|229146650|ref|ZP_04275017.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus BDRD-ST24]
 gi|228636820|gb|EEK93283.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus BDRD-ST24]
          Length = 396

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 97/346 (28%), Positives = 167/346 (48%), Gaps = 40/346 (11%)

Query: 24  IQRNIQ-LMGKILFLSIIMISMA-------------SELHAKPKYSSIVIDVNKNQMTGF 69
           ++R    L+  +L LS   +S A             +   A+   S+IVI+ +  ++   
Sbjct: 1   MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+ AA+   S+++L+     T 
Sbjct: 61  KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            + +  +   S ND S A  E I+GSE+ F  +M+ KAK +G++NT ++N +GL  K+  
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTG 243
           +TA D AI+   L K +P   KY       +R+   +   + N NKL+     +DG+KTG
Sbjct: 181 STANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 239

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRK-- 301
           +T  + + +  S       +++VVMG PTS+ER+ +  +L+     +   K   T  K  
Sbjct: 240 FTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGKKI 299

Query: 302 -----------------DNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
                             +  S  +KK   + K+K+     KK+ A
Sbjct: 300 KTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKA 345


>gi|325577705|ref|ZP_08147980.1| D-alanyl-D-alanine carboxypeptidase DacA [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160450|gb|EGC72576.1| D-alanyl-D-alanine carboxypeptidase DacA [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 395

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 86/294 (29%), Positives = 148/294 (50%), Gaps = 7/294 (2%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYI 88
           LM    F +   I     +      + +++D N   +      D+ +YPASLTKMMT Y+
Sbjct: 17  LMAASTFAASEDIQYGIAIPEVNAQTYVLMDYNSGAVLASLNPDQRQYPASLTKMMTSYV 76

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVST 145
           +   L+  K+H    + +S++A  +N    SK++L      +       +I  S ND   
Sbjct: 77  VGAALKQGKIHNEDMVTISESAWGRNFPDSSKMFLNLNQQVSVGDLNKGIIIVSGNDACV 136

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E ISG+   F   M+   ++ G++NT +    GL D NQ +TARD AI+G  + ++ 
Sbjct: 137 AVAEHISGTVANFVDTMNKYVQQFGLKNTNFTTPHGLDDPNQYSTARDMAIIGAHIIRDL 196

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY-KDDPI 263
           P+ YK ++ + F +      N N LL  K  N+DG+KTG+T  +G+N+V S     +  +
Sbjct: 197 PEEYKIYAEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASATSPNNMRL 256

Query: 264 VAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHRKDNLSSTSLKKSLMIK 316
           ++VVMG+PT + R+ ++ +L+       +TLK  + + + +  S        +K
Sbjct: 257 ISVVMGVPTYKGREVESKKLLQWGFANFETLKTYKANEEISKQSVYYGDKGEVK 310


>gi|224825266|ref|ZP_03698371.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lutiella nitroferrum
           2002]
 gi|224602187|gb|EEG08365.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lutiella nitroferrum
           2002]
          Length = 380

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 78/265 (29%), Positives = 145/265 (54%), Gaps = 4/265 (1%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYS---SIVIDVNKNQMTGFKQDEPR-YPASLTKMMT 85
           L+   + L  +  + A  +   P+ +     ++D    Q+      + R  PASLTK+MT
Sbjct: 8   LVAAAVALPSVSFANAPFVPPVPEIAGKAYYLVDFYSGQVVASSDPDKRIAPASLTKLMT 67

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
            Y+ ++ ++ K+L L+ ++ VS    T   S+++L  K   + +  I  +  +S ND   
Sbjct: 68  GYLTYKAIKEKRLTLDQKLTVSHKGWTTGGSRMFLDPKIPVSVDDLIKGMDVQSGNDACV 127

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
              E I+GSE+ F  +M+ +A+++GM NT ++NA+GL +    TT  D  IL   + + +
Sbjct: 128 TLAEAIAGSEEAFGQMMTAEARRLGMNNTQFRNATGLPNPEHYTTVHDLGILASAIIREY 187

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           P++YK +S++ F Y      N N LL +  N+DG+KTG+T ++G+N+V S R     +++
Sbjct: 188 PEFYKTYSLKSFTYNGISQPNRNLLLYRDPNVDGMKTGFTDDAGYNMVASSRRDGRRVIS 247

Query: 266 VVMGMPTSQERDQKALELITSFLEK 290
           VV+G  + + R  ++ +L+   L+ 
Sbjct: 248 VVVGTASPEARAVESSKLLNYGLQF 272


>gi|312882711|ref|ZP_07742448.1| D-alanyl-D-alanine carboxypeptidase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369672|gb|EFP97187.1| D-alanyl-D-alanine carboxypeptidase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 392

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 88/258 (34%), Positives = 139/258 (53%), Gaps = 8/258 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           F S I++  A ++ AK     +++D +  ++   K+      PASLTKMMT Y+I + L 
Sbjct: 26  FASPIVVPDAPQIAAK---GYVLMDYHSGKVLAEKEMHTKLSPASLTKMMTSYVIGQELA 82

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              + L   + +SK A  +N    SK++++  T    E+    +I +S ND   A  E I
Sbjct: 83  RGNISLQDDVTISKNAWAKNFPESSKMFIEVGTSVKVEELNRGIIIQSGNDACVAMAEHI 142

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  F  LM+  A  IGM++T + N  GL + N  +T  D A+LG  L ++ P  Y+ 
Sbjct: 143 AGSEDAFVDLMNAWADTIGMKDTHFANVHGLDNPNLYSTPYDMALLGSALIRDVPDEYRI 202

Query: 212 FSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL  K  N+DGIKTG+T N+G+++V+S       +VAVVMG 
Sbjct: 203 YSEKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLVAVVMGT 262

Query: 271 PTSQERDQKALELITSFL 288
             +  R  ++ +L++   
Sbjct: 263 KNANSRKSESKKLLSYGF 280


>gi|119775724|ref|YP_928464.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella amazonensis
           SB2B]
 gi|119768224|gb|ABM00795.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Shewanella amazonensis SB2B]
          Length = 392

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 85/293 (29%), Positives = 151/293 (51%), Gaps = 20/293 (6%)

Query: 2   LQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSII-MISMASELHAKPKYSSIVID 60
           + + I+ SA K+ L            + +M    F +   ++  A  + AK   + +++D
Sbjct: 1   MMKVIKPSAPKSMLL-----------LAIMSASAFAAPPTVVPDAPSVAAK---AYVLMD 46

Query: 61  VNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PS 116
            +  Q+   +   E   PASLTKMMT Y+I   ++   +     + ++K A ++N    S
Sbjct: 47  YHTGQIIAEEHAYEQLNPASLTKMMTSYVIGHEMKVGNISPEDDVTITKNAWSKNFPDSS 106

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
           K++++             +I +S ND   A  E I+G+E  F  +M++ AK++GM ++ +
Sbjct: 107 KMFIEVGKTVKAADLNRGIIIQSGNDACVAMAEHIAGTEDAFVDMMNSWAKQLGMTDSYF 166

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMH 235
           +N+ GL   N  TTA D AILG  L ++ P+ Y+ +S ++F +      N N LL  K  
Sbjct: 167 ENSHGLDSDNHKTTAYDMAILGAALIRDVPEEYRIYSEKEFTFNGIKQYNRNGLLWDKSM 226

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           N+DGIKTG+T  +G+N+V S    D  +++VVMG  +   R  ++ +L++   
Sbjct: 227 NVDGIKTGHTSGAGYNLVASATQDDMRLISVVMGASSEASRKAESKKLLSYGF 279


>gi|229186322|ref|ZP_04313487.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus BGSC 6E1]
 gi|228597116|gb|EEK54771.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus BGSC 6E1]
          Length = 396

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 158/309 (51%), Gaps = 22/309 (7%)

Query: 24  IQRNIQ-LMGKILFLSIIMISMA-------------SELHAKPKYSSIVIDVNKNQMTGF 69
           ++R    L+  +L LS   +S A             +   A+   S+IVI+ +  ++   
Sbjct: 1   MKRVFGILVCFMLLLSGTSVSFAQSEKMKQDKTEETAPKLAEQASSAIVIEQDTGKVLFD 60

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+ AA+   S+++L+     T 
Sbjct: 61  KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            + +  +   S ND S A  E I+GSE+ F  +M+ KAK +G++NT ++N +GL  K+  
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTG 243
           +TA D AI+   L K +P   KY       +R+   +   + N NKL+     +DG+KTG
Sbjct: 181 STANDMAIMAKELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 239

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
           +T  + + +  S       +++VVMG PTS+ER+ +  +L+     +   K   T R + 
Sbjct: 240 FTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYT-RGEK 298

Query: 304 LSSTSLKKS 312
           + +  + K 
Sbjct: 299 IKTVQVGKG 307


>gi|65321470|ref|ZP_00394429.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A2012]
 gi|118479279|ref|YP_896430.1| D-alanyl-D-alanine carboxypeptidase DacF [Bacillus thuringiensis
           str. Al Hakam]
 gi|118418504|gb|ABK86923.1| D-Ala-D-Ala carboxypeptidase DacF, Serine peptidase, MEROPS family
           S11 [Bacillus thuringiensis str. Al Hakam]
          Length = 398

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 90/311 (28%), Positives = 159/311 (51%), Gaps = 22/311 (7%)

Query: 22  IYIQRNIQ-LMGKILFLSIIMISMA-------------SELHAKPKYSSIVIDVNKNQMT 67
           + ++R    L+  +L LS   +S A             +   A+   S+IVI+ +  ++ 
Sbjct: 1   MVMKRVFGILVCFMLLLSGTSVSFAQSEKTKQDKTEETTPKLAEQASSAIVIEQDTGKVL 60

Query: 68  GFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYF 126
             K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+ AA+   S+++L+     
Sbjct: 61  FDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEM 120

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK +G++NT ++N +GL  K+
Sbjct: 121 TVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKD 180

Query: 187 QITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIK 241
             +TA D AI+   L K +P   KY       +R+   +   + N NKL+     +DG+K
Sbjct: 181 HYSTANDMAIMAKELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVK 239

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRK 301
           TG+T  + + +  S       +++VVMG PTS+ER+ +  +L+     +   K   T R 
Sbjct: 240 TGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYT-RG 298

Query: 302 DNLSSTSLKKS 312
           + + +  + K 
Sbjct: 299 EKIKTVQVGKG 309


>gi|42783191|ref|NP_980438.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987]
 gi|229174752|ref|ZP_04302276.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus MM3]
 gi|42739119|gb|AAS43046.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987]
 gi|228608742|gb|EEK66040.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus MM3]
          Length = 396

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 158/309 (51%), Gaps = 22/309 (7%)

Query: 24  IQRNIQ-LMGKILFLSIIMISMA-------------SELHAKPKYSSIVIDVNKNQMTGF 69
           ++R    L+  +L LS   +S A             +   A+   S+IVI+ +  ++   
Sbjct: 1   MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+ AA+   S+++L+     T 
Sbjct: 61  KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            + +  +   S ND S A  E I+GSE+ F  +M+ KAK +G++NT ++N +GL  K+  
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTG 243
           +TA D AI+   L K +P   KY       +R+   +   + N NKL+     +DG+KTG
Sbjct: 181 STANDMAIMAKELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 239

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
           +T  + + +  S       +++VVMG PTS+ER+ +  +L+     +   K   T R + 
Sbjct: 240 FTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYT-RGEK 298

Query: 304 LSSTSLKKS 312
           + +  + K 
Sbjct: 299 IKTVQVGKG 307


>gi|34498549|ref|NP_902764.1| D-ala-D-ala-carboxypeptidase [Chromobacterium violaceum ATCC 12472]
 gi|34104404|gb|AAQ60762.1| D-ala-D-ala-carboxypeptidase [Chromobacterium violaceum ATCC 12472]
          Length = 381

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 90/290 (31%), Positives = 150/290 (51%), Gaps = 7/290 (2%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYS---SIVIDVNKNQMTGFKQDEPR-YPASLTKMM 84
            L+   L L  +  +  + +   P+ +     ++D N  Q+   +  + R  PASLTK+M
Sbjct: 7   ALVASALALPSLGFANTAFVPPTPEIAGKAYYLLDYNSQQVLAARDPDARIEPASLTKLM 66

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T Y+ F+ L+ K+L L   + VS+       S+++L  K     +  I  +I +S ND  
Sbjct: 67  TAYLTFKALKEKRLSLEQTLTVSQRGWKTEGSRMFLDPKVPAKVDDLIKGMIVQSGNDAC 126

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
               E I+GSE  F  LM+ +A K+GM+NT +KNA+GL  +   TT  D  IL   L ++
Sbjct: 127 VTLAEAIAGSEDVFGQLMTQQALKLGMKNTQFKNATGLPHEGHYTTVHDLGILAAALIRD 186

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           +P++Y  +S++ F Y N    N N LL +  N+DG+KTGYT ++G+N+VTS       ++
Sbjct: 187 YPEFYPIYSMKSFTYNNIKQPNRNLLLYRDPNVDGMKTGYTDSAGYNMVTSSHRDGRRVI 246

Query: 265 AVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKDNLSSTSLKK 311
           +VV+G  + + R  ++ +L+     F +   L    T   D       +K
Sbjct: 247 SVVVGTASPEARAVESSKLLNYGLQFFDTPKLYAANTRVSDVSVYKGSEK 296


>gi|241661811|ref|YP_002980171.1| serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia pickettii 12D]
 gi|240863838|gb|ACS61499.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia pickettii 12D]
          Length = 400

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 90/283 (31%), Positives = 157/283 (55%), Gaps = 15/283 (5%)

Query: 43  SMASELHAK--PKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           +MA  + A      S ++ DV   Q+ G    DE   PASLTK+MT Y++FE ++  KL 
Sbjct: 32  AMAQPVPAPQVAARSWMLTDVTSGQVLGGANMDERIEPASLTKLMTAYLVFEAVRDGKLK 91

Query: 100 LNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
            +  I  ++T      + S+++L+     +  +    LI +S ND +    E + G+E  
Sbjct: 92  YDQMITPTETVRTVKTDESRMFLEAGKPASVREMTQGLIIQSGNDAALVLAEAVGGTETN 151

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F +LM+ +A+++GM+NT + NA+GL D N  +TARD +IL   L K+FPQ YK++S ++F
Sbjct: 152 FVMLMNREAERLGMKNTHFANAAGLPDPNHYSTARDLSILTAALIKDFPQDYKFYSQKEF 211

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGM 270
            Y N   +N N+LL     +DG KTG+T+++G+ +VTS           +  +++V++G 
Sbjct: 212 TYNNIKQSNRNRLLWLDPTVDGGKTGHTKSAGYCLVTSANRPLPDVPGANRRLLSVIIGT 271

Query: 271 PTSQERDQKALELITSFLE-KKTLKHQQTHRKDNLSSTSLKKS 312
            +   R Q++L+++    +   T++  Q   K+ L +  + K 
Sbjct: 272 KSDAIRTQESLKVLNYGYQFFDTVRLYQA--KEALQTPDVYKG 312


>gi|260769394|ref|ZP_05878327.1| D-alanyl-D-alanine carboxypeptidase [Vibrio furnissii CIP 102972]
 gi|260614732|gb|EEX39918.1| D-alanyl-D-alanine carboxypeptidase [Vibrio furnissii CIP 102972]
          Length = 390

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 77/266 (28%), Positives = 136/266 (51%), Gaps = 8/266 (3%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           + L+    F + I++    +L AK     +++D N  Q+      +E   PASLTK+MT 
Sbjct: 15  MSLLSATSFAAPIVVPNPPQLSAK---GYVLMDYNTGQVLVEHNANEKMNPASLTKLMTS 71

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDV 143
           Y+  + ++   +    Q+ +S+ A  +N    SK++++  T          LI +S ND 
Sbjct: 72  YVAGQEMKRGNIKPTDQVTISQKAWAKNFPDSSKMFIEVGTSVNMMDLYRGLIVQSGNDA 131

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           S A  E ++GSE  F  LM++ A+++G+ NT + N  GL      TT  D A L   + +
Sbjct: 132 SVAIAEHVAGSENAFVDLMNSWAQRLGLNNTAFTNPHGLDSDGLYTTPYDIAKLAQAIIR 191

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           + P+ Y  +S   F Y      N N LL  +  N+DG+KTG+T  +G+++VTS    +  
Sbjct: 192 DLPEIYPIYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGFTSGAGYSLVTSATNGNMR 251

Query: 263 IVAVVMGMPTSQERDQKALELITSFL 288
           +++ VMG  + + R+  + +L++   
Sbjct: 252 LISAVMGANSMKSRESDSKQLLSYGF 277


>gi|110635386|ref|YP_675594.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium
           sp. BNC1]
 gi|110286370|gb|ABG64429.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Chelativorans
           sp. BNC1]
          Length = 382

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 154/280 (55%), Gaps = 9/280 (3%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPAS 79
            ++ +R + L+    +  + + ++A           +++DV   ++   +   +  YPAS
Sbjct: 16  RLWRKRQVILLAVFCYSMLHLPALAGP--------YVLVDVGTGRVLAQENAFQRWYPAS 67

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LTK+MT Y++F  L+S +L +N+ + +S+ AA + PSK+     +  T +  +  L+  S
Sbjct: 68  LTKLMTAYVVFRELESGRLQINSPVRISQNAAKEPPSKMGYSVGSVLTLDNALKILMVLS 127

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AND++TA  E ++GSE+ F   M+ +A+++GM ++ + NA GL   +Q TTARD AIL  
Sbjct: 128 ANDIATALAESVAGSEEAFVARMNAEAQRLGMTDSHFINAHGLPGPSQFTTARDLAILAR 187

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            LR  FPQY  YFSI   R    +  N N L+ +    DG+KTGY  +SGFN+V +    
Sbjct: 188 ALRAQFPQYASYFSIEGIRNGKSVKENTNFLIGRFDGADGMKTGYICSSGFNLVATATRG 247

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTH 299
           +  + AVV+G  +  +R + A +L+T   E + L      
Sbjct: 248 ERTLAAVVLGAQSQVQRAEIAADLLTRGFETQGLGAPSIV 287


>gi|149916443|ref|ZP_01904962.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp.
           AzwK-3b]
 gi|149809713|gb|EDM69567.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp.
           AzwK-3b]
          Length = 482

 Score =  291 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 97/262 (37%), Positives = 145/262 (55%), Gaps = 2/262 (0%)

Query: 32  GKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIF 90
             I F +I M+ +         Y+++V+D    ++      D   +PASLTKMMTLY++F
Sbjct: 12  SVIAFATIWMLVVVPLSAIAAPYAAMVMDARSGEVLHAHNADTRLHPASLTKMMTLYVVF 71

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           E +++ ++ L+T + +S+ AA++ PSKL L+          I A   +SAND +TA  E 
Sbjct: 72  EAVENGEIGLDTMVTISQHAASEPPSKLGLRAGQKIRLRHLIRAAAIKSANDAATALAEA 131

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           I GSE +FA  M+  AK +GM  T +KNA GL +   ++TARD  ILG  +  ++P+YY 
Sbjct: 132 IEGSEARFARRMNRTAKAMGMTRTTFKNAHGLTESGHLSTARDMTILGRHVFYDYPEYYN 191

Query: 211 YFSIRKFRYRNRIITNHNK-LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            FS        R + + N+ LLN     DGIKTGYTR +GFN+V S     + I+A V G
Sbjct: 192 LFSRITADAGVRKVYHTNRALLNSYRGADGIKTGYTRAAGFNLVASAERGGERIIATVFG 251

Query: 270 MPTSQERDQKALELITSFLEKK 291
             ++  R+ K  EL+     K 
Sbjct: 252 GNSTASRNAKVAELLDLGFRKA 273


>gi|92119190|ref|YP_578919.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis
           X14]
 gi|91802084|gb|ABE64459.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis
           X14]
          Length = 455

 Score =  291 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 87/301 (28%), Positives = 148/301 (49%), Gaps = 8/301 (2%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEY 92
           I+  + +++++A    A    + ++I+ +  ++   +    P YPASLTKMMT Y+    
Sbjct: 23  IVLAAGLIVAIAPLRAAHATEAHLLIEADTGKVLEAENATYPWYPASLTKMMTAYVTLTA 82

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           ++  ++ L+T   VS TAA Q+PSK+  +  T  T +  +  ++ +SAND++    E + 
Sbjct: 83  VKQGRITLDTLFTVSPTAAAQSPSKMGFRPGTQVTVDNALKMMLVKSANDMAVVLAEGVG 142

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           GS   F+  M+  A+++GM  T Y N +GL    QIT+ARD  IL   +  + P+Y  + 
Sbjct: 143 GSIDGFSAEMNATAQRLGMTQTSYVNPNGLPADGQITSARDLGILARAIIHDLPEYEYFM 202

Query: 213 SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            I   RY  R+  N NKL+ +    DG KTG+   SG+N+V S       ++AVV+G  +
Sbjct: 203 RIPSIRYGRRVTRNFNKLIGRFPGADGFKTGFICASGYNLVGSATQNGKRLIAVVLGASS 262

Query: 273 SQERDQKALELITSFLEKKTLKH--QQTHRKDNLSSTS-----LKKSLMIKKLKRTYSQF 325
              R  +  +++       TL          D L+  +     L+  +   K K   S  
Sbjct: 263 GTMRAVRVAQMLERGFANNTLSWLRPALGTVDKLAPIAAAPPNLRDEMCGPKRKHPASDE 322

Query: 326 K 326
            
Sbjct: 323 D 323


>gi|30264153|ref|NP_846530.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Ames]
 gi|47529591|ref|YP_020940.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186984|ref|YP_030236.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
           Sterne]
 gi|49478519|ref|YP_038135.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141418|ref|YP_085412.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
 gi|165871194|ref|ZP_02215844.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0488]
 gi|167633524|ref|ZP_02391848.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0442]
 gi|167639446|ref|ZP_02397717.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0193]
 gi|170687106|ref|ZP_02878324.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0465]
 gi|170705633|ref|ZP_02896096.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0389]
 gi|177652667|ref|ZP_02935083.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0174]
 gi|190566126|ref|ZP_03019045.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           Tsiankovskii-I]
 gi|196034968|ref|ZP_03102375.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus W]
 gi|196038612|ref|ZP_03105920.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           NVH0597-99]
 gi|196045795|ref|ZP_03113024.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           03BB108]
 gi|218905213|ref|YP_002453047.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           AH820]
 gi|225866062|ref|YP_002751440.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           03BB102]
 gi|227816855|ref|YP_002816864.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. CDC 684]
 gi|228916716|ref|ZP_04080281.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|229602274|ref|YP_002868377.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0248]
 gi|254683845|ref|ZP_05147705.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721680|ref|ZP_05183469.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A1055]
 gi|254736192|ref|ZP_05193898.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
           Western North America USA6153]
 gi|254744081|ref|ZP_05201764.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Kruger
           B]
 gi|254754139|ref|ZP_05206174.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
           Vollum]
 gi|254758171|ref|ZP_05210198.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
           Australia 94]
 gi|301055572|ref|YP_003793783.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis CI]
 gi|30258798|gb|AAP28016.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. Ames]
 gi|47504739|gb|AAT33415.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49180911|gb|AAT56287.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
           Sterne]
 gi|49330075|gb|AAT60721.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51974887|gb|AAU16437.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
 gi|164713113|gb|EDR18640.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0488]
 gi|167512505|gb|EDR87880.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0193]
 gi|167530930|gb|EDR93617.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0442]
 gi|170129173|gb|EDS98037.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0389]
 gi|170668723|gb|EDT19468.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0465]
 gi|172082002|gb|EDT67070.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0174]
 gi|190563045|gb|EDV17011.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           Tsiankovskii-I]
 gi|195992507|gb|EDX56468.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus W]
 gi|196023235|gb|EDX61913.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           03BB108]
 gi|196030335|gb|EDX68934.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           NVH0597-99]
 gi|218534801|gb|ACK87199.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           AH820]
 gi|225785916|gb|ACO26133.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
           03BB102]
 gi|227005442|gb|ACP15185.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. CDC 684]
 gi|228842903|gb|EEM87986.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|229266682|gb|ACQ48319.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
           str. A0248]
 gi|300377741|gb|ADK06645.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 396

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 158/309 (51%), Gaps = 22/309 (7%)

Query: 24  IQRNIQ-LMGKILFLSIIMISMA-------------SELHAKPKYSSIVIDVNKNQMTGF 69
           ++R    L+  +L LS   +S A             +   A+   S+IVI+ +  ++   
Sbjct: 1   MKRVFGILVCFMLLLSGTSVSFAQSEKTKQDKTEETTPKLAEQASSAIVIEQDTGKVLFD 60

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+ AA+   S+++L+     T 
Sbjct: 61  KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            + +  +   S ND S A  E I+GSE+ F  +M+ KAK +G++NT ++N +GL  K+  
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTG 243
           +TA D AI+   L K +P   KY       +R+   +   + N NKL+     +DG+KTG
Sbjct: 181 STANDMAIMAKELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 239

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
           +T  + + +  S       +++VVMG PTS+ER+ +  +L+     +   K   T R + 
Sbjct: 240 FTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYT-RGEK 298

Query: 304 LSSTSLKKS 312
           + +  + K 
Sbjct: 299 IKTVQVGKG 307


>gi|229111549|ref|ZP_04241100.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock1-15]
 gi|228671931|gb|EEL27224.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock1-15]
          Length = 385

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 89/298 (29%), Positives = 152/298 (51%), Gaps = 21/298 (7%)

Query: 34  ILFLSIIMISMASELHAKP-------------KYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           +L LS   +S A     KP               S+IVI+ +  ++   K  +E   PAS
Sbjct: 1   MLLLSGTSVSFAQSEKTKPEKTEETTPKLAEQASSAIVIEQDTGKVLFDKNPNEKLPPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MT+ +I E ++  KL L  ++  S+ AA+   S+++L+     T  + +  +   S
Sbjct: 61  MTKIMTMLLIMEEVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTVNEMLKGIAIAS 120

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND S A  E I+GSE+ F  +M+ KAK +G++NT ++N +GL  K+  +TA D AI+  
Sbjct: 121 GNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMAR 180

Query: 200 LLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
            L K +P   KY       +R+   +   + N NKL+     +DG+KTG+T  + + +  
Sbjct: 181 ELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTA 239

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           S       +++VVMG PTS+ER+ +  +L+     +   K   T R + + +  + K 
Sbjct: 240 SAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYT-RGEKIKTVQVGKG 296


>gi|167736880|ref|ZP_02409654.1| penicillin-binding protein 6 [Burkholderia pseudomallei 14]
          Length = 376

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 154/310 (49%), Gaps = 21/310 (6%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  A         S +++D + NQ+      DE   PASLTK+MT Y++FE L +KK+ +
Sbjct: 8   VPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 67

Query: 101 NTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
              +  S+      ++ S+++++     +    +  +I +S ND + A  E + GSE +F
Sbjct: 68  EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 127

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+ +A+++GM+NT + + +G+ D N  TTA D A L   L +++P YY  FS+++F 
Sbjct: 128 VNMMNAEAQRLGMKNTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFT 187

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMP 271
           Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +            +V V+MG  
Sbjct: 188 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGET 247

Query: 272 TSQERDQKALELI----TSFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKKLKR 320
              +R Q +++++    T+F   +  K  Q          K N     +KK   I   + 
Sbjct: 248 KESDRVQDSMKMLNYGYTAFDSVRLYKASQPIDTPRVYKGKSNNVQVGVKKDQFITVPRG 307

Query: 321 TYSQFKKIDA 330
              + K   A
Sbjct: 308 LADKVKPEVA 317


>gi|47568129|ref|ZP_00238833.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
 gi|47555119|gb|EAL13466.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
          Length = 396

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 158/309 (51%), Gaps = 22/309 (7%)

Query: 24  IQRNIQ-LMGKILFLSIIMISMA-------------SELHAKPKYSSIVIDVNKNQMTGF 69
           ++R    L+  +L LS   +S A             +   A+   S+IVI+ +  ++   
Sbjct: 1   MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+ AA+   S+++L+     T 
Sbjct: 61  KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            + +  +   S ND S A  E I+GSE+ F  +M+ KAK +G++NT ++N +GL  K+  
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTG 243
           +TA D AI+   L K +P   KY       +R+   +   + N NKL+     +DG+KTG
Sbjct: 181 STANDMAIMAKELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTG 239

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
           +T  + + +  S       +++VVMG PTS+ER+ +  +L+     +   K   T R + 
Sbjct: 240 FTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYT-RGEK 298

Query: 304 LSSTSLKKS 312
           + +  + K 
Sbjct: 299 IKTVQVGKG 307


>gi|258511715|ref|YP_003185149.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478441|gb|ACV58760.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 414

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 74/253 (29%), Positives = 126/253 (49%), Gaps = 7/253 (2%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHL 100
              AS   AK   S++++D    ++   K    R P AS+TK+MTL +IFE + S KL  
Sbjct: 50  APAASVDLAKQARSAVLMDFATGKVLYAKNAHERLPMASITKIMTLLLIFEAIDSGKLKW 109

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
             ++  S+ AA+   S+++L+     T    +  +   SAND   A  E + GSE+ F  
Sbjct: 110 TDRVQASERAASMGGSQIFLEPGETMTVRDLVKGIAIASANDACVAMAEHLDGSEEAFVA 169

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI-----R 215
            M+ +AK++GM +T + N +GL   N  ++A D A++   L    P+   + S+     R
Sbjct: 170 RMNQRAKELGMTDTHFANCNGLPAPNHYSSAHDIAVMSRALL-MHPEITAFTSVYSDYLR 228

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           K       + N NKL+     +DG+KTGYT+ + + +  + +     ++AVVMG P    
Sbjct: 229 KDTDHPLWLVNTNKLVRFYDGVDGLKTGYTQEAKYCLSATAKRDGFRVIAVVMGEPKPTV 288

Query: 276 RDQKALELITSFL 288
           R+ +   ++    
Sbjct: 289 RNAEIAAMLNYAF 301


>gi|167844088|ref|ZP_02469596.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei B7210]
          Length = 376

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 85/310 (27%), Positives = 154/310 (49%), Gaps = 21/310 (6%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  A         S +++D + NQ+      DE   PASLTK+MT Y++FE L +KK+ +
Sbjct: 8   VPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 67

Query: 101 NTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
              +  S+      ++ S+++++     +    +  +I +S ND + A  E + GSE +F
Sbjct: 68  EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 127

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+ +A+++GM++T + + +G+ D N  TTA D A L   L +++P YY  FS+++F 
Sbjct: 128 VNMMNAEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFT 187

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMP 271
           Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +            +V V+MG  
Sbjct: 188 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGET 247

Query: 272 TSQERDQKALELI----TSFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKKLKR 320
              +R Q +++++    T+F   +  K  Q          K N     +KK   I   + 
Sbjct: 248 KESDRVQDSMKMLNYGYTAFDSVRLYKAGQPIGTPRVYKGKSNNVQVGVKKDQFITVPRG 307

Query: 321 TYSQFKKIDA 330
              + K   A
Sbjct: 308 LADKVKPEVA 317


>gi|290476200|ref|YP_003469100.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Xenorhabdus bovienii SS-2004]
 gi|289175533|emb|CBJ82336.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Xenorhabdus bovienii SS-2004]
          Length = 402

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 80/254 (31%), Positives = 133/254 (52%), Gaps = 8/254 (3%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           +M   +      + I+ID N  ++   K  D  R PASLTKMMT Y+I + ++S K+  N
Sbjct: 35  TMIPGVPQTDAEAYILIDYNSGKILAEKNSDIRRDPASLTKMMTSYVIGQAIKSGKIGPN 94

Query: 102 TQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
             + V K A        +  S ++LK     +       +  +S ND   A  ++++GS+
Sbjct: 95  DTVTVGKDAWATGNPVFKGSSLMFLKPGDQVSVAMLSRGINLQSGNDACVAMADYVAGSQ 154

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             F  LM+   + +G+QNT ++   GL    Q ++A D A++G  L ++ P  Y  +  +
Sbjct: 155 DAFVNLMNKYVQNLGLQNTHFETVHGLDAAGQYSSAHDMALIGQALIRDVPDEYAIYKEK 214

Query: 216 KFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           +F Y N    N N LL  K  N+DGIKTG+T  +G+N+V+S    +  +++VVMG PT +
Sbjct: 215 EFTYNNIHQPNRNGLLWDKSLNVDGIKTGHTSGAGYNLVSSATESNMRLISVVMGSPTFK 274

Query: 275 ERDQKALELITSFL 288
            R+  + +L+T   
Sbjct: 275 GRETDSKKLLTWGF 288


>gi|320015830|gb|ADV99401.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 401

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 76/254 (29%), Positives = 133/254 (52%), Gaps = 11/254 (4%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLN 101
             A ++ AK   + +++D N  ++      + R  PASLTK+M+ Y+I + +++ K+  +
Sbjct: 33  PAAPQIDAK---AYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPD 89

Query: 102 TQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
             + V K A        +  S ++LK             ++ +S ND S A  ++++GS+
Sbjct: 90  DLVTVGKDAWATGNPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQ 149

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             F  LM+N AK +G+ NT +    GL    Q +TARD A+LG  L ++ P+ Y     +
Sbjct: 150 DSFVGLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEK 209

Query: 216 KFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           +F +     TN N+LL     N+DG+KTGYT   G+N+V S       +++VV+G P+ +
Sbjct: 210 EFTFNKIRQTNRNRLLWNSSLNVDGMKTGYTNGVGYNLVASATDGPMRLISVVLGAPSDK 269

Query: 275 ERDQKALELITSFL 288
            R  ++ +L+T   
Sbjct: 270 VRFSESEKLLTWGF 283


>gi|310642625|ref|YP_003947383.1| d-ala-d-ala carboxypeptidase dacf; serine peptidase; merops family
           s11 [Paenibacillus polymyxa SC2]
 gi|309247575|gb|ADO57142.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Paenibacillus polymyxa SC2]
          Length = 397

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 81/301 (26%), Positives = 152/301 (50%), Gaps = 10/301 (3%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  A+EL A    S+I++D +   +   K   E   PAS+TK+MT+ +  E +   KL L
Sbjct: 36  VGSAAEL-APEALSAILMDADTGTVIYEKNSREKLPPASITKIMTMLLTMEAIHDGKLKL 94

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
             ++  S+ A++   S+++L+     T ++ +  +   S ND S A  E I+GSE+ F  
Sbjct: 95  TDKVRASEYASSMGGSQIFLEPGEEMTVDEMLKGIAMASGNDASVAMAEKIAGSEQAFVE 154

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IR 215
           +M+ K +++G+++T + N +GL  +N  ++A D A++   L K +PQ  KY       +R
Sbjct: 155 MMNAKVQQLGLKDTHFANCNGLPVENHYSSAHDIAVMSRELLK-YPQITKYTGAYQDYLR 213

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           K   +   + N NKL+      DG+KTGYT  + F +  + +     +VAVV+G P ++ 
Sbjct: 214 KSSVKPFWLVNTNKLVRFYTGADGLKTGYTSEAKFCLSATAKRDGLRVVAVVLGEPNTKI 273

Query: 276 RDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           R+ +   +      + T+K       + L S  ++K + + +L+    +   +  K    
Sbjct: 274 RNNEVSSMFDYAFSQYTMKS-IYKPGEKLGSVKVEKGV-LPELEIQADRSYSVLVKKGGN 331

Query: 336 Q 336
           +
Sbjct: 332 K 332


>gi|307728308|ref|YP_003905532.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp.
           CCGE1003]
 gi|307582843|gb|ADN56241.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp.
           CCGE1003]
          Length = 409

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 84/327 (25%), Positives = 160/327 (48%), Gaps = 24/327 (7%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP--KYSSIVIDVNKNQMTGF-KQDEPRYPASL 80
           + R I L G +L  +++  +  +++        S +++D   NQ+      DE   PASL
Sbjct: 22  LSRAIAL-GVVLPATLVSSAAFAQVPPPAVNARSWVLVDATSNQVLASGNPDERVEPASL 80

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITR 138
           TK+MT Y++FE LQ+KK+ ++  +   +       + S+++++     T    +  +I +
Sbjct: 81  TKLMTAYLVFEALQTKKITMDQTVTPGEAVRRVRTDESRMFIEANKPVTVHDLVYGMIVQ 140

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND + A  E + GSE +F  +M+ +A+++GM +T + + +G+ D    TTA D A+L 
Sbjct: 141 SGNDAAIALAELVGGSEAQFVNMMNTEAQRLGMTHTHFADVNGMPDPQHYTTAGDLAVLS 200

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             L ++FP YY  FS+++F Y      N N+LL     +DG+KTG+T+ +G+ ++ S + 
Sbjct: 201 ARLIRDFPDYYNIFSVKEFTYNKIKQPNRNRLLWIDPTVDGLKTGHTQAAGYCLIASAKR 260

Query: 259 K-------DDPIVAVVMGMPTSQERDQKALELITSFLE-KKTLKHQQTHR---------- 300
                      +V+V+MG     +R Q +L+++        T++  +  +          
Sbjct: 261 SLPGTPDASRRLVSVMMGETKEHDRVQDSLKMLNYGYSAYDTVRLYKASQVVGTPRVYKG 320

Query: 301 KDNLSSTSLKKSLMIKKLKRTYSQFKK 327
             +     +K    I   K    + K 
Sbjct: 321 SQDTVQIGVKSDQYITVPKGMADKVKP 347


>gi|228922828|ref|ZP_04086126.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228836883|gb|EEM82226.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 385

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 89/298 (29%), Positives = 155/298 (52%), Gaps = 21/298 (7%)

Query: 34  ILFLSIIMISMA-------------SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           +L LS   +S A             +   A+   S+IVI+ +  ++   K  +E   PAS
Sbjct: 1   MLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFDKNPNEKLPPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MT+ +I E ++  KL L  ++  S+ AA+   S+++L+     T  + +  +   S
Sbjct: 61  MTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTLNEMLKGIAIAS 120

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND S A  E I+GSE+ F  +M+ KAK +G++NT ++N +GL  K+  +TA D AI+  
Sbjct: 121 GNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMAR 180

Query: 200 LLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
            L K +P   KY       +R+   +   + N NKL+     +DG+KTG+T  + + +  
Sbjct: 181 ELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTA 239

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           S +     +++VVMG PTS+ER+ +  +L+     + T K   T R + + +  + K 
Sbjct: 240 SAQKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYTTKKLYT-RGEKIKTVQVGKG 296


>gi|86357959|ref|YP_469851.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42]
 gi|86282061|gb|ABC91124.1| probable D-alanyl-D-alanine carboxypeptidase protein [Rhizobium
           etli CFN 42]
          Length = 354

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 104/285 (36%), Positives = 161/285 (56%), Gaps = 4/285 (1%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTK 82
           + +  +L    L  +++M + A    A+   +S V+D    Q+     QD+  YPASLTK
Sbjct: 65  MTKTSRLRATALSSALLMCAFA---QAEAGQASFVVDAQSGQVLEASNQDDLNYPASLTK 121

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           MMTLY+ FE L   +L  + ++ +S+ A ++ P KL +      T  + + ++I  SAND
Sbjct: 122 MMTLYLAFEALHEGRLTWDQKLTMSENAESKEPFKLAIGAGRQVTLREAVESIIVLSAND 181

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E + GSE+ FA  M++KA ++GM++T++KN SGL D  Q+TTARD A LG+ L 
Sbjct: 182 SAVAIAEQLGGSEQTFARTMTDKAHQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLM 241

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           ++FP+ +K FS+R F++R      HN L+ +   +DGIKTGYT  SG+N+VTS       
Sbjct: 242 RDFPEEFKLFSMRGFKFRGMKFRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKDGRR 301

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSST 307
           +V VVMG  T+  RD +   L+   L   +     T       +T
Sbjct: 302 LVGVVMGEKTASLRDDRMASLLDGALPSPSTATASTTPGKQPGAT 346


>gi|292898840|ref|YP_003538209.1| penicillin-binding protein 5 [Erwinia amylovora ATCC 49946]
 gi|291198688|emb|CBJ45797.1| penicillin-binding protein 5 [Erwinia amylovora ATCC 49946]
          Length = 404

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 83/276 (30%), Positives = 148/276 (53%), Gaps = 18/276 (6%)

Query: 31  MGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQ-DEPRYPASL 80
            G ++ LS+ +++ A +++ K            + I+ID N  ++   K  D  R PASL
Sbjct: 15  AGMLIALSLNVVAYADDVNIKTMIPGVPEIDAEAYILIDYNSGKVLAEKNADARRDPASL 74

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILA 134
           TKMMT Y+I + +++ K+H + ++ V K A        +  S ++LK        Q    
Sbjct: 75  TKMMTSYVIGQAIKAGKIHQDDRVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVSQLTRG 134

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           ++ +S ND   A  ++++GS+  F  LM+N  K +G+QNT ++   GL  + Q ++ARD 
Sbjct: 135 IVLQSGNDACVAMADYVAGSQDTFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYSSARDM 194

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIV 253
           A++G  L ++ P  Y  +  ++F + N    N N LL   + N+DGIKTG+T ++G+N+V
Sbjct: 195 ALIGRALIRDVPDEYAVYHEKEFTFNNIRQMNRNGLLWDTNLNVDGIKTGHTESAGYNLV 254

Query: 254 TSLRYK-DDPIVAVVMGMPTSQERDQKALELITSFL 288
            S        +++ VMG  T + R+ ++ +L+T   
Sbjct: 255 ASATEGQQMRLISTVMGGHTYKGRETESKKLLTWGF 290


>gi|304395655|ref|ZP_07377538.1| Beta-lactamase [Pantoea sp. aB]
 gi|304356949|gb|EFM21313.1| Beta-lactamase [Pantoea sp. aB]
          Length = 420

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 80/275 (29%), Positives = 146/275 (53%), Gaps = 17/275 (6%)

Query: 31  MGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQ-DEPRYPASL 80
           +G ++ +S+   ++A +++ K            + ++ID N  ++   K  D  R PASL
Sbjct: 32  VGSLIAISLSHAAIADDVNLKTMIPGVPDIDAEAYVLIDYNSGKVLAEKNADARRDPASL 91

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILA 134
           TKMMT Y+I + +++ K+H +  + V   A        +  S ++LK        Q    
Sbjct: 92  TKMMTSYVIGQAVKAGKIHQDDLVTVGPDAWATGNPVFKGSSLMFLKPGDRVPVSQLTRG 151

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           ++ +S ND   A  ++++GS+  F  LM+N  K +G+QNT +    GL  + Q ++ARD 
Sbjct: 152 IVLQSGNDACVAMADYVAGSQDAFVNLMNNYVKALGLQNTHFGTVHGLDAEGQYSSARDM 211

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIV 253
           A++G  L ++ P+ Y  +  ++F + N    N N LL   + N+DGIKTG+T ++G+N+V
Sbjct: 212 ALIGQALIRDVPEEYAVYKEKEFTFNNIRQMNRNGLLWDTNLNVDGIKTGHTNSAGYNLV 271

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            S       +++ VMG  T + R+ ++ +L+T   
Sbjct: 272 ASATEGQMRLISAVMGGHTYKGRETESKKLLTWGF 306


>gi|332162265|ref|YP_004298842.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606331|emb|CBY27829.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325666495|gb|ADZ43139.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 396

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 76/278 (27%), Positives = 137/278 (49%), Gaps = 10/278 (3%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMA--SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
             +  + +     +L L++     A      A    + +++D N  ++      D+   P
Sbjct: 5   PPFKLKKLTFSAGLLLLALPYAHAADSPAAPAIDAKAYVLMDYNSGKVLAEGNSDQRLDP 64

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQG 131
           ASLTK+M+ Y+I + +++ K+H +  + V K A        +  S ++LK          
Sbjct: 65  ASLTKIMSSYVIGQAIKAGKVHPDDLVTVGKDAWATGNPALRGSSLMFLKPGDQVKLSDL 124

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
              ++ +S ND S A  ++I+GS+  F  LM+N AK +G+ NT +    GL    Q +TA
Sbjct: 125 NKGIVIQSGNDASIALADYIAGSQDSFVGLMNNYAKALGLNNTNFMTVHGLDAPGQYSTA 184

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGF 250
            D A+LG  L ++ P  Y     ++F +      N N+LL   + N+DG+KTG+T  +G 
Sbjct: 185 HDMAVLGQALIRDVPDEYALHKEKEFTFNKIRQINRNRLLWSTNLNVDGMKTGFTAGAGH 244

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           N+V S       +++VV+G P+ + R  ++ +L+T   
Sbjct: 245 NLVASATDGPMRLISVVLGAPSDRVRFSESEKLLTWGF 282


>gi|89899727|ref|YP_522198.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodoferax ferrireducens
           T118]
 gi|89344464|gb|ABD68667.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Rhodoferax ferrireducens T118]
          Length = 414

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 84/276 (30%), Positives = 143/276 (51%), Gaps = 7/276 (2%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
            ++A    A P  + +++D +  ++      DEP  PASLTKMMT Y++ + L+S KL  
Sbjct: 56  TTLAGSPPALPAKAWLLMDFDSGEVLASANPDEPLPPASLTKMMTSYLVEQALRSGKLKQ 115

Query: 101 NTQIPVSKTAATQNPSK---LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
              + VS+ A  +  S    +YL   +  T    +  +I +S ND S A  E ++GSE+ 
Sbjct: 116 TDLVSVSQNAWCRGSSTESCMYLPLNSQATVIDILRGIIIQSGNDASKAIAEHMAGSEEG 175

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           FA LM+ +A ++GM +T + N +GL D    ++ARD AIL   +  +   YY  ++ R+F
Sbjct: 176 FAKLMNAEALRLGMTHTHFVNPTGLPDPAHKSSARDLAILARAIIHDSVDYYPIYAEREF 235

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           +Y      N N LL     +DG+KTG+T ++G+ +VTS +     ++ V++   ++Q R 
Sbjct: 236 KYNGIKQGNRNALLYTDPTVDGLKTGHTEDAGYCLVTSSKRNGMRLITVILNTHSAQARA 295

Query: 278 QKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSL 313
            +   L+       +   + T  + N   T+ K S 
Sbjct: 296 DETRTLLGWGF---SSFEKATPIQPNTVVTTAKVSF 328


>gi|116250789|ref|YP_766627.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255437|emb|CAK06513.1| putative D-alanyl-D-alanine carboxypeptidase (penicillin-binding
           protein) [Rhizobium leguminosarum bv. viciae 3841]
          Length = 464

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 101/268 (37%), Positives = 165/268 (61%), Gaps = 1/268 (0%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMM 84
           R   +   +  +  + +++++ L A    +S+++D    ++   +  +   +PASLTKMM
Sbjct: 34  RGKCMRKLLAAVLTVTLAVSAPLAALAGNASLILDARTGKVLASENADTLNHPASLTKMM 93

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TLY+ FE L+  K+  +T I +SK AA++ P+KL +K     T  + +  +I +SAND +
Sbjct: 94  TLYLTFEALKRGKITWDTPIKMSKYAASRPPTKLGVKAGGTITVREAVYGMIVKSANDAA 153

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
           +A GE ++GSE  FA +M+ KA+++GM  T++ NASGL D  Q+TTARD + L I L KN
Sbjct: 154 SAMGEKLAGSESGFARVMTAKARQLGMSRTVFVNASGLPDGRQVTTARDMSTLAIALMKN 213

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           +P  Y+ FS   F +R R +  HN L+ +   +DGIKTGYT  SGFN+V+++R  +  +V
Sbjct: 214 YPNEYRLFSTASFNFRGRTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVV 273

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKT 292
            VV+G  T++ RD K   L+  +L + +
Sbjct: 274 GVVLGGRTARSRDAKMAGLLDRYLGRAS 301


>gi|317121980|ref|YP_004101983.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591960|gb|ADU51256.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           marianensis DSM 12885]
          Length = 438

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 81/239 (33%), Positives = 126/239 (52%), Gaps = 7/239 (2%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V+D    ++   K  DEPR+PAS++K+MTL +  E +Q+ ++ L  Q+ VS  A     
Sbjct: 89  LVMDAASGRVLWAKNADEPRHPASISKLMTLLLTLEAIQAGQIRLQDQVTVSPRAQGTPG 148

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S  +L+     T E  I A+   SAND   A  E+ISG   +F   M+ +A+++G+  T 
Sbjct: 149 STAFLEVGERITVEDLIKAVAVASANDACVALAEYISGDVGRFVQRMNRRAQELGLTRTR 208

Query: 176 YKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSI-----RKFRYRNRIITNHNK 229
           + +  GL D      +ARD A+L   + +  P+  +Y SI     RK   R   +TN NK
Sbjct: 209 FVDPHGLTDQPGNRMSARDIAVLSRYMIQYHPEILRYTSIWEDWLRKGTDREFWLTNTNK 268

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           L+     +DG+KTG T  SG ++V + R  DD  + VV+G P S  R ++A  L+    
Sbjct: 269 LVAWYEGVDGLKTGLTDESGPSVVVTARKGDDRFIVVVLGSPDSNTRWREASRLLDWAF 327


>gi|308048532|ref|YP_003912098.1| penicillin-binding protein 6 [Ferrimonas balearica DSM 9799]
 gi|307630722|gb|ADN75024.1| penicillin-binding protein 6 [Ferrimonas balearica DSM 9799]
          Length = 387

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 78/273 (28%), Positives = 143/273 (52%), Gaps = 9/273 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQD-EPRYPAS 79
           ++R +     +L +S  + +  S +   P  ++   +++D    ++       E R PAS
Sbjct: 4   VKRTLATAAAVL-MSASVTAAPSVIPNAPTVAAGSYVLMDFKTGRVLAENNAYEQRAPAS 62

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALI 136
           LTKMMT Y++ + L    +     + +S  A  +N    S ++++             ++
Sbjct: 63  LTKMMTSYVLGQELNRGNVRETDMVKISNNAWAKNFPGSSVMWIEVGKEVNLMDLYRGMV 122

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND   A  E ++G+E  +  LM+  + ++GM +T + NA GL   +Q+TTA D AI
Sbjct: 123 VQSGNDACVAIAEHVAGTESAYTDLMNAWSGQLGMADTHFANAHGLDATDQVTTAYDMAI 182

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTS 255
           LG  + ++ PQYY  +S+++F +      N N LL  +  N+DG+KTG+T  +G+N+V+S
Sbjct: 183 LGRAIIRDIPQYYPLYSLKEFTFNGIRQHNRNGLLWDRSLNVDGMKTGHTNGAGYNLVSS 242

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
               D  ++AVVMG  + Q R+ ++ +L+    
Sbjct: 243 ATKGDMRLIAVVMGAKSPQSREAESKKLLNYGF 275


>gi|308186017|ref|YP_003930148.1| D-alanine carboxypeptidase [Pantoea vagans C9-1]
 gi|308056527|gb|ADO08699.1| D-alanine carboxypeptidase [Pantoea vagans C9-1]
          Length = 420

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 81/275 (29%), Positives = 145/275 (52%), Gaps = 17/275 (6%)

Query: 31  MGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQ-DEPRYPASL 80
           +G ++  S+   ++A +++ K            + ++ID N  ++   K  D  R PASL
Sbjct: 32  VGSLIAFSLSHAAIADDVNLKTMIPGVPDIDAEAYVLIDYNSGKVLAEKNADARRDPASL 91

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILA 134
           TKMMT Y+I + +++ K+H +  + V   A        +  S ++LK        Q    
Sbjct: 92  TKMMTSYVIGQAVKAGKIHQDDMVTVGPDAWATGNPVFKGSSLMFLKPGDRVPVSQLTRG 151

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           ++ +S ND   A  ++++GS+  F  LM+N  K IG+QNT +    GL  + Q ++ARD 
Sbjct: 152 IVLQSGNDACVAMADYVAGSQDAFVNLMNNYVKAIGLQNTHFGTVHGLDAEGQYSSARDM 211

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIV 253
           A++G  L ++ P+ Y  +  ++F + N    N N LL   + N+DGIKTG+T ++G+N+V
Sbjct: 212 ALIGQALIRDVPEEYAVYKEKEFTFNNIRQMNRNGLLWDTNLNVDGIKTGHTNSAGYNLV 271

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            S       +++ VMG  T + R+ ++ +L+T   
Sbjct: 272 ASATEGQMRLISAVMGGHTFKGRETESKKLLTWGF 306


>gi|157962970|ref|YP_001503004.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella pealeana ATCC
           700345]
 gi|157847970|gb|ABV88469.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella pealeana ATCC
           700345]
          Length = 390

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 84/280 (30%), Positives = 146/280 (52%), Gaps = 10/280 (3%)

Query: 14  FLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD- 72
            L  P  ++    ++  +      + ++   A  + AK   + +++D N  Q+   +   
Sbjct: 3   LLNKPLKTLLFATSVAALSAH--AAPVVTPNAPTVAAK---AYVLMDYNTGQIIAEENAY 57

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTE 129
           E   PASLTKMMT Y+I   ++   +  + ++ +SK A ++N    SK++++     T E
Sbjct: 58  ESLNPASLTKMMTSYVIGHEIKVGNVSPSDEVTISKKAWSKNFPDSSKMFIEVGKKVTVE 117

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
                +I +S ND   A  E I+G+E  F  LM++ AK++GMQ++ ++N+ GL   N  +
Sbjct: 118 DLNKGIIIQSGNDACVAMAEHIAGTEDGFVDLMNSWAKQLGMQDSYFENSHGLDSDNHKS 177

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNS 248
           TA D AILG  + ++ P+ Y  +  + F Y      N N LL  K  ++DGIKTG+T  +
Sbjct: 178 TAYDMAILGAAIIRDVPEEYAVYKEKSFTYNGIKQYNRNGLLWDKSLSVDGIKTGHTSGA 237

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           GFN+VTS       +++VVMG  +   R  ++ +L+    
Sbjct: 238 GFNLVTSATKDGMRLISVVMGTKSEAARKAESKKLLNYGF 277


>gi|85058773|ref|YP_454475.1| D-alanyl-D-alanine carboxypeptidase fraction A [Sodalis
           glossinidius str. 'morsitans']
 gi|84779293|dbj|BAE74070.1| penicillin-binding protein 5 [Sodalis glossinidius str.
           'morsitans']
          Length = 403

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 81/275 (29%), Positives = 142/275 (51%), Gaps = 17/275 (6%)

Query: 31  MGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGF-KQDEPRYPASL 80
           +  +L + ++  S A +++ K            S I+ID N  ++      D  R PASL
Sbjct: 15  LSTVLVMGVVSTSFADDVNLKTMIPGVPQIDAESYILIDYNSGKVLTEMNADVRRDPASL 74

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILA 134
           TKMMT Y+I + ++S K+  N  + V+K A        +  S ++LK        Q    
Sbjct: 75  TKMMTSYVIGQAIKSGKITPNDVVTVNKDAWATGNPVFKGSSLMFLKPGDRVPVSQLNRG 134

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +I +S ND   A  ++++GS+  F  LM+N    +G+QNT ++   GL    Q ++ARD 
Sbjct: 135 IILQSGNDACVAMADYVAGSQDAFVGLMNNYVGALGLQNTHFETVHGLDAPGQFSSARDM 194

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIV 253
           A++G  L ++ P  Y  +  ++F + N    N N LL   + N+DGIKTG+T ++G+N+V
Sbjct: 195 AMIGKALIRDVPDEYATYKEKEFTFNNIRQMNRNGLLWDSNLNVDGIKTGHTESAGYNLV 254

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            S       +++ V+G  + + R+ ++ +L+T   
Sbjct: 255 ASATEGQMRLISAVLGGHSMKGRENESRKLMTWGF 289


>gi|114328315|ref|YP_745472.1| D-alanyl-D-alanine serine-type carboxypeptidase [Granulibacter
           bethesdensis CGDNIH1]
 gi|114316489|gb|ABI62549.1| D-alanyl-D-alanine serine-type carboxypeptidase [Granulibacter
           bethesdensis CGDNIH1]
          Length = 456

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 108/265 (40%), Positives = 163/265 (61%), Gaps = 4/265 (1%)

Query: 36  FLSIIMISMASELHAK---PKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFE 91
           FL+      ++  +A+    +YSSIV+D N   +      DE R+PASLTKMMTLY++FE
Sbjct: 67  FLTTAATGFSTTAYAQIGSERYSSIVVDANTGAVLSASSPDELRHPASLTKMMTLYMLFE 126

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            L+ +++ L+  +PVS  AA+ +PSKL L   T  T E+ IL L+T+SAND + A GE +
Sbjct: 127 ALRDRRVSLDDLVPVSGHAASMSPSKLGLVPGTRLTVEEAILGLVTKSANDAAAAVGEML 186

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            GSE++FA +M+ +A+ +GM  T+++NASGL D +QI+TA D A+L   L  +FP  Y+Y
Sbjct: 187 GGSEEQFAQMMTIRARALGMTRTVFRNASGLPDPDQISTAHDMAVLARHLILDFPSEYRY 246

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           FS   F +   +I NH+++L+     DG+KTGYT  SG N+VTS    D  ++ VV G  
Sbjct: 247 FSTPSFVFHRHVIPNHDRMLSIYPGADGLKTGYTNASGLNLVTSALRSDVRLIGVVFGAS 306

Query: 272 TSQERDQKALELITSFLEKKTLKHQ 296
              ERD     L+ +   ++ ++  
Sbjct: 307 NKYERDSHMAALLNAGFRQEGVQSD 331


>gi|254516725|ref|ZP_05128784.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [gamma proteobacterium NOR5-3]
 gi|219675148|gb|EED31515.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [gamma proteobacterium NOR5-3]
          Length = 379

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 77/239 (32%), Positives = 131/239 (54%), Gaps = 6/239 (2%)

Query: 56  SIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
            +++D N   +      DE   PASLTK+MT +++   + + +L  + Q+ VS+ A +QN
Sbjct: 27  YLLVDANSGAVLVESNADEQLPPASLTKLMTAFVLASEIDAGRLSRDDQVTVSRNAWSQN 86

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           P     S ++++ +   T  Q    ++  S ND + A  E I+GSE  FA LM+  A ++
Sbjct: 87  PVFNGSSLMWIEPRMPVTIGQLEQGIVISSGNDATVAVAEHIAGSETAFADLMNKHAAEL 146

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM  + + N+ GL     + TARD A L   +   FP++YK +S R++ Y +    N NK
Sbjct: 147 GMHGSYFANSHGLPHPQHLMTARDLATLAKAIITRFPEHYKVYSQREYTYNDIRQYNRNK 206

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           LL +  ++DG+KTGYTR +G+ +V S       +++VVMG  +++ R ++   L+    
Sbjct: 207 LLGEDPSVDGLKTGYTREAGYGLVASAERNGMRLISVVMGTESTRARARETRSLLNYGF 265


>gi|229061749|ref|ZP_04199082.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH603]
 gi|229168820|ref|ZP_04296539.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH621]
 gi|228614668|gb|EEK71774.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH621]
 gi|228717495|gb|EEL69159.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH603]
          Length = 385

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 88/298 (29%), Positives = 153/298 (51%), Gaps = 21/298 (7%)

Query: 34  ILFLSIIMISMA-------------SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           +L LS   +S A             +   A+   S+IVI+ +  ++   K  +E   PAS
Sbjct: 1   MLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFDKNPNEKLPPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MT+ +I E ++  KL L  ++  S+ AA+   S+++L+     T  + +  +   S
Sbjct: 61  MTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTVNEMLKGIAIAS 120

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND S A  E I+GSE+ F  +M+ KAK +G++NT ++N +GL  K+  +TA D AI+  
Sbjct: 121 GNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMAR 180

Query: 200 LLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
            L K +P   KY       +R+   +   + N NKL+     +DG+KTG+T  + + +  
Sbjct: 181 ELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTA 239

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           S       +++VVMG PTS+ER+ +  +L+     +   K   T R + + +  + K 
Sbjct: 240 SAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYT-RGEKIKTVQVGKG 296


>gi|323499952|ref|ZP_08104910.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sinaloensis DSM 21326]
 gi|323314969|gb|EGA68022.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sinaloensis DSM 21326]
          Length = 392

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 86/254 (33%), Positives = 139/254 (54%), Gaps = 8/254 (3%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           I++  A ++ AK     +++D +  ++   K+ +    PASLTKMMT Y+I + L+   +
Sbjct: 30  IVVPDAPQIAAK---GYVLLDYHSGKVLAQKEMNTKLSPASLTKMMTSYVIGQELERGNI 86

Query: 99  HLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
            L   + +SK A  +N    SK++++  T    E     +I +S ND   A  E I+GSE
Sbjct: 87  SLQDDVTISKNAWAKNFPDSSKMFIEVGTTVKVEDLNRGIIIQSGNDACVAMAEHIAGSE 146

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             F  LM+  A  IGM++T + N  GL + N  +T  D A+LG  L ++ P  Y+ +S +
Sbjct: 147 DAFVDLMNAWANTIGMKDTHFANVHGLDNPNLYSTPYDMALLGSALIRDVPDEYRIYSDK 206

Query: 216 KFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           KF Y      N N LL  K  N+DGIKTG+T N+G+++V+S       +VAVVMG  ++ 
Sbjct: 207 KFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLVAVVMGTKSAN 266

Query: 275 ERDQKALELITSFL 288
            R  ++ +L++   
Sbjct: 267 ARKSESKKLLSYGF 280


>gi|170740496|ref|YP_001769151.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp.
           4-46]
 gi|168194770|gb|ACA16717.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp.
           4-46]
          Length = 503

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 122/320 (38%), Positives = 184/320 (57%), Gaps = 15/320 (4%)

Query: 31  MGKILFLSIIMISMASELHA-------------KPKYSSIVIDVNKNQMTGF-KQDEPRY 76
           +  ++  + ++ +M     A              P ++++V+DV   ++     +D  R+
Sbjct: 12  LPALIAAAAVLTAMTHPADARRRGHHHGGGGGYNPPFAAMVVDVKSGRVLHAVNEDALRH 71

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MTLY++FE L+  K+ L+T + +S  AA Q PSKL L+  +  T E+ I AL+
Sbjct: 72  PASITKVMTLYLLFEQLERGKMSLDTPLEISANAARQAPSKLGLRPGSTITVEEAIKALV 131

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
           T+SANDV+ A GE I+GSE  FA +M+ KA  +GM  T Y NASGL D +QITTARD  +
Sbjct: 132 TKSANDVACAIGENIAGSEGAFAEMMTRKAHALGMSRTHYANASGLPDSDQITTARDLTV 191

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   ++  FP+YY+YF  R F +R R+I NHN LL ++  +DGIKTGYTR+SGFN++TS 
Sbjct: 192 LARAIQDRFPRYYRYFQTRSFAFRGRVIGNHNHLLGRVEGVDGIKTGYTRDSGFNLMTSA 251

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIK 316
           R  D  IVAVV+G  +   RD     L+   L K     + T     L+  S + +++ +
Sbjct: 252 RLADRHIVAVVLGGKSVASRDAIMTRLVQGNLPKAYAGARTTPPVTELAERS-RPAVVAE 310

Query: 317 KLKRTYSQFKKIDAKAHSTQ 336
           +   T +     D      +
Sbjct: 311 RSATTRTLVAAADDDDEGVE 330


>gi|332091585|gb|EGI96666.1| D-alanyl-D-alanine carboxypeptidase dacD [Shigella dysenteriae
           155-74]
          Length = 301

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           ++R + +   +   ++        I  + +       S +++D    Q+     + + R 
Sbjct: 1   MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +   
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               LI  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D A+L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           FN++ S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 241 FNLIASGVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 283


>gi|315180861|gb|ADT87775.1| D-alanyl-D-alanine carboxypeptidase [Vibrio furnissii NCTC 11218]
          Length = 391

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 86/258 (33%), Positives = 135/258 (52%), Gaps = 8/258 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
             S ++I  A ++ AK     ++ID +  ++   K+      PASLTKMMT Y+I + L+
Sbjct: 25  LASPVVIPDAPQIAAK---GFVLIDYHSGKVLAEKEMHTKLSPASLTKMMTSYVIGQELK 81

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              +  +  + +S+ A  +N    SK++++  T          +I +S ND   A  E I
Sbjct: 82  RGNITNDDDVTISRNAWAKNFPDSSKMFIEVGTTVKVRDLNQGIIVQSGNDACVAMAEHI 141

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  F  LM+  A  +GMQ T + N  GL D N  +T  D A+LG  L ++ P  YK 
Sbjct: 142 AGSEDAFVDLMNAWADTLGMQETHFANVHGLDDPNLYSTPYDMALLGQALIRDVPDEYKI 201

Query: 212 FSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL  K  N+DGIKTG+T N+G+++V+S       ++AVVMG 
Sbjct: 202 YSQQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLIAVVMGT 261

Query: 271 PTSQERDQKALELITSFL 288
                R  ++ +L++   
Sbjct: 262 KDMNARKSESKKLLSYGF 279


>gi|283832568|ref|ZP_06352309.1| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC
           29220]
 gi|291072237|gb|EFE10346.1| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC
           29220]
          Length = 390

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 73/283 (25%), Positives = 139/283 (49%), Gaps = 14/283 (4%)

Query: 22  IYIQRNIQLMGKILFLSII------MISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEP 74
           + ++R + +   +  +S        + S A +  A    + +++D    Q+     + + 
Sbjct: 1   MLLKRRLFIAASLFAMSFSPAWATNVASFAPQPPAINAGAWVLMDYTTGQILTAGNEHQQ 60

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTT 128
           R PASLTK+MT Y++   + SK++     + V + A  +        S ++LK+    + 
Sbjct: 61  RNPASLTKLMTGYVVDRAIDSKRISPTDIVTVGRDAWAKDNPVFVGSSLMFLKQGDRVSV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
                 LI  S ND   A  ++I+G + +F  +M+N A+K+ +Q+T ++   GL    Q 
Sbjct: 121 RDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNNYAQKLNLQDTHFETVHGLDAPGQH 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRN 247
           ++A D A+L   +    P +Y  +S +   +      N N LL  K  N+DG+KTG+T  
Sbjct: 181 SSAYDLAVLSRAIIHGEPDFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSG 240

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +GFN++ S       ++AVVMG  +++ R+ +A +L+    + 
Sbjct: 241 AGFNLIASAVDGQRRLIAVVMGAESAKGREDQARKLLQWGQQN 283


>gi|312171708|emb|CBX79966.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Erwinia amylovora
           ATCC BAA-2158]
          Length = 411

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 83/276 (30%), Positives = 147/276 (53%), Gaps = 18/276 (6%)

Query: 31  MGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQ-DEPRYPASL 80
            G ++ LS+ +++ A +++ K            + I+ID N  ++   K  D  R PASL
Sbjct: 22  AGMLIALSLNVVAYADDVNIKTMIPGVPEIDAEAYILIDYNSGKVLAEKNADARRDPASL 81

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILA 134
           TKMMT Y+I + +++ K+H +  + V K A        +  S ++LK        Q    
Sbjct: 82  TKMMTSYVIGQAIKAGKIHQDDMVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVSQLTRG 141

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           ++ +S ND   A  ++++GS+  F  LM+N  K +G+QNT ++   GL  + Q ++ARD 
Sbjct: 142 IVLQSGNDACVAMADYVAGSQDTFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYSSARDM 201

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIV 253
           A++G  L ++ P  Y  +  ++F + N    N N LL   + N+DGIKTG+T ++G+N+V
Sbjct: 202 ALIGRALIRDVPDEYAVYHEKEFTFNNIRQMNRNGLLWDTNLNVDGIKTGHTESAGYNLV 261

Query: 254 TSLRYK-DDPIVAVVMGMPTSQERDQKALELITSFL 288
            S        +++ VMG  T + R+ ++ +L+T   
Sbjct: 262 ASATEGQQMRLISTVMGGHTYKGRETESKKLLTWGF 297


>gi|296116795|ref|ZP_06835401.1| D-alanyl-D-alanine carboxypeptidase [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976596|gb|EFG83368.1| D-alanyl-D-alanine carboxypeptidase [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 402

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 100/275 (36%), Positives = 166/275 (60%), Gaps = 7/275 (2%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISM---ASELHAK--PKYSSIVIDVNKNQMTG-FKQDEP 74
            ++  R  ++   +L    ++  +   A +  A+   + SSIV+D     +      D  
Sbjct: 23  RLFTARGTRVKVSLLVAGGLVAGLFGGAGQARAQYVGQISSIVMDARTGTVLSQSNADLR 82

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           R+PASLTK+MTLY+ F+ L++ ++ L+  +PVS  AA+  PSKL L+  +Y T E+ ILA
Sbjct: 83  RFPASLTKLMTLYLTFKALRAGRITLDQVVPVSAHAASMEPSKLGLRPGSYLTVEEAILA 142

Query: 135 LITRSANDVSTAFGEFI-SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           L+T+SAND + A GEF+ +GSE  FA +M+ +A ++ M +T ++NASGL ++ Q+T+ARD
Sbjct: 143 LVTKSANDAACALGEFLGAGSESTFAQIMTQQAARLSMNDTSFRNASGLPNEEQMTSARD 202

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            A L   +  +F +YY YF++  F +R R + NH+ +L      DG+KTGYT  +G N+V
Sbjct: 203 LATLARHIALDFGEYYHYFAVPAFYFRGRYVPNHDPMLKSYPGADGLKTGYTAVAGHNLV 262

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           TS    +  ++ VV+G P+++ R+    +L+    
Sbjct: 263 TSAVRDNVRLIGVVLGAPSNETRNAVMADLLDDSF 297


>gi|260459198|ref|ZP_05807453.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium
           opportunistum WSM2075]
 gi|259034752|gb|EEW36008.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium
           opportunistum WSM2075]
          Length = 482

 Score =  291 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 121/309 (39%), Positives = 180/309 (58%), Gaps = 4/309 (1%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLY 87
            +M   L L+ +   +AS L A+   ++IV+D    ++         RYPASLTKMMTLY
Sbjct: 18  AIMVFALALTFVCADVASSLAAR--QAAIVVDAKTGKVLYSADANGRRYPASLTKMMTLY 75

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + FE L   K+  NT +  S  A+ + P+KL +K     T +  IL+++T+SAND +TA 
Sbjct: 76  LTFEALAKGKISRNTPVVFSAKASAEAPTKLGVKPGGSVTVDTAILSIVTKSANDSATAL 135

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
           GE I G+E  FA +M+ KA+++GM  T+++NA+GL D  Q TTARD A LGI LR++FPQ
Sbjct: 136 GEMIGGNETNFARMMTAKARQLGMNGTVFRNANGLPDPGQFTTARDMATLGIALREHFPQ 195

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           YY YFS R F Y  + I  HN+LL ++  +DGIKTGYTR SGFN+V+S+   +  +VAVV
Sbjct: 196 YYGYFSQRSFLYGRQRINGHNRLLGRIKGVDGIKTGYTRASGFNLVSSVSDGNRRLVAVV 255

Query: 268 MGMPTSQERDQKALELITSFLEKKTLK-HQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
           MG  +   RD +   LI ++L + + +       K + +       +++ K        K
Sbjct: 256 MGGTSGGSRDNQMAALINTYLPRASTRGGGDLVAKADSNPIRALAKVLLPKHDAPTPDEK 315

Query: 327 KIDAKAHST 335
            +   +  T
Sbjct: 316 PVAVASDDT 324


>gi|21241435|ref|NP_641017.1| penicillin-binding protein 6 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21106773|gb|AAM35553.1| penicillin-binding protein 6 [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 401

 Score =  291 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 75/250 (30%), Positives = 135/250 (54%), Gaps = 9/250 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S I++D    Q+   +   +   PAS+TK+MT Y++   +++ K+  + Q+ +S+ A  +
Sbjct: 51  SWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWRE 110

Query: 114 N-----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                  S            E     +  +S ND + A  E ++GSE+ FA LM++ A K
Sbjct: 111 GGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAK 170

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           IGM+++ + NA GL  +   +TA D A+LG  + +++P+ Y Y  I++F+      +N N
Sbjct: 171 IGMKDSYFVNAHGLSAEGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGTIKQSNRN 230

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS-- 286
           +LL +   +DGIKTG+T  +G+ +++S +  D  ++AVVMG  + ++R   +L L+    
Sbjct: 231 RLLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNWGF 290

Query: 287 -FLEKKTLKH 295
            F E  +L  
Sbjct: 291 RFFETHSLYA 300


>gi|78046281|ref|YP_362456.1| D-alanyl-D-alanine carboxypeptidase precursor [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|289667540|ref|ZP_06488615.1| D-alanyl-D-alanine carboxypeptidase precursor [Xanthomonas
           campestris pv. musacearum NCPPB4381]
 gi|78034711|emb|CAJ22356.1| D-alanyl-D-alanine carboxypeptidase precursor [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 401

 Score =  291 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 75/250 (30%), Positives = 135/250 (54%), Gaps = 9/250 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S I++D    Q+   +   +   PAS+TK+MT Y++   +++ K+  + Q+ +S+ A  +
Sbjct: 51  SWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWRE 110

Query: 114 N-----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                  S            E     +  +S ND + A  E ++GSE+ FA LM++ A K
Sbjct: 111 GGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAK 170

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           IGM+++ + NA GL  +   +TA D A+LG  + +++P+ Y Y  I++F+      +N N
Sbjct: 171 IGMKDSYFVNAHGLSAEGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGTIKQSNRN 230

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS-- 286
           +LL +   +DGIKTG+T  +G+ +++S +  D  ++AVVMG  + ++R   +L L+    
Sbjct: 231 RLLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNWGF 290

Query: 287 -FLEKKTLKH 295
            F E  +L  
Sbjct: 291 RFFETHSLYA 300


>gi|290473971|ref|YP_003466845.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
           [Xenorhabdus bovienii SS-2004]
 gi|289173278|emb|CBJ80053.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
           [Xenorhabdus bovienii SS-2004]
          Length = 401

 Score =  291 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 77/280 (27%), Positives = 143/280 (51%), Gaps = 16/280 (5%)

Query: 25  QRNIQLMGKI-----LFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGFKQ-DEPR 75
           +R +Q++        +F  + + + A +  A P     S I++D    ++      DE  
Sbjct: 4   RRQVQIIKSFTVGLGIFWLMGVNTYAMDEPAAPEIDAKSYILMDYASGKILASHNPDERL 63

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTE 129
            PASLTK+MT Y++ + ++S K+    Q+ V K A        +  S ++LK        
Sbjct: 64  DPASLTKVMTSYVVGQSIKSGKISTEDQVTVGKDAWATGNPALKGSSLMFLKPGDRVKVI 123

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
                ++ +S ND S A  ++++GS+  F  LM+  +K +G++NT +K   GL    Q +
Sbjct: 124 DLNRGIVIQSGNDASIALADYVAGSQDAFVDLMNKYSKTLGLENTHFKTVHGLDAAGQYS 183

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNS 248
           TARD A+L   + ++ P+ Y     ++F + N    N N+LL  +  N+DG+KTG+T  +
Sbjct: 184 TARDMALLSQAMIRDVPEEYALNKEKEFTFNNIRQPNRNRLLWNQNMNVDGVKTGHTSGA 243

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           G+N+V S       +++VV+G P+ + R   + ++++   
Sbjct: 244 GYNLVASAAEGSMRLISVVLGAPSDRMRFSDSEKILSWGF 283


>gi|292487601|ref|YP_003530473.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Erwinia amylovora
           CFBP1430]
 gi|291553020|emb|CBA20065.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Erwinia amylovora
           CFBP1430]
          Length = 411

 Score =  291 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 83/276 (30%), Positives = 148/276 (53%), Gaps = 18/276 (6%)

Query: 31  MGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQ-DEPRYPASL 80
            G ++ LS+ +++ A +++ K            + I+ID N  ++   K  D  R PASL
Sbjct: 22  AGMLIALSLNVVAYADDVNIKTMIPGVPEIDAEAYILIDYNSGKVLAEKNADARRDPASL 81

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILA 134
           TKMMT Y+I + +++ K+H + ++ V K A        +  S ++LK        Q    
Sbjct: 82  TKMMTSYVIGQAIKAGKIHQDDRVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVSQLTRG 141

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           ++ +S ND   A  ++++GS+  F  LM+N  K +G+QNT ++   GL  + Q ++ARD 
Sbjct: 142 IVLQSGNDACVAMADYVAGSQDTFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYSSARDM 201

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIV 253
           A++G  L ++ P  Y  +  ++F + N    N N LL   + N+DGIKTG+T ++G+N+V
Sbjct: 202 ALIGRALIRDVPDEYAVYHEKEFTFNNIRQMNRNGLLWDTNLNVDGIKTGHTESAGYNLV 261

Query: 254 TSLRYK-DDPIVAVVMGMPTSQERDQKALELITSFL 288
            S        +++ VMG  T + R+ ++ +L+T   
Sbjct: 262 ASATEGQQMRLISTVMGGHTYKGRETESKKLLTWGF 297


>gi|228902586|ref|ZP_04066737.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis IBL 4222]
 gi|228857027|gb|EEN01536.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis IBL 4222]
          Length = 385

 Score =  291 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 83/269 (30%), Positives = 146/269 (54%), Gaps = 8/269 (2%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 30  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 90  HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRI 223
           +G++NT ++N +GL  K+  +TA D AI+   L K +P   KY       +R+   +   
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFW 208

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           + N NKL+     +DG+KTG+T  + + +  S +     +++VVMG PTS+ER+ +  +L
Sbjct: 209 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAQKNGMRVISVVMGAPTSKERNNEVTKL 268

Query: 284 ITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           +     +   K   T R + + +  + K 
Sbjct: 269 LDYAFGQYMTKKLYT-RGEKIKTVQVGKG 296


>gi|311280276|ref|YP_003942507.1| Beta-lactamase [Enterobacter cloacae SCF1]
 gi|308749471|gb|ADO49223.1| Beta-lactamase [Enterobacter cloacae SCF1]
          Length = 402

 Score =  291 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 75/253 (29%), Positives = 131/253 (51%), Gaps = 11/253 (4%)

Query: 47  ELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           ++ A P     + I++D    ++      DE   PASLTK+MT Y++ + L++ K+ L  
Sbjct: 32  QMPAPPPVDAKAWILMDYASGKVLSEGSADEKLDPASLTKIMTSYVVGQALKAGKIKLTD 91

Query: 103 QIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
            + + + A        +  S ++LK     + E     +I +S ND S A  ++++GS+ 
Sbjct: 92  SVTIGRDAWATGNPALRGSSVMFLKPGDQVSVEDLNKGVIIQSGNDASIAIADYVAGSQD 151

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F  LM++ A+K+G+ NT ++   GL    Q +TARD A+L   +  + P  Y     ++
Sbjct: 152 SFVGLMNSYAQKLGLTNTTFQTVHGLDAPGQFSTARDMALLTRAMIHDVPDEYAIHKEKE 211

Query: 217 FRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           F +      N N+LL     N DG+KTG T  +G+N+V+S    D  ++AVV+G  T + 
Sbjct: 212 FTFNKIRQPNRNRLLWNASLNADGVKTGTTAGAGYNLVSSAIQGDMRLIAVVLGTKTDRI 271

Query: 276 RDQKALELITSFL 288
           R  ++ +L+T   
Sbjct: 272 RFNESEKLLTWGF 284


>gi|315181925|gb|ADT88838.1| D-alanyl-D-alanine carboxypeptidase [Vibrio furnissii NCTC 11218]
          Length = 390

 Score =  291 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 77/266 (28%), Positives = 136/266 (51%), Gaps = 8/266 (3%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           + L+    F + I++    +L AK     +++D N  Q+      +E   PASLTK+MT 
Sbjct: 15  MSLLSATSFAAPIVVPNPPQLSAK---GYVLMDYNTGQVLVEHNANEKMNPASLTKLMTS 71

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDV 143
           Y+  + ++   +    Q+ +S+ A  +N    SK++++  T          LI +S ND 
Sbjct: 72  YVAGQEMKRGNIKPTDQVTISQKAWAKNFPDSSKMFIEVGTSVNMMDLYRGLIVQSGNDA 131

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           S A  E ++GSE  F  LM++ A+++G+ NT + N  GL      TT  D A L   + +
Sbjct: 132 SVAIAEHVAGSENAFVDLMNSWAQRLGLNNTAFTNPHGLDSDGLYTTPYDIAKLAQAIIR 191

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           + P+ Y  +S   F Y      N N LL  +  N+DG+KTG+T  +G+++VTS    +  
Sbjct: 192 DLPEIYPIYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGFTSGAGYSLVTSATNGNMR 251

Query: 263 IVAVVMGMPTSQERDQKALELITSFL 288
           +++ VMG  + + R+  + +L++   
Sbjct: 252 LISAVMGANSMKSRESDSKQLLSYGF 277


>gi|53724944|ref|YP_101907.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei ATCC 23344]
 gi|52428367|gb|AAU48960.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei ATCC 23344]
          Length = 403

 Score =  291 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 85/310 (27%), Positives = 154/310 (49%), Gaps = 21/310 (6%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  A         S +++D + NQ+      DE   PASLTK+MT Y++FE L +KK+ +
Sbjct: 35  VPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 94

Query: 101 NTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
              +  S+      ++ S+++++     +    +  +I +S ND + A  E + GSE +F
Sbjct: 95  EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 154

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+ +A+++GM++T + + +G+ D N  TTA D A L   L +++P YY  FS+++F 
Sbjct: 155 VNMMNAEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFT 214

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMP 271
           Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +            +V V+MG  
Sbjct: 215 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGET 274

Query: 272 TSQERDQKALELI----TSFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKKLKR 320
              +R Q +++++    T+F   +  K  Q          K N     +KK   I   + 
Sbjct: 275 KESDRVQDSMKMLNYGYTAFDSVRLYKAGQPIGTPRVYKGKSNNVQVGVKKDQFITVPRG 334

Query: 321 TYSQFKKIDA 330
              + K   A
Sbjct: 335 LADKVKPEVA 344


>gi|53718048|ref|YP_107034.1| penicillin-binding protein 6 [Burkholderia pseudomallei K96243]
 gi|52208462|emb|CAH34396.1| penicillin-binding protein 6 [Burkholderia pseudomallei K96243]
          Length = 403

 Score =  291 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 154/310 (49%), Gaps = 21/310 (6%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  A         S +++D + NQ+      DE   PASLTK+MT Y++FE L +KK+ +
Sbjct: 35  VPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 94

Query: 101 NTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
              +  S+      ++ S+++++     +    +  +I +S ND + A  E + GSE +F
Sbjct: 95  EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 154

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+ +A+++GM+NT + + +G+ D N  TTA D A L   L +++P YY  FS+++F 
Sbjct: 155 VNMMNAEAQRLGMKNTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFT 214

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMP 271
           Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +            +V V+MG  
Sbjct: 215 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGET 274

Query: 272 TSQERDQKALELI----TSFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKKLKR 320
              +R Q +++++    T+F   +  K  Q          K N     +KK   I   + 
Sbjct: 275 KESDRVQDSMKMLNYGYTAFDSVRLYKASQPIDTPRVYKGKSNNVQVGVKKDQFITVPRG 334

Query: 321 TYSQFKKIDA 330
              + K   A
Sbjct: 335 LADKVKPEVA 344


>gi|311107988|ref|YP_003980841.1| D-alanyl-D-alanine carboxypeptidase [Achromobacter xylosoxidans A8]
 gi|310762677|gb|ADP18126.1| D-alanyl-D-alanine carboxypeptidase DacC 1 [Achromobacter
           xylosoxidans A8]
          Length = 386

 Score =  291 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 75/272 (27%), Positives = 138/272 (50%), Gaps = 11/272 (4%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPR-YPASLTKMM 84
           +L   ++  +  M    ++    P  S+   +++D    Q+        R  PASLTK+M
Sbjct: 5   KLAASLIVAAACMSGAMAQTVPAPALSAKAWLLLDETSGQVIASHAATTRIEPASLTKIM 64

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGILALITRSAND 142
           T Y++FE L  K+L     + VS  A       SK++L+  +  + +  +  L+ +S ND
Sbjct: 65  TAYVVFEALSKKELSATQLVTVSTRAWKVPAGSSKMFLEPGSKVSVDDLLRGLMIQSGND 124

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E +SGS + F   M++ A ++G+  T + +  GL D    +TA D +IL     
Sbjct: 125 AAIALAEAVSGSVEAFVARMNDTAARLGLHATRFASPHGLPDPETYSTASDLSILATRFI 184

Query: 203 KNFPQYYKYF-SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY--- 258
           +++PQ YK + S ++F +      N N+LL    ++DG+KTG+T ++G+ IV + +    
Sbjct: 185 RDYPQLYKTYDSAKQFTFNKITQPNRNRLLWLDPSVDGLKTGHTESAGYCIVATAQRPNG 244

Query: 259 -KDDPIVAVVMGMPTSQERDQKALELITSFLE 289
                ++ VV+G  + + R Q++ EL+    +
Sbjct: 245 ADQRRLITVVVGTASDKLRTQESRELLEWGFQ 276


>gi|295695956|ref|YP_003589194.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM
           2912]
 gi|295411558|gb|ADG06050.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM
           2912]
          Length = 425

 Score =  291 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 75/259 (28%), Positives = 141/259 (54%), Gaps = 7/259 (2%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           +  S   A+   S++++D     +   K   E   PAS+TK+MT+ +  E L+  ++ L+
Sbjct: 62  AETSPKLAEHAVSAVLMDAATGTVLMEKNSHEKLPPASITKIMTMLLTVEALERGQVQLS 121

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
            ++  S+ AA+   S+++L+     T +  +  +   SAND S A  E+++GSE +F  L
Sbjct: 122 DRVRTSERAASMGGSQIFLEPGEEMTLDDMMKGIAVASANDASVAVAEYLAGSEAEFVSL 181

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRK 216
           M+ +A+++GM++T + N +GL  +   T+A D AI+   L K  PQ  ++ S     +RK
Sbjct: 182 MNRRAEELGMRDTHFVNCNGLPAEGHYTSAYDIAIMSRELLK-HPQVLRWTSLYEDYLRK 240

Query: 217 FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
              R   + N NKL+     +DG+KTG+T ++ + +  + +  D  ++AVVMG PTS++R
Sbjct: 241 NTDRPFWLVNTNKLVRFYPGVDGLKTGFTESARYCLSATAKKGDFRVIAVVMGEPTSKQR 300

Query: 277 DQKALELITSFLEKKTLKH 295
           + +  +++     +     
Sbjct: 301 NAEVTQMLDWAFGQYQFVK 319


>gi|283785832|ref|YP_003365697.1| penicillin-binding protein 6B [Citrobacter rodentium ICC168]
 gi|282949286|emb|CBG88897.1| penicillin-binding protein 6B [Citrobacter rodentium ICC168]
          Length = 390

 Score =  291 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 70/282 (24%), Positives = 138/282 (48%), Gaps = 12/282 (4%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  A +  A    S +++D    Q+     + + R PASLTK+MT Y++   + S ++  
Sbjct: 27  VDFAPQPPAIEAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISP 86

Query: 101 NTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
           +  + V + A  +        S ++LK+    +       LI  S ND   A  ++++G 
Sbjct: 87  DDIVTVGRDAWAKDNPVFVGSSLMFLKQGDRVSVRDLSRGLIVDSGNDACVALADYVAGG 146

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           + +F  +M+N  KK+ +Q+T ++   GL    Q ++A D A+L   +    P++Y  +S 
Sbjct: 147 QPQFVAMMNNYVKKLHLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSE 206

Query: 215 RKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           +   +      N N LL  K  N+DG+KTG+T  +GFN++ S       ++AV+MG  + 
Sbjct: 207 KSLTWNGITQYNRNGLLWDKSLNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVIMGAQSP 266

Query: 274 QERDQKALELITSFLEK----KTLKHQQTHRKDNLSSTSLKK 311
           + R+++A +L+    +     + L++ +    + +     +K
Sbjct: 267 KGREEQARKLLHWGQQNFDTVQILRNGKQVGTERIWYGDKEK 308


>gi|294637039|ref|ZP_06715354.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC
           23685]
 gi|291089736|gb|EFE22297.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC
           23685]
          Length = 399

 Score =  291 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 72/263 (27%), Positives = 134/263 (50%), Gaps = 11/263 (4%)

Query: 37  LSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEY 92
           L+++ + + +   A P     + I++D +  ++      D+   PASLTK+M  Y+I + 
Sbjct: 19  LTLVALPLLAAEPAPPQINAKAYILLDYDSGRVLTEGNADQRLDPASLTKIMASYVIGQA 78

Query: 93  LQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           L+S K+     + V K A        +  S ++LK        +    ++ +S ND S A
Sbjct: 79  LKSGKIAPGDMVVVGKDAWATGNPVLRGSSLMFLKPGDRVPVSELNRGVVIQSGNDASIA 138

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             + ++GS+  F  LM+   +  G++NT ++   GL    Q ++ARD A++   L  + P
Sbjct: 139 LADHVAGSQDAFVNLMNKYVESWGLKNTHFRTVHGLDSAGQYSSARDMALISQHLIADVP 198

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
             Y+    ++F + N   TN N+LL     N+DG+KTG+T  +G N+V S       +++
Sbjct: 199 DEYQLNKEKEFTFNNIRQTNRNRLLWDTSLNVDGVKTGFTNGAGHNLVASATDGPMRLIS 258

Query: 266 VVMGMPTSQERDQKALELITSFL 288
           VV+G P+ + R +++ +L+T   
Sbjct: 259 VVLGAPSDRVRFEESKKLLTWGF 281


>gi|88860565|ref|ZP_01135203.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Pseudoalteromonas tunicata D2]
 gi|88817763|gb|EAR27580.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Pseudoalteromonas tunicata D2]
          Length = 387

 Score =  291 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 86/266 (32%), Positives = 140/266 (52%), Gaps = 8/266 (3%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           +  ++    I  + A  + A P+ ++    ++D    ++      DE   PASLTKMMT 
Sbjct: 12  VCGLVCTVGIFSASAQIMPAPPQVNAKGYFLVDFTTGKVIAEGAPDERLAPASLTKMMTS 71

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDV 143
           Y+I   +++K +  N  + VS+ A ++N    SK++++     + E+    +I +S ND 
Sbjct: 72  YVIGLEIKNKNISPNDLVTVSEKAWSKNFPDSSKMFIEVGKKISVEELNRGIIIQSGNDA 131

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
             A  E I+GSE  FA LM+  A+K+GM NT + N+ GL      TT RD A LG  L +
Sbjct: 132 CVAMAEHIAGSESAFADLMNAHAEKLGMTNTHFINSHGLDTDEHFTTPRDMATLGGALIR 191

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           + P  Y  +S + F +      N N LL     ++DGIKTG+T  +G+++VTS    D  
Sbjct: 192 DVPDEYAIYSEKSFTFNGIKQYNRNSLLWDESLDVDGIKTGHTSEAGYSLVTSATKGDMR 251

Query: 263 IVAVVMGMPTSQERDQKALELITSFL 288
           +VAVVMG  + + R  ++ +L+    
Sbjct: 252 LVAVVMGTESDRARRAESKKLLNYGF 277


>gi|229075784|ref|ZP_04208761.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock4-18]
 gi|229098546|ref|ZP_04229487.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock3-29]
 gi|229117572|ref|ZP_04246944.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock1-3]
 gi|228665892|gb|EEL21362.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock1-3]
 gi|228684868|gb|EEL38805.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock3-29]
 gi|228707336|gb|EEL59532.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock4-18]
          Length = 385

 Score =  291 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 89/298 (29%), Positives = 154/298 (51%), Gaps = 21/298 (7%)

Query: 34  ILFLSIIMISMA-------------SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           +L LS   +S A             +   A+   S+IVI+ +  ++   K  +E   PAS
Sbjct: 1   MLLLSGTSVSFAQSEKTKQEKTEETAPKLAEQASSAIVIEQDTGKVLFDKNPNEKLPPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MT+ +I E ++  KL LN ++  S+ AA+   S+++L+     T  + +  +   S
Sbjct: 61  MTKIMTMLLIMEQVEKGKLKLNDKVRASEHAASMGGSQIFLEPGEEMTVNEMLKGIAIAS 120

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND S A  E I+GSE+ F  +M+ KAK +G++NT ++N +GL  K+  +TA D AI+  
Sbjct: 121 GNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMAR 180

Query: 200 LLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
            L K +P   KY       +R+   +   + N NKL+     +DG+KTG+T  + + +  
Sbjct: 181 ELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTA 239

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           S       +++VVMG PTS+ER+ +  +L+     +   K   T R + + +  + K 
Sbjct: 240 SAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKMYT-RGEKIKTVQVGKG 296


>gi|117924769|ref|YP_865386.1| penicillin-binding protein 6 [Magnetococcus sp. MC-1]
 gi|117608525|gb|ABK43980.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Magnetococcus sp. MC-1]
          Length = 386

 Score =  291 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 81/268 (30%), Positives = 141/268 (52%), Gaps = 7/268 (2%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKP------KYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           + +L+   +   ++ I   S+  A+         ++I+ D++   +   +  D P  PAS
Sbjct: 8   SFKLLRNTMLALMVTILAGSQAWAEGLPFHVRAKAAIMGDIDSGAILFDQNSDMPLPPAS 67

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LTK+MTLY+++E LQ   + L T +PVS+ A  +  SK ++K       E  I  +  +S
Sbjct: 68  LTKVMTLYLLYEALQKGDITLETSMPVSRNAWQREGSKTFVKVGDKIRVEDLIRGIAVQS 127

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND      E++ GSEK FA +M+ KA  +GM+ + + NASGL      ++ARD  IL  
Sbjct: 128 GNDACVVVAEYLGGSEKGFADMMNAKAAALGMEASHFANASGLPAPGHQSSARDFFILTA 187

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            L K+FP+Y  Y   +++ +      N N LL K   I G+KTG+T  +G+ ++      
Sbjct: 188 ALMKHFPEYAHYVQQKEYTFNGIRQVNRNHLLWKDKYITGLKTGHTSEAGYCLIAVREKD 247

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSF 287
              + +VVMG  +++ R+++++ L+   
Sbjct: 248 GQRLCSVVMGSSSTEVREEESMRLLHYG 275


>gi|167917341|ref|ZP_02504432.1| penicillin-binding protein 6 [Burkholderia pseudomallei BCC215]
          Length = 377

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 85/310 (27%), Positives = 154/310 (49%), Gaps = 21/310 (6%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  A         S +++D + NQ+      DE   PASLTK+MT Y++FE L +KK+ +
Sbjct: 9   VPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 68

Query: 101 NTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
              +  S+      ++ S+++++     +    +  +I +S ND + A  E + GSE +F
Sbjct: 69  EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 128

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+ +A+++GM++T + + +G+ D N  TTA D A L   L +++P YY  FS+++F 
Sbjct: 129 VNMMNAEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFT 188

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMP 271
           Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +            +V V+MG  
Sbjct: 189 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGET 248

Query: 272 TSQERDQKALELI----TSFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKKLKR 320
              +R Q +++++    T+F   +  K  Q          K N     +KK   I   + 
Sbjct: 249 KESDRVQDSMKMLNYGYTAFDSVRLYKASQPIDTPRVYKGKSNNVQVGVKKDQFITVPRG 308

Query: 321 TYSQFKKIDA 330
              + K   A
Sbjct: 309 LADKVKPEVA 318


>gi|190891891|ref|YP_001978433.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli CIAT 652]
 gi|190697170|gb|ACE91255.1| probable serine-type D-Ala-D-Ala carboxypeptidase protein
           [Rhizobium etli CIAT 652]
          Length = 524

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 118/285 (41%), Positives = 175/285 (61%), Gaps = 1/285 (0%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKM 83
            + + ++   + + ++    A    A PKY+ IV+D     +   +  +   YPASLTKM
Sbjct: 25  AKLLAILSMAVTVVLVDSVNAEAEAANPKYAGIVVDAKTGNVLYSENADRLQYPASLTKM 84

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MTLY+ FE L+  ++ L+T +P S  AA Q P+KL ++     T EQGIL L+T SAND 
Sbjct: 85  MTLYMTFEALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDA 144

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           +TA GE + GSE +FA +M+ KA  +GM  T Y+NA+GL +  Q+TTARDQA LGI LR+
Sbjct: 145 ATALGEMLGGSEDRFAQMMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQ 204

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           +FPQYY YFS R F++  R I +HN+L+  +  +DGIKTGYTR +GFN+V+S++     I
Sbjct: 205 HFPQYYGYFSTRAFKFGTRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSI 264

Query: 264 VAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
           V+VV+G  +   RD +   LI ++L K + +   +      +   
Sbjct: 265 VSVVLGGTSGPARDAQMRNLIATYLPKASSRGGSSQLIAQAAPAP 309


>gi|259909131|ref|YP_002649487.1| D-alanyl-D-alanine carboxypeptidase fraction A [Erwinia pyrifoliae
           Ep1/96]
 gi|224964753|emb|CAX56270.1| penicillin-binding protein 5 [Erwinia pyrifoliae Ep1/96]
          Length = 404

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 82/276 (29%), Positives = 147/276 (53%), Gaps = 18/276 (6%)

Query: 31  MGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQ-DEPRYPASL 80
            G ++ LS+ +++ A +++ K            + ++ID N  ++   K  D  R PASL
Sbjct: 15  AGMLIALSLNVVAYADDVNIKTMIPGVPDIDAEAYVLIDYNSGKVLAEKNADARRDPASL 74

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILA 134
           TKMMT Y+I + +++ K+H +  + V K A        +  S ++LK        Q    
Sbjct: 75  TKMMTSYVIGQAIKAGKIHQDDMVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVSQLTRG 134

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           ++ +S ND   A  ++++GS++ F  LM+N  K +G+QNT ++   GL  + Q ++ARD 
Sbjct: 135 IVLQSGNDACVAMADYVAGSQETFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYSSARDM 194

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIV 253
           A++G  L ++ P  Y  +  ++F + N    N N LL     N+DGIKTG+T ++G+N+V
Sbjct: 195 ALIGRALIRDVPDEYAVYHEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTESAGYNLV 254

Query: 254 TSLRYK-DDPIVAVVMGMPTSQERDQKALELITSFL 288
            S        +++ VMG  T + R+ ++ +L+T   
Sbjct: 255 ASATEGQQMRLISTVMGGHTYKGRETESKKLLTWGF 290


>gi|187927291|ref|YP_001897778.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia pickettii 12J]
 gi|309780010|ref|ZP_07674763.1| serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia sp. 5_7_47FAA]
 gi|187724181|gb|ACD25346.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia pickettii 12J]
 gi|308921180|gb|EFP66824.1| serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia sp. 5_7_47FAA]
          Length = 400

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 89/283 (31%), Positives = 157/283 (55%), Gaps = 15/283 (5%)

Query: 43  SMASELHAK--PKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           +MA  + A      S ++ DV   Q+ G    DE   PASLTK+MT Y++FE ++  KL 
Sbjct: 32  AMAQPVPAPQVAARSWMLTDVTSGQVLGGANMDERIEPASLTKLMTAYLVFEAVRDGKLK 91

Query: 100 LNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
            +  I  ++T      + S+++L+     +  +    LI +S ND +    E + G+E  
Sbjct: 92  YDQMITPTETVRTVKTDESRMFLEAGKPASVREMTQGLIIQSGNDAALVLAEAVGGTETN 151

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F +LM+ +A+++GM+NT + NA+GL D N  +TARD +IL   L K+FPQ YK++S ++F
Sbjct: 152 FVMLMNREAERLGMKNTHFANAAGLPDPNHYSTARDLSILTAALIKDFPQDYKFYSQKEF 211

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGM 270
            Y N   +N N+LL     +DG KTG+T+++G+ +VTS           +  +++V++G 
Sbjct: 212 TYNNIKQSNRNRLLWLDPTVDGGKTGHTKSAGYCLVTSANRPLPDVPGANRRLLSVIIGT 271

Query: 271 PTSQERDQKALELITSFLE-KKTLKHQQTHRKDNLSSTSLKKS 312
            +   R Q++L+++    +   T++  +   K+ L +  + K 
Sbjct: 272 KSDAIRTQESLKVLNYGYQFFDTVRLYKA--KEALQTPDVYKG 312


>gi|172061846|ref|YP_001809498.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria
           MC40-6]
 gi|171994363|gb|ACB65282.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria
           MC40-6]
          Length = 437

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 88/313 (28%), Positives = 152/313 (48%), Gaps = 21/313 (6%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
            +  A         S +++D   N +      DE   PASLTK+MT Y++FE L  KK+ 
Sbjct: 69  FMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKIS 128

Query: 100 LNTQIPVSKTAATQN--PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           +   I  S+         S+++++     +    +  +I +S ND + A  E + GSE +
Sbjct: 129 MEQIITPSEAVRRVGLDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQ 188

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F  LM+ +A+++GM+ T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F
Sbjct: 189 FVTLMNAEAQRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEF 248

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY------KDDPIVAVVMGMP 271
           +Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +           +V+V+MG P
Sbjct: 249 KYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEP 308

Query: 272 TSQERDQKALELIT----SFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKKLKR 320
              ER Q +++++     +F   +  K  Q          K+N     +K    +   + 
Sbjct: 309 KEGERTQDSMKMLNYGYSAFDAVRLFKGGQAMSTPRVYKGKENTVQVGVKSDQWVTVPRG 368

Query: 321 TYSQFKK-IDAKA 332
              + K  +D  A
Sbjct: 369 LGDKVKPEVDVNA 381


>gi|228998860|ref|ZP_04158445.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus mycoides Rock3-17]
 gi|228760876|gb|EEM09837.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus mycoides Rock3-17]
          Length = 386

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 80/252 (31%), Positives = 139/252 (55%), Gaps = 7/252 (2%)

Query: 50  AKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 31  AEEASSAIVIEQDTGKVLFEKSPNEKLPPASMTKIMTMLLIMEQVEKGKLKLEDKVRASE 90

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 91  HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 150

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRI 223
           +G++NT ++N +GL  K+  +TA D +I+   L K +P   KY       +R+   +   
Sbjct: 151 LGLKNTHFQNPTGLPAKDHYSTAYDMSIMAKELMK-YPLIRKYTGKYEDYLRENTEKKFW 209

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +L
Sbjct: 210 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKL 269

Query: 284 ITSFLEKKTLKH 295
           +     + T K 
Sbjct: 270 LDYAFGQYTTKK 281


>gi|115352994|ref|YP_774833.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria
           AMMD]
 gi|115282982|gb|ABI88499.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Burkholderia ambifaria AMMD]
          Length = 436

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 79/257 (30%), Positives = 135/257 (52%), Gaps = 9/257 (3%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
            +  A         S +++D   N +      DE   PASLTK+MT Y++FE L  KK+ 
Sbjct: 68  FMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKIS 127

Query: 100 LNTQIPVSKTAATQN--PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           +   I  S+         S+++++     +    +  +I +S ND + A  E + GSE +
Sbjct: 128 MEQIITPSEAVRRVGLDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQ 187

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F  LM+ +A+++GM+ T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F
Sbjct: 188 FVTLMNAEAQRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEF 247

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY------KDDPIVAVVMGMP 271
           +Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +           +V+V+MG P
Sbjct: 248 KYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEP 307

Query: 272 TSQERDQKALELITSFL 288
              ER Q +++++    
Sbjct: 308 KEGERTQDSMKMLNYGY 324


>gi|294142181|ref|YP_003558159.1| D-alanyl-D-alanine carboxypeptidase [Shewanella violacea DSS12]
 gi|293328650|dbj|BAJ03381.1| D-alanyl-D-alanine carboxypeptidase [Shewanella violacea DSS12]
          Length = 390

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 87/279 (31%), Positives = 150/279 (53%), Gaps = 10/279 (3%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-E 73
           L  P  ++ +   +  +    + + I+  +A  + AK   + +++D N  Q+   +   E
Sbjct: 4   LNRPLKTLILATTV--VCSSTYAAPIVTPIAPTVAAK---AYVLMDFNTGQIITEENAYE 58

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQ 130
              PASLTKMMT Y+I + +++  +    ++ VSK A ++N    SK++++   + T + 
Sbjct: 59  SLNPASLTKMMTSYVIGQEMKAGNISPEDEVVVSKKAWSKNFPDSSKMFIEVGKHVTVDD 118

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               +I +S ND   A  E I+G+E  F  LM++ AK++GM+++ ++NA GL   N  +T
Sbjct: 119 LNHGIIIQSGNDACVAMAEHIAGTEDGFVDLMNSWAKQLGMKDSHFENAHGLDATNHKST 178

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           A D AILG  L ++ P+ Y  +S + F Y      N N LL  K   +DGIKTG+T  +G
Sbjct: 179 AYDMAILGAALIRDVPKEYTLYSQKSFTYNGIKQYNRNGLLWDKSMKVDGIKTGHTSGAG 238

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +N+VTS       +V+VVMG  +   R  ++ +L+    
Sbjct: 239 YNLVTSATKDGMRLVSVVMGTRSESARKAESKKLLNYGF 277


>gi|325982052|ref|YP_004294454.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrosomonas sp. AL212]
 gi|325531571|gb|ADZ26292.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrosomonas sp. AL212]
          Length = 415

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 107/306 (34%), Positives = 173/306 (56%), Gaps = 3/306 (0%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMM 84
           R+I     +  + ++++ ++    A P+YSSIVID +   +      +  RYPASLTKMM
Sbjct: 6   RDITTGIYVFAIFLLLLIVSDSALANPRYSSIVIDADTGAVLHESNADANRYPASLTKMM 65

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TLY++FE ++ +K+ ++T++PVS  AA    + + L+     +    I ALI RSANDV+
Sbjct: 66  TLYMLFEAMEQRKMTVDTRMPVSTHAAAMPQTNIGLRTGDSISVRDAIPALIVRSANDVA 125

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
               E +  SE  F  +M++KA+++GM++T ++NASGL +  Q TTARD   L   L K+
Sbjct: 126 AVVAEALGKSEANFGRMMTDKARQLGMRSTTFRNASGLPNLEQKTTARDMVTLSTRLMKD 185

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           FP+YY YFS + F Y+     +HN+++     +DG+KTG+ R SGFN+ TS +  +  +V
Sbjct: 186 FPKYYHYFSTQSFSYKGITYNSHNRMVRNTSGVDGLKTGFIRASGFNVATSAKRGNRRVV 245

Query: 265 AVVMGMPTSQERDQKALELITSFLEK--KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTY 322
           AVVMG  T+  RDQ   +LI     +  +T++     +     + +  K        + Y
Sbjct: 246 AVVMGGNTAAARDQHMAQLIDRSFNQGNRTIQVASNSKNARAVAVTAVKMNAPTPALKPY 305

Query: 323 SQFKKI 328
            +  K 
Sbjct: 306 PEQPKA 311


>gi|229104683|ref|ZP_04235345.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock3-28]
 gi|228678747|gb|EEL32962.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock3-28]
          Length = 385

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 89/298 (29%), Positives = 154/298 (51%), Gaps = 21/298 (7%)

Query: 34  ILFLSIIMISMA-------------SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           +L LS   +S A             +   A+   S+IVI+ +  ++   K  +E   PAS
Sbjct: 1   MLLLSGTSVSFAQSEKTKQEKTEETAPKLAEQASSAIVIEQDTGKVLFDKNPNEKLPPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MT+ +I E ++  KL LN ++  S+ AA+   S+++L+     T  + +  +   S
Sbjct: 61  MTKIMTMLLIMEQVEKGKLKLNDKVRASEHAASMGGSQIFLEPGEEMTVNEMLKGIAIAS 120

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND S A  E I+GSE+ F  +M+ KAK +G++NT ++N +GL  K+  +TA D AI+  
Sbjct: 121 GNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMAR 180

Query: 200 LLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
            L K +P   KY       +R+   +   + N NKL+     +DG+KTG+T  + + +  
Sbjct: 181 ELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTA 239

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           S       +++VVMG PTS+ER+ +  +L+     +   K   T R + + +  + K 
Sbjct: 240 SAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKMYT-RGEKIKTVQVGKG 296


>gi|218663522|ref|ZP_03519452.1| probable serine-type D-Ala-D-Ala carboxypeptidase protein
           [Rhizobium etli IE4771]
          Length = 430

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 121/267 (45%), Positives = 176/267 (65%), Gaps = 3/267 (1%)

Query: 35  LFLSIIMISM--ASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFE 91
           + L+++++    A    A PKY+ IV+D     +   +  +   YPASLTKMMTLY++FE
Sbjct: 1   MALTVVLVDSVNAEAKTANPKYAGIVVDAKTGNVLYSENADRLQYPASLTKMMTLYMVFE 60

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            L+  ++ L+T +P S  AA Q P+KL ++     T EQGIL L+T SAND STA GE +
Sbjct: 61  ALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDASTALGELL 120

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE +FA LM+ KA  +GM  T Y+NA+GL +  Q+TTARDQA LGI LR++FPQYY Y
Sbjct: 121 AGSEDRFAQLMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQHFPQYYGY 180

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           FS R F++ +R I +HN+L+  +  +DGIKTGYTR +GFN+V+S++     IV+VV+G  
Sbjct: 181 FSTRAFKFGSRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSIVSVVLGGT 240

Query: 272 TSQERDQKALELITSFLEKKTLKHQQT 298
           +   RD +   LI ++L K + +   +
Sbjct: 241 SGAARDAQMRNLIATYLPKASSRGGNS 267


>gi|209545022|ref|YP_002277251.1| Serine-type D-Ala-D-Ala carboxypeptidase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532699|gb|ACI52636.1| Serine-type D-Ala-D-Ala carboxypeptidase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 420

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 95/261 (36%), Positives = 154/261 (59%), Gaps = 4/261 (1%)

Query: 37  LSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYL 93
            + +M       HA+   + SSIV+D     +      +  R+PASLTK+MTLY+ F+ L
Sbjct: 83  CAAVMAGFVPRAHAQYVGQISSIVMDARTGAILSQSNPDLQRFPASLTKLMTLYLAFKAL 142

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            + ++ L+  +PVS  +A+  PSKL L   +Y T EQ +L L+T+SAND + A GE + G
Sbjct: 143 HAGQITLDQSVPVSAHSASMEPSKLGLMPGSYLTVEQAVLGLVTKSANDAACALGELMGG 202

Query: 154 SEK-KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
            ++ +FA LM+ +A+ +GM  T ++NASGL +  Q+T+ARD A+L   +   FP YY YF
Sbjct: 203 GDEGRFADLMTRQARALGMTRTTFRNASGLPNDEQVTSARDLALLTRQIITEFPDYYHYF 262

Query: 213 SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           S+  F +  R + NH+ +L      DG+KTGYT ++G N+VTS   ++  ++ VV+G  T
Sbjct: 263 SVPAFYFHGRQVPNHDPMLRIYPGADGLKTGYTTDAGRNLVTSAIRENVRLIGVVLGART 322

Query: 273 SQERDQKALELITSFLEKKTL 293
           + +R      ++     ++ +
Sbjct: 323 NPQRSAVMASILDDGFRQEGV 343


>gi|294666894|ref|ZP_06732125.1| penicillin-binding protein 6 [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603342|gb|EFF46762.1| penicillin-binding protein 6 [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 401

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 76/250 (30%), Positives = 136/250 (54%), Gaps = 9/250 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S I++D    Q+   +   +   PAS+TK+MT Y++   +++ K+  + Q+ +S+ A  +
Sbjct: 51  SWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWRE 110

Query: 114 N-----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                  S            E     +  +S ND + A  E ++GSE+ FA LM++ A K
Sbjct: 111 GGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAK 170

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           IGM+++ + NA GL  +   +TA D A+LG  + +++P+ Y Y  I++F+  N   +N N
Sbjct: 171 IGMKDSYFVNAHGLSAEGHHSTAYDLAMLGRAMVRDYPETYAYNKIKEFQVGNIKQSNRN 230

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS-- 286
           +LL +   +DGIKTG+T  +G+ +++S +  D  ++AVVMG  + ++R   +L L+    
Sbjct: 231 RLLWRAPAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDNSEEQRATDSLALLNWGF 290

Query: 287 -FLEKKTLKH 295
            F E  +L  
Sbjct: 291 RFFETHSLYA 300


>gi|82777459|ref|YP_403808.1| D-alanyl-D-alanine carboxypeptidase [Shigella dysenteriae Sd197]
 gi|81241607|gb|ABB62317.1| penicillin binding protein 6b [Shigella dysenteriae Sd197]
          Length = 378

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 73/262 (27%), Positives = 133/262 (50%), Gaps = 11/262 (4%)

Query: 39  IIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKK 97
           I       E+HA    S +++D    Q+     + + R PASLTK+MT Y++   + S +
Sbjct: 15  IPFSPQPPEIHA---GSWVLMDYTTGQILTSGNEHQQRNPASLTKLMTGYVVDRAIDSHR 71

Query: 98  LHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
           +  +  + V + A  +        S ++LKE    +       LI  S ND   A  ++I
Sbjct: 72  ITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYI 131

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +G +++F  +M+N  +K+ +++T ++   GL    Q ++A D A+L   +    P++Y  
Sbjct: 132 AGGQRQFVEMMNNYVEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHM 191

Query: 212 FSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +   +      N N LL  K  NIDG+KTG+T  +GFN++ S       ++AVVMG 
Sbjct: 192 YSEKSLTWNGITQQNRNGLLWDKTMNIDGLKTGHTSGAGFNLMASAVDGQRRLIAVVMGA 251

Query: 271 PTSQERDQKALELITSFLEKKT 292
            +++ R+++A +L+    +  T
Sbjct: 252 DSAKGREEEARKLLRWGQQNFT 273


>gi|262403437|ref|ZP_06079995.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC586]
 gi|262349941|gb|EEY99076.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC586]
          Length = 389

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 84/324 (25%), Positives = 157/324 (48%), Gaps = 17/324 (5%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASL 80
             ++ ++  M  +  L    +S+  E         ++ID +  ++           PASL
Sbjct: 6   FLVKFSMACMAFVPTLGFSALSVIPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPASL 65

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALIT 137
           TK+MT Y+  + ++   +H   Q+ +S  A  +   + SK++++  +Y         LI 
Sbjct: 66  TKLMTSYVAGQEMKRGNIHAQDQVRISNNAWAKKFPDSSKMFIEVGSYVNLMDLYRGLIV 125

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL + N  +T  D A+L
Sbjct: 126 QSGNDASVAIAEHVAGSESAFVSLMNSWAQQLGMNNSSFANPHGLDNPNLYSTPYDIALL 185

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
           G  + ++ P+ Y  +S   F Y      N N LL  +  N+DG+KTGYT  +G+++ +S 
Sbjct: 186 GQAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASSA 245

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFL----------EKKTLKHQQTHRKDNLSS 306
              D  +++VVMG  +++ R+ ++ +L++             ++  ++HQ+    D    
Sbjct: 246 TSGDMRLISVVMGSKSTKIREAESKQLLSYGFRFFETVSPHQKETVIQHQRIWYGDKNEV 305

Query: 307 TSLKKSLMIKKLKRTYSQFKKIDA 330
                  +   L R  S  KK++A
Sbjct: 306 ALGSADTIYLTLPR--SDVKKLNA 327


>gi|228992815|ref|ZP_04152740.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus pseudomycoides DSM 12442]
 gi|228766864|gb|EEM15502.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus pseudomycoides DSM 12442]
          Length = 386

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 80/252 (31%), Positives = 139/252 (55%), Gaps = 7/252 (2%)

Query: 50  AKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 31  AEEASSAIVIEQDTGKVLFEKSPNEKLPPASMTKIMTMLLIMEQVEKGKLKLEDKVRASE 90

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 91  HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 150

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRI 223
           +G++NT ++N +GL  K+  +TA D +I+   L K +P   KY       +R+   +   
Sbjct: 151 LGLKNTHFQNPTGLPAKDHYSTAYDMSIMAKELMK-YPLIRKYTGKYEDYLRENTEKKFW 209

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +L
Sbjct: 210 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKL 269

Query: 284 ITSFLEKKTLKH 295
           +     + T K 
Sbjct: 270 LDYAFGQYTTKK 281


>gi|261343559|ref|ZP_05971204.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rustigianii
           DSM 4541]
 gi|282568708|gb|EFB74243.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rustigianii
           DSM 4541]
          Length = 403

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 89/286 (31%), Positives = 151/286 (52%), Gaps = 18/286 (6%)

Query: 31  MGKILFLSIIMISMASE------LHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASL 80
           +   L +S +  + A E      + A P     + I+ID N  ++      D+ R PASL
Sbjct: 15  LASALLISTVNFANADEAFPNTSIPAAPTIDAEAYILIDYNSGKVLAESNADQRRDPASL 74

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILA 134
           TKMMT Y+I + ++S K+  N  + V + A        +  S ++LK     +  Q    
Sbjct: 75  TKMMTSYVIGQAIKSGKIGANDMVTVGEDAWATGNPIFKGSSLMFLKPGDRVSVSQLTRG 134

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +  +S ND   A  + ++G +  F  LM+N   K+G+QNT ++   GL  + Q ++ARD 
Sbjct: 135 INLQSGNDACVAMADHVAGDQSSFVNLMNNYVSKLGLQNTHFQTVHGLDAEGQYSSARDM 194

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIV 253
           A++G  L ++ P+ Y+ +  ++F + N   TN N LL  K   +DGIKTG+T  +G+N+V
Sbjct: 195 ALIGQALIRDVPEEYEIYKEKEFTFNNIRQTNRNGLLWDKSLAVDGIKTGHTDAAGYNLV 254

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE-KKTLKHQQT 298
            S +  D  +++VVMG  +S+ RD ++ +L+T      +T+K  Q 
Sbjct: 255 ASAKDGDMRLISVVMGGKSSKGRDAESKKLLTYGFRFYETVKPLQA 300


>gi|229047768|ref|ZP_04193348.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH676]
 gi|228723560|gb|EEL74925.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH676]
          Length = 377

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 83/269 (30%), Positives = 145/269 (53%), Gaps = 8/269 (2%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 22  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEEVEKGKLKLTDKVRASE 81

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 82  HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 141

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRI 223
           +G++NT ++N +GL  K+  +TA D AI+   L K +P   KY       +R+   +   
Sbjct: 142 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFW 200

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +L
Sbjct: 201 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKL 260

Query: 284 ITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           +     +   K   T R + + +  + K 
Sbjct: 261 LDYAFGQYMTKKLYT-RGEKIKTVQVGKG 288


>gi|138895883|ref|YP_001126336.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196248772|ref|ZP_03147472.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16]
 gi|134267396|gb|ABO67591.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196211648|gb|EDY06407.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16]
          Length = 391

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 145/293 (49%), Gaps = 8/293 (2%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A    S+I+I+ +  ++   K   E   PAS+TK+MT+ +I E +   KL  + ++  S+
Sbjct: 36  ADEAKSAILIERDTGKVLYEKNPHEKLPPASMTKIMTMLLIMEAIDEGKLSYDEKVRTSE 95

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T ++ + A+   SAND S A  E I+GSE+ F  +M+ KAK+
Sbjct: 96  YAASMGGSQIFLEPGEEMTVDELLRAIAIGSANDASVAMAERIAGSEEAFVEMMNEKAKE 155

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRI 223
           +G++ T + N +GL  +   ++A D AI+   L K +    KY S     +R+   +   
Sbjct: 156 LGLKETKFANTTGLPAEGHYSSAYDMAIMARELLK-YEGITKYTSKYEDYLRENTDKKFW 214

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           + N N+L+     +DG+KTG+T  +G+ +  + +     ++AVV G PT + R+ +  ++
Sbjct: 215 LVNTNRLVKFYPGVDGLKTGFTSEAGYCLTATAKKNGMRVIAVVFGAPTPKSRNAQITKM 274

Query: 284 ITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
           +          H    R + ++   + K         T      +  K  S +
Sbjct: 275 LDYAFHHYQ-AHPVYKRNETVARVDVSKGKQKSVAAVTSEPVSVLTKKGQSVE 326


>gi|167717860|ref|ZP_02401096.1| penicillin-binding protein 6 [Burkholderia pseudomallei DM98]
 gi|167892592|ref|ZP_02479994.1| penicillin-binding protein 6 [Burkholderia pseudomallei 7894]
          Length = 378

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 85/310 (27%), Positives = 154/310 (49%), Gaps = 21/310 (6%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  A         S +++D + NQ+      DE   PASLTK+MT Y++FE L +KK+ +
Sbjct: 10  VPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 69

Query: 101 NTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
              +  S+      ++ S+++++     +    +  +I +S ND + A  E + GSE +F
Sbjct: 70  EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 129

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+ +A+++GM++T + + +G+ D N  TTA D A L   L +++P YY  FS+++F 
Sbjct: 130 VNMMNAEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFT 189

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMP 271
           Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +            +V V+MG  
Sbjct: 190 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGET 249

Query: 272 TSQERDQKALELI----TSFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKKLKR 320
              +R Q +++++    T+F   +  K  Q          K N     +KK   I   + 
Sbjct: 250 KESDRVQDSMKMLNYGYTAFDSVRLYKASQPIDTPRVYKGKSNNVQVGVKKDQFITVPRG 309

Query: 321 TYSQFKKIDA 330
              + K   A
Sbjct: 310 LADKVKPEVA 319


>gi|262274734|ref|ZP_06052545.1| D-alanyl-D-alanine carboxypeptidase [Grimontia hollisae CIP 101886]
 gi|262221297|gb|EEY72611.1| D-alanyl-D-alanine carboxypeptidase [Grimontia hollisae CIP 101886]
          Length = 347

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 80/235 (34%), Positives = 127/235 (54%), Gaps = 5/235 (2%)

Query: 59  IDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN--- 114
           +D N  ++       E   PASLTKMMT Y+I + ++   + L+  + +SK A  +N   
Sbjct: 1   MDYNSGKILAENNAYERLNPASLTKMMTSYVIGQEIERGNISLDDDVVISKNAWAKNFPG 60

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            SK++++  T    E     +I +S ND   A  E I+GSE  F  LM+  AK +GM NT
Sbjct: 61  SSKMFIEVGTTVKVEDLNRGIIIQSGNDACVAMAEHIAGSEDSFVDLMNGWAKTLGMNNT 120

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-K 233
            + N+ GL D    +T  D A+LG  L ++ P+ Y+ ++ + F Y      N N LL  K
Sbjct: 121 KFSNSHGLDDDGLYSTPYDMALLGQALIRDVPEEYRIYNEKSFTYNGITQYNRNGLLWDK 180

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
             N+DGIKTG+T  +G+++V+S    D  ++AVVMG  ++  R  ++ +L+    
Sbjct: 181 SMNVDGIKTGHTEKAGYSLVSSATEGDMRLIAVVMGTESANARKAESKKLLNYGF 235


>gi|221134237|ref|ZP_03560542.1| D-alanyl-D-alanine carboxypeptidase [Glaciecola sp. HTCC2999]
          Length = 385

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 86/256 (33%), Positives = 145/256 (56%), Gaps = 8/256 (3%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSK 96
           ++++I  A  + AK     I++D N   +   +  D    PASLTK+MT+Y+I + LQ+ 
Sbjct: 19  AVVIIPPAPSVAAK---GYILLDANTGDVIAEQNADMQLAPASLTKIMTMYVIGQELQAG 75

Query: 97  KLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            + L  ++ +S+ A  +N    SK++++  T  +    +  ++ +S ND   A  E I+G
Sbjct: 76  NIALTDEVIISENAWAKNFPDSSKMFIEVGTRVSVSDLMHGIVVQSGNDACVAMAEHIAG 135

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           SE+ FA +M+  A K+GM  T + NA GLHD    T+ RD A+L   L K+ P+ Y+ +S
Sbjct: 136 SEEAFASMMNAHAAKLGMTATNFVNAHGLHDSQHFTSPRDMAVLSRALIKDNPEEYELYS 195

Query: 214 IRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F Y N    N N LL  K  ++DGIKTG+T ++G++++TS    D  +V+VVMG  +
Sbjct: 196 KKEFTYNNIRQYNRNSLLWDKALSVDGIKTGHTSDAGYSLITSATQGDMRLVSVVMGTDS 255

Query: 273 SQERDQKALELITSFL 288
            + R  +  +L+    
Sbjct: 256 ERARKVENKKLLRYGF 271


>gi|296134797|ref|YP_003642039.1| Beta-lactamase [Thiomonas intermedia K12]
 gi|295794919|gb|ADG29709.1| Beta-lactamase [Thiomonas intermedia K12]
          Length = 413

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 71/259 (27%), Positives = 135/259 (52%), Gaps = 9/259 (3%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSK 96
           +++      +L A+   S +V+D+   Q+        +  PASLTK+MT Y+ F+ L+  
Sbjct: 51  AMLATVPPPKLDAR---SWLVVDLTSGQILAEHDAHAQEAPASLTKLMTAYLTFKALKEG 107

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
            + LN  +  SK A     S++++  +   +    +L +I +S ND +    + + GS  
Sbjct: 108 TIKLNQMVTESKEAWQTGGSRMFIDPRVPVSVNDLLLGMIVQSGNDAAMTLAQTVGGSVS 167

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP-QYYKYFSIR 215
            F  +M+ +A++ G++ T + + +GL D    TTA D +I+   + ++FP  Y +YF ++
Sbjct: 168 AFVAMMNRQAQQWGLKGTHFMDPTGLPDPGHHTTAYDLSIIATHIIRDFPADYARYFKVK 227

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY----KDDPIVAVVMGMP 271
           +F Y +    N   LL    ++DG+KTGYT  +G+ ++TS +         ++ VVMG P
Sbjct: 228 EFTYNHITQPNRVSLLFTDPSVDGMKTGYTSEAGYCMITSAQRQFPNGPRRLLTVVMGTP 287

Query: 272 TSQERDQKALELITSFLEK 290
           T + R +++  L+    + 
Sbjct: 288 TERARGEESQVLLNWAYQN 306


>gi|254500491|ref|ZP_05112642.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii
           DFL-11]
 gi|222436562|gb|EEE43241.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii
           DFL-11]
          Length = 558

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 116/298 (38%), Positives = 178/298 (59%), Gaps = 1/298 (0%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTL 86
           I  +GK+L +  +++   +   A PKY+ IV+D    +       D  R+PASLTK+MT 
Sbjct: 2   IGRLGKMLVVGTLVLCAPTVASANPKYAGIVVDAKTGKTLYAANADAYRFPASLTKIMTT 61

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           YIIFE L++ +L +++++ VSK AA + PSKL LK  +  + +  I AL+T+SANDV+T 
Sbjct: 62  YIIFEELEAGRLSMSSRLKVSKNAAAEVPSKLGLKPGSTISVKDAIGALVTKSANDVATT 121

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E I+GSE  FA  M+  A+++GM  T ++NA GL +  Q TTARD A LG  +++ FP
Sbjct: 122 VAENIAGSEAAFARRMTRTARQLGMSKTTFRNAHGLPNSKQRTTARDMATLGRAIQERFP 181

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           + YK F+ R ++Y+ R + NHN+LL  +  +DGIKTGY R SGFN+VTS++  +  IVAV
Sbjct: 182 ERYKLFNTRVYKYKGRNLRNHNRLLGSVKGVDGIKTGYIRASGFNLVTSVQRNNRHIVAV 241

Query: 267 VMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
           VMG  T   R+    +LI  +L K +   +      +        +  +K+     ++
Sbjct: 242 VMGGRTGARRNAHMTDLIGRYLHKASRGTRTAPLIASAGPVFAFDAASLKEPPLPANK 299


>gi|238757942|ref|ZP_04619124.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia aldovae ATCC
           35236]
 gi|238703927|gb|EEP96462.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia aldovae ATCC
           35236]
          Length = 397

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 75/252 (29%), Positives = 129/252 (51%), Gaps = 8/252 (3%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A         + +++D N  ++      D+   PASLTK+M+ Y+I + L++ K+H +  
Sbjct: 32  APTAPPVDAKAYVLMDYNSGKILAEGNSDQRLDPASLTKIMSSYVIGQALKAGKVHPDDL 91

Query: 104 IPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           + V K A        +  S ++LK             ++ +S ND S A  ++I+GS+  
Sbjct: 92  VTVGKDAWATGNPALRGSSLMFLKPGDQVRLSDLNKGIVIQSGNDASIALADYIAGSQDS 151

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F  LM+N AK +G+ NT +    GL    Q +TARD A+LG  L ++ P  Y     ++F
Sbjct: 152 FVGLMNNYAKALGLANTHFMTVHGLDAPGQYSTARDMAVLGQALIRDVPDEYALHKEKEF 211

Query: 218 RYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
            +      N N+LL   + N+DG+KTG+T  +G N+V S       +++VV+G P+ + R
Sbjct: 212 TFNKIRQINRNRLLWSTNLNVDGMKTGFTTGAGHNLVASATDGPMRLISVVLGAPSDRIR 271

Query: 277 DQKALELITSFL 288
             ++ +L+T   
Sbjct: 272 FNESEKLLTWGF 283


>gi|297529521|ref|YP_003670796.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. C56-T3]
 gi|297252773|gb|ADI26219.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. C56-T3]
          Length = 391

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 83/301 (27%), Positives = 154/301 (51%), Gaps = 20/301 (6%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A    S+I+I+ +  ++   K   EP  PAS+TK+MT+ ++ E +   KL  + ++  S+
Sbjct: 36  ADEAKSAILIERDTGKVLYEKNAHEPLPPASMTKIMTMLLVMEAIDEGKLSYDEKVRASE 95

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T ++ +  +   SAND S A  E I+GSE+ F  +M+ KAK+
Sbjct: 96  YAASMGGSQIFLEPGEEMTVDELLRGIAIGSANDASVAMAEQIAGSEEAFVEMMNEKAKQ 155

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRI 223
           +G++NT + NA+GL  ++  ++A D A++   L K +    KY S     +R+   +   
Sbjct: 156 LGLKNTHFANATGLPAEHHYSSAYDMAMMARELLK-YEDITKYTSKYEDYLRENTDKKFW 214

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           + N N+L+     +DG+KTGYT  + + +  + +     ++AVV G PT + R+ +  ++
Sbjct: 215 LVNTNRLVKFYPGVDGLKTGYTAEAKYCLTATAKKNGMRVIAVVFGAPTPKSRNAQITKM 274

Query: 284 ITSFLEKK----TLKHQQTHRKDNL---------SSTSLKKSLMIKKLKRTYSQFKKIDA 330
           +     +       K  +T  + N+         + TS   S++ KK +      K I  
Sbjct: 275 LDYAFSQYRTHPVYKRNETVARVNISKGKRSSVEAVTSEPVSVLTKKGQSVEQIEKVIKV 334

Query: 331 K 331
           K
Sbjct: 335 K 335


>gi|148252530|ref|YP_001237115.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp.
           BTAi1]
 gi|146404703|gb|ABQ33209.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp.
           BTAi1]
          Length = 480

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 83/283 (29%), Positives = 148/283 (52%), Gaps = 8/283 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + ++++ +  ++   +    P YPAS+TK+MT Y+  + ++  KL L+T + VS TAA
Sbjct: 31  AEALLLVEADTGKVLEAQNATYPWYPASVTKLMTAYVTLKAVKEGKLSLDTLVTVSPTAA 90

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            Q+PSK+  +  T  T +  +  ++ +SAND++    E + GS   F+ +M+  A+K+GM
Sbjct: 91  AQSPSKMGYRPGTQLTVDNALKMMLVKSANDMAVVLAEGVGGSIDGFSAMMNETAQKLGM 150

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
             T Y N +GL    QIT+ARD AIL   + ++ P+Y  +  I   RY  R++ N N+L+
Sbjct: 151 TQTSYVNPNGLPADGQITSARDLAILARAIIRDLPEYEYFVHIPSIRYGRRVVQNFNRLI 210

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
            +    DG KTG+   SG+N+V S       ++AVV+G  + Q R  +A++++       
Sbjct: 211 GRYPGADGFKTGFICASGYNLVASATRNGKRLIAVVLGASSGQMRGVRAIQMLDRGFNGN 270

Query: 292 TLKHQQTHRKD-------NLSSTSLKKSLMIKKLKRTYSQFKK 327
            L   +    +       + +  +L+  +   K  R  S   +
Sbjct: 271 QLGWLKAPLGNVEQLVPVDATPPNLRDDMCGGKRHRPASDDDE 313


>gi|59711352|ref|YP_204128.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Vibrio fischeri ES114]
 gi|197335666|ref|YP_002155507.1| D-alanyl-D-alanine carboxypeptidase DacC [Vibrio fischeri MJ11]
 gi|59479453|gb|AAW85240.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Vibrio fischeri ES114]
 gi|197317156|gb|ACH66603.1| D-alanyl-D-alanine carboxypeptidase DacC [Vibrio fischeri MJ11]
          Length = 391

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 78/267 (29%), Positives = 141/267 (52%), Gaps = 8/267 (2%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRY-PASLTKMMT 85
           ++   +  S + ++  + +   P+ ++   +++D +  ++   K    R  PASLTKMMT
Sbjct: 12  ILSSFILGSTVAVAAPAVIPNAPQIAAKGYVLMDYHSGKVLAEKDMNVRMNPASLTKMMT 71

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSAND 142
            Y+I + ++S  + ++  + +SK A  +N    SK++++  +     +    +I +S ND
Sbjct: 72  SYVIGQEIESGNISMDDDVVISKNAWAKNFPGSSKMFIEVGSTVKVRELNKGIIIQSGND 131

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
              A  E ++GSE  F  LM+  AK + ++NT + N  GL   +  +T  D A++G  L 
Sbjct: 132 ACVAMAEHVAGSEDAFVDLMNAWAKTLNLKNTHFANVHGLDRDDLYSTPYDMALIGQALI 191

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           ++ P+ Y+ +S + F Y      N N LL  K  N+DGIKTG+T  +GFN+V+S      
Sbjct: 192 RDVPEEYRVYSEKSFTYNGITQYNRNGLLWDKSMNVDGIKTGHTNGAGFNLVSSATEGKM 251

Query: 262 PIVAVVMGMPTSQERDQKALELITSFL 288
            +VAVVMG  +   R  ++ +L+    
Sbjct: 252 RLVAVVMGTKSGNARKAESKKLLNYGF 278


>gi|254196217|ref|ZP_04902641.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei S13]
 gi|169652960|gb|EDS85653.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei S13]
          Length = 437

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 154/310 (49%), Gaps = 21/310 (6%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  A         S +++D + NQ+      DE   PASLTK+MT Y++FE L +KK+ +
Sbjct: 69  VPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 128

Query: 101 NTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
              +  S+      ++ S+++++     +    +  +I +S ND + A  E + GSE +F
Sbjct: 129 EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 188

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+ +A+++GM+NT + + +G+ D N  TTA D A L   L +++P YY  FS+++F 
Sbjct: 189 VNMMNAEAQRLGMKNTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFT 248

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMP 271
           Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +            +V V+MG  
Sbjct: 249 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGET 308

Query: 272 TSQERDQKALELI----TSFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKKLKR 320
              +R Q +++++    T+F   +  K  Q          K N     +KK   I   + 
Sbjct: 309 KESDRVQDSMKMLNYGYTAFDSVRLYKAGQPIGTPRVYKGKSNNVQVGVKKDQFITVPRG 368

Query: 321 TYSQFKKIDA 330
              + K   A
Sbjct: 369 LADKVKPEVA 378


>gi|192360123|ref|YP_001981301.1| D-alanyl-D-alanine carboxypeptidase family [Cellvibrio japonicus
           Ueda107]
 gi|190686288|gb|ACE83966.1| D-alanyl-D-alanine carboxypeptidase family [Cellvibrio japonicus
           Ueda107]
          Length = 405

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 79/260 (30%), Positives = 136/260 (52%), Gaps = 7/260 (2%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKL 98
           + I  A +L A      I++D     +      ++   PASLTKMM+ Y+I + L+  + 
Sbjct: 46  VAIPQAPQLAA---TGYILVDATTGSIIAEFNAEQKLPPASLTKMMSSYLIVDELEKGRY 102

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
              T +P+S  A     S++++KE T       +  +I +S ND + A  E+ SG+E  F
Sbjct: 103 QEQTLVPISVKAWQMGGSRMFVKEGTQVPLIDLLRGVIIQSGNDATVALAEYHSGNEDAF 162

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
              M+ KA ++GM NT ++N+SG   +  +TTA+D AIL   +  + P YY   + + F 
Sbjct: 163 VDRMNQKAAELGMVNTHFENSSGWPAEGHLTTAKDLAILARAIINDHPIYYPLHAEKYFV 222

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           Y +    N N+LL +   +DG+KTG+T  +G+ +V S + ++  ++AVVMG    + R  
Sbjct: 223 YNDIRQRNRNELLFRDETVDGLKTGHTEEAGYCLVASSKRENTRLIAVVMGTANEKARAA 282

Query: 279 KALELI---TSFLEKKTLKH 295
           +  +L+     + +  TL  
Sbjct: 283 ETQKLLAYGFRYFQTTTLYQ 302


>gi|225023258|ref|ZP_03712450.1| hypothetical protein EIKCOROL_00110 [Eikenella corrodens ATCC
           23834]
 gi|224943903|gb|EEG25112.1| hypothetical protein EIKCOROL_00110 [Eikenella corrodens ATCC
           23834]
          Length = 414

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 75/238 (31%), Positives = 133/238 (55%), Gaps = 1/238 (0%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             +  V D    QM    + +E   PASLTK+MT Y++F+ L+  KL  +    VS+   
Sbjct: 62  ASAYAVYDAQSGQMLASHKLNEHIEPASLTKLMTAYLVFKALEEGKLKPDQTFTVSEQGW 121

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S+++L  KT    +  +  +I +S ND S    E ++GSE +F  LM+ +AK++GM
Sbjct: 122 KAEGSRMFLDPKTPARVDDLLKGVIVQSGNDASITLAEAVAGSEAQFVQLMNAEAKRLGM 181

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
            +T ++N++GL      T+ +D   L   +  ++PQYY  ++I+ + Y N    N N LL
Sbjct: 182 NDTHFENSTGLPGAQHYTSVQDLITLSAAIIHDYPQYYPLYAIQSYSYNNITQPNRNLLL 241

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
            +  ++DG+KTG+T ++G+N+V S +     +++VV+G  + Q R  ++ +L+   L+
Sbjct: 242 YRDPDVDGMKTGHTDSAGYNLVASSKRNGRRVISVVVGTESMQARAAESSKLLNWALQ 299


>gi|167625150|ref|YP_001675444.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella halifaxensis
           HAW-EB4]
 gi|167355172|gb|ABZ77785.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella halifaxensis
           HAW-EB4]
          Length = 390

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 83/280 (29%), Positives = 145/280 (51%), Gaps = 10/280 (3%)

Query: 14  FLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD- 72
            L  P  ++    ++  +      + ++   A  + AK   + +++D N  Q+   +   
Sbjct: 3   LLNKPLKTLLFATSVAALSVQ--AAPVVTPNAPTVAAK---AYVLMDYNTGQIIAEENAY 57

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTE 129
           E   PASLTKMMT Y+I   ++   +    ++ +SK A ++N    SK++++     T E
Sbjct: 58  ESLNPASLTKMMTSYVIGHEIKVGNVSPTDEVTISKKAWSKNFPDSSKMFIEVGKKVTVE 117

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           +    +I +S ND   A  E I+G+E  F  LM++ AK++GMQ++ ++N+ GL   N  +
Sbjct: 118 ELNKGIIIQSGNDACVAMAEHIAGTEDGFVDLMNSWAKQLGMQDSYFENSHGLDSDNHKS 177

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNS 248
           TA D AILG  + ++ P  Y  +  + F Y      N N LL  K  ++DGIKTG+T  +
Sbjct: 178 TAYDMAILGAAIIRDVPDEYAVYKEKSFTYNGIKQYNRNGLLWDKSLSVDGIKTGHTSGA 237

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           G+N+VTS       +++VVMG  +   R  ++ +L+    
Sbjct: 238 GYNLVTSATKDGMRLISVVMGTKSEAARKAESKKLLNYGF 277


>gi|134096155|ref|YP_001101230.1| D-alanyl-D-alanine carboxypeptidase [Herminiimonas arsenicoxydans]
 gi|133740058|emb|CAL63109.1| Putative penicillin-binding (D-alanyl-d-alanine carboxypeptidase)
           transmembrane protein [Herminiimonas arsenicoxydans]
          Length = 382

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 90/289 (31%), Positives = 157/289 (54%), Gaps = 14/289 (4%)

Query: 29  QLMGKILFLSIIM--ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMT 85
            L   +L LS     +  A  + AK   S +++D   NQ+    + + R  PASLTK+MT
Sbjct: 7   ALAVAVLSLSTAFAQVVPAPTIAAK---SWLLLDATSNQILASNEADVRIEPASLTKLMT 63

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNP--SKLYLKEKTYFTTEQGILALITRSANDV 143
            Y+ F  +Q K++ LN  I VS  A   +P  SK++++ +   +    +  LI +S ND 
Sbjct: 64  AYVAFSAIQDKRIALNQMITVSTNAWKVDPESSKMFIEPRVPVSVNDLLYGLIVQSGNDA 123

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           + A  E ++G+E  FA LM+ +A+++GM++T + N  GL   N  +TARD A+L   L  
Sbjct: 124 AVALAEAVAGTEDAFAALMNREAERMGMKSTRFANPHGLPSPNNYSTARDLAVLATHLVS 183

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY----K 259
           + P++YK +S + F Y     +N N+LL     +DG+KTGYT+N+G+ ++++ +      
Sbjct: 184 DHPEFYKIYSTKDFTYNKIKQSNRNRLLWLDPTVDGMKTGYTQNAGYCLISTAKRPNGAN 243

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
           +  +++VV+G  + Q R Q++ +L+    +       + + KD    T 
Sbjct: 244 ERRLISVVIGTASDQARAQESQKLLNWGFQN--FDAVKLYSKDVAIDTP 290


>gi|283479159|emb|CAY75075.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Erwinia pyrifoliae
           DSM 12163]
          Length = 411

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 82/276 (29%), Positives = 147/276 (53%), Gaps = 18/276 (6%)

Query: 31  MGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQ-DEPRYPASL 80
            G ++ LS+ +++ A +++ K            + ++ID N  ++   K  D  R PASL
Sbjct: 22  AGMLIALSLNVVAYADDVNIKTMIPGVPDIDAEAYVLIDYNSGKVLAEKNADARRDPASL 81

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILA 134
           TKMMT Y+I + +++ K+H +  + V K A        +  S ++LK        Q    
Sbjct: 82  TKMMTSYVIGQAIKAGKIHQDDMVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVSQLTRG 141

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           ++ +S ND   A  ++++GS++ F  LM+N  K +G+QNT ++   GL  + Q ++ARD 
Sbjct: 142 IVLQSGNDACVAMADYVAGSQETFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYSSARDM 201

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIV 253
           A++G  L ++ P  Y  +  ++F + N    N N LL     N+DGIKTG+T ++G+N+V
Sbjct: 202 ALIGRALIRDVPDEYAVYHEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTESAGYNLV 261

Query: 254 TSLRYK-DDPIVAVVMGMPTSQERDQKALELITSFL 288
            S        +++ VMG  T + R+ ++ +L+T   
Sbjct: 262 ASATEGQQMRLISTVMGGHTYKGRETESKKLLTWGF 297


>gi|152981033|ref|YP_001354938.1| D-alanyl-D-alanine carboxypeptidase [Janthinobacterium sp.
           Marseille]
 gi|151281110|gb|ABR89520.1| D-alanyl-D-alanine carboxypeptidase (peptidase family s11)
           [Janthinobacterium sp. Marseille]
          Length = 382

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 86/296 (29%), Positives = 162/296 (54%), Gaps = 13/296 (4%)

Query: 29  QLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMM 84
           +L+  I    + + S  ++    P     S +++D   NQ+    + + R  PASLTK+M
Sbjct: 3   KLLAAIAATVLSLSSAFAQSVPSPTINAKSWLLLDATSNQVLASNEPDMRIEPASLTKLM 62

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNP--SKLYLKEKTYFTTEQGILALITRSAND 142
           T Y+ F  +Q KKL LN  I +S  A   +P  SK++++ +        +  LI +S ND
Sbjct: 63  TAYVAFTAIQDKKLDLNQMITISTNAWKVDPSSSKMFIEPRVPVKVNDLLYGLIVQSGND 122

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E ++G+E  F  LM+ +A+++GM++T + N  GL   +  +TARD ++L   L 
Sbjct: 123 AAVAIAEAVAGTEDAFVALMNREAERMGMKSTHFANPHGLPSASNYSTARDLSVLASHLI 182

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY---- 258
            + P++YK +S +++ Y N    N N+LL     +DG+KTGYT+ +G+ ++++ +     
Sbjct: 183 NDHPEFYKIYSTKEYTYNNIKQPNRNRLLWLDPTVDGMKTGYTQGAGYCLISTAKRPNGT 242

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITS-FLEKKTLKHQQTHRKDNLSSTSLKKSL 313
            +  +++VV+G  + Q R Q++ +L+   FL   T+K     + + +++ ++ K  
Sbjct: 243 GERRLISVVLGTISDQARAQESQKLLNWGFLNFDTVKLYA--KNEPIATPNVWKGT 296


>gi|146343356|ref|YP_001208404.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp.
           ORS278]
 gi|146196162|emb|CAL80189.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp.
           ORS278]
          Length = 476

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 87/310 (28%), Positives = 160/310 (51%), Gaps = 11/310 (3%)

Query: 33  KILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFE 91
           KI+ ++  ++      HA+   + ++++ +  ++   +    P YPAS+TK+MT Y+  +
Sbjct: 14  KIIAVAAALMLAPRMAHAE---ALLLVEADTGKVLEAQNATYPWYPASVTKLMTAYVTLK 70

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            ++  K  L+T + VS TAA+Q+PSK+  +  T  T +  +  ++ +SAND++    E I
Sbjct: 71  AVKDGKASLDTLLTVSPTAASQSPSKMGYRPGTQVTVDNALKMMLVKSANDMAVVLAEGI 130

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            GS   F+I+M+  A+++GM  T Y N +GL    QIT+ARD AIL   + ++ P+Y  +
Sbjct: 131 GGSIDGFSIMMNETAQRLGMTQTSYVNPNGLPADGQITSARDLAILARAIIRDLPEYEYF 190

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
             I   RY  R++ N N+L+ +    DG KTG+   SG+N+V S       ++AVV+G  
Sbjct: 191 VHIPSIRYGRRVVQNFNRLIGRYPGADGFKTGFICASGYNLVASATRNGKRLIAVVLGAS 250

Query: 272 TSQERDQKALELITSFLEKKTLKHQQTHRKD-------NLSSTSLKKSLMIKKLKRTYSQ 324
           + Q R  +A++++        L   +    +       + +  +L+  +   +  R  S 
Sbjct: 251 SGQMRAVRAIQMLDRGFNTNQLSWLKAPLGNVEQLVPVDATPPNLRDDMCSGRRHRPASD 310

Query: 325 FKKIDAKAHS 334
               +A    
Sbjct: 311 DDGEEASNEG 320


>gi|20807777|ref|NP_622948.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516333|gb|AAM24552.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 380

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 77/311 (24%), Positives = 146/311 (46%), Gaps = 19/311 (6%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           +++   L+  ++F         S++ +    ++IV+D N  ++   K    + P AS TK
Sbjct: 1   MKKYFSLLLILMFFVTFSKVYGSDIPSVSAKAAIVMDQNTGRVLYEKNAHLKLPMASTTK 60

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MTL I  E     + +LN  + VS+ AA+   S ++L        E  +  ++  S ND
Sbjct: 61  IMTLLIALE-----RGNLNDIVTVSQKAASVGGSSIWLSPGEKIDMESLLYGIMLNSGND 115

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILGIL 200
            +TA  E I G+ + F  +M+ KAK+IG  NT +   SGL     +  TTA D A++   
Sbjct: 116 AATAIAEHIGGTVENFVEMMNQKAKEIGAYNTHFVTPSGLDIGIDDHYTTAYDLALITRY 175

Query: 201 LRKNFPQYYKYFSIRKFRYR------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
              N+P++ +  S ++          +R + N NKLL      DG+KTG+T  +G  +V+
Sbjct: 176 AFLNYPKFAEIVSTKEKTIPCEGKEWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVS 235

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLM 314
           S   +    +AVV+  P   E    +++++     +   K  +   ++++      +   
Sbjct: 236 SATREGRRFIAVVLNSPPMWE---DSMKILDYAFSR--FKPFKVFERNDVVKKVKVEKGK 290

Query: 315 IKKLKRTYSQF 325
           I++++    + 
Sbjct: 291 IEEIEVAVEKD 301


>gi|56420846|ref|YP_148164.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus kaustophilus
           HTA426]
 gi|261417853|ref|YP_003251535.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC61]
 gi|319767335|ref|YP_004132836.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC52]
 gi|56380688|dbj|BAD76596.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
           [Geobacillus kaustophilus HTA426]
 gi|261374310|gb|ACX77053.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC61]
 gi|317112201|gb|ADU94693.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC52]
          Length = 391

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 83/301 (27%), Positives = 154/301 (51%), Gaps = 20/301 (6%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A    S+I+I+ +  ++   K   EP  PAS+TK+MT+ ++ E +   KL  + ++  S+
Sbjct: 36  ADEAKSAILIERDTGKVLYEKNAHEPLPPASMTKIMTMLLVMEAIDEGKLSYDEKVRASE 95

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T ++ +  +   SAND S A  E I+GSE+ F  +M+ KAK+
Sbjct: 96  YAASMGGSQIFLEPGEEMTVDELLRGIAIGSANDASVAMAEQIAGSEEAFVEMMNEKAKQ 155

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRI 223
           +G++NT + NA+GL  ++  ++A D A++   L K +    KY S     +R+   +   
Sbjct: 156 LGLKNTHFANATGLPAEHHYSSAYDMAMMARELLK-YEDITKYTSKYEDYLRENTDKKFW 214

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           + N N+L+     +DG+KTGYT  + + +  + +     ++AVV G PT + R+ +  ++
Sbjct: 215 LVNTNRLVKFYPGVDGLKTGYTAEAKYCLTATAKKNGMRVIAVVFGAPTPKSRNAQITKM 274

Query: 284 ITSFLEKK----TLKHQQTHRKDNL---------SSTSLKKSLMIKKLKRTYSQFKKIDA 330
           +     +       K  +T  + N+         + TS   S++ KK +      K I  
Sbjct: 275 LDYAFSQYRTHPVYKRNETVARVNISKGKRSSVEAVTSEPVSVLTKKGQSVEQIEKVIKV 334

Query: 331 K 331
           K
Sbjct: 335 K 335


>gi|322833903|ref|YP_004213930.1| Beta-lactamase [Rahnella sp. Y9602]
 gi|321169104|gb|ADW74803.1| Beta-lactamase [Rahnella sp. Y9602]
          Length = 402

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 78/281 (27%), Positives = 138/281 (49%), Gaps = 21/281 (7%)

Query: 29  QLMGKILFLSIIMISMASE-------------LHAKPKYSSIVIDVNKNQMTGF-KQDEP 74
           +L+  + F ++I +S AS              +      + I+ID N  ++      D  
Sbjct: 8   RLVKSLAFGTVITLSAASAYADDVNLKTMIPGVPQIDAEAYILIDYNSGKVLAEMNADAR 67

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTT 128
           R PASLTKMMT Y+I + +++ K+     + V   A        +  S ++LK       
Sbjct: 68  RDPASLTKMMTSYVIGQSIKAGKISPTDIVTVGPDAWATGNPVFKGSSLMFLKPGDRVPV 127

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            +    +I +S ND   A  + ++GS+  F  +M+N    +G++NT +    GL    Q 
Sbjct: 128 SELNRGIILQSGNDACVAMADHVAGSQDAFVAIMNNYVNSLGLKNTHFGTVHGLDAAGQY 187

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRN 247
           ++ARD A++G  L ++ P+ Y  +  ++F + N    N N LL     N+DGIKTG+T +
Sbjct: 188 SSARDMALIGQALIRDVPEEYATYKEKEFTFNNIRQMNRNGLLWDNSLNVDGIKTGHTDS 247

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +G+N+V S       +++ VMG  T + R+ ++ +L+T   
Sbjct: 248 AGYNLVASATEGQMRLISAVMGGHTYKGREVESKKLLTWGF 288


>gi|289663962|ref|ZP_06485543.1| D-alanyl-D-alanine carboxypeptidase precursor [Xanthomonas
           campestris pv. vasculorum NCPPB702]
          Length = 371

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 75/250 (30%), Positives = 136/250 (54%), Gaps = 9/250 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S I++D    Q+   +   +   PAS+TK+MT Y++   +++ K+  + Q+ +S+ A  +
Sbjct: 21  SWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWRE 80

Query: 114 NP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                  S            E     +  +S ND + A  E ++GSE+ FA LM++ A K
Sbjct: 81  GGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAK 140

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           IGM+++ + NA GL  +   +TA D A+LG  + +++P+ Y Y  I++F+  +   +N N
Sbjct: 141 IGMKDSYFVNAHGLSAEGHHSTAYDLAMLGRAMVRDYPETYAYNKIKEFQVGSIKQSNRN 200

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS-- 286
           +LL +   +DGIKTG+T  +G+ +++S +  D  ++AVVMG  + ++R   +L L+    
Sbjct: 201 RLLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNWGF 260

Query: 287 -FLEKKTLKH 295
            F E  +L  
Sbjct: 261 RFFETHSLYA 270


>gi|189351640|ref|YP_001947268.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans ATCC
           17616]
 gi|189335662|dbj|BAG44732.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans ATCC
           17616]
          Length = 410

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 78/258 (30%), Positives = 139/258 (53%), Gaps = 10/258 (3%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
            +  A         S +++D   N +      DE   PASLTK+MT Y++FE L  KK+ 
Sbjct: 41  FMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKIS 100

Query: 100 LNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           +   +  S+      ++ S+++++     +    +  +I +S ND + A  E + GSE +
Sbjct: 101 MEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQ 160

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F  +M+++A+++GM+ T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F
Sbjct: 161 FVTMMNDEAQRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEF 220

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGM 270
           +Y N    N N+LL     +DG+KTG+T+ +GF +++S +            +VAV+MG 
Sbjct: 221 KYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGFCLISSAKRPIPGASDAQRRLVAVMMGE 280

Query: 271 PTSQERDQKALELITSFL 288
           P   +R Q +++++    
Sbjct: 281 PKESDRTQDSMKMLNYGY 298


>gi|162149241|ref|YP_001603702.1| D-alanyl-D-alanin carboxypeptidase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787818|emb|CAP57416.1| putative D-alanyl-D-alanin carboxypeptidase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 423

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 95/261 (36%), Positives = 154/261 (59%), Gaps = 4/261 (1%)

Query: 37  LSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYL 93
            + +M       HA+   + SSIV+D     +      +  R+PASLTK+MTLY+ F+ L
Sbjct: 86  CAAVMAGFVPRAHAQYVGQISSIVMDARTGAILSQSNPDLQRFPASLTKLMTLYLAFKAL 145

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            + ++ L+  +PVS  +A+  PSKL L   +Y T EQ +L L+T+SAND + A GE + G
Sbjct: 146 HAGQITLDQSVPVSAHSASMEPSKLGLMPGSYLTVEQAVLGLVTKSANDAACALGELMGG 205

Query: 154 SEK-KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
            ++ +FA LM+ +A+ +GM  T ++NASGL +  Q+T+ARD A+L   +   FP YY YF
Sbjct: 206 GDEGRFADLMTRQARALGMTRTTFRNASGLPNDEQVTSARDLALLTRQIITEFPDYYHYF 265

Query: 213 SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           S+  F +  R + NH+ +L      DG+KTGYT ++G N+VTS   ++  ++ VV+G  T
Sbjct: 266 SVPAFYFHGRQVPNHDPMLRIYPGADGLKTGYTTDAGRNLVTSAIRENVRLIGVVLGART 325

Query: 273 SQERDQKALELITSFLEKKTL 293
           + +R      ++     ++ +
Sbjct: 326 NPQRSAVMASILDDGFRQEGV 346


>gi|332799334|ref|YP_004460833.1| Serine-type D-Ala-D-Ala carboxypeptidase [Tepidanaerobacter sp.
           Re1]
 gi|332697069|gb|AEE91526.1| Serine-type D-Ala-D-Ala carboxypeptidase [Tepidanaerobacter sp.
           Re1]
          Length = 388

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 23/314 (7%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           + +   +LF+ I  ++ A +L  K   S+I++D     +   K   E   PAS+TK+MT+
Sbjct: 12  LLITLLMLFIIISPVAAAPQLDIKSP-SAILMDAGTGTILFEKNSHEKMEPASITKIMTM 70

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            I FE L+S K+ L+  + +S+ A     S+++L      T E  +  ++  SAND S A
Sbjct: 71  IIAFEALESGKVSLSDIVRISERAWGTGGSQVFLAPGEEQTLETLLKCIVIASANDASMA 130

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E I GS + F  LM++KAK++GM NT + N  GL      TTA D A++   L K +P
Sbjct: 131 VAEHIGGSVEGFVKLMNDKAKQLGMSNTNFVNPHGLSSPEHYTTAHDIALMSRELVK-YP 189

Query: 207 QYYKYFSIR----KFRYRNR---IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            ++ + +I     +   + R   ++ N NKLL K   +DG+KTG+   +G     + R  
Sbjct: 190 LFFNWSTIWIDYLEHTDKKRDATMLANTNKLLGKYEGLDGLKTGFHNKAGHCFAGTARRG 249

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLE-------------KKTLKHQQTHRKDNLSS 306
           D  +++VV+   TS +R +  ++L+                  +K L  ++ H ++    
Sbjct: 250 DFRLISVVLNADTSSQRFEDTVKLLDYGFGHFDSIKVVEKGSIQKILPVEKGHLENVNVI 309

Query: 307 TSLKKSLMIKKLKR 320
                SL+I+K K 
Sbjct: 310 VPEDVSLLIEKGKE 323


>gi|229013286|ref|ZP_04170427.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus mycoides DSM 2048]
 gi|229134885|ref|ZP_04263692.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus BDRD-ST196]
 gi|228648560|gb|EEL04588.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus BDRD-ST196]
 gi|228748053|gb|EEL97917.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus mycoides DSM 2048]
          Length = 385

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 89/298 (29%), Positives = 154/298 (51%), Gaps = 21/298 (7%)

Query: 34  ILFLSIIMISMA-------------SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           +L LS   +S A             +   A+   S+IVI+ +  ++   K  +E   PAS
Sbjct: 1   MLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFDKNPNEKLPPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MT+ +I E ++  KL LN ++  S+ AA+   S+++L+     T  + +  +   S
Sbjct: 61  MTKIMTMLLIMEQVEKGKLKLNDKVRASEHAASMGGSQIFLEPGEEMTVNEMLKGIAIAS 120

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND S A  E I+GSE+ F  +M+ KAK +G++NT ++N +GL  K+  +TA D AI+  
Sbjct: 121 GNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMAK 180

Query: 200 LLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
            L K +P   KY       +R+   +   + N NKL+     +DG+KTG+T  + + +  
Sbjct: 181 ELMK-YPLIRKYTGKYEDYLRENTDKKFWLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTA 239

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           S       +++VVMG PTS+ER+ +  +L+     +   K   T R + + +  + K 
Sbjct: 240 SAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYT-RGEKIKTVQVGKG 296


>gi|148256123|ref|YP_001240708.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp.
           BTAi1]
 gi|146408296|gb|ABQ36802.1| putative D-alanyl-D-alanine carboxypeptidase (Peptidase
           S11)(DD-carboxypeptidase) [Bradyrhizobium sp. BTAi1]
          Length = 590

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 118/240 (49%), Positives = 154/240 (64%), Gaps = 1/240 (0%)

Query: 52  PKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P ++SIV+D N   +      D  R+PASLTK+MTLY++FE L S K+ L+T++PVS+ A
Sbjct: 57  PAFASIVVDGNSGAVLTATNPDALRHPASLTKIMTLYLLFERLDSGKMKLDTEMPVSEHA 116

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           + Q+P+KL L+       E  I  L+TRSAND +    E I G E +FA +M+ KA+ +G
Sbjct: 117 SEQSPTKLGLRPGQTIRVEDAIKGLVTRSANDAAVVIAEAIGGDEDEFAKMMTRKARALG 176

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M  T Y NASGL    QITTARDQ+ILG  ++  FP+YY+YFS   F YR + I NHN L
Sbjct: 177 MSRTTYVNASGLPADEQITTARDQSILGRAIQDRFPRYYRYFSTVVFNYRGQSIRNHNHL 236

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L  +  IDGIKTGYTR SGFNIVTSLR  +  +V VV+G  +   RD     L+   LEK
Sbjct: 237 LGNVEGIDGIKTGYTRASGFNIVTSLRRGNRHLVGVVLGGRSGGSRDAIMRNLLAENLEK 296


>gi|261367341|ref|ZP_05980224.1| serine-type D-Ala-D-Ala carboxypeptidase [Subdoligranulum variabile
           DSM 15176]
 gi|282570101|gb|EFB75636.1| serine-type D-Ala-D-Ala carboxypeptidase [Subdoligranulum variabile
           DSM 15176]
          Length = 405

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 80/251 (31%), Positives = 131/251 (52%), Gaps = 3/251 (1%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           +    +     P  ++I++D +   +   K  DE R  AS+TK+MTL + F+ L+S+K+ 
Sbjct: 43  ITPAGTSEFDVPCEAAILVDEDSGTVLYEKNADEQRPIASITKVMTLLLTFQALESRKIS 102

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           L   +PVS+ A +   S+++L+     T    + A+   SAND + A  EF+ GSE  F 
Sbjct: 103 LEDNVPVSEHAYSMGGSQIWLEPGEQMTLNDMLKAICVSSANDAAVAVAEFVGGSEPAFV 162

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M+  A ++GM +T ++NA GL  +  +++ARD AI+   +  +  +   Y SI     
Sbjct: 163 QMMNETAAQLGMTSTHFENACGLDQEGHLSSARDVAIMSREMLLHHTEVRDYCSIWTDTL 222

Query: 220 RN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           RN    + N NKLL   + I G+KTG T  +G  I  S       ++AVV+G  + +ER 
Sbjct: 223 RNGATQLVNTNKLLKSYNGITGLKTGTTSKAGVCISASAERNGLRLIAVVLGSASGKERF 282

Query: 278 QKALELITSFL 288
           Q A  L+    
Sbjct: 283 QAATALLDYGF 293


>gi|330828593|ref|YP_004391545.1| Penicillin-binding protein [Aeromonas veronii B565]
 gi|328803729|gb|AEB48928.1| Penicillin-binding protein [Aeromonas veronii B565]
          Length = 398

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 81/255 (31%), Positives = 134/255 (52%), Gaps = 9/255 (3%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKL 98
           +++  A E+ AK     I+ID    Q+   +  E R  PASLTKMMT YII + L    +
Sbjct: 34  MVVPAAPEISAKAH---ILIDYYSGQVLAEQNAEERLPPASLTKMMTSYIIGQELLKGNI 90

Query: 99  HLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                + +S+ A ++N    SK++++     + +     +I +S ND   A  EF++GS 
Sbjct: 91  KRTDMVTISQNAWSKNYSDSSKMFIEVGKQVSVDDLNKGIIIQSGNDACVAMAEFLAGST 150

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             FA LM++ A K+GM ++ + N  GL  +   +TA D A LG  L ++ P+ YK +S +
Sbjct: 151 DSFASLMNSWAAKLGMNDSHFMNPHGLDAEGHYSTAHDMARLGQALIRDLPEEYKIYSQK 210

Query: 216 KFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYK-DDPIVAVVMGMPTS 273
            F +      N N+LL  +   +DGIKTG+    G+N+V+S        ++AVV+G  + 
Sbjct: 211 SFVFNGITQHNRNRLLWDQSLQVDGIKTGHVSQVGYNLVSSATNNEGMRLIAVVLGASSE 270

Query: 274 QERDQKALELITSFL 288
             R  ++ +L+T   
Sbjct: 271 ASRAAESKKLLTYGF 285


>gi|206579571|ref|YP_002237570.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae
           342]
 gi|206568629|gb|ACI10405.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae
           342]
          Length = 389

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 77/306 (25%), Positives = 137/306 (44%), Gaps = 15/306 (4%)

Query: 26  RNIQLMGKILFLSIIMISMA---SELHAKPKY---SSIVIDVNKNQMT-GFKQDEPRYPA 78
           +    +   L  S +  + A       A P     S +++D    Q+     + + R PA
Sbjct: 4   KGRLFIAVSLLASSVSCAFAVDFPATVAPPAIQAGSWVLMDYTTGQVLTAGNEHQQRNPA 63

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGI 132
           SLTK+MT Y++   + S ++  +  + V K A  +        S ++LK     +     
Sbjct: 64  SLTKLMTGYVVDRAIDSHRITFDDIVTVGKDAWAKGNPVFDGSSLMFLKPGDRVSVRDLS 123

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             LI  S ND   A  ++++G + +F  LM+   +K+ +++T ++   GL    Q ++A 
Sbjct: 124 RGLIVDSGNDACVALADYVAGGQPQFVALMNQYVEKLHLRDTHFETVHGLDAPGQHSSAY 183

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFN 251
           D A+L   +    P  Y  +S +   +      N N LL  K  N+DG+KTG+T  +GFN
Sbjct: 184 DLAVLSRAIIHGEPDVYHMYSQKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFN 243

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF-LEKKTLKHQQTHRKDNLSSTSLK 310
           ++ S       ++AVVMG  + + R+Q+A +L+        T++  Q  +K         
Sbjct: 244 LIASAVDGQRRLIAVVMGADSPKGREQQAAKLLHWGQQNFDTVQVLQKGQKVGTERIWYG 303

Query: 311 KSLMIK 316
               IK
Sbjct: 304 DKEQIK 309


>gi|322513157|ref|ZP_08066289.1| D-alanyl-D-alanine carboxypeptidase DacA [Actinobacillus ureae ATCC
           25976]
 gi|322121089|gb|EFX92912.1| D-alanyl-D-alanine carboxypeptidase DacA [Actinobacillus ureae ATCC
           25976]
          Length = 392

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 87/285 (30%), Positives = 152/285 (53%), Gaps = 21/285 (7%)

Query: 31  MGKILFLSIIMISMASELHAKP--------------KYSSIVIDVNKNQMTGF-KQDEPR 75
           M K LF S+ + ++A    A                  S I++D N   +      D+ +
Sbjct: 1   MKKTLFKSVGLCALAFSQFAVADANVDFGISAPQLNAQSYILMDYNSGNVLASLNPDQRQ 60

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGI 132
           YPASLTKMMT Y++ + L+  K+  +  + V++ +  Q     S ++L   T  + E  +
Sbjct: 61  YPASLTKMMTSYVVGDALKQGKVKNSDMVTVTENSWAQKFPGSSLMFLDLNTQVSVEDLM 120

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             LI  S ND + A  E  SGS++ F   M+  A++ G++NT +    GL + NQ ++AR
Sbjct: 121 RGLIIVSGNDAAVALAEHTSGSQQAFIDQMNKFAQQFGLKNTHFTTVHGLDEPNQYSSAR 180

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYR-NRIITNHNKLLN-KMHNIDGIKTGYTRNSGF 250
           D AI+G  + ++ P+ YK ++ ++F+Y   +   N N LL  K  N+DG+KTG+T  +G+
Sbjct: 181 DMAIIGAHIIRDQPEEYKIYAEKEFKYNIKKPQPNRNGLLWDKTMNVDGMKTGHTSQAGY 240

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLK 294
           N+V S    +  +++VVMG+ T + R+ ++ +L+       +T+K
Sbjct: 241 NLVASATNSNTRLISVVMGVGTYKGREVESKKLLQWGFANFETIK 285


>gi|229031719|ref|ZP_04187712.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH1271]
 gi|229071580|ref|ZP_04204798.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus F65185]
 gi|229081333|ref|ZP_04213836.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock4-2]
 gi|229180356|ref|ZP_04307699.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus 172560W]
 gi|228603103|gb|EEK60581.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus 172560W]
 gi|228701955|gb|EEL54438.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock4-2]
 gi|228711516|gb|EEL63473.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus F65185]
 gi|228729603|gb|EEL80590.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus AH1271]
          Length = 385

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 83/269 (30%), Positives = 145/269 (53%), Gaps = 8/269 (2%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 30  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 90  HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRI 223
           +G++NT ++N +GL  K+  +TA D AI+   L K +P   KY       +R+   +   
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFW 208

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +L
Sbjct: 209 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKL 268

Query: 284 ITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           +     +   K   T R + + +  + K 
Sbjct: 269 LDYAFGQYMTKKLYT-RGEKIKTVQVGKG 296


>gi|315127074|ref|YP_004069077.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Pseudoalteromonas sp. SM9913]
 gi|315015588|gb|ADT68926.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Pseudoalteromonas sp. SM9913]
          Length = 386

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 80/266 (30%), Positives = 135/266 (50%), Gaps = 8/266 (3%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGF-KQDEPRYPASLTKMMTL 86
           +  ++  + +  + A  + A P+ ++    ++D    ++    + D    PASLTKMMT 
Sbjct: 12  VCGLVCSAAVFSATAQIIPAPPQVNAKGYFLVDFTTGKVIAEGEADTKLAPASLTKMMTS 71

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDV 143
           Y+I   + +  +     + VS+ A  +N    SK++++     + +     +I +S ND 
Sbjct: 72  YVIGTEINAGNIAPTDMVTVSEKAWAKNFPESSKMFIEVGKQVSVDDLNHGIIIQSGNDA 131

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
             A  E I+GSE  FA LM+  A+KIGM NT + N+ GL      TT RD A LG  L +
Sbjct: 132 CVAMAEHIAGSESAFADLMNAHAEKIGMTNTHFVNSHGLDTDAHYTTPRDMATLGAALIR 191

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           + P  Y  +  + F +      N N LL     ++DGIKTG+T  +G+++VTS    D  
Sbjct: 192 DVPDEYALYKQKSFTFNGIKQYNRNSLLWDESLDVDGIKTGHTSEAGYSLVTSATKNDMR 251

Query: 263 IVAVVMGMPTSQERDQKALELITSFL 288
           ++AVVMG  + + R  ++ +L+    
Sbjct: 252 LIAVVMGTSSERARKVESKKLLNYGF 277


>gi|308069568|ref|YP_003871173.1| Penicillin-binding protein dacF precursor (D-alanyl-D-alanine
           carboxypeptidase) [Paenibacillus polymyxa E681]
 gi|305858847|gb|ADM70635.1| Penicillin-binding protein dacF precursor (D-alanyl-D-alanine
           carboxypeptidase) [Paenibacillus polymyxa E681]
          Length = 404

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 83/298 (27%), Positives = 152/298 (51%), Gaps = 10/298 (3%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A+EL A    S+I++D +   +   K   E   PAS+TK+MT+ +  E +Q  KL L  +
Sbjct: 46  AAEL-APEALSAILMDADTGTVIYEKNSREKLPPASITKIMTMLLTMEAIQDGKLKLTDK 104

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           +  S+ A++   S+++L+     T ++ +  +   S ND S A  E I+GSE+ F  +M+
Sbjct: 105 VRASEYASSMGGSQIFLEPGEEMTVDEMLKGIAMASGNDASVAMAEKIAGSEQAFVGMMN 164

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFR 218
            K +++G+++T + N +GL  +N  ++A D A++   L K +PQ  KY       +RK  
Sbjct: 165 AKVQQLGLKDTHFANCNGLPVENHYSSAHDIAVMSRELLK-YPQITKYTGAYQDYLRKSS 223

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
            +   + N NKL+      DG+KTGYT  + F +  + +     +VAVV+G P ++ R+ 
Sbjct: 224 VKPFWLVNTNKLVRFYTGADGLKTGYTAEAKFCLSATAKRDGLRVVAVVLGEPNTKIRNN 283

Query: 279 KALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
           +   +      + T+K       + L S  ++K + + +LK    +   +  K    +
Sbjct: 284 EVSSMFDYAFSQYTMKS-IYKPGELLGSVKVEKGV-LPELKIQADRSYSVLVKKGGNK 339


>gi|187922505|ref|YP_001894147.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia phytofirmans
           PsJN]
 gi|187713699|gb|ACD14923.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia phytofirmans
           PsJN]
          Length = 409

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 85/310 (27%), Positives = 166/310 (53%), Gaps = 15/310 (4%)

Query: 5   KIQSSAKKTFLTY-PYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP--KYSSIVIDV 61
           +  +S + +F +   +    + R + L G +L  +++  +  +++        S +++D 
Sbjct: 2   RFSTSGRTSFPSLASFVPSTLSRAVTL-GVVLPATLVASTAFAQVPPPAVNARSWVLVDA 60

Query: 62  NKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPSKL 118
             NQ+      DE   PASLTK+MT Y++FE LQ+KK++++  +  S+       + S++
Sbjct: 61  TSNQVLASGNPDERVEPASLTKLMTAYLVFEALQTKKINMDQTVMPSEAVRRVRTDESRM 120

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
           +++     T    +  +I +S ND + A  E + GSE +F  +M+N+A+K+GM+NT + +
Sbjct: 121 FIEANKPVTVHDLVYGMIIQSGNDAAIALAELVGGSESQFVNMMNNEAQKLGMKNTHFAD 180

Query: 179 ASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNID 238
            +G+ D    TTA D A+L   L ++FP YY  FS+++F Y      N N+LL     +D
Sbjct: 181 VNGMPDPQHYTTAGDLAVLSARLIRDFPDYYNIFSVKEFTYNKIKQPNRNRLLWIDPTVD 240

Query: 239 GIKTGYTRNSGFNIVTSLRYK-------DDPIVAVVMGMPTSQERDQKALELITSFLE-K 290
           G+KTG+T+ +G+ ++ S +            +V+V+MG     +R Q +L+++       
Sbjct: 241 GLKTGHTQAAGYCLIASAKRSLPGATDASRRLVSVMMGETKEHDRVQDSLKMLNYGYSAY 300

Query: 291 KTLKHQQTHR 300
            T++  + ++
Sbjct: 301 DTVRLYKANQ 310


>gi|310766969|gb|ADP11919.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Erwinia sp.
           Ejp617]
          Length = 411

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 82/276 (29%), Positives = 146/276 (52%), Gaps = 18/276 (6%)

Query: 31  MGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQ-DEPRYPASL 80
            G ++ LS+ +++ A +++ K            + ++ID N  ++   K  D  R PASL
Sbjct: 22  AGMLIALSLNVVAYADDVNIKTMIPGVPDIDAEAYVLIDYNSGKVLAEKNADARRDPASL 81

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILA 134
           TKMMT Y+I + +++ K+H +  + V K A        +  S ++LK        Q    
Sbjct: 82  TKMMTSYVIGQAIKAGKIHQDDMVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVSQLTRG 141

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           ++ +S ND   A  ++++GS++ F  LM+N  K +G+QNT ++   GL    Q ++ARD 
Sbjct: 142 IVLQSGNDACVAMADYVAGSQETFVGLMNNYVKALGLQNTHFQTVHGLDADGQYSSARDM 201

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIV 253
           A++G  L ++ P  Y  +  ++F + N    N N LL     N+DGIKTG+T ++G+N+V
Sbjct: 202 ALIGRALIRDVPDEYAVYHEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTESAGYNLV 261

Query: 254 TSLRYK-DDPIVAVVMGMPTSQERDQKALELITSFL 288
            S        +++ VMG  T + R+ ++ +L+T   
Sbjct: 262 ASATEGQQMRLISTVMGGHTYKGRETESKKLLTWGF 297


>gi|261212803|ref|ZP_05927087.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC341]
 gi|260837868|gb|EEX64545.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC341]
          Length = 378

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 83/318 (26%), Positives = 153/318 (48%), Gaps = 17/318 (5%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTL 86
           +  M  +  L    +++  E         ++ID +  ++           PASLTK+MT 
Sbjct: 1   MACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPASLTKLMTS 60

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSANDV 143
           Y+  + ++   +H + Q+ +S  A  +   + SK++++  TY         LI +S ND 
Sbjct: 61  YVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLIVQSGNDA 120

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           S A  E ++GSE  F  LM++ A ++GM N+ + N  GL + N  +T  D A+LG  + +
Sbjct: 121 SVAIAEHVAGSEGAFVSLMNSWALQLGMNNSSFANPHGLDNPNLYSTPYDIALLGQAIIR 180

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           + P+ Y  +S   F Y      N N LL  +  N+DG+KTGYT  +G+++ +S    +  
Sbjct: 181 DLPEIYTLYSEPSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYSLASSATSGEMR 240

Query: 263 IVAVVMGMPTSQERDQKALELIT---SFLEK-------KTLKHQQTHRKDNLSSTSLKKS 312
           +++VVMG  + + R+ ++ +L++    F E          ++ Q+    +        K 
Sbjct: 241 LISVVMGAKSVKIREAESKQLLSYGFRFFETVSPHQKDSVVQSQRIWYGNKNEVALGSKE 300

Query: 313 LMIKKLKRTYSQFKKIDA 330
            +   L R  +  KK++A
Sbjct: 301 TVYLTLPR--NDVKKLNA 316


>gi|222148621|ref|YP_002549578.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
           [Agrobacterium vitis S4]
 gi|221735607|gb|ACM36570.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
           [Agrobacterium vitis S4]
          Length = 484

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 123/278 (44%), Positives = 188/278 (67%), Gaps = 1/278 (0%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASL 80
           + ++  +++   +  +   +++ A E  A  +Y+ IV+DVN  ++      D  RYPASL
Sbjct: 11  MIVRPVMRVSLTVALVCATLVAPAPEAAAASRYADIVVDVNNGKVLRATDADSLRYPASL 70

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           TKMMTLY++FE L+  ++ LN+ +PVS  AA++ PSKL L+    FT EQGI AL+TRSA
Sbjct: 71  TKMMTLYLVFEALEKGRIRLNSSVPVSAHAASEPPSKLGLRPGGSFTVEQGIQALVTRSA 130

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND +TAFGE++ GSE +FA +M++KA+ +GM  T Y+NA+GL +  Q+TTARDQA LG+ 
Sbjct: 131 NDAATAFGEYLGGSEARFAQMMTSKARALGMSRTTYRNANGLPNSGQMTTARDQARLGMA 190

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           LR++FPQYY YFS R F Y  ++I NHN+L+  +  +DGIKTG+T  SGFN+VTSL+   
Sbjct: 191 LRQHFPQYYAYFSTRSFTYGRQVIGNHNRLIGSVRGVDGIKTGFTNASGFNLVTSLQIDG 250

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
             +V VV+G  +   RD +  +L+ +++ + + +   +
Sbjct: 251 KSVVGVVLGGASGAARDNQMRKLMATYVPEASRRGGAS 288


>gi|167909308|ref|ZP_02496399.1| penicillin-binding protein 6 [Burkholderia pseudomallei 112]
          Length = 379

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 85/310 (27%), Positives = 154/310 (49%), Gaps = 21/310 (6%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  A         S +++D + NQ+      DE   PASLTK+MT Y++FE L +KK+ +
Sbjct: 11  VPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 70

Query: 101 NTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
              +  S+      ++ S+++++     +    +  +I +S ND + A  E + GSE +F
Sbjct: 71  EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 130

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+ +A+++GM++T + + +G+ D N  TTA D A L   L +++P YY  FS+++F 
Sbjct: 131 VNMMNAEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFT 190

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMP 271
           Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +            +V V+MG  
Sbjct: 191 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGET 250

Query: 272 TSQERDQKALELI----TSFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKKLKR 320
              +R Q +++++    T+F   +  K  Q          K N     +KK   I   + 
Sbjct: 251 KESDRVQDSMKMLNYGYTAFDSVRLYKASQPIDTPRVYKGKSNNVQVGVKKDQFITVPRG 310

Query: 321 TYSQFKKIDA 330
              + K   A
Sbjct: 311 LADKVKPEVA 320


>gi|152971007|ref|YP_001336116.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238895589|ref|YP_002920324.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330000619|ref|ZP_08303760.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3]
 gi|150955856|gb|ABR77886.1| DD-carboxypeptidase, penicillin-binding protein 6b [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238547906|dbj|BAH64257.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|328537943|gb|EGF64124.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3]
          Length = 389

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 78/306 (25%), Positives = 139/306 (45%), Gaps = 15/306 (4%)

Query: 26  RNIQLMGKILFLSIIMISMASELHA---KPKY---SSIVIDVNKNQMT-GFKQDEPRYPA 78
           +    +   L  S +  + A +L A    P     S +++D    Q+     + + R PA
Sbjct: 4   KGRLFIAVSLLASSVSCAFAVDLPATVAPPSIQAGSWVLMDYTTGQVLTAGNEHQQRNPA 63

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGI 132
           SLTK+MT Y++   + S ++  +  + V K A  +        S ++LK     +     
Sbjct: 64  SLTKLMTGYVVDRAIDSHRITFDDIVTVGKDAWAKGNPVFDGSSLMFLKPGDRVSVRDLS 123

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             LI  S ND   A  ++++G + +F  LM+   +K+ +++T ++   GL    Q ++A 
Sbjct: 124 RGLIVDSGNDACVALADYVAGGQPQFVALMNQYVEKLHLRDTHFETVHGLDAPGQHSSAY 183

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFN 251
           D A+L   +    P  Y  +S +   +      N N LL  K  N+DG+KTG+T  +GFN
Sbjct: 184 DLAVLSRAIIHGEPDVYHMYSQKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFN 243

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF-LEKKTLKHQQTHRKDNLSSTSLK 310
           ++ S       ++AVVMG  + + R+Q+A +L+        T++  Q  +K         
Sbjct: 244 LIASAVDGQRRLIAVVMGADSPKGREQQAAKLLHWGQQNFDTVQVLQKGQKVGTERIWYG 303

Query: 311 KSLMIK 316
               IK
Sbjct: 304 DKEQIK 309


>gi|83718804|ref|YP_440938.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis E264]
 gi|257140407|ref|ZP_05588669.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis E264]
 gi|83652629|gb|ABC36692.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis E264]
          Length = 436

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 87/312 (27%), Positives = 155/312 (49%), Gaps = 24/312 (7%)

Query: 43  SMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKL 98
           + A      P     S +++D + NQ+      DE   PASLTK+MT Y++FE L +KK+
Sbjct: 66  TYAPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKI 125

Query: 99  HLNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
            +   +  S+      ++ S+++++     +    +  +I +S ND + A  E + GSE 
Sbjct: 126 TMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEA 185

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
           +F  +M+ +A+++GM+NT + + +G+ D N  TTA D A L   L +++P YY  FS+++
Sbjct: 186 QFVNMMNAEAQRLGMKNTHFADVNGMPDPNHYTTAGDLATLSTHLIRDYPDYYNIFSVKE 245

Query: 217 FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK-------DDPIVAVVMG 269
           F Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +            +V V+MG
Sbjct: 246 FTYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRSLPGAADATRRLVTVMMG 305

Query: 270 MPTSQERDQKALELI----TSFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKKL 318
                +R Q +++++    T+F   +  K  Q          K N     +KK   I   
Sbjct: 306 ETKESDRVQDSMKMLNYGYTAFDSVRLYKAGQPIDTPRVYKGKSNNVQVGVKKDQFITVP 365

Query: 319 KRTYSQFKKIDA 330
           +    + K   A
Sbjct: 366 RGLADKVKPEVA 377


>gi|288934486|ref|YP_003438545.1| beta-lactamase [Klebsiella variicola At-22]
 gi|290508688|ref|ZP_06548059.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55]
 gi|288889195|gb|ADC57513.1| Beta-lactamase [Klebsiella variicola At-22]
 gi|289778082|gb|EFD86079.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55]
          Length = 387

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 78/306 (25%), Positives = 137/306 (44%), Gaps = 15/306 (4%)

Query: 26  RNIQLMGKILFLSIIMISMA---SELHAKPKY---SSIVIDVNKNQMT-GFKQDEPRYPA 78
           +    +   L  S +  + A       A P     S +++D    Q+     + + R PA
Sbjct: 2   KGRLFIAVSLLASSVSCAFAVDFPATVAPPAIQAGSWVLMDYTTGQVLTAGNEHQQRNPA 61

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN------PSKLYLKEKTYFTTEQGI 132
           SLTK+MT Y++   + S ++  +  + V K A  +        S ++LK     +     
Sbjct: 62  SLTKLMTGYVVDRAIDSHRITFDDIVTVGKDAWAKGNPVFDGSSLMFLKPGDRVSVRDLS 121

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             LI  S ND   A  ++++G + +F  LM+   +K+ +Q+T ++   GL    Q ++A 
Sbjct: 122 RGLIVDSGNDACVALADYVAGGQPQFVALMNQYVEKLHLQDTHFETVHGLDAPGQHSSAY 181

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFN 251
           D A+L   +    P  Y  +S +   +      N N LL  K  N+DG+KTG+T  +GFN
Sbjct: 182 DLAVLSRAIIHGEPDVYHMYSQKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFN 241

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF-LEKKTLKHQQTHRKDNLSSTSLK 310
           ++ S       ++AVVMG  + + R+Q+A +L+        T++  Q  +K         
Sbjct: 242 LIASAVDGQRRLIAVVMGADSPKGREQQAAKLLHWGQQNFDTVQVLQKGQKVGTERIWYG 301

Query: 311 KSLMIK 316
               IK
Sbjct: 302 DKEQIK 307


>gi|307130748|ref|YP_003882764.1| D-alanyl-D-alanine carboxypeptidase [Dickeya dadantii 3937]
 gi|306528277|gb|ADM98207.1| D-alanyl-D-alanine carboxypeptidase [Dickeya dadantii 3937]
          Length = 399

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 77/280 (27%), Positives = 134/280 (47%), Gaps = 11/280 (3%)

Query: 17  YPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPR 75
             +G + +     LM     L         ++ AK   + I+ID    ++      D   
Sbjct: 5   ISWGRVVVAAATALMTVSPGLRAEQTPPPPQIEAK---AFILIDYASGRVLAESNADARL 61

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTE 129
            PASLTK+M+ Y+I + ++  K+    ++ V K A        +  S ++LK        
Sbjct: 62  DPASLTKIMSSYVIGQAIKVGKITPEDKVTVGKDAWATGNPALRGSSLMFLKPGDQIPVS 121

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           +    ++ +S ND S A  ++++GS+  F  LM+  A  +G+ NT +    GL    Q +
Sbjct: 122 ELNKGMVIQSGNDASIALADYVAGSQDAFVSLMNQYAATLGLANTHFLTVHGLDTPGQYS 181

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNS 248
           TARD A L   L ++ P  Y   S ++F + N    N N+LL   +  +DG+KTGYT  +
Sbjct: 182 TARDMARLTQALIRDVPGEYALHSEKEFTFNNIRQPNRNRLLWSGNLRVDGVKTGYTGGA 241

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           G ++V S    D  +++VV+G P+   R +++ +L+T   
Sbjct: 242 GHSLVASAVDSDMRLISVVLGAPSDAVRFRESEKLLTWGF 281


>gi|219871407|ref|YP_002475782.1| D-alanyl-D-alanine carboxypeptidase fraction A/penicillin-binding
           protein 5 [Haemophilus parasuis SH0165]
 gi|219691611|gb|ACL32834.1| D-alanyl-D-alanine carboxypeptidase fraction A/penicillin-binding
           protein 5 [Haemophilus parasuis SH0165]
          Length = 393

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 84/257 (32%), Positives = 142/257 (55%), Gaps = 9/257 (3%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
            A +L+A+   + I++D N   +      D+ + PASLTKMMT Y++ E L++ K+  + 
Sbjct: 33  AAPQLNAQ---TYILMDYNSGAVLASLNPDQRQAPASLTKMMTSYVVGEALKTGKIKNSD 89

Query: 103 QIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            + V++ +  Q     SK++L      + E     +I  S ND   A  E ISGSE+ F 
Sbjct: 90  LVTVTENSWGQKFPGSSKMFLNVNQQVSVEDLNKGIIVVSGNDACVAIAEHISGSEQTFI 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             M+   +K G++NT +    GL    Q ++ARD AI+G  + ++ P+ YK +S ++F Y
Sbjct: 150 DSMNKFVQKFGLKNTHFATVHGLDHPEQYSSARDMAIIGAHIIRDLPEEYKIYSEKEFTY 209

Query: 220 RNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL  K  N+DG+KTG+T  +G+N+V S    +  +++VVMG+PT + R+ 
Sbjct: 210 NKITQPNRNGLLWDKSINVDGMKTGHTDQAGYNLVASAYNSNTRLISVVMGVPTYKGREV 269

Query: 279 KALELITSFL-EKKTLK 294
           ++ +L+       +T+K
Sbjct: 270 ESKKLLQWGFANFETVK 286


>gi|323524598|ref|YP_004226751.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp.
           CCGE1001]
 gi|323381600|gb|ADX53691.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp.
           CCGE1001]
          Length = 409

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 85/327 (25%), Positives = 161/327 (49%), Gaps = 24/327 (7%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP--KYSSIVIDVNKNQMTGF-KQDEPRYPASL 80
           + R I L G +L  ++   +  +++        S +++D   NQ+      DE   PASL
Sbjct: 22  LSRAITL-GVVLPATLAASTAFAQVPPPAVNARSWVLVDATSNQVLASGNPDERVEPASL 80

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITR 138
           TK+MT Y++FE LQ+KK+ ++  +  S+       + S+++++     T    +  +I +
Sbjct: 81  TKLMTAYLVFEALQTKKIAMDQTVTPSEAVRRVRTDESRMFVEANKPVTVHDLVYGMIVQ 140

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND + A  E + GSE +F  +M+ +A+++GM +T + + +G+ D    TTA D A+L 
Sbjct: 141 SGNDAAIALAELVGGSEAQFVNMMNTEAQRLGMTHTHFADVNGMPDPQHYTTAGDLAVLS 200

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             L ++FP YY  FS+++F Y      N N+LL     +DG+KTG+T+ +G+ ++ S + 
Sbjct: 201 ARLIRDFPDYYNIFSVKEFTYNKIKQPNRNRLLWIDPTVDGLKTGHTQAAGYCLIASAKR 260

Query: 259 K-------DDPIVAVVMGMPTSQERDQKALELITSFLE-KKTLKHQQTHRK--------- 301
                      +V+V+MG     +R Q +L+++        T++  + ++          
Sbjct: 261 SLPGTPDASRRLVSVMMGETKEHDRVQDSLKMLNYGYSAYDTVRLYKANQVVGTPRVYKG 320

Query: 302 -DNLSSTSLKKSLMIKKLKRTYSQFKK 327
             +     +K    I   K    + K 
Sbjct: 321 AQDSVQIGVKSDQYITVPKGMADKVKP 347


>gi|327393100|dbj|BAK10522.1| penicillin-binding protein 5 precursor DacA [Pantoea ananatis
           AJ13355]
          Length = 410

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 79/275 (28%), Positives = 145/275 (52%), Gaps = 17/275 (6%)

Query: 31  MGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQ-DEPRYPASL 80
           +G ++  S+   ++A +++ K            + ++ID N  ++   K  D  R PASL
Sbjct: 22  VGSLIAFSLSHAAIADDVNLKTMIPGVPDIDAEAYVLIDYNSGKVLAEKNADARRDPASL 81

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILA 134
           TKMMT Y+I + +++ K+H +  + V + A        +  S ++LK        Q    
Sbjct: 82  TKMMTSYVIGQAVKAGKIHQDDIVTVGQDAWATGNPVFKGSSLMFLKPGDRVPVSQLTRG 141

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           ++ +S ND   A  ++++GS+  F  LM+N  K +G+QNT ++   GL  + Q ++ARD 
Sbjct: 142 IVLQSGNDACVAMADYVAGSQDAFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYSSARDM 201

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIV 253
           A++G  L ++ P+ Y  +  ++F + N    N N LL      +DGIKTG+T ++G+N+V
Sbjct: 202 ALIGQALIRDVPEEYAVYKEKEFTFNNIRQMNRNGLLWDTSLTVDGIKTGHTASAGYNLV 261

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            S       +++ VMG  T + R+ ++ +L+T   
Sbjct: 262 ASATEGQMRLISAVMGGHTFKGRETESKKLLTWGF 296


>gi|298291483|ref|YP_003693422.1| serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506]
 gi|296927994|gb|ADH88803.1| Serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506]
          Length = 570

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 112/264 (42%), Positives = 167/264 (63%), Gaps = 1/264 (0%)

Query: 54  YSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           YS I+ID N  ++   +  D  R+PAS+TK+MTLY++FE LQ+ K+ LNT + VS  AA+
Sbjct: 59  YSDIIIDANTGRILHEQNADALRHPASVTKVMTLYLLFEQLQAGKMRLNTPLRVSAYAAS 118

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           Q PSKL +K  +    E  I ALITRSANDV+    E ISG    FA LM+ +A+++GM 
Sbjct: 119 QQPSKLGVKPGSTIVVEDAIQALITRSANDVAVVVAENISGDASTFAALMTRRARQLGMS 178

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
            T ++N +GL +  Q+TTARD A LG  +++ FP+YY YF  R F YR + I NHN++  
Sbjct: 179 RTTFRNPNGLPNPQQVTTARDLATLGRAIQERFPKYYAYFETRSFMYRGQAIRNHNRMFG 238

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +++ +DGIKTGYT  SGFN++TS++     ++ VVMG  ++  RD + + L++  + K  
Sbjct: 239 RINGVDGIKTGYTNASGFNLLTSVKQNGRYVIGVVMGGASAASRDNRMVALLSDAMPKSY 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIK 316
              QQ  R D++ S +    ++  
Sbjct: 299 AGRQQVARMDSVPSGAADDDVVTP 322


>gi|260438046|ref|ZP_05791862.1| serine-type D-Ala-D-Ala carboxypeptidase [Butyrivibrio crossotus
           DSM 2876]
 gi|292809525|gb|EFF68730.1| serine-type D-Ala-D-Ala carboxypeptidase [Butyrivibrio crossotus
           DSM 2876]
          Length = 385

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 148/304 (48%), Gaps = 12/304 (3%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           ++  IL LS   IS+ ++  +    S+I+++ +  ++      DE   PAS+TK+MTL +
Sbjct: 8   IISFILILSSAHISVTADELSLTSKSAILMEASTGKIIYEHNPDEILRPASITKIMTLIL 67

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           IF+ +   ++ ++  + VS+ AA+   S+++L+     T E  I  +   SAND   A  
Sbjct: 68  IFDAIHDGRIKMDDTVTVSEHAASMGGSQVFLEAGETQTVETLIKCIAIASANDACVAMA 127

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E+I  SE+ F   M+ +AK + M NT + N  GL   N +TTARD A++   L   +P+ 
Sbjct: 128 EYIDTSEENFVAHMNERAKGLSMTNTNFVNCCGLDADNHVTTARDVALMSKELINKYPEI 187

Query: 209 YKYFSIRKFRYR--------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           +   +I              +  +TN NKL+ +     G+KTG T  +GF +  + +  D
Sbjct: 188 HNISTIWMDTITHVTRRGESDFTLTNTNKLIKQYEWATGLKTGSTSLAGFCLSATAKRND 247

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKR 320
             +++VVM     + R   +++L+        +         N+ S  +    MIK+L  
Sbjct: 248 IELISVVMASKDGKSRVADSIKLLNYGYSLCQMYKDSN--MPNIPSPGISGG-MIKELDC 304

Query: 321 TYSQ 324
            YS 
Sbjct: 305 EYSD 308


>gi|270262090|ref|ZP_06190362.1| D-alanyl-D-alanine carboxypeptidase [Serratia odorifera 4Rx13]
 gi|270043966|gb|EFA17058.1| D-alanyl-D-alanine carboxypeptidase [Serratia odorifera 4Rx13]
          Length = 389

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 91/330 (27%), Positives = 152/330 (46%), Gaps = 26/330 (7%)

Query: 24  IQRNI-QLMGKILFLSIIMISMAS------ELHAKPKYSSIVIDVNKNQMTGFKQ-DEPR 75
           ++R++  +M  +L    +  + A          A    S +++D    Q+      DE R
Sbjct: 1   MKRSVLSVMTGVLLPLAVQAADAPLSFPLNTPPAIDAASYVLMDYTTGQVLAENNADERR 60

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN------PSKLYLKEKTYFTTE 129
            PASLTK+MT  +I   L   K+ L+  + V K A  Q        S ++LK     T  
Sbjct: 61  NPASLTKLMTGLVIDHALDQHKIGLDDVVTVGKDAWAQGNPVFKGSSLMFLKPGDRVTVR 120

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
                +I  S ND   A  ++++GS+  F  LM+ K+ ++G+QNT ++   GL    Q T
Sbjct: 121 DLSRGIIIDSGNDACVAMADYVAGSQAAFVKLMNEKSTQLGLQNTHFETVHGLDAPGQFT 180

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNS 248
           TA D A++   +  + P  Y  +S +   +      N N LL  K   +DG+KTG+T ++
Sbjct: 181 TAGDLAVISRAIIMSEPAEYHMYSEKSLSWNGITQQNRNGLLWDKNLRVDGLKTGHTASA 240

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK----------KTLKHQQT 298
           GFNI+ S    D  ++AVVMG  +++ R+ +A +L+T  L            +TL  ++ 
Sbjct: 241 GFNIIASATEGDRRLIAVVMGGKSAKGREDQARKLLTWGLRDFATVHLFSAGQTLGQEKV 300

Query: 299 HRKDN-LSSTSLKKSLMIKKLKRTYSQFKK 327
              D  L     ++   +   KR   + K 
Sbjct: 301 WYGDRHLVPVGSEQDQYLSLPKREADKLKA 330


>gi|146341457|ref|YP_001206505.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp.
           ORS278]
 gi|146194263|emb|CAL78285.1| putative D-alanyl-D-alanine carboxypeptidase (Peptidase
           S11)(DD-carboxypeptidase) [Bradyrhizobium sp. ORS278]
          Length = 586

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 119/244 (48%), Positives = 154/244 (63%), Gaps = 1/244 (0%)

Query: 52  PKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P ++SIV+D N          D  R+PASLTK+MTLY++FE L S K+ L+T++PVS+ A
Sbjct: 56  PAFASIVVDGNSGATLTATNPDALRHPASLTKIMTLYLLFERLDSGKMKLDTEMPVSEHA 115

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           + Q+P+KL L+       E  I  L+TRSAND +    E I G E +FA +M+ KA+ +G
Sbjct: 116 SEQSPTKLGLRPGQTIRVEDAIKGLVTRSANDAAVVIAEAIGGDEDEFAKMMTRKARSLG 175

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M  T Y NASGL    QITTARDQ+ILG  ++  FP+YY+YFS   F YR + I NHN L
Sbjct: 176 MSRTTYVNASGLPADEQITTARDQSILGRAIQDRFPRYYRYFSTVVFNYRGQSIRNHNHL 235

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L  +  IDGIKTGYTR SGFNIVTSLR  +  +V VV+G  +   RD     L+   LEK
Sbjct: 236 LGNVEGIDGIKTGYTRASGFNIVTSLRRGNRHLVGVVLGGRSGGSRDAIMRNLLAENLEK 295

Query: 291 KTLK 294
              K
Sbjct: 296 GATK 299


>gi|89056340|ref|YP_511791.1| Serine-type D-Ala-D-Ala carboxypeptidase [Jannaschia sp. CCS1]
 gi|88865889|gb|ABD56766.1| Serine-type D-Ala-D-Ala carboxypeptidase [Jannaschia sp. CCS1]
          Length = 468

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 99/264 (37%), Positives = 148/264 (56%), Gaps = 2/264 (0%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           L   +L + I+  ++A        Y+++V+D    ++   +  D   +PASLTKMMTLYI
Sbjct: 6   LFVALLGVQILFGAVAPAQVNAAPYAAMVMDARNGEVLHSRNADTRLHPASLTKMMTLYI 65

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            FE ++  ++ L+T++ VS  AA + PS+L L   T       + A   RS ND +TA G
Sbjct: 66  AFEAIRLGEITLDTEVTVSANAAAEPPSRLGLSAGTTIRLRYLLRAAAIRSGNDAATAIG 125

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E ISGSE  FA  M+  A+ +GM  T ++NA GL +   ++TARD  +LG  L  ++PQY
Sbjct: 126 EAISGSEAAFARRMTRTARALGMTRTTFRNAHGLTEDGHLSTARDMTMLGRRLVYDYPQY 185

Query: 209 YKYFSIRKFRYRNRIITNHNK-LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           Y  FS          I N N+ +L      DGIKTGYTR +GFN+V S +  ++ I+A V
Sbjct: 186 YNLFSRVTADAGIATIRNTNRVVLTTYRGADGIKTGYTRAAGFNLVASAQRGEERIIATV 245

Query: 268 MGMPTSQERDQKALELITSFLEKK 291
            G  +S  R+Q+ +EL+    E+ 
Sbjct: 246 FGGRSSAWRNQRVMELLDMGFERA 269


>gi|83858300|ref|ZP_00951822.1| penicillin binding protein [Oceanicaulis alexandrii HTCC2633]
 gi|83853123|gb|EAP90975.1| penicillin binding protein [Oceanicaulis alexandrii HTCC2633]
          Length = 399

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 74/279 (26%), Positives = 142/279 (50%), Gaps = 7/279 (2%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPA 78
           G++ ++R + L+  ++ +S+   +MA          ++++D     +   K  +EP  PA
Sbjct: 15  GTLIMRRLLCLLA-LITVSLSPSAMAQSAFDTRASHAVILDYESGDVLFSKNGEEPMPPA 73

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGIL 133
           S++K+MT  ++FE L+  +  L+T +PVS+ A  +       S ++L   +       I 
Sbjct: 74  SMSKLMTALMVFEALEDGRFTLDTSLPVSENAWRRGGAASGSSTMFLDVNSRAEVGDLIR 133

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND      E + G+E+ FA +M+ +A ++G+++  + NA+G  D +   +A D
Sbjct: 134 GIIVQSGNDACIVVAEALGGTEENFAQMMTERAHELGLESASFANATGWPDPDHRISALD 193

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            A L   + + +PQYY  +S  +F Y      N N LL      DG+KTG+T  SG+ +V
Sbjct: 194 LARLARHIIETYPQYYDIYSETEFTYNGIRQYNRNPLLGVFDGADGLKTGHTEESGYGLV 253

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
            S     +  + V  GM +++ R  ++  L+ +   + +
Sbjct: 254 ASAERDGERRIVVFNGMDSNRARADESERLMRAAFSEFS 292


>gi|134297080|ref|YP_001120815.1| penicillin-binding protein 6 [Burkholderia vietnamiensis G4]
 gi|134140237|gb|ABO55980.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Burkholderia vietnamiensis G4]
          Length = 437

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 76/257 (29%), Positives = 137/257 (53%), Gaps = 9/257 (3%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
            +  A         S +++D   N +      DE   PASLTK+MT Y++FE L  KK+ 
Sbjct: 69  FMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKIS 128

Query: 100 LNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           +   +  S+      ++ S+++++     +    +  +I +S ND + A  E + GSE +
Sbjct: 129 MEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQ 188

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F  LM+++A+++GM+ T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F
Sbjct: 189 FVTLMNDEAQRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEF 248

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY------KDDPIVAVVMGMP 271
           +Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +           +V+V+MG P
Sbjct: 249 KYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEP 308

Query: 272 TSQERDQKALELITSFL 288
              +R   +++++    
Sbjct: 309 KEGDRTADSMKMLNYGY 325


>gi|270263700|ref|ZP_06191969.1| hypothetical protein SOD_e03250 [Serratia odorifera 4Rx13]
 gi|270042584|gb|EFA15679.1| hypothetical protein SOD_e03250 [Serratia odorifera 4Rx13]
          Length = 428

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 142/298 (47%), Gaps = 22/298 (7%)

Query: 13  TFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP--------------KYSSIV 58
           T +      +    + +L+  I   S+I +S AS   A                  + ++
Sbjct: 17  TLMDVVLSIMKQVTSFRLIKSIALGSVIAMSAASVAQADDVNIKTMIPGVPQIDAEAYVL 76

Query: 59  IDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----- 112
           ID N  ++      D  R PASLTKMMT Y+I + L++ K+     + V + A       
Sbjct: 77  IDYNSGKVLAEMNADARRDPASLTKMMTSYVIGQALKAGKIGPEDMVTVGQDAWATGNPV 136

Query: 113 -QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            +  S ++LK        +    +  +S ND   A  ++++GS+  F  LM+    K+G+
Sbjct: 137 FKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDAFVNLMNTYVSKLGL 196

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           QNT ++   GL  + Q ++ARD A++G  L ++ P  Y  +  ++F + N    N N LL
Sbjct: 197 QNTHFQTVHGLDAQGQYSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQMNRNGLL 256

Query: 232 NKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
                N+DGIKTG+T  +G+N+V S       +++ V+G  T + R+ ++ +L+T   
Sbjct: 257 WDTSLNVDGIKTGHTDAAGYNLVASATEGQMRLISAVLGGRTYKGRETESKKLLTWGF 314


>gi|242238535|ref|YP_002986716.1| D-alanyl-D-alanine carboxypeptidase fraction A [Dickeya dadantii
           Ech703]
 gi|242130592|gb|ACS84894.1| Beta-lactamase [Dickeya dadantii Ech703]
          Length = 403

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 85/291 (29%), Positives = 148/291 (50%), Gaps = 19/291 (6%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASEL------HAKP---KYSSIVIDVNKNQ 65
           +     S + +R +  +G +L L +   S A ++       A P     + I+ID N  +
Sbjct: 1   MNRVITSRFTKRIV--LGTLLVLGVSAFSHAEDINLKTMIPAVPDIDAEAYILIDYNSGK 58

Query: 66  MTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKL 118
           +   K  D  R PASLTKMMT Y+I + +++ K++ N  + + K A        Q  S +
Sbjct: 59  VLAEKNADVRRNPASLTKMMTSYVIGQAIKAGKINPNDIVTIGKDAWATGNPDFQGSSLM 118

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
           +LK             +I +S ND   A  ++++GS+  F  LM+   K +G+QNT +K 
Sbjct: 119 FLKPGDRVPVHMLNKGIILQSGNDACVAMADYVAGSQDAFISLMNGYVKSLGLQNTQFKT 178

Query: 179 ASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NI 237
             GL  + Q ++ARD A++G  L ++ P  Y  +  ++F + N    N N LL     ++
Sbjct: 179 VHGLDAEGQYSSARDMALIGQALIRDVPNEYATYKEKEFTFNNIRQMNRNGLLWDSSLSV 238

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           DGIKTG+T ++G+N+V S       +++ V+G  T + R+ ++ +L+T   
Sbjct: 239 DGIKTGHTASAGYNLVASATEGQMRLISAVLGGRTFKGRESESKKLLTWGF 289


>gi|296103671|ref|YP_003613817.1| D-alanyl-D-alanine carboxypeptidase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058130|gb|ADF62868.1| D-alanyl-D-alanine carboxypeptidase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 388

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 66/257 (25%), Positives = 127/257 (49%), Gaps = 8/257 (3%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  + +  A    S +++D    Q+     + + R PASLTK+MT Y++   + S ++  
Sbjct: 25  LDFSPQPPAIQAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISP 84

Query: 101 NTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
           +  + V + A  +        S ++LKE    +       LI  S ND   A  + ++G 
Sbjct: 85  DDIVTVGRDAWAKGNPVFDGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADHVAGG 144

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           + +F  +M++  +K+ +++T ++   GL    Q ++A D A+L   +    P++Y  +S 
Sbjct: 145 QPQFVKMMNDYVQKLNLRDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSE 204

Query: 215 RKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           +   +      N N LL  K  N+DG+KTG+T  +GFN++ S       ++AVVMG  + 
Sbjct: 205 KSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASTVDGQRRLIAVVMGADSP 264

Query: 274 QERDQKALELITSFLEK 290
           + R+ +A +L+    + 
Sbjct: 265 KGREDQARKLLHWGQQN 281


>gi|229163014|ref|ZP_04290970.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus R309803]
 gi|228620420|gb|EEK77290.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus R309803]
          Length = 385

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 83/269 (30%), Positives = 145/269 (53%), Gaps = 8/269 (2%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 30  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 90  HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRI 223
           +G++NT ++N +GL  K+  +TA D AI+   L K +P   KY       +R+   +   
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFW 208

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +L
Sbjct: 209 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKL 268

Query: 284 ITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           +     +   K   T R + + +  + K 
Sbjct: 269 LDYAFGQYMTKKMYT-RGEKIKTVQVGKG 296


>gi|332289415|ref|YP_004420267.1| D-alanyl-D-alanine carboxypeptidase fraction A [Gallibacterium
           anatis UMN179]
 gi|330432311|gb|AEC17370.1| D-alanyl-D-alanine carboxypeptidase fraction A [Gallibacterium
           anatis UMN179]
          Length = 394

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 151/279 (54%), Gaps = 11/279 (3%)

Query: 21  SIYIQRNIQLM-GKILFLSIIMISMASELH--AKPKYSS---IVIDVNKNQMTGF-KQDE 73
           S+Y ++  +L    +L  S I ++ A  L+  A P+ ++   I++D N   +      D+
Sbjct: 2   SLYSKKLKKLAFAGLLGFSSISVAFAEGLYDIAPPQINAQTYILMDYNSGAVLAALNPDQ 61

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQ 130
             YPASLTKMMT Y+I + L+  ++H    + + + +  +N    SK++L      +   
Sbjct: 62  KHYPASLTKMMTSYVIGQALKEGRIHNTDMVTIDEESWGKNFPGSSKMFLNVNQQVSVAD 121

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               +I  S ND   A  ++++GS+  F  +M+    + G++NT ++   GL  +NQ +T
Sbjct: 122 LNRGIIIASGNDACVAMAKYLAGSQANFINMMNQYVDQFGLKNTHFETVHGLDHENQYST 181

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           +RD A++G  + ++ P+ Y  ++ ++F + N    N N LL  K   +DG+KTG+T  +G
Sbjct: 182 SRDMALIGARIIRDLPEEYHIYAEKEFTFNNIKQPNRNGLLWDKNLTVDGLKTGHTDEAG 241

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +N+V S    +  +++VVMG+ + + R+ ++ +L+    
Sbjct: 242 YNLVASAVNNNMRLISVVMGVNSFKGREIESKKLLQWGF 280


>gi|188584526|ref|YP_001927971.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi
           BJ001]
 gi|179348024|gb|ACB83436.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi
           BJ001]
          Length = 494

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 117/284 (41%), Positives = 176/284 (61%), Gaps = 14/284 (4%)

Query: 29  QLMGKILFLSIIMISMASELHAK-------------PKYSSIVIDVNKNQMTGF-KQDEP 74
           + +  +L  +  ++++A    AK             P Y+++V+DV   +      +D  
Sbjct: 13  RAVAVLLLATSFLVAVADPAEAKRRGHARKAVSGYNPPYAAMVVDVKSGRTLHAVNEDAL 72

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           R+PAS+TK+MTLY++FE L+  +  L++ + +S  AA Q PSKL L+  +  T E+ I A
Sbjct: 73  RHPASITKVMTLYMLFEQLEKGRYDLDSPLSISANAAAQAPSKLGLRPGSTVTVEEAIKA 132

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           L+T+SANDV+ A GE I+GSE +FA +M+ KAK +GM  T Y NASGL D +QITTA D 
Sbjct: 133 LVTKSANDVACAIGENIAGSEPRFAEMMTRKAKALGMSRTHYANASGLPDPDQITTAHDL 192

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
            IL   ++  FP+YY+YF  R F +R R I NHN+LL  +  +DGIKTGYTR+SGFN++T
Sbjct: 193 TILARAIQDRFPRYYRYFQTRSFAFRGRTIGNHNRLLGNVEGVDGIKTGYTRDSGFNLMT 252

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
           + +  D  IVA+V+G  +   RD+   +L+ + L +     +QT
Sbjct: 253 AAKLGDRQIVAIVLGGKSGASRDRIMADLVRANLPRAYAGARQT 296


>gi|170691583|ref|ZP_02882748.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia graminis
           C4D1M]
 gi|170143788|gb|EDT11951.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia graminis
           C4D1M]
          Length = 409

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 82/320 (25%), Positives = 155/320 (48%), Gaps = 23/320 (7%)

Query: 31  MGKILFLSIIMISMASELHAKP--KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLY 87
           +G +L  +++  +  +++        S +++D   NQ+      DE   PASLTK+MT Y
Sbjct: 28  LGVVLPATLVASTAFAQVPPPAVNARSWVLVDATSNQVLASGNPDERVEPASLTKLMTAY 87

Query: 88  IIFEYLQSKKLHLNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           ++FE LQ+KK+ ++  +   +       + S+++++     T    +  +I +S ND + 
Sbjct: 88  LVFEALQTKKITMDQTVTPGEAVRRVRTDESRMFIEANKPVTVHDLVYGMIVQSGNDAAI 147

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E + GSE +F  +M+ +A+++GM++T + + +G+ D    TTA D A+L   L ++F
Sbjct: 148 ALAELVGGSESQFVNMMNTEAQRLGMKHTHFADVNGMPDPQHYTTAGDLAVLSARLIRDF 207

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK------ 259
           P YY  FS++ F Y      N N+LL     +DG+KTG+T+ +G+ ++ S +        
Sbjct: 208 PDYYNIFSVKDFTYNKIKQPNRNRLLWIDPTVDGLKTGHTQAAGYCLIASAKRSLPGTPD 267

Query: 260 -DDPIVAVVMGMPTSQERDQKALELITSFL----EKKTLKHQQTHRKD-------NLSST 307
               +V+V+MG     +R Q +L+++          +  K  Q            +    
Sbjct: 268 ASRRLVSVMMGETKEHDRVQDSLKMLNYGYSAYDTARLYKANQVVGTPRVYKGAQDTVQI 327

Query: 308 SLKKSLMIKKLKRTYSQFKK 327
            +K    I   K    + K 
Sbjct: 328 GVKSDQYITVPKGMADKVKP 347


>gi|148975180|ref|ZP_01812104.1| D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium SWAT-3]
 gi|145965104|gb|EDK30354.1| D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium SWAT-3]
          Length = 417

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 83/289 (28%), Positives = 147/289 (50%), Gaps = 10/289 (3%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEP-RYPASLT 81
           R  + +  +LF  + + S A      P+ ++   +++D     +   +       PASLT
Sbjct: 24  RWARALACLLFAGMSVSSFAVVTPNPPELAAKGYVLMDFQSGSIIAEQNSRAILAPASLT 83

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT---QNPSKLYLKEKTYFTTEQGILALITR 138
           K+MT Y++ + +++ +L    ++ VS+ A +      SK++++     +    +  +I +
Sbjct: 84  KLMTAYVVGQEIKAGRLTWQDKVSVSENAWSAKFSESSKMFIQPGDEISVSNLMKGVIVQ 143

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND S A  E I+GSE+ F  LM+  AK +G+Q+T + NA GL  +   T+  D AIL 
Sbjct: 144 SGNDASVALAEHIAGSEQAFVSLMNGWAKSLGLQDTNFVNAHGLDGEGIQTSPLDMAILM 203

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLR 257
             + ++ P  Y  +  R+F +      N NKLL  K  N+DG KTGYT N+G+++V+S  
Sbjct: 204 KSIIRDVPDVYALYQERRFTWNKITQYNRNKLLWDKSINVDGGKTGYTENAGYSLVSSAT 263

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSS 306
                +++VVMG  + Q R   +  L++        K  Q  ++D + S
Sbjct: 264 EGKMRLISVVMGTTSPQARTSASKNLLSYGFRFYDTK--QVMQEDRIES 310


>gi|91781628|ref|YP_556834.1| penicillin-binding protein 6 [Burkholderia xenovorans LB400]
 gi|91685582|gb|ABE28782.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Burkholderia xenovorans LB400]
          Length = 418

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 84/310 (27%), Positives = 164/310 (52%), Gaps = 15/310 (4%)

Query: 5   KIQSSAKKTFLTY-PYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP--KYSSIVIDV 61
           +   S + +F +   + S  + R + L G +L  ++   +  +++        S +++D 
Sbjct: 11  RFSISGRTSFPSVASFVSPTLARAVTL-GVVLPATLAASTAFAQVPPPAVNARSWVLVDA 69

Query: 62  NKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPSKL 118
             NQ+      DE   PASLTK+MT Y++FE LQ+KK++++  +  S+       + S++
Sbjct: 70  TSNQVLASGNADERVEPASLTKLMTAYLVFEALQTKKINMDQTVMPSEAVRRVRTDESRM 129

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
           +++     T    +  +I +S ND + A  E + GSE +F  +M+ +A+++GM++T + +
Sbjct: 130 FIEANKPVTVHDLVYGMIVQSGNDAAIALAELVGGSESQFVNMMNTEAQRLGMKHTHFAD 189

Query: 179 ASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNID 238
            +G+ D    TTA D AIL   L ++FP YY  FS+++F Y      N N+LL     +D
Sbjct: 190 VNGMPDPQHYTTAGDLAILSARLIRDFPDYYNIFSVKEFTYNKIKQPNRNRLLWIDPTVD 249

Query: 239 GIKTGYTRNSGFNIVTSLRYK-------DDPIVAVVMGMPTSQERDQKALELITSFLE-K 290
           G+KTG+T+ +G+ ++ S +            +V+V+MG     +R Q +L+++       
Sbjct: 250 GLKTGHTQAAGYCLIASAKRSLPGTTDASRRLVSVMMGETKEHDRVQDSLKMLNYGYSAY 309

Query: 291 KTLKHQQTHR 300
            T++  + ++
Sbjct: 310 DTVRLYKANQ 319


>gi|254564164|ref|YP_003071259.1| D-alanyl-D-alanine carboxypeptidase [Methylobacterium extorquens
           DM4]
 gi|254271442|emb|CAX27457.1| putative D-alanyl-D-alanine carboxypeptidase [Methylobacterium
           extorquens DM4]
          Length = 494

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 116/284 (40%), Positives = 176/284 (61%), Gaps = 14/284 (4%)

Query: 29  QLMGKILFLSIIMISMASELHAK-------------PKYSSIVIDVNKNQMTGF-KQDEP 74
           + +  +L  +  ++++A    AK             P Y+++V+DV   +      +D  
Sbjct: 13  RAVAVLLLATSFLVAVADPAEAKRRGHARKAVSGYNPPYAAMVVDVKSGRTLHAVNEDAL 72

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           R+PAS+TK+MTLY++FE L+  +  L++ + +S  AA Q PSKL L+  +  T E+ I A
Sbjct: 73  RHPASITKVMTLYMLFEQLEKGRYDLDSPLSISANAAAQAPSKLGLRPGSTVTVEEAIKA 132

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           L+T+SANDV+ A GE I+GSE +FA +M+ KAK +GM  T Y NASGL D +QITTA D 
Sbjct: 133 LVTKSANDVACAIGENIAGSEPRFAEMMTRKAKALGMSRTHYANASGLPDPDQITTAYDL 192

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
            +L   ++  FP+YY+YF  R F +R R I NHN+LL  +  +DGIKTGYTR+SGFN++T
Sbjct: 193 TLLARAIQDRFPRYYRYFQTRSFAFRGRTIGNHNRLLGNVEGVDGIKTGYTRDSGFNLMT 252

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
           + +  D  IVA+V+G  +   RD+   +L+ + L +     +QT
Sbjct: 253 AAKLGDRQIVAIVLGGKSGASRDRIMADLVRANLPRAFAGSRQT 296


>gi|262394994|ref|YP_003286848.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25]
 gi|262338588|gb|ACY52383.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25]
          Length = 392

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 83/258 (32%), Positives = 135/258 (52%), Gaps = 8/258 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
             S I++  A ++ AK     +++D +  ++   K+ +    PASLTKMMT Y+I + L 
Sbjct: 26  LASPIVVPDAPQIAAK---GYVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELA 82

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              +  +  + +SK A  +N    SK++++  T          +I +S ND   A  E I
Sbjct: 83  RGNISEDDDVTISKNAWAKNFPESSKMFIEVGTTVKVRDLNRGIIVQSGNDACVAMAEHI 142

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  F  LM+  A  +GM N+ + N  GL +    +T  D A+LG  L ++ P  Y+ 
Sbjct: 143 AGSEDAFVDLMNAWANTLGMTNSHFANVHGLDNAELYSTPYDMALLGKALIRDVPNEYRV 202

Query: 212 FSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL  K  N+DGIKTG+T N+G+++V+S       +VAVVMG 
Sbjct: 203 YSEKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGQMRLVAVVMGT 262

Query: 271 PTSQERDQKALELITSFL 288
             +  R  ++ +L++   
Sbjct: 263 KDANARKSESKKLLSYGF 280


>gi|218533141|ref|YP_002423957.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           chloromethanicum CM4]
 gi|218525444|gb|ACK86029.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           chloromethanicum CM4]
          Length = 494

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 116/284 (40%), Positives = 176/284 (61%), Gaps = 14/284 (4%)

Query: 29  QLMGKILFLSIIMISMASELHAK-------------PKYSSIVIDVNKNQMTGF-KQDEP 74
           + +  +L  +  ++++A    AK             P Y+++V+DV   +      +D  
Sbjct: 13  RAVAVLLLATSFLVAVADPAEAKRRGHARKAVSGYNPPYAAMVVDVKSGRTLHAVNEDAL 72

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           R+PAS+TK+MTLY++FE L+  +  L++ + +S  AA Q PSKL L+  +  T E+ I A
Sbjct: 73  RHPASITKVMTLYMLFEQLEKGRYDLDSPLSISANAAAQAPSKLGLRPGSTVTVEEAIKA 132

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           L+T+SANDV+ A GE I+GSE +FA +M+ KAK +GM  T Y NASGL D +QITTA D 
Sbjct: 133 LVTKSANDVACAIGENIAGSEPRFAEMMTRKAKALGMSRTHYANASGLPDPDQITTAHDL 192

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
            +L   ++  FP+YY+YF  R F +R R I NHN+LL  +  +DGIKTGYTR+SGFN++T
Sbjct: 193 TLLARAIQDRFPRYYRYFQTRSFAFRGRTIGNHNRLLGNVEGVDGIKTGYTRDSGFNLMT 252

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
           + +  D  IVA+V+G  +   RD+   +L+ + L +     +QT
Sbjct: 253 AAKLGDRQIVAIVLGGKSGASRDRIMADLVRANLPRAFAGSRQT 296


>gi|167835257|ref|ZP_02462140.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis MSMB43]
          Length = 374

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 85/310 (27%), Positives = 152/310 (49%), Gaps = 21/310 (6%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  A         S +++D + NQ+      DE   PASLTK+MT Y++FE L +KK+ +
Sbjct: 6   VPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 65

Query: 101 NTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
              +   +      ++ S+++++     +    +  +I +S ND + A  E + GSE +F
Sbjct: 66  EQIVTPGEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQF 125

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+ +A+++GM NT + + +G+ D N  TTA D A L   L +++P YY  FS+++F 
Sbjct: 126 VNMMNAQAQRLGMTNTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFA 185

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK-------DDPIVAVVMGMP 271
           Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +            +V V+MG  
Sbjct: 186 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRSLPGAADATRRLVTVMMGET 245

Query: 272 TSQERDQKALELI----TSFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKKLKR 320
              +R Q +++++    T+F   +  K  Q          K N     +KK   I   + 
Sbjct: 246 KESDRVQDSMKMLSYGYTAFDSVRLYKAGQPIDTPRVYKGKSNNVQVGVKKDQFITVPRG 305

Query: 321 TYSQFKKIDA 330
              + K   A
Sbjct: 306 LADKVKPEVA 315


>gi|221211096|ref|ZP_03584075.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans CGD1]
 gi|221168457|gb|EEE00925.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans CGD1]
          Length = 438

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 78/258 (30%), Positives = 139/258 (53%), Gaps = 10/258 (3%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
            +  A         S +++D   N +      DE   PASLTK+MT Y++FE L  KK+ 
Sbjct: 69  FMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKIS 128

Query: 100 LNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           +   +  S+      ++ S+++++     +    +  +I +S ND + A  E + GSE +
Sbjct: 129 MEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQ 188

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F  +M+++A+++GM+ T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F
Sbjct: 189 FVTMMNDEAQRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEF 248

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGM 270
           +Y N    N N+LL     +DG+KTG+T+ +GF +++S +            +VAV+MG 
Sbjct: 249 KYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGFCLISSAKRPIPGASDAQRRLVAVMMGE 308

Query: 271 PTSQERDQKALELITSFL 288
           P   +R Q +++++    
Sbjct: 309 PKESDRTQDSMKMLNYGY 326


>gi|253688070|ref|YP_003017260.1| Beta-lactamase [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251754648|gb|ACT12724.1| Beta-lactamase [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 401

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 75/258 (29%), Positives = 134/258 (51%), Gaps = 11/258 (4%)

Query: 42  ISMASELHAKPKYSS---IVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKK 97
            + A ++ A P+  +   I++D +  ++      DE   PASLTK+M  Y+I + ++S K
Sbjct: 26  FTYAEQMPAVPQIDAKAFILMDYHSGKVLAESNADERLDPASLTKIMASYVIGQAIKSGK 85

Query: 98  LHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
           +    ++ V K A        +  S ++LK        +    ++ +S ND S A  +++
Sbjct: 86  ISPTDEVTVGKDAWATGNPALRGSSLMFLKPGDRIPVSELNKGIVIQSGNDASIALADYV 145

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GS+  F  LM+N  K + + NT +    GL    Q +TARD A+LG  L ++ P+ Y  
Sbjct: 146 AGSQDAFVSLMNNYVKALNLTNTHFLTVHGLDATGQYSTARDMALLGQALIRDVPEEYAL 205

Query: 212 FSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
              ++F + N    N N+LL   + N+DG+KTG+T  +G N+V S    +  +++VV+G 
Sbjct: 206 HKEKEFTFNNIRQPNRNRLLWSTNLNVDGVKTGHTNGAGHNLVASATEGNMRLISVVLGA 265

Query: 271 PTSQERDQKALELITSFL 288
            T   R +++ +L+T   
Sbjct: 266 QTDAIRFRESEKLLTWGF 283


>gi|291616674|ref|YP_003519416.1| DacA [Pantoea ananatis LMG 20103]
 gi|291151704|gb|ADD76288.1| DacA [Pantoea ananatis LMG 20103]
          Length = 418

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 79/275 (28%), Positives = 145/275 (52%), Gaps = 17/275 (6%)

Query: 31  MGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQ-DEPRYPASL 80
           +G ++  S+   ++A +++ K            + ++ID N  ++   K  D  R PASL
Sbjct: 30  VGSLIAFSLSHAAIADDVNLKTMIPGVPDIDAEAYVLIDYNSGKVLAEKNADARRDPASL 89

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILA 134
           TKMMT Y+I + +++ K+H +  + V + A        +  S ++LK        Q    
Sbjct: 90  TKMMTSYVIGQAVKAGKIHQDDIVTVGQDAWATGNPVFKGSSLMFLKPGDRVPVSQLTRG 149

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           ++ +S ND   A  ++++GS+  F  LM+N  K +G+QNT ++   GL  + Q ++ARD 
Sbjct: 150 IVLQSGNDACVAMADYVAGSQDAFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYSSARDM 209

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIV 253
           A++G  L ++ P+ Y  +  ++F + N    N N LL      +DGIKTG+T ++G+N+V
Sbjct: 210 ALIGQALIRDVPEEYAVYKEKEFTFNNIRQMNRNGLLWDTSLTVDGIKTGHTASAGYNLV 269

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            S       +++ VMG  T + R+ ++ +L+T   
Sbjct: 270 ASATEGQMRLISAVMGGHTFKGRETESKKLLTWGF 304


>gi|240141656|ref|YP_002966136.1| putative D-alanyl-D-alanine carboxypeptidase [Methylobacterium
           extorquens AM1]
 gi|240011633|gb|ACS42859.1| putative D-alanyl-D-alanine carboxypeptidase [Methylobacterium
           extorquens AM1]
          Length = 494

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 116/284 (40%), Positives = 176/284 (61%), Gaps = 14/284 (4%)

Query: 29  QLMGKILFLSIIMISMASELHAK-------------PKYSSIVIDVNKNQMTGF-KQDEP 74
           + +  +L  +  ++++A    AK             P Y+++V+DV   +      +D  
Sbjct: 13  RAVAVLLLATSFLVAVADPAEAKRRGHARKAVSGYNPPYAAMVVDVKSGRTLHAVNEDAL 72

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           R+PAS+TK+MTLY++FE L+  +  L++ + +S  AA Q PSKL L+  +  T E+ I A
Sbjct: 73  RHPASITKVMTLYMLFEQLEKGRYDLDSPLSISANAAAQAPSKLGLRPGSTVTVEEAIKA 132

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           L+T+SANDV+ A GE I+GSE +FA +M+ KAK +GM  T Y NASGL D +QITTA D 
Sbjct: 133 LVTKSANDVACAIGENIAGSEPRFAEMMTRKAKALGMSRTHYANASGLPDPDQITTAHDL 192

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
            +L   ++  FP+YY+YF  R F +R R I NHN+LL  +  +DGIKTGYTR+SGFN++T
Sbjct: 193 TLLARAIQDRFPRYYRYFQTRSFAFRGRTIGNHNRLLGNVEGVDGIKTGYTRDSGFNLMT 252

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
           + +  D  IVA+V+G  +   RD+   +L+ + L +     +QT
Sbjct: 253 AAKLGDRQIVAIVLGGKSGASRDRIMADLVRANLPRAFAGSRQT 296


>gi|325929151|ref|ZP_08190294.1| penicillin-binding protein 6 [Xanthomonas perforans 91-118]
 gi|325540470|gb|EGD12069.1| penicillin-binding protein 6 [Xanthomonas perforans 91-118]
          Length = 401

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 75/250 (30%), Positives = 135/250 (54%), Gaps = 9/250 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S I++D    Q+   +   +   PAS+TK+MT Y++   +++ K+  + Q+ +S+ A  +
Sbjct: 51  SWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWRE 110

Query: 114 N-----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                  S            E     +  +S ND + A  E ++GSE+ FA LM++ A K
Sbjct: 111 GGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAK 170

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           IGM+++ + NA GL  +   +TA D A+LG  + +++P+ Y Y  I++F+      +N N
Sbjct: 171 IGMKDSYFVNAHGLSAEGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGTIKQSNRN 230

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS-- 286
           +LL +   +DGIKTG+T  +G+ +++S +  D  ++AVVMG  + ++R   +L L+    
Sbjct: 231 RLLWRDSAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNWGF 290

Query: 287 -FLEKKTLKH 295
            F E  +L  
Sbjct: 291 RFFETHSLYA 300


>gi|269965477|ref|ZP_06179596.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B]
 gi|269829956|gb|EEZ84186.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B]
          Length = 392

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 83/258 (32%), Positives = 135/258 (52%), Gaps = 8/258 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
             S I++  A ++ AK     +++D +  ++   K+ +    PASLTKMMT Y+I + L 
Sbjct: 26  LASPIVVPDAPQIAAK---GYVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELA 82

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              +  +  + +SK A  +N    SK++++  T          +I +S ND   A  E I
Sbjct: 83  RGNISEDDDVTISKNAWAKNFPDSSKMFIEVGTTVKVRDLNRGIIVQSGNDACVAMAEHI 142

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  F  LM+  A  +GM N+ + N  GL +    +T  D A+LG  L ++ P  Y+ 
Sbjct: 143 AGSEDAFVDLMNAWANTLGMTNSHFANVHGLDNAELYSTPYDMALLGKALIRDVPNEYRV 202

Query: 212 FSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL  K  N+DGIKTG+T N+G+++V+S       +VAVVMG 
Sbjct: 203 YSEKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGQMRLVAVVMGT 262

Query: 271 PTSQERDQKALELITSFL 288
             +  R  ++ +L++   
Sbjct: 263 KDANARKSESKKLLSYGF 280


>gi|146312224|ref|YP_001177298.1| D-alanyl-D-alanine carboxypeptidase [Enterobacter sp. 638]
 gi|145319100|gb|ABP61247.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Enterobacter sp. 638]
          Length = 394

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 69/284 (24%), Positives = 134/284 (47%), Gaps = 14/284 (4%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMA------SELHAKPKYSSIVIDVNKNQMT-GFKQDE 73
            I ++R + +   +L  S+     A       +  A    S +++D    Q+     + +
Sbjct: 4   DISLKRRLFIALSLLASSVTPALAADPLDFSPQPPAIQAGSWVLMDYTTGQILTAGNEHQ 63

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN------PSKLYLKEKTYFT 127
            R PASLTK+MT Y++   + S ++  +  + V + A  +        S ++LK     +
Sbjct: 64  QRNPASLTKLMTGYVVDRAIDSHRITPDDMVTVGRDAWAKGNPVFDGSSLMFLKAGERVS 123

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
                  LI  S ND   A  ++++G + +F  +M+   +K+G+++T ++   GL    Q
Sbjct: 124 VRDLSRGLIVDSGNDACVALADYVAGGQPQFVNMMNEYVQKLGLRDTHFETVHGLDAPGQ 183

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTR 246
            ++A D A+L   +    P +Y  +S +   +      N N LL  K   +DG+KTG+T 
Sbjct: 184 HSSAYDLAVLSRAIIHGEPDFYHMYSEKSLTWNGVTQQNRNGLLWDKNLKVDGLKTGHTS 243

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            +GFN++ S       ++AV+MG  + + R+ +A +L+    + 
Sbjct: 244 GAGFNLIASAVDGQRRLIAVIMGGESPKGREDQARKLLHWGQQN 287


>gi|300716035|ref|YP_003740838.1| D-alanyl-D-alanine carboxypeptidase [Erwinia billingiae Eb661]
 gi|299061871|emb|CAX58987.1| D-alanyl-D-alanine carboxypeptidase [Erwinia billingiae Eb661]
          Length = 400

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 79/255 (30%), Positives = 133/255 (52%), Gaps = 11/255 (4%)

Query: 45  ASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           A E  A P     + I++D N  ++      D+   PASLTKMM  Y++ + +++ K+  
Sbjct: 28  AEEAPAAPQIDAKAWILMDYNSGKVLAESHADDRLDPASLTKMMASYVVGQAIKAGKITN 87

Query: 101 NTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
           +  + V K A        Q  S ++LK        +    +I +S ND S A  ++++GS
Sbjct: 88  DDMVTVGKDAWATGNPILQGSSLMFLKPGDRIPVSELNKGIIIQSGNDASIALADYVAGS 147

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           +  F  LM+N  + +G++NT +K   GL    Q +TARD A++G  L ++ PQ Y     
Sbjct: 148 QDSFVSLMNNYVQALGLKNTHFKTVHGLDSDGQYSTARDMALIGQALIRDVPQEYALHKE 207

Query: 215 RKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           ++F +      N N+LL   +  +DGIKTG+T  +G N+V S    D  +++VV+G PT 
Sbjct: 208 KEFTFNRIHQQNRNRLLWSSNLQVDGIKTGHTAGAGNNLVASAVSGDQRLISVVLGSPTD 267

Query: 274 QERDQKALELITSFL 288
             R +++ +L+T   
Sbjct: 268 ATRFRESEKLLTWGF 282


>gi|218289604|ref|ZP_03493824.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240254|gb|EED07437.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 414

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 75/253 (29%), Positives = 128/253 (50%), Gaps = 8/253 (3%)

Query: 43  SMASELH-AKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHL 100
           + AS +  AK   S++++D    ++   K    R P AS+TK+MTL +IFE + S KL  
Sbjct: 50  APASSVDLAKQARSAVLMDFATGKVLYAKNAHERLPMASITKIMTLLLIFEAIDSGKLKW 109

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
             ++  S+ AA+   S+++L+     T    +  +   SAND   A  E + GSE+ F  
Sbjct: 110 TDRVQASERAASMGGSQIFLEPGETMTVRDLVKGIAIASANDACVAMAEHLDGSEEAFVA 169

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI-----R 215
            M+ +AK++GM +T + N +GL   N  ++A D AI+   L    P+   + S+     R
Sbjct: 170 RMNQRAKELGMTDTHFANCNGLPAPNHYSSAHDIAIMSRALL-MHPEVTAFTSVYSDYLR 228

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           K       + N NKL+     +DG+KTGYT+ + + +  + +     ++AVVMG P    
Sbjct: 229 KDTDHPLWLVNTNKLVRFYDGVDGLKTGYTQEAKYCLSATAKRDGFRVIAVVMGEPKPTV 288

Query: 276 RDQKALELITSFL 288
           R+ +   ++    
Sbjct: 289 RNAEIAGMLNYAF 301


>gi|157370876|ref|YP_001478865.1| D-alanyl-D-alanine carboxypeptidase [Serratia proteamaculans 568]
 gi|157322640|gb|ABV41737.1| Serine-type D-Ala-D-Ala carboxypeptidase [Serratia proteamaculans
           568]
          Length = 389

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 82/280 (29%), Positives = 139/280 (49%), Gaps = 15/280 (5%)

Query: 24  IQRNIQLMGKILFLSIIMISMASEL-------HAKPKYSSIVIDVNKNQMTG-FKQDEPR 75
           ++R++  +   + L + + +  + L        A    S +++D    Q+      D+ R
Sbjct: 1   MKRSVLAVITGILLPLAVQAADAPLNFPLNTPPAIDAASYVLMDYTTGQVLAQENADQRR 60

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN------PSKLYLKEKTYFTTE 129
            PASLTK+MT  +I   L   K+ L+  + V K A  Q        S ++LK     T  
Sbjct: 61  NPASLTKLMTGLVIDHALDQHKIGLDDVVTVGKDAWAQGNPVFKGSSLMFLKPGDRVTVR 120

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
                +I  S ND   A  ++++GS+  F  LM+ K+ ++G+QNT ++   GL    Q T
Sbjct: 121 DLSRGIIIDSGNDACVAMADYVAGSQAAFVKLMNEKSAQLGLQNTHFETVHGLDAPGQFT 180

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNS 248
           TA D A++   +  + P  Y  +S +   +      N N LL  K   +DG+KTG+T ++
Sbjct: 181 TAGDLAVISRAIIMSEPAEYHMYSEKSLTWNGITQQNRNGLLWDKNLRVDGLKTGHTESA 240

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           GFNI+ S    D  ++AVVMG  + + R+++A +L+T  L
Sbjct: 241 GFNIIASATEGDRRLIAVVMGGKSPKGREEQARKLLTWGL 280


>gi|76808683|ref|YP_332034.1| penicillin-binding protein 6 [Burkholderia pseudomallei 1710b]
 gi|134279982|ref|ZP_01766694.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei 305]
 gi|167822505|ref|ZP_02453976.1| penicillin-binding protein 6 [Burkholderia pseudomallei 9]
 gi|217420171|ref|ZP_03451677.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           576]
 gi|226193704|ref|ZP_03789307.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           Pakistan 9]
 gi|254258059|ref|ZP_04949113.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           1710a]
 gi|76578136|gb|ABA47611.1| penicillin-binding protein 6 [Burkholderia pseudomallei 1710b]
 gi|134249182|gb|EBA49264.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei 305]
 gi|217397475|gb|EEC37491.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           576]
 gi|225934282|gb|EEH30266.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           Pakistan 9]
 gi|254216748|gb|EET06132.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           1710a]
          Length = 437

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 154/310 (49%), Gaps = 21/310 (6%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  A         S +++D + NQ+      DE   PASLTK+MT Y++FE L +KK+ +
Sbjct: 69  VPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 128

Query: 101 NTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
              +  S+      ++ S+++++     +    +  +I +S ND + A  E + GSE +F
Sbjct: 129 EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 188

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+ +A+++GM+NT + + +G+ D N  TTA D A L   L +++P YY  FS+++F 
Sbjct: 189 VNMMNAEAQRLGMKNTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFT 248

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMP 271
           Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +            +V V+MG  
Sbjct: 249 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGET 308

Query: 272 TSQERDQKALELI----TSFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKKLKR 320
              +R Q +++++    T+F   +  K  Q          K N     +KK   I   + 
Sbjct: 309 KESDRVQDSMKMLNYGYTAFDSVRLYKASQPIDTPRVYKGKSNNVQVGVKKDQFITVPRG 368

Query: 321 TYSQFKKIDA 330
              + K   A
Sbjct: 369 LADKVKPEVA 378


>gi|91792211|ref|YP_561862.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella denitrificans
           OS217]
 gi|91714213|gb|ABE54139.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Shewanella denitrificans OS217]
          Length = 428

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 78/256 (30%), Positives = 138/256 (53%), Gaps = 8/256 (3%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSK 96
           + ++I  A  + AK   + +++D +  Q+       E   PASLTKMMT Y+I   L+  
Sbjct: 63  APMVIPDAPSVAAK---AYVLMDYHSGQVIAEGNSYESLNPASLTKMMTSYVIGHELKVG 119

Query: 97  KLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            + L  ++ ++K A ++N    SK++++       +     +I +S ND   A  E I+G
Sbjct: 120 NISLEDEVTITKNAWSKNFPDSSKMFIEVGKTVKVDDLNRGIIIQSGNDACVAMAEHIAG 179

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           +E  F  LM++ +K++GM ++ ++N+ GL  +N  TTA D A+LG  L ++ PQ Y+ ++
Sbjct: 180 TEGAFVDLMNSWSKQLGMNDSYFENSHGLDSENHKTTAYDMALLGAALIRDVPQEYRVYA 239

Query: 214 IRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            + F Y      N N LL     N+DGIKTG+T  +G+N+V S       +++VV+G  +
Sbjct: 240 EKSFTYNGIKQYNRNGLLWDNSLNVDGIKTGHTSGAGYNLVASATSDGMRLISVVLGTSS 299

Query: 273 SQERDQKALELITSFL 288
              R  ++ +L+    
Sbjct: 300 ESARKAESKKLLNYGF 315


>gi|67642413|ref|ZP_00441170.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei GB8 horse 4]
 gi|121598771|ref|YP_991575.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei SAVP1]
 gi|124385285|ref|YP_001027352.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei NCTC 10229]
 gi|126449591|ref|YP_001082709.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei NCTC 10247]
 gi|126454122|ref|YP_001064741.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei
           1106a]
 gi|167003222|ref|ZP_02269012.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei PRL-20]
 gi|242314349|ref|ZP_04813365.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           1106b]
 gi|254176979|ref|ZP_04883636.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei ATCC 10399]
 gi|254202020|ref|ZP_04908384.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei FMH]
 gi|254207352|ref|ZP_04913703.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei JHU]
 gi|254357610|ref|ZP_04973884.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei 2002721280]
 gi|121227581|gb|ABM50099.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei SAVP1]
 gi|124293305|gb|ABN02574.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia mallei NCTC
           10229]
 gi|126227764|gb|ABN91304.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei
           1106a]
 gi|126242461|gb|ABO05554.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia mallei NCTC
           10247]
 gi|147747914|gb|EDK54990.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei FMH]
 gi|147752894|gb|EDK59960.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei JHU]
 gi|148026674|gb|EDK84759.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei 2002721280]
 gi|160698020|gb|EDP87990.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei ATCC 10399]
 gi|238523562|gb|EEP87000.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei GB8 horse 4]
 gi|242137588|gb|EES23990.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           1106b]
 gi|243061219|gb|EES43405.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei PRL-20]
          Length = 437

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 85/310 (27%), Positives = 154/310 (49%), Gaps = 21/310 (6%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  A         S +++D + NQ+      DE   PASLTK+MT Y++FE L +KK+ +
Sbjct: 69  VPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 128

Query: 101 NTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
              +  S+      ++ S+++++     +    +  +I +S ND + A  E + GSE +F
Sbjct: 129 EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 188

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+ +A+++GM++T + + +G+ D N  TTA D A L   L +++P YY  FS+++F 
Sbjct: 189 VNMMNAEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFT 248

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMP 271
           Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +            +V V+MG  
Sbjct: 249 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGET 308

Query: 272 TSQERDQKALELI----TSFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKKLKR 320
              +R Q +++++    T+F   +  K  Q          K N     +KK   I   + 
Sbjct: 309 KESDRVQDSMKMLNYGYTAFDSVRLYKAGQPIGTPRVYKGKSNNVQVGVKKDQFITVPRG 368

Query: 321 TYSQFKKIDA 330
              + K   A
Sbjct: 369 LADKVKPEVA 378


>gi|238795791|ref|ZP_04639304.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia mollaretii ATCC
           43969]
 gi|238720254|gb|EEQ12057.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia mollaretii ATCC
           43969]
          Length = 424

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 130/242 (53%), Gaps = 8/242 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           + +++D N  ++      D+   PASLTK+M+ Y+I + +++ K+H +  + V K A   
Sbjct: 65  AYVLMDFNSGKVLVEGNSDQRLDPASLTKIMSSYVIGQAIKAGKVHPDDLVTVGKDAWAT 124

Query: 113 -----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                +  S ++LK             ++ +S ND S A  ++++GS+  F  LM+N AK
Sbjct: 125 GNPALRGSSLMFLKPGDQVKLSDLNKGIVIQSGNDASIALADYVAGSQDSFVGLMNNYAK 184

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
            +G+ NT +    GL    Q +TARD A+LG  L ++ P+ Y     ++F + N    N 
Sbjct: 185 ALGLTNTHFMTVHGLDAPGQYSTARDMAVLGQALIRDVPEEYALHKEKEFTFNNIRQINR 244

Query: 228 NKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           N+LL   + N+DG+KTG+T  +G N+V S       +++VV+G P+ + R  ++ +L+T 
Sbjct: 245 NRLLWSTNLNVDGMKTGFTTGAGHNLVASATDGPMRLISVVLGAPSDRVRFSESEKLLTW 304

Query: 287 FL 288
             
Sbjct: 305 GF 306


>gi|114799142|ref|YP_759747.1| putative D-alanyl-D-alanine carboxypeptidase [Hyphomonas neptunium
           ATCC 15444]
 gi|114739316|gb|ABI77441.1| putative D-alanyl-D-alanine carboxypeptidase [Hyphomonas neptunium
           ATCC 15444]
          Length = 442

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 111/253 (43%), Positives = 161/253 (63%), Gaps = 2/253 (0%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQS 95
           +SI    MA   HA+ KY++IV+D +  ++     QD+PRYPASLTK+MTLY++F+ + +
Sbjct: 19  VSITAAVMAPSAHAE-KYAAIVVDADSGEVLHARNQDDPRYPASLTKVMTLYLLFDAIDA 77

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
             + L  +I VS+ AA Q PS L L+     T E  I AL T+SANDV+ A  EF+ GSE
Sbjct: 78  GDVSLKDKIKVSRNAAAQPPSNLRLRAGDTITVEDAIYALTTKSANDVAAAVAEFLGGSE 137

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           +KFA +M++KA+ +G+ NT ++NASGL D  Q++TARD AIL   L  N   YY YF  +
Sbjct: 138 RKFAAMMTDKARDLGLSNTTFRNASGLPDTAQLSTARDLAILADALLDNHEPYYHYFQNQ 197

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           +F +      +HN L+  +  +DGIKTGYTR SGFN++TS       ++A+V+G  +++ 
Sbjct: 198 RFSWGGMTYKSHNNLIGSVDGVDGIKTGYTRASGFNLMTSAERDGRRVIAIVLGGASAKS 257

Query: 276 RDQKALELITSFL 288
           RD    EL+ S  
Sbjct: 258 RDAHVTELVESAF 270


>gi|271499698|ref|YP_003332723.1| beta-lactamase [Dickeya dadantii Ech586]
 gi|270343253|gb|ACZ76018.1| Beta-lactamase [Dickeya dadantii Ech586]
          Length = 403

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 87/299 (29%), Positives = 151/299 (50%), Gaps = 20/299 (6%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASEL------HAKP---KYSSIVIDVNKNQMTGFKQ 71
           S + +R    +G +L +S    + A ++       A P     + I+ID N  ++   K 
Sbjct: 7   SCFTKRI--ALGTLLAISASTFAYADDINLKTMIPAVPDIDAEAYILIDYNSGKVLAEKN 64

Query: 72  -DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKT 124
            D  R PASLTKMMT Y+I + +++ K+  N  + + K A        Q  S ++LK   
Sbjct: 65  ADARRNPASLTKMMTSYVIGQAIKAGKITPNDVVTIGKDAWATGNPDFQGSSLMFLKPGD 124

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
                     +I +S ND   A  ++++GS+  F  LM+   K +G+QNT +K   GL  
Sbjct: 125 RVPVYLLNKGIILQSGNDACVAMADYVAGSQDAFVNLMNGYVKALGLQNTNFKTVHGLDA 184

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTG 243
           + Q ++ARD A++G  L ++ P  Y  +  ++F + N    N N LL      +DGIKTG
Sbjct: 185 EGQYSSARDMALIGQALIRDVPDEYATYKEKEFTFNNIRQLNRNGLLWDSSLAVDGIKTG 244

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE-KKTLKHQQTHRK 301
           +T ++G+N+V S       +++ VMG  T + R+ ++ +L+T      +T+   +T ++
Sbjct: 245 HTASAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLTWGFRFFETVAPLKTGKE 303


>gi|296160368|ref|ZP_06843185.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. Ch1-1]
 gi|295889349|gb|EFG69150.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. Ch1-1]
          Length = 410

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 84/311 (27%), Positives = 164/311 (52%), Gaps = 16/311 (5%)

Query: 5   KIQSSAKKTF--LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP--KYSSIVID 60
           +  +S + +F      + S  + R + L G +L  ++   +  +++        S +++D
Sbjct: 2   RFSTSGRTSFPSSVASFVSPTLARAVTL-GIVLPATLAASTAFAQVPPPAVNARSWVLVD 60

Query: 61  VNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPSK 117
              NQ+      DE   PASLTK+MT Y++FE LQ+KK++++  +  S+       + S+
Sbjct: 61  ATSNQVLASGNADERVEPASLTKLMTAYLVFEALQTKKINMDQTVMPSEAVRRVRTDESR 120

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           ++++     T    +  +I +S ND + A  E + GSE +F  +M+ +A+++GM++T + 
Sbjct: 121 MFIEANKPVTVHDLVYGMIVQSGNDAAIALAELVGGSESQFVNMMNTEAQRLGMKHTHFA 180

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNI 237
           + +G+ D    TTA D AIL   L ++FP YY  FS+++F Y      N N+LL     +
Sbjct: 181 DVNGMPDPQHYTTAGDLAILSARLIRDFPDYYNIFSVKEFTYNKIKQPNRNRLLWIDPTV 240

Query: 238 DGIKTGYTRNSGFNIVTSLRYK-------DDPIVAVVMGMPTSQERDQKALELITSFLE- 289
           DG+KTG+T+ +G+ ++ S +            +V+V+MG     +R Q +L+++      
Sbjct: 241 DGLKTGHTQAAGYCLIASAKRSLPGTTDASRRLVSVMMGETKEHDRVQDSLKMLNYGYSA 300

Query: 290 KKTLKHQQTHR 300
             T++  + ++
Sbjct: 301 YDTVRLYKANQ 311


>gi|300715824|ref|YP_003740627.1| penicillin-binding protein 5 [Erwinia billingiae Eb661]
 gi|299061660|emb|CAX58776.1| Penicillin-binding protein 5 [Erwinia billingiae Eb661]
          Length = 403

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 79/275 (28%), Positives = 140/275 (50%), Gaps = 17/275 (6%)

Query: 31  MGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQ-DEPRYPASL 80
            G ++ LS+   + A +++ K            + ++ID N  ++   K  D  R PASL
Sbjct: 15  AGSLIALSLTSFAHADDVNIKTMIPGVPDIDAEAYVLIDYNSGKVLAEKNADARRDPASL 74

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILA 134
           TKMMT Y+I + +++ K+  +  + V K A        +  S ++LK        +    
Sbjct: 75  TKMMTSYVIGQAVKAGKIKQDDMVTVGKDAWATGNPVFKGSSLMFLKPGDRVAVSELTRG 134

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           ++ +S ND   A  ++++GS+  F  LM+N  K +G+QNT ++   GL    Q ++ARD 
Sbjct: 135 IVLQSGNDACVAMADYVAGSQDTFVGLMNNYVKALGLQNTHFQTVHGLDADGQYSSARDM 194

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIV 253
           A++G  L ++ P  Y  +  ++F + N    N N LL      +DGIKTG+T  +G+N+V
Sbjct: 195 ALIGRALIRDVPDEYAVYKEKEFTFNNIRQMNRNGLLWDTSLQVDGIKTGHTEAAGYNLV 254

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            S       +++ VMG  T + R+ ++ +L+T   
Sbjct: 255 ASATEGQMRLISAVMGGHTYKGRETESKKLLTWGF 289


>gi|229140812|ref|ZP_04269357.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus BDRD-ST26]
 gi|228642602|gb|EEK98888.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus BDRD-ST26]
          Length = 385

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 88/298 (29%), Positives = 153/298 (51%), Gaps = 21/298 (7%)

Query: 34  ILFLSIIMISMA-------------SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           +L LS   +S A             +   A+   S+IVI+ +  ++   K  +E   PAS
Sbjct: 1   MLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFDKNPNEKLPPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MT+ +I E ++  KL L  ++  S+ AA+   S+++L+     T  + +  +   S
Sbjct: 61  MTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTVNEMLKGIAIAS 120

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND S A  E I+GSE+ F  +M+ KAK +G++NT ++N +GL  K+  +TA D AI+  
Sbjct: 121 GNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMAK 180

Query: 200 LLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
            L K +P   KY       +R+   +   + N NKL+     +DG+KTG+T  + + +  
Sbjct: 181 ELMK-YPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTA 239

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           S       +++VVMG PTS+ER+ +  +L+     +   K   T R + + +  + K 
Sbjct: 240 SAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYT-RGEKIKTVQVGKG 296


>gi|254181990|ref|ZP_04888587.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei
           1655]
 gi|184212528|gb|EDU09571.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei
           1655]
          Length = 437

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 85/310 (27%), Positives = 154/310 (49%), Gaps = 21/310 (6%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  A         S +++D + NQ+      DE   PASLTK+MT Y++FE L +KK+ +
Sbjct: 69  VPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 128

Query: 101 NTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
              +  S+      ++ S+++++     +    +  +I +S ND + A  E + GSE +F
Sbjct: 129 EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 188

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+ +A+++GM++T + + +G+ D N  TTA D A L   L +++P YY  FS+++F 
Sbjct: 189 VNMMNAEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFT 248

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMP 271
           Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +            +V V+MG  
Sbjct: 249 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGET 308

Query: 272 TSQERDQKALELI----TSFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKKLKR 320
              +R Q +++++    T+F   +  K  Q          K N     +KK   I   + 
Sbjct: 309 KESDRVQDSMKMLNYGYTAFDSVRLYKAGQPIDTPRVYKGKSNNVQVGVKKDQFITVPRG 368

Query: 321 TYSQFKKIDA 330
              + K   A
Sbjct: 369 LADKVKPEVA 378


>gi|167856207|ref|ZP_02478943.1| D-alanyl-D-alanine carboxypeptidase fraction A [Haemophilus
           parasuis 29755]
 gi|167852662|gb|EDS23940.1| D-alanyl-D-alanine carboxypeptidase fraction A [Haemophilus
           parasuis 29755]
          Length = 393

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 84/257 (32%), Positives = 142/257 (55%), Gaps = 9/257 (3%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
            A +L+A+   + I++D N   +      D+ + PASLTKMMT Y++ E L++ K+  + 
Sbjct: 33  AAPQLNAQ---TYILMDYNSGAVLASLNPDQHQAPASLTKMMTSYVVGEALKTGKIKNSD 89

Query: 103 QIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            + V++ +  Q     SK++L      + E     +I  S ND   A  E ISGSE+ F 
Sbjct: 90  LVTVTENSWGQKFPGSSKMFLNVNQQVSVEDLNKGIIVVSGNDACVAIAEHISGSEQTFI 149

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             M+   +K G++NT +    GL    Q ++ARD AI+G  + ++ P+ YK +S ++F Y
Sbjct: 150 DSMNKFVQKFGLKNTHFATVHGLDHPEQYSSARDMAIIGAHIIRDLPEEYKIYSEKEFTY 209

Query: 220 RNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N LL  K  N+DG+KTG+T  +G+N+V S    +  +++VVMG+PT + R+ 
Sbjct: 210 NKITQPNRNGLLWDKSINVDGMKTGHTDQAGYNLVASAYNSNTRLISVVMGVPTYKGREV 269

Query: 279 KALELITSFL-EKKTLK 294
           ++ +L+       +T+K
Sbjct: 270 ESKKLLQWGFANFETVK 286


>gi|161523591|ref|YP_001578603.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia multivorans
           ATCC 17616]
 gi|221199887|ref|ZP_03572930.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans
           CGD2M]
 gi|221207444|ref|ZP_03580453.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans CGD2]
 gi|160341020|gb|ABX14106.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia multivorans
           ATCC 17616]
 gi|221172647|gb|EEE05085.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans CGD2]
 gi|221180126|gb|EEE12530.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans
           CGD2M]
          Length = 438

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 78/258 (30%), Positives = 139/258 (53%), Gaps = 10/258 (3%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
            +  A         S +++D   N +      DE   PASLTK+MT Y++FE L  KK+ 
Sbjct: 69  FMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKIS 128

Query: 100 LNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           +   +  S+      ++ S+++++     +    +  +I +S ND + A  E + GSE +
Sbjct: 129 MEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQ 188

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F  +M+++A+++GM+ T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F
Sbjct: 189 FVTMMNDEAQRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEF 248

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGM 270
           +Y N    N N+LL     +DG+KTG+T+ +GF +++S +            +VAV+MG 
Sbjct: 249 KYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGFCLISSAKRPIPGASDAQRRLVAVMMGE 308

Query: 271 PTSQERDQKALELITSFL 288
           P   +R Q +++++    
Sbjct: 309 PKESDRTQDSMKMLNYGY 326


>gi|166710542|ref|ZP_02241749.1| D-alanyl-D-alanine carboxypeptidase precursor [Xanthomonas oryzae
           pv. oryzicola BLS256]
          Length = 401

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 75/250 (30%), Positives = 135/250 (54%), Gaps = 9/250 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S I++D    Q+   +   +   PAS+TK+MT Y++   +++ K+  + Q+ +S+ A  +
Sbjct: 51  SWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWRE 110

Query: 114 N-----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                  S            E     +  +S ND + A  E ++GSE+ FA LM++ A K
Sbjct: 111 GGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAK 170

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           IGM+++ + NA GL  +   +TA D A+LG  + +++P  Y Y  I++F+  +   +N N
Sbjct: 171 IGMKDSYFVNAHGLTAEGHHSTAYDLAMLGRAMVRDYPDTYAYNKIKEFQVGSIKQSNRN 230

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS-- 286
           +LL +   +DGIKTG+T  +G+ +++S +  D  ++AVVMG  + ++R   +L L+    
Sbjct: 231 RLLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNWGF 290

Query: 287 -FLEKKTLKH 295
            F E  +L  
Sbjct: 291 RFFETHSLYA 300


>gi|163752391|ref|ZP_02159585.1| D-alanyl-D-alanine carboxypeptidase [Shewanella benthica KT99]
 gi|161327728|gb|EDP98916.1| D-alanyl-D-alanine carboxypeptidase [Shewanella benthica KT99]
          Length = 348

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 77/235 (32%), Positives = 127/235 (54%), Gaps = 5/235 (2%)

Query: 59  IDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN--- 114
           +D N  Q+   +   E   PASLTKMMT Y+I   ++   +    ++ +SK A ++N   
Sbjct: 1   MDYNTGQIIAEENAYESLNPASLTKMMTSYVIGHEIKVGNISPEDEVTISKKAWSKNFPD 60

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            SK++++     T +     +I +S ND   A  E I+G+E  F  LM++ A ++GM+++
Sbjct: 61  SSKMFIEVGKQVTVDDLNHGIIIQSGNDACVAMAEHIAGTEDGFVDLMNSWAIQLGMKDS 120

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-K 233
            ++N+ GL  KN  +TA D A+LG  L ++ P  Y  +  + F Y      N N LL  K
Sbjct: 121 FFENSHGLDAKNHKSTAYDMALLGAALIRDVPDEYAVYKQKSFTYNGIKQYNRNGLLWDK 180

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
             N+DGIKTG+T  +G+N+VTS       +++VVMG  +   R  ++ +L+    
Sbjct: 181 SMNVDGIKTGHTSGAGYNLVTSATKDGMRLISVVMGTKSENARKAESKKLLNYGF 235


>gi|327189245|gb|EGE56423.1| putative serine-type D-Ala-D-Ala carboxypeptidase protein
           [Rhizobium etli CNPAF512]
          Length = 493

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 117/277 (42%), Positives = 173/277 (62%), Gaps = 3/277 (1%)

Query: 35  LFLSIIMISM--ASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFE 91
           + ++++++    A    A PKY+ IV+D     +   +  +   YPASLTKMMTLY+ FE
Sbjct: 1   MAVTVVLVDSVNAEAEAANPKYAGIVVDAKTGNVLYSENADRLQYPASLTKMMTLYMTFE 60

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            L+  ++ L+T +P S  AA Q P+KL ++     T EQGIL L+T SAND +TA GE +
Sbjct: 61  ALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDAATALGEML 120

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            GSE +F  +M+ KA  +GM  T Y+NA+GL +  Q+TTARDQA LGI LR++FPQYY Y
Sbjct: 121 GGSEDRFGQMMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQHFPQYYGY 180

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           FS R F++  R I +HN+L+  +  +DGIKTGYTR +GFN+V+S++     IV+VV+G  
Sbjct: 181 FSTRAFKFGTRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSIVSVVLGGT 240

Query: 272 TSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
           +   RD +   LI ++L K + +   +      +   
Sbjct: 241 SGPARDAQMRNLIATYLPKASSRGGSSQLIAQAAPAP 277


>gi|229198199|ref|ZP_04324908.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus m1293]
 gi|228585359|gb|EEK43468.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus m1293]
          Length = 385

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 83/269 (30%), Positives = 145/269 (53%), Gaps = 8/269 (2%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 30  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 90  HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRI 223
           +G++NT ++N +GL  K+  +TA D AI+   L K +P   KY       +R+   +   
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMK-YPLIRKYTGKYEDYLREDTDKKFW 208

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +L
Sbjct: 209 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKL 268

Query: 284 ITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           +     +   K   T R + + +  + K 
Sbjct: 269 LDYAFGQYMTKKLYT-RGEKIKTVQVGKG 296


>gi|163801380|ref|ZP_02195279.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. AND4]
 gi|159174869|gb|EDP59669.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. AND4]
          Length = 388

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 143/293 (48%), Gaps = 12/293 (4%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTL 86
           + L    L    ++     +L AK     +++D     +   +       PASLTK+MT 
Sbjct: 13  LLLASSCLPALAVVTPNPPQLQAK---GYVLMDFQSGAIIAEQNARAGLAPASLTKLMTA 69

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSANDV 143
           Y++ + ++S +L  + ++ VS+ A +    + SK++++     T    +  +I +S ND 
Sbjct: 70  YVVGQEIKSGRLQWDDKVTVSENAWSAKFPDSSKMFIQPNDEITIANLMRGVIIQSGNDA 129

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
             A  E ++GSE  F  LM+  A K+ + +T + N+ GL  +   T+  D A L   +  
Sbjct: 130 CVALAEHVAGSEGAFVSLMNGWADKLSLNDTYFVNSHGLDSEGIQTSPNDMATLMQAIIN 189

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           + P+ Y  +S + F++      N NKLL  K  ++DG KTGYT N+G+++V+S +     
Sbjct: 190 DVPEVYALYSEKVFKWNKITQYNRNKLLWDKSMDVDGGKTGYTSNAGYSLVSSAKQGKMR 249

Query: 263 IVAVVMGMPTSQERDQKALELITSFL----EKKTLKHQQTHRKDNLSSTSLKK 311
           +++VVMG P+ Q R  ++  L++        K+  K  +      +    + K
Sbjct: 250 LISVVMGTPSKQSRITQSKNLLSYGFRFYGTKQVAKQGEVQASAKVWKGDVSK 302


>gi|307130041|ref|YP_003882057.1| D-alanyl-D-alanine carboxypeptidase [Dickeya dadantii 3937]
 gi|306527570|gb|ADM97500.1| D-alanyl-D-alanine carboxypeptidase [Dickeya dadantii 3937]
          Length = 403

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 92/335 (27%), Positives = 159/335 (47%), Gaps = 30/335 (8%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASEL------HAKP---KYSSIVIDVNKNQMTGFKQ 71
           S + +R    +G +L +S    + A ++       A P     + I+ID N  ++   K 
Sbjct: 7   SCFTKRI--ALGTLLAISASTFAYADDINLKTMIPAVPDIDAEAYILIDYNSGKVLAEKN 64

Query: 72  -DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKT 124
            D  R PASLTKMMT Y+I + ++S K+  N  + + K A        Q  S ++LK   
Sbjct: 65  ADARRNPASLTKMMTSYVIGQAIKSGKISPNDVVTIGKDAWATGNPDFQGSSLMFLKPGD 124

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
                     +I +S ND   A  ++++GS+  F  LM+   K +G+QNT +K   GL  
Sbjct: 125 RVPVYLLNKGIILQSGNDACVAMADYVAGSQDSFVNLMNGYVKALGLQNTNFKTVHGLDA 184

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTG 243
             Q ++ARD A++G  L ++ P  Y  +  ++F + N    N N LL      +DGIKTG
Sbjct: 185 DGQYSSARDMALIGQALIRDVPDEYATYKEKEFTFNNIRQMNRNGLLWDSSLAVDGIKTG 244

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE-KKTLKHQQTHRK- 301
           +T ++G+N+V S       +++ VMG  T + R+ ++ +L+T      +T+   +T ++ 
Sbjct: 245 HTASAGYNLVASATEGQMRLISAVMGGRTFKGRETESKKLLTWGFRFFETVAPLKTGKEF 304

Query: 302 ---------DNLSSTSLKKSLMIKKLKRTYSQFKK 327
                    ++  S  + K + I   +      K 
Sbjct: 305 ASEPVWFGDNDRVSLGVDKDVYITIPRGRMKDLKA 339


>gi|114771313|ref|ZP_01448733.1| D-alanyl-D-alanine carboxypeptidase family protein [alpha
           proteobacterium HTCC2255]
 gi|114548238|gb|EAU51125.1| D-alanyl-D-alanine carboxypeptidase family protein [alpha
           proteobacterium HTCC2255]
          Length = 481

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 102/258 (39%), Positives = 151/258 (58%), Gaps = 3/258 (1%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
            FL +++I      +A P Y+++V+D    ++   +  D   +PASLTKMMTLY+ F+ +
Sbjct: 9   FFLVVVLIFTGVSAYAAP-YAALVMDARTGEVLHSRNADTRLHPASLTKMMTLYLAFKAV 67

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           +S  L L+ ++ VS+ AA++ PSKL L+          I A   +SAND +TA GE I+G
Sbjct: 68  ESGHLSLDEKVKVSRNAASEPPSKLGLRTGMRVKVRHLIRAAAVKSANDAATALGEAIAG 127

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           SE KF  LM+ +AK +GM+ T +KNA GL  +  ++TARD +ILG  L  +FP YY  FS
Sbjct: 128 SEAKFTALMTAQAKALGMKRTTFKNAHGLTARGHLSTARDMSILGRHLMYDFPDYYNLFS 187

Query: 214 IRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            R      R + N N +LL      DGIKTGYT  +GFN+V+S +  +  I+A V G  T
Sbjct: 188 RRNTDAGLRTVPNTNRRLLANYKGADGIKTGYTNAAGFNLVSSAQRGNKRIIATVFGGRT 247

Query: 273 SQERDQKALELITSFLEK 290
            + R+ +  EL+     +
Sbjct: 248 WRSRNARVAELLDMGFNR 265


>gi|304559487|gb|ADM42151.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda FL6-60]
          Length = 399

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 72/276 (26%), Positives = 137/276 (49%), Gaps = 9/276 (3%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPAS 79
           +++I+R + L   +  +++ +++           + I++D +  ++      DE   PAS
Sbjct: 7   TVFIRR-LTLGASLSLVALPLLAADPAPPQINAKAYILLDYDSGRVLTEGNADERLDPAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGIL 133
           LTK+M  Y+I + L+S K+     + V K A        +  S ++LK        +   
Sbjct: 66  LTKIMASYVIGQALKSGKIAPGDMVVVGKDAWATGNPLLRGSSLMFLKPGDRVPVAELNR 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            ++ +S ND S A  + ++GS+  F  LM+      G++NT ++   GL  + Q ++ARD
Sbjct: 126 GVVIQSGNDASIALADHVAGSQDAFVNLMNQYVGAWGLKNTHFRTVHGLDSEGQYSSARD 185

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNI 252
            A++   L  + P  Y+    ++F +      N N+LL     N+DG+KTG+T  +G N+
Sbjct: 186 MALISQRLIADVPDEYQLNKEKEFTFNKIRQINRNRLLWDSSLNVDGVKTGFTGGAGHNL 245

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           V S       +++VV+G PT + R  ++ +L+T   
Sbjct: 246 VASATDGPMRLISVVLGAPTDRIRFDESKKLLTWGF 281


>gi|83593039|ref|YP_426791.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodospirillum rubrum
           ATCC 11170]
 gi|83575953|gb|ABC22504.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodospirillum rubrum
           ATCC 11170]
          Length = 388

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 145/295 (49%), Gaps = 7/295 (2%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLY 87
           + +   +  + ++ +M ++        ++VID++ + +   K  D P  P+S++K+MT Y
Sbjct: 6   RHLTPFVLAAGLLTAMPAQAFETKARHALVIDLDTDTVLLDKDADVPMPPSSMSKLMTAY 65

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAA-----TQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           ++FE L+S  L L+    VS+ A          S ++L           +  +I +S ND
Sbjct: 66  MLFERLKSGSLSLDDTFSVSENAWRKGGAASGGSTMFLNPGAQVKVHDLMRGIIIQSGND 125

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
                 E ++G E  FA  M+ +AK++G+ N+ + NA+GL D     TA D  +L   + 
Sbjct: 126 ACVVVAENLAGDEATFAAAMNRRAKELGLTNSHFVNATGLPDPEHYMTAHDLVLLAEHII 185

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           ++FP++Y+ +   KF Y   +  N N LL      DG+KTG+T  +GF +  S       
Sbjct: 186 RDFPEFYEIYGETKFTYNGIVQHNRNPLLYMNMGADGLKTGHTNIAGFGLTASAVQDGRR 245

Query: 263 IVAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHRKDNLSSTSLKKSLMIK 316
           ++ V+ G+ +++ER ++A  L++      +T+   +  +  + +   + +   + 
Sbjct: 246 LLMVINGLQSNKERSEEAERLMSWGFRNFETVTLLKAGQPISDADVWMGEEETVP 300


>gi|225872450|ref|YP_002753905.1| D-alanyl-D-alanine carboxypeptidase family protein [Acidobacterium
           capsulatum ATCC 51196]
 gi|225792978|gb|ACO33068.1| D-alanyl-D-alanine carboxypeptidase family protein [Acidobacterium
           capsulatum ATCC 51196]
          Length = 414

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 99/277 (35%), Positives = 159/277 (57%), Gaps = 2/277 (0%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLT 81
           Y  +   L    L +++  ++MA    A   ++S+++D    ++   +  DE  +PASLT
Sbjct: 14  YFAKQSLLSAGCLLMALTALAMARPAQAV-VHASLLMDARSGKVLYAYHADERTHPASLT 72

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MTLY+ F+ LQ  ++ L+ ++ +S  AA Q PSK++L      +    IL +I+ SAN
Sbjct: 73  KLMTLYLTFQRLQDGRMRLDERLHISAHAAGQQPSKMWLHAGGTVSVRSCILGIISHSAN 132

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D +    E ++G+E +F  LM+ +A+++GM +TI+ NASGL D  Q TTA D A L   L
Sbjct: 133 DAAVTLAEGMAGTEWRFTRLMNEQARRLGMTHTIFYNASGLPDGRQWTTAYDMAKLARAL 192

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
              FPQYY +FS+  FRY+ R++ + ++L  +   +DG+KTGY  +SGFNIVTS      
Sbjct: 193 IYTFPQYYHFFSVHAFRYQGRMLYSFDRLPQEYTGVDGMKTGYINSSGFNIVTSAVRNHH 252

Query: 262 PIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
            ++ VV+G  T+  RD + + L+        L    T
Sbjct: 253 RVIGVVLGGATAHSRDLQMIALLNRGFRSPLLTAHIT 289


>gi|209886488|ref|YP_002290345.1| serine-type D-Ala-D-Ala carboxypeptidase [Oligotropha
           carboxidovorans OM5]
 gi|209874684|gb|ACI94480.1| serine-type D-Ala-D-Ala carboxypeptidase [Oligotropha
           carboxidovorans OM5]
          Length = 492

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 90/307 (29%), Positives = 157/307 (51%), Gaps = 10/307 (3%)

Query: 35  LFLSIIMISMASELHAKPKYS--SIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFE 91
           ++L  I  +++  L A+P  +   ++ID +  ++       +P YPASLTK+MT Y+   
Sbjct: 14  IWLIAIAAALSLSLWARPAQAEAYLLIDASSGKVLQATNATQPWYPASLTKIMTAYVTLS 73

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            ++  +++L+T + VS  A +Q PSK+     T  T +  +  ++ +SAND++    E +
Sbjct: 74  AVKQGRINLDTLLTVSPNALSQAPSKMGFPAGTQVTVDNALKMMMVKSANDMAVVLAEGV 133

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            GS   F+ LM+  A+++GM  T Y N +GL D  QI++ARD  IL     ++ P+Y  Y
Sbjct: 134 GGSVDGFSALMNETARQLGMTQTHYVNPNGLPDDRQISSARDLGILSRAFYRDLPEYQYY 193

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
             +   ++  RI  N NKL+ +    DG+KTG+   SGFN+V S    D  ++AVV+G  
Sbjct: 194 AHLPGIKFGRRITHNFNKLIGRYPGADGLKTGFICASGFNLVASATRNDRHLIAVVLGAS 253

Query: 272 TSQERDQKALELITSFLEKKTLKHQQTHRK-------DNLSSTSLKKSLMIKKLKRTYSQ 324
           +S +R  KA +L+        L   +            +    +L+  +     KR  ++
Sbjct: 254 SSAQRTVKAAQLLEKGFNGSKLAWLKPSLGTVEQLPPVDALPPNLRDQVCGPHRKRPAAE 313

Query: 325 FKKIDAK 331
            +  D +
Sbjct: 314 DEDDDIE 320


>gi|293397311|ref|ZP_06641583.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM
           4582]
 gi|291420229|gb|EFE93486.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM
           4582]
          Length = 431

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 80/284 (28%), Positives = 141/284 (49%), Gaps = 22/284 (7%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKP--------------KYSSIVIDVNKNQMTGF-KQ 71
           + +++  +   ++I +S A+  HA                  S I+ID N  ++      
Sbjct: 34  SFRIIKSLALGTVIAMSAANSAHADDVNIKTMIPGVPQIDAESYILIDYNSGKVLAESNA 93

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTY 125
           D  R PASLTKMMT Y+I + L+S K+     + V + A        +  S ++LK    
Sbjct: 94  DARRDPASLTKMMTSYVIGQALKSGKIGQEDLVTVGQDAWATGNPVFKGSSLMFLKPGDR 153

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
               +    +  +S ND   A  ++++GS+  F  LM+   K++G+QNT ++   GL  +
Sbjct: 154 VPVSKLTRGINLQSGNDACVAMADYVAGSQDAFVNLMNTYVKQLGLQNTHFQTVHGLDAQ 213

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGY 244
            Q ++ARD A++G  L ++ P  Y  +  ++F + N    N N LL     N+DGIKTG+
Sbjct: 214 GQFSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQVNRNGLLWDTSLNVDGIKTGH 273

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           T  +G+N+V S       +++ V+G  T + R+ ++ +L+T   
Sbjct: 274 TSAAGYNLVASATEGQMRLISAVLGGRTYKGRETESKKLLTWGF 317


>gi|239996931|ref|ZP_04717455.1| D-alanyl-D-alanine carboxypeptidase [Alteromonas macleodii ATCC
           27126]
          Length = 394

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 78/264 (29%), Positives = 135/264 (51%), Gaps = 5/264 (1%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           L+   L  +     +     +      ++ D     +   K  D    PASLTK+MT+Y+
Sbjct: 18  LVIGTLLHTANAAVVTPPAPSVAAEGFLLTDFETGHVIASKNADMQLAPASLTKIMTIYV 77

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           I + LQ+  + L+ ++ +S+ A  +   + SK++++  T  +    +  ++ +S ND   
Sbjct: 78  IGKELQAGNISLDDEVTISENAWAKKFPDSSKMFIEVGTQVSVRDLLRGIVVQSGNDACV 137

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E ++GSE  FA +M+     +GM  + + NA GLHD +  TT RD AIL   L    
Sbjct: 138 AMAEHVAGSESAFASMMNAHTASLGMSGSHWVNAHGLHDPDHYTTPRDMAILSRALIAET 197

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           P+ YK +S ++F Y      N N LL  K  N+DGIKTG+T ++G++++TS       ++
Sbjct: 198 PEMYKIYSEKEFTYNGIKQYNRNSLLWDKSLNVDGIKTGHTSDAGYSLITSAEQGGMRLI 257

Query: 265 AVVMGMPTSQERDQKALELITSFL 288
           +VVMG  + + R  +  +L+    
Sbjct: 258 SVVMGTDSERARKVENKKLLKYGF 281


>gi|229192288|ref|ZP_04319253.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus ATCC 10876]
 gi|228591238|gb|EEK49092.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus ATCC 10876]
          Length = 385

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 83/266 (31%), Positives = 143/266 (53%), Gaps = 8/266 (3%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+ AA
Sbjct: 33  ASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAA 92

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK +G+
Sbjct: 93  SMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGL 152

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITN 226
           +NT ++N +GL  K+  +TA D AI+   L K +P   KY       +R+   +   + N
Sbjct: 153 KNTHFQNPTGLPAKDHYSTANDMAIMARELMK-YPLIRKYTGKYEDYLREDTDKKFWLVN 211

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            NKL+     +DG+KTG+T  + + +  S       I++VVMG PTS+ER+ +  +L+  
Sbjct: 212 TNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRIISVVMGAPTSKERNNQVTKLLDY 271

Query: 287 FLEKKTLKHQQTHRKDNLSSTSLKKS 312
              +   K   T R + + +  + K 
Sbjct: 272 AFGQYMTKKLYT-RGEKIKTVQVGKG 296


>gi|229543944|ref|ZP_04433003.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus coagulans 36D1]
 gi|229325083|gb|EEN90759.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus coagulans 36D1]
          Length = 387

 Score =  288 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 75/281 (26%), Positives = 145/281 (51%), Gaps = 14/281 (4%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELH-----AKPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           +++ I L+   +  + +++  A         A    S+I+I+    ++   K   E   P
Sbjct: 1   MKKIIGLVTCFMLAAGVLVPEAFAAEKKNELAPEAKSAILIEQATGEVLYSKNSHEELPP 60

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MT+ +I E L   ++ ++ ++  S+ AA+   S+++L+     T EQ +  +  
Sbjct: 61  ASMTKIMTMLLIMEALDKGEIKMDEKVRTSEYAASMGGSQIFLEPGEEMTVEQMLKGIAI 120

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            SAND + A  E I GSE+ F   M+ +AK +G++NT ++N +GL  K   ++A D AI+
Sbjct: 121 GSANDAAVAMAERIGGSEEAFVDKMNERAKALGLKNTHFENVTGLPVKGHYSSAYDMAIM 180

Query: 198 GILLRKNF------PQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
              L K+        +Y  Y  +R+   +   + N NKL+     +DG+KTG+T  + F 
Sbjct: 181 AKQLLKHHGITHFTGKYEDY--LREGSDKKFWLVNTNKLVRHYPGVDGLKTGFTNEAKFC 238

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +  + +     ++AVV G P+++ R+ +  +++     + T
Sbjct: 239 LTATAKKNGMRVIAVVFGAPSTKVRNAQVSKMLDYAFSQYT 279


>gi|54309028|ref|YP_130048.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
           profundum SS9]
 gi|46913460|emb|CAG20246.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
           profundum SS9]
          Length = 404

 Score =  288 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 82/273 (30%), Positives = 142/273 (52%), Gaps = 10/273 (3%)

Query: 26  RNIQLMGKILFLSIIMISMA-----SELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPAS 79
           R I  +    FLS+ + ++A      +         +++D N  ++   K       PAS
Sbjct: 19  RIISAVTGTFFLSLSLPALAVPTVIPDAPVLGAKGYVLMDYNTGRVLVEKNANVKLNPAS 78

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALI 136
           LTK+MT Y+  + ++   +  +  + +S+ A  +N    SK++++  T  +       LI
Sbjct: 79  LTKLMTSYVAGQEMKRGNISQDDIVVISRNAWARNFSDSSKMFIEVGTEVSMMDLYRGLI 138

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E ++GS+  F  LM++ AK +GM N+ + NA GL + N  +T  D A+
Sbjct: 139 IQSGNDASVAIAEHVAGSQDAFVGLMNSWAKNLGMNNSQFANAHGLDNPNLYSTPYDIAL 198

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTS 255
           LG  L K+ P  Y  +S R F Y N    N N LL  K  N+DG+KTGYT  +G+++ +S
Sbjct: 199 LGQALIKDLPDLYPLYSERSFTYNNITQRNRNGLLGDKSINVDGMKTGYTSGAGYSLASS 258

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
               +  +++VVMG  +++ R+ ++ +L+    
Sbjct: 259 ATQGNMRLISVVMGSSSTKSREAESKQLLNYGF 291


>gi|58583579|ref|YP_202595.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84625391|ref|YP_452763.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188575165|ref|YP_001912094.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58428173|gb|AAW77210.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84369331|dbj|BAE70489.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188519617|gb|ACD57562.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 401

 Score =  288 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 134/250 (53%), Gaps = 9/250 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S I++D    Q+   +   +   PAS+TK+MT Y++   +++ K+  + Q+ +S+ A  +
Sbjct: 51  SWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWRE 110

Query: 114 N-----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                  S            E     +  +S ND + A  E ++GSE+ FA LM+  A K
Sbjct: 111 GGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNTYAAK 170

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           IGM+++ + NA GL  +   ++A D A+LG  + +++P  Y Y  I++F+  +   +N N
Sbjct: 171 IGMKDSYFVNAHGLSAEGHHSSAYDLAMLGRAMVRDYPDTYAYNKIKEFQVGSIKQSNRN 230

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS-- 286
           +LL +   +DGIKTG+T  +G+ +++S +  D  ++AVVMG  + ++R   +L L+    
Sbjct: 231 RLLWRDPAVDGIKTGHTSEAGYCLLSSAKRDDQRLIAVVMGDSSEEQRATDSLALLNWGF 290

Query: 287 -FLEKKTLKH 295
            F E  +L  
Sbjct: 291 RFFETHSLYA 300


>gi|163854196|ref|YP_001642239.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           extorquens PA1]
 gi|163665801|gb|ABY33168.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           extorquens PA1]
          Length = 494

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 117/284 (41%), Positives = 176/284 (61%), Gaps = 14/284 (4%)

Query: 29  QLMGKILFLSIIMISMASELHAK-------------PKYSSIVIDVNKNQMTGF-KQDEP 74
           + +  +L  +  ++++A    AK             P Y+++V+DV   +      +D  
Sbjct: 13  RAVAVLLLATSFLVAVADPAEAKRRGHARKAVSGYNPPYAAMVVDVKSGRTLHAVNEDAL 72

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           R+PAS+TK+MTLY++FE L+  +  L++ + +S  AA Q PSKL L+  +  T E+ I A
Sbjct: 73  RHPASITKVMTLYMLFEQLEKGRYDLDSPLSISANAAAQAPSKLGLRPGSTVTVEEAIKA 132

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           L+T+SANDV+ A GE I+GSE +FA +M+ KAK IGM  T Y NASGL D +QITTA D 
Sbjct: 133 LVTKSANDVACAIGENIAGSEPRFAEMMTRKAKAIGMSRTHYANASGLPDPDQITTAHDL 192

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
            +L   ++  FP+YY+YF  R F +R R I NHN+LL  +  +DGIKTGYTR+SGFN++T
Sbjct: 193 TLLARAIQDRFPRYYRYFQTRSFAFRGRTIGNHNRLLGNVEGVDGIKTGYTRDSGFNLMT 252

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
           + +  D  IVA+V+G  +   RD+   +L+ + L +     +QT
Sbjct: 253 AAKLGDRQIVAIVLGGKSGASRDRIMADLVRANLPRAFAGSRQT 296


>gi|209521266|ref|ZP_03269986.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. H160]
 gi|209498308|gb|EDZ98443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. H160]
          Length = 409

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 153/298 (51%), Gaps = 16/298 (5%)

Query: 5   KIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP----KYSSIVID 60
           +  +S + +F      S       +++   L L   +++ ++     P      S +++D
Sbjct: 2   RFSTSGRTSF--PSVASFVPASLNRVIAVSLVLPATLVASSAFAQVPPPGVNARSWVLVD 59

Query: 61  VNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPSK 117
              NQ+      DE   PASLTK+MT Y++FE L +KK+ ++  I  S+       + S+
Sbjct: 60  ATSNQVLASANADERVEPASLTKLMTAYLVFEALDTKKITMDQSIEPSEAVRRVRNDESR 119

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           ++++     T    +  +I +S ND + A  E + GSE +F  +M+ +A+++GM++T + 
Sbjct: 120 MFIEALKPVTVHDLVYGMIVQSGNDAAIALAELVGGSEAQFVDMMNKEAQRLGMKHTHFA 179

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNI 237
           + +G+ D    TTA D AIL   L +++P YY  FS+++F Y      N N+LL     +
Sbjct: 180 DVNGMPDPQHYTTAGDLAILSARLIRDYPDYYNIFSVKEFTYNKIKQPNRNRLLWIDPTV 239

Query: 238 DGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMPTSQERDQKALELITSFL 288
           DG+KTG+T+ +G+ ++ S +            +V+V+MG     +R Q +L+++    
Sbjct: 240 DGLKTGHTQAAGYCLIASAKRPMPGATDASRRLVSVMMGETKEHDRVQDSLKMLNYGY 297


>gi|229093134|ref|ZP_04224256.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock3-42]
 gi|228690283|gb|EEL44076.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus Rock3-42]
          Length = 385

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 83/269 (30%), Positives = 145/269 (53%), Gaps = 8/269 (2%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 30  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 90  HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRI 223
           +G++NT ++N +GL  K+  +TA D AI+   L K +P   KY       +R+   +   
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMK-YPLIRKYTGKYEDYLREDTDKKFW 208

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +L
Sbjct: 209 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKL 268

Query: 284 ITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           +     +   K   T R + + +  + K 
Sbjct: 269 LDYAFGQYMTKKLYT-RGEKIKTVQVGKG 296


>gi|228929125|ref|ZP_04092152.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228935397|ref|ZP_04098215.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228947796|ref|ZP_04110083.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229123599|ref|ZP_04252794.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus 95/8201]
 gi|229157660|ref|ZP_04285735.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus ATCC 4342]
 gi|228625617|gb|EEK82369.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus ATCC 4342]
 gi|228659734|gb|EEL15379.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus cereus 95/8201]
 gi|228811783|gb|EEM58117.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228824149|gb|EEM69963.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228830415|gb|EEM76025.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 385

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 83/269 (30%), Positives = 145/269 (53%), Gaps = 8/269 (2%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 30  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 90  HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRI 223
           +G++NT ++N +GL  K+  +TA D AI+   L K +P   KY       +R+   +   
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMK-YPLIRKYTGKYEDYLREDTDKKFW 208

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +L
Sbjct: 209 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKL 268

Query: 284 ITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           +     +   K   T R + + +  + K 
Sbjct: 269 LDYAFGQYMTKKLYT-RGEKIKTVQVGKG 296


>gi|228987267|ref|ZP_04147388.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228772496|gb|EEM20941.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 385

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 83/269 (30%), Positives = 145/269 (53%), Gaps = 8/269 (2%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+IVI+ +  ++   K  +E   PAS+TK+MT+ +I E ++  KL L  ++  S+
Sbjct: 30  AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T  + +  +   S ND S A  E I+GSE+ F  +M+ KAK 
Sbjct: 90  HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRI 223
           +G++NT ++N +GL  K+  +TA D AI+   L K +P   KY       +R+   +   
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMK-YPLIRKYTGKYEDYLREDTDKKFW 208

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           + N NKL+     +DG+KTG+T  + + +  S       +++VVMG PTS+ER+ +  +L
Sbjct: 209 LVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKL 268

Query: 284 ITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           +     +   K   T R + + +  + K 
Sbjct: 269 LDYAFGQYMTKKLYT-RGEKIKTVQVGKG 296


>gi|116252287|ref|YP_768125.1| penicillin-binding protein/D-alanyl-D-alanine carboxypeptidase
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256935|emb|CAK08029.1| putative penicillin-binding protein/D-alanyl-D-alanine
           carboxypeptidase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 523

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 122/288 (42%), Positives = 177/288 (61%), Gaps = 2/288 (0%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLT 81
           +  R + ++   + + ++    A    A PKY+ IV+D     +   +  +   YPASLT
Sbjct: 23  FFARLLAILSVAVTIVMVDSVNADAEAANPKYAGIVVDAKTGNVLYSENADRLQYPASLT 82

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           KMMTLY+ FE L+  ++ L+T +P S  AA Q P+KL ++     T EQGIL L+T SAN
Sbjct: 83  KMMTLYMTFEALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSAN 142

Query: 142 DVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           D +TA GE + G SE +FA LM+ KA  +GM  T Y+NA+GL +  Q+TTARDQA LGI 
Sbjct: 143 DAATALGEMLGGGSEDRFAQLMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIA 202

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           LR++FPQYY YFS R F++ +R I +HN+L+  +  +DGIKTGYTR +GFN+V+S++   
Sbjct: 203 LRQHFPQYYGYFSTRAFKFGSRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDG 262

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
             IV VVMG  ++  RD +   LI S+L K + +   +      +   
Sbjct: 263 KSIVGVVMGGASTPARDAQMRNLIASYLPKASSRGGSSALIAQAAPAP 310


>gi|21232885|ref|NP_638802.1| penicillin-binding protein 6 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767044|ref|YP_241806.1| penicillin-binding protein 6 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188990136|ref|YP_001902146.1| exported serine-type D-Ala-D-Ala carboxypeptidase [Xanthomonas
           campestris pv. campestris str. B100]
 gi|21114716|gb|AAM42726.1| penicillin-binding protein 6 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572376|gb|AAY47786.1| penicillin-binding protein 6 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167731896|emb|CAP50080.1| exported serine-type D-Ala-D-Ala carboxypeptidase [Xanthomonas
           campestris pv. campestris]
          Length = 403

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 80/290 (27%), Positives = 145/290 (50%), Gaps = 17/290 (5%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S I++D    Q+   +   +   PAS+TK+MT Y++   +++ K+  + Q+ +S+ A  +
Sbjct: 53  SWILMDYATGQVLAGENIHQELAPASITKVMTSYVVAAEIKNGKISRDDQVMMSERAWRE 112

Query: 114 NP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                  S            E     +  +S ND + A  E ++GSE+ FA LM++ A K
Sbjct: 113 GGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAK 172

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           IGM+N+ + NA GL  +   ++A D A+LG  + +++P+ Y Y  I++F+       N N
Sbjct: 173 IGMKNSYFVNAHGLSAEGHHSSAYDLAMLGRAMVRDYPETYAYNKIKEFQVGTIKQNNRN 232

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS-- 286
            LL +   +DGIKTG+T  +G+ +++S +  D  +VAVVMG  + ++R   +L L+    
Sbjct: 233 LLLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLVAVVMGDTSERQRADDSLALLNWGF 292

Query: 287 -FLEKKTL--------KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
            F E  +L        K +    + +     + + L++   +  Y   K 
Sbjct: 293 RFFETHSLYAPGKVVTKQKVWKGEQDEVQLGVAQPLLVSLQRGRYKDLKP 342


>gi|269139610|ref|YP_003296311.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda EIB202]
 gi|267985272|gb|ACY85101.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda EIB202]
          Length = 411

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 72/276 (26%), Positives = 137/276 (49%), Gaps = 9/276 (3%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPAS 79
           +++I+R + L   +  +++ +++           + I++D +  ++      DE   PAS
Sbjct: 19  TVFIRR-LTLGASLSLVALPLLAADPAPPQINAKAYILLDYDSGRVLTEGNADERLDPAS 77

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGIL 133
           LTK+M  Y+I + L+S K+     + V K A        +  S ++LK        +   
Sbjct: 78  LTKIMASYVIGQALKSGKIAPGDMVVVGKDAWATGNPLLRGSSLMFLKPGDRVPVAELNR 137

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            ++ +S ND S A  + ++GS+  F  LM+      G++NT ++   GL  + Q ++ARD
Sbjct: 138 GVVIQSGNDASIALADHVAGSQDAFVNLMNQYVGAWGLKNTHFRTVHGLDSEGQYSSARD 197

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNI 252
            A++   L  + P  Y+    ++F +      N N+LL     N+DG+KTG+T  +G N+
Sbjct: 198 MALISQRLIADVPDEYQLNKEKEFTFNKIRQINRNRLLWDSSLNVDGVKTGFTGGAGHNL 257

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           V S       +++VV+G PT + R  ++ +L+T   
Sbjct: 258 VASATDGPMRLISVVLGAPTDRIRFDESKKLLTWGF 293


>gi|332532441|ref|ZP_08408319.1| D-alanyl-D-alanine carboxypeptidase [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038084|gb|EGI74531.1| D-alanyl-D-alanine carboxypeptidase [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 387

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 79/271 (29%), Positives = 139/271 (51%), Gaps = 8/271 (2%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGF-KQDEPRYPASLT 81
           + ++ +  ++  + +  + A  + A P+ ++    ++D    ++    + D    PASLT
Sbjct: 7   KILKGVCGLVCTAAVFSASAQIIPAPPQVNAKGYFLVDFTTGKVIAEGEADTQLAPASLT 66

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITR 138
           KMMT Y+I   +++  +     + VS+ A  +N    SK++++     + ++    +I +
Sbjct: 67  KMMTSYVIGTEIKAGNIATTDMVTVSEKAWAKNFPESSKMFIEVGKQISVDELNHGIIIQ 126

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND   A  E I+GSE  FA LM+  A K+GM N+ + N+ GL      TT RD A LG
Sbjct: 127 SGNDACVAMAEHIAGSESAFADLMNAHAAKLGMSNSHFINSHGLDTDEHFTTPRDMATLG 186

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLR 257
             L ++ P  Y  +  + F Y      N N LL     ++DGIKTG+T  +G+++VTS  
Sbjct: 187 AALIRDVPDEYALYKQKSFTYNGIKQYNRNSLLWDESLDVDGIKTGHTSEAGYSLVTSAT 246

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFL 288
             D  ++AVVMG  + + R  ++ +L+    
Sbjct: 247 KNDMRLIAVVMGTSSERARKVESKKLLNYGF 277


>gi|116690911|ref|YP_836534.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia
           HI2424]
 gi|170734237|ref|YP_001766184.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia
           MC0-3]
 gi|116649000|gb|ABK09641.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Burkholderia cenocepacia HI2424]
 gi|169817479|gb|ACA92062.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia
           MC0-3]
          Length = 436

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 86/312 (27%), Positives = 152/312 (48%), Gaps = 21/312 (6%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  A         S +++D   N +      DE   PASLTK+MT Y++FE L  KK+ +
Sbjct: 69  MPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISM 128

Query: 101 NTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
              +  S       ++ S+++++     +    +  +I +S ND + A  E + GSE +F
Sbjct: 129 EQIVTPSDAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQF 188

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+++A ++GM+ T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F+
Sbjct: 189 VTMMNDEAGRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYSIFSEKEFK 248

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY------KDDPIVAVVMGMPT 272
           Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +           +V+V+MG   
Sbjct: 249 YNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEQK 308

Query: 273 SQERDQKALELIT----SFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKKLKRT 321
             ER Q +++++     +F   +  K  Q          KDN     +K        +  
Sbjct: 309 ESERTQDSMKMLNYGYSAFDSVRLFKGGQAISTPRIYKGKDNTVQVGVKGDQWATVPRGL 368

Query: 322 YSQFK-KIDAKA 332
             + K ++D  A
Sbjct: 369 GDKVKTEVDVNA 380


>gi|254247085|ref|ZP_04940406.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia
           PC184]
 gi|124871861|gb|EAY63577.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia
           PC184]
          Length = 436

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 86/312 (27%), Positives = 152/312 (48%), Gaps = 21/312 (6%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  A         S +++D   N +      DE   PASLTK+MT Y++FE L  KK+ +
Sbjct: 69  MPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISM 128

Query: 101 NTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
              +  S       ++ S+++++     +    +  +I +S ND + A  E + GSE +F
Sbjct: 129 EQIVTPSDAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQF 188

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+++A ++GM+ T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F+
Sbjct: 189 VTMMNDEAGRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYSIFSEKEFK 248

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY------KDDPIVAVVMGMPT 272
           Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +           +V+V+MG   
Sbjct: 249 YNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEQK 308

Query: 273 SQERDQKALELIT----SFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKKLKRT 321
             ER Q +++++     +F   +  K  Q          KDN     +K        +  
Sbjct: 309 ESERTQDSMKMLNYGYSAFDSVRLFKGGQAISTPRIYKGKDNTVQVGVKGDQWATVPRGL 368

Query: 322 YSQFK-KIDAKA 332
             + K ++D  A
Sbjct: 369 GDKVKTEVDVNA 380


>gi|325915034|ref|ZP_08177363.1| penicillin-binding protein 6 [Xanthomonas vesicatoria ATCC 35937]
 gi|325538732|gb|EGD10399.1| penicillin-binding protein 6 [Xanthomonas vesicatoria ATCC 35937]
          Length = 401

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 132/240 (55%), Gaps = 6/240 (2%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S I++D    Q+   +   +   PAS+TK+MT Y++   +++ K+  + Q+ +S+ A  +
Sbjct: 51  SWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWRE 110

Query: 114 N-----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                  S            E     +  +S ND + A  E ++GSE+ FA LM++ A K
Sbjct: 111 GGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAK 170

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           IGM+N+ + NA GL  +   +TA D A+LG  + +++P+ Y Y  I++F+  +   +N N
Sbjct: 171 IGMKNSYFVNAHGLSAEGHHSTAYDLAMLGRAMVRDYPETYAYNKIKEFQVGSIKQSNRN 230

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +LL +   +DGIKTG+T  +G+ +++S +  D  ++AVVMG  + ++R   +L L+    
Sbjct: 231 RLLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDTSEEQRATDSLALLNWGF 290


>gi|325519264|gb|EGC98711.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. TJI49]
          Length = 354

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 82/298 (27%), Positives = 151/298 (50%), Gaps = 21/298 (7%)

Query: 56  SIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--AT 112
            +++D   N +      DE   PASLTK+MT Y++FE L  KK+ +   +  S+      
Sbjct: 1   WVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSEAVRRVG 60

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +M+++A+++GM+
Sbjct: 61  RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVTMMNDEAQRLGMK 120

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
            T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F+Y N    N N+LL 
Sbjct: 121 GTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFKYNNIRQGNRNRLLW 180

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRY------KDDPIVAVVMGMPTSQERDQKALELIT- 285
               +DG+KTG+T+ +G+ ++ S +           +V+V+MG     +R Q +++++  
Sbjct: 181 LDPTVDGLKTGHTQAAGYCLIASSKRAIPGSDGQRRLVSVMMGEQKESDRTQDSMKMLNY 240

Query: 286 ---SFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKKLKRTYSQFKK-IDAKA 332
              +F   +  K  Q          K+N     +K    +   +    + K  +D  A
Sbjct: 241 GYSAFDAVRLFKGGQAISTPRLYKGKENTVQVGVKSDQWVTVPRGLGDKVKPEVDVNA 298


>gi|261821229|ref|YP_003259335.1| beta-lactamase [Pectobacterium wasabiae WPP163]
 gi|261605242|gb|ACX87728.1| Beta-lactamase [Pectobacterium wasabiae WPP163]
          Length = 401

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 77/258 (29%), Positives = 134/258 (51%), Gaps = 11/258 (4%)

Query: 42  ISMASELHAKPKYSS---IVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKK 97
            + A +L A P+  +   I++D    ++      DE   PASLTK+M  Y+I + ++S K
Sbjct: 26  FTSAEQLPAVPQIDAKAFILMDHASGKVLAESNADERLDPASLTKIMASYVIGQAIKSGK 85

Query: 98  LHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
           +    ++ V K A        +  S ++LK        +    ++ +S ND S A  +++
Sbjct: 86  IRPTDEVTVGKDAWATGNPALRGSSLMFLKPGDRIPVSELNKGIVIQSGNDASIALADYV 145

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GS+  F  LM+N AK + + NT +    GL    Q +TARD A+LG  L ++ P+ Y  
Sbjct: 146 AGSQDAFVSLMNNYAKALNLTNTHFLTVHGLDAAGQYSTARDMALLGQALIRDVPEEYAL 205

Query: 212 FSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
              ++F + N    N N+LL   + N+DG+KTG+T  +G N+V S    +  +++VV+G 
Sbjct: 206 HKEKEFTFNNIRQPNRNRLLWSTNLNVDGVKTGHTNGAGHNLVASATEGNMRLISVVLGA 265

Query: 271 PTSQERDQKALELITSFL 288
            T   R +++ +L+T   
Sbjct: 266 QTDAIRFRESEKLLTWGF 283


>gi|113460464|ref|YP_718526.1| penicillin-binding protein [Haemophilus somnus 129PT]
 gi|112822507|gb|ABI24596.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Haemophilus somnus 129PT]
          Length = 388

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 83/285 (29%), Positives = 147/285 (51%), Gaps = 9/285 (3%)

Query: 25  QRNIQLMGKILFLSIIM--ISMASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLT 81
           +  I LM  ++ L  +   I            S I++D +   +   F  D+ ++PASLT
Sbjct: 3   KTKIALMSGLISLPALSQDIQYGIASPELSAQSYILMDYHSGAVLAAFNPDQRQHPASLT 62

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITR 138
           KMMT Y++ + ++  K+ L   + + ++A  +N    SK++L      +       ++  
Sbjct: 63  KMMTSYVVGDAIKQGKISLTDTVTIDESAWGKNFPGSSKMFLNLNQQVSVADLNRGIVIV 122

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND   A  E I+GSE+ F  LM+    K G++NT +    GL D NQ ++ARD AI+G
Sbjct: 123 SGNDACVAIAEHIAGSERNFIELMNKYVAKFGLKNTNFMTVHGLDDDNQYSSARDMAIIG 182

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL- 256
             +  + P+ YK ++ ++F +      N N LL  K   +DG+KTG+T  +G+N+V S  
Sbjct: 183 RHIIHDLPEEYKIYAEKEFTFNKIKQHNRNGLLWDKSIKVDGMKTGHTNKAGYNLVASAV 242

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHR 300
              +  +++VVMG+ T + R+ ++ +L+       +T K  Q ++
Sbjct: 243 NNNNMRLISVVMGVATHKGREIESKKLLQWGFANFETFKSLQANQ 287


>gi|78067705|ref|YP_370474.1| penicillin-binding protein 6 [Burkholderia sp. 383]
 gi|77968450|gb|ABB09830.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Burkholderia sp. 383]
          Length = 437

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 77/256 (30%), Positives = 136/256 (53%), Gaps = 9/256 (3%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  A         S +++D   N +      DE   PASLTK+MT Y++FE L  KK+ +
Sbjct: 70  MPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISM 129

Query: 101 NTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
              +  S+      ++ S+++++     +    +  +I +S ND + A  E + GSE +F
Sbjct: 130 EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQF 189

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             LM+++A ++GM+ T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F+
Sbjct: 190 VTLMNDEAARLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYSIFSEKEFK 249

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY------KDDPIVAVVMGMPT 272
           Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +           +V+V+MG   
Sbjct: 250 YNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEQK 309

Query: 273 SQERDQKALELITSFL 288
             ER Q +++++    
Sbjct: 310 EGERTQDSMKMLNYGY 325


>gi|296272811|ref|YP_003655442.1| beta-lactamase [Arcobacter nitrofigilis DSM 7299]
 gi|296096985|gb|ADG92935.1| Beta-lactamase [Arcobacter nitrofigilis DSM 7299]
          Length = 389

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 101/319 (31%), Positives = 164/319 (51%), Gaps = 24/319 (7%)

Query: 31  MGKILFLSIIMISMASELHAKP------------KYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           M KI+    I+ S+ ++                   S I++D +  ++   K  DE   P
Sbjct: 1   MKKIICSIFIITSLLAQCLQADEEKSIQPLINIKAKSYILMDYDTKEILLSKNTDEKLPP 60

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT YI+   + S ++ L  ++ +SK A     S+ +L   T     + I  +I 
Sbjct: 61  ASLTKLMTSYIVSTKINSGEISLKDKVFISKKAWKMTGSRTFLNVNTKVDLSKLIKGMIV 120

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND   A  E ISGSEK+F  LM+  AKK+ ++NT Y +A+GL  K+  +TA D A+L
Sbjct: 121 QSGNDAVIAIAEHISGSEKEFVKLMNKYAKKLNLKNTHYNDATGLPTKDHYSTAHDIALL 180

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              + K+FP +Y ++SI+ F+Y N    N NKLL K  ++DG+KTG+T  +G+ + +S +
Sbjct: 181 SRAIIKDFPDHYSWYSIKNFKYNNISQNNRNKLLWKDTSVDGLKTGHTMAAGYCLASSAK 240

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL-----------KHQQTHRKDNLSS 306
            K+  ++AVVMG  +S+ R +++ +L+    +               K +    K N  S
Sbjct: 241 RKNMRLIAVVMGTKSSKARAKESEKLLNYGFKYYDTHKLYTANSIIKKSKIWEGKKNEVS 300

Query: 307 TSLKKSLMIKKLKRTYSQF 325
             L K L I  ++    Q 
Sbjct: 301 LGLDKDLTITIIRSQNKQL 319


>gi|167568588|ref|ZP_02361462.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           oklahomensis C6786]
          Length = 378

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 85/313 (27%), Positives = 150/313 (47%), Gaps = 24/313 (7%)

Query: 42  ISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKK 97
            + A      P     S +++D   NQ+      DE   PASLTK+MT Y++FE L +KK
Sbjct: 7   ATYAPGAVPPPGVNARSWVLVDATSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKK 66

Query: 98  LHLNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
           + +   +  S+      ++ S+++++     +    +  +I +S ND + A  E + GSE
Sbjct: 67  ITMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 126

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
            +F  +M+ +A+++GM  T + + +G+ D    TTA D A L   L +++P YY  FS++
Sbjct: 127 AQFVNMMNAEAQRLGMTGTHFADVNGMPDPQHYTTAGDLAKLSTHLIRDYPDYYSIFSVK 186

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK-------DDPIVAVVM 268
            F Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +            +V V+M
Sbjct: 187 DFTYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRSLPGATDATRRLVTVMM 246

Query: 269 GMPTSQERDQKALELI----TSFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKK 317
           G     +R Q +++++    T+F   +  K  Q          K N     +KK   I  
Sbjct: 247 GETKESDRVQDSMKMLNYGYTAFDSVRLYKAGQAIDTPRVYKGKSNNVQVGVKKDQFITV 306

Query: 318 LKRTYSQFKKIDA 330
            +    + K   A
Sbjct: 307 PRGMADKVKPEVA 319


>gi|37679087|ref|NP_933696.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus YJ016]
 gi|37197829|dbj|BAC93667.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus YJ016]
          Length = 393

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 86/257 (33%), Positives = 137/257 (53%), Gaps = 8/257 (3%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQS 95
            + I++  A ++ AK     +++D +  ++   K+ +    PASLTKMMT Y+I + L+ 
Sbjct: 28  AAPIVVPDAPQIAAK---GFVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELER 84

Query: 96  KKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
             + L   + VSK A  +N    SK++++  T    +     +I +S ND   A  E I+
Sbjct: 85  GNISLEDDVVVSKNAWAKNFPDSSKMFIEVGTTVKVKDLNRGIIIQSGNDACVAMAEHIA 144

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           GSE  F  LM+  A  IGM NT + N  GL + N  +T  D A+LG  L ++ P  Y+ +
Sbjct: 145 GSEDAFVDLMNAWASSIGMTNTHFANVHGLDNANLYSTPYDMALLGQALIRDVPDEYRIY 204

Query: 213 SIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           S +KF Y      N N LL  K  N+DGIKTG+T N+G+++V+S       ++AVVMG  
Sbjct: 205 SEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLIAVVMGTK 264

Query: 272 TSQERDQKALELITSFL 288
               R  ++ +L++   
Sbjct: 265 DMNARKSESKKLLSYGF 281


>gi|237809572|ref|YP_002894012.1| Beta-lactamase [Tolumonas auensis DSM 9187]
 gi|237501833|gb|ACQ94426.1| Beta-lactamase [Tolumonas auensis DSM 9187]
          Length = 413

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 81/258 (31%), Positives = 139/258 (53%), Gaps = 9/258 (3%)

Query: 40  IMISMASELHAKPKYSS---IVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           +       L + P+ S+   +++D N  Q+  G   +E   PASLTKMMT Y+I + L+S
Sbjct: 43  MPAPAPVALPSPPQISAKAHLLMDYNSGQILVGENTEERLPPASLTKMMTSYVIGQELKS 102

Query: 96  KKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
            ++     + +S+ A  +N    SK++++     + +     +I +S ND   A  E I+
Sbjct: 103 GRIKPTDMVTISQNAWAKNYGDSSKMFIEVGKQVSVDNLNKGIIIQSGNDACIAMAEHIA 162

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           GSE  FA LM+  A K+GM N+ + NA GLH+ +  +TA D A +G  L ++ P  Y  +
Sbjct: 163 GSEDSFASLMNQWAAKLGMSNSHFVNAHGLHNVDHYSTAHDMARMGQALIRDLPNEYAIY 222

Query: 213 SIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY-KDDPIVAVVMGM 270
           S + F +      N N+LL  K   +DGIKTG+    G+N+V S    +   +++V++G 
Sbjct: 223 SQKDFTFNGITQHNRNRLLWDKTLVVDGIKTGHVSEVGYNLVASATGPEGMRLISVIIGS 282

Query: 271 PTSQERDQKALELITSFL 288
            + Q+R +++ +L+T   
Sbjct: 283 NSEQQRAEESKKLLTYGF 300


>gi|253997624|ref|YP_003049688.1| beta-lactamase [Methylotenera mobilis JLW8]
 gi|253984303|gb|ACT49161.1| Beta-lactamase [Methylotenera mobilis JLW8]
          Length = 392

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 93/330 (28%), Positives = 169/330 (51%), Gaps = 26/330 (7%)

Query: 30  LMGKILFLSIIMISM-------ASELHAKPK---YSSIVIDVNKNQMTGFKQDE-PRYPA 78
           +    L +S++  S        A+++   P     + ++ D N   +           PA
Sbjct: 13  ISATTLAISLVATSFTNLAHAGAAQIAPPPSLAVKAYLLKDFNNGYVIAQNNASMRVEPA 72

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           SLTK+MT Y+ F+ +++  L LN  +PVS+ A     SK++++     T ++ +  +I  
Sbjct: 73  SLTKIMTAYLAFKAVKNGHLQLNQTLPVSEHAWKTEGSKMFIEPNKPATVDELLHGMIIV 132

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND S    E I+ SE  FA +M+ +A+++GM+NT Y NA+GL D    TTA D A L 
Sbjct: 133 SGNDASITLAEGIASSEPLFAQMMNKEAERLGMKNTHYMNATGLPDPQHYTTAEDLATLA 192

Query: 199 ILLRKNFPQYYK-YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
           + L ++FP+ YK  +S++++ Y N    N N+LL    N+DG+KTG+T ++G+ ++++ +
Sbjct: 193 MALIRDFPEEYKRLYSVKEYAYNNIKQPNRNRLLWLDPNVDGMKTGHTESAGYCLISTAK 252

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFL----------EKKTLKHQQTHRKD-NLSS 306
             +   ++V++G PT   R  ++ +L+              + K +   +  + + N  +
Sbjct: 253 RDNTRYISVILGAPTDTARATESQKLLNYGFQFFDSALVYKQNKPVSKLKVWKGEVNEIN 312

Query: 307 TSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
           ++    L +   K  Y+  K I   A STQ
Sbjct: 313 STTANDLYLTLPKGEYANVKAI---ASSTQ 339


>gi|253990639|ref|YP_003041995.1| D-alanyl-D-alanine carboxypeptidase fraction A [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782089|emb|CAQ85253.1| penicillin-binding protein 5 precursor [Photorhabdus asymbiotica]
          Length = 428

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 82/256 (32%), Positives = 137/256 (53%), Gaps = 11/256 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   + I+ID N  ++      D  R PASLTKMMT Y+I + ++S K+ 
Sbjct: 62  MIPGVPQIDAE---AYILIDYNSGKVLAEMNADSHRDPASLTKMMTSYVIGQAIKSGKIG 118

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            N  + V   A        +  S ++LK     +       +  +S ND   A  ++++G
Sbjct: 119 PNDMVTVGTDAWATGNPVFKGSSLMFLKPGDQVSVSMLSRGINLQSGNDACVAMADYVAG 178

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S++ F  LM+   K +G+QNT +K   GL  + Q ++ARD A++G  L ++ P+ Y  + 
Sbjct: 179 SQESFVNLMNGYVKSLGLQNTNFKTVHGLDAEGQYSSARDMALIGQALIRDVPEEYAIYK 238

Query: 214 IRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F Y N   TN N LL  K  N+DGIKTG+T  +G+N+V S    D  +++ V+G  T
Sbjct: 239 EKEFTYNNIRQTNRNGLLWDKSLNVDGIKTGHTNAAGYNLVASATEGDMRLISAVLGGHT 298

Query: 273 SQERDQKALELITSFL 288
            + R+ ++ +L+T   
Sbjct: 299 YKGRETESKKLLTWGF 314


>gi|295675328|ref|YP_003603852.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp.
           CCGE1002]
 gi|295435171|gb|ADG14341.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp.
           CCGE1002]
          Length = 409

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 84/297 (28%), Positives = 157/297 (52%), Gaps = 14/297 (4%)

Query: 5   KIQSSAKKTFLTY-PYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP--KYSSIVIDV 61
           +  SS + +F +   +    + R I  +G +L  +++  +  +++        S +++D 
Sbjct: 2   RFSSSGRTSFPSVASFIPTSLNRAIA-VGLVLPATLVASTAFAQVPPPGVNARSWVLVDA 60

Query: 62  NKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPSKL 118
             NQ+      DE   PASLTK+MT Y++FE L +KK+ ++  I  S+       + S++
Sbjct: 61  TSNQVLASANADERVEPASLTKLMTAYLVFEALDTKKITMDQSIEPSEAVRRVRNDESRM 120

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
           +++     T    +  +I +S ND + A  E + GSE +F  +M+ +A+K+GM+NT + +
Sbjct: 121 FIEALKPVTVHDLVYGMIVQSGNDAAIALAELVGGSEAQFVDMMNKEAQKLGMKNTHFAD 180

Query: 179 ASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNID 238
            +G+ D    TTA D AIL   L +++P YY  FS+++F Y      N N+LL     +D
Sbjct: 181 VNGMPDPQHYTTAGDLAILSARLIRDYPDYYNIFSVKEFTYNKIKQPNRNRLLWIDPTVD 240

Query: 239 GIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMPTSQERDQKALELITSFL 288
           G+KTG+T+ +G+ ++ S +            +V+V+MG     +R Q +L+++    
Sbjct: 241 GLKTGHTQAAGYCLIASAKRPLPGTTDASRRLVSVMMGETKEHDRVQDSLKMLNYGY 297


>gi|167561357|ref|ZP_02354273.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           oklahomensis EO147]
          Length = 381

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 85/311 (27%), Positives = 149/311 (47%), Gaps = 24/311 (7%)

Query: 44  MASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
            A      P     S +++D   NQ+      DE   PASLTK+MT Y++FE L +KK+ 
Sbjct: 12  YAPGAVPPPGVNARSWVLVDATSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKIT 71

Query: 100 LNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           +   +  S+      ++ S+++++     +    +  +I +S ND + A  E + GSE +
Sbjct: 72  MEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQ 131

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F  +M+ +A+++GM  T + + +G+ D    TTA D A L   L +++P YY  FS++ F
Sbjct: 132 FVNMMNAEAQRLGMTGTHFADVNGMPDPQHYTTAGDLAKLSTHLIRDYPDYYSIFSVKDF 191

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK-------DDPIVAVVMGM 270
            Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +            +V V+MG 
Sbjct: 192 TYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRSLPGATDATRRLVTVMMGE 251

Query: 271 PTSQERDQKALELI----TSFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKKLK 319
               +R Q +++++    T+F   +  K  Q          K N     +KK   I   +
Sbjct: 252 TKESDRVQDSMKMLNYGYTAFDSVRLYKAGQAIDTPRIYKGKSNNVQVGVKKDQFITVPR 311

Query: 320 RTYSQFKKIDA 330
               + K   A
Sbjct: 312 GMADKVKPEVA 322


>gi|262040030|ref|ZP_06013292.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259042607|gb|EEW43616.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 389

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 77/306 (25%), Positives = 139/306 (45%), Gaps = 15/306 (4%)

Query: 26  RNIQLMGKILFLSIIMISMASELHA---KPKY---SSIVIDVNKNQMT-GFKQDEPRYPA 78
           +    +   L  S +  + A +L A    P     S +++D    Q+     + + R PA
Sbjct: 4   KGRLFIAVSLLASSVSCAFAVDLPATVAPPSIQAGSWVLMDYTTGQVLTAGNEHQQRNPA 63

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGI 132
           SLTK+MT Y++   + S ++  +  + + K A  +        S ++LK     +     
Sbjct: 64  SLTKLMTGYVVDRAIDSHRITFDDIVTMGKDAWAKGNPVFDGSSLMFLKPGDRVSVRDLS 123

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             LI  S ND   A  ++++G + +F  LM+   +K+ +++T ++   GL    Q ++A 
Sbjct: 124 RGLIVDSGNDACVALADYVAGGQPQFVALMNQYVEKLHLRDTHFETVHGLDAPGQHSSAY 183

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFN 251
           D A+L   +    P  Y  +S +   +      N N LL  K  N+DG+KTG+T  +GFN
Sbjct: 184 DLAVLSRAIIHGEPDVYHMYSQKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFN 243

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF-LEKKTLKHQQTHRKDNLSSTSLK 310
           ++ S       ++AVVMG  + + R+Q+A +L+        T++  Q  +K         
Sbjct: 244 LIASAVDGQRRLIAVVMGADSPKGREQQAAKLLHWGQQNFDTVQVLQKGQKVGTERIWYG 303

Query: 311 KSLMIK 316
               IK
Sbjct: 304 DKEQIK 309


>gi|257439156|ref|ZP_05614911.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium
           prausnitzii A2-165]
 gi|257198407|gb|EEU96691.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium
           prausnitzii A2-165]
          Length = 412

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 82/240 (34%), Positives = 127/240 (52%), Gaps = 3/240 (1%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++I+++    ++   K  DE    AS+TK+MTL + FE ++  KL L+T +PVS+ A   
Sbjct: 65  AAILMEPETGRVLYEKAPDERMPIASITKLMTLLLTFEAIRGGKLTLDTPVPVSEHAYHM 124

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+    FT ++ + A+   SAND + A  E + GSE  F   M+ +A ++GM N
Sbjct: 125 GGSQIWLEPGEQFTLDEMLRAICVSSANDAAVAVAELVGGSEPVFVEQMNARAAELGMTN 184

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIITNHNKLL 231
           T ++NA GL  +  ++TARD AIL   L    P+   Y  I     RN    + N NKLL
Sbjct: 185 TTFRNACGLDTEGHLSTARDVAILSRYLLNTCPELLHYTGIWTDSLRNGQTQLVNTNKLL 244

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
            +   I G+KTG T  +G  I  S       ++AVV+G P+S +R   A  L+       
Sbjct: 245 RRYSGITGLKTGTTSGAGVCISASATRDGLTLIAVVLGSPSSADRFHSATTLLDYGFANY 304


>gi|295109899|emb|CBL23852.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162]
          Length = 394

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 88/324 (27%), Positives = 157/324 (48%), Gaps = 25/324 (7%)

Query: 25  QRNIQLMGKILFLSIIMI----------SMASELHAKPKYSSIVIDVNKNQMTGFKQDEP 74
           +R++++ G  L + +I+           S++ E+ A    S I+++V   ++   K    
Sbjct: 3   KRHLRITGLFLIICMILSTIFPVRAETESISPEILAA---SGILMEVETGKILYEKDSNT 59

Query: 75  RY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           R  PAS+TK+MTL +IFE L S KL LN  +  S  A +   S+++L+E    + E  I 
Sbjct: 60  RRCPASVTKVMTLLLIFEQLDSGKLSLNDTVTTSAHAKSMGGSQVFLEEGEQQSVETMIK 119

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTAR 192
            ++  S ND S A  E I+GSE+ F   M+ +A+++GM+NT + +  GL D     T+A 
Sbjct: 120 CIVIASGNDASVAMAEHIAGSEQSFVNRMNQRAEELGMKNTHFVDCCGLTDSDEHYTSAY 179

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRY--------RNRIITNHNKLLNKMHNIDGIKTGY 244
           D A++   L +  PQ ++Y SI             +   +TN N+L+       G+KTG 
Sbjct: 180 DIALMSRELIRKHPQIFEYSSIWMENITHVTAQGTKKFGLTNTNRLIRTYPGCKGLKTGS 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNL 304
           T  + F +          +++VVM  P  + R + A  L+    ++ +L   +    + L
Sbjct: 240 TSKAKFCLSAVAERDGLSLLSVVMAAPDYKARLKDASALLDYGFDRCSLYIDENP--EPL 297

Query: 305 SSTSLKKSLMIKKLKRTYSQFKKI 328
              +++K +  K   +    F+ +
Sbjct: 298 PEITIQKGISSKVSLKYADTFRYV 321


>gi|27363759|ref|NP_759287.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus CMCP6]
 gi|320157161|ref|YP_004189540.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus MO6-24/O]
 gi|27359875|gb|AAO08814.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus CMCP6]
 gi|319932473|gb|ADV87337.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus MO6-24/O]
          Length = 393

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 85/257 (33%), Positives = 137/257 (53%), Gaps = 8/257 (3%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQS 95
            + +++  A ++ AK     +++D +  ++   K+ +    PASLTKMMT Y+I + L+ 
Sbjct: 28  AAPVVVPDAPQIAAK---GFVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELER 84

Query: 96  KKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
             + L   + VSK A  +N    SK++++  T    +     +I +S ND   A  E I+
Sbjct: 85  GNISLEDDVVVSKNAWAKNFPDSSKMFIEVGTTVKVKDLNRGIIIQSGNDACVAMAEHIA 144

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           GSE  F  LM+  A  IGM NT + N  GL + N  +T  D A+LG  L ++ P  Y+ +
Sbjct: 145 GSEDAFVDLMNAWASSIGMTNTHFANVHGLDNANLYSTPYDMALLGQALIRDVPDEYRIY 204

Query: 213 SIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           S +KF Y      N N LL  K  N+DGIKTG+T N+G+++V+S       ++AVVMG  
Sbjct: 205 SEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLIAVVMGTK 264

Query: 272 TSQERDQKALELITSFL 288
               R  ++ +L++   
Sbjct: 265 DMNARKSESKKLLSYGF 281


>gi|126441761|ref|YP_001057491.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei 668]
 gi|237810642|ref|YP_002895093.1| D-alanyl-D-alanine carboxypeptidase DacC [Burkholderia pseudomallei
           MSHR346]
 gi|254187919|ref|ZP_04894431.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei
           Pasteur 52237]
 gi|126221254|gb|ABN84760.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           668]
 gi|157935599|gb|EDO91269.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei
           Pasteur 52237]
 gi|237504177|gb|ACQ96495.1| D-alanyl-D-alanine carboxypeptidase DacC [Burkholderia pseudomallei
           MSHR346]
          Length = 437

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 85/310 (27%), Positives = 154/310 (49%), Gaps = 21/310 (6%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  A         S +++D + NQ+      DE   PASLTK+MT Y++FE L +KK+ +
Sbjct: 69  VPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 128

Query: 101 NTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
              +  S+      ++ S+++++     +    +  +I +S ND + A  E + GSE +F
Sbjct: 129 EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 188

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+ +A+++GM++T + + +G+ D N  TTA D A L   L +++P YY  FS+++F 
Sbjct: 189 VNMMNAEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFT 248

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMP 271
           Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +            +V V+MG  
Sbjct: 249 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGET 308

Query: 272 TSQERDQKALELI----TSFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKKLKR 320
              +R Q +++++    T+F   +  K  Q          K N     +KK   I   + 
Sbjct: 309 KESDRVQDSMKMLNYGYTAFDSVRLYKASQPIDTPRVYKGKSNNVQVGVKKDQFITVPRG 368

Query: 321 TYSQFKKIDA 330
              + K   A
Sbjct: 369 LADKVKPEVA 378


>gi|37525261|ref|NP_928605.1| D-alanyl-D-alanine carboxypeptidase fraction A [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36784688|emb|CAE13588.1| penicillin-binding protein 5 precursor (D-alanyl-D-alanine
           carboxypeptidase fraction A) (DD-peptidase)
           (DD-caroboxypeptidase) (PBP-5) [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 389

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 81/256 (31%), Positives = 138/256 (53%), Gaps = 11/256 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   + I+ID N  ++      D  R PASLTKMMT Y+I + ++S K+H
Sbjct: 23  MIPGVPQIDAE---AYILIDYNSGKVLAEMNADAHRDPASLTKMMTSYVIGQAIKSGKIH 79

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            +  + V   A        +  S ++LK     +       +  +S ND   A  ++++G
Sbjct: 80  PSDMVTVGTDAWATGNPVFKGSSLMFLKPGDQVSVSMLSRGINLQSGNDACVAMADYVAG 139

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S++ F  LM+   K +G++NT +K   GL  + Q ++ARD A++G  L ++ P+ Y  + 
Sbjct: 140 SQESFVNLMNGYVKSLGLKNTNFKTVHGLDAEGQYSSARDMALIGQALIRDVPEEYTIYK 199

Query: 214 IRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F Y N   TN N LL  K  N+DGIKTG+T  +G+N+V S    D  +++ V+G  T
Sbjct: 200 EKEFTYNNIRQTNRNGLLWDKSLNVDGIKTGHTSAAGYNLVASATEGDMRLISAVLGGHT 259

Query: 273 SQERDQKALELITSFL 288
            + R+ ++ +L+T   
Sbjct: 260 YKGRETESKKLLTWGF 275


>gi|302390892|ref|YP_003826712.1| serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum
           DSM 5501]
 gi|302202969|gb|ADL11647.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum
           DSM 5501]
          Length = 386

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 155/305 (50%), Gaps = 8/305 (2%)

Query: 31  MGKILFLSIIMISMASELHA--KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLY 87
           +  IL LS +++  +  L A      S+I+++    Q+   K   E   PAS+TK+MTL 
Sbjct: 10  IVIILVLSSLLVVASPVLAAFDIEAESAILMEAETGQVLFTKNVTEELPPASITKIMTLL 69

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           +  E + S +++L+  +  S+ A++   S++YL  K     E  + ++   SAND   A 
Sbjct: 70  LAMEAIDSGQMNLDDTVIASEFASSMGGSQIYLAPKEKMKVETLLESIAIASANDACVAL 129

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--QITTARDQAILGILLRKNF 205
           GE I+GS + F  +M+ +A ++G+++T + N++GL   +    ++ARD AI+   L    
Sbjct: 130 GEHIAGSYQNFIKMMNERASELGLKDTNFINSTGLPTDDGAHYSSARDIAIMSRELINKH 189

Query: 206 PQYYKYFSIR--KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           P+   + SI   K R     + N N L+N     DG+KTG+T  +G+ +  + +     +
Sbjct: 190 PKVLDWTSIWIDKIRNGEFTLYNTNDLINYYPGADGLKTGWTDKAGYCLAATAKRDGMRL 249

Query: 264 VAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYS 323
           ++VVM   + + R +++ +L+     +  LK +   + +++    +K+   ++    T  
Sbjct: 250 ISVVMKTDSEEARMEESAKLLNYGFSRFDLK-KVVKQGEDVGKIEVKEGEELEVKVETAE 308

Query: 324 QFKKI 328
             K +
Sbjct: 309 DLKLV 313


>gi|238751821|ref|ZP_04613308.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia rohdei ATCC
           43380]
 gi|238709950|gb|EEQ02181.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia rohdei ATCC
           43380]
          Length = 401

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 129/244 (52%), Gaps = 8/244 (3%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + +++D N  ++      D+   PASLTK+M+ Y+I + +++ K+H +  + V K A 
Sbjct: 40  AKAYVLMDYNSGKVLTEGNSDQRLDPASLTKIMSSYVIGQAIKAGKVHPDDLVTVGKDAW 99

Query: 112 T------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
                  +  S ++LK             ++ +S ND S A  ++I+GS+  F  LM+N 
Sbjct: 100 ATGNPALRGSSLMFLKPGDQVKLSDLNKGIVIQSGNDASIALADYIAGSQDSFVGLMNNY 159

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
           AK +G+ NT +    GL    Q +TARD A+LG  L ++ P+ Y     ++F +      
Sbjct: 160 AKALGLDNTHFMTVHGLDAPGQYSTARDMAVLGQALIRDVPEEYALHKEKEFTFNKIRQI 219

Query: 226 NHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N+LL   + N+DG+KTG+T  +G N+V S       +++VV+G P+ + R  ++ +L+
Sbjct: 220 NRNRLLWSTNINVDGMKTGFTTGAGHNLVASATDGPMRLISVVLGAPSDRVRFSESEKLL 279

Query: 285 TSFL 288
           T   
Sbjct: 280 TWGF 283


>gi|259417976|ref|ZP_05741895.1| serine-type D-Ala-D-Ala carboxypeptidase [Silicibacter sp.
           TrichCH4B]
 gi|259346882|gb|EEW58696.1| serine-type D-Ala-D-Ala carboxypeptidase [Silicibacter sp.
           TrichCH4B]
          Length = 559

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 98/264 (37%), Positives = 151/264 (57%), Gaps = 2/264 (0%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
           L L++ ++++  E  A   Y+++V+D    ++   +  D   +PASLTKMMTLYI FE +
Sbjct: 46  LTLAVGLVAVVPEQAAAAPYAAMVMDARTGEVLHSRNADTRLHPASLTKMMTLYIAFEAV 105

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           ++ ++ L+T+I VS+ A  + PS+L L+          I A   +SAND +TA GE ISG
Sbjct: 106 RNGEISLDTEITVSRNAEAEPPSELGLRRGQKIALRYLIRAAAVKSANDAATAIGEAISG 165

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           SE  FA  M+  AK +GM  T +KNA GL     ++TARD  ILG  +  ++P+YY  FS
Sbjct: 166 SEAAFARRMNRTAKALGMTRTTFKNAHGLTANGHMSTARDMTILGRHMLYDYPEYYNLFS 225

Query: 214 IRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            +      +++ N N + L      DGIKTGYTR +GFN+V+S +  D+ I+A V G  +
Sbjct: 226 RKSTNAGTKVVYNTNRRFLAAYRGADGIKTGYTRAAGFNLVSSAKRGDERIIATVFGGQS 285

Query: 273 SQERDQKALELITSFLEKKTLKHQ 296
           +  R+ K  EL+     +     +
Sbjct: 286 TAARNAKVAELLDLGFRRAPAYAK 309


>gi|222086064|ref|YP_002544596.1| serine-type D-Ala-D-Ala carboxypeptidase protein [Agrobacterium
           radiobacter K84]
 gi|221723512|gb|ACM26668.1| serine-type D-Ala-D-Ala carboxypeptidase protein [Agrobacterium
           radiobacter K84]
          Length = 504

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 120/274 (43%), Positives = 169/274 (61%), Gaps = 7/274 (2%)

Query: 29  QLMGKILF------LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLT 81
           + + K+LF       +I M   AS      KY+ IVID N   +   +  D   YPASLT
Sbjct: 22  KFLAKMLFGLAVSTATITMTVDASYAAGGSKYAGIVIDANTGNVLYSENADTLHYPASLT 81

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           KMMT+Y+ FE L+S ++ L+T +  SK AA Q P+KL +      T  + IL ++T+SAN
Sbjct: 82  KMMTVYLTFEALESGRITLDTPVVFSKNAAMQAPTKLGIGTGRSVTVREAILGIVTKSAN 141

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D + A GE + GSE  FA +M++KA+ +GM  T Y+N +GL +  Q+TTARDQA LGI L
Sbjct: 142 DAAMALGEMLGGSEDNFARMMNDKARMLGMTRTTYRNPNGLPNTAQMTTARDQARLGIAL 201

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           R++FPQYY  FS   FR  NR+I  HN LL  +  +DGIKTGYTR +G+N+ TS++    
Sbjct: 202 REHFPQYYGLFSTTSFRLGNRVIPGHNHLLGSVRGVDGIKTGYTRAAGYNLATSVKVDGR 261

Query: 262 PIVAVVMGMPTSQERDQKALELITSFLEKKTLKH 295
            IV VV+G  ++  RD +  +LI ++L   + KH
Sbjct: 262 SIVGVVLGGASTPARDNQMRKLIATYLPVASTKH 295


>gi|319783686|ref|YP_004143162.1| beta-lactamase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169574|gb|ADV13112.1| Beta-lactamase [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 469

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 120/310 (38%), Positives = 181/310 (58%), Gaps = 5/310 (1%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLY 87
            +M   L ++ +   +AS L AK   ++IV+D    ++         RYPASLTKMMTLY
Sbjct: 18  TMMIIALAMTFVFGDVASSLAAK--QAAIVVDAKTGKVLYSADANGRRYPASLTKMMTLY 75

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + FE +   K+  NT +  S  A+ + P+KL +K     T E  IL+++T+SAND +TA 
Sbjct: 76  LTFEAMAKGKISRNTPVVFSAKASAEAPTKLGVKPGGSVTVETAILSIVTKSANDSATAL 135

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
           GE + G+E  FA +M+ KA+ +GM  T+++NA+GL D  Q TTARD A LGI LR++FPQ
Sbjct: 136 GEMLGGNETTFARMMTAKARALGMNGTVFRNANGLPDPGQFTTARDMATLGIALREHFPQ 195

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           YY YFS R F Y  + I  HN+LL ++  +DGIKTGYTR SGFN+V+S+   +  IV VV
Sbjct: 196 YYGYFSQRSFLYGRQRINGHNRLLGRIKGVDGIKTGYTRASGFNLVSSVSDGNRRIVGVV 255

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKHQQ--THRKDNLSSTSLKKSLMIKKLKRTYSQF 325
           MG  + + RD +   LI ++L + + +       +    +  +    +++ K        
Sbjct: 256 MGGSSGRSRDNQMASLINTYLPRASTRGGGDLVAKAGGNNPVTALAQVLLPKHDAPTPDD 315

Query: 326 KKIDAKAHST 335
           K + A+  +T
Sbjct: 316 KPVVAQDDAT 325


>gi|117619099|ref|YP_857750.1| penicillin-binding protein [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117560506|gb|ABK37454.1| penicillin-binding protein [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 396

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 80/255 (31%), Positives = 133/255 (52%), Gaps = 9/255 (3%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKL 98
           +++  A E+ AK     I+ID    Q+   +  E R  PASLTKMMT YII + L    +
Sbjct: 32  VVVPAAPEISAKAH---ILIDYYSGQVLAEQNAEERLPPASLTKMMTSYIIGQELLKGNI 88

Query: 99  HLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                + +S+ A ++N    SK++++     + +     +I +S ND   A  EF++GS 
Sbjct: 89  KRTDMVTISQNAWSKNYSDSSKMFIEVGKQVSVDDLNKGIIIQSGNDACVAMAEFLAGST 148

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             FA LM++ A K+GM ++ + N  GL  +   +TA D A LG  L ++ P  YK ++ +
Sbjct: 149 DSFASLMNSWAAKLGMNDSHFMNPHGLDAEGHYSTAHDMARLGQALIRDLPDEYKIYAQK 208

Query: 216 KFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYK-DDPIVAVVMGMPTS 273
            F +      N N+LL  +   +DGIKTG+    G+N+V+S        ++AVV+G  + 
Sbjct: 209 SFVFNGITQHNRNRLLWDQSLQVDGIKTGHVSQVGYNLVSSATNNEGMRLIAVVLGASSE 268

Query: 274 QERDQKALELITSFL 288
             R  ++ +L+T   
Sbjct: 269 ASRAAESKKLLTYGF 283


>gi|67906493|gb|AAY82600.1| predicted penicillin-binding protein 6 precursor [uncultured
           bacterium MedeBAC35C06]
          Length = 380

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 71/265 (26%), Positives = 135/265 (50%), Gaps = 8/265 (3%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
            ++ A +L  K   + I+I+     +      D    PAS+TK+MT Y++ + + +  ++
Sbjct: 21  FVAPAPKLDLK---AYILIEPQTGTVIAEYNSDLHVEPASMTKIMTGYVVADQIGNDLIN 77

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           LN  + +S+ A     SK++++     + E  +  +I +S ND S A  E+  G+E+ F 
Sbjct: 78  LNDSVLISERAWRMGGSKMFIEAGKRVSVEDLLKGVIIQSGNDASVALAEYSGGTEEGFV 137

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            LM+  A+ +GM NT + N++GL  +   ++A+D A L       FP+ Y  +  + F +
Sbjct: 138 DLMNAYAQSLGMNNTTFLNSTGLPAEGHYSSAKDLAYLTSNFINKFPEIYSLYKEKSFEF 197

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            +    N NKLL +  + DG+KTG+T ++G+ +V S +     ++ VV G  + ++R   
Sbjct: 198 NSIKQLNRNKLLWRDDSSDGVKTGHTESAGYCLVGSAKRGGMRLITVVAGSSSDKKRFDD 257

Query: 280 ALELITSFL----EKKTLKHQQTHR 300
              L+         ++ LK  Q ++
Sbjct: 258 TQRLLEYGFRFFSTQEVLKKDQVYK 282


>gi|119470843|ref|ZP_01613454.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Alteromonadales bacterium TW-7]
 gi|119446070|gb|EAW27349.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Alteromonadales bacterium TW-7]
          Length = 390

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 137/271 (50%), Gaps = 8/271 (2%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGF-KQDEPRYPASLT 81
           + ++ +  ++  + +  + A  + A P+ ++    ++D    ++    + D    PASLT
Sbjct: 10  KILKGVCGLVCSAAVFSASAQIIPAPPQVNAKGYFLVDFTTGKVIAEGEADTKLAPASLT 69

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITR 138
           KMMT Y+I   ++   +     + +S+ A  +N    SK++++     + ++    +I +
Sbjct: 70  KMMTSYVIGTEIKVGNIAPTDMVTISEKAWAKNFPESSKMFIEVGKQISVDELNHGIIIQ 129

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND   A  E I+GSE  FA LM+  A K+GM N+ + N+ GL      TT RD A L 
Sbjct: 130 SGNDACVAMSEHIAGSESAFADLMNAHAAKLGMTNSHFINSHGLDTDEHYTTPRDMATLS 189

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLR 257
             L ++ P+ Y  +  + + Y      N N LL     ++DGIKTG+T  +G+++VTS  
Sbjct: 190 AALIRDVPEEYAIYKEKSYTYNGIKQYNRNSLLWDESLDVDGIKTGHTSEAGYSLVTSAT 249

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFL 288
                ++AVVMG  + + R  ++ +L+    
Sbjct: 250 KNGMRLIAVVMGTSSERARKVESKKLLNYGF 280


>gi|114569833|ref|YP_756513.1| Serine-type D-Ala-D-Ala carboxypeptidase [Maricaulis maris MCS10]
 gi|114340295|gb|ABI65575.1| Serine-type D-Ala-D-Ala carboxypeptidase [Maricaulis maris MCS10]
          Length = 450

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 113/282 (40%), Positives = 176/282 (62%), Gaps = 6/282 (2%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFKQDE-PRYPA 78
           +  + ++ +L+  IL  S+ ++ +++  HA   +Y++ V++ N   +   ++ E  R+PA
Sbjct: 6   AAPMIKSARLL--ILSCSLALLGLSTPAHANNSRYAAFVVEENTGVVLHSRRSEAERFPA 63

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           SLTKMMTLY++F+ L++ ++ LN  I +S  AA  +PS+L L   +  + E  I AL+ +
Sbjct: 64  SLTKMMTLYMLFDALEAGEIGLNDPIRISANAANASPSRLGLAPGSTISAENAIRALVVK 123

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           SANDV+ A GE + G E +F  LM+ +A +IG+ NT ++NASGL +  Q TTARD A L 
Sbjct: 124 SANDVAVAVGERLGGGESRFGELMTARAAEIGLTNTTFRNASGLPNSRQTTTARDMARLA 183

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
           I L ++FPQY+ YF+   FRY  R   NHN L+ ++  +DG+KTGY R SGFN+V S   
Sbjct: 184 IALHRDFPQYFDYFNEETFRYNGRTYRNHNSLVGRVRGVDGLKTGYIRASGFNVVVSAER 243

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
            D  ++ V+MG P++  RD  A ELI +     TL+ +Q  R
Sbjct: 244 DDHRLITVIMGGPSAAARDAHAEELIEAAF--ATLEQRQDTR 283


>gi|296447357|ref|ZP_06889284.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus
           trichosporium OB3b]
 gi|296255136|gb|EFH02236.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus
           trichosporium OB3b]
          Length = 552

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 109/276 (39%), Positives = 164/276 (59%), Gaps = 1/276 (0%)

Query: 52  PKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P +++IV+D N  +    + ++E R+PAS+TK+MTLY++FE L+  +L L++ + +S  A
Sbjct: 80  PAFAAIVVDANTGRTLYGRSENELRHPASITKVMTLYLLFEQLEKGRLRLDSPLVISAHA 139

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A Q+P+KL L        E  I A++T+SAND++ A  E I+G E  FA LM+ KA  +G
Sbjct: 140 AAQSPTKLGLPPGQTIDVENAIKAVVTKSANDIAVAIAENIAGDEDAFAELMTRKAHSLG 199

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M  T Y NASGL +  QITTARD A+LG  ++  FP YY+YFS   F YR +   NHN L
Sbjct: 200 MTRTHYANASGLPNDAQITTARDLAVLGRAIQDRFPHYYRYFSTYSFTYRGQAHRNHNHL 259

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L ++  +DGIKTGYTR SGFN+++S+R     IVAVV+G  +   RD     LI   + +
Sbjct: 260 LGQIEGVDGIKTGYTRASGFNLLSSVRRGGRHIVAVVLGGTSGPSRDHIMAGLIAQHIGE 319

Query: 291 KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
                      +N  +   +  ++ ++     +Q +
Sbjct: 320 GDQARTARAITENEPAAPAETDVVAEEEDAPAAQSE 355


>gi|295399047|ref|ZP_06809029.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978513|gb|EFG54109.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 393

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 88/322 (27%), Positives = 161/322 (50%), Gaps = 26/322 (8%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYS-------------SIVIDVNKNQMTGFKQ-DEP 74
           QL+  +LF S+ + +++S +HA+ K S             +I+I+ +   +   K  +E 
Sbjct: 4   QLIRLLLFASVFLFTISSYVHAEEKKSTARGIELANEARSAILIERDTGAVLYEKNANEK 63

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
             PAS+TK+MT+ +I E +   +L    ++  S+ AA+   S+++L+     T ++ +  
Sbjct: 64  LPPASMTKIMTMLLIMEAIDKGELSYKEKVRASEYAASMGGSQIFLEPGEEMTVDELLRG 123

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +   S ND S A  E I+GSE+ F  +M+ KAK++G++NT ++NA+GL  K   ++A D 
Sbjct: 124 IAIGSGNDASVALAERIAGSEEAFVEMMNKKAKELGLKNTSFQNATGLPAKGHYSSAHDM 183

Query: 195 AILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
           AI+   L K +    KY S     +R+   +   + N N+L+     +DG+KTG+T  + 
Sbjct: 184 AIMARELLK-YEDITKYTSKYEDYLRENTDKKFWLVNTNRLVKFYPGVDGLKTGFTSEAK 242

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT----LKHQQTHRKDNLS 305
           + +  + +     ++AVV G PT +ER+ +   ++     +      LK  +     N+S
Sbjct: 243 YCLTATAKKNGMRVIAVVFGAPTPKERNAQITRMLDYAFSQYKTHPVLKRNEVVAHANVS 302

Query: 306 STSLKKSLMIKKLKRTYSQFKK 327
               KK  +        S   K
Sbjct: 303 --KGKKKTVALVTSEPISVLTK 322


>gi|254295961|ref|ZP_04963418.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei
           406e]
 gi|157805850|gb|EDO83020.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei
           406e]
          Length = 437

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 85/310 (27%), Positives = 154/310 (49%), Gaps = 21/310 (6%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  A         S +++D + NQ+      DE   PASLTK+MT Y++FE L +KK+ +
Sbjct: 69  VPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 128

Query: 101 NTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
              +  S+      ++ S+++++     +    +  +I +S ND + A  E + GSE +F
Sbjct: 129 EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 188

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+ +A+++GM++T + + +G+ D N  TTA D A L   L +++P YY  FS+++F 
Sbjct: 189 VNMMNAEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFT 248

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMP 271
           Y N    N N+LL     +DG+KTG+T+ +G+ ++ S +            +V V+MG  
Sbjct: 249 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGET 308

Query: 272 TSQERDQKALELI----TSFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKKLKR 320
              +R Q +++++    T+F   +  K  Q          K N     +KK   I   + 
Sbjct: 309 KESDRVQDSMKMLNYGYTAFDSVRLYKASQPIDTPRVYKGKSNNVQVGVKKDQFITVPRG 368

Query: 321 TYSQFKKIDA 330
              + K   A
Sbjct: 369 LADKVKPEVA 378


>gi|51595441|ref|YP_069632.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia
           pseudotuberculosis IP 32953]
 gi|153946853|ref|YP_001401914.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia
           pseudotuberculosis IP 31758]
 gi|51588723|emb|CAH20334.1| putative penicillin-binding protein 5 [Yersinia pseudotuberculosis
           IP 32953]
 gi|152958348|gb|ABS45809.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pseudotuberculosis IP
           31758]
          Length = 400

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 81/279 (29%), Positives = 142/279 (50%), Gaps = 19/279 (6%)

Query: 29  QLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNKNQMTGF-KQDEPRY 76
           +++  +   ++I++S A             +      + I+ID N  ++      D  R 
Sbjct: 8   RIIKSLALGTVIVMSAANADDVNLKTMIPGVPQIDAEAYILIDYNSGKVLAEMNADTRRN 67

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQ 130
           PASLTKMMT Y+I + ++S K+  +  + V K A        +  S ++LK        +
Sbjct: 68  PASLTKMMTSYVIGQAIKSGKIGADDMVTVGKDAWATGNPEFKGSSLMFLKPGDRVPVSK 127

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               +  +S ND   A  ++++GS+  F  LM+N  K +G+QNT +K   GL  + Q ++
Sbjct: 128 LTRGINLQSGNDACVAMADYVAGSQDSFVNLMNNYVKALGLQNTHFKTVHGLDAEGQFSS 187

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSG 249
           ARD A++G  L ++ P  Y  +  ++F + N   TN N LL     N+DGIKTG+T  +G
Sbjct: 188 ARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQTNRNGLLWDTSLNVDGIKTGHTEAAG 247

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +N+V S       +++VV+G  T + R+ ++ +L+T   
Sbjct: 248 YNLVASATDGQMRLISVVLGGHTFKGRETESKKLLTWGF 286


>gi|153215272|ref|ZP_01949916.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 1587]
 gi|124114811|gb|EAY33631.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 1587]
          Length = 389

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 81/318 (25%), Positives = 153/318 (48%), Gaps = 8/318 (2%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASL 80
             ++ ++  M  +  L    +++  E         ++ID +  ++           PASL
Sbjct: 6   FLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPASL 65

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALIT 137
           TK+MT Y+  + ++   +H + Q+ +S  A  +   + SK++++  TY         LI 
Sbjct: 66  TKLMTSYVAGQEMKRGNIHTDDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLIV 125

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL +    +T  D A+L
Sbjct: 126 QSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIALL 185

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
           G  + ++ P+ Y  +S   F Y      N N LL  +  N+DG+KTGYT  +G+++ +S 
Sbjct: 186 GRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASSA 245

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKDNLSSTSLKKSL 313
              +  +++VVMG  + + R+ ++ +L++    F E  T   + T  ++       K  +
Sbjct: 246 TSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDTVIQNQRLWYGDKNEV 305

Query: 314 MIKKLKRTYSQFKKIDAK 331
            +      Y    + D K
Sbjct: 306 ALGSADTVYLTLPRSDVK 323


>gi|209548202|ref|YP_002280119.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209533958|gb|ACI53893.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 427

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 103/263 (39%), Positives = 165/263 (62%), Gaps = 3/263 (1%)

Query: 33  KILFLSIIMISMA--SELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYII 89
           + L  +++ +++A  + L A    +S+V+D    ++   +  +   +PASLTKMMTLY+ 
Sbjct: 2   RTLLAAVLTVTLAVSAPLAALAGSASLVLDARTGKVLAAENADTLNHPASLTKMMTLYLT 61

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           FE L+  K+  +T I +SK AA++ P+KL +K     T  + +  +I +SAND ++A GE
Sbjct: 62  FEALKRGKIAWDTPIKMSKYAASRPPTKLGVKAGGTITVREAVYGMIIKSANDAASAMGE 121

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            + GSE  FA +M+ KA+++GM  T++ NASGL D  Q+TTARD + L I L KN+P  Y
Sbjct: 122 KLGGSESGFARMMTAKARQLGMSRTVFVNASGLPDGRQVTTARDMSTLAIALMKNYPNEY 181

Query: 210 KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           + FS+  F +R R +  HN L+ +   +DGIKTGYT  SGFN+V+++R  +  +V VV+G
Sbjct: 182 RLFSVASFNFRGRTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVVGVVLG 241

Query: 270 MPTSQERDQKALELITSFLEKKT 292
             T++ RD K   L+  +L + +
Sbjct: 242 GRTARSRDDKMAGLLDRYLGRAS 264


>gi|300705317|ref|YP_003746920.1| d-alanyl-d-alanine carboxypeptidase [Ralstonia solanacearum
           CFBP2957]
 gi|299072981|emb|CBJ44338.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
           [Ralstonia solanacearum CFBP2957]
          Length = 398

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 89/267 (33%), Positives = 150/267 (56%), Gaps = 14/267 (5%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A ++ A+   + ++ DV   Q+ G    DE   PASLTK+MT YI FE ++  KL  +  
Sbjct: 37  APQVTAR---AWMLTDVTSGQVLGGGNMDERVEPASLTKLMTAYIAFEAVRDGKLKYDQL 93

Query: 104 IPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
           I  ++T      + S+++L+     +  + +  LI +S ND +    E + G+E  F +L
Sbjct: 94  ITPTETVRTVKTDESRMFLQAGKPVSVRELLQGLIVQSGNDAALVLAEAVGGTETNFVML 153

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           M+ +A+++GM+NT + NA+GL D N  TTARD +IL   L KNFPQ YK++S ++F Y N
Sbjct: 154 MNREAERLGMKNTHFMNAAGLPDPNHYTTARDLSILTAALIKNFPQDYKFYSQKEFTYNN 213

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMPTSQ 274
               N N+LL     +DG KTG+T+++G+ +VTS              +++V++G  + Q
Sbjct: 214 IKQPNRNRLLWLDPTVDGGKTGHTKSAGYCLVTSANRPLPDVPGASRRLLSVIVGTKSDQ 273

Query: 275 ERDQKALELITSFLE-KKTLKHQQTHR 300
            R Q++L+++    +   TL+     +
Sbjct: 274 IRTQESLKVLNYGYQFFDTLRLYDAQQ 300


>gi|209884896|ref|YP_002288753.1| serine-type D-Ala-D-Ala carboxypeptidase [Oligotropha
           carboxidovorans OM5]
 gi|209873092|gb|ACI92888.1| serine-type D-Ala-D-Ala carboxypeptidase [Oligotropha
           carboxidovorans OM5]
          Length = 587

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 118/337 (35%), Positives = 182/337 (54%), Gaps = 14/337 (4%)

Query: 14  FLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHA-------------KPKYSSIVID 60
                + S  I R + L    + +++++   A                   P ++SI++D
Sbjct: 1   MFGVTFASGGIARYLTLALATVSITVMLTDHADARRRHHHHRAHVERSVYNPPFASIIVD 60

Query: 61  VNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119
            N          D  R+PASLTK+MTLY++FE +++ KL L++Q+ VS+ A+ Q P+KL 
Sbjct: 61  ANSGATLQSTNADATRHPASLTKIMTLYMLFEQIENGKLRLDSQLEVSRHASAQAPTKLG 120

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           L+       E  I  ++TRSAND S    E I+GSE+ FA +M+ KA+ +GM NT Y NA
Sbjct: 121 LRPGQTIRVEDAIKGIVTRSANDASVVVAEAIAGSEEGFAKMMTRKARALGMNNTTYVNA 180

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDG 239
           SGL D +QITTARDQA LG  ++  FP+YY+YFS   F +R R I NHN LL ++  +DG
Sbjct: 181 SGLPDSDQITTARDQATLGRAIQDRFPKYYRYFSTSVFTWRGRPIRNHNHLLGRVEGVDG 240

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTH 299
           IKTGY R SGFN+V+++R  +  +V VV+G  TS  RD    +L+ ++L+  + +     
Sbjct: 241 IKTGYIRASGFNLVSNIRRGNRHLVGVVLGGRTSGARDATMRKLLATYLDDASTRRTVAA 300

Query: 300 RKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
             +   + +    +      +   +   I       +
Sbjct: 301 ITERTPAGTTPAKMEQPVAAKPSPRPAPIQVATAQPE 337


>gi|238755056|ref|ZP_04616404.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia ruckeri ATCC
           29473]
 gi|238706760|gb|EEP99129.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia ruckeri ATCC
           29473]
          Length = 403

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 78/275 (28%), Positives = 139/275 (50%), Gaps = 17/275 (6%)

Query: 31  MGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGF-KQDEPRYPASL 80
           +G ++ +S   ++ A +++ K            + ++ID N  ++      D  R PASL
Sbjct: 15  LGTVIVISATSVANADDVNMKTMIPGVPQIDAEAYVLIDYNSGKVLAEMNADARRNPASL 74

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILA 134
           TKMMT Y+I + ++S K+     + V K A        Q  S ++LK        +    
Sbjct: 75  TKMMTSYVIGQAIKSGKIGPEDMVTVGKDAWATGNPVFQGSSLMFLKPGDQVPVSKLTRG 134

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +  +S ND   A  ++++GS+  F  LM+N    +G++NT +K   GL  + Q ++ARD 
Sbjct: 135 INLQSGNDACVAMADYVAGSQDSFVNLMNNYVNALGLKNTHFKTVHGLDAEGQYSSARDM 194

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIV 253
           A++G  L ++ P  Y  +  ++F + N    N N LL     N+DGIKTG+T  +G+N+V
Sbjct: 195 ALIGQALIRDVPDEYAIYKEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTDAAGYNLV 254

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            S       +++ V+G  T + R+ ++ +L+T   
Sbjct: 255 ASATEGQMRLISAVLGGHTYKGRETESKKLLTWGF 289


>gi|294338753|emb|CAZ87085.1| putative Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
           [Thiomonas sp. 3As]
          Length = 393

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 70/259 (27%), Positives = 134/259 (51%), Gaps = 9/259 (3%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSK 96
           +++      +L A+   + +V+D+   Q+        +  PASLTK+MT Y+ F+ L+  
Sbjct: 31  AMLATVPPPKLDAR---AWLVVDLTSGQILAEHDAHAQEAPASLTKLMTAYLTFKALKEG 87

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
            + LN  +  SK A     S++++  +   +    +L +I +S ND +    + + GS  
Sbjct: 88  TIKLNQMVTESKEAWQTGGSRMFIDPRVPVSVNDLLLGMIVQSGNDAAMTLAQTVGGSVS 147

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP-QYYKYFSIR 215
            F  +M+ +A++ G++ T + + +GL D    TTA D +I+   + ++FP  Y +YF ++
Sbjct: 148 AFVAMMNRQAQQWGLKGTHFMDPTGLPDPGHHTTAYDLSIIATHIIRDFPADYARYFKVK 207

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY----KDDPIVAVVMGMP 271
           +F Y +    N   LL    ++DG+KTGYT  +G+ ++TS           ++ VVMG P
Sbjct: 208 EFTYNHITQPNRVSLLFTDPSVDGMKTGYTSEAGYCMITSALRQFPNGPRRLLTVVMGTP 267

Query: 272 TSQERDQKALELITSFLEK 290
           T + R +++  L+    + 
Sbjct: 268 TERARGEESQVLLNWAYQN 286


>gi|269467932|gb|EEZ79667.1| D-alanyl-D-alanine carboxypeptidase [uncultured SUP05 cluster
           bacterium]
          Length = 379

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 81/263 (30%), Positives = 141/263 (53%), Gaps = 7/263 (2%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQS 95
            +I +   A  + A    S IV+D N  ++    K  + R PASLTK+MT Y++F+ ++ 
Sbjct: 27  AAIFITPKAPSISA---SSYIVLDYNSGKVIASHKPHDKRAPASLTKLMTAYVVFQLIKD 83

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
            +  L   + +SK A     SK +++       +  +  +I +S ND + A  E I+G+E
Sbjct: 84  GRASLEDDVRISKKAWKTMGSKSFVEVGKTIKLKILLKGMIIQSGNDAAVALAEHIAGTE 143

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             F   M+  A ++GM NT ++NASGL  K+Q TTA D A L     ++FP++Y ++S +
Sbjct: 144 GTFTAYMNQYAAELGMNNTRFENASGLDYKDQHTTASDMAKLASATIRDFPEFYPWYSEK 203

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           +F Y +    N NKLL   + +DG+KTG+T  + +N+V S       +++VV+G  + + 
Sbjct: 204 EFTYHDIKQRNRNKLLWSDNTVDGLKTGFTEKAQYNLVASANRMGMRLISVVLGSSSGES 263

Query: 276 RDQKALELIT---SFLEKKTLKH 295
           R  +  +++     F E + +  
Sbjct: 264 RTAQTQKVLDYGFRFFETRIIDK 286


>gi|206559102|ref|YP_002229862.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia cenocepacia
           J2315]
 gi|198035139|emb|CAR51013.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein
           precursor) [Burkholderia cenocepacia J2315]
          Length = 436

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 87/312 (27%), Positives = 152/312 (48%), Gaps = 21/312 (6%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  A         S +++D   N +      DE   PASLTK+MT Y++FE L  KK+ +
Sbjct: 69  MPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISM 128

Query: 101 NTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
              +  S       ++ S+++++     +    +  +I +S ND + A  E + GSE +F
Sbjct: 129 EQIVTPSDAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQF 188

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             LM+++A ++GM+ T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F+
Sbjct: 189 VTLMNDEAARLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFK 248

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY------KDDPIVAVVMGMPT 272
           Y N    N N+LL     +DG+KTG+T+ +GF ++ S +           +V+V+MG   
Sbjct: 249 YNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGFCLIASAKRAIPGVDGQRRLVSVMMGEQK 308

Query: 273 SQERDQKALELIT----SFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKKLKRT 321
             +R Q +++++     +F   +  K  Q          KDN     +K        +  
Sbjct: 309 ENDRTQDSMKMLNYGYSAFDSVRLFKGGQAISTPRIYKGKDNTVQVGVKGDQWATVPRGL 368

Query: 322 YSQFK-KIDAKA 332
             + K ++D  A
Sbjct: 369 GDKVKTEVDVNA 380


>gi|15601038|ref|NP_232668.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121587136|ref|ZP_01676912.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 2740-80]
 gi|121728082|ref|ZP_01681119.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V52]
 gi|147671927|ref|YP_001215796.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395]
 gi|153823905|ref|ZP_01976572.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33]
 gi|227811892|ref|YP_002811902.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae M66-2]
 gi|229506574|ref|ZP_04396083.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae BX 330286]
 gi|229510630|ref|ZP_04400110.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33]
 gi|229517239|ref|ZP_04406684.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC9]
 gi|229606053|ref|YP_002876757.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MJ-1236]
 gi|254850532|ref|ZP_05239882.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MO10]
 gi|298500115|ref|ZP_07009921.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MAK 757]
 gi|9657668|gb|AAF96181.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121548672|gb|EAX58722.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 2740-80]
 gi|121629630|gb|EAX62051.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V52]
 gi|126518573|gb|EAZ75796.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33]
 gi|146314310|gb|ABQ18850.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395]
 gi|227011034|gb|ACP07245.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae M66-2]
 gi|227014938|gb|ACP11147.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395]
 gi|229345275|gb|EEO10248.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC9]
 gi|229353075|gb|EEO18015.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33]
 gi|229356925|gb|EEO21843.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae BX 330286]
 gi|229372539|gb|ACQ62961.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MJ-1236]
 gi|254846237|gb|EET24651.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MO10]
 gi|297542096|gb|EFH78147.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MAK 757]
          Length = 389

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 81/318 (25%), Positives = 153/318 (48%), Gaps = 8/318 (2%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASL 80
             ++ ++  M  +  L    +++  E         ++ID +  ++           PASL
Sbjct: 6   FLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPASL 65

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALIT 137
           TK+MT Y+  + ++   +H + Q+ +S  A  +   + SK++++  TY         LI 
Sbjct: 66  TKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLIV 125

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL +    +T  D A+L
Sbjct: 126 QSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIALL 185

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
           G  + ++ P+ Y  +S   F Y      N N LL  +  N+DG+KTGYT  +G+++ +S 
Sbjct: 186 GRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASSA 245

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKDNLSSTSLKKSL 313
              +  +++VVMG  + + R+ ++ +L++    F E  T   + T  ++       K  +
Sbjct: 246 TSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDTVIQNQRLWYGDKNEV 305

Query: 314 MIKKLKRTYSQFKKIDAK 331
            +      Y    + D K
Sbjct: 306 ALGSADTVYLTLPRSDVK 323


>gi|212638842|ref|YP_002315362.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus
           WK1]
 gi|212560322|gb|ACJ33377.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus
           WK1]
          Length = 387

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 86/328 (26%), Positives = 158/328 (48%), Gaps = 16/328 (4%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELH---AKPKYSSIVIDVNKNQMTGFKQD-EPRYP 77
           + ++R    +  +L    I+   A +     A    S+I+I+ +   +   K   EP  P
Sbjct: 1   MEMKRFFYALAIVLLFVPIVSVHAEQPKVELATEARSAILIERDTGAILYEKNAHEPLPP 60

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MT+ +I E +   KL L+ ++  S+ AA+   S+++L+     T +  +  +  
Sbjct: 61  ASMTKIMTMLLIMEAIDQGKLKLDERVRASEYAASMGGSQIFLEPGEEMTVDDLLKGIAI 120

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND S A  E I+GSE+ F  LM+ KA+++G+++T ++N +GL  KN  +TA D A++
Sbjct: 121 GSGNDASVALAERIAGSEEAFVHLMNEKARQLGLKHTAFENTTGLPAKNHYSTAYDMAMM 180

Query: 198 GILLRKNFPQYYKYFSI-----RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
              L K +    KY        R+   +   + N N+L+     +DG+KTGYT  + + +
Sbjct: 181 AKELLK-YDLITKYTGTYEDYLRENTDKKFWLVNTNRLVKFYPGVDGLKTGYTSEAKYCL 239

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE----KKTLKHQQTHRKDNLSSTS 308
             + +  +  ++AVV G PT + R+ +  +++         K   K  +T     L  + 
Sbjct: 240 TATAKKGNMRVIAVVFGAPTPKARNAQITKMLDYAFSHYETKPLYKKGETITM--LPVSK 297

Query: 309 LKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
            KK  +        S   K   K+ + +
Sbjct: 298 GKKKSVAVVTSEPISVLLKKGEKSDAVK 325


>gi|207727766|ref|YP_002256160.1| penicillin-binding protein (d-alanyl-d-alanine carboxypeptidase)
           [Ralstonia solanacearum MolK2]
 gi|206591007|emb|CAQ56619.1| penicillin-binding protein (d-alanyl-d-alanine carboxypeptidase)
           [Ralstonia solanacearum MolK2]
          Length = 398

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 88/267 (32%), Positives = 150/267 (56%), Gaps = 14/267 (5%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A ++ A+   + ++ DV   Q+ G    DE   PASLTK+MT YI FE ++  KL  +  
Sbjct: 37  APQVTAR---AWMLTDVTSGQVLGGGNMDERVEPASLTKLMTAYIAFEAVRDGKLKYDQL 93

Query: 104 IPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
           I  +++      + S+++L+     +  + +  LI +S ND +    E + G+E  F +L
Sbjct: 94  ITPTESVRTVKTDESRMFLQAGKPVSVRELLQGLIVQSGNDAALVLAEAVGGTETNFVML 153

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           M+ +A+++GM+NT + NA+GL D N  TTARD +IL   L KNFPQ YK++S ++F Y N
Sbjct: 154 MNREAERLGMKNTHFMNAAGLPDPNHYTTARDLSILTAALIKNFPQDYKFYSQKEFTYNN 213

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMPTSQ 274
               N N+LL     +DG KTG+T+++G+ +VTS              +++V++G  + Q
Sbjct: 214 IKQPNRNRLLWLDPTVDGGKTGHTKSAGYCLVTSANRPLPDVPGASRRLLSVIVGTKSDQ 273

Query: 275 ERDQKALELITSFLE-KKTLKHQQTHR 300
            R Q++L+++    +   TL+     +
Sbjct: 274 IRTQESLKVLNYGYQFFDTLRLYDAQQ 300


>gi|165925339|ref|ZP_02221171.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|166212479|ref|ZP_02238514.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167422579|ref|ZP_02314332.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|165922946|gb|EDR40097.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|166206410|gb|EDR50890.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166958593|gb|EDR55614.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
          Length = 380

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 81/256 (31%), Positives = 135/256 (52%), Gaps = 11/256 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   + I+ID N  ++      D  R PASLTKMMT Y+I + ++S K+ 
Sbjct: 14  MIPGVPQIDAE---AYILIDYNSGKVLAEMNADTRRNPASLTKMMTSYVIGQAIKSGKIG 70

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V K A        +  S ++LK        +    +  +S ND   A  ++++G
Sbjct: 71  AEDMVTVGKDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAG 130

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+N  K +G+QNT +K   GL  + Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 131 SQDSFVNLMNNYVKALGLQNTHFKTVHGLDAEGQFSSARDMALIGQALIRDVPDEYAIYK 190

Query: 214 IRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F + N   TN N LL     N+DGIKTG+T  +G+N+V S       +++VV+G  T
Sbjct: 191 EKEFTFNNIRQTNRNGLLWDTSLNVDGIKTGHTEAAGYNLVASATDGQMRLISVVLGGHT 250

Query: 273 SQERDQKALELITSFL 288
            + R+ ++ +L+T   
Sbjct: 251 FKGRETESKKLLTWGF 266


>gi|254227305|ref|ZP_04920737.1| beta-lactamase, putative [Vibrio sp. Ex25]
 gi|262396428|ref|YP_003288281.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25]
 gi|151939917|gb|EDN58743.1| beta-lactamase, putative [Vibrio sp. Ex25]
 gi|262340022|gb|ACY53816.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25]
          Length = 385

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 78/288 (27%), Positives = 143/288 (49%), Gaps = 13/288 (4%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEP-RYPASLT 81
            + L   I+   +I +   + +   P        +++D     +           PASLT
Sbjct: 2   KVSLARWIIVTCLISVPTFAVVTPNPPQLKAKGYVLMDFQSGAIIAEHNGRAGLAPASLT 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITR 138
           K+MT Y++ + +++ +L  +  + VS+ A +      SK+++K K   +    +  +I +
Sbjct: 62  KLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAKFPGSSKMFIKPKDEISVANLMRGVIIQ 121

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND   A  E ++GSE+ F  LM+  A+K+G+Q+T + N+ GL  +   T+  D A L 
Sbjct: 122 SGNDACVALAEHVAGSERGFVALMNGWAEKLGLQDTYFVNSHGLDSEGIQTSPTDMAKLM 181

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLR 257
             +  + P  Y  +S + F++ +    N NKLL     ++DG KTGYT N+G+++V+S +
Sbjct: 182 QSIINDVPAVYALYSEKVFKWNDITQYNRNKLLWDNSIDVDGGKTGYTSNAGYSLVSSAK 241

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFL----EKKTLKHQQTHRK 301
                +++VVMG P+ Q R  ++  L++        K+  K  Q   K
Sbjct: 242 EGKMRLISVVMGTPSKQARTSQSKNLLSYGFRFYDTKQVAKQGQVESK 289


>gi|90581616|ref|ZP_01237407.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14]
 gi|90437199|gb|EAS62399.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14]
          Length = 391

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 81/290 (27%), Positives = 145/290 (50%), Gaps = 11/290 (3%)

Query: 26  RNIQLMGKILFLSIIMISMA--SELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTK 82
           R++ +   +L  + +  S A   E         I++D N  ++     + E   PASLTK
Sbjct: 9   RSVAISATLLASATVAASPAVVPEAPQIAAKGYILVDYNSGKILAGHNEYEKLAPASLTK 68

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRS 139
           MMT Y+I + +++  +  +  + +SK A  +N    SK++L+             +I  S
Sbjct: 69  MMTSYVIGQEIKNGNISPDDTVVISKNAWAKNFPGSSKMFLEVGKSVKVSDLNRGIIVDS 128

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND   A  E ++GS++ F  LM+  AK +GM++T + N  GL   +  TT  D +IL  
Sbjct: 129 GNDACVAMAEHVAGSQESFVDLMNGWAKNLGMKSTHFANVHGLDRPDLYTTPYDLSILAR 188

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY 258
            L ++ P  +K ++ + F Y      N N LL  K  ++DG+KTG+T N+G+++V++   
Sbjct: 189 SLIRDLPNEFKIYAEKSFTYNGITQYNRNGLLWDKSMHVDGLKTGHTDNAGYSLVSTATE 248

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLE-KKTL---KHQQTHRKDNL 304
            +  +++VVMG  +   R  ++ +L+       +TL   K  QT   + +
Sbjct: 249 GNMRLISVVMGTASKNARLAESKKLLNFGFRFYETLSPNKKDQTIETEKV 298


>gi|194367218|ref|YP_002029828.1| Serine-type D-Ala-D-Ala carboxypeptidase [Stenotrophomonas
           maltophilia R551-3]
 gi|194350022|gb|ACF53145.1| Serine-type D-Ala-D-Ala carboxypeptidase [Stenotrophomonas
           maltophilia R551-3]
          Length = 406

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 131/240 (54%), Gaps = 6/240 (2%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           + +++D    Q+   +  +E   PAS+TK+MT Y+I   +++ K+  + Q+ +S+ A  +
Sbjct: 56  AWVLMDYATGQVLAGENINEQLAPASITKVMTSYVIAAEVKNGKVRPDDQVMMSERAWRE 115

Query: 114 NP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                  S            E     +  +S ND + A  E ++GSE+ FA LM++ A K
Sbjct: 116 GGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAK 175

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           IGM+N+ + NA GL      ++A D A+LG  + +++P+ Y Y  I++F+  N    N N
Sbjct: 176 IGMKNSHFVNAHGLTAPGHHSSAYDLALLGRAMVRDYPETYAYNKIKEFQVGNIKQPNRN 235

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            LL +  ++DGIKTG+T  +G+ +++S +  D  +VAVV+G  + ++R   +L L+    
Sbjct: 236 LLLWRDGSVDGIKTGHTSEAGYCLMSSAQRGDQRLVAVVLGGQSEKQRADDSLALLNWGF 295


>gi|332993383|gb|AEF03438.1| D-alanyl-D-alanine carboxypeptidase [Alteromonas sp. SN2]
          Length = 394

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 80/274 (29%), Positives = 149/274 (54%), Gaps = 9/274 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASEL-HAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPA 78
            + +      +LF ++++ + A+ +    P  ++   ++ D     +   K  D    PA
Sbjct: 8   AKPSFLSFAFMLFSALVLSANAAVVTPPAPSVAAEGFLLTDFETGHVIASKNADMQLAPA 67

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILAL 135
           SLTK+MT+Y+I + LQ+  + L+ ++ +S+ A  +   + SK++++  T  +    +  +
Sbjct: 68  SLTKIMTIYVIGKELQAGNISLSDEVTISENAWAKKFPDSSKMFIEVGTQVSVSDLLRGI 127

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + +S ND   A  E ++GS+  FA +M+  A+ IGM ++ + NA GLHD +  TT RD A
Sbjct: 128 VVQSGNDACVAMAEHVAGSQAAFASMMNAHAQAIGMTSSNFVNAHGLHDPDHYTTPRDMA 187

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVT 254
           +L   L    P+ YK +S ++F +      N N LL  K  N+DGIKTG+T ++G++++T
Sbjct: 188 VLSRALIAETPEMYKIYSEKEFTFNGIKQYNRNSLLWDKSLNVDGIKTGHTSDAGYSLIT 247

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           S    D  +++VVMG  + + R  +  +L+    
Sbjct: 248 SASQGDMRLISVVMGTDSERARKVENKKLLKYGF 281


>gi|330505013|ref|YP_004381882.1| serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas mendocina
           NK-01]
 gi|328919299|gb|AEB60130.1| serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas mendocina
           NK-01]
          Length = 391

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 146/291 (50%), Gaps = 14/291 (4%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASE--LHAKPKYSS---IVIDVNKNQMTGFKQ-DEPR 75
           + I   +Q    +L L    ++MA++  + A P+ ++   +++D     +      D+  
Sbjct: 1   MNITSFVQRASLVLTLLAAPLAMANQQVVPAAPQLAAKSYVLMDAASGNVLVENNADQRL 60

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-----TQNPSKLYLKEKTYFTTEQ 130
            PASLTK+MT YI    +++ K+     + +S+ A          S ++L   +  T + 
Sbjct: 61  PPASLTKLMTAYIATLEIRNGKIGEQDLVTISEHAWRTGGAASGGSTMFLPLNSQATVDD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  +I +S ND S A  E+I+GSE  FA +M+  A+++GM+N+ + NA+GL      ++
Sbjct: 121 LLHGIIIQSGNDASIAIAEYIAGSEDAFADMMNATAERLGMKNSHFMNATGLPHPEHYSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           A D AIL   +     ++Y  +S ++F + N    N N LL +   +DG+KTG+T  +G+
Sbjct: 181 AHDMAILARAIINEDAEHYAIYSQKEFLWNNIKQPNRNLLLWRDRTVDGLKTGHTSEAGY 240

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQT 298
            +V S       ++  V G  + Q R  +  +L+T    F E +T   + T
Sbjct: 241 CLVASAVRDGARMITSVFGTDSEQARAAETQKLLTYGFRFFESRTFYQKGT 291


>gi|153820129|ref|ZP_01972796.1| penicillin-binding protein 6 [Vibrio cholerae NCTC 8457]
 gi|255745929|ref|ZP_05419876.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholera CIRS 101]
 gi|262163513|ref|ZP_06031259.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae INDRE 91/1]
 gi|262168229|ref|ZP_06035927.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC27]
 gi|126509329|gb|EAZ71923.1| penicillin-binding protein 6 [Vibrio cholerae NCTC 8457]
 gi|255735683|gb|EET91081.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholera CIRS 101]
 gi|262023472|gb|EEY42175.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC27]
 gi|262028080|gb|EEY46739.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae INDRE 91/1]
          Length = 378

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 81/312 (25%), Positives = 150/312 (48%), Gaps = 8/312 (2%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTL 86
           +  M  +  L    +++  E         ++ID +  ++           PASLTK+MT 
Sbjct: 1   MACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPASLTKLMTS 60

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSANDV 143
           Y+  + ++   +H + Q+ +S  A  +   + SK++++  TY         LI +S ND 
Sbjct: 61  YVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLIVQSGNDA 120

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           S A  E ++GSE  F  LM++ A+++GM N+ + N  GL +    +T  D A+LG  + +
Sbjct: 121 SVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIALLGRAIIR 180

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           + P+ Y  +S   F Y      N N LL  +  N+DG+KTGYT  +G+++ +S    +  
Sbjct: 181 DLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASSATSGEMR 240

Query: 263 IVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
           +++VVMG  + + R+ ++ +L++    F E  T   + T  ++       K  + +    
Sbjct: 241 LISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDTVIQNQRLWYGDKNEVALGSAD 300

Query: 320 RTYSQFKKIDAK 331
             Y    + D K
Sbjct: 301 TVYLTLPRSDVK 312


>gi|13470857|ref|NP_102426.1| penicillin-binding protein [Mesorhizobium loti MAFF303099]
 gi|14021600|dbj|BAB48212.1| penicillin-binding protein [Mesorhizobium loti MAFF303099]
          Length = 485

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 117/303 (38%), Positives = 178/303 (58%), Gaps = 5/303 (1%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLY 87
            +M   L ++ +   +AS L A+P  ++IV+D    ++         RYPASLTKMMTLY
Sbjct: 18  AMMVFALAMTFVCADVASSLAARP--AAIVVDAKTGKVLYSADANGRRYPASLTKMMTLY 75

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + FE +   K+  NT +  S  A+ + P+KL +K     + E  IL+++T+SAND +TA 
Sbjct: 76  LTFEAMAKGKISRNTPVVFSAKASAEAPTKLGVKPGGSVSVETAILSIVTKSANDSATAL 135

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
           GE + G E  FA +M+ KA+ +GM  T+++NA+GL D  Q TTARD A LGI LR++FPQ
Sbjct: 136 GEMLGGDETTFARMMTAKARALGMNGTVFRNANGLPDPGQFTTARDMATLGIALREHFPQ 195

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           YY YFS R F Y  + I  HN+LL ++  +DGIKTGYTR SGFN+V+S+   +  +VAVV
Sbjct: 196 YYGYFSQRSFLYGRQRINGHNRLLGRIKGVDGIKTGYTRASGFNLVSSVSDGNRRLVAVV 255

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKHQQ--THRKDNLSSTSLKKSLMIKKLKRTYSQF 325
           MG  +   RD +   LI +++ + + +       + D+ +       +++ K        
Sbjct: 256 MGGTSGGSRDNQMASLINTYMPRASTRGGGDLVAKADSSNPVKALAKVLLPKHDAPTPDD 315

Query: 326 KKI 328
           K +
Sbjct: 316 KPV 318


>gi|254719233|ref|ZP_05181044.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
 gi|265984229|ref|ZP_06096964.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
 gi|306837982|ref|ZP_07470840.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. NF 2653]
 gi|264662821|gb|EEZ33082.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
 gi|306406906|gb|EFM63127.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. NF 2653]
          Length = 472

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 116/312 (37%), Positives = 182/312 (58%), Gaps = 8/312 (2%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYI 88
           L+  +   S +     +      +Y++IVID N  +       D  RYPASLTKMMTLY+
Sbjct: 21  LLTAVTGYSTVSSIAPAMAKGDNRYAAIVIDANTGKTLFSANPDAQRYPASLTKMMTLYM 80

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           +FE + + +++ NT+IPVS  AA++ P+K+  +       E   LA+IT+SANDV+ A G
Sbjct: 81  LFEAIHAGRINKNTRIPVSAYAASRPPTKMGFRPGQSIRAEDAALAMITKSANDVAAAVG 140

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E++ GSE++FA +M+ +A+++GM+NT ++NASGL +  Q ++ARD AILG+ LR++FP+ 
Sbjct: 141 EYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPRE 200

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           + YFS   F +R + I  HN+LL ++  +DGIKTGYT  SG+N+V+S+      +VAVVM
Sbjct: 201 FAYFSRSSFEFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVM 260

Query: 269 GMPTSQERDQKALELITSFL-------EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRT 321
           G  T   RD    +LI  +L           L   ++     ++S  L K+         
Sbjct: 261 GGNTGASRDAHMAQLIRKYLPMAARGRNNDALIAARSEAPQVVASIDLPKAKRAPVPVAR 320

Query: 322 YSQFKKIDAKAH 333
            +    I+A+  
Sbjct: 321 IAVEDIINAEIG 332


>gi|83746894|ref|ZP_00943941.1| D-alanyl-D-alanine carboxypeptidase [Ralstonia solanacearum UW551]
 gi|207742170|ref|YP_002258562.1| penicillin-binding protein (d-alanyl-d-alanine carboxypeptidase)
           [Ralstonia solanacearum IPO1609]
 gi|83726479|gb|EAP73610.1| D-alanyl-D-alanine carboxypeptidase [Ralstonia solanacearum UW551]
 gi|206593558|emb|CAQ60485.1| penicillin-binding protein (d-alanyl-d-alanine carboxypeptidase)
           [Ralstonia solanacearum IPO1609]
          Length = 398

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 88/267 (32%), Positives = 150/267 (56%), Gaps = 14/267 (5%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A ++ A+   + ++ DV   Q+ G    DE   PASLTK+MT YI FE ++  KL  +  
Sbjct: 37  APQVTAR---AWMLTDVTSGQVLGGGNMDERVEPASLTKLMTAYIAFEAVRDGKLKYDQL 93

Query: 104 IPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
           I  +++      + S+++L+     +  + +  LI +S ND +    E + G+E  F +L
Sbjct: 94  ITPTESVRTVKTDESRMFLQAGKPVSVRELLQGLIVQSGNDAALVLAEAVGGTETNFVML 153

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           M+ +A+++GM+NT + NA+GL D N  TTARD +IL   L KNFPQ YK++S ++F Y N
Sbjct: 154 MNREAERLGMKNTHFMNAAGLPDPNHYTTARDLSILTAALIKNFPQDYKFYSQKEFTYNN 213

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMPTSQ 274
               N N+LL     +DG KTG+T+++G+ +VTS              +++V++G  + Q
Sbjct: 214 IKQPNRNRLLWLDPTVDGGKTGHTKSAGYCLVTSANRPLPDVPGASRRLLSVIVGTKSDQ 273

Query: 275 ERDQKALELITSFLE-KKTLKHQQTHR 300
            R Q++L+++    +   TL+     +
Sbjct: 274 IRTQESLKVLNYGYQFFDTLRLYDAQQ 300


>gi|75676866|ref|YP_319287.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
           winogradskyi Nb-255]
 gi|74421736|gb|ABA05935.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
           winogradskyi Nb-255]
          Length = 455

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 86/311 (27%), Positives = 155/311 (49%), Gaps = 9/311 (2%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEY 92
           I+  ++ ++++A         + ++I+ +  ++   +    P YPAS+TK+MT Y+    
Sbjct: 16  IVLAAVALVTLAPSRTVHATEAHLLIEADTGKVLEAENATFPWYPASVTKLMTAYVTLTA 75

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           ++ K+L L+T + VS TAA Q+PSK+  +  T  T +  +  ++ +SAND++    E + 
Sbjct: 76  VKQKRLTLDTLLTVSPTAAAQSPSKMGFRPGTQVTVDNALKMMMVKSANDMAVVLAEGVG 135

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           GS   F+  M+  A+++GM  + Y N +GL    QI++ARD AIL      + P+Y  + 
Sbjct: 136 GSIDGFSAEMNAAAQRLGMTQSSYVNPNGLPADGQISSARDMAILARAFIHDLPEYEYFV 195

Query: 213 SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            I   RY  R+  N NKL+ +    DG KTG+   SG+N+V S       ++AVV+G  +
Sbjct: 196 HIPSIRYGRRVTHNFNKLIGRFPGADGFKTGFICASGYNLVASATQNGKRLIAVVLGASS 255

Query: 273 SQERDQKALELITSFLEKKTLKH-----QQTHRKDNLSSTS--LKKSLMIKKLKRTYSQF 325
              R  +A +++       +L           R   +++T   L+  +   K +   S  
Sbjct: 256 GTMRAVRAAQMLERGFANNSLSWLRPALGTVDRLAPIAATPPNLRDEMCGPKRRHPASDE 315

Query: 326 KK-IDAKAHST 335
              + A   +T
Sbjct: 316 DNDVVANTSAT 326


>gi|144898029|emb|CAM74893.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 424

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 114/274 (41%), Positives = 168/274 (61%), Gaps = 3/274 (1%)

Query: 20  GSIYIQRNIQ-LMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQDEPR-Y 76
           G + + R+I  L+G+ L L  I++      HA+  +Y+SIV+D +   +      + R Y
Sbjct: 12  GPLPLLRHITGLVGRALMLMTILVLAPHTAHARDDRYASIVVDADNGNVLYAVNPDRRSY 71

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MTLY++F+ L+  KL LN+++PVS  A  Q+PSKL LK       E  +L+L+
Sbjct: 72  PASLTKVMTLYLLFDALEQGKLTLNSRMPVSAHATRQSPSKLNLKVGDRIDVEDAVLSLV 131

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
           T+SANDV+    E I GSE  FA +M+ KA+++GM +T Y+NASGL D  QI+T RDQA 
Sbjct: 132 TKSANDVAVVVAEAIGGSEDDFAEMMTRKARQLGMSSTTYRNASGLPDMGQISTPRDQAT 191

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   L K+  +YY YFS R+F ++ + I+ HN+L+ +    DGIKTGY   SGFN++ S 
Sbjct: 192 LARALVKHHGRYYHYFSTRQFNWQGQPISTHNRLMLRYQGADGIKTGYINASGFNLIASA 251

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +     IV VV G  T+  RD    +++     +
Sbjct: 252 KRDGKRIVGVVFGGNTAGWRDNNMAQILDKGFAR 285


>gi|330445206|ref|ZP_08308858.1| D-alanyl-D-alanine carboxypeptidase family protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328489397|dbj|GAA03355.1| D-alanyl-D-alanine carboxypeptidase family protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 391

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 86/290 (29%), Positives = 144/290 (49%), Gaps = 11/290 (3%)

Query: 26  RNIQLMGKILFLSIIMISMA--SELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTK 82
           R++ +   +L  + +  S A   E         I++D N  ++     + E   PASLTK
Sbjct: 9   RSVAISATLLASATVAASPAVVPEAPQIAAKGYILVDYNSGKILAGHNEYEKLAPASLTK 68

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRS 139
           MMT Y+I + +++  +  +  + VSK A  +N    SK++L+             +I  S
Sbjct: 69  MMTSYVIGQEIKNGNISPDDTVVVSKNAWAKNFPGSSKMFLEVGKTVKVSDLNRGIIVDS 128

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND   A  E I+GS++ F  LM+  AK +GM++T + N  GL   +  TT  D +IL  
Sbjct: 129 GNDACVAMAEHIAGSQESFVDLMNGWAKNLGMKSTHFANVHGLDRSDLYTTPYDLSILAR 188

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY 258
            L  + P  +K +S + F Y      N N LL  K  ++DG+KTG+T N+G+++V++   
Sbjct: 189 HLISDLPNEFKIYSEKSFTYNGITQYNRNGLLWDKSMHVDGLKTGHTDNAGYSLVSTATE 248

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLE-KKTL---KHQQTHRKDNL 304
            +  +VAVVMG  +   R  ++ +L+       +TL   K  QT   + +
Sbjct: 249 GNMRLVAVVMGTASKNARLAESKKLLNFGFRFYETLSPNKKDQTIETEKV 298


>gi|319778852|ref|YP_004129765.1| D-alanyl-D-alanine carboxypeptidase [Taylorella equigenitalis MCE9]
 gi|317108876|gb|ADU91622.1| D-alanyl-D-alanine carboxypeptidase [Taylorella equigenitalis MCE9]
          Length = 430

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 76/237 (32%), Positives = 133/237 (56%), Gaps = 1/237 (0%)

Query: 55  SSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S I+ID+   Q+   +  D    PASLTK+MT  ++FE ++ K++ L+ ++ VS+ A   
Sbjct: 88  SWIIIDMESGQIIAQYNPDLKVAPASLTKLMTSSLVFEAIKDKRISLDQEVIVSERAWKT 147

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S++++      T  + +  +I +S ND S    E +SG+   F   M++  +   M N
Sbjct: 148 GGSRMFINVNKKVTIGELLQGMIVQSGNDASIQLAESVSGTIDAFVKEMNDSLQAFHMLN 207

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           + + + +GL   N  TTARD ++L   +  +FPQ+Y YFS  +F Y     TN N LL K
Sbjct: 208 SHFADPTGLPSPNTYTTARDLSVLAQHIIVDFPQFYHYFSQPEFTYNKIRQTNTNGLLGK 267

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +  +DG+KTG+T  +G+ +VTS++  +  I+ ++MG  + + R+Q + +LI    + 
Sbjct: 268 IEGLDGLKTGHTDEAGYCLVTSVKRNNRRILTILMGADSIKHREQLSKQLIDWTFQN 324


>gi|86357827|ref|YP_469719.1| serine-type D-Ala-D-Ala carboxypeptidase protein [Rhizobium etli
           CFN 42]
 gi|86281929|gb|ABC90992.1| probable serine-type D-Ala-D-Ala carboxypeptidase protein
           [Rhizobium etli CFN 42]
          Length = 525

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 117/285 (41%), Positives = 174/285 (61%), Gaps = 1/285 (0%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKM 83
            + + ++   + + ++    A    A  KY+ IV+D     +   +  +   YPASLTKM
Sbjct: 25  AKLLAILSMTVTVVLVDSVNAEAEAANSKYAGIVVDAKTGNVLYSENADRLQYPASLTKM 84

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MTLY+ FE L+  ++ L+T +P S  AA Q P+KL ++     T EQGIL L+T SAND 
Sbjct: 85  MTLYMTFEALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDA 144

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           +TA GE + GSE +FA +M+ KA  +GM  T Y+NA+GL +  Q+TTARDQA LGI LR+
Sbjct: 145 ATALGEMLGGSEDRFAQMMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQ 204

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           +FPQYY YFS R F++  R I +HN+L+  +  +DGIKTGYTR +GFN+V+S++     I
Sbjct: 205 HFPQYYGYFSTRAFKFGTRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSI 264

Query: 264 VAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
           V+VV+G  +   RD +   LI ++L K + +   +      +   
Sbjct: 265 VSVVLGGASGPARDAQMRNLIATYLPKASSRGGSSQLVAQTAPAP 309


>gi|296534465|ref|ZP_06896895.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis
           ATCC 49957]
 gi|296265208|gb|EFH11403.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis
           ATCC 49957]
          Length = 305

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 107/241 (44%), Positives = 158/241 (65%), Gaps = 1/241 (0%)

Query: 52  PKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +YS+IV+D    + +        RYPASLTKMMTLY++FE +Q  ++ L+T+IPVS+ A
Sbjct: 43  ARYSAIVMDAATGEELVSVNAGASRYPASLTKMMTLYMMFEAMQQGRMTLSTRIPVSRHA 102

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A Q PSKL LK  +  +    ILAL+T+SANDV+ A  E + GSE +F  LM+ +A+ +G
Sbjct: 103 AGQEPSKLGLKPGSSISARDAILALVTKSANDVAAAVAEHLGGSEVQFGRLMTRRAQSLG 162

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M++T ++NASGL D NQ+TTARD A+L   L ++FPQ+Y YF+ R F +R + I +HN++
Sbjct: 163 MRDTSFRNASGLPDANQVTTARDMALLSRALIRHFPQHYAYFNARSFSWRGQTIRSHNRV 222

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L +    DG+KTG+ R SGFN+ +S       ++ VV G  TS+ERD   + L     ++
Sbjct: 223 LAEYDGADGLKTGFIRASGFNLASSAERGGVRLIVVVFGGATSRERDDHVMALFDRGFQE 282

Query: 291 K 291
           +
Sbjct: 283 R 283


>gi|255744731|ref|ZP_05418682.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholera CIRS 101]
 gi|262161135|ref|ZP_06030246.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae INDRE 91/1]
 gi|255737762|gb|EET93156.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholera CIRS 101]
 gi|262028885|gb|EEY47538.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae INDRE 91/1]
          Length = 347

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 80/235 (34%), Positives = 128/235 (54%), Gaps = 5/235 (2%)

Query: 59  IDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN--- 114
           +D +  ++   K+ D    PASLTKMMT Y+I + ++   + LN  + +SK A  +N   
Sbjct: 1   MDYHSGKVLAEKEMDTKLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFPD 60

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            SK++++  T          +I +S ND   A  E ++G+E  F  LM+  A  +GM+N+
Sbjct: 61  SSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGMKNS 120

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-K 233
            + N+ GL D N  +T  D A+LG  L ++ P+ Y  +S +KF Y      N N LL  K
Sbjct: 121 HFTNSHGLDDPNLYSTPYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLLWDK 180

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
             N+DGIKTG+T  +G+N+V+S    +  +VAVVMG      R  ++ +L++   
Sbjct: 181 SMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGF 235


>gi|119713206|gb|ABL97274.1| D-alanyl-D-alanine carboxypeptidase [uncultured marine bacterium
           EB0_50A10]
          Length = 384

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 87/297 (29%), Positives = 152/297 (51%), Gaps = 9/297 (3%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTL 86
           I L+   +  +   +  A EL  K   S I+I+ N N +      D    PAS+TK+MT 
Sbjct: 6   IPLLLTNILYAQSFVPDAPELDLK---SYILIEPNTNTVIAEFNSDSEIEPASMTKIMTS 62

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y++ + + +  + L+ Q+ +S+ A     SK++++     +    +  +I +S ND S A
Sbjct: 63  YVVADQIANDLISLDDQVLISEKAWRMEGSKMFIEAGKKVSVSDLLKGIIIQSGNDASVA 122

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E+  G+E+ F  LM+  A  + M NTI+KN++GL D+N  ++A+D A L     K FP
Sbjct: 123 IAEYAGGTERGFVDLMNAYAGALSMNNTIFKNSTGLPDENHFSSAKDLATLTSDFIKKFP 182

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
             Y  ++ ++F + N    N NKLL +  + DG+KTG+T  +G+ +V S +  +  ++ V
Sbjct: 183 DIYSLYNEKQFTFNNIKQLNRNKLLWRDDSSDGVKTGHTEAAGYCLVGSAKRGNMRLITV 242

Query: 267 VMGMPTSQERDQKALELITSFL----EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
           V G  +   R   +  L+         +K L   Q ++  N+    L+KSL +  L+
Sbjct: 243 VAGSDSDNNRFLASQRLLEYGFRFFATQKVLNANQEYKNINIWG-GLEKSLSLGVLE 298


>gi|319427343|gb|ADV55417.1| Beta-lactamase [Shewanella putrefaciens 200]
          Length = 391

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 75/275 (27%), Positives = 142/275 (51%), Gaps = 9/275 (3%)

Query: 23  YIQRNIQLMGKILFLSIIMISM----ASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYP 77
           +++  I+ +  I  +S+ + +       +       + +++D    Q+       E   P
Sbjct: 4   FVKSPIKTLLLISSVSLPVYAAQPIVTPDAPTVAAKAYVLMDYYSGQIIAESNAYESLNP 63

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           ASLTKMMT Y+I + +++  +     + +SK A ++N    SK++++             
Sbjct: 64  ASLTKMMTSYVIGQEIKAGNVSPEDDVTISKNAWSKNFSDSSKMFIEVGKTVKVADLNRG 123

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +I +S ND   A  E I+G+E  F  +M++ +K++GM+++ ++N+ GL   N  TTA D 
Sbjct: 124 IIIQSGNDACVAMAEHIAGTEGAFVDMMNSWSKQLGMRDSYFENSHGLDSDNHKTTAYDM 183

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIV 253
           A+LG  L ++ P+ Y+ +S + + +      N N LL     N+DGIKTG+T  +G+N+V
Sbjct: 184 ALLGAALIRDVPEEYRVYSEKFYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGYNLV 243

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            S       +++VVMG  +   R  ++ +L+T   
Sbjct: 244 ASATKDGMRLISVVMGTQSEAARKAESKKLLTYGF 278


>gi|154248459|ref|YP_001419417.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter
           autotrophicus Py2]
 gi|154162544|gb|ABS69760.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter
           autotrophicus Py2]
          Length = 663

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 108/236 (45%), Positives = 159/236 (67%), Gaps = 1/236 (0%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I++D N  ++      D  R+PAS+TK+MTLY++FE L++  L L++ + VS  AA+Q
Sbjct: 75  SAIIVDANTGKVLYEDNPDALRHPASVTKIMTLYLLFEQLEAGNLKLDSDLQVSAKAASQ 134

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
            PSKL +K  +    E  I AL+TRSANDV+    E + GSE +FA +M+ KA+ +GM  
Sbjct: 135 QPSKLGVKPGSAIEVEDAIKALVTRSANDVAVVIAENLGGSESEFAEMMTRKARALGMSR 194

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           T+++NASGL + NQ+TTARD +ILG  ++  FP+ YKYF+ R F YR + I NHN+LL +
Sbjct: 195 TVFRNASGLPNPNQVTTARDLSILGRAIQDRFPKQYKYFATRTFYYRGQAIGNHNRLLGR 254

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           +  +DGIKTGYT+ SGFN+VTS++     +V VV+G  ++  RD +   LI+  L 
Sbjct: 255 VEGVDGIKTGYTQASGFNLVTSVKRDGRFLVGVVLGGSSAGARDARMTNLISQNLN 310


>gi|189024322|ref|YP_001935090.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus
           S19]
 gi|261325261|ref|ZP_05964458.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
 gi|261752478|ref|ZP_05996187.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
           513]
 gi|261758361|ref|ZP_06002070.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99]
 gi|265998302|ref|ZP_06110859.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1]
 gi|189019894|gb|ACD72616.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus
           S19]
 gi|261301241|gb|EEY04738.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
 gi|261738345|gb|EEY26341.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99]
 gi|261742231|gb|EEY30157.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
           513]
 gi|262552770|gb|EEZ08760.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1]
          Length = 461

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 114/312 (36%), Positives = 182/312 (58%), Gaps = 8/312 (2%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYI 88
           L+  +   S +     +      +Y++IV+D N  +       D  RYPASLTKMMTLY+
Sbjct: 10  LLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLYM 69

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           +FE + + +++ +T+IPVS  AA++ P+K+  +       E   LA+IT+SANDV+ A G
Sbjct: 70  LFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVG 129

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E++ GSE++FA +M+ +A+++GM+NT ++NASGL +  Q ++ARD AILG+ LR++FP+ 
Sbjct: 130 EYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPRE 189

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           + YFS   F +R + I  HN+LL ++  +DGIKTGYT  SG+N+V+S+      +VAVVM
Sbjct: 190 FAYFSRSSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVM 249

Query: 269 GMPTSQERDQKALELITSFL-------EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRT 321
           G  T   RD    +LI  +L           L   ++     ++S  L K+         
Sbjct: 250 GGNTGASRDAHMAQLIRKYLPMAARGRNNDALIAARSEAPQVVASIDLPKAKRAPVPVAR 309

Query: 322 YSQFKKIDAKAH 333
            +    I+A+  
Sbjct: 310 IAVEDIINAEIG 321


>gi|238028745|ref|YP_002912976.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           glumae BGR1]
 gi|237877939|gb|ACR30272.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           glumae BGR1]
          Length = 433

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 77/257 (29%), Positives = 136/257 (52%), Gaps = 10/257 (3%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  A         S +++D + NQ+      DE   PASLTK+MT Y++FE L SKK+ +
Sbjct: 66  LPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALASKKISM 125

Query: 101 NTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
              +  S+       + S+++++     +    +  +I +S ND + A  E + GSE +F
Sbjct: 126 EQIVTPSEAVRRVGTDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 185

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+ +A+K+GM+ T + + +G+ D    TTA D A+L   L ++FP YY  FS++ F 
Sbjct: 186 VNMMNAEAQKLGMKGTHFADVNGMPDPQHYTTAGDLAVLSARLIRDFPDYYNIFSVKDFT 245

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK-------DDPIVAVVMGMP 271
           Y +    N N+LL     +DG+KTG+T+ +G+ ++ S +            +V V+MG P
Sbjct: 246 YNHIRQPNRNRLLWIDPTVDGLKTGHTQAAGYCLIASAKRPLPGSADVSRRLVTVMMGEP 305

Query: 272 TSQERDQKALELITSFL 288
              +R Q +L+++    
Sbjct: 306 RESDRVQDSLKMLNYGY 322


>gi|77359968|ref|YP_339543.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76874879|emb|CAI86100.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 387

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 80/266 (30%), Positives = 137/266 (51%), Gaps = 8/266 (3%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGF-KQDEPRYPASLTKMMTL 86
           +  ++  + +  + A  + A P+ ++    ++D    ++    + D    PASLTKMMT 
Sbjct: 12  VCGLVCSAAVFSATAQIIPAPPQVNAKGYFLVDFTTGKVIAQGEADTKLAPASLTKMMTS 71

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDV 143
           Y+I   +++  +     + VS+ A  +N    SK++++     + +     +I +S ND 
Sbjct: 72  YVIGTEVKAGNIAPTDMVTVSEKAWAKNFPESSKMFIEVGKQISVDDLNHGIIIQSGNDA 131

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
             A  E I+GSE  FA LM+  A K+GM NT + N+ GL      TT RD A LG  L +
Sbjct: 132 CVAMAEHIAGSESAFADLMNAHAAKLGMSNTHFINSHGLDTDAHYTTPRDMATLGGALIR 191

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           + P  Y  +  + F Y      N N LL     ++DGIKTG+T ++G+++VTS    D  
Sbjct: 192 DVPDEYALYKKKSFTYNGIKQYNRNSLLWDESLDVDGIKTGHTSDAGYSLVTSATKNDMR 251

Query: 263 IVAVVMGMPTSQERDQKALELITSFL 288
           ++AVVMG  + + R +++ +L+    
Sbjct: 252 LIAVVMGTSSERARKEESKKLLNYGF 277


>gi|325920074|ref|ZP_08182046.1| penicillin-binding protein 6 [Xanthomonas gardneri ATCC 19865]
 gi|325549444|gb|EGD20326.1| penicillin-binding protein 6 [Xanthomonas gardneri ATCC 19865]
          Length = 401

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 76/250 (30%), Positives = 133/250 (53%), Gaps = 9/250 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S I++D    Q+   +   +   PAS+TK+MT Y++   +++ K+  + Q+ +S+ A  +
Sbjct: 51  SWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAWRE 110

Query: 114 N-----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                  S            E     +  +S ND + A  E ++GSE+ FA LM++ A K
Sbjct: 111 GGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAK 170

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           IGM+++ + NA GL  +   +TA D A+LG  + +++P+ Y Y  I++F+       N N
Sbjct: 171 IGMKDSYFVNAHGLSAEGHHSTAYDLAMLGRAMVRDYPETYAYNKIKEFQVGTIKQNNRN 230

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS-- 286
            LL +   +DGIKTG+T  +G+ +++S +  D  +VAVVMG  + ++R   +L L+    
Sbjct: 231 LLLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLVAVVMGDSSERQRADDSLALLNWGF 290

Query: 287 -FLEKKTLKH 295
            F E  +L  
Sbjct: 291 RFFETHSLYA 300


>gi|262173532|ref|ZP_06041209.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus MB-451]
 gi|261890890|gb|EEY36877.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus MB-451]
          Length = 378

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 80/312 (25%), Positives = 151/312 (48%), Gaps = 8/312 (2%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTL 86
           +  M  +  L    +++  E         ++ID +  ++   +       PASLTK+MT 
Sbjct: 1   MACMAFVPTLGFSALTITPEPPQLAANGYVLIDYHTGKILVERNAHQKLNPASLTKLMTA 60

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSANDV 143
           Y+  + ++   +H   Q+ +S  A  +   + SK++++  +Y         LI +S ND 
Sbjct: 61  YVAGQEMKRGNIHAEDQVRISNNAWAKKFPDSSKMFIEVGSYVNLMDLYRGLIVQSGNDA 120

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           S A  E ++GSE  F  LM++ A+++GM N+ + N  GL + N  +T  D A+LG  + +
Sbjct: 121 SVAIAEHVAGSESAFVSLMNSWAQQLGMNNSSFANPHGLDNSNLYSTPYDIALLGQAIIR 180

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           + P+ Y  +S   F Y      N N LL  +  N+DG+KTGYT  +G+++ +S    +  
Sbjct: 181 DLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASSATSGEMR 240

Query: 263 IVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
           +++VVMG  + + R+ ++ +L++    F E  +   ++T  +        K  + +    
Sbjct: 241 LISVVMGSKSVKIREAESKQLLSYGFRFFETVSPHQKETVIQSQRIWYGDKNEVALGSAD 300

Query: 320 RTYSQFKKIDAK 331
             Y    + D K
Sbjct: 301 TVYLTLPRNDVK 312


>gi|209694545|ref|YP_002262473.1| penicillin-binding protein 5 precursor (D-alanyl-D-alanin
           carboxypeptidase fraction A) [Aliivibrio salmonicida
           LFI1238]
 gi|208008496|emb|CAQ78667.1| penicillin-binding protein 5 precursor (D-alanyl-D-alanin
           carboxypeptidase fraction A) [Aliivibrio salmonicida
           LFI1238]
          Length = 391

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 76/267 (28%), Positives = 139/267 (52%), Gaps = 8/267 (2%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRY-PASLTKMMT 85
           ++   +  S + ++  + +   P+ ++   +++D +  ++   K    R  PASLTKMMT
Sbjct: 12  ILSSFILGSTVAVAAPAVIPNAPQIAAKGYVLMDYHSGKVLAEKDMNVRMNPASLTKMMT 71

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSAND 142
            Y+I + + S  + ++  + +SK A  +N    SK++++  +          +I +S ND
Sbjct: 72  SYVIGQEIASGNISMDDDVVISKNAWAKNFPGSSKMFIEVGSVVKVRDLNQGIIVQSGND 131

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
              A  E ++GSE  F  LM+  +K + +QNT + N  GL   +  +T  D A++G  L 
Sbjct: 132 ACVAMAEHVAGSEDAFVDLMNAWSKTLNLQNTHFANVHGLDRDDLYSTPYDMALIGQALI 191

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           ++ P+ Y+ +S + + Y      N N LL  K  N+DGIKTG+T  +G+N+V+S      
Sbjct: 192 RDVPEEYRVYSEKSYTYNGITQYNRNGLLWDKSMNVDGIKTGHTDGAGYNLVSSATEGKM 251

Query: 262 PIVAVVMGMPTSQERDQKALELITSFL 288
            +VAVVMG  +   R  ++ +L+    
Sbjct: 252 RLVAVVMGTKSGNARKAESKKLLNYGF 278


>gi|120597860|ref|YP_962434.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella sp. W3-18-1]
 gi|146293967|ref|YP_001184391.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella putrefaciens
           CN-32]
 gi|120557953|gb|ABM23880.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Shewanella sp. W3-18-1]
 gi|145565657|gb|ABP76592.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella putrefaciens
           CN-32]
          Length = 391

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 75/275 (27%), Positives = 142/275 (51%), Gaps = 9/275 (3%)

Query: 23  YIQRNIQLMGKILFLSIIMISM----ASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYP 77
           +++  I+ +  I  +S+ + +       +       + +++D    Q+       E   P
Sbjct: 4   FVKSPIKTLLLISSVSLPVYAAQPIVTPDAPTVAAKAYVLMDYYSGQIIAESNAYESLNP 63

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           ASLTKMMT Y+I + +++  +     + +SK A ++N    SK++++             
Sbjct: 64  ASLTKMMTSYVIGQEIKAGNVSPEDDVTISKNAWSKNFSDSSKMFIEVGKTVKVADLNRG 123

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +I +S ND   A  E I+G+E  F  +M++ +K++GM+++ ++N+ GL   N  TTA D 
Sbjct: 124 IIIQSGNDACVAMAEHIAGTEGAFVDMMNSWSKQLGMRDSYFENSHGLDSDNHKTTAYDM 183

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIV 253
           A+LG  L ++ P+ Y+ +S + + +      N N LL     N+DGIKTG+T  +G+N+V
Sbjct: 184 ALLGAALIRDVPEEYRVYSEKFYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGYNLV 243

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            S       +++VVMG  +   R  ++ +L+T   
Sbjct: 244 ASATKDGMRLISVVMGTQSEAARKAESKKLLTYGF 278


>gi|297183970|gb|ADI20090.1| d-alanyl-d-alanine carboxypeptidase [uncultured alpha
           proteobacterium EB080_L06A09]
          Length = 481

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 104/275 (37%), Positives = 153/275 (55%), Gaps = 10/275 (3%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
           R   L+  +LF  + +            Y+++V+D    ++   +  D   +PASLTKMM
Sbjct: 7   RGFILVVVLLFTGVSVYGAP--------YAALVMDARTGEVLHSRNADTRLHPASLTKMM 58

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TLY+ F+ ++S  L L+ ++ VS+ AA++ PSKL L+          I A   +SAND +
Sbjct: 59  TLYLAFKAVESGHLSLDEKVKVSRNAASEPPSKLGLRTGMRVKVRHLIRAAAVKSANDAA 118

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
           TA GE I+GSE KF  LM+ +AK +GM+ T +KNA GL  K  ++TARD +ILG  L  +
Sbjct: 119 TALGEAIAGSEVKFTTLMTAQAKALGMKRTTFKNAHGLTAKGHLSTARDMSILGRHLMYD 178

Query: 205 FPQYYKYFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           FP YY  FS R      R + N N +LL      DGIKTGYT  +GFN+V+S +  +  I
Sbjct: 179 FPDYYNLFSRRNTDAGLRTVPNTNRRLLANYKGADGIKTGYTNAAGFNLVSSAQRGNKRI 238

Query: 264 VAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
           +A V G  T + R+ +  EL+     +   K+  T
Sbjct: 239 IATVFGGRTWKSRNARVAELLDMGFNRTPKKYTST 273


>gi|323136415|ref|ZP_08071497.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocystis sp. ATCC
           49242]
 gi|322398489|gb|EFY01009.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocystis sp. ATCC
           49242]
          Length = 592

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 114/280 (40%), Positives = 173/280 (61%), Gaps = 2/280 (0%)

Query: 54  YSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +++IV+D N  +    +   E R+PAS+TK+MTLY++FE L+  KL L++ + +S  AA 
Sbjct: 89  FAAIVVDGNSGKTLYARNEHELRHPASVTKVMTLYLLFEQLEKGKLRLDSPLMISSHAAA 148

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           Q PSKL L+     + E  I A++T+SAND++ A  E I G E  FA +M+ KA  +GM+
Sbjct: 149 QAPSKLGLRPGETISVENAIKAVVTKSANDIACAIAENIGGDEHTFAQMMTRKAHALGMR 208

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           NT Y+NASGL D  QITTA D A+LG  ++  FP+YY+YFS   F Y   +  NHN LL 
Sbjct: 209 NTHYENASGLPDPGQITTAYDLAVLGRAIQDRFPRYYRYFSTHSFAYNGALHRNHNHLLG 268

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKK 291
           ++  +DGIKTGYTR SGFN++TS+R  +  IVAVVMG  T+  RD+    LI   +    
Sbjct: 269 QVEGMDGIKTGYTRASGFNLLTSVRRGNHHIVAVVMGGATAGGRDRIMAGLIEDNIGGGA 328

Query: 292 TLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
           +++      +D+ +    ++S + +  +R   +F + + +
Sbjct: 329 SIRTAAAITEDSAAEQLAEESPVDRVQERQPERFAEREVE 368


>gi|238794862|ref|ZP_04638462.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia intermedia ATCC
           29909]
 gi|238725805|gb|EEQ17359.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia intermedia ATCC
           29909]
          Length = 401

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 129/242 (53%), Gaps = 8/242 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           + +++D N  ++      D+   PASLTK+M+ Y+I + +++ K+H +  + V K A   
Sbjct: 42  AYVLMDYNSGKVLVEGNSDQRLDPASLTKIMSSYVIGQAIKAGKVHPDDLVTVGKDAWAT 101

Query: 113 -----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                +  S ++LK             ++ +S ND S A  ++++GS+  F  LM+N AK
Sbjct: 102 GNPALRGSSLMFLKPGDQVKLSDLNKGIVIQSGNDASIALADYVAGSQDSFVGLMNNYAK 161

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
            +G+ NT +    GL    Q +TARD A+LG  L ++ P+ Y     ++F +      N 
Sbjct: 162 ALGLSNTHFMTVHGLDAPGQYSTARDMAVLGQALIRDVPEEYALHKEKEFTFNKIRQINR 221

Query: 228 NKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           N+LL   + N+DG+KTG+T  +G N+V S       +++VV+G P+ + R  ++ +L++ 
Sbjct: 222 NRLLWNTNLNVDGMKTGFTSGAGHNLVASATEGPMRLISVVLGAPSDRVRFSESEKLLSW 281

Query: 287 FL 288
             
Sbjct: 282 GF 283


>gi|306841894|ref|ZP_07474574.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO2]
 gi|306288024|gb|EFM59426.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO2]
          Length = 472

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 116/314 (36%), Positives = 184/314 (58%), Gaps = 13/314 (4%)

Query: 33  KILFLSIIMISMASELHAK-----PKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTL 86
            +L  ++   S AS +         +Y++IV+D N  +       D  RYPASLTKMMTL
Sbjct: 19  SLLLTAVTGYSTASSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPASLTKMMTL 78

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y++FE + + +++ +T+IPVS  AA++ P+K+  +       E   LA+IT+SANDV+ A
Sbjct: 79  YMLFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAA 138

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
            GE++ GSE++FA +M+ +A+++GM+NT ++NASGL +  Q ++ARD AILG+ LR++FP
Sbjct: 139 VGEYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFP 198

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           + + YFS   F +R + I  HN+LL ++  +DGIKTGYT  SG+N+V+S+      +VAV
Sbjct: 199 REFAYFSRSSFEFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAV 258

Query: 267 VMGMPTSQERDQKALELITSFL-------EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
           VMG  T   RD    +LI  +L           L   ++     ++S  L K+       
Sbjct: 259 VMGGNTGASRDAHMAQLIRKYLPMAARGRNNDALIAARSEAPQVVASIDLPKAKRAPVPV 318

Query: 320 RTYSQFKKIDAKAH 333
              +    I+A+  
Sbjct: 319 ARIAVEDIINAEIG 332


>gi|149190858|ref|ZP_01869122.1| D-alanyl-D-alanine carboxypeptidase [Vibrio shilonii AK1]
 gi|148835318|gb|EDL52291.1| D-alanyl-D-alanine carboxypeptidase [Vibrio shilonii AK1]
          Length = 394

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 77/252 (30%), Positives = 137/252 (54%), Gaps = 8/252 (3%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
                 L+AK     +++D     +  G  QD    PASLTK+MT Y++ + +++ +   
Sbjct: 25  TPNPPTLNAK---GYVLMDYQSGAILVGGNQDAALAPASLTKLMTAYVVGKEIENGRTSW 81

Query: 101 NTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           ++++ VS+ A +    + SK+++K     T    +  LI +S ND + A  E ++G+E  
Sbjct: 82  DSKVAVSENAWSVKFPDSSKMFIKPGDNVTVADLLRGLIVQSGNDAAVALAEHVAGTESG 141

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F  LM+  A  +GM NT + NA GL  +   TT  D AIL   + ++ P+ Y+ +S ++F
Sbjct: 142 FVALMNQWAVNLGMNNTQFINAHGLDGQGIHTTPNDMAILMRKIIEDVPEVYEIYSEKRF 201

Query: 218 RYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
            + +    N N+LL     N+DG KTGYT ++G+++V+S       +++VVMG P++Q R
Sbjct: 202 VWADIKQYNRNRLLWDNSLNVDGGKTGYTSDAGYSLVSSATQGQMRLISVVMGTPSTQTR 261

Query: 277 DQKALELITSFL 288
            + + +L+    
Sbjct: 262 VEASRQLLNYGF 273


>gi|319407377|emb|CBI81028.1| Penicillin-binding protein [Bartonella sp. 1-1C]
          Length = 449

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 114/272 (41%), Positives = 169/272 (62%), Gaps = 1/272 (0%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASL 80
           ++  + + +   +L +S        +     KY++IVID N  +          RYPASL
Sbjct: 9   VHCYKKVGIALTVLVISCSWAIATPKEAYPDKYAAIVIDANTGKTLFQANATLKRYPASL 68

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           TKMMT+Y+IFE +++ ++  NT IP+S  AAT+ P+K+ +K     + E    ALIT+SA
Sbjct: 69  TKMMTVYMIFEAIKNGRVTPNTPIPISNYAATRPPTKIGIKAGQTISIEAATKALITKSA 128

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           NDV+TA GE++ GSE+KFA +M+ KA+K+GM+NT + NASGL D    +TA+D A L + 
Sbjct: 129 NDVATAIGEYLGGSEQKFAQMMTIKARKLGMKNTHFANASGLPDTRNYSTAQDMATLALA 188

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           LR++FP+ YK F    F++R + I NHN L+  +  +DGIKTGYT+ SG N+ TS+R   
Sbjct: 189 LRRHFPEQYKLFKTTHFKFRGKTINNHNTLIKTIKGVDGIKTGYTQMSGSNLATSMRING 248

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
             IVAVVMG  +S  R+     L+  +L K +
Sbjct: 249 RSIVAVVMGGKSSNTRNIHMANLLKQYLPKAS 280


>gi|251790547|ref|YP_003005268.1| D-alanyl-D-alanine carboxypeptidase fraction A [Dickeya zeae
           Ech1591]
 gi|247539168|gb|ACT07789.1| Beta-lactamase [Dickeya zeae Ech1591]
          Length = 403

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 87/299 (29%), Positives = 151/299 (50%), Gaps = 20/299 (6%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASEL------HAKP---KYSSIVIDVNKNQMTGFKQ 71
           S + +R    +G +L +S    + A ++       A P     + I+ID N  ++   K 
Sbjct: 7   SCFTKRI--ALGTLLAISASTFAYADDINLKTMIPAVPDIDAEAYILIDYNSGKVLAEKN 64

Query: 72  -DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKT 124
            D  R PASLTKMMT Y+I + +++ K+  N  + + K A        Q  S ++LK   
Sbjct: 65  ADTRRNPASLTKMMTSYVIGQAIKAGKITPNDVVTIGKDAWATGNPDFQGSSLMFLKPGD 124

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
                     +I +S ND   A  ++++GS+  F  LM+   K +G+QNT +K   GL  
Sbjct: 125 RVPVYLLNKGIILQSGNDACVAMADYVAGSQDAFVNLMNGYVKALGLQNTNFKTVHGLDA 184

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTG 243
           + Q ++ARD A++G  L ++ P  Y  +  ++F + N    N N LL      +DGIKTG
Sbjct: 185 EGQFSSARDMALIGQALIRDVPDEYATYKEKEFTFNNIRQMNRNGLLWDSSLAVDGIKTG 244

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE-KKTLKHQQTHRK 301
           +T ++G+N+V S       +++ VMG  T + R+ ++ +L+T      +T+   +T ++
Sbjct: 245 HTASAGYNLVASATEGQVRLISAVMGGRTFKGREAESKKLLTWGFRFFETVAPLKTGKE 303


>gi|319651421|ref|ZP_08005550.1| DacF protein [Bacillus sp. 2_A_57_CT2]
 gi|317396952|gb|EFV77661.1| DacF protein [Bacillus sp. 2_A_57_CT2]
          Length = 387

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 85/317 (26%), Positives = 159/317 (50%), Gaps = 14/317 (4%)

Query: 24  IQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYP 77
           ++R + LM   L ++ I +       +S   A    S+I+I+ +   +   K   E   P
Sbjct: 1   MKRLVSLMLITLLMATIFVPSGFARESSADLADNVKSAILIERDTGSILYEKNSGEQLPP 60

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MT+ +I E +   KL  + +I  S+ AA+   S+++L+     TT+Q +  +  
Sbjct: 61  ASMTKVMTMLLIMEAIDEGKLSWDEKIRTSEYAASMGGSQIFLEPGEEMTTKQMLQGIAI 120

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND S A  E I+GSE+ F  +M+NKAK++G++NT ++N +GL  K   +TA D AI+
Sbjct: 121 GSGNDASVAMAERIAGSEEAFVEMMNNKAKELGLKNTNFQNPTGLSAKEHYSTAHDMAIM 180

Query: 198 GILLRKNFPQYYKYFSI-----RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
              L K + +   +        R+   +   + N N+L+     +DG+KTG+T  + + +
Sbjct: 181 AKELLK-YEKITDFTGTYEAYLREDTDKKFWLVNTNRLVRFYPGVDGLKTGFTSEAKYCL 239

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK--HQQTHRKDNLSSTSLK 310
             +       ++AVV G PTS+ER+ +  +++     +      +++ H    ++ +  +
Sbjct: 240 TATAEKDGMRVIAVVFGAPTSKERNAQVTKMLDYAFSQYKTHPMYERNHVLGKVAVSKGE 299

Query: 311 KSLMIKKLKRTYSQFKK 327
           K ++        S   K
Sbjct: 300 KKMVEALTSEPISLLTK 316


>gi|315633663|ref|ZP_07888953.1| D-alanyl-D-alanine carboxypeptidase DacA [Aggregatibacter segnis
           ATCC 33393]
 gi|315477705|gb|EFU68447.1| D-alanyl-D-alanine carboxypeptidase DacA [Aggregatibacter segnis
           ATCC 33393]
          Length = 399

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 82/288 (28%), Positives = 148/288 (51%), Gaps = 17/288 (5%)

Query: 27  NIQLMGKILFLSIIMIS-------MASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPA 78
            I L+   L  S   ++          E++A+   + I++D N   +      D+ +YPA
Sbjct: 14  KIALIAGALCASFSAVADDIQFNIAVPEINAQ---TYILMDYNSGTVLVALNPDQRQYPA 70

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILAL 135
           SLTKMMT Y+  + L+  K+H    + + ++A  QN    SK++L      +       +
Sbjct: 71  SLTKMMTSYVTGQALKQGKIHDTDVVTIGESAWGQNFPGSSKMFLNLNQQVSVADLNRGI 130

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S ND   A  E +SG+   F   M+   ++ G++NT +    GL D+NQ ++ARD A
Sbjct: 131 VIVSGNDACVAMAEHVSGTVTNFVATMNKYVEQFGLKNTHFTTVHGLDDENQYSSARDMA 190

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVT 254
           I+G  + ++ P+ YK ++ + F +      N N LL  K  ++DG+KTG+T  +G+N+V 
Sbjct: 191 IIGAHIIRDLPEEYKIYAEKDFTFNKIKQPNRNGLLWDKTIHVDGMKTGHTDKAGYNLVA 250

Query: 255 SLRY-KDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHR 300
           S     +  +++VVMG+PT + R+ ++ +L+       +T K  +  +
Sbjct: 251 SATNPNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTFEAGK 298


>gi|157369441|ref|YP_001477430.1| D-alanyl-D-alanine carboxypeptidase fraction A [Serratia
           proteamaculans 568]
 gi|157321205|gb|ABV40302.1| Serine-type D-Ala-D-Ala carboxypeptidase [Serratia proteamaculans
           568]
          Length = 428

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 142/298 (47%), Gaps = 22/298 (7%)

Query: 13  TFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP--------------KYSSIV 58
           T +      +    + +L+  I   ++I +S  S  HA                  S ++
Sbjct: 17  TLMDVVVSIMKQVTSFRLIKSIALGTVIAMSATSVAHADDVNIKTMIPGVPQIDAESYVL 76

Query: 59  IDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----- 112
           ID N  ++      D  R PASLTKMMT Y+I + L++ K+     + V + A       
Sbjct: 77  IDYNSGKVLAEMNADARRDPASLTKMMTSYVIGQALKAGKIGQEDMVTVGQDAWATGNPV 136

Query: 113 -QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            +  S ++LK        +    +  +S ND   A  ++++GS+  F  LM+    K+G+
Sbjct: 137 FKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDAFVNLMNTYVSKLGL 196

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           QNT ++   GL  + Q ++ARD A++G  L ++ P  Y  +  ++F + N    N N LL
Sbjct: 197 QNTHFQTVHGLDAQGQYSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQMNRNGLL 256

Query: 232 NKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
                N+DGIKTG+T  +G+N+V S       +++ V+G  T + R+ ++ +L+T   
Sbjct: 257 WDTSLNVDGIKTGHTDAAGYNLVASATEGQMRLISAVLGGRTYKGRETESKKLLTWGF 314


>gi|192291929|ref|YP_001992534.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris TIE-1]
 gi|192285678|gb|ACF02059.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris TIE-1]
          Length = 585

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 110/241 (45%), Positives = 155/241 (64%), Gaps = 1/241 (0%)

Query: 51  KPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
            P ++SI++D N   +      D  R+PASLTK+MTLY++FE L+  KL L++++ VS+ 
Sbjct: 54  NPAFASIIVDGNTGAVLTATNPDSLRHPASLTKIMTLYLLFEKLEQGKLSLDSEMEVSEH 113

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A+ Q P+KL L+  +    E  I  L+TRSAND +    E + GSE  FA LM+ KA+ +
Sbjct: 114 ASEQAPTKLGLRPGSTLRVEDAIKGLVTRSANDAAVVIAETVGGSESDFAKLMTRKARAL 173

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM  T+Y+NASGL +  Q+TTARDQ+ILG  ++  FP+YY+YF+   F YR   I NHN+
Sbjct: 174 GMSRTVYRNASGLPNDEQVTTARDQSILGRAIQDRFPRYYRYFATSVFNYRGHAIRNHNR 233

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           LL  +  +DGIKTGYTR SGFN+VTS+   +  +V VV+G  +   RD     L+   LE
Sbjct: 234 LLGNVEGVDGIKTGYTRASGFNLVTSMHRGNRFLVGVVLGGRSGGSRDAIMRNLLAENLE 293

Query: 290 K 290
           K
Sbjct: 294 K 294


>gi|260754913|ref|ZP_05867261.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
           str. 870]
 gi|260675021|gb|EEX61842.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
           str. 870]
          Length = 461

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 114/312 (36%), Positives = 182/312 (58%), Gaps = 8/312 (2%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYI 88
           L+  +   S +     +      +Y++IV+D N  +       D  RYPASLTKMMTLY+
Sbjct: 10  LLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLYM 69

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           +FE + + +++ +T+IPVS  AA++ P+K+  +       E   LA+IT+SANDV+ A G
Sbjct: 70  LFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVG 129

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E++ GSE++FA +M+ +A+++GM+NT ++NASGL +  Q ++ARD AILG+ LR++FP+ 
Sbjct: 130 EYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPRE 189

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           + YFS   F +R + I  HN+LL ++  +DGIKTGYT  SG+N+V+S+      +VAVVM
Sbjct: 190 FAYFSRSSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVM 249

Query: 269 GMPTSQERDQKALELITSFL-------EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRT 321
           G  T   RD    +LI  +L           L   ++     ++S  L K+         
Sbjct: 250 GGNTGASRDAHMAQLIRKYLPMAARGRNNDALIAARSEDPQVVASIDLPKAKRAPVPVAR 309

Query: 322 YSQFKKIDAKAH 333
            +    I+A+  
Sbjct: 310 IAVEDIINAEIG 321


>gi|157369871|ref|YP_001477860.1| Serine-type D-Ala-D-Ala carboxypeptidase [Serratia proteamaculans
           568]
 gi|157321635|gb|ABV40732.1| Serine-type D-Ala-D-Ala carboxypeptidase [Serratia proteamaculans
           568]
          Length = 401

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 78/282 (27%), Positives = 142/282 (50%), Gaps = 17/282 (6%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGF-KQDE 73
           ++RN+    K L  S+ ++ +A  +               + +++D N  ++      D 
Sbjct: 2   MKRNLPSTLKKLTFSVSILLLAVPVVQAAEAPAAPQVDAKAYVLMDYNSGKILAEGNADT 61

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFT 127
              PASLTK+M+ Y+I + +++ K+     + V K A        +  S +++K      
Sbjct: 62  RLDPASLTKIMSSYVIGQAIKAGKIKPEDMVTVGKDAWATGNPALRGSSLMFIKPGDQVP 121

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
             +    ++ +S ND S A  ++++GS+  F  LM+N AK +G+QNT +    GL  + Q
Sbjct: 122 VMELNKGIVIQSGNDASIALADYVAGSQDSFVGLMNNYAKSLGLQNTHFLTVHGLDAEGQ 181

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTR 246
            +TARD A+LG  L ++ P  Y     ++F +      N N+LL   + ++DGIKTGYT 
Sbjct: 182 YSTARDMALLGQALIRDVPDEYALHKEKEFTFNKIRQVNRNRLLWSTNLSVDGIKTGYTG 241

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            +G N+V S       +++VV+G P+ + R  ++ +L+T   
Sbjct: 242 GAGHNLVASATDGPMRLISVVLGAPSDRIRFSESEKLLTWGF 283


>gi|294084619|ref|YP_003551377.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664192|gb|ADE39293.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 437

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 113/266 (42%), Positives = 172/266 (64%), Gaps = 2/266 (0%)

Query: 29  QLMGKILFLSIIMISMASELHA-KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           +L    +F+ +   ++     A   KY+SIVI+    ++   +  D  RYPASLTK+MTL
Sbjct: 16  RLRAFFIFMMLSCGALIWPQQAMASKYASIVINAESGRVMYARNADAMRYPASLTKIMTL 75

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y++FE ++S ++ +N++I VSK AA+++PSKLYLK     + EQ I AL+T+SANDV+TA
Sbjct: 76  YLLFEEIKSGRMDMNSRIGVSKLAASRSPSKLYLKPGQSISAEQAIYALVTKSANDVATA 135

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E ISG+E+ FA  M+ KA+ +GM+ T++KNASGL    Q TTARD A L + +R++FP
Sbjct: 136 VAEAISGTERNFAKRMTRKARALGMRKTVFKNASGLPHSQQKTTARDMARLAVAMRRDFP 195

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           + Y+YFS + F ++ R   NHNKLL      DGIKTGY   SGFN+V S++     ++ V
Sbjct: 196 RLYRYFSTQNFNWKGRKFGNHNKLLAHYSGTDGIKTGYINASGFNLVASVKRHGVRLIGV 255

Query: 267 VMGMPTSQERDQKALELITSFLEKKT 292
           + G  TS+ RD   ++++ +  ++  
Sbjct: 256 IFGGKTSRSRDAHMMKILDAQFKRAK 281


>gi|188533505|ref|YP_001907302.1| D-alanyl-D-alanine carboxypeptidase [Erwinia tasmaniensis Et1/99]
 gi|188028547|emb|CAO96409.1| Penicillin-binding protein 6B precursor (D-alanyl-D-alanine
           carboxypeptidase) [Erwinia tasmaniensis Et1/99]
          Length = 383

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 75/263 (28%), Positives = 134/263 (50%), Gaps = 10/263 (3%)

Query: 35  LFLSIIMISMASELHAK--PKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFE 91
           L +S+  ++ A+E+        S +++D    Q+    + DE R PASLTK+MT Y++  
Sbjct: 11  LLISLYGVAHAAEVTPPVIDAASWVLMDATTGQILTSGQPDERRNPASLTKLMTGYVVDR 70

Query: 92  YLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
            +  K++  +  + V K A        +  S ++LK     +       +I  S ND   
Sbjct: 71  AIDQKRITRDDVVTVGKDAWAAGNPVFKGSSLMFLKPGEKVSVRDLSRGVIIDSGNDACV 130

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  ++++GS+  F  +M++  +K+G+ NT ++   GL    Q TTARD A L   +    
Sbjct: 131 ALADYVAGSQNNFVSMMNHYVEKLGLSNTHFETVHGLDAPGQFTTARDLATLSRAIISGE 190

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           P +Y+ +S +   +      N N LL     ++DG+KTG+T ++GFNI+ S       ++
Sbjct: 191 PDFYQMYSEKSLTWNGITQQNRNGLLWDKELHVDGLKTGHTESAGFNIIASSLDGQRRLI 250

Query: 265 AVVMGMPTSQERDQKALELITSF 287
           AVVMG  + + R+++A +L+   
Sbjct: 251 AVVMGGKSPKGREEQARQLLLWG 273


>gi|312110348|ref|YP_003988664.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y4.1MC1]
 gi|311215449|gb|ADP74053.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y4.1MC1]
          Length = 393

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 88/321 (27%), Positives = 160/321 (49%), Gaps = 26/321 (8%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYS-------------SIVIDVNKNQMTGFKQ-DEPR 75
           L+  +LF SI + +++S +HA+ K S             +I+I+ +   +   K  +E  
Sbjct: 5   LIRLLLFASIFLFTISSYVHAEEKKSTARGIELASEARSAILIERDTGAVLYEKNANEKL 64

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
            PAS+TK+MT+ +I E +   +L    ++  S+ AA+   S+++L+     T ++ +  +
Sbjct: 65  PPASMTKIMTMLLIMEAIDKGELSYKEKVRASEYAASMGGSQIFLEPGEEMTVDELLRGI 124

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
              S ND S A  E I+GSE+ F  +M+ KAK++G++NT ++NA+GL  K   ++A D A
Sbjct: 125 AIGSGNDASVALAERIAGSEEAFVEMMNKKAKELGLKNTSFQNATGLPAKGHYSSAHDMA 184

Query: 196 ILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           I+   L K +    KY S     +R+   +   + N N+L+     +DG+KTG+T  + +
Sbjct: 185 IMARELLK-YEDITKYTSKYEDYLRENTDKKFWLVNTNRLVKFYPGVDGLKTGFTSEAKY 243

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT----LKHQQTHRKDNLSS 306
            +  + +     ++AVV G PT +ER+ +   ++     +      LK  +     N+S 
Sbjct: 244 CLTATAKKNGMRVIAVVFGAPTPKERNAQITRMLDYAFSQYKTHPVLKRNEVVAHANVS- 302

Query: 307 TSLKKSLMIKKLKRTYSQFKK 327
              KK  +        S   K
Sbjct: 303 -KGKKKTVALVTSEPISVLTK 322


>gi|329123117|ref|ZP_08251687.1| D-alanyl-D-alanine carboxypeptidase DacA [Haemophilus aegyptius
           ATCC 11116]
 gi|327471672|gb|EGF17114.1| D-alanyl-D-alanine carboxypeptidase DacA [Haemophilus aegyptius
           ATCC 11116]
          Length = 393

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 87/286 (30%), Positives = 149/286 (52%), Gaps = 18/286 (6%)

Query: 33  KILFLSIIMISMASELHA--------KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASL 80
           KI FLS  +   A  + A         P+ ++   +++D N   +      D+ +YPASL
Sbjct: 7   KIAFLSSFVALSAFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASL 66

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALIT 137
           TKMMT Y++   L+  K+H    + + ++A  +N    SK++L   T  +       +I 
Sbjct: 67  TKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIV 126

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND + A  E ISG+   F   M+   ++ G++NT +    GL D NQ ++ARD AI+
Sbjct: 127 VSGNDATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAII 186

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
           G  + ++ P+ YK +S + F +      N N LL  K  N+DG+KTG+T  +G+N+V S 
Sbjct: 187 GAHIIRDLPEEYKIYSEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASA 246

Query: 257 -RYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHR 300
               +  +++VVMG+PT + R+ ++ +L+       +T K  +  +
Sbjct: 247 TTSNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEASK 292


>gi|289209131|ref|YP_003461197.1| beta-lactamase [Thioalkalivibrio sp. K90mix]
 gi|288944762|gb|ADC72461.1| Beta-lactamase [Thioalkalivibrio sp. K90mix]
          Length = 415

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 87/315 (27%), Positives = 158/315 (50%), Gaps = 30/315 (9%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMIS------------MASELHAKP----KYSSIV 58
           +  P  S+  +  + L   +   ++  ++            M S + + P      S  +
Sbjct: 1   MIPPLHSVARRALMTLSLAVCVAAMPAMADEPLPVPGSGGAMPSGIPSPPSDVTAKSYAL 60

Query: 59  IDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT---QN 114
           +D +   M   ++ +  R PASLTK+MT Y++F  ++  +L L   + +S+ A     + 
Sbjct: 61  MDFDSGLMLASREADVDREPASLTKLMTAYVVFGEIRDGRLGLEDTVTISERAWRTGMRG 120

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S+++++       E  +  +I +S ND STA  E ++GSE  F  +M+N+A+++GM  +
Sbjct: 121 ASRMFIEVGDEVKVEDLLRGMIIQSGNDASTALAEAVAGSEGAFVDMMNNQARELGMTRS 180

Query: 175 IYKNASGLH-DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
            + N+ GL  D+ Q T+A+D A+L   L + FP  Y Y+S R F + +   +N N LL +
Sbjct: 181 YFTNSHGLPSDEPQSTSAQDMALLARALIREFPDLYGYYSERSFEFNDISQSNRNMLLWR 240

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE------RDQKALELITS- 286
               DG+KTG+T  +G+N+V+S +  D  ++AVV+G+  S        R  ++  L+   
Sbjct: 241 DAGFDGLKTGWTSAAGYNLVSSAKRSDRRLIAVVLGIEASNHQEGGTRRANESQALVNWG 300

Query: 287 --FLEKKTLKHQQTH 299
             F E + L    T 
Sbjct: 301 MRFTEPQRLFEAGTQ 315


>gi|316933618|ref|YP_004108600.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris DX-1]
 gi|315601332|gb|ADU43867.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris DX-1]
          Length = 576

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 113/277 (40%), Positives = 166/277 (59%), Gaps = 4/277 (1%)

Query: 51  KPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
            P ++SI++D N   +      D  R+PASLTK+MTLY++FE L+  KL L++++ VS+ 
Sbjct: 53  NPAFASIIVDGNSGAVLSATNPDSQRHPASLTKIMTLYLLFERLEQGKLSLDSEMEVSEF 112

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A+ Q P+KL L+       E  I  L+TRSAND +    E I GSE +FA +M+ KA+ +
Sbjct: 113 ASGQAPTKLGLRPGQKLRVEDAIKGLVTRSANDAAVVIAETIGGSEAEFARMMTRKARAL 172

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM  T+Y+NASGL +  Q+TTARDQ+ILG  ++  FP+YY+YFS   F YR + I NHN+
Sbjct: 173 GMSRTVYRNASGLPNSEQVTTARDQSILGRAVQDRFPRYYRYFSTSVFAYRGQSIRNHNR 232

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           LL  +  +DGIKTGYTR SGFN+VTS+   +  +V VV+G  +   RD     L+   LE
Sbjct: 233 LLGSVEGVDGIKTGYTRASGFNLVTSMHRGNRFLVGVVLGGRSGGSRDAIMRNLLAENLE 292

Query: 290 KKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
           K   +       +    +S    + + +  R+    +
Sbjct: 293 KGATRRTVAAITE---RSSGSDDIEVAETSRSAPPVQ 326


>gi|260427958|ref|ZP_05781937.1| serine-type D-Ala-D-Ala carboxypeptidase [Citreicella sp. SE45]
 gi|260422450|gb|EEX15701.1| serine-type D-Ala-D-Ala carboxypeptidase [Citreicella sp. SE45]
          Length = 519

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 93/266 (34%), Positives = 149/266 (56%), Gaps = 2/266 (0%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
            G    L+I+M++          ++++V+D    ++   +  D P +PASLTKMMTLYI 
Sbjct: 12  AGLQFILAIVMLAAMPLSAIAAPFAAMVMDARSGEVLHSENADTPLHPASLTKMMTLYIA 71

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           FE ++  ++ +++ + VS+ AA++ PSKL L+E         + A   +SAND +TA GE
Sbjct: 72  FEAVEHGEITMDSVVTVSRNAASEPPSKLGLREGQKIKLRYLVRAAAVKSANDAATAIGE 131

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            I+GSE  FA  M+  AK +GM  + +KNA+GL +   ++TARD +ILG  +  ++PQYY
Sbjct: 132 AIAGSEAAFARRMNRTAKALGMTRSTFKNANGLTESGHMSTARDMSILGRHMVYDYPQYY 191

Query: 210 KYFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             FS        R + N N + L      DGIKTGYTR +GFN+V S     + ++  V 
Sbjct: 192 NLFSRISTSAGVREVANTNRRFLGSYKGADGIKTGYTRAAGFNLVASAERGQERVITTVF 251

Query: 269 GMPTSQERDQKALELITSFLEKKTLK 294
           G  ++  R+ K  +L+    ++   +
Sbjct: 252 GGASTAARNAKVAQLMDLGFKRAKTR 277


>gi|153829019|ref|ZP_01981686.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 623-39]
 gi|148875448|gb|EDL73583.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 623-39]
          Length = 389

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 81/324 (25%), Positives = 154/324 (47%), Gaps = 17/324 (5%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASL 80
             ++ ++  M  +  L    +++  E         ++ID +  ++           PASL
Sbjct: 6   FLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPASL 65

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALIT 137
           TK+MT Y+  + ++   +H + Q+ +S  A  +   + SK++++  TY         LI 
Sbjct: 66  TKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLIV 125

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL +    +T  D A+L
Sbjct: 126 QSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIALL 185

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
           G  + ++ P+ Y  +S   F Y      N N LL  +  N+DG+KTGYT  +G+++ +S 
Sbjct: 186 GRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASSA 245

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK----------TLKHQQTHRKDNLSS 306
              +  +++VVMG  + + R+ ++ +L++                 +++Q+    D    
Sbjct: 246 TSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDSVIQNQRLWYGDKNEV 305

Query: 307 TSLKKSLMIKKLKRTYSQFKKIDA 330
                  +   L R  S  KK++A
Sbjct: 306 ALGSADTVYLTLPR--SDVKKLNA 327


>gi|49474302|ref|YP_032344.1| penicillin-binding protein [Bartonella quintana str. Toulouse]
 gi|49239806|emb|CAF26196.1| Penicillin-binding protein [Bartonella quintana str. Toulouse]
          Length = 450

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 118/271 (43%), Positives = 169/271 (62%), Gaps = 1/271 (0%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASL 80
           ++  + + +   +L LS    S   +     KY++IVID N  +          RYPASL
Sbjct: 9   VHCYKKVAIAFIVLALSCFCASATPQEVYPDKYAAIVIDANTGKTLFQANATLKRYPASL 68

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           TKMMTLY++F+ +  +++  NT IPVS+ AA + P+KL LK     + ++   ALITRSA
Sbjct: 69  TKMMTLYMLFQAMHMRRVTPNTPIPVSRNAAARPPTKLGLKAGQTISAQEAAKALITRSA 128

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           NDV+TA  E++ G+EKKFA +M+ KA+K+GM NT + NASGL D    +TARD A L + 
Sbjct: 129 NDVATAVAEYLGGNEKKFARMMTAKARKLGMTNTHFANASGLPDLRNYSTARDMATLSLA 188

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           LRK+FPQ YK F  + F +R   + +HNKL+  M  +DGIKTGYT+ SG N+ TS+  + 
Sbjct: 189 LRKHFPQQYKLFKTKSFVFRGHTVKSHNKLVKTMKGVDGIKTGYTQMSGSNLATSMHIEG 248

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEKK 291
             +VAVVMG  +S  RD+    L++ +L K 
Sbjct: 249 RSLVAVVMGGKSSTARDRHMANLLSQYLPKA 279


>gi|260565574|ref|ZP_05836058.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
           16M]
 gi|260151642|gb|EEW86736.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
           16M]
 gi|326538900|gb|ADZ87115.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis
           M5-90]
          Length = 461

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 114/312 (36%), Positives = 182/312 (58%), Gaps = 8/312 (2%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYI 88
           L+  +   S +     +      +Y++IV+D N  +       D  RYPASLTKMMTLY+
Sbjct: 10  LLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLYM 69

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           +FE + + +++ +T+IPVS  AA++ P+K+  +       E   LA+IT+SANDV+ A G
Sbjct: 70  LFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVG 129

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E++ GSE++FA +M+ +A+++GM+NT ++NASGL +  Q ++ARD AILG+ LR++FP+ 
Sbjct: 130 EYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPRE 189

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           + YFS   F +R + I  HN+LL ++  +DGIKTGYT  SG+N+V+S+      +VAVVM
Sbjct: 190 FAYFSRSSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVM 249

Query: 269 GMPTSQERDQKALELITSFL-------EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRT 321
           G  T   RD    +LI  +L           L   ++     ++S  L K+         
Sbjct: 250 GGNTGASRDAHMAQLIRKYLPMAARGRNNDALIAARSEAPQVVASIDLPKTKRAPVPVAR 309

Query: 322 YSQFKKIDAKAH 333
            +    I+A+  
Sbjct: 310 IAVEDIINAEIG 321


>gi|300692700|ref|YP_003753695.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
           [Ralstonia solanacearum PSI07]
 gi|299079760|emb|CBJ52436.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
           [Ralstonia solanacearum PSI07]
          Length = 397

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 83/271 (30%), Positives = 152/271 (56%), Gaps = 13/271 (4%)

Query: 43  SMASELHAK--PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           ++A  + A      + ++ DV   Q+ G    DE   PASLTK+MT Y+ FE ++  KL 
Sbjct: 29  ALAQPVPAPQVAARAWMLTDVTSGQVLGGGNMDERIEPASLTKLMTAYLAFEAVRDGKLK 88

Query: 100 LNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
            +  +  ++T      + S+++L+        + +  LI +S ND +    E + G+E  
Sbjct: 89  YDQMVTPTETVRSVKTDESRMFLQAGKPAAVRELLQGLIVQSGNDAALVLAEAVGGTEAN 148

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F +LM+ +A+++GM+NT + NA+GL D N  TTARD +IL   L ++FP+ YK++S ++F
Sbjct: 149 FVMLMNREAERLGMKNTHFMNAAGLPDPNHYTTARDLSILTTALIRDFPEDYKFYSQKEF 208

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGM 270
            Y N    N N+LL     +DG+KTG+T+++G+ ++TS +            +++V++G 
Sbjct: 209 TYNNIKQPNRNRLLWIDPTVDGVKTGHTKSAGYCLITSAKRPLPDMPNASRRLLSVMIGT 268

Query: 271 PTSQERDQKALELITSFLE-KKTLKHQQTHR 300
            + Q R Q++L+++    +   TL+  +  +
Sbjct: 269 KSEQVRTQESLKVLNYGYQFFDTLRLYEARQ 299


>gi|229514750|ref|ZP_04404211.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TMA 21]
 gi|229348730|gb|EEO13688.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TMA 21]
          Length = 389

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 81/324 (25%), Positives = 154/324 (47%), Gaps = 17/324 (5%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASL 80
             ++ ++  M  +  L    +++  E         ++ID +  ++           PASL
Sbjct: 6   FLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPASL 65

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALIT 137
           TK+MT Y+  + ++   +H + Q+ +S  A  +   + SK++++  TY         LI 
Sbjct: 66  TKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLIV 125

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL +    +T  D A+L
Sbjct: 126 QSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIALL 185

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
           G  + ++ P+ Y  +S   F Y      N N LL  +  N+DG+KTGYT  +G+++ +S 
Sbjct: 186 GRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASSA 245

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK----------TLKHQQTHRKDNLSS 306
              +  +++VVMG  + + R+ ++ +L++                 +++Q+    D    
Sbjct: 246 TSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDSVIQNQRLWYGDKNEV 305

Query: 307 TSLKKSLMIKKLKRTYSQFKKIDA 330
                  +   L R  S  KK++A
Sbjct: 306 ALGSADTVYLTLPR--SDVKKLNA 327


>gi|156933395|ref|YP_001437311.1| D-alanyl-D-alanine carboxypeptidase [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156531649|gb|ABU76475.1| hypothetical protein ESA_01208 [Cronobacter sakazakii ATCC BAA-894]
          Length = 390

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 76/305 (24%), Positives = 141/305 (46%), Gaps = 14/305 (4%)

Query: 26  RNIQLMGKILFLSIIMISMASEL--HAKPKY---SSIVIDVNKNQMTGFKQDEP-RYPAS 79
           R +  +  I+   I   + A+ L     P     S +++D    Q+     +   R PAS
Sbjct: 6   RPMIAVSCIMLAGITAQANAAALSMPQPPAIMAGSYVLMDYTTGQILAANNEHQQRNPAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++   + S ++  +  + V K A        +  S ++LK     T      
Sbjct: 66  LTKLMTGYVVDRAIDSHRITPDDVVTVGKDAWAKDNPVFEGSSLMFLKAGDRVTVRDLSR 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI  S ND   A  ++++G + +F  +M++  +K+G+++T ++   GL    Q ++A D
Sbjct: 126 GLIVDSGNDACVALADYVAGGQPQFVAMMNDYVQKLGLKDTHFETVHGLDAPGQHSSAYD 185

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNI 252
            A+L   +    P +Y  +S +   +      N N LL  K  N+DG+KTG+T  +GFN+
Sbjct: 186 LAVLSRAIIHGEPAFYHMYSEKSLTWNGITQQNRNGLLWDKTLNVDGLKTGHTSGAGFNL 245

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK-KTLKHQQTHRKDNLSSTSLKK 311
           + S       ++AV+MG  + + R+ +A +L+    +   T++  Q  +K         K
Sbjct: 246 IASSVDGKRRLIAVIMGADSPKGREDQARKLLHWGQQTFDTVEILQKGKKVGTERVWYGK 305

Query: 312 SLMIK 316
              + 
Sbjct: 306 DEQVA 310


>gi|261212007|ref|ZP_05926293.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC341]
 gi|260838615|gb|EEX65266.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC341]
          Length = 347

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 86/283 (30%), Positives = 140/283 (49%), Gaps = 16/283 (5%)

Query: 59  IDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN--- 114
           +D +  ++   K+ +    PASLTKMMT Y+I + ++   + LN  + +SK A  +N   
Sbjct: 1   MDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQEIKRGNISLNDDVVISKNAWAKNFPD 60

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            SK++++  T          +I +S ND   A  E ++GSE  F  LM+  A  +GM+N+
Sbjct: 61  SSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHVAGSEDAFVDLMNAWASSLGMKNS 120

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-K 233
            + NA GL + N  +T  D A+LG  L ++ P  Y  +S +KF Y      N N LL  K
Sbjct: 121 HFTNAHGLDNPNLYSTPYDLALLGQALIRDVPDEYAIYSEQKFTYNGITQYNRNGLLWDK 180

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI---TSFLEK 290
             N+DGIKTG+T  +G+N+V+S    +  +VAVVMG  +   R  ++ +L+     F E 
Sbjct: 181 SMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGTDSENARKAESKKLLGYGFRFFET 240

Query: 291 -------KTLKHQQTHRKD-NLSSTSLKKSLMIKKLKRTYSQF 325
                  +T  ++     D N  +  + K   +   +      
Sbjct: 241 VAPHKAGETFVNEAIWMGDKNTVALGVDKDTYVTLPRGQAKDL 283


>gi|62290085|ref|YP_221878.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str.
           9-941]
 gi|82700009|ref|YP_414583.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis biovar
           Abortus 2308]
 gi|148560388|ref|YP_001259090.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840]
 gi|163843436|ref|YP_001627840.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445]
 gi|225627640|ref|ZP_03785677.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo]
 gi|237815590|ref|ZP_04594587.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A]
 gi|254697529|ref|ZP_05159357.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254701913|ref|ZP_05163741.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
           513]
 gi|254706648|ref|ZP_05168476.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M163/99/10]
 gi|254710245|ref|ZP_05172056.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           B2/94]
 gi|254714241|ref|ZP_05176052.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
 gi|254717677|ref|ZP_05179488.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
 gi|256031739|ref|ZP_05445353.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M292/94/1]
 gi|256061252|ref|ZP_05451403.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
 gi|256159905|ref|ZP_05457627.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1]
 gi|256255139|ref|ZP_05460675.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94]
 gi|260168872|ref|ZP_05755683.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. F5/99]
 gi|260546634|ref|ZP_05822373.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038]
 gi|260761956|ref|ZP_05874299.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|261219519|ref|ZP_05933800.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
 gi|261222337|ref|ZP_05936618.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94]
 gi|261314108|ref|ZP_05953305.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M163/99/10]
 gi|261317805|ref|ZP_05957002.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           B2/94]
 gi|261322014|ref|ZP_05961211.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
 gi|265988836|ref|ZP_06101393.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M292/94/1]
 gi|294852510|ref|ZP_06793183.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026]
 gi|62196217|gb|AAX74517.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str.
           9-941]
 gi|82616110|emb|CAJ11149.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella
           melitensis biovar Abortus 2308]
 gi|148371645|gb|ABQ61624.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840]
 gi|163674159|gb|ABY38270.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445]
 gi|225617645|gb|EEH14690.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo]
 gi|237788888|gb|EEP63099.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A]
 gi|260095684|gb|EEW79561.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038]
 gi|260672388|gb|EEX59209.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260920921|gb|EEX87574.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94]
 gi|260924608|gb|EEX91176.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
 gi|261294704|gb|EEX98200.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
 gi|261297028|gb|EEY00525.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           B2/94]
 gi|261303134|gb|EEY06631.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M163/99/10]
 gi|264661033|gb|EEZ31294.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M292/94/1]
 gi|294821099|gb|EFG38098.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026]
          Length = 472

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 114/312 (36%), Positives = 182/312 (58%), Gaps = 8/312 (2%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYI 88
           L+  +   S +     +      +Y++IV+D N  +       D  RYPASLTKMMTLY+
Sbjct: 21  LLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLYM 80

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           +FE + + +++ +T+IPVS  AA++ P+K+  +       E   LA+IT+SANDV+ A G
Sbjct: 81  LFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVG 140

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E++ GSE++FA +M+ +A+++GM+NT ++NASGL +  Q ++ARD AILG+ LR++FP+ 
Sbjct: 141 EYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPRE 200

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           + YFS   F +R + I  HN+LL ++  +DGIKTGYT  SG+N+V+S+      +VAVVM
Sbjct: 201 FAYFSRSSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVM 260

Query: 269 GMPTSQERDQKALELITSFL-------EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRT 321
           G  T   RD    +LI  +L           L   ++     ++S  L K+         
Sbjct: 261 GGNTGASRDAHMAQLIRKYLPMAARGRNNDALIAARSEAPQVVASIDLPKAKRAPVPVAR 320

Query: 322 YSQFKKIDAKAH 333
            +    I+A+  
Sbjct: 321 IAVEDIINAEIG 332


>gi|157692847|ref|YP_001487309.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus
           SAFR-032]
 gi|157681605|gb|ABV62749.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus
           SAFR-032]
          Length = 400

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 79/313 (25%), Positives = 159/313 (50%), Gaps = 21/313 (6%)

Query: 23  YIQRNIQLMGKILFLSIIMISMA-------------SELHAKPKYSSIVIDVNKNQMTGF 69
           +++R+I  +  ++ L  ++   A             +   A    S+I+I+ +  ++   
Sbjct: 5   HLKRHICALFTLMILISMVSPSAIAKEKIEKPEEKQTSELAHEAKSAILIERDTGKVLYN 64

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           K  DE   PAS+TK+MT+ +I E +   KL +  ++  S  AA+   S+++L+     T 
Sbjct: 65  KNSDEKLAPASMTKIMTMLLIMEAIDQGKLKMTDKVRTSDHAASMGGSQIFLEPGEEMTV 124

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           ++ +  +   S ND S A  E I+GSE++F   M+ KAK++G+ +T+++N +GL +K+  
Sbjct: 125 KEMLKGIAIASGNDASVAMAEHIAGSEEQFVEQMNKKAKELGLTSTVFQNPTGLPEKDHY 184

Query: 189 TTARDQAILGILLRKNFPQYYKYFSI-----RKFRYRNRIITNHNKLLNKMHNIDGIKTG 243
           +TA D A +   L K + Q  K+  +     R+   +   + N N+L+     +DG+KTG
Sbjct: 185 STAHDMAKMAKELLK-YEQITKFTGVYEDYLRQNTDKKFWLVNTNRLIKFYPGVDGLKTG 243

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
           +T  + + +  S +  +  ++AVV G  T ++R+ + ++++     + T  H    R  +
Sbjct: 244 FTGEAKYCLTASAKKGNMRVIAVVFGASTPKDRNAQVVKMLDYAFSQYTT-HPLYKRGQD 302

Query: 304 LSSTSLKKSLMIK 316
           ++   + K    K
Sbjct: 303 VAEIKVSKGTKKK 315


>gi|90412590|ref|ZP_01220592.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
           profundum 3TCK]
 gi|90326398|gb|EAS42810.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
           profundum 3TCK]
          Length = 399

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 80/273 (29%), Positives = 140/273 (51%), Gaps = 8/273 (2%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPAS 79
           I +++ L   +   S+   + A  L + P     + +++     Q+     ++EP  PAS
Sbjct: 6   ILKHLSLFTLVTMASLPFSASADVLPSPPVIDAKAWLLMSYESGQVIASFNENEPLAPAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALI 136
           LTK+MT Y++ + + +  ++ +  + +S+ A  +     SK++L      T +Q    +I
Sbjct: 66  LTKIMTSYVVGKEINAGHINNDDLVIISENAWGKKFPGSSKMFLNIGDNVTVDQLNKGVI 125

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A  E ++G +  F  +M+ +A+ IGMQNT + N  GL    Q TTA D AI
Sbjct: 126 ISSGNDATVALAEHVAGHQAAFIEMMNRQAEVIGMQNTYFTNPHGLDADEQFTTAYDMAI 185

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTS 255
           L   L K  P+ Y  F  + F +++    N N LL     N+DG+KTG+T  +G+++V+S
Sbjct: 186 LTRALIKELPEMYGLFKEKSFTFQDIKQGNRNGLLWDTTLNVDGVKTGHTSKAGYSLVSS 245

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
                   +AVVMG  ++  R  ++ +L+T   
Sbjct: 246 AEQSGQRFIAVVMGTKSTGTRRSESKKLLTWGF 278


>gi|254693878|ref|ZP_05155706.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
           str. Tulya]
 gi|261214165|ref|ZP_05928446.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
           str. Tulya]
 gi|260915772|gb|EEX82633.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
           str. Tulya]
          Length = 472

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 114/312 (36%), Positives = 182/312 (58%), Gaps = 8/312 (2%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYI 88
           L+  +   S +     +      +Y++IV+D N  +       D  RYPASLTKMMTLY+
Sbjct: 21  LLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLYM 80

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           +FE + + +++ +T+IPVS  AA++ P+K+  +       E   LA+IT+SANDV+ A G
Sbjct: 81  LFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVG 140

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E++ GSE++FA +M+ +A+++GM+NT ++NASGL +  Q ++ARD AILG+ LR++FP+ 
Sbjct: 141 EYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPRE 200

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           + YFS   F +R + I  HN+LL ++  +DGIKTGYT  SG+N+V+S+      +VAVVM
Sbjct: 201 FAYFSRSSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVM 260

Query: 269 GMPTSQERDQKALELITSFL-------EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRT 321
           G  T   RD    +LI  +L           L   ++     ++S  L K+         
Sbjct: 261 GGNTGASRDAHMAQLIRKYLPMAARGRNNDALIAARSEAPQVVASIDLPKAKRAPVPVAR 320

Query: 322 YSQFKKIDAKAH 333
            +    I+A+  
Sbjct: 321 IAVEDIINAEIG 332


>gi|229522951|ref|ZP_04412365.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TM 11079-80]
 gi|229527763|ref|ZP_04417154.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 12129(1)]
 gi|229334125|gb|EEN99610.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 12129(1)]
 gi|229340168|gb|EEO05176.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TM 11079-80]
          Length = 389

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 80/318 (25%), Positives = 153/318 (48%), Gaps = 8/318 (2%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASL 80
             ++ ++  M  +  L    +++  E         ++ID +  ++           PASL
Sbjct: 6   FLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPASL 65

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALIT 137
           TK+MT Y+  + ++   +H + Q+ +S  A  +   + SK++++  TY         LI 
Sbjct: 66  TKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLIV 125

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL +    +T  D A+L
Sbjct: 126 QSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIALL 185

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
           G  + ++ P+ Y  +S   F Y      N N LL  +  N+DG+KTGYT  +G+++ +S 
Sbjct: 186 GRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASSA 245

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKDNLSSTSLKKSL 313
              +  +++VVMG  + + R+ ++ +L++    F E  T   + +  ++       K  +
Sbjct: 246 TSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDSVIQNQRLWYGNKNEV 305

Query: 314 MIKKLKRTYSQFKKIDAK 331
            +      Y    + D K
Sbjct: 306 ALGSADTVYLTLPRSDVK 323


>gi|92117941|ref|YP_577670.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis
           X14]
 gi|91800835|gb|ABE63210.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis
           X14]
          Length = 586

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 110/257 (42%), Positives = 161/257 (62%), Gaps = 1/257 (0%)

Query: 51  KPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
            P ++SI++D N          D  R+PASLTKMMTLY++FE L + K++L+T++ VS  
Sbjct: 52  NPPFASIIVDANSGATLSSTNPDSLRHPASLTKMMTLYLLFERLDAGKINLDTEMRVSGH 111

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           AA Q+P+KL L+       E  I  L+T+SAND +    E + G E  FA +M+ KA+ +
Sbjct: 112 AAAQDPTKLGLRSGQTIRVEDAIKGLVTKSANDAAVVIAEAVGGDEDDFARMMTRKARAL 171

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM  T+Y+NASGL D +Q+TTARDQA LG  L+  FP+YY+YF+   F +R R I  HN 
Sbjct: 172 GMTRTVYRNASGLPDDDQVTTARDQATLGRALQDRFPRYYRYFATTSFTFRGRTIRGHNH 231

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           LL  +  +DGIKTGY R+SGFN+VT+L+  +  +V VV+G  +S  RD    +L+T  L+
Sbjct: 232 LLGSVDGVDGIKTGYIRSSGFNLVTNLKRGNRHLVGVVLGGRSSGSRDATMRKLLTDNLD 291

Query: 290 KKTLKHQQTHRKDNLSS 306
           K   +       ++ ++
Sbjct: 292 KAATRRTVAAITESSTA 308


>gi|315646365|ref|ZP_07899483.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus vortex
           V453]
 gi|315278008|gb|EFU41328.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus vortex
           V453]
          Length = 396

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 84/331 (25%), Positives = 157/331 (47%), Gaps = 25/331 (7%)

Query: 24  IQRNIQLMGKILFLSIIMISMAS--------------ELHAKPKYSSIVIDVNKNQMTGF 69
           +++ +     +LF+ +   ++ S              E  A    S+I++D +   +   
Sbjct: 1   MKKALIAGFLVLFVGLSSTAVPSYAEENSKTGEGSSQEELAPSARSAILLDADTGTIIYE 60

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           K   +   PAS+TK+MT+ +  E + + +L    ++  S+ AA+   S+++L+     T 
Sbjct: 61  KNSHDKLPPASITKIMTMLLTMEAIDAGRLQWTDKVRTSEYAASMGGSQIFLEPGEEMTV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           ++ +  +   S ND S A  E ++GSE+ F  +M++KA ++GM++T + N +GL  +N  
Sbjct: 121 DEMLKGIAMASGNDASVAMAEKLAGSEQGFVKMMNDKAAELGMKDTHFVNCNGLPAENHY 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTG 243
           T+A D A++   L K + Q  KY       +RK   +   + N NKL+      DG+KTG
Sbjct: 181 TSAHDIAVMSRELLK-YEQITKYTGSYQDYLRKDSQKPFWLVNTNKLVRFYTGADGLKTG 239

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
           YT  + F +  + +      VAVVMG P ++ R+ +   +      + T+ H      + 
Sbjct: 240 YTSEAKFCLSATAKRDGLRAVAVVMGAPDTKTRNNEVSRMFDYAFAQYTM-HSIYKPGEV 298

Query: 304 LSSTSLKKSLMIK---KLKRTYSQFKKIDAK 331
           L    ++K  + +   +  R YS   K   K
Sbjct: 299 LGIVKVQKGNVPELSIQADRDYSVLVKKGVK 329


>gi|22125078|ref|NP_668501.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis KIM
           10]
 gi|45440942|ref|NP_992481.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108808491|ref|YP_652407.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis
           Antiqua]
 gi|108811250|ref|YP_647017.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis
           Nepal516]
 gi|145599915|ref|YP_001163991.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis
           Pestoides F]
 gi|149365498|ref|ZP_01887533.1| putative penicillin-binding protein 5 [Yersinia pestis CA88-4125]
 gi|162419741|ref|YP_001606339.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis
           Angola]
 gi|165937675|ref|ZP_02226237.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008297|ref|ZP_02229195.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|167398703|ref|ZP_02304227.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167423578|ref|ZP_02315331.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468426|ref|ZP_02333130.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis FV-1]
 gi|170025245|ref|YP_001721750.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia
           pseudotuberculosis YPIII]
 gi|186894472|ref|YP_001871584.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia
           pseudotuberculosis PB1/+]
 gi|218929682|ref|YP_002347557.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis
           CO92]
 gi|229838147|ref|ZP_04458306.1| putative penicillin-binding protein 5 [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229895938|ref|ZP_04511108.1| putative penicillin-binding protein 5 [Yersinia pestis Pestoides A]
 gi|229898742|ref|ZP_04513887.1| putative penicillin-binding protein 5 [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229901487|ref|ZP_04516609.1| putative penicillin-binding protein 5 [Yersinia pestis Nepal516]
 gi|270489672|ref|ZP_06206746.1| serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pestis KIM D27]
 gi|294504405|ref|YP_003568467.1| putative penicillin-binding protein 5 [Yersinia pestis Z176003]
 gi|21957931|gb|AAM84752.1|AE013720_16 D-alanyl-D-alanine carboxypeptidase, fraction A [Yersinia pestis
           KIM 10]
 gi|45435801|gb|AAS61358.1| putative penicillin-binding protein 5 [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108774898|gb|ABG17417.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Yersinia pestis Nepal516]
 gi|108780404|gb|ABG14462.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Yersinia pestis Antiqua]
 gi|115348293|emb|CAL21224.1| putative penicillin-binding protein 5 [Yersinia pestis CO92]
 gi|145211611|gb|ABP41018.1| penicillin-binding protein 5 [Yersinia pestis Pestoides F]
 gi|149291911|gb|EDM41985.1| putative penicillin-binding protein 5 [Yersinia pestis CA88-4125]
 gi|162352556|gb|ABX86504.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Angola]
 gi|165914425|gb|EDR33040.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165992679|gb|EDR44980.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|167051207|gb|EDR62615.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057748|gb|EDR67494.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169751779|gb|ACA69297.1| Serine-type D-Ala-D-Ala carboxypeptidase [Yersinia
           pseudotuberculosis YPIII]
 gi|186697498|gb|ACC88127.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Yersinia
           pseudotuberculosis PB1/+]
 gi|229681416|gb|EEO77510.1| putative penicillin-binding protein 5 [Yersinia pestis Nepal516]
 gi|229688290|gb|EEO80361.1| putative penicillin-binding protein 5 [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694513|gb|EEO84560.1| putative penicillin-binding protein 5 [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229700861|gb|EEO88890.1| putative penicillin-binding protein 5 [Yersinia pestis Pestoides A]
 gi|262362606|gb|ACY59327.1| putative penicillin-binding protein 5 [Yersinia pestis D106004]
 gi|270338176|gb|EFA48953.1| serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pestis KIM D27]
 gi|294354864|gb|ADE65205.1| putative penicillin-binding protein 5 [Yersinia pestis Z176003]
 gi|320016196|gb|ADV99767.1| putative penicillin-binding protein 5 [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 400

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 81/279 (29%), Positives = 141/279 (50%), Gaps = 19/279 (6%)

Query: 29  QLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNKNQMTGF-KQDEPRY 76
           +++  +   ++I++S A             +      + I+ID N  ++      D  R 
Sbjct: 8   RIIKSLALGTVIVMSAANADDVNLKTMIPGVPQIDAEAYILIDYNSGKVLAEMNADTRRN 67

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQ 130
           PASLTKMMT Y+I + ++S K+     + V K A        +  S ++LK        +
Sbjct: 68  PASLTKMMTSYVIGQAIKSGKIGAEDMVTVGKDAWATGNPEFKGSSLMFLKPGDRVPVSK 127

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               +  +S ND   A  ++++GS+  F  LM+N  K +G+QNT +K   GL  + Q ++
Sbjct: 128 LTRGINLQSGNDACVAMADYVAGSQDSFVNLMNNYVKALGLQNTHFKTVHGLDAEGQFSS 187

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSG 249
           ARD A++G  L ++ P  Y  +  ++F + N   TN N LL     N+DGIKTG+T  +G
Sbjct: 188 ARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQTNRNGLLWDTSLNVDGIKTGHTEAAG 247

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +N+V S       +++VV+G  T + R+ ++ +L+T   
Sbjct: 248 YNLVASATDGQMRLISVVLGGHTFKGRETESKKLLTWGF 286


>gi|328469382|gb|EGF40328.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus 10329]
          Length = 385

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 77/288 (26%), Positives = 141/288 (48%), Gaps = 13/288 (4%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEP-RYPASLT 81
            + L    +   +I +   + +   P        +++D     +           PASLT
Sbjct: 2   KVSLARWTIVTCLISVPTFAVVTPNPPQLQAKGYVLMDFQSGAIIAEHNGRAGLAPASLT 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITR 138
           K+MT Y++ + +++ +L  +  + VS+ A +      SK+++K K   +    +  +I +
Sbjct: 62  KLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAKFPGSSKMFIKPKDEISVANLMRGVIIQ 121

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND   A  E ++GSE+ F  LM+  A+K+G+Q+T + N+ GL      T+  D A L 
Sbjct: 122 SGNDACVALAEHVAGSERGFVALMNGWAEKLGLQDTYFVNSHGLDSDGIQTSPTDMAKLM 181

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLR 257
             +  + P  Y  +S + F++ +    N NKLL     ++DG KTGYT N+G+++V+S +
Sbjct: 182 QSIISDVPDVYALYSEKVFKWNDITQYNRNKLLWDNSIDVDGGKTGYTSNAGYSLVSSAK 241

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFL----EKKTLKHQQTHRK 301
                +++VVMG P+ Q R  ++  L++        K+  K  Q   K
Sbjct: 242 EGRMRLISVVMGTPSKQARISQSKNLLSYGFRFYDTKQVAKQGQVESK 289


>gi|254730424|ref|ZP_05189002.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
           str. 292]
 gi|260758130|ref|ZP_05870478.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
           str. 292]
 gi|260668448|gb|EEX55388.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
           str. 292]
          Length = 472

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 114/312 (36%), Positives = 182/312 (58%), Gaps = 8/312 (2%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYI 88
           L+  +   S +     +      +Y++IV+D N  +       D  RYPASLTKMMTLY+
Sbjct: 21  LLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLYM 80

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           +FE + + +++ +T+IPVS  AA++ P+K+  +       E   LA+IT+SANDV+ A G
Sbjct: 81  LFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVG 140

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E++ GSE++FA +M+ +A+++GM+NT ++NASGL +  Q ++ARD AILG+ LR++FP+ 
Sbjct: 141 EYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPRE 200

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           + YFS   F +R + I  HN+LL ++  +DGIKTGYT  SG+N+V+S+      +VAVVM
Sbjct: 201 FAYFSRSSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVM 260

Query: 269 GMPTSQERDQKALELITSFL-------EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRT 321
           G  T   RD    +LI  +L           L   ++     ++S  L K+         
Sbjct: 261 GGNTGASRDAHMAQLIRKYLPMAARGRNNDALIAARSEAPQVVASIDLPKAKRAPVPVAR 320

Query: 322 YSQFKKIDAKAH 333
            +    I+A+  
Sbjct: 321 IAVEDIINAEIG 332


>gi|327485477|gb|AEA79883.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae LMA3894-4]
          Length = 389

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 80/324 (24%), Positives = 154/324 (47%), Gaps = 17/324 (5%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASL 80
             ++ ++  M  +  L    +++  E         ++ID +  ++           PASL
Sbjct: 6   FLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPASL 65

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALIT 137
           TK+MT Y+  + ++   +H + ++ +S  A  +   + SK++++  TY         LI 
Sbjct: 66  TKLMTSYVAGQEMKRGNIHADDKVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLIV 125

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL +    +T  D A+L
Sbjct: 126 QSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIALL 185

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
           G  + ++ P+ Y  +S   F Y      N N LL  +  N+DG+KTGYT  +G+++ +S 
Sbjct: 186 GRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASSA 245

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK----------TLKHQQTHRKDNLSS 306
              +  +++VVMG  + + R+ ++ +L++                 +++Q+    D    
Sbjct: 246 TSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDSVIQNQRLWYGDKNEV 305

Query: 307 TSLKKSLMIKKLKRTYSQFKKIDA 330
                  +   L R  S  KK++A
Sbjct: 306 ALGSADTVYLTLPR--SDVKKLNA 327


>gi|317496786|ref|ZP_07955116.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895798|gb|EFV17950.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 399

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 94/325 (28%), Positives = 158/325 (48%), Gaps = 19/325 (5%)

Query: 26  RNIQLMGKILFLSIIMISMASEL----HAKP-----KYSSIVIDVNKNQMTGFKQ-DEPR 75
           + I L+  IL  S     MA E      A P       S+IV++    ++   K  D+  
Sbjct: 5   KVILLVAAILVQSFYCPVMAREARFLETAAPVLDLSAKSAIVMEQESKEILFAKDKDKEL 64

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
            PAS+TK+M+L +IFE L+  K+ L   + VS+ AA+   S+++L+       +  I  +
Sbjct: 65  APASVTKIMSLLLIFEDLKQGKIKLTDTVTVSEHAASMGGSQVFLETGEKQQVQTLIKCV 124

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  SAND   A  E + GSE+ F   M+ KA+++GM++T ++NA GL  K  +T+A D A
Sbjct: 125 VISSANDAVVALAEHVCGSEEAFVSRMNKKARELGMKHTTFQNACGLDTKGHVTSAYDIA 184

Query: 196 ILGILLRKNFPQYYKYFSIRKFRY--------RNRIITNHNKLLNKMHNIDGIKTGYTRN 247
           ++   L + +P+ +KY  I             +   ++N NKL+ + H   G+KTG T  
Sbjct: 185 LMTRELAQRYPEVFKYTKIWMDTIIHKTKKGEKEFGLSNTNKLIRQYHGCTGMKTGSTGK 244

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSST 307
           +GF +  +       ++AVVMG  +S+ R + A  L+          H +T RK+ +   
Sbjct: 245 AGFCLSATATRNKIHMIAVVMGCESSKARIKDARTLLDYGFSNCQRIHSETTRKE-IGRI 303

Query: 308 SLKKSLMIKKLKRTYSQFKKIDAKA 332
            ++K    +   +       ID K 
Sbjct: 304 PVQKGQRSEVSCQEKVTADLIDIKT 328


>gi|217976936|ref|YP_002361083.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris
           BL2]
 gi|217502312|gb|ACK49721.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris
           BL2]
          Length = 614

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 109/233 (46%), Positives = 162/233 (69%), Gaps = 1/233 (0%)

Query: 54  YSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +++IV+D N  +    +  DEPR+PAS+TK+MTLY++FE L+  +L L+++IP+S  AA 
Sbjct: 80  FAAIVVDGNSGEALYARNEDEPRHPASITKVMTLYLLFEQLEQGRLRLDSEIPISARAAA 139

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           Q P+KL L+     + +  I A++TRSAND++ A  E + G E +FA LM+ KA+++GM+
Sbjct: 140 QKPTKLGLRPGRTISVDDAIKAIVTRSANDIAVAIAEAVGGDEDRFADLMTRKARELGMR 199

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           NT Y NASGL    QITTARD +ILG  +++ FP+YY+YFS R F +    I NHN+L++
Sbjct: 200 NTKYVNASGLPADAQITTARDLSILGRAVQERFPRYYRYFSTRTFYFAGAAIRNHNRLMD 259

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           ++  +DGIKTGYT  SGFN++TS++     IVAVVMG  ++  RD+   +LI 
Sbjct: 260 RVEGMDGIKTGYTNASGFNLLTSVKRDGHYIVAVVMGGVSAPSRDRIMADLIE 312


>gi|39936213|ref|NP_948489.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris CGA009]
 gi|39650068|emb|CAE28591.1| possible D-alanyl-D-alanine carboxypeptidase [Rhodopseudomonas
           palustris CGA009]
          Length = 585

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 110/241 (45%), Positives = 155/241 (64%), Gaps = 1/241 (0%)

Query: 51  KPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
            P ++SI++D N   +      D  R+PASLTK+MTLY++FE L+  KL L++++ VS+ 
Sbjct: 54  NPAFASIIVDGNTGAVLTATNPDSLRHPASLTKIMTLYLLFEKLEQGKLSLDSEMEVSEH 113

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A+ Q P+KL L+  +    E  I  L+TRSAND +    E + GSE  FA LM+ KA+ +
Sbjct: 114 ASEQAPTKLGLRPGSTLRVEDAIKGLVTRSANDAAVVIAETVGGSESDFAKLMTRKARAL 173

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM  T+Y+NASGL +  Q+TTARDQ+ILG  ++  FP+YY+YF+   F YR   I NHN+
Sbjct: 174 GMSRTVYRNASGLPNDEQVTTARDQSILGRAIQDRFPRYYRYFATSVFNYRGHAIRNHNR 233

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           LL  +  +DGIKTGYTR SGFN+VTS+   +  +V VV+G  +   RD     L+   LE
Sbjct: 234 LLGNVEGVDGIKTGYTRASGFNLVTSMHRGNRFLVGVVLGGRSGGSRDAIMRNLLAENLE 293

Query: 290 K 290
           K
Sbjct: 294 K 294


>gi|297579619|ref|ZP_06941546.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC385]
 gi|297535265|gb|EFH74099.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC385]
          Length = 389

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 81/324 (25%), Positives = 154/324 (47%), Gaps = 17/324 (5%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASL 80
             ++ ++  M  +  L    +++  E         ++ID +  ++           PASL
Sbjct: 6   FLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPASL 65

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALIT 137
           TK+MT Y+  + ++   +H + Q+ +S  A  +   + SK++++  TY         LI 
Sbjct: 66  TKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLIV 125

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL +    +T  D A+L
Sbjct: 126 QSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIALL 185

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
           G  + ++ P+ Y  +S   F Y      N N LL  +  N+DG+KTGYT  +G+++ +S 
Sbjct: 186 GRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASSA 245

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK----------TLKHQQTHRKDNLSS 306
              +  +++VVMG  + + R+ ++ +L++                 +++Q+    D    
Sbjct: 246 TSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDSVIQNQRLWYGDKNEV 305

Query: 307 TSLKKSLMIKKLKRTYSQFKKIDA 330
                  +   L R  S  KK++A
Sbjct: 306 ALGSADTVYLTLPR--SDVKKLNA 327


>gi|154253237|ref|YP_001414061.1| Serine-type D-Ala-D-Ala carboxypeptidase [Parvibaculum
           lavamentivorans DS-1]
 gi|154157187|gb|ABS64404.1| Serine-type D-Ala-D-Ala carboxypeptidase [Parvibaculum
           lavamentivorans DS-1]
          Length = 558

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 121/307 (39%), Positives = 174/307 (56%), Gaps = 4/307 (1%)

Query: 6   IQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQ 65
           +Q SA  +F     G         L+   LFL   ++  A    A PK +++VID    +
Sbjct: 1   MQGSAPTSFARISLGRSKSSGGFCLI--CLFLLFGLLVAAPVQAAAPKEAALVIDAYSGK 58

Query: 66  MTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKT 124
           +   +  DE RYPASLTK+MTLY++FE LQ+ ++ L ++I ++   A   PSKL L+   
Sbjct: 59  VLYARSADEYRYPASLTKVMTLYLLFEKLQAGEVTLKSRITMTPRGAGMPPSKLGLRAGQ 118

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
             + E  ILAL+TRSANDV++A G FI+G+E  FA LM+ KA+ +GM  T YKNASGL +
Sbjct: 119 TLSVEDAILALVTRSANDVASATGAFIAGTEDDFAALMTKKARALGMTRTTYKNASGLPN 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGY 244
             Q TTARDQA L   +R++FPQYY YFS   F +    I NHN+LL +     G+KTGY
Sbjct: 179 SAQKTTARDQATLAKRIREDFPQYYHYFSTEYFAWGKARIRNHNRLLGEYKGTTGLKTGY 238

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK-TLKHQQTHRKDN 303
           T  SGFN+  ++   +  ++ VVMG   ++ RD   +E++   +     +K+  T    N
Sbjct: 239 TNASGFNLTATVERDNKFLIGVVMGGKQAKLRDAHMIEILDRAMPSAIAMKNGSTLMAAN 298

Query: 304 LSSTSLK 310
                  
Sbjct: 299 TGPAPKP 305


>gi|254689394|ref|ZP_05152648.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
           str. 870]
 gi|256257640|ref|ZP_05463176.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
           str. C68]
 gi|260883925|ref|ZP_05895539.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
           str. C68]
 gi|297248482|ref|ZP_06932200.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str.
           B3196]
 gi|260873453|gb|EEX80522.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
           str. C68]
 gi|297175651|gb|EFH34998.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str.
           B3196]
          Length = 472

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 114/312 (36%), Positives = 182/312 (58%), Gaps = 8/312 (2%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYI 88
           L+  +   S +     +      +Y++IV+D N  +       D  RYPASLTKMMTLY+
Sbjct: 21  LLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLYM 80

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           +FE + + +++ +T+IPVS  AA++ P+K+  +       E   LA+IT+SANDV+ A G
Sbjct: 81  LFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVG 140

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E++ GSE++FA +M+ +A+++GM+NT ++NASGL +  Q ++ARD AILG+ LR++FP+ 
Sbjct: 141 EYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPRE 200

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           + YFS   F +R + I  HN+LL ++  +DGIKTGYT  SG+N+V+S+      +VAVVM
Sbjct: 201 FAYFSRSSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVM 260

Query: 269 GMPTSQERDQKALELITSFL-------EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRT 321
           G  T   RD    +LI  +L           L   ++     ++S  L K+         
Sbjct: 261 GGNTGASRDAHMAQLIRKYLPMAARGRNNDALIAARSEDPQVVASIDLPKAKRAPVPVAR 320

Query: 322 YSQFKKIDAKAH 333
            +    I+A+  
Sbjct: 321 IAVEDIINAEIG 332


>gi|256369597|ref|YP_003107107.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915]
 gi|255999759|gb|ACU48158.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915]
          Length = 472

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 114/312 (36%), Positives = 182/312 (58%), Gaps = 8/312 (2%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYI 88
           L+  +   S +     +      +Y++IV+D N  +       D  RYPASLTKMMTLY+
Sbjct: 21  LLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLYM 80

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           +FE + + +++ +T+IPVS  AA++ P+K+  +       E   LA+IT+SANDV+ A G
Sbjct: 81  LFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVG 140

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E++ GSE++FA +M+ +A+++GM+NT ++NASGL +  Q ++ARD AILG+ LR++FP+ 
Sbjct: 141 EYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPRE 200

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           + YFS   F +R + I  HN+LL ++  +DGIKTGYT  SG+N+V+S+      +VAVVM
Sbjct: 201 FAYFSRSSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVM 260

Query: 269 GMPTSQERDQKALELITSFL-------EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRT 321
           G  T   RD    +LI  +L           L   ++     ++S  L K+         
Sbjct: 261 GGNTGASRDAHMAQLIRKYLPMAARGRNNDALIAARSEAPQVVASIDLPKAKHAPVPVAR 320

Query: 322 YSQFKKIDAKAH 333
            +    I+A+  
Sbjct: 321 IAVEDIINAEIG 332


>gi|254225957|ref|ZP_04919558.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V51]
 gi|125621491|gb|EAZ49824.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V51]
          Length = 389

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 81/324 (25%), Positives = 154/324 (47%), Gaps = 17/324 (5%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASL 80
             ++ ++  M  +  L    +++  E         ++ID +  ++           PASL
Sbjct: 6   FLVRFSMACMAFVPTLGFSALTVLPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPASL 65

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALIT 137
           TK+MT Y+  + ++   +H + Q+ +S  A  +   + SK++++  TY         LI 
Sbjct: 66  TKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLIV 125

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL +    +T  D A+L
Sbjct: 126 QSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIALL 185

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
           G  + ++ P+ Y  +S   F Y      N N LL  +  N+DG+KTGYT  +G+++ +S 
Sbjct: 186 GRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASSA 245

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK----------TLKHQQTHRKDNLSS 306
              +  +++VVMG  + + R+ ++ +L++                 +++Q+    D    
Sbjct: 246 TSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDSVIQNQRLWYGDKNEV 305

Query: 307 TSLKKSLMIKKLKRTYSQFKKIDA 330
                  +   L R  S  KK++A
Sbjct: 306 ALGSADTVYLTLPR--SDVKKLNA 327


>gi|238920819|ref|YP_002934334.1| D-alanyl-D-alanine carboxypeptidase fraction A [Edwardsiella
           ictaluri 93-146]
 gi|238870388|gb|ACR70099.1| D-alanyl-D-alanine carboxypeptidase DacC [Edwardsiella ictaluri
           93-146]
          Length = 403

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 83/256 (32%), Positives = 136/256 (53%), Gaps = 11/256 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   + I+ID N  ++      DE R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGVPQIDAE---AYILIDYNSGKVLAEHNADERRNPASLTKMMTSYVIGQAMRAGKFG 93

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            N  + V K A        Q  S ++LK     +    I  +   S ND   A  ++++G
Sbjct: 94  ENDVVTVGKDAWATGNPVFQGSSLMFLKPGDQVSVGNLIRGINLVSGNDACVAMADYVAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++  K +G+QNT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVKALGLQNTHFETVHGLDAPGQFSSARDMALIGQALIRDVPHEYAIYK 213

Query: 214 IRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F Y N   TN N LL     N+DGIKTG+T ++G+N+V S    +  +++ VMG  T
Sbjct: 214 EKEFTYNNIRQTNRNGLLWDTSMNVDGIKTGHTASAGYNLVASATEGNMRLISAVMGGRT 273

Query: 273 SQERDQKALELITSFL 288
            + R+ ++ +L+T   
Sbjct: 274 FKGRETESKKLLTWGF 289


>gi|254478669|ref|ZP_05092040.1| D-alanyl-D-alanine carboxypeptidase superfamily protein
           [Carboxydibrachium pacificum DSM 12653]
 gi|214035356|gb|EEB76059.1| D-alanyl-D-alanine carboxypeptidase superfamily protein
           [Carboxydibrachium pacificum DSM 12653]
          Length = 333

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 77/311 (24%), Positives = 146/311 (46%), Gaps = 19/311 (6%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           +++   L+  ++F         S++ +    ++IV+D N  ++   K    + P AS TK
Sbjct: 1   MKKYFSLLLILMFFVTFSKVYGSDIPSVSAKAAIVMDQNTGRVLYEKNAHLKLPMASTTK 60

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MTL I  E     + +LN  + VS+ AA+   S ++L        E  +  ++  S ND
Sbjct: 61  IMTLLIALE-----RGNLNDIVTVSQKAASVGGSSIWLSPGEKIDMESLLYGIMLNSGND 115

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILGIL 200
            +TA  E I G+ + F  +M+ KAK+IG  NT +   SGL     +  TTA D A++   
Sbjct: 116 AATAIAEHIGGTVENFVEMMNQKAKEIGAYNTHFVTPSGLDISIDDHYTTAYDLALITRY 175

Query: 201 LRKNFPQYYKYFSIRKFRYR------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
              N+P++ +  S ++          +R + N NKLL      DG+KTG+T  +G  +V+
Sbjct: 176 AFLNYPKFAEIVSTKEKTIPWEGKEWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVS 235

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLM 314
           S   +    +AVV+  P   E    +++++     +   K  +   ++++      +   
Sbjct: 236 SATREGRRFIAVVLNSPPMWE---DSMKILDYAFSR--FKPFKVFERNDVVKKVKVEKGK 290

Query: 315 IKKLKRTYSQF 325
           I++++    + 
Sbjct: 291 IEEIEVAVEKD 301


>gi|153839337|ref|ZP_01992004.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus
           AQ3810]
 gi|149747147|gb|EDM58135.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus
           AQ3810]
          Length = 385

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 77/288 (26%), Positives = 141/288 (48%), Gaps = 13/288 (4%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEP-RYPASLT 81
            + L    +   +I +   + +   P        +++D     +           PASLT
Sbjct: 2   KVSLARWTIVTCLISVPTFAVVTPNPPQLQAKGYVLMDFQSGAIIAEHNGRAGLAPASLT 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITR 138
           K+MT Y++ + +++ +L  +  + VS+ A +      SK+++K K   +    +  +I +
Sbjct: 62  KLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAKFPGSSKMFIKPKDEISVANLMRGVIIQ 121

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND   A  E ++GSE+ F  LM+  A+K+G+Q+T + N+ GL      T+  D A L 
Sbjct: 122 SGNDACVALAEHVAGSERGFVALMNGWAEKLGLQDTYFVNSHGLDSDGIQTSPTDMAKLM 181

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLR 257
             +  + P  Y  +S + F++ +    N NKLL     ++DG KTGYT N+G+++V+S +
Sbjct: 182 QSIISDVPDVYALYSEKVFKWNDITQYNRNKLLWDNSIDVDGGKTGYTSNAGYSLVSSAK 241

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFL----EKKTLKHQQTHRK 301
                +++VVMG P+ Q R  ++  L++        K+  K  Q   K
Sbjct: 242 EGRMRLISVVMGTPSKQARISQSKNLLSYGFRFYDTKQVAKQGQVESK 289


>gi|209549453|ref|YP_002281370.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209535209|gb|ACI55144.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 517

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 120/312 (38%), Positives = 183/312 (58%), Gaps = 5/312 (1%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLT 81
           +  + + ++   L + ++    A    A  KY+ IV+D     +   +  +   YPASLT
Sbjct: 16  FFAKLMAILSVALTVVLVDSVSAEAEAANSKYAGIVVDAKTGNVLYSENADRLQYPASLT 75

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           KMMT+Y+ FE L+  ++ L+T +P S  AA Q P+KL ++     T EQGIL L+T SAN
Sbjct: 76  KMMTIYMTFEALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSAN 135

Query: 142 DVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           D +TA GE + G SE +FA LM+ KA  +GM  T Y+NA+GL +  Q+TTARDQA LGI 
Sbjct: 136 DAATALGEMLGGGSEDRFAQLMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIA 195

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           LR++FPQYY YFS R F++  R I +HN+L+  +  +DGIKTGYTR +GFN+V+S++   
Sbjct: 196 LRQHFPQYYGYFSTRAFKFGTRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDG 255

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKR 320
             IV VV+G  ++  RD +   LI ++L K + +   +      +      ++++     
Sbjct: 256 KSIVGVVLGGASTPARDAQMRNLIATYLPKASSRGGSSALIAEAAPAP---AMIVTPAPV 312

Query: 321 TYSQFKKIDAKA 332
              + +   AK 
Sbjct: 313 MPQKAQPQVAKT 324


>gi|241204780|ref|YP_002975876.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858670|gb|ACS56337.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 517

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 123/312 (39%), Positives = 183/312 (58%), Gaps = 4/312 (1%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLT 81
           +  R + ++   + + ++         A  KY+ IV+D     +   +  +   YPASLT
Sbjct: 16  FFARLLAILSVAVTIVMVDSVNTDAEAANSKYAGIVVDAKTGNVLYSENADRLQYPASLT 75

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           KMMTLY+ FE L+  ++ L+T +P S  AA Q P+KL ++     T EQGIL L+T SAN
Sbjct: 76  KMMTLYMTFEALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSAN 135

Query: 142 DVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           D +TA GE + G SE +FA LM+ KA  +GM  T Y+NA+GL +  Q+TTARDQA LGI 
Sbjct: 136 DAATALGEMLGGGSEDRFAQLMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIA 195

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           LR++FPQYY YFS R F++ +R I +HN+L+  +  +DGIKTGYTR +GFN+V+S++   
Sbjct: 196 LRQHFPQYYGYFSTRAFKFGSRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDG 255

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTS--LKKSLMIKKL 318
             IV VV+G  ++  RD +   LI S+L K + +   +      +     ++    ++  
Sbjct: 256 KSIVGVVLGGASTPARDAQMRNLIASYLPKASSRGGSSALIAQATPAPAMIETPAPVQPK 315

Query: 319 KRTYSQFKKIDA 330
           K      K I A
Sbjct: 316 KAQQQVAKTITA 327


>gi|262164351|ref|ZP_06032089.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM223]
 gi|262026731|gb|EEY45398.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM223]
          Length = 389

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 80/313 (25%), Positives = 151/313 (48%), Gaps = 8/313 (2%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMT 85
           ++  M  +  L    +++  E         ++ID +  ++   +       PASLTK+MT
Sbjct: 11  SMACMAFVPTLGFSALTITPEPPQLAANGYVLIDYHTGKILVERNAHQKLNPASLTKLMT 70

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSAND 142
            Y+  + ++   +H   Q+ +S  A  +   + SK++++  +Y         LI +S ND
Sbjct: 71  AYVAGQEMKRGNIHAEDQVRISNNAWAKKFPDSSKMFIEVGSYVNLMDLYRGLIVQSGND 130

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            S A  E ++GSE  F  LM++ A+++GM N+ + N  GL D N  +T  D A+LG  + 
Sbjct: 131 ASVAIAEHVAGSESAFVSLMNSWAQQLGMNNSSFANPHGLDDSNLYSTPYDIALLGQAII 190

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           ++ P  Y  +S   F Y      N N LL  +  N+DG+KTGYT  +G+++ +S    + 
Sbjct: 191 RDLPDIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASSATSGEM 250

Query: 262 PIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKL 318
            +++VVMG  + + R+ ++ +L++    F E  +   +++  +        K  + +   
Sbjct: 251 RLISVVMGSKSVKIREAESKQLLSYGFRFFETVSPHQKESVIQSQRIWYGDKNEVALGSA 310

Query: 319 KRTYSQFKKIDAK 331
              Y    + D K
Sbjct: 311 DTVYLTLPRNDVK 323


>gi|238752594|ref|ZP_04614067.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia rohdei ATCC
           43380]
 gi|238709185|gb|EEQ01430.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia rohdei ATCC
           43380]
          Length = 383

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 76/256 (29%), Positives = 132/256 (51%), Gaps = 11/256 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   + ++ID N  ++      D  R PASLTKMMT Y+I + +++ K+ 
Sbjct: 17  MIPGVPQIDAE---AYVLIDYNSGKVLAEMNADTRRNPASLTKMMTSYVIGQAIKAGKIG 73

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V K A        +  S ++LK        +    +  +S ND   A  ++++G
Sbjct: 74  PEDMVTVGKDAWATGNPEFRGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAG 133

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+N    +G++NT +K   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 134 SQDSFVNLMNNYVNALGLKNTHFKTVHGLDADGQFSSARDMALIGQALIRDVPDEYAIYK 193

Query: 214 IRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F + N   TN N LL     N+DGIKTG+T  +G+N+V S       +++ V+G  T
Sbjct: 194 EKEFTFNNIRQTNRNGLLWDTSLNVDGIKTGHTDAAGYNLVASATDGQMRLISTVLGGHT 253

Query: 273 SQERDQKALELITSFL 288
            + R+ ++ +L+T   
Sbjct: 254 YKGRETESKKLLTWGF 269


>gi|212712937|ref|ZP_03321065.1| hypothetical protein PROVALCAL_04035 [Providencia alcalifaciens DSM
           30120]
 gi|212684415|gb|EEB43943.1| hypothetical protein PROVALCAL_04035 [Providencia alcalifaciens DSM
           30120]
          Length = 409

 Score =  285 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 90/303 (29%), Positives = 155/303 (51%), Gaps = 20/303 (6%)

Query: 16  TYPYGSIYIQRNIQ--LMGKILFLSIIMISMASE------LHAKP---KYSSIVIDVNKN 64
            +P   +++ R  +   +   L +S    + A E      + A P     + I+ID N  
Sbjct: 4   VFPSRYVFLSRIARQTALASALIVSTANFANADEAFPNTSIPAVPDIDAAAYILIDYNSG 63

Query: 65  QMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSK 117
           ++      D+ R PASLTKMMT Y+I + ++S K+  N  + V   A        +  S 
Sbjct: 64  KVLAESNADQRRDPASLTKMMTSYVIGQAIKSGKIGANDMVTVGDDAWATGNPIFKGSSL 123

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           ++LK     +  Q    +  +S ND   A  ++++G +  F  LM+    K+G+QNT ++
Sbjct: 124 MFLKPGDRVSVSQLTRGINLQSGNDACVAMADYVAGDQANFVNLMNTYVTKLGLQNTHFQ 183

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHN 236
              GL    Q ++ARD A++G  L ++ P+ Y+ +  ++F + N   TN N LL  K   
Sbjct: 184 TVHGLDAAGQYSSARDMALIGQALIRDVPEEYEIYKEKEFTFNNIRQTNRNGLLWDKSLA 243

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE-KKTLKH 295
           +DGIKTG+T  +G+N+V S +  D  +++VVMG  +S+ RD ++ +L+T      +T+K 
Sbjct: 244 VDGIKTGHTDAAGYNLVASAKDGDMRLISVVMGGKSSKGRDAESKKLLTYGFRFYETVKP 303

Query: 296 QQT 298
            Q 
Sbjct: 304 LQA 306


>gi|17987097|ref|NP_539731.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase
           fraction C) [Brucella melitensis bv. 1 str. 16M]
 gi|225852669|ref|YP_002732902.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC
           23457]
 gi|256044826|ref|ZP_05447730.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256113731|ref|ZP_05454535.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
           str. Ether]
 gi|256263838|ref|ZP_05466370.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
           str. 63/9]
 gi|265991251|ref|ZP_06103808.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265995087|ref|ZP_06107644.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
           str. Ether]
 gi|17982757|gb|AAL51995.1| penicillin-binding protein 6 (d-alanyl-d-alanine carboxypeptidase
           fraction c) [Brucella melitensis bv. 1 str. 16M]
 gi|225641034|gb|ACO00948.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC
           23457]
 gi|262766200|gb|EEZ11989.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
           str. Ether]
 gi|263002035|gb|EEZ14610.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263093969|gb|EEZ17903.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
           str. 63/9]
 gi|326409190|gb|ADZ66255.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis M28]
          Length = 472

 Score =  285 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 114/312 (36%), Positives = 182/312 (58%), Gaps = 8/312 (2%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYI 88
           L+  +   S +     +      +Y++IV+D N  +       D  RYPASLTKMMTLY+
Sbjct: 21  LLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLYM 80

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           +FE + + +++ +T+IPVS  AA++ P+K+  +       E   LA+IT+SANDV+ A G
Sbjct: 81  LFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVG 140

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E++ GSE++FA +M+ +A+++GM+NT ++NASGL +  Q ++ARD AILG+ LR++FP+ 
Sbjct: 141 EYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPRE 200

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           + YFS   F +R + I  HN+LL ++  +DGIKTGYT  SG+N+V+S+      +VAVVM
Sbjct: 201 FAYFSRSSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVM 260

Query: 269 GMPTSQERDQKALELITSFL-------EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRT 321
           G  T   RD    +LI  +L           L   ++     ++S  L K+         
Sbjct: 261 GGNTGASRDAHMAQLIRKYLPMAARGRNNDALIAARSEAPQVVASIDLPKTKRAPVPVAR 320

Query: 322 YSQFKKIDAKAH 333
            +    I+A+  
Sbjct: 321 IAVEDIINAEIG 332


>gi|167766358|ref|ZP_02438411.1| hypothetical protein CLOSS21_00862 [Clostridium sp. SS2/1]
 gi|167711949|gb|EDS22528.1| hypothetical protein CLOSS21_00862 [Clostridium sp. SS2/1]
          Length = 399

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 93/325 (28%), Positives = 158/325 (48%), Gaps = 19/325 (5%)

Query: 26  RNIQLMGKILFLSIIMISMASEL----HAKP-----KYSSIVIDVNKNQMTGFKQ-DEPR 75
           + I L+  IL  S     MA E      A P       S++V++    ++   K  D+  
Sbjct: 5   KAILLVAAILVQSFYCPVMAREARFLETAAPVLDLSAKSAVVMEQESKEILFAKDKDKEL 64

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
            PAS+TK+M+L +IFE L+  K+ L   + VS+ AA+   S+++L+       +  I  +
Sbjct: 65  APASVTKIMSLLLIFEDLKQGKIKLTDTVTVSEHAASMGGSQVFLETGEKQQVQTLIKCV 124

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  SAND   A  E + GSE+ F   M+ KA+++GM++T ++NA GL  K  +T+A D A
Sbjct: 125 VISSANDAVVALAEHVCGSEEAFVSRMNKKARELGMKHTTFQNACGLDAKGHVTSAYDIA 184

Query: 196 ILGILLRKNFPQYYKYFSIRKFRY--------RNRIITNHNKLLNKMHNIDGIKTGYTRN 247
           ++   L + +P+ +KY  I             +   ++N NKL+ + H   G+KTG T  
Sbjct: 185 LMTRELAQRYPEVFKYTKIWMDTIIHKTKKGEKEFGLSNTNKLIRQYHGCTGMKTGSTGK 244

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSST 307
           +GF +  +       ++AVVMG  +S+ R + A  L+          H +T RK+ +   
Sbjct: 245 AGFCLSATATRNKIHMIAVVMGCESSKARIKDARTLLDYGFSNCQRIHSETTRKE-IGRI 303

Query: 308 SLKKSLMIKKLKRTYSQFKKIDAKA 332
            ++K    +   +       ID K 
Sbjct: 304 PVQKGQRSEVSCQEKVTADLIDIKT 328


>gi|269961828|ref|ZP_06176185.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi 1DA3]
 gi|269833406|gb|EEZ87508.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi 1DA3]
          Length = 389

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 78/270 (28%), Positives = 139/270 (51%), Gaps = 8/270 (2%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKYS---SIVIDVNKNQMTGFKQDEPRY-PASLTK 82
           N  L   +  +S    +  + +   P+ S    +++D +   +   +  + R  PASLTK
Sbjct: 8   NATLATTLTAVSAFSFAAPTVVPNAPELSSRGYVLMDYHTGTVLVERDADKRLNPASLTK 67

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRS 139
           +MT Y+  + ++S  + L+ ++ +S+ A  +N    SK++++  T  +       LI +S
Sbjct: 68  LMTAYVAGQEVKSGNISLDDEVVISRNAWAKNFPDSSKMFIEVGTSVSLSDLYRGLIVQS 127

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND S A  E ++GSE  F  LM++ A ++G+ N+ + N  GL      +T RD A LG 
Sbjct: 128 GNDASVAIAEHVAGSEAGFVGLMNSWANQLGLSNSAFTNPHGLDSDGLYSTPRDIATLGR 187

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY 258
            + ++ P  Y  +S   F Y      N N LL  +  ++DG+KTGYT  +G+++ TS   
Sbjct: 188 AIIRDLPDIYPLYSETSFTYNGITQYNRNGLLRDRSMSVDGMKTGYTSGAGYSLATSATN 247

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFL 288
            D  +VAVVMG  +   R+ ++ +L++   
Sbjct: 248 GDMRLVAVVMGAKSPSVRESESKQLLSYGF 277


>gi|238790457|ref|ZP_04634227.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia frederiksenii
           ATCC 33641]
 gi|238721483|gb|EEQ13153.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia frederiksenii
           ATCC 33641]
          Length = 383

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 76/256 (29%), Positives = 133/256 (51%), Gaps = 11/256 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   + ++ID N  ++      D  R PASLTKMMT Y+I + +++ K+ 
Sbjct: 17  MIPGVPQIDAE---AYVLIDYNSGKVLAEMNADVRRNPASLTKMMTSYVIGQAIKAGKIG 73

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V K A        +  S ++LK        +    +  +S ND   A  ++++G
Sbjct: 74  PEDMVTVGKDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAG 133

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+N    +G++NT +K   GL  + Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 134 SQDSFVNLMNNYVNALGLKNTHFKTVHGLDAEGQFSSARDMALIGQALIRDVPDEYAIYK 193

Query: 214 IRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F + N   TN N LL     N+DGIKTG+T  +G+N+V S       +++ V+G  T
Sbjct: 194 EKEFTFNNIRQTNRNGLLWDTSLNVDGIKTGHTDAAGYNLVASATDGQMRLISAVLGGHT 253

Query: 273 SQERDQKALELITSFL 288
            + R+ ++ +L+T   
Sbjct: 254 FKGRETESKKLLTWGF 269


>gi|220935870|ref|YP_002514769.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219997180|gb|ACL73782.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 391

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 86/271 (31%), Positives = 151/271 (55%), Gaps = 14/271 (5%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
           +G+ L  S + +   S+L ++   + +++D     +   +  DE   PASLTK+MT Y++
Sbjct: 18  LGQALAQSTVRVPPPSDLESR---NYLIMDHLSGMVLAERAADERVEPASLTKLMTAYLV 74

Query: 90  FEYLQSKKLHLNTQIPVSKTAAT---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           F+ ++   + L+ ++ +S+ A     Q  S+++++       +  +  LI +S ND S A
Sbjct: 75  FQEIERGTISLDDEVRISERAWRTGMQGASRMFIEVNNRVRLQDLLRGLIIQSGNDASVA 134

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-QITTARDQAILGILLRKNF 205
             E + G+E  F  LM+ +A+ +GM NT + N+ GL  +  Q T+ARD A+L   L ++F
Sbjct: 135 LAEHVGGTEGAFVDLMNAQARALGMVNTHFTNSHGLPTEEAQYTSARDMALLASALIRDF 194

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           PQ+Y Y+S R F +     +N N LL +   +DG+KTG+TR SG+N+V+S   +   +VA
Sbjct: 195 PQHYGYYSERNFTFNGITQSNRNLLLWRDSQVDGLKTGWTRTSGYNLVSSREQEGMRLVA 254

Query: 266 VVMG--MPTSQE----RDQKALELITSFLEK 290
           VVMG   P+ Q+    R  ++  L +    +
Sbjct: 255 VVMGIDAPSHQQGGIKRANESQALYSWGFRQ 285


>gi|307246518|ref|ZP_07528590.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307255504|ref|ZP_07537310.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259955|ref|ZP_07541668.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307262081|ref|ZP_07543735.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306852581|gb|EFM84814.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306861546|gb|EFM93534.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306865983|gb|EFM97858.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306868260|gb|EFN00083.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 392

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 83/291 (28%), Positives = 154/291 (52%), Gaps = 14/291 (4%)

Query: 24  IQRNIQLMGKILFLSIIMISMAS-------ELHAKPKYSSIVIDVNKNQMTGF-KQDEPR 75
           ++R +     +  L++   ++A                + I++D N   +      D+ +
Sbjct: 1   MKRTLLKSVSLCALAVSQFAIADANVDFGISAPQLNAQTYILMDYNSGNVLASLNPDQRQ 60

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGI 132
           YPASLTKMMT Y++ + L+  K+  +  + V++ +  Q     S ++L   T  +    +
Sbjct: 61  YPASLTKMMTSYVVGDALKQGKVKNSDMVTVTENSWAQKFPGSSLMFLDLNTQVSVADLM 120

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             LI  S ND + A  E  SGS++ F   M+   ++ G++NT +    GL D NQ ++AR
Sbjct: 121 RGLIIVSGNDAAVALAEHTSGSQQAFIDQMNKFGQQFGLKNTNFTTVHGLDDPNQYSSAR 180

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYR-NRIITNHNKLLN-KMHNIDGIKTGYTRNSGF 250
           D AI+G+ + ++ P+ YK ++ ++F+Y   +   N N LL  K  N+DG+KTG+T  +G+
Sbjct: 181 DMAIIGVHVIRDQPEEYKIYAEKEFKYNIKKAQPNRNGLLWDKTINVDGMKTGHTSQAGY 240

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHR 300
           N+V S    +  +++VVMG+PT + R+ ++ +L+       +T+K  Q  +
Sbjct: 241 NLVASATNNNTRLISVVMGVPTYKGREVESKKLLQWGFANFETVKSLQAGQ 291


>gi|114561878|ref|YP_749391.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella frigidimarina
           NCIMB 400]
 gi|114333171|gb|ABI70553.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella frigidimarina
           NCIMB 400]
          Length = 403

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 81/256 (31%), Positives = 140/256 (54%), Gaps = 8/256 (3%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSK 96
           + ++   A  + AK   + +++D N  ++   +   E   PASLTKMMT Y+I   ++  
Sbjct: 38  APMVTPDAPSVAAK---AYVLMDYNSGRVIAEENAYESLNPASLTKMMTSYVIGHEIRVG 94

Query: 97  KLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            + L+  + ++K A  +N    SK++++             +I +S ND   A  E I+G
Sbjct: 95  NISLDDDVAITKNAWAKNFPDSSKMFIEVGKTVKVHDLNRGIIIQSGNDACVAMAEHIAG 154

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           +E  F  LM++ AK++GM+++ ++N+ GL  +N  TTA D AILG  L ++ P+ YK +S
Sbjct: 155 TEGAFVDLMNSWAKQLGMKDSYFENSHGLDSENHKTTAYDMAILGAALIRDVPEEYKVYS 214

Query: 214 IRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            + F Y      N N LL  K  N+DGIKTG+T  +G+N+V+S   +   +++VVMG  +
Sbjct: 215 EKSFTYNGIKQYNRNGLLWDKSLNVDGIKTGHTSGAGYNLVSSGTSEGMRLISVVMGTSS 274

Query: 273 SQERDQKALELITSFL 288
              R  ++ +L+    
Sbjct: 275 ESARKAESKKLLNYGF 290


>gi|260566296|ref|ZP_05836766.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40]
 gi|260155814|gb|EEW90894.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40]
          Length = 461

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 114/312 (36%), Positives = 182/312 (58%), Gaps = 8/312 (2%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYI 88
           L+  +   S +     +      +Y++IV+D N  +       D  RYPASLTKMMTLY+
Sbjct: 10  LLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLYM 69

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           +FE + + +++ +T+IPVS  AA++ P+K+  +       E   LA+IT+SANDV+ A G
Sbjct: 70  LFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVG 129

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E++ GSE++FA +M+ +A+++GM+NT ++NASGL +  Q ++ARD AILG+ LR++FP+ 
Sbjct: 130 EYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPRE 189

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           + YFS   F +R + I  HN+LL ++  +DGIKTGYT  SG+N+V+S+      +VAVVM
Sbjct: 190 FAYFSRSSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVM 249

Query: 269 GMPTSQERDQKALELITSFL-------EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRT 321
           G  T   RD    +LI  +L           L   ++     ++S  L K+         
Sbjct: 250 GGNTGASRDAHMAQLIRKYLPMAARGRNNDALIAARSEAPQVVASIDLPKAKRAPVPVAR 309

Query: 322 YSQFKKIDAKAH 333
            +    I+A+  
Sbjct: 310 IAVEDIINAEIG 321


>gi|28901449|ref|NP_801104.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260363002|ref|ZP_05775871.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus K5030]
 gi|260880289|ref|ZP_05892644.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus AN-5034]
 gi|260896672|ref|ZP_05905168.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus Peru-466]
 gi|28809996|dbj|BAC62937.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308085410|gb|EFO35105.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus Peru-466]
 gi|308091912|gb|EFO41607.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus AN-5034]
 gi|308112244|gb|EFO49784.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus K5030]
          Length = 385

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 77/288 (26%), Positives = 141/288 (48%), Gaps = 13/288 (4%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEP-RYPASLT 81
            + L    +   +I +   + +   P        +++D     +           PASLT
Sbjct: 2   KVSLARWTIVTCLISVPTFAVVTPNPPQLQAKGYVLMDFQSGAIIAEHNGRAGLAPASLT 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITR 138
           K+MT Y++ + +++ +L  +  + VS+ A +      SK+++K K   +    +  +I +
Sbjct: 62  KLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAKFPGSSKMFIKPKDEISVANLMRGVIIQ 121

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND   A  E ++GSE+ F  LM+  A+K+G+Q+T + N+ GL      T+  D A L 
Sbjct: 122 SGNDACVALAEHVAGSERGFVALMNGWAEKLGLQDTYFVNSHGLDSDGIQTSPTDMAKLM 181

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLR 257
             +  + P  Y  +S + F++ +    N NKLL     ++DG KTGYT N+G+++V+S +
Sbjct: 182 QSIISDVPDVYALYSEKVFKWNDITQYNRNKLLWDNSIDVDGGKTGYTSNAGYSLVSSAK 241

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFL----EKKTLKHQQTHRK 301
                +++VVMG P+ Q R  ++  L++        K+  K  Q   K
Sbjct: 242 EGRMRLISVVMGTPSKQARISQSKNLLSYGFRFYDTKQVAKQGQVESK 289


>gi|254284899|ref|ZP_04959865.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae AM-19226]
 gi|150424902|gb|EDN16679.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae AM-19226]
          Length = 389

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 81/324 (25%), Positives = 154/324 (47%), Gaps = 17/324 (5%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASL 80
             ++ ++  M  +  L    +++  E         ++ID +  ++           PASL
Sbjct: 6   FLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPASL 65

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALIT 137
           TK+MT Y+  + ++   +H + Q+ +S  A  +   + SK++++  TY         LI 
Sbjct: 66  TKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLIV 125

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL +    +T  D A+L
Sbjct: 126 QSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIALL 185

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
           G  + ++ P+ Y  +S   F Y      N N LL  +  N+DG+KTGYT  +G+++ +S 
Sbjct: 186 GRAMIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASSA 245

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK----------TLKHQQTHRKDNLSS 306
              +  +++VVMG  + + R+ ++ +L++                 +++Q+    D    
Sbjct: 246 TSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDSVIQNQRLWYGDKNEV 305

Query: 307 TSLKKSLMIKKLKRTYSQFKKIDA 330
                  +   L R  S  KK++A
Sbjct: 306 ALGSADTVYLTLPR--SDVKKLNA 327


>gi|145298088|ref|YP_001140929.1| Serine-type D-Ala-D-Ala carboxypeptidase [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142850860|gb|ABO89181.1| Serine-type D-Ala-D-Ala carboxypeptidase [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 396

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 83/258 (32%), Positives = 135/258 (52%), Gaps = 9/258 (3%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQS 95
            + +++  A E+ AK     I+ID    Q+      DE   PASLTKMMT YII   L  
Sbjct: 29  AAPMVVPAAPEISAKAH---ILIDYYSGQVLAEANADERLPPASLTKMMTSYIIGHELLE 85

Query: 96  KKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
             +     + +SK A ++N    SK++++     + +     +I +S ND   A  EF++
Sbjct: 86  GNIKNTDMVTISKNAWSKNYTDSSKMFIEVGKQVSVDDLNKGIIIQSGNDACVAMAEFLA 145

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           GS   FA LM+  + K+GM++T +KN  GL ++   +TARD A LG  L  + P+ YK +
Sbjct: 146 GSTDSFASLMNAWSAKLGMKDTQFKNPHGLDEEGHYSTARDMARLGQALIHDQPEEYKIY 205

Query: 213 SIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYK-DDPIVAVVMGM 270
           + + F +      N N+LL  +   +DGIKTG+    G+N+V+S        ++AVV+G 
Sbjct: 206 AQKSFVFNGITQHNRNRLLWDQSLQVDGIKTGHVSQVGYNLVSSATNNEGMRLIAVVLGA 265

Query: 271 PTSQERDQKALELITSFL 288
            +   R  ++ +L+T   
Sbjct: 266 SSEGSRAAESKKLLTYGF 283


>gi|170747224|ref|YP_001753484.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653746|gb|ACB22801.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 489

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 111/282 (39%), Positives = 171/282 (60%), Gaps = 2/282 (0%)

Query: 51  KPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
            P Y+++V+DV   +      +D  R+PAS+TK+MTLY++FE ++  K  L++ + +S  
Sbjct: 49  NPPYAAMVVDVKSGKTLHAVNEDALRHPASITKVMTLYLLFEQMERGKFALDSDLTISAH 108

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           AA Q PSKL L+     + E  I A++T+SANDV+ A GE I+GSE++FA +M+ KA  +
Sbjct: 109 AAAQAPSKLGLRPGQTISVEDAIKAIVTKSANDVACAIGENIAGSEERFAQMMTAKAHAL 168

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM  T Y NASGL D  Q+TTARD  +L   ++  FP YY+YF  R F +R R+I NHN 
Sbjct: 169 GMSRTHYANASGLPDPEQLTTARDLTVLARAIQDRFPHYYRYFQTRSFAFRGRVIGNHNH 228

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           LL  +  +DGIKTGYTR+SGFN++T+ + +   IVA+V+G  +   RD+   +L+ S L 
Sbjct: 229 LLGNVQGVDGIKTGYTRDSGFNLMTAAKSEGRQIVAIVLGGKSGAGRDRIMADLVRSSLP 288

Query: 290 KKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
           +      +        +   + +++   + RT +Q    D +
Sbjct: 289 RA-YAGARISAPVTEVAERARPAVVADAVSRTRTQVASADDE 329


>gi|190575883|ref|YP_001973728.1| putative penicillin-binding protein [Stenotrophomonas maltophilia
           K279a]
 gi|190013805|emb|CAQ47442.1| putative penicillin-binding protein precursor [Stenotrophomonas
           maltophilia K279a]
          Length = 404

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 72/240 (30%), Positives = 131/240 (54%), Gaps = 6/240 (2%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           + +++D    Q+   +   E   PAS+TK+MT Y+I   +++ K+  + Q+ +S+ A  +
Sbjct: 54  AWVLMDYATGQVLAGENIHEQLAPASITKVMTSYVIAAEVKNGKVRADDQVMMSERAWRE 113

Query: 114 NP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                  S            E     +  +S ND + A  E ++GSE+ FA LM++ A K
Sbjct: 114 GGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAK 173

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           IGM+++ + NA GL  +   +TA D A+LG  + +++P+ Y Y  I++F+  N    N N
Sbjct: 174 IGMKDSHFVNAHGLTAEGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGNIKQPNRN 233

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            LL +  ++DGIKTG+T  +G+ +++S +  D  ++AVV+G  + ++R   +L L+    
Sbjct: 234 LLLWRDGSVDGIKTGHTSEAGYCLMSSAQRGDQRLIAVVLGGASEKQRADDSLALLNWGF 293


>gi|284007887|emb|CBA73817.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase)
           [Arsenophonus nasoniae]
          Length = 402

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 73/272 (26%), Positives = 135/272 (49%), Gaps = 12/272 (4%)

Query: 33  KILFLSIIMISM-ASELHAKPK---YSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLY 87
            +LF+ +  I++ A      P+    + +++D +  ++      DE   PASLTK+MT Y
Sbjct: 17  SLLFIFVFPINVYADGPQVTPQLDVKAYVLMDYHSGKVLTANNPDERLDPASLTKIMTSY 76

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQN------PSKLYLKEKTYFTTEQGILALITRSAN 141
           ++ + +++ K+ +N  + V + A           S ++LK     +       ++ +S N
Sbjct: 77  VVGQAIKAGKISVNDLVTVGEDAWATGNPVLHGSSLMFLKPGDRVSVLDLNRGIVIQSGN 136

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D   A  ++++GS+  F  LM+     +G++NT +K   GL  + Q +TA D AIL   L
Sbjct: 137 DACIALADYVAGSQTVFVDLMNQYVTSLGLKNTHFKTVHGLDSEGQFSTAHDMAILTQAL 196

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
            ++ P  Y     + F Y      N N+LL  K   +DG+KTG+T  +G+N++TS     
Sbjct: 197 IRDVPDEYLLHGEKVFTYNKIKQFNRNRLLWSKNLQVDGVKTGHTSGAGYNLITSATNGP 256

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
             ++AVV+G  + + R  ++ +L+       T
Sbjct: 257 MRLIAVVLGAGSDRIRFTESEKLLNWGFRFFT 288


>gi|153803461|ref|ZP_01958047.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MZO-3]
 gi|124121011|gb|EAY39754.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MZO-3]
          Length = 389

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 80/324 (24%), Positives = 154/324 (47%), Gaps = 17/324 (5%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASL 80
             ++ ++  M  +  L    +++  E         ++ID +  ++           PASL
Sbjct: 6   FLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPASL 65

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALIT 137
           TK+MT Y+  + ++   +H + ++ +S  A  +   + SK++++  TY         LI 
Sbjct: 66  TKLMTSYVAGQEMKRGNIHADDKVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLIV 125

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL +    +T  D A+L
Sbjct: 126 QSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIALL 185

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
           G  + ++ P+ Y  +S   F Y      N N LL  +  N+DG+KTGYT  +G+++ +S 
Sbjct: 186 GRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLXSSA 245

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK----------TLKHQQTHRKDNLSS 306
              +  +++VVMG  + + R+ ++ +L++                 +++Q+    D    
Sbjct: 246 TSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDSVIQNQRLWYGDKNEV 305

Query: 307 TSLKKSLMIKKLKRTYSQFKKIDA 330
                  +   L R  S  KK++A
Sbjct: 306 ALGSADTVYLTLPR--SDVKKLNA 327


>gi|319796225|ref|YP_004157865.1| beta-lactamase [Variovorax paradoxus EPS]
 gi|315598688|gb|ADU39754.1| Beta-lactamase [Variovorax paradoxus EPS]
          Length = 389

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 93/334 (27%), Positives = 168/334 (50%), Gaps = 26/334 (7%)

Query: 24  IQRNIQLMGKILFLSIIMIS--MASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYP 77
           + R    +  ++  +   +    A+++ A P+ ++   +++DV  NQ+   K  D P  P
Sbjct: 1   MNRFFNALRALVLTAAASVGVIAAAQVPAPPEVAARSYLLLDVTANQILAQKDIDSPVEP 60

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+M+ YI+F+ L++KK+ L    PVS  A     S++++  K     E  I  LI 
Sbjct: 61  ASLTKLMSAYIVFDALRAKKITLTQTFPVSPRAWKMPGSRMFIDPKMQVPVEDLIKGLIV 120

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND + A  E + G+ + F  LM+ +AK +GM+NT YKN  GL      TTARD +IL
Sbjct: 121 QSGNDATVALAEGVGGTVEHFVELMNAQAKALGMKNTSYKNPEGLTAPGHTTTARDLSIL 180

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRII---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
              L ++FP+  KY++I+K+RY        TN N LL +   +DG+KTG+T  +G+ ++ 
Sbjct: 181 ATRLVRDFPEEAKYYAIKKYRYPGTPSTNDTNRNLLLFRDPTVDGLKTGHTEAAGYCMIA 240

Query: 255 SLRYK------DDPIVAVVMGMPTSQERDQKALELITSFLE----KKTLKHQQ------- 297
           + +           ++++V+G  +   R  ++ +L+          +     Q       
Sbjct: 241 TAKRDFPNLTGGRRLLSIVLGASSETVRANESQKLLNWGYTAYDAVRLFDAGQPAATPAV 300

Query: 298 THRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
              K+N+      +++++     + S+ K   A+
Sbjct: 301 WKGKENVLKLGRPEAIVVAVPAGSASKIKTQVAR 334


>gi|260773924|ref|ZP_05882839.1| D-alanyl-D-alanine carboxypeptidase [Vibrio metschnikovii CIP
           69.14]
 gi|260610885|gb|EEX36089.1| D-alanyl-D-alanine carboxypeptidase [Vibrio metschnikovii CIP
           69.14]
          Length = 388

 Score =  285 bits (729), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 73/272 (26%), Positives = 136/272 (50%), Gaps = 9/272 (3%)

Query: 26  RNIQLMGKIL-FLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDE-PRYPASL 80
           ++I +    L F+ ++  +    +   P+ S+   +++D +   +           PASL
Sbjct: 5   KSIVVSATCLSFIPLVSDATPIVVPNPPQLSAKGYVLMDYHTGTVLVEHNAHNKLNPASL 64

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALIT 137
           TK+MT Y+  + ++   +  + Q+ +S+ A  +N    SK++++  T          LI 
Sbjct: 65  TKLMTSYVAGQEMKRGNISPDDQVVISQRAWARNFPDSSKMFIEVGTKVNMMDLYRGLIV 124

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E ++GSE  F  LM++ A  +G+ NT + N  GL      +T  D A L
Sbjct: 125 QSGNDASVAIAEHVAGSENAFVDLMNSWAATLGLTNTAFTNPHGLDSSGLYSTPYDIAKL 184

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
              + ++ P+ Y  +S   F Y      N N LL  +  N+DG+KTG+T  +GF++ TS 
Sbjct: 185 AQAIIRDLPEIYPLYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGFTSGAGFSLTTSA 244

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
              +  +++VVMG  +++ R+  + +L++   
Sbjct: 245 TNGNMRLISVVMGSNSAKGREADSKQLLSYGF 276


>gi|53729243|ref|ZP_00133773.2| COG1686: D-alanyl-D-alanine carboxypeptidase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126209060|ref|YP_001054285.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus
           pleuropneumoniae L20]
 gi|165977032|ref|YP_001652625.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|190150927|ref|YP_001969452.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303250838|ref|ZP_07337032.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|303253460|ref|ZP_07339602.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307248643|ref|ZP_07530657.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307250875|ref|ZP_07532803.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307253259|ref|ZP_07535133.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307257674|ref|ZP_07539433.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307264281|ref|ZP_07545870.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126097852|gb|ABN74680.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165877133|gb|ABY70181.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|189916058|gb|ACE62310.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302647704|gb|EFL77918.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302650351|gb|EFL80513.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306854854|gb|EFM87043.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306857125|gb|EFM89253.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306859246|gb|EFM91285.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306863849|gb|EFM95773.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306870345|gb|EFN02100.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 392

 Score =  285 bits (729), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 85/291 (29%), Positives = 153/291 (52%), Gaps = 21/291 (7%)

Query: 31  MGKILFLSIIMISMASELHAKP--------------KYSSIVIDVNKNQMTGF-KQDEPR 75
           M + L  S+ + ++A    A                  + I++D N   +      D+ +
Sbjct: 1   MKRTLLKSVSLCALAVSQFATADANVDFGISAPQLNAQTYILMDYNSGNVLASLNPDQRQ 60

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGI 132
           YPASLTKMMT Y++ + L+  K+  +  + V++ +  Q     S ++L   T  +    +
Sbjct: 61  YPASLTKMMTSYVVGDALKQGKVKNSDMVTVTENSWAQKFPGSSLMFLDLNTQVSVADLM 120

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             LI  S ND + A  E  SGS++ F   M+   ++ G++NT +    GL D NQ ++AR
Sbjct: 121 RGLIIVSGNDAAVALAEHTSGSQQAFIDQMNKFGQQFGLKNTNFTTVHGLDDPNQYSSAR 180

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYR-NRIITNHNKLLN-KMHNIDGIKTGYTRNSGF 250
           D AI+G+ + ++ P+ YK ++ ++F+Y   +   N N LL  K  N+DG+KTG+T  +G+
Sbjct: 181 DMAIIGVHVIRDQPEEYKIYAEKEFKYNIKKAQPNRNGLLWDKTINVDGMKTGHTSQAGY 240

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHR 300
           N+V S    +  +++VVMG+PT + R+ ++ +L+       +T+K  Q  +
Sbjct: 241 NLVASATNNNTRLISVVMGVPTYKGREVESKKLLQWGFANFETVKSLQAGQ 291


>gi|110633724|ref|YP_673932.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium
           sp. BNC1]
 gi|110284708|gb|ABG62767.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Chelativorans
           sp. BNC1]
          Length = 465

 Score =  285 bits (729), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 122/275 (44%), Positives = 172/275 (62%), Gaps = 1/275 (0%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTK 82
           +++   +    +     ++S+A+   A PKY+ IVID    Q+      DE RYPASLTK
Sbjct: 30  LRKVTNIAVLAVATGAFVLSLAASAAANPKYAGIVIDAKTGQVLYEDSADELRYPASLTK 89

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           MMTLY++FE + + ++  +T I  SK A+ + P+KL +      T EQ ILALITRSAND
Sbjct: 90  MMTLYLVFESMAAGRISKSTSITFSKNASAEPPTKLGVPAGKSITVEQAILALITRSAND 149

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            +TA  E + GSE+ FA +M+ KA+++GM++T ++NA GL +  Q TTARD A LGI LR
Sbjct: 150 AATAIAEKLGGSEESFARMMTAKARQLGMKSTTFRNAHGLPNNAQKTTARDMARLGIALR 209

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           +++PQYY YFS R F +  + I  HN LL ++   DGIKTGY   SGFN+V+S+      
Sbjct: 210 EHYPQYYDYFSTRSFVFSGKKINGHNNLLGRVKGADGIKTGYINASGFNLVSSVSTGGRQ 269

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQ 297
           IVAVVMG  T++ RD   + LI  +L K +    Q
Sbjct: 270 IVAVVMGGKTARSRDAHMVSLIERYLPKASTGRGQ 304


>gi|153833629|ref|ZP_01986296.1| penicillin-binding protein 5 [Vibrio harveyi HY01]
 gi|156977638|ref|YP_001448544.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi ATCC BAA-1116]
 gi|148870027|gb|EDL68982.1| penicillin-binding protein 5 [Vibrio harveyi HY01]
 gi|156529232|gb|ABU74317.1| hypothetical protein VIBHAR_06426 [Vibrio harveyi ATCC BAA-1116]
          Length = 389

 Score =  285 bits (729), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 78/270 (28%), Positives = 139/270 (51%), Gaps = 8/270 (2%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKYS---SIVIDVNKNQMTGFKQDEPRY-PASLTK 82
           N  L   +  +S    +  + +   P+ S    +++D +   +   +  + R  PASLTK
Sbjct: 8   NATLATTLTAVSAFSFAAPTVVPNAPELSSRGYVLMDYHTGTVLVERDADKRLNPASLTK 67

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRS 139
           +MT Y+  + ++S  + L+ ++ +S+ A  +N    SK++++  T  +       LI +S
Sbjct: 68  LMTAYVAGQEVKSGNISLDDEVVISRNAWAKNFPDSSKMFIEVGTSVSLSDLYRGLIVQS 127

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND S A  E ++GSE  F  LM++ A ++G+ N+ + N  GL      +T RD A LG 
Sbjct: 128 GNDASVAIAEHVAGSEAGFVGLMNSWANQLGLSNSAFTNPHGLDSDGLYSTPRDIATLGR 187

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY 258
            + ++ P  Y  +S   F Y      N N LL  +  ++DG+KTGYT  +G+++ TS   
Sbjct: 188 AIIRDLPDIYPLYSETSFTYNGITQYNRNGLLRDRSMSVDGMKTGYTSGAGYSLATSATN 247

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFL 288
            D  +VAVVMG  +   R+ ++ +L++   
Sbjct: 248 GDMRLVAVVMGAKSPSVRESESKQLLSYGF 277


>gi|145636767|ref|ZP_01792433.1| hypothetical protein CGSHiHH_06620 [Haemophilus influenzae PittHH]
 gi|145270065|gb|EDK10002.1| hypothetical protein CGSHiHH_06620 [Haemophilus influenzae PittHH]
          Length = 393

 Score =  285 bits (729), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 87/287 (30%), Positives = 150/287 (52%), Gaps = 18/287 (6%)

Query: 33  KILFLSIIMISMASELHA--------KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASL 80
           KI FLS  +   A  + A         P+ ++   +++D N   +      D+ +YPASL
Sbjct: 7   KIAFLSSFVALSAFSVSAEDMQFGITPPQITAQTYVLMDYNSGAILTALNPDQRQYPASL 66

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALIT 137
           TKMMT Y++   L+  K+H    + + ++A  +N    SK++L   T  +       +I 
Sbjct: 67  TKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIV 126

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND + A  E ISG+   F   M+   ++ G++NT +    GL D NQ ++ARD AI+
Sbjct: 127 VSGNDATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAII 186

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
           G  + ++ P+ YK +S + F +      N N LL  K  N+DG+KTG+T  +G+N+V S 
Sbjct: 187 GAHIIRDLPEEYKIYSEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASA 246

Query: 257 -RYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHRK 301
               +  +++VVMG+PT + R+ ++ +L+       +T K  +  ++
Sbjct: 247 TTSNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKE 293


>gi|300022145|ref|YP_003754756.1| serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299523966|gb|ADJ22435.1| Serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 583

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 109/293 (37%), Positives = 161/293 (54%), Gaps = 14/293 (4%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLY 87
                +L L+      A    A  K+++ V+DVN   +      D  R+PASLTKMMTLY
Sbjct: 5   AFAFALLCLAFSGAVPARAAAAPQKHAAFVLDVNSGAVLHNDDGDAIRHPASLTKMMTLY 64

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + FE ++S +L ++  I +S  AA   PSKL LK     +    I A++T+SAND++ A 
Sbjct: 65  LTFELIESSRLKMSDMITISDRAANAAPSKLDLKPGAQISVADSIKAVVTKSANDIAVAL 124

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E I G+E  F  LM+ +A+ +GM  T ++N SGL D + ++TA D AIL + L  +FP 
Sbjct: 125 AEKIGGTEANFVRLMNTRARDLGMTKTHFENPSGLPDDDHVSTAHDMAILALRLMDDFPA 184

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           +Y+ FS R F YR +   NHN +LN    +DGIKTGYTR SGFN+VTS+      +V VV
Sbjct: 185 HYQVFSTRTFAYRGKSYRNHNTMLNTFQGVDGIKTGYTRASGFNLVTSVHRGGRHLVGVV 244

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKR 320
            G  T+  R+ +   L+T    + +             +   +K +++ KLK 
Sbjct: 245 FGGSTAAARNAEMRVLLTKAFTRAS-------------TAKTRKPMLVAKLKG 284


>gi|23502050|ref|NP_698177.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330]
 gi|23348005|gb|AAN30092.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330]
          Length = 472

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 114/312 (36%), Positives = 182/312 (58%), Gaps = 8/312 (2%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYI 88
           L+  +   S +     +      +Y++IV+D N  +       D  RYPASLTKMMTLY+
Sbjct: 21  LLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLYM 80

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           +FE + + +++ +T+IPVS  AA++ P+K+  +       E   LA+IT+SANDV+ A G
Sbjct: 81  LFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVG 140

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E++ GSE++FA +M+ +A+++GM+NT ++NASGL +  Q ++ARD AILG+ LR++FP+ 
Sbjct: 141 EYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPRE 200

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           + YFS   F +R + I  HN+LL ++  +DGIKTGYT  SG+N+V+S+      +VAVVM
Sbjct: 201 FAYFSRSSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVM 260

Query: 269 GMPTSQERDQKALELITSFL-------EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRT 321
           G  T   RD    +LI  +L           L   ++     ++S  L K+         
Sbjct: 261 GGNTGASRDAHMAQLIRKYLPMAARGRNNDALIAARSEAPQVVASIDLPKAKRAPVPVAR 320

Query: 322 YSQFKKIDAKAH 333
            +    I+A+  
Sbjct: 321 IAVEDIINAEIG 332


>gi|269965808|ref|ZP_06179903.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B]
 gi|269829543|gb|EEZ83782.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B]
          Length = 385

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 142/289 (49%), Gaps = 11/289 (3%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEP-RYPASLT 81
            + L    +   +I +   + +   P        +++D     +           PASLT
Sbjct: 2   KVSLARWTIVTCLISVPTFAVVTPNPPQLQAKGYVLMDFQSGAIIAEHNGRAGLAPASLT 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITR 138
           K+MT Y++ + +++ +L  +  + VS+ A +      SK+++K K   +    +  +I +
Sbjct: 62  KLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAKFPGSSKMFIKPKDEISVANLMRGVIIQ 121

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND   A  E ++GSE+ F  LM+  A+K+G+Q+T + N+ GL      T+  D A L 
Sbjct: 122 SGNDACVALAEHVAGSERGFVALMNGWAEKLGLQDTYFVNSHGLDSDGIQTSPTDMAKLM 181

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLR 257
             +  + P  Y  +S + F++ +    N NKLL     ++DG KTGYT N+G+++V+S +
Sbjct: 182 QSIISDVPDVYALYSEKVFKWNDITQYNRNKLLWDNSIDVDGGKTGYTSNAGYSLVSSAK 241

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSS 306
                +++VVMG P+ Q R  ++  L++        K  Q  +K  + S
Sbjct: 242 EGRMRLISVVMGTPSKQARISQSKNLLSYGFRFYNTK--QVAKKGEVES 288


>gi|261405987|ref|YP_003242228.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp.
           Y412MC10]
 gi|261282450|gb|ACX64421.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp.
           Y412MC10]
          Length = 396

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 86/333 (25%), Positives = 154/333 (46%), Gaps = 27/333 (8%)

Query: 29  QLMGKILFLSIIMISMA----------------SELHAKPKYSSIVIDVNKNQMTGFKQ- 71
            L+   L L++ + S A                 E  A    S+I++D +   +   K  
Sbjct: 4   ALIAGFLVLAVGLSSAAVPSYAEENSKPGGGSSQEELAPSARSAILLDADTGTIIYEKNS 63

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
            +   PAS+TK+MT+ +  E +   +L    ++  S+ AA+   S+++L+     T ++ 
Sbjct: 64  HDKLPPASITKVMTMLLTMEAIDEGQLKWTDKVRTSEYAASMGGSQIFLEPGEEMTVDEM 123

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +   S ND S A  E I+GSE+ F  +M+ KA ++GM++T + N +GL  +N  T+A
Sbjct: 124 LKGIAMASGNDASVAMAEKIAGSEEGFVKMMNEKAAELGMKDTHFVNCNGLPAENHYTSA 183

Query: 192 RDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
            D A++   L K + Q  KY       +RK   +   + N NKL+      DG+KTGYT 
Sbjct: 184 HDIAVMSRELLK-YDQITKYTGAYQDYLRKDSEKPFWLVNTNKLVRFYTGADGLKTGYTS 242

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSS 306
            + F +  + +      VAVVMG P ++ R+ +   +      + T+ H      + L  
Sbjct: 243 EAKFCLSATAKRDGLRAVAVVMGAPDTKTRNNEVSRMFDYAFSQYTM-HSIYKPGEVLGI 301

Query: 307 TSLKKSLMIK---KLKRTYSQFKKIDAKAHSTQ 336
             ++K  + +   + ++ YS   K   K    +
Sbjct: 302 VKVQKGNVPEISIQAEKDYSVLVKKGVKNPDIR 334


>gi|332977441|gb|EGK14217.1| serine-type D-Ala-D-Ala carboxypeptidase [Desmospora sp. 8437]
          Length = 395

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 151/292 (51%), Gaps = 9/292 (3%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
            A +  A    S++++D +   +   K   E   PAS+TK+MT+ ++ E L+  ++    
Sbjct: 25  AAEDGLAPSSKSAVLVDADTGTVLYEKNSREKLPPASITKIMTMLLVMEALEKGQISYED 84

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           ++  S+ A++   S+++L+       E  + A+   SAND S A  E ++G+E++F  +M
Sbjct: 85  RVRTSEYASSMGGSQIFLETGEVMKLEDLLKAVAVGSANDASVALAEHLAGTEERFVEMM 144

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI-----RKF 217
           + +A+++GM++T ++N +GL   +  +TARD AI+   L K   +  ++        RK 
Sbjct: 145 NRRAEELGMKDTRFQNPNGLPASDHYSTARDIAIMSRELLK-HREITRFTKTYEDYLRKE 203

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
             +   + N NKL+     +DG+KTG+TR +GF +  + + +D   +AVVMG P  + R+
Sbjct: 204 SKKPFWLVNTNKLVKFYEGLDGLKTGFTREAGFCLAATAKRRDLRAIAVVMGEPDVKARN 263

Query: 278 QKALELITSFLEKKT--LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
           ++   ++     +    + ++       L     +KS++  +  + +S   K
Sbjct: 264 REITRMLDFAFNQYANRVIYKPGQLIGKLQVDKGEKSMIEVRSPQQFSVLMK 315


>gi|296133162|ref|YP_003640409.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola sp. JR]
 gi|296031740|gb|ADG82508.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola potens JR]
          Length = 389

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 145/279 (51%), Gaps = 13/279 (4%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKP---------KYSSIVIDVNKNQMTGFKQ-DEP 74
            +  +L+G  L  ++I I   ++  A P           S+I+ID    ++   K  D  
Sbjct: 3   CKLKKLIGLFLLTTMITILFPTQGFAAPEQQPLLETTAESAILIDAVTGKVLFEKAADVE 62

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
           R PAS+TK+MTL +  E L   K+ L+ ++  S+ A+    S++YL+     +  + +++
Sbjct: 63  RPPASVTKVMTLLVALEQLAKGKISLSDKVVTSENASGMGGSQVYLEPNEELSMREMLIS 122

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +   SAND   A  E I+GS + +  +M++KAK++G+++T + NA GL  +   T+ARD 
Sbjct: 123 IAVGSANDACVAVAEHIAGSHEAYVKMMNDKAKELGLKHTHFANAYGLPAEGHYTSARDL 182

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           A++     K +P + K  SI+++  R    ++ N NKLL      DG KTG+T  + + +
Sbjct: 183 AVMMREALK-YPLFSKLTSIKRYDLRGGEFVLWNTNKLLWWYDGCDGGKTGWTSEAKYCL 241

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
            ++ +     ++AVVM  P  +   ++++ L      + 
Sbjct: 242 ASTCKRNGLRLIAVVMATPEPRSHFRESMRLYNYGFARY 280


>gi|260899720|ref|ZP_05908115.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus AQ4037]
 gi|308106862|gb|EFO44402.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus AQ4037]
          Length = 385

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 74/278 (26%), Positives = 137/278 (49%), Gaps = 9/278 (3%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEP-RYPASLT 81
            + L    +   +I +   + +   P        +++D     +           PASLT
Sbjct: 2   KVSLARWTIVTCLISVPTFAVVTPNPPQLQAKGYVLMDFQSGAIIAEHNGRAGLAPASLT 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITR 138
           K+MT Y++ + +++ +L  +  + VS+ A +      SK+++K K   +    +  +I +
Sbjct: 62  KLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAKFPGSSKMFIKPKDEISVANLMRGVIIQ 121

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND   A  E ++GSE+ F  LM+  A+K+G+Q+T + N+ GL      T+  D A L 
Sbjct: 122 SGNDACVALAEHVAGSERGFVALMNGWAEKLGLQDTYFVNSHGLDSDGIQTSPTDMAKLM 181

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLR 257
             +  + P  Y  +S + F++ +    N NKLL     ++DG KTGYT N+G+++V+S +
Sbjct: 182 QSIISDVPDVYALYSEKVFKWNDITQYNRNKLLWDNSIDVDGGKTGYTSNAGYSLVSSAK 241

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKH 295
                +++VVMG P+ Q R  ++  L++        K 
Sbjct: 242 EGRMRLISVVMGTPSKQARISQSKNLLSYGFRFYDTKQ 279


>gi|332970912|gb|EGK09888.1| D-alanyl-D-alanine carboxypeptidase DacA [Psychrobacter sp.
           1501(2011)]
          Length = 412

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 90/278 (32%), Positives = 146/278 (52%), Gaps = 4/278 (1%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
            + I ++  L   IL +S   ++           + I++D +   +   K  D+P  PAS
Sbjct: 29  PLSIVKSFLLGSSILAVSSASLAATVPPPEMDNTAYILMDYDTGAILAEKNADQPLPPAS 88

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGILALI 136
           LTKMMT +II + L S +L  +  + +S+ A    T + S +Y+      +    +  +I
Sbjct: 89  LTKMMTSHIIEKKLMSGELKEDEPVIMSENAWCRGTSDQSCMYVPVHKSASVIDMLRGII 148

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E I+GSE+ FA LM+ +AK++GM NT + NA+G+ D+N   +ARD AI
Sbjct: 149 IQSGNDASKAMAEHIAGSEQAFAQLMNAEAKELGMTNTNFVNATGMPDENHHASARDLAI 208

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   + K    YYK +S ++F Y N    N N LL     +DG+KTG+T  +G+ +  S 
Sbjct: 209 LARAIIKQGGDYYKIYSEKEFTYNNITQGNRNALLRTDPTVDGLKTGHTDAAGYCLAASS 268

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
              D  +++V+MG  + Q R  ++ EL+       + K
Sbjct: 269 LRNDMRLISVIMGSKSMQARADQSRELLNWGFGHFSTK 306


>gi|145630679|ref|ZP_01786458.1| hypothetical protein CGSHi22421_02014 [Haemophilus influenzae
           R3021]
 gi|144983805|gb|EDJ91255.1| hypothetical protein CGSHi22421_02014 [Haemophilus influenzae
           R3021]
          Length = 393

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 87/287 (30%), Positives = 150/287 (52%), Gaps = 18/287 (6%)

Query: 33  KILFLSIIMISMASELHA--------KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASL 80
           KI FLS  +   A  + A         P+ ++   +++D N   +      D+ +YPASL
Sbjct: 7   KIAFLSSFVALSAFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASL 66

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALIT 137
           TKMMT Y++   L+  K+H    + + ++A  +N    SK++L   T  +       +I 
Sbjct: 67  TKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIV 126

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND + A  E ISG+   F   M+   ++ G++NT +    GL D NQ ++ARD AI+
Sbjct: 127 VSGNDATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAII 186

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
           G  + ++ P+ YK +S + F +      N N LL  K  N+DG+KTG+T  +G+N+V S 
Sbjct: 187 GAHIIRDLPEEYKIYSEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASA 246

Query: 257 -RYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHRK 301
               +  +++VVMG+PT + R+ ++ +L+       +T K  +  ++
Sbjct: 247 TTSNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKE 293


>gi|9971925|gb|AAG10487.1|AF279106_49 predicted penicillin-binding protein 6 precursor [uncultured marine
           gamma proteobacterium EBAC31A08]
          Length = 385

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 79/279 (28%), Positives = 142/279 (50%), Gaps = 7/279 (2%)

Query: 31  MGKILFLSI---IMISMASELHAKPK---YSSIVIDVNKNQMTGF-KQDEPRYPASLTKM 83
           M K+LF  +   I I   S +   P+    S I+I+ N N +      D    PAS+TK+
Sbjct: 1   MKKLLFTLLSTSIFIQAQSFVPDSPELDLKSYILIEPNTNTVIAEFNSDLEIEPASMTKI 60

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT Y++ + + +  + L+ ++ +S+ A     SK +++     T    +  ++ +S ND 
Sbjct: 61  MTSYVVADQIANGLISLDDEVLISEKAWRMQGSKTFIEAGKKVTVSDLLKGIMIQSGNDA 120

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           S A  E+  G+E+ F  LM++ A  + M NTI++N++GL D+N  ++A+D A L      
Sbjct: 121 SVAIAEYAGGTERGFVDLMNSYAASLEMNNTIFQNSTGLPDENHFSSAKDLANLTANYIN 180

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
            FP+ Y  +  ++F + N    N NKLL +  + DG+KTG+T  +G+ +V S +     +
Sbjct: 181 KFPEEYALYKQKQFTFNNIKQLNRNKLLWRDDSADGVKTGHTEAAGYCLVGSAKRGGMRL 240

Query: 264 VAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKD 302
           + VV G  +  +R   +  L+       T +   +  K+
Sbjct: 241 ITVVAGSKSDNDRFLSSQRLLEYGFRFFTTQKMLSAEKE 279


>gi|293395975|ref|ZP_06640256.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM
           4582]
 gi|291421473|gb|EFE94721.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM
           4582]
          Length = 382

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 84/273 (30%), Positives = 137/273 (50%), Gaps = 13/273 (4%)

Query: 29  QLMGKILFLSIIMISMA---SELHAKP--KYSSIVIDVNKNQMTGFK-QDEPRYPASLTK 82
            ++G +L L+      A     L   P    S +++D    Q+      D+ R PASLTK
Sbjct: 1   MVIGILLPLAAQAADTAGDFPSLTPPPIDAASYVLMDYASGQIMAQNHADQRRNPASLTK 60

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALI 136
           +MT  +I   L   K+ L+  + V K A        +  S ++LK     T       +I
Sbjct: 61  LMTGLVIDHALDQHKISLDDVVTVGKDAWAAGNPVFKGSSLMFLKPGDRVTVRDLSRGII 120

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND   A  ++++GS+  F  LM+NKA ++G++NT ++   GL    Q TTA D A+
Sbjct: 121 IDSGNDACVAMADYVAGSQTAFVDLMNNKAAQLGLKNTHFETVHGLDAPGQYTTAGDLAV 180

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTS 255
           +   +  + P  Y  +S R   +      N N LL  K  ++DG+KTG+T ++GFNI+ S
Sbjct: 181 ISRAIIMSEPAEYHMYSERSLTWNGITQQNRNGLLWDKTLHVDGLKTGHTESAGFNIIAS 240

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
               D  ++AVVMG  + + R+++A +L++  L
Sbjct: 241 ATEGDRRLIAVVMGGKSPKGREEQARKLLSWGL 273


>gi|238920432|ref|YP_002933947.1| D-alanyl-D-alanine carboxypeptidase DacC [Edwardsiella ictaluri
           93-146]
 gi|238870001|gb|ACR69712.1| D-alanyl-D-alanine carboxypeptidase DacC [Edwardsiella ictaluri
           93-146]
          Length = 450

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 74/272 (27%), Positives = 134/272 (49%), Gaps = 11/272 (4%)

Query: 28  IQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKM 83
           I+ +     LS++ + + +   A P     + I++D +  ++      DE   PASLTK+
Sbjct: 61  IRRLTLGASLSLVALPLQAADPAPPQVNAKAYILLDYDSGRVLTEGNADERLDPASLTKI 120

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALIT 137
           M  Y+I + L+S K+     + V K A        +  S ++LK        +    ++ 
Sbjct: 121 MASYVIGQALKSGKIAPGDMVVVGKDAWATGNPLLRGSSLMFLKPGDRVPVAELNRGVVI 180

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  + ++GS+  F  LM+      G++NT ++   GL  + Q ++ARD A++
Sbjct: 181 QSGNDASIALADHVAGSQDTFVNLMNQYVSAWGLKNTHFQTVHGLDSEGQYSSARDMALI 240

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSL 256
              L  + P  Y+    ++F +      N N+LL     N+DG+KTG+T  +G N+V S 
Sbjct: 241 SQRLIADVPDEYQLNKEKEFTFNKIRQINRNRLLWDSSLNVDGVKTGFTSGAGHNLVASA 300

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
                 +++VV+G PT + R  ++ +L+T   
Sbjct: 301 IDGPMRLISVVLGAPTDRVRFDESKKLLTWGF 332


>gi|152978379|ref|YP_001344008.1| Serine-type D-Ala-D-Ala carboxypeptidase [Actinobacillus
           succinogenes 130Z]
 gi|150840102|gb|ABR74073.1| Serine-type D-Ala-D-Ala carboxypeptidase [Actinobacillus
           succinogenes 130Z]
          Length = 395

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 83/270 (30%), Positives = 148/270 (54%), Gaps = 13/270 (4%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
             +L+A+   + I++D N   +   F  D+ +YPASLTKMMT Y + + ++  K+H N Q
Sbjct: 35  PPQLNAQ---TYILMDYNSGAVLAAFNPDQRQYPASLTKMMTSYAVGDAMKQGKIHPNDQ 91

Query: 104 IPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
           + + +++  +N    SK++L      +       +I  S ND   A  E +SGS ++F  
Sbjct: 92  VTIGESSWGKNFPGSSKMFLNLNQQVSVADLNRGVIVVSGNDACVALAEHVSGSTEQFVA 151

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
           LM+   ++ G++NT +    GL D NQ ++ARD A++GI +  + P+ YK ++ + F + 
Sbjct: 152 LMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMALIGIRIIHDLPEEYKIYAEKDFTFN 211

Query: 221 NRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY-KDDPIVAVVMGMPTSQERDQ 278
                N N LL  K  N+DG+KTG+T  +G+N+V S     +  +++VVMG+PT + R+ 
Sbjct: 212 KIKQPNRNGLLWDKSMNVDGMKTGHTSQAGYNLVASATNANNMRLISVVMGVPTYKGREV 271

Query: 279 KALELITSFLE----KKTLKHQQTHRKDNL 304
           ++ +L+          KTL+  +   +  +
Sbjct: 272 ESKKLLQWGFNSFDTFKTLEAGKAVGEQPV 301


>gi|240950037|ref|ZP_04754345.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus
           minor NM305]
 gi|240295515|gb|EER46258.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus
           minor NM305]
          Length = 392

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 87/298 (29%), Positives = 156/298 (52%), Gaps = 24/298 (8%)

Query: 31  MGKILFLSIIMISMASELHAKP--------------KYSSIVIDVNKNQMTGF-KQDEPR 75
           M K L  S+ + +MA    A                  + I++D N   +      D+ +
Sbjct: 1   MKKTLLKSVSLCAMALSSFAYADVNTDFGISAPQLNAQTYILMDYNSGAVLASLNPDQRQ 60

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGI 132
           YPASLTKMMT Y++ + ++  K+  +  + V++ +  Q     S ++L   T  +    +
Sbjct: 61  YPASLTKMMTAYVVGDAIKQGKVRNSDMVTVTENSWAQKFPGSSLMFLDLNTQVSVGDLM 120

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             LI  S ND + A  E  SGS++ F   M+  A++ G++NT +    GL D NQ ++AR
Sbjct: 121 KGLIIVSGNDAAVALAEHTSGSQQAFIDQMNKYAQQFGLKNTYFTTVHGLDDPNQFSSAR 180

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYR-NRIITNHNKLLN-KMHNIDGIKTGYTRNSGF 250
           D AI+G  + ++ P+ YK ++ ++F+Y   +   N N LL  K  N+DG+KTG+T  +G+
Sbjct: 181 DMAIIGTHVIRDQPEEYKIYAEKEFQYNIKKPQPNRNGLLWDKTMNVDGMKTGHTDKAGY 240

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK----KTLKHQQTHRKDNL 304
           N+V S    +  +++VVMG+PT + R+ ++ +L+          K+L   Q  +++++
Sbjct: 241 NLVASATNSNTRLISVVMGVPTYKGREVESKKLLQWGFANFETVKSLPAGQAIKEESV 298


>gi|161619123|ref|YP_001593010.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC
           23365]
 gi|254704458|ref|ZP_05166286.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
           686]
 gi|261755137|ref|ZP_05998846.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
           686]
 gi|161335934|gb|ABX62239.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC
           23365]
 gi|261744890|gb|EEY32816.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
           686]
          Length = 472

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 114/312 (36%), Positives = 182/312 (58%), Gaps = 8/312 (2%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYI 88
           L+  +   S +     +      +Y++IV+D N  +       D  RYPASLTKMMTLY+
Sbjct: 21  LLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLYM 80

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           +FE + + +++ +T+IPVS  AA++ P+K+  +       E   LA+IT+SANDV+ A G
Sbjct: 81  LFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVG 140

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E++ GSE++FA +M+ +A+++GM+NT ++NASGL +  Q ++ARD AILG+ LR++FP+ 
Sbjct: 141 EYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPRE 200

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           + YFS   F +R + I  HN+LL ++  +DGIKTGYT  SG+N+V+S+      +VAVVM
Sbjct: 201 FAYFSRSSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVM 260

Query: 269 GMPTSQERDQKALELITSFL-------EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRT 321
           G  T   RD    +LI  +L           L   ++     ++S  L K+         
Sbjct: 261 GGNTGASRDAHMAQLIRKYLPMAARGRNNDALIAARSEAPQVVASIDLPKAKRAPVPVAR 320

Query: 322 YSQFKKIDAKAH 333
            +    I+A+  
Sbjct: 321 IAVEDIINAEIG 332


>gi|254509295|ref|ZP_05121387.1| penicillin-binding protein 6 [Vibrio parahaemolyticus 16]
 gi|219547783|gb|EED24816.1| penicillin-binding protein 6 [Vibrio parahaemolyticus 16]
          Length = 293

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 84/258 (32%), Positives = 139/258 (53%), Gaps = 8/258 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
             + I++  A ++ AK     +++D +  ++   K+ +    PASLTKMMT Y+I + L+
Sbjct: 26  IATPIVVPDAPQIAAK---GYVLMDFHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELE 82

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              + L   + +SK A  +N    SK++++  T    E     +I +S ND   A  E I
Sbjct: 83  RGNISLQDDVTISKNAWAKNFPDSSKMFIEVGTTVKVEDLNRGIIIQSGNDACVAMAEHI 142

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  F  LM+  A  IGM++T + N  GL + +  +T  D A+LG  L ++ P  Y+ 
Sbjct: 143 AGSEDAFVDLMNAWADTIGMKDTHFANVHGLDNPDLYSTPYDMALLGSALIRDVPDEYRI 202

Query: 212 FSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +K+ Y      N N LL  K  N+DGIKTG+T N+G+++V+S       +VAVVMG 
Sbjct: 203 YSEKKYTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLVAVVMGT 262

Query: 271 PTSQERDQKALELITSFL 288
             +  R  ++ +L++   
Sbjct: 263 KNANARKSESKKLLSYGF 280


>gi|319774981|ref|YP_004137469.1| penicillin-binding protein 5 [Haemophilus influenzae F3047]
 gi|317449572|emb|CBY85777.1| penicillin-binding protein 5 precursor [Haemophilus influenzae
           F3047]
          Length = 393

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 87/286 (30%), Positives = 149/286 (52%), Gaps = 18/286 (6%)

Query: 33  KILFLSIIMISMASELHA--------KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASL 80
           KI FLS  +   A  + A         P+ ++   +++D N   +      D+ +YPASL
Sbjct: 7   KIAFLSSFVALSAFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASL 66

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALIT 137
           TKMMT Y++   L+  K+H    + + ++A  +N    SK++L   T  +       +I 
Sbjct: 67  TKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIV 126

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND + A  E ISG+   F   M+   ++ G++NT +    GL D NQ ++ARD AI+
Sbjct: 127 VSGNDATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAII 186

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
           G  + ++ P+ YK +S + F +      N N LL  K  N+DG+KTG+T  +G+N+V S 
Sbjct: 187 GAHIIRDLPEEYKIYSEKDFTFNKIKQANRNGLLWDKTINVDGMKTGHTSQAGYNLVASA 246

Query: 257 -RYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHR 300
               +  +++VVMG+PT + R+ ++ +L+       +T K  +  +
Sbjct: 247 TTSNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGK 292


>gi|238795411|ref|ZP_04638926.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia mollaretii ATCC
           43969]
 gi|238720530|gb|EEQ12331.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia mollaretii ATCC
           43969]
          Length = 383

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 78/256 (30%), Positives = 132/256 (51%), Gaps = 11/256 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   + I+ID N  ++      D  R PASLTKMMT Y+I + +++ K+ 
Sbjct: 17  MIPGVPQIDAE---AYILIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGKIG 73

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V K A        Q  S ++LK        +    +  +S ND   A  ++++G
Sbjct: 74  PEDMVTVGKDAWATGNPEFQGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAG 133

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+N    +G+QNT +K   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 134 SQDSFVNLMNNYVNALGLQNTHFKTVHGLDADGQFSSARDMALIGQALIRDVPDEYTIYK 193

Query: 214 IRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F + N    N N LL     N+DGIKTG+T ++G+N+V S       +++ V+G  T
Sbjct: 194 EKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTASAGYNLVASATDGQMRLISAVLGGRT 253

Query: 273 SQERDQKALELITSFL 288
            + R+ ++ +L+T   
Sbjct: 254 YKGRETESKKLLTWGF 269


>gi|317491387|ref|ZP_07949823.1| D-alanyl-D-alanine carboxypeptidase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920934|gb|EFV42257.1| D-alanyl-D-alanine carboxypeptidase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 402

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 80/286 (27%), Positives = 143/286 (50%), Gaps = 11/286 (3%)

Query: 11  KKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GF 69
           KK  LT     I +   + LM   +  +      A +++AK   + +++D +  ++    
Sbjct: 2   KKIALTTLIKKITLGAGLTLMAIPMTYADEAAPAAPQINAK---AYVLMDYDSGKILTEA 58

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEK 123
             DE   PASLTK+M  Y+I + +++ K+  N  + V K A        +  S ++LK  
Sbjct: 59  NADERLDPASLTKIMASYVIGQSIKAGKITPNDMVVVGKDAWATGNPILRGSSLMFLKPG 118

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
                 +    ++ +S ND S A  ++++GS+  F  LM+   +  G++NT +K   GL 
Sbjct: 119 DRVPVSELNKGVVIQSGNDASIALADYVAGSQDAFVSLMNKYVEAWGLKNTSFKTVHGLD 178

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKT 242
            + Q ++ARD A++   L  + P  Y     ++F +      N N+LL     N+DGIKT
Sbjct: 179 SEGQYSSARDMALISQRLIADVPDEYALHKEKEFTFNKIRQVNRNRLLWDSSLNVDGIKT 238

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           GYT  +G N+V+S       +++VV+G PT + R +++ +L+T   
Sbjct: 239 GYTSGAGHNLVSSATDGPMRLISVVLGAPTDRIRFEESKKLLTWGF 284


>gi|304397386|ref|ZP_07379264.1| Beta-lactamase [Pantoea sp. aB]
 gi|304355004|gb|EFM19373.1| Beta-lactamase [Pantoea sp. aB]
          Length = 387

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 77/278 (27%), Positives = 133/278 (47%), Gaps = 12/278 (4%)

Query: 25  QRNIQLMGKILFLSIIM----ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPAS 79
           +R +  +   LF + +     I       A    S +++D    Q+      DE R PAS
Sbjct: 3   RRLLFTVTATLFWASLAQADAIPFPVTPPAIDAASWVLMDATTGQVLTAGNPDERRNPAS 62

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++   +  KK+  +  + V K A        +  S ++LK     +      
Sbjct: 63  LTKLMTGYVVDRAIDQKKISRDDMVTVGKDAWGAGNPVFKGSSLMFLKPGDKLSVRDLSR 122

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I  S ND   A  ++++GSE  F  +M++  +K+G+QNT ++   GL    Q ++A D
Sbjct: 123 GVIIDSGNDACVALADYVAGSEANFVGMMNHYVEKLGLQNTHFETVHGLDAPGQFSSALD 182

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNI 252
            A L   +    P +Y  +S +   +      N N LL   + ++DG+KTG+T  +GFNI
Sbjct: 183 MAKLSRAIIDGEPDFYAMYSEKTLTWNGITQNNRNGLLWDNNLHVDGLKTGHTETAGFNI 242

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           + S       ++AVVMG  +S+ R+++A +L+      
Sbjct: 243 IASNVVGKHRLIAVVMGGKSSKGREEQARKLLVWGQNT 280


>gi|158422626|ref|YP_001523918.1| serine-type D-Ala-D-Ala carboxypeptidase [Azorhizobium caulinodans
           ORS 571]
 gi|158329515|dbj|BAF87000.1| serine-type D-Ala-D-Ala carboxypeptidase [Azorhizobium caulinodans
           ORS 571]
          Length = 512

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 78/260 (30%), Positives = 148/260 (56%), Gaps = 4/260 (1%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYII 89
           + ++L  + ++ +  + ++A P    ++++ +  ++   +   +P YPAS+TK+MT+Y+ 
Sbjct: 58  LVRLLSATALLCAAGASVNAAPV---LLVEADTGRVLEQQDAGKPWYPASVTKLMTVYVA 114

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
              ++  ++  ++ + VS  AA+Q PSK+  K  T  T E  +  L+ +SAND++    E
Sbjct: 115 LNAVKEGRISFDSLLTVSPLAASQQPSKMGFKPGTQLTLENALRMLMVKSANDMAVVIAE 174

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            + GS   F   M++ A+++GM  T Y N +GL D  QITTARD A+L   L  +FP+  
Sbjct: 175 GVGGSMPAFVEEMNDTAERLGMAGTHYNNPNGLPDPGQITTARDLAVLARALIYHFPEQE 234

Query: 210 KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
             F I   R    +  N+N+L+++    DG+KTG+  ++GFN+V +    +  ++AV++G
Sbjct: 235 TLFRIPAMRLGKVVYRNYNRLIDRYPGADGMKTGFICSAGFNLVATATRGNKRLIAVILG 294

Query: 270 MPTSQERDQKALELITSFLE 289
            P++  R ++A  L+    +
Sbjct: 295 APSAVARTEQAAMLLEKGFQ 314


>gi|115525408|ref|YP_782319.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisA53]
 gi|115519355|gb|ABJ07339.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisA53]
          Length = 584

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 109/252 (43%), Positives = 157/252 (62%), Gaps = 1/252 (0%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P ++SI++D N          D  R PASLTK+MTLY++FE L++ KL L++++ VS+ A
Sbjct: 52  PAFASIIVDGNTGATLSANNPDALRRPASLTKIMTLYLLFERLEAGKLSLDSEMDVSEHA 111

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           + Q P+KL L+       E  I AL+TRSAND +    E I G E  FA LM+ KA+ +G
Sbjct: 112 SIQAPTKLGLRPGQTLRVEDAIKALVTRSANDAAVVIAEAIGGDEDDFAKLMTKKARALG 171

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M  T+Y+NASGL + +QITTARDQA LG  +++ FP+YY+YF+   F Y+   I NHN+L
Sbjct: 172 MTRTVYRNASGLPNDDQITTARDQATLGRAIQERFPRYYRYFATSVFVYKGHAIRNHNRL 231

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L  +  +DGIKTGYTR SGFN+V+S+R  +  ++ VV+G  +   RD     L+   L+K
Sbjct: 232 LGSVEGVDGIKTGYTRASGFNLVSSMRRGNRHLIGVVLGGRSGGSRDAAMRSLLAENLDK 291

Query: 291 KTLKHQQTHRKD 302
              +       +
Sbjct: 292 AATRRTAVAINE 303


>gi|218549792|ref|YP_002383583.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia
           fergusonii ATCC 35469]
 gi|218357333|emb|CAQ89970.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia fergusonii ATCC 35469]
 gi|324114754|gb|EGC08722.1| D-alanyl-D-alanine carboxypeptidase [Escherichia fergusonii B253]
 gi|325498188|gb|EGC96047.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia
           fergusonii ECD227]
          Length = 403

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 79/306 (25%), Positives = 147/306 (48%), Gaps = 22/306 (7%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI  A ++ A+   + I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGAPQIDAE---AWILIDYNSGKVLAEQNADTRRDPASLTKMMTSYVIGQAMKAGKFK 93

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A        +  S ++LK        Q I  +  +S ND   A  ++ +G
Sbjct: 94  ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYAAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL  + Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVNALGLKNTHFETVHGLDAEGQYSSARDMALIGQALIRDVPNEYAIYK 213

Query: 214 IRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL     N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 214 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTNQAGYNLVASATEGQMRLISAVMGGRT 273

Query: 273 SQERDQKALELITSFLE-KKTLKHQQTHRK----------DNLSSTSLKKSLMIKKLKRT 321
            + R+ ++ +L+T      +T+   +  ++          ++ +S  + K + +   +  
Sbjct: 274 FKGREAESKKLLTWGFRFFETVNPLKVGKEFASEPVWFGDNDRASLGVDKDVYLTIPRGR 333

Query: 322 YSQFKK 327
               K 
Sbjct: 334 LKDLKA 339


>gi|238789672|ref|ZP_04633455.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia frederiksenii
           ATCC 33641]
 gi|238722225|gb|EEQ13882.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia frederiksenii
           ATCC 33641]
          Length = 401

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 72/241 (29%), Positives = 127/241 (52%), Gaps = 8/241 (3%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-- 112
            +++D +  ++      D+   PASLTK+M+ Y+I + +++ K+H +  + V K A    
Sbjct: 43  YVLMDYDSGKVLAEGNSDQRLDPASLTKIMSSYVIGQAIKAGKVHPDDLVTVGKDAWATG 102

Query: 113 ----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
               +  S ++LK             ++ +S ND S A  ++I+GS+  F  LM+N AK 
Sbjct: 103 NPALRGSSLMFLKPGDQVKLSDLNKGIVIQSGNDASIALADYIAGSQDSFVGLMNNYAKA 162

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           +G+ NT +    GL    Q +TA D A+LG  L ++ P+ Y     ++F +      N N
Sbjct: 163 LGLNNTNFMTVHGLDAPGQYSTAHDMAVLGQALIRDVPEEYALHKEKEFTFNKIRQINRN 222

Query: 229 KLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           +LL   + N+DG+KTGYT  +G N+V S       +++VV+G P+ + R  ++ +L+T  
Sbjct: 223 RLLWNTNLNVDGMKTGYTTGAGHNLVASATDGPMRLISVVLGAPSDRVRFSESEKLLTWG 282

Query: 288 L 288
            
Sbjct: 283 F 283


>gi|260582057|ref|ZP_05849852.1| D-alanyl-D-alanine carboxypeptidase [Haemophilus influenzae NT127]
 gi|260094947|gb|EEW78840.1| D-alanyl-D-alanine carboxypeptidase [Haemophilus influenzae NT127]
          Length = 393

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 87/287 (30%), Positives = 149/287 (51%), Gaps = 18/287 (6%)

Query: 33  KILFLSIIMISMASELHA--------KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASL 80
           KI FLS      A  + A         P+ ++   +++D N   +      D+ +YPASL
Sbjct: 7   KIAFLSSFAALSAFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASL 66

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALIT 137
           TKMMT Y++   L+  K+H    + + ++A  +N    SK++L   T  +       +I 
Sbjct: 67  TKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIV 126

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND + A  E ISG+   F   M+   ++ G++NT +    GL D NQ ++ARD AI+
Sbjct: 127 VSGNDATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAII 186

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
           G  + ++ P+ YK +S + F +      N N LL  K  N+DG+KTG+T  +G+N+V S 
Sbjct: 187 GAHIIRDLPEEYKIYSEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASA 246

Query: 257 -RYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHRK 301
               +  +++VVMG+PT + R+ ++ +L+       +T K  +  ++
Sbjct: 247 TTSNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKE 293


>gi|260912849|ref|ZP_05919335.1| D-alanyl-D-alanine carboxypeptidase DacA [Pasteurella dagmatis ATCC
           43325]
 gi|260633227|gb|EEX51392.1| D-alanyl-D-alanine carboxypeptidase DacA [Pasteurella dagmatis ATCC
           43325]
          Length = 395

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 87/294 (29%), Positives = 154/294 (52%), Gaps = 20/294 (6%)

Query: 28  IQLMGKILFLSIIMISM-------ASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPAS 79
           I L+     L I   +        A +L+A+   + I++D N   +      D+ +YPAS
Sbjct: 11  IALLAGAFALPINAFAQDVDYGITAPQLNAQ---TYILMDYNSGAVLASLNPDQRQYPAS 67

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALI 136
           LTKMMT Y++ + L+  K++ N  + + ++A  +N    SK++L      +       +I
Sbjct: 68  LTKMMTSYVVGDALKQGKINNNDMVTIGESAWGKNFPGSSKMFLNLNQQVSVSDLNRGVI 127

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND S A  E +SGS   F   M+   ++ G++NT + +  GL D NQ +++RD AI
Sbjct: 128 IVSGNDASVAIAEHVSGSVPAFVEAMNKYVQQFGLKNTHFTSVHGLDDDNQYSSSRDMAI 187

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTS 255
           +G  L ++ P+ YK ++ + F +      N N LL  K   +DGIKTG+T  +G+N+V+S
Sbjct: 188 IGAHLIRDLPEEYKIYAEKDFTFNKIKQNNRNGLLWDKTIQVDGIKTGHTDKAGYNLVSS 247

Query: 256 LRY-KDDPIVAVVMGMPTSQERDQKALELITSFL----EKKTLKHQQTHRKDNL 304
                +  +++VVMG+PT + R+ ++ +L+          KTL+  +   + ++
Sbjct: 248 ATNSNNMRLISVVMGVPTIKGREVESKKLLQWGFANFETFKTLEAGKAISEQSV 301


>gi|90415028|ref|ZP_01222988.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
           profundum 3TCK]
 gi|90323842|gb|EAS40448.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
           profundum 3TCK]
          Length = 393

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 80/268 (29%), Positives = 141/268 (52%), Gaps = 10/268 (3%)

Query: 31  MGKILFLSIIMISMA-----SELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMM 84
           +   +FLS+ + ++A      +         +++D N  ++   K       PASLTK+M
Sbjct: 13  VAGTVFLSLSLPALAVPTVVPDAPVLGAKGYVLMDYNTGRVLVEKNANVKLNPASLTKLM 72

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSAN 141
           T Y+  + ++   +  +  + +S+ A  +N    SK++++  T  +       LI +S N
Sbjct: 73  TSYVAGQEMKRGNISQDDIVVISRNAWARNFSDSSKMFIEVGTEVSMMDLYRGLIIQSGN 132

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D S A  E ++GS+  F  LM++ AK +GM N+ + NA GL + N  +T  D A+LG  L
Sbjct: 133 DASVAIAEHVAGSQDAFVGLMNSWAKNLGMNNSQFANAHGLDNPNLYSTPYDIALLGQAL 192

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
            K+ P  Y  +S R F Y N    N N LL  K  N+DG+KTGYT  +G+++ +S    +
Sbjct: 193 IKDLPDLYPLYSERSFTYNNITQRNRNGLLGDKSINVDGMKTGYTGGAGYSLASSATQGN 252

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFL 288
             +++VVMG  +++ R+ ++ +L+    
Sbjct: 253 MRLISVVMGSSSTKSREAESKQLLNYGF 280


>gi|254521328|ref|ZP_05133383.1| D-alanyl-D-alanine carboxypeptidase [Stenotrophomonas sp. SKA14]
 gi|219718919|gb|EED37444.1| D-alanyl-D-alanine carboxypeptidase [Stenotrophomonas sp. SKA14]
          Length = 406

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 72/240 (30%), Positives = 131/240 (54%), Gaps = 6/240 (2%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           + +++D    Q+   +   E   PAS+TK+MT Y+I   +++ K+  + Q+ +S+ A  +
Sbjct: 56  AWVLMDYATGQVLAGENVHEQLAPASITKVMTSYVIAAEVKNGKVRADDQVMMSERAWRE 115

Query: 114 NP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                  S            E     +  +S ND + A  E ++GSE+ FA LM++ A K
Sbjct: 116 GGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAK 175

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           IGM+++ + NA GL  +   +TA D A+LG  + +++P+ Y Y  I++F+  N    N N
Sbjct: 176 IGMKDSHFVNAHGLTAQGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGNIKQPNRN 235

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            LL +  ++DGIKTG+T  +G+ +++S +  D  ++AVV+G  + ++R   +L L+    
Sbjct: 236 LLLWRDGSVDGIKTGHTSEAGYCLMSSAQRGDQRLIAVVLGGASEKQRADDSLALLNWGF 295


>gi|85714340|ref|ZP_01045328.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
           sp. Nb-311A]
 gi|85698787|gb|EAQ36656.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
           sp. Nb-311A]
          Length = 499

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 87/310 (28%), Positives = 152/310 (49%), Gaps = 9/310 (2%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYL 93
           + L+ ++I+ A    A    + ++I+ +  ++   +    P YPAS+TK+MT Y+    +
Sbjct: 48  MVLAGLLIAGAPLRAAHATEAHLLIEADTGKVLEAENATFPWYPASITKLMTAYVTLTAV 107

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           +  ++ L+T + VS TAA Q+PSK+  +  T  T +  +  ++ +SAND++    E + G
Sbjct: 108 KHGRITLDTLLTVSPTAAAQSPSKMGFRPGTRVTVDNALKMMLVKSANDMAVVLAEGVGG 167

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S   F+  M+  A+++GM  T Y N +GL    QI++ARD AIL      + P+Y  +  
Sbjct: 168 SIDGFSAEMNAAAQRLGMTQTSYVNPNGLPADGQISSARDIAILARAFIHDLPEYEYFVH 227

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           I   RY  R+  N NKL+ +    DG KTG+   SG+N+V S       ++AVV+G  + 
Sbjct: 228 IPSIRYGRRVTHNFNKLIGRFPGADGFKTGFICASGYNLVASATQNGKRLIAVVLGASSG 287

Query: 274 QERDQKALELITSFLEKKTLKH-----QQTHRKDNLSSTS--LKKSLMIKKLKRTYSQFK 326
             R  +A +++       TL           R   +++    L+  +   K     S   
Sbjct: 288 TMRAVRAAQMLERGFANNTLSWLRPALGTVDRLAPIAAAPPNLRDEMCGPKRMHPASDED 347

Query: 327 K-IDAKAHST 335
             + A   +T
Sbjct: 348 NDVVANTSAT 357


>gi|294637512|ref|ZP_06715798.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC
           23685]
 gi|291089344|gb|EFE21905.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC
           23685]
          Length = 403

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 84/275 (30%), Positives = 142/275 (51%), Gaps = 17/275 (6%)

Query: 31  MGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQ-DEPRYPASL 80
           +G +L +++   + A +++ K            + I+ID N  ++      DE R PASL
Sbjct: 15  VGSLLAVALTGAARADDVNLKTMIPGVPQIDAEAYILIDYNSGKVLAEHNADERRNPASL 74

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILA 134
           TKMMT Y+I + +++ K   N  + V K A        Q  S ++LK     +    I  
Sbjct: 75  TKMMTSYVIGQAMRAGKFGENDVVTVGKDAWATGNPVFQGSSLMFLKPGDQVSVGNLIRG 134

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +   S ND   A  ++++GS+  F  LM+N  K +G+QNT ++   GL    Q ++ARD 
Sbjct: 135 INLVSGNDACVAMADYVAGSQDAFVGLMNNYVKALGLQNTHFETVHGLDAPGQFSSARDM 194

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIV 253
           A++G  L ++ P  Y  +  ++F Y N    N N LL     N+DGIKTG+T ++G+N+V
Sbjct: 195 ALIGQALIRDVPHEYAIYKEKEFTYNNIRQMNRNGLLWDTSMNVDGIKTGHTASAGYNLV 254

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            S    +  +++ VMG  T + R+ ++ +L+T   
Sbjct: 255 ASATEGNMRLISAVMGGRTFKGRETESKKLLTWGF 289


>gi|306844035|ref|ZP_07476630.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO1]
 gi|306275790|gb|EFM57514.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO1]
          Length = 472

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 113/312 (36%), Positives = 181/312 (58%), Gaps = 8/312 (2%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYI 88
           L+  +   S +     +      +Y++IV+D N  +       D  RYPASLTKMMTLY+
Sbjct: 21  LLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLYM 80

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           +FE + + +++ +T+IPVS  AA++ P+K+  +       E   LA+IT+SANDV+ A G
Sbjct: 81  LFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAVG 140

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E++ GSE++FA +M+ +A+++GM+ T ++NASGL +  Q ++ARD AILG+ LR++FP+ 
Sbjct: 141 EYLGGSEERFAQMMTARARRLGMRKTTFRNASGLPNMAQHSSARDMAILGMALRRHFPRE 200

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           + YFS   F +R + I  HN+LL ++  +DGIKTGYT  SG+N+V+S+      +VAVVM
Sbjct: 201 FAYFSRSSFEFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVVM 260

Query: 269 GMPTSQERDQKALELITSFL-------EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRT 321
           G  T   RD    +LI  +L           L   ++     ++S  L K+         
Sbjct: 261 GGNTGASRDAHMAQLIRKYLPMAARGRNNDALIAARSEAPQVVASIDLPKAKRAPVPVAR 320

Query: 322 YSQFKKIDAKAH 333
            +    I+A+  
Sbjct: 321 IAVEDIINAEIG 332


>gi|260598500|ref|YP_003211071.1| D-alanyl-D-alanine carboxypeptidase [Cronobacter turicensis z3032]
 gi|260217677|emb|CBA32019.1| D-alanyl-D-alanine carboxypeptidase dacD [Cronobacter turicensis
           z3032]
          Length = 412

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 78/328 (23%), Positives = 151/328 (46%), Gaps = 15/328 (4%)

Query: 4   QKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMI---SMASELHAKPKY---SSI 57
           ++IQ++ KK         + ++    +    + L+ I     + A  +   P     S +
Sbjct: 5   KEIQTAVKKAPHREVTEDMLLKFRPMIAASCIMLAGITAQAHAAALSMPQPPAIMAGSYV 64

Query: 58  VIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT---- 112
           ++D    Q+     +   R PASLTK+MT Y++   + S ++  +  + V K A      
Sbjct: 65  LMDYTTGQILAANNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDVVTVGKDAWAKDNP 124

Query: 113 --QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             +  S ++LK     T       LI  S ND   A  ++++G + +F  +M++  +K+G
Sbjct: 125 VFEGSSLMFLKAGDRVTVRDLSRGLIVDSGNDACVALADYVAGGQPQFVSMMNDYVQKLG 184

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           +++T ++   GL    Q ++A D A+L   +    P +Y  +S +   +      N N L
Sbjct: 185 LKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPAFYHMYSEKSLTWNGITQQNRNGL 244

Query: 231 LN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           L  K  N+DG+KTG+T  +GFN++ S       ++AV+MG  + + R+ +A +L+    +
Sbjct: 245 LWDKTLNVDGLKTGHTSGAGFNLIASSVDGKRRLIAVIMGADSPKGREDQARKLLHWGQQ 304

Query: 290 K-KTLKHQQTHRKDNLSSTSLKKSLMIK 316
              T++  Q  +K         K+  + 
Sbjct: 305 TFDTVEILQKGKKVGTERVWYGKNEQVA 332


>gi|52425884|ref|YP_089021.1| DacC protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307936|gb|AAU38436.1| DacC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 394

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 87/297 (29%), Positives = 156/297 (52%), Gaps = 20/297 (6%)

Query: 25  QRNIQLMGKILFLSIIMIS-------MASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRY 76
           + ++ +   +L L + + +       +  +++A+   + +V+D N   +      D+ +Y
Sbjct: 8   KTSLAIFAGLLALPLTVSAEDVNFGIVPPQVNAQ---TYVVMDYNSGAVLASLNPDQRQY 64

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGIL 133
           PASLTKMMT Y+I + L+  K+H    I V +++  +N    SK++L      T EQ   
Sbjct: 65  PASLTKMMTSYVIGDALKQGKIHNTDTITVGESSWGKNFPDSSKMFLNLNQQVTVEQLNR 124

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I  S ND   A  E +SG+   F   M+  A++ G++NT +    GL D NQ ++ARD
Sbjct: 125 GIIIVSGNDACVAMAEHVSGTTDNFINSMNKYAEQFGLKNTHFTTVHGLDDANQYSSARD 184

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNI 252
            AI+G  + ++ P+ YK ++ + F +      N N LL  K  N+DG+KTG+T  +G+N+
Sbjct: 185 MAIIGAHIIRDLPEEYKIYAEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNL 244

Query: 253 VTSLRY-KDDPIVAVVMGMPTSQERDQKALELITSFLE----KKTLKHQQTHRKDNL 304
           V S     +  ++ VVMG+PT + R+ ++ +L+          KTL+  +     ++
Sbjct: 245 VASATNADNMRLITVVMGVPTYKGREVESKKLLQWAFNSFDTFKTLEAGKAVTNQDI 301


>gi|167772329|ref|ZP_02444382.1| hypothetical protein ANACOL_03706 [Anaerotruncus colihominis DSM
           17241]
 gi|167665432|gb|EDS09562.1| hypothetical protein ANACOL_03706 [Anaerotruncus colihominis DSM
           17241]
          Length = 391

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 80/265 (30%), Positives = 130/265 (49%), Gaps = 6/265 (2%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  S+I+I+ +  ++   K  DE   PAS+TK+MTL ++ E L S ++ L   +  S+ A
Sbjct: 44  PARSAILIEQSTGRVLFEKNADEQLPPASITKVMTLLLVMEALDSGQIALGDMVTCSEHA 103

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   S+++ K     + +  + A    SAND S A  E ++GSE+ F  LM+ KA ++G
Sbjct: 104 QSMGGSQIWFKAGEQLSVDDLLKAAAISSANDASVALAEHVAGSEEAFVALMNEKAAQLG 163

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIITNHN 228
           M NT + NA+GL     +TTARD A +   L   +P+  +Y      + R     + N N
Sbjct: 164 MTNTHFVNATGLDADGHLTTARDIAAMSRALL-AYPKITEYSGTWMSELRGGATQLVNTN 222

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           KL+       G+KTG T  +G  +  S       ++AV +G PTS ER   A  L+    
Sbjct: 223 KLVRFYDGCTGLKTGTTDGAGSCLSASATRGGLSLIAVTLGSPTSAERFSAARGLLDYGF 282

Query: 289 EKKTLKHQQTHRKDNLSSTSLKKSL 313
              T    +    + L+   ++  +
Sbjct: 283 ANYT--RVELPPLEELAPVPVRGGV 305


>gi|167759038|ref|ZP_02431165.1| hypothetical protein CLOSCI_01385 [Clostridium scindens ATCC 35704]
 gi|167663445|gb|EDS07575.1| hypothetical protein CLOSCI_01385 [Clostridium scindens ATCC 35704]
          Length = 435

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 80/293 (27%), Positives = 142/293 (48%), Gaps = 11/293 (3%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I+++ +  Q+   K  DE R PAS+TK+MTL +IF+ L S K+ L  ++  S+ AA
Sbjct: 82  APSAILMEASTGQIIYEKDADEQRPPASVTKIMTLLLIFDALDSGKISLKDEVSTSEYAA 141

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S+++L+     T +  I  +   SAND   A  E+I G+E++F   M+ +AK +GM
Sbjct: 142 SMGGSQVFLEPGETQTVDTMIKCIAVASANDACVAMAEYICGNEEEFVKQMNQRAKGLGM 201

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-------- 223
           +NT + N +GL     +TTARD A++   L   +PQ + Y  I      +          
Sbjct: 202 ENTHFVNCNGLDTDGHLTTARDIALMSRELITTYPQIHDYSMIWMENITHTTKKGTTEFG 261

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           +TN NKL+ +     G+KTG T  + + +  + +     ++AV+M  P  ++R   A  L
Sbjct: 262 LTNTNKLVRQYEYATGLKTGSTDKAKYCVSATAKKDGMELIAVIMAAPDHKQRFTDATTL 321

Query: 284 ITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
           +     K      +  +  ++    + + +      R  + F  +D      +
Sbjct: 322 LNYGFGKC--NKYEEEKAKSIQPAKVSRGVAETVKVRQKTPFAYVDITGADLK 372


>gi|86749513|ref|YP_486009.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris HaA2]
 gi|86572541|gb|ABD07098.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris HaA2]
          Length = 573

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 108/241 (44%), Positives = 157/241 (65%), Gaps = 1/241 (0%)

Query: 51  KPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
            P ++SI++D N          D  R+PASLTK+MTLY++FE L++ KL L++++ VS  
Sbjct: 50  NPAFASIIVDANTGATLSATNPDAVRHPASLTKIMTLYLLFERLEAGKLSLDSEMEVSAH 109

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A++Q P+KL L+       E  I AL+TRSAND +    E + GSE +FA +M+ KA+ +
Sbjct: 110 ASSQAPTKLGLRPGQTLRVEDAIKALVTRSANDAAVVIAETVGGSEAEFARMMTRKARAL 169

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM  T+Y+N++GL + +Q+TTARDQ+ILG  ++  FP+YY+YF+   F YR   I NHN+
Sbjct: 170 GMSRTVYRNSNGLPNDDQVTTARDQSILGRAIQDRFPRYYRYFATTTFNYRGASIRNHNR 229

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           LL  +  +DGIKTGYTR SGFN+VTS+   +  +V VV+G  +   RD     L+   LE
Sbjct: 230 LLGNVEGVDGIKTGYTRASGFNLVTSMHRGNRFLVGVVLGGRSGGSRDAIMRNLLAENLE 289

Query: 290 K 290
           K
Sbjct: 290 K 290


>gi|329929847|ref|ZP_08283523.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5]
 gi|328935825|gb|EGG32286.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5]
          Length = 396

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 155/333 (46%), Gaps = 27/333 (8%)

Query: 29  QLMGKILFLSIIMISMA----------------SELHAKPKYSSIVIDVNKNQMTGFKQ- 71
            L+   L L++ + S A                 E  A    S+I++D +   +   K  
Sbjct: 4   ALIAGFLVLAVGLSSAAVPSYAEENSKPGGGSSQEELAPSARSAILLDADTGTIIYEKNS 63

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
            +   PAS+TK+MT+ +  E +   +L L  ++  S+ AA+   S+++L+     T ++ 
Sbjct: 64  HDKLPPASITKVMTMLLTMEAIDEGQLKLTDKVRTSEYAASMGGSQIFLEPGEEMTVDEM 123

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +   S ND S A  E I+GSE+ F  +M+ KA ++GM++T + N +GL  +N  T+A
Sbjct: 124 LKGIAMASGNDASVAMAEKIAGSEEGFVKMMNEKAAELGMKDTHFVNCNGLPAENHYTSA 183

Query: 192 RDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
            D A++   L K + Q  KY       +RK   +   + N NKL+      DG+KTGYT 
Sbjct: 184 HDIAVMSRELLK-YDQITKYTGAYQDYLRKDSEKPFWLVNTNKLVRFYTGADGLKTGYTS 242

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSS 306
            + F +  + +      VAVVMG P ++ R+ +   +      + T+ H      + L  
Sbjct: 243 EAKFCLSATAKRDGLRAVAVVMGAPDTKTRNNEVSRMFDYAFSQYTM-HSIYKPGEVLGI 301

Query: 307 TSLKKSLMIK---KLKRTYSQFKKIDAKAHSTQ 336
             ++K  + +   + ++ YS   K   K    +
Sbjct: 302 VKVQKGNVPEISIQAEKDYSVLVKKGVKNPDIR 334


>gi|241203383|ref|YP_002974479.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240857273|gb|ACS54940.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 427

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 102/261 (39%), Positives = 165/261 (63%), Gaps = 3/261 (1%)

Query: 35  LFLSIIMISMA--SELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFE 91
           L+ +++ +++A  + L A    +S+++D    ++   +  +   +PASLTKMMTLY+ FE
Sbjct: 4   LWAAVLTVTLAVSAPLAALAGNASLILDARTGKVLAAENADTLNHPASLTKMMTLYLTFE 63

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            L+  K+  +T I +SK AA++ P+KL +K     T  + +  +I +SAND ++A GE +
Sbjct: 64  ALKRGKIAWDTPIKMSKYAASRPPTKLGVKAGGTITVREAVYGMIVKSANDAASAMGEKL 123

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  FA +M+ KA+++GM  T++ NASGL D  Q+TTARD + L I L KN+P  Y+ 
Sbjct: 124 AGSESGFARVMTAKARQLGMSRTVFVNASGLPDGRQVTTARDMSTLAIALMKNYPNEYRL 183

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           FS   F +R R +  HN L+ +   +DGIKTGYT  SGFN+V+++R  +  +V VV+G  
Sbjct: 184 FSTASFNFRGRTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVVGVVLGGR 243

Query: 272 TSQERDQKALELITSFLEKKT 292
           T++ RD K   L+  +L + +
Sbjct: 244 TARSRDAKMAGLLDRYLGRAS 264


>gi|332527505|ref|ZP_08403557.1| serine-type D-Ala-D-Ala carboxypeptidase [Rubrivivax
           benzoatilyticus JA2]
 gi|332111912|gb|EGJ11890.1| serine-type D-Ala-D-Ala carboxypeptidase [Rubrivivax
           benzoatilyticus JA2]
          Length = 381

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 79/271 (29%), Positives = 147/271 (54%), Gaps = 13/271 (4%)

Query: 31  MGKILFLSIIMISMASELHAK--PKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
           M ++L L++      +   A   P+ ++   I+IDV+ NQ+   +  D P  PASLTK+M
Sbjct: 1   MKRLLSLALAFFVAGAHAQAPVPPEVAARQYILIDVSANQVLAERDADTPADPASLTKLM 60

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSAN 141
           + Y++F  ++  KL L+ ++PVS  A  +     S +++  +     ++ +  +I +S N
Sbjct: 61  SAYLVFNAVRDGKLALDQRVPVSTRAWDERKYGGSLMFIDTRMQPRVDELLRGMIVQSGN 120

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D + A  E + G+ + F  +M+ +A+  G++NT ++N SGL +    TT R+ A +   +
Sbjct: 121 DATVALAEAVGGTVENFVAMMNKQAQAWGLKNTQFRNPSGLTEAGHKTTPREIAYIATRI 180

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK-- 259
            ++ PQ+Y  +S R F + N    N N LL +  ++DG+KTGYT  +G+ +V S +    
Sbjct: 181 IQDHPQFYPIYSERAFAFNNIRQDNRNLLLGRDPSVDGMKTGYTEAAGYCLVASAQRDMP 240

Query: 260 --DDPIVAVVMGMPTSQERDQKALELITSFL 288
                +++VVMG  + Q R  ++ +L+    
Sbjct: 241 NGKRRLLSVVMGTASMQARANESQKLLNWGY 271


>gi|291559238|emb|CBL38038.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
           SSC/2]
          Length = 399

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 93/325 (28%), Positives = 158/325 (48%), Gaps = 19/325 (5%)

Query: 26  RNIQLMGKILFLSIIMISMASEL----HAKP-----KYSSIVIDVNKNQMTGFKQ-DEPR 75
           + I L+  IL  S     MA E      A P       S++V++    ++   K  D+  
Sbjct: 5   KAILLVAAILVQSFYCPVMAREARFLETAAPVLDLSAKSAVVMEQESKEILFAKDKDKEL 64

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
            PAS+TK+M+L +IFE L+  K+ L   + VS+ AA+   S+++L+       +  I  +
Sbjct: 65  APASVTKIMSLLLIFEDLKQGKIKLTDTVTVSEHAASMGGSQVFLETGEKQQVQTLIKCV 124

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  SAND   A  E + GSE+ F   M+ KA+++GM++T ++NA GL  K  +T+A D A
Sbjct: 125 VISSANDAVVALAEHVCGSEEAFVSRMNKKARELGMKHTTFQNACGLDAKGHVTSAYDIA 184

Query: 196 ILGILLRKNFPQYYKYFSIRKFRY--------RNRIITNHNKLLNKMHNIDGIKTGYTRN 247
           ++   L + +P+ +KY  I             +   ++N NKL+ + H   G+KTG T  
Sbjct: 185 LMTRELAQRYPEVFKYTKIWMDTIIHKTKKGEKEFGLSNTNKLIRQYHGCTGMKTGSTGK 244

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSST 307
           +GF +  +       ++AVVMG  +S+ R + A  L+          H +T RK+ +   
Sbjct: 245 AGFCLSATATRNKIHMIAVVMGCESSKARIKDARILLDYGFSNCQRIHSETTRKE-IGRI 303

Query: 308 SLKKSLMIKKLKRTYSQFKKIDAKA 332
            ++K    +   +       ID K 
Sbjct: 304 PVQKGQRSEVSCQEKVTADLIDIKT 328


>gi|319896451|ref|YP_004134644.1| d-alanyl-d-alanine carboxypeptidase (penicillin-binding protein 5)
           [Haemophilus influenzae F3031]
 gi|317431953|emb|CBY80301.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Haemophilus influenzae F3031]
          Length = 393

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 87/287 (30%), Positives = 150/287 (52%), Gaps = 18/287 (6%)

Query: 33  KILFLSIIMISMASELHA--------KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASL 80
           KI FLS  +   A  + A         P+ ++   +++D N   +      D+ +YPASL
Sbjct: 7   KIAFLSSFVALSAFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASL 66

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALIT 137
           TKMMT Y++   L+  K+H    + + ++A  +N    SK++L   T  +       +I 
Sbjct: 67  TKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIV 126

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND + A  E ISG+   F   M+   ++ G++NT +    GL D NQ ++ARD AI+
Sbjct: 127 VSGNDATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAII 186

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
           G  + ++ P+ YK +S + F +      N N LL  K  N+DG+KTG+T  +G+N+V S 
Sbjct: 187 GAHIIRDLPEEYKIYSEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSRAGYNLVASA 246

Query: 257 -RYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHRK 301
               +  +++VVMG+PT + R+ ++ +L+       +T K  +  ++
Sbjct: 247 TTSNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKE 293


>gi|77464261|ref|YP_353765.1| penicillin-binding protein [Rhodobacter sphaeroides 2.4.1]
 gi|77388679|gb|ABA79864.1| Probable penicillin-binding protein [Rhodobacter sphaeroides 2.4.1]
          Length = 501

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 98/265 (36%), Positives = 145/265 (54%), Gaps = 3/265 (1%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLY 87
           Q + ++LF+ + M+  A    A P Y++IV+D    +       E R +PASLTKMMTLY
Sbjct: 34  QYVRQVLFVFVAMVMAAQSAVAAP-YAAIVMDARTGETLYETNSETRLHPASLTKMMTLY 92

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           I F+ +Q  ++ L++ + V+K AA + PSKL LK          I A   +SAND +TA 
Sbjct: 93  ITFQAIQRGEISLDSLVTVTKNAAAEPPSKLGLKSGQRIALRYLIRAAAVKSANDAATAI 152

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E + GSE  FA  M+  AK IGM  T +KN +GL  +  ++TA D  +LG  L  +FPQ
Sbjct: 153 CEAVGGSEAAFAERMNRTAKAIGMTKTTFKNCNGLTAEGHLSTAHDMNVLGRRLFFDFPQ 212

Query: 208 YYKYFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           YY  FS R+       + N N + L+     DGIKTGYT  +G+N+  S +  +  I+A 
Sbjct: 213 YYNIFSRRRADAGVTTVANTNTRFLDAYKGADGIKTGYTSPAGYNLTASAQRGNKRIIAT 272

Query: 267 VMGMPTSQERDQKALELITSFLEKK 291
           V G  ++  R+ K  +L+     + 
Sbjct: 273 VFGGKSTAHRNAKMADLLDLGFREA 297


>gi|326791361|ref|YP_004309182.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
           DSM 5427]
 gi|326542125|gb|ADZ83984.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
           DSM 5427]
          Length = 396

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 83/323 (25%), Positives = 153/323 (47%), Gaps = 26/323 (8%)

Query: 28  IQLMGKILFLSIIMISMAS-----ELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLT 81
           I L+  I+  S +  +        +  A    S I+++ +  ++   +  DEP  PAS+T
Sbjct: 9   IFLLLIIMCCSQVFAAATPKKNTNQTLAATARSYILMEESSGKILLERNADEPLPPASIT 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MTL +I E + + K++   ++ +S+ AA    S+++++     T    +  +   SAN
Sbjct: 69  KVMTLLLINEAVDTGKINWEDKVTISEHAAHMGGSQVFMEPGEEQTVRDLVKCICIASAN 128

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D + A  E+I+GSE++F  LM+ +A ++GM +T++KNA GLH +  ++TARD A++   L
Sbjct: 129 DAAVAMSEYIAGSEEQFVELMNKRAAELGMTHTVFKNACGLHTEGHVSTARDIALMSRAL 188

Query: 202 RKNFPQYYKYFSIRKFRYRNRI--------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
               P+  K  +       +R         ++N NK+L     I G+KTGYT  +   + 
Sbjct: 189 VNGHPEITKTLTTWMDTITHRTRRGESEFGLSNTNKMLKWYKGITGLKTGYTPEAKHCVS 248

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSL 313
            +    +  ++AV+MG    + R Q+A +L+        +K   T               
Sbjct: 249 ATATRDNMGLIAVIMGAADGKTRFQEAGQLLDYGFANYKVKVGPTI------------GT 296

Query: 314 MIKKLKRTYSQFKKIDAKAHSTQ 336
           +I +         KI+     T+
Sbjct: 297 IIGEAPIKKGDVSKINVATKETK 319


>gi|167628449|ref|YP_001678948.1| d-alanyl-d-alanine carboxypeptidase [Heliobacterium modesticaldum
           Ice1]
 gi|167591189|gb|ABZ82937.1| d-alanyl-d-alanine carboxypeptidase [Heliobacterium modesticaldum
           Ice1]
          Length = 386

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 141/300 (47%), Gaps = 13/300 (4%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQDEPR-YP 77
           ++R+   +   +    +   +  +  A P       S++++D     +   K    R  P
Sbjct: 1   MKRSTFRLSLAMVFFFLASLIPVQAWAAPPLETQADSAVLMDPTTGAILFEKNSHKRVAP 60

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MTL + FE ++  K  L+ ++  S+ A     S++YL+          ++++  
Sbjct: 61  ASVTKLMTLLVAFEAIEQGKASLDDKVVTSQRAFEMGGSQIYLEPGEEMVMRDLLISIAV 120

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            SAND   A  E ISGS + +   M+ KA+ +G+++T + N  GL   N  T+A D A++
Sbjct: 121 HSANDACVAVAEHISGSYEAYVDDMNKKAQSLGLKDTHFMNPHGLPVDNHYTSAHDMAVI 180

Query: 198 GILLRKNFPQYYKYFSIRKFRYRN-----RIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
                K  P   ++ +I+  + R        + NHN+LL      DG KTG+T  + + +
Sbjct: 181 AREALK-HPTLMQFVAIKHHKIRESSSKPMQLDNHNRLLWWYPGTDGFKTGWTSEAKYCL 239

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           V+++   +  ++A V G+P  +   +++++L      + T K       + L   ++ K 
Sbjct: 240 VSTVERDNLRLIASVFGVPEIRGHFKESMKLYNYGFSRYTFKS-VAKPGEPLGEVAVGKG 298


>gi|319404375|emb|CBI77978.1| penicillin-binding protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 449

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 111/272 (40%), Positives = 166/272 (61%), Gaps = 1/272 (0%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASL 80
           ++  + + +   +L +         +     KY++IVID N  +          RYPASL
Sbjct: 9   VHCYKKVGIALTVLVIFCSWAIATPKEAYPDKYAAIVIDANTGKTLFQANATLKRYPASL 68

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           TKMMT+Y+IFE +++ ++  NT IP+S  AAT+ P+K+ +K     + E    ALIT+SA
Sbjct: 69  TKMMTVYMIFEAIKNGRVTPNTPIPISNYAATRPPTKIGIKAGQTISIEAATKALITKSA 128

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           NDV+TA GE++ GSE+KFA +M+ KA+ +GM+NT + NASGL D    +TA+D A L + 
Sbjct: 129 NDVATAIGEYLGGSEQKFAQMMTIKARTLGMKNTHFANASGLPDTRNYSTAQDMATLALA 188

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           LR++FP+ YK F    F +R + I NHN L+  +  +DGIKTGYT+ SG N+ TS+R   
Sbjct: 189 LRRHFPEQYKLFKTTHFTFRGQTINNHNTLIKTIKGVDGIKTGYTQMSGSNLATSMRING 248

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
             +VAVVMG  +S  R+     L+  +L K +
Sbjct: 249 RSVVAVVMGGKSSNTRNIHMANLLKQYLPKAS 280


>gi|188534313|ref|YP_001908110.1| D-alanyl-D-alanine carboxypeptidase [Erwinia tasmaniensis Et1/99]
 gi|188029355|emb|CAO97232.1| D-alanyl-D-alanine carboxypeptidase [Erwinia tasmaniensis Et1/99]
          Length = 402

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 80/290 (27%), Positives = 141/290 (48%), Gaps = 12/290 (4%)

Query: 9   SAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTG 68
             KKT L+    +     ++ L    L +S      A         +  ++D +  ++  
Sbjct: 1   MKKKTLLSSAVQTRICTASLLL----LTVSCAWAQDAPVAPQLDAKAWFLMDFHSGKVLA 56

Query: 69  FKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLK 121
               + R  PASLTKMM+ Y+I + L++ K+  +  + V   A        +  S ++LK
Sbjct: 57  ESNADLRLDPASLTKMMSSYVIGQALKAGKIGKDDLVTVGNDAWATGNPVLKGSSLMFLK 116

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
                   +    ++ +S ND S A  ++++GS+  F  LM+N  + +G++NT +K   G
Sbjct: 117 PGDRIAVSELNKGIVIQSGNDASIALADYVAGSQDAFVGLMNNYVQTLGLKNTHFKTVHG 176

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGI 240
           L    Q +TARD A++G  L ++ P  Y     ++F + N    N N+LL   +  +DGI
Sbjct: 177 LDADGQFSTARDMALIGQALIRDVPDEYALHKEKEFTFNNIRQHNRNRLLWSSNLQVDGI 236

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           KTG+T  +G N+V S    D  +++VV+G  T   R +++ +L+T  L  
Sbjct: 237 KTGHTSGAGNNLVASAVEGDRRMISVVLGAATDAVRFRESEKLLTWGLRN 286


>gi|262366391|gb|ACY62948.1| penicillin-binding protein 5 [Yersinia pestis D182038]
          Length = 335

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 85/302 (28%), Positives = 149/302 (49%), Gaps = 22/302 (7%)

Query: 6   IQSSAKKTFLTYPYGSIYIQRNIQ--LMGKILFLSII---------MISMASELHAKPKY 54
           + +   +  +      +   R I+   +G ++ +S           MI    ++ A+   
Sbjct: 13  VLNLLPRDVVVLIMKYVITSRIIKSLALGTVIVMSAANADDVNLKTMIPGVPQIDAE--- 69

Query: 55  SSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           + I+ID N  ++      D  R PASLTKMMT Y+I + ++S K+     + V K A   
Sbjct: 70  AYILIDYNSGKVLAEMNADTRRNPASLTKMMTSYVIGQAIKSGKIGAEDMVTVGKDAWAT 129

Query: 113 -----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                +  S ++LK        +    +  +S ND   A  ++++GS+  F  LM+N  K
Sbjct: 130 GNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQDSFVNLMNNYVK 189

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
            +G+QNT +K   GL  + Q ++ARD A++G  L ++ P  Y  +  ++F + N   TN 
Sbjct: 190 ALGLQNTHFKTVHGLDAEGQFSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQTNR 249

Query: 228 NKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           N LL     N+DGIKTG+T  +G+N+V S       +++VV+G  T + R+ ++ +L+T 
Sbjct: 250 NGLLWDTSLNVDGIKTGHTEAAGYNLVASATDGQMRLISVVLGGHTFKGRETESKKLLTW 309

Query: 287 FL 288
             
Sbjct: 310 GF 311


>gi|89074975|ref|ZP_01161420.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium sp.
           SKA34]
 gi|89049214|gb|EAR54778.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium sp.
           SKA34]
          Length = 391

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 79/290 (27%), Positives = 144/290 (49%), Gaps = 11/290 (3%)

Query: 26  RNIQLMGKILFLSIIMISMA--SELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTK 82
           R++ +   +L  + +  S A   E         I++D N  ++     + E   PASLTK
Sbjct: 9   RSVAISATLLASATVAASPAVVPEAPQIAAKGYILVDYNSGKILAGNNEYEKLAPASLTK 68

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRS 139
           +MT ++I + +++  +  +  + +SK A  +N    SK++L+             +I  S
Sbjct: 69  IMTSFVIGQEIKNGNISPDDTVVISKNAWAKNFPGSSKMFLEVGKSVKVSDLNRGIIVDS 128

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND   A  E ++GS++ F  LM+  AK +GM++T + N  GL   +  TT  D +IL  
Sbjct: 129 GNDACVAMAEHVAGSQESFVDLMNGWAKNLGMKSTHFANVHGLDRPDLYTTPYDLSILTR 188

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY 258
            L ++ P  +K +  + F Y      N N LL  K  ++DG+KTG+T N+G+++V++   
Sbjct: 189 SLIRDLPNEFKIYDEKSFTYNGITQYNRNGLLWDKSMHVDGLKTGHTDNAGYSLVSTATE 248

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLE-KKTL---KHQQTHRKDNL 304
            +  +++VVMG  +   R  ++ +L+       +TL   K  QT   + +
Sbjct: 249 GNMRLISVVMGTASKNARLAESKKLLNFGFRFYETLSPNKKDQTIETEKV 298


>gi|301168630|emb|CBW28220.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Haemophilus influenzae 10810]
          Length = 393

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 86/287 (29%), Positives = 150/287 (52%), Gaps = 18/287 (6%)

Query: 33  KILFLSIIMISMASELHA--------KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASL 80
           KI FLS  +   +  + A         P+ ++   +++D N   +      D+ +YPASL
Sbjct: 7   KIAFLSSFVTLSSFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASL 66

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALIT 137
           TKMMT Y++   L+  K+H    + + ++A  +N    SK++L   T  +       +I 
Sbjct: 67  TKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIV 126

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND + A  E ISG+   F   M+   ++ G++NT +    GL D NQ ++ARD AI+
Sbjct: 127 VSGNDATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAII 186

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
           G  + ++ P+ YK +S + F +      N N LL  K  N+DG+KTG+T  +G+N+V S 
Sbjct: 187 GAHIIRDLPEEYKIYSEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASA 246

Query: 257 -RYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHRK 301
               +  +++VVMG+PT + R+ ++ +L+       +T K  +  ++
Sbjct: 247 TTSNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKE 293


>gi|317047508|ref|YP_004115156.1| beta-lactamase [Pantoea sp. At-9b]
 gi|316949125|gb|ADU68600.1| Beta-lactamase [Pantoea sp. At-9b]
          Length = 401

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 75/244 (30%), Positives = 129/244 (52%), Gaps = 8/244 (3%)

Query: 53  KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + +++D N  ++      D+   PASLTKMMT Y+I + L++ K+H +  + + + A 
Sbjct: 40  AKAWVLMDYNSGKVLAEANADQRLDPASLTKMMTSYVIGQALKAGKIHDDDMVTIGQDAW 99

Query: 112 T------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
                  +  S ++LK        +    ++ +S ND   A  ++++GS+  F  LM+N 
Sbjct: 100 ATGNPKLKGSSLMFLKPGDRIPVAELNKGIVIQSGNDACIAMADYVAGSQDSFIGLMNNY 159

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
           AK  G+QNT +    GL    Q +TARD AI+G  L  + P+ Y     ++F + N    
Sbjct: 160 AKAFGLQNTHFMTVHGLDADGQYSTARDMAIIGQRLISDVPEEYALNKQKEFTFNNIKQM 219

Query: 226 NHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N+LL   +  +DGIKTG+T  +G N+V+S    D  +++VV+G  T   R +++ +L+
Sbjct: 220 NRNRLLWSSNLKVDGIKTGHTSGAGNNLVSSATDGDMRLISVVLGAETDALRFRESEKLL 279

Query: 285 TSFL 288
           T   
Sbjct: 280 TWGF 283


>gi|218680753|ref|ZP_03528650.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli CIAT 894]
          Length = 427

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 100/263 (38%), Positives = 163/263 (61%), Gaps = 3/263 (1%)

Query: 33  KILFLSIIMISMA--SELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYII 89
           + L  +++ +++A  + + A    +S+++D    ++   +  +   +PASLTKMMTLY+ 
Sbjct: 2   RTLLAAVLTVTLAVSAPIAALAGSASLILDARTGKVLAAENADTLNHPASLTKMMTLYLT 61

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           FE L+  K+  +T I +SK AA + P+KL +K     T  + +  +I +SAND ++A GE
Sbjct: 62  FEALKRGKIAWDTPITMSKYAAARPPTKLGVKAGGTITVREAVYGMIIKSANDAASAMGE 121

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            + GSE  FA +M+ KA+++GM  T++ NASGL D  Q+TTARD + L + L KN+P  Y
Sbjct: 122 KLGGSESGFARMMTAKARQLGMSRTVFVNASGLPDGRQVTTARDMSTLAVALMKNYPNEY 181

Query: 210 KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           + FS   F +R R +  HN L+ +   +DGIKTGYT  SGFN+V+++R  +  +V VV+G
Sbjct: 182 RLFSAASFNFRGRTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVVGVVLG 241

Query: 270 MPTSQERDQKALELITSFLEKKT 292
             T++ RD K   L+  +L + +
Sbjct: 242 GRTARSRDDKMAGLLDRYLGRAS 264


>gi|239832060|ref|ZP_04680389.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium
           LMG 3301]
 gi|239824327|gb|EEQ95895.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium
           LMG 3301]
          Length = 469

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 117/266 (43%), Positives = 168/266 (63%), Gaps = 5/266 (1%)

Query: 32  GKILFLSIIMISMA----SELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTL 86
             +L   +   S A      + A  +Y++IVID N  +       D  RYPASLTKMMTL
Sbjct: 18  ATLLLAVVTGCSTASTTIPAIAAGDRYAAIVIDANTGKTLFASNADAQRYPASLTKMMTL 77

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y++FE +Q+ ++  +T+IPVS  AA + P+K+  +       E   LA+IT+SANDV+TA
Sbjct: 78  YMLFEAMQAGRMSKDTRIPVSAYAAARPPTKIGFRPGQSIRAEDAALAMITKSANDVATA 137

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
            GE++ GSE++FA +M+ KA+++GM+NT ++NASGL +  Q TTARD AIL I LR++FP
Sbjct: 138 VGEYLGGSEERFAQMMTAKARRLGMRNTTFRNASGLPNMAQHTTARDMAILSIALRQHFP 197

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
             + YFS R F +R + I  HN+LL ++  +DGIKTGYT  SG+N+ +S+      +VAV
Sbjct: 198 NEFSYFSRRSFVFRGQTINGHNRLLGRVEGVDGIKTGYTNASGYNLASSVSLDGRRLVAV 257

Query: 267 VMGMPTSQERDQKALELITSFLEKKT 292
           VMG  T   RD    +LI  +L   T
Sbjct: 258 VMGGNTGASRDAHMAQLIRKYLPMAT 283


>gi|269139992|ref|YP_003296693.1| D-alanyl-D-alanine carboxypeptidase fraction A [Edwardsiella tarda
           EIB202]
 gi|267985653|gb|ACY85482.1| D-alanyl-D-alanine carboxypeptidase fraction A [Edwardsiella tarda
           EIB202]
 gi|304559825|gb|ADM42489.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda FL6-60]
          Length = 403

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 83/256 (32%), Positives = 136/256 (53%), Gaps = 11/256 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   + I+ID N  ++      DE R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGVPQIDAE---AYILIDYNSGKVLAEHNADERRNPASLTKMMTSYVIGQAMRAGKFG 93

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            N  + V K A        Q  S ++LK     +    I  +   S ND   A  ++++G
Sbjct: 94  ENDVVTVGKDAWATGNPVFQGSSLMFLKPGDQVSVGNLIRGINLVSGNDACVAMADYVAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++  K +G+QNT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVKALGLQNTHFETVHGLDASGQFSSARDMALIGQALIRDVPHEYAIYK 213

Query: 214 IRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F Y N   TN N LL     N+DGIKTG+T ++G+N+V S    +  +++ VMG  T
Sbjct: 214 EKEFTYNNIRQTNRNGLLWDTSMNVDGIKTGHTASAGYNLVASATEGNMRLISAVMGGRT 273

Query: 273 SQERDQKALELITSFL 288
            + R+ ++ +L+T   
Sbjct: 274 FKGRETESKKLLTWGF 289


>gi|317491121|ref|ZP_07949557.1| D-alanyl-D-alanine carboxypeptidase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920668|gb|EFV41991.1| D-alanyl-D-alanine carboxypeptidase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 403

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 83/285 (29%), Positives = 142/285 (49%), Gaps = 19/285 (6%)

Query: 23  YIQRNIQLMGKILFLSIIMI-----------SMASELHAKPKYSSIVIDVNKNQMTGF-K 70
           +  R+I+ +     L+I M+           +M   +      + I+ID N  ++     
Sbjct: 5   FASRSIKRIALSSLLAIGMVNVVHADDVNLKTMIPGVPQIDAEAYILIDYNSGKVLAESN 64

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKT 124
            D  R PASLTKMMT Y+I + +++ K   N  + V + A        +  S ++LK   
Sbjct: 65  ADARRNPASLTKMMTSYVIGQAMKAGKFTENDVVTVGQDAWATGNPVFKGSSLMFLKPGD 124

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
                  I  +  +S ND   A  ++++GS+  F  LM+N  K +G+QNT ++   GL  
Sbjct: 125 RVPVSLLIRGINLQSGNDACVAMADYVAGSQDAFVGLMNNYVKALGLQNTHFQTVHGLDA 184

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTG 243
             Q ++ARD A++G  L ++ P  Y  +  ++F + N    N N LL     N+DGIKTG
Sbjct: 185 DGQYSSARDMALIGQALIRDVPNEYAIYKEKEFTFNNIRQMNRNGLLWDTSMNVDGIKTG 244

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +T ++GFN+V S       +++ V+G  TS+ R+ ++ +L+T   
Sbjct: 245 HTESAGFNLVASATEGQMRLISAVLGGHTSKGRESESKKLLTWGF 289


>gi|260597057|ref|YP_003209628.1| D-alanyl-D-alanine carboxypeptidase fraction A [Cronobacter
           turicensis z3032]
 gi|260216234|emb|CBA29137.1| D-alanyl-D-alanine carboxypeptidase dacA [Cronobacter turicensis
           z3032]
          Length = 370

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 147/306 (48%), Gaps = 22/306 (7%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   + I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 4   MIPGVPQIDAE---AYILIDYNSGKVLAEQNADARRDPASLTKMMTSYVIGQAMKAGKFK 60

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            +  + +   A        +  S ++LK        Q I  +  +S ND   A  ++++G
Sbjct: 61  ESDVVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYVAG 120

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 121 SQDAFVGLMNSYVTALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYR 180

Query: 214 IRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +     TN N LL     N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 181 EKEFTFNGIRQTNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 240

Query: 273 SQERDQKALELITS---FLEK-KTLKHQQ-------THRKDNLSSTSLKKSLMIKKLKRT 321
            + R+ ++ +L+T    F E    LK  +           ++ +S  + K + +   +  
Sbjct: 241 FKGREAESKKLLTWGFRFFETVNPLKAGKEFASEPAWFGDNDRASLGVDKDIYLTIPRGR 300

Query: 322 YSQFKK 327
               K 
Sbjct: 301 MKDLKA 306


>gi|300722494|ref|YP_003711784.1| D-alanyl-D-alanine carboxypeptidase [Xenorhabdus nematophila ATCC
           19061]
 gi|297629001|emb|CBJ89586.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
           [Xenorhabdus nematophila ATCC 19061]
          Length = 402

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 82/326 (25%), Positives = 151/326 (46%), Gaps = 23/326 (7%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           + ++  +   + +LS + +  A +  A P     + +++D    ++      DE   PAS
Sbjct: 10  VIKSFAVGLSVFWLSSVNV-YAMDEPAVPEIDARAYVLMDYYSGKILASNNADERLDPAS 68

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGIL 133
           LTKMMT Y+I   ++S K+     + + K A        +  S ++LK            
Sbjct: 69  LTKMMTSYVIGLAVKSGKISTEDWVTIGKDAWATGNPVLKGSSLMFLKPGDRVKVIDLNR 128

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            ++ +S ND S A  ++++GS+  F  LM+  +K +G+ NT +K   GL    Q +TA D
Sbjct: 129 GIVIQSGNDASIALADYVAGSQDSFVDLMNQYSKTLGLTNTHFKTVHGLDAAGQYSTAHD 188

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNI 252
            A+L   + ++ P+ Y     ++F + N    N N+LL  K  N+DG+KTG+T  +GFN+
Sbjct: 189 MALLSQAMIRDVPEEYALNKEKEFTFNNIRQPNRNRLLWNKNMNVDGVKTGHTSGAGFNL 248

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK----KTLKHQQTHRKDNL---- 304
           V S       +++VV+G P+ + R   + +L++         K LK   T   + +    
Sbjct: 249 VASATEGPMRLISVVLGAPSDRMRFSDSEKLLSWGFRFYESAKPLKASDTLMTEKVWYGT 308

Query: 305 ---SSTSLKKSLMIKKLKRTYSQFKK 327
              +   ++K   +   +      K 
Sbjct: 309 HSEAVLGVEKDTSVVVPRGQAGNLKA 334


>gi|126463103|ref|YP_001044217.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126104767|gb|ABN77445.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 474

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 98/265 (36%), Positives = 145/265 (54%), Gaps = 3/265 (1%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLY 87
           Q + ++LF+ + M+  A    A P Y++IV+D    +       E R +PASLTKMMTLY
Sbjct: 7   QYVRQVLFVFVAMVMAAQSAVAAP-YAAIVMDARTGETLYETNSETRLHPASLTKMMTLY 65

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           I F+ +Q  ++ L++ + V+K AA + PSKL LK          I A   +SAND +TA 
Sbjct: 66  ITFQAIQRGEISLDSLVTVTKNAAAEPPSKLGLKSGQRIALRYLIRAAAVKSANDAATAI 125

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E + GSE  FA  M+  AK IGM  T +KN +GL  +  ++TA D  +LG  L  +FPQ
Sbjct: 126 CEAVGGSEAAFAERMNRTAKAIGMTKTTFKNCNGLTAEGHLSTAHDMNVLGRRLFFDFPQ 185

Query: 208 YYKYFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           YY  FS R+       + N N + L+     DGIKTGYT  +G+N+  S +  +  I+A 
Sbjct: 186 YYNIFSRRRADAGVTTVANTNTRFLDAYKGADGIKTGYTSPAGYNLTASAQRGNKRIIAT 245

Query: 267 VMGMPTSQERDQKALELITSFLEKK 291
           V G  ++  R+ K  +L+     + 
Sbjct: 246 VFGGKSTAHRNAKMADLLDLGFREA 270


>gi|323498490|ref|ZP_08103483.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sinaloensis DSM 21326]
 gi|323316379|gb|EGA69397.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sinaloensis DSM 21326]
          Length = 385

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 75/266 (28%), Positives = 136/266 (51%), Gaps = 5/266 (1%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           + L+  + F      ++  +         I++D +   +   K  D    PASLTK+MT 
Sbjct: 8   VTLLTSVSFAGFAAPTIVPDPPVIGAKGYILMDYHTGAVLVEKNADSQLNPASLTKLMTA 67

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDV 143
           Y+  + + +  + L+ Q+ +S+ A  +N    SK++++  T          LI +S ND 
Sbjct: 68  YVAGQEVANGNIGLDDQVTISERAWAKNFPDSSKMFIEVGTQVALSDLYRGLIVQSGNDA 127

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           S A  E ++GSE  F  LM++ A K+G++N+ + N  GL      +T RD A L   + +
Sbjct: 128 SVAIAEHVAGSEGAFVSLMNSWAAKLGLENSAFSNPHGLDSDALYSTPRDIATLSQAIIR 187

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           + P  Y  +S R F Y      N N LL  +  ++DG+KTGYT  +G+++ TS    +  
Sbjct: 188 DLPTIYPLYSERAFTYNGITQYNRNGLLRDRSLHVDGMKTGYTSGAGYSLATSATNGNMR 247

Query: 263 IVAVVMGMPTSQERDQKALELITSFL 288
           +++VVMG  +++ R+ ++ +L++   
Sbjct: 248 LISVVMGSSSTKSRESESKQLLSYGF 273


>gi|229526111|ref|ZP_04415515.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae bv. albensis
           VL426]
 gi|229336269|gb|EEO01287.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae bv. albensis
           VL426]
          Length = 389

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 81/324 (25%), Positives = 153/324 (47%), Gaps = 17/324 (5%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASL 80
             ++ ++  M  +  L    +++  E         ++ID +  ++           PASL
Sbjct: 6   FLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPASL 65

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALIT 137
           TK+MT Y+  + ++   +H   Q+ +S  A  +   + SK++++  TY         LI 
Sbjct: 66  TKLMTSYVAGQEMKRGNIHAGDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLIV 125

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL +    +T  D A+L
Sbjct: 126 QSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIALL 185

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
           G  + ++ P+ Y  +S   F Y      N N LL  +  N+DG+KTGYT  +G+++ +S 
Sbjct: 186 GRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASSA 245

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK----------TLKHQQTHRKDNLSS 306
              +  +++VVMG  + + R+ ++ +L++                 +++Q+    D    
Sbjct: 246 TSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDSVIQNQRLWYGDKNEV 305

Query: 307 TSLKKSLMIKKLKRTYSQFKKIDA 330
                  +   L R  S  KK++A
Sbjct: 306 ALGSADTVYLTLPR--SDVKKLNA 327


>gi|91223153|ref|ZP_01258419.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 12G01]
 gi|91191966|gb|EAS78229.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 12G01]
          Length = 385

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 77/288 (26%), Positives = 141/288 (48%), Gaps = 13/288 (4%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEP-RYPASLT 81
            + L    +   +I +   + +   P        +++D     +           PASLT
Sbjct: 2   KVSLARWTIVTCLISVPTFAVVTPNPPQLQAKGYVLMDFQSGAIIAEYNGRAGLAPASLT 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITR 138
           K+MT Y++ + +++ +L  +  + VS+ A +      SK+++K K   +    +  +I +
Sbjct: 62  KLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAKFPGSSKMFIKPKDEISVANLMRGVIIQ 121

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND   A  E ++GSE+ F  LM+  A+K+G+Q+T + N+ GL      T+  D A L 
Sbjct: 122 SGNDACVALAEHVAGSERGFVALMNGWAEKLGLQDTYFVNSHGLDSDGIQTSPTDMARLM 181

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLR 257
             +  + P  Y  +S + F++ +    N NKLL     ++DG KTGYT N+G+++V+S +
Sbjct: 182 QSIISDVPDVYALYSEKVFKWNDITQYNRNKLLWDNSIDVDGGKTGYTSNAGYSLVSSAK 241

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFL----EKKTLKHQQTHRK 301
                +++VVMG P+ Q R  ++  L++        K+  K  Q   K
Sbjct: 242 EGRMRLISVVMGTPSKQARISQSKNLLSYGFRFYDTKQVAKQGQVESK 289


>gi|126739529|ref|ZP_01755221.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp.
           SK209-2-6]
 gi|126719175|gb|EBA15885.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp.
           SK209-2-6]
          Length = 493

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 94/248 (37%), Positives = 142/248 (57%), Gaps = 2/248 (0%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
              Y+++V+D    ++   +  D   +PASLTKMMTLYI FE +++ ++ L+T++ +SK 
Sbjct: 2   AAPYAAMVLDARTGEVLHSRNADTRLHPASLTKMMTLYIAFEAIRNGEISLDTKVRISKN 61

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           AA + PSKL L+          I A   +SAND +TA GE +SGSE  FA  M+  AK +
Sbjct: 62  AAAEPPSKLGLRSGQRIALRYLIRAAAVKSANDAATAIGEALSGSEAAFARRMTRTAKAL 121

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN- 228
           GM  T +KNA GL +   ++TARD   LG  +  ++P+YY  FS +      + + N N 
Sbjct: 122 GMSRTSFKNAHGLTESGHMSTARDMTTLGRHILYDYPEYYNLFSRKTADAGVKTVPNTNR 181

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +LL      DGIKTGYTR +GFN+V S +  ++ I+A V G  +S  R+ K  EL+    
Sbjct: 182 RLLAAYKGADGIKTGYTRAAGFNLVASAKRGNERIIATVFGGKSSTSRNAKVAELLDLGF 241

Query: 289 EKKTLKHQ 296
            +   + +
Sbjct: 242 RRAPSRAK 249


>gi|167040213|ref|YP_001663198.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X514]
 gi|300914297|ref|ZP_07131613.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X561]
 gi|307724467|ref|YP_003904218.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X513]
 gi|166854453|gb|ABY92862.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X514]
 gi|300889232|gb|EFK84378.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X561]
 gi|307581528|gb|ADN54927.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X513]
          Length = 382

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 82/322 (25%), Positives = 145/322 (45%), Gaps = 29/322 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           +++ +  +  +L+    +   A    +    ++IV+D    ++   K    + P AS TK
Sbjct: 4   MKKFVLYLFILLYFMSSVKVYAESYPSISAKAAIVMDQETGRVLYEKNPHEKLPMASTTK 63

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MTL +  E     K +LN  + VSK AA+   S ++L        E  +  L+  S ND
Sbjct: 64  IMTLLVALE-----KGNLNDIVTVSKRAASVGGSSIWLSPGEKIDMESLLYGLMLNSGND 118

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILGIL 200
            +TA  E I GS + F  +M+ KA++IG  NT +   SGL     +  TTA D A++   
Sbjct: 119 AATAIAEHIGGSVENFIEIMNQKAREIGAYNTHFVTPSGLDIGIDDHYTTAYDLALITRY 178

Query: 201 LRKNFPQYYKYFSIRKFRYR------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
             + +P++ +  S ++          +R + N NKLL      DG+KTG+T  +G  +V+
Sbjct: 179 AFR-YPKFAEIVSTKEKTIPWEGKEWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVS 237

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK----KTLKHQQTHR-------KDN 303
           S        +AVV+  P   E    +++++     K    K L+  +  +       K+N
Sbjct: 238 SATRDGRRFIAVVLNSPPMWE---DSMKILDYAFSKYKPYKVLEKGELIKKIKVEGGKEN 294

Query: 304 LSSTSLKKSLMIKKLKRTYSQF 325
             S   ++  +I  L+      
Sbjct: 295 SVSVVSERECIIPALEDEKQDV 316


>gi|309972837|gb|ADO96038.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Haemophilus influenzae R2846]
          Length = 393

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 87/287 (30%), Positives = 150/287 (52%), Gaps = 18/287 (6%)

Query: 33  KILFLSIIMISMASELHA--------KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASL 80
           KI FLS  +   A  + A         P+ ++   +++D N   +      D+ +YPASL
Sbjct: 7   KIAFLSSFVALSAFSVFAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASL 66

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALIT 137
           TKMMT Y++   L+  K+H    + + ++A  +N    SK++L   T  +       +I 
Sbjct: 67  TKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIV 126

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND + A  E ISG+   F   M+   ++ G++NT +    GL D NQ ++ARD AI+
Sbjct: 127 VSGNDATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAII 186

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
           G  + ++ P+ YK +S + F +      N N LL  K  N+DG+KTG+T  +G+N+V S 
Sbjct: 187 GAHIIRDLPEEYKIYSEKDFTFNKIKQANRNGLLWDKTINVDGMKTGHTSQAGYNLVASA 246

Query: 257 -RYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHRK 301
               +  +++VVMG+PT + R+ ++ +L+       +T K  +  ++
Sbjct: 247 TTSNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKE 293


>gi|256752045|ref|ZP_05492913.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256749055|gb|EEU62091.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 379

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 83/322 (25%), Positives = 146/322 (45%), Gaps = 29/322 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           +++ I  +  +L+    +   A    +    ++IV+D    ++   K    + P AS TK
Sbjct: 1   MKKFILYLFILLYFMSSVKVYAESYPSISAKAAIVMDQETGRVLYEKNPHEKLPMASTTK 60

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MTL +  E     K +LN  + VSK AA+   S ++L        E  +  L+  S ND
Sbjct: 61  IMTLLVALE-----KGNLNDIVTVSKRAASVGGSSIWLSPGEKIDMESLLYGLMLNSGND 115

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILGIL 200
            +TA  E I GS + F  +M+ KA++IG  NT +   SGL     +  TTA D A++   
Sbjct: 116 AATAIAEHIGGSVENFIEIMNQKAREIGAYNTHFVTPSGLDIGIDDHYTTAYDLALITRY 175

Query: 201 LRKNFPQYYKYFSIRKFRYR------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
             + +P++ +  S ++          +R + N NKLL      DG+KTG+T  +G  +V+
Sbjct: 176 AFR-YPKFAEIVSTKEKTIPWEGREWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVS 234

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK----KTLKHQQTHR-------KDN 303
           S   +    +AVV+  P   E    +++++     K    K L+  +  +       K+N
Sbjct: 235 SASREGRRFIAVVLNSPPMWE---DSMKILDYAFSKYKPYKVLEKGELIKKIKVEGGKEN 291

Query: 304 LSSTSLKKSLMIKKLKRTYSQF 325
             S   ++  +I  L+      
Sbjct: 292 SVSVVSERECIIPALEDEKQDV 313


>gi|145633414|ref|ZP_01789144.1| hypothetical protein CGSHi3655_04260 [Haemophilus influenzae 3655]
 gi|145635213|ref|ZP_01790917.1| penicillin-binding protein 5 precursor [Haemophilus influenzae
           PittAA]
 gi|144985977|gb|EDJ92579.1| hypothetical protein CGSHi3655_04260 [Haemophilus influenzae 3655]
 gi|145267492|gb|EDK07492.1| penicillin-binding protein 5 precursor [Haemophilus influenzae
           PittAA]
          Length = 393

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 85/287 (29%), Positives = 150/287 (52%), Gaps = 18/287 (6%)

Query: 33  KILFLSIIMISMASELHA--------KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASL 80
           KI FLS  +   +  + A         P+ ++   +++D N   +      D+ +YPASL
Sbjct: 7   KIAFLSSFVALSSFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASL 66

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALIT 137
           TK+MT Y++   L+  K+H    + + ++A  +N    SK++L   T  +       +I 
Sbjct: 67  TKIMTSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIV 126

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND + A  E ISG+   F   M+   ++ G++NT +    GL D NQ ++ARD AI+
Sbjct: 127 VSGNDATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAII 186

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
           G  + ++ P+ YK +S + F +      N N LL  K  N+DG+KTG+T  +G+N+V S 
Sbjct: 187 GAHIIRDLPEEYKIYSEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASA 246

Query: 257 -RYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHRK 301
               +  +++VVMG+PT + R+ ++ +L+       +T K  +  ++
Sbjct: 247 TTSNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKE 293


>gi|225570661|ref|ZP_03779684.1| hypothetical protein CLOHYLEM_06761 [Clostridium hylemonae DSM
           15053]
 gi|225160488|gb|EEG73107.1| hypothetical protein CLOHYLEM_06761 [Clostridium hylemonae DSM
           15053]
          Length = 423

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 138/299 (46%), Gaps = 11/299 (3%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A+        S+++++ +  Q+   K  DE R PAS+TK+MTL +IF+ L+  K+ L+  
Sbjct: 62  AASGLTVSAPSAVLMEASTGQVIYEKDADEQRPPASVTKIMTLLLIFDALKDGKIKLDDS 121

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           +  S+ AA+   S+++L+     T +  I  +   SAND   A  E+I G+E++F   M+
Sbjct: 122 VSTSEFAASMGGSQVFLEPGETQTVDTMIKCIAVASANDACVAMAEYICGNEEEFVKNMN 181

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI 223
            +AK +GM NT + N +GL     +TTARD A++   L   +PQ   Y  I      +  
Sbjct: 182 ERAKGLGMTNTHFVNCNGLDTDGHLTTARDIALMSRELITTYPQIRDYSMIWMENITHTT 241

Query: 224 --------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
                   +TN NKL+ +     G+KTG T  + + +  +       ++AV+M  P  + 
Sbjct: 242 NKGTTEFGLTNTNKLVRQYEYATGLKTGSTDKAKYCVSATAEKNGMELIAVIMAAPDHKA 301

Query: 276 RDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
           R   A  L+     K      +  +  ++   SL + +           F  ID     
Sbjct: 302 RFSDATTLLNYGFGKC--NKYEEDKIASIKPVSLSRGVKKTVKAEQTEPFAYIDTTGAD 358


>gi|17545046|ref|NP_518448.1| penicillin-binding transmembrane protein [Ralstonia solanacearum
           GMI1000]
 gi|17427336|emb|CAD13855.1| probable penicillin-binding (d-alanyl-d-alanine carboxypeptidase)
           transmembrane protein [Ralstonia solanacearum GMI1000]
          Length = 397

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 87/294 (29%), Positives = 157/294 (53%), Gaps = 14/294 (4%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
              + ++ DV   Q+ G    DE   PASLTK+MT Y+  E ++  KL  +  +  ++T 
Sbjct: 40  AARAWMLTDVTSGQVLGGGNVDERIEPASLTKLMTAYLAVEAVRDGKLKYDQMLTPTETV 99

Query: 111 --ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                + S+++L+     +    +  LI +S ND +    E + G+E  F +LM+ +A++
Sbjct: 100 RSVKTDESRMFLQPGKPVSVRDLLQGLIVQSGNDAALVLAEAVGGTETNFVMLMNREAER 159

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           +GM+ T + NA+GL D N  TTARD +IL   L ++FP+ YK++S ++F Y N    N N
Sbjct: 160 LGMKGTHFMNAAGLPDPNHYTTARDLSILTAALIRDFPEDYKFYSQKEFTYNNIKQPNRN 219

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMPTSQERDQKAL 281
           +LL     +DG+KTG+T+++G+ ++TS +            +++V++G  + Q R Q++L
Sbjct: 220 RLLWIDPTVDGVKTGHTKSAGYCLITSAKRPLPDVPNASRRLLSVMIGTKSEQVRTQESL 279

Query: 282 ELITSFLE-KKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
           +++    +   TL+  +   K  L +  + K    K +K   ++ K I     S
Sbjct: 280 KVLNYGYQFFDTLRLYEA--KQALQTPDVYKGQA-KTVKLGVAEDKWITVPKGS 330


>gi|149181665|ref|ZP_01860158.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
           [Bacillus sp. SG-1]
 gi|148850643|gb|EDL64800.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
           [Bacillus sp. SG-1]
          Length = 387

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 84/327 (25%), Positives = 161/327 (49%), Gaps = 28/327 (8%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKY--------SSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           +++  IL L +I  + A    A+ K         S+I+I+ +   +   K   E   PAS
Sbjct: 3   RIISAILMLVLITSAFAPFASAEEKKTELAAGAKSAILIERDTGTVLYDKNSHEKLPPAS 62

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MT+ +I E L   ++    ++  S+ AA+   S+++L+     T ++ +L +   S
Sbjct: 63  MTKIMTMILIMEALDKGQIKWEDEVRTSEYAASMGGSQIFLEPGEVMTVKEMLLGISIGS 122

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AND S A  E I+GSE+ F   M+NK K +G+++T +KN +GL      ++A D A++  
Sbjct: 123 ANDASVAMAEHIAGSEEGFVEKMNNKVKDLGLKDTNFKNPTGLPASEHYSSAHDMAMMAK 182

Query: 200 LLRKNFPQYYKYFSI-----RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
            L K + +  KY        R+   +   + N NKL+     +DG+KTG+T  + + +  
Sbjct: 183 ELLK-YQEITKYTGTYESYLREDTDKKFWLVNTNKLVRFYPGVDGLKTGFTNEAKYCLTA 241

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK----------KTLKHQQTHR---K 301
           + +  +  ++AVV G PT ++R+ +  ++      +           ++   +  +   K
Sbjct: 242 TAKKDNMRVIAVVFGEPTPKDRNAEISKMFDYAFSQYQTQPLFEKGASVGKAEISKGKAK 301

Query: 302 DNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           +  + T+   SL+ KK ++     KK+
Sbjct: 302 EVEAMTNEPISLLAKKGEKLDGIEKKV 328


>gi|209964991|ref|YP_002297906.1| D-alanyl-D-alanine carboxypeptidase [Rhodospirillum centenum SW]
 gi|209958457|gb|ACI99093.1| D-alanyl-D-alanine carboxypeptidase [Rhodospirillum centenum SW]
          Length = 458

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 98/238 (41%), Positives = 145/238 (60%), Gaps = 1/238 (0%)

Query: 53  KYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           KY+SIVID    ++      D   +PAS+TKMMTLY+ F+ L ++KL L+ ++ VS  AA
Sbjct: 60  KYASIVIDAETGEILHAASADTRNFPASMTKMMTLYMTFDALDARKLTLDQRLKVSSRAA 119

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
              PSKL LK      TE  IL+L+T+SAND +    E I G+E +FA +M+++A+ +GM
Sbjct: 120 GMAPSKLGLKPGETIRTEDCILSLVTKSANDCAVVLAEAIGGTETEFARMMTDRARALGM 179

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           + T ++NASGL +  Q++TARD A L   L ++  +YY YFS R+F Y+     NHN+L+
Sbjct: 180 RRTTFRNASGLPNAGQLSTARDMARLAQALIQDHAKYYPYFSTRQFTYKGVTHGNHNRLM 239

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
            +   +DG+KTG+ R SGFN+  S       ++ VV G  T+  RD    +L+    E
Sbjct: 240 ARYRGMDGLKTGFIRASGFNLAASAVRDGRRLIGVVFGGETAVWRDNHMADLLDKAFE 297


>gi|152969235|ref|YP_001334344.1| D-alanyl-D-alanine carboxypeptidase fraction A [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238893699|ref|YP_002918433.1| D-alanyl-D-alanine carboxypeptidase fraction A [Klebsiella
           pneumoniae NTUH-K2044]
 gi|150954084|gb|ABR76114.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding
           protein 5 [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238546015|dbj|BAH62366.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 399

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 78/256 (30%), Positives = 131/256 (51%), Gaps = 11/256 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI  A ++ A+   S I+ID N  ++      D  R PASLTKMMT Y+I + +++ K  
Sbjct: 33  MIPGAPQIDAE---SWILIDYNSGKVLAENNADSRRDPASLTKMMTSYVIGQAMKAGKFK 89

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            +  + V   A        +  S ++LK        Q I  +  +S ND   A  ++++G
Sbjct: 90  ESDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYVAG 149

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+N    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 150 SQDAFVSLMNNYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYR 209

Query: 214 IRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL     N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 210 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 269

Query: 273 SQERDQKALELITSFL 288
            + R+ ++ +L+T   
Sbjct: 270 FKGRESESKKLLTWGF 285


>gi|238785719|ref|ZP_04629693.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia bercovieri ATCC
           43970]
 gi|238713359|gb|EEQ05397.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia bercovieri ATCC
           43970]
          Length = 383

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 77/256 (30%), Positives = 133/256 (51%), Gaps = 11/256 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   + I+ID N  ++      D  R PASLTKMMT Y+I + +++ K+ 
Sbjct: 17  MIPGVPQIDAE---AYILIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGKIG 73

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V K A        Q  S ++LK        +    +  +S ND   A  ++++G
Sbjct: 74  PEDMVTVGKDAWATGNPEFQGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAG 133

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+N    +G++NT +K   GL  + Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 134 SQDSFVNLMNNYVNALGLKNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAIYK 193

Query: 214 IRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F + N    N N LL     N+DGIKTG+T ++G+N+V S       +++ V+G  T
Sbjct: 194 EKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTASAGYNLVASATDGQMRLISAVLGGRT 253

Query: 273 SQERDQKALELITSFL 288
            + R+ ++ +L+T   
Sbjct: 254 YKGRETESKKLLTWGF 269


>gi|145641831|ref|ZP_01797406.1| hypothetical protein CGSHiR3021_01137 [Haemophilus influenzae
           R3021]
 gi|229846948|ref|ZP_04467054.1| penicillin-binding protein 5 precursor [Haemophilus influenzae
           7P49H1]
 gi|145273453|gb|EDK13324.1| hypothetical protein CGSHiR3021_01137 [Haemophilus influenzae
           22.4-21]
 gi|229810032|gb|EEP45752.1| penicillin-binding protein 5 precursor [Haemophilus influenzae
           7P49H1]
          Length = 393

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 87/287 (30%), Positives = 150/287 (52%), Gaps = 18/287 (6%)

Query: 33  KILFLSIIMISMASELHA--------KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASL 80
           KI FLS  +   A  + A         P+ ++   +++D N   +      D+ +YPASL
Sbjct: 7   KIAFLSSFVALSAFSVSAEDMQFGITPPQITAQTYVLMDYNSGAILTALNPDQRQYPASL 66

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALIT 137
           TKMMT Y++   L+  K+H    + + ++A  +N    SK++L   T  +       +I 
Sbjct: 67  TKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIV 126

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND + A  E ISG+   F   M+   ++ G++NT +    GL D NQ ++ARD AI+
Sbjct: 127 VSGNDATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAII 186

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
           G  + ++ P+ YK +S + F +      N N LL  K  N+DG+KTG+T  +G+N+V S 
Sbjct: 187 GAHIIRDLPEEYKIYSEKDFTFNKIKQANRNGLLWDKTINVDGMKTGHTSQAGYNLVASA 246

Query: 257 -RYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHRK 301
               +  +++VVMG+PT + R+ ++ +L+       +T K  +  ++
Sbjct: 247 TTSNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKE 293


>gi|188580422|ref|YP_001923867.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi
           BJ001]
 gi|179343920|gb|ACB79332.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi
           BJ001]
          Length = 499

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 91/267 (34%), Positives = 149/267 (55%), Gaps = 4/267 (1%)

Query: 57  IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V+D    ++   +   +P YPAS+TK+MT Y+  + ++  K+ L+T + VS  AA + P
Sbjct: 31  LVVDAESGKVLYSQGATDPWYPASITKLMTTYVALDMVRQGKVSLDTLLTVSPAAAAEPP 90

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           SK+  K  T  T +  +  ++ +SANDVS A GE + GS + FA +M+  A +IGM+ + 
Sbjct: 91  SKMGFKPGTQITLDNALKIIMVKSANDVSWAIGEGLGGSVEGFADMMNETAHRIGMRESR 150

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           + N +GL +  Q T+ARD AIL   L ++FP     FSI   ++   ++ NHN LL +  
Sbjct: 151 WYNPNGLPEPRQWTSARDMAILARALMRDFPNQQALFSISAIQFGKSVMANHNGLLGRYP 210

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK---T 292
             DG+KTG+  + GFN+V +       I+AVVMG P+++ERD KA +L      +    T
Sbjct: 211 GADGMKTGFICSGGFNVVATATRGGRRIIAVVMGQPSARERDIKAADLFDYGFGQSAGWT 270

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLK 319
               ++    N+++    +  +  K K
Sbjct: 271 APTLESLPPSNVAAPPDMRPYICDKRK 297


>gi|220926507|ref|YP_002501809.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Methylobacterium nodulans ORS 2060]
 gi|219951114|gb|ACL61506.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Methylobacterium nodulans ORS 2060]
          Length = 490

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 85/237 (35%), Positives = 142/237 (59%), Gaps = 1/237 (0%)

Query: 57  IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V+DV+  ++   +   +P YPAS+TK+MT Y+  + ++  +  ++  + +S  AA++ P
Sbjct: 34  LVVDVDSGKVLYSQAATDPWYPASITKLMTTYVALDLVRQGRASMDQLLTISPEAASEPP 93

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           SK+  K  T  T +  +  ++ +SANDV+ A  E ++GS   FA+LM+  A+++GM+++ 
Sbjct: 94  SKMGFKPGTQITLDNALKIIMVKSANDVAWAIAEGLAGSVDNFAVLMNETAQRLGMRDSR 153

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           + N +GL D  Q T+ARD AILG  L ++FP     FSI   ++   ++ NHN LL +  
Sbjct: 154 WVNPNGLPDPRQWTSARDMAILGRALLRDFPDNRDLFSISAIQFGRAVMPNHNGLLGRYA 213

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
            +DG+KTG+    GFN+V S       I+ VVMG PT++ERD KA +L      + +
Sbjct: 214 GVDGMKTGFICAGGFNVVASATRNGRRIITVVMGQPTARERDLKAADLFDYGFGQSS 270


>gi|90424819|ref|YP_533189.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisB18]
 gi|90106833|gb|ABD88870.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisB18]
          Length = 588

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 110/249 (44%), Positives = 161/249 (64%), Gaps = 1/249 (0%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
            P ++SI++D N   +      +  R+PASLTK+MTLY++FE L+S K+ L++++ VS+ 
Sbjct: 53  NPAFASIIVDGNSGDILTANNPDGLRHPASLTKIMTLYLLFERLESGKMQLDSEMDVSEH 112

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A+ Q P+KL L+       E  I AL+TRSAND +    E I+G E  FA LM+ KA+ +
Sbjct: 113 ASIQAPTKLGLRPGQTIRVEDAIKALVTRSANDAAVVISEAIAGDEGDFAKLMTKKARSL 172

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM  T+Y+NASGL D +Q+TTARDQA LG  +++ FP+YY++FS   F YR   I NHN+
Sbjct: 173 GMTRTVYRNASGLPDDDQVTTARDQATLGRAVQERFPRYYRFFSTSVFNYRGNAIRNHNR 232

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           LL  +  +DGIKTGYTR SGFN+VTS+   +  ++ VV+G  +   RD     L+ + L+
Sbjct: 233 LLGSVEGVDGIKTGYTRASGFNLVTSMHRGNRHLIGVVLGGRSGGSRDAIMRNLLAANLD 292

Query: 290 KKTLKHQQT 298
           K + +   T
Sbjct: 293 KASTRRTVT 301


>gi|186474981|ref|YP_001856451.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia phymatum
           STM815]
 gi|184191440|gb|ACC69405.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia phymatum
           STM815]
          Length = 409

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 143/270 (52%), Gaps = 12/270 (4%)

Query: 31  MGKILFLSIIMISMASELHAKP--KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLY 87
           +G  L  +++  +  +++        S +++D   NQ+      DE   PASLTK+MT Y
Sbjct: 28  LGFALPAALVASTAFAQVPPPGVNARSWVLVDATSNQVLASGNPDERVEPASLTKLMTAY 87

Query: 88  IIFEYLQSKKLHLNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           + FE L SKK+ ++  I  S+       + S+++++     T    +  +I +S ND + 
Sbjct: 88  LTFEALASKKITMDQSINPSEAVRRVRNDESRMFIEANKPVTVHDLVYGMIIQSGNDAAI 147

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E + GSE +F  +M+ +A+K+GM+NT + + +G+ D    TTA D AIL   L +++
Sbjct: 148 ALAELVGGSEAQFVNMMNAEAQKLGMKNTHFADVNGMPDPQHYTTAGDLAILSARLIRDY 207

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK------ 259
           P YY  FS+++F Y      N N+LL     +DG+KTG+T+ +G+ ++ S +        
Sbjct: 208 PDYYNIFSVKEFTYNKIKQPNRNRLLWIDPTVDGLKTGHTQAAGYCLIASAKRSLPGVPD 267

Query: 260 -DDPIVAVVMGMPTSQERDQKALELITSFL 288
               +V V+MG     +R Q +L+++    
Sbjct: 268 ASRRLVTVMMGEQKEHDRVQDSLKMLNYGY 297


>gi|16272004|ref|NP_438202.1| penicillin-binding protein 5 [Haemophilus influenzae Rd KW20]
 gi|260580667|ref|ZP_05848494.1| D-alanyl-D-alanine carboxypeptidase dacA [Haemophilus influenzae
           RdAW]
 gi|1169208|sp|P44466|DACA_HAEIN RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA;
           Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
           Full=Penicillin-binding protein 5; Short=PBP-5; Flags:
           Precursor
 gi|1572974|gb|AAC21707.1| penicillin-binding protein 5 (dacA) [Haemophilus influenzae Rd
           KW20]
 gi|260092729|gb|EEW76665.1| D-alanyl-D-alanine carboxypeptidase dacA [Haemophilus influenzae
           RdAW]
          Length = 393

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 87/287 (30%), Positives = 150/287 (52%), Gaps = 18/287 (6%)

Query: 33  KILFLSIIMISMASELHA--------KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASL 80
           KI FLS  +   A  + A         P+ ++   +++D N   +      D+ +YPASL
Sbjct: 7   KIAFLSSFVALSAFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASL 66

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALIT 137
           TKMMT Y++   L+  K+H    + + ++A  +N    SK++L   T  +       +I 
Sbjct: 67  TKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIV 126

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND + A  E ISG+   F   M+   ++ G++NT +    GL D NQ ++ARD AI+
Sbjct: 127 VSGNDATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAII 186

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
           G  + ++ P+ YK +S + F +      N N LL  K  N+DG+KTG+T  +G+N+V S 
Sbjct: 187 GAHIIRDLPEEYKIYSEKNFTFNKIKQANRNGLLWDKTINVDGMKTGHTSQAGYNLVASA 246

Query: 257 -RYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHRK 301
               +  +++VVMG+PT + R+ ++ +L+       +T K  +  ++
Sbjct: 247 TTSNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKE 293


>gi|218529374|ref|YP_002420190.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           chloromethanicum CM4]
 gi|218521677|gb|ACK82262.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           chloromethanicum CM4]
          Length = 496

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 96/295 (32%), Positives = 160/295 (54%), Gaps = 9/295 (3%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLY 87
           +L+G +  L + M   AS + A      +V+D    ++   +   +P YPAS+TK+MT Y
Sbjct: 8   RLIGSLTALGL-MAGAASAVTAP----ILVVDAESGKVLYSQGATDPWYPASITKLMTTY 62

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           +  + ++  K+ L+T + VS  AA + PSK+  K  T  T +  +  ++ +SANDVS A 
Sbjct: 63  VALDMVRQGKVSLDTLLTVSPAAAAEPPSKMGFKPGTQITLDNALKIIMVKSANDVSWAI 122

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
           GE + GS + FA +M+  A +IGM+ + + N +GL +  Q T+ARD A+L   L ++FP 
Sbjct: 123 GEGLGGSVEGFADMMNETAHRIGMRESRWYNPNGLPEPRQWTSARDMAVLARALMRDFPN 182

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
               FSI   ++   ++ NHN LL +    DG+KTG+  + GFN+V +       I+ VV
Sbjct: 183 QQNLFSISAIQFGKSVMANHNGLLGRYPGADGMKTGFICSGGFNVVATATRGGRRIITVV 242

Query: 268 MGMPTSQERDQKALELITSFLEKK---TLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
           MG P+++ERD KA +L      +    T    ++    N+++    +  +  K K
Sbjct: 243 MGQPSARERDIKAADLFDYGFGQSAGWTAPTLESLPPSNVAAPPDMRPYICDKRK 297


>gi|325661128|ref|ZP_08149755.1| hypothetical protein HMPREF0490_00488 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472635|gb|EGC75846.1| hypothetical protein HMPREF0490_00488 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 394

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 85/334 (25%), Positives = 158/334 (47%), Gaps = 25/334 (7%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMISMAS-------ELHAKPK-------YSSIVIDVNKNQ 65
           GS  ++  + ++  ++  +  + +M         E+ ++ K        S+++++ +  +
Sbjct: 11  GSCKMRTILAVVLSVILCTGTVCAMPPDGKVLQEEVESEKKNELELTAQSAVLMEASTGK 70

Query: 66  MTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKT 124
           +   KQ +E R PAS+TK+MT+ +I + ++  K+ L  ++ VS+ AA+   S+++L+   
Sbjct: 71  IIYEKQKEEERPPASVTKVMTMLLILDAVEDGKIKLEDEVTVSEYAASMGGSQVFLEPGE 130

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
             T +  +  +   SAND   A  E+ISGSE+ F   M+ +AK +GM++T + N +GL  
Sbjct: 131 VQTVDTMLKCIAVASANDACVAMSEYISGSEEAFVEQMNARAKGLGMEHTHFVNCNGLDA 190

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--------ITNHNKLLNKMHN 236
              +TTA D A++   L    P+  KY  I      ++         ++N NKL+     
Sbjct: 191 DGHLTTAYDIALMSRELITKHPEIEKYSMIWMENITHKTNKGTSEFGLSNTNKLVRHYPY 250

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQ 296
             G+KTG T  + F I  + R     ++AV+M  P S+ R + A  L+     K T    
Sbjct: 251 ATGLKTGSTSKAKFCISATARKDGMDLIAVIMAAPDSKMRVKDATTLLNYGFGKCT--KY 308

Query: 297 QTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
               K  L +  +      K      + F+ +D 
Sbjct: 309 VDKEKGGLKAVKVDGGTKEKVRIEPEAIFQYVDT 342


>gi|257465150|ref|ZP_05629521.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus
           minor 202]
 gi|257450810|gb|EEV24853.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus
           minor 202]
          Length = 392

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 86/298 (28%), Positives = 155/298 (52%), Gaps = 24/298 (8%)

Query: 31  MGKILFLSIIMISMASELHAKP--------------KYSSIVIDVNKNQMTGF-KQDEPR 75
           M K L  S+ + +MA    A                  + I++D N   +      D+ +
Sbjct: 1   MKKTLLKSVSLCAMALSSFAYADVNTDFGISAPQLNAQTYILMDYNSGAVLASLNPDQRQ 60

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGI 132
           YPASLTKMMT Y++ + ++  K+  +  + V++ +  Q     S ++L   T  +    +
Sbjct: 61  YPASLTKMMTAYVVGDAIKQGKVRNSDMVTVTENSWAQKFPGSSLMFLDLNTQVSVGDLM 120

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             LI  S ND + A  E  SGS++ F   M+  A++ G++NT +    GL D NQ ++A 
Sbjct: 121 KGLIIVSGNDAAVALAEHTSGSQQAFIDQMNKYAQQFGLKNTYFTTVHGLDDPNQFSSAH 180

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYR-NRIITNHNKLLN-KMHNIDGIKTGYTRNSGF 250
           D AI+G  + ++ P+ YK ++ ++F+Y   +   N N LL  K  N+DG+KTG+T  +G+
Sbjct: 181 DMAIIGAHVIRDQPEEYKIYAEKEFKYNIKKPQPNRNGLLWDKTMNVDGMKTGHTDKAGY 240

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK----KTLKHQQTHRKDNL 304
           N+V S    +  +++VVMG+PT + R+ ++ +L+          K+L   Q  +++++
Sbjct: 241 NLVASATNANTRLISVVMGVPTYKGREVESKKLLQWGFANFETVKSLPAGQAIKEESV 298


>gi|226939903|ref|YP_002794976.1| DacC [Laribacter hongkongensis HLHK9]
 gi|226714829|gb|ACO73967.1| DacC [Laribacter hongkongensis HLHK9]
          Length = 382

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 86/322 (26%), Positives = 160/322 (49%), Gaps = 19/322 (5%)

Query: 24  IQRNIQ--LMGKILFLSIIMISMASELHAKPK-----YSSIVIDVNKNQMTGFKQDEPR- 75
           +++ I   L   +LF S   ++  +     P       + IV D    Q    +    R 
Sbjct: 1   MKKLIAASLSTALLFTSSWALAEGTAGFVPPAPDIAGKAYIVNDFYSGQTLASRDPNTRI 60

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
            PASLTK+MT Y+ F+ ++  +L     +  S+ A     S+++L  +T  +    +  +
Sbjct: 61  EPASLTKLMTAYLTFKAIKEGRLKGEQMLQPSEKAWRTEGSRMFLDLRTPVSVNDLMRGM 120

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I +S ND      E I GSE+ FA +M+ +AK++GM  + + N++GL D N   T RD  
Sbjct: 121 IVQSGNDACVTLAEAIGGSEEVFAQMMNREAKRLGMTGSNFTNSTGLPDPNLYMTVRDLG 180

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           IL   L  ++P++Y  +S+++F Y      N N LL +  ++DG+KTG+T ++GFN+V+S
Sbjct: 181 ILSGALIHDYPEFYPIYSMKEFTYNKIKQPNRNLLLYRDPSVDGLKTGHTASAGFNLVSS 240

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLE----------KKTLKHQQTHRKD-NL 304
            +  D  +++VV+G  + + R  ++ +L+   L+           +++   + ++ D N 
Sbjct: 241 AKRDDRRVISVVVGTTSPEARAVESSKLLNYGLQFFDTPRLYQANQSVSTLRVYKGDAND 300

Query: 305 SSTSLKKSLMIKKLKRTYSQFK 326
            +      + +   K   S+ K
Sbjct: 301 VNVGFADDVYVTVPKGAASRIK 322


>gi|312135356|ref|YP_004002694.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor
           owensensis OL]
 gi|311775407|gb|ADQ04894.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           owensensis OL]
          Length = 384

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 79/284 (27%), Positives = 140/284 (49%), Gaps = 14/284 (4%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I++D +  ++   K   E   PAS+TK+MT+ +I E ++  ++ L+ ++  S+ A+
Sbjct: 39  AKSAILVDFDTGKILYEKNSHEKLPPASITKIMTMILICEAIEKGRIKLSDKVIASQNAS 98

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S++YLKE    T E+ + ++   SAND   A  E I+GS ++F  +M+ KAK++GM
Sbjct: 99  SLGGSQIYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYIMNKKAKELGM 158

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKN-FPQYYKYFSIRKFRYRNRIITNHNKL 230
            +T + N  GL  +N  T+A D AI+   L K+   + Y    +   R     +TN NKL
Sbjct: 159 LDTNFVNPYGLDAENHYTSAYDVAIMSRELLKHKIIRKYLTTWVDTIREGKFGLTNTNKL 218

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +       G+KTG T  + F +  S       ++AV+MG P S+ R   A++L+      
Sbjct: 219 VRFYKGCTGVKTGSTDKAKFCVSASALRNGLHLIAVIMGAPDSKTRFNDAVKLLDWGFAN 278

Query: 291 KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
            ++             +   K     K+K      K+++    +
Sbjct: 279 FSMY------------SPYSKGFCFGKVKVRNGIEKEVEVILST 310


>gi|126725140|ref|ZP_01740983.1| D-alanyl-D-alanine carboxypeptidase family protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126706304|gb|EBA05394.1| D-alanyl-D-alanine carboxypeptidase family protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 452

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 104/302 (34%), Positives = 158/302 (52%), Gaps = 9/302 (2%)

Query: 39  IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKK 97
           +  + +A        Y+++VID    ++   +  D   +PASLTKMMTLY+ FE ++  +
Sbjct: 2   LCALFLAPISAIAAPYAAMVIDARSGEVLHSRNADSRLHPASLTKMMTLYVTFEAIRKGE 61

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           + L+T++ +SK AA + PSKL L+          I A   +SAND +TA GE +SGSE  
Sbjct: 62  ISLDTRVRISKKAAAEPPSKLGLQAGQRIQLRYLIRAASVKSANDAATALGEAVSGSEAA 121

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           FA  M+  AK +GM  T +KNA GL +   ++TARD   LG  L  ++PQYY  FS R  
Sbjct: 122 FARRMNRTAKALGMSRTTFKNAHGLTESGHLSTARDMTTLGRRLFFDYPQYYNLFSRRTT 181

Query: 218 RYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
               + + N N + LN     DGIKTGYT  +GFN+V S    ++ I+A V G  ++  R
Sbjct: 182 DAGVKKVNNTNTRFLNSYRGSDGIKTGYTNAAGFNLVASAVRGNERIIATVFGGRSTANR 241

Query: 277 DQKALELITSFLEK-----KTLKHQQTHRKDNLSSTSLKK--SLMIKKLKRTYSQFKKID 329
           + K  EL+     +     K +K       +++ +    K   L++   K    + + I 
Sbjct: 242 NAKVAELLDLGFRRAPSTSKVIKPNAPVYGNDVVAGGKGKTIRLVMAVNKSLRPKSRPIT 301

Query: 330 AK 331
           AK
Sbjct: 302 AK 303


>gi|260777151|ref|ZP_05886045.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606817|gb|EEX33091.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 388

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 85/275 (30%), Positives = 144/275 (52%), Gaps = 12/275 (4%)

Query: 26  RNIQLMGKILFLSIIM----ISMASELHAKPKYSS---IVIDVNKNQMTGFKQDE-PRYP 77
           +   L+   LF SI +    I+  + +   P   +   ++ID N  Q+   K       P
Sbjct: 2   KKTFLLKAALFSSIAVTFNAIAAPTIIPEPPTLGAKGYVLIDYNTGQVLVEKNANTKLNP 61

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           ASLTK+MT Y+  + +++  + L+ Q+ +SK A  +N    SK++++  T          
Sbjct: 62  ASLTKLMTAYVAGQEVKAGNITLDDQVVISKNAWAKNFPDSSKMFIEVGTTVPLMDLYRG 121

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           LI +S ND S A  E+++GSE  F  LM++ A+K+G++NT Y N  GL      +T  D 
Sbjct: 122 LIVQSGNDASVAIAEYVAGSEGAFVNLMNSWAEKLGLENTAYTNPHGLDSNGLYSTPMDI 181

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIV 253
           A LG  + ++ P  Y  +S   + Y      N N LL  +  N+DG+KTGYT  +G+++ 
Sbjct: 182 AKLGQAIIRDLPDIYPLYSETSYTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYSLT 241

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           TS    D  ++AVVMG  +++ R+ ++ +L++   
Sbjct: 242 TSATSGDMRLIAVVMGASSTKSRESESKQLLSYGF 276


>gi|229845375|ref|ZP_04465506.1| penicillin-binding protein 5 precursor [Haemophilus influenzae
           6P18H1]
 gi|229811683|gb|EEP47381.1| penicillin-binding protein 5 precursor [Haemophilus influenzae
           6P18H1]
          Length = 393

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 87/287 (30%), Positives = 150/287 (52%), Gaps = 18/287 (6%)

Query: 33  KILFLSIIMISMASELHA--------KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASL 80
           KI FLS  +   A  + A         P+ ++   +++D N   +      D+ +YPASL
Sbjct: 7   KIAFLSSFVALSAFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASL 66

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALIT 137
           TKMMT Y++   L+  K+H    + + ++A  +N    SK++L   T  +       +I 
Sbjct: 67  TKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIV 126

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND + A  E ISG+   F   M+   ++ G++NT +    GL D NQ ++ARD AI+
Sbjct: 127 VSGNDATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAII 186

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
           G  + ++ P+ YK +S + F +      N N LL  K  N+DG+KTG+T  +G+N+V S 
Sbjct: 187 GAHIIRDLPEEYKIYSEKDFTFNKIKQANRNGLLWDKTINVDGMKTGHTSQAGYNLVASA 246

Query: 257 -RYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHRK 301
               +  +++VVMG+PT + R+ ++ +L+       +T K  +  ++
Sbjct: 247 TTSNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKE 293


>gi|163850650|ref|YP_001638693.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           extorquens PA1]
 gi|163662255|gb|ABY29622.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           extorquens PA1]
          Length = 501

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 96/295 (32%), Positives = 160/295 (54%), Gaps = 9/295 (3%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLY 87
           +L+G +  L + M   AS + A      +V+D    ++   +   +P YPAS+TK+MT Y
Sbjct: 8   RLIGSLTALGL-MAGAASAVTAP----ILVVDAESGKVLYSQGATDPWYPASITKLMTTY 62

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           +  + ++  K+ L+T + VS  AA + PSK+  K  T  T +  +  ++ +SANDVS A 
Sbjct: 63  VALDMVRQGKVSLDTLLTVSPAAAAEPPSKMGFKPGTQITLDNALKIIMVKSANDVSWAI 122

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
           GE + GS + FA +M+  A +IGM+ + + N +GL +  Q T+ARD A+L   L ++FP 
Sbjct: 123 GEGLGGSVEGFADMMNETAHRIGMRESRWYNPNGLPEPRQWTSARDMAVLARALMRDFPN 182

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
               FSI   ++   ++ NHN LL +    DG+KTG+  + GFN+V +       I+ VV
Sbjct: 183 QQNLFSISAIQFGKSVMANHNGLLGRYPGADGMKTGFICSGGFNVVATATRGGRRIITVV 242

Query: 268 MGMPTSQERDQKALELITSFLEKK---TLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
           MG P+++ERD KA +L      +    T    ++    N+++    +  +  K K
Sbjct: 243 MGQPSARERDIKAADLFDYGFGQSAGWTAPTLESLPPSNVAAPPDMRPYICDKRK 297


>gi|161504189|ref|YP_001571301.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865536|gb|ABX22159.1| hypothetical protein SARI_02296 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 403

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 83/289 (28%), Positives = 136/289 (47%), Gaps = 19/289 (6%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNKNQMT 67
             +I+  R +Q M     L    IS A             +      S I+ID N  ++ 
Sbjct: 1   MKTIFSARFMQRMALTTALCATFISTAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVL 60

Query: 68  GFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYL 120
             +  DE R PASLTKMMT Y+I + +++ K      + V   A        +  S ++L
Sbjct: 61  AEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDAWATGNPVFKGSSLMFL 120

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           K        Q I  +  +S ND   A  +F +GS+  F  LM++    +G++NT ++   
Sbjct: 121 KPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVH 180

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
           GL    Q ++ARD A++G  L ++ P  Y  +  ++F +      N N LL     N+DG
Sbjct: 181 GLDADGQYSSARDMALIGQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDG 240

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           IKTG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T   
Sbjct: 241 IKTGHTSKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLTWGF 289


>gi|68248580|ref|YP_247692.1| penicillin-binding protein 5 [Haemophilus influenzae 86-028NP]
 gi|68056779|gb|AAX87032.1| penicillin-binding protein 5 precursor [Haemophilus influenzae
           86-028NP]
          Length = 393

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 87/287 (30%), Positives = 150/287 (52%), Gaps = 18/287 (6%)

Query: 33  KILFLSIIMISMASELHA--------KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASL 80
           KI FLS  +   A  + A         P+ ++   +++D N   +      D+ +YPASL
Sbjct: 7   KIAFLSSFVALSAFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASL 66

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALIT 137
           TKMMT Y++   L+  K+H    + + ++A  +N    SK++L   T  +       +I 
Sbjct: 67  TKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIV 126

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND + A  E ISG+   F   M+   ++ G++NT +    GL D NQ ++ARD AI+
Sbjct: 127 VSGNDATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAII 186

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
           G  + ++ P+ YK +S + F +      N N LL  K  N+DG+KTG+T  +G+N+V S 
Sbjct: 187 GAHIIRDLPEEYKIYSEKDFTFNKIKQANRNGLLWDKTINVDGMKTGHTSQAGYNLVASA 246

Query: 257 -RYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHRK 301
               +  +++VVMG+PT + R+ ++ +L+       +T K  +  ++
Sbjct: 247 TTSNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKE 293


>gi|15603792|ref|NP_246866.1| DacA [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12722361|gb|AAK04011.1| DacA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 394

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 83/300 (27%), Positives = 155/300 (51%), Gaps = 13/300 (4%)

Query: 18  PYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGF-KQDE 73
            + ++  +  I L+  +     ++        A P+ ++   I++D N   +      D+
Sbjct: 1   MFKTVVTKSKIALITGLCIAPSLLAQDIDYGIAVPQLNAQTFILMDYNSGAVIAALNPDQ 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQ 130
            +YPASLTKMMT Y++ + L+  K++   ++ + ++A  +N    SK++L      +   
Sbjct: 61  RQYPASLTKMMTSYVVGDALKQGKINNADRVTIGESAWGKNFPGSSKMFLNLNQQVSVSD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               +I  S ND S A  E ++GS   F   M+  A++ G++NT +    GL + NQ ++
Sbjct: 121 LNRGVIIVSGNDASVAIAEHVAGSVPAFVDAMNKYAQQFGLKNTHFTTVHGLDEDNQYSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
           ARD AI+G  L ++ P+ YK ++ + F +      N N LL  K   +DGIKTG+T  +G
Sbjct: 181 ARDMAIIGAHLIRDLPEEYKIYAEKDFTFNKIKQNNRNGLLWDKSIQVDGIKTGHTDKAG 240

Query: 250 FNIVTSLRY-KDDPIVAVVMGMPTSQERDQKALELITSFL----EKKTLKHQQTHRKDNL 304
           +N+V S     +  +++VVMG+PT + R+ ++ +L+          KTL+  +   + ++
Sbjct: 241 YNLVASATNANNMRLISVVMGVPTIKGREVESKKLLQWGFANFDTFKTLEAGKAISEQSV 300


>gi|163760868|ref|ZP_02167947.1| hypothetical protein HPDFL43_06977 [Hoeflea phototrophica DFL-43]
 gi|162281912|gb|EDQ32204.1| hypothetical protein HPDFL43_06977 [Hoeflea phototrophica DFL-43]
          Length = 441

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 123/286 (43%), Positives = 177/286 (61%), Gaps = 1/286 (0%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEY 92
           + F  + M   +    A  KY+ IV+D    +    +  D+ R+PASLTKMMTLY++FE 
Sbjct: 1   MAFAGLAMALASGAALANSKYAGIVVDAKTGKTLYAYNADQLRFPASLTKMMTLYMVFEA 60

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           L+ +K+ LNT+I  S  AA + P+KL +      T EQ I AL+T+SAND STA  E + 
Sbjct: 61  LEQRKIKLNTRIVFSANAAKEPPTKLGVGTGKSITVEQAIYALVTKSANDASTAVAEHLG 120

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           GSE KFA +M+ KA+ +GM  T ++NA GL +  Q+TTARD A LGI LR++FP+ YKYF
Sbjct: 121 GSEAKFARMMTAKARSLGMSRTTFRNAHGLPNSKQVTTARDMARLGIALREHFPRQYKYF 180

Query: 213 SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           + R F++    ++NHN+LL  +  +DGIKTGYTR SGFN+V+S+  ++  IVAVVMG  T
Sbjct: 181 ATRSFKFGKTRLSNHNRLLGTVRGVDGIKTGYTRASGFNLVSSVVDRNRSIVAVVMGGRT 240

Query: 273 SQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKL 318
              R+ +  +LI  +L K + +           ST    +L + K+
Sbjct: 241 GASRNAQMKKLIAGYLSKASTRGSGNLIARGAPSTISVAALELPKV 286


>gi|297180556|gb|ADI16768.1| d-alanyl-d-alanine carboxypeptidase [uncultured gamma
           proteobacterium HF0010_11B23]
          Length = 368

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 86/262 (32%), Positives = 136/262 (51%), Gaps = 2/262 (0%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYL 93
           + LS I+ +           S ++ + N  ++   F  DEP  PASLTK+MT Y++ +Y+
Sbjct: 1   MVLSFIVSAAIPNPPDLGVGSYVLYEPNTKKVLVSFNADEPVQPASLTKLMTSYVVADYI 60

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           +   + L+    +S  A     S+++++E T       I  +I +S ND S A  E ++G
Sbjct: 61  KEDFIRLDDTPKISIKAWKTEGSRMFIREGTKVAVSDLIKGMIIQSGNDASVALAEHVAG 120

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           SE+ FA LM+  A ++GMQN+ + NASGL D   +T+A D A+L   L  NFP++YK +S
Sbjct: 121 SEENFAYLMNEYASQLGMQNSSFNNASGLPDPLNVTSAYDLALLTSALINNFPEHYKLYS 180

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            + + Y      N N+LL +    DG KTGY   +G+ +V S    D  +VAVV+G    
Sbjct: 181 EKSYTYAGIKQPNRNRLLWRSDIFDGAKTGYHSQAGYCLVGSAMRGDMRLVAVVLGSEDD 240

Query: 274 QERDQKALELITSFLEKKTLKH 295
           + R      L+       T + 
Sbjct: 241 K-RFNDVSALMDYGFRHFTTEK 261


>gi|91977526|ref|YP_570185.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisB5]
 gi|91683982|gb|ABE40284.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisB5]
          Length = 578

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 109/243 (44%), Positives = 156/243 (64%), Gaps = 1/243 (0%)

Query: 51  KPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
            P ++SI++D N          D  R+PASLTK+MTLY++FE L+  KL L++++ VS+ 
Sbjct: 53  NPAFASIIVDANTGATLTATNPDALRHPASLTKIMTLYMLFERLEQGKLQLDSEMEVSEH 112

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A++Q P+KL L+       E  I  L+TRSAND +    E + GSE  FA +M+ KA+ +
Sbjct: 113 ASSQAPTKLGLRPGQSLRVEDAIKGLVTRSANDAAVVIAETVGGSETDFAKMMTRKARAL 172

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM  T+Y+NASGL + +Q+TTARDQ+ILG  ++  FP+YY+YF+   F YR   I NHN+
Sbjct: 173 GMSRTVYRNASGLPNDDQVTTARDQSILGRAIQDRFPRYYRYFATASFNYRGNSIRNHNR 232

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           LL  +  +DGIKTGYTR SGFN+VTS+   +  +V VV+G  +   RD     L+   LE
Sbjct: 233 LLGNVEGVDGIKTGYTRASGFNLVTSMHRGNRFLVGVVLGGRSGGSRDAIMRNLLAENLE 292

Query: 290 KKT 292
           K +
Sbjct: 293 KAS 295


>gi|319785898|ref|YP_004145373.1| beta-lactamase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464410|gb|ADV26142.1| Beta-lactamase [Pseudoxanthomonas suwonensis 11-1]
          Length = 407

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 129/242 (53%), Gaps = 6/242 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + +V+D    Q+   +  DE   PAS+TK+MT Y+I   + + ++  + Q+ +S+ A 
Sbjct: 55  ATAWLVMDYATGQVLAGENVDEQVEPASITKVMTSYVIAAEMAAGRVKPDDQVLMSERAW 114

Query: 112 TQNPSKL-----YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
            +  ++                 +    +  +S ND + A  E ++G+++ FA LM++ A
Sbjct: 115 REGGARTDGSFSGFPVNQTAPLVEMEKGMAVQSGNDAAIALAEHVAGTQEAFADLMNSYA 174

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
            KIGM+N+ + NA GL  +   +TARD A+LG    +++P+ Y Y  I++F        N
Sbjct: 175 AKIGMKNSHFVNAHGLSAEGHYSTARDLALLGRAFVRDYPEQYGYNKIKEFTVNGITQPN 234

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            N LL +  ++DGIKTG+   +G+ +++S +  D  +VAV+MG  + ++R   +L L+  
Sbjct: 235 RNLLLWRDSSVDGIKTGHHSKAGYCLMSSAQRGDQRLVAVLMGGASERQRADDSLALLNW 294

Query: 287 FL 288
             
Sbjct: 295 GF 296


>gi|319761132|ref|YP_004125069.1| beta-lactamase [Alicycliphilus denitrificans BC]
 gi|330822990|ref|YP_004386293.1| beta-lactamase [Alicycliphilus denitrificans K601]
 gi|317115693|gb|ADU98181.1| Beta-lactamase [Alicycliphilus denitrificans BC]
 gi|329308362|gb|AEB82777.1| Beta-lactamase [Alicycliphilus denitrificans K601]
          Length = 387

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 141/263 (53%), Gaps = 9/263 (3%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
           L    I+ + A +       + +++DV   Q+   K  D P   ASLTK+MT Y++F+ L
Sbjct: 16  LMAPAILWAQAPQPPEIAARNYLLVDVTAGQVLAAKDIDAPVEQASLTKLMTGYLVFDAL 75

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           ++KK+ L  ++PVS+ A     S++++  K     +  +  +I +S ND + A  E + G
Sbjct: 76  RAKKITLEQRLPVSERAWKMPGSRMFIDPKMQVPVDDLLKGMIVQSGNDATMALAEGVGG 135

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           + + F  LM+ +AK +GM+NT YKN  GL +    TTARD A L   L ++FP+Y  Y+S
Sbjct: 136 TAENFVRLMNEQAKALGMKNTAYKNPEGLTEPGHTTTARDLATLATRLIQDFPEYMHYYS 195

Query: 214 IRKFRYRNRI---ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-----KDDPIVA 265
            +++RY         N N LL +   +DG+KTG+T  +G+ +V + +          +++
Sbjct: 196 TKQYRYEGTPASNSNNRNTLLFRDPTVDGLKTGHTAAAGYCLVATSKRDFPNVGQRRLLS 255

Query: 266 VVMGMPTSQERDQKALELITSFL 288
           +V+G  +   R  ++ +L+    
Sbjct: 256 IVLGAASENSRANESQKLLNWGY 278


>gi|307267584|ref|ZP_07549057.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306917391|gb|EFN47692.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 427

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 85/324 (26%), Positives = 148/324 (45%), Gaps = 29/324 (8%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASL 80
           + +++ I  +  +L+    +   A    +    ++IV+D    ++   K    + P AS 
Sbjct: 47  VKMKKFILYLFILLYFMSSVKVYAESYPSISAKAAIVMDQETGRVLYEKNSHEKLPMAST 106

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           TK+MTL +  E     K +LN  + VSK AA+   S ++L        E  +  L+  S 
Sbjct: 107 TKIMTLLVALE-----KGNLNDIVTVSKRAASVGGSSIWLSPGEKIDMESLLYGLMLNSG 161

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILG 198
           ND +TA  E I GS + F  +M+ KAK+IG  NT +   SGL     +  TTA D A++ 
Sbjct: 162 NDAATAIAEHIGGSVESFVEIMNQKAKEIGAYNTHFVTPSGLDIGIDDHYTTAYDLALIT 221

Query: 199 ILLRKNFPQYYKYFSIRKFRYR------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
               + +P++ +  S ++          +R + N NKLL      DG+KTG+T  +G  +
Sbjct: 222 RYAFR-YPKFTEIVSTKEKTIPWEGKEWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCL 280

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK----KTLKHQQTHR-------K 301
           V+S   +    +AVV+  P   E    +++++     K    K L+  +  +       K
Sbjct: 281 VSSATREGRRFIAVVLNSPPMWE---DSMKILDYAFSKYKPYKVLEKGELIKKVKVEGGK 337

Query: 302 DNLSSTSLKKSLMIKKLKRTYSQF 325
           +N  S   +K+ +I  L+      
Sbjct: 338 ENTVSVVSEKACVIPALEEEKQNV 361


>gi|239827603|ref|YP_002950227.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70]
 gi|239807896|gb|ACS24961.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70]
          Length = 393

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 151/302 (50%), Gaps = 21/302 (6%)

Query: 30  LMGKILFLSIIMISMASELHAK-------------PKYSSIVIDVNKNQMTGFKQDEP-R 75
            +   LF SI ++ +++ +HA+                S+I+I+ +   +   K      
Sbjct: 5   FIRLFLFASIFILPISANIHAEENKTNTRGIQLANDAKSAILIERDTGTVLYEKNAHKKL 64

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
            PAS+TK+MT+ +I E +   +L    ++  S+ AA+   S+++L+     T ++ +  +
Sbjct: 65  PPASMTKIMTMLLIMEAIDKGELSYKEKVRASEYAASMGGSQIFLEPGEEMTVDELLRGI 124

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
              S ND S A  E I+GSE+ F  +M+ KAK++G++NT ++N++GL  +   ++A D A
Sbjct: 125 AIGSGNDASVAMAERIAGSEEAFVEMMNKKAKELGLKNTSFQNSTGLPAEGHYSSAYDMA 184

Query: 196 ILGILLRKNFPQYYKYFSI-----RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           ++   L K +    KY  I     R+   +   + N N+L+     +DG+KTG+T  + +
Sbjct: 185 MMARELLK-YEDITKYTGIYEDYLRENTDKKFWLVNTNRLVKFYPGVDGLKTGFTNEAKY 243

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLK 310
            +  + +     ++AVV G  T ++R+ +  +++     +    H    R + ++  ++ 
Sbjct: 244 CLTATAKKNGMRVIAVVFGASTPKDRNAQITKMLDYAFSQYKT-HPVYKRNEIIAHVNVS 302

Query: 311 KS 312
           K 
Sbjct: 303 KG 304


>gi|254511152|ref|ZP_05123219.1| D-alanyl-D-alanine carboxypeptidase family protein
           [Rhodobacteraceae bacterium KLH11]
 gi|221534863|gb|EEE37851.1| D-alanyl-D-alanine carboxypeptidase family protein
           [Rhodobacteraceae bacterium KLH11]
          Length = 448

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 99/263 (37%), Positives = 146/263 (55%), Gaps = 2/263 (0%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
           MG  L   + ++  A        Y+++VID    ++   +  D   +PASLTKMMTLYI 
Sbjct: 1   MGLFLIAFLWLLVFAPLKGLAAPYAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYIA 60

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           FE +++ ++ L+T + ++K A+++ PSKL L+          I A   +SAND +TA G 
Sbjct: 61  FEAVRNGEITLDTPVRITKKASSEPPSKLGLRTGQTIQFRYLIRAAAVKSANDAATAIGI 120

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            ISGSE  FA  M+  AK +GM  T +KNA GL +   ++TARD   LG  L  ++PQYY
Sbjct: 121 AISGSEAAFARRMTRTAKAMGMSRTTFKNAHGLTETGHLSTARDMTTLGRHLLYDYPQYY 180

Query: 210 KYFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             FS +      + + N N +LL      DGIKTGYTR +GFN+V S + KD+ I+A V 
Sbjct: 181 NLFSRQSTHAGIKTVPNTNRRLLAAYKGADGIKTGYTRAAGFNLVASAKRKDERIIATVF 240

Query: 269 GMPTSQERDQKALELITSFLEKK 291
           G  +   R+ +  EL+     + 
Sbjct: 241 GGKSGASRNARVAELLDMGFRRA 263


>gi|167572961|ref|ZP_02365835.1| family S11 unassigned peptidase [Burkholderia oklahomensis C6786]
          Length = 328

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 70/273 (25%), Positives = 136/273 (49%), Gaps = 13/273 (4%)

Query: 29  QLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
           +++G +L ++  + +  ++    P     S +V+D +  +          R PASLTK+M
Sbjct: 24  RILGAMLVVATSIAANGAQASPAPQIQAVSWLVVDADSGKTLAEHNVSARREPASLTKLM 83

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSAN 141
           T Y+  + L+   L  + ++ ++         + +++YL           +  LI  SAN
Sbjct: 84  TAYLALDALKQGTLRWDEKVEIAADDIASVGNDEARMYLAPGQRVQVRDLVRGLIVASAN 143

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D +    + I GS   FA  M++ A+++GM+++ + + SG+   +  +TA D +IL   L
Sbjct: 144 DAALVLAKRIGGSPAGFAKRMNDAAQRLGMRDSHFVSPSGITTPDHYSTAHDLSILARHL 203

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK-- 259
            ++FP++Y + S + F Y     TN N+LL     +DG+KTG+T  +G+ +V + +    
Sbjct: 204 NQDFPEFYTFSSQQHFEYGKFAKTNKNRLLRADPTVDGMKTGHTNAAGWCMVVTAKRGVA 263

Query: 260 ----DDPIVAVVMGMPTSQERDQKALELITSFL 288
                  ++AV++G PT ++R   A  L+    
Sbjct: 264 GSHAKHRVIAVLLGEPTEKQRLADARRLLDWGF 296


>gi|148981388|ref|ZP_01816384.1| D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium SWAT-3]
 gi|145960880|gb|EDK26210.1| D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium SWAT-3]
          Length = 278

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 87/255 (34%), Positives = 143/255 (56%), Gaps = 8/255 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           F + I++  A ++ AK     +++D +  ++   K+ +    PASLTKMMT Y+I + L+
Sbjct: 27  FAAPIVVPDAPQIAAK---GFVLMDYHSGKVLAEKEMNTQLSPASLTKMMTSYVIGQELE 83

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              ++LN  + +S+ A  +N    SK++++  T    E+    +I +S ND   A  E I
Sbjct: 84  RGNINLNDDVVISENAWAKNFPDSSKMFVEVGTTVKVEELNRGIIIQSGNDACVAMAEHI 143

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  F  LM+  A  IGM++T + N  GL + N  +T  D A+LG  L ++ P  Y+ 
Sbjct: 144 AGSEDAFVDLMNAWASSIGMKDTHFANVHGLDNPNLYSTPYDMALLGQALIRDVPDEYRI 203

Query: 212 FSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S +KF Y      N N LL  K  N+DGIKTG+T N+G+++V+S       +VAVVMG 
Sbjct: 204 YSQKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLVAVVMGT 263

Query: 271 PTSQERDQKALELIT 285
             +  R  ++ +L++
Sbjct: 264 KNANARKTESKKLLS 278


>gi|156934847|ref|YP_001438763.1| D-alanyl-D-alanine carboxypeptidase fraction A [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156533101|gb|ABU77927.1| hypothetical protein ESA_02695 [Cronobacter sakazakii ATCC BAA-894]
          Length = 428

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 85/344 (24%), Positives = 155/344 (45%), Gaps = 31/344 (9%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMA------------SELHAKPKYSSIVIDVN 62
           +     + +  R +Q +     LS+  +S A              +      + I+ID N
Sbjct: 21  VVQTMKTTFSVRFMQRLAVTTALSVAALSTAAHADDLNIKTMIPGVPQIDAEAYILIDYN 80

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNP 115
             ++   +  D  R PASLTKMMT Y+I + +++ K   +  + +   A        +  
Sbjct: 81  SGKVLAEQNADARRDPASLTKMMTSYVIGQAMKAGKFKESDLVTIGNDAWATGNPVFKGS 140

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S ++LK        Q I  +  +S ND   A  ++++GS+  F  LM++    +G++NT 
Sbjct: 141 SLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYVAGSQDAFVGLMNSYVTALGLKNTH 200

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           ++   GL    Q ++ARD A++G  L ++ P  Y  +  ++F +     TN N LL    
Sbjct: 201 FQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQTNRNGLLWDNS 260

Query: 236 -NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS---FLEK- 290
            N+DGIKTG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T    F E  
Sbjct: 261 LNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETV 320

Query: 291 KTLKHQQ-------THRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
             LK  +           ++ +S  + K + +   +      K 
Sbjct: 321 NPLKAGKEFASEPAWFGDNDRASLGVDKDIYLTIPRGRMKDLKA 364


>gi|54302470|ref|YP_132463.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
           profundum SS9]
 gi|46915892|emb|CAG22663.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
           profundum SS9]
          Length = 394

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 79/273 (28%), Positives = 139/273 (50%), Gaps = 8/273 (2%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPAS 79
           + +++ L       S+   + A  L + P     + +++     Q+     ++EP  PAS
Sbjct: 6   LLKHLSLFTLFTMASLPFSASADVLPSPPVIDAKAWLLMSYESGQVIASFNENEPLAPAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALI 136
           LTK+MT Y++ + + +  ++ +  + +S+ A  +     SK++L      T +Q    +I
Sbjct: 66  LTKIMTSYVVGKEINAGHINNDDLVIISENAWGKKFPGSSKMFLNIGDNVTVDQLNKGVI 125

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A  E ++G +  F  +M+ +A+ IGMQNT + N  GL    Q TTA D AI
Sbjct: 126 ISSGNDATVALAEHVAGHQAAFIEMMNRQAEVIGMQNTYFTNPHGLDADEQFTTAYDIAI 185

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTS 255
           L   L K+ P+ Y  F  + F + +    N N LL     N+DG+KTG+T  +G+++V+S
Sbjct: 186 LTRALIKDLPEMYGLFKEKSFTFHDIKQGNRNGLLWDTTLNVDGVKTGHTSKAGYSLVSS 245

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
                   +AVVMG  ++  R  ++ +L+T   
Sbjct: 246 AEQSGQRFIAVVMGTKSTGIRRSESKKLLTWGF 278


>gi|257413914|ref|ZP_04744661.2| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis
           L1-82]
 gi|257201876|gb|EEV00161.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis
           L1-82]
          Length = 402

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 84/290 (28%), Positives = 144/290 (49%), Gaps = 18/290 (6%)

Query: 40  IMISMASELHAKPKY-------SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFE 91
           I +S A++    P         S+I+++ +   +   K   E R+PAS+TK+MTL +IF+
Sbjct: 29  IPLSPAAQTDTAPAADLNISAPSAILMEASTGAVVYEKNSHEARHPASVTKIMTLLLIFD 88

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            L SK++ L+  + VS+ AA+   S+++L+     T E  I  +   SAND   A  E +
Sbjct: 89  ALSSKQISLDDTVTVSEYAASMGGSQVFLEPGETQTVETMIKCISVASANDACVAMAEHV 148

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE +F  +M+ +AK +GM +T + N  GL     +T+A D A++   L   +P+ + Y
Sbjct: 149 AGSESEFVRMMNERAKGLGMNDTNFVNCCGLDADGHMTSANDIALMSRELITKYPKIHDY 208

Query: 212 FSIRKFRYRNRI--------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
            +I      +          +TN NKL+       G+KTG+T  + + I  + +  D  +
Sbjct: 209 CTIWMENITHTTAKGSSEFGLTNTNKLIKHYQYATGLKTGFTNTAMYCISATAKKDDMEL 268

Query: 264 VAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSL 313
           +AV+MG P  + R   A  L+     K  +       +D L    ++K L
Sbjct: 269 IAVIMGAPDIKSRSADATTLLNYGFGKCRIYCDS--HEDKLDDLPVEKGL 316


>gi|33152983|ref|NP_874336.1| D-alanyl-D-alanine carboxypeptidase fraction A [Haemophilus ducreyi
           35000HP]
 gi|33149208|gb|AAP96725.1| penicillin-binding protein 5 [Haemophilus ducreyi 35000HP]
          Length = 393

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 85/299 (28%), Positives = 154/299 (51%), Gaps = 25/299 (8%)

Query: 31  MGKILFLSIIMISMASELHAKP---------------KYSSIVIDVNKNQMTGFKQDEPR 75
           M K LF SI ++++A    A                   + +++D N   +      + R
Sbjct: 1   MKKRLFTSISLVALAFSHSAVAVDASVEFGISAPQLNAQTYVLMDYNSGAVLASLNPQQR 60

Query: 76  -YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQG 131
            +PASLTKMMT Y++ + ++  K+  +  + VS+ A  +     S ++L   T  +    
Sbjct: 61  QHPASLTKMMTSYVVGDAIKQGKVKNSDMVTVSENAWARKFPGSSLMFLDLNTQVSVADL 120

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  LI  S ND + A  E  SGS++ F   M+   ++ G++NT +    GL +++Q ++A
Sbjct: 121 MRGLIIVSGNDAAVALAEHTSGSQQAFIDQMNKFGQQFGLKNTHFTTVHGLDEESQYSSA 180

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYR-NRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
            D AI+G  + ++ P+ YK +S ++F+Y   +   N N LL  K  N+DG+KTG+T  +G
Sbjct: 181 LDMAIIGAHVIRDQPEEYKIYSEKEFKYNIKKPQPNRNGLLWDKTMNVDGMKTGHTNQAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK----KTLKHQQTHRKDNL 304
           +N+V S    +  +++VVMG+PT + R+ ++ +L+          K+L   QT  +  +
Sbjct: 241 YNLVASATNSNTRLISVVMGVPTYKGREVESKKLLQWGFANFETVKSLPAGQTVSEQGV 299


>gi|240137704|ref|YP_002962175.1| serine-type D-alanyl-D-alanine carboxypeptidase precursor
           [Methylobacterium extorquens AM1]
 gi|240007672|gb|ACS38898.1| serine-type D-alanyl-D-alanine carboxypeptidase precursor
           [Methylobacterium extorquens AM1]
          Length = 501

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 96/295 (32%), Positives = 160/295 (54%), Gaps = 9/295 (3%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLY 87
           +L+G +  L + M   AS + A      +V+D    ++   +   +P YPAS+TK+MT Y
Sbjct: 8   RLIGSLTALGL-MAGAASAVTAP----ILVVDAESGKVLYSQGATDPWYPASITKLMTTY 62

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           +  + ++  K+ L+T + VS  AA + PSK+  K  T  T +  +  ++ +SANDVS A 
Sbjct: 63  VALDMVRQGKVSLDTLLTVSPAAAAEPPSKMGFKPGTQITLDNALKIIMVKSANDVSWAI 122

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
           GE + GS + FA +M+  A +IGM+ + + N +GL +  Q T+ARD A+L   L ++FP 
Sbjct: 123 GEGLGGSVEGFADMMNETAHRIGMRESRWYNPNGLPEPRQWTSARDMAVLARALMRDFPN 182

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
               FSI   ++   ++ NHN LL +    DG+KTG+  + GFN+V +       I+ VV
Sbjct: 183 QQNLFSISAIQFGKSVMANHNGLLGRYPGADGMKTGFICSGGFNVVATATRGGRRIITVV 242

Query: 268 MGMPTSQERDQKALELITSFLEKK---TLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
           MG P+++ERD KA +L      +    T    ++    N+++    +  +  K K
Sbjct: 243 MGQPSARERDIKAADLFDYGFGQSAGWTAPTLESLPPSNVAAPPDLRPYICDKRK 297


>gi|330818433|ref|YP_004362138.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           gladioli BSR3]
 gi|327370826|gb|AEA62182.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           gladioli BSR3]
          Length = 434

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 74/246 (30%), Positives = 133/246 (54%), Gaps = 10/246 (4%)

Query: 53  KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             S +++D + NQ+      DE   PASLTK+MT Y++FE L +KK+ +   +  S+   
Sbjct: 78  ARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALSTKKISMEQIVTPSEAVR 137

Query: 111 -ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
               + S+++++     +    +  +I +S ND + A  E + GSE +F  +M+ +A+K+
Sbjct: 138 RVGTDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSESQFVNMMNAEAQKL 197

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM  T + + +G+ D    TTA D A L   L ++FP YY  FS+++F Y N    N N+
Sbjct: 198 GMSGTHFADVNGMPDPQHYTTAGDLAKLSARLIRDFPDYYNIFSVKEFSYNNIRQPNRNR 257

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMPTSQERDQKALE 282
           LL     +DG+KTG+T+ +G+ ++ S +            +V+V+MG     +R Q +++
Sbjct: 258 LLWIDPTVDGLKTGHTQAAGYCLIASAKRALPGADGGTRRLVSVMMGETKESDRVQDSMK 317

Query: 283 LITSFL 288
           ++    
Sbjct: 318 MLNYGY 323


>gi|308187437|ref|YP_003931568.1| DD-carboxypeptidase, penicillin-binding protein 6B [Pantoea vagans
           C9-1]
 gi|308057947|gb|ADO10119.1| DD-carboxypeptidase, penicillin-binding protein 6B [Pantoea vagans
           C9-1]
          Length = 388

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 75/281 (26%), Positives = 133/281 (47%), Gaps = 12/281 (4%)

Query: 22  IYIQRNIQLMGKILFLSIIM----ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           +  +R +  +   +F + +     I       A    S +++D    Q+      DE R 
Sbjct: 1   MLKRRLLFTVTATVFWASLAQADAIPFPVTPPAIDAASWVLMDATTGQVLTAGNPDERRN 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQ 130
           PASLTK+MT Y++   +  KK+  +  + V K A        +  S ++LK     +   
Sbjct: 61  PASLTKLMTGYVVDRAIDQKKISRDDMVTVGKDAWAAGNPVFKGSSLMFLKPGDKLSVRD 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               +I  S ND   A  ++++GSE  F  +M++  +K+G+QNT ++   GL    Q ++
Sbjct: 121 LSRGVIIDSGNDACVALADYVAGSEANFVGMMNHYVEKLGLQNTHFETVHGLDAPGQYSS 180

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSG 249
           A D A L   +    P +Y  +S +   +      N N LL   + ++DG+KTG+T  +G
Sbjct: 181 ALDMAKLSRAIIDGEPDFYAMYSEKTLSWNGITQNNRNGLLWDNNLHVDGLKTGHTETAG 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           FNI+ S       ++AVVMG  + + R+++A +L+      
Sbjct: 241 FNIIASNVVGKHRLIAVVMGGKSPKGREEQARKLLVWGQNT 281


>gi|330006051|ref|ZP_08305469.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3]
 gi|328535989|gb|EGF62402.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3]
          Length = 423

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 78/256 (30%), Positives = 131/256 (51%), Gaps = 11/256 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI  A ++ A+   S I+ID N  ++      D  R PASLTKMMT Y+I + +++ K  
Sbjct: 57  MIPGAPQIDAE---SWILIDYNSGKVLAENNADSRRDPASLTKMMTSYVIGQAMKAGKFK 113

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            +  + V   A        +  S ++LK        Q I  +  +S ND   A  ++++G
Sbjct: 114 ESDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYVAG 173

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+N    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 174 SQDAFVSLMNNYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYR 233

Query: 214 IRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL     N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 234 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 293

Query: 273 SQERDQKALELITSFL 288
            + R+ ++ +L+T   
Sbjct: 294 FKGRESESKKLLTWGF 309


>gi|332971504|gb|EGK10454.1| serine-type D-Ala-D-Ala carboxypeptidase [Kingella kingae ATCC
           23330]
          Length = 432

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 78/237 (32%), Positives = 137/237 (57%), Gaps = 1/237 (0%)

Query: 53  KYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + +V D+   Q+      D+   PASLTK+MT Y++F+ L++KK+  +     S+ A 
Sbjct: 82  AVAYLVQDLQSGQILAQANADQKIEPASLTKVMTAYLVFQALENKKITPDQTTKTSEHAW 141

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            Q  S+++L+     + +  +  L+ + AND + +  E ++GSE +F  LM+ +AK++GM
Sbjct: 142 RQAGSRMFLELGKPVSVQDLVHGLVVQLANDAAVSLAELLAGSEAEFVALMNAEAKRLGM 201

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
            NT + NA+GL  +  +TT +D AIL   L ++FPQYYK +S + F Y      N N LL
Sbjct: 202 TNTHFDNATGLSSQTHLTTVKDLAILSNALIRDFPQYYKIYSTKSFTYNTITQQNRNLLL 261

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            +  NIDG+  GYT + G+N++ S +     ++++V G  +++ R  ++ +L+   L
Sbjct: 262 FRDDNIDGLAAGYTNSGGYNLIASSKRDGRRVLSIVAGAASAESRATESSKLLNYAL 318


>gi|254560273|ref|YP_003067368.1| serine-type D-alanyl-D-alanine carboxypeptidase [Methylobacterium
           extorquens DM4]
 gi|254267551|emb|CAX23393.1| serine-type D-alanyl-D-alanine carboxypeptidase precursor
           [Methylobacterium extorquens DM4]
          Length = 501

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 96/295 (32%), Positives = 160/295 (54%), Gaps = 9/295 (3%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLY 87
           +L+G +  L + M   AS + A      +V+D    ++   +   +P YPAS+TK+MT Y
Sbjct: 8   RLIGSLTALGL-MAGAASAVTAP----ILVVDAESGKVLYSQGATDPWYPASITKLMTTY 62

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           +  + ++  K+ L+T + VS  AA + PSK+  K  T  T +  +  ++ +SANDVS A 
Sbjct: 63  VALDMVRQGKVSLDTLLTVSPAAAAEPPSKMGFKPGTQITLDNALKIIMVKSANDVSWAI 122

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
           GE + GS + FA +M+  A +IGM+ + + N +GL +  Q T+ARD A+L   L ++FP 
Sbjct: 123 GEGLGGSVEGFADMMNETAHRIGMRESRWYNPNGLPEPRQWTSARDMAVLARALMRDFPN 182

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
               FSI   ++   ++ NHN LL +    DG+KTG+  + GFN+V +       I+ VV
Sbjct: 183 QQNLFSISAIQFGKSVMANHNGLLGRYPGADGMKTGFICSGGFNVVATATRGGRRIITVV 242

Query: 268 MGMPTSQERDQKALELITSFLEKK---TLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
           MG P+++ERD KA +L      +    T    ++    N+++    +  +  K K
Sbjct: 243 MGQPSARERDIKAADLFDYGFGQSAGWTAPTLESLPPSNVAAPPDMRPYICDKRK 297


>gi|237734435|ref|ZP_04564916.1| D-alanyl-D-alanine carboxypeptidase [Mollicutes bacterium D7]
 gi|229382665|gb|EEO32756.1| D-alanyl-D-alanine carboxypeptidase [Coprobacillus sp. D7]
          Length = 390

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 103/332 (31%), Positives = 175/332 (52%), Gaps = 18/332 (5%)

Query: 21  SIYIQRNIQLMGKILF-LSIIMISMASELHA------KPKYSSIVIDVNKNQMTGFKQDE 73
            I I+  I+LM K+L  L ++ +   S + A          S+I+I+ N  Q+   K  E
Sbjct: 2   DILIREAIKLMKKLLITLLVVCLLPISRVQALDNDVTPNAKSAILIEANSRQILYDKNAE 61

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
              YPAS TK+MT+ ++FE L++KK+  + +I  SK AA+   S++YL+     + +   
Sbjct: 62  EKLYPASTTKIMTMILMFEALRNKKISFDDEITTSKYAASMGGSQVYLEVGESLSLKDMF 121

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
            ++   SAND S A  E I+GS  KF  +M++KAKK+G++NT +KNA+GLHD +  T A 
Sbjct: 122 KSIAIASANDASVAVAEHIAGSINKFVEMMNDKAKKLGLKNTHFKNATGLHDPDHYTCAH 181

Query: 193 DQAILGILLRKNFPQYYKYFS------IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           D AI+   L +   +     +      IR+   ++  + N NKLL   + +DG+KTGYT+
Sbjct: 182 DLAIMAAYLIEIGGEDLFAVTSLYDSYIREDTKQSFWLVNTNKLLKLYNGVDGLKTGYTK 241

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK---TLKHQQTHRKDN 303
            +G+ +VT+ +     I+ V+M     + R+++   L+          T+  + T  + +
Sbjct: 242 EAGYCLVTTAQRDGQRIIGVLMKETAPKTRNEEMCSLLDYGFNNYKQVTIFKKDTLIEQH 301

Query: 304 LSSTSLKKSLMIK-KLKRTYSQFKKIDAKAHS 334
           L       ++ +K K    Y++ K  DAK  +
Sbjct: 302 LVDKMDNLTIDVKCKKDIVYTKAKSADAKVST 333


>gi|166030455|ref|ZP_02233284.1| hypothetical protein DORFOR_00116 [Dorea formicigenerans ATCC
           27755]
 gi|166029813|gb|EDR48570.1| hypothetical protein DORFOR_00116 [Dorea formicigenerans ATCC
           27755]
          Length = 426

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 84/291 (28%), Positives = 144/291 (49%), Gaps = 11/291 (3%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+++++ +  Q+   K  D  R PAS+TK+MTL +IF+ LQ  K+HL  ++  S+ AA
Sbjct: 73  APSALLMEASTGQVIYEKDADSKRPPASVTKVMTLLLIFDALQEGKIHLEDEVTTSEYAA 132

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S+++L+     T E  I  +   SAND      E+I G+E++F   M+ +AK +GM
Sbjct: 133 SMGGSQVFLEPGEVQTVETLIKCISVASANDACVCMAEYICGNEQEFVNQMNERAKGLGM 192

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-------- 223
           +NT + N +GL  +  +TTARD A++   L   +PQ + Y +I      +          
Sbjct: 193 ENTHFVNCNGLDAEGHVTTARDIALMSRELIHTYPQIFDYCNIWMEDITHTTKKGSTQFG 252

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           +TN NK++ +     G+KTG T  + F I  + R  +  ++AV+M    S+ R + A+ L
Sbjct: 253 LTNTNKMIRQYEYATGLKTGSTSQAKFCISATARKDNTDMIAVIMAADDSKARMRDAITL 312

Query: 284 ITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
           +     K     + T +K  +    +K  +  K        F  +D     
Sbjct: 313 LNYGFGKCQKYQEDTVKK--IQDVPVKHGVEKKVGAAQMELFSYVDVTGAD 361


>gi|317048758|ref|YP_004116406.1| beta-lactamase [Pantoea sp. At-9b]
 gi|316950375|gb|ADU69850.1| Beta-lactamase [Pantoea sp. At-9b]
          Length = 389

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 75/274 (27%), Positives = 133/274 (48%), Gaps = 12/274 (4%)

Query: 28  IQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMT-GFKQDEPRYPASLTK 82
           + + G I++ S+            P      S +++D    Q+      DE R PASLTK
Sbjct: 8   VTVSGMIVWASLAQADDGMPFPLTPPSIDAASWVLMDATTGQILTAGNPDEERNPASLTK 67

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALI 136
           +MT Y++   +   K+  +  + V K A        +  S ++LK     T       +I
Sbjct: 68  LMTGYVVDRAIDQHKISRDDVVTVGKDAWAAGNPVFKGSSLMFLKPGDKVTVRDLSRGVI 127

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND   A  ++++GS++ F  +M++  +K+G+ +T ++   GL    Q TTARD A+
Sbjct: 128 IDSGNDACVALADYVAGSQQNFVTMMNSYVQKLGLTHTHFETVHGLDAPGQHTTARDLAV 187

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTS 255
           L   +    P +Y  +S +   +      N N LL   + ++DG+KTG+T  +GFNI+ S
Sbjct: 188 LSRAIISGEPDFYAMYSEKTLTWNGITQNNRNGLLWDNNLHVDGLKTGHTETAGFNIIAS 247

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
                  ++AV+MG  +S+ R+++A +L+     
Sbjct: 248 SIVGQHRLIAVIMGGKSSKGREEQARKLLVWGQN 281


>gi|332529901|ref|ZP_08405852.1| serine-type D-Ala-D-Ala carboxypeptidase [Hylemonella gracilis ATCC
           19624]
 gi|332040598|gb|EGI76973.1| serine-type D-Ala-D-Ala carboxypeptidase [Hylemonella gracilis ATCC
           19624]
          Length = 378

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 77/261 (29%), Positives = 135/261 (51%), Gaps = 15/261 (5%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           S+A +       + +++D++  Q +     D+   PASLTK+MT Y++FE L+  +L L 
Sbjct: 9   SLAPKPPELAARAWLLLDLSSGQALAASNADQTLPPASLTKLMTAYLVFEALRDGRLSLE 68

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
             + +S+ A  Q  S+++L+       E  I  L+ +S ND + A  E ++GS + F   
Sbjct: 69  KPLTISERARRQPGSRMFLEAGMRVPVEDLIKGLLVQSGNDGAVALAEGVAGSMENFVQA 128

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           M+ KA+ +G+  T + N +GL    Q +TARD  +L   L  +FP++  Y+ IRK+RY  
Sbjct: 129 MNEKARALGLGATHFANPTGLPVDGQQSTARDLGVLAQRLLSDFPEHAHYYGIRKYRYAG 188

Query: 222 RII---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-----------KDDPIVAVV 267
                 +N N LL +  ++DG+KTG+    G+++V + +                ++AVV
Sbjct: 189 TPPANDSNRNLLLFRDPSVDGMKTGHVEAVGYSMVATAQREFPHLGAAGGPGPRRLLAVV 248

Query: 268 MGMPTSQERDQKALELITSFL 288
           +G  + Q R  +A  L+    
Sbjct: 249 LGADSEQTRAAEAQRLLNWGY 269


>gi|332094304|gb|EGI99355.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella boydii 5216-82]
          Length = 403

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 87/337 (25%), Positives = 152/337 (45%), Gaps = 30/337 (8%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNKNQMTGF 69
           +I+  R ++ +     L    IS A            ++      S I+ID N  ++   
Sbjct: 3   TIFSARIMKRLALTTALCTAFISAAHADDLNIKTMIPDVPQIDAESYILIDYNSGKVLAE 62

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKE 122
           +  D  R PASLTKMMT Y+I + +++ K      + +   A        +  S ++LK 
Sbjct: 63  QNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKP 122

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
                  Q I  +  +S ND   A  +F +GS+  F  LM++    +G++NT ++   GL
Sbjct: 123 GMQVPVYQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGL 182

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIK 241
               Q ++ARD A++G  L ++ P  Y  +  ++F +      N N LL     N+DGIK
Sbjct: 183 DADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIK 242

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS---FLEKKT-LKHQQ 297
           TG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T    F E  T LK  +
Sbjct: 243 TGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVTPLKVGK 302

Query: 298 THRKD-------NLSSTSLKKSLMIKKLKRTYSQFKK 327
               +       + +S  + K + +   +      K 
Sbjct: 303 EFASEPVWFGDSDRASLGVDKDVYLTIPRGRMKDLKA 339


>gi|58039077|ref|YP_191041.1| D-alanyl-D-alanine carboxypeptidase [Gluconobacter oxydans 621H]
 gi|58001491|gb|AAW60385.1| D-alanyl-D-alanine carboxypeptidase [Gluconobacter oxydans 621H]
          Length = 348

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 106/258 (41%), Positives = 157/258 (60%), Gaps = 5/258 (1%)

Query: 36  FLSIIMISM---ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFE 91
           FL   M +M   +++       SS V+D     +      E  RYPASLTK+MTLY+ F 
Sbjct: 9   FLLCAMTAMGLGSAKAQYAGHISSYVMDARTGAVLSATDAELQRYPASLTKLMTLYLTFR 68

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            L++ ++ L+ Q+PVS  A+ Q PSKL L   T  T EQGIL L+T+SAND + A GEF+
Sbjct: 69  ALEAHQITLDEQVPVSIHASVQAPSKLGLVPGTRLTVEQGILGLVTKSANDAACALGEFL 128

Query: 152 SGSEK-KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
            G ++ +FA LM+ +A+ +GM NT ++NASGL D +Q+TTA D A+L   L  +FPQYY 
Sbjct: 129 GGGDEVRFAQLMTQQARALGMTNTTFRNASGLPDPDQVTTAHDLALLSQHLISDFPQYYH 188

Query: 211 YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           YF++  F +  R++ NH+ +L      DG+KTGYT  +G N++TS +  +  ++ VVMG 
Sbjct: 189 YFNVPSFYFHRRMVPNHDPMLKIYAGADGLKTGYTDLAGHNLITSAQRGNVRLIGVVMGA 248

Query: 271 PTSQERDQKALELITSFL 288
           P +  R  + + L+    
Sbjct: 249 PNNTRRSMEMVSLLDKGF 266


>gi|299135167|ref|ZP_07028358.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2]
 gi|298590144|gb|EFI50348.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2]
          Length = 597

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 122/324 (37%), Positives = 171/324 (52%), Gaps = 16/324 (4%)

Query: 14  FLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHA--------------KPKYSSIVI 59
            L   + S    R + L    + +++++   A                    P ++SIV+
Sbjct: 1   MLGVSFASGRTARYLTLALAAVSITLLLTDHADARRRHHRHHRAHVERSGYNPPFASIVV 60

Query: 60  DVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           D N          D  R+PASLTK+MTLY++FE L S KL L++Q+ VS+ A+ Q P+KL
Sbjct: 61  DANSGATLQSTNADALRHPASLTKIMTLYMLFEQLDSGKLRLDSQLEVSRHASVQAPTKL 120

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            L+       E  I  ++TRSAND +    E I GSE+ F  +M+ KA+ +GM  T Y N
Sbjct: 121 GLRPGQTIRVEDAIKGIVTRSANDAAVVVAEAIGGSEENFCKMMTRKARALGMSKTTYVN 180

Query: 179 ASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNID 238
           ASGL D +QITTARDQA LG  ++  FP YY+YFS   F +R   I NHN LL +M  +D
Sbjct: 181 ASGLPDDDQITTARDQATLGRAIQDRFPTYYRYFSTSVFTWRGSPIRNHNHLLGQMDGVD 240

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQ 297
           GIKTGY R SGFN+VT++R  +  +V VV+G  +   RD     L+   L E  T +   
Sbjct: 241 GIKTGYVRASGFNLVTNIRRGNRHLVGVVLGGRSGGSRDATMRRLLAEHLDEGATRRTVA 300

Query: 298 THRKDNLSSTSLKKSLMIKKLKRT 321
              + N S  +  +    K   R 
Sbjct: 301 AITERNPSRMASDEEPAAKAASRP 324


>gi|167037551|ref|YP_001665129.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115966|ref|YP_004186125.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166856385|gb|ABY94793.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929057|gb|ADV79742.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 382

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 82/322 (25%), Positives = 146/322 (45%), Gaps = 29/322 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           +++ +  +  +L+    +   A    +    ++IV+D    ++   K    + P AS TK
Sbjct: 4   MKKFVLYLFILLYFMSSVKVYAESYPSISAKAAIVMDQETGRVLYEKNPHEKLPMASTTK 63

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MTL +  E     K +LN  + VSK AA+   S ++L        E  +  L+  S ND
Sbjct: 64  IMTLLVALE-----KGNLNDIVTVSKRAASVGGSSIWLSPGEKIDMESLLYGLMLNSGND 118

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILGIL 200
            +TA  E I GS + F  +M+ KA++IG  NT +   SGL     +  TTA D A++   
Sbjct: 119 AATAIAEHIGGSVENFIEIMNQKAREIGAYNTHFVTPSGLDIGIDDHYTTAYDLALITRY 178

Query: 201 LRKNFPQYYKYFSIRKFRYR------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
             + +P++ +  S ++          +R + N NKLL      DG+KTG+T  +G  +V+
Sbjct: 179 AFR-YPKFAEIVSTKEKTIPWEGREWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVS 237

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK----KTLKHQQTHR-------KDN 303
           S   +    +AVV+  P   E    +++++     K    K L+  +  +       K+N
Sbjct: 238 SASREGRRFIAVVLNSPPMWE---DSMKILDYAFSKYKPYKVLEKGELIKKIKVEGGKEN 294

Query: 304 LSSTSLKKSLMIKKLKRTYSQF 325
             S   ++  +I  L+      
Sbjct: 295 SVSVVSERECIIPALEDEKQDV 316


>gi|170744628|ref|YP_001773283.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp.
           4-46]
 gi|168198902|gb|ACA20849.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp.
           4-46]
          Length = 506

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 85/237 (35%), Positives = 141/237 (59%), Gaps = 1/237 (0%)

Query: 57  IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V+DV+  ++   +   +P YPAS+TK+MT Y+  + ++  +  ++  + +S  AA + P
Sbjct: 34  LVVDVDSGKVLYSQAATDPWYPASITKLMTTYVALDLVRQGRASMDQLLTISAEAAAEPP 93

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           SK+  +  T  T +  +  ++ +SANDV+ A GE + GS   FA LM+  A+++GM+++ 
Sbjct: 94  SKMGFRPGTQLTLDNALKIIMVKSANDVAWAIGENLGGSIDNFAALMNETAQRLGMRDSH 153

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           + N +GL D  Q T+ARD AILG  L ++FP+    FSI   ++   ++ NHN LL +  
Sbjct: 154 WYNPNGLPDPRQWTSARDMAILGRALLRDFPENRDLFSISAIQFGRAVMANHNGLLGRYA 213

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
            +DG+KTG+    GFN+V S       I+ VVMG PT++ERD KA +L      + +
Sbjct: 214 GVDGMKTGFICAGGFNVVASATRNGRRIITVVMGQPTARERDLKAADLFDYGFGQSS 270


>gi|300824757|ref|ZP_07104862.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           119-7]
 gi|300920250|ref|ZP_07136696.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           115-1]
 gi|301018907|ref|ZP_07183137.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           196-1]
 gi|299882461|gb|EFI90672.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           196-1]
 gi|300412752|gb|EFJ96062.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           115-1]
 gi|300522744|gb|EFK43813.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           119-7]
 gi|323172598|gb|EFZ58232.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli LT-68]
          Length = 347

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 126/242 (52%), Gaps = 8/242 (3%)

Query: 59  IDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---- 113
           +D    Q+     + + R PASLTK+MT Y++   + S ++  +  + V + A  +    
Sbjct: 1   MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60

Query: 114 --NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S ++LKE    +       LI  S ND   A  ++I+G +++F  +M+N A+K+ +
Sbjct: 61  FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL
Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180

Query: 232 N-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
             K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R+++A +L+    + 
Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240

Query: 291 KT 292
            T
Sbjct: 241 FT 242


>gi|270261117|ref|ZP_06189390.1| hypothetical protein SOD_a03420 [Serratia odorifera 4Rx13]
 gi|270044601|gb|EFA17692.1| hypothetical protein SOD_a03420 [Serratia odorifera 4Rx13]
          Length = 401

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 84/332 (25%), Positives = 153/332 (46%), Gaps = 28/332 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGF-KQDE 73
           +++N+    K L  S+ ++ +A+                 + +++D N  ++      D 
Sbjct: 2   MKKNLSTSLKKLTFSVSILLLATPAIQAAEAPAAPQVDAKAFVLMDYNSGKILTEGNADT 61

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFT 127
              PASLTK+M+ Y+I + +++ K+     + V K A        +  S +++K      
Sbjct: 62  RLDPASLTKIMSSYVIGQAIKAGKIKPEDMVTVGKDAWATGNPALRGSSLMFIKPGDQVP 121

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
             +    ++ +S ND S A  ++++GS+  F  LM+N AK +G+QNT +    GL  + Q
Sbjct: 122 VMELNKGIVIQSGNDASIALADYVAGSQDSFVGLMNNYAKSLGLQNTHFLTVHGLDAEGQ 181

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTR 246
            +TARD A+L   L ++ P  Y     ++F +      N N+LL   + N+DGIKTGYT 
Sbjct: 182 YSTARDMALLSQALIRDVPVEYALHKEKEFTFNKIRQVNRNRLLWSSNLNVDGIKTGYTG 241

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS---FLEKKT--------LKH 295
            +G N+V S       +++VV+G P+ + R  ++ +L+T    F E  T        +  
Sbjct: 242 GAGHNLVASATDGPMRLISVVLGAPSDRIRFSESEKLLTWGFRFYETATPIKTDKPFVTQ 301

Query: 296 QQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
           +    + N     + K   +   K      K 
Sbjct: 302 RVWFGEINDVPLGVAKDAAVTIPKGQMKNLKA 333


>gi|206577494|ref|YP_002239713.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae
           342]
 gi|288936555|ref|YP_003440614.1| beta-lactamase [Klebsiella variicola At-22]
 gi|290510389|ref|ZP_06549759.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55]
 gi|206566552|gb|ACI08328.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae
           342]
 gi|288891264|gb|ADC59582.1| Beta-lactamase [Klebsiella variicola At-22]
 gi|289777105|gb|EFD85103.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55]
          Length = 399

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 77/256 (30%), Positives = 131/256 (51%), Gaps = 11/256 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI  A ++ A+   S ++ID N  ++      D  R PASLTKMMT Y+I + +++ K  
Sbjct: 33  MIPGAPQIDAE---SWVLIDYNSGKVLAENNADSRRDPASLTKMMTSYVIGQAMKAGKFK 89

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            +  + V   A        +  S ++LK        Q I  +  +S ND   A  ++++G
Sbjct: 90  ESDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYVAG 149

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+N    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 150 SQDAFVSLMNNYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYR 209

Query: 214 IRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL     N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 210 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 269

Query: 273 SQERDQKALELITSFL 288
            + R+ ++ +L+T   
Sbjct: 270 FKGRESESKKLLTWGF 285


>gi|213583748|ref|ZP_03365574.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 401

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 82/285 (28%), Positives = 134/285 (47%), Gaps = 19/285 (6%)

Query: 23  YIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNKNQMTGFKQ 71
           +  R +Q M     L    IS A             +      S I+ID N  ++   + 
Sbjct: 3   FSARFMQRMALTTALCATFISTAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQN 62

Query: 72  -DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKT 124
            DE R PASLTKMMT Y+I + +++ K      + V   A        +  S ++LK   
Sbjct: 63  ADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDAWATGNPVFKGSSLMFLKPGM 122

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
                Q I  +  +S ND   A  +F +GS+  F  LM++    +G++NT ++   GL  
Sbjct: 123 QVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDA 182

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTG 243
             Q ++ARD A++G  L ++ P  Y  +  ++F +      N N LL     N+DGIKTG
Sbjct: 183 DGQYSSARDMALIGQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTG 242

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +T  +G+N+V S       +++ VMG  T + R+ ++ +L+T   
Sbjct: 243 HTSKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLTWGF 287


>gi|213425100|ref|ZP_03357850.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|289823664|ref|ZP_06543276.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
          Length = 427

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 136/293 (46%), Gaps = 19/293 (6%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNK 63
           +     + +  R +Q M     L    IS A             +      S I+ID N 
Sbjct: 21  VVQTMKTTFSARFMQRMALTTALCATFISTAHADDLNIKTMIPGVPQIDAESYILIDYNS 80

Query: 64  NQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPS 116
            ++   +  DE R PASLTKMMT Y+I + +++ K      + V   A        +  S
Sbjct: 81  GKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDAWATGNPVFKGSS 140

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
            ++LK        Q I  +  +S ND   A  +F +GS+  F  LM++    +G++NT +
Sbjct: 141 LMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHF 200

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH- 235
           +   GL    Q ++ARD A++G  L ++ P  Y  +  ++F +      N N LL     
Sbjct: 201 QTVHGLDADGQYSSARDMALIGQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWDNSL 260

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           N+DGIKTG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T   
Sbjct: 261 NVDGIKTGHTSKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLTWGF 313


>gi|156977862|ref|YP_001448768.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi ATCC BAA-1116]
 gi|156529456|gb|ABU74541.1| hypothetical protein VIBHAR_06653 [Vibrio harveyi ATCC BAA-1116]
          Length = 388

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 144/290 (49%), Gaps = 9/290 (3%)

Query: 31  MGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTL 86
           +  +L  +I   ++A      P       +++D     +   +       PASLTK+MT 
Sbjct: 10  LACLLLQTISAPALAVVTPNPPQLQAKGYVLMDFQSGAIIAEQNARAGLAPASLTKLMTA 69

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSANDV 143
           Y++ + ++S +L  + ++ VS+ A +    + SK++++ K   T    +  +I +S ND 
Sbjct: 70  YVVGQEIKSGRLQWDDKVTVSENAWSAKFPDSSKMFIQPKDEITVANLMRGVIIQSGNDA 129

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
             A  E ++G E  F  LM+  A K+ + +T + N+ GL  +   T+  D A L   +  
Sbjct: 130 CVALAEHVAGGEGAFVALMNGWADKLSLNDTYFVNSHGLDSEGIQTSPNDMATLMQSIIN 189

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           + P+ Y  +S + F++      N NKLL  K  ++DG KTGYT N+G+++V+S +     
Sbjct: 190 DVPEVYALYSEKVFKWNKITQYNRNKLLWDKSMDVDGGKTGYTSNAGYSLVSSAKQGKMR 249

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           +++VVMG P+ Q R  ++  L++        K Q   + +  +S  + K 
Sbjct: 250 LISVVMGTPSKQSRITQSKNLLSYGFRFYDTK-QVAKQGEVQASAKVWKG 298


>gi|74095596|emb|CAJ27362.1| strongly similar to penicillin-binding protein 5 precursor
           [Cronobacter sakazakii]
          Length = 404

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 85/340 (25%), Positives = 154/340 (45%), Gaps = 31/340 (9%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMA------------SELHAKPKYSSIVIDVNKNQM 66
             + +  R +Q +     LS+  +S A              +      + I+ID N  ++
Sbjct: 1   MKTTFSVRFMQRLAVTTALSVAALSTAAHADDLNIKTMIPGVPQIDAEAYILIDYNSGKV 60

Query: 67  TGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLY 119
              +  D  R PASLTKMMT Y+I + +++ K   +  + +   A        +  S ++
Sbjct: 61  LAEQNADARRDPASLTKMMTSYVIGQAMKAGKFKESDLVTIGNDAWATGNPVFKGSSLMF 120

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           LK        Q I  +  +S ND   A  ++++GS+  F  LM++    +G++NT ++  
Sbjct: 121 LKPGMQVPVSQLIRGINLQSGNDACVAMADYVAGSQDAFVGLMNSYVTALGLKNTHFQTV 180

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NID 238
            GL    Q ++ARD A++G  L ++ P  Y  +  ++F +     TN N LL     N+D
Sbjct: 181 HGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQTNRNGLLWDNSLNVD 240

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS---FLEK-KTLK 294
           GIKTG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T    F E    LK
Sbjct: 241 GIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPLK 300

Query: 295 HQQ-------THRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
             +           ++ +S  + K + +   +      K 
Sbjct: 301 AGKEFASEPAWFGDNDRASLGVDKDIYLTIPRGRMKDLKA 340


>gi|281600032|gb|ADA73016.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Shigella flexneri
           2002017]
          Length = 427

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 136/293 (46%), Gaps = 19/293 (6%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNK 63
           +     +I+  R ++ +     L    IS A             +      S I+ID N 
Sbjct: 21  VVQTMNTIFSARIMKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNS 80

Query: 64  NQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPS 116
            ++   +  D  R PASLTKMMT Y+I + +++ K      + +   A        +  S
Sbjct: 81  GKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSS 140

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
            ++LK        Q I  +  +S ND   A  +F +GS+  F  LM++    +G++NT +
Sbjct: 141 LMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHF 200

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH- 235
           +   GL    Q ++ARD A++G  L ++ P  Y  +  ++F +      N N LL     
Sbjct: 201 QTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSL 260

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           N+DGIKTG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T   
Sbjct: 261 NVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGF 313


>gi|269960275|ref|ZP_06174649.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834886|gb|EEZ88971.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 388

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 145/290 (50%), Gaps = 9/290 (3%)

Query: 31  MGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTL 86
           +  +L  +I   ++A      P       +++D     +   +       PASLTK+MT 
Sbjct: 10  LTCLLLQTISAPALAVVTPNPPQLQAKGYVLMDFQSGAIIAEQNARAGLAPASLTKLMTA 69

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSANDV 143
           Y++ + ++S +L  + ++ VS+ A +    + SK++++ K   T    +  +I +S ND 
Sbjct: 70  YVVGQEIKSGRLQWDDKVTVSENAWSAKFPDSSKMFIQPKDEITVANLMRGVIIQSGNDA 129

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
             A  E ++GSE  F  LM+  A K+ + +T + N+ GL  +   T+  D A L   +  
Sbjct: 130 CVALAEHVAGSEGAFVALMNGWADKLSLNDTYFVNSHGLDSEGIQTSPNDMATLMQSIIN 189

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           + P+ Y  +S + F++      N NKLL  K  ++DG KTGYT N+G+++V+S +     
Sbjct: 190 DVPEVYALYSEKVFKWNKITQYNRNKLLWDKSMDVDGGKTGYTSNAGYSLVSSAKQGKMR 249

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           +++VVMG P+ Q R  ++  L++        K Q   + +  +S  + K 
Sbjct: 250 LISVVMGTPSKQSRISQSKNLLSYGFRFYDTK-QVAKQGEVQASAKVWKG 298


>gi|16764014|ref|NP_459629.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|62179236|ref|YP_215653.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161615147|ref|YP_001589112.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167550827|ref|ZP_02344583.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|167990643|ref|ZP_02571743.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168231649|ref|ZP_02656707.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168236628|ref|ZP_02661686.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168240484|ref|ZP_02665416.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168264432|ref|ZP_02686405.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168465811|ref|ZP_02699693.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168823261|ref|ZP_02835261.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194442745|ref|YP_002039879.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194448720|ref|YP_002044671.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194471751|ref|ZP_03077735.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194736722|ref|YP_002113755.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197250303|ref|YP_002145612.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|198245247|ref|YP_002214626.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200389790|ref|ZP_03216401.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204930599|ref|ZP_03221529.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205351925|ref|YP_002225726.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207856103|ref|YP_002242754.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224582473|ref|YP_002636271.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238911587|ref|ZP_04655424.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|16419149|gb|AAL19588.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|62126869|gb|AAX64572.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161364511|gb|ABX68279.1| hypothetical protein SPAB_02915 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401408|gb|ACF61630.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194407024|gb|ACF67243.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194458115|gb|EDX46954.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194712224|gb|ACF91445.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195631937|gb|EDX50457.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197214006|gb|ACH51403.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197290404|gb|EDY29760.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|197939763|gb|ACH77096.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|199602235|gb|EDZ00781.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204320533|gb|EDZ05736.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205271706|emb|CAR36537.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205324158|gb|EDZ11997.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205331044|gb|EDZ17808.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205334030|gb|EDZ20794.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205339760|gb|EDZ26524.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205340474|gb|EDZ27238.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205347141|gb|EDZ33772.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206707906|emb|CAR32194.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467000|gb|ACN44830.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261245910|emb|CBG23711.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267992371|gb|ACY87256.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157238|emb|CBW16725.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911668|dbj|BAJ35642.1| D-alanyl-D-alanine carboxypeptidase DacA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320084907|emb|CBY94697.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321226217|gb|EFX51268.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322613231|gb|EFY10174.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322621299|gb|EFY18156.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322623719|gb|EFY20557.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628991|gb|EFY25770.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631713|gb|EFY28467.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637551|gb|EFY34253.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322641891|gb|EFY38521.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322646735|gb|EFY43241.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651436|gb|EFY47816.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653113|gb|EFY49447.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658833|gb|EFY55088.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664897|gb|EFY61090.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322668899|gb|EFY65051.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670595|gb|EFY66728.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675336|gb|EFY71412.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682193|gb|EFY78218.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684977|gb|EFY80974.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|322713701|gb|EFZ05272.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323128954|gb|ADX16384.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323193964|gb|EFZ79166.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323197944|gb|EFZ83066.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323202009|gb|EFZ87069.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207142|gb|EFZ92095.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323210407|gb|EFZ95298.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323214331|gb|EFZ99082.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323221482|gb|EGA05896.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323231084|gb|EGA15200.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323234084|gb|EGA18173.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238221|gb|EGA22279.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323242545|gb|EGA26569.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248478|gb|EGA32412.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323259234|gb|EGA42877.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261642|gb|EGA45217.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264824|gb|EGA48325.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323272339|gb|EGA55746.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326622381|gb|EGE28726.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326626964|gb|EGE33307.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332987582|gb|AEF06565.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 403

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 82/289 (28%), Positives = 135/289 (46%), Gaps = 19/289 (6%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNKNQMT 67
             + +  R +Q M     L    IS A             +      S I+ID N  ++ 
Sbjct: 1   MKTTFSARFMQRMALTTALCAAFISTAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVL 60

Query: 68  GFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYL 120
             +  DE R PASLTKMMT Y+I + +++ K      + V   A        +  S ++L
Sbjct: 61  AEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDAWATGNPVFKGSSLMFL 120

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           K        Q I  +  +S ND   A  +F +GS+  F  LM++    +G++NT ++   
Sbjct: 121 KPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVH 180

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
           GL    Q ++ARD A++G  L ++ P  Y  +  ++F +      N N LL     N+DG
Sbjct: 181 GLDADGQYSSARDMALIGQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDG 240

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           IKTG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T   
Sbjct: 241 IKTGHTSKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLTWGF 289


>gi|83952372|ref|ZP_00961103.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius
           nubinhibens ISM]
 gi|83836045|gb|EAP75343.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius
           nubinhibens ISM]
          Length = 491

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 94/237 (39%), Positives = 138/237 (58%), Gaps = 2/237 (0%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +VID    ++   +  D   +PASLTKMMTLY++FE +++ ++ L+  I +S+ AA++ P
Sbjct: 17  MVIDARSGEVLHSRNADSRLHPASLTKMMTLYVVFEAVENGEISLDDTITISRHAASEPP 76

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           SKL L+          I A   +SAND +TA GE I GSE +FA  M+  AK +GM  T 
Sbjct: 77  SKLGLRAGQKIKLRYLIRAAAVKSANDAATALGEAIEGSEARFARRMTRTAKALGMTRTT 136

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN-KLLNKM 234
           +KNA GL +   ++TARD   LG  L  +FP+YY  FS  +     R ++N N +LL+  
Sbjct: 137 FKNAHGLTEDGHLSTARDMTTLGRHLFYDFPEYYNLFSRVETDAGVRSVSNTNRRLLSAY 196

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
              DGIKTGYTR +GFN+V S    ++ I+A V G  +S  R+ +  EL+     + 
Sbjct: 197 KGADGIKTGYTRAAGFNLVASAERGNERIIATVFGGRSSHSRNAEVAELLDLGFARA 253


>gi|84516588|ref|ZP_01003947.1| Probable penicillin-binding protein [Loktanella vestfoldensis
           SKA53]
 gi|84509624|gb|EAQ06082.1| Probable penicillin-binding protein [Loktanella vestfoldensis
           SKA53]
          Length = 521

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 93/259 (35%), Positives = 143/259 (55%), Gaps = 3/259 (1%)

Query: 36  FLSIIMISMASELH-AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
           F  +I I +A+ +      Y+++V+D    ++   +  D   +PASLTKMMTLY+ F+ +
Sbjct: 15  FCVLIFILIAAPIRGVAAPYAALVMDARTGEVLHARNADTRLHPASLTKMMTLYVAFQAI 74

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           +  ++ L+T++ V+  AA + PSKL L+          I A   RSAND +TA G  ISG
Sbjct: 75  ERGEISLDTEVTVTSHAANEPPSKLGLRAGQRIRLRYLIRAAAVRSANDAATAIGIAISG 134

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           SE+ FA  M+  A  +GM NT ++NA GL     ++TARD ++LG  +  +FPQYY  FS
Sbjct: 135 SEEAFATRMNQTAAAMGMSNTTFRNAHGLTQSGHLSTARDMSVLGRHVIYDFPQYYNLFS 194

Query: 214 IRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            R        + + N + L+     DGIKTG+T  SGF++V S +  D  I+A V G  +
Sbjct: 195 RRTADAGVATVQHTNRRWLDSYPGGDGIKTGFTNASGFSLVASAQRGDQRIIATVFGGTS 254

Query: 273 SQERDQKALELITSFLEKK 291
           +  R+ +  EL+       
Sbjct: 255 TAARNARISELMDMGFSTA 273


>gi|145639682|ref|ZP_01795285.1| hypothetical protein CGSHiII_09201 [Haemophilus influenzae PittII]
 gi|145271239|gb|EDK11153.1| hypothetical protein CGSHiII_09201 [Haemophilus influenzae PittII]
 gi|309750652|gb|ADO80636.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
           [Haemophilus influenzae R2866]
          Length = 393

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 86/287 (29%), Positives = 150/287 (52%), Gaps = 18/287 (6%)

Query: 33  KILFLSIIMISMASELHA--------KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASL 80
           KI F+S  +   A  + A         P+ ++   +++D N   +      D+ +YPASL
Sbjct: 7   KIAFVSSFVALSAFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASL 66

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALIT 137
           TKMMT Y++   L+  K+H    + + ++A  +N    SK++L   T  +       +I 
Sbjct: 67  TKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIV 126

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND + A  E ISG+   F   M+   ++ G++NT +    GL D NQ ++ARD AI+
Sbjct: 127 VSGNDATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAII 186

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
           G  + ++ P+ YK +S + F +      N N LL  K  N+DG+KTG+T  +G+N+V S 
Sbjct: 187 GAHIIRDLPEEYKIYSEKNFTFNKIKQANRNGLLWDKTINVDGMKTGHTSQAGYNLVASA 246

Query: 257 -RYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHRK 301
               +  +++VVMG+PT + R+ ++ +L+       +T K  +  ++
Sbjct: 247 TTSNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKE 293


>gi|83593448|ref|YP_427200.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodospirillum rubrum
           ATCC 11170]
 gi|83576362|gb|ABC22913.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodospirillum rubrum
           ATCC 11170]
          Length = 468

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 107/284 (37%), Positives = 169/284 (59%), Gaps = 4/284 (1%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYII 89
           +  +  L+++ + +     A   Y+SIV+D +  ++   +  + R YPASLTKMMTLY++
Sbjct: 25  LRILAMLAVVFLLLGLPTQAFAGYASIVVDASTGRVLQARNADMRNYPASLTKMMTLYLL 84

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           FE + + K  L +++PVSK AA Q PSKL +   T    E  I AL+T+SANDV+    E
Sbjct: 85  FEAIDNGKYTLESRLPVSKWAANQAPSKLGVAAGTGIKVEHAIKALVTKSANDVAVVIAE 144

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            + G+E  F+ LM+ KA  +GM  T ++NASGL +  Q+TTARD A+L + L ++FP +Y
Sbjct: 145 ALGGTEANFSALMTRKAAALGMSQTTFRNASGLPNNGQMTTARDMAVLSMALIRHFPNHY 204

Query: 210 KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           ++F+ + FR+ NR IT HN ++ +    DG+KTGY + SGFN+ +S       +VAVV G
Sbjct: 205 RFFATQSFRFGNRTITTHNHVVREYPGADGLKTGYIQASGFNVASSAVRNGRRLVAVVFG 264

Query: 270 MPTSQERDQKALELITSFLEKKTLKHQ---QTHRKDNLSSTSLK 310
             T++ RD + + L+         +     Q  RK +  ++ +K
Sbjct: 265 GQTARARDTQMMALLDEGFATLAREGGSVVQAKRKPDAIASIIK 308


>gi|311280463|ref|YP_003942694.1| Beta-lactamase [Enterobacter cloacae SCF1]
 gi|308749658|gb|ADO49410.1| Beta-lactamase [Enterobacter cloacae SCF1]
          Length = 399

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 80/279 (28%), Positives = 138/279 (49%), Gaps = 22/279 (7%)

Query: 32  GKILFLSIIMISMASELHAKP--------------KYSSIVIDVNKNQMTGFKQ-DEPRY 76
            ++L  ++ + +++S  HA                  S I+ID N  ++   +  DE R 
Sbjct: 7   ARLLITALSVAALSSAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADERRD 66

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQ 130
           PASLTKMMT Y+I + +++ K   +  + V   A        +  S ++LK        Q
Sbjct: 67  PASLTKMMTSYVIGQAMKAGKFKDSDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQ 126

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            I  +  +S ND   A  ++++GS+  F  LM+N    +G++NT ++   GL    Q ++
Sbjct: 127 LIRGINLQSGNDACVAMADYVAGSQDAFVGLMNNYVNALGLKNTHFQTVHGLDADGQYSS 186

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSG 249
           ARD A++G  L ++ P  Y  +  ++F +      N N LL     N+DGIKTG+T  +G
Sbjct: 187 ARDMALIGQALIRDVPNEYSIYREKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAG 246

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +N+V S       +V+ VMG  T + R+ ++ +L+T   
Sbjct: 247 YNLVASATEGQMRLVSAVMGGRTYKGRETESKKLLTWGF 285


>gi|294676715|ref|YP_003577330.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacter capsulatus SB
           1003]
 gi|294475535|gb|ADE84923.1| D-alanyl-D-alanine carboxypeptidase-1 [Rhodobacter capsulatus SB
           1003]
          Length = 538

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 97/293 (33%), Positives = 149/293 (50%), Gaps = 3/293 (1%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
            L+I +  +   L A P +++ V+D    ++   K  D   +PASLTKMMTLYI F+ ++
Sbjct: 12  LLAIFLAVLPVALSAAP-FAAYVMDARTGEVLYEKNADTRLHPASLTKMMTLYIAFQAIE 70

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
           S +  L+T + VS  AA Q PS+L L+          I     +SAND + A G+F+ G 
Sbjct: 71  SGEASLDTMVTVSANAAGQAPSRLGLRTGQKIALRYLIRGAAIKSANDAAAAIGDFLEGD 130

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           E  FA  M+  AK +GM+NT +KNA+GL     ++TA D +ILG  L  +FPQYY  FS 
Sbjct: 131 EAHFAARMNRTAKALGMKNTTFKNANGLTKAGHLSTAHDMSILGRHLLYDFPQYYNLFSR 190

Query: 215 RKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           R        + N N + L+     DGIKTGYT  +GFN+  S +  +  I+A + G  + 
Sbjct: 191 RTADAGIAHVANTNRRFLDAYDGADGIKTGYTVPAGFNLTASAQRGNKRIIATIFGGTSP 250

Query: 274 QERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
             R+ K  EL+    E+   K      +  +   + +  +   +++       
Sbjct: 251 AARNSKMAELMDLGFERAPGKVNAQKPEPPMLMANAESDIAGPQVEAAQEAED 303


>gi|300935769|ref|ZP_07150733.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1]
 gi|300974063|ref|ZP_07172437.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           200-1]
 gi|300308960|gb|EFJ63480.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           200-1]
 gi|300459040|gb|EFK22533.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1]
 gi|315285607|gb|EFU45049.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           110-3]
 gi|324015750|gb|EGB84969.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 60-1]
          Length = 347

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 126/242 (52%), Gaps = 8/242 (3%)

Query: 59  IDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---- 113
           +D    Q+     + + R PASLTK+MT Y++   + S ++  +  + V + A  +    
Sbjct: 1   MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60

Query: 114 --NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S ++LKE    +       LI  S ND   A  ++I+G +++F  +M+N A+K+ +
Sbjct: 61  FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL
Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180

Query: 232 N-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
             K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R+++A +L+    + 
Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240

Query: 291 KT 292
            T
Sbjct: 241 FT 242


>gi|300898616|ref|ZP_07116943.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           198-1]
 gi|300956273|ref|ZP_07168579.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           175-1]
 gi|405953|gb|AAA16416.1| yeeC [Escherichia coli]
 gi|300316896|gb|EFJ66680.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           175-1]
 gi|300357712|gb|EFJ73582.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           198-1]
          Length = 347

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 126/242 (52%), Gaps = 8/242 (3%)

Query: 59  IDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---- 113
           +D    Q+     + + R PASLTK+MT Y++   + S ++  +  + V + A  +    
Sbjct: 1   MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60

Query: 114 --NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S ++LKE    +       LI  S ND   A  ++I+G +++F  +M+N A+K+ +
Sbjct: 61  FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL
Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180

Query: 232 N-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
             K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R+++A +L+    + 
Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240

Query: 291 KT 292
            T
Sbjct: 241 FT 242


>gi|300903877|ref|ZP_07121778.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1]
 gi|301307141|ref|ZP_07213170.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           124-1]
 gi|300404135|gb|EFJ87673.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1]
 gi|300837656|gb|EFK65416.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           124-1]
 gi|315253360|gb|EFU33328.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 85-1]
          Length = 347

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 126/242 (52%), Gaps = 8/242 (3%)

Query: 59  IDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---- 113
           +D    Q+     + + R PASLTK+MT Y++   + S ++  +  + V + A  +    
Sbjct: 1   MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60

Query: 114 --NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S ++LKE    +       LI  S ND   A  ++I+G +++F  +M+N A+K+ +
Sbjct: 61  FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL
Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180

Query: 232 N-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
             K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R+++A +L+    + 
Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240

Query: 291 KT 292
            T
Sbjct: 241 FT 242


>gi|310815390|ref|YP_003963354.1| Probable penicillin-binding protein [Ketogulonicigenium vulgare
           Y25]
 gi|308754125|gb|ADO42054.1| Probable penicillin-binding protein [Ketogulonicigenium vulgare
           Y25]
          Length = 314

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 96/260 (36%), Positives = 140/260 (53%), Gaps = 3/260 (1%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEY 92
           +L   I+  +M S   A P Y+++V+D    Q+      D   +PASLTKMMTLYI F+ 
Sbjct: 12  LLAFIILCAAMMSHAFAAP-YAALVMDARTGQVLDSENADTRLHPASLTKMMTLYIAFQA 70

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           ++  ++ LN+Q+ VS  AA Q PS+L L+       +  I A   +SAND +TA G  IS
Sbjct: 71  IERGEVSLNSQVTVSANAAAQPPSRLGLRAGQRIELQYLIRAAAIKSANDAATAIGVGIS 130

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           GSE+ FA  M+  A+ +GM NT + + +GL      +TARD  ILG  L  +FPQYY  F
Sbjct: 131 GSEEAFAARMNATARAMGMNNTHFISMNGLTTNGHYSTARDMTILGRHLIYDFPQYYNLF 190

Query: 213 SIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           S R        +   N +LL+     DGIKTGYT+ +G+N+  S    +  I+A V G  
Sbjct: 191 SRRSADAGIATVRTTNSRLLDNYQGADGIKTGYTQAAGYNLTASAERGNVRIIATVFGAT 250

Query: 272 TSQERDQKALELITSFLEKK 291
           ++ +R  +   L+       
Sbjct: 251 SNADRHTRITRLMDRGFANA 270


>gi|295706485|ref|YP_003599560.1| D-alanine-D-alanine carboxypetidase [Bacillus megaterium DSM 319]
 gi|294804144|gb|ADF41210.1| D-alanine-D-alanine carboxypetidase [Bacillus megaterium DSM 319]
          Length = 388

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 156/301 (51%), Gaps = 14/301 (4%)

Query: 24  IQRNIQLMGKILFLSIIMI--SMASELH----AKPKYSSIVIDVNKNQMTGFKQ-DEPRY 76
           ++R I  +  ++FL  +M    +A+E      A    S+I+I+ +  ++   K  ++   
Sbjct: 1   MKRTIVKLLVVIFLFPLMTQPVLAAEKKNSELADSARSAILIERDTGKILYEKNSNQELP 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +I E L   K+ L  ++  S+ AA+   S+++L+     T    +  + 
Sbjct: 61  PASMTKIMTMILIMEALDKGKITLKDKVRASEYAASMGGSQIFLEPGEEMTVNDLLKGIA 120

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND S A  E ++GSE+KF   M+ KAK++G+ +T ++N +GL  +N  +TA D A+
Sbjct: 121 IGSGNDASMAMAEHLAGSEEKFVAKMNQKAKELGLTHTKFQNPTGLPVENHYSTAHDMAM 180

Query: 197 LGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +G  L K + +   Y S     +R    +   + N N+L+     +DG+KTG+T  + + 
Sbjct: 181 MGRELLK-YEKIINYTSKYEAYLRTDTDKKFWLVNTNRLVKFYPGVDGLKTGFTGQAKYC 239

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
           +  + +  +  ++AVV G  T ++R+ +  +++     + T K     + D ++   + K
Sbjct: 240 LTATAKKGNMRVLAVVFGASTPKDRNNQVTKMLDYAFSQYTTK-PLYKKGDVITKIDVNK 298

Query: 312 S 312
            
Sbjct: 299 G 299


>gi|260432451|ref|ZP_05786422.1| D-alanyl-D-alanine carboxypeptidase family protein [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416279|gb|EEX09538.1| D-alanyl-D-alanine carboxypeptidase family protein [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 475

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 98/263 (37%), Positives = 146/263 (55%), Gaps = 2/263 (0%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
            G  L   I + ++A+       Y+++VID    ++   +  D   +PASLTKMMTLYI 
Sbjct: 11  AGLFLIAMIWIAAVAATQALAAPYAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYIA 70

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           FE +++ ++ L+T + ++K AA + PSKL L+          I A   +SAND +TA G 
Sbjct: 71  FEAVRNGEITLDTPVTITKAAAAEPPSKLGLRAGQKIAFRYLIRAAAVKSANDAATAIGI 130

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            +SGSE  FA  M+  AK +GM  T +KNA GL +   ++TARD   LG  L  ++P+YY
Sbjct: 131 ALSGSEAAFARRMTRTAKAMGMSRTTFKNAHGLTEPGHLSTARDMTTLGRHLLYDYPEYY 190

Query: 210 KYFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             FS +      + + N N +LL      DGIKTGYTR +GFN+V S +  ++ I+A V 
Sbjct: 191 NLFSRQSTYAGIKTVPNTNRRLLAAYKGADGIKTGYTRAAGFNLVASAKRGNERIIATVF 250

Query: 269 GMPTSQERDQKALELITSFLEKK 291
           G  +S  R+ K  EL+     + 
Sbjct: 251 GGKSSAWRNAKVAELLDLGFRRA 273


>gi|315296383|gb|EFU55683.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 16-3]
          Length = 347

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 126/242 (52%), Gaps = 8/242 (3%)

Query: 59  IDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---- 113
           +D    Q+     + + R PASLTK+MT Y++   + S ++  +  + V + A  +    
Sbjct: 1   MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60

Query: 114 --NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S ++LKE    +       LI  S ND   A  ++I+G +++F  +M+N A+K+ +
Sbjct: 61  FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL
Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180

Query: 232 N-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
             K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R+++A +L+    + 
Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240

Query: 291 KT 292
            T
Sbjct: 241 FT 242


>gi|213646564|ref|ZP_03376617.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
          Length = 427

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 136/293 (46%), Gaps = 19/293 (6%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNK 63
           +     + +  R +Q M     L    IS A             +      S I+ID N 
Sbjct: 21  VVQTMKTTFSARFMQRMALTTALCATFISTAHADDLNIKTMTPGVPQIDAESYILIDYNS 80

Query: 64  NQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPS 116
            ++   +  DE R PASLTKMMT Y+I + +++ K      + V   A        +  S
Sbjct: 81  GKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDAWATGNPVFKGSS 140

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
            ++LK        Q I  +  +S ND   A  +F +GS+  F  LM++    +G++NT +
Sbjct: 141 LMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHF 200

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH- 235
           +   GL    Q ++ARD A++G  L ++ P  Y  +  ++F +      N N LL     
Sbjct: 201 QTVHGLDADGQYSSARDMALIGQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWDNSL 260

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           N+DGIKTG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T   
Sbjct: 261 NVDGIKTGHTSKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLTWGF 313


>gi|153009349|ref|YP_001370564.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi
           ATCC 49188]
 gi|151561237|gb|ABS14735.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi
           ATCC 49188]
          Length = 469

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 118/266 (44%), Positives = 169/266 (63%), Gaps = 5/266 (1%)

Query: 32  GKILFLSIIMISMA----SELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTL 86
             +L   +   S A      + A  +Y++IVID N  +       D  RYPASLTKMMTL
Sbjct: 18  ATLLLAVVTGCSTASTTIPAIAASDRYAAIVIDANTGKTLFASNADAQRYPASLTKMMTL 77

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y++FE +Q+ +++ +T+IPVS  AA + P+K+  +       E   LA+IT+SANDV+TA
Sbjct: 78  YMLFEAMQAGRMNKDTRIPVSAYAAARPPTKIGFRSGQSIRAEDAALAMITKSANDVATA 137

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
            GE+I GSE++FA +M+ KA+++GM+NT ++NASGL +  Q TTARD AIL I LR++FP
Sbjct: 138 VGEYIGGSEERFAQMMTAKARRLGMRNTTFRNASGLPNMAQHTTARDMAILSIALRQHFP 197

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
             + YFS R F +R + I  HN+LL ++  +DGIKTGYT  SG+N+ +S+      +VAV
Sbjct: 198 NEFSYFSRRSFVFRGQTINGHNRLLGRVEGVDGIKTGYTNASGYNLASSVSLDGRRLVAV 257

Query: 267 VMGMPTSQERDQKALELITSFLEKKT 292
           VMG  T   RD    +LI  +L   T
Sbjct: 258 VMGGNTGASRDAHMTQLIRKYLPMAT 283


>gi|332559150|ref|ZP_08413472.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
           WS8N]
 gi|332276862|gb|EGJ22177.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
           WS8N]
          Length = 463

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 97/260 (37%), Positives = 142/260 (54%), Gaps = 3/260 (1%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEY 92
           +LF+ + M+  A    A P Y++IV+D    +       E R +PASLTKMMTLYI F+ 
Sbjct: 1   MLFVFVAMVMAAQSAVAAP-YAAIVMDARTGETLYETNSETRLHPASLTKMMTLYITFQA 59

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           +Q  ++ L++ + V+K AA + PSKL LK          I A   +SAND +TA  E + 
Sbjct: 60  IQRGEISLDSLVTVTKNAAAEPPSKLGLKSGQRIALRYLIRAAAVKSANDAATAICEAVG 119

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           GSE  FA  M+  AK IGM  T +KN +GL  +  ++TA D  +LG  L  +FPQYY  F
Sbjct: 120 GSEAAFAERMNRTAKAIGMTKTTFKNCNGLTAEGHLSTAHDMNVLGRRLFFDFPQYYNIF 179

Query: 213 SIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           S R+       + N N + L+     DGIKTGYT  +G+N+  S +  +  I+A V G  
Sbjct: 180 SRRRADAGVTTVANTNTRFLDAYKGADGIKTGYTSPAGYNLTASAQRGNKRIIATVFGGK 239

Query: 272 TSQERDQKALELITSFLEKK 291
           ++  R+ K  +L+     + 
Sbjct: 240 STAHRNAKMADLLDLGFREA 259


>gi|167567676|ref|ZP_02360592.1| family S11 unassigned peptidase [Burkholderia oklahomensis EO147]
          Length = 328

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 70/273 (25%), Positives = 136/273 (49%), Gaps = 13/273 (4%)

Query: 29  QLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
           +++G +L ++  + +  ++    P     S +V+D +  +          R PASLTK+M
Sbjct: 24  RILGAMLVVATSIAANGAQASPAPQIQAVSWLVVDADSGKTLAEHNVSARREPASLTKLM 83

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSAN 141
           T Y+  + L+   L  + ++ ++         + +++YL           +  LI  SAN
Sbjct: 84  TAYLALDALKQGTLRWDEKVEIAADDIASVGNDEARMYLAPGQRVQVRDLVRGLIVASAN 143

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D +    + I GS   FA  M++ A+++GM+++ + + SG+   +  +TA D +IL   L
Sbjct: 144 DAALVLAKRIGGSPAGFAKRMNDAAQRLGMRDSHFVSPSGITTPDHYSTAHDLSILARHL 203

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK-- 259
            ++FP++Y + S + F Y     TN N+LL     +DG+KTG+T  +G+ +V + +    
Sbjct: 204 NQDFPEFYTFSSQQHFEYGKFAKTNKNRLLRADPTVDGMKTGHTNAAGWCMVVTAKRGVA 263

Query: 260 ----DDPIVAVVMGMPTSQERDQKALELITSFL 288
                  ++AV++G PT ++R   A  L+    
Sbjct: 264 GSHAKHRVIAVLLGEPTEKQRLADAKRLLDWGF 296


>gi|16759596|ref|NP_455213.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29142631|ref|NP_805973.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56414228|ref|YP_151303.1| D-alanyl-D-alanine carboxypeptidase subunit A [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363151|ref|YP_002142788.1| D-alanyl-D-alanine carboxypeptidase subunit A [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|25297769|pir||AH0580 D-alanine carboxypeptidase [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16501888|emb|CAD05114.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138262|gb|AAO69833.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56128485|gb|AAV77991.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197094628|emb|CAR60150.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 403

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 82/289 (28%), Positives = 135/289 (46%), Gaps = 19/289 (6%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNKNQMT 67
             + +  R +Q M     L    IS A             +      S I+ID N  ++ 
Sbjct: 1   MKTTFSARFMQRMALTTALCATFISTAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVL 60

Query: 68  GFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYL 120
             +  DE R PASLTKMMT Y+I + +++ K      + V   A        +  S ++L
Sbjct: 61  AEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDAWATGNPVFKGSSLMFL 120

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           K        Q I  +  +S ND   A  +F +GS+  F  LM++    +G++NT ++   
Sbjct: 121 KPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVH 180

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
           GL    Q ++ARD A++G  L ++ P  Y  +  ++F +      N N LL     N+DG
Sbjct: 181 GLDADGQYSSARDMALIGQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDG 240

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           IKTG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T   
Sbjct: 241 IKTGHTSKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLTWGF 289


>gi|153838852|ref|ZP_01991519.1| penicillin-binding protein 5 [Vibrio parahaemolyticus AQ3810]
 gi|260900530|ref|ZP_05908925.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus AQ4037]
 gi|149747680|gb|EDM58590.1| penicillin-binding protein 5 [Vibrio parahaemolyticus AQ3810]
 gi|308107023|gb|EFO44563.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus AQ4037]
          Length = 389

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 75/258 (29%), Positives = 136/258 (52%), Gaps = 8/258 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
           F +  ++  A EL ++     +++D +  ++   +  + R  PASLTK+MT Y+  + + 
Sbjct: 23  FAAPTVVPNAPELSSR---GYVLMDYHTGKVLVERDADKRLNPASLTKLMTAYVAGQEVN 79

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
           +  + L+ Q+ +S+ A  +N    SK++++  T  +       L+ +S ND S A  E +
Sbjct: 80  AGNISLDDQVVISRNAWAKNFPDSSKMFIEVNTSVSLSDLYRGLVVQSGNDASVAIAEHV 139

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  F  LM++ A ++G+ N+ + N  GL      +T  D A LG  + ++ P  Y  
Sbjct: 140 AGSEAGFVSLMNSWASQLGLTNSSFTNPHGLDSDGLYSTPHDIAKLGQAIIRDLPDIYPM 199

Query: 212 FSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S   F Y      N N LL  +  N+DG+KTGYT  +G+++ TS    D  ++AVVMG 
Sbjct: 200 YSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYSLATSATNGDMRLIAVVMGA 259

Query: 271 PTSQERDQKALELITSFL 288
            +   R+ ++ +L++   
Sbjct: 260 KSQSVRESESKQLLSYGF 277


>gi|28901151|ref|NP_800806.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260362712|ref|ZP_05775581.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus K5030]
 gi|260879998|ref|ZP_05892353.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus AN-5034]
 gi|260894673|ref|ZP_05903169.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus Peru-466]
 gi|28809664|dbj|BAC62639.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308086579|gb|EFO36274.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus Peru-466]
 gi|308091747|gb|EFO41442.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus AN-5034]
 gi|308112412|gb|EFO49952.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus K5030]
          Length = 389

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 75/258 (29%), Positives = 135/258 (52%), Gaps = 8/258 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
           F +  ++  A EL ++     +++D +  ++   +  + R  PASLTK+MT Y+  + + 
Sbjct: 23  FAAPTVVPNAPELSSR---GYVLMDYHTGKVLVERDADKRLNPASLTKLMTAYVAGQEVN 79

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
           +  + L+ Q+ +S+ A  +N    SK++++  T          L+ +S ND S A  E +
Sbjct: 80  AGNISLDDQVVISRNAWAKNFPDSSKMFIEVNTSVPLSDLYRGLVVQSGNDASVAIAEHV 139

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  F  LM++ A ++G+ N+ + N  GL      +T  D A LG  + ++ P  Y  
Sbjct: 140 AGSEAGFVSLMNSWASQLGLTNSSFTNPHGLDSDGLYSTPHDIAKLGQAIIRDLPDIYPM 199

Query: 212 FSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S   F Y      N N LL  +  N+DG+KTGYT  +G+++ TS    D  ++AVVMG 
Sbjct: 200 YSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYSLATSATNGDMRLIAVVMGA 259

Query: 271 PTSQERDQKALELITSFL 288
            +   R+ ++ +L++   
Sbjct: 260 KSQSVRESESKQLLSYGF 277


>gi|323493053|ref|ZP_08098187.1| D-alanyl-D-alanine carboxypeptidase [Vibrio brasiliensis LMG 20546]
 gi|323312701|gb|EGA65831.1| D-alanyl-D-alanine carboxypeptidase [Vibrio brasiliensis LMG 20546]
          Length = 398

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 85/316 (26%), Positives = 152/316 (48%), Gaps = 19/316 (6%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           +   L LS    +  + +   P   +   I++D +   +   K  D+   PASLTK+MT 
Sbjct: 21  LLSTLSLSFGAFAAPTIIPDPPALGAKGYILLDYHTGTVLVEKNADKKLNPASLTKLMTA 80

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDV 143
           Y+  + ++S  + L+ Q+ +S+ A  +N    SK++++  T          LI +S ND 
Sbjct: 81  YVAGQEVKSGNISLDDQVRISRNAWAKNFPDSSKMFIEVGTDVELMDLYRGLIVQSGNDA 140

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           S A  E ++GSE  F  LM++ ++K+G++NT Y N  GL  +   +T  D A L   + +
Sbjct: 141 SVAIAEHVAGSEDAFVSLMNSWSQKLGLENTAYTNPHGLDSQGLYSTPHDIARLSQAIIR 200

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           + P  Y  +S   F Y      N N LL  +  N+DG+KTGYT  +G+++ TS    D  
Sbjct: 201 DLPDIYPLYSETAFTYNGITQYNRNGLLRDRSLNVDGMKTGYTSGAGYSLATSATNGDMR 260

Query: 263 IVAVVMGMPTSQERDQKALELITSFLE----------KKTLKHQQTH-RKDNLSSTSLKK 311
           +V+VVMG  +++ R+ ++ +L++                TL   +      +     +++
Sbjct: 261 LVSVVMGSSSTKSRESESKQLLSYGFRFFDTVSPTKVTDTLAEAKVWMGTVDAVPVGIEE 320

Query: 312 SLMIKKLKRTYSQFKK 327
            ++I   K    + K 
Sbjct: 321 PVLITLPKGDAKKLKA 336


>gi|312622222|ref|YP_004023835.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202689|gb|ADQ46016.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 386

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 81/280 (28%), Positives = 139/280 (49%), Gaps = 14/280 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I++D +  ++   K   E   PAS+TK+MT+ +I E ++  K+ L+ ++  S+ A+
Sbjct: 41  AKSAILVDFDTGKILYEKNSHEKLPPASITKIMTMILICEAIEKGKIKLSDKVVASQNAS 100

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S++YLKE    T E+ + ++   SAND   A  E I+GS ++F  +M+ KAK+ GM
Sbjct: 101 SLGGSQVYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYMMNKKAKEFGM 160

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKN-FPQYYKYFSIRKFRYRNRIITNHNKL 230
            +T + N  GL  +N  T+A D AI+   L K+   + Y    +   R     +TN NKL
Sbjct: 161 LDTNFVNPYGLDAENHYTSAYDVAIMSRELLKHKIIRKYLTTWVDTIREGKFGLTNTNKL 220

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +       G+KTG T  + F +  S       ++AV+MG P S+ R  +A +L+      
Sbjct: 221 VRFYRGCTGVKTGSTDKAKFCVSASALRNGLHLIAVIMGAPDSKTRFNEATKLLDWGFAN 280

Query: 291 KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
            ++             +   K     K+K      K+++A
Sbjct: 281 FSMY------------SPYSKGYCFGKVKVKNGIEKEVEA 308


>gi|117624214|ref|YP_853127.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli APEC O1]
 gi|301019170|ref|ZP_07183370.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1]
 gi|301050040|ref|ZP_07196954.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           185-1]
 gi|301648516|ref|ZP_07248240.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           146-1]
 gi|309797269|ref|ZP_07691664.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           145-7]
 gi|331658091|ref|ZP_08359053.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli TA206]
 gi|115513338|gb|ABJ01413.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
           [Escherichia coli APEC O1]
 gi|300298224|gb|EFJ54609.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           185-1]
 gi|300399363|gb|EFJ82901.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1]
 gi|301073419|gb|EFK88225.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           146-1]
 gi|308119144|gb|EFO56406.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           145-7]
 gi|320198701|gb|EFW73301.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli EC4100B]
 gi|323183797|gb|EFZ69188.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 1357]
 gi|323951763|gb|EGB47637.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H252]
 gi|323972841|gb|EGB68040.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TA007]
 gi|324008953|gb|EGB78172.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 57-2]
 gi|326338366|gb|EGD62194.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           1044]
 gi|326347113|gb|EGD70846.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           1125]
 gi|331056339|gb|EGI28348.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 6b)
           (PBP-6b) [Escherichia coli TA206]
          Length = 347

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 126/242 (52%), Gaps = 8/242 (3%)

Query: 59  IDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---- 113
           +D    Q+     + + R PASLTK+MT Y++   + S ++  +  + V + A  +    
Sbjct: 1   MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60

Query: 114 --NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S ++LKE    +       LI  S ND   A  ++I+G +++F  +M+N A+K+ +
Sbjct: 61  FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL
Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180

Query: 232 N-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
             K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R+++A +L+    + 
Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240

Query: 291 KT 292
            T
Sbjct: 241 FT 242


>gi|145629114|ref|ZP_01784913.1| hypothetical protein CGSHi22121_09940 [Haemophilus influenzae
           22.1-21]
 gi|144978617|gb|EDJ88340.1| hypothetical protein CGSHi22121_09940 [Haemophilus influenzae
           22.1-21]
          Length = 393

 Score =  282 bits (721), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 86/287 (29%), Positives = 150/287 (52%), Gaps = 18/287 (6%)

Query: 33  KILFLSIIMISMASELHA--------KPKYSS---IVIDVNKNQMT-GFKQDEPRYPASL 80
           KI FLS  +   +  + A         P+ ++   +++D N   +      D+ +YPASL
Sbjct: 7   KIAFLSSFVALSSFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASL 66

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALIT 137
           TKMMT Y++   L+  K+H    + + ++A  +N    SK++L   T  +       +I 
Sbjct: 67  TKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIV 126

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND + A  E ISG+   F   M+   ++ G++NT +    GL D NQ ++ARD AI+
Sbjct: 127 VSGNDATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAII 186

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
           G  + ++ P+ YK +S + F +      N N LL  K  N+DG+KTG+T  +G+N+V S 
Sbjct: 187 GAHIIRDLPEEYKIYSEKNFTFNKIKQANRNGLLWDKTINVDGMKTGHTSQAGYNLVASA 246

Query: 257 -RYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHRK 301
               +  +++VVMG+PT + R+ ++ +L+       +T K  +  ++
Sbjct: 247 TTSNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKE 293


>gi|324016991|gb|EGB86210.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           117-3]
          Length = 347

 Score =  281 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 126/242 (52%), Gaps = 8/242 (3%)

Query: 59  IDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---- 113
           +D    Q+     + + R PASLTK+MT Y++   + S ++  +  + V + A  +    
Sbjct: 1   MDYTTGQILTAVNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60

Query: 114 --NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S ++LKE    +       LI  S ND   A  ++I+G +++F  +M+N A+K+ +
Sbjct: 61  FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL
Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180

Query: 232 N-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
             K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R+++A +L+    + 
Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240

Query: 291 KT 292
            T
Sbjct: 241 FT 242


>gi|261341254|ref|ZP_05969112.1| D-alanyl-D-alanine carboxypeptidase DacA [Enterobacter cancerogenus
           ATCC 35316]
 gi|288316558|gb|EFC55496.1| D-alanyl-D-alanine carboxypeptidase DacA [Enterobacter cancerogenus
           ATCC 35316]
          Length = 403

 Score =  281 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 146/306 (47%), Gaps = 22/306 (7%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADARRDPASLTKMMTSYVIGQAMKAGKFK 93

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A        +  S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 94  ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++N+ ++   GL  + Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVTALGLKNSHFQTVHGLDAEGQYSSARDMALIGQALIRDVPNEYTIYK 213

Query: 214 IRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +     TN N LL     N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 214 EKEFTFNGIRQTNRNGLLWDNSLNVDGIKTGHTEKAGYNLVASATEGQMRLISAVMGGRT 273

Query: 273 SQERDQKALELITS---FLEK-KTLKHQQ-------THRKDNLSSTSLKKSLMIKKLKRT 321
            + R+ ++ +L+T    F E    LK  +           ++ +S  + K L +   +  
Sbjct: 274 FKGRETESKKLLTWGFRFFETVNPLKAGKEFASEPVWFGDNDRASLGVDKDLYLTIPRGR 333

Query: 322 YSQFKK 327
               K 
Sbjct: 334 MKDLKA 339


>gi|312127393|ref|YP_003992267.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777412|gb|ADQ06898.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 386

 Score =  281 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 80/284 (28%), Positives = 141/284 (49%), Gaps = 14/284 (4%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I++D +  ++   K   E   PAS+TK+MT+ +I E ++  ++ L+ ++  S+ A+
Sbjct: 41  AKSAILVDFDTGKILYEKNSHEKLPPASITKIMTMILICEAIEKGRIKLSDRVIASQNAS 100

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S++YLKE    T E+ + ++   SAND   A  E I+GS ++F  +M+ KAK++GM
Sbjct: 101 SLGGSQIYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYMMNKKAKELGM 160

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKN-FPQYYKYFSIRKFRYRNRIITNHNKL 230
            +T + N  GL  +N  T+A D AI+   L K+   + Y    +   R     +TN NKL
Sbjct: 161 LDTNFVNPYGLDAENHYTSAYDVAIMSRELLKHKIIRKYLTTWVDTIREGKFGLTNTNKL 220

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +       G+KTG T  + F +  S       ++AV+MG P S+ R  +A +L+      
Sbjct: 221 VRFYRGCTGVKTGSTDKAKFCVSASALRNGLHLIAVIMGAPDSKTRFNEATKLLDWGFAN 280

Query: 291 KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
            ++             +   K     K+K      K+++A   +
Sbjct: 281 FSMY------------SPYSKGYCFGKVKVKNGIEKEVEAILST 312


>gi|262041277|ref|ZP_06014488.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259041393|gb|EEW42453.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 423

 Score =  281 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 78/256 (30%), Positives = 131/256 (51%), Gaps = 11/256 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI  A ++ A+   S I+ID N  ++      D  R PASLTKMMT Y+I + +++ K  
Sbjct: 57  MIPGAPQIDAE---SWILIDYNSGKVLAENNADSRRDPASLTKMMTSYVIGQAMKAGKFK 113

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            +  + V   A        +  S ++LK        Q I  +  +S ND   A  ++++G
Sbjct: 114 ESDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYVAG 173

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+N    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 174 SQDAFVSLMNNYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYR 233

Query: 214 IRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL     N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 234 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 293

Query: 273 SQERDQKALELITSFL 288
            + R+ ++ +L+T   
Sbjct: 294 FKGRESESKKLLTWGF 309


>gi|241204910|ref|YP_002976006.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240858800|gb|ACS56467.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 292

 Score =  281 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 103/260 (39%), Positives = 159/260 (61%), Gaps = 2/260 (0%)

Query: 32  GKILFLSIIMI-SMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYII 89
            ++L  ++  +  M +   A+   +S V+DV   Q+  G  QD+  YPASLTKMMTLY+ 
Sbjct: 7   SRLLATALSSVFLMGAFTLAQAGQASFVVDVQSGQVLEGSNQDDLNYPASLTKMMTLYLA 66

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           FE L   +L+ + ++ +S+ A ++ P KL +      T  + +  ++  SAND + A  E
Sbjct: 67  FEALHDGRLNWDQKLTMSENAESKEPFKLAVGAGRKVTLREAVEGIVVLSANDAAVAIAE 126

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            + GSE+ FA  M++KA ++GM++T++KN SGL D  Q+TTARD A LG+ L ++FP+ +
Sbjct: 127 QLGGSEQVFAKAMTDKAHQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRDFPEEF 186

Query: 210 KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           K FS+R F++R   +  HN L+ +   +DGIKTGYT  SG+N+VTS       +V VVMG
Sbjct: 187 KLFSMRGFQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKDGRRVVGVVMG 246

Query: 270 MPTSQERDQKALELITSFLE 289
             T+  RD K   L+ S L+
Sbjct: 247 EKTASIRDDKMASLLDSTLQ 266


>gi|295096612|emb|CBK85702.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 403

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 146/306 (47%), Gaps = 22/306 (7%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADARRDPASLTKMMTSYVIGQAMKAGKFK 93

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A        +  S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 94  ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++N+ ++   GL  + Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVSALGLKNSHFQTVHGLDAEGQYSSARDMALIGQALIRDVPNEYSIYK 213

Query: 214 IRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +     TN N LL     N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 214 EKEFTFNGIRQTNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 273

Query: 273 SQERDQKALELITS---FLEK-KTLKHQQ-------THRKDNLSSTSLKKSLMIKKLKRT 321
            + R+ ++ +L+T    F E    LK  +           ++ +S  + K L +   +  
Sbjct: 274 FKGRETESKKLLTWGFRFFETVNPLKAGKEFASEPVWFGDNDRASLGVDKDLYLTIPRGR 333

Query: 322 YSQFKK 327
               K 
Sbjct: 334 MKDLKA 339


>gi|27376431|ref|NP_767960.1| penicillin-binding protein [Bradyrhizobium japonicum USDA 110]
 gi|27349571|dbj|BAC46585.1| bll1320 [Bradyrhizobium japonicum USDA 110]
          Length = 487

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 144/278 (51%), Gaps = 8/278 (2%)

Query: 57  IVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           ++I+ +  ++        P YPAS+TK+MT Y+  + ++  +L L+T + VS TAA+Q+P
Sbjct: 37  LLIEADSGKVLQADNATIPWYPASVTKIMTAYVTLKAVKDGRLTLDTLLTVSPTAASQSP 96

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           SK+  +  T  T +  +  ++ +SAND++    E + GS   F+++M++ AKK+GM  T 
Sbjct: 97  SKMGFRPGTQLTVDNALKMMMVKSANDMAVVLAEGVGGSIDGFSVMMNDTAKKLGMTQTS 156

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           Y N +GL    QIT+ARD  IL     ++ P+Y  +  I   R+  R+  N NKL+ +  
Sbjct: 157 YVNPNGLPADGQITSARDLGILARSFLRDLPEYEYFVHIPAIRFGKRVTGNFNKLIGRYP 216

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKH 295
             DG KTG+   SG+N+V S       ++AVV+G  +   R  KA +L+     +  L  
Sbjct: 217 GADGFKTGFICASGYNLVASATRNGRRLIAVVLGANSGTARAVKAAQLLERGFSQDNLSW 276

Query: 296 --QQTHRKDNL-----SSTSLKKSLMIKKLKRTYSQFK 326
                   +NL     S  +L+  +     KR  S   
Sbjct: 277 LRPSLGTVENLVPVDASPPNLRDDMCGGHRKRPASDDD 314


>gi|193063321|ref|ZP_03044411.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22]
 gi|192930905|gb|EDV83509.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22]
          Length = 403

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 135/287 (47%), Gaps = 19/287 (6%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNKNQMTGF 69
           +I+  R ++ +     L    IS A             +      S I+ID N  ++   
Sbjct: 3   TIFSARIMKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAE 62

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKE 122
           +  D  R PASLTKMMT Y+I + +++ K      + +   A        +  S ++LK 
Sbjct: 63  QNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKP 122

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
                  Q I  +  +S ND   A  +F +GS+  F  LM++    +G++NT ++   GL
Sbjct: 123 GMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGL 182

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIK 241
               Q ++ARD A++G  L ++ P  Y  +  ++F +      N N LL     N+DGIK
Sbjct: 183 DADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIK 242

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           TG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T   
Sbjct: 243 TGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGF 289


>gi|73539986|ref|YP_294506.1| penicillin-binding protein 6 [Ralstonia eutropha JMP134]
 gi|72117399|gb|AAZ59662.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Ralstonia eutropha JMP134]
          Length = 399

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 80/277 (28%), Positives = 148/277 (53%), Gaps = 13/277 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
            +      S ++ DV   Q    +  D+   PASLTK+MT Y+ FE L+ K+L L+  + 
Sbjct: 37  PMPQVAAKSWMLFDVTSGQALASQNADQRIEPASLTKLMTAYLAFEALKEKRLTLDQAVV 96

Query: 106 VSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            +        + S+++++     + +  ++ LI +S ND + A  E + GSE+ F  +M+
Sbjct: 97  PTTLVLKVKSDESRMFIEPNKPVSVQDLLMGLIVQSGNDAALALAEAVGGSEEGFVAMMN 156

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI 223
            +A+++GM+NT + N  G+ D N  TTA D A L   L ++FP+YY  +S ++F Y    
Sbjct: 157 REAQRMGMKNTHFTNTDGIPDPNHYTTAVDLATLTTRLIQDFPEYYGMYSQKEFTYNKIK 216

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMPTSQER 276
             N N+LL     +DG+KTG+T+++G+ +++S +            +++VV+G  T Q R
Sbjct: 217 QPNRNRLLYIDPTVDGVKTGHTKSAGYCLISSAKRPLANVPNGSRRLISVVIGTTTEQVR 276

Query: 277 DQKALELITSFLE-KKTLKHQQTHRKDNLSSTSLKKS 312
            Q++L+++    +   TL+     +   L++  + K 
Sbjct: 277 TQESLKILNYGFQFFDTLRLYD--KGQVLATPDIYKG 311


>gi|294671129|ref|ZP_06735984.1| hypothetical protein NEIELOOT_02837 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307237|gb|EFE48480.1| hypothetical protein NEIELOOT_02837 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 430

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 81/249 (32%), Positives = 137/249 (55%), Gaps = 1/249 (0%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  AS        + +V D+   Q+   K  D+   PASLTK+MT Y+ F+ L+  +L  
Sbjct: 68  VPQASTAPEIAAAAYLVQDLQSGQILTGKNLDKQIEPASLTKLMTAYLAFKALEEGRLKA 127

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
            T +  S+TA     S+++L           +  LI +S ND +    E + GSE  FA 
Sbjct: 128 ETMLTPSETAWRAEGSRMFLNAGKPVAVGDLLKGLIVQSGNDAAVTLAEALGGSEVGFAD 187

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
           +M+ +AK++GM  T + NA+GL     ++T RD AIL   + K++P+YY  +S++ F+Y 
Sbjct: 188 MMNAEAKRLGMSKTHFVNATGLPSDGHMSTVRDLAILSAAIIKDYPKYYPIYSMQSFKYN 247

Query: 221 NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           N    N N LL +  N+DG+KTG+T  +G+N++ S +     +V+VV+G  + + R  ++
Sbjct: 248 NIEQPNRNLLLYRDPNVDGLKTGHTNTAGYNLIASSKRNGRRVVSVVVGTESIEARAGES 307

Query: 281 LELITSFLE 289
            +L+   L+
Sbjct: 308 SKLLNWALQ 316


>gi|121592706|ref|YP_984602.1| penicillin-binding protein 6 [Acidovorax sp. JS42]
 gi|120604786|gb|ABM40526.1| penicillin-binding protein 6 [Acidovorax sp. JS42]
          Length = 387

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 80/269 (29%), Positives = 141/269 (52%), Gaps = 9/269 (3%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLY 87
            L    L    I+ +   +       + +++DV   Q+   K  D P   ASLTK+MT Y
Sbjct: 10  TLACAALMAPAILWAQVPQPPEIAARNYMLVDVTAGQVLATKDIDAPVEQASLTKLMTGY 69

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           ++F+ L++KK+ L  ++PVS+ A     S++++  K     +  +  +I +S ND + A 
Sbjct: 70  LVFDALRAKKITLEQRLPVSERAWKMPGSRMFIDPKMQVPVDDLLKGMIVQSGNDATVAL 129

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E + G+ + F  LM+ +AK +GM NT YKN  GL +    TTARD A L   L ++FP+
Sbjct: 130 AEGVGGTVENFVRLMNEQAKALGMTNTAYKNPEGLTEPGHTTTARDLATLATRLMQDFPE 189

Query: 208 YYKYFSIRKFRYRNRI---ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-----K 259
           Y  Y+S +++RY         N N LL +  ++DG+KTG+T  +G+ +V + +       
Sbjct: 190 YMHYYSTKQYRYEGTPASNSNNRNMLLFRDPSVDGLKTGHTAAAGYCLVATSKREFPNVG 249

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFL 288
              ++++V+G  +   R  ++ +L+    
Sbjct: 250 QRRLLSIVLGAASENARANESQKLLNWGY 278


>gi|170021011|ref|YP_001725965.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           ATCC 8739]
 gi|193069040|ref|ZP_03049998.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019]
 gi|256023756|ref|ZP_05437621.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia sp.
           4_1_40B]
 gi|300951129|ref|ZP_07164994.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           116-1]
 gi|300959200|ref|ZP_07171279.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           175-1]
 gi|301028891|ref|ZP_07192063.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           196-1]
 gi|307137249|ref|ZP_07496605.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           H736]
 gi|331641134|ref|ZP_08342269.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H736]
 gi|1778549|gb|AAB40832.1| penicillin-binding protein 5 [Escherichia coli]
 gi|169755939|gb|ACA78638.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli ATCC
           8739]
 gi|192957584|gb|EDV88029.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019]
 gi|260450201|gb|ACX40623.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli DH1]
 gi|299878139|gb|EFI86350.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           196-1]
 gi|300314185|gb|EFJ63969.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           175-1]
 gi|300449584|gb|EFK13204.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           116-1]
 gi|323938394|gb|EGB34648.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1520]
 gi|323943047|gb|EGB39206.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E482]
 gi|323972087|gb|EGB67301.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TA007]
 gi|331037932|gb|EGI10152.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H736]
          Length = 427

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 136/293 (46%), Gaps = 19/293 (6%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNK 63
           +     +I+  R ++ +     L    IS A             +      S I+ID N 
Sbjct: 21  VVQTMNTIFSARIMKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNS 80

Query: 64  NQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPS 116
            ++   +  D  R PASLTKMMT Y+I + +++ K      + +   A        +  S
Sbjct: 81  GKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSS 140

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
            ++LK        Q I  +  +S ND   A  +F +GS+  F  LM++    +G++NT +
Sbjct: 141 LMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHF 200

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH- 235
           +   GL    Q ++ARD A++G  L ++ P  Y  +  ++F +      N N LL     
Sbjct: 201 QTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSL 260

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           N+DGIKTG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T   
Sbjct: 261 NVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGF 313


>gi|301643955|ref|ZP_07243981.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           146-1]
 gi|301077690|gb|EFK92496.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           146-1]
          Length = 427

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 136/293 (46%), Gaps = 19/293 (6%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNK 63
           +     +I+  R ++ +     L    IS A             +      S I+ID N 
Sbjct: 21  VVQTMNTIFSARIMKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNS 80

Query: 64  NQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPS 116
            ++   +  D  R PASLTKMMT Y+I + +++ K      + +   A        +  S
Sbjct: 81  GKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSS 140

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
            ++LK        Q I  +  +S ND   A  +F +GS+  F  LM++    +G++NT +
Sbjct: 141 LMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHF 200

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH- 235
           +   GL    Q ++ARD A++G  L ++ P  Y  +  ++F +      N N LL     
Sbjct: 201 QTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSL 260

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           N+DGIKTG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T   
Sbjct: 261 NVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGF 313


>gi|328471030|gb|EGF41941.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus 10329]
          Length = 389

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 75/258 (29%), Positives = 136/258 (52%), Gaps = 8/258 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
           F +  ++  A EL ++     +++D +  ++   +  + R  PASLTK+MT Y+  + + 
Sbjct: 23  FAAPTVVPNAPELSSR---GYVLMDYHTGKVLVERDADKRLNPASLTKLMTAYVAGQEVN 79

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
           +  + L+ Q+ +S+ A  +N    SK++++  T  +       L+ +S ND S A  E +
Sbjct: 80  AGNISLDDQVVISRNAWAKNFPDSSKMFIEVNTSVSLSDLYRGLVVQSGNDASVAIAEHV 139

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  F  LM++ A ++G+ N+ + N  GL      +T  D A LG  + ++ P  Y  
Sbjct: 140 AGSEAGFVSLMNSWASQLGLTNSSFTNPHGLDSDGLYSTPHDIAKLGQAIIRDLPDIYPM 199

Query: 212 FSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +S   F Y      N N LL  +  N+DG+KTGYT  +G+++ TS    D  ++AVVMG 
Sbjct: 200 YSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYSLATSATNGDMRLIAVVMGA 259

Query: 271 PTSQERDQKALELITSFL 288
            +   R+ ++ +L++   
Sbjct: 260 KSQSVRESESKQLLSYGF 277


>gi|114570005|ref|YP_756685.1| Serine-type D-Ala-D-Ala carboxypeptidase [Maricaulis maris MCS10]
 gi|114340467|gb|ABI65747.1| Serine-type D-Ala-D-Ala carboxypeptidase [Maricaulis maris MCS10]
          Length = 381

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 73/275 (26%), Positives = 135/275 (49%), Gaps = 6/275 (2%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
           R    +  +L   I    +A   +      ++++D    ++   +  DE   PAS++KMM
Sbjct: 2   RVYPAIALLLSFVICTPGLAQTTYQTDASHAVILDAETGEVLFSRNADEAMPPASMSKMM 61

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRS 139
           T+ ++ E +++  L L+ ++PVS+ A          S ++L+  +    +  +  +I +S
Sbjct: 62  TVLMLIEAIEAGSLSLDDELPVSEYAWRTGGAASGSSTMFLEVNSRARVDDLLRGIIIQS 121

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND      E I GSE  FA +M+++A ++G+ +  + N++G    +   +A D A L  
Sbjct: 122 GNDACIVVAEAIGGSEAAFADMMTDRAHELGLTSASFANSTGWPHPDHRISALDLARLAR 181

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           +L ++ P YY  +S R+F Y      N N LL      DG+KTG+T  SG+ +V S    
Sbjct: 182 ILIEDHPDYYDIWSEREFTYNGIRQYNRNPLLGVFSGADGLKTGHTEESGYGLVGSAERD 241

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
            +  + V  GM ++ +R  +A  ++ S L   +L 
Sbjct: 242 GERRIIVFNGMSSNNDRATEAERMMRSALSDYSLY 276


>gi|15800346|ref|NP_286358.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O157:H7 EDL933]
 gi|16128615|ref|NP_415165.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli str. K-12 substr. MG1655]
 gi|26246612|ref|NP_752652.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           CFT073]
 gi|74311168|ref|YP_309587.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella sonnei
           Ss046]
 gi|82775901|ref|YP_402248.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella
           dysenteriae Sd197]
 gi|89107501|ref|AP_001281.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K-12
           substr. W3110]
 gi|91209679|ref|YP_539665.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           UTI89]
 gi|110640861|ref|YP_668589.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           536]
 gi|117622848|ref|YP_851761.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           APEC O1]
 gi|157159257|ref|YP_001461799.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           E24377A]
 gi|168770236|ref|ZP_02795243.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4486]
 gi|168778083|ref|ZP_02803090.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4196]
 gi|168779124|ref|ZP_02804131.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4076]
 gi|168786481|ref|ZP_02811488.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC869]
 gi|170080211|ref|YP_001729531.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli str. K-12 substr. DH10B]
 gi|170080312|ref|YP_001729632.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli str. K-12 substr. DH10B]
 gi|170683720|ref|YP_001742748.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           SMS-3-5]
 gi|188495416|ref|ZP_03002686.1| penicillin-binding protein 5 [Escherichia coli 53638]
 gi|191167358|ref|ZP_03029174.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A]
 gi|191172298|ref|ZP_03033840.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11]
 gi|194437465|ref|ZP_03069562.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1]
 gi|208808249|ref|ZP_03250586.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4206]
 gi|208815700|ref|ZP_03256879.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4045]
 gi|208823277|ref|ZP_03263595.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4042]
 gi|209398518|ref|YP_002269267.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4115]
 gi|209917890|ref|YP_002291974.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           SE11]
 gi|215485672|ref|YP_002328103.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217326125|ref|ZP_03442209.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. TW14588]
 gi|218553174|ref|YP_002386087.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           IAI1]
 gi|218557570|ref|YP_002390483.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           S88]
 gi|218688455|ref|YP_002396667.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           ED1a]
 gi|218694072|ref|YP_002401739.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           55989]
 gi|218699004|ref|YP_002406633.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           IAI39]
 gi|218703966|ref|YP_002411485.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           UMN026]
 gi|227884389|ref|ZP_04002194.1| serine family D-Ala-D-Ala carboxypeptidase [Escherichia coli 83972]
 gi|237707395|ref|ZP_04537876.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia sp.
           3_2_53FAA]
 gi|238899909|ref|YP_002925705.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli BW2952]
 gi|253774382|ref|YP_003037213.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160714|ref|YP_003043822.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli B
           str. REL606]
 gi|254791798|ref|YP_003076635.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O157:H7 str. TW14359]
 gi|256020584|ref|ZP_05434449.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella sp. D9]
 gi|260842858|ref|YP_003220636.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O103:H2 str.
           12009]
 gi|260853884|ref|YP_003227775.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O26:H11 str.
           11368]
 gi|260866780|ref|YP_003233182.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O111:H- str.
           11128]
 gi|261224099|ref|ZP_05938380.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261257793|ref|ZP_05950326.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291281583|ref|YP_003498401.1| D-alanyl-D-alanine carboxypeptidase dacA precursor [Escherichia
           coli O55:H7 str. CB9615]
 gi|293403894|ref|ZP_06647888.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           FVEC1412]
 gi|293408757|ref|ZP_06652596.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293413928|ref|ZP_06656577.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           B185]
 gi|293418743|ref|ZP_06661178.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           B088]
 gi|297519791|ref|ZP_06938177.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           OP50]
 gi|298379670|ref|ZP_06989275.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           FVEC1302]
 gi|300817851|ref|ZP_07098065.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           107-1]
 gi|300823054|ref|ZP_07103188.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           119-7]
 gi|300901139|ref|ZP_07119246.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           198-1]
 gi|300907806|ref|ZP_07125423.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1]
 gi|300920556|ref|ZP_07136981.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           115-1]
 gi|300927270|ref|ZP_07142998.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           182-1]
 gi|300931564|ref|ZP_07146878.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           187-1]
 gi|300937897|ref|ZP_07152688.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1]
 gi|300990039|ref|ZP_07179081.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1]
 gi|300996738|ref|ZP_07181525.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           200-1]
 gi|301025238|ref|ZP_07188805.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1]
 gi|301049826|ref|ZP_07196766.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           185-1]
 gi|301302111|ref|ZP_07208244.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           124-1]
 gi|301329153|ref|ZP_07222150.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1]
 gi|306812936|ref|ZP_07447129.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           NC101]
 gi|307312652|ref|ZP_07592284.1| Beta-lactamase [Escherichia coli W]
 gi|309785937|ref|ZP_07680566.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae
           1617]
 gi|309795501|ref|ZP_07689918.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           145-7]
 gi|312965077|ref|ZP_07779314.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 2362-75]
 gi|312970712|ref|ZP_07784893.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1827-70]
 gi|331645789|ref|ZP_08346892.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli M605]
 gi|331651643|ref|ZP_08352662.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli M718]
 gi|331656658|ref|ZP_08357620.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA206]
 gi|331676290|ref|ZP_08377002.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H591]
 gi|331682055|ref|ZP_08382679.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H299]
 gi|332281770|ref|ZP_08394183.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella sp. D9]
 gi|83288470|sp|P0AEB4|DACA_ECO57 RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA;
           Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
           Full=Penicillin-binding protein 5; Short=PBP-5; Flags:
           Precursor
 gi|83288471|sp|P0AEB3|DACA_ECOL6 RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA;
           Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
           Full=Penicillin-binding protein 5; Short=PBP-5; Flags:
           Precursor
 gi|83288472|sp|P0AEB2|DACA_ECOLI RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA;
           Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
           Full=Beta-lactamase; AltName: Full=Penicillin-binding
           protein 5; Short=PBP-5; Flags: Precursor
 gi|12513533|gb|AAG54966.1|AE005242_10 D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding
           protein 5 [Escherichia coli O157:H7 str. EDL933]
 gi|26107011|gb|AAN79195.1|AE016757_99 Penicillin-binding protein 5 precursor [Escherichia coli CFT073]
 gi|41212|emb|CAA29774.1| unnamed protein product [Escherichia coli K-12]
 gi|1651259|dbj|BAA35275.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K12
           substr. W3110]
 gi|1786851|gb|AAC73733.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli str. K-12 substr. MG1655]
 gi|73854645|gb|AAZ87352.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella sonnei
           Ss046]
 gi|81240049|gb|ABB60759.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Shigella
           dysenteriae Sd197]
 gi|91071253|gb|ABE06134.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding
           protein 5 [Escherichia coli UTI89]
 gi|110342453|gb|ABG68690.1| D-alanyl-D-alanine carboxypeptidas, penicillin-binding protein 5
           [Escherichia coli 536]
 gi|115511972|gb|ABJ00047.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding
           protein 5 [Escherichia coli APEC O1]
 gi|157081287|gb|ABV20995.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E24377A]
 gi|169888046|gb|ACB01753.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli str. K-12 substr. DH10B]
 gi|169888147|gb|ACB01854.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli str. K-12 substr. DH10B]
 gi|170521438|gb|ACB19616.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli SMS-3-5]
 gi|187766838|gb|EDU30682.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4196]
 gi|188490615|gb|EDU65718.1| penicillin-binding protein 5 [Escherichia coli 53638]
 gi|189002783|gb|EDU71769.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4076]
 gi|189360912|gb|EDU79331.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4486]
 gi|189373492|gb|EDU91908.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC869]
 gi|190902607|gb|EDV62340.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A]
 gi|190907397|gb|EDV66994.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11]
 gi|194423634|gb|EDX39624.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1]
 gi|208728050|gb|EDZ77651.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4206]
 gi|208732348|gb|EDZ81036.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4045]
 gi|208737470|gb|EDZ85154.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4042]
 gi|209159918|gb|ACI37351.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. EC4115]
 gi|209777148|gb|ACI86886.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli]
 gi|209777150|gb|ACI86887.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli]
 gi|209777152|gb|ACI86888.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli]
 gi|209777154|gb|ACI86889.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli]
 gi|209777156|gb|ACI86890.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli]
 gi|209911149|dbj|BAG76223.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli SE11]
 gi|215263744|emb|CAS08080.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli O127:H6 str. E2348/69]
 gi|217322346|gb|EEC30770.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
           str. TW14588]
 gi|218350804|emb|CAU96496.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli 55989]
 gi|218359942|emb|CAQ97485.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli IAI1]
 gi|218364339|emb|CAR02013.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli S88]
 gi|218368990|emb|CAR16744.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli IAI39]
 gi|218426019|emb|CAR06836.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli ED1a]
 gi|218431063|emb|CAR11939.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli UMN026]
 gi|222032392|emb|CAP75131.1| Penicillin-binding protein 5 [Escherichia coli LF82]
 gi|226898605|gb|EEH84864.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia sp.
           3_2_53FAA]
 gi|227838475|gb|EEJ48941.1| serine family D-Ala-D-Ala carboxypeptidase [Escherichia coli 83972]
 gi|238860729|gb|ACR62727.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli BW2952]
 gi|242376408|emb|CAQ31107.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding
           protein 5 [Escherichia coli BL21(DE3)]
 gi|253325426|gb|ACT30028.1| Beta-lactamase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972615|gb|ACT38286.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli B str. REL606]
 gi|253976809|gb|ACT42479.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli BL21(DE3)]
 gi|254591198|gb|ACT70559.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli O157:H7 str. TW14359]
 gi|257752533|dbj|BAI24035.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O26:H11 str.
           11368]
 gi|257758005|dbj|BAI29502.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O103:H2 str.
           12009]
 gi|257763136|dbj|BAI34631.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O111:H- str.
           11128]
 gi|281177781|dbj|BAI54111.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli SE15]
 gi|284920432|emb|CBG33493.1| penicillin-binding protein 5 (D-alanyl-D-alanine carboxypeptidase)
           [Escherichia coli 042]
 gi|290761456|gb|ADD55417.1| D-alanyl-D-alanine carboxypeptidase dacA precursor [Escherichia
           coli O55:H7 str. CB9615]
 gi|291325271|gb|EFE64686.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           B088]
 gi|291428480|gb|EFF01505.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           FVEC1412]
 gi|291433986|gb|EFF06959.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           B185]
 gi|291471935|gb|EFF14418.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294492617|gb|ADE91373.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli IHE3034]
 gi|298279368|gb|EFI20876.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
           FVEC1302]
 gi|300298421|gb|EFJ54806.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           185-1]
 gi|300304453|gb|EFJ58973.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           200-1]
 gi|300355406|gb|EFJ71276.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           198-1]
 gi|300396141|gb|EFJ79679.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1]
 gi|300400495|gb|EFJ84033.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1]
 gi|300407211|gb|EFJ90749.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1]
 gi|300412458|gb|EFJ95768.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           115-1]
 gi|300416758|gb|EFK00069.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           182-1]
 gi|300457097|gb|EFK20590.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1]
 gi|300460633|gb|EFK24126.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           187-1]
 gi|300524403|gb|EFK45472.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           119-7]
 gi|300529548|gb|EFK50610.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           107-1]
 gi|300842663|gb|EFK70423.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           124-1]
 gi|300844500|gb|EFK72260.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1]
 gi|305853699|gb|EFM54138.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           NC101]
 gi|306907354|gb|EFN37859.1| Beta-lactamase [Escherichia coli W]
 gi|307552502|gb|ADN45277.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli ABU 83972]
 gi|307627930|gb|ADN72234.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           UM146]
 gi|308120876|gb|EFO58138.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           145-7]
 gi|308926048|gb|EFP71526.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae
           1617]
 gi|309700870|emb|CBJ00167.1| penicillin-binding protein 5 (D-alanyl-D-alanine carboxypeptidase)
           [Escherichia coli ETEC H10407]
 gi|310337361|gb|EFQ02499.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1827-70]
 gi|312290168|gb|EFR18051.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 2362-75]
 gi|312945179|gb|ADR26006.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315059887|gb|ADT74214.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Escherichia coli W]
 gi|315135298|dbj|BAJ42457.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           DH1]
 gi|315255065|gb|EFU35033.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 85-1]
 gi|315287076|gb|EFU46490.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           110-3]
 gi|315292098|gb|EFU51450.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           153-1]
 gi|315299178|gb|EFU58432.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 16-3]
 gi|320178421|gb|EFW53389.1| D-alanyl-D-alanine carboxypeptidase [Shigella boydii ATCC 9905]
 gi|320193039|gb|EFW67679.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320194186|gb|EFW68818.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli WV_060327]
 gi|320198242|gb|EFW72846.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli EC4100B]
 gi|320638081|gb|EFX07845.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O157:H7 str. G5101]
 gi|320643487|gb|EFX12657.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O157:H- str. 493-89]
 gi|320648822|gb|EFX17449.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O157:H- str. H 2687]
 gi|320654408|gb|EFX22455.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320660089|gb|EFX27619.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320664886|gb|EFX32021.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323153647|gb|EFZ39895.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli EPECa14]
 gi|323158915|gb|EFZ44926.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli E128010]
 gi|323179892|gb|EFZ65449.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1180]
 gi|323185014|gb|EFZ70381.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1357]
 gi|323191270|gb|EFZ76534.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli RN587/1]
 gi|323379549|gb|ADX51817.1| Beta-lactamase [Escherichia coli KO11]
 gi|323945107|gb|EGB41169.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H120]
 gi|323952790|gb|EGB48658.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H252]
 gi|323958390|gb|EGB54096.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H263]
 gi|323963201|gb|EGB58769.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H489]
 gi|323967579|gb|EGB62995.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli M863]
 gi|323976385|gb|EGB71475.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TW10509]
 gi|324006310|gb|EGB75529.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 57-2]
 gi|324010472|gb|EGB79691.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 60-1]
 gi|324016087|gb|EGB85306.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           117-3]
 gi|324116706|gb|EGC10621.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1167]
 gi|326341383|gb|EGD65175.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           1044]
 gi|326345839|gb|EGD69578.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
           1125]
 gi|327254316|gb|EGE65938.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli STEC_7v]
 gi|330910393|gb|EGH38903.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli AA86]
 gi|331044541|gb|EGI16668.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli M605]
 gi|331049921|gb|EGI21979.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli M718]
 gi|331054906|gb|EGI26915.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA206]
 gi|331076348|gb|EGI47630.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H591]
 gi|331080734|gb|EGI51908.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H299]
 gi|332096835|gb|EGJ01825.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae
           155-74]
 gi|332104122|gb|EGJ07468.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella sp. D9]
 gi|332341978|gb|AEE55312.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli UMNK88]
          Length = 403

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 135/287 (47%), Gaps = 19/287 (6%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNKNQMTGF 69
           +I+  R ++ +     L    IS A             +      S I+ID N  ++   
Sbjct: 3   TIFSARIMKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAE 62

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKE 122
           +  D  R PASLTKMMT Y+I + +++ K      + +   A        +  S ++LK 
Sbjct: 63  QNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKP 122

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
                  Q I  +  +S ND   A  +F +GS+  F  LM++    +G++NT ++   GL
Sbjct: 123 GMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGL 182

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIK 241
               Q ++ARD A++G  L ++ P  Y  +  ++F +      N N LL     N+DGIK
Sbjct: 183 DADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIK 242

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           TG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T   
Sbjct: 243 TGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGF 289


>gi|323170759|gb|EFZ56409.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli LT-68]
          Length = 403

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 80/287 (27%), Positives = 135/287 (47%), Gaps = 19/287 (6%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNKNQMTGF 69
           +I+  R ++ +     L    IS A             +      S I+ID N  ++   
Sbjct: 3   TIFSARIMKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAE 62

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKE 122
           +  D  R PASLTKMMT Y+I + +++ K      + +   A        +  S ++LK 
Sbjct: 63  QNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKP 122

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
                  Q I  +  +S ND   A  +F +GS+  F  LM++    +G++NT ++   GL
Sbjct: 123 GMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGL 182

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIK 241
               Q ++ARD A++G  L +N P  Y  +  ++F +      N N LL     N+DGIK
Sbjct: 183 DADGQYSSARDMALIGQALIRNVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIK 242

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           TG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T   
Sbjct: 243 TGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGF 289


>gi|296103402|ref|YP_003613548.1| D-alanyl-D-alanine carboxypeptidase fraction A [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295057861|gb|ADF62599.1| D-alanyl-D-alanine carboxypeptidase fraction A [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 403

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 146/306 (47%), Gaps = 22/306 (7%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADARRDPASLTKMMTSYVIGQAMKAGKFK 93

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A        +  S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 94  ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++N+ ++   GL  + Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVSALGLKNSHFQTVHGLDAEGQYSSARDMALIGQALIRDVPNEYAIYK 213

Query: 214 IRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +     TN N LL     N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 214 EKEFTFNGIRQTNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 273

Query: 273 SQERDQKALELITS---FLEK-KTLKHQQ-------THRKDNLSSTSLKKSLMIKKLKRT 321
            + R+ ++ +L+T    F E    LK  +           ++ +S  + K L +   +  
Sbjct: 274 FKGRETESKKLLTWGFRFFETVNPLKAGKEFASEPVWFGDNDRASLGVDKDLYLTIPRGR 333

Query: 322 YSQFKK 327
               K 
Sbjct: 334 MKDLKA 339


>gi|291541617|emb|CBL14727.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus bromii L2-63]
          Length = 382

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 89/314 (28%), Positives = 155/314 (49%), Gaps = 6/314 (1%)

Query: 27  NIQLMGKILFLSIIMISM-ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMM 84
           +I L    L L  + + + A    +    S+++++ +  ++   K    + P AS+TK+M
Sbjct: 8   SITLCAVFLLLPFVGLKVNALSADSISAPSAVLMESSTGKVLFEKNPHEQRPCASVTKIM 67

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TL ++FE + S KL L+ +I  S+ AA    S ++L++    + +  I A +  SAND +
Sbjct: 68  TLLLVFEAVDSGKLSLDDEITASEHAAGMGGSDIWLEKGETMSADDMIKATVVVSANDAA 127

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  E ISG E  F   M+++AK++GM +T++KN +GL ++  IT+A D A++   L K 
Sbjct: 128 VALAEHISGGEDAFVEKMNSRAKELGMNDTVFKNCNGLDEEGHITSAYDVALMSRELTK- 186

Query: 205 FPQYYKYFSIR--KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
             + + Y SI     R     I N NKLL   + I G+KTG T ++G  +  +    D  
Sbjct: 187 HEKIFDYTSIWLDNLRGGKTQIVNTNKLLKTYNGITGLKTGTTNDAGCCMSATATRGDVS 246

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTY 322
           +++VV+G  T +ER   A  L+       ++K + T  +D   S  +   +         
Sbjct: 247 LISVVLGCKTGKERFADAAALLDYGFANVSVK-ELTLPEDMPKSIEVNGGMTDSVKLECK 305

Query: 323 SQFKKIDAKAHSTQ 336
              K +  K    +
Sbjct: 306 VSSKIVVDKGSGAK 319


>gi|260574206|ref|ZP_05842211.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sp. SW2]
 gi|259023672|gb|EEW26963.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sp. SW2]
          Length = 548

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 96/262 (36%), Positives = 142/262 (54%), Gaps = 2/262 (0%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLY 87
           Q +  +L  S +++           Y++IVID    +    K  D   +PASLTKM+TLY
Sbjct: 7   QFVRNLLLTSFVLVCAFVSPAGAAPYAAIVIDARTGETIYAKNADTRLHPASLTKMLTLY 66

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           I F  ++  ++ L+T + VSK AA++ PS+L L+          I A   +SAND +TA 
Sbjct: 67  ITFGAIERGEISLDTMVTVSKHAASEPPSRLGLRAGQKIALRYLIRAAAIKSANDAATAI 126

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
           GE + GSE KFA  M+  AK +GM+N+ ++NA+GL     ++TARD   LG  L  +FPQ
Sbjct: 127 GEAVGGSEAKFAERMNRTAKALGMRNSTFRNANGLTTPGHMSTARDMTTLGRHLFYDFPQ 186

Query: 208 YYKYFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           YY  FS R        + N N + L+     DGIKTGYT  +GFN+  S +  +  I+A 
Sbjct: 187 YYNIFSRRSSDAGVAEVANTNRRFLDMYEGADGIKTGYTAPAGFNLTASAQRGNKRIIAT 246

Query: 267 VMGMPTSQERDQKALELITSFL 288
           + G  ++  R+ K  EL+    
Sbjct: 247 IFGGTSTAMRNAKMAELLDLGF 268


>gi|110804719|ref|YP_688239.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella flexneri 5
           str. 8401]
 gi|110614267|gb|ABF02934.1| penicillin-binding protein 5 [Shigella flexneri 5 str. 8401]
          Length = 427

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 136/293 (46%), Gaps = 19/293 (6%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNK 63
           +     +I+  R ++ +     L    IS A             +      S I+ID N 
Sbjct: 21  VVQTMNTIFSARIMKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNS 80

Query: 64  NQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPS 116
            ++   +  D  R PASLTKMMT Y+I + +++ K      + +   A        +  S
Sbjct: 81  GKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSS 140

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
            ++LK        Q I  +  +S ND   A  +F +GS+  F  LM++    +G++NT +
Sbjct: 141 LMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHF 200

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH- 235
           +   GL    Q ++ARD A++G  L ++ P  Y  +  ++F +      N N LL     
Sbjct: 201 QTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSL 260

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           N+DGIKTG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T   
Sbjct: 261 NVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGF 313


>gi|170767905|ref|ZP_02902358.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii
           TW07627]
 gi|170123393|gb|EDS92324.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii
           TW07627]
          Length = 403

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 135/287 (47%), Gaps = 19/287 (6%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNKNQMTGF 69
           +I+  R ++ +     L    IS A             +      S I+ID N  ++   
Sbjct: 3   TIFSARIMKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAE 62

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKE 122
           +  D  R PASLTKMMT Y+I + +++ K      + +   A        +  S ++LK 
Sbjct: 63  QNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFRGSSLMFLKP 122

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
                  Q I  +  +S ND   A  +F +GS+  F  LM++    +G++NT ++   GL
Sbjct: 123 GMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGL 182

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIK 241
               Q ++ARD A++G  L ++ P  Y  +  ++F +      N N LL     N+DGIK
Sbjct: 183 DADGQYSSARDMALIGQALIRDVPNEYAIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIK 242

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           TG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T   
Sbjct: 243 TGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGRETESKKLLTWGF 289


>gi|331666984|ref|ZP_08367858.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA271]
 gi|331066208|gb|EGI38092.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA271]
          Length = 403

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 135/287 (47%), Gaps = 19/287 (6%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNKNQMTGF 69
           +I+  R ++ +     L    IS A             +      S I+ID N  ++   
Sbjct: 3   TIFSARIMKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAE 62

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKE 122
           +  D  R PASLTKMMT Y+I + +++ K      + +   A        +  S ++LK 
Sbjct: 63  QNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKP 122

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
                  Q I  +  +S ND   A  +F +GS+  F  LM++    +G++NT ++   GL
Sbjct: 123 GMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGL 182

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIK 241
               Q ++ARD A++G  L ++ P  Y  +  ++F +      N N LL     N+DGIK
Sbjct: 183 DADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIK 242

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           TG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T   
Sbjct: 243 TGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGF 289


>gi|222529548|ref|YP_002573430.1| serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456395|gb|ACM60657.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 386

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 80/284 (28%), Positives = 140/284 (49%), Gaps = 14/284 (4%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I++D +  ++   K   E   PAS+TK+MT+ +I E ++  K+ L+ ++  S+ A+
Sbjct: 41  AKSAILVDFDTGKILYEKNSHEKLPPASITKIMTMILICEAIEKGKIKLSDKVVASQNAS 100

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S++YLKE    T E+ + ++   SAND   A  E I+GS ++F  +M+ KAK++GM
Sbjct: 101 SLGGSQVYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYMMNKKAKELGM 160

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKN-FPQYYKYFSIRKFRYRNRIITNHNKL 230
            +T + N  GL  +N  T+A D AI+   L K+   + Y    +   R     +TN NKL
Sbjct: 161 FDTNFVNPYGLDAENHYTSAYDVAIMSRELLKHKIIRKYLTTWVDTIREGKFGLTNTNKL 220

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +       G+KTG T  + F +  S       ++AV+MG P S+ R   A +++      
Sbjct: 221 VRFYRGCTGVKTGSTDKAKFCVSASALRNGLHLIAVIMGAPDSKTRFNDATKVLDWGFAN 280

Query: 291 KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
            ++             +   K     K+K      K+++A   +
Sbjct: 281 FSMY------------SPYSKGYCFGKVKVKNGIEKEVEAILST 312


>gi|239817881|ref|YP_002946791.1| beta-lactamase [Variovorax paradoxus S110]
 gi|239804458|gb|ACS21525.1| Beta-lactamase [Variovorax paradoxus S110]
          Length = 389

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 89/264 (33%), Positives = 150/264 (56%), Gaps = 14/264 (5%)

Query: 38  SIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
           S+ MI+ A+++ A P+ ++   +++DV  NQ+   K  D P  PASLTK+M+ YI+F+ L
Sbjct: 18  SVGMIA-AAQVPAPPEIAARSYLLLDVTANQILAQKDIDSPVEPASLTKLMSAYIVFDAL 76

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           ++KK+ L   +PVS+ A     S++++  K     E  I  LI +S ND + A  E + G
Sbjct: 77  RAKKITLTQTMPVSQRAWKMPGSRMFIDPKMQVPVEDLIKGLIVQSGNDATVALAEGVGG 136

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           + + F  LM+ +AK +GM+NT YKN  GL      TTARD +IL   L ++FP+  KY++
Sbjct: 137 TVEHFVELMNAQAKALGMKNTSYKNPEGLTAPGHTTTARDLSILATRLVRDFPEEAKYYA 196

Query: 214 IRKFRYRNRII---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK------DDPIV 264
           I+K+RY        TN N LL +   +DG+KTG+T  +G+ ++ + +           ++
Sbjct: 197 IKKYRYPGTPSTNDTNRNLLLFRDPTVDGLKTGHTEAAGYCMIATAKRDFPNLTGGRRLL 256

Query: 265 AVVMGMPTSQERDQKALELITSFL 288
           ++V+G      R  ++ +L+    
Sbjct: 257 SIVLGTSGETVRANESQKLLNWGY 280


>gi|74316665|ref|YP_314405.1| serine-type D-ala-D-ala-carboxypeptidase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74056160|gb|AAZ96600.1| serine-type D-ala-D-ala-carboxypeptidase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 402

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 68/254 (26%), Positives = 126/254 (49%), Gaps = 5/254 (1%)

Query: 52  PKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
              S +++D     +    +  E   PASLTK+MT ++    LQ  ++  N  + +S+ A
Sbjct: 50  AAKSWVLMDAASGSVLVDHRGRERLPPASLTKLMTSHVAALELQRGRIKENDLVTISEKA 109

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                SK++++          +  +I +S ND S A  E ++G E  FA LM+ +AK++G
Sbjct: 110 WRMGGSKMFVRVGNQVAVHDLLRGIIVQSGNDASIALAEHLAGGEDTFAALMNQEAKRLG 169

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           + +T + NA+G   +   ++A D A L   +    P +Y  ++ ++F +      N N L
Sbjct: 170 LADTHFVNATGWPAEGHYSSALDMAKLARAIIIEDPAHYGLYAEKEFVWNGIKQPNRNLL 229

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI---TSF 287
           L +  ++DG+KTG+T  +G+ +V S +     ++A V G  +   R  +  +L+    +F
Sbjct: 230 LWRDPSVDGLKTGHTEEAGYCLVASSQRDGQRMIAAVFGTESEAARATETAKLLAYGFNF 289

Query: 288 LEKKT-LKHQQTHR 300
            + KT  K  Q  +
Sbjct: 290 FDSKTFFKKGQAVQ 303


>gi|303241570|ref|ZP_07328070.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio
           cellulolyticus CD2]
 gi|302590888|gb|EFL60636.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio
           cellulolyticus CD2]
          Length = 403

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 82/302 (27%), Positives = 157/302 (51%), Gaps = 7/302 (2%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSK 96
           SI+  +  SEL AK   +S+++D    Q+    + +E    AS+TK+M++ +  E + S 
Sbjct: 40  SIMASTSISELKAK---ASVLMDAYTGQVLYENKSNEKLPIASVTKVMSMLLAMEAIDSG 96

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           K+ L   +  S+ A+    S+ Y++    ++    + A+   S+NDV+ +  E ++GSE+
Sbjct: 97  KISLKDMVTASEYASGMGGSQAYIEPGEQYSVHDALKAIALHSSNDVTVSVAELVAGSEE 156

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F + M+ KA ++GM+NT++K+ +GL D+   ++A D A++   L    P+  +Y S+  
Sbjct: 157 AFVVQMNEKAGELGMKNTLFKDCTGLTDEGHFSSANDIALMSRELVTKHPKILEYSSVYT 216

Query: 217 FRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
             +RN    +TN N+L+      DG+KTG+TR +GF +  ++   +  +++VV+G P S 
Sbjct: 217 DTFRNGEFDLTNTNRLVKFYSGCDGLKTGFTRAAGFCLSATVSRNNMRLISVVLGEPDSN 276

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
            R  +  +L+               + + +S  S+KK L  K      +  K +  +   
Sbjct: 277 TRFAETRKLLDYGFANYET-ADVNKKGELVSEISVKKGLTSKAAGVIGNDVKILLPRGQK 335

Query: 335 TQ 336
           T+
Sbjct: 336 TK 337


>gi|94309170|ref|YP_582380.1| penicillin-binding protein 6 [Cupriavidus metallidurans CH34]
 gi|93353022|gb|ABF07111.1| D-alanyl-D-alanine carboxypeptidase [Cupriavidus metallidurans
           CH34]
          Length = 397

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 84/277 (30%), Positives = 150/277 (54%), Gaps = 13/277 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
            +      S ++ DV   Q    +  + R  PASLTK+MT Y+ FE L+ K+L L+  + 
Sbjct: 35  PVPQVAAKSWMLYDVTSGQALASQNADMRIEPASLTKLMTAYLAFEALKEKRLTLDQTVT 94

Query: 106 VSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            +        + S+++++     + +  +L LI +S ND S A  E + GSE+ F ++M+
Sbjct: 95  PTDIVRKVKSDESRMFIEAGKPVSVQDLLLGLIVQSGNDASLALAEAVGGSEEGFVVMMN 154

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI 223
            +A+++GM+NT + N  G+ D N  TTA D AIL   L K+FP+YY  +S ++F Y    
Sbjct: 155 REAQRMGMKNTHFTNTDGVPDPNHYTTAVDLAILTTRLIKDFPEYYSMYSQKEFTYNKIR 214

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMPTSQER 276
             N N+LL     +DG+KTG+T+++G+ +++S +            +V++V+G  T Q R
Sbjct: 215 QPNRNRLLYIDPTVDGVKTGHTKSAGYCLISSAKRPLANVPNGSRRLVSIVIGTATEQIR 274

Query: 277 DQKALELITSFLE-KKTLKHQQTHRKDNLSSTSLKKS 312
            Q++L+++    +   TL+     +   L++  + K 
Sbjct: 275 TQESLKILNYGFQFFDTLRLYD--KGQVLATPDIYKG 309


>gi|221640145|ref|YP_002526407.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
           KD131]
 gi|221160926|gb|ACM01906.1| Serine-type D-Ala-D-Ala carboxypeptidase precursor [Rhodobacter
           sphaeroides KD131]
          Length = 463

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 97/260 (37%), Positives = 142/260 (54%), Gaps = 3/260 (1%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEY 92
           +LF+ + M+  A    A P Y++IV+D    +       E R +PASLTKMMTLYI F+ 
Sbjct: 1   MLFVFVAMVMAAHSAVAAP-YAAIVMDARTGETLYETNSETRLHPASLTKMMTLYITFQA 59

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           +Q  ++ L++ + V+K AA + PSKL LK          I A   +SAND +TA  E + 
Sbjct: 60  IQRGEISLDSLVTVTKNAAAEPPSKLGLKSGQRIALRYLIRAAAVKSANDAATAICEAVG 119

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           GSE  FA  M+  AK IGM  T +KN +GL  +  ++TA D  +LG  L  +FPQYY  F
Sbjct: 120 GSEAAFAERMNRTAKAIGMTKTTFKNCNGLTAEGHLSTAHDMNVLGRRLFFDFPQYYNIF 179

Query: 213 SIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           S R+       + N N + L+     DGIKTGYT  +G+N+  S +  +  I+A V G  
Sbjct: 180 SRRRADAGVTTVANTNTRFLDAYKGADGIKTGYTSPAGYNLTASAQRGNKRIIATVFGGK 239

Query: 272 TSQERDQKALELITSFLEKK 291
           ++  R+ K  +L+     + 
Sbjct: 240 STAHRNAKMADLLDLGFREA 259


>gi|300717466|ref|YP_003742269.1| penicillin-binding protein 6B (D-alanyl-D-alanine carboxypeptidase)
           [Erwinia billingiae Eb661]
 gi|299063302|emb|CAX60422.1| Penicillin-binding protein 6B (D-alanyl-D-alanine carboxypeptidase)
           [Erwinia billingiae Eb661]
          Length = 379

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 77/309 (24%), Positives = 140/309 (45%), Gaps = 22/309 (7%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           ++      +    S +++D    Q+      DE R PASLTK+MT Y++   + +K++  
Sbjct: 16  LAFPMTPPSVDAASWVLMDATTGQVLTQGNADERRNPASLTKLMTGYVVDRAIDAKRITR 75

Query: 101 NTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
           +  + + + A        +  S ++LK     +       +I  S ND   A  ++++GS
Sbjct: 76  DDMVTIGQDAWGAGNPVFKGSSLMFLKPGEKVSVRDLSRGVIIDSGNDACVALADYVAGS 135

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           +  F   M+    K+G+ NT ++   GL    Q TTA D A L   +    P +Y+ +  
Sbjct: 136 QSAFVDQMNQYVTKLGLTNTHFETVHGLDAPGQFTTAGDLAKLSRAIISGEPDFYQMYGE 195

Query: 215 RKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           +   +      N N LL  K  ++DG+KTG+T ++GFNI+ S       ++AV+MG  ++
Sbjct: 196 KSLTWNGITQQNRNGLLWDKTLHVDGLKTGHTESAGFNIIASSVDGQRRLIAVIMGGKST 255

Query: 274 QERDQKALELITSFLEK----------KTLKHQQTHRKDN-LSSTSLKKSLMIKKLKRTY 322
           + R+++A +L+T               K + H+     +    S    K + +       
Sbjct: 256 KGREEQARKLLTWGQNNFDTVQLFHAGKEIGHENVWYGNPHQVSVGSDKDVYLA---LPR 312

Query: 323 SQFKKIDAK 331
            + KKI AK
Sbjct: 313 DEVKKIKAK 321


>gi|24112068|ref|NP_706578.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella flexneri
           2a str. 301]
 gi|30062179|ref|NP_836350.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella flexneri
           2a str. 2457T]
 gi|82543078|ref|YP_407025.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella boydii
           Sb227]
 gi|24050895|gb|AAN42285.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding
           protein 5 [Shigella flexneri 2a str. 301]
 gi|30040424|gb|AAP16156.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding
           protein 5 [Shigella flexneri 2a str. 2457T]
 gi|81244489|gb|ABB65197.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Shigella boydii
           Sb227]
 gi|313649723|gb|EFS14147.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri 2a str.
           2457T]
 gi|332760998|gb|EGJ91286.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri
           4343-70]
 gi|332763369|gb|EGJ93609.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-671]
 gi|332768266|gb|EGJ98451.1| penicillin-binding protein 6 [Shigella flexneri 2930-71]
 gi|333007457|gb|EGK26937.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri VA-6]
 gi|333007869|gb|EGK27345.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-218]
 gi|333010043|gb|EGK29478.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-272]
 gi|333020876|gb|EGK40136.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-227]
 gi|333021546|gb|EGK40796.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-304]
          Length = 403

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 135/287 (47%), Gaps = 19/287 (6%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNKNQMTGF 69
           +I+  R ++ +     L    IS A             +      S I+ID N  ++   
Sbjct: 3   TIFSARIMKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAE 62

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKE 122
           +  D  R PASLTKMMT Y+I + +++ K      + +   A        +  S ++LK 
Sbjct: 63  QNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKP 122

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
                  Q I  +  +S ND   A  +F +GS+  F  LM++    +G++NT ++   GL
Sbjct: 123 GMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGL 182

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIK 241
               Q ++ARD A++G  L ++ P  Y  +  ++F +      N N LL     N+DGIK
Sbjct: 183 DADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIK 242

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           TG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T   
Sbjct: 243 TGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGF 289


>gi|311030730|ref|ZP_07708820.1| D-alanyl-D-alanine carboxypeptidase [Bacillus sp. m3-13]
          Length = 387

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 86/327 (26%), Positives = 163/327 (49%), Gaps = 28/327 (8%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKY--------SSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           + +  I+ ++    + +  + A+ K         S+I+I+ +  Q+   K   E   PAS
Sbjct: 3   KFITAIIAIAFTFSAFSPVVGAEEKSVQLTENARSAILIERDTGQVLYEKNGHEKLPPAS 62

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MT+ +I E +   +L  + +I  S+ AA+   S+++L+     TT++ +  +   S
Sbjct: 63  MTKIMTMLLIMEAIDKGELTWDEKIRTSEYAASMGGSQIFLEPGEEMTTDEMLRGIAIAS 122

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND S A  E I+GSE  F   M+ KAK++G++NT+++N +GL  KN  +TA D A++  
Sbjct: 123 GNDASVAMAERIAGSEAAFVDRMNAKAKELGLENTLFQNPTGLPAKNHYSTANDMAVMAK 182

Query: 200 LLRKNFPQYYKYFSI-----RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
            L K F    KY        R+   +   + N NKL+     +DG+KTG+T+ + + +  
Sbjct: 183 ELLK-FEGITKYTGQYEDYLRQDSEKKFWLVNTNKLVRFYPGVDGVKTGFTQEAKYCLTA 241

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT-------------LKHQQTHRK 301
           + +  +  ++AVV G PT ++R+ +   ++     +               ++  +  +K
Sbjct: 242 TAKKDNMRVIAVVFGAPTPKDRNAQITNMLDFAFSQYKTHPMYERNVAVGRVEISKGSQK 301

Query: 302 DNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           +  + TS   S++ KK + T    K I
Sbjct: 302 EVDAVTSEPISVLTKKGENTDDVEKII 328


>gi|90411493|ref|ZP_01219504.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum 3TCK]
 gi|90327706|gb|EAS44049.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum 3TCK]
          Length = 400

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/283 (28%), Positives = 145/283 (51%), Gaps = 13/283 (4%)

Query: 11  KKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK 70
           K+ F     G+  +  ++ +  K+L    ++I     L+AK     +++D     +    
Sbjct: 2   KRFFGRIVLGAFSV--HMLIATKVL---AVVIPEPPALNAK---GYVLMDFQSGSIIAEN 53

Query: 71  QD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT---QNPSKLYLKEKTYF 126
              +   PASLTK+MT Y++ + + +K+L  +  + V + A +    + SK+++K     
Sbjct: 54  NPRDALAPASLTKLMTAYVVGQEINTKRLKWDDMVTVGENAWSLKFPDSSKMFIKPGDEI 113

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           + E  +  +I +S ND S A  E+I+GSE  F  LM+  AK + +Q+T + NA GL  + 
Sbjct: 114 SVENLMRGVIIQSGNDASVALAEYIAGSESGFVNLMNGWAKTLKLQDTRFINAHGLDGEG 173

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYT 245
             T+  D A L   + ++ P  Y  +  ++F + +    N NKLL  K  N+DG KTGYT
Sbjct: 174 IQTSPADMATLMRHIIRDVPDVYALYQDKQFAWNDITQFNRNKLLWDKALNVDGGKTGYT 233

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
             +G+++V+S       ++AVVMG P+   R + +  L++   
Sbjct: 234 EQAGYSLVSSATEGSRRLIAVVMGTPSQTIRAEASKNLLSYGF 276


>gi|320539093|ref|ZP_08038764.1| putative D-alanyl-D-alanine carboxypeptidase (penicillin-binding
           protein 5) [Serratia symbiotica str. Tucson]
 gi|320030731|gb|EFW12739.1| putative D-alanyl-D-alanine carboxypeptidase (penicillin-binding
           protein 5) [Serratia symbiotica str. Tucson]
          Length = 403

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 86/333 (25%), Positives = 153/333 (45%), Gaps = 33/333 (9%)

Query: 28  IQLMGKILFLSIIMISMASELHAK--------------PKYSSIVIDVNKNQMTGF-KQD 72
            +L+ +I   ++I +S A+  HA                  + I+ID N  ++      D
Sbjct: 7   FRLIKRIALSTVITMSAATVAHADEVNIKTMIPGVPQIDAAAYILIDYNSGKVLAEMNAD 66

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYF 126
             R PASLTKMMT Y+I   L++ K+     + V + A        +  S ++L+     
Sbjct: 67  ARRDPASLTKMMTSYVIGHTLKAGKIGQEDLVTVGQDAWATGNPVFKGSSLMFLRPGDRV 126

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           +  +    +  +S ND   A  ++++GS+  F  LM+    K+G+QNT ++   GL  + 
Sbjct: 127 SVAKLSRGINLQSGNDACVAMADYVAGSQDAFVNLMNTYVNKLGLQNTHFQTVHGLDAQG 186

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYT 245
           Q ++ARD A++G  L ++ P  Y  +  ++F + N    N N LL     N+DGIKTG+T
Sbjct: 187 QYSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHT 246

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS---FLEK-KTLKHQQ---- 297
             +G+N+V S       +++ V+G  T + R+ ++ +L+T    F E    LK  +    
Sbjct: 247 DAAGYNLVASATAGQMRLISAVLGGRTYKGRETESKKLLTWGFRFFETVAPLKVGKEFAS 306

Query: 298 ---THRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
                  D+     + K + +   +      K 
Sbjct: 307 EPVWFGNDDRVDLGVDKDVYLTIPRGRMKDLKA 339


>gi|42543137|pdb|1NZO|A Chain A, The Crystal Structure Of Wild Type Penicillin-Binding
           Protein 5 From E. Coli
 gi|46014978|pdb|1NZU|A Chain A, Wild-Type Penicillin-Binding Protein 5 From E. Coli
           Modified By Beta-Mercaptoethanol
 gi|71042191|pdb|1Z6F|A Chain A, Crystal Structure Of Penicillin-Binding Protein 5 From E.
           Coli In Complex With A Boronic Acid Inhibitor
 gi|197305030|pdb|3BEB|A Chain A, Crystal Structure Of E. Coli Penicillin-Binding Protein 5
           In Complex With A Peptide-Mimetic Penicillin
 gi|197305031|pdb|3BEC|A Chain A, Crystal Structure Of E. Coli Penicillin-Binding Protein 5
           In Complex With A Peptide-Mimetic Cephalosporin
 gi|326327867|pdb|3MZD|A Chain A, Structure Of Penicillin-Binding Protein 5 From E. Coli:
           Cloxacillin Acyl-Enzyme Complex
 gi|326327868|pdb|3MZE|A Chain A, Structure Of Penicillin-Binding Protein 5 From E.Coli:
           Cefoxitin Acyl- Enzyme Complex
 gi|326327869|pdb|3MZF|A Chain A, Structure Of Penicillin-Binding Protein 5 From E. Coli:
           Imipenem Acyl- Enzyme Complex
          Length = 363

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 76/256 (29%), Positives = 129/256 (50%), Gaps = 11/256 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 8   MIPGVPQIDAE---SYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFK 64

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A        +  S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 65  ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 124

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 125 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYK 184

Query: 214 IRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL     N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 185 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 244

Query: 273 SQERDQKALELITSFL 288
            + R+ ++ +L+T   
Sbjct: 245 FKGREAESKKLLTWGF 260


>gi|251796348|ref|YP_003011079.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. JDR-2]
 gi|247543974|gb|ACT00993.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. JDR-2]
          Length = 405

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 77/276 (27%), Positives = 144/276 (52%), Gaps = 8/276 (2%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           AS   A    S++++D +   +   K       PAS+TK+MT+ +I E L   K+ L  +
Sbjct: 47  ASLDLAPSARSAVLMDADSGTVIYEKDSNVKLPPASITKVMTMLLIMEALDDGKIKLTDK 106

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           +P S+ AA+   S+++L+     T ++ +  +   S ND S A  E ++GSE++F ++M+
Sbjct: 107 VPTSEYAASMGGSQIFLEPGEEMTVDEMLKGIAMASGNDASVAMAEKLAGSEQQFVVMMN 166

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFR 218
            KA+++G+QNT + N +GL   +  T+A D A++   L K   +  KY       +RK  
Sbjct: 167 EKAQQLGLQNTHFANCNGLPAADHYTSAHDIAVMSRELLK-HSEITKYTGSYQDYLRKTS 225

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
            +   + N NKL+      DG+KTG+T  + F +  + +  +  ++AVVMG P ++ R+ 
Sbjct: 226 EKPFWLVNTNKLVRFYSGADGLKTGFTNEAKFCLTATAKRDNLRVIAVVMGEPNTKTRNA 285

Query: 279 KALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLM 314
           +  +++     + T  H      D + +  ++K  +
Sbjct: 286 EVSQMLDFTFAQYTT-HPIFKEGDTMGTIKVEKGAV 320


>gi|116254096|ref|YP_769934.1| penicillin-binding protein precursor [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115258744|emb|CAK09850.1| putative penicillin-binding protein precursor [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 377

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 93/307 (30%), Positives = 159/307 (51%), Gaps = 9/307 (2%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQD-EPRYPASLTK 82
           + +L   +  LS +  + A  L + P   +   I++DV   ++   ++     YPASLTK
Sbjct: 5   HFRLFAALRPLSFVSAATAVFLTSVPLAQANPHILVDVQTGRVLEHEEAFRKWYPASLTK 64

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT+Y +F+ +++ ++ L+T + +SK AA Q  +K+Y K     T +  +  L+ +SAND
Sbjct: 65  LMTVYTVFDAIRAGQISLDTPVVISKRAAAQPAAKMYFKPGQKLTLDSALKILLVKSAND 124

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
           V+ A  E I G+++ F   M+ +A K+GM ++ + N +GL  K Q TTARD A+L + LR
Sbjct: 125 VAVAVAEAIGGTQEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALR 184

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           ++FPQY  YFS+  F    + + N N L+ +    DG+KTG+   SGFN + S       
Sbjct: 185 RDFPQYAGYFSLEGFTNGQQNVPNLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRT 244

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKK-----TLKHQQTHRKDNLSSTSLKKSLMIKK 317
           +V+VV+G  +   R      L+      +     TL   + +       T +   +   K
Sbjct: 245 LVSVVLGTDSLAARADATANLLQKGFTTQPASNDTLGSLRPYGVGQDQVTDIGADICSAK 304

Query: 318 LKRTYSQ 324
             +  S+
Sbjct: 305 GAKVRSE 311


>gi|157146752|ref|YP_001454071.1| D-alanyl-D-alanine carboxypeptidase fraction A [Citrobacter koseri
           ATCC BAA-895]
 gi|157083957|gb|ABV13635.1| hypothetical protein CKO_02526 [Citrobacter koseri ATCC BAA-895]
          Length = 403

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 79/289 (27%), Positives = 134/289 (46%), Gaps = 19/289 (6%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNKNQMT 67
             + +  R +Q M     L    I+ A             +      S I+ID N  ++ 
Sbjct: 1   MKTTFSARFMQRMALTTALCAAFITSAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVL 60

Query: 68  GFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYL 120
             +  D  R PASLTKMMT Y+I + +++ K      + +   A        +  S ++L
Sbjct: 61  AEQNADTRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFL 120

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           K        Q I  +  +S ND   A  +F +GS+  F  LM++    +G++NT ++   
Sbjct: 121 KPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVH 180

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
           GL    Q ++ARD A++G  L ++ P  Y  +  ++F +      N N LL     N+DG
Sbjct: 181 GLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDG 240

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           IKTG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T   
Sbjct: 241 IKTGHTDKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLTWGF 289


>gi|83310217|ref|YP_420481.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum
           AMB-1]
 gi|82945058|dbj|BAE49922.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum
           AMB-1]
          Length = 435

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 108/264 (40%), Positives = 161/264 (60%), Gaps = 4/264 (1%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTL 86
           ++L+   L ++II ++  +E     +Y+SIVID     +      D   YPASLTK+MTL
Sbjct: 12  LRLIAVALGVAIIAVAQPAEA---GRYASIVIDAENGSVLHAANPDTRSYPASLTKVMTL 68

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           +++F+ L S ++ L+++   S  AA Q+PSKL L+     + E  ILAL+T+SAND +  
Sbjct: 69  FLLFDELDSGRIRLDSKFTTSAHAAAQSPSKLGLEPGEKISVESLILALVTKSANDAAVV 128

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E + G+E +FA +M+ KA  +GM+NT+Y+NASGL D  Q++T RDQA L   L ++ P
Sbjct: 129 AAEGVGGTETRFAHMMTQKAHALGMRNTVYRNASGLPDTGQVSTVRDQATLARALIRSHP 188

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
            YYKYFS R+F Y  + I  HN+L+ +    DGIKTGY   SGFN+++S +  D  I+ V
Sbjct: 189 GYYKYFSTRQFVYDGQPINTHNRLMLRYQGADGIKTGYIHASGFNLISSAKRGDKRIIGV 248

Query: 267 VMGMPTSQERDQKALELITSFLEK 290
           V G  T+  RD    +L+     K
Sbjct: 249 VFGGSTASSRDNHMGQLLDKGFAK 272


>gi|291618006|ref|YP_003520748.1| DacD [Pantoea ananatis LMG 20103]
 gi|291153036|gb|ADD77620.1| DacD [Pantoea ananatis LMG 20103]
          Length = 386

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 72/278 (25%), Positives = 131/278 (47%), Gaps = 11/278 (3%)

Query: 24  IQRNIQLMGKILFLSIIM---ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPAS 79
           ++R + +   + + S+     +       A    S +++D    Q+      DE R PAS
Sbjct: 2   LKRRLLITVTVFWASLAQADDMPFPVTPPAIDAASWVLMDATTGQVLTAGNPDERRNPAS 61

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++   +  KK+  +  + V K A        +  S ++LK     +      
Sbjct: 62  LTKLMTGYVVDRAIDQKKITRDDMVTVGKDAWAAGNPVFKGSSLMFLKPGDKLSVRDLSR 121

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I  S ND   A  ++++GS+  F  LM++  +K+G+ NT ++   GL    Q ++A D
Sbjct: 122 GVIIDSGNDACVALADYVAGSQDNFVKLMNHYVEKLGLTNTHFETVHGLDAPGQFSSALD 181

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNI 252
            A L   +    P +Y  +  +   +      N N LL     ++DG+KTG+T  +GFNI
Sbjct: 182 MAKLSRAIIDGEPDFYAMYREKTLTWNGITQNNRNGLLWDNSLHVDGLKTGHTETAGFNI 241

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           + S       ++AVVMG  +++ R+++A +L+      
Sbjct: 242 IASNVVGQHRLIAVVMGGKSAKGREEQARKLLVWGQNT 279


>gi|163759954|ref|ZP_02167038.1| putative penicillin-binding protein [Hoeflea phototrophica DFL-43]
 gi|162282912|gb|EDQ33199.1| putative penicillin-binding protein [Hoeflea phototrophica DFL-43]
          Length = 371

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 89/275 (32%), Positives = 147/275 (53%), Gaps = 6/275 (2%)

Query: 56  SIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           SI +DV   ++   +   +  YPASLTK+MT Y+ F  ++S ++ ++T + +S  AA + 
Sbjct: 5   SIAVDVGSGRVIAHEDAFQRWYPASLTKIMTAYVAFSAVKSGQMSMDTPVTMSIHAAKEP 64

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           PSK+Y K    F  +  +  L+ +SANDV+ A  E +SGSE+ F   M+  AK +GMQ T
Sbjct: 65  PSKMYFKPGERFPLDSALKYLMVKSANDVAVAIAEAVSGSEEAFVREMNATAKALGMQAT 124

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            + N +GL    Q TTARD A+L    R+NFP+Y +YF    F    ++ TN+N L+ + 
Sbjct: 125 RFVNPNGLPGSGQYTTARDMAVLAAAARRNFPEYAQYFGYEGFSVGKQVHTNYNLLIGRF 184

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK--- 291
              DG+KTG+   SGFN V+S       +V+VV+G P+   R +++  L+ + L      
Sbjct: 185 QGADGMKTGFICASGFNQVSSATRNGRTVVSVVLGAPSQTARAERSAALLQAALTSSGSV 244

Query: 292 --TLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
             +L     + +   +   +   +   + +    +
Sbjct: 245 SPSLASLAPYGEGRDAVADISAQICSSEARAARDK 279


>gi|320175126|gb|EFW50238.1| D-alanyl-D-alanine carboxypeptidase [Shigella dysenteriae CDC
           74-1112]
 gi|320185393|gb|EFW60163.1| D-alanyl-D-alanine carboxypeptidase [Shigella flexneri CDC 796-83]
 gi|332097731|gb|EGJ02705.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella boydii 3594-74]
          Length = 403

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 135/287 (47%), Gaps = 19/287 (6%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNKNQMTGF 69
           +I+  R ++ +     L    IS A             +      S I+ID N  ++   
Sbjct: 3   TIFSARIMKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAE 62

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKE 122
           +  D  R PASLTKMMT Y+I + +++ K      + +   A        +  S ++LK 
Sbjct: 63  QNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKP 122

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
                  Q I  +  +S ND   A  +F +GS+  F  LM++    +G++NT ++   GL
Sbjct: 123 GMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGL 182

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIK 241
               Q ++ARD A++G  L ++ P  Y  +  ++F +      N N LL     N+DGIK
Sbjct: 183 DADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIK 242

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           TG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T   
Sbjct: 243 TGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGF 289


>gi|238762884|ref|ZP_04623852.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia kristensenii
           ATCC 33638]
 gi|238698895|gb|EEP91644.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia kristensenii
           ATCC 33638]
          Length = 403

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 77/256 (30%), Positives = 133/256 (51%), Gaps = 11/256 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   + ++ID N  ++      D  R PASLTKMMT Y+I + +++ K+ 
Sbjct: 37  MIPGVPQIDAE---AYVLIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGKIG 93

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V K A        +  S ++LK        +    +  +S ND   A  ++++G
Sbjct: 94  PEDMVTVGKDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+N  K +G+QNT +K   GL  + Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDSFVNLMNNYVKALGLQNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAIYK 213

Query: 214 IRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F + N    N N LL     N+DGIKTG+T  +G+N+V S       +++ V+G  T
Sbjct: 214 EKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTEAAGYNLVASATDGQMRLISAVLGGHT 273

Query: 273 SQERDQKALELITSFL 288
            + R+ ++ +L+T   
Sbjct: 274 YKGRETESKKLLTWGF 289


>gi|294501138|ref|YP_003564838.1| D-alanine-D-alanine carboxypetidase [Bacillus megaterium QM B1551]
 gi|294351075|gb|ADE71404.1| D-alanine-D-alanine carboxypetidase [Bacillus megaterium QM B1551]
          Length = 388

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 157/301 (52%), Gaps = 14/301 (4%)

Query: 24  IQRNIQLMGKILFLSIIMI--SMASELH----AKPKYSSIVIDVNKNQMTGFKQ-DEPRY 76
           ++R I  +  ++FL  +M    +A+E      A    S+I+I+ +  ++   K  ++   
Sbjct: 1   MKRTIVKLLVVIFLFPLMTQPVLAAEKKNSELADSARSAILIERDTGKILYEKNSNQELP 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +I E L   K+ L  ++  S+ AA+   S+++L+     T    +  + 
Sbjct: 61  PASMTKIMTMILIMEALDKGKITLKDKVRASEYAASMGGSQIFLEPGEEMTVNDLLKGIA 120

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND S A  E+++GSE+KF   M+ KAK++G+ +T ++N +GL  +N  +TA D A+
Sbjct: 121 IGSGNDASMAMAEYLAGSEEKFVAKMNQKAKELGLTHTQFQNPTGLPVENHYSTAHDMAM 180

Query: 197 LGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +G  L K + +   Y S     +R    +   + N N+L+     +DG+KTG+T  + + 
Sbjct: 181 MGRELLK-YEKIINYTSKYEAYLRTDTDKKFWLVNTNRLVKFYPGVDGLKTGFTGQAKYC 239

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
           +  + +  +  ++AVV G  T ++R+ +  +++     + T K     + D ++   + K
Sbjct: 240 LTATAKKGNMRVLAVVFGASTPKDRNNQVTKMLDYAFSQYTTK-PLYKKGDVITKIDVNK 298

Query: 312 S 312
            
Sbjct: 299 G 299


>gi|297180033|gb|ADI16258.1| d-alanyl-d-alanine carboxypeptidase [uncultured bacterium
           HF0010_16H03]
          Length = 384

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 79/266 (29%), Positives = 136/266 (51%), Gaps = 8/266 (3%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
            +  A EL+ K   S I+I+ N N +           PAS+TK+MT Y++ + + +  + 
Sbjct: 19  FVPDAPELNLK---SYILIEPNTNTVIAEFNSSSEIEPASMTKIMTSYVVADQIANGLIS 75

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           L  Q+ +S+ A     SK++++     +    +  +I +S ND S A  E+  G+E+ F 
Sbjct: 76  LEDQVLISEKAWRMGGSKMFIEAGKKVSISNLLKGIIIQSGNDASVAISEYAGGTERGFV 135

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            LM+  A  +GM NTI++N++GL D+N  ++A+D A L       FP  Y  +  ++F +
Sbjct: 136 DLMNAYADSLGMNNTIFQNSTGLPDENHFSSAKDLATLTSNFIIKFPDIYSLYKEKQFTF 195

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            N    N NKLL +  + DG+KTG+T  +G+ +V S +  D  ++ VV G  T   R   
Sbjct: 196 NNIKQLNRNKLLWRDESSDGVKTGHTEAAGYCLVGSAKRGDMRLITVVAGSDTDNNRFLA 255

Query: 280 ALELITSFL----EKKTLKHQQTHRK 301
           +  L+         +K L   + ++K
Sbjct: 256 SQRLLEYGFRFFATQKVLNANEEYKK 281


>gi|222109487|ref|YP_002551751.1| serine-type d-ala-d-ala carboxypeptidase [Acidovorax ebreus TPSY]
 gi|221728931|gb|ACM31751.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidovorax ebreus TPSY]
          Length = 387

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 80/268 (29%), Positives = 146/268 (54%), Gaps = 15/268 (5%)

Query: 36  FLSIIMISMA---SELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           F    +++ A   +++   P+ ++   +++DV   Q+   K  D P   ASLTK+MT Y+
Sbjct: 11  FACAALMAPAILWAQVPQPPEIAARNYMLVDVTAGQVLATKDIDAPVEQASLTKLMTGYL 70

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           +F+ L++KK+ L  ++PVS+ A     S++++  K     +  +  +I +S ND + A  
Sbjct: 71  VFDALRAKKITLEQRLPVSERAWKMPGSRMFIDPKMQVPVDDLLKGMIVQSGNDATVALA 130

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E + G+ + F  LM+ +AK +GM NT YKN  GL +    TTARD A L   L ++FP+Y
Sbjct: 131 EGVGGTVENFVRLMNEQAKALGMTNTAYKNPEGLTEPGHTTTARDLATLATRLMQDFPEY 190

Query: 209 YKYFSIRKFRYRNRI---ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-----KD 260
             Y+S +++RY         N N LL +  ++DG+KTG+T  +G+ +V + +        
Sbjct: 191 MHYYSTKQYRYEGTPASNSNNRNMLLFRDPSVDGLKTGHTAAAGYCLVATSKREFPNVGQ 250

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFL 288
             ++++V+G  +   R  ++ +L+    
Sbjct: 251 RRLLSIVLGAASENARANESQKLLNWGY 278


>gi|226311980|ref|YP_002771874.1| D-alanyl-D-alanine carboxypeptidase precursor [Brevibacillus brevis
           NBRC 100599]
 gi|226094928|dbj|BAH43370.1| putative D-alanyl-D-alanine carboxypeptidase precursor
           [Brevibacillus brevis NBRC 100599]
          Length = 394

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 84/339 (24%), Positives = 157/339 (46%), Gaps = 29/339 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNKNQMTGFKQ- 71
           ++RN  L    L    I   MA               A    S+++I+ +   +   K  
Sbjct: 1   MKRNGYLALCFLMCFTIFSPMAIAKEKAGQQKSDNHFAPQASSAVMIEADTGTVLYEKNA 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +E   PAS+TK+MT+ +I E ++  +L L  ++  S+ AA+   S+++L+     T E  
Sbjct: 61  NEKMPPASITKVMTMLLIMEAVERGELKLTDKVRTSERAASMGGSQIFLQPGEEMTVEDM 120

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  +   S ND S A  E ++G+E+ F   M+ +A+++GM+NT + N++GL   N  ++A
Sbjct: 121 LKGIAIASGNDASVAMAEHLAGTEESFVTRMNERAQQLGMKNTHFVNSNGLPAANHYSSA 180

Query: 192 RDQAILGILLRKN--FPQYYKYFS--IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRN 247
            D AI+   L K+    ++   +   +RK       + N NKL+     +DG+KTGYT  
Sbjct: 181 GDIAIMSRELLKHEGITKFTGTYQDYLRKDTESPFWLVNTNKLVRFYEGVDGLKTGYTGE 240

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK-------------KTLK 294
           + + +  + +  +  ++AVV+G P  + R+ +   +                    +TL 
Sbjct: 241 AKYCLTATAKRNNMRVIAVVLGEPDVKTRNNEVSTMFNYAFTHFKVTPMYKKGEPVRTLV 300

Query: 295 HQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAH 333
             +  +    + T    SL++KK +   +  K+I  K  
Sbjct: 301 VDKGQKSQINAVTPHAVSLLMKKGESADTFQKEIVIKEA 339


>gi|167585315|ref|ZP_02377703.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ubonensis
           Bu]
          Length = 438

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 76/246 (30%), Positives = 135/246 (54%), Gaps = 10/246 (4%)

Query: 53  KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             S +++D   N +      DE   PASLTK+MT Y++FE L  KK+ +   +  S    
Sbjct: 81  ARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSAAVR 140

Query: 111 -ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
               + S+++++     +    +  +I +S ND + A  E + GSE +F  +M+++AK++
Sbjct: 141 RVGTDESRMFIEADKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNDEAKRL 200

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM+ T + + +G+ D N  TTA D A L   L ++FPQYY  FS ++F+Y N    N N+
Sbjct: 201 GMKGTHFADVNGMPDPNHYTTAGDLATLSAHLIRDFPQYYGIFSEKEFKYNNIRQGNRNR 260

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD-------DPIVAVVMGMPTSQERDQKALE 282
           LL     +DG+KTG+T+ +GF +++S + +          +V+V+MG     +R Q +++
Sbjct: 261 LLWLDPTVDGLKTGHTQAAGFCLISSAKRQMPGTADAPRRLVSVMMGETKESDRTQDSMK 320

Query: 283 LITSFL 288
           ++    
Sbjct: 321 MLNYGY 326


>gi|13474143|ref|NP_105711.1| penicillin-binding protein [Mesorhizobium loti MAFF303099]
 gi|14024895|dbj|BAB51497.1| penicillin-binding protein [Mesorhizobium loti MAFF303099]
          Length = 304

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 114/279 (40%), Positives = 174/279 (62%), Gaps = 6/279 (2%)

Query: 24  IQRNIQLMGKILFLSIIMISMASE----LHAKP-KYSSIVIDVNKNQMTGF-KQDEPRYP 77
           +QR +  +G +L ++    +   +    + A P KY++IV+DV   +          RYP
Sbjct: 17  LQRVLVALGLLLMVAGCSTATPPDQVLTVPAPPQKYAAIVVDVKTGKQMFEVNSTAQRYP 76

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTKMMTLY++FE ++S ++   TQIPVS  AA+Q P+K+  +       +  I A++ 
Sbjct: 77  ASLTKMMTLYLLFEAMESGRVTKETQIPVSDHAASQPPTKMRFRRGETIDVDSAIRAIVV 136

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +SANDV+ A GE++ GSE +FA +M++KA+ +GM +T ++NASGL D  Q+TTARD A+L
Sbjct: 137 KSANDVAVAVGEYLGGSEDRFAAMMTSKARSLGMTSTTFRNASGLPDDGQMTTARDMAVL 196

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
           G+ LR+ FPQ++ YFS   F +R R++  HN +L ++  +DGIKTGY R SGFNIVTS  
Sbjct: 197 GMALRQRFPQHFHYFSESDFMFRGRLVRGHNDMLGRVRGVDGIKTGYIRASGFNIVTSYN 256

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQ 296
                ++ VVMG  ++++R+     LI   L   T   +
Sbjct: 257 ADGRQLIVVVMGADSARQRNDHVEALIQRSLSPTTADSK 295


>gi|15829924|ref|NP_308697.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O157:H7 str. Sakai]
 gi|13360128|dbj|BAB34093.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O157:H7 str. Sakai]
          Length = 403

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 135/287 (47%), Gaps = 19/287 (6%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNKNQMTGF 69
           +I+  R ++ +     L    IS A             +      S I+ID N  ++   
Sbjct: 3   TIFSARIMKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAE 62

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKE 122
           +  D  R PASLTKMMT Y+I + +++ K      + +   A        +  S ++LK 
Sbjct: 63  QNADVRRDPASLTKMMTSYVIGQAMKAGKFKDTDLVTIGNDAWATGNPVFKGSSLMFLKP 122

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
                  Q I  +  +S ND   A  +F +GS+  F  LM++    +G++NT ++   GL
Sbjct: 123 GMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGL 182

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIK 241
               Q ++ARD A++G  L ++ P  Y  +  ++F +      N N LL     N+DGIK
Sbjct: 183 DADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIK 242

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           TG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T   
Sbjct: 243 TGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGF 289


>gi|302871646|ref|YP_003840282.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574505|gb|ADL42296.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 386

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 79/284 (27%), Positives = 139/284 (48%), Gaps = 14/284 (4%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I++D +  ++   K   E   PAS+TK+MT+ +I E ++  ++ L+ ++  S+ A+
Sbjct: 41  AKSAILVDFDTGKILYEKNSHEKLPPASITKIMTMILICEAIEKGRIKLSDKVVASQNAS 100

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S++YLKE    T E+ + ++   SAND   A  E I+GS ++F  +M+ KAK++GM
Sbjct: 101 SLGGSQVYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYMMNKKAKELGM 160

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKN-FPQYYKYFSIRKFRYRNRIITNHNKL 230
            +T + N  GL  +N  T+A D AI+   L K+   + Y    +   R     +TN NKL
Sbjct: 161 LDTNFVNPYGLDAENHYTSAYDVAIMSRELLKHKIIRKYLTTWVDTIREGKFGLTNTNKL 220

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +       G+KTG T  + F I  S       ++AV+MG P S+ R   A +++      
Sbjct: 221 VRFYRGCTGVKTGSTDKAKFCISASALRNGLHLIAVIMGAPDSKTRFNDATKVLDWGFAN 280

Query: 291 KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
            ++             +   K     K+K      K+++    +
Sbjct: 281 FSMY------------SPYSKGFCFGKVKVKNGIEKEVEVILST 312


>gi|225182115|ref|ZP_03735543.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
           AHT 1]
 gi|225167202|gb|EEG76025.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
           AHT 1]
          Length = 382

 Score =  280 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 72/261 (27%), Positives = 128/261 (49%), Gaps = 5/261 (1%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +++++ +  Q    K  D P  PAS TK+MTL + FE L+   +  +    VS+ A +  
Sbjct: 32  AVLMEASSGQFLYEKNADTPLPPASTTKIMTLLLAFEALERGDIDWDDTTIVSRNAWSAE 91

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S+++L      +    I  +   SAND + A  E +SGSE+ F   M+ +A+++GM 
Sbjct: 92  VVGSRMFLDLDQEVSIRDLIYGISIVSANDGTVALAEHLSGSEEAFVQQMNQRAQELGMT 151

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN-KLL 231
           NT+++N SGL     + +ARD AIL   L  N P      +  +F + +    N N + L
Sbjct: 152 NTVFRNTSGLPADGHVMSARDIAILSRELIVNHPGILDIETQPEFTFNDIHQYNWNRRFL 211

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
           +     +G+KTG+T  S FN+  +       +++VVMG  +  ER     EL+     + 
Sbjct: 212 SSFEGANGLKTGWTDESRFNLAGAALRDGRQLISVVMGAESESERVAATSELLNHGFNQF 271

Query: 292 TLKHQQTHRKDNLSSTSLKKS 312
           + +     + + ++  ++K  
Sbjct: 272 SPQ-TIAQKGEVVAEVAVKDG 291


>gi|28199163|ref|NP_779477.1| penicillin-binding protein 6 precursor [Xylella fastidiosa
           Temecula1]
 gi|182681894|ref|YP_001830054.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa M23]
 gi|28057261|gb|AAO29126.1| penicillin-binding protein 6 precursor [Xylella fastidiosa
           Temecula1]
 gi|182632004|gb|ACB92780.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa M23]
 gi|307578148|gb|ADN62117.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 396

 Score =  280 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 81/289 (28%), Positives = 147/289 (50%), Gaps = 17/289 (5%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
            +V+D    Q+   +       PASLTK+MT Y+I   +++ K+H + Q+ +++ A  + 
Sbjct: 47  WVVMDYASGQVLAGENIHTHLAPASLTKVMTSYVIAAEIKNGKVHRDDQVMMTENAWRKG 106

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S            E     +I +S ND + A  + ++GSE+ FA LM++ A++I
Sbjct: 107 GAGTDGSYSGFPVNKTARLEDMEQGMIVQSGNDAAIALAQHVAGSEEAFASLMNSYAQRI 166

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM+N+ + +A+GL  +   ++A D A+LG  L ++FP+ Y Y  +++        +N N 
Sbjct: 167 GMKNSHFVDATGLSAEGHYSSAYDMALLGRALIRDFPETYAYNKVKELVVNGIKQSNRNL 226

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS--- 286
           LL +  ++DGIKTG+T  +G+ I+ S +  D  I+ VVMG  + ++R + +L L+     
Sbjct: 227 LLWRDPSVDGIKTGHTSEAGYCIINSAKRGDQRILTVVMGDVSEKKRAEDSLALLNWGFR 286

Query: 287 FLEKKTL--------KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
           F E  TL        KH+    + +     + + L +   +  Y+  K 
Sbjct: 287 FFETHTLYEPGKVVTKHKIWKGQVSEVQLGVPRPLFVTVQRGRYNDLKP 335


>gi|300930715|ref|ZP_07146093.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           187-1]
 gi|301330462|ref|ZP_07223080.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1]
 gi|300461436|gb|EFK24929.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           187-1]
 gi|300843583|gb|EFK71343.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1]
 gi|332092389|gb|EGI97462.1| D-alanyl-D-alanine carboxypeptidase dacD [Shigella boydii 5216-82]
          Length = 347

 Score =  280 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 126/242 (52%), Gaps = 8/242 (3%)

Query: 59  IDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---- 113
           +D    Q+     + + R PASLTK+MT Y++   + S ++  +  + V + A  +    
Sbjct: 1   MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60

Query: 114 --NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S ++LKE    +       LI  S ND   A  ++I+G +++F  +M+N A+K+ +
Sbjct: 61  FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL
Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180

Query: 232 N-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
             K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R+++A +L+    + 
Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEAKKLLRWGQQN 240

Query: 291 KT 292
            T
Sbjct: 241 FT 242


>gi|319781232|ref|YP_004140708.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317167120|gb|ADV10658.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 387

 Score =  280 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/300 (29%), Positives = 156/300 (52%), Gaps = 8/300 (2%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSK 96
           +I +  +A    A P    +V D+   ++   +   +  YPASL+K+MT Y+ F  + + 
Sbjct: 14  TIALSVVAGPALANPV---VVFDLGSGKILQHQDAFKRWYPASLSKLMTAYVTFRAIAAG 70

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           ++ L++ I V+K +A + PSK+  K  +    +  +  ++ +SAND++ A GE + GS+ 
Sbjct: 71  EVQLDSPIKVTKHSAAEPPSKMGFKPGSVMRLDNALKMMLVKSANDIAMAVGENVGGSQA 130

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            FA  M+ +A ++GM  T + N +GL+  +Q TTARD A+L + +R+ FPQY  +FSI  
Sbjct: 131 AFADRMNAEATRLGMNGTHFVNPNGLYSPDQYTTARDLAVLVMAIRREFPQYVPWFSIEG 190

Query: 217 FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
                + I N+N L+ +    DG+KTG+   SGFN++ S       +VAVV+G  ++  R
Sbjct: 191 LAVGKKAIPNYNLLIGRYPGADGMKTGFVCPSGFNMIGSATRNGRTLVAVVLGEKSAVTR 250

Query: 277 DQKALELITSFLEKKTLKHQQTH----RKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
            + A +L+    +                D +S   ++  +  KK  +  S+     AK 
Sbjct: 251 AETAAKLLDQGFDTPVAGSATVTTLAPYGDTVSPNDMQDEVCKKKTPQEQSEAPPAAAKN 310


>gi|326391076|ref|ZP_08212623.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992861|gb|EGD51306.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 379

 Score =  280 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 85/322 (26%), Positives = 147/322 (45%), Gaps = 29/322 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           +++ I  +  +L+    +   A    +    ++IV+D    ++   K    + P AS TK
Sbjct: 1   MKKFILYLFILLYFMSSVKVYAESYPSISAKAAIVMDQETGRVLYEKNSHEKLPMASTTK 60

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MTL +  E     K +LN  + VSK AA+   S ++L        E  +  L+  S ND
Sbjct: 61  IMTLLVALE-----KGNLNDIVTVSKRAASVGGSSIWLSPGEKIDMESLLFGLMLNSGND 115

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILGIL 200
            +TA  E I GS + F  +M+ KAK+IG  NT +   SGL     +  TTA D A++   
Sbjct: 116 AATAIAEHIGGSVESFVEIMNQKAKEIGAYNTHFVTPSGLDIGIDDHYTTAYDLALITRY 175

Query: 201 LRKNFPQYYKYFSIRKFRYR------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
             + +P++ +  S ++          +R + N NKLL      DG+KTG+T  +G  +V+
Sbjct: 176 AFR-YPKFAEIVSTKEKTIPWEGKEWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVS 234

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK----KTLKHQQTHR-------KDN 303
           S   +    +AVV+  P   E    +++++     K    K L+  +  +       K+N
Sbjct: 235 SATREGRRFIAVVLNSPPMWE---DSMKILDYAFSKYKPYKVLEKGELIKKVKVEGGKEN 291

Query: 304 LSSTSLKKSLMIKKLKRTYSQF 325
             S   +K+ +I  L+      
Sbjct: 292 TVSVVSEKACVIPALEEEKQNV 313


>gi|238758038|ref|ZP_04619219.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia aldovae ATCC
           35236]
 gi|238703792|gb|EEP96328.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia aldovae ATCC
           35236]
          Length = 403

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 77/256 (30%), Positives = 133/256 (51%), Gaps = 11/256 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   + ++ID N  ++      D  R PASLTKMMT Y+I + +++ K+ 
Sbjct: 37  MIPGVPQIDAE---AYVLIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGKIG 93

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V K A        +  S ++LK        +    +  +S ND   A  ++++G
Sbjct: 94  PEDMVTVGKDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+N  K +G+QNT +K   GL  + Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDSFVNLMNNYVKALGLQNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAIYK 213

Query: 214 IRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F + N    N N LL     N+DGIKTG+T  +G+N+V S       +++ V+G  T
Sbjct: 214 EKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTEAAGYNLVASATDGQMRLISAVLGGHT 273

Query: 273 SQERDQKALELITSFL 288
            + R+ ++ +L+T   
Sbjct: 274 YKGRETESKKLLTWGF 289


>gi|153832244|ref|ZP_01984911.1| penicillin-binding protein 6 [Vibrio harveyi HY01]
 gi|148871555|gb|EDL70410.1| penicillin-binding protein 6 [Vibrio harveyi HY01]
          Length = 388

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 74/275 (26%), Positives = 136/275 (49%), Gaps = 7/275 (2%)

Query: 28  IQLMGKIL--FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMM 84
           I L   +L  F +  +  +            +++D     +   +       PASLTK+M
Sbjct: 8   ITLACLLLQTFSAPALAVVTPNPPQLQAKGYVLMDFQSGAIIAEQNARAGLAPASLTKLM 67

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSAN 141
           T Y++   +++ +L+ + ++ VS+ A +    + SK++++ K   T    +  +I +S N
Sbjct: 68  TAYVVGTEIKAGRLNWDDKVTVSENAWSAKFPDSSKMFIQPKDEITVANLMRGVIIQSGN 127

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D   A  E ++GSE  F  LM+  A K+ + +T + N+ GL  +   T+  D A L   +
Sbjct: 128 DACVALAEHVAGSEGAFVALMNGWADKLSLNDTYFVNSHGLDSEGIQTSPNDMATLMQAI 187

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
             + P  Y  +S + F++      N NKLL  K  ++DG KTGYT N+G+++V+S +   
Sbjct: 188 INDVPDVYALYSEKVFKWNKITQYNRNKLLWDKSMDVDGGKTGYTSNAGYSLVSSAKQGK 247

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEKKTLKH 295
             +++VVMG P+ Q R  ++  L++        K 
Sbjct: 248 MRLISVVMGTPSKQSRITQSKNLLSYGFRFYDTKQ 282


>gi|154502522|ref|ZP_02039582.1| hypothetical protein RUMGNA_00335 [Ruminococcus gnavus ATCC 29149]
 gi|153796918|gb|EDN79338.1| hypothetical protein RUMGNA_00335 [Ruminococcus gnavus ATCC 29149]
          Length = 401

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 84/337 (24%), Positives = 162/337 (48%), Gaps = 29/337 (8%)

Query: 24  IQRNIQ-LMGKILFLSIIMIS----MASELHAKPKY-------------SSIVIDVNKNQ 65
           ++R +  L+  +L LS+ ++     +A E  A  K              S+++++ +   
Sbjct: 1   MKRVLAVLLSAVLSLSVAVVPGIQTLAEEPDAAQKTEGQQEAEVEVQAPSAVLMEASTGA 60

Query: 66  MTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKT 124
           +   K  D  R PAS+TK+MT+ +IF+ L+  K+ L  ++  S+ AA+   S+++L+   
Sbjct: 61  VLYEKDADTRRAPASVTKIMTMLLIFDALEDGKIALEDEVSTSEYAASMGGSQVFLEPGE 120

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
             + +  +  +   SAND  TA  E+I+GSE+ F  +M+ +A  +GM+NT ++N +GL  
Sbjct: 121 TQSVDTMLKCISVASANDACTAMAEYIAGSEEAFVKMMNERAAGLGMKNTTFQNCNGLDT 180

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--------ITNHNKLLNKMHN 236
           +  +TTARD A++   L + +P+ + Y  I      +          ++N NKL+ +   
Sbjct: 181 EGHLTTARDIALMSRELIEKYPKIHDYCMIWMDTITHTTKKGTSEFGLSNTNKLVRQYPY 240

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQ 296
             G+KTG T  + F +  +       ++AV++    S++R Q A +L+     K  +   
Sbjct: 241 ATGLKTGSTDEAKFCVSATAEKDGMELIAVILSGENSKQRFQDATKLLNYGFGKCQVYED 300

Query: 297 QTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAH 333
               K  L    ++  +  + L      F+ +D    
Sbjct: 301 NDPPK--LKPIEVQGGVKEQILCEYADTFRYLDTSGA 335


>gi|254293994|ref|YP_003060017.1| serine-type D-Ala-D-Ala carboxypeptidase [Hirschia baltica ATCC
           49814]
 gi|254042525|gb|ACT59320.1| Serine-type D-Ala-D-Ala carboxypeptidase [Hirschia baltica ATCC
           49814]
          Length = 380

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 85/311 (27%), Positives = 155/311 (49%), Gaps = 11/311 (3%)

Query: 33  KILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFE 91
            +L  S+   + A  L+    Y+ I +D +       K  D P  PAS+TK+MT YI+FE
Sbjct: 12  SLLLGSVYTPAYADALNTSADYAYI-MDADTGMALYSKDGDTPFIPASMTKIMTAYIVFE 70

Query: 92  YLQSKKLHLNTQIPVSKTAATQ-----NPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            ++  +L L  +  VS+TA  +       S ++L+  +  +    +  +I +S ND    
Sbjct: 71  RIRDGRLTLEDEFVVSETAWREGGAASGGSTMFLELGSKVSVRDLLRGVIIQSGNDACIV 130

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E ISGS++ FA  M+ +A+++G+ +  ++N +GL+  N   +A D A L  L  K+FP
Sbjct: 131 IAEAISGSQEAFAEEMTRRARELGLDSATFENPTGLYSDNHRISAADLAQLAYLTIKDFP 190

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           ++Y  +S ++F +      N N LL ++   DG+KTG+   SG+ +V S        + V
Sbjct: 191 EFYALYSEKEFTWNGIRQPNRNPLLGEVQGADGLKTGHLEISGYGLVGSAVRDGKRRIIV 250

Query: 267 VMGMPTSQERDQKALELI-TSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQF 325
           + G+ +  ER  +A  ++ ++F++ K ++  Q  +    +   L K    K ++    + 
Sbjct: 251 LNGLDSIAERASEARRVMRSAFVDFKVVEVVQPDQIVGEADVFLGKQ---KTVELKAIEL 307

Query: 326 KKIDAKAHSTQ 336
            K    A S +
Sbjct: 308 MKAALHADSIR 318


>gi|253576351|ref|ZP_04853681.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844244|gb|EES72262.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 396

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 130/252 (51%), Gaps = 7/252 (2%)

Query: 48  LHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
             A+   S+++ID +   +   K+  E   PAS+TK+MT+ +  E + +  L L  ++  
Sbjct: 38  ALAENALSAVLIDADTGTVIYEKKSHEKLPPASITKIMTMLLTMEAIDNGTLKLTDKVTT 97

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
           S+ AA+   S+++L+     T ++ +  +   S ND S A  E I+GSEK F  +M+ +A
Sbjct: 98  SEYAASMGGSQIFLEPGETMTVDELLKGVAMASGNDASVALAEKIAGSEKAFVKMMNERA 157

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRN 221
           +++G+++T + N +GL   +  ++A D AI+   L K   +  KY       +R+   + 
Sbjct: 158 QQLGLKDTHFANCNGLPVADHYSSAYDIAIMSRELLK-HEEITKYTGAYQDYLRQGTEKP 216

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
             + N NKL+      DG+KTGYT  + F +  + +     ++AVV+G P ++ R+ +  
Sbjct: 217 FWLVNTNKLVRFYSGADGLKTGYTSEAKFCLAATAKRDGLRLIAVVLGEPNTKTRNSEVS 276

Query: 282 ELITSFLEKKTL 293
            +      +  L
Sbjct: 277 AMFDYAFSQYAL 288


>gi|182677354|ref|YP_001831500.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182633237|gb|ACB94011.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 538

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 88/262 (33%), Positives = 138/262 (52%), Gaps = 4/262 (1%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYI 88
           L G +   ++   ++     A P    +VID+    +    +   P YPASLTK+MTLY+
Sbjct: 43  LHGGLAIAAVATTTLTDTAQAAPG---LVIDLASGNVIYQSEATRPWYPASLTKLMTLYV 99

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
             + ++  ++  +T + VS  A    PSK+  K  T  T    +  L+ +SAND++    
Sbjct: 100 ALQAVRDHRIGFDTPLVVSARAHAMPPSKMGFKPGTQVTLGNALKMLMVKSANDIAITVA 159

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E I+GS + FA  M+ +A  +G++ + + N +GLH++   ++ARD A+L   L   FPQY
Sbjct: 160 EGIAGSVEAFAEDMNAQAADLGLRQSHFVNPNGLHNEQHYSSARDMALLARALYLRFPQY 219

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              ++I   R  N+II NHN LL +   +DG+KTGYT  +GFNIV S       ++ VV+
Sbjct: 220 ASLYNIGALRLGNQIIQNHNNLLGRYPGVDGMKTGYTCTAGFNIVASAEQSGRRVIVVVL 279

Query: 269 GMPTSQERDQKALELITSFLEK 290
           G P  + R  KA  L       
Sbjct: 280 GSPNVETRTIKAAALFDRAFSN 301


>gi|209549573|ref|YP_002281490.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209535329|gb|ACI55264.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 291

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 103/280 (36%), Positives = 161/280 (57%), Gaps = 4/280 (1%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLY 87
           +L+   L  ++++ +      A+   +S V+D    Q+     QD+  YPASLTKMMTLY
Sbjct: 7   RLLATALSSAVLLGAF---TLAEAGQASFVVDAQSGQVLEASNQDDLNYPASLTKMMTLY 63

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + FE L   +L  + ++ +S+ A ++ P KL +      T  + + +++  SAND + A 
Sbjct: 64  LAFEALHEGRLTWDQKLTMSENAESKEPFKLAVGAGRQVTLREAVESIVVLSANDSAVAI 123

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E + GSE+ FA  M++KA+++GM NT+++N SGL D  Q+T+ARD A LGI L ++FP+
Sbjct: 124 AEQLGGSEQAFAKAMTDKARQLGMTNTVFRNPSGLPDPEQVTSARDMATLGISLMRDFPE 183

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            +K FS+R F++R   +  HN L+ +   +DGIKTGYT  SG+N+VTS       +V VV
Sbjct: 184 EFKLFSMRGFQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKDGRRVVGVV 243

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSST 307
           MG  T+  RD K   L+ S L   +     T       +T
Sbjct: 244 MGEKTASLRDDKMAGLLDSTLPSSSTATASTMPGKQPGAT 283


>gi|144899826|emb|CAM76690.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 387

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 76/240 (31%), Positives = 132/240 (55%), Gaps = 5/240 (2%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ- 113
           +I+ID     +   K  DE   P+S++K+MT Y++FE L+     ++ Q+PVS+TA  + 
Sbjct: 37  AILIDYKTGTILLEKNSDELMVPSSMSKLMTAYLVFEKLKEGSWKMDDQLPVSETAWKRH 96

Query: 114 ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S ++L   +       I  +I +S ND  +   E  SG+E+ FA   + KA+ +G
Sbjct: 97  FKSGGSLMFLPVGSSAKVGDLIRGVIIQSGNDACSVLAEAHSGTEEAFAEEATRKARDLG 156

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M +T  +NASG  D   +TTARD +IL   L  +FP+Y+  +S R+F +      N N L
Sbjct: 157 MLHTTLRNASGWPDPEHLTTARDLSILARRLISDFPEYFPIYSEREFVFNGIRQGNRNPL 216

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L  +   DG+KTG+T  +G+ +V +++  +  I+ V+ G+ + +ER +++  L+     +
Sbjct: 217 LYGVSGADGLKTGHTEAAGYGLVGTVKRGERRIIMVINGLKSMKERSEESARLMEWAFRE 276


>gi|331085114|ref|ZP_08334200.1| hypothetical protein HMPREF0987_00503 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407897|gb|EGG87387.1| hypothetical protein HMPREF0987_00503 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 397

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 80/287 (27%), Positives = 140/287 (48%), Gaps = 11/287 (3%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+++++ +  ++   KQ +E R PAS+TK+MT+ +I + ++  K+ L  ++ VS+ AA
Sbjct: 44  AQSAVLMEASTGKIIYEKQKEEERPPASVTKVMTMLLILDAVEDGKIKLEDEVTVSEYAA 103

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S+++L+     T +  +  +   SAND   A  E+ISGSE+ F   M+ +AK +GM
Sbjct: 104 SMGGSQVFLEPGEVQTVDTMLKCIAVASANDACVAMSEYISGSEEAFVEQMNVRAKGLGM 163

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-------- 223
           ++T + N +GL     +TTA D A++   L    P+  KY  I      ++         
Sbjct: 164 EHTHFVNCNGLDADGHLTTAYDIALMSRELITKHPEIEKYSMIWMENITHKTNKGTSEFG 223

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           ++N NKL+       G+KTG T  + F I  + R     ++AV+M  P S+ R + A  L
Sbjct: 224 LSNTNKLVRHYPYATGLKTGSTSKAKFCISATARKDGMDLIAVIMAAPDSKMRVKDATTL 283

Query: 284 ITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
           +     K T        K  L +  +      K      + F+ +D 
Sbjct: 284 LNYGFGKCT--KYVDKEKGGLKAVKVDGGTKEKVRIEPEAIFQYVDT 328


>gi|281500691|pdb|3A3J|A Chain A, Crystal Structures Of Penicillin Binding Protein 5 From
           Haemophilus Influenzae
          Length = 344

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 79/256 (30%), Positives = 138/256 (53%), Gaps = 7/256 (2%)

Query: 53  KYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + +++D N   +      D+ +YPASLTKMMT Y++   L+  K+H    + + ++A 
Sbjct: 9   AQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAW 68

Query: 112 TQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            +N    SK++L   T  +       +I  S ND + A  E ISG+   F   M+   ++
Sbjct: 69  GRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQ 128

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
            G++NT +    GL D NQ ++ARD AI+G  + ++ P+ YK +S + F +      N N
Sbjct: 129 FGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQPNRN 188

Query: 229 KLLN-KMHNIDGIKTGYTRNSGFNIVTSL-RYKDDPIVAVVMGMPTSQERDQKALELITS 286
            LL  K  N+DG+KTG+T  +G+N+V S     +  +++VVMG+PT + R+ ++ +L+  
Sbjct: 189 GLLWDKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLLQW 248

Query: 287 FL-EKKTLKHQQTHRK 301
                +T K  +  ++
Sbjct: 249 GFANFETFKTLEAGKE 264


>gi|148825690|ref|YP_001290443.1| hypothetical protein CGSHiEE_03165 [Haemophilus influenzae PittEE]
 gi|148715850|gb|ABQ98060.1| hypothetical protein CGSHiEE_03165 [Haemophilus influenzae PittEE]
          Length = 367

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 79/256 (30%), Positives = 138/256 (53%), Gaps = 7/256 (2%)

Query: 53  KYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + +++D N   +      D+ +YPASLTKMMT Y++   L+  K+H    + + ++A 
Sbjct: 12  AQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAW 71

Query: 112 TQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            +N    SK++L   T  +       +I  S ND + A  E ISG+   F   M+   ++
Sbjct: 72  GRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQ 131

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
            G++NT +    GL D NQ ++ARD AI+G  + ++ P+ YK +S + F +      N N
Sbjct: 132 FGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQANRN 191

Query: 229 KLLN-KMHNIDGIKTGYTRNSGFNIVTSL-RYKDDPIVAVVMGMPTSQERDQKALELITS 286
            LL  K  N+DG+KTG+T  +G+N+V S     +  +++VVMG+PT + R+ ++ +L+  
Sbjct: 192 GLLWDKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKKLLQW 251

Query: 287 FL-EKKTLKHQQTHRK 301
                +T K  +  ++
Sbjct: 252 GFANFETFKTLEAGKE 267


>gi|332160854|ref|YP_004297431.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318604756|emb|CBY26254.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665084|gb|ADZ41728.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330863383|emb|CBX73505.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia enterocolitica
           W22703]
          Length = 403

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 77/256 (30%), Positives = 133/256 (51%), Gaps = 11/256 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   + ++ID N  ++      D  R PASLTKMMT Y+I + +++ K+ 
Sbjct: 37  MIPGVPQIDAE---AYVLIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGKIG 93

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V K A        +  S ++LK        +    +  +S ND   A  ++++G
Sbjct: 94  PEDMVTVGKDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+N  K +G+QNT +K   GL  + Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDSFVNLMNNYVKALGLQNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAIYK 213

Query: 214 IRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F + N    N N LL     N+DGIKTG+T  +G+N+V S       +++ V+G  T
Sbjct: 214 EKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTDAAGYNLVASATDGQMRLISAVLGGHT 273

Query: 273 SQERDQKALELITSFL 288
            + R+ ++ +L+T   
Sbjct: 274 YKGRETESKKLLTWGF 289


>gi|123443220|ref|YP_001007194.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122090181|emb|CAL13044.1| putative penicillin-binding protein 5 [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 403

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 77/256 (30%), Positives = 133/256 (51%), Gaps = 11/256 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   + ++ID N  ++      D  R PASLTKMMT Y+I + +++ K+ 
Sbjct: 37  MIPGVPQIDAE---AYVLIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGKIG 93

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V K A        +  S ++LK        +    +  +S ND   A  ++++G
Sbjct: 94  PEDMVTVGKDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM+N  K +G+QNT +K   GL  + Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDSFVNLMNNYVKALGLQNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAIYK 213

Query: 214 IRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F + N    N N LL     N+DGIKTG+T  +G+N+V S       +++ V+G  T
Sbjct: 214 EKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTDAAGYNLVASATDGQMRLISAVLGGHT 273

Query: 273 SQERDQKALELITSFL 288
            + R+ ++ +L+T   
Sbjct: 274 YKGRETESKKLLTWGF 289


>gi|113866332|ref|YP_724821.1| D-alanyl-D-alanine carboxypeptidase (serine-type) [Ralstonia
           eutropha H16]
 gi|113525108|emb|CAJ91453.1| D-Alanyl-D-alanine carboxypeptidase (serine-type) [Ralstonia
           eutropha H16]
          Length = 399

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 82/277 (29%), Positives = 147/277 (53%), Gaps = 13/277 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
            +      S ++ DV   Q    +  D    PASLTK+MT Y+ FE L+ K+L L+  + 
Sbjct: 37  PMPQVAAKSWMLYDVTSGQALASQNADARIEPASLTKLMTAYLAFEALKEKRLTLDQAVV 96

Query: 106 VSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            +        + S+++++     T +  +L LI +S ND + A  E + GSE+ F  +M+
Sbjct: 97  PTSVVLKVKSDESRMFIEPNKPVTVQDLLLGLIVQSGNDAALALAEAVGGSEEGFVAMMN 156

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI 223
            +A+++GM+NT + N  G+ D N  TTA D A L   L K+FP+YY  +S ++F Y    
Sbjct: 157 REAQRMGMKNTHFTNTDGIPDPNHYTTAVDLATLTTRLIKDFPEYYAMYSQKEFTYNKIR 216

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMPTSQER 276
             N N+LL     +DG+KTG+T+++G+ +++S +            ++++V+G  T Q R
Sbjct: 217 QPNRNRLLYIDPTVDGVKTGHTKSAGYCLISSAKRPLANVPDGSRRLISIVIGTTTEQVR 276

Query: 277 DQKALELITSFLE-KKTLKHQQTHRKDNLSSTSLKKS 312
            Q++L+++    +   TL+     +   L++  + K 
Sbjct: 277 TQESLKILNYGFQFFDTLRLYD--KGQVLATPDIYKG 311


>gi|262395893|ref|YP_003287746.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25]
 gi|262339487|gb|ACY53281.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25]
          Length = 389

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 74/267 (27%), Positives = 136/267 (50%), Gaps = 8/267 (2%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMT 85
               +  + + +  ++  A EL ++     +++D +  ++   +    R  PASLTK+MT
Sbjct: 14  GFAAVSSLAYAAPTVVPNAPELSSR---GYVLMDFHTGKVLVERDAHKRLNPASLTKLMT 70

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSAND 142
            Y+  + + +  + L+ ++ +S+ A  +N    SK++++  T  +       L+ +S ND
Sbjct: 71  AYVAGQEINAGNITLDDEVVISRNAWAKNFPDSSKMFIEVNTSVSLSDLYRGLVVQSGND 130

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            S A  E ++GSE  F  LM++ A K+ + NT + N  GL      +T  D A LG  + 
Sbjct: 131 ASVAIAEHVAGSESGFVSLMNSWAAKLELNNTAFTNPHGLDSDGLYSTPYDIAKLGQAII 190

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           ++ P  Y  +S   F Y      N N LL  +  N+DG+KTGYT  +G+++ TS    D 
Sbjct: 191 RDLPDIYPLYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYSLATSATQGDM 250

Query: 262 PIVAVVMGMPTSQERDQKALELITSFL 288
            ++AVVMG  +   R+ ++ +L++   
Sbjct: 251 RLIAVVMGAKSENIRESESKQLLSYGF 277


>gi|319405849|emb|CBI79481.1| Penicillin-binding protein [Bartonella sp. AR 15-3]
          Length = 449

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 114/272 (41%), Positives = 167/272 (61%), Gaps = 1/272 (0%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASL 80
           ++  + + +   +L +S        +     KY++IVID N  +          RYPASL
Sbjct: 9   VHCYKKVGISLTLLVISHSWAVATPKEAHPDKYAAIVIDANTGKTLFQANAALKRYPASL 68

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           TKMMT+Y+IFE +++ ++  NT IP+S  AAT+ P+K+ +K     + E    ALIT+SA
Sbjct: 69  TKMMTVYMIFEAIKNGRVTPNTPIPISNYAATRPPTKIGIKAGQTISIEAATKALITKSA 128

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           NDV+ A GE++ GSE+KFA +M+ KA+K+GM+NT + NASGL D    +TA+D A L + 
Sbjct: 129 NDVAAAIGEYLGGSEQKFAQMMTIKARKLGMKNTRFANASGLPDTRNYSTAQDIATLALA 188

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           LRK+FP+ YK F    F +R + I NHN L+  +  +DGIKTGYT+ SG N+ TS+R   
Sbjct: 189 LRKHFPEQYKLFKTTHFTFRGQTINNHNTLIKTIKGVDGIKTGYTQMSGSNLATSMRIDG 248

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
             IVAVVMG  +S  R+     L+  +L K +
Sbjct: 249 RSIVAVVMGGKSSTTRNIHMANLLKQYLPKTS 280


>gi|126732363|ref|ZP_01748163.1| D-alanyl-D-alanine carboxypeptidase family protein [Sagittula
           stellata E-37]
 gi|126707232|gb|EBA06298.1| D-alanyl-D-alanine carboxypeptidase family protein [Sagittula
           stellata E-37]
          Length = 479

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 98/252 (38%), Positives = 144/252 (57%), Gaps = 3/252 (1%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           M  +   + A P Y+++V+D    ++   +  D   +PASLTKMMTLYI+FE +Q+ +L 
Sbjct: 1   MALLPMAVKAAP-YAAMVMDARTGKVLHAQNADTRLHPASLTKMMTLYIVFEAVQNGELT 59

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           ++T + VSK AA + PSKL L+E         + A   +SAND +TA GE + GSE  FA
Sbjct: 60  MDTLVTVSKNAAAEPPSKLGLREGQKIKLRYLVRAAAVKSANDAATAIGEAVEGSEAAFA 119

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             M+  AK IGM  T +KNA GL  +  ++TARD  ILG  +  ++P+YY  FS      
Sbjct: 120 RRMNRTAKAIGMTRTTFKNAHGLTAEGHLSTARDMTILGRHVIYDYPEYYNLFSRVTADA 179

Query: 220 RNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
             R +++ N +LL      DGIKTGYTR +GFN+V S     + ++A V G  ++  R+ 
Sbjct: 180 GVRTVSHTNRRLLQSYKGADGIKTGYTRAAGFNLVASAERGRERVIATVFGGQSTASRNA 239

Query: 279 KALELITSFLEK 290
           K  EL+     +
Sbjct: 240 KVAELLDLGFRE 251


>gi|261251421|ref|ZP_05943995.1| D-alanyl-D-alanine carboxypeptidase [Vibrio orientalis CIP 102891]
 gi|260938294|gb|EEX94282.1| D-alanyl-D-alanine carboxypeptidase [Vibrio orientalis CIP 102891]
          Length = 388

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 77/266 (28%), Positives = 139/266 (52%), Gaps = 8/266 (3%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRY-PASLTKMMTL 86
           +   + LS  + +  + +   P   +   I++D +  ++   K  E +  PASLTK+MT 
Sbjct: 11  LLSTISLSFGVTAAPTIIPDPPALGAKGYILMDYHTGEVLVQKNSEKKLNPASLTKLMTA 70

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDV 143
           Y+  + + S  + L+ Q+ +S+ A  +N    SK++++  T          LI +S ND 
Sbjct: 71  YVAGQEVNSGNIALDDQVRISRNAWAKNFPDSSKMFIEVGTDVQLMDLYRGLIVQSGNDA 130

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           S A  E ++GSE  F  LM++ ++K+G+ NT Y N  GL      +T  D A+L   + +
Sbjct: 131 SVAIAEHVAGSEDAFVSLMNSWSQKLGLANTSYTNPHGLDSDGLYSTPYDIALLSQAIIR 190

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           + P  Y  +S   + Y      N N LL  +  N+DG+KTGYT  +G+++ TS    D  
Sbjct: 191 DLPDIYPLYSETAYTYNGITQYNRNGLLRDRSLNVDGMKTGYTSGAGYSLATSATSGDMR 250

Query: 263 IVAVVMGMPTSQERDQKALELITSFL 288
           +++VVMG  +++ R+ ++ +L++   
Sbjct: 251 LISVVMGSSSAKSRESESKQLLSYGF 276


>gi|258541378|ref|YP_003186811.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256632456|dbj|BAH98431.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256635513|dbj|BAI01482.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256638568|dbj|BAI04530.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256641622|dbj|BAI07577.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256644677|dbj|BAI10625.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256647732|dbj|BAI13673.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256650785|dbj|BAI16719.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256653776|dbj|BAI19703.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 382

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 109/265 (41%), Positives = 158/265 (59%), Gaps = 4/265 (1%)

Query: 29  QLMGKILFLSIIMISMASELHAKPK--YSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMT 85
           + +G +  L++   +   + HA+     SSIV+D     +      +  RYPASLTK+MT
Sbjct: 25  KWVGLLAGLAVGTTATYGKAHAQYAGQLSSIVVDARTGAVLSQDDPDLRRYPASLTKLMT 84

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           LY+ F  L++  + L+  +PVS  A+T  PSKL L   ++ T EQ ILAL+T+SAND + 
Sbjct: 85  LYMTFNALRAGAISLDQAVPVSIHASTMEPSKLGLVPGSHLTVEQAILALVTKSANDAAC 144

Query: 146 AFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
           A GE I G SE +FA +M+ +A  +GM NT ++NASGL D +Q+TTARD + LG  L  +
Sbjct: 145 ALGELIGGGSEPQFAAMMTQQAHYLGMSNTTFRNASGLPDPDQMTTARDLSTLGRRLISD 204

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           FP+YY YFS   F +  RII NHN +L      DG+KTGYT+ +G N+VTS    +  +V
Sbjct: 205 FPEYYHYFSTPYFSFHRRIIPNHNPMLKVYAGADGMKTGYTQEAGRNLVTSAIRDNVRLV 264

Query: 265 AVVMGMPTSQERDQKALELITSFLE 289
            VVMG  ++ +R       +    +
Sbjct: 265 GVVMGASSNTQRSLVMANQLDRGFD 289


>gi|160895834|ref|YP_001561416.1| serine-type D-Ala-D-Ala carboxypeptidase [Delftia acidovorans
           SPH-1]
 gi|160361418|gb|ABX33031.1| Serine-type D-Ala-D-Ala carboxypeptidase [Delftia acidovorans
           SPH-1]
          Length = 389

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 85/258 (32%), Positives = 144/258 (55%), Gaps = 12/258 (4%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           I      E+ A+   + +++DV  NQ+ G K  D P   ASLTK+MT Y++F+ L++KK+
Sbjct: 26  ITPPQPPEIAAR---NYLLVDVTANQVLGAKDIDAPIEQASLTKLMTGYLVFDALRAKKI 82

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            L  ++PVS+ A     S++++  K     +  I  +I +S ND + A  E + GS + F
Sbjct: 83  TLEQRLPVSERAWKMPGSRMFIDPKMQVPVDDLIKGMIVQSGNDATMALAEGVGGSAENF 142

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             LM+ +AK +GM+NT YKN  GL +   +TTARD +IL   L ++FP+Y  Y+S +K+ 
Sbjct: 143 VRLMNEQAKALGMKNTSYKNPEGLTEPGHLTTARDLSILAQRLMQDFPEYMHYYSTKKYF 202

Query: 219 YRNRII---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK-----DDPIVAVVMGM 270
           Y        TN N LL +   +DG+KTG+T  +G+ +V + +          ++++V+G 
Sbjct: 203 YPGTPASNGTNRNSLLFRDPTVDGLKTGHTAAAGYCLVATAKRDLPNVGSRRLISIVLGA 262

Query: 271 PTSQERDQKALELITSFL 288
            +   R  ++ +L+    
Sbjct: 263 ASENARANESQKLLNWGY 280


>gi|116252402|ref|YP_768240.1| D-alanyl-D-alanine carboxypeptidase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257050|emb|CAK08144.1| putative D-alanyl-D-alanine carboxypeptidase [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 291

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 102/285 (35%), Positives = 162/285 (56%), Gaps = 3/285 (1%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTK 82
           + +    +      S  ++   +++ A    +S V+DV   Q+  G  QD+  YPASLTK
Sbjct: 1   MTKTTSRLLATALSSFFLMGAFTQVQA--GQASFVVDVQSGQVLEGSNQDDLNYPASLTK 58

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           MMTLY+ FE L   +L+ + ++ +S+ A ++ P KL +      T  + +  ++  SAND
Sbjct: 59  MMTLYLAFEALHDGRLNWDQKLTMSENAESKEPFKLAVGAGRKVTLREAVEGIVVLSAND 118

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E + G+E+ FA  M++KA ++GM++T+++N SGL D  Q+TTARD A LG+ L 
Sbjct: 119 AAVAIAEQLGGTEQVFAKAMTDKAHQLGMKDTVFRNPSGLPDPEQVTTARDMATLGVSLM 178

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           ++FP+ +K FS+R F++R   +  HN L+ +   +DGIKTGYT  SG+N+VTS       
Sbjct: 179 RDFPEEFKLFSMRGFQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKDGRR 238

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSST 307
           +V VVMG  T+  RD K   L+ S L   +     T       +T
Sbjct: 239 VVGVVMGEKTASIRDDKMASLLDSTLSPSSTATASTTPGSQPGAT 283


>gi|120609035|ref|YP_968713.1| penicillin-binding protein 6 [Acidovorax citrulli AAC00-1]
 gi|120587499|gb|ABM30939.1| penicillin-binding protein 6 [Acidovorax citrulli AAC00-1]
          Length = 393

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 138/253 (54%), Gaps = 9/253 (3%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A +       + +++DV   Q+   K  D P   ASLTK+MT Y++F+ L++KK+ L  +
Sbjct: 32  APQPPEIAARNYLLLDVTAGQVLAAKDIDAPVEQASLTKLMTGYLVFDALRAKKITLEQR 91

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           +PVS+ A     S++++  K     E  I  +I +S ND + A  E + G+ + F  LM+
Sbjct: 92  LPVSERAWKMPGSRMFIDPKMQVPVEDLIKGMIVQSGNDATMALAEGVGGTAENFVKLMN 151

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI 223
           ++A+ +GM+NT YKN  GL +    TTARD ++L   L K+FP+Y  Y+S + + Y    
Sbjct: 152 DQARALGMKNTAYKNPEGLTEPGHTTTARDLSVLATRLMKDFPEYMHYYSTKHYAYPGTP 211

Query: 224 I---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK-----DDPIVAVVMGMPTSQE 275
               TN N LL +   +DG+KTG+T  +G+ +V + +          ++++V+G  +   
Sbjct: 212 PSNGTNRNALLFRDPTVDGLKTGHTAAAGYCLVATSKRDFPNIGQRRLLSIVLGAASESA 271

Query: 276 RDQKALELITSFL 288
           R  ++ +L+    
Sbjct: 272 RANESQKLLNWGY 284


>gi|288549826|ref|ZP_05968319.2| D-alanyl-D-alanine carboxypeptidase DacA [Enterobacter cancerogenus
           ATCC 35316]
 gi|288317555|gb|EFC56493.1| D-alanyl-D-alanine carboxypeptidase DacA [Enterobacter cancerogenus
           ATCC 35316]
          Length = 347

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 119/240 (49%), Gaps = 8/240 (3%)

Query: 59  IDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN--- 114
           +D    Q+     + + R PASLTK+MT Y++   + S ++  +  + V + A  +    
Sbjct: 1   MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKGNPV 60

Query: 115 ---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S ++LK     T       LI  S ND   A  + ++G + +F  +M++  +K+ +
Sbjct: 61  FDGSSLMFLKPGDRVTVRDLSRGLIVDSGNDACVALADHVAGGQPQFVNMMNDYVQKLNL 120

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL
Sbjct: 121 RDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180

Query: 232 N-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
             K  N+DG+KTG+T  +GFN++ S       ++AVVMG  + + R+ +A +L+    + 
Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSPKGREDQARKLLHWGQQN 240


>gi|149203254|ref|ZP_01880224.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius sp.
           TM1035]
 gi|149143087|gb|EDM31126.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius sp.
           TM1035]
          Length = 465

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 94/254 (37%), Positives = 144/254 (56%), Gaps = 3/254 (1%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +++ +     A P Y+++V+D    ++      D   +PASLTKMMTLY++FE +++ ++
Sbjct: 1   MLVIVPLSAVAAP-YAALVMDARNGEVLYSNNADTRLHPASLTKMMTLYVVFEAIENGEI 59

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            L+ ++ +SK AA++ PSKL ++  +       I A   +SAND +TA GE I GSE +F
Sbjct: 60  GLDDKVVISKHAASEPPSKLGVRAGSSIALRYLIRAAAVKSANDAATALGEAIEGSEAQF 119

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           A  M+  A+ +GM  T +KNA GL +   ++TARD  ILG  L  +FPQYY  FS     
Sbjct: 120 ARRMNRTAEALGMTRTTFKNAHGLTENGHLSTARDMTILGRHLFYDFPQYYNLFSRITTD 179

Query: 219 YRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
                +++ N +LL      DGIKTGYTR +GFN+  S     + I+A V G  ++  R+
Sbjct: 180 AGVTSVSHTNRRLLEAYRGADGIKTGYTRAAGFNLTASAERNGERIIATVFGGQSTASRN 239

Query: 278 QKALELITSFLEKK 291
            K  EL+     K 
Sbjct: 240 AKVAELLDLGFNKA 253


>gi|154500121|ref|ZP_02038159.1| hypothetical protein BACCAP_03781 [Bacteroides capillosus ATCC
           29799]
 gi|150271211|gb|EDM98480.1| hypothetical protein BACCAP_03781 [Bacteroides capillosus ATCC
           29799]
          Length = 383

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 126/242 (52%), Gaps = 3/242 (1%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++++++     +   +   +   PAS+TK+MTL ++ E + S ++ L+  + +S  A + 
Sbjct: 37  AAVLMEKETGTILYEQNSHDKLEPASVTKIMTLLLVMEAVDSGRISLDQTVTISAHAVSM 96

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++LKE    T    + A+   SAND + A  E ++GSE+ F  LM+ +A ++GM +
Sbjct: 97  GGSQIWLKEGEQMTVHDLLKAVAVVSANDGAVALAELVAGSEEGFVALMNQRAAELGMAD 156

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIITNHNKLL 231
           T + N +GL     +T+A D A++   L  N P   +Y +I     R+    +TN NKL+
Sbjct: 157 TTFVNCTGLPAAGHLTSAHDIALMSRELILNHPSIREYTTIWMDSLRDGAFQLTNTNKLI 216

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
                  G+KTG T ++ + +  +       ++AVV+  PTSQ+R   A  L+       
Sbjct: 217 RFYDGATGLKTGSTDSALYCLSATAERGGMELIAVVLKSPTSQDRFDAARALLDYGFANY 276

Query: 292 TL 293
           TL
Sbjct: 277 TL 278


>gi|327190645|gb|EGE57733.1| putative D-alanyl-D-alanine carboxypeptidase protein [Rhizobium
           etli CNPAF512]
          Length = 290

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 105/279 (37%), Positives = 162/279 (58%), Gaps = 4/279 (1%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLY 87
           +L    L+ ++++ + A    A+   +S V+DV   Q+     QD+  YPASLTKMMTLY
Sbjct: 7   RLRATALWSALLISAFA---QAEAGQASFVVDVRSGQVLEASNQDDLNYPASLTKMMTLY 63

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + FE L   +L    ++ +S+ A ++ P KL +      T  + + +++  SAND + A 
Sbjct: 64  LAFEALHQGRLTWEQKLTMSENAESKEPFKLAIGAGRQVTLREAVESIVVLSANDSAVAI 123

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E + GSE+ FA  M++KA ++GM++T++KN SGL D  Q+TTARD A LG+ L ++FP+
Sbjct: 124 AEQLGGSEQAFARAMTDKAHQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRDFPE 183

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            +K FS+R F++R   +  HN L+ +   +DGIKTGYT  SG+N+VTS       +V VV
Sbjct: 184 EFKLFSMRGFQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKGGRRVVGVV 243

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSS 306
           MG  T+  RD K   L+ S L   T     T      ++
Sbjct: 244 MGEKTASIRDDKMAGLLDSTLSPSTATAYTTPGTQPGAT 282


>gi|114707363|ref|ZP_01440260.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506]
 gi|114537244|gb|EAU40371.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506]
          Length = 299

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 99/287 (34%), Positives = 166/287 (57%), Gaps = 3/287 (1%)

Query: 4   QKIQSSAKKTFLTY-PYGSIYIQRNIQLMGKILF-LSIIMISMASELHAKPKYSSIVIDV 61
              +  + +    +   G +   ++ QL  + L   S  +  +A     +  +S++V+D 
Sbjct: 8   SSFKRLSGRLLAAFLSLGMLAGCQSSQLTAEGLMPASQPVAPIAFSQIERRGHSALVVDF 67

Query: 62  NKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
              +     + DE RYPASLTKMMTLY++FE +++ +L   TQ  VS+ AA++ PSKL L
Sbjct: 68  GTGRTLYEDQADELRYPASLTKMMTLYLLFEAVENGQLSRETQFIVSENAASKPPSKLGL 127

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           K          + AL  +SANDV+T   E ++G+E+ FA +M+ KA+ +GM +T + NAS
Sbjct: 128 KPGESIPVSLAMTALAVKSANDVATVVAENMAGTEEAFAAVMTRKARSLGMNHTQFANAS 187

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI 240
           GL +  Q+++ARD AILG  +   +P Y + F+   ++Y  R   + NKLL K+  +DG+
Sbjct: 188 GLPNPQQVSSARDMAILGRAIMSRYPSYAQLFATPSYQYNGRTYNSTNKLLGKVAGVDGM 247

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           KTGY  ++G ++V ++R     ++ VV+G  +S++RD +  ELI  +
Sbjct: 248 KTGYINDAGSHLVATVRRNGRRLIVVVLGGDSSRKRDAEVTELIERY 294


>gi|154686590|ref|YP_001421751.1| DacF [Bacillus amyloliquefaciens FZB42]
 gi|63146679|emb|CAG28930.1| penicillin binding protein [Bacillus amyloliquefaciens FZB42]
 gi|154352441|gb|ABS74520.1| DacF [Bacillus amyloliquefaciens FZB42]
          Length = 389

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 81/323 (25%), Positives = 163/323 (50%), Gaps = 20/323 (6%)

Query: 28  IQLMGKILFLSIIMISMASELHAKP-----------KYSSIVIDVNKNQMTGFKQD-EPR 75
           ++ +   L + I++ + A    AKP             S+++I+ +   +   K   E  
Sbjct: 1   MKRLISTLLIGILLTASAPSAFAKPDGKHTSELAHEAKSAVLIERDTGSILYNKNSRERL 60

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
            PAS+TK+MT+ +I E L   K+ ++ ++  S+ AA+   S+++L+     T ++ +  +
Sbjct: 61  APASMTKIMTMLLIMEALDKGKIKMSDKVRTSEHAASMGGSQIFLEPGEEMTVKEMLKGI 120

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
              S ND S A  E+I+GSE+ F   M+ KAK++G+++T +KN +GL +K+  ++A D A
Sbjct: 121 AIASGNDASVAMAEYIAGSEEDFVSRMNKKAKELGLKDTSFKNPTGLPEKDHYSSAYDMA 180

Query: 196 ILGILLRKNFPQYYKYFSI-----RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
            +   L K + +  ++        R+   +   + N N+L+     +DG+KTG+T  + +
Sbjct: 181 KMAKELLK-YDKITQFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGFTGEAKY 239

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLK 310
            +  + +  +  ++AVV G  T +ER+ +  +++     +   K    +++D +  T   
Sbjct: 240 CLTATAKKGNMRVIAVVFGASTPKERNAQVTKMLDYAFSQ--FKTHPLYKRDQIVGTVKV 297

Query: 311 KSLMIKKLKRTYSQFKKIDAKAH 333
           K    K +K T S+   + AK  
Sbjct: 298 KKGKQKLIKLTTSEPISLLAKKG 320


>gi|313901752|ref|ZP_07835179.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467988|gb|EFR63475.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 405

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 79/269 (29%), Positives = 139/269 (51%), Gaps = 10/269 (3%)

Query: 53  KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++++D    Q     K DEP  PASL K+MTL ++F  L+  ++ L+ ++PVS+ A 
Sbjct: 47  ARSALLVDATTGQELFAQKADEPIPPASLAKIMTLDLVFHALEQGQITLDQEVPVSEAAW 106

Query: 112 T-------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
                     PS ++L+       E  I  +   S ND ST   E ++GSE+ F   M+ 
Sbjct: 107 RLSVQAGLGGPSAMFLEVGERVRIEDLIRGVAIASGNDASTVLAEAVAGSEEAFVQRMNQ 166

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-I 223
            A ++GM+++++ N+ GL    Q  TARD A L + + K  P   KY S++ F +++   
Sbjct: 167 HAAELGMKDSVFSNSHGLPGGEQHVTARDMARLALHVLKEHPGILKYTSMKYFEWKDFAA 226

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
             N+N+LL +   +DG+KTG+   +G+++V + R  D  +V+VVMG  +   R  ++  L
Sbjct: 227 QPNYNRLLFRDPRVDGLKTGHLSEAGYHLVATAREGDRRLVSVVMGAASDALRVGESQRL 286

Query: 284 ITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           +    ++ T   +    ++      + K 
Sbjct: 287 LDYGFQQFT-NTRVAFGENGRQVVPVFKG 314


>gi|269104718|ref|ZP_06157414.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161358|gb|EEZ39855.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 414

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 68/271 (25%), Positives = 141/271 (52%), Gaps = 18/271 (6%)

Query: 33  KILFLSIIMISM----------ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLT 81
           +++F S ++I              ++ AK   + +++  N  Q+       +P  PASLT
Sbjct: 11  RLIFASCLVIPSFYSHSAYLLDPPDIDAK---AWVLMSYNTGQIIAGDNLHKPLAPASLT 67

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITR 138
           K+MT +++ E +++  + L+  + +S+ A  +     SK++L      + E  +  +I  
Sbjct: 68  KIMTTFVVGEEIKAGNIQLSDMVTISENAWGKKFPGSSKMFLNVGDSVSVEDLLRGVIVS 127

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND + A  E ++G +  F  +M+  A++ GM+++ + N  GL   +Q T+A D A+L 
Sbjct: 128 SGNDATVALAEHVAGHQSAFIKMMNQYAERYGMKDSYFSNPHGLDADDQTTSAYDMALLT 187

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLR 257
               +  P  Y     + F + +    N N LL  +  ++DG+KTGYT+ +G+++V+S +
Sbjct: 188 RAFIQEVPDIYDMHKEKSFTFGDIKQGNRNALLWDETLHVDGVKTGYTKQAGYSLVSSAK 247

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFL 288
             +  ++AVV+G  +++ R  ++ +L++   
Sbjct: 248 NGEQRLIAVVLGTKSAKARRLESKQLLSWGF 278


>gi|121597580|ref|YP_989692.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei SAVP1]
 gi|167002262|ref|ZP_02268052.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei PRL-20]
 gi|121225378|gb|ABM48909.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei SAVP1]
 gi|243062001|gb|EES44187.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei PRL-20]
          Length = 511

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 77/262 (29%), Positives = 135/262 (51%), Gaps = 12/262 (4%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S +V+D +  +  G    D  R PASLTK+MT Y+ F+ L+   L  +  + V+      
Sbjct: 58  SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERAALRWDDTVTVAADDIAS 117

Query: 113 --QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             ++ +++YL           +  LI  SAND +    + I GS   FA +M++ A+++G
Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ + + SG+   N  +TA D +IL   L ++FP +Y + S R F Y     TN N+L
Sbjct: 178 MRDSHFVSPSGITTPNHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRY--KD----DPIVAVVMGMPTSQERDQKALELI 284
           L    ++DG+KTG+T  +G+ +V + +           ++AV++G PT ++R   A  L+
Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALL 297

Query: 285 TSFLEKKTLKHQQTHRKDNLSS 306
                  +L     HR+ +L+ 
Sbjct: 298 DQGF--ASLGADAPHRRSSLAC 317


>gi|300926504|ref|ZP_07142297.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           182-1]
 gi|300417465|gb|EFK00776.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           182-1]
          Length = 347

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 126/242 (52%), Gaps = 8/242 (3%)

Query: 59  IDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---- 113
           +D    Q+     + + R PASLTK+MT Y++   + S ++  +  + V + A  +    
Sbjct: 1   MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60

Query: 114 --NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S ++LKE    +       LI  S ND   A  ++I+G +++F  +M+N A+K+ +
Sbjct: 61  FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL
Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180

Query: 232 N-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
             K  N+DG+KTG+T  +GFN++ S       ++AV+MG  +++ R+++A +L+    + 
Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQHRLIAVIMGADSAKGREEEARKLLRWGQQN 240

Query: 291 KT 292
            T
Sbjct: 241 FT 242


>gi|170748801|ref|YP_001755061.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655323|gb|ACB24378.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 509

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 88/265 (33%), Positives = 148/265 (55%), Gaps = 5/265 (1%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMT 85
            +  +  +L   ++ I  A+ +        +V DV+  ++   +   +P YPAS+TK+MT
Sbjct: 12  GLAALTGLLGAGLVGIGAANAVTVP----ILVADVDSGKVIYAQAPTDPWYPASITKLMT 67

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
            Y+  + ++  K+ L++ I +S  AA + PSK+  K  T  T +  +  ++ +SANDV+ 
Sbjct: 68  TYVALDLVRQGKVSLDSMITISAAAAAEPPSKMGFKPGTQLTLDNALKIIMVKSANDVAY 127

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A GE + GS + FA LM+  A++IGM ++ + N +GL D  Q T+ARD A+L   L ++F
Sbjct: 128 AIGESLGGSVENFAALMNETAQRIGMHDSRWYNPNGLPDPRQWTSARDMAVLARALIRDF 187

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           P  +  FSI   ++   ++ NHN LL +    DG+KTG+  + GFN+V +       IV 
Sbjct: 188 PDSHDLFSISAIQFGRAVMANHNGLLGRYPGTDGMKTGFICSGGFNVVATATRNGRRIVT 247

Query: 266 VVMGMPTSQERDQKALELITSFLEK 290
           +VMG P+ +ERD K  +L      +
Sbjct: 248 IVMGQPSPRERDVKTADLFDYAFGQ 272


>gi|149201815|ref|ZP_01878789.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius sp. TM1035]
 gi|149144863|gb|EDM32892.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius sp. TM1035]
          Length = 387

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 87/284 (30%), Positives = 154/284 (54%), Gaps = 10/284 (3%)

Query: 26  RNIQ-LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           R I+ +    L L + + + A E  AK   ++ V+DV    +   K  D P  PAS++K+
Sbjct: 2   RLIRHIAAATLCLGVALPAQAFETSAK---AAYVMDVTTGTVLLDKNADTPMPPASMSKL 58

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MTLY+ FE ++S +L L+ ++PVS+ A +   S ++L        E  +  +I  S ND 
Sbjct: 59  MTLYVAFEAVRSGRLTLDERLPVSQHAMSYGGSTMFLDTTDRVRVEDLLRGIIVLSGNDA 118

Query: 144 STAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
                E +S  G+E  FA  M+ +A+++GM N+I++NASG   +  + + RD A+L   +
Sbjct: 119 CAVIAEALSPDGTEAGFARFMTQRAQQMGMTNSIFRNASGWPAEGHVMSMRDLALLARHI 178

Query: 202 RKNFPQYYKYFSIRKFRYRNR---IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
            ++FP++Y  F+  +FR+  R    I+N N LL      DG+KTG+T  +GF +  S + 
Sbjct: 179 IEDFPEFYPMFAETEFRFDGRAPSNISNRNPLLGLGIGADGLKTGHTEQAGFGLTGSAKQ 238

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKD 302
            +  +V V+ G+ T+Q+R +++  ++     +   K   T  ++
Sbjct: 239 GERRVVFVISGLATAQDRARESESIVNWAFRQFAEKSVLTAGEE 282


>gi|218461037|ref|ZP_03501128.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli Kim 5]
          Length = 294

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 103/281 (36%), Positives = 164/281 (58%), Gaps = 4/281 (1%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLY 87
           +L+   L  ++++ +    + A+   +S V+DV   Q+     QD+  YPASLTKMMTLY
Sbjct: 12  RLLASALPFALLVGAF---IPAEAGQASFVLDVQSGQVLEASNQDDLNYPASLTKMMTLY 68

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + FE L   +L  + ++ +S+ A ++ P KL +      T  + + +++  SAND + A 
Sbjct: 69  LAFEALHDGRLTWDQKLTMSENAESKEPFKLAVGAGRKVTLREAVESIVVLSANDSAVAI 128

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E + GSE+ FA  M++KA+++GM++T++KN SGL D  Q+TTARD A LG+ L ++FP+
Sbjct: 129 AEQLGGSEQAFARTMTDKARQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRDFPE 188

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            +K FS+R F++R   +  HN L+ +   +DGIKTGYT  SG+N+VTS       +V VV
Sbjct: 189 EFKLFSMRGFQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKGGRRVVGVV 248

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
           MG  T+  RD K   L+ S L      +     +   + T 
Sbjct: 249 MGEKTAGLRDDKMAGLLDSTLSSTATAYTTPGSQPGATMTD 289


>gi|312877868|ref|ZP_07737815.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795372|gb|EFR11754.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 386

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 80/280 (28%), Positives = 140/280 (50%), Gaps = 14/280 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I++D +  ++   K   E   PAS+TK+MT+ +I E ++  ++ L+ ++  S+ A+
Sbjct: 41  AKSAILVDFDTGRILYEKNSHEKLSPASITKIMTMILICEAIEKGRIKLSDRVVASQNAS 100

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S++YLKE    T E+ + ++   SAND   A  E I+GS ++F  +M+ KAK++GM
Sbjct: 101 SLGGSQVYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYMMNKKAKELGM 160

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKN-FPQYYKYFSIRKFRYRNRIITNHNKL 230
            +T + N  GL  +N  T+A D AI+   L K+   + Y    +   R     +TN NKL
Sbjct: 161 LDTNFVNPYGLDAENHYTSAYDVAIMSRELLKHKIIRKYLTTWVDTIREGKFGLTNTNKL 220

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +       G+KTG T  + F +  S       ++AV+MG P S+ R  +A +L+      
Sbjct: 221 VRFYRGCTGVKTGSTDKAKFCVSASALRNGLHLIAVIMGAPDSKTRFNEATKLLDWGFAN 280

Query: 291 KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
            ++             +   K     K+K      K+++A
Sbjct: 281 FSMY------------SPYSKGYCFGKVKIKNGIEKEVEA 308


>gi|329114967|ref|ZP_08243722.1| D-alanyl-D-alanine carboxypeptidase DacF [Acetobacter pomorum
           DM001]
 gi|326695410|gb|EGE47096.1| D-alanyl-D-alanine carboxypeptidase DacF [Acetobacter pomorum
           DM001]
          Length = 382

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 109/265 (41%), Positives = 158/265 (59%), Gaps = 4/265 (1%)

Query: 29  QLMGKILFLSIIMISMASELHAKPK--YSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMT 85
           + +G +  L++   +   + HA+     SSIV+D     +      +  RYPASLTK+MT
Sbjct: 25  KWVGLLAGLAVGTTATYGKAHAQYAGQLSSIVVDARTGAVLSQDDPDLRRYPASLTKLMT 84

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           LY+ F  L++  + L+  +PVS  A+T  PSKL L   ++ T EQ ILAL+T+SAND + 
Sbjct: 85  LYMTFNALRAGAISLDQAVPVSIHASTMEPSKLGLVPGSHLTVEQAILALVTKSANDAAC 144

Query: 146 AFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
           A GE I G SE +FA +M+ +A  +GM NT ++NASGL D +Q+TTARD + LG  L  +
Sbjct: 145 ALGELIGGGSEPQFAAMMTQQAHYLGMSNTTFRNASGLPDPDQMTTARDLSTLGRRLIAD 204

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           FP+YY YFS   F +  RII NHN +L      DG+KTGYT+ +G N+VTS    +  +V
Sbjct: 205 FPEYYHYFSTPYFSFHRRIIPNHNPMLKVYAGADGMKTGYTQEAGRNLVTSAIRDNVRLV 264

Query: 265 AVVMGMPTSQERDQKALELITSFLE 289
            VVMG  ++ +R       +    +
Sbjct: 265 GVVMGASSNTQRSLVMANQLDRGFD 289


>gi|320175602|gb|EFW50695.1| D-alanyl-D-alanine carboxypeptidase [Shigella dysenteriae CDC
           74-1112]
          Length = 347

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 126/242 (52%), Gaps = 8/242 (3%)

Query: 59  IDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---- 113
           +D    Q+     + + R PASLTK+MT Y++   + S ++  +  + V + A  +    
Sbjct: 1   MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRTIDSHRITPDDIVTVGRDAWAKDNPV 60

Query: 114 --NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S ++LKE    +       LI  S ND   A  ++I+G +++F  +M+N A+K+ +
Sbjct: 61  FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL
Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180

Query: 232 N-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
             K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R+++A +L+    + 
Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240

Query: 291 KT 292
            T
Sbjct: 241 FT 242


>gi|269966371|ref|ZP_06180456.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B]
 gi|269828958|gb|EEZ83207.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B]
          Length = 390

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 76/267 (28%), Positives = 136/267 (50%), Gaps = 8/267 (2%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMT 85
               +  + + +  ++  A EL ++     +++D +  ++   +    R  PASLTK+MT
Sbjct: 15  GFAAVSSLAYAAPSVVPNAPELSSR---GYVLMDFHTGKVLVERDAHKRLNPASLTKLMT 71

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSAND 142
            Y+  + + +  + LN ++ +S+ A  +N    SK++++  T  +       LI +S ND
Sbjct: 72  AYVAGQEINTGNITLNDEVVISRNAWAKNFPDSSKMFIEVNTSVSLSDLYRGLIVQSGND 131

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            S A  E ++GSE  F  LM++ A K+ + NT + N  GL      +T  D A LG  + 
Sbjct: 132 ASVAIAEHVAGSESGFVSLMNSWAAKLELSNTAFTNPHGLDSDGLYSTPYDIAKLGQAII 191

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           ++ P  Y  +S   F Y      N N LL  +  N+DG+KTGYT  +G+++ TS    D 
Sbjct: 192 RDLPDIYPLYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYSLATSATQGDM 251

Query: 262 PIVAVVMGMPTSQERDQKALELITSFL 288
            ++AVVMG  +   R+ ++ +L++   
Sbjct: 252 RLIAVVMGAKSENVRESESKQLLSYGF 278


>gi|260461659|ref|ZP_05809906.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium
           opportunistum WSM2075]
 gi|259032729|gb|EEW33993.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium
           opportunistum WSM2075]
          Length = 387

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 92/311 (29%), Positives = 156/311 (50%), Gaps = 8/311 (2%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMM 84
           R+   +      +I++  +A    A P    +V D+   Q+   +   +  YPASL+K+M
Sbjct: 2   RHRHFLKLFSAGAIMLSVLAGPTLANPV---VVFDLKSGQILQHQDAFKRWYPASLSKLM 58

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T Y+ F  + + ++ L++ I V+K +A + PSK+  K  +    +  +  ++ +SAND++
Sbjct: 59  TAYVTFRAIAAGEVQLDSPIKVTKHSAAEPPSKMGFKPGSVMRLDNALKMMLVKSANDIA 118

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A GE I GS+  FA  M+ +A ++GM  T + N +GL+  +Q TTARD A+L + +R+ 
Sbjct: 119 MAVGENIGGSQAAFAERMNAEAVRLGMNGTHFVNPNGLYSPDQYTTARDLAVLVMAIRRE 178

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           FPQY  +FSI       + I N+N L+ +    DG+KTG+   SGFN++ S       +V
Sbjct: 179 FPQYAPWFSIEGLAVGKKAIPNYNLLIGRYPGADGMKTGFVCPSGFNMIGSATRNGRTLV 238

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKTLKHQQT----HRKDNLSSTSLKKSLMIKKLKR 320
           AVV+G  ++  R + A  L+                     D +S   +   +  KK   
Sbjct: 239 AVVLGEKSAVSRAEAAARLLDQGFGAPAAGSATVATLAPYGDTVSPNDMHDEVCKKKTPE 298

Query: 321 TYSQFKKIDAK 331
             S+     AK
Sbjct: 299 EQSEAPPALAK 309


>gi|293396914|ref|ZP_06641188.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM
           4582]
 gi|291420385|gb|EFE93640.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM
           4582]
          Length = 356

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 125/238 (52%), Gaps = 8/238 (3%)

Query: 59  IDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----- 112
           +D N  ++      + R  PASLTK+M+ Y+I + +++ K+     + V K A       
Sbjct: 1   MDYNSGKILAEGNPDSRLDPASLTKIMSSYVIGQAIKAGKIKPTDLVTVGKDAWATGNPV 60

Query: 113 -QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            +  S +++K        +    ++ +S ND S A  ++++GS++ F  LM+  AK +G+
Sbjct: 61  LRGSSLMFIKPGDRVPVMELNKGIVIQSGNDASIALADYVAGSQESFVSLMNGYAKHLGL 120

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           QNT +    GL  + Q +TARD A+L   L ++ P  Y     ++F +      N N+LL
Sbjct: 121 QNTHFLTVHGLDAEGQFSTARDMALLSQALIRDVPDEYALHKEKEFTFNKIRQVNRNRLL 180

Query: 232 NKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
              + ++DGIKTGYT  +G N+V S       +++VV+G P+ + R  ++ +L+T   
Sbjct: 181 WSSNLSVDGIKTGYTSGAGHNLVASATDGPMRLISVVLGAPSDRVRFSESEKLLTWGF 238


>gi|255262711|ref|ZP_05342053.1| D-alanyl-D-alanine carboxypeptidase family protein [Thalassiobium
           sp. R2A62]
 gi|255105046|gb|EET47720.1| D-alanyl-D-alanine carboxypeptidase family protein [Thalassiobium
           sp. R2A62]
          Length = 465

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 96/251 (38%), Positives = 140/251 (55%), Gaps = 3/251 (1%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +++S+   + A P Y+++VID    ++   +  D   +PASLTKMMTLYI F+ ++  +L
Sbjct: 1   MILSIPVRVAAAP-YAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYIAFQAVERGEL 59

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            L+T I + + AA + PSKL L+          I     +SAND +TA G  ISGSE  F
Sbjct: 60  SLDTMITIPRVAANEPPSKLGLRAGQKIRLRYLIRGAAVKSANDAATAIGVAISGSEAAF 119

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           A  M+  A+ +GM  T +KNA GL +   ++TARD   LG  +  ++PQYY  FS R   
Sbjct: 120 ARRMTRTAEAMGMSRTTFKNAHGLTENGHMSTARDMTNLGRHMIYDYPQYYNLFSRRSAD 179

Query: 219 YRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
              R + N N +LL      DGIKTGYTR +GFN+V S     + ++A V G  +S  R+
Sbjct: 180 AGVREVANTNRRLLGNYRGADGIKTGYTRAAGFNLVASAERGQERVIATVFGGRSSATRN 239

Query: 278 QKALELITSFL 288
            +  EL+    
Sbjct: 240 DRVAELLDMGF 250


>gi|331661996|ref|ZP_08362919.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA143]
 gi|315616449|gb|EFU97066.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 3431]
 gi|331060418|gb|EGI32382.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA143]
          Length = 394

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 76/256 (29%), Positives = 129/256 (50%), Gaps = 11/256 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 28  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFK 84

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A        +  S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 85  ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 144

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 145 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYK 204

Query: 214 IRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL     N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 205 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 264

Query: 273 SQERDQKALELITSFL 288
            + R+ ++ +L+T   
Sbjct: 265 FKGREAESKKLLTWGF 280


>gi|225374869|ref|ZP_03752090.1| hypothetical protein ROSEINA2194_00492 [Roseburia inulinivorans DSM
           16841]
 gi|225213252|gb|EEG95606.1| hypothetical protein ROSEINA2194_00492 [Roseburia inulinivorans DSM
           16841]
          Length = 421

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 79/302 (26%), Positives = 139/302 (46%), Gaps = 11/302 (3%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHL 100
            + +S++      S ++++ +   +   K       PAS+TK+MTL +IF+ ++S ++ L
Sbjct: 57  AADSSDVLNLSAPSVLLMEASTGTILYEKNSHTVLRPASITKIMTLILIFDAIESGQISL 116

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
              + VS+ AA+   S+++L+     T +  I  +   SAND   A  EFI GSE  F  
Sbjct: 117 EDTVTVSEYAASMGGSQVFLEPNETQTVDTMIKCISIASANDACVAMAEFICGSEAAFVE 176

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
            M+ +AK +GM +T + N  GL     +T+A D A++   L   +PQ + Y +I      
Sbjct: 177 KMNERAKGLGMNDTTFVNCCGLDVDGHMTSAYDVALMSRELTTKYPQIHDYSTIWMDTIT 236

Query: 221 NRI--------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           +          +TN NKL+ +     G+KTG T  + + +  +       ++AVVM  P 
Sbjct: 237 HVTRRGSEEFGLTNTNKLIRQYQYATGLKTGSTSLAKYCVSATAVKDGMELIAVVMAAPD 296

Query: 273 SQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
            + R   A  L+     K  +   +    D L++  LKK +  +      S F+ +    
Sbjct: 297 FKIRFADAATLLNYGFSKCRIYSDENT--DTLAALPLKKGISDEVSLCYRSPFQYVVTDG 354

Query: 333 HS 334
             
Sbjct: 355 SD 356


>gi|254460841|ref|ZP_05074257.1| D-alanyl-D-alanine carboxypeptidase family protein [Rhodobacterales
           bacterium HTCC2083]
 gi|206677430|gb|EDZ41917.1| D-alanyl-D-alanine carboxypeptidase family protein
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 454

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 92/254 (36%), Positives = 145/254 (57%), Gaps = 3/254 (1%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +++++   + A P Y++ V+D    ++   +  D   +PASLTKMMTLY+ F+ +++ ++
Sbjct: 1   MVVALPLSVSAAP-YAAFVMDARSGEVLHARNADTRLHPASLTKMMTLYVAFQAIENGEI 59

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            L+T + +S  AA + PSKL L+          I A   +SAND +TA GE + GSE  F
Sbjct: 60  TLDTTVKISANAAAEQPSKLGLRSGQRIKFRYLIRAAAVKSANDAATAIGEILEGSEAAF 119

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           A  M+  AK +GM  T +KNA GL +K  ++TARD + LG  L  ++P YY  FS +   
Sbjct: 120 ARRMTRTAKSLGMSKTTFKNAHGLTEKGHLSTARDMSTLGRHLLYDYPDYYNLFSRKSTD 179

Query: 219 YRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
              + + N N +LL+     DGIKTGYTR +GFN+V S     + I+A V G  ++  R+
Sbjct: 180 AGVKTVPNTNRRLLSNYRGADGIKTGYTRAAGFNLVASAERGQERIIATVFGGRSTATRN 239

Query: 278 QKALELITSFLEKK 291
            +  EL+    ++ 
Sbjct: 240 ARVAELLDMGFKRA 253


>gi|312793772|ref|YP_004026695.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180912|gb|ADQ41082.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 386

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 80/284 (28%), Positives = 141/284 (49%), Gaps = 14/284 (4%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I++D +  ++   K   E   PAS+TK+MT+ +I E ++  ++ L+ ++  S+ A+
Sbjct: 41  AKSAILVDFDTGRILYEKNSHEKLSPASITKIMTMILICEAIEKGRIKLSDRVVASQNAS 100

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S++YLKE    T E+ + ++   SAND   A  E I+GS ++F  +M+ KAK++GM
Sbjct: 101 SLGGSQVYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYMMNKKAKELGM 160

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKN-FPQYYKYFSIRKFRYRNRIITNHNKL 230
            +T + N  GL  +N  T+A D AI+   L K+   + Y    +   R     +TN NKL
Sbjct: 161 LDTNFVNPYGLDAENHYTSAYDVAIMSRELLKHKIIRKYLTTWVDTIREGKFGLTNTNKL 220

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +       G+KTG T  + F +  S       ++AV+MG P S+ R  +A +L+      
Sbjct: 221 VRFYRGCTGVKTGSTDKAKFCVSASALRNGLHLIAVIMGAPDSKTRFNEATKLLDWGFAN 280

Query: 291 KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
            ++             +   K     K+K      K+++A   +
Sbjct: 281 FSMY------------SPYSKGYCFGKVKIKNGIEKEVEAILST 312


>gi|119384875|ref|YP_915931.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paracoccus denitrificans
           PD1222]
 gi|119374642|gb|ABL70235.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paracoccus denitrificans
           PD1222]
          Length = 385

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 78/274 (28%), Positives = 146/274 (53%), Gaps = 7/274 (2%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           ++ +   +F  ++++++ +        ++ V DV    +   K  DEP  PAS++K+MTL
Sbjct: 1   MRALTFRIFALLMVLALPARAFDTNARAAWVYDVATGTVLMEKNADEPLPPASMSKLMTL 60

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            ++FE L   ++ ++T  PVS  A     SK++++     T E  I  +I  S ND    
Sbjct: 61  NMLFEALHDGRVAMDTTFPVSTKAWQMGGSKMFVEPADRPTVEDLIHGIIINSGNDACVV 120

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E ++G+E+ FA LM+ +A+++GM N+ + N+SG  D     +  D  +L   L   FP
Sbjct: 121 VAEGLAGTEEAFARLMNERARQLGMANSHFVNSSGWPDPQHRMSMHDLGLLATRLITEFP 180

Query: 207 QYYKYFSIRKFRYRNRIIT---NHNKLLN---KMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           + YK F++ ++ Y+ R+ +   N N LL         DG+KTG+T+ +G+ +V S    D
Sbjct: 181 ELYKNFALTEYNYKGRVPSNAGNRNPLLRLGTGDWKADGLKTGHTQEAGYGLVGSAVQGD 240

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
             IV V+ G+ + + R ++A +++     + T++
Sbjct: 241 RRIVFVITGLSSEKARAEEAEQIVNWAYRQFTMR 274


>gi|327394408|dbj|BAK11830.1| penicillin-binding protein 6B precursor DacD [Pantoea ananatis
           AJ13355]
          Length = 364

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 70/257 (27%), Positives = 122/257 (47%), Gaps = 8/257 (3%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +       A    S +++D    Q+      DE R PASLTK+MT Y++   +  KK+  
Sbjct: 1   MPFPVTPPAIDAASWVLMDATTGQVLTAGNPDERRNPASLTKLMTGYVVDRAIDQKKITR 60

Query: 101 NTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
           +  + V K A        +  S ++LK     +       +I  S ND   A  ++++GS
Sbjct: 61  DDMVTVGKDAWAAGNPVFKGSSLMFLKPGDKLSVRDLSRGVIIDSGNDACVALADYVAGS 120

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           +  F  LM++  +K+G+ NT ++   GL    Q ++A D A L   +    P +Y  +  
Sbjct: 121 QDNFVKLMNHYVEKLGLTNTHFETVHGLDAPGQFSSALDMAKLSRAIIDGEPDFYAMYRE 180

Query: 215 RKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           +   +      N N LL     ++DG+KTG+T  +GFNI+ S       ++AVVMG  ++
Sbjct: 181 KTLTWNGITQNNRNGLLWDNSLHVDGLKTGHTETAGFNIIASNVVGQHRLIAVVMGGKSA 240

Query: 274 QERDQKALELITSFLEK 290
           + R+++A +L+      
Sbjct: 241 KGREEQARKLLVWGQNT 257


>gi|329905874|ref|ZP_08274257.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547445|gb|EGF32266.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 403

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 78/273 (28%), Positives = 147/273 (53%), Gaps = 11/273 (4%)

Query: 29  QLMGKILFLSIIMISMAS----ELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKM 83
            L   ++ LS + +  AS            S +++D    Q+   +    R  PASLTK+
Sbjct: 24  ALAATVISLSSVFVQPASAQTMPAPIVAAKSWLLLDTTSGQVLASQDPTMRIEPASLTKI 83

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGILALITRSAN 141
           MT Y+ F+ ++ K+L L   + VS  A   +PS  K+++   T  + +  +  L+ +S N
Sbjct: 84  MTAYVTFQAIKEKRLDLAQMVNVSVRAWKVDPSSSKMFIDPATPVSVDDLLHGLMVQSGN 143

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D + A  E ++G+E+ F +LM+ +AK++G+ NT + N  GL  ++  +TA+D + L   +
Sbjct: 144 DAAVALAEAVAGTEEAFVVLMNREAKRMGLTNTQFGNPHGLPSQSNYSTAQDLSKLAAAV 203

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY--- 258
             ++P++YK  S++ F Y      N N+LL    ++DG+KTG+T  +G+ I+ S +    
Sbjct: 204 ITDYPEFYKIDSVKSFTYNKITQPNRNRLLWLDPSVDGMKTGHTEAAGYCIIASAKRPNG 263

Query: 259 -KDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
             +  +++VV+G  + Q R Q++ +L+    + 
Sbjct: 264 SGERRLISVVLGANSDQSRTQESQKLLNWGFQN 296


>gi|288957533|ref|YP_003447874.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510]
 gi|288909841|dbj|BAI71330.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510]
          Length = 474

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 97/235 (41%), Positives = 145/235 (61%), Gaps = 1/235 (0%)

Query: 57  IVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           IV+D    Q+   +  +   +PASLTKMMTLY+ F+ L+  +L L+ Q+PVS  A + +P
Sbjct: 88  IVVDARTGQVLIDQDADAITHPASLTKMMTLYLTFDALEDGRLTLDQQLPVSSWAESMSP 147

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           +KL L+       E  IL L+T+SAND +    E + G+E +FA +M+ KA+++GM++T+
Sbjct: 148 TKLGLRAGQTLKVETAILGLVTKSANDAAVVLAEALGGTESRFAEMMTRKARELGMRHTV 207

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           Y+NASGL +  Q+TTARD A L   L ++  +YY YFS R F Y  R + NHN+L+++  
Sbjct: 208 YRNASGLPNMEQVTTARDYAALSRALMRDHAKYYPYFSRRNFVYGGRTLPNHNRLMSRYE 267

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            +DGIKTGYT  SGFN+  S       +V VV+G  ++  RD K   L+     +
Sbjct: 268 GMDGIKTGYTVASGFNLAASAVRDGRRLVGVVLGGKSAVSRDNKMAALLDQAFGR 322


>gi|237730616|ref|ZP_04561097.1| D-alanyl-D-alanine carboxypeptidase fraction A [Citrobacter sp.
           30_2]
 gi|226906155|gb|EEH92073.1| D-alanyl-D-alanine carboxypeptidase fraction A [Citrobacter sp.
           30_2]
          Length = 403

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 77/256 (30%), Positives = 129/256 (50%), Gaps = 11/256 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADTRRDPASLTKMMTSYVIGQAMKAGKFK 93

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V   A        +  S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 94  ETDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMAMIGQALIRDVPNEYSIYK 213

Query: 214 IRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL     N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 214 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 273

Query: 273 SQERDQKALELITSFL 288
            + R+ ++ +L+T   
Sbjct: 274 YKGRETESKKLLTWGF 289


>gi|167755687|ref|ZP_02427814.1| hypothetical protein CLORAM_01202 [Clostridium ramosum DSM 1402]
 gi|167704626|gb|EDS19205.1| hypothetical protein CLORAM_01202 [Clostridium ramosum DSM 1402]
          Length = 379

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 95/322 (29%), Positives = 167/322 (51%), Gaps = 11/322 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTK 82
           +++ +  +  +  L I  +            S+I+I+ N  Q+   K   E  YPAS TK
Sbjct: 1   MKKLLITLLVVCLLPISRVQALDNDVTPNAKSAILIEANSRQILYDKNAEEKLYPASTTK 60

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT+ ++FE L++KK+  + +I  SK AA+   S++YL+     + +    ++   SAND
Sbjct: 61  IMTMILMFEALRNKKISFDDEITTSKYAASMGGSQVYLEVGESLSLKDMFKSIAIASAND 120

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            S A  E I+GS  KF  +M++KAKK+G++NT +KNA+GLHD +  T A D AI+   L 
Sbjct: 121 ASVAVAEHIAGSINKFVEMMNDKAKKLGLKNTHFKNATGLHDPDHYTCAHDLAIMAAYLI 180

Query: 203 KNFPQYYKYFS------IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           +   +     +      IR+   ++  + N NKLL   + +DG+KTGYT+ +G+ +VT+ 
Sbjct: 181 EIGGEDLFAVTSLYDSYIREDTKQSFWLVNTNKLLKLYNGVDGLKTGYTKEAGYCLVTTA 240

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK---TLKHQQTHRKDNLSSTSLKKSL 313
           +     I+ V+M     + R+++   L+          T+  + T  + +L       ++
Sbjct: 241 QRDGQRIIGVLMKETAPKTRNEEMCSLLDYGFNNYKQVTIFKKDTLIEQHLVDKMDNLTI 300

Query: 314 MIK-KLKRTYSQFKKIDAKAHS 334
            +K K    Y++ K  DAK  +
Sbjct: 301 DVKCKKDIVYTKAKSADAKVST 322


>gi|289578326|ref|YP_003476953.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           italicus Ab9]
 gi|289528039|gb|ADD02391.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           italicus Ab9]
          Length = 382

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 86/323 (26%), Positives = 151/323 (46%), Gaps = 30/323 (9%)

Query: 24  IQRNIQLMGKIL-FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLT 81
           +++ +  +  +L F+S + +   S+  +    S+IVID    ++   K    + P AS T
Sbjct: 1   MKKFVFYLFILLYFMSSVKVYANSDYPSIFAKSAIVIDQETGRVLYEKNSHEKLPMASTT 60

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MTL +  E     K +LN  + VSK AA+   S ++L        E  +  L+  S N
Sbjct: 61  KIMTLLVALE-----KGNLNDIVTVSKRAASVGGSSIWLSPGEKIDMESLLYGLMLNSGN 115

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILGI 199
           D +TA  E I GS + FA +M+ KAK+IG  +T +   SGL     +  TTA D A++  
Sbjct: 116 DAATAIAEHIGGSVENFAKIMNEKAKEIGAYDTHFVTPSGLDIGIDDHYTTAYDLALITR 175

Query: 200 LLRKNFPQYYKYFSIRKFRYR------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
              + +P++ +  S ++          +R + N NKLL      DG+KTG+T  +G  +V
Sbjct: 176 YAFR-YPKFAEIVSTKEKTIPWEGKEWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLV 234

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK----KTLKHQQTHR-------KD 302
           +S   +    +AVV+  P   E    +++++     K    + LK ++  +       K+
Sbjct: 235 SSATREGRRFIAVVLNSPPMWE---DSIKILDYAFSKYKPYRVLKREELIKKIEVKGGKE 291

Query: 303 NLSSTSLKKSLMIKKLKRTYSQF 325
           N  S   +   +I   +    + 
Sbjct: 292 NSISVVSEIECIIPASEEEKQKV 314


>gi|240850298|ref|YP_002971691.1| penicillin-binding protein [Bartonella grahamii as4aup]
 gi|240267421|gb|ACS51009.1| penicillin-binding protein [Bartonella grahamii as4aup]
          Length = 449

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 118/269 (43%), Positives = 164/269 (60%), Gaps = 1/269 (0%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKM 83
            + I +   +L  S    S   +     KY++IVID    +          RYPASLTKM
Sbjct: 12  CKTIAISFVVLAFSYCWASATPQGAYPDKYAAIVIDATTGKTLFQANATLKRYPASLTKM 71

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MTLY++FE +Q +++  NT IPVS  AA + P+K+  K     + E    ALITRSANDV
Sbjct: 72  MTLYLLFEAMQMRRVTPNTPIPVSHYAAMRPPTKIGFKAGQTISAESAAKALITRSANDV 131

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           + A  E++ GSEKKFA +M+ KA+K+GM++T + NASGL D +  +TARD A L + LRK
Sbjct: 132 AAAIAEYLGGSEKKFAQMMTIKARKLGMKHTHFANASGLPDVHNYSTARDIATLSLALRK 191

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           +FP+ YK F  + F +R   I +HNKL+  M  +DGIKTGYT+ SG N+ TS+R     +
Sbjct: 192 HFPKQYKLFKTKSFNFRGHKINSHNKLVKIMKGVDGIKTGYTQMSGSNLATSMRLDGRSV 251

Query: 264 VAVVMGMPTSQERDQKALELITSFLEKKT 292
           VAVVMG  +S  RD+    L+  +L K +
Sbjct: 252 VAVVMGGKSSTARDEHMASLLNQYLPKAS 280


>gi|238791637|ref|ZP_04635275.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia intermedia ATCC
           29909]
 gi|238729253|gb|EEQ20769.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia intermedia ATCC
           29909]
          Length = 403

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 75/254 (29%), Positives = 130/254 (51%), Gaps = 8/254 (3%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           +M   +      + ++ID N  ++      D  R PASLTKMMT Y+I + +++ K+   
Sbjct: 36  TMIPGVPQIDSEAYVLIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGKIGPE 95

Query: 102 TQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
             + V K A        +  S ++LK        +    +  +S ND   A  ++++GS+
Sbjct: 96  DMVTVGKDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYVAGSQ 155

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             F  LM+N  K +G+QNT +K   GL  + Q ++ARD A++G  L ++ P  Y  +  +
Sbjct: 156 DSFVNLMNNYVKALGLQNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAIYKEK 215

Query: 216 KFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           +F + N    N N LL     N+DGIKTG+T  +G+N+V S       +++ V+G  T +
Sbjct: 216 EFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTEAAGYNLVASATDGQMRLISAVLGGHTYK 275

Query: 275 ERDQKALELITSFL 288
            R+ ++ +L+T   
Sbjct: 276 GRETESKKLLTWGF 289


>gi|261214059|ref|ZP_05928340.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
           str. Tulya]
 gi|260915666|gb|EEX82527.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
           str. Tulya]
          Length = 416

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 103/264 (39%), Positives = 160/264 (60%), Gaps = 6/264 (2%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMM 84
           R  +    + F + ++ +      A    S +V D +  +M G         PASL KMM
Sbjct: 20  RISRFFASVAFGTAVLCASG----AMASTSWVVFDADSGRMLGQDDASAQHAPASLAKMM 75

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TLY+ FE L++ +LH +  +P+SK AA++   KL+LK     +T   +  +I  SAND +
Sbjct: 76  TLYLTFEALKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAA 135

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-NQITTARDQAILGILLRK 203
           T  GE+++GSE  FA LM+ +A++IGM++TI+ N SGL    +Q+TTARD A+LG+ LR+
Sbjct: 136 TVMGEYLAGSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRR 195

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           +FP+ Y  FS R F +R R+   HN L+ +   +DGIKTGYT  SG+N+V+S    +  +
Sbjct: 196 DFPEEYALFSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHL 255

Query: 264 VAVVMGMPTSQERDQKALELITSF 287
           V VV+G  ++ +RD +  +L+T F
Sbjct: 256 VGVVLGAGSAGQRDGQMAKLLTRF 279


>gi|110632991|ref|YP_673199.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium
           sp. BNC1]
 gi|110283975|gb|ABG62034.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Chelativorans
           sp. BNC1]
          Length = 287

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 115/282 (40%), Positives = 168/282 (59%), Gaps = 6/282 (2%)

Query: 20  GSIYIQRNIQLMGKIL-FLSIIMISMASELHAKP----KYSSIVIDVNKNQMTG-FKQDE 73
           GS+ + R   L   +L F+S    + A     +P    KYSSIV+D    ++   +  D 
Sbjct: 4   GSLALPRLFWLAFIVLPFVSGCGSTSAVAPLVQPIESEKYSSIVVDAGSGEILHQYAADA 63

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           PRYPASLTKMMTLY++FE + S  L   ++I  S  AA++ PSKL L+    F  +  IL
Sbjct: 64  PRYPASLTKMMTLYLLFEAIDSGILSPTSRITASAYAASRPPSKLGLRPGDSFDVQTAIL 123

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           AL  +SANDV+ A  E + G+E++FA +M+ KA+++GM++T++ NASGL D  Q+TTARD
Sbjct: 124 ALCVKSANDVAAAVAEHLGGTEQQFAGMMTAKARQLGMRSTVFTNASGLPDSGQMTTARD 183

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            A+L + L   FP +Y  F+ + F +  R I  HN LL ++  +DGIKTGY R SG+NI 
Sbjct: 184 MALLALALHNRFPHHYHVFANQSFAHEGRTIKGHNDLLGRVDGVDGIKTGYIRASGYNIA 243

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKH 295
           TS       IV +VMG  T++ R+     L+ ++L +     
Sbjct: 244 TSAARGRKRIVVIVMGGDTARSRNAHVERLLEAYLPQAGFAA 285


>gi|91786161|ref|YP_547113.1| penicillin-binding protein 6 [Polaromonas sp. JS666]
 gi|91695386|gb|ABE42215.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Polaromonas sp. JS666]
          Length = 400

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 84/261 (32%), Positives = 138/261 (52%), Gaps = 15/261 (5%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           + A +       S +++DV  NQ+   K  D P  PASLTK+MT Y++F+ L+SKK+ L 
Sbjct: 29  AQAPQAPEIAARSYLLLDVTANQILAAKDIDSPVEPASLTKLMTEYLVFDALKSKKIDLK 88

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
               VS+ A     S++++  K     E  I  ++ +S ND + A  E + G+ + F  L
Sbjct: 89  QTFGVSERAWKMPGSRMFIDPKMQVPVEDLIKGMVVQSGNDATMALAEGVGGTAEHFVRL 148

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           M+ +AK +GM++T YKN  GL +    TTARD +IL   L ++FP Y  Y +I+K+RY  
Sbjct: 149 MNEQAKALGMKSTAYKNPEGLTEPGHTTTARDLSILATRLMRDFPDYIGYSAIKKYRYPG 208

Query: 222 RII---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK-----------DDPIVAVV 267
                 TN N LL +   +DG+KTG+T  +G+ ++ + R                ++A+V
Sbjct: 209 TPAANDTNRNTLLFRDPTVDGLKTGHTEAAGYCMIATARRDFPNLGVGGAPGGRRLLAIV 268

Query: 268 MGMPTSQERDQKALELITSFL 288
           +G  +   R  ++ +L+    
Sbjct: 269 LGTSSDSARANESQKLLNWGY 289


>gi|227821091|ref|YP_002825061.1| putative D-alanyl-D-alanine carboxypeptidase [Sinorhizobium fredii
           NGR234]
 gi|227340090|gb|ACP24308.1| putative D-alanyl-D-alanine carboxypeptidase [Sinorhizobium fredii
           NGR234]
          Length = 417

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 106/259 (40%), Positives = 161/259 (62%), Gaps = 1/259 (0%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYL 93
           + L+ I+  +A+   A    +S VID    ++      DE  YPASLTKMMTLY+ FE L
Sbjct: 6   IALAAIVAFVAATASAFAGSASFVIDARSGRVLSAENADELNYPASLTKMMTLYLTFEAL 65

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
              +++  T +P+SK AA + P+KL LK  +  T E+ +  +I  SAND + A  E + G
Sbjct: 66  HRGEINWQTPVPMSKEAARKPPTKLGLKPGSAITVEEAVYGMIIHSANDAAAAMAEKLGG 125

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           SE  FA +M+ KA+++GM  T++ NASGL    Q+TTARD A LG+ L ++FP+ Y+ FS
Sbjct: 126 SEAAFAQMMTAKARRLGMTRTVFVNASGLPASQQVTTARDMAKLGMALLRDFPREYRLFS 185

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            + F +R R++  HNKL+ +   +DGIKTGYT  SGFN+V+++R  +  ++ VV+G  T+
Sbjct: 186 AQSFNFRGRVVRGHNKLMYRYDGMDGIKTGYTNASGFNLVSAVRDGNRRVIGVVLGGRTA 245

Query: 274 QERDQKALELITSFLEKKT 292
           + RD K   L+   L + +
Sbjct: 246 KSRDNKMAALLDQHLGRPS 264


>gi|49475404|ref|YP_033445.1| penicillin-binding protein [Bartonella henselae str. Houston-1]
 gi|49238210|emb|CAF27420.1| Penicillin-binding protein [Bartonella henselae str. Houston-1]
          Length = 449

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 121/270 (44%), Positives = 167/270 (61%), Gaps = 1/270 (0%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
             + I +   +L LS        +     KY++IVID N  +          RYPASLTK
Sbjct: 11  CYKKIAIAFVVLALSYSWAFATPQEAYPDKYAAIVIDANTGKTLFQANATLKRYPASLTK 70

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           MMTLY++FE +  +++  NT I VS+ AAT+ P+KL LK     + ++   ALITRSAND
Sbjct: 71  MMTLYLLFEAMHMRRVTPNTPILVSRNAATRPPTKLGLKTGQTISAQEAAKALITRSAND 130

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
           V+TA  E++ G+EKKFA +M+ KA+K+GM NT + NASGL D    +TARD A L + LR
Sbjct: 131 VATAIAEYLGGNEKKFARMMTAKARKLGMINTHFANASGLPDVRNYSTARDMATLSLALR 190

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           K+FPQ YK F I+ F +    +  HNKL+  M  +DGIKTGYT+ SG N+ TS+R +   
Sbjct: 191 KHFPQQYKLFKIKSFIFHGHTVNTHNKLVKTMKGVDGIKTGYTQMSGSNLATSMRIEGRS 250

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKT 292
           IVAVVMG  +S  RD+    L++ +L K +
Sbjct: 251 IVAVVMGGKSSTARDKHMASLLSQYLPKAS 280


>gi|327188719|gb|EGE55918.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli
           CNPAF512]
          Length = 366

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 90/303 (29%), Positives = 158/303 (52%), Gaps = 9/303 (2%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTL 86
           ++L+   +  +   ++  S   A P    I++DV   ++   ++     YPASLTK+MT+
Sbjct: 1   MRLLRFTVAATAAFLASVSLAQANPH---ILVDVQTGRVLEHEEAFRKWYPASLTKLMTV 57

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y +F+ +++ ++ L+T I +SK AA Q  +K+Y K     T +  +  L+ +SAND++ A
Sbjct: 58  YTVFDAIRAGQISLDTPIVMSKRAAAQPAAKMYFKPGQKLTLDSALKILMVKSANDIAVA 117

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E + G+++ F   M+ +A K+GM ++ + N +GL  K Q TTARD A+L + LR++FP
Sbjct: 118 VAEAVGGTQEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALRRDFP 177

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           QY  YFS+  F    + + N N L+ +    DG+KTG+   SGFN + S       +V+V
Sbjct: 178 QYAGYFSLEGFTTGQQNVPNLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRTLVSV 237

Query: 267 VMGMPTSQERDQKALELITSFLEKK-----TLKHQQTHRKDNLSSTSLKKSLMIKKLKRT 321
           V+G  +   R      L+      +     TL   + + +     T +   +   K  + 
Sbjct: 238 VLGTDSLAARADATANLLQKGFTTQFPGNDTLGSLKPYGQGQDQVTDITADICSAKGAKI 297

Query: 322 YSQ 324
            S+
Sbjct: 298 RSE 300


>gi|315500037|ref|YP_004088840.1| serine-type d-ala-d-ala carboxypeptidase [Asticcacaulis excentricus
           CB 48]
 gi|315418049|gb|ADU14689.1| Serine-type D-Ala-D-Ala carboxypeptidase [Asticcacaulis excentricus
           CB 48]
          Length = 464

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 90/254 (35%), Positives = 151/254 (59%), Gaps = 2/254 (0%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQS 95
           +  +  + A +     +Y++IV+D    ++    + D PRYPASLTK+MTLY+ FE +  
Sbjct: 40  VLAVSPARAQDPADSDRYAAIVVDAQSGEVFYAMRADSPRYPASLTKIMTLYMAFEEMAQ 99

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
            +L  +  I +S  AA+  P+K  L+     T +  +  +   SAND++ A GE I GSE
Sbjct: 100 GRLKPDDVITLSAHAASMPPTKSGLRAGDTITVDMAMRLIAAYSANDLAAALGEHIGGSE 159

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           ++FA LM+ KA+++GM  + + NASGL D  Q+++ARD A+L   + ++FPQYY+YF +R
Sbjct: 160 QRFAALMTVKAQELGMTRSNFVNASGLPDSRQVSSARDFAVLARAVMRDFPQYYEYFHVR 219

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
             ++  R  +NHN LL     +DG+KTG+   +G+N+V S R  +  ++AV++G     +
Sbjct: 220 SVQFNGRTYSNHNPLL-AYPGVDGMKTGFINAAGYNLVASQRKGNHRLIAVMLGGSNKAQ 278

Query: 276 RDQKALELITSFLE 289
           R +    L+ +  +
Sbjct: 279 RREHVTSLMNTGFD 292


>gi|283834062|ref|ZP_06353803.1| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC
           29220]
 gi|291070205|gb|EFE08314.1| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC
           29220]
          Length = 403

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 77/256 (30%), Positives = 129/256 (50%), Gaps = 11/256 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 37  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADSRRDPASLTKMMTSYVIGQAMKAGKFK 93

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + V   A        +  S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 94  ETDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 153

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 154 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMAMIGQALIRDVPNEYSIYK 213

Query: 214 IRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL     N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 214 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 273

Query: 273 SQERDQKALELITSFL 288
            + R+ ++ +L+T   
Sbjct: 274 YKGRETESKKLLTWGF 289


>gi|89895051|ref|YP_518538.1| hypothetical protein DSY2305 [Desulfitobacterium hafniense Y51]
 gi|219669462|ref|YP_002459897.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
           hafniense DCB-2]
 gi|89334499|dbj|BAE84094.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539722|gb|ACL21461.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
           hafniense DCB-2]
          Length = 380

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 151/314 (48%), Gaps = 19/314 (6%)

Query: 31  MGKILFLSIIMISMASELHA------KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           +  +  L++ + ++A    A          S+I++D    Q+   K+  +   PAS+TK+
Sbjct: 5   LSWVFALALFIGNLAVPHQAYGAVLETEAASAILMDAKSGQILFEKEIHKELPPASVTKL 64

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MTL +  E ++S ++ L  ++  S+ A++   S++YL+    F+ E+ ++++   SAND 
Sbjct: 65  MTLLVAAEAVESGRVSLTDKVTASEGASSLGGSQIYLEPGETFSLEEMLISIAVGSANDA 124

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
             A GE ISG+ + F   M+ KAK+IG  +T + NA GL  +   T+A D A++G    K
Sbjct: 125 CYAVGEHISGTHEAFVEEMNKKAKEIGANHTHFVNAYGLPAQGHYTSAYDLALMGREALK 184

Query: 204 NFPQYYKYFSIRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
            +P   K  +++++  R     + N NKLL      DG KTG+T  + + + +++     
Sbjct: 185 -YPLVRKLTNMKEYDLRGGKFKLWNTNKLLWWYEGADGFKTGWTSEANYCLASTVERDGL 243

Query: 262 PIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRT 321
            ++AVVMG+P  +    ++++L          K      +         K  +IK  K  
Sbjct: 244 RLIAVVMGVPQVRGHFTESMKLYNYGFANYAYKEYAPVGQ---------KQGVIKVRKGM 294

Query: 322 YSQFKKIDAKAHST 335
                 +  KA   
Sbjct: 295 EEDLVAVTEKALGV 308


>gi|146310825|ref|YP_001175899.1| D-alanyl-D-alanine carboxypeptidase fraction A [Enterobacter sp.
           638]
 gi|145317701|gb|ABP59848.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Enterobacter sp. 638]
          Length = 403

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 87/339 (25%), Positives = 150/339 (44%), Gaps = 30/339 (8%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNKNQMT 67
             + +  R +Q M     L    +S+A             +      S I+ID N  ++ 
Sbjct: 1   MKTTFSARFLQRMALTTALCAATLSVAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVL 60

Query: 68  GF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYL 120
                D  R PASLTKMMT Y+I + +++ K      + V   A        +  S ++L
Sbjct: 61  AEMNADSRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDAWATGNPVFKGSSLMFL 120

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           K        Q I  +  +S ND   A  +F +GS+  F  LM++    +G++N+ ++   
Sbjct: 121 KPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVSALGLKNSHFQTVH 180

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
           GL  + Q ++ARD A++G  L ++ P  Y  +  ++F +     TN N LL      +DG
Sbjct: 181 GLDAEGQYSSARDMALIGQALIRDVPNEYTIYKEKEFTFNGIRQTNRNGLLWDNSLKVDG 240

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS---FLEK-KTLKH 295
           IKTG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T    F E    LK 
Sbjct: 241 IKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGRETESKKLLTWGFRFFETVNPLKA 300

Query: 296 QQ-------THRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
            +           ++ +S  + K L +   +      K 
Sbjct: 301 GKEFASEPVWFGDNDRASLGVDKDLYLTIPRGRMKDLKA 339


>gi|187731390|ref|YP_001879357.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella boydii CDC
           3083-94]
 gi|187428382|gb|ACD07656.1| serine-type D-Ala-D-Ala carboxypeptidase [Shigella boydii CDC
           3083-94]
          Length = 403

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 135/287 (47%), Gaps = 19/287 (6%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNKNQMTGF 69
           +I+  R ++ +     L    IS A             +      S I+ID N  ++   
Sbjct: 3   TIFSARIMKRLALTTALCTAFISAAHADDLNIKTMIPSVPQIDAESYILIDYNSGKVLAE 62

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKE 122
           +  D  R PASLTKMMT Y+I + +++ K      + +   A        +  S ++LK 
Sbjct: 63  QNADVRRDPASLTKMMTSYVIGQTMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKP 122

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
                  Q I  +  +S ND   A  +F +GS+  F  LM++    +G++NT ++   GL
Sbjct: 123 GMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGL 182

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIK 241
               Q ++ARD A++G  L ++ P  Y  +  ++F +      N N LL     N+DGIK
Sbjct: 183 DADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIK 242

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           TG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T   
Sbjct: 243 TGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGF 289


>gi|188591036|ref|YP_001795636.1| d-alanyl-d-alanine carboxypeptidase; penicillin-binding protein 6a
           [Cupriavidus taiwanensis LMG 19424]
 gi|170937930|emb|CAP62914.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
           [Cupriavidus taiwanensis LMG 19424]
          Length = 399

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 82/277 (29%), Positives = 147/277 (53%), Gaps = 13/277 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
            +      S ++ DV   Q    +  D    PASLTK+MT Y+ FE L+ K+L L+  + 
Sbjct: 37  PMPQVAAKSWMLYDVTSGQALASQNADARIEPASLTKLMTAYLAFEALKEKRLTLDQAVV 96

Query: 106 VSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            +        + S+++++     T +  +L LI +S ND + A  E + GSE+ F  +M+
Sbjct: 97  PTNLVLKVKSDESRMFIEPNKPVTVQDLLLGLIVQSGNDAALALAEAVGGSEEGFVAMMN 156

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI 223
            +A+++GM+NT + N  G+ D N  TTA D A L   L K+FP+YY  +S ++F Y    
Sbjct: 157 REAQRMGMKNTHFTNTDGIPDPNHYTTAVDLATLTTRLIKDFPEYYSMYSQKEFTYNKIR 216

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMPTSQER 276
             N N+LL     +DG+KTG+T+++G+ +++S +            ++++V+G  T Q R
Sbjct: 217 QPNRNRLLYIDSTVDGVKTGHTKSAGYCLISSAKRPLANVPDGSRRLISIVIGTTTEQVR 276

Query: 277 DQKALELITSFLE-KKTLKHQQTHRKDNLSSTSLKKS 312
            Q++L+++    +   TL+     +   L++  + K 
Sbjct: 277 TQESLKILNYGFQFFDTLRLYD--KGQVLATPDIYKG 311


>gi|260773274|ref|ZP_05882190.1| D-alanyl-D-alanine carboxypeptidase [Vibrio metschnikovii CIP
           69.14]
 gi|260612413|gb|EEX37616.1| D-alanyl-D-alanine carboxypeptidase [Vibrio metschnikovii CIP
           69.14]
          Length = 347

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 75/235 (31%), Positives = 122/235 (51%), Gaps = 5/235 (2%)

Query: 59  IDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN--- 114
           +D +  ++   K+ +    PASLTKMMT Y+I + L    + L+  + +S+ A  +N   
Sbjct: 1   MDYHSGKILAEKEMNTKLSPASLTKMMTSYVIGQELNRGNISLDDDVVISENAWAKNYPD 60

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            SK++++  T          +I +S ND   A  E ++GSE  F  LM+  A  + M NT
Sbjct: 61  SSKMFIEVGTSVKVRDLNKGIIIQSGNDACVAMAEHVAGSEDAFVDLMNAWASSLNMTNT 120

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-K 233
            + N  GL      +T  D A+LG  L ++ P  Y  ++ +KF Y      N N LL  K
Sbjct: 121 HFANVHGLDHPELYSTPYDMALLGQALIRDVPDEYALYAEQKFTYNGITQYNRNGLLWDK 180

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
             N+DGIKTG+T N+G+++V+S    +  ++AVVMG      R  ++ +L++   
Sbjct: 181 SMNVDGIKTGHTTNAGYSLVSSATEGNMRLIAVVMGTKDINSRKTESKKLLSYGF 235


>gi|328541732|ref|YP_004301841.1| D-alanyl-D-alanine carboxypeptidase family [polymorphum gilvum
           SL003B-26A1]
 gi|326411484|gb|ADZ68547.1| D-alanyl-D-alanine carboxypeptidase family [Polymorphum gilvum
           SL003B-26A1]
          Length = 458

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 87/273 (31%), Positives = 145/273 (53%), Gaps = 5/273 (1%)

Query: 18  PYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-Y 76
            +G ++ +R +     +L  + +    A    A    S IVID +  Q+    Q   R Y
Sbjct: 1   MFGGLFDRRALSF--GVLIAAFLAAVQAPPARAD-IGSWIVIDADSGQVLDEFQGTRRWY 57

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTKMMT Y+  + ++  +  L++ +  S+ +  Q PSK+  K  T  T +  +  ++
Sbjct: 58  PASLTKMMTAYVTLKAIREGRSSLDSAVTQSQNSLAQPPSKMGFKVGTQMTVDTALKIVM 117

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +SAND++ A GE I G+E  F  LM+ +A ++GM++T + N  GL D  Q+++A D AI
Sbjct: 118 VKSANDIAVALGEAIGGTEANFVALMNAEAARLGMRDTHFANPHGLPDNRQVSSALDMAI 177

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK-LLNKMHNIDGIKTGYTRNSGFNIVTS 255
           L   LR++FP+   Y+      +  + + + N+  L ++   DG+KTGY  NSG+N+  S
Sbjct: 178 LARALRRDFPEARGYYGHAGLTFGKQTLRSANREFLLRVPGADGMKTGYICNSGYNVAAS 237

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
              +   ++AVV+G  +  ER   A E I    
Sbjct: 238 ATRRGRTVIAVVLGASSGLERTAFAREAIDKGF 270


>gi|17942531|pdb|1HD8|A Chain A, Crystal Structure Of A Deacylation-Defective Mutant Of
           Penicillin-Binding Protein 5 At 2.3 A Resolution
 gi|28374028|pdb|1NJ4|A Chain A, Crystal Structure Of A Deacylation-Defective Mutant Of
           Penicillin-Binding Protein 5 At 1.9 A Resolution
 gi|61679891|pdb|1SDN|A Chain A, Crystal Structure Of A Deacylation-Defective Mutant Of
           Penicillin-Binding Protein 5 Modified By Mercury
          Length = 363

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 76/256 (29%), Positives = 129/256 (50%), Gaps = 11/256 (4%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  D  R PASLTKMMT Y+I + +++ K  
Sbjct: 8   MIPGVPQIDAE---SYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFK 64

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               + +   A        +  S ++LK        Q I  +  +S ND   A  +F +G
Sbjct: 65  ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRDINLQSGNDACVAMADFAAG 124

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+  F  LM++    +G++NT ++   GL    Q ++ARD A++G  L ++ P  Y  + 
Sbjct: 125 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYK 184

Query: 214 IRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +      N N LL     N+DGIKTG+T  +G+N+V S       +++ VMG  T
Sbjct: 185 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 244

Query: 273 SQERDQKALELITSFL 288
            + R+ ++ +L+T   
Sbjct: 245 FKGREAESKKLLTWGF 260


>gi|288555970|ref|YP_003427905.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudofirmus OF4]
 gi|288547130|gb|ADC51013.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudofirmus OF4]
          Length = 386

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 80/300 (26%), Positives = 153/300 (51%), Gaps = 13/300 (4%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELH-----AKPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           +++ +  +  I+ +  +   M          A+   S+IVI+ +  ++   K   +   P
Sbjct: 1   MRKVLSTLLAIVLVCTLAAPMGYAAEKQASLAENASSAIVIERDTGEVLFEKNSHDQLPP 60

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MT+ +I E +    L  + +I  S+ AA+   S+++L+     T    + A+  
Sbjct: 61  ASMTKIMTMLLIMEAIDEGSLSYDDKIRTSENAASMGGSQVFLEPGEEMTVTDMLKAIAV 120

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND S A  E + G+E++F  +M++KAK++G++NT + N++GL  +N  TTA D A++
Sbjct: 121 ASGNDASVAMAEHLGGTEEEFVSMMNDKAKELGLENTNFMNSNGLPAENHYTTAYDLAMI 180

Query: 198 GILLRKNFPQYYKYFSI-----RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
              L K +    K+  I     R+       + N NKL+     +DG+KTG+TR + + +
Sbjct: 181 SKELLK-YEDITKFTGIYEDYLRQDSENKFWLVNTNKLVKFYPGVDGLKTGFTREAMYCL 239

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
             + +  D  +++V+MG PT +ER+ +  E++     +    H+   R   L+   + K 
Sbjct: 240 TATAQKNDMRVISVIMGAPTPKERNAQITEMLDYSFSQFKT-HKLYERDHILAEVKVSKG 298


>gi|218671981|ref|ZP_03521650.1| probable D-alanyl-D-alanine carboxypeptidase protein [Rhizobium
           etli GR56]
          Length = 277

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 104/271 (38%), Positives = 157/271 (57%), Gaps = 4/271 (1%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLY 87
           +L    L  +++M + A    A+   +S V+D    Q+      D+  YPASLTKMMTLY
Sbjct: 7   RLRATALSSALLMGAFA---QAEAGQASFVVDAQSGQVLEASNPDDLNYPASLTKMMTLY 63

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + FE L   +L    ++ +S+ A ++ P KL +      T  + + +++  SAND + A 
Sbjct: 64  LAFEALHEGRLTWEQKLTMSENAESKEPFKLAVGAGRRVTLREAVESIVVLSANDSAVAI 123

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E + GSE+ FA  M++KA ++GM++T++KN SGL D  Q+TTARD A LG+ L ++FP+
Sbjct: 124 AEQLGGSEQAFAKTMTDKAHQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRDFPE 183

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            +K FS+R F++R   +  HN L+ +   +DGIKTGYT  SG+N+VTS       +V VV
Sbjct: 184 EFKLFSMRGFQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKGGRRVVGVV 243

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKHQQT 298
           MG  T+  RD K   L+ S L   T     T
Sbjct: 244 MGEKTAGLRDDKMAGLLDSTLSPSTATAYTT 274


>gi|300816637|ref|ZP_07096858.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           107-1]
 gi|300530867|gb|EFK51929.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           107-1]
          Length = 347

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 125/242 (51%), Gaps = 8/242 (3%)

Query: 59  IDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---- 113
           +D    Q+     + + R PASLTK+MT Y++   + S ++  +  + V + A  +    
Sbjct: 1   MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRTIDSHRITPDDIVTVGRDAWAKDNPV 60

Query: 114 --NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S ++LKE    +       LI  S ND   A  ++I+G +++F  +M+N A+K+ +
Sbjct: 61  FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           + T ++   GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL
Sbjct: 121 KGTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180

Query: 232 N-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
             K  N+DG+KTG+T  +GFN++ S       ++AVVMG  +++ R+++A +L+    + 
Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240

Query: 291 KT 292
            T
Sbjct: 241 FT 242


>gi|309787902|ref|ZP_07682512.1| D-alanyl-D-alanine carboxypeptidase dacD [Shigella dysenteriae
           1617]
 gi|308924301|gb|EFP69798.1| D-alanyl-D-alanine carboxypeptidase dacD [Shigella dysenteriae
           1617]
          Length = 347

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 125/242 (51%), Gaps = 8/242 (3%)

Query: 59  IDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---- 113
           +D    Q+     + + R PASLTK+MT Y++   + S ++  +  + V + A  +    
Sbjct: 1   MDYTTGQILTSGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60

Query: 114 --NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S ++LKE    +       LI  S ND   A  ++I+G +++F  +M+N  +K+ +
Sbjct: 61  FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYVEKLHL 120

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL
Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180

Query: 232 N-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
             K  NIDG+KTG+T  +GFN++ S       ++AVVMG  +++ R+++A +L+    + 
Sbjct: 181 WDKTMNIDGLKTGHTSGAGFNLMASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240

Query: 291 KT 292
            T
Sbjct: 241 FT 242


>gi|299068147|emb|CBJ39364.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
           [Ralstonia solanacearum CMR15]
          Length = 397

 Score =  278 bits (712), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 86/294 (29%), Positives = 156/294 (53%), Gaps = 14/294 (4%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
              + ++ DV   Q+ G    DE   PASLTK+MT Y+    ++  KL  +  +  ++T 
Sbjct: 40  AARAWMLTDVTSGQVLGGGNMDERIEPASLTKLMTAYLAVAAVRDGKLKYDQMLTPTETV 99

Query: 111 --ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                + S+++L+     +    +  LI +S ND +    E + G+E  F +LM+ +A++
Sbjct: 100 RSVKTDESRMFLQPGKPVSVRDLLQGLIVQSGNDAALVLAEAVGGTETNFVMLMNREAER 159

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           +GM+ T + NA+GL D N  TTARD +IL   L ++FP+ YK++S ++F Y N    N N
Sbjct: 160 LGMKGTHFMNAAGLPDPNHYTTARDLSILTSALIRDFPEDYKFYSQKEFTYNNIKQPNRN 219

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMPTSQERDQKAL 281
           +LL     +DG+KTG+T+++G+ ++TS +            +++V++G  + Q R Q++L
Sbjct: 220 RLLWIDPTVDGVKTGHTKSAGYCLITSAKRPLPDVPNASRRLLSVMIGTKSEQVRTQESL 279

Query: 282 ELITSFLE-KKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
           +++    +   TL+  +   K  L +  + K    K +K   ++ K I     S
Sbjct: 280 KVLNYGYQFFDTLRLYEA--KQALQTPDVYKGQA-KTVKLGVAEDKWITVPKGS 330


>gi|313114949|ref|ZP_07800445.1| putative D-alanyl-D-alanine carboxypeptidase [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622742|gb|EFQ06201.1| putative D-alanyl-D-alanine carboxypeptidase [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 368

 Score =  278 bits (712), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 78/252 (30%), Positives = 126/252 (50%), Gaps = 3/252 (1%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +  + A      P  ++ +ID     +   K  D+    AS+TK+MTL + FE +   ++
Sbjct: 4   VQPAAAQPALELPCRAACLIDQQTGTILYEKNADQQMPIASITKVMTLLLTFEAVHDGRI 63

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            ++T +PVS+ A     S+++L+    FT ++ I A+   SAND + A  E + GSE  F
Sbjct: 64  AMDTLVPVSEHAYHMGGSQIWLEPGEQFTLDEMIKAICVSSANDAAVAVAELVGGSEPGF 123

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+ +A ++GM NT + NA GL  +  ++TA D AI+   +    P+   Y  I    
Sbjct: 124 VQMMNARAAELGMVNTTFHNACGLDTEGHLSTAHDVAIMSREILNTCPEVLHYTGIWTDT 183

Query: 219 YRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
            R     + N NKLL + + I G+KTG T  +G  I  S       ++AVV+G  +S ER
Sbjct: 184 LRGGATQLVNTNKLLKRYNGITGLKTGTTSGAGVCISASATRDGLDLIAVVLGSLSSSER 243

Query: 277 DQKALELITSFL 288
              A  L+    
Sbjct: 244 FTAATTLLDYGF 255


>gi|85706300|ref|ZP_01037394.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius sp. 217]
 gi|85669073|gb|EAQ23940.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius sp. 217]
          Length = 387

 Score =  278 bits (711), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 86/287 (29%), Positives = 151/287 (52%), Gaps = 11/287 (3%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASL 80
           + + R+I     +L L + +   A E  AK   ++ V+DV    +   K  D    PAS+
Sbjct: 1   MILSRHIA--AALLCLGVALPVQAFETSAK---AAFVMDVTTGTVLLDKNADTALPPASM 55

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           +K+MTLY+ FE ++S +L L+ ++PVS+ A +   S ++L        E  +  +I  S 
Sbjct: 56  SKLMTLYVAFEAVRSGRLTLDERLPVSEHAMSYGGSTMFLDTTDRVRVEDLLRGIIVLSG 115

Query: 141 NDVSTAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           ND      E +S  G+E  FA  M+ +A+++GM N++++NASG   +  + + RD A+L 
Sbjct: 116 NDACAVIAEALSPDGTEAGFARFMTQRAQQMGMTNSMFRNASGWPAEGHVMSVRDLALLA 175

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNR---IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
             + ++FP +YK F+  +FR+  R    I N N LL      DG+KTG+T  +GF +  S
Sbjct: 176 RHIIEDFPDFYKMFAETEFRFDGRAPSNINNRNPLLGLGIGADGLKTGHTEQAGFGLTGS 235

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKD 302
               D  ++ V+ G+ T+Q+R +++  ++     +   K   T   +
Sbjct: 236 AIQGDRRVIFVISGLATTQDRARESEAIVNWAFRQFAQKSVLTAGDE 282


>gi|167037532|ref|YP_001665110.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115947|ref|YP_004186106.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166856366|gb|ABY94774.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929038|gb|ADV79723.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 381

 Score =  278 bits (711), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 92/323 (28%), Positives = 164/323 (50%), Gaps = 10/323 (3%)

Query: 22  IYIQRNIQLMGKILFLSIIM--ISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPA 78
           ++ +    L+  IL +S ++     A  L+ K K S+I+++ N  Q+   K    P  PA
Sbjct: 1   MFKRLLTLLVSVILAISFVLNGTVYADTLNLKSK-SAILMEANTGQILYEKDSHKPLPPA 59

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           S+TK+MTL +  E + S K+ +  ++  SK A     +++YL+     T +  + A+   
Sbjct: 60  SVTKVMTLLLAIEAIDSGKIKITDKVVTSKHAFDMGGTQIYLEVGEEMTVDDLMKAIAMN 119

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           SAND S A  E+I+G+E+ F  +M+ +AK++G +NT +KNA+GL ++  +T+  D A++ 
Sbjct: 120 SANDASVALAEYIAGTEENFVEMMNKRAKELGAKNTTFKNATGLPEEGHLTSVYDIAMIS 179

Query: 199 ILLRKNFPQYYKYFSIR--KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
             L K     +KY + +    R     + N NKLL +   +DGIKTG T  + + +  + 
Sbjct: 180 RELVK-HESIFKYLTNKLDSLRNGKFSLINTNKLLWRYKGVDGIKTGSTSEALYCMAATA 238

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLK-HQQTHRKDNLSSTSLKKSLM 314
           +  D  ++AVV G P S+ R  +A +L+       +++K   +     N+     K+  +
Sbjct: 239 KRGDTRLIAVVFGAPDSETRFSEAAKLLDYGFANYESVKVASKGQSFGNVKVLKGKREAV 298

Query: 315 IKK-LKRTYSQFKKIDAKAHSTQ 336
                   Y   KK + K   T+
Sbjct: 299 SVVCRDDEYILIKKGEGKNIKTE 321


>gi|124265504|ref|YP_001019508.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylibium
           petroleiphilum PM1]
 gi|124258279|gb|ABM93273.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylibium
           petroleiphilum PM1]
          Length = 384

 Score =  278 bits (711), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 77/273 (28%), Positives = 143/273 (52%), Gaps = 13/273 (4%)

Query: 29  QLMGKILFLSIIMISMASELHAK-----PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           +L   +  ++  +  +A++  A         S ++ DV  NQ+   K  D P  PASLTK
Sbjct: 3   RLFVLLFAVATALTGVAAQAQAVQPPEIAARSYLLFDVTTNQVLAAKDPDSPIEPASLTK 62

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRS 139
           +M+ Y++F+ L+ KKL L   +PVS+ A        S+ +L   +  T +  +   I +S
Sbjct: 63  LMSAYLVFQALKDKKLTLTQTLPVSERAWRTGMTGASRSFLPLNSQVTVDDLLKGEIVQS 122

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND +    E + GS ++F  +M+ +A+  G++ T +KN  GL      +TARD A++  
Sbjct: 123 GNDATVVLAEGVGGSLEQFVAMMNRQAQAFGLKATTFKNPEGLPAAGHTSTARDLAVIAT 182

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            L ++FP+Y +Y  +R+F +      N N LL +   +DG+KTG+T  +G+ ++T+ +  
Sbjct: 183 RLVQDFPEYLRYSVMREFTFNKIKQPNRNLLLYRDPTVDGLKTGFTDAAGYCMITTAKRD 242

Query: 260 ----DDPIVAVVMGMPTSQERDQKALELITSFL 288
                  +++VV+G  + + R  ++ +L+    
Sbjct: 243 FPNGPRRLISVVLGAASMESRANESQKLLNWGY 275


>gi|46201033|ref|ZP_00055930.2| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 419

 Score =  278 bits (711), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 104/245 (42%), Positives = 151/245 (61%), Gaps = 1/245 (0%)

Query: 47  ELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           +     +Y+SIVID     +      D   YPASLTK+MTL+++F+ L S ++ ++++  
Sbjct: 14  QPAQAGRYASIVIDAQTGSVLHAANPDARSYPASLTKVMTLFLLFDELDSGRIRMDSKFT 73

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
            S  AA Q+PSKL L+     + E  ILAL+T+SAND +    E + G+E KFA +M+ K
Sbjct: 74  ASAHAAAQSPSKLGLEPGETISVENLILALVTKSANDAAVVAAEGVGGTESKFAQMMTRK 133

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
           A+ +GM+NT+Y+NASGL D  Q++T RDQAIL   L ++ P YYKYFS R+F Y  + I 
Sbjct: 134 AQALGMRNTVYRNASGLPDTGQVSTVRDQAILARALIRSHPGYYKYFSTRQFVYEGQPIN 193

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            HN+L+ +    DGIKTGY   SGFN+++S +  D  I+ VV G  T+  RD    +L+ 
Sbjct: 194 THNRLMLRYQGADGIKTGYIHASGFNLISSAKRGDQRIIGVVFGGATATSRDNHMAQLLD 253

Query: 286 SFLEK 290
               K
Sbjct: 254 KGFAK 258


>gi|319899049|ref|YP_004159142.1| penicillin-binding protein [Bartonella clarridgeiae 73]
 gi|319403013|emb|CBI76568.1| penicillin-binding protein [Bartonella clarridgeiae 73]
          Length = 449

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 119/277 (42%), Positives = 170/277 (61%), Gaps = 1/277 (0%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
             + + +   +L +S        +     KY++IVID N  +          RYPASLTK
Sbjct: 11  CYKKVVIPLIVLVISYSWALATPKEAHPDKYAAIVIDANTGKTLFQANATLKRYPASLTK 70

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           MMTLY+IFE ++++++  NT IP+S  AAT+ P+K+ +K     + E    ALIT+SAND
Sbjct: 71  MMTLYMIFEAMKNRRITPNTPIPISNYAATRPPTKMGIKAGQTISVESAAKALITKSAND 130

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
           V+TA GE++ GSE+KFA +M+ KA+K+GM+NT + NASGL D    +TA+D A L + LR
Sbjct: 131 VATAIGEYLGGSEQKFAQMMTVKARKLGMKNTRFANASGLPDTRNYSTAQDMATLALALR 190

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           K+FP+ YK F +  FR+R + I +HN L+  +  IDGIKTGYT+ SG N+ TS+R     
Sbjct: 191 KHFPEQYKLFKMTHFRFRGQTINSHNTLIKTIKGIDGIKTGYTQMSGSNLATSMRIDGRS 250

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTH 299
           IVAVVMG  +S  RD     L+  +L K +      H
Sbjct: 251 IVAVVMGGKSSTTRDIHMASLLKQYLPKASRTKTDEH 287


>gi|283784410|ref|YP_003364275.1| penicillin-binding protein 5 (D-alanyl-D-alanine carboxypeptidase)
           [Citrobacter rodentium ICC168]
 gi|282947864|emb|CBG87425.1| penicillin-binding protein 5 (D-alanyl-D-alanine carboxypeptidase)
           [Citrobacter rodentium ICC168]
          Length = 403

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/289 (27%), Positives = 134/289 (46%), Gaps = 19/289 (6%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNKNQMT 67
             + +  R +Q M     L    +S A             +      S I+ID N  ++ 
Sbjct: 1   MKTTFSARFLQRMALTTALCTAALSGAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVL 60

Query: 68  GFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYL 120
             +  D  R PASLTKMMT Y+I + +++ K      + +   A        +  S ++L
Sbjct: 61  AEQNADTRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFL 120

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           K        Q I  +  +S ND   A  +F +GS+  F  LM++    +G++NT ++   
Sbjct: 121 KPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVTALGLKNTHFQTVH 180

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
           GL    Q ++ARD A++G  L ++ P  Y  +  ++F +      N N LL     N+DG
Sbjct: 181 GLDADGQYSSARDMALIGQALIRDVPNEYSVYKEKEFTFNGIRQLNRNGLLWDNSLNVDG 240

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           IKTG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T   
Sbjct: 241 IKTGHTAKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLTWGF 289


>gi|325293678|ref|YP_004279542.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3]
 gi|325061531|gb|ADY65222.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3]
          Length = 433

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 96/270 (35%), Positives = 162/270 (60%), Gaps = 1/270 (0%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTK 82
           I+R +             I       A+  Y+  ++D N  ++   +  +   +PASLTK
Sbjct: 5   IKRGMAGAWVFALAFFCAILSLQASPAQAGYAHFIMDANTGKVLAAQNADVLNHPASLTK 64

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           MMTLY+ FE L + ++  + +I +S+  A   PSKLY++E   FT  + +  +I +SAND
Sbjct: 65  MMTLYMTFEALHAGRIRWDQKIRMSRNGAAVIPSKLYVREGQTFTVREAVYGMIVKSAND 124

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
           ++   G+ + GSE +FA +M+ KA+++GM  T+++NASGL  K+Q+TTARD A LG+ L+
Sbjct: 125 MAEGMGDHLGGSEAQFAQMMTRKARQLGMTKTVFRNASGLPSKSQVTTARDMAKLGLALQ 184

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           ++FP+ Y  F++  F +R + I  HN L+ +   +DGIKTGYT  SGFN+V+++ +    
Sbjct: 185 RDFPKEYGLFAMESFSFRGKRIRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAINHNGRR 244

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +V VV+G  T++ RD +   L+   + + +
Sbjct: 245 VVGVVLGGKTARGRDAQMAALLDKAMPQAS 274


>gi|190892030|ref|YP_001978572.1| D-alanyl-D-alanine carboxypeptidase [Rhizobium etli CIAT 652]
 gi|218516887|ref|ZP_03513727.1| probable D-alanyl-D-alanine carboxypeptidase protein [Rhizobium
           etli 8C-3]
 gi|190697309|gb|ACE91394.1| probable D-alanyl-D-alanine carboxypeptidase protein [Rhizobium
           etli CIAT 652]
          Length = 290

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 104/279 (37%), Positives = 160/279 (57%), Gaps = 4/279 (1%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLY 87
           +L    L  ++++   A    A+   +S V+D    Q+     QD+  YPASLTKMMTLY
Sbjct: 7   RLRATALSSALLISGFA---QAEAGQASFVVDAQSGQVLEASNQDDLNYPASLTKMMTLY 63

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + FE L   +L    ++ +S+ A ++ P KL +      T  + + +++  SAND + A 
Sbjct: 64  LAFEALHQGRLTWEQKLTMSENAESKEPFKLAIGAGRQVTLREAVESIVVLSANDSAVAI 123

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E + GSE+ FA  M++KA+++GM++T++KN SGL D  Q+TTARD A LG+ L ++FP+
Sbjct: 124 AEQLGGSEQAFAKAMTDKARQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRDFPE 183

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            +K FS+R F++R   +  HN L+ +   +DGIKTGYT  SG+N+VTS       +V VV
Sbjct: 184 EFKLFSMRGFQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKGGRRVVGVV 243

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSS 306
           MG  T+  RD K   L+ S L   T     T      ++
Sbjct: 244 MGEKTAGLRDDKMAGLLDSTLSPSTATAYTTPGTQPGAT 282


>gi|326315218|ref|YP_004232890.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372054|gb|ADX44323.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 393

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/253 (32%), Positives = 136/253 (53%), Gaps = 9/253 (3%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A +       + +++DV   Q+   K  D P   ASLTK+MT Y++F+ L S+K+ L  +
Sbjct: 32  APQPPEIAARNYLLLDVTSGQVLAAKDIDAPVEQASLTKLMTGYLVFDALSSRKITLEQK 91

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           +PVS  A     S++++  K     +  +  +I +S ND S A  E + GS + F  LM+
Sbjct: 92  LPVSVLAWKMPGSRMFIDPKMQVPVDDLLKGMIVQSGNDASMALAEGVGGSAENFVKLMN 151

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI 223
           ++AK +GM+NT YKN  GL +    TTARD +IL   L K+FP+Y  Y+S + + Y    
Sbjct: 152 DQAKALGMKNTAYKNPEGLTEPGHTTTARDLSILATRLMKDFPEYMHYYSTKHYAYPGTP 211

Query: 224 I---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK-----DDPIVAVVMGMPTSQE 275
               TN N LL +   +DG+KTG+T  +G+ +V + +          ++++V+G  +   
Sbjct: 212 PSNGTNRNSLLFRDPTVDGLKTGHTAAAGYCLVATSKRDFPNVGQRRLLSIVLGTASENA 271

Query: 276 RDQKALELITSFL 288
           R  ++ +L+    
Sbjct: 272 RANESQKLLNWGY 284


>gi|329113407|ref|ZP_08242188.1| D-alanyl-D-alanine carboxypeptidase DacC [Acetobacter pomorum
           DM001]
 gi|326697232|gb|EGE48892.1| D-alanyl-D-alanine carboxypeptidase DacC [Acetobacter pomorum
           DM001]
          Length = 406

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/234 (33%), Positives = 127/234 (54%), Gaps = 2/234 (0%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + ++D N       K  DE   P+SLTKMMT Y+ F  L+S +L L+  +PVS+ A    
Sbjct: 68  ACILDYNSGATLLEKNADERMPPSSLTKMMTAYVTFGMLKSGRLKLDQMLPVSERAWRMQ 127

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S++++      + +  I  ++ +S ND      E ISGSE++F  LM++ A K+G+ N+
Sbjct: 128 GSRMFVPLGQSVSVQDLIQGMVIQSGNDACIVIAEGISGSEEQFVALMNDTATKLGLTNS 187

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            + NA+G   +N   +ARD A L + L  +FP+YY +FS ++F +      N N L+ K 
Sbjct: 188 HFMNATGWPAENHYMSARDVAYLALRLIHDFPEYYHFFSEKEFLFNKIRQENRNSLVVKG 247

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
              DG+KTG+T   GF +  S   +   +V  V G+P+S  R ++A  L+    
Sbjct: 248 L-ADGLKTGHTDAGGFGLCASSEREGRRVVLAVNGLPSSAARGREAERLMGWAF 300


>gi|218676325|ref|YP_002395144.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus
           LGP32]
 gi|218324593|emb|CAV26124.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus
           LGP32]
          Length = 394

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 78/285 (27%), Positives = 141/285 (49%), Gaps = 8/285 (2%)

Query: 9   SAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTG 68
             + +  + P  S++I  N  ++      +  ++     L AK     ++ID N   +  
Sbjct: 1   MKRFSKYSLPLLSMFIVSNAAIVANTAVAAPSIVPSPPSLGAK---GYVLIDFNSGDVLV 57

Query: 69  FKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKT 124
            K       PASLTK+MT Y+  + ++   +  + Q+ +S+ A  +N    SK++++  T
Sbjct: 58  EKNAHTKLNPASLTKLMTSYVAGQEMKRGNISADDQVRISENAWAKNFPDSSKMFIEVNT 117

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
                     LI +S ND S A  E ++GS+  F  LM++ A  + ++NT + NA GL  
Sbjct: 118 DVAMMDLYRGLIIQSGNDASVAIAEHVAGSQDAFVDLMNSWAASLKLENTHFANAHGLDA 177

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTG 243
            +  +T  D A+LG  + ++ P  Y  +S R F Y      N N LL  +   +DG+KTG
Sbjct: 178 DDLYSTPYDIALLGRAIIRDLPDVYGLYSERSFSYNKITQHNRNGLLRDRSLTVDGMKTG 237

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           YT  +G+++ +S    +  ++AVVMG  + + R+  + +L++   
Sbjct: 238 YTSGAGYSLASSATQGEMRLIAVVMGASSVKSRESDSKQLLSYGF 282


>gi|56963557|ref|YP_175288.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16]
 gi|56909800|dbj|BAD64327.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16]
          Length = 388

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 72/267 (26%), Positives = 138/267 (51%), Gaps = 9/267 (3%)

Query: 29  QLMGKILFLSIIMISMASE----LHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
            L+  +LF      + A E      A+   S+I+I+ +  ++   K  D    PAS+TK+
Sbjct: 9   MLLFVLLFAYAGEAAFAKEKELPQLAENAASAILIERDTGEVLFEKDSDNMLPPASMTKI 68

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT+ +I E ++   +     + VS+ AA+   S+++L+     + +  + A+   S ND 
Sbjct: 69  MTMLLIMEAIEEGTIKYEDMVTVSENAASMGGSQVFLEPGEEMSVDDLLKAIAIASGNDA 128

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           + A  E I G+E++F  +M+ KA ++G++NT ++N +GL + +  ++A D A++   L K
Sbjct: 129 AVAMAEHIGGTEQEFVKMMNAKAAELGLENTQFQNPNGLPEADHYSSAHDLAVMAKELLK 188

Query: 204 --NFPQYYKYFS--IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
             N   Y   +   +RK   +   + N NKL+     +DG+KTG+T+ + + +  +    
Sbjct: 189 YENITSYTGIYEDYLRKGTDKEFWLVNTNKLVKFYPGVDGLKTGFTQEAKYGLTATAEKN 248

Query: 260 DDPIVAVVMGMPTSQERDQKALELITS 286
              ++AVVMG  T +ER+     ++  
Sbjct: 249 GMRVIAVVMGAKTPKERNATITNMLDY 275


>gi|83590342|ref|YP_430351.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica
           ATCC 39073]
 gi|83573256|gb|ABC19808.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica
           ATCC 39073]
          Length = 412

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 76/266 (28%), Positives = 142/266 (53%), Gaps = 6/266 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
              +I++D    ++   K     Y PAS+TK+MT+ +  + + + +  L+  + VS+ A 
Sbjct: 60  AKGAILMDPQTGEILWEKNSHAHYYPASMTKLMTMVVAMDMVANGQATLDEPVQVSERAE 119

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S+++L     F  EQ ++A+   SAND + A  E ++GSE+ F  +M+ KAK++G+
Sbjct: 120 SFGGSEVFLAVGETFPLEQMLIAIAVASANDAAVAVAEHLAGSEEAFVAMMNAKAKELGL 179

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN---RIITNHN 228
           ++T + N  GLHD+   T+A D A++     K +P+  ++ SI+++  R     I+   N
Sbjct: 180 KDTHFANCHGLHDEQNYTSAYDMAVIARYALK-YPKIREWTSIKRYTLRKDPLTILDTTN 238

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           K+L      DG KTG+T  +G N+V+++      +VAVVMG+ T Q    ++++L     
Sbjct: 239 KMLYWYPGTDGFKTGFTDAAGLNLVSTVERDGLRLVAVVMGVETPQGHFTESMKLYNWAF 298

Query: 289 EKKTLKHQQTHRKDNLSSTSLKKSLM 314
           ++   K         ++S  + K  +
Sbjct: 299 KQWAFKEF-YGPGQVVASIPVGKGQV 323


>gi|223986124|ref|ZP_03636147.1| hypothetical protein HOLDEFILI_03455 [Holdemania filiformis DSM
           12042]
 gi|223961929|gb|EEF66418.1| hypothetical protein HOLDEFILI_03455 [Holdemania filiformis DSM
           12042]
          Length = 383

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/275 (29%), Positives = 137/275 (49%), Gaps = 12/275 (4%)

Query: 29  QLMGKILFLSIIMISMASELHA-----KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           +L   ++ LS+ ++S+ +             ++I+ID    Q+   K      YPAS+TK
Sbjct: 3   KLASIVIALSLFLVSVHATTSQGVDLTPSAKAAILIDYETGQILYEKNSSAKLYPASMTK 62

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           MM+L ++ E + + KL  +T++  S  A++   S+++L+     T E    A    SAND
Sbjct: 63  MMSLLLVVEAIHNGKLSWDTEVTASAHASSMGGSQIFLETGEVMTVEDLYKASTVASAND 122

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
              A  E + GSE+ FA +M+ KA+++G++ T + NA+GLHD N  + A+D A +G  L 
Sbjct: 123 AIVALAEKVGGSEENFAAMMNEKAEQLGLEQTHFVNATGLHDDNHYSCAKDMAAIGRALI 182

Query: 203 KN-FPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           +       ++ S     IR        + N NKL+     +DG+KTGYT  S + I  + 
Sbjct: 183 QEGQDDILRFTSTYDDYIRADTENKFWLVNTNKLIRTYQGMDGLKTGYTTQSMYCITVTA 242

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
           +     ++ V MG PT   R+ +A  L+       
Sbjct: 243 KRDGLRLIGVAMGEPTRDVRNSEASALLDYGFSTY 277


>gi|312171895|emb|CBX80152.1| D-alanyl-D-alanine carboxypeptidase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 402

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 77/257 (29%), Positives = 134/257 (52%), Gaps = 11/257 (4%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHL 100
           +  A +L AK   + I++D N +++      + R  PASLTKMM+ Y+I + L++ K+  
Sbjct: 33  MPAAPQLDAK---AWILMDYNSSKVLAEYNADLRLDPASLTKMMSSYVIGQALKAGKISK 89

Query: 101 NTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
           +  + V K A        +  S ++LK        +    ++ +S ND S A  ++++GS
Sbjct: 90  DDVVTVGKDAWATGNPVLKGSSLMFLKPGDRIAVSELNKGIVIQSGNDASIALADYVAGS 149

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           +  F  LM++  + +G++NT +K   GL    Q +TARD A++G  L ++ P  Y     
Sbjct: 150 QDAFVGLMNHYVQALGLKNTHFKTVHGLDANGQYSTARDMALIGQALIRDVPDEYALHKD 209

Query: 215 RKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           + F +      N N+LL   +  +DGIKTG+T  +G N+V S    D  I++VV+G  T 
Sbjct: 210 KAFTFNKIRQHNRNRLLWSTNLQVDGIKTGHTSGAGNNLVASAVDGDRRIISVVLGAATD 269

Query: 274 QERDQKALELITSFLEK 290
             R +++ +L+   L  
Sbjct: 270 AVRFRESEKLLIWGLRN 286


>gi|241766088|ref|ZP_04764001.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidovorax delafieldii
           2AN]
 gi|241363892|gb|EER59198.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidovorax delafieldii
           2AN]
          Length = 406

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 78/255 (30%), Positives = 138/255 (54%), Gaps = 9/255 (3%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           + A +       + +++DV  NQ+   K  D P   ASLTK+MT Y++F+ L++KK+ L 
Sbjct: 43  AQAPQPPEIAARTYMLVDVTANQILAAKDIDAPVEQASLTKLMTGYLVFDALRAKKITLE 102

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
            ++PVS  A     S++++  K     +  +  +I +S ND + A  E + G+ + F  L
Sbjct: 103 QKLPVSVRAWKMPGSRMFIDPKMQVAVDDLLKGMIVQSGNDATMALAEGVGGTAENFVKL 162

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           M+++A+ +GM+NT YKN  GL +    TTARD A L   L K+FP+Y  Y+S +++ Y  
Sbjct: 163 MNDQAQALGMKNTAYKNPEGLTEPGHTTTARDLATLASRLMKDFPEYMHYYSTKQYSYPG 222

Query: 222 RII---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK-----DDPIVAVVMGMPTS 273
                  N N LL +   +DG+KTG+T  +G+ +V + +          ++++V+G  + 
Sbjct: 223 TPASNGNNRNMLLFRDPTVDGLKTGHTAAAGYCLVATSKRDFPNVGQRRLLSIVLGAASE 282

Query: 274 QERDQKALELITSFL 288
             R  ++ +L+    
Sbjct: 283 NARANESQKLLNWGY 297


>gi|307265140|ref|ZP_07546699.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306919762|gb|EFN49977.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 381

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 92/323 (28%), Positives = 161/323 (49%), Gaps = 10/323 (3%)

Query: 22  IYIQRNIQLMGKILFLSIIM--ISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPA 78
           ++ +    L+  IL +S ++     A  L+ K K S+I+I+ N  Q+   K    P  PA
Sbjct: 1   MFKRLLTLLVSVILAISFVLNGTVYADTLNLKSK-SAILIEANTGQILYEKDSHNPLPPA 59

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           S+TK+MTL +  E + S K+ +  ++  SK A     +++YL+     T +  + A+   
Sbjct: 60  SVTKVMTLLLAIEAIDSGKIKITDKVVTSKHAFDMGGTQIYLEVGEEMTVDDLMKAIAMN 119

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           SAND S A  E+I+G+E+ F  +M+ +AK++G +NT +KNA+GL ++  +T+  D A++ 
Sbjct: 120 SANDASVALAEYIAGTEENFVEMMNKRAKELGAKNTTFKNATGLPEEGHLTSVYDIAMIS 179

Query: 199 ILLRKNFPQYYKYFSIR--KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
             L K     +KY + +    R     + N NKLL +    DGIKTG T  + + +  + 
Sbjct: 180 RELVK-HESIFKYLTNKLDSLRNGKFSLINTNKLLWRYKGADGIKTGSTSEALYCMAATA 238

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHRKDNLSSTSLKKSLMI 315
           +  D  ++AVV G P S+ R  +A +L+       +++K     +          K   +
Sbjct: 239 KRGDTRLIAVVFGAPDSETRFSEAAKLLDYGFANYESVKVASKGQSFGNVKVFKGKKQAV 298

Query: 316 KKL--KRTYSQFKKIDAKAHSTQ 336
             +     Y   KK + K   T+
Sbjct: 299 SVVCRDDEYILIKKGEGKNIKTE 321


>gi|218662722|ref|ZP_03518652.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli IE4771]
          Length = 289

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 105/281 (37%), Positives = 164/281 (58%), Gaps = 4/281 (1%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLY 87
           +L    L  +++M ++A    A+   +S V+DV   Q+     QD+  YPASLTKMMTLY
Sbjct: 7   RLRATALSSALLMCAVA---QAEAGQASFVLDVQSGQVLEASNQDDLNYPASLTKMMTLY 63

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + FE L   +L  + ++ +S+ A ++ P KL +      T  + + +++  SAND + A 
Sbjct: 64  LAFEALHDGRLTWDQKLTMSENAESKEPFKLAVGAGRKVTLREAVESIVVLSANDSAVAI 123

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E + GSE+ FA  M++KA+++GM++T++KN SGL D  Q+TTARD A LG+ L ++FP+
Sbjct: 124 AEQLGGSEQAFARTMTDKARQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRDFPE 183

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            +K FS+R F++R   +  HN L+ +   +DGIKTGYT  SG+N+VTS       +V VV
Sbjct: 184 EFKLFSMRGFQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKGGRRVVGVV 243

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
           MG  T+  RD K   L+ S L      +     +   + T 
Sbjct: 244 MGEKTAGLRDDKMAGLLDSTLSSTATAYTTPGSQPGATMTD 284


>gi|312797424|ref|YP_004030346.1| D-alanyl-D-alanine serine-type carboxypeptidase [Burkholderia
           rhizoxinica HKI 454]
 gi|312169199|emb|CBW76202.1| D-alanyl-D-alanine serine-type carboxypeptidase (EC 3.4.16.4)
           [Burkholderia rhizoxinica HKI 454]
          Length = 403

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/308 (25%), Positives = 150/308 (48%), Gaps = 21/308 (6%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
              A    S +++D +  Q       DE   PASLTK+MT Y++F+ L++KK+ ++  + 
Sbjct: 40  PPPAVNARSWVLVDASSAQTLASANADERVEPASLTKLMTSYLVFDALKTKKISMDQTVM 99

Query: 106 VSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
             +       + S+++++     T    +  +I +S ND + A  E + GSE  F  +M+
Sbjct: 100 PGEAVRRVGTDESRMFIEANKPVTVHDLVYGMIVQSGNDAAIALAELVGGSEAHFVQMMN 159

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI 223
             A+K+GM+NT Y + +G+ +    T+A D A+L   L +++P+YY  F+++ F Y    
Sbjct: 160 EAAQKLGMKNTHYADVNGMPNPQHYTSAADLAVLSAHLIRDYPEYYSIFAVKDFTYNKIK 219

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMPTSQER 276
             N N+LL     +DG+KTG+T+ +G+ ++ S +            +V+V+MG P   +R
Sbjct: 220 QLNRNRLLWIDPTVDGLKTGHTKAAGYCLIASAKRPLPGVPDASRRLVSVMMGEPKEHDR 279

Query: 277 DQKALELITS-FLEKKTLKHQQTHRK----------DNLSSTSLKKSLMIKKLKRTYSQF 325
            Q +L+++   +    T++  + ++            N     +K    I   K    + 
Sbjct: 280 TQDSLKMLNYGYTAYDTVRLYKANQVIDSPRVYKGLQNAVPVGVKSDQYITVPKGVGDKI 339

Query: 326 KKIDAKAH 333
           K +  +  
Sbjct: 340 KPVLERHG 347


>gi|326391736|ref|ZP_08213259.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992236|gb|EGD50705.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 381

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 92/323 (28%), Positives = 161/323 (49%), Gaps = 10/323 (3%)

Query: 22  IYIQRNIQLMGKILFLSIIM--ISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPA 78
           ++ +    L+  IL +S ++     A  L+ K K S+I+I+ N  Q+   K    P  PA
Sbjct: 1   MFKRLLTLLVSVILAISFVLNGTVYADTLNLKSK-SAILIEANTGQILYEKDSHKPLPPA 59

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           S+TK+MTL +  E + S K+ +  ++  SK A     +++YL+     T +  + A+   
Sbjct: 60  SVTKVMTLLLAIEAIDSGKIKITDKVVTSKHAFDMGGTQIYLEVGEEMTVDDLMKAIAMN 119

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           SAND S A  E+I+G+E+ F  +M+ +AK++G +NT +KNA+GL ++  +T+  D A++ 
Sbjct: 120 SANDASVALAEYIAGTEENFVEMMNKRAKELGAKNTTFKNATGLPEEGHLTSVYDIAMIS 179

Query: 199 ILLRKNFPQYYKYFSIR--KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
             L K     +KY + +    R     + N NKLL +    DGIKTG T  + + +  + 
Sbjct: 180 RELVK-HESIFKYLTNKLDSLRNGKFSLINTNKLLWRYKGADGIKTGSTSEALYCMAATA 238

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHRKDNLSSTSLKKSLMI 315
           +  D  ++AVV G P S+ R  +A +L+       +++K     +          K   +
Sbjct: 239 KRGDTRLIAVVFGAPDSETRFSEAAKLLDYGFANYESVKVASKGQSFGNVKVFKGKKQAV 298

Query: 316 KKL--KRTYSQFKKIDAKAHSTQ 336
             +     Y   KK + K   T+
Sbjct: 299 SVVCRDDEYILIKKGEGKNIKTE 321


>gi|147677558|ref|YP_001211773.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum
           thermopropionicum SI]
 gi|146273655|dbj|BAF59404.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum
           thermopropionicum SI]
          Length = 392

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/333 (23%), Positives = 144/333 (43%), Gaps = 24/333 (7%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMA-----------------SELHAKPKYSSIVIDVNKN 64
           +  +R +  +G ++F +I++ S                            S+I+++    
Sbjct: 1   MLCKRKV--VGVLVFFAIVICSAGRAAWAAQEAARSPKGNVPAALETTAESAILLEPATG 58

Query: 65  QMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEK 123
           ++   K+   R P AS+TK+MTL +  E +   K  L  ++  S+ A     S++YL+  
Sbjct: 59  KIIYEKEPHKRLPMASVTKLMTLLLAVEAVDEGKFKLTDRVVASENAWEMGGSQIYLEPG 118

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
              +    +LA+  +SAND S A  E I+GSE+ F   M+ KA+ +G+ NT + N  GL 
Sbjct: 119 EEMSLWDLLLAIGLQSANDASVAVAEHIAGSEEAFVQAMNEKARSLGLNNTNFVNCHGLT 178

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIITNHNKLLNKMHNIDGIK 241
             N  T+A D A++     K+ P + K  +++++  R     + N NKLL      D  K
Sbjct: 179 ADNHYTSAHDMAMILKEGLKS-PLFRKISAMKEYELRGGAFKLWNTNKLLWWYDGADAGK 237

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRK 301
           TG+T  + + + +S       ++ VV+G P  Q   +++ +L      +    +      
Sbjct: 238 TGWTEAAKYCLASSAERDGLRLICVVLGTPEPQSHFRESTKLFDYGFARYKAVN-LAPAG 296

Query: 302 DNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
           +   +  + K         T  +   +  K   
Sbjct: 297 EVAGTVRVGKGKAGSVKALTAEKVAVVVPKGED 329


>gi|300947320|ref|ZP_07161521.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           116-1]
 gi|300453072|gb|EFK16692.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           116-1]
          Length = 347

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 126/242 (52%), Gaps = 8/242 (3%)

Query: 59  IDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---- 113
           +D    Q+     + + R PASLTK+MT Y++   + S ++  +  + V + A  +    
Sbjct: 1   MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60

Query: 114 --NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S ++LKE    +       LI  S ND   A  ++I+G +++F  +M+N A+K+ +
Sbjct: 61  FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T ++   GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL
Sbjct: 121 KDTHFETVHGLDALGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180

Query: 232 N-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
             K  N+DG+KTG+T  +GFN++ S       ++AV+MG  +++ R+++A +L+    + 
Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVIMGADSAKGREEEARKLLRWGQQN 240

Query: 291 KT 292
            T
Sbjct: 241 FT 242


>gi|297544605|ref|YP_003676907.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842380|gb|ADH60896.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 382

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 85/323 (26%), Positives = 150/323 (46%), Gaps = 30/323 (9%)

Query: 24  IQRNIQLMGKIL-FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLT 81
           +++ +  +  +L F+S + +   S+  +    S+IVID    ++   K    + P AS T
Sbjct: 1   MKKFVFYLFILLYFMSSVKVYANSDYPSIFAKSAIVIDQETGRVLYEKNSHEKLPMASTT 60

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MTL +  E     K +L   + VSK AA+   S ++L        E  +  L+  S N
Sbjct: 61  KIMTLLVALE-----KGNLKDIVTVSKRAASVGGSSIWLSPGEKIDMESLLYGLMLNSGN 115

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILGI 199
           D +TA  E I GS + FA +M+ KAK+IG  +T +   SGL     +  TTA D A++  
Sbjct: 116 DAATAIAEHIGGSVENFAKIMNEKAKEIGAYDTHFATPSGLDIGIDDHYTTAYDLALITR 175

Query: 200 LLRKNFPQYYKYFSIRKFRYR------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
              + +P++ +  S ++          +R + N NKLL      DG+KTG+T  +G  +V
Sbjct: 176 YAFR-YPKFAEIVSTKEKTIPWEGKEWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLV 234

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK----KTLKHQQTHR-------KD 302
           +S   +    +AVV+  P   E    +++++     K    + LK ++  +       K+
Sbjct: 235 SSATREGRRFIAVVLNSPPMWE---DSIKILDYAFSKYKPYRVLKREELIKKIEVKGGKE 291

Query: 303 NLSSTSLKKSLMIKKLKRTYSQF 325
           N  S   +   +I   +    + 
Sbjct: 292 NSISVVSETECIIPASEEEKQKV 314


>gi|190893669|ref|YP_001980211.1| D-alanyl-D-alanine carboxypeptidase [Rhizobium etli CIAT 652]
 gi|190698948|gb|ACE93033.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CIAT
           652]
          Length = 366

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 89/296 (30%), Positives = 154/296 (52%), Gaps = 9/296 (3%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL 93
           +  +   ++  S   A P    I++DV   ++   ++     YPASLTK+MT+Y +F+ +
Sbjct: 8   VAATAAFLASVSLAQANPH---ILVDVQTGRVLEHEEAFRKWYPASLTKLMTVYTVFDAI 64

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           ++ ++ L+T I +SK AA Q  +K+Y K     T +  +  L+ +SAND++ A  E + G
Sbjct: 65  RAGQISLDTPIVMSKRAAAQPAAKMYFKPGQKLTLDSALKILMVKSANDIAVAVAEAVGG 124

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           +++ F   M+ +A K+GM ++ + N +GL  K Q TTARD A+L + LR++FPQY  YFS
Sbjct: 125 TQEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALRRDFPQYAGYFS 184

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           +  F    + + N N L+ +    DG+KTG+   SGFN + S       +V+VV+G  + 
Sbjct: 185 LEGFTNGQQNVPNLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRTLVSVVLGTDSL 244

Query: 274 QERDQKALELITSFLEKK-----TLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
             R      L+      +     TL   + + +     T +   +   K  +  S+
Sbjct: 245 AARADATANLLQKGFTTQFPGNDTLGSLKPYGQGQDQVTDITADICSAKGAKIRSE 300


>gi|226323183|ref|ZP_03798701.1| hypothetical protein COPCOM_00955 [Coprococcus comes ATCC 27758]
 gi|225208373|gb|EEG90727.1| hypothetical protein COPCOM_00955 [Coprococcus comes ATCC 27758]
          Length = 425

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 142/291 (48%), Gaps = 10/291 (3%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+++++ +  Q+   K  DE + PAS+TK+MTL +IF+ L    +  +T++  S+ AA
Sbjct: 72  AESAVIMEASGGQVLLEKNADEKKPPASVTKVMTLLLIFDALADGTITPDTEVTTSEYAA 131

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S+++L+     T +  I  +   SAND   A  E I+GSE  F   M+ ++  +GM
Sbjct: 132 SMGGSQVFLEAGEKQTVDTMIKCIAVASANDACVAMAEKIAGSEPAFVEKMNQRSAGLGM 191

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-------- 223
            NT + N +GL  +  +TTARD A++   L   +PQ   Y +I      +          
Sbjct: 192 TNTHFVNCNGLDTEGHLTTARDIALMSRELITKYPQIEDYSTIWMENITHTTAKGSSEFG 251

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           ++N NKL+ +     G+KTG T  + F +  + R     ++AVVM  P S+ R + A+ +
Sbjct: 252 LSNTNKLIRQYEYATGLKTGSTSGAKFCLSATARKDGVNMIAVVMAEPDSKTRIKDAIAM 311

Query: 284 ITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
           +     K ++ +Q     + +    +K  +  K    T   F+ +D     
Sbjct: 312 LNYGFGKCSI-YQDEKALEKIVYAEVKHGMQEKAKGETLEGFRYVDTSGSD 361


>gi|121603114|ref|YP_980443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Polaromonas
           naphthalenivorans CJ2]
 gi|120592083|gb|ABM35522.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Polaromonas naphthalenivorans CJ2]
          Length = 402

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 93/319 (29%), Positives = 158/319 (49%), Gaps = 18/319 (5%)

Query: 14  FLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-D 72
           FL  P G   +     L+  +   +    + A ++      S +++DV  NQ+   K  D
Sbjct: 4   FLKAPAGLRGLAATFVLLVSVALPAAH--AQAPQVPEIAARSYLLLDVTANQILAAKDID 61

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
            P  PASLTK+MT Y++F+ L+SKK+ L     VS+ A     S++++  K     E  I
Sbjct: 62  SPVEPASLTKLMTEYLVFDALKSKKITLQQTFGVSQRAWKMPGSRMFIDPKMQVPVEDLI 121

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             +I +S ND + A  E + G+ + F  LM+ +AK +GM++T YKN  GL +   ITTAR
Sbjct: 122 KGMIVQSGNDATMALAEGVGGTAEHFVELMNQQAKALGMKSTSYKNPEGLTEAGHITTAR 181

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRII---TNHNKLLNKMHNIDGIKTGYTRNSG 249
           D +IL   L  +FP Y  Y +I+K+RY        TN N LL +   +DG+KTG+T  +G
Sbjct: 182 DLSILSTRLMSDFPDYIGYSAIKKYRYPGTPATNDTNRNTLLFRDPTVDGLKTGHTNAAG 241

Query: 250 FNIVTSLRY-----------KDDPIVAVVMGMPTSQERDQKALELITS-FLEKKTLKHQQ 297
           + ++ + +                ++A+V+G  +   R  ++ +L+   +   + +K   
Sbjct: 242 YCMIATAKREFPNLGAAGKPGGRRLLAIVLGTTSDSARATESQKLLNWGYTAFEAVKLFD 301

Query: 298 THRKDNLSSTSLKKSLMIK 316
             +     +    K  ++K
Sbjct: 302 AGQAVVTPAVWKGKDAVVK 320


>gi|308174134|ref|YP_003920839.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens DSM
           7]
 gi|307606998|emb|CBI43369.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
           [Bacillus amyloliquefaciens DSM 7]
 gi|328552733|gb|AEB23225.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens
           TA208]
 gi|328912469|gb|AEB64065.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
           [Bacillus amyloliquefaciens LL3]
          Length = 389

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/323 (24%), Positives = 161/323 (49%), Gaps = 20/323 (6%)

Query: 28  IQLMGKILFLSIIMISMASELHAKP-----------KYSSIVIDVNKNQMTGFKQD-EPR 75
           ++ +   L + I++ + A    AKP             S+++I+ +   +   K   E  
Sbjct: 1   MKRLISTLLIGILLTASAPSAFAKPDGKHTSELAHEAKSAVLIERDTGSILYNKNSRERL 60

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
            PAS+TK+MT+ +I E L    + ++ ++  S+ AA+   S+++L+     T ++ +  +
Sbjct: 61  APASMTKIMTMLLIMEALDKGNIKMSDKVRTSEHAASMGGSQIFLEPGEEMTVKEMLKGI 120

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
              S ND S A  E+I+GSE+ F   M+ KAK++G+++T +KN +GL +K   ++A D A
Sbjct: 121 AIASGNDASVAMAEYIAGSEEDFVSRMNKKAKELGLKDTSFKNPTGLPEKGHYSSAYDMA 180

Query: 196 ILGILLRKNFPQYYKYFSI-----RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
            +   L K + +  ++        R+   +   + N N+L+     +DG+KTG+T  + +
Sbjct: 181 KMAKELLK-YDKITQFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGFTGEAKY 239

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLK 310
            +  + +  +  ++AVV G  T +ER+ +  +++     +   K    ++++ +  +   
Sbjct: 240 CLTATAKKGNMRVIAVVFGASTPKERNAQVTKMLDYAFSQ--FKTHPLYKRNQIVGSVKV 297

Query: 311 KSLMIKKLKRTYSQFKKIDAKAH 333
           K    K +K T S+   + AK  
Sbjct: 298 KKGKQKLIKLTTSEPISLLAKKG 320


>gi|255284455|ref|ZP_05349010.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
           DSM 14469]
 gi|255265000|gb|EET58205.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
           DSM 14469]
          Length = 508

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/298 (27%), Positives = 138/298 (46%), Gaps = 12/298 (4%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A +  A    S+++++ +   +   K     R PAS+TK+MT  +IFE L+   L L+ +
Sbjct: 104 AEDTLALTSPSALLMEASSGTVLYEKDAHTRRSPASVTKIMTTLLIFEELEKGTLKLDDE 163

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           +  S  A +   S+++L+E    T +  +  ++  S ND S A  E I G+E +F   M+
Sbjct: 164 VVTSAHAKSMGGSQVFLEEGEKQTVDTLLKCILVSSGNDASVAMAEHIGGTEAEFVSRMN 223

Query: 164 NKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            KA ++GM +T +++  GL D  N  TTA D A++   L   FPQ Y Y +I      + 
Sbjct: 224 EKAAELGMADTHFEDCCGLTDSDNHYTTAYDIALMSRELITRFPQVYDYTTIWMDTITHV 283

Query: 223 I--------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                    + N NKLL       G+KTG T  + F +  +    D  +++VVM  P S+
Sbjct: 284 TRRGSSEFGLANTNKLLRSYDGCMGLKTGSTSKALFCVSATAVRNDIELISVVMAGPDSK 343

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
            R   A  ++     K  L          L   S+K+ +          +F+ +DA+ 
Sbjct: 344 TRFADAAAMLNYGFGKCRLYIDD--EPPELPHLSVKRGVEDTVSCHYAEEFRYLDAQG 399


>gi|320158294|ref|YP_004190672.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus MO6-24/O]
 gi|319933606|gb|ADV88469.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus MO6-24/O]
          Length = 387

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 76/274 (27%), Positives = 141/274 (51%), Gaps = 11/274 (4%)

Query: 26  RNIQLMGKILFLSIIMISM---ASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPA 78
           ++I  +   L  S++ +S     + +   P   +   +++D +  ++   K  D    PA
Sbjct: 2   KSIVSLTSALCASVMALSAHAAPTVIPDPPALGAKGYVLMDYHSGEVLVAKNADTQLNPA 61

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILAL 135
           SLTK+MT Y+  + +    +  + Q+ +S+ A  +N    SK++++  T  + E     L
Sbjct: 62  SLTKLMTAYVAGQEMNRGNIRFSDQVVISRNAWAKNFPDSSKMFIEVGTSVSLEDLYRGL 121

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I +S ND S A  E ++GS+  F  LM++ A K+G+QN+ + N  GL      +T RD A
Sbjct: 122 IIQSGNDASVAIAEHVAGSQDAFVSLMNSWADKLGLQNSAFTNPHGLDSTGLYSTPRDIA 181

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVT 254
            LG  + ++ P  Y  +S   F Y      N N LL  +   +DG+KTG+T  +G+++ T
Sbjct: 182 KLGQAIIRDLPSVYPMYSETSFTYNGITQYNRNGLLRDRSIAVDGMKTGFTSGAGYSLAT 241

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           S    +  +++VVMG  ++  R+ ++ +L++   
Sbjct: 242 SATSGNMRLISVVMGSNSTSSREAESKQLLSYGF 275


>gi|258542238|ref|YP_003187671.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633316|dbj|BAH99291.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636375|dbj|BAI02344.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639428|dbj|BAI05390.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642484|dbj|BAI08439.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645539|dbj|BAI11487.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648592|dbj|BAI14533.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651645|dbj|BAI17579.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654636|dbj|BAI20563.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 406

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/234 (33%), Positives = 127/234 (54%), Gaps = 2/234 (0%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + ++D N       K  DE   P+SLTKMMT Y+ F  L+S +L L+  +PVS+ A    
Sbjct: 68  ACILDYNSGATLLEKNADERMPPSSLTKMMTAYVTFGMLKSGRLKLDQMLPVSERAWRMQ 127

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S++++      + +  I  ++ +S ND      E ISGSE++F  LM++ A K+G+ N+
Sbjct: 128 GSRMFVPLGQSVSVQDLIQGMVIQSGNDACIVIAEGISGSEEQFVALMNDTATKLGLTNS 187

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            + NA+G   +N   +ARD A L + L  +FP+YY +FS ++F +      N N L+ K 
Sbjct: 188 HFMNATGWPAENHYMSARDVAYLALRLIHDFPEYYHFFSEKEFLFNKIRQENRNSLVVKG 247

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
              DG+KTG+T   GF +  S   +   +V  V G+P+S  R ++A  L+    
Sbjct: 248 L-ADGLKTGHTDAGGFGLCASSEREGRRVVLAVNGLPSSAARGREAERLMGWAF 300


>gi|167462561|ref|ZP_02327650.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus larvae
           subsp. larvae BRL-230010]
 gi|322381758|ref|ZP_08055712.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154146|gb|EFX46468.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 392

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/278 (28%), Positives = 144/278 (51%), Gaps = 13/278 (4%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKP------KYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           ++ L  ++LF +      A E   +         S+I++D +   +   K  D    PAS
Sbjct: 8   SLLLCSQLLFWTGFSYVHAEEKVPQQTDLTPNAKSAILLDADTGTIISEKDKDAKLPPAS 67

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MT+ +I E +    L ++ ++  S+ AA+   S+++L+     T E+ +  +   S
Sbjct: 68  ITKIMTMLLIMEAVDKGTLKMDEKVRTSEYAASMGGSQIFLEPGEEMTVEEMLKGIAMAS 127

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND S A  E I+G+E+ F  +M+ +AK++GM+NT + N +GL  +N  +TA D A++  
Sbjct: 128 GNDASVAMAEKIAGTEEDFVRMMNERAKQLGMKNTHFANCNGLPAENHYSTAYDIALMSR 187

Query: 200 LLRKN-----FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
            L K+     F   Y+ + +RK   +   + N NKL+   +  DG+KTG+T    F +  
Sbjct: 188 ELLKHEKITAFTGAYQDY-LRKDSEKPFWLVNTNKLVRFYNGADGLKTGFTSEEKFCLAA 246

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           + +  +  ++AVVMG P ++ R+ +  +L      + T
Sbjct: 247 TAKRDNLRMIAVVMGEPDTKTRNAEVTKLFDYSFSQYT 284


>gi|71898423|ref|ZP_00680595.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Ann-1]
 gi|71731736|gb|EAO33795.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Ann-1]
          Length = 347

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/286 (27%), Positives = 145/286 (50%), Gaps = 17/286 (5%)

Query: 59  IDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-- 115
           +D    Q+   +       PASLTK+MT Y+I   +++ K+H + Q+ +++ A  +    
Sbjct: 1   MDYASGQVLAGENIHTHLAPASLTKVMTSYVIAAEIKNGKVHRDDQVMMTENAWRKGGAG 60

Query: 116 ---SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S            E     +I +S ND + A  + ++GSE+ FA LM++ A++IGM+
Sbjct: 61  TDGSYSGFPVNKTARLEDMEQGMIVQSGNDAAIALAQHVAGSEEAFASLMNSYAQRIGMK 120

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           N+ + +A+GL  +   ++A D A+LG  L ++FP+ Y Y  +++        +N N LL 
Sbjct: 121 NSHFVDATGLSAEGHYSSAYDMALLGRALIRDFPETYAYNKVKELVVNGIKQSNRNLLLW 180

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS---FLE 289
           +  ++DGIKTG+T  +G+ I+ S +  D  I+ VVMG  + ++R + +L L+     F E
Sbjct: 181 RDPSVDGIKTGHTSEAGYCIINSAKRGDQRILTVVMGDVSEKKRAEDSLALLNWGFRFFE 240

Query: 290 KKTL--------KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
             TL        KH+    + +     + + L +   +  Y+  K 
Sbjct: 241 THTLYEPGKVVIKHKIWKGQVSEVQLGVPRPLFVTVQRGRYNDLKP 286


>gi|159185157|ref|NP_355279.2| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein)
           [Agrobacterium tumefaciens str. C58]
 gi|159140428|gb|AAK88064.2| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein)
           [Agrobacterium tumefaciens str. C58]
          Length = 431

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 98/265 (36%), Positives = 165/265 (62%), Gaps = 3/265 (1%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLY 87
             +  + F   I+   AS   A+  Y+  ++D N  ++   +  +   +PASLTKMMTLY
Sbjct: 12  AWVFALTFFCAILSLQAS--PAQAGYAHFIMDANTGKVLAARNADVLNHPASLTKMMTLY 69

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + FE L + +L  + +I +SK  A+  PSKLY+++   FT  + +  +I +SAND++   
Sbjct: 70  MTFEALHAGRLRWDQKITMSKNGASVIPSKLYVRQGQTFTVREAVYGMIVKSANDMAEGM 129

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
           G+ + GSE +FA +M+ KA+++GM  T+++NASGL  K+Q+TTARD A LG+ L+++FP+
Sbjct: 130 GDHLGGSEARFAEMMTRKARQLGMSKTVFRNASGLPSKSQVTTARDMARLGLALQRDFPK 189

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            Y  F++  F +R + I  HN L+ +   +DGIKTGYT  SGFN+V+++ +    +V VV
Sbjct: 190 EYGLFAMESFSFRGKRIRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAINHNGRRVVGVV 249

Query: 268 MGMPTSQERDQKALELITSFLEKKT 292
           +G  T++ RD +   L+   + + +
Sbjct: 250 LGGKTARSRDAQMAALLDKAVPQAS 274


>gi|241206582|ref|YP_002977678.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240860472|gb|ACS58139.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 377

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 94/311 (30%), Positives = 159/311 (51%), Gaps = 15/311 (4%)

Query: 26  RNIQLMGKILFLSIIMISMA------SELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPA 78
           R+ +L   +  LS +  + A      S   A P    I++DV   ++   ++     YPA
Sbjct: 4   RHFRLFAALRPLSFVSAATAVFLGSFSLAQANPH---ILVDVQTGRVLEHEEAFRKWYPA 60

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           SLTK+MT+Y +F+ +++ ++ L+T I +SK AA Q  +K+Y K     T +  +  L+ +
Sbjct: 61  SLTKLMTVYTVFDAIRAGQISLDTPIVMSKRAAAQPAAKMYFKPGQKLTLDSALKILMVK 120

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           SAND++ A  E I G+++ F   M+ +A K+GM ++ + N +GL  K Q TTARD A+L 
Sbjct: 121 SANDIAVAVAEAIGGTQEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLT 180

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
           + LR++FPQY  YFS+  F    + + + N L+ +    DG+KTG+   SGFN + S   
Sbjct: 181 VALRRDFPQYAGYFSLEGFTNGQQNVPSLNMLIGRFAGADGMKTGFICASGFNQIGSATR 240

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKK-----TLKHQQTHRKDNLSSTSLKKSL 313
               +V+VV+G  +   R      L+      +     TL   + +       T +   +
Sbjct: 241 NGRTLVSVVLGTDSLAARADATANLLQKGFTTQPASNDTLGSLRPYGVGQDQVTDISADI 300

Query: 314 MIKKLKRTYSQ 324
              K  +  S+
Sbjct: 301 CSAKGAKVRSE 311


>gi|221069456|ref|ZP_03545561.1| Serine-type D-Ala-D-Ala carboxypeptidase [Comamonas testosteroni
           KF-1]
 gi|220714479|gb|EED69847.1| Serine-type D-Ala-D-Ala carboxypeptidase [Comamonas testosteroni
           KF-1]
          Length = 390

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/258 (29%), Positives = 144/258 (55%), Gaps = 12/258 (4%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +   +  E+ A+   + +++DV   Q+ G K  D P   ASLTK+M+ Y++F+ L++KK+
Sbjct: 26  VAAPVPPEIAAR---NYLLVDVTAGQVLGAKDIDAPVEQASLTKLMSAYVVFDALRAKKI 82

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            L  ++PVS+ A     S++++  K        +  +I +S ND + A  E + G+ + F
Sbjct: 83  TLEQRMPVSERAWKMPGSRMFIDPKMQVPVNDLLSGMIIQSGNDATMALAEAVGGTAENF 142

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+++AK +GM+NT YKN  GL +   +TTARD +IL   L  +FP+Y  Y+S +++ 
Sbjct: 143 VKMMNDQAKALGMKNTSYKNPEGLTEPGHLTTARDLSILAQRLMHDFPEYMHYYSTKQYS 202

Query: 219 YRNRII---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-----KDDPIVAVVMGM 270
           Y        +N N LL +   +DG+KTG+T  +G+ +V + +          ++++V+G 
Sbjct: 203 YPGTPASNGSNRNALLFRDPTVDGLKTGHTNAAGYCLVATAKRDLPNVGQRRLLSIVLGT 262

Query: 271 PTSQERDQKALELITSFL 288
            + + R  ++ +L+    
Sbjct: 263 ASEKARANESQKLLNWGY 280


>gi|332097261|gb|EGJ02244.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella boydii 3594-74]
          Length = 268

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/262 (29%), Positives = 130/262 (49%), Gaps = 11/262 (4%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPAS 79
           + R +      LFL       A +    P     + I++D    ++      DE   PAS
Sbjct: 7   LLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPAS 66

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +      
Sbjct: 67  LTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNK 126

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL    Q +TARD
Sbjct: 127 DVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARD 186

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNI 252
            A+LG  L  + P+ Y     ++F +      N N+LL   + N+DG+KTG T  +G+N+
Sbjct: 187 MALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNL 246

Query: 253 VTSLRYKDDPIVAVVMGMPTSQ 274
           V S    D  +++VV+G  T +
Sbjct: 247 VASATQGDMRLISVVLGAKTDR 268


>gi|91224062|ref|ZP_01259325.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 12G01]
 gi|91190973|gb|EAS77239.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 12G01]
          Length = 390

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 76/267 (28%), Positives = 137/267 (51%), Gaps = 8/267 (2%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMT 85
               +  + + +  ++  A EL ++     +++D +  ++   +    R  PASLTK+MT
Sbjct: 15  GFAAVSSLAYAAPSVVPNAPELSSR---GYVLMDFHTGKVLVERDAHKRLNPASLTKLMT 71

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSAND 142
            Y+  + + +  + LN ++ +S+ A  +N    SK++++  T  +       LI +S ND
Sbjct: 72  AYVAGQEINTGNITLNDEVVISRNAWAKNFPDSSKMFIEVNTSVSLSDLYRGLIVQSGND 131

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            S A  E+++GSE  F  LM++ A K+ + NT + N  GL      +T  D A LG  + 
Sbjct: 132 ASVAIAEYVAGSESGFVSLMNSWAAKLELSNTAFTNPHGLDSDGLYSTPYDIAKLGQAII 191

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           ++ P  Y  +S   F Y      N N LL  +  N+DG+KTGYT  +G+++ TS    D 
Sbjct: 192 RDLPDIYPLYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYSLATSAIQGDM 251

Query: 262 PIVAVVMGMPTSQERDQKALELITSFL 288
            ++AVVMG  +   R+ ++ +L++   
Sbjct: 252 RLIAVVMGAKSENVRESESKQLLSYGF 278


>gi|261868788|ref|YP_003256710.1| DacC protein [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|293391084|ref|ZP_06635418.1| DacC protein [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|261414120|gb|ACX83491.1| DacC protein [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|290951618|gb|EFE01737.1| DacC protein [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 396

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/281 (27%), Positives = 148/281 (52%), Gaps = 14/281 (4%)

Query: 27  NIQLMGKILFLSIIMISMASELH---AKPKYSS---IVIDVNKNQMTGF-KQDEPRYPAS 79
            I ++  +L +S+  ++ A ++    A P+ ++   +++D N   +      D+ +YPAS
Sbjct: 10  KIAIVSGVLAVSLGAMA-AEDVQFNIAVPEINAQTYVLMDYNSGAVLASLNPDQRQYPAS 68

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALI 136
           LTKMMT Y++ + ++  K+     + + +++        SK++L      +       +I
Sbjct: 69  LTKMMTSYVVGQAIKQGKIRNTDMVTIGESSWGHKFPGSSKMFLNLNQQVSVADLHRGII 128

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND   A  E +SG+   F   M+   ++ G++NT +    GL + NQ ++ARD AI
Sbjct: 129 IVSGNDACVAMAEHVSGTVMNFVDTMNKYVEQFGLKNTYFTTVHGLDEDNQYSSARDMAI 188

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTS 255
           +G  + ++ P+ YK ++ + F +      N N LL  K  N+DG+KTG+T  +G+N+V S
Sbjct: 189 IGARIIRDLPEEYKIYAEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTDKAGYNLVAS 248

Query: 256 L-RYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLK 294
                +  +++VVMG+PT + R+ ++ +L+       +T K
Sbjct: 249 AISPNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETFK 289


>gi|163744788|ref|ZP_02152148.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanibulbus
           indolifex HEL-45]
 gi|161381606|gb|EDQ06015.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanibulbus
           indolifex HEL-45]
          Length = 491

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 93/262 (35%), Positives = 140/262 (53%), Gaps = 2/262 (0%)

Query: 32  GKILFLSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIF 90
           G  LF +  ++ +         Y++ VID    + +     D   +PASLTKMMTLYI F
Sbjct: 12  GLFLFAAFWVLVILPLSAMAAPYAAYVIDARTGKEIHAENADTRLHPASLTKMMTLYIAF 71

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           + ++  +L L+TQ+ +S+ AA++ PSKL ++          I A   +SAND +TA GE 
Sbjct: 72  QAVERGELSLDTQVTISQNAASEPPSKLGMRPGQKIALRYLIRAAAVKSANDAATAIGEA 131

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           I GSE  FA  M+  AK++GM  T +KN  GL +   ++TARD   +G  L  ++PQYY 
Sbjct: 132 IEGSEAAFARRMNRTAKQLGMTRTTFKNMHGLTENGHLSTARDMTAMGRHLLYDYPQYYN 191

Query: 211 YFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            FS        R +++ N + L      DGIKTGYTR +GFN+  S    ++ I+  V G
Sbjct: 192 LFSRITADAGVRKVSHTNRRFLGSYKGADGIKTGYTRAAGFNLTASAERGNERIIVTVFG 251

Query: 270 MPTSQERDQKALELITSFLEKK 291
             ++  R+ K  EL+     + 
Sbjct: 252 GNSTASRNAKVAELMDLGFRRA 273


>gi|121608233|ref|YP_996040.1| Serine-type D-Ala-D-Ala carboxypeptidase [Verminephrobacter
           eiseniae EF01-2]
 gi|121552873|gb|ABM57022.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Verminephrobacter eiseniae EF01-2]
          Length = 402

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 74/255 (29%), Positives = 136/255 (53%), Gaps = 9/255 (3%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           + A +       + I++DV  NQ+   K  D P   ASLTK+MT Y++F+ L+++K+ L 
Sbjct: 39  AQAPQPPEIAARAYILLDVTANQVLAAKNIDAPVEQASLTKLMTAYLVFDALRAEKISLQ 98

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
             +PVS+ A     S++++        E  +  +I +S ND + A  E +  + + F  L
Sbjct: 99  QNLPVSERAWKMPGSRMFIDPTMQVPVEDLLKGMIVQSGNDAAMALAEGVGATAENFVKL 158

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           M+ +AK +GMQ+T YKN  GL +   ++TARD  +L   L K+FPQ+  Y++ +++ Y  
Sbjct: 159 MNEQAKALGMQSTSYKNPEGLTEPGHLSTARDLGLLATRLMKDFPQHMHYYATKQYSYPG 218

Query: 222 RI---ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-----KDDPIVAVVMGMPTS 273
                  N N LL +   +DG+KTG+T  +G+ +V + +          ++++++G  + 
Sbjct: 219 TPASNANNRNTLLYRDPTVDGLKTGHTAAAGYCLVATAKREFPGLGQRRLLSIMLGAASE 278

Query: 274 QERDQKALELITSFL 288
             R  ++ +L+    
Sbjct: 279 SARANESQKLLNWGY 293


>gi|37676160|ref|NP_936556.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus YJ016]
 gi|37200701|dbj|BAC96526.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus YJ016]
          Length = 391

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 79/277 (28%), Positives = 139/277 (50%), Gaps = 17/277 (6%)

Query: 29  QLMGKILFLSIIMIS--MASELHAKP----------KYSSIVIDVNKNQMTGFKQ-DEPR 75
             M  I+ L+  + +  MA   HA P              +++D +  ++   K  D   
Sbjct: 3   AFMKSIVSLTSALCASVMAFSAHAAPTVIPDPPALGAKGYVLMDYHSGEVLVAKNADTQL 62

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGI 132
            PASLTK+MT Y+  + +    +  + Q+ +S+ A  +N    SK++++  T  + E   
Sbjct: 63  NPASLTKLMTAYVAGQEMNRGNIRFSDQVVISRNAWAKNFPDSSKMFIEVGTSVSLEDLY 122

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             LI +S ND S A  E ++GS+  F  LM++ A K+G+QN+ + N  GL      +T R
Sbjct: 123 RGLIIQSGNDASVAIAEHVAGSQDAFVSLMNSWADKLGLQNSAFTNPHGLDSTGLYSTPR 182

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFN 251
           D A LG  + ++ P  Y  +S   F Y      N N LL  +   +DG+KTG+T  +G++
Sbjct: 183 DIAKLGQAIIRDLPSVYPMYSETSFTYNGITQYNRNGLLRDRSIAVDGMKTGFTSGAGYS 242

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           + TS    +  +++VVMG  ++  R+ ++ +L++   
Sbjct: 243 LATSATSGNMRLISVVMGSNSTSSREAESKQLLSYGF 279


>gi|297181495|gb|ADI17682.1| d-alanyl-d-alanine carboxypeptidase [uncultured gamma
           proteobacterium HF0130_23I23]
          Length = 380

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 90/290 (31%), Positives = 155/290 (53%), Gaps = 12/290 (4%)

Query: 33  KILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYI 88
           K +FL+ + I++++ +   P     S I+ + N  ++      D P  PASLTK+MT Y+
Sbjct: 5   KFIFLTFLSINLSAAIPNPPDLGVGSYILYEPNTKKVLASFNADAPVEPASLTKLMTSYV 64

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           + +Y++   + L     +S  A     S+++++E T     + I  +I +S ND S A  
Sbjct: 65  VADYIKEDFIDLTDTPKISINAWKTPGSRMFIRESTKVPVSELIKGMIIQSGNDASVALA 124

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E ++GSE+ F+ LM+  A+++GM+NT + NASGL D   +T+A D A+L   L KNFP +
Sbjct: 125 EHVAGSEENFSYLMNEYARELGMENTSFNNASGLPDPLNVTSANDLAVLTGELIKNFPDH 184

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMH---NIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           Y+++S + F Y      N N+LL + +     DG+KTGYT ++G+ +V S       +VA
Sbjct: 185 YRHYSQKSFTYAGIAQKNRNQLLWRDNTSITFDGVKTGYTESAGYCLVGSAVKDGMRLVA 244

Query: 266 VVMGMPTSQERDQKALELI---TSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           VV+G    + R      L+     + + + L  +    K ++   + KK 
Sbjct: 245 VVLGSEDDK-RFNDVSNLMVYGFRYFKTEKLFEKNEPLK-SVQVIAGKKD 292


>gi|322832952|ref|YP_004212979.1| Beta-lactamase [Rahnella sp. Y9602]
 gi|321168153|gb|ADW73852.1| Beta-lactamase [Rahnella sp. Y9602]
          Length = 389

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 83/287 (28%), Positives = 141/287 (49%), Gaps = 15/287 (5%)

Query: 24  IQRNIQ--LMGKILFLSIIMISMAS-ELHAKP----KYSSIVIDVNKNQMTGF-KQDEPR 75
           ++R++   L   ++F +    ++A  +    P      S +++D     +      DE R
Sbjct: 1   MKRSVMSVLSCVLMFSAGSAKAIAPLDFPVVPPSIDAASFVLMDYASGDVLAAGNPDERR 60

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA------TQNPSKLYLKEKTYFTTE 129
            PASLTK+MT Y+I   L  KK+ ++  + V + A           S ++LK   + T  
Sbjct: 61  NPASLTKLMTGYVIDRALDHKKITMDDVVTVPQEAWVAGNKSLAGSSLMFLKPGDHVTVR 120

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
             I  +I  S ND   A  ++++GS+  F  +M+     +G+ NT ++   GL    Q T
Sbjct: 121 DLIRGIIITSGNDACVAMADYVAGSQDSFVGMMNQYVVSMGLTNTHFETVHGLDAPGQYT 180

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNS 248
           T+ D A L   +    P+ Y  ++ +   Y N    N N LL  K   +DG+KTG+T ++
Sbjct: 181 TSYDLAKLSRAIIGGEPEEYHMYAEKSLTYDNITQQNRNGLLWDKNLQVDGLKTGHTESA 240

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKH 295
           GFNI+ S    D  ++AVVMG  +S+ R+++A +L+T    + T K 
Sbjct: 241 GFNIIASATQGDRRLIAVVMGGKSSKGREEQARKLLTWGFREYTSKQ 287


>gi|326424426|ref|NP_763548.2| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus CMCP6]
 gi|319999816|gb|AAO08538.2| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus CMCP6]
          Length = 391

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 79/277 (28%), Positives = 139/277 (50%), Gaps = 17/277 (6%)

Query: 29  QLMGKILFLSIIMIS--MASELHAKP----------KYSSIVIDVNKNQMTGFKQ-DEPR 75
             M  I+ L+  + +  MA   HA P              +++D +  ++   K  D   
Sbjct: 3   AFMKSIVSLTSALCASVMAFSAHAAPTVIPDPPALGAKGYVLMDYHSGEVLVAKNADTQL 62

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGI 132
            PASLTK+MT Y+  + +    +  + Q+ +S+ A  +N    SK++++  T  + E   
Sbjct: 63  NPASLTKLMTAYVAGQEMNRGNIRFSDQVVISRNAWAKNFPDSSKMFIEVGTSVSLEDLY 122

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             LI +S ND S A  E ++GS+  F  LM++ A K+G+QN+ + N  GL      +T R
Sbjct: 123 RGLIIQSGNDASVAIAEHVAGSQDAFVSLMNSWADKLGLQNSAFTNPHGLDSTGLYSTPR 182

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFN 251
           D A LG  + ++ P  Y  +S   F Y      N N LL  +   +DG+KTG+T  +G++
Sbjct: 183 DIAKLGQAIIRDLPSVYPMYSETSFTYNGITQYNRNGLLRDRSIAVDGMKTGFTSGAGYS 242

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           + TS    +  +++VVMG  ++  R+ ++ +L++   
Sbjct: 243 LATSATSGNMRLISVVMGSNSTSSREAESKQLLSYGF 279


>gi|304407014|ref|ZP_07388668.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus
           curdlanolyticus YK9]
 gi|304344001|gb|EFM09841.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus
           curdlanolyticus YK9]
          Length = 398

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 136/266 (51%), Gaps = 8/266 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D +   +   K   +   PAS+TK+MT+ +I E L   +L L  ++  S+ A++ 
Sbjct: 50  SAVLMDADSGTVIFDKNSHDRLPPASITKIMTMLLIMEALDDGRLKLTDKVSASEYASSM 109

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+     + ++ I  +   S ND S A  E I GSE +F  +M+ KA+++GM++
Sbjct: 110 GGSQIFLEPGEEMSVDEMIKGIALASGNDASVAMAEKIGGSEAEFVKMMNEKAQQLGMKD 169

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI-----RKFRYRNRIITNHN 228
           T + N +GL   +  ++A D AI+   L K   Q  KY  +     RK   +   + N N
Sbjct: 170 THFANCNGLPVADHYSSAHDIAIMSRELLK-HTQITKYTGMYQDYLRKTSEKPFWLVNTN 228

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           KL+      DG+KTG+T  + F +  + R     ++AVVMG P ++ R+ +   ++    
Sbjct: 229 KLVWFYTGADGLKTGFTNEAKFCLSATARRDGLRVIAVVMGEPNTKTRNAEVSSMLDYSF 288

Query: 289 EKKTLKHQQTHRKDNLSSTSLKKSLM 314
            + +  +    + D +    ++K  +
Sbjct: 289 AQYS-NYSIFKQGDAIGKVKIEKGAV 313


>gi|319645178|ref|ZP_07999411.1| DacF protein [Bacillus sp. BT1B_CT2]
 gi|317392987|gb|EFV73781.1| DacF protein [Bacillus sp. BT1B_CT2]
          Length = 395

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/316 (25%), Positives = 161/316 (50%), Gaps = 27/316 (8%)

Query: 29  QLMGKILFLSIIMISMASELH----------AKPKYSSIVIDVNKNQMTGFKQD-EPRYP 77
           + + K+L  +II+++  S L           A    S+++I+ +  ++   K   E   P
Sbjct: 8   RHLSKLLIFTIILMTAPSALAKESAKKPSELADDAKSAVLIERDTGKVMYDKNSREKLPP 67

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MT+ +I E L   K+ +  ++  S+ AA+   S+++L+     T E  +  +  
Sbjct: 68  ASMTKVMTMLLIMEALDEGKIKMKDKVRTSEYAASMGGSQIFLEPGEEMTVEDMLKGIAI 127

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND S A  E I+GSE++F   M+ KA ++G+++T ++N +GL ++   +TA D A++
Sbjct: 128 GSGNDASVAMAEHIAGSEEEFVKRMNEKAAELGLKDTSFQNTTGLPEEGHYSTAYDMALM 187

Query: 198 GILLRK--NFPQYYKYFS--IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
              L K  N  ++   +   +R+   +   + N N+L+     +DG+KTG+T  + + + 
Sbjct: 188 AKELLKYENITKFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGFTNEAKYCLT 247

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSL 313
            S +  +  ++AVV G  T +ER+ +  +++     +      +TH          K++ 
Sbjct: 248 ASAKKGNMRVIAVVFGASTPKERNAQITKMLDFAFSQ-----YETH-------PMYKRNE 295

Query: 314 MIKKLKRTYSQFKKID 329
           +I  LK    + +KI+
Sbjct: 296 IISDLKVNKGREQKIN 311


>gi|297539773|ref|YP_003675542.1| beta-lactamase [Methylotenera sp. 301]
 gi|297259120|gb|ADI30965.1| Beta-lactamase [Methylotenera sp. 301]
          Length = 390

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 90/318 (28%), Positives = 162/318 (50%), Gaps = 18/318 (5%)

Query: 29  QLMGKILFLSIIMISMASELHAKPK-----YSSIVIDVNKNQMTGFKQDEPR-YPASLTK 82
             +     L+I  ++ A      P       + ++ D N N +   +    R  PASLTK
Sbjct: 15  TFLLSTTALAISSVAQAESAQIAPPPNLAVKAYLLKDFNSNYVIASQNSSMRIEPASLTK 74

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT Y+ F+ L++  L L   +PVS+ A     SK++++     T ++ +   I +S ND
Sbjct: 75  IMTAYLAFKALKNGHLSLTQTLPVSELAWKVEGSKMFIEPNKPVTVDELLHGTIIQSGND 134

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            S A  E I+G+E +FA +M+ +A ++GM+NT Y NA+GL D    TTA D A L   L 
Sbjct: 135 SSIALAEGIAGTEPQFADMMNKEAARLGMKNTHYMNATGLPDAQHFTTADDLATLAAALI 194

Query: 203 KNFP-QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           ++FP QY + +S++++ Y      N N+LL    N+DG+KTG+T  +G+ ++ S +    
Sbjct: 195 RDFPDQYQRLYSVKEYTYNKITQPNRNRLLWADPNVDGMKTGHTETAGYCLIASAKRDGT 254

Query: 262 PIVAVVMGMPTSQERDQKALELITSFLEK----------KTLKHQQTHRK-DNLSSTSLK 310
             ++VV+G PT   R  ++ +L+    +           +++   +  +  +N  ++++ 
Sbjct: 255 RRISVVLGAPTDSARASESQKLLNYGFQYFDSKLVYKQGQSINQLKVWKGTENQLASTVA 314

Query: 311 KSLMIKKLKRTYSQFKKI 328
             L +   K  Y+  K +
Sbjct: 315 NDLFVTVPKGDYANVKAV 332


>gi|261493869|ref|ZP_05990381.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261495135|ref|ZP_05991599.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261309205|gb|EEY10444.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261310471|gb|EEY11662.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 392

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 82/257 (31%), Positives = 148/257 (57%), Gaps = 10/257 (3%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A +++A+   + I++D N  ++      D+ +YPASLTKMMT Y++ E L+S K+  +  
Sbjct: 32  APQINAQ---TYILMDYNSGEVLVSLNPDQRQYPASLTKMMTSYVVGEALKSGKVQNSDM 88

Query: 104 IPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
           + V++ +  Q     S ++L   +  +  + +  LI  S ND S A  E +SGS+  F  
Sbjct: 89  VTVTENSWAQKFPGSSLMFLDLNSKVSVGELMKGLIIVSGNDASVALAEHVSGSQAAFIN 148

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
            M+  A++ G++NT +    GL D  Q ++ARD AI+G  + ++ P+ YK ++ ++F+Y 
Sbjct: 149 EMNKYAQQFGLKNTHFTTVHGLDDPEQYSSARDMAIIGSHIIRDQPEEYKIYAEKEFQYN 208

Query: 221 -NRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
             +   N N LL  K   +DG+KTG+T  +G+N+V S    +  +++VVMG+PT + R+ 
Sbjct: 209 IKKPQPNRNGLLWDKTIQVDGMKTGHTDKAGYNLVASAINPNTRLISVVMGVPTYKGREV 268

Query: 279 KALELITSFL-EKKTLK 294
           ++ +L+       +T+K
Sbjct: 269 ESKKLLQWGFANFETIK 285


>gi|148977058|ref|ZP_01813704.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium
           SWAT-3]
 gi|145963718|gb|EDK28979.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium
           SWAT-3]
          Length = 373

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 76/261 (29%), Positives = 134/261 (51%), Gaps = 8/261 (3%)

Query: 36  FLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFE 91
            +S   I+  S + A P   +   ++ID N   +   K       PASLTK+MT Y+  +
Sbjct: 1   MVSTAAIAAPSIVPAPPSLGAKGYVLIDFNSGDVLVEKNAHTKLNPASLTKLMTSYVAGQ 60

Query: 92  YLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            ++   +  + ++ +S+ A  +N    SK++++  T          LI +S ND S A  
Sbjct: 61  EMKRGNISADDKVRISENAWAKNFPDSSKMFIEVNTDVAMMDLYRGLIIQSGNDASVAIA 120

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E ++GS+  F  LM++ A  + ++NT + NA GL  ++  +T  D A+LG  + K+ P  
Sbjct: 121 EQVAGSQDAFVDLMNSWATSLKLENTHFANAHGLDAEDLYSTPYDIALLGRAIIKDLPDV 180

Query: 209 YKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           Y  +S R F Y      N N LL  +   +DG+KTGYT  +G+++ +S    +  ++AVV
Sbjct: 181 YGLYSERSFSYNGITQHNRNGLLRDRSLTVDGMKTGYTSGAGYSLASSATQGEMRLIAVV 240

Query: 268 MGMPTSQERDQKALELITSFL 288
           MG  + + R+  + +L++   
Sbjct: 241 MGASSVKSRESDSKQLLSYGF 261


>gi|322833272|ref|YP_004213299.1| Beta-lactamase [Rahnella sp. Y9602]
 gi|321168473|gb|ADW74172.1| Beta-lactamase [Rahnella sp. Y9602]
          Length = 403

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 75/256 (29%), Positives = 133/256 (51%), Gaps = 12/256 (4%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
             +A +++AK   S +++D N  ++      D    PASL+K+M  Y++ + ++S K+  
Sbjct: 32  APVAPQINAK---SWVLMDYNSGKILTESNPDARLDPASLSKIMVSYVVGQAIKSGKIKS 88

Query: 101 NTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
           +  + V   A        +  S ++LK        +    ++ +S ND S A  +F++GS
Sbjct: 89  DDLVSVGNDAWATGNPVLRGSSLMFLKPGDRVPVSELNKGIVIQSGNDASIALADFVAGS 148

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           +  F  LM+  A+++ +QNT +K   GL    Q T+A D A+L   L ++ P  Y     
Sbjct: 149 QDSFVNLMNRYAEQLKLQNTHFKTVHGLDADGQYTSATDMALLSQALIRDTPDEYALHKE 208

Query: 215 RKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYK-DDPIVAVVMGMPT 272
           ++F + +    N N+LL   + N+DGIKTGYT  +G+N+V+S        ++AVVMG P+
Sbjct: 209 KEFTFNHIKQINRNRLLWSSNLNVDGIKTGYTSGAGYNLVSSASDSTGMRLIAVVMGAPS 268

Query: 273 SQERDQKALELITSFL 288
            + R  ++  L+T   
Sbjct: 269 DRIRFNESESLLTWGF 284


>gi|222087386|ref|YP_002545923.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium
           radiobacter K84]
 gi|221724834|gb|ACM27990.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium
           radiobacter K84]
          Length = 388

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 89/303 (29%), Positives = 156/303 (51%), Gaps = 9/303 (2%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTL 86
           ++L+      S++ +S A    A P    +++D N  ++   ++     YPASLTK+MT 
Sbjct: 12  LRLVPMAAAASMLFLSTAEVADANPH---VLVDANTGRVLDHQEAFSKWYPASLTKLMTA 68

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y+ F  +QS ++ L+T + +SK A+ Q  +K+Y K     T +  +  ++ +SAND++ A
Sbjct: 69  YVTFRAIQSGQVSLDTPVVMSKLASAQPAAKMYFKPGQKMTLDNALKMMLVKSANDLAMA 128

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E I GS++ F   M+ +A ++GM +T + N +GL  + Q TTARD A+L + LR+ FP
Sbjct: 129 VSETIGGSQQGFVARMNAEAARLGMLDTHFINPNGLPGQGQYTTARDLAVLSVALRREFP 188

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           QY  YFS+  F    + + N N L+ +    DG+KTG+   +GFN + S       +++V
Sbjct: 189 QYAGYFSLEGFTNGVKQVPNINMLIGRYDGADGMKTGFICAAGFNQIASATRNGRTLISV 248

Query: 267 VMGMPTSQERDQKALELITSFLE-----KKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRT 321
           V+G  +   R   +   +    +     K TL + + +         L   +   K  + 
Sbjct: 249 VLGTDSLAARADDSANFLEKGFQNQFSGKDTLANLRPYGPGQDQVADLTAEICSAKGAKI 308

Query: 322 YSQ 324
            S+
Sbjct: 309 RSE 311


>gi|292487778|ref|YP_003530653.1| D-alanyl-D-alanine carboxypeptidase [Erwinia amylovora CFBP1430]
 gi|292899010|ref|YP_003538379.1| penicillin-binding protein 6 [Erwinia amylovora ATCC 49946]
 gi|291198858|emb|CBJ45968.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase)
           [Erwinia amylovora ATCC 49946]
 gi|291553200|emb|CBA20245.1| D-alanyl-D-alanine carboxypeptidase [Erwinia amylovora CFBP1430]
          Length = 402

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 76/254 (29%), Positives = 133/254 (52%), Gaps = 11/254 (4%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHL 100
           +  A +L AK   + I++D N +++      + R  PASLTKMM+ Y+I + L++ K+  
Sbjct: 33  MPAAPQLDAK---AWILMDYNSSKVLAEYNADLRLDPASLTKMMSSYVIGQALKAGKISK 89

Query: 101 NTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
           +  + V K A        +  S ++LK        +    ++ +S ND S A  ++++GS
Sbjct: 90  DDVVTVGKDAWATGNPVLKGSSLMFLKPGDRIAVSELNKGIVIQSGNDASIALADYVAGS 149

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           +  F  LM++  + +G++NT +K   GL    Q +TARD A++G  L ++ P  Y     
Sbjct: 150 QDAFVGLMNHYVQALGLKNTHFKTVHGLDANGQYSTARDMALIGQALIRDVPDEYALHKD 209

Query: 215 RKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           + F +      N N+LL   +  +DGIKTG+T  +G N+V S    D  I++VV+G  T 
Sbjct: 210 KAFTFNKIRQHNRNRLLWSTNLQVDGIKTGHTSGAGNNLVASAVDGDRRIISVVLGAATD 269

Query: 274 QERDQKALELITSF 287
             R +++ +L+   
Sbjct: 270 AVRFRESEKLLIWG 283


>gi|86359415|ref|YP_471307.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42]
 gi|86283517|gb|ABC92580.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42]
          Length = 360

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 87/297 (29%), Positives = 155/297 (52%), Gaps = 9/297 (3%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEY 92
           ++  +   ++  S + A P    I+++V   ++   ++     YPASLTK+MT+Y +F+ 
Sbjct: 1   MIAATAAFVASVSLVQANPH---ILVEVQTGRVLEHEEAFRKWYPASLTKLMTVYTVFDA 57

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           +++ ++ L+T I +SK AA Q  +K+Y K     T +  +  L+ +SAND++ A  E + 
Sbjct: 58  IRAGQISLDTPIVISKRAAAQPAAKMYFKPGQKLTLDSALKILMVKSANDIAVAVAEAVG 117

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           G+++ F   M+ +A K+GM ++ + N +GL  K Q TTARD A+L + LR++FPQY  YF
Sbjct: 118 GTQEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALRRDFPQYASYF 177

Query: 213 SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           ++  F    + + N N L+ +    DG+KTG+   SGFN + S       +V+VV+G  +
Sbjct: 178 ALEGFTTGQQNVPNLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRTLVSVVLGTDS 237

Query: 273 SQERDQKALELITSFLEKK-----TLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
              R      L+      +     TL   + +       T +   +   K  +  S+
Sbjct: 238 LAARADATANLLQKGFTTQFPGSDTLGSLKPYGPGQDQVTDITADICSAKGAKIRSE 294


>gi|332654526|ref|ZP_08420269.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium
           D16]
 gi|332516490|gb|EGJ46096.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium
           D16]
          Length = 383

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 143/292 (48%), Gaps = 8/292 (2%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK---PKYSSIVIDVNKNQMTGFKQDEP-RYPAS 79
           ++R   L+  +L L+    +  +   +       S+++++     +   K+ +    PAS
Sbjct: 1   MKRIGSLVLAVLLLTGTASAQEAAAQSPLELSAPSAVLVEKETGTILYEKEAKRQMEPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MTL +I E L S ++     + VS  AA    S++YLKE    T  + I  +   S
Sbjct: 61  VTKVMTLLLIMEALDSGRISREDVVTVSARAAGMGGSQVYLKEGEQMTVGELIKCITVVS 120

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND + A  E+++GSE  F   M+ +A+K+GM++T + N +GL     +TTA D A++  
Sbjct: 121 GNDATVAMAEYLAGSESAFVQQMNQRAQKLGMEDTNFVNCTGLPASGHVTTAYDIALMSR 180

Query: 200 LLRKNFPQYYKYFSIRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
            L  N P   +Y +I     R+    +TN N+L+       G+KTG T ++ + +  +  
Sbjct: 181 ELILNHPGIREYTTIWMDSIRDGAFGLTNTNRLVRFYEGATGLKTGSTDSALYCMSATAE 240

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSL 309
                ++AVVM  PT+ +R + A  ++       TL   Q + +  L+   +
Sbjct: 241 RDGMELIAVVMAAPTAADRFEDAKAMLDYGFGAYTLM--QVYPESPLAPIPV 290


>gi|299530593|ref|ZP_07044011.1| serine-type D-Ala-D-Ala carboxypeptidase [Comamonas testosteroni
           S44]
 gi|298721416|gb|EFI62355.1| serine-type D-Ala-D-Ala carboxypeptidase [Comamonas testosteroni
           S44]
          Length = 390

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 77/258 (29%), Positives = 144/258 (55%), Gaps = 12/258 (4%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +   +  E+ A+   + +++DV   Q+ G K  D P   ASLTK+M+ Y++F+ L+SKK+
Sbjct: 26  VAAPVPPEIAAR---NYLLVDVTAGQVLGAKDVDAPVEQASLTKLMSAYVVFDALRSKKI 82

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            L  ++PVS+ A     S++++  K        +  +I +S ND + A  E + G+ + F
Sbjct: 83  TLEQRMPVSERAWKMPGSRMFIDPKMQVPVNDLLSGMIIQSGNDATMALAEAVGGTAENF 142

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             +M+++AK +GM+NT YKN  GL +   +TTARD +IL   L  +FP+Y  Y++ +++ 
Sbjct: 143 VKMMNDQAKALGMKNTSYKNPEGLTEPGHLTTARDLSILAQRLMHDFPEYMHYYATKQYS 202

Query: 219 YRNRII---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-----KDDPIVAVVMGM 270
           Y        +N N LL +   +DG+KTG+T  +G+ +V + +          ++++V+G 
Sbjct: 203 YPGTPASNGSNRNALLFRDPTVDGLKTGHTNAAGYCLVATAKRDLPNVGQRRLLSIVLGT 262

Query: 271 PTSQERDQKALELITSFL 288
            + + R  ++ +L+    
Sbjct: 263 ASEKARANESQKLLNWGY 280


>gi|52786237|ref|YP_092066.1| DacF [Bacillus licheniformis ATCC 14580]
 gi|163119526|ref|YP_079656.2| penicilin binding protein [Bacillus licheniformis ATCC 14580]
 gi|52348739|gb|AAU41373.1| DacF [Bacillus licheniformis ATCC 14580]
 gi|145903033|gb|AAU24018.2| penicilin binding protein (putative D-alanyl-D-alanine
           carboxypeptidase) [Bacillus licheniformis ATCC 14580]
          Length = 390

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/316 (25%), Positives = 161/316 (50%), Gaps = 27/316 (8%)

Query: 29  QLMGKILFLSIIMISMASELH----------AKPKYSSIVIDVNKNQMTGFKQD-EPRYP 77
           + + K+L  +II+++  S L           A    S+++I+ +  ++   K   E   P
Sbjct: 3   RHLSKLLIFTIILMTAPSALAKESAKKPSELADDAKSAVLIERDTGKVMYDKNSREKLPP 62

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MT+ +I E L   K+ +  ++  S+ AA+   S+++L+     T E  +  +  
Sbjct: 63  ASMTKVMTMLLIMEALDEGKIKMKDKVRTSEYAASMGGSQIFLEPGEEMTVEDMLKGIAI 122

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND S A  E I+GSE++F   M+ KA ++G+++T ++N +GL ++   +TA D A++
Sbjct: 123 GSGNDASVAMAEHIAGSEEEFVKRMNEKAAELGLKDTSFQNTTGLPEEGHYSTAYDMALM 182

Query: 198 GILLRK--NFPQYYKYFS--IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
              L K  N  ++   +   +R+   +   + N N+L+     +DG+KTG+T  + + + 
Sbjct: 183 AKELLKYENITKFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGFTNEAKYCLT 242

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSL 313
            S +  +  ++AVV G  T +ER+ +  +++     +      +TH          K++ 
Sbjct: 243 ASAKKGNMRVIAVVFGASTPKERNAQITKMLDFAFSQ-----YETH-------PMYKRNE 290

Query: 314 MIKKLKRTYSQFKKID 329
           +I  LK    + +KI+
Sbjct: 291 IISDLKVNKGREQKIN 306


>gi|85707408|ref|ZP_01038489.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius sp.
           217]
 gi|85668064|gb|EAQ22944.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius sp.
           217]
          Length = 480

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 95/262 (36%), Positives = 148/262 (56%), Gaps = 2/262 (0%)

Query: 32  GKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIF 90
           G ++  +  M+ +     A   Y+++V+D    ++      D   +PASLTKMMTLY++F
Sbjct: 12  GLVVMATFWMLIIVPLSAAAAPYAALVMDARSGEVLYSNNADTRLHPASLTKMMTLYVVF 71

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           E +++ ++ L+ ++ +SK AA++ PSKL ++  +       I A   +SAND +TA GE 
Sbjct: 72  EAIENGEIGLDDKVLISKHAASEPPSKLGVRAGSSIALRYLIRAAAVKSANDAATALGEA 131

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           I GSE +FA  M+  A+ +GM  T +KNA GL +   ++TARD +ILG  L  +FPQYY 
Sbjct: 132 IEGSEAQFARRMNRTAESLGMSRTTFKNAHGLTENGHLSTARDMSILGRHLFYDFPQYYN 191

Query: 211 YFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            FS          +++ N +LL      DGIKTGYTR +GFN+  S     + I+A V G
Sbjct: 192 LFSRITTDAGVTSVSHTNRRLLEAYRGADGIKTGYTRAAGFNLTASAERNGERIIATVFG 251

Query: 270 MPTSQERDQKALELITSFLEKK 291
             ++  R+ K  EL+    +K 
Sbjct: 252 GQSTASRNAKVAELLDLGFKKA 273


>gi|210615757|ref|ZP_03290738.1| hypothetical protein CLONEX_02956 [Clostridium nexile DSM 1787]
 gi|210150093|gb|EEA81102.1| hypothetical protein CLONEX_02956 [Clostridium nexile DSM 1787]
          Length = 401

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 82/285 (28%), Positives = 148/285 (51%), Gaps = 11/285 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+++++V+  ++   K  DE   PAS+TK+MTL +IF+ L+ +K+ L   + VS+ AA+ 
Sbjct: 50  SAVLMEVSTGKVIYEKAADEQLPPASVTKVMTLLLIFDALEDEKIKLTDIVSVSEYAASM 109

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+     T +  I  +   SAND   A  E I GSE++F   M+ +AK++GM++
Sbjct: 110 GGSQVFLEPGETQTVDTMIKCIAVASANDACVAMAEHIWGSEEEFVAKMNARAKELGMEH 169

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--------IT 225
           T + N +GL     +TTARD A++   L   +P+ + Y +I      +          + 
Sbjct: 170 TNFLNCNGLDADGHVTTARDIALMSRELITRYPKIHDYSTIWMENITHTTKKGTTEFGLA 229

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N NKL+ +     G+KTG T  + F +  + +  D  ++AV+M  P  + R + A  L+ 
Sbjct: 230 NTNKLIRQYQYATGLKTGSTSKAKFCLSATAKKDDLELIAVIMAAPDPKARFKDATTLLN 289

Query: 286 SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
               K T K++ T   + L    ++  +  +      ++F+ ID 
Sbjct: 290 YGFGKCT-KYKDTTPFE-LEPLKIRGGIEKEMPVAVETEFQYIDT 332


>gi|220931542|ref|YP_002508450.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halothermothrix orenii H
           168]
 gi|219992852|gb|ACL69455.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halothermothrix orenii H
           168]
          Length = 397

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 77/247 (31%), Positives = 130/247 (52%), Gaps = 9/247 (3%)

Query: 53  KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++++ VN  ++   K       PAS+TK+MT+ ++ E L+  +  L   I VS+ AA
Sbjct: 39  AKSALLMQVNTGEILYEKNPHQKLPPASMTKIMTMLLVMEALEDGRASLRDSIIVSERAA 98

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S++YL+     T E  + A+   SAND   A  E++ G+E+ F   M+ KA+++G 
Sbjct: 99  SMGGSQVYLEPGEEMTLEDLMKAIAIASANDACVAVAEYLYGTEEDFVKKMNEKARELGC 158

Query: 172 QNTIYKNASGLHD-----KNQITTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRII 224
           +NT + N +GL       +   T+A D AI+   L K +P+  K+ S      R    ++
Sbjct: 159 KNTYFYNTNGLPPGDPSVEGNYTSAYDLAIMSRELLK-YPEVLKWTSTWIDYLRDGEFVL 217

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            N N+L+     +DGIKTGYT  + F + T+        +AV+MG  TS+ R ++A +L+
Sbjct: 218 NNTNRLVRHYKGVDGIKTGYTEEAKFCVATTAARNGIRFIAVIMGADTSKARFKEAAQLL 277

Query: 285 TSFLEKK 291
           +    K 
Sbjct: 278 SYGFSKY 284


>gi|157825663|ref|YP_001493383.1| penicillin-binding protein dacF precursor [Rickettsia akari str.
           Hartford]
 gi|157799621|gb|ABV74875.1| penicillin-binding protein dacF precursor [Rickettsia akari str.
           Hartford]
          Length = 306

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 102/278 (36%), Positives = 157/278 (56%), Gaps = 7/278 (2%)

Query: 30  LMGKILFLSIIMISMASELHA------KPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
           L+  I  ++     ++    A       P  +S+VID    ++      +   YPASLTK
Sbjct: 6   LLPYIFIVTFFFAPISEAKKAVKNTPKPPVQTSLVIDAKSGKVLQAHNSQIRVYPASLTK 65

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MTLY++FE ++  KL L+ ++ VS+ A+   P KL LK     T  + I  LI +SAND
Sbjct: 66  LMTLYLMFEAIEDGKLSLDQKLLVSQKASKMPPCKLGLKAGETITVREAINGLIIKSAND 125

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            +    E + GSEK FA LM+ KAK++GM+NT +KNASG HD  Q+TTARD A L + L+
Sbjct: 126 AAVTVAEGMKGSEKAFAHLMNIKAKQLGMKNTYFKNASGWHDPLQLTTARDMAKLTMALK 185

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           K++P+YY  FS   F +R  I+  HN++       +G+KTG+   +G+N+VT+       
Sbjct: 186 KDYPKYYPLFSKTSFVFRGNIVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKS 245

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           ++AVV G  ++  RDQK + L+      K + H+   +
Sbjct: 246 LIAVVTGGKSAASRDQKMMWLLDQHFNIKPIVHKPLIK 283


>gi|254438085|ref|ZP_05051579.1| D-alanyl-D-alanine carboxypeptidase family [Octadecabacter
           antarcticus 307]
 gi|198253531|gb|EDY77845.1| D-alanyl-D-alanine carboxypeptidase family [Octadecabacter
           antarcticus 307]
          Length = 471

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 92/273 (33%), Positives = 149/273 (54%), Gaps = 5/273 (1%)

Query: 24  IQRNIQ---LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           ++R IQ   L G +L  +++M ++A        Y+++V+D    ++   +  D   +PAS
Sbjct: 1   MKRRIQHPALAGILLLFTLLMAALAPVTGNSAPYAAMVMDARTGEILHSRNADTQLHPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LTKMMTLYI F+ ++  ++ L+  I ++  AA++  SKL+L           I A   +S
Sbjct: 61  LTKMMTLYIAFQAVERGEISLDDMITITPLAASEPASKLWLAAGQRIQFRYLIRASGVKS 120

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AND +TA G  + G+E  FA  M+  A+ +GM  T ++NA GL +   ++TARD  +LG 
Sbjct: 121 ANDAATAIGIALEGNEAAFARRMTATARAMGMSRTTFRNAHGLTETGHMSTARDMTVLGR 180

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
            +  +FPQYY  FS          ++N N + LN     DGIKTGYTR +GFN+V S   
Sbjct: 181 HMIYDFPQYYNIFSRLTTDAGVSQVSNTNRRFLNAYRGADGIKTGYTRAAGFNLVASAER 240

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
             + I+A + G  ++ +R+ +  EL+     + 
Sbjct: 241 GQERIIATMFGGTSTAQRNARVAELLDMGFARA 273


>gi|149914154|ref|ZP_01902685.1| Serine-type D-Ala-D-Ala carboxypeptidase [Roseobacter sp. AzwK-3b]
 gi|149811673|gb|EDM71506.1| Serine-type D-Ala-D-Ala carboxypeptidase [Roseobacter sp. AzwK-3b]
          Length = 388

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 79/268 (29%), Positives = 142/268 (52%), Gaps = 11/268 (4%)

Query: 39  IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKK 97
           I+++S A+    +   S+ V D+    +   K  D P  PAS++K+MTLY+ FE ++  +
Sbjct: 15  IVLVSPAAAFDTR-ATSAFVFDMKTGTVLLSKNADAPLPPASMSKLMTLYVTFEAIRDGR 73

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS--GSE 155
           L L+ ++PVS+ A +   S ++L        E  +  +I  S ND      E +S  G+E
Sbjct: 74  LSLDDRLPVSQHAMSFGGSTMFLDTTDRVRVEDLLRGIIVLSGNDACVVLAEALSPDGTE 133

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           + FA  M+ +A+++GM N+ + N+SG        + RD A+L   + ++FP++Y  F+  
Sbjct: 134 QGFARYMTQRAQQMGMTNSTFMNSSGWPAAGHRMSMRDLALLSRHIIEDFPEFYPMFAET 193

Query: 216 KFRYRNR---IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           KF +  R      N N +L      DG+KTG+T+ +G+ +V S +  D  ++ V+ G+ T
Sbjct: 194 KFEFDGRAPQNTRNRNPILGLGIGADGLKTGHTQEAGYGLVGSAKQGDRRVIFVISGLET 253

Query: 273 SQERDQKALELITS----FLEKKTLKHQ 296
            Q R +++  ++      F+EK  +K  
Sbjct: 254 RQARAEESEAIVNWSFRQFVEKSVVKAG 281


>gi|153810795|ref|ZP_01963463.1| hypothetical protein RUMOBE_01179 [Ruminococcus obeum ATCC 29174]
 gi|149833191|gb|EDM88273.1| hypothetical protein RUMOBE_01179 [Ruminococcus obeum ATCC 29174]
          Length = 422

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 83/281 (29%), Positives = 138/281 (49%), Gaps = 15/281 (5%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           +   EL A    S+++++    Q    K  D  R PAS+TK+MTL +IF++L +  + L 
Sbjct: 61  TSGPELSAP---SAVLMEAETGQFVYAKDKDTRRSPASVTKIMTLILIFDHLHAGDISLT 117

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
             +  S  A +   S+++L+E    T E  I  ++  S ND S A  EFISGSE++F   
Sbjct: 118 DPVTTSAHAKSMGGSQVFLEEGEIQTVETLIKCIVIASGNDASVAMAEFISGSEQEFVAQ 177

Query: 162 MSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFR-- 218
           M+ +A ++GM+NT + +  GL D     TTA D AI+   L   +P+   Y SI      
Sbjct: 178 MNLRADRLGMKNTHFIDCCGLTDSDEHYTTANDIAIMSRELIVKYPKILDYSSIWMETII 237

Query: 219 ------YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
                  +   +TN N+L+       G+KTG T  +GF +  +       +++VVM  P 
Sbjct: 238 HETSQGIKEFGLTNTNRLIRTYPGCRGLKTGSTSKAGFCLSATAERNSLKLISVVMAAPD 297

Query: 273 SQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSL 313
            + R + A  L+     + ++    T   ++L +  +K+ L
Sbjct: 298 YKARLKDAAALLDYGFSRCSIYEDNTP--ESLPAIPVKRGL 336


>gi|84500362|ref|ZP_00998611.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanicola
           batsensis HTCC2597]
 gi|84391315|gb|EAQ03647.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanicola
           batsensis HTCC2597]
          Length = 477

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 98/257 (38%), Positives = 145/257 (56%), Gaps = 3/257 (1%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           +  +      E  A P Y+++V+D    ++      D   +PASLTKMMTLYI FE +++
Sbjct: 1   MVFVANPAMREAQAAP-YAAMVMDARSGEVLHSSNADARLHPASLTKMMTLYIAFEAVRN 59

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
            ++ L+T + +S+ AA + PSKL L   +       I A   +SAND +TA GE I GSE
Sbjct: 60  GEITLDTPVRISRNAAAEPPSKLGLAAGSKIKLRYLIRASAVKSANDAATAIGEAIEGSE 119

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
            +FA  M+  AK +GM  T +KNA GL +   ++TARD  ILG  L  ++P+YY  FS  
Sbjct: 120 ARFARRMTRTAKALGMTRTTFKNAHGLTESGHLSTARDMTILGRHLLFDYPEYYNLFSRV 179

Query: 216 KFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           +     + ++N N +LL      DGIKTGYTR +GFN+V S    ++ I+A V G  +S 
Sbjct: 180 QTHAGIKKVSNTNRRLLGSYRGADGIKTGYTRAAGFNLVASAERGNERIIATVFGGRSSA 239

Query: 275 ERDQKALELITSFLEKK 291
            R+ K  EL+    ++ 
Sbjct: 240 SRNAKVAELLDLGFKRA 256


>gi|209551182|ref|YP_002283099.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209536938|gb|ACI56873.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 377

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 93/307 (30%), Positives = 162/307 (52%), Gaps = 9/307 (2%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQD-EPRYPASLTK 82
           + +L   +  LS    + A  L + P  ++   I++DV   ++   ++     YPASLTK
Sbjct: 5   HFRLFAALRPLSFAAAATAGFLASVPLAAANPHILVDVQTGRVLEHEEAFRKWYPASLTK 64

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT+Y +F+ +++ ++ L+T + +SK AA Q  +K+Y K     T +  +  L+ +SAND
Sbjct: 65  LMTVYTVFDAIRAGQISLDTPVVMSKRAAAQPAAKMYFKPGQKLTLDSALKILMVKSAND 124

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
           ++ A  E I G+++ F   M+ +A K+GM ++ + N +GL  K Q TTARD A+L + LR
Sbjct: 125 IAVAVAEAIGGTQEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALR 184

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           ++FPQY  YF++  F    + + + N L+ +    DG+KTG+   SGFN + S       
Sbjct: 185 RDFPQYASYFALEGFTNGQQNVPSLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRT 244

Query: 263 IVAVVMGMPTSQERDQKALELI-----TSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKK 317
           IV+VV+G  +   R      L+     T F   +TL   + + +     T +   +   K
Sbjct: 245 IVSVVLGTDSLAARADATANLLQKGFTTQFPGNETLGSLRPYGQGQDQVTDISADICSAK 304

Query: 318 LKRTYSQ 324
             +  S+
Sbjct: 305 GAKIRSE 311


>gi|167040194|ref|YP_001663179.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X514]
 gi|256752060|ref|ZP_05492928.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300914278|ref|ZP_07131594.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X561]
 gi|307724486|ref|YP_003904237.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X513]
 gi|166854434|gb|ABY92843.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X514]
 gi|256749070|gb|EEU62106.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300889213|gb|EFK84359.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X561]
 gi|307581547|gb|ADN54946.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X513]
          Length = 381

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 93/323 (28%), Positives = 164/323 (50%), Gaps = 10/323 (3%)

Query: 22  IYIQRNIQLMGKILFLSIIM--ISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPA 78
           ++ +    L+  IL +S ++     A  L+ K K S+I+I+ N  Q+   K    P  PA
Sbjct: 1   MFKRLLTLLVSVILAISFVLNGTVYADTLNLKSK-SAILIETNTGQILYEKDSHKPLPPA 59

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           S+TK+MTL +  E + S K+ +  ++  SK A     +++YL+     T +  + A+   
Sbjct: 60  SVTKVMTLLLAIEAIDSGKIKITDKVVTSKHAFDMGGTQIYLEVGEEMTVDDLMKAIAMN 119

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           SAND S A  E+I+G+E+ F  +M+ +AK++G +NT +KNA+GL ++  +T+  D A++ 
Sbjct: 120 SANDASVALAEYIAGTEENFVEMMNKRAKELGAKNTTFKNATGLPEEGHLTSVYDIAMIS 179

Query: 199 ILLRKNFPQYYKYFSIR--KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
             L K     +KY + +    R     + N NKLL +   +DGIKTG T  + + +  + 
Sbjct: 180 RELVK-HESIFKYLTNKLDSLRNGKFSLINTNKLLWRYKGVDGIKTGSTSEALYCMAATA 238

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLK-HQQTHRKDNLSSTSLKKSLM 314
           +  D  ++AVV G P S+ R  +A +L+       +++K   +     N+     K+  +
Sbjct: 239 KRGDTRLIAVVFGAPDSETRFSEAAKLLDYGFANYESVKVASKGQSFGNVKVLKGKREAV 298

Query: 315 IKK-LKRTYSQFKKIDAKAHSTQ 336
                   Y   KK + K   T+
Sbjct: 299 SVVCRDDEYILIKKGEGKNIKTE 321


>gi|13473090|ref|NP_104657.1| penicillin-binding protein [Mesorhizobium loti MAFF303099]
 gi|14023838|dbj|BAB50443.1| penicillin-binding protein [Mesorhizobium loti MAFF303099]
          Length = 389

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 88/298 (29%), Positives = 155/298 (52%), Gaps = 8/298 (2%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMM 84
           R+   +      +I++  +A    A P    +V D+   Q+   +   +  YPASL+K+M
Sbjct: 2   RHRHFLKLFSAGAIMLSVLAGSALANPV---VVFDLKNGQILQHQDAFKRWYPASLSKLM 58

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T Y+ F  + + ++ L++ I V+K +A + PSK+  K  +    +  +  ++ +SAND++
Sbjct: 59  TAYVTFRAIAAGEVQLDSPIKVTKHSAGEPPSKMGFKPGSVMRLDNALKMMLVKSANDIA 118

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A GE + GS+  FA  M+ +A ++GM  T + N +GL+  +Q TTARD ++L + +R+ 
Sbjct: 119 MAVGENVGGSQAAFAERMNAEAARLGMNGTHFVNPNGLYSPDQYTTARDLSVLVMAIRRE 178

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           FPQY  +FSI       + I N+N L+ +    DG+KTG+   SGFN++ S       +V
Sbjct: 179 FPQYAPWFSIEGLAVGKKAIPNYNLLIGRYPGADGMKTGFVCPSGFNMIGSATRNGRTLV 238

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKTLKHQQT----HRKDNLSSTSLKKSLMIKKL 318
           AVV+G  ++  R + A +L+    +  T             D +S   +   +  KK 
Sbjct: 239 AVVLGEKSAVSRAEAAAKLLDQGFDTPTAGSATVATLAPYGDTVSPNDMHDEICKKKK 296


>gi|294788907|ref|ZP_06754147.1| serine-type D-Ala-D-Ala carboxypeptidase [Simonsiella muelleri ATCC
           29453]
 gi|294483009|gb|EFG30696.1| serine-type D-Ala-D-Ala carboxypeptidase [Simonsiella muelleri ATCC
           29453]
          Length = 411

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 83/256 (32%), Positives = 138/256 (53%), Gaps = 2/256 (0%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           +       + +V D+  NQ+   K  D+   PASLTK+MT YI+F+ L   KL     + 
Sbjct: 55  DAPTIAATAYLVKDLQSNQILASKDIDKSIEPASLTKVMTAYIVFKNLNEGKLKPEQMLK 114

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           VS+ A     S+++L+ K   +    I  LI  S ND +    E +SGSE KF  LM+ +
Sbjct: 115 VSEKAWKVEGSRMFLEMKKPVSVADLIKGLIVHSGNDAAITLAEGLSGSEAKFVDLMNAE 174

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
           AK++GM  T ++N +GL     +TT +D   L   +  +FP YYK +S+++F Y      
Sbjct: 175 AKRLGMNQTHFENTTGLPSPKHLTTVQDLMTLSDAIIHDFPDYYKIYSLKEFTYNGIKQP 234

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N N LL +  ++DG+KTG+T ++G+N++ S +     +V++V+G  + + R  ++ +L+ 
Sbjct: 235 NRNLLLFRDPSVDGMKTGHTSSAGYNLIASSKRNGRRVVSIVVGTASQEARATESSKLLN 294

Query: 286 SFL-EKKTLKHQQTHR 300
             L    T K  Q  +
Sbjct: 295 FALQNFDTPKMYQAGQ 310


>gi|71279808|ref|YP_268450.1| D-alanyl-D-alanine carboxypeptidase [Colwellia psychrerythraea 34H]
 gi|71145548|gb|AAZ26021.1| D-alanyl-D-alanine carboxypeptidase [Colwellia psychrerythraea 34H]
          Length = 399

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 89/295 (30%), Positives = 154/295 (52%), Gaps = 14/295 (4%)

Query: 2   LQQKIQSSAKKT---FLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIV 58
           + +KI+ S K +      +  G+++    + +       +I +I  A +++AK     I+
Sbjct: 1   MTKKIKFSGKYSTNKVFAFFTGALFSTAIVLIPAA---HAITIIPDAPQINAK---GFIL 54

Query: 59  IDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---N 114
           ID    ++   +  D    PASLTK+MT YII + L++  +    ++ +S+ A  +   +
Sbjct: 55  IDYTTGKIIAEENADTQLAPASLTKIMTSYIIGKELENGNIKNTDKVMISEKAWAKKFPD 114

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            SK++++  T          +I  S ND   A  E I+GSE  FA LM+  A+++GM ++
Sbjct: 115 SSKMFIEVGTEVPVSLLNQGIIVASGNDACVAMAEHIAGSESAFADLMNAHAEQLGMSSS 174

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-K 233
            ++N+ GL   + +TT RD A L I L +  P+ Y  +  + F Y N    N N LL  K
Sbjct: 175 FFENSHGLDSTSHMTTPRDMATLAIALIREVPEEYAIYKQKSFTYNNIKQYNRNGLLWDK 234

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
             N+DG+KTG+T N+G+++VTS    D  +V VVMG  + + R  ++ +L+    
Sbjct: 235 SLNVDGMKTGHTSNAGYSLVTSATKGDMRLVTVVMGTASERARKVESKKLLNYGF 289


>gi|329851344|ref|ZP_08266101.1| D-alanyl-D-alanine carboxypeptidase family protein [Asticcacaulis
           biprosthecum C19]
 gi|328840190|gb|EGF89762.1| D-alanyl-D-alanine carboxypeptidase family protein [Asticcacaulis
           biprosthecum C19]
          Length = 457

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 95/256 (37%), Positives = 150/256 (58%), Gaps = 2/256 (0%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYL 93
           + L   + + A +L    +YS+IV+D    ++    K D  RYPASLTK+MTLY+ F+ L
Sbjct: 1   MILVSPLKARAQDLSGDARYSAIVVDAVTGEVFYSAKADSARYPASLTKIMTLYMAFDAL 60

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               L  +  I +S+ AA Q+P K+YLK       +  +  +   SAND++ A  E I G
Sbjct: 61  AMGTLKPDDTIVMSRNAAGQSPVKVYLKAGETIDVDSAMRLVALYSANDLAVALAEKIGG 120

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           +E++FA LM+ KA+++GM  T + NASGL D  Q+++ARD AIL   + +++PQYY YFS
Sbjct: 121 TEERFAALMTIKAQELGMGQTRFVNASGLPDPRQLSSARDMAILARAVMRDYPQYYDYFS 180

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           +  + +R R   NHN L   M  +DG+KTG+T  +G+N+V S       ++AV++G    
Sbjct: 181 LPNYTFRGRTYVNHNPL-RNMPGVDGMKTGFTNAAGYNLVASQVKDGHRLIAVMLGGNNK 239

Query: 274 QERDQKALELITSFLE 289
            +R +    L+ +  +
Sbjct: 240 SQRREHVTFLMNTGFD 255


>gi|83941609|ref|ZP_00954071.1| D-alanyl-D-alanine carboxypeptidase family protein [Sulfitobacter
           sp. EE-36]
 gi|83847429|gb|EAP85304.1| D-alanyl-D-alanine carboxypeptidase family protein [Sulfitobacter
           sp. EE-36]
          Length = 502

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 93/262 (35%), Positives = 142/262 (54%), Gaps = 2/262 (0%)

Query: 32  GKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIF 90
           G  +  +I ++ +         Y++ VID    ++   +  D   +PASLTKMMTLYI F
Sbjct: 12  GLFILAAIWILLILPLSAMAAPYAAYVIDARTGEVLHSRNADTRLHPASLTKMMTLYIAF 71

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           E ++  ++ L++++ ++  AA++ PSKL LK          I A   +SAND +TA GE 
Sbjct: 72  EAIKRGEISLDSKVKITSHAASEPPSKLGLKSGQTIALRYLIRAAAVKSANDAATAIGEA 131

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           I GSE KFA  M+  AK +GM NT +KNA GL +   ++TA D  I+G  L  + P+YY 
Sbjct: 132 IEGSEAKFARRMNRTAKALGMTNTTFKNAHGLTESGHMSTAHDMTIMGRHLLYDHPEYYN 191

Query: 211 YFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            FS        R +++ N + L+     DGIKTGYTR +GFN+  S    ++ I+  V G
Sbjct: 192 LFSRITADAGVRKVSHTNRRFLSSYKGADGIKTGYTRAAGFNLTASAERGNERIIVTVFG 251

Query: 270 MPTSQERDQKALELITSFLEKK 291
             ++  R+ K  EL+     + 
Sbjct: 252 GTSTSARNAKVAELMDLGFRRA 273


>gi|153855284|ref|ZP_01996450.1| hypothetical protein DORLON_02464 [Dorea longicatena DSM 13814]
 gi|149752283|gb|EDM62214.1| hypothetical protein DORLON_02464 [Dorea longicatena DSM 13814]
          Length = 393

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 81/291 (27%), Positives = 143/291 (49%), Gaps = 11/291 (3%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I+++ +  Q+   K  DE   PAS+TK+MTL +IF+ L S ++ L  ++  S+ AA
Sbjct: 40  APSAILMEASTGQIIYEKNPDEKLPPASVTKVMTLLLIFDALDSGQIKLGDEVTTSEYAA 99

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S+++L+     T +  I  +   SAND      E+I G+E++F   M+ +AK +GM
Sbjct: 100 SMGGSQVFLEPGETQTVDTLIKCISVASANDACVTMAEYICGNEEEFVTKMNKRAKDLGM 159

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-------- 223
           +NT + N +GL     +TTARD A++   L   +PQ + Y +I      ++         
Sbjct: 160 KNTHFVNCNGLDADGHLTTARDIALMSKELITTYPQIFDYCNIWMENIIHKTQKGESEFG 219

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           +TN NKL+ +     G+KTG T  + F +  + R  D  ++AV+M    S+ R + A+ L
Sbjct: 220 LTNTNKLIRQYEYATGLKTGSTSKAKFCVSATGRKDDIDLIAVIMAADDSKARVRDAITL 279

Query: 284 ITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
           +     K   +     ++  +S   ++     +   R    F  +D     
Sbjct: 280 LNYGFGKC--QKYTEKKQKKISPVEVRGGREKQVKVRQQGAFTYVDTTGAD 328


>gi|329120772|ref|ZP_08249433.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327460142|gb|EGF06480.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 432

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 83/259 (32%), Positives = 142/259 (54%), Gaps = 2/259 (0%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
            +V D+   Q+   +  D+P  PASLTK+MT Y+ F+ L+S KL+    +  S+ A    
Sbjct: 84  YLVQDLQSGQILTGRDLDKPVEPASLTKLMTAYLAFKALESGKLNATDTLTPSEKAWRAE 143

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S+++L           +  LI +S ND +    E + GSE+ FA +M+ +AK++GM  T
Sbjct: 144 GSRMFLNAGKPVAVGDLLKGLIVQSGNDAAITLAEALGGSEEGFAKMMNAEAKRLGMNGT 203

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            + NA+GL      TT RD AIL   + +++P+YY  +S++ F+Y N    N N LL + 
Sbjct: 204 HFTNATGLPGDGHFTTVRDLAILAAAIIRDYPKYYPIYSMQSFKYNNIEQPNRNLLLYRD 263

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE-KKTL 293
            N+DG+KTG+T ++G+N+V S +     +V+VV+G  + + R  ++ +L+   L+   T 
Sbjct: 264 PNVDGLKTGHTNSAGYNLVASSKRNGRRVVSVVVGTESIEARAGESSKLLNWALQAFDTP 323

Query: 294 KHQQTHRKDNLSSTSLKKS 312
           K     +  + +     K+
Sbjct: 324 KAYDAGKAVSAAQVYKGKA 342


>gi|78043555|ref|YP_360781.1| D-alanyl-D-alanine carboxypeptidase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995670|gb|ABB14569.1| D-alanyl-D-alanine carboxypeptidase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 377

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 71/251 (28%), Positives = 132/251 (52%), Gaps = 7/251 (2%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
            ++   E++A+   ++I+++    ++   K+  +    AS+TK+MTL +  E ++  K++
Sbjct: 21  ALAAPLEINAR---AAILMEPYTGKILYEKEIHKKLPIASVTKLMTLLLAIEAVEKGKVN 77

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           L   + VS+ AA+   S+LY+     F+ +  ++A+   SAND   A  E ++G+E+ F 
Sbjct: 78  LEDIVKVSEEAASMGGSQLYMYAGEEFSFKDLLMAVAVASANDACVAVAETVAGNEQAFV 137

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             M+ KA+++GM NT + N+ G  D N  +T  D AIL     K  P + +   I++F  
Sbjct: 138 EEMNKKAEELGMTNTHFVNSYGFDDPNHYSTCYDLAILLREAIK-HPLFLELSQIKEFTL 196

Query: 220 RNRIIT--NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           R       N NKLL     +D  KTG+T  +G+ + ++    D  ++AVV+G P  +   
Sbjct: 197 RGGETRRFNTNKLLWYYRGVDAGKTGWTEEAGYCLASTASRDDLRLIAVVLGCPVKKGHF 256

Query: 278 QKALELITSFL 288
            ++++L     
Sbjct: 257 TESIKLYNYGY 267


>gi|332971215|gb|EGK10178.1| serine-type D-Ala-D-Ala carboxypeptidase [Desmospora sp. 8437]
          Length = 418

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 80/318 (25%), Positives = 151/318 (47%), Gaps = 32/318 (10%)

Query: 35  LFLSIIMISMASELHAKPKY--------SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMT 85
           + LS+  +    E+ A+P+         S +++++   ++   K++  P  PASLTK+MT
Sbjct: 24  VLLSVGSLLSVGEVFAEPQAEPLDIQTRSYVLMEMETGRVLAGKEEKHPYPPASLTKIMT 83

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
            Y++ E ++S ++    ++ +SK AA+   +++ L      T E+   A+   SAND S 
Sbjct: 84  EYLVLEEVKSGRIRWKDEVKISKNAASIGEAQVNLVAGEKRTVEELFHAMAIHSANDASV 143

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK----------NQITTARDQA 195
           A  E ISGSE+ F   M+ +AK++G++ + + N +GL  +              +A D A
Sbjct: 144 ALAEHISGSERAFVGKMNKEAKRLGLKKSHFINCTGLPSRSYPQPPEVKGEHRMSAEDIA 203

Query: 196 ILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLLNK----MHNIDGIKTGYTR 246
            L   L ++ PQ  +  S+ ++ +     R  I+ N N++L         +DG+KTGYTR
Sbjct: 204 RLTRRLLRDHPQVIRTTSLPEYIFRQGEKRELILPNSNRMLPGSPHFYDGVDGVKTGYTR 263

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE----KKTLKHQQTHRKD 302
            +G++   + R     ++ VVMG  +   R  +  +L+    +    K  LK  +   K 
Sbjct: 264 EAGYSFTGTARRDGMRLITVVMGTDSKSRRFAETEKLLDFGFQNYGMKTLLKKGKPVPKH 323

Query: 303 NLSSTSLKKSLMIKKLKR 320
              +    +   +  +  
Sbjct: 324 GKVALRGGEETEVPVVAG 341


>gi|259908963|ref|YP_002649319.1| D-alanyl-D-alanine carboxypeptidase [Erwinia pyrifoliae Ep1/96]
 gi|224964585|emb|CAX56098.1| D-alanyl-D-alanine carboxypeptidase [Erwinia pyrifoliae Ep1/96]
 gi|283478973|emb|CAY74889.1| dacC [Erwinia pyrifoliae DSM 12163]
          Length = 402

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 77/257 (29%), Positives = 135/257 (52%), Gaps = 11/257 (4%)

Query: 45  ASELHAKP---KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHL 100
           A ++ A P     + I++D + +++      + R  PASLTKMM+ Y+I + L++ K+  
Sbjct: 30  AQQMPAAPQIDAKAWILMDYSSSKVLAESNADLRLDPASLTKMMSSYVIGQALKAGKIGK 89

Query: 101 NTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
           +  + V K A        +  S ++LK   +    +    ++ +S ND S A  ++++GS
Sbjct: 90  DDLVTVGKDAWATGNPVLKGSSLMFLKPGDHIAVSELNKGIVIQSGNDASIALADYVAGS 149

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           +  F  LM+N  + +G++NT +K   GL    Q +TARD A++G  L ++ P  Y     
Sbjct: 150 QDAFVGLMNNYVQALGLKNTHFKTVHGLDASGQYSTARDMALIGQALIRDVPDEYALHKE 209

Query: 215 RKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           + F + N    N N+LL      +DGIKTG+T  +G N+V S    D  +++VV+G  T 
Sbjct: 210 KVFTFNNIRQYNRNRLLWSTSLQVDGIKTGHTSGAGNNLVASAVDGDRRMISVVLGAATD 269

Query: 274 QERDQKALELITSFLEK 290
             R +++ +L+T  L  
Sbjct: 270 AIRFRESEKLLTWGLRN 286


>gi|99082376|ref|YP_614530.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruegeria sp. TM1040]
 gi|99038656|gb|ABF65268.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruegeria sp. TM1040]
          Length = 496

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 94/242 (38%), Positives = 137/242 (56%), Gaps = 2/242 (0%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V+D    ++   +  D   +PASLTKMMTLYI FE +++ ++ L+TQI VS+ A  + P
Sbjct: 1   MVMDARTGEVLHSRNADTRLHPASLTKMMTLYIAFEAVRNGEITLDTQITVSRNAEAEPP 60

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S+L L+          I A   +SAND +TA GE ISGSE  FA  M+  AK +GM  T 
Sbjct: 61  SELGLRRGQKIALRYLIRAAAVKSANDAATAIGEAISGSEAAFARRMNRTAKALGMTRTT 120

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN-KLLNKM 234
           +KNA GL     ++TARD  ILG  +  ++P+YY  FS        +++ N N + L   
Sbjct: 121 FKNAHGLTANGHMSTARDMTILGRHMLYDYPEYYNLFSRTSTNAGTKVVYNTNRRFLAAY 180

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
              DGIKTGYTR +GFN+V+S +  D+ I+A V G  ++  R+ K  EL+     +    
Sbjct: 181 RGADGIKTGYTRAAGFNLVSSAKRGDERIIATVFGGKSTAARNAKIAELLDLGFRRAPAY 240

Query: 295 HQ 296
            +
Sbjct: 241 AK 242


>gi|93005488|ref|YP_579925.1| Serine-type D-Ala-D-Ala carboxypeptidase [Psychrobacter
           cryohalolentis K5]
 gi|92393166|gb|ABE74441.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Psychrobacter cryohalolentis K5]
          Length = 388

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 150/309 (48%), Gaps = 16/309 (5%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           ++G  + +  +M S A +       + +++D N  ++   K  ++   PASLTKMMT YI
Sbjct: 14  VVGVSISMGAVMASAAIQPPEMANTAYVLMDYNTGEILAQKNANQALPPASLTKMMTSYI 73

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSK---LYLKEKTYFTTEQGILALITRSANDVST 145
           I + L S  L    Q+ +S +A  +  S    +Y+      +    +  +I +S ND S 
Sbjct: 74  IEQRLASGDLKETDQVLMSPSAWCRGSSSQSCMYVPVNKSASVIDMLRGIIIQSGNDASK 133

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E I+GSE  FAILM+ +A+KIGM+NT + N++G+ D+    +A D A L   + KN 
Sbjct: 134 AMAEHIAGSEASFAILMNEQAQKIGMKNTHFVNSTGMPDEGHQASALDLAKLSRAIIKNS 193

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
             YY  +S ++F Y      N N LL     +DG+KTG+T  +G+ +  S   +   +++
Sbjct: 194 GDYYSIYSEKEFTYNGITQGNRNALLATDPTVDGLKTGHTDAAGYCLAASSNREGMRLIS 253

Query: 266 VVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQF 325
           V+MG  + Q R  ++ EL+       T            + T       + K+   + + 
Sbjct: 254 VIMGTESQQARADQSRELLNWGFGHFT------------TVTQAPAGQFVSKVPVWFGEA 301

Query: 326 KKIDAKAHS 334
           K+I+     
Sbjct: 302 KEIEVATGD 310


>gi|171060904|ref|YP_001793253.1| Serine-type D-Ala-D-Ala carboxypeptidase [Leptothrix cholodnii
           SP-6]
 gi|170778349|gb|ACB36488.1| Serine-type D-Ala-D-Ala carboxypeptidase [Leptothrix cholodnii
           SP-6]
          Length = 389

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 74/255 (29%), Positives = 140/255 (54%), Gaps = 11/255 (4%)

Query: 45  ASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           A    A P+ ++   +++DV+ NQ+   +  D    PASLTK+MT Y++F+ L+ KKL L
Sbjct: 26  ALAQTAPPEVAARAYLLLDVSANQVLAERDADATVEPASLTKLMTAYLVFQALRDKKLAL 85

Query: 101 NTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
             ++ VS+ A        S++Y++  T    E  I  +I +S ND +    E + G+ + 
Sbjct: 86  EQELTVSERAWRTGMTDTSRMYIQVGTKVKVEDLIKGMIVQSGNDATVQLAEAVGGTLEN 145

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F +LM+ +A+  G++ T ++N  GL     ++TAR+ +I+   L  +FP   +Y+++++F
Sbjct: 146 FVVLMNRQAQAFGLKVTQFRNPEGLPAPGHVSTARELSIIASRLLVDFPAEARYYTLKEF 205

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY----KDDPIVAVVMGMPTS 273
            +      N N LL +   +DG+KTGYT N+G+ ++ + +         +V+V++G  + 
Sbjct: 206 TFNKIKQPNRNLLLWRDPTVDGLKTGYTDNAGYCLIATAKRDLPAGQRRLVSVILGASSK 265

Query: 274 QERDQKALELITSFL 288
           + R  +A +L+    
Sbjct: 266 ESRATEAQKLLNWGY 280


>gi|310767134|gb|ADP12084.1| D-alanyl-D-alanine carboxypeptidase [Erwinia sp. Ejp617]
          Length = 402

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 77/257 (29%), Positives = 135/257 (52%), Gaps = 11/257 (4%)

Query: 45  ASELHAKP---KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHL 100
           A ++ A P     + I++D + +++      + R  PASLTKMM+ Y+I + L++ K+  
Sbjct: 30  AQQMPAAPQIDAKAWILMDYSSSKVLAESNADLRLDPASLTKMMSSYVIGQALKAGKIGK 89

Query: 101 NTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
           +  + V K A        +  S ++LK   +    +    ++ +S ND S A  ++++GS
Sbjct: 90  DDLVTVGKDAWATGNPVLKGSSLMFLKPGDHIAVSELNKGIVIQSGNDASIALADYVAGS 149

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           +  F  LM+N  + +G++NT +K   GL    Q +TARD A++G  L ++ P  Y     
Sbjct: 150 QDAFVGLMNNYVQALGLKNTHFKTVHGLDASGQYSTARDMALIGQALIRDVPDEYALHKE 209

Query: 215 RKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           + F + N    N N+LL      +DGIKTG+T  +G N+V S    D  +++VV+G  T 
Sbjct: 210 KVFTFNNIRQYNRNRLLWSTSLQVDGIKTGHTSGAGNNLVASAVDGDRRMISVVLGAATD 269

Query: 274 QERDQKALELITSFLEK 290
             R +++ +L+T  L  
Sbjct: 270 AIRFRESEKLLTWGLRN 286


>gi|239831909|ref|ZP_04680238.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium
           LMG 3301]
 gi|239824176|gb|EEQ95744.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium
           LMG 3301]
          Length = 426

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 108/296 (36%), Positives = 167/296 (56%), Gaps = 6/296 (2%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMM 84
           R  +L+      + ++ + AS        S +V D +  ++ G         PASL KMM
Sbjct: 29  RLSRLIASFALGAGVLCTSASMAS----TSWVVFDADSGRILGQDDANIQHAPASLAKMM 84

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TLY+ FE L++ +LH +  +P+SK AA++   KL+LK     T    I  +I  SAND +
Sbjct: 85  TLYLAFEALKTGRLHWDDAMPISKNAASKVRMKLWLKPGETITVHDAIYGMIVISANDAA 144

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-NQITTARDQAILGILLRK 203
           T  GE+++GSE  F  LM+ +A++IGM++T + N SGL  K  Q+TTARD AILG+ LR+
Sbjct: 145 TVMGEYMAGSEAAFGRLMTQRARQIGMKSTFFVNPSGLTAKATQLTTARDMAILGMSLRR 204

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           +FP+ Y  FS R F +RNR++  HN L+ +   +DGIKTGYT  SG+N+V+S    D  +
Sbjct: 205 DFPEQYALFSTRSFTFRNRVLNGHNTLMYRYQGVDGIKTGYTDVSGYNLVSSAIINDKHL 264

Query: 264 VAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
           V VV+G  ++++RD +  +L+T F  +      Q          + + +    K  
Sbjct: 265 VGVVLGAGSARQRDDQMAKLLTRFSTEGAETKGQLVAMAKPQPVAKQTAAAQPKAD 320


>gi|291550443|emb|CBL26705.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus torques L2-14]
          Length = 390

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 79/330 (23%), Positives = 155/330 (46%), Gaps = 18/330 (5%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQ-DE 73
            G + +++   ++   +FL   +    + +HA+       S I+++++   +   K  D 
Sbjct: 1   MGELQMKKGFTVILLGVFLLYRIAFPTTVVHAEEVEISAPSGILMEMSTGTVLFEKDADT 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
            R PAS+TK+MT+ +IF+ L++  + L+ ++  S+ AA+   S+++L+     T    + 
Sbjct: 61  ARPPASVTKIMTMLLIFDALENGTISLDDEVSTSEYAASMGGSQVFLEPGEMQTVGTLLK 120

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +   SAND      E I G+E++F   M+ +AK +GM++T + N +GL       +ARD
Sbjct: 121 CISVASANDACVTMSECICGNEQEFVKQMNERAKGLGMKHTNFVNCNGLDADGHEMSARD 180

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRI--------ITNHNKLLNKMHNIDGIKTGYT 245
            A++   L   +PQ   Y ++      +          +TN NKL+ +     G+KTG T
Sbjct: 181 IALMSRELMTRYPQIKDYCTVWMENITHTTARGSSEFGLTNTNKLIRQYEYATGLKTGST 240

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLS 305
             + F +  +       ++AV+MG   S+ R + A+ L+     K  + + +  +   + 
Sbjct: 241 GKAKFCVSATASKNGVDLIAVIMGAEDSKSRFKDAVTLLNYGFGKCQIYNAKEQKLPEVL 300

Query: 306 STSLKKSLMIKKLKRTYSQ-FKKIDAKAHS 334
               K+      LK  Y + F  +D +   
Sbjct: 301 VKGGKED----HLKIQYEEGFTYVDTEGSD 326


>gi|182678513|ref|YP_001832659.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182634396|gb|ACB95170.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 394

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 84/281 (29%), Positives = 140/281 (49%), Gaps = 9/281 (3%)

Query: 22  IYIQRNIQLMGKIL--FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPA 78
           + + R I L+  +L  FL+  + + A  +      + I+I+     +   K  D P  PA
Sbjct: 2   VPVSRRILLIPFLLSGFLAGPIAARAQGID-TSAPNVILIEAETGGVLFEKNPDAPVIPA 60

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGIL 133
           S  K+MT  ++F+ L+  ++HL+    +S+TA  Q       S +Y    ++   E  I 
Sbjct: 61  STAKIMTAELVFQNLREGRIHLDDTFLISETAWRQGGAPSRGSSMYAALNSHVRVEDLIR 120

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  S ND + A  E ++GSE  FA LM+ +A+++G+ ++++ NA G  D +Q+ TARD
Sbjct: 121 GLVIDSGNDAAIALAEGLAGSEGAFATLMTKRARELGLDHSVFTNAWGRGDPDQLVTARD 180

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            A L   +   +P YYKYF  ++F +     TN N LL      DG+KTG    SG+ +V
Sbjct: 181 MARLAAHVITTYPDYYKYFGEKEFTWNKIRQTNRNPLLTMDFGADGLKTGNIDASGYGLV 240

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
            S     + ++  + G   ++ER  +A  L        T K
Sbjct: 241 GSAVQNGERLILALYGAKNAKERADEARRLFLWGFRSFTTK 281


>gi|163868095|ref|YP_001609299.1| penicillin-binding protein [Bartonella tribocorum CIP 105476]
 gi|161017746|emb|CAK01304.1| penicillin-binding protein [Bartonella tribocorum CIP 105476]
          Length = 449

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 116/271 (42%), Positives = 163/271 (60%), Gaps = 1/271 (0%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASL 80
           +   + I +   +L  S        +     KY++IVID    +          RYPASL
Sbjct: 9   MRCYKKIAISFIMLVSSYCWAFATPQGAYPDKYAAIVIDATTGKTLFQANATLKRYPASL 68

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           TKMMTLY++FE +Q +++  NT IPVS  AA + P+K+  K     + E    ALITRSA
Sbjct: 69  TKMMTLYLLFEAMQMRRVTPNTPIPVSHYAAMRPPTKIGFKAGQTISAEAAAKALITRSA 128

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           NDV+TA  E++ GSEK FA +M+ KA+K+GM++T + NASGL D    +TARD A L + 
Sbjct: 129 NDVATAIAEYLGGSEKNFARMMTAKARKLGMKHTHFANASGLPDVQNYSTARDIATLSLA 188

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           LR++FP+ YK F  + F +R   I +HNKL+  M  +DGIKTGYT+ SG N+ TS+R + 
Sbjct: 189 LRQHFPKQYKLFKTKSFNFRGHTINSHNKLVKVMKGVDGIKTGYTQMSGSNLATSMRLEG 248

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEKK 291
             +VAVVMG  +S  RD+    L+  +L K 
Sbjct: 249 RSVVAVVMGGKSSTARDEHMASLLNQYLPKA 279


>gi|15838821|ref|NP_299509.1| penicillin binding protein 6 precursor [Xylella fastidiosa 9a5c]
 gi|9107379|gb|AAF85029.1|AE004035_8 penicillin binding protein 6 precursor [Xylella fastidiosa 9a5c]
          Length = 396

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 76/249 (30%), Positives = 133/249 (53%), Gaps = 9/249 (3%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
            +V+D    Q+   +       PASLTK+MT Y+I   +++ K+H + Q+ +++ A  + 
Sbjct: 47  WVVMDFASGQVLAGENIHTHLAPASLTKVMTSYVIAAEIKNGKVHRDDQVMMTENAWRKG 106

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S            E     +I +S ND + A  E ++GSE+ FA LM++ A++I
Sbjct: 107 GAGTDGSYSGFPVNKTARLEDMEQGMIVQSGNDAAIALAEHVAGSEEAFASLMNSYAQRI 166

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM+N+ + +A+GL  +   ++A D A+LG  L ++ P+ Y Y  +++        +N N 
Sbjct: 167 GMKNSHFVDATGLSAEGHYSSAYDMALLGRALIRDSPETYAYNKVKELVVNGIKQSNRNL 226

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS--- 286
           LL +  ++DGIKTG+T  +G+ I+ S +  D  I+ VVMG  + ++R + +L L+     
Sbjct: 227 LLWRDPSVDGIKTGHTSEAGYCIINSAKRGDQRILTVVMGDVSEKKRAEDSLALLNWGFR 286

Query: 287 FLEKKTLKH 295
           F E  TL  
Sbjct: 287 FFETHTLYE 295


>gi|150395730|ref|YP_001326197.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae
           WSM419]
 gi|150027245|gb|ABR59362.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae
           WSM419]
          Length = 405

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 96/257 (37%), Positives = 157/257 (61%), Gaps = 1/257 (0%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYL 93
           L L+ I +       A    +S+V+D    ++   +  +   +PASLTKMMTLY+ FE L
Sbjct: 6   LALATIAVLFFGTAQAVAGSASLVVDARTGRVLSAENPDTLNHPASLTKMMTLYMTFEAL 65

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
              +L   T +P+S TAA + P+KL ++     T ++ +  +I RSAND + A  E + G
Sbjct: 66  HRGQLAWKTPVPMSATAARKPPTKLGVRPGETITVQEAVYGMIVRSANDAAAAMAERLGG 125

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           +E+ FA +M+ KA+++GM  T + NASGL    Q+TTARD A L + L +++P+ Y+ FS
Sbjct: 126 TEEGFARMMNAKARQLGMNRTFFVNASGLPASEQVTTARDMARLAVALMRHYPREYRLFS 185

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           ++ F +R R+I  HN L+ +   +DGIKTGYTR SG+N+V+++   +  ++ VV+G  ++
Sbjct: 186 VQSFAFRGRVIRGHNNLMYRYQGMDGIKTGYTRASGYNLVSAVAEGNRRLIGVVLGGRSA 245

Query: 274 QERDQKALELITSFLEK 290
           + RD+K   L+   L +
Sbjct: 246 RSRDEKMAALLDQHLGR 262


>gi|300313593|ref|YP_003777685.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding)
           transmembrane protein [Herbaspirillum seropedicae SmR1]
 gi|300076378|gb|ADJ65777.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding)
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 384

 Score =  275 bits (703), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 88/265 (33%), Positives = 151/265 (56%), Gaps = 11/265 (4%)

Query: 37  LSIIMISMASELHAKP---KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEY 92
           LSI  ++ +++    P     S +++D + NQ+      + R  PASLTK+MT Y+ F  
Sbjct: 13  LSISTLTASAQSLPPPTVAAKSWLLLDASANQVIASSDPDTRVEPASLTKLMTAYLAFAA 72

Query: 93  LQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           L+ K+L L  ++ VS  A   +PS  K++++     + +  +  LI+ S ND + A  E 
Sbjct: 73  LRDKRLSLEQEVSVSVNAWKVDPSSSKMFIEPNKPVSIDNLLYGLISVSGNDAAVAVAEA 132

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           +SG+E  F  LM+ +A++ G+ NT + N  GL   +  TTARD +IL   L  +FP+YYK
Sbjct: 133 VSGTEDAFVQLMNREAQRQGLTNTHFSNPHGLPSPDTYTTARDLSILCRNLINDFPEYYK 192

Query: 211 -YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY----KDDPIVA 265
            Y+S++KF Y N    N N+LL     +DG+KTG+T ++G++++TS        +  +++
Sbjct: 193 RYYSVKKFTYNNITQPNRNRLLWLDPTVDGMKTGHTSSAGYSLITSAHRPVPNGERRLIS 252

Query: 266 VVMGMPTSQERDQKALELITSFLEK 290
           VV+G  + Q R Q++ +L+    + 
Sbjct: 253 VVIGTVSDQVRTQESQKLLNWGFQN 277


>gi|91977185|ref|YP_569844.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisB5]
 gi|91683641|gb|ABE39943.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisB5]
          Length = 432

 Score =  275 bits (703), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 76/315 (24%), Positives = 145/315 (46%), Gaps = 25/315 (7%)

Query: 1   MLQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYS----- 55
           M++  ++S +   F+      + ++       ++L   ++ +++ S        S     
Sbjct: 1   MVRAPVESRSGTHFMALFAPLLPVRSRRLRGWRVLLAGVLAMAIGSGAVYAANQSVQGAK 60

Query: 56  --------------SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
                         +I+ID     +   K  DE R P+S+ K+MT+ ++F  L   ++ L
Sbjct: 61  KEEVAGGYETEAPTAILIDAESGSVLFEKNADELRPPSSMLKLMTVELVFHLLTKGEIKL 120

Query: 101 NTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                +S+ A  +       S ++ +  +  + +  +   I +S ND   A  E I+GSE
Sbjct: 121 TDDYRISENAWRRGGAPAGSSTMFAEIHSRVSIDDLLRGAIIQSGNDSCIALAEGIAGSE 180

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           + FA  M+ +A++IG+  + + N++GL D     + R+   L   L + +P YYK F  +
Sbjct: 181 QAFAERMTKRAREIGLAQSTFANSNGLPDPGNKMSVRELGRLARHLIQTYPDYYKLFGEK 240

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           +F +     TN N LLN M   DG+KTGYT++ G+ +V S       ++ VV G+  + +
Sbjct: 241 EFTWNKIRQTNRNPLLNTMPGADGLKTGYTKDGGYGMVGSAVQNGTRLIVVVNGVEDADD 300

Query: 276 RDQKALELITSFLEK 290
           R  +A +L+      
Sbjct: 301 RASEAKKLLEWGFRN 315


>gi|317132116|ref|YP_004091430.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ethanoligenens harbinense
           YUAN-3]
 gi|315470095|gb|ADU26699.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ethanoligenens harbinense
           YUAN-3]
          Length = 419

 Score =  275 bits (703), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 134/293 (45%), Gaps = 14/293 (4%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
                    S+++ + +  ++       E  YPAS++K+MT  ++ E +++ KLH   ++
Sbjct: 67  PPAVTTTAKSAVLAEQSTGRILYENNPHEKMYPASISKIMTELLVLEAIENGKLHFTDKV 126

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
            VS  A++   S ++L+     T      A++  SAND + A  E ++GSE  F  LM+ 
Sbjct: 127 SVSAHASSMGGSDIWLEPGEVMTVLDLFKAMVVNSANDAAVALAEKVAGSEPAFVNLMNR 186

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNR 222
           KAK++GM +T + NA+GL     +T+A D  ++   L +   + + Y +I     R    
Sbjct: 187 KAKELGMNDTNFTNATGLDADGNLTSAYDVMLMSRELLR-HKEIFNYTTIWMDSLRGGKT 245

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N N+L+      +G+KTG T  +G+ +  +       ++AVVM  PT QER   A  
Sbjct: 246 ALFNTNRLIRFYQGANGLKTGSTGKAGYCLSGTALRDGMQLIAVVMNCPTLQERFTAAGT 305

Query: 283 LITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           L+       +           ++   L K L +  L     + + +     S 
Sbjct: 306 LLDYGFANWS----------CVTPKKLSKPLYVDVLHGAQDKVEAVADGNPSV 348


>gi|333006637|gb|EGK26136.1| D-alanyl-D-alanine carboxypeptidase dacC domain protein [Shigella
           flexneri VA-6]
          Length = 269

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/261 (29%), Positives = 129/261 (49%), Gaps = 11/261 (4%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPAS 79
           + R +      LFL       A +    P     + I++D    ++      DE   PAS
Sbjct: 7   LLRALAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPAS 66

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +      
Sbjct: 67  LTKIMTSYVVGQVLKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNK 126

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +I +S ND   A  ++++GS++ F  LM+  AKK+G+ NT ++   GL    Q +TARD
Sbjct: 127 GVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARD 186

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNI 252
            A+LG  L  + P+ Y     ++F +      N N+LL   + N+DG+KTG T  +G+N+
Sbjct: 187 MALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNL 246

Query: 253 VTSLRYKDDPIVAVVMGMPTS 273
           V S    D  +++VV+G  T 
Sbjct: 247 VASATQGDMRLISVVLGAKTE 267


>gi|71065253|ref|YP_263980.1| penicillin-binding protein 6 [Psychrobacter arcticus 273-4]
 gi|71038238|gb|AAZ18546.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Psychrobacter arcticus 273-4]
          Length = 388

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 84/267 (31%), Positives = 140/267 (52%), Gaps = 4/267 (1%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           ++G  + +S +M S A +       + +++D N  ++   K  ++   PASLTKMMT YI
Sbjct: 14  VVGVSISMSAVMASAAIQQPEMANTAYVLMDYNTGEILAQKNANQALPPASLTKMMTSYI 73

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNP---SKLYLKEKTYFTTEQGILALITRSANDVST 145
           I + L S  L    Q+ +S  A  +     S +Y+      +    +  +I +S ND S 
Sbjct: 74  IEQRLASGDLKETDQVLMSPNAWCRGSNSQSCMYVPVNKSASVIDMLRGIIIQSGNDASK 133

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E I+GSE  FAILM+ +A+KIGM+NT + N++G+ ++    +A D A L   + KN 
Sbjct: 134 AMAEHIAGSEASFAILMNEQAQKIGMKNTHFVNSTGMPEEGHQASALDLAKLSRAIIKNS 193

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
             YY+ +S ++F Y      N N LL     +DG+KTG+T  +G+ +  S   +   +++
Sbjct: 194 GDYYRIYSEKEFTYNGITQGNRNALLATDPTVDGLKTGHTDAAGYCLAASSNREGMRLIS 253

Query: 266 VVMGMPTSQERDQKALELITSFLEKKT 292
           V+MG  + Q R  ++ EL+       T
Sbjct: 254 VIMGTESQQARADQSRELLNWGFGHFT 280


>gi|323705320|ref|ZP_08116895.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535222|gb|EGB24998.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 384

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 84/283 (29%), Positives = 143/283 (50%), Gaps = 10/283 (3%)

Query: 29  QLMGKILFLSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
            L+  ++F+ I  + + +  +A        S+I++D N  ++   K   E   PAS+TK+
Sbjct: 5   TLLFTLIFVLICSVLLENFAYADNFNLKSKSAILMDANTGKVLYEKNSHEELPPASVTKV 64

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT+ ++ E L S K+    ++  S+ A     +++YL+     T +  + ++   SAND 
Sbjct: 65  MTMLLVIEALDSGKIKTTDKVVTSEHAYDMGGTQIYLEVGEEMTVDDLLKSVAMNSANDA 124

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           S A  E+ISGSE+KF   M+ +AK++G +NT +KNASGL +    T+  D A++   L K
Sbjct: 125 SVALAEYISGSEEKFVEEMNKRAKELGAKNTNFKNASGLPEDGHYTSVYDMALISRELVK 184

Query: 204 NFPQY-YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           +   + Y    I   R     + N NKLL      DGIKTG T  + + +  + +  D  
Sbjct: 185 HKNVFKYLTDKIDSVRNGKFSLANTNKLLWNYQGADGIKTGSTSEALYCLSATAKRGDTR 244

Query: 263 IVAVVMGMPTSQERDQKALELITSFL----EKKTLKHQQTHRK 301
            +AVV G P S  R ++A +L+         KK ++  + +  
Sbjct: 245 FIAVVFGAPDSATRFKEASKLLDYGFANFETKKVVEAGKVYGN 287


>gi|163852334|ref|YP_001640377.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           extorquens PA1]
 gi|163663939|gb|ABY31306.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           extorquens PA1]
          Length = 418

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 71/265 (26%), Positives = 133/265 (50%), Gaps = 6/265 (2%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           ++  I+   +      ++        +I+ID +   +   K  DEP  PAS+ K+MT  I
Sbjct: 16  MLAAIVSAFLHPAPARAQTFQTAAAHAILIDADSGSVLFEKAADEPFSPASMAKLMTAEI 75

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRSANDV 143
           +F  ++  +L ++T+  V++ A  +       S ++ +  +       +  LI +S ND 
Sbjct: 76  VFRAIKEGRLSMDTEFTVTEDAWRRGGAGGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDA 135

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           +    E ++G+E  FA +M+ +AK+IG+  + ++NA+G    +Q  TARD A +   L  
Sbjct: 136 AITIAENMAGTEDAFAGMMNQRAKEIGLTRSTFRNATGYSAPDQKVTARDMARIAQHLID 195

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
            +P++YK +S R+F +      N N LL      DG+KTGY   SG+ +  S       +
Sbjct: 196 TYPEFYKIYSEREFTWNKIKQQNRNPLLTLDIGADGLKTGYLEESGYALTGSAVQNGQRL 255

Query: 264 VAVVMGMPTSQERDQKALELITSFL 288
           + VV G+ T+++R  +A +++    
Sbjct: 256 IMVVSGLKTARDRAAEARKMMEWGF 280


>gi|45644640|gb|AAS73028.1| D-alanyl-D-alanine carboxypeptidase [uncultured marine gamma
           proteobacterium EBAC20E09]
          Length = 382

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/313 (25%), Positives = 144/313 (46%), Gaps = 17/313 (5%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTL 86
             L+   + L    +  A EL+ K     I+ID   N +      +    PAS+TK+MT 
Sbjct: 7   FTLLVSNIILGQSFVPNAPELNLK---GYILIDPTTNTVIAQSNSDGLIEPASMTKVMTA 63

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y++ + +Q+  + ++ ++ +S+ A     SK++++     +    +  +I +S ND + A
Sbjct: 64  YVVADQIQNDLISIDDEVLISEKAWKMGGSKMFIEVGKRVSILDLLKGIIIQSGNDAAVA 123

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E++ G+E  F  LM+  A  +GM NT + N++GL D N +TTA D AIL       FP
Sbjct: 124 IAEYVGGTEDGFVDLMNAYAASLGMNNTSFINSTGLPDVNHLTTAEDLAILTSNFITKFP 183

Query: 207 QYYKYFSIRKFRYRNRI--ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           + Y  F  ++F Y        N NKLL +    DG+KTG+T ++G+ ++ S +  +  ++
Sbjct: 184 EIYALFKEKEFEYGGISGNKYNRNKLLWRDETSDGVKTGHTSSAGYCLIGSAKRGNMRLI 243

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKTLKH-----------QQTHRKDNLSSTSLKKSL 313
            VV G  ++         L+         +            +    K++  S  +K  +
Sbjct: 244 TVVAGSDSANNSFSDTQRLLEYGFRFYATEKYFDVGTEYASAKVWGGKNDTISLGVKNDI 303

Query: 314 MIKKLKRTYSQFK 326
            I   +  +   K
Sbjct: 304 SITLPRTKFKDVK 316


>gi|86144247|ref|ZP_01062579.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio sp. MED222]
 gi|85837146|gb|EAQ55258.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio sp. MED222]
          Length = 381

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/272 (27%), Positives = 136/272 (50%), Gaps = 8/272 (2%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASL 80
           ++I  N  ++      +  ++     L AK     ++ID N   +   K       PASL
Sbjct: 1   MFIVSNAAIVANTAVAAPSIVPSPPSLGAK---GYVLIDFNSGDVLVEKNAHTKLNPASL 57

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALIT 137
           TK+MT Y+  + ++   +  + Q+ +S+ A  +N    SK++++  T          LI 
Sbjct: 58  TKLMTSYVAGQEMKRGNISADDQVRISENAWAKNFPDSSKMFIEVNTDVAMMDLYRGLII 117

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E ++GS+  F  LM++ A  + ++NT + NA GL   +  +T  D A+L
Sbjct: 118 QSGNDASVAIAEHVAGSQDAFVDLMNSWAASLKLENTHFANAHGLDADDLYSTPYDIALL 177

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
           G  + ++ P  Y  +S R F Y      N N LL  +   +DG+KTGYT  +G+++ +S 
Sbjct: 178 GRAIIRDLPDVYGLYSERSFSYNKITQHNRNGLLRDRSLTVDGMKTGYTSGAGYSLASSA 237

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
              +  ++AVVMG  + + R+  + +L++   
Sbjct: 238 TQGEMRLIAVVMGASSVKSRESDSKQLLSYGF 269


>gi|260461046|ref|ZP_05809295.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium
           opportunistum WSM2075]
 gi|259033080|gb|EEW34342.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium
           opportunistum WSM2075]
          Length = 297

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 107/244 (43%), Positives = 158/244 (64%), Gaps = 2/244 (0%)

Query: 47  ELHAKP-KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            + A P KY++IV+D    +          RYPASLTKMMTLY++FE + S ++   TQI
Sbjct: 37  AVPAPPQKYAAIVVDAQTGKQLFEVNSTAQRYPASLTKMMTLYLLFEAMDSGRVTKETQI 96

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
           PVS  AA+Q P+K+  +       +  I A++ +SANDV+ A GE++ GSE +FA +M++
Sbjct: 97  PVSDHAASQPPTKMRFRRGETIDVDSAIRAIVVKSANDVAVAVGEYLGGSEDQFAAMMTS 156

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII 224
           KA+++GM +T ++NASGL D +Q+TTARD A+LG+ L   FPQ++ YFS   F +R R++
Sbjct: 157 KARQLGMTSTTFRNASGLPDDSQMTTARDMALLGMALHSRFPQHFHYFSESDFMFRGRLV 216

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
             HN +L ++  +DGIKTGY R SGFNIVTS       ++ VVMG  ++++R+     LI
Sbjct: 217 RGHNDMLGRVRGVDGIKTGYIRASGFNIVTSYNADGRRLIVVVMGADSARQRNDHVEALI 276

Query: 285 TSFL 288
              L
Sbjct: 277 QRSL 280


>gi|304321612|ref|YP_003855255.1| D-alanyl-D-alanine carboxypeptidase [Parvularcula bermudensis
           HTCC2503]
 gi|303300514|gb|ADM10113.1| D-alanyl-D-alanine carboxypeptidase [Parvularcula bermudensis
           HTCC2503]
          Length = 423

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 104/266 (39%), Positives = 164/266 (61%), Gaps = 4/266 (1%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTK 82
           ++    L+  I+F +++    A   HA PKY++ +I  +   +   +   EPRYPASLTK
Sbjct: 5   VKSVKSLLITIIFATVLSPLAA---HANPKYAAYIIHADTGDVLFDRYSTEPRYPASLTK 61

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           MMTLY++FE ++  ++   T + VSK A+ Q  SKL +K  T    +  I AL+ +SAND
Sbjct: 62  MMTLYLLFEAIEEGRVSRTTDMKVSKRASLQPASKLGVKSGTTIDVDTAIRALVIKSAND 121

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
           V+T   E ++GSE KFA LM+ KA+ +GM+ T+++NASGL D  Q+TTARD AIL   L 
Sbjct: 122 VATVTAEHLAGSEAKFARLMTQKARDLGMRQTVFRNASGLPDDRQVTTARDMAILSQRLV 181

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           ++FP ++ YF    F++  R   +HNK+   +   DG+KTGYTR SG+N+ T++R  D  
Sbjct: 182 QDFPDFFHYFDDDSFQWGGRTYKSHNKVTQDLKGADGLKTGYTRASGYNLATTVRRGDHR 241

Query: 263 IVAVVMGMPTSQERDQKALELITSFL 288
           ++ +V+G  + + R+   +E++    
Sbjct: 242 LIGIVLGGRSGRTRNAHMIEIMNKAY 267


>gi|238021408|ref|ZP_04601834.1| hypothetical protein GCWU000324_01308 [Kingella oralis ATCC 51147]
 gi|237868388|gb|EEP69394.1| hypothetical protein GCWU000324_01308 [Kingella oralis ATCC 51147]
          Length = 418

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/262 (30%), Positives = 150/262 (57%), Gaps = 6/262 (2%)

Query: 45  ASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           A+E   +P+ ++   +V D+  NQ    K  D+   PASLTK+MT Y+ F+ L+  KL  
Sbjct: 56  AAEALKQPEIAATAYLVRDLQSNQTLVAKNTDQQIEPASLTKLMTAYLAFKALEEGKLQP 115

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
             ++ VS+ A     S+++LK  +       +  LI  S ND +    E I+GSE+ FA 
Sbjct: 116 EQKLTVSEKAWKVEGSRMFLKAHSEVPVWDLMRGLIVVSGNDAAITLAEGIAGSEEAFAK 175

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP-QYYKYFSIRKFRY 219
           +M+++AK++GM  T ++NA+GL     +T+  D AIL   + ++ P +YY+ +S + + Y
Sbjct: 176 MMNDEAKRLGMTQTYFENATGLPAPKHLTSVNDLAILSNAIIRDLPAKYYEVYSYKSYTY 235

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            N    N N LL +  ++DG+KTG+T ++G+N++ + +  +  ++++V+G  +++ R  +
Sbjct: 236 NNITQENRNLLLFRDDSVDGLKTGHTSSAGYNLIATSKRNNRRVLSIVIGAASAEARATE 295

Query: 280 ALELITSFLE-KKTLKHQQTHR 300
           + +L+   L+   T K  Q  +
Sbjct: 296 SSKLLNYALQGFDTPKMYQAGQ 317


>gi|254294362|ref|YP_003060385.1| serine-type D-Ala-D-Ala carboxypeptidase [Hirschia baltica ATCC
           49814]
 gi|254042893|gb|ACT59688.1| Serine-type D-Ala-D-Ala carboxypeptidase [Hirschia baltica ATCC
           49814]
          Length = 322

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 110/263 (41%), Positives = 171/263 (65%), Gaps = 5/263 (1%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           I+ +   L LS+ +I+ AS      KY+S VID++  ++   +  D+PR+PAS+TK+MTL
Sbjct: 11  IKKLITALALSLCVIAPAS----AEKYASYVIDIDTAKVLHSRNADDPRFPASITKVMTL 66

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y++F+ L++ +L L  ++ +S+ A+ Q PSKLYLK     + E  I AL+T+SANDV+  
Sbjct: 67  YMVFDALKAGELMLTDELKISREASKQPPSKLYLKPGETISVETAINALVTKSANDVAVV 126

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E + GSE +FA LM+ KA+++G++NT +KNASGL +  Q++TA D AILG  + ++  
Sbjct: 127 IAERLGGSETRFAALMTAKARQLGLKNTRFKNASGLPNAAQLSTAHDLAILGEAMLRDHA 186

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
            YY YFS  +F+Y      NHNKLL  +  +DGIKTGYTR SGFN++ S       ++AV
Sbjct: 187 DYYDYFSTTEFKYGRANYKNHNKLLESVRGVDGIKTGYTRASGFNLLASAERDGHRVIAV 246

Query: 267 VMGMPTSQERDQKALELITSFLE 289
           ++G  TS+ R+    +L+ +  +
Sbjct: 247 MLGGATSKSRNAHVTDLLEAAFD 269


>gi|317121887|ref|YP_004101890.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591867|gb|ADU51163.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           marianensis DSM 12885]
          Length = 438

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/290 (27%), Positives = 145/290 (50%), Gaps = 12/290 (4%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++++D    Q    +  DE   PASL K+MTL ++F  L+  +L L+ Q+PVS+ A 
Sbjct: 80  ARSAVLVDATTGQELYAQNADELIPPASLAKIMTLDLVFHALEEGRLALDQQVPVSEAAW 139

Query: 112 T-------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
                     PS ++L+       E  I  +   S ND ST   E ++GSE+ F  LM+ 
Sbjct: 140 RLSVQAGLGGPSAMFLEVGERVRIEDLIRGVAVASGNDASTVLAEAVAGSEEAFVRLMNQ 199

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-I 223
            A +IGM+N+++ N+ GL    Q  TARD A L + + +  P   +Y S++ F +++   
Sbjct: 200 HAAEIGMKNSVFSNSHGLPGGQQHVTARDMARLALHVLEAHPDILRYTSLKYFEWKDFAP 259

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
             N+N+L+ +   +DG+KTG+   +G+++V + R  D  +V+VV+G  +   R  ++  L
Sbjct: 260 QPNYNRLIFRDPRVDGLKTGHLSEAGYHLVATARDGDRRLVSVVLGAASDALRVGESQRL 319

Query: 284 ITSFLEKKT---LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
           +    ++ T   +   +  R+        +  + ++          K DA
Sbjct: 320 LDYGFQQFTNTRVAFGENGRQGVSVYKGARSQVTVEPATAPVVTVPKTDA 369


>gi|322383131|ref|ZP_08056958.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321152793|gb|EFX45419.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 414

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 90/346 (26%), Positives = 160/346 (46%), Gaps = 44/346 (12%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           +QL G  LF+S    + A+E+      S+I+++ N  Q+      D    PAS++KMMT 
Sbjct: 2   LQLFGMHLFVSSAAAADANEIPDLQAKSAILMEANTGQVLYENNADTLLPPASMSKMMTE 61

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y+I E ++  K+    ++PVSK AA+   S   L E    + +    A+   S+ND S A
Sbjct: 62  YLIMEAIKDGKIKWEDKVPVSKQAASAIGSGQLLAEGEQLSVKDMFYAISIYSSNDASVA 121

Query: 147 FGEFISGSEKKFAILMSNKAKKIGM-QNTIYKNASGLH------------DKNQITTARD 193
             E++ G+E++FA +M+ KAK++G+ +   + NA+GL             +   + TARD
Sbjct: 122 MAEYLGGTEEEFANMMNKKAKELGLSEGAHFINATGLTRADLGQYAPKNIEGETMMTARD 181

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYR---NRIITNHNKLLNK-----------MHNIDG 239
            AIL   +  + PQ  ++      + R      + N N +L                +DG
Sbjct: 182 AAILARHIVLDHPQVLEFTKTTSKKLRETDKTPMINFNWMLEGNKGNINFKPYAYDGLDG 241

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL----------- 288
           +KTG+T  +G+    + +  D  +++VVMG  +  +R Q+  +++               
Sbjct: 242 LKTGHTNEAGYCFTGTAQRGDMRLISVVMGTNSEPKRFQETRKVLDYGFNNFEMRKVLDA 301

Query: 289 -----EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKID 329
                E+KT+K  +  +K+  +      S ++KK         K+D
Sbjct: 302 NAPVEEQKTVKISKGVKKEIEAGVKEPVSFVVKKGSGDVKVTGKVD 347


>gi|89069769|ref|ZP_01157105.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanicola
           granulosus HTCC2516]
 gi|89044715|gb|EAR50826.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanicola
           granulosus HTCC2516]
          Length = 448

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 89/255 (34%), Positives = 140/255 (54%), Gaps = 2/255 (0%)

Query: 39  IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKK 97
           +++ ++A        Y+++V+D    Q+   +    R +PASLTKMMTLYI FE ++  +
Sbjct: 1   MMLAALAPLASRAAPYAAMVMDARTGQVFHAENATTRLHPASLTKMMTLYIAFEAVERGE 60

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           + L+T + + + AA + PS+L L           I A   +SAND +TA    ISGS++ 
Sbjct: 61  ISLDTVVTIPRQAAAEPPSELGLVTGQQIRFRYLIRAAAVKSANDAATAIAFAISGSQEA 120

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           FA  M+  A+ +GM +T + NA GL     ++TA D  ILG  +  ++PQYY  FS R  
Sbjct: 121 FAARMNRTARAMGMNSTNFINAHGLTANGHMSTAADMTILGRHMIYDWPQYYNLFSRRTT 180

Query: 218 RYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
               R ++N N + L+     DGIKTGYT  +G N+V S +   + I+  V G P+S  R
Sbjct: 181 DAGLREVSNTNRRFLDAYAGADGIKTGYTNAAGSNLVASAQRGSERIIVTVFGAPSSAVR 240

Query: 277 DQKALELITSFLEKK 291
           +Q+ +EL+     + 
Sbjct: 241 NQRVMELMDLGFSRA 255


>gi|257453878|ref|ZP_05619156.1| D-alanyl-D-alanine carboxypeptidase DacC [Enhydrobacter aerosaccus
           SK60]
 gi|257448805|gb|EEV23770.1| D-alanyl-D-alanine carboxypeptidase DacC [Enhydrobacter aerosaccus
           SK60]
          Length = 395

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/277 (31%), Positives = 136/277 (49%), Gaps = 4/277 (1%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLY 87
             +    F + +  + A +       + I+ID +   +   K   +P  PASLTKMMT Y
Sbjct: 20  TFVAASFFATTVQANAAIQQPELDNSAFILIDYDTGTVLAQKNAAQPFPPASLTKMMTSY 79

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           II + L S  L  N  I ++  A    +   S +Y+   T       +  +I +S ND S
Sbjct: 80  IIEQRLLSGALKENEPILMTPEAWCKGSSEESCMYVPVNTTAPVIDMLKGIIIQSGNDAS 139

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  + I GSE  FA LM+ +AKKIGM +T + NA+G+  +    +A D A L   + KN
Sbjct: 140 KAMAQHIGGSETTFADLMNEEAKKIGMTHTHFMNATGMPQEGHQASAEDLAKLAQAIIKN 199

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
             +YY  +S ++F Y      N N LL     +DG+KTG+T  +G+ +V S +  D  ++
Sbjct: 200 SKKYYPIYSQKQFTYNGITQGNRNALLFTDPTVDGLKTGHTDEAGYCLVASSKRGDMRLI 259

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRK 301
           +V+MG  ++QER  ++  L+         K     +K
Sbjct: 260 SVIMGTKSAQERADQSRNLLNWGFSNFATKIAAPAQK 296


>gi|254478674|ref|ZP_05092045.1| D-alanyl-D-alanine carboxypeptidase family [Carboxydibrachium
           pacificum DSM 12653]
 gi|214035361|gb|EEB76064.1| D-alanyl-D-alanine carboxypeptidase family [Carboxydibrachium
           pacificum DSM 12653]
          Length = 377

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/314 (27%), Positives = 159/314 (50%), Gaps = 11/314 (3%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMT 85
           + + +  ++   ++  +  +++      S+I+++    ++   K   +P  PAS+TK+MT
Sbjct: 2   SKKFLALLISTFLLFNTAYADVMNLKAKSAILMEAETGEILYEKDIHKPLPPASVTKVMT 61

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           L +  E + S K+ +  ++  SK A     +++YL+     T +  + A+   SAND S 
Sbjct: 62  LLLAIEAIDSGKIKVTDKVVTSKHAFDMGGTQIYLEVGEEMTVDDLMKAIAMNSANDASV 121

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E+I+G+E+ F  +M+ +AK++G +NT +KNA+GL ++  +TT  D A++   L K  
Sbjct: 122 ALAEYIAGTEENFVEMMNKRAKELGAKNTTFKNATGLPEEGHLTTVYDIAMISRELVK-H 180

Query: 206 PQYYKYFS--IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           P  +KY +  I   R     + N NKLL +   +DGIKTG T  + + +  + +  D  +
Sbjct: 181 PSIFKYLTNKIDSLRNGKFSLINTNKLLWRYQGVDGIKTGSTSEALYCMAATAKRGDTRL 240

Query: 264 VAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHRKDNLSSTSLKKS----LMIKKL 318
           +AVV G P S+ R  +  +L+       +T+K     + + L    + K     +    L
Sbjct: 241 IAVVFGAPDSETRFNETAKLLDYGFANFETVK--VASKGEVLGKIKVLKGNKEMVEGISL 298

Query: 319 KRTYSQFKKIDAKA 332
           K  Y   KK + K 
Sbjct: 299 KDEYVVVKKGEGKN 312


>gi|254360903|ref|ZP_04977049.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia
           haemolytica PHL213]
 gi|153092382|gb|EDN73445.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia
           haemolytica PHL213]
          Length = 392

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/257 (31%), Positives = 148/257 (57%), Gaps = 10/257 (3%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A +++A+   + I++D N  ++      D+ +YPASLTKMMT Y++ E L+S K+  +  
Sbjct: 32  APQINAQ---TYILMDYNSGEVLVSLNPDQRQYPASLTKMMTSYVVGEALKSGKVQNSDM 88

Query: 104 IPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
           + V++ +  Q     S ++L   +  +  + +  LI  S ND S A  E +SGS+  F  
Sbjct: 89  VIVTENSWAQKFPGSSLMFLDLNSKVSVGELMKGLIIVSGNDASVALAEHVSGSQAAFIN 148

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
            M+  A++ G++NT +    GL D  Q ++ARD AI+G  + ++ P+ YK ++ ++F+Y 
Sbjct: 149 EMNKYAQQFGLKNTHFTTVHGLDDPEQYSSARDMAIIGSHIIRDQPEEYKIYAEKEFQYN 208

Query: 221 -NRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
             +   N N LL  K   +DG+KTG+T  +G+N+V S    +  +++VVMG+PT + R+ 
Sbjct: 209 IKKPQPNRNGLLWDKTIQVDGMKTGHTDKAGYNLVASAINPNTRLISVVMGVPTYKGREV 268

Query: 279 KALELITSFL-EKKTLK 294
           ++ +L+       +T+K
Sbjct: 269 ESKKLLQWGFANFETIK 285


>gi|84387870|ref|ZP_00990884.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus
           12B01]
 gi|84377216|gb|EAP94085.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus
           12B01]
          Length = 373

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 8/261 (3%)

Query: 36  FLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFE 91
            +S   I+  S + + P   +   ++ID N   +   K       PASLTK+MT Y+  +
Sbjct: 1   MVSNAAIAAPSIVPSPPSLGAKGYVLIDFNSGDVLVEKNAHTKLNPASLTKLMTSYVAGQ 60

Query: 92  YLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            +Q   +  + Q+ +S+ A  +N    SK++++  T          LI +S ND S A  
Sbjct: 61  EMQRGNISADDQVRISENAWAKNFPDSSKMFIEVNTDVAMMDLYRGLIIQSGNDASVAIA 120

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E ++GS+  F  LM++ A  + ++NT + NA GL   +  +T  D A+LG  + ++ P  
Sbjct: 121 EHVAGSQDAFVDLMNSWATSLKLENTHFANAHGLDADDLYSTPYDIALLGRAIIRDLPDV 180

Query: 209 YKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           Y  +S R F Y      N N LL  +   +DG+KTGYT  +G+++ +S    +  ++AVV
Sbjct: 181 YGLYSERSFSYNGITQHNRNGLLRDRSLTVDGMKTGYTSGAGYSLASSATQGEMRLIAVV 240

Query: 268 MGMPTSQERDQKALELITSFL 288
           MG  + + R+  + +L++   
Sbjct: 241 MGASSVKSRESDSKQLLSYGF 261


>gi|218531093|ref|YP_002421909.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           chloromethanicum CM4]
 gi|218523396|gb|ACK83981.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           chloromethanicum CM4]
          Length = 418

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 71/265 (26%), Positives = 133/265 (50%), Gaps = 6/265 (2%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           ++  I+   +      ++        +I+ID +   +   K  DEP  PAS+ K+MT  I
Sbjct: 16  MLAAIVSAFLHPAPSRAQTFQTAAAHAILIDADSGSVLFEKAADEPFSPASMAKLMTAEI 75

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRSANDV 143
           +F  ++  +L ++T+  V++ A  +       S ++ +  +       +  LI +S ND 
Sbjct: 76  VFRAIKEGRLSMDTEFTVTEDAWRRGGAGGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDA 135

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           +    E ++G+E  FA +M+ +AK+IG+  + ++NA+G    +Q  TARD A +   L  
Sbjct: 136 AITIAENMAGTEDAFAGMMNQRAKEIGLTRSTFRNATGYSAPDQKVTARDMARIAQYLID 195

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
            +P++YK +S R+F +      N N LL      DG+KTGY   SG+ +  S       +
Sbjct: 196 TYPEFYKIYSEREFTWNKIKQQNRNPLLTLDIGADGLKTGYLEESGYALTGSAVQNGQRL 255

Query: 264 VAVVMGMPTSQERDQKALELITSFL 288
           + VV G+ T+++R  +A +++    
Sbjct: 256 IMVVSGLKTARDRAAEARKMMEWGF 280


>gi|146276594|ref|YP_001166753.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145554835|gb|ABP69448.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 473

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 97/270 (35%), Positives = 143/270 (52%), Gaps = 3/270 (1%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLY 87
           Q + K+LF+   ++  A    A P Y++IV+D    +         R +PASLTKMMTLY
Sbjct: 7   QYVRKMLFVVAAVVVAAQSAVAAP-YAAIVMDARTGETLYETNARTRLHPASLTKMMTLY 65

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           I F+ +Q  ++ L++ + V+K AA + PSKL LK          I A   +SAND +TA 
Sbjct: 66  ITFQAIQRGEISLDSMVTVAKNAAAEPPSKLGLKSGQRIALRYLIRAAAVKSANDAATAI 125

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E + GSE  F   M+  AK IGM N+ +KN  GL  +  ++TA D  +LG  L  +FPQ
Sbjct: 126 CEAVGGSEAAFTERMNRTAKAIGMTNSTFKNCHGLTAEGHLSTAYDMNMLGRRLFFDFPQ 185

Query: 208 YYKYFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           YY  FS R        ++N N + L+     DGIKTGYT  +G+N+  S +  +  I+A 
Sbjct: 186 YYNIFSRRTADAGVTTVSNTNRRFLDAYKGADGIKTGYTSPAGYNLTGSAQRGNKRIIAT 245

Query: 267 VMGMPTSQERDQKALELITSFLEKKTLKHQ 296
           V G  ++  R+ K  EL+     +     +
Sbjct: 246 VFGGKSTAHRNAKMAELLDLGFREAPANAK 275


>gi|20807763|ref|NP_622934.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516318|gb|AAM24538.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 377

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/314 (27%), Positives = 159/314 (50%), Gaps = 11/314 (3%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMT 85
           + + +  ++   ++  +  +++      S+I+++    ++   K   +P  PAS+TK+MT
Sbjct: 2   SKKFLALLISTFLLFNTAYADVMNLKAKSAILMEAETGEILYEKDIHKPLPPASVTKVMT 61

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           L +  E + S K+ +  ++  SK A     +++YL+     T +  + A+   SAND S 
Sbjct: 62  LLLAIEAIDSGKIKVTDKVVTSKHAFDMGGTQIYLEVGEEMTVDDLMKAIAMNSANDASV 121

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E+I+G+E+ F  +M+ +AK++G +NT +KNA+GL ++  +TT  D A++   L K  
Sbjct: 122 ALAEYIAGTEENFVEMMNKRAKELGAKNTTFKNATGLPEEGHLTTVYDIAMISRELVK-H 180

Query: 206 PQYYKYFS--IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           P  +KY +  I   R     + N NKLL +   +DGIKTG T  + + +  + +  D  +
Sbjct: 181 PSIFKYLTNKIDSLRNGKFSLINTNKLLWRYKGVDGIKTGSTSEALYCMAATAKRGDTRL 240

Query: 264 VAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHRKDNLSSTSLKKS----LMIKKL 318
           +AVV G P S+ R  +  +L+       +T+K     + + L    + K     +    L
Sbjct: 241 IAVVFGAPDSETRFNETAKLLDYGFANFETVK--VASKGEVLGKIKVLKGNKEMVEGISL 298

Query: 319 KRTYSQFKKIDAKA 332
           K  Y   KK + K 
Sbjct: 299 KDEYVVVKKGEGKN 312


>gi|188582286|ref|YP_001925731.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi
           BJ001]
 gi|179345784|gb|ACB81196.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi
           BJ001]
          Length = 418

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 69/265 (26%), Positives = 134/265 (50%), Gaps = 6/265 (2%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           ++  +L   +      ++        +I++D     +   K  DEP  PAS+ K+MT  I
Sbjct: 16  MLAAVLNAVLPPAPARAQTFQTAAAHAILVDAESGSVLFEKAADEPFSPASMAKLMTAEI 75

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRSANDV 143
           +F  ++  +L ++T+  V++ A  +       S ++ +  +       +  LI +S ND 
Sbjct: 76  VFRAIKEGRLSMDTEFTVTEDAWRRGGAGGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDA 135

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           +    E ++G+E+ FA +M+ +AK+IG+  + ++NA+G    +Q  TARD A +   L  
Sbjct: 136 AITIAENMAGTEEAFAGMMNQRAKEIGLTRSTFRNATGYSAPDQKVTARDMARIAQHLID 195

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           ++P++YK +S R+F +      N N LL      DG+KTGY   SG+ +  S       +
Sbjct: 196 SYPEFYKIYSEREFTWNKIKQQNRNPLLTLDIGADGLKTGYLEESGYALTGSAVQNGQRL 255

Query: 264 VAVVMGMPTSQERDQKALELITSFL 288
           + VV G+ T+++R  ++ +++    
Sbjct: 256 IMVVSGLKTARDRAAESRKMMEWGF 280


>gi|15964646|ref|NP_384999.1| hypothetical protein SMc00068 [Sinorhizobium meliloti 1021]
 gi|307304223|ref|ZP_07583975.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           BL225C]
 gi|307320528|ref|ZP_07599943.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           AK83]
 gi|15073824|emb|CAC45465.1| Probable D-alanyl-D-alanine carboxypeptidase [Sinorhizobium
           meliloti 1021]
 gi|306893804|gb|EFN24575.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           AK83]
 gi|306902691|gb|EFN33284.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           BL225C]
          Length = 409

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/257 (38%), Positives = 158/257 (61%), Gaps = 1/257 (0%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYL 93
           L ++ I +     + A    +S+V+D    ++      D   +PASLTKMMTLY+ FE L
Sbjct: 6   LAMATIAVLFFGAVQAMAGNASLVVDARTGRVLSAENPDTLHHPASLTKMMTLYMTFEAL 65

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
              ++   T +PVS TAA + P+KL +K     T E+ +  +I RSAND + A  E + G
Sbjct: 66  HRGQIAWKTPVPVSATAARKPPTKLGVKAGGTITVEEAVYGMIVRSANDAAAAMAERLGG 125

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           SE+ FA +M+ KA+++GM  T + NASGL    Q+TTARD A L + L +++P+ Y+ FS
Sbjct: 126 SEEGFARMMNAKARQLGMNRTFFVNASGLPASEQVTTARDMARLAVALMRHYPREYRLFS 185

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           ++ F +R R+I  HN L+ +   +DGIKTGYTR SG+N+V+++  ++  ++ VV+G  ++
Sbjct: 186 VQSFAFRGRVIRGHNNLMYRYQGMDGIKTGYTRASGYNLVSAVNDRNRRLIGVVLGGRSA 245

Query: 274 QERDQKALELITSFLEK 290
           + RD+K   L+   L +
Sbjct: 246 RSRDEKMAALLDQHLGR 262


>gi|254487632|ref|ZP_05100837.1| D-alanyl-D-alanine carboxypeptidase protein [Roseobacter sp.
           GAI101]
 gi|214044501|gb|EEB85139.1| D-alanyl-D-alanine carboxypeptidase protein [Roseobacter sp.
           GAI101]
          Length = 470

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 97/254 (38%), Positives = 142/254 (55%), Gaps = 3/254 (1%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +     A P Y++ VID    ++   +  E R +PASLTKMMTLYI FE ++  ++ L++
Sbjct: 3   LPLSALAAP-YAAYVIDARSGEVLHSRNAETRLHPASLTKMMTLYIAFEAIKRGEISLDS 61

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           Q+ +S  AA++ PSKL LK          I A   +SAND +TA GE I GSE KFA  M
Sbjct: 62  QVKISSHAASEPPSKLGLKSGQTIALRYLIRAAAVKSANDAATAIGEAIEGSEAKFARRM 121

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
           +  AK +GM  T +KNA GL +   ++TARD  ++G  L  +FP+YY  FS        R
Sbjct: 122 NRTAKALGMTKTTFKNAHGLTEAGHMSTARDMTMMGRHLLYDFPEYYNLFSRITADAGVR 181

Query: 223 IITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
            +++ N + L+     DGIKTGYTR +GFN+V S    ++ ++  V G  ++  R+ K  
Sbjct: 182 KVSHTNRRFLSSYKGADGIKTGYTRAAGFNLVASAERGNERVIVTVFGGTSTSARNAKVA 241

Query: 282 ELITSFLEKKTLKH 295
           EL+     +   K 
Sbjct: 242 ELMDLGFRRAPSKA 255


>gi|170747925|ref|YP_001754185.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654447|gb|ACB23502.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 429

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/274 (28%), Positives = 140/274 (51%), Gaps = 10/274 (3%)

Query: 56  SIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +I+ID +   +   K  + R+ PAS+ K+MT  I+FE L+S +L ++T+  V++ A  + 
Sbjct: 47  AILIDADSGSVLFEKAADERFSPASMAKLMTTDIVFEALKSGRLSMDTEFTVTEDAWKRG 106

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S ++ +  +       +  LI +S ND +    E ++GSE+ FA LM+ +AK+I
Sbjct: 107 GAGGGGSSMFAQVNSRIKMADLLRGLIVQSGNDAAITIAENMAGSEEAFAGLMNQRAKEI 166

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+ N+ ++NA+G    +Q  TARD A L + +   +P YYK FS ++F +      N N 
Sbjct: 167 GLTNSTFRNATGYSAPDQKVTARDMAKLALHIIDTYPDYYKIFSEKEFTWNKIRQQNRNP 226

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL- 288
           LL      DG+KTGY   SG+ +  S       +V VV G+ T+++R  ++ +L+     
Sbjct: 227 LLALDIGADGLKTGYLEESGYALTGSAVQNGQRLVLVVSGLKTARDRASESRKLMEWGFR 286

Query: 289 ---EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
               ++     +T  + ++         ++ K  
Sbjct: 287 AFEPRQVFAPGETVAEASVFGGQSGSVPLVAKKP 320


>gi|27380267|ref|NP_771796.1| D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium japonicum USDA
           110]
 gi|27353431|dbj|BAC50421.1| blr5156 [Bradyrhizobium japonicum USDA 110]
          Length = 611

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 111/245 (45%), Positives = 160/245 (65%), Gaps = 1/245 (0%)

Query: 52  PKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           PK++SI++D N   +      D  R+PASLTK+MTLY++FE L+S K+ L+T++PVS+ A
Sbjct: 57  PKFASIIVDGNSGSVLQATSPDGIRHPASLTKIMTLYLLFERLESGKMKLDTEMPVSQHA 116

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A Q+P+KL L+       E  I  L+TRSAND +    E I+G E  FA +M+ KA+ +G
Sbjct: 117 ADQDPTKLNLRAGQTIRVEDAIKGLVTRSANDAAVVIAEAIAGDEDDFAQMMTRKARSLG 176

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M  T+Y+NA+GL +  Q+TTARDQA LG  +++ FP+YY+YF+   F +R + I NHN L
Sbjct: 177 MSKTVYRNANGLPNDEQVTTARDQATLGRAIQERFPRYYRYFATSTFNWRGQSIRNHNHL 236

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L  +  +DGIKTGYTR SGFN+VTS+R  +  ++ VV+G  +   RD     L+   L+K
Sbjct: 237 LGSVEGVDGIKTGYTRASGFNLVTSMRRGNRHLIGVVLGGRSGGSRDAIMRNLLAENLDK 296

Query: 291 KTLKH 295
               H
Sbjct: 297 GATSH 301


>gi|217976731|ref|YP_002360878.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris
           BL2]
 gi|217502107|gb|ACK49516.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris
           BL2]
          Length = 407

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/282 (28%), Positives = 127/282 (45%), Gaps = 11/282 (3%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHA--KPKYSSIVIDVNKNQMTGFKQ- 71
           +  P   ++I R   LMG  +   +   S  +   A       +I+IDV    +   K  
Sbjct: 1   MIVPNPPLHILR---LMGLAILAGVCFGSGPASAQAIQTSVPHAILIDVETGSVLFEKDA 57

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYF 126
           D P  PAS  K+MT  ++F  L   ++ L+ +  +S+ A          S ++    +  
Sbjct: 58  DAPVTPASTVKVMTADVVFGELAQGRIKLDDEFTISEHAWRTGGAPARASSMFAALNSRV 117

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
             E  I  L+  S ND + A  E ++GSE  FA LM  +  ++G+  +++ N  G  D  
Sbjct: 118 RVEDLIRGLVIDSGNDAAIALAEGVAGSETAFAGLMMKRGHELGLTRSVFTNPWGKDDPE 177

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           Q  T R+  IL   +   +P YYKYF  ++F +     TN N LL      DG+KTG   
Sbjct: 178 QKVTPREMTILAAHVIATYPDYYKYFGEKEFTWNKIRQTNRNPLLTMDIGADGLKTGNID 237

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            SGF +V S       ++  + G  T++ER ++A +L     
Sbjct: 238 ASGFGLVGSAVQNGQRLILALYGATTAKERAEEARKLFLWAF 279


>gi|114765840|ref|ZP_01444933.1| D-alanyl-D-alanine carboxypeptidase family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114541839|gb|EAU44876.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius sp.
           HTCC2601]
          Length = 486

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 93/250 (37%), Positives = 139/250 (55%), Gaps = 3/250 (1%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
              A P Y+++V+D    ++   +  D P +PASLTKMMTLY+ FE ++  +L ++T + 
Sbjct: 2   SALAAP-YAAMVVDARSGEVLHSENADTPLHPASLTKMMTLYLAFEAVEHGELTMDTVVT 60

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           +S+ AA + PSKL L+          + A   +SAND +TA GE ISGSE  FA  M+  
Sbjct: 61  ISRNAAAEPPSKLGLRSGQKIKLRYLVRAAAVKSANDAATAIGEAISGSEAAFARRMNRT 120

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
           AK +GM  T +KNA+GL +   ++TARD  +LG  +  ++PQYY  FS          + 
Sbjct: 121 AKAMGMSRTTFKNANGLTETGHMSTARDMTLLGRHMIYDYPQYYNLFSRITTHAGMHEVY 180

Query: 226 NHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N + L      DGIKTGYTR +GFN+V S     + +V  V G  ++  R+ K  EL+
Sbjct: 181 NTNRRFLGAYKGADGIKTGYTRAAGFNLVASAERGSERVVTTVFGGRSTASRNAKVAELM 240

Query: 285 TSFLEKKTLK 294
               ++   +
Sbjct: 241 DLGFKRAKTR 250


>gi|240139670|ref|YP_002964147.1| putative penicillin binding protein,
           beta-lactamase/transpeptidase-like superfamily
           [Methylobacterium extorquens AM1]
 gi|240009644|gb|ACS40870.1| putative penicillin binding protein,
           beta-lactamase/transpeptidase-like superfamily
           [Methylobacterium extorquens AM1]
          Length = 403

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 71/265 (26%), Positives = 133/265 (50%), Gaps = 6/265 (2%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           ++  I+   +      ++        +I+ID +   +   K  DEP  PAS+ K+MT  I
Sbjct: 1   MLAAIVSAFLHPAPARAQTFQTAAAHAILIDADSGSVLFEKAADEPFSPASMAKLMTAEI 60

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRSANDV 143
           +F  ++  +L ++T+  V++ A  +       S ++ +  +       +  LI +S ND 
Sbjct: 61  VFRAIKEGRLSMDTEFTVTEDAWRRGGAGGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDA 120

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           +    E ++G+E  FA +M+ +AK+IG+  + ++NA+G    +Q  TARD A +   L  
Sbjct: 121 AITIAENMAGTEDAFAGMMNQRAKEIGLTRSTFRNATGYSAPDQKVTARDMARIAQYLID 180

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
            +P++YK +S R+F +      N N LL      DG+KTGY   SG+ +  S       +
Sbjct: 181 TYPEFYKIYSEREFTWNKIKQQNRNPLLTLDIGADGLKTGYLEESGYALTGSAVQNGQRL 240

Query: 264 VAVVMGMPTSQERDQKALELITSFL 288
           + VV G+ T+++R  +A +++    
Sbjct: 241 IMVVSGLKTARDRAAEARKMMEWGF 265


>gi|150397770|ref|YP_001328237.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae
           WSM419]
 gi|150029285|gb|ABR61402.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae
           WSM419]
          Length = 376

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 92/311 (29%), Positives = 164/311 (52%), Gaps = 11/311 (3%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPA 78
            + +   +  MG +     I ++      A P+   +VIDV+  ++    QD  +  YPA
Sbjct: 5   GLSVGDRLGRMGTLAGACAIFLAAVLPASANPR---LVIDVDTLKV-YEHQDIFQKWYPA 60

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           SLTK+MT YI F  +++ +L L + + ++K AA++ PSK++ K     T +  +  ++ +
Sbjct: 61  SLTKLMTAYITFRAIKADQLTLESPVVMTKNAASEPPSKMFYKPGQKMTLDSALKMMLVK 120

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           SANDV+ A  E + G+E+ F   M+ +A++IGM ++ + N  GL  + Q TTARD A+L 
Sbjct: 121 SANDVAVAIAETVGGTEQAFIERMNAEARRIGMTSSRFINPHGLPGEGQYTTARDLAVLA 180

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
           + L++ FPQY  YF++  F    +   N+N L+ +    DG+KTG+   SGFN V+S   
Sbjct: 181 VTLKREFPQYASYFALEGFTTGKKDYPNYNMLIGRFEGADGMKTGFICASGFNQVSSAVR 240

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFL-----EKKTLKHQQTHRKDNLSSTSLKKSL 313
               +V+VV+G  +   R  ++  L+   L     +K +L     + +       + + +
Sbjct: 241 SGRRVVSVVLGEDSLGARADESARLLQKALTTVATDKPSLAEIPPYGESREVVADVSREI 300

Query: 314 MIKKLKRTYSQ 324
             K+  +  S+
Sbjct: 301 CSKQAAKVRSE 311


>gi|153009485|ref|YP_001370700.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi
           ATCC 49188]
 gi|151561373|gb|ABS14871.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi
           ATCC 49188]
          Length = 404

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 110/296 (37%), Positives = 169/296 (57%), Gaps = 6/296 (2%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMM 84
           R  +L+  +   + ++ + A    A    S +V D +  ++ G       R PASL KMM
Sbjct: 7   RLSRLIASLALGASVLCTSA----AMANTSWVVFDADSGRILGQDDANVQRAPASLAKMM 62

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TLY+ FE L++ +LH +  +PVSK AA +   KL+LK     T    I  +I  SAND +
Sbjct: 63  TLYLAFEGLKTGRLHWDDAMPVSKNAAAKVRMKLWLKPGETITVRDAINGMIIVSANDAA 122

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-NQITTARDQAILGILLRK 203
           T  GE+I+GSE  F  LM+ +A++IGM++T + N SGL  K  Q+TTARD A+LG+ LR+
Sbjct: 123 TVMGEYIAGSEAAFGRLMTQRARQIGMKSTFFVNPSGLTAKSTQLTTARDMAVLGMSLRR 182

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           +FP+ Y+ FS R F +R+R+   HN L+ +   +DGIKTGYT  SG+N+V+S    D  +
Sbjct: 183 DFPEQYELFSQRSFTFRDRVRNGHNNLMYRYQGVDGIKTGYTDVSGYNLVSSAVINDKHL 242

Query: 264 VAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
           V VV+G  ++++RD +  +L+T F  + T    Q          + + +    K  
Sbjct: 243 VGVVLGAGSARQRDDQMAKLLTRFGTEGTEATGQLVAMAKPQPVAKQAAPAQPKAD 298


>gi|289578311|ref|YP_003476938.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           italicus Ab9]
 gi|289528024|gb|ADD02376.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           italicus Ab9]
          Length = 381

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 93/315 (29%), Positives = 162/315 (51%), Gaps = 10/315 (3%)

Query: 30  LMGKILFLSIIM--ISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTL 86
           L+  I+ +S I+   + A  L+ K K S+I+++ N  Q+   K    P  PAS+TK+MTL
Sbjct: 9   LVSVIIAISFILDATAYADTLNLKAK-SAILMEANTGQILYEKDSHKPLPPASVTKVMTL 67

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            +  E + S K+ ++ ++  SK A     +++YL+     T +  + A+   SAND S A
Sbjct: 68  LLAIEAIDSGKIKISDKVVTSKHAFDMGGTQIYLEIGEEMTVDDLMKAIAMNSANDASVA 127

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E+I+G+E+ F  +M+ +AK++G +NT +KNA+GL D+  +T+  D A++   L K   
Sbjct: 128 LAEYIAGTEENFVEIMNKRAKELGAKNTTFKNATGLPDEGHLTSVYDIAMISRELVK-HE 186

Query: 207 QYYKYFSIR--KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
             +KY + +    R     + N NKLL +   +DGIKTG T  + + +  + +  D  ++
Sbjct: 187 SIFKYLTNKLDSLRNGKFSLINTNKLLWRYKGVDGIKTGSTSEALYCMAATAKRADTRLI 246

Query: 265 AVVMGMPTSQERDQKALELITSFL-EKKTLK-HQQTHRKDNLSSTSLKKSLMIKKL-KRT 321
           AVV G P S+ R  +  +L+       +++K   +     N+     KK  +        
Sbjct: 247 AVVFGAPDSETRFSETAKLLDYGFANYESVKIASKGQSFGNVKVLKGKKETVSGVCHDDE 306

Query: 322 YSQFKKIDAKAHSTQ 336
           Y   KK + K   T+
Sbjct: 307 YILIKKGEGKNIKTE 321


>gi|154253549|ref|YP_001414373.1| Serine-type D-Ala-D-Ala carboxypeptidase [Parvibaculum
           lavamentivorans DS-1]
 gi|154157499|gb|ABS64716.1| Serine-type D-Ala-D-Ala carboxypeptidase [Parvibaculum
           lavamentivorans DS-1]
          Length = 384

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 73/282 (25%), Positives = 139/282 (49%), Gaps = 10/282 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHA--KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASL 80
           + R I      L L++  +++     A       ++++D     +   K  DE  +PAS+
Sbjct: 1   MNRFISATAFALSLALTAVALPRGAFAFETAAEYAVLMDYESGSILWGKNADEQMHPASM 60

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILAL 135
           +K+MTL ++F  ++   + L+ +  VS+ A  +       S ++    T       +  +
Sbjct: 61  SKLMTLDMLFGAIRDGSVSLDDEFKVSENAWRKGGAASGSSTMFADLNTVVPVHAILRGI 120

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I +S ND   A  E +SGSE  FA  ++ + K IG+ N+ + N++G  D++ + TA D A
Sbjct: 121 IVQSGNDACIATAEALSGSESAFAEALTERGKAIGLTNSNFTNSTGWPDEDHLMTAHDLA 180

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           +L   +   FP++Y  F    F +      N N  L    ++DG+KTG+T  SG+ +V S
Sbjct: 181 VLARHIIMEFPEFYPIFKETDFTWNGIKQGNRNPALYLDPSVDGLKTGHTEASGYGLVAS 240

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQ 297
            +  D  ++ V+ G+P+ + R  +++ L+      ++ KH +
Sbjct: 241 AKRGDQRLILVLNGLPSERARADESVRLLDWGF--RSFKHYK 280


>gi|160892702|ref|ZP_02073492.1| hypothetical protein CLOL250_00232 [Clostridium sp. L2-50]
 gi|156865743|gb|EDO59174.1| hypothetical protein CLOL250_00232 [Clostridium sp. L2-50]
          Length = 464

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 124/250 (49%), Gaps = 9/250 (3%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           I+++     +   K  DE R PAS+TK+MTL ++FE +++    ++  + VS+ AA+   
Sbjct: 114 ILMEATTGTVLYEKNADEARKPASVTKVMTLLLVFEAMKAGDYQMSDIVTVSEHAASMGG 173

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S+ + +     T E  I  +I  S ND + A  EF +GSE+ F   M+++AK++GM++T 
Sbjct: 174 SQCFFETGEQQTVEDMIKCIIIASGNDAAVAMAEFTAGSEEAFVQRMNDRAKELGMEHTH 233

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--------ITNH 227
           + NA GL      T+ARD AI+   L    P+  KY  I      ++         + N 
Sbjct: 234 FVNACGLDADGHETSARDIAIMSRQLIDEHPEILKYSGIWMDSIIHKTARGESRFDLANT 293

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           NK LN      G+KTGYT  + + +  +       ++AV+MG  T   R+++  +L    
Sbjct: 294 NKFLNIYTGATGLKTGYTATAKYCMSATANRNGITLIAVIMGAETKDIRNKEVCKLFDYG 353

Query: 288 LEKKTLKHQQ 297
                L   +
Sbjct: 354 YANCNLYKDE 363


>gi|154245869|ref|YP_001416827.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter
           autotrophicus Py2]
 gi|154159954|gb|ABS67170.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter
           autotrophicus Py2]
          Length = 508

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 149/269 (55%), Gaps = 6/269 (2%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYS--SIVIDVNKNQMTGFKQD-EPRYPASL 80
            +R + L    L  +++ + +A      P  +   ++++ +  ++   K+   P +PAS+
Sbjct: 18  ARRGLCLG---LAAAVLGVGLAGSFLVHPAQANPVLLVEADTGRVIEQKEAGRPWHPASV 74

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           TK+MT+Y+    +++ +L L+T + VS  AA+Q PSK+  K  T  T +  +  ++ +SA
Sbjct: 75  TKLMTVYVALNAVKNGRLTLDTPLTVSAAAASQQPSKMGFKPGTVVTLDNAMKMVLVKSA 134

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND++   GE ++GS   F   M+  A  +GM  T ++N +GL D +QITTARD AIL   
Sbjct: 135 NDMAWVVGEGVAGSMPAFVAEMNATAAHLGMSGTHFENPNGLPDPDQITTARDLAILARA 194

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           +  +FP++   F I   +    ++ N+N+L+++    DG+KTG+   SG+N+V +    +
Sbjct: 195 IIYHFPEHEALFRIPAIKIGKAVLRNYNRLIDRYPGADGMKTGFVCGSGYNLVATATRGN 254

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLE 289
             ++AV++G  +   R ++A  +     +
Sbjct: 255 KRLIAVILGARSGTARTEQAALMFEKGFQ 283


>gi|47779364|gb|AAT38593.1| predicted penicillin-binding protein 6 precursor [uncultured gamma
           proteobacterium eBACHOT4E07]
          Length = 382

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 76/314 (24%), Positives = 151/314 (48%), Gaps = 16/314 (5%)

Query: 29  QLMGKILFLSIIMISMASELHAKPK--YSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMT 85
           Q+   +L +S I++  +   +A      S ++I+ + N +           PAS+TK+MT
Sbjct: 3   QIFLFLLCVSNIVVGQSFVPNAPELNLKSYMLIEPDTNTVIAESNASGLIEPASMTKVMT 62

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
            Y++ + +++  + L+  + +S+ A     SK++++     +    +  +I +S ND S 
Sbjct: 63  AYVVADQIKNDLISLDDSVLISEKAWRMGGSKMFIEVGKRVSILDLLKGIIIQSGNDASV 122

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E++ G+E  F  LM++ A  +GM +T + N++GL ++  +T+ARD A L      NF
Sbjct: 123 AIAEYVGGTEAGFVDLMNSYAGALGMADTTFINSTGLPNEGHLTSARDLATLTSNFMTNF 182

Query: 206 PQYYKYFSIRKFRYRNRI--ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           P  Y  F  ++F Y        N NKLL +  + DG+KTG+T ++G+ ++ S +  +  +
Sbjct: 183 PDIYALFKEKEFEYGGITGNKYNRNKLLWRDESSDGVKTGHTSSAGYCLIGSAKRGNMRL 242

Query: 264 VAVVMGMPTSQERDQKALELITSFL-----------EKKTLKHQQTHRKDNLSSTSLKKS 312
           + VV G  T+         L+               +K+    +    K++  S  + + 
Sbjct: 243 ITVVAGSDTANNSFSDTQRLLEYGFRFYATQKYFDADKEYTTAKVWGGKNDNISLGVVED 302

Query: 313 LMIKKLKRTYSQFK 326
           + I   + ++   K
Sbjct: 303 ISITLPRTSFKNVK 316


>gi|150390291|ref|YP_001320340.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus
           metalliredigens QYMF]
 gi|149950153|gb|ABR48681.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus
           metalliredigens QYMF]
          Length = 387

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 88/325 (27%), Positives = 157/325 (48%), Gaps = 23/325 (7%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           ++ ++LM   L L  ++    + L A+P      + I+ID    ++   K   E   PAS
Sbjct: 4   KKFLKLMSGCLILMTVLALNTTTLLAQPFELQSKAGILIDAATGEVLYEKNIHESLPPAS 63

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MT+ +  E L + ++ LN ++ VS+ A++   ++LYL+     T E+ +  +  RS
Sbjct: 64  VTKIMTMLLTMEALDTNRITLNDKVVVSERASSMGGTQLYLEPGEVKTVEELMKGIAIRS 123

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AND   A GE ISGSE  F   M+ +AK++GM+NT + N +GL  +  +T+  D A++  
Sbjct: 124 ANDACVAIGEHISGSEDAFVQKMNERAKELGMKNTTFINTNGLPAEGHVTSVYDIALMSK 183

Query: 200 LLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            L K +P   K+ +              + + N N+L+       G+KTG+T+ +   + 
Sbjct: 184 ELLK-YPDVQKWLTTWMDTVVVGKRESTQELVNTNRLIRTYKGATGLKTGFTQAALHCLS 242

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL---------EKKTLKHQQTHRK--D 302
            S    ++  +AVV+  PTSQ R  +A +L+             E+         +K  +
Sbjct: 243 ASATRGNNTFIAVVLAAPTSQVRFSEAAQLLDFGFANYNTIEIAERDVFIGNINIQKGQE 302

Query: 303 NLSSTSLKKSLMIKKLKRTYSQFKK 327
           ++     K+ L +   K    Q +K
Sbjct: 303 SIVRGVAKEDLKVLVKKGEEDQVQK 327


>gi|15966442|ref|NP_386795.1| putative penicillin-binding protein [Sinorhizobium meliloti 1021]
 gi|307300521|ref|ZP_07580301.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           BL225C]
 gi|307318386|ref|ZP_07597821.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           AK83]
 gi|15075713|emb|CAC47268.1| Putative penicillin-binding protein [Sinorhizobium meliloti 1021]
 gi|306896068|gb|EFN26819.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           AK83]
 gi|306904687|gb|EFN35271.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           BL225C]
          Length = 360

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 91/295 (30%), Positives = 157/295 (53%), Gaps = 11/295 (3%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFEYLQ 94
              + ++ A    A P+   +VIDV+  ++    QD  +  YPASLTK+MT Y  F  +Q
Sbjct: 5   ACAVFLAAALPASANPR---LVIDVDTLKV-YEHQDIFQRWYPASLTKLMTAYTTFRAIQ 60

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
           + +L L + + ++K AA++ PSK++ K     T +  +  ++ +SANDV+ A  E + GS
Sbjct: 61  AGQLTLQSPVVMTKNAASEPPSKMFYKPGQKMTLDSALKMMLIKSANDVAVAIAETVGGS 120

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           E+ F   M+ +A++IGM ++ + N +GL  + Q TTARD A+L + L++ FPQY  YF++
Sbjct: 121 EQAFIEKMNAEARRIGMTSSHFINPNGLPGQGQYTTARDLAVLAVTLKREFPQYASYFAL 180

Query: 215 RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
             F    +   N+N L+ +    DG+KTG+   SGFN V+S       +V+VV+G  +  
Sbjct: 181 EGFTTGKKDYPNYNMLIGRFDGADGMKTGFICASGFNQVSSASRGGRRVVSVVLGEDSLA 240

Query: 275 ERDQKALELITSFLE-----KKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
            R  ++  L+          K +L     + +       + K +  K+  +  S+
Sbjct: 241 ARADESARLLQMAFTTVSTGKPSLAEIVPYGETRGVVADISKEICSKQAAKVRSE 295


>gi|225572270|ref|ZP_03781134.1| hypothetical protein RUMHYD_00564 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040275|gb|EEG50521.1| hypothetical protein RUMHYD_00564 [Blautia hydrogenotrophica DSM
           10507]
          Length = 414

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 71/250 (28%), Positives = 131/250 (52%), Gaps = 10/250 (4%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           ++++ +  ++   K+ D  R PAS+TK+MTL +IF+ +++  L+++  +  S  A +   
Sbjct: 59  VLMEASTGEILYEKEKDTKRSPASITKIMTLILIFDAIENGSLNMDDMVTTSAYAKSMGG 118

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S++YL+E      E  I  ++  S ND S A  E I+GSE++F   M+++A+ +GM+NT 
Sbjct: 119 SQVYLEEGETQDVETMIKCIVIASGNDASVAMAEHIAGSEEEFVKKMNDRAQSLGMKNTH 178

Query: 176 YKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--------ITN 226
           +++  GL D +N  TTA D A++   L  ++P+  +Y SI      ++         +TN
Sbjct: 179 FEDCCGLTDSENHYTTAYDVALMSRELITHYPKILEYSSIWMDTITHKTRQGTSEFGLTN 238

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            NKL+       G+KTG T  + + +    +     +++VVM  P  + R   A  +   
Sbjct: 239 TNKLIRSYEGCVGLKTGSTSLAKYCVSAVAQKNGMSLISVVMAAPDYKVRFSDAAAMFNY 298

Query: 287 FLEKKTLKHQ 296
              K +L  +
Sbjct: 299 GFAKCSLYQE 308


>gi|323702537|ref|ZP_08114200.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532511|gb|EGB22387.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 405

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 77/281 (27%), Positives = 143/281 (50%), Gaps = 16/281 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I++D N  Q+   K  D  R  AS+TK+MT+ +I E     K+ L  ++  S+ A 
Sbjct: 57  AESAILMDYNSGQVLFQKDPDTRRPMASVTKLMTMLLICEAEAQGKIKLTDKVVASEHAC 116

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S+++L+     T ++ ++++ T SAND S A  E I+GSE+ F  +M+ KA+ +G+
Sbjct: 117 SMGGSQIFLEPGEQLTIKEMLISIATGSANDASVAMAEQIAGSEEAFVAMMNEKAQAMGL 176

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIITNHNK 229
           +NT + N +GL  +N  T+ARD A +     + +P + +   I ++  R     + N NK
Sbjct: 177 KNTHFSNPTGLPVENHYTSARDMAKVLRECLR-YPVFREVSKIYEYDLRGGEFKLWNTNK 235

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           LL      D  KTG+T  + F +  S +     +++VV+G P  +   Q+ +++      
Sbjct: 236 LLKWYPGTDAGKTGWTNEAKFCLAASAKRDGLRLISVVLGCPMPKTHFQETMKIFNYGFA 295

Query: 290 KKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
           +        ++  NL+    ++  +IK +K      +K+  
Sbjct: 296 R--------YKAVNLA----EEGQVIKVIKVDKGDLEKVKV 324


>gi|255019743|ref|ZP_05291820.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC
           51756]
 gi|254970811|gb|EET28296.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC
           51756]
          Length = 388

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 79/296 (26%), Positives = 137/296 (46%), Gaps = 14/296 (4%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKY----------SSIVIDVNKNQMTGFK 70
           S+  +R    +  I       IS+A+    +             S +++D +  Q+   K
Sbjct: 2   SVPFRRAAIALLTIWITLFARISLAATPTPQIPIPPAPALPAVASYVLMDYDSGQIIAAK 61

Query: 71  QDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE 129
           ++   R PASLTK+MT Y+ ++ + +  L  +  + VS TA     S+++++     T +
Sbjct: 62  EENLHRAPASLTKLMTAYLTYQAMANGSLRPDETVNVSNTAWKTGGSRMFIQPGLPVTVD 121

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           Q +  L+  S ND + A  E + GS+  F  LM++ A+++ + NT Y N +GL D N  T
Sbjct: 122 QLLHGLLIDSGNDAAVALAETVGGSQAGFVTLMNDAARQLHLDNTHYSNVNGLPDSNLYT 181

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
           TA D A L   L + +PQ       + + Y      + N +L +  ++DG+KTG T  SG
Sbjct: 182 TALDVAKLSRALIQQYPQVIAITRQKSYTYNKITQRSWNPVLFRDPSVDGLKTGLTDESG 241

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKD 302
           + I  + +     ++AVV+G P+          L+     F E   L    T   +
Sbjct: 242 YCIDATAQRNGRRLIAVVLGGPSWSGSTNAVESLLNYGYRFFEDHELYKPMTEVGE 297


>gi|89099052|ref|ZP_01171931.1| DacF [Bacillus sp. NRRL B-14911]
 gi|89086182|gb|EAR65304.1| DacF [Bacillus sp. NRRL B-14911]
          Length = 371

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 82/288 (28%), Positives = 148/288 (51%), Gaps = 8/288 (2%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+I+ +   +   +  +E   PAS+TK+MT+ +I E +   KL ++ +I  S+ AA+ 
Sbjct: 21  SAILIERDTGAVLYEQNSNEQLPPASMTKIMTMLLIMEAIDKGKLSMDEKIRASEYAASM 80

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+     TTEQ +  +   S ND S A  E ++GSE++F  LM+ KAK +G+++
Sbjct: 81  GGSQIFLEPGEEMTTEQMLKGIAIGSGNDASVAMAERLAGSEEEFVKLMNKKAKDLGLKD 140

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI-----RKFRYRNRIITNHN 228
           TI+KNA+GL      +TA D A++   L K +    K+        R+   +   + N N
Sbjct: 141 TIFKNATGLPVTEHYSTAHDMALMAKELLK-YEGITKFTGTYEAYLREDTDKKFWLVNTN 199

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +L+     +DG+KTG+T  + + +  +       ++AVV G PTS+ER+ +  +++    
Sbjct: 200 RLVRFYPGVDGLKTGFTNEAKYCLTATAEKNGMRVIAVVFGAPTSKERNAQVTKMLDYAF 259

Query: 289 EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
            +    H    R + L S  + K  + +    T      +  K   T+
Sbjct: 260 SQYET-HPMYKRNEALGSAKVSKGEIKQVEALTSEPISLLTKKGEDTK 306


>gi|190571728|ref|YP_001976086.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|190358000|emb|CAQ55464.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
          Length = 368

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 84/288 (29%), Positives = 145/288 (50%), Gaps = 6/288 (2%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLY 87
           +L+  +L       S + +   K K  +IV+D+  +         E   P+S++K+MTLY
Sbjct: 4   KLVTLLLIFIFPFYSYSYQFRTKAKQ-AIVLDLASDSFIFEHNSREKMAPSSMSKLMTLY 62

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + F+YL++  + +  +  VS+ A  +  S ++LKE  + T ++ +  +   S ND   A 
Sbjct: 63  VAFDYLKAGIIKMEDKFRVSRKAWERKGSSMFLKEGQFVTVKELLEGITIASGNDACIAL 122

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E I+GSE+ F   M+  A+ + + ++ + N+SG  D+N   +A+D   L   +  +FP+
Sbjct: 123 AEGIAGSEENFVAEMNEVAQDLNLNDSHFVNSSGWPDENHFMSAKDLVTLAKRIFTDFPE 182

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           YY  FS +   Y + +  N N LL     +DG+KTG+T   G+ I+ S +  D  I AVV
Sbjct: 183 YYDLFSEQYLTYNDIVQKNKNLLLFHDIGVDGLKTGHTSAGGYGIIVSAKRNDRRIFAVV 242

Query: 268 MGMPTSQERDQKALEL----ITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
            G+ T +ER ++A  L    +  F  KK         + N+     KK
Sbjct: 243 NGLDTEKERIEEAKRLIQYSLNHFNTKKIFAKDSVVEEINIVYGKDKK 290


>gi|291536082|emb|CBL09194.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis M50/1]
          Length = 348

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 78/264 (29%), Positives = 133/264 (50%), Gaps = 11/264 (4%)

Query: 59  IDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ++ +   +   K   E R+PAS+TK+MTL +IF+ L SK++ L+  + VS+ AA+   S+
Sbjct: 1   MEASTGAVVYEKNSHEARHPASVTKIMTLLLIFDALSSKQISLDDTVTVSEYAASMGGSQ 60

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           ++L+     T E  I  +   SAND   A  E ++GSE +F  +M+ +AK +GM +T + 
Sbjct: 61  VFLEPGETQTVETMIKCISVASANDACVAMAEHVAGSESEFVRMMNERAKGLGMNDTNFV 120

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--------ITNHNK 229
           N  GL     +T+A D A++   L   +P+ + Y +I      +          +TN NK
Sbjct: 121 NCCGLDADGHMTSANDIALMSRELITKYPKIHDYCTIWMENITHTTAKGSSEFGLTNTNK 180

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           L+       G+KTG+T  + + I  + +  D  ++AV+MG P  + R   A  L+     
Sbjct: 181 LIKHYQYATGLKTGFTNTAMYCISATAKKDDMELIAVIMGAPDIKSRSADATTLLNYGFG 240

Query: 290 KKTLKHQQTHRKDNLSSTSLKKSL 313
           K  +       +D L    ++K L
Sbjct: 241 KCRIYCDS--HEDKLDDLPVEKGL 262


>gi|253578836|ref|ZP_04856107.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849779|gb|EES77738.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 399

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 84/332 (25%), Positives = 146/332 (43%), Gaps = 28/332 (8%)

Query: 25  QRNIQLMGKILFLSIIMIS----------------MASELHAKPKYSSIVIDVNKNQMTG 68
           ++ I ++  IL +   + +                 A         S I+++     +  
Sbjct: 3   KKWISIICAILIMVCTITTPVYAAGIFLPEESNTRQAESTDLIEAPSGILMEAQTGTVVY 62

Query: 69  FKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
            K  D  R PAS+TK+MTL +IF+ L    L ++  +  S  A +   S+++L+E    T
Sbjct: 63  QKDADTRRSPASITKIMTLILIFDALDKGSLKMDDTVTTSAHAKSMGGSQVFLEEGEIQT 122

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KN 186
            E  I  ++  S ND S A  E I GSE++F   M+ +A+ +GM+NT +++  GL +  +
Sbjct: 123 VETLIKCIVIASGNDASVAMAEHICGSEQEFVRHMNERAEGLGMKNTHFEDCCGLTESPD 182

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRY--------RNRIITNHNKLLNKMHNID 238
             TTARD AI+   L   +P+  +Y SI             +   +TN NKL+       
Sbjct: 183 HYTTARDIAIMSRELITKYPKILEYSSIWMENITHVTRQGTKEFGLTNTNKLIRSYEGCV 242

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
           G+KTG T  + + +    +  D  ++AVVM  P  + R + A  ++     K +L   + 
Sbjct: 243 GLKTGSTSIAKYCLSAVAKRNDITLIAVVMAAPDYKVRFKDAASMLNYGFSKCSLYIDK- 301

Query: 299 HRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
            + + L    ++             QF  +D 
Sbjct: 302 -KMEALPEIPVRNGKKKTVSLVYEEQFHYLDT 332


>gi|58038510|ref|YP_190474.1| D-alanyl-D-alanine carboxypeptidase [Gluconobacter oxydans 621H]
 gi|58000924|gb|AAW59818.1| D-alanyl-D-alanine carboxypeptidase [Gluconobacter oxydans 621H]
          Length = 424

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 80/242 (33%), Positives = 126/242 (52%), Gaps = 5/242 (2%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + V+D +   +   K  DE   P+SLTKMMT YI+F  L + ++ L   +PVS+ A    
Sbjct: 82  AYVVDYDTGAVLLDKASDERMAPSSLTKMMTAYIVFGMLATGRIRLEQSLPVSEKAWRTQ 141

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            SK+++           I  ++ +S ND      E I+GSE++F  +M+ +A K+GM N+
Sbjct: 142 GSKMFVPLGQSVLVSDLIQGMLIQSGNDACIVLAEGIAGSEERFVAMMNEEAPKLGMMNS 201

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            + N +GL       TARD A +   L ++FPQYY YF   +F Y +    N N L++K 
Sbjct: 202 HFVNVTGLPADGHYMTARDVATVASHLIRDFPQYYHYFGELEFTYNHIRQGNRNVLVDKG 261

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF---LEKK 291
              DG+KTG+T   GF +  S +   + ++ V+ G  +S ER  +   L++      E  
Sbjct: 262 L-ADGLKTGHTEAGGFGLCASSQRNGNRVIVVINGSSSSNERAHEGERLMSWAFANFENA 320

Query: 292 TL 293
           TL
Sbjct: 321 TL 322


>gi|321311824|ref|YP_004204111.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5]
 gi|320018098|gb|ADV93084.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5]
          Length = 389

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 88/334 (26%), Positives = 165/334 (49%), Gaps = 31/334 (9%)

Query: 28  IQLMGKILFLSIIMISMASELHAK-----------PKYSSIVIDVNKNQMTGFKQ-DEPR 75
           ++ +   L + I++++ A    AK              S+++I+ +  ++   K  +E  
Sbjct: 1   MKRLLSTLLIGIMLLTFAPSAFAKQDGKRTSELAHEAKSAVLIERDTGKVLYNKNSNERL 60

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
            PAS+TK+MT+ +I E L   K+ ++ ++  S+ AA+   S+++L+     T ++ +  +
Sbjct: 61  APASMTKIMTMLLIMEALDKGKIKMSDKVRTSEHAASMGGSQIFLEPGEEMTVKEMLKGI 120

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
              S ND S A  EFISGSE++F   M+ KAK++G++NT +KN +GL ++   ++A D A
Sbjct: 121 AIASGNDASVAMAEFISGSEEEFVQKMNKKAKELGLKNTSFKNPTGLTEEGHYSSAYDMA 180

Query: 196 ILGILLRKNFPQYYKYFSI-----RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           I+   L K +    K+        R+   +   + N N+L+     +DG+KTGYT  + +
Sbjct: 181 IMAKELLK-YESITKFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGYTGEAKY 239

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK----TLKHQQTHRKDNLS- 305
            +  S +  +   +AVV G  T +ER+ +  +++     +       K  QT  K  +  
Sbjct: 240 CLTASAKKGNMRAIAVVFGASTPKERNAQVTKMLDFAFSQYETHPLYKRNQTVAKVKVKK 299

Query: 306 --------STSLKKSLMIKKLKRTYSQFKKIDAK 331
                   +TS   S++ KK +      K+I  K
Sbjct: 300 GKQKFIELTTSEPISILTKKGEDMNDVKKEIKMK 333


>gi|297544591|ref|YP_003676893.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842366|gb|ADH60882.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 381

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 93/315 (29%), Positives = 160/315 (50%), Gaps = 10/315 (3%)

Query: 30  LMGKILFLSIIM--ISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTL 86
           L+  I+ +S I+     A  L+ K K S+I+++ N  Q+   K    P  PAS+TK+MTL
Sbjct: 9   LVSMIIAISFILDVTVYADTLNLKAK-SAILMEANTGQILYEKDSHKPLPPASVTKVMTL 67

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            +  E + S K+ +  ++  SK A     +++YL+     T +  + A+   SAND S A
Sbjct: 68  LLAIEAIDSGKIKITDKVVTSKHAFDMGGTQIYLEIGEEMTVDDLMKAIAMNSANDASVA 127

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E+I+G+E+ F  +M+ +AK++G +NT +KNA+GL D+  +T+  D A++   L K   
Sbjct: 128 LAEYIAGTEENFVEIMNKRAKELGAKNTTFKNATGLPDEGHLTSVYDIAMISRELVK-HE 186

Query: 207 QYYKYFSIR--KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
             +KY + +    R     + N NKLL +   +DGIKTG T  + + +  + +  D  ++
Sbjct: 187 SIFKYLTNKLDSLRNGKFSLINTNKLLWRYKGVDGIKTGSTSEALYCMAATAKRADTRLI 246

Query: 265 AVVMGMPTSQERDQKALELITSFL-EKKTLK-HQQTHRKDNLSSTSLKKSLMIKKL-KRT 321
           AVV G P S+ R  +  +L+       +++K   +     N+     KK  +        
Sbjct: 247 AVVFGAPDSETRFSETAKLLDYGFANYESVKIASKGQSFGNVKVLKGKKETVSGVCHDDE 306

Query: 322 YSQFKKIDAKAHSTQ 336
           Y   KK + K   T+
Sbjct: 307 YILIKKGEGKNIKTE 321


>gi|296116334|ref|ZP_06834950.1| D-alanyl-D-alanine carboxypeptidase [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977153|gb|EFG83915.1| D-alanyl-D-alanine carboxypeptidase [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 435

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 125/252 (49%), Gaps = 5/252 (1%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P   + +ID     +   K  DE   P+SLTKMMT Y++F  L++ +L L+  + VS+ A
Sbjct: 88  PARWACIIDYTTGAVLLEKAADERMPPSSLTKMMTAYVVFGMLRAGRLKLDQTLTVSEKA 147

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                SK+++  +        I  ++ +S ND      E ++GSE +F  LM+ +A ++G
Sbjct: 148 WRMQGSKMFVPLQGAVAVSDLIQGMVIQSGNDACIVLAEGVAGSEDQFVSLMNAQAVQLG 207

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M NT + NA+G        +ARD   + + L  +FP+YY +F+ + FRY      N N L
Sbjct: 208 MTNTHFMNATGWPADGHYMSARDVTTIAMHLIHDFPEYYHFFAEKGFRYNRISQENRNAL 267

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF--- 287
           + K    DG+KTG+T   GF +  S     + IV  + G+P+S  R  +   L+      
Sbjct: 268 VVKGI-ADGLKTGHTDAGGFGLCASSERNGNRIVMAINGLPSSNARAFEGERLLEWGFVN 326

Query: 288 LEKKTLKHQQTH 299
            E  TL H    
Sbjct: 327 FENATLVHNGAV 338


>gi|319935945|ref|ZP_08010369.1| D-alanyl-D-alanine carboxypeptidase [Coprobacillus sp. 29_1]
 gi|319809059|gb|EFW05555.1| D-alanyl-D-alanine carboxypeptidase [Coprobacillus sp. 29_1]
          Length = 381

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 83/321 (25%), Positives = 147/321 (45%), Gaps = 12/321 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGF-KQDEPRYPASLT 81
           I++ +  +  +L      +  A +L   P   SS++++ +  Q+     + +  +PAS T
Sbjct: 2   IKKILICLFVMLLCMFPKVVYAEDLKLAPNAASSVLMEASTKQVLYSSHETDKLFPASTT 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT+ ++FE +    L  +  +  S  AA+   S++YL+E    +       +   SAN
Sbjct: 62  KIMTMILMFEAINKGTLKWDDVLTCSAYAASMGGSQIYLEEGEQMSVSDLFKGISIASAN 121

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D     GE I+G+   F  +M+ KAK++ + NT + N +GLHD N  T A D  ++   L
Sbjct: 122 DACVMVGERIAGTNDGFVKMMNEKAKELNLTNTHFMNPTGLHDDNHYTCALDLGLMASYL 181

Query: 202 RKN-----FPQYYKYFS-IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
            +      F     Y S IR+   +   + N NKLL      DG+KTGYT+ +G+ IV++
Sbjct: 182 IQIGGDRLFATTSLYDSYIRENSAQKFWLVNTNKLLKSYEGADGLKTGYTKEAGYCIVST 241

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK----TLKHQQTHRKDNLSSTSLKK 311
            +     ++AVVM     + R+Q+  +L+             K      K  + +   K 
Sbjct: 242 AKRNGLRLIAVVMKESEPKVRNQEVSQLLDYGFSLYENVILFKKDDIIEKIPIENARQKS 301

Query: 312 SLMIKKLKRTYSQFKKIDAKA 332
             ++ K    Y + K    + 
Sbjct: 302 VEVVCKEDVVYVKDKSAQDEV 322


>gi|143439|gb|AAA22704.1| DD-carboxypeptidase [Bacillus subtilis]
          Length = 389

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 88/334 (26%), Positives = 165/334 (49%), Gaps = 31/334 (9%)

Query: 28  IQLMGKILFLSIIMISMASELHAK-----------PKYSSIVIDVNKNQMTGFKQ-DEPR 75
           ++ +   L + I++++ A    AK              S+++I+ +  ++   K  +E  
Sbjct: 1   MKRLLSTLLIGIMLLTFAPSAFAKQDGKRTSELAHEAKSAVLIERDTGKVLYNKNSNERL 60

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
            PAS+TK+MT+ +I E L   K+ ++ ++  S+ AA+   S+++L+     T ++ +  +
Sbjct: 61  APASMTKIMTMLLIMEALDKGKIKMSDKVRTSEHAASMGGSQIFLEPGEEMTVKEMLKGI 120

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
              S ND S A  EFISGSE++F   M+ KAK++G++NT +KN +GL ++   ++A D A
Sbjct: 121 AIASGNDASVAMAEFISGSEEEFVKKMNKKAKELGLKNTSFKNPTGLTEEGHYSSAYDMA 180

Query: 196 ILGILLRKNFPQYYKYFSI-----RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           I+   L K +    K+        R+   +   + N N+L+     +DG+KTGYT  + +
Sbjct: 181 IMAKELLK-YESITKFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGYTGEAKY 239

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK----TLKHQQTHRKDNLS- 305
            +  S +  +   +AVV G  T +ER+ +  +++     +       K  QT  K  +  
Sbjct: 240 CLTASAKKGNMRAIAVVFGASTPKERNAQVTKMLDFAFSQYETHPLYKRNQTVAKVKVKK 299

Query: 306 --------STSLKKSLMIKKLKRTYSQFKKIDAK 331
                   +TS   S++ KK +      K+I  K
Sbjct: 300 GKQKFIELTTSEPISILTKKGEDMNDVKKEIKMK 333


>gi|330994628|ref|ZP_08318551.1| D-alanyl-D-alanine carboxypeptidase dacC [Gluconacetobacter sp.
           SXCC-1]
 gi|329758269|gb|EGG74790.1| D-alanyl-D-alanine carboxypeptidase dacC [Gluconacetobacter sp.
           SXCC-1]
          Length = 428

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 81/248 (32%), Positives = 124/248 (50%), Gaps = 5/248 (2%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + ++D     +   K  DE   P+SLTKMMT YI+F  L++ +L L   +PVS+ A    
Sbjct: 85  ACIVDYTTGAVLLEKAADERMPPSSLTKMMTAYIVFGMLRAGRLTLEQTLPVSEKAWRMQ 144

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            SK+++           I  ++ +S ND      E I+GSE++F  LM+ KA ++GM N+
Sbjct: 145 GSKMFVPLNGTVAVSDLIQGMVIQSGNDACIVLAEGIAGSEEQFVGLMNAKAAELGMSNS 204

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            + NA+G        +ARD A + + L  +FP YY +FS + FRY      N N L+ + 
Sbjct: 205 HFLNATGWPMDGHYMSARDVATIAMHLIHDFPDYYHFFSEKSFRYNKISQENRNVLVVR- 263

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS---FLEKK 291
              DG+KTG+T   GF +  S     + +V  + G+P+S  R Q+   L        E  
Sbjct: 264 GVADGLKTGHTDAGGFGLCASAERGGNRVVMAINGLPSSNARAQEGERLFEWSFVNFENA 323

Query: 292 TLKHQQTH 299
           TL H    
Sbjct: 324 TLVHNGAV 331


>gi|319408389|emb|CBI82044.1| penicillin-binding protein [Bartonella schoenbuchensis R1]
          Length = 449

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 117/271 (43%), Positives = 165/271 (60%), Gaps = 1/271 (0%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMM 84
           + I     +L +S        +     KY++IVID +  +          RYPASLTKMM
Sbjct: 13  KGIVTTFIVLTISYSSAKATPKEAYPDKYAAIVIDAHTGKTLFQANATLKRYPASLTKMM 72

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TLY++FE ++ +++  NT IP+S  AA + P+K+  K     + E+   ALIT+SANDV+
Sbjct: 73  TLYMLFEAMEVRRVTPNTPIPISAYAAARPPTKIGFKAGQTISVEEAAKALITKSANDVA 132

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
           TA GE++ GSE KFA +M+ KA+K+GM NT + NASGL D    +TA+D A L + LRK+
Sbjct: 133 TAVGEYLGGSEPKFARMMTVKARKLGMTNTRFANASGLPDARNYSTAKDMATLALALRKH 192

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           FPQ YK F    F +R + I NHNKL+  +  +DGIKTGYT+ SG N+ TS+  +   IV
Sbjct: 193 FPQQYKLFKTTSFSFRGKTINNHNKLVKTIKGVDGIKTGYTQMSGSNLATSMHIEGRSIV 252

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKTLKH 295
           AVVMG  +S ERD     L+  +L + + K 
Sbjct: 253 AVVMGGKSSTERDIHMTNLLNRYLPRASRKK 283


>gi|85716353|ref|ZP_01047326.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
           sp. Nb-311A]
 gi|85696869|gb|EAQ34754.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
           sp. Nb-311A]
          Length = 582

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 111/274 (40%), Positives = 167/274 (60%), Gaps = 1/274 (0%)

Query: 51  KPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
            P ++SIV+D N          D PR+PASLTKMMTLY++FE L + ++ L++++ VS  
Sbjct: 51  NPPFASIVVDANSGATLSSVNPDSPRHPASLTKMMTLYMLFERLDAGRISLDSEMRVSAH 110

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           AA Q+P+KL L++      E  I  L+T+SAND +    E I+G E  FA +M+ KA+ +
Sbjct: 111 AAAQDPTKLGLRQGQTIRVEDAIKGLVTKSANDAAVVIAEAIAGDEDDFARMMTRKARAL 170

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM  T+Y+NASGL D +QITTARDQA LG  L+  FP+YY+YF+   F +R R +  HN+
Sbjct: 171 GMTRTVYRNASGLPDDDQITTARDQATLGRALQDRFPRYYRYFATTSFTFRGRTVRGHNR 230

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           L+  +  +DGIKTGY R+SGFN+VT++R  +  +V VV+G  +   RD    +L+   L+
Sbjct: 231 LIGSVDGVDGIKTGYIRSSGFNLVTNIRRGNRHLVGVVLGGRSGSSRDATMRKLLAENLD 290

Query: 290 KKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYS 323
           K   +       +  ++ +  K+   +   R  S
Sbjct: 291 KAATRRTVAAIAERSTAEANAKAAEDQARSRPNS 324


>gi|190890661|ref|YP_001977203.1| D-alanyl-D-alanine carboxypeptidase [Rhizobium etli CIAT 652]
 gi|190695940|gb|ACE90025.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CIAT
           652]
          Length = 432

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 100/264 (37%), Positives = 165/264 (62%), Gaps = 2/264 (0%)

Query: 31  MGKILFLSI-IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYI 88
           M K+L   + + +++++ L A    +S+++D    ++   +  +   +PASLTKMMTLY+
Sbjct: 1   MRKLLAAVLTVTLAVSAPLAALAGSASLILDARTGKVLAAENADTLNHPASLTKMMTLYL 60

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            FE L+  K+  +T I +SK AA + P+KL +K     T  + +  +I +SAND + A  
Sbjct: 61  TFEALKRGKIDWDTPIRMSKYAAARPPTKLGVKAGGTITVREAVYGMIVKSANDAAAAMA 120

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E + GSE  FA +M+ KA+++GM  T++ NASGL + +Q+TTARD + LG+ L KN+P  
Sbjct: 121 ETLGGSESGFARMMTAKARQLGMSRTVFVNASGLPNPSQVTTARDMSTLGVALMKNYPNE 180

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           Y+ FS+  F +R + +  HN L+ +   +DGIKTGYT  SGFN+V+++R  +  +V VV+
Sbjct: 181 YRLFSMASFNFRGKTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVVGVVL 240

Query: 269 GMPTSQERDQKALELITSFLEKKT 292
           G  T++ RD K   L+  +L + +
Sbjct: 241 GGRTARSRDAKMAGLLDRYLGRAS 264


>gi|260587845|ref|ZP_05853758.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
           20583]
 gi|331083847|ref|ZP_08332956.1| hypothetical protein HMPREF0992_01880 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542110|gb|EEX22679.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
           20583]
 gi|330403272|gb|EGG82832.1| hypothetical protein HMPREF0992_01880 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 393

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 83/329 (25%), Positives = 161/329 (48%), Gaps = 17/329 (5%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYP 77
           IY      ++G +LF S+ +  +  +   +   ++   ++++ +  ++   K  D    P
Sbjct: 2   IYRATAKIVVGILLFCSLFLTPLTVKAENEELITAPHGVLMEASTGKIIYEKDMDTRVKP 61

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MTL +IF+ L+   LH+  ++  S  A +   S+++L+E    T E  I  ++ 
Sbjct: 62  ASITKIMTLILIFDELEKGNLHMEDEVVTSAYAKSMGGSQVFLEEGEKQTVETLIKCIVI 121

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAI 196
            S ND S A  E I+GSE +F   M+ +AK +GM+NT +++  GL +  N  T+A D AI
Sbjct: 122 ASGNDASAAMAEHIAGSETEFVKRMNERAKGLGMENTNFEDCCGLTESDNHYTSAHDVAI 181

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRI--------ITNHNKLLNKMHNIDGIKTGYTRNS 248
           +   L   +P+  +Y S+      +          +TN NKL+       G+KTG T  +
Sbjct: 182 MSRELITRYPKILEYSSVWMENITHVTQKGNSEFGLTNTNKLIRSYDGCVGLKTGSTSVA 241

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
            + +    + +   +++VVM  P  + R + A  ++        L   +  +K+ L    
Sbjct: 242 KYCVSAVAQREGITLISVVMTAPDYKVRFKDAAAMLNLGFGSCKLYVDE--QKEKLPQIP 299

Query: 309 LKKSLMIKKLKRTYS-QFKKIDAKAHSTQ 336
           ++  + ++K+   Y  +F+ +D +  S +
Sbjct: 300 VEGGV-LEKVPCAYEKEFRYLDTEGASFE 327


>gi|254472440|ref|ZP_05085840.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Pseudovibrio
           sp. JE062]
 gi|211958723|gb|EEA93923.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Pseudovibrio
           sp. JE062]
          Length = 447

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 153/283 (54%), Gaps = 4/283 (1%)

Query: 33  KILFLSIIMISMASELH-AKPKYSS-IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYII 89
           K+ FL++  +++ S L  A+   ++ +++D +  Q+       +  YPASLTKMMT Y+ 
Sbjct: 11  KVRFLAVFAVALGSLLSTARADIAAWLLMDADNGQVLEHNAAFDRWYPASLTKMMTAYVA 70

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           F+++    + ++  + VS+ A  Q PSK+  K  T  T +  +  ++ +SAND++ A  E
Sbjct: 71  FQHISRGDMAMSDMVMVSQNALNQPPSKMGFKVGTTITLDNALKMILVKSANDIAVAVAE 130

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            + G+E+ F  +M+  A+++GM +T + N  GL D  Q+TTARD AIL   L   FPQY 
Sbjct: 131 RVGGTEENFITMMNANARRMGMLHTNFVNPHGLPDNRQVTTARDMAILARELWNKFPQYR 190

Query: 210 KYFSIRKFRYRNRIITNHNK-LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            Y S    R+  R   + N+  L +    +G+KTGY  NSGFN+ TS       ++A+V+
Sbjct: 191 SYMSHPGIRFGRRTFRSGNRDFLLRTAGANGMKTGYICNSGFNVATSATRNGRTVIAIVL 250

Query: 269 GMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
           G  +S ER   A +LI S  +K T  +    R     +    +
Sbjct: 251 GAASSLERSAFAKKLIDSGFKKTTGTNIGVFRGSGKQAPPKDR 293


>gi|71274450|ref|ZP_00650738.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Dixon]
 gi|71900446|ref|ZP_00682578.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Ann-1]
 gi|71164182|gb|EAO13896.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Dixon]
 gi|71729811|gb|EAO31910.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Ann-1]
          Length = 347

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 80/286 (27%), Positives = 144/286 (50%), Gaps = 17/286 (5%)

Query: 59  IDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-- 115
           +D    Q+   +       PASLTK+MT Y+I   +++ K+H + Q+ +++ A  +    
Sbjct: 1   MDFASGQVLAGENIHTHLAPASLTKVMTSYVIAAEIKNGKVHRDDQVMMTENAWRKGGAG 60

Query: 116 ---SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S            E     +I +S ND + A  E ++GSE+ FA LM++ A++IGM+
Sbjct: 61  TDGSYSGFPVNKTARLEDMEQGMIVQSGNDAAIALAEHVAGSEEAFASLMNSYAQRIGMK 120

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           N+ + +A+GL  +   ++A D A+LG  L ++ P+ Y Y  +++        +N N LL 
Sbjct: 121 NSHFVDATGLSAEGHYSSAYDMALLGRALIRDSPETYAYNKVKELVVNGIKQSNRNLLLW 180

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS---FLE 289
           +  ++DGIKTG+T  +G+ I+ S +  D  I+ VVMG  + ++R + +L L+     F E
Sbjct: 181 RDPSVDGIKTGHTSEAGYCIINSAKRGDQRILTVVMGDVSEKKRAEDSLALLNWGFRFFE 240

Query: 290 KKTL--------KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
             TL        KH+    + +     + + L +   +  Y+  K 
Sbjct: 241 THTLYEPGKVVIKHKIWKGQVSEVQLGVTRPLFVTVQRGRYNDLKP 286


>gi|197303542|ref|ZP_03168581.1| hypothetical protein RUMLAC_02264 [Ruminococcus lactaris ATCC
           29176]
 gi|197297540|gb|EDY32101.1| hypothetical protein RUMLAC_02264 [Ruminococcus lactaris ATCC
           29176]
          Length = 402

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 144/295 (48%), Gaps = 14/295 (4%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A E+ A    S+I++++    +   K  D  R PAS+TK+MT+ +IF+ L   K+ L  +
Sbjct: 44  AVEVTAP---SAILMEMTTGTVLYEKDADTARPPASVTKVMTMLLIFDALAEGKIQLEDE 100

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           +  S+ A++   S+++L+     T E  +  +   SAND   A  E+ISG+E++F   M+
Sbjct: 101 VTTSEYASSMGGSQVFLETGEKQTVETLLKCISVASANDACVAMAEYISGNEEEFVRQMN 160

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI 223
            +A+ +GM++T + N +GL  +   T+ARD A++   L   +P+ + Y +I      +  
Sbjct: 161 LRAEGLGMKHTHFVNCNGLDAEGHETSARDIALMSRELLLKYPEIHNYCTIWMENITHTT 220

Query: 224 --------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
                   +TN NKL+ +     G+KTG T  + F +  +       ++AV+MG   S+ 
Sbjct: 221 SKGSSEFGLTNTNKLIRQYEYATGLKTGSTGKAKFCVSATAEKNGVSLIAVIMGAEDSKA 280

Query: 276 RDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
           R + A+ L+     K  +   +     +L   S+   +          +F  +D 
Sbjct: 281 RFKDAVTLLNYGFGKCQMYTDEN--MPSLDPISVTGGIQESISLEYEKKFTYLDT 333


>gi|16079405|ref|NP_390229.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310266|ref|ZP_03592113.1| penicilin binding protein (putative D-alanyl-D-alanine
           carboxypeptidase) [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221314589|ref|ZP_03596394.1| penicilin binding protein (putative D-alanyl-D-alanine
           carboxypeptidase) [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221319512|ref|ZP_03600806.1| penicilin binding protein (putative D-alanyl-D-alanine
           carboxypeptidase) [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221323788|ref|ZP_03605082.1| penicilin binding protein (putative D-alanyl-D-alanine
           carboxypeptidase) [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|34395963|sp|P38422|DACF_BACSU RecName: Full=D-alanyl-D-alanine carboxypeptidase dacF;
           Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
           Full=Penicillin-binding protein dacF; Short=PBP; Flags:
           Precursor
 gi|1303997|dbj|BAA12652.1| DacF [Bacillus subtilis]
 gi|2634783|emb|CAB14280.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 389

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 88/334 (26%), Positives = 165/334 (49%), Gaps = 31/334 (9%)

Query: 28  IQLMGKILFLSIIMISMASELHAK-----------PKYSSIVIDVNKNQMTGFKQ-DEPR 75
           ++ +   L + I++++ A    AK              S+++I+ +  ++   K  +E  
Sbjct: 1   MKRLLSTLLIGIMLLTFAPSAFAKQDGKRTSELAHEAKSAVLIERDTGKVLYNKNSNERL 60

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
            PAS+TK+MT+ +I E L   K+ ++ ++  S+ AA+   S+++L+     T ++ +  +
Sbjct: 61  APASMTKIMTMLLIMEALDKGKIKMSDKVRTSEHAASMGGSQIFLEPGEEMTVKEMLKGI 120

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
              S ND S A  EFISGSE++F   M+ KAK++G++NT +KN +GL ++   ++A D A
Sbjct: 121 AIASGNDASVAMAEFISGSEEEFVKKMNKKAKELGLKNTSFKNPTGLTEEGHYSSAYDMA 180

Query: 196 ILGILLRKNFPQYYKYFSI-----RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           I+   L K +    K+        R+   +   + N N+L+     +DG+KTGYT  + +
Sbjct: 181 IMAKELLK-YESITKFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGYTGEAKY 239

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK----TLKHQQTHRKDNLS- 305
            +  S +  +   +AVV G  T +ER+ +  +++     +       K  QT  K  +  
Sbjct: 240 CLTASAKKGNMRAIAVVFGASTPKERNAQVTKMLDFAFSQYETHPLYKRNQTVAKVKVKK 299

Query: 306 --------STSLKKSLMIKKLKRTYSQFKKIDAK 331
                   +TS   S++ KK +      K+I  K
Sbjct: 300 GKQKFIELTTSEPISILTKKGEDMNDVKKEIKMK 333


>gi|296332281|ref|ZP_06874743.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674982|ref|YP_003866654.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150595|gb|EFG91482.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413226|gb|ADM38345.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 389

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 74/281 (26%), Positives = 147/281 (52%), Gaps = 18/281 (6%)

Query: 28  IQLMGKILFLSIIMISMASELHAK-----------PKYSSIVIDVNKNQMTGFKQ-DEPR 75
           ++ +   L + I++++ A    AK              S+++I+ +  ++   K  +E  
Sbjct: 1   MKRLLSTLLIGIMLLTFAPSAFAKQDGKGTSELAHEAKSAVLIERDTGKVLYNKNSNERL 60

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
            PAS+TK+MT+ +I E L   K+ ++ ++  S+ AA+   S+++L+     T ++ +  +
Sbjct: 61  APASMTKIMTMLLIMEALDEGKIKMSDKVRTSEHAASMGGSQIFLEPGEEMTVKEMLKGI 120

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
              S ND S A  EFISGSE++F   M+ KA+++G++NT +KN +GL ++   ++A D A
Sbjct: 121 AIASGNDASVAMAEFISGSEEEFVKKMNKKARELGLKNTSFKNPTGLTEEGHFSSAYDMA 180

Query: 196 ILGILLRKNFPQYYKYFSI-----RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           I+   L K +    K+        R+   +   + N N+L+     +DG+KTGYT  + +
Sbjct: 181 IMAKELLK-YESITKFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGYTGEAKY 239

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
            +  S +  +   +AVV G  T ++R+ +  +++     + 
Sbjct: 240 CLTASAKKGNMRAIAVVFGASTPKDRNAQVTKMLDFAFSQY 280


>gi|291484778|dbj|BAI85853.1| penicillin-binding protein [Bacillus subtilis subsp. natto BEST195]
          Length = 389

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 88/334 (26%), Positives = 165/334 (49%), Gaps = 31/334 (9%)

Query: 28  IQLMGKILFLSIIMISMASELHAK-----------PKYSSIVIDVNKNQMTGFKQ-DEPR 75
           ++ +   L + I++++ A    AK              S+++I+ +  ++   K  +E  
Sbjct: 1   MKRLLSTLLIGIMLLTFAPSAFAKQDGKRTSELAHEAKSAVLIERDTGKVLYNKNSNERL 60

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
            PAS+TK+MT+ +I E L   K+ ++ ++  S+ AA+   S+++L+     T ++ +  +
Sbjct: 61  APASMTKIMTMLLIMEALDKGKIKMSDKVRTSEHAASMGGSQIFLEPGEEMTVKEMLKGI 120

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
              S ND S A  EFISGSE++F   M+ KAK++G++NT +KN +GL ++   ++A D A
Sbjct: 121 AIASGNDASVAMAEFISGSEEEFVKKMNKKAKELGLKNTSFKNPTGLTEEGHYSSAYDMA 180

Query: 196 ILGILLRKNFPQYYKYFSI-----RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           I+   L K +    K+        R+   +   + N N+L+     +DG+KTGYT  + +
Sbjct: 181 IMAKELLK-YESITKFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGYTGEAKY 239

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK----TLKHQQTHRKDNLS- 305
            +  S +  +   +AVV G  T +ER+ +  +++     +       K  QT  K  +  
Sbjct: 240 CLTASAKKGNMRAIAVVFGASTPKERNAQVTKMLDFAFSQYETHPLYKRNQTVAKVKVKK 299

Query: 306 --------STSLKKSLMIKKLKRTYSQFKKIDAK 331
                   +TS   S++ KK +      K+I  K
Sbjct: 300 GKQKLIELTTSEPISILTKKGEDMNDVKKEIKMK 333


>gi|302392458|ref|YP_003828278.1| serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum
           DSM 5501]
 gi|302204535|gb|ADL13213.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum
           DSM 5501]
          Length = 397

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 79/274 (28%), Positives = 132/274 (48%), Gaps = 12/274 (4%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQD-EPRYPASLT 81
           +I L+  +L LS  +   A EL          S+++++    ++   K   E   PAS+T
Sbjct: 7   SIILLVFLLCLSFSLTLSAEELPDPEFDLEAKSAVLMEAKSGKVIYEKNAHEELPPASIT 66

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K MTL +  E +   K +L+  +  S+ AA    S+++L+       E+ I A+   SAN
Sbjct: 67  KTMTLLLTMEAIDEGKANLDEAVTTSEYAAGMGGSQIWLEPGEEMKLEEMIKAIAIVSAN 126

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-----QITTARDQAI 196
           D   A  E + G+E+ F   M+ KA ++G+ +T + N +GL  ++       T+A D  +
Sbjct: 127 DACVAVAEHLYGTEEVFVNAMNEKADELGLDDTHFVNTNGLPVEDSDKRGNYTSAHDVGV 186

Query: 197 LGILLRKNFPQYYKYFSIR--KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
           +   L   +PQ   Y  I     R  +  + N N L+      DG+KTG+T  +GF +V 
Sbjct: 187 MSRELVTKYPQVLDYTKIWIDHLRDGDSFLRNTNNLVRFYKGADGLKTGHTSQAGFGVVA 246

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +   K    +AVVM   TS  R ++A EL++   
Sbjct: 247 TAERKGLRFIAVVMKEETSDTRFKEAGELLSYGF 280


>gi|126733463|ref|ZP_01749210.1| Probable penicillin-binding protein [Roseobacter sp. CCS2]
 gi|126716329|gb|EBA13193.1| Probable penicillin-binding protein [Roseobacter sp. CCS2]
          Length = 464

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 95/267 (35%), Positives = 150/267 (56%), Gaps = 5/267 (1%)

Query: 48  LHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
             A P Y+++V+D    ++   +  D   +PASLTKMMTLY+ F+ ++  ++ L+T + +
Sbjct: 3   ATAAP-YAAMVMDARTGEVLHSRNADTQLHPASLTKMMTLYVAFQAIERGEITLDTPVRI 61

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
           S+ AA++ PSKL L+          + A   +SAND +TA GE ISGSE  FA  M+  A
Sbjct: 62  SRLAASEPPSKLGLRSGQTIRLRFLLRAAAVKSANDAATAIGEAISGSEDAFATRMNRTA 121

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
           + +GM+NT ++NA GL     ++TARD ++LG  +  +FPQYY  FS R        + +
Sbjct: 122 RAMGMRNTNFRNAHGLTQSGHLSTARDMSVLGRHVIYDFPQYYNLFSRRSADAGVARVRH 181

Query: 227 HN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N + L+     DGIKTGYTR +GFN+V S +   + ++A V G  ++  R+ +  EL+ 
Sbjct: 182 TNRRWLDSYAGGDGIKTGYTRAAGFNLVASAQRGQERVIATVFGGSSTSARNARITELMD 241

Query: 286 SFLEKKTLKHQQTHRKDNLSSTSLKKS 312
               +     + T R+ N  +  L  S
Sbjct: 242 MGFNRAP--SRATIRRPNPPAAMLTSS 266


>gi|301630478|ref|XP_002944344.1| PREDICTED: d-alanyl-D-alanine carboxypeptidase dacC-like, partial
           [Xenopus (Silurana) tropicalis]
          Length = 294

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 78/258 (30%), Positives = 137/258 (53%), Gaps = 12/258 (4%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +      E+ A+   + +++DV   Q+   K  D P   ASLTK+MT Y++F+ L++KK+
Sbjct: 26  LATPQPPEVAAR---NYLLVDVTAGQVLAAKDIDAPVEQASLTKLMTGYLVFDALRAKKI 82

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            L  ++PVS+ A     S++++  K     +  +  +I +S ND + A  E + GS + F
Sbjct: 83  ALAQKLPVSERAWKMPGSRMFIDPKMQIPVDDLLKGMIVQSGNDATVALAEGVGGSVENF 142

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             LM+ +A+ +GM  T YKN  GL +    TTA+D A+L   L ++FP+Y  Y++ R + 
Sbjct: 143 VHLMNEQARALGMTGTSYKNPEGLTEPGHSTTAKDLALLVQRLMQDFPEYMHYYATRHYA 202

Query: 219 YRNRII---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-----KDDPIVAVVMGM 270
           Y         N N LL +   +DG+KTGYT  +G+ +V + R          ++++V+G 
Sbjct: 203 YPGTPKSNGNNRNTLLFRDPTVDGLKTGYTAAAGYCLVATSRREFPQLGQRRLLSIVLGT 262

Query: 271 PTSQERDQKALELITSFL 288
            +   R  ++ +L+    
Sbjct: 263 ASENARSNESQKLLNWGY 280


>gi|255261606|ref|ZP_05340948.1| D-alanyl-D-alanine carboxypeptidase [Thalassiobium sp. R2A62]
 gi|255103941|gb|EET46615.1| D-alanyl-D-alanine carboxypeptidase [Thalassiobium sp. R2A62]
          Length = 389

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 136/271 (50%), Gaps = 6/271 (2%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
           R + +   I  +     +  ++  A    ++IVID     +   K  DE   PAS++K+M
Sbjct: 4   RLVSVFATIAVVVFGASAAIAQNFATQATAAIVIDQTTGTLLMEKNADEALPPASMSKLM 63

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TLY+ FE +   +L L+ ++PVS+ A     S ++LK       E  I  +I  S ND  
Sbjct: 64  TLYMAFEAVSDGRLRLDEELPVSQHAMNYGGSTMFLKRGERVKVEDLIRGIIVLSGNDAC 123

Query: 145 TAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
               E +S  G+E  F  +M+ +A+++GM N+ + N++G        + RD +IL   L 
Sbjct: 124 AVIAEALSTDGTEAGFGRMMTARARELGMMNSTFTNSNGWPQAGHRMSMRDLSILADRLI 183

Query: 203 KNFPQYYKYFSIRKFRYRNRIIT---NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            ++P YY  FS ++F +  +      N N LL      DG+KTG+T  +G+ +V S +  
Sbjct: 184 TDYPTYYPLFSQKEFMFDEKESKNRLNRNPLLGLGIGADGLKTGHTNEAGYGLVGSAKQG 243

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +  I+ V+ G+ ++  R +++ +++     +
Sbjct: 244 NRRIIFVITGLDSAAARAEESEKIVNWAFRQ 274


>gi|296533026|ref|ZP_06895674.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis
           ATCC 49957]
 gi|296266655|gb|EFH12632.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis
           ATCC 49957]
          Length = 293

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 107/273 (39%), Positives = 168/273 (61%), Gaps = 4/273 (1%)

Query: 22  IYIQRNIQLMGKILFLSII--MISMASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPA 78
           +   R ++ +G +   +++  +  +A       +Y+++VI+ N   +      D PR+PA
Sbjct: 1   MQFARALRRLGLLAATTVLFNLPGLAQAQIGSARYAAVVIEPNSGNVLFGANADAPRHPA 60

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           SLTKMMTLY++F+ L++ +L L+ ++ +++TAA++ PSKL L      T E  I AL+T+
Sbjct: 61  SLTKMMTLYMVFDALRAGRLELDQRLEMTETAASRPPSKLGLPPGRTITVENAIYALVTK 120

Query: 139 SANDVSTAFGEFI-SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           SANDV+   GE + +GSE +FA +M+ +A+ +GM +T ++NASGL D  QITTA D A L
Sbjct: 121 SANDVAALLGETLGAGSEARFAQMMTLRARAMGMTSTTFRNASGLPDVEQITTAHDMATL 180

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
           G  L  +FP+ Y YF  R  R  +  + NHN++L++   +DGIKTGY  +SGFNIVTS R
Sbjct: 181 GRRLLHDFPERYHYFGTRTHRMGSIALRNHNRMLDEYEGVDGIKTGYINDSGFNIVTSAR 240

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
             +  +V  V G  +  ERD+ A  L+     +
Sbjct: 241 RSNVRLVVAVFGGSSWVERDRHAAALLERGFSQ 273


>gi|260892753|ref|YP_003238850.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ammonifex degensii KC4]
 gi|260864894|gb|ACX52000.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ammonifex degensii KC4]
          Length = 381

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 74/274 (27%), Positives = 146/274 (53%), Gaps = 7/274 (2%)

Query: 24  IQRNIQLMGKILFLSIIMI---SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-AS 79
           ++R    +  +L  S+++    + AS   +    S+++++ +  Q+ G K+   + P AS
Sbjct: 1   MRRKALFLTTLLAFSLLVANSRACASPFLSTTAKSAVLMEAHHGQILGEKELHRKQPIAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           + K+MTL +  E ++  K+ L  ++  S+ AA+   S+++L  +   +    ++A+ T S
Sbjct: 61  MVKLMTLLLAVEAVEQGKVRLADKVTASEHAASMGGSQIFLAPEEVMSFRDLLIAVATAS 120

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AND S A  E ++GSE+ F   M+ KA+ +GM+NT Y NA+GL  + Q +TA DQA+L  
Sbjct: 121 ANDASVAVAEHVAGSEEAFVAAMNAKARALGMENTHYVNATGLPAEGQYSTAYDQALLLR 180

Query: 200 LLRKNFPQYYKYFSIRKF--RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              K  P + +   I+++  R     + N NKLL         KTG+T  +G+ + ++ +
Sbjct: 181 EALK-HPLFLELAQIKEYSLRGGKFKLYNTNKLLWWYRGTIAGKTGWTEEAGYCLASAAK 239

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
            +   ++ VV+G P  +   ++++++      + 
Sbjct: 240 RQGLTLITVVLGCPEPRSHFRESIKIYNWGFARY 273


>gi|23099297|ref|NP_692763.1| D-alanyl-D-alanine carboxypeptidase [Oceanobacillus iheyensis
           HTE831]
 gi|22777526|dbj|BAC13798.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
           [Oceanobacillus iheyensis HTE831]
          Length = 388

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 81/274 (29%), Positives = 138/274 (50%), Gaps = 12/274 (4%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAK-----PKYSSIVIDVNKNQMTGFKQD-EPRYPAS 79
           RNI ++G +  L       A E + +        S I+++ +   +   K   E   PAS
Sbjct: 5   RNIMIIGLLGVLFFGHTVSAEESNQEVNLIEDATSGILMEQDTGTILYDKNAHEQLPPAS 64

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MTL +I E L+   +  +  + VS  AA+   S+++L+     T    +  +   S
Sbjct: 65  MTKIMTLLLIMESLEKGDIAKDDVVIVSDKAASMGGSQIFLEAGEEMTVNDLLKGVAVAS 124

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND S A  E I+GSE+ F   M+ KAK++ ++NT+++N +GL ++N  ++A D AI+  
Sbjct: 125 GNDASVALAEKIAGSEEAFVNKMNEKAKELNLKNTLFQNTTGLPEENHYSSAYDMAIMAN 184

Query: 200 LLRKNFPQYYKYFSI-----RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
            L K      +Y SI     R+ +     + N NKL+      DG+KTGYT  + + +  
Sbjct: 185 ELLK-HESITEYTSIYEDYLRQGQDNEFWLVNTNKLVRFYKGADGLKTGYTSEAKYCLTA 243

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           + +  +  +VAVVMG  + +ER+    EL+    
Sbjct: 244 TAKRDNMRVVAVVMGAKSPKERNSMVTELLDYAF 277


>gi|116751475|ref|YP_848162.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
           [Syntrophobacter fumaroxidans MPOB]
 gi|116700539|gb|ABK19727.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Syntrophobacter fumaroxidans MPOB]
          Length = 462

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 83/258 (32%), Positives = 143/258 (55%), Gaps = 4/258 (1%)

Query: 35  LFLSIIMISMASELHAK---PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIF 90
           L L++ ++S+ S L A       S++V+D++   +   K  D+   PAS+TK++TLYI+F
Sbjct: 12  LALALSVVSVQSVLAAPFTVNARSAMVVDMSNGVVLYEKNADDLIAPASITKVLTLYIVF 71

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           + ++  ++ L+ ++ +S  AA    S++ +K  T  + E+ I  +   S ND   A  E 
Sbjct: 72  DAIREGRIRLDDRVEISSRAAKTTGSRMGVKAGTRVSLEELIKGMAVVSGNDACVAVAEH 131

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           ISG+ + F   M+ KA+++GM ++ +   +GL  K Q+TTARD A L I   + FP    
Sbjct: 132 ISGNVEAFVRKMNAKARELGMNSSRFMTPNGLPAKGQLTTARDIARLSIAYLRRFPDSLT 191

Query: 211 YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             S++ + Y      N N+LL     +DG+KTG+   SG+NI  + R  +  I+AVV+G 
Sbjct: 192 IHSMQAYSYGTSSHHNANRLLATCPGVDGLKTGFVCASGYNITATARRGNTRILAVVLGA 251

Query: 271 PTSQERDQKALELITSFL 288
           PT   R ++  +L+ +  
Sbjct: 252 PTPGVRLRETTKLLEAGF 269


>gi|254562080|ref|YP_003069175.1| penicillin binding protein, beta-lactamase/transpeptidase-like
           superfamily [Methylobacterium extorquens DM4]
 gi|254269358|emb|CAX25324.1| putative penicillin binding protein,
           beta-lactamase/transpeptidase-like superfamily
           [Methylobacterium extorquens DM4]
          Length = 403

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 70/265 (26%), Positives = 133/265 (50%), Gaps = 6/265 (2%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           ++  I+   +      ++        +I+ID +   +   K  DEP  PAS+ K+MT  I
Sbjct: 1   MLAAIVSAFLHPAPSRAQTFQTAAAHAILIDADSGSVLFEKAADEPFSPASMAKLMTAEI 60

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRSANDV 143
           +F  ++  +L ++++  V++ A  +       S ++ +  +       +  LI +S ND 
Sbjct: 61  VFRAIKEGRLSMDSEFTVTEDAWRRGGAGGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDA 120

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           +    E ++G+E  FA +M+ +AK+IG+  + ++NA+G    +Q  TARD A +   L  
Sbjct: 121 AITIAENMAGTEDAFAGMMNQRAKEIGLTRSTFRNATGYSAPDQKVTARDMARIAQHLID 180

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
            +P++YK +S R+F +      N N LL      DG+KTGY   SG+ +  S       +
Sbjct: 181 TYPEFYKIYSEREFTWNRIKQQNRNPLLTLDIGADGLKTGYLEESGYALTGSAVQNGQRL 240

Query: 264 VAVVMGMPTSQERDQKALELITSFL 288
           + VV G+ T+++R  +A +++    
Sbjct: 241 IMVVSGLKTARDRAAEARKMMEWGF 265


>gi|323142851|ref|ZP_08077563.1| D-alanyl-D-alanine carboxypeptidase DacA [Succinatimonas hippei YIT
           12066]
 gi|322417393|gb|EFY08015.1| D-alanyl-D-alanine carboxypeptidase DacA [Succinatimonas hippei YIT
           12066]
          Length = 429

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 147/297 (49%), Gaps = 20/297 (6%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSK 96
           + +++       A+   S +++D +  Q+      + + +PASLTKMMT Y+I   +++ 
Sbjct: 58  APLVLPSPPTFDAE---SWVLMDYHSGQVLFEHNGQKKIWPASLTKMMTSYVIGMEIKAG 114

Query: 97  KLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           +L  + Q+ +++ A ++N    SK++++     + +     +I +S ND   A    ++G
Sbjct: 115 RLKPDDQVMITEEAWSKNYSDSSKMFIEVGDTVSVDSLNKGIIIQSGNDACVAMAIHLAG 174

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           SE  F  +M+  AK++G+ +T + N  GL  ++  +TA D A+LG  L ++ P+ Y  ++
Sbjct: 175 SEAGFVSVMNTYAKQLGLNHTHFSNVHGLFSEDNYSTAYDMALLGRALIRDLPEEYSIYA 234

Query: 214 IRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            ++F +     +N N+LL  K  N+DGIKTG+    G+N+V S    +  ++A V+G  +
Sbjct: 235 QKEFTFNGIKQSNRNRLLWDKTLNVDGIKTGHLSQVGYNLVASAPSGNMRLIASVIGAKS 294

Query: 273 SQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKID 329
             +R     ++++       L             T  K+   I K +        +D
Sbjct: 295 ESQRADFCRQMLSYGFRFFELY------------TPFKQGQSILKREVRLGDTDSVD 339


>gi|86136162|ref|ZP_01054741.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. MED193]
 gi|85827036|gb|EAQ47232.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. MED193]
          Length = 391

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 79/286 (27%), Positives = 139/286 (48%), Gaps = 9/286 (3%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYII 89
           +  I    + + ++    +     ++ V+D   + +   K  E P  PAS++K+MTLY+ 
Sbjct: 8   LALIGGFGLCLTALPLAAYDTRARAAFVLDQGTDTVLLSKNAEVPLPPASMSKLMTLYVA 67

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           FE L+  +L L+ ++PVS  A +   S ++L        E  +  +I  S ND      E
Sbjct: 68  FEALRDGRLSLDERLPVSAHAMSYGGSTMFLDTTDRVRVEDLLRGIIVLSGNDACAVIAE 127

Query: 150 FIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            +S  G+E  FA  M+ +A ++GM N  + N++G        + RD  +L   L ++FPQ
Sbjct: 128 ALSPDGTEAGFARYMTKRAHELGMMNASFANSNGWPAIGHRMSMRDLGVLAEHLIEDFPQ 187

Query: 208 YYKYFSIRKFRYRNR---IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           YY  FS + F +  R      N N LL      DG+KTG+T  +G+ +V S    D  ++
Sbjct: 188 YYPLFSEKSFAFDGRAPSNTRNRNPLLGLGIGADGLKTGHTSEAGYGLVGSAVQGDRRVI 247

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLK 310
            VV G+ +++ R ++A  ++     +     ++T  K  +S  S +
Sbjct: 248 FVVTGLESNKARAEEAEAIVNWSFRQ---FAKKTVAKAGVSVASAE 290


>gi|255066778|ref|ZP_05318633.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria sicca ATCC
           29256]
 gi|255048853|gb|EET44317.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria sicca ATCC
           29256]
          Length = 417

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 79/236 (33%), Positives = 131/236 (55%), Gaps = 2/236 (0%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
            IV D++ +Q+      D    PASLTKMMT Y+ F+ L++  L  +  + VS       
Sbjct: 66  YIVTDLHSHQVLASNNIDTQIEPASLTKMMTAYLTFKALENGTLRADQMLTVSDAGWKIE 125

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQN 173
            S+++L  K   +    I  +I +S ND +T   E + G S   F   M+ +AK++GM  
Sbjct: 126 GSRMFLIPKVPASVSDLIKGMIVQSGNDAATTLAEAMGGGSVDVFVQQMNEEAKRLGMTK 185

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           T +KN +GL  +  ++T  D AIL   L  ++P+YY  FSI+ F+Y N    N N LL +
Sbjct: 186 THFKNPTGLAAEGHVSTVGDLAILSAALIHDYPKYYPVFSIKSFKYNNVEQPNRNLLLYR 245

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
             N+DG+KTG+T ++G+N+  S +     IV++V+G  +++ R  ++ +L+   L+
Sbjct: 246 DSNVDGLKTGHTESAGYNLAASSKRNGRRIVSIVVGTDSTEARASESGKLLNWALQ 301


>gi|146296751|ref|YP_001180522.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410327|gb|ABP67331.1| D-Ala-D-Ala carboxypeptidase DacF, Serine peptidase, MEROPS family
           S11 [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 384

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 89/322 (27%), Positives = 153/322 (47%), Gaps = 13/322 (4%)

Query: 24  IQRNIQLMGKILFLSIIMISMAS------ELHAKP---KYSSIVIDVNKNQMTGFKQ-DE 73
           ++R + L+    FLS +    A       EL   P     S+I++D +  ++   K   E
Sbjct: 1   MKRILTLLILSFFLSSLNFIRAFCQTQNNELTNSPELSAMSAILVDFDTGRVLFEKNSHE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
              PAS+TK+MT+ +I E ++  KL L+ ++  S+ AA+   S++YLKE    T E+ + 
Sbjct: 61  KLPPASITKIMTMILICEAIEKGKLKLSDKVIASQNAASLGGSQVYLKENEEMTVEELLK 120

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           ++   SAND   A  E ++GS + F  +M+ KAK++GM +T + N  GL  +   T+A D
Sbjct: 121 SIAIASANDACVALAEHLAGSVQGFVYMMNQKAKELGMLDTNFVNPYGLDAEGHYTSAYD 180

Query: 194 QAILGILLRKN-FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
            A++   L K+   + Y    +   R     +TN NKL+       G+KTG T  + F I
Sbjct: 181 VAVMSRELLKHKLVRNYLTTWVDTVRDGKFGLTNTNKLVRFYRGCTGVKTGSTDKAKFCI 240

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
             S +     ++AV+M  P S+ R  +A+ L+              + KD        ++
Sbjct: 241 SASAQRNALHLIAVIMAAPDSKTRFNEAVRLLDWGFAN--FAMYAPYAKDFSFGKVRVRN 298

Query: 313 LMIKKLKRTYSQFKKIDAKAHS 334
            + K++     +  K+  K   
Sbjct: 299 GLKKEVSAVLERDVKLLVKKGD 320


>gi|325265494|ref|ZP_08132216.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
 gi|324029273|gb|EGB90566.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
          Length = 423

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 77/280 (27%), Positives = 140/280 (50%), Gaps = 14/280 (5%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           +   E+ A    S+++++ +  ++   K  D  R PAS+TK+MT+ +IF+ L   K+ L 
Sbjct: 63  TAGPEVSAP---SAVLMEASTGEVIFEKDADTARPPASVTKIMTMLLIFDALADGKIKLE 119

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
            Q+  S+ AA+   S+++L+     T +  +  +   SAND   A  E+I G+E++F   
Sbjct: 120 DQVTTSEFAASMGGSQVFLEPGETQTVDTMLKCISVASANDACVAMAEYICGNEEEFVKQ 179

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           M+ +AK +GM+NT + N +GL     +TTARD A++   +   +PQ + Y  I      +
Sbjct: 180 MNERAKGLGMENTHFVNCNGLDVDGHVTTARDIALMSREMITKYPQIHDYCMIWMENITH 239

Query: 222 RI--------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                     +TN NKL+ +     G+KTG T  + F +  + +  D  ++AV+M    S
Sbjct: 240 TTKKGTTEFGLTNTNKLVRQYEYATGLKTGSTGLAKFCVSATAKKNDIEMIAVIMAAGDS 299

Query: 274 QERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSL 313
           + R + A  L+     K  +   ++   + L    +K  +
Sbjct: 300 KARFKDATTLLNYGFGKCQVYKDESP--EKLKDLEVKGGV 337


>gi|262168638|ref|ZP_06036333.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC27]
 gi|262022756|gb|EEY41462.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC27]
          Length = 339

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 4/221 (1%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTT 128
           D    PASLTKMMT Y+I + ++   + LN  + +SK A  +N    SK++++  T    
Sbjct: 7   DTKLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKV 66

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
                 +I +S ND   A  E ++G+E  F  LM+  A  +GM+N+ + N+ GL D N  
Sbjct: 67  SDLNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLY 126

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRN 247
           +T  D A+LG  L ++ P+ Y  +S +KF Y      N N LL  K  N+DGIKTG+T  
Sbjct: 127 STPYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSG 186

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +G+N+V+S    +  +VAVVMG      R  ++ +L++   
Sbjct: 187 AGYNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGF 227


>gi|110678603|ref|YP_681610.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter
           denitrificans OCh 114]
 gi|109454719|gb|ABG30924.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter
           denitrificans OCh 114]
          Length = 485

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 96/262 (36%), Positives = 148/262 (56%), Gaps = 2/262 (0%)

Query: 32  GKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIF 90
           G   F  + M+ +     A   Y++ V+D    ++   +  D   +PASLTKMMTLYI F
Sbjct: 12  GLYAFAVLWMLVILPLTAAAAPYAAFVMDARTGEVLHSRNADTRLHPASLTKMMTLYIAF 71

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           + +++ ++ L+T++ +S+ AA + PSKL LK          I A   +SAND +TA GE 
Sbjct: 72  QAVENGEISLDTKVKISRFAAAEPPSKLGLKSGQRIAFRYLIRAAAIKSANDAATAIGEA 131

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           + GSE  FA  M+  AK++GM  T +KNA GL +   ++TARD ++LG  +  ++P+YY 
Sbjct: 132 LEGSEAAFARRMNRTAKELGMTRTTFKNAHGLTESGHMSTARDMSLLGRHVLYDYPEYYN 191

Query: 211 YFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            FS R      R + N N +LL      DGIKTGYTR +GFN+V S     + I+A V G
Sbjct: 192 LFSRRSTHAGVRDVANTNRRLLAAYRGADGIKTGYTRAAGFNLVASAERGQERIIATVFG 251

Query: 270 MPTSQERDQKALELITSFLEKK 291
             ++  R+++  EL+    ++ 
Sbjct: 252 GTSTIARNKRVAELLDMGFKRA 273


>gi|218675296|ref|ZP_03524965.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli GR56]
          Length = 370

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/274 (32%), Positives = 147/274 (53%), Gaps = 6/274 (2%)

Query: 57  IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           I++DV   ++   ++     YPASLTK+MT+Y +F+ +++ ++ L+T I +SK AA Q  
Sbjct: 31  ILVDVQTGRVLEHEEAFRKWYPASLTKLMTVYTVFDAIRAGQISLDTPIVMSKRAAAQPA 90

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           +K+Y K     T +  +  L+ +SANDVS A  E I G+++ F   M+ +A K+GM ++ 
Sbjct: 91  AKMYFKPGQKLTLDSALKILLVKSANDVSVAVAEAIGGTQEGFVTRMNGEALKLGMTDSH 150

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           + N +GL  K Q TTARD A+L + LR++FPQY  YF++  F    + + N N L+ +  
Sbjct: 151 FVNPNGLPGKGQYTTARDLAVLTVALRRDFPQYASYFALEGFTTGQQNVPNLNMLIGRFA 210

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK---- 291
             DG+KTG+   SGFN + S       +V+VV+G  +   R      L+      +    
Sbjct: 211 GADGMKTGFICASGFNQIGSATRNGRTLVSVVLGTDSLAARADATANLLQKGFTTQFPGN 270

Query: 292 -TLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
            TL   + + +     T +   +   K  +  S+
Sbjct: 271 DTLGSLKAYEQGQDQVTDITADICSAKGAKIRSE 304


>gi|298293245|ref|YP_003695184.1| serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506]
 gi|296929756|gb|ADH90565.1| Serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506]
          Length = 461

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 79/278 (28%), Positives = 144/278 (51%), Gaps = 7/278 (2%)

Query: 56  SIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++VI+V   ++       +P YPAS+TK+MT Y+ F+ ++  +L   T + VS  A  Q 
Sbjct: 36  ALVIEVESGKVLLADDATKPWYPASITKLMTAYVTFKAIRQGRLTPETLLTVSANAVAQK 95

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           PSK+  K  T  T +  +  ++ +SAND++    E +SGS   F   M++ A ++GM  +
Sbjct: 96  PSKMGFKAGTQLTVDNALKMMLVKSANDMAVVLAEGVSGSLPAFVAEMNSTAAQLGMTGS 155

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            + N +GL D + ++TARD A+L   +  +FP+    F I   +    +I ++NKL+++ 
Sbjct: 156 HFANPNGLPDPDNVSTARDLAVLARHIFLDFPEQADLFRIPAMKLGTAVIRSYNKLIDRY 215

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK---- 290
              DG+KTG+   SGFN+V S +  +  ++ VV+G  + + R ++A  L+    +     
Sbjct: 216 PGADGMKTGFICASGFNLVASAKRGNRHLLVVVLGTQSGRARTEQAALLLERGFQHSWQI 275

Query: 291 --KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
                   +  R +  +   ++  +   K K T S+  
Sbjct: 276 FGAMAPTVEALRNEGGAPADMRAQVCGGKRKNTASEDD 313


>gi|220903565|ref|YP_002478877.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219867864|gb|ACL48199.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 378

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 129/236 (54%), Gaps = 1/236 (0%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+ D++ + +   +  D+   PASLTK++++++  + +   KL L+  + VS+ AA  
Sbjct: 50  SAILYDLDHDAILFEQNADQRIAPASLTKVLSMFLALDSVDQGKLSLDNTVTVSRAAAGT 109

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S++ L+E    + EQ ++ +   S ND S A  E + GS   F  +M+ KA+ +GM++
Sbjct: 110 GGSRMGLRENDVVSLEQLLMGMAVSSGNDASMAVAECVGGSTPAFVAMMNAKAQALGMRD 169

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           + ++N  GL  K Q TTARD   L     +  PQ  ++ +     ++ R+  N N LL +
Sbjct: 170 SQFRNPHGLPAKGQYTTARDMLTLARAYLQAHPQALRFHNTHTISHKGRVTWNKNPLLGQ 229

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
               DG+KTG+   SG+N++ +       ++AV++G P S+ R  +A  L+ +  +
Sbjct: 230 YPGADGLKTGWVNASGYNLIFTASQGPRRLLAVILGAPDSRTRGVEAFRLLDAGFQ 285


>gi|99078561|ref|YP_611819.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruegeria sp. TM1040]
 gi|99035699|gb|ABF62557.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruegeria sp. TM1040]
          Length = 393

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 78/277 (28%), Positives = 143/277 (51%), Gaps = 8/277 (2%)

Query: 26  RNIQLMGKILFLSIIMISMASELHA--KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           R I L    +   + + S  + + A      ++ V+D   N +   K  D P  PAS++K
Sbjct: 4   RCISLTCIGVLAGLWIASSTTAVQAFETKARAAYVVDQGTNTVLLSKNADVPMPPASMSK 63

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MTLY+ FE ++  +L ++ ++PVS+ A +   S ++L        E  +  +I  S ND
Sbjct: 64  LMTLYVAFEAVRDGRLTMDERLPVSEHAMSYKGSTMFLDTTDRVRVEDLLRGIIVLSGND 123

Query: 143 VSTAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
                 E +S  G+E  FA  M+ +A+++GM ++ + N++G  D     + RD AIL   
Sbjct: 124 ACAVIAEALSPDGTEAGFARYMTRRARELGMNDSTFMNSNGWPDDGHRMSVRDLAILAEH 183

Query: 201 LRKNFPQYYKYFSIRKFRYRNR---IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
           L ++FP++Y  F+ + F +  R      N N LL      DG+KTG+T+ +G+ +V S +
Sbjct: 184 LIEDFPEFYPMFAEQVFEFDGRAPSNTRNRNPLLQLDIGADGLKTGHTQEAGYGLVGSAK 243

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
             D  ++ V+ G+ ++ ER +++  ++     + T K
Sbjct: 244 QGDRRVIFVISGLNSTPERAEESEAIVNWSFRQFTKK 280


>gi|121535761|ref|ZP_01667563.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus
           carboxydivorans Nor1]
 gi|121305660|gb|EAX46600.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus
           carboxydivorans Nor1]
          Length = 390

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 70/276 (25%), Positives = 133/276 (48%), Gaps = 15/276 (5%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP----------KYSSIVIDVNKNQMTGFKQDEPR 75
           R I +M  + F+   +++      A P            S++++D N   +   K+   R
Sbjct: 5   RLITVMTLVCFMFFQLMASLPIAWAAPLRTPAQLETTAESAVLMDAN-GAVLWEKEPHKR 63

Query: 76  -YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
             PAS+TK+MTL +  E ++  ++     +  S+ A  Q  S+++L+     T ++ ++A
Sbjct: 64  LPPASVTKVMTLLLAVEAVEQGRIKPTDLVYTSEHAWRQGGSQIWLEPGEAMTVQEMMIA 123

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +   SAND + A  E I GSE+     M+ +A  +G+QNT + N +GL  ++   +A D 
Sbjct: 124 VAVVSANDAAVALMEHIYGSEQAAVEAMNKRAASLGLQNTHFVNVNGLPAQDHYMSAYDT 183

Query: 195 AILGILLRKNFPQYYKYFSIRKF--RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           A+L     +  P Y +   I+++  R     + N NKLL      DG+KTG+T  + +  
Sbjct: 184 ALLVKEAVR-HPLYMELCGIKEYWLREGKNWLVNTNKLLWWYKGADGLKTGWTEEAKYCF 242

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
             + +     ++AVV   P  +   +++++L+    
Sbjct: 243 AGTAKRDGLRLIAVVFATPEPRSHLRESMKLMDWGF 278


>gi|165933122|ref|YP_001649911.1| D-alanyl-D-alanine serine-type carboxypeptidase [Rickettsia
           rickettsii str. Iowa]
 gi|165908209|gb|ABY72505.1| D-alanyl-D-alanine serine-type carboxypeptidase [Rickettsia
           rickettsii str. Iowa]
          Length = 306

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 100/278 (35%), Positives = 158/278 (56%), Gaps = 7/278 (2%)

Query: 30  LMGKILFLSIIMISMASELHA------KPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTK 82
           L+  IL ++     ++    A       P  +S+VID    ++      + R YPASLTK
Sbjct: 6   LLPYILVVTFFFAPISEAKKAVRNTPKPPVQTSLVIDAKSGKVLQAHNSQIRIYPASLTK 65

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MTLY++FE +++ KL L+ ++ VS  AA   P KL LK     T  + I  LI +SAND
Sbjct: 66  LMTLYLMFEAIEAGKLPLDKKLLVSAKAAKMPPCKLGLKAGETITVREAINGLIIKSAND 125

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            +    E + GSEK FA LM+ KAK++GM+NT +KNASG HD  Q TTARD A L + L+
Sbjct: 126 AAVTVAEGMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHDPLQQTTARDIAKLAMALK 185

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           +++P++Y  F+   F +R  ++  HN++       +G+KTG+   +G+N+VT+       
Sbjct: 186 RDYPKFYPLFAKTSFVFRGNVVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKS 245

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           ++AVV G  +++ RDQK + L+      K +  +   +
Sbjct: 246 LIAVVTGGKSAESRDQKMMGLLDQHFNIKPIVSKPAIK 283


>gi|27379630|ref|NP_771159.1| penicillin binding protein [Bradyrhizobium japonicum USDA 110]
 gi|27352782|dbj|BAC49784.1| penicillin binding protein [Bradyrhizobium japonicum USDA 110]
          Length = 451

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 128/251 (50%), Gaps = 10/251 (3%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++I+I+ +   +   K  DE R P+S+ K+MT  ++F  +Q   + L  +  +S+ A 
Sbjct: 90  APTAILIEASSGSVLFEKNADELRAPSSMMKLMTAEVVFNAIQKGDIKLTDEYRISENAW 149

Query: 112 TQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA-ILMSNK 165
            +       S ++    +  + +  +   I +S ND   A  E ++G+E+ FA   M+ +
Sbjct: 150 RKGGAPSGGSTMFAAINSKVSVDDLLHGAIIQSGNDACIALAEAMAGNERIFAADFMTKR 209

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
           A+++GM  + + N++GL D     T R+  IL   +  +FP++YK F  +++ +      
Sbjct: 210 ARELGMTKSTFGNSNGLPDPGNKMTVRELGILARHIILDFPEFYKLFGEKEYTWNKIRQP 269

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N N LLN M   DG+KTGYT+  G+ +V S       ++ VV G+   ++R  +A +++ 
Sbjct: 270 NRNPLLNSMEGADGLKTGYTKEGGYGMVGSAVQNGTRLIVVVNGLEDPEDRATEAKKMLE 329

Query: 286 SF---LEKKTL 293
                 E +TL
Sbjct: 330 WGFRNFETRTL 340


>gi|240851366|ref|YP_002972769.1| penicillin-binding protein [Bartonella grahamii as4aup]
 gi|240268489|gb|ACS52077.1| penicillin-binding protein [Bartonella grahamii as4aup]
          Length = 363

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 93/292 (31%), Positives = 156/292 (53%), Gaps = 11/292 (3%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL 93
           LF S+I+   ++   A+P  S   +DV    +    Q  E  YPASLTK+MT Y+IF  +
Sbjct: 8   LFFSVILSLFSAIALAQPFIS---VDVTTGHILKHNQAFERWYPASLTKLMTAYVIFRAM 64

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
              ++  N  I +S+ AA     +   K  +  T +  +   + +S ND++ A  E ++G
Sbjct: 65  SRGEISPNKHITISEYAAKAPSYRSGYKAGSVLTLDTALSITMVKSTNDLAIAMSEAVAG 124

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+K F   M+++AK++GM  T + NASGL D    +TARD A+L + +R+ FPQY  YFS
Sbjct: 125 SQKNFVRKMNSEAKRLGMFGTHFANASGLPDPQNYSTARDIALLAVQIRREFPQYAHYFS 184

Query: 214 IRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           I    + N  +I  N N L+ + + IDG+KTG+   SGFN+V S       I+ V++G  
Sbjct: 185 IPAIDFGNNRKIQHNSNNLIGRFYGIDGMKTGFICASGFNLVASATRNKRTIITVILGAN 244

Query: 272 TSQERDQKALELITSFL-----EKKTLKHQQTHRKDNLSSTSLKKSLMIKKL 318
              ER++KA +L+ +        + TL   + + ++   + ++++     + 
Sbjct: 245 NITEREEKAAQLLETGFLHQGRPQLTLATLKPYGRNITQANNMRQQTCTPEA 296


>gi|294650880|ref|ZP_06728227.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292823298|gb|EFF82154.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 397

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/301 (27%), Positives = 149/301 (49%), Gaps = 18/301 (5%)

Query: 44  MASELHAKPK---YSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
            A+ L A P+    S +++D    Q+   K  DE   PAS+TKMMT +II + L   KL 
Sbjct: 34  AATVLSAPPELNNKSYVLMDYETGQILAAKNEDEKLAPASMTKMMTSFIIEQKLLQGKLT 93

Query: 100 LNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
            +  + ++++A    +   S +Y+      T  + +  +I +S ND S A  E I+G+E 
Sbjct: 94  EDEHVRMNESAWCRGSSAESCMYVPLNGTATVLEMLRGIIVQSGNDASKAMAEHIAGNEG 153

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            FA +M+ +AK++GM NT + N++G+  +   +TA+D AIL   + K+  +YY  +S ++
Sbjct: 154 TFAHMMNQEAKRLGMTNTNFVNSTGMPAEGHYSTAKDMAILAQHIIKDSSKYYPIYSEKE 213

Query: 217 FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           F +      N N LL    ++DG+KTG+T  +GF + TS +     +++V+ G P+  ER
Sbjct: 214 FTFNGIKQGNRNALLYTDPSVDGLKTGHTSEAGFCLTTSSKRGPMRLISVIFGTPSMNER 273

Query: 277 DQKALELITSFL-----------EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQF 325
             +   L+                +   K +    K++     L ++  +   K    + 
Sbjct: 274 ANQTRALLAWGFANFETANVQPANQAIAKAKVWFGKEDEVQIGLAENFNVTMPKGQADKI 333

Query: 326 K 326
           K
Sbjct: 334 K 334


>gi|89902561|ref|YP_525032.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodoferax ferrireducens
           T118]
 gi|89347298|gb|ABD71501.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
           [Rhodoferax ferrireducens T118]
          Length = 394

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 86/314 (27%), Positives = 164/314 (52%), Gaps = 27/314 (8%)

Query: 30  LMGKILF--LSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           +M K+L    + + +S++++    P+ ++   ++ D+  NQ    K  D P   ASLTK+
Sbjct: 1   MMKKLLLTLAAAMCLSVSAQTPQPPEIAARSYLLFDITANQFLAEKDIDSPVEQASLTKL 60

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT YI+F+ L+SKK+ L   +PVS+ A     S++++  K     E  +  +I +S ND 
Sbjct: 61  MTAYIVFDALRSKKIDLKQMLPVSEHAWKMPGSRMFIDPKMKVPVEDLLKGMIVQSGNDA 120

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           + A  E + G+ ++F  LM+ +AK +GM++T YKN  GL +    TTARD +IL   L +
Sbjct: 121 TMALAEGVGGTVERFVQLMNEQAKALGMKSTNYKNPEGLTEAGHTTTARDLSILATRLMR 180

Query: 204 NFPQYYKYFSIRKFRYRNRII---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-- 258
           +FP Y  Y++I+++RY        +N N LL +   +DG+KTG+T  +G+ ++ + +   
Sbjct: 181 DFPDYVAYYAIKQYRYPGTPAANGSNRNLLLFRDPTVDGLKTGHTDAAGYCLIATAKRDF 240

Query: 259 ---------------KDDPIVAVVMGMPTSQERDQKALELITS-FLEKKTLKHQQTHRKD 302
                              ++++V+G  +   R  ++ +L+   +   + +K    ++  
Sbjct: 241 VGLGAPAAAGSPGATGSRRLLSIVLGATSENSRANESQKLLNWGYTAFEPVKLFDANQAV 300

Query: 303 NLSSTSLKKSLMIK 316
              +    K+ ++K
Sbjct: 301 VSPAVWKGKAAVVK 314


>gi|182625695|ref|ZP_02953464.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens D str.
           JGS1721]
 gi|177909097|gb|EDT71572.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens D str.
           JGS1721]
          Length = 402

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 85/314 (27%), Positives = 156/314 (49%), Gaps = 15/314 (4%)

Query: 24  IQRNIQ-LMGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRY 76
           +++ I+ +    +FLS+  I  +  + A+        S+++++ +  ++   K  +E   
Sbjct: 1   MKKYIRKIAAFAIFLSLFSIVSSVPVKAEEAIEVEARSALLMEASTGKIIYEKNANEKFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +  E +   ++ L+ QI VS+TA     S + L      T E+ I  + 
Sbjct: 61  PASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGSTMLLDVGEVRTVEEIIKGIG 120

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A  E++ GSE  F  +M+ +A+++GM+NT +KN +GL  +  ++TA D +I
Sbjct: 121 IASGNDAAVAMAEYLGGSESGFVEMMNKRAQELGMKNTTFKNCTGLPIEGHLSTAYDISI 180

Query: 197 LGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +   L K  P   KY      +I + R     + NHNKL+      DG+KTG+T ++ + 
Sbjct: 181 MSRELLK-HPTILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTNDAKYC 239

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTH--RKDNLSSTSL 309
           I  +       +++V+MG PT + R++ A  L+     K   K   T     + +  +  
Sbjct: 240 ISATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGFSKFESKQVATKDGEVEQIPMSQT 299

Query: 310 KKSLMIKKLKRTYS 323
               +I K K   +
Sbjct: 300 GDKFIIGKAKDDLT 313


>gi|332653043|ref|ZP_08418788.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium
           D16]
 gi|332518189|gb|EGJ47792.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium
           D16]
          Length = 367

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 67/263 (25%), Positives = 116/263 (44%), Gaps = 10/263 (3%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+++++    ++   K  D PR  AS TK+MT  +  E        L   + +   AA
Sbjct: 32  AQSAVLMEAESGRVLYAKDADTPRLIASTTKLMTALVALESGH----SLEEDVTIPAEAA 87

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S LYLK       E  +  ++  S ND +TA     +GS + FA  M+ K++++GM
Sbjct: 88  GVEGSSLYLKTGETVKLETLLYGMLLHSGNDAATAVALTCAGSLEAFAQKMNEKSQQLGM 147

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
            N+ + N +GL  +   ++A D A+L        P+  +  + R      R   NHNKLL
Sbjct: 148 TNSHFTNPTGLDGEEHYSSAYDMALLARACL-AVPELKEITATRSTTMEGRTFVNHNKLL 206

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
            +     G+KTGYT+ +G  +V++       ++AV +  P+           +    E  
Sbjct: 207 WRYEGCVGMKTGYTQAAGRTLVSAAERDGMTLIAVTLNAPSDWADHAAM---LDYGFEHY 263

Query: 292 TLKHQQTHRKDNLSSTSLKKSLM 314
            +  +      +L S  +  SL+
Sbjct: 264 HM-EEAVKAGQSLCSLPVSGSLV 285


>gi|209542214|ref|YP_002274443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209529891|gb|ACI49828.1| Serine-type D-Ala-D-Ala carboxypeptidase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 413

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 80/245 (32%), Positives = 130/245 (53%), Gaps = 5/245 (2%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + ++DV    +   K  DE   P+SLTKMMT YI+F  L+S +L L+  +PVS+ A    
Sbjct: 70  ACILDVTTGSVLLEKAADERMPPSSLTKMMTAYIVFGMLKSGRLKLDQMLPVSEKAWRMQ 129

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            SK+++        +  I  ++ +S ND      E ++GSE++F   M++ A +IG+ N+
Sbjct: 130 GSKMFVPLGQSIAVQDLIQGMVIQSGNDACIVLAEGVAGSEEQFVAQMNDMAARIGLSNS 189

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            + NA+G    N   +ARD A L + L ++FP+YY +FS + +R+      N N L++K 
Sbjct: 190 HFMNATGWPADNHYMSARDVAQLAVRLIRDFPEYYHFFSEKDYRFNKISQGNRNVLVDKG 249

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS---FLEKK 291
              DG+KTG+T   GF +  S     + +V  + GMP+S  R  +   L+       E  
Sbjct: 250 L-ADGLKTGHTDAGGFGLCASADRGGNRVVLSLNGMPSSNARAHEGERLLEWSFANFENA 308

Query: 292 TLKHQ 296
           TL  +
Sbjct: 309 TLFRK 313


>gi|168206139|ref|ZP_02632144.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens E str.
           JGS1987]
 gi|170662449|gb|EDT15132.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens E str.
           JGS1987]
          Length = 402

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 86/316 (27%), Positives = 159/316 (50%), Gaps = 19/316 (6%)

Query: 24  IQRNIQ-LMGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRY 76
           +++ I+ +    +FLS+  I  +  + A+        S+++++ +  ++   K  +E   
Sbjct: 1   MKKYIRKIAAFAIFLSLFSIVSSVPVKAEEAIEVEARSALLMEASTGKIIYEKNANEKFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +  E +   ++ L+ QI VS+TA     S + L      T E+ I  + 
Sbjct: 61  PASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGSTMLLDVGEVRTVEEIIKGIG 120

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A  E++ GSE  F  +M+ +A+++GM+NT +KN +GL  +  ++TA D +I
Sbjct: 121 IASGNDAAVAMAEYLGGSESGFVEMMNKRAQELGMKNTTFKNCTGLPIEGHLSTAYDISI 180

Query: 197 LGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +   L K  P   KY      +I + R     + NHNKL+      DG+KTG+T ++ + 
Sbjct: 181 MSRELLK-HPTILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTNDAKYC 239

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN----LSST 307
           I  +       +++V+MG PT + R++ A  L+     K   + +Q   KD+    +  +
Sbjct: 240 ISATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGFSK--FESKQVATKDSEVEQIPMS 297

Query: 308 SLKKSLMIKKLKRTYS 323
                 +I K K   +
Sbjct: 298 QTGDKFIIGKAKDDLT 313


>gi|62289988|ref|YP_221781.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str.
           9-941]
 gi|82699916|ref|YP_414490.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis biovar
           Abortus 2308]
 gi|225627545|ref|ZP_03785582.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo]
 gi|237815492|ref|ZP_04594490.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A]
 gi|254689296|ref|ZP_05152550.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 6 str.
           870]
 gi|254697432|ref|ZP_05159260.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254701819|ref|ZP_05163647.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis bv. 5 str. 513]
 gi|254706741|ref|ZP_05168569.1| D-alanyl-D-alanine carboxypeptidase [Brucella pinnipedialis
           M163/99/10]
 gi|254710152|ref|ZP_05171963.1| D-alanyl-D-alanine carboxypeptidase [Brucella pinnipedialis B2/94]
 gi|254714151|ref|ZP_05175962.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti M644/93/1]
 gi|254716791|ref|ZP_05178602.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti M13/05/1]
 gi|254730330|ref|ZP_05188908.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 4 str.
           292]
 gi|256031647|ref|ZP_05445261.1| D-alanyl-D-alanine carboxypeptidase [Brucella pinnipedialis
           M292/94/1]
 gi|256159791|ref|ZP_05457534.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti M490/95/1]
 gi|256255049|ref|ZP_05460585.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti B1/94]
 gi|256257546|ref|ZP_05463082.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 9 str.
           C68]
 gi|256369499|ref|YP_003107007.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915]
 gi|260168777|ref|ZP_05755588.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. F5/99]
 gi|260545262|ref|ZP_05821003.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038]
 gi|260754808|ref|ZP_05867156.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
           str. 870]
 gi|260758030|ref|ZP_05870378.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
           str. 292]
 gi|260761853|ref|ZP_05874196.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260883826|ref|ZP_05895440.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
           str. C68]
 gi|261218589|ref|ZP_05932870.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
 gi|261222240|ref|ZP_05936521.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94]
 gi|261314205|ref|ZP_05953402.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M163/99/10]
 gi|261317706|ref|ZP_05956903.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           B2/94]
 gi|261321914|ref|ZP_05961111.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
 gi|261752376|ref|ZP_05996085.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
           513]
 gi|261758258|ref|ZP_06001967.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99]
 gi|265988739|ref|ZP_06101296.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M292/94/1]
 gi|265998204|ref|ZP_06110761.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1]
 gi|297248388|ref|ZP_06932106.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str.
           B3196]
 gi|62196120|gb|AAX74420.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str.
           9-941]
 gi|82616017|emb|CAJ11050.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella
           melitensis biovar Abortus 2308]
 gi|225617550|gb|EEH14595.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo]
 gi|237790329|gb|EEP64539.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A]
 gi|255999659|gb|ACU48058.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915]
 gi|260096669|gb|EEW80544.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038]
 gi|260668348|gb|EEX55288.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
           str. 292]
 gi|260672285|gb|EEX59106.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260674916|gb|EEX61737.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
           str. 870]
 gi|260873354|gb|EEX80423.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
           str. C68]
 gi|260920824|gb|EEX87477.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94]
 gi|260923678|gb|EEX90246.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
 gi|261294604|gb|EEX98100.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
 gi|261296929|gb|EEY00426.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           B2/94]
 gi|261303231|gb|EEY06728.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M163/99/10]
 gi|261738242|gb|EEY26238.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99]
 gi|261742129|gb|EEY30055.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
           513]
 gi|262552672|gb|EEZ08662.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1]
 gi|264660936|gb|EEZ31197.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M292/94/1]
 gi|297175557|gb|EFH34904.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str.
           B3196]
          Length = 410

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 103/264 (39%), Positives = 160/264 (60%), Gaps = 6/264 (2%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMM 84
           R  +    + F + ++ +      A    S +V D +  +M G         PASL KMM
Sbjct: 20  RISRFFASVAFGTAVLCASG----AMASTSWVVFDADSGRMLGQDDASAQHAPASLAKMM 75

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TLY+ FE L++ +LH +  +P+SK AA++   KL+LK     +T   +  +I  SAND +
Sbjct: 76  TLYLTFEALKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAA 135

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-NQITTARDQAILGILLRK 203
           T  GE+++GSE  FA LM+ +A++IGM++TI+ N SGL    +Q+TTARD A+LG+ LR+
Sbjct: 136 TVMGEYLAGSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRR 195

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           +FP+ Y  FS R F +R R+   HN L+ +   +DGIKTGYT  SG+N+V+S    +  +
Sbjct: 196 DFPEEYALFSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHL 255

Query: 264 VAVVMGMPTSQERDQKALELITSF 287
           V VV+G  ++ +RD +  +L+T F
Sbjct: 256 VGVVLGAGSAGQRDGQMAKLLTRF 279


>gi|158320620|ref|YP_001513127.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii
           OhILAs]
 gi|158140819|gb|ABW19131.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii
           OhILAs]
          Length = 386

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/279 (29%), Positives = 140/279 (50%), Gaps = 12/279 (4%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQ-DEPRYPA 78
           +++   ++   L +S+ + +        P      S+I+ID N   +   K   E   PA
Sbjct: 2   VKKFKIMICLSLIISLALSTAIVNGDTAPFDINAKSAILIDANTGTVLYEKNIHEKLPPA 61

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           S+TK+MT+ ++ E + S K+ LN ++ VS+ A+    ++LYL+     T E+ +  +  R
Sbjct: 62  SVTKIMTMLLVMEAIDSNKITLNDKVTVSERASKMGGTQLYLEPGEVKTVEELMKGVAIR 121

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           SAND S A GE I+G+E+ F   M+ +AK++GM NT + N +GL  +  +TTA D AI+ 
Sbjct: 122 SANDASLALGEHIAGTEELFVQEMNRRAKELGMNNTTFVNTNGLPAEGHVTTAYDIAIMS 181

Query: 199 ILLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
             L K     +K+ +              + + N N+L+N     +GIKTGYT  +   +
Sbjct: 182 RELLK-HKSIHKWLTTWMDTVVVGKRQSEQSLVNTNRLINSYQGANGIKTGYTTEALHCL 240

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
             S        ++V++  P+SQ R  +A +L+       
Sbjct: 241 SASATRGGTTFISVILAAPSSQVRFNEAAKLLDYGFANY 279


>gi|162147581|ref|YP_001602042.1| penicillin-binding protein 5 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161786158|emb|CAP55740.1| putative penicillin-binding protein 5 precursor [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 422

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 80/245 (32%), Positives = 130/245 (53%), Gaps = 5/245 (2%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + ++DV    +   K  DE   P+SLTKMMT YI+F  L+S +L L+  +PVS+ A    
Sbjct: 79  ACILDVTTGSVLLEKAADERMPPSSLTKMMTAYIVFGMLKSGRLKLDQMLPVSEKAWRMQ 138

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            SK+++        +  I  ++ +S ND      E ++GSE++F   M++ A +IG+ N+
Sbjct: 139 GSKMFVPLGQSIAVQDLIQGMVIQSGNDACIVLAEGVAGSEEQFVAQMNDMAARIGLSNS 198

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            + NA+G    N   +ARD A L + L ++FP+YY +FS + +R+      N N L++K 
Sbjct: 199 HFMNATGWPADNHYMSARDVAQLAVRLIRDFPEYYHFFSEKDYRFNKISQGNRNVLVDKG 258

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS---FLEKK 291
              DG+KTG+T   GF +  S     + +V  + GMP+S  R  +   L+       E  
Sbjct: 259 L-ADGLKTGHTDAGGFGLCASADRGGNRVVLSLNGMPSSNARAHEGERLLEWSFANFENA 317

Query: 292 TLKHQ 296
           TL  +
Sbjct: 318 TLFRK 322


>gi|332874743|ref|ZP_08442613.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6014059]
 gi|332737004|gb|EGJ67961.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6014059]
          Length = 397

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 87/328 (26%), Positives = 157/328 (47%), Gaps = 19/328 (5%)

Query: 18  PYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPK----YSSIVIDVNKNQMTGFKQ-D 72
            Y  + + R  +       L +   S A+ + + P      S +++D    Q+   K  +
Sbjct: 7   SYKILELPRMTRKSAIAALLLLPSFSYAATVLSAPPELNNKSYVLMDYETGQILASKNEN 66

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTE 129
           E   PAS+TKMMT YII + L   +L  N Q+ ++++A    + + S +Y+      T  
Sbjct: 67  EKLAPASMTKMMTSYIIEQKLLKGELTENEQVRMNESAWCKGSSSESCMYVPLNGTATVL 126

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           + +  +I +S ND S A  E I+G+E  FA +M+ +AK+IGM NT + N++G+  +   +
Sbjct: 127 EMLRGIIIQSGNDASKAMAEHIAGNEGTFAHMMNQEAKRIGMTNTQFINSTGMPAEGHYS 186

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
           TA+D A+L   + K+  +YY  +S ++F +      N N LL    ++DG+KTG+T  +G
Sbjct: 187 TAKDMAVLAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAG 246

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL-----------EKKTLKHQQT 298
           + + TS +     +++V+ G P+  ER  +   L+                +   K +  
Sbjct: 247 YCLTTSSKRGPMRLISVIFGTPSMSERADQTRALLAWGFANFETANVQPANQVLAKAKVW 306

Query: 299 HRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
             K+N     L ++  +   K      K
Sbjct: 307 FGKENEVQVGLAENFNVTMPKGKADGIK 334


>gi|303248189|ref|ZP_07334453.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio
           fructosovorans JJ]
 gi|302490453|gb|EFL50362.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio
           fructosovorans JJ]
          Length = 359

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 78/251 (31%), Positives = 133/251 (52%), Gaps = 5/251 (1%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+++ D+N   +   +  D    PASLTK++TLYIIF+ ++  KLH    + VS+ AA+Q
Sbjct: 95  SAMLWDMNTGGLLYEQNPDVQIPPASLTKILTLYIIFDAIRQGKLHPWDVVEVSQRAASQ 154

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI-SGSEKKFAILMSNKAKKIGMQ 172
             S + L+        + I  +   SAND   A  E++ +G+   F  +M++ A+++GM 
Sbjct: 155 GGSNMRLRAGESVKVTELIKGIAVASANDACMAMAEYLENGNPDAFVNVMNDTAQRLGMT 214

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
            + + N +GL    Q+TTARD   L     + FP+     S++ F + NR   N N LL 
Sbjct: 215 RSRFMNPNGLPADGQVTTARDMLRLASAYLEQFPKALTIHSMQFFTHNNRQRHNANALLG 274

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +    DG+KTG+   SG+NI+ + +  D  ++ VV+G  ++  R ++  +L+    +   
Sbjct: 275 RYEGADGLKTGFVCASGYNIIATAKRGDTRLIGVVLGSRSAGVRLRETSKLLDKGFK--- 331

Query: 293 LKHQQTHRKDN 303
           +   Q   KDN
Sbjct: 332 IVAAQKSAKDN 342


>gi|332857068|ref|ZP_08436374.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6013150]
 gi|332870006|ref|ZP_08438982.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6013113]
 gi|332726883|gb|EGJ58397.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6013150]
 gi|332732506|gb|EGJ63757.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6013113]
          Length = 397

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 87/328 (26%), Positives = 157/328 (47%), Gaps = 19/328 (5%)

Query: 18  PYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPK----YSSIVIDVNKNQMTGFKQ-D 72
            Y  + + R  +       L +   S A+ + + P      S +++D    Q+   K  +
Sbjct: 7   SYKILELPRMTRKSAIAALLLLPSFSYAATVLSAPPELNNKSYVLMDYETGQILASKNEN 66

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTE 129
           E   PAS+TKMMT YII + L   +L  N Q+ ++++A    + + S +Y+      T  
Sbjct: 67  EKLAPASMTKMMTSYIIEQKLLKGELTENEQVRMNESAWCKGSSSESCMYVPLNGTATVL 126

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           + +  +I +S ND S A  E I+G+E  FA +M+ +AK+IGM NT + N++G+  +   +
Sbjct: 127 EMLRGIIIQSGNDASKAMAEHIAGNEGTFAHMMNQEAKRIGMTNTQFINSTGMPAEGHYS 186

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
           TA+D A+L   + K+  +YY  +S ++F +      N N LL    ++DG+KTG+T  +G
Sbjct: 187 TAKDMAVLAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAG 246

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL-----------EKKTLKHQQT 298
           + + TS +     +++V+ G P+  ER  +   L+                +   K +  
Sbjct: 247 YCLTTSSKRGPMRLISVIFGTPSMSERADQTRALLAWGFANFETANVQPANQVLAKAKVW 306

Query: 299 HRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
             K+N     L ++  +   K      K
Sbjct: 307 FGKENEVQVGLAENFNVTMPKGKADGIK 334


>gi|218886223|ref|YP_002435544.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218757177|gb|ACL08076.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 481

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 75/248 (30%), Positives = 136/248 (54%), Gaps = 1/248 (0%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           ++ AS        S++++D++  ++   +  DEP  PASLTK++++Y+  + +++ K  L
Sbjct: 68  VAHASSHETLDVRSAMLLDMSTGRIIYEQNADEPIPPASLTKVLSMYVALDQVRAGKASL 127

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
              + VS+ A +   S+++LK+    T +  +  +   S ND S A  E I G+   F  
Sbjct: 128 KDTVKVSRRAFSTGGSRMFLKQGETLTLDDLLEGMAVSSGNDASVATAEHIGGNVDNFVQ 187

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
           +M+ KA+ +GM+N++++N  GL    Q TTARD   L       +P+  +Y S R  ++ 
Sbjct: 188 MMNAKARALGMKNSVFRNPHGLPAAGQHTTARDMLALSRAYLAQYPEALRYHSTRYIKHN 247

Query: 221 NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
             I TN N LL      DG+KTG+   SG+N++++++     ++AVV+G  T+Q R Q+ 
Sbjct: 248 KVITTNKNPLLGNCEGADGLKTGWVFASGYNLISTVKRGKTRLLAVVLGAETTQARAQEV 307

Query: 281 LELITSFL 288
             L+ +  
Sbjct: 308 NRLVEAGF 315


>gi|332981537|ref|YP_004462978.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis
           50-1 BON]
 gi|332699215|gb|AEE96156.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis
           50-1 BON]
          Length = 380

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 84/282 (29%), Positives = 138/282 (48%), Gaps = 20/282 (7%)

Query: 25  QRNIQLMGKILFLS-IIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-AS 79
           +  I L+   +F+S  +MIS A  +   P+ S+    V++V   ++   K  + R P AS
Sbjct: 3   RAVIFLLIFCVFMSPCLMISKALAVEDPPQISASVAAVMEVETGRVLYGKDADKRCPMAS 62

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
            TK+MT     E        L+  + VS  A+    S ++L+     T E  +  L+ RS
Sbjct: 63  TTKIMTAITAIECGD-----LSDIVEVSDNASGVEGSSIWLEVGERLTLEDLLYGLMLRS 117

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND + A  E I GS +KF  +M+NKAK+IG +NT + N  GL D++  TTA D A++  
Sbjct: 118 GNDAAVAIAEHIGGSVEKFVDMMNNKAKEIGARNTHFVNPHGLPDEDHYTTAYDLALITA 177

Query: 200 LLRKNFPQYYKYFSIR------KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
              KN P + +  S +      +    +R + N NKLL K    +G+KTGYT+ +G  +V
Sbjct: 178 YAMKN-PVFKQIVSTKYRKIPWEGHEWDRAMQNKNKLLWKYEGANGVKTGYTKEAGRCLV 236

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKH 295
            +       +VAVV+         + ++ L+    +  ++  
Sbjct: 237 AAAYRNGMQLVAVVL---NDGPMWEDSMALLDYGFDNFSMYE 275


>gi|189024230|ref|YP_001934998.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus
           S19]
 gi|189019802|gb|ACD72524.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus
           S19]
          Length = 397

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 103/264 (39%), Positives = 160/264 (60%), Gaps = 6/264 (2%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMM 84
           R  +    + F + ++ +      A    S +V D +  +M G         PASL KMM
Sbjct: 7   RISRFFASVAFGTAVLCASG----AMASTSWVVFDADSGRMLGQDDASAQHAPASLAKMM 62

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TLY+ FE L++ +LH +  +P+SK AA++   KL+LK     +T   +  +I  SAND +
Sbjct: 63  TLYLTFEALKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAA 122

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-NQITTARDQAILGILLRK 203
           T  GE+++GSE  FA LM+ +A++IGM++TI+ N SGL    +Q+TTARD A+LG+ LR+
Sbjct: 123 TVMGEYLAGSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRR 182

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           +FP+ Y  FS R F +R R+   HN L+ +   +DGIKTGYT  SG+N+V+S    +  +
Sbjct: 183 DFPEEYALFSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHL 242

Query: 264 VAVVMGMPTSQERDQKALELITSF 287
           V VV+G  ++ +RD +  +L+T F
Sbjct: 243 VGVVLGAGSAGQRDGQMAKLLTRF 266


>gi|83855085|ref|ZP_00948615.1| D-alanyl-D-alanine carboxypeptidase family protein [Sulfitobacter
           sp. NAS-14.1]
 gi|83842928|gb|EAP82095.1| D-alanyl-D-alanine carboxypeptidase family protein [Sulfitobacter
           sp. NAS-14.1]
          Length = 473

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 91/243 (37%), Positives = 135/243 (55%), Gaps = 2/243 (0%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
              Y++ VID    ++   +  D   +PASLTKMMTLYI FE ++  ++ L++++ ++  
Sbjct: 2   AAPYAAYVIDARTGEVLHSRNADTRLHPASLTKMMTLYIAFEAIKRGEISLDSKVKITSH 61

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           AA++ PSKL LK          I A   +SAND +TA GE I GSE KFA  M+  AK +
Sbjct: 62  AASEPPSKLGLKSGQTIALRYLIRAAAVKSANDAATAIGEAIEGSEAKFARRMNRTAKAL 121

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN- 228
           GM NT +KNA GL +   ++TA D  I+G  L  + P+YY  FS        R +++ N 
Sbjct: 122 GMTNTTFKNAHGLTESGHMSTAHDMTIMGRHLLYDHPEYYNLFSRITADAGVRKVSHTNR 181

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           + L+     DGIKTGYTR +GFN+  S    ++ I+  V G  ++  R+ K  EL+    
Sbjct: 182 RFLSSYKGADGIKTGYTRAAGFNLTASAERGNERIIVTVFGGTSTSARNAKVAELMDLGF 241

Query: 289 EKK 291
            + 
Sbjct: 242 RRA 244


>gi|226951361|ref|ZP_03821825.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           [Acinetobacter sp. ATCC 27244]
 gi|226837883|gb|EEH70266.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           [Acinetobacter sp. ATCC 27244]
          Length = 397

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 84/301 (27%), Positives = 149/301 (49%), Gaps = 18/301 (5%)

Query: 44  MASELHAKPK---YSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
            A+ L A P+    S +++D    Q+   K  DE   PAS+TKMMT +II + L   KL 
Sbjct: 34  AATVLSAPPELNNKSYVLMDYETGQILAAKNEDEKLAPASMTKMMTSFIIEQKLLQGKLT 93

Query: 100 LNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
            +  + ++++A    +   S +Y+      T  + +  +I +S ND S A  E I+G+E 
Sbjct: 94  EDEHVRMNESAWCRGSSAESCMYVPLNGTATVLEMLRGIIVQSGNDASKAMAEHIAGNEG 153

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            FA +M+ +AK++GM NT + N++G+  +   +TA+D AIL   + K+  +YY  +S ++
Sbjct: 154 TFAHMMNQEAKRLGMTNTNFVNSTGMPAEGHYSTAKDMAILAQHIIKDSSKYYPIYSEKE 213

Query: 217 FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           F +      N N LL    ++DG+KTG+T  +GF + TS +     +++V+ G P+  ER
Sbjct: 214 FTFNGIKQGNRNALLYTDPSVDGLKTGHTSEAGFCLTTSSKRGPMRLISVIFGTPSMNER 273

Query: 277 DQKALELITSFL-----------EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQF 325
             +   L+                +   K +    K++     L ++  +   K    + 
Sbjct: 274 ANQTRALLAWGFANFETANVQPANQAIAKAKVWFGKEDEVQIGLAENFNVTMPKGQADKI 333

Query: 326 K 326
           K
Sbjct: 334 K 334


>gi|184158962|ref|YP_001847301.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii ACICU]
 gi|183210556|gb|ACC57954.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii ACICU]
 gi|322508944|gb|ADX04398.1| dacC [Acinetobacter baumannii 1656-2]
 gi|323518930|gb|ADX93311.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 382

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 88/321 (27%), Positives = 156/321 (48%), Gaps = 20/321 (6%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPK---YSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           + R   +   +L  S      A+ L A P+    S +++D    Q+   K  +E   PAS
Sbjct: 1   MTRKSAIAALLLLPSFSY--AATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPAS 58

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGILALI 136
           +TKMMT YII + L   +L  N Q+ ++++A    + + S +Y+      T  + +  +I
Sbjct: 59  MTKMMTSYIIEQKLLKGELTENEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGII 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E I+G+E  FA +M+ +AK+IGM NT + N++G+  +   +TA+D A+
Sbjct: 119 IQSGNDASKAMAEHIAGNEGTFAHMMNQEAKRIGMTNTQFINSTGMPAEGHYSTAKDMAV 178

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   + K+  +YY  +S ++F +      N N LL    ++DG+KTG+T  +G+ + TS 
Sbjct: 179 LAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSS 238

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFL-----------EKKTLKHQQTHRKDNLS 305
           +     +++V+ G P+  ER  +   L+                +   K +    K+N  
Sbjct: 239 KRGPMRLISVIFGTPSMSERADQTRALLAWGFANFETANVQPANQVLAKAKVWFGKENEV 298

Query: 306 STSLKKSLMIKKLKRTYSQFK 326
              L ++  +   K      K
Sbjct: 299 QVGLAENFNVTMPKGKADGIK 319


>gi|304321771|ref|YP_003855414.1| D-alanyl-D-alanine carboxypeptidase [Parvularcula bermudensis
           HTCC2503]
 gi|303300673|gb|ADM10272.1| D-alanyl-D-alanine carboxypeptidase [Parvularcula bermudensis
           HTCC2503]
          Length = 387

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 75/272 (27%), Positives = 132/272 (48%), Gaps = 4/272 (1%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASL 80
           + I R + L   ++ L+   +S  S     P  +++++D     +   K    P  PAS+
Sbjct: 6   LSILRLLCLASVVVGLTHGTVSAQSVTTDAP--TALIMDGETGDVLFEKNARTPIPPASM 63

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           +K+MT+ +  + + + +L  +T   VS+ A     SK+++   T    ++ +  +IT S 
Sbjct: 64  SKLMTVAVALDMIATGELSADTPFSVSERAWRTGGSKMFVLVGTEIPLKELLKGIITVSG 123

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND +    E I+GS+  FA +M+ KA + G+  + + N  G+ D  Q  TA D A L   
Sbjct: 124 NDAAIVVAENIAGSDAAFADIMNRKAARWGLTGSHFANPHGIPDPEQRMTALDIAKLARH 183

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           +  ++P Y   FS+ +  + +    N N LL  +   DG+KTG+T  +GF +V S     
Sbjct: 184 IWDSYPDYRYLFSLPEMTWSDITQRNRNPLLG-LEGADGMKTGHTEEAGFGVVGSASRDG 242

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
                VV G+PTS+ R   A  L+ +     +
Sbjct: 243 VRRYIVVAGLPTSEARASTARRLLDTAFNDYS 274


>gi|169795187|ref|YP_001712980.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           (precursor) [Acinetobacter baumannii AYE]
 gi|213158149|ref|YP_002320200.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase)
           [Acinetobacter baumannii AB0057]
 gi|215482735|ref|YP_002324933.1| Penicillin-binding protein 6 precursor [Acinetobacter baumannii
           AB307-0294]
 gi|239501150|ref|ZP_04660460.1| Penicillin-binding protein 6 precursor [Acinetobacter baumannii
           AB900]
 gi|260556667|ref|ZP_05828885.1| penicillin-binding protein 6 [Acinetobacter baumannii ATCC 19606]
 gi|301346852|ref|ZP_07227593.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           [Acinetobacter baumannii AB056]
 gi|301511131|ref|ZP_07236368.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           [Acinetobacter baumannii AB058]
 gi|301596416|ref|ZP_07241424.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           [Acinetobacter baumannii AB059]
 gi|169148114|emb|CAM85977.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           (precursor) [Acinetobacter baumannii AYE]
 gi|193077945|gb|ABO12853.2| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           (precursor) [Acinetobacter baumannii ATCC 17978]
 gi|213057309|gb|ACJ42211.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase)
           [Acinetobacter baumannii AB0057]
 gi|213987778|gb|ACJ58077.1| Penicillin-binding protein 6 precursor [Acinetobacter baumannii
           AB307-0294]
 gi|260409926|gb|EEX03226.1| penicillin-binding protein 6 [Acinetobacter baumannii ATCC 19606]
          Length = 382

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 88/321 (27%), Positives = 156/321 (48%), Gaps = 20/321 (6%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPK---YSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           + R   +   +L  S      A+ L A P+    S +++D    Q+   K  +E   PAS
Sbjct: 1   MTRKSAIAALLLLPSFSY--AATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPAS 58

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGILALI 136
           +TKMMT YII + L   +L  N Q+ ++++A    + + S +Y+      T  + +  +I
Sbjct: 59  MTKMMTSYIIEQKLLKGELTENEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGII 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E I+G+E  FA +M+ +AK+IGM NT + N++G+  +   +TA+D A+
Sbjct: 119 IQSGNDASKAMAEHIAGNEGTFAHMMNQEAKRIGMTNTQFINSTGMPAEGHYSTAKDMAV 178

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   + K+  +YY  +S ++F +      N N LL    ++DG+KTG+T  +G+ + TS 
Sbjct: 179 LAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSS 238

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFL-----------EKKTLKHQQTHRKDNLS 305
           +     +++V+ G P+  ER  +   L+                +   K +    K+N  
Sbjct: 239 KRGPMRLISVIFGTPSMSERADQTRALLAWGFANFETANVQPANQVLAKAKVWFGKENEV 298

Query: 306 STSLKKSLMIKKLKRTYSQFK 326
              L ++  +   K      K
Sbjct: 299 QVGLAENFNVTMPKGKADGIK 319


>gi|259415214|ref|ZP_05739136.1| serine-type D-Ala-D-Ala carboxypeptidase [Silicibacter sp.
           TrichCH4B]
 gi|259349124|gb|EEW60878.1| serine-type D-Ala-D-Ala carboxypeptidase [Silicibacter sp.
           TrichCH4B]
          Length = 393

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 80/278 (28%), Positives = 146/278 (52%), Gaps = 11/278 (3%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPASLT 81
           I+ +    F ++  + +AS   A   +     ++ V+D   N +   K  D P  PAS++
Sbjct: 3   IRFISATCFGALAGLWLASSTTALQAFETKARAAYVVDQGTNTVLLSKNADVPMPPASMS 62

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MTLY+ FE ++  +L ++ ++PVS+ A +   S ++L        E  +  +I  S N
Sbjct: 63  KLMTLYVAFEAVRDGRLTMDERLPVSEHAMSYKGSTMFLDTTDRVRVEDLLRGIIVLSGN 122

Query: 142 DVSTAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           D      E +S  G+E  FA  M+ +A+++GM  + + N++G  D+    + RD AIL  
Sbjct: 123 DACAVIAEALSPDGTEAGFARYMTRRARELGMSESTFMNSNGWPDQGHEMSVRDLAILAE 182

Query: 200 LLRKNFPQYYKYFSIRKFRYRNR---IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
            L ++FP++Y  FS ++F +  R      N N LL      DG+KTG+T+ +G+ +V S 
Sbjct: 183 HLIEDFPEFYPMFSEQEFAFDGRAPSNTRNRNPLLQLDIGADGLKTGHTQEAGYGLVGSA 242

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
           +  D  ++ V+ GM ++ ER +++  ++     + T K
Sbjct: 243 KQGDRRVIFVISGMNSTPERAEESEAIVNWAFRQFTKK 280


>gi|168210830|ref|ZP_02636455.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens B str.
           ATCC 3626]
 gi|170711096|gb|EDT23278.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens B str.
           ATCC 3626]
          Length = 402

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 86/314 (27%), Positives = 156/314 (49%), Gaps = 15/314 (4%)

Query: 24  IQRNIQ-LMGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRY 76
           +++ I+ +    +FLS+  I  +  + A+        S+++++ +  ++   K  +E   
Sbjct: 1   MKKYIRKIAAFAIFLSLFSIVSSVPVKAEEAIEVEARSALLMEASTGKIIYEKNANEKFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +  E +   ++ L+ QI VS+TA     S + L      T E+ I  + 
Sbjct: 61  PASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGSTMLLDVGEVRTVEEIIKGIG 120

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A  E++ GSE  F  +M+ +AK++GM+NT +KN +GL  +  ++TA D +I
Sbjct: 121 IASGNDAAVAMAEYLGGSESGFVEMMNKRAKELGMKNTTFKNCTGLPIEGHLSTAYDISI 180

Query: 197 LGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +   L K  P   KY      +I + R     + NHNKL+      DG+KTG+T ++ + 
Sbjct: 181 MSRELLK-HPTILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTNDAKYC 239

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTH--RKDNLSSTSL 309
           I  +       +++V+MG PT + R++ A  L+     K   K   T     + +  +  
Sbjct: 240 ISATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGFSKFESKQVATKDGEVEQIPMSQT 299

Query: 310 KKSLMIKKLKRTYS 323
               +I K K   +
Sbjct: 300 GDKFIIGKAKDDLT 313


>gi|169632895|ref|YP_001706631.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           (precursor) [Acinetobacter baumannii SDF]
 gi|169151687|emb|CAP00477.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           (precursor) [Acinetobacter baumannii]
          Length = 382

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 88/321 (27%), Positives = 156/321 (48%), Gaps = 20/321 (6%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPK---YSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           + R   +   +L  S      A+ L A P+    S +++D    Q+   K  +E   PAS
Sbjct: 1   MTRKNAIAALLLLPSFSY--AATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPAS 58

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGILALI 136
           +TKMMT YII + L   +L  N Q+ ++++A    + + S +Y+      T  + +  +I
Sbjct: 59  MTKMMTSYIIEQKLLKGELTENEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGII 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E I+G+E  FA +M+ +AK+IGM NT + N++G+  +   +TA+D A+
Sbjct: 119 IQSGNDASKAMAEHIAGNEGTFAHMMNQEAKRIGMTNTQFINSTGMPAEGHYSTAKDMAV 178

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   + K+  +YY  +S ++F +      N N LL    ++DG+KTG+T  +G+ + TS 
Sbjct: 179 LAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSS 238

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFL-----------EKKTLKHQQTHRKDNLS 305
           +     +++V+ G P+  ER  +   L+                +   K +    K+N  
Sbjct: 239 KRGPMRLISVIFGTPSMSERADQTRALLAWGFANFETANVQPANQVLAKAKVWFGKENEV 298

Query: 306 STSLKKSLMIKKLKRTYSQFK 326
              L ++  +   K      K
Sbjct: 299 QVGLAENFNVTMPKGKADGIK 319


>gi|168215435|ref|ZP_02641060.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens NCTC
           8239]
 gi|182382426|gb|EDT79905.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens NCTC
           8239]
          Length = 402

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 86/314 (27%), Positives = 156/314 (49%), Gaps = 15/314 (4%)

Query: 24  IQRNIQ-LMGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRY 76
           +++ I+ +    +FLS+  I  +  + A+        S+++++ +  ++   K  +E   
Sbjct: 1   MKKYIRKIAAFAIFLSLFSIVSSVPVKAEEAIEVEARSALLMEASTGKIIYEKNANEKFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +  E +   ++ L+ QI VS+TA     S + L      T E+ I  + 
Sbjct: 61  PASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGSTMLLDVGEVRTVEEIIKGIG 120

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A  E++ GSE  F  +M+ +AK++GM+NT +KN +GL  +  ++TA D +I
Sbjct: 121 IASGNDAAVAMAEYLGGSESGFVEMMNKRAKELGMKNTTFKNCTGLPIEGHLSTAYDISI 180

Query: 197 LGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +   L K  P   KY      +I + R     + NHNKL+      DG+KTG+T ++ + 
Sbjct: 181 MSRELLK-HPTILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTNDAKYC 239

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTH--RKDNLSSTSL 309
           I  +       +++V+MG PT + R++ A  L+     K   K   T     + +  +  
Sbjct: 240 ISATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGFSKFESKQVATKDGEVEQIPMSQT 299

Query: 310 KKSLMIKKLKRTYS 323
               +I K K   +
Sbjct: 300 GDKFIIGKAKDDLT 313


>gi|319780264|ref|YP_004139740.1| serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317166152|gb|ADV09690.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 295

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 108/256 (42%), Positives = 162/256 (63%), Gaps = 6/256 (2%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSK 96
           S++ +   ++     KY++IV+D    +          RYPASLTKMMTLY++FE L+S 
Sbjct: 33  SVLAVPAPAQ-----KYAAIVVDARTGKQLFEVSSTAQRYPASLTKMMTLYLLFEALESG 87

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           ++   TQIPVS  AA+Q P+K+  +       +  I A++ +SANDV+ A GE++ GSE 
Sbjct: 88  RVSKQTQIPVSDHAASQPPTKMRFRRGESIDVDSAIRAIVVKSANDVAVAVGEYLGGSED 147

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
           +FA +M++KA+++GM +T ++NASGL D  Q+TTARD A+LG+ L + FPQ + YFS   
Sbjct: 148 QFAAMMTSKARQLGMTSTTFRNASGLPDDGQMTTARDMAVLGMALHQRFPQQFHYFSESD 207

Query: 217 FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           F +R R++  HN +L ++  +DGIKTGY R SGFNIVTS       ++ VVMG  ++++R
Sbjct: 208 FMFRGRLVRGHNDMLGRVRGVDGIKTGYIRASGFNIVTSYNADGRNLIVVVMGADSARQR 267

Query: 277 DQKALELITSFLEKKT 292
           +     LI   L   T
Sbjct: 268 NDHVEALIQRSLSPTT 283


>gi|169343702|ref|ZP_02864701.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens C str.
           JGS1495]
 gi|169298262|gb|EDS80352.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens C str.
           JGS1495]
          Length = 402

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 85/314 (27%), Positives = 156/314 (49%), Gaps = 15/314 (4%)

Query: 24  IQRNIQ-LMGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRY 76
           +++ I+ +    +FLS+  I  +  + A+        S+++++ +  ++   K  +E   
Sbjct: 1   MKKYIRKIAAFAIFLSLFSIVSSVPVKAEEAIEVEARSALLMEASTGKIIYEKNANEKFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +  E +   ++ L+ QI VS+TA     S + L      T E+ I  + 
Sbjct: 61  PASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGSTMLLDVGEVRTVEEIIKGIG 120

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A  E++ GSE  F  +M+ +A+++GM+NT +KN +GL  +  ++TA D +I
Sbjct: 121 IASGNDAAVAMAEYLGGSESGFVEMMNKRAEELGMKNTTFKNCTGLPIEGHLSTAYDISI 180

Query: 197 LGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +   L K  P   KY      +I + R     + NHNKL+      DG+KTG+T ++ + 
Sbjct: 181 MSRELLK-HPTILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTNDAKYC 239

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTH--RKDNLSSTSL 309
           I  +       +++V+MG PT + R++ A  L+     K   K   T     + +  +  
Sbjct: 240 ISATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGFSKFESKQVATKDIEVEQIPMSQT 299

Query: 310 KKSLMIKKLKRTYS 323
               +I K K   +
Sbjct: 300 GDKFIIGKAKDDLT 313


>gi|18310788|ref|NP_562722.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium perfringens
           str. 13]
 gi|110799537|ref|YP_696490.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens ATCC
           13124]
 gi|168214381|ref|ZP_02640006.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens CPE
           str. F4969]
 gi|18145469|dbj|BAB81512.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium perfringens
           str. 13]
 gi|110674184|gb|ABG83171.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens ATCC
           13124]
 gi|170714156|gb|EDT26338.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens CPE
           str. F4969]
          Length = 402

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 86/314 (27%), Positives = 156/314 (49%), Gaps = 15/314 (4%)

Query: 24  IQRNIQ-LMGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRY 76
           +++ I+ +    +FLS+  I  +  + A+        S+++++ +  ++   K  +E   
Sbjct: 1   MKKYIRKIAAFAIFLSLFSIVSSVPVKAEEAIEVEARSALLMEASTGKIIYEKNANEKFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +  E +   ++ L+ QI VS+TA     S + L      T E+ I  + 
Sbjct: 61  PASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGSTMLLDVGEVRTVEEIIKGIG 120

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A  E++ GSE  F  +M+ +AK++GM+NT +KN +GL  +  ++TA D +I
Sbjct: 121 IASGNDAAVAMAEYLGGSESGFVEMMNKRAKELGMKNTTFKNCTGLPIEGHLSTAYDISI 180

Query: 197 LGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +   L K  P   KY      +I + R     + NHNKL+      DG+KTG+T ++ + 
Sbjct: 181 MSRELLK-HPTILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTNDAKYC 239

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTH--RKDNLSSTSL 309
           I  +       +++V+MG PT + R++ A  L+     K   K   T     + +  +  
Sbjct: 240 ISATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGFSKFESKQVATKDGEVEQIPMSQT 299

Query: 310 KKSLMIKKLKRTYS 323
               +I K K   +
Sbjct: 300 GDKFIIGKAKDDLT 313


>gi|125975657|ref|YP_001039567.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           ATCC 27405]
 gi|125715882|gb|ABN54374.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           ATCC 27405]
          Length = 418

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 69/282 (24%), Positives = 133/282 (47%), Gaps = 13/282 (4%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++IVID +  ++   K     R  AS TK+MT  +  E       +L+ ++ VS  AA
Sbjct: 61  AKAAIVIDADTGRVLYEKDAYSRRAIASTTKIMTAIVAIE-----NGNLDDKVKVSSRAA 115

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S + LK     T ++ +  ++ RS ND + A  E + G+ + F  +M++KA+++G+
Sbjct: 116 SIWGSTIKLKPGEELTLKELLYGMMLRSGNDAALAVAEHVGGTVENFVKMMNDKARELGL 175

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT +K   GL  +   +TA + A+L     +N P + +  + +     NR +   N++L
Sbjct: 176 KNTAFKTPHGLDVEGHYSTAYELAMLTRYALQN-PVFAQIVATKSTTITNRSLYTTNEML 234

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
           +     DG+KTGYT  +G  +VTS       I++VV+   +  +R + +  ++       
Sbjct: 235 SLYPGADGVKTGYTGKAGRCLVTSATRDGFKIISVVLNCSSRSKRAESSKAILDYAFNNY 294

Query: 292 TLKH--QQTHRKDNLSSTSLKKS----LMIKKLKRTYSQFKK 327
                 +       +     KK     + ++ +K   S+ +K
Sbjct: 295 KPYELLRANQELGRVKVYKGKKDSVPVVAVESIKMPLSREEK 336


>gi|187932841|ref|YP_001886556.1| penicillin-binding protein DacF [Clostridium botulinum B str.
           Eklund 17B]
 gi|187720994|gb|ACD22215.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum B
           str. Eklund 17B]
          Length = 396

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 86/321 (26%), Positives = 155/321 (48%), Gaps = 24/321 (7%)

Query: 24  IQRNIQLMGKILFLSIIMISMAS--------ELHAKP----KYSSIVIDVNKNQMTGFKQ 71
           I+R I     I  L+II+I + +        E+ A        S+++I+    ++   K 
Sbjct: 5   IKRIISF-TLIFVLTIILIPIGAVNASMLEDEVKADGMNVEAKSALLIEPTTGKVVYEKN 63

Query: 72  -DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
            DE   PAS+TK+MT+ +  E + + K+ L+ ++  S+ A     S + L      + E+
Sbjct: 64  PDEKFAPASVTKIMTMLLTMEAIDNGKIKLDDKVTCSENAKKMGGSTMLLDTGEIRSVEE 123

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  +   S ND + A  E++ G+E  F  LM+ +A+++GM+NT++KN +GL     ++T
Sbjct: 124 LLKGVAIASGNDAAVALAEYLGGTESDFVGLMNKRAQELGMKNTVFKNCNGLPADGHLST 183

Query: 191 ARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
           ARD +++ I L K  P   KY      SI + R     + NHNKL+      DG+KTG+T
Sbjct: 184 ARDISLMSIELLK-HPTILKYTGTYMDSISEGRKSPIELVNHNKLVRFFEGCDGLKTGFT 242

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLS 305
             + + I  +       ++ V+MG PT + R++ A  L+     K     +   + +++ 
Sbjct: 243 NEAKYCISATATRNGVRMLTVIMGAPTYKIRNRDAGILLNHGFSKYE-GKKIVSKDEDVE 301

Query: 306 STSLKKS---LMIKKLKRTYS 323
              + K      + K K   +
Sbjct: 302 KVLMDKQTDRFFMAKAKDDLT 322


>gi|291539061|emb|CBL12172.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis XB6B4]
          Length = 348

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 79/264 (29%), Positives = 132/264 (50%), Gaps = 11/264 (4%)

Query: 59  IDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ++     +   K   E R+PAS+TK+MTL +IF+ L SK++ L+  + VS+ AA+   S+
Sbjct: 1   MEAFTGAVVYEKNPHEARHPASVTKIMTLLLIFDALSSKQISLDDTVTVSEYAASIGGSQ 60

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           ++L+     T E  I  +   SAND   A  E ++GSE +F  +M+ +AK +GM +T + 
Sbjct: 61  VFLEPGETQTVETMIKCISVASANDACVAMAEHVAGSESEFVRMMNERAKGLGMNDTNFV 120

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--------ITNHNK 229
           N  GL     +T+A D A++   L   +P+ + Y +I      +          +TN NK
Sbjct: 121 NCCGLDADGHMTSANDIALMSRELITKYPKIHDYCTIWMENITHTTAKGSSEFGLTNTNK 180

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           L+       G+KTG+T  + + I  + +  D  ++AV+MG P  + R   A  L+     
Sbjct: 181 LIKHYQYATGLKTGFTNTAMYCISATAKKDDMELIAVIMGAPDIKSRSADATTLLNYGFG 240

Query: 290 KKTLKHQQTHRKDNLSSTSLKKSL 313
           K  +       +D L    +KK L
Sbjct: 241 KCRIYCDS--HEDKLDDLPVKKGL 262


>gi|260428585|ref|ZP_05782564.1| D-alanyl-D-alanine carboxypeptidase DacC [Citreicella sp. SE45]
 gi|260423077|gb|EEX16328.1| D-alanyl-D-alanine carboxypeptidase DacC [Citreicella sp. SE45]
          Length = 392

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 76/279 (27%), Positives = 145/279 (51%), Gaps = 11/279 (3%)

Query: 31  MGKILFLSIIMISMASELHA--KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLY 87
           + ++L  +  +  +A++  A      ++ V+D     +   K  DE   PAS++K+MTLY
Sbjct: 7   LRRLLAAASTLAVLATQAGAFDTSARAAFVLDYTTGTVLMAKNADEAMPPASMSKLMTLY 66

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + FE +   +L L+ ++PVS+ A +   S ++L  +     E  +  +I  S ND     
Sbjct: 67  MAFEAIHDGRLTLDERLPVSEHAMSYGGSTMFLNTQDRVRVEDLLRGIIVLSGNDACAVI 126

Query: 148 GEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
            E +S  G+E  FA LM+ +A+++GM N+ + NASG    N   + RD  +L   + ++F
Sbjct: 127 AEALSPNGTEPGFAELMTRRAQQLGMTNSTFANASGWPAANHRMSMRDLTLLATRIIEDF 186

Query: 206 PQYYKYFSIRKFRYRNR---IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           P++Y  F+ ++F +  R    + N N LL      DG+KTG+T  +G+ +V S +  +  
Sbjct: 187 PEFYPIFAEKQFAFDGRAPSNVNNRNPLLRLNIGADGLKTGHTAEAGYGLVGSAKQGERR 246

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEK---KTLKHQQT 298
           +V  + G+ + + R +++  ++     +   +TL  + T
Sbjct: 247 VVFAMTGLDSERARAEESESIVNWAFRQFAERTLVKKGT 285


>gi|254465451|ref|ZP_05078862.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacterales bacterium Y4I]
 gi|206686359|gb|EDZ46841.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacterales bacterium Y4I]
          Length = 389

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 76/272 (27%), Positives = 134/272 (49%), Gaps = 9/272 (3%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
            +        ++ V+D   + +   K  D P  PAS++K+MTLY+ FE L+  +L L+ +
Sbjct: 21  PAAAFDTSARAAYVVDAGTDTVLLSKNSDVPLPPASMSKLMTLYVAFEALRDGRLTLDER 80

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAIL 161
           +PVS+ A +   S ++L        E  +  +I  S ND      E +S  G+E  FA  
Sbjct: 81  LPVSEHAMSYGGSTMFLDTTDRVRVEDLLRGIIVLSGNDACVVIAEALSPDGTEAGFARY 140

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           M+ +A+ +GM  + + N++G        +  D A+L   L ++FP+YY  F+   F +  
Sbjct: 141 MTKRAEDMGMTASTFANSNGWPAAGHRMSVHDLAVLAERLIEDFPEYYPLFAETTFEFDG 200

Query: 222 R---IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           R    I N N LL      DG+KTG+T  +G+ +V S    D  ++ VV G+ T + R +
Sbjct: 201 RAPSNIRNRNPLLRLGIGADGLKTGHTEEAGYGLVGSATQGDRRVIFVVSGLDTERGRAE 260

Query: 279 KALELITSFLEKKTLKHQQTHRKDNLSSTSLK 310
           +A  ++     + T   ++T  K+ ++    +
Sbjct: 261 EAEAIVNWSFRQFT---KKTVAKEGIAIAEAE 289


>gi|256061158|ref|ZP_05451311.1| D-alanyl-D-alanine carboxypeptidase [Brucella neotomae 5K33]
 gi|261325163|ref|ZP_05964360.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
 gi|261301143|gb|EEY04640.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
          Length = 410

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 103/264 (39%), Positives = 160/264 (60%), Gaps = 6/264 (2%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMM 84
           R  +    + F + ++ +      A    S +V D +  +M G         PASL KMM
Sbjct: 20  RISRFFASVAFGTAVLCASG----AMASTSWVVFDADSGRMLGRDDASAQHAPASLAKMM 75

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TLY+ FE L++ +LH +  +P+SK AA++   KL+LK     +T   +  +I  SAND +
Sbjct: 76  TLYLTFEALKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAA 135

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-NQITTARDQAILGILLRK 203
           T  GE+++GSE  FA LM+ +A++IGM++TI+ N SGL    +Q+TTARD A+LG+ LR+
Sbjct: 136 TVMGEYLAGSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRR 195

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           +FP+ Y  FS R F +R R+   HN L+ +   +DGIKTGYT  SG+N+V+S    +  +
Sbjct: 196 DFPEEYALFSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHL 255

Query: 264 VAVVMGMPTSQERDQKALELITSF 287
           V VV+G  ++ +RD +  +L+T F
Sbjct: 256 VGVVLGAGSAGQRDGQMAKLLTRF 279


>gi|218133227|ref|ZP_03462031.1| hypothetical protein BACPEC_01091 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992100|gb|EEC58104.1| hypothetical protein BACPEC_01091 [Bacteroides pectinophilus ATCC
           43243]
          Length = 400

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 85/289 (29%), Positives = 135/289 (46%), Gaps = 24/289 (8%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELH---------AKPKY---SSIVIDVNKNQMTG 68
           S  +QR I     IL   I+ +  A  +          A+P     S I+++ +  +   
Sbjct: 5   SFMLQRRI---AGILLTVIVAVLAAVPVQSMCMYRVNAAEPDVESPSVILMEASTGKTVY 61

Query: 69  FKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
            K  DE  +PAS+TK+MTL +IF+ L   K+ L   + VS+ AA+   S+++L+     T
Sbjct: 62  EKNADETLHPASITKIMTLILIFDALSENKITLEENVTVSEHAASMGGSQVFLEAGEKQT 121

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
               I  +   SAND S A  E I GSE+ F   M+ +A+ +GM  T + N  GL     
Sbjct: 122 VNTMIKCISVASANDASVAMAEHIWGSEQTFVDKMNERAQGLGMSGTHFVNCCGLDTDGH 181

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--------ITNHNKLLNKMHNIDG 239
           + TARD AI+   L   +PQ ++Y  I      +          ++N NKL+ +     G
Sbjct: 182 MMTARDVAIMSRELITRYPQIHEYSGIWMDTITHNTRRGESEFGLSNTNKLIKQYEWATG 241

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +KTG T  +   +  +       ++AVVM  P S+ R + A+ L+    
Sbjct: 242 LKTGSTGLAKCCLSATAEKDGIELIAVVMAAPNSKTRFKDAISLLNYGY 290


>gi|312113134|ref|YP_004010730.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311218263|gb|ADP69631.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 584

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 99/310 (31%), Positives = 177/310 (57%), Gaps = 7/310 (2%)

Query: 31  MGKILFLSIIMISMAS--ELHAKP---KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMM 84
           M  +  L++   + A     HA+      S++V+D +  ++   +   +PR+PAS+TK+M
Sbjct: 1   MAALFLLAVSSPAEARRRASHAQSYSTASSAMVVDFHTGRILISRNATDPRFPASVTKVM 60

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TLY++F+ L+  KL++NT++ VS  AA+Q+P+KL L      T    I A++T+SAND++
Sbjct: 61  TLYLLFDALRDGKLNMNTKLRVSAYAASQSPTKLGLDAGDTITVSDVIGAIVTKSANDMA 120

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
               E ++GSE++FA  M+ KA+ IGM NT ++NASGL +  Q TTA+D  IL   +  +
Sbjct: 121 VVVAEALAGSEEEFARRMTQKARTIGMLNTTFRNASGLPNSEQRTTAQDLVILARSVITD 180

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
            P+  + FS + F+Y   I  NHN +L     ++G+KTG+T  SGFN++ + R  +  ++
Sbjct: 181 HPERSRVFSTKYFQYDGEIYRNHNTMLFSYEGMEGMKTGFTSASGFNLLATARRGEKRLI 240

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
           AVV+G  +++ R+     ++ +   K  +      +   L S+   K       ++  + 
Sbjct: 241 AVVLGGSSARVRNAAMRNILDASWSKA-MTLTAAKKAGALVSSFAPKQFAQAAPEKPSAA 299

Query: 325 FKKIDAKAHS 334
            +K +++A +
Sbjct: 300 DRKSESRATA 309


>gi|23501950|ref|NP_698077.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330]
 gi|161619022|ref|YP_001592909.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC
           23365]
 gi|254704362|ref|ZP_05166190.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
           686]
 gi|260566392|ref|ZP_05836862.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40]
 gi|261755034|ref|ZP_05998743.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
           686]
 gi|23347896|gb|AAN29992.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330]
 gi|161335833|gb|ABX62138.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC
           23365]
 gi|260155910|gb|EEW90990.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40]
 gi|261744787|gb|EEY32713.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
           686]
          Length = 410

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 103/264 (39%), Positives = 161/264 (60%), Gaps = 6/264 (2%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMM 84
           R  +    ++F + ++ +      A    S +V D +  +M G         PASL KMM
Sbjct: 20  RISRFFASVVFGTAVLCASG----AMASTSWVVFDADSGRMLGQDDASAQHAPASLAKMM 75

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TLY+ FE L++ +LH +  +P+SK AA++   KL+LK     +T   +  +I  SAND +
Sbjct: 76  TLYLTFEALKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAA 135

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-NQITTARDQAILGILLRK 203
           T  GE+++GSE  FA LM+ +A++IGM++TI+ N SGL    +Q+TTARD A+LG+ LR+
Sbjct: 136 TVMGEYLAGSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRR 195

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           +FP+ Y  FS R F +R R+   HN L+ +   +DGIKTGYT  SG+N+V+S    +  +
Sbjct: 196 DFPEEYALFSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHL 255

Query: 264 VAVVMGMPTSQERDQKALELITSF 287
           V VV+G  ++ +RD +  +L+T F
Sbjct: 256 VGVVLGAGSAGQRDGQKAKLLTRF 279


>gi|157828411|ref|YP_001494653.1| penicillin-binding protein dacF precursor [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|157800892|gb|ABV76145.1| penicillin-binding protein dacF precursor [Rickettsia rickettsii
           str. 'Sheila Smith']
          Length = 306

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 99/278 (35%), Positives = 157/278 (56%), Gaps = 7/278 (2%)

Query: 30  LMGKILFLSIIMISMASELHA------KPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTK 82
           L+  I  ++     ++    A       P  +S+VID    ++      + R YPASLTK
Sbjct: 6   LLPYIFVVTFFFAPISEAKKAVRNTPKPPVQTSLVIDAKSGKVLQAHNSQIRIYPASLTK 65

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MTLY++FE +++ KL L+ ++ VS  AA   P KL LK     T  + I  LI +SAND
Sbjct: 66  LMTLYLMFEAIEAGKLPLDKKLLVSAKAAKMPPCKLGLKAGETITVREAINGLIIKSAND 125

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            +    E + GSEK FA LM+ KAK++GM+NT +KNASG HD  Q TTARD A L + L+
Sbjct: 126 AAVTVAEGMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHDPLQQTTARDIAKLAMALK 185

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           +++P++Y  F+   F +R  ++  HN++       +G+KTG+   +G+N+VT+       
Sbjct: 186 RDYPKFYPLFAKTSFVFRGNVVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKS 245

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           ++AVV G  +++ RDQK + L+      K +  +   +
Sbjct: 246 LIAVVTGGKSAESRDQKMMGLLDQHFNIKPIVSKPAIK 283


>gi|163733947|ref|ZP_02141389.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter
           litoralis Och 149]
 gi|161393058|gb|EDQ17385.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter
           litoralis Och 149]
          Length = 511

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 96/262 (36%), Positives = 148/262 (56%), Gaps = 2/262 (0%)

Query: 32  GKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIF 90
           G   F  + M+ +     A   Y++ V+D    ++   +  D   +PASLTKMMTLYI F
Sbjct: 36  GLYAFAVLWMLVILPLSAAAAPYAAFVMDARTGEVLHSRNADTRLHPASLTKMMTLYIAF 95

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           + +++ ++ L+T++ +S+ AA++ PSKL LK          I A   +SAND +TA GE 
Sbjct: 96  QAVENGEISLDTKVKISRFAASEPPSKLGLKSGQRIAFRYLIRAAAIKSANDAATAIGEA 155

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           + GSE  FA  M+  AK++GM  T +KNA GL +   ++TARD ++LG  +  ++P+YY 
Sbjct: 156 LEGSEAAFARRMTRTAKELGMTRTTFKNAHGLTESGHMSTARDMSLLGRHVLYDYPEYYN 215

Query: 211 YFSIRKFRYRNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            FS R      R + N N +LL      DGIKTGYTR +GFN+V S     + I+A V G
Sbjct: 216 LFSRRSTHAGVRDVANTNRRLLAAYRGADGIKTGYTRAAGFNLVASAERGQERIIATVFG 275

Query: 270 MPTSQERDQKALELITSFLEKK 291
             ++  R+ +  EL+    ++ 
Sbjct: 276 GTSTIARNARVAELLDMGFKRA 297


>gi|84685216|ref|ZP_01013115.1| D-alanyl-D-alanine carboxypeptidase family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666948|gb|EAQ13419.1| D-alanyl-D-alanine carboxypeptidase family protein [Rhodobacterales
           bacterium HTCC2654]
          Length = 534

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 129/236 (54%), Gaps = 2/236 (0%)

Query: 58  VIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           V+D    Q+   +  D   +PASLTKMMTLYI+FE ++  ++ L++ + +S+ A+ + PS
Sbjct: 19  VVDARSGQVLHERNADARLHPASLTKMMTLYIVFEAVEHGEISLDSLVTISRNASAEPPS 78

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
           K+  +E +       I A   +SAND +TA GE ISGSE+ FA  M+  AK +GM  T +
Sbjct: 79  KIGFREGSQVRLRHLIRAAAVKSANDAATALGEAISGSEEAFAARMNRTAKALGMTRTHF 138

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN-KLLNKMH 235
           +N  GL  +  ++TARD   LG  L  ++PQYY  FS        + + + N + L    
Sbjct: 139 ENMHGLTAEGHLSTARDMTTLGRHLFYDYPQYYNLFSRTSADVGVKTVPSTNRRFLTTYE 198

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
             DGIKTGYTR SG N+  S    +  I+A + G  +   RD +  EL+     + 
Sbjct: 199 GADGIKTGYTRASGSNLTASAHRGNKRIIATIFGGTSGPSRDAQMAELLDMGFRQA 254


>gi|297180929|gb|ADI17133.1| d-alanyl-d-alanine carboxypeptidase [uncultured gamma
           proteobacterium HF0070_03O15]
          Length = 370

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 87/284 (30%), Positives = 151/284 (53%), Gaps = 12/284 (4%)

Query: 39  IIMISMASELHAKPKY---SSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQ 94
           ++ I++++ +   P     S I+ + N  ++      D P  PASLTK+MT Y++ +Y++
Sbjct: 1   MLSINLSAAIPNPPDLGVGSYILYEPNTKKVLASFNADAPVEPASLTKLMTSYVVADYIK 60

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
              + L     +S  A     S+++++E T     + I  +I +S ND S A  E ++GS
Sbjct: 61  EDFIDLTDTPKISINAWKTPGSRMFIRESTKVPVSELIKGMIIQSGNDASVALAEHVAGS 120

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           E+ F+ LM+  A+++GM+NT + NASGL D   +T+A D A+L   L KNFP +Y+++S 
Sbjct: 121 EENFSYLMNEYARELGMENTSFNNASGLPDPLNVTSANDLAVLTGELIKNFPDHYRHYSQ 180

Query: 215 RKFRYRNRIITNHNKLLNKMH---NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           + F Y      N N+LL + +     DG+KTGYT ++G+ +V S       +VAVV+G  
Sbjct: 181 KSFTYAGIAQKNRNQLLWRDNTSITFDGVKTGYTESAGYCLVGSAVKDGMRLVAVVLGSE 240

Query: 272 TSQERDQKALELI---TSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
             + R      L+     + + + L  +    K ++   + KK 
Sbjct: 241 DDK-RFNDVSNLMVYGFRYFKTEKLFEKNEPLK-SVQVIAGKKD 282


>gi|299133891|ref|ZP_07027085.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2]
 gi|298591727|gb|EFI51928.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2]
          Length = 408

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 72/284 (25%), Positives = 131/284 (46%), Gaps = 19/284 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++I+ID     +   K  DE R P+S+ K+MT  +IF  L   ++ L  +  +S+ A 
Sbjct: 48  APTAILIDAKTGSVLFEKNADELRAPSSMMKLMTAEVIFHALAKGEIKLTDEYRISENAW 107

Query: 112 TQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
            +       S ++    +  + +  +  L+ +S ND   A  E  +GSE  F   M  +A
Sbjct: 108 RKGGAPSGSSTMFAAIHSQVSIDDLLHGLVIQSGNDSCIALAEGYAGSEDAFVNRMQARA 167

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
           K++G+  + + N +GL + +   + R+ A L   +   +P +YK F  R+F +      N
Sbjct: 168 KELGLTRSTFGNTNGLPNPDNKMSVRELAHLTRHIILTYPDFYKLFGEREFTWNKIRQMN 227

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            N LL  +   DG+KTGYT+  G+ +V S       ++ VV G+  S +R   A +L+  
Sbjct: 228 RNPLLGSLDGADGLKTGYTKEGGYGMVGSAVQNGTRLIVVVNGLEDSGDRAAAAKKLLEW 287

Query: 287 FLEK----------KTLKHQQTHRKDNLSS---TSLKKSLMIKK 317
             +           +T+ + +    D+ S         S+M++K
Sbjct: 288 GFKNFESRTLFDAGQTIAYGKVFGGDSGSVELHADEPVSVMVQK 331


>gi|303238725|ref|ZP_07325258.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio
           cellulolyticus CD2]
 gi|302593844|gb|EFL63559.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio
           cellulolyticus CD2]
          Length = 399

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 71/279 (25%), Positives = 131/279 (46%), Gaps = 8/279 (2%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL 93
           +F + +  +  S+       ++IVID+   ++   K     R  AS TK+MT  +  E  
Sbjct: 36  IFSTEVSNAAGSKTPKIEAGAAIVIDMKSGRVLYEKNAYSTRSIASTTKIMTAIVAIE-- 93

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
              K  L+ ++ VSK AA+   S ++LKE    +  + +  L+  S ND + A  E I G
Sbjct: 94  ---KGKLDNKVKVSKRAASVRGSVIHLKEGEELSLRELLYGLMLNSGNDAAIAIAEHIGG 150

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S ++FA +M++KA+++G++NT +K   GL      +TA + A +      N   + +   
Sbjct: 151 SVEEFAQMMNDKARELGLKNTQFKTPHGLDTPGHYSTAYELAQIARYALGNS-TFSQIVG 209

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            +      R +   N++L      DG+KTGYT  +G  +V S    +  I++VV+   + 
Sbjct: 210 TQSTSITGRSLYTTNEMLGAYPGADGVKTGYTGQAGRCLVASATRNNMRIISVVLNCHSR 269

Query: 274 QERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
             R Q +  ++        L ++    ++N+    + K 
Sbjct: 270 SVRAQSSKAILDYAFNNYKL-YKLLDSEENVGKLPVVKG 307


>gi|114762661|ref|ZP_01442095.1| D-alanyl-D-alanine carboxypeptidase [Pelagibaca bermudensis
           HTCC2601]
 gi|114544571|gb|EAU47577.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius sp. HTCC2601]
          Length = 391

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 75/262 (28%), Positives = 135/262 (51%), Gaps = 9/262 (3%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +        ++ V+D     +   K  DE   PAS++K+MTLY+ FE ++  +L L+ ++
Sbjct: 24  AGAFDTSARAAFVLDYTTGTVLMAKNADEALPPASMSKLMTLYMAFEAVRDGRLQLDERL 83

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILM 162
           PVS+ A +   S ++L        E  +  +I  S ND      E +S  G+E  FA LM
Sbjct: 84  PVSQHAMSYGGSTMFLNTTDRVAVEDLLRGIIVLSGNDACAVIAEALSPNGTEAGFAELM 143

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
           + +A+++GM N+ ++NASG    N   + RD  +L   + ++FP++Y  F+ R+F +  R
Sbjct: 144 TRRAQQLGMTNSTFENASGWPAPNHRMSVRDLTLLATRIIEDFPEFYPIFAERRFEFDGR 203

Query: 223 ---IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
               + N N LL      DG+KTG+T+ +G+ +V S       ++  + G+ + + R ++
Sbjct: 204 APSNVNNRNPLLRLDIGADGLKTGHTQEAGYGLVGSAEQDGRRVIFTISGLDSERARAEE 263

Query: 280 ALELITSFLEK---KTLKHQQT 298
           A  ++     +   +TL  Q T
Sbjct: 264 AESIVNWAFRQFAERTLVEQGT 285


>gi|163843338|ref|YP_001627742.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445]
 gi|163674061|gb|ABY38172.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445]
          Length = 410

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 103/264 (39%), Positives = 161/264 (60%), Gaps = 6/264 (2%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMM 84
           R  +    ++F + ++ +      A    S +V D +  +M G         PASL KMM
Sbjct: 20  RISRFFASVVFGTAVLCASG----AMASTSWVVFDADSGRMLGQDDASAQHAPASLAKMM 75

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TLY+ FE L++ +LH +  +P+SK AA++   KL+LK     +T   +  +I  SAND +
Sbjct: 76  TLYLTFEALKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAA 135

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-NQITTARDQAILGILLRK 203
           T  GE+++GSE  FA LM+ +A++IGM++TI+ N SGL    +Q+TTARD A+LG+ LR+
Sbjct: 136 TVMGEYLAGSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRR 195

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           +FP+ Y  FS R F +R R+   HN L+ +   +DGIKTGYT  SG+N+V+S    +  +
Sbjct: 196 DFPEEYALFSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHL 255

Query: 264 VAVVMGMPTSQERDQKALELITSF 287
           V VV+G  ++ +RD +  +L+T F
Sbjct: 256 VGVVLGAGSAGQRDGQKAKLLTRF 279


>gi|281416665|ref|ZP_06247685.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           JW20]
 gi|281408067|gb|EFB38325.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           JW20]
          Length = 396

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 69/282 (24%), Positives = 132/282 (46%), Gaps = 13/282 (4%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++IVID +  ++   K     R  AS TK+MT  +  E       +L+ ++ VS  AA
Sbjct: 39  AKAAIVIDADTGRVLYEKDAYSRRAIASTTKIMTAIVAIE-----NGNLDDKVKVSSRAA 93

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S + LK     T  + +  ++ RS ND + A  E + G+ + F  +M++KA+++G+
Sbjct: 94  SIWGSTIKLKPGEELTLRELLYGMMLRSGNDAALAVAEHVGGTVENFVKMMNDKARELGL 153

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT +K   GL  +   +TA + A+L     +N P + +  + +     NR +   N++L
Sbjct: 154 KNTAFKTPHGLDVEGHYSTAYELAMLTRYALQN-PVFAQIVATKSTTITNRSLYTTNEML 212

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
           +     DG+KTGYT  +G  +VTS       I++VV+   +  +R + +  ++       
Sbjct: 213 SLYPGADGVKTGYTGKAGRCLVTSATRDGFKIISVVLNCSSRSKRAESSKTILDYAFNNY 272

Query: 292 TLKH--QQTHRKDNLSSTSLKKS----LMIKKLKRTYSQFKK 327
                 +       +     KK     + ++ +K   S+ +K
Sbjct: 273 KPYELLRANQELGRVKVYKGKKDSVPVVAVESIKMPLSREEK 314


>gi|225174857|ref|ZP_03728854.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
           AHT 1]
 gi|225169497|gb|EEG78294.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
           AHT 1]
          Length = 389

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 77/286 (26%), Positives = 142/286 (49%), Gaps = 19/286 (6%)

Query: 45  ASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           A    A P++     + +++DV   ++       E  YPAS+TK+MT+ +  E L+  K+
Sbjct: 19  AGTAAAAPEFEFSSKAQLLMDVGSGEVLYENNIHEQLYPASVTKIMTMLLAMEALEEGKV 78

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
             +  +PVS+ AA    S+++L      T E  ++ +   SAND S A  EF++GS   F
Sbjct: 79  KPDDLVPVSEAAAAHGGSQIFLSPGDRITFEDLMIGIGVGSANDGSWAMAEFLAGSADAF 138

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF- 217
              M+ KA+++GM NT + N  GLHD+N  TTA D A++   L + +P+ +++ +I    
Sbjct: 139 VTQMNEKARELGMNNTNFMNPHGLHDENHYTTAYDIALMSRELLR-YPKIHEWITIWMDE 197

Query: 218 --------RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
                   +     ++N N+++      DG+KTG+T  +G  +  + +  D   +AV++G
Sbjct: 198 EFLKGKIQKEEGVYLSNANRIVRYYDGGDGLKTGFTSEAGNCVSATAKRGDTRFMAVILG 257

Query: 270 MPTSQERDQKALELITSFL-EKKTLKHQQTHRKDNLSSTSLKKSLM 314
            P       +A  L+       K++   Q  + +   +  + K ++
Sbjct: 258 APGRPALFDEAKTLLDYGFANYKSVPIAQ--KGEVFGTVMVDKGVI 301


>gi|163814026|ref|ZP_02205418.1| hypothetical protein COPEUT_00178 [Coprococcus eutactus ATCC 27759]
 gi|158450475|gb|EDP27470.1| hypothetical protein COPEUT_00178 [Coprococcus eutactus ATCC 27759]
          Length = 417

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 80/283 (28%), Positives = 128/283 (45%), Gaps = 17/283 (6%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+++    Q+   K  D    PAS+TK+MTL + FE +   K  L+  + VS  AA+ 
Sbjct: 66  SAILMEAESGQVIYEKNCDTAMAPASVTKVMTLLLTFEAIDDGKFSLDDTVVVSDHAASM 125

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+ + +     T +  I  +I  S ND + A  E I+GSE  F  +M+ +AK++GM+N
Sbjct: 126 GGSQCFFESGEEQTVQDMIKCIIIASGNDAAVAMAEKIAGSEPAFVNMMNERAKELGMEN 185

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--------IT 225
             +KNA GL       +ARD A++   L     + + Y  I      ++         + 
Sbjct: 186 ASFKNACGLDTSGHEMSARDIALMSRELITKHSEIFDYSGIWMDHITHKTARGDSRFDLV 245

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N NK LN      G+KTGYT  + + +  +       ++AV+MG  T + R+  A  L+ 
Sbjct: 246 NTNKFLNMYTGATGLKTGYTSTAKYCMSATAERDGIDLIAVIMGGETKEMRNNDACHLLD 305

Query: 286 SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
               K      +   K+        K L + K    Y   K I
Sbjct: 306 YGYSKCHKYTDKEIIKE--------KKLSVDKGTSDYVTIKTI 340


>gi|188588716|ref|YP_001921477.1| penicillin-binding protein DacF [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498997|gb|ACD52133.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum E3
           str. Alaska E43]
          Length = 396

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 96/345 (27%), Positives = 167/345 (48%), Gaps = 47/345 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMAS--------ELHAKP----KYSSIVIDVNKNQMTGFKQ 71
           I+R I     I  L+II+I + +        E+ A+       S+++I+    ++   K 
Sbjct: 5   IKRIISF-TLIFVLTIILIPIGAVNASMLEDEVKAEGMNVEAKSALLIEPTTGKVVYEKN 63

Query: 72  -DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
            DE   PAS+TK+MT+ +  E + + K+ L+ ++  S+ A     S + L      + E+
Sbjct: 64  PDEKFAPASVTKIMTMLLTMEAVDNGKIKLDDKVTCSENAKKMGGSTMLLDTGEIRSVEE 123

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  +   S ND + A  E++ G+E  F  LM+ +A+++GM+NT++KN +GL     ++T
Sbjct: 124 LLKGVAIASGNDAAVALAEYLGGTESDFVGLMNKRAQELGMKNTVFKNCNGLPADGHLST 183

Query: 191 ARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
           ARD +++ I L K  P   KY      SI + R     + NHNKL+      DG+KTG+T
Sbjct: 184 ARDISLMSIELLK-HPTILKYTGTYMDSISEGRKSPIELVNHNKLVRFFEGCDGLKTGFT 242

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK--------------K 291
             + + I  +       ++ V+MG PT + R++ A  L+     K              K
Sbjct: 243 NEAKYCISATATRNGVRMLTVIMGAPTYKIRNRDAGILLNHGFSKYEGKKIVSKDEDVEK 302

Query: 292 TLKHQQTHR------KDNLSST-------SLKKSLMIKKLKRTYS 323
            L  +QT R      KD+L++         + K ++I++LK  Y 
Sbjct: 303 VLMDKQTDRFFMAKAKDDLTAILPKGSNGEISKKIVIEELKPEYK 347


>gi|163760149|ref|ZP_02167232.1| penicillin binding protein [Hoeflea phototrophica DFL-43]
 gi|162282548|gb|EDQ32836.1| penicillin binding protein [Hoeflea phototrophica DFL-43]
          Length = 394

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 79/301 (26%), Positives = 146/301 (48%), Gaps = 14/301 (4%)

Query: 15  LTYPYGSIYIQR----NIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK 70
           +  P G I++ R     +     +LF        A     + + + ++ D +   +   K
Sbjct: 1   MHIPDGWIFMFRPLSSRLFFAFLVLFAGFTGAVRAQLFETRAEQAYML-DADTGTVLFSK 59

Query: 71  Q-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKT 124
             ++   PASL K+MT+ ++F  ++S +L L+    VS+ A          S ++ +  +
Sbjct: 60  NENDLVPPASLAKLMTMEVVFNAIRSGRLTLDDTFQVSENAWRTGGAISRTSTMFAELNS 119

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
               E  I  +I +SAND      E ++GSE  F+ LMS +A+ IG+  +++ N+SGL  
Sbjct: 120 SIRLEDLIQGVIVQSANDGCIIIAEGMAGSEDNFSRLMSERARDIGLTQSVFANSSGLPH 179

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGY 244
            +   + +D   L   +   +P++Y+Y+S  +F + N    N N LLN    +DG+KTG+
Sbjct: 180 PHSKVSMKDLVTLARHIHATYPEFYRYYSQPEFTWNNIRQRNRNPLLNLDIGVDGLKTGF 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF---LEKKTLKHQQTHRK 301
           T  SG+ IV S+R     +   + G+ + +ER ++A +++       E+KTL        
Sbjct: 240 TEESGYGIVASIRRDGRRLFVAMSGLSSERERAEEARKMLEWGVRAFERKTLFAADEIIG 299

Query: 302 D 302
           +
Sbjct: 300 E 300


>gi|148255490|ref|YP_001240075.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [Bradyrhizobium
           sp. BTAi1]
 gi|146407663|gb|ABQ36169.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [Bradyrhizobium
           sp. BTAi1]
          Length = 384

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 129/251 (51%), Gaps = 10/251 (3%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++I+++ N   +   K  DE R P+S+ K+MT  ++F  ++   + LN +  +S+ A 
Sbjct: 23  APTAILMEANSGSVLFEKNADELRAPSSMMKLMTAEVVFNAVKEGTIKLNDEYRISENAW 82

Query: 112 TQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA-ILMSNK 165
            +       S ++    +  +    +   I +S ND   A  E ++G+EK FA   M+ +
Sbjct: 83  RRGGAPSGGSTMFAALNSKVSVSDLLHGAIIQSGNDACIALAEGMAGNEKIFAADYMTKR 142

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
           A+++G+  + + N++GL D     T R+ A+L   +  +FP++YK F  ++F +      
Sbjct: 143 ARELGLTKSTFANSNGLPDPGNKMTVRELAMLARHIILDFPEFYKIFGEKEFTWNKIRQQ 202

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N N LLN M   DG+KTG+T+  G+ +V S       ++ VV G+   ++R  +A +++ 
Sbjct: 203 NRNPLLNAMEGADGLKTGFTKEGGYGMVGSAVQNGTRLIVVVNGLEDPEDRATEAKKMLE 262

Query: 286 SF---LEKKTL 293
                 E +TL
Sbjct: 263 WGFRNFETRTL 273


>gi|296447596|ref|ZP_06889517.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus
           trichosporium OB3b]
 gi|296254911|gb|EFH02017.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus
           trichosporium OB3b]
          Length = 448

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 82/234 (35%), Positives = 135/234 (57%), Gaps = 1/234 (0%)

Query: 56  SIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           S+VIDV   Q+   +Q     YPASLTK+MT+Y+  + ++S +L  +T + VS  A +  
Sbjct: 27  SVVIDVASGQILEQEQPTQSWYPASLTKLMTVYVALDAVRSGRLSYDTPLVVSPRATSMA 86

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           PSK+     +  T    ++ L+ +SANDV+    E +SGS + FA  M+  + ++GM+ +
Sbjct: 87  PSKMGFPPGSEVTLRNALVMLMVKSANDVAVTIAEGVSGSVEAFADEMNRASARLGMRES 146

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            + N +GL D  Q+T+ARD A+LG  L   FP+   +++I   ++ ++I   HN LL + 
Sbjct: 147 YWVNPNGLPDDRQVTSARDLALLGRALLVEFPESAGFYNIGAMKFGSQIHPTHNGLLGRY 206

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
              DG+KTG+T  +G+N+V S  +    ++AVV+G P+   R  KA  L+    
Sbjct: 207 PGADGMKTGFTCPAGYNLVASATHGGQKLIAVVLGAPSGAARTAKAASLLDKAF 260


>gi|283851675|ref|ZP_06368954.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp.
           FW1012B]
 gi|283573005|gb|EFC20986.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp.
           FW1012B]
          Length = 362

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 78/254 (30%), Positives = 134/254 (52%), Gaps = 2/254 (0%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E+ A    S+++ + +  ++   +  +    PASLTK++TLYIIF+ ++  KL     + 
Sbjct: 91  EVPALTVKSAMLWNASTGELLYEQNPDFQIPPASLTKILTLYIIFDAIRQGKLRPWDVVD 150

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI-SGSEKKFAILMSN 164
           VS+ AATQ  S + L+          I  +   SAND   A  +++  G+   F  LM++
Sbjct: 151 VSERAATQGGSTMRLRNGESVKVTDMIKGIAVASANDACMAMADYLEGGNVDAFVALMND 210

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII 224
            AK++GM N+++ N +GL  + Q+TTARD   L     + FP+     S++ F + NR  
Sbjct: 211 TAKRLGMSNSVFMNPNGLPAEGQLTTARDMLRLASAYLEQFPKALSIHSLQFFSHNNRQR 270

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            N N LL      DG+KTG+   SG+NIV + +  D  ++AVV+G  + + R ++  +L+
Sbjct: 271 HNANSLLASYEGCDGLKTGFVCASGYNIVATAKRGDTRLIAVVLGSRSPRVRQRETAKLL 330

Query: 285 TSFLEKKTLKHQQT 298
               +   ++   T
Sbjct: 331 DKGFKLAAIRKATT 344


>gi|254518746|ref|ZP_05130802.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp.
           7_2_43FAA]
 gi|226912495|gb|EEH97696.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp.
           7_2_43FAA]
          Length = 401

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 149/305 (48%), Gaps = 34/305 (11%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+++I+    ++   K  DE   PAS+TK+MT+ +  E + S K+ L  ++  S+ A 
Sbjct: 50  AKSALLIEPKSGKILYEKNIDEKFAPASVTKIMTMLLTMEAVDSGKITLQDKVTCSENAK 109

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S + L      T E+ I  +   S ND + A  E++ G+E  F  +M+ +A+++GM
Sbjct: 110 KMGGSTMLLDTGEIRTVEELIKGVAIASGNDAAVALAEYLGGTEDAFVEMMNKRAQELGM 169

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITN 226
            NT +KN +GL  +  ++TARD +I+ + L K  P   KY      +I + R     + N
Sbjct: 170 VNTTFKNCNGLPIEGHLSTARDISIMSLELLK-HPTILKYSGIYMETISEGRKSPIELVN 228

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           HNKL+      DG+KTGYT  + + I  +       +++V+MG PT + R++ A  L+  
Sbjct: 229 HNKLVRFFEGCDGLKTGYTEEAKYCISATATRNGVRMLSVIMGAPTYKVRNRDAGMLLNY 288

Query: 287 --------------------FLEKKTLKHQQTHRKDNLSST-------SLKKSLMIKKLK 319
                               +L K+T K      K++L +         L+K ++I ++K
Sbjct: 289 GFSKFEGKKLLSKDEDVENIYLSKQTDKFLVARAKEDLVAIVPKGTNEELEKRIVIDEVK 348

Query: 320 RTYSQ 324
           + Y Q
Sbjct: 349 KEYKQ 353


>gi|126729339|ref|ZP_01745153.1| D-alanyl-D-alanine carboxypeptidase [Sagittula stellata E-37]
 gi|126710329|gb|EBA09381.1| D-alanyl-D-alanine carboxypeptidase [Sagittula stellata E-37]
          Length = 393

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 84/282 (29%), Positives = 147/282 (52%), Gaps = 10/282 (3%)

Query: 35  LFLSIIMISMASELHA--KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFE 91
           L  +   I +A++  A      ++ VIDV    +   K  DE   PAS++K+MTLYI FE
Sbjct: 8   LLAAGTAILLATQAAAFDTKATAAHVIDVTTGTVLLAKNADEAVPPASMSKLMTLYITFE 67

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            ++  +L L+ ++PVS+ A +   S ++L  K     E  +  +I  S ND      E +
Sbjct: 68  AIRDGRLSLDERLPVSEHAMSYTGSTMFLNTKDRIRVEDLLRGIIVLSGNDACAVLAEAL 127

Query: 152 S--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
           S  G+E  FA LM+ +A ++GM N+ +KNASG      + + RD  +L + + ++FP++Y
Sbjct: 128 SPDGTEAGFARLMTQRAHQLGMTNSTFKNASGWPADGHVMSMRDLTLLALHIIQDFPEFY 187

Query: 210 KYFSIRKFRYRNR---IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
             F  +KF +  R    + N N LL+     DG+KTG+T+ +G+ +V S +     I+  
Sbjct: 188 PMFGEKKFEFDGRAPSNVNNRNPLLSLNIGADGLKTGHTQEAGYGLVGSAKNDQRRIIFA 247

Query: 267 VMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
           + G+ T+ ER +++  ++     +     Q   +KD   + +
Sbjct: 248 MTGLATAGERAEQSEAIVNWAFRQ--FAEQTIVKKDQPITQA 287


>gi|317486130|ref|ZP_07944975.1| D-alanyl-D-alanine carboxypeptidase [Bilophila wadsworthia 3_1_6]
 gi|316922615|gb|EFV43856.1| D-alanyl-D-alanine carboxypeptidase [Bilophila wadsworthia 3_1_6]
          Length = 339

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 85/282 (30%), Positives = 153/282 (54%), Gaps = 17/282 (6%)

Query: 28  IQLMGKILFL--SIIMISMASELHAKPKY--------------SSIVIDVNKNQMTGFKQ 71
           I LM   L +  S+++   A   +A+  +              S++++D    ++   + 
Sbjct: 14  IPLMAGFLLIAASLVLAPAAEARNARKAHAAQSTASRQILNVRSAVLMDARTGKILYSQN 73

Query: 72  DEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
            + R  PASLTK+M++ + F+ ++S K+ L+ QI VS+ AA Q  S++ L+     +  +
Sbjct: 74  PDVRIPPASLTKIMSMMVTFDAIRSGKVKLSDQIRVSRHAARQGGSRMGLRAGERVSLNR 133

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            ++ +   S ND S A  E + GS + F  +M+NKA++IGM ++ +K  +GL    Q TT
Sbjct: 134 LLMGMAVSSGNDASMAVAERVGGSGRAFVKMMNNKARQIGMSSSTFKTPNGLPAAGQYTT 193

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           ARD A LG +  KN P   +Y  +R  ++R  + TN N LL      DG+KTG+   SG+
Sbjct: 194 ARDMARLGYVYLKNNPSALQYHRVRVLKHRGAVTTNKNPLLGACPGADGLKTGWVTASGY 253

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           NI++++R  +  ++AV++G  ++  R  +   L+ +  + +T
Sbjct: 254 NIISTVRRGNTRLIAVILGADSAGLRSHEVRRLVEAGFKSRT 295


>gi|170730550|ref|YP_001775983.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa M12]
 gi|167965343|gb|ACA12353.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa M12]
          Length = 347

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 80/286 (27%), Positives = 144/286 (50%), Gaps = 17/286 (5%)

Query: 59  IDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-- 115
           +D    Q+   +       PASLTK+MT Y+I   +++ K+H + Q+ +++ A  +    
Sbjct: 1   MDFASGQVLAGENIHTHLAPASLTKVMTSYVIAAEIKNGKVHRDDQMMMTENAWRKGGAG 60

Query: 116 ---SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S            E     +I +S ND + A  E ++GSE+ FA LM++ A++IGM+
Sbjct: 61  TDGSYSGFPVNKTARLEDMEQGMIVQSGNDAAIALAEHVAGSEEAFASLMNSYAQRIGMK 120

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           N+ + +A+GL  +   ++A D A+LG  L ++ P+ Y Y  +++        +N N LL 
Sbjct: 121 NSHFVDATGLSAEGHYSSAYDMALLGRALIRDSPETYAYNKVKELVVNGIKQSNRNLLLW 180

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS---FLE 289
           +  ++DGIKTG+T  +G+ I+ S +  D  I+ VVMG  + ++R + +L L+     F E
Sbjct: 181 RDPSVDGIKTGHTSEAGYCIINSAKRGDQRILTVVMGDVSEKKRAEDSLALLNWGFRFFE 240

Query: 290 KKTL--------KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
             TL        KH+    + +     + + L +   +  Y+  K 
Sbjct: 241 THTLYEPGKVVIKHKIWKGQVSEVQLGVTRPLFVTVQRGRYNDLKP 286


>gi|222149991|ref|YP_002550948.1| penicillin-binding protein [Agrobacterium vitis S4]
 gi|221736973|gb|ACM37936.1| penicillin-binding protein [Agrobacterium vitis S4]
          Length = 366

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 80/248 (32%), Positives = 138/248 (55%), Gaps = 4/248 (1%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           + S + A P    +V+DVN   +   +   +  YPASLTK+MT Y  F  L++ ++ L++
Sbjct: 20  LPSAVAANPV---LVVDVNSLTVLEHQDSFKKWYPASLTKLMTAYTTFRALRAGEVRLDS 76

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA+Q PSK++ K  +  T +  +  ++ +SAND++ A  E + GS+  F   M
Sbjct: 77  VVTLSAFAASQAPSKMFFKPGSKMTLDDALKMMLVKSANDIAVAVAENVGGSQAAFVARM 136

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
           + +A ++GM ++ + N +GL    Q +TARD A+L + +R+ FP+Y  YF I       +
Sbjct: 137 NAEAARLGMTSSHFVNPNGLPAPGQYSTARDLAVLAVTIRREFPEYAGYFKIEAIDTGKK 196

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           +  N N L+ +   +DG+KTGY   SGFN +TS       ++ VVMG  +   R   +  
Sbjct: 197 VYPNVNMLVGRFDGVDGMKTGYICASGFNQITSATRNGRTLITVVMGADSLAARADISAN 256

Query: 283 LITSFLEK 290
           L+  + ++
Sbjct: 257 LLQKYFDR 264


>gi|304316784|ref|YP_003851929.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778286|gb|ADL68845.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 381

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 85/275 (30%), Positives = 142/275 (51%), Gaps = 9/275 (3%)

Query: 29  QLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLT 81
           +++  IL  ++I       I+ A     K K S+I++D +  ++   K   E   PAS+T
Sbjct: 4   KIISFILIFTLIYTIITEDIAYADNFDLKSK-SAILMDASTGKVLYEKNSHEELPPASVT 62

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT+ ++ E L S K+    ++  S+ A     +++YL+     T +  + ++   SAN
Sbjct: 63  KVMTMLLVMEALDSGKIKTTDKVVTSEHAFDMGGTQIYLEVGEEMTVDDLLKSVAMNSAN 122

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D S A  E+ISGSE+KF   M+ +AK++G +NT +KNASGL +K+  T+  D A++   L
Sbjct: 123 DASVALAEYISGSEEKFVEEMNKRAKELGAKNTNFKNASGLPEKDHYTSVYDIALISREL 182

Query: 202 RKNFPQY-YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
            K+   + Y    I   R     + N NKLL +    DGIKTG T  + + +  + +  D
Sbjct: 183 VKHKGIFKYLTDKIDSVRNGKFSLANTNKLLWRYQGADGIKTGSTSEALYCLSATAKRGD 242

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEKKTLKH 295
              +AV+ G P S  R ++A +L+         K 
Sbjct: 243 TRFIAVIFGAPDSNTRFKEASKLLDYGFANFETKK 277


>gi|299769239|ref|YP_003731265.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           [Acinetobacter sp. DR1]
 gi|298699327|gb|ADI89892.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           [Acinetobacter sp. DR1]
          Length = 382

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 82/272 (30%), Positives = 144/272 (52%), Gaps = 9/272 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPK---YSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           + R   +   +L  S      A+ L A P+    S +++D    Q+   K  +E   PAS
Sbjct: 1   MTRKSAIAALLLLPSFSY--AATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPAS 58

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGILALI 136
           +TKMMT YII + L   +L  N Q+ ++++A    + + S +Y+      T  + +  +I
Sbjct: 59  MTKMMTSYIIEQKLLKGELTENEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGII 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E I+G+E  FA +M+ +AK+IGM NT + N++GL  +   +TA+D A+
Sbjct: 119 IQSGNDASKAMAEHIAGNEGTFAHMMNQEAKRIGMTNTQFINSTGLPAEGHYSTAKDMAV 178

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   + K+  +YY  +S ++F +      N N LL    ++DG+KTG+T  +G+ + TS 
Sbjct: 179 LAQHIIKDSSRYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSS 238

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +     +++V+ G  +  ER  +   L++   
Sbjct: 239 KRGPMRLISVIFGTDSVNERANQTRTLLSWGF 270


>gi|239904889|ref|YP_002951627.1| putative D-alanyl-D-alanine carboxypeptidase [Desulfovibrio
           magneticus RS-1]
 gi|239794752|dbj|BAH73741.1| putative D-alanyl-D-alanine carboxypeptidase [Desulfovibrio
           magneticus RS-1]
          Length = 386

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 77/237 (32%), Positives = 129/237 (54%), Gaps = 2/237 (0%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+ ++N  ++   +  D    PASLTK++TLYI+F+ ++  +L     I VS  AATQ
Sbjct: 121 SAILWNMNTGEVLYEQNPDVQIPPASLTKVLTLYILFDAIRQGRLRPWDVIEVSPRAATQ 180

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI-SGSEKKFAILMSNKAKKIGMQ 172
             S + L+          I  +   SAND   A  + + +G+ + F  LM++ AK++GM 
Sbjct: 181 GGSNMRLRPGEQVKVTDLIKGIAVASANDACMAIADNLENGNAEAFVALMNDTAKRLGMT 240

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           N+++ N +GL    Q+TTARD   L     + FP+     S++ F + NR   N N LL 
Sbjct: 241 NSVFFNPNGLPADGQVTTARDMLKLAAAYLEQFPKSLTIHSMQFFTHNNRQRHNANSLLG 300

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           +   +DG+KTG+   SG+NIV +    D  ++AVV+G    + R+++  +L+    +
Sbjct: 301 RYEGVDGLKTGFVCASGYNIVATAMRGDTRLIAVVLGSRNPRVRERETAKLLDKGFK 357


>gi|256253946|ref|ZP_05459482.1| cobalamin synthesis protein P47K [Brucella ceti B1/94]
          Length = 630

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 95/301 (31%), Positives = 160/301 (53%), Gaps = 19/301 (6%)

Query: 33  KILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYII 89
           +I F ++    +A S   A P   SI +DV   ++   +QD  +  YPASLTKMMT Y+ 
Sbjct: 2   RIWFAAVAFSGIALSGAAANP---SIAVDVATGKV-YEQQDAFQRWYPASLTKMMTAYVT 57

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           F  LQS ++ L + + ++  A+ + PSK+  K  +  T +  +  ++ +SANDVS A  E
Sbjct: 58  FRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVAE 117

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            + G+E  F   M+ +A+++GM  + + N +GLHD N  TTARD A+L + LR+ FPQY 
Sbjct: 118 AVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRREFPQYA 177

Query: 210 KYFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            YF+          ++  N+N LL +    DG+KTG+   SGFN+  S       ++A+V
Sbjct: 178 HYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRTVLAIV 237

Query: 268 MGMPTSQERDQKALELITSFLEKK--------TLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
           +G    + R  +A +++T     +        TL+  QT   +   +  ++K++  ++  
Sbjct: 238 LGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQ--AVDMRKAICSEQAS 295

Query: 320 R 320
            
Sbjct: 296 E 296


>gi|160942230|ref|ZP_02089539.1| hypothetical protein CLOBOL_07116 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434787|gb|EDP12554.1| hypothetical protein CLOBOL_07116 [Clostridium bolteae ATCC
           BAA-613]
          Length = 453

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 84/269 (31%), Positives = 135/269 (50%), Gaps = 14/269 (5%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           S A+   A P  S+I+++ +  Q+   K  DE R PAS+TK+MTL +IF+ LQS K+ L 
Sbjct: 86  SQAAVQIAAP--SAILMEASTGQVIYEKDADEKRSPASVTKVMTLILIFDALQSGKIQLT 143

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
            ++  S  A +   S+++L+E    T E  I  ++  S ND S A  E+I+GSE +F  +
Sbjct: 144 DEVVTSAHAKSMGGSQVFLEEGEKQTVETLIKCIVIASGNDASVAMAEYIAGSEDEFVRM 203

Query: 162 MSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY- 219
           M+ +A  +GM NT + +  GL +  +  TTARD AI+   L   +PQ + Y +I      
Sbjct: 204 MNERAASLGMSNTHFVDCCGLTESPDHYTTARDIAIMSRELINKYPQIHNYSTIWMENIT 263

Query: 220 -------RNRIITNHNKLLNKMHN--IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
                  +   ++N NKLL    N  + G+KTG T  + + +  +       ++A +M  
Sbjct: 264 HVTKQGTKEFGLSNTNKLLKMATNFTVTGLKTGSTSIAKYCLSATAEKDGVRLIAAIMAA 323

Query: 271 PTSQERDQKALELITSFLEKKTLKHQQTH 299
           P  + R   A  L+        L   + H
Sbjct: 324 PDFKARFADAQTLLNYGYANCKLYEDKEH 352


>gi|261364923|ref|ZP_05977806.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria mucosa ATCC
           25996]
 gi|288566708|gb|EFC88268.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria mucosa ATCC
           25996]
          Length = 417

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 79/236 (33%), Positives = 131/236 (55%), Gaps = 2/236 (0%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
            IV D++ +Q+      D    PASLTKMMT Y+ F+ L++  L  +  + VS       
Sbjct: 66  YIVTDLHSHQVLASSNIDTQIEPASLTKMMTAYLTFKALENGTLRADQMLTVSDAGWKIE 125

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQN 173
            S+++L  K   +    I  +I +S ND +T   E + G S   F   M+ +AK++GM  
Sbjct: 126 GSRMFLIPKVPASVSDLIKGMIVQSGNDAATTLAEAMGGGSVDVFVQQMNEEAKRLGMTK 185

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           T +KN +GL  +  ++T  D AIL   L  ++P+YY  FSI+ F+Y N    N N LL +
Sbjct: 186 THFKNPTGLAAEGHVSTVGDLAILSAALIHDYPKYYPVFSIKSFKYNNVEQPNRNLLLYR 245

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
             N+DG+KTG+T ++G+N+  S +     IV++V+G  +++ R  ++ +L+   L+
Sbjct: 246 DSNVDGLKTGHTESAGYNLAASSKRNGRRIVSIVVGTDSTEARASESGKLLNWALQ 301


>gi|90424200|ref|YP_532570.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisB18]
 gi|90106214|gb|ABD88251.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisB18]
          Length = 418

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 123/244 (50%), Gaps = 6/244 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++I+++ +   +   K  DE R P+S+ K+MT+ ++F  LQ   + L  Q  VS+ A 
Sbjct: 58  APTAILVEASTGSVLYEKNADELRAPSSMMKLMTVELVFRALQQGDIKLTDQYQVSENAW 117

Query: 112 TQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
            +       S ++ +  +    E  +   I +S ND    F E + G E+ FA L++ +A
Sbjct: 118 RKGGAPAGNSTMFAEIHSRIAVEDLLRGAIVQSGNDACMVFAEALGGGERGFAELLTKRA 177

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
           +++G+  + + N++GL D     + R+ A L   L + +P++YK F  R+F +     TN
Sbjct: 178 RELGLAKSTFANSNGLPDPGNKMSVRELARLARHLIQTYPEFYKIFGEREFTWNKIRQTN 237

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            N LL  +   DG+KTGYT+  G+ +V S       ++ V+ G+    +R  +A +L+  
Sbjct: 238 RNPLLTMLDGADGLKTGYTKEGGYGMVGSAVQNGMRLIVVINGVEDIDDRASEAKKLLEW 297

Query: 287 FLEK 290
               
Sbjct: 298 GFRN 301


>gi|83589906|ref|YP_429915.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica
           ATCC 39073]
 gi|83572820|gb|ABC19372.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica
           ATCC 39073]
          Length = 385

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 74/275 (26%), Positives = 129/275 (46%), Gaps = 19/275 (6%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP-----KYSSIVIDVNKNQMTGFKQD-EPRYPAS 79
           ++++ +  IL L +     +S + A         ++++++ +  Q+   +   E R PAS
Sbjct: 2   KHVKHVVLILALVVFCFLGSSPVKAADELQITAPAAVLMEASTGQVLYERGAREKRPPAS 61

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
            TK+MT  +  E  +     L+T I VS+ AAT   + +YL++    T    +   +  S
Sbjct: 62  TTKIMTAILALELGR-----LDTPIKVSENAATTPGASIYLQKGEVLTLGDLVKGALLES 116

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND + A  E ++GSE  FA LM+ KA  +G + T + N +GL D    T+A D A++  
Sbjct: 117 GNDATVAIAEGLAGSEAGFAFLMNRKAWLLGARTTHFNNPNGLPDPGHYTSAYDLALIAR 176

Query: 200 LLRKNFPQYYKYFSIRKFRYRN----RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
               N P + +  +  + +       R + N N+LL      DG+KTG T  +G  +V S
Sbjct: 177 YALGN-PVFRRLVATVEDQIPGPDGVRHLYNTNRLLESYPGADGVKTGTTAAAGQCLVAS 235

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                  ++AVV+G   S +R      L+    + 
Sbjct: 236 ATRGGRQLIAVVLG---SADRYGDTRTLLDYGFKN 267


>gi|169831388|ref|YP_001717370.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638232|gb|ACA59738.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 366

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 134/241 (55%), Gaps = 4/241 (1%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+++++    Q+   K+  + +  AS+TK+MT+ +  E L S K  L+  I  S+ AA
Sbjct: 20  AESAVLLEPVSGQILYEKEPYKEQPIASVTKIMTMLLAVEALDSGKAKLDDIIVTSEHAA 79

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S++YL  +   +  + ++++ T SAND S A  E ++GSE+ F  +M+++A ++G 
Sbjct: 80  GMGGSQIYLAPQEKMSFREMLISVATGSANDASVAIAEHVAGSEEAFVQMMNDRAAELGA 139

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIITNHNK 229
           ++T Y N +GL  +   + A DQA++     K +P + +  +I+++  R     + N NK
Sbjct: 140 KHTHYVNPTGLPAEGHYSCAYDQAVILREALK-YPLFREVSAIKEYDLRGGEFKLWNTNK 198

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           LL      D  KTG+T  + + + +S++  +  ++AVV+G+P ++   +++++L      
Sbjct: 199 LLWWYPGADAGKTGWTNEAKYCLASSVKKDNLRLIAVVLGVPETKGHFRESIKLYNWGFA 258

Query: 290 K 290
           +
Sbjct: 259 R 259


>gi|110680629|ref|YP_683636.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter denitrificans OCh
           114]
 gi|109456745|gb|ABG32950.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter denitrificans OCh
           114]
          Length = 389

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 146/276 (52%), Gaps = 12/276 (4%)

Query: 31  MGKILFLSIIMISMASELHA--KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLY 87
           M +IL  + ++++      A      ++ V+D     +   K  D P  PAS++K+MTLY
Sbjct: 1   MFRILLAAFVLVASTLTAAAFETRASAAFVMDQTTGTVLLNKNADAPLPPASMSKLMTLY 60

Query: 88  IIFEYLQSKK----LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           + FE ++  K    L LN ++PVS+ A +   S ++L+     + E  +  +I  S ND 
Sbjct: 61  MAFEAVRRGKADGGLDLNERLPVSEHAQSYGGSSMFLRSGETVSVEDLLRGIIVVSGNDA 120

Query: 144 STAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
                E +S  G+E  FA +M+ +A+++GM N+++ NASG      + + RD AIL   L
Sbjct: 121 CVVIAEALSPDGTEYGFARMMTQRAQQLGMNNSVFINASGWPQTGHVMSMRDLAILADRL 180

Query: 202 RKNFPQYYKYFSIRKFRYRNRII---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             +FP++Y  F+  +F + NR+     N N +L      DG+KTG+T+ +G+ +V S + 
Sbjct: 181 ITDFPEFYPMFAETEFPFDNRVPSNSRNRNPVLTMGIGADGLKTGHTQEAGYGLVGSAKQ 240

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
            D  I+ V+ G+ T+  R Q++  ++     +  ++
Sbjct: 241 GDRRIIFVITGLETTAARAQESQAIVNWAFRQFAMR 276


>gi|110802732|ref|YP_699090.1| penicillin-binding protein dacf precursor [Clostridium perfringens
           SM101]
 gi|110683233|gb|ABG86603.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens SM101]
          Length = 402

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 83/291 (28%), Positives = 151/291 (51%), Gaps = 15/291 (5%)

Query: 24  IQRNIQLMGKI-LFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRY 76
           +++ I+ +    +FLS+  I  +  + A+        S+++++ +  ++   K  +E   
Sbjct: 1   MKKYIRKIAAFSIFLSLFSIVSSVPVKAEEAIEVEARSALLMEASTGKIIYEKNANEKFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT+ +  E +   ++ L+ QI VS+TA     S + L      T E+ I  + 
Sbjct: 61  PASVTKVMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGSTMLLDVGEVRTVEEIIKGIG 120

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A  E++ GSE  F  +M+ +A+++GM+NT +KN +GL  +  ++TA D +I
Sbjct: 121 IASGNDAAVAMAEYLGGSESGFVEMMNKRAEELGMKNTTFKNCTGLPIEGHLSTAYDISI 180

Query: 197 LGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +   L K  P   KY      +I + R     + NHNKL+      DG+KTG+T ++ + 
Sbjct: 181 MSRELLK-HPTILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTNDAKYC 239

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKD 302
           I  +       +++V+MG PT + R++ A  L+     K   + +Q   KD
Sbjct: 240 ISATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGFSK--FESKQVATKD 288


>gi|254452232|ref|ZP_05065669.1| D-alanyl-D-alanine carboxypeptidase family protein [Octadecabacter
           antarcticus 238]
 gi|198266638|gb|EDY90908.1| D-alanyl-D-alanine carboxypeptidase family protein [Octadecabacter
           antarcticus 238]
          Length = 450

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 86/253 (33%), Positives = 136/253 (53%), Gaps = 2/253 (0%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           M ++A        Y+++V+D    ++   +  D   +PASLTKMMTLYI F+ ++  ++ 
Sbjct: 1   MAALAPIAGNSAPYAAMVMDARTGEILHSRNADTQLHPASLTKMMTLYIAFQAIERGEIS 60

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           L+  I ++  AA + PSKL L           + A   +SAND +TA G  + G+E  FA
Sbjct: 61  LDDMITITPVAANEPPSKLGLVAGQRIQFRYLVRASGVKSANDAATAIGIALEGNEAAFA 120

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             M+  A+ +GM  T ++NA GL +   ++TARD  +LG  +  +FPQYY  FS      
Sbjct: 121 RRMTATARAMGMSRTTFRNAHGLTESGHLSTARDMTVLGRHMIYDFPQYYNIFSRLTTDA 180

Query: 220 RNRIITNHN-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
             R + N N + L+     DGIKTGYTR +GFN+V S     + I+A + G  ++ +R+ 
Sbjct: 181 GVRQVANTNRRFLSAYRGADGIKTGYTRAAGFNLVASAERGQERIIATMFGGSSTAQRNA 240

Query: 279 KALELITSFLEKK 291
           +  EL+     + 
Sbjct: 241 RVAELLDMGFARA 253


>gi|256003606|ref|ZP_05428595.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           DSM 2360]
 gi|255992397|gb|EEU02490.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           DSM 2360]
 gi|316939774|gb|ADU73808.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           DSM 1313]
          Length = 396

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 69/282 (24%), Positives = 133/282 (47%), Gaps = 13/282 (4%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++IVID +  ++   K     R  AS TK+MT  +  E       +L+ ++ VS  AA
Sbjct: 39  AKAAIVIDADTGRVLYEKDAYSRRAIASTTKIMTAIVAIE-----NGNLDDKVKVSSRAA 93

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S + LK     T ++ +  ++ RS ND + A  E + G+ + F  +M++KA+++G+
Sbjct: 94  SIWGSTIKLKPGEELTLKELLYGMMLRSGNDAALAVAEHVGGTVENFVKMMNDKARELGL 153

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +NT +K   GL  +   +TA + A+L     +N P + +  + +     NR +   N++L
Sbjct: 154 KNTAFKTPHGLDVEGHYSTAYELAMLTRYALQN-PVFAQIVATKSTTITNRSLYTTNEML 212

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
           +     DG+KTGYT  +G  +VTS       I++VV+   +  +R + +  ++       
Sbjct: 213 SLYPGADGVKTGYTGKAGRCLVTSATRDGFKIISVVLNCSSRSKRAESSKTILDYAFNNY 272

Query: 292 TLKH--QQTHRKDNLSSTSLKKS----LMIKKLKRTYSQFKK 327
                 +       +     KK     + ++ +K   S+ +K
Sbjct: 273 KPYELLRANQELGRVKVYKGKKDSVPVVAVESIKMPLSREEK 314


>gi|157964469|ref|YP_001499293.1| penicillin-binding protein dacF precursor [Rickettsia massiliae
           MTU5]
 gi|157844245|gb|ABV84746.1| Penicillin-binding protein dacF precursor [Rickettsia massiliae
           MTU5]
          Length = 313

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 98/278 (35%), Positives = 157/278 (56%), Gaps = 7/278 (2%)

Query: 30  LMGKILFLSIIMISMASELHA------KPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTK 82
           L+  I  ++     ++    A       P  +S+VID    ++      + R YPASLTK
Sbjct: 13  LLPYIFVVTFFFAPISEATKAVKNTPKPPVQTSLVIDAKSGKVLQAHNSQIRIYPASLTK 72

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MTLY++FE +++ KL L+ ++ VS  A+   P KL LK     T  + I  LI +SAND
Sbjct: 73  LMTLYLMFEAIEAGKLPLDKKLLVSAKASKMPPCKLGLKAGETITVREAINGLIIKSAND 132

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            +    E + GSEK FA LM+ KAK++GM+NT +KNASG HD  Q TTARD A L + L+
Sbjct: 133 AAVTVAEGMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHDPLQQTTARDMAKLAMALK 192

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           +++P++Y  F+   F +R  ++  HN++       +G+KTG+   +G+N+VT+       
Sbjct: 193 RDYPKFYPLFAKTSFVFRGNVVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKS 252

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           ++AVV G  ++  RDQK + L+      K +  + + +
Sbjct: 253 LIAVVTGGKSAASRDQKMMGLLDQHFNIKPIVPKPSIK 290


>gi|254709015|ref|ZP_05170826.1| cobalamin synthesis protein P47K [Brucella pinnipedialis B2/94]
 gi|256030540|ref|ZP_05444154.1| cobalamin synthesis protein P47K [Brucella pinnipedialis M292/94/1]
 gi|256158532|ref|ZP_05456426.1| cobalamin synthesis protein P47K [Brucella ceti M490/95/1]
 gi|265987587|ref|ZP_06100144.1| cobalamin synthesis protein P47K [Brucella pinnipedialis M292/94/1]
 gi|264659784|gb|EEZ30045.1| cobalamin synthesis protein P47K [Brucella pinnipedialis M292/94/1]
          Length = 635

 Score =  268 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 95/301 (31%), Positives = 160/301 (53%), Gaps = 19/301 (6%)

Query: 33  KILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYII 89
           +I F ++    +A S   A P   SI +DV   ++   +QD  +  YPASLTKMMT Y+ 
Sbjct: 7   RIWFAAVAFSGIALSGAAANP---SIAVDVATGKV-YEQQDAFQRWYPASLTKMMTAYVT 62

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           F  LQS ++ L + + ++  A+ + PSK+  K  +  T +  +  ++ +SANDVS A  E
Sbjct: 63  FRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVAE 122

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            + G+E  F   M+ +A+++GM  + + N +GLHD N  TTARD A+L + LR+ FPQY 
Sbjct: 123 AVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRREFPQYA 182

Query: 210 KYFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            YF+          ++  N+N LL +    DG+KTG+   SGFN+  S       ++A+V
Sbjct: 183 HYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRTVLAIV 242

Query: 268 MGMPTSQERDQKALELITSFLEKK--------TLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
           +G    + R  +A +++T     +        TL+  QT   +   +  ++K++  ++  
Sbjct: 243 LGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQ--AVDMRKAICSEQAS 300

Query: 320 R 320
            
Sbjct: 301 E 301


>gi|49476281|ref|YP_034322.1| penicillin-binding protein [Bartonella henselae str. Houston-1]
 gi|49239089|emb|CAF28392.1| Penicillin-binding protein [Bartonella henselae str. Houston-1]
          Length = 368

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 94/260 (36%), Positives = 146/260 (56%), Gaps = 6/260 (2%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL 93
           LFLS ++   +S   A+P  S   +DV   ++    Q  E  YPASLTK+MT Y+IF  +
Sbjct: 8   LFLSFVLSFTSSLALAQPFIS---VDVKTGRILEHNQAFERWYPASLTKLMTAYVIFRAM 64

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
              ++  N  I +S+ AA     +   K  +  T +  +   + +S ND++ A  E ++G
Sbjct: 65  SRGEISSNKHITISEYAAKAPTYRSGYKAGSVLTLDTALSITMVKSTNDLAIAMSEAVAG 124

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+K F   M+ +A+++GM  T + NASGL D N  +TARD A+L I +R+ FPQY  YFS
Sbjct: 125 SQKAFVKKMNAEAQRLGMFGTHFANASGLPDPNNYSTARDIALLAIQIRREFPQYAHYFS 184

Query: 214 IRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           I    + N  +I  N N L+ +   IDG+KTG+   SGFN+V S       I+AV++G  
Sbjct: 185 IPAIDFGNKRKIQPNSNNLIGRFDGIDGMKTGFICASGFNLVASATRNKRTIIAVILGSK 244

Query: 272 TSQERDQKALELITSFLEKK 291
              ER++KA +L+ +   ++
Sbjct: 245 NISEREKKAAKLLETGFSRQ 264


>gi|255320588|ref|ZP_05361766.1| D-alanyl-D-alanine carboxypeptidase DacC [Acinetobacter
           radioresistens SK82]
 gi|262378578|ref|ZP_06071735.1| penicillin-binding protein 6 [Acinetobacter radioresistens SH164]
 gi|255302350|gb|EET81589.1| D-alanyl-D-alanine carboxypeptidase DacC [Acinetobacter
           radioresistens SK82]
 gi|262299863|gb|EEY87775.1| penicillin-binding protein 6 [Acinetobacter radioresistens SH164]
          Length = 382

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 84/285 (29%), Positives = 149/285 (52%), Gaps = 11/285 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPK----YSSIVIDVNKNQMTGFKQ-DEPRYPA 78
           + R   +   +L  S    S A+ + + P      S +++D    Q+   K  +E   PA
Sbjct: 1   MTRKSAIAALLLLPSF---SYAATVLSSPPELNNKSYVLMDYETGQILAAKNENEKLAPA 57

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK---LYLKEKTYFTTEQGILAL 135
           S+TKMMT YII + L   +L  N Q+ ++++A  +  S    +Y+      +  + +  +
Sbjct: 58  SMTKMMTSYIIEQKLLKGELTENEQVRMNESAWCRGSSSESCMYVPLNGTASVLEMLRGI 117

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I +S ND S A  E ++G+E  FA +M+ +AK+IGM NT + N++G+  +  ++TA+D A
Sbjct: 118 IVQSGNDASKAVAEHVAGNEGTFAHMMNQEAKRIGMVNTHFVNSTGMPAEGHVSTAKDMA 177

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           IL   + K+  +YY  +S ++F +      N N LL    ++DG+KTG+T  +GF + TS
Sbjct: 178 ILAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGFCLTTS 237

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
            +     +++V+ G PT QER  +  +L+          + Q  +
Sbjct: 238 SKRGPMRLISVIFGAPTMQERATQTRDLLGWGYANFETANVQPAK 282


>gi|260892123|ref|YP_003238220.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ammonifex
           degensii KC4]
 gi|260864264|gb|ACX51370.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ammonifex
           degensii KC4]
          Length = 392

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 70/273 (25%), Positives = 129/273 (47%), Gaps = 18/273 (6%)

Query: 28  IQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEPR-YPASLTK 82
           ++L   ++ L  +      +  A P      ++++++    Q+   K  E R YPAS TK
Sbjct: 1   MRLGTAVIALIFVFFLGLGQAWAAPPEVKAEAAVLMEAETGQILYAKNPEERMYPASTTK 60

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           ++T  ++ ++ +     LN QI  S  A     S ++LKE    + +  + AL+  SAND
Sbjct: 61  ILTALVVLQHAR-----LNDQIVASPEAVGTEGSSIWLKEGEKLSVKDALYALLLNSAND 115

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
           V+ A  + +SGS   FA LM+  A+  G  ++ + N  GL D    TTA D A +  +  
Sbjct: 116 VAVALAQKVSGSIPAFAQLMNETARACGATSSHFTNPHGLPDPEHYTTALDLARITRVAL 175

Query: 203 KNFPQYYKYFSIRKFRYR------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
            N   + +  + + + +         ++ NHNKLL +     G+KTGYT  +G  +V + 
Sbjct: 176 GN-RLFREIVATKTYTFHRPTLPEPFVLVNHNKLLWRYEGAIGVKTGYTTAAGQCLVAAA 234

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           +     ++AV++    ++     A++L+     
Sbjct: 235 QRNGRELIAVILKSEGTEV-WNDAVKLLDYGFN 266


>gi|254719144|ref|ZP_05180955.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. 83/13]
 gi|265984138|ref|ZP_06096873.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
 gi|264662730|gb|EEZ32991.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
          Length = 410

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 103/264 (39%), Positives = 160/264 (60%), Gaps = 6/264 (2%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMM 84
           R  +    + F + ++ +      A    S +V D +  +M G         PASL KMM
Sbjct: 20  RISRFFASVAFGTAVLCASG----AMASTSWVVFDADSGRMLGQDDASAQHAPASLAKMM 75

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TLY+ FE L++ +LH +  +P+SK AA++   KL+LK     +T   +  +I  SAND +
Sbjct: 76  TLYLTFEALKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAA 135

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-NQITTARDQAILGILLRK 203
           T  GE+++GSE  FA LM+ +A++IGM++TI+ N SGL    +Q+TTARD A+LG+ LR+
Sbjct: 136 TVMGEYLAGSEAAFARLMTQRARQIGMKSTIFANPSGLTASVSQLTTARDMAVLGMALRR 195

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           +FP+ Y  FS R F +R R+   HN L+ +   +DGIKTGYT  SG+N+V+S    +  +
Sbjct: 196 DFPEEYALFSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSSAYINNKHL 255

Query: 264 VAVVMGMPTSQERDQKALELITSF 287
           V VV+G  ++ +RD +  +L+T F
Sbjct: 256 VGVVLGAGSAGQRDGQMAKLLTRF 279


>gi|148653555|ref|YP_001280648.1| Serine-type D-Ala-D-Ala carboxypeptidase [Psychrobacter sp. PRwf-1]
 gi|148572639|gb|ABQ94698.1| Serine-type D-Ala-D-Ala carboxypeptidase [Psychrobacter sp. PRwf-1]
          Length = 413

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/238 (33%), Positives = 130/238 (54%), Gaps = 4/238 (1%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-- 111
           + I++D +   +   K  D+P  PASLTKMMT +II + L S ++     + ++++A   
Sbjct: 64  AYILMDYDTGVILAEKNADQPLPPASLTKMMTSHIIEKKLMSGEMKETDPVLMTESAWCR 123

Query: 112 -TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            T + S +Y+           +  +I +S ND S A  E I+GSE  FA +M+ +AK +G
Sbjct: 124 GTSDQSCMYVPVNKSAPAIDMLRGIIIQSGNDASKAMAEHIAGSESAFAQIMNAEAKALG 183

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M NT + NA+G+ D+    +ARD AIL   + K    YYK +S ++F Y N    N N L
Sbjct: 184 MTNTHFVNATGMPDEGHRASARDLAILSRAIIKQGGDYYKLYSEKEFTYNNITQGNRNAL 243

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           L     +DG+KTG+T  +G+ +  S +  D  +++V+MG  + Q R  ++ EL+    
Sbjct: 244 LRTDPTVDGLKTGHTDAAGYCLAASSKRNDMRLISVIMGSKSMQARADQSRELLNWGF 301


>gi|75675891|ref|YP_318312.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
           winogradskyi Nb-255]
 gi|74420761|gb|ABA04960.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
           winogradskyi Nb-255]
          Length = 587

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 108/245 (44%), Positives = 155/245 (63%), Gaps = 1/245 (0%)

Query: 51  KPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
            P ++SIV+D N          D  R+PASLTKMMTLY++FE L + ++ L++++ VS  
Sbjct: 53  NPPFASIVVDANSGATLSSTSPDSLRHPASLTKMMTLYMLFERLDAGRIGLDSEMRVSAR 112

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           AA QNP+KL L+       E  I  L+T+SAND +    E I+G E  FA +M+ KA+ +
Sbjct: 113 AAAQNPTKLGLRPGQTIRVEDAIKGLVTKSANDAAVVIAEAIAGDEDDFARMMTRKARAL 172

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM  T+Y+NASGL D +Q+TTARDQA LG  L+  FP+YY+YF+   F +R R I  HN+
Sbjct: 173 GMTRTVYRNASGLPDDDQVTTARDQATLGRALQDRFPRYYRYFATTSFTFRGRTIRGHNR 232

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           L+  +  +DGIKTGY R SGFN+VT+L+  +  +V VV+G  +   RD    +L+   L+
Sbjct: 233 LVGSVDGVDGIKTGYIRASGFNLVTNLKRGNRHLVGVVLGGRSGGSRDATMRKLLAENLD 292

Query: 290 KKTLK 294
           K   +
Sbjct: 293 KAATR 297


>gi|294852342|ref|ZP_06793015.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026]
 gi|294820931|gb|EFG37930.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026]
          Length = 410

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 102/264 (38%), Positives = 159/264 (60%), Gaps = 6/264 (2%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMM 84
           R  +    + F + ++ +      A    S +V D +  +M G         PASL KMM
Sbjct: 20  RISRFFASVAFGTAVLCASG----AMASTSWVVFDADSGRMLGQDDASAQHAPASLAKMM 75

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TLY+ FE L++ +LH +  +P+SK AA++   KL+LK     +T   +  +I  SAND +
Sbjct: 76  TLYLTFEALKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAA 135

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-NQITTARDQAILGILLRK 203
           T  GE+++GSE  FA LM+ +A++IGM++TI+ N SGL    +Q+TTARD A+LG+ LR+
Sbjct: 136 TVMGEYLAGSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRR 195

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           +FP+ Y  FS   F +R R+   HN L+ +   +DGIKTGYT  SG+N+V+S    +  +
Sbjct: 196 DFPEEYALFSQCSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHL 255

Query: 264 VAVVMGMPTSQERDQKALELITSF 287
           V VV+G  ++ +RD +  +L+T F
Sbjct: 256 VGVVLGAGSAGQRDGQMAKLLTRF 279


>gi|229586661|ref|YP_002845162.1| Penicillin-binding protein dacF precursor [Rickettsia africae
           ESF-5]
 gi|228021711|gb|ACP53419.1| Penicillin-binding protein dacF precursor [Rickettsia africae
           ESF-5]
          Length = 306

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 98/278 (35%), Positives = 157/278 (56%), Gaps = 7/278 (2%)

Query: 30  LMGKILFLSIIMISMASELHA------KPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTK 82
           L+  I  ++     ++    A       P  +S+VID    ++      + R YPASLTK
Sbjct: 6   LLPYIFVVTFFFAPISEAKKAVKNTPKPPVQTSLVIDAKSGKVLQAHNSQIRIYPASLTK 65

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MTLY++FE +++ KL L+ ++ VS  A+   P KL LK     T  + I  LI +SAND
Sbjct: 66  LMTLYLMFEAIEAGKLPLDKKLLVSAKASKMPPCKLGLKAGETITVREAINGLIIKSAND 125

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            +    E + GSEK FA LM+ KAK++GM+NT +KNASG HD  Q TTARD A L + L+
Sbjct: 126 AAVTVAEGMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHDPLQQTTARDMAKLAMALK 185

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           +++P++Y  F+   F +R  ++  HN++       +G+KTG+   +G+N+VT+       
Sbjct: 186 RDYPKFYPLFAKTSFVFRGNVVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKS 245

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           ++AVV G  ++  RDQK + L+      K +  + + +
Sbjct: 246 LIAVVTGGKSAASRDQKMMGLLDQHFNIKPIVPKPSIK 283


>gi|306838136|ref|ZP_07470992.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NF 2653]
 gi|306406726|gb|EFM62949.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NF 2653]
          Length = 397

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 103/264 (39%), Positives = 160/264 (60%), Gaps = 6/264 (2%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMM 84
           R  +    + F + ++ +      A    S +V D +  +M G         PASL KMM
Sbjct: 7   RISRFFASVAFGTAVLCASG----AMASTSWVVFDADSGRMLGQDDASAQHAPASLAKMM 62

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TLY+ FE L++ +LH +  +P+SK AA++   KL+LK     +T   +  +I  SAND +
Sbjct: 63  TLYLTFEALKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAA 122

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-NQITTARDQAILGILLRK 203
           T  GE+++GSE  FA LM+ +A++IGM++TI+ N SGL    +Q+TTARD A+LG+ LR+
Sbjct: 123 TVMGEYLAGSEAAFARLMTQRARQIGMKSTIFANPSGLTASVSQLTTARDMAVLGMALRR 182

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           +FP+ Y  FS R F +R R+   HN L+ +   +DGIKTGYT  SG+N+V+S    +  +
Sbjct: 183 DFPEEYALFSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSSAYINNKHL 242

Query: 264 VAVVMGMPTSQERDQKALELITSF 287
           V VV+G  ++ +RD +  +L+T F
Sbjct: 243 VGVVLGAGSAGQRDGQMAKLLTRF 266


>gi|260549716|ref|ZP_05823933.1| penicillin-binding protein 6 [Acinetobacter sp. RUH2624]
 gi|260407233|gb|EEX00709.1| penicillin-binding protein 6 [Acinetobacter sp. RUH2624]
          Length = 382

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 88/321 (27%), Positives = 155/321 (48%), Gaps = 20/321 (6%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPK---YSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           + R   +   +L  S      A+ L A P+    S +++D    Q+   K  +E   PAS
Sbjct: 1   MTRKSAIAALLLLPSFSY--AATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPAS 58

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGILALI 136
           +TKMMT YII + L   +L  N ++ ++++A    +   S +Y+      T  + +  +I
Sbjct: 59  MTKMMTSYIIEQKLLKGELTENEKVRMNESAWCKGSSAESCMYVPLNGTATVLEMLRGII 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E I+G+E  FA LM+ +AK+IGM NT + N++GL  +   +TA+D A+
Sbjct: 119 IQSGNDASKAMAEHIAGNEGTFAHLMNQEAKRIGMTNTQFMNSTGLPAEGHYSTAKDMAV 178

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   + K+  +YY  +S ++F +      N N LL    ++DG+KTG+T  +G+ + TS 
Sbjct: 179 LAQHIIKDSSRYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSS 238

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFL-----------EKKTLKHQQTHRKDNLS 305
           +     +++V+ G  +  ER  +   L++               +   K +    K+N  
Sbjct: 239 KRGPMRLISVIFGTDSVNERANQTRALLSWGFANFETANVQPANQVLAKAKVWFGKENEV 298

Query: 306 STSLKKSLMIKKLKRTYSQFK 326
              L ++  +   K      K
Sbjct: 299 QIGLAENFNVTMPKGKAGGIK 319


>gi|114327736|ref|YP_744893.1| D-alanyl-D-alanine serine-type carboxypeptidase [Granulibacter
           bethesdensis CGDNIH1]
 gi|114315910|gb|ABI61970.1| D-alanyl-D-alanine serine-type carboxypeptidase [Granulibacter
           bethesdensis CGDNIH1]
          Length = 419

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/236 (31%), Positives = 126/236 (53%), Gaps = 2/236 (0%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++V+D N       K+ D    P+S+TK+MT YI++  L++ KL ++  +PVS+ A    
Sbjct: 76  AVVVDFNTGATLLDKEADVQMPPSSMTKLMTAYIVYGELKAGKLQMDQMLPVSEKAWRLQ 135

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            SK+++        E  I  +I  S ND      E I+GSE++F  LM+ KAK +G+ N+
Sbjct: 136 GSKMFVPYPGSVKVEDLIRGMIVDSGNDACIVLAEGIAGSEQQFVDLMNQKAKLLGLTNS 195

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            ++N +G+   N   + RD A L   + ++FP+YY + S + F+Y N    N N L+ K 
Sbjct: 196 NFENCTGMPSANHHMSVRDIATLARRIIQDFPEYYHFDSEKTFKYNNIEQQNRNPLVQKG 255

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              DG+KTG+T   G+ +  S       ++ VV G+ TS +R  ++  L+     +
Sbjct: 256 I-ADGLKTGHTDAGGYGVCASAERNKRRVILVVNGLTTSHQRASESERLLEWAFSQ 310


>gi|306843944|ref|ZP_07476539.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO1]
 gi|306275699|gb|EFM57423.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO1]
          Length = 397

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 103/264 (39%), Positives = 160/264 (60%), Gaps = 6/264 (2%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMM 84
           R  +    + F + ++ +      A    S +V D +  +M G         PASL KMM
Sbjct: 7   RISRFFASVAFGTAVLCASG----AMASTSWVVFDADSGRMLGQDDASAQHAPASLAKMM 62

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TLY+ FE L++ +LH +  +P+SK AA++   KL+LK     +T   +  +I  SAND +
Sbjct: 63  TLYLTFEALKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAA 122

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-NQITTARDQAILGILLRK 203
           T  GE+++GSE  FA LM+ +A++IGM++TI+ N SGL    +Q+TTARD A+LG+ LR+
Sbjct: 123 TVMGEYLAGSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRR 182

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           +FP+ Y  FS R F +R R+   HN L+ +   +DGIKTGYT  SG+N+V+S    +  +
Sbjct: 183 DFPEEYALFSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSSAYINNKHL 242

Query: 264 VAVVMGMPTSQERDQKALELITSF 287
           V VV+G  ++ +RD +  +L+T F
Sbjct: 243 VGVVLGAGSAGQRDGQMAKLLTRF 266


>gi|262277220|ref|ZP_06055013.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium HIMB114]
 gi|262224323|gb|EEY74782.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium HIMB114]
          Length = 378

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 88/300 (29%), Positives = 155/300 (51%), Gaps = 10/300 (3%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           ++ KI  +  + IS+ S         + +IDV   ++   K  ++   PAS+TK+MT  +
Sbjct: 1   MIKKIFIICFLFISVKSSALETSAKQAYLIDVLSGEVLFEKNKEQKISPASITKIMTAIV 60

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNP---SKLYLKEKTYFTTEQGILALITRSANDVST 145
            F+ ++   L L  +  VSK A   +    S +++      + E  +  +I  S ND   
Sbjct: 61  AFDLIKKGDLKLEEKFKVSKNAWRMSSKGFSSMFIMPNDRVSVENLLKGIIIVSGNDACI 120

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E I+G+E++F  +M+N A+KIG+ NT + N+SG++D N  +T  D + + I L  NF
Sbjct: 121 ALAEGIAGTEEEFVNMMNNMAEKIGLSNTRFANSSGIYDGNNYSTVEDISKMSIYLINNF 180

Query: 206 PQYYKYFSIRKFRYR-----NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           P  YKY+S +KF +           N N +L K    DGIKTGY  NSG+++  +++  D
Sbjct: 181 PNLYKYYSEKKFTWDRTGGAPITQGNRNPILYKDMGGDGIKTGYLNNSGYSLAATIKKND 240

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEK-KTLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
             I++VV G  +   R ++ + L++    +   LK  +  +   + + +LK+  +  +LK
Sbjct: 241 RRILSVVSGTDSKNARSRETVRLLSYAENRFDLLKINKIDKNYKIKTWNLKQKTVQLELK 300


>gi|293609746|ref|ZP_06692048.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828198|gb|EFF86561.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 397

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 81/279 (29%), Positives = 145/279 (51%), Gaps = 8/279 (2%)

Query: 18  PYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPK----YSSIVIDVNKNQMTGFKQ-D 72
            Y  + + R  +       L +   S A+ + + P      S +++D    Q+   K  +
Sbjct: 7   SYKILELPRMTRKSAIAALLLLPSFSYAATVLSAPPELNNKSYVLMDYETGQILASKNEN 66

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTE 129
           E   PAS+TKMMT YII + L   +L  N Q+ ++++A    + + S +Y+      T  
Sbjct: 67  EKLAPASMTKMMTSYIIEQKLLKGELTENEQVRMNESAWCKGSSSESCMYVPLNGTATVL 126

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           + +  +I +S ND S A  E I+G+E  FA +M+ +AK+IGM NT + N++G+  +   +
Sbjct: 127 EMLRGIIIQSGNDASKAMAEHIAGNEGTFAHMMNQEAKRIGMVNTQFINSTGMPAEGHYS 186

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
           TA+D A+L   + K+  +YY  +S ++F +      N N LL    ++DG+KTG+T  +G
Sbjct: 187 TAKDMAVLAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAG 246

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           + + TS +     +++V+ G P+  ER  +   L+    
Sbjct: 247 YCLTTSSKRGPMRLISVIFGTPSMSERADQTRTLLAWGF 285


>gi|269102681|ref|ZP_06155378.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162579|gb|EEZ41075.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 348

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 72/235 (30%), Positives = 124/235 (52%), Gaps = 5/235 (2%)

Query: 59  IDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN--- 114
           +D +  ++      +E   PASLTK+MT Y+  + ++   +  +  + +S+ A  +N   
Sbjct: 1   MDYHTGRVLVEHNANEKLNPASLTKLMTSYVAGQEMKQGNISKDDVVVISRNAWARNFHD 60

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            SK++++             LI +S ND S A  E ++GS+  F  LM++ AKK+ M N+
Sbjct: 61  SSKMFIEVGAEVPMMDLFRGLIIQSGNDASVAIAEHVAGSQDAFVGLMNSWAKKLNMNNS 120

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NK 233
            + NA GL   +  +T  D A+LG  L ++ P  Y  +S + F Y N    N N LL + 
Sbjct: 121 RFANAHGLDHDDLYSTPYDIALLGQALIRDLPDIYPLYSEKSFTYNNITQRNRNGLLHDS 180

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
             N+DG+KTGYT  +G+++ +S    D  ++AVVMG  + + R  ++ +L+    
Sbjct: 181 SMNVDGMKTGYTGGAGYSLASSATEGDMRLIAVVMGTKSPKIRQAESKQLLNYGF 235


>gi|34580546|ref|ZP_00142026.1| penicillin-binding protein dacF precursor [Rickettsia sibirica 246]
 gi|28261931|gb|EAA25435.1| penicillin-binding protein dacF precursor [Rickettsia sibirica 246]
          Length = 306

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 98/278 (35%), Positives = 157/278 (56%), Gaps = 7/278 (2%)

Query: 30  LMGKILFLSIIMISMASELHA------KPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTK 82
           L+  I  ++     ++    A       P  +S+VID    ++      + R YPASLTK
Sbjct: 6   LLPYIFVVTFFFAPISEAKKAVKNTPKPPVQTSLVIDAKSGKVLQAHNSQIRIYPASLTK 65

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MTLY++FE +++ KL L+ ++ VS  A+   P KL LK     T  + I  LI +SAND
Sbjct: 66  LMTLYLMFEAIEAGKLPLDKKLLVSAKASKMPPCKLGLKAGETITVREAINGLIIKSAND 125

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            +    E + GSEK FA LM+ KAK++GM+NT +KNASG HD  Q TTARD A L + L+
Sbjct: 126 AAVTVAEGMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHDPLQQTTARDMAKLAMALK 185

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           +++P++Y  F+   F +R  ++  HN++       +G+KTG+   +G+N+VT+       
Sbjct: 186 RDYPKFYPLFAKTSFVFRGNVVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKS 245

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           ++AVV G  ++  RDQK + L+      K +  + + +
Sbjct: 246 LIAVVTGGKSAASRDQKMMGLLDQHFNIKPIVPKPSIK 283


>gi|325122968|gb|ADY82491.1| D-ala-D-ala-carboxypeptidase [Acinetobacter calcoaceticus PHEA-2]
          Length = 382

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/272 (30%), Positives = 144/272 (52%), Gaps = 9/272 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPK---YSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           + R   +   +L  S      A+ L A P+    S +++D    Q+   K  +E   PAS
Sbjct: 1   MTRKSAIAALLLLPSFSY--AATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPAS 58

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGILALI 136
           +TKMMT YII + L   +L  N Q+ ++++A    + + S +Y+      T  + +  +I
Sbjct: 59  MTKMMTSYIIEQKLLKGELTENEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGII 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E I+G+E  FA +M+ +AK+IGM NT + N++G+  +   +TA+D A+
Sbjct: 119 IQSGNDASKAMAEHIAGNEGTFAHMMNQEAKRIGMVNTQFINSTGMPAEGHYSTAKDMAV 178

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   + K+  +YY  +S ++F +      N N LL    ++DG+KTG+T  +G+ + TS 
Sbjct: 179 LAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSS 238

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +     +++V+ G P+  ER  +   L+    
Sbjct: 239 KRGPMRLISVIFGTPSMSERADQTRTLLAWGF 270


>gi|225677145|ref|ZP_03788144.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590812|gb|EEH12040.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 368

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 83/274 (30%), Positives = 142/274 (51%), Gaps = 13/274 (4%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++V+D+  +        DE   P+S++K+MTLYI F+YL++  +H+  +  VS+ A  + 
Sbjct: 30  AVVLDLASDSFIFDHNSDEKMAPSSMSKLMTLYIAFDYLKAGIIHMEDKFRVSRKAWERR 89

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S ++LKE    T  + +  +   S ND      E I+GSE+ F   M+  A+ + + ++
Sbjct: 90  GSSMFLKEGQSVTVRELLEGITIVSGNDACITLAEGIAGSEENFVAEMNEVAQNLNLNDS 149

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            + N+SG  D++    A+D  +L   +  +FP+YY  FS +   Y   +  N N LL   
Sbjct: 150 HFVNSSGWPDEDHFMNAKDLVMLAKRIFTDFPEYYDLFSEQYLTYNEIVQKNKNLLLFHD 209

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
             +DG+KTGYT   G+ IV S +  D  I AVV G+ T +ER ++A  LI     + +L 
Sbjct: 210 IGVDGLKTGYTNAGGYGIVASAKRNDRRIFAVVNGLNTEKERIEEAKRLI-----QYSLN 264

Query: 295 HQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           H  T +          K  +++++   Y + KK+
Sbjct: 265 HFNTKKI-------FAKDSVVEEVNVLYGKDKKV 291


>gi|254505026|ref|ZP_05117177.1| D-alanyl-D-alanine carboxypeptidase superfamily [Labrenzia
           alexandrii DFL-11]
 gi|222441097|gb|EEE47776.1| D-alanyl-D-alanine carboxypeptidase superfamily [Labrenzia
           alexandrii DFL-11]
          Length = 299

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 99/254 (38%), Positives = 150/254 (59%), Gaps = 1/254 (0%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQS 95
            S+ ++S A     +  +S++V++    Q       D PR+PASLTKMMTLY++FE + S
Sbjct: 44  ASLPVVSYAPATAQERGFSALVLNAATGQELYAVNADAPRFPASLTKMMTLYMLFESVSS 103

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
            +  L++ + +S  AA+Q P+K+ LK  +  + EQ   AL  +SANDV  A  E ++GSE
Sbjct: 104 GENRLSSPLNISANAASQPPAKIGLKAGSTISVEQAARALAVKSANDVGVAVAENLAGSE 163

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             FA  M+ KA+ +G+  T + NA+GL D  Q+TTARD A LG+ L++ FPQY  Y+  +
Sbjct: 164 AAFAREMTQKARALGLSRTRFVNATGLPDPAQVTTARDMAKLGLALKRRFPQYASYYRAK 223

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
            F Y  R     N LL K+  +DG+KTGY R SG+N+V + R     ++ VV+G  +   
Sbjct: 224 SFTYNGRTFRATNNLLGKVQGVDGLKTGYVRMSGYNLVATARRGGKQLIVVVIGGQSETA 283

Query: 276 RDQKALELITSFLE 289
           RD +   LI +  +
Sbjct: 284 RDAEVTRLIEAHFQ 297


>gi|121602290|ref|YP_988886.1| D-alanyl-D-alanine carboxypeptidase [Bartonella bacilliformis
           KC583]
 gi|120614467|gb|ABM45068.1| D-alanyl-D-alanine carboxypeptidase [Bartonella bacilliformis
           KC583]
          Length = 448

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 123/275 (44%), Positives = 172/275 (62%), Gaps = 7/275 (2%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPK------YSSIVIDVNKNQMTGFKQDE-PRYP 77
           ++  Q   K     +I ++  S + A PK      Y++IVID N  +          RYP
Sbjct: 6   KKIAQFYKKTAIFLVIFVASYSWVEAAPKGVHADKYAAIVIDANTGKTLFQANATMRRYP 65

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTKMMTLY++FE +Q +++  NT IP+S  A+T+ P+K+ LK       E    ALIT
Sbjct: 66  ASLTKMMTLYMLFEAMQVRRVAPNTPIPISAYASTRPPTKIGLKTGQTIPVEAAAKALIT 125

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +SANDV+ A GE++ GSE+KFA +M+ KA+++GM NT + NASGL D    +TA+D AIL
Sbjct: 126 KSANDVAAAIGEYLGGSEQKFAQMMTVKARQLGMINTNFANASGLPDTRNYSTAQDLAIL 185

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
            + LR++FPQ YK F I+ F +  +II +HNKL+  M  +DGIKTGYT+ SG N+ TS+R
Sbjct: 186 SLALREHFPQQYKLFKIKSFVFHGKIINSHNKLVQTMKGVDGIKTGYTQMSGSNLATSMR 245

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
                IVAVVMG  +S ERD     L+  +L K +
Sbjct: 246 LGGRSIVAVVMGGKSSVERDIHMANLLNKYLPKAS 280


>gi|262278278|ref|ZP_06056063.1| D-Ala-D-Ala-carboxypeptidase [Acinetobacter calcoaceticus RUH2202]
 gi|262258629|gb|EEY77362.1| D-Ala-D-Ala-carboxypeptidase [Acinetobacter calcoaceticus RUH2202]
          Length = 382

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 83/272 (30%), Positives = 143/272 (52%), Gaps = 9/272 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPK---YSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           + R   +   +L  S      A+ L A P+    S +++D    Q+   K  +E   PAS
Sbjct: 1   MTRKSAIAALLLLPSFSY--AATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPAS 58

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGILALI 136
           +TKMMT YII + L    L  N Q+ ++++A    + + S +Y+      T  + +  +I
Sbjct: 59  MTKMMTSYIIEQKLLKGDLTENEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGII 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND S A  E I+G+E  FA +M+ +AK+IGM NT + N++G+  +   +TA+D A+
Sbjct: 119 IQSGNDASKAMAEHIAGNEGTFAHMMNQEAKRIGMVNTQFVNSTGMPAEGHYSTAKDMAV 178

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           L   + K+  +YY  +S ++F +      N N LL    ++DG+KTG+T  +G+ + TS 
Sbjct: 179 LAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSS 238

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +     +V+V+ G P+  ER  +   L+    
Sbjct: 239 KRGPMRLVSVIFGTPSMAERADQTRALLAWGF 270


>gi|238650925|ref|YP_002916781.1| penicillin-binding protein dacF precursor [Rickettsia peacockii
           str. Rustic]
 gi|238625023|gb|ACR47729.1| penicillin-binding protein dacF precursor [Rickettsia peacockii
           str. Rustic]
          Length = 306

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 97/278 (34%), Positives = 156/278 (56%), Gaps = 7/278 (2%)

Query: 30  LMGKILFLSIIMISMASELHA------KPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
           L+  I  ++     ++    A       P  +S+VID    ++      +   YPASLTK
Sbjct: 6   LLPYIFVVTFFFAPISEAKKAVKNTPKPPVQTSLVIDAKSGKVLQAHNSQIQIYPASLTK 65

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MTLY++FE +++ KL L+ ++ VS  A+   P KL LK     T  + I  LI +SAND
Sbjct: 66  LMTLYLMFEAIEAGKLPLDKKLLVSAKASKMPPCKLGLKAGETITVREAINGLIIKSAND 125

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            +    E + GSEK FA LM+ KAK++GM+NT +KNASG HD  Q TTARD A L + L+
Sbjct: 126 AAVTVAEGMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHDPLQQTTARDMAKLAMALK 185

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           +++P++Y  F+   F +R  ++  HN++       +G+KTG+   +G+N+VT+       
Sbjct: 186 RDYPKFYPLFAKTSFVFRGNVVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKS 245

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           ++AVV G  ++  RDQK + L+      K +  + + +
Sbjct: 246 LIAVVTGGKSAASRDQKMMGLLDQHFNIKPIVPKPSIK 283


>gi|225018728|ref|ZP_03707920.1| hypothetical protein CLOSTMETH_02678 [Clostridium methylpentosum
           DSM 5476]
 gi|224948456|gb|EEG29665.1| hypothetical protein CLOSTMETH_02678 [Clostridium methylpentosum
           DSM 5476]
          Length = 395

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/256 (29%), Positives = 137/256 (53%), Gaps = 5/256 (1%)

Query: 43  SMASELHAK-PKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           ++A+++ A  P  S I+++ +  ++      DE   PAS+TK+M + ++ E + +  + L
Sbjct: 34  TVAADISAGIPAKSYILMEASTGKVLSESNADEQMAPASITKIMVMLLLMERIDAGTVTL 93

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
           +  +  S+ A +   ++++L+     +    + A    SAND + A  E+++GSE+ FA 
Sbjct: 94  DDMVTTSEHANSMGGTQIWLEVGEQMSVNDLLKATAVNSANDAAVALAEYMAGSEEAFAE 153

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI--RKFR 218
           LM+ +AK++GM NT +KNA+GL     ++TARD A++   L K  P+  +Y SI     R
Sbjct: 154 LMNQRAKELGMVNTTFKNATGLDADGHLSTARDIALMTQELLK-HPKITEYTSIYMDSLR 212

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                + N NK++      +G+KTG T ++G  +  +       +++V MG  TS+ER Q
Sbjct: 213 DGTTGLVNTNKMVRFYEGCNGMKTGTTDDAGSCLSCTATRDGMTLISVSMGSTTSKERFQ 272

Query: 279 KALELITSFLEKKTLK 294
            A  L+       +L 
Sbjct: 273 SARTLLDHGFASYSLY 288


>gi|182678644|ref|YP_001832790.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182634527|gb|ACB95301.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 563

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 104/237 (43%), Positives = 149/237 (62%), Gaps = 1/237 (0%)

Query: 51  KPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
               ++IV+D N         + E R+PAS+TK+MTLY++FE L+   L L++ I VS  
Sbjct: 73  PASVAAIVVDANSGHTLYAHGEHELRHPASITKVMTLYLLFEQLEQGHLRLDSAIHVSPH 132

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           AA Q P+KL L   +  + E  I A++TRSAND++ A  E + G E+ FA +M+ KA  +
Sbjct: 133 AAAQKPTKLGLHAGSSISVEDAIRAVVTRSANDMAVAIAETVGGDEETFAGMMTRKAHML 192

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM  T ++NASGL +  Q+TTA D AILG  ++  FP+YY YFS   F Y  + I NHN 
Sbjct: 193 GMSRTHFENASGLPNDAQVTTAHDLAILGRAIQDRFPRYYPYFSTHVFHYAGQEIRNHNH 252

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           LL+++  +DGIKTGYTR SGFN++TS++     IVA V+G  ++  RD+    LI +
Sbjct: 253 LLDQVEGMDGIKTGYTRASGFNLLTSVKRGGHSIVAAVLGGVSAGARDRIMARLIEN 309


>gi|251780585|ref|ZP_04823505.1| penicillin-binding protein DacF [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243084900|gb|EES50790.1| penicillin-binding protein DacF [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 396

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 84/321 (26%), Positives = 156/321 (48%), Gaps = 24/321 (7%)

Query: 24  IQRNIQLMGKILFLSIIMISMAS--------ELHAKP----KYSSIVIDVNKNQMTGFKQ 71
           I+R I     I  L+II++ + +        ++ A+       S+++I+    ++   K 
Sbjct: 5   IKRIISF-TLIFVLTIILMPIGAVNASMLEDQVKAEGMNVEAKSALLIEPTTGKVVYEKN 63

Query: 72  -DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
            DE   PAS+TK+MT+ +  E + + K+ L+ ++  S+ A     S + L      + E+
Sbjct: 64  PDEKFAPASVTKIMTMLLTMEAVDNGKIKLDDKVTCSENAKKMGGSTMLLDTGEIRSVEE 123

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  +   S ND + A  E++ G+E  F  LM+ +A+++GM+NT++KN +GL     ++T
Sbjct: 124 LLKGVAIASGNDAAVALAEYLGGTESDFVGLMNKRAQELGMKNTVFKNCNGLPADGHLST 183

Query: 191 ARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
           ARD +++ I L K  P   KY      SI + R     + NHNKL+      DG+KTG+T
Sbjct: 184 ARDISLMSIELLK-HPTILKYTGTYMDSISEGRKSPIELVNHNKLVRFFEGCDGLKTGFT 242

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLS 305
             + + I  +       ++ V+MG PT + R++ A  L+     K     +   + +++ 
Sbjct: 243 NEAKYCISATATRNGVRMLTVIMGAPTYKIRNRDAGILLNHGFSKYE-GKKIVSKDEDVE 301

Query: 306 STSLKKS---LMIKKLKRTYS 323
              + K      + K K   +
Sbjct: 302 KVLMDKQTDRFFMAKAKDDLT 322


>gi|225629999|ref|YP_002726790.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia sp. wRi]
 gi|225591980|gb|ACN94999.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia sp. wRi]
          Length = 368

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 81/261 (31%), Positives = 134/261 (51%), Gaps = 5/261 (1%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++V+D+  +        DE   P+S++K+MTLYI F+YL++  +H+  +  VS+ A  + 
Sbjct: 30  AVVLDLASDSFIFDHNSDEKMAPSSMSKLMTLYIAFDYLKAGIIHMEDKFRVSRKAWERK 89

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S ++LKE  + T  + +  +   S ND      E I+GSE+ F   M+  A+ + + ++
Sbjct: 90  GSSMFLKEGQFVTVRELLEGITIVSGNDACITLAEGIAGSEENFVAEMNEVAQNLNLNDS 149

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            + N+SG  D +   +A+D  +L   +  +FP+YY  FS +   Y   +  N N LL   
Sbjct: 150 HFVNSSGWPDGDHFMSAKDLVMLAKRIFTDFPEYYDLFSEQYLTYNEIVQKNKNLLLFHD 209

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL----ITSFLEK 290
             +DG+KTGYT   G+ IV S +  D  I AVV G+ T +ER ++A  L    +  F  K
Sbjct: 210 IGVDGLKTGYTNAGGYGIVASAKRNDRRIFAVVNGLNTEKERIEEAKRLIQYSLNHFNTK 269

Query: 291 KTLKHQQTHRKDNLSSTSLKK 311
           K         + N+     KK
Sbjct: 270 KIFAQDSVVEEVNVLYGKDKK 290


>gi|217977547|ref|YP_002361694.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris
           BL2]
 gi|217502923|gb|ACK50332.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris
           BL2]
          Length = 536

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 2/243 (0%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
            L A+   S +++D+    +       +P +PASLTK+MT+Y+  + ++  ++ L+T + 
Sbjct: 39  PLRAEAAPS-LLMDLASGAVLYEDHATQPWFPASLTKLMTVYVALQAVRDHRISLDTPLV 97

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           VS+ AA   PSK+  +  T  T +  +  L+ +SANDVS    E +SGS + FA  M+  
Sbjct: 98  VSRRAAAMPPSKMGFRPGTMVTLDTALKILMVKSANDVSVTVAEGVSGSVEAFAAEMNAT 157

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
           A  +GMQ + + N +GL D    ++ARD A+L   L   FP++   FSI       R++ 
Sbjct: 158 AAALGMQQSHFVNPNGLPDPQHYSSARDLALLARALYVTFPEHADLFSIGALEIGGRVMA 217

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           NHN LL +   +DG+KTG+T  +GFN+V S       +VAV++G P    R  KA  L  
Sbjct: 218 NHNNLLGRYPGVDGMKTGFTCAAGFNVVASATQGGRKLVAVILGAPNVALRTVKAAALFD 277

Query: 286 SFL 288
              
Sbjct: 278 RGF 280


>gi|260434140|ref|ZP_05788111.1| beta-lactamase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417968|gb|EEX11227.1| beta-lactamase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 388

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 127/244 (52%), Gaps = 6/244 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++ V+D     +   K  D+P  PAS++K+MTLY+ FE L+  +L L+ ++PVS+ A 
Sbjct: 28  ARAAYVMDQTTGTVLLSKNADQPLPPASMSKLMTLYVAFEALRDGRLTLDEKLPVSEHAM 87

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
           +   S ++L  +     E  +  +I  S ND      E +S  G+E  FA  M+ +AK++
Sbjct: 88  SYGGSTMFLNTQDRVRVEDLLRGIIVLSGNDACVVIAEALSPDGTEAGFARYMTQRAKQM 147

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR---IITN 226
           GM N+ + N++G      + + +D AIL   L  +FP+YY  F+   F +  R    + N
Sbjct: 148 GMNNSTFANSNGWPAAGHMMSVKDLAILADRLITDFPEYYPLFAEETFEFDGRAPSNVNN 207

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            N LL      DG+KTG+T+ +G+ +V S +  D  ++ V+ G+     R ++A  ++  
Sbjct: 208 RNPLLKLDIGADGLKTGHTQEAGYGLVGSAKQGDRRVIFVLSGLENVARRAEEAEAVVNW 267

Query: 287 FLEK 290
               
Sbjct: 268 SFRN 271


>gi|331089686|ref|ZP_08338584.1| hypothetical protein HMPREF1025_02167 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330404521|gb|EGG84064.1| hypothetical protein HMPREF1025_02167 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 434

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 79/279 (28%), Positives = 149/279 (53%), Gaps = 11/279 (3%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+++++ +   +   +  D  R PAS+TK+MT+ +IF+ ++SKK+ L  ++PVS+ AA
Sbjct: 77  APSALLMEASTGTVLFEQDADTKRPPASVTKIMTMLLIFDAVESKKISLEDKVPVSEFAA 136

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S+++L+     T +  +  +   SAND   A  E+ISGSE+ F   M+ +AK +GM
Sbjct: 137 SMGGSQVFLETGETQTVDTMLKCISIASANDACVAMAEYISGSEEAFVQEMNKRAKALGM 196

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-------- 223
            NT + N +GL  +  +TTARD A++   L   +PQ ++Y         +          
Sbjct: 197 HNTNFVNCNGLDAQGHVTTARDIALMSRELITKYPQIHEYAMTWMENITHETKKGTSEFG 256

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           +TN NKL+ +     G+KTG T  + F +  + +  D  ++AVVM   TS+ER   A+++
Sbjct: 257 LTNTNKLVRQYEYATGLKTGSTGEAKFCVSATGKKDDVELIAVVMAADTSKERFADAVKM 316

Query: 284 ITSFLEKKTLKHQQTHRKDNLSSTS--LKKSLMIKKLKR 320
           +     K  +   +   K   +     +++++ +++ ++
Sbjct: 317 MNYGFGKCQVYSDEKPMKTKYAVVKNGVEENIEVERGEK 355


>gi|225626417|ref|ZP_03784456.1| cobalamin synthesis protein P47K [Brucella ceti str. Cudo]
 gi|260169446|ref|ZP_05756257.1| cobalamin synthesis protein P47K [Brucella sp. F5/99]
 gi|225618074|gb|EEH15117.1| cobalamin synthesis protein P47K [Brucella ceti str. Cudo]
          Length = 635

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 94/301 (31%), Positives = 159/301 (52%), Gaps = 19/301 (6%)

Query: 33  KILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYII 89
           +I F ++    +A S   A P   SI +DV   ++   +QD  +  YPASLTKMMT Y+ 
Sbjct: 7   RIWFAAVAFSGIALSGAAANP---SIAVDVATGKV-YEQQDAFQRWYPASLTKMMTAYVT 62

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           F  LQS ++ L + + ++  A+ + PSK+  K  +  T +  +  ++ +SANDVS A  E
Sbjct: 63  FRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVAE 122

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            + G+E  F   M+ +A+++GM  + + N +GLHD N  TTARD A+  + LR+ FPQY 
Sbjct: 123 AVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVFAVQLRREFPQYA 182

Query: 210 KYFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            YF+          ++  N+N LL +    DG+KTG+   SGFN+  S       ++A+V
Sbjct: 183 HYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRTVLAIV 242

Query: 268 MGMPTSQERDQKALELITSFLEKK--------TLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
           +G    + R  +A +++T     +        TL+  QT   +   +  ++K++  ++  
Sbjct: 243 LGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQ--AVDMRKAICSEQAS 300

Query: 320 R 320
            
Sbjct: 301 E 301


>gi|326202106|ref|ZP_08191976.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium papyrosolvens
           DSM 2782]
 gi|325987901|gb|EGD48727.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium papyrosolvens
           DSM 2782]
          Length = 408

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 76/263 (28%), Positives = 140/263 (53%), Gaps = 5/263 (1%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++++D    ++   K    R   AS+TK+MT+ +I E + S +   + ++ VS+ +A
Sbjct: 58  AKSAVLMDAASGKVLSEKNSHERLAIASVTKVMTMLLIMEAIDSGRFTFDDKVSVSEYSA 117

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S+ Y++    FT  + + AL   S+NDV+ A  E +SGSE+ F   M+NKA+ +GM
Sbjct: 118 GMGGSQAYMEPGEEFTVTEMMNALAIHSSNDVAVALAEKVSGSEETFVTDMNNKAQALGM 177

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--ITNHNK 229
           ++T + + +GL+D    ++A D A++   L    P+  ++       +RN    + N NK
Sbjct: 178 KDTKFMDCTGLNDDG-YSSAHDVALMSRELVMKHPKVLQFTGKWHDTFRNGTFDLYNTNK 236

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           L+    N DG+KTG+T  +GFN+  + R  +  +V+VV+G P S  R  ++ +L+     
Sbjct: 237 LVKFYANCDGLKTGFTSKAGFNLSATTRRNNLRLVSVVLGEPDSNTRFAESRKLLDYGFA 296

Query: 290 KKTLKHQQTHRKDNLSSTSLKKS 312
              + +    R + + +  +KK 
Sbjct: 297 NYEVINLD-KRGNVVGNIPVKKG 318


>gi|76818571|ref|YP_335397.1| peptidase [Burkholderia pseudomallei 1710b]
 gi|126456879|ref|YP_001075694.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106a]
 gi|242313141|ref|ZP_04812158.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106b]
 gi|254265595|ref|ZP_04956460.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1710a]
 gi|76583044|gb|ABA52518.1| family S11 unassigned peptidase [Burkholderia pseudomallei 1710b]
 gi|126230647|gb|ABN94060.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106a]
 gi|242136380|gb|EES22783.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106b]
 gi|254216597|gb|EET05982.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1710a]
          Length = 333

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 72/244 (29%), Positives = 127/244 (52%), Gaps = 10/244 (4%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S +V+D +  +  G    D  R PASLTK+MT Y+ F+ L+   L  +  + V+      
Sbjct: 58  SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERDALRWDDTVTVAADDIAS 117

Query: 113 --QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             ++ +++YL           +  LI  SAND +    + I GS   FA +M++ A+++G
Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ + + SG+   +  +TA D +IL   L ++FP +Y + S R F Y     TN N+L
Sbjct: 178 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRY--KD----DPIVAVVMGMPTSQERDQKALELI 284
           L    ++DG+KTG+T  +G+ +V + +           ++AV++G PT ++R   A  L+
Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALL 297

Query: 285 TSFL 288
               
Sbjct: 298 DQGF 301


>gi|90420704|ref|ZP_01228610.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90334995|gb|EAS48756.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 313

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 96/251 (38%), Positives = 142/251 (56%), Gaps = 1/251 (0%)

Query: 39  IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKK 97
           +   +    +      S++V+D    +       +  RYPASLTKMMTLY++FE +++ +
Sbjct: 46  VGAATATPGVAEVRGESTLVLDFASGRTLYEDAADGLRYPASLTKMMTLYLLFETIEAGR 105

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           L +++++ VS+ AA+Q PSKL LK            A+  +SANDV+T   E + GSE  
Sbjct: 106 LSMSSELRVSENAASQPPSKLGLKAGETIRVADAAQAIAVKSANDVATVIAENLGGSEAD 165

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           FA  M+ KA+ +GM  T + NASGL D+ QI+TARD A LG  L   FP Y   F+   F
Sbjct: 166 FANAMTAKARALGMSRTRFVNASGLPDEGQISTARDMATLGRALLNRFPAYASLFTRTGF 225

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
            Y  R     NKLL  +  +DG+KTGY R++GF++  +   +   I+ VVMG  T +ER+
Sbjct: 226 DYNGRHYNATNKLLGSVEGVDGLKTGYIRDAGFHLAATATRRGRRIIVVVMGGRTGRERN 285

Query: 278 QKALELITSFL 288
            +   LI  +L
Sbjct: 286 ARVEALIDQYL 296


>gi|225018712|ref|ZP_03707904.1| hypothetical protein CLOSTMETH_02662 [Clostridium methylpentosum
           DSM 5476]
 gi|224948440|gb|EEG29649.1| hypothetical protein CLOSTMETH_02662 [Clostridium methylpentosum
           DSM 5476]
          Length = 390

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 67/261 (25%), Positives = 122/261 (46%), Gaps = 16/261 (6%)

Query: 43  SMASELHAKP---KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKL 98
            + + + A+P     ++I+I+ N  ++   K  + + P AS TK+MT  I  E       
Sbjct: 19  CIPASVQAEPGVSAKAAILIEANSGKILYQKNAQQKLPMASTTKIMTSLIALESG----- 73

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
           +L+    V + A     S + L+     T       ++ +S ND + A    ++GS + F
Sbjct: 74  NLDEWFTVDENAIKVEGSSMGLQAGDQVTMRTLAYGMLLQSGNDAANAVAVKLAGSAEAF 133

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSIRK 216
           A  M+ +A++IGM N+ +   SGL ++   +TA D A L     +N  F +    +  + 
Sbjct: 134 AEKMNERAQQIGMANSHFVTPSGLDNEEHYSTAEDMAKLARTALQNDGFREICSTYQTK- 192

Query: 217 FRYRN----RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
             Y N    R +TNHN+LL +     G+KTG+T+ SG  +V++       ++AV +  P+
Sbjct: 193 LEYGNPPYTRWMTNHNRLLKEYEGTIGVKTGFTKKSGRCLVSAAERDGVRLIAVTLNAPS 252

Query: 273 SQERDQKALELITSFLEKKTL 293
                +   +   S ++   L
Sbjct: 253 DWSDHKAMFDYGFSVVQPVKL 273


>gi|86356590|ref|YP_468482.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42]
 gi|86280692|gb|ABC89755.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42]
          Length = 419

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 97/254 (38%), Positives = 160/254 (62%), Gaps = 1/254 (0%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKL 98
           + +++++ L A    +S+++D    ++   +  +   +PASLTKMMTLY+ FE L+  K+
Sbjct: 3   VTLAVSAPLAALAGSASLILDARTGKVLASENADTLNHPASLTKMMTLYLTFEALKRGKI 62

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
             +T I +SK AA + P+KL +K     T  + +  +I +SAND + A  E + GSE  F
Sbjct: 63  AWDTPIKMSKYAAARPPTKLGVKAGGTITVREAVYGMIVKSANDAAAAMAETLGGSESGF 122

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           A +M+ KA+++GM  T++ NASGL + +Q+TTARD + LG+ L KNFP  Y+ FS+  F 
Sbjct: 123 ARMMTAKARQLGMSRTVFVNASGLPNSSQVTTARDMSTLGVALMKNFPNEYRLFSMASFN 182

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +R + +  HN L+ +   +DGIKTGYT  SGFN+V+++R  +  +V VV+G  T++ RD 
Sbjct: 183 FRGKTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVVGVVLGGRTARSRDA 242

Query: 279 KALELITSFLEKKT 292
           +   L+  +L + +
Sbjct: 243 RMEALLDRYLGRAS 256


>gi|51473579|ref|YP_067336.1| D-alanyl-D-alanine carboxypeptidase. [Rickettsia typhi str.
           Wilmington]
 gi|51459891|gb|AAU03854.1| D-alanyl-D-alanine carboxypeptidase [Rickettsia typhi str.
           Wilmington]
          Length = 306

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 110/300 (36%), Positives = 173/300 (57%), Gaps = 7/300 (2%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQDEPR-YPAS 79
           +R +     I+      IS A ++  K    P  +S+VID    ++      + R YPAS
Sbjct: 3   RRFLLPYIFIVIFCFAPISEAKKIVKKTNKYPVQTSLVIDAKNGKVLQAHNAQVRIYPAS 62

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LTK+MTLY++FE ++S KL L+ ++ VS  A+     KL L+     T    I  LI +S
Sbjct: 63  LTKLMTLYLMFEAIESGKLSLDKKLLVSAKASKMPHCKLGLRAGDNITVRDAINGLIIKS 122

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           ANDV+    E + GSEK FA LM+ KAK +GM++T +KNASGLHD  Q TTARD A L I
Sbjct: 123 ANDVAVTVAEGMKGSEKSFAHLMNVKAKTLGMKHTFFKNASGLHDPLQQTTARDIAKLAI 182

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            L++++P+YY +FS   F +R  +I  HN +       +G+KTG+   +G+N+VT+   K
Sbjct: 183 ALKRDYPKYYPFFSKTSFVFRGNVINGHNSVTKHYQGAEGMKTGFHTPAGYNLVTTASRK 242

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR--KDNLSSTSLKKSLMIKK 317
           +  ++AV+ G  ++  RDQK + L+      KT+ ++ + +   +N ++T  K  ++ +K
Sbjct: 243 NKSLIAVITGAKSAASRDQKMIRLLDHHFGVKTINYKPSIKLASNNKANTKAKSKIIKRK 302


>gi|255524154|ref|ZP_05391114.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           carboxidivorans P7]
 gi|296186612|ref|ZP_06855014.1| putative D-alanyl-D-alanine carboxypeptidase [Clostridium
           carboxidivorans P7]
 gi|255512139|gb|EET88419.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           carboxidivorans P7]
 gi|296048649|gb|EFG88081.1| putative D-alanyl-D-alanine carboxypeptidase [Clostridium
           carboxidivorans P7]
          Length = 398

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 82/281 (29%), Positives = 136/281 (48%), Gaps = 9/281 (3%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+++++ +  ++   K   E   PAS+TK+MT+ +  E + S K+ L+ ++ +S+ A 
Sbjct: 47  AKSALLMEPSNGKIIYEKNCHEKLAPASVTKVMTMLLTMENVDSGKIKLSDKVTISENAK 106

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S + L      T E+ I  +   S ND + A  E++ GSE+ F  LM+ +A K+GM
Sbjct: 107 KMGGSSMLLDTGEVRTVEELIKGIGIASGNDAAVAMAEYLGGSEEGFVKLMNERAHKLGM 166

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITN 226
           ++T + N +GL     +TTA D AI+   L K  P   KY      +I + R     + N
Sbjct: 167 KDTNFNNCTGLSSPGHVTTAYDIAIMSRELLK-HPDILKYTGTYMETISEGRKSPIGLVN 225

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           HNKL+      DG+KTG+T  + + I  +       ++AV+MG PT + R++ A  L+  
Sbjct: 226 HNKLVRFFKGCDGLKTGFTDEAKYCISATATRDGVRMLAVIMGSPTYKVRNKDASMLMNY 285

Query: 287 FLEKKTLKHQQTHRKDNLSSTSLKKS--LMIKKLKRTYSQF 325
              K   K      KD       +K     I K +  +S  
Sbjct: 286 GFSKYENKKLIEKGKDVEKVNLNRKGDRFFIAKAQDDFSVV 326


>gi|51892953|ref|YP_075644.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51856642|dbj|BAD40800.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 403

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 130/247 (52%), Gaps = 9/247 (3%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+++    ++   K   E R PAS+TK+MTL + F+ ++  K+ L   + +S+ A  Q
Sbjct: 50  SAILMEPLSGRVIYQKNAHERRNPASVTKIMTLIVAFDAIRDGKVSLKDPVTISEEAKRQ 109

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             + ++      F+ E+ +L++   SAND + A  E ++GS   F  LM+ KAK++GM +
Sbjct: 110 PGTTIFADVGETFSLEELLLSVAVGSANDAAVAVAEHVAGSVDAFVALMNKKAKELGMND 169

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI--------RKFRYRNRIIT 225
           T + N +GL  +   +TA D A++      ++P+  K  +I         +       + 
Sbjct: 170 TQFMNPTGLSAEGHYSTAYDIALMSRHAVLHYPELVKLTAIYGAELNVPWRKNGPKFQLW 229

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N+NKLL      DG+KTG+T+ +G+ +  +    +  ++AVVMG  ++++R+ +   L+ 
Sbjct: 230 NNNKLLTWYPGADGLKTGWTQAAGYCLAATAVQNNTRMIAVVMGAESAKQRNIEVARLLD 289

Query: 286 SFLEKKT 292
                 T
Sbjct: 290 YGFANYT 296


>gi|42520006|ref|NP_965921.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|99035928|ref|ZP_01314975.1| hypothetical protein Wendoof_01000183 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|42409743|gb|AAS13855.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 368

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/254 (31%), Positives = 131/254 (51%), Gaps = 5/254 (1%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++V+D+  +        DE   P+S++K+MTLYI F+YL++  +H+  +  VS+ A  + 
Sbjct: 30  AVVLDLASDSFIFDHNSDEKMAPSSMSKLMTLYIAFDYLKAGIIHMEDKFRVSRKAWERR 89

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S ++LKE    T  + +  +   S ND      E I+GSE+ F   M+  A+ + + ++
Sbjct: 90  GSSMFLKEGQSVTVRELLEGITIVSGNDACITLAEGIAGSEENFVAEMNEVAQNLNLNDS 149

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            + N+SG  D++    A+D  +L   +  +FP+YY  FS +   Y   +  N N LL   
Sbjct: 150 HFVNSSGWPDEDHFMNAKDLVMLAKRIFTDFPEYYDLFSEQYLTYNEIVQKNKNLLLFHD 209

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL----ITSFLEK 290
             +DG+KTGYT   G+ IV S +  D  I AVV G+ T +ER ++A  L    +  F  K
Sbjct: 210 IGVDGLKTGYTNAGGYGIVASAKRNDRRIFAVVNGLNTEKERIEEAKRLIQYSLNHFNTK 269

Query: 291 KTLKHQQTHRKDNL 304
           K         + N+
Sbjct: 270 KIFVKDSVVEEVNV 283


>gi|167922874|ref|ZP_02509965.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei BCC215]
          Length = 315

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 72/244 (29%), Positives = 127/244 (52%), Gaps = 10/244 (4%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S +V+D +  +  G    D  R PASLTK+MT Y+ F+ L+   L  +  + V+      
Sbjct: 51  SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERDALRWDDTVTVAADDIAS 110

Query: 113 --QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             ++ +++YL           +  LI  SAND +    + I GS   FA +M++ A+++G
Sbjct: 111 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 170

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ + + SG+   +  +TA D +IL   L ++FP +Y + S R F Y     TN N+L
Sbjct: 171 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 230

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRY--KD----DPIVAVVMGMPTSQERDQKALELI 284
           L    ++DG+KTG+T  +G+ +V + +           ++AV++G PT ++R   A  L+
Sbjct: 231 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALL 290

Query: 285 TSFL 288
               
Sbjct: 291 DQGF 294


>gi|167915042|ref|ZP_02502133.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 112]
          Length = 333

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 72/244 (29%), Positives = 127/244 (52%), Gaps = 10/244 (4%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S +V+D +  +  G    D  R PASLTK+MT Y+ F+ L+   L  +  + V+      
Sbjct: 58  SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERDALRWDDTVTVAADDIAS 117

Query: 113 --QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             ++ +++YL           +  LI  SAND +    + I GS   FA +M++ A+++G
Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ + + SG+   +  +TA D +IL   L ++FP +Y + S R F Y     TN N+L
Sbjct: 178 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRY--KD----DPIVAVVMGMPTSQERDQKALELI 284
           L    ++DG+KTG+T  +G+ +V + +           ++AV++G PT ++R   A  L+
Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALL 297

Query: 285 TSFL 288
               
Sbjct: 298 DQGF 301


>gi|167582899|ref|ZP_02375773.1| family S11 unassigned peptidase [Burkholderia thailandensis TXDOH]
          Length = 333

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 127/246 (51%), Gaps = 10/246 (4%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S +V+D +  +  G    D  R PASLTK+MT Y+ F+ L+   L  +  + V+    
Sbjct: 56  AVSWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERAALRWDETVTVAADDI 115

Query: 112 T---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
               ++ +++YL           +  LI  SAND +    + I GS   FA LM++ A++
Sbjct: 116 ASVGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATLMNDTARR 175

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           +GM+++ + + SG+   +  +TA D +IL   L ++FP +Y + S R F Y     TN N
Sbjct: 176 LGMRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFSKTNKN 235

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRY--KD----DPIVAVVMGMPTSQERDQKALE 282
           +LL    ++DG+KTG+T  +G+ +V + +           ++AV++G PT ++R   A  
Sbjct: 236 RLLGADPSVDGMKTGHTNAAGWCMVVTAKRPIGGARAPHRVIAVLLGEPTEKQRLADARA 295

Query: 283 LITSFL 288
           L+    
Sbjct: 296 LLDQGF 301


>gi|254456113|ref|ZP_05069542.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter
           sp. HTCC7211]
 gi|207083115|gb|EDZ60541.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter
           sp. HTCC7211]
          Length = 383

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 83/268 (30%), Positives = 145/268 (54%), Gaps = 9/268 (3%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
           + L + + + A+        ++I++D + +++   K  D   +PAS+TK+MT  I F+ +
Sbjct: 9   IILCLPLTNFANANFDVKARTAILLDYHSDEILYEKDPDRKIFPASMTKIMTSIIAFDLI 68

Query: 94  QSKKLHLNTQIPVSKTAAT---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           ++ +L L+ +  VS+ A        S +++      + E  +  +I  S ND   A  E 
Sbjct: 69  KNGELSLDDKFIVSENAWRLSESGYSSMFIMVGDQISVENLLKGIIISSGNDACVALAEG 128

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           I+G+E +FAILM+ KAK+IGM+NT + N+SG++  + ++T RD  I+   L KN+P YYK
Sbjct: 129 IAGTEDEFAILMTEKAKEIGMENTNFSNSSGINSPDNLSTVRDIMIMSKYLIKNYPDYYK 188

Query: 211 YFSIRKFRY-----RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           YF  +KF +           N N LL K  + DGIKTGY     +++ +S+      ++A
Sbjct: 189 YFKEKKFTWDRTGGDPITQGNRNPLLYKNLDADGIKTGYLSYEKYSLASSINRNGRRLIA 248

Query: 266 VVMGMPTSQERDQKALELITSFLEKKTL 293
           V  G  +   R +++++L+T  L    L
Sbjct: 249 VGSGFNSKNSRSRESIKLLTYGLTNYDL 276


>gi|254459679|ref|ZP_05073095.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacterales bacterium
           HTCC2083]
 gi|206676268|gb|EDZ40755.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 392

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 82/275 (29%), Positives = 141/275 (51%), Gaps = 7/275 (2%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMM 84
           R++      L + +I+   A     +   S+ VID     +   K  +    PAS++KMM
Sbjct: 2   RHLITTIAALVVPLILALPAGAFETRAA-SAFVIDQTTGTVLLNKNADQMLPPASMSKMM 60

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TLYI FE L+  +L L+ ++PVSK A     S ++L      T E  I  +I  S ND  
Sbjct: 61  TLYITFEALRDGRLVLDEKLPVSKHAMAYGGSTMFLDTTDRITVEDLIRGIIVLSGNDAC 120

Query: 145 TAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
               E +S  G+E  FA  M+ +A+++GM N+ + N++G        + RD A+L   + 
Sbjct: 121 AVIAEALSPDGTEAGFARFMTQRAQQLGMTNSTFSNSNGWPQAGHRMSMRDLALLANRVI 180

Query: 203 KNFPQYYKYFSIRKFRYRNR---IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            +FP +Y  FS R+F++  R      N N LL+     DG+KTG+T+ +G+ +V S + +
Sbjct: 181 TDFPSFYPLFSEREFKFDGRAPQNTRNRNPLLSLGIGADGLKTGHTQEAGYGLVGSAKQR 240

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
              ++ V+ G+ ++Q R ++A  ++     +  +K
Sbjct: 241 GRRVIFVISGLQSAQARAEEAESIVNWAFRQFAVK 275


>gi|312144315|ref|YP_003995761.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halanaerobium sp.
           'sapolanicus']
 gi|311904966|gb|ADQ15407.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halanaerobium sp.
           'sapolanicus']
          Length = 375

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 156/293 (53%), Gaps = 9/293 (3%)

Query: 27  NIQLMGKILFLSIIMISMASELHA--KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           N + +  IL  +++     + + A      S+I+++    Q+   K  D    PAS+TK+
Sbjct: 2   NKKHIVFILIFTMVFSLAGTYVSAFDVDMESAILMEAETGQVLFSKNADRKLPPASMTKI 61

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           M L I  E L+   + L+ ++ +S+ AA+   S+++L   T    E+ + A+   S ND 
Sbjct: 62  MPLLIAMEKLEEGAISLDDKVTISRYAASMGGSQIFLAANTQVELEKLLKAVTIASGNDA 121

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           S A GE+I+G+   F  +M+ +A+++GM+NT + N++GL D +  +TARD AI+   L K
Sbjct: 122 SVAIGEYIAGTYSNFIAMMNRRAEELGMENTNFSNSTGLPDPDNYSTARDIAIMSRELAK 181

Query: 204 NFPQYYKYFSIRKFRY----RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            +P   ++ SI         R  ++ N N+L+N   ++DG+KTG+TR +GF +  + +  
Sbjct: 182 -YPLVLQWGSIWTENIQLPGREAMLVNTNRLINVYPSMDGLKTGHTREAGFCLSATAQKG 240

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           D  +++VVM   T ++R+   + L+       + K +     D + +  + +S
Sbjct: 241 DTRLISVVMQGDTLEQREDTTIRLLDYGFNAFS-KREVATEGDQIQNIPVSQS 292


>gi|163732221|ref|ZP_02139667.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter litoralis Och 149]
 gi|161394519|gb|EDQ18842.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter litoralis Och 149]
          Length = 389

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/276 (28%), Positives = 144/276 (52%), Gaps = 12/276 (4%)

Query: 31  MGKILFLSIIMISMASELHA--KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLY 87
           M +I+  + ++++      A      ++ V+D     +   K  D P  PAS++K+MTLY
Sbjct: 1   MFRIVLAAFVLVASTLSAAAFETRAGAAFVMDQTTGTVLLNKNADAPLPPASMSKLMTLY 60

Query: 88  IIFEYLQSKK----LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           + FE ++  K    L LN  +PVS+ A +   S ++L+     + E  +  +I  S ND 
Sbjct: 61  MAFEAVRRGKADGGLDLNELLPVSEHAQSYGGSSMFLRSGETVSVEDLLRGIIVVSGNDA 120

Query: 144 STAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
                E +S  G+E  FA +M+ +A+++GM N+ + NASG      + + RD AIL   L
Sbjct: 121 CVVIAEALSPDGTEYGFARMMTQRAQQLGMNNSTFINASGWPQTGHVMSMRDLAILADRL 180

Query: 202 RKNFPQYYKYFSIRKFRYRNRII---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             +FP++Y  F+  +F + NR+     N N +L      DG+KTG+T+ +G+ +V S + 
Sbjct: 181 ITDFPEFYPMFAETEFPFDNRVPSNSRNRNPVLTMGIGADGLKTGHTQEAGYGLVGSAKQ 240

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
            D  ++ V+ G+ T+  R Q++  ++     +  ++
Sbjct: 241 GDRRVIFVITGLETTAARAQESQAIVNWAFRQFAMR 276


>gi|262376081|ref|ZP_06069312.1| penicillin-binding protein 6 [Acinetobacter lwoffii SH145]
 gi|262309175|gb|EEY90307.1| penicillin-binding protein 6 [Acinetobacter lwoffii SH145]
          Length = 382

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 85/273 (31%), Positives = 145/273 (53%), Gaps = 7/273 (2%)

Query: 35  LFLSIIMISMASELHAKPK---YSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIF 90
           L L       A+ L A P+    S +++D    Q+   K  +E   PAS+TKMMT YII 
Sbjct: 10  LLLVPSFSFAATVLSAPPELNNKSYVLMDYETGQLLASKNENEKLAPASMTKMMTSYIIE 69

Query: 91  EYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + L S +L  + Q+ ++++A    +   S +Y+      T  + +  +I +S ND S A 
Sbjct: 70  QKLLSGELTEDEQVRMNESAWCRGSSAESCMYVPLNGTATALEMLRGIIIQSGNDASKAM 129

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E I+G+E  FA +M+ +AK+IGM NT + N++G+  +   +TA+D A L   + K+  +
Sbjct: 130 AEHIAGNEGTFAHMMNQEAKRIGMTNTSFVNSTGMPAEGHYSTAKDMATLAQHIIKDSSK 189

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           YY  ++ ++F +      N N LL    ++DG+KTG+T  +G+ + TS +     +++V+
Sbjct: 190 YYPIYAEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPTRLISVI 249

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
            G PT QER  +  EL+         K+ Q  +
Sbjct: 250 FGAPTMQERATQTRELLAWGYANFETKNVQPAK 282


>gi|153814787|ref|ZP_01967455.1| hypothetical protein RUMTOR_01002 [Ruminococcus torques ATCC 27756]
 gi|317500310|ref|ZP_07958535.1| serine-type D-Ala-D-Ala carboxypeptidase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|145847818|gb|EDK24736.1| hypothetical protein RUMTOR_01002 [Ruminococcus torques ATCC 27756]
 gi|316898251|gb|EFV20297.1| serine-type D-Ala-D-Ala carboxypeptidase [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 415

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/279 (28%), Positives = 149/279 (53%), Gaps = 11/279 (3%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+++++ +   +   +  D  R PAS+TK+MT+ +IF+ ++SKK+ L  ++PVS+ AA
Sbjct: 58  APSALLMEASTGTVLFEQDADTKRPPASVTKIMTMLLIFDAVESKKISLEDKVPVSEFAA 117

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S+++L+     T +  +  +   SAND   A  E+ISGSE+ F   M+ +AK +GM
Sbjct: 118 SMGGSQVFLETGETQTVDTMLKCISIASANDACVAMAEYISGSEEAFVQEMNKRAKALGM 177

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-------- 223
            NT + N +GL  +  +TTARD A++   L   +PQ ++Y         +          
Sbjct: 178 HNTNFVNCNGLDAQGHVTTARDIALMSRELITKYPQIHEYAMTWMENITHETKKGTSEFG 237

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           +TN NKL+ +     G+KTG T  + F +  + +  D  ++AVVM   TS+ER   A+++
Sbjct: 238 LTNTNKLVRQYEYATGLKTGSTGEAKFCVSATGKKDDVELIAVVMAADTSKERFADAVKM 297

Query: 284 ITSFLEKKTLKHQQTHRKDNLSSTS--LKKSLMIKKLKR 320
           +     K  +   +   K   +     +++++ +++ ++
Sbjct: 298 MNYGFGKCQVYSDEKPMKTKYAVVKNGVEENIEVERGEK 336


>gi|49474795|ref|YP_032837.1| penicillin-binding protein [Bartonella quintana str. Toulouse]
 gi|49240299|emb|CAF26780.1| Penicillin-binding protein [Bartonella quintana str. Toulouse]
          Length = 365

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 96/298 (32%), Positives = 159/298 (53%), Gaps = 11/298 (3%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL 93
           LFLS I+   ++ + A+P  S   +DV   ++    Q  E  YPASLTK+MT Y+IF  +
Sbjct: 8   LFLSFILNLTSTIVLAQPFIS---VDVTTGRILEHNQAFERWYPASLTKLMTAYVIFRAM 64

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
              K+  N  I +S+ AA         K  +  T +  +   + +S ND++ A  E ++G
Sbjct: 65  SIGKISSNKHITISEYAAKAPTYHSGYKAGSVLTLDTALSITMVKSTNDLAIAMSEAVAG 124

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+K F   M+ +A+++GM  T + NASGL D +  +TARD A+L + +R+ FPQY  YFS
Sbjct: 125 SQKAFVQQMNAEAQRLGMFGTHFTNASGLPDPHNYSTARDIALLAVQIRREFPQYAHYFS 184

Query: 214 IRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           I    + N  +I  N N L+ +   IDG+KTG+   SGFN+V S       I+AV++G  
Sbjct: 185 IPAIDFGNKRKIQPNSNNLIGRFDGIDGMKTGFICASGFNLVASATRNKRTIIAVILGSN 244

Query: 272 TSQERDQKALELITSFL-----EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
           T  ER++KA +L+          + TL   + +    + ++ +++     +  + ++ 
Sbjct: 245 TISEREEKAAQLLERGFLHQGSLQSTLATLEPYGTKMIQASDMRQQTCTPEAMKMHAN 302


>gi|90418359|ref|ZP_01226271.1| putative penicillin-binding protein, D-Ala-D-Ala carboxypeptidase
           family [Aurantimonas manganoxydans SI85-9A1]
 gi|90338031|gb|EAS51682.1| putative penicillin-binding protein, D-Ala-D-Ala carboxypeptidase
           family [Aurantimonas manganoxydans SI85-9A1]
          Length = 393

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 122/243 (50%), Gaps = 8/243 (3%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++I++D    ++   K  D    PASL K+MT+ ++F+ L+  ++  + +  VS+ A 
Sbjct: 38  APTAILVDYGTGRVLYEKDADTEIPPASLAKLMTIAVLFDDLKQGRVQRDDRFVVSEHAW 97

Query: 112 -----TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
                +   S ++L   +    E  I  +I +S ND +    E +SGS + FA  M+ +A
Sbjct: 98  RTGGASSGGSTMFLPLNSEVAVEDLIRGIIVQSGNDATIVVAEGLSGSVEAFAGRMNAEA 157

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
           +KIG+ ++ + N  GL D  Q  + RD A L   L + FP+ Y  F+   F Y      N
Sbjct: 158 EKIGLTHSHFTNPHGLPDPEQHVSVRDLARLATYLIREFPEDYPIFAEESFTYNGIKQQN 217

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            N LL+     DG+KTG+T  +G+ +V S       IV  + GM ++ ER  +A  L+  
Sbjct: 218 RNPLLDL--GADGLKTGHTSAAGYGLVASAERDGRRIVLAMSGMGSTAERASEARRLMNF 275

Query: 287 FLE 289
            L+
Sbjct: 276 GLQ 278


>gi|114770997|ref|ZP_01448437.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium
           HTCC2255]
 gi|114548279|gb|EAU51165.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium
           HTCC2255]
          Length = 382

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 80/283 (28%), Positives = 137/283 (48%), Gaps = 13/283 (4%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++VID     +   K  + R  PAS++K+MTL+++FE L+ +++ ++T+  VS+ A 
Sbjct: 27  ARSAMVIDQTTGTILMAKDADRRVPPASMSKLMTLFMLFEALRDERIAMDTEFLVSERAT 86

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S ++L+E    +    I  +I +S ND      E I+G+E  FA  M+ +A ++GM
Sbjct: 87  KIGGSTMFLREGERVSVRDLIQGIIVQSGNDACITVAENIAGTETAFADQMTKRAIELGM 146

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
            N+ + N++G  D  Q  +ARD   +  ++   FP YY +F+   F +      N N LL
Sbjct: 147 NNSSFGNSTGWPDPLQRMSARDLVTIANIIITEFPNYYPFFAQTSFTWDGVKQNNRNPLL 206

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
                 DG+KTG+T  +G+ +V S R     I+ ++ G+ +   R  +A +L      + 
Sbjct: 207 PLGIGADGLKTGHTNEAGYGLVGSARQGQRRIIFMITGLESKAARANEAEKLTNWAFRQF 266

Query: 292 TLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
            +K               KK  +I K      + K ID  A  
Sbjct: 267 VIKDL------------FKKDEVISKADVWLGENKTIDLIAED 297


>gi|157803860|ref|YP_001492409.1| penicillin-binding protein DacF precursor [Rickettsia canadensis
           str. McKiel]
 gi|157785123|gb|ABV73624.1| Penicillin-binding protein DacF precursor [Rickettsia canadensis
           str. McKiel]
          Length = 306

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 99/251 (39%), Positives = 151/251 (60%), Gaps = 1/251 (0%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
            P  +S+VID    ++      + P YPASLTK+MTLY++FE +++ KL L+ ++ VS  
Sbjct: 33  PPVQTSLVIDAKSGKVLQSHNSQIPIYPASLTKLMTLYLMFESIEAGKLSLDKKLFVSAK 92

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A+   P KL LK     T  + I  LI +SAND +    E + GSEK FA LM+ KAK++
Sbjct: 93  ASQMPPCKLGLKAGETITVREAINGLIIKSANDAAVTVAENMKGSEKAFAHLMNVKAKQL 152

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM+NT +KNASG HD  Q TTARD A L + L++++P+YY  FS   F +R  II  HN+
Sbjct: 153 GMKNTYFKNASGWHDPLQQTTARDIAKLAMALKRDYPKYYPLFSKTSFVFRGNIINGHNR 212

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           +       +G+KTG+   +G+N+VT+       ++AVV G  ++  RDQK + L+  +  
Sbjct: 213 VTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAVVTGSRSAVSRDQKMIGLLDHYFN 272

Query: 290 KKTLKHQQTHR 300
            K +  +++ +
Sbjct: 273 IKPIAAKRSIK 283


>gi|311068945|ref|YP_003973868.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942]
 gi|310869462|gb|ADP32937.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942]
          Length = 389

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 134/248 (54%), Gaps = 7/248 (2%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A    S+++I+ +  ++   K    R  PAS+TK+MT+ +I E L   K+ ++ ++  S+
Sbjct: 34  AHEAKSAVLIERDTGKVLYNKNSHERLAPASMTKIMTMLLIMEALDKGKIKMSDKVRTSE 93

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+     T ++ +  +   S ND S A  E+ISGSE++F   M+ KAK+
Sbjct: 94  YAASMGGSQIFLEPGEEMTVKEMLKGIAIASGNDSSVAMAEYISGSEEEFVQKMNKKAKE 153

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI-----RKFRYRNRI 223
           +G+++T +KN +GL +K   ++A D A++   L K + +   +        R+   +   
Sbjct: 154 LGLKDTTFKNPTGLPEKGHYSSAYDMAMMSKELLK-YDKITAFTGTYEDYLREDTDKKFW 212

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           + N N+L+     +DG+KTGYT  + + +  S +  +   +AVV G  T ++R+ +  ++
Sbjct: 213 LVNTNRLIKFYPGVDGVKTGYTGEAKYCLTASAKKGNMRAIAVVFGASTPKDRNAQVTKM 272

Query: 284 ITSFLEKK 291
           +     + 
Sbjct: 273 LDYAFSQY 280


>gi|296445856|ref|ZP_06887808.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus
           trichosporium OB3b]
 gi|296256684|gb|EFH03759.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus
           trichosporium OB3b]
          Length = 400

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 70/255 (27%), Positives = 121/255 (47%), Gaps = 10/255 (3%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +I++D   + +   K  D+   PAS  K+MT  I+F  +   +L L+ +  VS+ A    
Sbjct: 42  AILVDAGTHTVLLEKAADDFVTPASTVKVMTAEIVFHEIAEGRLKLDDEFTVSEHAWRSG 101

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S ++L   +    E  I  L+  S ND +    E ++GSE+ F   M+ +A ++
Sbjct: 102 GAPAGGSAMFLPVNSRAKVEDLIRGLVIVSGNDAAITLAEGVAGSEEAFVGRMNKRASEL 161

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+  +I+ N  G    +Q  T R+   L   + + +P +Y+YF  ++F +      N N 
Sbjct: 162 GLAKSIFGNPWGQAGPDQKVTPREMVQLAAHVIETYPDFYRYFGEKEFTWNKIRQQNRNP 221

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL- 288
           LL      DG+KTG   +SGF +V S    D  ++  V G  T++ER ++A +L+     
Sbjct: 222 LLTMSLGADGLKTGNIDSSGFGLVGSAVQDDRRLIVAVYGAKTAKERAEEARKLLQWGFR 281

Query: 289 ---EKKTLKHQQTHR 300
              EK+  K  +   
Sbjct: 282 NFEEKQLFKAGEPVG 296


>gi|126444942|ref|YP_001062743.1| peptidase [Burkholderia pseudomallei 668]
 gi|134283712|ref|ZP_01770410.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 305]
 gi|167906685|ref|ZP_02493890.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|237510538|ref|ZP_04523253.1| family S11 unassigned peptidase [Burkholderia pseudomallei MSHR346]
 gi|126224433|gb|ABN87938.1| family S11 unassigned peptidase [Burkholderia pseudomallei 668]
 gi|134244894|gb|EBA44990.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 305]
 gi|235002743|gb|EEP52167.1| family S11 unassigned peptidase [Burkholderia pseudomallei MSHR346]
          Length = 333

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 72/244 (29%), Positives = 127/244 (52%), Gaps = 10/244 (4%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S +V+D +  +  G    D  R PASLTK+MT Y+ F+ L+   L  +  + V+      
Sbjct: 58  SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERAALRWDDTVTVAADDIAS 117

Query: 113 --QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             ++ +++YL           +  LI  SAND +    + I GS   FA +M++ A+++G
Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ + + SG+   +  +TA D +IL   L ++FP +Y + S R F Y     TN N+L
Sbjct: 178 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRY--KD----DPIVAVVMGMPTSQERDQKALELI 284
           L    ++DG+KTG+T  +G+ +V + +           ++AV++G PT ++R   A  L+
Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALL 297

Query: 285 TSFL 288
               
Sbjct: 298 DQGF 301


>gi|167819885|ref|ZP_02451565.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 91]
          Length = 309

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 72/244 (29%), Positives = 127/244 (52%), Gaps = 10/244 (4%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S +V+D +  +  G    D  R PASLTK+MT Y+ F+ L+   L  +  + V+      
Sbjct: 58  SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERDALRWDDTVTVAADDIAS 117

Query: 113 --QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             ++ +++YL           +  LI  SAND +    + I GS   FA +M++ A+++G
Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ + + SG+   +  +TA D +IL   L ++FP +Y + S R F Y     TN N+L
Sbjct: 178 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRY--KD----DPIVAVVMGMPTSQERDQKALELI 284
           L    ++DG+KTG+T  +G+ +V + +           ++AV++G PT ++R   A  L+
Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALL 297

Query: 285 TSFL 288
               
Sbjct: 298 DQGF 301


>gi|170757721|ref|YP_001781407.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum B1 str.
           Okra]
 gi|169122933|gb|ACA46769.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum B1
           str. Okra]
          Length = 407

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 19/285 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+++I+    ++   K   E   PAS+TK+MT+ +  E + S K+ L  ++ +S+ A 
Sbjct: 56  AKSALLIEPTTGKVIYEKNPHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAK 115

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S + L      T E  +  +   S ND + A GE+++GSE+ F  +M+++A+K+ M
Sbjct: 116 KMGGSTMLLDVGEERTVEDLLKGIAIASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNM 175

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITN 226
           ++T +KN +GL  +   T+A D +I+   L K   Q  KY      +I + R     + N
Sbjct: 176 KDTSFKNCTGLSAEGHKTSAYDISIMSRELLK-HKQILKYTGTYMETISEGRKSPIGLVN 234

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           HNKL+      DG+KTG+T  + + I  + +     ++AV+MG PT + R++ A +L+  
Sbjct: 235 HNKLVRFFKGCDGLKTGFTDEAKYCISATAKKDGVRMLAVIMGAPTYKIRNKDASKLMNY 294

Query: 287 FLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
              K   K            T +KK  +I K+       K   AK
Sbjct: 295 GFSKFECK------------TLVKKGDVISKVPLNSKGDKYFMAK 327


>gi|302874917|ref|YP_003843550.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium cellulovorans
           743B]
 gi|307690464|ref|ZP_07632910.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cellulovorans
           743B]
 gi|302577774|gb|ADL51786.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium cellulovorans
           743B]
          Length = 403

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 79/274 (28%), Positives = 139/274 (50%), Gaps = 11/274 (4%)

Query: 38  SIIMISMASELHA--KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           + +  S A +  A      S+++++ N  ++   K   +   PAS+TK+MT+ +  E + 
Sbjct: 35  AAVETSAAKDTTAINVEANSALLMEPNTGKVLYEKNIHDKYAPASVTKIMTMLLAMEAID 94

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
           S ++ L   I VS+ A     S + L+     T E+ I  +   S ND + A  E+I GS
Sbjct: 95  SGRIKLTDTITVSENAKKMGGSSMILETGEVRTVEEIIKGIAIASGNDAAVAMAEYIGGS 154

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS- 213
           E+ F ++M+ K +++GM+NT +KN +GL     ++TA D +++   L K  P   KY S 
Sbjct: 155 EENFVVMMNKKCEELGMKNTTFKNCTGLSADGHLSTAYDISLMSRELLK-HPTILKYSSI 213

Query: 214 ----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
               I + R     + NHNKL+      DG+KTG+T  + + I  +       +++V+MG
Sbjct: 214 YMETISEGRKTPIELVNHNKLVRFFKGCDGLKTGFTSEAKYCISATATRDGVRMLSVIMG 273

Query: 270 MPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
            PT + R++ A  L+     K   + +   +KD+
Sbjct: 274 APTFKVRNRDASMLMNYGFSK--FESKVIVKKDD 305


>gi|167742710|ref|ZP_02415484.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 14]
 gi|167849724|ref|ZP_02475232.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei B7210]
          Length = 310

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 72/244 (29%), Positives = 127/244 (52%), Gaps = 10/244 (4%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S +V+D +  +  G    D  R PASLTK+MT Y+ F+ L+   L  +  + V+      
Sbjct: 58  SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERDALRWDDTVTVAADDIAS 117

Query: 113 --QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             ++ +++YL           +  LI  SAND +    + I GS   FA +M++ A+++G
Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ + + SG+   +  +TA D +IL   L ++FP +Y + S R F Y     TN N+L
Sbjct: 178 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRY--KD----DPIVAVVMGMPTSQERDQKALELI 284
           L    ++DG+KTG+T  +G+ +V + +           ++AV++G PT ++R   A  L+
Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALL 297

Query: 285 TSFL 288
               
Sbjct: 298 DQGF 301


>gi|258515293|ref|YP_003191515.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778998|gb|ACV62892.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 392

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 70/276 (25%), Positives = 141/276 (51%), Gaps = 16/276 (5%)

Query: 31  MGKILFLSIIMISMASELHAKPKY------------SSIVIDVNKNQMTGFKQ-DEPRYP 77
           +  ++  +I ++S    + AKP              ++I+++ N  ++   KQ D+    
Sbjct: 10  LLFVIISAICIVSKPGTIQAKPAVQNNEAGLETTAEAAILMEANTGKILWSKQPDKELPM 69

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MT+ +  E + + K+ L  +I  S+ A     S++YL+     + E+ ++++  
Sbjct: 70  ASVTKIMTMLLAVEAVDAGKVKLTDKITTSENAWNMGGSQIYLEPGEELSMEEMLISIAV 129

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            SAND   A  E + GSE+ F  +M+ KAK++G+ +T + N +GL  +N  T+A D A++
Sbjct: 130 GSANDACVAVAEHLGGSEEAFVGMMNKKAKELGLAHTNFANTNGLPVENHYTSAHDMAMI 189

Query: 198 GILLRKNFPQYYKYFSIRKF--RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
                +  P + K  SI ++  R  + ++ N NKLL         KTG+T  + + + ++
Sbjct: 190 IKEALR-HPLFVKVSSIYRYDLRGGDFVLWNTNKLLKWYEGTVAGKTGWTNEAKYCLASA 248

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
           +  K   ++AVV+G    +   +++++L      + 
Sbjct: 249 VERKGLRLIAVVLGTAEPKSHFRESMKLYNYGFARY 284


>gi|83308700|emb|CAJ01610.1| conserved hypothetical protein [Methylocapsa acidiphila]
          Length = 540

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 88/287 (30%), Positives = 144/287 (50%), Gaps = 4/287 (1%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQS 95
           +   + +  +         +IV++     +       +P YPASLTK+MT+Y+  + ++ 
Sbjct: 1   MVAALCAGTTASAPAQAAPAIVVEYPSGAVLYEDHATQPWYPASLTKLMTVYVALKAVRE 60

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
            +L L+T + VS  AA+  PSK+  +  T  T    +  L+ +SAND++    E ISGS 
Sbjct: 61  HRLTLDTPLAVSARAASMPPSKMGFRPGTLVTLGNAMKMLMVKSANDLAVTIAEGISGSV 120

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           + FA  M+  A  +G++ + + N +GL +   I++ARD A+L I L   FP+    FSI 
Sbjct: 121 EAFADEMNEAAASLGLRQSHFVNPNGLPNPQHISSARDFAVLAIALYSTFPEQADLFSIG 180

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
             R    IITNHN LL +   +DG+KTG+T  +GFN+V S       ++AV++G P   +
Sbjct: 181 ALRLGGDIITNHNNLLGRYPGVDGMKTGFTCAAGFNVVASATQGGRKLIAVILGAPNVAQ 240

Query: 276 RDQKALELITSFL---EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
           R  KA  L        ++ T          N       +++  K+ K
Sbjct: 241 RTIKAAALFDRGFSGVDRPTGSVTALAGPTNAPPPDPNQNVCRKRGK 287


>gi|306841800|ref|ZP_07474484.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO2]
 gi|306288114|gb|EFM59506.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO2]
          Length = 370

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 100/238 (42%), Positives = 151/238 (63%), Gaps = 2/238 (0%)

Query: 52  PKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
              S +V D +  +M G         PASL KMMTLY+ FE L++ +LH +  +P+SK A
Sbjct: 2   ASTSWVVFDADSGRMLGQDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNA 61

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A++   KL+LK     +T   +  +I  SAND +T  GE+++GSE  FA LM+ +A++IG
Sbjct: 62  ASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIG 121

Query: 171 MQNTIYKNASGLHDK-NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           M++TI+ N SGL    +Q+TTARD A+LG+ LR++FP+ Y  FS R F +R R+   HN 
Sbjct: 122 MKSTIFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNN 181

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           L+ +   +DGIKTGYT  SG+N+V+S    +  +V VV+G  ++ +RD +  +L+T F
Sbjct: 182 LMYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQMAKLLTRF 239


>gi|294635241|ref|ZP_06713743.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC
           23685]
 gi|291091358|gb|EFE23919.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC
           23685]
          Length = 387

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 123/244 (50%), Gaps = 9/244 (3%)

Query: 53  KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S +++D    Q+      D  R PASLTK+MT Y++   L   ++ LN  +P+   A 
Sbjct: 33  AASWVLMDAQTGQILAQGNPDARRNPASLTKLMTNYVVERALDQGRIGLNDPVPIGNDAW 92

Query: 112 T------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
                  +  S ++LK     T    I  +I  S ND   A  +++SG +  F  LM+  
Sbjct: 93  ATRNPSFKGSSLMFLKPGDKATVSDLIRGIIIDSGNDACVALADYVSGDQAGFVRLMNGY 152

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
            +++ +QNT ++   GL    Q ++ARD A L   +  +   YY +++ +   +      
Sbjct: 153 VQQLHLQNTHFETVHGLDAPGQYSSARDLAQLARAIILHEQPYYHFYAQKSLSWNGVTQN 212

Query: 226 NHNKLLN-KMHNIDGIKTGYTRNSGFNIVT-SLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           N N LL  +  ++DG+KTG+T ++GFN+V  S+      ++AVVMG  +S+ R+ +A +L
Sbjct: 213 NRNGLLWDQDLHVDGMKTGHTASAGFNLVASSIDPHGQRLIAVVMGADSSRGREVQAKKL 272

Query: 284 ITSF 287
           +   
Sbjct: 273 LQWG 276


>gi|262372977|ref|ZP_06066256.1| penicillin-binding protein 6 [Acinetobacter junii SH205]
 gi|262313002|gb|EEY94087.1| penicillin-binding protein 6 [Acinetobacter junii SH205]
          Length = 382

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 83/301 (27%), Positives = 149/301 (49%), Gaps = 18/301 (5%)

Query: 44  MASELHAKPK---YSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
            A+ L A P+    S +++D    Q+   K  +E   PAS+TKMMT YII + L   +L 
Sbjct: 19  AATVLSAPPELNNKSYVLMDYETGQILAAKNENEKLAPASMTKMMTSYIIEQKLLKGELT 78

Query: 100 LNTQIPVSKTAATQNPSK---LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
            N Q+ ++++A  +  S    +Y+      T  + +  +I +S ND S A  E I+G+E 
Sbjct: 79  ENEQVRMNESAWCRGSSTESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAGNEG 138

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            FA +M+ +AK++GM NT + N++G+      +TA+D A+L   + K+  +YY  +S ++
Sbjct: 139 TFAHMMNQEAKRVGMVNTHFINSTGMPADGHYSTAKDMAVLAQHIIKDSSKYYPIYSEKE 198

Query: 217 FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           F +      N N LL    ++DG+KTG+T  +G+ + TS +     +++V+ G P+  ER
Sbjct: 199 FTFNGIKQGNRNALLYTDPSVDGLKTGHTEEAGYCLTTSSKRGPMRLISVIFGTPSMNER 258

Query: 277 DQKALELITSFL-----------EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQF 325
             +   L+                +   K +    K++     L ++  +   K    + 
Sbjct: 259 ASQTRTLLAWGFANFETANVQPANQVLAKAKVWFGKEDEVQIGLAENFNVTMPKGQADKI 318

Query: 326 K 326
           K
Sbjct: 319 K 319


>gi|298291753|ref|YP_003693692.1| serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506]
 gi|296928264|gb|ADH89073.1| Serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506]
          Length = 414

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 73/277 (26%), Positives = 132/277 (47%), Gaps = 8/277 (2%)

Query: 20  GSIYIQRNIQLMGKILFL--SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRY 76
           G     R + L   +LF   + ++ ++A          +I++D     +   K  D    
Sbjct: 13  GGTAALRTVLLASFVLFCLAAFVLPALAQTQPEIAAPQAILMDFESGTVLFEKAADTQSA 72

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS-----KLYLKEKTYFTTEQG 131
           P S+ K+M+L +IF  +   +L  +T+  VS+ A  +  +      ++    +       
Sbjct: 73  PGSIAKLMSLAVIFREITEGRLSPDTEFKVSEYAWRRGGAPSGGATMFAALNSSIKVSDL 132

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +   I  S ND +    E ISG+E  F++ M+ +AK++G+  + + N++GL D +Q TTA
Sbjct: 133 LRGAIIPSGNDATIILAEGISGNELGFSVKMNEEAKRLGLTGSSFHNSNGLSDPDQKTTA 192

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           RD A +   + +++P  YK FS   F +     +N N LL      DG  TGY +  GFN
Sbjct: 193 RDMAKIATHIIRDYPDLYKIFSEPDFLWSKIRQSNRNPLLGMSLGADGFMTGYLKEGGFN 252

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +V S    +  ++ V++G  + +ER + A +L+    
Sbjct: 253 LVGSAVQNNQRLIVVILGGKSEKERAEDARKLLEWGF 289


>gi|148379819|ref|YP_001254360.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str.
           ATCC 3502]
 gi|153934177|ref|YP_001384117.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str.
           ATCC 19397]
 gi|153937458|ref|YP_001387657.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str.
           Hall]
 gi|148289303|emb|CAL83399.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str.
           ATCC 3502]
 gi|152930221|gb|ABS35721.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A
           str. ATCC 19397]
 gi|152933372|gb|ABS38871.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A
           str. Hall]
          Length = 407

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 19/285 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+++I+    ++   K   E   PAS+TK+MT+ +  E + S K+ L  ++ +S+ A 
Sbjct: 56  AKSALLIEPTTGKVIYEKNPHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAK 115

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S + L      T E  +  +   S ND + A GE+++GSE+ F  +M+++A+K+ M
Sbjct: 116 KMGGSTMLLDVGEERTVEDLLKGIAIASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNM 175

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITN 226
           ++T +KN +GL  +   T+A D +I+   L K   Q  KY      +I + R     + N
Sbjct: 176 KDTSFKNCTGLSAEGHKTSAYDISIMSRELLK-HKQILKYTGTYMETISEGRKSPIGLVN 234

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           HNKL+      DG+KTG+T  + + I  + +     ++AV+MG PT + R++ A +L+  
Sbjct: 235 HNKLVRFFKGCDGLKTGFTDEAKYCISATAKKDGVRMLAVIMGAPTYKIRNKDASKLMNY 294

Query: 287 FLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
              K   K            T +KK  +I K+       K   AK
Sbjct: 295 GFSKFECK------------TLVKKGDVISKVPLNSKGDKYFMAK 327


>gi|15892459|ref|NP_360173.1| penicillin-binding protein dacF precursor [Rickettsia conorii str.
           Malish 7]
 gi|15619614|gb|AAL03074.1| penicillin-binding protein dacF precursor [Rickettsia conorii str.
           Malish 7]
          Length = 306

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 98/278 (35%), Positives = 158/278 (56%), Gaps = 7/278 (2%)

Query: 30  LMGKILFLSIIMISMASELHA------KPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTK 82
           L+  I  ++     ++    A       P  +S+VID    ++      + R YPASLTK
Sbjct: 6   LLPYIFVVTFFFAPISEAKKAVKNTPKPPVQTSLVIDAKSGKVLQAHNSQIRIYPASLTK 65

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MTLY++FE +++ KL L+ ++ VS  A+   P KL LK     T  + I  LI +SAND
Sbjct: 66  LMTLYLMFEAIEAGKLPLDKKLLVSAKASKMPPCKLGLKAGETITVREAINGLIIKSAND 125

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
           V+    E + GSEK FA LM+ KAK++GM+NT +KNASG H+  Q TTARD A L + L+
Sbjct: 126 VAVTVAEGMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHNPLQQTTARDMAKLAMALK 185

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           +++P++Y  F+   F +R  ++  HN++       +G+KTG+   +G+N+VT+       
Sbjct: 186 RDYPKFYPLFAKTSFVFRGNVVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKS 245

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           ++AVV G  ++  RDQK + L+      K +  + + +
Sbjct: 246 LIAVVTGGKSAASRDQKMMGLLDQHFNIKPIVPKPSIK 283


>gi|300021591|ref|YP_003754202.1| serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299523412|gb|ADJ21881.1| Serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 360

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 85/254 (33%), Positives = 135/254 (53%), Gaps = 4/254 (1%)

Query: 39  IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKK 97
           +  I       A P   +++ +++  ++   +  D+  YPASLTK+ T Y+ F+ ++  K
Sbjct: 13  LFCIGGPITASAGP---ALLFELSTGKVLYSEDIDDVWYPASLTKLTTAYLAFQAIKDGK 69

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           L L  +IP S  A  Q PSK  L      T EQ + A+I +SANDV+    E ISGSE  
Sbjct: 70  LRLTDKIPCSLVATLQPPSKAGLNVGDTLTVEQALQAVIVKSANDVTVMLAEAISGSETN 129

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   M+  A+++GM  T + N +GL    Q+T+ARD A +   +  +FP+Y  Y+S+   
Sbjct: 130 FIEQMNATAQRLGMTRTHFDNTNGLPSPGQLTSARDLARIARAIVTDFPEYASYWSMPAM 189

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           R   R + +HN LL      DG+KTG+T +SG+N+  S       +VA+V+G  +  ER 
Sbjct: 190 RIGKRRLGSHNALLKTFPGADGMKTGFTCDSGYNVAASATRDGRRLVAIVLGESSGNERA 249

Query: 278 QKALELITSFLEKK 291
            ++  L+    +  
Sbjct: 250 VRSAALLEYGFQYY 263


>gi|239947237|ref|ZP_04698990.1| penicillin-binding protein DacF [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921513|gb|EER21537.1| penicillin-binding protein DacF [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 306

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 101/274 (36%), Positives = 156/274 (56%), Gaps = 8/274 (2%)

Query: 35  LFLSIIMISMASEL-------HAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTL 86
           +F+S    +  SE           P  +S+VID    ++      + R YPASLTK+MTL
Sbjct: 10  IFISTFFFAPISEAKKAVKNTPKPPVQTSLVIDAKSGKVLQAHNSQIRIYPASLTKLMTL 69

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y++FE +++ KL L+ ++ VS  A+   P KL LK     T  + I  LI +SAND +  
Sbjct: 70  YLMFESIEAGKLPLDKKLLVSAKASKMPPCKLGLKAGETITVREAINGLIIKSANDAAVT 129

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E + GSEK FA LM+ KAK++GM+NT +KNASG HD  Q TTARD A L + L++++P
Sbjct: 130 VAENMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHDPLQQTTARDMAKLAMALKRDYP 189

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           +YY  F+   F +R  I+  HN++       +G+KTG+   +G+N+VT+       ++AV
Sbjct: 190 KYYPLFAKTSFVFRGNIVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAV 249

Query: 267 VMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           V G  ++  RDQK + L+      K +  + + +
Sbjct: 250 VTGGKSAASRDQKMMGLLDQHFNIKPIVPKPSIK 283


>gi|187779539|ref|ZP_02996012.1| hypothetical protein CLOSPO_03135 [Clostridium sporogenes ATCC
           15579]
 gi|187773164|gb|EDU36966.1| hypothetical protein CLOSPO_03135 [Clostridium sporogenes ATCC
           15579]
          Length = 407

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 82/285 (28%), Positives = 142/285 (49%), Gaps = 19/285 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+++I+    ++   K   E   PAS+TK+MT+ +  E + S K+ L  ++ +S+ A 
Sbjct: 56  AKSALLIEPTTGKVIYEKNSHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAK 115

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S + L      T E+ +  +   S ND + A GE+++GSE+ F  +M+++A+K+ M
Sbjct: 116 KMGGSTMLLDVGEERTVEELLKGIAIASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNM 175

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITN 226
           ++T +KN +GL ++   T+A D +I+   L K   Q  KY      +I + R     + N
Sbjct: 176 KDTSFKNCTGLSEEGHKTSAYDISIMSRELLK-HKQILKYTGTYMETISEGRKSPIGLVN 234

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           HNKL+      DG+KTG+T  + + I  +       ++AV+MG PT + R++ A +L+  
Sbjct: 235 HNKLVRFFKGCDGLKTGFTDEAKYCISATATRDGVRMLAVIMGAPTYKIRNKDASKLMNY 294

Query: 287 FLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
              K   K            T +KK  +I K+       K   AK
Sbjct: 295 GFSKFQCK------------TIVKKGDVISKIPLNSKGDKYFMAK 327


>gi|67459001|ref|YP_246625.1| penicillin-binding protein DacF precursor [Rickettsia felis
           URRWXCal2]
 gi|67004534|gb|AAY61460.1| Penicillin-binding protein DacF precursor [Rickettsia felis
           URRWXCal2]
          Length = 306

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 99/278 (35%), Positives = 156/278 (56%), Gaps = 7/278 (2%)

Query: 30  LMGKILFLSIIMISMASELHA------KPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTK 82
           L+  I   +     ++    A       P  +S+VID    ++      + R YPASLTK
Sbjct: 6   LLPYIFIATFFFAPISEAKKAVKNTSKPPVQTSLVIDAKSGKVLQAHNSQIRIYPASLTK 65

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MTLY++FE +++ KL L+ ++ VS  A+   P KL LK     T  + I  LI +SAND
Sbjct: 66  LMTLYLMFEAIEAGKLPLDKKLLVSAKASKMPPCKLGLKAGETITVREAINGLIIKSAND 125

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            +    E + GSEK FA LM+ KAK++GM+NT +KNASG HD  Q TTARD A L + L+
Sbjct: 126 AAVTVAEGMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHDPLQQTTARDMAKLAMALK 185

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           +++P+YY  F+   F +R  I+  HN++       +G+KTG+   +G+N++T+       
Sbjct: 186 RDYPKYYPLFAKTSFVFRGNIVNGHNRVTKNYQGAEGMKTGFHTPAGYNLITTASRNGKS 245

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           ++AVV G  ++  RDQK + L+      K +  + + +
Sbjct: 246 LIAVVTGGKSAASRDQKMMGLLDQHFNIKPIVPKSSIK 283


>gi|53722262|ref|YP_111247.1| peptidase [Burkholderia pseudomallei K96243]
 gi|52212676|emb|CAH38706.1| family S11 unassigned peptidase [Burkholderia pseudomallei K96243]
          Length = 333

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 72/244 (29%), Positives = 127/244 (52%), Gaps = 10/244 (4%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S +V+D +  +  G    D  R PASLTK+MT Y+ F+ L+   L  +  + V+      
Sbjct: 58  SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERDALRWDDTVTVAADDIAS 117

Query: 113 --QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             ++ +++YL           +  LI  SAND +    + I GS   FA +M++ A+++G
Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ + + SG+   +  +TA D +IL   L ++FP +Y + S R F Y     TN N+L
Sbjct: 178 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRY--KD----DPIVAVVMGMPTSQERDQKALELI 284
           L    ++DG+KTG+T  +G+ +V + +           ++AV++G PT ++R   A  L+
Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALL 297

Query: 285 TSFL 288
               
Sbjct: 298 DQGF 301


>gi|83311550|ref|YP_421814.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum
           AMB-1]
 gi|82946391|dbj|BAE51255.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum
           AMB-1]
          Length = 388

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 146/271 (53%), Gaps = 6/271 (2%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           +R++     +  +++   + A  +    K  +I+ID    Q+   K  DE   P+S++K+
Sbjct: 7   RRSLAAALAVPLMALSATAGAQSIETAAKQ-AIIIDYASGQVLMEKNADELMVPSSMSKL 65

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTEQGILALITRS 139
           MT++++F+ L++     + ++PVS+TA  +      S ++L   +  T E+ +  ++ +S
Sbjct: 66  MTVFMVFDKLKTGAWKPSDRLPVSETAWKRHYKSEGSLMFLPVNSTATVEELLKGVVIQS 125

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND  +   E  SGSE+ FA   + +A++IG+  +++KNASG  +   + TARD ++L  
Sbjct: 126 GNDACSVLAEAHSGSEEAFAEEETRRARQIGLTRSVFKNASGWPEPGHLMTARDLSVLAR 185

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            L  +FP+YY  FS  +F +      N N LL      DG+KTG+T  +G+ +  S++  
Sbjct: 186 HLIADFPEYYPLFSQMEFVFNGIKQGNRNPLLYNTPGADGLKTGHTEAAGYGLTASIKRG 245

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +  I+ ++ GM + +ER +++  L      +
Sbjct: 246 NRRIIMILNGMSSMKERAEESRRLTEWAFRE 276


>gi|304391674|ref|ZP_07373616.1| D-alanyl-D-alanine carboxypeptidase DacC [Ahrensia sp. R2A130]
 gi|303295903|gb|EFL90261.1| D-alanyl-D-alanine carboxypeptidase DacC [Ahrensia sp. R2A130]
          Length = 384

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 74/252 (29%), Positives = 130/252 (51%), Gaps = 7/252 (2%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           + A       K  +IV+D     +   K  DE   PAS+ K+MT+ ++F+ ++   L L+
Sbjct: 19  AFAQSFETAAKQ-AIVMDYETGSVLFQKNADELMPPASMAKLMTMEVVFDAVKRGALELD 77

Query: 102 TQIPVSKTAA-----TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
               +SK        T   S ++         E  I  +I +S ND + A  E ++GSE 
Sbjct: 78  DTFTISKDVWQRGGATSGGSTMFADLNDDIALENLIRGVIVQSGNDAAMAIAEGMAGSET 137

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            FA LM+ +A++IG++ + + N++GL D NQ  TAR+  +L   L + +P+ Y+ ++  +
Sbjct: 138 GFAGLMNQRARRIGLEKSNFTNSTGLPDPNQRVTARELGLLARHLIRTYPELYQIYAEPE 197

Query: 217 FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           F +      N N +L ++   DG+KTGYT  SG+ +  S +  D  I+ V+ GM +  ER
Sbjct: 198 FTWNKVRQRNRNPILGRVDGADGLKTGYTEASGYGLTASAKVGDKRIIIVLNGMSSQAER 257

Query: 277 DQKALELITSFL 288
             +A++++    
Sbjct: 258 RNEAIKMMRWAF 269


>gi|32490923|ref|NP_871177.1| hypothetical protein WGLp174 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166129|dbj|BAC24320.1| dacA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 410

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 98/334 (29%), Positives = 164/334 (49%), Gaps = 26/334 (7%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMASE---LHAKP----KYSSIVIDVNKNQMTGF-K 70
           Y  I+ ++ +++   I  + + +    SE   +  KP      S I+ID    Q+     
Sbjct: 11  YIKIFYKKFLEIFKFITIIYLFIGKTYSEQYNVEIKPPKINAESYILIDYYSGQVLAEMN 70

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKT 124
            D  R PASLTKMMT YII  Y++S  +  +  + +SK +        +  S ++LK   
Sbjct: 71  ADSKRLPASLTKMMTSYIIGMYIKSGHIKSSDLVKISKESWMLGNPSLKGSSSMFLKPGD 130

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
             +       +I +S ND   A   +ISG+++ F  LM+N AKK+ ++NT +KN  GL +
Sbjct: 131 LVSISDLSRGIILQSGNDACVAIANYISGNQESFVELMNNYAKKLKLKNTHFKNVHGLDN 190

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTG 243
             Q T+ARD +I+G  L K+  + Y  +  ++F Y N    N N LL  K  N+DGIKTG
Sbjct: 191 AGQFTSARDMSIIGTYLIKDVHEEYIKYKEKEFTYNNIRQLNRNNLLWDKTLNVDGIKTG 250

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL-----------EKKT 292
           +T+ +G+N+V S   ++  +++V++G  +  ERD  +  L+   L            +K 
Sbjct: 251 HTKLAGYNLVASAINENMRLISVILGGRSINERDNGSKSLLNWGLRSFNTILFLRSNEKF 310

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
           +K      K N +   +K  + I   +    + K
Sbjct: 311 VKKYIFFGKTNYAYLGVKNDIYITVPRGKEKEIK 344


>gi|53716694|ref|YP_105744.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei ATCC 23344]
 gi|67641067|ref|ZP_00439854.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei GB8 horse 4]
 gi|124381420|ref|YP_001024168.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei NCTC 10229]
 gi|126447167|ref|YP_001078428.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei NCTC 10247]
 gi|254200552|ref|ZP_04906917.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei FMH]
 gi|254204580|ref|ZP_04910933.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei JHU]
 gi|52422664|gb|AAU46234.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei ATCC 23344]
 gi|124289440|gb|ABM98709.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia mallei NCTC
           10229]
 gi|126240021|gb|ABO03133.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia mallei NCTC
           10247]
 gi|147748164|gb|EDK55239.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei FMH]
 gi|147754166|gb|EDK61230.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei JHU]
 gi|238521922|gb|EEP85370.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei GB8 horse 4]
          Length = 333

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 127/244 (52%), Gaps = 10/244 (4%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S +V+D +  +  G    D  R PASLTK+MT Y+ F+ L+   L  +  + V+      
Sbjct: 58  SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERAALRWDDTVTVAADDIAS 117

Query: 113 --QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             ++ +++YL           +  LI  SAND +    + I GS   FA +M++ A+++G
Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ + + SG+   N  +TA D +IL   L ++FP +Y + S R F Y     TN N+L
Sbjct: 178 MRDSHFVSPSGITTPNHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRY--KD----DPIVAVVMGMPTSQERDQKALELI 284
           L    ++DG+KTG+T  +G+ +V + +           ++AV++G PT ++R   A  L+
Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALL 297

Query: 285 TSFL 288
               
Sbjct: 298 DQGF 301


>gi|160880719|ref|YP_001559687.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           phytofermentans ISDg]
 gi|160429385|gb|ABX42948.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           phytofermentans ISDg]
          Length = 450

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 139/288 (48%), Gaps = 10/288 (3%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           + ++++ +   +   K + +   PAS+TK+MTL +IF+ L S ++ +  Q+ VS+ AA+ 
Sbjct: 99  AVVLMEGSTGHIIYSKNEIKELRPASITKIMTLLLIFDALDSGQIKMTDQVSVSEHAASM 158

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+       +  +  +   SAND S A  EFI+GSE+ F   M+ KAK++GM +
Sbjct: 159 GGSQVFLEPFETQDVDTMLKCISIASANDASVAMAEFIAGSEEAFVSKMNQKAKELGMDH 218

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY--------RNRIIT 225
           T + N  GL   N  T A D A++   L    P+   Y ++   ++            + 
Sbjct: 219 TNFVNCYGLDTDNHYTCALDVALMSRELIMKHPEISNYSTVWMDKFVHTTKRGQTEFGLN 278

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N NKL+     I G+KTG T  + + +  + R     ++AVVM  P ++ R  +A +L+ 
Sbjct: 279 NTNKLIKSYQGITGLKTGSTGLAKYCLSATARRDGMDLIAVVMAAPDTKTRFAEAAKLLN 338

Query: 286 SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAH 333
                 ++        + +   ++KK +      +  ++F  +  K  
Sbjct: 339 YGFANCSIYTDNGEGLE-IPEVAVKKGIQETVGGKLDNKFSYLCMKGS 385


>gi|153940158|ref|YP_001391119.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum F str.
           Langeland]
 gi|152936054|gb|ABS41552.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum F
           str. Langeland]
          Length = 407

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 19/285 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+++I+    ++   K   E   PAS+TK+MT+ +  E + S K+ L  ++ +S+ A 
Sbjct: 56  AKSALLIEPTTGKVIYEKNPHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAK 115

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S + L      T E  +  +   S ND + A GE+++GSE+ F  +M+++A+K+ M
Sbjct: 116 KMGGSTMLLDVGEERTVEDLLKGIAIASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNM 175

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITN 226
           ++T +KN +GL  +   T+A D +I+   L K   Q  KY      +I + R     + N
Sbjct: 176 KDTSFKNCTGLSVEGHKTSAYDISIMSRELLK-HKQILKYTGTYMETISEGRKSPIGLVN 234

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           HNKL+      DG+KTG+T  + + I  + +     ++AV+MG PT + R++ A +L+  
Sbjct: 235 HNKLVRFFKGCDGLKTGFTDEAKYCISATAKKDGVRMLAVIMGAPTYKIRNKDASKLMNY 294

Query: 287 FLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
              K   K            T +KK  +I K+       K   AK
Sbjct: 295 GFSKFECK------------TLVKKGDVISKVPLNSKGDKYFMAK 327


>gi|50084413|ref|YP_045923.1| D-ala-D-ala-carboxypeptidase [Acinetobacter sp. ADP1]
 gi|49530389|emb|CAG68101.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           (precursor) [Acinetobacter sp. ADP1]
          Length = 382

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 81/310 (26%), Positives = 149/310 (48%), Gaps = 19/310 (6%)

Query: 36  FLSIIMISMASELHAKPK----YSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIF 90
            + +   S A+ +   P      S +++D    Q+   K  +E   PAS+TKMMT YII 
Sbjct: 10  LVLLPTFSYAATVLTTPPELNNKSYVLMDYETGQILASKNENEHLAPASMTKMMTSYIIE 69

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSK---LYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + L   +L    Q+ ++++A  +  S    +Y+      T  + +  +I +S ND S A 
Sbjct: 70  QKLLKGELTEGEQVRMNESAWCRGSSSESCMYVPLNGTATVLEMLRGIIVQSGNDASKAM 129

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E ++G+E  FA +M+ +AK++GM NT + N++GL  +   ++A+D AIL   + K+  +
Sbjct: 130 AEHVAGNEGTFAHMMNQEAKRLGMVNTHFMNSTGLPAEGHYSSAKDMAILAQHIIKDSSK 189

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           YY  +S ++F +      N N LL    ++DG+KTG+T  +G+ + TS +     +++V+
Sbjct: 190 YYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTSEAGYCLTTSSKRGPMRLISVI 249

Query: 268 MGMPTSQERDQKALELITSFL-----------EKKTLKHQQTHRKDNLSSTSLKKSLMIK 316
            G  +  ER  +   L+                +   K +    K+N     L ++  + 
Sbjct: 250 FGTTSVNERANQTRTLLAWGFSNFETVNVQPANQVLAKAKVWFGKENEVQIGLAENFNVT 309

Query: 317 KLKRTYSQFK 326
             K    + K
Sbjct: 310 MPKGQADKIK 319


>gi|304391580|ref|ZP_07373522.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Ahrensia sp.
           R2A130]
 gi|303295809|gb|EFL90167.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Ahrensia sp.
           R2A130]
          Length = 480

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 119/308 (38%), Positives = 183/308 (59%), Gaps = 10/308 (3%)

Query: 18  PYGSIYIQRNIQLMGKILFLSIIMISMASELHAK------PKYSSIVIDVNKNQMTGFKQ 71
              +  ++    L      +    + M  +  AK      P+Y++ VID    ++   + 
Sbjct: 7   STSAAAMRLVFTLFLSTFLVLSFQLMMTGDAEAKRKKKGNPRYAAYVIDAKTGKVIFSRN 66

Query: 72  -DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
            +  RYPASLTKMMTLY++FE +++ +++  T++ +SK  + Q PSK+ L+     + +Q
Sbjct: 67  GNARRYPASLTKMMTLYLVFEDMKAGRINGKTRLVMSKKGSLQQPSKIGLRAGQSISMDQ 126

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            + +LIT+SANDV+TA G  +SGSE +FA  M+ KA+++GM  T +KNA+GL  + Q+TT
Sbjct: 127 AVKSLITKSANDVATAIGGQLSGSEVEFAKRMTRKARQLGMSRTTFKNANGLTARGQVTT 186

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           A D A LG+ LR++FP+ YK FS R F+   R   NHNKLL ++  +DGIKTGYTR SGF
Sbjct: 187 AADMAKLGMALREHFPRKYKLFSTRVFKLGKRRYGNHNKLLGRVRGVDGIKTGYTRASGF 246

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLK 310
           N+V+S++     IVAVVMG  + + R+     LI   L K +   Q   R+    +T  +
Sbjct: 247 NLVSSVQTGGRSIVAVVMGGRSGRSRNAHMQTLIKRHLRKASRGKQ---RRVVARATGSR 303

Query: 311 KSLMIKKL 318
            S+  KK+
Sbjct: 304 GSVATKKV 311


>gi|325289983|ref|YP_004266164.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965384|gb|ADY56163.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 389

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 77/273 (28%), Positives = 139/273 (50%), Gaps = 8/273 (2%)

Query: 30  LMGKILFLSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMM 84
           L+  ++ +S   +     L A        S+I+ID +  ++   K    R  PAS+TK+M
Sbjct: 11  LISLVIAVSCFFMYDVEPLMAANIETSAGSAILIDASSGKVLYEKDAHKRLAPASVTKLM 70

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TL I  E L+S K++L   +  S+ A +   S++YL+     + E+ ++++   SAND  
Sbjct: 71  TLLIAAEALESGKVNLKDTVTASERACSMGGSQIYLEVGEKLSLEEMLISIAVGSANDAC 130

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  E I+GS ++F   M+ KAKK+G+ +T + N +GL  +   T+A D AI+     K 
Sbjct: 131 VAVAEHINGSLEEFVHQMNEKAKKLGLVDTNFINDNGLPAEGHYTSAYDLAIIAKESLK- 189

Query: 205 FPQYYKYFSIRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           +P   K  SI+++  R     + N NKLL       G+KTG+T+ + + + +++      
Sbjct: 190 YPLISKLTSIKEYDLRGGKFKLYNTNKLLWWYEGTSGLKTGWTQEAKYCLASTVERNGLK 249

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLKH 295
           ++ VVM +P  +    ++++L        + K 
Sbjct: 250 LICVVMAVPEVRGHFAESMKLYNYGFANYSYKK 282


>gi|15895333|ref|NP_348682.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum
           ATCC 824]
 gi|15025050|gb|AAK80022.1|AE007709_6 D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum
           ATCC 824]
 gi|325509478|gb|ADZ21114.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum EA
           2018]
          Length = 404

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 81/284 (28%), Positives = 144/284 (50%), Gaps = 14/284 (4%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I+++ +   +   K   E   PAS+TK+MT+ +  E + S K+ L  ++ VS+ A 
Sbjct: 51  AKSAILLEPSTGAIIYEKNSHEKFAPASVTKIMTMLLTMEAVDSGKIKLTDKVTVSENAK 110

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S + L      T E+ +  +   S ND + A  E++ GS++ F  +M+ KA++IGM
Sbjct: 111 KMGGSSMLLDTGEVRTVEELLKGIAIASGNDAAVAMAEYLGGSQENFVNMMNKKAQEIGM 170

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITN 226
           ++T +KN +GL+    +TTA D +++   L K  P+  K+      +I + R     + N
Sbjct: 171 KDTSFKNCTGLNADGHMTTAYDISLMSRELLK-HPKILKFTGTYMETISEGRKTPIALVN 229

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           HNKL+      DG+KTG+T  + + I  +    +  ++A++MG PT + R++ A  L+  
Sbjct: 230 HNKLVRFFKGCDGLKTGFTDEAKYCISATACKDNVRMLAIIMGAPTYKVRNRDASMLMNY 289

Query: 287 FLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
              K T K  +   KD++      K + + K    Y   K +D 
Sbjct: 290 GFSKFTAK--KVVEKDSVV-----KKVALNKKGDKYFLIKAVDD 326


>gi|39935841|ref|NP_948117.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris CGA009]
 gi|39649695|emb|CAE28216.1| penicillin binding protein [Rhodopseudomonas palustris CGA009]
          Length = 413

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 119/244 (48%), Gaps = 6/244 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I++D     +   K  DE R P+S+ K+MT+  +F  L++  L L  +  VS+ A 
Sbjct: 53  APSAILVDAESGSVLFEKNADELRAPSSMMKLMTVETVFHLLKTGDLQLTQEYRVSENAW 112

Query: 112 TQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
                    S ++ +  +  + +  +   I +S ND      E I+GSE  F   M+ +A
Sbjct: 113 RNGGAPAGGSTMFAEIHSIISVDNLLHGAIIQSGNDSCMVLAEGIAGSEAAFVEQMTKRA 172

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
           + IG+  + + N++GL + +   + R+ A L   +   +P+YY  F  ++F +     TN
Sbjct: 173 RAIGLTQSTFANSTGLPNPDNKMSVRELAKLARHIILTYPEYYPLFGEKEFTWNKIRQTN 232

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            N LLN M   DG KTGYT+  G+ +V S       ++ VV G+  + +R  +A +L+  
Sbjct: 233 RNPLLNAMPGADGFKTGYTKEGGYGMVGSAVQNGMRLIVVVNGLDDADDRASEAKKLLEW 292

Query: 287 FLEK 290
               
Sbjct: 293 GFRN 296


>gi|115524870|ref|YP_781781.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisA53]
 gi|115518817|gb|ABJ06801.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisA53]
          Length = 418

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 81/350 (23%), Positives = 149/350 (42%), Gaps = 31/350 (8%)

Query: 13  TFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHA-----------------KPKYS 55
           TF +   G I      ++   +L LS  + S    L A                     +
Sbjct: 2   TFFSIASGKIASLPLRRIAMAVL-LSFAVGSAGVALAANKSVQGATAAKDDGGYDADAPT 60

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +I+I+ +   +   K  DE R P+S+ K+MT+  +F  LQ   + L  +  VS+ +  + 
Sbjct: 61  AILIEASSGSVLFEKNADELRAPSSMMKLMTVEYVFHALQQGDIKLTDEFKVSENSWRKG 120

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S ++ +  +  + E  +   I +S ND      E ++G E  FA  ++ +A+++
Sbjct: 121 GAPAGGSTMFAEIHSRVSVENLLRGAIIQSGNDSCMVLAEGLAGGESAFAEKLTQRAREL 180

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+  + + N++GL D     + R+   L   L   +P YYK F  R+F +      N N 
Sbjct: 181 GLPRSTFANSNGLPDPGNKMSVRELGKLARHLILTYPDYYKIFGEREFTWNKIRQQNRNP 240

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF-- 287
           LL  +   DG+KTG+T++ G+ +V S       ++ VV G+  + +R Q+A +++     
Sbjct: 241 LLTMLEGADGLKTGFTKDGGYGMVGSAEQNGMRLIVVVNGLEDADDRAQEAKKILEWGFR 300

Query: 288 -LEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
             E +TL   Q    D +    +           +    K +  K  S +
Sbjct: 301 NFETRTLFKPQ----DTVGYAKVFGGESRSVKLTSTEPVKVMVQKNGSDK 346


>gi|168184531|ref|ZP_02619195.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf]
 gi|237795263|ref|YP_002862815.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Ba4
           str. 657]
 gi|182672360|gb|EDT84321.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf]
 gi|229263748|gb|ACQ54781.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Ba4
           str. 657]
          Length = 407

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 83/285 (29%), Positives = 142/285 (49%), Gaps = 19/285 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+++I+    ++   K   E   PAS+TK+MT+ +  E + S K+ L  ++ +S+ A 
Sbjct: 56  AKSALLIEPTTGKVIYEKNPHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAK 115

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S + L      T E+ +  +   S ND + A GE+++GSE+ F  +M+++A+K+ M
Sbjct: 116 KMGGSTMLLDVGEERTVEELLKGIAIASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNM 175

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITN 226
           ++T +KN +GL  +   T+A D AI+   L K   Q  KY      +I + R     + N
Sbjct: 176 KDTSFKNCTGLSAEGHKTSAYDIAIMSRELLK-HKQILKYTGTYMETISEGRKSPIGLVN 234

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           HNKL+      DG+KTG+T  + + I  + +     ++AV+MG PT + R++ A +L+  
Sbjct: 235 HNKLVRFFKGCDGLKTGFTDEAKYCISATAKKDGVRMLAVIMGAPTYKIRNKDASKLMNY 294

Query: 287 FLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
              K   K            T +KK  +I K+       K   AK
Sbjct: 295 GFSKFECK------------TLVKKGDVISKVPLNSKGDKYFMAK 327


>gi|170760218|ref|YP_001787185.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169407207|gb|ACA55618.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A3
           str. Loch Maree]
          Length = 407

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 19/285 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+++I+    ++   K   E   PAS+TK+MT+ +  E + S K+ L  ++ +S+ A 
Sbjct: 56  AKSALLIEPTTGKVIYEKNSHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAK 115

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S + L      T E  +  +   S ND + A GE+++GSE+ F  +M+++A+K+ M
Sbjct: 116 KMGGSTMLLDVGEERTVEDLLKGIAIASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNM 175

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITN 226
           ++T +KN +GL  +   T+A D +I+   L K   Q  KY      +I + R     + N
Sbjct: 176 KDTSFKNCTGLSAEGHKTSAYDISIMSRELLK-HKQILKYTGTYMETISEGRKSPIGLVN 234

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           HNKL+      DG+KTG+T  + + I  + +     ++AV+MG PT + R++ A +L+  
Sbjct: 235 HNKLVRFFKGCDGLKTGFTDEAKYCISATAKKDGVRMLAVIMGAPTYKIRNKDASKLMNY 294

Query: 287 FLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
              K   K            T +KK  +I K+       K   AK
Sbjct: 295 GFSKFECK------------TLVKKGDVISKVPLNSKGDKYFMAK 327


>gi|15604254|ref|NP_220770.1| penicillin-binding protein DACF precursor (dacF) [Rickettsia
           prowazekii str. Madrid E]
 gi|3860946|emb|CAA14846.1| PENICILLIN-BINDING PROTEIN DACF PRECURSOR (dacF) [Rickettsia
           prowazekii]
 gi|292572000|gb|ADE29915.1| Penicillin-binding protein dacF precursor [Rickettsia prowazekii
           Rp22]
          Length = 306

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 109/300 (36%), Positives = 173/300 (57%), Gaps = 7/300 (2%)

Query: 25  QRNIQLMGKILFLSIIMISMASEL----HAKPKYSSIVIDVNKNQMTGFKQDEPR-YPAS 79
           +R +     IL      IS A ++    +  P  +S+VID    ++      + R YPAS
Sbjct: 3   RRFLLPYIFILIFCFAPISEAKKIVKNTNKHPIQTSLVIDAKNGKVLQAHNAQVRIYPAS 62

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LTK+MTLY+IFE ++S+KL L+ ++ VS  A+     KL L+   + T  + I  LI +S
Sbjct: 63  LTKLMTLYLIFEAIESRKLSLDKKLLVSAKASKMPHCKLGLRAGDHITVREAINGLIIKS 122

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           ANDV+    E + GSEK FA LM+ +AK +GM+NT +KNASGLHD  Q TTARD A L I
Sbjct: 123 ANDVAVTVAEGMKGSEKAFAHLMNVRAKTLGMKNTFFKNASGLHDPFQQTTARDIAKLAI 182

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            L++++P+YY  FS   F +R  ++  HN +       +G+KTG+   +G+N+VT+    
Sbjct: 183 ALKRDYPKYYPLFSKTHFVFRGNVVNGHNSVTKHYQGAEGMKTGFHTPAGYNLVTTASRN 242

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR--KDNLSSTSLKKSLMIKK 317
           +  ++AV+ G  ++  RDQK + L+      KT+  + + +   +N ++T  K  ++ +K
Sbjct: 243 NKSLIAVITGGKSAASRDQKMMRLLDHHFGVKTITSKPSIKLASNNKANTKAKSKIIKRK 302


>gi|118590830|ref|ZP_01548230.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein [Stappia
           aggregata IAM 12614]
 gi|118436352|gb|EAV42993.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein [Stappia
           aggregata IAM 12614]
          Length = 295

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 92/250 (36%), Positives = 151/250 (60%), Gaps = 1/250 (0%)

Query: 39  IIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKK 97
           +  ++ A E   +  +S++V++ +  +       D PRYPASL+KMMTLY++FE +   +
Sbjct: 45  LPAVAYAPETAVERGFSALVLNASTGEELYAVDADAPRYPASLSKMMTLYLLFEAVSEGR 104

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
             L+T + VS  AA++ P+K+ LK  +  T E+   AL  +SANDV+    E ++GSE  
Sbjct: 105 YSLSTPLSVSAKAASEPPAKIGLKAGSTITVEEAARALAVKSANDVAIVVAENLAGSEAA 164

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           FA  M+++A+ +G+  T + NA+GL D  Q+++ARD A+LG+ L++ FPQY  Y+  + F
Sbjct: 165 FARQMTSQARALGLSRTRFVNATGLPDPAQVSSARDMAVLGLTLKRRFPQYASYYRAKSF 224

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
            Y  R     N L+ K+  +DG+KTGY R SG+N+V +       ++ VVMG  +   RD
Sbjct: 225 SYNGRTFRATNNLVGKVAGVDGLKTGYIRMSGYNLVATANRGGKRLIVVVMGGASEAARD 284

Query: 278 QKALELITSF 287
           ++   LI ++
Sbjct: 285 KEVTRLIEAY 294


>gi|325265744|ref|ZP_08132433.1| D-alanyl-D-alanine carboxypeptidase DacA [Kingella denitrificans
           ATCC 33394]
 gi|324982875|gb|EGC18498.1| D-alanyl-D-alanine carboxypeptidase DacA [Kingella denitrificans
           ATCC 33394]
          Length = 489

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 70/254 (27%), Positives = 131/254 (51%), Gaps = 4/254 (1%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQS 95
           LS+     A  + A    +  V D    Q+   K    P  PASLT +M  Y+ F+ L +
Sbjct: 130 LSLSATQSAPHIQAA---AYAVYDAQSRQVLAEKNFALPIEPASLTHLMVAYLAFKALDA 186

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
           + +    +  VS+ A     ++++L+      T   +  ++  S ND +    E ++GSE
Sbjct: 187 QTITPKQEWTVSENAWKSAGNRMFLERGGKANTIDLLHGMLILSGNDAALTLAEGMAGSE 246

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             F   M+ +A+++GM+ T ++N +GLH    +++ +D  IL   L ++FP YY+ F+ +
Sbjct: 247 SAFVAQMNAEAERLGMRQTHFENVTGLHSPKHVSSVQDLLILSQALLRDFPDYYQIFAKK 306

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
            F Y      NHN LL +  ++DG+K GY+  +G++++T        I ++V+G  +++ 
Sbjct: 307 TFTYNKITQPNHNLLLFRNDDVDGLKAGYSDIAGYHLITGSHRNGRRIFSIVIGASSNEA 366

Query: 276 RDQKALELITSFLE 289
           R  ++ +L+   LE
Sbjct: 367 RAIESRKLLNYALE 380


>gi|85858430|ref|YP_460632.1| D-alanyl-D-alanine serine-type carboxypeptidase [Syntrophus
           aciditrophicus SB]
 gi|85721521|gb|ABC76464.1| D-alanyl-D-alanine serine-type carboxypeptidase [Syntrophus
           aciditrophicus SB]
          Length = 310

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 134/246 (54%), Gaps = 1/246 (0%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           +    A    SSI++D+   ++   +  D+P  PASLTK+++LY+ +E +   ++     
Sbjct: 52  SPRNTAPEIKSSILMDMTDRRVLYEQNADQPIQPASLTKVLSLYLTYEAMAQGRVRWLDS 111

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           + VS+ A   + S++Y++       E  I  +   SAND S A  E ++G+  +F   M+
Sbjct: 112 VVVSQAARQADGSRMYIEAGERVPLETLIKGMTVISANDASVAVAEHVAGNVDRFVERMN 171

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI 223
            KA ++GM +++++  +GL  + Q TTARD  IL     + FP      S++ + Y+   
Sbjct: 172 RKAGELGMTHSVFRTPNGLPAEGQYTTARDMMILADAYLRRFPGSLALHSMQYYTYKKIT 231

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
             N N LL K  ++DG+K+G+ R SG+N++ + R  +  ++AVVMG  T + R ++   L
Sbjct: 232 QHNCNALLKKYPDVDGLKSGFVRASGYNLIATARRGNTRLIAVVMGARTPEIRVRETRRL 291

Query: 284 ITSFLE 289
           + +  +
Sbjct: 292 LDAGFQ 297


>gi|227823262|ref|YP_002827234.1| putative D-alanyl-D-alanine carboxypeptidase [Sinorhizobium fredii
           NGR234]
 gi|227342263|gb|ACP26481.1| putative D-alanyl-D-alanine carboxypeptidase [Sinorhizobium fredii
           NGR234]
          Length = 372

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 99/308 (32%), Positives = 167/308 (54%), Gaps = 11/308 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLT 81
           + RN      +L      ++ A  + A P+   +V+DV   ++    QD  +  YPASLT
Sbjct: 7   LMRNRAGAIGVLAGVCAALAAALPVSANPR---LVVDVATLKV-YEHQDIFQKWYPASLT 62

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT Y  F+ +++ +L L + + ++K AA++ PSK++ K     T +  +  ++ +SAN
Sbjct: 63  KLMTAYTTFQAIKAGQLTLESPVVMTKNAASEPPSKMFYKPGQAMTLDSALKMMLVKSAN 122

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           DV+ A  E +SGSE+ F   M+ +A++IGM ++ + NA+GL  + Q TTARD A+L I L
Sbjct: 123 DVAVAIAETVSGSEQAFIDRMNAEARRIGMTSSHFINANGLPGQGQYTTARDLAVLAITL 182

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           ++ FPQY  YFS+  F    +   N+N L+ +    DG+KTG+   SGFN V+S      
Sbjct: 183 KREFPQYASYFSLEGFTTGKKDYANYNMLIGRFEGADGMKTGFICASGFNQVSSATRAGR 242

Query: 262 PIVAVVMGMPTSQERDQKALELI-----TSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIK 316
            +V+VV+G  +   R  ++  L+     TS  EK +L     + +       + K +  K
Sbjct: 243 SVVSVVLGEDSLGARADESARLLQMALTTSAAEKPSLTAIAPYGESREVVADVSKEICSK 302

Query: 317 KLKRTYSQ 324
           +  +  S+
Sbjct: 303 QAAKVRSE 310


>gi|217418923|ref|ZP_03450430.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           576]
 gi|226198000|ref|ZP_03793572.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|217398227|gb|EEC38242.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           576]
 gi|225929876|gb|EEH25891.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei Pakistan 9]
          Length = 333

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 72/244 (29%), Positives = 127/244 (52%), Gaps = 10/244 (4%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S +V+D +  +  G    D  R PASLTK+MT Y+ F+ L+   L  +  + V+      
Sbjct: 58  SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERAALRWDDTVTVAADDIAS 117

Query: 113 --QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             ++ +++YL           +  LI  SAND +    + I GS   FA +M++ A+++G
Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ + + SG+   +  +TA D +IL   L ++FP +Y + S R F Y     TN N+L
Sbjct: 178 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRY--KD----DPIVAVVMGMPTSQERDQKALELI 284
           L    ++DG+KTG+T  +G+ +V + +           ++AV++G PT ++R   A  L+
Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALL 297

Query: 285 TSFL 288
               
Sbjct: 298 DQGF 301


>gi|168180436|ref|ZP_02615100.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum NCTC
           2916]
 gi|226949102|ref|YP_002804193.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A2
           str. Kyoto]
 gi|182668867|gb|EDT80845.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum NCTC
           2916]
 gi|226842614|gb|ACO85280.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A2
           str. Kyoto]
          Length = 407

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 83/285 (29%), Positives = 142/285 (49%), Gaps = 19/285 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+++I+    ++   K   E   PAS+TK+MT+ +  E + S K+ L  ++ +S+ A 
Sbjct: 56  AKSALLIEPTTGKVIYEKNPHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAK 115

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S + L      T E+ +  +   S ND + A GE+++GSE+ F  +M+++A+K+ M
Sbjct: 116 KMGGSTMLLDVGEERTVEELLKGIAIASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNM 175

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITN 226
           ++T +KN +GL  +   T+A D AI+   L K   Q  KY      +I + R     + N
Sbjct: 176 KDTSFKNCTGLSAEGHKTSAYDIAIMSRELLK-HKQILKYTGTYMETISEGRKSPIGLVN 234

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           HNKL+      DG+KTG+T  + + I  + +     ++AV+MG PT + R++ A +L+  
Sbjct: 235 HNKLVRFFKGCDGLKTGFTDEAKYCISATAKKDGVRMLAVIMGAPTYKIRNKDASKLMNY 294

Query: 287 FLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
              K   K            T +KK  +I K+       K   AK
Sbjct: 295 GFSKFECK------------TLVKKGDVISKVPLNSKGDKYFMAK 327


>gi|167828274|ref|ZP_02459745.1| family S11 unassigned peptidase [Burkholderia pseudomallei 9]
          Length = 266

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 72/246 (29%), Positives = 127/246 (51%), Gaps = 10/246 (4%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S +V+D +  +  G    D  R PASLTK+MT Y+ F+ L+   L  +  + V+    
Sbjct: 1   AASWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERAALRWDDTVTVAADDI 60

Query: 112 T---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
               ++ +++YL           +  LI  SAND +    + I GS   FA +M++ A++
Sbjct: 61  ASVGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARR 120

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           +GM+++ + + SG+   +  +TA D +IL   L ++FP +Y + S R F Y     TN N
Sbjct: 121 LGMRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKN 180

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRY--KD----DPIVAVVMGMPTSQERDQKALE 282
           +LL    ++DG+KTG+T  +G+ +V + +           ++AV++G PT ++R   A  
Sbjct: 181 RLLGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARA 240

Query: 283 LITSFL 288
           L+    
Sbjct: 241 LLDQGF 246


>gi|119384494|ref|YP_915550.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paracoccus denitrificans
           PD1222]
 gi|119374261|gb|ABL69854.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paracoccus denitrificans
           PD1222]
          Length = 568

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 99/277 (35%), Positives = 149/277 (53%), Gaps = 7/277 (2%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTK 82
           I RN++L   ILF   + +++A+   A         D    Q +     D   +PASLTK
Sbjct: 16  IARNVRLGLMILFAWALPMAVAAAPFAAFVM-----DARTGQEVYAQNADTRLHPASLTK 70

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           MMTLY+ F  ++  ++ L+++  VS  AA Q PS+L LK          I A   +SAND
Sbjct: 71  MMTLYMAFNAIERGQVRLDSKFLVSSHAAAQPPSRLGLKPGQRIELRYLIRAAAVKSAND 130

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            +T  GE ++GSE KFA  M+  A+ +GM+NT ++NA+GL  +   +TARD  +LG  L 
Sbjct: 131 AATVIGEGLAGSEAKFAAQMTQMARALGMRNTNFRNANGLTAEGHYSTARDMTVLGRRLF 190

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNK-LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
            +FPQYY  FS R        + + NK  L+     DGIKTGYTR +GFN+  S +    
Sbjct: 191 YDFPQYYSIFSRRSADAGIATVASTNKRFLDSYEGADGIKTGYTRAAGFNLTASAKRGSK 250

Query: 262 PIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
            I+A V+G  ++  R+Q   +L+ +   K   + ++ 
Sbjct: 251 RIIATVLGGTSTAHRNQVMAQLLDAGFGKAPTRVREV 287


>gi|192291489|ref|YP_001992094.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris TIE-1]
 gi|192285238|gb|ACF01619.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris TIE-1]
          Length = 413

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 119/244 (48%), Gaps = 6/244 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I++D     +   K  DE R P+S+ K+MT+  +F  L++  L L  +  VS+ A 
Sbjct: 53  APSAILVDAESGSVLFEKNADELRAPSSMMKLMTVETVFHLLKTGDLQLTQEYRVSENAW 112

Query: 112 TQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
                    S ++ +  +  + +  +   I +S ND      E I+GSE  F   M+ +A
Sbjct: 113 RNGGAPAGGSTMFAEIHSIISVDNLLHGAIIQSGNDSCMVLAEGIAGSEAAFVEQMTKRA 172

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
           + IG+  + + N++GL + +   + R+ A L   +   +P+YY  F  ++F +     TN
Sbjct: 173 RAIGLTQSTFANSTGLPNPDNKMSVRELAKLARHIILTYPEYYPLFGEKEFTWNKIRQTN 232

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            N LLN M   DG KTGYT+  G+ +V S       ++ VV G+  + +R  +A +L+  
Sbjct: 233 RNPLLNAMPGADGFKTGYTKEGGYGMVGSAVQNGMRLIVVVNGLDDADDRASEAKKLLEW 292

Query: 287 FLEK 290
               
Sbjct: 293 GFRN 296


>gi|90578192|ref|ZP_01234003.1| D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14]
 gi|90441278|gb|EAS66458.1| D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14]
          Length = 459

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/266 (28%), Positives = 134/266 (50%), Gaps = 9/266 (3%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
               L+A+   + I+ID N  Q+           PAS TK+M +YI+ + L    + L++
Sbjct: 97  FPPSLNAR---AFILIDANTGQIIASNNANMRMAPASTTKLMLMYIVEQKLADGVISLDS 153

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           ++ V + A     S+++LK  +Y + +  I  +I  S ND +     +++GS+  F  +M
Sbjct: 154 KVLVPEVAWRTGGSRMFLKPGSYVSVKDLIQGVIVESGNDAAVTLANYVAGSQSSFVSMM 213

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
           +  A K+GM NT +    GL      +TA D  +LG  +  ++PQY+ +FS + F Y + 
Sbjct: 214 NATAVKLGMHNTHFTTVMGLPAPAHFSTAYDLGLLGEHIMNDYPQYFHFFSQKYFEYNHI 273

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP--IVAVVMGMPTSQERDQKA 280
              N N+LL       G+KTG T  +G+++V+S +  D+P  +VAVV+G  +  +   ++
Sbjct: 274 RQPNFNRLLFTYQYATGMKTGSTEAAGYSLVSSAKMPDNPMNLVAVVLGTQSLNDVAAQS 333

Query: 281 LELIT---SFLEKKTLKHQQTHRKDN 303
             L      F ++ TL    +   + 
Sbjct: 334 KGLFNYGFRFFKQDTLYKADSKLSEQ 359


>gi|304391426|ref|ZP_07373368.1| penicillin-binding protein [Ahrensia sp. R2A130]
 gi|303295655|gb|EFL90013.1| penicillin-binding protein [Ahrensia sp. R2A130]
          Length = 289

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 107/266 (40%), Positives = 167/266 (62%), Gaps = 4/266 (1%)

Query: 26  RNIQLMGKILFLSIIMIS---MASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLT 81
           R + +    LF +    S    A       +Y++IVID    ++    + D  R+PASLT
Sbjct: 22  RALVIAALALFATGCTTSSVITAPYEPPTARYAAIVIDAKSGKVLHNTRADAIRFPASLT 81

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           KMMT+Y+ FE L  +++ LN++IPVS  AA++  SKLYLK       +  + AL  +SAN
Sbjct: 82  KMMTMYMAFEALSRRRISLNSEIPVSSYAASKPASKLYLKAGETINVDTALQALAVKSAN 141

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           DV+TA  EF+ GSE  FA +M+ +A+ +GM++T ++NASGL D+ Q+TTARD A L + L
Sbjct: 142 DVATAMAEFLGGSEATFARMMTARARSLGMRSTTFRNASGLPDRLQVTTARDMATLSLAL 201

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           +K +PQY+ YF    F ++ + I  HN++L  +   +GIKTGYTR SGFN+ TS++  + 
Sbjct: 202 QKRYPQYFHYFGKSTFVWKGKTIRGHNRVLGMLKGANGIKTGYTRASGFNLATSVKRPNK 261

Query: 262 PIVAVVMGMPTSQERDQKALELITSF 287
            +V V++G  + + R++  +EL+ +F
Sbjct: 262 HLVGVILGEDSGKVRNRHMVELLKAF 287


>gi|323164088|gb|EFZ49896.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella sonnei 53G]
 gi|332761340|gb|EGJ91626.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri
           2747-71]
          Length = 284

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 77/281 (27%), Positives = 131/281 (46%), Gaps = 19/281 (6%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNKNQMTGF 69
           +I+  R ++ +     L    IS A             +      S I+ID N  ++   
Sbjct: 3   TIFSARIMKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAE 62

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKE 122
           +  D  R PASLTKMMT Y+I + +++ K      + +   A        +  S ++LK 
Sbjct: 63  QNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKP 122

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
                  Q I  +  +S ND   A  +F +GS+  F  LM++    +G++NT ++   GL
Sbjct: 123 GMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGL 182

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIK 241
               Q ++ARD A++G  L ++ P  Y  +  ++F +      N N LL     N+DGIK
Sbjct: 183 DADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIK 242

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           TG+T  +G+N+V S       +++ VMG  T + R+ ++  
Sbjct: 243 TGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKN 283


>gi|323139480|ref|ZP_08074528.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylocystis
           sp. ATCC 49242]
 gi|322395282|gb|EFX97835.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylocystis
           sp. ATCC 49242]
          Length = 530

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 89/270 (32%), Positives = 147/270 (54%), Gaps = 6/270 (2%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTK 82
           ++R  +     +FL+ ++   A    A P   S+VIDV   Q+    Q     YPASLTK
Sbjct: 4   MKRLRRFGALAIFLAAVVT--AGRAGATP---SLVIDVASGQVLEQDQATASWYPASLTK 58

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT Y+  + +++ ++ ++T + +S  A    PSK+  +  +  T    ++ L+ +SAND
Sbjct: 59  LMTAYVALDAVRAGRISMDTPLMMSPRACRMAPSKMGFRAGSEVTLHNALIMLMVKSAND 118

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
           ++ A  E +SGS + FA  M+  +  +GM  + + N +GL D  Q+T+ARD AILG  L 
Sbjct: 119 IAVAIAEGVSGSVEAFADEMNRASANLGMTQSQWVNPNGLPDSRQVTSARDLAILGRALY 178

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
             FP+Y   F+I   +   R+   HN LL +    DG+KTG+T  +GFN+V S  +    
Sbjct: 179 LQFPEYAYLFNIGAMQIGGRVHPTHNGLLGRYPGADGMKTGFTCPAGFNLVASATHGGQR 238

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKT 292
           ++AVV+G P++  R  KA  L+    +  +
Sbjct: 239 LIAVVLGAPSAAARTAKAAALLDRAFQTGS 268


>gi|303325746|ref|ZP_07356189.1| D-alanyl-D-alanine carboxypeptidase family protein [Desulfovibrio
           sp. 3_1_syn3]
 gi|302863662|gb|EFL86593.1| D-alanyl-D-alanine carboxypeptidase family protein [Desulfovibrio
           sp. 3_1_syn3]
          Length = 375

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 70/252 (27%), Positives = 134/252 (53%), Gaps = 7/252 (2%)

Query: 45  ASELHAKPKY------SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKK 97
           A    A P +      S+I+ D++ + +   +  DE   PASLTK++++++  +++ +  
Sbjct: 35  AVAAPAVPPHGFVGVCSAILYDLDNDAILFEQNADEHIPPASLTKVLSMFLALDHISAGH 94

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
              ++ +PVS+ AA    S++ L+ +     E+ ++ +   S ND S A  EF+ GS   
Sbjct: 95  AAFDSVVPVSRAAARTGGSRMGLRNREQVPLEELLMGMAVSSGNDASMAVAEFVGGSAPA 154

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F  +M+ KA+ +GM+++ ++N  GL  + Q TTARD   L     + +P   K+ +    
Sbjct: 155 FVNMMNVKARTLGMRDSRFRNPHGLPAQGQYTTARDMLTLARAYLRAYPWALKFHNTHVL 214

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
            ++ R+  N N LL +    DG+KTG+   SG+N++ +    D  ++AV++G P  + R 
Sbjct: 215 NHQGRVTWNKNPLLGQYPGADGLKTGWVNASGYNLIFTASRGDKRLLAVILGAPDVRVRG 274

Query: 278 QKALELITSFLE 289
            +A  L+ +  +
Sbjct: 275 TEACRLLDAGFQ 286


>gi|302389347|ref|YP_003825168.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter
           oceani DSM 16646]
 gi|302199975|gb|ADL07545.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter
           oceani DSM 16646]
          Length = 410

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 139/305 (45%), Gaps = 16/305 (5%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQS 95
            S   ++ A    +    + I++DV   ++   K       PAS TK+MT  I  E    
Sbjct: 18  ASTSKVTAAPSPPSIVGTAGILMDVKTGKVLYEKNAHLKLEPASTTKIMTTVIALE---- 73

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
            K  L+  +   +     + +++YL+E    T EQ +  ++  S ND + A  E I+GS 
Sbjct: 74  -KGKLSDTVVTGREPTLADGTRIYLEEGEKLTLEQMLYGMMLNSGNDAAVAIAEHIAGSV 132

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
            +FA LM+ KA++IG +NT + N SGL DKN  TTA D A++      N P++ K  S +
Sbjct: 133 PEFAKLMNEKAREIGAKNTNFVNPSGLPDKNHYTTAYDLALISRYALLNHPEFRKIVSTK 192

Query: 216 KFRYR------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            F+        +R++ NHNK+L +    DG+KTGYTR++G   V S       ++AVV+ 
Sbjct: 193 TFKIPWQGKEWDRLLINHNKMLWRYEGTDGVKTGYTRSAGQTFVASATRNGWQLLAVVLK 252

Query: 270 MPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKID 329
                     A  L+    +    K    ++   +    +K    +  L    S F  + 
Sbjct: 253 SQGRNI-YSDAQALLDYGFDNFE-KKDVINKGQIIDKIDVKYGTPVDLL--AASDFTAVV 308

Query: 330 AKAHS 334
            K   
Sbjct: 309 EKGSG 313


>gi|167723745|ref|ZP_02406981.1| family S11 unassigned peptidase [Burkholderia pseudomallei DM98]
          Length = 318

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/244 (29%), Positives = 127/244 (52%), Gaps = 10/244 (4%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S +V+D +  +  G    D  R PASLTK+MT Y+ F+ L+   L  +  + V+      
Sbjct: 58  SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERAALRWDDTVTVAADDIAS 117

Query: 113 --QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             ++ +++YL           +  LI  SAND +    + I GS   FA +M++ A+++G
Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ + + SG+   +  +TA D +IL   L ++FP +Y + S R F Y     TN N+L
Sbjct: 178 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRY--KD----DPIVAVVMGMPTSQERDQKALELI 284
           L    ++DG+KTG+T  +G+ +V + +           ++AV++G PT ++R   A  L+
Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARALL 297

Query: 285 TSFL 288
               
Sbjct: 298 DQGF 301


>gi|220929171|ref|YP_002506080.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           cellulolyticum H10]
 gi|219999499|gb|ACL76100.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           cellulolyticum H10]
          Length = 408

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/263 (27%), Positives = 139/263 (52%), Gaps = 5/263 (1%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++++D    ++   K    R   AS+TK+MT+ ++ E + + +   + ++ VS+ +A
Sbjct: 58  AKSAVLMDAASGKVLTEKNSHERLAIASVTKIMTMLLVMEAIDAGRFTFDEKVSVSEYSA 117

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S+ Y++    FT  + + AL   S+NDV+ A  E +SGSE+ F   M+NKA+ +GM
Sbjct: 118 GMGGSQAYMEPGEVFTVTEMMNALAIHSSNDVAVALAEKVSGSEETFVTDMNNKAQALGM 177

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--ITNHNK 229
           ++T + + +GL+D    +TA D A++   L    P+  ++       +RN    + N NK
Sbjct: 178 KDTKFMDCTGLNDDG-YSTAHDVALMSRELVIKHPKVLQFTGKWHDTFRNGTFDLYNTNK 236

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           L+    N DG+KTG+T  +GFN+  +    +  +++VV+G P S  R  ++ +L+     
Sbjct: 237 LVKFYANCDGLKTGFTNKAGFNLSATTIRNNLRLISVVLGEPDSNTRFAESRKLLDYGFA 296

Query: 290 KKTLKHQQTHRKDNLSSTSLKKS 312
              + +    + + + +  +KK 
Sbjct: 297 NYEVINLD-KKGNVVGNIPVKKG 318


>gi|154497956|ref|ZP_02036334.1| hypothetical protein BACCAP_01936 [Bacteroides capillosus ATCC
           29799]
 gi|150272946|gb|EDN00103.1| hypothetical protein BACCAP_01936 [Bacteroides capillosus ATCC
           29799]
          Length = 392

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 68/267 (25%), Positives = 121/267 (45%), Gaps = 10/267 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPAS 79
           ++R    M   + L +  + +++    +P  S+   I++D    ++   K  DE R  AS
Sbjct: 1   MKRVFAAMTAAV-LCLTWLPLSAGAAGEPGVSASCAILVDAESGRVLMEKNADEERAIAS 59

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MT  +  E        L+  + + K       S +YL+E    T  + +  L+  S
Sbjct: 60  ITKLMTALVAVESTSD----LDRTVTIQKEWTLAEGSSMYLREGEELTLRELLYGLLLVS 115

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND + A   F +G    F   M+ +A+++GM++T + N +GL  +   +TA D A L I
Sbjct: 116 GNDAALAIAGFCAGDTDTFVEWMNLRAQELGMEHTHFVNPNGLPAEGHYSTAADMAKLAI 175

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           ++ +  P   +    +      R +TNHNKLL +     G+KTGYT  +G  +V+     
Sbjct: 176 VVMEQ-PDLAEIVGTKSVTMAGRTMTNHNKLLWRYEGCVGMKTGYTDAAGRTLVSCAERD 234

Query: 260 DDPIVAVVMGMPTSQERDQKALELITS 286
              ++AV +  P          +   S
Sbjct: 235 GQRLIAVTLNAPNDWADHAAMFDYGFS 261


>gi|169351113|ref|ZP_02868051.1| hypothetical protein CLOSPI_01892 [Clostridium spiroforme DSM 1552]
 gi|169292175|gb|EDS74308.1| hypothetical protein CLOSPI_01892 [Clostridium spiroforme DSM 1552]
          Length = 380

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 89/293 (30%), Positives = 154/293 (52%), Gaps = 12/293 (4%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
              +I+ID +  Q+   K  D+  +PAS TK+MT+ I+FE + +KK+  + Q+  SK AA
Sbjct: 31  ASGAILIDADSKQILYDKNADKKLFPASTTKIMTMIIMFEAINNKKISFDDQVTTSKYAA 90

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S++YL+E    + E    ++   SAND S A  E+I+GS  KF  +M+ KAK++ +
Sbjct: 91  SMGGSQVYLEEGENMSLEDMFKSIAIASANDASVAVSEYIAGSTNKFVEMMNQKAKELNL 150

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRK-------NFPQYYKYFSIRKFRYRNRII 224
           +NT ++N +GLHD N  T   D A++   L K       +    Y  + IR+   ++  +
Sbjct: 151 KNTHFENVTGLHDNNHYTCPYDLAMMASYLIKIGGNKLLSVTSLYDSY-IREDTKQSFWL 209

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            N NKLL     +DG+KTGYT+ +G+ +VT+ +     +V VVM     ++R+++   L+
Sbjct: 210 VNTNKLLKLYDGVDGLKTGYTKEAGYCLVTTAKRDGQRLVGVVMKESEPKKRNEEMCNLL 269

Query: 285 TSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLK-RTYSQFKKIDAKAHSTQ 336
              L     K +  ++KD++    +   +    +          I AKA+  +
Sbjct: 270 DYGLNNY--KREIIYKKDSIIEKHVVDKMDNLTINVVCKEDIAYIKAKANDQK 320


>gi|254511090|ref|ZP_05123157.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacteraceae bacterium
           KLH11]
 gi|221534801|gb|EEE37789.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacteraceae bacterium
           KLH11]
          Length = 389

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/257 (29%), Positives = 133/257 (51%), Gaps = 10/257 (3%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++ VID     +   K  D+P  PAS++K+MTLY+ FE L+  +L L+  +PVS+ A 
Sbjct: 29  ARAAYVIDQKTGTVLLSKNADQPLPPASMSKLMTLYVAFEALRDGRLTLDETLPVSEHAM 88

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
           +   S ++L  +     E  +  +I  S ND      E +S  GSE  FA  M+ +A+++
Sbjct: 89  SYGGSTMFLNTQDRVRVEDLLRGIIVLSGNDACVVIAEALSPDGSEAGFARFMTQRAQQM 148

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII---TN 226
           GM ++ + N++G      + +  D A+L   L  +FP+YY  F+  +F +  R      N
Sbjct: 149 GMNDSNFANSNGWPAAGHMMSVHDLAVLADRLITDFPEYYPLFAEEEFEFDGRAPSNSRN 208

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            N LL      DG+KTG+T+ +G+ +V S +  D  +V V+ G+ +  +R ++A  ++  
Sbjct: 209 RNPLLKLGIGADGLKTGHTQEAGYGLVGSAKQGDRRVVFVLSGLDSVGKRAEEAEAVVNW 268

Query: 287 ----FLEKKTLKHQQTH 299
               F+E+   K  +  
Sbjct: 269 SFRNFVERTVAKADEPV 285


>gi|167745582|ref|ZP_02417709.1| hypothetical protein ANACAC_00273 [Anaerostipes caccae DSM 14662]
 gi|317472823|ref|ZP_07932134.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
 gi|167654894|gb|EDR99023.1| hypothetical protein ANACAC_00273 [Anaerostipes caccae DSM 14662]
 gi|316899742|gb|EFV21745.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
          Length = 394

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 81/288 (28%), Positives = 140/288 (48%), Gaps = 11/288 (3%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSK 96
           +++ ++   E       S++V++     +   K  D    PAS+TK+M+L +IFE L   
Sbjct: 28  TLLTVAQDGEGLDLTAKSAVVMEAGSGTILYQKDKDMKLPPASVTKVMSLLLIFEELDKG 87

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
            L  + ++ VS+ AA+   S+++L+     T +  +  ++  SAND   +  E I+GSE 
Sbjct: 88  NLKYSDKVTVSEHAASMGGSQVFLEPGESQTVDTMLKCIVISSANDAVVSMAEHIAGSEG 147

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F   M+ KAK++GM+NT +KN+ GL  K   T+A D A++   L    P  +KY  I  
Sbjct: 148 AFVKRMNEKAKQLGMKNTTFKNSCGLDIKGHETSAYDIALMSRELTTKHPDIFKYTKIWM 207

Query: 217 FRY--------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            ++        +   ++N NKLL + +   G+KTG T  + F +  +       ++AVVM
Sbjct: 208 DKFTHETKKGTKEFGLSNTNKLLKQYNGCTGLKTGSTSTAKFCLSATATRNGVSLIAVVM 267

Query: 269 GMPTSQERDQKALELITSFLEKKTLKHQQTHRKD--NLSSTSLKKSLM 314
               S+ R + A  L+        +    T  KD   ++ T  KK  +
Sbjct: 268 ASDDSKTRVKDASALLDYGFSHCQVMEDHTKAKDIGKIAVTKGKKETV 315


>gi|134299097|ref|YP_001112593.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
           MI-1]
 gi|134051797|gb|ABO49768.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
           MI-1]
          Length = 437

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 131/243 (53%), Gaps = 6/243 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
              +I+++ +  Q+    Q+  P +PAS+TK+M LYI+ E + +  LH    +  SK   
Sbjct: 66  AKGAILVNQDTGQVIYADQEHQPFHPASITKLMVLYILLENIHNGVLHWEDPVQASKKVE 125

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             N +++YL+E    + E+ I A++  SAND + A  E ++GSE  F  +M+ KA ++G+
Sbjct: 126 RINEAQIYLREGEVLSLEEMIKAMVVASANDAAVALAERVAGSEAAFVEIMNAKALELGL 185

Query: 172 QNTIYKNASGLHDK---NQITTARDQAILGILLRKNFPQYYKYF--SIRKFRYRNRIITN 226
           +N+ + NASGL      N   +A D A+L   L + +P+  ++   +    R  +  I N
Sbjct: 186 RNSHFINASGLPASNSYNHYMSAYDIALLAKYLLEEYPEVLEFSRLTTTTIRNGSFPIAN 245

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            N LL     +DG+KTGYT  +G+ +V + +     +++VV+G P+++ R      L+  
Sbjct: 246 TNSLLGIFQGMDGLKTGYTDRAGWCLVATAQRNGQRMISVVLGSPSNEIRKANTTALLNY 305

Query: 287 FLE 289
             +
Sbjct: 306 GFQ 308


>gi|134300784|ref|YP_001114280.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
           MI-1]
 gi|134053484|gb|ABO51455.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
           MI-1]
          Length = 397

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 128/267 (47%), Gaps = 15/267 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
            YS++V+D    Q+   K     R  AS TK+MT  +  E       +LN+   VS+ AA
Sbjct: 62  AYSALVMDAATGQVLFAKNPHQARAIASTTKIMTALVAIECG-----NLNSATSVSQRAA 116

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S +YLK     T EQ +   + RS ND   A  E I+  E  F   M+ KA+++G 
Sbjct: 117 GVEGSSVYLKPNEKLTLEQLLYGALMRSGNDACVAIAEQIAVREDIFVGFMNMKARQLGA 176

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF----RYRNRIITNH 227
           +NT + N++GL + +  ++A D A++     KN P + +  S +          R+++N 
Sbjct: 177 KNTHFCNSNGLPNDHHYSSAYDLALITRAALKN-PVFSRIVSTKTHVIPGTEGKRLLSNT 235

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           NK+L      DG+KTG T  +G  +V+S       ++AVV+    S +R  ++++L+   
Sbjct: 236 NKMLWSYQGADGVKTGTTNAAGKCLVSSASRDGRRLIAVVL---HSDDRWNESIKLLNYG 292

Query: 288 LEKKTLKHQQTHRKDNLSSTSLKKSLM 314
             +   + +        +S  ++  ++
Sbjct: 293 FNRFE-QRRVVDAGKTFASVEVRDGVL 318


>gi|84686497|ref|ZP_01014390.1| D-alanyl-D-alanine carboxypeptidase [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84665410|gb|EAQ11887.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacterales bacterium
           HTCC2654]
          Length = 401

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 153/304 (50%), Gaps = 19/304 (6%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLY 87
           +L+  +L   I + + A E  A+   S+ V+D+  N +   K  + P  PAS++K+MTL 
Sbjct: 9   RLLTTLLAGVIALPAFAFETSAR---SAYVVDLTTNTVLLEKNAQVPLPPASMSKLMTLN 65

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           ++FE L+  ++ L+TQ  VS+ A     S ++L  +   T E+ I  +I  S ND     
Sbjct: 66  MLFEALEDGRVSLDTQFNVSQRAMDMGGSTMFLTTQDRPTVEELIKGIIVLSGNDACVVV 125

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E + G+E  FA +M+ +A+ +GM+N+ + NASG     Q  +  D AIL   L + FPQ
Sbjct: 126 AEGLGGTEDAFASMMTQRARALGMENSTFGNASGWPHPAQRMSTEDLAILAERLIEEFPQ 185

Query: 208 YYKYFSIRKFRYRNRII---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           YY YF I +F Y  R      N N L +     DG+KTG+T+ +G+ +V S    +  +V
Sbjct: 186 YYHYFGIEEFPYDGRAPDNRFNRNPLFDLGLGADGLKTGHTQEAGYGLVGSAMQGNRRVV 245

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
            VV G+ +   R  ++  +I     +  ++            T+++   +I ++     +
Sbjct: 246 LVVSGLDSEAARRSESAAIINFAFRQFVMR------------TAVESGQVIAEIPVWLGE 293

Query: 325 FKKI 328
            + +
Sbjct: 294 AQTV 297


>gi|254501213|ref|ZP_05113364.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii
           DFL-11]
 gi|222437284|gb|EEE43963.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii
           DFL-11]
          Length = 473

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 160/305 (52%), Gaps = 7/305 (2%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYS----SIVIDVNKNQMTGFKQDE-PRYPASLTKM 83
            L G+   L I+  ++   L A P  +     I++D     +   K      YPASLTKM
Sbjct: 4   SLFGRRSALPILAAALGFFLMAAPARAEIGTYILVDARNGAVVDQKNATRKWYPASLTKM 63

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT Y+ F+ ++  ++ L++ +  SK +A + PSK+  K  T FT +  +  ++ +SANDV
Sbjct: 64  MTAYVTFKAIREGRVALDSAVVQSKNSAAEPPSKMGFKVGTKFTIDTALKIILIKSANDV 123

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           S A GE +SGSE  F   M+ +A+++GM NT + N  GL D  Q+TTARD AIL + LRK
Sbjct: 124 SVALGEAVSGSENAFLAEMNAEARRLGMTNTRFTNPHGLPDNRQVTTARDMAILAMALRK 183

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNK-LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           +FP+  +++     R+  + + + N+  L ++   +G+KTGY  NSGFN+ +S+  +   
Sbjct: 184 DFPEAREFYKHPGIRFGKKTLRSANREFLLRVPGANGMKTGYICNSGFNVASSVTRRGRT 243

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTY 322
           ++A++MG  +  ER   A +L      K + + Q        S          +  K + 
Sbjct: 244 LIAIIMGASSGLERTAFARQLFDEGFRKGS-RGQNVKSLSGSSGNPPADGYCRRNKKLSS 302

Query: 323 SQFKK 327
            Q+  
Sbjct: 303 KQYMA 307


>gi|295696433|ref|YP_003589671.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM
           2912]
 gi|295412035|gb|ADG06527.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM
           2912]
          Length = 403

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 73/276 (26%), Positives = 139/276 (50%), Gaps = 18/276 (6%)

Query: 26  RNIQLMGKILFLS----IIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQ-DEPRYP 77
           R + ++  ++++       + + A +    P     S++++D+   Q+   K  DEP YP
Sbjct: 6   RWMTILALVIWVWSGSRGSVPARADQADGPPDLAVRSAVLMDMKTGQVLYAKNPDEPHYP 65

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK++T  +  E     +  LN +I  S+ A  Q+ +++YL E    + E+ +  ++ 
Sbjct: 66  ASITKILTAIVALE-----RGQLNDRITTSRLATLQDGNRIYLVEGEEHSLEELLYGMML 120

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND + A  E   GS   FA +M+  AK+IG  +T + N +GLHD N +TTA D  ++
Sbjct: 121 NSGNDAAVAIAEHYGGSVAGFAAMMNATAKEIGALHTHFTNPNGLHDPNHVTTAYDMCLI 180

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRII----TNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
           G    +N P + +  + + + +  +       N N++L       GIKTGYT  +   +V
Sbjct: 181 GRYAMQN-PIFRQIVATKTYPWHGKEWESELVNINRMLWTYPGATGIKTGYTDQAQQTMV 239

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
            S    ++ ++A +M +P  +   ++A +L+    +
Sbjct: 240 VSATRGNESLIATLMDIPGQEAMREEASKLLDWGFQ 275


>gi|291562424|emb|CBL41240.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
           SS3/4]
          Length = 450

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 86/283 (30%), Positives = 141/283 (49%), Gaps = 16/283 (5%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
             E+ A    S+I+++ +   +   K  DEPR PAS+TK+MTL +IF+ LQS K+ L  +
Sbjct: 84  GPEITAP---SAILMEASTGTVICEKNADEPRNPASVTKIMTLILIFDALQSGKIRLTDE 140

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           +  S  A +   S+++L+E    T E  I  ++  S ND S A  EFI G E  F  +M+
Sbjct: 141 VVTSAHAKSMGGSQVFLEEGEIQTVETLIKCIVIASGNDASVAMAEFIGGDEGTFVKMMN 200

Query: 164 NKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY--- 219
            +AK +GM++T + +  GL D    +TTARD A++   L   +PQ   Y +I        
Sbjct: 201 ERAKGLGMEHTKFIDCCGLTDSPEHVTTARDIALMSRELITKYPQITNYTTIWMENITHV 260

Query: 220 -----RNRIITNHNKLLNKMHN--IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
                +   ++N NKLL    N  + G+KTG T  + + +  + +     ++A +M  P 
Sbjct: 261 TKQGTKEFGLSNTNKLLKMATNFEVTGLKTGSTSIAKYCLSATAKKDGVELIAAIMAAPD 320

Query: 273 SQERDQKALELITSFLEKKTLKHQQTHRK-DNLSSTSLKKSLM 314
            + R + A+ L+        L   +T  +   LS T  K+  +
Sbjct: 321 FKARFKDAVTLLNYGFGNCRLYKDETPPELPKLSVTGGKEPEV 363


>gi|163738564|ref|ZP_02145978.1| Serine-type D-Ala-D-Ala carboxypeptidase [Phaeobacter gallaeciensis
           BS107]
 gi|161387892|gb|EDQ12247.1| D-alanyl-D-alanine carboxypeptidase [Phaeobacter gallaeciensis
           BS107]
          Length = 396

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 139/271 (51%), Gaps = 9/271 (3%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQS 95
           L + + ++++        ++ V+D   + +   K  +    PAS++K+MTLY+ FE ++ 
Sbjct: 20  LLVSLSALSAAAFDTRARAAYVLDQETDTVLLAKNADLALPPASMSKLMTLYVAFEAIRD 79

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS--G 153
            +L L+ ++PVS+ A +   S ++L  +     E  +  +I  S ND      E +S  G
Sbjct: 80  GRLTLDERLPVSEHAMSYKGSTMFLNTQDRVRVEDLLRGIIVLSGNDACVVLAEALSPDG 139

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           +E  FA  M+ +A+++GM+N+ + N++G        +  D AIL   L ++FPQYY  F+
Sbjct: 140 TEAGFARYMTKRAQEMGMENSTFANSNGWPAAGHRMSVEDLAILAEKLIEDFPQYYPLFA 199

Query: 214 IRKFRYRNR---IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
            R+F +  R    + N N LL      DG+KTG+T  +G+ +V S    D  ++ V+ G+
Sbjct: 200 EREFEFDGRAPSNVRNRNPLLGLGIGADGLKTGHTSEAGYGLVGSAAQGDRRVIFVITGL 259

Query: 271 PTSQERDQKALELITSFLE---KKTLKHQQT 298
            ++  R ++A  ++        KKT+     
Sbjct: 260 DSTTARAEEAEAIVNWSFRQFAKKTVAKAGV 290


>gi|330448017|ref|ZP_08311665.1| penicillin-binding 6 domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492208|dbj|GAA06162.1| penicillin-binding 6 domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 459

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/277 (27%), Positives = 131/277 (47%), Gaps = 14/277 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + I++D N  Q+           PAS TK+M +YI+ + L    + L++++ V + A 
Sbjct: 103 ARAFILMDANTGQIIASNDANMRMAPASTTKLMLMYIVEQKLADGVISLDSKVQVPEVAW 162

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S+++LK  +Y + ++ I  +I  S ND +     +++GS+  F  +M+  A K+GM
Sbjct: 163 RTGGSRMFLKPGSYVSVKELIQGVIVESGNDAAVTLANYVAGSQSSFVSMMNATAVKLGM 222

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
            NT +    GL      +TA D  +LG  +  ++PQY+ +FS + F Y +    N N+LL
Sbjct: 223 HNTHFTTVMGLPAPAHFSTAYDLGLLGQHIMNDYPQYFHFFSQKYFEYNHIRQPNFNRLL 282

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRY--KDDPIVAVVMGMPTSQERDQKALELIT---S 286
                  G+KTG T  +G+++V+S         +V VV+G  +  +   ++  L      
Sbjct: 283 FTYQYATGMKTGSTEAAGYSLVSSAEIPNNPMKLVGVVLGTQSLNDVAAQSKALFNYGFR 342

Query: 287 FLEKKTLKHQQ--------THRKDNLSSTSLKKSLMI 315
           F ++ TL               K N  S  L K L +
Sbjct: 343 FFKQDTLYAADSKLSEQNVWGGKQNTVSLGLDKPLTL 379


>gi|297617565|ref|YP_003702724.1| serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145402|gb|ADI02159.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 427

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 134/292 (45%), Gaps = 19/292 (6%)

Query: 3   QQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSI-IMISMASELHAKPKYSSIVIDV 61
           +   +        T P+G       + L+  +L L     +++ASE       S ++++ 
Sbjct: 12  ETVFRVEQPCKVRTIPFG-------VLLICLVLSLGFDPKLALASENPQVQAPSCVLMEA 64

Query: 62  NKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
              ++   K  D+   PASLTK++T  I  E     +  LN +I V         +++YL
Sbjct: 65  TTGKIVWAKNPDQRMAPASLTKVLTALIALE-----RGDLNDKIKVGPNPPRVEGTRVYL 119

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
            E    T E  + A++  S ND + A  E   GS++ FA LM+ KA  +G +N+ + + +
Sbjct: 120 VEGEEATLENLLYAMLLNSGNDAALAIAEHFGGSQQGFARLMNEKAAALGARNSHFVSPN 179

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR----IITNHNKLLNKMHN 236
           GL D N  TT+RD A++     +N P + K  + +   +  +     + N NKLL K   
Sbjct: 180 GLSDPNHYTTSRDLAVIARAALQN-PDFRKIVATKTRPWNGQDWQTTLINQNKLLWKYPG 238

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            DG+KTGYT  +   ++ S        +AVV+  P     +Q A+ L+    
Sbjct: 239 ADGVKTGYTTEARNTLIASATRNGQSFIAVVLDEPRGSVAEQDAIALLDYGF 290


>gi|307943474|ref|ZP_07658818.1| penicillin-binding protein [Roseibium sp. TrichSKD4]
 gi|307773104|gb|EFO32321.1| penicillin-binding protein [Roseibium sp. TrichSKD4]
          Length = 446

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 81/297 (27%), Positives = 149/297 (50%), Gaps = 7/297 (2%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYL 93
           LF   +     +E+ A      I+ID     +   +Q     YPASLTK+MT Y+  + +
Sbjct: 8   LFCFFLSSPTKAEIGAH-----ILIDAKSGDVLYERQSTRKWYPASLTKIMTAYVTLKAV 62

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           + +++ + + +  SK + ++ PSK+  K  T  T +  +  ++ +SANDV+ A GE +SG
Sbjct: 63  RDERITMTSPVVQSKNSISEPPSKMGFKVGTQLTVDAALKIIMIKSANDVAVALGEAVSG 122

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           SE  F   M+ +AK++GM+NT + N  GL D  Q++TARD A+L      +FP+  + + 
Sbjct: 123 SEAAFIAEMNREAKRLGMRNTRFVNPHGLPDNAQVSTARDMALLARAFWYDFPEARQIYK 182

Query: 214 IRKFRYRNRIITNHNK-LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
               ++  + + + N+  L ++   +G+KTGY  NSG+N+  ++  +   ++AVV+G  +
Sbjct: 183 YPGIKFGRKPLRSANRFFLQRVPGANGMKTGYICNSGYNVAATVTRRGRTLIAVVLGARS 242

Query: 273 SQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKID 329
             ER     EL+    +K+  +        +  +          K     +   + D
Sbjct: 243 GLERTALTRELMDKGFKKRGSRTNVASLTGSSGNPPADGYCRRNKKPGVEAMMARFD 299


>gi|163743049|ref|ZP_02150432.1| D-alanyl-D-alanine carboxypeptidase [Phaeobacter gallaeciensis
           2.10]
 gi|161383732|gb|EDQ08118.1| D-alanyl-D-alanine carboxypeptidase [Phaeobacter gallaeciensis
           2.10]
          Length = 396

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 139/271 (51%), Gaps = 9/271 (3%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQS 95
           L + + ++++        ++ V+D   + +   K  +    PAS++K+MTLY+ FE ++ 
Sbjct: 20  LLVSLSALSAAAFDTRARAAYVLDQETDTVLLAKNADLALPPASMSKLMTLYVAFEAIRD 79

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS--G 153
            +L L+ ++PVS+ A +   S ++L  +     E  +  +I  S ND      E +S  G
Sbjct: 80  GRLTLDERLPVSEHAMSYKGSTMFLNTQDRVRVEDLLRGIIVLSGNDACVVLAEALSPDG 139

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           +E  FA  M+ +A+++GM+N+ + N++G        +  D AIL   L ++FPQYY  F+
Sbjct: 140 TEAGFARYMTKRAQEMGMENSTFANSNGWPAAGHRMSVEDLAILAEKLIEDFPQYYPLFA 199

Query: 214 IRKFRYRNR---IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
            R+F +  R    + N N LL      DG+KTG+T  +G+ +V S    D  ++ V+ G+
Sbjct: 200 EREFEFDGRAPSNVRNRNPLLGLGIGADGLKTGHTSEAGYGLVGSAAQGDRRVIFVITGL 259

Query: 271 PTSQERDQKALELITSFLE---KKTLKHQQT 298
            ++  R ++A  ++        KKT+     
Sbjct: 260 DSTTARAEEAEAIVNWSFRQFAKKTVAKAGV 290


>gi|51892723|ref|YP_075414.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51856412|dbj|BAD40570.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 401

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 136/292 (46%), Gaps = 30/292 (10%)

Query: 23  YIQRNIQ-LMGKILFLSIIMISMASE---------LHAKP---KYSSIVIDVNKNQMTGF 69
            ++R I  ++  +L +S    + A           + + P    + +I++D     +   
Sbjct: 3   CVRRAIAGMIAALLLISGAEAAAAPRPLVDHYRDVVESPPSLWAHGAILMDAATGDVLWE 62

Query: 70  KQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           +    R +PAS TK++T  I  E     +  L+ ++ VSK AA    S +YL+E    T 
Sbjct: 63  RNAHVRLHPASTTKVLTALIALE-----RGDLDARVTVSKRAAQTPGSSMYLREGEVHTL 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
              +  L+  S ND + A  E I+GS + FA LM+ +A+++G +N+ + N  GL     +
Sbjct: 118 HDLVHGLLMLSGNDAAVAIAEHIAGSVEAFADLMNERAERLGARNSHFVNPHGLTHPEHL 177

Query: 189 TTARDQAILGILLRKNFPQYYKYFS--IRKFRY----RNRIITNHNKLL-NKMHNIDGIK 241
           +TA D A++     +N P + +  +   ++  Y    R  ++ N N+LL   +   DG+K
Sbjct: 178 STAYDLAVITRAALQN-PLFAEIVAAPQKELTYEELGRKVVLYNTNRLLRGGLPGADGVK 236

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
           TG T  +G  ++ S    D  ++AVV+       R +++  L+        L
Sbjct: 237 TGTTGAAGPCLIASATRDDQKLIAVVLNASN---RWRESAALLEWGFRNFAL 285


>gi|269138268|ref|YP_003294968.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda EIB202]
 gi|267983928|gb|ACY83757.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda EIB202]
 gi|304558304|gb|ADM40968.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda FL6-60]
          Length = 387

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 123/244 (50%), Gaps = 9/244 (3%)

Query: 53  KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S +++D    Q+      D  R PASLTK+MT Y++ + L   ++ LN ++ +   A 
Sbjct: 33  AASWVLMDAQTGQILAAGNPDARRNPASLTKLMTNYVVEQALDQGRIGLNDRVSIGDDAW 92

Query: 112 T------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
                  +  S ++LK     T    I  +I  S ND   A  +++SG +  F   M+  
Sbjct: 93  ATRNPLFKGSSLMFLKPGDRATVSDLIRGIIIDSGNDACVALSDYVSGDQADFVRQMNAD 152

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
              + +QNT ++   GL    Q ++ARD A+L   +  +   YY +++ +   +      
Sbjct: 153 VSALHLQNTHFETVHGLDAPGQYSSARDLALLARAIITHEQPYYHFYAEKSLSWNGVTQN 212

Query: 226 NHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY-KDDPIVAVVMGMPTSQERDQKALEL 283
           N N LL  +  ++DG+KTG+T ++GFN+V +    +   ++AVVMG  +S+ R+Q+A +L
Sbjct: 213 NRNGLLWDQDLHVDGMKTGHTASAGFNLVATSVDARGQRLIAVVMGADSSRGREQQAKKL 272

Query: 284 ITSF 287
           +   
Sbjct: 273 LLWG 276


>gi|83943052|ref|ZP_00955512.1| D-alanyl-D-alanine carboxypeptidase [Sulfitobacter sp. EE-36]
 gi|83954241|ref|ZP_00962961.1| D-alanyl-D-alanine carboxypeptidase [Sulfitobacter sp. NAS-14.1]
 gi|83841278|gb|EAP80448.1| D-alanyl-D-alanine carboxypeptidase [Sulfitobacter sp. NAS-14.1]
 gi|83846060|gb|EAP83937.1| D-alanyl-D-alanine carboxypeptidase [Sulfitobacter sp. EE-36]
          Length = 389

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/266 (29%), Positives = 139/266 (52%), Gaps = 10/266 (3%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQS 95
           ++ +++++ ++       ++ V+D     +   K  DEP  PAS++K+MTLY+ FE ++ 
Sbjct: 9   IATLLLALPAQAFETQARAAYVVDQTTGTVLLTKNADEPLPPASMSKLMTLYMAFEAIER 68

Query: 96  KK----LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            K    L L  ++PVS+ A +   S ++L        E  +  +I  S ND      E +
Sbjct: 69  GKSNGGLDLTEELPVSQHAMSYGGSTMFLDTTDRVKVEDLLRGIIVLSGNDACAVIAEAL 128

Query: 152 S--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
           S  GSE  FA LM+ +A+++GM N+ + N++G        + RD  +L   L +++PQYY
Sbjct: 129 SPDGSEAGFARLMTQRAQQMGMTNSTFANSNGWPAAGHRMSLRDLGLLATRLIEDYPQYY 188

Query: 210 KYFSIRKFRYRNRII---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
             FS R+F +  R     TN N LL      DG+KTG+T  +G+ +V S +  D  +V V
Sbjct: 189 PMFSQREFLFDGRAPQNKTNRNPLLGLGIGADGLKTGHTEEAGYGLVGSAKQGDRRVVFV 248

Query: 267 VMGMPTSQERDQKALELITSFLEKKT 292
           + G+ ++  R Q++  ++     + +
Sbjct: 249 LSGLESAAARAQESESIVNWAFRQFS 274


>gi|283850365|ref|ZP_06367654.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp.
           FW1012B]
 gi|283574391|gb|EFC22362.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp.
           FW1012B]
          Length = 365

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/266 (27%), Positives = 136/266 (51%), Gaps = 2/266 (0%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTK 82
           ++R I L+  +  +       A +    P  +++V +    ++   +  + R  PAS+TK
Sbjct: 1   MRRVIFLLMILCLVGPKTAFSARQSGKLPVKAAMVAEYGSGRVLFTQDPDKRIAPASVTK 60

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT+Y++F+ L + +  L+ ++ VS+ A     S + L+     T ++ +  +   S ND
Sbjct: 61  VMTMYLVFDALAAGRASLSDKVKVSRRADATGGSTMNLRAGEVVTLDELMRGMAVASGND 120

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E   G    +  +M+ KA+++GM +T +K  +GL    Q+TTARD   L     
Sbjct: 121 AAVAIAEHFGG-VPHWVGMMNEKARELGMTSTTFKTPNGLPAPGQLTTARDLMKLATSYL 179

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           + +PQ  +Y S  +  +   +  N N+LL     +DGIKTGY  +SG+NI+ + +  D  
Sbjct: 180 RRYPQALRYHSTTEINHCGAVHGNTNRLLGVCEGVDGIKTGYVGSSGYNIIATAKRGDTR 239

Query: 263 IVAVVMGMPTSQERDQKALELITSFL 288
           I+AVV+G  T Q R+     ++ +  
Sbjct: 240 IIAVVLGGRTKQARNNATTRILDASF 265


>gi|251794126|ref|YP_003008857.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. JDR-2]
 gi|247541752|gb|ACS98770.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. JDR-2]
          Length = 428

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 91/302 (30%), Positives = 153/302 (50%), Gaps = 22/302 (7%)

Query: 55  SSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S+I+ID +  Q+      DEPR PAS+TKMMT YI+ E ++SK L+ +  I VS+ AA  
Sbjct: 50  SAILIDADTGQVVYEVNADEPRPPASMTKMMTEYIVLEQIKSKALNWDEMITVSEEAANT 109

Query: 113 -QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            ++ S++YL +   +  +   +A+   SAND + A    I GSE+ F   M+  A+K+G+
Sbjct: 110 PKDGSQVYLAQGEQYKVKDLYMAMAVGSANDATIALASAIGGSEQGFVEKMNETAQKLGL 169

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR---IITNHN 228
            +  Y +A+GL D   + +A+DQA L  ++ KN P++ +Y S  ++++R R    I N N
Sbjct: 170 TSAHYTSATGLAD-TTVISAKDQAKLAQIIIKNDPEFLEYASTTEYKFRPRDDKPIVNIN 228

Query: 229 KLLNK-----------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
            +L                +DG+KTGY   +G+    +++  D   ++VVM   + + R 
Sbjct: 229 WMLASNKSNTYLKAFAYDGVDGMKTGYISAAGYTFTGTVKRGDQRYISVVMNTKSKEARF 288

Query: 278 QKALELITSFL---EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
            +  +L        EKKT+   ++   +   S  +KK +       T S    I  K   
Sbjct: 289 NETAKLYNYAFNSLEKKTVIPAKSV-VEKAESVKIKKGVKKSVPIITESDISLIVKKGAD 347

Query: 335 TQ 336
            +
Sbjct: 348 PK 349


>gi|58584548|ref|YP_198121.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|58418864|gb|AAW70879.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
          Length = 370

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 157/306 (51%), Gaps = 14/306 (4%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLY 87
           +L+  +L  ++   S + +   K K  ++V+D+  +        DE   P+S++K+MTLY
Sbjct: 6   KLVILLLVSTLPFSSYSYQFRTKAKQ-AVVLDLASDLFIFEHNSDEKMSPSSMSKLMTLY 64

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + F+YL++  + +  +  VS+ A  +  S ++LKE    + ++ +  + T S ND     
Sbjct: 65  VAFDYLKAGIIDMKDKFRVSRKAWERKGSSMFLKEGQSVSVKELLEGVTTVSGNDACITL 124

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E I+GSE+ F + M+  A+ + + ++ + N+SG  DK+   +A+D  +L   +  +FP+
Sbjct: 125 AEGIAGSEENFVVEMNEVAQNLNLSDSYFVNSSGWPDKDHFMSAKDLVVLAKRIFTDFPE 184

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           YY  FS +   Y + I  N N LL     +DG+KTGYT   G+ IV S +  D  I AVV
Sbjct: 185 YYDLFSKQYLTYNDIIQKNKNLLLFHDIGVDGLKTGYTNAGGYGIVISAKRNDRRIFAVV 244

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
            G+ T +ER ++A  LI           ++   KD+          +++++   Y + +K
Sbjct: 245 NGLNTEKERIEEAKRLIQYSFNH--FNTKKIFAKDS----------VVEEINVLYGKERK 292

Query: 328 IDAKAH 333
           + A   
Sbjct: 293 VSATVA 298


>gi|328543015|ref|YP_004303124.1| D-alanyl-D-alanine carboxypeptidase superfamily [polymorphum gilvum
           SL003B-26A1]
 gi|326412761|gb|ADZ69824.1| D-alanyl-D-alanine carboxypeptidase superfamily [Polymorphum gilvum
           SL003B-26A1]
          Length = 314

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 103/252 (40%), Positives = 146/252 (57%), Gaps = 4/252 (1%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKN-QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSK 96
           S+ ++  ++E      ++++VID     ++     D PRYPASLTKMMTLY++FE ++  
Sbjct: 66  SVALVPASAEAR---GHAALVIDAASGAELFAANADAPRYPASLTKMMTLYLLFEAVERG 122

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           +L L+T + VS  AA + P+K+ L   +  T  +   AL  RSANDV+ A  E ++GSE 
Sbjct: 123 ELTLDTPLAVSARAAARPPAKIGLATGSTITVREAAQALAVRSANDVAVAIAERLAGSES 182

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            FA  M+ KA+ +GM  T + NASGL D  Q+TTARD AILG  L+  FPQY  YF    
Sbjct: 183 AFAAQMTAKARSLGMSRTRFVNASGLADTRQVTTARDMAILGRALKARFPQYAAYFRATS 242

Query: 217 FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           F Y  R     NKLL ++  +DG+KTGY   SG+N+V +        V VVMG  +   R
Sbjct: 243 FAYNGRTFEATNKLLGRVPGVDGLKTGYIGLSGYNLVATGSRGGRGFVVVVMGGKSESAR 302

Query: 277 DQKALELITSFL 288
           D +   LI ++ 
Sbjct: 303 DAEVTRLIETYF 314


>gi|323705335|ref|ZP_08116910.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535237|gb|EGB25013.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 381

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 89/324 (27%), Positives = 146/324 (45%), Gaps = 26/324 (8%)

Query: 31  MGKILFLSIIMISMASELHAKP---------KYSSIVIDVNKNQMTGFKQ-DEPRYPASL 80
           M KIL L +I   + +  + +            ++IV+D    ++   K   E    AS 
Sbjct: 1   MKKILVLVLIFTFLMTPTNIEAENLKPPQIAAKAAIVMDQKSGRILFEKNISEKLPMAST 60

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           TK+MTL +  EY      +LN  + VSK AA+   S ++L      +    +  L+  S 
Sbjct: 61  TKIMTLLLALEYG-----NLNDIVTVSKKAASVGGSSIWLSPGEKISMINLLYGLMLNSG 115

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILG 198
           ND +TA  E ISGS  KF  LM+ KAK+IG  NT +   SGL     N  TTA D A++ 
Sbjct: 116 NDAATAIAEHISGSVDKFVELMNKKAKEIGAYNTNFVTPSGLDIGIDNHYTTAYDLALIT 175

Query: 199 ILLRKNFPQYYKYFSIRKFRYR------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
                N+ ++ +  S ++          +R + N NK+L +    DG+KTG+T  +G  +
Sbjct: 176 RYAFNNYNKFAEIVSTKEKTIPWDGKEYDRYLRNKNKMLWQYEGADGVKTGFTNKAGRCL 235

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALEL-ITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
           V S       +++VV+      E  QK L+    ++   K +   Q  +  ++ S   K 
Sbjct: 236 VASASRNGQRLISVVLNSGPMWEDTQKILDYSFANYTPIKIISKGQMIKTISVVSGKEKY 295

Query: 312 SLMIKKLKR--TYSQFKKIDAKAH 333
             ++         S+ ++I+ K  
Sbjct: 296 LPLVYNSDFILPISKDEEINVKID 319


>gi|306843463|ref|ZP_07476064.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO1]
 gi|306276154|gb|EFM57854.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO1]
          Length = 370

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 94/312 (30%), Positives = 165/312 (52%), Gaps = 19/312 (6%)

Query: 33  KILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYII 89
           +I F ++    +A S   A P   SI +DV   ++   +QD  +  YPASLTKMMT Y+ 
Sbjct: 6   RIWFAAVAFSGIALSGAAANP---SIAVDVATGKV-YEQQDAFQRWYPASLTKMMTAYVT 61

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           F  LQS ++ L + + ++  A+ + PSK+  K  +  T +  +  ++ +SANDVS A  E
Sbjct: 62  FRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVAE 121

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            + G+E  F   M+ +A+++GM  + + N +GLHD N  TTARD A+L + LR+ FPQY 
Sbjct: 122 AVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRREFPQYA 181

Query: 210 KYFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            YF+          ++  N+N LL +    DG+KTG+   SGFN+  S       ++A+V
Sbjct: 182 HYFATEAIDPGAGKKVQANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRTVLAIV 241

Query: 268 MGMPTSQERDQKALELITSFLEKK--------TLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
           +G    + R  +A +++T     +        TL+  +T   +   +  ++K++  ++  
Sbjct: 242 LGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAETANLNQ--AVDMRKAICSEQAM 299

Query: 320 RTYSQFKKIDAK 331
                 ++++ +
Sbjct: 300 ADRWDGREVEGR 311


>gi|182416858|ref|ZP_02948244.1| D-alanyl-D-alanine carboxypeptidase [Clostridium butyricum 5521]
 gi|237669065|ref|ZP_04529049.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182379320|gb|EDT76819.1| D-alanyl-D-alanine carboxypeptidase [Clostridium butyricum 5521]
 gi|237657413|gb|EEP54969.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 461

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/245 (28%), Positives = 124/245 (50%), Gaps = 7/245 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+++++    ++   K  DE   PAS+TK+MT+ +  E + S K+ L+ ++  S+ A 
Sbjct: 103 ARSALLMEPCTGKIIYEKNADEKFAPASVTKIMTMLLTIEAVDSGKIALDDKVTCSENAK 162

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S + L      T E+ +  +   S ND + A  E++ G+E  F  +M+ +A+++GM
Sbjct: 163 KMGGSTMLLDTGEIRTVEELLKGVAIASGNDAAVALAEYLGGTENDFVGMMNKRAEELGM 222

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITN 226
            NT +KN +GL     ++TA D A +   L K  P   KY      +I + R     + N
Sbjct: 223 TNTTFKNCNGLPADGHLSTANDIAKMSKELLK-HPTILKYTGTYMDTITEGRKSPIELVN 281

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           HNKL+      DG+KTG+T  + + I  +       +++V+MG PT + R++ A  L+  
Sbjct: 282 HNKLVRFFDGCDGLKTGFTNEAKYCISATATRNGVRMLSVIMGAPTYKIRNRDASILLNY 341

Query: 287 FLEKK 291
              K 
Sbjct: 342 GFSKY 346


>gi|298368809|ref|ZP_06980127.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria sp. oral taxon
           014 str. F0314]
 gi|298282812|gb|EFI24299.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria sp. oral taxon
           014 str. F0314]
          Length = 450

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/264 (28%), Positives = 133/264 (50%), Gaps = 17/264 (6%)

Query: 43  SMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           S A    A P+ ++   IV D+  NQ+      D    PASLTKMMT Y+ F+ L+   L
Sbjct: 75  SGALSPAAVPQIAATAFIVKDLQSNQVLAANNPDNLIEPASLTKMMTAYLTFKALEDGTL 134

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG----- 153
             +  + VS        S+++L      +    +  +I +S ND +    E I G     
Sbjct: 135 KADEMLTVSDAGWHTEGSRMFLNPHVPVSVSDLLKGMIVQSGNDAAITLAEAIGGIGNDS 194

Query: 154 --------SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
                     + F  +M+ +AK++GM +T + N +GL  +  ++T  D A+L   L +++
Sbjct: 195 EQTETPKPPLENFVAMMNMEAKRLGMNHTRFNNPTGLASERHLSTVSDLALLAAALIRDY 254

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           P+YY  FS++ FRY      N N LL +  ++DG+KTG+T ++G+N+  S       I+ 
Sbjct: 255 PKYYPIFSLKSFRYNGIEQPNRNLLLFRDSSVDGLKTGHTESAGYNLAASSNRNGRRIIT 314

Query: 266 VVMGMPTSQERDQKALELITSFLE 289
           +V+G  +++ R  ++ +L+   L+
Sbjct: 315 IVVGAESTEARASESGKLLNWALQ 338


>gi|307945901|ref|ZP_07661237.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseibium sp. TrichSKD4]
 gi|307771774|gb|EFO30999.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseibium sp. TrichSKD4]
          Length = 301

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 103/234 (44%), Positives = 141/234 (60%), Gaps = 1/234 (0%)

Query: 55  SSIVIDVNKN-QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S +V++     ++     D PR+PASLTKMMTLY++FE +   +  L+T + VS  AA+Q
Sbjct: 66  SVLVLNGYTGRELLSENADAPRFPASLTKMMTLYLLFEEVSKGRYTLSTPLNVSANAASQ 125

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
            PSK+ LK  +  T EQ   AL  +SANDV+ A  E ISGSE  FA  M+ KAK +G+  
Sbjct: 126 PPSKIGLKPGSTITVEQAARALAIKSANDVAIAVAENISGSEAAFARKMTQKAKSLGLTR 185

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           T + NASGL +  Q+TTARD A LG+ L++ FPQY  Y+  R   Y  R     N L+ K
Sbjct: 186 TRFVNASGLPNPRQVTTARDMAKLGMALKRRFPQYASYYKARSVTYNGRRFKATNNLIGK 245

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           +  +DG+KTGY R SG+N+V + R     +V VVMG  +   RD +  +LI  F
Sbjct: 246 VAGVDGLKTGYVRLSGYNLVATSRRNGRKLVVVVMGGASESARDTEVTQLIERF 299


>gi|225390069|ref|ZP_03759793.1| hypothetical protein CLOSTASPAR_03819 [Clostridium asparagiforme
           DSM 15981]
 gi|225043871|gb|EEG54117.1| hypothetical protein CLOSTASPAR_03819 [Clostridium asparagiforme
           DSM 15981]
          Length = 382

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 130/255 (50%), Gaps = 12/255 (4%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+++++ +  Q+   K  D+ R PAS+TK+MTL +IF+ L+S K+ +  ++  S  A + 
Sbjct: 18  SALLMEASTGQVIYEKDADQKRSPASITKIMTLILIFDALESGKIKMTDEVVTSAYAKSM 77

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+E    T E  I  +I  S ND S    E+I G+E++F  +M+ +A  +GM N
Sbjct: 78  GGSQVFLEEGEKQTVETLIKCIIIASGNDASVTMAEYIGGTEQEFVRMMNERAAGLGMTN 137

Query: 174 TIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY--------RNRII 224
           T + +  GL D  + +TTARD AI+   L   +PQ + Y +I             +   +
Sbjct: 138 THFVDCCGLTDSPDHVTTARDIAIMSRELINRYPQIHNYSTIWMENITHVTKQGTKEFGL 197

Query: 225 TNHNKLLNKMHN--IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           +N NKLL    N  + G+KTG T  + + +  +       ++AVVM  P  + R   A  
Sbjct: 198 SNTNKLLKMATNFTVTGLKTGSTSLAKYCLSATAEKDGVRLIAVVMAAPDFKARFADAQT 257

Query: 283 LITSFLEKKTLKHQQ 297
           ++        L   +
Sbjct: 258 MLNYGYANCRLYEDK 272


>gi|222147779|ref|YP_002548736.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein)
           [Agrobacterium vitis S4]
 gi|221734767|gb|ACM35730.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein)
           [Agrobacterium vitis S4]
          Length = 442

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 107/309 (34%), Positives = 175/309 (56%), Gaps = 7/309 (2%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLY 87
            L+   LF+SI M  MAS + A    + +++D    ++   +  D P +PASLTKMMT+Y
Sbjct: 4   TLIALSLFVSISM--MASPVLA--GSAQLLLDARTGRVIASENADMPNHPASLTKMMTIY 59

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           ++F+ ++   L  ++ +P SK A+++ P+KL LK     T  + +L ++T SAND + A 
Sbjct: 60  MVFDAIRRGTLSWDSPVPFSKYASSRPPTKLRLKPGEEITVREAVLGMVTLSANDAAAAM 119

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E + G+E+ FA +M+ KA+++GM NT + NASGL D  QITTARD + LG+ L ++FP+
Sbjct: 120 AEKLGGTEENFAAMMTAKARQLGMPNTTFVNASGLPDDRQITTARDMSTLGVALLRDFPR 179

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            Y  FS R F +R R I  HN L+ +   +DGIKTGYT  SG+N+V+++      ++ V+
Sbjct: 180 DYALFSTRSFAFRGRTINGHNNLMYRYKGMDGIKTGYTNASGYNLVSAVADGKRRVIGVI 239

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
           MG  +   RD    +LIT  + K +     +       +  +  +     +     +   
Sbjct: 240 MGGRSGASRDNLMAQLITKNIGKAS--DGNSLIASAAPTAPIVIAQTTGSIPLPLDRSAP 297

Query: 328 IDAKAHSTQ 336
           ID +  ++Q
Sbjct: 298 IDRREVASQ 306


>gi|222085114|ref|YP_002543644.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium
           radiobacter K84]
 gi|221722562|gb|ACM25718.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium
           radiobacter K84]
          Length = 429

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 104/307 (33%), Positives = 171/307 (55%), Gaps = 5/307 (1%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYI 88
           +   ++ LS  ++ + + + +    +  ++D     +      D+  +PASLTKMMTLY+
Sbjct: 1   MKKFLMALSAAVVLLGAPVASFAGSAYFIMDAKTGAVLASSNADDLNHPASLTKMMTLYM 60

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            FE +   KL  N++IPVS  AA + P+KL LK     T  + +  +I +SAND + A  
Sbjct: 61  TFEAINRGKLSWNSKIPVSSNAAGKPPTKLGLKPGGTVTVREAVDGMIIKSANDAAAAMA 120

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E + GSE  FA LM+ KA++IGM+ T++ NASGL +  Q+TTARD + L + L  N+PQ 
Sbjct: 121 EALGGSESGFARLMTQKAREIGMRRTVFMNASGLPNMQQVTTARDMSTLAVALINNYPQE 180

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           Y+ FS   F YR + +  HN L+ +   +DGIKTGYT  SGFN+V+++R+ +  ++ VVM
Sbjct: 181 YRLFSQTGFTYRGQRVRGHNNLMYRYEGMDGIKTGYTNASGFNLVSAVRHGNRRVIGVVM 240

Query: 269 GMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           G  T++ RD     L+  ++     K   +     ++S    K   ++    +     ++
Sbjct: 241 GGATARGRDALMASLLDRYVP----KAASSSTSRLVASIGGGKVKQVEVASASNDVAMEV 296

Query: 329 DAKAHST 335
           D +  +T
Sbjct: 297 DTQTTAT 303


>gi|260881606|ref|ZP_05404816.2| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM
           20544]
 gi|260848369|gb|EEX68376.1| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM
           20544]
          Length = 399

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 85/326 (26%), Positives = 148/326 (45%), Gaps = 26/326 (7%)

Query: 21  SIYIQRNIQLMGKI--------LFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF 69
           S+ I R I+ +G++        + LS+  ++      A+P     ++I+ID +  ++   
Sbjct: 7   SLGILRYIRKLGRMGVGTMLLAVCLSLSSMTSVRAATAEPDIQAEAAILIDADTGRVLWS 66

Query: 70  KQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           K  E R YPAS+TKMMT  +  +      L  + +I +S+ AA+     L++      T+
Sbjct: 67  KNGEERHYPASMTKMMTCLLGIQL-----LPPDAKITISQAAASTEDLPLHIARGDVLTS 121

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           E+ +  ++  S N  + A  E I GS   FA  M+ KA+++GM NT + N +GL D N  
Sbjct: 122 EELMRGMMMVSDNGAAVAIAEHIDGSAAVFAERMNEKAQELGMVNTHFANPNGLTDPNHY 181

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NRII--TNHNKLLNKMHNIDGIK 241
           +T  D A L     KN P +  +   ++ R        + +   N N+LL     I GIK
Sbjct: 182 STPHDMARLAQYAMKN-PVFRDFVRQKERRVTWIAPAGKTLLAENTNELLGHYEGITGIK 240

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRK 301
           TG+T  +G  +  S   +   ++AV+M  P+   R  +   ++       TL    T  K
Sbjct: 241 TGWTSAAGGCLAASAERQGVHLIAVLMKAPSEDARFPEMRAILDYGFANVTLAKGPT-AK 299

Query: 302 DNLSSTSLKKSLMIKKLKRTYSQFKK 327
           +      +K     + + R  +  + 
Sbjct: 300 EASRHVWVKGGTQARTVVRPATDIEY 325


>gi|222475494|ref|YP_002563911.1| Serine-type D-Ala-D-Ala carboxypeptidase (dacA) [Anaplasma
           marginale str. Florida]
 gi|222419632|gb|ACM49655.1| Serine-type D-Ala-D-Ala carboxypeptidase (dacA) [Anaplasma
           marginale str. Florida]
          Length = 380

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 70/272 (25%), Positives = 135/272 (49%), Gaps = 13/272 (4%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYS---------SIVIDVNKNQMTGFKQ-DEPRYPA 78
           + +   L  +   +++A    A+P Y+         +IV ++    +      D    P+
Sbjct: 4   RFLLSFLVPAFCCLALAP---ARPSYALKMHTKAPHAIVYELGSRTVLFEHDADVAVAPS 60

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           S++K+MTLY++F++L +  + ++    VS++A  +  S  +LK          I+     
Sbjct: 61  SMSKLMTLYLVFQHLHAGLIKMDDTFSVSESAWKRGGSSAFLKVGQMVKVRDLIMGAAVS 120

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND   A  E +SGS+++F   +++ AK++ + ++ + N +G  D+  + + RD   L 
Sbjct: 121 SGNDACIALAEGVSGSQEQFVEDINSLAKEMNLAHSSFTNVTGWPDEGHLMSVRDILTLS 180

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
           + + ++FP+YY  F  ++F Y      N+N LLN    +DGIKTG+T  +G+ I  S + 
Sbjct: 181 VRIFEDFPEYYHVFGEKQFTYNGVTQKNYNTLLNYNIGVDGIKTGHTEKAGYGIAASAQK 240

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            +  +  VV G+ T  ER  +   L+     +
Sbjct: 241 DNRRVFVVVNGLKTETERAYETKRLLLYAFNR 272


>gi|226309602|ref|YP_002769496.1| D-alanyl-D-alanine carboxypeptidase precursor [Brevibacillus brevis
           NBRC 100599]
 gi|226092550|dbj|BAH40992.1| D-alanyl-D-alanine carboxypeptidase precursor [Brevibacillus brevis
           NBRC 100599]
          Length = 438

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 82/310 (26%), Positives = 139/310 (44%), Gaps = 36/310 (11%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASELHAKP----------KYSSIVIDVNKNQMTGFKQD 72
           + +R   L   +   +  M  M S++ A P            S+I+++ +  ++   K  
Sbjct: 6   WTKRLTGLFLSVAVFATAMGGMVSKVEAAPVASQANLQLEAKSAILVEASTGKVLYSKDP 65

Query: 73  EP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           +    PAS++KMMT Y++ + ++ KK+  +  +PVS+ A       + S +YL     FT
Sbjct: 66  DVALPPASMSKMMTEYLVHDAIKQKKMKWDDVVPVSEYAFYIAKISDSSGVYLNLGESFT 125

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD--- 184
            +Q   A+   SAND +    E I+GSE  F  LM+ KA ++GM+NT +  ++GL     
Sbjct: 126 VKQLYEAMAIVSANDATVLLAEHIAGSEAAFVELMNKKAAELGMKNTSFVTSTGLPADEL 185

Query: 185 ---------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT-----NHNKL 230
                    K  + +ARD AIL   L  +FP   +      F +R          N+N +
Sbjct: 186 GPYSVQTDQKENLMSARDSAILARALIHDFPDALETSKKPIFTFRTGTPNEWTKKNYNWM 245

Query: 231 LNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L         +DG+KTG+T  +GF    +    +  +++VVM   T  +R  +  +L   
Sbjct: 246 LPSLISYYPGVDGLKTGHTDAAGFCFTGTAVRDNMRLISVVMKASTESKRFAETRKLFDY 305

Query: 287 FLEKKTLKHQ 296
                 L  Q
Sbjct: 306 GFGNFKLTKQ 315


>gi|269958469|ref|YP_003328256.1| D-alanyl-D-alanine carboxypeptidase [Anaplasma centrale str.
           Israel]
 gi|269848298|gb|ACZ48942.1| D-alanyl-D-alanine carboxypeptidase [Anaplasma centrale str.
           Israel]
          Length = 380

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 70/272 (25%), Positives = 134/272 (49%), Gaps = 13/272 (4%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYS---------SIVIDVNKNQMTGFKQ-DEPRYPA 78
           + +   L  +   +++A    A+P Y+         +IV ++    +      D    P+
Sbjct: 4   RFLLSFLVPAFCCLALAP---ARPSYALKMHTKAPHAIVYELGSRTVLFEHDADVAVAPS 60

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           S++K+MTLY++F++L +  + ++    VS++A  +  S  +LK          I+     
Sbjct: 61  SMSKLMTLYLVFQHLHAGLIKMDDTFSVSESAWKRGGSSAFLKVGQMVKVRDLIMGAAVS 120

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND   A  E +SGS+++F   ++  AK++ + ++ + N +G  D+  + + RD   L 
Sbjct: 121 SGNDACIALAEGVSGSQEQFVEDINGLAKEMNLAHSSFTNVTGWPDEGHLMSVRDILTLS 180

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
           + + ++FP+YY  F  ++F Y      N+N LLN    +DGIKTG+T  +G+ I  S + 
Sbjct: 181 VRIFEDFPEYYHVFGEKQFTYNGVTQKNYNTLLNYNIGVDGIKTGHTEKAGYGIAASAQK 240

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            +  +  VV G+ T  ER  +   L+     +
Sbjct: 241 DNRRVFVVVNGLKTETERAYETKRLLLYAFNR 272


>gi|86749795|ref|YP_486291.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris HaA2]
 gi|86572823|gb|ABD07380.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris HaA2]
          Length = 419

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 119/244 (48%), Gaps = 6/244 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I+ID     +   K  DE R P+S+ K+MT+ ++F  L   ++    +  +S+ A 
Sbjct: 59  APSAILIDGESGSVLFEKNADELRAPSSMLKLMTVELVFHLLAKGEIKPTDEYKISEYAW 118

Query: 112 TQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
            +       S ++ +  +    E  +   I +S ND   A  E I+GSE  F   M+ +A
Sbjct: 119 RRGGAPAGNSTMFAEIHSKVAVEDLLKGAIIQSGNDSCIALAEGIAGSEPAFVERMTKRA 178

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
           ++IG+  + + N++GL D     + R+   L   + + +P  YK FS ++F +     TN
Sbjct: 179 REIGLTQSTFANSNGLPDPGNKMSVRELGRLARHIIQTYPNDYKLFSEKEFTWNKIRQTN 238

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            N LLN  +  DG+KTGYT++ G+ +V S       ++ VV G+    +R  +  +L+  
Sbjct: 239 RNPLLNTFNGADGLKTGYTKDGGYGMVGSAVQNGMRLIVVVNGIDDIDDRASEVKKLLEW 298

Query: 287 FLEK 290
               
Sbjct: 299 GFRN 302


>gi|302389707|ref|YP_003825528.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter
           oceani DSM 16646]
 gi|302200335|gb|ADL07905.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter
           oceani DSM 16646]
          Length = 377

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 82/298 (27%), Positives = 136/298 (45%), Gaps = 18/298 (6%)

Query: 29  QLMGKILFLSIIMISMASELHAK---PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMM 84
            ++  ILF S   IS +            + +++D    ++   K  E R P AS TK+M
Sbjct: 9   TMVFVILFTSGFFISGSEAKELNLSLNARAYVLMDPVSGRILVEKNSEIRLPMASTTKIM 68

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T  +  E     K  LN+ + VS+ AA+   S  +L+     + E  +  L+  S ND +
Sbjct: 69  TAIVALE-----KGDLNSTVTVSRKAASVRGSSFHLEPGETMSLESMLYGLLLPSGNDAA 123

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  E I G  K F  LM+ KA++IG  NT +KN  GL +    TTA+D A++      N
Sbjct: 124 VAIAEHIGGDVKTFVELMNLKAREIGAFNTHFKNPHGLDEPGHFTTAKDLALITRYAL-N 182

Query: 205 FPQYYKYFSIRKFRY----RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
            P++ +    +        R R I N N+LL     IDG+KTGYT  +G  +V +     
Sbjct: 183 IPKFREIVRTKDIIITEGRRPRHIYNTNRLLRVSEEIDGVKTGYTGKAGRCLVATAERNG 242

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKL 318
             +++VV+      +     L+L+        L ++   + +  ++  LK  ++ K +
Sbjct: 243 MRLISVVLDA---HDHFSNTLKLLNYGFSTYRL-NKLVQKNNIYAAVPLKGGIINKAV 296


>gi|303327144|ref|ZP_07357586.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp.
           3_1_syn3]
 gi|302863132|gb|EFL86064.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp.
           3_1_syn3]
          Length = 256

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 128/238 (53%), Gaps = 1/238 (0%)

Query: 52  PKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  S+I++++N  ++   +  D    PASLTK+M++++  + +++ ++ LN ++ VS+ A
Sbjct: 2   PVRSAILVNLNTGRVLYEQSADTAIPPASLTKLMSMFLTLDAVKAGRISLNRKVKVSRQA 61

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A    S ++L+        + +  +   S ND +    + + G+ + F   M+ KA+ +G
Sbjct: 62  AATGGSSMHLRAGERVPLVRLLTGMAVASGNDAAMTVAQHVHGNSRTFVRQMNRKARALG 121

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+ T++KN +GL    Q TTARD   L     K  P   ++   R F +R R + N N L
Sbjct: 122 MRRTLFKNPTGLPAAGQKTTARDMMTLSRAYLKAHPDAMRFHGTRFFLHRGRTMRNTNAL 181

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           L  +  ++G+KTG+T  SG+NIV + +     ++AVV+G  +   RD  A  LI +  
Sbjct: 182 LGSVAGVNGLKTGWTVASGYNIVITAQRGKTRLLAVVLGGNSKDRRDISARRLIEAGF 239


>gi|118591400|ref|ZP_01548798.1| Serine-type D-Ala-D-Ala carboxypeptidase [Stappia aggregata IAM
           12614]
 gi|118436072|gb|EAV42715.1| Serine-type D-Ala-D-Ala carboxypeptidase [Stappia aggregata IAM
           12614]
          Length = 457

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 80/239 (33%), Positives = 138/239 (57%), Gaps = 2/239 (0%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           + ++ID +   +   +      YPASLTK+MT Y+ F+ ++  +  L++ +  SK +A +
Sbjct: 14  AYVLIDASSGAVIEEENATRKWYPASLTKLMTAYVTFKAIREGRASLDSAVVQSKNSAAE 73

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
            PSK+  K  T FT +  +  ++ +SANDV+ A GE I GSE  F  +M+ +A+++GM N
Sbjct: 74  PPSKMGFKVGTRFTVDTALKIILIKSANDVAVALGEAIGGSEAGFIAMMNVEAQRLGMTN 133

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK-LLN 232
           T + N  GL D  Q+TTARD AIL + LR++FP+   ++     R+  + + + N+  L 
Sbjct: 134 TRFYNPHGLPDNRQVTTARDLAILALALRRDFPEARNFYDHPGIRFGKKTLRSANREFLL 193

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
           ++   +G+KTGY  NSG+N+  S    +  ++A+++G  +  ER   A +L      K+
Sbjct: 194 RVPGANGMKTGYICNSGYNVAASATRGNKTLIAIILGAGSGLERTAFARQLFDEGFRKR 252


>gi|17986319|ref|NP_538953.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
           16M]
 gi|225853470|ref|YP_002733703.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC
           23457]
 gi|17981904|gb|AAL51217.1| d-alanyl-d-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
           16M]
 gi|225641835|gb|ACO01749.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC
           23457]
          Length = 370

 Score =  262 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 95/312 (30%), Positives = 165/312 (52%), Gaps = 19/312 (6%)

Query: 33  KILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYII 89
           +I F ++    +A S   A P   SI +DV   ++   +QD  +  YPASLTKMMT Y+ 
Sbjct: 6   RIWFAAVAFSGIALSGAAANP---SIAVDVATGKV-YEQQDAFQRWYPASLTKMMTAYVT 61

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           F  LQS ++ L + + ++  A+ + PSK+  K  +  T +  +  ++ +SANDVS A  E
Sbjct: 62  FRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVAE 121

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            + G+E  F   M+ +A+++GM  + + N +GLHD N  TTARD A+L + LR+ FPQY 
Sbjct: 122 AVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRREFPQYA 181

Query: 210 KYFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            YF+          ++  N+N LL +    DG+KTG+   SGFN+  S       ++A+V
Sbjct: 182 HYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRTLLAIV 241

Query: 268 MGMPTSQERDQKALELITSFLEKK--------TLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
           +G    + R  +A +++T     +        TL+  QT   +   +  ++K++  ++  
Sbjct: 242 LGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQ--AVDMRKAICSEQAM 299

Query: 320 RTYSQFKKIDAK 331
                 ++++ +
Sbjct: 300 ADRWDGREVEGR 311


>gi|262368687|ref|ZP_06062016.1| penicillin-binding protein 6 [Acinetobacter johnsonii SH046]
 gi|262316365|gb|EEY97403.1| penicillin-binding protein 6 [Acinetobacter johnsonii SH046]
          Length = 382

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 80/279 (28%), Positives = 145/279 (51%), Gaps = 8/279 (2%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPK----YSSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           IQ       L +  IS A+ + + P      S +++D    Q+   K  +E   PAS+TK
Sbjct: 2   IQKSALAAALLVPSISFAATVLSSPPELNNKSYVLMDYETGQILASKNENEKLAPASMTK 61

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK---LYLKEKTYFTTEQGILALITRS 139
           MMT +II + L + +L  + ++ ++++A  +  S    +Y+      T  + +  +I +S
Sbjct: 62  MMTSFIIEQKLLAGELTEDEKVRMNESAWCRGSSSESCMYVPLNGTATALEMLRGIIIQS 121

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND S A  E I+G+E  F  +M+ +AK+IGM NT + N++G+  +   +TA+D A L  
Sbjct: 122 GNDASKAMAEHIAGNEGTFVHMMNTEAKRIGMTNTSFMNSTGMPAEGHYSTAKDMATLAQ 181

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            +  +  +YY  +S ++F +      N N LL    ++DG+KTG+T  +G+ + TS +  
Sbjct: 182 HIIHDSSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSAKRG 241

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
              +++V+ G P+ QER  +  E++         K+ Q 
Sbjct: 242 PMRLISVIFGAPSMQERATQTREILAWGYANFETKNVQA 280


>gi|254486408|ref|ZP_05099613.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. GAI101]
 gi|214043277|gb|EEB83915.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. GAI101]
          Length = 389

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 79/264 (29%), Positives = 137/264 (51%), Gaps = 10/264 (3%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQS 95
           +++I+ ++          ++ VID     +   K  D+P  PAS++K+MTLY+ FE ++ 
Sbjct: 9   IALILTTLPGHAFETRASAAYVIDQTTGTVLLAKNADDPLPPASMSKLMTLYMAFEAVER 68

Query: 96  KK----LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            K    L L  ++PVS+ A +   S ++L        E  +  +I  S ND      E +
Sbjct: 69  GKSNGGLDLTEELPVSQHAMSYGGSTMFLDTTDRVKVEDLLRGIIVLSGNDACAVIAEAL 128

Query: 152 S--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
           S  G+E  FA LM+ +A++IGM N+ + N++G        + RD  ++ + L  +FPQYY
Sbjct: 129 SPDGTEAGFARLMTRRAQQIGMTNSTFANSNGWPAAGHRMSMRDLGLVAMRLITDFPQYY 188

Query: 210 KYFSIRKFRYRNRIITN---HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
             FS R+F +  R   N    N LL      DG+KTG+T+ +G+ +V S +  D  ++ V
Sbjct: 189 PLFSQREFLFDGRAPQNKANRNPLLGLGIGADGLKTGHTQEAGYGLVGSAKQGDRRVIFV 248

Query: 267 VMGMPTSQERDQKALELITSFLEK 290
           + G+ T+ ER Q++  ++     +
Sbjct: 249 ISGLETAAERAQESEAIVNWAFRQ 272


>gi|319899483|ref|YP_004159580.1| penicillin-binding protein [Bartonella clarridgeiae 73]
 gi|319403451|emb|CBI77022.1| penicillin-binding protein [Bartonella clarridgeiae 73]
          Length = 367

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 96/292 (32%), Positives = 152/292 (52%), Gaps = 11/292 (3%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL 93
            FLS I+   +S   A P  S   +D    ++    Q  E  YPASLTK+MT Y+IF  +
Sbjct: 8   FFLSFILSITSSLTLAHPFIS---VDATTGRILKHNQAFERWYPASLTKLMTAYVIFRAM 64

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            + K+  +  I +SK AA         K  +  T +  +   + +S ND++ A  E ISG
Sbjct: 65  STGKISSHKHITISKNAAQAPAINSGYKAGSVLTLDTALKITLVKSTNDLAIAISEAISG 124

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S++ F   M+ +A+++GM  T + N SGL D N  +TARD A+L + +R+ FPQY  YFS
Sbjct: 125 SQEAFVQQMNAEAQRLGMFGTNFTNTSGLPDPNNYSTARDIALLAVQIRREFPQYAHYFS 184

Query: 214 IRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           I    + N  +I  N N L+ +   IDG+KTG+   SGFN+V S       I+AV++G  
Sbjct: 185 IPAIDFGNGKKIQFNSNNLIGRFDGIDGMKTGFICASGFNLVASATRNKRTIIAVILGSD 244

Query: 272 TSQERDQKALELITSFLEKK-----TLKHQQTHRKDNLSSTSLKKSLMIKKL 318
           +  +R++KA +L+      K     TL   + +      +T +++ +   + 
Sbjct: 245 SVNKREEKAAQLLDEGFSDKGSLQSTLATLEPYGTKMSQTTDMRQQICAPEA 296


>gi|146340768|ref|YP_001205816.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [Bradyrhizobium
           sp. ORS278]
 gi|146193574|emb|CAL77591.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [Bradyrhizobium
           sp. ORS278]
          Length = 384

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 127/251 (50%), Gaps = 10/251 (3%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++I+++     +   K  DE R P+S+ K+MT  ++F  ++   + LN +  +S+ A 
Sbjct: 23  APTAILVEATSGSVLFEKNADELRAPSSMMKLMTAEVVFNAVKEGTVKLNDEYRISENAW 82

Query: 112 TQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA-ILMSNK 165
            +       S ++    +       +   I +S ND   A  E ++G+EK FA   M+ +
Sbjct: 83  RKGGAPSGTSTMFAALNSKVPVSDLLHGAIIQSGNDACIALAEGMAGNEKIFAADYMTKR 142

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
           A+++G+  + + N++GL D     T R+ ++L   +  +FP++YK F  ++F +      
Sbjct: 143 ARELGLSKSTFANSNGLPDPGNKMTVRELSMLARHIILDFPEFYKIFGEKEFTWNKIRQQ 202

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N N LLN M   DG+KTGYT+  G+ +V S       ++ VV G+   ++R  +A +++ 
Sbjct: 203 NRNPLLNAMEGADGLKTGYTKEGGYGMVGSAVQNGTRLIVVVNGLEDPEDRATEAKKMLE 262

Query: 286 SF---LEKKTL 293
                 E +TL
Sbjct: 263 WGFRNFETRTL 273


>gi|161619952|ref|YP_001593839.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC
           23365]
 gi|189025096|ref|YP_001935864.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus
           S19]
 gi|254696286|ref|ZP_05158114.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254705040|ref|ZP_05166868.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis bv. 3 str. 686]
 gi|161336763|gb|ABX63068.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC
           23365]
 gi|189020668|gb|ACD73390.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus
           S19]
          Length = 370

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 95/312 (30%), Positives = 165/312 (52%), Gaps = 19/312 (6%)

Query: 33  KILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYII 89
           +I F ++    +A S   A P   SI +DV   ++   +QD  +  YPASLTKMMT Y+ 
Sbjct: 6   RIWFAAVAFSGIALSGAAANP---SIAVDVATGKV-YEQQDAFQRWYPASLTKMMTAYVT 61

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           F  LQS ++ L + + ++  A+ + PSK+  K  +  T +  +  ++ +SANDVS A  E
Sbjct: 62  FRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVAE 121

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            + G+E  F   M+ +A+++GM  + + N +GLHD N  TTARD A+L + LR+ FPQY 
Sbjct: 122 AVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRREFPQYA 181

Query: 210 KYFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            YF+          ++  N+N LL +    DG+KTG+   SGFN+  S       ++A+V
Sbjct: 182 HYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRTVLAIV 241

Query: 268 MGMPTSQERDQKALELITSFLEKK--------TLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
           +G    + R  +A +++T     +        TL+  QT   +   +  ++K++  ++  
Sbjct: 242 LGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQ--AVDMRKAICSEQAM 299

Query: 320 RTYSQFKKIDAK 331
                 ++++ +
Sbjct: 300 ADRWDGREVEGR 311


>gi|239625716|ref|ZP_04668747.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519946|gb|EEQ59812.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 392

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 81/269 (30%), Positives = 136/269 (50%), Gaps = 14/269 (5%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           + A+   A P  S+++++ +  Q+   K  DE R PAS+TK+MTL +IF+ LQS K++L 
Sbjct: 26  TQAAVQIAAP--SAVLMEASTGQVIYEKGADEKRSPASVTKVMTLILIFDALQSGKINLT 83

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
            ++  S  A +   S+++L+E    T E  I  ++  S ND S A  E+I G+E++F  +
Sbjct: 84  DEVVTSAHAKSMGGSQVFLEEGEKQTVETLIKCIVIASGNDASVAMAEYIGGTEEEFVRM 143

Query: 162 MSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY- 219
           M+ +A  +GM NT + +  GL +    +TTARD AI+   L   +PQ + Y +I      
Sbjct: 144 MNERAAGLGMTNTHFVDCCGLTESPEHLTTARDIAIMSRELINKYPQIHNYSTIWMENIT 203

Query: 220 -------RNRIITNHNKLLNKMHN--IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
                  +   ++N NKLL    N  + G+KTG T  + + +  +       ++A +M  
Sbjct: 204 HVTKQGTKEFGLSNTNKLLKMATNFKVTGLKTGSTSIAKYCLSATAEKDGVRLIATIMAA 263

Query: 271 PTSQERDQKALELITSFLEKKTLKHQQTH 299
           P  + R   A  L+        L   + H
Sbjct: 264 PDFKARFGDAQTLLNYGYANCKLYEDKEH 292


>gi|120601649|ref|YP_966049.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio vulgaris
           DP4]
 gi|120561878|gb|ABM27622.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Desulfovibrio vulgaris DP4]
          Length = 441

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 81/270 (30%), Positives = 143/270 (52%), Gaps = 4/270 (1%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASELHAKPK---YSSIVIDVNKNQMTGFKQ-DEPRYPA 78
           + +R    +G +L +   +++     HA  +    S+ +ID N  ++   +  D    PA
Sbjct: 9   HGKRFPGQLGIVLLVLTFVVASVCGAHASERLNVVSAFLIDQNSRRVLFEQNADAQIPPA 68

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           SLTK++++Y+  +++++ K  L  ++ +S  AA    S+++L      + ++ ++ +   
Sbjct: 69  SLTKVISMYVALDHIRAGKASLADKVKISARAARTGGSRMFLTRGETVSLDELLMGMAVS 128

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND S A  E I+GS  +F  LM+ KA+ +GM  T ++N +GL    Q TTARD   L 
Sbjct: 129 SGNDASVAVAEHIAGSTDRFVQLMNAKARALGMTETTFRNVNGLPAAGQKTTARDMGKLA 188

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
           +      PQ  +Y S R  R+   I TN N +L      DG+KTG+   SG+N++++++ 
Sbjct: 189 VNYLTAHPQALRYHSTRFIRHNKVITTNKNPMLGNCEGADGLKTGWVCASGYNLISTVKR 248

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFL 288
            +  +VAVV+G   SQ R Q+   LI +  
Sbjct: 249 GNTRLVAVVLGAENSQVRGQEMNRLIDAGY 278


>gi|89074850|ref|ZP_01161304.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium sp. SKA34]
 gi|89049425|gb|EAR54987.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium sp. SKA34]
          Length = 459

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 73/266 (27%), Positives = 132/266 (49%), Gaps = 9/266 (3%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
               L+A+   + I+ID N  ++           PAS TK+M +YI+ + L    + L++
Sbjct: 97  FPPNLNAR---AFILIDANTGRIVASNNANMRMAPASTTKLMLMYIVEQKLADGVISLDS 153

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           ++ V + A     S+++LK  +Y + +  I  +I  S ND +     +++GS+  F  +M
Sbjct: 154 KVLVPEVAWRTGGSRMFLKPGSYVSVKDLIQGVIVESGNDAAVTLANYVAGSQSSFVSMM 213

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
           +  A K+GM NT +    GL      +TA D  +LG  +  ++PQY+ +FS + F Y + 
Sbjct: 214 NATAVKLGMHNTHFTTVMGLPAPAHFSTAYDLGLLGQHIMNDYPQYFHFFSQKYFEYNHI 273

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD--DPIVAVVMGMPTSQERDQKA 280
              N N+LL       G+KTG T  +G+++V+S +  D    +VAVV+G  +  +   ++
Sbjct: 274 RQPNFNRLLFTYQYATGMKTGSTEAAGYSLVSSAKMPDNPMKLVAVVLGTQSLNDVAAQS 333

Query: 281 LELIT---SFLEKKTLKHQQTHRKDN 303
             L      F ++ TL    +   + 
Sbjct: 334 KGLFNYGFRFFKQDTLYAADSKLSEQ 359


>gi|256045637|ref|ZP_05448515.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256112362|ref|ZP_05453283.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 3 str.
           Ether]
 gi|256263050|ref|ZP_05465582.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
           str. 63/9]
 gi|260562941|ref|ZP_05833427.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
           16M]
 gi|265992060|ref|ZP_06104617.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265993797|ref|ZP_06106354.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
           str. Ether]
 gi|260152957|gb|EEW88049.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
           16M]
 gi|262764778|gb|EEZ10699.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
           str. Ether]
 gi|263003126|gb|EEZ15419.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263092926|gb|EEZ17101.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
           str. 63/9]
 gi|326410032|gb|ADZ67097.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis M28]
 gi|326539748|gb|ADZ87963.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis
           M5-90]
          Length = 371

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 95/312 (30%), Positives = 165/312 (52%), Gaps = 19/312 (6%)

Query: 33  KILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYII 89
           +I F ++    +A S   A P   SI +DV   ++   +QD  +  YPASLTKMMT Y+ 
Sbjct: 7   RIWFAAVAFSGIALSGAAANP---SIAVDVATGKV-YEQQDAFQRWYPASLTKMMTAYVT 62

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           F  LQS ++ L + + ++  A+ + PSK+  K  +  T +  +  ++ +SANDVS A  E
Sbjct: 63  FRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVAE 122

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            + G+E  F   M+ +A+++GM  + + N +GLHD N  TTARD A+L + LR+ FPQY 
Sbjct: 123 AVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRREFPQYA 182

Query: 210 KYFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            YF+          ++  N+N LL +    DG+KTG+   SGFN+  S       ++A+V
Sbjct: 183 HYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRTLLAIV 242

Query: 268 MGMPTSQERDQKALELITSFLEKK--------TLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
           +G    + R  +A +++T     +        TL+  QT   +   +  ++K++  ++  
Sbjct: 243 LGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQ--AVDMRKAICSEQAM 300

Query: 320 RTYSQFKKIDAK 331
                 ++++ +
Sbjct: 301 ADRWDGREVEGR 312


>gi|163869341|ref|YP_001610597.1| penicillin-binding protein [Bartonella tribocorum CIP 105476]
 gi|161019044|emb|CAK02602.1| penicillin-binding protein [Bartonella tribocorum CIP 105476]
          Length = 363

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 95/292 (32%), Positives = 154/292 (52%), Gaps = 11/292 (3%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL 93
           LF S I+   ++   A+P  S   +DV    +    Q  E  YPASLTK+MT Y+IF  +
Sbjct: 8   LFFSFILSLSSTFSLAQPFIS---VDVTTEHILKHNQAFERWYPASLTKLMTAYVIFRAM 64

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
              ++  N  I +S+ AA     +   K  +  T +  +   + +S ND++ A  E I+G
Sbjct: 65  SRGEISPNKPITISEYAAKAPSYRSGYKAGSVLTLDTALSITMVKSTNDLAIAMSEAIAG 124

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+K F   M+++AK++GM  T + NASGL D    +TARD A+L + +R+ FPQY  YFS
Sbjct: 125 SQKDFVRKMNSEAKRLGMFGTHFANASGLPDPQNYSTARDIALLAVQIRREFPQYAHYFS 184

Query: 214 IRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           I    + N  +I  N N L+ + + IDG+KTG+   SGFN+V S       I+AV++G  
Sbjct: 185 IPAIDFGNNRKIQHNSNNLIGRFYGIDGMKTGFICASGFNLVASATRNKRTIIAVILGAN 244

Query: 272 TSQERDQKALELITSFL-----EKKTLKHQQTHRKDNLSSTSLKKSLMIKKL 318
              ER++KA +L+          + TL   + +  +   + ++++     + 
Sbjct: 245 NVSEREEKAAQLLEIGFLHQGSPQLTLATLKPYGSNITQANNMRQQTCTPEA 296


>gi|46581059|ref|YP_011867.1| D-alanyl-D-alanine carboxypeptidase family protein [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450480|gb|AAS97127.1| D-alanyl-D-alanine carboxypeptidase family protein [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311234737|gb|ADP87591.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio vulgaris
           RCH1]
          Length = 441

 Score =  262 bits (669), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 81/270 (30%), Positives = 143/270 (52%), Gaps = 4/270 (1%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASELHAKPK---YSSIVIDVNKNQMTGFKQ-DEPRYPA 78
           + +R    +G +L +   +++     HA  +    S+ +ID N  ++   +  D    PA
Sbjct: 9   HGKRFPGQLGIVLLVLTFVVASVCGAHASERLNVVSAFLIDQNSRRVLFEQNADAQIPPA 68

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           SLTK++++Y+  +++++ K  L  ++ +S  AA    S+++L      + ++ ++ +   
Sbjct: 69  SLTKVISMYVALDHIRAGKASLADKVKISARAARTGGSRMFLTRGETVSLDELLMGMAVS 128

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND S A  E I+GS  +F  LM+ KA+ +GM  T ++N +GL    Q TTARD   L 
Sbjct: 129 SGNDASVAVAEHIAGSTDRFVQLMNAKARALGMTETTFRNVNGLPAAGQKTTARDMGKLA 188

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
           +      PQ  +Y S R  R+   I TN N +L      DG+KTG+   SG+N++++++ 
Sbjct: 189 VSYLTAHPQALRYHSTRFIRHNKVITTNKNPMLGNCEGADGLKTGWVCASGYNLISTVKR 248

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFL 288
            +  +VAVV+G   SQ R Q+   LI +  
Sbjct: 249 GNTRLVAVVLGAENSQVRGQEMNRLIDAGY 278


>gi|28211200|ref|NP_782144.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88]
 gi|28203640|gb|AAO36081.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88]
          Length = 395

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 87/297 (29%), Positives = 142/297 (47%), Gaps = 16/297 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+++++ N  ++   K  +E   PAS+TK+MT+ I  E + S K+ L  +I VS+ A 
Sbjct: 41  ASSALLMEPNSGKIIYEKNANEKLPPASVTKIMTMLIAMEAVDSGKIKLTDKITVSENAK 100

Query: 112 TQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                  S + L      T E+ +  +   S ND +TA  E++ GSE+ F   M+++AK 
Sbjct: 101 KNGQGGNSSMLLDTGEIRTVEEILKGIAIASGNDAATAMAEYLDGSEEAFVKTMNDRAKA 160

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRI 223
           +GM+NT +KN SGL ++  ITTA D A++   L K  P   KY      +I + R     
Sbjct: 161 LGMKNTNFKNCSGLPEEGHITTAYDIALMSKELLK-HPTILKYTGTYMETISEGRKSPIG 219

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           + NHNKL+      DG+KTGYT  + + I  +       ++ V+MG P  + R+++A  L
Sbjct: 220 LVNHNKLVRFFKGCDGLKTGYTSEAKYCISATAVRDGVRVLTVIMGAPNYKIRNKEASNL 279

Query: 284 ITSFL----EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
           +         K  +K      K  L  +  +    I K         +  +K   T+
Sbjct: 280 MNYGFSKFENKNIIKRDSEVEKVKLGKS--EDKFFIAKALEDLDVVVERGSKDKITK 334


>gi|291545871|emb|CBL18979.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. SR1/5]
          Length = 395

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 74/271 (27%), Positives = 125/271 (46%), Gaps = 12/271 (4%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
              +++++     +   +  D  R PAS+TK+MTL +IF+ ++   LHL   I  S  A 
Sbjct: 41  APGAVLMEKETGTVIYSRDPDTRRSPASITKIMTLILIFDAIREGTLHLEDSITTSAYAR 100

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S+++L+E    T E  I  ++  S ND S A  E ++G+E+ F   M+ +AK +GM
Sbjct: 101 SMGGSQVFLEEGEKQTAETMIKCIVIASGNDASVAMAEHVAGTEQAFVERMNERAKDLGM 160

Query: 172 QNTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--------R 222
           +NT + +  GL + +   TT  D A++   L   +P+   Y S+      +         
Sbjct: 161 KNTHFVDCCGLTESQEHYTTPYDIALMSRELISRYPEVLTYSSVWIEDITHVTRKGSSKF 220

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            +TN NKLL       G+KTG T  + + +          ++A VM  P  + R + A  
Sbjct: 221 TLTNTNKLLRSYEGCMGLKTGSTSIAKYCLSAVAERNGITLIASVMAAPDPKTRFRDAAA 280

Query: 283 LITSFLEKKTLKHQQTHRKDNLSSTSLKKSL 313
           L+     K TL        + L    L+K +
Sbjct: 281 LLNYGFSKCTLYLDDA--LEPLKPLKLRKGV 309


>gi|23502884|ref|NP_699011.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330]
 gi|62290881|ref|YP_222674.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str.
           9-941]
 gi|82700793|ref|YP_415367.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis biovar
           Abortus 2308]
 gi|237816389|ref|ZP_04595382.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A]
 gi|254690170|ref|ZP_05153424.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 6 str.
           870]
 gi|254694661|ref|ZP_05156489.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 3 str.
           Tulya]
 gi|254700670|ref|ZP_05162498.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis bv. 5 str. 513]
 gi|254731203|ref|ZP_05189781.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 4 str.
           292]
 gi|256060003|ref|ZP_05450185.1| D-alanyl-D-alanine carboxypeptidase [Brucella neotomae 5K33]
 gi|256258424|ref|ZP_05463960.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 9 str.
           C68]
 gi|256370435|ref|YP_003107946.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915]
 gi|260546143|ref|ZP_05821883.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038]
 gi|260567492|ref|ZP_05837962.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40]
 gi|260755709|ref|ZP_05868057.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
           str. 870]
 gi|260758934|ref|ZP_05871282.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
           str. 292]
 gi|260760656|ref|ZP_05872999.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260884736|ref|ZP_05896350.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
           str. C68]
 gi|261214985|ref|ZP_05929266.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
           str. Tulya]
 gi|261323978|ref|ZP_05963175.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
 gi|261751178|ref|ZP_05994887.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
           513]
 gi|261755741|ref|ZP_05999450.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
           686]
 gi|294851267|ref|ZP_06791940.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026]
 gi|297247266|ref|ZP_06930984.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str.
           B3196]
 gi|306842839|ref|ZP_07475479.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO2]
 gi|23348913|gb|AAN30926.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330]
 gi|62197013|gb|AAX75313.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str.
           9-941]
 gi|82616894|emb|CAJ11993.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella
           melitensis biovar Abortus 2308]
 gi|237788456|gb|EEP62671.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A]
 gi|256000598|gb|ACU48997.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915]
 gi|260096250|gb|EEW80126.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038]
 gi|260157010|gb|EEW92090.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40]
 gi|260669252|gb|EEX56192.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
           str. 292]
 gi|260671088|gb|EEX57909.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260675817|gb|EEX62638.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
           str. 870]
 gi|260874264|gb|EEX81333.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
           str. C68]
 gi|260916592|gb|EEX83453.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
           str. Tulya]
 gi|261299958|gb|EEY03455.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
 gi|261740931|gb|EEY28857.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
           513]
 gi|261745494|gb|EEY33420.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
           686]
 gi|294819856|gb|EFG36855.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026]
 gi|297174435|gb|EFH33782.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str.
           B3196]
 gi|306287033|gb|EFM58544.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO2]
          Length = 371

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 95/312 (30%), Positives = 165/312 (52%), Gaps = 19/312 (6%)

Query: 33  KILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYII 89
           +I F ++    +A S   A P   SI +DV   ++   +QD  +  YPASLTKMMT Y+ 
Sbjct: 7   RIWFAAVAFSGIALSGAAANP---SIAVDVATGKV-YEQQDAFQRWYPASLTKMMTAYVT 62

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           F  LQS ++ L + + ++  A+ + PSK+  K  +  T +  +  ++ +SANDVS A  E
Sbjct: 63  FRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVAE 122

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            + G+E  F   M+ +A+++GM  + + N +GLHD N  TTARD A+L + LR+ FPQY 
Sbjct: 123 AVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRREFPQYA 182

Query: 210 KYFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            YF+          ++  N+N LL +    DG+KTG+   SGFN+  S       ++A+V
Sbjct: 183 HYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRTVLAIV 242

Query: 268 MGMPTSQERDQKALELITSFLEKK--------TLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
           +G    + R  +A +++T     +        TL+  QT   +   +  ++K++  ++  
Sbjct: 243 LGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQ--AVDMRKAICSEQAM 300

Query: 320 RTYSQFKKIDAK 331
                 ++++ +
Sbjct: 301 ADRWDGREVEGR 312


>gi|56417129|ref|YP_154203.1| hypothetical protein AM1091 [Anaplasma marginale str. St. Maries]
 gi|56388361|gb|AAV86948.1| hypothetical protein AM1091 [Anaplasma marginale str. St. Maries]
          Length = 380

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 70/272 (25%), Positives = 135/272 (49%), Gaps = 13/272 (4%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYS---------SIVIDVNKNQMTGFKQ-DEPRYPA 78
           + +   L  +   +++A    A+P Y+         +IV ++    +      D    P+
Sbjct: 4   RFLLSFLVPAFCCLALAP---ARPSYALKMHTKAPHAIVYELGSRTVLFEHDADVAAAPS 60

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           S++K+MTLY++F++L +  + ++    VS++A  +  S  +LK          I+     
Sbjct: 61  SMSKLMTLYLVFQHLHAGLIKMDDTFSVSESAWKRGGSSAFLKVGQMVKVRDLIMGAAVS 120

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND   A  E +SGS+++F   +++ AK++ + ++ + N +G  D+  + + RD   L 
Sbjct: 121 SGNDACIALAEGVSGSQEQFVEDINSLAKEMNLAHSSFTNVTGWPDEGHLMSVRDILTLS 180

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
           + + ++FP+YY  F  ++F Y      N+N LLN    +DGIKTG+T  +G+ I  S + 
Sbjct: 181 VRIFEDFPEYYHVFGEKQFTYNGVTQKNYNTLLNYNIGVDGIKTGHTEKAGYGIAASAQK 240

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            +  +  VV G+ T  ER  +   L+     +
Sbjct: 241 DNRRVFVVVNGLKTETERAYETKRLLLYAFNR 272


>gi|154483610|ref|ZP_02026058.1| hypothetical protein EUBVEN_01314 [Eubacterium ventriosum ATCC
           27560]
 gi|149735520|gb|EDM51406.1| hypothetical protein EUBVEN_01314 [Eubacterium ventriosum ATCC
           27560]
          Length = 387

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/290 (27%), Positives = 140/290 (48%), Gaps = 14/290 (4%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S ++++ +   +      +E   PAS+TK+MTL +IF+ + S K+ L      S  A + 
Sbjct: 33  SCVLMESSTGMVLYENNQNEKLSPASITKIMTLVLIFDAIHSGKIKLTDVATTSAYAKSM 92

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+E    T E  I  +I  S ND S    E I+GSE+ F   M+ +AK +GM N
Sbjct: 93  GGSQVFLEEGETQTVETLIKCIIIASGNDASVVMAEMIAGSEEAFVKKMNERAKSLGMNN 152

Query: 174 TIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--------I 224
           T + +  GL D  +  TTA+D A++   L + +P+ +KY +I      ++         +
Sbjct: 153 THFIDCCGLTDSDDHYTTAKDVALMSRELIEKYPEIFKYSTIWMESITHKTKAGEKEFVL 212

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           +N NKLL     + G+KTG T  + + + T        ++AVVM  P  + R +++ +LI
Sbjct: 213 SNTNKLLKTNQYVKGLKTGSTSKAKYCVSTVAEKDGVQLIAVVMAAPDYKIRFKESEKLI 272

Query: 285 TSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
                   +       K  +  T+ KK     K+  + ++F  +D K   
Sbjct: 273 NYGFSNCKVYTDNDGYKTKIKVTNGKKD----KVDISTNRFSYVDTKGRD 318


>gi|306839705|ref|ZP_07472507.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NF 2653]
 gi|306405165|gb|EFM61442.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NF 2653]
          Length = 370

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 95/312 (30%), Positives = 165/312 (52%), Gaps = 19/312 (6%)

Query: 33  KILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYII 89
           +I F ++    +A S   A P   SI +DV   ++   +QD  +  YPASLTKMMT Y+ 
Sbjct: 6   RIWFAAVAFSGIALSGAAANP---SIAVDVATGKV-YEQQDAFQRWYPASLTKMMTAYVT 61

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           F  LQS ++ L + + ++  A+ + PSK+  K  +  T +  +  ++ +SANDVS A  E
Sbjct: 62  FRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVAE 121

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            + G+E  F   M+ +A+++GM  + + N +GLHD N  TTARD A+L + LR+ FPQY 
Sbjct: 122 AVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRREFPQYA 181

Query: 210 KYFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            YF+          ++  N+N LL +    DG+KTG+   SGFN+  S       ++A+V
Sbjct: 182 HYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRTVLAIV 241

Query: 268 MGMPTSQERDQKALELITSFLEKK--------TLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
           +G    + R  +A +++T     +        TL+  QT   +   +  ++K++  ++  
Sbjct: 242 LGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPTQTANLNQ--AVDMRKAICSEQAM 299

Query: 320 RTYSQFKKIDAK 331
                 ++++ +
Sbjct: 300 ADRWDGREVEGR 311


>gi|84499966|ref|ZP_00998232.1| D-alanyl-D-alanine carboxypeptidase [Oceanicola batsensis HTCC2597]
 gi|84391900|gb|EAQ04168.1| D-alanyl-D-alanine carboxypeptidase [Oceanicola batsensis HTCC2597]
          Length = 406

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/259 (31%), Positives = 133/259 (51%), Gaps = 10/259 (3%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++ V+D+    +   K  D P  PAS++K+MTLYI FE L+  +L L+ ++PVS  A 
Sbjct: 34  ARAAYVMDLTTRTVLLDKNADMPLPPASMSKLMTLYIAFEALRDGRLRLDEELPVSSHAM 93

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
           +   S ++L        E  +  +I  S ND      E +S  G+E  FA  M+ +A+K+
Sbjct: 94  SYGGSTMFLDTTDRVKVEDLLRGIIVLSGNDACVVLAEALSPDGTEAGFARYMTQRAQKM 153

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII---TN 226
           GM N+ + N++G        + RD A+L   L ++FP +Y  F+ R F +  R     TN
Sbjct: 154 GMTNSTFANSNGWPAAGHRMSMRDLALLAARLIEDFPNFYPLFAERTFAFDGRAPQNNTN 213

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            N LL      DG+KTG+T  +G+ +V S +  D  ++  + G+PT+  R Q++  +I  
Sbjct: 214 RNPLLGLGIGADGLKTGHTEEAGYGLVGSAKQGDRRVIFALSGLPTTAARAQESEAIINW 273

Query: 287 FLEKKT----LKHQQTHRK 301
              + T    LK  +T  K
Sbjct: 274 AFRQFTQKSLLKAGETVTK 292


>gi|147677612|ref|YP_001211827.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum
           thermopropionicum SI]
 gi|146273709|dbj|BAF59458.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum
           thermopropionicum SI]
          Length = 381

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/283 (27%), Positives = 131/283 (46%), Gaps = 14/283 (4%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++++D    Q+   K   + R PAS TK+MT  +  E        L   + VS  AA+ 
Sbjct: 44  AAVLMDARTGQILYEKNARQKRPPASTTKIMTALLALEGGD-----LQQIVTVSPNAAST 98

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             + L L+     T E+ I   +  S ND   A  E ISG+E+ F +LM+ KAK IG ++
Sbjct: 99  GEASLDLRPGEKLTLEELIYGAMLESGNDACVAIAEHISGTEENFVLLMNQKAKMIGAED 158

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN---RIITNHNKL 230
           T +KN++GL      TTARD A++     +N   + K  S R         R ++N N+L
Sbjct: 159 TSFKNSNGLPAAGHCTTARDLAVITRYALRNDI-FRKVVSTRGRAVGGEKCRYLSNTNRL 217

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L      DG+KTG T  +G  +V S       +++VV+    S +R   +++L+    E 
Sbjct: 218 LWSYAWADGVKTGTTGEAGNCLVASATKDGRQLISVVL---HSDDRWLDSVKLMEFGFEN 274

Query: 291 KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAH 333
             L  Q   R + ++  ++K+    +      +    +  K  
Sbjct: 275 FNLV-QAVGRGEPIARVTVKEGTEKEVKAVAGAGIDAVVPKNG 316


>gi|254995301|ref|ZP_05277491.1| hypothetical protein AmarM_05055 [Anaplasma marginale str.
           Mississippi]
          Length = 370

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 70/272 (25%), Positives = 135/272 (49%), Gaps = 13/272 (4%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYS---------SIVIDVNKNQMTGFKQ-DEPRYPA 78
           + +   L  +   +++A    A+P Y+         +IV ++    +      D    P+
Sbjct: 4   RFLLSFLVPAFCCLALAP---ARPSYALKMHTKAPHAIVYELGSRTVLFEHDADVAAAPS 60

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           S++K+MTLY++F++L +  + ++    VS++A  +  S  +LK          I+     
Sbjct: 61  SMSKLMTLYLVFQHLHAGLIKMDDTFSVSESAWKRGGSSAFLKVGQMVKVRDLIMGAAVS 120

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND   A  E +SGS+++F   +++ AK++ + ++ + N +G  D+  + + RD   L 
Sbjct: 121 SGNDACIALAEGVSGSQEQFVEDINSLAKEMNLAHSSFTNVTGWPDEGHLMSVRDILTLS 180

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
           + + ++FP+YY  F  ++F Y      N+N LLN    +DGIKTG+T  +G+ I  S + 
Sbjct: 181 VRIFEDFPEYYHVFGEKQFTYNGVTQKNYNTLLNYNIGVDGIKTGHTEKAGYGIAASAQK 240

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            +  +  VV G+ T  ER  +   L+     +
Sbjct: 241 DNRRVFVVVNGLKTETERAYETKRLLLYAFNR 272


>gi|323702413|ref|ZP_08114077.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532552|gb|EGB22427.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 400

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/264 (26%), Positives = 123/264 (46%), Gaps = 15/264 (5%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++I++D    Q+   K    R P AS TK+MT  +  E       +L +   VSK AA  
Sbjct: 63  AAILMDATTGQVLYEKNAHKRRPIASTTKIMTALLAIECG-----NLKSVATVSKHAAGT 117

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S +YL+     T E  +   +  S ND   A  E I+G E+ F  LM+ KA  +G +N
Sbjct: 118 EGSSIYLRAGEKLTLEHLLYGALMHSGNDACVAIAEHIAGKEELFVNLMNYKAYLLGARN 177

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN----RIITNHNK 229
           T + N +GL     ++TA D A++     KN P + +  + R  + +     R + N N+
Sbjct: 178 THFANTNGLPHDQHLSTAYDLALITRHALKN-PVFKQIVATRTHKIKGPQGLRYLANTNQ 236

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           +L      +G+KTG T  +G  +V+S       ++AVV+      +R   ++ L+    +
Sbjct: 237 MLWSYQGANGVKTGTTNAAGKCLVSSATRDGRLLIAVVLHAG---DRYADSIRLLDYGFQ 293

Query: 290 KKTLKHQQTHRKDNLSSTSLKKSL 313
             T  H    + + +S+  + + +
Sbjct: 294 NFT-NHTVVKKGEVVSTIKVNEGI 316


>gi|254477194|ref|ZP_05090580.1| D-alanyl-D-alanine carboxypeptidase [Ruegeria sp. R11]
 gi|214031437|gb|EEB72272.1| D-alanyl-D-alanine carboxypeptidase [Ruegeria sp. R11]
          Length = 405

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/283 (27%), Positives = 143/283 (50%), Gaps = 13/283 (4%)

Query: 29  QLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
            L G  L ++  ++   S L A        ++ V+D   + +   K  D    PAS++K+
Sbjct: 17  ALTGMKLAVAAGLLVSVSALSAAAFDTRARAAYVLDQETDTVLLNKNGDLALPPASMSKL 76

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MTLY+ FE ++  +L L+ ++PVS+ A +   S ++L  +     E  +  +I  S ND 
Sbjct: 77  MTLYVAFEAIRDGRLTLDERLPVSEHAMSYKGSTMFLNTQDRVRVEDLLRGIIVLSGNDA 136

Query: 144 STAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
                E +S  G+E  FA  M+ +A+++GM+N+ + N++G        + +D AIL   L
Sbjct: 137 CVVIAEALSPDGTEAGFARYMTKRAQEMGMENSTFANSNGWPAAGHRMSVQDLAILAERL 196

Query: 202 RKNFPQYYKYFSIRKFRYRNR---IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
            ++FP+YY  F+ ++F +  R      N N LL      DG+KTG+T  +G+ +V S + 
Sbjct: 197 IEDFPEYYPLFAEKRFEFDGRAPSNTRNRNPLLGLGIGADGLKTGHTSEAGYGLVGSAKQ 256

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLE---KKTLKHQQT 298
            D  ++ V+ G+ ++  R ++A  ++        KKT+     
Sbjct: 257 GDRRVIFVITGLDSTNARAEEAEAIVNWSFRQFAKKTVAKAGV 299


>gi|254713557|ref|ZP_05175368.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti M644/93/1]
 gi|254716088|ref|ZP_05177899.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti M13/05/1]
 gi|261217856|ref|ZP_05932137.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
 gi|261321294|ref|ZP_05960491.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
 gi|260922945|gb|EEX89513.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
 gi|261293984|gb|EEX97480.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
          Length = 371

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 95/312 (30%), Positives = 165/312 (52%), Gaps = 19/312 (6%)

Query: 33  KILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYII 89
           +I F ++    +A S   A P   SI +DV   ++   +QD  +  YPASLTKMMT Y+ 
Sbjct: 7   RIWFAAVAFSGIALSGAAANP---SIAVDVATGKV-YEQQDAFQRWYPASLTKMMTAYVT 62

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           F  LQS ++ L + + ++  A+ + PSK+  K  +  T +  +  ++ +SANDVS A  E
Sbjct: 63  FRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVAE 122

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            + G+E  F   M+ +A+++GM  + + N +GLHD N  TTARD A+L + LR+ FPQY 
Sbjct: 123 AVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRREFPQYA 182

Query: 210 KYFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            YF+          ++  N+N LL +    DG+KTG+   SGFN+  S       ++A+V
Sbjct: 183 HYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRTVLAIV 242

Query: 268 MGMPTSQERDQKALELITSFLEKK--------TLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
           +G    + R  +A +++T     +        TL+  QT   +   +  ++K++  ++  
Sbjct: 243 LGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQ--AVDMRKAICSEQAM 300

Query: 320 RTYSQFKKIDAK 331
                 ++++ +
Sbjct: 301 ADRWDGREVEGR 312


>gi|304316798|ref|YP_003851943.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778300|gb|ADL68859.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 384

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 75/257 (29%), Positives = 123/257 (47%), Gaps = 20/257 (7%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
             ++ AK   ++IV+D    ++   K  +E    AS TK+MTL +  EY      +LN  
Sbjct: 27  PPQIAAK---AAIVMDQKSGRILYEKNINEKLPMASTTKIMTLLLALEYG-----NLNDI 78

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           + VSK AA+   S ++L      +    +  L+  S ND +TA  E I GS +KFA +M+
Sbjct: 79  VTVSKRAASVGGSSIWLAPGEKLSLIDLLYGLMLNSGNDAATAIAEHIGGSVEKFAEMMN 138

Query: 164 NKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR- 220
            KAK IG  +T +   SGL     N  TTA D A++      N+ ++ +  S ++     
Sbjct: 139 KKAKDIGAYSTNFVTPSGLDIGINNHYTTAYDLALITRYAFNNYSKFAEIVSTKEKTIPW 198

Query: 221 -----NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
                +R + N NK+L +    DG+KTG+T  +G  +V S       +++VV+      E
Sbjct: 199 SGRDYDRYLRNKNKMLWQYEGGDGVKTGFTNKAGRCLVASATRDGHRLISVVLNSGPMWE 258

Query: 276 RDQKALELITSFLEKKT 292
               + +++    EK  
Sbjct: 259 ---DSQKILDYSFEKYK 272


>gi|254718081|ref|ZP_05179892.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. 83/13]
 gi|265983032|ref|ZP_06095767.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
 gi|264661624|gb|EEZ31885.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
          Length = 371

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 95/312 (30%), Positives = 165/312 (52%), Gaps = 19/312 (6%)

Query: 33  KILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYII 89
           +I F ++    +A S   A P   SI +DV   ++   +QD  +  YPASLTKMMT Y+ 
Sbjct: 7   RIWFAAVAFSGIALSGAAANP---SIAVDVATGKV-YEQQDAFQRWYPASLTKMMTAYVT 62

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           F  LQS ++ L + + ++  A+ + PSK+  K  +  T +  +  ++ +SANDVS A  E
Sbjct: 63  FRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVAE 122

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            + G+E  F   M+ +A+++GM  + + N +GLHD N  TTARD A+L + LR+ FPQY 
Sbjct: 123 AVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRREFPQYA 182

Query: 210 KYFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            YF+          ++  N+N LL +    DG+KTG+   SGFN+  S       ++A+V
Sbjct: 183 HYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRTVLAIV 242

Query: 268 MGMPTSQERDQKALELITSFLEKK--------TLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
           +G    + R  +A +++T     +        TL+  QT   +   +  ++K++  ++  
Sbjct: 243 LGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPTQTANLNQ--AVDMRKAICSEQAM 300

Query: 320 RTYSQFKKIDAK 331
                 ++++ +
Sbjct: 301 ADRWDGREVEGR 312


>gi|320354031|ref|YP_004195370.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfobulbus propionicus
           DSM 2032]
 gi|320122533|gb|ADW18079.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfobulbus propionicus
           DSM 2032]
          Length = 374

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 89/272 (32%), Positives = 144/272 (52%), Gaps = 8/272 (2%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           + +   P  S++VI+ +  ++      D   YPAS+ K+M LY+I + ++   L L+  +
Sbjct: 26  AVISQDPYVSALVIEADSGKVLFESNADVKVYPASVLKLMDLYVILDRIEQGALKLDEMV 85

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
           PV+  A+    S++YL  K  F+ E+ I AL+ +SAND + A    I+GS++ F  LM+ 
Sbjct: 86  PVTVEASKTGGSQVYLDPKEQFSVEELIYALMVQSANDAAVALATHIAGSKEGFVALMNQ 145

Query: 165 KAKKIGMQNTIYKNASGLHDKNQ----ITTARDQAILGILLRKNFPQYYKYFS--IRKFR 218
           KA+ +GM+++++ +  GL         +TTARD AIL   L K  P+  KY     R FR
Sbjct: 146 KAQALGMKHSVFHSVHGLPPSEGQEPDVTTARDLAILCRELAKR-PEALKYTGTQTRGFR 204

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
               I+ NHNKLL ++   DG KTGY + +GF+I  + +     I+ +VMG    + RD 
Sbjct: 205 EDKFIMRNHNKLLTQVPGCDGFKTGYYQAAGFSIAATAKKGGVRIITLVMGSKDRKVRDA 264

Query: 279 KALELITSFLEKKTLKHQQTHRKDNLSSTSLK 310
           KA+EL+         K +        + T+  
Sbjct: 265 KAVELLAKGFAIVPPKPETAAAPPQSAVTAPP 296


>gi|114799690|ref|YP_760518.1| D-alanyl-D-alanine carboxypeptidase [Hyphomonas neptunium ATCC
           15444]
 gi|114739864|gb|ABI77989.1| D-alanyl-D-alanine carboxypeptidase [Hyphomonas neptunium ATCC
           15444]
          Length = 378

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/272 (27%), Positives = 134/272 (49%), Gaps = 7/272 (2%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLY 87
                +   ++   S+++++   P   ++++D    ++   K  DEP  PAS+TKMMT +
Sbjct: 1   MFAALLTLGALSGASVSAQMIDTPAEYAVIMDHATGKILYSKRGDEPMTPASMTKMMTAF 60

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRSAND 142
           ++FE +   +L L  +  VS+ A  +       S + L  K   T E+ +  +IT S ND
Sbjct: 61  VVFELIDRGELSLTDKFTVSEDAWRRGGFPSGTSTMGLVPKDTPTVEELLHGVITMSGND 120

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
                 + ISGSE+ F+  M+  A ++G+ +  + N +GL     + +A D A L  +  
Sbjct: 121 ACIVLAQGISGSEEAFSRRMTEMAHELGLSSVNFVNTTGLEGDGHVVSAEDLARLAKMTI 180

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
             +PQYY+++S+  + +R     N N LL  +   DG+KTG+  +SG+ +  S       
Sbjct: 181 DKYPQYYEWYSLPSYTWREYTQANRNPLLE-VAGADGLKTGHLESSGYGLTASAVRDGVR 239

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
              VV G+PT   R Q++  L+    +   LK
Sbjct: 240 RTIVVNGLPTMAARAQESERLMRVAFQSFDLK 271


>gi|85715534|ref|ZP_01046515.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
           sp. Nb-311A]
 gi|85697729|gb|EAQ35605.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
           sp. Nb-311A]
          Length = 413

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 126/254 (49%), Gaps = 6/254 (2%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E++     ++I+++     +   K  DE R P+S+ K+MT  ++F  ++  ++ L  +  
Sbjct: 47  EIYETSAPTAILVEAKSGSVLFEKNADELRAPSSMMKLMTAEVVFNAIRKGEIKLTDEYV 106

Query: 106 VSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
           +S+    +       S ++    +  + +  +   I +S ND   A  E I+G+E  FA 
Sbjct: 107 ISENTWRKGGAPSGGSTMFAAINSRVSVQDLLHGAIIQSGNDSCMALAEGIAGNESAFAE 166

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
            M+ +A+++G+  + + N++GL   +   T R+ A+L   +   +P +YK F  R+F + 
Sbjct: 167 KMTARARELGLTRSTFANSNGLPHPDNKMTVRELAVLARHIILTYPDFYKLFGEREFTWN 226

Query: 221 NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
                N N LL  M   DG+KTGYT+  G+ +V S+      ++ VV G+ ++ +R   A
Sbjct: 227 KIRQLNRNALLTAMDGADGLKTGYTKEGGYGMVGSVVQNGTRLIVVVNGLESADDRATAA 286

Query: 281 LELITSFLEKKTLK 294
            +L+        ++
Sbjct: 287 KKLLEWGFRNFEIR 300


>gi|229026963|ref|ZP_04183283.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH1272]
 gi|228734350|gb|EEL85024.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH1272]
          Length = 453

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 89/375 (23%), Positives = 167/375 (44%), Gaps = 50/375 (13%)

Query: 1   MLQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKI-LFLSIIMISMASELHAKPKY----- 54
           ML+Q   S+  K         ++ +R I ++  + LF S+I+    +     P       
Sbjct: 1   MLEQLFLST--KILEVTEVKGMFCKRFIAIVTVLTLFCSMIVTFGRASAETVPAIDVEAG 58

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           S+I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S+ A   
Sbjct: 59  SAILVEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAYKI 118

Query: 111 -ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
              ++ S + L+    +T ++   A++  SAN  + A  E I+G E  F  +M++K+K+ 
Sbjct: 119 SQDRSLSNVPLENGGSYTVKELYEAMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEF 178

Query: 170 GMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           GM+N  + N++GL               D+    +ARD AIL   L ++FP+      I 
Sbjct: 179 GMKNYKFVNSTGLTNHDLKGHHPEGTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIP 238

Query: 216 KFRYRN-----RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           K  ++N       +TN N +L         +DG+KTG T  +G     ++      +++V
Sbjct: 239 KKTFQNGGKYPIDMTNFNWMLKGLIKEYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISV 298

Query: 267 VMGMPTSQERDQKALELITSFL----------EKKTLKHQQTHR----KDNLSSTSLKKS 312
           V+   +   R  +  +L               ++  +K  +T R    KD       K++
Sbjct: 299 VIKANSHTARFDETKKLYDYGFANFEVKKVYGKESVVKGYETVRVANAKDKDVVVQTKQA 358

Query: 313 LMIKKLKRTYSQFKK 327
           +++   K     +KK
Sbjct: 359 ILLPIPKSNKDVYKK 373


>gi|159185835|ref|NP_356978.2| penicillin-binding protein dacf precursor [Agrobacterium
           tumefaciens str. C58]
 gi|159140969|gb|AAK89763.2| penicillin-binding protein dacf precursor [Agrobacterium
           tumefaciens str. C58]
          Length = 389

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/233 (34%), Positives = 131/233 (56%), Gaps = 1/233 (0%)

Query: 57  IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V+DV   ++   ++     YPASLTK+MT YI F  +++ K+   T++ +SK AA Q  
Sbjct: 55  MVVDVKTGKVISHQEAFRKWYPASLTKLMTAYIAFSQMKAGKISPQTEVVMSKKAADQPA 114

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           SK+Y K     T +  +  L+ +SAND++ A  E I G+   F   M+ +A+++GM +T 
Sbjct: 115 SKMYFKPGQKLTMDSALKLLLIKSANDIAVAIAETIGGTSDNFVAQMNAQAQRLGMSSTH 174

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           Y N +GL  K Q TTARD A+L +++++ FP+Y  YFS+       +   N N L+ +  
Sbjct: 175 YVNPNGLPGKGQYTTARDLALLALIIKREFPEYAHYFSLEGVTTGKKNYANFNMLVGRFE 234

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
             DG+KTG+   SGFN V S       ++ VV+G  +   R  ++ +L+   L
Sbjct: 235 GADGMKTGFICASGFNQVASAVRNGRSVITVVLGADSLAGRTDQSADLLQMGL 287


>gi|319409433|emb|CBI83082.1| Penicillin-binding protein [Bartonella schoenbuchensis R1]
          Length = 357

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 100/303 (33%), Positives = 161/303 (53%), Gaps = 13/303 (4%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL 93
           L LS I+   ++   A P  S   +D    ++    Q  E  YPASLTK+MT Y+IF  +
Sbjct: 8   LCLSFILSMTSTLALAYPFIS---VDAATGRILQHNQAFERWYPASLTKLMTTYVIFRAM 64

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            + ++     I +SK A+  +PS    +  +  T E  +   + +SAND++ A  E +SG
Sbjct: 65  STGEISPQKHITISKNASQASPSHSGYEAGSILTLETALSITLVKSANDLAIALSEAVSG 124

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S++ F   M+ +A+++GM  T + NASGL   +  TTARD A+L + +R+ FPQY  YFS
Sbjct: 125 SQEAFVQQMNVQAQRLGMFGTHFANASGLPHPDNYTTARDIALLAVQIRREFPQYAHYFS 184

Query: 214 IRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           I    + +  +I  N N L+N+ +  DG+KTG+T  SGFN+V S       I+AVV+G+ 
Sbjct: 185 IPAIDFGDGRKIKFNSNNLINRFYGTDGMKTGFTCASGFNLVASATRNKRTIIAVVLGLD 244

Query: 272 TSQERDQKALELITSFLE-----KKTLKHQQTHRKDNLSSTSLKKSLMIKKL--KRTYSQ 324
           T   R+ KA +L+ +        + TL   + +       T +++ +   ++  KR    
Sbjct: 245 TINAREGKAAQLLETGFSLQGSAQSTLATLKPYGTKMTQITDMEEQICDPEVVKKRIEDT 304

Query: 325 FKK 327
           F K
Sbjct: 305 FDK 307


>gi|163844056|ref|YP_001628460.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445]
 gi|163674779|gb|ABY38890.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445]
          Length = 370

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 94/312 (30%), Positives = 165/312 (52%), Gaps = 19/312 (6%)

Query: 33  KILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYII 89
           +I F ++    +A S   A P   SI +DV   ++   +QD  +  YPASLTKMMT Y+ 
Sbjct: 6   RIWFAAVAFSGIALSGAAANP---SIAVDVATGKV-YEQQDAFQRWYPASLTKMMTAYVT 61

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           F  LQS ++ L + + ++  A+ + PSK+  K  +  T +  +  ++ +SANDVS A  E
Sbjct: 62  FRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVAE 121

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            + G+E  F   M+ +A+++GM  + + N +GLHD N  TTARD A+L + LR+ FPQ+ 
Sbjct: 122 AVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRREFPQHA 181

Query: 210 KYFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            YF+          ++  N+N LL +    DG+KTG+   SGFN+  S       ++A+V
Sbjct: 182 HYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRTVLAIV 241

Query: 268 MGMPTSQERDQKALELITSFLEKK--------TLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
           +G    + R  +A +++T     +        TL+  QT   +   +  ++K++  ++  
Sbjct: 242 LGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQ--AVDMRKAICSEQAM 299

Query: 320 RTYSQFKKIDAK 331
                 ++++ +
Sbjct: 300 ADRWDGREVEGR 311


>gi|323136276|ref|ZP_08071358.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocystis sp. ATCC
           49242]
 gi|322398350|gb|EFY00870.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocystis sp. ATCC
           49242]
          Length = 393

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/283 (26%), Positives = 129/283 (45%), Gaps = 10/283 (3%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMM 84
           R +     +   S+   S  ++       ++I+ID   N +   K  D+   PAS  K++
Sbjct: 5   RYLIAAVFVAVSSLFSGSALAQAFQTSVPNAILIDAGTNTVLFEKGADDLVTPASTVKIL 64

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRS 139
           T  +IF  L   +L L     VS+ A          S ++LK  +  T E  +  L+  S
Sbjct: 65  TAEMIFRELTEGRLKLGDVFTVSEYAWRNGGAPAGGSAMFLKVNSQATVEDLLRGLLIDS 124

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND +    E ++GSE+ F + M+ +A ++G+  + + N  G    +Q  T R+ A L +
Sbjct: 125 GNDAALVLAEGVAGSEEAFVMRMNKRASELGLVKSRFGNPWGKASDDQKVTPREVAKLAL 184

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            + + +P +YKYF  ++F + N    N N LL      DG+KTG      F IV S   +
Sbjct: 185 HVIRTYPDFYKYFGEKEFTWNNIRQQNRNPLLTMSIGADGLKTGNIEKGDFGIVGSANQE 244

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFL----EKKTLKHQQT 298
              ++  V G  T++ER ++A +L+        EK   K  + 
Sbjct: 245 GRRLIVAVYGAKTAKERAEEARKLLQWGFRNFEEKDLFKAGEP 287


>gi|114705410|ref|ZP_01438318.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506]
 gi|114540195|gb|EAU43315.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506]
          Length = 467

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 83/291 (28%), Positives = 156/291 (53%), Gaps = 7/291 (2%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           K   +SIV+D+   ++       E RYPAS TK+MT Y+  + ++   +  +T + +++ 
Sbjct: 62  KTTLASIVVDLETGKVLSQSNATERRYPASTTKLMTAYLAMKAVEVGSMDWDTPVVMTRQ 121

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKK 168
           AA + PSKL +   +    ++ + AL+ +SANDV+TA G+ +  GS + F  +M+  A  
Sbjct: 122 AANEAPSKLDIPPGSIMRLDEAVRALLVKSANDVATAVGQTLGHGSSETFVAMMNRTAGL 181

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           IGM++T + NA GL  + Q ++A+D AIL + +R+ FP+Y  +F      +  +++ N N
Sbjct: 182 IGMRDTQFINAHGLPGEGQHSSAKDLAILAMAIREEFPEYKDWFGTEAIVFNGKLMNNGN 241

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           KLL +    +G+KTGY    GFN+V+++   +  ++AVV+G   + ER+  + EL  +  
Sbjct: 242 KLLGRYDGAEGMKTGYICAGGFNLVSAVTRDNRTLIAVVLGANGTIERETLSAELYETAF 301

Query: 289 EKKTLKHQQTHR-----KDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
           +     + +T +      D   +  +   +   + +   +  +  D +  S
Sbjct: 302 KADLDANYKTVKELPIVGDGKVTLDVSNYICSGEGRTARANDRVADRRDKS 352


>gi|238918925|ref|YP_002932439.1| D-alanyl-D-alanine carboxypeptidase DacD [Edwardsiella ictaluri
           93-146]
 gi|238868493|gb|ACR68204.1| D-alanyl-D-alanine carboxypeptidase DacD [Edwardsiella ictaluri
           93-146]
          Length = 387

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 122/244 (50%), Gaps = 9/244 (3%)

Query: 53  KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S +++D    Q+      D  R PASLTK+MT Y++   L   ++ LN ++ +   A 
Sbjct: 33  AASWVLMDAQTGQILAAGNPDARRNPASLTKLMTNYVVERALDQGRIGLNDRVSIGDDAW 92

Query: 112 T------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
                  +  S ++LK   + T    I  +I  S ND   A  +++SG +  F   M+  
Sbjct: 93  ATRNPLFKGSSLMFLKPGDHATVSDLIRGIIIDSGNDACVALSDYVSGDQADFVRQMNAY 152

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
              + +QNT ++   GL    Q ++ARD A+L   +  +   YY +++ +   +      
Sbjct: 153 VNALHLQNTHFETVHGLDAPGQYSSARDLALLARAIITHEQPYYHFYAEKSLSWNGVTQN 212

Query: 226 NHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY-KDDPIVAVVMGMPTSQERDQKALEL 283
           N N LL  +  ++DG+KTG+T ++GFN+V +    +   ++AVVMG  +S+ R+ +A +L
Sbjct: 213 NRNGLLWDQDLHVDGMKTGHTASAGFNLVATSVDARGQRLIAVVMGADSSRGREVQAKKL 272

Query: 284 ITSF 287
           +   
Sbjct: 273 LLWG 276


>gi|220927940|ref|YP_002504849.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           cellulolyticum H10]
 gi|219998268|gb|ACL74869.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           cellulolyticum H10]
          Length = 401

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 124/295 (42%), Gaps = 18/295 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNT 102
             ++       ++IV+DV   ++   K    R   AS TK+MT  +  E           
Sbjct: 48  AGNQAPRVSAGAAIVMDVQSGRVLYEKNAYKRSSIASTTKIMTAIVALENGSDG-----E 102

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + VSK AA+   S++ LK    +     + AL+ RS ND + A  E + GS + FA +M
Sbjct: 103 DVIVSKKAASIWGSRVGLKMGKIYKLGNLLNALMIRSGNDAAIAIAEHVGGSVEAFAEMM 162

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
           + KA +IG  NT +    GL      +T  D A++     KN  ++ K  S +   +   
Sbjct: 163 NRKAAEIGATNTNFVTPHGLDAPQHYSTPYDLALITQYALKN-KKFCKIVSTKSSTFEGN 221

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            I N N++L+     DG+KTGYT  +G  +VTS  +    I++VV+   T   R Q +  
Sbjct: 222 PINNTNEMLSLYPGADGVKTGYTGQAGRCLVTSATHSGWRIISVVLNCSTRSVRAQSSKI 281

Query: 283 LITSFLEKKTL-----KHQQTHRKD------NLSSTSLKKSLMIKKLKRTYSQFK 326
           L+        +     K  Q  +        N       K + I   K    + K
Sbjct: 282 LLDYAFGNYKIYEYLKKGGQISQVGIHKGLSNAVGICSDKDISIPLKKDEADRIK 336


>gi|126726756|ref|ZP_01742596.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodobacterales
           bacterium HTCC2150]
 gi|126704085|gb|EBA03178.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodobacterales
           bacterium HTCC2150]
          Length = 374

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/302 (28%), Positives = 148/302 (49%), Gaps = 5/302 (1%)

Query: 39  IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKK 97
           +I   + ++  A P  S+ VIDV+   +   K  + P  PAS++K+MTL ++FE L   +
Sbjct: 1   MIAAPLLAQNFATPARSAFVIDVSSGTVLLSKDADIPLPPASMSKLMTLNMLFEALVDGR 60

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           + L+    VS+ A     S +YL ++   TTE+ I  +I +S ND      E ++G E++
Sbjct: 61  VSLSDTWRVSQRAQDMGGSSMYLDKRDRPTTEELIQGIIVQSGNDACVVVAEGLAGGEEE 120

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           FA LM+ +A+ +GM N+ + NASG     Q  +  D   L + L   FPQ+Y YFS + F
Sbjct: 121 FAQLMTERARSLGMNNSTFGNASGWPHPLQKMSTHDLGTLAVRLITEFPQFYPYFSQKSF 180

Query: 218 RYRNRI---ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
            +  R+     N N LL      DG+KTG+T  +G+ +V S       +V VV G+ ++ 
Sbjct: 181 AFDGRVPDNHRNRNPLLALGIGADGLKTGHTNEAGYGLVGSAVQGKRRVVFVVSGLDSAS 240

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
            R  ++  +    L ++ ++       D ++   +    + K      +  + +     S
Sbjct: 241 LRASESERITNWAL-RQFIQKTIATPDDIITDAPVWMGEVTKVALVPAAPIELLLPVVGS 299

Query: 335 TQ 336
            +
Sbjct: 300 DK 301


>gi|126642471|ref|YP_001085455.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
           (precursor) [Acinetobacter baumannii ATCC 17978]
          Length = 346

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 80/283 (28%), Positives = 141/283 (49%), Gaps = 15/283 (5%)

Query: 59  IDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQN 114
           +D    Q+   K  +E   PAS+TKMMT YII + L   +L  N Q+ ++++A    + +
Sbjct: 1   MDYETGQILASKNENEKLAPASMTKMMTSYIIEQKLLKGELTENEQVRMNESAWCKGSSS 60

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S +Y+      T  + +  +I +S ND S A  E I+G+E  FA +M+ +AK+IGM NT
Sbjct: 61  ESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAGNEGTFAHMMNQEAKRIGMTNT 120

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            + N++G+  +   +TA+D A+L   + K+  +YY  +S ++F +      N N LL   
Sbjct: 121 QFINSTGMPAEGHYSTAKDMAVLAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNALLYTD 180

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL------ 288
            ++DG+KTG+T  +G+ + TS +     +++V+ G P+  ER  +   L+          
Sbjct: 181 PSVDGLKTGHTDEAGYCLTTSSKRGPMRLISVIFGTPSMSERADQTRALLAWGFANFETA 240

Query: 289 -----EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
                 +   K +    K+N     L ++  +   K      K
Sbjct: 241 NVQPANQVLAKAKVWFGKENEVQVGLAENFNVTMPKGKADGIK 283


>gi|170744322|ref|YP_001772977.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp.
           4-46]
 gi|168198596|gb|ACA20543.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp.
           4-46]
          Length = 402

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 73/274 (26%), Positives = 134/274 (48%), Gaps = 10/274 (3%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-- 112
           +I++D +   +   K  DEP  PAS+ K+MT+ +IF+ ++  +L+ +++ P+S+ A    
Sbjct: 41  AILLDADSGSVLYEKNADEPFSPASMAKLMTVEVIFDEMRKGRLNQDSEFPISENAWKHG 100

Query: 113 ---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S ++ +  +       +  +I +S ND + A  E I G+E  FA +M+  A++I
Sbjct: 101 GAGGGGSSMFAQLNSKVKLPDLLRGIIVQSGNDAAIAAAEAIGGTEDNFAQIMNRHAREI 160

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+  + ++N +G    +Q  TARD A L I L + +P  YK FS R+F +      N N 
Sbjct: 161 GLTRSTFRNPTGYSAPDQKVTARDLAKLAIHLIETYPDEYKLFSEREFTWNKIRQQNRNP 220

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           LL      DG+KTGY   SG+ +  S       ++ VV G+  + +R  ++ +L+     
Sbjct: 221 LLTMDLGADGLKTGYLEESGYGLTGSAVQNGQRLILVVSGLKKASDRAAESRKLLDWGFR 280

Query: 290 ----KKTLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
               ++     +T  + +       K  ++ K  
Sbjct: 281 AFEGRQVFAPGETVAEVDTYGGEKGKVALVAKKP 314


>gi|295103490|emb|CBL01034.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 410

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/254 (30%), Positives = 134/254 (52%), Gaps = 3/254 (1%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSK 96
           ++  +++       P  ++I+ID     +      D+    AS+TK+MTL + FE + + 
Sbjct: 44  AVQTLTVTPPQITLPCRAAILIDQTSGTVLYEMNADQTMPIASITKVMTLLLTFEAVHAG 103

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           +L ++T +PVS+ A     S+++L+    FT ++ + A+   SAND + A  E + GSE 
Sbjct: 104 RLTMDTAVPVSEHAYHMGGSQIWLEPGEQFTLDEMLKAICVSSANDAAVAVAELVGGSEP 163

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F   M+ +A ++GM++T ++NA GL  +  ++TARD AI+   +    P+   Y  I  
Sbjct: 164 AFVQQMNARAAELGMEHTTFRNACGLDTEGHLSTARDVAIMSRTILTTCPEVLHYTGIWT 223

Query: 217 FRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
              R     + N NKLL + + I G+KTG T  +G  I  S       ++AVV+G P+S+
Sbjct: 224 DTLRGGQTQLVNTNKLLRRYNGITGLKTGTTGGAGVCITASATRDGLNLIAVVLGAPSSK 283

Query: 275 ERDQKALELITSFL 288
           ER + A  L+    
Sbjct: 284 ERFEAATTLLDYGF 297


>gi|74316284|ref|YP_314024.1| serine-type D-ala-D-ala carboxypeptidase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74055779|gb|AAZ96219.1| serine-type D-ala-D-ala carboxypeptidase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 377

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/262 (28%), Positives = 134/262 (51%), Gaps = 4/262 (1%)

Query: 33  KILFLSIIMISMASELHAK---PKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYI 88
           K L+L++  +  AS + A       + +++D    +     Q + P  PASLT++MT+Y+
Sbjct: 8   KFLWLTLAWLLSASAIAAPTGIAARAWVIVDQTSGRELASHQPDLPLAPASLTQLMTVYV 67

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           +   ++   L L+ ++ V   AA  + ++++LK       +  + A++ +SA+D +    
Sbjct: 68  LLGDIRRNALRLDAEVRVPDAAAEADGARVFLKPGERVRVDTLLRAILVQSASDATVTLA 127

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
               GSE  F   M+ +A ++GM+ T + NA+GL     +++ARD A+LG  L +  P  
Sbjct: 128 TATDGSEAAFVERMNREAARLGMKRTHFANATGLAQPGHVSSARDLAVLGRALLREHPAQ 187

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              F+ ++F        N N+LL +   + G+K G    SG++ V S +  +   VAVV+
Sbjct: 188 QALFAQKEFTLDGLTYYNANRLLWRDGTVTGLKVGRNPESGYSAVASAQRGEQRRVAVVL 247

Query: 269 GMPTSQERDQKALELITSFLEK 290
           G  +  +R Q AL L+    EK
Sbjct: 248 GARSDAQRTQDALRLLNYGFEK 269


>gi|326204096|ref|ZP_08193957.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium papyrosolvens
           DSM 2782]
 gi|325985863|gb|EGD46698.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium papyrosolvens
           DSM 2782]
          Length = 401

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/297 (27%), Positives = 132/297 (44%), Gaps = 18/297 (6%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLN 101
           +  ++L      ++IV+D    ++   K    R   AS TK+MT  +  E  +      +
Sbjct: 47  ATGTQLPRVSAGAAIVMDAKSGRVLYEKNGYKRNSIASTTKIMTAIVAIENGKD-----D 101

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
             + VSK AA+   S++ LKE   +     + A++ RS ND + A  E I GS + FA +
Sbjct: 102 EDVIVSKRAASIGGSRVNLKEGKIYKLGNLLNAMMLRSGNDAAIAIAEHIGGSVEAFAEM 161

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           M+ KA +IG  NT +    GL D    +T  D A++     KN  ++ K  S +   +  
Sbjct: 162 MNRKAAQIGATNTNFVTPHGLDDPQHYSTPFDLAMITQYALKN-EKFCKIVSTKSSSFEG 220

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
             I N N++L+     DG+KTGYT  +G  +VTS  +    +++VV+   T   R Q + 
Sbjct: 221 NPINNTNEMLSLYPGADGVKTGYTGQAGRCLVTSATHNGWKVISVVLNCSTRSVRAQNSK 280

Query: 282 ELITSFLEKKT----LKHQQ------THRK-DNLSSTSLKKSLMIKKLKRTYSQFKK 327
            L+       +    LK  Q       H+  +N       K + I   K    + K 
Sbjct: 281 ILLDYAFGNYSTYDYLKQGQQISEIGIHKGLNNSVGLCSDKDVSIPLKKDEADRIKA 337


>gi|91205746|ref|YP_538101.1| penicillin-binding protein dacF precursor [Rickettsia bellii
           RML369-C]
 gi|157827127|ref|YP_001496191.1| penicillin-binding protein dacF precursor [Rickettsia bellii OSU
           85-389]
 gi|91069290|gb|ABE05012.1| Penicillin-binding protein dacF precursor [Rickettsia bellii
           RML369-C]
 gi|157802431|gb|ABV79154.1| Penicillin-binding protein dacF precursor [Rickettsia bellii OSU
           85-389]
          Length = 307

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 105/285 (36%), Positives = 160/285 (56%), Gaps = 10/285 (3%)

Query: 29  QLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQDEPR-YPA 78
           +++   +F+ I +++  SE             P  +S+VID    ++      + R YPA
Sbjct: 4   KILLPYIFVIISLLTQVSEAKKAVKNSSKVPIPVQTSLVIDAKTGKVLHAHNSQIRIYPA 63

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           SLTK+MTLY++FE ++  KL L+ ++ VS  AA   P K+ L+     TT + I  LI +
Sbjct: 64  SLTKLMTLYVMFELIELGKLSLDKKLLVSAKAAKMPPCKIGLRAGDTITTREAINMLIVK 123

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           SAND +    E I  SEK FA LM+ KAK++GM+NT +KNASG HD  Q TTARD A L 
Sbjct: 124 SANDAAVTVAENIRLSEKDFAHLMNIKAKQLGMKNTYFKNASGWHDPLQQTTARDMAKLT 183

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
           + +++ FP+YY  FS   F +R  +I  HNK+       +G+KTG+   +G+N+VT+   
Sbjct: 184 LAIKQKFPKYYPLFSKTSFVFRGNVINGHNKITKNYAGAEGMKTGFHTPAGYNLVTTASR 243

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
               ++AVV G  ++  RDQK + L+       + K + T   +N
Sbjct: 244 NGKSLIAVVTGGRSAGSRDQKMIGLLDQHFNVASAKPKVTLASNN 288


>gi|330814086|ref|YP_004358325.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487181|gb|AEA81586.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 379

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 94/313 (30%), Positives = 157/313 (50%), Gaps = 20/313 (6%)

Query: 34  ILFLSIIMI-SMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFE 91
           IL +S  +I +  +         +I++DVN  Q+   K  +E   PAS+TK+MT  I F+
Sbjct: 6   ILLISFFLIQAYNANALITSAKQAILMDVNSGQVLFKKNENEKISPASITKVMTSIIAFD 65

Query: 92  YLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            ++S +L LN +  VS  A     Q  S +++      T    +  +I  S ND   A  
Sbjct: 66  LIKSGELKLNEKFLVSNKAWRMAKQGYSSMFIVPNDRITVLNLLKGIIIASGNDACIALA 125

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E I+GSE  FA +M++KAK IGM NT + N+SG++ ++  +T  D +++ + L K FP+ 
Sbjct: 126 EGIAGSEAAFASMMNDKAKSIGMTNTNFSNSSGIYSEDNYSTVSDISLMSVYLIKEFPEL 185

Query: 209 YKYFSIRKFRY-----RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           YK ++ R F +          +N N LL K   +DGIKTG+  +SG+++  ++   +  I
Sbjct: 186 YKMYAERTFTWDRTGGNPITQSNRNTLLYKNSKVDGIKTGHLNDSGYSLAATMLVNNRRI 245

Query: 264 VAVVMGMPTSQERDQKALELITSFL----------EKKTLKHQQTHRKDNLSSTSLKKSL 313
           ++VV G  + +ER +++L+L+   +          E         + K +     L+K L
Sbjct: 246 LSVVSGTNSQKERAKESLKLLNHAIITTELLLVKKENPLFSINTWNGKKSSIKLELEKDL 305

Query: 314 MIKKLKRTYSQFK 326
            I   KR     K
Sbjct: 306 YITYSKRRSRDIK 318


>gi|317122120|ref|YP_004102123.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           marianensis DSM 12885]
 gi|315592100|gb|ADU51396.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           marianensis DSM 12885]
          Length = 578

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 65/256 (25%), Positives = 117/256 (45%), Gaps = 16/256 (6%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
            +      +   ++I++D    Q+   +  D     AS TK+MT  +  E     +  L 
Sbjct: 174 PVPDRPPPQDARAAILVDAATGQVLYERNADATMPMASTTKIMTALLAIE-----RGDLR 228

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
             I  S+ A     S LYL      T E+ +  L+ +S ND + A  E ++GS + F   
Sbjct: 229 QVITTSERAFGVEGSSLYLALGEQRTLEELLYGLMLQSGNDAAVAIAEGLAGSVETFVDW 288

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR- 220
           M+ +A+++G+++T + +  GL  ++  T+ARD A L  +   N P + +    R++R   
Sbjct: 289 MNRRAQELGLEHTRFADPHGLASRDHYTSARDLATLARVAMAN-PTFRRIVGTREYRMPW 347

Query: 221 -----NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM-PTSQ 274
                 R++ NHN+ L +     G+K GYT  +   +V S +     ++ V++G  PT  
Sbjct: 348 PEKQSERVLYNHNRFLWRYEGATGVKNGYTSAARGALVASAQRDGVELIGVLLGAHPTGM 407

Query: 275 ERDQKALELITSFLEK 290
            RD     L+     +
Sbjct: 408 YRD--MAALMDWGFAR 421


>gi|171704678|gb|ACB54658.1| D-ala-D-ala carboxypeptidase [Paenibacillus polymyxa]
          Length = 417

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/268 (29%), Positives = 139/268 (51%), Gaps = 27/268 (10%)

Query: 55  SSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+I+ +  Q+      DEP  PAS+TKMMT YI+ E ++  KL    ++ V++ A+  
Sbjct: 43  SAILIEPSTGQVLLSMNPDEPLPPASMTKMMTEYIVAEQVKQGKLKWTDKVTVNENASKS 102

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L +    T E+  +A+   SAND + A  E +SG+E+ F  LM+  A+K+GM+N
Sbjct: 103 IGSRIFLAQGDQHTVEELYIAMAVGSANDATVALAERVSGTEQDFVKLMNETAQKMGMKN 162

Query: 174 TIYKNASGLH------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           T + N++GL             D+  + TARD A L   + K+ P Y ++ +I+ +++R 
Sbjct: 163 TYFINSTGLDRKDMPTGFQPDTDRETVMTARDAATLAGYIIKDHPDYTRFTTIQSYKFRP 222

Query: 222 R---IITNHNKLLNK-----------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
                I N+N +L +              +DG+KTG+T N+G     +       +++VV
Sbjct: 223 TDKAPIINYNWMLEENKNITNFRKFAYPGLDGMKTGHTNNAGNCFTGTAERNGMRLISVV 282

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKH 295
           MG  +   R  +  +++    +   +K 
Sbjct: 283 MGADSDAHRFTETAKVLNYGFDNFEVKQ 310


>gi|90420271|ref|ZP_01228179.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335605|gb|EAS49355.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 455

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 83/240 (34%), Positives = 141/240 (58%), Gaps = 1/240 (0%)

Query: 52  PKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  +SIV+DV   ++   +   E RYPAS TK+MT Y+    L+  +L L++ + V++ +
Sbjct: 24  PPMASIVVDVATGKVLSQQHATERRYPASTTKLMTAYLALRALRESRLSLDSPVIVTRRS 83

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A + PSK+  K  +    +  +  ++ +SAND++ A GE + GS ++F  +M++ A ++G
Sbjct: 84  AAEAPSKMGFKPGSVIRLDFALRMMLVKSANDIAYAIGETVGGSMEEFVAMMNDAAAQLG 143

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           MQ+T + NA+GL  + Q ++A+D AILG+ +R+ FP +  YF          I+ N NKL
Sbjct: 144 MQDTRFINANGLPGEGQHSSAKDLAILGVAIRREFPAFADYFGTEAISNGTAILKNGNKL 203

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L +    DG+KTGY   SGFN+V+S       +VAVV+G   +  R++ + E++ +    
Sbjct: 204 LGRFDGADGMKTGYICASGFNLVSSATRNGRTLVAVVIGANGTIPRERLSAEILEAGFAT 263


>gi|239906564|ref|YP_002953305.1| putative D-alanyl-D-alanine carboxypeptidase [Desulfovibrio
           magneticus RS-1]
 gi|239796430|dbj|BAH75419.1| putative D-alanyl-D-alanine carboxypeptidase [Desulfovibrio
           magneticus RS-1]
          Length = 364

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 84/289 (29%), Positives = 144/289 (49%), Gaps = 9/289 (3%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V +    +    +  D P  PASLTK+MT+Y++F+ + S K     +I VS+ A   
Sbjct: 38  SALVTEYGSGKTLYSQDADRPIPPASLTKVMTMYVVFDLVASGKASFADRIKVSRGADRT 97

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S + L+     T ++ +  +   S ND   A  E   G    F  LM+ KA+++GM  
Sbjct: 98  GGSTMGLRAGEIVTLDELMRGMAVASGNDACIAVAEHFGG-VPTFVGLMNRKARELGMTG 156

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           T +KN +GL    Q TTARD   L +   +++PQ  +Y S  +  +   +  N N+LL  
Sbjct: 157 TTFKNPNGLPAAGQYTTARDLTKLAVSYLRHYPQALRYHSTTEINHNGAVHGNTNRLLAS 216

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE--KK 291
               DGIKTGY   SG+NI+ + +  D  ++AVV+G  T Q R+++A+ ++ +      +
Sbjct: 217 YDGADGIKTGYVDASGYNIIATAKRGDTRVIAVVLGGRTKQVRNREAVRILDASFSGAVQ 276

Query: 292 TLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK-----KIDAKAHST 335
           T+       +    + SL K    K+  +     K     K++A++ ++
Sbjct: 277 TMVAACDMPEPEQPTKSLSKRASAKRHAKAMQVAKADRHAKVNARSGAS 325


>gi|169333947|ref|ZP_02861140.1| hypothetical protein ANASTE_00333 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259512|gb|EDS73478.1| hypothetical protein ANASTE_00333 [Anaerofustis stercorihominis DSM
           17244]
          Length = 392

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 88/328 (26%), Positives = 169/328 (51%), Gaps = 24/328 (7%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKY-----------SSIVIDVNKNQMTGFKQ-DEPRY 76
           +++  IL  S+I  S +S + AK +            S +++DV   ++   K  DE   
Sbjct: 4   KIVSLILSFSLIFTS-SSFVFAKEESKNEVDMDIQSKSVVLMDVGTGKVLYEKNKDEKLP 62

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS+TK+MT+ +I E + +K ++++  + +S  A+    S+L+++E    + ++ + A+I
Sbjct: 63  LASVTKVMTILLILEAVNNKTINMSDMVTISDYASKMGGSQLFMEEGEMRSVDELLNAII 122

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             SAND   A GEF+ GS +KF ++M+++AK++GM+N+ + N++GL   +  ++A D A+
Sbjct: 123 IESANDACAAMGEFVGGSIEKFVLMMNDRAKELGMKNSHFVNSNGLPADDHYSSAYDIAL 182

Query: 197 LGILLRKNFPQYYKYFSIRKFRY-------RNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
           +   + K +P  +K  S  +          + R ++N NKLL     +DG+KTGYT ++G
Sbjct: 183 MTKEVCK-YPDIFKISSTWQKTIKIGKKNDKERTLSNTNKLLRMNDKVDGLKTGYTADAG 241

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN-LSSTS 308
             I  + +  D  ++AV++  P S+ R  +A +L+       T K +    KD  ++   
Sbjct: 242 HCISATGKEGDLRLIAVILHAPDSKTRFAEANKLLNYGF--STYKAENVVEKDKAVADVE 299

Query: 309 LKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
           + K    K           +  K  + +
Sbjct: 300 VNKGNKDKVSAVAKDNISTLMNKNENKE 327


>gi|291522275|emb|CBK80568.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus catus GD/7]
          Length = 430

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 74/255 (29%), Positives = 125/255 (49%), Gaps = 12/255 (4%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++++++     +   K  D    PAS+TK+MTL +I++ L + K+ L  ++  S  A + 
Sbjct: 73  AAVLMEAGTGTVIYEKNQDVRVSPASITKIMTLLLIYDALYNGKIQLTDEVVTSARAKSM 132

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+E    T E  I  ++  S ND S A  E++SGSE+ F   M+ KA  +GM  
Sbjct: 133 GGSQVFLEEGEKQTVETLIKCIVIASGNDASVAMAEYVSGSEEAFVGEMNQKAADLGMNG 192

Query: 174 TIYKNASGLHDKN-QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--------I 224
           T + +  GL D N   TTA+D AI+   L  N+P   +Y +I      +          +
Sbjct: 193 THFVDCCGLTDSNDHYTTAKDVAIMARALITNYPDISQYATIWMENITHVTAKGSSEFGL 252

Query: 225 TNHNKLLNKMHN--IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           +N NKLL   +N  + G+KTG T  +G+    +       ++AVVM  P  + R  +A +
Sbjct: 253 SNTNKLLKMANNFEVTGLKTGSTAKAGYCFCGTAVKDGLSLIAVVMDAPDYKIRFSEAQQ 312

Query: 283 LITSFLEKKTLKHQQ 297
           L+       +     
Sbjct: 313 LLNYGFANCSAYRDD 327


>gi|315646383|ref|ZP_07899501.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           vortex V453]
 gi|315278026|gb|EFU41346.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           vortex V453]
          Length = 394

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 74/286 (25%), Positives = 130/286 (45%), Gaps = 20/286 (6%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHA-------KPKYSSIVIDVNKNQMTGFKQ-DEPRY 76
           ++   L+  ++ +  +++++A  ++A           ++ +IDV   +M   K  DE   
Sbjct: 6   KKGKSLLSMLIAVCCLLVTIAPVVYADHEKGPANHAQAAALIDVTSGRMLYSKNGDERLR 65

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            ASLTK+MT  +  E+ +     L+ ++ +SK A  +  S ++LK     T E  +  L+
Sbjct: 66  IASLTKIMTAIVAIEHGK-----LDDRVKISKNAFAKEGSSIFLKLGEEMTLENLLFGLM 120

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            RS ND +TA  E + G+E+ F +LM+ KA ++GM N+ + N  GL      ++A D A 
Sbjct: 121 LRSGNDAATAIAEHVGGTEEGFVMLMNEKAAQLGMTNSHFMNPHGLDHDEHYSSANDMAK 180

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRN------RIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           L     KN P + +       +  N          N NK+L      DG+KTGYT+ +  
Sbjct: 181 LTAYALKN-PVFSEIVKTPTKKAPNPNESWDYKWDNKNKMLRFYEGADGVKTGYTKKAFR 239

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQ 296
            +V+S       I AV +            L+   +    K +  +
Sbjct: 240 CLVSSATRNGQQIAAVTLNDGNDWNDHSNMLDYGFAHFPLKKVTEK 285


>gi|83311331|ref|YP_421595.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum
           AMB-1]
 gi|82946172|dbj|BAE51036.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum
           AMB-1]
          Length = 417

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 76/258 (29%), Positives = 132/258 (51%), Gaps = 1/258 (0%)

Query: 57  IVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           + +D+    +    +   P +PASLTKMMT Y+ F  +++ K+  +  I VS+ AA+Q  
Sbjct: 34  LAVDLGSGAVIAESRGGAPHHPASLTKMMTAYVAFAAIKAGKVSQDDVITVSERAASQGG 93

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           + L L+     T    + A+I RSAND + A  E + GSE  FA  M+ +A ++GM ++ 
Sbjct: 94  ASLDLRPGERITLGAALKAMIVRSANDAAVAVAEHVGGSESAFASRMTEEAARLGMTSSS 153

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           ++NASG+     +++ RD A+L + + ++FP +   FS R   ++ R++   N  L    
Sbjct: 154 FRNASGMTAGGHVSSPRDMAVLAMAIERDFPTFRPLFSSRDTTWKGRVLPTVNGFLGAYA 213

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKH 295
             +G+KTG+T ++G+N+V          +AVVMG  +S +R      L+   L+      
Sbjct: 214 GAEGMKTGFTCSAGYNLVAIAHRGGRRALAVVMGAESSAQRLGAIRRLMDQALQATPTAG 273

Query: 296 QQTHRKDNLSSTSLKKSL 313
           +      N        S+
Sbjct: 274 RPLAGLSNGGGAPPDHSM 291


>gi|296133697|ref|YP_003640944.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola sp. JR]
 gi|296032275|gb|ADG83043.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola potens JR]
          Length = 413

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 80/311 (25%), Positives = 149/311 (47%), Gaps = 23/311 (7%)

Query: 23  YIQRNIQLMGKILFLSIIM--ISMASELHAKPKY---SSIVIDVNKNQMTGFKQDEPR-Y 76
           + +R+I ++  + F+  ++    +A     +P     + ++ID    Q+   K  + R  
Sbjct: 3   FGKRSISILLVVFFVITVVGGPVIAPVYAQEPGIVGKAGVLIDARSGQVLYAKNPDLRLP 62

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS TK++T+ I  E       ++N ++ VSK A TQ  S +YL      T E  +  ++
Sbjct: 63  PASTTKILTVAIALEEG-----NVNDKVTVSKNAVTQEGSSIYLTAGETLTLEDLLYGVL 117

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A  E I+GS   F  LM+ KAK+ G  N+ + N +GL +    TTARD A+
Sbjct: 118 LSSGNDAAVAVAEHIAGSVPAFVKLMNKKAKEWGATNSNFCNPNGLPNDEHYTTARDLAM 177

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRN------RIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           +     +  P + +  + +    +         + NHNKLL +    +GIKTGYTR +  
Sbjct: 178 IAKHAME-LPLFREMAATKVKEIKRADPANFFRLINHNKLLWRYEGANGIKTGYTRVAQQ 236

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE----KKTLKHQQTHRKDNLSS 306
            +V+S +  D   +AVV+G   +      ++ L+    +     K ++  +  ++ ++  
Sbjct: 237 CLVSSAKRGDQEFIAVVLGSVGNNI-WTDSMALLDYGFKNFRTTKLVEKGKFIQEISVKD 295

Query: 307 TSLKKSLMIKK 317
            + K  ++ ++
Sbjct: 296 GTGKVRVVTER 306


>gi|300854313|ref|YP_003779297.1| D-alanyl-D-alanine carboxypeptidase [Clostridium ljungdahlii DSM
           13528]
 gi|300434428|gb|ADK14195.1| D-alanyl-D-alanine carboxypeptidase [Clostridium ljungdahlii DSM
           13528]
          Length = 435

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 81/334 (24%), Positives = 153/334 (45%), Gaps = 27/334 (8%)

Query: 28  IQLMGKILFLSIIMISMASELHAKP-------------------KYSSIVIDVNKNQMTG 68
            +++  IL L  I +     ++A+P                     S+++++    ++  
Sbjct: 40  FKIVSNILILFFITVLWLPVVNAEPLSESNKKEMNSTESGLNINARSALLMEPASGKVIF 99

Query: 69  FKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
            K   E   PAS+TK+MT+ +  E + S ++ L+ ++ VS+ A     S + L      +
Sbjct: 100 EKSSHEKLEPASVTKIMTMLLTMEAVDSGRISLSDKVTVSENAKKMGGSSMLLDTGEVRS 159

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
            E  I  +   S ND + A  E++ GSE +F  LM+ +A ++GM++T +KN +GL +   
Sbjct: 160 VEDLIKGIGIASGNDAAVAMAEYLGGSEDQFVQLMNKRAAELGMKDTSFKNCTGLSEDGH 219

Query: 188 ITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKT 242
           +TTA D A++   L K   +  KY      +I + R     + NHNKL+      DG+KT
Sbjct: 220 LTTAYDIALMSRELLK-HTRILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKT 278

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKD 302
           G+T ++ + I  +       ++AV+MG PT + R++ A  ++     K         +  
Sbjct: 279 GFTSSAKYCISATATRDGARMLAVIMGSPTYKVRNKDASMMMNYGFSKY-FGKNILKKGA 337

Query: 303 NLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
           ++    L K+     + +     K +  K   ++
Sbjct: 338 DVEKIPLNKAGDRFFIAKASEDLKVVVEKGKESK 371


>gi|303247169|ref|ZP_07333443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio
           fructosovorans JJ]
 gi|302491328|gb|EFL51216.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio
           fructosovorans JJ]
          Length = 366

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 75/269 (27%), Positives = 138/269 (51%), Gaps = 11/269 (4%)

Query: 31  MGKILFLSIIMISMASELHAKPKY---------SSIVIDVNKNQMTGFKQDEPR-YPASL 80
           M +I+FL I++  +  +     K+         +++V D    ++   +  + R  PAS+
Sbjct: 1   MRRIMFLLIVLCLIGPKTAFPAKHHSSGKLAVKAALVADYGTGKIFYSQDPDRRIAPASV 60

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           TK+MT+Y++F+ + S +   + ++ VS+ A     S + L+     T ++ +  +   S 
Sbjct: 61  TKVMTMYLVFDMVASGQASFSDKVKVSRRADATGGSTMNLRAGETVTLDELMRGMAVASG 120

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND + A  E   G    +   M+ KA+++GM  T +K  +GL    Q+TTARD   L + 
Sbjct: 121 NDAAVAVAEHFGG-VPAWVKRMNAKARQLGMTRTTFKTPNGLPAPGQLTTARDLMKLAVS 179

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
             +++PQ  +Y S     +   +  N N+LL     +DGIKTG+   SGFNI+ + +   
Sbjct: 180 YLRHYPQALRYHSTTTINHCGAVHANTNRLLGVCEGMDGIKTGFVNASGFNIIATAKRGK 239

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLE 289
             I+AVV+G  +SQ R+++   ++ +  E
Sbjct: 240 TRIIAVVLGGRSSQVRNRETERILDASFE 268


>gi|150016747|ref|YP_001309001.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903212|gb|ABR34045.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 396

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 73/245 (29%), Positives = 129/245 (52%), Gaps = 7/245 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+++++    ++   K  DE   PAS+TK+MT+ I  E + S K+ L+ ++  S+ A 
Sbjct: 45  ARSALLMEPMSGKILYEKNADEKFAPASVTKIMTMLITMEGVDSGKIKLDDKVTCSENAK 104

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S + L      T E+ +  +   S ND + A  E++ G+E++F  +M+ +A+++GM
Sbjct: 105 KMGGSTMLLDTGEIRTVEELLKGVAIASGNDAAVALAEYLGGTEQEFVNMMNKRAQELGM 164

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITN 226
            NT +KN +GL     ++TA+D AI+   L K  P+  KY      +I + R     + N
Sbjct: 165 VNTTFKNCNGLPADGHMSTAKDIAIMSKELLK-HPKVLKYTGTYMDNISEGRKSPIELVN 223

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           HNKL+      DG+KTG+T  + + I  +       +++V+MG PT + R++ A  L+  
Sbjct: 224 HNKLVRFFEGCDGLKTGFTDEAKYCISATATRNGVRMLSVIMGAPTYKIRNRDAGVLLNY 283

Query: 287 FLEKK 291
              K 
Sbjct: 284 GFSKY 288


>gi|302386799|ref|YP_003822621.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           saccharolyticum WM1]
 gi|302197427|gb|ADL04998.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           saccharolyticum WM1]
          Length = 411

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 76/265 (28%), Positives = 131/265 (49%), Gaps = 12/265 (4%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A    A    S+++++ +  Q+   K  DE R PAS+TK+MTL +IF+ L S K+ L  +
Sbjct: 47  AEGGPALQSPSAVLMEASTGQIIYEKNADEKRSPASITKIMTLILIFDALDSGKIKLTDE 106

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           +  S  A +   S+++L+E    T +  I  ++  S ND S A  E+I+G+E +F  +M+
Sbjct: 107 VVTSAHAKSMGGSQVFLEEGEVQTVDTLIKCIVIASGNDASVAMAEYIAGTEDEFVKMMN 166

Query: 164 NKAKKIGMQNTIYKNASGLHDKN-QITTARDQAILGILLRKNFPQYYKYFSIRKFRY--- 219
            +A  +GM NT +++  GL +    +TTARD A++   L   +PQ + Y +I        
Sbjct: 167 ERAAGLGMTNTHFEDCCGLTESGTHVTTARDIALMSRELINKYPQIHNYSTIWMENITHV 226

Query: 220 -----RNRIITNHNKLLNK--MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
                +   ++N NKLL      N+ G+KTG T  + + +  +       ++A +M  P 
Sbjct: 227 TKQGTKEFGLSNTNKLLKMATNFNVTGLKTGSTSVAKYCLSATAEKDGVRLIASIMAAPD 286

Query: 273 SQERDQKALELITSFLEKKTLKHQQ 297
            + R   A  L+        L   +
Sbjct: 287 YKIRFADAQTLLNFGYANCKLYEDK 311


>gi|121602162|ref|YP_988381.1| D-alanyl-D-alanine carboxypeptidase family protein [Bartonella
           bacilliformis KC583]
 gi|120614339|gb|ABM44940.1| D-alanyl-D-alanine carboxypeptidase family protein [Bartonella
           bacilliformis KC583]
          Length = 362

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 101/292 (34%), Positives = 155/292 (53%), Gaps = 11/292 (3%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL 93
            FL +++  M+    A P  S   +D+   ++    Q  E  YPASLTK+M  YI+F  +
Sbjct: 8   FFLFLVLSMMSRLALAHPFIS---VDLANGRILEHNQAFERWYPASLTKLMMAYIVFRAM 64

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            + ++  NT I +SK AA   P +   K     T +  +   + +SAND++ A  E I+G
Sbjct: 65  STGEISPNTSITISKAAAQAPPHRSSYKTGYTITLDAALSITLVKSANDLAIAISEAIAG 124

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S+K F   M+  A+++GM  T + NASGL D N  +TARD A+L + +R+ FPQY  YFS
Sbjct: 125 SQKAFVKQMNAHAQRLGMFGTHFANASGLPDLNNYSTARDIALLAVQIRREFPQYTHYFS 184

Query: 214 IRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           I    + +  +I  N NKL+ +   IDG+KTG+   SGFNIV S    +  I+AV++G  
Sbjct: 185 IPAIDFGDNQKIQYNSNKLIGRFDGIDGMKTGFICASGFNIVASATRNNRTIIAVILGAE 244

Query: 272 TSQERDQKALELITSFLEKK-----TLKHQQTHRKDNLSSTSLKKSLMIKKL 318
              ER+ KA EL+     KK     TL   + +       T +++ +   + 
Sbjct: 245 NIDEREAKAAELLHEGFTKKGSPTSTLATLEPYGTKITQITDMRQQICTPEA 296


>gi|254693780|ref|ZP_05155608.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein [Brucella
           abortus bv. 3 str. Tulya]
          Length = 361

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 95/218 (43%), Positives = 143/218 (65%), Gaps = 1/218 (0%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
                 PASL KMMTLY+ FE L++ +LH +  +P+SK AA++   KL+LK     +T  
Sbjct: 7   ASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRD 66

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-NQIT 189
            +  +I  SAND +T  GE+++GSE  FA LM+ +A++IGM++TI+ N SGL    +Q+T
Sbjct: 67  AVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLT 126

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
           TARD A+LG+ LR++FP+ Y  FS R F +R R+   HN L+ +   +DGIKTGYT  SG
Sbjct: 127 TARDMAVLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSG 186

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           +N+V+S    +  +V VV+G  ++ +RD +  +L+T F
Sbjct: 187 YNLVSSAYINNRHLVGVVLGAGSAGQRDGQMAKLLTRF 224


>gi|220926670|ref|YP_002501972.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Methylobacterium nodulans ORS 2060]
 gi|219951277|gb|ACL61669.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Methylobacterium nodulans ORS 2060]
          Length = 403

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 77/274 (28%), Positives = 140/274 (51%), Gaps = 10/274 (3%)

Query: 56  SIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ- 113
           +I++D +   +   K  DEP  PAS+ K+MT+ +IF+ ++  +L+ +++ P+S+ A  + 
Sbjct: 40  AILVDADSGSVLYEKAADEPFSPASMAKLMTVEVIFDEMRKGRLNQDSEFPISENAWRRG 99

Query: 114 ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S ++ +  +       +  LI +S ND + A  E I G+E  FA +M+ +A+++
Sbjct: 100 GAGGGGSSMFAQLNSKVKLPDLLRGLIVQSGNDAAIAAAEAIGGTEDNFAQIMNRRAREL 159

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+  + ++NA+G    +Q  TARD A L I L + +P+ YK F+ R+F +      N N 
Sbjct: 160 GLTRSTFRNATGYSAPDQKVTARDLAKLAIHLIETYPEEYKLFAEREFTWNKIRQQNRNP 219

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           LL      DG+KTGY   SG+ +  S       +V VV G+ T++ER  +A +L+     
Sbjct: 220 LLAMDIGADGLKTGYLEESGYGLTGSAVQNGQRLVMVVSGLKTARERAAEARKLLDWGFR 279

Query: 290 ----KKTLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
               ++     +T  + +       K  ++ K  
Sbjct: 280 AFEARQVFAPGETVAEADTYGGEKGKVALVAKKP 313


>gi|266624787|ref|ZP_06117722.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
 gi|288863335|gb|EFC95633.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
          Length = 410

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 74/265 (27%), Positives = 132/265 (49%), Gaps = 15/265 (5%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
              + A    S+++++ +  Q+   K  D  R PAS+TK+MTL +IF+ L S K+ +  +
Sbjct: 49  GPSIQAP---SALLMEASTGQVIYEKDADTKRSPASITKIMTLILIFDALDSGKIKMTDE 105

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           +  S  A +   S+++L+E    T E  I  ++  S ND S A  E+I+G+E++F  +M+
Sbjct: 106 VVTSAHAKSMGGSQVFLEEGETQTVETMIKCIVVASGNDASVAMAEYIAGTEEEFVKMMN 165

Query: 164 NKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY--- 219
            +A  +GM NT +++  GL +  + +TTARD A++   L   +PQ + Y +I        
Sbjct: 166 ERAAGLGMTNTHFEDCCGLTESPDHVTTARDIALMSRELINKYPQIHNYSTIWMENITHV 225

Query: 220 -----RNRIITNHNKLLNKMHN--IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
                +   ++N NKLL    N  + G+KTG T  + + +  +       ++A +M  P 
Sbjct: 226 TKQGTKEFGLSNTNKLLKMATNFQVTGLKTGSTSLAKYCLSATAEKDGVRLIASIMAAPD 285

Query: 273 SQERDQKALELITSFLEKKTLKHQQ 297
            + R   A  L+        L   +
Sbjct: 286 YKARFADAQTLLNYGYANCRLYEDK 310


>gi|153009406|ref|YP_001370621.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi
           ATCC 49188]
 gi|151561294|gb|ABS14792.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi
           ATCC 49188]
          Length = 398

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 74/267 (27%), Positives = 136/267 (50%), Gaps = 9/267 (3%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDE-PRYPASLTKMMTL 86
           +G  L +++ + S+A+ + A     +   +++D     +   K    P  PASL K+MT 
Sbjct: 16  VGVSLAVAVPVASLAAPVEAAFVTKAPQVLLVDDRSGTVLLSKNANVPIPPASLVKLMTA 75

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRSAN 141
            ++FE L+     L T   VS+ A          S ++ + K+  T    +  +I +SAN
Sbjct: 76  EVVFEALEQGATTLGTPYTVSENAWRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSAN 135

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D +    E ++GSE+ FA  M+++AK++G+  + + N++GL  + Q+ + +D   L   +
Sbjct: 136 DGAIVLAEGLAGSEQAFADRMNDRAKELGLIGSKFVNSTGLPAEGQVVSLQDLVRLARHI 195

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           R   P+YYKY++   F + N +  N N LL      DG+ TG+T  SGF +V S      
Sbjct: 196 RTAHPEYYKYYAQPAFTWNNIMQRNRNPLLRLDVGADGMGTGFTEASGFALVGSAEQNGR 255

Query: 262 PIVAVVMGMPTSQERDQKALELITSFL 288
            +   + G+ + +ER+++A  L+   +
Sbjct: 256 RLYLAMSGLASIKEREEEAKRLLQWGM 282


>gi|144901274|emb|CAM78138.1| Predicted peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 425

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 80/234 (34%), Positives = 128/234 (54%), Gaps = 1/234 (0%)

Query: 56  SIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           SIV+D     +    Q  +PR+PASLTKMMTLY+ F+ L   K  LN  + VS+ AA Q 
Sbjct: 50  SIVVDATSGAVLEQDQAGQPRHPASLTKMMTLYVAFQALSEGKTSLNATLTVSERAAGQG 109

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S L LK          + +L+ RSAND + A  E ++G+E  FA  M+ +A+++GM  T
Sbjct: 110 GSVLGLKTGKTIALADALKSLVVRSANDAAVAIAEHVAGTEDSFAQRMTEQARRLGMTAT 169

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            ++NA+GL     +TTARD A+L + L+++FPQ++  F+    R+ +  +   N  +   
Sbjct: 170 SFRNATGLTAPGHLTTARDMAVLAMALKRDFPQHWPLFATTSMRWGSSQLPTVNGFVTSY 229

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
              +G+KTG+T  +G+N+  +        +AV+MG    ++R      L+    
Sbjct: 230 PGAEGLKTGFTCPAGYNLAAAASRNGRSAIAVIMGAAAKEQRLALTTSLLNKAF 283


>gi|153953878|ref|YP_001394643.1| DacA2 [Clostridium kluyveri DSM 555]
 gi|219854493|ref|YP_002471615.1| hypothetical protein CKR_1150 [Clostridium kluyveri NBRC 12016]
 gi|146346759|gb|EDK33295.1| DacA2 [Clostridium kluyveri DSM 555]
 gi|219568217|dbj|BAH06201.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 403

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 81/266 (30%), Positives = 136/266 (51%), Gaps = 8/266 (3%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+++++    ++   K  +E   PAS+TK+M + +  E L S K+ L+ ++ VS+ A 
Sbjct: 52  AKSALLMEPTSGKIIFEKNANEKLEPASVTKIMDMLLTMEALDSGKISLSDKVTVSENAK 111

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S + L      + E  I  +   S ND + A  E++ G+E+ F  LM+ +AK++GM
Sbjct: 112 KMGGSSMLLDTGEVRSVEDLIKGIGIASGNDAAVAMAEYLGGTEEAFVQLMNKRAKELGM 171

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITN 226
            NT +KN +GL  +   TTA D A++   L K  P   KY      +I + R     + N
Sbjct: 172 NNTQFKNCTGLSQEGHYTTAYDIALMSSELLK-HPNILKYTGTYMETISEGRKSPIELVN 230

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           HNKL+      DG+KTG+T ++ + I  +       ++AVVMG PT +ER+++A  L+  
Sbjct: 231 HNKLVRFFKGCDGLKTGFTDSAKYCISATSVRDGARMLAVVMGSPTYKERNKEASMLMNY 290

Query: 287 FLEKKTLKHQQTHRKDNLSSTSLKKS 312
              K T       + D++   +L K 
Sbjct: 291 GFSKYT-SINVLKKGDDIEKVNLNKG 315


>gi|160942970|ref|ZP_02090208.1| hypothetical protein FAEPRAM212_00447 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445664|gb|EDP22667.1| hypothetical protein FAEPRAM212_00447 [Faecalibacterium prausnitzii
           M21/2]
          Length = 410

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 78/250 (31%), Positives = 132/250 (52%), Gaps = 3/250 (1%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +++       P  ++I+ID     +      D+    AS+TK+MTL + FE + + +L +
Sbjct: 48  LTVTPPQLTLPCRAAILIDQTSGTVLYEMNADQTMPIASITKVMTLLLTFEAVHAGRLTM 107

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
           +T +PVS+ A     S+++L+    FT ++ + A+   SAND + A  E + GSE  F  
Sbjct: 108 DTAVPVSEHAYHMGGSQIWLEPGEQFTLDEMLKAVCVSSANDAAVAVAELVGGSEPAFVQ 167

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
            M+ +A ++GM++T ++NA GL  +  ++TARD AI+   +    P+   Y  I     R
Sbjct: 168 QMNARAAELGMEHTTFRNACGLDTEGHLSTARDVAIMSRTILTTCPEVLHYTGIWTDTLR 227

Query: 221 N--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                + N NKLL + + I G+KTG T  +G  I  S       ++AVV+G P+S+ER +
Sbjct: 228 GGQTQLVNTNKLLRRYNGITGLKTGTTGGAGVCITASATRDGLNLIAVVLGAPSSKERFE 287

Query: 279 KALELITSFL 288
            A  L+    
Sbjct: 288 AATTLLDYGF 297


>gi|294083925|ref|YP_003550682.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663497|gb|ADE38598.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 394

 Score =  258 bits (660), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 84/300 (28%), Positives = 158/300 (52%), Gaps = 13/300 (4%)

Query: 24  IQRNIQLMGKILFLSIIMISMA-----SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           ++R +Q+    +F+S   ++++     +E+    +++ I  D +  ++   K  D    P
Sbjct: 2   LKRLLQVTTMSVFISASWLTISNSAGSTEITTPAEFAYIT-DFDTGKVLFQKNADMQMKP 60

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+ K+MT++I FE ++   L LN +  VS+ A  +  S+ +L+  ++ T    +  +I 
Sbjct: 61  ASMAKIMTIFIAFERIREGGLSLNDKFQVSEKAWRKGGSRSFLEVGSFVTVSDLLNGVIV 120

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND +    E ISG+E+ FA  M+  A+K+GM+NT+++N++G  D    TTA+D  IL
Sbjct: 121 QSGNDAAIVIAEGISGTEESFAEEMNFWAQKLGMENTVFRNSTGWPDPELTTTAKDLNIL 180

Query: 198 GILL-----RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
              L        +P  Y  F  ++F Y      N N L+      DG+KTG+T+ SG+ +
Sbjct: 181 SSALISRFPIDEYPDLYPMFKKKRFEYNGIDQPNRNPLVYGTVGADGLKTGHTKESGYGV 240

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELIT-SFLEKKTLKHQQTHRKDNLSSTSLKK 311
           V S   +   +V V+ GM + ++R  ++  L+  +F E K  +  + +   ++++  L K
Sbjct: 241 VGSAIREGQRVVMVLNGMTSMKQRSAESRRLMDLAFREFKQYRFFEANETVDVANVWLGK 300


>gi|78044481|ref|YP_360920.1| D-alanyl-D-alanine carboxypeptidase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996596|gb|ABB15495.1| D-alanyl-D-alanine carboxypeptidase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 391

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 82/310 (26%), Positives = 144/310 (46%), Gaps = 16/310 (5%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           ++        IL L +  I++A E     + ++ VI+VN  +    K  D+  YPAS TK
Sbjct: 1   MKPVRFFALFILILCLKTIALAEEPQIIGRAAA-VINVNSGKFVYLKNADQKMYPASTTK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT  I  E     K +L+ ++ + K A     S ++L      + E  + +++  SAND
Sbjct: 60  IMTTLIALE-----KGNLSDRVYIDKEACYVEGSAIWLNPGEQLSLEDLLYSIMLNSAND 114

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  ++I G    F   M++KA+++G +NT + N +GL + +  TTARD A++     
Sbjct: 115 SAIAVAKYIGGDVATFVQEMNDKARELGAKNTHFVNPNGLPNDDHYTTARDLALIARAAM 174

Query: 203 KNFPQYYKYFSIRKFRYRN-----RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
           +N P++ +  + +           R + NHNKLL +    +GIKTGYT  +   +V S  
Sbjct: 175 QN-PKFREIAATKTKVINRDPKYLRFLQNHNKLLWRYEGANGIKTGYTVKARQCLVASAA 233

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEK-KTLK-HQQTHRKDNLSSTSLKKSLMI 315
              +  +AVV+G       D  A +L+       KT+K   +      +     K+ + +
Sbjct: 234 RDGEEFIAVVLGSEGRNVYD-DATKLLDYAFNNFKTVKLVSKGQEFGKVEVAGGKEPVKL 292

Query: 316 KKLKRTYSQF 325
              +  Y   
Sbjct: 293 IAAEDLYDTV 302


>gi|229103097|ref|ZP_04233784.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-28]
 gi|228680286|gb|EEL34476.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-28]
          Length = 453

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 87/364 (23%), Positives = 162/364 (44%), Gaps = 38/364 (10%)

Query: 1   MLQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKI-LFLSIIMISMASELHAKPKY----- 54
           ML+++  S+  K         ++ +R I ++  I LF SI++ S  +     P       
Sbjct: 1   MLEERFLST--KILEVTEVKGMFCKRFIAIVTVITLFCSIVVTSGRASAETVPAIDVEAG 58

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S+ A   
Sbjct: 59  SAILIEANSGKILYQKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKI 118

Query: 111 -ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
              ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ 
Sbjct: 119 SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIAGKEVNFVKMMNDKSKEF 178

Query: 170 GMQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           GM++  + NA+GL               D+    +ARD AIL   L ++FP+      I 
Sbjct: 179 GMKHYKFVNATGLTNQDLKGYHLEGTNLDEKNKMSARDCAILAQRLIQDFPKILDTAKIP 238

Query: 216 KFRYRN-----RIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           K  ++        + N N +L     +   +DG+KTG T  +G     ++      +++V
Sbjct: 239 KKTFQKGGKYPIDMVNFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISV 298

Query: 267 VMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
           V+   +   R  +  +L         +K  + + KD +        +   K K    Q K
Sbjct: 299 VIKANSHTARFDETKKLYDYGFANFEVK--KVYGKDAVVKGHETVRVANAKDKDVVVQTK 356

Query: 327 KIDA 330
           +  +
Sbjct: 357 QAVS 360


>gi|208779297|ref|ZP_03246643.1| D-alanyl-D-alanine carboxypeptidase [Francisella novicida FTG]
 gi|254374319|ref|ZP_04989801.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella
           novicida GA99-3548]
 gi|151572039|gb|EDN37693.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella
           novicida GA99-3548]
 gi|208745097|gb|EDZ91395.1| D-alanyl-D-alanine carboxypeptidase [Francisella novicida FTG]
 gi|332678194|gb|AEE87323.1| D-alanyl-D-alanine carboxypeptidase [Francisella cf. novicida Fx1]
          Length = 444

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 85/334 (25%), Positives = 137/334 (41%), Gaps = 59/334 (17%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + + +D     +   K  D  R PASLTK+MT YI+   +++  L  +T IP+S+ AA
Sbjct: 54  APAWVAMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENAA 113

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   SK+Y+K     +    +  +   S ND + A  E+I G+ + F  LM+  AK IGM
Sbjct: 114 STGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIGM 173

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII------- 224
            NT + N  GL    Q TTA D A+L      NFP+ YK +  +   +            
Sbjct: 174 NNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIAD 233

Query: 225 ---------------------------------------------TNHNKLLNKMHNIDG 239
                                                         N N+LL      DG
Sbjct: 234 RKQCLPKFDRATGNVIESYTVKGLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGADG 293

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK------KTL 293
           +KTG+T  +G+ +V+S +   +  ++VV+G  +S +RD ++ +L+   L K         
Sbjct: 294 MKTGHTDAAGYCLVSSAKQDGERFISVVLGTTSSAKRDSESAKLLRYALSKYENVLLYKA 353

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
               T   DN+ +    + L +   +  Y    K
Sbjct: 354 NSPVTISADNIPNAKAGQKLTVASNQNIYKTVPK 387


>gi|160915294|ref|ZP_02077507.1| hypothetical protein EUBDOL_01303 [Eubacterium dolichum DSM 3991]
 gi|158433093|gb|EDP11382.1| hypothetical protein EUBDOL_01303 [Eubacterium dolichum DSM 3991]
          Length = 414

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 94/330 (28%), Positives = 161/330 (48%), Gaps = 26/330 (7%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKP------KYSSIVIDVNKNQMTG-FKQDEPRYP 77
           +R ++L   +L LS  ++ + +              S  +++    ++     +++  YP
Sbjct: 29  KRIMKLALVVLCLSASLLPITARKEVSDVGLKGDAKSVYLMEYTSGKVIYAEHENKRLYP 88

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TKMM L +I+E L   +L L+  +  S+ AA+   S+++L+ +   + E  I ++  
Sbjct: 89  ASMTKMMGLLLIYEALHDGQLQLDDMVTTSEFAASMGGSQVFLEPQETLSAEDMIKSICI 148

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            SAND   A GE ++GS + F   M+ KAK++GM NT + NA+GLHD    TTA+D A+L
Sbjct: 149 ASANDAMVAMGEHLAGSHEAFVNKMNRKAKELGMNNTHFMNATGLHDDKHYTTAKDMALL 208

Query: 198 GILLRKN-FPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           G  L K    +  K  S     IR+   +   + N NKLL ++  +DG+KTG+T+ +   
Sbjct: 209 GQALLKEGGEELLKITSTYDAYIREDSDKKFWLVNTNKLLKQVEGVDGLKTGFTKEALSC 268

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK-------------TLKHQQT 298
           I  S + K+  ++AVVMG   ++ R+  A  L+     +              TL  +  
Sbjct: 269 ITVSAKRKELRLIAVVMGASNAKARNAIASGLLEYGFAQYAQGLLYAKGTRLDTLSFENG 328

Query: 299 HRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
             K          S + +K K    + K+I
Sbjct: 329 KPKQADIVALEDISYVFEKGKEPKEKHKEI 358


>gi|254372818|ref|ZP_04988307.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella
           tularensis subsp. novicida GA99-3549]
 gi|151570545|gb|EDN36199.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella
           novicida GA99-3549]
          Length = 444

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/334 (25%), Positives = 137/334 (41%), Gaps = 59/334 (17%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + + +D     +   K  D  R PASLTK+MT YI+   +++  L  +T IP+S+ AA
Sbjct: 54  APAWVAMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENAA 113

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   SK+Y+K     +    +  +   S ND + A  E+I G+ + F  LM+  AK IGM
Sbjct: 114 STGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIGM 173

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII------- 224
            NT + N  GL    Q TTA D A+L      NFP+ YK +  +   +            
Sbjct: 174 NNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIAD 233

Query: 225 ---------------------------------------------TNHNKLLNKMHNIDG 239
                                                         N N+LL      DG
Sbjct: 234 RKQCLPKFDRATGNVIESYTVKGLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGADG 293

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK------KTL 293
           +KTG+T  +G+ +V+S +   +  ++VV+G  +S +RD ++ +L+   L K         
Sbjct: 294 MKTGHTDAAGYCLVSSAKQDGERFISVVLGTTSSAKRDSESAKLLRYALSKYENVLLYKA 353

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
               T   DN+ +    + L +   +  Y    K
Sbjct: 354 NSPVTISADNIPNAKAGQKLTVASNQNIYKTVPK 387


>gi|20807406|ref|NP_622577.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20515927|gb|AAM24181.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 416

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 133/291 (45%), Gaps = 23/291 (7%)

Query: 37  LSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEY 92
            + + +   +E    P+    +++++D    Q+   K    R YPAS TK++T  I  E 
Sbjct: 14  FAFLSVPAHAETPQPPEIVGPTAVLMDFTTGQVLYDKNMHKRMYPASTTKILTAIIALE- 72

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
               K  L+  +  S+       + ++L      T EQ + AL+  SAND + A  E I 
Sbjct: 73  ----KGKLDDVVTCSENVTKIEGNSIFLSPGEQLTLEQLLYALMLESANDAAIAIAEHIG 128

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           GS + FA +M+ KA++IG  N+ + N +GL D+N  +T  D A +     +N  ++ K  
Sbjct: 129 GSVENFAKMMNEKAREIGAYNSHFVNPNGLPDENHYSTPYDMAQIARYAMQN-AEFRKIV 187

Query: 213 SIRKFRY-------RNRIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           S   ++        + R +   N+LL          DG+KTGYT  +G  +V S      
Sbjct: 188 STLHYQIPPTNKFDKPRDLWISNRLLKPSRFHYEGADGVKTGYTVAAGQVLVASATRDGH 247

Query: 262 PIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
            +++V+MG           ++L+    +  +L  + T + + ++S  L K 
Sbjct: 248 RLISVIMGDEGINI-WTDTIKLLDYGFQNFSLV-KVTQKDEVITSIELGKG 296


>gi|147678211|ref|YP_001212426.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum
           thermopropionicum SI]
 gi|146274308|dbj|BAF60057.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum
           thermopropionicum SI]
          Length = 407

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/260 (29%), Positives = 120/260 (46%), Gaps = 19/260 (7%)

Query: 43  SMASELHAKPK-----YSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSK 96
           + AS L A         +++VID+   Q+   K  + R YPAS TK+MT  I  E  +  
Sbjct: 18  ASASPLQASSGPEIVGEAAVVIDIKNGQVLFEKNPDRRVYPASTTKIMTAVIALENGR-- 75

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
              L+  + V   A     S + L+E    + E  + AL+  S ND + A    + GS +
Sbjct: 76  ---LDAAVAVPGEACNIEGSSIGLQEGEKISLEDLLYALMLNSGNDTAVAIACHVGGSVE 132

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F  +M+ KA ++G  NT + N +GL D    +TA D A++     +N P++ K  S R 
Sbjct: 133 AFVSMMNKKAAELGAVNTHFNNPNGLPDPGHYSTAYDMALISRYAMQN-PEFRKIVSTRV 191

Query: 217 FRYR------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
              R         + NHN+LL       G+KTGYT  +G  +V+S   +   ++AVVM  
Sbjct: 192 KTIRRSVPDAQVYLENHNRLLWLYEGATGVKTGYTVEAGQCLVSSAARQGRELLAVVMKS 251

Query: 271 PTSQERDQKALELITSFLEK 290
             S      +  L+    ++
Sbjct: 252 EGSNI-WSDSTSLMDYCFKE 270


>gi|313901924|ref|ZP_07835342.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467819|gb|EFR63315.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 475

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 119/256 (46%), Gaps = 16/256 (6%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           S   +  ++   ++I++D    Q+   +  D     AS TK+MT  +  E     +  L 
Sbjct: 69  SAPQQPPSQDARAAILVDAATGQVLYARNADATMPMASTTKIMTALLAIE-----RGDLQ 123

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
             I  S+ A     S LYL      T E+ +  L+ +S ND + A  E ++GS + F   
Sbjct: 124 QVITTSQRAFGVEGSSLYLALGEQRTLEELLYGLMLQSGNDAAVAIAEGLAGSVETFVQW 183

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR- 220
           M+ +A+++G+++T + +  GL  ++  T+ARD A L  +   N P + +    R++R   
Sbjct: 184 MNQRARELGLEHTRFADPHGLASRDHYTSARDLATLARVALAN-PTFRRVVGTREYRMPW 242

Query: 221 -----NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM-PTSQ 274
                 R++ NHN+ L +     G+K GYT  +   +V S +     +V V++G  PT  
Sbjct: 243 PEKNSERVLYNHNRFLWRYDGATGVKNGYTSAARGALVASAQRGGVELVGVLLGAHPTGM 302

Query: 275 ERDQKALELITSFLEK 290
            RD     L+     +
Sbjct: 303 YRD--MAALMDWGFAR 316


>gi|229059652|ref|ZP_04197030.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH603]
 gi|228719665|gb|EEL71264.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH603]
          Length = 317

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/259 (28%), Positives = 140/259 (54%), Gaps = 16/259 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E+ AK   ++I+ID +  ++      +E   PAS++KMMT Y++ E + + K+H   
Sbjct: 59  IPPEIDAK---AAIIIDASNGEVIYQNNENEAVAPASMSKMMTAYLVLESIHNGKVHWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S+ +A    +K+ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM
Sbjct: 116 PVKISEKSAQTEGAKIPMQANDTLTVKDLYHALMIESANNSAVALAEHVAKTEKNFVQLM 175

Query: 163 SNKAKKIGMQN-TIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           + KAK++ M +   + NASGL + +      TA D + L   L K++P+  +   +R+ +
Sbjct: 176 NEKAKQLEMSDKAKFANASGLQEPDGSETKMTAADVSKLAYHLIKDYPEILEVTHLRQSQ 235

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  +TN N++LNK         IDG+KTG+T ++G+    + +  D+ ++ VVMG 
Sbjct: 236 LAFNNINVTNTNEMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDNRVITVVMGT 295

Query: 271 PTSQERDQKALELITSFLE 289
            +  +R  +  +L++   +
Sbjct: 296 KSKTKRFTETNKLMSYAFQ 314


>gi|84516821|ref|ZP_01004179.1| D-alanyl-D-alanine carboxypeptidase [Loktanella vestfoldensis
           SKA53]
 gi|84509289|gb|EAQ05748.1| D-alanyl-D-alanine carboxypeptidase [Loktanella vestfoldensis
           SKA53]
          Length = 392

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/274 (27%), Positives = 140/274 (51%), Gaps = 10/274 (3%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLT 81
           Y  R + + G I+  +    + A E  A+   ++ V D     +   K  + P  PAS++
Sbjct: 3   YTARGL-IAGLIMICATAAQAQALETSAR---AAYVYDQTTGTVLLAKDADLPLPPASMS 58

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT+Y+ FE +   +L ++  +PVS  AA+   S ++L        E  +  +I  S N
Sbjct: 59  KLMTIYMAFEAIADGRLSIDDVLPVSAHAASFGGSSMFLDTTDRVRVEDLLRGVIVLSGN 118

Query: 142 DVSTAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           D S    E +S  G+E  F  +M+++A+++GM  + + NASG        + +D  IL  
Sbjct: 119 DASVVLAEALSPDGTEAGFGRMMTDRARQLGMTQSFFVNASGWPAAEHRMSVKDLGILSS 178

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIIT---NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
            L  +FP +Y  FS  +F + NR+ +   N N +L      DG+KTG+T+ +G+ +V S 
Sbjct: 179 RLISDFPTFYPLFSETEFAFDNRVPSNSQNRNPILAMGIGADGLKTGHTQEAGYGLVGSA 238

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              +  ++ VV G+ T+++R +++  ++     +
Sbjct: 239 MQGNRRVIFVVTGLQTARDRAEESERIVNWAFRQ 272


>gi|57339684|gb|AAW49829.1| hypothetical protein FTT1029 [synthetic construct]
          Length = 479

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/334 (25%), Positives = 137/334 (41%), Gaps = 59/334 (17%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + + +D     +   K  D  R PASLTK+MT YI+   +++  L  +T IP+S+ AA
Sbjct: 80  APAWVTMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENAA 139

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   SK+Y+K     +    +  +   S ND + A  E+I G+ + F  LM+  AK IGM
Sbjct: 140 STGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIGM 199

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII------- 224
            NT + N  GL    Q TTA D A+L      NFP+ YK +  +   +            
Sbjct: 200 NNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIAD 259

Query: 225 ---------------------------------------------TNHNKLLNKMHNIDG 239
                                                         N N+LL      DG
Sbjct: 260 RKQCLPKFDRATGNVIESYTVKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGADG 319

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK------KTL 293
           +KTG+T  +G+ +V+S +   +  ++VV+G  +S +RD ++ +L+   L K         
Sbjct: 320 MKTGHTDAAGYCLVSSAKQDGERFISVVLGTTSSAKRDSESAKLLRYALSKYENVLLYKA 379

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
               T   DN+ +    + L +   +  Y    K
Sbjct: 380 NSPVTISADNIPNAKAGQKLTVASNQNIYKTVPK 413


>gi|229119057|ref|ZP_04248397.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock1-3]
 gi|228664386|gb|EEL19887.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock1-3]
          Length = 453

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/364 (23%), Positives = 162/364 (44%), Gaps = 38/364 (10%)

Query: 1   MLQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKI-LFLSIIMISMASELHAKPKY----- 54
           ML+++  S  KK         ++ +R I ++  + LF SI++ S  +     P       
Sbjct: 1   MLEERFLS--KKILEVTEVKGMFCKRFIAIVTVLALFCSIVVTSGRASAETVPAIDVEAG 58

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   K+  + ++ +S+ A   
Sbjct: 59  SAILIEANSGKILYQKNADESLAIASMTKMMSEYLVHEAVAKGKIKWDQKVKISEYAHKI 118

Query: 111 -ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
              ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ 
Sbjct: 119 SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIAGKEVNFVKMMNDKSKEF 178

Query: 170 GMQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           GM++  + N++GL               D+    +ARD AIL   L ++FPQ      I 
Sbjct: 179 GMKDYKFVNSTGLTNQDLKGYHPEGTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIP 238

Query: 216 KFRYRN-----RIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           K  ++        + N N +L     +   +DG+KTG T  +G     ++      +++V
Sbjct: 239 KKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISV 298

Query: 267 VMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
           V+   +   R  +  +L         +K+   + KD +        +   K K    Q K
Sbjct: 299 VIKAKSHTARFDETKKLYDYGFANFEVKN--VYGKDAVVKGHETVRVANAKDKDVVVQTK 356

Query: 327 KIDA 330
           +  A
Sbjct: 357 QAVA 360


>gi|90417678|ref|ZP_01225590.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337350|gb|EAS51001.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 364

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 125/247 (50%), Gaps = 9/247 (3%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++++D     +   K  D P  PASL KMMT+ I+F  ++   L L+T+ PVS+ A    
Sbjct: 11  ALLVDGETGTVLFAKNADAPFPPASLAKMMTMEIVFAAIKDGTLTLDTEFPVSEHAWRTG 70

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S ++ + K+       I   I +SAND +    E + GSE  FA  M+ +A+++
Sbjct: 71  GAPSRTSTMFAELKSQVPVSALIRGAIIQSANDAAIVIAEGMEGSEAAFAERMNARAREL 130

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM N+ + N +GL   +Q  TARD   L   LR  +P+ Y  ++   F +      N N 
Sbjct: 131 GMINSRFANPTGLPADDQYVTARDLITLARHLRSTYPELYAIYAEPAFEWNKIFQRNRNP 190

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF-- 287
           LL+     DGI+TGYT  SGF++V +  +     +  V G+ T+ +R  +A +L+     
Sbjct: 191 LLSMEIGADGIETGYTEASGFSLVGATSHGGRDTLLAVSGLETAGDRASEARKLLLWARE 250

Query: 288 -LEKKTL 293
             E +TL
Sbjct: 251 SFESETL 257


>gi|187931647|ref|YP_001891631.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712556|gb|ACD30853.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 444

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/334 (25%), Positives = 137/334 (41%), Gaps = 59/334 (17%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + + +D     +   K  D  R PASLTK+MT YI+   +++  L  +T IP+S+ AA
Sbjct: 54  APAWVTMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENAA 113

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   SK+Y+K     +    +  +   S ND + A  E+I G+ + F  LM+  AK IGM
Sbjct: 114 STGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIGM 173

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII------- 224
            NT + N  GL    Q TTA D A+L      NFP+ YK +  +   +            
Sbjct: 174 NNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIAD 233

Query: 225 ---------------------------------------------TNHNKLLNKMHNIDG 239
                                                         N N+LL      DG
Sbjct: 234 RKQCLPKFDRATGNVIESYTVKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGADG 293

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK------KTL 293
           +KTG+T  +G+ +V+S +   +  ++VV+G  +S +RD ++ +L+   L K         
Sbjct: 294 MKTGHTDAAGYCLVSSAKQDGERFISVVLGTTSSAKRDSESAKLLRYALSKYENVLLYKA 353

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
               T   DN+ +    + L +   +  Y    K
Sbjct: 354 NSPVTISADNIPNAKAGQKLTVASNQNIYKTVPK 387


>gi|148559912|ref|YP_001259847.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840]
 gi|148371169|gb|ABQ61148.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840]
          Length = 352

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 92/296 (31%), Positives = 157/296 (53%), Gaps = 14/296 (4%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           S   A P   SI +DV   ++   +QD  +  YPASLTKMMT Y+ F  LQS ++ L + 
Sbjct: 2   SGAAANP---SIAVDVATGKV-YEQQDAFQRWYPASLTKMMTAYVTFRALQSGQMTLESP 57

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           + ++  A+ + PSK+  K  +  T +  +  ++ +SANDVS A  E + G+E  F   M+
Sbjct: 58  VRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVAEAVGGTEAAFVQRMN 117

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRN 221
            +A+++GM  + + N +GLHD N  TTARD A+L + LR+ FPQY  YF+          
Sbjct: 118 AEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRREFPQYAHYFATEAIDPGAGK 177

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           ++  N+N LL +    DG+KTG+   SGFN+  S       ++A+V+G    + R  +A 
Sbjct: 178 KVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRTVLAIVLGADRQETRAIQAA 237

Query: 282 ELITSFLEKK-----TLKHQQTHRKDNL-SSTSLKKSLMIKKLKRTYSQFKKIDAK 331
           +++T     +     TL      +  NL  +  ++K++  ++        ++++ +
Sbjct: 238 QMMTDAFRARSSGGPTLATLHPAQTANLNQAVDMRKAICSEQAMADRWDGREVEGR 293


>gi|330820568|ref|YP_004349430.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia gladioli
           BSR3]
 gi|327372563|gb|AEA63918.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia gladioli
           BSR3]
          Length = 306

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 78/260 (30%), Positives = 126/260 (48%), Gaps = 13/260 (5%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
            +   S +HA    + +V+D    ++ G    D  R PASLTK+MT Y++ + L+   L 
Sbjct: 34  AVGADSAIHAA---AWLVVDGESGRVLGEHDADAERQPASLTKLMTAYVVLDALRRGALR 90

Query: 100 LNTQIPVSKTAAT---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           L+  + V         Q+ +++YL      T E  +  LI  SAND +      + GS  
Sbjct: 91  LDETLRVDGADLADLGQDEARMYLVAGRSVTVEDLVDGLIVASANDAAMVLARRVGGSRA 150

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F   M++ A+++GM +T Y   SG+      +TARD A L   L  +FP YY+Y + ++
Sbjct: 151 GFEQRMNDTARRLGMTHTHYTTPSGITTPGNHSTARDLATLARRLTADFPVYYRYSARQQ 210

Query: 217 FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD------DPIVAVVMGM 270
           F Y      N N LL     +DG+KTG+T+ +G+ IV + R +         + AVV+G 
Sbjct: 211 FAYGGFHKRNKNWLLGSAPGVDGLKTGHTQAAGYCIVATARRRQAAPPMARRVFAVVLGA 270

Query: 271 PTSQERDQKALELITSFLEK 290
           P++  R      L+     +
Sbjct: 271 PSASARIDAGRRLLDEAYAQ 290


>gi|92117541|ref|YP_577270.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis
           X14]
 gi|91800435|gb|ABE62810.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis
           X14]
          Length = 414

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 69/285 (24%), Positives = 136/285 (47%), Gaps = 16/285 (5%)

Query: 26  RNIQLMGKILFLSIIMISMAS----------ELHAKPKYSSIVIDVNKNQMTGFKQ-DEP 74
           R +     +L +    I++A+          E++     ++I+++ N   +   K  DE 
Sbjct: 17  RGLMAAAIVLAVGFDGIALAANNSVQGAKKEEIYETVAPTAILVEANSGSVLFEKNADEL 76

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTE 129
             P+S+ K+MT+ ++F+ ++  ++ L  +  +S+    +       S ++    +  + +
Sbjct: 77  HAPSSMMKLMTVEVVFDAIRKGQIKLTDEFVISENTWRKGGAPSGGSTMFAAINSRVSVD 136

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
             +   I +S ND   A  E I+G+E  FA  M+ +A+ +GM  + + N++GL D     
Sbjct: 137 DLLHGAIIQSGNDSCMALAEGIAGNESAFAEKMTARARDLGMTRSTFANSNGLPDPGNKM 196

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
           T R+ A+L   +   +P +YK F  R+F +      N N LL  M   DG+KTGYT+  G
Sbjct: 197 TVRELAVLARHIVLTYPDFYKLFGEREFTWNKIRQFNRNPLLTAMEGADGLKTGYTKEGG 256

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
           + +V S       ++ VV G+ ++ +R   A +L+        ++
Sbjct: 257 YGMVGSAVQNGTRLIVVVNGLASADDRAAAAKKLLEWGFRNFEVR 301


>gi|198284286|ref|YP_002220607.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218665720|ref|YP_002426947.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198248807|gb|ACH84400.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218517933|gb|ACK78519.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 388

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 78/275 (28%), Positives = 122/275 (44%), Gaps = 15/275 (5%)

Query: 29  QLMGKILFL--SIIMISMASELHAKPK------------YSSIVIDVNKNQMTGFKQDE- 73
            L+ +ILFL         AS     P              S  ++D +  Q+   K +  
Sbjct: 6   SLITRILFLLAGFCFTPWASAATPTPMLPTPPAPALPAIVSYTLMDYDTGQIIAAKSENL 65

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
            R PASLTK+MT Y+ ++ +Q   L     IP+S TA     S ++++       +Q + 
Sbjct: 66  RRAPASLTKLMTAYLTYQAIQGGTLTAQENIPISNTAWKTGGSSMFVQPNVPANVDQLLH 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+  S ND + A  E + GS+  F  LM++ A ++ + NT Y N  GL D N  TTA D
Sbjct: 126 GLLIDSGNDAAVALAEAVGGSQSGFVTLMNDSALRLNLHNTHYSNVDGLPDNNLYTTALD 185

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            A L     + FPQ  +    + + Y      + N +L +   +DG+KTG T  SG+ I 
Sbjct: 186 VAKLSRAFIRQFPQVIQITKEKSYTYNGITQRSWNPVLFRDPTVDGLKTGLTDASGYCID 245

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            +       ++AVV+G P+          L+    
Sbjct: 246 ATAIRNGRRLIAVVLGGPSWAGSTNAVEALLDYGY 280


>gi|75675657|ref|YP_318078.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
           winogradskyi Nb-255]
 gi|74420527|gb|ABA04726.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
           winogradskyi Nb-255]
          Length = 413

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 68/281 (24%), Positives = 132/281 (46%), Gaps = 16/281 (5%)

Query: 30  LMGKILFLSIIMISMAS----------ELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPA 78
           +   IL +S+  + +A+          +++     ++I+++     +   K  DE R P+
Sbjct: 20  VAAAILTISLDGVVLAANNSVQGAKKEDIYETSAPTAILLEAKSGSVLFEKNADELRAPS 79

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGIL 133
           S+ K+MT  ++F  +   ++ L  +  +S+    +       S ++    +    +  + 
Sbjct: 80  SMMKLMTAEVVFNAVTKGEIKLTDEYVISENTWRKGGAPSGGSTMFAAINSRIPVQDLLR 139

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
             I +S ND   A  E I+G E  FA  M+ +A+++GM  + + N+SGL   +   T R+
Sbjct: 140 GAIIQSGNDSCMALAEGIAGHESAFAEKMTARARELGMSRSTFANSSGLPHPDNKMTVRE 199

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            A L   +   +P +YK F  R+F +     +N N LL  M   DG+KTGYT+  G+ +V
Sbjct: 200 LAALARHIILTYPDFYKLFGEREFTWNKIRQSNRNALLAAMDGADGLKTGYTKEGGYGLV 259

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
            S+      ++ VV G+ ++  R   A +L+        ++
Sbjct: 260 GSVVQNGTRLIVVVNGLESADYRLTAARKLLEWGFRNFEVR 300


>gi|126462962|ref|YP_001044076.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332558995|ref|ZP_08413317.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
           WS8N]
 gi|126104626|gb|ABN77304.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332276707|gb|EGJ22022.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
           WS8N]
          Length = 389

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 84/270 (31%), Positives = 142/270 (52%), Gaps = 12/270 (4%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYI 88
            +  IL L   + +MA +  A+  +   V DV  + +   K   EP  PAS++K+MTL +
Sbjct: 7   FLALILSLVTALPAMAFDTRARAAW---VYDVTTHTVLLDKNAHEPLPPASMSKLMTLNM 63

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           +FE L+  ++ + T   VS  A     SK++++E+   T E+ I  +I  S ND      
Sbjct: 64  LFEALRDGRVTMETTFAVSTKAKQMGGSKMFVEERDRPTVEELIHGIIVNSGNDACVVVA 123

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E ++G+E  FA  M+ +AK +GM ++ + N+SG  D     +  D  IL + L + FP++
Sbjct: 124 EGLNGTESDFARAMTVRAKALGMTDSTFTNSSGWPDPGHRMSVHDLGILAVRLIEEFPEF 183

Query: 209 YKYFSIRKFRYRNRII---TNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSL-RYKD 260
           Y YFS  +F Y++R+     N N LL    N     DG+KTG+T+ +G+ +V S  +   
Sbjct: 184 YPYFSHTEFNYKDRVPSNANNRNPLLRLGPNGDWTADGLKTGHTQEAGYGLVGSAVQKDG 243

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEK 290
             IV V+ G+ T  +R Q+  +++     +
Sbjct: 244 RRIVFVLTGLATEADRAQEGEQIVNWAFRQ 273


>gi|862471|gb|AAC36937.1| ORF4 [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 255

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 65/250 (26%), Positives = 120/250 (48%), Gaps = 8/250 (3%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPAS 79
            ++I  ++  M     L+   +S A +  A    + +++D    Q+     + + R PAS
Sbjct: 6   RLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +      
Sbjct: 66  LTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSR 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI  S ND   A  ++I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D
Sbjct: 126 GLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYD 185

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNI 252
            A+L   +    P++Y  +S +   +      N N LL  K  +IDG+KTG+T  +GFN+
Sbjct: 186 LAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNL 245

Query: 253 VTSLRYKDDP 262
           + S       
Sbjct: 246 IASAVDGQRR 255


>gi|169832020|ref|YP_001718002.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638864|gb|ACA60370.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 400

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 63/275 (22%), Positives = 133/275 (48%), Gaps = 16/275 (5%)

Query: 27  NIQLMGKILFLSIIMISMASELHA-KPKY---SSIVIDVNKNQMTGFKQDEP-RYPASLT 81
           N ++   ++ + +  +  A    A +P+    +++++D++  +    K  +   YPAS T
Sbjct: 2   NSRIFYFLILIPLCFLPAAGGAQAGEPEITGEAAVLMDLDTGRFLYEKNADRVMYPASTT 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K++T  +    +++    ++ ++ +S+ A     S ++      F+ E+ + + +  SAN
Sbjct: 62  KILTALV---AVRNGYDRMDDRVTMSENAVYAGGSAIWSAPGEEFSLEELLWSALLGSAN 118

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D +TA  E + GS ++F+  M+ +A+++G  NT + N  GLHD+   TTARD A++    
Sbjct: 119 DAATAVAEHLCGSVEEFSAAMNAEARRLGAWNTHFVNPHGLHDERHYTTARDLALIARAA 178

Query: 202 RKNFPQYYKYFSIRKFRYRN------RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
             N P   +    + ++          ++ N NKLL +     G+KTGYT  +G  +V +
Sbjct: 179 L-NEPLIREMAGTKTYQLSRADPDALSLLVNTNKLLWRYEGAIGLKTGYTSQAGQCLVAA 237

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                  ++AVV+    +      ++ L+     +
Sbjct: 238 AERNGRTVLAVVLKSEGNNI-WTDSIALLNYGFNR 271


>gi|167037830|ref|YP_001665408.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|300914766|ref|ZP_07132082.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X561]
 gi|307724000|ref|YP_003903751.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X513]
 gi|320116247|ref|YP_004186406.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166856664|gb|ABY95072.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|300889701|gb|EFK84847.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X561]
 gi|307581061|gb|ADN54460.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X513]
 gi|319929338|gb|ADV80023.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 421

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/322 (24%), Positives = 149/322 (46%), Gaps = 27/322 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQDEPR-YPAS 79
           +++ I  +  +  L + +  + + +   P+    +++++D    Q+   K    R YPAS
Sbjct: 1   MKKIIASLLTLFILVVQITPVYANVPPPPEIVGPTAVLMDFTTGQVLYDKNMHKRMYPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
            TK++T  I  E     K +LN  +  S      + + ++L      T EQ + A++ +S
Sbjct: 61  TTKILTAIIAIE-----KGNLNDIVTASNNVTKIDGNSIFLSPGEQLTLEQLLYAIMLQS 115

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AND + A  E I GS + FA +M+ KAK+IG  ++ + N +GL D N  +T  D A++  
Sbjct: 116 ANDAAIAIAEHIGGSVENFAKMMNEKAKEIGAYDSHFVNPNGLPDDNHYSTPYDMALIAR 175

Query: 200 LLRKNFPQYYKYFSIRKFRYRN-------RIITNHNKLLN----KMHNIDGIKTGYTRNS 248
              +N P++ K  +   ++          R +   N+L+     +    DG+KTGYT  +
Sbjct: 176 YAMQN-PEFRKIVTTIHYQIPPTNKFDKVRDLWLSNRLIKPSSFRYEGADGVKTGYTVAA 234

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
           G  +  S       +++V+MG   +       ++L+    +  +L  ++T + + ++   
Sbjct: 235 GQVLAASATRDGRRLISVIMGDQGTNI-WTDTIKLLDYGFQNFSLV-KKTEKGETITYID 292

Query: 309 LKKS----LMIKKLKRTYSQFK 326
           L KS     +I K    Y   K
Sbjct: 293 LGKSHFKLPLIAKEDFYYEVPK 314


>gi|56708118|ref|YP_170014.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein)
           family protein [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670589|ref|YP_667146.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein)
           family protein [Francisella tularensis subsp. tularensis
           FSC198]
 gi|134301929|ref|YP_001121898.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|224457209|ref|ZP_03665682.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254370602|ref|ZP_04986607.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874916|ref|ZP_05247626.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604610|emb|CAG45662.1| D-alanyl-D-alanine carboxypeptidase (Penicillin binding protein)
           family protein [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110320922|emb|CAL09045.1| D-alanyl-D-alanine carboxypeptidase (Penicillin binding protein)
           family protein [Francisella tularensis subsp. tularensis
           FSC198]
 gi|134049706|gb|ABO46777.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|151568845|gb|EDN34499.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840915|gb|EET19351.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159318|gb|ADA78709.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 444

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 85/334 (25%), Positives = 137/334 (41%), Gaps = 59/334 (17%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + + +D     +   K  D  R PASLTK+MT YI+   +++  L  +T IP+S+ AA
Sbjct: 54  APAWVTMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENAA 113

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   SK+Y+K     +    +  +   S ND + A  E+I G+ + F  LM+  AK IGM
Sbjct: 114 STGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIGM 173

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII------- 224
            NT + N  GL    Q TTA D A+L      NFP+ YK +  +   +            
Sbjct: 174 NNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIAD 233

Query: 225 ---------------------------------------------TNHNKLLNKMHNIDG 239
                                                         N N+LL      DG
Sbjct: 234 RKQCLPKFDRATGNVIESYTVKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGADG 293

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK------KTL 293
           +KTG+T  +G+ +V+S +   +  ++VV+G  +S +RD ++ +L+   L K         
Sbjct: 294 MKTGHTDAAGYCLVSSAKQDGERFISVVLGTTSSAKRDSESAKLLRYALSKYENVLLYKA 353

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
               T   DN+ +    + L +   +  Y    K
Sbjct: 354 NSPVTISADNIPNAKAGQKLTVASNQNIYKTVPK 387


>gi|229100275|ref|ZP_04231166.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-29]
 gi|228683170|gb|EEL37157.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-29]
          Length = 453

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/364 (23%), Positives = 162/364 (44%), Gaps = 38/364 (10%)

Query: 1   MLQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKI-LFLSIIMISMASELHAKPKY----- 54
           ML+++  S+  K         ++ +R I ++  + LF SI++ S  +     P       
Sbjct: 1   MLEERFLST--KILEVTEVKGMFCKRFIAIVTVLALFCSIVVTSGRASAETVPAIDVEAG 58

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S+ A   
Sbjct: 59  SAILIEANSGKILYQKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKI 118

Query: 111 -ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
              ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ 
Sbjct: 119 SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIAGKEVNFVKMMNDKSKEF 178

Query: 170 GMQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           GM++  + N++GL               D+    +ARD AIL   L ++FPQ      I 
Sbjct: 179 GMKDYKFVNSTGLTNQDLKGYHPEGTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIP 238

Query: 216 KFRYRN-----RIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           K  ++        + N N +L     +   +DG+KTG T  +G     ++      +++V
Sbjct: 239 KKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISV 298

Query: 267 VMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
           V+   +   R  +  +L         +K+   + KD +        +   K K    Q K
Sbjct: 299 VIKAKSHTARFDETKKLYDYGFANFEVKN--VYGKDAVVKGHETVRVANAKDKDVVVQTK 356

Query: 327 KIDA 330
           +  A
Sbjct: 357 QAVA 360


>gi|256752163|ref|ZP_05493029.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256748977|gb|EEU62015.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 421

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/322 (24%), Positives = 149/322 (46%), Gaps = 27/322 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQDEPR-YPAS 79
           +++ I  +  +  L + +  + + +   P+    +++++D    Q+   K    R YPAS
Sbjct: 1   MKKIIASLLTLFILVVQITPVYANVPPPPEIVGPTAVLMDFTTGQVLYDKNMHKRMYPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
            TK++T  I  E     K +LN  +  S      + + ++L      T EQ + A++ +S
Sbjct: 61  TTKILTAIIAIE-----KGNLNDIVTASNNVTKIDGNSIFLSPGEQLTLEQLLYAIMLQS 115

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AND + A  E I GS + FA +M+ KAK+IG  ++ + N +GL D N  +T  D A++  
Sbjct: 116 ANDAAIAIAEHIGGSVENFAKMMNEKAKEIGAYDSHFVNPNGLPDDNHYSTPYDMALIAR 175

Query: 200 LLRKNFPQYYKYFSIRKFRYRN-------RIITNHNKLLN----KMHNIDGIKTGYTRNS 248
              +N P++ K  +   ++          R +   N+L+     +    DG+KTGYT  +
Sbjct: 176 YAMQN-PEFRKIVTTIHYQIPPTNKFDKVRDLWLSNRLIKPSSFRYEGADGVKTGYTVAA 234

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
           G  +  S       +++V+MG   +       ++L+    +  +L  ++T + + ++   
Sbjct: 235 GQVLAASATRDGRRLISVIMGDQGTNI-WTDTIKLLDYGFQNFSLV-KKTEKGETITYID 292

Query: 309 LKKS----LMIKKLKRTYSQFK 326
           L KS     +I K    Y   K
Sbjct: 293 LGKSHFKLPLIAKEDFYYEVPK 314


>gi|253576372|ref|ZP_04853702.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844265|gb|EES72283.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 399

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/317 (25%), Positives = 137/317 (43%), Gaps = 17/317 (5%)

Query: 29  QLMGKILFLSII---MISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMM 84
            L+  +L  + +    +  A +  +    ++ VIDV   ++      D+    ASLTK+M
Sbjct: 15  CLLAAVLLFAWLNPQAVQAAPDAPSIHAQAAAVIDVTSGRLLYSLHGDDELPIASLTKIM 74

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T  +  E+ +     L+  + V K A  +  S LYL      + E  +  L+ RS ND +
Sbjct: 75  TAIVAIEHGK-----LSDMVTVGKNAYGKEGSSLYLHLGEEMSLENMLYGLMLRSGNDAA 129

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
           TA  E + GSE+ F  LM+ KAK +G+ +T ++N  GL  K   ++A D A L     KN
Sbjct: 130 TAIAEHVGGSEEGFVYLMNEKAKLLGLTHTHFQNPHGLDAKGHYSSANDLAKLTSYALKN 189

Query: 205 FPQYYKYFSIRKFRYRN------RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
            P + +          N          N NK+L      DG+KTGYT+ +   +V+S   
Sbjct: 190 -PHFKEIVRTPSKTAPNPNDPWDYKWLNKNKMLRFYDGADGVKTGYTKTARRCLVSSATR 248

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL-KHQQTHRKDNLSSTSLKKSLMIKK 317
               I  V +         +K L+   +     TL    Q      ++    K +L  ++
Sbjct: 249 NGQQIAVVTLNDGDDWNDHRKLLDYSFANFPLTTLISKGQAIENGLVTGADFKYALAPEE 308

Query: 318 LKRTYSQFKKIDAKAHS 334
           + +   + K ++A+  S
Sbjct: 309 VGKVERRLKLVEARTGS 325


>gi|319406361|emb|CBI80002.1| penicillin-binding protein [Bartonella sp. AR 15-3]
          Length = 367

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 93/292 (31%), Positives = 151/292 (51%), Gaps = 11/292 (3%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL 93
           LF S I+  + S   A P  S   +D    ++    Q  E  YPASLTK+M  Y+IF  +
Sbjct: 8   LFFSFILSMIGSLTLAHPFIS---VDATTGRILKHNQAFERWYPASLTKLMMTYVIFRAM 64

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            + ++  +  I +SK AA         K  +  T +  +   + +S ND++ A  E ISG
Sbjct: 65  STGEISPHKHITISKNAAQAPAINSGYKAGSVLTLDTALKITLVKSTNDLAIAISEAISG 124

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S++ F   M+ +A+++GM  T + N SGL + N  +TARD A+L + +R+ FPQY  YFS
Sbjct: 125 SQEAFVKQMNAEAQRLGMFGTNFTNTSGLPNPNNYSTARDIALLAVQIRREFPQYTHYFS 184

Query: 214 IRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           I    + N  +I +N N L+ +   IDG+KTG+   SGFN+V S       I+ V++G  
Sbjct: 185 IPAIDFGNGQKIQSNSNNLIGRFDGIDGMKTGFICASGFNLVASATRNKRTIIVVILGSD 244

Query: 272 TSQERDQKALELITSFLEKK-----TLKHQQTHRKDNLSSTSLKKSLMIKKL 318
           +  +R++KA EL+ +    K     TL   + +       T +++ +   + 
Sbjct: 245 SINKREEKAAELLNAGFSDKGSPQSTLATLEPYGTKISQITDMRQQICTPEA 296


>gi|221639986|ref|YP_002526248.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
           KD131]
 gi|221160767|gb|ACM01747.1| Serine-type D-Ala-D-Ala carboxypeptidase precursor [Rhodobacter
           sphaeroides KD131]
          Length = 389

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 83/270 (30%), Positives = 142/270 (52%), Gaps = 12/270 (4%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYI 88
            +  IL L   + ++A +  A+  +   V DV  + +   K   EP  PAS++K+MTL +
Sbjct: 7   FLALILGLVTALPALAFDTRARAAW---VYDVTTHTVLLDKNAHEPLPPASMSKLMTLNM 63

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           +FE L+  ++ + T   VS  A     SK++++E+   T E+ I  +I  S ND      
Sbjct: 64  LFEALRDGRVTMETTFAVSTKAKQMGGSKMFVEERDRPTVEELIHGIIVNSGNDACVVVA 123

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E ++G+E  FA  M+ +AK +GM ++ + N+SG  D     +  D  IL + L + FP++
Sbjct: 124 EGLNGTESDFARAMTVRAKALGMTDSTFTNSSGWPDPGHRMSVHDLGILAVRLIEEFPEF 183

Query: 209 YKYFSIRKFRYRNRII---TNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSL-RYKD 260
           Y YFS  +F Y++R+     N N LL    N     DG+KTG+T+ +G+ +V S  +   
Sbjct: 184 YPYFSHTEFNYKDRVPSNANNRNPLLRLGPNGDWTADGLKTGHTQEAGYGLVGSAVQKDG 243

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEK 290
             IV V+ G+ T  +R Q+  +++     +
Sbjct: 244 RRIVFVLTGLATEADRAQEGEQIVNWAFRQ 273


>gi|126698888|ref|YP_001087785.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Clostridium difficile 630]
 gi|254974836|ref|ZP_05271308.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Clostridium difficile QCD-66c26]
 gi|255092224|ref|ZP_05321702.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Clostridium difficile CIP 107932]
 gi|255306248|ref|ZP_05350420.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Clostridium difficile ATCC 43255]
 gi|255313963|ref|ZP_05355546.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Clostridium difficile QCD-76w55]
 gi|255516643|ref|ZP_05384319.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Clostridium difficile QCD-97b34]
 gi|255649742|ref|ZP_05396644.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Clostridium difficile QCD-37x79]
 gi|260682898|ref|YP_003214183.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196]
 gi|260686496|ref|YP_003217629.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291]
 gi|306519851|ref|ZP_07406198.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-32g58]
 gi|115250325|emb|CAJ68147.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile]
 gi|260209061|emb|CBA62190.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Clostridium difficile CD196]
 gi|260212512|emb|CBE03449.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Clostridium difficile R20291]
          Length = 387

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 85/321 (26%), Positives = 152/321 (47%), Gaps = 16/321 (4%)

Query: 28  IQLMGKILFLSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQDEP-RYPASLTK 82
           + ++  +  LS    +      A        S+I++DV   Q+   K       PAS+TK
Sbjct: 9   LAILIALTPLSFSFANNKENADANQLNISSKSAILMDVGSGQILYEKDAHKKLPPASVTK 68

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT+ +I E L S K+ L+ ++ VS+TA++   S+++L+       +  +  +   SAND
Sbjct: 69  VMTMLLIVEALDSGKIKLDDEVQVSETASSMGGSQIFLEPGETQKVDTLLKGIAVASAND 128

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
              A  E ++GS + F   M+ KAK++ M +T + N +GL   N  T+A D A++   L 
Sbjct: 129 ACVAMAEHLAGSVEGFVDRMNAKAKELNMNDTHFANTNGLPVANHYTSAHDIALMSRELL 188

Query: 203 KNFPQYYKYFSIR--KFRYRNRIIT----NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           K      KY +    K     + +T    N NKL+       G+KTG+T+ + + +  S 
Sbjct: 189 K-HEMISKYLTTWMDKVVVGKKQVTVGLANTNKLIKHYQGATGVKTGFTQEAKYCLSASA 247

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHRKDNLSSTSLKKSLMI 315
           +  +  +VA  +G  TS ER   A  L+       +++K     + DN+++ +L K+   
Sbjct: 248 KRGNTHLVAATLGAETSPERFNDASSLLNYGFANYESVK--LCSKGDNIATLTLDKA-DE 304

Query: 316 KKLKRTYSQFKKIDAKAHSTQ 336
            K+K    +      K  S++
Sbjct: 305 NKVKLVAKEDLNALIKKGSSK 325


>gi|258516321|ref|YP_003192543.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780026|gb|ACV63920.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 373

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/265 (28%), Positives = 125/265 (47%), Gaps = 15/265 (5%)

Query: 34  ILFLSIIMISM-ASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFE 91
           +L L++  + + A+        S++++DV   Q+   K   + R PAS TK++T  +  E
Sbjct: 13  LLLLNVYCLPVQAAYSPPVAAESAVLMDVGSGQVLYQKNAFQRRPPASTTKILTALLALE 72

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
                   L   + +SKTAA+   S +YL+     T E+ I   + +S ND   A  E I
Sbjct: 73  GGD-----LGQVVTISKTAASTGESSIYLQAGENLTLEELIYGALLKSGNDSCVAIAEQI 127

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +G+E  F  LM+ KAK++G  ++ + N +GL  +   +TA D A L     +N P +   
Sbjct: 128 AGTEANFVQLMNEKAKQMGAMDSHFVNCNGLPAEGHYSTAYDLAKLTCYALQN-PVFNTV 186

Query: 212 FSIRKFRYRN----RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            S R+   R     R + N N+LL+     DG+KTG T  +G  +V S    +  +V+VV
Sbjct: 187 VSTREKVIRGPGWQRHLQNTNQLLDTYTFADGVKTGTTNAAGPCLVASATRDNRRLVSVV 246

Query: 268 MGMPTSQERDQKALELITSFLEKKT 292
           +       R   +  L+       +
Sbjct: 247 LHSAN---RYGDSKSLLEYGFNNFS 268


>gi|253682546|ref|ZP_04863343.1| D-alanyl-D-alanine carboxypeptidase DacF [Clostridium botulinum D
           str. 1873]
 gi|253562258|gb|EES91710.1| D-alanyl-D-alanine carboxypeptidase DacF [Clostridium botulinum D
           str. 1873]
          Length = 391

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/326 (25%), Positives = 153/326 (46%), Gaps = 15/326 (4%)

Query: 25  QRNIQLMGKILFLS---IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASL 80
           +  + L+  +LF+S   ++ +  A         + ++++ +  ++   K   E   PAS+
Sbjct: 6   KSLVCLLLAVLFISQIFVVNVKAAEGSLDVEAKAGLLMEPSTGKIIYKKNVHEKFAPASV 65

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALIT 137
           TK+MT+ +  E + S K+ L+  + VS+ A        S + L      T E  +  +  
Sbjct: 66  TKIMTMLLTMEAIDSGKIKLSDTVVVSENAKKMGKNGSSSMLLDTGEVRTVEDLLKGVAI 125

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND +TA  E+I GSE +F  +M+ +A+++GM++T +KN  GL  +  +T+A D +I+
Sbjct: 126 ASGNDAATALAEYIGGSESRFVEMMNKRAQQLGMKDTTFKNCHGLSKEGHLTSAYDISIM 185

Query: 198 GILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
              L K   +  KY      +I + R     + NHNKL+      DG+KTG+T  + + I
Sbjct: 186 SCELLK-HKKILKYSGTYMETISEGRKNPIELVNHNKLVRFYKGCDGLKTGFTNEAKYCI 244

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
             +    +  ++A+++G PT + R++ A  L+     K   K   T   D       KK 
Sbjct: 245 SATAVRNNIRMLAIIVGAPTYKVRNRDASMLMNYGFSKFESKKIVTKDSDVEKIILDKKG 304

Query: 313 --LMIKKLKRTYSQFKKIDAKAHSTQ 336
                 K K   +   +  +K   T+
Sbjct: 305 EKFFFAKAKNDLNVVLERGSKNKITK 330


>gi|163760085|ref|ZP_02167168.1| putative penicillin-binding protein/D-alanyl-D-alanine
           carboxypeptidase [Hoeflea phototrophica DFL-43]
 gi|162282484|gb|EDQ32772.1| putative penicillin-binding protein/D-alanyl-D-alanine
           carboxypeptidase [Hoeflea phototrophica DFL-43]
          Length = 289

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 112/278 (40%), Positives = 166/278 (59%), Gaps = 9/278 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHA-------KPKYSSIVIDVNKNQMTG-FKQDEPR 75
            + +I +     F+S    S  S   A         KY++IV+D    +M      +E R
Sbjct: 12  CKLSISIFLVAAFVSACASSGGSIDEAVYSVAPTTAKYAAIVVDEKSGKMLYGANVNELR 71

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPASLTKMMT+Y++FE +   ++  +T IP+S+ AA + PSKL LK       +  I  L
Sbjct: 72  YPASLTKMMTVYMLFEAMDQGRISRDTPIPISRNAARRPPSKLGLKAGQSIPVDTAIRVL 131

Query: 136 ITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           + +SANDV+TA GEF+ G SE +FA +M+ KA+ +GM  T +KNASGL D +Q++TA D 
Sbjct: 132 VVKSANDVATAVGEFLGGGSEARFADMMTAKARTLGMSRTTFKNASGLPDPDQVSTATDM 191

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
           A L I LR+NFP +Y YF   +     R I  HNK +  +   DG+KTGYTR SGFN+ T
Sbjct: 192 ARLSIALRRNFPHHYSYFGQTEVTVAGRTIKGHNKAMKMIPGADGLKTGYTRASGFNLAT 251

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           S+R++   +V VVMG   +  RD +  +L+++++++  
Sbjct: 252 SVRHQGKSVVGVVMGEDKASIRDARMTQLMSAYIKRAK 289


>gi|164688533|ref|ZP_02212561.1| hypothetical protein CLOBAR_02178 [Clostridium bartlettii DSM
           16795]
 gi|164602946|gb|EDQ96411.1| hypothetical protein CLOBAR_02178 [Clostridium bartlettii DSM
           16795]
          Length = 383

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/272 (28%), Positives = 137/272 (50%), Gaps = 11/272 (4%)

Query: 30  LMGKILFLSIIMISMASELHAK---PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMT 85
            +  IL +S   +  A +  A       S++++DV   ++   K   E   PAS+TK+MT
Sbjct: 8   FLAIILIISQSTLVFADKNGANLNLKCKSAVLMDVTSGKVLYEKNCHEKLPPASVTKVMT 67

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           + +I E ++S K+ L  ++ VS+TA++   S+++L+     T +  +  +   SAND   
Sbjct: 68  MLLICEAVESNKIKLTDEVTVSETASSMGGSQIFLEPNETQTVDTLLKGIAVASANDACV 127

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E+I GS + F  +M+NKAK++GM++T + N +GL   N  T+A D A++   L K  
Sbjct: 128 AMAEYIGGSIEGFVDMMNNKAKELGMKDTNFVNTNGLPVDNHYTSAYDIALMSRELLK-H 186

Query: 206 PQYYKYFSIRKFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
               KY +    +           + N NK++   +   G+KTG+T  + + +  S +  
Sbjct: 187 EMIEKYLTTWMDKVVVGKKQATIGLANTNKMIKYYNGATGVKTGFTGEAKYCVSASAKRG 246

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
              +V+VV+   TSQER + A  L+       
Sbjct: 247 KTHLVSVVLRGETSQERFKDASTLLDYGFANY 278


>gi|255100309|ref|ZP_05329286.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Clostridium difficile QCD-63q42]
          Length = 387

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 85/321 (26%), Positives = 152/321 (47%), Gaps = 16/321 (4%)

Query: 28  IQLMGKILFLSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQDEP-RYPASLTK 82
           + ++  +  LS    +      A        S+I++DV   Q+   K       PAS+TK
Sbjct: 9   LAILIALTPLSFSFANNKENADANQLNISSKSAILMDVGSGQILYEKDAHKKLPPASVTK 68

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT+ +I E L S K+ L+ ++ VS+TA++   S+++L+       +  +  +   SAND
Sbjct: 69  VMTMLLIVEALDSGKIKLDDEVQVSETASSMGGSQIFLEPGETQKVDTLLKGIAVASAND 128

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
              A  E ++GS + F   M+ KAK++ M +T + N +GL   N  T+A D A++   L 
Sbjct: 129 ACVAMAEHLAGSVEGFVDRMNAKAKELNMNDTHFANTNGLPVANHYTSAHDIALMSRELL 188

Query: 203 KNFPQYYKYFSIR--KFRYRNRIIT----NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           K      KY +    K     + +T    N NKL+       G+KTG+T+ + + +  S 
Sbjct: 189 K-HEMISKYLTTWMDKVVVGKKQVTVGLANTNKLIKHYQGATGVKTGFTQEAKYCLSASA 247

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHRKDNLSSTSLKKSLMI 315
           +  +  +VA  +G  TS ER   A  L+       +++K     + DN+++ +L K+   
Sbjct: 248 KRGNTHLVAATLGAETSPERFNDASSLLNYGFANYESVK--LCSKGDNIATLTLDKA-DE 304

Query: 316 KKLKRTYSQFKKIDAKAHSTQ 336
            K+K    +      K  S++
Sbjct: 305 NKVKLVAKEDLNTLIKKGSSK 325


>gi|313901633|ref|ZP_07835069.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313468095|gb|EFR63573.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 521

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 121/256 (47%), Gaps = 17/256 (6%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLH 99
           +++    + A    +++++D    Q+   +     R PAS TK++T  +  E+      +
Sbjct: 176 VVAPPPSIDAA---AAVLMDQASGQVLFARNPHQRRAPASTTKILTAIVALEFG-----N 227

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           L+  + VS+ AA    S + L     ++  + +  L+  S ND + A  E I+GSE  FA
Sbjct: 228 LDDVVTVSEHAAATEGSTMDLVAGERYSLRELLWGLMLESGNDAAVAIAEHIAGSEAAFA 287

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            LM+  A ++G+++T + N  GLHD    T+A D A++      N           K   
Sbjct: 288 RLMNETALRLGLRDTHFTNPHGLHDPAHFTSAYDLAVMTRYALANDYFARLVCQPEKVLC 347

Query: 220 RN-----RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           R      RI+++ N+LL     I G+KTG T  +G  +V+S   +   ++AVV+    S 
Sbjct: 348 RGDGDWVRILSSTNRLLWYHEWIRGVKTGTTGAAGPCLVSSGELEGRRLIAVVL---DSG 404

Query: 275 ERDQKALELITSFLEK 290
           +R   +  L+    ++
Sbjct: 405 DRWADSRALLEWGFDQ 420


>gi|118477901|ref|YP_895052.1| D-alanyl-D-alanine carboxypeptidase A [Bacillus thuringiensis str.
           Al Hakam]
 gi|118417126|gb|ABK85545.1| D-Ala-D-Ala carboxypeptidase A, Serine peptidase, MEROPS family S11
           [Bacillus thuringiensis str. Al Hakam]
          Length = 450

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 82/353 (23%), Positives = 160/353 (45%), Gaps = 36/353 (10%)

Query: 12  KTFLTYPYGSIYIQRNIQLMGKI-LFLSIIMISMASELHAKPKY-----SSIVIDVNKNQ 65
           K         ++ +R I ++  + LF SI +IS ++             S+++++ N  +
Sbjct: 20  KILEVTEVKGMFCKRFIAIITVLTLFCSITVISGSASAETVSAIEVEAGSAVLVEANSGK 79

Query: 66  MTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYL 120
           +   K  DE    AS+TKMM+ Y++ E +++ KL  N ++ +S+ A      ++ S + L
Sbjct: 80  ILYEKNADELLAIASMTKMMSEYLVHEAVENGKLKWNQKVKISEYAYKISQDRSLSNVPL 139

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           +    +T ++   A++  SAN  + A  E I+G E  F  +M++K+K+ GM+N  + N++
Sbjct: 140 ENGGSYTVKELYEAMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNST 199

Query: 181 GL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----N 221
           GL               D+    +ARD AIL   L ++FP+      I K  ++      
Sbjct: 200 GLTNHDLKGHHPEGTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQQGGKYP 259

Query: 222 RIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
             +TN N +L     +   +DG+KTG T  +G     +       +++VV+   +   R 
Sbjct: 260 IDMTNFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTAERNGMRLISVVIKANSHAARF 319

Query: 278 QKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
            +  +L          + ++ + KD++ +      +   K K    Q K+  +
Sbjct: 320 DETKKLYDYGFAN--FEVRKVNEKDSVVNGHETVRIANAKDKDVVVQTKQAVS 370


>gi|255655303|ref|ZP_05400712.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Clostridium difficile QCD-23m63]
 gi|296451287|ref|ZP_06893027.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile
           NAP08]
 gi|296880361|ref|ZP_06904324.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile
           NAP07]
 gi|296259893|gb|EFH06748.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile
           NAP08]
 gi|296428602|gb|EFH14486.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile
           NAP07]
          Length = 387

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 81/290 (27%), Positives = 143/290 (49%), Gaps = 12/290 (4%)

Query: 55  SSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I++DV   Q+   K       PAS+TK+MT+ +I E L S  + L+ ++ VS+TA++ 
Sbjct: 40  SAILMDVGSGQILYEKDAHKKLPPASVTKVMTMLLIVEALDSGDIKLDDEVQVSETASSM 99

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+       +  +  +   SAND   A  E ++GS + F   M+ KAK++ M +
Sbjct: 100 GGSQIFLEPGETQKVDTLLKGIAVASANDACVAMAEHLAGSVEGFVDRMNAKAKELNMND 159

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIIT----NH 227
           T + N +GL   N  T+A D A++   L K      KY +    K     + +T    N 
Sbjct: 160 THFANTNGLPVANHYTSAHDIALMSRELLK-HEMISKYLTTWMDKVVVGKKQVTVGLANT 218

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           NKL+       G+KTG+T+ + + +  S +  +  +VA  +G  TS ER   A  L+   
Sbjct: 219 NKLIKHYQGATGVKTGFTQEAKYCLSASAKRGNTHLVAATLGAETSPERFNDASSLLNYG 278

Query: 288 L-EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
               +++K     + DN+++ +L K+    K+K    +      K  S++
Sbjct: 279 FANYESVK--LCSKGDNIATLTLDKA-DENKVKLVAKEDLNALIKKGSSK 325


>gi|83949599|ref|ZP_00958332.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius nubinhibens ISM]
 gi|83837498|gb|EAP76794.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius nubinhibens ISM]
          Length = 403

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/266 (27%), Positives = 131/266 (49%), Gaps = 8/266 (3%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           + A+        ++ V+DV    +   K  D+P  PAS++K+MTLY+ FE ++  +L + 
Sbjct: 22  TQAARAFDTRATAAYVVDVGTGTVLLAKNADQPLPPASMSKLMTLYVTFEAIRDGRLSMT 81

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFA 159
             +PVS  AA    S L+L+     + E  +  +I  S ND      E +S  G+E  FA
Sbjct: 82  ETLPVSAHAARYGGSTLFLQAGERVSVEDLLRGIIVLSGNDACVVLAESLSPDGTEAGFA 141

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             M+ +A+ +GM N+ + N++G        + RD  +L   L ++FP++Y  F+  +F +
Sbjct: 142 RFMTRRAQNMGMTNSAFTNSNGWPAPGHRMSMRDLGLLARKLIEDFPEFYPMFAEEEFLF 201

Query: 220 RNRII---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
             +      N N LL      DG+KTG+T  +G+ +V S       ++ V+ G+ +++ R
Sbjct: 202 DEKESQNRYNRNPLLGLGIGADGLKTGHTAEAGYGLVGSAVQNGRRVIFVISGLASAEAR 261

Query: 277 DQKALELITSFLEKKTLKHQQTHRKD 302
            ++A  ++     +     QQ  R  
Sbjct: 262 AEEAEAIVNWAFRQ--FAEQQVVRGG 285


>gi|163939795|ref|YP_001644679.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
 gi|229132823|ref|ZP_04261668.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           BDRD-ST196]
 gi|163861992|gb|ABY43051.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
 gi|228650650|gb|EEL06640.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           BDRD-ST196]
          Length = 317

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/259 (28%), Positives = 139/259 (53%), Gaps = 16/259 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E+ AK   ++I+ID +  ++      +E   PAS++KMMT Y++ E + + K+H   
Sbjct: 59  IPPEIDAK---AAIIIDASNGEVIYQNNENEAVAPASMSKMMTAYLVLESIHNGKVHWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  +A    +K+ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM
Sbjct: 116 PVKISAKSAQTEGAKIPMQANDTLTVKDLYHALMIESANNSAVALAEHVAKTEKNFVQLM 175

Query: 163 SNKAKKIGMQN-TIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           + KAK++ M +   + NASGL + +      TA D + L   L K++P+  +   +R+ +
Sbjct: 176 NEKAKQLEMSDKAKFANASGLQEPDGSETKMTAADVSKLAYHLIKDYPEILEVTHLRQSQ 235

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  +TN N++LNK         IDG+KTG+T ++G+    + +  D+ ++ VVMG 
Sbjct: 236 LAFNNINVTNTNEMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDNRVITVVMGT 295

Query: 271 PTSQERDQKALELITSFLE 289
            +  +R  +  +L++   +
Sbjct: 296 KSKTKRFTETNKLMSYAFQ 314


>gi|316934064|ref|YP_004109046.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris DX-1]
 gi|315601778|gb|ADU44313.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris DX-1]
          Length = 413

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 130/285 (45%), Gaps = 23/285 (8%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYS-----------------SIVIDVNKNQMTGFKQ 71
           + M + L   +I +++ +        S                 +I++D     +   K 
Sbjct: 12  RFMMRGLLAGLIAVALGAGPATAANQSVQGAKKEEGGFEAQAPTAILLDAESGSVLFEKN 71

Query: 72  -DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-----QNPSKLYLKEKTY 125
            DE R P+S+ K+MT+ ++F  L++  L L  +  VS+ +          S ++ +  + 
Sbjct: 72  ADELRAPSSMMKLMTVEVVFHLLKTGALQLAQEYRVSENSWRYGGAPAGGSTMFAEIHSS 131

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            + +  +   I +S ND      E I+GSE  F   M+ +A+++G+  + + N++GL + 
Sbjct: 132 ISVDNLLRGAIIQSGNDSCMVLAEGIAGSEAAFVERMTKRARELGLTQSTFGNSTGLPNP 191

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
           +   + R+ A L   +   +P  Y  F  ++F +     TN N LLN +   DG KTG+T
Sbjct: 192 DNKMSVRELARLARHIILTYPDMYALFGEKEFTWNKIRQTNRNPLLNALPGADGFKTGFT 251

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +  G+ +V S       ++ VV G+ ++ +R  +A +L+      
Sbjct: 252 KEGGYGLVGSAVQNGMRLIVVVNGLESADDRASEAKKLLEWGFRN 296


>gi|254369366|ref|ZP_04985378.1| serine-type D-Ala-D-Ala carboxypeptidase [Francisella tularensis
           subsp. holarctica FSC022]
 gi|157122316|gb|EDO66456.1| serine-type D-Ala-D-Ala carboxypeptidase [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 444

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 85/334 (25%), Positives = 138/334 (41%), Gaps = 59/334 (17%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + + +D     +   K  D  R PASLTK+MT YI+   +++  L  +T IP+S+ AA
Sbjct: 54  APAWVTMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENAA 113

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   SK+Y+K     +    +  +   S ND + A  E+I G+ + F  LM+  AK IGM
Sbjct: 114 STGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIGM 173

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII------- 224
            NT + N  GL    Q TTA D A+L      NFP+ YK +  +   +            
Sbjct: 174 NNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIAD 233

Query: 225 ---------------------------------------------TNHNKLLNKMHNIDG 239
                                                         N N+LL      DG
Sbjct: 234 RKQCLPKFDRATGNVIESYTVKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGADG 293

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK------KTL 293
           +KTG+T  +G+ +V+S++   +  ++VV+G  +S +RD ++ +L+   L K         
Sbjct: 294 MKTGHTDAAGYCLVSSVKQDGERFISVVLGTTSSAKRDSESAKLLRYALSKYENVLLYKA 353

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
               T   DN+ +    + L +   +  Y    K
Sbjct: 354 NSPVTISADNIPNAKAGQKLTVASNQNIYKTVPK 387


>gi|89256395|ref|YP_513757.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein)
           family protein [Francisella tularensis subsp. holarctica
           LVS]
 gi|115314839|ref|YP_763562.1| serine-type D-Ala-D-Ala carboxypeptidase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|156502486|ref|YP_001428551.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167010417|ref|ZP_02275348.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367733|ref|ZP_04983754.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein)
           [Francisella tularensis subsp. holarctica 257]
 gi|290953818|ref|ZP_06558439.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312829|ref|ZP_06803561.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89144226|emb|CAJ79499.1| D-alanyl-D-alanine carboxypeptidase (Penicillin binding protein)
           family protein [Francisella tularensis subsp. holarctica
           LVS]
 gi|115129738|gb|ABI82925.1| serine-type D-Ala-D-Ala carboxypeptidase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253544|gb|EBA52638.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein)
           [Francisella tularensis subsp. holarctica 257]
 gi|156253089|gb|ABU61595.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 444

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 85/334 (25%), Positives = 138/334 (41%), Gaps = 59/334 (17%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + + +D     +   K  D  R PASLTK+MT YI+   +++  L  +T IP+S+ AA
Sbjct: 54  APAWVTMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENAA 113

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   SK+Y+K     +    +  +   S ND + A  E+I G+ + F  LM+  AK IGM
Sbjct: 114 STGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIGM 173

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII------- 224
            NT + N  GL    Q TTA D A+L      NFP+ YK +  +   +            
Sbjct: 174 NNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIAD 233

Query: 225 ---------------------------------------------TNHNKLLNKMHNIDG 239
                                                         N N+LL      DG
Sbjct: 234 RKQCLPKFDRATGNVIESYTVKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGADG 293

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK------KTL 293
           +KTG+T  +G+ +V+S++   +  ++VV+G  +S +RD ++ +L+   L K         
Sbjct: 294 MKTGHTDAAGYCLVSSVKQDGERFISVVLGTTSSAKRDSESAKLLRYALSKYENVLLYKA 353

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
               T   DN+ +    + L +   +  Y    K
Sbjct: 354 NSPVTISADNIPNAKAGQKLTVASNQNIYKTVPK 387


>gi|220932948|ref|YP_002509856.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Halothermothrix orenii H 168]
 gi|219994258|gb|ACL70861.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Halothermothrix orenii H 168]
          Length = 388

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 87/323 (26%), Positives = 160/323 (49%), Gaps = 11/323 (3%)

Query: 24  IQRNIQLMGKILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLT 81
           +++    +  I+   I+M++ A +        ++I+ID    Q+   K  D+   PAS+T
Sbjct: 1   MKKIATTVAIIIVSLILMVNNARAGGFDIGVDAAILIDAESGQVLYEKNADKKLPPASIT 60

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MTL +  E +    + L++ + VS+ A +   S++YL   T       + A+   SAN
Sbjct: 61  KIMTLLLTMEEVDKGNISLDSMVTVSQLAESMGGSQIYLAADTRLKLRDLLKAVTIASAN 120

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D   A  E ++G+E+ F   M+ +A+++GM+NT + N +GL  D    TTARD AI+   
Sbjct: 121 DACVAVAEAVAGTEENFVRWMNKRARELGMKNTHFSNTTGLPTDGEHYTTARDVAIMARE 180

Query: 201 LRKNFPQYYKYFSIRKF-----RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           L K  PQ  K+ SI          R  ++TN N+L+N    +DG+KTG+T  +G+ +  +
Sbjct: 181 LIK-HPQVLKWASIWVDYIDLPNGRKAMLTNTNRLINDYPGMDGLKTGHTDAAGYCLAAT 239

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLE--KKTLKHQQTHRKDNLSSTSLKKSL 313
            R     +++V+M   T +ER++    L+       +K +  ++ H+  N+   +  ++ 
Sbjct: 240 ARRNGMRLISVIMKGETEREREEATARLLDYGFNSFEKYIVLKKGHKVHNIEVPNGTRTS 299

Query: 314 MIKKLKRTYSQFKKIDAKAHSTQ 336
            + +         K   K   T+
Sbjct: 300 TVAETANDLKVVVKKGEKDLLTK 322


>gi|118497499|ref|YP_898549.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
           novicida U112]
 gi|195536192|ref|ZP_03079199.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
           novicida FTE]
 gi|118423405|gb|ABK89795.1| D-alanyl-D-alanine carboxypeptidase [Francisella novicida U112]
 gi|194372669|gb|EDX27380.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
           novicida FTE]
          Length = 444

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 84/334 (25%), Positives = 137/334 (41%), Gaps = 59/334 (17%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + + +D     +   K  D  R PASLTK+MT YI+   +++  L  +T +P+S+ AA
Sbjct: 54  APAWVAMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMVPISENAA 113

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   SK+Y+K     +    +  +   S ND + A  E+I G+ + F  LM+  AK IGM
Sbjct: 114 STGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQTAKAIGM 173

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII------- 224
            NT + N  GL    Q TTA D A+L      NFP+ YK +  +   +            
Sbjct: 174 NNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIAD 233

Query: 225 ---------------------------------------------TNHNKLLNKMHNIDG 239
                                                         N N+LL      DG
Sbjct: 234 RKQCLPKFDRATGNVIESYTVKGLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGADG 293

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK------KTL 293
           +KTG+T  +G+ +V+S +   +  ++VV+G  +S +RD ++ +L+   L K         
Sbjct: 294 MKTGHTDAAGYCLVSSAKQDSERFISVVLGTTSSAKRDSESAKLLRYALSKYENVLLYKA 353

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
               T   DN+ +    + L +   +  Y    K
Sbjct: 354 NSPVTISADNIPNAKAGQKLTVASNQNIYKTVPK 387


>gi|319783486|ref|YP_004142962.1| serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317169374|gb|ADV12912.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 434

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 80/303 (26%), Positives = 146/303 (48%), Gaps = 10/303 (3%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
               ++L       + +ID     +   K+ D+P  PAS+ K+MT+ ++F  ++S +L L
Sbjct: 69  APAGAQLFETKAAQAFMIDAETGTVLFSKEADKPIPPASMAKLMTMEVVFNAIKSGRLKL 128

Query: 101 NTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
           +    VS+ A  +       S ++ K K+    E  I  +  ++AND      E +SGSE
Sbjct: 129 DDTFVVSENAWRKGGAPSGTSTMFAKLKSSIRLEDLIQGVTVQAANDGCIVIAEGMSGSE 188

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             FA+ M+ +A++IG++ + + N++GL    Q TT R+ A L + L +++P +Y+YF+ +
Sbjct: 189 DNFAVQMTERARQIGLKTSTFVNSTGLPADGQQTTVRELAQLALHLWRDYPDFYRYFAQK 248

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
            F +      N N LL      DG+  G +  +GF IV SL +    ++A + G+ + +E
Sbjct: 249 DFTWNKISQRNRNPLLAMDIGADGLAVGASEAAGFGIVGSLSHNGTRVIAAMSGLASDKE 308

Query: 276 RDQKALELITSF---LEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
           R ++A +L+       EK  +  +     +       K  + + K K     F  I  + 
Sbjct: 309 RAEEARKLLDWGVRSFEKTEIFARDEVVGEAQVFGGAKSGVTL-KAKGPIDIFLPITNRD 367

Query: 333 HST 335
             T
Sbjct: 368 KLT 370


>gi|319404878|emb|CBI78479.1| penicillin-binding protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 368

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 94/292 (32%), Positives = 151/292 (51%), Gaps = 11/292 (3%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL 93
           LF   I+  M+S   A P  S   +D    ++    Q  E  YPASLTK+M  YIIF  +
Sbjct: 8   LFFFFILSIMSSLSLAHPFIS---VDATTGRILKHNQAFERWYPASLTKLMMTYIIFRAM 64

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            + K+  +  I +SK AA         K  +  T +  +   + +S ND++ A  E ISG
Sbjct: 65  STGKISPHKHITISKNAAQAPAINSGYKAGSVLTLDTALKITLVKSTNDLAIAISEAISG 124

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S++ F   M+ +A+++GM  T + N SGL + N  +TARD A+L + +R+ FPQY  YFS
Sbjct: 125 SQEAFVKQMNAEARRLGMFGTNFTNTSGLPNPNNYSTARDMALLAVQIRREFPQYTHYFS 184

Query: 214 IRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           I    + N  +I +N N L+ +   IDG+KTG+   SGFN+V S       I+ V++G  
Sbjct: 185 IPAIDFGNGKKIQSNSNNLIGRFDGIDGMKTGFICASGFNLVASATRNKRTIIVVILGSE 244

Query: 272 TSQERDQKALELITSFLEKK-----TLKHQQTHRKDNLSSTSLKKSLMIKKL 318
           +  +R++KA +L+ +    K     TL   + +       T +++ +   + 
Sbjct: 245 SINKREEKAAQLLNAGFSDKGSPQSTLATLEPYGTKISQITDMRQQICTPEA 296


>gi|261406005|ref|YP_003242246.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           sp. Y412MC10]
 gi|261282468|gb|ACX64439.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           sp. Y412MC10]
          Length = 394

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 75/279 (26%), Positives = 124/279 (44%), Gaps = 16/279 (5%)

Query: 28  IQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           + ++  I  L +  + + ++    P     ++ +IDV   +M   K  DE    ASLTK+
Sbjct: 13  LSMLIAICCLLVTAVPVHADHEQGPSNHAQAAALIDVTSGRMLYSKNGDERLRIASLTKI 72

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT  +  E+ +     L+ ++ VSK A  +  S ++LK     T E  +  L+ RS ND 
Sbjct: 73  MTAIVAIEHGK-----LDDRVKVSKNAFAKEGSSIFLKLGEEMTLENLLYGLMLRSGNDA 127

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           +TA  E + G+E+ F +LM+ KA  +GM N+ + N  GL      ++A D A L     K
Sbjct: 128 ATAIAEHVGGTEEGFVLLMNEKAASLGMTNSHFMNPHGLDHDEHYSSAHDVAKLTAYALK 187

Query: 204 NFPQYYKYFSIRKFRYRN------RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
           N P + +       +  N          N NK+L      DG+KTGYT+ +   +V+S  
Sbjct: 188 N-PVFSEIVKTPTKKAPNPNEAWDYKWDNKNKMLRFYEGADGVKTGYTKKAFRCLVSSAT 246

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQ 296
                I AV +            L+   +    K +  +
Sbjct: 247 RNGQQIAAVTLNDGNDWNDHSNMLDYGFAHFPLKKVTEK 285


>gi|329929810|ref|ZP_08283486.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5]
 gi|328935788|gb|EGG32249.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5]
          Length = 394

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 75/279 (26%), Positives = 124/279 (44%), Gaps = 16/279 (5%)

Query: 28  IQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           + ++  I  L +  + + ++    P     ++ +IDV   +M   K  DE    ASLTK+
Sbjct: 13  LSMLIAICCLLVTAVPVHADHEQGPSNHAQAAALIDVTSGRMLYSKNGDERLRIASLTKI 72

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT  +  E+ +     L+ ++ VSK A  +  S ++LK     T E  +  L+ RS ND 
Sbjct: 73  MTAIVAIEHGK-----LDDRVKVSKNAFAKEGSSIFLKLGEEMTLENLLYGLMLRSGNDA 127

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           +TA  E + G+E+ F +LM+ KA  +GM N+ + N  GL      ++A D A L     K
Sbjct: 128 ATAIAEHVGGTEEGFVLLMNEKAASLGMTNSHFMNPHGLDHDEHYSSAHDVAKLTAYALK 187

Query: 204 NFPQYYKYFSIRKFRYRN------RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
           N P + +       +  N          N NK+L      DG+KTGYT+ +   +V+S  
Sbjct: 188 N-PVFSEIVKTPTKKAPNPNEAWDYKWDNKNKMLRFYEGADGVKTGYTKKAFRCLVSSAT 246

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQ 296
                I AV +            L+   +    K +  +
Sbjct: 247 RNGQQIAAVTLNDGNDWNDHSNMLDYGFAHFPLKKVTEK 285


>gi|241668486|ref|ZP_04756064.1| Serine-type D-Ala-D-Ala carboxypeptidase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254877020|ref|ZP_05249730.1| D-alanyl-D-alanine carboxypeptidase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254843041|gb|EET21455.1| D-alanyl-D-alanine carboxypeptidase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 444

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 82/334 (24%), Positives = 137/334 (41%), Gaps = 59/334 (17%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + + ++     +   K  D  R PASLTK+MT YI+   +++  L  +T +P+S+ AA
Sbjct: 54  APAWVAMNYRTGDIVSQKNMDVRRPPASLTKIMTSYIVASEIKAGNLSWDTMVPISEKAA 113

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   SK+Y+K     + +  +  +   S ND + A  E+I G+ + F  LM+  AK IGM
Sbjct: 114 STGGSKMYVKAGAKVSVKNLVTGMDVVSGNDATIALAEYIGGTAEAFTDLMNQTAKAIGM 173

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII------- 224
            NT + N  GL    Q TTA D A+L      NFP  YK +  R   +            
Sbjct: 174 NNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPDAYKIYDDRGLVWNATQQESVSIAD 233

Query: 225 ---------------------------------------------TNHNKLLNKMHNIDG 239
                                                         N N+LL      DG
Sbjct: 234 RKQCLPKFDRSSGNVLESFSAKGLDSQAQDKCSKLFPKGDNFVLQNNRNRLLFTFDGADG 293

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK------KTL 293
           +KTG+T  +G+ +V+S +   +  ++VV+G  +S +RD ++ +L+   + K         
Sbjct: 294 MKTGHTDAAGYCLVSSAKQDGERFISVVLGTSSSAKRDSESSKLLRYAISKYENVLLYKA 353

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
               T   DN+ +    + + +   +  Y    K
Sbjct: 354 NSPVTISADNIPNAKAGQKITVASTQNIYQTVPK 387


>gi|331269461|ref|YP_004395953.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum
           BKT015925]
 gi|329126011|gb|AEB75956.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum
           BKT015925]
          Length = 379

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 85/320 (26%), Positives = 153/320 (47%), Gaps = 19/320 (5%)

Query: 33  KILFLS---IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
            ILF+S   ++ +  A         + I+++ +  ++   K   E   PAS+TK+MT+ +
Sbjct: 2   AILFISQICVVNVKAAEGSLDVEAKAGILMEPSTGKVVFEKNVHEKFAPASVTKIMTMLL 61

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVST 145
             E + S K+ L   + VS+ A        S + L      T E  +  +   S ND +T
Sbjct: 62  TMEAIDSGKIKLTDTVVVSENAKKMGKNGSSSMLLDTGEVRTVEDLLKGVAIASGNDAAT 121

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E+I GSE  F  +M+ +A+++GM++T +KN  GL  +  +T+A D +I+   L K  
Sbjct: 122 ALAEYIGGSESSFVEMMNKRAQQLGMKDTTFKNCHGLSKEGHLTSAYDISIMSRELLK-H 180

Query: 206 PQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
            +  KY      +I + R +   + NHNKL+      DG+KTG+T  + + I  +    +
Sbjct: 181 KKILKYSGTYMETISEGRKKPIELVNHNKLVRFYKGCDGLKTGFTNEAKYCISATAVRNN 240

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKD-NLSSTSLKK---SLMIK 316
             ++A+++G PT + R++ A  L+     K   + ++   KD ++   SL K        
Sbjct: 241 IRMLAIIVGAPTYKVRNRDASMLMNYGFSK--FESKKIVTKDSDVEKISLDKKGEKFFFA 298

Query: 317 KLKRTYSQFKKIDAKAHSTQ 336
           K K  ++   +   K   T+
Sbjct: 299 KAKNDFNVVVERGEKNKITK 318


>gi|167627934|ref|YP_001678434.1| Serine-type D-Ala-D-Ala carboxypeptidase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167597935|gb|ABZ87933.1| Serine-type D-Ala-D-Ala carboxypeptidase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 444

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 82/334 (24%), Positives = 137/334 (41%), Gaps = 59/334 (17%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + + ++     +   K  D  R PASLTK+MT YI+   +++  L  +T +P+S+ AA
Sbjct: 54  APAWVAMNYRTGDIVSQKNMDVRRPPASLTKIMTSYIVASEIKAGNLSWDTMVPISEKAA 113

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   SK+Y+K     + +  +  +   S ND + A  E+I G+ + F  LM+  AK IGM
Sbjct: 114 STGGSKMYVKAGAKVSVKNLVTGMDVVSGNDATIALAEYIGGTAEAFTDLMNQTAKAIGM 173

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII------- 224
            NT + N  GL    Q TTA D A+L      NFP  YK +  R   +            
Sbjct: 174 NNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPDAYKIYDDRGLVWNATQQESVSIAD 233

Query: 225 ---------------------------------------------TNHNKLLNKMHNIDG 239
                                                         N N+LL      DG
Sbjct: 234 RKQCLPKFDRSSGNVLESFSAKGLDSQAQDKCAKLFPKGDNFVLQNNRNRLLFTFDGADG 293

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK------KTL 293
           +KTG+T  +G+ +V+S +   +  ++VV+G  +S +RD ++ +L+   + K         
Sbjct: 294 MKTGHTDAAGYCLVSSAKQDGERFISVVLGTSSSAKRDSESSKLLRYAISKYENVLLYKA 353

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
               T   DN+ +    + + +   +  Y    K
Sbjct: 354 NSPVTISADNIPNAKAGQKITVASTQNIYQTVPK 387


>gi|289578077|ref|YP_003476704.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           italicus Ab9]
 gi|297544350|ref|YP_003676652.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|289527790|gb|ADD02142.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           italicus Ab9]
 gi|296842125|gb|ADH60641.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 417

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 78/322 (24%), Positives = 151/322 (46%), Gaps = 27/322 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQDEPR-YPAS 79
           +++ +  +  +  L + +  + + + + P+    +++++D    Q+   K    R YPAS
Sbjct: 1   MKKMVASLLILFILVVQITPVYANVPSPPEIVGPTAVLMDFTTGQVLYDKNMHKRMYPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
            TK++T  I  E     K +LN  +  S      + + ++L      T EQ + A++  S
Sbjct: 61  TTKILTAIIAIE-----KGNLNDIVTASDNVTKIDGNSIFLSPGEQLTLEQLLYAIMLES 115

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AND + A  E I GS + FA +M+ KAK+IG  N+ + N +GL D+N  +T  D A++  
Sbjct: 116 ANDAAIAIAEHIGGSVENFAKMMNEKAKEIGAYNSHFVNPNGLPDENHYSTPYDMALIAR 175

Query: 200 LLRKNFPQYYKYFSIRKFRYRN-------RIITNHNKLLN----KMHNIDGIKTGYTRNS 248
              +N P++ K  +   ++          R +   N+L+     +    DG+KTGYT  +
Sbjct: 176 YAMQN-PEFRKIVTTIHYQIPPTNKFDKVRDLWLSNRLIKPSSFRYEGADGVKTGYTVAA 234

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
           G  +  S   +   +++V+MG   +       ++L+    +  +L  ++T + + ++   
Sbjct: 235 GQVLAASATREGRRLISVIMGDQGTNI-WTDTIKLLDYGFQNFSLV-KKTEKGEVVTYID 292

Query: 309 LKKS----LMIKKLKRTYSQFK 326
           L KS     +I K    Y   K
Sbjct: 293 LGKSHFKLPLIAKEDFYYEVPK 314


>gi|42523517|ref|NP_968897.1| hypothetical protein Bd2044 [Bdellovibrio bacteriovorus HD100]
 gi|39575723|emb|CAE79890.1| dacA [Bdellovibrio bacteriovorus HD100]
          Length = 286

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 77/262 (29%), Positives = 142/262 (54%), Gaps = 9/262 (3%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A  L +    S +++D +  Q+     +D+   PASLTK+MT Y++F  ++  +L    +
Sbjct: 24  AQALPSVKALSWVLLDASSGQILAELNKDQRLPPASLTKVMTAYMVFSEIREGRLSRMDR 83

Query: 104 IPVSKTAATQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
           + VS+ A  + P  S +YL+   + T E+ +  LI  SAND +    E +SGS+K F   
Sbjct: 84  VKVSEQAIIRRPEESSMYLRVGEFVTVEELLRGLIVASANDAALVLAEVVSGSQKAFTEQ 143

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           M+  A+K+GM  +++ N+SGL+ +   +TA+D  +L + + + FP+Y++Y S ++  +R+
Sbjct: 144 MNKTAQKLGMTQSLFANSSGLYTEKHYSTAKDLGLLAVRISQEFPEYFEYSSSKELTFRD 203

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD------PIVAVVMGMPTSQE 275
               N N LL     +DG+KTG+ + +G+ ++ S R            +AVV+G P++Q+
Sbjct: 204 FHKKNTNDLLFSKLPVDGMKTGHIKAAGWCVMVSARKNKRPDKKSERYIAVVLGAPSNQD 263

Query: 276 RDQKALELITSFLEKKTLKHQQ 297
           R      L+     + +   + 
Sbjct: 264 RFVAGRALLEFAFSQPSTFKES 285


>gi|89070235|ref|ZP_01157559.1| D-alanyl-D-alanine carboxypeptidase [Oceanicola granulosus
           HTCC2516]
 gi|89044155|gb|EAR50313.1| D-alanyl-D-alanine carboxypeptidase [Oceanicola granulosus
           HTCC2516]
          Length = 411

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 78/257 (30%), Positives = 135/257 (52%), Gaps = 6/257 (2%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
            A++       ++ V DV    +   K  DEP  PAS++K+MTLY+ FE ++S +L L+ 
Sbjct: 23  AAAQGFDTRANAAYVYDVTTETILLEKNADEPLPPASMSKLMTLYMAFEAIESGRLRLDE 82

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAI 160
           Q+PVS+ A +   S ++L      T E  +  +I  S ND S    E +S  G+E  FA 
Sbjct: 83  QLPVSEHAMSYGGSTMFLDTTDRPTVEDLLRGVIVLSGNDASAVLAEALSPDGTEAGFAR 142

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
           LM+ + ++IG+ N+ + N++G    +   + RD  ++   L ++FP  Y  F+ + F Y 
Sbjct: 143 LMTERGRQIGLTNSTFANSNGWPAPDHRMSVRDLGVVATRLIEDFPDLYPMFAEQTFEYD 202

Query: 221 NR---IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
            R    + N N LL      DG+KTG+T  +G+ +V S   +D  +V V+ G+ ++ ER 
Sbjct: 203 GRAPTNVRNRNPLLGLGIGADGLKTGHTEEAGYGLVGSAVQEDRRVVFVLAGLDSTAERA 262

Query: 278 QKALELITSFLEKKTLK 294
           +++  ++     +   K
Sbjct: 263 EESERVVNWAFRQYVEK 279


>gi|209518827|ref|ZP_03267640.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. H160]
 gi|209500712|gb|EEA00755.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. H160]
          Length = 273

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 122/242 (50%), Gaps = 10/242 (4%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-- 113
           +++D    Q+      D  R PASLTK+MT YI  + L+   +  + ++ V+     +  
Sbjct: 1   MLVDGESGQILLEHNADAKRQPASLTKLMTAYIALDALKHGSVRWDEKVAVNTADIGEVG 60

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
            + +++YL           +  LI  SAND +      + G+   F  LM++ A+K+GM 
Sbjct: 61  GDEARMYLVPGQQVPVRDLVQGLIAASANDAALVLARRVGGTPAGFEQLMNDIARKLGMA 120

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           +T +   SG+      +TARD + L + L K+FPQYY + S + F Y      N N LL 
Sbjct: 121 HTHFSTPSGITTPGNYSTARDLSTLAMRLTKDFPQYYTFSSEQHFVYGKFEKRNKNWLLG 180

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKD------DPIVAVVMGMPTSQERDQKALELITS 286
           K  ++DG+KTG+T+ +G+ IV + + K         + AV++G PT+ +R   A  L+  
Sbjct: 181 KDPSVDGMKTGHTQAAGYCIVATAKRKQTAPPMMRRVFAVILGAPTANDRITGAGSLLNY 240

Query: 287 FL 288
             
Sbjct: 241 AF 242


>gi|319638282|ref|ZP_07993045.1| D-alanyl-D-alanine carboxypeptidase DacC [Neisseria mucosa C102]
 gi|317400555|gb|EFV81213.1| D-alanyl-D-alanine carboxypeptidase DacC [Neisseria mucosa C102]
          Length = 405

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 78/257 (30%), Positives = 135/257 (52%), Gaps = 5/257 (1%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
           L  SI   +   E+ A    + IV D++  Q       D P  PA+LT+MMT Y+ F+ L
Sbjct: 40  LLHSINSPTTPPEIAA---TAYIVTDLHSKQTLASNNADAPIEPAALTQMMTAYLAFKAL 96

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS- 152
           ++  L     + VS  A     S+++L  K   +    I     +SAND +    E I  
Sbjct: 97  ENGTLEAGQMLTVSNAAWKVEGSRMFLDPKVPVSVSSLIKGTTIQSANDAAITLAEAIGN 156

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           GS  +F   M+ +AK++GM++T + N +G+     ++T  D AIL   L  ++P+YY  F
Sbjct: 157 GSIDEFVKQMNEEAKRLGMKHTHFNNPTGISSNGHVSTVGDLAILAAALINDYPKYYPLF 216

Query: 213 SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           + + F+Y N    N N LL +  +IDG+KTGY+  +G+++  S +  +  IV+++ G  +
Sbjct: 217 ANKSFKYNNIEQPNRNLLLYRDSSIDGLKTGYSEGAGYHLAASSKRNNRRIVSILAGAES 276

Query: 273 SQERDQKALELITSFLE 289
           ++ R  ++ +L+   L+
Sbjct: 277 TEARASESSKLLNWSLQ 293


>gi|291613195|ref|YP_003523352.1| beta-lactamase [Sideroxydans lithotrophicus ES-1]
 gi|291583307|gb|ADE10965.1| Beta-lactamase [Sideroxydans lithotrophicus ES-1]
          Length = 419

 Score =  255 bits (652), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 78/321 (24%), Positives = 150/321 (46%), Gaps = 13/321 (4%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMA--------SELHAKPKYSSIVIDVNKNQMTGFK 70
           Y      R   +   ++FL  ++ ++A        S        S  + D    Q    +
Sbjct: 30  YNPPIAIRPDSMKRALIFLFALLPTLAFSQEQEQSSSPPILAANSYALYDYTSGQFLVEQ 89

Query: 71  QDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFT 127
                  PA LTK+MT Y++F  ++  KL L  ++  S  A     +  ++YL      +
Sbjct: 90  NANAHIPPAQLTKLMTAYVVFSAIKQGKLSLTRKLLPSAYATRMQNDEPRMYLTAGKEVS 149

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
            E+ +  LI +SAND +    E ++  E   A  M+N+A+++G+++T + NA+G  D   
Sbjct: 150 VEELLRGLIVQSANDAARVLAETLANHEMALADAMNNEAQQLGLKDTHFVNATGTPDAQH 209

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRN 247
            ++A D A++   L ++FP+YY  +S R+++Y      N N+LL     +DG+ TG   +
Sbjct: 210 YSSAHDLALIAAALVRDFPEYYHIYSQREYQYNGINQFNRNRLLWMDPFVDGLATGNNES 269

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSST 307
             F +V S +  +  +++VV+G  T + R  ++  L+    +    +  + + KD L S+
Sbjct: 270 EEFYMVASAKRDERRLISVVIGTATEKLRSSESQRLLNYGFQD--FEAIRLYAKDQLVSS 327

Query: 308 SLKKSLMIKKLKRTYSQFKKI 328
                   K+++  +   + I
Sbjct: 328 KYVWKGTAKEVEIGFRADRYI 348


>gi|126736702|ref|ZP_01752441.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. CCS2]
 gi|126713817|gb|EBA10689.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. CCS2]
          Length = 382

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 73/261 (27%), Positives = 131/261 (50%), Gaps = 6/261 (2%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
             S+      +        ++ + D     +   K  D P  PAS++K+MT+Y+ FE + 
Sbjct: 1   MASLAFAPGWAAAFETNATAAYIYDQTTGTVLLSKNADTPLPPASMSKLMTIYMAFEAVA 60

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-- 152
             +L +N ++ VS  AA+   S ++L      + E  +  +I  S ND S    E +S  
Sbjct: 61  DGRLDINEELAVSSHAASFGGSSMFLDTTDRVSVEDLLRGVIVVSGNDASVVLAEALSPD 120

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           G+E  FA +M+++A+++GM N+ + N+SG        +  D  IL   L  +FP +Y  F
Sbjct: 121 GTESGFARMMTDRARQMGMMNSTFVNSSGWPAAGHRMSMEDLGILANRLITDFPTFYPLF 180

Query: 213 SIRKFRYRNRII---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           +  +F +  R+     N N +L+     DG+KTG+T  +GF +V S +  D  I+ V+ G
Sbjct: 181 AETEFPFDGRVPSNSRNRNPVLSMGIGADGLKTGHTEEAGFGLVGSAKQDDRRIIFVITG 240

Query: 270 MPTSQERDQKALELITSFLEK 290
           + + QER +++ ++I     +
Sbjct: 241 LDSRQERSEESAKIINWAFRQ 261


>gi|323701270|ref|ZP_08112945.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533872|gb|EGB23736.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 414

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 133/293 (45%), Gaps = 23/293 (7%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPAS 79
           I + + I  +  I++L +  I  A +        ++++ID    Q+   K +  R YPAS
Sbjct: 2   IVVAKKILSVIVIVWLCLGSIPYAWAGAPEISGEAAVLIDAGTGQVLYGKDEHKRMYPAS 61

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
            TK +T  +  E+ +     L   + +   A     + + L E      +  + AL+  S
Sbjct: 62  TTKTLTALVALEHAK-----LTDLVTIGPNALQAGGTSIGLTEGEKIPLKDLLYALMLNS 116

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AND   A  E ISGS +KFA L + +AKKIG ++T + N  G+ DKN  +TA D A++  
Sbjct: 117 ANDAGVAIAEHISGSVEKFAALSNQEAKKIGAKDTHFTNPHGMPDKNHYSTAYDLALIAR 176

Query: 200 LLRKNFPQYYKYFSIRKFRYR------NRIITNHNKLLNK----MHNIDGIKTGYTRNSG 249
              +N  ++ +  S   ++         + + NHNKLL           G+KTGYT  +G
Sbjct: 177 QAMQN-QEFRRIVSTVHYQVSRADPNAQKYLFNHNKLLWSKIYGYQGTTGVKTGYTVEAG 235

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL----EKKTLKHQQT 298
             ++ S +     ++AVV+    S      A +L+         ++ +K  Q 
Sbjct: 236 QCVIASAQRDGRELIAVVLHSDGSNI-WSDATKLLDYGFTNFHSRQVVKGGQV 287


>gi|284800030|ref|ZP_05985503.2| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria subflava
           NJ9703]
 gi|284796183|gb|EFC51530.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria subflava
           NJ9703]
          Length = 405

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 78/257 (30%), Positives = 136/257 (52%), Gaps = 5/257 (1%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
           L  SI   +   E+ A    + IV D++  Q       D P  PA+LT+MMT Y+ F+ L
Sbjct: 40  LLHSINSPTTPPEIAA---TAYIVTDLHSKQTLASNNADAPIEPAALTQMMTAYLAFKAL 96

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS- 152
           ++  L  +  + VS  A     S+++L  K   +    I     +SAND +    E I  
Sbjct: 97  ENGTLEASQMLTVSNAAWKVEGSRMFLDPKVPVSVSSLIKGTTIQSANDAAITLAEAIGN 156

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           GS  +F   M+ +AK++GM++T + N +G+     ++T  D AIL   L  ++P+YY  F
Sbjct: 157 GSIDEFVKQMNEEAKRLGMKHTHFNNPTGISSNGHVSTVGDLAILAAALINDYPKYYPLF 216

Query: 213 SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           + + F+Y N    N N LL +  +IDG+KTGY+  +G+++  S +  +  IV+++ G  +
Sbjct: 217 ANKSFKYNNIEQPNRNLLLYRDSSIDGLKTGYSEGAGYHLAASSKRNNRRIVSILAGAES 276

Query: 273 SQERDQKALELITSFLE 289
           ++ R  ++ +L+   L+
Sbjct: 277 TEARASESSKLLNWSLQ 293


>gi|310639559|ref|YP_003944317.1| d-ala-d-ala carboxypeptidase [Paenibacillus polymyxa SC2]
 gi|309244509|gb|ADO54076.1| D-ala-D-ala carboxypeptidase [Paenibacillus polymyxa SC2]
          Length = 462

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/268 (28%), Positives = 138/268 (51%), Gaps = 27/268 (10%)

Query: 55  SSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+I+ +  Q+      DEP  PAS+TKMMT YI+ E ++  KL    ++ V++ A+  
Sbjct: 72  SAILIEPSTGQVLLSMNPDEPLPPASMTKMMTEYIVAEQVKQGKLKWTDKVTVNENASKS 131

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L +    T E+  +A+   SAND + A  E +SG+E+ F  LM+  A+++GM+N
Sbjct: 132 IGSRIFLAQGDQHTVEELYIAMAVGSANDATVALAERVSGTEQDFVKLMNETAQRMGMKN 191

Query: 174 TIYKNASGLH------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           T + N++GL             D+  + TARD A L   + K+ P Y ++ +I+ +++R 
Sbjct: 192 TYFINSTGLDRKDMPTGFQPDTDRETVMTARDAATLAGYIIKDHPDYTRFTTIQSYKFRP 251

Query: 222 R---IITNHNKLLN-----------KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
                I N+N +L                +DG+KTG+T N+G     +       +++VV
Sbjct: 252 TDKAPIINYNWMLEANKNITNFRKFAYPGLDGMKTGHTANAGNCFTGTAERNGMRLISVV 311

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKH 295
           MG  +   R  +  +++    +   +K 
Sbjct: 312 MGADSDAHRFTETAKVLNYGFDNFEVKQ 339


>gi|260575562|ref|ZP_05843560.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sp. SW2]
 gi|259022205|gb|EEW25503.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sp. SW2]
          Length = 385

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 80/273 (29%), Positives = 138/273 (50%), Gaps = 8/273 (2%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLY 87
            L   +LFL+++    A     +   +  V D+  + +   K  D    PAS++K+MT+ 
Sbjct: 1   MLHRLMLFLALLTALPAQAFDTQASNAW-VYDLTTHTVLMDKNADVAVPPASMSKLMTIN 59

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           ++FE L+  ++ ++T   VS  A        S ++L+E    T EQ I  +I  S ND  
Sbjct: 60  MLFEALRDGRVAMDTTFAVSTRAKGMTALGGSTMFLQETDRPTVEQLIHGMIINSGNDAC 119

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
               E ++GSE+ FA  MS +A+ +GM N+ + NASG+ D +   +  D  +L   L + 
Sbjct: 120 VVVAEGLAGSEEAFAEQMSQRAQALGMTNSHFANASGMPDPSHRMSMHDLGLLATRLIEE 179

Query: 205 FPQYYKYFSIRKFRYRNRIIT---NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           FP+YY  F+  ++ Y +R +    N N LL      DG+KTG+T  +G+ +V S    + 
Sbjct: 180 FPEYYPVFAETEYNYADRAVENRFNRNPLLKLNIGADGLKTGHTTEAGYGLVGSAVQGNR 239

Query: 262 PIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
            IV  + G+P+   R +++  ++     +  LK
Sbjct: 240 RIVFAITGLPSETARAEESERIVNWAFRQFALK 272


>gi|213162143|ref|ZP_03347853.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
          Length = 247

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 121/239 (50%), Gaps = 11/239 (4%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLT 81
           R++     +LFL    +    +  A P     + I++D    ++      DE   PASLT
Sbjct: 9   RSLAAGSVLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLT 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILAL 135
           K+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +       +
Sbjct: 69  KIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGI 128

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I +S ND   A  ++++GS++ F  LM+  AK++G+ NT ++   GL    Q +TARD A
Sbjct: 129 IIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMA 188

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIV 253
           +LG  L  + P  Y     ++F + N    N N+LL   + ++DG+KTG T  +G+N+V
Sbjct: 189 LLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLV 247


>gi|300023249|ref|YP_003755860.1| serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525070|gb|ADJ23539.1| Serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 397

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/283 (26%), Positives = 139/283 (49%), Gaps = 15/283 (5%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYS---------SIVIDVNKNQMTGF-KQ 71
           + IQ   +++   L    ++ ++  E +               +I+ID            
Sbjct: 1   MLIQACARVLVSALIAISVLTAVGPEANPALAAEAAFTSKAPRAILIDAATGATLFQQHA 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYF 126
           DEP  PAS++K+MTL ++F  ++  ++    +  +S  A          S + +   T  
Sbjct: 61  DEPAPPASMSKLMTLAVLFRAMKEGRIQKTDEFTMSVNAWRNGGAPSGTSAMMVPVNTKV 120

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           T ++ I  ++ +S ND +    E ++GS   FA +M+++AK+IG+  + + NASGL D  
Sbjct: 121 TVDELIQGIVIQSGNDAAMCVAEGMAGSIPAFARMMNDEAKRIGLTKSTFTNASGLPDPQ 180

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           Q+ +ARD A+L   +   +P YY  F+ ++F YR     N N LL +    DG+KTG+T 
Sbjct: 181 QVMSARDLAVLARYIIDEYPDYYPVFAQKEFLYRKHRFINRNPLLFQNIGADGLKTGHTA 240

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
            +GF +V S       ++ VV G+  + +R ++A++L+     
Sbjct: 241 AAGFGLVGSAVQDGKRLIVVVSGLEKADQRKEEAVKLLNWGFN 283


>gi|229184724|ref|ZP_04311923.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BGSC 6E1]
 gi|228598738|gb|EEK56359.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BGSC 6E1]
          Length = 429

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/351 (23%), Positives = 159/351 (45%), Gaps = 36/351 (10%)

Query: 14  FLTYPYGSIYIQRNIQLMGKI-LFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMT 67
                   ++ +R I ++  + LF SI +IS ++             S+++++ N  ++ 
Sbjct: 1   MEVTEVKGMFCKRFIAIITVLTLFCSITVISGSASAETVSAIEVEAGSAVLVEANSGKIL 60

Query: 68  GFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKE 122
             K  DE    AS+TKMM+ Y++ E +++ KL  N ++ +S+ A      ++ S + L+ 
Sbjct: 61  YEKNADELLAIASMTKMMSEYLVHEAVENGKLKWNQKVKISEYAYKISQDRSLSNVPLEN 120

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
              +T ++   A++  SAN  + A  E I+G E  F  +M++K+K+ GM+N  + N++GL
Sbjct: 121 GGSYTVKELYEAMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGL 180

Query: 183 --------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NRI 223
                          D+    +ARD AIL   L ++FP+      I K  ++        
Sbjct: 181 TNHDLKGHHPEGTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQQGGKYPID 240

Query: 224 ITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           +TN N +L     +   +DG+KTG T  +G     +       +++VV+   +   R  +
Sbjct: 241 MTNFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTAERNGMRLISVVIKANSHAARFDE 300

Query: 280 ALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
             +L          + ++ + KD++ +      +   K K    Q K+  +
Sbjct: 301 TKKLYDYGFAN--FEVRKVNEKDSVVNGHETVRIANAKDKDVVVQTKQAVS 349


>gi|332798926|ref|YP_004460425.1| Serine-type D-Ala-D-Ala carboxypeptidase [Tepidanaerobacter sp.
           Re1]
 gi|332696661|gb|AEE91118.1| Serine-type D-Ala-D-Ala carboxypeptidase [Tepidanaerobacter sp.
           Re1]
          Length = 415

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/275 (26%), Positives = 125/275 (45%), Gaps = 21/275 (7%)

Query: 31  MGKILFLSIIMISM-----ASELHAKPKYSS---IVIDVNKNQMTGFKQD-EPRYPASLT 81
           +  +LFL   +I +     A +  + P  S    I+ID +  ++   K       PAS T
Sbjct: 11  IAVVLFLFSFLIPISFANGAEQTESLPSISGETGILIDASTGKVLYEKNAYTRMEPASTT 70

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E     K +L+  +   K     + +++YL+E    T EQ +  ++  S N
Sbjct: 71  KIMTAILALE-----KGNLSDVVTTGKQPTLADGTRIYLEEGEQLTLEQMLYGMMLNSGN 125

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D + A  E I GS + F  +M+ KA++IG ++T + N +GL  K  +TTA D A++    
Sbjct: 126 DAAIAIAEHIGGSVEAFVEMMNEKAREIGAKDTTFVNPNGLPAKGHLTTAYDLALISRYA 185

Query: 202 RKNFPQYYKYFSIRKFRYR------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
             N P++ K  S +           +R + N NKLL      DG+KTGYT  +G  +V S
Sbjct: 186 LLNLPEFRKIVSTKNAEIPWQAQDSDRQLINLNKLLWNYEGADGVKTGYTSTAGSTLVAS 245

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                  +++V++           +  L+      
Sbjct: 246 ATRNGWQLISVILKSDAINV-WHDSAALLDYGFTN 279


>gi|163746820|ref|ZP_02154177.1| D-alanyl-D-alanine carboxypeptidase [Oceanibulbus indolifex HEL-45]
 gi|161379934|gb|EDQ04346.1| D-alanyl-D-alanine carboxypeptidase [Oceanibulbus indolifex HEL-45]
          Length = 396

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/275 (28%), Positives = 140/275 (50%), Gaps = 12/275 (4%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           I+L      +++++    +        ++ V+D     +   K  DEP  PAS++K+MTL
Sbjct: 2   IRLFAA--AVALVLTLQPAAAFDTRATAAYVLDQTTGTVLLAKNADEPLPPASMSKLMTL 59

Query: 87  YIIFEYLQSKK----LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           Y+ FE ++  K    L L  ++PVS+ A +   S ++L      + E  I  +I  S ND
Sbjct: 60  YMAFEAVERGKQNGGLDLVEELPVSEHAMSYGGSTMFLDTTDRVSVEDLIRGVIVLSGND 119

Query: 143 VSTAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
            S    E +S  G+E  FA LM+ +A+++GM N+ + N++G      + + RD  +L   
Sbjct: 120 ASAVIAEALSPDGTEYGFARLMTQRAQQMGMTNSTFANSNGWPQAGHLMSVRDLGLLANR 179

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITN---HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
           +  ++PQ+Y  F+ R+F +  R   N    N LL      DG+KTG+T  +G+ +V S +
Sbjct: 180 IISDYPQFYPLFAEREFAFDGRAPQNKLNRNPLLGLGIGADGLKTGHTNEAGYGLVGSAK 239

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
             D  ++ V+ G+ ++  R Q+A  ++     + T
Sbjct: 240 QGDRRVIFVLSGLDSAAARAQEAESVVNWAFRQFT 274


>gi|158423796|ref|YP_001525088.1| D-alanyl-D-alanine carboxypeptidase [Azorhizobium caulinodans ORS
           571]
 gi|158330685|dbj|BAF88170.1| D-alanyl-D-alanine carboxypeptidase [Azorhizobium caulinodans ORS
           571]
          Length = 426

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/266 (25%), Positives = 130/266 (48%), Gaps = 6/266 (2%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLY 87
            L+  +  L  +  + A          + ++D     +   K  + R  P  + K+MT  
Sbjct: 36  ALLTVVAALLPLQAARAQTAFQTAVPEATLVDFASGTILFEKNAQGRVAPGGIVKIMTAA 95

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRSAND 142
           +IF+ +++ K+ L+T   VS+ A  +       + +++  K+       +   +  S ND
Sbjct: 96  VIFDQIRAGKITLDTPFYVSENAWRRGGGPSGGAAMFVPVKSQVRVGDLLQGALVVSGND 155

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E +SG+E +FA  M+ KA ++GM  + ++NA+G  D +Q T ARD A+L   + 
Sbjct: 156 AAIALAEGLSGTESEFAQRMNAKAAELGMSGSQFRNATGFADPDQFTNARDMAVLARSII 215

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           +N P+ YK F++    +      N N LLN     DG+   + +++G+++V S    +  
Sbjct: 216 RNDPELYKIFAVPDIEWSKIKQRNRNTLLNAGIGADGLHMSWVKDAGYHLVGSAVQGNQR 275

Query: 263 IVAVVMGMPTSQERDQKALELITSFL 288
           ++ VVMG  T +ER ++A  L+    
Sbjct: 276 LIVVVMGAKTEKERLEEARRLLEWGF 301


>gi|220904314|ref|YP_002479626.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868613|gb|ACL48948.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 258

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/238 (31%), Positives = 128/238 (53%), Gaps = 1/238 (0%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  S+I+I+++  ++   K  D    PASLTK+MT+Y+  + +++ K+    +I ++   
Sbjct: 2   PVRSAILINMDTGKILYAKNADMAIPPASLTKVMTMYLAMDQIRAGKIKPGEKIRITPQV 61

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A    S ++L+        Q +  +   S ND +TA    + G++++F   M+ KAK +G
Sbjct: 62  AAVGGSSMHLRAGERVALSQLLTGMAVVSGNDAATAVARRVGGNDRQFVRAMNQKAKALG 121

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M  T +KN +GL    Q TTARD A +     ++ P   +Y S++   YR+R   N N L
Sbjct: 122 MNRTTFKNPTGLPAAGQKTTARDMARMTRAYLRSHPSALRYHSVQLLTYRDRKTRNTNGL 181

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           L  +  ++G+KTG+T  SG+N++ + +     ++AVVMG  +   RD  A  LI +  
Sbjct: 182 LGTVAGVNGLKTGWTVASGYNLIVTGQRGKTRMLAVVMGGTSRVGRDNAARRLIEAGF 239


>gi|241758793|ref|ZP_04756906.1| D-alanyl-D-alanine carboxypeptidase DacC [Neisseria flavescens
           SK114]
 gi|241321001|gb|EER57214.1| D-alanyl-D-alanine carboxypeptidase DacC [Neisseria flavescens
           SK114]
          Length = 405

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/257 (29%), Positives = 135/257 (52%), Gaps = 5/257 (1%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
           L  SI   +   E+ A    + IV D++  Q       D P  PA+LT+MMT Y+ F+ L
Sbjct: 40  LLHSINSPTTPPEIAA---TAYIVTDLHSKQTLASNNADTPIEPAALTQMMTAYLAFKAL 96

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS- 152
           ++  L     + VS  A     S+++L  K   +    I     +SAND +    E +  
Sbjct: 97  ENGTLEAGQMLTVSNAAWKVEGSRMFLDPKVPVSVSSLIKGTTIQSANDAAITLAEALGN 156

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           GS  +F   M+ +AK++GM++T + N +G+     ++T  D AIL   L  ++P+YY  F
Sbjct: 157 GSIDEFVKQMNEEAKRLGMKHTHFNNPTGISSNGHVSTVGDLAILAAALINDYPKYYPLF 216

Query: 213 SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           + + F+Y N    N N LL +  +IDG+KTGY+  +G+++  S +  +  IV+++ G  +
Sbjct: 217 ANKSFKYNNIEQPNRNLLLYRDSSIDGLKTGYSEGAGYHLAASSKRNNRRIVSILAGAES 276

Query: 273 SQERDQKALELITSFLE 289
           ++ R  ++ +L+   L+
Sbjct: 277 TEARASESSKLLNWSLQ 293


>gi|225076059|ref|ZP_03719258.1| hypothetical protein NEIFLAOT_01091 [Neisseria flavescens
           NRL30031/H210]
 gi|224952619|gb|EEG33828.1| hypothetical protein NEIFLAOT_01091 [Neisseria flavescens
           NRL30031/H210]
          Length = 405

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/257 (29%), Positives = 135/257 (52%), Gaps = 5/257 (1%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
           L  SI   +   E+ A    + IV D++  Q       D P  PA+LT+MMT Y+ F+ L
Sbjct: 40  LLRSINSPTTPPEIAA---TAYIVTDLHSKQTLASNNADTPIEPAALTQMMTAYLAFKAL 96

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS- 152
           ++  L  +  + VS        S+++L  K   +    I     +SAND +    E +  
Sbjct: 97  ENGTLQADQMLTVSNVGWKVEGSRMFLNPKVPVSVSSLIKGTTIQSANDAAITLAEALGN 156

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           GS  +F   M+ +AK++GM++T + N +G+     ++T  D AIL   L  ++P+YY  F
Sbjct: 157 GSVDEFVKQMNEEAKRLGMKHTHFNNPTGISSNGHVSTVGDLAILAAALINDYPKYYPLF 216

Query: 213 SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           + + F+Y N    N N LL +  +IDG+KTGY+  +G+++  S +  +  IV+++ G  +
Sbjct: 217 ANKSFKYNNIEQPNRNLLLYRDSSIDGLKTGYSEGAGYHLAASSKRNNRRIVSILAGAES 276

Query: 273 SQERDQKALELITSFLE 289
           ++ R  ++ +L+   L+
Sbjct: 277 TEARASESSKLLNWSLQ 293


>gi|126739769|ref|ZP_01755460.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. SK209-2-6]
 gi|126719001|gb|EBA15712.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. SK209-2-6]
          Length = 388

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/278 (28%), Positives = 136/278 (48%), Gaps = 9/278 (3%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
            +      S+ + ++          ++ VID   + +   K  D+P  PAS++K+MTLYI
Sbjct: 5   FVTSAFVASLGLSALPLAAFETGARAAYVIDQGTDTVLLSKNADQPLPPASMSKLMTLYI 64

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            FE LQ  +L L+ ++PVS  A +   S ++L        E  +  +I  S ND      
Sbjct: 65  AFEALQDGRLTLSEKLPVSAHAMSYGGSTMFLDTTDRVGVEDLLRGIIVLSGNDACAVIA 124

Query: 149 EFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
           E +S  G+E  FA  M+ +A+++GM N  + N++G        + RD  IL   L ++FP
Sbjct: 125 EALSPDGTEAGFARYMTRRAQELGMVNATFANSNGWPAAGHRMSMRDLGILAERLIEDFP 184

Query: 207 QYYKYFSIRKFRYRNR---IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           QYY  FS ++F +  R      N N LL      DG+KTG+T  +G+ +V S    +  +
Sbjct: 185 QYYPLFSEKEFAFDGRAPSNTRNRNPLLGLGIGADGLKTGHTSEAGYGLVGSAVQGERRV 244

Query: 264 VAVVMGMPTSQERDQKALELITSFLE---KKTLKHQQT 298
           + V+ G+ +++ R ++A  ++        KKT+     
Sbjct: 245 IFVITGLNSAKARAEEAEAVVNWSFRQFAKKTIAKAGI 282


>gi|254707442|ref|ZP_05169270.1| D-alanyl-D-alanine carboxypeptidase [Brucella pinnipedialis
           M163/99/10]
 gi|261314930|ref|ZP_05954127.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M163/99/10]
 gi|261303956|gb|EEY07453.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M163/99/10]
          Length = 295

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 90/265 (33%), Positives = 147/265 (55%), Gaps = 9/265 (3%)

Query: 33  KILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYII 89
           +I F ++    +A S   A P   SI +DV   ++   +QD  +  YPASLTKMMT Y+ 
Sbjct: 7   RIWFAAVAFSGIALSGAAANP---SIAVDVATGKV-YEQQDAFQRWYPASLTKMMTAYVT 62

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           F  LQS ++ L + + ++  A+ + PSK+  K  +  T +  +  ++ +SANDVS A  E
Sbjct: 63  FRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVAE 122

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            + G+E  F   M+ +A+++GM  + + N +GLHD N  TTARD A+L + LR+ FPQY 
Sbjct: 123 AVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRREFPQYA 182

Query: 210 KYFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            YF+          ++  N+N LL +    DG+KTG+   SGFN+  S       ++A+V
Sbjct: 183 HYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRTVLAIV 242

Query: 268 MGMPTSQERDQKALELITSFLEKKT 292
           +G    + R  +A +++T     ++
Sbjct: 243 LGADRQETRAIQAAQMMTDAFRARS 267


>gi|308066921|ref|YP_003868526.1| D-alanyl-D-alanine carboxypeptidase precursor [Paenibacillus
           polymyxa E681]
 gi|305856200|gb|ADM67988.1| D-alanyl-D-alanine carboxypeptidase precursor [Paenibacillus
           polymyxa E681]
          Length = 462

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/268 (28%), Positives = 137/268 (51%), Gaps = 27/268 (10%)

Query: 55  SSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I+I+ +  Q+      DEP  PAS+TKMMT YI+ E ++  KL    ++ V++ A+  
Sbjct: 72  SAILIEPSTGQVLLSMNPDEPLPPASMTKMMTEYIVAEQVKQGKLKWTDKVTVNENASKS 131

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L +    T E+  +A+   SAND + A  E +SG+E+ F  LM+  A+++GM+N
Sbjct: 132 IGSRIFLAQGDQHTVEELYIAMAVGSANDATVALAERVSGTEQDFVKLMNETAQRMGMKN 191

Query: 174 TIYKNASGLH------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           T + N++GL             D+  + TARD A L   + K+ P Y ++ +I+ +++R 
Sbjct: 192 TYFINSTGLDRSDMPKGFQPDTDRETVMTARDAATLASYIIKDHPDYTRFTTIQSYKFRP 251

Query: 222 R---IITNHNKLLN-----------KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
                + N N +L                +DG+KTG+T N+G     +       +++VV
Sbjct: 252 TDKAPLININWMLEANKNITNFRKFAYPGLDGMKTGHTANAGNCFTGTAERNGMRLISVV 311

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKH 295
           MG  +   R  +  +++    +   +K 
Sbjct: 312 MGADSDAHRFTETAKVLNYGFDNFEVKQ 339


>gi|159043475|ref|YP_001532269.1| serine-type D-Ala-D-Ala carboxypeptidase [Dinoroseobacter shibae
           DFL 12]
 gi|157911235|gb|ABV92668.1| serine-type D-Ala-D-Ala carboxypeptidase [Dinoroseobacter shibae
           DFL 12]
          Length = 393

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/253 (29%), Positives = 132/253 (52%), Gaps = 5/253 (1%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKK-LHL 100
             A         ++ V+DV    +   K  D P  PAS++K+MTLY++FE L+    + L
Sbjct: 19  PAAQAAFETRAEAAYVVDVTTGTVLLEKNADVPLPPASMSKLMTLYMLFEALEKNPAVTL 78

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
           +T   VS  A  +  S ++L E+   T E  I  +I +S ND +    E ++G+E+ F+ 
Sbjct: 79  DTTFRVSARAMAKGGSTMFLTERDRPTAEDLIKGIIVQSGNDATVVVAEGLAGTEEAFSR 138

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
           LM+ K   IG+  + + N+SG  D     + RD  IL   + +++P+YY YF++ ++ + 
Sbjct: 139 LMTEKGAAIGLTQSTFTNSSGWPDPQHRMSMRDLGILTQRIIEDYPEYYGYFAMSEWGFD 198

Query: 221 NRIIT---NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
            R      N N LL      DG+KTG+T+ +G+ +V S +     I+ V+ G+ T + R 
Sbjct: 199 GRAPQNRFNRNPLLKLDIGADGLKTGHTQEAGYGLVGSAQQGARRIIFVITGLETDRARA 258

Query: 278 QKALELITSFLEK 290
           +++  +++    +
Sbjct: 259 EESERIVSWAFRQ 271


>gi|225864479|ref|YP_002749857.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus 03BB102]
 gi|225790585|gb|ACO30802.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus 03BB102]
          Length = 424

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/346 (23%), Positives = 159/346 (45%), Gaps = 36/346 (10%)

Query: 19  YGSIYIQRNIQLMGKI-LFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ- 71
              ++ +R I ++  + LF SI +IS ++             S+++++ N  ++   K  
Sbjct: 1   MKGMFCKRFIAIITVLTLFCSITVISGSASAETVSAIEVEAGSAVLVEANSGKILYEKNA 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           DE    AS+TKMM+ Y++ E +++ KL  N ++ +S+ A      ++ S + L+    +T
Sbjct: 61  DELLAIASMTKMMSEYLVHEAVENGKLKWNQKVKISEYAYKISQDRSLSNVPLENGGSYT 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----- 182
            ++   A++  SAN  + A  E I+G E  F  +M++K+K+ GM+N  + N++GL     
Sbjct: 121 VKELYEAMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDL 180

Query: 183 ---------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NRIITNHN 228
                     D+    +ARD AIL   L ++FP+      I K  ++        +TN N
Sbjct: 181 KGHHPEGTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQQGGKYPIDMTNFN 240

Query: 229 KLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +L     +   +DG+KTG T  +G     +       +++VV+   +   R  +  +L 
Sbjct: 241 WMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTAERNGMRLISVVIKANSHAARFDETKKLY 300

Query: 285 TSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
                    + ++ + KD++ +      +   K K    Q K+  +
Sbjct: 301 DYGFAN--FEVRKVNEKDSVVNGHETVRIANAKDKDVVVQTKQAVS 344


>gi|295696423|ref|YP_003589661.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           tusciae DSM 2912]
 gi|295412025|gb|ADG06517.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           tusciae DSM 2912]
          Length = 366

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/276 (25%), Positives = 129/276 (46%), Gaps = 17/276 (6%)

Query: 24  IQRNIQLMGKILFLSI-IMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLT 81
           +      +  ILF  +    + + +L+      + V+DV   ++   K  D+    ASLT
Sbjct: 5   VLAGFVAVTMILFPGVGAAAANSPDLYGISAQGAAVVDVGSGRVLYEKNGDQMMPIASLT 64

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K++T ++  E  +     L+ ++ +S  AA +  S +YL+    +T    + A++ RS N
Sbjct: 65  KIVTGWLAVESGR-----LDERVTISANAARKEGSSVYLRAGETYTLRDLVYAMMLRSGN 119

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D +TA  E ++GSE +FA LM+ KA+++G+++  + N  GL       +A D A +    
Sbjct: 120 DAATAVAEHLAGSEARFAALMNAKAREMGLRHVHFANPHGLDAPGHGASAVDLARMTAKA 179

Query: 202 RKNFPQYYKYFSIRKFRYR------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
            +N P++      +  R        +R++ N NK+L +    DG+KTGYT+ +G  + +S
Sbjct: 180 LQN-PEFAAVVRTKYHRMPWPGEAWDRVMRNKNKMLWRYPGADGVKTGYTKRAGRCLASS 238

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
                  +V VV+  P           L     +  
Sbjct: 239 ATRDGHQVVVVVLKDPDD---WADTARLFDHVFQTY 271


>gi|260459469|ref|ZP_05807724.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium
           opportunistum WSM2075]
 gi|259035023|gb|EEW36279.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium
           opportunistum WSM2075]
          Length = 387

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 145/299 (48%), Gaps = 10/299 (3%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           ++L       + +ID +   +   K  D+P  PAS+ K+MT+ ++F  ++S +L L+   
Sbjct: 26  AQLFETKAAQAFMIDADTGTVLFSKDADKPIQPASMAKLMTMEVVFNAIKSGRLKLDDTF 85

Query: 105 PVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            VS+ A  +       S ++ K K+    E  I  +  ++AND      E ++GSE  FA
Sbjct: 86  VVSENAWRKGGAPSGTSTMFAKLKSSVRLEDLIQGVTVQAANDGCIVIAEGMAGSEDNFA 145

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             M+ +A++IG++ + + N++GL    Q T+ R+   L + L +N+P +Y+Y+S++ F +
Sbjct: 146 AQMTERARQIGLKTSTFVNSTGLPADGQQTSVRELTQLALHLWRNYPDFYRYYSLKDFTW 205

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
                 N N LL      DG+  G +  SGF IV S+ +    ++A + G+   +ER ++
Sbjct: 206 NKISQRNRNPLLAMDIGADGLAVGASEASGFGIVGSVSHNGTRVIAALSGLANDKERAEE 265

Query: 280 ALELITSF---LEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           A +L+       EK  +  +     +       K  + + K K   + F  I  +   T
Sbjct: 266 ARKLLDWGVRSFEKTEIFAKDEVVGEAQVFGGAKSGVTL-KAKGPIAIFLPITNRDKLT 323


>gi|167040728|ref|YP_001663713.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X514]
 gi|166854968|gb|ABY93377.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
           X514]
          Length = 421

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 77/322 (23%), Positives = 148/322 (45%), Gaps = 27/322 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQDEPR-YPAS 79
           +++ I  +  +  L + +  + + +   P+    +++++D    Q+   K    R YPAS
Sbjct: 1   MKKIIASLLTLFILVVQITPVYANVPPPPEIVGPTAVLMDFTTGQVLYDKNMHKRMYPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
            TK++T  I  E     K +LN  +  S      + + ++L      T EQ + A++ +S
Sbjct: 61  TTKILTAIIAIE-----KGNLNDIVTASNNVTKIDGNSIFLSPGEQLTLEQLLYAIMLQS 115

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AND + A  E I GS + FA +M+ KAK+IG  ++ + N +GL D N  +T  D A++  
Sbjct: 116 ANDAAIAIAEHIGGSVENFAKMMNEKAKEIGAYDSHFVNPNGLPDDNHYSTPYDMALIAR 175

Query: 200 LLRKNFPQYYKYFSIRKFRYRN-------RIITNHNKLLN----KMHNIDGIKTGYTRNS 248
              +N P++ K  +   ++          R +   N+L+     +    DG+KTG T  +
Sbjct: 176 YAMQN-PEFRKIVTTIHYQIPPTNKFDKVRDLWLSNRLIKPSSFRYEGADGVKTGDTVAA 234

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
           G  +  S       +++V+MG   +       ++L+    +  +L  ++T + + ++   
Sbjct: 235 GQVLAASATRDGRRLISVIMGDQGTNI-WTDTIKLLDYGFQNFSLV-KKTEKGETITYID 292

Query: 309 LKKS----LMIKKLKRTYSQFK 326
           L KS     +I K    Y   K
Sbjct: 293 LGKSHFKLPLIAKEDFYYEVPK 314


>gi|332716423|ref|YP_004443889.1| penicillin-binding protein [Agrobacterium sp. H13-3]
 gi|325063108|gb|ADY66798.1| penicillin-binding protein [Agrobacterium sp. H13-3]
          Length = 372

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 84/253 (33%), Positives = 139/253 (54%), Gaps = 1/253 (0%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQS 95
           ++I+   + +          +V+DV   ++   ++     YPASLTK+MT YI F  +++
Sbjct: 18  IAIMTAGLVAAAPVANANPKMVVDVKTGKVISHQEAFRKWYPASLTKLMTAYIAFSQMKA 77

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
            KL   T++ +SK AA Q  SK+Y K     T +  +  L+ +SAND++ A  E I G+ 
Sbjct: 78  GKLSPQTEVVMSKKAADQPASKMYFKPGQKLTMDSALKLLLIKSANDIAVAIAETIGGTS 137

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             F   M+ +A+++GM +T Y NA+GL  K Q TTARD A+L +++++ FP+Y  YFS+ 
Sbjct: 138 DNFVAQMNAQAQRLGMSSTRYINANGLPGKGQYTTARDLALLALIIKREFPEYAHYFSLE 197

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
                 +   N N L+ +    DG+KTG+   SGFN V+S       ++ VV+G  +   
Sbjct: 198 GVTTGKKDYANFNMLVGRFDGADGMKTGFICASGFNQVSSAVRNGRSVITVVLGADSLAG 257

Query: 276 RDQKALELITSFL 288
           R  ++ +L+   L
Sbjct: 258 RTDQSADLLQMGL 270


>gi|297170270|gb|ADI21307.1| D-alanyl-D-alanine carboxypeptidase [uncultured gamma
           proteobacterium HF0010_09F21]
          Length = 381

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/261 (27%), Positives = 129/261 (49%), Gaps = 10/261 (3%)

Query: 44  MASELHAKPKY---SSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
            +S +   P     S I+ +   + +     ++E    ASLTK+MT Y++ + ++   + 
Sbjct: 17  FSSPIPKPPDLGVGSYILYEPTTDTVIASFNENESVEVASLTKLMTSYVVADQIKQGYIS 76

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           +  +  +S  A     S+++++E T       +  ++  S ND S A  E I+GSE+ F 
Sbjct: 77  MEDEPTISVKAWQTPGSQMFIREGTKVKVSDLVKGMVIISGNDASVALAEHIAGSEENFV 136

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            LM   A  +G++N+ + N+SGL D N +++A D A L   + ++FP +Y+ +  ++F Y
Sbjct: 137 YLMDQYAVDLGLRNSDFNNSSGLPDPNNVSSALDLAKLTGAIIRDFPDHYQIYKEKEFSY 196

Query: 220 ---RNRI--ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                 +    N N+LL+     DG+KTGYTR +G  +V S    D  ++AVV+G    +
Sbjct: 197 SAPGEYVAPQPNRNRLLHLDDMFDGVKTGYTRAAGHCLVGSSTRDDMRLIAVVLGSGIDK 256

Query: 275 ERDQKALELITSFLEKKTLKH 295
            R      L+    +    + 
Sbjct: 257 -RFADVRALVGYGYQYFKTRE 276


>gi|229170684|ref|ZP_04298327.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH621]
 gi|228612787|gb|EEK69969.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH621]
          Length = 442

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 81/351 (23%), Positives = 157/351 (44%), Gaps = 36/351 (10%)

Query: 14  FLTYPYGSIYIQRNIQLMGKI-LFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMT 67
                   ++ +R I +   + LF S+++ S ++     P       S+I+++ N  ++ 
Sbjct: 1   MEVTEVKGMFYKRFIAIGTVLTLFCSMVVTSGSASAETVPALDVEAGSAILVEANSGKIL 60

Query: 68  GFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKE 122
             K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S+ A      ++ S + L+ 
Sbjct: 61  YQKNADELLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAYKISQDRSLSNVPLEN 120

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
              +T ++   A++  SAN  + A  E I+G E  F  +M++K+K+ GM+N  + N++GL
Sbjct: 121 GGSYTVKELYEAMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGL 180

Query: 183 --------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RI 223
                          D+    +ARD AIL   L ++FP+      I K  ++        
Sbjct: 181 TNHDLKGHHPEGTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQKGGKYPID 240

Query: 224 ITNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           +TN N +L     +   +DG+KTG T  +G     ++      +++VV+   +   R  +
Sbjct: 241 MTNFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKASSHTARFDE 300

Query: 280 ALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
             +L         +K  + + KD++        +   K K    Q K+  +
Sbjct: 301 TKKLYDYGFANFEVK--KVYEKDSVVKGHETVRVANAKDKDVVVQAKQAVS 349


>gi|71083689|ref|YP_266409.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter
           ubique HTCC1062]
 gi|71062802|gb|AAZ21805.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 383

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 79/255 (30%), Positives = 134/255 (52%), Gaps = 9/255 (3%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A+        ++I+ D    ++   K  +   YPAS+TK+MT  I F+ ++S  L L+ +
Sbjct: 19  ANAAFDVKARTAILQDYLSGEILFEKDADKSIYPASMTKIMTAIIAFDLIRSGDLSLDEK 78

Query: 104 IPVSKTAA---TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
             VS+ A    +   S +++      + E  +  +I  S ND   A  E I+G+E +FA+
Sbjct: 79  FLVSENAWRLSSAGYSSMFIMVGDEVSVENLLKGIIIASGNDACVALAEGIAGTEDEFAV 138

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
           +M+ KAK+IGM NT + N+SG++D   ++T RD  ++   L K FP+ YKYF+ ++F + 
Sbjct: 139 MMTAKAKEIGMNNTNFANSSGINDTENLSTVRDIMLMSNYLIKEFPEEYKYFAEKEFTWN 198

Query: 221 -----NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
                     N N LL K    DGIKTGY     +++ +S+      ++AV  G  T  +
Sbjct: 199 RTGGDPITQGNRNPLLYKSLGADGIKTGYLAVEKYSLASSVERNGRRLIAVGSGFNTKND 258

Query: 276 RDQKALELITSFLEK 290
           R +++ +L+T  L  
Sbjct: 259 RSRESAKLLTWGLTN 273


>gi|229133395|ref|ZP_04262223.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BDRD-ST196]
 gi|228650068|gb|EEL06075.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BDRD-ST196]
          Length = 442

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 82/351 (23%), Positives = 157/351 (44%), Gaps = 36/351 (10%)

Query: 14  FLTYPYGSIYIQRNIQLMGKI-LFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMT 67
                   ++ +R I +   + LF SI++ S ++     P       S+I+++ N  ++ 
Sbjct: 1   MEVTEVKGMFYKRFIAIGTVLTLFCSIVVTSGSASAETVPALDVEAGSAILVEANSGKIL 60

Query: 68  GFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKE 122
             K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S+ A      ++ S + L+ 
Sbjct: 61  YQKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAYKISQDRSLSNVPLEN 120

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
              +T ++   A++  SAN  + A  E I+G E  F  +M++K+K+ GM+N  + N++GL
Sbjct: 121 GGSYTVKELYEAMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGL 180

Query: 183 --------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RI 223
                          D+    +ARD AIL   L ++FP+      I K  ++        
Sbjct: 181 TNHDLKGHHPEGTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQKGGKYPID 240

Query: 224 ITNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           +TN N +L     +   +DG+KTG T  +G     ++      +++VV+   +   R  +
Sbjct: 241 MTNFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVEKNGMRLISVVIKANSHTARFDE 300

Query: 280 ALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
             +L         +K  + + KD++        +   K K    Q K+  +
Sbjct: 301 TKKLYDYGFANFEVK--KVYGKDSVVKGHETVRVANAKDKDIVVQTKQAVS 349


>gi|313901070|ref|ZP_07834558.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. HGF2]
 gi|312954028|gb|EFR35708.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. HGF2]
          Length = 395

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 83/326 (25%), Positives = 153/326 (46%), Gaps = 27/326 (8%)

Query: 29  QLMGKILFLSIIMISMASELHA-----------------KPKYSSIVIDVNKNQMTGFKQ 71
           +L+   L + + M  +  ++HA                     ++ +++    ++   K 
Sbjct: 3   KLIVLCLSICLCMGLLPQQIHAQDDKTKQEPAQNAQDLAPSAKAAYLVENTTGKVIYAKH 62

Query: 72  D-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
           + +  YPAS+TKMM L +IFE L  KK+  +  +  S+ AA+   S+++L+     +   
Sbjct: 63  ETDKLYPASMTKMMGLLLIFEALHDKKISWDESVSASEYAASMGGSQVFLEPGESMSVRD 122

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            + ++   SAND   A  E + GS   F  +M++KAK++ + N+ + NA+GLHD    T 
Sbjct: 123 MVKSICIASANDAMVAMAEKVGGSNDHFVAMMNDKAKELKLSNSHFMNATGLHDPEHYTC 182

Query: 191 ARDQAILGILLRKNFPQYYKYFS------IRKFRYRNRIITNHNKLLNKMHNIDGIKTGY 244
           A+D +I+   L     +     +      IR+   +   + N NKLL +   +DG+KTG+
Sbjct: 183 AKDMSIIARALIAEGGEELLRITSTYDAYIRENTDKKFWLVNTNKLLKQYEGVDGLKTGF 242

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT---LKHQQTHRK 301
           T  +   I  + + KD  +VAV MG P+S++R+ +  +++     +     L  + T  K
Sbjct: 243 TTEAMSCITVTAKKKDLRLVAVAMGEPSSKQRNAEIKQMLDYGFSQYAQGLLYPKGTKLK 302

Query: 302 DNLSSTSLKKSLMIKKLKRTYSQFKK 327
                     S+ +  LK     F+K
Sbjct: 303 TYTMENGKPSSVNLVTLKDLVYVFEK 328


>gi|295100396|emb|CBK97941.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
           L2-6]
          Length = 418

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/237 (32%), Positives = 123/237 (51%), Gaps = 3/237 (1%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++I+I+    ++   K  DE    AS+TK+MTL + FE +   +L + T +PVS+ A   
Sbjct: 70  AAILIEQGSGRVLYEKNADERVPIASITKVMTLLLAFEAVHDGRLTMETPVPVSEHAYHM 129

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+   +FT ++ I A+   SAND + A  E + GSE  F   M+ +A  +GM+ 
Sbjct: 130 GGSQIWLEPGEHFTLDEMIKAICVSSANDAAVAVAELVGGSEPAFVEQMNARAASLGMEQ 189

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIITNHNKLL 231
           T ++NA GL  +  ++TARD A +   +    P+   Y  I     R     + N NKLL
Sbjct: 190 TSFRNACGLDAEGHLSTARDVAAMSRTILNTCPEVLHYTGIWTDTLRGGATQLINTNKLL 249

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            +   I G+KTG T  +G  I  S       ++AV++G P+S +R   A  L+    
Sbjct: 250 RRYEGITGLKTGTTGGAGICISASATRNGLSLIAVILGAPSSADRFNAATTLLDYGF 306


>gi|319407837|emb|CBI81490.1| penicillin-binding protein [Bartonella sp. 1-1C]
          Length = 360

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 94/292 (32%), Positives = 151/292 (51%), Gaps = 11/292 (3%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL 93
           LF S I+  ++S   A P  S   +D    ++    Q  E  YPASLTK+M  YIIF  +
Sbjct: 8   LFFSFILSIISSLTLAHPFIS---VDTTTGRILKHNQAFERWYPASLTKLMMTYIIFRAM 64

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            + K+     I +SK AA         K  +  T +  +   + +S ND++ A  E ISG
Sbjct: 65  STGKISPYKHITISKNAAQAPAIHSGYKAGSVLTLDTALKITLVKSTNDLAIAISEAISG 124

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S++ F   M+ +A+++GM  T + N SGL + N  +TARD A+L + +R+ FPQY  YFS
Sbjct: 125 SQEAFVKQMNAEARRLGMFGTNFTNTSGLPNPNNYSTARDMALLAVQIRREFPQYTHYFS 184

Query: 214 IRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           I    + N  +I +N N L+ +   IDG+KTG+   SGFN+V S       I+ V++G  
Sbjct: 185 IPAIDFGNGKKIQSNLNNLIGRFDGIDGMKTGFICASGFNLVASATRNKRTIIVVILGSE 244

Query: 272 TSQERDQKALELITSFL-----EKKTLKHQQTHRKDNLSSTSLKKSLMIKKL 318
           +  +R++KA +L+ +        + TL   + +       T +K+ +   + 
Sbjct: 245 SINKREEKAAQLLDAGFLDKGSPQLTLATLEPYGTKISQITDMKQQICTPEA 296


>gi|315644241|ref|ZP_07897411.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           vortex V453]
 gi|315280616|gb|EFU43905.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           vortex V453]
          Length = 330

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 81/300 (27%), Positives = 144/300 (48%), Gaps = 28/300 (9%)

Query: 25  QRNIQLMGKILF---LSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYP 77
           +R + L+  +L    +  ++I        +PK  +   +++D+N  ++   +  D P  P
Sbjct: 3   KRWLWLVMVLLITVPIGAVVIGNIERAGFRPKVDARAVVLMDLNTGRILLSENGDIPLPP 62

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS++K+MT  +I + +++ K   + ++ +S TA+  +  K+ LK   + T  +   ++  
Sbjct: 63  ASMSKLMTELVILDDIKTGKKSWDDEVQISDTASGVSGIKIALKSGEFLTVRELFQSITV 122

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM-QNTIYKNASG-----------LHDK 185
            SAND + A  E  +GSE+ F   M+ KAK+IGM  +T + NASG             ++
Sbjct: 123 YSANDAAVALAEHFAGSEEAFVQKMNAKAKEIGMSSSTHFVNASGVESHTDNDQEWSSER 182

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFS--IRKFRYRNRIITNHNKLL------NKMHNI 237
             + TA D A L   L K+ P      S    K   RN  ++N N +L            
Sbjct: 183 ETVMTAEDTAKLAAHLIKSHPDILSTSSKTQTKISGRNLYLSNTNWMLPSLGGPYSYEGT 242

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQ 297
           DG+KTGYT N+G+    +   +   ++AVVMG  + + R ++  +L      K TL  ++
Sbjct: 243 DGLKTGYTVNAGYCFTGTAEKQGSRLIAVVMGTESKEARFEETRKLFDYGFAK-TLTWKE 301


>gi|295091220|emb|CBK77327.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cf.
           saccharolyticum K10]
          Length = 404

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/270 (27%), Positives = 132/270 (48%), Gaps = 15/270 (5%)

Query: 43  SMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           + AS     P+  +   I+++ +   +   K  DE R PAS+TK+MTL + F+ L+S K+
Sbjct: 35  APASAALEGPQIQAPCGILMEASTGTVLYEKNADEARNPASVTKIMTLLLTFDALKSGKI 94

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            L  ++  S  A +   S+++L+E    T E  I  ++  S ND S A  E+I+G E  F
Sbjct: 95  ALTDEVVTSAHAKSMGGSQVFLEEGEVQTVETLIKCIVIASGNDASVAMAEYIAGDEASF 154

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
             +M+ +AK +GM+   +++  GL D  +   +ARD A++   L   +P+ + Y +I   
Sbjct: 155 VQMMNERAKGLGMEQANFEDCCGLTDSASHAMSARDIALMTRELITKYPEIFNYSTIWME 214

Query: 218 RY--------RNRIITNHNKLLNKMHN--IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
                     +   ++N NKLL    N  + G+KTG T  + + +  + R     ++AV+
Sbjct: 215 NITHVTKQGTKEFGLSNTNKLLKMATNFEVTGLKTGSTSTAKYCLSATARKDGVELIAVI 274

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKHQQ 297
           +  P  + R   A+ L+        L   +
Sbjct: 275 LAAPDYKARFNDAVTLLNYGYANCRLYTDE 304


>gi|91763271|ref|ZP_01265235.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91717684|gb|EAS84335.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 393

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 79/255 (30%), Positives = 134/255 (52%), Gaps = 9/255 (3%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A+        ++I+ D    ++   K  +   YPAS+TK+MT  I F+ ++S  L L+ +
Sbjct: 29  ANAAFDVKARTAILQDYLSGEILFEKDADKSIYPASMTKIMTAIIAFDLIRSGDLSLDEK 88

Query: 104 IPVSKTAA---TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
             VS+ A    +   S +++      + E  +  +I  S ND   A  E I+G+E +FA+
Sbjct: 89  FLVSENAWRLSSAGYSSMFIMVGDEVSVENLLKGIIIASGNDACVALAEGIAGTEDEFAV 148

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
           +M+ KAK+IGM NT + N+SG++D   ++T RD  ++   L K FP+ YKYF+ ++F + 
Sbjct: 149 MMTAKAKEIGMNNTNFANSSGINDTENLSTVRDIMLMSNYLIKEFPEEYKYFAEKEFTWN 208

Query: 221 -----NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
                     N N LL K    DGIKTGY     +++ +S+      ++AV  G  T  +
Sbjct: 209 RTGGDPITQGNRNPLLYKSLGADGIKTGYLAVEKYSLASSVERNGRRLIAVGSGFNTKND 268

Query: 276 RDQKALELITSFLEK 290
           R +++ +L+T  L  
Sbjct: 269 RSRESAKLLTWGLTN 283


>gi|295116100|emb|CBL36947.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
           SM4/1]
          Length = 404

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 74/272 (27%), Positives = 133/272 (48%), Gaps = 15/272 (5%)

Query: 41  MISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSK 96
           + + AS     P+  +   I+++ +   +   K  DE R PAS+TK+MTL + F+ L+S 
Sbjct: 33  VSAPASAALEGPQIQAPCGILMEASTGTVLYEKNADEARNPASVTKIMTLLLTFDALKSG 92

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           K+ L  ++  S  A +   S+++L+E    T E  I  ++  S ND S A  E+I+G E 
Sbjct: 93  KIALTDEVVTSAHAKSMGGSQVFLEEGEVQTVETLIKCIVIASGNDASVAMAEYIAGDEA 152

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIR 215
            F  +M+ +AK +GM+   +++  GL D  +   +ARD A++   L   +P+ + Y +I 
Sbjct: 153 SFVQMMNERAKGLGMEQANFEDCCGLTDSASHAMSARDIALMTRELITKYPEIFNYSTIW 212

Query: 216 KFRY--------RNRIITNHNKLLNKMHN--IDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
                       +   ++N NKLL    N  + G+KTG T  + + +  + R     ++A
Sbjct: 213 MENITHVTKQGTKKFGLSNTNKLLKMATNFEVTGLKTGSTSTAKYCLSATARKDGVELIA 272

Query: 266 VVMGMPTSQERDQKALELITSFLEKKTLKHQQ 297
           V++  P  + R   A+ L+        L   +
Sbjct: 273 VILAAPDYKARFNDAVTLLNYGYANCRLYTDE 304


>gi|283795540|ref|ZP_06344693.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
 gi|291077207|gb|EFE14571.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
          Length = 404

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 74/272 (27%), Positives = 133/272 (48%), Gaps = 15/272 (5%)

Query: 41  MISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSK 96
           + + AS     P+  +   I+++ +   +   K  DE R PAS+TK+MTL + F+ L+S 
Sbjct: 33  VSAPASAALEGPQIQAPCGILMEASTGTVLYEKNADEARNPASVTKIMTLLLTFDALKSG 92

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           K+ L  ++  S  A +   S+++L+E    T E  I  ++  S ND S A  E+I+G E 
Sbjct: 93  KIALTDEVVTSAHAKSMGGSQVFLEEGEVQTVETLIKCIVIASGNDASVAMAEYIAGDEA 152

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIR 215
            F  +M+ +AK +GM+   +++  GL D  +   +ARD A++   L   +P+ + Y +I 
Sbjct: 153 SFVQMMNERAKGLGMEQANFEDCCGLTDSASHAMSARDIALMTRELITKYPEIFNYSTIW 212

Query: 216 KFRY--------RNRIITNHNKLLNKMHN--IDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
                       +   ++N NKLL    N  + G+KTG T  + + +  + R     ++A
Sbjct: 213 MENITHVTKQGTKKFGLSNTNKLLKMATNFEVTGLKTGSTSTAKYCLSATARKDGVELIA 272

Query: 266 VVMGMPTSQERDQKALELITSFLEKKTLKHQQ 297
           V++  P  + R   A+ L+        L   +
Sbjct: 273 VILAAPDYKARFNDAVTLLNYGYANCRLYTDE 304


>gi|325137739|gb|EGC60314.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
           ES14902]
          Length = 389

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 76/271 (28%), Positives = 147/271 (54%), Gaps = 16/271 (5%)

Query: 35  LFLSIIMISMASELHAKPKYSS--------------IVIDVNKNQMTGFKQ-DEPRYPAS 79
           + L I   + AS    KP   +              IVID+   Q+   K  + P  PA+
Sbjct: 13  IILGISHATAASPAPNKPAVHAAPTFQTPETLTAAHIVIDLQSKQILSAKNINTPVEPAA 72

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LT++MT Y++F+ ++S  +     + + ++A     S+++++     +T++ +  +I  S
Sbjct: 73  LTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALS 132

Query: 140 ANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           AND +      +  GS + F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A+L 
Sbjct: 133 ANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLALLS 192

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             L ++FP+YY  FSI+ F+++N    N N LL + +N++G+K G+T + G+N+  S   
Sbjct: 193 EALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSG 252

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLE 289
               I+ + +G  +++ R     +L+   L+
Sbjct: 253 NGRHILVITLGSESAETRASDNSKLLNWALQ 283


>gi|317121890|ref|YP_004101893.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591870|gb|ADU51166.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
           marianensis DSM 12885]
          Length = 541

 Score =  252 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 14/232 (6%)

Query: 63  KNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK 121
             Q+         R PAS TK++T  +  EY      +L+  + VS+ AA+   S + L 
Sbjct: 215 SGQVLWAHNPHQRRAPASTTKILTAIVALEYG-----NLDDTVTVSEYAASTEGSTMDLS 269

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
               +T  + +  L+  S ND + A  E ISGSE  FA LM+  A ++G+++T + N  G
Sbjct: 270 AGERYTLRELLWGLMLESGNDAAVAIAEHISGSEAAFARLMNETALRLGLRDTHFTNPHG 329

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RIITNHNKLLNKMHN 236
           LHD    TTA D A++      N           K   R      RI+++ N+LL     
Sbjct: 330 LHDPGHYTTAYDLAVMTRYALANDYFARLVCQPEKVLCRGDGDWVRILSSTNRLLWYREW 389

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           I G+KTG T  +G  +V+S       ++AVV+    S +R   +  L+    
Sbjct: 390 IRGVKTGTTNAAGPCLVSSGERDGRRLIAVVL---DSGDRWADSERLLEWGF 438


>gi|239833080|ref|ZP_04681409.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium
           LMG 3301]
 gi|239825347|gb|EEQ96915.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium
           LMG 3301]
          Length = 389

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 90/285 (31%), Positives = 151/285 (52%), Gaps = 9/285 (3%)

Query: 56  SIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           SI +DV   ++   +   +  YPASLTKMMT Y+ F  LQS ++ L + + ++  AA + 
Sbjct: 46  SIAVDVATGKVYAQQDAFQRWYPASLTKMMTAYVAFRALQSGQMTLESPVRMTVNAAKEP 105

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           PSK+  K  +  T +  +  ++ +SANDV+ A  E + G+E  F   M+ +A++IGM  +
Sbjct: 106 PSKMGYKPGSVMTLDSALKIMLVKSANDVAVAVAEAVGGTESAFVQRMNAEAQRIGMVGS 165

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLN 232
            + N +GLHD    TTARD A+L + LR+ FPQY  YF+          ++  N+N LL 
Sbjct: 166 HFANPNGLHDPQNYTTARDLAVLAVQLRREFPQYAHYFATEAIDPGAGKKVQANYNILLG 225

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK-- 290
           +    DG+KTG+   SGFN+ +S       ++A+V+G    + R  +A +L+T       
Sbjct: 226 RYDGADGMKTGFVCASGFNLASSATRNGRTVLAIVLGADRQEARAVQAAQLMTDAFRASA 285

Query: 291 ---KTLKHQQTHRKDNL-SSTSLKKSLMIKKLKRTYSQFKKIDAK 331
               TL   +     NL  +T ++K++  ++        + ++ K
Sbjct: 286 GGGATLATLRPTGGGNLNQATDMRKAICSQEAMADRWDGRDVEGK 330


>gi|17987273|ref|NP_539907.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
           16M]
 gi|23501872|ref|NP_697999.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330]
 gi|161618945|ref|YP_001592832.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC
           23365]
 gi|163843260|ref|YP_001627664.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445]
 gi|225627469|ref|ZP_03785506.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo]
 gi|225852496|ref|YP_002732729.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC
           23457]
 gi|254689222|ref|ZP_05152476.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
           str. 870]
 gi|254693707|ref|ZP_05155535.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
           str. Tulya]
 gi|254701743|ref|ZP_05163571.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
           513]
 gi|254704285|ref|ZP_05166113.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
           686]
 gi|254706813|ref|ZP_05168641.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M163/99/10]
 gi|254710077|ref|ZP_05171888.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           B2/94]
 gi|254730255|ref|ZP_05188833.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
           str. 292]
 gi|256031573|ref|ZP_05445187.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M292/94/1]
 gi|256044652|ref|ZP_05447556.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256113538|ref|ZP_05454364.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
           str. Ether]
 gi|256257472|ref|ZP_05463008.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
           str. C68]
 gi|256264013|ref|ZP_05466545.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
           str. 63/9]
 gi|256369413|ref|YP_003106921.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915]
 gi|260168704|ref|ZP_05755515.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. F5/99]
 gi|260563998|ref|ZP_05834484.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
           16M]
 gi|260566468|ref|ZP_05836938.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40]
 gi|260754727|ref|ZP_05867075.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
           str. 870]
 gi|260757950|ref|ZP_05870298.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
           str. 292]
 gi|260883748|ref|ZP_05895362.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
           str. C68]
 gi|261213979|ref|ZP_05928260.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
           str. Tulya]
 gi|261314280|ref|ZP_05953477.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M163/99/10]
 gi|261317626|ref|ZP_05956823.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           B2/94]
 gi|261752296|ref|ZP_05996005.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
           513]
 gi|261754953|ref|ZP_05998662.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
           686]
 gi|261758181|ref|ZP_06001890.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99]
 gi|265988661|ref|ZP_06101218.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M292/94/1]
 gi|265991076|ref|ZP_06103633.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265994911|ref|ZP_06107468.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
           str. Ether]
 gi|297248317|ref|ZP_06932035.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
           5/6) [Brucella abortus bv. 5 str. B3196]
 gi|17982950|gb|AAL52171.1| d-alanyl-d-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
           16M]
 gi|23347810|gb|AAN29914.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330]
 gi|161335756|gb|ABX62061.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC
           23365]
 gi|163673983|gb|ABY38094.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445]
 gi|225617474|gb|EEH14519.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo]
 gi|225640861|gb|ACO00775.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC
           23457]
 gi|255999573|gb|ACU47972.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915]
 gi|260154014|gb|EEW89106.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
           16M]
 gi|260155986|gb|EEW91066.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40]
 gi|260668268|gb|EEX55208.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
           str. 292]
 gi|260674835|gb|EEX61656.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
           str. 870]
 gi|260873276|gb|EEX80345.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
           str. C68]
 gi|260915586|gb|EEX82447.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
           str. Tulya]
 gi|261296849|gb|EEY00346.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           B2/94]
 gi|261303306|gb|EEY06803.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M163/99/10]
 gi|261738165|gb|EEY26161.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99]
 gi|261742049|gb|EEY29975.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
           513]
 gi|261744706|gb|EEY32632.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
           686]
 gi|262766024|gb|EEZ11813.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
           str. Ether]
 gi|263001860|gb|EEZ14435.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263094156|gb|EEZ18078.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
           str. 63/9]
 gi|264660858|gb|EEZ31119.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
           M292/94/1]
 gi|297175486|gb|EFH34833.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
           5/6) [Brucella abortus bv. 5 str. B3196]
 gi|326409012|gb|ADZ66077.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis M28]
 gi|326538722|gb|ADZ86937.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis
           M5-90]
          Length = 396

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 70/239 (29%), Positives = 123/239 (51%), Gaps = 6/239 (2%)

Query: 56  SIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +++ID     +   K  D+P  PASL K+MT  ++FE L+  +  L T  PVS+ A    
Sbjct: 42  ALLIDDRSGTVLLSKGADKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEYAWRTG 101

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S ++ + K+  T    +  +I +SAND +    E ++GSE+ FA  M+ +AK++
Sbjct: 102 GAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQRAKEL 161

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+ ++ + N++GL    Q+ T  D   L   +    P+YY+Y+    + + N    N N 
Sbjct: 162 GLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIHAAHPEYYRYYEQPAYTWNNITQRNRNP 221

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           LL      DG+ TG+T  SG+ +V S       +   + G+ + +ER+++A +LI   +
Sbjct: 222 LLRLEVGADGMGTGFTEASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLIQWGM 280


>gi|328676052|gb|AEB28727.1| D-alanyl-D-alanine carboxypeptidase [Francisella cf. novicida 3523]
          Length = 444

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 83/334 (24%), Positives = 138/334 (41%), Gaps = 59/334 (17%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + + ++     +   K  D  R PASLTK+MT YI+   +++  L  +T IP+S+ AA
Sbjct: 54  APAWVAMNYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMIPISENAA 113

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   SK+Y+K     + +  +  +   S ND + A  E+I G+ + F  LM+  AK IGM
Sbjct: 114 STGGSKMYVKAGAKVSVKNLVTGMDVVSGNDATIALAEYIGGTTEAFTDLMNQTAKAIGM 173

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII------- 224
            NT + N  GL    Q TTA D A+L      NFP+ YK +  +   +            
Sbjct: 174 NNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQDSVSIAD 233

Query: 225 ---------------------------------------------TNHNKLLNKMHNIDG 239
                                                         N N+LL      DG
Sbjct: 234 RKQCLPKFDRATGNVIESYTTKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLFTFDGADG 293

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK------KTL 293
           +KTG+T  +G+ +V+S +   +  ++VV+G  +S +RD ++ +L+   L K         
Sbjct: 294 MKTGHTDAAGYCLVSSAKQDGERFISVVLGTTSSAKRDSESAKLLRYALSKYENVLLYKA 353

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
               T   DN+ +    + + +   +  Y    K
Sbjct: 354 NSPVTISADNIPNAKAGQKITVTSNQNIYKTVPK 387


>gi|148559355|ref|YP_001258933.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840]
 gi|148370612|gb|ABQ60591.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840]
          Length = 396

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 70/239 (29%), Positives = 123/239 (51%), Gaps = 6/239 (2%)

Query: 56  SIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +++ID     +   K  D+P  PASL K+MT  ++FE L+  +  L T  PVS+ A    
Sbjct: 42  ALLIDDRSGTVLLSKGADKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEYAWRTG 101

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S ++ + K+  T    +  +I +SAND +    E ++GSE+ FA  M+ +AK++
Sbjct: 102 GAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQRAKEL 161

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+ ++ + N++GL    Q+ T  D   L   +    P+YY+Y+    + + N    N N 
Sbjct: 162 GLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIHAAHPEYYRYYEQPAYTWNNITQRNRNP 221

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           LL      DG+ TG+T  SG+ +V S       +   + G+ + +ER+++A +LI   +
Sbjct: 222 LLRLEVGADGMGTGFTEASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLIQWGM 280


>gi|103486742|ref|YP_616303.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingopyxis alaskensis
           RB2256]
 gi|98976819|gb|ABF52970.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingopyxis alaskensis
           RB2256]
          Length = 273

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 69/265 (26%), Positives = 128/265 (48%), Gaps = 14/265 (5%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---- 111
           ++ D+    +   +  + R+ PAS+ K+MT Y++ + L++++L  +T   VS        
Sbjct: 1   MLKDMESGAILFSRGADKRFAPASMAKVMTAYVVLDLLKTRELRRDTTFTVSDAVWRKWN 60

Query: 112 -TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   S ++L      + +  +  LIT SAND +    E I GSE+ F   M+  A  IG
Sbjct: 61  SSTGGSTMFLSPGEKLSVDDLLKGLITVSANDAAAVLAEGIDGSEEAFVRRMNKVAADIG 120

Query: 171 MQNTIYKNASGLHDKN-QITTARDQAILGILLRKNFPQ-YYKYFSIRKFRY------RNR 222
           M ++ +   +G  D      +A D   L   L ++ P  Y +YFSI K ++      R  
Sbjct: 121 MASSHFGTPNGWPDGGVTKVSAADLITLADRLIRDHPDGYARYFSIPKLQHGVAPDGRPI 180

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           +  N N +L+++   DG+KTG+TR +G+  + S       ++ VV G+P++  R ++A  
Sbjct: 181 VQPNRNPILDRVDGADGLKTGHTREAGYCFLGSAERDGRRLIMVVAGLPSANARREEAQR 240

Query: 283 LITSFLEKKTLKHQQTHRKDNLSST 307
           L+         +     R+ + S++
Sbjct: 241 LMDWGFAAAAHRMAAETRRGSASTS 265


>gi|312113074|ref|YP_004010670.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311218203|gb|ADP69571.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 367

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 89/282 (31%), Positives = 139/282 (49%), Gaps = 18/282 (6%)

Query: 18  PYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
            Y S+  +  + L G   FL     ++A          +++ +     +   +  + P  
Sbjct: 1   MYASLSKKTQLILCGMAAFLFGAQGAVAGP--------ALLTEPATGLVLYAEDADLPWR 52

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASLTK+MT Y+ FE ++  +L     +  +  + +Q PSK  L        +  I ALI
Sbjct: 53  PASLTKLMTAYLTFEAIRDGRLSPEDMLTSTALSRSQPPSKFGLPLGAQIKVDLAIKALI 112

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD---------KNQ 187
            +SANDV+    E I GS + F   M+  AK++GM NT + N +GL           +  
Sbjct: 113 VKSANDVAIMLAEKIGGSSEAFVDQMNRTAKRLGMTNTKFVNPNGLPQFNPDGTETPEQA 172

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRN 247
           +TTARD A+L  ++ K FPQY   FS+ + R  NR++T+HN +L      DG+KTG+   
Sbjct: 173 VTTARDMALLSNMILKEFPQYTPIFSMTEVRVGNRLLTSHNGILKSYDGADGMKTGFVCA 232

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           +G+N+V S       +VAVV+G  +S  R  +A  L     E
Sbjct: 233 AGYNVVASATRNGRQLVAVVLGERSSGARTIRAAALFEHGFE 274


>gi|323484906|ref|ZP_08090261.1| hypothetical protein HMPREF9474_02012 [Clostridium symbiosum
           WAL-14163]
 gi|323693651|ref|ZP_08107850.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum
           WAL-14673]
 gi|323401787|gb|EGA94130.1| hypothetical protein HMPREF9474_02012 [Clostridium symbiosum
           WAL-14163]
 gi|323502265|gb|EGB18128.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum
           WAL-14673]
          Length = 404

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 77/272 (28%), Positives = 136/272 (50%), Gaps = 15/272 (5%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSK 96
           +++  +   E+ A     +I+I+ +   +   K  DE R PAS+TK+MTL +IF+ L+S 
Sbjct: 36  AMVQAADGPEIQAPD---AILIEASTGTVIYEKNADEARNPASVTKIMTLLLIFDALKSG 92

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           K+HL+ ++  S  A +   S+++L+E    T E  I  ++  S ND S A  E+I G E 
Sbjct: 93  KIHLDDEVVTSAHAKSMGGSQVFLEEGEIQTVETLIKCIVIASGNDASVAMAEYIGGDEA 152

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDK-NQITTARDQAILGILLRKNFPQYYKYFSIR 215
            F  +M+ +AK +GM+N  +++  GL D      +ARD A++   L   +P+ + Y +I 
Sbjct: 153 TFVKMMNERAKGLGMENANFEDCCGLTDSTTHAMSARDIALMTKELITKYPEIFNYSTIW 212

Query: 216 KFRY--------RNRIITNHNKLLNKMHN--IDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
                       +   ++N NKLL    N  + G+KTG T  + + +  + R     ++A
Sbjct: 213 MENITHVTKQGTKEFGLSNTNKLLKMATNFEVTGLKTGSTSLAKYCLSATARKDGVELIA 272

Query: 266 VVMGMPTSQERDQKALELITSFLEKKTLKHQQ 297
           V++  P  + R   AL L+        +   +
Sbjct: 273 VILAAPDFKARFGDALTLLNYGYANCRMYRDE 304


>gi|256061084|ref|ZP_05451239.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
 gi|261325086|ref|ZP_05964283.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
 gi|261301066|gb|EEY04563.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
          Length = 396

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 70/239 (29%), Positives = 123/239 (51%), Gaps = 6/239 (2%)

Query: 56  SIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +++ID     +   K  D+P  PASL K+MT  ++FE L+  +  L T  PVS+ A    
Sbjct: 42  ALLIDDRSGTVLLSKGADKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEYAWRTG 101

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S ++ + K+  T    +  +I +SAND +    E ++GSE+ FA  M+ +AK++
Sbjct: 102 GAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQRAKEL 161

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+ ++ + N++GL    Q+ T  D   L   +    P+YY+Y+    + + N    N N 
Sbjct: 162 GLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIHAAHPEYYRYYEQPAYTWNNITQRNRNP 221

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           LL      DG+ TG+T  SG+ +V S       +   + G+ + +ER+++A +LI   +
Sbjct: 222 LLRLEVGADGMGTGFTEASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLIQWGM 280


>gi|332977394|gb|EGK14172.1| serine-type D-Ala-D-Ala carboxypeptidase [Desmospora sp. 8437]
          Length = 377

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 123/285 (43%), Gaps = 20/285 (7%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAK-------PKYSSIVIDVNKNQMTGFKQD-EPRYP 77
           R  + +  +    ++++  A  L +           ++ VIDV   ++   K+  +    
Sbjct: 2   RLTRWLLAVWIGGVLVLLPAESLASHRPDHLELSARAAAVIDVQSGRILYEKKAGQQMRI 61

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT  +  E        L  ++ V   A     S +YLK       E  +  L+ 
Sbjct: 62  ASLTKIMTAIVAIENSD-----LTEKVKVKPGAVGVEGSSIYLKPGEEIPLEHLLYGLML 116

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           RS ND + A  E + GS + F   M+ KA+ +G++NT ++N  GL  K   ++A D A L
Sbjct: 117 RSGNDAAVAIAEHVGGSVEGFVYKMNEKAEYLGLRNTHFQNPHGLDAKEHYSSAEDLARL 176

Query: 198 GILLRKNFPQYYKYFSI--RKFRYRN----RIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
                KN P++ K  S   +   +      R   N NK+L      DG+KTG+T+ S   
Sbjct: 177 TAYALKN-PEFRKIVSTQVKTVPWPGEEWHRKWYNKNKMLRLYPGGDGVKTGFTKLSRRT 235

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQ 296
           +V+S   +   I  V +  P   E   + LE      ++  L  +
Sbjct: 236 LVSSATREGRQIATVTLNAPNDWEDSMRLLEYGFRHFQRVRLVKK 280


>gi|306843866|ref|ZP_07476461.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO1]
 gi|306275621|gb|EFM57345.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO1]
          Length = 396

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 70/239 (29%), Positives = 125/239 (52%), Gaps = 6/239 (2%)

Query: 56  SIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +++ID     +   K  D+P  PASL K+MT  ++FE L+  +  L T  PVS+ A    
Sbjct: 42  ALLIDDRSGTVLLSKGADKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEYAWRTG 101

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S ++ + K+  T    +  +I +SAND +    E ++GSE+ FA+ M+ +AK++
Sbjct: 102 GAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAVAMNQRAKEL 161

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+ ++ + N++GL    Q+ T  D   L   +    P+YY+Y++   + + N    N N 
Sbjct: 162 GLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIHAAHPEYYRYYAQPAYTWNNITQRNRNP 221

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           LL      DG+ TG+T  SG+ +V S       +   + G+ + +ER+++A +LI   +
Sbjct: 222 LLRLEVGADGMGTGFTEASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLIQWGM 280


>gi|229077103|ref|ZP_04209808.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock4-18]
 gi|228706203|gb|EEL58487.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock4-18]
          Length = 453

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 86/364 (23%), Positives = 163/364 (44%), Gaps = 38/364 (10%)

Query: 1   MLQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKI-LFLSIIMI---SMASELHA--KPKY 54
           ML+++  S+  K         ++ +R I ++  I LF SI++    + A  + A      
Sbjct: 1   MLEERFLST--KILEVTEVKGMFCKRFIAIVTVITLFCSIVVAFGRAAAETVSAIDVEAG 58

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           S+I+I+ +  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S+ A   
Sbjct: 59  SAILIEESSGKILYEKNADESLAIASMTKMMSEYLVHEAMDKGKLKWDQKVKISEYAHKI 118

Query: 111 -ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
              ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ 
Sbjct: 119 SQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIAGKEVNFVKMMNDKSKEF 178

Query: 170 GMQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           GM++  + NA+GL               D+    +ARD AIL   L ++FP+      I 
Sbjct: 179 GMKHYKFVNATGLTNQDLKGYHPEGTTLDEKNKMSARDCAILAQRLIQDFPKILDTAKIP 238

Query: 216 KFRYRN-----RIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           K  ++        + N N +L     +   +DG+KTG T  +G     ++      +++V
Sbjct: 239 KKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISV 298

Query: 267 VMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
           V+   +   R  +  +L         +K  + + KD +        +   K K    Q K
Sbjct: 299 VIKANSHTARFDETKKLYDYGFANFEVK--KVYGKDAVVKGHETVRVANAKDKDVVVQTK 356

Query: 327 KIDA 330
           +  +
Sbjct: 357 QAVS 360


>gi|225174843|ref|ZP_03728840.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
           AHT 1]
 gi|225169483|gb|EEG78280.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
           AHT 1]
          Length = 371

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 76/267 (28%), Positives = 128/267 (47%), Gaps = 13/267 (4%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHL 100
           +++A E       +++++D    ++   K    R P AS TK+MT  +  E  +     L
Sbjct: 19  LAVAMETPDVTARAAVLLDQETGRILFSKNAHERLPMASTTKIMTAILAIESGR-----L 73

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
           +  + VS+ A+    S + L      T E+ +  L+ RS ND +TA  E ++GS +KFA 
Sbjct: 74  DEMVTVSEYASLVEGSGVDLDAGEQKTLEELLYGLMLRSGNDAATAIAEHLAGSVEKFAR 133

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI------ 214
            M+ +A ++G   T ++N  GL  +N  TTA D  I+ +    + P++ +  +       
Sbjct: 134 QMTRRAGELGAAQTRFENPHGLEAENHYTTAYDLGIIAVYAM-SLPEFREVVATSEKRIS 192

Query: 215 RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
              R  +RI+ N NKLL+     DGIKTG+T  +G   V S       +V+VV+  P   
Sbjct: 193 WTGRPYDRILYNQNKLLDMYEYADGIKTGWTTPAGRCFVGSSNKDGWGLVSVVLNAPQMW 252

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRK 301
           E   + +E   S+   + L  +  H K
Sbjct: 253 EDTIELMEFGYSYYHWEPLVEEGRHLK 279


>gi|15676773|ref|NP_273918.1| penicillin-binding protein [Neisseria meningitidis MC58]
 gi|7226115|gb|AAF41288.1| penicillin-binding protein [Neisseria meningitidis MC58]
 gi|316985771|gb|EFV64715.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           meningitidis H44/76]
 gi|325139970|gb|EGC62499.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
           CU385]
 gi|325200438|gb|ADY95893.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
           H44/76]
          Length = 389

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 77/274 (28%), Positives = 151/274 (55%), Gaps = 14/274 (5%)

Query: 30  LMGKILFLSIIMISMA----SELHAKPKY--------SSIVIDVNKNQMTGFKQ-DEPRY 76
           L+  IL +S    +        +HA P +        + IVID+   Q+   K  + P  
Sbjct: 10  LLSIILGVSHATAASPAPNRPTVHAAPTFQTPETLTAAHIVIDLQSKQILSAKNINTPVE 69

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PA+LT++MT Y++F+ ++S  +     + + ++A     S+++++     +T++ +  +I
Sbjct: 70  PAALTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMI 129

Query: 137 TRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
             SAND +      +  GS + F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A
Sbjct: 130 ALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLA 189

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           +L   L ++FP+YY  FSI+ F+++N    N N LL + +N++G+K G+T + G+N+  S
Sbjct: 190 LLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVS 249

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
                  I+ + +G  +++ R     +L+   L+
Sbjct: 250 YSGNGRHILVITLGSESAETRASDNSKLLNWALQ 283


>gi|325144238|gb|EGC66544.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
           M01-240013]
          Length = 389

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 146/271 (53%), Gaps = 16/271 (5%)

Query: 35  LFLSIIMISMASELHAKPKYSS--------------IVIDVNKNQMTGFKQ-DEPRYPAS 79
           + L +   + AS    KP   +              IVID+   Q+   K  + P  PA+
Sbjct: 13  IILGVSHATAASPAPNKPAVHAAPTFQTPETLTAAHIVIDLQSKQILSAKNINTPVEPAA 72

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LT++MT Y++F+ ++S  +     + + ++A     S+++++     +T++ +  +I  S
Sbjct: 73  LTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALS 132

Query: 140 ANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           AND +      +  GS + F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A L 
Sbjct: 133 ANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLS 192

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             L ++FP+YY  FSI+ F+++N    N N LL + +N++G+K G+T + G+N+  S   
Sbjct: 193 EALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSG 252

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLE 289
               I+ + +G  +++ R     +L+   L+
Sbjct: 253 NGRHILVITLGSESAETRASDNSKLLNWALQ 283


>gi|228989223|ref|ZP_04149217.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus pseudomycoides DSM 12442]
 gi|228770498|gb|EEM19068.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus pseudomycoides DSM 12442]
          Length = 444

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 81/355 (22%), Positives = 159/355 (44%), Gaps = 48/355 (13%)

Query: 20  GSIYIQRNIQLMGKI-LFLSIIMI--SMASELHAK---PKYSSIVIDVNKNQMTGFKQ-D 72
             ++ +R I ++  + LF S+ +   S ++E  A       ++I+++ +  ++   K  D
Sbjct: 7   KGMFCKRFIAMVTVLTLFCSMFVTYGSASAETGAALNVEAGAAILVEADSGKILYQKNAD 66

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTT 128
           E    AS+TKMM+ Y++ E +   KL  + ++ VS+ A      ++ S + L+    +T 
Sbjct: 67  ELLAIASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAHMISQDRSLSNVPLENGGSYTV 126

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------ 182
           ++   A+   SAN  + A  E I+G E  F  +M++KAK++G++N  + N++GL      
Sbjct: 127 KELYEAMAIYSANGATIALAEAIAGKEADFVKMMNDKAKELGLKNYKFVNSTGLTNHDLK 186

Query: 183 --------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----IITNHNK 229
                    D+    +ARD AIL   L ++FP+  +   I K  ++        + N N 
Sbjct: 187 GQQPEGTTPDEENKMSARDCAILAQHLIQDFPKVLETAKIPKKVFQEGGKYPVKMDNWNW 246

Query: 230 LLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +L         +DG+KTG T  +G     +       +++VV+   +   R  +  +L  
Sbjct: 247 MLKGLVKEYEGVDGLKTGSTPEAGDCFTGTAERNGMRLISVVIKTNSHTARFDETKKLFD 306

Query: 286 SFLEK----------KTLKHQQTHRKDNLSSTSL----KKSLMIKKLKRTYSQFK 326
                            +K  +T R +N     +    K+++ +  LK +   +K
Sbjct: 307 YGFTNFEVKKVYPKGSAVKGHETVRVENAKDKDVTIQTKQAIALPMLKGSKDVYK 361


>gi|325127981|gb|EGC50880.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
           N1568]
          Length = 389

 Score =  252 bits (643), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 146/271 (53%), Gaps = 16/271 (5%)

Query: 35  LFLSIIMISMASELHAKPKYSS--------------IVIDVNKNQMTGFKQ-DEPRYPAS 79
           + L +   + AS    KP   +              IVID+   Q+   K  + P  PA+
Sbjct: 13  IILGVSHATAASPAPNKPAVHAAPTFQTPETLTAAHIVIDLQSKQILSAKNINTPVEPAA 72

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LT++MT Y++F+ ++S  +     + + ++A     S+++++     +T++ +  +I  S
Sbjct: 73  LTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALS 132

Query: 140 ANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           AND +      +  GS + F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A L 
Sbjct: 133 ANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLS 192

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             L ++FP+YY  FSI+ F+++N    N N LL + +N++G+K G+T + G+N+  S   
Sbjct: 193 EALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSG 252

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLE 289
               I+ + +G  +++ R     +L+   L+
Sbjct: 253 NGRHILVITLGSESAETRASDNSKLLNWALQ 283


>gi|254719069|ref|ZP_05180880.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
 gi|265984060|ref|ZP_06096795.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
 gi|306838351|ref|ZP_07471196.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. NF 2653]
 gi|264662652|gb|EEZ32913.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
 gi|306406491|gb|EFM62725.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. NF 2653]
          Length = 396

 Score =  252 bits (643), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 70/239 (29%), Positives = 124/239 (51%), Gaps = 6/239 (2%)

Query: 56  SIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +++ID     +   K  D+P  PASL K+MT  ++FE L+  +  L T  PVS+ A    
Sbjct: 42  ALLIDDRSGTVLLSKGADKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEYAWRTG 101

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S ++ + K+  T    +  +I +SAND +    E ++GSE+ FA  M+ +AK++
Sbjct: 102 GAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQRAKEL 161

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+ ++ + N++GL    Q+ T  D   L   +    P+YY+Y++   + + N    N N 
Sbjct: 162 GLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIHAAHPEYYRYYAQPAYTWNNITQRNRNP 221

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           LL      DG+ TG+T  SG+ +V S       +   + G+ + +ER+++A +LI   +
Sbjct: 222 LLRLEVGADGMGTGFTEASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLIQWGM 280


>gi|121535743|ref|ZP_01667545.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus
           carboxydivorans Nor1]
 gi|121305642|gb|EAX46582.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus
           carboxydivorans Nor1]
          Length = 378

 Score =  252 bits (643), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 84/274 (30%), Positives = 134/274 (48%), Gaps = 17/274 (6%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
           + R   +   I  L +     ++ L    K S+IVI+ +  ++   K  E  RYPAS TK
Sbjct: 1   MLRRGLIPWLIALLVLPNTGWSAPLDLTAK-SAIVIEASTGKVLYAKDAETKRYPASTTK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           MMTL +  E+      +LN  +  S  AA+   S L+L           +  ++  S ND
Sbjct: 60  MMTLIVALEHG-----NLNDIVTTSANAASTEGSSLWLAPGEQLKLLDMLYGVMLVSGND 114

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E ISGS +KFA LM+ KA  IG  NT + N+SGL D N  TTA D A +     
Sbjct: 115 ATVAVAEHISGSVEKFARLMTEKAHAIGATNTNFTNSSGLPDPNHYTTAHDLAKIAAYGY 174

Query: 203 KNFPQYYKYFSIRK------FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           KN P + +  S +        +  +R + N NK+L      +G+KTGYT  +G  +V+  
Sbjct: 175 KN-PFFAEIVSTKHKVIPWPGKDHDRDLYNENKMLWLYDGANGVKTGYTEAAGPCLVSGA 233

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +  +  ++AVV+    S+   ++++ L+    ++
Sbjct: 234 KRNNIQLIAVVL---DSERMWEESMALLDYGFKQ 264


>gi|121533591|ref|ZP_01665418.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus
           carboxydivorans Nor1]
 gi|121307582|gb|EAX48497.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus
           carboxydivorans Nor1]
          Length = 384

 Score =  252 bits (643), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 114/252 (45%), Gaps = 19/252 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++++D    Q+   K    R  PAS TK++T  I  E  +     L+  + VS  AA  
Sbjct: 33  AAVLMDAKTGQVLYDKDMHKRSAPASTTKILTAIIAIESGR-----LDEVVRVSPRAAGT 87

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S + L      T  + +  L+ RS ND + A  E ++GS + FA +M+ +A++IG  N
Sbjct: 88  GGSSMNLYAGQTLTLRELVTGLMLRSGNDAAVAIAEHLAGSVEAFAAVMNKRAQEIGAVN 147

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY---------RNRII 224
           + + N  GL      +TA D A L      N P + +  S ++            R+R +
Sbjct: 148 SHFVNPHGLTAPGHFSTAFDLAWLARYALTN-PVFGQIVSTKETTIEWLDRSGRERDRNL 206

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            N NKLL  +   DG+KTG T  +G  +V S    +  ++AVV+       R   ++ L+
Sbjct: 207 RNTNKLLWMLEEADGVKTGTTSEAGPCLVASATRGNQRLIAVVL---HDHARWYNSMMLL 263

Query: 285 TSFLEKKTLKHQ 296
               +   L   
Sbjct: 264 KHGFDNYDLYDY 275


>gi|296132902|ref|YP_003640149.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola sp. JR]
 gi|296031480|gb|ADG82248.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola potens JR]
          Length = 372

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 131/295 (44%), Gaps = 20/295 (6%)

Query: 32  GKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPR-YPASLTKMMTLY 87
             I+F +I ++   + L  +P  S+   +++D N  Q+   K    R  PAS TK++T  
Sbjct: 6   AGIIFFTIFLLKANTCLAWQPAVSADAAVLMDANTGQVLYAKNAHKRRPPASTTKILTGI 65

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           +  +            + VS  AA    S +YL      T ++ I   + +S ND   A 
Sbjct: 66  LALDMGNPA-----ETVVVSPRAAAVGESSIYLSAGEKLTLDELIQGALMKSGNDACAAI 120

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E I GS + F+ LM+ KAK +G  N+ + N  GL  KN  +TA D A++     +N  +
Sbjct: 121 AEHIGGSIEMFSQLMNLKAKMLGAWNSNFINPHGLPAKNHYSTAYDLALIARYAMQN-RR 179

Query: 208 YYKYFSIRKFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           + +  + ++          NR + N NKLL +    DGIKTG T+ +G  +V+S      
Sbjct: 180 FAEIVAQKEKEIDWYGQSWNRHLKNTNKLLWRYIWADGIKTGTTKAAGQCLVSSASKDCR 239

Query: 262 PIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIK 316
            ++AVV+    S +R   +++L            Q     +      +K  L  K
Sbjct: 240 KLIAVVL---KSGDRYGDSIQLFEYGFNNY-YYQQVAVAGEYFGYADVKNGLYPK 290


>gi|15612584|ref|NP_240887.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus halodurans
           C-125]
 gi|10172633|dbj|BAB03740.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus halodurans
           C-125]
          Length = 444

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 137/300 (45%), Gaps = 33/300 (11%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLT 81
           +I      M   +F   +  + A EL A+   S+I++D    ++   K  +   P AS+T
Sbjct: 9   FILVLAMAMVFSMFTPAMTANAAFELEAE---SAILVDAESGKILYGKNIDAVLPTASMT 65

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALIT 137
           KMM+ Y+I E +   ++  + ++P+S            S + L++   +T ++   ++  
Sbjct: 66  KMMSEYLILEAINEGEISWDQEVPISDYVRELSLYVQLSNVPLRQDETYTVKELYESVAI 125

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN----------- 186
            SAN  + A  E I+GSE  F   M+ K +++G+++  + N+SGL++K+           
Sbjct: 126 YSANASTIALAELIAGSESAFVQRMNEKGEELGLEDFKFVNSSGLNNKDLLGNHPEGTDA 185

Query: 187 ---QITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NRIITNHNKLLNK----- 233
               + +AR  A L   L K++P+  +  SI +  +R        + N N +L       
Sbjct: 186 NAENVMSARATAKLAYNLLKDYPEVLETASIPEKTFRAGEGEEIEMENWNWMLKGIRPQH 245

Query: 234 -MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
               IDG+KTGYT  +G     +       +++VVM   T  +R ++  +L+       T
Sbjct: 246 DYEGIDGLKTGYTAEAGNCFTGTAERNGMRLISVVMRTETRDDRFKETAKLLDYGFNNFT 305


>gi|229011746|ref|ZP_04168928.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus mycoides DSM 2048]
 gi|228749543|gb|EEL99386.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus mycoides DSM 2048]
          Length = 442

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 81/351 (23%), Positives = 156/351 (44%), Gaps = 36/351 (10%)

Query: 14  FLTYPYGSIYIQRNIQLMGKI-LFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMT 67
                  S++ +R I ++  + LF S+ +    +     P       S+I+++ N  ++ 
Sbjct: 1   MEVTEVKSMFCKRFITIVTVLTLFCSMAVTFGRASAETVPAIDVEAGSAILVEANSGKIL 60

Query: 68  GFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKE 122
             K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S+ A      ++ S + L+ 
Sbjct: 61  YQKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAYKISQDRSLSNVPLEN 120

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
              +T ++   A++  SAN  + A  E I+G E  F  +M++K+K+ GM+N  + N++GL
Sbjct: 121 GGSYTVKELYEAMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGL 180

Query: 183 --------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RI 223
                          D+    +ARD AIL   L ++FP+      I K  ++        
Sbjct: 181 TNHDLKGHHPEGTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQKGGKYPID 240

Query: 224 ITNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           +TN N +L     +   +DG+KTG T  +G     ++      +++VV+   +   R  +
Sbjct: 241 MTNFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVEKNGMRLISVVIKANSHTARFDE 300

Query: 280 ALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
             +L         +K  + + KD++        +   K K    Q K+  +
Sbjct: 301 TKKLYDYGFANFEVK--KVYGKDSVVKGHETVRVANAKDKDIVVQTKQAVS 349


>gi|326402423|ref|YP_004282504.1| serine-type D-Ala-D-Ala carboxypeptidase [Acidiphilium multivorum
           AIU301]
 gi|325049284|dbj|BAJ79622.1| serine-type D-Ala-D-Ala carboxypeptidase [Acidiphilium multivorum
           AIU301]
          Length = 422

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 72/267 (26%), Positives = 128/267 (47%), Gaps = 3/267 (1%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQS 95
           L+I  + M   L  +   S +++D +   +   K  D+P  PASLTK+MT Y+ ++ +  
Sbjct: 64  LAIPGVPMPPTLPQQA--SYVLMDADTGAVIAAKAPDQPWPPASLTKLMTAYLTYQAVAH 121

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
             L ++  +PVS +A     S++++      T +Q +  LI  S ND + A  + ++GS 
Sbjct: 122 GSLKMDQTVPVSVSAWHTGGSRMFISPGMTVTVDQLLHGLIIDSGNDAAVALAQAVAGSR 181

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             F  LM+++AK +G+++T Y N  GL + +  TTA D A L   + + +PQ+ K    +
Sbjct: 182 SGFVGLMNHEAKALGLKSTHYTNVDGLPNPDLRTTAMDVAKLSRDIVRTYPQFLKISVKK 241

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
            F +      + N +L     +DG+KTG T+ +G  I  +       ++AVV+G P+   
Sbjct: 242 HFTFDKIRQRSWNPVLFHDPTVDGLKTGRTKEAGHCIDATALRNGRRLIAVVLGGPSWTV 301

Query: 276 RDQKALELITSFLEKKTLKHQQTHRKD 302
                  L+    +           K 
Sbjct: 302 STHDIEALLDYGYQFYANAKVAVAGKP 328


>gi|148259268|ref|YP_001233395.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidiphilium cryptum
           JF-5]
 gi|146400949|gb|ABQ29476.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
           [Acidiphilium cryptum JF-5]
          Length = 423

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 72/267 (26%), Positives = 128/267 (47%), Gaps = 3/267 (1%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQS 95
           L+I  + M   L  +   S +++D +   +   K  D+P  PASLTK+MT Y+ ++ +  
Sbjct: 65  LAIPGVPMPPTLPQQA--SYVLMDADTGAVIAAKAPDQPWPPASLTKLMTAYLTYQAVAH 122

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
             L ++  +PVS +A     S++++      T +Q +  LI  S ND + A  + ++GS 
Sbjct: 123 GSLKMDQTVPVSVSAWHTGGSRMFISPGMTVTVDQLLHGLIIDSGNDAAVALAQAVAGSR 182

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             F  LM+++AK +G+++T Y N  GL + +  TTA D A L   + + +PQ+ K    +
Sbjct: 183 SGFVGLMNHEAKALGLKSTHYTNVDGLPNPDLRTTAMDVAKLSRDIVRTYPQFLKISVKK 242

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
            F +      + N +L     +DG+KTG T+ +G  I  +       ++AVV+G P+   
Sbjct: 243 HFTFDKIRQRSWNPVLFHDPTVDGLKTGRTKEAGHCIDATALRNGRRLIAVVLGGPSWTV 302

Query: 276 RDQKALELITSFLEKKTLKHQQTHRKD 302
                  L+    +           K 
Sbjct: 303 STHDIEALLDYGYQFYANAKVAVAGKP 329


>gi|332982023|ref|YP_004463464.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis
           50-1 BON]
 gi|332699701|gb|AEE96642.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis
           50-1 BON]
          Length = 394

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 84/283 (29%), Positives = 145/283 (51%), Gaps = 17/283 (6%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++++D    Q+   K   E    AS+TK+MT+ +I E L S ++     + VSK AA+ 
Sbjct: 52  SAVLMDAATGQLLYEKNAHEKLPIASITKIMTMDLIMEALDSGRIKPTDVVRVSKDAASL 111

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L+E    T ++ + A+   SAND + A  E+I+G+++ F  +M+ KAK +GM +
Sbjct: 112 GGSQIWLEEGEEMTVDEMMKAIAVNSANDAAAAMAEYIAGTQENFVKMMNEKAKSLGMND 171

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIITNHNKLL 231
           T + N  GL D N  ++A D A++   L K     +KY SI     R     + N NKL+
Sbjct: 172 TNFANVHGLDDDNHYSSAYDVALMSRELAK-HDGIFKYTSIWMDTLRDGETNLANTNKLI 230

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
                 DG+KTG T  + + I  + +  D  ++AV++G PTSQ R  +A +L+       
Sbjct: 231 RTY-GADGLKTGSTDKAKYCISATAKKDDMRLIAVILGGPTSQVRFDEAAKLLDYGFNTF 289

Query: 292 TLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
           T+               +KK  +I+ ++ T  +  +++  A  
Sbjct: 290 TINR------------IVKKGEIIRNIRVTRGKSDQVNGIAAD 320


>gi|121634652|ref|YP_974897.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria
           meningitidis FAM18]
 gi|120866358|emb|CAM10101.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria
           meningitidis FAM18]
          Length = 389

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 146/271 (53%), Gaps = 16/271 (5%)

Query: 35  LFLSIIMISMASELHAKPKYSS--------------IVIDVNKNQMTGFKQ-DEPRYPAS 79
           + L +   + AS    KP   +              IVID+   Q+   K  + P  PA+
Sbjct: 13  IILGVSHATAASPAPNKPAVHAAPTFQTPETLTAAHIVIDLQSKQILSAKNINTPVEPAA 72

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LT++MT Y++F+ ++S  +     + + ++A     S+++++     +T++ +  +I  S
Sbjct: 73  LTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALS 132

Query: 140 ANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           AND +      +  GS + F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A L 
Sbjct: 133 ANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLS 192

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             L ++FP+YY  FSI+ F+++N    N N LL + +N++G+K G+T + G+N+  S   
Sbjct: 193 EALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSG 252

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLE 289
               I+ + +G  +++ R     +L+   L+
Sbjct: 253 NGRHILVITLGSESAETRASDNSKLLNWALQ 283


>gi|229166858|ref|ZP_04294605.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH621]
 gi|228616486|gb|EEK73564.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH621]
          Length = 317

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 74/259 (28%), Positives = 139/259 (53%), Gaps = 16/259 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E+ AK   ++I+ID +  ++      +E   PAS++KMMT Y++ E + + K+H   
Sbjct: 59  IPPEIDAK---AAIIIDASNGEVIYQNNENEAVAPASMSKMMTAYLVLESIHNGKVHWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  +A    +K+ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM
Sbjct: 116 PVKISAKSAQTEGAKIPMQANDTLTVKDLYHALMIESANNSAVALAEHVAKTEKNFVQLM 175

Query: 163 SNKAKKIGMQN-TIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           + KAK++ M +   + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 176 NEKAKQLEMSDKAKFANASGLQEPDGSETKMTAADVAKLAYHLIKDYPEILEVTHLRQSQ 235

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  +T+ N++LNK         IDG+KTG+T ++G+    + +  D+ I+ VVMG 
Sbjct: 236 LAFNNVNVTSTNEMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGT 295

Query: 271 PTSQERDQKALELITSFLE 289
            +  +R  +  +L++   +
Sbjct: 296 KSKTKRFTETNKLMSYAFQ 314


>gi|309389989|gb|ADO77869.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halanaerobium praevalens
           DSM 2228]
          Length = 378

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 80/303 (26%), Positives = 150/303 (49%), Gaps = 11/303 (3%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           I L+   + L+I+  + A ++  +   S+ +I+    Q+   K  D    PAS+TK+M L
Sbjct: 9   ILLITIFMVLTILPTTFAFDIKPE---SAFLIEAETGQVLFEKNADRKLPPASMTKIMPL 65

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            I  E L+   + L  Q+ +S+ A +   S+++L   T    E+ I A+   S ND S A
Sbjct: 66  LITMEKLEEGSISLTDQVTISRYAESMGGSQIFLAANTQVELEKLIKAVTIASGNDASVA 125

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
            GE+I+G+   F  +M+ +A+++GM +T + N++GL   N  +TA D +I+   L K   
Sbjct: 126 IGEYIAGTYSNFIAMMNERAEELGMDSTNFSNSTGLPTTNHYSTAHDISIMARELVK-HS 184

Query: 207 QYYKYFSIRKFRY----RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           Q   + SI         R  ++ N N L+NK  ++DG+KTG+T+ +G+ +  + +  D  
Sbjct: 185 QVLHWASIWTETIDLPNRKAMLVNTNSLINKYPSMDGLKTGHTQEAGYCLTATAKKGDVR 244

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLKH--QQTHRKDNLSSTSLKKSLMIKKLKR 320
           +++VVM   T   R++    L+       + +       +  N+   +    + + ++  
Sbjct: 245 LISVVMQGETLTAREEATTRLLDYGFNSFSKRKIANSGEQIQNIEVANSANKVAVGEIAE 304

Query: 321 TYS 323
             S
Sbjct: 305 DLS 307


>gi|118443387|ref|YP_878099.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT]
 gi|118133843|gb|ABK60887.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT]
          Length = 392

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 85/321 (26%), Positives = 152/321 (47%), Gaps = 16/321 (4%)

Query: 28  IQLMGKILFLSIIMI-SMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMT 85
           + LM +I  ++++   + A ++ AK   + ++++    ++   K   E   PAS+TK+MT
Sbjct: 15  VTLMSQICVVNVMAAENTALDVEAK---AGLLMEPTTGKIIFEKNVHEKFAPASVTKIMT 71

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNP---SKLYLKEKTYFTTEQGILALITRSAND 142
           + +  E + S K+ L   + VS+ A        S + L      T E  +  +   S ND
Sbjct: 72  MLLTMEAVDSGKIKLTDTVVVSENAKKMGGNGSSSMLLDTGEVRTVEDLLKGVAIASGND 131

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            +TA  E+I GSE  F  +M+ +A+++GM++T +KN  GL  +  +T+A D +I+   L 
Sbjct: 132 AATALAEYIGGSESSFVEMMNKRAQELGMKDTTFKNCHGLSKEGHLTSAYDISIMSRELL 191

Query: 203 KNFPQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
           K   +  KY      +I + R +   + NHNKL+      DG+KTG+T  + + I  +  
Sbjct: 192 K-HKKILKYSGTYMETISEGRKQPIELVNHNKLVRFYKGCDGLKTGFTNEAKYCISATAV 250

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS--LMI 315
             +  ++A+++G PT + R++ A  L+     K   K       D    T  KK      
Sbjct: 251 RDNIRMLAIIVGAPTYKIRNRDASMLMNYGFSKFESKKVVAKDSDVEKITLDKKGEKFFF 310

Query: 316 KKLKRTYSQFKKIDAKAHSTQ 336
            K K   +   +   K   T+
Sbjct: 311 AKAKDDLNLVLERGTKNKITK 331


>gi|188586281|ref|YP_001917826.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350968|gb|ACB85238.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 395

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/323 (24%), Positives = 152/323 (47%), Gaps = 32/323 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP-----KYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           + R I L+  +LFL+I ++   S     P         ++ +    ++   +   E  YP
Sbjct: 1   MVRKISLV-LVLFLAISLVFQGSTAKTSPEDELEAPVYLLGEPKSGEILLEQDKQEQVYP 59

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+MTL +  E L+++++ L  ++ V + A     + ++L++    T +  I A+  
Sbjct: 60  ASITKIMTLLLTMEALENEQIALEEEVIVPREAEDIPGTTIFLQQGEKITVDDLITAIAV 119

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            SAND S A  + ISG+   F   M++KA+++GM+NT ++N  GLH    +TTA D  I+
Sbjct: 120 GSANDASIAIAKHISGTVDNFVDEMNDKARELGMKNTNFENPHGLHHDEHVTTAEDIFIM 179

Query: 198 GILLRKNFPQYYKYFSIR------------KFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
              L K + + + +  I             +       ++N N+L+N+    DG KTG+T
Sbjct: 180 ASELGK-YEEIHDWLEIWLIEDFLQGKKVVEDDEEGIFLSNTNRLVNQYPGCDGFKTGFT 238

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLS 305
             S  +I  + +   +  +A++M    S  R ++A+ L+                    +
Sbjct: 239 EESKHSITATAKQNGERYIAIIMSHEDSDGRFEEAMNLLDYGFANYQ------------T 286

Query: 306 STSLKKSLMIKKLKRTYSQFKKI 328
           +T L+K  ++ ++K      + +
Sbjct: 287 NTILEKGDLVARVKINKGDQEYL 309


>gi|306840479|ref|ZP_07473238.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO2]
 gi|306289494|gb|EFM60712.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO2]
          Length = 396

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 70/239 (29%), Positives = 124/239 (51%), Gaps = 6/239 (2%)

Query: 56  SIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +++ID     +   K  D+P  PASL K+MT  ++FE L+  +  L T  PVS+ A    
Sbjct: 42  ALLIDDRSGTVLLSKGADKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEYAWRTG 101

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S ++ + K+  T    +  +I +SAND +    E ++GSE+ FA  M+ +AK++
Sbjct: 102 GAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQRAKEL 161

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+ ++ + N++GL    Q+ T  D   L   +    P+YY+Y++   + + N    N N 
Sbjct: 162 GLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIHAAHPEYYRYYAQPAYTWNNITQRNRNP 221

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           LL      DG+ TG+T  SG+ +V S       +   + G+ + +ER+++A +LI   +
Sbjct: 222 LLRLEVGADGMGTGFTEASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLIQWGM 280


>gi|229011286|ref|ZP_04168478.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides DSM
           2048]
 gi|228749942|gb|EEL99775.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides DSM
           2048]
          Length = 317

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/259 (28%), Positives = 139/259 (53%), Gaps = 16/259 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E+ AK   ++I+ID +  ++      +E   PAS++KMMT Y++ E + + K+H   
Sbjct: 59  IPPEIDAK---AAIIIDASNGEVIYQNNENEAVAPASMSKMMTAYLVLESIHNGKVHWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  +A    +K+ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM
Sbjct: 116 PVKISAKSAQTEGAKIPMQANDTLTVKDLYHALMIESANNSAVALAEHVAKTEKNFVQLM 175

Query: 163 SNKAKKIGMQN-TIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           + KAK++ M +   + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 176 NEKAKQLEMSDKAKFANASGLQEPDGSETKMTAADVAKLAYHLIKDYPEILEVTHLRQSQ 235

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  +T+ N++LNK         IDG+KTG+T ++G+    + +  D+ I+ VVMG 
Sbjct: 236 LAFNNVNVTSTNEMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGT 295

Query: 271 PTSQERDQKALELITSFLE 289
            +  +R  +  +L++   +
Sbjct: 296 KSKTKRFTETNKLMSYAFQ 314


>gi|239827577|ref|YP_002950201.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70]
 gi|239807870|gb|ACS24935.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70]
          Length = 381

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/318 (25%), Positives = 140/318 (44%), Gaps = 25/318 (7%)

Query: 22  IYIQRNIQL-MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPAS 79
           + I++ I L +  ++ L   +   A  ++     S+I+++ N  ++   K     R  AS
Sbjct: 1   MKIRKQIALFIAAVMMLFSCIPDRAKAMNGVSAQSAILMEQNSGRILFEKDAHTKRRIAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MT+ +  E  +     ++  + VS  A     S +YLKE         +   + RS
Sbjct: 61  ITKIMTVILAIESGK-----MDDTVTVSARAVHTEGSSIYLKEGEKIKLRDLVYGTMLRS 115

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILG 198
            ND + A  E + GS + F  LM+ KA +IGM+NT + N  GL D +N  +TA D A+L 
Sbjct: 116 GNDAAVAIAEHVGGSVEGFVFLMNQKAAEIGMRNTHFANPHGLDDSENHYSTAYDMALLM 175

Query: 199 ILLRKNFPQYYKYFSIRKFRYR-------NRIITNHNKLLNK-MHNIDGIKTGYTRNSGF 250
               KN  ++ K      +R         +R+  N NKLL        G KTGYT+ +  
Sbjct: 176 QYAMKN-KEFRKISGTEVYRAPASPGEDWDRVWRNKNKLLTSLYEYCTGGKTGYTKRAKR 234

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL------EKKTLKH--QQTHRKD 302
            +VT+       +++V +  P          E             K+ +K      +RK+
Sbjct: 235 TLVTTASKGGMDLISVTLDAPDDWNDHIAMYEYGFGHYMIAKVNRKRMVKKIRDSFYRKN 294

Query: 303 NLSSTSLKKSLMIKKLKR 320
             +S  L+  +  +++K 
Sbjct: 295 IQASRDLRYPVTEEEIKE 312


>gi|188585838|ref|YP_001917383.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350525|gb|ACB84795.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 408

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 85/300 (28%), Positives = 129/300 (43%), Gaps = 15/300 (5%)

Query: 27  NIQLMGKILFLSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQDEP-RYPASLT 81
           NI ++  +LFL I+   ++  + A+       S I+I+    +       E    PASLT
Sbjct: 5   NIYIIIPLLFLMIVNPLLSPSVSAEEFDFDAESVILIEAETGRTIYENNAEKSWPPASLT 64

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MTL I  E L   +L L     VS  A     S+++L+E    T E  +  +   SAN
Sbjct: 65  KVMTLVIGLEALNEGELELEETTRVSAKANQTGGSQMFLRENQEVTIEDLLTGIAVVSAN 124

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D   A  E + GS   F   M+ KA++IG++NT +K+  GL    Q   ARD A L    
Sbjct: 125 DGCVALAEHMEGSVNNFVNRMNEKAEEIGLENTNFKDPHGLASDGQYMNARDVARLSQYA 184

Query: 202 RKNFPQYYKYFSIRKFRYR-NRIITNHNKLL--------NKMHNIDGIKTGYTRNSGFNI 252
               P+  +  SI  F++       N N +L              DG+KTG    +G+N 
Sbjct: 185 VNETPKILELESITGFQFNIESTQYNRNLMLPDHPQTTRYSYEGTDGLKTGQIEEAGYNF 244

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           V + +  D  ++AVV+G     ER     +L      +   K +     D L    +K  
Sbjct: 245 VGTAQRDDMRLIAVVLGAEEQTERFNITRQLFDHGFSEYQ-KIKLFDEGDELEQVDVKDG 303


>gi|218767989|ref|YP_002342501.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria
           meningitidis Z2491]
 gi|121051997|emb|CAM08306.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria
           meningitidis Z2491]
 gi|319410238|emb|CBY90578.1| D-alanyl-D-alanine carboxypeptidase (DD-peptidase;
           DD-carboxypeptidase; CPase; PBP5) [Neisseria
           meningitidis WUE 2594]
          Length = 389

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/274 (28%), Positives = 149/274 (54%), Gaps = 14/274 (5%)

Query: 30  LMGKILFLSIIMISMA----SELHAKPKY--------SSIVIDVNKNQMTGFKQ-DEPRY 76
           L+  IL +S    +         HA P +        + IVID+   Q+   K  + P  
Sbjct: 10  LLSIILGVSHATAASPAPNRPTAHAAPTFQTPETLTAAHIVIDLQSKQILSAKNINTPVE 69

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PA+LT++MT Y++F+ ++S  +     + + ++A     S+++++     +T++ +  +I
Sbjct: 70  PAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMI 129

Query: 137 TRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
             SAND +      +  GS + F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A
Sbjct: 130 ALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLA 189

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
            L   L ++FP+YY  FSI+ F+++N    N N LL + +N++G+K G+T + G+N+  S
Sbjct: 190 QLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVS 249

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
                  I+ + +G  +++ R     +L+   L+
Sbjct: 250 YSGNGRHILVITLGSESAETRASDNSKLLNWALQ 283


>gi|309379439|emb|CBX22006.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 388

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 146/297 (49%), Gaps = 4/297 (1%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
            + + +       + IVID+   Q    K  D P  PA+L ++MT Y++F+ L+S  +  
Sbjct: 33  AASSPQTPETLAAAHIVIDLQSRQTLSAKNIDAPVEPAALAQLMTAYLVFKNLKSGNIRP 92

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFA 159
              + + ++A     S+++++      T+  +  +I  SAND +      +  GS + F 
Sbjct: 93  EETLKIRESAWKSEGSRMFVRPGGSVRTDTLLKGMIVLSANDAALTLAGRLGNGSIENFV 152

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             M+ +A+ +GM+NT++KN +GL  + Q++TA+D A+L   L ++FP+YY  FSI+ F++
Sbjct: 153 KQMNEEARHLGMKNTVFKNPTGLSREGQVSTAKDLAMLSEALMRDFPEYYPLFSIKSFKF 212

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            N    N N LL +   ++G+K G+T + G+N+  S       I+ + +G  +++ R   
Sbjct: 213 ENIEQNNRNTLLYRDSGVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAEIRAAD 272

Query: 280 ALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
             +L+   L  ++    + H    + +         K ++  + +   I       +
Sbjct: 273 TSKLLNRAL--QSFDTPKIHSAGEIVTKIQVFGGSKKTVRAGFPKAAYITVPHDGVK 327


>gi|229003020|ref|ZP_04160878.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus mycoides Rock1-4]
 gi|228758220|gb|EEM07407.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus mycoides Rock1-4]
          Length = 444

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/355 (22%), Positives = 159/355 (44%), Gaps = 48/355 (13%)

Query: 20  GSIYIQRNIQLMGKI-LFLSIIMI--SMASELHAK---PKYSSIVIDVNKNQMTGFKQ-D 72
             ++ +R I ++  + LF S+ +   S ++E  A       ++I+++ +  ++   K  D
Sbjct: 7   KGMFCKRFIAMVTVLTLFCSMFVTYGSASAETGAALNVEAGAAILVEADSGKILYQKNAD 66

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTT 128
           E    AS+TKMM+ Y++ E +   KL  + ++ VS+ A      ++ S + L+    +T 
Sbjct: 67  ELLAIASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAHMISQDRSLSNVPLENGGSYTV 126

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------ 182
           ++   A+   SAN  + A  E I+G E  F  +M++KAK++G++N  + N++GL      
Sbjct: 127 KELYEAMAIYSANGATIALAEAIAGKEADFVKMMNDKAKELGLKNYKFVNSTGLTNHDLK 186

Query: 183 --------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----IITNHNK 229
                    D+    +ARD AIL   L ++FP+  +   I K  ++        + N N 
Sbjct: 187 GQQPEGTTPDEENKMSARDCAILAQHLIQDFPKVLETAKIPKKVFQEGGKYPVKMDNWNW 246

Query: 230 LLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +L         +DG+KTG T  +G     +       +++VV+   +   R  +  +L  
Sbjct: 247 MLKGLVKEYEGVDGLKTGSTPEAGDCFTGTAERNGMRLISVVIKTNSHTARFDETKKLFD 306

Query: 286 SFLEK----------KTLKHQQTHRKDNLSSTSL----KKSLMIKKLKRTYSQFK 326
                            +K  +T R +N     +    K+++ +  LK +   +K
Sbjct: 307 YGFTNFEVKKVYPKGSAVKGHETVRVENAKDKDVTIQTKQAIALPMLKGSKDAYK 361


>gi|153008237|ref|YP_001369452.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi
           ATCC 49188]
 gi|151560125|gb|ABS13623.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi
           ATCC 49188]
          Length = 371

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 89/285 (31%), Positives = 153/285 (53%), Gaps = 9/285 (3%)

Query: 56  SIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           SI +DV   ++   ++  +  YPASLTKMMT Y+ F  LQS ++ L++ + ++  AA + 
Sbjct: 28  SIAVDVATGKVYQQQEAFQRWYPASLTKMMTAYVAFRALQSGQMTLDSPVRMTVNAAKEP 87

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           PSK+  K  +  T +  +  ++ +SANDV+ A  E + G+E  F   M+ +A++IGM  +
Sbjct: 88  PSKMGYKPGSVMTLDTALKIMLVKSANDVAVAVAEAVGGTESGFVQRMNAEAQRIGMVGS 147

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLN 232
            + N +GLH+ N  TTARD A+L + LR+ FPQY  YF+          ++  N+N LL 
Sbjct: 148 HFANPNGLHNPNNYTTARDLAVLAVQLRREFPQYAHYFATEAIDPGAGKKVQANYNILLG 207

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK-- 290
           +    DG+KTG+   SGFN+ +S       ++A+V+G    + R  +A +L+T       
Sbjct: 208 RYDGADGMKTGFVCASGFNLASSATRNGRTVLAIVLGADRQEARAVQAAQLMTDAFRANA 267

Query: 291 ---KTLKHQQTHRKDNL-SSTSLKKSLMIKKLKRTYSQFKKIDAK 331
               TL   +     NL  +  ++K++  ++        + ++ K
Sbjct: 268 SGGATLATLRPAAGGNLNQAVDMRKAICSQQAMADRWDGRDVEGK 312


>gi|228995406|ref|ZP_04155077.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus mycoides Rock3-17]
 gi|228764332|gb|EEM13208.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus mycoides Rock3-17]
          Length = 444

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/355 (22%), Positives = 157/355 (44%), Gaps = 48/355 (13%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMI---SMASELHAK---PKYSSIVIDVNKNQMTGFKQ-D 72
             ++ +R I ++  +  L  + +   S ++E  A       ++I+++ +  ++   K  D
Sbjct: 7   KGMFCKRFIAMVTVLTLLCSMFVTYGSASAETGAALNVEAGAAILVEADSGKILYQKNAD 66

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTT 128
           E    AS+TKMM+ Y++ E +   KL  + ++ VS+ A      ++ S + L+    +T 
Sbjct: 67  ELLAIASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAHMISQDRSLSNVPLENGGSYTV 126

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------ 182
           ++   A+   SAN  + A  E I+G E  F  +M++KAK++G++N  + N++GL      
Sbjct: 127 KELYEAMAIYSANGATIALAEAIAGKEADFVKMMNDKAKELGLKNYKFVNSTGLTNHDLK 186

Query: 183 --------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----IITNHNK 229
                    D+    +ARD AIL   L ++FP+  +   I K  ++        + N N 
Sbjct: 187 GQQPEGTTPDEENKMSARDCAILAQHLIQDFPKVLETAKIPKKVFQEGGKYPVKMDNWNW 246

Query: 230 LLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +L         +DG+KTG T  +G     +       +++VV+   +   R  +  +L  
Sbjct: 247 MLKGLVKEYEGVDGLKTGSTPEAGDCFTGTAERNGMRLISVVIKTNSHTARFDETKKLFD 306

Query: 286 SFLEK----------KTLKHQQTHRKDNLSSTSL----KKSLMIKKLKRTYSQFK 326
                            +K  +T R +N     +    K+++ +  LK +   +K
Sbjct: 307 YGFTNFEVKKVYPKGSAVKGHETVRVENAKDKDVTIQTKQAIALPMLKGSKDAYK 361


>gi|168186263|ref|ZP_02620898.1| penicillin-binding protein DacF [Clostridium botulinum C str.
           Eklund]
 gi|169295681|gb|EDS77814.1| penicillin-binding protein DacF [Clostridium botulinum C str.
           Eklund]
          Length = 392

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 89/329 (27%), Positives = 153/329 (46%), Gaps = 19/329 (5%)

Query: 26  RNIQLMGKILFLSI-----IMISMASELHA--KPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           RN  L+   L +++     I+  MA++  A      + ++I+    ++   K   E   P
Sbjct: 4   RNKVLICLFLVVTLMSQFCIVNVMAADKTALDVEAKAGLLIEPTTGKVIFEKNVHEKFAP 63

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP---SKLYLKEKTYFTTEQGILA 134
           AS+TK+MT+ +  E + S K+ L+  + VS+ A        S + L      T E  +  
Sbjct: 64  ASVTKIMTMLLTMEAVDSGKIKLSDTVVVSENAKKMGGNGSSSMLLDTGEVRTVEDLLKG 123

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +   S ND +TA  E+I GSE  F  +M+ +A+++GM++T +KN  GL     +T+A D 
Sbjct: 124 VAIASGNDAATALAEYIGGSESSFVEMMNKRAQELGMKDTTFKNCHGLSADGHLTSAYDI 183

Query: 195 AILGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
           +I+   L K   +  KY      +I + R +   + NHNKL+      DG+KTG+T  + 
Sbjct: 184 SIMSRELLK-HKKILKYSGTYMETISEGRKQPIELVNHNKLVRFYKGCDGLKTGFTNEAK 242

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSL 309
           + I  +    +  ++A+++G PT + R++ A  L+     K   K   T   D    T  
Sbjct: 243 YCISATAVKNNIRMLAIIVGAPTYKIRNRDASMLMNYGFSKFESKKVVTKDTDVEKITLD 302

Query: 310 KKS--LMIKKLKRTYSQFKKIDAKAHSTQ 336
           KK       K K   +   +   K   T+
Sbjct: 303 KKGEKFFFAKAKDDLNLVLERGVKNKITK 331


>gi|92110365|emb|CAJ87634.1| putative penicillin binding protein 6b [Escherichia coli]
          Length = 335

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 60/218 (27%), Positives = 114/218 (52%), Gaps = 7/218 (3%)

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGILAL 135
           K+MT Y++   + S ++  +  + V + A  +        S ++LKE    +       L
Sbjct: 13  KLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGL 72

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I  S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++A D A
Sbjct: 73  IVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLA 132

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVT 254
           +L   +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +GFN++ 
Sbjct: 133 VLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIA 192

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           S       ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 193 SAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 230


>gi|62289915|ref|YP_221708.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str.
           9-941]
 gi|82699842|ref|YP_414416.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis biovar
           Abortus 2308]
 gi|189024158|ref|YP_001934926.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus
           S19]
 gi|237815417|ref|ZP_04594415.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A]
 gi|254697357|ref|ZP_05159185.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260545336|ref|ZP_05821077.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038]
 gi|260761773|ref|ZP_05874116.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|62196047|gb|AAX74347.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str.
           9-941]
 gi|82615943|emb|CAJ10966.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella
           melitensis biovar Abortus 2308]
 gi|189019730|gb|ACD72452.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus
           S19]
 gi|237790254|gb|EEP64464.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A]
 gi|260096743|gb|EEW80618.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038]
 gi|260672205|gb|EEX59026.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2
           str. 86/8/59]
          Length = 396

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 122/239 (51%), Gaps = 6/239 (2%)

Query: 56  SIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +++ID     +   K  D+P  PASL K+MT  ++FE L+  +  L T  PVS+ A    
Sbjct: 42  ALLIDDRSGTVLLSKGADKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEYAWRTG 101

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S ++ + K+  T    +  +I +SAND +    E ++GSE+ F   M+ +AK++
Sbjct: 102 GAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFTGAMNQRAKEL 161

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+ ++ + N++GL    Q+ T  D   L   +    P+YY+Y+    + + N    N N 
Sbjct: 162 GLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIHAAHPEYYRYYEQPAYTWNNITQRNRNP 221

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           LL      DG+ TG+T  SG+ +V S       +   + G+ + +ER+++A +LI   +
Sbjct: 222 LLRLEVGADGMGTGFTEASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLIQWGM 280


>gi|260881011|ref|ZP_05403380.2| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM
           20544]
 gi|260850172|gb|EEX70179.1| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM
           20544]
          Length = 412

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 141/304 (46%), Gaps = 26/304 (8%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           ++IS    L      S++VID    Q+   +  DE R+PAS TK+MTL +  E+      
Sbjct: 58  LVISPDDPLQNLTARSAVVIDAASGQVIYERNKDERRFPASTTKIMTLILALEHS----- 112

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
           +++  + VS  AA    S L+L+          +  ++  S ND + A  E I+GS  KF
Sbjct: 113 NMDDMVTVSSNAAGTEGSTLWLEAGEKIRMGDLLYGMMMHSGNDATVAVAEHIAGSVDKF 172

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           A +M+ KA +IG  NT + NA+GL  ++  TTA D A +     +  P + +  S ++  
Sbjct: 173 AAMMTAKAHEIGAVNTNFANANGLPREDHYTTAYDLAKITAYGYR-VPGFEQIVSTKEID 231

Query: 219 Y-----RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           +      +  + N N++L      +G+KTGYT  +G  +V+  +     +VAVV+    S
Sbjct: 232 FDWVKDPSHHLRNENQMLWLYRGANGVKTGYTDAAGRCLVSGAKKDGLQLVAVVL---DS 288

Query: 274 QERDQKALELITSFL----EKKTLKHQQTHRKDNLSSTSLKK-------SLMIKKLKRTY 322
                 +++L+            +K   T    N++  + +K       +L + KLK   
Sbjct: 289 VYMWNDSIKLLDYGFAHVEPDTIVKEGDTVGYANVAGGTGRKLPLKAAETLTLAKLKGEG 348

Query: 323 SQFK 326
             +K
Sbjct: 349 EAYK 352


>gi|307825263|ref|ZP_07655483.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylobacter
           tundripaludum SV96]
 gi|307733719|gb|EFO04576.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylobacter
           tundripaludum SV96]
          Length = 395

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 95/260 (36%), Positives = 151/260 (58%), Gaps = 2/260 (0%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEY 92
           +L L+ + +   SE+    ++++I+ID +   +    +  +  YPASLTK+MTLY+ F+ 
Sbjct: 8   LLILNAVWLFAVSEVS-YGRHAAIIIDADNGNVLHEVEATQSWYPASLTKLMTLYMTFDA 66

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           L++ ++HL+  +  S  A+ Q  SKL L+   + T E  ILA+ITRSAND S    E + 
Sbjct: 67  LKAGQIHLHDTLTASTRASQQPNSKLGLRRGEHLTVEDAILAIITRSANDASVVLAEHLG 126

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
            +E+ FA+ M+ KA  +GM NT + NA+GL +  Q+TT RD A+L    ++NFP+YY YF
Sbjct: 127 DTEENFAVNMTEKADSLGMYNTHFMNATGLPNNWQVTTPRDMAVLAWKAQRNFPEYYHYF 186

Query: 213 SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           S   F Y+   +   NK        +G+KTG+T  SGFN++ +       ++ VVMG  T
Sbjct: 187 SAHSFNYKGTELRGINKFTASYPGAEGMKTGFTCGSGFNLIGAAHQNGKHLIGVVMGGMT 246

Query: 273 SQERDQKALELITSFLEKKT 292
           S+ER Q  ++ + +     T
Sbjct: 247 SKERYQLMMQKMDASFANLT 266


>gi|325135913|gb|EGC58523.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
           M0579]
          Length = 389

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/271 (28%), Positives = 150/271 (55%), Gaps = 16/271 (5%)

Query: 35  LFLSIIMISMASELHAKP-KYSS-------------IVIDVNKNQMTGFKQ-DEPRYPAS 79
           + L I   + AS +  +P  +++             IVID+   Q+   K  + P  PA+
Sbjct: 13  IILGISHATAASPVPNRPTAHAAPTLQTPETLTAAHIVIDLQSKQILSAKNINTPVEPAA 72

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LT++MT Y++F+ ++S  +     + + ++A     S+++++     +T++ +  +I  S
Sbjct: 73  LTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALS 132

Query: 140 ANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           AND +      +  GS + F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A L 
Sbjct: 133 ANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLS 192

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             L ++FP+YY  FSI+ F+++N    N N LL + +N++G+K G+T + G+N+  S   
Sbjct: 193 EALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSG 252

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLE 289
               I+A+ +G  +++ R     +L+   L+
Sbjct: 253 NGRHILAITLGSESAETRASDNSKLLNWALQ 283


>gi|326405324|ref|YP_004285406.1| putative peptidase S11 [Acidiphilium multivorum AIU301]
 gi|325052186|dbj|BAJ82524.1| putative peptidase S11 [Acidiphilium multivorum AIU301]
          Length = 453

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 86/254 (33%), Positives = 136/254 (53%), Gaps = 2/254 (0%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLH 99
           + S A+     P    IV+D    ++         R+PASLTK+MTL + F  L   +L+
Sbjct: 57  IASPAASGPLAPGIDWIVMDAATGRILSEHNAYNERFPASLTKLMTLDLAFHALSHGRLN 116

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG-SEKKF 158
            NT +PVS  AA+  P KL L      T  Q +L + T SAND +TA G+++ G S ++ 
Sbjct: 117 ANTPLPVSPAAASVQPVKLNLVAGQTVTVMQAMLGMTTLSANDAATALGQYLGGGSIRRV 176

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           A  M+ +A  +GM+ + ++N SGL + NQ+T A D AIL   L  ++PQY   FS+  FR
Sbjct: 177 AAEMTARAHALGMERSEFRNPSGLPNPNQVTDAYDMAILARHLLLDYPQYRYLFSVPSFR 236

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +  R I N + +L + +   G+KTGYT  + FN+VT+       ++ V M  P+      
Sbjct: 237 FEGRTIPNIDGMLKRYNGAIGMKTGYTDLARFNLVTAAVRNGHMLIGVEMHAPSWIVAYN 296

Query: 279 KALELITSFLEKKT 292
           +  +L+ +    ++
Sbjct: 297 RMTQLLDAGFAAES 310


>gi|148261820|ref|YP_001235947.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidiphilium cryptum
           JF-5]
 gi|146403501|gb|ABQ32028.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidiphilium cryptum
           JF-5]
          Length = 453

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 86/254 (33%), Positives = 136/254 (53%), Gaps = 2/254 (0%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLH 99
           + S A+     P    IV+D    ++         R+PASLTK+MTL + F  L   +L+
Sbjct: 57  IASPAASGPLAPGIDWIVMDAATGRILSEHNAYNERFPASLTKLMTLDLAFHALSHGRLN 116

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG-SEKKF 158
            NT +PVS  AA+  P KL L      T  Q +L + T SAND +TA G+++ G S ++ 
Sbjct: 117 ANTPLPVSPAAASVQPVKLNLVAGQTVTVMQAMLGMTTLSANDAATALGQYLGGGSIRRV 176

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           A  M+ +A  +GM+ + ++N SGL + NQ+T A D AIL   L  ++PQY   FS+  FR
Sbjct: 177 AAEMTARAHALGMERSEFRNPSGLPNPNQVTDAYDMAILARHLLLDYPQYRYLFSVPSFR 236

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +  R I N + +L + +   G+KTGYT  + FN+VT+       ++ V M  P+      
Sbjct: 237 FEGRTIPNIDGMLKRYNGAIGMKTGYTDLARFNLVTAAVRNGHMLIGVEMHAPSWIVAYN 296

Query: 279 KALELITSFLEKKT 292
           +  +L+ +    ++
Sbjct: 297 RMTQLLDAGFAAES 310


>gi|325130023|gb|EGC52816.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
           OX99.30304]
          Length = 389

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/254 (28%), Positives = 143/254 (56%), Gaps = 4/254 (1%)

Query: 40  IMISMASELHAKPKYSS--IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSK 96
           + +  A  L      ++  IVID+   Q+   K  + P  PA+LT++MT Y++F+ ++S 
Sbjct: 30  LTVHAAPTLQTPETLTAAHIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSG 89

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSE 155
            +     + + ++A     S+++++     +T++ +  +I  SAND +      +  GS 
Sbjct: 90  NIRSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSI 149

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           + F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A L   L ++FP+YY  FSI+
Sbjct: 150 ENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIK 209

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
            F+++N    N N LL + +N++G+K G+T + G+N+  S       I+ + +G  +++ 
Sbjct: 210 SFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAET 269

Query: 276 RDQKALELITSFLE 289
           R     +L+   L+
Sbjct: 270 RASDNSKLLNWALQ 283


>gi|329923410|ref|ZP_08278892.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5]
 gi|328941302|gb|EGG37596.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5]
          Length = 336

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/284 (27%), Positives = 134/284 (47%), Gaps = 24/284 (8%)

Query: 31  MGKILFLSIIM-ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYI 88
            G IL    I  + +   + A    S+I+I  +  ++      D P  PAS++KMMT  +
Sbjct: 46  FGVILIGVFIARVFIPPPIKA---SSAILIHADTGRVLYAMHADLPLPPASMSKMMTELL 102

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           + E ++S +   +  +PVS+ AA    S + + E   +T +Q   ALI  SAND + A  
Sbjct: 103 VLEAVRSGQHAWDENVPVSRYAAEVPGSAIGMHEGERYTLKQLFEALIIHSANDAAVAIA 162

Query: 149 EFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDK------------NQITTARDQA 195
           E + GSE +F   M+ +AK+IG+ + T++ NASGL               + + TARD A
Sbjct: 163 EHLGGSEARFVESMNIRAKEIGLSDRTVFANASGLPAADLVPFAEAASEGDTVMTARDSA 222

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNR--IITNHNKLLNK----MHNIDGIKTGYTRNSG 249
           +L   L    P   +  S R      +   +   N +L          DG KTGYT ++G
Sbjct: 223 MLARWLVNKHPDLLEVTSQRDLPVPQKELSLHTTNLMLPGEPHAYQGNDGFKTGYTSSAG 282

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
           +    +     + +++VVMG   + +R  +  +L+    +++ +
Sbjct: 283 YCFTGTASRGGNRLISVVMGTGDADQRFTETRKLMDYGFDRQGI 326


>gi|229083326|ref|ZP_04215686.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-44]
 gi|228699973|gb|EEL52598.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-44]
          Length = 449

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/366 (20%), Positives = 159/366 (43%), Gaps = 48/366 (13%)

Query: 9   SAKKTFLTYPYGSIYIQRNIQLMGKI-LFLSIIMISMASELHAKPKY-----SSIVIDVN 62
            + K         ++ +R I ++  + LF S+ +   ++     P       ++I+++ +
Sbjct: 1   MSTKKLGVKEVKGMFCKRFIAMVTVLTLFCSMFVTYSSASAETGPALDVAAGAAILVEAD 60

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSK 117
             ++   K  DE    AS+TKMM+ Y++ + +   KL  + ++ VS+ A      ++ S 
Sbjct: 61  SGKILYQKNADELLAIASMTKMMSEYLVHKAVDQGKLKWDQKVKVSEYAYKVSQDRSLSN 120

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           + L+    +T ++   A+   SAN  + A  E ++G E  F  +M+++AK+ G++N  + 
Sbjct: 121 VPLENGGSYTVKELYEAMAIYSANGATIALAEAVAGKEADFVKMMNDQAKEFGLKNYKFV 180

Query: 178 NASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           N++GL               D+    +ARD AIL   L ++FP       I K  ++   
Sbjct: 181 NSTGLTNTDLKGLHPEGTTPDEENKMSARDVAILAQRLMQDFPNVLDTAKIPKKVFQKDG 240

Query: 222 ---RIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L     +   +DG+KTG+T  +G+    +       +++VV+   ++ 
Sbjct: 241 KYPIQMDNWNWMLKGLVKQYEGVDGLKTGHTPEAGYCFTGTAEKNGMRLISVVINTSSNT 300

Query: 275 ERDQKALELITSFLEK----------KTLKHQQTHRKDNLSSTSL----KKSLMIKKLKR 320
            R  +  ++                   +K  +T R +N     +    K+++ +   K 
Sbjct: 301 SRFDETKKIFDYGFANFDVKKVYSKGSAVKGHETVRVENAKDKDVTVQTKQAITLPMPKG 360

Query: 321 TYSQFK 326
           +   +K
Sbjct: 361 SKDVYK 366


>gi|261410081|ref|YP_003246322.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           sp. Y412MC10]
 gi|261286544|gb|ACX68515.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           sp. Y412MC10]
          Length = 323

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 136/293 (46%), Gaps = 27/293 (9%)

Query: 25  QRNIQLMGKILFL---SIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYP 77
           +R + L+  +L +     ++I        KPK  +   +++D+N  ++   +  D P  P
Sbjct: 3   KRWLWLVMMLLIIVPIGAVVIGNIERAGFKPKVDARAVVLMDLNTGRILLSENGDVPLPP 62

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS++K+MT  +I + +++ K   + ++ +S TA+     K+ LK     T  +   ++  
Sbjct: 63  ASMSKLMTELVILDDIKTGKRSWDDEVKISDTASDVRGVKIALKSGEILTVRELFQSITV 122

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASG-----------LHDK 185
            SAND S A  E  +GSE+ F   M+ KAK+IG+ + T + NASG             D 
Sbjct: 123 YSANDASVALAEHFAGSEEAFVRKMNAKAKEIGLSSATRFVNASGVEQGTANGHAWSSDG 182

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFS--IRKFRYRNRIITNHNKLL------NKMHNI 237
             + TA D A L   L ++ P      S    K   RN  ++N N +L            
Sbjct: 183 ETVMTAEDTAKLAAHLIRSHPDILSTSSKTQTKISGRNLYLSNTNWMLPSLGGPYSYEGT 242

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           DG+K GYT N+G+    +   +   ++AVVMG  + + R ++  +L      K
Sbjct: 243 DGLKAGYTANAGYCFTGTAEKQGSRLIAVVMGTESKEARFEETRKLFDYGFSK 295


>gi|56697577|ref|YP_167946.1| D-alanyl-D-alanine carboxypeptidase [Ruegeria pomeroyi DSS-3]
 gi|56679314|gb|AAV95980.1| D-alanyl-D-alanine carboxypeptidase [Ruegeria pomeroyi DSS-3]
          Length = 388

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 134/267 (50%), Gaps = 6/267 (2%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
             +   +L L + + ++    +     ++ V+D +   +   K  DE   PAS++K+MTL
Sbjct: 3   FTIRSALLALGMALTALPGFAYDTSARAAYVLDQSTGTVLLTKNADEALPPASMSKLMTL 62

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y+ FE L+  +L L+ ++PVS+ A +   S ++L        E  +  +I  S ND    
Sbjct: 63  YVTFEALRDGRLTLDERLPVSQHAMSYGGSTMFLNTTDRVRVEDLLRGIIVLSGNDACAV 122

Query: 147 FGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
             E +S  G+E  FA  M+ +A+++GM  + + N++G      + +  D A+L   L  +
Sbjct: 123 IAEALSPDGTEAGFARFMTKRAQQMGMTRSTFANSNGWPAAGHLMSVHDLAVLANRLITD 182

Query: 205 FPQYYKYFSIRKFRYRNR---IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           FP+YY  F+  +F +  R    + N N LL      DG+KTG+T  +G+ +V S R  D 
Sbjct: 183 FPEYYPLFAETEFAFDGRAPSNVRNRNPLLKLDIGADGLKTGHTAEAGYGLVGSARQGDR 242

Query: 262 PIVAVVMGMPTSQERDQKALELITSFL 288
            ++ V+ G+ +   R ++A  ++    
Sbjct: 243 RVIFVLTGLESEARRAEEAEAIVNWSF 269


>gi|261409755|ref|YP_003245996.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           sp. Y412MC10]
 gi|261286218|gb|ACX68189.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           sp. Y412MC10]
          Length = 336

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 77/284 (27%), Positives = 134/284 (47%), Gaps = 24/284 (8%)

Query: 31  MGKILFLSIIM-ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYI 88
            G IL    I  + +   + A    S+I+I  +  ++      D P  PAS++KMMT  +
Sbjct: 46  FGVILIAVFIARVFIPPPIKA---SSAILIHADTGRVLYAMHADLPLPPASMSKMMTELL 102

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           + + ++S +   +  +PVS+ AA    S + + E   +T +Q   ALI  SAND + A  
Sbjct: 103 VLDAVRSGQHAWDENVPVSRYAAEVPGSAIGMHEGERYTLKQLFEALIIHSANDAAVAIA 162

Query: 149 EFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDK------------NQITTARDQA 195
           E + GSE +F   M+ +AK+IG+ + T++ NASGL               + + TARD A
Sbjct: 163 EHLGGSEARFVETMNARAKEIGLSDRTVFANASGLPAADLVPFAEAASEGDTVMTARDSA 222

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNR--IITNHNKLLNK----MHNIDGIKTGYTRNSG 249
           +L   L    P   +  S R      +   +   N +L          DG KTGYT ++G
Sbjct: 223 MLARWLVNKHPDLLEVTSQRDLPVPQKELSLHTTNLMLPGEPHAYQGNDGFKTGYTASAG 282

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
           +    +     + +++VVMG   + +R  +  +L+    +++ +
Sbjct: 283 YCFTGTASRGGNRLISVVMGTGDADQRFTETRKLMDYGFDRQGI 326


>gi|152975284|ref|YP_001374801.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024036|gb|ABS21806.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH
           391-98]
          Length = 339

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 71/251 (28%), Positives = 132/251 (52%), Gaps = 13/251 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++I+ID +  ++      +E   PAS++KMMT Y++ E +   K+H   Q+ +S  +A
Sbjct: 74  AKAAIIIDASDGEVIYQNNENETFAPASMSKMMTAYLLLENIHKGKVHWEDQVKISAKSA 133

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +K+ L+     T +    AL+ +SAN+ + A  E ++ +EK F  +M+ KAK + +
Sbjct: 134 QTEGAKIPLQMNDVVTVKDLFHALMIQSANNAAVALAEHMAKTEKNFVQIMNQKAKDLEL 193

Query: 172 QN-TIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIIT 225
            N T + NASGL + +       A D A L   L K +P+  +   +R  +  ++N  +T
Sbjct: 194 SNKTKFANASGLQEPDGSETKMPAADVAKLAYHLIKEYPEILEVTHLRRSQLAFKNISVT 253

Query: 226 NHNKLLN------KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           + N++LN       +  +DG+KTG+T ++G+    + +  D  I+ VVMG  +  +R  +
Sbjct: 254 STNEMLNTANKNLHIEGMDGLKTGFTDSAGYCFTGTAKQGDKRIITVVMGTKSQTKRFTE 313

Query: 280 ALELITSFLEK 290
             +L++   E 
Sbjct: 314 THKLMSYGFEF 324


>gi|146277284|ref|YP_001167443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145555525|gb|ABP70138.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 389

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/271 (29%), Positives = 140/271 (51%), Gaps = 16/271 (5%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKL 98
            + ++A +  A+  +   V DV    +   K   EP  PAS++K+MTL ++FE L+  ++
Sbjct: 17  ALPALAFDTRARAAW---VYDVTTRTVLLDKNAHEPLPPASMSKLMTLNMLFEALRDGRV 73

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            +NT   VS  A     SK++++E+   T E  I  ++  S ND      E ++G+E  F
Sbjct: 74  TMNTTFAVSTKAKQMGGSKMFVEERDRPTVEDLIHGIVVNSGNDACVVVAEGLNGTESDF 133

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           +  M+ +AK +GM ++ + N+SG  +     +  D  IL + L + FP+YY YF+  +F 
Sbjct: 134 SRAMNVRAKALGMNDSTFTNSSGWPEPGHRMSVHDLGILAVRLIEEFPEYYPYFAHTEFN 193

Query: 219 YRNRII---TNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSL-RYKDDPIVAVVMGM 270
           Y++R+     N N LL          DG+KTG+T+ +G+ +V S  +     IV V+ G+
Sbjct: 194 YKDRVPSNANNRNPLLRLGPDGDWTADGLKTGHTQEAGYGLVGSAVQKDGRRIVFVLTGL 253

Query: 271 PTSQERDQKALELITSFL----EKKTLKHQQ 297
            T  +R Q+  +++        +K  +K  Q
Sbjct: 254 ATEADRAQEGEQIVNWAFRQFVQKTLVKKGQ 284


>gi|313668657|ref|YP_004048941.1| D-alanyl-D-alanine carboxypeptidase [Neisseria lactamica ST-640]
 gi|313006119|emb|CBN87580.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria lactamica
           020-06]
          Length = 388

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 71/250 (28%), Positives = 137/250 (54%), Gaps = 2/250 (0%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
            + + +       + IVID+   Q    K  D P  PA+L ++MT Y++F+ L+S  +  
Sbjct: 33  AASSPQTPETLAAAHIVIDLQSRQTLSAKNIDAPVEPAALAQLMTAYLVFKNLKSGNIRP 92

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFA 159
              + + ++A     S+++++      T+  +  +I  SAND +      +  GS + F 
Sbjct: 93  EETLKIRESAWKSEGSRMFVRPGGSVRTDTLLKGMIVLSANDAALTLAGRLGNGSIENFV 152

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             M+ +A+++GM+NT+++N +GL  + Q++TARD A+L   L ++FP+YY  FSI+ F++
Sbjct: 153 KQMNEEARRLGMKNTLFRNPTGLSQERQVSTARDLALLAEALMRDFPEYYPLFSIKSFKF 212

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            N    N N LL + +N++G+K G+T + G+N+  S       I+ + +G  +++ R   
Sbjct: 213 ENIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASD 272

Query: 280 ALELITSFLE 289
             +L+   L+
Sbjct: 273 NSKLLNRALQ 282


>gi|89053769|ref|YP_509220.1| Serine-type D-Ala-D-Ala carboxypeptidase [Jannaschia sp. CCS1]
 gi|88863318|gb|ABD54195.1| Serine-type D-Ala-D-Ala carboxypeptidase [Jannaschia sp. CCS1]
          Length = 398

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 85/280 (30%), Positives = 144/280 (51%), Gaps = 7/280 (2%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPAS 79
           +   +    L+    F    +++ A     + + ++ V D    Q+      DE   PAS
Sbjct: 4   ATLTKPVATLLAAGCFFVSSLMANAQGYETQAR-AAYVYDHASGQVLLALNADEALPPAS 62

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           ++K+MTL + FE L+  +L L T++PVS+ A +   S ++L  +   T E+ I  ++  S
Sbjct: 63  MSKLMTLLMAFEALRDGRLTLETRVPVSEHAMSFGGSTMFLNTQDRPTIEELIRGVVIVS 122

Query: 140 ANDVSTAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            ND S   GE +S  G+E+ FA +M+ +A+++GM N+ ++NASG        + RD  IL
Sbjct: 123 GNDASVVLGEALSPDGTEEGFATMMTQRAQQLGMMNSTFRNASGWPADGHAMSMRDLGIL 182

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRII---TNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
              L + FP+YY YF   +F Y +R      N N LL      DG+KTG+T+ +GF +V 
Sbjct: 183 AQRLIEEFPEYYGYFVETEFDYEDRSPANRFNRNPLLGLGIGADGLKTGHTQEAGFGLVG 242

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
           S    D  +  V+ G+ ++  R  +A  L+T    +  ++
Sbjct: 243 SAMQGDRRVTFVITGLDSADARAAEAERLVTWAFRQFVMR 282


>gi|13470655|ref|NP_102224.1| penicillin binding protein [Mesorhizobium loti MAFF303099]
 gi|14021397|dbj|BAB48010.1| penicillin binding protein [Mesorhizobium loti MAFF303099]
          Length = 388

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 140/289 (48%), Gaps = 10/289 (3%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + +ID +   +   K  D+P  PAS+ K+MT+ ++F  ++S +L L+    VS+ A  + 
Sbjct: 37  AFMIDADTGTVLFSKDADKPIPPASMAKLMTMEVVFNAIKSGRLKLDDTFVVSENAWRKG 96

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S ++ K K+    E  I  +  ++AND      E ++GSE  FA  M+ +A++I
Sbjct: 97  GAPSGTSTMFAKLKSAIRLEDLIQGVTVQAANDGCIVIAEGMAGSEDNFAAQMTERARQI 156

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G++ + + N++GL    Q TT R+ A L + L +++P +Y+Y+ ++ F +      N N 
Sbjct: 157 GLKTSTFVNSTGLPADGQQTTVRELAQLALHLWRDYPDFYRYYGLKDFTWNKISQKNRNP 216

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF-- 287
           LL      DG+  G +  +GF IV S+ +    ++  + G+   +ER ++A +L+     
Sbjct: 217 LLAMDIGADGLAVGASEVAGFGIVASVSHNGTRVIMAMNGLANDKERAEEARKLLDWGAR 276

Query: 288 -LEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
             EK  +  +     +       K  + + K K     F  I  +   T
Sbjct: 277 SFEKTEIFAKDEVVGEAQVFGGAKSGVTL-KAKGPIDIFLPITNRDKLT 324


>gi|329925045|ref|ZP_08279989.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5]
 gi|328940164|gb|EGG36496.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5]
          Length = 323

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 136/293 (46%), Gaps = 27/293 (9%)

Query: 25  QRNIQLMGKILFL---SIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYP 77
           +R + L+  +L +     ++I        KPK  +   +++D+N  ++   +  D P  P
Sbjct: 3   KRWLWLVMMLLIIVPIGAVVIGNIERAGFKPKVDARAVVLMDLNTGRILLSENGDLPLPP 62

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS++K+MT  +I + +++ K   + ++ +S TA+     K+ LK     T  +   ++  
Sbjct: 63  ASMSKLMTELVILDDIKTGKRSWDDEVKISDTASDVRGVKIALKSGEILTVRELFQSITV 122

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASG-----------LHDK 185
            SAND S A  E  +GSE+ F   M+ KAK+IG+ + T + NASG             D 
Sbjct: 123 YSANDASVALAEHFAGSEEAFVRKMNAKAKEIGLSSATRFVNASGVEQGTANGHAWSSDG 182

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFS--IRKFRYRNRIITNHNKLL------NKMHNI 237
             + TA D A L   L ++ P      S    K   RN  ++N N +L            
Sbjct: 183 ETVMTAEDTAKLAAHLIRSHPDILSTSSKTQTKISGRNLYLSNTNWMLPSLGGPYSYEGT 242

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           DG+K GYT N+G+    +   +   ++AVVMG  + + R ++  +L      K
Sbjct: 243 DGLKAGYTANAGYCFTGTAEKQGSRLIAVVMGTESKEARFEETRKLFDYGFSK 295


>gi|23099281|ref|NP_692747.1| D-alanyl-D-alanine carboxypeptidase [Oceanobacillus iheyensis
           HTE831]
 gi|22777510|dbj|BAC13782.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
           [Oceanobacillus iheyensis HTE831]
          Length = 367

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/273 (29%), Positives = 125/273 (45%), Gaps = 12/273 (4%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           L   ILF+S    S    L +    ++++I+ +  ++   K  +E    AS+TK+MT  I
Sbjct: 9   LTSLILFMSFP--SYGQALPSVSANNAVLIEQSTGRVLFEKNANEEASIASITKIMTAII 66

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
             E        L+ Q+  S+ A     S +YL++      +  +  L+ RS ND + A  
Sbjct: 67  AIESGM-----LDEQVTTSRKAIYTEGSSIYLEQGEEIPLKDLVYGLMLRSGNDAAVAIA 121

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           E + GSE+ F  LM+ KAK +GM+NT + N  GL      ++A D AIL      N P +
Sbjct: 122 EHVGGSEEGFVYLMNEKAKWLGMENTHFDNPHGLDSDTHYSSAYDMAILMKYAMDN-PMF 180

Query: 209 YKYFSIRKFRYRNRI--ITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            +      +   NR     N NKLL +      G KTGYT+ +G  +VTS       ++A
Sbjct: 181 REVSQSDSYLSNNRTYHWQNKNKLLTRLYEYCTGGKTGYTKATGRTLVTSAHKNGMDLIA 240

Query: 266 VVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
           V +  P   +      E      E KT++ + T
Sbjct: 241 VTLDAPDDWQDHIGMFEWGFEQFEMKTVQEEGT 273


>gi|56963593|ref|YP_175324.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16]
 gi|56909836|dbj|BAD64363.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16]
          Length = 380

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/275 (26%), Positives = 130/275 (47%), Gaps = 16/275 (5%)

Query: 27  NIQLMGKILFL-SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMM 84
           +  L+G + F  S  +++           ++I+++ +  ++   K +  P   AS+TK+M
Sbjct: 7   HCLLVGFLFFFQSSEVLANEPATFPVSGQAAILMEQSSGRVLYSKNEHQPLKIASITKIM 66

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T  +  E  +     L+  + VSK A     S LYL      T    +  L+ RS ND +
Sbjct: 67  TAILAIESGK-----LDETVTVSKRAEGTEGSSLYLVAGEKLTLRDLVYGLMLRSGNDAA 121

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRK 203
            A  E + GS + F  LM+ KA++IGM NT+++N  GL  D++ +++A D A+L      
Sbjct: 122 IAIAEHVGGSVEGFVFLMNEKAEEIGMSNTLFRNPHGLDTDEDHLSSAYDMALLTQYAMG 181

Query: 204 NFPQYYKYFSIRKFRYRN---RIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           N  +Y    S + +R +    R+  N N+LL  K     G KTGYT+ +   +V++    
Sbjct: 182 N-EEYRDISSTKDYRSKGDKVRVFHNKNRLLTEKYSYSTGGKTGYTKLAKRTLVSTASKD 240

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
              ++AV +  P   +     + +     E  +L+
Sbjct: 241 GLDLIAVTLNAPDDWD---DHMHMFNWGFEHYSLE 272


>gi|254670388|emb|CBA05903.1| putative penicillin-binding protein precursor [Neisseria
           meningitidis alpha153]
          Length = 389

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 148/271 (54%), Gaps = 16/271 (5%)

Query: 35  LFLSIIMISMASELHAKP-KYSS-------------IVIDVNKNQMTGFKQ-DEPRYPAS 79
           + L I   + AS +  +P  +++             IVID+   Q+   K  + P  PA+
Sbjct: 13  IILGISHATAASPVPNRPTAHAAPTLQTPETLTAAHIVIDLQSKQILSAKNINTPVEPAA 72

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LT++MT Y++F+ ++S  +     + + ++A     S+++++      T++ +  +I  S
Sbjct: 73  LTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASEGSRMFVRPGDTVGTDKLLKGMIALS 132

Query: 140 ANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           AND +      +  GS + F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A L 
Sbjct: 133 ANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLS 192

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             L ++FP+YY  FSI+ F+++N    N N LL + +N++G+K G+T + G+N+  S   
Sbjct: 193 EALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSG 252

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLE 289
               I+ + +G  +++ R     +L+   L+
Sbjct: 253 NGRHILVITLGSESAEIRASDNSKLLNWALQ 283


>gi|138893689|ref|YP_001124142.1| D-alanine carboxypeptidase [Geobacillus thermodenitrificans NG80-2]
 gi|196251175|ref|ZP_03149851.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16]
 gi|134265202|gb|ABO65397.1| D-alanine carboxypeptidase [Geobacillus thermodenitrificans NG80-2]
 gi|196209316|gb|EDY04099.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16]
          Length = 452

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 77/339 (22%), Positives = 146/339 (43%), Gaps = 43/339 (12%)

Query: 28  IQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           + L+   L L++       +  + P      ++I++D    ++   K  D     AS+TK
Sbjct: 10  VWLLSICLCLTLWPFQATVKAESAPLDIRADAAILVDAQTGRILYEKNIDAVLGIASMTK 69

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           MMT Y++ + +++K++  +     S         ++ S + L++   +T  +   A+   
Sbjct: 70  MMTEYLLLDAIKAKRVKWDQTYTPSDYVYRLSQDRSLSNVPLRKDGQYTVRELYEAMAIY 129

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M+ K K++G+++  + N++GL               D
Sbjct: 130 SANAATVAIAEIIAGSEKNFVRMMNEKGKELGLKDYKFVNSTGLSNSDLKGFHPQGTSQD 189

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL----NKMH 235
           +  + +AR  A L   L K+ P+  +  SI K  +R        + N N +L        
Sbjct: 190 EENVMSARAMATLAYRLLKDHPEVLETASIPKKLFREGTDDEIRMDNWNWMLPGLVYGYE 249

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP------TSQERDQKALELITSFLE 289
            +DG+KTGYT  +G     + +     +++VVM         T + R ++  +L      
Sbjct: 250 GVDGLKTGYTEFAGNCFTGTAKRNGVRLISVVMNAKNASGKTTKEARFEETKKLFNYGFN 309

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYS 323
           + +L     K  Q   K+ L     K+  +  K  +  S
Sbjct: 310 QYSLQTLYPKGYQLKGKEKLPVAKGKEKEVRVKTGKKLS 348


>gi|213857663|ref|ZP_03384634.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 266

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 75/266 (28%), Positives = 122/266 (45%), Gaps = 19/266 (7%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNKNQMT 67
             + +  R +Q M     L    IS A             +      S I+ID N  ++ 
Sbjct: 1   MKTTFSARFMQRMALTTALCATFISTAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVL 60

Query: 68  GFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYL 120
             +  DE R PASLTKMMT Y+I + +++ K      + V   A        +  S ++L
Sbjct: 61  AEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDAWATGNPVFKGSSLMFL 120

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           K        Q I  +  +S ND   A  +F +GS+  F  LM++    +G++NT ++   
Sbjct: 121 KPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVH 180

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
           GL    Q ++ARD A++G  L ++ P  Y  +  ++F +      N N LL     N+DG
Sbjct: 181 GLDADGQYSSARDMALIGQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDG 240

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVA 265
           IKTG+T  +G+N+V S       +++
Sbjct: 241 IKTGHTSKAGYNLVASATEGQMRLIS 266


>gi|261392770|emb|CAX50346.1| D-alanyl-D-alanine carboxypeptidase (DD-peptidase;
           DD-carboxypeptidase; CPase; PBP5) [Neisseria
           meningitidis 8013]
 gi|325203950|gb|ADY99403.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
           M01-240355]
          Length = 389

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 145/271 (53%), Gaps = 16/271 (5%)

Query: 35  LFLSIIMISMASELHAKPKYSS--------------IVIDVNKNQMTGFKQ-DEPRYPAS 79
           + L +   + AS    KP   +              IVID+   Q    K  + P  PA+
Sbjct: 13  IILGVSHATAASPAPNKPAVHAAPTFQTPETLTAAHIVIDLQSRQTLSAKNINTPVEPAA 72

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LT++MT Y++F+ ++S  +     + + ++A     S+++++     +T++ +  +I  S
Sbjct: 73  LTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALS 132

Query: 140 ANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           AND +      +  GS + F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A L 
Sbjct: 133 ANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLS 192

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             L ++FP+YY  FSI+ F+++N    N N LL + +N++G+K G+T + G+N+  S   
Sbjct: 193 EALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSG 252

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLE 289
               I+ + +G  +++ R     +L+   L+
Sbjct: 253 NGRHILVITLGSESAETRASDNSKLLNWALQ 283


>gi|209885251|ref|YP_002289108.1| penicillin-binding protein 6 [Oligotropha carboxidovorans OM5]
 gi|209873447|gb|ACI93243.1| penicillin-binding protein 6 [Oligotropha carboxidovorans OM5]
          Length = 425

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 70/250 (28%), Positives = 116/250 (46%), Gaps = 9/250 (3%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++I+I+     +   K  DE R P+S+ K+MT  +IF  L   ++ L  +  +S+ A 
Sbjct: 65  APTAILIEAKTGSVLFEKNADELRAPSSMMKLMTAEVIFHALAKGEIKLTDEYRISENAW 124

Query: 112 TQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
            +       S ++    +  + +  +  L  +S ND   A  E  +GSE  F   M  +A
Sbjct: 125 RRGGAPSGGSTMFAAIHSIVSVDDLLHGLAIQSGNDSCIALAEGYAGSESAFVAKMQARA 184

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
           ++IG+  + + N +GL D +   + R+   L   L   +P  YK F  R+F +      N
Sbjct: 185 REIGLARSTFGNTNGLPDPDNKMSVRELGHLARHLILTYPDLYKLFGEREFTWNKIRQQN 244

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            N LL  +   DG+KTGYT+  GF +V S       +V VV G+  + +R   A  L+  
Sbjct: 245 RNPLLASLDGADGLKTGYTKEGGFGMVGSAVQNGTRLVVVVNGLSDAADRAAAAKRLLEW 304

Query: 287 F---LEKKTL 293
                E +TL
Sbjct: 305 GFKNFETRTL 314


>gi|325206288|gb|ADZ01741.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
           M04-240196]
          Length = 389

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 145/271 (53%), Gaps = 16/271 (5%)

Query: 35  LFLSIIMISMASELHAKPKYSS--------------IVIDVNKNQMTGFKQ-DEPRYPAS 79
           + L +   + AS    KP   +              IVID+   Q    K  + P  PA+
Sbjct: 13  IILGVSHATAASPAPNKPAVHAAPTFQTPETLTAAHIVIDLQSRQTLSAKNINTPVEPAA 72

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LT++MT Y++F+ ++S  +     + + ++A     S+++++     +T++ +  +I  S
Sbjct: 73  LTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALS 132

Query: 140 ANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           AND +      +  GS + F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A L 
Sbjct: 133 ANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLS 192

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             L ++FP+YY  FSI+ F+++N    N N LL + +N++G+K G+T + G+N+  S   
Sbjct: 193 EALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSG 252

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLE 289
               I+ + +G  +++ R     +L+   L+
Sbjct: 253 NGRHILVITLGSESAETRASDNSKLLNWALQ 283


>gi|15615440|ref|NP_243743.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Bacillus halodurans C-125]
 gi|10175498|dbj|BAB06596.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Bacillus halodurans C-125]
          Length = 395

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 78/308 (25%), Positives = 135/308 (43%), Gaps = 30/308 (9%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP----------------KYSSIVIDVNKNQMTG- 68
           R++  +  +LFL  + +  + + +A                    S +++D    Q+   
Sbjct: 2   RHLFRVFILLFLFFVSLQFSVQTNASAFVSEGETLNDAHFHLNSESVLLMDQLSGQVLYS 61

Query: 69  FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
              D+  YPAS+TK++T  I  E        L+  + VSKTA     +++YL E    T 
Sbjct: 62  EHGDKKMYPASITKIITALIAIEEGD-----LDDIVTVSKTATEVIGTRVYLVEGEEVTL 116

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK-KIGMQNTIYKNASGLHDKNQ 187
            + +  L+  S ND  TA  E   G+E+ FA  M+   + KIG++NT + N  GL DK  
Sbjct: 117 RKLVQGLMINSGNDAGTAIAEHFDGNEEAFAERMNRFVQVKIGVENTHFTNPHGLFDKEH 176

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKMHNIDGIKTG 243
            TTA D A++     +N  ++    S ++  +        I NH++LL       G+K G
Sbjct: 177 YTTAYDMAMITKYAMEN-EKFRDVASTKELEWIGEGWETTIYNHHRLLWDYPGTTGVKNG 235

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
           Y   SG+ +VT+    D  ++AV +  P +       + L+    E    K ++    + 
Sbjct: 236 YVSQSGYTLVTTAERDDQQLIAVTLNAPGASFSYNDTMTLLDYGFEH--FKTEKIKAGER 293

Query: 304 LSSTSLKK 311
              +  K+
Sbjct: 294 FVDSDGKE 301


>gi|325132290|gb|EGC54983.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
           M6190]
          Length = 389

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 146/271 (53%), Gaps = 16/271 (5%)

Query: 35  LFLSIIMISMASELHAKPKYSS--------------IVIDVNKNQMTGFKQ-DEPRYPAS 79
           + L +   + AS    KP   +              IVID+   Q+   K  + P  PA+
Sbjct: 13  IILGVSHATAASPAPNKPAVHAAPTFQTPETLTAAHIVIDLQSKQILSAKNINTPVEPAA 72

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LT++MT Y++F+ ++S  +     + + ++A     S+++++     +T++ +  +I  S
Sbjct: 73  LTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASEGSRMFVRPSDTVSTDKLLKGMIALS 132

Query: 140 ANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           AND +      +  GS + F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A L 
Sbjct: 133 ANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLS 192

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             L ++FP+YY  FSI+ F+++N    N N LL + +N++G+K G+T + G+N+  S   
Sbjct: 193 EALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSG 252

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLE 289
               I+ + +G  +++ R     +L+   L+
Sbjct: 253 NGRHILVITLGSESAETRASDNSKLLNWALQ 283


>gi|325133984|gb|EGC56639.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
           M13399]
          Length = 389

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 145/271 (53%), Gaps = 16/271 (5%)

Query: 35  LFLSIIMISMASELHAKPKYSS--------------IVIDVNKNQMTGFKQ-DEPRYPAS 79
           + L +   + AS    KP   +              IVID+   Q    K  + P  PA+
Sbjct: 13  IILGVSHATAASPAPNKPAVHAAPTFQTPETLTAAHIVIDLQSRQTLSAKNINTPVEPAA 72

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LT++MT Y++F+ ++S  +     + + ++A     S+++++     +T++ +  +I  S
Sbjct: 73  LTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALS 132

Query: 140 ANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           AND +      +  GS + F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A L 
Sbjct: 133 ANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLS 192

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             L ++FP+YY  FSI+ F+++N    N N LL + +N++G+K G+T + G+N+  S   
Sbjct: 193 EALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSG 252

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLE 289
               I+ + +G  +++ R     +L+   L+
Sbjct: 253 NGRHILVITLGSESAETRASDNSKLLNWALQ 283


>gi|258510666|ref|YP_003184100.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257477392|gb|ACV57711.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 455

 Score =  249 bits (635), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 70/249 (28%), Positives = 114/249 (45%), Gaps = 11/249 (4%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           AS   +    +++V+D++   +   K    P YPAS+TK+MT  +          HL   
Sbjct: 63  ASSWPSIVSQAAVVMDMDTGAVVYAKHSTAPHYPASITKIMTALLALRLG-----HLTDV 117

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           +  S  A  Q P KLY++     T +  +  L+  SAND +    E   GS   FA +M+
Sbjct: 118 LTASTDAVRQPPDKLYMRAGEKATLKDLLYGLLIDSANDAAVEIAERYGGSVAHFADMMN 177

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR- 222
            +A+ +G  +T + N SGL D   +TTA D A++     +  P++      R F ++   
Sbjct: 178 AEARALGATHTHFVNPSGLPDPRHVTTAYDMAVIARAAMQ-IPEFRTIVDTRSFDWKGTA 236

Query: 223 ---IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
               +TN N++L       G+KTG+T  +   +V +        +AV+M  PT  E  Q 
Sbjct: 237 WQATLTNLNRMLFTYPGAIGVKTGFTSVAHETLVVAATRGGTTFLAVLMDCPTDAEIRQD 296

Query: 280 ALELITSFL 288
           A  L+    
Sbjct: 297 ATNLLNYAF 305


>gi|239832000|ref|ZP_04680329.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium
           LMG 3301]
 gi|239824267|gb|EEQ95835.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium
           LMG 3301]
          Length = 398

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 70/262 (26%), Positives = 128/262 (48%), Gaps = 6/262 (2%)

Query: 33  KILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFE 91
            +L  +I   +             +++D     +   K    P  PASL K+MT  ++FE
Sbjct: 21  AVLVPAICSPAPVDAAFVTKAPQVLLLDDRSGTVLLSKNANVPIPPASLAKLMTAEVVFE 80

Query: 92  YLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            L+     L+T  PVS+ A          S ++ + K+  T    +  +I ++AND +  
Sbjct: 81  ALEKGLTTLDTAYPVSENAWRTGGAPSGTSTMFARIKSSPTVADLLQGMIVQAANDGAIV 140

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E ++GSE+ FA  M+++A+++G+  + + N++GL  + Q  + +D   L   +R   P
Sbjct: 141 LAEGLAGSERAFAERMNDRARELGLAASRFVNSTGLPAEGQTVSLQDLVRLAQHIRTAHP 200

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           +YYKY++   F + N +  N N LL      DG+ TG+T  SGF +V S       +   
Sbjct: 201 EYYKYYAQPAFTWNNIMQRNRNPLLRLDVGADGMGTGFTEASGFALVGSAEQNGRRLYLA 260

Query: 267 VMGMPTSQERDQKALELITSFL 288
           + G+ + +ER+++A  L+   +
Sbjct: 261 MSGLSSVKEREEEAKRLLQWGM 282


>gi|46202335|ref|ZP_00208483.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 404

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 81/278 (29%), Positives = 146/278 (52%), Gaps = 2/278 (0%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQ 94
            L++ +      + A+P  +S+ +D+    +    +   P +PASLTKMMT Y+ F  ++
Sbjct: 1   MLALGLALPTGMVRAEPS-ASLAVDLGSGTVIAESRGGMPHHPASLTKMMTAYVAFGAIK 59

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
           + K+  +  I VS+ AA+Q  + L L      +    + A+I RSAND + A  E ++GS
Sbjct: 60  AGKVSQDDIITVSERAASQGGATLDLGPGERISLGAALKAMIVRSANDAAVAVAEHVAGS 119

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           E  FA+ M+ +A ++GM ++ ++NA+G+     +++ RD AIL + + ++FP +   FS 
Sbjct: 120 ESAFAVRMTEEAARLGMTSSSFRNATGMTAAGHVSSPRDMAILAMAIERDFPAFRPMFSS 179

Query: 215 RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           R   ++ R++   N  L      +G+KTG+T ++G+N+V          +AVVMG  +S 
Sbjct: 180 RDTTWKGRVLPTVNGFLGAYAGAEGMKTGFTCSAGYNLVAIAHRGGRRALAVVMGAGSSA 239

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           ER      L+   L+ +    +      N+  T   +S
Sbjct: 240 ERLGAIRRLMDQALQAEPATGRSLAGLGNVGGTPPDRS 277


>gi|291544371|emb|CBL17480.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. 18P13]
          Length = 378

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 62/274 (22%), Positives = 114/274 (41%), Gaps = 18/274 (6%)

Query: 24  IQRNIQLMGKILFLSIIMISM--ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASL 80
           +++ + LM  +L    +      A++       + ++++ +  ++   K  DE R  AS 
Sbjct: 1   MKKWLSLMLAVLCCLHLCCPAVHAADPLGISAQAYVLMEADTGKVLLSKNGDEKRPIAST 60

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           TK+MT  +  E        L+    V   A     S + L+E    T       ++  S 
Sbjct: 61  TKIMTTLLCLESG-----GLDDWFVVDPEAIRVEGSSMGLQEGDVVTKRMLCYGMLLPSG 115

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND + A    ++GS  +FA LM+ +A +IGM +T +   SGL  +    + RD  +L   
Sbjct: 116 NDAANATAVRLAGSIPEFAKLMNARAARIGMTHTCFVTPSGLDAEGHGASVRDMGLLART 175

Query: 201 LRKNFPQYYKYFSIRKFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
             +N P +    S  +          NR + N NKLL     + G+KTG+T  +G  +V+
Sbjct: 176 AMQN-PDFRAICSQSRAEVCFGNPPYNRWLKNTNKLLTMYEGVVGVKTGFTDAAGRCLVS 234

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
                   ++ V +     ++     ++L     
Sbjct: 235 FCERDGVSLLCVTLHA---KDDWNDHMKLYDYGF 265


>gi|114705796|ref|ZP_01438699.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506]
 gi|114538642|gb|EAU41763.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506]
          Length = 356

 Score =  248 bits (634), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 77/266 (28%), Positives = 138/266 (51%), Gaps = 4/266 (1%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTK 82
           ++ +++ +     + + +I      HA P   ++V+D     +   ++   P YPAS TK
Sbjct: 1   MRDSLRRLRARAVIGLPLILTTPFAHATP---ALVVDAGTRAVLFAEEAGHPWYPASTTK 57

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +M+ Y+ FE L++ ++ L+T + +SK A T+      L        E  + A++  SAN+
Sbjct: 58  LMSAYVTFEALRAGEVSLDTPVTISKRAMTEASLHAGLSAGRAMRLEDALFAMVVGSANE 117

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
           VS +  E ++GS + FA  M+  A ++GM  T + N +GL   +Q TTARD A+LG+   
Sbjct: 118 VSISLAERVAGSVEAFAARMNATAARLGMTATRFDNPNGLFAASQHTTARDLALLGLAAT 177

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           ++FP+Y + F+        + +   N LL       G+KTG+   SG N+V         
Sbjct: 178 RDFPEYRELFTTSIVVIDGKKLETENVLLTDFPGTLGLKTGFLCASGRNLVAMAERDGRR 237

Query: 263 IVAVVMGMPTSQERDQKALELITSFL 288
           I+ V++G  T +ER ++A +L++   
Sbjct: 238 ILVVLLGATTGRERAERAAKLMSEAF 263


>gi|138895855|ref|YP_001126308.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134267368|gb|ABO67563.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 446

 Score =  248 bits (634), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 129/291 (44%), Gaps = 19/291 (6%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK---PKYSSIVIDVNKNQMTGFKQDE-PRYPAS 79
           ++R  +L+  I   + IM  +  +LHA       S+I+I+ +  ++   K     R  AS
Sbjct: 66  MKRWKRLVWLIALTAGIMSCLPGKLHAMNGVSAKSAILIEQHSGRILFAKDAHTKRRIAS 125

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MT  +  E  +     L+  + VS  A     S +YL++         +  L+ RS
Sbjct: 126 ITKIMTAILAIESGK-----LDDTVTVSARAVRTEGSSIYLRQGEKMKLRDLVYGLMLRS 180

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILG 198
            ND + A  E + GS + F  LM+ KA +IGM++T + N  GL D ++  +TA D A+L 
Sbjct: 181 GNDAAVAIAEHVGGSVEGFVFLMNEKAAEIGMRDTEFANPHGLDDAESHYSTAYDMALLM 240

Query: 199 ILLRKNFPQYYKYFSIRKFRY-------RNRIITNHNKLLNK-MHNIDGIKTGYTRNSGF 250
               KN  ++ +    + +R          R+  N NKLL        G KTGYT+ +  
Sbjct: 241 QYAMKN-KEFRRISGTKVYRAPAPPGEDGARVWRNKNKLLTSLYEYCTGGKTGYTKRAHR 299

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRK 301
            +VT+       +VAV +             E   S      +  ++  ++
Sbjct: 300 TLVTTASKDGIDLVAVTLDASDDWNDHIAMYEYGFSNYRIAKVSGKRIVKR 350


>gi|296313509|ref|ZP_06863450.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria polysaccharea
           ATCC 43768]
 gi|296839954|gb|EFH23892.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria polysaccharea
           ATCC 43768]
          Length = 389

 Score =  248 bits (634), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 72/254 (28%), Positives = 143/254 (56%), Gaps = 4/254 (1%)

Query: 40  IMISMASELHAKPKYSS--IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSK 96
           + +  A  L      ++  IVID+   Q    K  + P  PA+LT++MT Y++F+ ++S 
Sbjct: 30  LTVHAAPTLQTPETLTAAHIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSG 89

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSE 155
            +     + + ++A     S+++++     +T++ +  +I  SAND +      +  GS 
Sbjct: 90  NIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSI 149

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           + F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A+L   L ++FP+YY  FSI+
Sbjct: 150 ENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLALLSEALMRDFPEYYPLFSIK 209

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
            F+++N    N N LL + +N++G+K G+T + G+N+  S       I+ + +G  +++ 
Sbjct: 210 SFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAET 269

Query: 276 RDQKALELITSFLE 289
           R     +L+   L+
Sbjct: 270 RASDNSKLLNWALQ 283


>gi|194098190|ref|YP_002001238.1| Penicillin-binding protein [Neisseria gonorrhoeae NCCP11945]
 gi|291044211|ref|ZP_06569920.1| penicillin-binding protein [Neisseria gonorrhoeae DGI2]
 gi|193933480|gb|ACF29304.1| Penicillin-binding protein [Neisseria gonorrhoeae NCCP11945]
 gi|291011105|gb|EFE03101.1| penicillin-binding protein [Neisseria gonorrhoeae DGI2]
 gi|317163912|gb|ADV07453.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 441

 Score =  248 bits (634), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 145/271 (53%), Gaps = 16/271 (5%)

Query: 35  LFLSIIMISMASELHAKPKYSS--------------IVIDVNKNQMTGFKQ-DEPRYPAS 79
           + L +   + AS    +P   +              IVID+   Q    K  + P  PA+
Sbjct: 65  IILGVSHATAASPAPNRPTVHAAPTLQTPETLTAAHIVIDLQSRQTLSAKNTNTPVEPAA 124

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LT++MT Y++F+ ++S  +     + + ++A     S+++++     +T++ +  +I   
Sbjct: 125 LTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALC 184

Query: 140 ANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           AND +    + +  GS + F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A+L 
Sbjct: 185 ANDAALTLADRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLGREGQVSTAKDLALLS 244

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             L ++FP+YY  FSI+ F++ N    N N LL + +N++G+K G+T + G+N+  S   
Sbjct: 245 EALMRDFPEYYPLFSIKSFKFENIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSG 304

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLE 289
               I+ + +G  +++ R     +L+   L+
Sbjct: 305 NGRHILVITLGSESAETRASDNSKLLNRALQ 335


>gi|75763243|ref|ZP_00743000.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74489272|gb|EAO52731.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 448

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 81/357 (22%), Positives = 157/357 (43%), Gaps = 37/357 (10%)

Query: 9   SAKKTFLTYPYGSIYIQRNIQLMGKI-LFLSIIMI---SMASELHA--KPKYSSIVIDVN 62
            + K         ++ +R I ++  + LF S+ +    + A  + A      S+I+I+ N
Sbjct: 1   MSTKILEVTEVKGMFCKRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEAN 60

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSK 117
             ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S+ A      ++ S 
Sbjct: 61  SGKILYQKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSN 120

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ GM++  + 
Sbjct: 121 VPLENGGSYTVKELYEAMAIYSANGATIALVEEIAGKEGNFVKMMNDKSKEFGMKDYKFV 180

Query: 178 NASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           N++GL               D+    +ARD AIL   L ++FP+      I K  ++   
Sbjct: 181 NSTGLTNQDLKGYHLEGTTLDEKNKMSARDCAILAQRLIQDFPKILNTAKIPKKTFQEGG 240

Query: 222 ---RIITNHNKLLN-----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                + N N +L      +   +DG+KTG T  +G     ++      +++VV+   + 
Sbjct: 241 KYPIDMANFNWMLKXFXLXQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSH 300

Query: 274 QERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
             R  +  +L         +K+   + KD++        +   K K    Q K+  +
Sbjct: 301 TARFDETKKLYDYGFANFEVKN--VYGKDSVVKGHETVRVANAKEKDVVVQTKQAVS 355


>gi|51893513|ref|YP_076204.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51857202|dbj|BAD41360.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 424

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 113/243 (46%), Gaps = 13/243 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S I++D    Q+   K  DE    AS TK+MT  +  E  +     L+  + +   A 
Sbjct: 42  AESGILMDCATGQVLWEKNPDERLAIASTTKIMTALLAIESGR-----LDETVTIPPEAE 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               SK+YL + T +T  + + ALI  SAND + A   F+ GSE+ F   M+ KA+ +G+
Sbjct: 97  LIEGSKVYLTQGTTYTLRELLEALILESANDAAVAIAIFLGGSEEAFVRQMNEKARALGL 156

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------NRIIT 225
            +T ++N  GL +    ++ARD A LG +   + P Y +        +        R I 
Sbjct: 157 TDTQFRNPHGLDEDGHYSSARDLARLGRVAMAD-PVYREIAGTEWLTFPWPEMETTREIY 215

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N N L+ +M    G+K GYT  + F +V S       ++ V++G P  ++       L+ 
Sbjct: 216 NRNLLIQRMPEATGVKNGYTEAALFTLVGSAAADGREVIGVLLGNPDKEQMYADMERLLR 275

Query: 286 SFL 288
             L
Sbjct: 276 HGL 278


>gi|308389049|gb|ADO31369.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria
           meningitidis alpha710]
          Length = 389

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 148/271 (54%), Gaps = 16/271 (5%)

Query: 35  LFLSIIMISMASELHAKP-KYSS-------------IVIDVNKNQMTGFKQ-DEPRYPAS 79
           + L I   + AS +  +P  +++             IVID+   Q    K  + P  PA+
Sbjct: 13  IILGISHATAASPVPNRPTAHAAPTLQTPETLTAAHIVIDLQSRQTLSAKNINTPVEPAA 72

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LT++MT Y++F+ ++S  +     + + ++A     S+++++     +T++ +  +I  S
Sbjct: 73  LTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALS 132

Query: 140 ANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           AND +      +  GS + F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A L 
Sbjct: 133 ANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLS 192

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             L ++FP+YY  FSI+ F+++N    N N LL + +N++G+K G+T + G+N+  S   
Sbjct: 193 EALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSG 252

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLE 289
               I+ + +G  +++ R     +L+   L+
Sbjct: 253 NGRHILVITLGSESAETRASDNSKLLNWALQ 283


>gi|325202334|gb|ADY97788.1| penicillin-binding protein 6 precursor [Neisseria meningitidis
           M01-240149]
 gi|325207913|gb|ADZ03365.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
           NZ-05/33]
          Length = 389

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 147/271 (54%), Gaps = 16/271 (5%)

Query: 35  LFLSIIMISMASELHAKPKYSS--------------IVIDVNKNQMTGFKQ-DEPRYPAS 79
           + L +   + AS    KP   +              IVID+   Q+   K  + P  PA+
Sbjct: 13  IILGVSHATAASPAPNKPAVHAAPTFQTPETLTAAHIVIDLQSKQILSAKNINTPVEPAA 72

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LT++MT Y++F+ ++S  +     + + ++A     S+++++     +T++ +  +I  S
Sbjct: 73  LTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALS 132

Query: 140 ANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           AND +      +  GS + F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A+L 
Sbjct: 133 ANDAALTLVGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLALLS 192

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             L ++FP+YY  FSI+ F+++N    N N LL + +N++G+K G+T + G+N+  S   
Sbjct: 193 EALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSG 252

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLE 289
               I+ + +G  +++ R     +L+   L+
Sbjct: 253 NGRHILVITLGSESAETRASDNSKLLNRALQ 283


>gi|293399410|ref|ZP_06643563.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
           5/6) [Neisseria gonorrhoeae F62]
 gi|291609979|gb|EFF39101.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
           5/6) [Neisseria gonorrhoeae F62]
          Length = 441

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 145/271 (53%), Gaps = 16/271 (5%)

Query: 35  LFLSIIMISMASELHAKPKYSS--------------IVIDVNKNQMTGFKQ-DEPRYPAS 79
           + L +   + AS    +P   +              IVID+   Q    K  + P  PA+
Sbjct: 65  IILGVSHATAASPAPNRPTVHAAPTLQTPETLTAAHIVIDLQSRQTLSAKNTNTPVEPAA 124

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LT++MT Y++F+ ++S  +     + + ++A     S+++++     +T++ +  +I   
Sbjct: 125 LTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALC 184

Query: 140 ANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           AND +    + +  GS + F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A+L 
Sbjct: 185 ANDAALTLADRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLGREGQVSTAKDLALLS 244

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             L ++FP+YY  FSI+ F++ N    N N LL + +N++G+K G+T + G+N+  S   
Sbjct: 245 EALMRDFPEYYPLFSIKSFKFENIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSG 304

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLE 289
               I+ + +G  +++ R     +L+   L+
Sbjct: 305 NGRHILVITLGSESTETRASDNSKLLNRALQ 335


>gi|315643932|ref|ZP_07897102.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           vortex V453]
 gi|315280307|gb|EFU43596.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           vortex V453]
          Length = 336

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/279 (27%), Positives = 135/279 (48%), Gaps = 23/279 (8%)

Query: 36  FLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFE 91
           F+ I+M    + +   P     S+I+I     ++      D P  PAS++KMMT  ++ +
Sbjct: 46  FVVILMAVYITRVIIPPSIKASSAILIHAETGRVLYAQHADLPLPPASMSKMMTELLVLD 105

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            ++S +   + ++ +S+ AA    S + + E   +T  Q   ALI  SAND + A  E +
Sbjct: 106 AVRSGQHAWDEEVSISRYAAGVPGSGIGMVEGESYTLTQLFQALIIHSANDAAVAIAEHL 165

Query: 152 SGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDKN------------QITTARDQAILG 198
            GSE +F   M+ +AK+IG+ + T++ NASGL   +             I TARD A+L 
Sbjct: 166 KGSETQFVKEMNARAKEIGLSDRTVFANASGLPAADLASFAEAATEGETIMTARDSAMLA 225

Query: 199 ILLRKNFPQYYKYFSIRKF--RYRNRIITNHNKLL----NKMHNIDGIKTGYTRNSGFNI 252
             +    P   +  S R F    ++  +   N +L    +     DG KTGYT ++G+  
Sbjct: 226 RWIMNKHPDLLEVTSQRDFPLPQKDLTLHTTNLMLPGEAHGYVGNDGFKTGYTSSAGYCF 285

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
             +     + +++VVMG  ++ +R  +  +L+    E++
Sbjct: 286 TGTAARGGNRLISVVMGTESTDQRFTETRKLMNYGFERQ 324


>gi|254714078|ref|ZP_05175889.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
 gi|254716865|ref|ZP_05178676.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
 gi|261218667|ref|ZP_05932948.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
 gi|261321835|ref|ZP_05961032.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
 gi|260923756|gb|EEX90324.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
 gi|261294525|gb|EEX98021.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
          Length = 396

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 123/239 (51%), Gaps = 6/239 (2%)

Query: 56  SIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +++ID     +   K  D+P  PASL K++T  ++FE L+  +  L T  PVS+ A    
Sbjct: 42  ALLIDDRSGTVLLSKGADKPVPPASLAKLITAEVVFEALEKGRTTLETAYPVSEYAWRTG 101

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S ++ + K+  T    +  +I +SAND +    E ++GSE+ FA  M+ +AK++
Sbjct: 102 GAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQRAKEL 161

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           G+ ++ + N++GL    Q+ T  D   L   +    P+YY+Y+    + + N    N N 
Sbjct: 162 GLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIHAAHPEYYRYYEQPAYTWNNITQRNRNP 221

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           LL      DG+ TG+T  SG+ +V S       +   + G+ + +ER+++A +LI   +
Sbjct: 222 LLRLEVGADGMGTGFTEASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLIQWGM 280


>gi|325142125|gb|EGC64550.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
           961-5945]
 gi|325198078|gb|ADY93534.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
           G2136]
          Length = 389

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/254 (28%), Positives = 142/254 (55%), Gaps = 4/254 (1%)

Query: 40  IMISMASELHAKPKYSS--IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSK 96
           + +  A  L      ++  IVID+   Q    K  + P  PA+LT++MT Y++F+ ++S 
Sbjct: 30  LTVHAAPTLQTPETLTAAHIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSG 89

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSE 155
            +     + + ++A     S+++++     +T++ +  +I  SAND +      +  GS 
Sbjct: 90  NIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSI 149

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           + F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A L   L ++FP+YY  FSI+
Sbjct: 150 ENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIK 209

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
            F+++N    N N LL + +N++G+K G+T + G+N+  S       I+ + +G  +++ 
Sbjct: 210 SFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAET 269

Query: 276 RDQKALELITSFLE 289
           R     +L+   L+
Sbjct: 270 RASDNSKLLNWALQ 283


>gi|315122117|ref|YP_004062606.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495519|gb|ADR52118.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 282

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 85/280 (30%), Positives = 149/280 (53%), Gaps = 3/280 (1%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PA 78
           G   I+  +  +  ++ + I      +E +  P Y+  ++D N   +      +  + PA
Sbjct: 4   GDSIIEYFLIRITALILIGIYPFQAIAEENNLPYYT--LLDSNTGHVIAENNPDKLWNPA 61

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           SLTK+MT Y++F +L+ KK+ L T I +SK A+ Q PS    K+ +  T +  +  LI +
Sbjct: 62  SLTKLMTAYVVFSFLEQKKITLETPITISKNASEQPPSNSTFKKGSILTLDNALKLLIVK 121

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           SAND++ A  E +  +E++F   M++ A+ +G+  T + N+ G+      TTARD  IL 
Sbjct: 122 SANDIAVAIAESLCNTEEEFVKHMNDSAQTLGLLRTKFMNSHGVVQNGHYTTARDMTILS 181

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             ++ +F QY  YF I+  + +N+   N N  +      DG+KTG+T  SGFNIV S   
Sbjct: 182 WRIKTHFSQYAHYFQIKGLKIKNKKYPNTNWAIGIFLGADGMKTGFTCASGFNIVASASQ 241

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
            +  ++ VV+G      R+Q + +L+++  +KK +  +  
Sbjct: 242 GNRSLITVVLGALDRDSRNQISEKLLSAGFDKKNIGIKSI 281


>gi|218666016|ref|YP_002426742.1| D-alanyl-D-alanine carboxypeptidase, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218518229|gb|ACK78815.1| D-alanyl-D-alanine carboxypeptidase, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 323

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 131/289 (45%), Gaps = 8/289 (2%)

Query: 10  AKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF 69
              T   +P    ++   + L+   LF      +  S L      + I+++ +   +   
Sbjct: 19  GPSTVKYFPSTGWWLFSWLSLVAIFLFCIPRAEAETSGLPPIDARAYILMNADTGAIIAT 78

Query: 70  KQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           K     Y  AS+TK+MTLY++F+ + S  L LN      + A     S +++     FT 
Sbjct: 79  KNAYRPYAIASITKLMTLYLLFKDIDSGHLQLNQHFVPCRAALQTGGSSMFMHPGMPFTI 138

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            Q IL +   S ND +      ++GS   F   M+  A+KIGM +T + +  GL   N +
Sbjct: 139 AQLILGMTVPSGNDAAVETAHLVAGSVPAFVAEMNRTARKIGMLSTTFYDPDGLPHPNNM 198

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
            +  D A+L   L   FPQ+  +F    F Y      N N L+ ++  I G+K+GYT  +
Sbjct: 199 ASPYDVAVLTRTLMTQFPQFMPFFRHENFTYAGITSPNPNLLVGRVPFITGMKSGYTDAA 258

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQE------RDQ-KALELITSFLEK 290
           G  +V +       ++AV++G+P+ ++      R   ++L+L+     +
Sbjct: 259 GHCLVATGTQNGISLIAVILGVPSFRDEGRGFWRASWQSLKLLDWGFAR 307


>gi|30020579|ref|NP_832210.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
 gi|29896130|gb|AAP09411.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
          Length = 437

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/346 (22%), Positives = 155/346 (44%), Gaps = 36/346 (10%)

Query: 19  YGSIYIQRNIQLMGKI-LFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ- 71
              ++ +R I ++  + +F S+++    +     P       S+I+I+ N  ++   K  
Sbjct: 1   MKGMFCKRVIAIVTVLTIFCSMVVTIGKAAAETDPAIDVEAGSAILIEANSGKILYEKNA 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           DE    AS+TKMM+ Y++ E +   KL  + ++ +S+ A      ++ S + L+    +T
Sbjct: 61  DESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYT 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
            ++   A+   SAN  + A  E I+G E  F  +M++K+K+ GM++  + N++GL +++ 
Sbjct: 121 VKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDL 180

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RIITNHN 228
                           +ARD AIL   L ++FPQ      I K  ++        + N N
Sbjct: 181 KGYHLEGTTLEEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFN 240

Query: 229 KLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +L     +   +DG+KTG T  +G     ++      +++VV+   +   R  +  +L 
Sbjct: 241 WMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLY 300

Query: 285 TSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
                   +K+   + KD++        +   K K    Q K+  +
Sbjct: 301 DYGFANFEVKN--VYGKDSVIKGHETVRVANAKEKDVVVQTKQAVS 344


>gi|161869810|ref|YP_001598979.1| D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis 053442]
 gi|161595363|gb|ABX73023.1| D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis 053442]
          Length = 389

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/274 (28%), Positives = 147/274 (53%), Gaps = 14/274 (5%)

Query: 30  LMGKILFLSIIMISMA----SELHAKPKY--------SSIVIDVNKNQMTGFKQ-DEPRY 76
           L+  IL +S    +         HA P          + IVID+   Q    K  + P  
Sbjct: 10  LLSIILGVSHATAASPAPNRPTAHAAPTLQTPETLTAAHIVIDLQSRQTLSAKNINTPVE 69

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PA+LT++MT Y++F+ ++S  +     + + ++A     S+++++     +T++ +  +I
Sbjct: 70  PAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMI 129

Query: 137 TRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
             SAND +      +  GS + F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A
Sbjct: 130 ALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLA 189

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
            L   L ++FP+YY  FSI+ F+++N    N N LL + +N++G+K G+T + G+N+  S
Sbjct: 190 QLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVS 249

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
                  I+ + +G  +++ R     +L+   L+
Sbjct: 250 YSGNGRHILVITLGSESAETRASDNSKLLNWALQ 283


>gi|254673307|emb|CBA08444.1| putative penicillin-binding protein precursor [Neisseria
           meningitidis alpha275]
          Length = 389

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 145/271 (53%), Gaps = 16/271 (5%)

Query: 35  LFLSIIMISMASELHAKPKYSS--------------IVIDVNKNQMTGFKQ-DEPRYPAS 79
           + L +   + AS    KP   +              IVID+   Q    K  + P  PA+
Sbjct: 13  IILGVSHATAASPAPNKPAVHAAPTFQTPETLTAAHIVIDLQSRQTLSAKNINTPVEPAA 72

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LT++MT Y++F+ ++S  +     + + ++A     S+++++     +T++ +  +I  S
Sbjct: 73  LTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALS 132

Query: 140 ANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           AND +      +  GS + F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A L 
Sbjct: 133 ANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLS 192

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             L ++FP+YY  FSI+ F+++N    N N LL + +N++G+K G+T + G+N+  S   
Sbjct: 193 EALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSG 252

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLE 289
               I+ + +G  +++ R     +L+   L+
Sbjct: 253 NGRHILVITLGSESAETRASDNSKLLNRALQ 283


>gi|254804742|ref|YP_003082963.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria
           meningitidis alpha14]
 gi|254668284|emb|CBA05194.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria
           meningitidis alpha14]
          Length = 389

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/274 (28%), Positives = 148/274 (54%), Gaps = 14/274 (5%)

Query: 30  LMGKILFLSIIMISMA----SELHAKPKY--------SSIVIDVNKNQMTGFKQ-DEPRY 76
           L+  IL +S    +        +HA P          + IVID+   Q    K  + P  
Sbjct: 10  LLSIILGVSHATAASPAPNRPTVHAAPTLQTPETLTAAHIVIDLQSRQTLSAKNINTPVE 69

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PA+LT++MT Y++F+ ++S  +     + + ++A     S+++++      T++ +  +I
Sbjct: 70  PAALTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASEGSRMFVRPGDTVGTDKLLKGMI 129

Query: 137 TRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
             SAND +      +  GS + F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A
Sbjct: 130 ALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLA 189

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           +L   L ++FP+YY  FSI+ F+++N    N N LL + +N++G+K G+T + G+N+  S
Sbjct: 190 LLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVS 249

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
                  I+ + +G  +++ R     +L+   L+
Sbjct: 250 YTGNGRHILVITLGSESAEIRASDNSKLLNWALQ 283


>gi|228908234|ref|ZP_04072080.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis IBL 200]
 gi|228851432|gb|EEM96240.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis IBL 200]
          Length = 442

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/351 (23%), Positives = 155/351 (44%), Gaps = 36/351 (10%)

Query: 14  FLTYPYGSIYIQRNIQLMGKI-LFLSIIMI---SMASELHA--KPKYSSIVIDVNKNQMT 67
                   ++ +R I ++  + LF S+ +    + A  + A      S+I+I+ N  ++ 
Sbjct: 1   MEVTEVKGMFCKRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKIL 60

Query: 68  GFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKE 122
             K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S+ A      ++ S + L+ 
Sbjct: 61  YQKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLEN 120

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
              +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ GM++  + N++GL
Sbjct: 121 GGSYTVKELYEAMAIYSANGATIALVEEIAGKEGNFVKMMNDKSKEFGMKDYKFVNSTGL 180

Query: 183 H--------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RI 223
                          D+    +ARD AIL   L ++FPQ      I K  ++        
Sbjct: 181 TNQDLKGYHLEGTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPID 240

Query: 224 ITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           + N N +L     +   +DG+KTG T  +G     ++      +++VV+   +   R  +
Sbjct: 241 MANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDE 300

Query: 280 ALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
             +L         +K+   + KD++        +   K K    Q K+  +
Sbjct: 301 TKKLYDYGFANFEVKN--VYGKDSVVKGHETVRVANAKEKDVVVQTKQAVS 349


>gi|198284088|ref|YP_002220409.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|198248609|gb|ACH84202.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 317

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 131/289 (45%), Gaps = 8/289 (2%)

Query: 10  AKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF 69
              T   +P    ++   + L+   LF      +  S L      + I+++ +   +   
Sbjct: 13  GPSTVKYFPSTGWWLFSWLSLVAIFLFCIPRAEAETSGLPPIDARAYILMNADTGAIIAT 72

Query: 70  KQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           K     Y  AS+TK+MTLY++F+ + S  L LN      + A     S +++     FT 
Sbjct: 73  KNAYRPYAIASITKLMTLYLLFKDIDSGHLQLNQHFVPCRAALQTGGSSMFMHPGMPFTI 132

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            Q IL +   S ND +      ++GS   F   M+  A+KIGM +T + +  GL   N +
Sbjct: 133 AQLILGMTVPSGNDAAVETAHLVAGSVPAFVAEMNRTARKIGMLSTTFYDPDGLPHPNNM 192

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
            +  D A+L   L   FPQ+  +F    F Y      N N L+ ++  I G+K+GYT  +
Sbjct: 193 ASPYDVAVLTRTLMTQFPQFMPFFRHENFTYAGITSPNPNLLVGRVPFITGMKSGYTDAA 252

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQE------RDQ-KALELITSFLEK 290
           G  +V +       ++AV++G+P+ ++      R   ++L+L+     +
Sbjct: 253 GHCLVATGTQNGISLIAVILGVPSFRDEGRGFWRASWQSLKLLDWGFAR 301


>gi|297529545|ref|YP_003670820.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
           sp. C56-T3]
 gi|297252797|gb|ADI26243.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
           sp. C56-T3]
          Length = 460

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 114/259 (44%), Gaps = 16/259 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I+I+ +  ++   K     R  AS+TK+MT  +  E  +     ++  + VS  A 
Sbjct: 112 AKSAILIEQHSGRVLFAKDAYTKRRIASITKIMTAILAIESGK-----MDDTVTVSARAV 166

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S +YL++         +  L+ RS ND + A  E + GS + F  LM+ KA +IGM
Sbjct: 167 RTEGSSIYLRQGEKIKLRDLVYGLMLRSGNDAAVAIAEHVGGSVEGFVFLMNQKAAEIGM 226

Query: 172 QNTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-------RNRI 223
           ++T + N  GL D +N  +TA D A+L     KN  ++ +    + +R          R+
Sbjct: 227 RDTEFANPHGLDDAENHYSTAYDMAMLMQYAMKN-KEFRRISGTKVYRAPAPPGEDGARV 285

Query: 224 ITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
             N NKLL        G KTGYT+ +   +VT+       ++AV +  P          E
Sbjct: 286 WRNKNKLLTSLYEYCTGGKTGYTKRAHRTLVTTASKGGVDLIAVTLDAPDDWNDHIAMYE 345

Query: 283 LITSFLEKKTLKHQQTHRK 301
              S      +  ++   K
Sbjct: 346 YGFSHYHIAKVSSERVVDK 364


>gi|152973863|ref|YP_001373380.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152022615|gb|ABS20385.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH
           391-98]
          Length = 439

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/356 (21%), Positives = 159/356 (44%), Gaps = 48/356 (13%)

Query: 19  YGSIYIQRNIQLMGKI-LFLSIIMI--SMASELHAK---PKYSSIVIDVNKNQMTGFKQ- 71
              ++ +R I ++  + LF S  +   S+++E  +       ++I+++ +  ++   K  
Sbjct: 1   MKGMFCKRFIAMVTVLTLFFSAFVTYSSVSAETSSALNIEAGAAILVEADSGKILYQKNA 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           DE    AS+TKMM+ Y++ + + + KL  + +I VS+ A      ++ S + L+    +T
Sbjct: 61  DELLAIASMTKMMSEYLVHKAVDTGKLKWDQKIKVSEYAHKISQDRSLSNVPLENGGSYT 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----- 182
            ++   A+   SAN  + A  E ++G E  F  +M+++AK+ G++N  + N++GL     
Sbjct: 121 VKELYEAMAIYSANGATIALAEAVAGKEADFVKMMNDQAKEFGLKNYKFVNSTGLTNKDL 180

Query: 183 ---------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----IITNHN 228
                     D+    +ARD AIL   L ++FP+      I K  ++        + N N
Sbjct: 181 KGQHPEGTTPDEENKMSARDVAILAQHLIQDFPKVLDTAKIPKKVFQEGGKYPVKMDNWN 240

Query: 229 KLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +L     +   +DG+KTG T  +G     +       +++VV+   +   R  +  +L 
Sbjct: 241 WMLKGLIKQYEGVDGLKTGSTPEAGDCFTGTAERNGMRLISVVIKTNSHTARFDETKKLF 300

Query: 285 TSFLEK----------KTLKHQQTHR----KDNLSSTSLKKSLMIKKLKRTYSQFK 326
                            ++K  +T R    KD   +   K+++ +   K +   +K
Sbjct: 301 DYGFTNFDVKKVYPKGSSVKGYETVRVENAKDKDVAVETKQAITLPMPKGSKDVYK 356


>gi|229173162|ref|ZP_04300712.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus MM3]
 gi|228610339|gb|EEK67611.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus MM3]
          Length = 442

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 82/351 (23%), Positives = 157/351 (44%), Gaps = 36/351 (10%)

Query: 14  FLTYPYGSIYIQRNIQLMGKI-LFLSIIMIS---MASELHA--KPKYSSIVIDVNKNQMT 67
                   ++ +R I ++  + LF SI++ S    A  + A      S+I+++ N  ++ 
Sbjct: 1   MEVTEVKGMFCKRFIAIVTVLTLFCSIVVTSGRATAETVSAIDVEAGSAILVEANSGKIL 60

Query: 68  GFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKE 122
             K  DE    AS+TKMM+ Y++ E +   K+  + ++ +S+ A      ++ S + L+ 
Sbjct: 61  YEKNADESLAIASMTKMMSEYLVHEAVDKGKIKWDQKVKISEYAYKISQDRSLSNVPLEN 120

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
              +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ GM+N  + N++GL
Sbjct: 121 GGSYTVKELYEAMAIYSANGATIALVEEIAGKEVDFVKMMNDKSKEFGMKNYKFVNSTGL 180

Query: 183 --------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RI 223
                          D+    +ARD AIL   L ++FP+      I K  ++N       
Sbjct: 181 TNYDLKGHHPEGTTPDEKNKMSARDCAILAKRLVQDFPKILDTAKIPKKTFQNGGKYPID 240

Query: 224 ITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           + N N +L     +   +DG+KTG T  +G     ++      +++VV+   +   R  +
Sbjct: 241 MVNFNMMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKANSHTARFDE 300

Query: 280 ALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
             +L          + ++ H KD++        +   K K    Q K+  +
Sbjct: 301 TKKLYDYGFAN--FEMKKVHGKDSVVKGHETVHVANAKDKDVVVQTKQAVS 349


>gi|296503035|ref|YP_003664735.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
 gi|296324087|gb|ADH07015.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
          Length = 434

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/343 (22%), Positives = 155/343 (45%), Gaps = 36/343 (10%)

Query: 22  IYIQRNIQLMGKI-LFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEP 74
           ++ +R I ++  + +F S+++    +     P       S+I+I+ N  ++   K  DE 
Sbjct: 1   MFCKRVIAIVTVLTIFCSMVVTIGKAAAETDPAIDVEAGSAILIEANSGKILYEKNADES 60

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQ 130
              AS+TKMM+ Y++ E +   KL  + ++ +S+ A      ++ S + L+    +T ++
Sbjct: 61  LAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKE 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN---- 186
              A+   SAN  + A  E I+G E  F  +M++K+K+ GM++  + N++GL +++    
Sbjct: 121 LYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGY 180

Query: 187 ----------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RIITNHNKLL 231
                        +ARD AIL   L ++FPQ      I K  ++        + N N +L
Sbjct: 181 HLEGTTLEEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWML 240

Query: 232 N----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
                +   +DG+KTG T  +G     ++      +++VV+   +   R  +  +L    
Sbjct: 241 KGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYG 300

Query: 288 LEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
                +K+   + KD++        +   K K    Q K+  +
Sbjct: 301 FANFEVKN--VYGKDSVIKGHETVRVANAKEKDVVVQTKQAVS 341


>gi|319767311|ref|YP_004132812.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
           sp. Y412MC52]
 gi|317112177|gb|ADU94669.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
           sp. Y412MC52]
          Length = 460

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 114/259 (44%), Gaps = 16/259 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I+I+ +  ++   K     R  AS+TK+MT  +  E  +     ++  + VS  A 
Sbjct: 112 AKSAILIEQHSGRVLFAKDAYTKRRIASITKIMTAILAIESGK-----MDDTVTVSARAV 166

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S +YL++         +  L+ RS ND + A  E + GS + F  LM+ KA +IGM
Sbjct: 167 RTEGSSIYLRQGEKIKLRDLVYGLMLRSGNDAAVAIAEHVGGSVEGFVFLMNQKAAEIGM 226

Query: 172 QNTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-------RNRI 223
           ++T + N  GL D +N  +TA D A+L     KN  ++ +    + +R          R+
Sbjct: 227 RDTEFANPHGLDDAENHYSTAYDMALLMQYAMKN-KEFRRISGTKVYRAPAPPGEDGARV 285

Query: 224 ITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
             N NKLL        G KTGYT+ +   +VT+       ++AV +  P          E
Sbjct: 286 WRNKNKLLTSLYEYCTGGKTGYTKRAHRTLVTTASKGGIDLIAVTLDAPDDWNDHIAMYE 345

Query: 283 LITSFLEKKTLKHQQTHRK 301
              S      +  ++   K
Sbjct: 346 YGFSHYHIAKVSSERVVDK 364


>gi|261400191|ref|ZP_05986316.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria lactamica ATCC
           23970]
 gi|269210194|gb|EEZ76649.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria lactamica ATCC
           23970]
          Length = 388

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 70/250 (28%), Positives = 137/250 (54%), Gaps = 2/250 (0%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
            + + +       + +VID+   Q    K  D P  PA+L ++MT Y++F+ L+S  +  
Sbjct: 33  AASSPQTPETLAAAHVVIDLQSRQTLSAKNIDAPAEPAALAQLMTAYLVFKNLKSGNIRP 92

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFA 159
              + + ++A     S+++++      T+  +  +I  SAND +      +  GS + F 
Sbjct: 93  EETLKIRESAWKSEGSRMFVRPGGSVRTDTLLKGMIVLSANDAALTLAGRLGNGSIENFV 152

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             M+ +A+++GM+NT+++N +GL  + Q++TARD A+L   L ++FP+YY  FSI+ F++
Sbjct: 153 KQMNEEARRLGMKNTLFRNPTGLSQERQVSTARDLALLAEALMRDFPEYYPLFSIKSFKF 212

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            N    N N LL + +N++G+K G+T + G+N+  S       I+ + +G  +++ R   
Sbjct: 213 ENIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASD 272

Query: 280 ALELITSFLE 289
             +L+   L+
Sbjct: 273 NSKLLNRALQ 282


>gi|251797290|ref|YP_003012021.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           sp. JDR-2]
 gi|247544916|gb|ACT01935.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           sp. JDR-2]
          Length = 425

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 133/291 (45%), Gaps = 32/291 (10%)

Query: 28  IQLMGKILFLSIIMISMASELHAKP---------------------KYSSIVIDVNKNQM 66
           I +M  IL L   +   A E    P                       ++I+ID     +
Sbjct: 8   IAMMFIILVLLAPVPVFAEEALQAPDEEQIEQPADQLAEQLPETPHSEAAILIDAKSGAV 67

Query: 67  TGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTY 125
              K + E  YPAS+TK++T  I+ E     + +    + VSKTA  ++ +++YL E   
Sbjct: 68  LFAKNETERLYPASITKIVTGIIVLE-----QSNPTDIVTVSKTARGEDGTRIYLAEGEQ 122

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
                 I  ++  S ND +TA  E I G++++FA  M+   +K+G+ +T + N SGL D+
Sbjct: 123 KPMLDLIEGMLINSGNDAATAIAEHIDGTKEQFAERMNEFVRKLGLWDTNFVNPSGLPDE 182

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLNKMHNIDGIK 241
           NQ TTARD A +     +N  Q+ +  + +   +          NHNK+L       G+K
Sbjct: 183 NQYTTARDMAKIAQYAMQN-EQFRQVVATKSKPWVGEEWVSKLENHNKMLGSYDGAIGVK 241

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
            G+T+ +G+ +V++ +  D  ++ V++   T     +   +L+       T
Sbjct: 242 NGFTQAAGYTLVSAAQRGDMELIGVILKGATDSGVYKDMTQLLDYGFAHFT 292


>gi|160935972|ref|ZP_02083346.1| hypothetical protein CLOBOL_00869 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441214|gb|EDP18931.1| hypothetical protein CLOBOL_00869 [Clostridium bolteae ATCC
           BAA-613]
          Length = 549

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/293 (27%), Positives = 129/293 (44%), Gaps = 29/293 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP------KYSSIVIDVNKNQMTGFKQ-DEPRY 76
           ++R + L   +   + +    A+     P        + IV+D +   +   K  D+P Y
Sbjct: 6   MKRFLMLFICLCLCAGLFPITAAAAPEWPSDVSIQADAGIVMDSDTGTVLYGKNMDQPYY 65

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGIL 133
           PAS+TK++T  I+ E        LN  +  S           S   + E    T    + 
Sbjct: 66  PASITKILTALIVLEQCD-----LNEMVTFSHDDVYNVEAGSSSAGIDEGDVLTVRDCLY 120

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           AL+  SAN+ + A    +SGS + FA LM+ KA+ +G   + + N SGL+D+N  TTA D
Sbjct: 121 ALMLASANESANALACHVSGSREAFAQLMNEKARSLGCTGSHFNNPSGLNDENHYTTAHD 180

Query: 194 QAILGILLRKNFPQYYKYFSIRKF-------RYRNRIITNHNKLLNK-----MHNIDGIK 241
            A++     +N P++      R +             + NH+K+LNK            K
Sbjct: 181 MALIARAAIQN-PEFLTINGTRSYQLAPTKRTPEGGYVANHHKMLNKNEAVYYPGAFAGK 239

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
           TGYT  +G  +VT  R  D  ++AVV+    S   D KAL     F   ++L+
Sbjct: 240 TGYTSLAGNTLVTCARKNDMTLIAVVLNGHQSHYSDTKAL-FDFGFRNFQSLR 291


>gi|320120306|gb|EFE28569.2| serine-type D-Ala-D-Ala carboxypeptidase [Filifactor alocis ATCC
           35896]
          Length = 443

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 92/337 (27%), Positives = 155/337 (45%), Gaps = 40/337 (11%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYS-----SIVIDVNKNQMTGFKQ-DEPRYPAS 79
           +N+     I F ++ +  + +     P        +++I+    ++   KQ D P YPAS
Sbjct: 9   KNLLFAVIIFFNTVFLHDIHAVATNTPSLGLNCSTAVLIEEETGKILYEKQKDVPVYPAS 68

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
            TK+MT  +  E+L      LN +I V +     + S +YL     FT E+ +  L+ +S
Sbjct: 69  TTKIMTALLTLEHLD-----LNQKITVPEDMGPADGSAMYLLPGETFTVEELLQGLLVKS 123

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AND +    + ISGS ++F+ LM+ +A++IG QNT + N +GLHD N  T+A D A++  
Sbjct: 124 ANDAAILLAKNISGSVEEFSNLMNQRAQEIGCQNTHFVNPNGLHDPNHTTSAYDLALIAR 183

Query: 200 LLRKNFPQYYKYFSI-------RKFRYRNRIITNHNKLLN--------------KMHNID 238
              KN P++ +  S         +     R   N NK L               K   ID
Sbjct: 184 EAMKN-PKFRELVSTDFVQIHATEQTPEIRYFRNTNKFLWSKQTIDYKGISTPIKYDVID 242

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
           GIKTGYT  +G  +V+S       ++AVVM     +     + +L+    +  T   ++ 
Sbjct: 243 GIKTGYTPEAGKCLVSSGEKNGIRLIAVVMKNQGLEV-YANSRKLLDYGFQNFT--KKKI 299

Query: 299 HRKDNLSSTSLKKSLMIKKL----KRTYSQFKKIDAK 331
              + ++ T++    + K L    K  Y   + I++K
Sbjct: 300 FTANEVAGTTVIVDSLEKNLDFYVKEDYYSIENINSK 336


>gi|291532362|emb|CBL05475.1| D-alanyl-D-alanine carboxypeptidase [Megamonas hypermegale ART12/1]
          Length = 376

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 131/305 (42%), Gaps = 19/305 (6%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A  L      ++I+ID    ++   K  D    PAS TKMMT  +  E         +  
Sbjct: 22  ADNLQDMTAQAAILIDATTGRVLYEKNPDAKAMPASTTKMMTCILGLENAND-----DDI 76

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILM 162
           + V K A     S +Y+ E       + + A +  S ND + A   ++  GS + F  +M
Sbjct: 77  VEVDKRAVGVEGSAIYINEGDKIKMSELLQATMLASGNDGAAAIAYYVGKGSLETFVQMM 136

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY--- 219
           ++KAK+IG  NT + N  GL D N  TTARD A +     +N  ++ K  S ++      
Sbjct: 137 NDKAKEIGATNTHFNNPHGLTDPNHYTTARDLAKIARYAYQN-EKFRKIVSTKEQEIQWV 195

Query: 220 ----RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
               R  I  + N+LL    ++ GIKTGYT  +G  +V S +     ++AVV+    S+ 
Sbjct: 196 NPAERKDIYGSTNRLLWNYDDVTGIKTGYTDAAGGCLVASAQKNGITLIAVVLKTSDSRA 255

Query: 276 RDQKALELITSFL----EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
           R  +   L+        E KT+  Q+        +++  K+ +      TY      +  
Sbjct: 256 RFVEGRALLDYGFKHIKEMKTVDEQKLISSIYTHNSTNYKTTVKPVQPFTYLVMDTDNVN 315

Query: 332 AHSTQ 336
             S +
Sbjct: 316 DFSWK 320


>gi|114706870|ref|ZP_01439770.1| Serine-type D-Ala-D-Ala carboxypeptidase [Fulvimarina pelagi
           HTCC2506]
 gi|114537818|gb|EAU40942.1| Serine-type D-Ala-D-Ala carboxypeptidase [Fulvimarina pelagi
           HTCC2506]
          Length = 387

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 66/271 (24%), Positives = 129/271 (47%), Gaps = 15/271 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++ + D    ++   K  D    PASL K+MT+ ++F+ L+   +  +    VS+ A 
Sbjct: 32  APTAFMKDFATGRVLFEKNADMEVEPASLAKLMTIAVVFDELEKGTISRDQTFTVSEDAW 91

Query: 112 -----TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
                    S ++L      + +  +  +I +S ND +    E I+GS   FA +M+ +A
Sbjct: 92  RTGGANSGGSTMFLPLGGEVSVDDLLKGIIIQSGNDATIVIAEGIAGSVDAFADMMNKRA 151

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
           + IG+ ++ + N+SGL   +   T RD   L   L + +P+ Y  F+   +RY      N
Sbjct: 152 QAIGLTHSRFGNSSGLPHPDSHVTMRDLVTLAEHLIREYPEEYPAFAEESYRYNGITQNN 211

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            N LL+     DG+KTG+T+ +G+ +V S       +V  +  M +S ER +++  ++  
Sbjct: 212 RNPLLSL--GADGLKTGHTQAAGYGLVASAEADGRRVVFALSRMASSNERARESQRMMEF 269

Query: 287 F---LEKKTLKHQQTHRKDNLSSTSLKKSLM 314
                E+ TL  +     + +++  ++  ++
Sbjct: 270 GLQDFEEVTLAEE----GETVATVPVRGGVL 296


>gi|288556011|ref|YP_003427946.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudofirmus OF4]
 gi|288547171|gb|ADC51054.1| D-alanyl-D-alanine carboxypeptidase (serine) [Bacillus pseudofirmus
           OF4]
          Length = 382

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/281 (24%), Positives = 130/281 (46%), Gaps = 19/281 (6%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQDEP-RYPA 78
           + +   ++G I FL    I+   E+ A+       ++I+++    ++   K D+     A
Sbjct: 1   MMKKTVVIGLIFFLLSFSIAPQIEVEARNFSVSAEAAIMMEQESGRILYAKNDQTSLRIA 60

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           S+TK+MT  +  E  +     +  Q+ +S  A     S +YL+       E  +  L+ R
Sbjct: 61  SITKIMTALLAIESGK-----MQEQVKISTNAEGTEGSSIYLRAGESMLLEDLVYGLMLR 115

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAIL 197
           S ND + A  E + GS + F  LM+ KA+++GM  T ++N  GL D ++  ++A D A+L
Sbjct: 116 SGNDAAVAIAEHVGGSLEGFVYLMNEKARELGMNQTQFQNPHGLDDHEDHYSSAYDMALL 175

Query: 198 GILLRKNFPQYYKYFSIRKFRYRN---RIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIV 253
                ++ P Y +  S +  R      R+  N N+LL +      G KTG+T+ +   +V
Sbjct: 176 TRYAMES-PLYQEISSAKTHRVDGDQIRVWHNKNRLLTELYEYSTGGKTGFTKRARRTLV 234

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
           ++    D  ++ V +  P+        + L     +  +L+
Sbjct: 235 STASKDDLDLIVVTLNAPSD---WHDHMNLFNWAFDSFSLE 272


>gi|254455195|ref|ZP_05068630.1| D-alanyl-D-alanine carboxypeptidase [Octadecabacter antarcticus
           238]
 gi|198263605|gb|EDY87877.1| D-alanyl-D-alanine carboxypeptidase [Octadecabacter antarcticus
           238]
          Length = 399

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/280 (27%), Positives = 136/280 (48%), Gaps = 15/280 (5%)

Query: 28  IQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           I+ +     L  + I+ A+ + A+       ++ V+D +   +   K  D+P  PAS+ K
Sbjct: 2   IRHIAAPFALFALFIASAAPVGAQTFDTRASAAYVLDHSTGVVLLAKNADDPLPPASMLK 61

Query: 83  MMTLYIIFEYLQSKK-----LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           +MTLY+ FE +         L ++  +PVS+       S ++L        +  +  +I 
Sbjct: 62  LMTLYMAFEAINPLNGQDPFLTVDDVLPVSQHCMDYTGSTMFLDTTDRVRVDDLLRGIIV 121

Query: 138 RSANDVSTAFGEFIS--GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
            S ND S    E +S  G+E  FA  M+ +A+++GM N+ + N++G     Q  + RD  
Sbjct: 122 LSGNDASCVIAEGLSRNGTEAGFAQQMTVRAQQLGMLNSSFANSNGWPAAGQRMSMRDLG 181

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNR---IITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           +L   L  ++P +Y  F+ ++F Y         N N LL+     DG+KTG+T  +G+ +
Sbjct: 182 LLANRLITDYPTFYPLFAEQEFDYDGEHPANTRNRNPLLSLGIGADGLKTGHTIEAGYGL 241

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           V S +  D  I+ VV G  T QER ++A  ++     + T
Sbjct: 242 VGSAKQGDRRIIFVVTGHETVQERAEEAERIVNWAFRQFT 281


>gi|254436605|ref|ZP_05050099.1| D-alanyl-D-alanine carboxypeptidase family [Octadecabacter
           antarcticus 307]
 gi|198252051|gb|EDY76365.1| D-alanyl-D-alanine carboxypeptidase family [Octadecabacter
           antarcticus 307]
          Length = 399

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/261 (30%), Positives = 127/261 (48%), Gaps = 11/261 (4%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKK---- 97
            ++++       ++ V+D +   +   K  D+P  PAS++K+MTLY+ FE +        
Sbjct: 21  PVSAQTFDTRAGAAYVLDHSTGIVLLEKNADDPLPPASMSKLMTLYMAFEAVNPLNGQDP 80

Query: 98  -LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS--GS 154
            L  +  +PVS+       S ++L        E  +  +I  S ND S    E +S  G+
Sbjct: 81  ILTFDDVLPVSQHCMDYTGSTMFLDTTDRVRVEDLVRGIIVLSGNDASCVIAEALSRDGT 140

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           E  FA  M+ +A++IGM N+ + N++G        T RD   L   L  ++P YY  F+ 
Sbjct: 141 EAGFAQQMTERAQQIGMMNSSFANSNGWPAAGNRVTMRDLGTLADRLITDYPTYYPLFAE 200

Query: 215 RKFRYRNR---IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           R+F Y       I N N LL      DG+KTG+TR +GF +V S +  D  I+ VV G+ 
Sbjct: 201 REFDYDGEHLANIRNRNPLLALNIGADGLKTGHTREAGFGLVGSAKQGDRRIIFVVTGIE 260

Query: 272 TSQERDQKALELITSFLEKKT 292
           T+QER  +   ++     + T
Sbjct: 261 TAQERAAETERIVNWAFRQFT 281


>gi|332186127|ref|ZP_08387873.1| D-alanyl-D-alanine carboxypeptidase family protein [Sphingomonas
           sp. S17]
 gi|332013942|gb|EGI56001.1| D-alanyl-D-alanine carboxypeptidase family protein [Sphingomonas
           sp. S17]
          Length = 390

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 66/261 (25%), Positives = 122/261 (46%), Gaps = 15/261 (5%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHL 100
           I+ A E        + + D++   +   +  + R  PAS+ KMMT+Y+ F+ ++  +L L
Sbjct: 22  IAAAPEFQTTAPV-AFMKDLSSGAILFQRDADRRMPPASMAKMMTVYVAFDLIKKGQLKL 80

Query: 101 NTQIPVSKTAAT-----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
           +  + V           Q  S ++L      +    +  ++T S ND      E I+G+E
Sbjct: 81  DDMVTVQPETWAKWHGPQAGSTMFLSPNEQVSVANLLYGIVTLSGNDACVVLAEHIAGTE 140

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKN-QITTARDQAILGILLRKNFPQYYK-YFS 213
           + F   M+  AK+IG+ N+ +  ++G  D      TARD A L     ++FP+ YK ++S
Sbjct: 141 QNFVERMNRTAKQIGLANSHFGTSNGWPDGGVTYVTARDLADLAEHTIQDFPKLYKQFYS 200

Query: 214 IRKFRYRN------RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            R F +            N + LL ++   DG+KTG+T  +G+    S       +V V+
Sbjct: 201 RRDFTWGKTMGGNAITQANRDPLLGRVAGADGLKTGHTEEAGYGFTGSAEQNGRRLVMVM 260

Query: 268 MGMPTSQERDQKALELITSFL 288
            G+ +S  R +++++ +    
Sbjct: 261 AGLTSSNARAEESVKFMNWGF 281


>gi|23097466|ref|NP_690932.1| serine-type D-Ala-D-Ala carboxypeptidase [Oceanobacillus iheyensis
           HTE831]
 gi|22775689|dbj|BAC11967.1| serine-type D-Ala-D-Ala carboxypeptidase [Oceanobacillus iheyensis
           HTE831]
          Length = 447

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 75/345 (21%), Positives = 155/345 (44%), Gaps = 37/345 (10%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEP-RYPA 78
           I + + L    + +   M++  + + A        S+I++D    ++   K  +    PA
Sbjct: 5   INKVLLLAVASILVFTSMLTATTTVQANELDLESESAILVDGETGKVLYAKNPDVALPPA 64

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYFTTEQGILA 134
           S+TKMMT Y+++E +++  +  +T   +S      +A  + S + L+++  +T ++   A
Sbjct: 65  SMTKMMTEYLVWEAIENGDITWDTTTEISDYPYSISANNSFSGVGLRQQQEYTVKELYEA 124

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-------- 186
           +   S N  + A  E I+GSE +F  +M+ K +++G+Q   + N++GL +++        
Sbjct: 125 MAINSDNATTIALAELIAGSESEFVKMMNEKGEEMGLQEFKFVNSTGLDNEDLGDNYPEG 184

Query: 187 ------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL--------- 231
                  + +AR  A+LG  L  ++ +  +  SI +  +  + I N N +L         
Sbjct: 185 TNPNDTNLLSARSAALLGYHLVNDYEEALEISSIPQTDFGGQTINNWNYMLPHEGDNLAS 244

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF---L 288
                +DG+KTG+T  +G++   +       ++ VVM   +  ER ++  +L+       
Sbjct: 245 YYYEGVDGLKTGFTDLAGYSFTGTAERNGQRLITVVMKTGSETERFEETAKLLDYGFSNF 304

Query: 289 EKKTL--KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
           E   L     Q    + +     K+  +   L+ + S   K D K
Sbjct: 305 ENTELFSAGYQEEGHETIPVAKGKEDQVSISLQDSVSVPIKADEK 349


>gi|220931566|ref|YP_002508474.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halothermothrix orenii H
           168]
 gi|219992876|gb|ACL69479.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halothermothrix orenii H
           168]
          Length = 377

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 80/246 (32%), Positives = 123/246 (50%), Gaps = 14/246 (5%)

Query: 63  KNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK 121
             Q+    + +    PAS TK++T  I  E  +     LN  + VS+ AA Q  S ++L+
Sbjct: 45  TGQVLYNHRMNHKLPPASTTKILTTIIAIEEGE-----LNEMVTVSRRAAYQEGSSIWLQ 99

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
           E      E  +  ++  S ND + A  E ISGS KKF+ LM+ +AK+IG  N+ + N SG
Sbjct: 100 EGEKLPLEDLLYGVMLASGNDAAVAVAEHISGSVKKFSELMNKRAKEIGATNSNFLNPSG 159

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLLNKMH 235
           L      +TA D A++     KN   + +  S +           +R + NHNKLL K  
Sbjct: 160 LPQSGHYSTAHDLAMIMRYALKNDI-FARITSTKYKTISWPGKEWDRGLRNHNKLLWKYP 218

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL-ITSFLEKKTLK 294
           +I G KTGYTR +G  +V S +  +  +VAVV+  P      +K L+  + +F + + +K
Sbjct: 219 DITGGKTGYTRAAGRCLVASAKRDNRHVVAVVLNCPNDWVEIRKLLDYGLNNFKKIRYIK 278

Query: 295 HQQTHR 300
             Q  R
Sbjct: 279 KGQVLR 284


>gi|293400812|ref|ZP_06644957.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305838|gb|EFE47082.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 378

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 133/249 (53%), Gaps = 7/249 (2%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A+   S+ +++    ++   K ++   YPAS+TKMM L +IFE L   KL    ++  S 
Sbjct: 24  AQNAKSAYLMEYTSGKVIYAKNEKAKLYPASMTKMMGLLLIFESLHDGKLDWKDEVTTSA 83

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            AA+   S+++L+E    + +  I ++   SAND   A  E + GS + F  +M+ KAKK
Sbjct: 84  YAASMGGSQVFLEENETMSVKDMIKSICIASANDAMVAMAEKVGGSAEHFVEMMNEKAKK 143

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRK----NFPQYYKYFS--IRKFRYRNR 222
           + + NT + N +GLHD    T A+D AI+G  L K    +  +    +   IR+   +  
Sbjct: 144 LNLCNTHFMNPTGLHDPQHYTCAKDMAIVGKALIKEGGDDLLKITSTYDAYIREDSEKAF 203

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + N NKLL +   +DG+K+G+T  +   I  + + KD  ++AVVMG P+S+ R+ +  +
Sbjct: 204 WLVNTNKLLKQYPGVDGLKSGFTSQAMSCITITAKKKDLRLIAVVMGEPSSKVRNGEIKQ 263

Query: 283 LITSFLEKK 291
           ++     + 
Sbjct: 264 MLDYGFSQY 272


>gi|295399022|ref|ZP_06809004.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110372|ref|YP_003988688.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
           sp. Y4.1MC1]
 gi|294978488|gb|EFG54084.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215473|gb|ADP74077.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
           sp. Y4.1MC1]
          Length = 379

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/283 (25%), Positives = 125/283 (44%), Gaps = 15/283 (5%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTL 86
           +  +  +  L   +   A  ++     S+++++ +  ++   K     R  AS+TK+MT 
Sbjct: 8   VLFIVAVAMLFSCIPDQAKAMNEVSAQSAVLMEQHSGRILLEKDAHTKRRIASITKIMTA 67

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            +  E  +     ++  + VS  A     S +YLKE         +  L+ RS ND + A
Sbjct: 68  ILALESGK-----MDDTVTVSARAVRTEGSSIYLKEGEKIKLRDLVYGLMLRSGNDAAVA 122

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLRKNF 205
             E + GS + F +LM+ KA +IGM+NT + N  GL D +N  +TA D A+L     KN 
Sbjct: 123 IAEHVGGSVEGFVVLMNQKAAEIGMRNTEFANPHGLDDAENHYSTAYDMALLMQYAMKN- 181

Query: 206 PQYYKYFSIRKFRYRN------RIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRY 258
            ++ K    + +R  +      R+  N NKLL K      G KTGYT+ +   +VT+   
Sbjct: 182 KEFRKISRTKVYRAPDPEGKSERVWRNKNKLLTKLYEYCTGGKTGYTKRANRTLVTTASK 241

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRK 301
               ++AV +  P          E          +  ++  +K
Sbjct: 242 DGLDLIAVTLDAPDDWNDHIAMYEYGFKHYVIAKVDQKRMIKK 284


>gi|228901076|ref|ZP_04065285.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis IBL 4222]
 gi|228858592|gb|EEN03043.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis IBL 4222]
          Length = 442

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 80/351 (22%), Positives = 155/351 (44%), Gaps = 36/351 (10%)

Query: 14  FLTYPYGSIYIQRNIQLMGKI-LFLSIIMI---SMASELHA--KPKYSSIVIDVNKNQMT 67
                   ++ +R I ++  + LF S+ +    + A  + A      S+I+I+ N  ++ 
Sbjct: 1   MEVTEVKGMFCKRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKIL 60

Query: 68  GFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKE 122
             K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S+ A      ++ S + L+ 
Sbjct: 61  YQKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLEN 120

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
              +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ GM++  + N++GL
Sbjct: 121 GGSYTVKELYEAMAIYSANGATIALVEEIAGKEGNFVKMMNDKSKEFGMKDYKFVNSTGL 180

Query: 183 H--------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RI 223
                          D+    +ARD AIL   L ++FP+      I K  ++        
Sbjct: 181 TNQDLKGYHLEGTTLDEKNKMSARDCAILAQRLIQDFPKILNTAKIPKKTFQEGGKYPID 240

Query: 224 ITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           + N N +L     +   +DG+KTG T  +G     ++      +++VV+   +   R  +
Sbjct: 241 MANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDE 300

Query: 280 ALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
             +L         +K+   + KD++        +   K K    Q K+  +
Sbjct: 301 TKKLYDYGFANFEVKN--VYGKDSVVKGHETVRVANAKEKDVVVQTKQAVS 349


>gi|218897430|ref|YP_002445841.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9842]
 gi|218545638|gb|ACK98032.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9842]
          Length = 437

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 81/346 (23%), Positives = 155/346 (44%), Gaps = 36/346 (10%)

Query: 19  YGSIYIQRNIQLMGKI-LFLSIIMI---SMASELHA--KPKYSSIVIDVNKNQMTGFKQ- 71
              ++ +R I ++  + LF S+ +    + A  + A      S+I+I+ N  ++   K  
Sbjct: 1   MKGMFCKRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKILYQKNA 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           DE    AS+TKMM+ Y++ E +   KL  + ++ +S+ A      ++ S + L+    +T
Sbjct: 61  DESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYT 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---- 183
            ++   A+   SAN  + A  E I+G E  F  +M++K+K+ GM++  + N++GL     
Sbjct: 121 VKELYEAMAIYSANGATIALVEEIAGKEGNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDL 180

Query: 184 ----------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RIITNHN 228
                     D+    +ARD AIL   L ++FPQ      I K  ++        + N N
Sbjct: 181 KGYHLEGTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFN 240

Query: 229 KLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +L     +   +DG+KTG T  +G     ++      +++VV+   +   R  +  +L 
Sbjct: 241 WMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLY 300

Query: 285 TSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
                   +K+   + KD++        +   K K    Q K+  +
Sbjct: 301 DYGFANFEVKN--VYGKDSVVKGHETVRVANAKEKDVVVQTKQAVS 344


>gi|134298966|ref|YP_001112462.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
           MI-1]
 gi|134051666|gb|ABO49637.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
           MI-1]
          Length = 403

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 72/283 (25%), Positives = 142/283 (50%), Gaps = 5/283 (1%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             +++++D +  Q+   K     R  AS+TK+MT+ +I E    +++ ++ ++  S+ A 
Sbjct: 55  AETAVLLDYSSGQVLYDKDMHVARPMASVTKLMTMLLICEAESQERIKMSDKVVASEHAC 114

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S+++L+     T ++ ++++ T SAND S A  EFI+GS++ F  +M+ KAKK+G+
Sbjct: 115 SMGGSQIFLEPGEEMTAKEMLISIATGSANDASVAMAEFIAGSQEAFVSMMNEKAKKMGL 174

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF--RYRNRIITNHNK 229
           +NT + N +GL  +N  T+A D A +     + +P + +  SI ++  R  +  + N NK
Sbjct: 175 KNTHFSNPTGLPIENHYTSAYDMAQVLRECLR-YPLFREVSSIYEYDLRGGDFKLWNTNK 233

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           LL      D  KTG+T  + + +  S +     +V+VV+G P  +   Q+ +++      
Sbjct: 234 LLKWYAGADAGKTGWTNEASYCLAASAKRDSLRLVSVVLGCPMPRTHFQETIKIFNYGFA 293

Query: 290 KKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
           +             +    ++K +M K    T      +  K 
Sbjct: 294 RYK-AVDMAEAGQVVKEIKVEKGMMEKVKVITKDPVGLVVPKG 335


>gi|261403951|ref|YP_003240192.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp.
           Y412MC10]
 gi|261280414|gb|ACX62385.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp.
           Y412MC10]
          Length = 472

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 77/311 (24%), Positives = 146/311 (46%), Gaps = 29/311 (9%)

Query: 55  SSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+++I+ +  Q+      DE   PAS+TKMMT YI+ E ++  +L  +  + V + A   
Sbjct: 83  SAVLIEPSTGQVLLSINADEALPPASMTKMMTEYIVAEKVKQGELAWDDVVTVGENAEKT 142

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L E    T E+  +A+   SAND + A  E ++GSE +F  +M++ AKK+G++ 
Sbjct: 143 VGSRIFLAEGDQHTVEELYIAMAVGSANDATVALAEHVAGSEAEFVTMMNDTAKKMGLKT 202

Query: 174 TIYKNASGLH------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
             + N++GL             DK  + +A D A+L   + ++ P + K+ +I+  ++R 
Sbjct: 203 AFFINSTGLSRADMPEKYRPAEDKETVMSAMDTALLAKYIVEDHPDFAKFTAIQSHKFRP 262

Query: 222 R---IITNHNKLL-----------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           R    I N+N +L                +DG+KTG+T  +G+    +       +++VV
Sbjct: 263 RDTSPIINYNWMLEANKSITNFKAYAYEGLDGLKTGHTNAAGYCFAGTAERDGMRLISVV 322

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKHQQT--HRKDNLSSTSLKKSLMIKKLKRTYSQF 325
           MG  +   R ++  +++    +   +K  Q          +  +KK    +    T    
Sbjct: 323 MGTKSEGARFKETKKVLDYGFDNFEVKEVQAAGATVQGFETVEVKKGKGKEAGLVTDKAL 382

Query: 326 KKIDAKAHSTQ 336
             +  K  S +
Sbjct: 383 TFVVPKGSSGK 393


>gi|229074074|ref|ZP_04207123.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock4-18]
 gi|229094734|ref|ZP_04225742.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-29]
 gi|228688672|gb|EEL42542.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-29]
 gi|228709037|gb|EEL61161.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock4-18]
          Length = 444

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 80/362 (22%), Positives = 158/362 (43%), Gaps = 47/362 (12%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMIS---MASELHAK---PKYSSIVIDVNKNQMTGFKQ-D 72
             ++ +R + L+  +     +++     ++E  A       ++I+++ N  ++   K  D
Sbjct: 7   KGMFCKRFMALVTVLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKILYQKNAD 66

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTT 128
           E    AS+TKMM+ Y++ E +   KL  + +I VS+ A      ++ S + L+    +T 
Sbjct: 67  ELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAHKISQDRSLSNVPLENGGSYTV 126

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------ 182
           ++   A+   SAN  + A GE ++G E  F  +M++KAK++G++N  + N++GL      
Sbjct: 127 KELYEAMAIYSANGATIALGEAVAGKEVNFVKMMNDKAKELGLKNYKFVNSTGLTNKDLK 186

Query: 183 --------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RIITNHNK 229
                    D+    +ARD AIL   L K++P+      I K  ++        + N N 
Sbjct: 187 GQHPEGTTPDEENKMSARDVAILAQHLIKDYPKTLDTAKIPKKVFQEGGKYPINMDNWNW 246

Query: 230 LL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +L     +   +DG+KTG T  +G     ++       ++VV+   +   R  +  +L  
Sbjct: 247 MLKGLVKQYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYD 306

Query: 286 SFLEK----------KTLKHQQTHRKDNLSSTSL---KKSLMIKKLKRTYSQFKKIDAKA 332
                           ++K Q+T R +N     +    K ++   + +      K + K 
Sbjct: 307 YGFANFEMKQMYKKDSSVKGQETVRVENAKDKDVAVQTKQVVSLPVPKGSKDVYKTEFKE 366

Query: 333 HS 334
            S
Sbjct: 367 AS 368


>gi|329930179|ref|ZP_08283792.1| D-alanyl-D-alanine carboxypeptidase DacA [Paenibacillus sp. HGF5]
 gi|328935201|gb|EGG31682.1| D-alanyl-D-alanine carboxypeptidase DacA [Paenibacillus sp. HGF5]
          Length = 472

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 77/311 (24%), Positives = 146/311 (46%), Gaps = 29/311 (9%)

Query: 55  SSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+++I+ +  Q+      DE   PAS+TKMMT YI+ E ++  +L  +  + V + A   
Sbjct: 83  SAVLIEPSTGQVLLSINADEALPPASMTKMMTEYIVAEKVKQGELAWDDVVTVGENAEKT 142

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L E    T E+  +A+   SAND + A  E I+GSE +F  +M++ AKK+G++ 
Sbjct: 143 VGSRIFLAEGDQHTVEELYIAMAVGSANDATVALAEHIAGSEAEFVTMMNDTAKKMGLKT 202

Query: 174 TIYKNASGLH------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
             + N++GL             DK  + +A D A+L   + ++ P + ++ +I+  ++R 
Sbjct: 203 AFFINSTGLSRADMPEKYRPAEDKETVMSAMDTALLAKYIVEDHPDFARFTAIQSHKFRP 262

Query: 222 R---IITNHNKLL-----------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           R    I N+N +L                +DG+KTG+T  +G+    +       +++VV
Sbjct: 263 RDTSPIINYNWMLEANKSITNFKAYAYEGLDGLKTGHTNAAGYCFAGTAERDGMRLISVV 322

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKHQQT--HRKDNLSSTSLKKSLMIKKLKRTYSQF 325
           MG  +   R ++  +++    +   +K  Q          +  +KK    +    T    
Sbjct: 323 MGTKSEGARFKETKKVLDYGFDNFEVKEVQAAGATVQGFETVEVKKGKGKEAGLVTDKAL 382

Query: 326 KKIDAKAHSTQ 336
             +  K  S +
Sbjct: 383 TFVVPKGSSGK 393


>gi|59800884|ref|YP_207596.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae FA 1090]
 gi|240016201|ref|ZP_04722741.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae FA6140]
 gi|240080345|ref|ZP_04724888.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae FA19]
 gi|240112554|ref|ZP_04727044.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae MS11]
 gi|240117582|ref|ZP_04731644.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae PID1]
 gi|240123137|ref|ZP_04736093.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae PID332]
 gi|254493357|ref|ZP_05106528.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae 1291]
 gi|268596491|ref|ZP_06130658.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae FA19]
 gi|268598622|ref|ZP_06132789.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae MS11]
 gi|268603285|ref|ZP_06137452.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID1]
 gi|268681765|ref|ZP_06148627.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID332]
 gi|59717779|gb|AAW89184.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae FA 1090]
 gi|226512397|gb|EEH61742.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae 1291]
 gi|268550279|gb|EEZ45298.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae FA19]
 gi|268582753|gb|EEZ47429.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae MS11]
 gi|268587416|gb|EEZ52092.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID1]
 gi|268622049|gb|EEZ54449.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID332]
          Length = 389

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 145/271 (53%), Gaps = 16/271 (5%)

Query: 35  LFLSIIMISMASELHAKPKYSS--------------IVIDVNKNQMTGFKQ-DEPRYPAS 79
           + L +   + AS    +P   +              IVID+   Q    K  + P  PA+
Sbjct: 13  IILGVSHATAASPAPNRPTVHAAPTLQTPETLTAAHIVIDLQSRQTLSAKNTNTPVEPAA 72

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LT++MT Y++F+ ++S  +     + + ++A     S+++++     +T++ +  +I   
Sbjct: 73  LTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALC 132

Query: 140 ANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           AND +    + +  GS + F   M+ +A+++GM+NT++KN +GL  + Q++TA+D ++L 
Sbjct: 133 ANDAALTLADRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLGREGQVSTAKDLSLLS 192

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             L ++FP+YY  FSI+ F++ N    N N LL + +N++G+K G+T + G+N+  S   
Sbjct: 193 EALMRDFPEYYPLFSIKSFKFENIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSG 252

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLE 289
               I+ + +G  +++ R     +L+   L+
Sbjct: 253 NGRHILVITLGSESAETRASDNSKLLNRALQ 283


>gi|300986937|ref|ZP_07177913.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1]
 gi|300407823|gb|EFJ91361.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1]
 gi|307626443|gb|ADN70747.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli UM146]
 gi|315295235|gb|EFU54570.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
           153-1]
          Length = 321

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 59/216 (27%), Positives = 112/216 (51%), Gaps = 7/216 (3%)

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGILALIT 137
           MT Y++   + S ++  +  + V + A  +        S ++LKE    +       LI 
Sbjct: 1   MTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIV 60

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND   A  ++I+G +++F  +M+N A+K+ +++T ++   GL    Q ++A D A+L
Sbjct: 61  DSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVL 120

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
              +    P++Y  +S +   +      N N LL  K  N+DG+KTG+T  +GFN++ S 
Sbjct: 121 SRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASA 180

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
                 ++AVVMG  +++ R+++A +L+    +  T
Sbjct: 181 VDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFT 216


>gi|262372029|ref|ZP_06065308.1| penicillin-binding protein 6B [Acinetobacter junii SH205]
 gi|262312054|gb|EEY93139.1| penicillin-binding protein 6B [Acinetobacter junii SH205]
          Length = 439

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 71/277 (25%), Positives = 131/277 (47%), Gaps = 16/277 (5%)

Query: 30  LMGKILFLSIIMISMASE--LHAKP----KYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
           ++    F S++ +++A    L   P      +  ++D    Q+         R PASLTK
Sbjct: 4   ILSLFTFFSLLCVNLAHANLLKIAPETVEAQAWSIVDAQSGQIIAEHNSHVQRAPASLTK 63

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSK--TAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           MM  YI  + +++ KL     +  +        + S++YLK     + +Q +  LI  SA
Sbjct: 64  MMVAYIALKEIEAGKLRKEDILTATPVVNTVMWDESQMYLKTGEKISVDQLLAGLIVMSA 123

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND +    E ISGS  +F   M+ +A+ +GM++T + N +G+   +  +TA D  +L   
Sbjct: 124 NDAAVTLAEKISGSVPQFVARMNQEAQALGMKDTHFSNPAGITMPDHYSTAADLGLLAKA 183

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-- 258
           + ++ P+Y  Y  +  F Y  R+    N  L      DG+KTGYT+ +G+N+  +     
Sbjct: 184 IVQDTPEYLYYSKMPSFSYNQRVHHATNLALKMDPTADGLKTGYTKAAGYNLALTAERPT 243

Query: 259 -----KDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                +   ++ +V+G P++ +R + A +L+      
Sbjct: 244 FNPDVEKRRLIVIVLGTPSAVKRAEVAHKLMNLAFTY 280


>gi|239998641|ref|ZP_04718565.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae 35/02]
 gi|240013763|ref|ZP_04720676.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae DGI18]
 gi|240115295|ref|ZP_04729357.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae PID18]
 gi|240120831|ref|ZP_04733793.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae PID24-1]
 gi|240125386|ref|ZP_04738272.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae SK-92-679]
 gi|240127841|ref|ZP_04740502.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae SK-93-1035]
 gi|260440888|ref|ZP_05794704.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
           protein [Neisseria gonorrhoeae DGI2]
 gi|268594495|ref|ZP_06128662.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae 35/02]
 gi|268600975|ref|ZP_06135142.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID18]
 gi|268683987|ref|ZP_06150849.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268686238|ref|ZP_06153100.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268547884|gb|EEZ43302.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae 35/02]
 gi|268585106|gb|EEZ49782.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID18]
 gi|268624271|gb|EEZ56671.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268626522|gb|EEZ58922.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 389

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 145/271 (53%), Gaps = 16/271 (5%)

Query: 35  LFLSIIMISMASELHAKPKYSS--------------IVIDVNKNQMTGFKQ-DEPRYPAS 79
           + L +   + AS    +P   +              IVID+   Q    K  + P  PA+
Sbjct: 13  IILGVSHATAASPAPNRPTVHAAPTLQTPETLTAAHIVIDLQSRQTLSAKNTNTPVEPAA 72

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LT++MT Y++F+ ++S  +     + + ++A     S+++++     +T++ +  +I   
Sbjct: 73  LTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALC 132

Query: 140 ANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           AND +    + +  GS + F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A+L 
Sbjct: 133 ANDAALTLADRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLGREGQVSTAKDLALLS 192

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             L ++FP+YY  FSI+ F++ N    N N LL + +N++G+K G+T + G+N+  S   
Sbjct: 193 EALMRDFPEYYPLFSIKSFKFENIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSG 252

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLE 289
               I+ + +G  +++ R     +L+   L+
Sbjct: 253 NGRHILVITLGSESAETRASDNSKLLNRALQ 283


>gi|261377658|ref|ZP_05982231.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria cinerea ATCC
           14685]
 gi|269145924|gb|EEZ72342.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria cinerea ATCC
           14685]
          Length = 389

 Score =  245 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 70/250 (28%), Positives = 137/250 (54%), Gaps = 2/250 (0%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           I  + +       + IV D+   Q    K  + P  PA+LT++MT Y++F+ L+S  +  
Sbjct: 34  IPSSPQTPETLTAAHIVTDLQSKQTLSAKNINAPVEPAALTQLMTAYLVFKNLKSGNIRP 93

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFA 159
              + + ++A   + S+++++      T+  +  +I  SAND +    + +  GS + F 
Sbjct: 94  EETLKIRESAWKSDGSRMFVRPGNLIRTDDLLKGMIALSANDAALTLADKLGNGSIENFI 153

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             M+ +A+++GM++T++KN +GL  + Q++TARD A+L   L  +FP+YY  FSI+ F++
Sbjct: 154 KQMNEEARRLGMKDTLFKNPTGLSQERQVSTARDLALLSEALILDFPEYYPLFSIKSFKF 213

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           +N    N N LL +   ++G+K G+T + G+N+  S       I+ + +G  +++ R   
Sbjct: 214 KNIEQNNRNILLYRDSGVNGLKAGHTESGGYNLAVSYTGNGRHILVITLGSESAEIRASD 273

Query: 280 ALELITSFLE 289
             +L+   L+
Sbjct: 274 NSKLLNWALQ 283


>gi|304405771|ref|ZP_07387429.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           curdlanolyticus YK9]
 gi|304345014|gb|EFM10850.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           curdlanolyticus YK9]
          Length = 437

 Score =  245 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 83/333 (24%), Positives = 153/333 (45%), Gaps = 36/333 (10%)

Query: 14  FLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYS--------------SIVI 59
            L++  G +       L   +  L++   +  +E  A    +              +I++
Sbjct: 2   KLSFKLGRLRAMTAAGLAVWMFMLALGSTAAFAEGKAADATASAGTGNPLGINAKAAILM 61

Query: 60  DVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPS 116
           +    Q+      DE   PAS+TKMMT YI+ E +++ +L  +T +  S  AAT   + S
Sbjct: 62  EPTTGQVLYELNADEALPPASMTKMMTEYIVLEEIKAGRLTWDTVVSTSAEAATVPPDGS 121

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
           ++YL E    T ++  +A+   SA+D + A    I GS   F   M+  A+K+G+ +  +
Sbjct: 122 QVYLAEGEKHTVKELYIAMAVGSASDATIALAVQIGGSTAGFVDKMNETAQKLGLTSAHF 181

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR---IITNHNKLLNK 233
              SGL ++  + +ARD A L   +  N P++  Y SI ++++R R    + N+N +L  
Sbjct: 182 TGPSGL-EETTVISARDMAKLASTIILNDPEFLTYSSIPRYKFRERDQGELINYNWMLGS 240

Query: 234 -----------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
                         +DG+KTGY   +G+    ++       V+VVM   T Q R ++  +
Sbjct: 241 NKNSEELKSFAYPGVDGMKTGYIGAAGYCFTGTVEVNGLRYVSVVMNTKTKQARFRETAK 300

Query: 283 LIT---SFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           L     +  EKKT+   ++   +++ +  + K 
Sbjct: 301 LYDFGYASFEKKTIVAPKS-EVESVKTVKITKG 332


>gi|297528386|ref|YP_003669661.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. C56-T3]
 gi|297251638|gb|ADI25084.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. C56-T3]
          Length = 452

 Score =  245 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 77/330 (23%), Positives = 142/330 (43%), Gaps = 43/330 (13%)

Query: 28  IQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
             L+   L L+        +  + P      ++I++D    ++   K  D     AS+TK
Sbjct: 10  FWLLSICLCLTFGPFQQTVKAESAPLDIRADAAILVDAQTGRILYEKNIDTVLGIASMTK 69

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           MMT Y++ + +++K++  +     S         +  S + L++   +T  +   A+   
Sbjct: 70  MMTEYLLLDAIKAKRVKWDQMYTPSDYVYRLSQDRALSNVPLRKDGKYTVRELYEAMAIY 129

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN------------ 186
           SAN  + A  E I+GSEK F  +M++KAK++G+++  + NA+GL +K+            
Sbjct: 130 SANGATVAIAEIIAGSEKNFVKMMNDKAKELGLKDYKFVNATGLSNKDLKGFHPEGTSTN 189

Query: 187 --QITTARDQAILGILLRKNFPQYYKYFSI-----RKFRYRNRIITNHNKLL----NKMH 235
              + +AR  A+L   L K+ P+  K  SI     R+       + N N +L        
Sbjct: 190 EENVMSARAMAMLAYRLLKDHPEVLKTASIPHKVFREGTKDEIKMDNWNWMLPGLVYGYE 249

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP------TSQERDQKALELITSFLE 289
            +DG+KTGYT  +G     + +     +++VVM         T + R ++  +L      
Sbjct: 250 GVDGLKTGYTEFAGNCFTGTAKRNGVRLISVVMNAKDASGKTTKEARFKETEKLFNYGFN 309

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLM 314
           + +L     K  Q   K+ L     K   +
Sbjct: 310 QYSLETLYPKGYQLKGKETLPVVKGKDKEV 339


>gi|229051351|ref|ZP_04194858.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH676]
 gi|228722004|gb|EEL73442.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH676]
          Length = 442

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 81/351 (23%), Positives = 155/351 (44%), Gaps = 36/351 (10%)

Query: 14  FLTYPYGSIYIQRNIQLMGKI-LFLSIIMI---SMASELHA--KPKYSSIVIDVNKNQMT 67
                   ++ +R I ++  + LF S+ +    + A  + A      S+I+I+ N  ++ 
Sbjct: 1   MEVTEVKGMFCKRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKIL 60

Query: 68  GFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKE 122
             K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S+ A      ++ S + L+ 
Sbjct: 61  YEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLEN 120

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
              +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ GM++  + N++GL
Sbjct: 121 GGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGL 180

Query: 183 H--------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RI 223
                          D+    +ARD AIL   L ++FPQ      I K  ++        
Sbjct: 181 TNQDLKGYHPEGTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPID 240

Query: 224 ITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           + N N +L     +   +DG+KTG T  +G     ++      +++VV+   +   R  +
Sbjct: 241 MANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDE 300

Query: 280 ALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
             +L         +K+   + KD++        +   K K    Q K+  +
Sbjct: 301 TKKLYDYGFANFEVKN--FYGKDSVIKGYETVRVANAKDKDVVVQTKQAVS 349


>gi|56418545|ref|YP_145863.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus kaustophilus
           HTA426]
 gi|261417510|ref|YP_003251192.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC61]
 gi|319765168|ref|YP_004130669.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC52]
 gi|461913|sp|Q05523|DACA_BACST RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA;
           Short=CPase; Short=DD-carboxypeptidase;
           Short=DD-peptidase; AltName: Full=Penicillin-binding
           protein 5; Short=PBP-5; Flags: Precursor
 gi|580849|emb|CAA48577.1| D-alanine carboxypeptidase [Geobacillus stearothermophilus]
 gi|56378387|dbj|BAD74295.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus kaustophilus
           HTA426]
 gi|261373967|gb|ACX76710.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC61]
 gi|317110034|gb|ADU92526.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC52]
          Length = 452

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 77/330 (23%), Positives = 143/330 (43%), Gaps = 43/330 (13%)

Query: 28  IQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
             L+   L L+        +  + P      ++I++D    ++   K  D     AS+TK
Sbjct: 10  FWLLSICLCLTFGPFQQTVKAESAPLDIRADAAILVDAQTGRILYEKNIDTVLGIASMTK 69

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           MMT Y++ + +++K++  +     S         +  S + L++   +T  +   A+   
Sbjct: 70  MMTEYLLLDAIKAKRVKWDQMYTPSDYVYRLSQDRALSNVPLRKDGKYTVRELYEAMAIY 129

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN------------ 186
           SAN  + A  E I+GSEK F  +M++KAK++G+++  + NA+GL +K+            
Sbjct: 130 SANGATVAIAEIIAGSEKNFVKMMNDKAKELGLKDYKFVNATGLSNKDLKGFHPEGTSTN 189

Query: 187 --QITTARDQAILGILLRKNFPQYYKYFSI-----RKFRYRNRIITNHNKLL----NKMH 235
              + +AR  A+L   L K+ P+  K  SI     R+       + N N +L        
Sbjct: 190 EENVMSARAMAMLAYRLLKDHPEVLKTASIPHKVFREGTKDEIKMDNWNWMLPGLVYGYE 249

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP------TSQERDQKALELITSFLE 289
            +DG+KTGYT  +G     + +     +++VVM         T + R ++  +L      
Sbjct: 250 GVDGLKTGYTEFAGNCFTGTAKRNGVRLISVVMNAKDASGKTTKEARFKETEKLFNYGFN 309

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLM 314
           + +L     K  Q   K+ L     K+  +
Sbjct: 310 QYSLETLYPKGYQLKGKETLPVVKGKEKEV 339


>gi|222148588|ref|YP_002549545.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
           [Agrobacterium vitis S4]
 gi|221735574|gb|ACM36537.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
           [Agrobacterium vitis S4]
          Length = 411

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 64/306 (20%), Positives = 139/306 (45%), Gaps = 20/306 (6%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMASE----------LHAKPKYSSIVIDVNKNQMTG 68
           Y   Y ++ + L+  + + + +  S  ++          ++A      ++I+     +  
Sbjct: 14  YAGSYDRKIVVLLAALFYGASLQTSAFAQAAATDAATPAVYATEAKQVLLIEAETGSVLF 73

Query: 69  FKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS-----KLYLKE 122
            K  D+P   ASL+KMM   ++ + L+S +L L+   PVS+ A     +      ++   
Sbjct: 74  EKNSDQPFTSASLSKMMVAEVVLDALKSGRLTLSQDFPVSEFAWRTGGAPSRTATMFAAV 133

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
           ++    E  +  ++ + AND      E ++GSE+ F  LM+ +A  +G++++ + NA+GL
Sbjct: 134 RSRVPVEALLKGVMVQMANDACLILAEGMAGSEQGFVKLMNERAAALGLKDSHFANATGL 193

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKT 242
            D     + RD   L   L+ N+P +Y  ++   F +      N N+LL +   +DG+  
Sbjct: 194 PDPGNKVSLRDMITLAQALKSNYPDFYALYAQPDFEWNKIFQRNRNRLLGQSPGVDGLAA 253

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL----EKKTLKHQQT 298
           G+    G++IV S +     +   + G  + + R + A + +        +++  +  Q 
Sbjct: 254 GFADGEGYSIVASAQQNGVRLYLGLAGSESDKSRQEDAAKALAWGFSAFEKRRLFEAGQV 313

Query: 299 HRKDNL 304
             + ++
Sbjct: 314 IGEASV 319


>gi|163940275|ref|YP_001645159.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
 gi|163862472|gb|ABY43531.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
          Length = 434

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 77/343 (22%), Positives = 152/343 (44%), Gaps = 36/343 (10%)

Query: 22  IYIQRNIQLMGKILFLSIIMISM----ASELHA--KPKYSSIVIDVNKNQMTGFKQ-DEP 74
           ++ +R I ++  +     + +      A  + A      S+I+++ N  ++   K  DE 
Sbjct: 1   MFCKRFITIVTVLTLFCSMAVPFGRASAETVPAIDVEAGSAILVEANSGKILYQKNADES 60

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQ 130
              AS+TKMM+ Y++ E +   KL  + ++ +S+ A      ++ S + L+    +T ++
Sbjct: 61  LAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAYKISQDRSLSNVPLENGGSYTVKE 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL-------- 182
              A++  SAN  + A  E I+G E  F  +M++K+K+  M+N  + N++GL        
Sbjct: 121 LYEAMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFEMENYKFVNSTGLTNHDLKGH 180

Query: 183 ------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RIITNHNKLL 231
                  D+    +ARD AIL   L ++FP+      I K  ++        +TN N +L
Sbjct: 181 HPEGTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQKGGKYPIDMTNFNWML 240

Query: 232 N----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
                +   +DG+KTG T  +G     ++      +++VV+   +   R  +  +L    
Sbjct: 241 KGLIKQYEGVDGLKTGTTPEAGDCFTGTVEKNGMRLISVVIKANSHTARFDETKKLYDYG 300

Query: 288 LEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
                +K  + + KD++        +   K K    Q K+  +
Sbjct: 301 FANFEVK--KVYGKDSVVKGHETVRVANAKDKDVVVQTKQAVS 341


>gi|212702629|ref|ZP_03310757.1| hypothetical protein DESPIG_00657 [Desulfovibrio piger ATCC 29098]
 gi|212673901|gb|EEB34384.1| hypothetical protein DESPIG_00657 [Desulfovibrio piger ATCC 29098]
          Length = 285

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 78/234 (33%), Positives = 130/234 (55%), Gaps = 3/234 (1%)

Query: 57  IVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           ++I+++  ++           PASLTK+MT+Y++ + ++  +L  NT I V  TA     
Sbjct: 38  VMINLSNGKVLYEHNPNLSIPPASLTKVMTMYVVMDRIKLGRLKRNTSIRVHPTA-RVGG 96

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S + L+ +   T +Q +  +   S ND + A  + ISG+ + F  LM++KA+++GM  T+
Sbjct: 97  SSMRLRPRQKVTVDQLLTGMAVASGNDAAMAISQHISGNSRNFTHLMNHKARQLGMTRTV 156

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           +KN +GL    Q TTARD A L     ++ PQ  +Y S+R FR+  R +   N +L  + 
Sbjct: 157 FKNPTGLPAAGQRTTARDMATLARAYLRSHPQAMRYHSLRSFRFNGRTLGATNTMLG-IP 215

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
            +DG+KTG+T  SG+NI+ + R     ++ VVMG  +   RD  A  LI +  +
Sbjct: 216 GVDGLKTGWTVASGYNIIVTARRGKTRLLVVVMGGRSRAARDMVAHSLIEAGFK 269


>gi|206971703|ref|ZP_03232653.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus AH1134]
 gi|206733688|gb|EDZ50860.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus AH1134]
          Length = 437

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 79/346 (22%), Positives = 153/346 (44%), Gaps = 36/346 (10%)

Query: 19  YGSIYIQRNIQLMGKI-LFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ- 71
              ++  R I ++  + +F S+++    +     P       S+I+I+ N  ++   K  
Sbjct: 1   MKGMFCNRVIAIVTVLTIFCSMVVTIGKAAAETDPAIDVEAGSAILIEANSGKILYEKNA 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           DE    AS+TKMM+ Y++ E +   KL  + ++ +S+ A      ++ S + L+    +T
Sbjct: 61  DESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYT 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---- 183
            ++   A+   SAN  + A  E I+G E  F  +M++K+K+ GM++  + N++GL     
Sbjct: 121 VKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDL 180

Query: 184 ----------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RIITNHN 228
                     D+    +ARD AIL   L ++FPQ      I K  ++        + N N
Sbjct: 181 KGYHLEGTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFN 240

Query: 229 KLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +L     +   +DG+KTG T  +G     ++      +++VV+   +   R  +  +L 
Sbjct: 241 WMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLY 300

Query: 285 TSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
                   +K+   + KD++        +   K K    Q K+  +
Sbjct: 301 DYGFANFEVKN--VYGKDSVIKGHETVRVANAKDKDVVVQTKQAVS 344


>gi|304394240|ref|ZP_07376163.1| serine-type D-Ala-D-Ala carboxypeptidase [Ahrensia sp. R2A130]
 gi|303293680|gb|EFL88057.1| serine-type D-Ala-D-Ala carboxypeptidase [Ahrensia sp. R2A130]
          Length = 412

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 89/290 (30%), Positives = 139/290 (47%), Gaps = 14/290 (4%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL 93
           +    +   +A   HA P  S   +D++  ++   +Q  +  +PASLTK+MT  + F  +
Sbjct: 6   IIAFFLTAWLALPAHALPHIS---VDLDSGRVLSAQQAFDLWHPASLTKLMTALVAFRAI 62

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           +S +L  +  + VS  A    PSK+     T    E  +  L+ +SAND+S A  E +SG
Sbjct: 63  ESGRLTADHPVIVSDNARKAPPSKMGYSRGTTMRLEDALKLLLIKSANDISIALAESVSG 122

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S   F+  M+ +A ++GM  + + N  GLHD+ Q+TTARD AIL  +L K +PQY    S
Sbjct: 123 SVPAFSQAMNAEAARLGMTGSNFVNPHGLHDRRQVTTARDMAILLRVLHKQYPQYKAMLS 182

Query: 214 IRKF----RYRN-----RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
                   R +N     R+  ++N LL +    DG KTG+   SG+N   +       I 
Sbjct: 183 TPSLLAPSRTKNGKTIQRVYYSYNLLLERFRGADGFKTGFVCASGYNFAGAATRSGRRIA 242

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKTLKHQQ-THRKDNLSSTSLKKSL 313
           A+V+G      R   A +LI       T      T  K N +  S  +++
Sbjct: 243 AIVLGRDGQTSRAVDAAKLIEEGFRLPTTTGTPITELKPNGAVPSGPRNM 292


>gi|223928102|gb|ACN23817.1| D-alanyl-D-alanine carboxypeptidase [Clostridium sp. enrichment
           culture clone 7-14]
          Length = 455

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 81/347 (23%), Positives = 138/347 (39%), Gaps = 46/347 (13%)

Query: 22  IYIQRNIQLMGKIL-FLSIIMISMASELHAKP-------KYSSIVIDVNKNQMTGFKQDE 73
           + I+R       +L  +S+  + +A++    P         ++++ID     M   K + 
Sbjct: 1   MKIKRFFAAFLMLLTVVSLSAVPVAADDAVTPVPDPNIQAKAAVLIDAETGTMLYGKNEH 60

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTE 129
              YPASLTK+MT  +  E +   KL L+ +I  S +A      + S   +K     T E
Sbjct: 61  NELYPASLTKIMTALLTLEAVDQGKLSLDQEITASASALNGLAADGSSAGIKVGETMTVE 120

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
             +  ++  SAN+      E +SGS   F   M+ KAK++G QNT + N +GLHD    T
Sbjct: 121 NYLKCMLIVSANEACDVLAEAVSGSVSAFVDAMNAKAKELGCQNTHFVNPNGLHDSQHYT 180

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYR------NRIITNHNKLLNK-------MHN 236
           +A D  ++     K +P++     +             R +   N LL+          +
Sbjct: 181 SAWDLYLITAEALK-YPEFMSICDMGVAEIPASNLSETRRLHTTNYLLSNWRANGYLYSD 239

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP--------TSQERDQKALELITSFL 288
             GIKTG T  +G  +V+S       +++VV+G             +   +   L     
Sbjct: 240 AHGIKTGSTSEAGHCLVSSATKGSRTLISVVLGAERIVGADGVADVQSFSETKRLFLWGF 299

Query: 289 EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           E  + K            T L +  M+  +  T S+   +     S 
Sbjct: 300 ENFSTK------------TVLSELDMLADVPVTLSKIDSVAVHPASA 334


>gi|304387808|ref|ZP_07369982.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Neisseria
           meningitidis ATCC 13091]
 gi|304338073|gb|EFM04209.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Neisseria
           meningitidis ATCC 13091]
          Length = 389

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 77/274 (28%), Positives = 148/274 (54%), Gaps = 14/274 (5%)

Query: 30  LMGKILFLSIIMISMA----SELHAKPKY--------SSIVIDVNKNQMTGFKQ-DEPRY 76
           L+  IL +S    +         HA P          + IVID+   Q    K  + P  
Sbjct: 10  LLSIILGVSHATAASPAPNRPTAHAAPTLQTPETLTAAHIVIDLQSRQTLSAKNINTPVE 69

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PA+LT++MT Y++F+ ++S  +     + + ++A     S+++++     +T++ +  +I
Sbjct: 70  PAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASEGSRMFVRPCDTVSTDKLLKGMI 129

Query: 137 TRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
             SAND +      +  GS + F   M+ +A+++GM+NT++KN +GL  + Q++TA+D A
Sbjct: 130 ALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLA 189

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           +L   L ++FP+YY  FSI+ F+++N    N N LL + +N++G+K G+T + G+N+  S
Sbjct: 190 LLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVS 249

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
                  I+ + +G  +++ R     +L+   L+
Sbjct: 250 YTGNGRHILVITLGSESAEIRASDNSKLLNWALQ 283


>gi|218233929|ref|YP_002364864.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           B4264]
 gi|218161886|gb|ACK61878.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           B4264]
          Length = 438

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 80/362 (22%), Positives = 153/362 (42%), Gaps = 46/362 (12%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMIS---MASELHAK---PKYSSIVIDVNKNQMTGFKQ- 71
              ++ +R I L+  +     I +     ++E  A       ++I+++ N  ++   K  
Sbjct: 1   MKGMFCKRFIALVTVLTLACSIFMPYSNASAETGAALNIEAGAAILVEANSGKILYQKNA 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A       + S + L+    +T
Sbjct: 61  DELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYT 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----- 182
            ++   A+   SAN  + A  E I+G E  F  +M++K+K++G++N  + N++GL     
Sbjct: 121 VKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDL 180

Query: 183 ---------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNK 229
                     D+    +A+D A L   L K++P+      I K  +R       ++N N 
Sbjct: 181 KGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFGMSNWNW 240

Query: 230 LLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +L         +DG+KTG T  +G     ++       ++VV+   +   R  +  +L  
Sbjct: 241 MLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYD 300

Query: 286 SFLEK----------KTLKHQQTHRKDNLSSTSL---KKSLMIKKLKRTYSQFKKIDAKA 332
                           ++K Q+T R +N     +    K  +   + +      K + K 
Sbjct: 301 YGFANFEVKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKDVYKTELKE 360

Query: 333 HS 334
            S
Sbjct: 361 SS 362


>gi|307266908|ref|ZP_07548427.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306918065|gb|EFN48320.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 421

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 81/322 (25%), Positives = 148/322 (45%), Gaps = 27/322 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQDEPR-YPAS 79
           +++ I  +  +  L   +  + + +   P+    +++++D    Q+   K    R YPAS
Sbjct: 1   MKKIIACLLTLFILVAQITPIYANVPPPPEIVGPTAVLMDFTTGQVLYDKNMHKRMYPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
            TK++T  I  E     K +LN  +  S      + + ++L      T EQ + AL+  S
Sbjct: 61  TTKILTAIIAIE-----KGNLNDIVTASDNVTKIDGNSIFLSPGEQLTLEQLLYALLLES 115

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AND + A  E I GS + FA +M+ KAK+IG  ++ + N +GL D+N  +T  D A++  
Sbjct: 116 ANDAAIAIAEHIGGSIENFAKMMNEKAKEIGAYDSHFVNPNGLPDENHYSTPYDMALIAR 175

Query: 200 LLRKNFPQYYKYFSIRKFRYRN-------RIITNHNKLLNK----MHNIDGIKTGYTRNS 248
              +N P++ K  +   ++          R +   N+L+          DG+KTGYT  +
Sbjct: 176 YAMQN-PEFRKIVTTIHYQIPPTNKFDKVRDLWLSNRLIKPSSFHYEGADGVKTGYTVAA 234

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
           G  +V S       +++V+MG   +       ++L+    +  TL  ++T + + ++   
Sbjct: 235 GQVLVASATRDGHRLISVIMGDQGTNI-WTDTIKLLDYGFQNFTLV-KKTEKGEVVTYID 292

Query: 309 LKKS----LMIKKLKRTYSQFK 326
           L KS     +I K    Y   K
Sbjct: 293 LGKSHFKLPLIAKEDFYYEVPK 314


>gi|169831557|ref|YP_001717539.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638401|gb|ACA59907.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 376

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 74/322 (22%), Positives = 130/322 (40%), Gaps = 32/322 (9%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP------------KYSSIVIDVNKNQMTGFKQDE 73
           + +      L + +  +       A+P              +++++DV    +   K + 
Sbjct: 2   KLLARTSLTLLIVVFALLGPQSASAEPSADSTMKPPRVTADAAVLVDVETGHVLFAKNER 61

Query: 74  PR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-PSKLYLKEKTYFTTEQG 131
            R  PASLTK+MT  +  E  +         + VS+ AA     S + L+     T E  
Sbjct: 62  QRKDPASLTKVMTAIVALEAGRPG-----DVVTVSERAARFGRGSVIDLRAGEKITLENL 116

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + A +  SAND + A  E ++G    F   M+ KA+++G  +T + N  G    N  +TA
Sbjct: 117 LKAALIMSANDSTIAIAEHVAGDYDLFVRWMNLKARQLGAHDTRFMNTHGFTHPNHYSTA 176

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLLNKM-HNIDGIKTGY 244
            D A +     +  PQ+      R+         R R I N N+LL      IDG+KTG 
Sbjct: 177 ADLAEITRYALR-IPQFAALVRTREITVYWRDSDRKRTIRNTNRLLRSDFEGIDGVKTGT 235

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNL 304
           T  +G  ++ S       ++AVV+    S  R   A  L+T     + +  +   R D +
Sbjct: 236 TSAAGHCLIASATRDGRRVLAVVL---HSDGRYLDARRLLTYGFALEPV--EVATRGDQI 290

Query: 305 SSTSLKKSLMIKKLKRTYSQFK 326
           +   +++ +    +       +
Sbjct: 291 TRLLVREGVRPDVIVVPAETVR 312


>gi|326389891|ref|ZP_08211455.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325994159|gb|EGD52587.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 421

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 81/322 (25%), Positives = 148/322 (45%), Gaps = 27/322 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQDEPR-YPAS 79
           +++ I  +  +  L   +  + + +   P+    +++++D    Q+   K    R YPAS
Sbjct: 1   MKKIIACLLTLFILVAQITPIYANVPPPPEIVGPTAVLMDFTTGQVLYDKNMHKRMYPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
            TK++T  I  E     K +LN  +  S      + + ++L      T EQ + AL+  S
Sbjct: 61  TTKILTAIIAIE-----KGNLNDIVTASDNVTKIDGNSIFLSPGEQLTLEQLLYALLLES 115

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AND + A  E I GS + FA +M+ KAK+IG  ++ + N +GL D+N  +T  D A++  
Sbjct: 116 ANDAAIAIAEHIGGSIENFAKMMNEKAKEIGAYDSHFVNPNGLPDENHYSTPYDMALIAR 175

Query: 200 LLRKNFPQYYKYFSIRKFRYRN-------RIITNHNKLLNK----MHNIDGIKTGYTRNS 248
              +N P++ K  +   ++          R +   N+L+          DG+KTGYT  +
Sbjct: 176 YAMQN-PEFRKIVTTIHYQIPPTNKFDKVRDLWLSNRLIKPSSFHYEGADGVKTGYTVAA 234

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
           G  +V S       +++V+MG   +       ++L+    +  TL  ++T + + ++   
Sbjct: 235 GQVLVASATRDGHRLISVIMGDQGTNI-WTDTIKLLDYGFQNFTLV-KKTEKGEVVTYID 292

Query: 309 LKKS----LMIKKLKRTYSQFK 326
           L KS     +I K    Y   K
Sbjct: 293 LGKSHFKLPLIAKEDFYYEVPK 314


>gi|196047683|ref|ZP_03114887.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           03BB108]
 gi|225862066|ref|YP_002747444.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           03BB102]
 gi|196021468|gb|EDX60171.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           03BB108]
 gi|225789232|gb|ACO29449.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           03BB102]
          Length = 439

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 79/356 (22%), Positives = 153/356 (42%), Gaps = 48/356 (13%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMASELHAKP------KYSSIVIDVNKNQMTGFKQ- 71
              ++ +R I L+  +  +  +++  ++              ++I+++ N  ++   K  
Sbjct: 1   MKGMFCKRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNA 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           DE    AS+TKMM+ Y++ E +   KL  + ++ VS+ A      ++ S + L+    +T
Sbjct: 61  DELLSIASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAYKISQDRSLSNVPLRNGESYT 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----- 182
            ++   A+   SAN  + A  E I G E  F  LM+NK+K++G++N  + N++GL     
Sbjct: 121 VKELYEAMAIYSANGATIALAEAIGGKEVDFVKLMNNKSKELGLKNYKFVNSTGLTNKDL 180

Query: 183 ---------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHN 228
                     D+     ARD AIL   L ++FP+      I K  +R        + N N
Sbjct: 181 KGQHPEGTNPDEENKMAARDVAILAQRLIQDFPKTLDTAKISKKTFREGTTDRIDMINWN 240

Query: 229 KLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +L         +DG+KTG T  +G     ++       ++VV+   +   R  +  +L 
Sbjct: 241 WMLPGLSKAYDGVDGLKTGSTPEAGECFTGTIEKDGMRFISVVINTKSRDARFDETKKLY 300

Query: 285 TSFLEK----------KTLKHQQTHRKDNLSSTSL----KKSLMIKKLKRTYSQFK 326
                            ++K Q+T R +N     +    K+++ +   K +   +K
Sbjct: 301 DYGFANFEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAVSLPVAKGSKDVYK 356


>gi|77464119|ref|YP_353623.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodobacter
           sphaeroides 2.4.1]
 gi|77388537|gb|ABA79722.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodobacter
           sphaeroides 2.4.1]
          Length = 355

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/239 (31%), Positives = 128/239 (53%), Gaps = 9/239 (3%)

Query: 61  VNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119
           +  + +   K   EP  PAS++K+MTL ++FE L+  ++ + T   VS  A     SK++
Sbjct: 1   MTTHTVLLDKNAHEPLPPASMSKLMTLNMLFEALRDGRVTMETTFAVSTKAKQMGGSKMF 60

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           ++E+   T E+ I  +I  S ND      E ++G+E  FA  M+ +AK +GM ++ + N+
Sbjct: 61  VEERDRPTVEELIHGIIVNSGNDACVVVAEGLNGTESDFARAMTVRAKALGMTDSTFTNS 120

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII---TNHNKLL----N 232
           SG  D     +  D  IL + L + FP++Y YFS  +F Y++R+     N N LL    N
Sbjct: 121 SGWPDPGHRMSVHDLGILAVRLIEEFPEFYPYFSHTEFNYKDRVPSNANNRNPLLRLGPN 180

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSL-RYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                DG+KTG+T+ +G+ +V S  +     IV V+ G+ T  +R Q+  +++     +
Sbjct: 181 GDWTADGLKTGHTQEAGYGLVGSAVQKDGRRIVFVLTGLATEADRAQEGEQIVNWAFRQ 239


>gi|206972675|ref|ZP_03233615.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           AH1134]
 gi|206732395|gb|EDZ49577.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           AH1134]
          Length = 438

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/362 (22%), Positives = 153/362 (42%), Gaps = 46/362 (12%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMIS---MASELHAK---PKYSSIVIDVNKNQMTGFKQ- 71
              ++ +R I L+  +     I +     ++E  A       ++I+++ N  ++   K  
Sbjct: 1   MKGMFCKRFIALVTVLTLACSIFMPYSNASAETGAALNIEAGAAILVEANSGKILYQKNA 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A       + S + L+    +T
Sbjct: 61  DELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYT 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----- 182
            ++   A+   SAN  + A  E I+G E  F  +M++K+K++G++N  + N++GL     
Sbjct: 121 VKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDL 180

Query: 183 ---------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNK 229
                     D+    +A+D A L   L K++P+      I K  +R       ++N N 
Sbjct: 181 KGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNW 240

Query: 230 LLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +L         +DG+KTG T  +G     ++       ++VV+   +   R  +  +L  
Sbjct: 241 MLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYD 300

Query: 286 SFLEK----------KTLKHQQTHRKDNLSSTSL---KKSLMIKKLKRTYSQFKKIDAKA 332
                           ++K Q+T R +N     +    K  +   + +      K + K 
Sbjct: 301 YGFANFEVKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKDVYKTELKE 360

Query: 333 HS 334
            S
Sbjct: 361 SS 362


>gi|118475787|ref|YP_892938.1| D-alanyl-D-alanine carboxypeptidase A [Bacillus thuringiensis str.
           Al Hakam]
 gi|229182408|ref|ZP_04309661.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BGSC 6E1]
 gi|118415012|gb|ABK83431.1| D-Ala-D-Ala carboxypeptidase A, Serine peptidase, MEROPS family S11
           [Bacillus thuringiensis str. Al Hakam]
 gi|228601054|gb|EEK58621.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BGSC 6E1]
          Length = 444

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 79/355 (22%), Positives = 153/355 (43%), Gaps = 48/355 (13%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMISMASELHAKP------KYSSIVIDVNKNQMTGFKQ-D 72
             ++ +R I L+  +  +  +++  ++              ++I+++ N  ++   K  D
Sbjct: 7   KGMFCKRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNAD 66

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTT 128
           E    AS+TKMM+ Y++ E +   KL  + ++ VS+ A      ++ S + L+    +T 
Sbjct: 67  ELLSIASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAYKISQDRSLSNVPLRNGESYTV 126

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------ 182
           ++   A+   SAN  + A  E I G E  F  LM+NK+K++G++N  + N++GL      
Sbjct: 127 KELYEAMAIYSANGATIALAEAIGGKEVDFVKLMNNKSKELGLKNYKFVNSTGLTNKDLK 186

Query: 183 --------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNK 229
                    D+     ARD AIL   L ++FP+      I K  +R        + N N 
Sbjct: 187 GQHPEGTNPDEENKMAARDVAILAQRLIQDFPKTLDTAKISKKTFREGTTDRIDMINWNW 246

Query: 230 LL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +L         +DG+KTG T  +G     ++       ++VV+   +   R  +  +L  
Sbjct: 247 MLPGLSKAYDGVDGLKTGSTPEAGECFTGTIEKDGMRFISVVINTKSRDARFDETKKLYD 306

Query: 286 SFLEK----------KTLKHQQTHRKDNLSSTSL----KKSLMIKKLKRTYSQFK 326
                           ++K Q+T R +N     +    K+++ +   K +   +K
Sbjct: 307 YGFANFEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAVSLPVAKGSKDVYK 361


>gi|229089145|ref|ZP_04220429.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-42]
 gi|228694186|gb|EEL47865.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-42]
          Length = 444

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 79/355 (22%), Positives = 153/355 (43%), Gaps = 48/355 (13%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMISMASELHAKP------KYSSIVIDVNKNQMTGFKQ-D 72
             ++ +R I L+  +  +  +++  ++              ++I+++ N  ++   K  D
Sbjct: 7   KGMFCKRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNAD 66

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTT 128
           E    AS+TKMM+ Y++ E +   KL  + ++ VS+ A      ++ S + L+    +T 
Sbjct: 67  ELLSIASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAYKISQDRSLSNVPLRNGESYTV 126

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------ 182
           ++   A+   SAN  + A  E I G E  F  LM+NK+K++G++N  + N++GL      
Sbjct: 127 KELYEAMAIYSANGATIALAEAIGGKEVDFVKLMNNKSKELGLKNYKFVNSTGLTNKDLK 186

Query: 183 --------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNK 229
                    D+     ARD AIL   L ++FP+      I K  +R        + N N 
Sbjct: 187 GRHPEGTNPDEENKMAARDVAILAQRLIQDFPKTLDTAKISKKTFREGTTDRIDMINWNW 246

Query: 230 LL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +L         +DG+KTG T  +G     ++       ++VV+   +   R  +  +L  
Sbjct: 247 MLPGLSKAYDGVDGLKTGSTPEAGECFTGTIEKDGMRFISVVINTKSRDARFDETKKLYD 306

Query: 286 SFLEK----------KTLKHQQTHRKDNLSSTSL----KKSLMIKKLKRTYSQFK 326
                           ++K Q+T R +N     +    K+++ +   K +   +K
Sbjct: 307 YGFANFEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAVSLPVAKGSKDVYK 361


>gi|163938022|ref|YP_001642906.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
 gi|163860219|gb|ABY41278.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
          Length = 435

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 81/353 (22%), Positives = 156/353 (44%), Gaps = 49/353 (13%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAK-------PKYSSIVIDVNKNQMTGFKQ-DE 73
           ++ +R I L+  +L L+  M +  S   A+          ++I+++ N  ++   K  DE
Sbjct: 1   MFCKRFIALV-TVLTLAFGMFAPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNADE 59

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTE 129
               AS+TKMM+ Y++ E +   KL  + +I VS+ A       + S + L+    +T +
Sbjct: 60  LLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKISQDASLSNVALENGGLYTVK 119

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------- 182
           +   A+   SAN  + A  E I+G E  F  +M++KAK++G++N  + N++GL       
Sbjct: 120 ELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKAKELGLKNYKFVNSTGLTNKDLKG 179

Query: 183 -------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNKLL 231
                   D+    +A+D A L   L K++P+      I K  +R       ++N N +L
Sbjct: 180 MHPEGTTPDEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKVFRPEKEKFGMSNWNWML 239

Query: 232 NK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
                    +DG+KTG T  +G     ++       ++VV+   +   R  +  +L    
Sbjct: 240 KGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYG 299

Query: 288 LEK----------KTLKHQQTHRKDNLSSTSL----KKSLMIKKLKRTYSQFK 326
                         ++K ++T R +N     +    K+++ +   K +   +K
Sbjct: 300 FANFEMKKMYEKGSSVKGKETVRVENAKDKDVVVQTKQAVSLPVPKGSKDVYK 352


>gi|194018065|ref|ZP_03056670.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus pumilus ATCC
           7061]
 gi|194010257|gb|EDW19834.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus pumilus ATCC
           7061]
          Length = 441

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 151/342 (44%), Gaps = 43/342 (12%)

Query: 29  QLMGKILFLSIIMISMASELHAKPK--------YSSIVIDVNKNQMTGFKQDEPRYP-AS 79
           QLM  IL L++I+ +      AK           ++I+I+ +  ++   K  E R P AS
Sbjct: 8   QLMVSILALALIVTAFTPMSKAKAAEDPFNVNAKAAILIEASTGKILYSKNAEQRLPIAS 67

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIP----VSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           + KMMT Y++ E +   K+  +        V + +  ++ S + L++   +T ++   A 
Sbjct: 68  MAKMMTEYLLLEAIAEGKVKWDQTYTPDDYVYEISQDRSLSNVPLRKDGSYTVKELYQAT 127

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------------- 182
              SAN  +    E I+GSE KF   M+ KAK++G+ N  + NA+GL             
Sbjct: 128 AIYSANAAAIGLAEVIAGSESKFVEKMNAKAKELGLTNYKFVNATGLENKDLHGKQPKGT 187

Query: 183 -HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNK--- 233
             D+    +A+D A+L   L K+ P+  +  SI K ++R        + N N +L     
Sbjct: 188 GPDEESEVSAKDMALLAQHLIKDHPEILETSSIAKTKFREGTDDEMDMPNWNFMLKGLVK 247

Query: 234 -MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS--QERDQKALELITSFLEK 290
               +DG+KTG T ++G +   + +  D  ++AV++    +    R   A +L     + 
Sbjct: 248 EYKGVDGLKTGSTDSAGSSFTGTAKQGDMRVIAVILNAKGNLHTARFDVAKKLFDYAFKN 307

Query: 291 KTLKH-----QQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
            T+K      QQ    +N+     K   +    K  +S   K
Sbjct: 308 FTMKEMYKKGQQIKGHENIEVDKGKDKEVPVVTKEAFSVPVK 349


>gi|255021081|ref|ZP_05293134.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC
           51756]
 gi|254969495|gb|EET27004.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC
           51756]
          Length = 299

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/277 (27%), Positives = 125/277 (45%), Gaps = 21/277 (7%)

Query: 35  LFLSIIMISMA-------------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASL 80
           L LS++  +M              + L      + I+++    Q+   K     Y  AS+
Sbjct: 7   LLLSLVACAMLLHSTSARAQNIVQAGLPVIDARAYILMNAETGQILATKHAYRPYAIASI 66

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           TK+MTLY++F+ LQS  L L  Q      A     S + L+    FT  Q IL +   S 
Sbjct: 67  TKLMTLYLLFQDLQSGHLSLQQQFKPCPAALHTGGSTMDLRAGVPFTVAQMILGMTVPSG 126

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND +      +SGS   F   M+  A+++GM +T + +  GL   N   +  D A+L   
Sbjct: 127 NDAAVEAAHLVSGSVPAFVRKMNRTARQLGMLSTQFYDPDGLPHPNNTASPYDIALLTRA 186

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           +   FPQY  +F    F Y      N N L+ ++  I G+K+GYT  +G  +V +     
Sbjct: 187 IMTQFPQYMPFFQHEHFTYGGITYPNPNLLVGRVPFITGMKSGYTDAAGHCLVATGTQDG 246

Query: 261 DPIVAVVMGMPTSQERDQ-------KALELITSFLEK 290
             ++AVV+G+P+  +  +       ++L+L+     +
Sbjct: 247 VKLIAVVLGVPSFHDEARGFWKASWQSLKLLDWGFAR 283


>gi|228918964|ref|ZP_04082345.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228840679|gb|EEM85939.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 443

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/361 (22%), Positives = 153/361 (42%), Gaps = 46/361 (12%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMIS---MASELHAK---PKYSSIVIDVNKNQMTGFKQ-D 72
             ++ +R I L+  +     I +     ++E  A       ++I+++ N  ++   K  D
Sbjct: 7   KGMFCKRFIALVTVLTLACSIFMPYSNASAETGAALNIEAGAAILVEANSGKILYQKNAD 66

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTT 128
           E    AS+TKMM+ Y++ E +   KL  + +I VS+ A       + S + L+    +T 
Sbjct: 67  ELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTV 126

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------ 182
           ++   A+   SAN  + A  E I+G E  F  +M++K+K++G++N  + N++GL      
Sbjct: 127 KELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLK 186

Query: 183 --------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNKL 230
                    D+    +A+D A L   L K++P+      I K  +R       ++N N +
Sbjct: 187 GMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWM 246

Query: 231 LNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L         +DG+KTG T  +G     ++       ++VV+   +   R  +  +L   
Sbjct: 247 LKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDY 306

Query: 287 FLEK----------KTLKHQQTHRKDNLSSTSL---KKSLMIKKLKRTYSQFKKIDAKAH 333
                          ++K Q+T R +N     +    K  +   + +      K + K  
Sbjct: 307 GFANFEVKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKDVYKTELKES 366

Query: 334 S 334
           S
Sbjct: 367 S 367


>gi|254744208|ref|ZP_05201889.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. Kruger B]
          Length = 438

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 77/362 (21%), Positives = 154/362 (42%), Gaps = 46/362 (12%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMASELHAKP------KYSSIVIDVNKNQMTGFKQ- 71
              ++ +R I L+  +  +  +++  ++              ++I+++ N  ++   K  
Sbjct: 1   MKGMFCKRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNA 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A       + S + L+    +T
Sbjct: 61  DELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYT 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----- 182
            ++   A+   SAN  + A  E I+G E  F  +M++K+K++G++N  + N++GL     
Sbjct: 121 VKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDL 180

Query: 183 ---------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNK 229
                     D+    +A+D A L   L K++P+      I K  +R       ++N N 
Sbjct: 181 KGMHPEGXXADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNW 240

Query: 230 LLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +L         +DG+KTG T  +G     ++       ++VV+   +   R  +  +L  
Sbjct: 241 MLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYD 300

Query: 286 SFLEK----------KTLKHQQTHRKDNLSSTSL---KKSLMIKKLKRTYSQFKKIDAKA 332
                           ++K Q+T R +N     +    K  +   + +   +  K + K 
Sbjct: 301 YGFANFEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKEVYKTELKE 360

Query: 333 HS 334
            S
Sbjct: 361 SS 362


>gi|42781103|ref|NP_978350.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           ATCC 10987]
 gi|217959457|ref|YP_002338009.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH187]
 gi|229138682|ref|ZP_04267264.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           BDRD-ST26]
 gi|42737024|gb|AAS40958.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           ATCC 10987]
 gi|217066480|gb|ACJ80730.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH187]
 gi|228644801|gb|EEL01051.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           BDRD-ST26]
 gi|324326015|gb|ADY21275.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 317

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 133/258 (51%), Gaps = 16/258 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E+ AK   ++++ID +   +      +E   PAS++KMMT Y++ E + + K+    
Sbjct: 59  IPPEIDAK---AAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM
Sbjct: 116 PVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLM 175

Query: 163 SNKAKKIGM-QNTIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           + KAK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 176 NAKAKQLKMSEHAKFANASGLQEPDGSETKMTAGDVANLAYHLIKDYPEILEVTHLRQSQ 235

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         IDG+KTG+T ++G+    + +  D  I+ VVMG 
Sbjct: 236 LAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGT 295

Query: 271 PTSQERDQKALELITSFL 288
               +R  +  +L++   
Sbjct: 296 KGKTKRFTETNKLMSYAF 313


>gi|49478184|ref|YP_034369.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
           carboxypeptidase) [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49329740|gb|AAT60386.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
           carboxypeptidase) [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 438

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 79/362 (21%), Positives = 155/362 (42%), Gaps = 46/362 (12%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMIS---MASELHAK---PKYSSIVIDVNKNQMTGFKQ- 71
              ++ +R I L+  +     +++     ++E  A       ++I+++ N  ++   K  
Sbjct: 1   MKGMFCKRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKILYQKNA 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A       + S + L+    +T
Sbjct: 61  DELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYT 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----- 182
            ++   A+   SAN  + A  E I+G E  F  +M++K+K++G++N  + N++GL     
Sbjct: 121 VKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDL 180

Query: 183 ---------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNK 229
                     D+    +A+D A L   L K++P+      I K  +R       ++N N 
Sbjct: 181 KGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNW 240

Query: 230 LLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +L         +DG+KTG T  +G     ++       ++VV+   +   R  +  +L  
Sbjct: 241 MLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYD 300

Query: 286 SFLEK----------KTLKHQQTHRKDNLSSTSL---KKSLMIKKLKRTYSQFKKIDAKA 332
                           ++K Q+T R +N     +    K  +   + +   +  K + K 
Sbjct: 301 YGFANFEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKEVYKTELKE 360

Query: 333 HS 334
            S
Sbjct: 361 SS 362


>gi|222095601|ref|YP_002529658.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1]
 gi|221239659|gb|ACM12369.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1]
          Length = 317

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 133/258 (51%), Gaps = 16/258 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E+ AK   ++++ID +   +      +E   PAS++KMMT Y++ E + + K+    
Sbjct: 59  IPPEIDAK---AAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM
Sbjct: 116 PVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLM 175

Query: 163 SNKAKKIGM-QNTIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           + KAK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 176 NAKAKQLKMSEHAKFANASGLQEPDGSETKMTAGDVANLAYHLIKDYPEILEVTHLRQSQ 235

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         IDG+KTG+T ++G+    + +  D  I+ VVMG 
Sbjct: 236 LAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGT 295

Query: 271 PTSQERDQKALELITSFL 288
               +R  +  +L++   
Sbjct: 296 KGKTKRFTETNKLMSYAF 313


>gi|229165003|ref|ZP_04292801.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH621]
 gi|228618455|gb|EEK75482.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH621]
          Length = 443

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 80/355 (22%), Positives = 156/355 (43%), Gaps = 49/355 (13%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMISMASELHAK-------PKYSSIVIDVNKNQMTGFKQ- 71
             ++ +R I L+  +L L+  + +  S   A+          ++I+++ N  ++   K  
Sbjct: 7   KGMFCKRFIALV-TVLTLAFGVFAPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNA 65

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A       + S + L+    +T
Sbjct: 66  DELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKISQDASLSNVALENGGLYT 125

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----- 182
            ++   A+   SAN  + A  E I+G E  F  +M++KAK++G++N  + N++GL     
Sbjct: 126 VKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKAKELGLKNYKFVNSTGLTNKDL 185

Query: 183 ---------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNK 229
                     D+    +A+D A L   L K++P+      I K  +R       ++N N 
Sbjct: 186 KGMHPEGTTPDEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKVFRPEKEKFGMSNWNW 245

Query: 230 LLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +L         +DG+KTG T  +G     ++       ++VV+   +   R  +  +L  
Sbjct: 246 MLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYD 305

Query: 286 SFLEK----------KTLKHQQTHRKDNLSSTSL----KKSLMIKKLKRTYSQFK 326
                           ++K ++T R +N     +    K+++ +   K +   +K
Sbjct: 306 YGFANFEMKKMYEKGSSVKGKETVRVENAKDKDVAVQTKQAVSLPVPKGSKDVYK 360


>gi|169632783|ref|YP_001706519.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein
           [Acinetobacter baumannii SDF]
 gi|169151575|emb|CAP00352.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein
           [Acinetobacter baumannii]
          Length = 439

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 74/272 (27%), Positives = 129/272 (47%), Gaps = 16/272 (5%)

Query: 30  LMGKILFLSIIMISM--ASELHAKP----KYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
            +      SI   ++  A+ L+  P      +  ++D    Q+         R PASLTK
Sbjct: 4   FLSLFTLFSIFCTTLTNAALLNIAPESVEAAAWTIVDTQSGQIIAEHNSHVQRAPASLTK 63

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSK--TAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           MM  YI  + +++ KL LN  I  +   +    + S++YLK     + +Q +  LI  SA
Sbjct: 64  MMVAYIALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIVMSA 123

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND +    E ISG    F   M+ +A+ +GM++T + N +G+   +  TTA D ++L   
Sbjct: 124 NDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPAGITMPDHYTTAHDLSLLSQA 183

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-- 258
           +    P+Y  Y  +  F Y  R     N  L    ++DG+KTGYT+ +G+N+  +     
Sbjct: 184 VIHQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTQAAGYNLALTASRPS 243

Query: 259 -----KDDPIVAVVMGMPTSQERDQKALELIT 285
                    ++ +V+G P++ +R + A +L+ 
Sbjct: 244 FSPNLPQRRLLVIVLGTPSAVKRAEIADKLMN 275


>gi|157691298|ref|YP_001485760.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus
           SAFR-032]
 gi|157680056|gb|ABV61200.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus
           SAFR-032]
          Length = 441

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 151/342 (44%), Gaps = 43/342 (12%)

Query: 29  QLMGKILFLSIIMISMASELHAKPK--------YSSIVIDVNKNQMTGFKQDEPRYP-AS 79
           QLM  IL L++I+ +      AK           ++I+I+ +  ++   K  E R P AS
Sbjct: 8   QLMVSILALALIVTAFTPMSKAKAAEDPFNVNAKAAILIEASTGKILYSKNAEQRLPIAS 67

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIP----VSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           + KMMT Y++ E +   K+  +        V + +  ++ S + L++   +T ++   A 
Sbjct: 68  MAKMMTEYLLLEAIAEGKVKWDQTYTPDDYVYEISQDRSLSNVPLRKDGSYTVKELYQAT 127

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------------- 182
              SAN  +    E I+GSE KF   M+ KAK++G+ N  + NA+GL             
Sbjct: 128 AIYSANAAAIGLAEVIAGSESKFVEKMNAKAKELGLTNYKFVNATGLENKDLHGKQPKGT 187

Query: 183 -HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNK--- 233
             D+    +A+D A+L   L K+ P+  +  SI K ++R        + N N +L     
Sbjct: 188 GTDEESEVSAKDMALLAQHLIKDHPEILETSSIAKTKFREGTDDEMDMPNWNFMLKGLVK 247

Query: 234 -MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS--QERDQKALELITSFLEK 290
               +DG+KTG T ++G +   + +  D  ++AV++    +    R   A +L     + 
Sbjct: 248 EYEGVDGLKTGSTDSAGSSFTGTAKQGDMRVIAVILNAKGNLHTARFDVAKKLFDYAFKN 307

Query: 291 KTLKH-----QQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
            T+K      QQ    +N+     K   +    K  +S   K
Sbjct: 308 FTMKEMYKKGQQIKGHENIEVDKGKDKEVPVVTKEAFSVPVK 349


>gi|49183048|ref|YP_026300.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
           Sterne]
 gi|165873233|ref|ZP_02217844.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A0488]
 gi|167635043|ref|ZP_02393360.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A0442]
 gi|167641737|ref|ZP_02399980.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A0193]
 gi|170688916|ref|ZP_02880118.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A0465]
 gi|170707518|ref|ZP_02897971.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A0389]
 gi|177655678|ref|ZP_02937003.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A0174]
 gi|190569327|ref|ZP_03022219.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           Tsiankovskii-I]
 gi|196036362|ref|ZP_03103759.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus W]
 gi|218901215|ref|YP_002449049.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           AH820]
 gi|227812687|ref|YP_002812696.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. CDC 684]
 gi|254686602|ref|ZP_05150461.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. CNEVA-9066]
 gi|254724155|ref|ZP_05185940.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A1055]
 gi|254737010|ref|ZP_05194715.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. Western North America USA6153]
 gi|254755970|ref|ZP_05208002.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. Vollum]
 gi|254761669|ref|ZP_05213687.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. Australia 94]
 gi|49176975|gb|AAT52351.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
           Sterne]
 gi|164711031|gb|EDR16597.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A0488]
 gi|167510291|gb|EDR85694.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A0193]
 gi|167529517|gb|EDR92267.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A0442]
 gi|170127514|gb|EDS96388.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A0389]
 gi|170667140|gb|EDT17901.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A0465]
 gi|172080018|gb|EDT65118.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A0174]
 gi|190559549|gb|EDV13542.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           Tsiankovskii-I]
 gi|195990992|gb|EDX54963.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus W]
 gi|218539949|gb|ACK92347.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           AH820]
 gi|227002528|gb|ACP12271.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. CDC 684]
          Length = 438

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 77/362 (21%), Positives = 154/362 (42%), Gaps = 46/362 (12%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMASELHAKP------KYSSIVIDVNKNQMTGFKQ- 71
              ++ +R I L+  +  +  +++  ++              ++I+++ N  ++   K  
Sbjct: 1   MKGMFCKRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNA 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A       + S + L+    +T
Sbjct: 61  DELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYT 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----- 182
            ++   A+   SAN  + A  E I+G E  F  +M++K+K++G++N  + N++GL     
Sbjct: 121 VKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDL 180

Query: 183 ---------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNK 229
                     D+    +A+D A L   L K++P+      I K  +R       ++N N 
Sbjct: 181 KGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNW 240

Query: 230 LLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +L         +DG+KTG T  +G     ++       ++VV+   +   R  +  +L  
Sbjct: 241 MLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYD 300

Query: 286 SFLEK----------KTLKHQQTHRKDNLSSTSL---KKSLMIKKLKRTYSQFKKIDAKA 332
                           ++K Q+T R +N     +    K  +   + +   +  K + K 
Sbjct: 301 YGFANFEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKEVYKTELKE 360

Query: 333 HS 334
            S
Sbjct: 361 SS 362


>gi|228912752|ref|ZP_04076401.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228846879|gb|EEM91882.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 443

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 79/361 (21%), Positives = 155/361 (42%), Gaps = 46/361 (12%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMIS---MASELHAK---PKYSSIVIDVNKNQMTGFKQ-D 72
             ++ +R I L+  +     +++     ++E  A       ++I+++ N  ++   K  D
Sbjct: 7   KGMFCKRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKILYQKNAD 66

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTT 128
           E    AS+TKMM+ Y++ E +   KL  + +I VS+ A       + S + L+    +T 
Sbjct: 67  ELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTV 126

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------ 182
           ++   A+   SAN  + A  E I+G E  F  +M++K+K++G++N  + N++GL      
Sbjct: 127 KELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLK 186

Query: 183 --------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNKL 230
                    D+    +A+D A L   L K++P+      I K  +R       ++N N +
Sbjct: 187 GMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWM 246

Query: 231 LNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L         +DG+KTG T  +G     ++       ++VV+   +   R  +  +L   
Sbjct: 247 LKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDY 306

Query: 287 FLEK----------KTLKHQQTHRKDNLSSTSL---KKSLMIKKLKRTYSQFKKIDAKAH 333
                          ++K Q+T R +N     +    K  +   + +   +  K + K  
Sbjct: 307 GFANFEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKEVYKTELKES 366

Query: 334 S 334
           S
Sbjct: 367 S 367


>gi|260549669|ref|ZP_05823886.1| penicillin-binding protein 6B [Acinetobacter sp. RUH2624]
 gi|260407186|gb|EEX00662.1| penicillin-binding protein 6B [Acinetobacter sp. RUH2624]
          Length = 439

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 74/272 (27%), Positives = 129/272 (47%), Gaps = 16/272 (5%)

Query: 30  LMGKILFLSIIMISM--ASELHAKP----KYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
            +      SI   ++  A+ L+  P      +  ++D    Q+         R PASLTK
Sbjct: 4   FLSLFTLFSIFCTTLTNAALLNIAPESVEAAAWTIVDTQSGQIIAEHNSHVQRAPASLTK 63

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSK--TAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           MM  YI  + +++ KL LN  I  +   +    + S++YLK     + +Q +  LI  SA
Sbjct: 64  MMVAYIALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIVMSA 123

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND +    E ISG    F   M+ +A+ +GM++T + N +G+   +  TTA D ++L   
Sbjct: 124 NDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPAGITMPDHYTTAHDLSLLSQA 183

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-- 258
           +    P+Y  Y  +  F Y  R     N  L    ++DG+KTGYT+ +G+N+  +     
Sbjct: 184 VIHQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTASRPS 243

Query: 259 -----KDDPIVAVVMGMPTSQERDQKALELIT 285
                    ++ +V+G P++ +R + A +L+ 
Sbjct: 244 FSPNLPQRRLLVIVLGTPSAVKRAEIADKLMN 275


>gi|148553407|ref|YP_001260989.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingomonas wittichii
           RW1]
 gi|148498597|gb|ABQ66851.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingomonas wittichii
           RW1]
          Length = 392

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 68/279 (24%), Positives = 125/279 (44%), Gaps = 15/279 (5%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKM 83
           +  I L+  +  ++ I    A+     P   + + D++   +   K  +    PAS+ KM
Sbjct: 3   RSKIALLSAVFLMAAIPAEAAAPPFDTPAPVAFLKDLSSGAILYAKNPDLRMPPASMAKM 62

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-----NPSKLYLKEKTYFTTEQGILALITR 138
           MT+Y+ F+ +Q  +L L+    V      Q       S ++L      +    +  ++T 
Sbjct: 63  MTVYVAFDLIQKGELKLDAMATVRPETWKQWHGPAAGSTMFLSPGEQVSVANLLFGIVTL 122

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-QITTARDQAIL 197
           S ND      E ISG+E+ F  LM+ +AK++G+ N+ +  ++G  D      TARD A L
Sbjct: 123 SGNDACVVLAEHISGTEQAFVALMNRRAKEMGLTNSHFGTSNGWPDGGATYVTARDLATL 182

Query: 198 GILLRKNFPQYYK-YFSIRKFRYR-------NRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
                +  P+ YK ++S   F +        +    N + LL ++   DG+KTG+T  +G
Sbjct: 183 AEKTIEEHPKLYKTFYSRPSFTWGKTMGGGQDITQANRDPLLGRVAGADGLKTGHTEEAG 242

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           F    S       +V V+ G+ +  +R  +++  +    
Sbjct: 243 FGFTGSAEQNGRRLVMVLSGLTSFNQRIDQSVSFMNWGF 281


>gi|56961794|ref|YP_173516.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16]
 gi|56908028|dbj|BAD62555.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16]
          Length = 429

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 129/291 (44%), Gaps = 28/291 (9%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           +  +  + F+   +   +++       ++IV++ +  Q+   +  DE    AS+TKMMT 
Sbjct: 1   MAALAMLAFVLGPIKPASAQSLTVDASAAIVVNADTGQILFEQNSDEQLAIASMTKMMTE 60

Query: 87  YIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           YI+ E + +  +    ++ ++      +  +  S + L++   +T +    ++   SAN 
Sbjct: 61  YIVLESIANGDISWEDEVTITDHLLPLSHQRELSNVPLRQDYTYTVKDLYESMAIYSANA 120

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HDKNQI 188
            + A  E ++G+E +F   M+ KA+++G++   + NASGL               D    
Sbjct: 121 STMALAEHVAGTEAQFVAKMNEKAEELGLEKYEFINASGLNNADLQGEHPEGTPADGETT 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLLNK----MHNIDG 239
            +AR  A L   L K+FP+     S+ +  +         + N N +L         +DG
Sbjct: 181 LSARSVAQLAYHLLKDFPEVLDTASVPEAVFDSGPDEKIDMQNWNWMLPNSPHYYEGVDG 240

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +KTGYT  +G +   +       ++ VVMG  T  +R  +  +L+     +
Sbjct: 241 LKTGYTDAAGNSFTATAERDGVRLITVVMGTDTRDDRFNETKKLLDYGFSQ 291


>gi|218895150|ref|YP_002443561.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           G9842]
 gi|218543092|gb|ACK95486.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           G9842]
          Length = 438

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 81/362 (22%), Positives = 153/362 (42%), Gaps = 46/362 (12%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMIS---MASELHAK---PKYSSIVIDVNKNQMTGFKQ- 71
              ++ +R I L+  I     I +     ++E  A       ++I+++ N  ++   K  
Sbjct: 1   MKGMFCKRFIALVTVITLACSIFMPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNA 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A       + S + L+    +T
Sbjct: 61  DELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYT 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----- 182
            ++   A+   SAN  + A  E I+G E  F  +M++K+K++G++N  + N++GL     
Sbjct: 121 VKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDL 180

Query: 183 ---------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNK 229
                     D+    +A+D A L   L K++P+      I K  +R       ++N N 
Sbjct: 181 KGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNW 240

Query: 230 LLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +L         +DG+KTG T  +G     ++       ++VV+   +   R  +  +L  
Sbjct: 241 MLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYD 300

Query: 286 SFLEK----------KTLKHQQTHRKDNLSSTSL---KKSLMIKKLKRTYSQFKKIDAKA 332
                           ++K Q+T R +N     +    K  +   + +      K + K 
Sbjct: 301 YGFANFEVKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKDVYKTELKE 360

Query: 333 HS 334
            S
Sbjct: 361 SS 362


>gi|169795133|ref|YP_001712926.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein
           [Acinetobacter baumannii AYE]
 gi|213158204|ref|YP_002320255.1| D-ala-D-ala-carboxypeptidase penicillin-binding protein
           [Acinetobacter baumannii AB0057]
 gi|215482680|ref|YP_002324876.1| Penicillin-binding protein 6B precursor [Acinetobacter baumannii
           AB307-0294]
 gi|301345223|ref|ZP_07225964.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii AB056]
 gi|301511561|ref|ZP_07236798.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii AB058]
 gi|301596993|ref|ZP_07242001.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii AB059]
 gi|332853987|ref|ZP_08435103.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6013150]
 gi|332869733|ref|ZP_08438921.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6013113]
 gi|169148060|emb|CAM85923.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein
           [Acinetobacter baumannii AYE]
 gi|193077983|gb|ABO12897.2| putative D-ala-D-ala-carboxypeptidase penicillin-binding protein
           [Acinetobacter baumannii ATCC 17978]
 gi|213057364|gb|ACJ42266.1| D-ala-D-ala-carboxypeptidase penicillin-binding protein
           [Acinetobacter baumannii AB0057]
 gi|213986927|gb|ACJ57226.1| Penicillin-binding protein 6B precursor [Acinetobacter baumannii
           AB307-0294]
 gi|332728269|gb|EGJ59651.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6013150]
 gi|332732635|gb|EGJ63868.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6013113]
          Length = 439

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 74/272 (27%), Positives = 129/272 (47%), Gaps = 16/272 (5%)

Query: 30  LMGKILFLSIIMISM--ASELHAKP----KYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
            +      SI   ++  A+ L+  P      +  ++D    Q+         R PASLTK
Sbjct: 4   FLSLFTLFSIFCTTLTNAALLNIAPESVEAAAWTIVDTQSGQIIAEHNSHVQRAPASLTK 63

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSK--TAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           MM  YI  + +++ KL LN  I  +   +    + S++YLK     + +Q +  LI  SA
Sbjct: 64  MMVAYIALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIVMSA 123

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND +    E ISG    F   M+ +A+ +GM++T + N +G+   +  TTA D ++L   
Sbjct: 124 NDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPAGITMPDHYTTAHDLSLLSQA 183

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-- 258
           +    P+Y  Y  +  F Y  R     N  L    ++DG+KTGYT+ +G+N+  +     
Sbjct: 184 VIHQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTASRPS 243

Query: 259 -----KDDPIVAVVMGMPTSQERDQKALELIT 285
                    ++ +V+G P++ +R + A +L+ 
Sbjct: 244 FSPNLPQRRLLVIVLGTPSAVKRAEIADKLMN 275


>gi|239501103|ref|ZP_04660413.1| Penicillin-binding protein 6B precursor [Acinetobacter baumannii
           AB900]
          Length = 439

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 74/272 (27%), Positives = 129/272 (47%), Gaps = 16/272 (5%)

Query: 30  LMGKILFLSIIMISM--ASELHAKP----KYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
            +      SI   ++  A+ L+  P      +  ++D    Q+         R PASLTK
Sbjct: 4   FLSLFTLFSIFCTTLTNAALLNIAPESVEAAAWTIVDTQSGQIIAEHNSHVQRAPASLTK 63

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSK--TAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           MM  YI  + +++ KL LN  I  +   +    + S++YLK     + +Q +  LI  SA
Sbjct: 64  MMVAYIALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIVMSA 123

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND +    E ISG    F   M+ +A+ +GM++T + N +G+   +  TTA D ++L   
Sbjct: 124 NDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPAGITMPDHYTTAHDLSLLSQA 183

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-- 258
           +    P+Y  Y  +  F Y  R     N  L    ++DG+KTGYT+ +G+N+  +     
Sbjct: 184 VIHQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTASRPS 243

Query: 259 -----KDDPIVAVVMGMPTSQERDQKALELIT 285
                    ++ +V+G P++ +R + A +L+ 
Sbjct: 244 FSPNLPQRRLLVIVLGTPSAVKRAEIADKLMN 275


>gi|228925267|ref|ZP_04088365.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228931516|ref|ZP_04094424.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|229119676|ref|ZP_04248939.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus 95/8201]
 gi|228663767|gb|EEL19344.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus 95/8201]
 gi|228828134|gb|EEM73860.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228834381|gb|EEM79920.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 443

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 77/361 (21%), Positives = 154/361 (42%), Gaps = 46/361 (12%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMISMASELHAKP------KYSSIVIDVNKNQMTGFKQ-D 72
             ++ +R I L+  +  +  +++  ++              ++I+++ N  ++   K  D
Sbjct: 7   KGMFCKRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNAD 66

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTT 128
           E    AS+TKMM+ Y++ E +   KL  + +I VS+ A       + S + L+    +T 
Sbjct: 67  ELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTV 126

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------ 182
           ++   A+   SAN  + A  E I+G E  F  +M++K+K++G++N  + N++GL      
Sbjct: 127 KELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLK 186

Query: 183 --------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNKL 230
                    D+    +A+D A L   L K++P+      I K  +R       ++N N +
Sbjct: 187 GMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWM 246

Query: 231 LNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L         +DG+KTG T  +G     ++       ++VV+   +   R  +  +L   
Sbjct: 247 LKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDY 306

Query: 287 FLEK----------KTLKHQQTHRKDNLSSTSL---KKSLMIKKLKRTYSQFKKIDAKAH 333
                          ++K Q+T R +N     +    K  +   + +   +  K + K  
Sbjct: 307 GFANFEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKEVYKTELKES 366

Query: 334 S 334
           S
Sbjct: 367 S 367


>gi|188584694|ref|YP_001916239.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349381|gb|ACB83651.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 416

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 81/284 (28%), Positives = 143/284 (50%), Gaps = 29/284 (10%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKY------------SSIVIDVNKNQMTGFKQDEP 74
           N +++  ++FL +I     S++ AK  Y            ++++++    ++   ++   
Sbjct: 8   NKKVIITLIFLLMINTFTVSDVTAKQLYPQEFETPEIEAETAVLMEFESGKVLYDQEMHR 67

Query: 75  -RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
             +PAS TK+MT  ++ E        L  Q+ VS+ A   + S +YL      TT   + 
Sbjct: 68  QMHPASTTKIMTALLLIE-----NASLREQVVVSENAFGTDGSSMYLNLDEKITTRDLLY 122

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+ RSAND + A  E+++GS + FA +M+++AK++G +NT +KN  GL ++N  TTA D
Sbjct: 123 GLMVRSANDAAVAIAEYVAGSVENFADMMNSRAKELGAKNTNFKNPHGLTEENHKTTAYD 182

Query: 194 QAILGILLRKNFPQYYKYFSIRKFR-------YRNRIITNHNKLLNKMHNIDGIKTGYTR 246
             ++     KN P++    S R+           +R++ N N+LL       G+KTGYTR
Sbjct: 183 LGVIAREALKN-PKFRSVASTRRITLDWPEEEDEDRLLVNRNELLADYPGALGVKTGYTR 241

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQER-DQKALELITSFLE 289
           ++    V +       ++AVV+   TS+ R  + A EL+    E
Sbjct: 242 SANQTFVAAAERDGMTLIAVVL--STSRNRLFEDAKELLDFGFE 283


>gi|228963111|ref|ZP_04124282.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228796567|gb|EEM44004.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 443

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 81/361 (22%), Positives = 153/361 (42%), Gaps = 46/361 (12%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMIS---MASELHAK---PKYSSIVIDVNKNQMTGFKQ-D 72
             ++ +R I L+  I     I +     ++E  A       ++I+++ N  ++   K  D
Sbjct: 7   KGMFCKRFIALVTVITLACSIFMPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNAD 66

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTT 128
           E    AS+TKMM+ Y++ E +   KL  + +I VS+ A       + S + L+    +T 
Sbjct: 67  ELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTV 126

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------ 182
           ++   A+   SAN  + A  E I+G E  F  +M++K+K++G++N  + N++GL      
Sbjct: 127 KELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLK 186

Query: 183 --------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNKL 230
                    D+    +A+D A L   L K++P+      I K  +R       ++N N +
Sbjct: 187 GMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWM 246

Query: 231 LNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L         +DG+KTG T  +G     ++       ++VV+   +   R  +  +L   
Sbjct: 247 LKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDY 306

Query: 287 FLEK----------KTLKHQQTHRKDNLSSTSL---KKSLMIKKLKRTYSQFKKIDAKAH 333
                          ++K Q+T R +N     +    K  +   + +      K + K  
Sbjct: 307 GFANFEVKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKDVYKTELKES 366

Query: 334 S 334
           S
Sbjct: 367 S 367


>gi|196041942|ref|ZP_03109229.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           NVH0597-99]
 gi|196027197|gb|EDX65817.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           NVH0597-99]
          Length = 438

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 77/362 (21%), Positives = 154/362 (42%), Gaps = 46/362 (12%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMASELHAKP------KYSSIVIDVNKNQMTGFKQ- 71
              ++ +R I L+  +  +  +++  ++              ++I+++ N  ++   K  
Sbjct: 1   MKDMFCKRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNA 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A       + S + L+    +T
Sbjct: 61  DELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYT 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----- 182
            ++   A+   SAN  + A  E I+G E  F  +M++K+K++G++N  + N++GL     
Sbjct: 121 VKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDL 180

Query: 183 ---------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNK 229
                     D+    +A+D A L   L K++P+      I K  +R       ++N N 
Sbjct: 181 KGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNW 240

Query: 230 LLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +L         +DG+KTG T  +G     ++       ++VV+   +   R  +  +L  
Sbjct: 241 MLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYD 300

Query: 286 SFLEK----------KTLKHQQTHRKDNLSSTSL---KKSLMIKKLKRTYSQFKKIDAKA 332
                           ++K Q+T R +N     +    K  +   + +   +  K + K 
Sbjct: 301 YGFANFEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKEVYKTELKE 360

Query: 333 HS 334
            S
Sbjct: 361 SS 362


>gi|219669686|ref|YP_002460121.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
           hafniense DCB-2]
 gi|219539946|gb|ACL21685.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
           hafniense DCB-2]
          Length = 379

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 125/291 (42%), Gaps = 17/291 (5%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           + +   A    +++++D     +   K     R PAS TK++T  +  E  +      + 
Sbjct: 36  IPTSSLAITADAAVLMDGATGDILYDKNAHKQRPPASTTKILTAILGLELGKP-----DE 90

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + VS+ AA    S ++L         + +   + +S ND   A  E I+G+E+ F  LM
Sbjct: 91  LVVVSEKAAAVGESTIHLDPGEKILLYELVTGAMVKSGNDACVAIAEQIAGTEEDFVRLM 150

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
           + KA  +G +NT ++N +GL  KN ++TA D A++     +  P +     +++      
Sbjct: 151 NQKAFLLGAKNTHFENTNGLPSKNHVSTAYDLALMARYGLQ-IPAFTSITRLKETEIHFI 209

Query: 223 I------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
                  + N NKLL      DG+KTG T  +G  +V +       ++AVV+  P   +R
Sbjct: 210 EPDFFMNLRNTNKLLWNYPYTDGVKTGTTTAAGKCLVAAATKDGRQLIAVVLHAP---DR 266

Query: 277 DQKALELITSFL-EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
              A +L+     E +TL + Q        + + +      +     S  K
Sbjct: 267 FGDAQKLLEWGFNETETLNYVQAGETIEFPAENSEPIKAFAQNPIQISILK 317


>gi|260556621|ref|ZP_05828839.1| penicillin-binding protein 6B [Acinetobacter baumannii ATCC 19606]
 gi|260409880|gb|EEX03180.1| penicillin-binding protein 6B [Acinetobacter baumannii ATCC 19606]
          Length = 439

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 74/272 (27%), Positives = 129/272 (47%), Gaps = 16/272 (5%)

Query: 30  LMGKILFLSIIMISM--ASELHAKP----KYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
            +      SI   ++  A+ L+  P      +  ++D    Q+         R PASLTK
Sbjct: 4   FLSLFTLFSIFCTTLTNAALLNIAPESVEAAAWTIVDTQSGQIIAEHNSHVQRAPASLTK 63

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSK--TAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           MM  YI  + +++ KL LN  I  +   +    + S++YLK     + +Q +  LI  SA
Sbjct: 64  MMVAYIALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIVMSA 123

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND +    E ISG    F   M+ +A+ +GM++T + N +G+   +  TTA D ++L   
Sbjct: 124 NDAAVTLAEKISGDVPHFVKRMNQEAQALGMKDTHFSNPAGITMPDHYTTAHDLSLLSQA 183

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-- 258
           +    P+Y  Y  +  F Y  R     N  L    ++DG+KTGYT+ +G+N+  +     
Sbjct: 184 VIHQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTASRPS 243

Query: 259 -----KDDPIVAVVMGMPTSQERDQKALELIT 285
                    ++ +V+G P++ +R + A +L+ 
Sbjct: 244 FSPNLPQRRLLVIVLGTPSAVKRAEIADKLMN 275


>gi|229150211|ref|ZP_04278433.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus m1550]
 gi|228633330|gb|EEK89937.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus m1550]
          Length = 317

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 137/258 (53%), Gaps = 16/258 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E++AK   ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+    
Sbjct: 59  IPPEINAK---AAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM
Sbjct: 116 PVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNAAVALAEHMAKSEKDFVQLM 175

Query: 163 SNKAKKIGM-QNTIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             KAK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 176 DAKAKQLKMSEHAKFANASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLRQSQ 235

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         IDG+KTG+T ++G+    + +  D+ I+ VVMG 
Sbjct: 236 LAFNNINVISTNDMLNKNNKSLYIEGIDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGT 295

Query: 271 PTSQERDQKALELITSFL 288
            +  +R  +  +L++   
Sbjct: 296 SSKTKRFTETNKLMSYAF 313


>gi|212637859|ref|YP_002314379.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus
           WK1]
 gi|212559339|gb|ACJ32394.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus
           WK1]
          Length = 447

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 71/360 (19%), Positives = 147/360 (40%), Gaps = 53/360 (14%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKY------SSIVIDVNKNQMTGFKQ-DEPRYPASLT 81
             +  I+ +   M+++  +  A+         ++I+++    ++   K  D     AS+T
Sbjct: 12  SFIISIVAMFSFMMTLPQQTKAEEDVLNIEADAAILVEAETGKILYQKNIDAVLGIASMT 71

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALIT 137
           KMMT Y++ E +   ++  + +  VS+        ++ S + L++   +T  +   A+  
Sbjct: 72  KMMTEYLLLEAIHEGRVKWDQEYTVSEYVYQISQKRDLSNVPLRKDGKYTVRELYEAMAI 131

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------H 183
            SAN  + A  E + GSE  F  +M+ KA+++G+++  + NA+GL               
Sbjct: 132 YSANGATVAIAEIVGGSETNFVKMMNEKAQELGLKDYKFVNATGLNNKDLGGLHPAGSGD 191

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RIITNHNKLLNK----M 234
           ++  + +AR  A L   L   FP+  +  SI +  +R        + N N +L       
Sbjct: 192 NEENVMSARAVATLAYHLYHEFPEILETASIPRKYFREGTDDQIKMDNWNWMLPGLVAAY 251

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ-----ERDQKALELITSFLE 289
             +DGIKTGYT  +G+    +        + VVM   T+       R ++  +++     
Sbjct: 252 EGVDGIKTGYTEFAGYCFTGTAERNGMRFITVVMNAKTNGKGTYLSRFEQTRKMLDYAFS 311

Query: 290 KKTLKH--------------QQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
             T++                    K+   + + K+ L +   +    ++K +      T
Sbjct: 312 NYTVQKLYPKGYTTKKHKTVTVKKGKEKEVAIATKQPLSLVIKRGEEKKYKPVVVIEKET 371


>gi|218235920|ref|YP_002367173.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus B4264]
 gi|218163877|gb|ACK63869.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus B4264]
          Length = 437

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 80/346 (23%), Positives = 155/346 (44%), Gaps = 36/346 (10%)

Query: 19  YGSIYIQRNIQLMGKI-LFLSIIMI---SMASELHA--KPKYSSIVIDVNKNQMTGFKQ- 71
              ++ +R I ++  + LF S+ +    + A  + A      S+I+I+ N  ++   K  
Sbjct: 1   MKGMFCKRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKILYEKNA 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           DE    AS+TKMM+ Y++ E +   KL  + ++ +S+ A      ++ S + L+    +T
Sbjct: 61  DESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYT 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---- 183
            ++   A+   SAN  + A  E I+G E  F  +M++K+K+ GM++  + N++GL     
Sbjct: 121 VKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDL 180

Query: 184 ----------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RIITNHN 228
                     D+    +ARD AIL   L ++FP+      I K  ++        + N N
Sbjct: 181 KGYHPEGTTLDEKNKMSARDCAILAQRLIQDFPKILNTAKIPKKIFQEGGKYPIDMANFN 240

Query: 229 KLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +L     +   +DG+KTG T  +G     ++      +++VV+   +   R  +  +L 
Sbjct: 241 WMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLY 300

Query: 285 TSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
                   +K+   + KD++        +   K K    Q K+  +
Sbjct: 301 DYGFANFEVKN--FYGKDSVIKGYETVRVANAKDKDVVVQTKQAVS 344


>gi|228943820|ref|ZP_04106207.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228815844|gb|EEM62078.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 443

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 77/361 (21%), Positives = 154/361 (42%), Gaps = 46/361 (12%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMISMASELHAKP------KYSSIVIDVNKNQMTGFKQ-D 72
             ++ +R I L+  +  +  +++  ++              ++I+++ N  ++   K  D
Sbjct: 7   KGMFCKRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNAD 66

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTT 128
           E    AS+TKMM+ Y++ E +   KL  + +I VS+ A       + S + L+    +T 
Sbjct: 67  ELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTV 126

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------ 182
           ++   A+   SAN  + A  E I+G E  F  +M++K+K++G++N  + N++GL      
Sbjct: 127 KELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLK 186

Query: 183 --------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNKL 230
                    D+    +A+D A L   L K++P+      I K  +R       ++N N +
Sbjct: 187 GMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWM 246

Query: 231 LNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L         +DG+KTG T  +G     ++       ++VV+   +   R  +  +L   
Sbjct: 247 LKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDY 306

Query: 287 FLEK----------KTLKHQQTHRKDNLSSTSL---KKSLMIKKLKRTYSQFKKIDAKAH 333
                          ++K Q+T R +N     +    K  +   + +   +  K + K  
Sbjct: 307 GFANFEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKEVYKTELKES 366

Query: 334 S 334
           S
Sbjct: 367 S 367


>gi|229112950|ref|ZP_04242457.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock1-15]
 gi|228670493|gb|EEL25829.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock1-15]
          Length = 442

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 80/351 (22%), Positives = 155/351 (44%), Gaps = 36/351 (10%)

Query: 14  FLTYPYGSIYIQRNIQLMGKI-LFLSIIMI---SMASELHA--KPKYSSIVIDVNKNQMT 67
                   ++ +R I ++  + LF S+ +    + A  + A      S+I+I+ N  ++ 
Sbjct: 1   MEVTEVKGMFCKRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKIL 60

Query: 68  GFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKE 122
             K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S+ A      ++ S + L+ 
Sbjct: 61  YEKSADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLEN 120

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
              +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ GM++  + N++GL
Sbjct: 121 GGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGL 180

Query: 183 H--------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RI 223
                          D+    +ARD AIL   L ++FP+      I K  ++        
Sbjct: 181 TNQDLKGYHSEGTTLDEKNKMSARDCAILAQRLIQDFPKILNTAKIPKKTFQEGGKYPID 240

Query: 224 ITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           + N N +L     +   +DG+KTG T  +G     ++      +++VV+   +   R  +
Sbjct: 241 MANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDE 300

Query: 280 ALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
             +L         +K+   + KD++        +   K K    Q K+  +
Sbjct: 301 TKKLYDYGFANFEVKN--FYGKDSVIKGYETVRVANAKDKDVVVQTKQAVS 349


>gi|160931733|ref|ZP_02079127.1| hypothetical protein CLOLEP_00565 [Clostridium leptum DSM 753]
 gi|156869378|gb|EDO62750.1| hypothetical protein CLOLEP_00565 [Clostridium leptum DSM 753]
          Length = 382

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 126/245 (51%), Gaps = 4/245 (1%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+++++ +  ++   K   E R  AS+TK+MTL ++ E +   ++ L   I  S+ A+
Sbjct: 35  APSAVLMEASTGKVLFEKNSHEVRACASITKVMTLLLVMEAIDQGRMSLTDTITASEHAS 94

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S ++L+     + +  + A +  SAND + A  E + G+E+ F   M+ +A ++GM
Sbjct: 95  SMGGSDIWLEPGETMSADDMVKATVVASANDAAVALAEHLEGTEEAFVQKMNQRAAELGM 154

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIITNHNK 229
           ++T++KN +GL ++  +T+A D A++   L K   + + Y +I     R     I N NK
Sbjct: 155 KDTVFKNCNGLDEEGHVTSAYDVALMSRELIK-HEKIFDYTTIWMDTLREGKTQIVNTNK 213

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           LL   + I G+KTG T  +G  I  + +     ++ VV+G  T +ER   A  L+     
Sbjct: 214 LLKSYNGITGLKTGTTGGAGSCITATAQRDGLSLIGVVLGSATGKERFTDAAALLDYGFS 273

Query: 290 KKTLK 294
              + 
Sbjct: 274 NYMIY 278


>gi|226312616|ref|YP_002772510.1| peptidase S11 family protein precursor [Brevibacillus brevis NBRC
           100599]
 gi|226095564|dbj|BAH44006.1| peptidase S11 family protein precursor [Brevibacillus brevis NBRC
           100599]
          Length = 406

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 140/307 (45%), Gaps = 24/307 (7%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASELHAKPK-----YSSIVIDVNKNQMTGFKQD-EPRY 76
           ++  N+ ++  +LF   +  + A E  +         S+I+ID    Q+   K   E  Y
Sbjct: 3   FLLTNLLVVVMVLFNLGMPSAFAEESSSLEPNTLIGQSAILIDATTGQVLFEKNPHEKLY 62

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+ T     E     K +L+  + VSK A  +  +++YL+E    T    +  L+
Sbjct: 63  PASITKIATGIYAIE-----KGNLDDTVTVSKKARREEGTRVYLEEGEKITLRNLLYGLL 117

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKK-IGMQNTIYKNASGLHDKNQITTARDQA 195
             S ND  TA  E +S + ++FA+ ++   K+ +G+  T + N  GLHD N  TTA D A
Sbjct: 118 MNSGNDAGTAIAEHMSQTTERFAVDLNAYLKEKVGVTETNFANPHGLHDPNHYTTAADMA 177

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRII----TNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            +     KN P + +    ++  +  +       NHNKLL +     GIK G+T  +   
Sbjct: 178 KISRYAMKN-PVFREIVGTKRLPWHGQTWETVLVNHNKLLREYEGATGIKNGFTDQAMHT 236

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKDNLSSTS 308
           +V S +  +  ++AV M   TS    +   +L+       E K +      + D+ S  +
Sbjct: 237 LVGSAKRGETELIAVTMKASTSANAYKDIKKLLDFGFQGFETKFIAK----KGDSFSEVA 292

Query: 309 LKKSLMI 315
           +  +  +
Sbjct: 293 VPGNTSV 299


>gi|239825594|ref|YP_002948218.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70]
 gi|239805887|gb|ACS22952.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70]
          Length = 450

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 128/285 (44%), Gaps = 33/285 (11%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
            AS+       ++I++D N  ++   K  D     AS+TKMMT Y++ E ++ K++  + 
Sbjct: 29  AASDPLNIEADAAILVDANTGRILYQKNIDTVLGIASMTKMMTEYLLLEAIKEKRVKWDQ 88

Query: 103 QIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
           Q   S         ++ S + L++   +T  +   A+   SAN  + A  E + GSE+ F
Sbjct: 89  QYTPSDYVYRLSQDRSLSNVPLRKDEKYTVRELYEAMAIYSANAATVAIAEIVGGSEQNF 148

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKN 204
             +M+ KAK++G++   + N++GL +++               + +AR  A L   L K 
Sbjct: 149 VKMMNEKAKQLGLKGYKFVNSTGLSNEDLKGFHPEGTNEREENVMSARSVATLAYHLLKE 208

Query: 205 FPQYYKYFSI-----RKFRYRNRIITNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTS 255
           +P+  +  S      R+       + N N +L     +   +DG+KTGYT  +G+    +
Sbjct: 209 YPEVLETASTPRKIFREGTDDQIKMDNWNWMLPGLVREYEGVDGLKTGYTEFAGYCFTGT 268

Query: 256 LRYKDDPIVAVVMGMPTS-----QERDQKALELITSFLEKKTLKH 295
                   + VVM   ++     + R ++  +L+       ++K 
Sbjct: 269 AERDGVRFITVVMNAKSNGKSTIEARFEQTEKLLHYGFSNYSIKK 313


>gi|312115142|ref|YP_004012738.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311220271|gb|ADP71639.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 410

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 78/301 (25%), Positives = 143/301 (47%), Gaps = 12/301 (3%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLH 99
            ++ ++  +      + +IDV        K  +  + PAS++K+MTL +IF+ L++ ++ 
Sbjct: 17  ALAQSTGGYQTAAAEATLIDVESGATLFEKNADRLFAPASMSKIMTLAVIFKKLKAGEIT 76

Query: 100 LNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
           ++T+ PVS  A          + +++           I  +  ++AND   A  E ISG+
Sbjct: 77  MDTEFPVSLYAWRNGGAPSRTTSMFIPLNQTAKVSDLIQGIAVQNANDACIAVAEGISGT 136

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           E  FA LM+ +A+ +G+Q + + N++GL       TAR+ A L I + K +P  Y YF  
Sbjct: 137 EDAFAKLMTEEARALGLQKSTFGNSTGLPHPGNQMTARELAALSIHVIKTYPDLYPYFGQ 196

Query: 215 RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           ++F+YR     NHN L       DG+K G+T   G++I  S       +V V+ G+ + +
Sbjct: 197 KEFKYRTYTFRNHNPLQATAIAADGLKPGFTEGVGYSIAASAVRDGRRLVLVMNGLESER 256

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSST----SLKKSLMIKKLKRTYSQFKKIDA 330
           +R ++A +++         K  +   KD +         +K  +  K K        ++A
Sbjct: 257 DRREEAQKILNWGFVN--FKAYKVFDKDEVVGDVRVWGGQKWTLPVKAKEDVVVLLPVNA 314

Query: 331 K 331
           K
Sbjct: 315 K 315


>gi|254472024|ref|ZP_05085425.1| D-alanyl-D-alanine carboxypeptidase protein [Pseudovibrio sp.
           JE062]
 gi|211959226|gb|EEA94425.1| D-alanyl-D-alanine carboxypeptidase protein [Pseudovibrio sp.
           JE062]
          Length = 352

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 85/253 (33%), Positives = 141/253 (55%), Gaps = 2/253 (0%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQS 95
           L +I+IS  S   A    S ++++++   +   +   +P YPAS TK+MT  + FE L +
Sbjct: 15  LGLILISYGSLAPASATPS-LLLNLDTQSVLYAEDAGDPWYPASTTKLMTALVTFEALAN 73

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
           +++   T + +S  A  Q   K  LK  +  T +  I A++  SANDV+ A  E ++GSE
Sbjct: 74  REIDHETSVVMSPWAMRQASLKSGLKVGSVMTLQDAIYAVLVGSANDVAVALAESVAGSE 133

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           + F   M+  A+++GM  + + NA+GL D  Q T+ARD A+L   +   +PQY+  F+  
Sbjct: 134 EAFVQRMNATARRLGMTASHFANANGLFDATQQTSARDLAVLAREIYLGYPQYHDVFATS 193

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           K     + IT+ N+LL ++    G+KTG+  +SG NIV          +AVV+G  T +E
Sbjct: 194 KVTIDGKAITSFNELLTRLPGTVGMKTGFVCSSGRNIVALTDRGGQRYMAVVLGATTGRE 253

Query: 276 RDQKALELITSFL 288
           R ++A +L+T  +
Sbjct: 254 RSERAAKLLTEAM 266


>gi|49481177|ref|YP_036116.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49332733|gb|AAT63379.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 317

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 132/258 (51%), Gaps = 16/258 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E+ AK   ++++ID +   +      +E   PAS++KMMT Y++ E + + K+    
Sbjct: 59  IPPEVDAK---AAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM
Sbjct: 116 PVKMSAKAAQTEGARIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFVQLM 175

Query: 163 SNKAKKIGMQN-TIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           + KAK++ M +   + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 176 NAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQ 235

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         IDG+KTG+T ++G+    + +  D  I+ VVMG 
Sbjct: 236 LAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGT 295

Query: 271 PTSQERDQKALELITSFL 288
               +R  +  +L+T   
Sbjct: 296 EDKTKRFTETNKLMTYAF 313


>gi|206977452|ref|ZP_03238347.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           H3081.97]
 gi|206744302|gb|EDZ55714.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           H3081.97]
          Length = 317

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 69/249 (27%), Positives = 128/249 (51%), Gaps = 13/249 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++++ID +   +      +E   PAS++KMMT Y++ E + + K+     + +S  AA
Sbjct: 65  AKAAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVRWEDPVKMSAKAA 124

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM+ KAK++ M
Sbjct: 125 QTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLMNAKAKQLKM 184

Query: 172 -QNTIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIIT 225
            ++  + NASGL + +      TA D A L   L K++P+  +   +R+ +  + N  + 
Sbjct: 185 SEHAKFANASGLQEPDGSETKMTAGDVANLAYHLIKDYPEILEVTHLRQSQLAFNNINVI 244

Query: 226 NHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           + N +LNK         IDG+KTG+T ++G+    + +  D  I+ VVMG     +R  +
Sbjct: 245 STNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGTKGKTKRFTE 304

Query: 280 ALELITSFL 288
             +L++   
Sbjct: 305 TNKLMSYAF 313


>gi|229027860|ref|ZP_04184018.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH1271]
 gi|228733452|gb|EEL84276.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH1271]
          Length = 443

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 84/362 (23%), Positives = 155/362 (42%), Gaps = 48/362 (13%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMISMASELHAK-------PKYSSIVIDVNKNQMTGFKQ- 71
             ++ +R I L+  +L L+  M+   S   A+          ++I+++ N  ++   K  
Sbjct: 7   KGMFCKRFIALL-TMLTLACSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNA 65

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A       + S + L+    +T
Sbjct: 66  DELLSIASMTKMMSEYLVHEAVAKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGTYT 125

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----- 182
            ++   A+   SAN  + A GE I+G E  F  +M++KAK++G++N  + N++GL     
Sbjct: 126 VKELYEAMAIFSANGATIALGEAIAGKEVDFVKMMNDKAKELGLKNYKFVNSTGLTNKDL 185

Query: 183 ---------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNK 229
                     D+    +A+D A L   L K++P+      I    +R       + N N 
Sbjct: 186 KGMHPAGTTPDEENKMSAKDVATLAQHLLKDYPKVLDTAKIPNKEFRPEKEKFQMLNWNW 245

Query: 230 LLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +L         +DG+KTG T  +G     ++       ++VV+   + Q R  +  +L  
Sbjct: 246 MLKGLSKAYDGVDGLKTGSTPEAGECFTGTVERNGMRFISVVIKTNSRQARFDETKKLYD 305

Query: 286 SFLEK----------KTLKHQQTHRKDNLSSTSL---KKSLMIKKLKRTYSQFKKIDAKA 332
                           ++K Q+T R +N     +    K  +   + +      K + K 
Sbjct: 306 YGFANFEMKQLYKKDSSVKGQETVRVENAKDKDVAVQTKQAVSLPVPKGSKNVYKTELKE 365

Query: 333 HS 334
            S
Sbjct: 366 AS 367


>gi|149181680|ref|ZP_01860173.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Bacillus sp. SG-1]
 gi|148850658|gb|EDL64815.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Bacillus sp. SG-1]
          Length = 384

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 76/278 (27%), Positives = 122/278 (43%), Gaps = 18/278 (6%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDE-PRYPASL 80
           +R    +  +   S+I  S++    A P  S+   IVID +  ++   K    P   AS+
Sbjct: 4   RRIRAYIYTVFIFSVIFSSLSGTAEAAPSVSAQRAIVIDQDTGRVLYEKDAHTPSRIASI 63

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           TK+MT  +  E  +     L   + VS  A     S +YLK       E  +  L+ RS 
Sbjct: 64  TKIMTAILAIESGK-----LEETVKVSNNAVKAEGSSIYLKPGEKIKLEDLVYGLMLRSG 118

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGI 199
           ND + A  E + GS   F  LM+ KA++IGM+NT + N  GL D ++  +TA D A+L  
Sbjct: 119 NDSAVAIAEHVGGSLDGFIFLMNKKAEEIGMRNTHFANPHGLDDHEDHYSTAFDMALLTK 178

Query: 200 LLRKNFPQYYKYFSIRKFRYR------NRIITNHNKLLNK-MHNIDGIKTGYTRNSGFNI 252
              +N  +Y +    +           +R   N N+LL +      G KTGYT+ +   +
Sbjct: 179 YAMQN-EKYKEVAGTKVHTSPDPEHDWDRKWKNKNRLLTELYKYCTGGKTGYTKRAKRTL 237

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           VT+    +  ++AV +  P       +  E      + 
Sbjct: 238 VTTATKGEQNLIAVTLNGPDDWNDHIQMFEFGFKNFDT 275


>gi|301053509|ref|YP_003791720.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis CI]
 gi|300375678|gb|ADK04582.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 317

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 132/258 (51%), Gaps = 16/258 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E+ AK   ++++ID +   +      +E   PAS++KMMT Y++ E + + K+    
Sbjct: 59  IPPEVDAK---AAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM
Sbjct: 116 PVKMSAKAAQTEGARIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFVQLM 175

Query: 163 SNKAKKIGMQN-TIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           + KAK++ M +   + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 176 NAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQ 235

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         IDG+KTG+T ++G+    + +  D  I+ VVMG 
Sbjct: 236 LAFNNINVISTNDMLNKNNEALYIEGIDGLKTGFTDSAGYCFTGTAKQGDIRIITVVMGT 295

Query: 271 PTSQERDQKALELITSFL 288
               +R  +  +L+T   
Sbjct: 296 KGKTKRFTETNKLMTYAF 313


>gi|51893725|ref|YP_076416.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51857414|dbj|BAD41572.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 374

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 65/271 (23%), Positives = 123/271 (45%), Gaps = 31/271 (11%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN- 114
           +++D    Q+   K  DEP  PASLTK+MTL++ F+ +++ ++  +  + VS+ A   N 
Sbjct: 1   MLLDFATGQVLYEKNPDEPIAPASLTKLMTLHLAFKRIEAGQMSYDDPVVVSRNAWAANF 60

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S ++L+     T  + +  L   S ND + A  E I G+ + F  +M+++A+ +G +
Sbjct: 61  PDSSLMFLEPGDKVTVGEVMKGLAIVSGNDAAVALAEHIGGTVENFVKMMNDEAQALGFK 120

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY-FSIRKFRYR----------- 220
              + +  GL  +NQ+ TA + A    L  +  P+  +   S +++ Y            
Sbjct: 121 TFRFVDPHGLSPQNQV-TAGEFARFARLYIQLHPESLEMLHSQKEYSYPQYENLSDARQA 179

Query: 221 --------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP- 271
                        N N LL     +DG+KTG+   +GFN+  + +     +V V++G+  
Sbjct: 180 VTSPEAHEPITQMNRNGLLWTYEGVDGLKTGFVDEAGFNLAVTAQRGGMRLVGVLLGIQA 239

Query: 272 -----TSQERDQKALELITSFLEKKTLKHQQ 297
                 S +R+ +   L++           Q
Sbjct: 240 DSIPEGSAKREAEGAALLSWGFNNFVTVKPQ 270


>gi|213019298|ref|ZP_03335105.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|212995407|gb|EEB56048.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 310

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 120/232 (51%), Gaps = 4/232 (1%)

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MTLY+ F+YL++  + +  +  VS+ A  +  S ++LKE  + T ++ +  +   S ND 
Sbjct: 1   MTLYVAFDYLKAGIIKMEDKFRVSRKAWERKGSSMFLKEGQFVTVKELLEGITIASGNDA 60

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
             A  E I+GSE+ F   M+  A+ + + ++ + N+SG  D+N   +A+D   L   +  
Sbjct: 61  CIALAEGIAGSEENFVAEMNEVAQDLNLNDSHFVNSSGWPDENHFMSAKDLVTLAKRIFT 120

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           +FP+YY  FS +   Y + +  N N LL     +DG+KTG+T   G+ I+ S +  D  I
Sbjct: 121 DFPEYYDLFSEQYLTYNDIVQKNKNLLLFHDIGVDGLKTGHTSAGGYGIIVSAKRNDRRI 180

Query: 264 VAVVMGMPTSQERDQKALEL----ITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
            AVV G+ T +ER ++A  L    +  F  KK         + N+     KK
Sbjct: 181 FAVVNGLDTEKERIEEAKRLIQYSLNHFNTKKIFAKDSVVEEINIVYGKDKK 232


>gi|228933281|ref|ZP_04096137.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228826442|gb|EEM72219.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 317

 Score =  242 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 132/258 (51%), Gaps = 16/258 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E+ AK   ++++ID +   +      +E   PAS++KMMT Y++ E + + K+    
Sbjct: 59  IPPEVDAK---AAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM
Sbjct: 116 PVKMSAKAAQTEGARIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFVQLM 175

Query: 163 SNKAKKIGMQN-TIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           + KAK++ M +   + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 176 NAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQ 235

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         IDG+KTG+T ++G+    + +  D  I+ VVMG 
Sbjct: 236 LAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGT 295

Query: 271 PTSQERDQKALELITSFL 288
               +R  +  +L+T   
Sbjct: 296 EGKTKRFTETNKLMTYAF 313


>gi|218233888|ref|YP_002366673.1| beta-lactamase [Bacillus cereus B4264]
 gi|218161845|gb|ACK61837.1| beta-lactamase [Bacillus cereus B4264]
          Length = 317

 Score =  242 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 71/258 (27%), Positives = 137/258 (53%), Gaps = 16/258 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E++AK   ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+    
Sbjct: 59  IPPEINAK---AAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM
Sbjct: 116 PVKISAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLM 175

Query: 163 SNKAKKIGM-QNTIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             KAK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 176 DAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLRQSQ 235

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         +DG+KTG+T ++G+    + +  D+ I+ VVMG 
Sbjct: 236 LAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGT 295

Query: 271 PTSQERDQKALELITSFL 288
            +  +R  +  +L++   
Sbjct: 296 SSKTKRFTETNKLMSYAF 313


>gi|52143467|ref|YP_083362.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
 gi|118477407|ref|YP_894558.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
           Hakam]
 gi|196036868|ref|ZP_03104255.1| beta-lactamase [Bacillus cereus W]
 gi|196041913|ref|ZP_03109201.1| beta-lactamase [Bacillus cereus NVH0597-99]
 gi|196047003|ref|ZP_03114222.1| beta-lactamase [Bacillus cereus 03BB108]
 gi|218903102|ref|YP_002450936.1| beta-lactamase [Bacillus cereus AH820]
 gi|225863912|ref|YP_002749290.1| beta-lactamase [Bacillus cereus 03BB102]
 gi|228914571|ref|ZP_04078180.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228927044|ref|ZP_04090110.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228945594|ref|ZP_04107944.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229121530|ref|ZP_04250757.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 95/8201]
 gi|229184187|ref|ZP_04311396.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BGSC 6E1]
 gi|300117552|ref|ZP_07055339.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           SJ1]
 gi|51976936|gb|AAU18486.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
 gi|118416632|gb|ABK85051.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
           Hakam]
 gi|195990521|gb|EDX54502.1| beta-lactamase [Bacillus cereus W]
 gi|196022107|gb|EDX60795.1| beta-lactamase [Bacillus cereus 03BB108]
 gi|196027285|gb|EDX65904.1| beta-lactamase [Bacillus cereus NVH0597-99]
 gi|218535102|gb|ACK87500.1| beta-lactamase [Bacillus cereus AH820]
 gi|225788359|gb|ACO28576.1| beta-lactamase [Bacillus cereus 03BB102]
 gi|228599302|gb|EEK56913.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BGSC 6E1]
 gi|228661994|gb|EEL17607.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 95/8201]
 gi|228814112|gb|EEM60383.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228832779|gb|EEM78350.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228844890|gb|EEM89932.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|298725087|gb|EFI65742.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           SJ1]
          Length = 317

 Score =  242 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 132/258 (51%), Gaps = 16/258 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E+ AK   ++++ID +   +      +E   PAS++KMMT Y++ E + + K+    
Sbjct: 59  IPPEVDAK---AAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM
Sbjct: 116 PVKMSAKAAQTEGARIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFVQLM 175

Query: 163 SNKAKKIGMQN-TIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           + KAK++ M +   + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 176 NAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQ 235

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         IDG+KTG+T ++G+    + +  D  I+ VVMG 
Sbjct: 236 LAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGT 295

Query: 271 PTSQERDQKALELITSFL 288
               +R  +  +L+T   
Sbjct: 296 KGKTKRFTETNKLMTYAF 313


>gi|228943200|ref|ZP_04105668.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228975976|ref|ZP_04136496.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228979109|ref|ZP_04139457.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis Bt407]
 gi|228780635|gb|EEM28854.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis Bt407]
 gi|228783733|gb|EEM31792.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228816479|gb|EEM62636.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar berliner ATCC 10792]
          Length = 442

 Score =  242 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 76/326 (23%), Positives = 148/326 (45%), Gaps = 36/326 (11%)

Query: 14  FLTYPYGSIYIQRNIQLMGKI-LFLSIIMI---SMASELHA--KPKYSSIVIDVNKNQMT 67
                   ++ +R I ++  + LF S+ +    + A  + A      S+I+I+ N  ++ 
Sbjct: 1   MEVTEVKGMFCKRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKIL 60

Query: 68  GFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKE 122
             K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S+ A      ++ S + L+ 
Sbjct: 61  YKKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLEN 120

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
              +T ++   A+   SAN  + A  E I+  E  F  +M++K+K+ GM++  + N++GL
Sbjct: 121 GGSYTVKELYEAMAIYSANGATIALVEEIASKEVNFVKMMNDKSKEFGMKDYKFVNSTGL 180

Query: 183 H--------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RI 223
                          D+    +ARD AIL   L ++FP+      I K  ++        
Sbjct: 181 TNNDLKGYHPEGTTLDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQEGGKYPID 240

Query: 224 ITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           + N N +L     +   +DG+KTG T  +G     ++      +++VV+   +   R  +
Sbjct: 241 MANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDE 300

Query: 280 ALELITSFLEKKTLKHQQTHRKDNLS 305
             +L         +K+   +RKD++ 
Sbjct: 301 TKKLYDYGFANFEVKN--VYRKDSVV 324


>gi|212638873|ref|YP_002315393.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus
           WK1]
 gi|212560353|gb|ACJ33408.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus
           WK1]
          Length = 345

 Score =  242 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 78/287 (27%), Positives = 123/287 (42%), Gaps = 18/287 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I+++    ++   K     R  AS+TK+MT  +  E  +         + VS+ A 
Sbjct: 5   AKSAILMEQTTGRVLFEKDAHTKRRIASITKIMTAILAIESGK-----WEELVTVSERAV 59

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S +YLK       +  +  L+ RS ND + A  E + GS + F  LM+ KA +IGM
Sbjct: 60  RTEGSSIYLKPGEKIALKHLVYGLMLRSGNDAAVAIAEHVGGSVEGFVFLMNKKAAEIGM 119

Query: 172 QNTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN------RII 224
            NT + N  GL D +N  +TA D A+L     +N  Q+ +    + +R  N      RI 
Sbjct: 120 TNTEFANPHGLDDAENHYSTAYDMALLMRYAMQN-EQFREVSGTKLYRAPNPTEDWDRIW 178

Query: 225 TNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            N NKLL        G KTGYT+ +   +VT+       ++AV +             E 
Sbjct: 179 RNKNKLLTHLYKYCTGGKTGYTKRAKRTLVTTASKDGLDLIAVTIDAGDDWNDHMAMYEH 238

Query: 284 ITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
             +  E  T+K  +    + +      K L + +    Y   KK +A
Sbjct: 239 GFAHYELVTVKADEIV--EQIQDPFYDKRLFVVR-DFIYPVTKKEEA 282


>gi|213582478|ref|ZP_03364304.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 242

 Score =  242 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 62/237 (26%), Positives = 115/237 (48%), Gaps = 8/237 (3%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPAS 79
            ++I  ++  M     L+   +S A +  A    + +++D    Q+     + + R PAS
Sbjct: 6   RLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +      
Sbjct: 66  LTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSR 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            LI  S ND   A  ++I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D
Sbjct: 126 GLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYD 185

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
            A+L   +    P++Y  +S +   +      N N LL  K  +IDG+KTG+T  +G
Sbjct: 186 LAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAG 242


>gi|229145091|ref|ZP_04273484.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BDRD-ST24]
 gi|228638412|gb|EEK94849.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BDRD-ST24]
          Length = 442

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 79/351 (22%), Positives = 154/351 (43%), Gaps = 36/351 (10%)

Query: 14  FLTYPYGSIYIQRNIQLMGKI-LFLSIIMI---SMASELHA--KPKYSSIVIDVNKNQMT 67
                   ++ +R I ++  + LF S+ +    + A  + A      S+I+I+ N  ++ 
Sbjct: 1   MEVTEVKGMFCKRFITIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKIL 60

Query: 68  GFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKE 122
             K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S+ A      ++ S + L+ 
Sbjct: 61  YEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLEN 120

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
              +T ++   A+   SAN  + A  E I+G E  F  +M++K+K+ GM++  + N++GL
Sbjct: 121 GGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGL 180

Query: 183 H--------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RI 223
                          D+    +ARD AIL   L ++FP+      I K  ++        
Sbjct: 181 TNQDLKGYHPEGTTLDEKNKMSARDCAILAQRLIQDFPKILNTAKIPKKTFQEGGKYPID 240

Query: 224 ITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           + N N +L     +   +DG+KTG T  +      ++      +++VV+   +   R  +
Sbjct: 241 MANFNWMLKGLIKQYEGVDGLKTGTTPEARDCFTGTVERNGMRLISVVIKAKSHTARFDE 300

Query: 280 ALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
             +L         +K+   + KD++        +   K K    Q K+  +
Sbjct: 301 TKKLYDYGFANFEVKN--FYGKDSVIKGYETVRVANAKDKDVVVQTKQAVS 349


>gi|52145200|ref|YP_081628.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
           carboxypeptidase) [Bacillus cereus E33L]
 gi|51978669|gb|AAU20219.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
           carboxypeptidase) [Bacillus cereus E33L]
          Length = 435

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 78/359 (21%), Positives = 154/359 (42%), Gaps = 46/359 (12%)

Query: 22  IYIQRNIQLMGKILFLSIIMIS---MASELHAK---PKYSSIVIDVNKNQMTGFKQ-DEP 74
           ++ +R I L+  +     +++     ++E  A       ++I+++ N  ++   K  DE 
Sbjct: 1   MFCKRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADEL 60

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQ 130
              AS+TKMM+ Y++ + +   KL  + +I VS+ A       + S + L+    +T ++
Sbjct: 61  LSIASMTKMMSEYLVHDAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKE 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL-------- 182
              A+   SAN  + A  E I+G E  F  +M++K+K++G++N  + N++GL        
Sbjct: 121 LYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGM 180

Query: 183 ------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNKLLN 232
                  D+    +A+D A L   L K++P+      I K  +R       ++N N +L 
Sbjct: 181 HPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLK 240

Query: 233 K----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
                   +DG+KTG T  +G     ++       ++VV+   +   R  +  +L     
Sbjct: 241 GLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGF 300

Query: 289 EK----------KTLKHQQTHRKDNLSSTSL---KKSLMIKKLKRTYSQFKKIDAKAHS 334
                        ++K Q+T R +N     +    K  +   + +      K + K  S
Sbjct: 301 ANFEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKDVYKTELKESS 359


>gi|229159188|ref|ZP_04287214.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus R309803]
 gi|228624269|gb|EEK81069.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus R309803]
          Length = 443

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 75/333 (22%), Positives = 145/333 (43%), Gaps = 43/333 (12%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMISMASELHAKP------KYSSIVIDVNKNQMTGFKQ-D 72
             ++ +R I L+  +  +  +++  ++              ++I+++ N  ++   K  D
Sbjct: 7   KGMFCKRFIALVTMLALVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNAD 66

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTT 128
           E    AS+TKMM+ Y++ E +   KL  + +I VS+ A       + S + L+    +T 
Sbjct: 67  ELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTV 126

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------ 182
           ++   A+   SAN  + A  E I+G E  F  +M+NKAK++G++N  + N++GL      
Sbjct: 127 KELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNNKAKELGLKNYKFVNSTGLTNKDLK 186

Query: 183 --------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN----RIITNHNKL 230
                    D+    +A+D A L   L K++P+      I    +R       + N N +
Sbjct: 187 GMHPEGTTPDEENKMSAKDVATLAQHLLKDYPKVLDTAKIPMKVFRPEKEQFKMLNWNWM 246

Query: 231 LNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L         +DG+KTG T  +G     ++      +++VV+   + Q R  +  +L   
Sbjct: 247 LKGLSKAYDGVDGLKTGSTPEAGECFTGTVERNGMRLISVVIKTNSRQARFDETKKLYDY 306

Query: 287 FLEK----------KTLKHQQTHRKDNLSSTSL 309
                          ++K Q+T R +N     +
Sbjct: 307 GFANFEMKQMYKKDSSVKGQETLRVENAKDKDV 339


>gi|209549400|ref|YP_002281317.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209535156|gb|ACI55091.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 431

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 77/329 (23%), Positives = 153/329 (46%), Gaps = 24/329 (7%)

Query: 1   MLQQKIQS-------SAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMI--------SMA 45
           ML+  ++        S ++T LT+ + +I   + ++    I    ++ +        S A
Sbjct: 1   MLKPVLRRLDQFSFLSKRRTALTFCFHAIPDAKPLRTFAGIALACLLPLTTGALAADSGA 60

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +    K   + + I+     +   K  D+   PASL K+MT+ ++F+ +   ++  +T+ 
Sbjct: 61  AGFATKAAQAYM-IEAATGTVLLAKNEDQGFSPASLAKLMTMDLVFDAVTKGQITFDTEY 119

Query: 105 PVSKTAATQNPS-----KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           PVS+ A     +      ++   K+    E  I  +  + AND      E ++GSE++FA
Sbjct: 120 PVSEYAWRTGGAPSRTATMFASLKSRVRVEDLIKGVAIQGANDSCIILAEGMAGSEQQFA 179

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             M+ +A+++GM+   + N++GL D     TAR+   L   L+K++P  Y YF+   F +
Sbjct: 180 ESMTRRARELGMEKAEFGNSTGLPDGKSKVTAREMVTLATALQKSYPNLYPYFAQPDFEW 239

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
                 N N LL      DG+ TG+T   G++IV S+      +   + G+ + +ER ++
Sbjct: 240 NKIFQRNRNPLLGLDLGADGLATGFTEGEGYSIVASVERDGRRLFLALAGVASDKERTEE 299

Query: 280 ALELITSFLEKKTLKHQQTHRKDNLSSTS 308
           A  ++   L     + +Q   ++ +   +
Sbjct: 300 AKRVLEWGL--TAFESRQIFAENEVIGAA 326


>gi|206978355|ref|ZP_03239229.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           H3081.97]
 gi|217957590|ref|YP_002336132.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           AH187]
 gi|206743447|gb|EDZ54880.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           H3081.97]
 gi|217065585|gb|ACJ79835.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
           AH187]
 gi|324324003|gb|ADY19263.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 438

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 79/362 (21%), Positives = 154/362 (42%), Gaps = 46/362 (12%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMIS---MASELHAK---PKYSSIVIDVNKNQMTGFKQ- 71
              ++ +R I L+  +     +++     ++E  A       ++I+++ N  ++   K  
Sbjct: 1   MKGMFCKRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNA 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A       + S + L+    +T
Sbjct: 61  DELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYT 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----- 182
            ++   A+   SAN  + A  E I+G E  F  +M++K+K++G++N  + N++GL     
Sbjct: 121 VKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDL 180

Query: 183 ---------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNK 229
                     D+    +A+D A L   L K++P+      I K  +R       ++N N 
Sbjct: 181 KGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNW 240

Query: 230 LLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +L         +DG+KTG T  +G     ++       ++VV+   +   R  +  +L  
Sbjct: 241 MLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYD 300

Query: 286 SFLEK----------KTLKHQQTHRKDNLSSTSL---KKSLMIKKLKRTYSQFKKIDAKA 332
                           ++K Q+T R +N     +    K  +   + +      K + K 
Sbjct: 301 YGFANFEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKDVYKTELKE 360

Query: 333 HS 334
            S
Sbjct: 361 SS 362


>gi|260752472|ref|YP_003225365.1| serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258551835|gb|ACV74781.1| Serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 400

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 71/281 (25%), Positives = 132/281 (46%), Gaps = 23/281 (8%)

Query: 31  MGKILFLS----IIMISMASELHAKPKYS----SIVIDVNKNQMTGFKQDEPR-YPASLT 81
           M  +LF S    +   + AS   A P  +    + + D++   +   K  + R  PAS+ 
Sbjct: 9   MKPVLFFSASAALCFTAAASYAAAPPFETIAPIAYMKDLSSGAVLYAKDADRRMPPASMA 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-----NPSKLYLKEKTYFTTEQGILALI 136
           KMMT+Y+ F+ ++  +L L+  I V      +       S ++L      +    +  ++
Sbjct: 69  KMMTVYVAFDLIKKGQLKLDQPITVQPETWKKWHGPSAGSTMFLSPNEQVSAANLLHGIV 128

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-QITTARDQA 195
           T S ND      E I+G+E+ F  LM+ KA+KIG+ N+ +  A+G  D      TA D  
Sbjct: 129 TLSGNDACVVLSEGIAGTEQAFVALMNEKAQKIGLTNSHFGTANGWPDGGATYVTAHDLE 188

Query: 196 ILGILLRKNFPQ-YYKYFSIRKFRY-------RNRIITNHNKLLNKMHNIDGIKTGYTRN 247
            L     ++FP  Y +++  R+F +       ++   +N + LL  +   DG+KTG+T  
Sbjct: 189 TLAEATIRDFPDLYRQFYGQREFTWGKTMGSGKDITQSNRDPLLGVIDGADGLKTGHTDE 248

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +G+    S   +   +V V+ G+P++  R ++++  +    
Sbjct: 249 AGYGFTGSAEQRGRRLVMVMAGLPSNAARREQSIAFMNWGF 289


>gi|89895253|ref|YP_518740.1| hypothetical protein DSY2507 [Desulfitobacterium hafniense Y51]
 gi|89334701|dbj|BAE84296.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 379

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 117/259 (45%), Gaps = 17/259 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           + +   A    +++++D     +   K     R PAS TK++T  +  E  +      + 
Sbjct: 36  IPTSSLAITADAAVLMDGATGDILYDKNAHKQRPPASTTKILTAILGLELGKP-----DE 90

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + VS+ AA    S ++L         + +   + +S ND   A  E I+G+E+ F  LM
Sbjct: 91  LVVVSEKAAAVGESTIHLDPGEKILLYELVTGAMVKSGNDACVAIAEQIAGTEEDFVRLM 150

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
           + KA  +G +NT ++N +GL +KN ++TA D A++     +  P +     +++      
Sbjct: 151 NQKAFLLGAKNTHFENTNGLPNKNHVSTAYDLALMARYGLQ-IPAFTSITRLKETEIHFI 209

Query: 223 I------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
                  + N NKLL      DG+KTG T  +G  +V         ++AVV+  P   +R
Sbjct: 210 EPDFFMNLRNTNKLLWNYPYTDGVKTGTTTAAGKCLVAGATKDGRQLIAVVLHAP---DR 266

Query: 277 DQKALELITSFL-EKKTLK 294
              A +L+     E +TL 
Sbjct: 267 FGDAQKLLEWGFNETETLN 285


>gi|229090965|ref|ZP_04222189.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-42]
 gi|228692366|gb|EEL46101.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-42]
          Length = 317

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 71/258 (27%), Positives = 132/258 (51%), Gaps = 16/258 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E+ AK   ++++ID +   +      +E   PAS++KMMT Y++ E + + K+    
Sbjct: 59  IPPEVDAK---AAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM
Sbjct: 116 PVKMSAKAAQTEGARIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFVQLM 175

Query: 163 SNKAKKIGMQN-TIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           + KAK++ M +   + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 176 NAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQ 235

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         IDG+KTG+T ++G+    + +  +  I+ VVMG 
Sbjct: 236 LAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGNTRIITVVMGT 295

Query: 271 PTSQERDQKALELITSFL 288
               +R  +  +L+T   
Sbjct: 296 KGKTKRFTETNKLMTYAF 313


>gi|229603861|ref|YP_002864665.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A0248]
 gi|229268269|gb|ACQ49906.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. A0248]
          Length = 438

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 76/362 (20%), Positives = 153/362 (42%), Gaps = 46/362 (12%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMASELHAKP------KYSSIVIDVNKNQMTGFKQ- 71
              ++ +R I L+  +  +  +++  ++              ++I+++ N  ++   K  
Sbjct: 1   MKGMFCKRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNA 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           DE    AS+TKMM+ Y++ E +   K   + +I VS+ A       + S + L+    +T
Sbjct: 61  DELLSIASMTKMMSEYLVHEAVDKGKFKWDQKIKVSEYAYKVSQDASLSNVALENGGSYT 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----- 182
            ++   A+   SAN  + A  E I+G E  F  +M++K+K++G++N  + N++GL     
Sbjct: 121 VKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDL 180

Query: 183 ---------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNK 229
                     D+    +A+D A L   L K++P+      I K  +R       ++N N 
Sbjct: 181 KGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNW 240

Query: 230 LLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +L         +DG+KTG T  +G     ++       ++VV+   +   R  +  +L  
Sbjct: 241 MLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYD 300

Query: 286 SFLEK----------KTLKHQQTHRKDNLSSTSL---KKSLMIKKLKRTYSQFKKIDAKA 332
                           ++K Q+T R +N     +    K  +   + +   +  K + K 
Sbjct: 301 YGFANFEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKEVYKTELKE 360

Query: 333 HS 334
            S
Sbjct: 361 SS 362


>gi|58698116|ref|ZP_00373039.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58535362|gb|EAL59438.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 310

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 118/232 (50%), Gaps = 4/232 (1%)

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MTLYI F+YL++  +H+  +  VS+ A  +  S ++LKE  + T  + +  +   S ND 
Sbjct: 1   MTLYIAFDYLKAGIIHMEDKFRVSRKAWERKGSSMFLKEGQFVTVRELLEGITIVSGNDA 60

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
                E I+GSE+ F   M+  A+ + + ++ + N+SG  D +   +A+D  +L   +  
Sbjct: 61  CITLAEGIAGSEENFVAEMNEVAQNLNLNDSHFVNSSGWPDGDHFMSAKDLVMLAKRIFT 120

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           +FP+YY  FS +   Y   +  N N LL     +DG+KTGYT   G+ IV S +  D  I
Sbjct: 121 DFPEYYDLFSEQYLTYNEIVQKNKNLLLFHDIGVDGLKTGYTNAGGYGIVASAKRNDRRI 180

Query: 264 VAVVMGMPTSQERDQKALEL----ITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
            AVV G+ T +ER ++A  L    +  F  KK         + N+     KK
Sbjct: 181 FAVVNGLNTEKERIEEAKRLIQYSLNHFNTKKIFAQDSVVEEVNVLYGKDKK 232


>gi|241761932|ref|ZP_04760017.1| Serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373612|gb|EER63184.1| Serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 400

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 71/281 (25%), Positives = 132/281 (46%), Gaps = 23/281 (8%)

Query: 31  MGKILFLS----IIMISMASELHAKPKYS----SIVIDVNKNQMTGFKQDEPR-YPASLT 81
           M  +LF S    +   + AS   A P  +    + + D++   +   K  + R  PAS+ 
Sbjct: 9   MKPVLFFSASAALCFTAAASYAAAPPFETIAPIAYMKDLSSGAVLYAKDADRRMPPASMA 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-----NPSKLYLKEKTYFTTEQGILALI 136
           KMMT+Y+ F+ ++  +L L+  I V      +       S ++L      +    +  ++
Sbjct: 69  KMMTVYVAFDLIKKGQLKLDQPITVQPETWKKWHGPSAGSTMFLSPNEQVSAANLLHGIV 128

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-QITTARDQA 195
           T S ND      E I+G+E+ F  LM+ KA+KIG+ N+ +  A+G  D      TA D  
Sbjct: 129 TLSGNDACVVLSEGIAGTEQAFVALMNEKAQKIGLTNSHFGTANGWPDGGATYVTAHDLE 188

Query: 196 ILGILLRKNFPQ-YYKYFSIRKFRY-------RNRIITNHNKLLNKMHNIDGIKTGYTRN 247
            L     ++FP  Y +++  R+F +       ++   +N + LL  +   DG+KTG+T  
Sbjct: 189 TLAEATIRDFPDLYRQFYGQREFTWGKTMGSGKDITQSNRDPLLGVIDGADGLKTGHTDE 248

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +G+    S   +   +V V+ G+P++  R ++++  +    
Sbjct: 249 AGYGFTGSAEQRGRRLVMVMAGLPSNAARREQSIAFMNWGF 289


>gi|56551985|ref|YP_162824.1| serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56543559|gb|AAV89713.1| Serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 400

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 71/281 (25%), Positives = 132/281 (46%), Gaps = 23/281 (8%)

Query: 31  MGKILFLS----IIMISMASELHAKPKYS----SIVIDVNKNQMTGFKQDEPR-YPASLT 81
           M  +LF S    +   + AS   A P  +    + + D++   +   K  + R  PAS+ 
Sbjct: 9   MKPVLFFSASAALCFTAAASYAAAPPFETIAPIAYMKDLSSGAVLYAKDADRRMPPASMA 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-----NPSKLYLKEKTYFTTEQGILALI 136
           KMMT+Y+ F+ ++  +L L+  I V      +       S ++L      +    +  ++
Sbjct: 69  KMMTVYVAFDLIKKGQLKLDQPITVQPETWKKWHGPSAGSTMFLSPNEQVSAANLLHGIV 128

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-QITTARDQA 195
           T S ND      E I+G+E+ F  LM+ KA+KIG+ N+ +  A+G  D      TA D  
Sbjct: 129 TLSGNDACVVLSEGIAGTEQAFVALMNEKAQKIGLTNSHFGTANGWPDGGATYVTAHDLE 188

Query: 196 ILGILLRKNFPQ-YYKYFSIRKFRY-------RNRIITNHNKLLNKMHNIDGIKTGYTRN 247
            L     ++FP  Y +++  R+F +       ++   +N + LL  +   DG+KTG+T  
Sbjct: 189 TLAEATIRDFPDLYRQFYGQREFTWGKTMGSGKDITQSNRDPLLGVIDGADGLKTGHTDE 248

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +G+    S   +   +V V+ G+P++  R ++++  +    
Sbjct: 249 AGYGFTGSAEQRGRRLVMVMAGLPSNAARREQSIAFMNWGF 289


>gi|56420821|ref|YP_148139.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus kaustophilus
           HTA426]
 gi|56380663|dbj|BAD76571.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus kaustophilus
           HTA426]
          Length = 382

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 114/259 (44%), Gaps = 16/259 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I+I+ +  ++   K     R  AS+TK+MT  +  E  +     ++  + VS  A 
Sbjct: 34  AKSAILIEQHSGRVLFAKDAYTKRRIASITKIMTAILAIESGK-----MDDTVTVSARAV 88

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S +YL++         +  L+ RS ND + A  E + GS + F  LM+ KA +IGM
Sbjct: 89  RTEGSSIYLRQGEKIKLRDLVYGLMLRSGNDAAVAIAEHVGGSVEGFVFLMNQKAAEIGM 148

Query: 172 QNTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-------RNRI 223
           ++T + N  GL D +N  +TA D A+L     KN  ++ +    + +R          R+
Sbjct: 149 RDTEFANPHGLDDAENHYSTAYDMALLMQYAMKN-KEFRRISGTKVYRAPAPPGEDGARV 207

Query: 224 ITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
             N NKLL        G KTGYT+ +   +VT+       ++AV +  P          E
Sbjct: 208 WRNKNKLLTSLYEYCTGGKTGYTKRAHRTLVTTASKGGIDLIAVTLDAPDDWNDHIAMYE 267

Query: 283 LITSFLEKKTLKHQQTHRK 301
              S      +  ++   K
Sbjct: 268 YGFSHYHIAKVSSERVVDK 286


>gi|295402720|ref|ZP_06812662.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294975251|gb|EFG50887.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 450

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 127/293 (43%), Gaps = 33/293 (11%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           FL       A +       ++I++D N  ++   K  D     AS+TKMMT Y++ E ++
Sbjct: 21  FLPFHAAKAAGDPLNIEADAAILVDANTGRILYQKNIDTVLGIASMTKMMTEYLLLEAVK 80

Query: 95  SKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
            K++  + Q   S         ++ S + L++   +T  +   A+   SAN  + A  E 
Sbjct: 81  EKRVKWDQQYTPSDYVYRLSQDRSLSNVPLRKDGKYTIRELYEAMAIYSANAATVAIAEI 140

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------------QITTARDQAI 196
           + GSE+ F  +M+ KA ++G++   + N++GL +++               + +AR  A 
Sbjct: 141 VGGSEQNFVKMMNEKANQLGLKGYKFVNSTGLSNEDLKGFHPEGTNQSEENVMSARSVAT 200

Query: 197 LGILLRKNFPQYYKYFSI-----RKFRYRNRIITNHNKLLNK----MHNIDGIKTGYTRN 247
           L   L K +P+  +  S      R+       + N N +L         +DG+KTGYT  
Sbjct: 201 LAYHLLKEYPEVLETASTPRKIFREGTDDQIKMDNWNWMLPGLVHAYEGVDGLKTGYTEF 260

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTS-----QERDQKALELITSFLEKKTLKH 295
           +G+    +        + VVM   ++     + R ++  +L+       ++K 
Sbjct: 261 AGYCFTGTAERNGVRFITVVMNAKSNGKSTIEARFEQTRKLLDYGFSNYSMKK 313


>gi|229096494|ref|ZP_04227465.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-29]
 gi|229115468|ref|ZP_04244874.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock1-3]
 gi|228667881|gb|EEL23317.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock1-3]
 gi|228686700|gb|EEL40607.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-29]
          Length = 317

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 68/249 (27%), Positives = 130/249 (52%), Gaps = 13/249 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++++ID +   +      +E   PAS++KMMT Y++ E + + K+     + +S+ AA
Sbjct: 65  AKAAMIIDASNGDVIYQHNENEAFAPASMSKMMTAYLLLESVHNGKVRWEDPVKMSEKAA 124

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +++ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM+ KAK++ M
Sbjct: 125 QTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFVQLMNAKAKQLEM 184

Query: 172 -QNTIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIIT 225
            ++  + NASGL + +      TA D A L   L K++P+  +   +R+ +  + N  + 
Sbjct: 185 SEHAKFANASGLQEPDGSETKMTAADVAKLAYHLIKDYPEILEVTHLRQSQLAFNNINVI 244

Query: 226 NHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           + N +LNK         IDG+KTG+T ++G+    + +  D  I+ VVMG  +  +R  +
Sbjct: 245 STNDMLNKNNKSLYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGTSSKTKRFTE 304

Query: 280 ALELITSFL 288
             +L++   
Sbjct: 305 TNKLMSYTF 313


>gi|325290352|ref|YP_004266533.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965753|gb|ADY56532.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 292

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 67/262 (25%), Positives = 111/262 (42%), Gaps = 16/262 (6%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSK 96
           ++ MI     + A   +++I++D    ++   +Q      PAS TK+MT  +  E L   
Sbjct: 38  TMTMIDQHWSVPAITAHTAILMDAQTGEVLYERQSRKVSPPASTTKIMTAILALE-LSKG 96

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
               +  + VS+ A     S +YL +       + I   + +S ND   A  E  +G+  
Sbjct: 97  ----DEIVTVSEKAGAVGESSIYLNKGDKIKMSELIEGALVKSGNDACVAIAEQTAGTVD 152

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR- 215
            F  LM+ K   IG  NT + N +GL  KN  + A D AI+     +N  Q+ +    + 
Sbjct: 153 SFVELMNKKVLTIGGYNTHFVNPNGLPAKNHYSCAYDLAIMARYALQN-DQFSELVKTKY 211

Query: 216 ---KFRYRNRI--ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
               F    +I    N NKLL       G+KTG T  +G  +V S   ++  ++ VV+  
Sbjct: 212 ASISFDEPPKIEQFKNTNKLLWSYPFTSGVKTGTTNEAGKCLVASANKENRKLICVVLNA 271

Query: 271 PTSQERDQKALELITSFLEKKT 292
           P   +R   + +L         
Sbjct: 272 P---DRYGDSQKLFNWGFGNTK 290


>gi|228983269|ref|ZP_04143484.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229153793|ref|ZP_04281925.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus ATCC 4342]
 gi|229194404|ref|ZP_04321209.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus m1293]
 gi|228589060|gb|EEK47073.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus m1293]
 gi|228629662|gb|EEK86357.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus ATCC 4342]
 gi|228776449|gb|EEM24800.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 443

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 80/361 (22%), Positives = 154/361 (42%), Gaps = 46/361 (12%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMIS---MASELHAK---PKYSSIVIDVNKNQMTGFKQ-D 72
             ++ +R I L+  +     +++     ++E  A       ++I+++ N  ++   K  D
Sbjct: 7   KGMFCKRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNAD 66

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTT 128
           E    AS+TKMM+ Y++ E +   KL  + +I VS+ A       + S + L+    +T 
Sbjct: 67  ELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTV 126

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------ 182
           ++   A+   SAN  + A  E I+G E  F  +M+NK+K++G++N  + N++GL      
Sbjct: 127 KELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNNKSKELGLKNYKFVNSTGLTNKDLK 186

Query: 183 --------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNKL 230
                    D+    +A+D A L   L K++P+      I K  +R       ++N N +
Sbjct: 187 GMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWM 246

Query: 231 LNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L         +DG+KTG T  +G     ++       ++VV+   +   R  +  +L   
Sbjct: 247 LKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDY 306

Query: 287 FLEK----------KTLKHQQTHRKDNLSSTSL---KKSLMIKKLKRTYSQFKKIDAKAH 333
                          ++K Q+T R +N     +    K  +   + +      K + K  
Sbjct: 307 GFANFEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKDVYKTELKES 366

Query: 334 S 334
           S
Sbjct: 367 S 367


>gi|229136857|ref|ZP_04265486.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BDRD-ST26]
 gi|228646592|gb|EEL02797.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BDRD-ST26]
          Length = 443

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 79/361 (21%), Positives = 154/361 (42%), Gaps = 46/361 (12%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMIS---MASELHAK---PKYSSIVIDVNKNQMTGFKQ-D 72
             ++ +R I L+  +     +++     ++E  A       ++I+++ N  ++   K  D
Sbjct: 7   KGMFCKRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNAD 66

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTT 128
           E    AS+TKMM+ Y++ E +   KL  + +I VS+ A       + S + L+    +T 
Sbjct: 67  ELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTV 126

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------ 182
           ++   A+   SAN  + A  E I+G E  F  +M++K+K++G++N  + N++GL      
Sbjct: 127 KELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLK 186

Query: 183 --------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNKL 230
                    D+    +A+D A L   L K++P+      I K  +R       ++N N +
Sbjct: 187 GMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWM 246

Query: 231 LNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L         +DG+KTG T  +G     ++       ++VV+   +   R  +  +L   
Sbjct: 247 LKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDY 306

Query: 287 FLEK----------KTLKHQQTHRKDNLSSTSL---KKSLMIKKLKRTYSQFKKIDAKAH 333
                          ++K Q+T R +N     +    K  +   + +      K + K  
Sbjct: 307 GFANFEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKDVYKTELKES 366

Query: 334 S 334
           S
Sbjct: 367 S 367


>gi|261417877|ref|YP_003251559.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
           sp. Y412MC61]
 gi|261374334|gb|ACX77077.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
           sp. Y412MC61]
          Length = 382

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 114/259 (44%), Gaps = 16/259 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I+I+ +  ++   K     R  AS+TK+MT  +  E  +     ++  + VS  A 
Sbjct: 34  AKSAILIEQHSGRVLFAKDAYTKRRIASITKIMTAILAIESGK-----MDDTVTVSARAV 88

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S +YL++         +  L+ RS ND + A  E + GS + F  LM+ KA +IGM
Sbjct: 89  RTEGSSIYLRQGEKIKLRDLVYGLMLRSGNDAAVAIAEHVGGSVEGFVFLMNQKAAEIGM 148

Query: 172 QNTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-------RNRI 223
           ++T + N  GL D +N  +TA D A+L     KN  ++ +    + +R          R+
Sbjct: 149 RDTEFANPHGLDDAENHYSTAYDMALLMQYAMKN-KEFRRISGTKVYRAPAPPGEDGARV 207

Query: 224 ITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
             N NKLL        G KTGYT+ +   +VT+       ++AV +  P          E
Sbjct: 208 WRNKNKLLTSLYEYCTGGKTGYTKRAHRTLVTTASKGGIDLIAVTLDAPDDWNDHIAMYE 267

Query: 283 LITSFLEKKTLKHQQTHRK 301
              S      +  ++   K
Sbjct: 268 YGFSHYHIAKVSSERVVDK 286


>gi|307292800|ref|ZP_07572646.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingobium
           chlorophenolicum L-1]
 gi|306880866|gb|EFN12082.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingobium
           chlorophenolicum L-1]
          Length = 387

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 135/295 (45%), Gaps = 19/295 (6%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTK 82
           +++++  +  +  LS  + + A    ++   +  + D++   +   K  E R  PAS+ K
Sbjct: 1   MKKSVAALLFVGLLSQPLTAAAPPYTSEAPIAY-LKDMSSGAVLYDKGGETRMPPASMAK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-----NPSKLYLKEKTYFTTEQGILALIT 137
           MMT ++ F  +Q   L L+ +  V      Q       S ++L      + E  +  ++T
Sbjct: 60  MMTAHVAFRLIQKGDLKLDQKFTVRPETWQQWHGPQAGSTMFLSPGEQVSVENLLHGIVT 119

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-QITTARDQAI 196
            S ND      E I+G+E+ F  LM+ +AK++G++N+ +  ++G  D+     TA D A 
Sbjct: 120 LSGNDACVVLAEGIAGTEQAFVALMNQEAKRLGLKNSNFGTSNGWPDEGVTYVTAADLAS 179

Query: 197 LGILLRKNFPQ-YYKYFSIRKFRYR------NRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
           L     +  P  Y K+++ R F +       +    N N +L K+   DG+KTG+T  +G
Sbjct: 180 LAEATIEETPSLYKKFYATRAFTWGKTMGGADIEQGNRNPILGKVAGADGLKTGHTEEAG 239

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE----KKTLKHQQTHR 300
           +    S   +   +V VV G+ ++ +R  +++  +         +   K  QT  
Sbjct: 240 YGFTGSAEQEGRRLVMVVAGLTSANQRIAESVRFMDWGFRAWKAQPLFKKGQTVE 294


>gi|229084940|ref|ZP_04217192.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-44]
 gi|228698256|gb|EEL50989.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-44]
          Length = 340

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 70/248 (28%), Positives = 132/248 (53%), Gaps = 13/248 (5%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++++ID +  Q+     +E    PAS++KMMT YI+ E + + K+H + Q+ +S  +A  
Sbjct: 90  AAMIIDASDGQVMYKNNEEEQLAPASMSKMMTAYILLENIHNGKVHWDDQVKISAKSAQA 149

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +++ ++     T +    AL+ +SAN+ + A  E ++ +E+ FA +M+  AK++ +  
Sbjct: 150 EGARIPVQTGDVLTVKDLYHALMIQSANNSAVALAEHMAKTEQDFAQVMNQTAKQLELSE 209

Query: 174 -TIYKNASGL---HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNH 227
            T + NASGL          T  D A L   L K++P+      +R+ +  + N  +T+ 
Sbjct: 210 ATKFANASGLQEADGSETKMTVADVAKLAYRLVKDYPEILDVTHLRQSQLAFNNITVTST 269

Query: 228 NKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           N++LN       M  +DG+KTG+T ++G+    + +  D  IV VVMG  +  +R  +  
Sbjct: 270 NEMLNPANQELYMEGMDGLKTGFTDSAGYCFTGTAKQGDKRIVTVVMGTKSEMKRFTETH 329

Query: 282 ELITSFLE 289
           +L++   E
Sbjct: 330 KLMSYGFE 337


>gi|310658666|ref|YP_003936387.1| serine-type d-ala-d-ala carboxypeptidase [Clostridium sticklandii
           DSM 519]
 gi|308825444|emb|CBH21482.1| Serine-type D-Ala-D-Ala carboxypeptidase precursor [Clostridium
           sticklandii]
          Length = 433

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 94/328 (28%), Positives = 146/328 (44%), Gaps = 42/328 (12%)

Query: 12  KTFLTYPYGSIYIQRNIQLMGKILFLSI-IMISMASELHAK-PKYSSIVIDVNKNQMTGF 69
           KT L + YG I           ILFL++ I  S AS +       ++I+I+++  ++   
Sbjct: 2   KTKLCFVYGII----------TILFLNLFISSSFASPIEPDISAEAAILIEIDSGEILYE 51

Query: 70  KQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           K    P YPAS TK+MT  +  E+     L+L  +I V +     + S +YL     FT 
Sbjct: 52  KNANAPMYPASTTKIMTALLALEH-----LNLEDKITVPEDMGPADGSAMYLLPGEVFTV 106

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            + +  L+ +SAND +      ISG  + FA LM+ +AK IG  NT + N +GLHD +  
Sbjct: 107 RELLDGLLVKSANDAAVLLARTISGDIQSFATLMNQRAKDIGCANTSFANPNGLHDPSHT 166

Query: 189 TTARDQAILGILLRKNFP------QYYKYFSIRKFRYRNRIITNHNKLLN---------- 232
            +A D A++     KN        Q     +        R   N N+ L           
Sbjct: 167 ISAHDMALIAREAMKNATFRELVSQVNVTLNETPQTPEKRYFRNTNRFLWSTSKIIYNNE 226

Query: 233 ----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF- 287
               K   +DGIKTGYT  +G  +V+S +  D  +++VV    +  +  + +  L+    
Sbjct: 227 YIPIKYEVVDGIKTGYTGEAGNCLVSSGKKNDIRVISVVFKA-SGYDVYRDSRLLLDYGF 285

Query: 288 --LEKKTLKHQQTHRKDNLSSTSLKKSL 313
              EKKTL  + T       + S + SL
Sbjct: 286 DNFEKKTLIKKDTVLGSQPINYSSQGSL 313


>gi|229043743|ref|ZP_04191445.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH676]
 gi|228725596|gb|EEL76851.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH676]
          Length = 317

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 71/258 (27%), Positives = 137/258 (53%), Gaps = 16/258 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E++AK   ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+    
Sbjct: 59  IPPEINAK---AAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM
Sbjct: 116 PVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLM 175

Query: 163 SNKAKKIGM-QNTIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             KAK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 176 DAKAKQLKMSEHAKFANASGLQEPDGSETKMTATDVAQLAYHLIKDYPEILEVTHLRQSQ 235

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         +DG+KTG+T ++G+    + +  D+ I+ VVMG 
Sbjct: 236 LAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGT 295

Query: 271 PTSQERDQKALELITSFL 288
            +  +R  +  +L++   
Sbjct: 296 SSKTKRFTETNKLMSYAF 313


>gi|42779091|ref|NP_976338.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987]
 gi|42735006|gb|AAS38946.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987]
          Length = 438

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 79/362 (21%), Positives = 153/362 (42%), Gaps = 46/362 (12%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMIS---MASELHAK---PKYSSIVIDVNKNQMTGFKQ- 71
              ++ +R I L+        +++     ++E  A       ++I+++ N  ++   K  
Sbjct: 1   MKGMFCKRFIALVTMFTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNA 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A       + S + L+    +T
Sbjct: 61  DELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYT 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----- 182
            ++   A+   SAN  + A  E I+G E  F  +M++K+K++G++N  + N++GL     
Sbjct: 121 VKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDL 180

Query: 183 ---------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNK 229
                     D+    +A+D A L   L K++P+      I K  +R       ++N N 
Sbjct: 181 KGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNW 240

Query: 230 LLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +L         +DG+KTG T  +G     ++       ++VV+   +   R  +  +L  
Sbjct: 241 MLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYD 300

Query: 286 SFLEK----------KTLKHQQTHRKDNLSSTSL---KKSLMIKKLKRTYSQFKKIDAKA 332
                           ++K Q+T R +N     +    K  +   + +      K + K 
Sbjct: 301 YGFANFEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKDVYKTELKE 360

Query: 333 HS 334
            S
Sbjct: 361 SS 362


>gi|222093783|ref|YP_002527831.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1]
 gi|221237829|gb|ACM10539.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1]
          Length = 435

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 79/359 (22%), Positives = 154/359 (42%), Gaps = 46/359 (12%)

Query: 22  IYIQRNIQLMGKILFLSIIMIS---MASELHAK---PKYSSIVIDVNKNQMTGFKQ-DEP 74
           ++ +R I L+  +     +++     ++E  A       ++I+++ N  ++   K  DE 
Sbjct: 1   MFCKRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNADEL 60

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQ 130
              AS+TKMM+ Y++ E +   KL  + +I VS+ A       + S + L+    +T ++
Sbjct: 61  LSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKE 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL-------- 182
              A+   SAN  + A  E I+G E  F  +M++K+K++G++N  + N++GL        
Sbjct: 121 LYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGM 180

Query: 183 ------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNKLLN 232
                  D+    +A+D A L   L K++P+      I K  +R       ++N N +L 
Sbjct: 181 HPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLK 240

Query: 233 K----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
                   +DG+KTG T  +G     ++       ++VV+   +   R  +  +L     
Sbjct: 241 GLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGF 300

Query: 289 EK----------KTLKHQQTHRKDNLSSTSL---KKSLMIKKLKRTYSQFKKIDAKAHS 334
                        ++K Q+T R +N     +    K  +   + +      K + K  S
Sbjct: 301 ANFEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKDVYKTELKESS 359


>gi|299769193|ref|YP_003731219.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter sp. DR1]
 gi|298699281|gb|ADI89846.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter sp. DR1]
          Length = 439

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 81/313 (25%), Positives = 139/313 (44%), Gaps = 25/313 (7%)

Query: 30  LMGKILFLSIIMISM--ASELHAKP----KYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
            +      SI   ++  A+ L+  P      +  ++D    Q+         R PASLTK
Sbjct: 4   FLSLFTLFSIFCTTLTNAALLNIAPESVEAAAWTIVDTQSGQIIAEHNSHVQRAPASLTK 63

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           MM  YI  + +++ KL     I  +        + S++YLK     + +Q +  LI  SA
Sbjct: 64  MMVAYIALKEIKAGKLKKEEIITATPVVGVVQWDESQMYLKAGEQISVDQLLAGLIVMSA 123

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND +    E ISG    F   M+ +A+ +GM++T + N  G+   +  TTA D ++LG  
Sbjct: 124 NDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPPGITMPDHYTTAHDLSLLGQA 183

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-- 258
           + K  P+Y  Y  +  F Y  R     N  L    ++DG+KTGYT+ +G+N+  +     
Sbjct: 184 VIKETPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTASRPS 243

Query: 259 -----KDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSL 313
                    ++ +V+G P++ +R + A +L+             T+ +D +     K   
Sbjct: 244 FSSDLAQRRLLVIVLGTPSAVKRAEIADKLMNLAY---------TYTRDEVIIPEQKLIA 294

Query: 314 MIKKLKRTYSQFK 326
            +  +K T   FK
Sbjct: 295 ELPVVKSTLKMFK 307


>gi|326940194|gb|AEA16090.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 437

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 76/321 (23%), Positives = 148/321 (46%), Gaps = 36/321 (11%)

Query: 19  YGSIYIQRNIQLMGKI-LFLSIIMI---SMASELHA--KPKYSSIVIDVNKNQMTGFKQ- 71
              ++ +R I ++  + LF S+ +    + A  + A      S+I+I+ N  ++   K  
Sbjct: 1   MKGMFCKRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKILYKKNA 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           DE    AS+TKMM+ Y++ E +   KL  + ++ +S+ A      ++ S + L+    +T
Sbjct: 61  DESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYT 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---- 183
            ++   A+   SAN  + A  E I+  E  F  +M++K+K+ GM++  + N++GL     
Sbjct: 121 VKELYEAMAIYSANGATIALVEEIASKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNNDL 180

Query: 184 ----------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RIITNHN 228
                     D+    +ARD AIL   L ++FP+      I K  ++        + N N
Sbjct: 181 KGYHPEGTTLDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQEGGKYPIDMANFN 240

Query: 229 KLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            +L     +   +DG+KTG T  +G     ++      +++VV+   +   R  +  +L 
Sbjct: 241 WMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLY 300

Query: 285 TSFLEKKTLKHQQTHRKDNLS 305
                   +K+   +RKD++ 
Sbjct: 301 DYGFANFEVKN--VYRKDSVV 319


>gi|308069547|ref|YP_003871152.1| Penicillin-binding protein 5* precursor (D-alanyl-D-alanine
           carboxypeptidase) [Paenibacillus polymyxa E681]
 gi|305858826|gb|ADM70614.1| Penicillin-binding protein 5* precursor (D-alanyl-D-alanine
           carboxypeptidase) [Paenibacillus polymyxa E681]
          Length = 420

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 65/261 (24%), Positives = 113/261 (43%), Gaps = 13/261 (4%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYL 93
           L    I    A         ++ +IDV   ++    + D     ASLTK+MT  +  E+ 
Sbjct: 43  LVQGAIKTEAAPPALGTHAQAASLIDVTSGRIIYSTEGDRELRIASLTKIMTAIVAIEHG 102

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           +     L  ++ VS TA  +  S L+L+     + E  +  L+ RS ND ++A  E + G
Sbjct: 103 R-----LQDRVKVSPTAYAKEGSSLFLQMGEQMSLENMLYGLMLRSGNDAASAIAEHVGG 157

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           +E+ F  LM++KA ++G+ +T + N  GL  +   ++A D A L      N P + +   
Sbjct: 158 TEEGFVHLMNDKAVQLGLSHTHFANPHGLDAEGHYSSANDMARLTAYALHN-PTFARIVK 216

Query: 214 IRKFRYRN------RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
               +  N          N NK+L      DG+KTG+T+ +   +V+S       + AV 
Sbjct: 217 TELKKAPNPNDSWDYSWHNKNKMLRLYEGADGVKTGFTKKAFRCLVSSATRDGRQLAAVT 276

Query: 268 MGMPTSQERDQKALELITSFL 288
           +          + L+    + 
Sbjct: 277 LNDGDDWNDHARMLDYGFRYY 297


>gi|52081783|ref|YP_080574.1| putative carboxypeptidase [Bacillus licheniformis ATCC 14580]
 gi|52787169|ref|YP_092998.1| hypothetical protein BLi03478 [Bacillus licheniformis ATCC 14580]
 gi|319647699|ref|ZP_08001917.1| hypothetical protein HMPREF1012_02956 [Bacillus sp. BT1B_CT2]
 gi|52004994|gb|AAU24936.1| putative carboxypeptidase [Bacillus licheniformis ATCC 14580]
 gi|52349671|gb|AAU42305.1| putative protein [Bacillus licheniformis ATCC 14580]
 gi|317390040|gb|EFV70849.1| hypothetical protein HMPREF1012_02956 [Bacillus sp. BT1B_CT2]
          Length = 384

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 84/315 (26%), Positives = 138/315 (43%), Gaps = 21/315 (6%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQD-EPRYP 77
           + ++R++  +  +        S  +    KP+    S+I+ID    Q+   K   +  YP
Sbjct: 1   MNVKRSLLFIIVLCLTLFFHSSAQAGEKNKPEIKSVSAILIDGKSGQVLYEKNSRKKMYP 60

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS+TK+ T     E       +L  ++ VSK AA    S +YL+E      ++ +  L+ 
Sbjct: 61  ASITKIATAIYAIE-----NGNLEDRVKVSKNAAQTEGSSVYLEEGESVPLKRLLQGLLM 115

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNK-AKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            S ND  TA  E +SGS K+FA  ++   A+  G+ +T + N  GL DKN  TT+ D A 
Sbjct: 116 NSGNDAGTAIAEHLSGSVKQFADDLNAFIAEHAGVHDTHFMNPHGLFDKNHYTTSADMAR 175

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRII----TNHNKLLNK---MHNIDGIKTGYTRNSG 249
           +     KN   +   FS ++  +  +       NH+++L        I G KTG+   S 
Sbjct: 176 ITEYAMKN-KTFRALFSEKQTDWHGQTWDTTLKNHHRMLTGEIPYKGITGGKTGFVDESK 234

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF---LEKKTLKHQQTHRKDNLSS 306
             +VT+       ++AVVM   + +        L+       E + LK  +     N +S
Sbjct: 235 HTLVTTATRGSLDLIAVVMKADSKKMMYSDTKALLDEGFHNFETQELKKGEAFTDQNGTS 294

Query: 307 TSLKKSLMIKKLKRT 321
             LK  L + K K  
Sbjct: 295 HELKDPLYVTKKKGE 309


>gi|184159011|ref|YP_001847350.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii ACICU]
 gi|332874790|ref|ZP_08442660.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6014059]
 gi|183210605|gb|ACC58003.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii ACICU]
 gi|322508991|gb|ADX04445.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii
           1656-2]
 gi|323518975|gb|ADX93356.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332737051|gb|EGJ68008.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6014059]
          Length = 439

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 71/272 (26%), Positives = 126/272 (46%), Gaps = 16/272 (5%)

Query: 30  LMGKILFLSIIMISMASEL------HAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
            +      SI   ++ +         +    +  ++D    Q+         R PASLTK
Sbjct: 4   FLSLFTLFSIFCTTLTNAALLNIASESVEAAAWTIVDTQSGQIIAEHNSHVQRAPASLTK 63

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSK--TAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           MM  YI  + +++ KL LN  I  +   +    + S++YLK     + +Q +  LI  SA
Sbjct: 64  MMVAYIALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIVMSA 123

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND +    E ISG    F   M+ +A+ +GM++T + N +G+   +  TTA D ++L   
Sbjct: 124 NDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPAGITMPDHYTTAHDLSLLSQA 183

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-- 258
           +    P+Y  Y  +  F Y  R     N  L    ++DG+KTGYT+ +G+N+  +     
Sbjct: 184 VIHQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTASRPS 243

Query: 259 -----KDDPIVAVVMGMPTSQERDQKALELIT 285
                    ++ +V+G P++ +R + A +L+ 
Sbjct: 244 FSPNLPQRRLLVIVLGTPSAVKRAEIADKLMN 275


>gi|30260203|ref|NP_842580.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Ames]
 gi|47525265|ref|YP_016614.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|30253524|gb|AAP24066.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. Ames]
 gi|47500413|gb|AAT29089.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
           str. 'Ames Ancestor']
          Length = 435

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 76/359 (21%), Positives = 153/359 (42%), Gaps = 46/359 (12%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKP------KYSSIVIDVNKNQMTGFKQ-DEP 74
           ++ +R I L+  +  +  +++  ++              ++I+++ N  ++   K  DE 
Sbjct: 1   MFCKRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADEL 60

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQ 130
              AS+TKMM+ Y++ E +   K   + +I VS+ A       + S + L+    +T ++
Sbjct: 61  LSIASMTKMMSEYLVHEAVDKGKFKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKE 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL-------- 182
              A+   SAN  + A  E I+G E  F  +M++K+K++G++N  + N++GL        
Sbjct: 121 LYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGM 180

Query: 183 ------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNKLLN 232
                  D+    +A+D A L   L K++P+      I K  +R       ++N N +L 
Sbjct: 181 HPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLK 240

Query: 233 K----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
                   +DG+KTG T  +G     ++       ++VV+   +   R  +  +L     
Sbjct: 241 GLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGF 300

Query: 289 EK----------KTLKHQQTHRKDNLSSTSL---KKSLMIKKLKRTYSQFKKIDAKAHS 334
                        ++K Q+T R +N     +    K  +   + +   +  K + K  S
Sbjct: 301 ANFEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKEVYKTELKESS 359


>gi|295109007|emb|CBL22960.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162]
          Length = 415

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 75/244 (30%), Positives = 121/244 (49%), Gaps = 15/244 (6%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +++I+ +  ++   K +  R+  AS TK+MT  +  E        LN ++  SK AA+  
Sbjct: 177 ALLINADTGKVLYSKNENLRHANASTTKIMTCILALE-----NSSLNDKVTFSKKAASVE 231

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           PSKLY K    F     + +L+  S ND + A  E ISGS   FA LM+ KA+++G  NT
Sbjct: 232 PSKLYAKAGETFYMRDLLYSLMVPSHNDTAIAIAEHISGSTSAFAQLMNKKARELGCTNT 291

Query: 175 IYKNASGLHDK-NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN------RIITNH 227
            +   +GL    N  TTA D AI+     +N P + K  + + + +++        +   
Sbjct: 292 HFVTPNGLDAGLNHYTTASDLAIIARYAIQN-PTFQKLINTKSYSFKSLNTKRYFTVATT 350

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVMGMPTSQERDQKALELITS 286
           N LL     + G+KTG T  +G+  V   R  K +  ++V +G PTS  R + +  L+T 
Sbjct: 351 NALLGTQTGVVGLKTGVTNKAGYCFVGLCRSRKGNTYISVTLGGPTSAARWRDSKILLTY 410

Query: 287 FLEK 290
             +K
Sbjct: 411 AYKK 414


>gi|262172042|ref|ZP_06039720.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus MB-451]
 gi|261893118|gb|EEY39104.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus MB-451]
          Length = 317

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 110/205 (53%), Gaps = 4/205 (1%)

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVS 144
           +I + ++   + LN  + +SK A  +N    SK++++  T          +I +S ND  
Sbjct: 1   MIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFIEVGTTVKVSDLNRGIIIQSGNDAC 60

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  E ++GSE  F  LM+  A  +GM+++ + N+ GL D N  +T  D A+LG  L ++
Sbjct: 61  VAMAEHVAGSEDAFVDLMNAWASSLGMKDSHFTNSHGLDDPNLYSTPYDLALLGQALIRD 120

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
            P+ Y  +S +KF Y      N N LL  K  N+DGIKTG+T  +G+N+V+S    +  +
Sbjct: 121 VPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRL 180

Query: 264 VAVVMGMPTSQERDQKALELITSFL 288
           VAVVMG      R  ++ +L++   
Sbjct: 181 VAVVMGTDNENARKAESKKLLSYGF 205


>gi|229065500|ref|ZP_04200748.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH603]
 gi|228715818|gb|EEL67590.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH603]
          Length = 416

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 144/318 (45%), Gaps = 32/318 (10%)

Query: 43  SMASELHA--KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           + A  + A      S+I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL 
Sbjct: 8   ASAETVPAIDVEAGSAILVEANSGKILYQKNADESLAIASMTKMMSEYLVHEAVDKGKLK 67

Query: 100 LNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
            + ++ +S+ A      ++ S + L+    +T ++   A++  SAN  + A  E I+G E
Sbjct: 68  WDQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYEAMVIYSANGATIALAEEIAGKE 127

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGL--------------HDKNQITTARDQAILGILL 201
             F  +M++K+K+ GM+N  + N++GL               D+    +ARD AIL   L
Sbjct: 128 VNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPEGTTPDEKNKMSARDCAILAQRL 187

Query: 202 RKNFPQYYKYFSIRKFRYRN-----RIITNHNKLL----NKMHNIDGIKTGYTRNSGFNI 252
            ++FP+      I K  ++        +TN N +L     +   +DG+KTG T  +G   
Sbjct: 188 IQDFPKILDTAKIPKKTFQKGGKYPIDMTNFNWMLKGLIKQYEGVDGLKTGTTPEAGDCF 247

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
             ++      +++VV+   +   R  +  +L         +K  + + KD++        
Sbjct: 248 TGTVEKNGMRLISVVIKAKSHTARFDETKKLYDYGFANFEVK--KVYGKDSVVKGHETVR 305

Query: 313 LMIKKLKRTYSQFKKIDA 330
           +   K K    Q K+  +
Sbjct: 306 VANAKDKDVVVQTKQAVS 323


>gi|228985080|ref|ZP_04145247.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774567|gb|EEM22966.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 317

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 71/258 (27%), Positives = 133/258 (51%), Gaps = 16/258 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E+ AK   ++++ID +   +   +  +E   PAS++KMMT Y++ E + + K+    
Sbjct: 59  IPPEIDAK---AAMIIDASNGDIIYQQNENEAFAPASMSKMMTAYLLLENVHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM
Sbjct: 116 PVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKGFVQLM 175

Query: 163 SNKAKKIGMQN-TIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           + KAK++ M +   + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 176 NAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQ 235

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         IDG+KTG+T ++G+    + +  D  I+ VVMG 
Sbjct: 236 LAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGT 295

Query: 271 PTSQERDQKALELITSFL 288
               +R  +  +L++   
Sbjct: 296 KGKTKRFTETNKLMSYAF 313


>gi|65317476|ref|ZP_00390435.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A2012]
          Length = 443

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 77/361 (21%), Positives = 155/361 (42%), Gaps = 46/361 (12%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMISMASELHAKP------KYSSIVIDVNKNQMTGFKQ-D 72
             ++ +R I L+  +  +  +++  ++              ++I+++ N  ++   K  D
Sbjct: 7   KGMFCKRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNAD 66

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFTT 128
           E    AS+TKMM+ Y++ E +   K   + +I VS+ A   +Q+   S + L+    +T 
Sbjct: 67  ELLSIASMTKMMSEYLVHEAVDKGKFKWDQKIKVSEYAYKVSQDAXLSNVALENGGSYTV 126

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------ 182
           ++   A+   SAN  + A  E I+G E  F  +M++K+K++G++N  + N++GL      
Sbjct: 127 KELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLK 186

Query: 183 --------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNKL 230
                    D+    +A+D A L   L K++P+      I K  +R       ++N N +
Sbjct: 187 GMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWM 246

Query: 231 LNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L         +DG+KTG T  +G     ++       ++VV+   +   R  +  +L   
Sbjct: 247 LKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDY 306

Query: 287 FLEK----------KTLKHQQTHRKDNLSSTSL---KKSLMIKKLKRTYSQFKKIDAKAH 333
                          ++K Q+T R +N     +    K  +   + +   +  K + K  
Sbjct: 307 GFANFEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKEVYKTELKES 366

Query: 334 S 334
           S
Sbjct: 367 S 367


>gi|218896938|ref|YP_002445349.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           G9842]
 gi|228964967|ref|ZP_04126069.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|218545350|gb|ACK97744.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           G9842]
 gi|228794708|gb|EEM42212.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 317

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 71/258 (27%), Positives = 137/258 (53%), Gaps = 16/258 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E++AK   ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+    
Sbjct: 59  IPPEINAK---AAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM
Sbjct: 116 PVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLM 175

Query: 163 SNKAKKIGM-QNTIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             KAK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 176 DAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLRQSQ 235

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         +DG+KTG+T ++G+    + +  D+ I+ VVMG 
Sbjct: 236 LAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGT 295

Query: 271 PTSQERDQKALELITSFL 288
            +  +R  +  +L++   
Sbjct: 296 SSKTKRFTETNKLMSYAF 313


>gi|262165190|ref|ZP_06032927.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM223]
 gi|262024906|gb|EEY43574.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM223]
          Length = 317

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 110/205 (53%), Gaps = 4/205 (1%)

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVS 144
           +I + ++   + LN  + +SK A  +N    SK++++  T          +I +S ND  
Sbjct: 1   MIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFIEVGTTVKVSDLNRGIIIQSGNDAC 60

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  E ++GSE  F  LM+  A  +GM+++ + N+ GL D N  +T  D A+LG  L ++
Sbjct: 61  VAMAEHVAGSEDAFVDLMNAWASSLGMKDSHFTNSHGLDDPNLYSTPYDLALLGQALIRD 120

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
            P+ Y  +S +KF Y      N N LL  K  N+DGIKTG+T  +G+N+V+S    +  +
Sbjct: 121 VPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRL 180

Query: 264 VAVVMGMPTSQERDQKALELITSFL 288
           VAVVMG      R  ++ +L++   
Sbjct: 181 VAVVMGTDNENARKAESKKLLSYGF 205


>gi|229017289|ref|ZP_04174193.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1273]
 gi|229023465|ref|ZP_04179962.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1272]
 gi|228737818|gb|EEL88317.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1272]
 gi|228743990|gb|EEL94088.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1273]
          Length = 317

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 72/260 (27%), Positives = 135/260 (51%), Gaps = 18/260 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E+ AK   ++I+ID +  ++      +E   PAS++KMMT Y++ E + + K+H   
Sbjct: 59  IPPEIDAK---AAIIIDASNGEVIYQNNENEAVAPASMSKMMTAYLVLENIHNGKVHWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  +A    +K+ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM
Sbjct: 116 PVKISAKSAQTEGAKIPMQANDTLTVKDLYHALMIESANNSAVALAEHVAKTEKNFVQLM 175

Query: 163 SNKAKKIGMQN-TIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRK-- 216
           + KAK++ M +   + NASGL + +      TA D A L   L K++P+  +   +R+  
Sbjct: 176 NEKAKQLEMSDKAKFANASGLQEPDGSETKMTAADVAKLAYHLIKDYPEILEVTHLRQSQ 235

Query: 217 -------FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
                      N ++  +NK L  +  IDG+KTG+T ++G+    + +  D+ I+ VVMG
Sbjct: 236 LAFNNVNVTNTNEMLNKNNKALY-IEGIDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMG 294

Query: 270 MPTSQERDQKALELITSFLE 289
             +  +R  +  +L++   +
Sbjct: 295 TKSKTKRFTETNKLMSYAFQ 314


>gi|52078501|ref|YP_077292.1| D-alanyl-D-alanine carboxypeptidase [Bacillus licheniformis ATCC
           14580]
 gi|52783865|ref|YP_089694.1| DacA [Bacillus licheniformis ATCC 14580]
 gi|319648529|ref|ZP_08002744.1| DacA protein [Bacillus sp. BT1B_CT2]
 gi|52001712|gb|AAU21654.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Bacillus licheniformis ATCC 14580]
 gi|52346367|gb|AAU39001.1| DacA [Bacillus licheniformis ATCC 14580]
 gi|317389377|gb|EFV70189.1| DacA protein [Bacillus sp. BT1B_CT2]
          Length = 441

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 72/312 (23%), Positives = 144/312 (46%), Gaps = 38/312 (12%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPK--------YSSIVIDVNKNQMTGFKQDE 73
           +  +R  QL+  I+  ++ + + +    AK           ++I+++ +  ++   K  +
Sbjct: 1   MKSKRLKQLIMLIVAFAVTVGAFSPMSTAKAANDPINVDAKAAILVEASSGKILYSKNAD 60

Query: 74  PRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKTAATQNPSKLYLKEKTYFTT 128
            R P AS+ KMMT Y++ E +   K+  + +      V + +  ++ S + L++   +T 
Sbjct: 61  QRLPVASMAKMMTEYLLLEAIHEGKVKWDQKYTPDDYVYEISQDRSLSNVPLRKDGSYTV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------ 182
           ++   A    SAN  + A  E ++GSE KF  LM+ KAK++GM++  + NA+GL      
Sbjct: 121 KELYQATAIYSANAAAIALSEIVAGSESKFVELMNKKAKELGMKDFKFVNATGLENKDLH 180

Query: 183 --------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNK 229
                    ++    +ARD A+L   L  ++P+     SI K ++R        + N N 
Sbjct: 181 GKHPSGTNANEENEVSARDMALLADHLVSDYPEILDTASIAKTKFRKGTDDEMDMPNWNF 240

Query: 230 LLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS--QERDQKALEL 283
           +L     +   +DG+KTG T ++G     +       +++VV+         R ++  ++
Sbjct: 241 MLKGLVQQYEGVDGLKTGSTDSAGSCFTATAERNGMRVISVVLNAKGDLHTARFKETKKM 300

Query: 284 ITSFLEKKTLKH 295
           +    E  T+K 
Sbjct: 301 LDYAFENFTMKE 312


>gi|304406992|ref|ZP_07388646.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           curdlanolyticus YK9]
 gi|304343979|gb|EFM09819.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           curdlanolyticus YK9]
          Length = 406

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 112/251 (44%), Gaps = 13/251 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++ +IDV   ++   K  DEP   ASLTK+MT  +  E       +L  ++ VS  AA
Sbjct: 50  AKAAAIIDVESGRLLYSKNGDEPMRIASLTKIMTAIVAIE-----NGNLADKVKVSVRAA 104

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            +  S +YL+       E  +  L+ RS ND +TA  E + GS   F  +M+ KA+ IG+
Sbjct: 105 GKEGSSIYLRAGEVMKLEDMLYGLMLRSGNDAATAIAEHVGGSIDGFVKMMNEKAEWIGL 164

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN------RIIT 225
           +++ + N SGL +   ++TA D A L      N P +      R  +  N         +
Sbjct: 165 KHSRFMNPSGLDEDGHLSTANDLAKLTAYALHN-PTFAAIVKTRVKKAPNPNEQWDYSWS 223

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N NK+L      DG+KTGYT+ +   +V+S       + AV +         +  L+   
Sbjct: 224 NKNKMLAMYEGADGVKTGYTKAALRCLVSSATRNGQQLAAVTINDRNDWADHRSMLDWGF 283

Query: 286 SFLEKKTLKHQ 296
                  +  Q
Sbjct: 284 QHYVPTVIAKQ 294


>gi|229100800|ref|ZP_04231618.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-28]
 gi|228682607|gb|EEL36666.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-28]
          Length = 430

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 79/335 (23%), Positives = 150/335 (44%), Gaps = 37/335 (11%)

Query: 31  MGKILFLSIIMISMASELHAK-------PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           +  +L L+  M+   S   A+          ++I+++ N  ++   K  DE    AS+TK
Sbjct: 3   LVTVLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSIASMTK 62

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           MM+ Y++ E +   KL  + +I VS+ A      ++ S + L+    +T ++   A+   
Sbjct: 63  MMSEYLVHEAVDKGKLKWDQKIKVSEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIY 122

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           SAN  + A GE ++G E  F  +M++KAK++G++N  + N++GL               D
Sbjct: 123 SANGATIALGEAVAGKEVNFVKMMNDKAKELGLKNYKFVNSTGLTNKDLKGQHPEGTTPD 182

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RIITNHNKLL----NKMH 235
           +    +ARD AIL   L K++P+      I K  ++        + N N +L     +  
Sbjct: 183 EENKMSARDVAILAQHLIKDYPKTLDTAKIPKKVFQEGGKYPINMDNWNWMLKGLVKQYD 242

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKH 295
            +DG+KTG T  +G     ++       ++VV+   +   R  +  +L          + 
Sbjct: 243 GVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFAN--FEM 300

Query: 296 QQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
           +Q ++KD+         +   K K    Q K++ +
Sbjct: 301 KQMYKKDSSVKGQETVRVGNAKDKDVAVQTKQVVS 335


>gi|51892127|ref|YP_074818.1| D-alanyl-D-alanine carboxypeptidase-like protein [Symbiobacterium
           thermophilum IAM 14863]
 gi|51855816|dbj|BAD39974.1| D-alanyl-D-alanine carboxypeptidase-like protein [Symbiobacterium
           thermophilum IAM 14863]
          Length = 565

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 116/247 (46%), Gaps = 12/247 (4%)

Query: 48  LHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
           +      + I++DV    +        PR  AS TK+MT  +  E     + H +  + V
Sbjct: 315 IPDIAAQAYILVDVATGAVLSEYNARAPRAIASTTKIMTALLAVE-----QGHPDAVVTV 369

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
           S  AA+Q  + +YL+     T  + +  L+  S ND + A  E ++GSE+ FA  M+ +A
Sbjct: 370 SANAASQPGTSVYLRAGEQRTLRELLYGLMLVSGNDAAVAIAEHLAGSEEAFARRMNLRA 429

Query: 167 KKIGMQNTIYKNASGLHDK-NQITTARDQAILGILLRKNFPQYYKYFSIRKFR----YRN 221
            ++G QNT +  ASGL D  N  +TA D A + +   +N P +  Y  + +      + N
Sbjct: 430 AELGAQNTYFVTASGLDDDVNPYSTAEDLARISLASLRN-PLFRSYMYLPQATIPGLWGN 488

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           R +TN N  + +     G+K G+T  +G+ +V S       ++ V++G  +      +A 
Sbjct: 489 RQLTNSNLFVLRYPGATGVKNGWTEKAGYTLVASAWRDGREVMLVLLGGESRSALYAEAY 548

Query: 282 ELITSFL 288
            L+    
Sbjct: 549 SLMDHGF 555


>gi|228971991|ref|ZP_04132609.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978601|ref|ZP_04138974.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           Bt407]
 gi|228781097|gb|EEM29302.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           Bt407]
 gi|228787705|gb|EEM35666.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|326939691|gb|AEA15587.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 317

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 71/258 (27%), Positives = 137/258 (53%), Gaps = 16/258 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E++AK   ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+    
Sbjct: 59  IPPEINAK---AAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM
Sbjct: 116 PVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLM 175

Query: 163 SNKAKKIGM-QNTIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             KAK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 176 DAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLRQSQ 235

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         +DG+KTG+T ++G+    + +  D+ I+ VVMG 
Sbjct: 236 LAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGT 295

Query: 271 PTSQERDQKALELITSFL 288
            +  +R  +  +L++   
Sbjct: 296 SSKTKRFTETNKLMSYAF 313


>gi|301051750|ref|YP_003789961.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis CI]
 gi|300373919|gb|ADK02823.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 435

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 78/359 (21%), Positives = 154/359 (42%), Gaps = 46/359 (12%)

Query: 22  IYIQRNIQLMGKILFLSIIMIS---MASELHAK---PKYSSIVIDVNKNQMTGFKQ-DEP 74
           ++ +R I L+  +     +++     ++E  A       ++I+++ N  ++   K  DE 
Sbjct: 1   MFCKRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADEL 60

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQ 130
              AS+TKMM+ Y++ E +   KL  + +I VS+ A       + S + L+    +T ++
Sbjct: 61  LSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKE 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL-------- 182
              A+   SAN  + A  E I+  E  F  +M++K+K++G++N  + N++GL        
Sbjct: 121 LYEAMAIFSANGATIALAEAIASKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGM 180

Query: 183 ------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNKLLN 232
                  D+    +A+D A L   L K++P+      I K  +R       ++N N +L 
Sbjct: 181 HPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLK 240

Query: 233 K----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
                   +DG+KTG T  +G     ++       ++VV+   +   R  +  +L     
Sbjct: 241 GLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGF 300

Query: 289 EK----------KTLKHQQTHRKDNLSSTSL---KKSLMIKKLKRTYSQFKKIDAKAHS 334
                        ++K Q+T R +N     +    K  +   + +   +  K + K  S
Sbjct: 301 ANFEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKEVYKTELKESS 359


>gi|87199959|ref|YP_497216.1| Serine-type D-Ala-D-Ala carboxypeptidase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135640|gb|ABD26382.1| Serine-type D-Ala-D-Ala carboxypeptidase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 391

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 66/278 (23%), Positives = 121/278 (43%), Gaps = 15/278 (5%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYS---------SIVIDVNKNQMTGFKQDEPRY 76
           + + +   ++  ++ + + A E+      +         ++++D    +    +    R+
Sbjct: 4   KFVAVAAGLIVGAMPVQAAAPEVGLDAAMTSLPRIDAPIALLVDSGSGRTLYARDVHRRF 63

Query: 77  -PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGI 132
            PAS+TK+MT Y+ F+ ++  KL L+ +I +            S ++L  +   T  + I
Sbjct: 64  VPASITKIMTSYVAFDLVRKGKLRLDQRISIRPETFRKWKNVGSTMFLPAEAQPTVAELI 123

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ-ITTA 191
             ++T SAND      E   GS   F  LM+  A ++GM+++ +   +G  D+ Q   TA
Sbjct: 124 EGIVTVSANDACVVLAEGAVGSVPAFTRLMNEAALQLGMRDSHFNTPNGWMDEGQTYVTA 183

Query: 192 RDQAILGILLRKNFPQYYK-YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
            D A L   L   FP  YK ++      +      NHN L       DG+KTG+T  +G+
Sbjct: 184 DDLAKLSGALMTRFPDLYKRFYGHATMTWNGITQPNHNPLYGHTEGADGVKTGFTNEAGY 243

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
             V S       ++ V+ G     +R  ++  LI    
Sbjct: 244 GFVGSAERGGRRLIMVLGGYDRPIDRTNQSRALIEWGF 281


>gi|229113688|ref|ZP_04243125.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock1-3]
 gi|228669754|gb|EEL25159.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock1-3]
          Length = 425

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 81/349 (23%), Positives = 152/349 (43%), Gaps = 48/349 (13%)

Query: 34  ILFLSIIMISMASELHAK-------PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMT 85
           +L L+  M+   S   A+          ++I+++ N  ++   K  DE    AS+TKMM+
Sbjct: 1   MLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSIASMTKMMS 60

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
            Y++ E +   KL  + +I VS+ A      ++ S + L+    +T ++   A+   SAN
Sbjct: 61  EYLVHEAVDKGKLKWDQKIKVSEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIYSAN 120

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HDKNQ 187
             + A GE ++G E  F  +M++KAK++G++N  + N++GL               D+  
Sbjct: 121 GATIALGEAVAGKEVNFVKMMNDKAKELGLKNYKFVNSTGLTNKDLKGQHPEGTTPDEEN 180

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RIITNHNKLL----NKMHNID 238
             +ARD AIL   L K++P+      I K  ++        + N N +L     +   +D
Sbjct: 181 KMSARDVAILAQHLIKDYPKTLDTAKIPKKVFQEGGKYPINMDNWNWMLKGLVKQYDGVD 240

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK-------- 290
           G+KTG T  +G     ++       ++VV+   +   R  +  +L               
Sbjct: 241 GLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANFEMKQMYK 300

Query: 291 --KTLKHQQTHRKDNLSSTSL---KKSLMIKKLKRTYSQFKKIDAKAHS 334
              ++K Q+T R +N     +    K ++   + +      K + K  S
Sbjct: 301 KDSSVKGQETVRVENAKDKDVAVQTKQVVSLPVPKGSKDVYKTEFKEAS 349


>gi|206970894|ref|ZP_03231846.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH1134]
 gi|229109442|ref|ZP_04239036.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock1-15]
 gi|229178383|ref|ZP_04305752.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 172560W]
 gi|206734530|gb|EDZ51700.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH1134]
 gi|228605113|gb|EEK62565.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 172560W]
 gi|228674009|gb|EEL29259.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock1-15]
          Length = 317

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 71/258 (27%), Positives = 137/258 (53%), Gaps = 16/258 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E++AK   ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+    
Sbjct: 59  IPPEINAK---AAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM
Sbjct: 116 PVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLM 175

Query: 163 SNKAKKIGM-QNTIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             KAK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 176 DAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLRQSQ 235

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         +DG+KTG+T ++G+    + +  D+ I+ VVMG 
Sbjct: 236 LAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGT 295

Query: 271 PTSQERDQKALELITSFL 288
            +  +R  +  +L++   
Sbjct: 296 SSKTKRFTETNKLMSYAF 313


>gi|229172673|ref|ZP_04300231.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus MM3]
 gi|228610805|gb|EEK68069.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus MM3]
          Length = 317

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 71/258 (27%), Positives = 131/258 (50%), Gaps = 16/258 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E+ AK    +++ID +   +      +E   PAS++KMMT Y++ E + + K+    
Sbjct: 59  IPPEIDAKV---AMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENIHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM
Sbjct: 116 PVKMSAKAAQTEGARIQVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFVQLM 175

Query: 163 SNKAKKIGMQN-TIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           + KAK++ M +   + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 176 NAKAKELKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQ 235

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         IDG+KTG+T ++G+    + +  D  I+ VVMG 
Sbjct: 236 LAFNNINVVSTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGT 295

Query: 271 PTSQERDQKALELITSFL 288
               +R  +  +L++   
Sbjct: 296 KGKTKRFTETNKLMSYAF 313


>gi|297617197|ref|YP_003702356.1| serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145034|gb|ADI01791.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 401

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 83/302 (27%), Positives = 134/302 (44%), Gaps = 21/302 (6%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGFKQ-DEPRYPASL 80
           +  I  +   L  +++ I    +  A P     +  ++D+   Q+ G K   +PR  AS 
Sbjct: 27  KSVIGFLVLALTFALLFILSPGKAEAAPYVTSQAYCLVDLTTGQVLGGKNVMQPRPVAST 86

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           TK+MT  +  EY       L     VS  AA    S + L+ +   T E  + A +  SA
Sbjct: 87  TKVMTAILALEYA-----GLKEVAVVSPKAARTE-SGMGLRPQDKMTIEDLLKAALLESA 140

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND S    E ++GSE  FA LM+ KA  IG  +T ++NASGL DK  ++T  D A++   
Sbjct: 141 NDASVVLAEHVAGSEDMFAYLMNKKAWAIGAYHTHFENASGLPDKEHLSTCYDLAVITRY 200

Query: 201 LRKNFPQYYKYFSIRKFRYR------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
             +N   + K  + R+   +       R I N NKLL       G+KTG T  +G  ++ 
Sbjct: 201 ALRN-QVFEKLVATRQAVIKQPGYPGGRKIYNTNKLLGSYEGAFGVKTGTTDAAGKCLIG 259

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLM 314
           + +  +  +VAVV+    S +R      L+       T + +   + +      + K   
Sbjct: 260 AAQRGNRKLVAVVL---RSWDRYADCQRLLDWGFTSFT-REKVVDKSNMFKVLRVNKGTR 315

Query: 315 IK 316
           I+
Sbjct: 316 IE 317


>gi|228900575|ref|ZP_04064797.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           IBL 4222]
 gi|228859058|gb|EEN03496.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           IBL 4222]
          Length = 309

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 71/258 (27%), Positives = 137/258 (53%), Gaps = 16/258 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E++AK   ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+    
Sbjct: 51  IPPEINAK---AAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWED 107

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM
Sbjct: 108 PVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLM 167

Query: 163 SNKAKKIGM-QNTIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             KAK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 168 DAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLRQSQ 227

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         +DG+KTG+T ++G+    + +  D+ I+ VVMG 
Sbjct: 228 LAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGT 287

Query: 271 PTSQERDQKALELITSFL 288
            +  +R  +  +L++   
Sbjct: 288 SSKTKRFTETNKLMSYAF 305


>gi|219668772|ref|YP_002459207.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
           hafniense DCB-2]
 gi|219539032|gb|ACL20771.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
           hafniense DCB-2]
          Length = 423

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 79/284 (27%), Positives = 130/284 (45%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKIL--FLSIIMISMASELH--AKPKYS---SIVIDVNKNQMTGFKQ-DEPR 75
           ++R I L+  +L  F+ +  ++ A E    A P+ S   + +IDV   Q    K  D+  
Sbjct: 1   MKRIIALITLLLYFFIFVPALTAAPETQTAAPPEISGEAAYLIDVQSGQTLYSKNGDQLM 60

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGI 132
            PAS TK+MT  +  E       +    +  S+T    N    +++YL+     + E  +
Sbjct: 61  APASTTKIMTGLLGIELG-----NPEDIVTASETMLDYNTVYGTRIYLEPGEQLSLEDML 115

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
            AL+  SAND + A  E ISG+   F  LM+ +A  +G++NT +KN SGL+++  + TA 
Sbjct: 116 YALLLNSANDAAVAIAEHISGNTAAFVSLMNQRAADLGLKNTTFKNPSGLNEEGHLITAH 175

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYR------NRIITNHNKLLNKMHNIDGIKTGYTR 246
           D A +      N P +  Y   +              + N NKLL +   I G+KTGYT 
Sbjct: 176 DLARIAQAAYAN-PVFRDYIKTKSHVIPRAKENVPIEMINENKLLWRDDTITGMKTGYTS 234

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            +   +V S       ++ V++  P  +E       L+    E+
Sbjct: 235 VAQNCLVASASRDGRDVIGVILKSP-GREIYTDMQALLDYGFEQ 277


>gi|229127385|ref|ZP_04256380.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           BDRD-Cer4]
 gi|229144594|ref|ZP_04272996.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           BDRD-ST24]
 gi|296502572|ref|YP_003664272.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
 gi|228638834|gb|EEK95262.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           BDRD-ST24]
 gi|228656067|gb|EEL11910.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           BDRD-Cer4]
 gi|296323624|gb|ADH06552.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
          Length = 317

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 71/258 (27%), Positives = 137/258 (53%), Gaps = 16/258 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E++AK   ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+    
Sbjct: 59  IPPEINAK---AAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM
Sbjct: 116 PVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLM 175

Query: 163 SNKAKKIGM-QNTIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             KAK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 176 DAKAKQLKMSEHAKFANASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLRQSQ 235

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         +DG+KTG+T ++G+    + +  D+ I+ VVMG 
Sbjct: 236 LAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGT 295

Query: 271 PTSQERDQKALELITSFL 288
            +  +R  +  +L++   
Sbjct: 296 SSKTKRFTETNKLMSYAF 313


>gi|312109161|ref|YP_003987477.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
           sp. Y4.1MC1]
 gi|311214262|gb|ADP72866.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
           sp. Y4.1MC1]
          Length = 450

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 126/293 (43%), Gaps = 33/293 (11%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           FL       A +       ++I++D N  ++   K  D     AS+TKMMT Y++ E ++
Sbjct: 21  FLPFHAAKAAVDPLNIEADAAILVDANTGRILYQKNIDTVLGIASMTKMMTEYLLLEAVK 80

Query: 95  SKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
            K++  + Q   S         +  S + L++   +T  +   A+   SAN  + A  E 
Sbjct: 81  EKRVKWDQQYTPSDYVYRLSQDRALSNVPLRKDGKYTIRELYEAMAIYSANAATVAIAEI 140

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------------QITTARDQAI 196
           + GSE+ F  +M+ KA ++G++   + N++GL +++               + +AR  A 
Sbjct: 141 VGGSEQNFVKMMNEKANQLGLKGYKFVNSTGLSNEDLKGFHPEGTNQSEENVMSARSVAT 200

Query: 197 LGILLRKNFPQYYKYFSI-----RKFRYRNRIITNHNKLLNK----MHNIDGIKTGYTRN 247
           L   L K +P+  +  S      R+       + N N +L         +DG+KTGYT  
Sbjct: 201 LAYHLLKEYPEVLETASTPRKIFREGTDDQIKMDNWNWMLPGLVHAYEGVDGLKTGYTEF 260

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTS-----QERDQKALELITSFLEKKTLKH 295
           +G+    +        + VVM   ++     + R ++  +L+       ++K 
Sbjct: 261 AGYCFTGTAERNGVRFITVVMNAKSNGKSTIEARFEQTRKLLDYGFSNYSMKK 313


>gi|315644414|ref|ZP_07897547.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus vortex
           V453]
 gi|315280164|gb|EFU43457.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus vortex
           V453]
          Length = 472

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 145/296 (48%), Gaps = 31/296 (10%)

Query: 55  SSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+++I+ +  Q+      DE   PAS+TKMMT YI+ E ++  +L  +  + V + A   
Sbjct: 83  SAVLIEPSTGQVLLSVNADEALPPASMTKMMTEYIVAEKVKQGELAWDEMVSVKENAEKT 142

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L E    T E+  +A+   SAND + A  E ++GSE++F  LM++ AKK+G++ 
Sbjct: 143 VGSRIFLAEGDQHTVEELYIAMAVGSANDATVALAEHVAGSEEEFVTLMNDTAKKMGLKT 202

Query: 174 TIYKNASGLH------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
             + N++GL             DK  + +A D A+L   + ++ P + ++ +I+  ++R 
Sbjct: 203 AFFINSTGLSRADMPEKYRPAEDKETVMSAMDTALLAKFIVEDHPDFARFTAIQSHKFRP 262

Query: 222 R---IITNHNKLL-----------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           R    I N+N +L                +DG+KTG+T  + +    +       +++VV
Sbjct: 263 RDTHPIINYNWMLEANKDITNFKKYAYEGLDGLKTGHTNAAKYCFAGTAERDGMRLISVV 322

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYS 323
           MG  +   R  ++ +++    +   +K  Q       ++     S+ +KK K   +
Sbjct: 323 MGTKSEGARFVESKKVLDYGFDNFEVKEVQAAG----ATVEGFDSIEVKKGKGKQT 374


>gi|229079157|ref|ZP_04211706.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock4-2]
 gi|228704174|gb|EEL56611.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock4-2]
          Length = 317

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 71/258 (27%), Positives = 138/258 (53%), Gaps = 16/258 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E++AK   ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+    
Sbjct: 59  IPPEINAK---AAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM
Sbjct: 116 PVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLM 175

Query: 163 SNKAKKIGM-QNTIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             KAK++ M ++  ++NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 176 DAKAKQLKMSEHAKFENASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLRQSQ 235

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         +DG+KTG+T ++G+    + +  D+ I+ VVMG 
Sbjct: 236 LAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGT 295

Query: 271 PTSQERDQKALELITSFL 288
            +  +R  +  +L++   
Sbjct: 296 SSKTKRFTETNKLMSYAF 313


>gi|229102587|ref|ZP_04233291.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-28]
 gi|228680814|gb|EEL34987.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-28]
          Length = 317

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 68/249 (27%), Positives = 130/249 (52%), Gaps = 13/249 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++++ID +   +      +E   PAS++KMMT Y++ E + + K+     + +S+ AA
Sbjct: 65  AKAAMIIDASNGDVIYQHNENEAFAPASMSKMMTAYLLLESVHNGKVRWEDPVKMSEKAA 124

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +++ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM+ KAK++ M
Sbjct: 125 QTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFVQLMNAKAKQLEM 184

Query: 172 -QNTIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIIT 225
            ++  + NASGL + +      TA D A L   L K++P+  +   +R+ +  + N  + 
Sbjct: 185 SEHAKFANASGLQEPDGSETKMTAADVAKLAYHLIKDYPEILEVTHLRQSQLAFNNVNVI 244

Query: 226 NHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           + N +LNK         IDG+KTG+T ++G+    + +  D  I+ VVMG  +  +R  +
Sbjct: 245 STNDMLNKNNKSLYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGTSSKTKRFTE 304

Query: 280 ALELITSFL 288
             +L++   
Sbjct: 305 TNKLMSYTF 313


>gi|251796370|ref|YP_003011101.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           sp. JDR-2]
 gi|247543996|gb|ACT01015.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           sp. JDR-2]
          Length = 393

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 130/285 (45%), Gaps = 24/285 (8%)

Query: 24  IQRNIQLMGKILFLS--IIMISMASELHAKP------KYSSIVIDVNKNQMTGFKQ-DEP 74
           I R ++ +G  L+ +  I   S  + ++A P         S ++DV   ++   +  D+ 
Sbjct: 2   IGRQLRRIGIALWAASLIWGTSFTASVYAAPNPYHTSANGSALVDVKSGRILYSENGDQS 61

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
              ASLTK+MT  +  E+ +     L+ ++  S  A  +  S +YL+     T    +  
Sbjct: 62  MRIASLTKIMTAIVAIEHGK-----LSERVKTSSRAVGKEGSSIYLQLGEEMTLLNMLYG 116

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           L+ RS ND +TA  E + GSE+ F  LM+ KA+ +G+ +T +KN  GL  +   ++A D 
Sbjct: 117 LMLRSGNDAATAIAEHVGGSEEGFVHLMNEKAEMLGLTHTQFKNPHGLDVEGHYSSANDL 176

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRN------RIITNHNKLLNKMHNIDGIKTGYTRNS 248
           A L     +N P + +  S +     N         TN NK+L      DG+KTGYT+ +
Sbjct: 177 AKLTAYALRN-PVFAEIVSTKVKSVPNPHEKWQYSWTNKNKMLAMYEGADGVKTGYTKKA 235

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
              +V+S       + AV +     ++      +++    +   L
Sbjct: 236 LRCLVSSATRDGQQLAAVTL---NDRDDWVDHRQMLDWGFKHYPL 277


>gi|310642604|ref|YP_003947362.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Paenibacillus
           polymyxa SC2]
 gi|309247555|gb|ADO57122.1| Peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           polymyxa SC2]
          Length = 420

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 64/259 (24%), Positives = 112/259 (43%), Gaps = 13/259 (5%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQS 95
           L  +              ++ +IDV   ++    + D     ASLTK+MT  +  E+ + 
Sbjct: 45  LGAVTTEATPPALGTHAQAASLIDVTSGRIIYSAEGDRELRIASLTKIMTAIVAIEHGR- 103

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
               L  ++ VS TA  +  S L+L+     T E  +  L+ RS ND ++A  E + G+E
Sbjct: 104 ----LQDRVKVSSTAYAKEGSSLFLQMGEQMTLENMLYGLMLRSGNDAASAIAEHVGGTE 159

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           + F  LM++KA ++G+ +T + N  GL      ++A D A L      N P + +     
Sbjct: 160 EGFVHLMNDKAVQLGLNHTHFANPHGLDADGHYSSANDMARLTAYALHN-PTFARIVKTE 218

Query: 216 KFRYRN------RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
             +  N          N NK+L      DG+KTG+T+ +   +V+S   +   + AV + 
Sbjct: 219 LKKAPNPNDSWDYSWHNKNKMLRLYEGADGVKTGFTKKAFRCLVSSATREGRQLAAVTLN 278

Query: 270 MPTSQERDQKALELITSFL 288
                    + L+    + 
Sbjct: 279 DGDDWNDHARMLDYGFRYY 297


>gi|94496388|ref|ZP_01302965.1| D-alanyl-D-alanine carboxypeptidase [Sphingomonas sp. SKA58]
 gi|94424134|gb|EAT09158.1| D-alanyl-D-alanine carboxypeptidase [Sphingomonas sp. SKA58]
          Length = 387

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 74/330 (22%), Positives = 144/330 (43%), Gaps = 21/330 (6%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTK 82
           +++++ ++     ++  +I+ A     +   + +  D++   +   K  E R  PAS+ K
Sbjct: 1   MKKSLAMLLAAGLVAQPVIAAAPPYTTEAPIAYM-KDLSSGAVLYDKGGETRIPPASMAK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-----NPSKLYLKEKTYFTTEQGILALIT 137
           MMT ++ F  +Q   L L+T+  V      Q       S ++L      + E  +  ++T
Sbjct: 60  MMTAHVAFRLIQKGDLKLDTKFTVRPETWQQWHGPKAGSTMFLSAGEQVSVENLLHGIVT 119

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-QITTARDQAI 196
            S ND      E I+G+E+ F  LM+ + K++G++N+ +  ++G  D+     TA D A 
Sbjct: 120 LSGNDACVVLAEGIAGTEQAFVALMNEEGKRLGLKNSHFGTSNGWPDEGVTYVTAEDLAT 179

Query: 197 LGILLRKNFPQYYK-YFSIRKFRYRN------RIITNHNKLLNKMHNIDGIKTGYTRNSG 249
           L     +  P  YK +++ + F +            N N +L K+   DG+KTG+T  +G
Sbjct: 180 LAQATIEETPDLYKRFYATKSFTWGQTMGGSAIEQANRNPILGKIAGADGLKTGHTEEAG 239

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE----KKTLKHQQTHR--KDN 303
           +    S       +V VV G+ +   R ++++  +    +    +   K  QT    +  
Sbjct: 240 YGFTGSAEQDGRRLVMVVAGLNSFNGRIKESVRFMDWGFKAWKAQPLFKKGQTVETAEVQ 299

Query: 304 LSSTSLKKSLMIKKLKRTYSQFKKIDAKAH 333
           L S +    +  + L  T  +    D K  
Sbjct: 300 LGSATSVPLVAPQNLAVTLPRTASADVKVK 329


>gi|255318395|ref|ZP_05359628.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter radioresistens
           SK82]
 gi|262378625|ref|ZP_06071782.1| D-Ala-D-Ala-carboxypeptidase penicillin-binding protein
           [Acinetobacter radioresistens SH164]
 gi|255304387|gb|EET83571.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter radioresistens
           SK82]
 gi|262299910|gb|EEY87822.1| D-Ala-D-Ala-carboxypeptidase penicillin-binding protein
           [Acinetobacter radioresistens SH164]
          Length = 437

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 79/274 (28%), Positives = 132/274 (48%), Gaps = 14/274 (5%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDE-PRYPASL 80
           R    +  +  L    ++ A  L   P      +  ++D    Q+      E  R PASL
Sbjct: 2   RIFAYLFILFSLCCASLANARLLQVVPESVEAAAWSILDPQSGQIIAEYNSEVQRSPASL 61

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITR 138
           TKMM  YI  + +++ KL+ N  +  +        + S++YLKE    + +Q +  LI  
Sbjct: 62  TKMMVAYIALKEIENGKLNRNEILTATPVVKMVMWDESQMYLKEGEQISVDQLLAGLIVM 121

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           SAND +    E ISG+   F   M+ +A+K+GM+NT + N +G+      +TA D A+LG
Sbjct: 122 SANDAAVTLAERISGNVPAFIERMNQEAQKLGMKNTHFTNPAGITMDGHYSTAHDLALLG 181

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             L  + P Y  Y   + F Y N      N LL +   +DG+KTG+T+ +G+N+  +   
Sbjct: 182 QALVNDTPDYLNYSKQQSFTYNNHFHRATNLLLKQDATVDGLKTGFTKAAGYNLALTASR 241

Query: 259 -------KDDPIVAVVMGMPTSQERDQKALELIT 285
                   +  ++ VVMG  ++ +R + A +L+ 
Sbjct: 242 PTMNADLPNRRLIVVVMGTTSAVKRAEVAYKLLN 275


>gi|167898320|ref|ZP_02485721.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 7894]
          Length = 276

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 64/208 (30%), Positives = 112/208 (53%), Gaps = 4/208 (1%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S +V+D +  +  G    D  R PASLTK+MT Y+ F+ L+   L  +  + V+      
Sbjct: 58  SWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERDALRWDDTVTVAADDIAS 117

Query: 113 --QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             ++ +++YL           +  LI  SAND +    + I GS   FA +M++ A+++G
Sbjct: 118 VGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARRLG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           M+++ + + SG+   +  +TA D +IL   L ++FP +Y + S R F Y     TN N+L
Sbjct: 178 MRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKNRL 237

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
           L    ++DG+KTG+T  +G+ +V + + 
Sbjct: 238 LGADPSVDGMKTGHTNAAGWCMVVTAKR 265


>gi|47568352|ref|ZP_00239054.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
 gi|47555045|gb|EAL13394.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
          Length = 317

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 71/258 (27%), Positives = 131/258 (50%), Gaps = 16/258 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E+ AK   ++++ID +   +   +  +E   PAS++KMMT Y++ E + + K+    
Sbjct: 59  IPPEIDAK---AAMIIDASNGDVIYQQNENEAFAPASMSKMMTAYLLLENVHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM
Sbjct: 116 PVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFVQLM 175

Query: 163 SNKAKKIGMQN-TIYKNASGL---HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           + KAK++ M +   + NASGL          TA D A L   L K++P+  +   +R+ +
Sbjct: 176 NAKAKQLKMSDYAKFANASGLQESDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQ 235

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         IDG+KTG+T ++G+    + +  D  I+ VVMG 
Sbjct: 236 LAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGT 295

Query: 271 PTSQERDQKALELITSFL 288
               +R  +  +L++   
Sbjct: 296 KGKTKRFTETNKLMSYAF 313


>gi|30018287|ref|NP_829918.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
 gi|29893827|gb|AAP07119.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
          Length = 438

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 80/362 (22%), Positives = 152/362 (41%), Gaps = 46/362 (12%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMIS---MASELHAK---PKYSSIVIDVNKNQMTGFKQ- 71
              ++ +R I L+  +     I +     ++E  A       ++I+++ N  ++   K  
Sbjct: 1   MKGMFCKRFIALVTVLTLACSIFMPYSNASAETGAALNIEAGAAILVEANSGKILYQKNA 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A       + S + L+    +T
Sbjct: 61  DELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYT 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----- 182
            ++   A+   SAN  + A  E I+G E  F  +M++K+K++G++N    N++GL     
Sbjct: 121 VKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGVKNYKCVNSTGLTNKDL 180

Query: 183 ---------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNK 229
                     D+    +A+D A L   L K++P+      I K  +R       ++N N 
Sbjct: 181 KGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFGMSNWNW 240

Query: 230 LLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +L         +DG+KTG T  +G     ++       ++VV+   +   R  +  +L  
Sbjct: 241 MLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYD 300

Query: 286 SFLEK----------KTLKHQQTHRKDNLSSTSL---KKSLMIKKLKRTYSQFKKIDAKA 332
                           ++K Q+T R +N     +    K  +   + +      K + K 
Sbjct: 301 YGFANFEVKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKDVYKTELKE 360

Query: 333 HS 334
            S
Sbjct: 361 SS 362


>gi|228939114|ref|ZP_04101709.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228958264|ref|ZP_04119992.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228801423|gb|EEM48312.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228820537|gb|EEM66567.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 309

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 71/258 (27%), Positives = 137/258 (53%), Gaps = 16/258 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E++AK   ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+    
Sbjct: 51  IPPEINAK---AAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWED 107

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM
Sbjct: 108 PVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLM 167

Query: 163 SNKAKKIGM-QNTIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             KAK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 168 DAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLRQSQ 227

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         +DG+KTG+T ++G+    + +  D+ I+ VVMG 
Sbjct: 228 LAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGT 287

Query: 271 PTSQERDQKALELITSFL 288
            +  +R  +  +L++   
Sbjct: 288 SSKTKRFTETNKLMSYAF 305


>gi|228952354|ref|ZP_04114442.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228807350|gb|EEM53881.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 317

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 71/258 (27%), Positives = 137/258 (53%), Gaps = 16/258 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E++AK   ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+    
Sbjct: 59  IPPEINAK---AAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM
Sbjct: 116 PVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLM 175

Query: 163 SNKAKKIGM-QNTIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             KAK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 176 DAKAKQLKMSEHAKFANASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLRQSQ 235

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         +DG+KTG+T ++G+    + +  D+ I+ VVMG 
Sbjct: 236 LAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGT 295

Query: 271 PTSQERDQKALELITSFL 288
            +  +R  +  +L++   
Sbjct: 296 SSKTKRFTETNKLMSYAF 313


>gi|15614136|ref|NP_242439.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Bacillus halodurans C-125]
 gi|10174190|dbj|BAB05292.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
           [Bacillus halodurans C-125]
          Length = 382

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 66/278 (23%), Positives = 122/278 (43%), Gaps = 22/278 (7%)

Query: 26  RNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPA 78
           R   L+   LF+++ +       +  +E  +    ++I+++ +  ++   K        A
Sbjct: 2   RRFWLIAISLFVTLSVGIPERVSAETTEPASVSAQAAILMEQSTGRVLYEKDAHTSLRIA 61

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           S+TK+MT  +  E  +     ++  + VS  A     S LYL+          +  L+ R
Sbjct: 62  SITKIMTALLAIESGR-----MDEWVKVSSNAEGTEGSSLYLRAGEKIKLSDLVYGLMLR 116

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAIL 197
           S ND + A  E + GS   F  +M+ KA+++GM NT+++N  GL D ++  ++A D A+L
Sbjct: 117 SGNDAAVAIAEHVGGSMDGFVYMMNQKAEELGMSNTVFQNPHGLDDHEDHYSSAYDMALL 176

Query: 198 GILLRKNFPQYYKYFSIRKFRYRN----RIITNHNKLLNK-MHNIDGIKTGYTRNSGFNI 252
                 N   Y +    +  R  N    R+  N N+LL +      G KTGYT+ +   +
Sbjct: 177 TRYAMNN-ETYQEISGTKTHRVDNGEQIRVWKNKNRLLTQLYKYSTGGKTGYTKRAKRTL 235

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           V++    D  ++ V +  P+        + L       
Sbjct: 236 VSTASKDDLDLIVVTLNAPSD---WHDHMNLFNWAFHT 270


>gi|229069527|ref|ZP_04202816.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus F65185]
 gi|228713666|gb|EEL65552.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus F65185]
          Length = 309

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 71/258 (27%), Positives = 137/258 (53%), Gaps = 16/258 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E++AK   ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+    
Sbjct: 51  IPPEINAK---AAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWED 107

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM
Sbjct: 108 PVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLM 167

Query: 163 SNKAKKIGM-QNTIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             KAK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 168 DAKAKQLKMSEHAKFANASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLRQSQ 227

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         +DG+KTG+T ++G+    + +  D+ I+ VVMG 
Sbjct: 228 LAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGT 287

Query: 271 PTSQERDQKALELITSFL 288
            +  +R  +  +L++   
Sbjct: 288 SSKTKRFTETNKLMSYAF 305


>gi|228920684|ref|ZP_04084027.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228838985|gb|EEM84283.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 309

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 70/258 (27%), Positives = 136/258 (52%), Gaps = 16/258 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E++AK   ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+    
Sbjct: 51  IPPEINAK---AAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWED 107

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM
Sbjct: 108 PVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLM 167

Query: 163 SNKAKKIGM-QNTIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             KAK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 168 DAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLRQSQ 227

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LN+         +DG+KTG+T ++G+    + +  D+ I+ VVMG 
Sbjct: 228 LAFNNINVISTNDMLNRNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGT 287

Query: 271 PTSQERDQKALELITSFL 288
               +R  +  +L++   
Sbjct: 288 SNKTKRFTETNKLMSYAF 305


>gi|288554616|ref|YP_003426551.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudofirmus
           OF4]
 gi|288545776|gb|ADC49659.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudofirmus
           OF4]
          Length = 444

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 31/295 (10%)

Query: 29  QLMGKILFLSIIM-ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTL 86
             M  +L  ++I+  + A         S+I+++    ++   K  +   P AS+TKMM+ 
Sbjct: 12  AFMSFVLMATLIVQPTTADAALDLDAESAILVEAESGKILYQKNIDAVLPLASMTKMMSE 71

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALITRSAND 142
           Y+I E +   ++  + Q+P+S    T       S + L++   +T      ++   SAN 
Sbjct: 72  YLILEAISEGRISWDQQVPISDWVRTLSLQTALSNVPLRQDETYTVRDLYESVAIYSANA 131

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------------QI 188
            + A  E ISGSE +F  LM+ K +++G+++  + N+SGL++++                
Sbjct: 132 STIALAELISGSETQFVQLMNEKGEELGLEDFNFVNSSGLNNRDLQGNHPEGTGAEAENE 191

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLLNK------MHNI 237
            +AR  A L   L +++P+  +  SI    +         + N N +L           I
Sbjct: 192 MSARATAKLAYALLRDYPEVLETASIPMKDFQAGPGEVIPMENWNWMLPTIRPQHDYEGI 251

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           DG+KTG+T  +G     +       +++VVM   +   R  +  +L+       +
Sbjct: 252 DGLKTGFTSAAGNTFTGTAERDGMRLISVVMRTESRDARFNETRKLLDFGFNNFS 306


>gi|158320769|ref|YP_001513276.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii
           OhILAs]
 gi|158140968|gb|ABW19280.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii
           OhILAs]
          Length = 442

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 128/305 (41%), Gaps = 36/305 (11%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQD-EPRYPASLTKM 83
           I  +   L LS    SM      +P  S+   ++ID     +   K   E  YPAS TK+
Sbjct: 8   ILTIIFTLILSFSFESMVFAQGQQPDISAPYGVLIDYETGTVLYNKNAHEKAYPASTTKV 67

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT  ++ E       +L+ ++ +       + S +YL +   FT  + + AL+ RSAND 
Sbjct: 68  MTAVMVLE-----NANLDDKVTI-DYDLYVDGSSMYLLKGESFTVRELLQALLIRSANDA 121

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           + A    I+GS   F   M+ +AK++G  NT + N  GL D N +TTA D A++      
Sbjct: 122 AEALAIHIAGSVDSFVEKMNARAKELGAFNTNFTNPHGLPDTNHVTTAYDLAMISKHAM- 180

Query: 204 NFPQYYKYFSI-------RKFRYRNRIITNHNKLLN-----------------KMHNIDG 239
            F  + +            +     R   N NK L                  K   IDG
Sbjct: 181 TFDLFRETVKTEMLILEPTEQTPETRYYRNTNKFLWGTGSANHMLYNGSYINIKYDIIDG 240

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTH 299
           +KTGYT  +G  +++S    D  +++VV+G   +      +  LI    E   L     H
Sbjct: 241 LKTGYTGAAGNCLISSSFQNDHRLISVVLGAEGNHV-YSDSRRLIDYGYENFKLISLTNH 299

Query: 300 RKDNL 304
             D++
Sbjct: 300 NLDSI 304


>gi|229009524|ref|ZP_04166753.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus mycoides DSM 2048]
 gi|228751735|gb|EEM01532.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus mycoides DSM 2048]
          Length = 418

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 72/316 (22%), Positives = 141/316 (44%), Gaps = 42/316 (13%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ VS+ A 
Sbjct: 20  AGAAILVEANSGKILYQKNADELLSIASMTKMMSEYLVNEAIAKGKLKWDQKVKVSEYAY 79

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                ++ S + L+    +T ++   A+   SAN  + A  E ++G E  F  +M++K+K
Sbjct: 80  NISQDRSLSNVPLRNGESYTVKELYEAMAIYSANGATIALAEAVAGKEVDFVKMMNDKSK 139

Query: 168 KIGMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           ++G++N  + N++GL               D+    +ARD AIL   L ++FP+      
Sbjct: 140 ELGLKNYKFVNSTGLTNKDLKGHHPEGTTPDEENKMSARDVAILAQRLIQDFPKTLDIAK 199

Query: 214 IRKFRYRNRI-----ITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           I K  +R        + N N +L         +DG+KTG T  +G     ++       +
Sbjct: 200 ISKKVFREGTPDRIEMPNWNWMLKGLIKEYEGVDGLKTGSTPEAGDCFTGTIERNGMRFI 259

Query: 265 AVVMGMPTSQERDQKALELITSFLEK----------KTLKHQQTHRKDNLSSTSL----K 310
           +VV+   +   R  +  +L                  ++K ++T R +N     +    K
Sbjct: 260 SVVIKTKSHTARFDETKKLYDYGFANFEMKKMYEKGSSVKGKETVRVENAKDKDVAVQTK 319

Query: 311 KSLMIKKLKRTYSQFK 326
           +++ +   K +   +K
Sbjct: 320 QAVSLPVPKGSKDVYK 335


>gi|225175400|ref|ZP_03729395.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
           AHT 1]
 gi|225169152|gb|EEG77951.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
           AHT 1]
          Length = 426

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 83/282 (29%), Positives = 137/282 (48%), Gaps = 23/282 (8%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPK---YSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           I L+  +++L I  ++  +E  A P+    ++++ID    Q+   K   +  YPAS+TK+
Sbjct: 10  ILLVVSLIYLLINPVATWAETTAFPELNSQAAVLIDAQTGQVLFEKNMHQVLYPASITKI 69

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGILALITRSA 140
           MT  I  E       +L+  I +S+ A     +N S + L      T EQ + AL   S 
Sbjct: 70  MTGIIALEEG-----NLDDTITMSREAVFSIGRNTSHVALDVDEELTLEQALYALAIESG 124

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND +    E ISG  + FA LM+ +A + G +NT + NA GL D +  TTA D A++   
Sbjct: 125 NDAANGIAEHISGDVESFAQLMNKRAAEYGAKNTNFTNAHGLPDSDHYTTAYDMALILKQ 184

Query: 201 LRKNFPQYYKYFSIRKFRYR-------NRIITNHNKLL-NKMHN--IDGIKTGYTRNSGF 250
             KN P + + FS R +          +R   N N LL  +  +  I   KTG+T  +G 
Sbjct: 185 AVKN-PAFREIFSARNYEMPPTNKQPESRHFRNRNSLLSGRYEDAEILASKTGWTTLAGH 243

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
            +VT+ R ++  ++AVV+     + R    ++L+     + +
Sbjct: 244 TLVTAARQENRELIAVVLNSQDRRSRYDDTIKLLDYGFNQFS 285


>gi|302871919|ref|YP_003840555.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574778|gb|ADL42569.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 373

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 83/316 (26%), Positives = 138/316 (43%), Gaps = 23/316 (7%)

Query: 31  MGKILFLSIIMISMASELHAKPK-------YSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           +  ++FL I+   +A   +A  K        S+I I+    ++   K ++ + P AS TK
Sbjct: 5   VFTLIFLLIVSTELAKICYANEKNLPQVSSKSAIAIEWMTGKILFKKNEDLKLPMASTTK 64

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT  ++ E        +N +I +   A     S +YL++         +  L+  S ND
Sbjct: 65  IMTAILVLENCD-----VNKEIEIPPQAVGVPGSSMYLEKGEKLKIIDLLYGLMLSSGND 119

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A     +G  KKF  LM+ KAK++G+ NT++ +  GL      TTA D A+L     
Sbjct: 120 AAVALAIVTAGDVKKFVNLMNKKAKELGLSNTVFSSPHGLEQGQHYTTAHDLALLTAYAM 179

Query: 203 KNFPQYYKYFSI------RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           KN P + +             R  NRI+ N NK+L      +G+KTG+T+ +G  +VTS 
Sbjct: 180 KN-PIFRQIVKTTEKEVPWTTRPYNRILRNKNKMLRLYPGAEGVKTGFTKKAGRCLVTSA 238

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT--HRKDNLSSTSLKKSLM 314
              D  ++ VV+         +K L+      +   L   +    + +N     +K    
Sbjct: 239 CRDDFRVICVVLNAQDMWNDTRKILDYSYRNFKVLKLPPGEIGYVKVNNGKMGWVKVGTT 298

Query: 315 IKKLKRTYSQ-FKKID 329
            +K     S  F KID
Sbjct: 299 HQKYWVVDSDCFPKID 314


>gi|229029678|ref|ZP_04185753.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1271]
 gi|228731620|gb|EEL82527.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1271]
          Length = 317

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 69/258 (26%), Positives = 131/258 (50%), Gaps = 16/258 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E+ AK   ++++ID +   +      +E   PAS++KMMT Y++ E + + K+    
Sbjct: 59  IPPEIDAK---AAMIIDSSNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ +EK F   M
Sbjct: 116 PVKMSVKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFVQRM 175

Query: 163 SNKAKKIGMQN-TIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           + KAK++ M +   + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 176 NEKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQ 235

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         IDG+KTG+T ++G+    + +  +  I+ VVMG 
Sbjct: 236 LAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGNTRIITVVMGT 295

Query: 271 PTSQERDQKALELITSFL 288
               +R  +  +L++   
Sbjct: 296 KGKTKRFTETNKLMSYAF 313


>gi|312135096|ref|YP_004002434.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor
           owensensis OL]
 gi|311775147|gb|ADQ04634.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           owensensis OL]
          Length = 382

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 77/286 (26%), Positives = 134/286 (46%), Gaps = 19/286 (6%)

Query: 20  GSIYIQRNIQLMGKILFLS--IIMISMASE--LHAKPKYSSIVIDVNKNQMTGFKQDEPR 75
           G ++++  + ++  ++ ++  + +   ASE  L      S+I I+    ++   K ++ +
Sbjct: 4   GVLFLKVRVFVLILLMIVNTEVAVTCYASEKNLPQVSSKSAIAIEWMTGKILFRKNEDLK 63

Query: 76  YP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
            P AS TK+MT  ++ E        +N +I +   A     S +YL++         +  
Sbjct: 64  LPMASTTKIMTAILVLENCD-----VNKEIEIPPQAVGVQGSSMYLEKGEKLKIIDLLYG 118

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           L+  S ND + A     +G  KKF  LM+ KAK++G+ NT++ +  GL      TTA D 
Sbjct: 119 LMLSSGNDAAVALAIVTAGDVKKFVNLMNKKAKELGLSNTVFSSPHGLEQGQHYTTAHDL 178

Query: 195 AILGILLRKNFPQYYKYFSI------RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
           A+L     KN P + +             R  NRI+ N NK+L      +G+KTG+T+ +
Sbjct: 179 ALLTAYAMKN-PIFRQIVKTTEKEVPWTTRPYNRILRNKNKMLRLYPGAEGVKTGFTKKA 237

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
           G  +VTS    D  ++ VV+         +K L+   S+   K LK
Sbjct: 238 GRCLVTSACRDDFRVICVVLNAQDMWNDTRKILDY--SYRNFKVLK 281


>gi|42781590|ref|NP_978837.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987]
 gi|42737513|gb|AAS41445.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987]
          Length = 434

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 79/341 (23%), Positives = 155/341 (45%), Gaps = 36/341 (10%)

Query: 22  IYIQRNIQLMGKI-LFLSIIMISMASELHAKP-----KYSSIVIDVNKNQMTGFKQ-DEP 74
           ++ ++ I ++  + LF SI++ S ++     P       S+I+++ N  ++   K  DE 
Sbjct: 1   MFYKKFIVIVTVLTLFCSIVVTSGSASAETVPVLDVEAGSAILVEANSGKILYEKNADES 60

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQ 130
              AS+TKMM+ Y++ E ++  KL  + ++ +S+ A      ++ S + L+    +T ++
Sbjct: 61  LAIASMTKMMSEYLVHEAVEKGKLKWDQKVKISEYAYTISQDRSLSNVPLENSGSYTVKE 120

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL-------- 182
              A+   SAN  + A  E I+G E  F  +M++K+K+ GM+N  + N++GL        
Sbjct: 121 LYEAMAIYSANGATIALVEEIAGKEADFVKMMNDKSKEFGMKNYKFVNSTGLTNYDLKGH 180

Query: 183 ------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RIITNHNKLL 231
                  D+    +ARD AIL   L ++FP+      I K  ++        + N N +L
Sbjct: 181 HPEGTTPDEKNKMSARDCAILAQRLVQDFPKMLDTAKIPKKTFQKGGKYPIDMVNFNMML 240

Query: 232 N----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
                +   +DG+KTG T  +G     ++      +++VV+   +   R  +  +L    
Sbjct: 241 KGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKANSHTARFDETKKLYDYG 300

Query: 288 LEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
                +K+   + K ++        +   K K    Q K+ 
Sbjct: 301 FANFEVKN--IYGKGSVVKGHETVRVANAKDKDVIVQTKQA 339


>gi|253577333|ref|ZP_04854650.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843233|gb|EES71264.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 469

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 68/263 (25%), Positives = 131/263 (49%), Gaps = 27/263 (10%)

Query: 55  SSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++I+++    Q+      ++P  PAS+TKMMT YI+ E ++  K   +  + V + AA  
Sbjct: 79  AAILLEPVSGQILLNVNGEQPLPPASMTKMMTEYIVAELVKQGKFSWDDVVTVGRNAAQT 138

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+++L E    T E+   A+   SAND + A  E+++GSE+ F  +M+++AK++GM+ 
Sbjct: 139 IGSRIFLAEGDQHTVEELYTAMAIASANDATVALAEYVAGSEQAFVKMMNDEAKRMGMKT 198

Query: 174 TIYKNASGL------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
             + N++GL              K  + +A D AIL   +  + P + ++ +I+  ++R+
Sbjct: 199 AHFANSTGLDIADMPAEFRPTDGKETVMSALDAAILAKYIVTDHPDFTRFTTIQSKKFRD 258

Query: 222 R---IITNHNKLLN-----------KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           R    + N N +L                +DG+KTG+T N+G     +       +++VV
Sbjct: 259 RDTAPMVNLNWMLEANKNVTNFKQFAYEGLDGLKTGHTSNAGNCFTGTAVRNGMRLISVV 318

Query: 268 MGMPTSQERDQKALELITSFLEK 290
           MG  + + R  +  +++      
Sbjct: 319 MGTASDKARFVETRKVLDYGFNN 341


>gi|118444410|ref|YP_878580.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT]
 gi|118134866|gb|ABK61910.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT]
          Length = 410

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 130/285 (45%), Gaps = 23/285 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPAS 79
           +++ +  +   +    +++     +   P  S+   +++D N  Q+   K  D P  PAS
Sbjct: 1   MRKLLTFIWIFIITFSVIVYDTKAIDTPPTVSADGVVLMDKNTGQILYSKNLDSPYPPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
            TK+MT  +  E     K +L+  + + K A   + SK+Y+ E    T    + +L+ +S
Sbjct: 61  TTKIMTALLALE-----KCNLDDVVTIGKNATDIDGSKIYIFEGEKLTIRDLLYSLLLQS 115

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AND + A  E ISGS ++F  LM+ +AK++G +NT + N  GL+D    T+ARD A++  
Sbjct: 116 ANDCAVALAEHISGSTQEFVKLMNTRAKELGCKNTNFVNPHGLYDDKHRTSARDLALILR 175

Query: 200 LLRKNFPQYYKYFSIRKF-------RYRNRIITNHNKLLNK-----MHNIDGIKTGYTRN 247
            L K    + K  + + +           R I N +KL+ K         +G KTGYT  
Sbjct: 176 ELSK-HEDFKKIATTQVYVINPTNKEPNKRFIGNKDKLVLKRSKCYYEGCEGGKTGYTIQ 234

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           S  + V +    +  ++AV++            + L        T
Sbjct: 235 SKHSFVATATRDNKSLIAVLLH-DAKHTYWDDVINLFNFGFSNYT 278


>gi|293609789|ref|ZP_06692091.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828241|gb|EFF86604.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 439

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 73/272 (26%), Positives = 128/272 (47%), Gaps = 16/272 (5%)

Query: 30  LMGKILFLSIIMISM--ASELHAKP----KYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
            +      SI   ++  A+ L+  P      +  ++D    Q+         R PASLTK
Sbjct: 4   FLSLFTLFSIFCTTLTNAALLNIAPESVEAAAWTIVDTQSGQIIAEHNSHVQRAPASLTK 63

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSK--TAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           MM  YI  + +++ KL     I  +   +    + S++YLK     + +Q +  LI  SA
Sbjct: 64  MMVAYIALKEIKAGKLKKEEIITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIVMSA 123

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND +    E ISG   +F   M+ +A+ +GM++T + N +G+   +  TTA D ++L   
Sbjct: 124 NDAAVTLAEKISGDVPRFVQRMNQEAQALGMKDTHFSNPAGITMPDHFTTAHDLSLLSQA 183

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK- 259
           + K  P+Y  Y  +  F Y  R     N  L     +DG+KTGYT+ +G+N+  +     
Sbjct: 184 VIKQTPEYLHYSKMPNFSYNQRFHHATNLALKYDPYVDGLKTGYTKAAGYNLALTASRPS 243

Query: 260 ------DDPIVAVVMGMPTSQERDQKALELIT 285
                    ++ +V+G P++ +R + A +L+ 
Sbjct: 244 FSSDLTQRRLLVIVLGTPSAVKRAEIADKLMN 275


>gi|168187889|ref|ZP_02622524.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum C str.
           Eklund]
 gi|169294277|gb|EDS76410.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum C str.
           Eklund]
          Length = 410

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 78/339 (23%), Positives = 144/339 (42%), Gaps = 33/339 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPAS 79
           +++ +  +   +    +++     +   P  S+   +++D N  Q+   K  D    PAS
Sbjct: 1   MRKLLTFIWIFIITFSVIVYDTKAIDTPPTVSADGVVLMDKNTGQILYSKNLDTQYPPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
            TK+MT  +  E     K  L+  + + K A   + SK+Y+ E    T    + AL+ +S
Sbjct: 61  TTKIMTALLAIE-----KCKLDDVVTIGKNATNVDGSKIYIFEGEKLTVRDLLYALLLQS 115

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AND + A  E ISGS ++F  LM+ +AK++G +NT + N  GL+D    T+ARD A++  
Sbjct: 116 ANDCAVALSEHISGSTQEFVKLMNTRAKELGCKNTNFVNPHGLYDDKHRTSARDLALILR 175

Query: 200 LLRKNFPQYYKYFSIRKFRY-------RNRIITNHNKLLNK-----MHNIDGIKTGYTRN 247
            L K    + K  + + +           R I N +KL+ K         +G KTGYT  
Sbjct: 176 ELSK-HEDFKKIATTQIYTINPTNKEPNKRYIWNKDKLVQKKSKCYYEGCEGGKTGYTIQ 234

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT----------LKHQQ 297
           S  + V +    +  ++A+++            + L        T          L + +
Sbjct: 235 SKHSFVATATRDNKGLIAILLH-DAKHTYWDDVINLFNFGFNNYTREKLYSKDQCLYNYK 293

Query: 298 THRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
             +   +   + K    ++K         K++  + S +
Sbjct: 294 IDKGSTVPLIATKDFYYLRKKGDKDIPQLKVNDISLSNK 332


>gi|229161434|ref|ZP_04289415.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus R309803]
 gi|228621971|gb|EEK78816.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus R309803]
          Length = 416

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 142/306 (46%), Gaps = 30/306 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             S+I+++ N  ++   K  DE    AS+TKMM+ Y++ E +++ KL  + ++ +S+ A 
Sbjct: 20  AGSAILVEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVENGKLKWDQKVKISEYAY 79

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K
Sbjct: 80  KISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIAGKEADFVKMMNDKSK 139

Query: 168 KIGMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           + GM+N  + N++GL               D+    +ARD AIL   L ++FP+      
Sbjct: 140 EFGMKNYKFVNSTGLTNHDLKGHHPEGTTPDEKNKMSARDCAILAQRLIQDFPKILDTAK 199

Query: 214 IRKFRYR-----NRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           I K  ++        +TN N +L     +   +DG+KTG T  +G     ++      ++
Sbjct: 200 IPKKTFQQGGKYPIDMTNFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLI 259

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
           +VV+   +   R  +  +L          + ++ + KD + + +    +   K K    Q
Sbjct: 260 SVVIKANSHAARFDETKKLYDYGFAN--FEMKKVYGKDAVVNGNETVRVANAKDKDVVVQ 317

Query: 325 FKKIDA 330
            K+  +
Sbjct: 318 TKQAVS 323


>gi|304406838|ref|ZP_07388493.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           curdlanolyticus YK9]
 gi|304344371|gb|EFM10210.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           curdlanolyticus YK9]
          Length = 415

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 127/295 (43%), Gaps = 16/295 (5%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYII 89
           + K L  +    ++A +       S+I++D     +   K   +  YPAS+TK++T  + 
Sbjct: 25  IAKDLASAGEQTALARKPPELLAESAILMDRRTGTILYEKNASQRMYPASITKIVTAIVA 84

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            E       ++   + VSK A  +  +++YL+E       Q +L ++  S ND +TA  E
Sbjct: 85  LESA-----NVEDVVTVSKEARGEEGTRVYLEEGEQMKLWQLLLGMMVNSGNDAATAIAE 139

Query: 150 FISGSEKKFAILMSNKAKK-IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
            + GS++KFA  M+   ++     ++ ++N SGL D    TTA D A +      N  ++
Sbjct: 140 HVDGSKEKFAEHMNAWIREKANAYDSQFRNPSGLPDPEHYTTAEDMAKITQYAMSN-EKF 198

Query: 209 YKYFSIRKFRYRNRII----TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
            +    +K  +  +       NHNKLL       G+K GYT  +G  +V S       ++
Sbjct: 199 RELVGTKKVIWNGQTWQTVLVNHNKLLGTYDGATGVKNGYTTLAGSTLVASAERNGMELI 258

Query: 265 AVVMGMPTSQERDQKALELITSFL----EKKTLKHQQTHRKDNLSSTSLKKSLMI 315
            V++  P+S +       ++         K      +T+  D   + +      I
Sbjct: 259 GVILKAPSSNQMYADMRSILDYGFAAFEPKLLFDENETYEMDGAPAVAYTADEAI 313


>gi|229021621|ref|ZP_04178209.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH1272]
 gi|228739667|gb|EEL90075.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH1272]
          Length = 428

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 77/345 (22%), Positives = 150/345 (43%), Gaps = 49/345 (14%)

Query: 31  MGKILFLSIIMISMASELHAK-------PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           M  +L ++  M+   S   A+          ++I+++ N  ++   K  DE    AS+TK
Sbjct: 1   MVTVLTIACSMLVPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSIASMTK 60

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           MM+ Y++ E +   KL  + ++ VS+ A      ++ S + L+    +T ++   A+   
Sbjct: 61  MMSEYLVNEAVAKGKLKWDQKVKVSEYAYNISQDRSLSNVPLRNGESYTVKELYEAMAIY 120

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           SAN  + A  E ++G E  F  +M++K+K+ G++N  + N++GL               D
Sbjct: 121 SANGATIALAEAVAGKEVDFVKMMNDKSKEFGLKNYKFVNSTGLTNKDLKGHHPEGTTPD 180

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNK----MH 235
           +    +ARD AIL   L ++FP+      I K  +R        + N N +L        
Sbjct: 181 EENKMSARDVAILAQRLIQDFPKTLDIAKISKKVFREGTPDRIEMPNWNWMLKGLIKEYE 240

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK----- 290
            +DG+KTG T  +G     ++       ++VV+   +   R  +  +L            
Sbjct: 241 GVDGLKTGSTPEAGDCFTGTIERNGMRFISVVIKTNSHTARFDETKKLYDYGFANFEMKK 300

Query: 291 -----KTLKHQQTHRKDNLSSTSL----KKSLMIKKLKRTYSQFK 326
                 ++K ++T R +N     +    K+++ +   K +   +K
Sbjct: 301 MYEKGSSVKGKETVRVENAKDKDVAVQTKQAVSLPVPKGSKDVYK 345


>gi|229543957|ref|ZP_04433016.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           coagulans 36D1]
 gi|229325096|gb|EEN90772.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           coagulans 36D1]
          Length = 373

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 133/296 (44%), Gaps = 17/296 (5%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYII 89
           +  ++F ++   + A++  +    S+I++D +  ++   K   EPR  AS+TK+MT  + 
Sbjct: 10  LAVLVFSALPPGAAAADTPSVQAKSAILMDQDTGRILYEKDAYEPRSIASITKIMTALVA 69

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            E  +     ++ +  VS  A     S LYLK    +  +  +  L+ RS ND +    E
Sbjct: 70  IESGK-----MDKEAVVSNRAVRTEGSSLYLKPGDKWKMKDLVYGLMLRSGNDAANVIAE 124

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--QITTARDQAILGILLRKNFPQ 207
            + GS + F  +M+ KAK+IGM +T + N +GL D      +TA D A+L     +N  +
Sbjct: 125 NVGGSIEGFVFMMNEKAKEIGMHDTHFANPNGLEDPGGRHYSTAYDMALLMKYAMQN-KE 183

Query: 208 YYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           + K    + ++       N N+LL  K     G KTGYT+ +   +VT+     + ++AV
Sbjct: 184 FRKITGTKFYK----GWRNKNRLLTEKYRYCTGGKTGYTKAARRTLVTTATKGGENLIAV 239

Query: 267 VMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTY 322
            +      +      E   S  ++K +  +          T   K  +  K   TY
Sbjct: 240 TLNDSDDWDDHIAMYEYGFSQYDRKRIVEEGPVA---AVRTKYLKQHVYVKRDITY 292


>gi|254228127|ref|ZP_04921557.1| beta-lactamase [Vibrio sp. Ex25]
 gi|151939623|gb|EDN58451.1| beta-lactamase [Vibrio sp. Ex25]
          Length = 249

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 119/238 (50%), Gaps = 8/238 (3%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMT 85
               +  + + +  ++  A EL ++     +++D +  ++   +    R  PASLTK+MT
Sbjct: 15  GFAAVSSLAYAAPTVVPNAPELSSR---GYVLMDFHTGKVLVERDAHKRLNPASLTKLMT 71

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSAND 142
            Y+  + + +  + L+ ++ +S+ A  +N    SK++++  T  +       L+ +S ND
Sbjct: 72  AYVAGQEINAGNITLDDEVVISRNAWAKNFPDSSKMFIEVNTSVSLSDLYRGLVVQSGND 131

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            S A  E ++GSE  F  LM++ A K+ + NT + N  GL      +T  D A LG  + 
Sbjct: 132 ASVAIAEHVAGSESGFVSLMNSWAAKLELNNTAFTNPHGLDSDGLYSTPYDIAKLGQAII 191

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           ++ P  Y  +S   F Y      N N LL  +  N+DG+KTGYT  +G+++ TS    
Sbjct: 192 RDLPDIYPLYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYSLATSATQG 249


>gi|326387759|ref|ZP_08209365.1| Serine-type D-Ala-D-Ala carboxypeptidase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207805|gb|EGD58616.1| Serine-type D-Ala-D-Ala carboxypeptidase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 398

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 68/270 (25%), Positives = 120/270 (44%), Gaps = 14/270 (5%)

Query: 33  KILFLSIIMISMASELHAKPKYS--------SIVIDVNKNQMTGFKQDEPRY-PASLTKM 83
            +L       + A    A P+ +        ++++DVN  ++   +    R+ PASLTK+
Sbjct: 15  SVLAQGAPASTGAPAAPASPESTMPQVTAPIAMMVDVNSGRVLFARDPHRRFVPASLTKI 74

Query: 84  MTLYIIFEYLQSKKLHLNTQIPV---SKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           MT Y+ FE +++ KL L+ +  +   +        S ++L   +  +    +  ++T SA
Sbjct: 75  MTSYVAFELIKAGKLRLDQKFVMRPETFHKWHGVGSTMFLGNNSSTSVADLLEGIVTVSA 134

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-QITTARDQAILGI 199
           ND      E I+GS   F  +M+ +AKKIGM+++ Y   +G  D+     +A D   L  
Sbjct: 135 NDACVVLAEGIAGSVPGFTAMMNAEAKKIGMRDSHYNTPNGWMDQGETYVSAADLVALST 194

Query: 200 LLRKNFPQYYK-YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
            L    P  YK ++      +      NHN L       DG+KTG+T  +G+  V S+  
Sbjct: 195 ALITRHPDLYKRFYGHDHATFNGIAQENHNPLYGHTPGADGVKTGFTGEAGYGFVGSVER 254

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFL 288
               ++ VV G     +R  ++   +    
Sbjct: 255 GGRRVIMVVAGYGRPNDRADQSRTFVEWAF 284


>gi|229155565|ref|ZP_04283673.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus ATCC
           4342]
 gi|228627883|gb|EEK84602.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus ATCC
           4342]
          Length = 317

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 71/258 (27%), Positives = 132/258 (51%), Gaps = 16/258 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E+ AK   + ++ID +   +   +  +E   PAS++KMMT Y++ E + + K+    
Sbjct: 59  IPPEIDAK---AVMIIDASNGDIIYQQNENEAFAPASMSKMMTAYLLLENVHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM
Sbjct: 116 PVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFVQLM 175

Query: 163 SNKAKKIGMQN-TIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           + KAK++ M +   + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 176 NAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQ 235

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         IDG+KTG+T ++G+    + +  D  I+ VVMG 
Sbjct: 236 LAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGT 295

Query: 271 PTSQERDQKALELITSFL 288
               +R  +  +L++   
Sbjct: 296 KGKTKRFTETNKLMSYAF 313


>gi|255020045|ref|ZP_05292118.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC
           51756]
 gi|254970574|gb|EET28063.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC
           51756]
          Length = 381

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 126/299 (42%), Gaps = 17/299 (5%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKY------------SSIVIDVNKNQMTGFKQDE-PR 75
            L G IL   +   ++A    +                S +++D     +   K  +   
Sbjct: 1   MLAGLILATGLAAKALAGTPTSATPALVPPPPALPGVKSYVLMDFRTGAILAAKNPQLQL 60

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
            PASLTK+MT Y+ +E L   +L  + +IPVS  A     S ++++     T +Q +  L
Sbjct: 61  PPASLTKLMTAYLSYEALADGRLRWHERIPVSTVAWHTGGSSMFIQPNLPVTVDQLMHGL 120

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I  S ND + A  + ++GS   F   M+  A ++G+    Y +  GL       +A + A
Sbjct: 121 IIDSGNDAAVALAQAVAGSRAAFVDEMNATAAQLGLTGAHYTDVDGLPHPGLHLSAMNIA 180

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
            L   L   +PQ  +   I+ +RY +    + N  L    ++DG+KTG+T+ +G  + T+
Sbjct: 181 ELSRDLIARYPQVLQISRIQYYRYNHITQRSWNPALFGHPHVDGLKTGHTQAAGHCMDTT 240

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFL----EKKTLKHQQTHRKDNLSSTSLK 310
           +      ++AVVMG  +        + L         + + LK  Q       ++    
Sbjct: 241 IDRHGRRLIAVVMGAQSWPAGVHDVMSLFDYAYRFSHDHELLKAGQIVGTYKDAALDPD 299


>gi|154248244|ref|YP_001419202.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter
           autotrophicus Py2]
 gi|154162329|gb|ABS69545.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter
           autotrophicus Py2]
          Length = 399

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 122/243 (50%), Gaps = 6/243 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I++D     +   K  + R  P +L K+MT  ++F  L++ K+ L+T   VS  A 
Sbjct: 33  APSAILVDYETGTILFEKDADRRIAPGTLAKVMTADVVFSQLKAGKIALDTPFTVSVNAW 92

Query: 112 TQ-----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
            +       + ++ +        + +  ++  S ND + A  E + G+E +F+  M+ +A
Sbjct: 93  RRGGGPSGGAAMFAEVNKPAPVGELLAGMLVVSGNDAAIALAEGVGGTETEFSQQMTERA 152

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
           K IGM N+ ++NA+G  D  Q +TARD ++L   + + +P YY  F+     +      N
Sbjct: 153 KAIGMANSEFRNATGFADPGQFSTARDLSVLAQHVIRTYPDYYPVFARTSIEWSRIKQRN 212

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            N LL+     DG++ G+ ++ G++ + S       ++ VV+   T +ER ++A +L+  
Sbjct: 213 RNVLLDAGIGADGLQIGWVKDVGYHALGSAVQNGQRLIVVVLAAKTEKERLEEAKKLLEW 272

Query: 287 FLE 289
             +
Sbjct: 273 GFQ 275


>gi|116252224|ref|YP_768062.1| penicillin-binding protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115256872|emb|CAK07966.1| putative penicillin-binding protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 397

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 121/239 (50%), Gaps = 6/239 (2%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + +I+     +   K  D+   PASL K+MT+ ++FE L   ++ L+T+ PVS+ A    
Sbjct: 36  AYMIEATTGTVLLAKNEDQGFSPASLAKLMTMDLVFEALTKGQITLDTEYPVSEYAWRTG 95

Query: 115 PS-----KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            +      ++   K+    E  I  +  + AND      E ++GSE++FA+ M+ +A+++
Sbjct: 96  GAPSRAATMFASLKSRVRVEDLIKGVAIQGANDSCIILAEGMAGSEQQFAVSMTRRAREL 155

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM+   + N++GL D     TAR+   L   L++ +P  Y YF+   F +      N N 
Sbjct: 156 GMEKAEFGNSTGLPDGKSKVTAREMVTLAAALQQTYPNLYPYFAQPDFEWNKIFQRNRNP 215

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           LL      DG+ TG+T   G++IV S+      +   + G+ + +ER ++A  ++   L
Sbjct: 216 LLGLDIGADGLATGFTEGEGYSIVASVERDGRRLFVALAGIASDKERTEEAKRVLEWGL 274


>gi|330838298|ref|YP_004412878.1| Serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena
           ATCC 35185]
 gi|329746062|gb|AEB99418.1| Serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena
           ATCC 35185]
          Length = 379

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 110/242 (45%), Gaps = 16/242 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++I+++    ++   K  + R YPAS+TKMMT  +    ++S +  L   + ++  AA  
Sbjct: 134 AAILMNARTGEVLYEKNGDKREYPASMTKMMTCIL---SVESGRADL--AVTITPFAADV 188

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +++  +             ++  S N  + A  E + GSE +FA +M+ KA++IG  +
Sbjct: 189 ETTRV--RPGEQARLRDLTRQMMLISDNGAALAIAETLGGSEAQFAAMMNRKAREIGAFH 246

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-------RNRIITN 226
           T + N +G+ D N  +TA D A++     +N P++ K    +                 N
Sbjct: 247 THFVNPNGMPDANHYSTAHDIALIAAYGLRN-PEFRKIVGTKASTIYYLQPAGYKTYCEN 305

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            N LL       G+KTG+TR +G  +  S    D  ++AVVM       R  +A  L+  
Sbjct: 306 TNALLYSYPGCTGLKTGWTRAAGGCLAASAVRGDTELIAVVMHSDDEDTRASEAAALLDY 365

Query: 287 FL 288
             
Sbjct: 366 GF 367


>gi|147678303|ref|YP_001212518.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum
           thermopropionicum SI]
 gi|146274400|dbj|BAF60149.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum
           thermopropionicum SI]
          Length = 371

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 76/257 (29%), Positives = 118/257 (45%), Gaps = 22/257 (8%)

Query: 46  SELHAKPKY---SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLN 101
             + A P     ++I++DV   Q+   K    R  PASLTK+MT  +  E       +L 
Sbjct: 19  PAVAAPPAITADAAILMDVQTGQVYYAKNHYRRAEPASLTKIMTAVVALE-----NGNLG 73

Query: 102 TQIPVSKTAATQN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
             + V   AA  +  S + L++    T E+ + A +  SAND + A  E + GS ++F  
Sbjct: 74  DVVTVGGRAAAVSMGSIIDLRKGEKITLEELLKAALISSANDSTVAIAEHVGGSHERFIK 133

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FR 218
           +M+ KA  +G+  T Y N +G HD N  TTARD A+L        P++ +    ++   R
Sbjct: 134 MMNAKAAVLGLFGTRYANTNGYHDPNHYTTARDLAVLTRCAL-GHPKFNELVQTKEAAVR 192

Query: 219 Y-----RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           +     R   I N N+LL      IDG+KTG T  +G  +  S   +   ++AVV+    
Sbjct: 193 WVEPPEREEKIINSNRLLFGGYEGIDGVKTGTTPMAGNCLAASATREGRRLIAVVLHSDN 252

Query: 273 SQERDQKALELITSFLE 289
              R Q  + L      
Sbjct: 253 ---RYQDCVRLFEYGFN 266


>gi|294676801|ref|YP_003577416.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacter capsulatus SB
           1003]
 gi|294475621|gb|ADE85009.1| D-alanyl-D-alanine carboxypeptidase-2 [Rhodobacter capsulatus SB
           1003]
          Length = 386

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 122/249 (48%), Gaps = 7/249 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++ V D+    +   K  D    PAS++K+MTL ++FE L   ++ L+T   VS  A 
Sbjct: 27  ARTAWVYDLTTQTVLLEKDADVAVPPASMSKLMTLNMLFEALSEGRVTLDTTFAVSTKAK 86

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S ++L E    +  + +  ++  S ND      E ++GSE  FA  M+ +AK +GM
Sbjct: 87  QMGGSTMFLNEMDRPSVRELMQGVVINSGNDACVVVAEGLAGSEGAFAAGMTERAKMLGM 146

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII---TNHN 228
             + + NASG    +Q  +  D  IL + L   FPQYY  FS  +F Y+NR      N N
Sbjct: 147 TRSTFANASGWPHPDQRMSMHDLGILAVRLITQFPQYYPLFSETQFNYKNRAPANAHNRN 206

Query: 229 KLLN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            LL       + DG+KTG+T  +G+ +V S    D  IV V+ G+ +  +R  +A  +  
Sbjct: 207 PLLKIPAADWHADGLKTGHTEEAGYGLVGSAVMGDRRIVFVISGLASEADRASEAEAVAN 266

Query: 286 SFLEKKTLK 294
               +  +K
Sbjct: 267 WAFRQFVMK 275


>gi|254780435|ref|YP_003064848.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040112|gb|ACT56908.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 336

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 89/274 (32%), Positives = 145/274 (52%), Gaps = 3/274 (1%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTK 82
           +++ + ++   +  +I      +E +  P Y+  ++D N   +      D P  PASLTK
Sbjct: 1   MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTK 58

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT Y++F +L+ KK  L T I +SK A+   PS    K+ +  T +  +  LI +SAND
Sbjct: 59  LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
           ++ A  E +  +EKKF   M+N +K +G+  T + NA G+      TTARD AIL   ++
Sbjct: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
            +FPQY  YF I+    + +   N N  +      DG+KTG+T  SGFNIV S    D  
Sbjct: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLKHQ 296
           ++AV++G      R++ +  L++     KT + +
Sbjct: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272


>gi|229190080|ref|ZP_04317086.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus ATCC
           10876]
 gi|228593409|gb|EEK51222.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus ATCC
           10876]
          Length = 317

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 71/258 (27%), Positives = 136/258 (52%), Gaps = 16/258 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E++AK   ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+    
Sbjct: 59  IPPEINAK---AAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM
Sbjct: 116 SVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLM 175

Query: 163 SNKAKKIGM-QNTIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             KAK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 176 DAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLRQSQ 235

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         +DG+KTG+T ++G+    + +  D+ I+ VVMG 
Sbjct: 236 LAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGT 295

Query: 271 PTSQERDQKALELITSFL 288
               +R  +  +L++   
Sbjct: 296 SNKTKRFTETNKLMSYAF 313


>gi|182414513|ref|YP_001819579.1| Serine-type D-Ala-D-Ala carboxypeptidase [Opitutus terrae PB90-1]
 gi|177841727|gb|ACB75979.1| Serine-type D-Ala-D-Ala carboxypeptidase [Opitutus terrae PB90-1]
          Length = 341

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 81/290 (27%), Positives = 137/290 (47%), Gaps = 24/290 (8%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPK----YSSIVIDVNKNQMTGFKQDEPR-Y 76
           I+ +R          +   M+++A+   A         +IV D     +   +  +    
Sbjct: 2   IFARRLSCAALVCAVMLTPMLALAAPKKAPKAEPTFKGAIVTDAATGNVLLEQNADVVTP 61

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS+TK+MT  ++ + L+S  L L T + +    A    ++++L  +  FT E+ I A++
Sbjct: 62  PASMTKLMTFAVLSDKLKSGALTLGTVVQIEPEDARMGGTQVFLDPRESFTVEELIYAMM 121

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH------DKNQITT 190
            +SAND S A     +GS   F  LM+ KA+++GM  T +++  GL        +  +TT
Sbjct: 122 IQSANDASYALARVSAGSVPAFVELMNAKARELGMTQTTFRSPHGLPPKSRRVSEGDLTT 181

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRK-----FRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
            RD + L   L  N     KY S++       R   + + NHN LL K+  +DG+KTGYT
Sbjct: 182 PRDFSRLCRHLLLN-TDVLKYSSVKHRVFGPQRATPQQMKNHNNLLGKVAGVDGLKTGYT 240

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGM--PTSQ-----ERDQKALELITSFL 288
             +G+ +  +    D  ++ V+MG   P  Q      RD+K +EL+    
Sbjct: 241 EGAGYCLSATALRNDRRVIVVIMGAFGPNGQKDLGRSRDRKTIELLERGF 290


>gi|294649783|ref|ZP_06727186.1| D-ala-D-ala-carboxypeptidase [Acinetobacter haemolyticus ATCC
           19194]
 gi|292824334|gb|EFF83134.1| D-ala-D-ala-carboxypeptidase [Acinetobacter haemolyticus ATCC
           19194]
          Length = 438

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 116/243 (47%), Gaps = 10/243 (4%)

Query: 53  KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK--T 109
             +  ++D    Q+         R PASLTKMM  Y+  + +++ KL     I  +    
Sbjct: 33  AQAWSIVDAQSGQIIAEHNSHVQRAPASLTKMMVAYVALKEIEAGKLRKEDVITATSVVN 92

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
               + S++YLKE    + +Q +  LI  SAND +    E ISGS  +F I M+ +A+ +
Sbjct: 93  TVMWDESQMYLKEGEQISVDQLLAGLIVMSANDAALTLAERISGSVPQFIIRMNQEAQAL 152

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM++T + N +G+   +  +TA D  +L   +    P+Y  Y  +  F Y  R     N 
Sbjct: 153 GMKDTHFSNPAGITMPDHYSTAADLGLLAQAIVTKTPEYLYYSKMPSFSYNQRFHRATNL 212

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMPTSQERDQKALE 282
            L      DG+KTG+T+ +G+N+  +              ++ +V+G P + +R + A +
Sbjct: 213 ALKMDSTADGLKTGFTKAAGYNLALTAERPTLNPHIDKRRLIVIVLGTPNAIKRAEVANK 272

Query: 283 LIT 285
           L+ 
Sbjct: 273 LMN 275


>gi|228907701|ref|ZP_04071557.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           IBL 200]
 gi|228851934|gb|EEM96732.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
           IBL 200]
          Length = 309

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 67/249 (26%), Positives = 131/249 (52%), Gaps = 13/249 (5%)

Query: 53  KYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+     + +S  AA
Sbjct: 57  AKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWEDPVKMSVKAA 116

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +++ ++     T      AL+  SAN+ + A  E ++ +EK F  LM+ KAK++ M
Sbjct: 117 QTEGARIPVQVNDTLTVNDLYHALMIESANNSAVALAEHMAKTEKDFVQLMNAKAKQLKM 176

Query: 172 -QNTIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIIT 225
            ++  + NASGL + +      TA D A L   L K++P+  +   +R+ +  + N  + 
Sbjct: 177 SEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLRQSQLAFNNINVI 236

Query: 226 NHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           + N +LNK         +DG+KTG+T ++G+    + +  D+ I+ VVMG  +  +R  +
Sbjct: 237 STNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGTSSKTKRFTE 296

Query: 280 ALELITSFL 288
             +L++   
Sbjct: 297 TNKLMSYAF 305


>gi|258515621|ref|YP_003191843.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779326|gb|ACV63220.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 381

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 145/305 (47%), Gaps = 23/305 (7%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           ++  + + L    + LS+   S+A ++       +++++D    Q+   K+ D+ R+PAS
Sbjct: 1   MFCYKKLILALAAVILSLTNTSIAYAQEPVLSADAAVLMDSATGQVFFAKEPDKRRFPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-PSKLYLKEKTYFTTEQGILALITR 138
           LTK+MT  +  E         N  + +SK AA+ +  S + L+     T E  + A +  
Sbjct: 61  LTKIMTALVALENGDP-----NDVVKISKKAASVSMGSVIDLRAGEEITLENLLKAALVC 115

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           SAND + A  E + G+ + F ++M+ +A   G  NT Y N +G    N  TTA D A++ 
Sbjct: 116 SANDSTVAIAEHVGGNVENFLVMMNARALSAGAVNTNYANTNGYTLPNHYTTAYDLALIA 175

Query: 199 ILLRKNFPQYYKYFSIRKFR-----YRNRI--ITNHNKLLN-KMHNIDGIKTGYTRNSGF 250
               +N  Q+ +  SI++        +NR   I N N+LL      IDG+KTG T  +G 
Sbjct: 176 RQALRN-KQFNRLISIKETTLNWEGNKNRTLEIRNTNRLLREGFPGIDGVKTGSTPRAGD 234

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRK-DNLSSTSL 309
            ++ S       ++AVV+    S  R   A  ++      K +K  Q  +K + + S  +
Sbjct: 235 CLIASASRNGRRLIAVVL---HSNNRYTDAANILNYGF--KEIKSYQVFKKGEQVVSVPV 289

Query: 310 KKSLM 314
            + ++
Sbjct: 290 MEGVL 294


>gi|239629143|ref|ZP_04672174.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519289|gb|EEQ59155.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 530

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 131/301 (43%), Gaps = 31/301 (10%)

Query: 18  PYGSIYIQRNIQL-------MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK 70
             G  +++R   L       MG     ++      S++  +     IV+D +   +   K
Sbjct: 1   MIGDCWMKRLFSLFLCLCLSMGVFTIRALAAPEWPSDVSIQAD-GGIVMDADTGTVLYGK 59

Query: 71  Q-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYF 126
             D+  YPAS+TK++T  I+ E     +  L+  +  S           S   + E    
Sbjct: 60  NMDQQYYPASITKILTALIVLE-----RCDLDEMVSFSHDDVYNVEAGSSSAGIDEGDVL 114

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           T    + AL+  SAN+ + A    +SGS ++FA LM+ KA  +G   + + N SGL+D+N
Sbjct: 115 TVRDCLYALMLASANESANALACHVSGSREEFAKLMNEKAASLGCTGSHFANPSGLNDEN 174

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKF-------RYRNRIITNHNKLLNK-----M 234
             TTA D A++     KN P++      R +             + NH+K+LNK      
Sbjct: 175 HYTTAHDMALIAREAIKN-PEFLAINGTRSYKLAPTKRTPEGGYVANHHKMLNKNESVYY 233

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
                 KTGYT  +G  +VT  +     ++AVV+    S   D KA+    +F   ++LK
Sbjct: 234 PGAFAGKTGYTSLAGNTLVTCAKKDGMTLIAVVLNGHQSHYSDTKAM-FDFAFRNFQSLK 292

Query: 295 H 295
            
Sbjct: 293 A 293


>gi|325123015|gb|ADY82538.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 440

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 119/243 (48%), Gaps = 10/243 (4%)

Query: 53  KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK--T 109
             +  ++D    Q+         R PASLTKMM  YI  + +++ KL     I  +   +
Sbjct: 34  AAAWTIVDTQSGQIIAEHNSHVQRAPASLTKMMVAYIALKEIKAGKLKKEEIITATPVVS 93

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
               + S++YLK     + +Q +  LI  SAND +    E ISG   +F   M+ +A+ +
Sbjct: 94  VVQWDESQMYLKAGEQISVDQLLAGLIVMSANDAAVTLAEKISGDVPRFVQRMNQEAQAL 153

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM++T + N +G+   +  TTA D ++L   L K  P+Y  Y  +  F Y  R     N 
Sbjct: 154 GMKDTHFSNPAGITMPDHFTTAHDLSLLSQALIKQTPEYLHYSKMPSFSYNQRFHHATNL 213

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYK-------DDPIVAVVMGMPTSQERDQKALE 282
            L    ++DG+KTGYT+ +G+N+  +              ++ +V+G P++ +R + A +
Sbjct: 214 ALKYDPSVDGLKTGYTKAAGYNLALTASRPSFSSDLTQRRLLVIVLGTPSAVKRAEIADK 273

Query: 283 LIT 285
           L+ 
Sbjct: 274 LMN 276


>gi|262402708|ref|ZP_06079269.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC586]
 gi|262351490|gb|EEZ00623.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC586]
          Length = 317

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 110/205 (53%), Gaps = 4/205 (1%)

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVS 144
           +I + ++   + LN  + +SK A  +N    SK++++  T          +I +S ND  
Sbjct: 1   MIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDAC 60

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  E ++G+E  F  LM+  A  +GM+N+ + N+ GL + +  +T  D A+LG  L ++
Sbjct: 61  VAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDNPDLYSTPYDLALLGQALIRD 120

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
            P+ Y  +S +KF Y      N N LL  K  N+DGIKTG+T  +G+N+V+S    +  +
Sbjct: 121 VPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRL 180

Query: 264 VAVVMGMPTSQERDQKALELITSFL 288
           VAVVMG      R  ++ +L++   
Sbjct: 181 VAVVMGTDNENARKAESKKLLSYGF 205


>gi|196248748|ref|ZP_03147448.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16]
 gi|196211624|gb|EDY06383.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16]
          Length = 354

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 114/259 (44%), Gaps = 16/259 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I+I+ +  ++   K     R  AS+TK+MT  +  E  +     L+  + VS  A 
Sbjct: 6   AKSAILIEQHSGRILFAKDAHTKRRIASITKIMTAILAIESGK-----LDDTVTVSARAV 60

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S +YL++         +  L+ RS ND + A  E + GS + F  LM+ KA +IGM
Sbjct: 61  RTEGSSIYLRQGEKMKLRDLVYGLMLRSGNDAAVAIAEHVGGSVEGFVFLMNEKAAEIGM 120

Query: 172 QNTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-------RNRI 223
           ++T + N  GL D +N  +TA D A+L     KN  ++ +    + +R          R+
Sbjct: 121 RDTEFANPHGLDDAENHYSTAYDMALLMQYAMKN-KEFRRISGTKVYRAPAPPGEDGARV 179

Query: 224 ITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
             N NKLL        G KTGYT+ +   +VT+       +VAV +             E
Sbjct: 180 WRNKNKLLTSLYEYCTGGKTGYTKRAHRTLVTTASKDGIDLVAVTLDASDDWNDHIAMYE 239

Query: 283 LITSFLEKKTLKHQQTHRK 301
              S      +  ++  ++
Sbjct: 240 YGFSNYRIAKVSGKRIVKR 258


>gi|229196199|ref|ZP_04322948.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus m1293]
 gi|228587264|gb|EEK45333.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus m1293]
          Length = 317

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 132/258 (51%), Gaps = 16/258 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E+ AK   ++++ID +   +      +E   PAS++KMMT+Y++ E + + K+    
Sbjct: 59  IPPEIDAK---AAMIIDASNGDIIYQHNENEAFAPASMSKMMTVYLLLENVHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM
Sbjct: 116 PVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLM 175

Query: 163 SNKAKKIGM-QNTIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             KAK+  M ++  + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 176 DAKAKQFKMSEHAKFANASGLQEPDGSETKMTAGDVANLAYHLIKDYPEILEVTHLRQSQ 235

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         IDG+KTG+T ++G+    + +  D  I+ VVMG 
Sbjct: 236 LAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGT 295

Query: 271 PTSQERDQKALELITSFL 288
               +R  +  +L++   
Sbjct: 296 KGKTKRFTETNKLMSYAF 313


>gi|229190458|ref|ZP_04317457.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus ATCC 10876]
 gi|228593007|gb|EEK50827.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus ATCC 10876]
          Length = 416

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 139/306 (45%), Gaps = 30/306 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S+ A 
Sbjct: 20  AGSAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAH 79

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K
Sbjct: 80  KISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSK 139

Query: 168 KIGMQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFS 213
           + GM++  + N++GL               D+    +ARD AIL   L ++FPQ      
Sbjct: 140 EFGMKDYKFVNSTGLTNQDLKGYHLEGTTLDEKNKMSARDCAILAQRLIQDFPQILNTAK 199

Query: 214 IRKFRYRN-----RIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           I K  ++        + N N +L     +   +DG+KTG T  +G     ++      ++
Sbjct: 200 IPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLI 259

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
           +VV+   +   R  +  +L         +K+   + KD++        +   K K    Q
Sbjct: 260 SVVIKAKSHTARFDETKKLYDYGFANFEVKN--VYGKDSVVKGHETVRVANAKEKDVVVQ 317

Query: 325 FKKIDA 330
            K++ +
Sbjct: 318 MKQVVS 323


>gi|89100964|ref|ZP_01173810.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. NRRL
           B-14911]
 gi|89084335|gb|EAR63490.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. NRRL
           B-14911]
          Length = 433

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 69/335 (20%), Positives = 139/335 (41%), Gaps = 38/335 (11%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYII 89
           M  I     +  + A +       ++IV++    ++   K  +     AS+TK+MT Y++
Sbjct: 1   MMVIGLFPGLNKASADDALNINADAAIVVEAETGKVLYSKNADKVLGIASMTKIMTEYLL 60

Query: 90  FEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
            E ++  K+  + +  VS+        +  S + L+    +  ++   A+   SAN  + 
Sbjct: 61  LEAIKEGKVKWDQEYAVSEYVWKVSQDRALSNVPLRRDGKYNIKELYEAMSIYSANGATI 120

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-------------KNQITTAR 192
           A  E I+GSE  F  +M++KA+++G+++  + N+SGL++                + +AR
Sbjct: 121 AIAETIAGSESNFVKMMNDKAEELGLKDYKFVNSSGLNNRDLKGSHQVGGAEDENVMSAR 180

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYR-----NRIITNHNKLLNK----MHNIDGIKTG 243
             A L   L  ++P+  +  SI    +R        + N N +L         +DG+KTG
Sbjct: 181 ATAKLAQRLLHDYPEILETTSIPTKNFREGTDDEIKMDNWNWMLPSLVFGYEGVDGLKTG 240

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMP------TSQERDQKALELITSFL-----EKKT 292
            T  +G+    +     +  + VVM         + + R  +  +++         E+  
Sbjct: 241 TTDFAGYCFTGTATRDGNRYITVVMNAKGEGNSGSYKSRFDETRKMLDYAFSNFSKEEII 300

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
            K+ Q   +  L  T  K+  +  + K       K
Sbjct: 301 AKNYQVKGQKTLPVTKGKEDSVKIQAKDAIELVVK 335


>gi|160880714|ref|YP_001559682.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           phytofermentans ISDg]
 gi|160429380|gb|ABX42943.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           phytofermentans ISDg]
          Length = 429

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 64/270 (23%), Positives = 122/270 (45%), Gaps = 19/270 (7%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+ ++D +  ++   K   +    AS TK+MTL ++ E     K +L+  + V+  AA
Sbjct: 75  ALSACLMDASNGRVLYGKDAYKEMPMASTTKIMTLLVVLE-----KANLDDVVTVTSNAA 129

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            Q   +L ++    +     + +L+  S ND + A  E + GS + F  +M+ KAK++G 
Sbjct: 130 KQPDVQLNIQTGEQYILRDLLYSLMLESHNDTAVAIAEHVGGSVEGFCNMMTEKAKELGA 189

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN------RIIT 225
            +T +K  +GL      TTARD +++     KN P++ K      +++          + 
Sbjct: 190 NHTSFKTPNGLDADGHYTTARDLSLIASYAIKN-PEFCKIVGTATYQFNEVNHKRSFNVN 248

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM---PTSQERDQKALE 282
           N ++ L  M    GIKTG+T  +G+  V ++      +V+ V+G    P    +     +
Sbjct: 249 NRDRFLYMMKGAIGIKTGFTGKAGYCFVGAVNIDGKTLVSTVLGSGWPPHKTYKWADTTK 308

Query: 283 LITSFLEK---KTLKHQQTHRKDNLSSTSL 309
           L+   L      +L  + T   + +    +
Sbjct: 309 LMEYGLNNFNVYSLYEKLTPGSECVKVPEV 338


>gi|229131021|ref|ZP_04259937.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BDRD-ST196]
 gi|228652433|gb|EEL08354.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BDRD-ST196]
          Length = 418

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 72/316 (22%), Positives = 141/316 (44%), Gaps = 42/316 (13%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ VS+ A 
Sbjct: 20  AGAAILVEANSGKILYQKNADELLSIASMTKMMSEYLVNEAIAKGKLKWDQKVKVSEYAY 79

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                ++ S + L+    +T ++   A+   SAN  + A  E ++G E  F  +M++K+K
Sbjct: 80  NISQDRSLSNVPLRNGESYTVKELYEAMAIYSANGATIALAEAVAGKEVDFVKMMNDKSK 139

Query: 168 KIGMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           + G++N  + N++GL               D+    +ARD AIL   L ++FP+      
Sbjct: 140 EFGLKNYKFVNSTGLTNKDLKGHHPEGTTPDEENKMSARDVAILAQRLIQDFPKTLDIAK 199

Query: 214 IRKFRYRNRI-----ITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           I K  +R        + N N +L         +DG+KTG T  +G     ++       +
Sbjct: 200 ISKKVFREGTPDRIEMPNWNWMLKGLIKEYEGVDGLKTGSTPEAGDCFTGTIERNGMRFI 259

Query: 265 AVVMGMPTSQERDQKALELITSFL----------EKKTLKHQQTHRKDNLSSTSL----K 310
           +VV+   +   R  +  +L               +  ++K ++T R +N     +    K
Sbjct: 260 SVVIKTKSHTARFDETKKLYDYGFASFEMKKMYEKGSSVKGRETVRVENAKDKDVAVQTK 319

Query: 311 KSLMIKKLKRTYSQFK 326
           +++ +   K +   +K
Sbjct: 320 QAVSLPVPKGSKDVYK 335


>gi|319655038|ref|ZP_08009108.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. 2_A_57_CT2]
 gi|317393262|gb|EFV74030.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. 2_A_57_CT2]
          Length = 451

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 74/352 (21%), Positives = 146/352 (41%), Gaps = 47/352 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTK 82
           I   + L+  +  L  I  + A ++      ++I++D    ++   K  +     AS+TK
Sbjct: 10  IAGFLALVMILGLLPGIHKAHAEDILNINADAAILVDAETGKILYQKNADKVLGIASMTK 69

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGILALITR 138
           MMT Y++ E ++  K+  + +  VS+        +N S + L+    +   +   A+   
Sbjct: 70  MMTEYLLLEAVEEGKVKWDQEYAVSEYVWKVSQDRNLSNVPLRRDGKYNIRELYEAMAIY 129

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-------------K 185
           SAN  + A  E I+GSE  F  +M+ KA ++G+++  + N+SGL++             +
Sbjct: 130 SANGATIAIAETIAGSETNFVKMMNEKAAELGLKDYKFVNSSGLNNRDLKGSPPAGGPEE 189

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NRIITNHNKLL----NKMHN 236
             + +A+D A+L   L   FP+  +  S  +  +R        + N N +L         
Sbjct: 190 ENVMSAKDTAMLAKELINRFPEVLETASTPRKTFREGTDDEIKMENWNWMLPELVYGYEG 249

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP------TSQERDQKALELITSFLEK 290
            DG+KTG T  +G+    +     +  ++VVM         T + R  +  ++       
Sbjct: 250 ADGLKTGTTDFAGYCFTGTAMRDGNRYISVVMNAKGANGQATYKSRFDETKKMFDFGFSN 309

Query: 291 KT----------LKHQQTH----RKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
            T          +K Q+T      K++    S K ++ +         +K +
Sbjct: 310 FTKEEIVPANYQVKGQKTVPVTKGKEDKVKISSKDAIEMVVRNGEKENYKPV 361


>gi|228921188|ref|ZP_04084518.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228838504|gb|EEM83815.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 416

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 142/318 (44%), Gaps = 32/318 (10%)

Query: 43  SMASELHA--KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           + A  + A      S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL 
Sbjct: 8   AAAETVPAIDVEAGSAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLK 67

Query: 100 LNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
            + ++ +S+ A      ++ S + L+    +T ++   A+   SAN  + A  E I+G E
Sbjct: 68  WDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEEIAGKE 127

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAILGILL 201
             F  +M++K+K+ GM++  + N++GL               D+    +ARD AIL   L
Sbjct: 128 VNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLEGTTLDEKNKMSARDCAILAQRL 187

Query: 202 RKNFPQYYKYFSIRKFRYRN-----RIITNHNKLLN----KMHNIDGIKTGYTRNSGFNI 252
            ++FPQ      I K  ++        + N N +L     +   +DG+KTG T  +G   
Sbjct: 188 IQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCF 247

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
             ++      +++VV+   +   R  +  +L         +K+   + KD++        
Sbjct: 248 TGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFANFKVKN--VYGKDSVIKGHETVR 305

Query: 313 LMIKKLKRTYSQFKKIDA 330
           +   K K    Q K+  +
Sbjct: 306 VANAKDKDVVVQTKQAVS 323


>gi|49475609|ref|YP_033650.1| penicillin-binding protein [Bartonella henselae str. Houston-1]
 gi|49238416|emb|CAF27643.1| Penicillin-binding protein [Bartonella henselae str. Houston-1]
          Length = 387

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 77/326 (23%), Positives = 148/326 (45%), Gaps = 24/326 (7%)

Query: 28  IQLMGKILFLSIIMISMASELHAKP-KYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           ++ + +I F    M+++     A+  + S+   +++D + + +   KQ D P +PASL K
Sbjct: 1   MRTVLRIFFTLFWMLTLDGRGKAEDFQTSAQQLLLVDDDTDTVLFEKQSDIPFFPASLAK 60

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALIT 137
           +MT  +IF  L+   L       VS+ A  +       + ++ K KT  +    +  LI 
Sbjct: 61  LMTAEVIFHQLKEGLLSNTQTFKVSENAWRKGGAPSGTTTMFAKVKTEISVSDLLRGLII 120

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            + ND +    E +SGSE  FA LM+ +AK +G++++ + N +GL ++ Q  T RD   L
Sbjct: 121 VNGNDAAITLAEGVSGSEADFAKLMNQRAKALGLEHSYFVNPTGLPEEEQFVTLRDMMTL 180

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              + + +P YY  +    F +      N N L++K   ++G   GY+   GF++V +  
Sbjct: 181 TRHIARAYPNYYILYREPHFTWNKIFQRNKNPLISKEIGVEGFGFGYSEEEGFSMVVAAY 240

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITS----------FLEKKTLKHQQTHRKDNLSST 307
                +   + G+   +   ++   ++            F + +T+ H   +  +  S  
Sbjct: 241 KNHRHLFLAINGLQNGKGHTKEIERILQWGMTAFDLKTIFTKGETVGHASVYGGEQNSVP 300

Query: 308 SLKKSLMIKKLKRTYSQFKKIDAKAH 333
            + K      ++   S  KK+D KA 
Sbjct: 301 LIVKG----PIRFMLSNEKKVDVKAK 322


>gi|50084374|ref|YP_045884.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein
           [Acinetobacter sp. ADP1]
 gi|49530350|emb|CAG68062.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein
           [Acinetobacter sp. ADP1]
          Length = 436

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 79/303 (26%), Positives = 142/303 (46%), Gaps = 18/303 (5%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDE-PRYPASL 80
           R    +  +  L    ++ A+ L+  P      +  ++D    Q+         R PASL
Sbjct: 2   RLFFSILSLFSLLCASVAHANLLNIAPESVEAEAWSIVDAQSGQIISEHNSHIQRAPASL 61

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSK--TAATQNPSKLYLKEKTYFTTEQGILALITR 138
           TKMM  YI  + L++ KLH    +  +        + S++YLK     + +Q +  LI  
Sbjct: 62  TKMMVAYITLKELKAGKLHKTDILTATPVVNMVMWDESQMYLKPGEQISIDQLLAGLIVM 121

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           SAND +    E ISG+   F   M+ +A+ +GM++T + N +G+   +  +T+ D A+L 
Sbjct: 122 SANDAAVTLAERISGNVPDFLKRMNQEAQALGMKDTYFSNPAGVTMPDHYSTSHDLALLA 181

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             + K  P Y  Y  +  F Y+ R     N  L      DG+KTGYT+ +G+N+  + + 
Sbjct: 182 QAIVKQTPDYLSYSKLPSFSYQQRFHRATNLALKIDPTADGLKTGYTKAAGYNLALTAKR 241

Query: 259 -------KDDPIVAVVMGMPTSQERDQKALELITSFL----EKKTLKHQQTHRKDNLSST 307
                   D  ++ VV+G   + +R + A +L+        +++ +K+ QT  +  +  +
Sbjct: 242 PTMNVDIPDRRMIVVVLGTKNAHKRAEVANKLMNLAYAYTRDEEVIKNNQTIAELPVIKS 301

Query: 308 SLK 310
           +LK
Sbjct: 302 TLK 304


>gi|229127885|ref|ZP_04256871.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BDRD-Cer4]
 gi|228655650|gb|EEL11502.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BDRD-Cer4]
          Length = 416

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 139/306 (45%), Gaps = 30/306 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S+ A 
Sbjct: 20  AGSAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAH 79

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K
Sbjct: 80  KISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSK 139

Query: 168 KIGMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFS 213
           + GM++  + N++GL +++                 +ARD AIL   L ++FPQ      
Sbjct: 140 EFGMKDYKFVNSTGLTNQDLKGYHLEGTTLEEKNKMSARDCAILAQRLIQDFPQILNTAK 199

Query: 214 IRKFRYRN-----RIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           I K  ++        + N N +L     +   +DG+KTG T  +G     ++      ++
Sbjct: 200 IPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLI 259

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
           +VV+   +   R  +  +L         +K+   + KD++        +   K K    Q
Sbjct: 260 SVVIKAKSHTARFDETKKLYDYGFANFEVKN--VYGKDSVIKGHETVRVANAKEKDVVVQ 317

Query: 325 FKKIDA 330
            K+  +
Sbjct: 318 TKQAVS 323


>gi|291484748|dbj|BAI85823.1| penicillin-binding protein 5* [Bacillus subtilis subsp. natto
           BEST195]
          Length = 382

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 77/317 (24%), Positives = 140/317 (44%), Gaps = 14/317 (4%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKM 83
           ++ + ++     ++ + ++ A         S+I+ID    ++   K +   R  AS+TK+
Sbjct: 5   KKAVFVIMISFLIATVNVNTAHAAIDVSAKSAIIIDGASGRVLYAKDEHQKRRIASITKI 64

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT  +  E  +     ++  + VS  A     S +YL E      +  +  L+ RS ND 
Sbjct: 65  MTAVLAIESGK-----MDQTVTVSANAVRTEGSAIYLTEGQKVKLKDLVYGLMLRSGNDA 119

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLR 202
           + A  E + GS   F  +M+ KA+++GM+NT ++N  GL D +N  +TA D AIL     
Sbjct: 120 AVAIAEHVGGSLDGFVYMMNQKAEQLGMKNTRFQNPHGLDDHENHYSTAYDMAILTKYAM 179

Query: 203 KNFPQYYKYFSIRKFRYRNR--IITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYK 259
           K    Y K    + ++      +  N NKLL        G KTGYT+ +   +V++    
Sbjct: 180 K-LKDYQKISGTKIYKAETMESVWKNKNKLLTMLYPYSTGGKTGYTKLAKRTLVSTASKD 238

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKK-L 318
              ++AV +  P   +   K    +    +   +  +    K  L  T  +    IK+ +
Sbjct: 239 GIDLIAVTINDPNDWDDHMKMFNYVFEHYQTYLIAKKGDIPK--LKGTFYESKAFIKRDI 296

Query: 319 KRTYSQFKKIDAKAHST 335
               ++ +K D K ++T
Sbjct: 297 TYLLTEEEKEDVKINTT 313


>gi|229053860|ref|ZP_04195297.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH603]
 gi|228721470|gb|EEL72987.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH603]
          Length = 418

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 72/316 (22%), Positives = 141/316 (44%), Gaps = 42/316 (13%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ VS+ A 
Sbjct: 20  AGAAILVEANSGKILYQKNADELLSIASMTKMMSEYLVNEAIAKGKLKWDQKVKVSEYAY 79

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                ++ S + L+    +T ++   A+   SAN  + A  E ++G E  F  +M++K+K
Sbjct: 80  NISQDRSLSNVPLRNGESYTVKELYEAMAIYSANGATIALAEAVAGKEVDFVKMMNDKSK 139

Query: 168 KIGMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           + G++N  + N++GL               D+    +ARD AIL   L ++FP+      
Sbjct: 140 EFGLKNYKFVNSTGLTNKDLKGHHPEGTTPDEENKMSARDVAILAQRLIQDFPKTLDIAK 199

Query: 214 IRKFRYRNRI-----ITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           I K  +R        + N N +L         +DG+KTG T  +G     ++       +
Sbjct: 200 ISKKVFREGTPDRIEMPNWNWMLKGLIKEYEGVDGLKTGSTPEAGDCFTGTIERNGMRFI 259

Query: 265 AVVMGMPTSQERDQKALELITSFL----------EKKTLKHQQTHRKDNLSSTSL----K 310
           +VV+   +   R  +  +L               +  ++K ++T R +N     +    K
Sbjct: 260 SVVIKTKSHTARFDETKKLYDYGFASFEMKKMYEKGSSVKGKETVRVENAKDKDVAAQTK 319

Query: 311 KSLMIKKLKRTYSQFK 326
           +++ +   K +   +K
Sbjct: 320 QAVSLPVPKGSKDVYK 335


>gi|319651403|ref|ZP_08005532.1| DacB protein [Bacillus sp. 2_A_57_CT2]
 gi|317396934|gb|EFV77643.1| DacB protein [Bacillus sp. 2_A_57_CT2]
          Length = 374

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 76/305 (24%), Positives = 132/305 (43%), Gaps = 21/305 (6%)

Query: 34  ILFLSIIMISMASELHAK---PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
           +L  +++M+++  +  A       S+I+++ +  ++   K  +E R  AS+TK+MT  + 
Sbjct: 2   VLATALMMMNIPQKAEASVSVSARSAILMEQDSGRILYQKDANEVRRIASITKIMTAILA 61

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            E  +     ++  + VS  A     S +YLK       E  +  L+ RS ND + A  E
Sbjct: 62  IESGK-----MDDMVKVSDRAVRAEGSSIYLKAGEKIKLEDLVYGLMLRSGNDSAVAIAE 116

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQY 208
            + GS + F  LM+ KA++IGM+NT + N  GL D ++  +TA D A+L      N   Y
Sbjct: 117 HVGGSLEGFGFLMNKKAEEIGMKNTHFANPHGLDDHEDHYSTAYDMALLTRYAMNN-ETY 175

Query: 209 YKYFSIRKFRYRN------RIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
            K    +  R  N      R+  N N+LL +      G KTGYT+ +   +VT+      
Sbjct: 176 QKIAGTKVHRAPNPNESWDRVWKNKNRLLTELYEYCTGGKTGYTKRAKRTLVTTASKGSL 235

Query: 262 PIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRT 321
            ++AV +  P         + +  +  +   +         +       K  +  K    
Sbjct: 236 NLIAVTLNGPDD---WNDHINMYETAFKTYDIVEVLPEGIIDDIDEEYYKGKVYLKHPYH 292

Query: 322 YSQFK 326
           Y   K
Sbjct: 293 YPVLK 297


>gi|304316607|ref|YP_003851752.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778109|gb|ADL68668.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 418

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 73/279 (26%), Positives = 124/279 (44%), Gaps = 20/279 (7%)

Query: 30  LMGKILFLSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLY 87
           +M  I+ +S I    A E   +    +++++D    Q+   K   +  YPAS TK++T  
Sbjct: 8   IMAFIILISFIPHVYAIESPPQIVGPTAVLMDFTTGQVLYDKNMHQKMYPASTTKILTAI 67

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           I  E     K  LN  + V+      + + +YL      T EQ + A++  SAND + A 
Sbjct: 68  IAIE-----KGKLNDVVTVNDDVKNIDGNSIYLVPGEKLTLEQLLYAMLLESANDAAIAV 122

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            + I GS + FA +M+ KAK+IG  ++ + N +GL D N  +T  D A++      N   
Sbjct: 123 ADHIGGSVQAFADMMNKKAKEIGANDSHFVNPNGLPDNNHYSTPYDMALIARYAMGN-AT 181

Query: 208 YYKYFSIRKFRY-------RNRIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSL 256
           + K  S   ++        + R +   N+L+          DG+KTGYT  +    V S 
Sbjct: 182 FRKIVSTIHYQILPTNKFDKPRDLWISNRLIKPSSFHYDGADGVKTGYTIAANQVFVGSA 241

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKH 295
                 +++V+MG   +       + L+       TL +
Sbjct: 242 TRNGHRLISVIMGDEGTNI-WSDTINLLDYGFNNYTLVN 279


>gi|228952739|ref|ZP_04114812.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228806910|gb|EEM53456.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
          Length = 416

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 142/318 (44%), Gaps = 32/318 (10%)

Query: 43  SMASELHA--KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           + A  + A      S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL 
Sbjct: 8   AAAETVPAIDVEAGSAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLK 67

Query: 100 LNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
            + ++ +S+ A      ++ S + L+    +T ++   A+   SAN  + A  E I+G E
Sbjct: 68  WDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKE 127

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAILGILL 201
             F  +M++K+K+ GM++  + N++GL               D+    +ARD AIL   L
Sbjct: 128 VNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLEGTTLDEKNKMSARDCAILAQRL 187

Query: 202 RKNFPQYYKYFSIRKFRYRN-----RIITNHNKLLN----KMHNIDGIKTGYTRNSGFNI 252
            ++FPQ      I K  ++        + N N +L     +   +DG+KTG T  +G   
Sbjct: 188 IQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCF 247

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
             ++      +++VV+   +   R  +  +L         +K+   + KD++        
Sbjct: 248 TGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFANFEVKN--VYGKDSVIKGHETVR 305

Query: 313 LMIKKLKRTYSQFKKIDA 330
           +   K K    Q K+  +
Sbjct: 306 VANAKDKDVVVQTKQAVS 323


>gi|52080833|ref|YP_079624.1| D-alanyl-D-alanine carboxypeptidase [Bacillus licheniformis ATCC
           14580]
 gi|52786204|ref|YP_092033.1| DacB [Bacillus licheniformis ATCC 14580]
 gi|319645208|ref|ZP_07999441.1| DacB protein [Bacillus sp. BT1B_CT2]
 gi|52004044|gb|AAU23986.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*)
           [Bacillus licheniformis ATCC 14580]
 gi|52348706|gb|AAU41340.1| DacB [Bacillus licheniformis ATCC 14580]
 gi|317393017|gb|EFV73811.1| DacB protein [Bacillus sp. BT1B_CT2]
          Length = 384

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 77/315 (24%), Positives = 133/315 (42%), Gaps = 18/315 (5%)

Query: 29  QLMGKILFLSIIMISMASELHAKP-----KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           Q    I+  S++  S      A+P       S+IV+D    ++   K   E R  AS+TK
Sbjct: 7   QAAAAIMICSLLCSSY-ETAQAQPSLHISAKSAIVMDGQSGRVLFAKDEHEKRRIASITK 65

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT  +  E  +     L+  + VS  A     S +YL        +  +  L+ RS ND
Sbjct: 66  IMTAILAVESGK-----LDETVTVSDRAVRTEGSSIYLTSGQKVKLKDLVYGLMLRSGND 120

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILL 201
            + A  E + GS + F  +M+ KA ++GM+NT+++N  GL D  +  ++A D A+L    
Sbjct: 121 AAVAIAEHVGGSLEGFVYMMNQKAAELGMENTLFRNPHGLDDHPDHYSSAYDMALLTKYA 180

Query: 202 RKNFPQYYKYFSIRKFRYRN--RIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRY 258
             N   Y K    ++++      I  N NKLL        G KTGYT+ +   +V++   
Sbjct: 181 MTN-ETYKKIAGTKRYKAETMQGIWRNKNKLLTGLYKYSTGGKTGYTKLAKRTLVSTSSK 239

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKL 318
               ++AV +  P            +    +   +  +    K   S     K+ + + +
Sbjct: 240 DGTDLIAVTINAPDDWNDHMNMFNYVFGHYKTYIIAKKGEIPKLKDSFYG-NKAFIKRDV 298

Query: 319 KRTYSQFKKIDAKAH 333
               ++ +K D K  
Sbjct: 299 TYLLNEEEKEDVKVD 313


>gi|241204717|ref|YP_002975813.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240858607|gb|ACS56274.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 397

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 120/239 (50%), Gaps = 6/239 (2%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + +I+     +   K  D+   PASL K+MT+ + FE L   ++ L+T+ PVS+ A    
Sbjct: 36  AYMIEAATGTVLLAKNEDQGFSPASLAKLMTMDLAFEALTKGQITLDTEYPVSEYAWRTG 95

Query: 115 PS-----KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            +      ++   K+    E  I  +  + AND      E ++GSE++FA+ M+ +A+++
Sbjct: 96  GAPSRTATMFASLKSRVRVEDLIKGVAIQGANDSCIILAEGMAGSEQQFAVSMTRRAREL 155

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM+   + N++GL D     TAR+   L   L++ +P  Y YF+   F +      N N 
Sbjct: 156 GMEKAEFGNSTGLPDGKSKVTAREMVTLAAALQQTYPNLYPYFAQPDFEWNKIFQRNRNP 215

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           LL      DG+ TG+T   G++IV S+      +   + G+ + +ER ++A  ++   L
Sbjct: 216 LLGLDLGADGLATGFTEGEGYSIVASVERDGRRLFVALAGIASDKERTEEAKRVLEWGL 274


>gi|229073057|ref|ZP_04206247.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus F65185]
 gi|228710062|gb|EEL62046.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus F65185]
          Length = 416

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 139/306 (45%), Gaps = 30/306 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S+ A 
Sbjct: 20  AGSAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAH 79

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K
Sbjct: 80  KISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSK 139

Query: 168 KIGMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFS 213
           + GM++  + N++GL +++                 +ARD AIL   L ++FPQ      
Sbjct: 140 EFGMKDYKFVNSTGLTNQDLKGYHLEGTTLEEKNKMSARDCAILAQRLIQDFPQILNTAK 199

Query: 214 IRKFRYRN-----RIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           I K  ++        + N N +L     +   +DG+KTG T  +G     ++      ++
Sbjct: 200 IPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLI 259

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
           +VV+   +   R  +  +L         +K+   + KD++        +   K K    Q
Sbjct: 260 SVVIKAKSHTARFDETKKLYDYGFANFEVKN--VYGKDSVIKGHETVRVANAKDKDVVVQ 317

Query: 325 FKKIDA 330
            K+  +
Sbjct: 318 TKQAVS 323


>gi|228990988|ref|ZP_04150951.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudomycoides
           DSM 12442]
 gi|228997075|ref|ZP_04156706.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides
           Rock3-17]
 gi|229004731|ref|ZP_04162467.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides
           Rock1-4]
 gi|228756524|gb|EEM05833.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides
           Rock1-4]
 gi|228762700|gb|EEM11616.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides
           Rock3-17]
 gi|228768768|gb|EEM17368.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudomycoides
           DSM 12442]
          Length = 343

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 133/250 (53%), Gaps = 13/250 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++++ID +  Q+     +E    PAS++KMMT YI+ E +   K+H   Q+ +S  +A
Sbjct: 91  AKAAMIIDASNGQVMYKNNEEELLAPASMSKMMTAYILLENIHKGKVHWEDQVKISAKSA 150

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +++ ++     T +    AL+ +SAN+ + A  E I+ +E+ FA LM+  AK++ +
Sbjct: 151 QAEGARIPVQTGDVLTVKDLYHALMIQSANNSAVALAEHIAKTEQDFAHLMNQTAKQLEL 210

Query: 172 QN-TIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIIT 225
              T + NASGL + +      T  D A L   L  ++P+      +R+ +  +++ ++T
Sbjct: 211 SEATKFVNASGLQEPDGSETKMTVADVAKLAYHLVTDYPEILDVTHLRQSQLAFKSTMVT 270

Query: 226 NHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           + N++LN       +  +DG+KTG+T ++G+    + +  D  +V VVMG  +  +R  +
Sbjct: 271 STNEMLNPANQGLYLEGMDGLKTGFTDSAGYCFTGTAKQGDKRLVTVVMGTKSQMKRFTE 330

Query: 280 ALELITSFLE 289
             +L++   E
Sbjct: 331 THKLMSYGFE 340


>gi|262370309|ref|ZP_06063635.1| penicillin-binding protein 6B [Acinetobacter johnsonii SH046]
 gi|262314651|gb|EEY95692.1| penicillin-binding protein 6B [Acinetobacter johnsonii SH046]
          Length = 436

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 76/274 (27%), Positives = 127/274 (46%), Gaps = 14/274 (5%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDE-PRYPASL 80
           + +      LF      + A+ L+  P      +  V D    Q+         R PASL
Sbjct: 2   KAVIYFIATLFALCSSFTQAALLNIVPETVEAQAWTVFDSQSGQVIAEHNSHVQRAPASL 61

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGILALITR 138
           TKMM  YI  + + + KL+ +  +  +   +T   + S++YLK+    + +Q +  L+  
Sbjct: 62  TKMMVAYIALKEINAGKLNKSEILTATPVVSTVMWDESQMYLKQGEQISVDQLLAGLVVM 121

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           SAND +    E ISG    F   M+ +AK +GM  T ++N +G+      +TA D A+LG
Sbjct: 122 SANDAAVTLAERISGDIPNFVARMNQEAKALGMTETHFQNPAGITMPEHYSTAHDLALLG 181

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             L    P Y  Y   + F Y  R     N LL +   +DG+KTGYT+ +G+N+  +   
Sbjct: 182 QALVNETPDYLYYSKQQSFSYNQRFHRATNVLLKQDPTVDGLKTGYTKAAGYNLALTANR 241

Query: 259 -------KDDPIVAVVMGMPTSQERDQKALELIT 285
                   +  +V +V+G  ++ +R + A  L+ 
Sbjct: 242 PTMNPDNPNRRLVVIVLGTESATKRAEVAHNLMN 275


>gi|30020090|ref|NP_831721.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
 gi|29895640|gb|AAP08922.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
          Length = 279

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 71/258 (27%), Positives = 137/258 (53%), Gaps = 16/258 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E++AK   ++++ID +   +   + ++E   PAS++KMMT Y++ E + + K+    
Sbjct: 21  IPPEINAK---AAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVRWED 77

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ SEK F  LM
Sbjct: 78  PVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFVQLM 137

Query: 163 SNKAKKIGM-QNTIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
             KAK++ M ++  + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 138 DAKAKQLKMSEHAKFANASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLRQSQ 197

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         +DG+KTG+T ++G+    + +  D+ I+ VVMG 
Sbjct: 198 LAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVVMGT 257

Query: 271 PTSQERDQKALELITSFL 288
            +  +R  +  +L++   
Sbjct: 258 SSKTKRFTETNKLMSYAF 275


>gi|255528214|ref|ZP_05395035.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           carboxidivorans P7]
 gi|255508087|gb|EET84506.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           carboxidivorans P7]
          Length = 411

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 82/329 (24%), Positives = 144/329 (43%), Gaps = 29/329 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY----SSIVIDVNKNQMTGFKQDEPRYP-A 78
           +++ +  M   +FL +  +S+ ++  A P      S +++D     +   K ++  YP A
Sbjct: 1   MKKLLIFMMSFVFL-LSSVSLKAQAKADPPTVSADSVVLMDAITGYVLYGKNEDSAYPPA 59

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           S TK+MT  +  E     K  L+  + V K     + SK+YL E         +  L+ +
Sbjct: 60  STTKLMTALLTLE-----KCKLDDVVTVGKNPPLVDGSKIYLFEGEQLKVRDLLYGLMLQ 114

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND + A  E + GS   FA+LM+ +A ++G +++ + N SGL+D+   T+ARD A++ 
Sbjct: 115 SGNDCAEALAEHVGGSIDNFAVLMNKRALELGCRDSHFVNPSGLYDEKHKTSARDLALIM 174

Query: 199 ILLRKNFPQYYKYFSIRKFRYR-------NRIITNHNKLLNK-----MHNIDGIKTGYTR 246
             L  N P+Y +  S   +           R + N NKL+ K          G KTGYT 
Sbjct: 175 RELS-NKPEYTQIASTSFYEIPPTNKSAVKRPLWNENKLIQKSSQLYYDGCKGGKTGYTT 233

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSS 306
            S  + V+        ++ V +     +     A+ L        T +    ++K +L +
Sbjct: 234 QSLHSYVSYSTRNGQRLI-VALVHDKDKTFFPDAVNLFNYGF--STFESVLLYKKGDLVA 290

Query: 307 TSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           T     + +  L    S F  +  K  +T
Sbjct: 291 TYSNNGVTVPLL--AASDFYYVKLKEDTT 317


>gi|228956454|ref|ZP_04118252.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|229039918|ref|ZP_04189684.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH676]
 gi|229107699|ref|ZP_04237337.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock1-15]
 gi|229125530|ref|ZP_04254564.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BDRD-Cer4]
 gi|229142819|ref|ZP_04271263.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BDRD-ST24]
 gi|229148422|ref|ZP_04276680.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus m1550]
 gi|296500847|ref|YP_003662547.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
 gi|228635031|gb|EEK91602.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus m1550]
 gi|228640633|gb|EEK97019.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BDRD-ST24]
 gi|228657914|gb|EEL13718.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus BDRD-Cer4]
 gi|228675739|gb|EEL30945.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock1-15]
 gi|228727408|gb|EEL78599.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH676]
 gi|228803211|gb|EEM50031.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|296321899|gb|ADH04827.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
          Length = 415

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 74/322 (22%), Positives = 139/322 (43%), Gaps = 40/322 (12%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A 
Sbjct: 18  AGAAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAY 77

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                 + S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K
Sbjct: 78  KVSQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSK 137

Query: 168 KIGMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           ++G++N  + N++GL               D+    +A+D A L   L K++P+      
Sbjct: 138 ELGLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAK 197

Query: 214 IRKFRYR----NRIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           I K  +R       ++N N +L         +DG+KTG T  +G     ++       ++
Sbjct: 198 IPKKEFRPEKEKFGMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFIS 257

Query: 266 VVMGMPTSQERDQKALELITSFLEK----------KTLKHQQTHRKDNLSSTSL---KKS 312
           VV+   +   R  +  +L                  ++K Q+T R +N     +    K 
Sbjct: 258 VVIKTSSHTARFDETKKLYDYGFANFEVKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQ 317

Query: 313 LMIKKLKRTYSQFKKIDAKAHS 334
            +   + +      K + K  S
Sbjct: 318 AISLPVPKGSKDVYKTELKESS 339


>gi|150391165|ref|YP_001321214.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus
           metalliredigens QYMF]
 gi|149951027|gb|ABR49555.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus
           metalliredigens QYMF]
          Length = 257

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 72/256 (28%), Positives = 133/256 (51%), Gaps = 6/256 (2%)

Query: 44  MASELHAKPKYSSIVIDVN-KNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLN 101
           M   + A+   ++I+   +  N++   K    R P AS+TK+MT+ ++ + + + K+   
Sbjct: 1   MGKTILAQNARAAILFKASPNNKVLFQKHATKRLPIASITKLMTMLVLLDGIDAGKIKWT 60

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
            ++ +S  AA+   SK++LK            ++I  SAND + A  E +SG+   F   
Sbjct: 61  DKVEMSPAAASLYGSKIHLKPGEKLPVGDMFKSMIIASANDAAIALAEHLSGTMDNFIDK 120

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL--GILLRKNFPQY--YKYFSIRKF 217
           M+ KAK +G++N+ + N+ GL + N  ++A D   +    L R+   +Y   KY  IRK 
Sbjct: 121 MNQKAKTLGLKNSHFVNSHGLFEDNHYSSAIDIVKMVSMALRREEILKYSRLKYDYIRKE 180

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
             + + + N NKL+  +  +DG+KTGYT  +G  +  +    +  ++AVV+G P    RD
Sbjct: 181 DNQLQKLVNTNKLIGTIPEVDGLKTGYTPLAGCCLAATALKDNVRLIAVVLGEPRKAVRD 240

Query: 278 QKALELITSFLEKKTL 293
           ++ +E++    +   L
Sbjct: 241 KEVIEMLNYGFKASLL 256


>gi|229178819|ref|ZP_04306179.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus 172560W]
 gi|228604584|gb|EEK62045.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus 172560W]
          Length = 416

 Score =  235 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 138/306 (45%), Gaps = 30/306 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S+ A 
Sbjct: 20  AGSAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAH 79

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K
Sbjct: 80  KISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSK 139

Query: 168 KIGMQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFS 213
           + GM++  + N++GL               D+    +ARD AIL   L ++FPQ      
Sbjct: 140 EFGMKDYKFVNSTGLTNQDLKGYHLEGTTLDEKNKMSARDCAILAQRLIQDFPQILNTAK 199

Query: 214 IRKFRYRN-----RIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           I K  ++        + N N +L     +   +DG+KTG T  +G     ++      ++
Sbjct: 200 IPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLI 259

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
           +VV+   +   R  +  +L         +K+   + KD++        +   K K    Q
Sbjct: 260 SVVIKAKSHTARFDETKKLYDYGFANFEVKN--VYGKDSVIKGHETVRVANAKDKDVVVQ 317

Query: 325 FKKIDA 330
            K+  +
Sbjct: 318 TKQAVS 323


>gi|239623520|ref|ZP_04666551.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521551|gb|EEQ61417.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 427

 Score =  235 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 74/287 (25%), Positives = 126/287 (43%), Gaps = 29/287 (10%)

Query: 53  KYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++++D +  ++   K QD  R  AS TK+MT  +  E       +L+ ++  S  AA
Sbjct: 48  AQSAVLMDGSSGRILYGKGQDIIRPMASTTKIMTCILALELG-----NLDDKVTASSYAA 102

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +Q    L ++    +  E  + AL+  S ND +    E I GS + FA LM+ KA+++G 
Sbjct: 103 SQPKVHLGVRSGEEYRLEDLLYALMLESYNDAAVMIAENIGGSVEDFAALMNQKAEELGC 162

Query: 172 QNTIYKNASGLH----DKN-----QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
           ++T +   +GL     DK+       TTA D A +        P+  ++ SI + +    
Sbjct: 163 RDTYFITPNGLDGVKKDKDGVEHIHSTTAADLAAIMRYCVMESPKKEEFLSITRTQNHTF 222

Query: 223 I---------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM--- 270
                       NHN  LN M  +   KTG+T  +G++ V ++       V  ++G    
Sbjct: 223 TDSSGRRSYSCFNHNAFLNMMEGVLSGKTGFTGGAGYSYVGAMENDGRTYVIALLGCGWP 282

Query: 271 PTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKK 317
           P    +   A +L T  LE   LK     R++ L    +   L  ++
Sbjct: 283 PHKTYKWADARKLYTYGLEHFQLK--DVFREEVLPDIPVTGGLCWEE 327


>gi|154498460|ref|ZP_02036838.1| hypothetical protein BACCAP_02449 [Bacteroides capillosus ATCC
           29799]
 gi|150272528|gb|EDM99713.1| hypothetical protein BACCAP_02449 [Bacteroides capillosus ATCC
           29799]
          Length = 454

 Score =  235 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 78/346 (22%), Positives = 134/346 (38%), Gaps = 35/346 (10%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP---------KYSSIVIDVNKNQMTGFKQDEPR- 75
           +  ++   +L L++I   +A    A             S+I++D    ++        R 
Sbjct: 2   KKNRVFSLVLTLALICAVLAPFSTAAANSVDDYVVNARSAILVDTTYGEILYEHNSHERT 61

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT---QNPSKLYLKEKTYFTTEQGI 132
           YPAS+TK+MT  +  E +   +L L+ QI VS           S   LK     T +  +
Sbjct: 62  YPASITKVMTGLLTIEAIDRGELSLDQQITVSSNVNDGMMSGASTQNLKSGEVLTLKDVL 121

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
              +  SAN+      E ++GS   F  LM+ +A ++G ++T + N  GLHD+N  TTA 
Sbjct: 122 ACALIPSANEACNVLAETVAGSIDAFVELMNQRAAELGCEDTHFMNPHGLHDENHYTTAY 181

Query: 193 DQAILGILLRKN--FPQY---YKYFSIRKFRYRNRIITNHNKLLNK-------MHNIDGI 240
           D  +      K+  F +      Y          R   + N L+              GI
Sbjct: 182 DIYLFCNEAMKHDIFRELVTSMNYTVPATNMSEERTFWDTNALITSWKYKGYTYEYCTGI 241

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP--------TSQERDQKALELITSFLEKKT 292
           KTGYT  +G+ + ++    D  ++AVV G                 ++ +L+       +
Sbjct: 242 KTGYTPEAGYCLASAATKGDRSLIAVVTGCERTPGATGSEGYTHFSESKKLLEWGFSNFS 301

Query: 293 LKHQQTHRKDNLS--STSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
            +   +  K  LS   T  +   ++ +   T S     D  A   +
Sbjct: 302 YQSIMSSSKPQLSIPVTLSETDHVVAEPNGTLSAVLPNDVSAEDFE 347


>gi|229150695|ref|ZP_04278909.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus m1550]
 gi|228632782|gb|EEK89397.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus m1550]
          Length = 416

 Score =  235 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 139/306 (45%), Gaps = 30/306 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S+ A 
Sbjct: 20  AGSAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAH 79

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K
Sbjct: 80  KISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSK 139

Query: 168 KIGMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFS 213
           + GM++  + N++GL +++                 +ARD AIL   L ++FPQ      
Sbjct: 140 EFGMKDYKFVNSTGLTNQDLKGYHLEGTTLEEKNKMSARDCAILAQRLIQDFPQILNTAK 199

Query: 214 IRKFRYRN-----RIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           I K  ++        + N N +L     +   +DG+KTG T  +G     ++      ++
Sbjct: 200 IPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLI 259

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
           +VV+   +   R  +  +L         +K+   + KD++        +   K K    Q
Sbjct: 260 SVVIKAKSHTARFDETKKLYDYGFANFEVKN--VYGKDSVIKGHETVRVANAKDKDVVVQ 317

Query: 325 FKKIDA 330
            K+  +
Sbjct: 318 TKQAVS 323


>gi|222086014|ref|YP_002544546.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium
           radiobacter K84]
 gi|221723462|gb|ACM26618.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium
           radiobacter K84]
          Length = 403

 Score =  235 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 70/282 (24%), Positives = 130/282 (46%), Gaps = 15/282 (5%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQ-DEPRYPA 78
           + R   +    L     + ++A +            + +++ +   +   K  D+   PA
Sbjct: 1   MLRRFTVAFFFLVGIGCLPAVAQQAPPPAFDTKATQAFMVEASTGTILLAKNADQQISPA 60

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGIL 133
           SL K+MTL +IF+ ++  ++ L+T+ PVS+ A          S ++   K+       I 
Sbjct: 61  SLAKLMTLDVIFDAIKRGEISLDTEYPVSENAWRTGGAPSRTSTMFAVLKSRVRVGDLIQ 120

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-----QI 188
            +  + AND      E IS SEK+FA  M+ +A++IGM   ++ N++GL D N       
Sbjct: 121 GIAVQQANDSCIVLAEGISISEKEFARRMTARAREIGMPRAVFTNSTGLPDANDQNGGGK 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
            + R+   L   L++N+P +YKY +   F +      N N LL     +DG+  G+    
Sbjct: 181 VSVRELVTLAQDLQQNYPDFYKYLAQPDFTWNKIFQRNRNPLLPLNIGVDGLGLGFADGE 240

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           G++IV S+      +   + G+ T +ER +++  ++   L  
Sbjct: 241 GYSIVASIERDGRRLFLALGGLKTDKERTEESRRVLEWGLSN 282


>gi|331270026|ref|YP_004396518.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum
           BKT015925]
 gi|329126576|gb|AEB76521.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum
           BKT015925]
          Length = 412

 Score =  235 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 74/262 (28%), Positives = 120/262 (45%), Gaps = 23/262 (8%)

Query: 47  ELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
            +   P  S+   +++D N  Q+   K  D    PAS TK+MT  +  E  +     L+ 
Sbjct: 24  AIDTPPTVSADGVVLMDKNTGQVLYSKNLDTQYPPASTTKIMTALLTLENCK-----LDD 78

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + V K A   + SK+YL E    T +  + AL+ +SAND + A  E ++GS K+F  LM
Sbjct: 79  VVTVGKNAVNVDGSKVYLFEGEKLTVKDLLYALLLQSANDSAVALSEHVAGSTKEFVNLM 138

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-- 220
           + KAK++G +NT + N  GL+D    TTARD  ++   L K   ++ +  +   +     
Sbjct: 139 NKKAKELGCKNTNFVNPHGLYDDKHRTTARDLGLILRELSK-HEEFKQIATTSMYYINPT 197

Query: 221 -----NRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
                 R I N +KL+ K         +G KTGYT  S  + V +    +  ++AV++  
Sbjct: 198 NKETKKRPIWNKDKLIQKNSKCYYEGCEGGKTGYTIQSKHSFVATATRNNKSLIAVLLH- 256

Query: 271 PTSQERDQKALELITSFLEKKT 292
                     ++L        T
Sbjct: 257 DAKHTYWDDVIKLFDYGFNNYT 278


>gi|323704241|ref|ZP_08115820.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323536307|gb|EGB26079.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 457

 Score =  235 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 70/282 (24%), Positives = 129/282 (45%), Gaps = 23/282 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           +++ + ++  I+FL I  I     +   P+    +++++D    Q+   K  ++  YPAS
Sbjct: 1   MKKIVSIITVIIFL-INFIPKVYGMENPPQIVGPTAVLMDFTTGQVLYDKNMNQRMYPAS 59

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
            TK++T  I  E     K  LN  + V+      + + +YL      T EQ + A++  S
Sbjct: 60  TTKILTAIIAIE-----KGKLNDVVTVNDDVKNIDGNSIYLVPGEKLTLEQLLYAMLLES 114

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AND + A  + I GS + FA LM+ KAK+IG +++ + N +GL +    +T  D A++  
Sbjct: 115 ANDAAIAVADHIGGSIQGFANLMNEKAKEIGAKDSHFVNPNGLPNTEHYSTPYDMALIAR 174

Query: 200 LLRKNFPQYYKYFSIRKFRY-------RNRIITNHNKLLNK----MHNIDGIKTGYTRNS 248
              +N   + K  S   ++        + R +   N+L+          DG+KTGYT  +
Sbjct: 175 YAMRN-ATFRKIVSTIHYQIPPTNKFDKPRDLWISNRLIKPTSFHYDGADGVKTGYTIAA 233

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
               V S       +++V+MG   +       ++L+      
Sbjct: 234 NQVFVGSATRNGHRLISVIMGDEGTNI-WTDTIKLLNYGFNN 274


>gi|295706466|ref|YP_003599541.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium DSM 319]
 gi|294804125|gb|ADF41191.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium DSM 319]
          Length = 382

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 84/328 (25%), Positives = 143/328 (43%), Gaps = 34/328 (10%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKM 83
           +++I  +  +L       S++S   +   +S+I+++    ++   K  +     AS+TK+
Sbjct: 5   KKSIIYLFIVLLCLSGWPSISSAAGSVSAHSAILMEQKSGRVLYAKNADQVSRIASITKI 64

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT  +  E   S K+  N  + VS +A     S +YL E      +  +  L+ RS ND 
Sbjct: 65  MTAILAIE---SGKI--NKTVTVSHSAVGVEGSSVYLIEGEKIKLKDLVYGLMLRSGNDA 119

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLR 202
           + A  E + GSE  F  LM+ KA++IGM NT ++N  GL D +N  +TA D A+L     
Sbjct: 120 AVAIAEAVGGSEDGFVYLMNKKAEEIGMTNTTFQNPHGLDDHENHRSTAHDMALLMRYAM 179

Query: 203 KNFPQYYKYFSIRKFRYR------NRIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTS 255
            N   + +    + +R +      +R+  N NKLL        G KTGYT+ +   +VT+
Sbjct: 180 NN-KIFKEISGTKVYRMKHPEEKWDRVWKNKNKLLTTLYAYCTGGKTGYTKLAKRTLVTT 238

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK----------------TLKHQQTH 299
                  ++AV +  P         + +  +  +K                 +    Q +
Sbjct: 239 ATKDGMDLIAVTINAPDD---WNDHISMYENAFDKYDMTSLASKGELADIKNSFYKDQLY 295

Query: 300 RKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
            K N+     KK     ++K T  Q KK
Sbjct: 296 IKRNVVYPLTKKEQSSVEVKTTLIQPKK 323


>gi|89099074|ref|ZP_01171953.1| DacB [Bacillus sp. NRRL B-14911]
 gi|89086204|gb|EAR65326.1| DacB [Bacillus sp. NRRL B-14911]
          Length = 376

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 82/299 (27%), Positives = 132/299 (44%), Gaps = 26/299 (8%)

Query: 35  LFLSIIMISMASELHAK-------PKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTL 86
           + LS I   +A+ L AK          S+I+++ +  ++   K     +  AS+TK+MT 
Sbjct: 1   MLLSCIAAVLAANLPAKVQAAYSASSGSAILMEQSTGRILYEKDAYTKKRIASITKIMTA 60

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            +  E  +     L+T+  VS+ A     S +YL+       E  +  L+ RS ND + A
Sbjct: 61  ILAIESGK-----LDTKAKVSEKAVRAEGSSIYLQPGEKILLEDLVYGLMLRSGNDSAVA 115

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLRKNF 205
             E + GS + F  LM+ KA++IGM NT + N  GL D +   +TA D A+L      N 
Sbjct: 116 IAEHVGGSLEGFVYLMNKKAEEIGMINTHFANPHGLDDHEEHYSTAYDMAVLTRYAMNN- 174

Query: 206 PQYYKYFSIRKFRYRN------RIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             Y K    +  R  N      R+  N N+LL        G KTGYT+ +   +VT+   
Sbjct: 175 ETYRKIAGTKMHRAPNPNESWDRVWKNKNRLLTEMYEYCTGGKTGYTKRAKRTLVTTASK 234

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKD-NLSSTSLKKSLMIK 316
               ++AV +  P         + +  S  ++ +LK          L  T+ +K   +K
Sbjct: 235 DGLDLIAVTLNGPDD---WNDHIGMYESGFKEYSLKKVVEQGGIRELEDTAYEKKAFLK 290


>gi|218682277|ref|ZP_03529878.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli CIAT 894]
          Length = 408

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 66/245 (26%), Positives = 122/245 (49%), Gaps = 6/245 (2%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A     + +I+     +   K  D+   PASL K+MT+ ++FE +   ++ L+T+ PVS+
Sbjct: 41  ATKAEQAYMIEAATGTVLLAKNEDQGFSPASLAKLMTMDLVFEAVTKGQITLDTEYPVSE 100

Query: 109 TAATQNPS-----KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            A     +      ++   K+    E  I  +  + AND      E ++G+E++FA  M+
Sbjct: 101 YAWRTGGAPSRAATMFASLKSRVRVEDLIKGVAIQGANDSCIILAEGMAGTEQQFAESMT 160

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI 223
            +A+++GM+   + N++GL D     TAR+   L   L++++P  Y YF+   F +    
Sbjct: 161 RRARELGMEKAEFGNSTGLPDGKSKVTAREMVTLATALQQSYPNLYPYFAQPDFEWNKIF 220

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
             N N LL      DG+ TG+T   G++IV S+      +   + G+ + +ER ++A  +
Sbjct: 221 QRNRNPLLGLDLGADGLATGFTEGEGYSIVASVERDGRRLFLALAGIASDKERTEEAKRV 280

Query: 284 ITSFL 288
           +   L
Sbjct: 281 LEWGL 285


>gi|260888699|ref|ZP_05899962.1| serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena
           ATCC 35185]
 gi|260861568|gb|EEX76068.1| serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena
           ATCC 35185]
          Length = 438

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 78/274 (28%), Positives = 129/274 (47%), Gaps = 24/274 (8%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           + A+E       S+I+I+ +  ++   K  D PR+PAS TKMMT  +  E        L+
Sbjct: 83  AGAAENIQITAASAILIEASTGRVLYEKAADVPRFPASTTKMMTCVLAIEEGD-----LS 137

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
           + + VS+TAA    +++       F   + +  ++ RS N  S A  E ++GS   FA  
Sbjct: 138 SILTVSRTAAETEDTEVG--AGDRFVLAELVAEMMLRSDNGASVAIAEDLAGSVGSFAAH 195

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           M+ KAK IG ++T + N +GL D   ++TA D A +     KN P++  +   ++   R 
Sbjct: 196 MNEKAKAIGAKDTHFLNPNGLPDPAHVSTAHDIARIAAYGMKN-PKFRSFVGTKE---RE 251

Query: 222 RIIT----------NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
                         N N+LL+      GIKTGYT  +G  +  S R     ++AVV+G  
Sbjct: 252 ITWVTPEKKRARMANTNRLLSTYEGATGIKTGYTNAAGGCLAASARRGGVELIAVVLGAA 311

Query: 272 TSQERDQKALELITSFLEKKTLKHQQTHRKDNLS 305
             + R   A +L+     +  +K    + K +L+
Sbjct: 312 DEEARFSDAAKLLDMGFRR--VKAAPAYTKTDLA 343


>gi|226952491|ref|ZP_03822955.1| D-ala-D-ala-carboxypeptidase, penicillin-binding protein
           [Acinetobacter sp. ATCC 27244]
 gi|226836762|gb|EEH69145.1| D-ala-D-ala-carboxypeptidase, penicillin-binding protein
           [Acinetobacter sp. ATCC 27244]
          Length = 445

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 114/243 (46%), Gaps = 10/243 (4%)

Query: 53  KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK--T 109
             +  ++D    Q+         R PASLTKMM  Y+  + +++ KL        +    
Sbjct: 40  AQAWSIVDAQSGQIIAEHNSHVQRAPASLTKMMVAYVALKEIEAGKLRKEDVTTATSVVN 99

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
               + S++YLKE    + +Q +  LI  SAND +    E ISGS  +F I M+ +A+ +
Sbjct: 100 TVMWDESQMYLKEGEQISVDQLLAGLIVMSANDAALTLAEKISGSVPQFIIRMNQEAQAL 159

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM++T + N +G+   +  +TA D  +L   +    P+Y  Y  +  F Y  R     N 
Sbjct: 160 GMKDTHFSNPAGITMPDHYSTAADLGLLAQAIVTKTPEYLYYSKMPSFSYNQRFHRATNL 219

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMPTSQERDQKALE 282
            L      DG+KTG+T+ +G+N+  +              ++ +V+G P +  R + A +
Sbjct: 220 ALKIDPTADGLKTGFTKAAGYNLALTAERPTLNPHIDKRRLIVIVLGTPNAITRAEVANK 279

Query: 283 LIT 285
           L+ 
Sbjct: 280 LMN 282


>gi|229176613|ref|ZP_04304020.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus 172560W]
 gi|228606860|gb|EEK64274.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus 172560W]
          Length = 415

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 74/322 (22%), Positives = 139/322 (43%), Gaps = 40/322 (12%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A 
Sbjct: 18  AGAAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAY 77

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                 + S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K
Sbjct: 78  KVSQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSK 137

Query: 168 KIGMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           ++G++N  + N++GL               D+    +A+D A L   L K++P+      
Sbjct: 138 ELGLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAK 197

Query: 214 IRKFRYR----NRIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           I K  +R       ++N N +L         +DG+KTG T  +G     ++       ++
Sbjct: 198 IPKKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFIS 257

Query: 266 VVMGMPTSQERDQKALELITSFLEK----------KTLKHQQTHRKDNLSSTSL---KKS 312
           VV+   +   R  +  +L                  ++K Q+T R +N     +    K 
Sbjct: 258 VVIKTSSHTARFDETKKLYDYGFANFEVKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQ 317

Query: 313 LMIKKLKRTYSQFKKIDAKAHS 334
            +   + +      K + K  S
Sbjct: 318 AISLPVPKGSKDVYKTELKESS 339


>gi|228937316|ref|ZP_04099964.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228950561|ref|ZP_04112697.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228970202|ref|ZP_04130863.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228976772|ref|ZP_04137186.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis Bt407]
 gi|229067777|ref|ZP_04201096.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus F65185]
 gi|229077286|ref|ZP_04209969.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock4-2]
 gi|229188298|ref|ZP_04315349.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus ATCC 10876]
 gi|228595166|gb|EEK52934.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus ATCC 10876]
 gi|228706009|gb|EEL58314.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock4-2]
 gi|228715330|gb|EEL67187.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus F65185]
 gi|228782934|gb|EEM31098.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis Bt407]
 gi|228789503|gb|EEM37421.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228809104|gb|EEM55587.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228822341|gb|EEM68321.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|326937806|gb|AEA13702.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 415

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 74/322 (22%), Positives = 139/322 (43%), Gaps = 40/322 (12%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A 
Sbjct: 18  AGAAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAY 77

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                 + S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K
Sbjct: 78  KVSQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSK 137

Query: 168 KIGMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           ++G++N  + N++GL               D+    +A+D A L   L K++P+      
Sbjct: 138 ELGLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAK 197

Query: 214 IRKFRYR----NRIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           I K  +R       ++N N +L         +DG+KTG T  +G     ++       ++
Sbjct: 198 IPKKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFIS 257

Query: 266 VVMGMPTSQERDQKALELITSFLEK----------KTLKHQQTHRKDNLSSTSL---KKS 312
           VV+   +   R  +  +L                  ++K Q+T R +N     +    K 
Sbjct: 258 VVIKTSSHTARFDETKKLYDYGFANFEVKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQ 317

Query: 313 LMIKKLKRTYSQFKKIDAKAHS 334
            +   + +      K + K  S
Sbjct: 318 AISLPVPKGSKDVYKTELKESS 339


>gi|16079376|ref|NP_390200.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310236|ref|ZP_03592083.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*)
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|221314560|ref|ZP_03596365.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*)
           [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221319482|ref|ZP_03600776.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*)
           [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221323758|ref|ZP_03605052.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*)
           [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321311791|ref|YP_004204078.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5]
 gi|461914|sp|P35150|DACB_BACSU RecName: Full=D-alanyl-D-alanine carboxypeptidase dacB;
           Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
           Full=Penicillin-binding protein 5*; Short=PBP-5*; Flags:
           Precursor
 gi|410134|gb|AAA67490.1| penicillin-binding protein [Bacillus subtilis subsp. subtilis str.
           168]
 gi|2634754|emb|CAB14251.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*)
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|320018065|gb|ADV93051.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5]
          Length = 382

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 76/317 (23%), Positives = 140/317 (44%), Gaps = 14/317 (4%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKM 83
           ++ + ++     ++ + ++ A         S+I+ID    ++   K +   R  AS+TK+
Sbjct: 5   KKAVFVIMISFLIATVNVNTAHAAIDVSAKSAIIIDGASGRVLYAKDEHQKRRIASITKI 64

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT  +  E  +     ++  + VS  A     S +YL E      +  +  L+ RS ND 
Sbjct: 65  MTAVLAIESGK-----MDQTVTVSANAVRTEGSAIYLTEGQKVKLKDLVYGLMLRSGNDA 119

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLR 202
           + A  E + GS   F  +M+ KA+++GM+NT ++N  GL D +N  +TA D AIL     
Sbjct: 120 AVAIAEHVGGSLDGFVYMMNQKAEQLGMKNTRFQNPHGLDDHENHYSTAYDMAILTKYAM 179

Query: 203 KNFPQYYKYFSIRKFRYRNR--IITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYK 259
           K    Y K    + ++      +  N NKLL        G KTGYT+ +   +V++    
Sbjct: 180 K-LKDYQKISGTKIYKAETMESVWKNKNKLLTMLYPYSTGGKTGYTKLAKRTLVSTASKD 238

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKK-L 318
              ++AV +  P   +   K    +    +   +  +    K  L  T  +    IK+ +
Sbjct: 239 GIDLIAVTINDPNDWDDHMKMFNYVFEHYQTYLIAKKGDIPK--LKGTFYESKAFIKRDI 296

Query: 319 KRTYSQFKKIDAKAHST 335
               ++ +K + K ++T
Sbjct: 297 TYLLTEEEKENVKINTT 313


>gi|294501119|ref|YP_003564819.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium QM B1551]
 gi|294351056|gb|ADE71385.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium QM B1551]
          Length = 382

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 84/328 (25%), Positives = 142/328 (43%), Gaps = 34/328 (10%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKM 83
           +++I  +  +L       S +S   +   +S+I+++    ++   K  +     AS+TK+
Sbjct: 5   KKSIIYLFIVLLCLSGWPSTSSAAGSVSAHSAILMEQKSGRVLYAKNADQVSRIASITKI 64

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT  +  E   S K+  N  + VS +A     S +YL E      +  +  L+ RS ND 
Sbjct: 65  MTAILAIE---SGKI--NKTVTVSHSAVGVEGSSVYLVEGEKIKLKDLVYGLMLRSGNDA 119

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLR 202
           + A  E + GSE  F  LM+ KA++IGM NT ++N  GL D +N  +TA D A+L     
Sbjct: 120 AVAIAEAVGGSEDGFVYLMNKKAEEIGMTNTTFQNPHGLDDHENHRSTAHDMALLMRYAM 179

Query: 203 KNFPQYYKYFSIRKFRYR------NRIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTS 255
            N   + +    + +R +      +R+  N NKLL        G KTGYT+ +   +VT+
Sbjct: 180 NN-KIFKEISGTKVYRMKHPEEKWDRVWKNKNKLLTTLYAYCTGGKTGYTKLAKRTLVTT 238

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK----------------TLKHQQTH 299
                  ++AV +  P         + +  +  +K                 +    Q +
Sbjct: 239 ATKDGMDLIAVTINAPDD---WNDHISMYENAFDKYDMTSLAAKGELADIKDSFYKDQLY 295

Query: 300 RKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
            K N+     KK     ++K T  Q KK
Sbjct: 296 IKRNVVYPLTKKEQSSVEVKTTLIQPKK 323


>gi|167772310|ref|ZP_02444363.1| hypothetical protein ANACOL_03687 [Anaerotruncus colihominis DSM
           17241]
 gi|167665413|gb|EDS09543.1| hypothetical protein ANACOL_03687 [Anaerotruncus colihominis DSM
           17241]
          Length = 384

 Score =  235 bits (600), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 62/265 (23%), Positives = 118/265 (44%), Gaps = 20/265 (7%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             +++V+D    ++   K    R P AS TK+M+  +  E  Q  +   +    V   A 
Sbjct: 47  AKAAVVLDAATGRVLFAKNANARLPMASTTKIMSTLLTLE--QDGQ---DEWFTVDPDAI 101

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S + L+     T       ++  S ND + A    I+GS++ FA +M+ +A ++GM
Sbjct: 102 RVEGSSMGLRVGDRVTLSALAYGMMLPSGNDAANAAAVRIAGSKEAFARMMNERAAELGM 161

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRN----RIIT 225
           +++ +   SGL D    ++A D A+L      N P++ +  S +  +  + N    R  +
Sbjct: 162 EDSHFVTPSGLDDNAHYSSAYDMALLTREALSN-PRFAEICSQKSAKVCFGNPPADRWFS 220

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           NHN+LL    +  G+KTG+T  +G  +V+  +     ++ V +  P       + ++L  
Sbjct: 221 NHNRLLKLYPDAAGVKTGFTDAAGRCLVSYAQRGGVRLIVVTLNCPDD---WNEHIKLYE 277

Query: 286 SFLEKKTLKHQQTHRKDNLSSTSLK 310
            +    T    QT   + + +  L 
Sbjct: 278 HYFGALT----QTAPGEMIPAADLP 298


>gi|146296850|ref|YP_001180621.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410426|gb|ABP67430.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 377

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 76/285 (26%), Positives = 134/285 (47%), Gaps = 22/285 (7%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHA-------KPKYSSIVIDVNKNQMTGFKQ-DEPR 75
           + + I+    ++ +S+ ++S ++E +A           S+I I+    ++   K  D   
Sbjct: 1   MSKKIKFSVLLVIVSLRILSYSNECYAGLKCDIQVTAKSAIAIEWITGKILFEKNKDLKL 60

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
             AS TK+MT  +  E        LN +I +   A     S +YL++       + +  L
Sbjct: 61  PMASTTKIMTAILAIENCD-----LNKEIEIPAQAIGVPGSSIYLEKGERLKIIELLYGL 115

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S ND + A    + G  KKF  LM+ KAK++G++NT++ +  GL +    TTA D A
Sbjct: 116 MLASGNDAAAALAISVCGDVKKFVNLMNKKAKELGLENTMFSSPHGLEEGEHYTTAHDLA 175

Query: 196 ILGILLRKNFPQYYKYFSI--RKFRYRNR----IITNHNKLLNKMHNIDGIKTGYTRNSG 249
            L     KN   + +  S   ++ R+  R    ++ N NK+L      +G+KTG+T+ +G
Sbjct: 176 RLTAYAMKN-QTFREIVSTTQKEIRWTTRPYSRVLKNKNKMLKSYQGAEGVKTGFTKRAG 234

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
             +VTS    D  ++ VV+  P      +K L+   ++   K LK
Sbjct: 235 RCLVTSACRDDFRVICVVLNAPDMWNDTKKILD--FAYQNYKILK 277


>gi|218289386|ref|ZP_03493620.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240492|gb|EED07673.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 456

 Score =  235 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 110/241 (45%), Gaps = 11/241 (4%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             +++V+D++   +   K      YPAS+TK+MT       L  +   L   +  S  A 
Sbjct: 71  SQAAVVMDMDTGAVVYAKHPTALHYPASITKIMTA-----LLALRLGRLTDVLTASPDAV 125

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            Q P KLY++     T +  +  L+  SAND +    E   GS   FA +M+ +A+ +G 
Sbjct: 126 RQPPDKLYMRVGEKATLKDLLYGLLIDSANDAAVEIAERYGGSVAHFADMMNAEARALGA 185

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR----IITNH 227
            +T + N SGL D   +TTA D A++     +  P++      R + ++       +TN 
Sbjct: 186 THTHFVNPSGLPDPRHVTTAYDMAVIARAAMQ-IPEFRTIVDTRSYEWKGTAWQATLTNL 244

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           N++L       G+KTG+T  +   +V +        +AV+M  PT  E  Q A  L+   
Sbjct: 245 NRMLFTYPGAIGVKTGFTSVAHETLVVAATRGGTTFLAVLMDCPTDAEIRQDATNLLNYA 304

Query: 288 L 288
            
Sbjct: 305 F 305


>gi|228905810|ref|ZP_04069709.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis IBL 200]
 gi|228853818|gb|EEM98576.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis IBL 200]
          Length = 424

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 74/322 (22%), Positives = 140/322 (43%), Gaps = 40/322 (12%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A 
Sbjct: 27  AGAAILVEANSGKIVYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAY 86

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                 + S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K
Sbjct: 87  KVSQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSK 146

Query: 168 KIGMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           ++G++N  + N++GL               D+    +A+D A L   L K++P+      
Sbjct: 147 ELGLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAK 206

Query: 214 IRKFRYR----NRIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           I K  +R       ++N N +L         +DG+KTG T  +G     ++       ++
Sbjct: 207 IPKKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFIS 266

Query: 266 VVMGMPTSQERDQKALELITSFLEK----------KTLKHQQTHRKDNLSSTSLK---KS 312
           VV+   +   R  +  +L                  ++K Q+T R +N     ++   K 
Sbjct: 267 VVIKTSSHTARFDETKKLYDYGFANFEVKQMYKKGSSVKGQETVRVENAKDKDVEVQTKQ 326

Query: 313 LMIKKLKRTYSQFKKIDAKAHS 334
            +   + +      K + K  S
Sbjct: 327 AISLPVPKGSKDVYKTELKESS 348


>gi|148266151|ref|YP_001232857.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacter uraniireducens
           Rf4]
 gi|146399651|gb|ABQ28284.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacter uraniireducens
           Rf4]
          Length = 286

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/272 (27%), Positives = 139/272 (51%), Gaps = 23/272 (8%)

Query: 30  LMGKILFLSIIMISM----ASELHAK-PK-YSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           ++ +I+ L+ +M++     A+E+    P+  S+ ++ +   +    ++   R P ASLTK
Sbjct: 1   MIVRIMLLATLMLAAGNGGAAEVPDPFPRMASAYLVQIQ-GKTVWARRPVRRLPQASLTK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT  ++ E     +  L+  + VS+ AA +  S++ L+    F  E  + A++  SAND
Sbjct: 60  IMTAILVLE-----RCKLDEVVTVSRRAAGETGSRIGLRVGERFRLEDLLAAMLVASAND 114

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
              A  + ++GSE++F  LM+ +A+ +G+ N+ + NA G    N  +TARD AIL     
Sbjct: 115 ACHALADHLAGSEERFVALMNARARGLGLDNSRFANACGHDAPNHYSTARDLAILAETAL 174

Query: 203 KNFPQYYKYFSIRKFRYRN------RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           KN P + +  S ++ + R         + N NKLL +   + G+KTGYT N+G  +V   
Sbjct: 175 KN-PAFGRLVSSKRLKIRTVDRRRAFSLVNRNKLLGRSVGVSGVKTGYTENAGRCLVALA 233

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
                 ++ V++  P    R + A+ +I    
Sbjct: 234 ERDGTRVLLVLLNAPH---RFRDAVVMIERAF 262


>gi|253579997|ref|ZP_04857264.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848516|gb|EES76479.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus sp.
           5_1_39BFAA]
          Length = 419

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 115/243 (47%), Gaps = 15/243 (6%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +++++ +  Q+   K +   +  AS TK+MT  +  E  +     LN ++  S  AA+  
Sbjct: 182 ALLMNADTGQIIYGKNENVAHANASTTKIMTCILALENCK-----LNEKVKFSPYAASIE 236

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           PSKLY      F  +  + +L+  S ND + A  E +SGS  KF  LM+ KA +IG  NT
Sbjct: 237 PSKLYANAGEIFYLKDLLYSLMLPSHNDTAVAIAEHVSGSTAKFVKLMNKKAAEIGCTNT 296

Query: 175 IYKNASGLHDK-NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN------RIITNH 227
            +   +GL    N  TTA D A +     K  P + K  S   + + N        I   
Sbjct: 297 HFATPNGLDAGYNHYTTASDLAKIAQYAIKK-PMFRKLVSTGYYSFSNLNTGRSYSIGTT 355

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVT-SLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           N LL  +  + G+KTGYT  +G+  V  S   + +  ++VV+G  +S  R Q +  L+T 
Sbjct: 356 NALLGNVPGVQGMKTGYTNKAGYCFVGLSYSARGNTYISVVLGADSSSARWQDSRTLLTY 415

Query: 287 FLE 289
              
Sbjct: 416 AYN 418


>gi|167773011|ref|ZP_02445064.1| hypothetical protein ANACOL_04399 [Anaerotruncus colihominis DSM
           17241]
 gi|167664944|gb|EDS09074.1| hypothetical protein ANACOL_04399 [Anaerotruncus colihominis DSM
           17241]
          Length = 763

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 68/308 (22%), Positives = 135/308 (43%), Gaps = 18/308 (5%)

Query: 36  FLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFE 91
           F + +    A EL   P     S+I++D +  Q+   K  ++  YPAS+TK+MT  +  E
Sbjct: 41  FPARVFADDAQELFDPPELYAESAILVDADTGQILLEKNMNKKMYPASITKIMTCLLAME 100

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
             +   +   T   V++    ++ + + L      T EQ   A++  SAND ++     I
Sbjct: 101 RAKPGDVVTVTDEVVAE--VPRDTTHIALTGGEQLTVEQLEYAMMVESANDAASVLAAHI 158

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           SGS + FA+LM+++AK++G ++T + NA+GL D +  T+A D A++     + +P++   
Sbjct: 159 SGSTQAFAMLMNDRAKELGAKDTHFTNANGLPDPSHYTSAYDMALITRAAMQ-YPEFRSL 217

Query: 212 FSIRKFRYR-------NRIITNHNKLL---NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
                +           R + N N +    +        KTG+T  +G  +VT       
Sbjct: 218 AGTTSYEIPPTNKQSETRRLNNRNYMFTLNDTYPGAFAGKTGWTEEAGHTLVTLAERDGV 277

Query: 262 PIVAVVMGMPT-SQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKR 320
            ++ +VM        +   +  ++    +  T       R +  +        M ++++ 
Sbjct: 278 TLICIVMHSDGVVDAQYIDSTAILDYGFDNYTRAVVSKDRVEPKTMLLTGSEGMQQEVRL 337

Query: 321 TYSQFKKI 328
           T ++   +
Sbjct: 338 TRTEDMPV 345


>gi|240850634|ref|YP_002972034.1| penicillin-binding protein [Bartonella grahamii as4aup]
 gi|240267757|gb|ACS51345.1| penicillin-binding protein [Bartonella grahamii as4aup]
          Length = 387

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 138/289 (47%), Gaps = 12/289 (4%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +++D +   +   KQ D P +PASL K+MT+ ++F +L+   L    +  VS+ A  +  
Sbjct: 34  LLLDDDTGTILYEKQSDIPFFPASLAKLMTVEVVFHHLKEGLLKSTQKFKVSENAWRKGG 93

Query: 116 -----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                + ++ K KT  +    +  LI  + ND +    E ISG E  FA LM+ +AK +G
Sbjct: 94  APSGTTTMFAKIKTEISVSDLLRGLIIMNGNDAAIILAEGISGHEAHFAKLMNQRAKIVG 153

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           +  + + NA+GL ++ Q  T RD  IL   + + +P YY  +    F + N    N N L
Sbjct: 154 LSQSHFVNATGLPEEGQFVTVRDMIILARHIVQEYPDYYALYREPHFTWNNIFQRNKNPL 213

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF--- 287
           ++K   ++G   GY+   GF++V ++      +   + G+   ++  ++   ++      
Sbjct: 214 ISKEIGVEGFGFGYSGKEGFSMVATISKNHRRLFLAINGLQDGKKYTKEIERILQWGMTA 273

Query: 288 LEKKTL--KHQQTHRKDNLSSTSLKKSLMIKK-LKRTYSQFKKIDAKAH 333
            + KT+  K +   R      T     L++KK +    S  KK++ KA 
Sbjct: 274 FDLKTIFTKEEAVGRASVYGGTQNFVPLIVKKPISFMLSNEKKVNVKAK 322


>gi|327193414|gb|EGE60313.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli
           CNPAF512]
          Length = 360

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 67/237 (28%), Positives = 122/237 (51%), Gaps = 6/237 (2%)

Query: 58  VIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           +I+ +   +   K  D+   PASL K+MT+ ++FE +   ++ L+T+ PVS+ A     +
Sbjct: 1   MIEASTGTVLLAKNEDQGFSPASLAKLMTMDLVFEAVTKGQITLDTEYPVSEYAWRTGGA 60

Query: 117 -----KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                 ++   K+    E  I  +  + AND      E ++GSE++FA  M+ +A++IGM
Sbjct: 61  PSRTATMFAALKSRVRVEDLIKGIAIQGANDSCIILAEGMAGSEQQFAESMTRRAREIGM 120

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
              ++ N++GL D     TAR+   L   L++++P  Y YF+   F +      N N LL
Sbjct: 121 DKAVFGNSTGLPDGKSKVTAREMVTLAAALQQSYPNLYPYFAQPDFEWNRIFQRNRNPLL 180

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
                 DG+ TG+T   G++IV S++     +   + G+ + +ER ++A  ++   L
Sbjct: 181 GLDLGADGLATGFTEGEGYSIVASVQRDGRRLFLALAGIASDKERTEEAKRVLEWGL 237


>gi|218463771|ref|ZP_03503862.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli Kim 5]
          Length = 385

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 124/239 (51%), Gaps = 6/239 (2%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + +I+ +   +   K  D+   PASL K+MT+ ++F+ +   ++ L+T+ PVS+ A    
Sbjct: 24  AYMIEASTGTVLLAKNEDQGFSPASLAKLMTMNLVFDAVTKGQITLDTEYPVSEYAWRTG 83

Query: 115 PS-----KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            +      ++   K+    E  I  +  + AND      E ++GSE++FA  M+ +A++I
Sbjct: 84  GAPSRTATMFAALKSRVRVEDLIKGVAIQGANDSCIILAEGMAGSEQQFAESMTRRAREI 143

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           GM   ++ N++GL D     TAR+   L   L++++P  Y YF++  F +      N N 
Sbjct: 144 GMDKAVFGNSTGLPDGKSKVTAREMVTLAAALQQSYPNLYPYFALPDFEWNKIFQRNRNP 203

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           LL      DG+ TG+T   G++IV S++     +   + G+ + +ER ++A  ++   L
Sbjct: 204 LLGLDLGADGLATGFTEGEGYSIVASVQRDGRRLFLALAGIASDKERTEEAKRVLEWGL 262


>gi|311030756|ref|ZP_07708846.1| D-alanyl-D-alanine carboxypeptidase [Bacillus sp. m3-13]
          Length = 384

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 74/320 (23%), Positives = 144/320 (45%), Gaps = 19/320 (5%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMT 85
           +I L+  ++F   I  ++ +E       ++++I+    ++   K     +  AS+TK+MT
Sbjct: 9   SIALVSLLIFSICIPHNVHAEQVGVSARNAVLIEQESGRIIYEKDAHDKQRIASITKVMT 68

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
             +  E  +     L+  + VS+ A     S LYLK       E  +  L+ RS ND + 
Sbjct: 69  AILAIESGK-----LDEIVKVSEKAVRAEGSSLYLKPGEKIKLEHLVYGLMLRSGNDSAV 123

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLRKN 204
           A  E + GS + F  +M+ KA ++GM NT + N  GL D +N  ++A D A+L     +N
Sbjct: 124 AIAEHVGGSLEGFVFMMNEKAAELGMTNTEFANPHGLDDHENHYSSAYDMALLTRYAMEN 183

Query: 205 FPQYYKYFSIRKFRYR-------NRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSL 256
             ++ +    + +R         +R  TN ++L+        G KTGYT+ +   ++T+ 
Sbjct: 184 -DKFKEVAGTKVYRAPAAPGESWDRSWTNKHRLVTGMYQYATGGKTGYTKRAKRTLITTA 242

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIK 316
             +   ++AV +  P   +          +F++ K     +    DN+     K  + + 
Sbjct: 243 SKEGLDVIAVTLNGPDDWKDHIYMFN--RAFVDYKLYDIAEKGELDNVKDDFYKGKVSLS 300

Query: 317 K-LKRTYSQFKKIDAKAHST 335
           + +K   +Q ++ + +   T
Sbjct: 301 RDIKFPMTQKERENVRIKVT 320


>gi|262375440|ref|ZP_06068673.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter lwoffii SH145]
 gi|262309694|gb|EEY90824.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter lwoffii SH145]
          Length = 437

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 77/274 (28%), Positives = 131/274 (47%), Gaps = 14/274 (5%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQ-DEPRYPASL 80
           + I  +  +  L I   S A+ L+  P      +  ++D    Q+      D  R PASL
Sbjct: 2   KYIISLIAVFSLFISAFSHAALLNIVPESVEAEAWTILDSQSGQVIAEHNADVQRAPASL 61

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGILALITR 138
           TKMM  YI  + +++ KL  N  +  +    T   + S++YLKE    + +Q +  LI  
Sbjct: 62  TKMMVAYIALKEIEAGKLDKNEVLTATSVVKTVMWDESQMYLKEGDLISVDQLLAGLIIM 121

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           SAND +    E ISG   +F   M+ +AK +GMQ+T ++N +G+      +TA D A L 
Sbjct: 122 SANDAAVTLAEKISGGIPQFVERMNQEAKALGMQHTNFQNPAGITMPEHYSTAADLARLS 181

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
           + +    P Y  Y     F Y        N++L     +DG+KTG+TR +G+N+  +   
Sbjct: 182 MAVVNETPDYLYYSKQPSFTYNQHFHRATNRVLQVDPTVDGLKTGFTRAAGYNLALTANR 241

Query: 259 -------KDDPIVAVVMGMPTSQERDQKALELIT 285
                   +  ++ VV+G  ++ +R + + +L+ 
Sbjct: 242 VTADFEMPNRRLIVVVLGTNSAAKRAEVSHKLMN 275


>gi|134298517|ref|YP_001112013.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
           MI-1]
 gi|134051217|gb|ABO49188.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
           MI-1]
          Length = 410

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 119/268 (44%), Gaps = 19/268 (7%)

Query: 56  SIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++++D     +   K++  R YPAS TK++T  +  E+ +     +  ++ +    +   
Sbjct: 33  AVLLDAKSGAVLYGKEEHKRMYPASTTKVLTALVALEHAR-----MTDRVTIGPNPSKAG 87

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            + ++L+E      ++ + AL+  SAND   A  E ++GS  KFA + + +A+++G  NT
Sbjct: 88  GTSIWLQEGEQLAMQELLYALMLNSANDAGVAIAEHVAGSVGKFAAMSNERARELGANNT 147

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI------RKFRYRNRIITNHN 228
            + N  G+ +K+  +TA D A++G    KN     K  +       R      + + NHN
Sbjct: 148 HFVNPHGMPNKDHYSTAYDLALIGQAALKN-KDLRKILTTIHHEIPRADPEAQKYLFNHN 206

Query: 229 KLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           KLL           G+KTGYT  +G  I+ S       ++AVV+           A +L+
Sbjct: 207 KLLWSKTYGYKGATGLKTGYTVEAGQCIIASAERNGMELIAVVLRSEGFNL-WTDAAKLL 265

Query: 285 TSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
                  T   Q       ++   +K  
Sbjct: 266 DYGFANFT-NRQLVQGGKIMADVPVKYG 292


>gi|326791358|ref|YP_004309179.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
           DSM 5427]
 gi|326542122|gb|ADZ83981.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
           DSM 5427]
          Length = 382

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 73/307 (23%), Positives = 140/307 (45%), Gaps = 24/307 (7%)

Query: 24  IQRNIQLMGKILFLSIIMISMA---SELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPAS 79
           +++ I ++  IL  S+++ S+    SEL       +++I+    ++   K   EP   AS
Sbjct: 1   MKKKI-ILSFILIGSMLVSSLCYANSELPKVRAKGAVLIEQESGRVLYEKNGYEPLAMAS 59

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
            TK+MT  +  E     K +L   + +SK A++  P KL+LK          + AL+ +S
Sbjct: 60  TTKIMTCILAIE-----KGNLLDVVTISKRASSAPPVKLHLKVGEKQRLGDLLYALMLQS 114

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND + A  E I+GS + F   M+ KAK+IG ++T +K  +GL  +    +A D  ++G 
Sbjct: 115 DNDAAVAVAEHIAGSVEAFCEQMTEKAKEIGAEHTSFKTPNGLDAEGHYASAYDMTLIGA 174

Query: 200 LLRKNFPQYYKYFSIRKFRYRNR--------IITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
              KN P++ K  +    +             + N N+        +GIKTG+T  +G  
Sbjct: 175 YALKN-PEFVKIITTATIQIPTIPTEGSHTYGLQNKNRFFYSYEGANGIKTGFTNKAGHC 233

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQE----RDQKALELITSFLEKKTLKHQQTHRKDNLSST 307
            V +    D  ++   +G    +     +    + ++    +    K+     + N++  
Sbjct: 234 FVGAAYKNDMQLIGAALGSGWGKAGKTQKYTDVINMMNYGFKYYK-KYTLVEPQRNIAKV 292

Query: 308 SLKKSLM 314
           +++K+L+
Sbjct: 293 AIEKALI 299


>gi|225420336|ref|ZP_03762639.1| hypothetical protein CLOSTASPAR_06680 [Clostridium asparagiforme
           DSM 15981]
 gi|225041022|gb|EEG51268.1| hypothetical protein CLOSTASPAR_06680 [Clostridium asparagiforme
           DSM 15981]
          Length = 595

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 81/294 (27%), Positives = 130/294 (44%), Gaps = 35/294 (11%)

Query: 29  QLMGKILFLSIIMISM-ASELHAKP------KYSSIVIDVNKNQMTGFKQ-DEPRYPASL 80
           +L    L  ++  + M A    A P          IV++     +   K  D+P YPAS+
Sbjct: 3   RLFALCLAFALCAVPMTAWAAPAWPSGVTIQADGGIVMEAGTGTVLYGKNMDQPYYPASI 62

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGILALIT 137
           TK++T  I+ E        L+  +  S  A      + S   + E    T    + AL+ 
Sbjct: 63  TKILTALIVIESCD-----LDEIVTFSHDAVYNVEADSSSAGIDEGDQLTVRDCLYALLL 117

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            SAN+ + A  E +SG+ + FA LM+ +A  +G   + + N SGL+D+N  TTA D A +
Sbjct: 118 ASANESANALAEHVSGTREAFADLMNQRAASLGCTGSHFANPSGLNDENHYTTAHDMAKI 177

Query: 198 GILLRKNFPQYYKYFSIRKFRYRN------------RIITNHNKLLNK-----MHNIDGI 240
                +N P + +    R +R  N              I NH+K+ N+      +     
Sbjct: 178 AQAAIQN-PTFVEICGSRTYRLPNMKRAPAEKFPDGYPIANHHKMWNRNDAAYYNGAFCG 236

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
           KTGYT  +G  +VT  +  D  ++AVV+    +   D KA+ L   F   ++LK
Sbjct: 237 KTGYTSLAGNTLVTCAKRGDMTLIAVVLNGHLTHYTDTKAM-LDFGFGNFQSLK 289


>gi|294496884|ref|YP_003560584.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium QM B1551]
 gi|295702251|ref|YP_003595326.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium DSM 319]
 gi|294346821|gb|ADE67150.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium QM B1551]
 gi|294799910|gb|ADF36976.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium DSM 319]
          Length = 451

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/312 (24%), Positives = 136/312 (43%), Gaps = 43/312 (13%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKY--------SSIVIDVNKNQMTGFKQ-DEPR 75
           ++ I ++  +L  S+  +S  ++  A PK         ++I+++ +  ++   K  D   
Sbjct: 7   KQLICVIAVMLMASVFFVS--TQASAAPKTDDIGVEADAAILVEASTGKVLYGKNTDALL 64

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQG 131
             AS+TKMMT Y++ E ++ KKL  + ++PVSK AA        S + L E   +T ++ 
Sbjct: 65  GIASMTKMMTEYLVLESIKDKKLSWDQRVPVSKYAAKISQDYGLSNVPLIENQKYTVKEL 124

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------- 184
             A+   SAN  + A  E +SGSE+ F  LM+  AK++ M  + + N++GL +       
Sbjct: 125 YDAMAIYSANGAAIALAEAVSGSEENFIKLMNETAKRLNMGESKFVNSTGLSNSLLKGMY 184

Query: 185 -------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NRIITNHNKLLN 232
                     + +AR  A L   L  ++P+  +        +R        + N NK+L 
Sbjct: 185 PKGTKEEDENLLSARAVATLAYHLIHDYPESLEVAKTPSKMFRQGQQGETKMNNWNKMLP 244

Query: 233 K----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP-----TSQERDQKALEL 283
                   +DG+KTG+T  +G     +        + VVM        T   R  +  ++
Sbjct: 245 GFSAAYSGVDGLKTGHTDFAGQCFTGTAERNGVRYITVVMNAKENGKSTEAARFSQTKKI 304

Query: 284 ITSFLEKKTLKH 295
           +        LK 
Sbjct: 305 LDYAFSHFQLKE 316


>gi|229079541|ref|ZP_04212079.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock4-2]
 gi|228703766|gb|EEL56214.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock4-2]
          Length = 416

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 139/306 (45%), Gaps = 30/306 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             S+I+I+ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + ++ +S+ A 
Sbjct: 20  AGSAILIEENSGKILYEKNADESLAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAH 79

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                ++ S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K
Sbjct: 80  KISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALVEQIAGKEVNFVKMMNDKSK 139

Query: 168 KIGMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFS 213
           + GM++  + N++GL +++                 +ARD AIL   L ++FPQ      
Sbjct: 140 EFGMKDYKFVNSTGLTNQDLKGYHLEGTTLEEKNKMSARDCAILAQRLIQDFPQILNTAK 199

Query: 214 IRKFRYRN-----RIITNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           I K  ++        + N N +L     +   +DG+KTG T  +G     ++      ++
Sbjct: 200 IPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLI 259

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
           +VV+   +   R  +  +L         +K+   + KD++        +   K K    Q
Sbjct: 260 SVVIKAKSHTARFDETKKLYDYGFANFEVKN--VYGKDSVIKGHETVRVANAKDKDVVVQ 317

Query: 325 FKKIDA 330
            K+  +
Sbjct: 318 TKQAVS 323


>gi|260888386|ref|ZP_05899649.1| serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena
           ATCC 35185]
 gi|260861922|gb|EEX76422.1| serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena
           ATCC 35185]
          Length = 354

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 110/242 (45%), Gaps = 16/242 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++I+++    ++   K  + R YPAS+TKMMT  +    ++S +  L   + ++  AA  
Sbjct: 109 AAILMNARTGEVLYEKNGDKREYPASMTKMMTCIL---SVESGRADL--AVTITPFAADV 163

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +++  +             ++  S N  + A  E + GSE +FA +M+ KA++IG  +
Sbjct: 164 ETTRV--RPGEQARLRDLTRQMMLISDNGAALAIAETLGGSEAQFAAMMNRKAREIGAFH 221

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-------RNRIITN 226
           T + N +G+ D N  +TA D A++     +N P++ K    +                 N
Sbjct: 222 THFVNPNGMPDANHYSTAHDIALIAAYGLRN-PEFRKIVGTKASTIYYLQPAGYKTYCEN 280

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            N LL       G+KTG+TR +G  +  S    D  ++AVVM       R  +A  L+  
Sbjct: 281 TNALLYSYPGCTGLKTGWTRAAGGCLAASAVRGDTELIAVVMHSDDEDTRASEAAALLDY 340

Query: 287 FL 288
             
Sbjct: 341 GF 342


>gi|114704618|ref|ZP_01437526.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein
           [Fulvimarina pelagi HTCC2506]
 gi|114539403|gb|EAU42523.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein
           [Fulvimarina pelagi HTCC2506]
          Length = 396

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 72/284 (25%), Positives = 135/284 (47%), Gaps = 16/284 (5%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYS-------SIVIDVNKNQMTGFKQD-E 73
           + I R +     IL L+   ++ A E  A   Y        +++++     +   K   E
Sbjct: 1   MNIARPLLAAFAILSLT-SHVTQAQEGAAANAYGLQTEAPRALLVEDRTGTVILDKNASE 59

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS-----KLYLKEKTYFTT 128
           P  PASL K+MT+ I+FE L++ ++ ++T+  V++ A     +      ++    +    
Sbjct: 60  PFAPASLAKLMTMEIVFEALKAGEISMSTEYAVTEHAWRTGGAPSGAATMFAAINSRIPV 119

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-- 186
              I   I + AND +    E + GSE++F   M+ +A+++G+ +T Y N +GL  +   
Sbjct: 120 ADLIRGTIIQGANDGAIILAEGMFGSEEEFTERMNARAEELGLDDTRYANPTGLPTEEGE 179

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           Q TTARD   L   LR   P+ YK ++   F +      N N +L +    +G+ TGYT 
Sbjct: 180 QQTTARDLVTLTRHLRSEHPELYKIYAEPAFEWNKIFQRNRNPVLREELGGEGVGTGYTE 239

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            SG++++ +        +  + G+ +S  R+ +A  L+    ++
Sbjct: 240 ASGYSLMGAASKGGRTFLVALSGLESSAAREAEAQRLLEFGFDR 283


>gi|256828650|ref|YP_003157378.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577826|gb|ACU88962.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 401

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 6/256 (2%)

Query: 59  IDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           I+++   +      D+   PAS+TK++TLYII E L   +L   T IPVS  A     S+
Sbjct: 148 INMSTGDVYYEHNPDKTIAPASITKLLTLYIIREALAQGRLSQATPIPVSAEAVKTGGSR 207

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIY 176
           + LK        + I  +   SAN+   A  E+   G   KF   M+ KAKKIGM N+ +
Sbjct: 208 MRLKRNEKVPLGELIKGISVVSANNACVAVAEYFGKGDPSKFVAQMNEKAKKIGMVNSRF 267

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN 236
           KN +GL    Q++TARD A L +   + FP+  K  S+    +      N N LL     
Sbjct: 268 KNPNGLPASGQLSTARDIAKLSVAYLRTFPESLKVHSMTSHTFHGATHRNANTLLRTYKG 327

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQ 296
           +DG+KTG+  ++G+NI  + +     +VAVV+G   S  R ++   L+         +  
Sbjct: 328 VDGLKTGFVCDAGYNITATAKRGKTRLVAVVLGAQNSAVRQRETARLLDYGFR----RAA 383

Query: 297 QTHRKDNLSSTSLKKS 312
              +  N +S + KK 
Sbjct: 384 DEEKLANKTSAAAKKP 399


>gi|229170862|ref|ZP_04298467.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus MM3]
 gi|228612597|gb|EEK69814.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus MM3]
          Length = 417

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 73/315 (23%), Positives = 140/315 (44%), Gaps = 41/315 (13%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A 
Sbjct: 20  AGAAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAY 79

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                 + S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K
Sbjct: 80  KVSQDASLSNVALENGGIYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSK 139

Query: 168 KIGMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           ++G++N  + N++GL               D+    +A+D A L   L K++P+      
Sbjct: 140 ELGLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAK 199

Query: 214 IRKFRYR----NRIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           I K  +R       ++N N +L         +DG+KTG T  +G     ++       ++
Sbjct: 200 IPKKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFIS 259

Query: 266 VVMGMPTSQERDQKALELITSFLEK----------KTLKHQQTHRKDNLSSTSL----KK 311
           VV+   +   R  +  +L                  ++K Q+T R +N     +    K+
Sbjct: 260 VVIKTSSHTARFDETKKLYDYGFANFEMKQMYKKDSSVKGQETVRVENAKDKDVAVQTKQ 319

Query: 312 SLMIKKLKRTYSQFK 326
           ++ +   K +   +K
Sbjct: 320 AVSLPVPKGSKDVYK 334


>gi|153810801|ref|ZP_01963469.1| hypothetical protein RUMOBE_01185 [Ruminococcus obeum ATCC 29174]
 gi|149833197|gb|EDM88279.1| hypothetical protein RUMOBE_01185 [Ruminococcus obeum ATCC 29174]
          Length = 393

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 65/276 (23%), Positives = 124/276 (44%), Gaps = 22/276 (7%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++++D +  ++   K  + PR  AS TK+MT  +  E  +      +  + VS  A 
Sbjct: 35  ALSAVLMDGDSGRVLYQKSGNTPRPNASTTKVMTCILALENGKG-----DDYVKVSANAV 89

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +Q   +L L     +  E  + +L+ +S ND + A  E I GS   F+ +M+ KAK+IG 
Sbjct: 90  SQPEVRLGLSIGEQYYLEDLLYSLMLQSHNDSAVAIAECIGGSVDNFSAMMNAKAKEIGC 149

Query: 172 QNTIYKNASGLHDKN----QITTARDQAILGILLRKNFPQYYKYFSIRKFRY------RN 221
           +NT +   +GL  +N      TTA D A++      N   + K     ++ +      R+
Sbjct: 150 KNTHFVTPNGLDAENSGGTHHTTAEDLALIMRYAIHN-DVFLKITQTEEYSFSDLSKKRH 208

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM---PTSQERDQ 278
             + N N LL+    +   KTGYT ++G+  V + +  +   +  ++G         +  
Sbjct: 209 FSVHNTNALLHMTDGVLAGKTGYTGDAGYCYVCACQKDNKTFIIALLGAGWPDHKNYKWH 268

Query: 279 KALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLM 314
             LEL+         +++   ++  LS   ++  ++
Sbjct: 269 DTLELLNYG--NSNYEYRSFWQEPELSYIPVENGIL 302


>gi|308071619|ref|YP_003873224.1| D-alanyl-D-alanine carboxypeptidase [Paenibacillus polymyxa E681]
 gi|305860898|gb|ADM72686.1| D-alanyl-D-alanine carboxypeptidase [Paenibacillus polymyxa E681]
          Length = 313

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 131/289 (45%), Gaps = 25/289 (8%)

Query: 29  QLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMM 84
            ++  +L + I +      L  KP     +++++D++  ++      D P   A+++K+M
Sbjct: 10  AIVVPVLIILIFITLGPRLLIGKPNVDAEAAVLMDMHTGELLMDVNGDTPMPSANMSKLM 69

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T  ++ E +++ +L  N ++ +S+ A+T     L L+     T  +   +++  SAND +
Sbjct: 70  TELLVLEDIRAGRLGWNDEVRISRYASTVGGVNLSLRYGERMTVSELFQSMVVYSANDAA 129

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGM-QNTIYKNASGLHD----KNQ--------ITTA 191
            A  E  +G+E  F   M+ KA +IG+  ++ + NASG        N           TA
Sbjct: 130 VALAERSAGNESAFVKRMNGKAAQIGLSSDSRFSNASGAGQSELGPNHPEDIQGETKMTA 189

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKF--RYRNRIITNHNKLL------NKMHNIDGIKTG 243
            D A L   L  + P+  +  S  +   + +   I+N N +L            DG+K G
Sbjct: 190 SDTAKLASYLITSHPEILRTSSRTQMELKDKGIYISNTNWMLPSLAGPYSYAGTDGLKAG 249

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           YT ++G+    +       +VAVV+G P+ +ER ++   L        T
Sbjct: 250 YTSDAGYCFTGTAEQHGRRLVAVVLGAPSKEERFEQTRRLFDYGFSLST 298


>gi|190891838|ref|YP_001978380.1| D-alanyl-D-alanine carboxypeptidase [Rhizobium etli CIAT 652]
 gi|190697117|gb|ACE91202.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CIAT
           652]
          Length = 360

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 67/237 (28%), Positives = 122/237 (51%), Gaps = 6/237 (2%)

Query: 58  VIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           +I+ +   +   K  DE   PASL K+MT+ ++FE +   ++ L+T+ PVS+ A     +
Sbjct: 1   MIEASTGTVLLAKNEDEGFSPASLAKLMTMDLVFEAVTKGQITLDTEYPVSEYAWRTGGA 60

Query: 117 -----KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                 ++   K+    E  I  +  + AND      E ++GSE++FA  M+ +A++IGM
Sbjct: 61  PSRTATMFAALKSRVRVEDLIKGIAIQGANDSCIILAEGMAGSEQQFAESMTRRAREIGM 120

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +  ++ N++GL       TAR+   L   L++++P  Y YF+   F +      N N LL
Sbjct: 121 EKAVFGNSTGLPGGKSKVTAREMVTLAAALQQSYPNLYPYFAQPDFEWNRIFQRNRNPLL 180

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
                 DG+ TG+T   G++IV S++     +   + G+ + +ER ++A  ++   L
Sbjct: 181 GLDLGADGLATGFTEGEGYSIVASVQRDGRRLFLALAGIASDKERTEEAKRVLEWGL 237


>gi|205373775|ref|ZP_03226577.1| D-alanyl-D-alanine carboxypeptidase [Bacillus coahuilensis m4-4]
          Length = 318

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 79/311 (25%), Positives = 135/311 (43%), Gaps = 23/311 (7%)

Query: 30  LMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMT 85
           L+   L  S+    +  ++ A P    +S+I++D    ++   K  E +   AS+TK+MT
Sbjct: 10  LLTVFLLGSVCFRPL--DVQAAPGVSAHSAILMDQETGRVLYEKNAEQQMKIASITKIMT 67

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
             +  E        L   + VS  AA    S LYL        E  +  L+ RS ND + 
Sbjct: 68  AIVAIES-----DDLQDTVTVSSNAAGTEGSSLYLVAGQKMKLEDLLYGLMLRSGNDSAV 122

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-QITTARDQAILGILLRKN 204
           A  E + GS + F  LM+ KA++IGM+NT + N  GL D +  ++T+ D A+L      N
Sbjct: 123 AIAEHVGGSLEGFVYLMNQKAEEIGMENTNFDNPHGLDDSDTHLSTSYDMALLMKYSMNN 182

Query: 205 FPQYYKYFSIRKFRYRN------RIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLR 257
              + +  S    +  N          N N+LL +      G KTGYT+ +   +VT+  
Sbjct: 183 -ETFQEISSTEVHKAPNPNGDWDYSWHNKNRLLTQLYEYCTGGKTGYTKLAKRTLVTTAE 241

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIK- 316
              + ++AV +  P          E      +   L  + +  +  +  +  K  + IK 
Sbjct: 242 KDGEKLIAVTLNGPDDWNDHISMYEYGFDQFDYYVLAKKGSLSE--IKDSYYKGKVYIKH 299

Query: 317 KLKRTYSQFKK 327
           ++K +  + +K
Sbjct: 300 EIKYSIKELEK 310


>gi|116874117|ref|YP_850898.1| D-alanyl-D-alanine carboxypeptidase [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116742995|emb|CAK22119.1| D-alanyl-D-alanine carboxypeptidase [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 445

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 80/356 (22%), Positives = 153/356 (42%), Gaps = 39/356 (10%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISM-ASELHAKP---KYSSIVIDVNKNQMTGFKQDEP 74
              I  +  I +M   L +S  ++S  A++  A+P     ++I I+ +  ++   K  + 
Sbjct: 1   MKKIIKKTGIAIMAVSLAVSGFLVSPKAAQAAAEPTVNANAAIAIEESTGKILYSKDADK 60

Query: 75  RY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTE 129
               AS+TKMM  Y++ E +   K+  + ++ +S+ A      ++ S + L+    +T +
Sbjct: 61  LMGIASMTKMMDEYLLLEAINDGKIKWDDKVTISEYAYKVSQDRSLSNVPLRLGEEYTVQ 120

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--- 186
           +   A+   SAN  + A  E ++GSEK F  LM+ KA+K+ +    + N++GL++++   
Sbjct: 121 ELYEAMAIYSANGAAIAIAEKVAGSEKAFVDLMNKKAEKLKLGEHQFVNSTGLNNEDLKG 180

Query: 187 ----------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL 231
                        TAR  A L   L K++P+  K  S  K  +R        +TN N LL
Sbjct: 181 GQQVGGPKDENKMTARGMAKLAKHLIKDYPEVLKTASTTKKEFRKGTSDQIDMTNWNWLL 240

Query: 232 NKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM------PTSQERDQKAL 281
             +      +DG+KTG T  +G  +  +       ++ VV+          +  R  +  
Sbjct: 241 PGLIYGRKGVDGLKTGTTDYAGMCLTATAVEDGMRVITVVLHANGGGAGEHTSARFDETN 300

Query: 282 ELITSFLEKKTLKHQQT--HRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           +++        +K  Q    +  + SS ++ K         T    K +  K  + 
Sbjct: 301 KMLDYSFNNFKVKEVQKAGSKVKDPSSIAVDKGKEDTVGLVTKDAVKLVVPKNDNA 356


>gi|330839897|ref|YP_004414477.1| Serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena
           ATCC 35185]
 gi|329747661|gb|AEC01018.1| Serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena
           ATCC 35185]
          Length = 376

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 77/271 (28%), Positives = 129/271 (47%), Gaps = 18/271 (6%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           + A+E       S+I+I+ +  ++   K  D PR+PAS TKMMT  +  E        L+
Sbjct: 21  AGAAENIQITAASAILIEASTGRVLYEKAADVPRFPASTTKMMTCVLAIEEGD-----LS 75

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
           + + VS+TAA    +++       F   + +  ++ RS N  S A  E ++GS   FA  
Sbjct: 76  SILTVSRTAAETEDTEVG--AGDRFVLAELVAEMMLRSDNGASVAIAEDLAGSVGSFAAH 133

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           M+ KAK IG ++T + N +GL D   ++TA D A +     KN P++  +   ++     
Sbjct: 134 MNEKAKAIGAKDTHFLNPNGLPDPAHVSTAHDIARIAAYGMKN-PKFRSFVGTKEREITW 192

Query: 222 RI-------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                    + N N+LL+      GIKTGYT  +G  +  S R     ++AVV+G    +
Sbjct: 193 VTPEKKRARMANTNRLLSTYEGATGIKTGYTNAAGGCLAASARRGGVELIAVVLGAADEE 252

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLS 305
            R   A +L+     +  +K    + K +L+
Sbjct: 253 ARFSDAAKLLDMGFRR--VKAAPAYTKTDLA 281


>gi|68171447|ref|ZP_00544835.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|88657866|ref|YP_507852.1| D-alanyl-D-alanine carboxypeptidase family protein [Ehrlichia
           chaffeensis str. Arkansas]
 gi|67999128|gb|EAM85790.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|88599323|gb|ABD44792.1| D-alanyl-D-alanine carboxypeptidase family protein [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 381

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 84/327 (25%), Positives = 155/327 (47%), Gaps = 17/327 (5%)

Query: 24  IQRNIQLMGKILFLSI---IMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           + R+I L+    F+SI   I  ++A  +      ++ V D   N M      DE   P+S
Sbjct: 1   MLRHIILLLLYCFISIQVHISNAVALPIQTTAPQAA-VFDFFSNTMLLEHNIDEQIAPSS 59

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +T +MTLY+ F Y+++  + +  +   SK A  +  + ++L+          I  +IT S
Sbjct: 60  MTNLMTLYVTFYYIKAGFVKMEDKFKTSKEAWQKGGNSIFLRAGQLVAVRDLINGIITTS 119

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AND      E ++GS++ F   M+  A+K+ +  + + N  G  DKNQ  + RD   L +
Sbjct: 120 ANDACITLAEGVAGSQENFVDEMNRIAQKLNLTKSHFSNVIGAQDKNQFMSIRDLITLTV 179

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            + ++FP+YY  FS + F+Y N    N N LL+  + IDGI + YT   G+  + + +++
Sbjct: 180 RIFEDFPEYYHLFSKKDFKYNNIYQENIN-LLSPDNRIDGIISIYTDAGGYGSIVAAKHE 238

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLE---KKTLKHQQTHRKDNLSSTSLKK----- 311
              I  ++ G+ T +ER  +  +L+         +T+ H+ +  K+ +      K     
Sbjct: 239 GRRIFILISGLKTEKERISEIKQLLDYAFNDFSSQTIFHKGSKAKEIIVKNGDAKYVEAV 298

Query: 312 ---SLMIKKLKRTYSQFKKIDAKAHST 335
               ++I   K +Y   K   +  ++ 
Sbjct: 299 FNNDVIILYPKGSYDTVKTFFSHENAI 325


>gi|325661133|ref|ZP_08149760.1| hypothetical protein HMPREF0490_00493 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472640|gb|EGC75851.1| hypothetical protein HMPREF0490_00493 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 404

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 74/303 (24%), Positives = 129/303 (42%), Gaps = 24/303 (7%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           I ++  +L +S   +S   E+      S++++D +  ++   K   E +  AS TK+MT 
Sbjct: 8   IGILTGVLLVS-SPVSAKEEIEQLYAQSAVLMDADNGRVLFEKNGSEKKPMASTTKIMTC 66

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            +  E       +L   + VS+ AA Q    L ++    F     + +L+  S ND + A
Sbjct: 67  ILALEEG-----NLTDVVNVSENAARQPKVHLGMQMDEKFYLRDLLYSLMLESHNDSAVA 121

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN----QITTARDQAILGILLR 202
             E I GS + FA  M+ KAK+IG ++T +   +GL   +      TTA D A +     
Sbjct: 122 IAEHIGGSVQAFADKMNAKAKEIGCRDTYFITPNGLDASDDKGEHSTTAEDLARIMSYCI 181

Query: 203 KNFPQYYKYFSIR---KFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
              P+   + SI     + +      R+    NHN  L  M      KTG+T  +G+  V
Sbjct: 182 LKSPKKESFLSITQKGSYHFMDVDCHRSFSCQNHNAFLTMMDGALSGKTGFTGKAGYCYV 241

Query: 254 TSLRYKDDPIVAVVMGM---PTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLK 310
            +L  +    V  ++G         +      L+T  +E   L+ +    K+ L   ++K
Sbjct: 242 GALESRGRTFVVALLGCGWPNNKGYKWADTRRLMTYGMENYELR-EAFSGKEPLRDVTVK 300

Query: 311 KSL 313
             +
Sbjct: 301 AGI 303


>gi|308270080|emb|CBX26692.1| hypothetical protein N47_A07210 [uncultured Desulfobacterium sp.]
          Length = 370

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 83/283 (29%), Positives = 130/283 (45%), Gaps = 18/283 (6%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A    +++ +DV   ++   K  + + +PAS TK+MT  +  E      L     + VSK
Sbjct: 59  ATYTRAAVAMDVTTGKILYAKNPDLKCFPASTTKLMTAIVSIENADLNNL-----VTVSK 113

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
           TA+  +P K   K     T E+ + A +  SAND + A  E +SGS   F  LM+ KA  
Sbjct: 114 TASNVSPHKAGFKAGDKVTVEKLLYAALVGSANDAAVALAEGVSGSVDGFVELMNKKAVA 173

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR-----KFRYRNRI 223
           IG  NT + N +GL    Q  TA D + +     + +P+  +    R             
Sbjct: 174 IGASNTRFINPNGLPGPGQYITASDLSKILQYALR-YPKLREIIGTRFAEITTLDGMPIH 232

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           + N NKLL     + G KTGYTR +G   V +   ++D I+  ++G P+ ++  +++  L
Sbjct: 233 LKNTNKLLWSDEEVIGGKTGYTRRAGHCFVGAAERENDKIIIALLGSPSRKDLWKQSETL 292

Query: 284 ITSFLEKKTLKHQQ----THRKDNLSSTSLKKSLMI--KKLKR 320
           I    E K    +     T  K  L+ TS K    I  KK+K+
Sbjct: 293 IAKGFEIKENSEEPLVYCTQTKPLLAKTSYKNRTTIRNKKIKK 335


>gi|85374069|ref|YP_458131.1| D-alanyl-D-alanine carboxypeptidase [Erythrobacter litoralis
           HTCC2594]
 gi|84787152|gb|ABC63334.1| D-alanyl-D-alanine carboxypeptidase [Erythrobacter litoralis
           HTCC2594]
          Length = 347

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 110/238 (46%), Gaps = 6/238 (2%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-- 113
           +++D+   Q    +  + R+ PAS+TK+MT Y  FE ++  KL   T+   S+ AA +  
Sbjct: 1   MLVDMASGQTLYARNPDRRFVPASITKVMTAYTAFELMKQGKLAPGTRFTFSEAAADEWY 60

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S ++L   +       ++ + T SAND S    E  +GS   +  LM+  A  +GM 
Sbjct: 61  RTGSTMFLDRGSETAVTDLLMGITTVSANDGSIVLAEGAAGSVDNWLDLMNAHADALGMH 120

Query: 173 NTIYKNASGLHDKN-QITTARDQAILGILLRKNFP-QYYKYFSIRKFRYRNRIITNHNKL 230
            + +   +G  D+    TTARD   L   L    P  Y +YF  R  R       N++ +
Sbjct: 121 QSHFGTPNGWPDEGRTFTTARDLVTLAKALITEHPGLYARYFGHRGLRTNGIAQDNYDPI 180

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
             ++   DGIKTG+T  +G+  + S       +V VV   P  + RD+ A  L+    
Sbjct: 181 TGRIEGADGIKTGFTNQAGWGFLGSAERDGRRLVMVVAASPGMRSRDETARALMEWGF 238


>gi|331085110|ref|ZP_08334196.1| hypothetical protein HMPREF0987_00499 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407893|gb|EGG87383.1| hypothetical protein HMPREF0987_00499 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 402

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 74/303 (24%), Positives = 129/303 (42%), Gaps = 24/303 (7%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           I ++  +L +S   +S   E+      S++++D +  ++   K   E +  AS TK+MT 
Sbjct: 6   IGILTGVLLVS-SPVSAKEEIEQLYAQSAVLMDADNGRVLFEKNGSEKKPMASTTKIMTC 64

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            +  E       +L   + VS+ AA Q    L ++    F     + +L+  S ND + A
Sbjct: 65  ILALEEG-----NLTDVVNVSENAARQPKVHLGMQMDEKFYLRDLLYSLMLESHNDSAVA 119

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN----QITTARDQAILGILLR 202
             E I GS + FA  M+ KAK+IG ++T +   +GL   +      TTA D A +     
Sbjct: 120 IAEHIGGSVQAFADKMNAKAKEIGCRDTYFITPNGLDASDDNGEHSTTAEDLARIMSYCI 179

Query: 203 KNFPQYYKYFSIR---KFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
              P+   + SI     + +      R+    NHN  L  M      KTG+T  +G+  V
Sbjct: 180 LKSPKKESFLSITQKGSYHFMDVDCHRSFSCQNHNAFLTMMDGALSGKTGFTGKAGYCYV 239

Query: 254 TSLRYKDDPIVAVVMGM---PTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLK 310
            +L  +    V  ++G         +      L+T  +E   L+ +    K+ L   ++K
Sbjct: 240 GALESRGRTFVVALLGCGWPNNKGYKWADTKRLMTYGMENYELR-EAFAGKEPLRDVTVK 298

Query: 311 KSL 313
             +
Sbjct: 299 AGI 301


>gi|228898767|ref|ZP_04063051.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis IBL 4222]
 gi|228860859|gb|EEN05235.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis IBL 4222]
          Length = 415

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 74/322 (22%), Positives = 138/322 (42%), Gaps = 40/322 (12%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             ++I+++ N  ++   K  DE    AS+TKMM+ Y++ E +   KL  + +I VS+ A 
Sbjct: 18  AGAAILVEANSGKIVYQKNADELLSIASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAY 77

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                 + S + L+    +T ++   A+   SAN  + A  E I+G E  F  +M++K+K
Sbjct: 78  KVSQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSK 137

Query: 168 KIGMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           ++G++N  + N++GL               D+    +A+D A L   L K++P+      
Sbjct: 138 ELGLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAK 197

Query: 214 IRKFRYR----NRIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           I K  +R       ++N N +L         +DG+KTG T  +G     ++       ++
Sbjct: 198 IPKKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFIS 257

Query: 266 VVMGMPTSQERDQKALELITSFLEK----------KTLKHQQTHRKDNLSSTSL---KKS 312
           VV+   +   R  +  +L                   +K Q+T R +N     +    K 
Sbjct: 258 VVIKTSSHTARFDETKKLYDYGFANFEVKQMYKKGSLVKGQETVRVENAKDKDVAVQTKQ 317

Query: 313 LMIKKLKRTYSQFKKIDAKAHS 334
            +   + +      K + K  S
Sbjct: 318 AISLPVPKGSKDVYKTELKESS 339


>gi|255505895|ref|ZP_05348727.3| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
           DSM 14469]
 gi|255265270|gb|EET58475.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
           DSM 14469]
          Length = 625

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 125/283 (44%), Gaps = 21/283 (7%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++I++D +   +   K  E + YPAS+TK+MT  I  E     K +L+  +  S+ A 
Sbjct: 74  AETAILMDADTGAILYAKSIEKQEYPASITKIMTTLIALE-----KGNLSDVVTFSENAV 128

Query: 112 ---TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                  S L L      T EQ +  ++  SAN++S A  E I G  + F  +M+ KA++
Sbjct: 129 YSIEYGSSHLGLTAGEELTLEQCLYGIMLASANEISNAVAEHIGGDIETFVGMMNEKAQE 188

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN------- 221
           +G  NT + N  GLHD+N    A+D A++     KN  ++ +     ++ +         
Sbjct: 189 LGCTNTHFVNVHGLHDENHYVCAKDMALIMQAALKN-EKFREIIGTVEYNFPETNLVDEV 247

Query: 222 RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           R   NH+K++++         G K GYT  +   +VT+       I++VV+  P      
Sbjct: 248 RYFINHHKMISEEGMLYDGCIGGKNGYTDEAWNTLVTAAERDGMTIISVVLRCPGQYVSY 307

Query: 278 QKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKR 320
                L+                  ++  T ++ +  ++K+K+
Sbjct: 308 DDTKVLLDYGFANFHDAQIANTNSADIEITGIEDAAELEKIKQ 350


>gi|255658320|ref|ZP_05403729.1| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM
           20544]
 gi|260849639|gb|EEX69646.1| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM
           20544]
          Length = 288

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 69/262 (26%), Positives = 117/262 (44%), Gaps = 19/262 (7%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSK 96
           S + ++ A ++ A    ++IVID    Q+   K  + R YPAS+TKMMT  +  E     
Sbjct: 22  SAVAMAAAPDITAD---AAIVIDEATGQVLYEKNADKREYPASMTKMMTCILALE----- 73

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           K   +  + VS  AA    ++LY            +  ++  S N  +TA GE + G E 
Sbjct: 74  KSSPDQLVTVSANAADVECTRLY--PGYTLRMADILQQMMMISDNGAATAVGEAVGGDEA 131

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            FA +M+ KA++IG  +T + N +G+ D +  +TARD   +      N   + +    + 
Sbjct: 132 SFAAMMNAKAQEIGATHTHFVNMNGMPDADHYSTARDMGKIAAYAMHN-DAFRRIVGTKA 190

Query: 217 FRY-------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
                           N N+LL+      GIKTG+T  +   +  + +     ++AVVM 
Sbjct: 191 KNIYYIVPQGHTTYCINTNELLDTYEGCTGIKTGWTSAARGCLSAAAKRDGKELIAVVMH 250

Query: 270 MPTSQERDQKALELITSFLEKK 291
               + R  +A  L+    E++
Sbjct: 251 SDDDETRFSEAAALLDYGFEQE 272


>gi|258590884|emb|CBE67179.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [NC10 bacterium
           'Dutch sediment']
          Length = 355

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 75/254 (29%), Positives = 123/254 (48%), Gaps = 21/254 (8%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           +  A    S++++D +   +   +   E R PAS TK+MT  +I E  Q     L+ ++ 
Sbjct: 85  DPEALSASSALLMDADTGAILFARHHMERRSPASTTKIMTALLILEEGQ-----LDDKVL 139

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           +S+ AA  + + L L+          + A++ +SAND + A  E + GSE++F   M+ K
Sbjct: 140 ISERAAAVSGTGLGLRRGQRVVLRDLLWAILLKSANDAALAAAEHVGGSEEQFVARMNAK 199

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-----FRYR 220
           A  +GMQ T + N  GL  ++  +TA D AIL     +N P + +    R+        R
Sbjct: 200 AASLGMQGTQFSNPHGLDHQDHYSTAFDLAILARQALRN-PTFARMVQTREAQVAILTGR 258

Query: 221 N------RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           N      R+I  HN+LL +    DG+KTGYT  +G  +V S    D  ++AV++      
Sbjct: 259 NGSVVKRRVIRTHNQLLGQFSGADGVKTGYTSLAGRCLVASATRGDHQLIAVLL---NDS 315

Query: 275 ERDQKALELITSFL 288
            R  +A  L+    
Sbjct: 316 RRWVEAAALLEYGF 329


>gi|296332253|ref|ZP_06874715.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674955|ref|YP_003866627.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150567|gb|EFG91454.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413199|gb|ADM38318.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 382

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 77/317 (24%), Positives = 138/317 (43%), Gaps = 14/317 (4%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           ++ + ++     ++ + ++ A         S+IVID    ++   K   E R  AS+TK+
Sbjct: 5   KKAVFMVMISFLIANVNVNTAHAAIDVSAKSAIVIDGASGRVLFAKDEHEKRRIASITKI 64

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT  +  E  +     ++  + VS  A     S +YL E      +  +  L+ RS ND 
Sbjct: 65  MTAVLAIESGK-----MDETVTVSANAVRTEGSAIYLTEGQKVKLKDLVYGLMLRSGNDA 119

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLR 202
           + A  E + GS   F  +M+ KA+++GM+NT ++N  GL D +N  +TA D A+L     
Sbjct: 120 AVAIAEHVGGSLDGFVYMMNQKAEQLGMENTRFQNPHGLDDHENHYSTAYDMALLTKYAM 179

Query: 203 KNFPQYYKYFSIRKFRYRNR--IITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYK 259
           K    Y K    + ++      +  N NKLL        G KTGYT+ +   +V++    
Sbjct: 180 K-LKDYQKISGTKIYKAETMESVWKNKNKLLTMLYRYSTGGKTGYTKLAKRTLVSTASKD 238

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKK-L 318
              ++AV +  P   +   K    +    +   +  +    K  L  T  +    IK+ +
Sbjct: 239 GIDLIAVTINDPDDWDDHMKMFNYVFDHYQTYLIAKKGDIPK--LKGTFYESKAFIKRDI 296

Query: 319 KRTYSQFKKIDAKAHST 335
               ++ +K D    +T
Sbjct: 297 TYLLTEEEKEDVNIQTT 313


>gi|304407580|ref|ZP_07389232.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           curdlanolyticus YK9]
 gi|304343531|gb|EFM09373.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           curdlanolyticus YK9]
          Length = 326

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 72/264 (27%), Positives = 122/264 (46%), Gaps = 24/264 (9%)

Query: 53  KYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I+ID N  Q    +  ++   PAS++K+MT  ++ E +++ KL    Q+ VS  AA
Sbjct: 39  AKSAILIDANTGQTIFAQGANKALPPASMSKLMTELVVLETVRAGKLGWKDQVTVSPYAA 98

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +   L+     T ++   ++   SAND + A  E+I GSE++F  LM+ KAK IG+
Sbjct: 99  NVLGAGAGLRNGERHTVKELFESMAVHSANDSAVALAEWIGGSEREFVKLMNEKAKAIGL 158

Query: 172 QN-TIYKNASGL-------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
            + T++ NA+GL              D   + TARD A+L   + +++P+     S    
Sbjct: 159 SDSTVFANATGLSSSDLAMYAQSAAADGETVMTARDVALLARYMIRSYPEVLTITSREAV 218

Query: 218 RYR-----NRIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                   +  +   N +L          DG+KTGYT  +G+    +       ++AVVM
Sbjct: 219 GLNPGASDDAALRTTNLMLPGERFAYPGSDGLKTGYTERAGYCFTGTTSRGGTRLIAVVM 278

Query: 269 GMPTSQERDQKALELITSFLEKKT 292
           G  ++  R  +   L      +K 
Sbjct: 279 GAESADGRFIETERLYDLGFGEKK 302


>gi|317128528|ref|YP_004094810.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473476|gb|ADU30079.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           cellulosilyticus DSM 2522]
          Length = 377

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 69/277 (24%), Positives = 122/277 (44%), Gaps = 14/277 (5%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKM 83
           ++ I  +      + I  S A+         +I+++    ++   K+       AS+TK+
Sbjct: 3   KKIIAFILISTLFTDITASAATYPGNVSARGAILMEQESGRVLYEKEAHTQMRIASITKI 62

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT  +  E  +     L+  + VS  A     S +YL  +        +  L+ RS ND 
Sbjct: 63  MTAILAIESGE-----LDEWVTVSSNAEGTEGSSIYLVAEEEIQLRDLVYGLMLRSGNDS 117

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLR 202
           + A  E + GS + F  +M+ KA+++GM  T++ N  GL D +   +TA D A+L     
Sbjct: 118 AVAIAEHVGGSLEGFVYMMNEKAQELGMTRTVFSNPHGLDDHEEHYSTAYDMALLTRYAM 177

Query: 203 KNFPQYYKYFSIRKFRYRN-----RIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSL 256
            N  +Y +    + +R +N     R+  N N+LL +   N  G KTGYT+ +   +V++ 
Sbjct: 178 DN-EEYKEIAGTKSYRSKNKDDHYRVFNNKNRLLTQLYRNSTGGKTGYTKRAKRTLVSTA 236

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
             +D  ++AV +  P          E   S     T+
Sbjct: 237 EKEDVELIAVTINAPDDWNDHISMFEWAFSTFNLTTI 273


>gi|142820|gb|AAA22377.1| penicillin-binding protein 5 [Bacillus subtilis]
          Length = 382

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 77/322 (23%), Positives = 143/322 (44%), Gaps = 24/322 (7%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKM 83
           ++ + ++     ++ + ++ A         S+I+ID    ++   K +   R  AS+TK+
Sbjct: 5   KKAVFVIMISFLIATVNVNTAHAAIDVSAKSAIIIDGASGRVLYAKDEHQKRRIASITKI 64

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT  +  E  +     ++  + VS  A     S +YL E      +  +  L+ RS ND 
Sbjct: 65  MTAVLAIESGK-----MDQTVTVSANAVRTEGSAIYLTEGQKVKLKDLVYGLMLRSGNDA 119

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLR 202
           + A  E + GS   F  +M+ KA+++GM+NT ++N  GL D +N  +TA D AIL     
Sbjct: 120 AVAIAEHVGGSLDGFVYMMNQKAEQLGMKNTRFQNPHGLDDHENHYSTAYDMAILTKYAI 179

Query: 203 KNFPQYYKYFSIRKFRYRNR-------IITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVT 254
           +      +  S + FR++N        +  N NKLL        G KTGYT+ +   +V+
Sbjct: 180 E-----AERLS-KDFRHKNIQAETMESVWKNKNKLLTMLYPYSTGGKTGYTKLAKRTLVS 233

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLM 314
           +       ++AV +  P   +   K    +    +   +  +    K  L  T  +    
Sbjct: 234 TASKDGIDLIAVTINDPNDWDDHMKMFNYVFEHYQTYLIAKKGDIPK--LKGTFYESKAF 291

Query: 315 IKK-LKRTYSQFKKIDAKAHST 335
           IK+ +    ++ +K + K ++T
Sbjct: 292 IKRDITYLLTEEEKENVKINTT 313


>gi|164687904|ref|ZP_02211932.1| hypothetical protein CLOBAR_01549 [Clostridium bartlettii DSM
           16795]
 gi|164602317|gb|EDQ95782.1| hypothetical protein CLOBAR_01549 [Clostridium bartlettii DSM
           16795]
          Length = 399

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 87/313 (27%), Positives = 145/313 (46%), Gaps = 29/313 (9%)

Query: 24  IQRNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP 77
           ++   + + K+L LSII+      IS+A +   +    SI+ID   N+    K  + + P
Sbjct: 1   MKDLKKFVSKVLLLSIILNIFTTSISLAYDNIDRYSKGSILIDQLTNRTLYEKNPDKKMP 60

Query: 78  -ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            ASL+KMMT  I  E ++  K+  N  I + +  A    S   LK        + +  L+
Sbjct: 61  LASLSKMMTFLIAIESIKEGKVKENDIIEIDQEIAKVKGSSYKLKVGEKVPLIELMNGLM 120

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----------HDKN 186
             S ND + A  + I GS   F  +M+ K K++GM+NT + N +GL            K 
Sbjct: 121 IVSGNDAAIAIAKHIGGSVDDFVKIMNKKTKELGMKNTSFVNPNGLPIYSLKEPSKPPKE 180

Query: 187 QITTARDQAILGILLRKNFP-QYYKYFSIRKFRYRNRII--TNHNKLLNKMHNIDGIKTG 243
            I+T RD +IL   +  N+  +       + + Y  R     N N LL  + ++DG+KTG
Sbjct: 181 NISTPRDISILAKYMFDNYEKEVTSITDKQVYSYPERGFCKNNTNVLLQLIPDVDGVKTG 240

Query: 244 YTRNSGFNIVTSLRYK-------DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQ 296
           YT N+G+ +  S++         D+ ++ VV+G     +R Q ++ L+     K+  K +
Sbjct: 241 YTGNAGYCLCFSMKTHKDDKNDCDNRLIGVVLGTNHKNKRTQASMSLLEYG--KQNFKTK 298

Query: 297 QTHRKDNLSSTSL 309
              +KD L     
Sbjct: 299 NIAQKDELVGKKY 311


>gi|190576060|ref|YP_001973905.1| putative family S11 unassigned peptidase [Stenotrophomonas
           maltophilia K279a]
 gi|190013982|emb|CAQ47622.1| putative family S11 unassigned peptidase [Stenotrophomonas
           maltophilia K279a]
          Length = 264

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 116/257 (45%), Gaps = 11/257 (4%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           M S   A+   SSI +D     +      +  R PASLTK+MT Y  +E ++ +      
Sbjct: 1   MPSPAPARAPLSSITLDAATFAVIHQHNADIARQPASLTKLMTAYAAYECVEERGRSWGD 60

Query: 103 QIPV---SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           ++ +      A   + +++ L      T  + +  L+  S ND + A    + GS+  F 
Sbjct: 61  EVTIAADDVHAVADDETRMGLVPGETVTLARLLEGLMIVSGNDAALAIARHLDGSQPAFL 120

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             M+  A+++G++++ + + SG+   +  ++ARD A+L   L  + PQ     + R F +
Sbjct: 121 ERMNRHARQLGLRSSWFASVSGITTPHHASSARDMAVLAACLLNDHPQILAITAQRAFVH 180

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK--DD----PIVAVVMGMPTS 273
            +    N N LL     +DG+KTGYT+ +GF +  +             ++ VV+G  + 
Sbjct: 181 GSFSRNNQNALLG-DDGVDGLKTGYTQAAGFCLAATACRAVPGRDQPVRLITVVLGSESR 239

Query: 274 QERDQKALELITSFLEK 290
             RD    + + +    
Sbjct: 240 DARDALVRDQLAAGFAT 256


>gi|310644848|ref|YP_003949607.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Paenibacillus
           polymyxa SC2]
 gi|309249799|gb|ADO59366.1| Peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
           polymyxa SC2]
          Length = 313

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 133/289 (46%), Gaps = 25/289 (8%)

Query: 29  QLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMM 84
            ++  +L + I +      L  KP     +++++D++  ++      D+P   A+++K+M
Sbjct: 10  AIVVPVLIILIFITLGPRLLIGKPNVDADAAVLMDMHTGELLMDVNGDKPMPSANMSKLM 69

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T  ++ E +++ +L  N ++ +S+ A+T     L L+     T  +   +++  SAND +
Sbjct: 70  TELLVLEDIRTGRLGWNDEVRISRYASTVGGVNLSLRYGERMTVSELFQSMVVYSANDAA 129

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQ-NTIYKNASGLHD----KNQ--------ITTA 191
            A  E  SG+E  F   M+ KA +IG+  ++ + NASG        N           TA
Sbjct: 130 VALAERSSGNEYAFVKRMNEKAAQIGLSPDSRFSNASGAGQSELGPNHPKDIRGETKMTA 189

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKF--RYRNRIITNHNKLL------NKMHNIDGIKTG 243
            D A L   L  + P+  +  S  +   + +   I+N N +L            DG+K G
Sbjct: 190 SDTAKLASYLITSHPEILRTSSRTQMELKDKGIYISNTNWMLPSLAGPYSYAGTDGLKAG 249

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           YT ++G+    +       +VAVV+G P+ +ER ++  +L        T
Sbjct: 250 YTSDAGYCFTGTAEQHGKRLVAVVLGAPSKEERFEQTRKLFDYGFSLST 298


>gi|86357779|ref|YP_469671.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42]
 gi|86281881|gb|ABC90944.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42]
          Length = 360

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 123/237 (51%), Gaps = 6/237 (2%)

Query: 58  VIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           +I+ +   +   K  D+   PASL K+MT+ ++F+ +   ++ L+T+ PVS+ A     +
Sbjct: 1   MIEASTGTVLLAKNEDQSFSPASLAKLMTMDLVFDAVTKGQITLDTEYPVSEYAWRTGGA 60

Query: 117 -----KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                 ++   K+    E  I  +  + AND      E ++GSE++FA  M+ +A+++GM
Sbjct: 61  PSRTATMFAALKSRVRVEDLIKGVAIQGANDSCIIIAEGMAGSEQQFAQSMTRRARELGM 120

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +  ++ N++GL D     TAR+   L   L++++P  Y YF+ + F +      N N LL
Sbjct: 121 EKAVFGNSTGLPDGKSKVTAREMVTLAAALQQSYPNLYPYFAQQDFEWNKIFQRNRNPLL 180

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
                 DG+ TG+    G++IV S++     +   + G+ + +ER ++A  ++   L
Sbjct: 181 GLDLGADGLATGFAEGEGYSIVASVQRDGRRLFLALAGIASDKERTEEAKRVLEWGL 237


>gi|85708665|ref|ZP_01039731.1| D-alanyl-D-alanine carboxypeptidase [Erythrobacter sp. NAP1]
 gi|85690199|gb|EAQ30202.1| D-alanyl-D-alanine carboxypeptidase [Erythrobacter sp. NAP1]
          Length = 403

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 110/240 (45%), Gaps = 6/240 (2%)

Query: 56  SIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ- 113
           ++++DV   Q+   +  + R+ PAS+TK+MTL+  FE ++   L     + +S     + 
Sbjct: 56  ALLVDVTSGQVLYSRNADRRFVPASITKVMTLFHAFELIEEGDLDPRQTLVMSDEVWEEW 115

Query: 114 --NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S +++        +  +  +   SAND S    E  +GS   +   M+ +A+ + M
Sbjct: 116 GGEGSTMWINAGDRVAVDDLLTGIANISANDGSAMLAEGQAGSISAWLDGMNQRARSLEM 175

Query: 172 QNTIYKNASGLHDKN-QITTARDQAILGILLRKNFPQ-YYKYFSIRKFRYRNRIITNHNK 229
            N+ +   +G  D+    TTA D   L   L    PQ Y +Y     FRY +    N + 
Sbjct: 176 VNSHFGTPNGWPDEGRTFTTASDLVKLAQALISRHPQKYARYIGKPGFRYNDIEQFNRDP 235

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           ++ ++   DGIKTGYT  SG   V S +     +V VV G+     R + A +LI    +
Sbjct: 236 MIGRVAGADGIKTGYTNESGLGYVGSAKRDGQRLVVVVAGISRGSIRARAARDLIEWGFD 295


>gi|167630369|ref|YP_001680868.1| d-alanyl-d-alanine carboxypeptidase [Heliobacterium modesticaldum
           Ice1]
 gi|167593109|gb|ABZ84857.1| d-alanyl-d-alanine carboxypeptidase [Heliobacterium modesticaldum
           Ice1]
          Length = 259

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 68/269 (25%), Positives = 126/269 (46%), Gaps = 18/269 (6%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTL 86
           + L   +L     + S + ++ A    +++++D    ++   +Q   PR PAS TK++T 
Sbjct: 1   MCLSPFLLLGGPALCSASPQVTAD---AAVLMDAETGRILFERQAHQPRPPASTTKIVTA 57

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            + FE+       L  ++ +S+ A +   + + L           +   + RS ND   A
Sbjct: 58  LLGFEFGD-----LEDEVIISQKAGSTGEASINLFPGERVALGDLLTGALVRSGNDACVA 112

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E I+GSE+ F + M+ K++ IG +++ + N +GL  K+  ++A D A++     +  P
Sbjct: 113 IAEHIAGSEEFFTLWMTAKSRIIGGRSSQFFNTNGLPHKHHWSSAYDLAVVTREAMRR-P 171

Query: 207 QYYKYFSIRKFRYRNR-----IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           ++      R+   +NR      I N N LL      DG+KTG TR +G  +V S    + 
Sbjct: 172 EFAATVRSRRATLKNRQGWPKEIKNTNALLWSYPFADGVKTGTTRAAGACLVASATKNNR 231

Query: 262 PIVAVVMGMPTSQERDQKALELITSFLEK 290
            ++AVV+    S +R   +L L      +
Sbjct: 232 QLIAVVL---HSDDRFGDSLRLFEYGFNQ 257


>gi|328543897|ref|YP_004304006.1| D-alanyl-D-alanine carboxypeptidase family [polymorphum gilvum
           SL003B-26A1]
 gi|326413641|gb|ADZ70704.1| D-alanyl-D-alanine carboxypeptidase family [Polymorphum gilvum
           SL003B-26A1]
          Length = 393

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 66/255 (25%), Positives = 120/255 (47%), Gaps = 6/255 (2%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
             + A+++      S+ +ID +   +   K  DE   P SL K+MT  ++F+ L+S ++ 
Sbjct: 27  AFAAAADVLETRARSAFLIDHSSRTVLYAKAPDEAFAPGSLAKVMTAAVVFDALKSGEVF 86

Query: 100 LNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
             T   VS+ A          S ++   ++       +  L+  +AND +    E ++GS
Sbjct: 87  EETLFKVSEHAWRTGGAPSRTSTMFAAVRSEIPVADLLRGLLVHNANDAAIVLAEGLAGS 146

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           E  FA  M+  A +IGM ++ + N +G  D    TTARD A L   +       Y+ FS+
Sbjct: 147 ETAFAQRMTALATRIGMISSRFANPTGFEDPGNRTTARDMARLAAYILDTHRTRYELFSL 206

Query: 215 RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
            +F +      N N LL ++  +DG+  G ++  G++ + S+      ++AV+ G+ T +
Sbjct: 207 PEFTWNRIFQRNKNPLLGEIRGLDGLGAGLSQADGYSGLASVERDGRRVIAVIAGLDTDK 266

Query: 275 ERDQKALELITSFLE 289
            R     +L+    E
Sbjct: 267 MRLAALRDLVEGAWE 281


>gi|167462338|ref|ZP_02327427.1| D-alanyl-D-alanine carboxypeptidase [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 395

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 75/266 (28%), Positives = 119/266 (44%), Gaps = 20/266 (7%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++ +IDV+  ++   +  D+    AS TK+MT  I  E  +     L+  + V K AA
Sbjct: 33  AEAAALIDVHSGRILYSQSGDKEMRVASTTKIMTAIIAIEQGR-----LSDMVKVGKNAA 87

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            +  S LYLK     +    +  ++ RS ND +    E I GS + FA LM+ KA  +GM
Sbjct: 88  GKEGSSLYLKLGEEMSLHNLLYGMMLRSGNDAAITIAEHIGGSIEGFAYLMNEKASLLGM 147

Query: 172 QNTIYKNASGLHDK---NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN------R 222
            +T + N SGL D       ++A D A L     KN P +      +  +  N       
Sbjct: 148 AHTHFTNPSGLDDGKEMKHYSSANDMAKLTAYALKN-PVFRDIVKTKTKKAPNPNANWDY 206

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
             +N NK+LN     DG+KTGYT+ +   +V+S    +  + AV +             +
Sbjct: 207 SWSNKNKMLNLYEGADGVKTGYTKLAYRCLVSSATRGNQQLAAVTLNDGND---WADHAK 263

Query: 283 LITSFLEKKTLKHQQTHRKDNLSSTS 308
           L+    E   LK Q   + + +S T+
Sbjct: 264 LLDYGFETYPLK-QVLQKGETVSGTN 288


>gi|210621813|ref|ZP_03292842.1| hypothetical protein CLOHIR_00787 [Clostridium hiranonis DSM 13275]
 gi|210154577|gb|EEA85583.1| hypothetical protein CLOHIR_00787 [Clostridium hiranonis DSM 13275]
          Length = 420

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 82/333 (24%), Positives = 156/333 (46%), Gaps = 31/333 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP-----KYSSIVIDVNKNQMTGFKQDEPRYP- 77
           +++   +M  +LF+ I     A+E   KP       +SI++D    ++   K+ + + P 
Sbjct: 5   LKKLTAIMLAVLFV-IPATGYAAEAKKKPVVEIYSKNSILVDQKTGRVITSKEPDKQVPL 63

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS++K+MT Y+  + +++ ++  +  + + K     + S ++LKE       + +  L+ 
Sbjct: 64  ASISKVMTFYVAQDAIKNGEVKKDDLVTIDKKMLKVSGSTMHLKEGEKVKFNELLKGLMI 123

Query: 138 RSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGL----------HDKN 186
            SAND + A    +  G    F   M+ KAK++GM+NT + N +GL            K 
Sbjct: 124 VSANDGAVAIASHVCKGDVDAFVDRMNAKAKELGMKNTYFINPNGLPIYDWTKKDGDPKQ 183

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRY---RNRIITNHNKLLNKMHNIDGIKTG 243
             +TARD A +   L  ++ +     +  K  +   R+    N N LL+   N+DG+KTG
Sbjct: 184 NHSTARDIATMTKNLLDDYEEETIAITDCKLDHAPSRDCNYYNTNPLLHMHSNVDGLKTG 243

Query: 244 YTRNSGFNIVTSLRYK-------DDPIVAVVMGMPTSQERDQKALEL--ITSFLEKKTL- 293
           YT  +G+ +V + +         D+ ++ VVMG    ++R + A  L  +    E K + 
Sbjct: 244 YTDLAGYCLVFTDKMNSDGKSDMDNRMIGVVMGNWCKEDRVRSANALYNLGENFETKLMC 303

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
           K  +T    N+ + S   ++ ++  +  Y   K
Sbjct: 304 KKGETVATGNIDNISDLDNIDLQPKRDCYGVVK 336


>gi|167759042|ref|ZP_02431169.1| hypothetical protein CLOSCI_01389 [Clostridium scindens ATCC 35704]
 gi|167663449|gb|EDS07579.1| hypothetical protein CLOSCI_01389 [Clostridium scindens ATCC 35704]
          Length = 406

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 71/341 (20%), Positives = 152/341 (44%), Gaps = 36/341 (10%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASEL-----HAKP----KYSSIVIDVNKNQMTGFKQ- 71
           ++  R  +L+G +L   +++   +++        +P      S++++D +  ++   K  
Sbjct: 2   VWQMRKNRLLGILLACILLIQPFSAQAKESDAADEPDNLYAQSAVLMDADSGRVLFGKNE 61

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +E +  AS TK+MT  +  E ++  ++     +  S  AA+Q   +L ++ K  +  +  
Sbjct: 62  NEAKPMASTTKIMTCIMALENMEEGQI-----VAASDYAASQPKVRLGVRGKEEYYLKDI 116

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN----Q 187
           + +L+  S ND +    E I+GS + FA LM+ KA++IG ++T +   +GL   +     
Sbjct: 117 LYSLMLESHNDSAVVVAEGIAGSVEAFAGLMNQKAEEIGCKDTYFVTPNGLDAYDDGGTH 176

Query: 188 ITTARDQAILGILLRKNFP---QYYKYFSIRKFRYRN------RIITNHNKLLNKMHNID 238
            TTARD A +        P   ++ +    + + + N          NHN  L+ M    
Sbjct: 177 STTARDLASIMRYCIMESPKKDEFLEITGTKNYHFTNVAGDREFSCNNHNAFLDMMDGAL 236

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVM--GMPTSQE-RDQKALELITSFLEKKTLKH 295
             KTG+T ++G+  V +LR      +  ++  G P +++ + +    L+   L     ++
Sbjct: 237 TGKTGFTGDAGYCYVGALRKDGKTFIVALLACGWPNNKDYKWKDTKALMEYGLANY--EY 294

Query: 296 QQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
           +    +  LS   +++ +        Y +  K+ A     +
Sbjct: 295 RNVWEEPALSQIRVQEGV---SAGNPYKRESKVQAVVKGGE 332


>gi|322381780|ref|ZP_08055734.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154168|gb|EFX46490.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 386

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 75/266 (28%), Positives = 119/266 (44%), Gaps = 20/266 (7%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++ +IDV+  ++   +  D+    AS TK+MT  I  E  +     L+  + V K AA
Sbjct: 24  AEAAALIDVHSGRILYSQSGDKEMRVASTTKIMTAIIAIEQGR-----LSDMVKVGKNAA 78

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            +  S LYLK     +    +  ++ RS ND +    E I GS + FA LM+ KA  +GM
Sbjct: 79  GKEGSSLYLKLGEEMSLHNLLYGMMLRSGNDAAITIAEHIGGSIEGFAYLMNEKASLLGM 138

Query: 172 QNTIYKNASGLHDK---NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN------R 222
            +T + N SGL D       ++A D A L     KN P +      +  +  N       
Sbjct: 139 AHTHFTNPSGLDDGKEMKHYSSANDMAKLTAYALKN-PVFRDIVKTKTKKAPNPNANWDY 197

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
             +N NK+LN     DG+KTGYT+ +   +V+S    +  + AV +             +
Sbjct: 198 SWSNKNKMLNLYEGADGVKTGYTKLAYRCLVSSATRGNQQLAAVTLNDGND---WADHAK 254

Query: 283 LITSFLEKKTLKHQQTHRKDNLSSTS 308
           L+    E   LK Q   + + +S T+
Sbjct: 255 LLDYGFETYPLK-QVLQKGETVSGTN 279


>gi|197303547|ref|ZP_03168586.1| hypothetical protein RUMLAC_02269 [Ruminococcus lactaris ATCC
           29176]
 gi|197297545|gb|EDY32106.1| hypothetical protein RUMLAC_02269 [Ruminococcus lactaris ATCC
           29176]
          Length = 434

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 70/263 (26%), Positives = 119/263 (45%), Gaps = 22/263 (8%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++++D +  ++   K   +PR  AS TK+MT  +  E     +     +I VS  AA
Sbjct: 67  ARSAVLMDGDSGRILFEKNGSDPRPMASTTKIMTCILALEASDPSR-----KITVSSQAA 121

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +Q    L + E   F  +  + +L+  S ND + A  E I GS + FA  M+ KA++IG 
Sbjct: 122 SQPKVHLGMTEGQSFYLKDLLYSLMLESHNDAAVAIAEGIDGSVEAFAQRMNQKAEEIGC 181

Query: 172 QNTIYKNASGLHDK----NQITTARDQAILGILLRKNFPQ---YYKYFSIRKFRYRN--- 221
           +NT + + +GL  +    N  TTAR+ A++        PQ   + K     ++ +++   
Sbjct: 182 KNTYFISPNGLDAQDSQSNHHTTARELALILRYCIMVSPQREAFLKITRTMQYTFQDCEK 241

Query: 222 ---RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-- 276
                  NHN  LN M      KTG+T ++G+  V +L+  D   +  ++       R  
Sbjct: 242 NFSYSCNNHNAFLNMMEGALTGKTGFTADAGYCYVGALQRDDRTFIVALLACGWPNNRNY 301

Query: 277 -DQKALELITSFLEKKTLKHQQT 298
                 +L+T  LE    +  Q 
Sbjct: 302 KWMDTKKLMTYGLENYVYRDFQV 324


>gi|311029700|ref|ZP_07707790.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Bacillus sp. m3-13]
          Length = 414

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 74/317 (23%), Positives = 142/317 (44%), Gaps = 19/317 (5%)

Query: 31  MGKILFLSIIMISMASELHAKPK-----YSSIVIDVNKNQMTGFKQDEP-RYPASLTKMM 84
           +  I+ L +++   +  +HA+        S I+ID         K  +   YPAS+TK++
Sbjct: 7   LCVIIPLLVMVFGNSITVHAEGPGDLFSESVILIDSKSGNTLYEKDSKREMYPASITKIV 66

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T  I  E       +L   + VS+ A  Q+ +++YL E    T ++ +  L+  S ND  
Sbjct: 67  TAIIAIEEG-----NLQDIVTVSENARDQDGTRVYLLEGEKVTLKKLVQGLLINSGNDAG 121

Query: 145 TAFGEFISGSEKKFAILMSNKAKK-IGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           TA  E + GSEK FA  M+   K+ +G++NT + N  GL+  + +TTA+D A +     K
Sbjct: 122 TAIAEHLDGSEKAFAKRMNTFVKEKVGVKNTNFTNPHGLYHPDHVTTAQDMAKIAQYAMK 181

Query: 204 NFPQYYKYFSIRKFRY----RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           N   + +    ++  +        + NH++LL       G+K GY   SG  +VTS +  
Sbjct: 182 N-ETFREIVGTKEMEWIGEGWETTLFNHHRLLWDYEGTTGVKNGYVPESGHTLVTSAKRD 240

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
              ++ V M   +     +  + L+            +  + + ++  S ++ ++ K + 
Sbjct: 241 GMDLIVVTMKAASKYYIYKDTMTLLDYGFAN--FITDEIKKGEMVTDASGREYMLAKNVH 298

Query: 320 RTYSQFKKIDAKAHSTQ 336
                 + I+ + +  +
Sbjct: 299 VAKRDEETINLRVNKDK 315


>gi|188586265|ref|YP_001917810.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350952|gb|ACB85222.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 387

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 124/258 (48%), Gaps = 15/258 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+ ++DV   ++   +    + P AS TK+MT  +  E     + +LN  +  S+ A+
Sbjct: 52  ATSACLVDVKTGRVLYEQNSHKQLPMASTTKVMTALLSLE-----RGNLNEVVTASEAAS 106

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S +YL+E    T E  +  L+  S ND + A  E I G  + FA  M+++A+ +G 
Sbjct: 107 EVEGSSIYLQEDEQLTLEAMLYGLMLESGNDAAHAIAEHIDGDIESFARNMTDRAESLGA 166

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR-------KFRYRNRII 224
           +NT ++N  GL   N  +TA D  I+     K   ++ +  S +       K     R +
Sbjct: 167 KNTNFQNPHGLPSDNHYSTAYDMTIIAKEALKKS-KFAEIVSTKEKLIPWEKGDADWRYL 225

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL- 283
            N NKLL+++   DG+KTG+T  +G  ++ S    +  +V  V+  P   +  +  LE  
Sbjct: 226 NNDNKLLDELSEADGVKTGWTEAAGRCLIFSGTKDERQVVGTVLKAPKMYQDAENLLEYG 285

Query: 284 ITSFLEKKTLKHQQTHRK 301
           I  F EK+ ++  Q  R+
Sbjct: 286 IYQFNEKQVIQKGQLVRE 303


>gi|169334343|ref|ZP_02861536.1| hypothetical protein ANASTE_00741 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259060|gb|EDS73026.1| hypothetical protein ANASTE_00741 [Anaerofustis stercorihominis DSM
           17244]
          Length = 369

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 132/295 (44%), Gaps = 17/295 (5%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           +++I ++  ++ L  +      +       +  +++   N++      +E    AS TK+
Sbjct: 3   KKSIAIIIVMMILINLPNFGGVKAANVSAQAYCIMEAGSNRVLYSSNMNEKLPMASTTKV 62

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT  +  E     K  LN  I + K       + +YLKE    T E  +  ++  S ND 
Sbjct: 63  MTAVLALE-----KGSLNDVIEIKKEWTGIEGTSIYLKEGEKLTLEDLLHGMMLVSGNDA 117

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           + +   +I GS   FA +M+ KAK++GM+NT + N +GL D +  TTA D  +L     K
Sbjct: 118 AVSIACYIGGSIDNFAKMMNKKAKELGMKNTHFTNPNGLPDDDHYTTAYDFTLLASYAMK 177

Query: 204 NFPQYYKYFSIRKF------RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
           N   + K  +  K+      +   R + N NKLL      +G+KTG+T+ +    V + +
Sbjct: 178 N-ENFVKIINDEKWSMPYEGKANQRTLYNKNKLLKSYEGANGVKTGFTKKARKCFVLAAK 236

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
             +  +V V++         +++   +       TLK +   + D + +  +K S
Sbjct: 237 RNNMQVVGVLLHTEN---HYEESKMFLDMAFNNFTLK-KVIEKGDYVKTVPMKGS 287


>gi|288553434|ref|YP_003425369.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudofirmus OF4]
 gi|288544594|gb|ADC48477.1| D-alanyl-D-alanine carboxypeptidase S11 serine type [Bacillus
           pseudofirmus OF4]
          Length = 374

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 136/307 (44%), Gaps = 24/307 (7%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYS---------SIVIDVNKNQMTGFKQDEPR 75
           +R I  +  I+ L  +   +A  +  + K S         +++ID    +    K    R
Sbjct: 3   KRGITRVKSIMLLLCVSFLIAQAVPQQAKASDTPVIESETAVLIDGATGETLWGKDSTKR 62

Query: 76  -YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
            YPAS+TK++T  +  E       +L  ++ VS+       +++YL      +  + +  
Sbjct: 63  MYPASVTKIITAIVAIEEG-----NLEEKVAVSENVMDVIGTRVYLLPGEEVSLLKLVQG 117

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKK-IGMQNTIYKNASGLHDKNQITTARD 193
           L+  S ND   A  E + GSE+ FA  M+   ++ IG++++ + N  GL D+N  TTA+D
Sbjct: 118 LMINSGNDAGLAIAEHMDGSEEAFAKRMNRFVEEEIGVKDSHFTNPHGLFDENHYTTAKD 177

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
            A++     +N   + +    ++  +        I NH+++L     + G+K G+ + SG
Sbjct: 178 LAMITKYAMEN-EVFKEIAQTKEMEWIGEGWETTIYNHHRMLWDYDGVTGVKNGFVQRSG 236

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK---TLKHQQTHRKDNLSS 306
           F + T++   D  ++AV +  P ++   Q    L      +     +K  +    ++   
Sbjct: 237 FTLSTAVERDDMELIAVTLNAPAAKVSYQDTAALFDYGFTRYEPHVIKSDRLFSDESGRK 296

Query: 307 TSLKKSL 313
             L+  +
Sbjct: 297 YELENDI 303


>gi|49474221|ref|YP_032263.1| penicillin-binding protein [Bartonella quintana str. Toulouse]
 gi|49239725|emb|CAF26104.1| Penicillin-binding protein [Bartonella quintana str. Toulouse]
          Length = 387

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 77/317 (24%), Positives = 146/317 (46%), Gaps = 16/317 (5%)

Query: 33  KILFLSIIMISMASELHAKP-KYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLY 87
           +ILF    M+ +     A+  + S+   +++D + + +   KQ D P +PASL K+MT  
Sbjct: 6   RILFTLFWMLILDGWGRAQDFQTSASQLLLLDNDTDTILFEKQSDIPFFPASLVKLMTAE 65

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRSAND 142
           ++F  L+   L       VS+ A  +       + ++ K KT  +    +  LI  + ND
Sbjct: 66  VVFYQLKQGLLSSTQTFEVSENAWRKGGAPSGTTTMFAKVKTKISVSDLLRGLIIVNGND 125

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            +    E ISGSE  FA LM+ +A+ +G+ ++ + N +GL ++ Q+ T RD  +L   + 
Sbjct: 126 AAITLAEGISGSEADFAKLMNQRARTLGLSHSHFVNPTGLSEEGQLVTLRDMIVLARHIA 185

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
             +P YY  +S   F +      N N L++K   ++G   GY+   GF++V +       
Sbjct: 186 HTYPNYYALYSEPNFTWNKIFQRNKNPLISKEMGVEGFAFGYSEKEGFSMVVAAYKNHRR 245

Query: 263 IVAVVMGMPTSQERDQKALELITSFLE----KKTLKHQQTHRKDNL-SSTSLKKSLMIKK 317
           +   + G+   +   ++   ++   +     K      +T    ++   T     L++K+
Sbjct: 246 LFLAINGLQDGKGHTKEIERILQWGMTAFDLKTIFIKGETVGHASVYGGTQNSVPLIVKE 305

Query: 318 -LKRTYSQFKKIDAKAH 333
            +    S  KK++ KA 
Sbjct: 306 PISFMLSNEKKMNVKAK 322


>gi|229542251|ref|ZP_04431311.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           coagulans 36D1]
 gi|229326671|gb|EEN92346.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           coagulans 36D1]
          Length = 468

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 80/375 (21%), Positives = 168/375 (44%), Gaps = 60/375 (16%)

Query: 16  TYPYGSIYIQRNIQLMGKILFLSIIMIS-----MASELHAKP-----KYSSIVIDVNKNQ 65
           TY  G + +++++Q M    FL++++ +     +   +HA+        ++I++D +  Q
Sbjct: 22  TYLDGGLKVKKSLQKMA-FAFLALLLTAGVVQQVPKTVHAQDQLDIHAKAAIIVDADNGQ 80

Query: 66  MTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYL 120
           +   K  ++    AS++KMMT Y++ + +  KK+  N ++ +S  A      +  S + L
Sbjct: 81  ILYEKNANQALGIASMSKMMTEYLLLKAIHEKKVSWNQKVTISDYAYRISQNRALSNVPL 140

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           ++   +T ++   A+   SAN  + A  E + G+EK +  +M+ +AK  G+ +  + NA+
Sbjct: 141 RKGEKYTVKELFQAMAIYSANGATIAIAETLGGTEKNYLNMMNKQAKAFGLTDYKFVNAT 200

Query: 181 GLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----N 221
           GL++++               + +A+  A +   L  ++P+  +  S  K ++R      
Sbjct: 201 GLNNEDLQGMQPEGTGRTEENLVSAKSVAKIAYHLIHDYPEILQTTSTAKMKFRAGTDDE 260

Query: 222 RIITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM------GMP 271
             + N N +L  +      +DG+KTG T N+G+    + +     I+ VV+      G  
Sbjct: 261 IAMQNWNWMLPSLVYGRQGVDGLKTGNTDNAGYCFTGTAKQNGMRIITVVLHAEDANGNS 320

Query: 272 TSQERDQKALELITSFLEKKT-----LKHQQTHRKDNLSSTSLKKSLMIKKLK------- 319
           T + R     +L+       T      K  Q  +   + S   K++ ++ K         
Sbjct: 321 TIKSRFDVTNKLMDYAFSNFTEKTLYPKGYQVKKTVTVKSGKEKQASVVTKAPLKVAVKN 380

Query: 320 ---RTYSQFKKIDAK 331
              + Y+   K D+K
Sbjct: 381 GEGKMYTPVVKFDSK 395


>gi|83590204|ref|YP_430213.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica
           ATCC 39073]
 gi|83573118|gb|ABC19670.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica
           ATCC 39073]
          Length = 385

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 82/284 (28%), Positives = 136/284 (47%), Gaps = 27/284 (9%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMI--SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           YG  ++   + L    +FLS I    + A ++ A+   S +++D    Q+   K    R 
Sbjct: 5   YGPRFLAAGVFL---FIFLSFIKPGRAAAPDIQAE---SYVLMDFRTGQVLMAKNPHERR 58

Query: 77  P-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           P A  TK+ T  +  E     + +LN Q+  SK AA    S +YL+E    T E+ + AL
Sbjct: 59  PQAITTKITTAILALE-----RGNLNDQVIASKNAAETPESSIYLQEGETLTLEELLYAL 113

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + RSAND + A  E I GS + FA +M+ K ++IG ++T Y N  GL   +  ++A D A
Sbjct: 114 LLRSANDAAVAIAEHIGGSVENFARMMNAKVQEIGARDTHYVNPHGLTAPDHYSSAYDLA 173

Query: 196 ILGILLRKNFPQYYKYFSIRK------FRYRNRIITNHNKLLNKM---HNIDGIKTGYTR 246
           ++G     N P++ +  + R+       +   R++ N N+LL         DG+K GYT 
Sbjct: 174 LIGRYAMMN-PKFREIVATRQRIIPWAGKPWPRLLINENRLLWGYYAYPGADGVKNGYTT 232

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            +G  +V S    +  ++AVVM  P      ++   ++      
Sbjct: 233 PAGQVLVASATRDNWRLIAVVMKSPNM---YRETSAILDYGFNN 273


>gi|253682095|ref|ZP_04862892.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum D
           str. 1873]
 gi|253561807|gb|EES91259.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum D
           str. 1873]
          Length = 412

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 77/286 (26%), Positives = 130/286 (45%), Gaps = 24/286 (8%)

Query: 47  ELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
            +   P  S+   +++D N  Q+   K  D    PAS TK+MT  +  E       +LN 
Sbjct: 24  AIDTPPTASADGVVLMDKNTGQILYSKNLDTQYPPASTTKIMTALLTLE-----NSNLND 78

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + V K A   + SK+YL E    T +  + AL+ +SAND + A  E +SGS K+F  LM
Sbjct: 79  VVTVGKNAVNVDGSKVYLFEGEKLTIKDLLHALLLQSANDSAIALSEHVSGSTKEFVNLM 138

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-- 220
           + +AK++G ++T + N  GL+D    TTARD  ++   L K   ++ +  +   +     
Sbjct: 139 NKRAKELGCKHTNFVNPHGLYDDKHRTTARDLGLILRELSK-HDEFKEIATTSMYYINPT 197

Query: 221 -----NRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
                 R I N +KL+ K         +G KTGYT  S  + V +    +  ++A+++  
Sbjct: 198 NKEAKKRPIWNKDKLVQKKSKYYYEGCEGGKTGYTIQSKHSFVATATRNNKSLIAILLH- 256

Query: 271 PTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIK 316
                     ++L        TL+   T +   L +  + K+  + 
Sbjct: 257 DQKHTYWNDVIKLFDYGFNNYTLETLYT-KGQILCNYKVTKNFKVP 301


>gi|289436027|ref|YP_003465899.1| hypothetical protein lse_2666 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289172271|emb|CBH28817.1| unnamed protein product [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 445

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 148/348 (42%), Gaps = 39/348 (11%)

Query: 25  QRNIQLMGKILFLSIIMIS----MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PAS 79
           +  I +M   L +S  ++S     A+E       ++I I+ +  ++   K  +     AS
Sbjct: 7   KTGIAIMAVSLAVSGFLVSPNIAQAAEAPTVNANAAIAIEESTGKILYSKDADKLMGIAS 66

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILAL 135
           +TKMM  Y++ E +   KL  + ++ +S+ A       + S + L+    +T ++   A+
Sbjct: 67  MTKMMDEYLLLEAINDGKLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAM 126

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------- 186
              SAN  + A  E I+GSEK+F  +M+ KA+++ +    + NA+GL++++         
Sbjct: 127 AIYSANGAAIAISEKIAGSEKEFVAMMNKKAEELKLGEHQFVNATGLNNEDLKGGQQVGG 186

Query: 187 ----QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM--- 234
                  TAR  A L   L  ++P+  K  S  K  +R        +TN N LL  +   
Sbjct: 187 PKDENKMTARGMAKLAKHLIDDYPEVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYG 246

Query: 235 -HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM------PTSQERDQKALELITSF 287
              +DG+KTG T  +G  +  +       ++ VV+          +  R  +  +++   
Sbjct: 247 RKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHANGGGEGEHTSARFDETNKMLDYS 306

Query: 288 LEKKTLKHQQT--HRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAH 333
                +K  Q    +  + S+ ++ K         T  + K +  K  
Sbjct: 307 FNNFKVKEVQKAGAKVKDPSTIAVDKGKEDTVGLVTKDEVKLVVPKNG 354


>gi|168179469|ref|ZP_02614133.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum NCTC 2916]
 gi|182669511|gb|EDT81487.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum NCTC 2916]
          Length = 415

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 80/306 (26%), Positives = 141/306 (46%), Gaps = 27/306 (8%)

Query: 29  QLMGKILFLSIIMISMASELHAKP--KYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           +++  IL  S+   ++A    +KP  K ++   +++D    ++   K  D+P  PAS TK
Sbjct: 7   KILCSILLFSLFFSNVALAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYPPASTTK 66

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT  +  E     + +L+  + + +       SK+Y+ E         +  L+  SAND
Sbjct: 67  IMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLLLASAND 121

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E++SGS + F+  M+ +AK++G  NT + N SGL++    T+ARD AI+   L 
Sbjct: 122 CAEALAEYLSGSLENFSKDMNKRAKELGCTNTNFVNPSGLYNDKHRTSARDLAIIMNELV 181

Query: 203 KNFPQYYKYFSIRKFRYR-------NRIITNHNKLLNK-----MHNIDGIKTGYTRNSGF 250
           K  P+Y K  +   +           R + N NKL+ K         +G KTGYT  S  
Sbjct: 182 KQ-PEYSKIATTLSYNIPPTNKSKEKRPLWNENKLIQKHSNFYYKGCEGGKTGYTVQSDH 240

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLK 310
           + V S+   +  I+ V +     +     +++L        TL     + KD+  +T   
Sbjct: 241 SYVASVNKNNHRII-VALVHDKEKNFFDDSVKLFNYGFNNFTL--DLLYPKDSYVTTYTN 297

Query: 311 KSLMIK 316
            +L + 
Sbjct: 298 DNLKVP 303


>gi|308171901|ref|YP_003918606.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens DSM
           7]
 gi|307604765|emb|CBI41136.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Bacillus amyloliquefaciens DSM 7]
 gi|328551709|gb|AEB22201.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens
           TA208]
          Length = 443

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 140/307 (45%), Gaps = 39/307 (12%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPK---------YSSIVIDVNKNQMTGFKQD 72
           + I +  Q++  ++ L++          A+            ++I+I+ +  ++   K  
Sbjct: 1   MNITKWKQMLVSLVVLALTATCFVPMSKAEAAGNDPIDVNASAAIMIEASSGKILYSKNA 60

Query: 73  EPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKTAATQNPSKLYLKEKTYFT 127
           + R P AS+TKMMT Y++ E ++  K+  +        V + +   + S + L++   +T
Sbjct: 61  DKRLPIASMTKMMTEYLLLEAIKEGKVKWDQTYTPDDYVYEISQDNSLSNVPLRKDGKYT 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
            ++   A+   SAN  + A  E ++G+E KF   M+ KAK++GM N  +KN++GL +++ 
Sbjct: 121 VKELYQAMAIYSANGAAIAVAEILAGTETKFVAKMNAKAKELGMTNYDFKNSTGLVNEDL 180

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHN 228
                           +A+D A+L   L  ++P+  K  SI K ++R        + N N
Sbjct: 181 HGKQPQGEGVKEESEVSAKDMALLADRLITDYPEVLKTTSIAKTKFRAGTDDEMDMPNWN 240

Query: 229 KLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS--QERDQKALE 282
            +L         +DG+KTG T ++G    ++ +     ++ VV+    +    R  +  +
Sbjct: 241 FMLKGLVSEYPGVDGLKTGSTDSAGSCFTSTAQRNGMRVITVVLNAKGNLHTGRFDETKK 300

Query: 283 LITSFLE 289
           ++     
Sbjct: 301 MLDYAFN 307


>gi|154502526|ref|ZP_02039586.1| hypothetical protein RUMGNA_00339 [Ruminococcus gnavus ATCC 29149]
 gi|153796922|gb|EDN79342.1| hypothetical protein RUMGNA_00339 [Ruminococcus gnavus ATCC 29149]
          Length = 423

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 64/308 (20%), Positives = 128/308 (41%), Gaps = 29/308 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++++D +  ++   K  E  R  AS TK+MT  +  E     +   +  + VS  AA
Sbjct: 56  ARSAVLMDADSGRILFAKNAETERPMASTTKIMTCILALE-----RADPDESVSVSANAA 110

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            Q   +L   E   F  +  + +L+  S ND +    E ++GS ++FA  M+ KA+++G+
Sbjct: 111 AQPRVRLGTVEGQKFKLKDLLYSLMLESHNDTAVMLAEHLAGSVEQFADEMNQKARELGL 170

Query: 172 QNTIYKNASGLHDKN----QITTARDQAILGILLRKNFP---QYYKYFSIRKFRYRNRII 224
            +T +   +GL   +      TTA + A +        P   ++ +   +  +++ +   
Sbjct: 171 SHTHFVTPNGLDGADDGGSHRTTAEELARIMRYCVMESPKRKEFLEITGVSSYQFSDLEQ 230

Query: 225 T------NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-- 276
           T      NHN  L  M      KTG+T  +G+  V +L+ +    +  ++       R  
Sbjct: 231 TQTYSCINHNAFLTMMEGAVSGKTGFTGEAGYCYVGALKREKRTFIVALLACGWPNNRSY 290

Query: 277 -DQKALELITSF---LEKKTLK----HQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
             +   +L+       E +++K      +    D +  ++ K++    +     S    +
Sbjct: 291 KWEDTKKLMEYGLEHFEYQSMKGAGQKFKIRVTDGIPDSNQKEAYTYAEALSEQSNLSFL 350

Query: 329 DAKAHSTQ 336
            A   S Q
Sbjct: 351 LADWESVQ 358


>gi|302392427|ref|YP_003828247.1| serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum
           DSM 5501]
 gi|302204504|gb|ADL13182.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum
           DSM 5501]
          Length = 383

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 80/256 (31%), Positives = 127/256 (49%), Gaps = 19/256 (7%)

Query: 45  ASELHAKP---KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           A  + AKP     S+IV+DV   ++   K   E R PAS TK+MT  +  E       +L
Sbjct: 23  ADIVSAKPDITARSAIVVDVKTGEVLYAKNHHERRPPASTTKIMTGILAIE-----NGNL 77

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
           +T++ VS  AA    S ++L        E+ +  L+  S ND + A  E I GS + FA 
Sbjct: 78  DTEVTVSDRAAYTGGSSIWLTSGETLKLEELLYGLLLNSGNDAAVAIAEHIGGSVEGFAW 137

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN------FPQYYKYFSI 214
           +M+ KA++IG  NT ++N +GL     +TTA D A++     +N           K  S 
Sbjct: 138 MMNRKAREIGALNTTFQNPNGLPQNGHLTTAYDLALITRYALQNDTFAKIVRTVRKTISW 197

Query: 215 RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
               Y  R + N N+LL K   +DG+KTGYT  +G  +V++    +  +V+VV+    S 
Sbjct: 198 EGHEY-GRSLLNTNRLLRKFDKVDGVKTGYTDAAGRCLVSAASADNRQVVSVVL---KSG 253

Query: 275 ERDQKALELITSFLEK 290
           +    +++L+   L+ 
Sbjct: 254 QMWHDSIKLLNYGLDN 269


>gi|229160966|ref|ZP_04288955.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus R309803]
 gi|228622534|gb|EEK79371.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus R309803]
          Length = 317

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 72/259 (27%), Positives = 131/259 (50%), Gaps = 18/259 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E++AK   ++IVID +   +      +E   PAS++KMMT Y++ E + + K+    
Sbjct: 59  IPPEINAK---AAIVIDASDGDVIYQNNENEAFAPASMSKMMTAYLLLESVHNGKVRWED 115

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +S  AA    +++ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM
Sbjct: 116 PVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFVQLM 175

Query: 163 SNKAKKIGM-QNTIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRK-- 216
           + KAK++ M +   + NASGL + +      TA D A L   L K++P+  +   +R+  
Sbjct: 176 NAKAKQLEMSEYAKFANASGLQEPDGSETKMTAADVAKLAYNLIKDYPEILEVTHLRQSQ 235

Query: 217 -------FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
                      N ++  +NK L  +  +DG+KTG+T ++G+    + +  D  I+ VVMG
Sbjct: 236 LAFNNTTVTNTNEMLNENNKSL-HIEGMDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMG 294

Query: 270 MPTSQERDQKALELITSFL 288
                +R  +  +L+T   
Sbjct: 295 TSGKAKRFTETNKLMTYGF 313


>gi|157692820|ref|YP_001487282.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus
           SAFR-032]
 gi|157681578|gb|ABV62722.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus
           SAFR-032]
          Length = 385

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 78/270 (28%), Positives = 122/270 (45%), Gaps = 13/270 (4%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I+ID    ++   K   E R  AS+TK+MT  +  E  +     +   + VSK A 
Sbjct: 36  ARSAILIDGQSGRVLFGKDEHEKRRIASITKIMTAVLAIESGK-----MKDTVKVSKRAI 90

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S +YLKE    + E     L+ RS ND + A  E + GS + F  +M+ KA ++GM
Sbjct: 91  QAEGSSIYLKEGQKVSLEDLTYGLMLRSGNDAAVAIAEHVGGSLEGFIFMMNQKASELGM 150

Query: 172 QNTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR--NRIITNHN 228
           +NT ++N  GL D KN  ++A D AIL     +   QY K      ++ +       N N
Sbjct: 151 ENTNFQNPHGLDDHKNHYSSAYDMAILTRYAME-HKQYQKIAGTTFYKAKTMEGYWKNKN 209

Query: 229 KLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           KLL        G KTGYT+ +   +V++    +  ++AV +  P   +      E     
Sbjct: 210 KLLTGLYQYSTGGKTGYTKLAKRTLVSTAAKGNAALIAVTINAPDDWKDHISMFEYAFDH 269

Query: 288 LEKKTLKHQQTHRKDNLSSTSLKKSLMIKK 317
            +   L  +   R  +L  T  +K   IK+
Sbjct: 270 YKTYVLAEKG--RLASLKGTFYEKKAFIKR 297


>gi|332654087|ref|ZP_08419831.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium
           D16]
 gi|332517173|gb|EGJ46778.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium
           D16]
          Length = 453

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 77/334 (23%), Positives = 145/334 (43%), Gaps = 33/334 (9%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGF-KQDEPRYPASLT 81
           R   L+  +  ++ +++   S     P++   ++I++D N +++       +  YPAS+T
Sbjct: 5   RLFALVLVVSIMTTLLLPFQSLALEPPEFHGKNAILVDANYDEVLYEVGGHDKVYPASIT 64

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT--QNPSKLYLKEKTYFTTEQGILALITRS 139
           K+MT  +  E ++S KL   TQ+  S TAAT  +  S   +K     T EQ +  L+  S
Sbjct: 65  KVMTALLTLEAIESGKLTAQTQVTASATAATIPEGSSTANIKAGEVLTVEQLLYCLLLPS 124

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AN+ +    E + G    F  +M++KAK++G +NT + N  G HD +  TT  D  +   
Sbjct: 125 ANEAAQILAETVGGDIDTFVGMMNDKAKELGCENTHFANPHGFHDPDHYTTPYDITLFMK 184

Query: 200 LLRKNFPQYYKYFSIRKFRYR------NRIITNHNKLL--NKMHNI-----DGIKTGYTR 246
              + +  + K  +   +          R + N N L               G KTG T 
Sbjct: 185 AAME-YDLFQKIVTSPNYTIPATNLSEQRTVRNTNALTSNWTYTGYLYTPGTGGKTGSTD 243

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTS---------QERDQKALELITSFLE--KKTLKH 295
            +G  +V + +  D  +++VVMG P             +    ++L+    E  ++T+  
Sbjct: 244 EAGKCLVETAKKGDTYLISVVMGEPEKVTLADGTEVVAQFYDTIQLLNWGFENFQRTVIS 303

Query: 296 Q--QTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
           +  +   K N++ ++    +M++          K
Sbjct: 304 EDSEVVAKVNVTLSTQSDQVMVRPSGSIARTLPK 337


>gi|227822156|ref|YP_002826127.1| penicillin binding protein [Sinorhizobium fredii NGR234]
 gi|227341156|gb|ACP25374.1| penicillin binding protein [Sinorhizobium fredii NGR234]
          Length = 384

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 14/291 (4%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS--IVIDVNKNQMTGFK-QDEPRYPASLTK 82
           +   ++G  +  +I+    A++  A    +    +ID     +   + +DEP  PASL K
Sbjct: 4   KWFAIVG--ILAAIVQGEAAAQTPAFDTKAKQIYLIDAETGTVLFARGEDEPVPPASLAK 61

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALIT 137
           +M + ++FE L+  +L      PVS+ A          S ++   K+       I     
Sbjct: 62  LMAMEVVFEALEKGELTQEAVFPVSEHAWRTGGAPSGTSTMFAAIKSQVRVADLIQGATV 121

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           + AND      E ++GSE  FA  M+ +A+ +GM    +KNA+GL D     T R+   L
Sbjct: 122 QLANDACIILAEGMAGSEAAFAQRMNARARDLGMPVATFKNATGLPDPGNRVTMRELVTL 181

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              LR+    +Y+ ++  +F +   +  N N L+     +DG+ TG+    GF++  S++
Sbjct: 182 SRHLREAHANFYRLYAQPEFEWNKILQRNKNPLIAANVGVDGLATGFAEGFGFSLAASMQ 241

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITS----FLEKKTLKHQQTHRKDNL 304
             D  +   + G+ T +ER +++  ++      F +++   + +T  + ++
Sbjct: 242 RGDRRVYLAMGGLETDKERTEESRRVLDWAMTNFEKRRIFANGETIGEASI 292


>gi|258514292|ref|YP_003190514.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257777997|gb|ACV61891.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 409

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 134/300 (44%), Gaps = 18/300 (6%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASL 80
           +  +  I ++  I  L+      A +       +++++D    Q+   K   E  YPAS 
Sbjct: 1   MLKKHIIGIIFLIYLLAFAAPVFADDAPDITGMTAVLMDAQNMQILYNKDMQERMYPAST 60

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           TK++T  I  E     K  ++  IPVS  AA    + + L+E    T    + AL+  S+
Sbjct: 61  TKILTGIIAIE-----KGKMDDLIPVSWEAANTEGTNIGLQEGEKLTLRDLLYALLLSSS 115

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND + A  E    S   FA++M+ KAK+IG  ++ + N  GL D++  TTA D A++   
Sbjct: 116 NDAAEAIAEHYGKSADNFAVMMNQKAKEIGAVHSHFTNPHGLPDEDHYTTAYDLALIARY 175

Query: 201 LRKNFPQYYKYFSIRKFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
             +N  ++ +    ++           + + NHNKLL++     GIKTGYT  +G  I  
Sbjct: 176 AMQN-DKFREIVREKEITIARVDPEGQKYMVNHNKLLSRYEGAIGIKTGYTVAAGQCIAA 234

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK----KTLKHQQTHRKDNLSSTSLK 310
            ++  D  ++AVV+      +       L             +K  Q   +  +S+ SLK
Sbjct: 235 EVKRDDRELIAVVLKSE-GNDLWTDTENLFNYGFNSFRNIYLVKRGQVMGQAEVSNGSLK 293


>gi|294011645|ref|YP_003545105.1| D-alanyl-D-alanine carboxypeptidase [Sphingobium japonicum UT26S]
 gi|292674975|dbj|BAI96493.1| D-alanyl-D-alanine carboxypeptidase [Sphingobium japonicum UT26S]
          Length = 387

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 133/295 (45%), Gaps = 19/295 (6%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           ++++I  +  +  LS  + + A    ++   + +  D++   +   K  D    PAS+ K
Sbjct: 1   MKKSIAALLFVGLLSTPLTAAAPPYSSEAPIAYM-KDLSSGAVLYNKGGDTRIPPASMAK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-----NPSKLYLKEKTYFTTEQGILALIT 137
           MMT ++ F  +Q   L L  +  V      Q       S ++L      + E  +  ++T
Sbjct: 60  MMTAHVAFRLIQKGDLKLEQKFTVRPETWQQWHGPQAGSTMFLSPGEQVSVENLLHGIVT 119

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-QITTARDQAI 196
            S ND      E I+G+E+ F  LM+ +AK++G++N+ +  ++G  D+     TA D A 
Sbjct: 120 LSGNDACVVLAEGIAGTEQAFVALMNQEAKRLGLKNSNFGTSNGWPDEGVTYVTAADLAA 179

Query: 197 LGILLRKNFPQ-YYKYFSIRKFRYR------NRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
           L     +  P  Y K+++ R F +       +    N N +L K+   DG+KTG+T+ +G
Sbjct: 180 LAEATIEETPNLYKKFYATRSFTWGKTMGGADIEQGNRNPILGKVAGADGLKTGHTQEAG 239

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE----KKTLKHQQTHR 300
           F    S   +   +V VV G+ +  +R  +++  +         +   K  QT  
Sbjct: 240 FGFTGSAEQEGRRLVMVVAGLTSFNQRIAESVRFMDWGFRAWKAQPLFKKGQTVE 294


>gi|170755725|ref|YP_001782612.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum B1 str. Okra]
 gi|169120937|gb|ACA44773.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum B1 str. Okra]
          Length = 415

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 80/306 (26%), Positives = 139/306 (45%), Gaps = 27/306 (8%)

Query: 29  QLMGKILFLSIIMISMASELHAKP--KYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           +++  IL  S+   ++A    +KP  K ++   +++D    ++   K  D+P  PAS TK
Sbjct: 7   KILCSILLFSLFFSNVALAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYPPASTTK 66

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT  +  E     + +L+  + + +       SK+Y+ E         +  L+  SAND
Sbjct: 67  IMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLLLASAND 121

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E++SGS   F   M+ +AK++G  NT + N SGL++    T+ARD AI+   L 
Sbjct: 122 CAEALAEYLSGSLDNFPKDMNKRAKELGCTNTNFVNPSGLYNDKHRTSARDLAIIMNELV 181

Query: 203 KNFPQYYKYFSIRKFRYR-------NRIITNHNKLLNK-----MHNIDGIKTGYTRNSGF 250
           K  P+Y K  +   +           R + N NKL+ K         +G KTGYT  S  
Sbjct: 182 KQ-PEYSKIATTLSYNIPPTNKSKEKRPLWNENKLIQKHSNFYYKGCEGGKTGYTVQSDH 240

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLK 310
           + V S+   +  I+ V +     +     +++L        TL     + KD+  +T   
Sbjct: 241 SYVASVNKNNHRII-VALVHDKEKNFFDDSVKLFNYGFNNFTL--DLLYPKDSYVTTYTN 297

Query: 311 KSLMIK 316
            +L + 
Sbjct: 298 DNLKVP 303


>gi|312622483|ref|YP_004024096.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202950|gb|ADQ46277.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 374

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 75/278 (26%), Positives = 121/278 (43%), Gaps = 21/278 (7%)

Query: 31  MGKILFLSIIMISMASELHAKPKY--------SSIVIDVNKNQMTGFKQ-DEPRYPASLT 81
           +  ++F  II  +     +A  K         S+I I+    ++   K  D     AS T
Sbjct: 5   VFVLIFALIITTAFGKICYANEKKNLPQLSSKSAIAIEWVTGKILFEKNKDLKLPMASTT 64

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  ++ E        +N +I +   A     S +YL++         +  L+  S N
Sbjct: 65  KIMTAILVLENCD-----VNKEIEIPPQAVGVPGSSMYLEKGEKLKIIDLLYGLMLSSGN 119

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D + A     +G  K+F  LM+ KAK +G+ NT++ +  GL      TTA D A L    
Sbjct: 120 DAAVALAIATAGDVKRFVKLMNKKAKDLGLSNTVFSSPHGLEQGQHYTTAHDLAKLTAYA 179

Query: 202 RKNFPQYYKYFSIR------KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
            +N P + +    +        R  NRI+ N NK+L      DG+KTG+T+ +G  +VTS
Sbjct: 180 MRN-PIFRQIVKTKDIEVPWTTRPYNRILRNKNKMLRLYPGADGVKTGFTKKAGRCLVTS 238

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
           +   D  ++ VV+  P      QK L    +  +   L
Sbjct: 239 VCRDDFRVICVVLNAPDMWNDTQKILNYCYNNFKVVKL 276


>gi|311028943|ref|ZP_07707033.1| D-alanyl-D-alanine carboxypeptidase dacA [Bacillus sp. m3-13]
          Length = 459

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 81/359 (22%), Positives = 158/359 (44%), Gaps = 55/359 (15%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP---------KYSSIVIDVNKNQMTGFKQ-DE 73
           ++R+ + +   L +  +M+S+     A+            ++I+I+ +  ++   K  DE
Sbjct: 1   MKRSFKQLFVGLLVLTLMVSIFPGKSAQAEENDFLNINAKAAILIEFSTGKIIYQKNVDE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-----NPSKLYLKEKTYFTT 128
               AS+TKMMT Y++ E ++  KL  + ++ +S  A          S + ++++  +T 
Sbjct: 61  ALPVASMTKMMTEYLLLEAIEDGKLDWSKEVILSDYAQAISQKYPELSNVPMRKQEPYTI 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-- 186
           ++   A+   SAN  + A  E I+GSE KF  +M+ KA++IG++N  + N++GL++++  
Sbjct: 121 KELYEAMAIYSANGATIALAEAIAGSETKFVEMMNAKAEEIGLENYNFVNSTGLNNEDLA 180

Query: 187 ----------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----IT 225
                              +A+D A L   L  ++P+     SI    +R        + 
Sbjct: 181 VGGVPMHPEGTDANEETTLSAKDTARLAHRLLTDYPEILDTASIPFKVFREGTPDAIDMP 240

Query: 226 NHNKLLN------KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ----- 274
           N NK+L       +   IDG+KTG T  +GFN   +       +++VVM     +     
Sbjct: 241 NWNKMLFTEELKVQFEGIDGLKTGSTDAAGFNFTGTAERDGMRVISVVMNTTNDEGVSTE 300

Query: 275 -ERDQKALELITSFLEKKTLK-----HQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
             R  +  +L+T      +++       Q   +  L  T  K+  +  + K  +    K
Sbjct: 301 ISRFIETKKLMTHAFGSYSVEELFPGEYQMEGESILPVTKGKEDSVEIQTKEPFKTLVK 359


>gi|28211671|ref|NP_782615.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88]
 gi|28204113|gb|AAO36552.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88]
          Length = 419

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 79/317 (24%), Positives = 147/317 (46%), Gaps = 28/317 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMA---SELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRY 76
           I +   L   I FLS + I+ A   ++    P  S+   I++D    ++   K  ++P  
Sbjct: 7   IMKKYILTFLIFFLSFVCINSATINAKTSKPPSVSADGAILMDAKTGKVLYEKNINKPYP 66

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS TK+MT  +  E       +L+ ++ V K     + SK+++ E      +  + AL+
Sbjct: 67  PASTTKIMTALLTLE-----NCNLDDEVVVGKKPPLADGSKIFIHEGEKLKVKDLLYALL 121

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             SAND + A  E I GS   F+ LM+ +AK++G  NT + N +GL++    TTA+D A+
Sbjct: 122 LESANDAAEALAEHIGGSINDFSKLMNKRAKELGCTNTNFVNPNGLYNAKHRTTAQDLAL 181

Query: 197 LGILLRKNFPQYYKYFSIRKFRY-------RNRIITNHNKLLNKM-----HNIDGIKTGY 244
           +   + + +  Y K  +   ++        + R + N NKL+ +         +G KTGY
Sbjct: 182 IMKEVSQ-YEDYRKISNTITYKIKPTNKSKKERPLWNKNKLVQQNSKYYFKGCNGGKTGY 240

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNL 304
           T  S  + V S    D  ++ VV+   + +   + ++ L+        L   + + + ++
Sbjct: 241 TTQSQHSYVVSANRGDFQLI-VVLIHDSKKTFFEDSVNLLNYGFNNFELI--KMYSRGDI 297

Query: 305 SSTSLKKSLMIKKLKRT 321
            +   +K L +  + R 
Sbjct: 298 VTAYNEKDLSLNLIARD 314


>gi|153938417|ref|YP_001392255.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum F str. Langeland]
 gi|152934313|gb|ABS39811.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum F str. Langeland]
          Length = 415

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 80/306 (26%), Positives = 140/306 (45%), Gaps = 27/306 (8%)

Query: 29  QLMGKILFLSIIMISMASELHAKP--KYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           +++  IL  S+   ++A    +KP  K ++   +++D    ++   K  D+P  PAS TK
Sbjct: 7   KILCSILLFSLFFSNVAWAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYPPASTTK 66

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT  +  E     + +L+  + + +       SK+Y+ E         +  L+  SAND
Sbjct: 67  IMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLLLASAND 121

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E++SGS   F+  M+ +AK++G  NT + N SGL++    T+ARD AI+   L 
Sbjct: 122 CAEALAEYLSGSLDNFSKDMNKRAKELGCTNTNFVNPSGLYNDKHRTSARDLAIIMNELV 181

Query: 203 KNFPQYYKYFSIRKFRYR-------NRIITNHNKLLNK-----MHNIDGIKTGYTRNSGF 250
           K  P+Y K  +   +           R + N NKL+ K         +G KTGYT  S  
Sbjct: 182 KQ-PEYSKIATTLSYNIPPTNKSKEKRPLWNENKLIQKHSNFYYKGCEGGKTGYTVQSDH 240

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLK 310
           + V S+   +  I+ V +     +     +++L        TL     + KD+  +T   
Sbjct: 241 SYVASVNKDNHRII-VALVHDKEKNFFDDSVKLFNYGFNNFTL--DLLYPKDSYVTTYTN 297

Query: 311 KSLMIK 316
            +L + 
Sbjct: 298 DNLKVP 303


>gi|291087166|ref|ZP_06345583.2| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
 gi|291075839|gb|EFE13203.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
          Length = 464

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 72/251 (28%), Positives = 119/251 (47%), Gaps = 25/251 (9%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++++ D   +++   K  D   YPAS+TK+MT  ++ E+       L+  +  S++A T 
Sbjct: 84  AAVLYDATHDRVLYEKNADAQHYPASITKLMTALLVLEHC-----SLSDTVTFSQSAVTN 138

Query: 114 NPS---KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             S    L +K    FT EQ +  L+ +SAN+++    E +SGS   FA LM+ KA  +G
Sbjct: 139 LESGAVTLGVKAGDQFTVEQCLYGLLLKSANEIANGLAEHVSGSVSSFADLMNQKAASLG 198

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKN-------------FPQYYKYFSIRKF 217
              T + N +GL+D N  TTARD A++     +N             FP      S+RK 
Sbjct: 199 CTGTHFVNPNGLNDPNHYTTARDMALIAEAAFENPTLCRIASTVNYDFPATASVPSVRKL 258

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
              ++++  +NK       I G KTGYT  +G  +VT +      ++AV++   + Q   
Sbjct: 259 TMGHKMVNPNNK-EYYYEGIVGGKTGYTSLAGNTLVTCVERNGTRLIAVIL--KSRQTHY 315

Query: 278 QKALELITSFL 288
                L+    
Sbjct: 316 ADTKALLDYGF 326


>gi|153855278|ref|ZP_01996444.1| hypothetical protein DORLON_02458 [Dorea longicatena DSM 13814]
 gi|149752277|gb|EDM62208.1| hypothetical protein DORLON_02458 [Dorea longicatena DSM 13814]
          Length = 452

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 137/300 (45%), Gaps = 36/300 (12%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
            +EL+A+   S++++D +  ++   K  D  R  AS TK+MT  +  E L+    H +  
Sbjct: 80  PAELYAR---SAVLMDADSGRVLFGKDTDVVRPMASTTKIMTCILALESLRE---HPDQT 133

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           I VS  AA+Q    L +++   F  +  + +L+  S ND + A  E I+GS ++FA  M+
Sbjct: 134 IEVSDQAASQPKVHLGMQKGEVFYIKDLLYSLMLESHNDSAVAVAEGIAGSVEEFAKEMN 193

Query: 164 NKAKKIGMQNTIYKNASGLHDKN----QITTARDQAILGILLRKNFPQ---YYKYFSIRK 216
            KA +IG +NT +   +GL  ++      TTA D A +         +   + +    ++
Sbjct: 194 AKAAEIGCKNTHFITPNGLDAEDEGGVHSTTAEDLAKIMRYCIMTSGEKETFLEVTRTKE 253

Query: 217 FRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM-- 268
           +++      R     NHN  L+ M      KTG+T ++G+  V SLR+ D   +  ++  
Sbjct: 254 YQFQDADRKRTFSCHNHNAFLDMMDGALSGKTGFTADAGYCYVGSLRWDDRTFIVALLAC 313

Query: 269 GMPTSQE-RDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
           G P ++  + +   +L+   LE    +              + K + I ++K       K
Sbjct: 314 GWPNNKGYKWKDTRKLMEYGLEHYQYR-------------DIDKKMQIPEIKVAGGVDDK 360


>gi|110633932|ref|YP_674140.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium
           sp. BNC1]
 gi|110284916|gb|ABG62975.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Chelativorans
           sp. BNC1]
          Length = 382

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 65/257 (25%), Positives = 123/257 (47%), Gaps = 9/257 (3%)

Query: 39  IIMISMASELHAKPKYS-SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSK 96
            + +  A     + K + + ++D     +   K  DEP  PASL K+MT  ++   L++ 
Sbjct: 15  FVPLPFARAQSFETKAAQAFLLDGETGAILYSKNADEPFPPASLAKLMTAELLLNALKTG 74

Query: 97  KLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
           ++ +  +  VS+ A          + ++    +    E  +  +I + AND      E +
Sbjct: 75  RISMQREFEVSEHAWRTGGAPSGTATMFAAVNSRVPIEALLQGIIVQQANDGCIILAEGM 134

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           +GSE  FA LM+ +A+ +G+  +++ N +GL  + Q  T R+ A+L   L + +P+YY+Y
Sbjct: 135 AGSENAFARLMTERARALGLTRSVFVNPTGLPAEGQQVTVREIALLSRHLWREYPEYYRY 194

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           F    F +    I   N++L      DG+  G+T   G+ I  S+      + AV+ G+P
Sbjct: 195 FGQEDFEWN--RIRQRNRVLRLGTGADGLALGFTEGQGYAIAASMERNGKRLFAVLAGIP 252

Query: 272 TSQERDQKALELITSFL 288
             QER ++  +++    
Sbjct: 253 EEQERPEETRKMLEWGF 269


>gi|254824881|ref|ZP_05229882.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           J1-194]
 gi|293594121|gb|EFG01882.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           J1-194]
          Length = 445

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 145/348 (41%), Gaps = 39/348 (11%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEPRY-PAS 79
           +  I +M   L +S  ++S  +   A+       ++I I+ +  ++   K  +     AS
Sbjct: 7   KTGIVIMAASLAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIAS 66

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILAL 135
           +TKMM  Y++ E +   ++  + ++ +S+ A       + S + L+    +T ++   A+
Sbjct: 67  MTKMMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAM 126

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------- 186
              SAN  + A  E I+GSEK+F   M+ KA ++ +    + NA+GL++++         
Sbjct: 127 AIYSANGAAIAISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGG 186

Query: 187 ----QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM--- 234
                  TAR  A L   L  ++P   K  S  K  +R        +TN N LL  +   
Sbjct: 187 PKDENKMTARGMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYG 246

Query: 235 -HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM----GMPTSQ--ERDQKALELITSF 287
              +DG+KTG T  +G  +  +       ++ VV+    G P      R  +  +++   
Sbjct: 247 RKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYA 306

Query: 288 LEKKTLKHQQT--HRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAH 333
                +K  Q    +  N S+ ++ K         T    K +  K  
Sbjct: 307 FNNFKVKEVQKAGSKVKNPSTIAVDKGKEDTVGLVTKDAVKLVVPKNG 354


>gi|254851941|ref|ZP_05241289.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           R2-503]
 gi|254994152|ref|ZP_05276342.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           J2-064]
 gi|255520022|ref|ZP_05387259.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           J1-175]
 gi|300763487|ref|ZP_07073485.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           N1-017]
 gi|258605239|gb|EEW17847.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           R2-503]
 gi|300515764|gb|EFK42813.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           N1-017]
          Length = 445

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 145/348 (41%), Gaps = 39/348 (11%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEPRY-PAS 79
           +  I +M   L +S  ++S  +   A+       ++I I+ +  ++   K  +     AS
Sbjct: 7   KTGIVIMAASLAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIAS 66

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILAL 135
           +TKMM  Y++ E +   ++  + ++ +S+ A       + S + L+    +T ++   A+
Sbjct: 67  MTKMMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAM 126

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------- 186
              SAN  + A  E I+GSEK+F   M+ KA ++ +    + NA+GL++++         
Sbjct: 127 AIYSANGAAIAISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGG 186

Query: 187 ----QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM--- 234
                  TAR  A L   L  ++P   K  S  K  +R        +TN N LL  +   
Sbjct: 187 PKDENKMTARGMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYG 246

Query: 235 -HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM----GMPTSQ--ERDQKALELITSF 287
              +DG+KTG T  +G  +  +       ++ VV+    G P      R  +  +++   
Sbjct: 247 RKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYA 306

Query: 288 LEKKTLKHQQT--HRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAH 333
                +K  Q    +  N S+ ++ K         T    K +  K  
Sbjct: 307 FNNFKVKEVQKAGSKVKNPSTIAVDKGKEDTVGLVTKDAVKLVVPKNG 354


>gi|16804791|ref|NP_466276.1| hypothetical protein lmo2754 [Listeria monocytogenes EGD-e]
 gi|224502838|ref|ZP_03671145.1| hypothetical protein LmonFR_09994 [Listeria monocytogenes FSL
           R2-561]
 gi|16412254|emb|CAD00967.1| lmo2754 [Listeria monocytogenes EGD-e]
          Length = 445

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 79/350 (22%), Positives = 146/350 (41%), Gaps = 39/350 (11%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEPRY-PAS 79
           +  I +M   L +S  ++S  +   A+       ++I I+ +  ++   K  +     AS
Sbjct: 7   KTGILIMAASLAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIAS 66

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILAL 135
           +TKMM  Y++ E +   KL  + ++ +S+ A       + S + L+    +T ++   A+
Sbjct: 67  MTKMMDEYLLLEAIDKGKLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAM 126

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------- 186
              SAN  + A  E I+GSEK+F   M+ KA ++ +    + NA+GL++++         
Sbjct: 127 AIYSANGAAIAISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGG 186

Query: 187 ----QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM--- 234
                  TAR  A L   L  ++P   K  S  K  +R        +TN N LL  +   
Sbjct: 187 PKDENKMTARGMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYG 246

Query: 235 -HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM----GMPTSQ--ERDQKALELITSF 287
              +DG+KTG T  +G  +  +       ++ VV+    G P      R  +  +++   
Sbjct: 247 RKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYA 306

Query: 288 LEKKTLKHQQT--HRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
                +K  Q    +  N S+ ++ K         T    K +  K  + 
Sbjct: 307 FNNFKVKEVQKAGSKVKNPSTIAVDKGKEDTVGLVTKDAVKLVVPKNGNA 356


>gi|222529271|ref|YP_002573153.1| serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456118|gb|ACM60380.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 372

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 75/278 (26%), Positives = 121/278 (43%), Gaps = 21/278 (7%)

Query: 31  MGKILFLSIIMISMASELHAKPKY--------SSIVIDVNKNQMTGFKQ-DEPRYPASLT 81
           +  ++F  II  +     +A  K         S+I I+    ++   K  D     AS T
Sbjct: 5   VFVLIFALIITTAFGKICYANEKKNLPQLSSKSAIAIEWVTGKILFEKNKDLKLPMASTT 64

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  ++ E        +N +I +   A     S +YL++         +  L+  S N
Sbjct: 65  KIMTAILVLENCD-----VNKEIEIPPQAVGVPGSSMYLEKGEKLKIIDLLYGLMLSSGN 119

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D + A     +G  K+F  LM+ KAK +G+ NT++ +  GL      TTA D A L    
Sbjct: 120 DAAVALAIATAGDVKRFVKLMNKKAKDLGLSNTVFSSPHGLEQGQHYTTAHDLAKLTAYA 179

Query: 202 RKNFPQYYKYFSIR------KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
            +N P + +    +        R  NRI+ N NK+L      DG+KTG+T+ +G  +VTS
Sbjct: 180 MRN-PIFRQIVKTKDIEVPWTTRPYNRILRNKNKMLRLYPGADGVKTGFTKKAGRCLVTS 238

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
           +   D  ++ VV+  P      QK L    +  +   L
Sbjct: 239 VCRDDFRVICVVLNAPDMWNDTQKILNYCYNNFKVVKL 276


>gi|313635871|gb|EFS01844.1| D-alanyl-D-alanine carboxypeptidase DacA [Listeria seeligeri FSL
           S4-171]
          Length = 445

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 147/348 (42%), Gaps = 39/348 (11%)

Query: 25  QRNIQLMGKILFLSIIMIS----MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PAS 79
           +  I +M   L +S  ++S     A+E       ++I I+ +  ++   K  +     AS
Sbjct: 7   KTGIAIMAASLAVSGFLVSPNIAQAAEAPTVNANAAIAIEESTGKILYSKDADKLMGIAS 66

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILAL 135
           +TKMM  Y++ E +   KL  + ++ +S+ A       + S + L+    +T ++   A+
Sbjct: 67  MTKMMDEYLLLEAINDGKLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAM 126

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------- 186
              SAN  + A  E I+GSEK+F  +M+ KA+++ +    + NA+GL++++         
Sbjct: 127 AIYSANGAAIAISEKIAGSEKEFXAMMNKKAEELKLGEHQFVNATGLNNEDLKGGQQVGG 186

Query: 187 ----QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM--- 234
                  TAR  A L   L  ++P+  K  S  K  +R        +TN N LL  +   
Sbjct: 187 PKDENKMTARGMAKLAKHLIDDYPEVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYG 246

Query: 235 -HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM------PTSQERDQKALELITSF 287
              +DG+KTG T  +G  +  +       ++ VV+          +  R  +  +++   
Sbjct: 247 RKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHANGGGEGEHTSARFDETNKMLDYS 306

Query: 288 LEKKTLKHQQT--HRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAH 333
                +K  Q    +  + S+  + K         T  + K +  K  
Sbjct: 307 FNNFKVKEVQKAGAKVKDPSTIEVDKGKEDTVGLVTKDEVKLVVPKNG 354


>gi|254827320|ref|ZP_05232007.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           N3-165]
 gi|254830810|ref|ZP_05235465.1| hypothetical protein Lmon1_05599 [Listeria monocytogenes 10403S]
 gi|254899789|ref|ZP_05259713.1| hypothetical protein LmonJ_08246 [Listeria monocytogenes J0161]
 gi|254913006|ref|ZP_05263018.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes J2818]
 gi|254937387|ref|ZP_05269084.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes F6900]
 gi|284800360|ref|YP_003412225.1| hypothetical protein LM5578_0105 [Listeria monocytogenes 08-5578]
 gi|284993545|ref|YP_003415313.1| hypothetical protein LM5923_0105 [Listeria monocytogenes 08-5923]
 gi|258599701|gb|EEW13026.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           N3-165]
 gi|258609993|gb|EEW22601.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes F6900]
 gi|284055922|gb|ADB66863.1| hypothetical protein LM5578_0105 [Listeria monocytogenes 08-5578]
 gi|284059012|gb|ADB69951.1| hypothetical protein LM5923_0105 [Listeria monocytogenes 08-5923]
 gi|293591008|gb|EFF99342.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes J2818]
          Length = 445

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 79/350 (22%), Positives = 146/350 (41%), Gaps = 39/350 (11%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEPRY-PAS 79
           +  I +M   L +S  ++S  +   A+       ++I I+ +  ++   K  +     AS
Sbjct: 7   KTGIVIMAASLAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIAS 66

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILAL 135
           +TKMM  Y++ E +   KL  + ++ +S+ A       + S + L+    +T ++   A+
Sbjct: 67  MTKMMDEYLLLEAIDKGKLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAM 126

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------- 186
              SAN  + A  E I+GSEK+F   M+ KA ++ +    + NA+GL++++         
Sbjct: 127 AIYSANGAAIAISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGG 186

Query: 187 ----QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM--- 234
                  TAR  A L   L  ++P   K  S  K  +R        +TN N LL  +   
Sbjct: 187 PKDENKMTARGMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYG 246

Query: 235 -HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM----GMPTSQ--ERDQKALELITSF 287
              +DG+KTG T  +G  +  +       ++ VV+    G P      R  +  +++   
Sbjct: 247 RKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYA 306

Query: 288 LEKKTLKHQQT--HRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
                +K  Q    +  N S+ ++ K         T    K +  K  + 
Sbjct: 307 FNNFKVKEVQKAGSKVKNPSTIAVDKGKEDTVGLVTKDAVKLVVPKNGNA 356


>gi|226225306|ref|YP_002759413.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Listeria monocytogenes Clip81459]
 gi|225877768|emb|CAS06483.1| Putative D-alanyl-D-alanine carboxypeptidase (penicillin-binding
           protein 5) [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|328468231|gb|EGF39237.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes 1816]
          Length = 445

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 145/348 (41%), Gaps = 39/348 (11%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEPRY-PAS 79
           +  I +M   L +S  ++S  +   A+       ++I I+ +  ++   K  +     AS
Sbjct: 7   KTGIVIMAASLAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIAS 66

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILAL 135
           +TKMM  Y++ E +   ++  + ++ +S+ A       + S + L+    +T ++   A+
Sbjct: 67  MTKMMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAM 126

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------- 186
              SAN  + A  E I+GSEK+F   M+ KA ++ +    + NA+GL++++         
Sbjct: 127 AIYSANGAAIAISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGG 186

Query: 187 ----QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM--- 234
                  TAR  A L   L  ++P   K  S  K  +R        +TN N LL  +   
Sbjct: 187 PKDENKMTARGMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYG 246

Query: 235 -HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM----GMPTSQ--ERDQKALELITSF 287
              +DG+KTG T  +G  +  +       ++ VV+    G P      R  +  +++   
Sbjct: 247 RKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYA 306

Query: 288 LEKKTLKHQQT--HRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAH 333
                +K  Q    +  N S+ ++ K         T    K +  K  
Sbjct: 307 FNNFKVKEVQKAGSKVKNPSTIAVDKGKEDTVGLVTKDAVKLVVPKNG 354


>gi|217966043|ref|YP_002351721.1| D-alanyl-D-alanine carboxypeptidase DacA (DD-peptidase)
           (DD-carboxypeptidase) (CPase) (Penicillin-binding
           protein5) (PBP-5) [Listeria monocytogenes HCC23]
 gi|217335313|gb|ACK41107.1| D-alanyl-D-alanine carboxypeptidase DacA (DD-peptidase)
           (DD-carboxypeptidase) (CPase) (Penicillin-binding
           protein5) (PBP-5) [Listeria monocytogenes HCC23]
          Length = 445

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 74/350 (21%), Positives = 146/350 (41%), Gaps = 39/350 (11%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEPRY-PAS 79
           +  I +M   L +S  ++S  +   A+       ++I I+ +  ++   K  +     AS
Sbjct: 7   KTGILIMAASLAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIAS 66

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILAL 135
           +TKMM  Y++ E +   ++  + ++ +S+ A       + S + L+    +T ++   A+
Sbjct: 67  MTKMMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAM 126

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------- 186
              SAN  + A  E I+GSEK+F   M+ KA+++ +    + N++GL++++         
Sbjct: 127 AIYSANGAAIAISEKIAGSEKEFVDAMNKKAEELKLGEHQFVNSTGLNNEDLKGGQQVGG 186

Query: 187 ----QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM--- 234
                  TAR  A L   L  ++P   K  S  K  +R        +TN N LL  +   
Sbjct: 187 PKDENKMTARGMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYG 246

Query: 235 -HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ------ERDQKALELITSF 287
              +DG+KTG T  +G  +  +       ++ VV+             R  +  +++   
Sbjct: 247 RQGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHANGEAPGAHTSARFDETNKMLDYA 306

Query: 288 LEKKTLKHQQT--HRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
                +K  Q    +  N S+ ++ K         T    K +  K  ++
Sbjct: 307 FNNFKVKEVQKAGSKVKNPSTIAVDKGKEDTVGLVTKDAVKLVVPKNDNS 356


>gi|46908941|ref|YP_015330.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|254930973|ref|ZP_05264332.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes
           HPB2262]
 gi|46882214|gb|AAT05507.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|293582519|gb|EFF94551.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes
           HPB2262]
 gi|328469102|gb|EGF40050.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes 220]
 gi|332313185|gb|EGJ26280.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str.
           Scott A]
          Length = 445

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 145/348 (41%), Gaps = 39/348 (11%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEPRY-PAS 79
           +  I +M   L +S  ++S  +   A+       ++I I+ +  ++   K  +     AS
Sbjct: 7   KTGIVIMAASLAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIAS 66

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILAL 135
           +TKMM  Y++ E +   ++  + ++ +S+ A       + S + L+    +T ++   A+
Sbjct: 67  MTKMMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAM 126

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------- 186
              SAN  + A  E I+GSEK+F   M+ KA ++ +    + NA+GL++++         
Sbjct: 127 AIYSANGAAIAISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGG 186

Query: 187 ----QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM--- 234
                  TAR  A L   L  ++P   K  S  K  +R        +TN N LL  +   
Sbjct: 187 PKDENKMTARGMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYG 246

Query: 235 -HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM----GMPTSQ--ERDQKALELITSF 287
              +DG+KTG T  +G  +  +       ++ VV+    G P      R  +  +++   
Sbjct: 247 RKGVDGLKTGTTDYAGMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYA 306

Query: 288 LEKKTLKHQQT--HRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAH 333
                +K  Q    +  N S+ ++ K         T    K +  K  
Sbjct: 307 FNNFKVKEVQKAGSKVKNPSTIAVDKGKEDTVGLVTKDAVKLVVPKNG 354


>gi|312897814|ref|ZP_07757230.1| D-alanyl-D-alanine carboxypeptidase domain protein [Megasphaera
           micronuciformis F0359]
 gi|310621198|gb|EFQ04742.1| D-alanyl-D-alanine carboxypeptidase domain protein [Megasphaera
           micronuciformis F0359]
          Length = 277

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 120/277 (43%), Gaps = 13/277 (4%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTK 82
           +++    +   L  ++ +I  ++ +      ++ +ID +  ++      ++  +PAS TK
Sbjct: 5   LRKGRMALFTALLWAVTVIVASAAVPTTGAEAACLIDADTGRILYQVNPNKWVHPASTTK 64

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           ++T+    +        L+  I +S+ AA   PS L +      T  + +  ++  S ND
Sbjct: 65  IVTMLTALD---KGADKLDQPIHISQYAADTEPSVLGIAPGDKLTLREAMRGMMVVSGND 121

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
           V+ A  E + G+   +A +M+ +A K+G  +T + N +GL      TTA D A +     
Sbjct: 122 VAVAVAETLGGTVGAYADMMNAEAAKLGATHTHFVNPNGLTAPKHYTTAVDMAKIAAYGL 181

Query: 203 KNFPQYYKYFSIRKFRY-----RNRIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSL 256
           K++P++    S+  +       R + +   N+ L       DG+KTGYT  +G  +V S 
Sbjct: 182 KHYPEFKYTVSLPNYTVKYLDGRTKYVETTNRFLTSGYKGADGVKTGYTDAAGVCLVASA 241

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
                 +V  +        R   A  ++     +  L
Sbjct: 242 TRNGHTLVVSLF---NDDNRWTDAPAILDYGFRRLQL 275


>gi|160931610|ref|ZP_02079005.1| hypothetical protein CLOLEP_00442 [Clostridium leptum DSM 753]
 gi|156869481|gb|EDO62853.1| hypothetical protein CLOLEP_00442 [Clostridium leptum DSM 753]
          Length = 381

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 73/276 (26%), Positives = 129/276 (46%), Gaps = 19/276 (6%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK------PKYSSIVIDVNKNQMTGFKQDEPRYP 77
           +++ I+L   +L  + I+ S  +   A          +++++  + + +   K  E + P
Sbjct: 5   LKKRIKL-CALLAAAGILTSAGTPAAANGGEPSVSAKAAVLMTADNSTVLYEKAAEEKLP 63

Query: 78  -ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS TK+MT  +  E  Q++    + Q+ ++        S + LK     T       ++
Sbjct: 64  MASTTKIMTALLTLEAAQAE----DRQVKITDEMVRVEGSSMGLKPGNVVTLTALAQGML 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A    I+GS ++FA LM+ +AK+IGM+NT +   SGL D+N  TTA D A+
Sbjct: 120 LCSGNDAANAAAIAIAGSTEEFAKLMNQRAKQIGMKNTNFVTPSGLDDENHYTTAYDMAL 179

Query: 197 LGILLRKNFPQYYKYFSIRKFRYR------NRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           LG    +N  ++ +  S +  + +           NHN+LL       G+KTG+T+ SG 
Sbjct: 180 LGACAMEN-QRFREIASQKSMQVQFVEPDMKYTFGNHNRLLTAYEGCIGVKTGFTKKSGR 238

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            +V+        +VAV +  P      +  L+   S
Sbjct: 239 CLVSCAERDGVRLVAVTLNAPDDWNDHKAMLDYGFS 274


>gi|295091424|emb|CBK77531.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cf.
           saccharolyticum K10]
          Length = 474

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 72/251 (28%), Positives = 119/251 (47%), Gaps = 25/251 (9%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++++ D   +++   K  D   YPAS+TK+MT  ++ E+       L+  +  S++A T 
Sbjct: 94  AAVLYDATHDRVLYEKNADAQHYPASITKLMTALLVLEHC-----SLSDTVTFSQSAVTN 148

Query: 114 NPS---KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             S    L +K    FT EQ +  L+ +SAN+++    E +SGS   FA LM+ KA  +G
Sbjct: 149 LESGAVTLGVKAGDQFTIEQCLYGLLLKSANEIANGLAEHVSGSVSSFADLMNQKAASLG 208

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKN-------------FPQYYKYFSIRKF 217
              T + N +GL+D N  TTARD A++     +N             FP      S+RK 
Sbjct: 209 CTGTHFVNPNGLNDPNHYTTARDMALIAEAAFENPTLCRIASTVNYDFPATASVPSVRKL 268

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
              ++++  +NK       I G KTGYT  +G  +VT +      ++AV++   + Q   
Sbjct: 269 TMGHKMVNPNNK-EYYYEGIVGGKTGYTSLAGNTLVTCVERNGTRLIAVIL--KSRQTHY 325

Query: 278 QKALELITSFL 288
                L+    
Sbjct: 326 ADTKALLDYGF 336


>gi|322807302|emb|CBZ04876.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum H04402
           065]
          Length = 415

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 79/306 (25%), Positives = 140/306 (45%), Gaps = 27/306 (8%)

Query: 29  QLMGKILFLSIIMISMASELHAKP--KYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           +++  +L  S+   ++A    +KP  K ++   +++D    ++   K  D+P  PAS TK
Sbjct: 7   KILCSVLLFSLFFSNVALAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYPPASTTK 66

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT  +  E     + +L+  + + +       SK+Y+ E         +  L+  SAND
Sbjct: 67  IMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLLLASAND 121

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E++SGS   F+  M+ +AK++G  NT + N SGL++    T+ARD AI+   L 
Sbjct: 122 CAEALAEYLSGSLDNFSKDMNKRAKELGCTNTNFVNPSGLYNDKHRTSARDLAIIMNELV 181

Query: 203 KNFPQYYKYFSIRKFRYR-------NRIITNHNKLLNK-----MHNIDGIKTGYTRNSGF 250
           K  P+Y K  +   +           R + N NKL+ K         +G KTGYT  S  
Sbjct: 182 KQ-PEYSKIATTLSYNIPPTNKSKEKRPLWNENKLIQKHSNFYYKGCEGGKTGYTVQSDH 240

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLK 310
           + V S+   +  I+ V +     +     +++L        TL     + KD+  +T   
Sbjct: 241 SYVASVNKNNHRII-VALVHDKEKNFFDDSVKLFNYGFNNFTL--DLLYPKDSYVTTYTN 297

Query: 311 KSLMIK 316
            +L + 
Sbjct: 298 DNLKVP 303


>gi|148380930|ref|YP_001255471.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A str. ATCC 3502]
 gi|153933353|ref|YP_001385299.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936108|ref|YP_001388707.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A str. Hall]
 gi|148290414|emb|CAL84541.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str.
           ATCC 3502]
 gi|152929397|gb|ABS34897.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932022|gb|ABS37521.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A str. Hall]
          Length = 415

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 80/306 (26%), Positives = 140/306 (45%), Gaps = 27/306 (8%)

Query: 29  QLMGKILFLSIIMISMASELHAKP--KYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           +++  IL  S+   ++A    +KP  K ++   +++D    ++   K  D+P  PAS TK
Sbjct: 7   KILCSILLFSLFFSNVALAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYPPASTTK 66

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT  +  E     + +L+  + + +       SK+Y+ E         +  L+  SAND
Sbjct: 67  IMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLLLASAND 121

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E++SGS   F+  M+ +AK++G  NT + N SGL++    T+ARD AI+   L 
Sbjct: 122 CAEALAEYLSGSLDNFSKDMNKRAKELGCTNTNFVNPSGLYNDKHRTSARDLAIIMNELV 181

Query: 203 KNFPQYYKYFSIRKFRY-------RNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGF 250
           K  P+Y K  +   +           R + N NKL+ K         +G KTGYT  S  
Sbjct: 182 KQ-PEYSKIATTLSYNILPTNKSKEKRPLWNENKLIQKHSNFYYKGCEGGKTGYTVQSDH 240

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLK 310
           + V S+   +  I+ V +     +     +++L        TL     + KD+  +T   
Sbjct: 241 SYVASVNKNNHRII-VALVHDKEKNFFDDSVKLFNYGFNNFTL--DLLYPKDSYVTTYTN 297

Query: 311 KSLMIK 316
            +L + 
Sbjct: 298 DNLKVP 303


>gi|170760236|ref|YP_001788291.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169407225|gb|ACA55636.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 415

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 80/306 (26%), Positives = 140/306 (45%), Gaps = 27/306 (8%)

Query: 29  QLMGKILFLSIIMISMASELHAKP--KYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           +++  IL  S+   ++A    +KP  K ++   +++D    ++   K  D+P  PAS TK
Sbjct: 7   KILCSILLFSLFFSNVALAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYPPASTTK 66

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT  +  E     + +L+  + + +       SK+Y+ E         +  L+  SAND
Sbjct: 67  IMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLLLASAND 121

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E++SGS   F+  M+ +AK++G  NT + N SGL++    T+ARD AI+   L 
Sbjct: 122 CAEALAEYLSGSLDNFSKDMNKRAKELGCTNTNFVNPSGLYNNKHRTSARDLAIIMNELV 181

Query: 203 KNFPQYYKYFSIRKFRYR-------NRIITNHNKLLNK-----MHNIDGIKTGYTRNSGF 250
           K  P+Y K  +   +           R + N NKL+ K         +G KTGYT  S  
Sbjct: 182 KQ-PEYSKIATTLSYNIPPTNKSREKRPLWNENKLIQKHSNFYYKGCEGGKTGYTVQSDH 240

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLK 310
           + V S+   +  I+ V +     +     +++L        TL     + KD+  +T   
Sbjct: 241 SYVASVNKDNHRII-VALVHDKEKNFFDDSVKLFNYGFNNFTL--DLLYPKDSYVTTYTN 297

Query: 311 KSLMIK 316
            +L + 
Sbjct: 298 DNLKVP 303


>gi|150390086|ref|YP_001320135.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus
           metalliredigens QYMF]
 gi|149949948|gb|ABR48476.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus
           metalliredigens QYMF]
          Length = 441

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 127/299 (42%), Gaps = 37/299 (12%)

Query: 24  IQRNIQL-MGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPR-YPA 78
           +++++ L +  ++ L  +     S    KP  ++   +++D    ++   K      YPA
Sbjct: 1   MKKSVSLFLTCVITLIFMFNPDISHGEGKPSITAPNGVLLDFQTGEVLYDKNAHEITYPA 60

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           S TK +T  ++ E L+     L+  I V +       S +YL +   FT  + +  L+ R
Sbjct: 61  STTKALTAILVLENLE-----LDEVITV-EEDMFVGGSGMYLLKGEAFTVNELLHVLMIR 114

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           SANDV+      ISGS + FA LM+ +AK++G  N+ + N  GL D+  +TTA D A++G
Sbjct: 115 SANDVAELLATHISGSVEAFADLMNRRAKELGALNSHFTNPHGLPDEEHVTTAYDLAMIG 174

Query: 199 ILLRKNFPQYYKYFSI-------RKFRYRNRIITNHNKLLN-----------------KM 234
                 F    +            +F    R   N N+ L                  K 
Sbjct: 175 KHAI-TFDVLREIAGTVRYDVEPTEFTPETRYYRNTNRFLWGTGSGNQILYRGQYQNIKY 233

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
             ++G+KTG+T  +   ++ S    D   ++VV+G          +  LI    E   L
Sbjct: 234 DIVEGLKTGFTNAAQNCLIASAIQGDQRFISVVLGAQGVNV-YADSRALIDYGFENYQL 291


>gi|226311997|ref|YP_002771891.1| peptidase S11 family protein precursor [Brevibacillus brevis NBRC
           100599]
 gi|226094945|dbj|BAH43387.1| peptidase S11 family protein precursor [Brevibacillus brevis NBRC
           100599]
          Length = 389

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 67/265 (25%), Positives = 110/265 (41%), Gaps = 17/265 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
              + +IDV   ++   K   +    ASLTK MT  +  E  +     L+ Q+ V   A 
Sbjct: 38  AEGAALIDVESGRILYSKNGTKKMRIASLTKTMTAIVAIEMGK-----LDAQVTVPPQAV 92

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S +YLK     T E+ +  L+ RS ND +      I GS   F  LM+ KA  IGM
Sbjct: 93  GVEGSSIYLKNGEKLTLEELLYGLMLRSGNDAAVTIAMHIGGSVPGFTYLMNEKAAMIGM 152

Query: 172 QNTIYKNASGLHDKN-QITTARDQAILGILLRKNFPQYYKYFSIR------KFRYRNRII 224
           + T + N  GL D N   +T  D A L      N P + +  S +      +    +R +
Sbjct: 153 EYTNFTNPHGLDDSNQHYSTPEDMAKLSAYALHN-PVFRQIVSTKVKDISWEGEQWDRRL 211

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            N NK+L+  +  DG+KTGYT+ +   + +S       +  + +           + +L+
Sbjct: 212 LNKNKMLHLYNGADGVKTGYTKLAKRCLASSATRNGRQLATITLNASDD---WNDSAKLM 268

Query: 285 TSFLEKKTLKHQQTHRKDNLSSTSL 309
                   L+    + ++    T +
Sbjct: 269 DWGFANYPLQELVKNGQEVKPDTPV 293


>gi|331091250|ref|ZP_08340091.1| hypothetical protein HMPREF9477_00734 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404697|gb|EGG84236.1| hypothetical protein HMPREF9477_00734 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 400

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 131/301 (43%), Gaps = 28/301 (9%)

Query: 34  ILFLSIIMISMASELHAKPK----YSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           I+ +  I  S+ ++   KPK     S++++D +  ++   K  D+ R  AS TK+MT  +
Sbjct: 11  IVLIVTIFFSITAKAVEKPKELYAQSAVLMDADSGRILFEKNGDQRRAMASTTKIMTCIL 70

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
             E     +  L  ++  S+ AA Q    L +++   F     + +L+  S ND +    
Sbjct: 71  ALE-----RGGLEGEVVASENAAKQPKVHLGVEKGETFRLRDLLYSLMLESHNDSAVMIA 125

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN----QITTARDQAILGILLRKN 204
           E + GS +KFA +M+ KAK+IG  NT +   +GL  K+      TTA + A +       
Sbjct: 126 EKVGGSVEKFAKMMNEKAKEIGCINTYFITPNGLDAKDDTGKHSTTAGELAKIMSYCITQ 185

Query: 205 FP---QYYKYFSIRKFRYRN------RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
            P   ++      + +++ N       I  NHN  L  M      KTG+T  +G+  V +
Sbjct: 186 SPKKEEFLAITGQKSYQFTNMEKTRTYICHNHNAFLEMMEGAISGKTGFTGEAGYCYVGA 245

Query: 256 LRYKDDPIVAVVMGM---PTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           LR  D   V  ++G         +     +L+   L+  + +++         +  ++  
Sbjct: 246 LRRNDRTFVVALLGCGWPNNKTYKWSDTKKLMQYGLD--SFQYKDIEPAIYFETIPVENG 303

Query: 313 L 313
           +
Sbjct: 304 I 304


>gi|160935578|ref|ZP_02082953.1| hypothetical protein CLOBOL_00468 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441322|gb|EDP19032.1| hypothetical protein CLOBOL_00468 [Clostridium bolteae ATCC
           BAA-613]
          Length = 418

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 123/296 (41%), Gaps = 29/296 (9%)

Query: 53  KYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++++D +  ++   K QD  R  AS TK+MT  +  E  +         +  S  AA
Sbjct: 46  AQSAVLMDGDTGRILYGKGQDIIRPMASTTKIMTCILALENGRG-----EDAVKASSNAA 100

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +Q    L ++E   +  E  + AL+  S ND +    E I GS + FA +M+ KA  +G 
Sbjct: 101 SQPKVHLGVREGEEYRLEDLLYALMLESYNDAAVMIAEHIGGSVEGFAAMMNEKAAGLGC 160

Query: 172 QNTIYKNASGLH----DKN-----QITTARDQAILGILLRKNFP---QYYKYFSIRKFRY 219
            +T +   +GL     D+        TTA D A +        P   ++ K    +   +
Sbjct: 161 GDTYFITPNGLDGVKTDEQGKEHIHSTTASDLARIMRYCVTESPAKDEFLKITQTQNHYF 220

Query: 220 ------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM--- 270
                 R+    NHN  L  M  +   KTG+T  +G++ V ++  +    V  ++G    
Sbjct: 221 TDMAGKRSFNCYNHNAFLTMMEGVLSGKTGFTGGAGYSYVGAMENQGRTYVIALLGCGWP 280

Query: 271 PTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
           P    +   A +L T  LE    K +   +++  +   +   L  K+ +    Q +
Sbjct: 281 PHKTYKWSDARKLYTYGLEH--FKMKDVFQEETFARVPVSGGLCWKEGEGAIDQVE 334


>gi|266618868|ref|ZP_06111806.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf]
 gi|263528518|gb|EEZ28341.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf]
          Length = 415

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 80/306 (26%), Positives = 140/306 (45%), Gaps = 27/306 (8%)

Query: 29  QLMGKILFLSIIMISMASELHAKP--KYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           +++  IL  S+   ++A    +KP  K ++   +++D    ++   K  D+P  PAS TK
Sbjct: 7   KILCSILLFSLFFSNVALAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYPPASTTK 66

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT  +  E     + +L+  + + +       SK+Y+ E         +  L+  SAND
Sbjct: 67  IMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLLLASAND 121

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E++SGS   F+  M+ +AK++G  NT + N SGL++    T+ARD AI+   L 
Sbjct: 122 CAEALAEYLSGSLDNFSKDMNKRAKELGCTNTNFVNPSGLYNNKHRTSARDLAIIMNELV 181

Query: 203 KNFPQYYKYFSIRKFRYR-------NRIITNHNKLLNK-----MHNIDGIKTGYTRNSGF 250
           K  P+Y K  +   +           R + N NKL+ K         +G KTGYT  S  
Sbjct: 182 KQ-PEYSKIATTLSYNIPPTNKSKEKRPLWNENKLIQKHSNFYYKGCEGGKTGYTVQSDH 240

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLK 310
           + V S+   +  I+ V +     +     +++L        TL     + KD+  +T   
Sbjct: 241 SYVASVNKNNHRII-VALVHDKEKNFFDDSVKLFNYGFNNFTL--DLLYPKDSYVTTYTN 297

Query: 311 KSLMIK 316
            +L + 
Sbjct: 298 DNLKVP 303


>gi|163868321|ref|YP_001609530.1| penicillin-binding protein [Bartonella tribocorum CIP 105476]
 gi|161017977|emb|CAK01535.1| penicillin-binding protein [Bartonella tribocorum CIP 105476]
          Length = 387

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 132/289 (45%), Gaps = 12/289 (4%)

Query: 57  IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +++D N   +   KQ+    +PASL K+MT  ++F  L+   L    +  VS+ A  +  
Sbjct: 34  LLLDDNTETILYEKQECTSFFPASLVKLMTAEVVFHQLKEGLLKNTQKFKVSENAWRKGG 93

Query: 116 -----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                + ++ K KT       +  LI  + ND +    E ISG E  FA LM+ +AK IG
Sbjct: 94  APSGTTTMFAKIKTEINISDLLRGLIIVNGNDAAIILAEGISGDEDHFAQLMNQRAKIIG 153

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           +  + + NA+GL ++ Q  TARD  IL   + + +P YY  +    F + N    N N L
Sbjct: 154 LSQSHFVNATGLPEEGQFVTARDMIILARHIVQEYPDYYALYREPHFTWNNIFQRNKNPL 213

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF--- 287
           + K   ++G  +GY+   GF++V ++      +   + G+   ++   +   ++      
Sbjct: 214 IFKEIGVEGFGSGYSEKEGFSMVATIYKNHRRLFLAINGLQDGKKHTTEIERILQWGITA 273

Query: 288 LEKKTL--KHQQTHRKDNLSSTSLKKSLMIKK-LKRTYSQFKKIDAKAH 333
            + KT+  K ++               L++KK +    S  K ++ KA 
Sbjct: 274 FDLKTIFTKGERVGLASVYGGKKNFVPLIVKKPISFMLSNEKGVNVKAK 322


>gi|153823300|ref|ZP_01975967.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33]
 gi|126519164|gb|EAZ76387.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33]
          Length = 225

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 7/206 (3%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
           +    F S I+   A ++ AK     +++D +  ++   K+ D    PASLTKMMT Y+I
Sbjct: 20  LSSTAFASPIVTPDAPQIAAK---GYVLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVI 76

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            + ++   + LN  + +SK A  +N    SK++++  T          +I +S ND   A
Sbjct: 77  GQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVA 136

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E ++G+E  F  LM+  A  +GM+N+ + N+ GL D N  +T  D A+LG  L ++ P
Sbjct: 137 MAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVP 196

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLN 232
           + Y  +S +KF Y      N N LL 
Sbjct: 197 EEYAIYSEQKFTYNGITQYNRNGLLW 222


>gi|290891934|ref|ZP_06554931.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           J2-071]
 gi|290558528|gb|EFD92045.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           J2-071]
          Length = 433

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/335 (21%), Positives = 140/335 (41%), Gaps = 35/335 (10%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
           FL     + A+E       ++I I+ +  ++   K  +     AS+TKMM  Y++ E + 
Sbjct: 10  FLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAID 69

Query: 95  SKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             ++  + ++ +S+ A       + S + L+    +T ++   A+   SAN  + A  E 
Sbjct: 70  KGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAISEK 129

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-------------QITTARDQAIL 197
           I+GSEK+F   M+ KA+++ +    + N++GL++++                TAR  A L
Sbjct: 130 IAGSEKEFVDAMNKKAEELKLGEHQFVNSTGLNNEDLKGGQQVGGPKDENKMTARGMAKL 189

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM----HNIDGIKTGYTRNS 248
              L  ++P   K  S  K  +R        +TN N LL  +      +DG+KTG T  +
Sbjct: 190 AKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRQGVDGLKTGTTDYA 249

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQ------ERDQKALELITSFLEKKTLKHQQT--HR 300
           G  +  +       ++ VV+             R  +  +++        +K  Q    +
Sbjct: 250 GMCLTATAVQDGMRVITVVLHANGEAPGAHTSARFDETNKMLDYAFNNFKVKEVQKAGSK 309

Query: 301 KDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
             N S+ ++ K         T    K + +K  ++
Sbjct: 310 VKNPSTIAVDKGKEDTVGLVTKDAVKLVVSKNDNS 344


>gi|210615749|ref|ZP_03290730.1| hypothetical protein CLONEX_02948 [Clostridium nexile DSM 1787]
 gi|210150085|gb|EEA81094.1| hypothetical protein CLONEX_02948 [Clostridium nexile DSM 1787]
          Length = 413

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 70/309 (22%), Positives = 130/309 (42%), Gaps = 26/309 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP--KYSSIVIDVNKNQMTGFKQD-EPRYPASL 80
           I + I +      L   + S A E   K     S++++D +  ++   K   E +  AS 
Sbjct: 17  IVKRILVFILTCALLFGITSYAKEEEPKQLYAQSAVLMDADSGRVLFEKNGYEQKAMAST 76

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           TK+MT  +  E     K   +  + VS+ AA Q    L +     F     + +L+  S 
Sbjct: 77  TKIMTCILALE-----KGKPDQIVTVSENAARQPRVHLGMANGEQFYLRDLLYSLMLESH 131

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN----QITTARDQAI 196
           ND + A  E + G+ + FA +M+ KA+KIG ++T +   +GL   +      TTA + A 
Sbjct: 132 NDSAVAIAEQVGGTVEGFARMMNEKAEKIGCKDTYFITPNGLDASDENGKHSTTAEELAK 191

Query: 197 LGILLRKNFPQ---YYKYFSIRKFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRN 247
           +     K  PQ   + +    +   +      R     NHN  L  M      KTG+T +
Sbjct: 192 IMRYCIKLSPQKELFLEITQTQNHTFTDVEGKRQFSCNNHNVFLGMMDGALSGKTGFTGD 251

Query: 248 SGFNIVTSLRYKDDPIVAVVMGM---PTSQERDQKALELITSFLEKKTLKHQQTHRKDNL 304
           +G+  V +L+  +   +  ++G         + +    L+   L+K   +++   +K + 
Sbjct: 252 AGYCYVGALKQGERTFIVALLGCGWPNNKGYKWKDTKALMEYGLQKY--EYENVFQKQDS 309

Query: 305 SSTSLKKSL 313
           S   ++  +
Sbjct: 310 SCIIVENGI 318


>gi|228990579|ref|ZP_04150544.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
           12442]
 gi|228769105|gb|EEM17703.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
           12442]
          Length = 373

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 66/273 (24%), Positives = 127/273 (46%), Gaps = 14/273 (5%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTL 86
           I +   I+  S+I I   ++++    +++I+++ +  ++   K + E +  AS+TK+MT 
Sbjct: 6   IVIALIIMCASVIPIHTYAQMNDVSAHNAILMEEHSGRVLYGKLEHESQKIASITKIMTA 65

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            +  E  +     +   +P+S  A     S +YL+       E  +  L+ RS ND + A
Sbjct: 66  LLAAESGK-----MKEVVPISDKAVRVEGSAIYLQPGKKVPLEDLVYGLMLRSGNDAAQA 120

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRKNF 205
             E + GS + F  LM+ KAK+IGM++T + N  GL  D    ++A D A+L      N 
Sbjct: 121 IAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGTHYSSAYDMALLTRYAMGN- 179

Query: 206 PQYYKYFSIRKFRYR--NRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDP 262
             + K F  + ++ +  +    N +KL+   +    G KTG+T+ +G  +VT+       
Sbjct: 180 ETFRKIFGTKTYQSKMWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLD 239

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLKH 295
           ++ V +      +     + L     ++  L  
Sbjct: 240 LIVVTLNASNDWD---DHMYLFDQGFKQYELTK 269


>gi|226950403|ref|YP_002805494.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A2 str. Kyoto]
 gi|226841760|gb|ACO84426.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A2 str. Kyoto]
          Length = 415

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/306 (26%), Positives = 140/306 (45%), Gaps = 27/306 (8%)

Query: 29  QLMGKILFLSIIMISMASELHAKP--KYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           +++  IL  S+   ++A    +KP  K ++   +++D    ++   K  D+P  PAS TK
Sbjct: 7   KILCSILLFSLFFSNVALAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYPPASTTK 66

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT  +  E     + +L+  + + +       SK+Y+ E         +  L+  SAND
Sbjct: 67  IMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLLLASAND 121

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E++SGS   F+  M+ +AK++G  NT + N SGL++    T+ARD AI+   L 
Sbjct: 122 CAEALAEYLSGSLDNFSKDMNKRAKELGCINTNFVNPSGLYNDKHRTSARDLAIIMNELV 181

Query: 203 KNFPQYYKYFSIRKFRYR-------NRIITNHNKLLNK-----MHNIDGIKTGYTRNSGF 250
           K  P+Y K  +   +           R + N NKL+ K         +G KTGYT  S  
Sbjct: 182 KQ-PEYSKIATTLSYNIPPTNKSKEKRPLWNENKLIQKHSNFYYKGCEGGKTGYTVQSDH 240

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLK 310
           + V S+   +  I+ V +     +     +++L        TL     + KD+  +T   
Sbjct: 241 SYVASVNKNNHRII-VALVHDKEKNFFDDSVKLFNYGFNNFTL--DLLYPKDSYVTTYTN 297

Query: 311 KSLMIK 316
            +L + 
Sbjct: 298 DNLKVP 303


>gi|306820946|ref|ZP_07454566.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551060|gb|EFM39031.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 434

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 125/304 (41%), Gaps = 30/304 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++VI+    ++   K  + + +PAS TK+MT  +  E      L L   I V +     
Sbjct: 38  SAVVIESETGKILFDKNAKQKAFPASTTKIMTGLLAIE-----NLDLEKSITVPEDFQLV 92

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           + S +YL     F   + I A++  SAND        ISGS   F  LM+ KA ++G  N
Sbjct: 93  DGSSMYLLPGETFKVRELIQAVLIHSANDACVLLAIEISGSVDSFVQLMNQKAAELGATN 152

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-------RYRNRIITN 226
           T + N  GLHD N  TTA D AI+     KN  ++ K                  RI  N
Sbjct: 153 THFVNPHGLHDDNHYTTAYDMAIIAREAMKN-DEFRKIVGQSSLILPETPKTPEKRIYNN 211

Query: 227 HNKLLN--------------KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            N+ L               K   IDGIKTGYT   G  +V S    D  +++VV     
Sbjct: 212 TNRFLWSNSEIIYKNQYIPIKYDIIDGIKTGYTLEGGNCLVASGIKNDMRLISVVYNS-N 270

Query: 273 SQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
             E  + +  ++    +  ++++      + L S ++K S+  K           +  K 
Sbjct: 271 GFEMYRDSRIILDYGFDNFSVQN-IITAGEVLGSENIKNSIQEKVDFAIMQDVSNLMKKG 329

Query: 333 HSTQ 336
            S +
Sbjct: 330 GSPE 333


>gi|225163790|ref|ZP_03726088.1| Serine-type D-Ala-D-Ala carboxypeptidase [Opitutaceae bacterium
           TAV2]
 gi|224801583|gb|EEG19881.1| Serine-type D-Ala-D-Ala carboxypeptidase [Opitutaceae bacterium
           TAV2]
          Length = 310

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/245 (28%), Positives = 127/245 (51%), Gaps = 12/245 (4%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
             IV D    ++   +  D P  PAS+TK+MT  ++ + + +++L  +T + +S  A   
Sbjct: 39  GYIVTDAATGRVLLEENSDAPNPPASVTKLMTFLVVHDKITARQLSFDTPVTISLEAQRM 98

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S++YL+ +  FT +  + AL+ +SAND + A  E  +GS + F  LM+ +A ++GM +
Sbjct: 99  GGSQVYLETQERFTVDDLLYALMVQSANDAAIALAEAAAGSREAFVELMNTRAHQLGMTH 158

Query: 174 TIYKNASGLHDKNQ------ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN----RI 223
           T ++   GL           + + RD A+L   L  N     +Y S +   +R     + 
Sbjct: 159 TTWRTPHGLPPNTSLGQEPDLASPRDIALLSRHLLLN-TDILRYTSTKTRDFRPGPKVQA 217

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           + NHN LL +++  DG+KTGY   +GF++  +++  D  I+ V +G+P  ++RD     L
Sbjct: 218 MKNHNHLLWRVNGCDGLKTGYYAKAGFSLAATVQRNDRRIIVVTLGVPERKQRDVLVASL 277

Query: 284 ITSFL 288
           I    
Sbjct: 278 IEKGF 282


>gi|205373761|ref|ZP_03226563.1| penicilin binding protein (putative D-alanyl-D-alanine
           carboxypeptidase) [Bacillus coahuilensis m4-4]
          Length = 322

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 68/264 (25%), Positives = 137/264 (51%), Gaps = 19/264 (7%)

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT+ +I E ++  +++   ++  S+ AA+   S+++L+     T E+ +  +   SAND 
Sbjct: 1   MTMILIMEAIEKGQINWEDKVRTSEYAASMGGSQIFLEPGEEMTVEEMLKGIAIGSANDA 60

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           S A  EFI+GSE+ F  +M+NK +++ +++T+++N +GL   N  ++A D A++   L K
Sbjct: 61  SVAMAEFIAGSEEAFVEMMNNKVEELKLKDTVFQNPTGLPADNHFSSAYDMAMMAKELLK 120

Query: 204 NFPQYYKYFSI-----RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
            + +  ++        R+       + N NKL+     +DG+KTGYT  + + +  + + 
Sbjct: 121 -YEKITQFTGTYEDYLRENTDEKFWLVNTNKLVRFYDGVDGLKTGYTSEAKYCLTATAKV 179

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLE-----------KKTLKHQQTHRKDN--LS 305
            +  +VAVV G PT +ER+ +  +++                K+  + + +  K+N  + 
Sbjct: 180 GNMRVVAVVFGEPTPKERNAEVSKMLDYAFSQFMTHPMYEKGKEISEAKVSKGKENTVIG 239

Query: 306 STSLKKSLMIKKLKRTYSQFKKID 329
            T+   SL+ KK ++     +KI 
Sbjct: 240 MTNESISLLTKKGEKLEGIEEKIV 263


>gi|296284125|ref|ZP_06862123.1| D-alanyl-D-alanine carboxypeptidase [Citromicrobium bathyomarinum
           JL354]
          Length = 378

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 68/267 (25%), Positives = 128/267 (47%), Gaps = 13/267 (4%)

Query: 36  FLSIIMISMASELHAKPKYS-------SIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLY 87
           FL+ + +++ + L A+P          + +ID++  Q    +  + R+ PAS+TK+MT  
Sbjct: 4   FLAALSLALPTGLSAQPSPPTPEQAPIAYMIDLSSGQTLYARDIDRRFVPASITKVMTTL 63

Query: 88  IIFEYLQSKKLHLNTQIP---VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           + F+ L   KL  + ++P    S     +  S L+L  +   +  + ++ + T SAND +
Sbjct: 64  VAFDMLADGKLRRDQRMPYRDASFDEWHRKGSTLFLPRRARPSVNELLIGITTVSANDAA 123

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ-ITTARDQAILGILLRK 203
               E  SGS  K+   M+  A+ IGM ++ +   +G  D+    T+ARD  +L   + +
Sbjct: 124 VVLAEGASGSVDKWTARMNATARSIGMHDSYFGTPNGWPDEGHTFTSARDLGLLAKRIIR 183

Query: 204 NFPQYYKYFSIRK-FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
             P ++ Y+  R   +       NH+ +  ++   DG+KTGYT  +G+  + +       
Sbjct: 184 GHPDFFDYYYGRTGLKAYGIAQDNHDPITGRVDGADGLKTGYTDQAGYGFLGTAERDGRR 243

Query: 263 IVAVVMGMPTSQERDQKALELITSFLE 289
           +V VV G    Q R++ A + I    +
Sbjct: 244 LVMVVAGADRGQVRNRAARDFIEWGFD 270


>gi|255029224|ref|ZP_05301175.1| hypothetical protein LmonL_09016 [Listeria monocytogenes LO28]
          Length = 432

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 77/335 (22%), Positives = 139/335 (41%), Gaps = 35/335 (10%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
           FL     + A+E       ++I I+ +  ++   K  +     AS+TKMM  Y++ E + 
Sbjct: 9   FLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAID 68

Query: 95  SKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             KL  + ++ +S+ A       + S + L+    +T ++   A+   SAN  + A  E 
Sbjct: 69  KGKLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAISEK 128

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-------------QITTARDQAIL 197
           I+GSEK+F   M+ KA ++ +    + NA+GL++++                TAR  A L
Sbjct: 129 IAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTARGMAKL 188

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM----HNIDGIKTGYTRNS 248
              L  ++P   K  S  K  +R        +TN N LL  +      +DG+KTG T  +
Sbjct: 189 AKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTGTTDYA 248

Query: 249 GFNIVTSLRYKDDPIVAVVM----GMPTSQ--ERDQKALELITSFLEKKTLKHQQT--HR 300
           G  +  +       ++ VV+    G P      R  +  +++        +K  Q    +
Sbjct: 249 GMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYAFNNFKVKEVQKAGSK 308

Query: 301 KDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
             N S+ ++ K         T    K +  K  + 
Sbjct: 309 VKNPSTIAVDKGKEDTVGLVTKDAVKLVVPKNGNA 343


>gi|213853083|ref|ZP_03382615.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 222

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 103/214 (48%), Gaps = 10/214 (4%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLT 81
           R++     +LFL    +    +  A P     + I++D    ++      DE   PASLT
Sbjct: 9   RSLAAGSVLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLT 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILAL 135
           K+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +       +
Sbjct: 69  KIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGI 128

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I +S ND   A  ++++GS++ F  LM+  AK++G+ NT ++   GL    Q +TARD A
Sbjct: 129 IIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMA 188

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           +LG  L  + P  Y     ++F + N    N N+
Sbjct: 189 LLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRNR 222


>gi|312127658|ref|YP_003992532.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777677|gb|ADQ07163.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 374

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 125/289 (43%), Gaps = 16/289 (5%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASE---LHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           +  +  + +   I+  +   I  A+E   L      S+I I+    ++   K  D     
Sbjct: 1   MKARAFVLVFALIITTTFGKICYANEKKNLPQVSSKSAIAIEWVTGKILFEKNKDLKLPM 60

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK+MT  ++ E        +N +I +   A     S +YL++         +  L+ 
Sbjct: 61  ASTTKIMTAILVLENCD-----VNKEIEIPLQAVGVPGSSMYLEKGEKLKIIDLLYGLML 115

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND + A     +G  K+F  LM+ KAK++G+ NT++ +  GL      TTA D A L
Sbjct: 116 SSGNDAAVALAIATAGDVKRFVKLMNKKAKELGLSNTVFSSPHGLEQGQHYTTAHDLAKL 175

Query: 198 GILLRKNFPQYYKYFSI------RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
                +N P + +             R  NRI+ N NK+L      +G+KTG+T+ +G  
Sbjct: 176 AAYAMRN-PIFRQIVKTTEREVPWTTRPYNRILKNKNKMLRLYPGAEGVKTGFTKKAGRC 234

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           +VTS+   D  ++ VV+  P      QK L+   +  +   L   +   
Sbjct: 235 LVTSVCRDDFRVICVVLNAPDMWNDTQKILDYCYNNFKVVKLLPGEIGY 283


>gi|308174109|ref|YP_003920814.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens DSM
           7]
 gi|307606973|emb|CBI43344.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*)
           [Bacillus amyloliquefaciens DSM 7]
 gi|328552762|gb|AEB23254.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens
           TA208]
 gi|328912440|gb|AEB64036.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*)
           [Bacillus amyloliquefaciens LL3]
          Length = 383

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 81/317 (25%), Positives = 137/317 (43%), Gaps = 14/317 (4%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           +  + L+  ++  SI   + A         S+I+ID    ++   K     R  AS+TK+
Sbjct: 6   KAAVFLLTFVILFSITDGNTAHAQIHVSAKSAILIDGTSGRVLFAKDEHHKRRIASITKI 65

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT  +  E  + +K      + VS  A     S +YL+       +  +  L+ RS ND 
Sbjct: 66  MTAVLAIESGKMEK-----TVTVSPNAVKTEGSAIYLQPGQKVKLKDLVYGLMLRSGNDA 120

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLR 202
           + A  E++ GS   F  +M+ KA++IGM+NT ++N  GL D +N  +TA D A+L     
Sbjct: 121 AAAIAEYVGGSLDGFVFMMNQKAEQIGMENTKFQNPHGLDDHENLYSTAYDMALLTKYAM 180

Query: 203 KNFPQYYKYFSIRKFRYR--NRIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYK 259
           K   +Y      + ++    +R+  N NKLL        G KTGYT+ +   +V++    
Sbjct: 181 K-IKEYRTVSGTKVYKAETMDRVWKNKNKLLTGLYPYSTGGKTGYTKIAKRTLVSTASKD 239

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKK-L 318
              ++AV +  P   +        +  F   KT    +      L  T   K   I + +
Sbjct: 240 GTDLIAVTINDPDDWDDHMNMFNYV--FENYKTYVVAKKGGIPKLKKTFYGKHAFITRDV 297

Query: 319 KRTYSQFKKIDAKAHST 335
           K    + +  D K  +T
Sbjct: 298 KYLLKEDEIDDVKISTT 314


>gi|291520325|emb|CBK75546.1| D-alanyl-D-alanine carboxypeptidase [Butyrivibrio fibrisolvens
           16/4]
          Length = 463

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 80/339 (23%), Positives = 144/339 (42%), Gaps = 41/339 (12%)

Query: 22  IYIQRNI-QLMGKILFLSIIMISMASELHAKP---------KYSSIVIDVNKNQMTGFKQ 71
           + ++R I +L+  +L ++ + +    ++ A             S+I+++     +   K 
Sbjct: 1   MSLKRFISKLLAFVLLINGLFLFNYRDVKAADYWPSGVDVTAESAIIMEQETGTILYSKN 60

Query: 72  -DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFT 127
            DE  YPAS+TK+MT  I+ E     K  L+  +  S  A        S +        T
Sbjct: 61  IDEVHYPASITKIMTALIVLE-----KCKLDETVKFSAEAVYGTELGSSSIARDVNEEMT 115

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
            EQ +  ++  SAN+ + A GE ++G    F  +M+ KAK++G  NT + N +GL D+  
Sbjct: 116 VEQTLYGMMLESANECAYALGEHVAGDIPSFVKMMNEKAKELGCTNTHFNNTNGLPDEEH 175

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-------NRIITNHNKLLNK------- 233
            TTA D A++        P++ +    + +             + NH+++L+        
Sbjct: 176 YTTAHDMALISRAAF-AIPKFAEIVGTKNYTIPPTNKHADPTPLNNHHQMLHYYKSNKYI 234

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
                G KTGYT  +G  +VT  +     ++ VVM   T  E+   +  L     +  + 
Sbjct: 235 YDYCLGGKTGYTAVAGATLVTYAKKDGMTLICVVMK-DTVGEQYPDSTNLFEYCFDNFS- 292

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
               T+   + +S S ++   I  +    S   KID K 
Sbjct: 293 ----TYSVADFASIS-EEDTNITGILSENSDLIKIDKKG 326


>gi|312793461|ref|YP_004026384.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180601|gb|ADQ40771.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 387

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 125/289 (43%), Gaps = 16/289 (5%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYS---SIVIDVNKNQMTGFKQ-DEPRYP 77
           +  +  + +   I+  +   I  A+E    P+ S   +I I+    ++   K  D     
Sbjct: 14  MKARAFVLVFALIITTTFGKICYANEKKNLPQISSKSAIAIEWVTRKILFEKNKDLKLPM 73

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK+MT  ++ E        +N +I +   A     S +YL++         +  L+ 
Sbjct: 74  ASTTKIMTAILVLENCD-----VNKEIEIPPQAVGVPGSSMYLEKGEKLKIIDLLYGLML 128

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND + A     +G  K+F  LM+ KAK++G+ NT++ +  GL      TTA D A L
Sbjct: 129 SSGNDAAVALAIATAGDVKRFVNLMNKKAKELGLSNTVFSSPHGLEQGEHYTTAHDLAKL 188

Query: 198 GILLRKNFPQYYKYFSI------RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
                +N P + +             R  NRI+ N NK+L      +G+KTG+T+ +G  
Sbjct: 189 AAYAMRN-PIFRQIVKTTEKEVPWTTRPYNRILKNKNKMLRLYPGAEGVKTGFTKKAGRC 247

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           +VTS    D  ++ VV+  P      +K L+   S  +   L   +   
Sbjct: 248 LVTSACRDDFRVICVVLNAPNMWNDTRKILDYCYSNFKVVKLLPGEIGY 296


>gi|150390405|ref|YP_001320454.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus
           metalliredigens QYMF]
 gi|149950267|gb|ABR48795.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus
           metalliredigens QYMF]
          Length = 377

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 114/247 (46%), Gaps = 11/247 (4%)

Query: 49  HAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS 107
           H    +++I++DV   ++   +   E    AS TK++T  +  E      L L+  I V+
Sbjct: 36  HFPSSHAAILMDVETGRVLAGQNFHEKMPMASTTKILTGLLAVE-----NLPLDKLISVN 90

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
             A     S +YL+      +   I  L+ RS ND + A    ISGS + FA LM+ +AK
Sbjct: 91  PKAVGVEGSSIYLESNERVKSIDLIYGLMLRSGNDAAEAIAYEISGSIEDFATLMNQRAK 150

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSIRKFRYRNRIIT 225
           +IG  NT + N  GLH  +  TTA D +++     KN  F +  K    +  R  ++   
Sbjct: 151 EIGANNTNFMNPHGLHHDDHYTTAYDLSLITRAALKNVTFKEVVKTEFWQAEREGHKDFA 210

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N NKLL    + DG+KTGYTR SG  +V S    +   +AV +      +       L+ 
Sbjct: 211 NKNKLLKSYESADGVKTGYTRRSGRCLVASATNNNMQFIAVTL---NDSDDFNTTRTLLE 267

Query: 286 SFLEKKT 292
              E  +
Sbjct: 268 YGFETYS 274


>gi|47095562|ref|ZP_00233170.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str.
           1/2a F6854]
 gi|47015992|gb|EAL06917.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str.
           1/2a F6854]
          Length = 433

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 77/335 (22%), Positives = 139/335 (41%), Gaps = 35/335 (10%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
           FL     + A+E       ++I I+ +  ++   K  +     AS+TKMM  Y++ E + 
Sbjct: 10  FLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAID 69

Query: 95  SKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             KL  + ++ +S+ A       + S + L+    +T ++   A+   SAN  + A  E 
Sbjct: 70  KGKLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAISEK 129

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-------------QITTARDQAIL 197
           I+GSEK+F   M+ KA ++ +    + NA+GL++++                TAR  A L
Sbjct: 130 IAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTARGMAKL 189

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM----HNIDGIKTGYTRNS 248
              L  ++P   K  S  K  +R        +TN N LL  +      +DG+KTG T  +
Sbjct: 190 AKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTGTTDYA 249

Query: 249 GFNIVTSLRYKDDPIVAVVM----GMPTSQ--ERDQKALELITSFLEKKTLKHQQT--HR 300
           G  +  +       ++ VV+    G P      R  +  +++        +K  Q    +
Sbjct: 250 GMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYAFNNFKVKEVQKAGSK 309

Query: 301 KDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
             N S+ ++ K         T    K +  K  + 
Sbjct: 310 VKNPSTIAVDKGKEDTVGLVTKDAVKLVVPKNGNA 344


>gi|323704094|ref|ZP_08115696.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Desulfotomaculum nigrificans DSM 574]
 gi|323530944|gb|EGB20881.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Desulfotomaculum nigrificans DSM 574]
          Length = 373

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 82/300 (27%), Positives = 133/300 (44%), Gaps = 28/300 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++ +++V   ++   KQ D+ R PASLTK+MT  +  E     K +L   + V K AA
Sbjct: 22  ASAACLMEVATGRIYFAKQGDKRREPASLTKIMTAILAIE-----KGNLKDVVTVGKKAA 76

Query: 112 TQN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             +    + L        E  + A +  SAND + A GE I+GS   F  +M++KAK +G
Sbjct: 77  AVSMGQDIGLSPGDRLYLEDLLKAALMYSANDSTVAIGEHIAGSHDAFIKMMNDKAKVLG 136

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----------- 219
           M++T Y N +G H+ N  TTA D A L     KN P +  +   R+              
Sbjct: 137 MKDTRYANTNGYHNPNHYTTAIDLAKLTCYALKN-PVFASFVRTREATITWLPKEKTGNP 195

Query: 220 --------RNRIITNHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
                   R R+I N N LL      I+G+KTG T  +G  ++ S   +   +VAVV+  
Sbjct: 196 QEVQTETPRQRVIHNTNALLESNFEGINGVKTGTTPRAGKCLIASATREGRQLVAVVLNS 255

Query: 271 PTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
           P   +     LE        + L  +     +      +++ + +   K+  +   +ID+
Sbjct: 256 PNRWDDATNLLEYGFREFRPQVLSEKDEVMGEIPVVEGVEQKVTLVAAKKVEAYVARIDS 315


>gi|146296825|ref|YP_001180596.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410401|gb|ABP67405.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 452

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 85/319 (26%), Positives = 149/319 (46%), Gaps = 36/319 (11%)

Query: 21  SIYIQRNIQLMGKILFLSIIMIS------MASELHAKPKYSSIVIDVNKNQMTGFKQDEP 74
           S    R   L+  ILF+ + + S      + S+++AK   S+I+I+ N  Q+   K    
Sbjct: 9   SFNSLRIALLIFLILFIPVPVYSKEESNTLLSDINAK---SAILIEANTGQILFQKNPNS 65

Query: 75  R-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP--SKLYLKEKTYFTTEQG 131
           R +PAS TK++T  +      SK+  L+    VSK A    P  S  YL E    + +  
Sbjct: 66  RCFPASTTKILTALVAL----SKEKDLDKLFKVSKNAIMIEPGSSSYYLNEGETISFQDA 121

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + A++  SAND +    E ISGS ++F   M+  A+ IG +++ + N SGLH+    TTA
Sbjct: 122 LYAMLLISANDAANVIAENISGSIQEFVKEMNQFAQNIGAKDSHFVNPSGLHNPQHYTTA 181

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRN---------RIITNHNKLLNK-----MHNI 237
            D +++     KN     K  S  +++            +II N NKLL K         
Sbjct: 182 YDLSLIARQAYKN-ETLRKIVSTVEYKITTASMHKKPDWQIIYNINKLLRKNSKYYYPYA 240

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQ 297
           +G+KTGYT  +   ++ S +  D  ++AV++   +S +    A++L+         + ++
Sbjct: 241 NGMKTGYTAQAKRCLIASAKKDDIDLIAVIL---SSDDAFADAIKLLDYGFNN--FRKEE 295

Query: 298 THRKDNLSSTSLKKSLMIK 316
             +++ +    +   +  K
Sbjct: 296 LFKQNQIIGKVMVDKVNKK 314


>gi|154684528|ref|YP_001419689.1| DacA [Bacillus amyloliquefaciens FZB42]
 gi|154350379|gb|ABS72458.1| DacA [Bacillus amyloliquefaciens FZB42]
          Length = 443

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 68/286 (23%), Positives = 132/286 (46%), Gaps = 34/286 (11%)

Query: 38  SIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEY 92
             + +S A      P      ++I+I+ +  ++   K  + R P AS+TKMMT Y++ E 
Sbjct: 22  CFVPMSKAEAAGNDPIDVNASAAIMIEASSGKILYSKNADKRLPIASMTKMMTEYLLLEA 81

Query: 93  LQSKKLHLNTQIP----VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           ++  K+  +        V + +   + S + L++   +T ++   A+   SAN  + A  
Sbjct: 82  IKEGKVKWDQTYTPDDYVYEISQDNSLSNVPLRKDGKYTVKELYQAMAIYSANGAAIAVA 141

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------------QITTARDQ 194
           E ++G+E KF   M+ KAK++GM N  +KNA+GL +++                 +A+D 
Sbjct: 142 EILAGTETKFVAEMNAKAKELGMTNYDFKNATGLVNEDLHGKQPQGEGVKEESEVSAKDM 201

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNK----MHNIDGIKTGYT 245
           A+L   L  ++P+  K  SI K ++R        + N N +L         +DG+KTG T
Sbjct: 202 ALLADRLITDYPEVLKTTSIAKTKFRAGTDDEMDMPNWNFMLKGLVSEYPGVDGLKTGST 261

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTS--QERDQKALELITSFLE 289
            ++G    ++ +     ++ VV+    +    R  +  +++     
Sbjct: 262 DSAGSCFTSTAQRNGMRVITVVLNAKGNLHTGRFDETKKMLDYAFN 307


>gi|4104145|gb|AAD01953.1| penicillin-binding protein homolog [Listeria monocytogenes]
          Length = 433

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 75/333 (22%), Positives = 138/333 (41%), Gaps = 35/333 (10%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
           FL     + A+E       ++I I+ +  ++   K  +     AS+TKMM  Y++ E + 
Sbjct: 10  FLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAID 69

Query: 95  SKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             ++  + ++ +S+ A       + S + L+    +T ++   A+   SAN  + A  E 
Sbjct: 70  KGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAISEK 129

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-------------QITTARDQAIL 197
           I+GSEK+F   M+ KA ++ +    + NA+GL++++                TAR  A L
Sbjct: 130 IAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTARGMAKL 189

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM----HNIDGIKTGYTRNS 248
              L  ++P   K  S  K  +R        +TN N LL  +      +DG+KTG T  +
Sbjct: 190 AKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTGTTDYA 249

Query: 249 GFNIVTSLRYKDDPIVAVVM----GMPTSQ--ERDQKALELITSFLEKKTLKHQQT--HR 300
           G  +  +       ++ VV+    G P      R  +  +++        +K  Q    +
Sbjct: 250 GMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYAFNNFKVKEVQKAGSK 309

Query: 301 KDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAH 333
             N S+ ++ K         T    K +  K  
Sbjct: 310 VKNPSTIAVDKGKEDTVGLVTKDAVKLVVPKNG 342


>gi|47092644|ref|ZP_00230431.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str. 4b
           H7858]
 gi|47018939|gb|EAL09685.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str. 4b
           H7858]
          Length = 433

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 75/333 (22%), Positives = 138/333 (41%), Gaps = 35/333 (10%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
           FL     + A+E       ++I I+ +  ++   K  +     AS+TKMM  Y++ E + 
Sbjct: 10  FLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAID 69

Query: 95  SKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             ++  + ++ +S+ A       + S + L+    +T ++   A+   SAN  + A  E 
Sbjct: 70  KGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAISEK 129

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-------------QITTARDQAIL 197
           I+GSEK+F   M+ KA ++ +    + NA+GL++++                TAR  A L
Sbjct: 130 IAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTARGMAKL 189

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM----HNIDGIKTGYTRNS 248
              L  ++P   K  S  K  +R        +TN N LL  +      +DG+KTG T  +
Sbjct: 190 AKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTGTTDYA 249

Query: 249 GFNIVTSLRYKDDPIVAVVM----GMPTSQ--ERDQKALELITSFLEKKTLKHQQT--HR 300
           G  +  +       ++ VV+    G P      R  +  +++        +K  Q    +
Sbjct: 250 GMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYAFNNFKVKEVQKAGSK 309

Query: 301 KDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAH 333
             N S+ ++ K         T    K +  K  
Sbjct: 310 VKNPSTIAVDKGKEDTVGLVTKDAVKLVVPKNG 342


>gi|296449308|ref|ZP_06891091.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           difficile NAP08]
 gi|296880760|ref|ZP_06904710.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           difficile NAP07]
 gi|296261835|gb|EFH08647.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           difficile NAP08]
 gi|296428255|gb|EFH14152.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           difficile NAP07]
          Length = 414

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 138/318 (43%), Gaps = 28/318 (8%)

Query: 34  ILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLY 87
           IL L  I I+        P       ++++ID    ++   K  DE    ASL+KMMT  
Sbjct: 15  ILTLIFIFITPGFAFADTPPVPNSSRAALLIDQETKRILFEKNIDEKMPLASLSKMMTFL 74

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           +  E +   ++     + + K+ A+   S   LK+    +  + +  L+  S ND + A 
Sbjct: 75  LAIEAIDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGELMQGLMLVSGNDAALAI 134

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---DKNQI-------TTARDQAIL 197
            + I  +EK F  +M+ KA++IGM +T Y N +GL    D           +TA D   L
Sbjct: 135 AKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHKEPPIENISTAHDIVTL 194

Query: 198 GILLRKNF-PQYYKYFSIRKF--RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
           G  +  ++  Q  +  +++ +    ++    N N LL  +  +DGIKTGYT N+G+ +  
Sbjct: 195 GKYMYDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVDGIKTGYTDNAGYCLAF 254

Query: 255 SL-------RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSST 307
           S+         ++  ++ VV+G    + R   +  L+     K     ++   K ++  T
Sbjct: 255 SMMIPKDAKNERNHRLIGVVLGDGNKKNRISSSASLLKYG--KDNFHSKKIAHKGDIIET 312

Query: 308 SLKKSLMIKKLKRTYSQF 325
                +   K+K    + 
Sbjct: 313 PCVDGIDDFKIKVKVDKD 330


>gi|307572345|emb|CAR85524.1| dacA [Listeria monocytogenes L99]
          Length = 433

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/335 (21%), Positives = 139/335 (41%), Gaps = 35/335 (10%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
           FL     + A+E       ++I I+ +  ++   K  +     AS+TKMM  Y++ E + 
Sbjct: 10  FLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAID 69

Query: 95  SKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             ++  + ++ +S+ A       + S + L+    +T ++   A+   SAN  + A  E 
Sbjct: 70  KGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAISEK 129

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-------------QITTARDQAIL 197
           I+GSEK+F   M+ KA+++ +    + N++GL++++                TAR  A L
Sbjct: 130 IAGSEKEFVDAMNKKAEELKLGEHQFVNSTGLNNEDLKGGQQVGGPKDENKMTARGMAKL 189

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM----HNIDGIKTGYTRNS 248
              L  ++P   K  S  K  +R        +TN N LL  +      +DG+KTG T  +
Sbjct: 190 AKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRQGVDGLKTGTTDYA 249

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQ------ERDQKALELITSFLEKKTLKHQQT--HR 300
           G  +  +       ++ VV+             R  +  +++        +K  Q    +
Sbjct: 250 GMCLTATAVQDGMRVITVVLHANGEAPGAHTSARFDETNKMLDYAFNNFKVKEVQKAGSK 309

Query: 301 KDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
             N S+ ++ K         T    K +  K  ++
Sbjct: 310 VKNPSTIAVDKGKEDTVGLVTKDAVKLVVPKNDNS 344


>gi|302385725|ref|YP_003821547.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           saccharolyticum WM1]
 gi|302196353|gb|ADL03924.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           saccharolyticum WM1]
          Length = 439

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 64/282 (22%), Positives = 123/282 (43%), Gaps = 28/282 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++++D +  ++   K  D  R  AS TK+MT  +  EY      +L+  +  S+ A+
Sbjct: 59  AQSAVLMDASTGRILYGKNEDIARPMASTTKIMTCILALEYG-----NLSDTVTASQNAS 113

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +Q    L + +   F  +  + +L+  S ND +    E I GS++ FA LM+ KA+ +G 
Sbjct: 114 SQPKVHLGVYKGETFLLKDLLYSLMLESHNDAAMMIAEHIGGSQEGFAGLMNQKARDLGC 173

Query: 172 QNTIYKNASGLHD--------KNQITTARDQAILGILLRKNFP---QYYKYFSIRKFRY- 219
            +T +   +GL          K   TTA D A +        P   ++ +    + + + 
Sbjct: 174 TDTYFITPNGLDAREEKDGQVKEHSTTAADLARIMNYCIGQSPKKKEFLEITGTKSYSFT 233

Query: 220 -----RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM---P 271
                R+    NHN LL  M+     KTG+T  +G++ V + +         ++G    P
Sbjct: 234 DLEGKRSYSCNNHNTLLAMMNGAFSGKTGFTGGAGYSYVGAAQDNGRIYTIALLGCGWPP 293

Query: 272 TSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSL 313
               +   A +L    +E+    ++  ++  +L    +K+ +
Sbjct: 294 HKAYKWSDARKLFQYGMER--FHYRNVYKDLSLPDIPVKEGI 333


>gi|255022591|ref|ZP_05294577.1| D-alanyl-D-alanine carboxypeptidase DacA (DD-peptidase)
           (DD-carboxypeptidase) (CPase) (Penicillin-binding
           protein [Listeria monocytogenes FSL J1-208]
          Length = 433

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 73/335 (21%), Positives = 141/335 (42%), Gaps = 35/335 (10%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
           FL     + A+E       ++I I+ +  ++   K  +     AS+TKMM  Y++ E + 
Sbjct: 10  FLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAID 69

Query: 95  SKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             ++  + ++ +S+ A       + S + L+    +T ++   A+   SAN  + A  E 
Sbjct: 70  KGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAISEK 129

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-------------QITTARDQAIL 197
           I+GSEK+F   M+ KA+++ +    + N++GL++++                TAR  A L
Sbjct: 130 IAGSEKEFVDAMNKKAEELKLGEHQFVNSTGLNNEDLKGGQQVGGPKDENKMTARGMAKL 189

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM----HNIDGIKTGYTRNS 248
              L  ++P   K  S  K  +R        +TN N LL  +      +DG+KTG T  +
Sbjct: 190 AKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRQGVDGLKTGTTDYA 249

Query: 249 GFNIVTSLRYKDDPIVAVVM----GMPTSQ--ERDQKALELITSFLEKKTLKHQQT--HR 300
           G  +  +       ++ VV+    G P +    R  +  +++        +K  Q    +
Sbjct: 250 GMCLTATAVQDGMRVITVVLHANGGAPGAHTSARFDETNKMLDYAFNNFKVKEVQKAGSK 309

Query: 301 KDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
             + S+  + K         T    K +  K  ++
Sbjct: 310 VKDPSTIEVDKGKEDTVGLVTKDAVKLVVPKNDNS 344


>gi|229000174|ref|ZP_04159743.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
 gi|228759506|gb|EEM08483.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
          Length = 426

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 72/341 (21%), Positives = 153/341 (44%), Gaps = 31/341 (9%)

Query: 22  IYIQRNIQLMGKIL--FLSI-IMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           +Y+++ + ++   L  F S+ + IS A E       ++I+ D +  ++   +  DE    
Sbjct: 1   MYMRKILSILLVFLLSFSSLGVTISHAEEKIHIEAAAAILFDADTGKILHEQNPDELLAI 60

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGIL 133
           AS++K++ +Y + E ++  K+  +T++ +S  A         S +  ++   +T ++   
Sbjct: 61  ASMSKLIVVYSVLEAIKEGKITWDTKVNISDYAYEISRNNEFSNVPFEKGRQYTVKELYH 120

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN------- 186
           ++I  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ +       
Sbjct: 121 SIIIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHPE 180

Query: 187 -------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RIITNHNKLLNK- 233
                     +ARD  IL   +   +P+  +    R   + +       + N N +L   
Sbjct: 181 GTDPNGENSLSARDMGILSKTIITKYPEILEDTKQRFRNFPDNHPKPIRMENWNWMLPGA 240

Query: 234 ---MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                  DG+KTG +  +G+    S +  D  +++V++   +  ER  ++ ELI      
Sbjct: 241 AFAYEGTDGLKTGSSDTAGYGFTISAKRGDLRLISVIIKTKSMDERFTESRELIDYGFNN 300

Query: 291 KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
              +  +  + + +S     +  +  K ++  +   K  +K
Sbjct: 301 FEKQKLKIDKNNTISVVKGTEDTVTVKPEKEITVITKKGSK 341


>gi|166031716|ref|ZP_02234545.1| hypothetical protein DORFOR_01416 [Dorea formicigenerans ATCC
           27755]
 gi|166028169|gb|EDR46926.1| hypothetical protein DORFOR_01416 [Dorea formicigenerans ATCC
           27755]
          Length = 430

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 131/297 (44%), Gaps = 29/297 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++++D +  ++   K++E  R  AS TK+MT  I  E++       N  +  S  AA
Sbjct: 54  AQSAVLMDADSGRVLFGKEEEAIRPMASTTKIMTCIIALEHMTD-----NEIVTASAYAA 108

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +Q    L ++E   F     + +L+  S ND +    E I+GS + F  +M+ KA+++G+
Sbjct: 109 SQPKVHLGVREGQQFYLRDILFSLMLESHNDSAVMVAEEIAGSVEAFVKMMNEKAEELGL 168

Query: 172 QNTIYKNASGLHDKN----QITTARDQAILGILLRKNFPQ---YYKYFSIRKFRYRN--- 221
             T +   +GL  ++      TTA + A +      + P+   +      +++ +R+   
Sbjct: 169 TKTHFVTPNGLDGEDEGGVHATTAMELAKIMKYCIMDSPEKEMFLDITGTKEYHFRDLKG 228

Query: 222 ---RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM--GMPTSQE- 275
                 TNHN  L  M      KTG+T ++G+  V +LR  +   +  ++  G P  +  
Sbjct: 229 TSSYTCTNHNAFLTMMDGAISGKTGFTADAGYCYVGALRRDERTFIVALLACGWPNHKGY 288

Query: 276 RDQKALELITSFLEK-------KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQF 325
           +     +L+   L         + L  Q+   KD+ +  ++ +   + +++      
Sbjct: 289 KWSDTKKLMEYGLANYEYRNVWQELPKQEIVVKDSGNDQNIYQKNSVAEVEIQQKPE 345


>gi|255654539|ref|ZP_05399948.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-23m63]
          Length = 409

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 138/318 (43%), Gaps = 28/318 (8%)

Query: 34  ILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLY 87
           IL L  I I+        P       ++++ID    ++   K  DE    ASL+KMMT  
Sbjct: 10  ILTLIFIFITPGFAFADTPPVPNSSRAALLIDQETKRILFEKNIDEKMPLASLSKMMTFL 69

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           +  E +   ++     + + K+ A+   S   LK+    +  + +  L+  S ND + A 
Sbjct: 70  LAIEAIDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGELMQGLMLVSGNDAALAI 129

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---DKNQI-------TTARDQAIL 197
            + I  +EK F  +M+ KA++IGM +T Y N +GL    D           +TA D   L
Sbjct: 130 AKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHKEPPIENISTAHDIVTL 189

Query: 198 GILLRKNF-PQYYKYFSIRKF--RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
           G  +  ++  Q  +  +++ +    ++    N N LL  +  +DGIKTGYT N+G+ +  
Sbjct: 190 GKYMYDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVDGIKTGYTDNAGYCLAF 249

Query: 255 SL-------RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSST 307
           S+         ++  ++ VV+G    + R   +  L+     K     ++   K ++  T
Sbjct: 250 SMMIPKDAKNERNHRLIGVVLGDGNKKNRISSSASLLKYG--KDNFHSKKIAHKGDIIET 307

Query: 308 SLKKSLMIKKLKRTYSQF 325
                +   K+K    + 
Sbjct: 308 PCVDGIDDFKIKVKVDKD 325


>gi|320101740|ref|YP_004177331.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Isosphaera
           pallida ATCC 43644]
 gi|319749022|gb|ADV60782.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Isosphaera
           pallida ATCC 43644]
          Length = 702

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 64/273 (23%), Positives = 117/273 (42%), Gaps = 27/273 (9%)

Query: 43  SMASELHAKP---KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKL 98
             A++  A P     + + ID +  ++ G ++ E P   AS TK+MT +++ + L +   
Sbjct: 420 PAANDPTAVPFVTARAWVAIDADTGRVLGGREPERPLDMASTTKIMTAHLVLKELAAHPE 479

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS------ 152
             +  +  S  AA    S   ++E       + +  L+  S ND + A  E         
Sbjct: 480 ARDEVVTFSARAAATPGSSSEVREGERVRVGELLYGLMLPSGNDAAVALAEQFGQRLAAR 539

Query: 153 -GSE-----KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
            GS+     + F   M+ +A+ +G+  T + N  GL   N   +A D A L  +  +N P
Sbjct: 540 DGSDGLDPLEAFVAAMNREAQALGLSATRFVNPHGLTAPNHQASALDLARLTRVALEN-P 598

Query: 207 QYYKYFSIR---------KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
           ++    + R         + + R  + +N N+LL K+    G+KTG T ++G  +V   +
Sbjct: 599 EFAALVATRRRAARLIDGEGKGRTIVWSNTNELL-KIEGFAGVKTGTTSSAGACLVALGQ 657

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
             +  ++ VV+G   S  R   A  L      +
Sbjct: 658 QGERRVIVVVLGSAASASRYADARNLFRWAFHQ 690



 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 48/149 (32%), Gaps = 21/149 (14%)

Query: 63  KNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL---Y 119
             +    + D P   ASL K   L   +  + +  L L T + +         + +   +
Sbjct: 64  TGETFAHRADAPMPTASLIKFPLLIEAYRRVATGALDLKTPVTLHDED-KVPGAGILTYH 122

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY--- 176
             + T       +  +I  S N  +        G        ++ +  ++G++ T +   
Sbjct: 123 FSQGTTIPLRDVLRLMIVYSDNTATN-LALDAVG-----LDAVNAEMARLGLKRTKFHSK 176

Query: 177 -------KNASGLHDKN-QITTARDQAIL 197
                   +  G  +    +TTA +   L
Sbjct: 177 VYRRDTSIDPEGSREFGLGVTTAAEMITL 205


>gi|16801957|ref|NP_472225.1| hypothetical protein lin2897 [Listeria innocua Clip11262]
 gi|16415432|emb|CAC98123.1| lin2897 [Listeria innocua Clip11262]
          Length = 445

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 69/310 (22%), Positives = 136/310 (43%), Gaps = 37/310 (11%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEPRY-PAS 79
           +  I +M   L +S  ++S  +   A+       ++I I+ +  ++   K  +     AS
Sbjct: 7   KTGIVIMAASLAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIAS 66

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILAL 135
           +TKMM  Y++ E +   +L  + ++ +S+ A       + S + L+    ++ ++   A+
Sbjct: 67  MTKMMDEYLLLEAIDKGQLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYSVQELYEAM 126

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------- 186
              SAN  + A  E I+GSEK+F  LM+ KA+++ + +  + N++GL++++         
Sbjct: 127 AIYSANGAAIAISEKIAGSEKEFVDLMNKKAEELKLGDHQFVNSTGLNNEDLKGGQQVGG 186

Query: 187 ----QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM--- 234
                  TAR  A L   L  ++P   K  S  K  +R        ++N N LL  +   
Sbjct: 187 PTDENKMTARGMAKLAKHLIDDYPDVLKTASTTKKEFRKGTSDQIDMSNWNWLLPGLIYG 246

Query: 235 -HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM------PTSQERDQKALELITSF 287
              +DG+KTG T  +G  +  +       +V VV+          +  R  +  +++   
Sbjct: 247 RKGVDGLKTGTTDYAGMCLTATAVQDGMRVVTVVLHANGGGKGEHTSARFDETNKMLDYA 306

Query: 288 LEKKTLKHQQ 297
                +K  Q
Sbjct: 307 FNNFKVKEVQ 316


>gi|260682216|ref|YP_003213501.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196]
 gi|260685815|ref|YP_003216948.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291]
 gi|260208379|emb|CBA60888.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196]
 gi|260211831|emb|CBE02232.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291]
          Length = 414

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 70/310 (22%), Positives = 136/310 (43%), Gaps = 24/310 (7%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           + + ++  I      + + A          ++++ID    ++   K  DE    ASL+KM
Sbjct: 11  KQLTILALIFIFITPVFAFADTPPVPNSSRAALLIDQETKRILFEKNIDEKMPLASLSKM 70

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT  +  E +   ++     + + K+ A+   S   LK+    +  + +  L+  S ND 
Sbjct: 71  MTFLLAIEAVDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGELMQGLMLVSGNDA 130

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---DKNQ-------ITTARD 193
           + A  + I  +EK F  +M+ KA++IGM +T Y N +GL    D          ++TA D
Sbjct: 131 AIAIAKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHKEPPIENMSTAHD 190

Query: 194 QAILGILLRKNF-PQYYKYFSIRKF--RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
              LG  +  ++  Q  +  +++ +    ++    N N LL  +  +DGIKTGYT N+G+
Sbjct: 191 IVTLGKYMYDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVDGIKTGYTDNAGY 250

Query: 251 NIVTSL-------RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
            +  S+         ++  ++ VV+G    + R   +  L+     K     ++   K +
Sbjct: 251 CLAFSMMVPKDAKNERNHRLIGVVLGDGNKKNRISSSATLLKYG--KDNFHSKKIAHKGD 308

Query: 304 LSSTSLKKSL 313
           +  T     +
Sbjct: 309 IIETPCVDGI 318


>gi|311070657|ref|YP_003975580.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942]
 gi|310871174|gb|ADP34649.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942]
          Length = 441

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 75/312 (24%), Positives = 141/312 (45%), Gaps = 38/312 (12%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKY--------SSIVIDVNKNQMTGFKQDE 73
           + I++  QLM     L++I+  +A    AK           ++I+I+ +  ++   K  +
Sbjct: 1   MNIKKCKQLMMSFFVLTLIVTCLAPMSRAKAASDPIDVNASAAIMIEASSGKILYSKNAD 60

Query: 74  PRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKTAATQNPSKLYLKEKTYFTT 128
            R P AS+TKMMT Y++ E +   K+  +        V + +   + S + L++   +T 
Sbjct: 61  KRLPIASMTKMMTEYLLLEAIDEGKVKWDQTYTPDDYVYEISQDNSLSNVPLRKDGKYTV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----- 183
           ++   A    SAN  + A  E ++GSE KF   M+ KAK++G+ N  + NA+GL      
Sbjct: 121 KELYQATAIYSANAAAIALAEVMAGSETKFVDKMNAKAKELGLTNFKFVNATGLENKDLH 180

Query: 184 ---------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNK 229
                    D+    +A+D AIL   L  ++P+     SI K ++R        + N N 
Sbjct: 181 GKQPEGTSVDEESEVSAKDMAILADRLITDYPEILDTASIAKTKFREGTDDEMDMPNWNF 240

Query: 230 LLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS--QERDQKALEL 283
           +L         +DG+KTG T ++G    ++       ++ VV+    +    R  +  ++
Sbjct: 241 MLKGLVSEYKGVDGLKTGSTDSAGSCFTSTAERNGMRVITVVLNAKGNIHTGRFDETKKM 300

Query: 284 ITSFLEKKTLKH 295
           +    +  ++K 
Sbjct: 301 LNYAFDNFSMKE 312


>gi|126698096|ref|YP_001086993.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile 630]
          Length = 414

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 70/310 (22%), Positives = 136/310 (43%), Gaps = 24/310 (7%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           + + ++  I      + + A          ++++ID    ++   K  DE    ASL+KM
Sbjct: 11  KQLTILALIFIFITPVFAFADTPPVPNSSRAALLIDQETKRILFEKNIDEKMPLASLSKM 70

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT  +  E +   ++     + + K+ A+   S   LK+    +  + +  L+  S ND 
Sbjct: 71  MTFLLAIEAVDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGELMQGLMLVSGNDA 130

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---DKNQ-------ITTARD 193
           + A  + I  +EK F  +M+ KA++IGM +T Y N +GL    D          ++TA D
Sbjct: 131 AIAIAKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHKEPPIENMSTAHD 190

Query: 194 QAILGILLRKNF-PQYYKYFSIRKF--RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
              LG  +  ++  Q  +  +++ +    ++    N N LL  +  +DGIKTGYT N+G+
Sbjct: 191 IVTLGKYMYDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVDGIKTGYTDNAGY 250

Query: 251 NIVTSL-------RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
            +  S+         ++  ++ VV+G    + R   +  L+     K     ++   K +
Sbjct: 251 CLAFSMMVPKDAKNERNHRLIGVVLGDGNKKNRISSSATLLKYG--KDNFHSKKIAHKGD 308

Query: 304 LSSTSLKKSL 313
           +  T     +
Sbjct: 309 IIETPCVDGI 318


>gi|254974115|ref|ZP_05270587.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-66c26]
 gi|255091514|ref|ZP_05320992.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CIP
           107932]
 gi|255313242|ref|ZP_05354825.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-76w55]
 gi|255515932|ref|ZP_05383608.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-97b34]
 gi|255649025|ref|ZP_05395927.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-37x79]
 gi|306519141|ref|ZP_07405488.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-32g58]
          Length = 409

 Score =  225 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 70/310 (22%), Positives = 136/310 (43%), Gaps = 24/310 (7%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           + + ++  I      + + A          ++++ID    ++   K  DE    ASL+KM
Sbjct: 6   KQLTILALIFIFITPVFAFADTPPVPNSSRAALLIDQETKRILFEKNIDEKMPLASLSKM 65

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT  +  E +   ++     + + K+ A+   S   LK+    +  + +  L+  S ND 
Sbjct: 66  MTFLLAIEAVDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGELMQGLMLVSGNDA 125

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---DKNQ-------ITTARD 193
           + A  + I  +EK F  +M+ KA++IGM +T Y N +GL    D          ++TA D
Sbjct: 126 AIAIAKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHKEPPIENMSTAHD 185

Query: 194 QAILGILLRKNF-PQYYKYFSIRKF--RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
              LG  +  ++  Q  +  +++ +    ++    N N LL  +  +DGIKTGYT N+G+
Sbjct: 186 IVTLGKYMYDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVDGIKTGYTDNAGY 245

Query: 251 NIVTSL-------RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
            +  S+         ++  ++ VV+G    + R   +  L+     K     ++   K +
Sbjct: 246 CLAFSMMVPKDAKNERNHRLIGVVLGDGNKKNRISSSATLLKYG--KDNFHSKKIAHKGD 303

Query: 304 LSSTSLKKSL 313
           +  T     +
Sbjct: 304 IIETPCVDGI 313


>gi|196230570|ref|ZP_03129432.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chthoniobacter flavus
           Ellin428]
 gi|196225500|gb|EDY20008.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chthoniobacter flavus
           Ellin428]
          Length = 355

 Score =  225 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 123/244 (50%), Gaps = 12/244 (4%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
             + +IV+D    ++   K  D P++PAS TK+MT  ++ E        L+ ++      
Sbjct: 84  AAWGAIVLDELTGKVLYEKNADAPQFPASCTKIMTALLVIEEGD-----LDHEVVCDVED 138

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           +    S L LK   +FT  Q +  L+ +SANDV+ A G   +GS + FA  M+ +A+++G
Sbjct: 139 SKVGESSLNLKPDQHFTRRQMLYGLMLKSANDVAHALGRDNAGSIEAFAEKMNRRARELG 198

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-NRI---ITN 226
            QNT + N +GLH+    TT RD A++        P + +    R + +  N +   + N
Sbjct: 199 AQNTHFVNPNGLHNPEHYTTPRDLALIARAAMHQ-PFFRQVVGTRDYNWNVNGVVDPLHN 257

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           HN+LL +     G+KTGYT  +   +V+S    +  +++VVM           ++ L++ 
Sbjct: 258 HNRLLERFPGCTGVKTGYTIPAQQVLVSSAMRGNREVISVVMHTDKPGI-WNDSMLLLSY 316

Query: 287 FLEK 290
            L++
Sbjct: 317 GLDR 320


>gi|262278233|ref|ZP_06056018.1| D-Ala-D-Ala-carboxypeptidase penicillin-binding protein
           [Acinetobacter calcoaceticus RUH2202]
 gi|262258584|gb|EEY77317.1| D-Ala-D-Ala-carboxypeptidase penicillin-binding protein
           [Acinetobacter calcoaceticus RUH2202]
          Length = 271

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 112/238 (47%), Gaps = 9/238 (3%)

Query: 30  LMGKILFLSIIMISM--ASELHAKP----KYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
            +      SI   ++  A+ L+  P      +  ++D    Q+         R PASLTK
Sbjct: 4   FLSLFTLFSIFCTTLTNAALLNIAPESVEAAAWTIVDTQSGQIIAEHNSHVQRAPASLTK 63

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSK--TAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           MM  YI  + +++ KL     I  +   +    + S++YLK     + +Q +  LI  SA
Sbjct: 64  MMVAYIALKEIKAGKLKKEEIITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIVMSA 123

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND +    E ISG    F   M+ +A+ +GM++T + N  G+   +  TTA D ++LG  
Sbjct: 124 NDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPPGITMPDHYTTAHDLSLLGQA 183

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
           L K  P+Y  Y  +  F Y  R     N  L    ++DG+KTGYT+ +G+N+  +   
Sbjct: 184 LIKQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTASR 241


>gi|226330783|ref|ZP_03806301.1| hypothetical protein PROPEN_04704 [Proteus penneri ATCC 35198]
 gi|225201578|gb|EEG83932.1| hypothetical protein PROPEN_04704 [Proteus penneri ATCC 35198]
          Length = 239

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 61/214 (28%), Positives = 110/214 (51%), Gaps = 14/214 (6%)

Query: 31  MGKILFLSIIMISM----ASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMT 85
           MG +L +S    ++    A ++ AK   S +++D N  ++    K DE   PASLTK+M+
Sbjct: 16  MGLLLIISSPSFAVNNPVAPQIEAK---SYVLMDYNSGKILASEKPDERLDPASLTKIMS 72

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRS 139
            Y++ + ++  ++  +  + V + A        +  S ++LK             ++ +S
Sbjct: 73  SYVVGQAIKEGRMSPDDMVIVGRNAWATGNPVLKGSSLMFLKPGDQVKVIDLNRGMVIQS 132

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND S A  E I+GS++ F  LM++ AK +G++NT +K   GL  + Q TTA+D A+L  
Sbjct: 133 GNDASIALAEHIAGSQETFVDLMNSYAKNLGLKNTYFKTVHGLDSEGQYTTAQDMALLTA 192

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
            + ++ P  Y+    ++F + N    N N+LL  
Sbjct: 193 AMIRDVPSEYEIHKEKEFTFNNIRQPNRNRLLWN 226


>gi|255099621|ref|ZP_05328598.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-63q42]
 gi|328887546|emb|CAJ67349.2| D-alanyl-D-alanine carboxypeptidase, S11 peptidase family
           [Clostridium difficile]
          Length = 409

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 70/310 (22%), Positives = 136/310 (43%), Gaps = 24/310 (7%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           + + ++  I      + + A          ++++ID    ++   K  DE    ASL+KM
Sbjct: 6   KQLTILALIFIFITPVFAFADTPPVPNSSRAALLIDQETKRILFEKNIDEKMPLASLSKM 65

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT  +  E +   ++     + + K+ A+   S   LK+    +  + +  L+  S ND 
Sbjct: 66  MTFLLAIEAVDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGELMQGLMLVSGNDA 125

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---DKNQ-------ITTARD 193
           + A  + I  +EK F  +M+ KA++IGM +T Y N +GL    D          ++TA D
Sbjct: 126 AIAIAKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHKEPPIENMSTAHD 185

Query: 194 QAILGILLRKNF-PQYYKYFSIRKF--RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
              LG  +  ++  Q  +  +++ +    ++    N N LL  +  +DGIKTGYT N+G+
Sbjct: 186 IVTLGKYMYDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVDGIKTGYTDNAGY 245

Query: 251 NIVTSL-------RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
            +  S+         ++  ++ VV+G    + R   +  L+     K     ++   K +
Sbjct: 246 CLAFSMMVPKDAKNERNHRLIGVVLGDGNKKNRISSSATLLKYG--KDNFHSKKIAHKGD 303

Query: 304 LSSTSLKKSL 313
           +  T     +
Sbjct: 304 IIETPCVDGI 313


>gi|229007696|ref|ZP_04165288.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4]
 gi|228753564|gb|EEM03010.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4]
          Length = 426

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 71/341 (20%), Positives = 152/341 (44%), Gaps = 31/341 (9%)

Query: 22  IYIQRNIQLMGKIL--FLSI-IMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           +Y+++ + ++   L  F S+ +  S A E       ++I+ D +  ++   +  DE    
Sbjct: 1   MYMRKILSILLVFLLSFSSLGVTTSHAEEKIHIEAAAAILFDADTGKILHEQNPDELLAI 60

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGIL 133
           AS++K++ +Y + E ++  K+  +T++ +S  A         S +  ++   +T ++   
Sbjct: 61  ASMSKLIVVYSVLEAIKEGKITWDTKVNISDYAYEISRNNEFSNVPFEKGRQYTVKELYH 120

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN------- 186
           ++I  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ +       
Sbjct: 121 SIIIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHPE 180

Query: 187 -------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RIITNHNKLLNK- 233
                     +ARD  IL   +   +P+  +    R   + +       + N N +L   
Sbjct: 181 GTDPNGENSLSARDMGILSKTIITKYPEILEDTKQRFRNFPDNHPKPIRMENWNWMLPGA 240

Query: 234 ---MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                  DG+KTG +  +G+    S +  D  +++V++   +  ER  ++ ELI      
Sbjct: 241 AFAYEGTDGLKTGSSDTAGYGFTISAKRGDLRLISVIIKTKSMDERFTESRELIDYGFNN 300

Query: 291 KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
              +  +  + + +S     +  +  K ++  +   K  +K
Sbjct: 301 FEKQKLKIDKNNTISVVKGTEDTVTVKPEKEITVITKKGSK 341


>gi|311068836|ref|YP_003973759.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942]
 gi|310869353|gb|ADP32828.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942]
          Length = 383

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 75/286 (26%), Positives = 125/286 (43%), Gaps = 16/286 (5%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           R ++    I+ ++  +++   E  A         S+IVID    ++   K   E R  AS
Sbjct: 2   RFLKKAAVIILVTAFLLTFIKEHKAYAAINVSAKSAIVIDGASGRVLFAKDEHEKRRIAS 61

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MT  +  E  +     +   + VS  A     S +YLKE      +  +  L+ RS
Sbjct: 62  ITKIMTAVLAIESGK-----MEETVTVSANAVRTEGSAIYLKEGQKVKLKDLVYGLMLRS 116

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILG 198
            ND + A  E + GS   F  +M+ KA++IGM+NT ++N  GL D +N  +TA D AIL 
Sbjct: 117 GNDAAAAIAEHVGGSLGGFVYMMNQKAEQIGMENTRFQNPHGLDDHENHYSTAYDMAILT 176

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNR--IITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTS 255
               K    Y      + ++      +  N NKLL        G KTGYT+ +   +V++
Sbjct: 177 KYAMK-LKDYQTISGTKVYKAETMESVWKNKNKLLTGLYQYSTGGKTGYTKLAKRTLVST 235

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRK 301
                  ++AV +  P   +      E + +  +   +  +    K
Sbjct: 236 ASKDGTDLIAVTINDPNDWDDHMNMFEYVFNHYKTYIVAKKGDIPK 281


>gi|228996680|ref|ZP_04156317.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
 gi|228762999|gb|EEM11909.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
          Length = 361

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 69/282 (24%), Positives = 131/282 (46%), Gaps = 16/282 (5%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYL 93
           +  S+I I   ++++    +++I+++ +  ++   K + E +  AS+TK+MT  +  E  
Sbjct: 1   MCASVIPIHTYAQMNDVSAHNAILMEEHSGRVLYGKLEHESQKIASITKIMTALLAAESG 60

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           +     +   +P+S  A     S +YL+       E  +  L+ RS ND + A  E + G
Sbjct: 61  K-----MKEVVPISDKAVRVEGSAIYLQPGKKVPLEDLVYGLMLRSGNDAAQAIAENVGG 115

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRKNFPQYYKYF 212
           S + F  LM+ KAK+IGM++T + N  GL  D    ++A D A+L      N   + K F
Sbjct: 116 SIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGTHYSSAYDMALLTRYAMGN-ETFRKIF 174

Query: 213 SIRKFRYR--NRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
             + ++ +  +    N +KL+   +    G KTG+T+ +G  +VT+       ++ V + 
Sbjct: 175 GTKTYQSKMWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTLN 234

Query: 270 MPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
                +     + L     ++  L   +  R+  LS    KK
Sbjct: 235 ASNDWD---DHMYLFDQGFKQYEL--TKVLRQGALSGLQEKK 271


>gi|284042207|ref|YP_003392547.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Conexibacter
           woesei DSM 14684]
 gi|283946428|gb|ADB49172.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Conexibacter
           woesei DSM 14684]
          Length = 326

 Score =  225 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 114/247 (46%), Gaps = 18/247 (7%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           KP  + +++D    ++    + E R P AS+TKMMT  ++ E  + +       +P++  
Sbjct: 84  KPPRAGLLVDAGSGRVLWRLEAERRLPIASVTKMMTALLVAERTKPR-----EPVPITPQ 138

Query: 110 AATQNPSKLY-LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
           A     S +  L       TE  +  L+  S ND + A  + +SGS  +F  LM+ +A++
Sbjct: 139 AVAYTGSGVGMLPVGRRVQTETLLYGLMLPSGNDAAIALAQHVSGSVARFVRLMNARARE 198

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR------KFRYRNR 222
           +G+  T + + SG+ D    + A D A+LG  L +   +  +             R    
Sbjct: 199 LGLTCTRFASPSGIVDSGNWSCAPDLALLGRELLR-HRRLARVVRTPLAVMPLPIRGGRV 257

Query: 223 IITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
            + NHN LL  +   ++GIKTGYT  +G   V S+R     ++ V++  P      ++A 
Sbjct: 258 WLANHNPLLRMRYAGVEGIKTGYTEAAGRCFVASVRRDGRRLIVVLLNSPDPG---RQAR 314

Query: 282 ELITSFL 288
            L+ +  
Sbjct: 315 RLLDAGF 321


>gi|228994104|ref|ZP_04154004.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
           12442]
 gi|228765556|gb|EEM14210.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
           12442]
          Length = 425

 Score =  225 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 70/341 (20%), Positives = 152/341 (44%), Gaps = 31/341 (9%)

Query: 22  IYIQRNIQLMGKIL--FLSI-IMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           +Y+++ + ++   L  F S+ +  S A E       ++I+ D +  ++   +  DE    
Sbjct: 1   MYMRKILSILLVFLLSFSSLGVTTSHAEEKIHIEAAAAILFDADTGKILHEQNPDELLAI 60

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGIL 133
           AS++K++ +Y + E ++  K+  +T++ +S  A         S +  ++   +T ++   
Sbjct: 61  ASMSKLIVVYSVLEAIKEGKITWDTKVNISDYAYEISRNNEFSNVPFEKGLQYTVKELYH 120

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN------- 186
           +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ +       
Sbjct: 121 SIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHPE 180

Query: 187 -------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RIITNHNKLLNK- 233
                     +ARD  IL   +   +P+  +    R   + +       + N N +L   
Sbjct: 181 GTDPNGENSLSARDMGILSRTIITKYPEILEDTKQRFRNFPDNHPKPIRMENWNWMLPGA 240

Query: 234 ---MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                  DG+KTG +  +G+    S +  D  +++V++   +  ER  ++ ELI      
Sbjct: 241 AFAYEGTDGLKTGSSDTAGYGFTISAKRGDLRLISVIIKTKSMDERFTESRELIDYGFNN 300

Query: 291 KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
              +  +  + + +S    K+  +    ++  +   K  +K
Sbjct: 301 FEKQKLKIDKNNTISVVKGKEDTVTVTPEKEITVISKKGSK 341


>gi|15965358|ref|NP_385711.1| putative penicillin-binding precursor (D-alanyl-D-alanine
           carboxypeptidase fraction A) transmembrane protein
           [Sinorhizobium meliloti 1021]
 gi|307312733|ref|ZP_07592364.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           BL225C]
 gi|307317217|ref|ZP_07596658.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           AK83]
 gi|15074538|emb|CAC46184.1| Putative penicillin-binding precursor (D-alanyl-D-alanine
           carboxypeptidase fraction A) transmembrane protein
           [Sinorhizobium meliloti 1021]
 gi|306897305|gb|EFN28050.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           AK83]
 gi|306899458|gb|EFN30090.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
           BL225C]
          Length = 384

 Score =  225 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 131/291 (45%), Gaps = 15/291 (5%)

Query: 28  IQLMGKILFLSIIM----ISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           ++ +  + FL+ ++    ++       K K    ++D     +   +  D P  PASL K
Sbjct: 3   MKWLAVVGFLAAVVSGQAVAQTPAFDTKAKQIY-LVDAETGTVLFSRDEDAPVPPASLAK 61

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALIT 137
           +M + ++FE L   +L   T   VS+ A          S ++   K+       I     
Sbjct: 62  LMAMEVVFEALDKGELTPETSFEVSEHAWRTGGAPSGTSTMFAAIKSRIRVADLIQGATV 121

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           + AND      E ++GSE  FA LM+ +A+ +G+    +KNA+GL       T R+   L
Sbjct: 122 QLANDACIVLAEGMAGSEAAFAELMTKRARDLGLPVATFKNATGLPHPENKVTMRELVAL 181

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              L +  P YY+ +S  +F +   +  N N L+     +DG+ TG+    GF++  S++
Sbjct: 182 TRHLYEAHPDYYRLYSQPEFEWNKILQRNKNPLIAANVGVDGLATGFAEGFGFSLAVSMQ 241

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITS----FLEKKTLKHQQTHRKDNL 304
             D  +   + G+ + +ER +++  ++      F +++     +T  + ++
Sbjct: 242 RGDRRVYLAMGGLESEKERIEESRRVLDWAMTAFEKRRIFADGETIGEASV 292


>gi|291561741|emb|CBL40540.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
           SS3/4]
          Length = 514

 Score =  225 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 122/290 (42%), Gaps = 36/290 (12%)

Query: 29  QLMGKILFLSIIM-ISMASELHAKPKY---------SSIVIDVNKNQMTGFKQ-DEPRYP 77
           +++   L L++I+        +A  ++           I++D+N   +   K   EP YP
Sbjct: 3   RILSIFLCLTLILGFCPGQTAYAAAEWPSEISISSDGGILMDINSGAVLFEKNSHEPYYP 62

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILA 134
           AS+TK++T  I+ E        L+  +  S TA      N S L  +     +    + A
Sbjct: 63  ASITKILTALIVIE-----NCGLDETVTFSNTAVNSLEPNSSILGARAGDTLSVRDCLYA 117

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           L+ +SAN+V+ A  E  +GS   FA  M+ K  ++G  ++ + N SGL+D N   +A D 
Sbjct: 118 LLLQSANEVANALAEHCAGSIDAFAEKMNEKTAELGCTDSHFANPSGLNDPNHYVSAYDM 177

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYR---------NRIITNHNKLLNK-----MHNIDGI 240
           A++      N P + +  S   +                  H+++L +          G 
Sbjct: 178 ALIAKAAFNN-PTFVEVDSTTYYDVPAGKLKQYPDGWRYYAHHRMLRRNDSLYYDGAIGG 236

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           KTGYT  +G  +VT        ++AVV+    +   D KA  L     + 
Sbjct: 237 KTGYTLLAGNTLVTCAERDGMKLIAVVLNGHQTHYSDTKA--LFDYGFKN 284


>gi|194367412|ref|YP_002030022.1| Serine-type D-Ala-D-Ala carboxypeptidase [Stenotrophomonas
           maltophilia R551-3]
 gi|194350216|gb|ACF53339.1| Serine-type D-Ala-D-Ala carboxypeptidase [Stenotrophomonas
           maltophilia R551-3]
          Length = 298

 Score =  225 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 113/249 (45%), Gaps = 12/249 (4%)

Query: 45  ASELHAKP-KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
             ++ A P   SSI I+ +  ++         R PASLTK+MT Y  +  L+      + 
Sbjct: 35  PPDMPAPPTALSSITIEASTFEVIHQDNAGVARQPASLTKLMTAYAAYACLEEGGRTWDE 94

Query: 103 QIPV---SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            + +          + +++ L      +  + +  L+  S ND + A    + GS+  F 
Sbjct: 95  AVTIAAEDVHVVADDETRMGLVPGEKVSLARLLEGLMIVSGNDAALAIARHLDGSQSAFL 154

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             M+  A+++G+++T + + SG+   +  ++ARD A+L   L  + PQ     + R F +
Sbjct: 155 DRMNQHARQLGLRSTWFASVSGITTPHHASSARDMAVLAACLLNDHPQILAVTAQRAFAH 214

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY------KDDPIVAVVMGMPTS 273
            +    N N LL     +DG+KTGYT+ +GF +  +             ++ VV+G  + 
Sbjct: 215 GSFSRNNQNALLG-DDGVDGLKTGYTQAAGFCLAATACQPVPGRAHPVRLITVVLGSDSR 273

Query: 274 QERDQKALE 282
             RD  A E
Sbjct: 274 DARDALARE 282


>gi|313616580|gb|EFR89415.1| D-alanyl-D-alanine carboxypeptidase DacA [Listeria innocua FSL
           S4-378]
          Length = 433

 Score =  225 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 73/333 (21%), Positives = 140/333 (42%), Gaps = 35/333 (10%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
           FL     + A+E       ++I I+ +  ++   K  +     AS+TKMM  Y++ E + 
Sbjct: 10  FLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAID 69

Query: 95  SKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             +L  + ++ +S+ A       + S + L+    ++ ++   A+   SAN  + A  E 
Sbjct: 70  KGQLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYSVQELYEAMAIYSANGAAIAISEK 129

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-------------QITTARDQAIL 197
           I+GSEK+F  LM+ KA+++ + +  + N++GL++++                TAR  A L
Sbjct: 130 IAGSEKEFVDLMNKKAEELKLGDHQFVNSTGLNNEDLKGGQQVGGPTDENKMTARGMAKL 189

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM----HNIDGIKTGYTRNS 248
              L  ++P   K  S  K  +R        ++N N LL  +      +DG+KTG T  +
Sbjct: 190 AKHLIDDYPDVLKTASTTKKEFRKGTSDQIDMSNWNWLLPGLIYGRKGVDGLKTGTTDYA 249

Query: 249 GFNIVTSLRYKDDPIVAVVMGM------PTSQERDQKALELITSFLEKKTLKHQQT--HR 300
           G  +  +       +V VV+          +  R  +  +++        +K  Q    +
Sbjct: 250 GMCLTATAVQDGMRVVTVVLHANGGGKGEHTSARFDETNKMLDYAFNNFKVKEVQKAGSK 309

Query: 301 KDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAH 333
             N S+ ++ K         T    K +  K  
Sbjct: 310 VKNPSTIAVDKGKEDTVGLITKDAVKLVVPKND 342


>gi|328909969|gb|AEB61565.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Bacillus amyloliquefaciens LL3]
          Length = 418

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 64/267 (23%), Positives = 127/267 (47%), Gaps = 30/267 (11%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP----VS 107
             ++I+I+ +  ++   K  + R P AS+TKMMT Y++ E ++  K+  +        V 
Sbjct: 16  ASAAIMIEASSGKILYSKNADKRLPIASMTKMMTEYLLLEAIKEGKVKWDQTYTPDDYVY 75

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
           + +   + S + L++   +T ++   A+   SAN  + A  E ++G+E KF   M+ KAK
Sbjct: 76  EISQDNSLSNVPLRKDGKYTVKELYQAMAIYSANGAAIAVAEILAGTETKFVAKMNAKAK 135

Query: 168 KIGMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFS 213
           ++GM N  +KN++GL +++                 +A+D A+L   L  ++P+  K  S
Sbjct: 136 ELGMTNYDFKNSTGLVNEDLHGKQPQGEGVKEESEVSAKDMALLADRLITDYPEVLKTTS 195

Query: 214 IRKFRYRNRI-----ITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           I K ++R        + N N +L         +DG+KTG T ++G    ++ +     ++
Sbjct: 196 IAKTKFRAGTDDEMDMPNWNFMLKGLVSEYPGVDGLKTGSTDSAGSCFTSTAQRNGMRVI 255

Query: 265 AVVMGMPTS--QERDQKALELITSFLE 289
            VV+    +    R  +  +++     
Sbjct: 256 TVVLNAKGNLHTGRFDETKKMLDYAFN 282


>gi|312876024|ref|ZP_07736013.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311797222|gb|EFR13562.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 387

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/278 (25%), Positives = 122/278 (43%), Gaps = 16/278 (5%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYS---SIVIDVNKNQMTGFKQ-DEPRYP 77
           +  +  + +   I+  +   I  A+E    P+ S   +I I+    ++   K  D     
Sbjct: 14  MKARAFVLVFALIITTTFGKICYANEKKNLPQISSKSAIAIEWVTRKILFEKNKDLKLPM 73

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK+MT  ++ E        +N +I +   A     S +YL++         +  L+ 
Sbjct: 74  ASTTKIMTAILVLENCD-----VNKEIEIPPQAVGVPGSSMYLEKGEKLKIIDLLYGLML 128

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND + A     +G   +F  LM+ KAK++G+ NT++ +  GL      TTA D A L
Sbjct: 129 SSGNDAAVALAIATAGDVIRFVNLMNKKAKELGLSNTVFSSPHGLEQGEHYTTAHDLAKL 188

Query: 198 GILLRKNFPQYYKYFSI------RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
                +N P + +             R  NRI+ N NK+L      +G+KTG+T+ +G  
Sbjct: 189 AAYAMRN-PIFRQIVKTTEKEVPWTTRPYNRILKNKNKMLRLYPGAEGVKTGFTKKAGRC 247

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           +VTS    D  ++ VV+  P      +K L+   S  +
Sbjct: 248 LVTSACRDDFRVICVVLNAPDMWNDTRKILDYCYSNFK 285


>gi|172056057|ref|YP_001812517.1| Serine-type D-Ala-D-Ala carboxypeptidase [Exiguobacterium sibiricum
           255-15]
 gi|171988578|gb|ACB59500.1| Serine-type D-Ala-D-Ala carboxypeptidase [Exiguobacterium sibiricum
           255-15]
          Length = 415

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 79/302 (26%), Positives = 138/302 (45%), Gaps = 21/302 (6%)

Query: 24  IQRNIQLMGKILFLSIIMISMA--SELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASL 80
           ++R   L   +L L+     M   +E       S I++D    ++    + D    PAS+
Sbjct: 1   MKRLFTLFLSVLILTAGGQPMTGHAETPDIQAESYIMVDAVTGKILLAEQADLALPPASM 60

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYFTTEQGILALI 136
           TK+MTLY++ + ++ KKL  N  +  S+     A T   ++L ++ KT +T  +   A  
Sbjct: 61  TKLMTLYLVRQQIEQKKLSWNQTVRPSEKVLKLAKTPGIARLPIR-KTTYTIRELYDAAF 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN------QITT 190
            +SAND +    E ++G+EK+F   M+  A  +GM++T Y NASGL   +       + T
Sbjct: 120 IKSANDAAVLLAEVMAGTEKQFVERMNETAVALGMEDTEYANASGLDAVDATLPGTNLMT 179

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK----MHNIDGIKTGYTR 246
           A D ++L I   +++P                 + N NK+L +       + G+KTG T 
Sbjct: 180 AMDISLLIIRYIQDYPDVLDVTKRSFITINGEKVENSNKMLPRQPYAYSGMRGMKTGTTD 239

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT---SFLEKKTLKHQQTHRKDN 303
            +G+   +     +  +V+VVM   + + R  +  +L+    SF E  T   +    K  
Sbjct: 240 LAGYCFASVATRGNLTLVSVVMRTTSDKARFAETKKLLDYGFSFFEPLTYYGKGEQIKGV 299

Query: 304 LS 305
           L 
Sbjct: 300 LP 301


>gi|302388530|ref|YP_003824352.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           saccharolyticum WM1]
 gi|302199158|gb|ADL06729.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           saccharolyticum WM1]
          Length = 519

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 133/322 (41%), Gaps = 35/322 (10%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP------KYSSIVIDVNKNQMTGFKQDEPRY- 76
           I++       +LFL       +      P         +I++D +   +   +    +Y 
Sbjct: 5   IKKFSIFFLCLLFLVSSNTETSLAAEDWPSGISVQAQGAILMDADTGTVLWGQNIHNQYF 64

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGIL 133
           PAS+TK+MT  ++ E        L+  +  S  A        S   + E    + +  + 
Sbjct: 65  PASITKVMTALLVIE-----NCSLDETVTFSHNAVYNVESGSSNAGINEGDKLSVKDCLY 119

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           AL+ +SAN+ + A  E ++GS + FA +M+ +AK++G  NT + N SGL++    T+  D
Sbjct: 120 ALLLKSANESANALAEHVAGSTEAFADMMNTRAKELGCTNTHFSNPSGLNNPEHYTSPYD 179

Query: 194 QAILGILLRKNFPQYYKYFSIRKFR-------YRNRIITNHNKLLNK-----MHNIDGIK 241
            A++      N P + +  S   ++            I   +K++ K        I G K
Sbjct: 180 MALIARAAFNN-PVFGEIDSTTYYKLPPNSINKEGLTIYPGHKMMRKSTPYYYPGIVGGK 238

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK----KTLKHQQ 297
           TGYT  +G  +VT        ++ +++   T Q        L+    +     K   H++
Sbjct: 239 TGYTTLAGNTLVTCAERNGLKLITIILKGSTPQY-WSDTKNLLNFGFDNFVSLKAADHEK 297

Query: 298 THRKDNLSSTSLKKSLMIKKLK 319
           T+   +++S      L I K +
Sbjct: 298 TYS--SITSDLSFSGLTITKPE 317


>gi|319654383|ref|ZP_08008470.1| hypothetical protein HMPREF1013_05090 [Bacillus sp. 2_A_57_CT2]
 gi|317393882|gb|EFV74633.1| hypothetical protein HMPREF1013_05090 [Bacillus sp. 2_A_57_CT2]
          Length = 389

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 130/293 (44%), Gaps = 15/293 (5%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTL 86
           + +    LF        AS+       S+I+ID N  ++   K+  E  YPASLTK+ T 
Sbjct: 6   VLIFIASLFSGFQKTIHASDSPVVSSGSAILIDANTGEILFEKKATEEMYPASLTKIATA 65

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
               E     K +LN  + +         +++YL+E    +  + I  L+  S ND   A
Sbjct: 66  IYAIE-----KGNLNDIVSIGSNPRKIEGTRVYLEEGERVSLRKLIQGLLINSGNDAGVA 120

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E + GS + F+  +++    +G++NT++ N  GL +   +TTA D A L     +N  
Sbjct: 121 IAEHMDGSIETFSKNLNSYLAGLGLKNTVFMNPHGLFNPEHVTTAEDLATLTQYAMEN-Q 179

Query: 207 QYYKYFSIRKFRYRN----RIITNHNKLLN--KMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           ++ + F  ++  ++       +  H+KL+       + G KTGY   SG  +VT+ + K+
Sbjct: 180 EFSEIFGTKELEWKGATWKTTLYTHHKLMRELPYEGVIGGKTGYVDQSGHTLVTAAKRKE 239

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLE--KKTLKHQQTHRKDNLSSTSLKK 311
             ++ V +   + +       +L+       K +   + T  K N  S + KK
Sbjct: 240 LSLIVVTLNASSQELAYDDTKKLLDYGFNHYKTSSIAKGTSFKVNDGSYTAKK 292


>gi|229084569|ref|ZP_04216839.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44]
 gi|228698719|gb|EEL51434.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44]
          Length = 373

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 68/273 (24%), Positives = 127/273 (46%), Gaps = 14/273 (5%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTL 86
           I +   ++  SII I   ++++     ++I+++ +  ++   K + EP+  AS+TK+MT 
Sbjct: 6   IVIALIVMCASIIPIHTYAQMNDVSARNAILLEEHSGRVLYGKSEHEPQKIASITKIMTA 65

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            +  E   S ++     +P+S  A     S +YLK       E  +  L+ RS ND + A
Sbjct: 66  LLAAE---SGRMR--EAVPISDKAVRVEGSAIYLKPGNKVPLEDLVYGLLLRSGNDAAQA 120

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRKNF 205
             E + GS + F  +M+ KAK+IGM++T + N  GL  D    ++A D A+L      N 
Sbjct: 121 IAENVGGSIEGFVYMMNEKAKQIGMEDTHFSNPHGLDGDGTHYSSAYDMALLTRYAMGN- 179

Query: 206 PQYYKYFSIRKF--RYRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDP 262
             + K F  + +  +  +    N +KL+   +    G KTG+T+ +G  +VT+       
Sbjct: 180 ETFRKIFGTKTYQSKAWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLD 239

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLKH 295
           ++ V +      +     + L     ++  L  
Sbjct: 240 LIVVTLNASNDWD---DHMYLFNQGFKQYELTK 269


>gi|288871299|ref|ZP_06117136.2| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
 gi|288863963|gb|EFC96261.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
          Length = 465

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 80/285 (28%), Positives = 129/285 (45%), Gaps = 33/285 (11%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSK 96
           S++      E+ A+    ++++D     +   K  E +Y PAS+TK+MT  ++ E     
Sbjct: 100 SVVNTVKQPEIQAQ---GAVLMDAATGNLLYSKNAETKYYPASITKLMTALLVAE----- 151

Query: 97  KLHLNTQIPVSKTAATQNPS---KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           K  L+  +  SKTA T   S    L L E    T  Q +  L+ +SAN+V+    E  +G
Sbjct: 152 KCSLDDTVTFSKTAVTNLESGAVTLGLVEGDKLTVRQCLYGLLLKSANEVANGLAEHTAG 211

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY----- 208
           S   FA +M+ +AK++G  NT + N +GL+D N  TT  D A++     +N         
Sbjct: 212 SISAFADMMNARAKELGCTNTNFVNPNGLNDSNHYTTPHDMALIARAAFQNATVCKVAST 271

Query: 209 --YKYFSIRKFRYRNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
             Y+  + +K   R   +   +K+L          + G KTGYT  +G  +VT       
Sbjct: 272 LSYQIPATQKAAARTISLG--HKMLYPNDSRYYQGVIGGKTGYTSLAGNTLVTCAERDGV 329

Query: 262 PIVAVVMGMPTSQERDQKALELITSFL-----EKKTLKHQQTHRK 301
            ++AV+M   ++Q  D  A  L+           +T K QQ   K
Sbjct: 330 RLIAVIMKSKSTQYTDTSA--LLDYGFALKSGGSQTAKWQQEGEK 372


>gi|319898924|ref|YP_004159017.1| Penicillin-binding protein [Bartonella clarridgeiae 73]
 gi|319402888|emb|CBI76439.1| Penicillin-binding protein [Bartonella clarridgeiae 73]
          Length = 394

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/280 (25%), Positives = 135/280 (48%), Gaps = 8/280 (2%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           + R ++++  ++++ I      +E         ++ D N + +   KQ D   +PASLTK
Sbjct: 1   MHRLLRVLFSLIWILIFNEQGQAENFQTSASQLLIFDDNTSTILFKKQSDVAFFPASLTK 60

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALIT 137
           +MT  I+F  L+   L+   +  VS+ A  +       + ++ KEKT  +    +  L+ 
Sbjct: 61  LMTAEIVFHQLKKGFLNKEQKFKVSENAWRKGGAPSGTTTMFAKEKTEISVFDLLRGLVI 120

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            + ND +    E I+G+E  FA LM+ +AK +G+ N+ + NA+G  ++ Q  T  D   L
Sbjct: 121 VNGNDAAITLAEGIAGNEANFAKLMNKRAKTLGLLNSHFVNATGFPEEGQFITLNDMITL 180

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN--IDGIKTGYTRNSGFNIVTS 255
              +   +P YY  +S   F +      N N L++++ +  I+G+  GY+  +GF+ V S
Sbjct: 181 ARHIAHEYPDYYALYSEPDFTWNKITQHNKNPLISQVTDVKIEGLGFGYSEETGFSTVIS 240

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKH 295
                  +   V G+  ++ER ++   ++   L    LK 
Sbjct: 241 AYKNQQRLFLAVSGLQNNKERTKEIKRILQWSLTNFDLKK 280


>gi|237749357|ref|ZP_04579837.1| penicillin-binding protein 6. serine peptidase. merops family s11
           [Oxalobacter formigenes OXCC13]
 gi|229380719|gb|EEO30810.1| penicillin-binding protein 6. serine peptidase. merops family s11
           [Oxalobacter formigenes OXCC13]
          Length = 397

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 71/280 (25%), Positives = 141/280 (50%), Gaps = 15/280 (5%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKP--KYSSIVIDVNKNQMTGFKQDEPRYPAS 79
           I+++++  ++  + F   +    A+ + A      S ++IDV  NQ+      + R  A 
Sbjct: 15  IFMKKSKFVVLFLFFWCFLFNVHAAGVAAPTLTSRSWLLIDVVSNQVLASSNSQERIRAG 74

Query: 80  L-TKMMTLYIIFEYLQSKKLHLNTQIPVSKT--AATQNPSKLYLKEKTYFTTEQGILALI 136
              ++MT Y++F  ++  KL+L+  + VS    A      +++L+  +  T +Q +  LI
Sbjct: 75  TPARLMTAYLVFGAIKDGKLNLDKTVSVSDEIGAMESGGPRMFLQPGSSVTIQQLLDGLI 134

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            + + D +      +SG EK F  LM+ +A ++GM++T + +     DK+  +T  D ++
Sbjct: 135 VQGSEDAALTLALAVSGDEKSFVDLMNREAVRLGMKSTNFTHPYETADKDSYSTPNDLSV 194

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG--FNIVT 254
           L + L +++P YY  FS R+F Y      N N+LL     +DG+      ++G   ++V 
Sbjct: 195 LAVNLMRDYPDYYSGFSTREFTYNKITQRNPNRLLWVDPTVDGL----VASAGVRDSMVV 250

Query: 255 SLRY----KDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           S R      +  +++VV+G  + Q R Q++L+L+    + 
Sbjct: 251 SARRDSILGERRMLSVVVGAVSDQARAQESLKLLNWGFQN 290


>gi|210623818|ref|ZP_03294067.1| hypothetical protein CLOHIR_02018 [Clostridium hiranonis DSM 13275]
 gi|210153313|gb|EEA84319.1| hypothetical protein CLOHIR_02018 [Clostridium hiranonis DSM 13275]
          Length = 453

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 80/325 (24%), Positives = 140/325 (43%), Gaps = 38/325 (11%)

Query: 30  LMGKILFLSIIMISMASELHAK-----PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           L+  +L  + +  S+ S    +        S++++D    ++   K  +   YPAS TK 
Sbjct: 8   LIAFLLVFASVFTSIGSVFADQKVVNLEAKSAVLMDYETGKVLYQKNGNVKIYPASTTKA 67

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
            T Y++ +++      LN +I +        PS ++LK+   FT ++ + AL+  S NDV
Sbjct: 68  WTAYLVIKHVPD----LNEKITIG-NLPYIEPSSMFLKKGETFTVKELLTALMVHSCNDV 122

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           +    E +SGS  KFA LM+ +A+ IG   T + N +GL D N  TTA+D A++      
Sbjct: 123 AYVLAEHVSGSIPKFADLMNKEAEAIGCTGTHFNNPNGLPDPNHYTTAKDMALIARKCMS 182

Query: 204 NFPQYYKYFSIRKFRYR-------NRIITNHNKLLN--------------KMHNIDGIKT 242
           +   + +  + +  +++        R+ TN NK L               K   +DGIKT
Sbjct: 183 DS-VFREIVATKSVKFKPTKQYPHERVYTNSNKFLTSHQKITYKGKRIDIKYDIVDGIKT 241

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKD 302
           G+T  +G  ++TS    +  I++ V    T+      +  LI    E     +      D
Sbjct: 242 GFTNAAGKCLLTSAVKDNQRIISAVFNS-TNDGIYVDSRTLIDYVFEN----YDSFTIMD 296

Query: 303 NLSSTSLKKSLMIKKLKRTYSQFKK 327
                  K+     + K  Y   + 
Sbjct: 297 KADYVDTKRKWFSTQKKLMYQPKES 321


>gi|325265499|ref|ZP_08132221.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
 gi|324029278|gb|EGB90571.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
          Length = 424

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 71/313 (22%), Positives = 135/313 (43%), Gaps = 35/313 (11%)

Query: 29  QLMGKILFLSIIMI----SMASELHAKP-------KYSSIVIDVNKNQMTGFKQDEP-RY 76
           Q+   IL   ++      S   E+ A+          S++++D +  ++   K  +  + 
Sbjct: 18  QITAFILICCMVFAGAGGSAVMEVRAESEEPDNLYAQSAVLMDADSGRILFSKNGQQEKA 77

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS TK+MT  +  EY +     L++++ VS  AA+Q    L   +   F     + +L+
Sbjct: 78  MASTTKIMTCILALEYGR-----LDSEMTVSSYAASQPKVHLGAYKGETFYLRDLLYSLM 132

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN----QITTAR 192
             S ND +    E I  S + FA +M+ KAK++G  +T +   +GL   +      TTA 
Sbjct: 133 LESHNDAAVIIAENIGNSVEGFADMMNAKAKELGCNHTYFITPNGLDAADENGSHHTTAE 192

Query: 193 DQAILGILLRKNFPQ---YYKYFSIRKFRYRN------RIITNHNKLLNKMHNIDGIKTG 243
           D A +      + PQ   + +      +++ +         TNHN  L  M      KTG
Sbjct: 193 DLARIMKYCIMDSPQKEMFLEITRTPSYQFTDCSGKSTYSCTNHNAFLQMMDGALSGKTG 252

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVM--GMPTSQE-RDQKALELITSFLEKKTLKHQQTHR 300
           +T ++G+  V SLR  D   +  ++  G P ++  +      L+   LE    +++   +
Sbjct: 253 FTGDAGYCYVGSLRRDDRTFIVALLACGWPNNKSYKWADTKALMNYGLENY--EYRDIWQ 310

Query: 301 KDNLSSTSLKKSL 313
             +  + ++K  +
Sbjct: 311 DIDAGTAAVKNGI 323


>gi|194016923|ref|ZP_03055536.1| D-alanyl-D-alanine carboxypeptidase DacB (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 5*)
           (PBP-5*) [Bacillus pumilus ATCC 7061]
 gi|194011529|gb|EDW21098.1| D-alanyl-D-alanine carboxypeptidase DacB (DD-peptidase)
           (DD-carboxypeptidase) (Penicillin-binding protein 5*)
           (PBP-5*) [Bacillus pumilus ATCC 7061]
          Length = 383

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 77/270 (28%), Positives = 122/270 (45%), Gaps = 13/270 (4%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I+ID    ++   K   E R  AS+TK+MT  +  E  +     +   + VSK A 
Sbjct: 34  ARSAILIDGQSGRVLFGKDEHEKRRIASITKIMTAVLAIESGK-----MKDTVKVSKRAI 88

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S +YLKE    + E     L+ RS ND + A  E + GS + F  +M+ KA ++GM
Sbjct: 89  QAEGSSIYLKEGQKVSLEDLTYGLMLRSGNDAAVAIAEHVGGSLEGFIFMMNQKASELGM 148

Query: 172 QNTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR--NRIITNHN 228
           +NT ++N  GL D K+  ++A D AIL     +   QY K      ++ +       N N
Sbjct: 149 ENTNFQNPHGLDDHKHHYSSAYDMAILTKYAME-HKQYQKIAGTTFYKAKTMEGYWKNKN 207

Query: 229 KLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           KL+        G KTGYT+ +   +V++    D  ++AV +  P   +      E     
Sbjct: 208 KLVTGLYKYSTGGKTGYTKLAKRTLVSTAAKGDAALIAVTINAPDDWKDHISMFEYAFDH 267

Query: 288 LEKKTLKHQQTHRKDNLSSTSLKKSLMIKK 317
            +   L  +   R  +L  T  +K   IK+
Sbjct: 268 YKTYVLAEKG--RLASLKGTFYEKKAFIKR 295


>gi|291531257|emb|CBK96842.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum 70/3]
          Length = 390

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 124/290 (42%), Gaps = 30/290 (10%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAK--------------PKYSSIVIDVNKNQMTGFK 70
           ++ + +   ++F     +++ +E   K                 S+I+I+ +   +   K
Sbjct: 3   RKILSVAAAVIFAVTATVTVYAESAKKLCYLENTDKSGIGVSAVSAILIEADTGTVLFSK 62

Query: 71  QD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE 129
            + E R  AS TK+MT  +  E  +  K     +  V  TA     + + L+E    T  
Sbjct: 63  NEKEHRQIASTTKIMTALLTLEAGEPDK-----EFEVDPTAIKVEGTSMGLREGDIVTRR 117

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
                ++  S ND + A    ISGS+  FA+LM+ +A++IGM +T +   SGL    Q +
Sbjct: 118 ALCYGMLLPSGNDAANAAAVNISGSKSAFAVLMNKRAEEIGMTDTNFVTPSGLDADGQYS 177

Query: 190 TARDQAILGILLR--KNFPQYYKYFSIRKFRYRN----RIITNHNKLLNKMHNIDGIKTG 243
            A D A+L       K+F +        K  + N    RI+ N NKLL       G+KTG
Sbjct: 178 CAYDLALLTREAMNNKDFAKICGLPK-AKVSFGNPKSDRILVNSNKLLTSYDGCIGVKTG 236

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
           +T ++   +V+        ++AV +  P          +++    EK TL
Sbjct: 237 FTDSARRTLVSCAERDGVRLIAVTLNAPND---WSDHAKMLDYGFEKVTL 283


>gi|154686564|ref|YP_001421725.1| DacB [Bacillus amyloliquefaciens FZB42]
 gi|154352415|gb|ABS74494.1| DacB [Bacillus amyloliquefaciens FZB42]
          Length = 383

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 77/317 (24%), Positives = 135/317 (42%), Gaps = 14/317 (4%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           +  + L+  ++  SI   + A         S+I+ID    ++   K     R  AS+TK+
Sbjct: 6   KAAVFLLTFVILFSITDGNTAHAQIHVSAKSAIIIDGASGRVLFAKDEHHKRRIASITKI 65

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT  +  E  +     +   + VS  A     S +YL+       +  +  L+ RS ND 
Sbjct: 66  MTAVLAIESGK-----MEETVTVSPNAVKTEGSAIYLQPGQKVKLKDLVYGLMLRSGNDA 120

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLR 202
           + A  E++ GS   F  +M+ KA++IGM+NT ++N  GL D +N  +TA D A+L     
Sbjct: 121 AAAIAEYVGGSLDGFVFMMNKKAEQIGMENTKFQNPHGLDDHENLYSTAYDMALLTKYAM 180

Query: 203 KNFPQYYKYFSIRKFRYR--NRIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYK 259
           K   +Y      + ++    +R+  N NKLL        G KTGYT+ +   +V++    
Sbjct: 181 K-IKEYRTVSGTKVYKAETMDRVWKNKNKLLTGLYRYSTGGKTGYTKIAKRTLVSTASKD 239

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKK-L 318
              ++AV +  P   +        +    +   +  +       L  T   K   I + +
Sbjct: 240 GTDLIAVTINDPDDWDDHMNMFNYVFEHYKTYVVAKKG--GIPKLKKTFYGKRAFIARDV 297

Query: 319 KRTYSQFKKIDAKAHST 335
           K    + +  D K  +T
Sbjct: 298 KYLLKEDEIDDVKIRTT 314


>gi|15895327|ref|NP_348676.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum
           ATCC 824]
 gi|15025043|gb|AAK80016.1|AE007708_12 D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum
           ATCC 824]
 gi|325509472|gb|ADZ21108.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum EA
           2018]
          Length = 351

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 81/300 (27%), Positives = 138/300 (46%), Gaps = 11/300 (3%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASL 80
           + I R+I L   +  L+    + A +L+   +  +I ID N   +   K  +   P AS 
Sbjct: 1   MKIYRSIVLALIVCILTPATFAKADKLNLNAR-CAIAIDSNTKMILYEKNADMIVPMAST 59

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           TK+MT  +  +Y      +L+ +  +SK AA+   SK+  K     T  + +  L+ RS 
Sbjct: 60  TKIMTSLVAIKYG-----NLDKKFTISKKAASIRGSKVGYKAGEEITLRELLYGLMLRSG 114

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND +    E I+G+ +KFA LM+  A KIG  N+ ++   GL       TA D A +  +
Sbjct: 115 NDAAICIAEGIAGNTEKFADLMNEYAYKIGAFNSHFQTPHGLDKDLHYCTAYDLAFITSV 174

Query: 201 LRKN--FPQYYKYFSIRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
            ++N  F        +   +Y   R   N NK+L ++   DG+KTGYT N+G  +V+S++
Sbjct: 175 AKENKVFNDIVSSKDVGSGQYGFTRSYHNINKILYQIPGADGVKTGYTGNAGKCLVSSVK 234

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLE-KKTLKHQQTHRKDNLSSTSLKKSLMIK 316
                ++ VV+      +  ++  E +    E KK +         N+ +   K  L+  
Sbjct: 235 MNGHDVIFVVLNCTPRWKETKRMYEYVKKNYEYKKMVSKGDVVYSGNVLNGGGKVKLLAP 294


>gi|225570667|ref|ZP_03779690.1| hypothetical protein CLOHYLEM_06767 [Clostridium hylemonae DSM
           15053]
 gi|225160494|gb|EEG73113.1| hypothetical protein CLOHYLEM_06767 [Clostridium hylemonae DSM
           15053]
          Length = 405

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 74/319 (23%), Positives = 138/319 (43%), Gaps = 36/319 (11%)

Query: 24  IQRNIQLMGKILFLSIIMIS----------MASELHAKPKYSSIVIDVNKNQMTGFKQ-D 72
           +++   ++G I+ +                +  EL      S++++D +  ++   K  D
Sbjct: 1   MKKKYWILGMIMTIVFSAFPSTGTAAGDGDIPEELSQLYARSAVLMDADSGRVLFGKDED 60

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
             R  AS TK+MT  +  E +Q      +     S  AA+Q   +L +K K  F  +  +
Sbjct: 61  VVRPMASTTKIMTCILALENMQE-----DQVTAASDHAASQPKVRLGVKGKEEFRIKDLL 115

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKN--QI 188
            +L+  S ND +    E I+GS + FA +M+ KA ++G  +T +   +GL   D+     
Sbjct: 116 YSLMLESHNDSAVVIAEGIAGSVEAFAGMMNEKAAELGCSDTYFVTPNGLDGYDEGGTHS 175

Query: 189 TTARDQAILGILLRKNFP---QYYKYFSIRKFRYRN------RIITNHNKLLNKMHNIDG 239
           TTARD A +     K+ P   Q+ +    + + + N         +NHN  L  M     
Sbjct: 176 TTARDLAAIMKYCIKDSPKKEQFLEVTRTKDYSFTNVKGDRSFSCSNHNAFLTMMDGALS 235

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVM--GMPTSQE-RDQKALELITSF---LEKKTL 293
            KTG+T ++G+  V +L       +  ++  G P ++  + +   +L+       E +T+
Sbjct: 236 GKTGFTADAGYCYVGALERDGRTFIVALLACGWPNNKGYKWKDTRKLMEYGVANYEYQTV 295

Query: 294 KHQQTHRKDNLSSTSLKKS 312
             Q    KD  +   ++K 
Sbjct: 296 -WQDMKLKDVNAERGIEKG 313


>gi|255305505|ref|ZP_05349677.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile ATCC
           43255]
          Length = 409

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 70/310 (22%), Positives = 135/310 (43%), Gaps = 24/310 (7%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           + + ++  I      + + A          ++++ID    ++   K  DE    ASL+KM
Sbjct: 6   KQLTILALIFIFITPVFAFADTPPVPNSSRAALLIDQETKRILFEKNIDEKMPLASLSKM 65

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT  +  E +   ++     + + K+ A+   S   LK+    +  + +  L+  S ND 
Sbjct: 66  MTFLLAIEAVDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGELMQGLMLVSGNDA 125

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---DKNQ-------ITTARD 193
           + A  + I  +EK F  +M+ KA++IGM +T Y N +GL    D          ++TA D
Sbjct: 126 AIAIAKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHKEPPIENMSTAHD 185

Query: 194 QAILGILLRKNF-PQYYKYFSIRKF--RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
              LG  +  ++  Q  +  +++ +    ++    N N LL  +  +DGIKTGYT N+G+
Sbjct: 186 IVTLGKYMYDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVDGIKTGYTDNAGY 245

Query: 251 NIVTSL-------RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
            +  S+         +   ++ VV+G    + R   +  L+     K     ++   K +
Sbjct: 246 CLAFSMMVPKDAKNERSHRLIGVVLGDGNKKNRISSSASLLKYG--KDNFHSKKIAHKGD 303

Query: 304 LSSTSLKKSL 313
           +  T     +
Sbjct: 304 IIETPCVDGI 313


>gi|319405647|emb|CBI79270.1| Penicillin-binding protein [Bartonella sp. AR 15-3]
          Length = 390

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 77/277 (27%), Positives = 135/277 (48%), Gaps = 12/277 (4%)

Query: 30  LMGKILFLSIIMISMASELHAKP-KYSSI---VIDVNKNQMTGFKQDEPRY-PASLTKMM 84
           L+ K+LF  + ++    +   K  + S++   + D N + +   KQ +  + PASL K+M
Sbjct: 3   LLLKVLFSLVWILVFNEQGQTKKFQTSALQLLIFDDNTDTILFEKQSDVVFFPASLVKLM 62

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRS 139
           T  ++F  L+   L+   +  VS+ A  +       + ++ KEKT  +    +  LI  +
Sbjct: 63  TAEVVFYQLKKGFLNKTQKFKVSENAWRKGGAPSGTTTMFAKEKTEISVFDLLRGLIIVN 122

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND +    E I+G+E  FA LM+ +AK +G+  + + NA+GL +K Q  T RD   L  
Sbjct: 123 GNDAAITLAEGIAGNEANFAKLMNKRAKTLGLLQSHFVNATGLPEKGQFITLRDIITLAR 182

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN--IDGIKTGYTRNSGFNIVTSLR 257
            + + +P YY  +   KF +      N N LL + ++  I+G+  GY+   GF+ V S  
Sbjct: 183 HISREYPDYYALYREPKFTWNKITQHNKNSLLFQENDIEIEGLGFGYSEEIGFSTVVSAC 242

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
            K   I   V G+   +ER ++   ++   +    LK
Sbjct: 243 KKQRRIFLAVNGLQNKKERTKEIERILEWAMTAFDLK 279


>gi|229826630|ref|ZP_04452699.1| hypothetical protein GCWU000182_02006 [Abiotrophia defectiva ATCC
           49176]
 gi|229789500|gb|EEP25614.1| hypothetical protein GCWU000182_02006 [Abiotrophia defectiva ATCC
           49176]
          Length = 478

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 133/299 (44%), Gaps = 32/299 (10%)

Query: 19  YGSIYIQRNIQ--LMGKILFLSI-IMISMASELHAKP------KYSSIVIDVNKNQMTGF 69
              +YI+R+    LM  +LF  + I    A++    P         ++V+D+    +   
Sbjct: 17  MKKLYIKRSFAFFLMIMVLFSVLKINTVFAADSALWPECPSIKAKEAVVMDLATGTILVS 76

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK---TAATQNPSKLYLKEKTY 125
           K  ++  YPAS TK+MT  +  E+ +     L+ ++  +K    AA +  S + +     
Sbjct: 77  KNGNKKWYPASTTKIMTAMLAIEHAK----SLDEEVEFTKEAIDAADRGSSSIGITPGEK 132

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            T  + +  L+  SAN+V+ A     +GS   FA +M+ KA ++G  NT ++N SGL++ 
Sbjct: 133 LTLRECLYGLMLASANEVANALAIHTAGSIDAFADMMNEKAAELGCTNTHFRNPSGLYED 192

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKF-------RYRNRIITNHNKLLNK----- 233
           +  TT  D A +     K    + +  S RK+           R ++N ++L N      
Sbjct: 193 DHYTTPADLAKIARAAIK-IDAFKEIASTRKYVLPKTNLMKEKRPLSNTHQLFNPMQCPE 251

Query: 234 --MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                    KTGYTR + FN+V+ ++     +V V+M   +   +     +L     ++
Sbjct: 252 HAYEYCYAGKTGYTREAKFNLVSYVKKGAMDVVCVIMNAESRDVQYTNTKKLTDYTFKR 310


>gi|255656129|ref|ZP_05401538.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-23m63]
          Length = 394

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 86/338 (25%), Positives = 151/338 (44%), Gaps = 29/338 (8%)

Query: 26  RNIQLMGKILFLSIIMISMASELHA-KPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKM 83
           + I  +  IL   I   S A +    K   +SI+ID    ++   K+ + + P ASL+KM
Sbjct: 6   KKIISLAMILVFIIPNYSYADDKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASLSKM 65

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT  +  E +++K++    ++ + K+ A+   S   LK+       + +  L+  S ND 
Sbjct: 66  MTFLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSGNDA 125

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----------HDKNQITTARD 193
           + A  + I  +++ F   M+ KAK+IGM NT + N +GL            K  I+TA+D
Sbjct: 126 AIAIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENISTAKD 185

Query: 194 QAILGILLRKNFP-QYYKYFSIRKFRYRNRII--TNHNKLLNKMHNIDGIKTGYTRNSGF 250
            AILG  +  N+  Q      +  +   +R    +N N LL  +  +DGIKTGYT N+G+
Sbjct: 186 IAILGKYMFDNYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGNAGY 245

Query: 251 NIVTSLRYK-------DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
            +  S+             ++ VV+G     +R   +L L+     K+    ++   KD+
Sbjct: 246 CLSFSMVVNKNDKNEKKRRVIGVVLGTNHKNKRTSASLALLKYG--KENFNMKKVIDKDS 303

Query: 304 LSSTSLKKSL-----MIKKLKRTYSQFKKIDAKAHSTQ 336
                  K +      +K     Y+  K  ++     +
Sbjct: 304 FIGKKYIKGMKELEVTLKAKDELYTILKDDESIKSEVK 341


>gi|159184785|ref|NP_354505.2| penicillin binding protein [Agrobacterium tumefaciens str. C58]
 gi|159140073|gb|AAK87290.2| penicillin binding protein [Agrobacterium tumefaciens str. C58]
          Length = 390

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 69/264 (26%), Positives = 118/264 (44%), Gaps = 10/264 (3%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           S  +   AK + + + ID     +   +  D+   PASL K+MT+ ++ + L   ++   
Sbjct: 28  SQTAPFIAKAEQAYM-IDAETGTVLLSQNEDQSFPPASLAKLMTVEVVLDALSKGQVTPE 86

Query: 102 TQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           T  PVS+ A          S ++   K+       +  +I ++AND      E ++GS+ 
Sbjct: 87  TAYPVSEYAWRTGGAPSRTSTMFAALKSSVGINDLLTGIIVQNANDGCIIVAEGMAGSDA 146

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            FA  M+ +A ++GM  +I+ N++GL D    TTARD   L   L   +P  Y  F+   
Sbjct: 147 AFAKRMTARAGELGMNRSIFSNSTGLPDPGNQTTARDMVRLAQHLHDTYPDRYALFTKPD 206

Query: 217 FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           F +      N N LL     IDG+  G+   SGF  V S   +   +   + G+   + R
Sbjct: 207 FEWNRIFQRNKNTLLMPGSGIDGLGLGFAEGSGFAAVVSAEREGRRVYLALAGIADDKTR 266

Query: 277 DQKALELITSF---LEKKTLKHQQ 297
            ++A  ++       EK+ L  + 
Sbjct: 267 QEEARRVVDWGLTAFEKRHLFSKD 290


>gi|288561558|ref|YP_003428964.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudofirmus
           OF4]
 gi|288548190|gb|ADC52072.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudofirmus
           OF4]
          Length = 446

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 66/325 (20%), Positives = 149/325 (45%), Gaps = 37/325 (11%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQ-DEPRYPASL 80
           +++      +L ++ ++I+    + A P     S+I++D    ++   K  +E    AS+
Sbjct: 6   KKSFIKAVLLLVITNVLITSPVSVSANPNINTNSAILVDATSGKILLQKNINELLKVASM 65

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALI 136
           +KMM+ Y++ E + +  +     +P+S    + +   N S +YL++   +T ++   ++ 
Sbjct: 66  SKMMSEYLVLEAINNGAISWEQVVPISDLVREISHNNNLSNVYLRQDETYTVKELYESVA 125

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM----QNTIYKNASGLHD-------- 184
             SAN  + A  E I+GSE+ F  +M++KA ++ +     +  + N++GL +        
Sbjct: 126 IYSANGATMALAELIAGSEESFVNMMNDKAMQLELGEYGIDYKFVNSTGLPNQYLLGKHP 185

Query: 185 ------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL-- 231
                      T R  A L   L K++P+  +  SI +  ++        + N N +L  
Sbjct: 186 EGTTEKDENELTVRATAKLAFHLLKDYPEVLETASIERKIFKEGTEDFIQMDNWNWMLPG 245

Query: 232 --NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
                 ++DG+KTGYT  +G++   +    +  ++ VV    + +ER  +  +L+     
Sbjct: 246 LVYGYPDVDGLKTGYTAQAGYSFTGTAERDNVRLITVVTKTSSLEERFSETKKLLDYGFS 305

Query: 290 KKTLKH--QQTHRKDNLSSTSLKKS 312
           + +++    + +R +   +  + K 
Sbjct: 306 QFSIEELIPKGYRPEGQETVGVSKG 330


>gi|296450439|ref|ZP_06892195.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           difficile NAP08]
 gi|296879438|ref|ZP_06903432.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           difficile NAP07]
 gi|296260700|gb|EFH07539.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           difficile NAP08]
 gi|296429584|gb|EFH15437.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           difficile NAP07]
          Length = 397

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 86/338 (25%), Positives = 151/338 (44%), Gaps = 29/338 (8%)

Query: 26  RNIQLMGKILFLSIIMISMASELHA-KPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKM 83
           + I  +  IL   I   S A +    K   +SI+ID    ++   K+ + + P ASL+KM
Sbjct: 9   KKIISLAMILVFIIPNYSYADDKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASLSKM 68

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT  +  E +++K++    ++ + K+ A+   S   LK+       + +  L+  S ND 
Sbjct: 69  MTFLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSGNDA 128

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----------HDKNQITTARD 193
           + A  + I  +++ F   M+ KAK+IGM NT + N +GL            K  I+TA+D
Sbjct: 129 AIAIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENISTAKD 188

Query: 194 QAILGILLRKNFP-QYYKYFSIRKFRYRNRII--TNHNKLLNKMHNIDGIKTGYTRNSGF 250
            AILG  +  N+  Q      +  +   +R    +N N LL  +  +DGIKTGYT N+G+
Sbjct: 189 IAILGKYMFDNYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGNAGY 248

Query: 251 NIVTSLRYK-------DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
            +  S+             ++ VV+G     +R   +L L+     K+    ++   KD+
Sbjct: 249 CLSFSMVVNKNDKNEKKRRVIGVVLGTNHKNKRTSASLALLKYG--KENFNMKKVIDKDS 306

Query: 304 LSSTSLKKSL-----MIKKLKRTYSQFKKIDAKAHSTQ 336
                  K +      +K     Y+  K  ++     +
Sbjct: 307 FIGKKYIKGMKELEVTLKAKDELYTILKDDESIKSEVK 344


>gi|302672276|ref|YP_003832236.1| D-alanyl-D-alanine carboxypeptidase DacA3 [Butyrivibrio
           proteoclasticus B316]
 gi|302396749|gb|ADL35654.1| D-alanyl-D-alanine carboxypeptidase DacA3 [Butyrivibrio
           proteoclasticus B316]
          Length = 488

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 66/255 (25%), Positives = 112/255 (43%), Gaps = 23/255 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++IV+D +   +   K   E  YPAS TK+MT  +  E        L+ +I  S  A 
Sbjct: 75  AEAAIVMDASTGTILYAKNIHEELYPASTTKIMTCLLAVE-----NASLSDKITFSNEAV 129

Query: 112 ---TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
               ++ S + +      T EQ +  ++  SAN+V+ A  E +SGS   F  LM+ +A +
Sbjct: 130 FSVPRDGSSIGMDVGESITLEQALFGIMVGSANEVANAVAEHVSGSIDAFVNLMNQRASE 189

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--------FPQYYKYFSIRKFRYR 220
           +G  NT + N +GL D +  T+A D A++      N         P+Y+  F+    +  
Sbjct: 190 LGCTNTHFNNTNGLQDDDHYTSAYDLALIARAFFNNELLCKVGNTPRYH--FTETSTQPD 247

Query: 221 NRIITNHNKLLN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           +  + N +KL+    K   I G KTGYT  +   +VT        ++ V++   +  +  
Sbjct: 248 DFYLNNKHKLITGEVKFDGIIGGKTGYTDQARETLVTCAERDGVKLICVILKEESPSQ-F 306

Query: 278 QKALELITSFLEKKT 292
              + L        T
Sbjct: 307 TDTVTLFNYGFNNFT 321


>gi|114566442|ref|YP_753596.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114337377|gb|ABI68225.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 373

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 83/301 (27%), Positives = 133/301 (44%), Gaps = 26/301 (8%)

Query: 31  MGKILFLSIIMISMASELHAKPKYS---SIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTL 86
           +  I+ L + M  +AS ++A P  S     ++D    Q +     DE R  AS  KMMT 
Sbjct: 8   IRFIILLLLFMGLIASPVNAAPYISSPYYCLMDGGSGQLILSSNGDETRPVASTVKMMTA 67

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            +  EY       ++ +  VS  AA      + LK +   T  + +   + RS+ND +  
Sbjct: 68  ILTIEYA-----GMDEEATVSSKAARTPEYSIGLKAEQRITVGELLKVALIRSSNDAAVV 122

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E I+G E  FA LMS KA  IG  NT + NASGL    Q +T  D A +G    ++ P
Sbjct: 123 LAEHIAGDESLFAHLMSKKAFLIGASNTRFSNASGLPGGEQFSTCSDLAQIGRYA-QSHP 181

Query: 207 QYYKYFSIRKFRYRN------RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           Q  +  + R+  +++        I+N N LL      DGIKTG    +G  +V S     
Sbjct: 182 QIKELVATRQSDFKHPSYSQPLRISNTNPLLGSYQGADGIKTGTANAAGKCLVASATRDG 241

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKR 320
             ++AVV+    S +R      L+           + ++ +  +++++  K L +   K 
Sbjct: 242 RHLIAVVL---KSSDRAGDCARLLNYGF-------KDSYYQQIINASTPFKELRVLNAKT 291

Query: 321 T 321
            
Sbjct: 292 P 292


>gi|260892761|ref|YP_003238858.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ammonifex degensii KC4]
 gi|260864902|gb|ACX52008.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ammonifex degensii KC4]
          Length = 374

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 68/267 (25%), Positives = 119/267 (44%), Gaps = 19/267 (7%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYI 88
           L+     L ++ ++ AS      + ++ +++         K   E R PASLTK+MT  +
Sbjct: 13  LIFGCWLLGVVQVAWASPPEVTAEAAA-LMERQSGLFYYEKNATERRAPASLTKVMTCIL 71

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
             E            + VS+ AA  +    + L+        + I A +  SAND + A 
Sbjct: 72  ALEMADP-----EEVVTVSRRAAAISMGLVIDLRPGEQIKLRELIKAALIHSANDATVAI 126

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E ++G    F   M+ KA  +G+++T + N +G       +TA+D A L     +N P 
Sbjct: 127 AEAVAGDHDTFVRWMNAKALLLGLEDTHFVNTNGYSHPEHWSTAKDLARLTRYALQN-PT 185

Query: 208 YYKYFSIRKF------RYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           +    + R+         R   I+N N+LL      + G+KTG T+ +G  ++ S R  +
Sbjct: 186 FASLVATRQAVVRWEKPQRELPISNTNRLLHGGYPQVTGVKTGTTQAAGQCLIASARSGE 245

Query: 261 DPIVAVVMGMPTSQERDQKALELITSF 287
              VAVV+    S+ R + A+ L++  
Sbjct: 246 QEFVAVVL---KSKNRYRDAVALLSWG 269


>gi|291557282|emb|CBL34399.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum V10Sc8a]
          Length = 409

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 76/332 (22%), Positives = 146/332 (43%), Gaps = 18/332 (5%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMISMASELHAKPK----------YSSIVIDVNKNQMTGF 69
           G  Y+    ++   +   ++ ++   + L A  +           ++IV +V+  Q+   
Sbjct: 17  GGYYMVLIKRITAGVTAFTLAVVMQGASLTAFSEGDVIEADSITKAAIVTEVSTGQVLYE 76

Query: 70  KQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
                R P AS+TK+M L I  E ++     ++T I  +  A   + S ++L      + 
Sbjct: 77  HNSHERLPMASVTKLMCLLIWAEEMEKGTFGMDTVITATARANAMDGSVIWLNVGEEMSA 136

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
              I +++  SAND   A  E+I+G+E+ F   M+ +A+++GM +T Y N  G       
Sbjct: 137 YDMIRSVVIASANDACVAVCEYIAGTEEMFVERMNKRAQELGMSDTHYDNCVGFDSDTHY 196

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRN----RIITNHNKLLNKMHNIDGIKTGY 244
           T+A D AIL   + + +  Y ++F+ R    R       + N NKL+ +   I G KTG 
Sbjct: 197 TSAYDTAILSAAVSE-YDCYNEFFATRLDYVREGERQTQLLNTNKLMQRYDGIIGGKTGT 255

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNL 304
           T  +G  +    +  +  + AV +G   S++R     +L+        L ++     D L
Sbjct: 256 TDKAGCCLAVWAKRGNMKLCAVALGCKESEQRFTACTDLLNYGFSGFEL-YRTAVDSDVL 314

Query: 305 SSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
           +  ++ + L  K+ +    +   I     S++
Sbjct: 315 TPVTVTEGLE-KQAEVRVKRLNTIVIPKGSSK 345


>gi|187778439|ref|ZP_02994912.1| hypothetical protein CLOSPO_02033 [Clostridium sporogenes ATCC
           15579]
 gi|187772064|gb|EDU35866.1| hypothetical protein CLOSPO_02033 [Clostridium sporogenes ATCC
           15579]
          Length = 418

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 133/291 (45%), Gaps = 25/291 (8%)

Query: 42  ISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKK 97
           +++A +     K ++   +++D    ++   K  D+P  PAS TK+MT  +  E     +
Sbjct: 22  VALAKDSKQNLKIAADGVVLMDSKTGKIIYSKNPDKPYPPASTTKIMTALLTLE-----R 76

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
            +L+  + + +     + SK+Y+ E         +  L+  SAND + A  E++SGS   
Sbjct: 77  GNLDDIVTIGRKPPLADGSKIYILEGEKIKVRDLLYGLLLASANDCAEALAEYLSGSLDN 136

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F+  M+ +AK++G  +T + N SGL++    T+ARD AI+   L K  P+Y K  +   +
Sbjct: 137 FSKDMNKRAKELGCTSTNFVNPSGLYNDKHRTSARDLAIIMNELVKQ-PEYSKIATTLSY 195

Query: 218 RYR-------NRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
                      R + N N+L+ K         +G KTGYT  S  + V S+   +  ++ 
Sbjct: 196 NIPPTNKSKEKRPLWNENRLIQKHSNFYYKGCEGGKTGYTVQSDHSYVASVNKNNHRLI- 254

Query: 266 VVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIK 316
           V +     +     A++L        TL     + KD+  +T    +L + 
Sbjct: 255 VALVHDKEKNFFDDAVKLFNYGFNNFTL--NLLYSKDSYVTTYTNDNLKVP 303


>gi|253580937|ref|ZP_04858199.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847779|gb|EES75747.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 411

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 71/252 (28%), Positives = 123/252 (48%), Gaps = 23/252 (9%)

Query: 54  YSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA- 111
            S++++D   + +   K   +  YPAS+TK+MT  +  EY     L+++  I +S+ AA 
Sbjct: 68  QSAVLMDAVTDTILYSKNAKDKLYPASITKIMTALLACEY-----LNMDDTITMSQEAAY 122

Query: 112 --TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S +Y +    FT EQ ++AL+  SAN+++ A  E  SGS KKF  LM+ +A ++
Sbjct: 123 GIEAGSSSIYAETGEVFTVEQALMALMLESANEMALALAEKTSGSVKKFVELMNQRAAQL 182

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-------NR 222
           G +NT + N +GL D+   TTA D   +      N P++ K+ + + +           R
Sbjct: 183 GCKNTHFNNPNGLPDETHYTTAGDMMKIAKAAWYN-PRFRKFVTTQVYEIPPTNKQSETR 241

Query: 223 IITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
            + NH+K++         + G KTGYT  +G  +VT  +  +  ++AVV+          
Sbjct: 242 YLLNHHKMMPGQSYAYDGVLGGKTGYTDAAGSTLVTYAKRGNSILIAVVLNSTNGA--FP 299

Query: 279 KALELITSFLEK 290
               L+    + 
Sbjct: 300 DTTSLLDYGFDN 311


>gi|42780668|ref|NP_977915.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           ATCC 10987]
 gi|42736588|gb|AAS40523.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           ATCC 10987]
          Length = 374

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 130/294 (44%), Gaps = 19/294 (6%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +L +   +I + +        S+   ++++    ++   K + EP+  AS+T
Sbjct: 2   RRICVIITLLIMYASVIPIPTYAKMTSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASIT 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +   + VS  A     S +YLK       E  +  L+ RS N
Sbjct: 62  KIMTALLAAESGK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGN 116

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L   
Sbjct: 117 DAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTRY 176

Query: 201 LRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              N   + K F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+  
Sbjct: 177 AMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 235

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
                ++ V +   +  +     + L     E+   K      +  L+  + KK
Sbjct: 236 KDGLDLIVVTLSASSDWD---DHMNLFDKGFER--FKQTNVVGQGALAEITEKK 284


>gi|225027210|ref|ZP_03716402.1| hypothetical protein EUBHAL_01466 [Eubacterium hallii DSM 3353]
 gi|224955470|gb|EEG36679.1| hypothetical protein EUBHAL_01466 [Eubacterium hallii DSM 3353]
          Length = 405

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 67/263 (25%), Positives = 124/263 (47%), Gaps = 16/263 (6%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLN 101
           S  +EL +    ++I++D +  ++   K++E   P AS TK+MT     E+      +L+
Sbjct: 49  SAPAELSSLHAKAAILMDGDNQRVLFGKEEEKELPMASTTKIMTCLYAIEHG-----NLS 103

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
            ++  S+ AA+    +L  +  + F     + AL+  S NDV+ A  E I GS ++F   
Sbjct: 104 DKVTFSRRAASAPKVRLGARSGSQFLLSDLLYALMLESYNDVAVAIAEHIGGSVEQFCED 163

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           M+ +A+  G  +T ++  +GL      TT  D A+L  L  KN   + K    + F  + 
Sbjct: 164 MTQEARDYGCYHTSFETPNGLDSAKHYTTCHDLALLTCLALKN-ENFCKIIKEQSFSIKE 222

Query: 222 ------RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM---PT 272
                   + N N  L   +   G+KTGYT N+G+  V +++     +++VV+G    P 
Sbjct: 223 LKNGQSYSLNNKNLFLTSYNGAIGVKTGYTNNAGYCFVGAVKKDGHYLISVVLGSGWYPN 282

Query: 273 SQERDQKALELITSFLEKKTLKH 295
            + + +   +L+   ++    K 
Sbjct: 283 RRYKWEDTKKLMDYGIKNYNKKE 305


>gi|225389445|ref|ZP_03759169.1| hypothetical protein CLOSTASPAR_03193 [Clostridium asparagiforme
           DSM 15981]
 gi|225044492|gb|EEG54738.1| hypothetical protein CLOSTASPAR_03193 [Clostridium asparagiforme
           DSM 15981]
          Length = 448

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 68/286 (23%), Positives = 115/286 (40%), Gaps = 29/286 (10%)

Query: 53  KYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+++ D    ++   K +D  R  AS TK+MT  +  E       + +  +  +K AA
Sbjct: 67  AQSAVLADGLTGRVLYGKGEDTIRPMASTTKIMTCILALELG-----NPDDVVTATKEAA 121

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            Q    L ++    F  +  + +L+  S ND +    E I GS   FA LM+ KAK +G 
Sbjct: 122 GQPKVHLGVQSGQTFYLKDLLYSLMLESHNDAAVMIAEHIGGSVPGFARLMNEKAKALGC 181

Query: 172 QNTIYKNASGLHDKN---------QITTARDQAILGILLRKNFP---QYYKYFSIRKFRY 219
           +NT +   +GL  K            TTA D A +        P   ++ +    + + +
Sbjct: 182 ENTYFITPNGLDAKETDEAGVEHVHSTTAADLARIMAYCVNLSPKRQEFLEITQTQNYFF 241

Query: 220 RN------RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM--- 270
            +         TNHN  L  M  +   KTG+T  +G++ V ++     P V  ++G    
Sbjct: 242 TDVPGKHSYNCTNHNAFLTMMDGVVSGKTGFTGGAGYSYVAAMEKDGRPYVIALLGCGWP 301

Query: 271 PTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIK 316
           P    +   A +L    LE   +K    + +   S   +   L   
Sbjct: 302 PHKTWKWADARKLFNFGLEHYQMK--DVYEEQRFSPVPVTGGLCWD 345


>gi|187734951|ref|YP_001877063.1| Serine-type D-Ala-D-Ala carboxypeptidase [Akkermansia muciniphila
           ATCC BAA-835]
 gi|187425003|gb|ACD04282.1| Serine-type D-Ala-D-Ala carboxypeptidase [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 307

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 66/254 (25%), Positives = 125/254 (49%), Gaps = 15/254 (5%)

Query: 42  ISMASELHAKPK-YSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLH 99
           +++ S     P+  S+ V+D    ++       + R  AS  K++T  ++ E+       
Sbjct: 58  VAIPSSAPRTPRCASACVMDALTGKVLFSHNGLQHRQVASTQKLVTAMVVMEHG-----S 112

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           L+ ++ +  +    +P+KL  +    ++  + + A++ RS NDV+ A     +GS  +FA
Sbjct: 113 LDKKVVIQPSDTKADPTKLGFRAGEVYSRRELLNAMMIRSFNDVALALARDTAGSVPRFA 172

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            LM+ KA+++GM N+ + N +GL   +Q +TA D A     + +N P+       R++ +
Sbjct: 173 QLMNAKARQMGMYNSRFANPNGLPA-DQYSTAIDMARCAYYVYRN-PELRNIICKRQYAF 230

Query: 220 ---RNRI--ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                R   + N NKLL +   + G+KTGYT  +G  +V+S       ++ VV+G   S+
Sbjct: 231 TRANGRTLLLRNTNKLLTQNPWVTGMKTGYTNAAGRCLVSSAGVNGRHVIVVVLGCHPSR 290

Query: 275 ERDQKALELITSFL 288
               ++  LI   L
Sbjct: 291 I-WTESENLIRWAL 303


>gi|167749174|ref|ZP_02421301.1| hypothetical protein EUBSIR_00125 [Eubacterium siraeum DSM 15702]
 gi|167657852|gb|EDS01982.1| hypothetical protein EUBSIR_00125 [Eubacterium siraeum DSM 15702]
          Length = 389

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 75/330 (22%), Positives = 147/330 (44%), Gaps = 21/330 (6%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPK----------YSSIVIDVNKNQMTGFKQ 71
           ++I+R   +   +   ++ +++  + L A  +           ++IV +V+  Q+     
Sbjct: 2   VFIKR---ITAVVTAFALAVVTQGASLTAFSEGDVSEADSITKAAIVTEVSTGQVLYEHN 58

Query: 72  DEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
              R P AS+TK+M L I  E ++     ++T I  +  A   + S ++L      +   
Sbjct: 59  SHERLPMASVTKLMCLLIWAEEMEKGTFGMDTVITATARANAMDGSVIWLNVGEEMSAYD 118

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            I +++  SAND   A  E+I+G+E+ F   M+ +A+++GM +T Y N  G       T+
Sbjct: 119 MIRSVVIASANDACVAVCEYIAGTEEMFVERMNKRAQELGMSDTHYDNCVGFDSDTHYTS 178

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRN----RIITNHNKLLNKMHNIDGIKTGYTR 246
           A D A+L   + + +  Y ++F+ R    R       + N NKL+ +   I G KTG T 
Sbjct: 179 AYDTALLSAAVSE-YDCYNEFFATRLDYVREGERQTQLLNTNKLMQRYDGIIGGKTGTTD 237

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSS 306
            +G  +    +  +  + AV +G   S++R     +L+        L ++     D L+ 
Sbjct: 238 KAGCCLAVWAKRGNMKLCAVALGCKESEQRFTACTDLLNHGFSGFEL-YRTAVDSDVLTP 296

Query: 307 TSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
            ++ + L  K+      +   I     S++
Sbjct: 297 VTVTEGLE-KQADIRVKRLNTIVIPKGSSK 325


>gi|255307153|ref|ZP_05351324.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile ATCC
           43255]
          Length = 394

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 85/338 (25%), Positives = 151/338 (44%), Gaps = 29/338 (8%)

Query: 26  RNIQLMGKILFLSIIMISMASELHA-KPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKM 83
           + I  +  IL   I   S A +    K   +SI+ID    ++   K+ + + P ASL+KM
Sbjct: 6   KKIISLAMILVFIIPNYSYADDKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASLSKM 65

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT  +  E +++K++    ++ + K+ A+   S   LK+       + +  L+  S ND 
Sbjct: 66  MTFLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSGNDA 125

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----------HDKNQITTARD 193
           + A  + I  +++ F   M+ KAK+IGM NT + N +GL            K  I+TA+D
Sbjct: 126 AIAIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENISTAKD 185

Query: 194 QAILGILLRKNFP-QYYKYFSIRKFRYRNRII--TNHNKLLNKMHNIDGIKTGYTRNSGF 250
            AILG  +  ++  Q      +  +   +R    +N N LL  +  +DGIKTGYT N+G+
Sbjct: 186 IAILGKYMFDHYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGNAGY 245

Query: 251 NIVTSLRYK-------DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
            +  S+             ++ VV+G     +R   +L L+     K+    ++   KD+
Sbjct: 246 CLSFSMVVNKNDKNEKKRRVIGVVLGTNHKNKRTSASLALLKYG--KENFNMKKVIDKDS 303

Query: 304 LSSTSLKKSL-----MIKKLKRTYSQFKKIDAKAHSTQ 336
                  K +      +K     Y+  K  ++     +
Sbjct: 304 FIGKKYIKGMKELEVTLKAKDELYTILKDDESIKSEVK 341


>gi|255101277|ref|ZP_05330254.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-63q42]
          Length = 394

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 85/328 (25%), Positives = 148/328 (45%), Gaps = 29/328 (8%)

Query: 26  RNIQLMGKILFLSIIMISMASELHA-KPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKM 83
           + I  +  IL   I   S A +    K   +SI+ID    ++   K+ + + P ASL+KM
Sbjct: 6   KKIISLAMILVFIIPNYSYADDKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASLSKM 65

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT  +  E +++K++    ++ + K+ A+   S   LK+       + +  L+  S ND 
Sbjct: 66  MTFLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSGNDA 125

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----------HDKNQITTARD 193
           + A  + I  +++ F   M+ KAK+IGM NT + N +GL            K  I+TA+D
Sbjct: 126 AIAIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENISTAKD 185

Query: 194 QAILGILLRKNFP-QYYKYFSIRKFRYRNRII--TNHNKLLNKMHNIDGIKTGYTRNSGF 250
            AILG  +  ++  Q      +  +   +R    +N N LL  +  +DGIKTGYT N+G+
Sbjct: 186 IAILGKYMFDHYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGNAGY 245

Query: 251 NIVTSLRYK-------DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
            +  S+             ++ VV+G     +R   +L L+     K+    ++   KD+
Sbjct: 246 CLSFSMVVNKNDKNEKKRRVIGVVLGTNHKNKRTSASLALLKYG--KENFNMKKVIDKDS 303

Query: 304 LSSTSLKKSL-----MIKKLKRTYSQFK 326
                  K +      +K     Y+  K
Sbjct: 304 FIGKKYIKGMKELEVTLKAKDELYTILK 331


>gi|126699758|ref|YP_001088655.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile 630]
 gi|115251195|emb|CAJ69026.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile]
          Length = 397

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 85/338 (25%), Positives = 151/338 (44%), Gaps = 29/338 (8%)

Query: 26  RNIQLMGKILFLSIIMISMASELHA-KPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKM 83
           + I  +  IL   I   S A +    K   +SI+ID    ++   K+ + + P ASL+KM
Sbjct: 9   KKIISLAMILVFIIPNYSYADDKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASLSKM 68

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT  +  E +++K++    ++ + K+ A+   S   LK+       + +  L+  S ND 
Sbjct: 69  MTFLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSGNDA 128

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----------HDKNQITTARD 193
           + A  + I  +++ F   M+ KAK+IGM NT + N +GL            K  I+TA+D
Sbjct: 129 AIAIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENISTAKD 188

Query: 194 QAILGILLRKNFP-QYYKYFSIRKFRYRNRII--TNHNKLLNKMHNIDGIKTGYTRNSGF 250
            AILG  +  ++  Q      +  +   +R    +N N LL  +  +DGIKTGYT N+G+
Sbjct: 189 IAILGKYMFDHYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGNAGY 248

Query: 251 NIVTSLRYK-------DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
            +  S+             ++ VV+G     +R   +L L+     K+    ++   KD+
Sbjct: 249 CLSFSMVVNKNDKNEKKRRVIGVVLGTNHKNKRTSASLALLKYG--KENFNMKKVIDKDS 306

Query: 304 LSSTSLKKSL-----MIKKLKRTYSQFKKIDAKAHSTQ 336
                  K +      +K     Y+  K  ++     +
Sbjct: 307 FIGKKYIKGMKELEVTLKAKDELYTILKDDESIKSEVK 344


>gi|291532593|emb|CBL05706.1| D-alanyl-D-alanine carboxypeptidase [Megamonas hypermegale ART12/1]
          Length = 424

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 80/318 (25%), Positives = 140/318 (44%), Gaps = 16/318 (5%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEP-RYPA 78
            Y+ + I ++   L L I  I++A  L        S+ +ID + N +   K ++   +PA
Sbjct: 23  FYVFKKIAIIFS-LCLLICNIALAKTLPNPDTSAVSACLIDADDNGVLYGKDEDKIMHPA 81

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           S TK+MT  +  E  +     L+  + ++  A    PS L L+     T  + +  ++  
Sbjct: 82  STTKIMTAILALESGK-----LDEPLVITPEAVNTEPSSLGLRLGDKITLREALTGMMIV 136

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND + A  + ++GS   FA +M++KAK++G  NT + N  GL  +   +TA D AI+ 
Sbjct: 137 SGNDAAVAVAQTVAGSVPAFAKMMNDKAKELGAVNTHFLNPHGLTAQGHYSTAHDMAIIA 196

Query: 199 ILLRKNFPQYYKYFSIRKFRYR-----NRIITNHNKLLNK-MHNIDGIKTGYTRNSGFNI 252
               K  P++ +  S + +  +        +T  N+ L       +GIKTG+T  +G  +
Sbjct: 197 SYAMKK-PEFREIVSKKAYNMKYMDGHTEYVTTTNRFLKSGFEGANGIKTGFTNAAGDCL 255

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           V S       ++AV        +     LE   SF +   L+ +    K N+   +    
Sbjct: 256 VASATRGQKTLIAVFYNDDYRWDDAPTWLEFGFSFYDPSELQDKTVVSKQNVIKLNKITE 315

Query: 313 LMIKKLKRTYSQFKKIDA 330
             IK  + T      +DA
Sbjct: 316 QRIKHSRETNKNLAALDA 333


>gi|254975737|ref|ZP_05272209.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-66c26]
 gi|255093124|ref|ZP_05322602.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CIP
           107932]
 gi|255314866|ref|ZP_05356449.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-76w55]
 gi|255517540|ref|ZP_05385216.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-97b34]
 gi|255650651|ref|ZP_05397553.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-37x79]
 gi|306520578|ref|ZP_07406925.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
           QCD-32g58]
          Length = 394

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 83/339 (24%), Positives = 152/339 (44%), Gaps = 35/339 (10%)

Query: 31  MGKILFLSIIMISMASELHAKPKYS-------SIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           + KI+ L++I++ +          S       SI+ID    ++   K+ + + P ASL+K
Sbjct: 5   LKKIISLAMILVFIIPNYSYADGKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASLSK 64

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           MMT  +  E +++K++    ++ + K+ A+   S   LK+       + +  L+  S ND
Sbjct: 65  MMTFLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSGND 124

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----------HDKNQITTAR 192
            + A  + I  +++ F   M+ KAK+IGM NT + N +GL            K  I+TA+
Sbjct: 125 AAIAIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENISTAK 184

Query: 193 DQAILGILLRKNFP-QYYKYFSIRKFRYRNRII--TNHNKLLNKMHNIDGIKTGYTRNSG 249
           D AILG  +  ++  Q      +  +   +R    +N N LL  +  +DGIKTGYT N+G
Sbjct: 185 DIAILGKYMFDHYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGNAG 244

Query: 250 FNIVTSLRYK-------DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKD 302
           + +  S+             ++ VV+G     +R   +L L+     K+    ++   KD
Sbjct: 245 YCLSFSMVVNKNEKNEKKRRVIGVVLGTNHKNKRTSASLALLKYG--KENFNMKKVIDKD 302

Query: 303 NLSSTSLKKSL-----MIKKLKRTYSQFKKIDAKAHSTQ 336
           +       K +      +K     Y+  K  ++     +
Sbjct: 303 SFIGKKYIKGMKELEVTLKAKDELYTILKDDESIKSEVK 341


>gi|260683741|ref|YP_003215026.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196]
 gi|260687401|ref|YP_003218535.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291]
 gi|260209904|emb|CBA63846.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196]
 gi|260213418|emb|CBE05068.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291]
          Length = 397

 Score =  222 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 83/339 (24%), Positives = 152/339 (44%), Gaps = 35/339 (10%)

Query: 31  MGKILFLSIIMISMASELHAKPKYS-------SIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           + KI+ L++I++ +          S       SI+ID    ++   K+ + + P ASL+K
Sbjct: 8   LKKIISLAMILVFIIPNYSYADGKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASLSK 67

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           MMT  +  E +++K++    ++ + K+ A+   S   LK+       + +  L+  S ND
Sbjct: 68  MMTFLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSGND 127

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----------HDKNQITTAR 192
            + A  + I  +++ F   M+ KAK+IGM NT + N +GL            K  I+TA+
Sbjct: 128 AAIAIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENISTAK 187

Query: 193 DQAILGILLRKNFP-QYYKYFSIRKFRYRNRII--TNHNKLLNKMHNIDGIKTGYTRNSG 249
           D AILG  +  ++  Q      +  +   +R    +N N LL  +  +DGIKTGYT N+G
Sbjct: 188 DIAILGKYMFDHYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGNAG 247

Query: 250 FNIVTSLRYK-------DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKD 302
           + +  S+             ++ VV+G     +R   +L L+     K+    ++   KD
Sbjct: 248 YCLSFSMVVNKNEKNEKKRRVIGVVLGTNHKNKRTSASLALLKYG--KENFNMKKVIDKD 305

Query: 303 NLSSTSLKKSL-----MIKKLKRTYSQFKKIDAKAHSTQ 336
           +       K +      +K     Y+  K  ++     +
Sbjct: 306 SFIGKKYIKGMKELEVTLKAKDELYTILKDDESIKSEVK 344


>gi|75764308|ref|ZP_00743843.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74488202|gb|EAO51883.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 349

 Score =  222 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 71/309 (22%), Positives = 137/309 (44%), Gaps = 21/309 (6%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +L +   ++ + +        S+   ++++    ++   K + EP+  AS+T
Sbjct: 52  RRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASIT 111

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +   + VS  A     S +YLK       E  +  L+ RS N
Sbjct: 112 KIMTALLAAESGK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGN 166

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS   F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L   
Sbjct: 167 DAAQVIAESVGGSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKY 226

Query: 201 LRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              N   + K F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+  
Sbjct: 227 AMGN-ESFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 285

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK--SLMI 315
                ++ V +   +  +     + L     E+   K  +   +  ++  + KK  + +I
Sbjct: 286 KDGLDLIVVTLSASSDWD---DHMNLFDKGFER--FKQTKVLGQGAIAEINEKKYANHVI 340

Query: 316 KKLKRTYSQ 324
           +K+   Y  
Sbjct: 341 RKIVFPYRN 349


>gi|153953521|ref|YP_001394286.1| DacA1 [Clostridium kluyveri DSM 555]
 gi|146346402|gb|EDK32938.1| DacA1 [Clostridium kluyveri DSM 555]
          Length = 407

 Score =  222 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 80/308 (25%), Positives = 141/308 (45%), Gaps = 29/308 (9%)

Query: 29  QLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLT 81
           +++  ILF  II       +     L +    S++++D    ++   K  +  YP AS T
Sbjct: 3   KIVTFILFFLIICYINPYNVYATQTLPSVSADSAVILDATTGEVLYAKNPDSAYPPASTT 62

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E       +LN ++ V K     + +++ L E    T +  +  L+  SAN
Sbjct: 63  KIMTALLTLE-----NTNLNDKVTVGKNPPLVDGTRIGLYEGEELTVKDLLYGLLLASAN 117

Query: 142 DVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           D + A  E I  GS +KFAI M+ KA ++G  NT + N SGL D+   T+A+D A++   
Sbjct: 118 DCAEALAEHIGNGSSEKFAIEMNKKAHELGAYNTNFVNPSGLFDEKHKTSAKDLALIMKE 177

Query: 201 LRKNFPQYYKYFSIRKFRY-------RNRIITNHNKLLNK-----MHNIDGIKTGYTRNS 248
           L KN P+Y K  +   +         + R + N NKL+           +G KTGYT  S
Sbjct: 178 LCKN-PEYSKIATTLYYTIPPTNKSPKERGVWNENKLIQPNSTYYYSGCEGGKTGYTTQS 236

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
             + V++       ++ V +    ++     ++ L     +  +L   + + K +L +T 
Sbjct: 237 LHSYVSAATRNGQRLI-VALVHDKNKTFFPDSISLFNFGFDNFSLV--KLYSKGDLVTTY 293

Query: 309 LKKSLMIK 316
            K ++ + 
Sbjct: 294 NKNNISVP 301


>gi|254522509|ref|ZP_05134564.1| beta-lactamase [Stenotrophomonas sp. SKA14]
 gi|219720100|gb|EED38625.1| beta-lactamase [Stenotrophomonas sp. SKA14]
          Length = 260

 Score =  222 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 117/255 (45%), Gaps = 11/255 (4%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           M+  +  +   SSI +D     +      E  R PASLTK+MT Y  +  ++ +    + 
Sbjct: 1   MSLPVPERAPLSSITLDAATFAVIHQHNAETARQPASLTKLMTAYAAYACVEERGRAWDE 60

Query: 103 QIPV---SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            + +      A   + +++ L      T  + +  L+  S ND + A    + GS+  F 
Sbjct: 61  AVTIASNDVHAVADDETRMGLVPGETVTLARLLEGLMIVSGNDAALAIARHLDGSQTAFL 120

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             M+  A+++G+++T + + SG+   +  ++ARD A+L   L  + PQ     + R F +
Sbjct: 121 DRMNRHARQLGLRSTWFASVSGITTPHHASSARDMAVLAACLLNDHPQILAITAQRAFVH 180

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY--KDD----PIVAVVMGMPTS 273
                 N N LL + H +DG+KTGYTR +GF +  +             ++ VV+G  + 
Sbjct: 181 GRFSRNNQNALLGE-HGVDGLKTGYTRAAGFCLAATACRTVPGRAQPVRLITVVLGSESR 239

Query: 274 QERDQKALELITSFL 288
             RD    + +++  
Sbjct: 240 DARDALVRDQLSAGF 254


>gi|260587841|ref|ZP_05853754.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
           20583]
 gi|331083843|ref|ZP_08332952.1| hypothetical protein HMPREF0992_01876 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542106|gb|EEX22675.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
           20583]
 gi|330403268|gb|EGG82828.1| hypothetical protein HMPREF0992_01876 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 411

 Score =  222 bits (565), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 70/322 (21%), Positives = 123/322 (38%), Gaps = 38/322 (11%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP-------KYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           +  +++   L   I M +    +  K          S+ +ID    ++   K  +E R  
Sbjct: 5   KWKKILSLFLAFYISMSAFPVLVAGKGDEPENLYALSAALIDGESGRVLYEKNGEEKRPM 64

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK+MT  +  E        L      S+ AA      L       F  +  + +L+ 
Sbjct: 65  ASTTKIMTCILTLESGC-----LEEIAEASEKAARMPKVHLGASVGEKFYVKDLLYSLML 119

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------QIT 189
            S ND +    E + GS + FA  M+ KA++IG ++T +   +GL  K           T
Sbjct: 120 ESHNDSAVILAEHVGGSVEGFAEKMNEKAREIGCEDTWFITPNGLDAKEEREGEEKVHET 179

Query: 190 TARDQAILGILLRKNFP---QYYKYFSIRKFRY------RNRIITNHNKLLNKMHNIDGI 240
           TA + A +        P   ++ K      +R+      R     NHN  L+ M      
Sbjct: 180 TAENLAQIMRYCVCLSPAREEFLKITQTPSYRFSDADGKREFSCQNHNAFLSMMEGAISG 239

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGM---PTSQERDQKALELITSFLEKKTLKHQQ 297
           KTG+T  +G+  V +L+     ++  ++G         +     +L+   L + +L    
Sbjct: 240 KTGFTAQAGYCYVGALQRDGKTLIVALLGCGWPNNKGYKWSDTRKLMEYGLNEYSL---- 295

Query: 298 THRKDNLSSTSLKKSLMIKKLK 319
            H  D +  +   K + +K  K
Sbjct: 296 -HSFDEIEFSKCPKEIPVKNAK 316


>gi|219854143|ref|YP_002471265.1| hypothetical protein CKR_0800 [Clostridium kluyveri NBRC 12016]
 gi|219567867|dbj|BAH05851.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 415

 Score =  222 bits (565), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 80/311 (25%), Positives = 142/311 (45%), Gaps = 29/311 (9%)

Query: 26  RNIQLMGKILFLSIIM------ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-A 78
           +  +++  ILF  II       +     L +    S++++D    ++   K  +  YP A
Sbjct: 8   KMKKIVTFILFFLIICYINPYNVYATQTLPSVSADSAVILDATTGEVLYAKNPDSAYPPA 67

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           S TK+MT  +  E       +LN ++ V K     + +++ L E    T +  +  L+  
Sbjct: 68  STTKIMTALLTLE-----NTNLNDKVTVGKNPPLVDGTRIGLYEGEELTVKDLLYGLLLA 122

Query: 139 SANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           SAND + A  E I  GS +KFAI M+ KA ++G  NT + N SGL D+   T+A+D A++
Sbjct: 123 SANDCAEALAEHIGNGSSEKFAIEMNKKAHELGAYNTNFVNPSGLFDEKHKTSAKDLALI 182

Query: 198 GILLRKNFPQYYKYFSIRKFRY-------RNRIITNHNKLLNK-----MHNIDGIKTGYT 245
              L KN P+Y K  +   +         + R + N NKL+           +G KTGYT
Sbjct: 183 MKELCKN-PEYSKIATTLYYTIPPTNKSPKERGVWNENKLIQPNSTYYYSGCEGGKTGYT 241

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLS 305
             S  + V++       ++ V +    ++     ++ L     +  +L   + + K +L 
Sbjct: 242 TQSLHSYVSAATRNGQRLI-VALVHDKNKTFFPDSISLFNFGFDNFSLV--KLYSKGDLV 298

Query: 306 STSLKKSLMIK 316
           +T  K ++ + 
Sbjct: 299 TTYNKNNISVP 309


>gi|295109905|emb|CBL23858.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162]
          Length = 412

 Score =  222 bits (565), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 74/322 (22%), Positives = 148/322 (45%), Gaps = 26/322 (8%)

Query: 6   IQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQ 65
           ++             ++Y Q ++   G +    +++  ++ +L+A    S++++D +  +
Sbjct: 1   MKFRCSVFIYVILICNLYCQFSV-HAGSLDHAILMVPQLSDDLYA---LSAVLMDADSGR 56

Query: 66  MTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKT 124
           +   K+ E PR  AS TK++T  +  E         +  + VS  AA+Q   KL L++  
Sbjct: 57  ILYEKEGEMPRPNASTTKVLTCILALENGDG-----DDYVQVSANAASQPQVKLGLQKGE 111

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
            +  E  + +L+ +S ND + A  E I GS K F+ LM+ KA+KIG  +T +   +GL  
Sbjct: 112 QYYLEDLLYSLLLQSHNDSAVAIAEHIGGSVKGFSDLMNAKARKIGCTDTHFITPNGLDA 171

Query: 185 KN----QITTARDQAILGILLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLLNKM 234
           ++      TTA D A +     KN   + K    +++ +      R   + N N L +  
Sbjct: 172 EDSSGTHHTTASDLARIMRYAIKN-KVFLKIAQTKEYSFSDLSKKRTFSVHNTNALFSMT 230

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM--GMPTSQE-RDQKALELITSFLEKK 291
             +   KTG+T ++G+  V +++  D   +  ++  G P  +  +    L+L+     K 
Sbjct: 231 DGVLAGKTGFTGDAGYCYVCAVQKDDRTFIIALLAAGWPGHKTYKWHDTLKLLDYG--KN 288

Query: 292 TLKHQQTHRKDNLSSTSLKKSL 313
              ++   ++ +LS   +K  +
Sbjct: 289 NFYYRSFWQEPDLSYIPVKDGI 310


>gi|160946179|ref|ZP_02093390.1| hypothetical protein PEPMIC_00141 [Parvimonas micra ATCC 33270]
 gi|158447702|gb|EDP24697.1| hypothetical protein PEPMIC_00141 [Parvimonas micra ATCC 33270]
          Length = 391

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 142/297 (47%), Gaps = 15/297 (5%)

Query: 29  QLMGKILFLSIIMISMASELHA----KPKYSSIVIDVNKNQM-TGFKQDEPRYPASLTKM 83
            L+   L  SI  +  A         K   +S++ D     +      DEP   AS++K+
Sbjct: 6   ALLSLALIFSICFVGTAKSYAIFGIEKKTTASLIGDAKSGALFVAENIDEPLSIASISKL 65

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT Y++ E +   KL +  ++ +S  A+ +  S L LK     + +  +  L+  S ND 
Sbjct: 66  MTYYLVKEKIAEGKLKMEDKVKISINASREEGSSLNLKAGEQISIKDLLDGLMVVSGNDS 125

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--HDKNQITTARDQAILGILL 201
           + A  E ++ SE KF  +M+ KAK++G+QN  + NASGL  + ++   + RD   L   +
Sbjct: 126 AVALAEVVAESESKFVTMMNEKAKELGLQNATFTNASGLTKNGQDNKMSTRDIFTLSKAI 185

Query: 202 RKNFPQYYKYFSIRKFRY--RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            + +P+  +Y          RN    +   L+ ++  +DG+KTG+T  +G+ +V++++ K
Sbjct: 186 IEKYPEVLEYAKTTVLEQPSRNFKKESTIPLVGQVEGVDGLKTGHTDEAGYCLVSTMKIK 245

Query: 260 DD----PIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
                  +++V+MG  T  +R Q   +++     K+ ++ ++    +        KS
Sbjct: 246 KGETEFRVISVLMGAKTKADRAQYMKDMLNYA--KQNIETRKIVDSEKFVKKVETKS 300


>gi|253578829|ref|ZP_04856100.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849772|gb|EES77731.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 421

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 74/322 (22%), Positives = 134/322 (41%), Gaps = 30/322 (9%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSK 96
           ++ M  +A E       S++++D    ++   K  E P   AS TK++T  +  E     
Sbjct: 44  TVDMTPVAEEPAELYALSAVLMDGESGRVLYEKDGERPLANASTTKVLTCIVALENSPG- 102

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
               +  + VS+ AA+Q   KL L++   +  E  + +L+ +S ND + A  E   GS +
Sbjct: 103 ----DDYVQVSQNAASQPEVKLGLQKGEQYYLEDLLYSLMLKSHNDTAVAIAEHCGGSVE 158

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKN----QITTARDQAILGILLRKNFPQYYKYF 212
            FA +++ KAK+IG +NT +   +GL  ++      TTA+D A++     KN   +    
Sbjct: 159 GFARMLNRKAKQIGCKNTYFITPNGLDAEDENGKHHTTAKDLALIMRYAIKN-ETFLHIA 217

Query: 213 SIRKFRYRNRI------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
             R + +          + N N  L+    +   KTGYT  +G+  V +   +    +  
Sbjct: 218 QTRDYTFSEITGKRTFSVHNANAFLDMRDGVLAGKTGYTSQAGYCYVCAWEKEGKTFIVS 277

Query: 267 VMGM---PTSQERDQKALELI----------TSFLEKKTLKHQQTHRKDNLSSTSLKKSL 313
           ++G         +     +L+          T + E +T K   T   ++      K  L
Sbjct: 278 LLGCGWPNHKTYKWSDTEKLLDFGDYNYEYETYWKEPQTGKILVTDGVEDDQDIGTKIYL 337

Query: 314 MIKKLKRTYSQFKKIDAKAHST 335
             K     Y + K++  K   T
Sbjct: 338 RGKCSVTAYDREKEVLLKKGET 359


>gi|167751641|ref|ZP_02423768.1| hypothetical protein EUBSIR_02646 [Eubacterium siraeum DSM 15702]
 gi|167655449|gb|EDR99578.1| hypothetical protein EUBSIR_02646 [Eubacterium siraeum DSM 15702]
          Length = 390

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 110/245 (44%), Gaps = 16/245 (6%)

Query: 56  SIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +I+I+ +   +   K + E R  AS TK+MT  +  E  +  K     +  V  TA    
Sbjct: 48  AILIEADTGTVLFSKNEKEHRQIASTTKIMTALLTLEAGEPDK-----EFEVDPTAIKVE 102

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            + + L+E    T       ++  S ND + A    ISGS+  FA+LM+ +A++IGM +T
Sbjct: 103 GTSMGLREGDIVTRRALCYGMLLPSGNDAANAAAVNISGSKSAFAVLMNKRAEEIGMTDT 162

Query: 175 IYKNASGLHDKNQITTARDQAILGILLR--KNFPQYYKYFSIRKFRYRN----RIITNHN 228
            +   SGL    Q + A D A+L       K+F +        K  + N    RI+ N N
Sbjct: 163 NFVTPSGLDADGQYSCAYDLALLTREAMNNKDFAKICGLPK-AKVSFGNPKSDRILVNSN 221

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           KLL       G+KTG+T ++   +V+        ++AV +  P          +++    
Sbjct: 222 KLLTSYDGCIGVKTGFTDSARRTLVSCAERDGVRLIAVTLNAPND---WSDHAKMLDYGF 278

Query: 289 EKKTL 293
           EK TL
Sbjct: 279 EKVTL 283


>gi|315650677|ref|ZP_07903733.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saburreum DSM
           3986]
 gi|315487054|gb|EFU77380.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saburreum DSM
           3986]
          Length = 466

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 81/327 (24%), Positives = 147/327 (44%), Gaps = 31/327 (9%)

Query: 26  RNIQLMGKILFLSIIMISMASELHA-----KPKYSS---IVIDVNKNQMTGFKQ-DEPRY 76
           + I   G +L LSI +IS A E  A     KP  S+    V + +  +    K  D+  Y
Sbjct: 4   KKIISGGLVLVLSISVISFAPEYMAVYADTKPDISAQGAAVYNADTGEFLYEKNGDKQFY 63

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT---QNPSKLYLKEKTYFTTEQGIL 133
           PAS+TK+MT  +  E       +L+  I  S++A T      + L +      +    + 
Sbjct: 64  PASITKIMTGLLTVEQA-----NLDDTITFSRSATTNLESGSTSLGVVAGDTMSVRDALY 118

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            ++  SAN+VS    E + GS   FA +M+N+AK++G  +T + N +GL+++N +TTA+D
Sbjct: 119 GMMLASANEVSNGLAEHVGGSVAGFANMMNNRAKELGATHTNFVNPNGLNNQNHVTTAKD 178

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYR-------NRIITNHNKLLN---KMHNIDGIKTG 243
            A++     +N P +        + +         ++I  H+K++        + G KTG
Sbjct: 179 MALIAAAAFRN-PTFRAVAGASSYSFPATKSKPTPKLIKMHHKMVTGEISYAGVIGGKTG 237

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
           YT+++G  +VT+       ++ VV+    +        +L+       +    +   K  
Sbjct: 238 YTKSAGNTLVTAAERNGVRLIVVVLKCNGTH--YTDTRKLLDYGFSIASKDTGRAVAKKQ 295

Query: 304 LSSTSLKKSLMIKKLKRTYSQFKKIDA 330
             +   KK  +    K+  +  KK +A
Sbjct: 296 -EAAPAKKQEVAPVKKQEVAVTKKQEA 321


>gi|319404207|emb|CBI77800.1| Penicillin-binding protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 390

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 76/277 (27%), Positives = 136/277 (49%), Gaps = 12/277 (4%)

Query: 30  LMGKILFLSIIMISMASELHAKP-KYSSI---VIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
           L+ K+LF  I ++    +   K  + S++   ++D N + +   KQ D   +PASL K+M
Sbjct: 3   LLLKVLFSLIWILIFNEQGQTKKFQTSALQLLILDDNTDTILFEKQSDIVFFPASLAKLM 62

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRS 139
           T  ++F  L+   L+   +  VS+ A  +       + ++ KEKT  +    +  L+  +
Sbjct: 63  TAEVVFYQLKKGFLNKTQKFKVSENAWRKGGAPSGTTTMFAKEKTEISIFDLLHGLVIVN 122

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND +    E I+G+E  FA LM+ +AK +G+ ++ + NA+GL +K Q TT RD   L  
Sbjct: 123 GNDAAVILAEGIAGNEANFAKLMNKRAKTLGLLHSHFVNATGLPEKGQFTTLRDIITLVR 182

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN--IDGIKTGYTRNSGFNIVTSLR 257
            + + +P YY  +    F +      N N L+ + ++  I+G+  GY+   GF+ V S  
Sbjct: 183 HIAREYPDYYALYREPNFTWNKITQRNKNSLIFQENDVKIEGLGFGYSEEVGFSTVISAY 242

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
                I   + G+   QER ++   ++   +    LK
Sbjct: 243 NNQQRIFLAINGLQNKQERTKEVKRILEWAMTAFDLK 279


>gi|291530422|emb|CBK96007.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum 70/3]
          Length = 409

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 74/332 (22%), Positives = 145/332 (43%), Gaps = 18/332 (5%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMISMASELHAKPK----------YSSIVIDVNKNQMTGF 69
           G  Y+    ++   +   ++  +   + L A  +           ++IV +V+  Q+   
Sbjct: 17  GGYYMVLIKRITAGVTAFALAAVMQGASLTAFSEGDVSAVDSITKAAIVTEVSTGQVLYE 76

Query: 70  KQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
                R P AS+TK+M L I  E ++     ++T I  +  A   + S ++L      + 
Sbjct: 77  HNSHERLPMASVTKLMCLLIWAEEMEKGTFGMDTVITATARANAMDGSVIWLNVGEEMSA 136

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
              I +++  SAND   A  E+I+G+E+ F   M+ +A+++GM +T Y N  G       
Sbjct: 137 YDMIRSVVIASANDACVAVCEYITGTEEMFVERMNKRAQELGMSDTHYDNCVGFDSDTHY 196

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRN----RIITNHNKLLNKMHNIDGIKTGY 244
           T+A D A+L   + + +  Y ++F+ R    R       + N NK++ +   I G KTG 
Sbjct: 197 TSAYDTALLSAAVSE-YDCYNEFFATRLDYVREGERQTQLLNTNKMMQRYDGIIGGKTGT 255

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNL 304
           T  +G  +    +  +  + AV +G   S++R     +L+        L ++     D L
Sbjct: 256 TDKAGCCLAVWAKRGNMKLCAVALGCKESEQRFTACTDLLNYGFSGFEL-YRTAVDSDVL 314

Query: 305 SSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
           +  ++ + L  K+ +    +   I     S++
Sbjct: 315 TPVTVTEGLE-KQAEVRVKRLNTIVIPKGSSK 345


>gi|255020661|ref|ZP_05292723.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC
           51756]
 gi|254969897|gb|EET27397.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC
           51756]
          Length = 386

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 107/236 (45%), Gaps = 2/236 (0%)

Query: 54  YSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
            +++++DV  +Q+      + P  P+ L K+MT Y++ +      +  +  + VS  A  
Sbjct: 44  QAAVLLDVQTDQVLMDEHGNRPLNPSGLVKLMTAYLLLQAEHQGLVRPDQNVQVSDRAWH 103

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S+++++     T  Q    L+    ND +    + ++GS   F  LM+  A ++G++
Sbjct: 104 AQGSRMFIQPGLPVTVAQLERGLLIDGGNDAAIVIAQTVAGSVSGFVDLMNRDAAEMGLK 163

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           +T + N  GL   +Q +TA D A L  +L +N P   +     K+ Y +    N+N L  
Sbjct: 164 HTHFANPDGLPAPDQRSTALDVARLARILIENHPSVLQVAGQPKYTYNHITQYNYNPLAG 223

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +   I+G+  G   +  +++  S       +VAVV+G  +       A  L+    
Sbjct: 224 E-KGINGLGVGLASSKHWDLAVSASRDGRSLVAVVLGAASRSSAGADASALLHYGF 278


>gi|150396511|ref|YP_001326978.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae
           WSM419]
 gi|150028026|gb|ABR60143.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae
           WSM419]
          Length = 384

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 131/291 (45%), Gaps = 15/291 (5%)

Query: 28  IQLMGKILFLSIIM----ISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           ++ +  + FL+ I+    ++       K K    ++D     +   +  D P  PASL K
Sbjct: 3   MKWLAAVGFLAAIVSGQAVAQTPAFDTKAKQIY-LVDAETGTVLFSRDEDAPVPPASLAK 61

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALIT 137
           +M + ++FE L   +L  +T   VS+ A          S ++   K+       I     
Sbjct: 62  LMAMKVVFEALDKGELTPDTNFLVSEHAWRTGGAPSGTSTMFAAIKSRIRVADLIQGATV 121

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           + AND      E ++GSE  FA  M+ +A++IG+    +KNA+GL       T R+   L
Sbjct: 122 QLANDACIILAEGMAGSEPAFAERMTKRAREIGLPVATFKNATGLPHPGNTITMRELVAL 181

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              L +  P YY  +S  +F +   +  N N L+     +DG+ TG+    GF++  S++
Sbjct: 182 ARHLYEAHPNYYPLYSQPEFEWNKILQRNKNPLIAAKIGVDGLATGFAEGFGFSVAASMQ 241

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITS----FLEKKTLKHQQTHRKDNL 304
             +  +   + G+ + +ER +++  ++      F +++     +T  + ++
Sbjct: 242 RGERRVYLAMSGLESEKERIEESRRVLDWAMTAFEKRRIFSDGETIGEASV 292


>gi|268610236|ref|ZP_06143963.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus flavefaciens
           FD-1]
          Length = 386

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 114/273 (41%), Gaps = 18/273 (6%)

Query: 28  IQLMGKILFLSIIM--ISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
           I  +   + L +       A+E        +++I  +  ++   +   E    AS TK+M
Sbjct: 6   ITALAPFILLGVSSERKVSAAERPEVSARGAVLISADTGEIVFSENFSEKLPMASTTKIM 65

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T  +  E        L  +  V   A     S + L E    T     + ++  S ND +
Sbjct: 66  TTLLCLESGD-----LYDEFVVDSDAIHVEGSSMGLVEGDTVTKYALCVGMLLPSGNDAA 120

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A    ++GS + FA++M++KAK++G+ +T +   SGL      ++A D A+L     +N
Sbjct: 121 NACAVKLAGSLENFAVMMNDKAKELGLSHTYFVTPSGLEGDGHGSSAYDMAMLAREALRN 180

Query: 205 --FPQYYKYFSIRKFRYR----NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             F +     ++ +  +      R + N NKLL+    + G+KTG+T  +G  +V++   
Sbjct: 181 EIFREICSSENM-EIEFGAPPYKRWLKNTNKLLSMYDGVYGVKTGFTDEAGRCLVSACER 239

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
               ++ V +     ++     + +     E  
Sbjct: 240 DGKDLICVTL---NDRDDWNDHMAMYDYGFETA 269


>gi|319407217|emb|CBI80856.1| Penicillin-binding protein [Bartonella sp. 1-1C]
          Length = 390

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 75/277 (27%), Positives = 136/277 (49%), Gaps = 12/277 (4%)

Query: 30  LMGKILFLSIIMISMASELHAKP-KYSSI---VIDVNKNQMTGFKQDEPRY-PASLTKMM 84
           L+ K+LF  I ++    +   K  + S++   ++D N + +   KQ +  + PASL K+M
Sbjct: 3   LLLKVLFSLIWILIFNEQGQTKKFQTSALQLLILDDNTDTILFEKQSDVVFFPASLAKLM 62

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRS 139
           T  ++F  L+   L+   +  VS+ A  +       + ++ KEKT  +    +  L+  +
Sbjct: 63  TAEVVFYQLKKGLLNKTQKFKVSENAWRKGGAPSGATTMFAKEKTEISVFDLLHGLVIVN 122

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND +    E I+G++  FA LM+ +AK +G+ N+ + NA+GL +K Q TT RD   L  
Sbjct: 123 GNDAAITLAEGIAGNDANFAKLMNKRAKTLGLLNSHFVNATGLPEKGQFTTLRDIITLVR 182

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN--IDGIKTGYTRNSGFNIVTSLR 257
            + + +P YY  +    F +      N N L+ + ++  I+G+  GY+   GF+ V S  
Sbjct: 183 HIAREYPDYYALYREPNFTWNKITQRNKNSLIFQENDVKIEGLGFGYSEEVGFSTVISAY 242

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
                I   + G+   QER ++   ++   +    LK
Sbjct: 243 NNQQRIFLAINGLQNKQERTKEVKRILEWAMTAFDLK 279


>gi|257456802|ref|ZP_05621986.1| D-alanyl-D-alanine carboxypeptidase DacA [Treponema vincentii ATCC
           35580]
 gi|257445808|gb|EEV20867.1| D-alanyl-D-alanine carboxypeptidase DacA [Treponema vincentii ATCC
           35580]
          Length = 480

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 69/279 (24%), Positives = 128/279 (45%), Gaps = 23/279 (8%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            +  A    S++V+D     +   K  D+   PASLTK++ +Y + + ++  +++L+ +I
Sbjct: 78  PQPAAISARSAVVMDAASGALLFEKNPDQSIPPASLTKLVAMYTVMQAVERGEINLSDRI 137

Query: 105 PVSKTAATQN----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
              K +   N     S ++L +    T E+ +L +   S ND + A     +GS   F  
Sbjct: 138 IPPKESWAVNIPPGSSLMFLGKNQQVTVEELMLGVAVVSGNDAAVALAIHTAGSVAAFVQ 197

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-KYFSIRKFRY 219
            M+     +G+QNT +++ +GL  +   TTARD A    +  + +P++  ++ S R+  Y
Sbjct: 198 RMNEAVAALGLQNTHFEDVNGLS-EYNRTTARDFARFSAVYVRKYPEHLARFHSARELTY 256

Query: 220 R----------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
                      +      N LL+K+   DGIKTG+   SGFNI  + +   +  +AV++G
Sbjct: 257 PQPHNMLKSQTSFRQPATNTLLDKLDGCDGIKTGFIYESGFNIALTAQRDGNRFIAVILG 316

Query: 270 MPTSQERDQKALE------LITSFLEKKTLKHQQTHRKD 302
                  + KAL       L+       + ++ Q    +
Sbjct: 317 GAGKNMAEGKALREANGKILMEWTFSHFSTRYAQNFPLE 355


>gi|297582349|ref|YP_003698129.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           selenitireducens MLS10]
 gi|297140806|gb|ADH97563.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           selenitireducens MLS10]
          Length = 465

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 70/362 (19%), Positives = 144/362 (39%), Gaps = 60/362 (16%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKY-SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
              L    +  ++++ +  +E   +P   + I++D    ++   +  D+P  PAS+TKMM
Sbjct: 6   GYALAAVTVSAAVLVPTERAEASYEPTVDTVILVDAKSGRVLFERNIDQPLPPASMTKMM 65

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALITRSA 140
           + Y+I E +    +  +T +P+S   A+    ++ S + L+    +  E+   ++   SA
Sbjct: 66  SEYLILEAVNDGDISWDTNVPISDFLASLSHNRSLSNVPLRVDGEYNVEELYESVAIYSA 125

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ------------------------NTIY 176
           N  + A  E ISGSE  F   M+ K  ++G+                         +  +
Sbjct: 126 NASTMALAELISGSEGAFVSEMNEKGVELGLGTLMREAGGEYGLEDLGEISEEGLGSFQF 185

Query: 177 KNASGLHD--------------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N++GL +              ++   +AR  A L   L  ++P+      I    +R  
Sbjct: 186 VNSTGLPNRLLEGNHPEGTGAEEDNYMSARAAATLAYYLVNDYPEVLDVAGIPHKVFREG 245

Query: 223 I-----ITNHNKLLNK-------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
                 + N N ++            +DG+KTG+T  +GF    +       +V+VVMG 
Sbjct: 246 TGDAIDMPNWNNMIPGTENSHLDYEYVDGLKTGHTNAAGFTFTGTGEKDGQRLVSVVMGA 305

Query: 271 PTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
            + + R Q+   ++       T   ++ +      S    +++ + K +      +  +A
Sbjct: 306 DSIEHRFQETQRVLEWGFN--TFYEEEIYAAG--YSPDGFETIAVSKGEEEEVPLESTEA 361

Query: 331 KA 332
             
Sbjct: 362 IH 363


>gi|324325585|gb|ADY20845.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 374

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 132/294 (44%), Gaps = 19/294 (6%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +L +   +I + +        S+   ++++ +  ++   K + EP+  AS+T
Sbjct: 2   RRICVIITLLIMYASVIPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASIT 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +  ++ VS  A     S +YLK       E  +  L+ RS N
Sbjct: 62  KIMTALLAAESGK-----MKEKVLVSNEAVRVEGSAIYLKAGQKVKLEDLVYGLMLRSGN 116

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L   
Sbjct: 117 DAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTRY 176

Query: 201 LRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              N   + K F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+  
Sbjct: 177 AMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 235

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
                ++ V +   +  +     + L     E+   K      +  L+  + KK
Sbjct: 236 KDGLDLIVVTLSASSDWD---DHMNLFDKGFER--FKQTNVVGQGALAEITEKK 284


>gi|300853932|ref|YP_003778916.1| D-alanyl-D-alanine carboxypeptidase [Clostridium ljungdahlii DSM
           13528]
 gi|300434047|gb|ADK13814.1| D-alanyl-D-alanine carboxypeptidase precursor [Clostridium
           ljungdahlii DSM 13528]
          Length = 408

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 80/312 (25%), Positives = 138/312 (44%), Gaps = 30/312 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK---PKYSS---IVIDVNKNQMTGFKQDEPRYP 77
           ++R +     +LFL I   +    +HAK   P  S+   +++D    Q+   K  +  YP
Sbjct: 1   MKRIVTF--ALLFLLICSNNPYGVVHAKEMPPPVSADGAVILDAATGQLLYSKNPDTAYP 58

Query: 78  -ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS TK+MT  +  E       +LN ++ + K     + +++ L E    T +  +  L+
Sbjct: 59  PASTTKIMTALLTLE-----NTNLNDKVIIGKNPPNVDGTRVGLCEGEQLTVKDLLYGLL 113

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A  E I G+  KF + M+ +AK++G +NT + N +GL D++  T+ARD A+
Sbjct: 114 LASDNDCAEALAEHIGGTMDKFVVKMNKRAKELGAKNTNFVNPTGLFDESHKTSARDLAL 173

Query: 197 LGILLRKNFPQYYKYFSIRKFRYR-------NRIITNHNKLLNK-----MHNIDGIKTGY 244
           +   L K  P+Y K  +   +           R + N NKL+ K          G KTGY
Sbjct: 174 MMRALSK-HPEYSKIATTISYTIPATNKSPQPREVWNENKLIQKQSTYYYSGCLGGKTGY 232

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNL 304
           T  S  + V++       ++  ++     +     A+ L             + ++K  L
Sbjct: 233 TVQSFHSYVSTATRNGQQLIVALIHDKN-KTFFPDAVSLFNF--GFNNFTFTKLYQKGAL 289

Query: 305 SSTSLKKSLMIK 316
            +T  K  L I 
Sbjct: 290 VTTYNKDGLSIP 301


>gi|332981601|ref|YP_004463042.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis
           50-1 BON]
 gi|332699279|gb|AEE96220.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis
           50-1 BON]
          Length = 439

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 77/309 (24%), Positives = 127/309 (41%), Gaps = 45/309 (14%)

Query: 11  KKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSS--- 56
           KK  L  P   +YI         +   + I ++ A           + + + P  S+   
Sbjct: 2   KKKLLVIPMLILYI---------LALAAYIPVAYAEPTSNDTLADDATVLSPPAVSAKNL 52

Query: 57  IVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---AT 112
           I+ID            D+  YPAS+TK++T  I  E     + +L   + + + A     
Sbjct: 53  ILIDAKTGNALYSINPDQKAYPASITKILTAAIALE-----QGNLKDVVTIDEEASLGIP 107

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S + + +   FT EQ +  L+  S ND + A  + ISG+  +F  LM+ KAK+ G +
Sbjct: 108 AGSSAIVMDKGEQFTLEQLLYGLMLISGNDAAVAIAKHISGTTDEFVNLMNQKAKEWGAK 167

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI-------RKFRYRNRIIT 225
           N+ + N  G H+ N  TTA D A++        P++    S        +  R   R   
Sbjct: 168 NSHFANPHGFHNDNHYTTAYDMAMIARHAM-TIPKFRDIVSTTLYLDIPKTLRGDQRRWD 226

Query: 226 NHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           N N  +            GIKTGYT  +   +V S ++    ++AV+MG P+     + A
Sbjct: 227 NINFFVQPNSKYYYKGATGIKTGYTNQAHHTLVASAQHNGTELIAVLMGEPSKPVAWKDA 286

Query: 281 LELITSFLE 289
             L+     
Sbjct: 287 AALMDYGFN 295


>gi|291540307|emb|CBL13418.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis XB6B4]
          Length = 299

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 64/255 (25%), Positives = 104/255 (40%), Gaps = 23/255 (9%)

Query: 57  IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-QN 114
           IV++ +   +       E  YPAS+TK+MT  I  E        LN  +  S  A     
Sbjct: 30  IVMEASTGTVLYDCDSLEAHYPASITKIMTTLIALENSD-----LNDIVTFSDAAIDNTE 84

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S +        T EQ + A++  SAN+ + A  E + G+ + F  +M+ KAK++G QNT
Sbjct: 85  GSGIARDYGEQMTMEQCLYAVMLASANECAYAVAEHVGGTIENFVAMMNEKAKELGCQNT 144

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-------ITNH 227
            + N  GLHD+N  T   D A++     +N   +       ++             + NH
Sbjct: 145 HFANPHGLHDENHYTCCYDMALIARAAYQN-ETFRIIVGTARYTIPPTNKHAEQTDLQNH 203

Query: 228 NKLLNK-------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           N++L              G KTGYT  +   +VT        ++ VVM   +  +    +
Sbjct: 204 NEMLYPFQTNKYVYDGCTGGKTGYTNAANSTLVTYAERDGMTLICVVMNTQSPNQ-WLDS 262

Query: 281 LELITSFLEKKTLKH 295
             L     +   L +
Sbjct: 263 RNLFDYCFDNFQLFN 277


>gi|299542091|ref|ZP_07052407.1| D-alanyl-D-alanine carboxypeptidase precursor [Lysinibacillus
           fusiformis ZC1]
 gi|298725406|gb|EFI66054.1| D-alanyl-D-alanine carboxypeptidase precursor [Lysinibacillus
           fusiformis ZC1]
          Length = 443

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 74/341 (21%), Positives = 143/341 (41%), Gaps = 48/341 (14%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
           +F  I   + A         ++I+ID +  ++   +  D     AS+TKMMT Y++ + +
Sbjct: 21  IFAGIPAKANAETDLGLTVDAAILIDADSGKILFEQNADTSLGIASMTKMMTEYLLLDAI 80

Query: 94  QSKKLHLNTQIPVSKTAATQN----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            + K+  + +  V+      +     S + L+    +T  +   A+   SAN  + A  E
Sbjct: 81  DAGKVKWDQEYHVTDYTYRMSQNRALSNVPLRRDGSYTIRELYEAMAIYSANAATVAIAE 140

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------------QITTARDQA 195
            I+GSE +F  LM+ KA+++G++   + NA+GL++ +               +  A+  A
Sbjct: 141 TIAGSETEFLKLMNKKAEELGLEGYKFVNATGLNNADLFGMHPSGTGPEDENVMPAKSVA 200

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRN-----RIITNHNKLL----NKMHNIDGIKTGYTR 246
            L   L K+ P+  +   I K  +R        ++N N +L     +   +DG+KTG T 
Sbjct: 201 KLAYHLLKDHPKVLETSKIAKKTFREGTEDAIKMSNWNFMLPGLVYEYQGVDGLKTGTTN 260

Query: 247 NSGFNIVTSLRYKDDPIVAVVM------GMPTSQERDQKALELITSFLEK---------- 290
            +G     +       ++AVVM      G  + + R     +L      +          
Sbjct: 261 FAGHCFTGTAERNGTRLIAVVMKAVDAKGQGSYEARFDATAKLFNYGFSQFSKQEILPGN 320

Query: 291 KTLKHQQTHR----KDNLSSTSLKKSLMIKKLKRTYSQFKK 327
            T K+Q+T +    K++  S ++K+ +           +K 
Sbjct: 321 YTFKNQKTVKVTKGKEDKVSIAVKEPISFMIKSSDKDLYKP 361


>gi|206978265|ref|ZP_03239143.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           H3081.97]
 gi|217959045|ref|YP_002337593.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH187]
 gi|222095199|ref|YP_002529259.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1]
 gi|206743514|gb|EDZ54943.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           H3081.97]
 gi|217067033|gb|ACJ81283.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH187]
 gi|221239257|gb|ACM11967.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1]
          Length = 374

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 139/326 (42%), Gaps = 27/326 (8%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +L +   +I + +        S+   ++++    ++   K + EP+  AS+T
Sbjct: 2   RRICVIITLLIMYASVIPIPTYAKMTSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASIT 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +   + VS  A     S +YLK       E  +  L+ RS N
Sbjct: 62  KIMTALLAAESGK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGN 116

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L   
Sbjct: 117 DAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTRY 176

Query: 201 LRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              N   + K F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+  
Sbjct: 177 AMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 235

Query: 258 YKDDPIVAVVMGMPTSQ-----------ERDQKALELITSFLEKKTLKHQQ--THRKDNL 304
                ++ V +   +             +R ++   L    L + T K      + K++ 
Sbjct: 236 KDGLDLIVVTLSASSDWDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYTKNSF 295

Query: 305 SSTSLKKSLMIKKLKRTYSQFKKIDA 330
           S    ++      LK    +  K+  
Sbjct: 296 SVPLTEEEKKSVVLKVELDKSAKLVD 321


>gi|110800730|ref|YP_696485.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens ATCC 13124]
 gi|168206144|ref|ZP_02632149.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens E str. JGS1987]
 gi|168210835|ref|ZP_02636460.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens B str. ATCC 3626]
 gi|168215430|ref|ZP_02641055.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens NCTC 8239]
 gi|169343584|ref|ZP_02864583.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens C str. JGS1495]
 gi|110675377|gb|ABG84364.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens ATCC 13124]
 gi|169298144|gb|EDS80234.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens C str. JGS1495]
 gi|170662405|gb|EDT15088.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens E str. JGS1987]
 gi|170711129|gb|EDT23311.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens B str. ATCC 3626]
 gi|182382120|gb|EDT79599.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens NCTC 8239]
          Length = 291

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 63/238 (26%), Positives = 120/238 (50%), Gaps = 11/238 (4%)

Query: 56  SIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +I  D    ++   K        AS TK++T  +   Y       L+ ++ +SKTAA+  
Sbjct: 59  AIAYDAKNKKILYEKNAFRNVPMASTTKILTALVAINYSD-----LDEEVTISKTAASIR 113

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            SK+  +     T  + +  L+ +S ND + A  E I GS + F+ILM++ A+ +G++++
Sbjct: 114 GSKVGFRAGEKVTMRELLFGLMYKSGNDAAIAIAEHIGGSIENFSILMNDFARMLGLKDS 173

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF---RYR-NRIITNHNKL 230
            +++  GL  +   ++A D A+L     +  P + +    ++    +Y   R  +N NK+
Sbjct: 174 NFQSPHGLDSQMHFSSAYDLAVLMSKAMEE-PFFREISGTKEVGAEKYNFTRSYSNINKM 232

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           L ++ N +G KTGYT  +G  +V+S+ +    I+ VV+  PT  E  ++  E + +  
Sbjct: 233 LWRLPNANGGKTGYTGQAGKCLVSSVDHNGRNIIIVVLNCPTRWEATERVYEYVKANY 290


>gi|229138262|ref|ZP_04266857.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
 gi|229195769|ref|ZP_04322529.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
 gi|228587666|gb|EEK45724.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
 gi|228645154|gb|EEL01391.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
          Length = 378

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 139/326 (42%), Gaps = 27/326 (8%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +L +   +I + +        S+   ++++    ++   K + EP+  AS+T
Sbjct: 6   RRICVIITLLIMYASVIPIPTYAKMTSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASIT 65

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +   + VS  A     S +YLK       E  +  L+ RS N
Sbjct: 66  KIMTALLAAESGK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGN 120

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L   
Sbjct: 121 DAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTRY 180

Query: 201 LRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              N   + K F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+  
Sbjct: 181 AMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 239

Query: 258 YKDDPIVAVVMGMPTSQ-----------ERDQKALELITSFLEKKTLKHQQ--THRKDNL 304
                ++ V +   +             +R ++   L    L + T K      + K++ 
Sbjct: 240 KDGLDLIVVTLSASSDWDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYTKNSF 299

Query: 305 SSTSLKKSLMIKKLKRTYSQFKKIDA 330
           S    ++      LK    +  K+  
Sbjct: 300 SVPLTEEEKKSVVLKVELDKSAKLVD 325


>gi|229102172|ref|ZP_04232882.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
 gi|228681242|gb|EEL35409.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
          Length = 378

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 133/294 (45%), Gaps = 19/294 (6%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +L +   ++ + +        S+   ++++ +  ++   K + EP+  AS+T
Sbjct: 6   RRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQSSGRVLYGKAEHEPQKIASIT 65

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +   + VS  A     S +YLK       E  +  L+ RS N
Sbjct: 66  KIMTALLAAESGK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGN 120

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L   
Sbjct: 121 DAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKY 180

Query: 201 LRKNFPQYYKYFSIRKFRYR--NRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              N   + K F  +K++    +    N +KL+   +    G KTG+T+ +G  +VT+  
Sbjct: 181 AMGN-ETFKKIFGTKKYKSNSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 239

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
                ++ V +   +  +     + L     E+   K  +   +  L+  + KK
Sbjct: 240 KDGLDLIVVTLSASSDWD---DHMNLFDKGFER--FKQTKVLGQGALAEINEKK 288


>gi|291550439|emb|CBL26701.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus torques L2-14]
          Length = 452

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 70/272 (25%), Positives = 116/272 (42%), Gaps = 19/272 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  EL      S++++D +  ++   K   E R  AS TK+MT  +  E         N 
Sbjct: 57  VPDELKQLYALSAVLMDADSGRILFSKNGQEERAMASTTKIMTCILALESSIMD--SENQ 114

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + VS  AATQ    L +     F  +  + +L+  S ND   A  E ++GS +KFA LM
Sbjct: 115 IVTVSDQAATQPKVHLGMVAGERFYLKDLLYSLMLESHNDSGVAIAEAVAGSVEKFADLM 174

Query: 163 SNKAKKIGMQNTIYKNASGLHDKN----QITTARDQAILGILLRKNF---PQYYKYFSIR 215
           + KA+ IG  +T +   +GL   +      TTA D A +      N      +       
Sbjct: 175 NQKARTIGCYSTYFITPNGLDAADSNGIHHTTAEDLARIMRYCIMNSKKQEDFLTITRTE 234

Query: 216 KFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM- 268
            +++      R+    NHN  LN M      KTG+T ++G+  V +LR  +   +  ++ 
Sbjct: 235 TYQFQDVEGKRSFSCYNHNAFLNMMDGALSGKTGFTSDAGYCYVGALRRDERTFIVALLA 294

Query: 269 -GMPTSQE-RDQKALELITSFLEKKTLKHQQT 298
            G P ++  +      L+T  L+    K  + 
Sbjct: 295 CGWPNNKSYKWSDMRTLMTYALDHYQYKTFEI 326


>gi|225572263|ref|ZP_03781127.1| hypothetical protein RUMHYD_00557 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040268|gb|EEG50514.1| hypothetical protein RUMHYD_00557 [Blautia hydrogenotrophica DSM
           10507]
          Length = 357

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 68/282 (24%), Positives = 127/282 (45%), Gaps = 24/282 (8%)

Query: 59  IDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           +D +  ++   K  +  R  AS TK++T  +  E         +  + VS  AA Q   +
Sbjct: 1   MDGSNGRVLYEKDGKTVRANASTTKVLTCILALELGDG-----DDVVTVSAKAAAQPDVQ 55

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           L + E   +  E  + +L+ +S ND + A  E + GS + FA +M++KAK+IG  +T + 
Sbjct: 56  LNIVEGETYYLEDLLYSLMLKSHNDSAVAIAEHLGGSVEGFAKMMNDKAKEIGCTDTHFV 115

Query: 178 NASGLHDKN----QITTARDQAILGILLRKNFPQYYKYFSIRKFRY------RNRIITNH 227
             +GL   +      TTA D A++      N P +      R++ +      R  ++TN 
Sbjct: 116 TPNGLDASDTGGKHGTTATDLALIMRYAISN-PAFLTIAQTREYSFSDISGKRQFVVTNA 174

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM--GMPTSQE-RDQKALELI 284
           N  L+ M  +   KTG+T ++G+  V + +      +  ++  G P ++  + Q A  L+
Sbjct: 175 NAFLDMMDGVIAGKTGFTADAGYCYVCAWQRDGRTFIVALLACGWPGNKSYKWQDARTLL 234

Query: 285 TSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
              +E   L      ++ +L   ++K    I K  + Y   +
Sbjct: 235 DYGMENYQLAAY--WKEPSLHVITVKDG--IPKSGQLYDTAR 272


>gi|158320612|ref|YP_001513119.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii
           OhILAs]
 gi|158140811|gb|ABW19123.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii
           OhILAs]
          Length = 371

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 74/269 (27%), Positives = 120/269 (44%), Gaps = 19/269 (7%)

Query: 34  ILFLSIIMISMASELHAKPK--------YSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMM 84
             F+ I M+ MA+  + + K         S+IV+DV   ++   K    + P AS TK+M
Sbjct: 6   FCFIIIFMMLMANPSYGQEKMKNIQTGGKSAIVMDVETGRILYEKNMHLKLPMASTTKIM 65

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T  +  E      + L  ++ +++ A     S +YL+          +  L+ RS ND +
Sbjct: 66  TALLAIE-----NIPLEKRVKINQNAQGIEGSSIYLRANEEVKAIDLVYGLMLRSGNDAA 120

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A    +SGS + FA LM+ +A KIG +NT + N  GLH +N  TTA D A++     KN
Sbjct: 121 AAIAYEVSGSIEAFADLMNERANKIGAKNTNFTNPHGLHHENHYTTAYDLALITREALKN 180

Query: 205 --FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
             F +  K       R   +   N N  L      DG+KTGYT  SG  +V+S   +   
Sbjct: 181 SVFKEVVKTKFWTADRNEYKHFANKNIGLEICEGGDGVKTGYTTRSGRCLVSSASREGMQ 240

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKK 291
            +++ +             +L+    ++ 
Sbjct: 241 FISITL---DDYNWFDTNKKLLDEGFKRY 266


>gi|317133056|ref|YP_004092370.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ethanoligenens
           harbinense YUAN-3]
 gi|315471035|gb|ADU27639.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ethanoligenens
           harbinense YUAN-3]
          Length = 389

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 70/269 (26%), Positives = 114/269 (42%), Gaps = 19/269 (7%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLY 87
            L   +LF+++   + A+ + A+      +++    ++       E    AS TK+MT  
Sbjct: 8   CLAAVLLFVTVGPSARAAAVSARAYA---LVEQTTGRVIAGADMGERLPMASTTKIMTGL 64

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           +  E  +     L+    V   A T   S + L+     T    +  L+  S ND + + 
Sbjct: 65  LACESGE-----LDKTFTVPPEALTVEGSSMGLQPDESITLRALVYGLLLESGNDAANSI 119

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
              + GS + FA  M+ KA+ + + +T + N SGL      TTA D A LG    KN P 
Sbjct: 120 AMLLGGSVEGFAAQMNAKARALHLNDTHFANPSGLGADGHYTTALDLARLGAYAMKN-PD 178

Query: 208 YYKYFSIRKFR--YRN----RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           + +    R+    Y      R + NHN+LL       GIKTG+T+ SG  +V+  R    
Sbjct: 179 FAQIVGTRRATVSYNGIANARTLINHNRLLGSYDGEIGIKTGFTKKSGRCLVSCARRGGV 238

Query: 262 PIVAVVMGMPTSQERDQKALELITSFLEK 290
            +V   +  P    RD  A  L+     +
Sbjct: 239 TLVLATLNDPDDW-RDHAA--LLDQGFSE 264


>gi|291536086|emb|CBL09198.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis M50/1]
          Length = 414

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 61/255 (23%), Positives = 120/255 (47%), Gaps = 22/255 (8%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             +++++D +  ++   K   +    AS TK++T  I  E        L++++ VS  AA
Sbjct: 48  AKAAVLMDADSGRILYEKNGHQAMANASTTKILTCIIALENCD-----LDSEVTVSTLAA 102

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +Q    L ++E   F  +  +  L+  S ND + A  E I+G+   FA LM++KA++IG 
Sbjct: 103 SQPKVHLGMREGQKFYLKDLLYGLMLESYNDCAVAIAEHIAGTTGDFAKLMNDKAEEIGC 162

Query: 172 QNTIYKNASGLHDKN----QITTARDQAILGILLRKNFPQYYKYFSIR---KFRY----- 219
           +++ +   +GL  KN      TTA D +++     K      ++ +I    ++++     
Sbjct: 163 EDSYFITPNGLDAKNENGFHHTTAADLSLIMRYCIKTSEMAEQFLTITREGQYQFSDIDG 222

Query: 220 -RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM--GMPTSQE- 275
             +    NHN  L  M      KTG+T N+G+  V +L+  D   +  ++  G P ++  
Sbjct: 223 KNSYTCCNHNAFLQMMDGALSGKTGFTGNAGYCYVGALKRDDRTFIVALLACGWPNNKTY 282

Query: 276 RDQKALELITSFLEK 290
           +     +L+   + +
Sbjct: 283 KWADTKKLMQYGISR 297


>gi|290968005|ref|ZP_06559554.1| serine-type D-Ala-D-Ala carboxypeptidase [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781911|gb|EFD94490.1| serine-type D-Ala-D-Ala carboxypeptidase [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 321

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 64/270 (23%), Positives = 120/270 (44%), Gaps = 17/270 (6%)

Query: 30  LMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMT 85
           +MG   F   +    +    A+P     S+ ++DVN  ++   +  ++  +PAS TK++T
Sbjct: 24  VMGTEAFSVPLPEVSSPTAEAEPVTAAESACLLDVNTGKILFSYHGNKWVHPASTTKIVT 83

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           L          +  L   + +S+ A    PS+L L      +  + +  ++  S ND + 
Sbjct: 84  LLTAL---AQGRERLEQPLYISRQAVETEPSRLGLATTDKVSVREALTGMMVVSGNDAAV 140

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E + GS   FA +M+ +AKK+G  ++++ N +GL   +  TTA D A +     KN+
Sbjct: 141 AVAETLGGSVPAFADMMNGQAKKMGATHSLFLNPNGLTQVHHHTTAIDMARMAAYGMKNY 200

Query: 206 PQYYKYFSIRKFR------YRNRIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRY 258
            ++     ++ +       ++ + +   N+ L       DGIKTGYTR +G  +V S   
Sbjct: 201 AEFRDIVGLKSYTMKYLDAHKPKTVYTTNRFLRSGYIGADGIKTGYTRAAGPCLVASATR 260

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFL 288
               ++  +        R Q A  ++    
Sbjct: 261 NGHTLIVALF---NDAARWQDAARILDYGF 287


>gi|229087877|ref|ZP_04219989.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44]
 gi|228695432|gb|EEL48305.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44]
          Length = 426

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 68/341 (19%), Positives = 152/341 (44%), Gaps = 31/341 (9%)

Query: 22  IYIQRNIQLMGKIL--FLSI-IMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           +Y+++ + ++   L  F S+ +  S A E       ++I+ D +  ++   +  DE    
Sbjct: 1   MYMRKILSILLAFLLSFSSLGVTTSHAEEKIHIEAAAAILFDADTGKILHEQNPDELLAI 60

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGIL 133
           AS++K++ +Y + E ++  K+  +T++ +S  A         S +  ++   +T ++   
Sbjct: 61  ASMSKLIVVYSVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYTVKELYH 120

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN------- 186
           +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ +       
Sbjct: 121 SIVIFSANGSSIALAELLAGSEKNFLNLANEYAKKLGLKKYKFVNATGLNNADLKGKHPE 180

Query: 187 -------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RIITNHNKLLNK- 233
                     +ARD  IL  ++   +P+       R   + +       + N N +L   
Sbjct: 181 GTDPNGENSLSARDMGILSKIIITKYPEMLADTKQRFRNFPDNHPKPIRMENWNWMLPGA 240

Query: 234 ---MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                  DG+KTG +  +G+    + +  D  +++V++   +  ER  ++ ELI      
Sbjct: 241 AFAYEGTDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMDERFTESRELIDYGFNN 300

Query: 291 KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
              +  +  + + +S    K+  +    ++  +   +  +K
Sbjct: 301 FEKQKLKIDKNNTISVVKGKEDTVTVTPEKEITVITQKGSK 341


>gi|291545877|emb|CBL18985.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. SR1/5]
          Length = 277

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 64/254 (25%), Positives = 120/254 (47%), Gaps = 17/254 (6%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTL 86
           + L+  +L +  I    A++       S++++D    ++   K+    R  AS TK+MT 
Sbjct: 4   VVLVTAVLIICQIFPVKAADDENLYALSAVLMDGENGRVLYGKEAYKGRPNASTTKVMTC 63

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            +  E  +      +  + VS  AA+Q  ++L ++E   F  E  + +L+ +S ND + A
Sbjct: 64  ILALELAKG-----DDYVQVSGNAASQPQTRLGMREGQQFYLEDLLYSLMLKSHNDSAVA 118

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN----QITTARDQAILGILLR 202
             E I GS + FA  M+ KAK++G ++T +   +GL  ++      TTARD A++     
Sbjct: 119 IAEHIGGSVEGFAEKMNEKAKELGCKDTHFVTPNGLDGEDEGGIHHTTARDLALIMAYAI 178

Query: 203 KNFPQYYKYFSIRKFRYRNR------IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           KN   +      R + + +        + N N  L+    +   KTG+T N+G+  V ++
Sbjct: 179 KN-ATFVHITQTRDYTFTDISGKKHYSVHNTNAFLDMETGVISGKTGFTGNAGYCYVCAV 237

Query: 257 RYKDDPIVAVVMGM 270
           R  +   +  ++G 
Sbjct: 238 RQDERLFIVALLGC 251


>gi|18310783|ref|NP_562717.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens str.
           13]
 gi|168214376|ref|ZP_02640001.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens CPE str. F4969]
 gi|18145464|dbj|BAB81507.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens str.
           13]
 gi|170714164|gb|EDT26346.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens CPE str. F4969]
          Length = 291

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 63/238 (26%), Positives = 120/238 (50%), Gaps = 11/238 (4%)

Query: 56  SIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +I  D    ++   K        AS TK++T  +   Y       L+ ++ +SKTAA+  
Sbjct: 59  AIAYDAKNKKILYEKNAFRNVPMASTTKILTALVAINYSD-----LDEEVTISKTAASIR 113

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            SK+  +     T  + +  L+ +S ND + A  E I GS + F+ILM++ A+ +G++++
Sbjct: 114 GSKVGFRAGEKVTMRELLFGLMYKSGNDAAIAIAEHIGGSIENFSILMNDFARMLGLKDS 173

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF---RYR-NRIITNHNKL 230
            +++  GL  +   ++A D A+L     +  P + +    ++    +Y   R  +N NK+
Sbjct: 174 NFQSPHGLDSQMHFSSAYDLAVLMSKAMEE-PFFREISGTKEVGAEKYNFTRSYSNINKM 232

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           L ++ N +G KTGYT  +G  +V+S+ +    I+ VV+  PT  E  ++  E + +  
Sbjct: 233 LWRLPNANGGKTGYTGQAGKCLVSSVDHNGRNIIIVVLNCPTRWEATERVYEYVKANY 290


>gi|240146057|ref|ZP_04744658.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis
           L1-82]
 gi|257201873|gb|EEV00158.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis
           L1-82]
          Length = 414

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 61/255 (23%), Positives = 120/255 (47%), Gaps = 22/255 (8%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             +++++D +  ++   K   +    AS TK++T  I  E        L++++ VS  AA
Sbjct: 48  AKAAVLMDADSGRILYEKNGHQAMANASTTKILTCIIALENCD-----LDSEVTVSTLAA 102

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +Q    L ++E   F  +  +  L+  S ND + A  E I+G+   FA LM++KA++IG 
Sbjct: 103 SQPKVHLGMREGQKFYLKDLLYGLMLESYNDCAVAIAEHIAGTTGDFAKLMNDKAEEIGC 162

Query: 172 QNTIYKNASGLHDKN----QITTARDQAILGILLRKNFPQYYKYFSIR---KFRY----- 219
           +++ +   +GL  KN      TTA D +++     K      ++ +I    ++++     
Sbjct: 163 EDSYFITPNGLDAKNENGFHHTTAADLSLIMRYCIKTSEMAEQFLTITREGQYQFSDIDG 222

Query: 220 -RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM--GMPTSQE- 275
             +    NHN  L  M      KTG+T N+G+  V +L+  D   +  ++  G P ++  
Sbjct: 223 KNSYTCCNHNAFLQMMDGALSGKTGFTGNAGYCYVGALKRDDRTFIVALLACGWPNNKTY 282

Query: 276 RDQKALELITSFLEK 290
           +     +L+   + +
Sbjct: 283 KWADTKKLMQYGISR 297


>gi|110801499|ref|YP_699085.1| penicillin-binding protein 5* precursor [Clostridium perfringens
           SM101]
 gi|110682000|gb|ABG85370.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens SM101]
          Length = 291

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 63/238 (26%), Positives = 120/238 (50%), Gaps = 11/238 (4%)

Query: 56  SIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +I  D    ++   K        AS TK++T  +   Y       L+ ++ +SKTAA+  
Sbjct: 59  AIAYDAKNKKILYEKNAFRNVPMASTTKILTALVAINYSD-----LDEEVTISKTAASIR 113

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            SK+  +     T  + +  L+ +S ND + A  E I GS + F+ILM++ A+ +G++++
Sbjct: 114 GSKVGFRAGEKVTMRELLFGLMYKSGNDAAIAIAEHIGGSIENFSILMNDFARMLGLKDS 173

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF---RYR-NRIITNHNKL 230
            +++  GL  +   ++A D A+L     +  P + +    ++    +Y   R  +N NK+
Sbjct: 174 NFQSPHGLDSQMHFSSAYDLAVLMSKAMEE-PFFREISGTKEVGAEKYNFTRSYSNINKM 232

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           L ++ N +G KTGYT  +G  +V+S+ +    I+ VV+  PT  E  ++  E + +  
Sbjct: 233 LWRLPNANGGKTGYTGQAGKCLVSSVDHNGRNIIIVVLNCPTRWEATERVYEYVKANY 290


>gi|291563060|emb|CBL41876.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
           SS3/4]
          Length = 461

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 68/316 (21%), Positives = 134/316 (42%), Gaps = 37/316 (11%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
            ++++++D +  ++   K ++   P AS TK+MT  +  E   S    L+T++ +S  AA
Sbjct: 98  AHAAVLLDGDTGRILYGKNEKKVLPMASTTKIMTCILALEN--SG---LDTEVEISDRAA 152

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +    KL+  +   +  E  + +L+  S ND + A  E + GS + FA +M+ KA ++G 
Sbjct: 153 SMPEVKLHAGKGEKYRLEDLLYSLMLESHNDTAVAIAEAVGGSVENFADMMNGKAAELGC 212

Query: 172 QNTIYKNASGLHDKN------QITTARDQAILGILLRKNFPQYYKYFSIRKFR------- 218
            +T +   +GL  ++        TTA D A +        P   ++ +I +         
Sbjct: 213 DDTYFLTPNGLDAEDKESGKIHSTTAADLARILRYCISLSPAKEEFLAITRAPSHAFSDL 272

Query: 219 --YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM---PTS 273
              R+    NHN LL  M      KTG+T  +G+  V +++  +   +A ++     P  
Sbjct: 273 SGTRSFSCVNHNALLTSMEGAVSGKTGFTGKAGYCYVGAVKKDEKLFIAALLDCGWPPHR 332

Query: 274 QERDQKALELITSF--------LEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKR----- 320
             + Q   +L+T          +EK  L  +     +N   + +K  +  +   R     
Sbjct: 333 TYKWQDMRKLVTYGDKNFEYKEIEKTGLGEETAVLVENGVESRVKVEIGTEHADRNSLRV 392

Query: 321 TYSQFKKIDAKAHSTQ 336
                +K+  +    +
Sbjct: 393 LLGNDEKVQVRTKIAK 408


>gi|160892713|ref|ZP_02073503.1| hypothetical protein CLOL250_00243 [Clostridium sp. L2-50]
 gi|156865754|gb|EDO59185.1| hypothetical protein CLOL250_00243 [Clostridium sp. L2-50]
          Length = 451

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 64/256 (25%), Positives = 110/256 (42%), Gaps = 22/256 (8%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I++D    ++   K  +E R  AS TK++T  +  EY        +  + VS  AA
Sbjct: 85  ALSAILLDGKNGRVLYDKAGEEVRANASTTKILTCILALEYGDP-----DDIVIVSSYAA 139

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                +L ++E   +  +  + +L+  S ND + A  E+I GS + FA LM+ KA ++G 
Sbjct: 140 KMPDVQLNIREGEEYRLKDLLYSLMLESHNDSAVAIAEYIGGSVEAFADLMNRKAIEVGC 199

Query: 172 QNTIYKNASGLHDKN----QITTARDQAILGILLRKNFP---QYYKYFSIRKFRYRN--- 221
            NT +   +GL  K+      TTA D A +     +  P   Q+        + + N   
Sbjct: 200 TNTHFITPNGLDAKDEYGIHGTTAEDLARIMRYCIRESPKREQFLAITRTATYSFTNVGG 259

Query: 222 ---RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM---PTSQE 275
                 +NHN  LN M      KTG+T ++G+  V +L      ++  ++G         
Sbjct: 260 TRSFSCSNHNAFLNMMDGALTGKTGFTGSAGYCYVGALERDGKILIVALLGCGWPGNKTY 319

Query: 276 RDQKALELITSFLEKK 291
           +     +L+   L   
Sbjct: 320 KWADTKKLMNYGLANY 335


>gi|306830534|ref|ZP_07463702.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304427328|gb|EFM30432.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 416

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 74/345 (21%), Positives = 146/345 (42%), Gaps = 33/345 (9%)

Query: 22  IYIQRNIQLMGKIL-FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PAS 79
           + +++        L FL++     A +        +I ++    ++   K        AS
Sbjct: 3   LLMKKIFAFFAIFLTFLAVGSKVSADDDFDVAAEHAIAVEATTGKVLYEKDATTPDGIAS 62

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILAL 135
           +TK++T+Y++++ +   KL  +T++ +S  A    A  + S + ++ + Y T EQ + A 
Sbjct: 63  MTKILTVYLVYKAIDEGKLSWDTKVSISDYAYDLTANSDASNVPMEAREY-TVEQLVNAA 121

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD----------- 184
           +  SAN  + A  E I G+E KF  +M  + ++ G+ +    NASGL++           
Sbjct: 122 MVASANSAAIALAEQIGGTESKFVDMMKAQLEEWGITDATIVNASGLNNSYLGDNIYPGS 181

Query: 185 ---KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NI 237
                 + +ARD AI+   L   +P   K  S     +    +  +N +L  M      +
Sbjct: 182 SSTDENMMSARDVAIIAQHLITEYPDILKITSQTTADFDGTTMNTYNYMLEGMPYERSGV 241

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE----RDQKALELIT---SFLEK 290
           DG+KTG T  +G + V +       I++VVM     ++    R +   +L+    S  E 
Sbjct: 242 DGLKTGTTELAGASFVATSTENGMRIISVVMNADGWEDDEYARFEATNDLLEYVKSNYEM 301

Query: 291 KTL-KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
            TL K  ++++    +    K   +           ++I+    +
Sbjct: 302 VTLVKAGKSYQSSKATVNDGKAKSVAAVASEDLKVVRRINTDVSA 346


>gi|228997557|ref|ZP_04157170.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
 gi|228762185|gb|EEM11118.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
          Length = 329

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 131/283 (46%), Gaps = 15/283 (5%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           L+  IL            + AK   S+I+ID    ++   K  D P   ASL+KMMT YI
Sbjct: 8   LITAILVFYFYFYVNGPLIKAK---SAILIDATSEEIVYKKNEDTPFSSASLSKMMTEYI 64

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           + E +Q  K+  + ++ +S ++     + + +  +   T      A++  S N  +    
Sbjct: 65  VLEQIQKGKIKWDDRVKISNSSIQMEGNNIDITFEDQITIRDLFHAMVLASDNSAAVFLA 124

Query: 149 EFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHD--KNQITTARDQAILGILLRKNF 205
           E IS +E+ F  LM+ KA ++G+ N T + NA+G+ +  +    TA D + L   L  ++
Sbjct: 125 EHISKNEQDFTNLMNEKATQLGLSNKTYFANATGVINKQEESKITALDASKLAQHLITDY 184

Query: 206 PQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGYTRNSGFNIVTSLR 257
           P   +   +    F +++  + N NK+L       K   +DG++T ++  +G++  ++ +
Sbjct: 185 PMILEITQLTSYQFTFKDIHVFNTNKMLYSLDSKIKFKGVDGLQTSFSNPAGYSFASTAK 244

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
             +   +++VM          +A +L T   E   L   Q+ +
Sbjct: 245 QGNKRFISIVMKANGENSAFIEAKKLFTYGSEPTHLPSLQSVK 287


>gi|229005188|ref|ZP_04162908.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4]
 gi|228756048|gb|EEM05373.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4]
          Length = 329

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 131/283 (46%), Gaps = 15/283 (5%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           L+  IL            + AK   S+I+ID    ++   K  D P   ASL+KMMT YI
Sbjct: 8   LITAILVFYFYFYVNGPLIKAK---SAILIDATSEEIVYKKNEDTPFSSASLSKMMTEYI 64

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           + E +Q  K+  + ++ +S ++     + + +  +   T      A++  S N  +    
Sbjct: 65  VLEQIQKGKIKWDDRVKISNSSIQMEGNNIDITFEDQITIRDLFHAMVLASDNSAAVFLA 124

Query: 149 EFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHD--KNQITTARDQAILGILLRKNF 205
           E IS +E+ F  LM+ KA ++G+ N T + NA+G+ +  +    TA D + L   L  ++
Sbjct: 125 EHISKNEQDFTNLMNEKATQLGLSNKTYFANATGVINKQEESKITALDASKLAQHLITDY 184

Query: 206 PQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGYTRNSGFNIVTSLR 257
           P   +   +    F +++  + N NK+L       K   +DG++T ++  +G++  ++ +
Sbjct: 185 PMILEITQLTSYQFTFKDIHVFNTNKMLYSLDSKIKFKGVDGLQTSFSNPAGYSFASTAK 244

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
             +   +++VM          +A +L T   E   L   Q+ +
Sbjct: 245 QGNKRFISIVMKANGENSAFIEAKKLFTYGSEPTHLPSLQSVK 287


>gi|229074761|ref|ZP_04207780.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18]
 gi|228708359|gb|EEL60513.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18]
          Length = 378

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 132/294 (44%), Gaps = 19/294 (6%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +L +   ++ + +        S+   ++++ +  ++   K + EP+  AS+T
Sbjct: 6   RRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQSSGRVLYGKAEHEPQKIASIT 65

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +   + VS  A     S +YLK       E  +  L+ RS N
Sbjct: 66  KIMTALLAAESGK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGN 120

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L   
Sbjct: 121 DAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKY 180

Query: 201 LRKNFPQYYKYFSIRKFRYR--NRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              N   + K F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+  
Sbjct: 181 AMGN-ETFKKIFGTKTYKSNSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 239

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
                ++ V +   +  +     + L     E+   K  +   +  L+  + KK
Sbjct: 240 KDGLDLIVVTLSASSDWD---DHMNLFDKGFER--FKQTKVLGQGALAEINEKK 288


>gi|229096060|ref|ZP_04227034.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
 gi|229115016|ref|ZP_04244427.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
 gi|228668432|gb|EEL23863.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
 gi|228687352|gb|EEL41256.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
          Length = 378

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 132/294 (44%), Gaps = 19/294 (6%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +L +   ++ + +        S+   ++++ +  ++   K + EP+  AS+T
Sbjct: 6   RRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQSSGRVLYGKAEHEPQKIASIT 65

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +   + VS  A     S +YLK       E  +  L+ RS N
Sbjct: 66  KIMTALLAAESGK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGN 120

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L   
Sbjct: 121 DAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKY 180

Query: 201 LRKNFPQYYKYFSIRKFRYR--NRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              N   + K F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+  
Sbjct: 181 AMGN-ETFKKIFGTKTYKSNSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 239

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
                ++ V +   +  +     + L     E+   K  +   +  L+  + KK
Sbjct: 240 KDGLDLIVVTLSASSDWD---DHMNLFDKGFER--FKQTKVLGQGALAEINEKK 288


>gi|291537069|emb|CBL10181.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis M50/1]
          Length = 468

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 64/255 (25%), Positives = 104/255 (40%), Gaps = 23/255 (9%)

Query: 57  IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-QN 114
           IV++ +   +       E  YPAS+TK+MT  I  E        LN  +  S  A     
Sbjct: 50  IVMEASTGTVLYDCDSLEAHYPASITKIMTTLIALENSD-----LNDIVTFSDAAIDNTE 104

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S +        T EQ + A++  SAN+ + A  E + G+ + F  +M+ KAK++G QNT
Sbjct: 105 GSGIARDYGEQMTMEQCLYAVMLASANECAYAVAEHVGGTIENFVAMMNEKAKELGCQNT 164

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-------ITNH 227
            + N  GLHD+N  T   D A++     +N   +       ++             + NH
Sbjct: 165 HFANPHGLHDENHYTCCYDMALIARAAYQN-ETFRIIVGTARYTIPPTNKHAEQTDLQNH 223

Query: 228 NKLLNK-------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           N++L              G KTGYT  +   +VT        ++ VVM   +  +    +
Sbjct: 224 NEMLYPFQTNKYVYDGCTGGKTGYTNAANSTLVTYAERDGMTLICVVMNTQSPNQ-WLDS 282

Query: 281 LELITSFLEKKTLKH 295
             L     +   L +
Sbjct: 283 RNLFDYCFDNFQLFN 297


>gi|288904540|ref|YP_003429761.1| penicillin-binding protein 5 (D-alanyl-D-alanine carboxypeptidase)
           [Streptococcus gallolyticus UCN34]
 gi|325977511|ref|YP_004287227.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288731265|emb|CBI12815.1| putative penicillin-binding protein 5 (D-alanyl-D-alanine
           carboxypeptidase) [Streptococcus gallolyticus UCN34]
 gi|325177439|emb|CBZ47483.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein
           5/6) [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 412

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 145/343 (42%), Gaps = 33/343 (9%)

Query: 24  IQRNIQLMGKIL-FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLT 81
           +++        L FL++     A +        +I ++    ++   K        AS+T
Sbjct: 1   MKKIFAFFAIFLTFLAVGSKVSADDDFDVAAEHAIAVEATTGKVLYEKDATTPDGIASMT 60

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALIT 137
           K++T+Y++++ +   KL  +T++ +S  A    A  + S + ++ + Y T EQ + A + 
Sbjct: 61  KILTVYLVYKAIDEGKLSWDTKVSISDYAYDLTANSDASNVPMEAREY-TVEQLVNAAMV 119

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------------- 184
            SAN  + A  E I G+E KF  +M  + ++ G+ +    NASGL++             
Sbjct: 120 ASANSAAIALAEQIGGTESKFVDMMKAQLEEWGITDATIVNASGLNNSYLGDNIYPGSSS 179

Query: 185 -KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDG 239
               + +ARD AI+   L   +P   K  S     +    +  +N +L  M      +DG
Sbjct: 180 TDENMMSARDVAIIAQHLITEYPDILKITSQTTADFDGTTMNTYNYMLEGMPYERSGVDG 239

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE----RDQKALELIT---SFLEKKT 292
           +KTG T  +G + V +       I++VVM     ++    R +   +L+    S  E  T
Sbjct: 240 LKTGTTELAGASFVATSTENGMRIISVVMNADGWEDDEYARFEATNDLLDYVKSNYEMVT 299

Query: 293 L-KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
           L K  ++++    +    K   +           ++I+    +
Sbjct: 300 LVKAGKSYQSSKATVNDGKAKSVAAVASEDLKVVRRINTDVSA 342


>gi|291614764|ref|YP_003524921.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sideroxydans
           lithotrophicus ES-1]
 gi|291584876|gb|ADE12534.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sideroxydans
           lithotrophicus ES-1]
          Length = 268

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 65/271 (23%), Positives = 127/271 (46%), Gaps = 21/271 (7%)

Query: 31  MGKILFLSIIMIS---MASELHAKP---KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMM 84
           M K LF+ + +++    A+     P     ++ ++++N   +   + D    PASLTK+M
Sbjct: 1   MRKALFIGLWLLANTVQATTAQPDPFPEVATAYLVELNGKAIWAKQPDRRLPPASLTKLM 60

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T  ++ E     +   +  + V+ +A  +  +++ LK    F  +  + A +  SAND  
Sbjct: 61  TALLVLE-----RTRPDDIVTVTPSATHETGTRIGLKTGERFHVQDLLAAALLPSANDAC 115

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  + + G E  F   M+ +A ++GM+NT + NA G       ++A+D +IL   L K 
Sbjct: 116 QALADHLDGDETGFVARMNQRAHELGMRNTHFANACGHDKARHYSSAKDLSILAHALLK- 174

Query: 205 FPQYYKYFSIRKFRYRN------RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
           +P      S RK +          I+ + N L+ +     GIKTGYT N+G  +V   + 
Sbjct: 175 YPSLLDVTSQRKLQIATLDGQHRYILESKNALIGRYDGAIGIKTGYTPNAGKCLVAYAKR 234

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLE 289
             + ++ +++      +R   A++++    +
Sbjct: 235 DGNAVLFIML---HGHDRWWDAVDVLDLAFD 262


>gi|228991455|ref|ZP_04151407.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
           12442]
 gi|228768257|gb|EEM16868.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
           12442]
          Length = 329

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 132/283 (46%), Gaps = 15/283 (5%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           L+  IL            + AK   S+I+ID    ++   K  D P   ASL+KMMT YI
Sbjct: 8   LITAILVFYFYFYVNGPSIKAK---SAILIDATSEEIVYKKNEDTPFSSASLSKMMTEYI 64

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           + E +Q  K+  + ++ +S ++     + + +  +   T      A++  S N  +    
Sbjct: 65  VLEQIQKGKIKWDDRVKISNSSIQMEGNNIDITFEDQITIRDLFHAMVLASDNSAAVFLA 124

Query: 149 EFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDKNQIT--TARDQAILGILLRKNF 205
           E IS SE+ F  LM+ KA ++G+ N T + NA+G+ +K + +  TA D + L   L  ++
Sbjct: 125 EHISKSEQDFTNLMNEKATQLGLSNKTYFANATGVINKQKESKITALDASKLAQHLITDY 184

Query: 206 PQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGYTRNSGFNIVTSLR 257
           P   +   +    F +++  + N NK+L       K   +DG++T ++  +G++  ++ +
Sbjct: 185 PMILEITQLTSYQFTFKDIHVFNTNKMLYSLDSKIKFKGVDGLQTSFSNPAGYSFASTAK 244

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
             +   +++VM          +  +L T   E   L   Q+ +
Sbjct: 245 QGNKRFISIVMEANGENSAFIETKKLFTYGSEPTHLPSLQSVK 287


>gi|307942276|ref|ZP_07657627.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Roseibium sp.
           TrichSKD4]
 gi|307774562|gb|EFO33772.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Roseibium sp.
           TrichSKD4]
          Length = 389

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 62/294 (21%), Positives = 132/294 (44%), Gaps = 8/294 (2%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-P 77
               +  R   L   +    +     ++E        + +++V    +   K  E  + P
Sbjct: 1   MSDFFKGRLASLCIALFGCCVAAPITSAETLDTAAPMAFLMEVKTGSVLYAKAAEKTFQP 60

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGI 132
           A L+++MT   +F+ L+  ++    +  VS+ A          + ++ +  +  +    +
Sbjct: 61  AGLSRIMTAATVFKALKDVEVTEAQECKVSEHAWRTGGAPAGGTTMFAELGSSISVLDLL 120

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             L+   A+D +    E + G EK FA  M+  A++IG+ N+ + + +G       TT  
Sbjct: 121 KGLLVHQAHDAAIILAECLDGDEKTFADRMTAYAREIGLTNSQFLSPAGFDVDGAATTVE 180

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           D A LG  + + FP  Y  F++ +F + +    N N L+ +M  +DG+ TG +   GF  
Sbjct: 181 DMATLGFHMLQEFPDRYPLFALNEFTWNDIYQRNRNPLIGEMRGLDGLGTGSSEKGGFAS 240

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSS 306
           + SL      ++AVV G P+++ R +   +++    +  +++  Q + K ++ +
Sbjct: 241 LASLNRDGRRVIAVVAGSPSAKARIKALKQVVDGAWDYFSVR--QLYSKGDVVA 292


>gi|331003847|ref|ZP_08327339.1| hypothetical protein HMPREF0491_02201 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412039|gb|EGG91436.1| hypothetical protein HMPREF0491_02201 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 455

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 146/317 (46%), Gaps = 33/317 (10%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSI----------VIDVNKNQMTGFKQ-DEP 74
           + +   G  + LSI MIS +SE +A   +++I          V + N  +    K  D  
Sbjct: 4   KKLVAGGLSILLSIGMISFSSE-YAMVTHAAIPPDIKSQGAAVYNANTGEFLYEKNGDRQ 62

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQG 131
            YPAS+TK+MT  I+ E       +LN  +  S+ A T      ++L + E    +    
Sbjct: 63  FYPASITKIMTTLIVLEQA-----NLNDTVVFSRAATTNLEAGATRLGVSEGDKMSVRDA 117

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +   +  SAN+VS    E++ GS   F+ +M+ +A++IG  NT + N SGL+++N +TTA
Sbjct: 118 LYGTMLASANEVSNGLAEYVGGSIAGFSSMMNARAREIGATNTNFVNPSGLNNQNHVTTA 177

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-------ITNHNKLLN---KMHNIDGIK 241
           +D A +     +N P +      + + +           I  H++++N       + G K
Sbjct: 178 KDMARIAAEAFRN-PDFRVIAGTKVYNFPAIKTKAEVTPIKMHHRMVNGSDNYPGVIGGK 236

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRK 301
           TGYTR++G  +VT        ++ VV+  P++   D +A  L+    E  T        K
Sbjct: 237 TGYTRSAGNTLVTCAERNGVRLIVVVLKSPSTHYADTRA--LLDYGFEVATTGGVNISSK 294

Query: 302 DNLSSTSLKKSLMIKKL 318
           D  +  ++ K+    K 
Sbjct: 295 DTGAKNAVVKAKQETKA 311


>gi|225378650|ref|ZP_03755871.1| hypothetical protein ROSEINA2194_04319 [Roseburia inulinivorans DSM
           16841]
 gi|225209487|gb|EEG91841.1| hypothetical protein ROSEINA2194_04319 [Roseburia inulinivorans DSM
           16841]
          Length = 461

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 62/274 (22%), Positives = 112/274 (40%), Gaps = 25/274 (9%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-QN 114
           I+++ +   +   K  DE  YPAS+TK+MT  +  E       +L+  +  S  A     
Sbjct: 46  ILMEESTGTILYEKNSDEAHYPASITKIMTTLLALE-----NGNLSDMVTFSDDAINNTE 100

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S +        T EQ +  ++  SAN+ + A  E + G+ + F  +M+ KAK++G  NT
Sbjct: 101 GSGIARDYGEQMTLEQCLYGVMLESANECAYAVAEHVGGTVENFVDMMNAKAKELGCTNT 160

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-------NRIITNH 227
            + N  GL D+N  TTA D A++     +N   +      + +            ++ NH
Sbjct: 161 HFANPHGLQDENHYTTAHDMALIAQAAYQN-ETFRIIIGTKMYTIPPTNKHAEETVLRNH 219

Query: 228 NKLL---------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           + +L                G KTGYT  +   +VT        ++ VVM   +  +   
Sbjct: 220 HDMLCTYHNANRKYLYPYCVGGKTGYTATANSTLVTYAEKDGMTLICVVMDTQSPNQ-FI 278

Query: 279 KALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
             + L     +   + +   +  D  + T++   
Sbjct: 279 DTVNLFDYAFDNFQVLNVAENDTDYSAETTVDNG 312


>gi|291539057|emb|CBL12168.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis XB6B4]
          Length = 423

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 61/255 (23%), Positives = 119/255 (46%), Gaps = 22/255 (8%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             +++++D +   +   K   +    AS TK++T  I  E        L++++ VS  AA
Sbjct: 57  AKAAVLMDADSGSILYEKNGHQAMANASTTKILTCIIALENCD-----LDSEVTVSTLAA 111

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +Q    L ++E   F  +  +  L+  S ND + A  E I+G+   FA LM++KA++IG 
Sbjct: 112 SQPKVHLGMREGQKFYLKDLLYGLMLESYNDCAVAIAEHIAGTTGDFAKLMNDKAEEIGC 171

Query: 172 QNTIYKNASGLHDKN----QITTARDQAILGILLRKNFPQYYKYFSIR---KFRY----- 219
           +++ +   +GL  KN      TTA D +++     K      ++ +I    ++++     
Sbjct: 172 EDSYFITPNGLDAKNENGFHHTTAADLSLIMRYCIKTSEMAEQFLTITREGQYQFSDIDG 231

Query: 220 -RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM--GMPTSQE- 275
             +    NHN  L  M      KTG+T N+G+  V +L+  D   +  ++  G P ++  
Sbjct: 232 KNSYTCCNHNAFLQMMDGALSGKTGFTGNAGYCYVGALKRDDRTFIVALLACGWPNNKTY 291

Query: 276 RDQKALELITSFLEK 290
           +     +L+   + +
Sbjct: 292 KWADTKKLMQYGISR 306


>gi|291086840|ref|ZP_06344603.2| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
 gi|291077111|gb|EFE14475.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
          Length = 516

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 67/308 (21%), Positives = 123/308 (39%), Gaps = 36/308 (11%)

Query: 47  ELHAKP-------KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKL 98
              AKP         S++++D    ++   K  +  R  AS TK+MT  +  E       
Sbjct: 141 PAQAKPEEDFKLYAQSAVLMDAGTGRILYEKDGKTKRPMASTTKIMTCILALEEG----- 195

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
                + VS  AA+    +L ++E   +  +  + +L+  S ND + A  E I+GS ++F
Sbjct: 196 SPEDLVTVSSYAASMPDVQLNIREGEQYYLKDLLYSLMLESHNDTAVAVAEHIAGSVEEF 255

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKN------QITTARDQAILGILLRKNFP---QYY 209
           A+LM+ KA+ IG  +T +   +GL   +        TTA D A +        P   ++ 
Sbjct: 256 AVLMNQKARDIGCTDTWFVTPNGLDGADGPQQTPHSTTAEDLARIMSYCITQSPKREEFI 315

Query: 210 KYFSIRKFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           +        +      R+    NHN  L  M      KTG+T  +G+  V +++ +    
Sbjct: 316 ELTRTASHSFADREGKRSFYCANHNAFLTMMPEALTGKTGFTGAAGYCYVGAVQDEGRTF 375

Query: 264 VAVVMGM---PTSQERDQKALELITSFLE----KKTLKHQQTHRKDNLSS-TSLKKSLMI 315
           V  ++G    P    +      L +  L     ++  +  +T     +    + K  L++
Sbjct: 376 VVSLLGCGWPPHKTYKWSDMKTLSSYALREYGWREVFESGKTFPDAAVKDGVAEKTGLVL 435

Query: 316 KKLKRTYS 323
              K   +
Sbjct: 436 AVPKEEQT 443


>gi|317057431|ref|YP_004105898.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus
           albus 7]
 gi|315449700|gb|ADU23264.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus
           albus 7]
          Length = 382

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 71/286 (24%), Positives = 129/286 (45%), Gaps = 23/286 (8%)

Query: 28  IQLMGKILFLSIIMISMASELHAKP-------KYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           ++       L ++MI   + ++AK          ++IV + +  ++   K  DEP   AS
Sbjct: 6   LRFCAGAAVLVLLMIFTLNTINAKAESKLQISAKAAIVYNGSTGEVLFEKNADEPLPMAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
            TK+M+  I+ E     +  L+ +  V   A     S + L+E    +       ++  S
Sbjct: 66  TTKIMSALIVLE-----QEDLDERFTVDSEAVNTEGSSMGLREGDEVSLRDLACGMLLPS 120

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD--KNQITTARDQAIL 197
            ND + A    ++GS + F  +M+ +A+K+G+++T +   SGL D   +  +TARD A+L
Sbjct: 121 GNDAANAAAVRVAGSIENFVGMMNERAEKLGLESTHFVTPSGLDDYTDDHYSTARDMAVL 180

Query: 198 GILLRKN--FPQYYKYFSIRKFRYR----NRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
                +N  F        ++   +      R + N NKLL K H I GIKTG+T  +   
Sbjct: 181 AAEAMENQDFRDICGLQRVK-LEFGCPPYERWLINTNKLL-KNHGITGIKTGFTDKARRC 238

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQ 297
           +V+S   +   ++ V +  P   +      +   S +E+  L  +Q
Sbjct: 239 LVSSCMREGCELICVTLNDPDDWKDHMALFDYGFSHVEQVKLSPKQ 284


>gi|240144614|ref|ZP_04743215.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis
           L1-82]
 gi|257203330|gb|EEV01615.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis
           L1-82]
          Length = 468

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 64/255 (25%), Positives = 104/255 (40%), Gaps = 23/255 (9%)

Query: 57  IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-QN 114
           IV++ +   +       E  YPAS+TK+MT  I  E        LN  +  S  A     
Sbjct: 50  IVMEASTGTVLYDCDSLEAHYPASITKIMTTLIALENSD-----LNDIVTFSDAAIDNTE 104

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S +        T EQ + A++  SAN+ + A  E + G+ + F  +M+ KAK++G QNT
Sbjct: 105 GSGIARDYGEQMTMEQCLYAVMLASANECAYAVAEHVGGTIENFVAMMNEKAKELGCQNT 164

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-------ITNH 227
            + N  GLHD+N  T   D A++     +N   +       ++             + NH
Sbjct: 165 HFANPHGLHDENHYTCCYDMALIARAAYQN-ETFRIIVGTARYTIPPTNKHAEQTDLQNH 223

Query: 228 NKLLNK-------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           N++L              G KTGYT  +   +VT        ++ VVM   +  +    +
Sbjct: 224 NEMLYPFQTNKYVYDGCTGGKTGYTNAANSTLVTYAERDGMTLICVVMNTQSPNQ-WLDS 282

Query: 281 LELITSFLEKKTLKH 295
             L     +   L +
Sbjct: 283 RNLFDYCFDNFQLFN 297


>gi|88607085|ref|YP_505745.1| D-alanyl-D-alanine carboxypeptidase family protein [Anaplasma
           phagocytophilum HZ]
 gi|88598148|gb|ABD43618.1| D-alanyl-D-alanine carboxypeptidase family protein [Anaplasma
           phagocytophilum HZ]
          Length = 386

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 80/274 (29%), Positives = 135/274 (49%), Gaps = 12/274 (4%)

Query: 31  MGKILFLSIIMISMASELHAKPKYS--------SIVIDVNKNQMTGFKQ-DEPRYPASLT 81
           +G +LF + I  ++   L A P  S        +IV +     +      D P   AS++
Sbjct: 5   LGLLLFKAFIC-ALIFVLPAHPDASGLRTKAPHAIVFEWGSKTILFEHDVDAPTPTASMS 63

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MTLYI+ + L++  + L   + VS+ AA+      +LK     +    I      S N
Sbjct: 64  KLMTLYIVLKNLKAGNIKLEDNLRVSEGAASAGAPTAFLKTGQLISVNDLIKGAAVASGN 123

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D      E +  S++KF   M+  AK++ ++N+ + N +G  D + + + RD  IL   +
Sbjct: 124 DACITLAEGLYTSQEKFVEEMNRVAKELDLKNSRFVNVTGWPD-DNMMSVRDLLILSARI 182

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKD 260
            ++FP+YY +F  ++F Y      N+N LLN  +  +DGIKTG+TR  G+ +V S     
Sbjct: 183 LQDFPEYYYFFGEKQFTYNGITQKNYNALLNYNNIEVDGIKTGHTRTGGYGMVASALKDG 242

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
             ++ V+ G+ T  ER  +A +LI   L   + K
Sbjct: 243 RRVLVVINGLSTETERAYEAKKLILYALNHFSTK 276


>gi|47569141|ref|ZP_00239829.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus
           G9241]
 gi|47554212|gb|EAL12575.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus
           G9241]
          Length = 374

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 129/294 (43%), Gaps = 19/294 (6%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +  +   ++ + +        S+   ++++    ++   K + EP+  AS+T
Sbjct: 2   RRICVIITLFIVYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASIT 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +   + VS  A     S +YLK       E  +  L+ RS N
Sbjct: 62  KIMTALLAAESGK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDIVYGLMLRSGN 116

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L   
Sbjct: 117 DAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTRY 176

Query: 201 LRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              N   + K F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+  
Sbjct: 177 AMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 235

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
                ++ V +   +  +     + L     E+   K      +  L+  + KK
Sbjct: 236 KDGLDLIVVTLSASSDWD---DHMNLFDKGFER--FKQTNVVGRGALAEITEKK 284


>gi|326939188|gb|AEA15084.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 374

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 130/294 (44%), Gaps = 19/294 (6%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +L +   ++ + +        S+   ++++    ++   K + EP+  AS+T
Sbjct: 2   RRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASIT 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +   + VS  A     S +YLK       E  +  L+ RS N
Sbjct: 62  KIMTALLAAESGK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGN 116

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS   F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L   
Sbjct: 117 DAAQVIAESVGGSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKY 176

Query: 201 LRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              N   + K F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+  
Sbjct: 177 AMGN-ESFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 235

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
                ++ V +   +  +     + L     E+   K  +   +  ++  + KK
Sbjct: 236 KDGLDLIVVTLSASSDWD---DHMNLFDKGFER--FKQTKVLGQGAIAEINEKK 284


>gi|182625716|ref|ZP_02953485.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens D str. JGS1721]
 gi|177909118|gb|EDT71593.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens D str. JGS1721]
          Length = 291

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 63/238 (26%), Positives = 119/238 (50%), Gaps = 11/238 (4%)

Query: 56  SIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +I  D    ++   K        AS TK++T  +   Y       L+ ++ +SKTAA+  
Sbjct: 59  AIAYDAKNKKILYEKNAFRNVPMASTTKILTALVAINYSD-----LDEEVTISKTAASIR 113

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            SK+  +     T  + +  L+ +S ND + A  E I GS + F+ILM++ A+ +G++++
Sbjct: 114 GSKVGFRAGEKVTMRELLFGLMYKSGNDAAIAIAEHIGGSIENFSILMNDFARMLGLKDS 173

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF---RYR-NRIITNHNKL 230
            +++  GL  +   ++A D A+L     +  P + +     +    +Y   R  +N NK+
Sbjct: 174 NFQSPHGLDSQMHFSSAYDLAVLMSKAMEE-PFFREISGTNEVGAEKYNFTRSYSNINKM 232

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           L ++ N +G KTGYT  +G  +V+S+ +    I+ VV+  PT  E  ++  E + +  
Sbjct: 233 LWRLPNANGGKTGYTGQAGKCLVSSVDHNGRNIIIVVLNCPTRWEATERVYEYVKANY 290


>gi|167767426|ref|ZP_02439479.1| hypothetical protein CLOSS21_01945 [Clostridium sp. SS2/1]
 gi|167711401|gb|EDS21980.1| hypothetical protein CLOSS21_01945 [Clostridium sp. SS2/1]
 gi|291559258|emb|CBL38058.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
           SSC/2]
          Length = 383

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 68/312 (21%), Positives = 140/312 (44%), Gaps = 23/312 (7%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTK 82
           ++  + +   ++  SI + ++++E       +++++D    ++   K +D+    AS TK
Sbjct: 1   MKTIVSVFLYVIICSIQIYAVSAEEINLNAKAAVIMDAESGKILYEKSKDQKMPNASTTK 60

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           ++T   I ++       L+    VSK AA Q   +L ++E   +  +  +  L+  S ND
Sbjct: 61  ILTCLYILKHCD-----LDQMAEVSKNAAMQPKVRLGVREGEKYKVKDLLYGLMLESYND 115

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN----QITTARDQAILG 198
            +    E   GS + F   M+  A+ +G  NT +   +GL   +      TTA+D A + 
Sbjct: 116 CAVVLAEHAEGSVENFEKRMNQMAENLGTLNTHFVTPNGLDGIDKKGRHETTAQDLAKIM 175

Query: 199 ILLRKNFPQYYKYFSIRKFRYRN------RIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
               KN  Q+ +    +++ + +       I  NHN LL+ M  +   KTGYT  +G+  
Sbjct: 176 ARCIKN-QQFLEITQTKQYTFTDGSRKRRFICNNHNALLSSMQGVISGKTGYTSKAGYCY 234

Query: 253 VTSLRYKDDPIVAVVMGM---PTSQERDQKALELI---TSFLEKKTLKHQQTHRKDNLSS 306
           V +++ K+  +   V+     P    + +   +L+   T   E++ +    +  K+    
Sbjct: 235 VGAVKQKNMTMTFSVLASGWPPHKTYKWKDVRKLVQYATDHYERREIIADTSKIKEISIK 294

Query: 307 TSLKKSLMIKKL 318
             LK+ +++K  
Sbjct: 295 NGLKEKVLLKTG 306


>gi|118477025|ref|YP_894176.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
           Hakam]
 gi|118416250|gb|ABK84669.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
           Hakam]
          Length = 386

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 141/326 (43%), Gaps = 27/326 (8%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +L +   ++ + +        S+   ++++ +  ++   K + EP+  AS+T
Sbjct: 14  RRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASIT 73

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +  ++ VS  A     S +YLK       E  +  L+ RS N
Sbjct: 74  KIMTALLAAESGK-----MKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGN 128

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L   
Sbjct: 129 DAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTRY 188

Query: 201 LRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              N   + K F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+  
Sbjct: 189 AMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 247

Query: 258 YKDDPIVAVVMGMPTSQ-----------ERDQKALELITSFLEKKTLKHQQ--THRKDNL 304
                ++ V +   +             +R ++   L    L + T K      + K++ 
Sbjct: 248 KDGLDLIVVTLSASSDWDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYTKNSF 307

Query: 305 SSTSLKKSLMIKKLKRTYSQFKKIDA 330
           S    ++      LK    +  K+  
Sbjct: 308 SVPLTEEEKKSVVLKVELDKSAKLVD 333


>gi|228907200|ref|ZP_04071061.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           200]
 gi|228852421|gb|EEM97214.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           200]
          Length = 378

 Score =  218 bits (557), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 130/294 (44%), Gaps = 19/294 (6%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +L +   ++ + +        S+   ++++    ++   K + EP+  AS+T
Sbjct: 6   RRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASIT 65

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +   + VS  A     S +YLK       E  +  L+ RS N
Sbjct: 66  KIMTALLAAESGK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGN 120

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS   F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L   
Sbjct: 121 DAAQVIAESVGGSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKY 180

Query: 201 LRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              N   + K F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+  
Sbjct: 181 AMGN-ESFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 239

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
                ++ V +   +  +     + L     E+   K  +   +  ++  + KK
Sbjct: 240 KDGLDLIVVTLSASSDWD---DHMNLFDKGFER--FKQTKVLGQGAIAEINEKK 288


>gi|228938680|ref|ZP_04101285.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228971562|ref|ZP_04132186.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978173|ref|ZP_04138551.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
 gi|228781645|gb|EEM29845.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
 gi|228788221|gb|EEM36176.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821056|gb|EEM67076.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 378

 Score =  218 bits (557), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 130/294 (44%), Gaps = 19/294 (6%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +L +   ++ + +        S+   ++++    ++   K + EP+  AS+T
Sbjct: 6   RRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASIT 65

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +   + VS  A     S +YLK       E  +  L+ RS N
Sbjct: 66  KIMTALLAAESGK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGN 120

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS   F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L   
Sbjct: 121 DAAQVIAESVGGSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKY 180

Query: 201 LRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              N   + K F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+  
Sbjct: 181 AMGN-ESFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 239

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
                ++ V +   +  +     + L     E+   K  +   +  ++  + KK
Sbjct: 240 KDGLDLIVVTLSASSDWD---DHMNLFDKGFER--FKQTKVLGQGAIAEINEKK 288


>gi|218896498|ref|YP_002444909.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           G9842]
 gi|218543820|gb|ACK96214.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           G9842]
          Length = 374

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 130/294 (44%), Gaps = 19/294 (6%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +L +   ++ + +        S+   ++++    ++   K + EP+  AS+T
Sbjct: 2   RRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASIT 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +   + VS  A     S +YLK       E  +  L+ RS N
Sbjct: 62  KIMTALLAAESGK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGN 116

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS   F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L   
Sbjct: 117 DAAQVIAESVGGSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKY 176

Query: 201 LRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              N   + K F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+  
Sbjct: 177 AMGN-ESFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 235

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
                ++ V +   +  +     + L     E+   K  +   +  ++  + KK
Sbjct: 236 KDGLDLIVVTLSASSDWD---DHMNLFDKGFER--FKQTKVLGQGAIAEINEKK 284


>gi|118443151|ref|YP_878109.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT]
 gi|118133607|gb|ABK60651.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT]
          Length = 375

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 84/323 (26%), Positives = 148/323 (45%), Gaps = 25/323 (7%)

Query: 26  RNIQLMGKILFLSIIM-ISMASELHAK---------PKYSSIVIDVNKNQMTGFKQDEPR 75
           + ++ +  IL + +I  I+    + A              +I +D     +   K  E  
Sbjct: 2   KKLRTISIILNICLIFNIAFVPSIEATEPKNNSIYVDARCAIAMDSKSKCVLYEKNAEML 61

Query: 76  YP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
            P AS TK+MT  +  +Y      +L+T+  VS  AA+   SK+  K+    + ++ +  
Sbjct: 62  VPIASTTKIMTTLVALKYG-----NLDTKYEVSPKAASIRGSKVGYKKGEQISLKELLYG 116

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           L+ RS ND +    E ISGS +KF  LM+  A +IG  N+ +++  GL  +N  +TA D 
Sbjct: 117 LMLRSGNDAAITIAEGISGSVEKFCELMNEYAIEIGAFNSHFESPHGLDSQNHYSTAYDL 176

Query: 195 AILGILLRKN--FPQYYKYFSIRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           A +    ++N  F +      I + ++   R   N NK+L ++ N +G+KTGYT  +G  
Sbjct: 177 ARITAKAKENKLFNEIVGVKDIDEKQHGFTRSYHNINKILYQIPNANGVKTGYTGGAGKC 236

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQ------THRKDNLS 305
           +VTS++  DD ++ VV+      +  +K  + +    + K L  +          K N  
Sbjct: 237 LVTSVKEDDDDVIIVVLNCTPRWKETKKIYDFVKENYDFKKLVSKDQVLDNIEDNKGNKV 296

Query: 306 STSLKKSLMIKKLKRTYSQFKKI 328
                  L+I   K+   ++K I
Sbjct: 297 KLVCNNDLVIPVGKQEKCEYKII 319


>gi|254469200|ref|ZP_05082605.1| D-alanyl-D-alanine carboxypeptidase, putative [Pseudovibrio sp.
           JE062]
 gi|211961035|gb|EEA96230.1| D-alanyl-D-alanine carboxypeptidase, putative [Pseudovibrio sp.
           JE062]
          Length = 372

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 132/309 (42%), Gaps = 16/309 (5%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEY 92
           + F SI+  S A  +  K K ++ + D     +   K  +    PA+LTK+MT   + + 
Sbjct: 1   MAFCSILAASPAQAVEIKAK-AATLYDFTNKSLVFSKNSQVLMAPANLTKLMTAVTVQQA 59

Query: 93  LQSKKLHLNTQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + +  +   T   VS+ A          + ++ +  +  +    +  LI  SAND +   
Sbjct: 60  IHAGDITPQTMFKVSEHAWRTGGAPARVTTMFARLNSSVSVNDLMYGLIVHSANDAAIIL 119

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E ++GSE+ FA  M+  AK IGM+N+ + N +G  D+N  TT  D  +L   + ++ P+
Sbjct: 120 AEGLAGSEENFAQEMNKLAKSIGMENSNFTNPTGFPDENHKTTLEDLTVLAAYVLEHEPE 179

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            +  +++ +F +      N N L+  +  +DG   G++   GF  + +L       VA +
Sbjct: 180 LHSVYAMDRFTWNKITQRNKNPLIRDIQGLDGFGAGFSEREGFAALGTLDSNGHRYVAAI 239

Query: 268 MGMPTSQERDQKALEL---------ITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKL 318
              PT Q+R Q    L         +     K  L           ++ SLK +  +  L
Sbjct: 240 AASPTLQDRVQDMKTLLLPTFSGLKLQQLFRKGELISDAQVYGGKKTTVSLKTNDAVATL 299

Query: 319 KRTYSQFKK 327
                + K 
Sbjct: 300 INPNEKDKY 308


>gi|206967983|ref|ZP_03228939.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH1134]
 gi|206736903|gb|EDZ54050.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH1134]
          Length = 374

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 130/294 (44%), Gaps = 19/294 (6%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +L +   ++ + +        S+   ++++    ++   K + EP+  AS+T
Sbjct: 2   RRICVIITLLMMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASIT 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +   + VS  A     S +YLK       E  +  L+ RS N
Sbjct: 62  KIMTALLAAESGK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGN 116

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS   F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L   
Sbjct: 117 DAAQVIAESVGGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKY 176

Query: 201 LRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              N   + K F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+  
Sbjct: 177 AMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 235

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
                ++ V +   +  +     + L     E+   K  +   +  ++  + KK
Sbjct: 236 KDGLDLIVVTLSASSDWD---DHMNLFDKGFER--FKQTKVLGQGAIAEINEKK 284


>gi|225575599|ref|ZP_03784209.1| hypothetical protein RUMHYD_03691 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037193|gb|EEG47439.1| hypothetical protein RUMHYD_03691 [Blautia hydrogenotrophica DSM
           10507]
          Length = 423

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 67/265 (25%), Positives = 114/265 (43%), Gaps = 24/265 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++++D N   +   K      YPAS+TK+MT  +  +     + + +  +  S  A 
Sbjct: 75  AGSAVLMDANTGAILYSKNAHKKLYPASITKIMTTALAMQ-----RCNPDDTVTFSDYAI 129

Query: 112 T---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
           T    + S +               A++  SAN+V+TA  E   G+ K F  LM+  A++
Sbjct: 130 THQDVDSSNIGCLVGEQMKVSDCYRAIMLASANEVATAIAEQSCGNLKNFVELMNQTARQ 189

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-------RN 221
           IG   T + NA+GL DK+  TTA D A++     KN  Q+ K  +  ++           
Sbjct: 190 IGCTRTHFNNANGLPDKHHYTTAHDMALIARYAWKN-TQFRKVATTLEYTIEPTNLYTEP 248

Query: 222 RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           R++ NH+K+++          G KTGYT+ +G  +VT  +     ++ VV+         
Sbjct: 249 RVLYNHHKMMSNTGYYYEGCLGGKTGYTQAAGNTLVTYAKRGHMTLICVVL-QDEGTYTY 307

Query: 278 QKALELITSFLEKKTLKHQQTHRKD 302
                L          K+ Q  +K 
Sbjct: 308 TDTAALFDYGFNN--FKNIQVEKKG 330


>gi|196039076|ref|ZP_03106383.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           NVH0597-99]
 gi|196030221|gb|EDX68821.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           NVH0597-99]
          Length = 374

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 141/326 (43%), Gaps = 27/326 (8%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +L +   ++ + +        S+   ++++ +  ++   K + EP+  AS+T
Sbjct: 2   RRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASIT 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +  ++ VS  A     S +YLK       E  +  L+ RS N
Sbjct: 62  KIMTALLAAESGK-----MKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGN 116

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L   
Sbjct: 117 DAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTRY 176

Query: 201 LRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              N   + K F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+  
Sbjct: 177 AMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 235

Query: 258 YKDDPIVAVVMGMPTSQ-----------ERDQKALELITSFLEKKTLKHQQ--THRKDNL 304
                ++ V +   +             +R ++   L    L + T K      + K++ 
Sbjct: 236 KDGLDLIVVTLSASSDWDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYTKNSF 295

Query: 305 SSTSLKKSLMIKKLKRTYSQFKKIDA 330
           S    ++      LK    +  K+  
Sbjct: 296 SVPLTEEEKKSVVLKVELDKSAKLVD 321


>gi|306832771|ref|ZP_07465907.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus bovis ATCC
           700338]
 gi|304425120|gb|EFM28250.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus bovis ATCC
           700338]
          Length = 416

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 145/345 (42%), Gaps = 33/345 (9%)

Query: 22  IYIQRNIQLMGKIL-FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PAS 79
           + +++        L FL++     A +        +I ++    ++   K        AS
Sbjct: 3   LLMKKIFAFFAIFLTFLAVGSKVSADDDFDVSAEHAIAVEATTGKVLYEKDATTPDGIAS 62

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILAL 135
           +TK++T+Y++++ +   K+  +T++ +S  A    A  + S + ++ + Y T EQ + A 
Sbjct: 63  MTKILTVYLVYKAIDEGKISWDTKVSISDYAYNLTANSDASNVPMEAREY-TVEQLVNAA 121

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD----------- 184
           +  SAN  + A  E I G+E KF  +M  + +  G+ +    NASGL++           
Sbjct: 122 MVASANSAAIALAEQIGGTESKFVDMMKAQLEVWGITDATIVNASGLNNSYLGDNIYPGS 181

Query: 185 ---KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NI 237
                 + +ARD AI+   L   +P   K  S     +    +  +N +L  M      +
Sbjct: 182 SSTDENMMSARDVAIIAQHLITEYPDILKITSQTTADFDGTTMNTYNYMLEGMPYERSGV 241

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE----RDQKALELIT---SFLEK 290
           DG+KTG T  +G + V +       I++VVM     ++    R +   +L+    S  E 
Sbjct: 242 DGLKTGTTELAGASFVATSTENGMRIISVVMNADGWEDDEYARFEATNDLLDYVKSNYEM 301

Query: 291 KTL-KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
            TL K  ++++    +    K   +           ++I+    +
Sbjct: 302 VTLVKAGKSYQSSKATVNDGKAKSVAAVASEDLKVVRRINTDVSA 346


>gi|229155136|ref|ZP_04283248.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
 gi|228628263|gb|EEK84978.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
          Length = 378

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 129/294 (43%), Gaps = 19/294 (6%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +  +   ++ + +        S+   ++++    ++   K + EP+  AS+T
Sbjct: 6   RRICVIITLFIVYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASIT 65

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +   + VS  A     S +YLK       E  +  L+ RS N
Sbjct: 66  KIMTALLAAESGK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDIVYGLMLRSGN 120

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L   
Sbjct: 121 DAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTRY 180

Query: 201 LRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              N   + K F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+  
Sbjct: 181 AMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 239

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
                ++ V +   +  +     + L     E+   K      +  L+  + KK
Sbjct: 240 KDGLDLIVVTLSASSDWD---DHMNLFDKGFER--FKQTNVVGQGALAEITEKK 288


>gi|227815684|ref|YP_002815693.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. CDC 684]
 gi|254682367|ref|ZP_05146228.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254721249|ref|ZP_05183039.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A1055]
 gi|254733782|ref|ZP_05191496.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254740527|ref|ZP_05198218.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Kruger B]
 gi|254753916|ref|ZP_05205951.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Vollum]
 gi|254759012|ref|ZP_05211039.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Australia 94]
 gi|227004936|gb|ACP14679.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
           CDC 684]
          Length = 374

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 72/326 (22%), Positives = 141/326 (43%), Gaps = 27/326 (8%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +L +   ++ + +        S+   ++++ +  ++   K + EP+  AS+T
Sbjct: 2   RRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASIT 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +  ++ VS  A     S +YLK       E  +  L+ RS N
Sbjct: 62  KIMTALLAAESGK-----MKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGN 116

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L   
Sbjct: 117 DAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTRY 176

Query: 201 LRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              N   + + F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+  
Sbjct: 177 AMGN-ETFKEIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 235

Query: 258 YKDDPIVAVVMGMPTSQ-----------ERDQKALELITSFLEKKTLKHQQ--THRKDNL 304
                ++ V +   +             +R ++   L    L + T K      + K++ 
Sbjct: 236 KDGLDLIVVTLSASSDWDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYTKNSF 295

Query: 305 SSTSLKKSLMIKKLKRTYSQFKKIDA 330
           S    ++      LK    +  K+  
Sbjct: 296 SVPLTEEEKKSVVLKVELDKSAKLVD 321


>gi|152977572|ref|YP_001377089.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152026324|gb|ABS24094.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH
           391-98]
          Length = 425

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 66/307 (21%), Positives = 133/307 (43%), Gaps = 28/307 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++I+ D +  ++   +  DE    AS++K+M +Y + E +++ K+  NT++ +S  A 
Sbjct: 33  AAAAILFDADTGKVLHEQNPDELLAVASMSKLMVVYAVLEAIKAGKITWNTKVNISDYAY 92

Query: 112 ----TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                   S +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L    AK
Sbjct: 93  EVSRNNEFSNVPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLKLADEYAK 152

Query: 168 KIGMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFS 213
           K+G++   + NA+GL++ +                 +ARD  IL   L   +P+  +   
Sbjct: 153 KLGLKKYKFVNATGLNNADLKGKHPEGTDPNGENSLSARDMGILAKTLITKYPEMLEDTK 212

Query: 214 IRKFRYRN-----RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
            R   + +       + N N +L          DG+KTG +  +G+    + +  D  ++
Sbjct: 213 QRFRNFPDNHPKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDLRLI 272

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
           +V++   +  ER  ++ ELI         K     + + +S    K+  +    ++    
Sbjct: 273 SVIIKTKSMDERFTESRELIDYGFRNFEKKKLTLDKNNTISVVKGKEDAVSIAPEKEIEV 332

Query: 325 FKKIDAK 331
             K  +K
Sbjct: 333 VTKKGSK 339


>gi|291458267|ref|ZP_06597657.1| serine-type D-Ala-D-Ala carboxypeptidase [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291418800|gb|EFE92519.1| serine-type D-Ala-D-Ala carboxypeptidase [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 528

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 60/278 (21%), Positives = 124/278 (44%), Gaps = 32/278 (11%)

Query: 40  IMISMASELHAKPK----YSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
           I  +      + P       +I+ID + N +   K +   Y PAS+TK++T  ++ E+++
Sbjct: 30  IAFAAGGSWPSPPADIQSNGAILIDSDSNAVLYAKNEHEHYFPASITKVLTAVVVLEHVK 89

Query: 95  SKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           +    L+ ++  S +A +     N + +        +    + +L+  SAND + A  E 
Sbjct: 90  N----LDEKLTFSSSATSGNLEANSTVIGAVPGDKLSVRDCLYSLLLHSANDCANALAEH 145

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           ++GS + FA LM+ KA ++G  ++ + N SGL +    T+  D A +     KN P + +
Sbjct: 146 VAGSNEAFAELMNQKAAELGCTDSHFMNPSGLDNPEHYTSCADMAKILQYAIKN-PTFRQ 204

Query: 211 YFSIRKFRY-----------RNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVT 254
             S + + +           +   I  H+ ++ +      + +   KTGYT  +G  +VT
Sbjct: 205 IDSTQVYTHAPISKYPDIGAKENTIYAHHHMMRRAYRDFYNGVFAGKTGYTMTAGNTLVT 264

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           + +  +  ++ V++    SQ       +L     +  +
Sbjct: 265 ACKRNNMTLICVILNGHHSQ--YSDTRKLFDFAYDNFS 300


>gi|317496761|ref|ZP_07955091.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895773|gb|EFV17925.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 383

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 69/312 (22%), Positives = 141/312 (45%), Gaps = 23/312 (7%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTK 82
           ++  + +   ++  SI + ++++E       +++++D    ++   K +D+    AS TK
Sbjct: 1   MKTIVSVFLYVIICSIQIYAVSAEEINLNAKAAVIMDAESGKILYEKSKDQKMPNASTTK 60

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           ++T   I ++       L+    VSK AA Q   +L ++E   +  +  +  L+  S ND
Sbjct: 61  ILTCLYILKHCD-----LDQMAEVSKNAAMQPKVRLGVREGEKYKVKDLLYGLMLESYND 115

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN----QITTARDQAILG 198
            +    E   GS +KF   M+  A+ +G  NT +   +GL   +      TTA+D A + 
Sbjct: 116 CAVVLAEHAEGSVEKFEKRMNQMAENLGTLNTHFVTPNGLDGIDKKGRHETTAQDLAKIM 175

Query: 199 ILLRKNFPQYYKYFSIRKFRYRN------RIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
               KN  Q+ +    +++ + +       I  NHN LL+ M  +   KTGYT  +G+  
Sbjct: 176 ARCIKN-QQFLEITQTKQYTFTDGSRKRRFICNNHNALLSSMQGVISGKTGYTSKAGYCY 234

Query: 253 VTSLRYKDDPIVAVVMGM---PTSQERDQKALELI---TSFLEKKTLKHQQTHRKDNLSS 306
           V +++ K+  +   V+     P    + +   +L+   T   E++ +    +  K+    
Sbjct: 235 VGAVKQKNMTMTFSVLASGWPPHKTYKWKDVRKLVQYATDHYERREIIADTSKIKEISIK 294

Query: 307 TSLKKSLMIKKL 318
             LK+ +++K  
Sbjct: 295 NGLKEKVLLKTG 306


>gi|196036818|ref|ZP_03104207.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           W]
 gi|196047629|ref|ZP_03114836.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           03BB108]
 gi|218902679|ref|YP_002450513.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH820]
 gi|225863432|ref|YP_002748810.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           03BB102]
 gi|301053108|ref|YP_003791319.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis CI]
 gi|195990547|gb|EDX54526.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           W]
 gi|196021543|gb|EDX60243.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           03BB108]
 gi|218536387|gb|ACK88785.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH820]
 gi|225788779|gb|ACO28996.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 03BB102]
 gi|300375277|gb|ADK04181.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 374

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 141/326 (43%), Gaps = 27/326 (8%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +L +   ++ + +        S+   ++++ +  ++   K + EP+  AS+T
Sbjct: 2   RRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASIT 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +  ++ VS  A     S +YLK       E  +  L+ RS N
Sbjct: 62  KIMTALLAAESGK-----MKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGN 116

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L   
Sbjct: 117 DAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTRY 176

Query: 201 LRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              N   + K F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+  
Sbjct: 177 AMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 235

Query: 258 YKDDPIVAVVMGMPTSQ-----------ERDQKALELITSFLEKKTLKHQQ--THRKDNL 304
                ++ V +   +             +R ++   L    L + T K      + K++ 
Sbjct: 236 KDGLDLIVVTLSASSDWDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYTKNSF 295

Query: 305 SSTSLKKSLMIKKLKRTYSQFKKIDA 330
           S    ++      LK    +  K+  
Sbjct: 296 SVPLTEEEKKSVVLKVELDKSAKLVD 321


>gi|266621645|ref|ZP_06114580.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
 gi|288866679|gb|EFC98977.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
          Length = 541

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 74/287 (25%), Positives = 123/287 (42%), Gaps = 32/287 (11%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKY---------SSIVIDVNKNQMTGFKQDEPRY-PA 78
           ++   +L L ++M +  +   A P +         S IVID +   +   +    +Y PA
Sbjct: 19  RMSAFLLCLMLLMGAFPATALAAPDWPSGVSVQAESGIVIDADTGTVLWGQNIHNQYFPA 78

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILAL 135
           S+TK+MT  I+ E        L+  +  S  A        S   + E    + +  + AL
Sbjct: 79  SITKIMTALIVIE-----TCSLDETVTFSHNAVFNVEAGSSNAGINEGDKLSVKDCLYAL 133

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + +SAN+ + A  E ++GS + FA +M+ KAK++G  +T + N SGL+D    T+  D A
Sbjct: 134 LLKSANEAANALAEHVAGSTEAFADMMNAKAKELGCTDTHFANPSGLNDPEHYTSTYDMA 193

Query: 196 ILGILLRKNFPQYYKYFSI-------RKFRYRNRIITNHNKLLNK-----MHNIDGIKTG 243
           ++      N P + +  S                 I   +K+L K        I G KTG
Sbjct: 194 LIARAAFLN-PTFEEIDSTAYYKLPPNSINPEGLTIYPGHKMLKKSTPYYYPGIVGGKTG 252

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           YT  +G  +VT  R     ++AV++   T Q        L+    E 
Sbjct: 253 YTTLAGNTLVTCARKNGLKLIAVILKGSTPQY-WTDTKNLLDFGFEN 298


>gi|228914143|ref|ZP_04077761.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228932855|ref|ZP_04095722.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228945169|ref|ZP_04107525.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228814404|gb|EEM60669.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228826776|gb|EEM72543.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228845476|gb|EEM90509.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 378

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 141/326 (43%), Gaps = 27/326 (8%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +L +   ++ + +        S+   ++++ +  ++   K + EP+  AS+T
Sbjct: 6   RRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASIT 65

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +  ++ VS  A     S +YLK       E  +  L+ RS N
Sbjct: 66  KIMTALLAAESGK-----MKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGN 120

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L   
Sbjct: 121 DAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTRY 180

Query: 201 LRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              N   + K F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+  
Sbjct: 181 AMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 239

Query: 258 YKDDPIVAVVMGMPTSQ-----------ERDQKALELITSFLEKKTLKHQQ--THRKDNL 304
                ++ V +   +             +R ++   L    L + T K      + K++ 
Sbjct: 240 KDGLDLIVVTLSASSDWDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYTKNSF 299

Query: 305 SSTSLKKSLMIKKLKRTYSQFKKIDA 330
           S    ++      LK    +  K+  
Sbjct: 300 SVPLTEEEKKSVVLKVELDKSAKLVD 325


>gi|49481056|ref|YP_035686.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49332612|gb|AAT63258.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 374

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 141/326 (43%), Gaps = 27/326 (8%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +L +   ++ + +        S+   ++++ +  ++   K + EP+  AS+T
Sbjct: 2   RRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASIT 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +  ++ VS  A     S +YLK       E  +  L+ RS N
Sbjct: 62  KIMTALLAAESGK-----MKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGN 116

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L   
Sbjct: 117 DAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTRY 176

Query: 201 LRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              N   + K F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+  
Sbjct: 177 AMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 235

Query: 258 YKDDPIVAVVMGMPTSQ-----------ERDQKALELITSFLEKKTLKHQQ--THRKDNL 304
                ++ V +   +             +R ++   L    L + T K      + K++ 
Sbjct: 236 KDGLDLIVVTLSASSDWDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYTKNSF 295

Query: 305 SSTSLKKSLMIKKLKRTYSQFKKIDA 330
           S    ++      LK    +  K+  
Sbjct: 296 SVPLTEEEKKSVVLKVELDKSAKLVD 321


>gi|228926600|ref|ZP_04089669.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228832976|gb|EEM78544.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 378

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 141/326 (43%), Gaps = 27/326 (8%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +L +   ++ + +        S+   ++++ +  ++   K + EP+  AS+T
Sbjct: 6   RRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASIT 65

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +  ++ VS  A     S +YLK       E  +  L+ RS N
Sbjct: 66  KIMTALLAAESGK-----MKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGN 120

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L   
Sbjct: 121 DAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTRY 180

Query: 201 LRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              N   + K F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+  
Sbjct: 181 AMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 239

Query: 258 YKDDPIVAVVMGMPTSQ-----------ERDQKALELITSFLEKKTLKHQQ--THRKDNL 304
                ++ V +   +             +R ++   L    L + T K      + K++ 
Sbjct: 240 KDGLDLIVVTLSASSDWDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYTKNSF 299

Query: 305 SSTSLKKSLMIKKLKRTYSQFKKIDA 330
           S    ++      LK    +  K+  
Sbjct: 300 SVPLTEEEKKSVVLKVELDKSAKLVD 325


>gi|227873312|ref|ZP_03991575.1| D-alanyl-D-alanine carboxypeptidase [Oribacterium sinus F0268]
 gi|227840841|gb|EEJ51208.1| D-alanyl-D-alanine carboxypeptidase [Oribacterium sinus F0268]
          Length = 525

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 137/308 (44%), Gaps = 35/308 (11%)

Query: 6   IQSSAKKTFLTYPYGSIYIQRNIQLMGKILF----LSIIMISMASELHAKPKYSSIVIDV 61
           I+ S K     Y   S+Y      ++   +F    L+    +   ++ A     ++++D 
Sbjct: 2   IKQSLKNKLSRYSRNSLYFVLLFSMLFSFVFSQQALADTWPTCVDQIEAD---GALLMDA 58

Query: 62  NKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
             + +   K +   Y PAS+TK++T  ++ E++++    L  ++  S+ A       N +
Sbjct: 59  KSSTILYAKNENTHYFPASITKVLTAIVVLEHVEN----LEEKVTFSQEATRGNLENNST 114

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
            +        +    + +L+  SAND + A  E ++GS +KFA LM+ KA +IG  N+ +
Sbjct: 115 VIAASPGDKLSVRDCLYSLLLHSANDCANALAEHVAGSNEKFAELMNQKAAEIGCTNSHF 174

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----------NRIIT 225
            N SGL++    T+A D A +      N P + +  + + + +               I 
Sbjct: 175 TNPSGLNNPEHYTSALDMAKIMQYAISN-PTFCQIDATQVYTHGPLIKYPDPNAPENTIY 233

Query: 226 NHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
            H+K++ K        +   KTGYT  +G  +VT+ +  D  ++ V++    SQ RD K 
Sbjct: 234 AHHKMMKKSNKEYYSGVFAGKTGYTLLAGNTLVTACKRGDTTLICVILNGHNSQYRDSK- 292

Query: 281 LELITSFL 288
            +L     
Sbjct: 293 -KLFDFGF 299


>gi|312876048|ref|ZP_07736037.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797246|gb|EFR13586.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 451

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 74/313 (23%), Positives = 138/313 (44%), Gaps = 38/313 (12%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQ 71
           S ++++ +  +  +    +I+ +     +++            S+I+++ +  Q+   K 
Sbjct: 2   SQFLKKAVLCLTSLALFFVILFTYPFYTYSQQESNDKLGLSAKSAILVEAHTGQILFEKN 61

Query: 72  DEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP--SKLYLKEKTYFTT 128
              R +PAS TK++T  +      S +  L+    VS  A    P  S  YL      + 
Sbjct: 62  PNLRCFPASTTKVLTALVAI----SYEHDLSKIFKVSSKATMIEPGSSSYYLNPGETISF 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           +  + A++  SAND +    E I+GS  +F   M+  AK IG +N+ + N +GLH     
Sbjct: 118 QDLLYAMLLISANDAANVIAENIAGSIPEFVEKMNEYAKSIGAKNSHFVNPNGLHSPQHY 177

Query: 189 TTARDQAILGILLRKNFPQYY-KYFSIRKFRYRN---------RIITNHNKLLNK----- 233
           TTA D +++     +N  +   K FS  ++R            +II N NKLL K     
Sbjct: 178 TTAYDLSLIARQAYQN--EILKKIFSTVEYRITTASMHKKPDWQIIYNINKLLRKNSQYY 235

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
                GIKTGYT  +   ++ S +  D  ++AV++   +S++    A++L          
Sbjct: 236 YPYATGIKTGYTAQAKRCLIASAKKNDIELIAVIL---SSEDAFSDAIKLFDYGFNN--F 290

Query: 294 KHQQTHRKDNLSS 306
           K ++   ++ +  
Sbjct: 291 KREKLFSENQIVG 303


>gi|125973686|ref|YP_001037596.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           ATCC 27405]
 gi|256005769|ref|ZP_05430722.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           thermocellum DSM 2360]
 gi|281417842|ref|ZP_06248862.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           thermocellum JW20]
 gi|125713911|gb|ABN52403.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           ATCC 27405]
 gi|255990269|gb|EEU00398.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           thermocellum DSM 2360]
 gi|281409244|gb|EFB39502.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           thermocellum JW20]
 gi|316940119|gb|ADU74153.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           thermocellum DSM 1313]
          Length = 415

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/272 (27%), Positives = 132/272 (48%), Gaps = 14/272 (5%)

Query: 28  IQLMGKILFLS---IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKM 83
             +   ILF S   +  ++   E+ A    S+I+++V + Q+   K  +   + +   K+
Sbjct: 12  FTVAMMILFFSQSPVFAVAEPPEIKAP---SAILMEVQRGQILYQKNPKLKLHVSCANKI 68

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT  I  E +Q+    LNT I VSK A +   + L L+    +  E  I +++  SAND 
Sbjct: 69  MTGLIALEKMQN---QLNTNITVSKKAVSVEGAVLNLEVGGKYPVEDLIYSVLLGSANDS 125

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           +    E+I G EK F  LM+ KA+++ M++T + N +GL+D+ Q TTA D A+L      
Sbjct: 126 ANVLAEYIGGDEKGFVELMNKKAQELEMKDTYFTNPTGLYDEKQYTTAYDLAVLIRYALT 185

Query: 204 NFPQYYKYFSIRKFRY--RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
               + + FS +   +    +I+ N N+L      +DG KTGY        +T+      
Sbjct: 186 KSSTFNEMFSAKARPWVDGTQILINSNELFWSYDGVDGGKTGYNEIDRQTAITTATRNGQ 245

Query: 262 PIVAVVMGMPTSQERDQKALELITS-FLEKKT 292
            ++ +V+  P     D  +++L+   FL  +T
Sbjct: 246 RLICIVLDSPEESMYD-DSVKLLDYGFLNFRT 276


>gi|153814792|ref|ZP_01967460.1| hypothetical protein RUMTOR_01007 [Ruminococcus torques ATCC 27756]
 gi|145847823|gb|EDK24741.1| hypothetical protein RUMTOR_01007 [Ruminococcus torques ATCC 27756]
          Length = 426

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 74/307 (24%), Positives = 134/307 (43%), Gaps = 28/307 (9%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
            S+L+A+   S++++D    ++   K  DE    AS TK+MT  +  E       +L+ +
Sbjct: 57  PSDLYAR---SAVLMDAETGRILFGKNKDEQMPMASTTKIMTCILALE-----NGNLSDK 108

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
             VS  A+ Q   KL + +   F  +  + +L+  S ND + A  E I+G+  KFA +M+
Sbjct: 109 AEVSSVASAQPKVKLGMTQGQTFYLKDLLYSLMLESHNDSAVAIAECIAGNVDKFADMMN 168

Query: 164 NKAKKIGMQNTIYKNASGLHDKN----QITTARDQAILGILLRKNFPQYYKYFSIRK--- 216
            KA ++G  +T +   +GL  ++      TTA + A +        PQ  K+  I +   
Sbjct: 169 KKASQLGCNSTYFITPNGLDGQDENGIHHTTAEELARIMRYCIMESPQKEKFLEITRADA 228

Query: 217 FRYRN------RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM-- 268
           + + +          NHN  L  M      KTG+T+++G+  V +LR     ++  ++  
Sbjct: 229 YTFTDCKGEKSYSCVNHNTFLKMMDGALSGKTGFTQDAGYCYVGALRKDGKTLIVALLAC 288

Query: 269 GMPTSQE-RDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMI---KKLKRTYSQ 324
           G P ++  +     +L+T  +E    K     + D      +K        KK K     
Sbjct: 289 GWPNNKGYKWSDTKKLMTYGMENYCYKEISPDKIDRTEKIYIKNGYTGGFPKKGKDLLEV 348

Query: 325 FKKIDAK 331
               ++K
Sbjct: 349 EISGESK 355


>gi|152974993|ref|YP_001374510.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023745|gb|ABS21515.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH
           391-98]
          Length = 373

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 63/276 (22%), Positives = 126/276 (45%), Gaps = 14/276 (5%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKM 83
           +  + +   I+ +  +  S  ++++    +++++++ +  ++   K + EP+  AS+TK+
Sbjct: 3   RAWVIVALLIMCMHTMPNSTYAQMNNVSAHNAVLMEEHSGRVLYGKREHEPQKIASITKI 62

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT  +  E  +     +   + +S  A     S +YLK       E  +  L+ RS ND 
Sbjct: 63  MTALLAAESGK-----MKEMVSISNKAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDA 117

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLR 202
           + A  E + GS + F  LM+ KAK+IGM++T + N  GL  D    ++A D A+L     
Sbjct: 118 AQAIAEKVGGSIEGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGTHYSSAYDMALLTKYAM 177

Query: 203 KNFPQYYKYFSIRKFRYR--NRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYK 259
            N   + K F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+    
Sbjct: 178 GN-ETFRKIFGTKTYQSESWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKN 236

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKH 295
               + V +   +  +     + L     ++  L  
Sbjct: 237 GLDFIVVTLKASSDWD---DHMYLFDQGFKRYKLTK 269


>gi|229166411|ref|ZP_04294167.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
 gi|228616985|gb|EEK74054.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
          Length = 382

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 70/302 (23%), Positives = 132/302 (43%), Gaps = 19/302 (6%)

Query: 18  PYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDE 73
           P G     R I ++  +L +   ++ + +        S+   ++++    ++   K + E
Sbjct: 2   PKGRGGNMRRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQGSGRVLYGKAEHE 61

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           P+  AS+TK+MT  +  E  +     +   + VS  A     S +YLK       E  + 
Sbjct: 62  PQKIASITKIMTALLAAESGK-----MKEMVAVSNEAVRVEGSAIYLKPGQKVKLEDLVY 116

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTAR 192
            L+ RS ND +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +  ++A 
Sbjct: 117 GLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAY 176

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSG 249
           D A+L      N   +   F  + ++    +    N +KL+   +    G KTG+T+ +G
Sbjct: 177 DMALLTKYAMGN-ETFKGIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAG 235

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSL 309
             +VT+       ++ V +   +  +     + L     E+   K  +   +  L+  + 
Sbjct: 236 RTLVTTASKDGLDLIVVTLSASSDWD---DHMNLFDKGFERY--KQAKVLGQGALAEINE 290

Query: 310 KK 311
           KK
Sbjct: 291 KK 292


>gi|317500314|ref|ZP_07958539.1| serine-type D-Ala-D-Ala carboxypeptidase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089679|ref|ZP_08338578.1| hypothetical protein HMPREF1025_02161 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316898255|gb|EFV20301.1| serine-type D-Ala-D-Ala carboxypeptidase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330405047|gb|EGG84585.1| hypothetical protein HMPREF1025_02161 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 426

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 131/301 (43%), Gaps = 28/301 (9%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
            S+L+A+   S++++D    ++   K  DE    AS TK+MT  +  E       +L+ +
Sbjct: 57  PSDLYAR---SAVLMDAETGRILFGKNKDEQMPMASTTKIMTCILALE-----NGNLSDK 108

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
             VS  A+ Q   KL + +   F  +  + +L+  S ND + A  E I+G+  KFA +M+
Sbjct: 109 AEVSSVASAQPKVKLGMTQGQTFYLKDLLYSLMLESHNDSAVAIAECIAGNVDKFADMMN 168

Query: 164 NKAKKIGMQNTIYKNASGLHDKN----QITTARDQAILGILLRKNFPQYYKYFSIRK--- 216
            KA ++G  +T +   +GL  ++      TTA + A +        PQ  K+  I +   
Sbjct: 169 KKASQLGCNSTYFITPNGLDGQDENGIHHTTAEELARIMRYCIMESPQKEKFLEITRADA 228

Query: 217 FRYRN------RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM-- 268
           + + +          NHN  L  M      KTG+T+++G+  V +LR     ++  ++  
Sbjct: 229 YTFTDCKGEKSYSCVNHNTFLKMMDGALSGKTGFTQDAGYCYVGALRKDGKTLIVALLAC 288

Query: 269 GMPTSQE-RDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMI---KKLKRTYSQ 324
           G P ++  +     +L+T  +E    K     + D      +K        KK K     
Sbjct: 289 GWPNNKGYKWSDTKKLMTYGMENYCYKEISPDKIDRTEKIYIKNGYTGGFPKKGKDLLEV 348

Query: 325 F 325
            
Sbjct: 349 E 349


>gi|205371955|ref|ZP_03224774.1| D-alanine carboxypeptidase [Bacillus coahuilensis m4-4]
          Length = 453

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 63/289 (21%), Positives = 130/289 (44%), Gaps = 35/289 (12%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHL 100
           ++ AS+       ++I+++    ++   K  E     AS+TKMMT +++ E +   ++  
Sbjct: 28  VAEASDPLNINADAAILVEAETGKILYEKNSETALGVASMTKMMTEFLLLEAISEGRVSF 87

Query: 101 NTQIPVSKT----AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           +  + VS      +   + S + LK  + ++ ++   ++   SAN  +    E ++GSE 
Sbjct: 88  DQMVSVSDYGHRISQDTSLSNVPLKLDSQYSIKELYESMAIYSANGATITIAEALAGSET 147

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHD--------------KNQITTARDQAILGILLR 202
            F  +M+ KA ++G++N  + N++GL++              +  + +A D A L   L 
Sbjct: 148 NFVKMMNEKAAELGLENYKFVNSTGLNNADLLGQHPQGTGETEENVMSANDTATLAYELL 207

Query: 203 KNFPQYYKYFSIRKFRYRNRI------ITNHNKLL----NKMHNIDGIKTGYTRNSGFNI 252
             +P+  +  SI K  +R  I      + N N +L         +DG+KTG T  +G + 
Sbjct: 208 TRYPEVLETASIPKLTFREGIADEQTNMDNWNWMLPSLVYGYEGMDGLKTGTTDFAGASF 267

Query: 253 VTSLRYKDDPIVAVVM------GMPTSQERDQKALELITSFLEKKTLKH 295
             + +  D   + VVM      G  T Q R ++  +++       +++ 
Sbjct: 268 TGTAKRNDMRFITVVMNAKNASGTSTYQARFEETKKMLDYAFANYSVEE 316


>gi|23098797|ref|NP_692263.1| D-alanyl-D-alanine carboxypeptidase [Oceanobacillus iheyensis
           HTE831]
 gi|22777024|dbj|BAC13298.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
           [Oceanobacillus iheyensis HTE831]
          Length = 393

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 67/278 (24%), Positives = 133/278 (47%), Gaps = 18/278 (6%)

Query: 24  IQRNIQLMGKILFLSIIM---ISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           + R   +M  I  L+  +    ++A E  +    S+I+++    Q+   K  ++  YPAS
Sbjct: 1   MLRKFYIMIIITSLNFFIWTSTTLADEDLSLHSESAILMEAESGQILAEKNANQQMYPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+ T   + E       +L+ ++ +S+ A   + + ++L E    +  + +  L+  S
Sbjct: 61  VTKIATAIYVIE-----NGNLSEEVEISEKATEADGTTVFLAEGEKVSLGKLVKGLLINS 115

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKK-IGMQNTIYKNASGLHDKNQITTARDQAILG 198
            ND   A  E ++GS ++F+  M+   ++  G++NT + N  GL D N  TTA D A + 
Sbjct: 116 GNDAGVAIAEHMNGSVREFSKEMTEFFEEKAGIENTNFDNPHGLFDDNHYTTAEDLAKIT 175

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLNK---MHNIDGIKTGYTRNSGFN 251
               +N  ++ K F ++   + ++       NH++++        + G K GY   SGF 
Sbjct: 176 KYAMQN-EKFVKLFGMKSVDWESKTWETTILNHHRMVKGEIPYDGVTGGKNGYVSRSGFT 234

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           +VT+       ++AV +  P S++  +  +EL+    E
Sbjct: 235 LVTTAEQDGMNLIAVTLKTPLSEQSYEDTVELLDYGFE 272


>gi|229058203|ref|ZP_04196591.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
 gi|228720067|gb|EEL71651.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
          Length = 362

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 132/283 (46%), Gaps = 17/283 (6%)

Query: 35  LFLSIIMISMASELHA-KPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEY 92
           ++ S+I I   ++++      ++++++    ++   K + EP+  AS+TK+MT  +  E 
Sbjct: 1   MYASVIPIPAYAKMNGGVSARNAVLMEQQSGRVLYGKLEHEPQKIASITKIMTALLAAES 60

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
            + K+L     + VS  A     S +YLK       E  +  L+ RS ND +    E + 
Sbjct: 61  GKMKEL-----VSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVG 115

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRKNFPQYYKY 211
           GS + F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L      N   + K 
Sbjct: 116 GSIEGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGN-ETFKKI 174

Query: 212 FSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+       ++ V +
Sbjct: 175 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 234

Query: 269 GMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
              +  +     + L     E+   K  +   +  ++  + KK
Sbjct: 235 SASSDWD---DHMNLFDKGFERY--KQAKVLGQGAIAEINEKK 272


>gi|30019617|ref|NP_831248.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
 gi|29895161|gb|AAP08449.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
          Length = 386

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 130/294 (44%), Gaps = 19/294 (6%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +L +   ++ + +        S+   ++++    ++   K + EP+  AS+T
Sbjct: 14  RRICVIITLLMMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASIT 73

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +   + VS  A     S +YLK       E  +  L+ RS N
Sbjct: 74  KIMTALLAAESGK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGN 128

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS   F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L   
Sbjct: 129 DAAQVIAESVGGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKY 188

Query: 201 LRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              N   + K F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+  
Sbjct: 189 AMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 247

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
                ++ V +   +  +     + L     ++   K  +   +  ++  + KK
Sbjct: 248 KGGLDLIVVTLSASSDWD---DHMNLFDKGFDR--FKQTKVLGQGAIAEINEKK 296


>gi|169825632|ref|YP_001695790.1| D-alanyl-D-alanine carboxypeptidase [Lysinibacillus sphaericus
           C3-41]
 gi|168990120|gb|ACA37660.1| D-alanyl-D-alanine carboxypeptidase precursor [Lysinibacillus
           sphaericus C3-41]
          Length = 443

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 76/349 (21%), Positives = 145/349 (41%), Gaps = 50/349 (14%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
           +F  I   + A         ++I+ID +  ++   +  D     AS+TKMMT Y++ + +
Sbjct: 21  IFAGIPAKASAETDLGLTVDAAILIDADSGKILYEQNADTSLGIASMTKMMTEYLLLDAI 80

Query: 94  QSKKLHLNTQIPVSKTAATQN----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            +  +  + +  V+      +     S + L+    +T  +   A+   SAN  + A  E
Sbjct: 81  DAGTVKWDQEYHVTDYTYRMSQNRALSNVPLRRDGSYTIRELYEAMAIYSANAATVAIAE 140

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------------QITTARDQA 195
            I+G+E +F  LM+ KA+++G++   + NA+GL++ +               +  A+  A
Sbjct: 141 TIAGTETEFLKLMNKKAEELGLEGYKFVNATGLNNADLFGMHPAGTGPEDENVMPAKYVA 200

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNK----MHNIDGIKTGYTR 246
            L   L K+ P+  +   I K  +R        ++N N +L         +DG+KTG T 
Sbjct: 201 KLAYHLLKDHPKVLETSQITKKTFREGTEDAIEMSNWNFMLPGLVFEYQGVDGLKTGTTN 260

Query: 247 NSGFNIVTSLRYKDDPIVAVVM------GMPTSQERDQKALELITSFLEK---------- 290
            +G     +       ++AVVM      G  + + R     +L      +          
Sbjct: 261 FAGHCFTGTAERNGTRLIAVVMKAVDASGQGSYKARFDATAKLFNYGFSQFSKQEILPAN 320

Query: 291 KTLKHQQTHR----KDNLSSTSLKK--SLMIKKLKRTYSQFKKIDAKAH 333
            T K Q+T +    K++    ++K+  S MIK   +   + K +  K  
Sbjct: 321 YTFKDQKTVKVTKGKEDKVEIAVKEPISFMIKSSDKDLYKPKLVLDKKS 369


>gi|164686325|ref|ZP_02210355.1| hypothetical protein CLOBAR_02763 [Clostridium bartlettii DSM
           16795]
 gi|164601927|gb|EDQ95392.1| hypothetical protein CLOBAR_02763 [Clostridium bartlettii DSM
           16795]
          Length = 442

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 80/320 (25%), Positives = 139/320 (43%), Gaps = 40/320 (12%)

Query: 34  ILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
           I  ++  +++ A E +      +   +VID    ++ G K  D   YPAS TK+ T Y++
Sbjct: 2   ITLINSSIVAFADETYDNVDLMANYGVVIDYETGKVLGGKNIDSKVYPASTTKIWTAYLV 61

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            + +++    L+  + +++     + S +YL+    FT  + +  L+  S+ND +    +
Sbjct: 62  VKNVKN----LDEPVEITEPPG-VDGSSMYLEVGEIFTVRELLQGLLIHSSNDAAVVLAK 116

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
           ++SGS + FA LM+ +AKK G  NT + N  GL D N  TT  D A+L            
Sbjct: 117 YVSGSTQDFAQLMNKEAKKAGALNTHFNNPHGLPDDNHYTTPYDMAMLARKAMSE-KVIR 175

Query: 210 KYFSIRKFRYR-----------NRIITNHNKLLN--------------KMHNIDGIKTGY 244
           +  S +   ++           +R  TN N  L               K   +DGIKTGY
Sbjct: 176 EIVSTKSISFKQQNTATSKINTSRYFTNTNLFLTSNDKITYRKQSIPIKYDIVDGIKTGY 235

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNL 304
           T  +G  +++S    D  ++A V     +      +  L+    E  T   +    KD+ 
Sbjct: 236 TDLAGRCLLSSAVKNDMRVIAAVFKSFGTNV-YVDSRTLLDYGFENYT--SKTIINKDDY 292

Query: 305 SSTSLKKSLMIKKLKRTYSQ 324
           + T  K+ L  K+ +  Y  
Sbjct: 293 TKT--KRVLFTKEKEFIYQP 310


>gi|284047000|ref|YP_003397340.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Conexibacter
           woesei DSM 14684]
 gi|283951221|gb|ADB53965.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Conexibacter
           woesei DSM 14684]
          Length = 284

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 112/258 (43%), Gaps = 12/258 (4%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSK 96
           ++      ++L   P  ++IV D    ++    +   R    S  K+MT  +  E     
Sbjct: 32  AVGTAPQNAQLKLPPHSAAIVADARTGRVLYADRPHRRLLIGSTAKLMTALVALE----- 86

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           +  L         A     S++ L           +  L+  S ND + A  E ++GS++
Sbjct: 87  RTSLEDSFTAPAYAGDPTESRVGLGTDEQLLVGDLLRGLLVVSGNDAAIALAEGVAGSQE 146

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F  LM+ +A+++GM +T Y N  GL D    ++A D   L   LR+    + +  +   
Sbjct: 147 AFVELMNERAQELGMSDTRYGNPIGLDD-GTSSSAADLVTLTRELRR-HDAFREIVASPS 204

Query: 217 FRYRN----RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
               +    R + N N LL     +DG+KTG+T+ +G+ +V S       +++ V+G  +
Sbjct: 205 VTLSSGAVARTLENTNDLLGGPLAVDGVKTGHTKAAGYVLVGSATRGGRAVISAVLGTRS 264

Query: 273 SQERDQKALELITSFLEK 290
             +RD+  + L+   L +
Sbjct: 265 EADRDRATMTLLRHGLRR 282


>gi|28211195|ref|NP_782139.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88]
 gi|28203635|gb|AAO36076.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88]
          Length = 374

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 68/284 (23%), Positives = 123/284 (43%), Gaps = 16/284 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + I +D N   +   +  E   P AS TK++T  +  +Y       L+  + +S  A+
Sbjct: 41  ARAYIALDANSKVVLAGRNSEVIMPMASTTKILTALVTLKYGD-----LDKMVEISPKAS 95

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S    K+    + ++ +  L+ RS ND + A  E ++GSE++F  LM+  A  +G+
Sbjct: 96  SIRGSVAGYKKGEEISLKELLFGLMLRSGNDAAIAIAEGVAGSEEEFVRLMNEYAASLGL 155

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN----RIITNH 227
            ++ + +  GL      +T  D AIL     K  P +++  S +          R   N 
Sbjct: 156 IDSHFCSPHGLDSAEHYSTVYDLAILTAE-SKKHPLFHEIVSTKDITKDKYSFSRDYHNI 214

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           NK+L ++ N  G+KTGYT  +G  +V+S+      ++ VV+  P   +   K    +   
Sbjct: 215 NKILWQLPNATGVKTGYTGGAGKCLVSSVDISGREVIIVVLDCPGRWKETTKVNNYVKKN 274

Query: 288 LEKKTLKHQ-----QTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
            E K L  +     +  +         K+ ++I   K T    K
Sbjct: 275 YEYKKLHSKGEVVAKAPKDKKNIDLVCKEDIIIPTEKGTDYSVK 318


>gi|323483957|ref|ZP_08089330.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum
           WAL-14163]
 gi|323693446|ref|ZP_08107657.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum
           WAL-14673]
 gi|323402673|gb|EGA94998.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum
           WAL-14163]
 gi|323502501|gb|EGB18352.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum
           WAL-14673]
          Length = 431

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 59/270 (21%), Positives = 117/270 (43%), Gaps = 26/270 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++++D +  ++   K++   R  AS TK+MT  +  E     + +    + +S  AA
Sbjct: 70  AQSAVLMDASTGRILYGKEETIKRPMASTTKIMTCILALE-----QGNPEDMVEISSYAA 124

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +    +L ++    +  +  + +L+  S ND + A  E I G+ + FA +M+ KA+ IG 
Sbjct: 125 SMPDVQLNIRAGEKYRLQDLLYSLMLESHNDSAVAVAEHIGGTVEGFAEMMNQKARDIGC 184

Query: 172 QNTIYKNASGL------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-- 223
            +T +   +GL        +   TTA D A +     +  P+  ++  I +   R     
Sbjct: 185 TDTCFVTPNGLDGTRKADGEPHSTTAADLARIMRYCVEQSPKSREFLEITRTASRTITDE 244

Query: 224 -------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM---PTS 273
                  + NHN LL+ M      KTG+T N+G+  V +L+  D      ++G    P  
Sbjct: 245 SGKRSFYLGNHNALLSMMPEALSGKTGFTGNAGYCYVAALKKDDKEFTVALLGCGWPPHK 304

Query: 274 QERDQKALELITSFLEKKTLKHQQTHRKDN 303
             + +   ++  +     +  + +   K+ 
Sbjct: 305 TYKWEDMRKI--AGFAFDSYDYYEIFEKNK 332


>gi|168186274|ref|ZP_02620909.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum C str.
           Eklund]
 gi|169295810|gb|EDS77943.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum C str.
           Eklund]
          Length = 375

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 72/277 (25%), Positives = 131/277 (47%), Gaps = 15/277 (5%)

Query: 30  LMGKILFLSIIMISMASELHAK------PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           ++   L  +I  +     +  K          +I +D     +   K  E   P AS TK
Sbjct: 10  ILNICLLFNIAFVPFVEAVEPKNKSIYVDARCAIAMDSKSKCVLYEKNSEMLVPIASTTK 69

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT  +  +Y      +L+ +  VS  AA+   SK+  K+    + ++ +  L+ RS ND
Sbjct: 70  IMTTLVALKYG-----NLDRKFEVSPKAASIRGSKVGYKKGEQISLKELLYGLMLRSGND 124

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            +    E +SGS +KF  LM+  A +IG  N+ +++  GL  +N  +TA D A +    +
Sbjct: 125 AAITIAEGMSGSVEKFCELMNEYAIEIGAFNSHFESPHGLDSQNHYSTAYDLARITAKAK 184

Query: 203 KN--FPQYYKYFSIRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           +N  F +      + + ++   R   N NK+L ++ N +G+KTGYT  +G  +VTS++  
Sbjct: 185 ENKLFNEIVGVKDVDEKKFGFTRSYHNINKILYQIPNANGVKTGYTGGAGKCLVTSVKEN 244

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQ 296
           DD ++ VV+      +  +K  + +    + K L  +
Sbjct: 245 DDDVIIVVLNCTPRWKETKKIYDFVKENYDFKKLASK 281


>gi|312135071|ref|YP_004002409.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1
           [Caldicellulosiruptor owensensis OL]
 gi|311775122|gb|ADQ04609.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Caldicellulosiruptor owensensis OL]
          Length = 451

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 79/312 (25%), Positives = 137/312 (43%), Gaps = 36/312 (11%)

Query: 21  SIYIQRNIQ-LMGKILFLSIIMI--------SMASELHAKPKYSSIVIDVNKNQMTGFKQ 71
           S ++++ +  L+  +LF +I+            AS+       S+I+++ +  Q+   K 
Sbjct: 2   SQFLKKVVLYLIISVLFFAILFTYPFYTYSQQEASDKLGLSAKSAILVEAHTGQILFEKN 61

Query: 72  DEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP--SKLYLKEKTYFTT 128
              R +PAS TK++T  +      S +  LN    VS  A    P  S  YL      + 
Sbjct: 62  PNLRCFPASTTKVLTALVAI----SYEHDLNKIFKVSSKATMIEPGSSSYYLNPGETISF 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           +  + A++  SAND +    E I+GS  +F   M+  AK IG +N+ + N  GLH     
Sbjct: 118 QDLLYAMLLISANDAANVIAENIAGSIPEFVKKMNEYAKSIGAKNSYFVNPHGLHSPEHY 177

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRN---------RIITNHNKLLNK-----M 234
           TTA D +++     +N     K FS  ++R            +II N NKLL K      
Sbjct: 178 TTAYDLSLIARQAYQNEI-LRKIFSTVEYRITTASMHEKPEWQIIYNINKLLRKNSKYYY 236

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
               GIKTGYT  +   ++ S +  D  ++A+++    S++    A++L          K
Sbjct: 237 PYATGIKTGYTTQAKRCLIASAKKDDIELIAIIL---FSEDAFSDAIKLFNYGFNN--FK 291

Query: 295 HQQTHRKDNLSS 306
            ++   ++ +  
Sbjct: 292 REKLFSENQIVG 303


>gi|229172207|ref|ZP_04299771.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
 gi|228611195|gb|EEK68453.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
          Length = 362

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 130/283 (45%), Gaps = 17/283 (6%)

Query: 35  LFLSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEY 92
           ++ S+I I   +++++     ++++++    ++   K + EP+  AS+TK+MT  +  E 
Sbjct: 1   MYASVIPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAES 60

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
            +     +   + VS  A     S +YLK       E  +  L+ RS ND +    E + 
Sbjct: 61  GK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVG 115

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRKNFPQYYKY 211
           GS + F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L      N   + K 
Sbjct: 116 GSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGN-ETFKKI 174

Query: 212 FSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+       ++ V +
Sbjct: 175 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 234

Query: 269 GMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
              +  +     + L     E+   K      +  L+  + KK
Sbjct: 235 SASSDWD---DHMNLFDKGFER--FKQTNVVGQGALAEITEKK 272


>gi|327438154|dbj|BAK14519.1| D-alanyl-D-alanine carboxypeptidase [Solibacillus silvestris
           StLB046]
          Length = 445

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 136/297 (45%), Gaps = 38/297 (12%)

Query: 34  ILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYI 88
           IL LS++ ++ A    A        ++I+ID +  ++   +  E     AS+TKMMT Y+
Sbjct: 17  ILILSMLAMTPAKTHAATDLGLTVDAAILIDADTGKILYEQNAETALGIASMTKMMTEYL 76

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQN----PSKLYLKEKTYFTTEQGILALITRSANDVS 144
           + + ++   +  + +  V++     +     S + L+    +T ++   A+   SAN  +
Sbjct: 77  LLDAIKEGSISWDQEYNVTEYTYKVSQNRLLSNVPLRADGTYTIKELYEAMAIYSANAAT 136

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------------QITT 190
            A  E I+G+EK+F  LM  KA+++G++N  + NA+GL++ +               +  
Sbjct: 137 IAIAETIAGTEKEFLKLMDKKAEELGLENYKFVNATGLNNADLQGMHPEGTGEKDENVMP 196

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL----NKMHNIDGIK 241
           AR  A L   L K+ P+  +   I K  +R        ++N N +L     +   +DG+K
Sbjct: 197 ARSVAKLAYNLLKDHPEMLETAKIPKKVFREGTSDAISMSNWNFMLPGLVYEYEGVDGLK 256

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVM------GMPTSQERDQKALELITSFLEKKT 292
           TG T  +G     + +  D  ++AVVM      G+ + + R     +L      + +
Sbjct: 257 TGTTDFAGHTFTGTAKRGDTRLIAVVMKAVDSNGVGSYKARFDATAKLFDYGFGQFS 313


>gi|168205928|ref|ZP_02631933.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens E str.
           JGS1987]
 gi|170662569|gb|EDT15252.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens E str.
           JGS1987]
          Length = 444

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 81/339 (23%), Positives = 157/339 (46%), Gaps = 26/339 (7%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSS--IVIDVNKNQMTGFKQ- 71
           ++  + ++ I+ N  +    +F  I+  ++ +E +         +++D    ++   K  
Sbjct: 1   MSIKFKNLKIKLNFIISMAFIFSLILSTNVFAESNVPEIKGEGMVLMDGTTGEVLAEKNA 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +E   PAS TK MT  +  E     K +LN  + + K       +++ L+E   +T E+ 
Sbjct: 61  NEKLAPASTTKTMTALLTVE-----KANLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEEL 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + AL+ +SAND + A  E ISGSE+KFA LM+ +A+++G +NT + NASGL +++ +TT 
Sbjct: 116 LNALLIQSANDAAVALAEHISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEEDHMTTP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRN-------RIITNHNKLLNK-----MHNIDG 239
            D A++     KN P   +      +               N+N+L+++       +I  
Sbjct: 176 YDLALIMNAASKN-PIIDEITKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFC 234

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTH 299
            KTGYT  S      + +  D  ++  ++G  T  +  +    L+    +  +L   + +
Sbjct: 235 NKTGYTTKSKHTFTCAAKRGDRKLILTLLGYDTKDQYYEDTKNLLDYGFDNFSLV--KLY 292

Query: 300 RKDNLSS---TSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
            K+++        K +L +   +  Y  FK  + +  ST
Sbjct: 293 SKNDVVKEYYIDDKNTLSLVVPEDIYKTFKNSEIENLST 331


>gi|300117503|ref|ZP_07055293.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus SJ1]
 gi|298725338|gb|EFI65990.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus SJ1]
          Length = 374

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 140/326 (42%), Gaps = 27/326 (8%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +L +   ++ + +        S+   ++++ +  ++   K + EP+  AS+T
Sbjct: 2   RRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASIT 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +   + VS  A     S +YLK       E  +  L+ RS N
Sbjct: 62  KIMTALLAAESGK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGN 116

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L   
Sbjct: 117 DAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTRY 176

Query: 201 LRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              N   + K F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+  
Sbjct: 177 AMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 235

Query: 258 YKDDPIVAVVMGMPTSQ-----------ERDQKALELITSFLEKKTLKHQQ--THRKDNL 304
             +  ++ V +   +             +R  +   L    L + T K      + K++ 
Sbjct: 236 KDELDLIVVTLSASSDWDDHMNLFDKGFDRFAQTKVLGQGALAEITEKKYANHVYTKNSF 295

Query: 305 SSTSLKKSLMIKKLKRTYSQFKKIDA 330
           S    ++      LK    +  K+  
Sbjct: 296 SVPLTEEEKKSVVLKVELDKSAKLVD 321


>gi|218232835|ref|YP_002366250.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           B4264]
 gi|296502139|ref|YP_003663839.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
 gi|218160792|gb|ACK60784.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus B4264]
 gi|296323191|gb|ADH06119.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
          Length = 374

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 130/294 (44%), Gaps = 19/294 (6%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +L +   ++ + +        S+   ++++    ++   K + EP+  AS+T
Sbjct: 2   RRICVIITLLMMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASIT 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +   + VS  A     S +YLK       E  +  L+ RS N
Sbjct: 62  KIMTALLAAESGK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGN 116

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS   F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L   
Sbjct: 117 DAAQVIAESVGGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKY 176

Query: 201 LRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              N   + K F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+  
Sbjct: 177 AMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 235

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
                ++ V +   +  +     + L     ++   K  +   +  ++  + KK
Sbjct: 236 KGGLDLIVVTLSASSDWD---DHMNLFDKGFDR--FKQTKVLGQGAIAEINEKK 284


>gi|229149767|ref|ZP_04277997.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
 gi|228633798|gb|EEK90397.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
          Length = 378

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 130/294 (44%), Gaps = 19/294 (6%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +L +   ++ + +        S+   ++++    ++   K + EP+  AS+T
Sbjct: 6   RRICVIITLLMMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASIT 65

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +   + VS  A     S +YLK       E  +  L+ RS N
Sbjct: 66  KIMTALLAAESGK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGN 120

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS   F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L   
Sbjct: 121 DAAQVIAESVGGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKY 180

Query: 201 LRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              N   + K F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+  
Sbjct: 181 AMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 239

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
                ++ V +   +  +     + L     ++   K  +   +  ++  + KK
Sbjct: 240 KGGLDLIVVTLSASSDWD---DHMNLFDKGFDR--FKQTKVLGQGAIAEINEKK 288


>gi|126652926|ref|ZP_01725068.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. B14905]
 gi|126590256|gb|EAZ84378.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. B14905]
          Length = 439

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 75/349 (21%), Positives = 145/349 (41%), Gaps = 50/349 (14%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
           +F  I   + A         ++I+ID +  ++   +  D     AS+TKMMT Y++ + +
Sbjct: 17  IFAGIPAKANAETDLGLTVDAAILIDADSGKILYEQNADTSLGIASMTKMMTEYLLLDAI 76

Query: 94  QSKKLHLNTQIPVSKTAATQN----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            +  +  + +  V+      +     S + L+    +T  +   A+   SAN  + A  E
Sbjct: 77  DAGTVKWDQEYHVTDYTYRMSQNRALSNVPLRRDGSYTIRELYEAMAIYSANAATVAIAE 136

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------------QITTARDQA 195
            I+G+E +F  LM+ KA+++G++   + N++GL++ +               +  A+  A
Sbjct: 137 TIAGTETEFLKLMNKKAEELGLEGYKFVNSTGLNNADLFGMQPAGTGPEDENVMPAKYVA 196

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNK----MHNIDGIKTGYTR 246
            L   L K+ P+  +   I K  +R        ++N N +L         +DG+KTG T 
Sbjct: 197 KLAYHLLKDHPKVLETSQITKKTFREGTEDAIEMSNWNFMLPGLVFEYQGVDGLKTGTTN 256

Query: 247 NSGFNIVTSLRYKDDPIVAVVM------GMPTSQERDQKALELITSFLEK---------- 290
            +G     +       ++AVVM      G  + + R     +L      +          
Sbjct: 257 FAGHCFTGTAERNGTRLIAVVMKAVDASGQGSYKARFDATAKLFNYGFSQFSKQEILPAN 316

Query: 291 KTLKHQQTHR----KDNLSSTSLKK--SLMIKKLKRTYSQFKKIDAKAH 333
            T K Q+T +    K++    ++K+  S MIK   +   + K +  K  
Sbjct: 317 YTFKDQKTVKVTKGKEDKVEIAVKEPISFMIKSSDKDLYKPKLVLDKKS 365


>gi|228957844|ref|ZP_04119584.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228801760|gb|EEM48637.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 363

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 68/284 (23%), Positives = 132/284 (46%), Gaps = 17/284 (5%)

Query: 34  ILFLSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFE 91
           +++ S++ I   +++++     ++++++    ++   K + EP+  AS+TK+MT  +  E
Sbjct: 1   MMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAE 60

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
             + KK      + VS  A     S +YLK       E  +  L+ RS ND +    E +
Sbjct: 61  SGKMKK-----MVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESV 115

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRKNFPQYYK 210
            GS   F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L      N   + K
Sbjct: 116 GGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGN-ETFKK 174

Query: 211 YFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+       ++ V 
Sbjct: 175 IFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKGGLDLIVVT 234

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
           +   +  +     + L     E+   K  +   +  ++  + KK
Sbjct: 235 LSASSDWD---DHMNLFDKGFER--FKQTKVLGQGAIAEINEKK 273


>gi|229090529|ref|ZP_04221765.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
 gi|228692796|gb|EEL46519.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
          Length = 310

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 133/294 (45%), Gaps = 19/294 (6%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +L +   ++ + +        S+   ++++ +  ++   K + EP+  AS+T
Sbjct: 6   RRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASIT 65

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +  ++ VS  A     S +YLK       E  +  L+ RS N
Sbjct: 66  KIMTALLAAESGK-----MKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGN 120

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS + F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L   
Sbjct: 121 DAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTRY 180

Query: 201 LRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              N   + K F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+  
Sbjct: 181 AMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 239

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
                ++ V +   +  +     + L     ++   +  +   +  L+  + KK
Sbjct: 240 KDGLDLIVVTLSASSDWD---DHMNLFDKGFDR--FEQTKVLGQGALAEITEKK 288


>gi|118589859|ref|ZP_01547263.1| penicillin binding protein [Stappia aggregata IAM 12614]
 gi|118437356|gb|EAV43993.1| penicillin binding protein [Stappia aggregata IAM 12614]
          Length = 384

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 70/276 (25%), Positives = 127/276 (46%), Gaps = 7/276 (2%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
           R   L   ++  SI   + A+E        + + +     +   K+ D P  P +L K+M
Sbjct: 2   RRGALFSFLVVASIAGPAQAAETIVTKAPMAFLYEPASGTILFAKEPDRPFSPGALVKVM 61

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS------KLYLKEKTYFTTEQGILALITR 138
           T   +F+ L+   L L+    VS+ A     +       ++   K+    E  +  L+  
Sbjct: 62  TAATVFKSLKDGDLKLDQTCKVSEHAWRTGGAPSGRGATMFAAIKSDIPVEDLLKGLLVH 121

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           + ND +    E + GSE+ FA+ M+  A  IGM+N+ + N++G  +    TT RDQA L 
Sbjct: 122 NGNDAAIVLAECLDGSEEAFAVRMTEFAHAIGMKNSRFGNSTGYPEVPSQTTVRDQARLA 181

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             + ++    Y  F+I +F +      N N LL ++ N+DG+  G    +G++ + S+  
Sbjct: 182 EYILESHADLYPMFAIPEFTWNKIFQRNKNPLLGEIRNLDGLGGGNDAEAGYSGLGSVDR 241

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
               ++A V G+ + + R Q   E+I    E  T++
Sbjct: 242 NGRRVIAAVAGLSSDKHRLQTLKEVIEGAWEYFTVQ 277


>gi|218508407|ref|ZP_03506285.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli Brasil
           5]
          Length = 312

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 74/235 (31%), Positives = 122/235 (51%), Gaps = 5/235 (2%)

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
           + ++ L+T I +SK AA Q  +K+Y K     T +  +  L+ +SAND++ A  E + G+
Sbjct: 1   AGQISLDTPIVMSKRAAAQPAAKMYFKPGQKLTLDSALKILMVKSANDIAVAVAEAVGGT 60

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           ++ F   M+ +A K+GM ++ + N +GL  K Q TTARD A+L + LR++FPQY  YFS+
Sbjct: 61  QEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALRRDFPQYAGYFSL 120

Query: 215 RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
             F    + + N N L+ +    DG+KTG+   SGFN + S       +V+VV+G  +  
Sbjct: 121 EGFTTGQQNVPNLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRTLVSVVLGTDSLA 180

Query: 275 ERDQKALELI-----TSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
            R      L+     T F    TL   + + +     T +   +   K  +  S+
Sbjct: 181 ARADATANLLQKGLTTQFPGNDTLGSLKPYGQGQDQVTDITADICSAKGAKIRSE 235


>gi|225388033|ref|ZP_03757757.1| hypothetical protein CLOSTASPAR_01767 [Clostridium asparagiforme
           DSM 15981]
 gi|225045886|gb|EEG56132.1| hypothetical protein CLOSTASPAR_01767 [Clostridium asparagiforme
           DSM 15981]
          Length = 510

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 80/279 (28%), Positives = 124/279 (44%), Gaps = 28/279 (10%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A E        + +++ +  ++   K  D   YPAS+TK+MT  ++ E       +L+  
Sbjct: 137 AVEEPVIAAEGAALLNASTGKLLFSKNGDTKFYPASITKLMTALLVAE-----NCNLDDT 191

Query: 104 IPVSKTAAT---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
           +  S TA T        L L E    T  Q + AL+ +SAN+V  A  E ++GS  KFA 
Sbjct: 192 VTFSSTATTNLEAGAVSLNLVEGDKLTVRQCLYALLLKSANEVGNALAEHVAGSNAKFAD 251

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN-------FPQYYKYFS 213
           +M+ +A  +G  NT + N  GL+D +  TT  D A++     +N           Y   +
Sbjct: 252 MMNARAAALGCTNTHFTNPHGLNDNDHYTTPNDMALIAKAAFENGTVRTVASTLSYDLPA 311

Query: 214 IRKFRYRNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            +K   R   I   +K+L          I G KTGYT  +G  +VT++      ++AVVM
Sbjct: 312 TKKNAARTISIG--HKMLYPNDSRYYAGIIGGKTGYTSKAGNTLVTAVERDGVRLIAVVM 369

Query: 269 GMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSST 307
              ++   D KA  L+    E   L  QQT    + S  
Sbjct: 370 KSKSTHYTDTKA--LLDYGFE---LAKQQTTEGADDSGP 403


>gi|323487044|ref|ZP_08092353.1| D-alanyl-D-alanine carboxypeptidase [Clostridium symbiosum
           WAL-14163]
 gi|323399635|gb|EGA92024.1| D-alanyl-D-alanine carboxypeptidase [Clostridium symbiosum
           WAL-14163]
          Length = 486

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 70/259 (27%), Positives = 115/259 (44%), Gaps = 26/259 (10%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E        +++ D   N+    +  + R YPAS+TK+MT  ++ E     +  L+  + 
Sbjct: 96  ETPVVASQGAVLYDALNNRFLFEQNADTRFYPASITKLMTALLVLE-----RSSLDDTVT 150

Query: 106 VSKTAAT---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            S+ A T        L +K    F+ +  + AL+ +SAN+V+    E ++GS   FA LM
Sbjct: 151 FSENAVTNLEAGAVTLKIKAGDKFSVKDCMYALLLKSANEVANGLAEHVAGSVSGFADLM 210

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN-------------FPQYY 209
           + KA  +G  NT + N +GL+D N  TTARD A++     +N             FP   
Sbjct: 211 NQKAASLGCTNTHFVNPNGLNDSNHYTTARDMALIAKAAFENQTLSQIASTVSYDFPATA 270

Query: 210 KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
              ++RK    ++++   N        I G KTGYT  +G  +VT        ++AVV+ 
Sbjct: 271 SVPTVRKLTMGHKMVNPANG--EYYQGIVGGKTGYTSLAGNTLVTCAERDGKRLIAVVL- 327

Query: 270 MPTSQERDQKALELITSFL 288
             + Q        L+    
Sbjct: 328 -KSKQTHYTDTKALLDYGF 345


>gi|229010872|ref|ZP_04168069.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
 gi|229132375|ref|ZP_04261229.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
 gi|228651081|gb|EEL07062.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
 gi|228750546|gb|EEM00375.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
          Length = 362

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 132/283 (46%), Gaps = 17/283 (6%)

Query: 35  LFLSIIMISMASELHA-KPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEY 92
           ++ S++ I   ++++      ++++++    ++   K + EP+  AS+TK+MT  +  E 
Sbjct: 1   MYASVMPIPAYAKMNGGVSARNAVLMEQQSGRVLYGKLEHEPQKIASITKIMTALLAAES 60

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
            + K+L     + VS  A     S +YLK       E  +  L+ RS ND +    E + 
Sbjct: 61  GKMKEL-----VSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVG 115

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRKNFPQYYKY 211
           GS + F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L      N   + K 
Sbjct: 116 GSIEGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGN-ETFKKI 174

Query: 212 FSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+       ++ V +
Sbjct: 175 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 234

Query: 269 GMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
              +  +     + L     E+   K  +   +  L+  + KK
Sbjct: 235 SASSDWD---DHMNLFDKGFERY--KQAKVLGQGALAEINEKK 272


>gi|229029247|ref|ZP_04185338.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
 gi|228732060|gb|EEL82951.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
          Length = 366

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 130/287 (45%), Gaps = 17/287 (5%)

Query: 31  MGKILFLSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYI 88
           M  I++ S++ I   +++++     ++++++    ++   K +   +  AS+TK+MT  +
Sbjct: 1   MLLIMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHESQKIASITKIMTALL 60

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
             E  +     +   + VS  A     S +YLK       E  +  L+ RS ND +    
Sbjct: 61  AAESGK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIA 115

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRKNFPQ 207
           E + GS + F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L      N   
Sbjct: 116 ENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGN-ET 174

Query: 208 YYKYFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           + K F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+       ++
Sbjct: 175 FKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLI 234

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
            V +   +  +     + L     E+   K      +  L+  + KK
Sbjct: 235 VVTLSASSDWD---DHMNLFDKGFER--FKQTNVVGQGALAEITEKK 276


>gi|182624061|ref|ZP_02951849.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens D str.
           JGS1721]
 gi|177910954|gb|EDT73308.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens D str.
           JGS1721]
          Length = 444

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 81/339 (23%), Positives = 156/339 (46%), Gaps = 26/339 (7%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSS--IVIDVNKNQMTGFKQ- 71
           ++  + ++ I+ N  +    +F  I+  ++ +E +         +++D    ++   K  
Sbjct: 1   MSIKFKNLKIKLNFIISMAFIFSLILSTNVFAESNVPEIKGEGMVLMDGTTGEVLAEKNA 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +E   PAS TK MT  +  E     K +LN  + + K       +++ L+E   +T E+ 
Sbjct: 61  NEKLAPASTTKTMTALLTVE-----KANLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEEL 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + AL+ +SAND + A  E ISGSE+KFA LM+ +A+++G +NT + NASGL + + +TT 
Sbjct: 116 LNALLIQSANDAAVALAEHISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRN-------RIITNHNKLLNK-----MHNIDG 239
            D A++     KN P   +      +               N+N+L+++       +I  
Sbjct: 176 YDLALIMNAASKN-PIIDEITKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFC 234

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTH 299
            KTGYT  S      + +  D  ++  ++G  T  +  +    L+    +  +L   + +
Sbjct: 235 NKTGYTTKSRHTFTCAAKRGDRKLILTLLGYDTKDQYYEDTKNLLDYGFDNFSLV--KLY 292

Query: 300 RKDNLSS---TSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
            K+++        K +L +   +  Y  FK  + +  ST
Sbjct: 293 SKNDVVKEYYIDDKNTLSLVVPEDIYKTFKNSEIENLST 331


>gi|18311103|ref|NP_563037.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens str.
           13]
 gi|18145786|dbj|BAB81827.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens str.
           13]
          Length = 444

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 81/339 (23%), Positives = 156/339 (46%), Gaps = 26/339 (7%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSS--IVIDVNKNQMTGFKQ- 71
           ++  + ++ I+ N  +    +F  I+  ++ +E +         +++D    ++   K  
Sbjct: 1   MSIKFKNLKIRLNFIISMAFIFSLILSTNVFAESNVPEIKGEGMVLMDGTTGEVLAEKNA 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +E   PAS TK MT  +  E     K +LN  + + K       +++ L+E   +T E+ 
Sbjct: 61  NEKLAPASTTKTMTALLTVE-----KANLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEEL 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + AL+ +SAND + A  E ISGSE+KFA LM+ +A+++G +NT + NASGL + + +TT 
Sbjct: 116 LNALLIQSANDAAVALAEHISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRN-------RIITNHNKLLNK-----MHNIDG 239
            D A++     KN P   +      +               N+N+L+++       +I  
Sbjct: 176 YDLALIMNAASKN-PIIDEITKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFC 234

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTH 299
            KTGYT  S      + +  D  ++  ++G  T  +  +    L+    +  +L   + +
Sbjct: 235 NKTGYTTKSRHTFTCAAKRGDRKLILTLLGYDTKDQYYEDTKNLLDYGFDNFSLV--KLY 292

Query: 300 RKDNLSS---TSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
            K+++        K +L +   +  Y  FK  + +  ST
Sbjct: 293 SKNDVVKEYYIDDKNTLSLVVPEDIYKTFKNSEIENLST 331


>gi|163939383|ref|YP_001644267.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
 gi|163861580|gb|ABY42639.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
          Length = 374

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 132/283 (46%), Gaps = 17/283 (6%)

Query: 35  LFLSIIMISMASELHA-KPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEY 92
           ++ S++ I   ++++      ++++++    ++   K + EP+  AS+TK+MT  +  E 
Sbjct: 13  MYASVMPIPAYAKMNGGVSARNAVLMEQQSGRVLYGKLEHEPQKIASITKIMTALLAAES 72

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
            + K+L     + VS  A     S +YLK       E  +  L+ RS ND +    E + 
Sbjct: 73  GKMKEL-----VSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVG 127

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRKNFPQYYKY 211
           GS + F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L      N   + K 
Sbjct: 128 GSIEGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGN-ETFKKI 186

Query: 212 FSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+       ++ V +
Sbjct: 187 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 246

Query: 269 GMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
              +  +     + L     E+   K  +   +  L+  + KK
Sbjct: 247 SASSDWD---DHMNLFDKGFERY--KQAKVLGQGALAEINEKK 284


>gi|253682141|ref|ZP_04862938.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum D
           str. 1873]
 gi|253561853|gb|EES91305.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum D
           str. 1873]
          Length = 377

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 81/327 (24%), Positives = 148/327 (45%), Gaps = 24/327 (7%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHA-KPK--------YSSIVIDVNKNQMTGFKQDEP 74
           +++ I +   +    +  I+ A  + A  PK         S+I ID     +   K  + 
Sbjct: 1   MKKRILIFMVLSMCLLFNITFAYNVQAITPKNKLIYINARSAIAIDSKTKCVLYEKNSDM 60

Query: 75  RYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
             P AS TK+MT  +  +Y      +L+ +  VS  AA    S++  K+    + ++ + 
Sbjct: 61  LLPIASTTKIMTTLVALKYG-----NLDDKFEVSSKAANIRGSQVGYKKGESISLKELLY 115

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L+ RS ND +    E +SGS +KF  LM+  A +IG  N+ +++  GL  +N  +TA D
Sbjct: 116 GLMLRSGNDAAITIAEGLSGSVEKFCELMNEYAVEIGALNSHFESPHGLDSQNHYSTAYD 175

Query: 194 QAILGILLRKN--FPQYYKYFSIRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
            A +    ++N  F +      +    Y   R   N NK+L ++ N +G+KTGYT  +G 
Sbjct: 176 LARITAKAKENELFNKIVAVKDVEAKEYGFTRSYHNINKILYQIPNANGVKTGYTGGAGK 235

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQ------THRKDNL 304
            +VTS++  DD I+ VV+      +   K  + +    + K +  +        +  +  
Sbjct: 236 CLVTSVKDNDDDIIIVVLNCTPRWKETGKIYKFVKENYDFKKITSKNQVIGNIIYNGNKK 295

Query: 305 SSTSLKKSLMIKKLKRTYSQFKKIDAK 331
                 K +++   K+ + +FK +  K
Sbjct: 296 IDLICNKDIVVPVGKQEHCEFKIVKPK 322


>gi|168212842|ref|ZP_02638467.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens CPE
           str. F4969]
 gi|170715638|gb|EDT27820.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens CPE
           str. F4969]
          Length = 444

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 81/339 (23%), Positives = 156/339 (46%), Gaps = 26/339 (7%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSS--IVIDVNKNQMTGFKQ- 71
           ++  + ++ I+ N  +    +F  I+  ++ +E +         +++D    ++   K  
Sbjct: 1   MSIKFKNLKIKLNFIISMAFIFSLILSTNVFAESNVPEIKGEGMVLMDGTTGEVLAEKNA 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +E   PAS TK MT  +  E     K +LN  + + K       +++ L+E   +T E+ 
Sbjct: 61  NEKLAPASTTKTMTALLTVE-----KANLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEEL 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + AL+ +SAND + A  E ISGSE+KFA LM+ +A+++G +NT + NASGL + + +TT 
Sbjct: 116 LNALLIQSANDAAVALAEHISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRN-------RIITNHNKLLNK-----MHNIDG 239
            D A++     KN P   +      +               N+N+L+++       +I  
Sbjct: 176 YDLALIMNAASKN-PIIDEITKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFC 234

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTH 299
            KTGYT  S      + +  D  ++  ++G  T  +  +    L+    +  +L   + +
Sbjct: 235 NKTGYTTKSRHTFTCAAKRGDRKLILTLLGYDTKDQYYEDTKNLLDYGFDNFSLV--KLY 292

Query: 300 RKDNLSS---TSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
            K+++        K +L +   +  Y  FK  + +  ST
Sbjct: 293 SKNDVVKEYYIDDKNTLSLVVPEDIYKTFKNSEIENLST 331


>gi|168215748|ref|ZP_02641373.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens NCTC
           8239]
 gi|182382096|gb|EDT79575.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens NCTC
           8239]
          Length = 444

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 81/339 (23%), Positives = 156/339 (46%), Gaps = 26/339 (7%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSS--IVIDVNKNQMTGFKQ- 71
           ++  + ++ I+ N  +    +F  I+  ++ +E +         +++D    ++   K  
Sbjct: 1   MSIKFKNLKIRLNFIISMAFIFSLILSTNVFAESNVPEIKGEGMVLMDGTTGEVLAEKNA 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +E   PAS TK MT  +  E     K +LN  + + K       +++ L+E   +T E+ 
Sbjct: 61  NEKLAPASTTKTMTALLTVE-----KANLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEEL 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + AL+ +SAND + A  E ISGSE+KFA LM+ +A+++G +NT + NASGL + + +TT 
Sbjct: 116 LNALLIQSANDAAVALAEHISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRN-------RIITNHNKLLNK-----MHNIDG 239
            D A++     KN P   +      +               N+N+L+++       +I  
Sbjct: 176 YDLALIMNAASKN-PIIDEITKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFC 234

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTH 299
            KTGYT  S      + +  D  ++  ++G  T  +  +    L+    +  +L   + +
Sbjct: 235 NKTGYTTKSRHTFTCAAKRGDRKLILTLLGYDTKDQYYEDTKNLLDYGFDNFSLV--KLY 292

Query: 300 RKDNLSS---TSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
            K+++        K +L +   +  Y  FK  + +  ST
Sbjct: 293 SKNDVVKEYYIDDKNTLSLVVPEDIYKTFKNSEIENLST 331


>gi|110802740|ref|YP_699397.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens SM101]
 gi|110683241|gb|ABG86611.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens SM101]
          Length = 427

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 136/295 (46%), Gaps = 24/295 (8%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +++D    ++   K  +E   PAS TK MT  +  E     K +LN  + + K       
Sbjct: 28  VLMDGTTGEVLAEKNANEKLAPASTTKTMTALLTVE-----KANLNDIVTIGKNPPLAEG 82

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           +++ L+E   +T E+ + AL+ +SAND + A  E ISGSE +FA LM+ +A+++G +NT 
Sbjct: 83  TRVGLQEGDKYTVEELLNALLIQSANDAAVALAEHISGSEGEFAKLMNERAEELGAKNTH 142

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-------RIITNHN 228
           + NASGL + + +TT  D A++     KN P   +      +               N+N
Sbjct: 143 FVNASGLFEDDHMTTPYDLALIMNAASKN-PIIDEITKKTVYEMPKSIVSGEPIWANNNN 201

Query: 229 KLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           KL+++       +I   KTGYT  S      + +  D  ++  ++G  T  +  +    L
Sbjct: 202 KLIHQTSPYYNKDIFCNKTGYTTKSRHTFTCAAKRGDRKLILTLLGYDTKDQYYEDTKNL 261

Query: 284 ITSFLEKKTLKHQQTHRKDNLSS---TSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           +       +L   + + K+++        K +L +   +  Y  FK  + +  ST
Sbjct: 262 LDYGFNNFSLV--KLYSKNDVIKEYYIDDKNNLSLLAPEDIYKTFKNSEIENLST 314


>gi|260588887|ref|ZP_05854800.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
           20583]
 gi|260540666|gb|EEX21235.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
           20583]
          Length = 478

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 126/302 (41%), Gaps = 23/302 (7%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             ++IV+D++  ++   K  DE R PAS TK++T  +  E     K+   TQI  +    
Sbjct: 73  AETAIVMDMDTEEILYAKGIDEKRAPASTTKILTAMLAIE-----KVPFETQITFTDEVN 127

Query: 111 -ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 + + +K     T +    A++  SAN+VS+   E+I  +   F  +M+ +AK++
Sbjct: 128 NIEAGSTHIGIKPGETLTMKDCAYAILLASANEVSSGVAEYIGTTVPAFVDMMNQRAKEL 187

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQY----YKYFSIRKFRYRNRI 223
           G  NT + NA+GL+D+N  TTARD AI+     +N  F +     Y            R 
Sbjct: 188 GCTNTHFVNANGLYDENHYTTARDLAIIAKAAFQNETFREVVKTPYYIVPKTNITDEERW 247

Query: 224 ITNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           + NH+K++           G KTGYT  +G  +VT        +V  ++       +   
Sbjct: 248 LNNHHKMILQGSEYYEGCLGGKTGYTEKAGNTLVTYAERNGRKLVCALLADVNVVAQYTD 307

Query: 280 ALELITSFLEK-----KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
              L+            T       + D L     +K L+   L+ T     K   +  +
Sbjct: 308 TKALLDYGFNSFQRLDTTAVSLSPAKSDKLGKQLEEKGLLSTALETTSISVPKELTEELT 367

Query: 335 TQ 336
            +
Sbjct: 368 YK 369


>gi|228477772|ref|ZP_04062400.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus salivarius
           SK126]
 gi|228250464|gb|EEK09678.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus salivarius
           SK126]
          Length = 417

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 81/342 (23%), Positives = 146/342 (42%), Gaps = 36/342 (10%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRY-PASLTKMMT 85
           +M  ++ L +   ++A E       S+   I I+    ++   K        AS+TK++T
Sbjct: 10  IMIALILLGLATPALAQEQTDDFNVSAKHAIAIEATTGKVLYEKDATTPDGVASMTKILT 69

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
            Y++++ +   K+  +T++ +S            S + L  +  +T +Q + A +  SAN
Sbjct: 70  AYMVYKAVDQGKITWDTEVDISDYPFNLTVDSEVSNVPLDSR-KYTVKQLLDATLISSAN 128

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HDKNQ 187
             + A  E ISGSE  F   M+ + K+  + +    NASGL               D   
Sbjct: 129 SAAIALAEKISGSESAFVDAMTAQLKEWSITDAKLYNASGLNNKYLGDNRYPGSKPDDEN 188

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNHNKLL----NKMHNIDGIKT 242
             +A D AI+   L K++PQ  +     +  +  +  +T HN +L    N    +DG+KT
Sbjct: 189 SMSALDVAIIADHLIKDYPQVLEITKQTETDFEGDNKLTTHNYMLEGQDNYREGVDGLKT 248

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVM----GMPTSQERDQKALELI---TSFLEKKTLK- 294
           G T  +G + V         ++ VVM    G      R     EL+   T   E KTL  
Sbjct: 249 GTTELAGASFVAHSNENGMSLITVVMNADNGGEDEAARFTATNELLDYVTQNWEIKTLNT 308

Query: 295 HQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
             Q  +K+++      +  +  KL+   +  +KI++K  + +
Sbjct: 309 KGQIVKKNDIKVADGDRQTISAKLESDLTVIQKINSKNDAVK 350


>gi|312793435|ref|YP_004026358.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180575|gb|ADQ40745.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 451

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 78/321 (24%), Positives = 138/321 (42%), Gaps = 40/321 (12%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQ 71
           S ++++ +  +       +I+ +     +++            S+I+++ +  Q+   K 
Sbjct: 2   SQFLKKAVLYLTSSALFFVILFTYPFYTYSQQESNDKLGLSAKSAILVEAHTGQILFEKN 61

Query: 72  DEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP--SKLYLKEKTYFTT 128
              R +PAS TK++T  +      S +  L+    VS  A    P  S  YL      + 
Sbjct: 62  PNLRCFPASTTKVLTALVAI----SYEHDLSKIFKVSSKATMIEPGSSSYYLNPGETISF 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           +  + A++  SAND +    E I+GS  +F   M+  AK IG +N+ + N +GLH     
Sbjct: 118 QDLLYAMLLISANDAANVIAENIAGSIPEFVEKMNEYAKSIGAENSHFVNPNGLHSPQHY 177

Query: 189 TTARDQAILGILLRKNFPQYY-KYFSIRKFRYRN---------RIITNHNKLLNK----- 233
           TTA D +++     +N  +   K FS  ++R            +II N NKLL K     
Sbjct: 178 TTAYDLSLIARQAYQN--EILKKIFSTVEYRITTASMHKKPDWQIIYNINKLLRKNSQYY 235

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK--- 290
                GIKTGYT  +   ++ S +  D  ++AV++   +S++    A++L          
Sbjct: 236 YPYATGIKTGYTAQAKRCLIASAKKNDIELIAVIL---SSEDAFSDAIKLFDYGFNNFKR 292

Query: 291 -KTLKHQQTHRKDNLSSTSLK 310
            K     Q   K  +  T+ K
Sbjct: 293 EKLFSENQIVGKVLIDKTNQK 313


>gi|331083423|ref|ZP_08332535.1| hypothetical protein HMPREF0992_01459 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404116|gb|EGG83664.1| hypothetical protein HMPREF0992_01459 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 478

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 127/302 (42%), Gaps = 23/302 (7%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             ++IV+D++  ++   K  DE R PAS TK++T  +  E     K+   TQI  +    
Sbjct: 73  AETAIVMDMDTEEILYAKGIDEKRAPASTTKILTAMLAIE-----KVPFETQITFTDEVN 127

Query: 111 -ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 + + +K     T +    A++  SAN+VS+   E+I  +   F  +M+ +AK++
Sbjct: 128 NIEAGSTHIGIKPGETLTMKDCAYAILLASANEVSSGVAEYIGTTVPAFVDMMNQRAKEL 187

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQY----YKYFSIRKFRYRNRI 223
           G  NT + NA+GL+D+N  TTARD AI+     +N  F +     Y            R 
Sbjct: 188 GCTNTHFVNANGLYDENHYTTARDLAIIAKAAFQNETFREVVKTPYYIVPKTNITDEERW 247

Query: 224 ITNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           + NH+K++           G KTGYT  +G  +VT        +V  ++       +   
Sbjct: 248 LNNHHKMILQGSEYYEGCLGGKTGYTEKAGNTLVTYAERNGRKLVCALLADVNVVAQYTD 307

Query: 280 ALELITSFLEK-----KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
              L+    +       T       + D L     +K L+   L+ T     K   +  +
Sbjct: 308 TKALLDYGFDSFQRLDTTAVSLSPAKSDKLGKQLEEKGLLSTALETTSISVPKELTEELT 367

Query: 335 TQ 336
            +
Sbjct: 368 YK 369


>gi|266622661|ref|ZP_06115596.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
 gi|288865598|gb|EFC97896.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
          Length = 480

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 71/319 (22%), Positives = 134/319 (42%), Gaps = 38/319 (11%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSS---------IVIDVNKNQMTGFKQ-DEPRYPAS 79
            + KIL  ++I        +A P + +         +VID++   + G K  D P  PAS
Sbjct: 4   FLKKILCWTLISNCFLMTAYAAPAWPAGPDIQAEAGVVIDMDSGAILGGKAYDTPYPPAS 63

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGILAL 135
           +TK++T  ++ E+ +     L+  +  S +A     + + +KL + E    + E  + +L
Sbjct: 64  ITKLLTALLVLEHSK-----LDEMVTFSNSAVYNVESDSGNKLNVAEGDQLSVEDCLYSL 118

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S N  + A  E ++GS++ F  +M++KA  +G +++ + N SGL+   Q  TARD A
Sbjct: 119 LVHSCNQAANALAEHVAGSQEAFVKMMNDKAAALGCKDSHFDNPSGLNGDTQYVTARDMA 178

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYR-------NRIITNHNKLL---------NKMHNIDG 239
            +        P   +  +  K  +           I   NKL+              + G
Sbjct: 179 AISRAAFAE-PDIIRISAALKHTFPPTINNPEGLTIYAENKLILNTNDSSSQYYYPPVKG 237

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVM-GMPTSQERDQKA-LELITSFLEKKTLKHQQ 297
            KTGY   +G  +VT        +++V++ G P     D KA LE          +   +
Sbjct: 238 GKTGYLLKAGNTLVTYAEKDGKRLISVILKGSPGQYYLDGKALLEFGFEHFTNYNVAENE 297

Query: 298 THRKDNLSSTSLKKSLMIK 316
           +   +  ++  +     + 
Sbjct: 298 SAYTEGEAAVDVGGKSYLP 316


>gi|281357416|ref|ZP_06243904.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Victivallis
           vadensis ATCC BAA-548]
 gi|281316019|gb|EFB00045.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Victivallis
           vadensis ATCC BAA-548]
          Length = 391

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 68/261 (26%), Positives = 127/261 (48%), Gaps = 12/261 (4%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKK-LH 99
           +  +  + +    S I++D+    +   K        AS+ KMMTL + FE L+    + 
Sbjct: 128 LPASQVVGSAGATSGIMVDLTTRNVLWEKNSTAKVPIASMVKMMTLLVTFEELEKNPAIS 187

Query: 100 LNTQIPVSKTAATQNPSKL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
           L + + ++KTA     + + +L  +  F     + A+  +SAND +    EFI G    F
Sbjct: 188 LESPVQITKTALAVPRTGVVWLDPRETFPLSDLLKAVTIKSANDAAVQVAEFIGGDVDSF 247

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDK---NQITTARDQAILGILLRKNFPQYYKYFSIR 215
              M+ +A+ +GM N+ + +  GL DK   N ++ ARD  +L   L + +P   ++ + +
Sbjct: 248 VNRMNLRAQTLGMTNSHFVSPCGLPDKKKGNSLSCARDMVVLAEQLLE-YPDVMRWSTTK 306

Query: 216 KFRYR----NRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +   R      ++T  NKL+N +   +DG+KTG+   SG+ +  S+      IV  V G 
Sbjct: 307 QDFIREGEKKTMLTTTNKLVNPRWPGVDGLKTGFINASGYCLTFSVLRDGRRIVGCVTGF 366

Query: 271 PTSQERDQKALELITSFLEKK 291
            ++++RD+ + +LI     + 
Sbjct: 367 KSARDRDRFSRKLIDWGYARA 387


>gi|302386883|ref|YP_003822705.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           saccharolyticum WM1]
 gi|302197511|gb|ADL05082.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           saccharolyticum WM1]
          Length = 431

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 73/272 (26%), Positives = 119/272 (43%), Gaps = 23/272 (8%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
            ++++D +   +   K  D   YPAS+TK+MT  ++ E     K  L   +  SK A T 
Sbjct: 96  GAVLMDASTGTLLYSKNGDTRYYPASITKLMTALLVAE-----KCSLPDTVTFSKAATTN 150

Query: 114 NPS---KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             S    L L E    T EQ +  L+ +SAN+V+    E +SGS   F+ LM+ +AK++G
Sbjct: 151 LESGAVTLGLSEGDKLTVEQCLYGLMLKSANEVANGLAEHVSGSISAFSALMNVRAKELG 210

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------NRII 224
              T + N +GL+     TTA D A++     +N     K  S   ++         R +
Sbjct: 211 CTGTNFVNPNGLNSSGHYTTAHDMALIARAAFQN-ETVKKVTSTLSYQIPATKNASARTV 269

Query: 225 TNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           +  +K+L          + G KTGYT  +G  +VT +      ++AV+M   ++   D K
Sbjct: 270 SMGHKMLYPGDSRYYPGVIGGKTGYTSLAGNTLVTCVEKNGIRLIAVIMKSKSTHYADTK 329

Query: 280 ALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
           +  L+      K    Q      +       K
Sbjct: 330 S--LLDYGFALKAAGGQGIQTSSSGWIQEGSK 359


>gi|167400236|ref|ZP_02305749.1| penicillin-binding protein 6 (D-alanyl-D-alaninecarboxypeptidase
           fraction C) (DD-peptidase) (DD-carboxypeptidase) (PBP-6)
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167050185|gb|EDR61593.1| penicillin-binding protein 6 (D-alanyl-D-alaninecarboxypeptidase
           fraction C) (DD-peptidase) (DD-carboxypeptidase) (PBP-6)
           [Yersinia pestis biovar Antiqua str. UG05-0454]
          Length = 231

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 57/196 (29%), Positives = 100/196 (51%), Gaps = 10/196 (5%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLN 101
             A ++ AK   + +++D N  ++      + R  PASLTK+M+ Y+I + +++ K+  +
Sbjct: 32  PAAPQIDAK---AYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPD 88

Query: 102 TQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
             + V K A        +  S ++LK             ++ +S ND S A  ++++GS+
Sbjct: 89  DLVTVGKDAWATGNPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQ 148

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             F  LM+N AK +G+ NT +    GL    Q +TARD A+LG  L ++ P+ Y     +
Sbjct: 149 DSFVGLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEK 208

Query: 216 KFRYRNRIITNHNKLL 231
           +F +     TN N+LL
Sbjct: 209 EFTFNKIRQTNRNRLL 224


>gi|197117367|ref|YP_002137794.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Geobacter
           bemidjiensis Bem]
 gi|197086727|gb|ACH37998.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase, S11 family
           [Geobacter bemidjiensis Bem]
          Length = 287

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 69/263 (26%), Positives = 118/263 (44%), Gaps = 15/263 (5%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYP 77
                  R + L   ILF ++     AS     P  S+ +I VN       +     R P
Sbjct: 1   MKKFSSLRVLTLTAGILFAAVCYADAASSPFVHPP-SAYLIQVN-GHTYKERNAHIRRPP 58

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT  I+ E     +  L+  + VS+ AA +  S++ L+     T    + A + 
Sbjct: 59  ASLTKIMTALIVME-----RCKLDEVVVVSRGAARETGSRIGLRRGERLTVRDLLAATLM 113

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            SAND   A  +   G+++ F + M+ +A+ + +QNT + NA G  +    TTA D A+L
Sbjct: 114 ASANDACRALADHACGNQRDFVVQMNARARALQLQNTRFTNACGHDNAGLYTTAHDLALL 173

Query: 198 GILLRKNFPQYYKYFSIRKFRYRN------RIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
                +  P + +  + ++ R R         + N N+L+ +     G+KTG T N+G  
Sbjct: 174 TEKAMQK-PYFAELVARKEMRIRTLNSKRSYYLRNKNRLIGRYPGAIGVKTGTTPNAGQC 232

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQ 274
           +V     ++  ++ V+M      
Sbjct: 233 LVAIAEREERKVLLVIMHARNRW 255


>gi|317126753|ref|YP_004093035.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           cellulosilyticus DSM 2522]
 gi|315471701|gb|ADU28304.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           cellulosilyticus DSM 2522]
          Length = 479

 Score =  215 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 67/336 (19%), Positives = 133/336 (39%), Gaps = 65/336 (19%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKY----SSIVIDVNKNQMTGFKQ-DEPRY 76
           + ++R   +   I+F    +++  +   A  +     + I++D +  ++   +  D+P  
Sbjct: 1   MLLKRMGMIGLLIIFTFTSLLTGVTTTKADYESDLLETGILVDADTGKILYGRNIDQPLP 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-----NPSKLYLKEKTYFTTEQG 131
           PAS+ KMM++Y+I E ++   +  +  + ++           N S + L++   +T  + 
Sbjct: 61  PASMVKMMSIYLIHESIEKGDISWDDIVYINDYLVNDLSKQINLSNVPLRKDEDYTVREL 120

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT----------------- 174
             ++   SAN    A  E I+GSE  F  +M+ K K++GM N                  
Sbjct: 121 YESIAIYSANASMMAVAEHIAGSEGSFVEMMNEKGKELGMGNLLREEGEKHGISNLNEIA 180

Query: 175 -------IYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFS 213
                   + N++GL               D +   +AR  A L   L  ++P+  +  S
Sbjct: 181 EANLGDFQFVNSTGLPNSVLLENRPSGTEIDDDNFMSARATATLAYHLLNDYPEVLETAS 240

Query: 214 IRKFRYRN-----RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           I +  ++       ++ N NK+L          DG+KTG T  +G     +       ++
Sbjct: 241 IPEMTFKEGTEDAIVMPNWNKMLEGRGHFYEYADGLKTGTTTAAGACFTGTAVKNGRRLI 300

Query: 265 AVVMGMP--------TSQERDQKALELITSFLEKKT 292
            VVMG+P            R  +  +L+       +
Sbjct: 301 TVVMGLPRPLTSRPEDDLARYDETRKLMEYGFNNFS 336


>gi|306825360|ref|ZP_07458700.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304432298|gb|EFM35274.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 411

 Score =  215 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 74/341 (21%), Positives = 147/341 (43%), Gaps = 32/341 (9%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
           + I L    LF+   + +++++        +I ++    ++   K  ++P   AS+TK++
Sbjct: 2   KKIILSFITLFVFGTVSTVSAQEFDVAAKHAIAVEATTGKILYEKDANQPVEIASITKLV 61

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           T+Y+++E L+   + L+T + +S            S + ++ + Y T EQ + A +  SA
Sbjct: 62  TVYLVYEALEQGTISLSTPVDISDYPYKLTTNSEASNVPMEARNY-TVEQLLEATMVSSA 120

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKN 186
           N  + A  E I+GSEK F   M  K  + G+Q+    N +GL+              D  
Sbjct: 121 NSAAIALAEKIAGSEKDFVDKMRAKLLEWGIQDATIVNTTGLNNETLGDNIYPGSKKDDE 180

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIKT 242
              +A D AI+   L +++PQ  +        +    I + N +L  M      +DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIRDYPQVLEITKKPTSTFAGLEIHSTNYMLEGMPAYRGGVDGLKT 240

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELIT----SFLEKKTLK 294
           G T  +G + V +   K   I+ VV+           R      L+     +F  K  ++
Sbjct: 241 GTTDKAGASFVGTTVEKGMRIITVVLNADQQDSNPYARFTATSSLLDYVSANFALKTVVQ 300

Query: 295 HQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
             +T++   ++    K+  +    K   +  +++ ++  S 
Sbjct: 301 KGETYKDSKVTVLDGKEDKVAAIAKSDIAIVQRVGSETTSA 341


>gi|218506880|ref|ZP_03504758.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli Brasil
           5]
          Length = 247

 Score =  215 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 82/205 (40%), Positives = 130/205 (63%)

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + FE L+  K+  +T I +SK AA + P+KL +K     T  + +  +I +SAND + A 
Sbjct: 1   LTFEALKRGKIDWDTPIRMSKYAAARPPTKLGVKAGGTITVREAVYGMIVKSANDAAAAM 60

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E + GSE  FA +M+ KA+++GM  T++ NASGL + +Q+TTARD + LG+ L KN+P 
Sbjct: 61  AETLGGSESGFAWMMTAKARQLGMSRTVFVNASGLPNPSQVTTARDMSTLGVALMKNYPN 120

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            Y+ FS+  F +R + +  HN L+ +   +DGIKTGYT  SGFN+V+++R  +  +V VV
Sbjct: 121 EYRLFSMASFNFRGKTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVVGVV 180

Query: 268 MGMPTSQERDQKALELITSFLEKKT 292
           +G  T++ RD K   L+  +L + +
Sbjct: 181 LGGRTARSRDAKMAGLLDRYLGRAS 205


>gi|167813984|ref|ZP_02445664.1| penicillin-binding protein 6 [Burkholderia pseudomallei 91]
          Length = 306

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 121/247 (48%), Gaps = 20/247 (8%)

Query: 104 IPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
           +  S+      ++ S+++++     +    +  +I +S ND + A  E + GSE +F  +
Sbjct: 1   VTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNM 60

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           M+ +A+++GM+NT + + +G+ D N  TTA D A L   L +++P YY  FS+++F Y N
Sbjct: 61  MNAEAQRLGMKNTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNN 120

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-------KDDPIVAVVMGMPTSQ 274
               N N+LL     +DG+KTG+T+ +G+ ++ S +            +V V+MG     
Sbjct: 121 IKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKES 180

Query: 275 ERDQKALELI----TSFLEKKTLKHQQT-------HRKDNLSSTSLKKSLMIKKLKRTYS 323
           +R Q +++++    T+F   +  K  Q          K N     +KK   I   +    
Sbjct: 181 DRVQDSMKMLNYGYTAFDSVRLYKASQPIDTPRVYKGKSNNVQVGVKKDQFITVPRGLAD 240

Query: 324 QFKKIDA 330
           + K   A
Sbjct: 241 KVKPEVA 247


>gi|228951945|ref|ZP_04114043.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229069121|ref|ZP_04202413.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
 gi|229078751|ref|ZP_04211305.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
 gi|229177976|ref|ZP_04305348.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
 gi|228605464|gb|EEK62913.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
 gi|228704624|gb|EEL57056.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
 gi|228714066|gb|EEL65949.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
 gi|228807868|gb|EEM54389.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 363

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 131/284 (46%), Gaps = 17/284 (5%)

Query: 34  ILFLSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFE 91
           +++ S++ I   +++++     ++++++    ++   K + EP+  AS+TK+MT  +  E
Sbjct: 1   MMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAE 60

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
             +     +   + VS  A     S +YLK       E  +  L+ RS ND +    E +
Sbjct: 61  SGK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESV 115

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRKNFPQYYK 210
            GS   F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L      N   + K
Sbjct: 116 GGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGN-ETFKK 174

Query: 211 YFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+       ++ V 
Sbjct: 175 IFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVT 234

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
           +   +  +     + L     E+   K  +   +  ++  + KK
Sbjct: 235 LSASSDWD---DHMNLFDKGFER--FKQTKVLGQGAIAEINEKK 273


>gi|320547987|ref|ZP_08042268.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus equinus
           ATCC 9812]
 gi|320447333|gb|EFW88095.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus equinus
           ATCC 9812]
          Length = 419

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 76/335 (22%), Positives = 142/335 (42%), Gaps = 33/335 (9%)

Query: 14  FLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE 73
            L +      +++ I  +   + L+ I  S+ ++        +I ++    ++   K   
Sbjct: 1   MLNFLTKDGTMKKVIAALA--ILLAFIGSSVYADDFDVAAKHAIAVEATTGKVLYEKDAT 58

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTT 128
            P   AS+TK++T+Y+ ++ + +  L  +T++P+S  A    A  + S + ++   Y T 
Sbjct: 59  TPAGIASMTKILTVYLTYKEIDNGNLSWDTKVPISDYAYDLTANSDASNVPMEAHEY-TV 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD---- 184
           EQ + A +  SAN  + A  E I GSE  F  +M  +  + G+ +    NASGL++    
Sbjct: 118 EQLVNAAMVASANSAAIALAEQIGGSESNFVDMMKAQLNEWGITDAKLVNASGLNNSYLS 177

Query: 185 ----------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
                        + +ARD AI+   L   +P   K  S     +    +  +N +L  M
Sbjct: 178 DNIYPESSSTDENMLSARDIAIIARHLITEYPDVLKISSQTTADFDGSTMNTYNYMLKDM 237

Query: 235 H----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE----RDQKALELIT- 285
                 +DG+KTG T  +G + V +       I++VVM     +E    R +   EL+  
Sbjct: 238 PYERDGVDGLKTGTTELAGASFVATSTENGMRIISVVMNADGWEENDFARFEATNELLDY 297

Query: 286 --SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKL 318
             S  E  T+       K++ +     K   +  +
Sbjct: 298 VKSNYEITTIIEAGQSYKNSKAKVKDGKEKTVPVV 332


>gi|171910636|ref|ZP_02926106.1| D-alanyl-D-alanine carboxypeptidase [Verrucomicrobium spinosum DSM
           4136]
          Length = 373

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 117/248 (47%), Gaps = 16/248 (6%)

Query: 51  KPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
            PK  +   IV+D    ++   K  + + P AS  K++T  ++ E       +L+  + V
Sbjct: 132 APKVQAERVIVVDAGTGEVLFEKNADRKAPVASTQKLLTALLLTE-----DGNLDQILTV 186

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
                   P +L +K    +   Q + AL+ +S+ND++ A     +G+  +F   M+ +A
Sbjct: 187 EPDDTKCAPVRLGIKAGEQYPRRQLLTALLVKSSNDIAQALARDNAGTMDEFVKKMNARA 246

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN----- 221
            ++GM++T + N  GL    Q +TARD A +  L     P   +  S + F ++      
Sbjct: 247 AELGMKDTRFLNPHGLPADGQYSTARDMARVA-LTVDAVPDIRRMISTKSFVFKKNDGSW 305

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
             + N N++L      DG+KTGY + +G+ +++S    +   + VV+   TSQ   + + 
Sbjct: 306 INLENTNRVLRNYAFCDGMKTGYAQAAGYCLISSGEKDNHRRIVVVL-SDTSQAVWKDSQ 364

Query: 282 ELITSFLE 289
            L+   L+
Sbjct: 365 SLLEWSLK 372


>gi|110800833|ref|YP_696799.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens ATCC
           13124]
 gi|168208823|ref|ZP_02634448.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens B str.
           ATCC 3626]
 gi|110675480|gb|ABG84467.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens ATCC
           13124]
 gi|170713162|gb|EDT25344.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens B str.
           ATCC 3626]
          Length = 444

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 81/339 (23%), Positives = 157/339 (46%), Gaps = 26/339 (7%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSS--IVIDVNKNQMTGFKQ- 71
           ++  + ++ I+ N  +    +F  I+  ++ +E +         +++D    ++   K  
Sbjct: 1   MSIKFKNLKIKLNFIISMAFIFSLILSTNVFAESNVPEIKGEGMVLMDGTTGEVLAEKNA 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +E   PAS TK MT  +  E     K +LN  + + K       +++ L+E   +T E+ 
Sbjct: 61  NEKLAPASTTKTMTALLTVE-----KANLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEEL 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + AL+ +SAND + A  E ISGSE+KFA LM+ +A+++G +NT + NASGL + + +TT 
Sbjct: 116 LNALLIQSANDAAVALAEHISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRN-------RIITNHNKLLNK-----MHNIDG 239
            D A++  +  KN P   +      +               N+N+L+++       +I  
Sbjct: 176 YDLALIMNVASKN-PIIDEITKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFC 234

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTH 299
            KTGYT  S      + +  D  ++  ++G  T  +  +    L+    +  +L   + +
Sbjct: 235 NKTGYTTKSRHTFTCAAKRGDRKLILTLLGYDTKDQYYEDTKNLLDYGFDNFSLV--KLY 292

Query: 300 RKDNLSS---TSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
            K+++        K +L +   +  Y  FK  + +  ST
Sbjct: 293 SKNDVVKEYYIDDKNTLSLVVPEDIYKTFKNSEIENLST 331


>gi|134299463|ref|YP_001112959.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
           MI-1]
 gi|134052163|gb|ABO50134.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
           MI-1]
          Length = 388

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 68/261 (26%), Positives = 115/261 (44%), Gaps = 32/261 (12%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++ +++V   ++   K  D+ R PASLTK+MT  +  E     K +L   + V + AA
Sbjct: 37  ASAASLMEVESGKVYFEKDGDKRREPASLTKVMTAILAIE-----KGNLKDVVTVQQRAA 91

Query: 112 TQN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             +    + L        E  + A +  SAND + A GE I GS  +F  +M+ KA  +G
Sbjct: 92  RVSMGQDIGLNIGDRLYLEDLLKAALMYSANDSTVAIGEHIGGSHDQFVKMMNEKAVALG 151

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----------- 219
           ++NT + N +G H  N  TTA D A L     +N   + ++   ++              
Sbjct: 152 LKNTHFANTNGFHHPNHYTTANDLAKLTCYALQN-KTFAEFVRTKEATITWLPKETAVKT 210

Query: 220 ---------RNRIITNHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
                    + R++ N N+LL      I+G+KTG T  +G  ++ S   +   +V V++ 
Sbjct: 211 GKKSEAETVKQRVLRNTNRLLRSDFEGINGVKTGTTPRAGNCLIASATREGRQLVVVIL- 269

Query: 270 MPTSQERDQKALELITSFLEK 290
              S  R   A  L+     +
Sbjct: 270 --HSNNRWNDATRLLEYGFNE 288


>gi|325292852|ref|YP_004278716.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3]
 gi|325060705|gb|ADY64396.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3]
          Length = 390

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 66/264 (25%), Positives = 120/264 (45%), Gaps = 12/264 (4%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           +  +   AK + + + ID     +   +  ++   PASL K+MT+ +I + L   ++   
Sbjct: 30  TQTAPFIAKAEQAYM-IDAETGTVLLSQNENQSFPPASLAKLMTVEVILDALAKGQVTPE 88

Query: 102 TQIPVSKTAATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           T  PVS+ A          S ++   K+  +    +  +I ++AND      E ++GS+ 
Sbjct: 89  TAYPVSEYAWRTGGAPSRTSTMFAALKSSVSVNDLLTGIIVQNANDGCIIVAEGMAGSDS 148

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            FA  M+ +A ++GM  +++ N++GL D    TTA+D  +L   LR  +P  Y  F+   
Sbjct: 149 AFAKRMTVRAGELGMNRSVFANSTGLPDPGNQTTAKDMVLLAQHLRDTYPDRYGLFTKPD 208

Query: 217 FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           F +      N N LL   + IDG+  G+   SGF  V S   +   +   +  +   + R
Sbjct: 209 FEWNRIFQRNKNSLLG--NGIDGLGLGFAEGSGFAAVVSAEREGRRVYLALGSIADDKTR 266

Query: 277 DQKALELITSF---LEKKTLKHQQ 297
             +A  ++       EK+ L  + 
Sbjct: 267 QDEARRVVDWGLTAFEKRHLFAKD 290


>gi|229189650|ref|ZP_04316665.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
 gi|228593914|gb|EEK51718.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
          Length = 363

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 131/284 (46%), Gaps = 17/284 (5%)

Query: 34  ILFLSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFE 91
           +++ S++ I   +++++     ++++++    ++   K + EP+  AS+TK+MT  +  E
Sbjct: 1   MMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAE 60

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
             +     +   + VS  A     S +YLK       E  +  L+ RS ND +    E +
Sbjct: 61  SGK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESV 115

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRKNFPQYYK 210
            GS   F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L      N   + K
Sbjct: 116 GGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGN-ETFKK 174

Query: 211 YFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+       ++ V 
Sbjct: 175 IFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVT 234

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
           +   +  +     + L     E+   K  +   +  ++  + KK
Sbjct: 235 LSASSDWD---DHMNLFDKGFER--FKQTKVLGQGAIAEINEKK 273


>gi|30261566|ref|NP_843943.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Ames]
 gi|47777937|ref|YP_018113.2| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49184396|ref|YP_027648.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Sterne]
 gi|170706241|ref|ZP_02896702.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0389]
 gi|229603016|ref|YP_002865975.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0248]
 gi|30255420|gb|AAP25429.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
           Ames]
 gi|47551642|gb|AAT30588.2| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49178323|gb|AAT53699.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Sterne]
 gi|170128775|gb|EDS97641.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0389]
 gi|229267424|gb|ACQ49061.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0248]
          Length = 374

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 71/326 (21%), Positives = 140/326 (42%), Gaps = 27/326 (8%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +L +   ++ + +        S+   ++++ +  ++   K + EP+  AS+T
Sbjct: 2   RRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASIT 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +  ++ VS  A     S +YLK       E  +  L+ RS N
Sbjct: 62  KIMTALLAAESGK-----MKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGN 116

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS + F  LM+ KAK+I M++T + N  GL  D +  ++A D A+L   
Sbjct: 117 DAAQVIAENVGGSIEGFVYLMNEKAKQIRMKDTHFSNPHGLDGDGSHYSSAYDMALLTRY 176

Query: 201 LRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLR 257
              N   + + F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+  
Sbjct: 177 AMGN-ETFKEIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 235

Query: 258 YKDDPIVAVVMGMPTSQ-----------ERDQKALELITSFLEKKTLKHQQ--THRKDNL 304
                ++ V +   +             +R ++   L    L + T K      + K++ 
Sbjct: 236 KDGLDLIVVTLSASSDWDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYTKNSF 295

Query: 305 SSTSLKKSLMIKKLKRTYSQFKKIDA 330
           S    ++      LK    +  K+  
Sbjct: 296 SVPLTEEEKKSVVLKVELDKSAKLVD 321


>gi|116627039|ref|YP_819658.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein
           [Streptococcus thermophilus LMD-9]
 gi|116100316|gb|ABJ65462.1| D,D-carboxypeptidase PBP3. Serine peptidase. MEROPS family S11
           [Streptococcus thermophilus LMD-9]
 gi|312277502|gb|ADQ62159.1| D,D-carboxypeptidase PBP3 [Streptococcus thermophilus ND03]
          Length = 417

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 80/343 (23%), Positives = 150/343 (43%), Gaps = 41/343 (11%)

Query: 34  ILFLSIIMISMASELHAK--------PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMM 84
           I+ +++I+I +A+   A+            +I I+    ++   K        AS+TK++
Sbjct: 9   IIMIALILIGLATPALAQDQTDSFNVAAKHAIAIETTTGKVLYEKDATTPDGVASMTKIL 68

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           T Y++++ +   K+  +T++ +S            S + L  +  +T +Q + A +  SA
Sbjct: 69  TAYMVYKAVDQGKITWDTEVGISDYPFNLTVDSEVSNVPLDSR-KYTVKQLLDATLISSA 127

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HDKN 186
           N  + A  E ISG+E  F   M+ + K+ G+ +    NASGL               D  
Sbjct: 128 NSAAIALAEKISGTESTFVDTMTAQLKEWGITDAKLFNASGLNNKYLGDNRYPGSKPDDE 187

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNHNKLL----NKMHNIDGIK 241
              +A D AI+   L K++PQ  +     +  +  +  +T HN +L    N    +DG+K
Sbjct: 188 NTMSALDIAIIADHLIKDYPQVLEITKQTEVDFEGDNKLTTHNYMLEGQENYREGVDGLK 247

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVM----GMPTSQERDQKALELI---TSFLEKKTLK 294
           TG T  +G + V         ++ VVM    G      R     EL+   T   E KTL 
Sbjct: 248 TGTTELAGASFVAHSNENGMSLITVVMNAYNGGDDESARFTATNELLDYVTQNWEIKTLN 307

Query: 295 -HQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
            + Q  +K+++      +  +  +L+   +  +KI+++  S +
Sbjct: 308 TNGQIVKKNDIKVADGDRKTISARLESDLTVVQKINSRNDSVK 350


>gi|218288835|ref|ZP_03493086.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240924|gb|EED08101.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 289

 Score =  215 bits (548), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 76/263 (28%), Positives = 130/263 (49%), Gaps = 13/263 (4%)

Query: 32  GKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIF 90
                L+    + A+   A    +++V D    ++   K  DEP YPAS TK+MT  ++ 
Sbjct: 22  AMFAVLAPWAQAEATRPPAVNAKAAVVYDATNRKVLYDKRGDEPMYPASTTKLMTAILLV 81

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           ++LQ      +  + +S+TA+ Q   +L L+  T  T EQ +LALI +SANDV+    E 
Sbjct: 82  QHLQP-----DDPVYISETASRQPRVRLGLRPGTELTAEQALLALIMKSANDVAYGIAET 136

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           I GS++ FA +M+ +A+ IG  +T +   +GLH     T+A+D A++       +P+  +
Sbjct: 137 IGGSQEGFARMMNVEARLIGCTHTQFVTPNGLHADAHTTSAKDIALITAKAI-TYPRIVR 195

Query: 211 YFSIRKFRYRNRIITNHNKLLNKMH----NIDGIKTGYTRNSGFNIVTSLRY--KDDPIV 264
                +     + I N N+LL           G KTG+T  + + + T++R       +V
Sbjct: 196 AMQTPQATIAGKTIRNGNRLLYSPPASIGEFIGGKTGFTSRAMYCLATAVRRPSDGHVLV 255

Query: 265 AVVMGMPTSQERDQKALELITSF 287
           +VV G P      ++ + L+T  
Sbjct: 256 SVVFGAPRKSLMYRETVRLLTWA 278


>gi|228900148|ref|ZP_04064381.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           4222]
 gi|228859554|gb|EEN03981.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           4222]
          Length = 362

 Score =  215 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 66/283 (23%), Positives = 130/283 (45%), Gaps = 17/283 (6%)

Query: 35  LFLSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEY 92
           ++ S++ I   +++++     ++++++    ++   K + EP+  AS+TK+MT  +  E 
Sbjct: 1   MYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAES 60

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
            +     +   + VS  A     S +YLK       E  +  L+ RS ND +    E + 
Sbjct: 61  GK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESVG 115

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRKNFPQYYKY 211
           GS   F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L      N   + K 
Sbjct: 116 GSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGN-ESFKKI 174

Query: 212 FSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+       ++ V +
Sbjct: 175 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 234

Query: 269 GMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
              +  +     + L     E+   K  +   +  ++  + KK
Sbjct: 235 SASSDWD---DHMNLFDKGFER--FKQTKVLGQGAIAEINEKK 272


>gi|229016825|ref|ZP_04173754.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273]
 gi|229023030|ref|ZP_04179546.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272]
 gi|228738278|gb|EEL88758.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272]
 gi|228744477|gb|EEL94550.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273]
          Length = 362

 Score =  215 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 130/283 (45%), Gaps = 17/283 (6%)

Query: 35  LFLSIIMISMASELHA-KPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEY 92
           ++ S++ I   ++L+      ++++++    ++   K + EP+  AS+TK+MT  +  E 
Sbjct: 1   MYASVMPIPTYAKLNGGVSARNAVLMEQQSGRVLYGKLEHEPQKIASITKIMTALLAAES 60

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
            + K+L     + VS  A     S +YLK       E  +  L+ RS ND +    E + 
Sbjct: 61  GKMKEL-----VSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVG 115

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRKNFPQYYKY 211
           GS + F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L      N   + K 
Sbjct: 116 GSIEGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGN-ETFKKI 174

Query: 212 FSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+       ++ V +
Sbjct: 175 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 234

Query: 269 GMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
              +  +     + L     E    K      +  L+  + KK
Sbjct: 235 SASSDWD---DHMNLFDKGFEH--FKQTTVLGQGALAEINEKK 272


>gi|108807033|ref|YP_650949.1| Serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pestis Antiqua]
 gi|108778946|gb|ABG13004.1| Serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pestis Antiqua]
          Length = 232

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 57/196 (29%), Positives = 100/196 (51%), Gaps = 10/196 (5%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLN 101
             A ++ AK   + +++D N  ++      + R  PASLTK+M+ Y+I + +++ K+  +
Sbjct: 33  PAAPQIDAK---AYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPD 89

Query: 102 TQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
             + V K A        +  S ++LK             ++ +S ND S A  ++++GS+
Sbjct: 90  DLVTVGKDAWATGNPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQ 149

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             F  LM+N AK +G+ NT +    GL    Q +TARD A+LG  L ++ P+ Y     +
Sbjct: 150 DSFVGLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEK 209

Query: 216 KFRYRNRIITNHNKLL 231
           +F +     TN N+LL
Sbjct: 210 EFTFNKIRQTNRNRLL 225


>gi|228920278|ref|ZP_04083626.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839477|gb|EEM84770.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 363

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 65/284 (22%), Positives = 131/284 (46%), Gaps = 17/284 (5%)

Query: 34  ILFLSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFE 91
           +++ S++ I   +++++     ++++++    ++   K + EP+  AS+TK+MT  +  +
Sbjct: 1   MMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAQ 60

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
             +     +   + VS  A     S +YLK       E  +  L+ RS ND +    E +
Sbjct: 61  SGK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESV 115

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRKNFPQYYK 210
            GS   F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L      N   + K
Sbjct: 116 GGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGN-ETFKK 174

Query: 211 YFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+       ++ V 
Sbjct: 175 IFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKGGLDLIVVT 234

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
           +   +  +     + L     E+   K  +   +  ++  + KK
Sbjct: 235 LSASSDWD---DHMNLFDKGFER--FKQTKVLGQGAIAEINEKK 273


>gi|331269468|ref|YP_004395960.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum
           BKT015925]
 gi|329126018|gb|AEB75963.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum
           BKT015925]
          Length = 381

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 81/326 (24%), Positives = 146/326 (44%), Gaps = 23/326 (7%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPK--------YSSIVIDVNKNQMTGFKQDEPRY 76
           +R + ++  I  L         +    PK         S+I ID     +   K  E   
Sbjct: 8   RRIVSIVLNICLLFNTAFVYNVQATTMPKNKSIYIDARSAIAIDSKTKCVLYEKNAEMLL 67

Query: 77  P-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           P AS TK+MT  +  +Y      +L+ +  VS  AA+   S++  K+      ++ +  L
Sbjct: 68  PIASTTKIMTTLVALKYG-----NLDDKFQVSAKAASIRGSQVGYKKGESVALKELLYGL 122

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + RS ND +    E +SGS +KF  LM+  A +IG  N+ +++  GL  +N  +TA D A
Sbjct: 123 MLRSGNDAAITIAEGLSGSVEKFCELMNEYAVEIGALNSHFESPHGLDSQNHYSTAYDLA 182

Query: 196 ILGILLRKN--FPQYYKYFSIRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
            +    ++N  F +      +    Y   R   N NK+L ++ N +G+KTGYT  +G  +
Sbjct: 183 RITAKAKENELFNKIVGVKDVEAKEYGFTRSYHNINKILYQIPNANGVKTGYTGGAGKCL 242

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQ------THRKDNLSS 306
           VTS++  DD I+ VV+      +   K  + +    + K +  +        ++ +   +
Sbjct: 243 VTSVKDHDDDIIIVVLNCTPRWKETGKIYKFVKENYDFKKIASKNQVVDNIVYKDNKKIN 302

Query: 307 TSLKKSLMIKKLKRTYSQFKKIDAKA 332
               K +++   K+ + +FK +  K 
Sbjct: 303 LISDKDIVVPVGKQEHCEFKVVKPKN 328


>gi|323490220|ref|ZP_08095437.1| D-alanyl-D-alanine carboxypeptidase [Planococcus donghaensis
           MPA1U2]
 gi|323396116|gb|EGA88945.1| D-alanyl-D-alanine carboxypeptidase [Planococcus donghaensis
           MPA1U2]
          Length = 452

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 72/305 (23%), Positives = 136/305 (44%), Gaps = 39/305 (12%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKP-----KYSSIVIDVNKNQMTGFKQDE-PRYPASL 80
           N  L+  +L + +I      +++A+        ++I++D    ++   K  E P   AS+
Sbjct: 12  NKGLLIALLAVFMITGITPQQVNAEESLTIMAEAAILVDAESGKILYEKNAEKPLGVASM 71

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYFTTEQGILALI 136
           TKMMT Y++FE ++  K+  + +  V+      +     S +  +E   +T ++   A+ 
Sbjct: 72  TKMMTEYLLFEAIEEGKVAWDQEYQVTDYTYRISQDMRLSNVPFREDGSYTIKEMYEAMA 131

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------------ 184
             SAN  +    E I+G+E +F  LM+ KAK++G++ T + N++GL +            
Sbjct: 132 IFSANAATIGIAETIAGTESEFVELMNEKAKEMGLEETTFVNSTGLSNSSLMGMHPEGTK 191

Query: 185 --KNQITTARDQAILGILLRKNFPQYYKYFSI-----RKFRYRNRIITNHNKLL----NK 233
                I  AR  A L  +L  ++P+  +   I     R+       + N N +L     +
Sbjct: 192 ETDENIMPARAVAKLTKILLDDYPEVLETTKIPLKMFREGTSDETRMENWNSMLPGLIYE 251

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM------GMPTSQERDQKALELITSF 287
              +DG+KTG T  +G++   + +  D   +AVVM      G  + + R      L    
Sbjct: 252 YEGVDGLKTGSTDFAGYSFAGTAKRDDTRFIAVVMGAVDSEGAGSYKARFDATRVLFDYG 311

Query: 288 LEKKT 292
            ++ T
Sbjct: 312 FDEFT 316


>gi|167746445|ref|ZP_02418572.1| hypothetical protein ANACAC_01155 [Anaerostipes caccae DSM 14662]
 gi|167653405|gb|EDR97534.1| hypothetical protein ANACAC_01155 [Anaerostipes caccae DSM 14662]
          Length = 383

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 122/285 (42%), Gaps = 23/285 (8%)

Query: 26  RNIQLMGKILFLSIIM---ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLT 81
           + I  +   LFL + +      A +       S+I++D    ++   K  + + P AS T
Sbjct: 2   KKIFCVIWSLFLCLQLGFHTVRADDTLKLYAKSAILMDAGSGRVLFDKSGKSKMPNASTT 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K++T   I ++      +L  +  VSK AA Q    L  +    +  +  +  L+  S N
Sbjct: 62  KILTCLYIIKHC-----NLEEEATVSKNAAAQPQVHLGARAGEKYKVKDLLYGLMLESYN 116

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKN--QITTARDQAIL 197
           D +    E  +GS + FA  ++ +A+  G ++T +   +GL   DKN    TTA D A++
Sbjct: 117 DCAVILAEHAAGSTENFAKKLNAEARSYGAKSTHFVTPNGLDRTDKNGIHSTTAYDLALI 176

Query: 198 GILLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
                KN  ++ +    +   +      R+    NHN LL+ M      KTG+T  +G+ 
Sbjct: 177 MKQCIKN-KEFLEITRAKSHSFHDASGKRSFTCNNHNALLSMMDGAVSGKTGFTSKAGYC 235

Query: 252 IVTSLRYKDDPIVAVVMGM---PTSQERDQKALELITSFLEKKTL 293
            V +++     ++AVV+     P    +      L+    +  + 
Sbjct: 236 YVGAVKKNGMTMIAVVLACGWPPHKTYKWSDVRTLVDYGAKNYSY 280


>gi|291522282|emb|CBK80575.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus catus GD/7]
          Length = 383

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 63/325 (19%), Positives = 129/325 (39%), Gaps = 35/325 (10%)

Query: 30  LMGKILFLSIIMISMASELHAKP------------KYSSIVIDVNKNQMTGFKQDEPRYP 77
           ++   +F ++ ++       A+               +++++D +  ++   K +   +P
Sbjct: 1   MVALGIFCTLFILIQNPAAAAETGQQEEKEKLSLNARAAVLMDADSGRILYGKNETMAFP 60

Query: 78  -ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS TK+MTL +  E+ +      +  +  S  A+     +L + E   +  E    A++
Sbjct: 61  MASTTKIMTLIVALEHNEP-----DQIVMASAGASAMPEVRLGVHEGERYRMEDLYYAMM 115

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN----QITTAR 192
             S ND +    E   GS + FA LM+ KA  +G   T +   +GL   +      +TA 
Sbjct: 116 LESFNDAAMMIAEGTVGSVENFAELMNEKAISLGCTQTYFITPNGLDAADEKGVHSSTAE 175

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLLNKMHNIDGIKTGYTR 246
           D A +      N   + K      + +      R+  + N N LL  M  +   KTGYT 
Sbjct: 176 DMAKIMRYAIDN-EDFLKITQTADYSFTDCDRKRSFEVHNKNVLLTMMDGVLSGKTGYTA 234

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGM---PTSQERDQKALELITSF---LEKKTLKHQQTHR 300
           ++G+  V +++  D   +A ++G    P    +      L+         +T+   +   
Sbjct: 235 DAGYCYVCAVKKDDRTFIAALLGSGWPPHKGYKWLDVQTLLDYGDKNYRYQTIDISKGVP 294

Query: 301 KDNLSSTSLKKSLMIKKLKRTYSQF 325
              +   + ++     + K+T  +F
Sbjct: 295 DRQVHVMNGEQDFATVRAKQTNYRF 319


>gi|229043310|ref|ZP_04191030.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
 gi|229144168|ref|ZP_04272582.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
 gi|228639176|gb|EEK95592.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
 gi|228726024|gb|EEL77261.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
          Length = 363

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 65/284 (22%), Positives = 131/284 (46%), Gaps = 17/284 (5%)

Query: 34  ILFLSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFE 91
           +++ S++ I   +++++     ++++++    ++   K + EP+  AS+TK+MT  +  E
Sbjct: 1   MMYASVMPIPTYAKINSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAE 60

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
             +     +   + VS  A     S +YLK       E  +  L+ RS ND +    E +
Sbjct: 61  SGK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESV 115

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRKNFPQYYK 210
            GS   F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L      N   + K
Sbjct: 116 GGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGN-ETFKK 174

Query: 211 YFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+       ++ V 
Sbjct: 175 IFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKGGLDLIVVT 234

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
           +   +  +     + L     ++   K  +   +  ++  + KK
Sbjct: 235 LSASSDWD---DHMNLFDKGFDR--FKQTKVLGQGAIAEINEKK 273


>gi|328947304|ref|YP_004364641.1| serine-type D-Ala-D-Ala carboxypeptidase [Treponema succinifaciens
           DSM 2489]
 gi|328447628|gb|AEB13344.1| Serine-type D-Ala-D-Ala carboxypeptidase [Treponema succinifaciens
           DSM 2489]
          Length = 479

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 133/299 (44%), Gaps = 31/299 (10%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+IV+D     +   K  D    PAS+TK++ +Y++FE +++ ++ L+  +P+   + 
Sbjct: 99  AESAIVVDFATGNILFEKNADVQIPPASMTKLVEMYVVFEAVENGEISLDDVVPLPPESW 158

Query: 112 TQN----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
            +N     S ++L E+   T  + +L L   S ND S A  +++ G+   F   M+   K
Sbjct: 159 ARNLPSDASIMFLDERQKVTLRELLLGLAIASGNDASIAVAKYVCGNMDSFVERMNQTVK 218

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP-QYYKYFSIRKFRYR------ 220
           K+G+  T +  +SG  +KN ITTA++ A       + FP    ++ S +  RY       
Sbjct: 219 KMGLVKTEFVESSGYSEKN-ITTAKEFAAFCRKYIERFPFAITEFHSQKVLRYPLAKNLP 277

Query: 221 -----------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
                        I  N NKLL  +   DG+KTG+   SGFN+  +        ++V M 
Sbjct: 278 RESAQKNGDSQAVIQYNTNKLLGSLDGCDGLKTGFIYESGFNLALTAERNGVRYISVTMK 337

Query: 270 MP---TSQE---RDQKALELITSFLEKKT-LKHQQTHRKDNLSSTSLKKSLMIKKLKRT 321
            P   ++Q    R +    L+     K +    +Q H      + S  KS+ +   K  
Sbjct: 338 GPGIGSAQGNIYRVKDGTNLMEYAFSKFSPYIAKQPHNFSVGVAGSSLKSVCLVPAKSE 396


>gi|325478993|gb|EGC82094.1| serine-type D-Ala-D-Ala carboxypeptidase [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 403

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 88/335 (26%), Positives = 151/335 (45%), Gaps = 25/335 (7%)

Query: 26  RNIQLMGKILFLSIIMISMASE------LHAKPKYSSIVI-DVNKNQMTGFKQ-DEPRYP 77
           R  +L   +     +  SMA        +      S+ +I +     +   K  DE R  
Sbjct: 4   RKFRLASLLSIFIFLFTSMAYAKGEGRIVGLDENVSAYLIGNEETGDIYYEKNADEVRPI 63

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILA 134
           ASLTK+MT Y++ + ++  K+ L+T +   K A    +   S L LKE   ++ E+ +  
Sbjct: 64  ASLTKLMTFYLVRDAIEEGKISLDTNVKADKRAEELTSWEYSSLGLKENETYSVEELLQG 123

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL---HDKNQITTA 191
           LI  S ND +    + +SGSE+ F   M+ KAK++G+++  Y NASG+    DK  +++A
Sbjct: 124 LIAVSGNDCAHLLAKAVSGSEEAFTKKMNEKAKELGLESQKYYNASGIDTEDDKENVSSA 183

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT--NHNKLLNKMHNIDGIKTGYTRNSG 249
           RD   L + L K +P    Y S+ +     + I   +   L N++  +DG+KTG T  +G
Sbjct: 184 RDLYKLSMDLVKKYPDILNYSSMDEVNIPGKGIKKDSTIPLKNEIDGVDGLKTGTTEKAG 243

Query: 250 FNIVTSLRY------KDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKH--QQTHRK 301
           + ++T+L         D   + VV+G      RD    +LI       + +         
Sbjct: 244 YCLITTLDMKELDGNDDFRCLGVVLGADEKDIRDSVMSDLIYYVSRYYSCEKVLDTNRSV 303

Query: 302 DNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
           +++   S K+  +        +   K D K  ST+
Sbjct: 304 ESVEEVSAKQGYIDLYPAEDLTIISK-DKKHVSTK 337


>gi|270292858|ref|ZP_06199069.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. M143]
 gi|270278837|gb|EFA24683.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. M143]
          Length = 414

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 141/331 (42%), Gaps = 33/331 (9%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           F + I    A +     K+ +I ++    ++   K  ++P   AS+TK++T+Y+++E L+
Sbjct: 14  FGTAIPTVSAQDFDVAAKH-AIAVEATTGKILYEKDANQPVEIASITKILTVYLVYEALE 72

Query: 95  SKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
              + L+T + +S            S + ++ +  +T EQ + A +  SAN  + A  E 
Sbjct: 73  QGTISLSTPVDISDYPYQLTTNSEASNVPMEAR-KYTVEQLLEATLVSSANSAAIALAEK 131

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAI 196
           I+GSEK F   M  K  + G+++    N +GL+              D+    +A D AI
Sbjct: 132 IAGSEKDFVDKMRAKLLEWGIKDATIVNTTGLNNETLGNNIYPGSKKDEENKLSAYDVAI 191

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIKTGYTRNSGFNI 252
           +   L +++PQ  +        +    I + N +L  M      +DG+KTG T  +G + 
Sbjct: 192 IARNLIRDYPQVLEITKKSSSTFAGMEIHSTNYMLEGMPAYRGGVDGLKTGTTDKAGASF 251

Query: 253 VTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTLK----HQQTHRKDNL 304
           V +   K   I+ VV+           R      L+        LK      + ++   +
Sbjct: 252 VGTTTEKGMRIITVVLNADQQNSNPYARFTATSSLLDYITSNYALKTIVQKGEAYKDSKV 311

Query: 305 SSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           S    K+  +    K   +  +++ ++A S+
Sbjct: 312 SVLDGKEDTVTAVAKSDVTVIQRLGSRASSS 342


>gi|296278518|pdb|3MFD|A Chain A, The Structure Of The Beta-Lactamase Superfamily Domain Of
           D- Alanine Carboxypeptidase From Bacillus Subtilis
 gi|296278519|pdb|3MFD|B Chain B, The Structure Of The Beta-Lactamase Superfamily Domain Of
           D- Alanine Carboxypeptidase From Bacillus Subtilis
          Length = 334

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 123/289 (42%), Gaps = 14/289 (4%)

Query: 53  KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I+ID    ++   K +   R  AS+TK+ T  +  E  +      +  + VS  A 
Sbjct: 9   AKSAIIIDGASGRVLYAKDEHQKRRIASITKIXTAVLAIESGKX-----DQTVTVSANAV 63

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S +YL E      +  +  L  RS ND + A  E + GS   F    + KA+++G 
Sbjct: 64  RTEGSAIYLTEGQKVKLKDLVYGLXLRSGNDAAVAIAEHVGGSLDGFVYXXNQKAEQLGX 123

Query: 172 QNTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR--IITNHN 228
           +NT ++N  GL D +N  +TA D AIL     K    Y K    + ++      +  N N
Sbjct: 124 KNTRFQNPHGLDDHENHYSTAYDXAILTKYAXK-LKDYQKISGTKIYKAETXESVWKNKN 182

Query: 229 KLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           KLL        G KTGYT+ +   +V++       ++AV +  P   +   K    +   
Sbjct: 183 KLLTXLYPYSTGGKTGYTKLAKRTLVSTASKDGIDLIAVTINDPNDWDDHXKXFNYVFEH 242

Query: 288 LEKKTLKHQQTHRKDNLSSTSLKKSLMIKK-LKRTYSQFKKIDAKAHST 335
            +   +  +    K  L  T  +    IK+ +    ++ +K + K ++T
Sbjct: 243 YQTYLIAKKGDIPK--LKGTFYESKAFIKRDITYLLTEEEKENVKINTT 289


>gi|229917441|ref|YP_002886087.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Exiguobacterium sp. AT1b]
 gi|229468870|gb|ACQ70642.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Exiguobacterium sp. AT1b]
          Length = 415

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 69/312 (22%), Positives = 137/312 (43%), Gaps = 22/312 (7%)

Query: 25  QRNIQLMGKILFL--SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLT 81
            R   ++  ++F+  +++  + ++        S++++DV   Q+   KQ++    PAS+T
Sbjct: 3   ARYFIILLTVVFVIQTMLPSAASAAAPKVDAASAMLVDVTTGQVLFAKQEDSMLQPASIT 62

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGILALIT 137
           K+MT ++  E +++ KL    +I  S  A         +++ L     +T ++   A + 
Sbjct: 63  KLMTAFLTREAIEAGKLSWTQEITPSDAALALTRKPGLARIPL-LNKPYTVKELYDAALI 121

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK------NQITTA 191
           RSAN+ +   GE +SGSE+ F   M+ +A ++GM  T + NASGL  +      + +T+A
Sbjct: 122 RSANEAAVTLGEAVSGSEEAFVKEMNRRADELGMTQTTFANASGLDSESAGLPGDNLTSA 181

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK----MHNIDGIKTGYTRN 247
           +D   L I     +P+                    N++L         + G KTG T  
Sbjct: 182 KDLMKLAIAYLTTYPEVLDVTKRAYVDVDGVRFDATNRMLANRDLAYPGMLGFKTGTTNE 241

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL----ITSFLEKKTLKHQQTHRKDN 303
           +G+  +         +++VV+G  + + R      L       F+    L+  +T  K  
Sbjct: 242 AGYCFIGVSTRDGRTVLSVVLGATSDEGRYAATKALHDYAYADFVMTPILRMGETISKMA 301

Query: 304 LSSTSLKKSLMI 315
             S   ++ + +
Sbjct: 302 TVSQGEEEQVAV 313


>gi|228964541|ref|ZP_04125651.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795141|gb|EEM42637.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 362

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 130/283 (45%), Gaps = 17/283 (6%)

Query: 35  LFLSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEY 92
           ++ S++ I   +++++     ++++++    ++   K + EP+  AS+TK+MT  +  E 
Sbjct: 1   MYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAES 60

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
            +     +   + VS  A     S +YLK       E  +  L+ RS ND +    E + 
Sbjct: 61  GK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESVG 115

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRKNFPQYYKY 211
           GS   F  LM+ KAKKIGM++T + N  GL  D +  ++A D A+L      N   + K 
Sbjct: 116 GSIDGFVYLMNEKAKKIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGN-ESFKKI 174

Query: 212 FSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+       ++ V +
Sbjct: 175 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 234

Query: 269 GMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
              +  +     + L     E+   K  +   +  ++  + KK
Sbjct: 235 SASSDWD---DHMNLFDKGFER--FKQTKVLGQGAIAEINEKK 272


>gi|254976092|ref|ZP_05272564.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
           penicillin-binding protein) [Clostridium difficile
           QCD-66c26]
 gi|255093481|ref|ZP_05322959.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
           penicillin-binding protein) [Clostridium difficile CIP
           107932]
 gi|255315225|ref|ZP_05356808.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
           penicillin-binding protein) [Clostridium difficile
           QCD-76w55]
 gi|255517894|ref|ZP_05385570.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
           penicillin-binding protein) [Clostridium difficile
           QCD-97b34]
 gi|255651009|ref|ZP_05397911.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
           penicillin-binding protein) [Clostridium difficile
           QCD-37x79]
 gi|260684078|ref|YP_003215363.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196]
 gi|260687737|ref|YP_003218871.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291]
 gi|260210241|emb|CBA64492.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
           penicillin-binding protein) [Clostridium difficile
           CD196]
 gi|260213754|emb|CBE05676.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
           penicillin-binding protein) [Clostridium difficile
           R20291]
          Length = 429

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 83/312 (26%), Positives = 133/312 (42%), Gaps = 34/312 (10%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           FL    IS A    A     ++++D    ++   K  +   YPAS TK+ T  ++ + ++
Sbjct: 18  FLGSSNISFADNEPAIVAKHAVLMDYESGKILYNKDGNSKLYPASTTKVWTACLVLKEVK 77

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG- 153
                LN  I + K     + S +YLK    FT +Q + AL+  SAND +     ++ G 
Sbjct: 78  D----LNQVIEI-KDLPQIDGSSMYLKNGESFTVKQLLDALLVHSANDAAFVLARYVGGG 132

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           + +KF  LM+++AKKIG  NT + N  GL D N  TTA D A++      N   + +   
Sbjct: 133 NVQKFIDLMNSEAKKIGATNTHFNNPHGLPDPNHYTTAHDMALIAREAMNN-DTFRQIVK 191

Query: 214 IRKFRYR-------NRIITNHNKLLN--------------KMHNIDGIKTGYTRNSGFNI 252
            +  ++         R   N NK L               K   +DGIKTGYT  +G  +
Sbjct: 192 TKSLKFEATKAYPYERYFVNTNKFLTSHDKITYKGQPINIKYDIVDGIKTGYTDAAGKCL 251

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           ++S       ++  V    T+ +    +  LI    +    K      K+  + T  KK 
Sbjct: 252 LSSAVKDGRRVIVAVFNS-TNADLYLDSRILIDYGFDN--FKCATIVDKEKYTDT--KKV 306

Query: 313 LMIKKLKRTYSQ 324
           L  K+ +  Y  
Sbjct: 307 LFTKQHELIYEP 318


>gi|315613037|ref|ZP_07887948.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           ATCC 49296]
 gi|315315147|gb|EFU63188.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           ATCC 49296]
          Length = 413

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 79/335 (23%), Positives = 144/335 (42%), Gaps = 38/335 (11%)

Query: 31  MGKIL--FLSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           M KI+  F+++ +   AS + A+        +I ++    ++   K  ++P   AS+TK+
Sbjct: 1   MKKIILSFMTLFVFGTASTVSAQEFDVAAKHAIAVEATTGKILYEKDANQPVEIASITKL 60

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +T+Y+++E L    + L+T + +S            S + ++ + Y T EQ + A +  S
Sbjct: 61  VTVYLVYEALDQGTISLSTPVDISDYPYKLTTNSEASNVPMEARNY-TVEQLLEATMVSS 119

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DK 185
           AN  + A  E I+GSEK F   M  K  + G+Q+    N +GL+              D 
Sbjct: 120 ANSAAIALAEKIAGSEKDFVDKMRAKLLEWGIQDATIVNTTGLNNETLGDNIYPGSKKDD 179

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIK 241
               +A D AI+   L +++PQ  +        +    I + N +L  M      IDG+K
Sbjct: 180 ENKLSAYDVAIVARNLIRDYPQVLEITKKPTSTFAGLEIHSTNYMLEGMPAYRGGIDGLK 239

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELIT----SFLEKKTL 293
           TG T  +G + V +   K   I+ VV+           R      L+     +F  K  +
Sbjct: 240 TGTTDKAGASFVGTTVEKGMRIITVVLNADQQDTNPYARFTATSALLDYISANFALKTVV 299

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           +  + +    ++    K+  +I   K   S  ++I
Sbjct: 300 QKGEAYNDSKVTVLDGKEDSVIAVAKSDISIVQRI 334


>gi|55822070|ref|YP_140511.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein
           [Streptococcus thermophilus CNRZ1066]
 gi|55738055|gb|AAV61696.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein
           [Streptococcus thermophilus CNRZ1066]
          Length = 422

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 80/343 (23%), Positives = 150/343 (43%), Gaps = 41/343 (11%)

Query: 34  ILFLSIIMISMASELHAK--------PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMM 84
           I+ +++I+I +A+   A+            +I I+    ++   K        AS+TK++
Sbjct: 14  IIMIALILIGLATPALAQDQTDSFNVAAKHAIAIETTTGKVLYEKDATTPDGVASMTKIL 73

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           T Y++++ +   K+  +T++ +S            S + L  +  +T +Q + A +  SA
Sbjct: 74  TAYMVYKAVDQGKITWDTEVGISDYPFNLTVNSEVSNVPLDSR-KYTVKQLLDATLISSA 132

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HDKN 186
           N  + A  E ISG+E  F   M+ + K+ G+ +    NASGL               D  
Sbjct: 133 NSAAIALAEKISGTESTFVDTMTAQLKEWGITDAKLFNASGLNNKYLGDNRYPGSKPDDE 192

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNHNKLL----NKMHNIDGIK 241
              +A D AI+   L K++PQ  +     +  +  +  +T HN +L    N    +DG+K
Sbjct: 193 NTMSALDIAIIADHLIKDYPQVLEITKQTEVDFEGDNKLTTHNYMLEGQENYREGVDGLK 252

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVM----GMPTSQERDQKALELI---TSFLEKKTLK 294
           TG T  +G + V         ++ VVM    G      R     EL+   T   E KTL 
Sbjct: 253 TGTTELAGASFVAHSNENGMSLITVVMNAYNGGDDESARFTATNELLDYVTQNWEIKTLN 312

Query: 295 -HQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
            + Q  +K+++      +  +  +L+   +  +KI+++  S +
Sbjct: 313 TNGQIVKKNDIKVADGDRKTISARLESDLTVVQKINSRNDSVK 355


>gi|302871943|ref|YP_003840579.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574802|gb|ADL42593.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 451

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 77/312 (24%), Positives = 137/312 (43%), Gaps = 36/312 (11%)

Query: 21  SIYIQRNIQ-LMGKILFLSIIMI--------SMASELHAKPKYSSIVIDVNKNQMTGFKQ 71
           S ++++ +  L+   LF +I+            +++       S+I+++ +  Q+   K 
Sbjct: 2   SQFLKKVVLYLIISALFFAILFTYPLYTYSQQESTDKLGLSAKSAILVEAHTGQILFEKN 61

Query: 72  DEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP--SKLYLKEKTYFTT 128
              R +PAS TK++T  +      S +  LN    VS  A    P  S  YL      + 
Sbjct: 62  PNLRCFPASTTKVLTALVAI----SYEHDLNKIFKVSSKATMIEPGSSSYYLNPGETISF 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           +  + A++  SAND +    E I+GS  +F   M+  AK IG +N+ + N +GLH     
Sbjct: 118 QDLLYAMLLISANDAANVIAENIAGSIPEFVKKMNEYAKSIGAKNSHFVNPNGLHSPEHY 177

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRN---------RIITNHNKLLNK-----M 234
           TTA D +++     +N     K FS  ++R            +II N NKLL K      
Sbjct: 178 TTAYDLSLIARQAYQN-EMLRKIFSTVEYRITTASMHKKPEWQIIYNINKLLRKNSKYYY 236

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
               GIKTGYT  +   ++ S +  D  ++A+++    S++    A++L          K
Sbjct: 237 PYATGIKTGYTAQAKRCLIASAKKDDIELIAIIL---FSEDAFSDAIKLFNYGFNN--FK 291

Query: 295 HQQTHRKDNLSS 306
            ++   ++ +  
Sbjct: 292 REKLFSENQIVG 303


>gi|55820182|ref|YP_138624.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein
           [Streptococcus thermophilus LMG 18311]
 gi|55736167|gb|AAV59809.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein
           [Streptococcus thermophilus LMG 18311]
          Length = 422

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 80/343 (23%), Positives = 150/343 (43%), Gaps = 41/343 (11%)

Query: 34  ILFLSIIMISMASELHAK--------PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMM 84
           I+ +++I+I +A+   A+            +I I+    ++   K        AS+TK++
Sbjct: 14  IIMIALILIGLATPALAQDQTDSFNVAAKHAIAIETTTGKVLYEKDATTPDGVASMTKIL 73

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           T Y++++ +   K+  +T++ +S            S + L  +  +T +Q + A +  SA
Sbjct: 74  TAYMVYKAVDQGKITWDTEVGISDYPFNLTVNSEVSNVPLDSR-KYTVKQLLDATLISSA 132

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HDKN 186
           N  + A  E ISG+E  F   M+ + K+ G+ +    NASGL               D  
Sbjct: 133 NSAAIALAEKISGTESTFVDTMTAQLKEWGITDAKLFNASGLNNKYLGDNRYPGSKPDDE 192

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNHNKLL----NKMHNIDGIK 241
              +A D AI+   L K++PQ  +     +  +  +  +T HN +L    N    +DG+K
Sbjct: 193 NTMSALDIAIIADHLIKDYPQVLEITKQTEVDFEGDNELTTHNYMLEGQENYREGVDGLK 252

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVM----GMPTSQERDQKALELI---TSFLEKKTLK 294
           TG T  +G + V         ++ VVM    G      R     EL+   T   E KTL 
Sbjct: 253 TGTTELAGASFVAHSNENGMSLITVVMNAYNGGDDESARFTATNELLDYVTQNWEIKTLN 312

Query: 295 -HQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
            + Q  +K+++      +  +  +L+   +  +KI+++  S +
Sbjct: 313 TNGQIVKKNDIKVADGDRKTISARLESDLTVVQKINSRNDSVK 355


>gi|169346809|ref|ZP_02865760.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens C str.
           JGS1495]
 gi|169297091|gb|EDS79213.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens C str.
           JGS1495]
          Length = 444

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 81/339 (23%), Positives = 156/339 (46%), Gaps = 26/339 (7%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSS--IVIDVNKNQMTGFKQ- 71
           ++  + ++ I+ N  +    +F  I+  ++ +E +         +++D    ++   K  
Sbjct: 1   MSIKFKNLKIRLNFIISMAFIFSLILSTNVFAESNVPEIKGEGMVLMDGPTGEVLAEKNA 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +E   PAS TK MT  +  E     K +LN  + + K       +++ L+E   +T E+ 
Sbjct: 61  NEKLAPASTTKTMTALLTVE-----KANLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEEL 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + AL+ +SAND + A  E ISGSE+KFA LM+ +A+++G +NT + NASGL + + +TT 
Sbjct: 116 LNALLIQSANDAAVALAEHISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRN-------RIITNHNKLLNK-----MHNIDG 239
            D A++     KN P   +      +               N+N+L+++       +I  
Sbjct: 176 YDLALIMNAASKN-PIIDEITKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFC 234

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTH 299
            KTGYT  S      + +  D  ++  ++G  T  +  +    L+    +  +L   + +
Sbjct: 235 NKTGYTTKSRHTFTCAAKRGDRKLILTLLGYDTKDQYYEDTKNLLDYGFDNFSLV--KLY 292

Query: 300 RKDNLSS---TSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
            K+++        K +L +   +  Y  FK  + +  ST
Sbjct: 293 SKNDVVKEYYIDDKNTLSLVVPEDIYKTFKNSEIENLST 331


>gi|126700114|ref|YP_001089011.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
           penicillin-binding protein) [Clostridium difficile 630]
 gi|255101659|ref|ZP_05330636.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
           penicillin-binding protein) [Clostridium difficile
           QCD-63q42]
 gi|255307527|ref|ZP_05351698.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
           penicillin-binding protein) [Clostridium difficile ATCC
           43255]
 gi|115251551|emb|CAJ69384.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
           penicillin-binding protein) [Clostridium difficile]
          Length = 429

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 83/312 (26%), Positives = 133/312 (42%), Gaps = 34/312 (10%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           FL    IS A    A     ++++D    ++   K  +   YPAS TK+ T  ++ + ++
Sbjct: 18  FLGSSNISFADNEPAIVAKHAVLMDYESGKILYNKDGNSKLYPASTTKVWTACLVLKEVK 77

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG- 153
                LN  I + K     + S +YLK    FT +Q + AL+  SAND +     ++ G 
Sbjct: 78  D----LNQVIEI-KDLPQIDGSSMYLKNGESFTVKQLLDALLVHSANDAAFVLARYVGGG 132

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           + +KF  LM+++AKKIG  NT + N  GL D N  TTA D A++      N   + +   
Sbjct: 133 NVQKFIDLMNSEAKKIGATNTHFNNPHGLPDPNHYTTAHDMALIAREAMNN-DTFRQIVK 191

Query: 214 IRKFRYR-------NRIITNHNKLLN--------------KMHNIDGIKTGYTRNSGFNI 252
            +  ++         R   N NK L               K   +DGIKTGYT  +G  +
Sbjct: 192 TKSLKFEATKAYPYERYFVNTNKFLTSHDKITYKGQPINIKYDIVDGIKTGYTDAAGKCL 251

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           ++S       ++  V    T+ +    +  LI    +    K      K+  + T  KK 
Sbjct: 252 LSSAVKDGRRVIVAVFNS-TNADLYLDSRILIDYGFDN--FKCATIVDKEKYTDT--KKV 306

Query: 313 LMIKKLKRTYSQ 324
           L  K+ +  Y  
Sbjct: 307 LFTKQHELIYEP 318


>gi|255284449|ref|ZP_05349004.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
           DSM 14469]
 gi|255264994|gb|EET58199.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
           DSM 14469]
          Length = 403

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 67/335 (20%), Positives = 135/335 (40%), Gaps = 31/335 (9%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKP-------KYSSIVIDVNKNQMTGFKQDEPRYP 77
           ++  + +  +  L ++M   A+     P        +S++++D    ++   K +E   P
Sbjct: 3   KKWRRFLACLSALLVMMSGSAAATEEVPEELKNLYAHSAVLMDGGSGRILFGKNEEEVLP 62

Query: 78  -ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS TK+MT  +  E  +  ++ + +       AA Q    L ++    F  E  + +L+
Sbjct: 63  MASTTKIMTCILTLESGRQGEIAVASA-----NAAAQPKVHLGVRTGEEFYVEDLLYSLM 117

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN----QITTAR 192
             S ND +    E I GS + FA +M+ KA ++G  +T +   +GL   +      TTA 
Sbjct: 118 LESHNDSAVMIAEHIGGSVEGFAAMMNEKAAQLGCVSTHFVTPNGLDATDGSGTHSTTAA 177

Query: 193 DQAILGILLRKNFPQ---YYKYFSIRKFRYRN------RIITNHNKLLNKMHNIDGIKTG 243
           D A +        PQ   + +    R + + N          NHN  ++ M  +   KTG
Sbjct: 178 DLAEIMRYCVSISPQREAFLQITQTRSYSFSNVEQSRSFSCQNHNAFMDMMEGVISGKTG 237

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKKTLKHQQTHR 300
           +T  +G+  V +L       +  ++       R    + A  L+     K+   +Q  + 
Sbjct: 238 FTSAAGYCYVCALEDDGRLFIVALLACGWPDNRTWKWRDAAALL--GYGKENYHNQTINC 295

Query: 301 KDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
            +   + +++  L   K     +  + +   A ++
Sbjct: 296 TEKPRTLTVEGGLSGDKNPWREAVVEAVPDTAAAS 330


>gi|260437075|ref|ZP_05790891.1| serine-type D-Ala-D-Ala carboxypeptidase [Butyrivibrio crossotus
           DSM 2876]
 gi|292810384|gb|EFF69589.1| serine-type D-Ala-D-Ala carboxypeptidase [Butyrivibrio crossotus
           DSM 2876]
          Length = 396

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 150/343 (43%), Gaps = 49/343 (14%)

Query: 31  MGKILFLSIIMISMASELH--AKP----KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           M KIL + II + M   +    +P      ++I+ID +  ++   K  ++    AS TK+
Sbjct: 1   MKKILAVIIIAVVMCQSVTKGEEPENLYARAAILIDADSGRILYGKNENDVMPMASTTKI 60

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MTL +  +Y      + + ++  S  AA +   +L   +   +T  + +  ++ RS NDV
Sbjct: 61  MTLLVALKYG-----NPSDRVTFSSYAAKEPDVQLNALKGEQYTLNELLYLMMLRSYNDV 115

Query: 144 STAFGEFISG-----------------SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           +    E++ G                   K+F   M+  A K+G+ +T +   +GL  ++
Sbjct: 116 AMMVAEYVGGVLNGDTSPNNTTEESKEDVKRFIDEMNGYAVKLGLSDTYFVTPNGLDGED 175

Query: 187 ----QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR------IITNHNKLLNKMHN 236
                 TTA + A++     K+  +  K  + + F YR +       +TN N+ L+   N
Sbjct: 176 EGRIHSTTAYELALIAREALKS-EEVIKICTTKSFSYREQNGKRSGTVTNGNRFLDINKN 234

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM---PTSQERDQKALELITSFLEK--- 290
             G+KTG+T  +G+  V + +  D   ++VV+G    P    +     +L++   +    
Sbjct: 235 AIGMKTGFTGKAGYCFVGATKVDDRTFISVVLGCGWPPNKNYKWADTGKLMSYGRDNYFY 294

Query: 291 KTLKHQQTHRKDNLSSTSLKKSL---MIKKLKRTYSQFKKIDA 330
           + +  +    K+      L++S+   +  ++ R  S   ++D 
Sbjct: 295 RNIFEKTYDYKEIKVENGLQESVGTYIPFEVNRLLSDEDEVDV 337


>gi|255656482|ref|ZP_05401891.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
           penicillin-binding protein) [Clostridium difficile
           QCD-23m63]
 gi|296450072|ref|ZP_06891834.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           difficile NAP08]
 gi|296878453|ref|ZP_06902459.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           difficile NAP07]
 gi|296261080|gb|EFH07913.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           difficile NAP08]
 gi|296430537|gb|EFH16378.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           difficile NAP07]
          Length = 429

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 83/312 (26%), Positives = 134/312 (42%), Gaps = 34/312 (10%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           FL    IS A    +     ++++D    ++   K  +   YPAS TK+ T  ++ + ++
Sbjct: 18  FLGSSNISFADNEPSIVAKHAVLMDYESGKILYNKDGNSKLYPASTTKVWTACLVLKEVK 77

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
                LN  I + K     + S +YLKE   FT +Q + AL+  SAND +     ++ G 
Sbjct: 78  D----LNQVIEI-KNLPQIDGSSMYLKEGESFTVKQLLNALLVHSANDAAFVLARYVGGG 132

Query: 155 E-KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           + +KF  LM+++AKKIG  NT + N  GL D N  TTA D A++      N   + +   
Sbjct: 133 DVQKFIDLMNSEAKKIGATNTHFNNPHGLPDPNHYTTAHDMALIAREAMNN-DTFRQIVK 191

Query: 214 IRKFRYR-------NRIITNHNKLLN--------------KMHNIDGIKTGYTRNSGFNI 252
            +  ++         R   N NK L               K   +DGIKTGYT  +G  +
Sbjct: 192 TKSLKFEATKAYPYERYFVNTNKFLTSHDKITYKGQPINIKYDIVDGIKTGYTDAAGKCL 251

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           ++S       ++  V    T+ +    +  LI    +    K      K+  + T  KK 
Sbjct: 252 LSSAVKDGRRVIVAVFNS-TNADLYLDSRILIDYGFDN--FKCATIVDKEKYTDT--KKV 306

Query: 313 LMIKKLKRTYSQ 324
           L  K+ +  Y  
Sbjct: 307 LFTKQHELVYEP 318


>gi|300854319|ref|YP_003779303.1| D-alanyl-D-alanine carboxypeptidase-like protein [Clostridium
           ljungdahlii DSM 13528]
 gi|300434434|gb|ADK14201.1| D-alanyl-D-alanine carboxypeptidase related protein [Clostridium
           ljungdahlii DSM 13528]
          Length = 367

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 69/246 (28%), Positives = 120/246 (48%), Gaps = 11/246 (4%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +I +D     +   K      P AS TK+MT+ +  +Y +     L+ ++ +S  +A   
Sbjct: 43  AIAMDSKSKVIMYQKNASELVPMASTTKIMTVLVAIKYGK-----LDEKVQISSRSAGIR 97

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S +  K+    T ++ +  L+ RS ND + A  E +SGS ++F  LM+  A +IG+ NT
Sbjct: 98  GSVVGYKKGESITLKELLYGLMLRSGNDAAIAISEGVSGSVEEFVKLMNEYASEIGVINT 157

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNKL 230
            +K   GL  +   TTA D A+L  +  KN   + +  S +          R   N NK+
Sbjct: 158 HFKTPHGLDKEEHYTTAYDLAVLTSIA-KNNTLFNEIVSSKDVDGPQNGFTRSYHNINKI 216

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L K+ + +G+KTGYT  +G  +VTS + + + ++ VV+  P   E  +K  + +    + 
Sbjct: 217 LWKIPDANGVKTGYTGKAGKCLVTSTKVQGNDVIIVVLNCPRRWEETEKIYKYVDKNFKF 276

Query: 291 KTLKHQ 296
             L  +
Sbjct: 277 NKLFSK 282


>gi|52143878|ref|YP_082950.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
 gi|51977347|gb|AAU18897.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
          Length = 374

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 71/313 (22%), Positives = 139/313 (44%), Gaps = 25/313 (7%)

Query: 37  LSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQ 94
            S++ I   +++++     ++++++ +  ++   K + EP+  AS+TK+MT  +  E  +
Sbjct: 15  ASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASITKIMTALLAAESGK 74

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
                +  ++ VS  A     S +YLK       E  +  L+ RS ND +    E + GS
Sbjct: 75  -----MKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVGGS 129

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRKNFPQYYKYFS 213
            + F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L      N   + K F 
Sbjct: 130 IEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTRYAMGN-ETFKKIFG 188

Query: 214 IRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
            + ++    +    N +KL+   +    G KTG+T+ +G  +VT+       ++ V +  
Sbjct: 189 TKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTLSA 248

Query: 271 PTSQ-----------ERDQKALELITSFLEKKTLKHQQ--THRKDNLSSTSLKKSLMIKK 317
            +             +R ++   L    L + T K      + K++ S    ++      
Sbjct: 249 SSDWDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYTKNSFSVPLTEEEKKSVV 308

Query: 318 LKRTYSQFKKIDA 330
           LK    +  K+  
Sbjct: 309 LKVELDKSAKLVD 321


>gi|225181453|ref|ZP_03734896.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
           AHT 1]
 gi|225167851|gb|EEG76659.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
           AHT 1]
          Length = 406

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 74/313 (23%), Positives = 140/313 (44%), Gaps = 16/313 (5%)

Query: 33  KILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYI 88
           +++   ++++       A+P     ++I+I+    ++   K      +PAS+TK++T  +
Sbjct: 7   RVIITVVVLLFYTGTAMAEPVVQSTAAILINSRTGEVLWEKNSHQQMFPASITKILTTIL 66

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           + E         +     S+ A     S LYL+     T E  + AL+ RSAND S    
Sbjct: 67  LLENAAE-----DEVAVASELAEKTRGSSLYLRRGQELTVEDLLYALMLRSANDGSVVAA 121

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FP 206
           E +SGS   FA LM+ KA++ G  N+ + N  GL D+N +TTA D A++     +N  F 
Sbjct: 122 ELVSGSVDSFAQLMNQKARQAGAINSTFTNPHGLPDENHLTTAYDMAMITRYAMQNQRFR 181

Query: 207 Q--YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
                +  +I      +  + N   LL+    + GIKTGYT  +G   V + +     ++
Sbjct: 182 DLAATQRHTIVWPEGEDSYLINRIPLLSTYEGMLGIKTGYTTPAGRTFVGAAQRDGLELI 241

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLK-KSLMIKKLKRTYS 323
            VV+   +  E     + L+    +  T+  Q   + D + +T ++    +  +   ++ 
Sbjct: 242 TVVLQA-SGNELWDDTVALLDYGFDNFTMV-QPVVQGDIMHTTEVRFGDAVSLQAADSFE 299

Query: 324 QFKKIDAKAHSTQ 336
             + ++ K    +
Sbjct: 300 LTRPVNNKEVDME 312


>gi|312127682|ref|YP_003992556.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777701|gb|ADQ07187.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 451

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 131/296 (44%), Gaps = 34/296 (11%)

Query: 21  SIYIQRNIQ-LMGKILFLSIIMI--------SMASELHAKPKYSSIVIDVNKNQMTGFKQ 71
           S ++++ +  L+   LF +I+            +++       S+I+++ +  Q+   K 
Sbjct: 2   SQFLKKVVLYLIISALFFAILFTYPLYTYSQQESTDKLGLSAKSAILVEAHTGQILFEKN 61

Query: 72  DEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP--SKLYLKEKTYFTT 128
                +PAS TK++T  +      S +  LN    VS  A    P  S  YL      + 
Sbjct: 62  PNLICFPASTTKVLTALVAI----SYEHDLNKIFKVSSKATMIEPGSSSYYLNPGETISF 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           +  + A++  SAND +    E I+GS  +F   M+  AK IG +N+ + N +GLH     
Sbjct: 118 QDLLYAMLLISANDAANVIAENIAGSIPEFVEKMNEYAKSIGAENSHFVNPNGLHSPQHY 177

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRN---------RIITNHNKLLNK-----M 234
           TTA D +++     +N     K FS  ++R            +II N NKLL K      
Sbjct: 178 TTAYDLSLIARQAYQNEI-LRKIFSTVEYRITTASMHKKPEWQIIYNINKLLRKNSKYYY 236

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
               GIKTGYT  +   ++ S +  D  ++AV++   +S++    A++L       
Sbjct: 237 PYATGIKTGYTAQAKRCLIASAKKDDIELIAVIL---SSEDAFSDAIKLFNYGFNN 289


>gi|322388019|ref|ZP_08061626.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus infantis
           ATCC 700779]
 gi|321141292|gb|EFX36790.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus infantis
           ATCC 700779]
          Length = 413

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 145/343 (42%), Gaps = 33/343 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTK 82
           +++    +  ++         A +     K+ +I ++ N  ++   K   +P   AS++K
Sbjct: 1   MKKLFLTLITLISFGSATTVFAQDFDVAAKH-AIAVEANSGKILYEKDATQPVEIASISK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L+  K+ L+T + +S            S + ++ + Y T E+ + A +  
Sbjct: 60  LLTVYLVYEALEQGKITLSTPVEISDYPYQLTTNSEASNVPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E ++GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKVAGSEKDFVDMMKAKLLEWGIQDATLVNTTGLNNETLGNNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
                +A D A++   L   +PQ  +        +    I + N +L+ M      IDG+
Sbjct: 179 DENKMSAYDVAVVARNLILKYPQVLEITKKPSSTFAGMTIHSTNSMLDGMPAYRGGIDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ----ERDQKALELIT----SFLEKKT 292
           KTG T  +G + V +   K   I+ VV+           R      L+     +F  +  
Sbjct: 239 KTGNTDKAGASFVGTTVEKGMRIITVVLNADNQDTNPYARFTATSALLDYISSNFALQTI 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           +K  ++++         K+  +    K      +++ ++A ST
Sbjct: 299 VKQGESYQDSKSPVYDGKQDTVTAVAKEDIKIVQRLGSRAEST 341


>gi|322421006|ref|YP_004200229.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacter sp.
           M18]
 gi|320127393|gb|ADW14953.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacter sp.
           M18]
          Length = 300

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 69/285 (24%), Positives = 135/285 (47%), Gaps = 17/285 (5%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLY 87
           +     + ++ + +S A    ++    + ++ +N  Q+   +     R PASLTKMMT  
Sbjct: 9   KCACAAILIAGVPVSTADAARSRHPSPTYLVKIN-GQVFRQQNANIRRAPASLTKMMTAL 67

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           ++ E     +  L+  + VS++AA +  S++ L+          + A +  SAND   A 
Sbjct: 68  VVME-----RCDLDEVVVVSRSAARETGSRIGLRRGDKVRVRDLLAAALIASANDACRAL 122

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            +  SG++K F + M+ +A+ + ++NT + NA G  +K   + A D A L     +  P+
Sbjct: 123 ADHTSGNQKDFVVQMNARARALDLENTHFTNACGHDNKGLYSNAHDLARLAERAMQ-LPR 181

Query: 208 YYKYFSIRKFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           + +  S R  R       R   + N N+L+ +     G+KTG T N+G  +V     ++ 
Sbjct: 182 FAELVSKRSMRISTVDGKRTYYLRNKNRLIGRYPGAIGVKTGTTPNAGQCLVALAEREER 241

Query: 262 PIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSS 306
            ++ V+M    SQ R + A  L+ +     + +H  ++  ++ S+
Sbjct: 242 KVLVVIM---HSQNRWRAAPALLDAAFAASSPRHVPSNDTESTSA 283


>gi|21674088|ref|NP_662153.1| D-alanyl-D-alanine carboxypeptidase [Chlorobium tepidum TLS]
 gi|21647242|gb|AAM72495.1| D-alanyl-D-alanine carboxypeptidase [Chlorobium tepidum TLS]
          Length = 474

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 120/291 (41%), Gaps = 26/291 (8%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPK-------YSSIVIDVNKNQMT 67
           +  P+G  Y  R + L   + F  + +I + +    +P         + IV +    +  
Sbjct: 1   MGRPHGRFYATRKV-LFTLLAFFVLTLIPLTASAKRRPAPEGEDAVAAYIVKETGSPEFL 59

Query: 68  GFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYF 126
             K  D PR PASLTK+MT  +  E  +     +N  + +   A    P++   K    F
Sbjct: 60  KSKNADTPRSPASLTKIMTCLLAIESGR-----MNDVVTIPLEATQVEPTRAGFKPGEQF 114

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-- 184
                + A +  S+ND + A    + GS   F  +M+ +A+ +GM +T++ N +G     
Sbjct: 115 RLRDLVKAAMVNSSNDAAFAIAIHLGGSLDAFVAMMNARARALGMSHTVFTNPAGYDRGI 174

Query: 185 -KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN------RIITNHNKLLNKMHNI 237
                TTARD  IL     + FP++     + +  +          +  HNKLL +    
Sbjct: 175 YAGNRTTARDLVILTERAIR-FPEFNAIAKLDRVDFNELSTGKIYSLRTHNKLLERYPYS 233

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            GIKTGYT  +G  ++         ++ +++   T  +R   A  +     
Sbjct: 234 VGIKTGYTSMAGPCLIARALRNGKDMLVIMLSART--DRWSLASTMFDQGF 282


>gi|237747199|ref|ZP_04577679.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacter formigenes HOxBLS]
 gi|229378550|gb|EEO28641.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacter formigenes HOxBLS]
          Length = 383

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 76/311 (24%), Positives = 144/311 (46%), Gaps = 22/311 (7%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLT--KMMTLYIIFEYLQSKKLH 99
           +S+ S   A    S +++DV  NQ+   K  + R  AS T  K+MT Y++F  L+  ++ 
Sbjct: 23  VSLPSPNLA--ARSWLLMDVVSNQVLASKNADDR-IASRTASKLMTAYLVFGALRDGRVS 79

Query: 100 LNTQIPVSKTAAT--QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           L+  I VS+  A       +++L+     T  + +L LI R  +D + A    +SG EK 
Sbjct: 80  LDQPIVVSEQVARLGTGGPEMFLQNGGTATVRELLLGLIVRGGDDAALALAIAVSGDEKT 139

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F  LM+ +A ++GM++T++ +  G   K   +T  D A+L + + ++F  Y  +FS ++F
Sbjct: 140 FVELMNREAVRLGMKSTLFAHPYGSSGKEGYSTPSDMAVLALGVMRDFSDYSSFFSTKEF 199

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK----DDPIVAVVMGMPTS 273
            Y    + N N+LL     +DG+    +    + ++ S +      +  ++++V G  + 
Sbjct: 200 SYNGIRMRNGNRLLWLDGAVDGLFATNSPEESYTLLASAKRDSVLGERRMLSIVTGAVSD 259

Query: 274 QERDQKALELITSFLEK----KTLKHQQTHRKDNLSSTSLKK-------SLMIKKLKRTY 322
           Q R Q++L+L+    +     +  +  Q      +   S  K          I   K   
Sbjct: 260 QARMQESLKLLNWGFQNFDMIRLFEKNQIVATPEVWKGSSGKVEVGFNNDTFISVPKGAV 319

Query: 323 SQFKKIDAKAH 333
           S+ K +  +  
Sbjct: 320 SRMKSVLVRND 330


>gi|228984648|ref|ZP_04144821.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775042|gb|EEM23435.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 362

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 131/283 (46%), Gaps = 17/283 (6%)

Query: 35  LFLSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEY 92
           ++ S++ I   +++++     ++++++    ++   K + EP+  AS+TK+MT  +  E 
Sbjct: 1   MYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAES 60

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
            +     +   + VS  A     S +YLK       E  +  L+ RS ND +    E + 
Sbjct: 61  GK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDIVYGLMLRSGNDAAQVIAENVG 115

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRKNFPQYYKY 211
           GS + F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L      N   + K 
Sbjct: 116 GSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTRYAMGN-ETFKKI 174

Query: 212 FSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+    +  ++ V +
Sbjct: 175 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDELDLIVVTL 234

Query: 269 GMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
              +  +     + L     E+   K      +  L+  + KK
Sbjct: 235 SASSDWD---DHMNLFDKGFER--FKQTNVVGQGALAEITEKK 272


>gi|229109023|ref|ZP_04238624.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
 gi|229126883|ref|ZP_04255895.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
 gi|228656823|gb|EEL12649.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
 gi|228674492|gb|EEL29735.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
          Length = 363

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 65/284 (22%), Positives = 131/284 (46%), Gaps = 17/284 (5%)

Query: 34  ILFLSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFE 91
           +++ S++ I   +++++     ++++++    ++   K + EP+  AS+TK+MT  +  E
Sbjct: 1   MMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAE 60

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
             +     +   + VS  A     S +YLK       E  +  L+ RS ND +    E +
Sbjct: 61  SGK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESV 115

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRKNFPQYYK 210
            GS   F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L      N   + K
Sbjct: 116 GGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGN-ETFKK 174

Query: 211 YFSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+       ++ V 
Sbjct: 175 IFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKGGLDLIVVT 234

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
           +   +  +     + L     ++   K  +   +  ++  + KK
Sbjct: 235 LSASSDWD---DHMNLFDKGFDR--FKQTKVLGQGAIAEINEKK 273


>gi|218666161|ref|YP_002427291.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|218518374|gb|ACK78960.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 389

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 108/237 (45%), Gaps = 2/237 (0%)

Query: 54  YSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
             ++++DVN  Q+      ++P  P+ L K+MT Y++++  +   +     + VS  A  
Sbjct: 46  QGAVLLDVNSGQVLVAENAEKPLNPSGLVKLMTAYVMYQAEKQGLVPPQRPVHVSNEAWH 105

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S+++++     T  Q    L+    ND + A  + ++GS   F  LM++ A  +G+Q
Sbjct: 106 AQGSRMFIQPHLPVTMTQLEHGLLIDGGNDAAVAIAQTVAGSVGGFVDLMNHDAAAMGLQ 165

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           +T + N  GL    Q +TA D A L   L + +P   +      + Y +    N+N L  
Sbjct: 166 HTHFTNPDGLPQPGQTSTALDIARLSKRLIQAYPHVLQVAGKVSYTYNHITQYNYNPLAG 225

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           +  NI+G+  G    + +N+  S       +VAVV+G P+       A  L+     
Sbjct: 226 Q-ENINGLGVGLAAKNSWNLDVSATRGGRTLVAVVLGAPSRSAAGSDASALLDYGWN 281


>gi|198284618|ref|YP_002220939.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|198249139|gb|ACH84732.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 415

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 108/237 (45%), Gaps = 2/237 (0%)

Query: 54  YSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
             ++++DVN  Q+      ++P  P+ L K+MT Y++++  +   +     + VS  A  
Sbjct: 72  QGAVLLDVNSGQVLVAENAEKPLNPSGLVKLMTAYVMYQAEKQGLVPPQRPVHVSNEAWH 131

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S+++++     T  Q    L+    ND + A  + ++GS   F  LM++ A  +G+Q
Sbjct: 132 AQGSRMFIQPHLPVTMTQLEHGLLIDGGNDAAVAIAQTVAGSVGGFVDLMNHDAAAMGLQ 191

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           +T + N  GL    Q +TA D A L   L + +P   +      + Y +    N+N L  
Sbjct: 192 HTHFTNPDGLPQPGQTSTALDIARLSKRLIQAYPHVLQVAGKVSYTYNHITQYNYNPLAG 251

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           +  NI+G+  G    + +N+  S       +VAVV+G P+       A  L+     
Sbjct: 252 Q-ENINGLGVGLAAKNSWNLDVSATRGGRTLVAVVLGAPSRSAAGSDASALLDYGWN 307


>gi|229121111|ref|ZP_04250348.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
 gi|229183764|ref|ZP_04310981.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
 gi|228599613|gb|EEK57216.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
 gi|228662230|gb|EEL17833.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
          Length = 357

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 130/296 (43%), Gaps = 24/296 (8%)

Query: 53  KYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++++++ +  ++   K + EP+  AS+TK+MT  +  E  +     +  ++ VS  A 
Sbjct: 15  ARNAVLMEQHSGRVLYGKAEHEPQKIASITKIMTALLAAESGK-----MKERVLVSNEAV 69

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S +YLK       E  +  L+ RS ND +    E + GS + F  LM+ KAK+IGM
Sbjct: 70  RVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQIGM 129

Query: 172 QNTIYKNASGLH-DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHN 228
           ++T + N  GL  D +  ++A D A+L      N   + K F  + ++    +    N +
Sbjct: 130 KDTHFSNPHGLDGDGSHYSSAYDMALLTRYAMGN-ETFKKIFGTKTYKSDSWDYPWKNKH 188

Query: 229 KLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ-----------ER 276
           KL+   +    G KTG+T+ +G  +VT+       ++ V +   +             +R
Sbjct: 189 KLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTLSASSDWDDHMNLFDKGFDR 248

Query: 277 DQKALELITSFLEKKTLKHQQ--THRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
            ++   L    L + T K      + K++ S    ++      LK    +  K+  
Sbjct: 249 FEQTKVLGQGALAEITEKKYANHVYTKNSFSVPLTEEEKKSVVLKVELDKSAKLVD 304


>gi|218132659|ref|ZP_03461463.1| hypothetical protein BACPEC_00519 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992385|gb|EEC58388.1| hypothetical protein BACPEC_00519 [Bacteroides pectinophilus ATCC
           43243]
          Length = 436

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 75/262 (28%), Positives = 114/262 (43%), Gaps = 25/262 (9%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
                    S+I+ID +   +   K    R YPAS TK+MT  +  E        L+  I
Sbjct: 23  PASPTISAGSAILIDADTGAILYEKDCHSRAYPASTTKIMTSLLAIE-----NSSLDDVI 77

Query: 105 PVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
             SK AA     + +    +E   FT EQ + A + +SAN+V+   GE+I+GS   F+ +
Sbjct: 78  TFSKAAANSYKWDEANTGTREGEQFTMEQALYATLLKSANEVAYGIGEYIAGSIPAFSDM 137

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN-------------FPQY 208
           M+ +A+++G  NT + N +GL D N  TTA D A++G     N              P  
Sbjct: 138 MNERARELGALNTHFNNPNGLSDTNHYTTAYDLAMIGRACFNNSTFMTISSSVNYSIPPT 197

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            K    R FR R+  + N N    +     G KTG+T  SG+ ++T  +  D  ++ VV 
Sbjct: 198 NKTAETRYFRQRHG-MANSNG--YQYEYFKGGKTGFTDESGYTLITFAQKDDMRLICVVF 254

Query: 269 GMPTSQERDQKALELITSFLEK 290
                  R   +  L       
Sbjct: 255 RESDDASRYVDSKALFDYGFNN 276


>gi|229006378|ref|ZP_04164057.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus mycoides Rock1-4]
 gi|228754877|gb|EEM04243.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
           S11 [Bacillus mycoides Rock1-4]
          Length = 201

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 102/185 (55%), Gaps = 6/185 (3%)

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +TK+MT+ +I E ++  KL L  ++  S+ AA+   S+++L+     T  + +  +   S
Sbjct: 1   MTKIMTMLLIMEQVEKGKLKLEDKVRASEHAASMGGSQIFLEPGEEMTVNEMLKGIAIAS 60

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND S A  E I+GSE+ F  +M+ KAK +G++NT ++N +GL  K+  +TA D +I+  
Sbjct: 61  GNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTAYDMSIMAK 120

Query: 200 LLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
            L K +P   KY       +R+   +   + N NKL+     +DG+KTG+T  + + +  
Sbjct: 121 ELMK-YPLIRKYTGKYEDYLRENTEKKFWLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTA 179

Query: 255 SLRYK 259
           S   K
Sbjct: 180 SAEKK 184


>gi|298244964|ref|ZP_06968770.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
           racemifer DSM 44963]
 gi|297552445|gb|EFH86310.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
           racemifer DSM 44963]
          Length = 319

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 101/245 (41%), Gaps = 18/245 (7%)

Query: 56  SIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---- 110
           + ++D+    +      ++    AS TK+MT  I  +       +L+ +I V + A    
Sbjct: 76  AYLVDMQNGHVLYDIHGEQAAPMASTTKIMTALIAIQ-----TGNLDQEITVKRDAYLHV 130

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S   L     FT  + +  L+  S  D + A  + ++GS + F + M+  A ++ 
Sbjct: 131 IELGSSNAGLVPGEQFTLRELLYGLMLPSGGDAAIAISDALAGSPENFVVRMNLFASRLH 190

Query: 171 MQNTIYKNASGLHDKN-QITTARDQAILGILLRKNFPQYYKYFSIRKFR------YRNRI 223
           +  T Y N  GL  ++   ++A D   L      N P + +      +       +    
Sbjct: 191 LFQTHYTNVDGLTSEDTHYSSAADLTRLTRYALTN-PIFRQIVDTPTYTLPTTKQHGPHT 249

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            TN N LL+    + G+KTG+T  +G+ +V   +     ++ VV+  P    RDQ   +L
Sbjct: 250 WTNTNTLLSTYKGMLGVKTGHTDLAGYCLVFEAQRNGHSLIGVVLNSPDQAIRDQDVSKL 309

Query: 284 ITSFL 288
           +    
Sbjct: 310 LNWGF 314


>gi|239625589|ref|ZP_04668620.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519819|gb|EEQ59685.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 391

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 74/259 (28%), Positives = 117/259 (45%), Gaps = 24/259 (9%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           +  A     + ++D     +   K  D   YPAS+TK+MT  ++ E       +L+ ++ 
Sbjct: 7   QQPAIEAEGAALLDAATGNVLFSKNGDTKFYPASITKLMTALLVAE-----NCNLDDKVT 61

Query: 106 VSKTAATQNPS---KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            S TA T   S    + +      T  Q + AL+ +SAN+V  A  E ++GS  KFA +M
Sbjct: 62  FSSTATTNLESGAVSINMTAGDVMTVRQCLYALLLKSANEVGNALAEHVAGSNAKFAEMM 121

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-- 220
           + KA  +G  NT + N  GL+D N  TT RD A++     +N        S R +     
Sbjct: 122 NAKAAALGCTNTHFTNPHGLNDTNHYTTPRDMALIARAAFQN-DTVKTVASTRTYTLPPT 180

Query: 221 -----NRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
                   +T  +K+LN         + G KTGYT  +G  +VT++      ++AVVM  
Sbjct: 181 IKNPSGLTVTMGHKMLNPSDSRYYPGVIGGKTGYTSKAGNTLVTAVEKDGVRLIAVVMKS 240

Query: 271 PTSQERDQKALELITSFLE 289
            ++   D KA  +     E
Sbjct: 241 KSTHYTDTKA--MFDYGFE 257


>gi|229160519|ref|ZP_04288514.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
 gi|228622929|gb|EEK79760.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
          Length = 362

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 65/283 (22%), Positives = 129/283 (45%), Gaps = 17/283 (6%)

Query: 35  LFLSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEY 92
           ++ S++ I   +++++     ++++++    ++   K +   +  AS+TK+MT  +  E 
Sbjct: 1   MYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHESQKIASITKIMTALLAAES 60

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
            +     +   + VS  A     S +YLK       E  +  L+ RS ND +    E + 
Sbjct: 61  GK-----MKEMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVG 115

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRKNFPQYYKY 211
           GS + F  LM+ KAK+IGM++T + N  GL  D +  ++A D A+L      N   + K 
Sbjct: 116 GSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGN-ETFKKI 174

Query: 212 FSIRKFR--YRNRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           F  + ++    +    N +KL+   +    G KTG+T+ +G  +VT+       ++ V +
Sbjct: 175 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 234

Query: 269 GMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
              +  +     + L     E+   K  +   +  L+  + KK
Sbjct: 235 SASSDWD---DHMNLFDKGFER--FKQTKVLGQGALAEINEKK 272


>gi|258512050|ref|YP_003185484.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478776|gb|ACV59095.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 290

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 75/263 (28%), Positives = 129/263 (49%), Gaps = 13/263 (4%)

Query: 32  GKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIF 90
                L+    +  +   A    +++V D    ++   K  DEP YPAS TK+MT  ++ 
Sbjct: 23  ATFAVLAPWAQAETTRPPAVNAKAAVVYDATDRKVLYDKRGDEPMYPASTTKLMTAILLV 82

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           ++LQ      +  + +S+TA+ Q   +L L+  T  T EQ +LALI +SANDV+    E 
Sbjct: 83  QHLQP-----DDPVYISETASRQPRVRLGLRPGTELTAEQALLALIMKSANDVAYGIAET 137

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           I GS++ FA +M+ +A+ IG  +T +   +GLH     T+A+D A++       +P+  +
Sbjct: 138 IGGSQEGFARMMNVEARLIGCTHTQFVTPNGLHADAHTTSAKDIALITAKAI-TYPRIVR 196

Query: 211 YFSIRKFRYRNRIITNHNKLLNKMH----NIDGIKTGYTRNSGFNIVTSLRY--KDDPIV 264
                +     + I N N+LL           G KTG+T  + + + T++R       +V
Sbjct: 197 AMQTPQATIAGKTIRNGNRLLYSPPASIGEFIGGKTGFTSRAMYCLATAVRRPYDGHILV 256

Query: 265 AVVMGMPTSQERDQKALELITSF 287
           +VV G P      ++ + L+T  
Sbjct: 257 SVVFGAPRKSLMYRETVRLLTWA 279


>gi|182419858|ref|ZP_02951098.1| D-alanyl-D-alanine carboxypeptidase [Clostridium butyricum 5521]
 gi|237666495|ref|ZP_04526480.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376406|gb|EDT73988.1| D-alanyl-D-alanine carboxypeptidase [Clostridium butyricum 5521]
 gi|237657694|gb|EEP55249.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 413

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 68/308 (22%), Positives = 126/308 (40%), Gaps = 22/308 (7%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPAS 79
           ++R  + +  +L    I +++ +E  AKP+ ++    +ID +   +   K  D    PAS
Sbjct: 1   MKRYFKFLSMLLLFLCIPLTVHAET-AKPEINAQGCALIDASSGTILYGKNEDCTFEPAS 59

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
            TK+MT  +  +     K  L  ++ + +   + + + + L +    T    +L L+  S
Sbjct: 60  TTKVMTALVALD-----KCKLTDEVTIQENFTSVDGTAIGLLKGDVVTVHDLLLGLLMES 114

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND +      +SGS   FA LM+ KAK++G   T ++N SGL D   +TT  D A+   
Sbjct: 115 GNDCANELAYHVSGSIDSFAQLMNEKAKELGATATSFRNPSGLPDPEHLTTPHDLALFLR 174

Query: 200 LLRKN--FPQYYK--YFSIRKFRYRNRI--ITNHNKLLNK-----MHNIDGIKTGYTRNS 248
              KN  F    +  Y +I       R   I N N ++NK            K GYT  +
Sbjct: 175 EAIKNQDFLDIAQTPYATITMINNPERTIIINNKNYMINKNSKYYYKYALCGKNGYTTKA 234

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
               V+S       ++A  +      +       +     +  +   +   +   ++   
Sbjct: 235 NHTYVSSAEKDGHILIASFLNAMDKNQNFFDMQSVFNYGFDNYSFV-KLYDKGQEVAQYD 293

Query: 309 LKKSLMIK 316
           + K+L + 
Sbjct: 294 VTKNLTVP 301


>gi|306829382|ref|ZP_07462572.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus mitis ATCC
           6249]
 gi|304428468|gb|EFM31558.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus mitis ATCC
           6249]
          Length = 413

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 76/343 (22%), Positives = 145/343 (42%), Gaps = 33/343 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTK 82
           +++ I  +  +L    I    A       K+ +I ++    ++   K   +P   AS+TK
Sbjct: 1   MKKIIISLLTLLTFGTISTISAQSFDIAAKH-AIAVEATTGKVLYEKDASQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L+   + L+T + +S            S + ++ + Y T EQ + A +  
Sbjct: 60  LVTVYLVYEALEQGTISLSTPVDISDYPYHLTTNSEASNVPMEARNY-TVEQLLEATMVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F   M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDKMRAKLLEWGIQDATIVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
           +    +A D AI+   L +++PQ  +        +    I + N +L  M      IDG+
Sbjct: 179 EENKLSAYDVAIVARNLIRDYPQVLEITKKASSTFAGLEIHSTNSMLEGMPAYRGGIDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELIT----SFLEKKT 292
           KTG T  +G + V +   K   I+ VV+           R      L+     +F  +  
Sbjct: 239 KTGTTDKAGASFVGTTVEKGMRIITVVLNADQQDGNPYARFTATSSLLDYISANFTLQTV 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           +K  +T++   ++    K+  +    K   +  +++ +   S 
Sbjct: 299 VKKGETYKDSKVTVLDGKEDSVPAVAKSDIAVVQRVGSGTTSA 341


>gi|332297402|ref|YP_004439324.1| Serine-type D-Ala-D-Ala carboxypeptidase [Treponema brennaborense
           DSM 12168]
 gi|332180505|gb|AEE16193.1| Serine-type D-Ala-D-Ala carboxypeptidase [Treponema brennaborense
           DSM 12168]
          Length = 457

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 61/264 (23%), Positives = 121/264 (45%), Gaps = 29/264 (10%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++I++D     +   K  D+   PAS+TK++ +Y++F+ + + ++ L+  +P+   +   
Sbjct: 77  AAILVDTANGCILFEKNADDVIPPASMTKLVVMYVVFQEIAAGRISLSDVVPLPPESWAV 136

Query: 114 N----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           N     S ++L +    T E+ +L L   S ND + A  +++SGS   F   M+ + +K+
Sbjct: 137 NAPPNSSLMFLGQGQTVTLEELLLGLAVASGNDAAVAVADYVSGSVGAFVDRMNAEMEKL 196

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-KYFSIRKFRY--------- 219
           G+++T +   SG   +  +TT R+ A         +P+   K+ S R   Y         
Sbjct: 197 GLEHTRFVEPSGYS-ELNLTTPREFAAFARTYVNRYPEALEKFHSARSIAYPQEKNLAPW 255

Query: 220 -------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
                     +  + NKLL  +   DG+KTG+   SG+N+  +        +AV+M  P 
Sbjct: 256 HAGTGSQPPIVQQSTNKLLGVLPGCDGLKTGFIYESGYNLSLTAERGGTRFLAVMMRGPG 315

Query: 273 S------QERDQKALELITSFLEK 290
           S      + R + +  ++     +
Sbjct: 316 SGSAEGNEYRVKDSTTMMEWAFGR 339


>gi|322376423|ref|ZP_08050916.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. M334]
 gi|321282230|gb|EFX59237.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. M334]
          Length = 413

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 148/342 (43%), Gaps = 38/342 (11%)

Query: 31  MGKILF--LSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKM 83
           M KI+   L++ +I  AS + A+        +I ++ N  ++   K   +P   AS+TK+
Sbjct: 1   MKKIILTLLTLSVIGSASTVAAQDFNIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +T+Y+++E L++  + L+T + +S            S + ++ + Y T EQ + A +  S
Sbjct: 61  ITVYLVYEALENGSITLSTPVDISDYPYRLTTNSEASNVPMEARNY-TVEQLLEATLVSS 119

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DK 185
           AN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D+
Sbjct: 120 ANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDE 179

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIK 241
               +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+K
Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAHRGGFDGLK 239

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKTL 293
           TG T  +G + V +   K   ++ VV+           R      L+      F  +K +
Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIV 299

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           +    ++   +     K+  +    K   S  +++  ++  +
Sbjct: 300 QKGDAYQDSKVPVQDGKEDTVTAVAKDDISLVERVGNQSSKS 341


>gi|320538339|ref|ZP_08038220.1| serine-type D-Ala-D-Ala carboxypeptidase [Treponema phagedenis
           F0421]
 gi|320144838|gb|EFW36573.1| serine-type D-Ala-D-Ala carboxypeptidase [Treponema phagedenis
           F0421]
          Length = 478

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 65/265 (24%), Positives = 119/265 (44%), Gaps = 22/265 (8%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
                   S IV + +  Q+    + D    PASLTK++ +Y+  + + S ++ L+  + 
Sbjct: 86  PAPILAAQSVIVANADTGQLLYEYQADRKIPPASLTKLVAMYVAMQAIDSGEITLDQVVV 145

Query: 106 VSKTAATQN----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
             + +  +N     S L+L      T  + +  +   S ND + A    +SGS  KF   
Sbjct: 146 PPRESWAENIPPGSSLLFLGPNQQLTVSELLRGMAVVSGNDAAIALAHAVSGSVPKFVER 205

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-IRKFRYR 220
           MS   K +G+++T++   SGL ++N  TTARD A   ++  + +P+  + F  +++  Y 
Sbjct: 206 MSQAVKTLGLKHTVFTEPSGLSEEN-YTTARDFARFCLVYIREYPENLERFHALQELTYP 264

Query: 221 ---------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG-- 269
                    +      N LL K+   DG+KTG+   SGFNI  + +     I+AV++G  
Sbjct: 265 LSHNVKNLISITQPATNTLLGKLKGCDGLKTGFIYESGFNIALTCKRAGTRILAVILGGA 324

Query: 270 ----MPTSQERDQKALELITSFLEK 290
                     R++   +++      
Sbjct: 325 GKTIAQGRAIREKDGEKIMNWAFHN 349


>gi|321313677|ref|YP_004205964.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5]
 gi|320019951|gb|ADV94937.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5]
          Length = 443

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 72/314 (22%), Positives = 143/314 (45%), Gaps = 40/314 (12%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKY--------SSIVIDVNKNQMTGFKQDE 73
           + I++  QL+  ++ L++ +  +A    AK           ++I+I+ +  ++   K  +
Sbjct: 1   MNIKKCKQLLMSLVVLTLAVTCLAPMSKAKAASDPIDINASAAIMIEASSGKILYSKNAD 60

Query: 74  PRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKTAATQNPSKLYLKEKTYFTT 128
            R P AS+TKMMT Y++ E +   K+  +        V + +   + S + L++   +T 
Sbjct: 61  KRLPIASMTKMMTEYLLLEAIDQGKVKWDQTYTPDDYVYEISQDNSLSNVPLRKDGKYTV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-- 186
           ++   A    SAN  + A  E ++GSE KF   M+ KAK++G+ +  + NA+GL +K+  
Sbjct: 121 KELYQATAIYSANAAAIAIAEIVAGSETKFVEKMNAKAKELGLTDYKFVNATGLENKDLH 180

Query: 187 ------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNK 229
                          +A+D AIL   L  ++P+  +  SI K ++R        + N N 
Sbjct: 181 GHQPEGTSVNEESEVSAKDMAILADHLITDYPEILETSSIAKTKFREGTDDEMDMPNWNF 240

Query: 230 LLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS--QERDQKAL 281
           +L  +        +DG+KTG T ++G     +       ++ VV+    +    R  +  
Sbjct: 241 MLKGLVSEYKKATVDGLKTGSTDSAGSCFTGTAERNGMRVITVVLNAKGNLHTGRFDETK 300

Query: 282 ELITSFLEKKTLKH 295
           ++     +  ++K 
Sbjct: 301 KMFDYAFDNFSMKE 314


>gi|293365274|ref|ZP_06611991.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus oralis ATCC
           35037]
 gi|291316724|gb|EFE57160.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus oralis ATCC
           35037]
          Length = 413

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 78/335 (23%), Positives = 145/335 (43%), Gaps = 38/335 (11%)

Query: 31  MGKIL--FLSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           M KI+  F+++++   AS + A+        +I ++    ++   K  ++P   AS+TK+
Sbjct: 1   MKKIILSFMTLLVFGTASTVSAQEFDVAAKHAIAVEATTGKILYEKDANQPVEIASITKL 60

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +T+Y+++E L+   + L+T + +S            S + ++ + Y T EQ + A +  S
Sbjct: 61  VTVYLVYEALEQGTISLSTPVDISDYPYKLTTNSEASNVPMEARNY-TVEQLLEATMVSS 119

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DK 185
           AN  + A  E I+GSEK F   M  K  + G+Q+    N +GL+              D 
Sbjct: 120 ANSAAIALAEKIAGSEKDFVDKMRAKLLEWGIQDATIVNTTGLNNETLGDNIYPGSKKDD 179

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIK 241
               +A D AI+   L +++PQ  +        +    I + N +L  M      IDG+K
Sbjct: 180 ENKLSAYDVAIVARNLIRDYPQVLEITKKPTSTFAGLEIHSTNYMLEGMPAYRGGIDGLK 239

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELIT----SFLEKKTL 293
           TG T  +G + V +   K   I+ VV+           R      L+     +F  K  +
Sbjct: 240 TGTTDKAGASFVGTTVEKGMRIITVVLNADQQDTNPYARFTATSALLDYISANFALKTVV 299

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           +  + +    ++    K+  +    K   S  ++I
Sbjct: 300 QKGEAYNDSKVTVLDGKEDNVTAVAKSDISIVQRI 334


>gi|115523726|ref|YP_780637.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisA53]
 gi|115517673|gb|ABJ05657.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisA53]
          Length = 385

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 110/225 (48%), Gaps = 7/225 (3%)

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  +  T  T +  +  ++ +SAND++    E + GS   F+  M+  A+++GM  T Y 
Sbjct: 1   MGFRAGTQVTVDNALKMMMVKSANDMAVVLAEGVGGSIDGFSEQMNRAAQRLGMTQTNYV 60

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNI 237
           N +GL    Q+T+ARD AIL   +  + P+Y  +  I   R+  R+  N N+L+ +    
Sbjct: 61  NPNGLPADGQVTSARDLAILARAIIHDLPEYEYFVHIPAIRFGKRVTPNFNRLIGRYPGA 120

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQ 297
           DG+KTG+   SGFN+V S       ++A+V+G P+SQ R  KA++L+        L   Q
Sbjct: 121 DGMKTGFICASGFNLVASATRNGRRLIAIVLGAPSSQARALKAMQLLERGFGANQLSWLQ 180

Query: 298 THRK--DNLSSTS-----LKKSLMIKKLKRTYSQFKKIDAKAHST 335
                 DNL+        L+  +   K KR  S     D  A + 
Sbjct: 181 PALGSVDNLAPIDAAPPNLRDEMCGPKRKRPASDESAEDLIAGAA 225


>gi|307243700|ref|ZP_07525840.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492909|gb|EFM64922.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus
           stomatis DSM 17678]
          Length = 419

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 75/303 (24%), Positives = 138/303 (45%), Gaps = 27/303 (8%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASE---LHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-A 78
           Y ++  +++   L L ++M + A            S+IV D + N++   K  +   P A
Sbjct: 4   YRKKAYKVLAIGLCLPLLMQARAGAEQRFSDSYSRSAIVSDTDTNRIVYEKNADQVVPMA 63

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           SLTKMMTL + F+ +  KK+     + +  +   +  + + L      + E+ +  ++  
Sbjct: 64  SLTKMMTLLLTFDAISQKKVDYKDIVTILPSDVNRVGTNIKLTAGEQISLEELMKGMMIV 123

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK----------NQI 188
           SAND + A    +S +  KF   M+ KAK+IGM+NT++ N +GL                
Sbjct: 124 SANDAALAISHHVSTTYSKFVEDMNAKAKEIGMENTVFYNPNGLPTSINVGGKPVGVENK 183

Query: 189 TTARDQAILGILLRKNFP-QYYKYFSIRKFRYRNRIIT--NHNKLLNKMHNIDGIKTGYT 245
           T+ARD  +L   L   +P Q     ++  +    + I   N N LL  + N+DG+KTG+T
Sbjct: 184 TSARDVLVLSKYLYDKYPNQLTAITNMSSYVNPKKAINEENTNPLLPLIANVDGLKTGFT 243

Query: 246 RNSGFNIVTSLRYKD-------DPIVAVVMGMPTSQERDQKALE---LITSFLEKKTLKH 295
             +G+ +  S++          + ++ V +G  + + R   +      I +  + K L  
Sbjct: 244 GAAGYCLAYSMKIDKGNGNDSANRLIGVSLGASSKENRKLASYNTLVYINNHYKTKYLYK 303

Query: 296 QQT 298
           + T
Sbjct: 304 KNT 306


>gi|253701878|ref|YP_003023067.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacter sp.
           M21]
 gi|251776728|gb|ACT19309.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacter sp.
           M21]
          Length = 276

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 67/249 (26%), Positives = 113/249 (45%), Gaps = 15/249 (6%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEY 92
           ILF        AS   A P  S+ +I VN   +   +     R PASLTK+MT  I+ E 
Sbjct: 5   ILFAVAYYTDAASSPFAHPP-SAYLIQVN-GHIYKERNAHIRRPPASLTKIMTALIVME- 61

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
               +  L+  + VS+ AA +  S++ L+     T    + A +  SAND   A  +   
Sbjct: 62  ----RCKLDEVVVVSRGAARETGSRIGLRRGEKLTVRDLLAATLMASANDACRALADHAC 117

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           G+++ F + M+ +A+ + + NT + NA G       TTA D A+L     +  P + +  
Sbjct: 118 GNQRDFVVQMNARARALQLPNTRFTNACGHDSAGLYTTAHDLALLTEKAMQK-PLFAELV 176

Query: 213 SIRKFRYRN------RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           + ++ R R         + N N+L+ +     G+KTG T N+G  +V     ++  ++ V
Sbjct: 177 ARKEMRIRTLNSKRSYYLRNKNRLIGRYPGAIGVKTGTTPNAGQCLVAIAEREERKVLLV 236

Query: 267 VMGMPTSQE 275
           +M       
Sbjct: 237 IMHARNRWW 245


>gi|38142345|dbj|BAD00975.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
          Length = 413

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 74/341 (21%), Positives = 144/341 (42%), Gaps = 39/341 (11%)

Query: 33  KILFLSIIMISM---ASELHAK----PKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMM 84
           K +FL+++ +S+   AS + A+        +I ++ N  ++   K   +P   AS+TK++
Sbjct: 2   KKIFLTLLTVSLLGGASTVAAQDFNIAAKHAIAVEANTGKILYEKDATQPVEIASITKLL 61

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           T+Y+++E L++  + L+T + +S            S + ++ + Y T E+ + A +  SA
Sbjct: 62  TVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNVPMEARNY-TVEELLEATLVSSA 120

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKN 186
           N  + A  E I+GSEK F   M  K  + G+++    N +GL+              D  
Sbjct: 121 NSAAIALAEKIAGSEKDFVDRMRAKLLEWGIKDATVVNTTGLNNETLGDNIYPGSNKDDE 180

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIKT 242
              +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFDGITITSTNYMLEGMPAYRGGFDGLKT 240

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKTLK 294
           G T  +G + V +   K   ++ VV+           R      L+      F  +K ++
Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQ 300

Query: 295 HQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
               ++         K+  +           +++  ++  +
Sbjct: 301 QGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQS 341


>gi|322374431|ref|ZP_08048945.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C300]
 gi|321279931|gb|EFX56970.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C300]
          Length = 413

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 79/335 (23%), Positives = 145/335 (43%), Gaps = 38/335 (11%)

Query: 31  MGKIL--FLSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           M KI+  F+++ +   AS + A+        +I ++    ++   K  ++P   AS+TK+
Sbjct: 1   MKKIILSFMTLFVFGTASTVSAQEFDVAAKHAIAVEATTGKILYEKDANQPVEIASITKL 60

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +T+Y+++E L+   + L+T + +S            S + ++ + Y T EQ + A +  S
Sbjct: 61  VTVYLVYEALEQGTISLSTPVDISDYPYKLTTNSEASNVPMEARNY-TVEQLLEATMVSS 119

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DK 185
           AN  + A  E I+GSEK F   M  K  + G+Q+    N +GL+              D 
Sbjct: 120 ANSAAIALAEKIAGSEKDFVDKMRAKLLEWGIQDATIVNTTGLNNETLGDNIYPGSKKDD 179

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIK 241
               +A D AI+   L +++PQ  +        +    I + N +L  M      IDG+K
Sbjct: 180 ENKLSAYDVAIVARNLIRDYPQVLEITKKPTSTFAGLEIHSTNYMLEGMPAYRGGIDGLK 239

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ----ERDQKALELIT----SFLEKKTL 293
           TG T  +G + V +   K   I+ VV+           R      L+     +F  K  +
Sbjct: 240 TGTTDKAGASFVGTTVEKGMRIITVVLNADQQDTNLYARFTATSALLDYISANFALKTVV 299

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           +  +T+    ++    K+  +    K   S  ++I
Sbjct: 300 QKGETYNDSKVTVLDGKEDNVTAVAKSDISIVQRI 334


>gi|16077078|ref|NP_387891.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221307819|ref|ZP_03589666.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|221312141|ref|ZP_03593946.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221317074|ref|ZP_03598368.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221321337|ref|ZP_03602631.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Bacillus subtilis subsp. subtilis str. SMY]
 gi|585034|sp|P08750|DACA_BACSU RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA;
           Short=CPase; Short=DD-carboxypeptidase;
           Short=DD-peptidase; AltName: Full=Penicillin-binding
           protein 5; Short=PBP-5; Flags: Precursor
 gi|467400|dbj|BAA05246.1| D-alanine carboxypeptidase (PBP-5) [Bacillus subtilis]
 gi|2632277|emb|CAB11786.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 443

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 71/314 (22%), Positives = 143/314 (45%), Gaps = 40/314 (12%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKY--------SSIVIDVNKNQMTGFKQDE 73
           + I++  QL+  ++ L++ +  +A    AK           ++I+I+ +  ++   K  +
Sbjct: 1   MNIKKCKQLLMSLVVLTLAVTCLAPMSKAKAASDPIDINASAAIMIEASSGKILYSKNAD 60

Query: 74  PRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKTAATQNPSKLYLKEKTYFTT 128
            R P AS+TKMMT Y++ E +   K+  +        V + +   + S + L++   +T 
Sbjct: 61  KRLPIASMTKMMTEYLLLEAIDQGKVKWDQTYTPDDYVYEISQDNSLSNVPLRKDGKYTV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-- 186
           ++   A    SAN  + A  E ++GSE KF   M+ KAK++G+ +  + NA+GL +K+  
Sbjct: 121 KELYQATAIYSANAAAIAIAEIVAGSETKFVEKMNAKAKELGLTDYKFVNATGLENKDLH 180

Query: 187 ------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNK 229
                          +A+D A+L   L  ++P+  +  SI K ++R        + N N 
Sbjct: 181 GHQPEGTSVNEESEVSAKDMAVLADHLITDYPEILETSSIAKTKFREGTDDEMDMPNWNF 240

Query: 230 LLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS--QERDQKAL 281
           +L  +        +DG+KTG T ++G     +       ++ VV+    +    R  +  
Sbjct: 241 MLKGLVSEYKKATVDGLKTGSTDSAGSCFTGTAERNGMRVITVVLNAKGNLHTGRFDETK 300

Query: 282 ELITSFLEKKTLKH 295
           ++     +  ++K 
Sbjct: 301 KMFDYAFDNFSMKE 314


>gi|307708560|ref|ZP_07645025.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus mitis NCTC
           12261]
 gi|307615476|gb|EFN94684.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus mitis NCTC
           12261]
          Length = 413

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 80/335 (23%), Positives = 144/335 (42%), Gaps = 38/335 (11%)

Query: 31  MGKILF--LSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKM 83
           M KI+   LS+ +I  AS + A+        +I ++ N  ++   K   +P   AS+TK+
Sbjct: 1   MKKIILTLLSLSVIGSASTVAAQDFNIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +T+Y+++E L++  + L+T + +S            S + ++ + Y T EQ + A +  S
Sbjct: 61  ITVYLVYEALENGSITLSTPVDISDYPYKLTTNSEASNVPMEARNY-TVEQLLEATLVSS 119

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DK 185
           AN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D+
Sbjct: 120 ANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDE 179

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIK 241
               +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+K
Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLK 239

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKTL 293
           TG T  +G + V +   K   ++ VV+           R      L+      F  +K +
Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIV 299

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           +    ++         K+  +    K   S  +++
Sbjct: 300 QKGDAYQDSKAPVQDGKEDTVTAIAKDDISLIERV 334


>gi|168335230|ref|ZP_02693333.1| Serine-type D-Ala-D-Ala carboxypeptidase [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 377

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 71/320 (22%), Positives = 135/320 (42%), Gaps = 21/320 (6%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTK 82
           ++R I  +  I+ + +  + + +++        ++++    ++     ++     AS TK
Sbjct: 1   MKRGITAVA-IIVVCLSNMPVEAKIGTLGGKGVVLVEPESMRVLYGINENTQLPMASTTK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT  I  E       +L   + VS  AA   P  L LKE         + +L+ +S ND
Sbjct: 60  IMTAIIALE-----NGNLEDVVTVSANAAKAPPVDLKLKENEKQYLGDLLYSLMLQSHND 114

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            + A  E I GS ++F  +M+ KA ++G  NT ++  +GL  +   +T  D A++G    
Sbjct: 115 TAVAIAEHIGGSVEEFCEMMTTKANELGAVNTKFETPNGLDSEQHYSTPYDLALIGAYAL 174

Query: 203 KNFPQYYKYFSIRKFRYRNRIIT--------NHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
           KN P++ +  +        R +         N N  L++M   +GIKTG+T  +G+  V 
Sbjct: 175 KN-PKFVEIINTPYMNIPTRELEGAGKHQLQNKNGFLHRMPGANGIKTGFTSKAGYCFVG 233

Query: 255 SLRYKDDPIVAVVMG--MPTSQER-DQKALELITSFLEKKTLKH--QQTHRKDNLSSTSL 309
           S    +  ++ V +G      +ER       +I        +     +    DN++  + 
Sbjct: 234 SATKGNMTLIGVSLGNFGSAGKERKYTDVKTMIEHGFNNYKMYTLVDKEQILDNIAIKNG 293

Query: 310 KKSLMIKKLKRTYSQFKKID 329
           K+  +    K   S     D
Sbjct: 294 KEEEVKLVAKERVSIPLTAD 313


>gi|313887666|ref|ZP_07821348.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312846275|gb|EFR33654.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 456

 Score =  212 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 74/249 (29%), Positives = 123/249 (49%), Gaps = 14/249 (5%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S ++ D    Q+  G+  DE R  AS +K+++++++ + +Q  K+ LN ++ + K AA  
Sbjct: 96  SYLLGDYKSGQILEGYNLDEIRAMASTSKLVSIFVVLDKIQEGKISLNDEVEIDKEAAAL 155

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   LKE    T E+ I A +  S ND  TA G+ ++GS   F  +M++K   +G++N
Sbjct: 156 TGSSFKLKEGDKVTVEKLIEASMVVSGNDAITALGKHVAGSTDAFVKMMNDKCHDLGLKN 215

Query: 174 TIYKNASGLHDKN----QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNH 227
            +  N +GL +         T R+  +L   L K  P+  KY +I K     RN I  N 
Sbjct: 216 ALMVNPTGLTNYEILDYNKMTTREMFMLASELIKFHPEILKYTTIAKLEDPGRNFIEYNT 275

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSL-------RYKDDPIVAVVMGMPTSQERDQKA 280
           N +L  +  +DG+KTGYT  +G  ++ +        + KD  ++ +  G  +  ER    
Sbjct: 276 NPVLGIVPEVDGLKTGYTNAAGRCVILTGLEKGVDEKSKDMRLIGITTGSNSDFERFVAC 335

Query: 281 LELITSFLE 289
             LIT   E
Sbjct: 336 KRLITKGFE 344


>gi|331266509|ref|YP_004326139.1| D-alanyl-D-alanine carboxypeptidase,penicillin-binding protein 3
           [Streptococcus oralis Uo5]
 gi|326683181|emb|CBZ00799.1| D-alanyl-D-alanine carboxypeptidase,penicillin-binding protein 3
           [Streptococcus oralis Uo5]
          Length = 413

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 78/335 (23%), Positives = 145/335 (43%), Gaps = 38/335 (11%)

Query: 31  MGKIL--FLSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           M KI+  F+++++   AS + A+        +I ++    ++   K  ++P   AS+TK+
Sbjct: 1   MKKIILSFMTLLVFGTASTVSAQEFDVAAKHAIAVEATTGKILYEKDANQPVEIASITKL 60

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +T+Y+++E L+   + L+T + +S            S + ++ + Y T EQ + A +  S
Sbjct: 61  VTVYLVYEALEQGTISLSTPVDISDYPYKLTTNSEASNVPMEARNY-TVEQLLEATMVSS 119

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DK 185
           AN  + A  E I+GSEK F   M  K  + G+Q+    N +GL+              D 
Sbjct: 120 ANSAAIALAEKIAGSEKDFVDKMRAKLLEWGIQDATIVNTTGLNNETLGDNIYPGSKKDD 179

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIK 241
               +A D AI+   L +++PQ  +        +    I + N +L  M      IDG+K
Sbjct: 180 ENKLSAYDVAIVARNLIRDYPQVLEITKKPTSTFAGLEIHSTNYMLEGMPAYRGGIDGLK 239

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELIT----SFLEKKTL 293
           TG T  +G + V +   K   I+ VV+           R      L+     +F  K  +
Sbjct: 240 TGTTDKAGASFVGTTVEKGMRIITVVLNADQQDTNPYARFTATSALLDYISANFALKTVV 299

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           +  + +    ++    K+  +    K   S  ++I
Sbjct: 300 QKGEAYNDSKVTVLDGKEDNVTAVAKSDISIVQRI 334


>gi|291547442|emb|CBL20550.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. SR1/5]
          Length = 429

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 80/253 (31%), Positives = 126/253 (49%), Gaps = 21/253 (8%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             +++++DVN   +   K  D   YPAS+TK++T  +  E L +K     T I VS+ A 
Sbjct: 85  AQAAVLMDVNTEAVLYSKNADTQLYPASITKILTTLLACENLNAK-----TNITVSEKAS 139

Query: 111 --ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
              T   S +Y      FT +Q ++A++ +SAN++S A  E +SGS KKFA LM+ +AK 
Sbjct: 140 TSVTAGDSSIYAAPGEKFTRDQALMAVMLQSANEMSVAIAEEVSGSVKKFAELMNWRAKL 199

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN------- 221
            G +NT + N +GL D+N  TTA D A +      N P + +Y + R +           
Sbjct: 200 FGCKNTHFNNPNGLPDENHYTTASDMAKIAKSAWLN-PLFRRYCTKRYYEIPPTNKFAEA 258

Query: 222 RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           R + NH+K++         + G KTGYT  SG  +VT  +  +  +VAV++   ++    
Sbjct: 259 RQLLNHHKMMKNGEYYYEGVRGGKTGYTDASGNTLVTYCKRGNITLVAVILNSTSAANAY 318

Query: 278 QKALELITSFLEK 290
                L     E 
Sbjct: 319 SDTASLFNYGFEN 331


>gi|189218825|ref|YP_001939466.1| D-alanyl-D-alanine carboxypeptidase [Methylacidiphilum infernorum
           V4]
 gi|189185683|gb|ACD82868.1| D-alanyl-D-alanine carboxypeptidase [Methylacidiphilum infernorum
           V4]
          Length = 241

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 62/240 (25%), Positives = 100/240 (41%), Gaps = 16/240 (6%)

Query: 57  IVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEY-LQSKKLHLNTQIPVSKTAATQN 114
           ++ D   +++   K D+ P  PAS TK+MT  +++E             + + K      
Sbjct: 1   MLYDATTHKVLFAKNDDVPFAPASTTKLMTALLVYEKTGFKGD------VRIKKEDTLVQ 54

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           PS + L      +  Q +  L+  S ND + A     SGS +KF   M+ KA+ +G  NT
Sbjct: 55  PSHVPLIAGEVISVNQLVEELLIGSCNDAALALARACSGSVEKFVEEMNQKAQSLGCVNT 114

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN----RIITNHNKL 230
            + N  GL +  Q TTARD   +     K  P   +    RK  ++N    R++ NHN+L
Sbjct: 115 HFVNPHGLFEPGQYTTARDLMRIFQAAIK-IPAINQICQTRKIHFQNGGISRVMYNHNRL 173

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L +   +   KTG+TR S      +       +   ++  P        A  L      +
Sbjct: 174 LGRYMGMGPAKTGWTRISLHTYAAACERNGHTLYLTLLHSPDKWY---DARLLFDYGFAQ 230


>gi|325108452|ref|YP_004269520.1| serine-type D-Ala-D-Ala carboxypeptidase [Planctomyces brasiliensis
           DSM 5305]
 gi|324968720|gb|ADY59498.1| Serine-type D-Ala-D-Ala carboxypeptidase [Planctomyces brasiliensis
           DSM 5305]
          Length = 302

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 65/278 (23%), Positives = 111/278 (39%), Gaps = 31/278 (11%)

Query: 34  ILFLSIIMISMASEL---------HAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKM 83
           +L   II  ++A ++          A    +   ID    + +   K  E   PAS TK+
Sbjct: 8   LLSFLIIAPALAEDVVLLERYDGPPAVTCEAWTAIDAETGEMIVSHKAGEVLRPASTTKI 67

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT Y++F         +   +  S+ A     S   ++E    +  + +  L+  S ND 
Sbjct: 68  MTSYLVFNLAAESPEVMEELVTFSRRADKTGGSSSTVREGEQVSVRELLYGLLLPSGNDA 127

Query: 144 STAFGEFI---------SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           S A  E             + ++F   M+ +A ++GM +T Y+N  GL +   +TTA D 
Sbjct: 128 SVALAEHFGDRLSPEGEGTAYERFVAAMNRQAAELGMNDTHYENTHGLDNVKHVTTAADM 187

Query: 195 AILGILLRKNFPQYYKYFSIRKFRY---------RNRIITNHNKLLNKMHNIDGIKTGYT 245
           A L     +  P + K     ++R          R     N NKLL   +   G+KTG+T
Sbjct: 188 ARLAQAAMQ-IPDFRKVVRTAEYRTAVTQEDGEQRVLEWRNTNKLLP--YGYLGVKTGWT 244

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
             +G  +V+  +     ++ VV+       R   +  L
Sbjct: 245 TMAGACLVSCSQRDGRELILVVLKSSCRDSRFTDSRNL 282


>gi|254504922|ref|ZP_05117073.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii
           DFL-11]
 gi|222440993|gb|EEE47672.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii
           DFL-11]
          Length = 374

 Score =  212 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 66/267 (24%), Positives = 118/267 (44%), Gaps = 7/267 (2%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
           + L+  ++ + +E        +++ +     +   K  D P  P +L K+MT   +F+ L
Sbjct: 1   MLLAFAIVGVQAEQLTTKAPKALLYEPASGTVLFAKDADVPFAPGALVKVMTAATVFKAL 60

Query: 94  QSKKLHLNTQIPVSKTAATQNPS------KLYLKEKTYFTTEQGILALITRSANDVSTAF 147
              +L  +    VS+ A     +       ++   K+  + E  +  L+  + ND +   
Sbjct: 61  SDGELTQDQLCTVSEHAWRTGGAPSGRGATMFAAIKSEISVEDLLKGLLVHNGNDSAIIL 120

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E + GSE  FA  M+  A +IGM N+ + N +G  +    TT RDQ  LG  L +   +
Sbjct: 121 AECLDGSETAFADRMNALAAEIGMANSNFGNPTGYEEAVSTTTVRDQVRLGEYLVEEHTE 180

Query: 208 YYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            Y  F+I +F + N    N N LL ++ N+DG+  G     G++ + S+      I+A V
Sbjct: 181 RYSMFAIPEFTWNNIFQRNKNPLLGEIRNLDGLGGGAHSEDGYSGLGSIDRNGRRIIAAV 240

Query: 268 MGMPTSQERDQKALELITSFLEKKTLK 294
            G+ +   R     E+     E   +K
Sbjct: 241 AGLTSDNHRLAALKEIFEGTWEFYAVK 267


>gi|89896454|ref|YP_519941.1| hypothetical protein DSY3708 [Desulfitobacterium hafniense Y51]
 gi|89335902|dbj|BAE85497.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 428

 Score =  212 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 78/282 (27%), Positives = 125/282 (44%), Gaps = 25/282 (8%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKY---------SSIVIDVNKNQMTGFKQ-DEPRYP 77
           ++L+  +     ++++ A  +   P            +I+ID+   Q    K  D P  P
Sbjct: 6   LRLITVLFTALAMLLNFAVPVFGSPDKVPVPEISSEGAILIDITTGQTLFAKNPDHPYEP 65

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           AS TK+M+  I  E     K +LN  +    +   Q     +++YL+     T E  + A
Sbjct: 66  ASTTKIMSALIALE-----KGNLNDLVTAGPSVLDQELTQGTRIYLEPGEQVTLENLLYA 120

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           L+  SAND + A  E I G  + F  LM+ KAK+IG  NT +KN SGL     +TTARD 
Sbjct: 121 LLLNSANDAAVAIAEHIGGDIQGFTDLMNAKAKEIGALNTSFKNPSGLSADGHLTTARDL 180

Query: 195 AILGILLRKNFPQYYKYFSIR-KFRYRNR-----IITNHNKLLNKMHNIDGIKTGYTRNS 248
           A++     +N P +  Y   + K   RNR      + N N+ +     + G+KTGYT ++
Sbjct: 181 AMIARFAYQN-PVFRDYVKTKTKIIPRNRENIPTEMYNINEFIWTEPTVTGMKTGYTSSA 239

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           G   V +       ++ VV+  P+         +L       
Sbjct: 240 GNTYVATAERDGRALLGVVLKSPSKTSIYTDMRKLFEYGFTN 281


>gi|303239548|ref|ZP_07326074.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acetivibrio
           cellulolyticus CD2]
 gi|302592926|gb|EFL62648.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acetivibrio
           cellulolyticus CD2]
          Length = 416

 Score =  212 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 79/303 (26%), Positives = 146/303 (48%), Gaps = 21/303 (6%)

Query: 21  SIYIQRNIQLMGKILFL----SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR- 75
            I I+    L+  I+ L    S+  +S A E+      S+I+++  + Q+   K+ + R 
Sbjct: 4   RILIKVQCFLVLIIIVLINGISVFAVSEAPEIK---GVSAILVESKRGQVLFEKESKSRL 60

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           + +S  KMMT  +  E + S    ++T + +SK AA    S L L+    ++ +  +  +
Sbjct: 61  HISSANKMMTALLALEKVGS---KIDTPVTISKNAAAAQGSILNLEVGGKYSIQDLVYTV 117

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I  SAND +TA  E++ G  + F  +M++KA+++ M +T + N +GL+D+ Q TTA D A
Sbjct: 118 ILTSANDSATALAEYVGGDFQSFVNIMNDKARELKMTDTNFTNPTGLYDEAQYTTAYDLA 177

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNR----IITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           +L      N P +   FS +   + N+    +ITN N L    + IDG KTGY       
Sbjct: 178 VLTRFALSN-PYFEHMFSSQAKLWTNQGKVEVITNSNNLFWSYNGIDGGKTGYNEVERQT 236

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT----LKHQQTHRKDNLSST 307
            +T+    +  ++++V+  P  +     + +L+            +K  QT +  ++   
Sbjct: 237 AITTATRDNLRVISIVLDSP-EKSVYDDSTKLLDYGFNNYKTGVLVKKDQTLKSISVGDK 295

Query: 308 SLK 310
            + 
Sbjct: 296 PID 298


>gi|38142311|dbj|BAD00958.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142319|dbj|BAD00962.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|332202728|gb|EGJ16797.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           GA41317]
          Length = 413

 Score =  212 bits (539), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 142/343 (41%), Gaps = 33/343 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTK 82
           +++    +  +  L     ++A +     K+ +I ++ N  ++   K   +P   AS+TK
Sbjct: 1   MKKIFLTLLTVSLLGGASTAVAQDFTIAAKH-AIAVEANTGKILYEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y+++E L++  + L+T + +S            S + ++ + Y T E+ + A +  
Sbjct: 60  LITAYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKT 292
           KTG T  +G + V +   K   ++ VV+           R      L+      F  +K 
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKI 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           ++    ++         KK  +           +++  ++  +
Sbjct: 299 VQQGDAYQDSKAPVQDGKKDTVTAVAPEDIYLIERVGNQSSQS 341


>gi|307706421|ref|ZP_07643231.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus mitis SK321]
 gi|307618208|gb|EFN97365.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus mitis SK321]
          Length = 413

 Score =  212 bits (539), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 80/342 (23%), Positives = 146/342 (42%), Gaps = 38/342 (11%)

Query: 31  MGKILF--LSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKM 83
           M KI+   LS+ +I  AS + A+        +I ++ N  ++   K   +P   AS+TK+
Sbjct: 1   MKKIILTLLSLSVIGSASTVAAQDFNIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +T+Y+++E L++  + L+T + +S            S + ++ + Y T EQ + A +  S
Sbjct: 61  ITVYLVYEALENGSITLSTPVDISDYPYKLTTNSEASNVPMEARNY-TVEQLLEATLVSS 119

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DK 185
           AN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D 
Sbjct: 120 ANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSRKDD 179

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIK 241
               +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+K
Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLK 239

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKTL 293
           TG T  +G + V +   K   ++ VV+           R      L+      F  +K +
Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIV 299

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           +    ++         K+  +    K   +  +++  ++  T
Sbjct: 300 QKGDAYQDSKAPVQDGKEDAVTAVAKDDITLIERVGGQSSQT 341


>gi|312622507|ref|YP_004024120.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202974|gb|ADQ46301.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 451

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 69/255 (27%), Positives = 115/255 (45%), Gaps = 25/255 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I+++ +  Q+   K      +PAS TK++T  +      S + +LN    VS  A 
Sbjct: 43  AKSAILVEAHTGQILFEKNSNLTCFPASTTKVLTALVAI----SYEHNLNKIFKVSSKAT 98

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
              P  S  YL      + +  + A++  SAND +    E I+G+   F   M+  AK I
Sbjct: 99  MIEPGSSSYYLNPGETISFQDLLYAMLLISANDAANVIAENIAGNIPAFVEKMNQYAKSI 158

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-------- 221
           G +N+ + N +GLH     TTA D +++     +N     K FS  ++R           
Sbjct: 159 GAENSHFVNPNGLHSPQHYTTAYDLSLIARQAYQNEI-LRKIFSTVEYRITTASMHKKPE 217

Query: 222 -RIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
            +II N NKLL K          GIKTGYT  +   ++ S +  +  ++AV++   +S++
Sbjct: 218 WQIIYNINKLLRKNSKYYYPYATGIKTGYTAQAKRCLIASAKKDNIELIAVIL---SSED 274

Query: 276 RDQKALELITSFLEK 290
               A++L       
Sbjct: 275 AFSDAIKLFNYGFNN 289


>gi|196231311|ref|ZP_03130170.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chthoniobacter flavus
           Ellin428]
 gi|196224647|gb|EDY19158.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chthoniobacter flavus
           Ellin428]
          Length = 295

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 65/254 (25%), Positives = 119/254 (46%), Gaps = 14/254 (5%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
              +A  +      S+I++D    ++      D+ R  AS  K++T  I+ E   +  L 
Sbjct: 48  AFPVADGVPKITAGSAILLDAKTGKIIFEMNADQRRPVASTQKLLTSLIVAE---TGDLD 104

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
               +  S T A   P+ LY+K    ++    +  L+  S NDV+ A     +GS + FA
Sbjct: 105 HKVHVEASDTWA--EPTMLYIKPGNVYSRYDFLNVLLVHSMNDVARALARDNAGSLENFA 162

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             M+ KA ++GM+N+ + N +GL    Q +TARD A + +   +N P        +   +
Sbjct: 163 ARMNAKASELGMRNSNFVNPNGLPIPGQYSTARDMAQVALAAYRN-PIIRGIVCQKSVTW 221

Query: 220 -----RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                R R+    N++L +    +G+KTGYT  +G  +++S  +    ++AVV+G   ++
Sbjct: 222 HYNDGRVRVFETTNQVLKRYPLCNGMKTGYTEAAGHCLISSASHNGRDVIAVVLG--DNK 279

Query: 275 ERDQKALELITSFL 288
                + +L+   L
Sbjct: 280 NIWNDSYKLLAFGL 293


>gi|307704894|ref|ZP_07641785.1| penicillin-binding protein 3 [Streptococcus mitis SK597]
 gi|307621508|gb|EFO00554.1| penicillin-binding protein 3 [Streptococcus mitis SK597]
          Length = 413

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 75/329 (22%), Positives = 139/329 (42%), Gaps = 38/329 (11%)

Query: 31  MGKILF--LSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKM 83
           M KI+   LS+ +I  AS + A+        +I ++ N  ++   K   +P   AS+TK+
Sbjct: 1   MKKIILTLLSLSVIGSASTVAAQDFNIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +T+Y+++E L++  + L+T + +S            S + ++ + Y T E+ + A +  S
Sbjct: 61  LTVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNVPMEARNY-TVEELLEATLVSS 119

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DK 185
           AN  + A  E I+GSEK F  +M  K  + G+++    N +GL+              D 
Sbjct: 120 ANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIKDATVVNTTGLNNETLGDNIYPGSNKDD 179

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIK 241
               +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+K
Sbjct: 180 ENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLK 239

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKTL 293
           TG T  +G + V +   K   ++ V++           R      L+      F  +K +
Sbjct: 240 TGTTDKAGESFVGTTVEKGMRVITVILNADHQDNNPYSRFTATSSLMDYISSTFTLRKIV 299

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLKRTY 322
           +    ++   +     K+  +        
Sbjct: 300 QQGDAYQDSKVPVQDGKEDTVTAVAPEDI 328


>gi|238852512|ref|ZP_04642924.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus gasseri
           202-4]
 gi|238834859|gb|EEQ27084.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus gasseri
           202-4]
          Length = 308

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 65/300 (21%), Positives = 127/300 (42%), Gaps = 35/300 (11%)

Query: 25  QRNIQLMGKILFLSIIMI---------SMASELHAKPK----YSSIVIDVNKNQMTGFKQ 71
           ++N   +  I+ ++I  +         SM S  HA        S++ ID     +   K 
Sbjct: 9   KKNFLWIIGIVVIAICFLLWKNNFGPNSMPSNYHANQVDLNVKSAVAIDAKNGNVIYAKN 68

Query: 72  DEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP----SKLYLKEKTYF 126
                  AS+TK++T Y+  + ++ KK+  +T +  ++           + + L     +
Sbjct: 69  ANQSLPIASMTKLLTAYLTLKAIKEKKISWDTTVSPTQEIINLGSNPDYASVPLNLGQKY 128

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK- 185
           T ++   A + +SAN+ +      +SG+E  F   M  +A K  + N  +    GL +K 
Sbjct: 129 TVKELYDAALIKSANNAARMLAIAVSGNETNFLNQMRQQANKWKLHNVKFVTVDGLPEKK 188

Query: 186 ----------NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
                         +A D AI+   L  ++P+      + K  +RN ++TN NK+LN + 
Sbjct: 189 KNFLGMTTTIENKMSANDMAIIARKLVTDYPEVLNTTKVAKTYFRNTLMTNSNKMLNGLS 248

Query: 236 N------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           +      +DG+KTG T  +G     ++   +  ++ V++G     ER  +  +L+     
Sbjct: 249 DYDPNYPVDGLKTGTTDGAGSCFTCTVDKNNKRVITVILGAQNDNERFSETKKLLNYSFN 308


>gi|15902820|ref|NP_358370.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae R6]
 gi|116516506|ref|YP_816254.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae D39]
 gi|1620468|emb|CAA67776.1| D,D-carboxypeptidase [Streptococcus pneumoniae]
 gi|15458372|gb|AAK99580.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae R6]
 gi|116077082|gb|ABJ54802.1| penicillin-binding protein 3/D-alanyl-D-alanine carboxypeptidase
           [Streptococcus pneumoniae D39]
          Length = 413

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 145/343 (42%), Gaps = 33/343 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTK 82
           +++    +  +  L  +  ++A +     K+ +I ++ N  ++   K   +P   AS+TK
Sbjct: 1   MKKIFLTLLTVSLLGGVSTAVAQDFTIAAKH-AIAVEANTGKILYEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S            S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKT 292
           KTG T  +G + V +   K   ++ VV+           R      L+      F  +K 
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKI 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           ++    ++         K+  +I          +++  ++  +
Sbjct: 299 VQQGDAYQDSKAPVQDGKEDTVIAVAPEDIYLIERVGNQSSQS 341


>gi|312862634|ref|ZP_07722875.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           vestibularis F0396]
 gi|311101894|gb|EFQ60096.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           vestibularis F0396]
          Length = 417

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 80/343 (23%), Positives = 148/343 (43%), Gaps = 41/343 (11%)

Query: 34  ILFLSIIMISMASELHAK--------PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMM 84
           I+ +++I+I +A+   A+            +I I+    ++   K        AS+TK++
Sbjct: 9   IIMITLILIGLATPALAQEQTDDFNVAAKHAIAIETTTGKVLYEKDATTPDGVASMTKIL 68

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           T Y++++ +   K++ +T++ +S            S + L  +  +T +Q + A +  SA
Sbjct: 69  TAYMVYKAVDQGKINWDTEVDISDYPFNLTVDSEVSNIPLDSR-KYTVKQLLDATLISSA 127

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HDKN 186
           N  + A  E ISG+E  F   M+ + K+ G+ +    NASGL               D  
Sbjct: 128 NSAAIALAEKISGTESAFVDTMTAQLKEWGITDAKLFNASGLNNKYLGDNRYPGSKPDDE 187

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNHNKLL----NKMHNIDGIK 241
              +A D AI+   L K++PQ  +     +  +  +  +T HN +L    N    +DG+K
Sbjct: 188 NTMSALDVAIIADHLIKDYPQVLEITKQTETDFEGDNKLTTHNYMLEGQDNYREGVDGLK 247

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVM----GMPTSQERDQKALELI---TSFLEKKTLK 294
           TG T  +G + V         ++ +VM    G      R     EL+   T   E KTL 
Sbjct: 248 TGTTELAGASFVAHSNEHGMSLITIVMNADNGGEDEAARFTATNELLDYVTQNWEIKTLN 307

Query: 295 -HQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
              Q  +K+++         +  KL+      +KI++K  + +
Sbjct: 308 TKGQIVKKNDIKVADRDSQTISAKLESDLIVVQKINSKNDAVK 350


>gi|222529246|ref|YP_002573128.1| serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456093|gb|ACM60355.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 451

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/255 (27%), Positives = 115/255 (45%), Gaps = 25/255 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I+++ +  Q+   K      +PAS TK++T  +      S + +LN    VS  A 
Sbjct: 43  AKSAILVEAHTGQILFEKNSNLTCFPASTTKVLTALVAI----SYEHNLNKIFKVSSKAT 98

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
              P  S  YL      + +  + A++  SAND +    E ISG+   F   M+  AK I
Sbjct: 99  MIEPGSSSYYLNPGETISFQDLLYAMLLISANDAANVIAENISGNIPAFVEKMNQYAKSI 158

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-------- 221
           G +N+ + N +GLH     TTA D +++     +N     K FS  ++R           
Sbjct: 159 GAENSHFVNPNGLHSPQHYTTAYDLSLIARQAYQNEI-LRKIFSTVEYRITTASMHKKPE 217

Query: 222 -RIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
            +II N NKLL K          GIKTGYT  +   ++ S +  +  ++AV++   +S++
Sbjct: 218 WQIIYNINKLLRKNSKYYYPYATGIKTGYTAQAKRCLIASAKKDNIELIAVIL---SSED 274

Query: 276 RDQKALELITSFLEK 290
               A++L       
Sbjct: 275 AFSDAIKLFNYGFNN 289


>gi|163813991|ref|ZP_02205384.1| hypothetical protein COPEUT_00143 [Coprococcus eutactus ATCC 27759]
 gi|158450685|gb|EDP27680.1| hypothetical protein COPEUT_00143 [Coprococcus eutactus ATCC 27759]
          Length = 425

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 67/301 (22%), Positives = 118/301 (39%), Gaps = 23/301 (7%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++++ID     +   K  +   P AS TK++T  +  E       +L   + VS  AA
Sbjct: 64  AKNAVLIDGETGDILYEKNADAHRPNASTTKILTCILALECG-----NLEDTVAVSSYAA 118

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            Q   +L  +E   +T E  + A++  S ND +    E I GS + FA +M+ KA++IG 
Sbjct: 119 KQPEVRLGAQEGESYTLEDMLYAMMLESYNDTAVMIAEHIGGSMEVFADMMNRKAREIGC 178

Query: 172 QNTIYKNASGLHDKN----QITTARDQAILGILLRKNFPQ---YYKYFSIRKFRY----- 219
            +T +   +GL  ++      T+A D A +        P+   + K        +     
Sbjct: 179 HSTYFITPNGLDAQDESGGHGTSADDLARIMRYCILVSPERDMFLKITQSSSHTFSEKSG 238

Query: 220 -RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM---PTSQE 275
            R     NHN  LN        KTG+T ++G+  V +        +  ++G         
Sbjct: 239 SRTFSCVNHNAFLNMSSEALSGKTGFTCDAGYCYVGAANKNGHTYIWSLLGCGWPGNKTY 298

Query: 276 RDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           + + +  L++   E             N++     KS     +  T      I A+A  T
Sbjct: 299 KWKDSKTLLSYAGEHAQYTELSAPESPNVTVNYSSKSAKPGNI-CTKCNLSGIVAEAGDT 357

Query: 336 Q 336
           +
Sbjct: 358 E 358


>gi|157150235|ref|YP_001450989.1| penicillin-binding protein 3 [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075029|gb|ABV09712.1| penicillin-binding protein 3 [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 412

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 78/325 (24%), Positives = 152/325 (46%), Gaps = 32/325 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
           +++ I L+   LF S   +  A +     K ++I  DVN  ++   K+   P    SLTK
Sbjct: 1   MKKIIVLLFTCLFCSFCTLVSADDFDVAAK-NAIAFDVNTGKILYEKEATTPVPIGSLTK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           +++ Y++++ ++++K+ +++Q+ +S+ A       + S L L + +Y + E+ + A +  
Sbjct: 60  LLSAYLVYDAIKAEKITMDSQVEISEYALKLTTNYDISNLPLDKGSY-SVEELLEASLIA 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           +AN  + A  E I+GSEKKF  LM  K K+ G+ +    N++GL+              D
Sbjct: 119 NANSATIALAEKIAGSEKKFVDLMKAKLKEWGISDAKIVNSTGLNNSHLGDNIYPNSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
           +    +A D A++   L K++PQ         F +    + + N +L  M      +DG+
Sbjct: 179 EENQLSAYDMALISYHLIKDYPQVLNITEKTSFNFDGLEVNSSNYMLKDMPSYRKGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-------DQKALELITSFLEKKTL 293
           KTG +   G + + S   +D  ++ VV+ +  ++E            ++ I +     TL
Sbjct: 239 KTGISDQGGLSFIASANERDMRLITVVLNVENAEEDIKALFLATASIMDYIANNFVVTTL 298

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKL 318
             + T  +D+  S        IK +
Sbjct: 299 AEKGTPYEDSHISVINGSEDQIKVV 323


>gi|255524149|ref|ZP_05391109.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           carboxidivorans P7]
 gi|255512134|gb|EET88414.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           carboxidivorans P7]
          Length = 358

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 125/263 (47%), Gaps = 13/263 (4%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +I +D     +   K+     P AS TK+MT  +  +Y       L  +I VS  AA   
Sbjct: 30  AIALDSKSKVVLYEKKAYTLVPMASTTKIMTTLVAIKYGD-----LERKIEVSGKAAGIR 84

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S +  K+    + ++ +  L+ RS ND + A  E +SGS ++F  LM+  A +IG+ NT
Sbjct: 85  GSTVGFKKGEKISLKELLYGLMLRSGNDAAIAIAEGVSGSVEEFVQLMNEYASEIGVLNT 144

Query: 175 IYKNASGLHDKNQITTARDQAILGILL--RKNFPQYYKYFSIRKFRYR-NRIITNHNKLL 231
            + +  GL  ++  TTA D A++       K F        +    Y   R   N NK+L
Sbjct: 145 HFHSPHGLDYEDHYTTAYDLALITAKAKEIKLFNDIVSSKDVDGKTYNFTRSYHNINKIL 204

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
            ++   +G+KTGYT  +G  +VTS + + + ++ VV+     +ER ++  ++     +  
Sbjct: 205 WQLPEANGVKTGYTGKAGKCLVTSSKVQGNDVIVVVLNC---RERWKETKKIYDYVNKNY 261

Query: 292 TLKHQQTHRKDNLSSTSLKKSLM 314
             K +   + +N  S +L K ++
Sbjct: 262 QFK-RIFSKGENAGSINLHKDVL 283


>gi|322517678|ref|ZP_08070541.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           vestibularis ATCC 49124]
 gi|322123666|gb|EFX95258.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           vestibularis ATCC 49124]
          Length = 422

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 82/343 (23%), Positives = 149/343 (43%), Gaps = 41/343 (11%)

Query: 34  ILFLSIIMISMASELHAK--------PKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMM 84
           I+ +++I+I + +   A+            +I I+    ++   K    P   AS+TK++
Sbjct: 14  IIMITLILIGLTTPALAQDQTDDFNVAAKHAIAIETTTGKVLYEKDATTPNGVASMTKIL 73

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           T Y++++ +   K++ +T++ +S            S + L  +  +T +Q + A +  SA
Sbjct: 74  TAYMVYKAVDQGKINWDTEVNISDYPFNLTVDSEVSNIPLDSR-KYTVKQLLDATLISSA 132

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HDKN 186
           N  + A  E ISG+E  F   M+ + K+ G+ +    NASGL               D  
Sbjct: 133 NSAAIALAEKISGTESAFVDTMTAQLKEWGITDAKLFNASGLNNKYLGDNRYPGSKPDDE 192

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNHNKLL----NKMHNIDGIK 241
              +A D AI+   L K++PQ  +     +  + R+  +T HN +L    N    +DG+K
Sbjct: 193 NTMSALDVAIIADHLIKDYPQVLEITKQTETDFERDNKLTTHNYMLEGQDNYREGVDGLK 252

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVM----GMPTSQERDQKALELI---TSFLEKKTLK 294
           TG T  +G + V         ++ VVM    G      R     EL+   T   E KTL 
Sbjct: 253 TGTTELAGASFVAHSNEHGMSLITVVMNADNGGEDEAARFTATNELLDYVTQNWEIKTLN 312

Query: 295 -HQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
              Q  +K+++         +  KL+      +KI++K  + +
Sbjct: 313 TKGQIVKKNDIKVADGDSQTISAKLESDLIVVQKINSKNDAVK 355


>gi|160882047|ref|YP_001561015.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           phytofermentans ISDg]
 gi|160430713|gb|ABX44276.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           phytofermentans ISDg]
          Length = 516

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 71/286 (24%), Positives = 129/286 (45%), Gaps = 24/286 (8%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
               E++A    ++IV++ +   +   K   +  YPAS+TK++T  +  E       +LN
Sbjct: 51  PTGPEVYAD---AAIVMEASTGLILYEKDIYDKHYPASITKILTTLLAIE-----NCNLN 102

Query: 102 TQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKK 157
             + +S  A      N S++ L E    + +  + A++  SAN+VS   GE ++ GS   
Sbjct: 103 ETMTMSHAAEWDVDFNSSRIGLVEGESLSLKDALYAVMLESANEVSFGVGEHVAKGSMTD 162

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F  +M+ +AK++G  N+ + N +GLHD N  T A D A++        P++      R +
Sbjct: 163 FTAMMNARAKELGCVNSNFVNPNGLHDDNHYTCAYDMALISRAAI-MLPEFRTITGTRTY 221

Query: 218 RYR------NRIITNHNKLLNK---MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                     R + NH++ + K        G KTG T  +   +VT        ++AVV+
Sbjct: 222 TIPATNKNVARPLANHHRFIRKTSNYDGAIGGKTGGTTEAKTTLVTYAERNGLTLIAVVL 281

Query: 269 GMPTSQERDQKALELITSFLEKKTL-KHQQTHRKDNLSSTSLKKSL 313
            + T     +   +++    +   L + + T   +N + TSL K  
Sbjct: 282 HVDTGLHAYEDTAKILDFAFDNYALYRIEDTEGVNNSAFTSLFKDF 327


>gi|291482380|dbj|BAI83455.1| penicillin-binding protein 5 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 443

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/314 (22%), Positives = 143/314 (45%), Gaps = 40/314 (12%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKY--------SSIVIDVNKNQMTGFKQDE 73
           + I++  QL+  ++ L++ +  +A    AK           ++I+I+ +  ++   K  +
Sbjct: 1   MNIKKCKQLLMSLVVLTLAVTCLAPMSKAKAASDPIDINASAAIMIEASSGKILYSKNAD 60

Query: 74  PRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKTAATQNPSKLYLKEKTYFTT 128
            R P AS+TKMMT Y++ E +   K+  +        V + +   + S + L++   +T 
Sbjct: 61  KRLPIASMTKMMTEYLLLEAIDQGKVKWDQTYTPDDYVYEISQDNSLSNVPLRKDGKYTV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-- 186
           ++   A    SAN  + A  E ++GSE KF   M+ KAK++G+ +  + NA+GL +K+  
Sbjct: 121 KELYQATAIYSANAAAIAIAEIVAGSETKFVEKMNAKAKELGLTDYKFVNATGLENKDLH 180

Query: 187 ------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNK 229
                          +A+D AIL   L  ++P+  +  SI K ++R        + N N 
Sbjct: 181 GHQPEGTSVNEESEVSAKDMAILADHLITDYPEILETSSIAKTKFREGTDDEMDMPNWNF 240

Query: 230 LLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS--QERDQKAL 281
           +L  +        +DG+KTG T ++G     +       ++ VV+    +    R  +  
Sbjct: 241 MLKGLVSEYKKATVDGLKTGSTDSAGSCFTGTAERNGMRVITVVLYAKGNLHTGRFDETK 300

Query: 282 ELITSFLEKKTLKH 295
           ++     +  ++K 
Sbjct: 301 KMFDYAFDNFSMKE 314


>gi|153953884|ref|YP_001394649.1| D-alanyl-D-alanine carboxypeptidase-related protein [Clostridium
           kluyveri DSM 555]
 gi|219854499|ref|YP_002471621.1| hypothetical protein CKR_1156 [Clostridium kluyveri NBRC 12016]
 gi|146346765|gb|EDK33301.1| D-alanyl-D-alanine carboxypeptidase-related protein [Clostridium
           kluyveri DSM 555]
 gi|219568223|dbj|BAH06207.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 398

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 118/246 (47%), Gaps = 11/246 (4%)

Query: 56  SIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++ +D N   +   K   E    AS TK+MT  +  +Y       LN +I +S  AA+  
Sbjct: 45  AVALDSNSKVVVYEKNAYELVPMASTTKIMTALVAMKYGD-----LNKKIDISPKAASVR 99

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S +  K+      ++ +  L+ RS ND + A  E ISGS ++FA LM+  A ++G+ NT
Sbjct: 100 GSTVGYKKGESILLKELLFGLMLRSGNDAAIAIAEGISGSVEEFAKLMNEYAGELGVINT 159

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN----RIITNHNKL 230
            ++   GL  +   +TA D A++    +K  P + +  S +          R   N NK+
Sbjct: 160 QFQTPHGLDSEGHYSTAYDLALVTSAAKKE-PLFNEIVSSKDVDGEKNKFSRSYHNINKI 218

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L ++   +G+KTGYT  +G  +VTS+  + + I+ VV+  P   E   K  E +    + 
Sbjct: 219 LWQIPEANGVKTGYTGKAGKCLVTSVAIEKNDIIIVVLNSPGRWEETDKIYEYVNKNYKF 278

Query: 291 KTLKHQ 296
             L  +
Sbjct: 279 VKLFSK 284


>gi|298251261|ref|ZP_06975064.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
           racemifer DSM 44963]
 gi|297545853|gb|EFH79721.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
           racemifer DSM 44963]
          Length = 338

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 107/271 (39%), Gaps = 30/271 (11%)

Query: 39  IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKK 97
           + ++  A  + AK   ++ ++D +   +   +  E P   AS TK+MT  ++ E      
Sbjct: 69  LTVVGGAPPIDAK---AAYLLDTDTGNVLDDQNAEQPLPMASTTKIMTALVVIEAA---- 121

Query: 98  LHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            +L  ++ VS    +     N S   L      T    + AL+  S +D +      ++G
Sbjct: 122 -NLKQEVTVSPDIPQYVFQHNGSNAKLVPGDTLTINDLLYALMLPSGDDAAIVLARAVAG 180

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGL--------HDKNQITTARDQAILGILLRKNF 205
           S   F  +M+  A +  +  T + N  GL              ++ARD A L      N 
Sbjct: 181 SSDAFVGMMNCFALRHHLFQTHFINPDGLTYYDANGKPLPGHYSSARDLARLTAYALSN- 239

Query: 206 PQYYKYFSIRKF------RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           P + K    R++      ++     TN N L N      G+KTG+T  +G+ +V S    
Sbjct: 240 PLFAKIVGTRQYDLAWSPKHGAYHWTNTNDLFNLYPATTGVKTGFTNEAGYCLVFSATRD 299

Query: 260 DDPIVAVVMGMP--TSQERDQKALELITSFL 288
              +V  V+      + +R + A  L+    
Sbjct: 300 HHHLVGTVLFSSDTDTNQRFRDAKTLLEWGF 330


>gi|296186607|ref|ZP_06855009.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           carboxidivorans P7]
 gi|296048644|gb|EFG88076.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           carboxidivorans P7]
          Length = 379

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 125/263 (47%), Gaps = 13/263 (4%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +I +D     +   K+     P AS TK+MT  +  +Y       L  +I VS  AA   
Sbjct: 51  AIALDSKSKVVLYEKKAYTLVPMASTTKIMTTLVAIKYGD-----LERKIEVSGKAAGIR 105

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S +  K+    + ++ +  L+ RS ND + A  E +SGS ++F  LM+  A +IG+ NT
Sbjct: 106 GSTVGFKKGEKISLKELLYGLMLRSGNDAAIAIAEGVSGSVEEFVQLMNEYASEIGVLNT 165

Query: 175 IYKNASGLHDKNQITTARDQAILGILL--RKNFPQYYKYFSIRKFRYR-NRIITNHNKLL 231
            + +  GL  ++  TTA D A++       K F        +    Y   R   N NK+L
Sbjct: 166 HFHSPHGLDYEDHYTTAYDLALITAKAKEIKLFNDIVSSKDVDGKTYNFTRSYHNINKIL 225

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
            ++   +G+KTGYT  +G  +VTS + + + ++ VV+     +ER ++  ++     +  
Sbjct: 226 WQLPEANGVKTGYTGKAGKCLVTSSKVQGNDVIVVVLNC---RERWKETKKIYDYVNKNY 282

Query: 292 TLKHQQTHRKDNLSSTSLKKSLM 314
             K +   + +N  S +L K ++
Sbjct: 283 QFK-RIFSKGENAGSINLHKDVL 304


>gi|229014554|ref|ZP_04171670.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
 gi|228746706|gb|EEL96593.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
          Length = 425

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 64/301 (21%), Positives = 136/301 (45%), Gaps = 37/301 (12%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 45  TGKILHEQNPDELLAIASMSKLIVIYAVLEAIKEGKITWDTKVTISDYAYEVSRNNEFSN 104

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 105 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 164

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  IL  ++   +P+  +    R   + +  
Sbjct: 165 NATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKIIITKYPEMLEDTKQRFRNFPDNH 224

Query: 222 ---RIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 225 PKPIRMENWNWMLPGAAFSYEGADGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 284

Query: 275 ERDQKALELITSF---LEKKTLKHQQTHR------KDNLSSTSLKKSLMIKKLKRTYSQF 325
           ER  ++  LI       EK+ LK  + ++      K++  + + +K + +   K + S +
Sbjct: 285 ERFTESRALIEYGFNNFEKQKLKIDKNNKISVVKGKEDYVTVAPEKEVTVVTAKGSKSPY 344

Query: 326 K 326
           K
Sbjct: 345 K 345


>gi|297584338|ref|YP_003700118.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           selenitireducens MLS10]
 gi|297142795|gb|ADH99552.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           selenitireducens MLS10]
          Length = 363

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 74/277 (26%), Positives = 128/277 (46%), Gaps = 17/277 (6%)

Query: 24  IQRNIQL--MGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQD-EPRYP 77
           I R++ +   G ILF  I+++ M  ++ A+ +    +  VID     +   K   E  YP
Sbjct: 2   ISRHVSIYAAGVILFTGIMVMLMPIQISAEDEVVSEAYAVIDAKTGTLLDGKNHREEMYP 61

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+ T  I  E+L      L+ ++ +S  A   + +++YL+E    T EQ +  ++ 
Sbjct: 62  ASLTKIATAVIAIEHLD-----LDEEVTISNKAIHADGTRVYLEEGESLTVEQLLYGIMI 116

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAK-KIGMQNTIYKNASGLHDKNQITTARDQAI 196
            SAND S A  E I+GS + F+ LM+   + +IG++NT + N  GL D+  +TTA D A 
Sbjct: 117 SSANDASIALAEHIAGSVEAFSRLMNTYIQNEIGLENTYFTNPHGLFDEEHVTTAEDMAR 176

Query: 197 LGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           +     +N   Y +      + +     +  I +H+ +      +   K G+   SG  +
Sbjct: 177 IMKYALEN-DTYRELAEKTDYHWQSEGWDTRIFHHHAMRRHYDFVTAGKNGFVSQSGLTL 235

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
            TS       ++ V +  P+        L L     +
Sbjct: 236 ATSGIQDQTELIVVNLNAPSRSRIVSDTLTLFERNFD 272


>gi|325679044|ref|ZP_08158638.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus
           albus 8]
 gi|324109168|gb|EGC03390.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus
           albus 8]
          Length = 359

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 73/269 (27%), Positives = 120/269 (44%), Gaps = 16/269 (5%)

Query: 22  IYIQRNIQLMGKILFLSIIMISM-ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           I +     ++  +L  SI  I++ A EL      ++IV +   +++   K  DE    AS
Sbjct: 6   IKLCAGAAVLALMLIFSISRINVSAEELPDVSAKAAIVYNGATDEVLFEKNADEQLPMAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
            TK+M+  I+ E        L+ +  V   A     S + L++    +       ++  S
Sbjct: 66  TTKIMSALIVLEQND-----LDERFIVDSQAIMTEGSSMGLQKGDEVSLRDLACGMLLPS 120

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD--KNQITTARDQAIL 197
            ND + A    ++GS   F  LM+ +A ++G+ +T +   SGL D   +  +TARD A L
Sbjct: 121 GNDAANAAAVRVAGSVDAFVELMNRRAAEMGLFDTHFVTPSGLDDYTDDHYSTARDMAKL 180

Query: 198 GILLRK--NFPQYYKYFSIRKF---RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
                K  NF         + F      +R + N NKLL K+  I GIKTG+T  +   +
Sbjct: 181 AAEAMKDQNFRDICSLQKAKVFFGDPPYDRWLINSNKLL-KISGITGIKTGFTDKARRCL 239

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           V+S   +   ++ V +  P    RD  AL
Sbjct: 240 VSSCMREGCELICVTLNDPDDW-RDHMAL 267


>gi|296332949|ref|ZP_06875407.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305672708|ref|YP_003864379.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296149913|gb|EFG90804.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305410951|gb|ADM36069.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 443

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 71/314 (22%), Positives = 140/314 (44%), Gaps = 40/314 (12%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKY--------SSIVIDVNKNQMTGFKQDE 73
           +  ++  QL+  ++ L++ +  +A    AK           ++I+I+ +  ++   K  +
Sbjct: 1   MNTKKCKQLLMSLVVLTLAVTCLAPMSKAKAASDPIDINASAAIMIEASSGKILYSKNAD 60

Query: 74  PRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKTAATQNPSKLYLKEKTYFTT 128
            R P AS+TKMMT Y++ E +   K+  +        V + +   + S + L++   +T 
Sbjct: 61  KRLPIASMTKMMTEYLLLEAIDQGKVKWDQTYTPDDYVYEISQDNSLSNVPLRKDGKYTV 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----- 183
           ++   A    SAN  + A  E ++GSE KF   M+ KAK++G+ +  + NA+GL      
Sbjct: 121 KELYQATAIYSANAAAIAIAEVVAGSETKFVEKMNAKAKELGLTDYKFVNATGLENKDLH 180

Query: 184 ---------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNK 229
                    D+    +A+D AIL   L  ++P+  +  SI K ++R        + N N 
Sbjct: 181 GHQPEGTSVDEESEVSAKDMAILADHLITDYPEILETSSIAKTKFREGTDDEMDMPNWNF 240

Query: 230 LLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS--QERDQKAL 281
           +L  +        +DG+KTG T ++G     +       ++ VV+    +    R  +  
Sbjct: 241 MLKGLVSEYKKATVDGLKTGSTDSAGSCFTGTAELNGMRVITVVLNAKGNLHTGRFDETK 300

Query: 282 ELITSFLEKKTLKH 295
           ++        ++K 
Sbjct: 301 KMFDYAFNNFSMKE 314


>gi|291543602|emb|CBL16711.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. 18P13]
          Length = 376

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 61/250 (24%), Positives = 116/250 (46%), Gaps = 4/250 (1%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +        KP  +  +++    Q+   +   E     ++ K+MT+ +  E L+S  L  
Sbjct: 20  LPEPGAAAGKPCRAYALLEARTGQLLLEENSSESLPMGTMAKLMTMLLTAEALESGALSE 79

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
           NT +  S  A  Q  + ++L      T    +  +I  +AND + A  E +SG+E++F +
Sbjct: 80  NTAVTASPAANAQKGASIWLMPGEKMTVGDLLRGMIIGNANDAAVALAEAVSGTEEQFVM 139

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FR 218
            M+ +  ++G+++T++  ASGL ++ Q+TTA D   L   L   +P    Y +  +   R
Sbjct: 140 DMNARGFELGLRSTVFTCASGLSEEGQVTTAADLGRLCCKL-TEYPVLTPYMTTWRTFLR 198

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                + N N L+     + G+K G+   +G+ +  + +  D   VAVV+G     +R  
Sbjct: 199 GEQTELVNENTLVRSYDGLLGMKAGHGERTGYTLAAAAQRGDGIYVAVVLGCQEDADRFS 258

Query: 279 KALELITSFL 288
            A  L++   
Sbjct: 259 IAKTLLSKGF 268


>gi|229829484|ref|ZP_04455553.1| hypothetical protein GCWU000342_01574 [Shuttleworthia satelles DSM
           14600]
 gi|229791915|gb|EEP28029.1| hypothetical protein GCWU000342_01574 [Shuttleworthia satelles DSM
           14600]
          Length = 508

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 68/322 (21%), Positives = 134/322 (41%), Gaps = 35/322 (10%)

Query: 43  SMASELHAKPKY---SSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKL 98
           + ++    +P+    S++++D++  ++   K+D+  RYPAS TK+MT  +  E+ +    
Sbjct: 41  AASAAWPQEPEVQSASAVLMDLDSGEILYGKEDQTARYPASTTKLMTALLALEHSK---- 96

Query: 99  HLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS--- 152
            L+  +  S  A      N S +        + EQ +  ++  SAN+ + A  E +    
Sbjct: 97  -LDETVTFSSDAVFKNETNSSHIARDVGEQMSMEQTLYGVLLASANECAYAIAEHVGADM 155

Query: 153 -GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            G    F   M+++AK++G  NT + N+SGLHD    T A D A++     +N     K 
Sbjct: 156 GGDYNTFIQAMNDRAKELGCVNTHFVNSSGLHDDQHYTCAYDLALIAREAYQN-ETLRKM 214

Query: 212 FSIRKFRYR-------NRIITNHNKLLNK-------MHNIDGIKTGYTRNSGFNIVTSLR 257
              R++             + N + +L+             G KTGYT  +  ++VT + 
Sbjct: 215 VGTRRYEIPPTNKHAEPTPLNNTHAMLSANKTSKFLYDGCQGGKTGYTDEARHSLVTYVE 274

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSF---LEKKTLKHQQTHRKDNLSSTSLKKSLM 314
                +V V M      +  +  + L+        K +L+ +    K + +  +  +  +
Sbjct: 275 RDGRKLVCVSM-CAEGNDSYKDTIALMDWGLANFHKVSLEDETLQSKVDEAIKASGRQGL 333

Query: 315 IKKLKRTYSQFKKIDAKAHSTQ 336
             + K T    K    +  + +
Sbjct: 334 SWQAKGTLLLPKDAAVRDLAVK 355


>gi|221632531|ref|YP_002521752.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermomicrobium roseum
           DSM 5159]
 gi|221157198|gb|ACM06325.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermomicrobium roseum
           DSM 5159]
          Length = 549

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 61/270 (22%), Positives = 106/270 (39%), Gaps = 17/270 (6%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYI 88
           L   I+ L+I +   A  L        I++D    Q+   +   +P   ASLTK+MT  +
Sbjct: 10  LGLLIVALAIPIPVRADSLPEVVAQHWIIMDAETGQIVAERAARQPVAIASLTKVMTAVV 69

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
             E     +  L+  + +         S   L+     T    +  L+ RS ND + A  
Sbjct: 70  ALE-----RGALDQPVTIVPEDL-IGESSAGLRAGQVVTLRTLLYGLLLRSGNDAAMAIA 123

Query: 149 EFISGSEKK--------FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
             + GS           F   M+ KA ++G+Q T ++N  GL +   +++A D A L  +
Sbjct: 124 RAVGGSPDAEDPAARQRFVTWMNAKAVELGLQATSFRNPHGLDEPGHVSSAYDLARLTRV 183

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
              + P + + F    +        + N+L  +   I G KTG+T  +G  ++       
Sbjct: 184 ALAD-PVFVEIFGAASYHGEGFSWRHTNRLPERYPGIIGGKTGWTDEAGLCLIEVAERAG 242

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + VV+   T       A +L+     K
Sbjct: 243 KTAI-VVLTGSTLAAWYDDAAKLLDYGWTK 271


>gi|38142281|dbj|BAD00943.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142299|dbj|BAD00952.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142351|dbj|BAD00978.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
          Length = 413

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 143/343 (41%), Gaps = 33/343 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTK 82
           +++    +  +  L     ++A +     K+ +I ++ N  ++   K   +P   AS+TK
Sbjct: 1   MKKIFLTLLTVSLLGCASTAVAQDFTIAAKH-AIAVEANTGKILYEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S            S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKT 292
           KTG T  +G + V +   K   ++ VV+           R      L+      F  +K 
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKI 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           ++    ++         K+  +           ++I  ++  +
Sbjct: 299 VQQGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIEQIGNQSSQS 341


>gi|258645732|ref|ZP_05733201.1| methylenetetrahydrofolate reductase [Dialister invisus DSM 15470]
 gi|260403101|gb|EEW96648.1| methylenetetrahydrofolate reductase [Dialister invisus DSM 15470]
          Length = 330

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 107/243 (44%), Gaps = 14/243 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++++D N   +   K+ E   YPAS TK++T  I  E     +  L     ++  A 
Sbjct: 54  AVSAVLMDGNTGDIIAQKEGELKIYPASTTKILTCIIALEE---GREKLEADAVITPLAI 110

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            Q+ + + L+     +  + +  ++  S ND + +  E + GS   F  +M+ KA  IG 
Sbjct: 111 GQDGTNIGLRSDMPISLHELLYGMMLVSGNDAAVSVAETVGGSYGGFIQMMNEKAVSIGA 170

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF--RYRN---RIITN 226
             + + N +GL DKN  TTA D A +      N P++ K    + +  RYR+   R + N
Sbjct: 171 TRSHFANPNGLTDKNHYTTAIDMAKISRYAMGN-PEFRKIVREKVYPMRYRSGVYRNVEN 229

Query: 227 HNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N+ L N     +GIKTG T  +G  +V S       ++A V      + R +       
Sbjct: 230 RNEFLSNGYRGANGIKTGMTMAAGECLVASAERDGQLLIAAVY---DDENRWKDVEAWFD 286

Query: 286 SFL 288
              
Sbjct: 287 YGF 289


>gi|291524141|emb|CBK89728.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale DSM 17629]
          Length = 465

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 122/293 (41%), Gaps = 32/293 (10%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ- 113
           ++V++VN   +   K   E  YPAS+TK++T Y+           ++ ++  SK A  + 
Sbjct: 37  AVVMEVNTGTVLYEKNSHEKHYPASITKILTTYLTI-----LNCKMDEKVTFSKEAVKES 91

Query: 114 --NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF----ISGSEKKFAILMSNKAK 167
               S +        T EQ +  ++  SAN+ + A  E     + G    F  +M+ +AK
Sbjct: 92  SDGSSSIKRDVGEEMTMEQTLYGVMLESANECAYAAAEHTGKKLGGDYSTFIDMMNKEAK 151

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-------RYR 220
           ++G  +T + NA+GL D+N  T+A D  ++     +N  ++ K    + +          
Sbjct: 152 ELGCTDTHFNNANGLPDENHWTSAYDMGLISCAAYRN-DEFRKITGTKTYIIPPTNKHTE 210

Query: 221 NRIITNHNKLLNK--------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           +  + NH+ +L+          H+  G KTGYT  +   +VT        + AV+M   +
Sbjct: 211 DTPLYNHHAMLHPFKSYSQFVNHDCTGGKTGYTSVANSTLVTYAEKDGLTLCAVIMNAQS 270

Query: 273 SQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQF 325
             +       L+  +      K       +N ++T     L +      Y++ 
Sbjct: 271 PDQ-YADTNTLLNYYFSN--FKALSIAENENSAATDNTPDLGVMNEHGMYAKV 320


>gi|149002408|ref|ZP_01827342.1| penicillin-binding protein 3/D-alanyl-D-alanine carboxypeptidase
           [Streptococcus pneumoniae SP14-BS69]
 gi|237650527|ref|ZP_04524779.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae CCRI
           1974]
 gi|237822666|ref|ZP_04598511.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae CCRI
           1974M2]
 gi|147759345|gb|EDK66337.1| penicillin-binding protein 3/D-alanyl-D-alanine carboxypeptidase
           [Streptococcus pneumoniae SP14-BS69]
          Length = 413

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 144/343 (41%), Gaps = 33/343 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTK 82
           +++    +  +  L     ++A +     K+ +I ++ N  ++   K   +P   AS+TK
Sbjct: 1   MKKIFLTLLTVSLLGGASTAVAQDFTIAAKH-AIAVEANTGKILYEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S            S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKT 292
           KTG T  +G + V +   K   ++ VV+           R      L+      F  +K 
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKI 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           ++    ++         K+  +I          +++  ++  +
Sbjct: 299 VQQGDAYQDSKAPVQDGKEDTVIAVAPEDIYLIERVGNQSSQS 341


>gi|255994530|ref|ZP_05427665.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saphenum ATCC
           49989]
 gi|255993243|gb|EEU03332.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saphenum ATCC
           49989]
          Length = 447

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 75/322 (23%), Positives = 133/322 (41%), Gaps = 40/322 (12%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQ 94
           F +       +   A    + +V D +  ++   +  +    PAS TK+MT  +  E   
Sbjct: 23  FFTFTQKGYTAMTPAADANAVLVADCDTGEVIYQRNADKSVAPASTTKIMTALLTIE--- 79

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
              ++L   + V + AA      + L+          +  L+  SA+D +      +SGS
Sbjct: 80  --NVNLQKVVEVPQ-AAEGLKDGINLRTGEKMRIIDLLHGLLIASADDTAIVLAYAVSGS 136

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN-----FPQYY 209
            +KFA  M+ KAK++G +NT +KN +G+ +    +TA D  I+     KN          
Sbjct: 137 VEKFAEKMNQKAKELGCKNTTFKNPNGIDEAGHQSTAYDLFIMSNEFMKNKLMRKIVTKL 196

Query: 210 KYFSIRKFRYRNRIITNHNKLLN---------------KMHNIDGIKTGYTRNSGFNIVT 254
           +Y      +   R++ NHN+LL                      G+KTG T N+G  +++
Sbjct: 197 QYTIPATNKSGVRVLQNHNRLLFDTNHNVEVFGQLRPAYYEGALGLKTGDTVNAGACLIS 256

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLM 314
             +     + +VVMG  + ++R   ++E +    EK  LK              +KK   
Sbjct: 257 MAKRHGVEVCSVVMGT-SKKQRFAASIETLDHAFEKYALKK------------IVKKGEK 303

Query: 315 IKKLKRTYSQFKKIDAKAHSTQ 336
           + KLK    +  K+D K   ++
Sbjct: 304 VAKLKVLQGESDKVDIKVKGSK 325


>gi|326791206|ref|YP_004309027.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
           DSM 5427]
 gi|326541970|gb|ADZ83829.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
           DSM 5427]
          Length = 436

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 79/289 (27%), Positives = 124/289 (42%), Gaps = 32/289 (11%)

Query: 24  IQRNIQLMGKI---LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPAS 79
           ++R + L   +   LF S  +I            S+I+ID     +   K     +YPAS
Sbjct: 1   MKRKVYLCLSLILTLFFSCPIIQAEETAPQIEAESAILIDATTKTVLYEKNAYSKQYPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGILALI 136
           +TK+MT  +  E LQ         I  SK A     +  S + +      T +Q +  L+
Sbjct: 61  ITKLMTALLAIENLQP-----TDTITFSKEAIFGIERGSSHIGMDVGEQITVDQALHGLL 115

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             SAN+V+    E +SGS   FAI MS++AK++G  NT + N  GLHD+N  TTA D ++
Sbjct: 116 LMSANEVANGLAEAVSGSIDAFAIRMSDRAKELGALNTHFVNPHGLHDENHYTTAYDMSL 175

Query: 197 LGILL---------RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM-------HNIDGI 240
           +   L          K++   Y+     K     R ++  +K+ N +        ++ G 
Sbjct: 176 IASYLADNEYFLNIMKDY--IYQINGTNK-TDEIRYLSQDHKMFNPLKDASIFREDVIGG 232

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           KTGYT  +   +VT  +     +VAVVM              L+     
Sbjct: 233 KTGYTDQARHTLVTIAKEGKTTLVAVVMKSEKGTL-YSDTNTLLDYGFN 280


>gi|225856538|ref|YP_002738049.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           P1031]
 gi|38142339|dbj|BAD00972.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|225726015|gb|ACO21867.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           P1031]
          Length = 413

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 144/343 (41%), Gaps = 33/343 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTK 82
           +++    +  +  L  +  ++A +     K+ +I ++ N  ++   K   +P   AS+TK
Sbjct: 1   MKKIFLTLLTVSLLGGVSTAVAQDFTIAAKH-AIAVEANTGKILYEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S            S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKT 292
           KTG T  +G + V +   K   ++ VV+           R      L+      F  +K 
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKI 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           ++    ++         K+  +           +++  ++  +
Sbjct: 299 VQQGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQS 341


>gi|219667694|ref|YP_002458129.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
           hafniense DCB-2]
 gi|219537954|gb|ACL19693.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
           hafniense DCB-2]
          Length = 423

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 78/282 (27%), Positives = 124/282 (43%), Gaps = 25/282 (8%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKY---------SSIVIDVNKNQMTGFKQ-DEPRYP 77
           ++L+  +     ++++ A  +   P            +I+ID+   Q    K  D P  P
Sbjct: 1   MRLIAVLFTALAMLLNFAVPVFGSPDKVPVPELSSEGAILIDITTGQTLFAKNPDHPFEP 60

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
           AS TK+M+  I  E     K +LN  +    +   Q     +++YL+     T E  + A
Sbjct: 61  ASTTKIMSALIALE-----KGNLNDLVTAGPSVLDQELTQGTRIYLEPGEQVTLENLLYA 115

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           L+  SAND + A  E I G  + F  LM+ KAK+IG  NT +KN SGL +   +TTARD 
Sbjct: 116 LLLNSANDAAVAIAEHIGGDVQGFTDLMNAKAKEIGALNTSFKNPSGLSEDGHLTTARDL 175

Query: 195 AILGILLRKNFPQYYKYFSIR-KFRYRNR-----IITNHNKLLNKMHNIDGIKTGYTRNS 248
           A++     +N P    Y   + K   RNR      + N N+ +     + G+KTGYT ++
Sbjct: 176 AMIARFAYQN-PVLRDYVKTKTKIIPRNRENIPTEMYNINEFIWTEPTVTGMKTGYTTSA 234

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           G   V +       ++ VV+  P+          L       
Sbjct: 235 GNTYVATAERDGRALLGVVLKSPSKTSIYTDMRNLFEYGFTN 276


>gi|195978797|ref|YP_002124041.1| D-alanyl-D-alanine carboxypeptidase precursor DacA.2 [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|195975502|gb|ACG63028.1| D-alanyl-D-alanine carboxypeptidase precursor DacA.2 [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
          Length = 411

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 140/298 (46%), Gaps = 28/298 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           +++ I  +  ++ L I   S+A +     +  +I +++   ++   K+ + + P ASLTK
Sbjct: 1   MKKLIVTLAALMCL-ITNTSLAEDFSVNSRQ-AIAVEMTTGKILYAKEAQQKAPIASLTK 58

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRS 139
           ++T+Y++ + +++ +L  ++Q+ +S+ A   AT         E+  +T ++ + + +  S
Sbjct: 59  LLTVYLVLKEIKAGRLQWDSQVILSEYALQLATDPDISNPAFEQRPYTIKELVESSLIIS 118

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HDK 185
           AN  + A  E I+GSE  F  +M  + +  G+++    NASGL               D 
Sbjct: 119 ANSSAVALAEHIAGSEPTFVDMMKKQLEAWGIRDYRLVNASGLNNSMLKGHLYPGSQPDD 178

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIK 241
               TARD A++   L ++FP+     S  + ++  + + N N LL         +DG+K
Sbjct: 179 ENQMTARDLALIAQQLLQDFPEVLTISSQAQLKWGEKDLPNSNLLLAGREMARTGVDGLK 238

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTLKH 295
           TG T  +G  ++ +    +  +++V++         + R  +   L+       TL+ 
Sbjct: 239 TGTTSQAGQTMIATAVQDNMRVISVILHADQSDTDERARFVETNRLLDYCFNSYTLEK 296


>gi|291527816|emb|CBK93402.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale M104/1]
          Length = 465

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 122/292 (41%), Gaps = 32/292 (10%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ- 113
           ++V++VN   +   K   E  YPAS+TK++T Y+           ++ ++  SK A  + 
Sbjct: 37  AVVMEVNTGTVLYEKNSHEKHYPASITKILTTYLTI-----LNCKMDEKVTFSKEAVKES 91

Query: 114 --NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF----ISGSEKKFAILMSNKAK 167
               S +        T EQ +  ++  SAN+ + A  E     + G    F  +M+ +AK
Sbjct: 92  SDGSSSIKRDVGEEMTMEQTLYGVMLESANECAYAAAEHTGKKLGGDYSTFIDMMNKEAK 151

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-------RYR 220
           ++G  +T + NA+GL D+N  T+A D  ++     +N  ++ K    + +          
Sbjct: 152 ELGCTDTHFNNANGLPDENHWTSAYDMGLISCAAYRN-DEFRKITGTKTYIIPPTNKHTE 210

Query: 221 NRIITNHNKLLNK--------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           +  + NH+ +L+          H+  G KTGYT  +   +VT        + AV+M   +
Sbjct: 211 DTPLYNHHAMLHPFKSYSQFVNHDCTGGKTGYTSVANSTLVTYAEKDGLTLCAVIMNAQS 270

Query: 273 SQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
             +       L+  +      K       +N ++T     L +      Y++
Sbjct: 271 PDQ-YADTNTLLNYYFSN--FKALSIAENENSAATDNTPDLGVMNEHGMYAK 319


>gi|90961063|ref|YP_534979.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           salivarius UCC118]
 gi|90820257|gb|ABD98896.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           salivarius UCC118]
          Length = 418

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 125/296 (42%), Gaps = 25/296 (8%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-AS 79
            I I  ++ ++  +  LS+I              S+I ID    Q+   K D+  YP AS
Sbjct: 9   GISILTSLIIVTGVGQLSLIKADQTLPQLDLEAKSAIAIDAKTGQIIYAKDDKQTYPVAS 68

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILAL 135
           ++K++T YI+ + +   ++   T++  + T          + + L+E   +T  Q   A+
Sbjct: 69  MSKLLTAYILLQAIHKGEVTWETKVTPTATEVDISNNTELTNVPLQEGHSYTIRQLYQAM 128

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK---------- 185
           +  SAN  +   G  ISG++ KF   M   AK +G+ +    +A+GL  K          
Sbjct: 129 LVGSANAATMLIGNAISGTQTKFIDKMRETAKSLGITDAKIYSANGLTAKYLGDEIYPNT 188

Query: 186 ----NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN----RIITNHNKLLNKMHN- 236
                   + RD AI+   L K +P+  +   + K  + +      + N N+LL    N 
Sbjct: 189 DENAENEFSVRDMAIISQKLIKEYPEILETTKLTKIDFNDNGEITTVNNTNELLQDDSNL 248

Query: 237 -IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
            IDG+KTG +  +G+   ++       I+ V+ G   +  R  +   L+       
Sbjct: 249 EIDGLKTGTSDAAGYCFASTTNKDGHRIITVIAGAKDNDARFDQTKNLLNYIYNNY 304


>gi|307703815|ref|ZP_07640756.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
           oralis ATCC 35037]
 gi|307622650|gb|EFO01646.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
           oralis ATCC 35037]
          Length = 405

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 74/327 (22%), Positives = 140/327 (42%), Gaps = 36/327 (11%)

Query: 37  LSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFE 91
           +++++   AS + A+        +I ++    ++   K  ++P   AS+TK++T+Y+++E
Sbjct: 1   MTLLVFGTASTVSAQEFDVAAKHAIAVEATTGKILYEKDANQPVEIASITKLVTVYLVYE 60

Query: 92  YLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
            L+   + L+T + +S            S + ++ + Y T EQ + A +  SAN  + A 
Sbjct: 61  ALEQGTISLSTPVDISDYPYKLTTNSEASNVPMEARNY-TVEQLLEATMVSSANSAAIAL 119

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARD 193
            E I+GSEK F   M  K  + G+Q+    N +GL+              D     +A D
Sbjct: 120 AEKIAGSEKDFVDKMRAKLLEWGIQDATIVNTTGLNNETLGDNIYPGSKKDDENKLSAYD 179

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIKTGYTRNSG 249
            AI+   L +++PQ  +        +    I + N +L  M      IDG+KTG T  +G
Sbjct: 180 VAIVARNLIRDYPQVLEITKKPTSTFAGLEIHSTNYMLEGMPAYRGGIDGLKTGTTDKAG 239

Query: 250 FNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELIT----SFLEKKTLKHQQTHRK 301
            + V +   K   I+ VV+           R      L+     +F  K  ++  + +  
Sbjct: 240 ASFVGTTVEKGMRIITVVLNADQQDTNPYARFTATSALLDYISANFALKTVVQKGEAYND 299

Query: 302 DNLSSTSLKKSLMIKKLKRTYSQFKKI 328
             ++    K+  +    K   S  ++I
Sbjct: 300 SKVTVLDGKEDNVTAVAKSDISIVQRI 326


>gi|294673565|ref|YP_003574181.1| serine-type D-Ala-D-Ala carboxypeptidase [Prevotella ruminicola 23]
 gi|294471981|gb|ADE81370.1| serine-type D-Ala-D-Ala carboxypeptidase [Prevotella ruminicola 23]
          Length = 280

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 105/240 (43%), Gaps = 14/240 (5%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           + +++D +   +   K   E RY AS+TKMMT  I  E     K +L+  I +++     
Sbjct: 36  AWMLVDDSTGIVISEKCGFERRYMASITKMMTALIALE-----KGNLSDSIDITEDVFIN 90

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S++ L +   +     I  ++  S ND + A  + + G   +F  LM+ KA+ +GM +
Sbjct: 91  RDSRVRLGQG--YVMLDLIYEMMMISDNDAAYALAKHVGGDTLRFYDLMNQKAQYLGMDS 148

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-----FRYRNRIITNHN 228
           T + N +G+ + N  ++A D   L     ++   +       +        R+    N N
Sbjct: 149 THFANPNGMPNDNNFSSAADLVKLARYAMRD-TMFASIVGTAEKAVPLTDGRHMDCRNSN 207

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            LL+      GIKTGYTR +G+ + +S       +  V++       R  ++  L+    
Sbjct: 208 ALLHTYEGCIGIKTGYTRQAGYCLASSATRNGHTLYLVLLNSRRHATRFTESAALLDYGF 267


>gi|301794006|emb|CBW36404.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
           pneumoniae INV104]
 gi|332204876|gb|EGJ18941.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           GA47901]
          Length = 413

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 142/343 (41%), Gaps = 33/343 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTK 82
           +++    +  +  L     ++A +     K+ +I ++ N  ++   K   +P   AS+TK
Sbjct: 1   MKKIFLTLLTVSLLGGASTAVAQDFTIAAKH-AIAVEANTGKILYEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y+++E L++  + L+T + +S            S + ++ + Y T E+ + A +  
Sbjct: 60  LITAYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFIDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKT 292
           KTG T  +G + V +   K   ++ VV+           R      L+      F  +K 
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKI 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           ++    ++         K+  +           +++  ++  +
Sbjct: 299 VQQGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQS 341


>gi|229187618|ref|ZP_04314756.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
 gi|228595870|gb|EEK53552.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
          Length = 441

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 129/298 (43%), Gaps = 28/298 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 61  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 120

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 121 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 180

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  IL   +   +P+  +    R   + +  
Sbjct: 181 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 240

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 241 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 300

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
           ER  ++ ELI         +  +  + + LS    K+  +    ++  +   K  +K 
Sbjct: 301 ERFTESRELIEYGFNNFKKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSKN 358


>gi|150015409|ref|YP_001307663.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901874|gb|ABR32707.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 411

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 124/301 (41%), Gaps = 25/301 (8%)

Query: 34  ILFLSIIMISMAS--ELHAKPKYSS---IVIDVNKNQMTGFKQDEP-RYPASLTKMMTLY 87
           ILFL +   +  S       P+ ++    +ID +  Q+   K +E    PAS TK+MT  
Sbjct: 10  ILFLFLFCFTYTSVQAETQPPQINAEGCALIDASTGQVLYGKNEEKVLEPASTTKVMTAI 69

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           I  E     K  L+ ++ V +     + + + L +    T    +L L+  S ND + A 
Sbjct: 70  ITLE-----KCKLDDEVTVQEDFTKIDGTAVGLLKGDVVTVRDLLLGLLLESGNDCANAL 124

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            + ISGS + F+ LM+ KAK++G  +T +KN SGL D    TTA D A+       N   
Sbjct: 125 ADHISGSTEAFSKLMNEKAKELGALHTNFKNPSGLPDPEHTTTAHDLALFLREAINN-KD 183

Query: 208 YYKYFSIRKFRY-------RNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTS 255
           Y +  +   +         +  ++ N N ++NK            K GYT  S    V +
Sbjct: 184 YVQLSTTPNYTITLKNNPSKTIVLNNKNYMINKNSRYYYPFALCGKNGYTTKSNHTYVAA 243

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMI 315
                  +VA  +      +       ++    +  +L H    + D +S   +  +L I
Sbjct: 244 AEKNGHVLVASFLNALDKDQNFHDMQAVLNYGFDNYSLVH-LYQKGDEVSQYKITNNLTI 302

Query: 316 K 316
            
Sbjct: 303 P 303


>gi|227499916|ref|ZP_03930009.1| serine family D-Ala-D-Ala carboxypeptidase [Anaerococcus tetradius
           ATCC 35098]
 gi|227218025|gb|EEI83298.1| serine family D-Ala-D-Ala carboxypeptidase [Anaerococcus tetradius
           ATCC 35098]
          Length = 402

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 88/327 (26%), Positives = 151/327 (46%), Gaps = 26/327 (7%)

Query: 34  ILFLSIIMISMASELHAKPK---------YSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           I  L+++ + M  E+ A             S ++ +     +   K  DE R  ASLTK+
Sbjct: 9   ISLLTLVFLLMPGEIFAAQTRVVGLDSNVSSYLIGNEETGDVYYEKNADEARPMASLTKL 68

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           MT  ++ + ++  K++LNT +   K A    +   S L LKEK  ++ E+ +  LI  S 
Sbjct: 69  MTFLLVRDAIEEGKINLNTSVKADKKAEELTSWEYSSLGLKEKESYSVEELLQGLIAVSG 128

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL---HDKNQITTARDQAIL 197
           ND +    + ++GSE+KFA LM+ KAK++G+ +  Y NASG+    +K   ++ARD   L
Sbjct: 129 NDCAYLLAKTVAGSEEKFATLMNEKAKELGLSSQKYYNASGIETKDNKENQSSARDLFKL 188

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRII--TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
              + + +P   +Y ++ +     + I  T+   L   +  +DG+KTG T  +G+ +VT+
Sbjct: 189 SSFIVRKYPDILRYSTMDEVNIPGKGIRKTSTIPLRKDIKGVDGLKTGTTDKAGYCLVTT 248

Query: 256 LRY------KDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRK--DNLSST 307
           +         D   + VVMG      R+    +LI       + K      K  D++   
Sbjct: 249 VDMKELDGSDDFRCIGVVMGADQKDTRESVMSDLIYYISRFYSCKKVLDVNKSLDSIEVG 308

Query: 308 SLKKSLMIKKLKRTYSQFKKIDAKAHS 334
           S K+  +    K   S     D K  +
Sbjct: 309 SAKQGYIELYPKENLSIISNDDKKVAT 335


>gi|148997049|ref|ZP_01824703.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP11-BS70]
 gi|168575530|ref|ZP_02721466.1| penicillin-binding protein 3 [Streptococcus pneumoniae MLV-016]
 gi|169833078|ref|YP_001694325.1| penicillin-binding protein 3 [Streptococcus pneumoniae
           Hungary19A-6]
 gi|307067470|ref|YP_003876436.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           AP200]
 gi|38142285|dbj|BAD00945.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142289|dbj|BAD00947.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142315|dbj|BAD00960.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142317|dbj|BAD00961.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|66817136|gb|AAY56864.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|147756749|gb|EDK63789.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP11-BS70]
 gi|168995580|gb|ACA36192.1| penicillin-binding protein 3 [Streptococcus pneumoniae
           Hungary19A-6]
 gi|183578404|gb|EDT98932.1| penicillin-binding protein 3 [Streptococcus pneumoniae MLV-016]
 gi|221327906|gb|ACM17689.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|221327912|gb|ACM17692.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|221327918|gb|ACM17695.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|221327920|gb|ACM17696.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|306409007|gb|ADM84434.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           AP200]
 gi|327390225|gb|EGE88568.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           GA04375]
          Length = 413

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 143/343 (41%), Gaps = 33/343 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTK 82
           +++    +  +  L     ++A +     K+ +I ++ N  ++   K   +P   AS+TK
Sbjct: 1   MKKIFLTLLTVSLLGGASTAVAQDFTIAAKH-AIAVEANTGKILYEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S            S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKT 292
           KTG T  +G + V +   K   ++ VV+           R      L+      F  +K 
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKI 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           ++    ++         K+  +           ++I  ++  +
Sbjct: 299 VQQGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIEQIGNQSSQS 341


>gi|38142291|dbj|BAD00948.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142297|dbj|BAD00951.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|301799864|emb|CBW32439.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
           pneumoniae OXC141]
          Length = 413

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 143/343 (41%), Gaps = 33/343 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTK 82
           +++    +  +  L     ++A +     K+ +I ++ N  ++   K   +P   AS+TK
Sbjct: 1   MKKIFLTLLTVSLLGGASTAVAQDFTIAAKH-AIAVEANTGKILYEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S            S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKT 292
           KTG T  +G + V +   K   ++ VV+           R      L+      F  +K 
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKI 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           ++    ++         K+  +           ++I  ++  +
Sbjct: 299 VQQGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIEQIGNQSSQS 341


>gi|149184554|ref|ZP_01862872.1| Serine-type D-Ala-D-Ala carboxypeptidase [Erythrobacter sp. SD-21]
 gi|148831874|gb|EDL50307.1| Serine-type D-Ala-D-Ala carboxypeptidase [Erythrobacter sp. SD-21]
          Length = 388

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 64/272 (23%), Positives = 125/272 (45%), Gaps = 13/272 (4%)

Query: 30  LMGKILFLSIIMISMASE-----LHAKPKYS--SIVIDVNKNQMTGFKQDEPRY-PASLT 81
           L+   +  + + +   ++     +  +   +  + + D+   Q+   ++ + R+ PAS+T
Sbjct: 8   LVAFCVAATAVCVPAVAQKAERSVPPEADVAPIAFLFDLTSGQVLFEREADRRFMPASIT 67

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKT---AATQNPSKLYLKEKTYFTTEQGILALITR 138
           K+MT ++ FE+++  K+       +      A     S ++L      T +  +  + T 
Sbjct: 68  KVMTTFLAFEWMEEGKIVPAQSFTIKPEVWRAWNNVGSTMFLPHDARVTVDDLVHGVTTV 127

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-QITTARDQAIL 197
           SAND + A  +  +GS +++   M++KA +IGM ++ +   +G  D      TARD   L
Sbjct: 128 SANDGAAALADGAAGSIEEWVAAMNSKASEIGMADSHFGTPNGWMDDGRTFVTARDLTTL 187

Query: 198 GILLRKNFP-QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
              + +  P +Y  +     F Y N    NH+ +   +   DGIKTG+T  +G+  + S 
Sbjct: 188 ATAMIRRHPTKYRHFIGQPAFTYNNITQPNHDPISGVVPGADGIKTGFTNQAGYGFLGSA 247

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
                 +V VV   P +++RD+ A  LI    
Sbjct: 248 ERNGRRLVMVVAASPRARDRDRAARNLIEWGF 279


>gi|15894549|ref|NP_347898.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum
           ATCC 824]
 gi|15024194|gb|AAK79238.1|AE007639_11 D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum
           ATCC 824]
 gi|325508682|gb|ADZ20318.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum EA
           2018]
          Length = 425

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 80/325 (24%), Positives = 141/325 (43%), Gaps = 36/325 (11%)

Query: 24  IQRNIQLMGKILFL-SIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPA 78
           +++ I     ++FL S I I++ +++   P  S+   +++D N  Q+   K  +    PA
Sbjct: 1   MRKLIIFTLTVMFLFSTININIYAKVPDPPNVSADGAVLMDGNSGQILYEKNMNASYPPA 60

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVS-----KTAATQNPSKLYLKEKTYFTTEQGIL 133
           S TK+MT  +  E     K  L+ ++ VS     K  A ++ + + +      T    + 
Sbjct: 61  STTKIMTALLTLE-----KCKLDDKVKVSNDFTTKYLALRDGNSIGITNGEELTVRDLLH 115

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           AL+  SAND + A  E ISGS + FA LM+ KA ++G  NT +KN +GL+DK+  T+A+D
Sbjct: 116 ALLLISANDAAVALAEHISGSPQAFATLMNKKAAELGCTNTNFKNPNGLYDKDHKTSAKD 175

Query: 194 QAILGILLRKNFPQYYKYFSI------------RKFRYRNRIITNHNKLLNK-----MHN 236
            A++   L K +P+Y K  +              +   ++R   N +KL+ K        
Sbjct: 176 LALIMKELSK-YPEYQKISTTLNYQMSPTNNMDAEKTKKSRNFWNEDKLVYKNSKNYYDK 234

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQ 296
             G K GYT  S  + V+        +V  ++     +     +  L          + +
Sbjct: 235 CIGGKAGYTILSLHSFVSVANNNGRKLVVALVHSK-EKTFYDDSKALFEYGFNN--FQQK 291

Query: 297 QTHRKDNLSSTSLKKSLMIKKLKRT 321
           +   K ++          I  L   
Sbjct: 292 KLFSKGDIVENYYLDGTKIPLLASE 316


>gi|324329337|gb|ADY24597.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 423

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 61/297 (20%), Positives = 129/297 (43%), Gaps = 28/297 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 43  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  IL   +   +P+  +    R   + +  
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
           ER  ++ ELI         +  +  + + LS    K+  +    ++  +   K  +K
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSK 339


>gi|229136205|ref|ZP_04264956.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
 gi|228647258|gb|EEL03342.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
          Length = 425

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 64/301 (21%), Positives = 135/301 (44%), Gaps = 37/301 (12%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 45  TGKILHEQNPDELLAIASMSKLIVIYAVLEAIKEGKITWDTKVTISDYAYEVSRNNEFSN 104

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 105 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 164

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  IL  ++   +P+  +    R   + +  
Sbjct: 165 NATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKIIITKYPEMLEDTKQRFRNFPDNH 224

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    +    D  +++V++   +  
Sbjct: 225 PKPIRMENWNWMLPGAAFAYEGADGLKTGSSDTAGYGFTITATRGDLRLISVIIKTKSMD 284

Query: 275 ERDQKALELITSF---LEKKTLKHQQTHR------KDNLSSTSLKKSLMIKKLKRTYSQF 325
           ER  ++  LI       EK+ LK  + ++      K++  + + +K + +   K + S +
Sbjct: 285 ERFTESRALIEYGFNNFEKQKLKIDKNNKISVVKGKEDYVTVAPEKEVTVVTAKGSKSPY 344

Query: 326 K 326
           K
Sbjct: 345 K 345


>gi|38142295|dbj|BAD00950.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
          Length = 413

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 143/343 (41%), Gaps = 33/343 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTK 82
           +++    +  +  L     ++A +     K+ +I ++ N  ++   K   +P   AS+TK
Sbjct: 1   MKKIFLTLLTVSLLGGASTAVAQDFTIAAKH-AIAVEANTGKILYEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S            S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKT 292
           KTG T  +G + V +   K   ++ VV+           R      L+      F  +K 
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKI 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           ++    ++         K+  +           +++  ++  +
Sbjct: 299 VQQGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQS 341


>gi|148988291|ref|ZP_01819738.1| penicillin-binding protein 3/D-alanyl-D-alanine carboxypeptidase
           [Streptococcus pneumoniae SP6-BS73]
 gi|147925972|gb|EDK77046.1| penicillin-binding protein 3/D-alanyl-D-alanine carboxypeptidase
           [Streptococcus pneumoniae SP6-BS73]
          Length = 406

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 73/336 (21%), Positives = 141/336 (41%), Gaps = 33/336 (9%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYII 89
           M  +  L     ++A +     K+ +I ++ N  ++   K   +P   AS+TK++T+Y++
Sbjct: 1   MLTVSLLGGASTAVAQDFTIAAKH-AIAVEANTGKILYEKDATQPVEIASITKLITVYLV 59

Query: 90  FEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           +E L++  + L+T + +S            S + ++ + Y T E+ + A +  SAN  + 
Sbjct: 60  YEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVSSANSAAI 118

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTA 191
           A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D+    +A
Sbjct: 119 ALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSA 178

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIKTGYTRN 247
            D AI+   L K +PQ  +        +    IT+ N +L  M       DG+KTG T  
Sbjct: 179 YDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDK 238

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKTLKHQQTH 299
           +G + V +   K   ++ VV+           R      L+      F  +K ++    +
Sbjct: 239 AGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQQGDAY 298

Query: 300 RKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           +         K+  +I          +++  ++  +
Sbjct: 299 QDSKAPVQDGKEDTVIAVAPEDIYLIERVGNQSSQS 334


>gi|301056857|ref|YP_003795068.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis CI]
 gi|300379026|gb|ADK07930.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 423

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 129/298 (43%), Gaps = 28/298 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 43  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  IL   +   +P+  +    R   + +  
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
           ER  ++ ELI         +  +  + + LS    K+  +    ++  +   K  +K 
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSKN 340


>gi|218906570|ref|YP_002454404.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           AH820]
 gi|300117906|ref|ZP_07055673.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus SJ1]
 gi|218534840|gb|ACK87238.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           AH820]
 gi|298724770|gb|EFI65445.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus SJ1]
          Length = 423

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 129/298 (43%), Gaps = 28/298 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 43  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  IL   +   +P+  +    R   + +  
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
           ER  ++ ELI         +  +  + + LS    K+  +    ++  +   K  +K 
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSKN 340


>gi|168484754|ref|ZP_02709699.1| penicillin-binding protein 3 [Streptococcus pneumoniae CDC1873-00]
 gi|172042076|gb|EDT50122.1| penicillin-binding protein 3 [Streptococcus pneumoniae CDC1873-00]
          Length = 413

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 143/343 (41%), Gaps = 33/343 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTK 82
           +++    +  +  L     ++A +     K+ +I ++ N  ++   K   +P   AS+TK
Sbjct: 1   MKKIFLTLLTVSLLGGASTAVAQDFTIAAKH-AIAVEANTGKILYEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S            S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKT 292
           KTG T  +G + V +   K   ++ VV+           R      L+      F  +K 
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKI 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           ++    ++         K+  +           +++  ++  +
Sbjct: 299 VQQGDAYQDSKTPVQDGKEDTVTAVAPEDIYLIERVGNQSSQS 341


>gi|228969874|ref|ZP_04130604.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228789827|gb|EEM37679.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 374

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 126/283 (44%), Gaps = 29/283 (10%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQ 130
              AS+TKMM+ Y++ E +   KL  + ++ +S+ A      ++ S + L+    +T ++
Sbjct: 1   MAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKE 60

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH------- 183
              A+   SAN  + A  E I+G E  F  +M++K+K+ GM++  + N++GL        
Sbjct: 61  LYEAMAIYSANGATIALVEEIAGKEGNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGY 120

Query: 184 -------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RIITNHNKLL 231
                  D+    +ARD AIL   L ++FPQ      I K  ++        + N N +L
Sbjct: 121 HLEGTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWML 180

Query: 232 N----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
                +   +DG+KTG T  +G     ++      +++VV+   +   R  +  +L    
Sbjct: 181 KGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYG 240

Query: 288 LEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
                +K+   + KD++        +   K K    Q K+  +
Sbjct: 241 FANFEVKN--VYGKDSVVKGHETVRVANAKEKDVVVQTKQAVS 281


>gi|222098861|ref|YP_002532919.1| d-alanyl-d-alanine carboxypeptidase, putative [Bacillus cereus Q1]
 gi|221242920|gb|ACM15630.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus Q1]
          Length = 423

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 62/297 (20%), Positives = 129/297 (43%), Gaps = 28/297 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ VS  A         S 
Sbjct: 43  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNVSDYAYEVSRNNEFSN 102

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  IL   +   +P+  +    R   + +  
Sbjct: 163 NATGLNNADLKGKHPEGTNPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
           ER  ++ ELI         +  +  + + LS    K+  +    ++  +   K  +K
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSK 339


>gi|206975818|ref|ZP_03236729.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           H3081.97]
 gi|217962879|ref|YP_002341457.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           AH187]
 gi|206745912|gb|EDZ57308.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           H3081.97]
 gi|217067221|gb|ACJ81471.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           AH187]
          Length = 423

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 62/297 (20%), Positives = 129/297 (43%), Gaps = 28/297 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ VS  A         S 
Sbjct: 43  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNVSDYAYEVSRNNEFSN 102

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  IL   +   +P+  +    R   + +  
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
           ER  ++ ELI         +  +  + + LS    K+  +    ++  +   K  +K
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSK 339


>gi|229199512|ref|ZP_04326173.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
 gi|228583917|gb|EEK42074.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
          Length = 425

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 61/297 (20%), Positives = 129/297 (43%), Gaps = 28/297 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 45  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 104

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 105 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 164

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  IL   +   +P+  +    R   + +  
Sbjct: 165 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 224

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 225 PKPIRMENWNWMLPGAAFAYEGADGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 284

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
           ER  ++ ELI         +  +  + + LS    K+  +    ++  +   K  +K
Sbjct: 285 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSK 341


>gi|15900755|ref|NP_345359.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           TIGR4]
 gi|148993686|ref|ZP_01823133.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP9-BS68]
 gi|149026353|ref|ZP_01836508.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP23-BS72]
 gi|168485819|ref|ZP_02710327.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           CDC1087-00]
 gi|168490307|ref|ZP_02714506.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP195]
 gi|168493026|ref|ZP_02717169.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           CDC3059-06]
 gi|182683787|ref|YP_001835534.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           CGSP14]
 gi|303255291|ref|ZP_07341362.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           BS455]
 gi|303260392|ref|ZP_07346361.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP-BS293]
 gi|303262749|ref|ZP_07348687.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265038|ref|ZP_07350952.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           BS397]
 gi|303267132|ref|ZP_07353001.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           BS457]
 gi|303269372|ref|ZP_07355143.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           BS458]
 gi|307127577|ref|YP_003879608.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           670-6B]
 gi|14972344|gb|AAK74999.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           TIGR4]
 gi|38142277|dbj|BAD00941.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142279|dbj|BAD00942.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142287|dbj|BAD00946.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142305|dbj|BAD00955.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142307|dbj|BAD00956.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142309|dbj|BAD00957.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142325|dbj|BAD00965.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142329|dbj|BAD00967.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142347|dbj|BAD00976.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142349|dbj|BAD00977.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|55167245|dbj|BAD67449.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|66817134|gb|AAY56863.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|66817138|gb|AAY56865.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|147927766|gb|EDK78789.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP9-BS68]
 gi|147929315|gb|EDK80314.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP23-BS72]
 gi|182629121|gb|ACB90069.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           CGSP14]
 gi|183570937|gb|EDT91465.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           CDC1087-00]
 gi|183571353|gb|EDT91881.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP195]
 gi|183577020|gb|EDT97548.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           CDC3059-06]
 gi|221327900|gb|ACM17686.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|221327904|gb|ACM17688.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|221327908|gb|ACM17690.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|221327914|gb|ACM17693.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|221327916|gb|ACM17694.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|221327922|gb|ACM17697.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|221327924|gb|ACM17698.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|301801696|emb|CBW34402.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
           pneumoniae INV200]
 gi|302597760|gb|EFL64835.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           BS455]
 gi|302636071|gb|EFL66568.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638427|gb|EFL68893.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP-BS293]
 gi|302641090|gb|EFL71466.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           BS458]
 gi|302643340|gb|EFL73618.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           BS457]
 gi|302645398|gb|EFL75631.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           BS397]
 gi|306484639|gb|ADM91508.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           670-6B]
 gi|332077286|gb|EGI87748.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           GA17545]
 gi|332204028|gb|EGJ18095.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           GA47368]
          Length = 413

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 143/343 (41%), Gaps = 33/343 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTK 82
           +++    +  +  L     ++A +     K+ +I ++ N  ++   K   +P   AS+TK
Sbjct: 1   MKKIFLTLLTVSLLGGASTAVAQDFTIAAKH-AIAVEANTGKILYEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S            S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKT 292
           KTG T  +G + V +   K   ++ VV+           R      L+      F  +K 
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKI 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           ++    ++         K+  +           +++  ++  +
Sbjct: 299 VQQGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQS 341


>gi|229142132|ref|ZP_04270657.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
 gi|228641421|gb|EEK97727.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
          Length = 425

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 150/346 (43%), Gaps = 41/346 (11%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVN--------KNQMTGFKQ-D 72
           +Y+++   ++  ++FL  I   + +  HA+ K   I I+            ++   +  D
Sbjct: 1   MYMKKIFSIL--LVFLLSISSLVVTTSHAEEK---IHIEAAAALLFDADTGKILHEQNPD 55

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTT 128
           E    AS++K++ +Y + E ++  K+  +T++ VS  A         S +  ++   +T 
Sbjct: 56  ELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNVSDYAYEVSRNNEFSNVPFEKGRQYTV 115

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-- 186
            +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + NA+GL++ +  
Sbjct: 116 RELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLK 175

Query: 187 ------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RIITNHNK 229
                          +ARD  IL   +   +P+  +    R   + +       + N N 
Sbjct: 176 GKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNHPKPIRMENWNW 235

Query: 230 LLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +L          DG+KTG +  +G+    + +  D  +++V++   +  ER  ++ ELI 
Sbjct: 236 MLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTESRELIE 295

Query: 286 SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
                   +  +  + + LS    K+  +    ++  +   K  +K
Sbjct: 296 YGFNNFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSK 341


>gi|38142333|dbj|BAD00969.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
          Length = 413

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 143/343 (41%), Gaps = 33/343 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTK 82
           +++    +  I  L     ++A +     K+ +I ++ N  ++   K   +P   AS+TK
Sbjct: 1   MKKIFLTLLTISLLGGASTAVAQDFTIAAKH-AIAVEANTGKILYEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S            S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLRDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKT 292
           KTG T  +G + V +   K   ++ VV+           R      L+      F  +K 
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKI 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           ++    ++         K+  +           +++  ++  +
Sbjct: 299 VQQGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQS 341


>gi|229094501|ref|ZP_04225570.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
 gi|229124894|ref|ZP_04254070.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
 gi|228658524|gb|EEL14188.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
 gi|228688885|gb|EEL42715.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
          Length = 441

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 129/298 (43%), Gaps = 28/298 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 61  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 120

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 121 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 180

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  IL   +   +P+  +    R   + +  
Sbjct: 181 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 240

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 241 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 300

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
           ER  ++ ELI         +  +  + + LS    K+  +    ++  +   K  +K 
Sbjct: 301 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSKN 358


>gi|225858672|ref|YP_002740182.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           70585]
 gi|225720794|gb|ACO16648.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           70585]
          Length = 413

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 143/343 (41%), Gaps = 33/343 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTK 82
           +++    +  +  L     ++A +     K+ +I ++ N  ++   K   +P   AS+TK
Sbjct: 1   MKKTFLTLLTVSLLGGASTAVAQDFTIAAKH-AIAVEANTGKILYEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S            S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKT 292
           KTG T  +G + V +   K   ++ VV+           R      L+      F  +K 
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKI 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           ++    ++         K+  +           +++  ++  +
Sbjct: 299 VQQGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQS 341


>gi|299820880|ref|ZP_07052769.1| serine-type D-Ala-D-Ala carboxypeptidase [Listeria grayi DSM 20601]
 gi|299817901|gb|EFI85136.1| serine-type D-Ala-D-Ala carboxypeptidase [Listeria grayi DSM 20601]
          Length = 441

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 71/319 (22%), Positives = 132/319 (41%), Gaps = 38/319 (11%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
           F  +   + A+        ++  I+ +  ++   K  +     AS+TKM+  YI+ E + 
Sbjct: 24  FSLVPNDAQAATTPNVNAKAAFTIEESTGKVLYEKNPDQLLGIASMTKMLDEYILLEKID 83

Query: 95  SKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             KL    ++ +S  A       + S + L+   ++T ++   A+   SAN  + A  E 
Sbjct: 84  QGKLKWTDKVKISGYAHEVSQDTSLSNVPLRNGEFYTVKELYQAMAIYSANGAAIALAEK 143

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-------------QITTARDQAIL 197
           I+GSEK F  LM+ KA  + +    + N +GL++ +                TAR  A L
Sbjct: 144 IAGSEKAFVGLMNEKANSLKLGKHKFVNVTGLNNSDLKGKQQIGGKNSENKMTARGMAKL 203

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM----HNIDGIKTGYTRNS 248
              L   +P   K  S  K  +R        ++N N LL  +      +DG+KTG T  +
Sbjct: 204 AKSLIDTYPDVLKTASTTKLAFRKGTSDQINMSNWNWLLPGLIYGRKGVDGLKTGTTDYA 263

Query: 249 GFNIVTSLRYKDDPIVAVVM---GMPTSQE----RDQKALELITSFLE----KKTLKHQQ 297
           G  +  + +     ++ V++   G  +S +    R ++  +++    +    K+  K  Q
Sbjct: 264 GMCLTATAKQDGMRVITVILHANGGNSSDQHDGTRFKETNKMLDYAFDNFKVKQVAKAGQ 323

Query: 298 THRKDNLSSTSLKKSLMIK 316
             +K    S    K   +K
Sbjct: 324 AVKKPASISVKDGKEDSVK 342


>gi|42784563|ref|NP_981810.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus ATCC
           10987]
 gi|42740495|gb|AAS44418.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus ATCC
           10987]
          Length = 423

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 61/297 (20%), Positives = 129/297 (43%), Gaps = 28/297 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 43  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  IL   +   +P+  +    R   + +  
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
           ER  ++ ELI         +  +  + + LS    K+  +    ++  +   K  +K
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSK 339


>gi|332073203|gb|EGI83682.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           GA17570]
          Length = 413

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 143/343 (41%), Gaps = 33/343 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTK 82
           +++    +  +  L     ++A +     K+ +I ++ N  ++   K   +P   AS+TK
Sbjct: 1   MKKIFLTLLTVSLLGGASTAVAQDFTIAAKH-AIAVEANTGKILYEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S            S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKT 292
           KTG T  +G + V +   K   ++ VV+           R      L+      F  +K 
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTTTSSLMDYISSTFTLRKI 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           ++    ++         K+  +           +++  ++  +
Sbjct: 299 VQQGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQS 341


>gi|168490961|ref|ZP_02715104.1| penicillin-binding protein 3 [Streptococcus pneumoniae CDC0288-04]
 gi|221231651|ref|YP_002510803.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae ATCC
           700669]
 gi|225854380|ref|YP_002735892.1| penicillin-binding protein 3 [Streptococcus pneumoniae JJA]
 gi|38142283|dbj|BAD00944.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142293|dbj|BAD00949.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142313|dbj|BAD00959.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142321|dbj|BAD00963.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142323|dbj|BAD00964.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142343|dbj|BAD00974.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142355|dbj|BAD00980.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|66817132|gb|AAY56862.1| penicillin-binding protein 3 [Streptococcus pneumoniae ATCC 700669]
 gi|183574667|gb|EDT95195.1| penicillin-binding protein 3 [Streptococcus pneumoniae CDC0288-04]
 gi|220674111|emb|CAR68630.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
           pneumoniae ATCC 700669]
 gi|221327902|gb|ACM17687.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|221327910|gb|ACM17691.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|225723264|gb|ACO19117.1| penicillin-binding protein 3 [Streptococcus pneumoniae JJA]
          Length = 413

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 143/343 (41%), Gaps = 33/343 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTK 82
           +++    +  +  L     ++A +     K+ +I ++ N  ++   K   +P   AS+TK
Sbjct: 1   MKKIFLTLLTVSLLGGASTAVAQDFTIAAKH-AIAVEANTGKILYEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S            S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKT 292
           KTG T  +G + V +   K   ++ VV+           R      L+      F  +K 
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKI 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           ++    ++         K+  +           +++  ++  +
Sbjct: 299 VQQGDAYQDSKTPVQDGKEDTVTAVAPEDIYLIERVGNQSSQS 341


>gi|118471047|ref|YP_886038.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str.
           MC2 155]
 gi|118172334|gb|ABK73230.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str.
           MC2 155]
          Length = 397

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 62/305 (20%), Positives = 115/305 (37%), Gaps = 20/305 (6%)

Query: 37  LSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFE 91
           LS   +  A      P      + IV D++   +   +    R+ PAS+ K++T      
Sbjct: 71  LSGCGVITAPNTPPVPEDVSAEAWIVADMDTGDVIAARDPHGRHRPASIIKVLTATAAL- 129

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
                +L+LN ++  ++  A    +++ +     +T    +  L+  S ND + A    +
Sbjct: 130 ----NELNLNKRVAGTQDDANAEGTRVGVGPGGQYTINDLLHGLLMYSGNDAAHALAMQL 185

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            G +      ++  A K+G ++T     SGL      T+A D A+      +N P +   
Sbjct: 186 GGWDPA-LQKLNTLAAKLGGRDTRAATPSGLDGPGMSTSAYDIALFYRYAWQN-PVFADI 243

Query: 212 FSIRKFRYRNR-----IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
              + +++  R      I N NKLL       G KTGYT ++G   V +       ++AV
Sbjct: 244 VHTQSYQFPGRDGGSYPIENDNKLLANYPGALGGKTGYTDDAGQTFVGAAERDGRRLIAV 303

Query: 267 VM-GMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQF 325
           ++ G        ++A  L+       T    +     +   +   K        +  S  
Sbjct: 304 LLKGTRVPIAPWEQAARLLDYGF--ATPPGTKVGTLVDPDPSLAPKQAEEPSPAQAASVL 361

Query: 326 KKIDA 330
              DA
Sbjct: 362 PPADA 366


>gi|49481295|ref|YP_039380.1| D-alanyl-D-alanine carboxypeptidase (serine-type D-Ala-D-Ala
           carboxypeptidase) [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|228930397|ref|ZP_04093398.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228949115|ref|ZP_04111385.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|49332851|gb|AAT63497.1| D-alanyl-D-alanine carboxypeptidase (serine-type D-Ala-D-Ala
           carboxypeptidase) [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|228810556|gb|EEM56907.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228829244|gb|EEM74880.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 423

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 129/298 (43%), Gaps = 28/298 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 43  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  IL   +   +P+  +    R   + +  
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
           ER  ++ ELI         +  +  + + LS    K+  +    ++  +   K  +K 
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVAQGKEDQVTVAPEKEITVIAKKGSKN 340


>gi|30265411|ref|NP_847788.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus anthracis
           str. Ames]
 gi|47530965|ref|YP_022314.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188225|ref|YP_031478.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
           Sterne]
 gi|165871278|ref|ZP_02215927.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A0488]
 gi|167635722|ref|ZP_02394032.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A0442]
 gi|170688221|ref|ZP_02879432.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A0465]
 gi|170708041|ref|ZP_02898489.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A0389]
 gi|190568901|ref|ZP_03021803.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           Tsiankovskii-I]
 gi|227818157|ref|YP_002818166.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. CDC 684]
 gi|229601349|ref|YP_002869603.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A0248]
 gi|254687169|ref|ZP_05151027.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. CNEVA-9066]
 gi|254724048|ref|ZP_05185833.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A1055]
 gi|254742225|ref|ZP_05199912.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. Kruger B]
 gi|254755864|ref|ZP_05207896.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. Vollum]
 gi|254761576|ref|ZP_05213596.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. Australia 94]
 gi|30260089|gb|AAP29274.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. Ames]
 gi|47506113|gb|AAT34789.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49182152|gb|AAT57528.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus anthracis
           str. Sterne]
 gi|164712945|gb|EDR18473.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A0488]
 gi|167528831|gb|EDR91588.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A0442]
 gi|170127014|gb|EDS95893.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A0389]
 gi|170667914|gb|EDT18666.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A0465]
 gi|190559968|gb|EDV13951.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           Tsiankovskii-I]
 gi|227006453|gb|ACP16196.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. CDC 684]
 gi|229265757|gb|ACQ47394.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A0248]
          Length = 423

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 127/298 (42%), Gaps = 28/298 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 43  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162

Query: 178 NASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL               +     +ARD  IL   +   +P+  +    R   + +  
Sbjct: 163 NATGLNNTDLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
           ER  ++ ELI         +  +  + + LS    K+  +    ++  +   K  +K 
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVAQGKEDQVTVAPEKEITVIAKKGSKN 340


>gi|47570508|ref|ZP_00241136.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
 gi|47552816|gb|EAL11239.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
          Length = 423

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 61/297 (20%), Positives = 129/297 (43%), Gaps = 28/297 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 43  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  IL   +   +P+  +    R   + +  
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
           ER  ++ ELI         +  +  + + LS    K+  +    ++  +   K  +K
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSK 339


>gi|302035815|ref|YP_003796137.1| putative d-alanyl-D-alanine carboxypeptidase [Candidatus Nitrospira
           defluvii]
 gi|300603879|emb|CBK40211.1| putative D-alanyl-D-alanine carboxypeptidase [Candidatus Nitrospira
           defluvii]
          Length = 309

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 114/244 (46%), Gaps = 16/244 (6%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P +S ++ ++         + E R  PASLTK+M+  +I EY      HL+ ++ VS  A
Sbjct: 64  PAHSILLKELKTGTTLYQFESEKRLSPASLTKIMSALVILEYG-----HLDDEVTVSPKA 118

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A  + + L L+    F  E  + A++  SAND   A  E + G E +F  LM+ KA  + 
Sbjct: 119 ARAHKTHLRLRTGQIFRLEDLLKAMLIVSANDACLAASEHVGGDEARFVDLMNAKAAALQ 178

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF------RYRNRII 224
           + NT + NA G       +TA D A L  +   + P + +     +        +R  ++
Sbjct: 179 LHNTHFSNACGFDAPEHYSTAEDLAKLSEIAL-HHPVFKELVREEREIIMPINEHRAYVL 237

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
              N+LL ++  + G+KTG+T  +G  ++  +      ++ V++    S+ R   A  LI
Sbjct: 238 RTTNRLLGRIPGVQGVKTGFTSKAGRCLIAKVSQDGSDLLLVIL---NSKRRWNTATSLI 294

Query: 285 TSFL 288
              L
Sbjct: 295 NYGL 298


>gi|182416870|ref|ZP_02948256.1| D-alanyl-D-alanine carboxypeptidase [Clostridium butyricum 5521]
 gi|237667877|ref|ZP_04527861.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182379332|gb|EDT76831.1| D-alanyl-D-alanine carboxypeptidase [Clostridium butyricum 5521]
 gi|237656225|gb|EEP53781.1| putative D-alanyl-D-alanine carboxypeptidase DacB [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 300

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 9/223 (4%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +I +D   +Q+   +      P AS TK++T  I  E     +  LN  + +SK A++  
Sbjct: 54  AIALDKESHQVLYEQNAYEIVPMASTTKILTSLIAIE-----QDDLNAPVTISKKASSIR 108

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            SK+  KE    T ++ I  L+ +S ND + A  E I GS + FA +M++ A+ IG+ ++
Sbjct: 109 GSKVGYKENEVITLKELIFGLMFKSGNDAAIAIAEHIGGSVEGFAEIMNHYARGIGILDS 168

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSIRKFRYR-NRIITNHNKLL 231
            +++  GL      ++A D A+L         F +     SI K +Y   R   N NK+L
Sbjct: 169 HFESPHGLDSSQHYSSAYDLALLTCKGMDYDLFREVVGSKSISKDKYNFTRDYNNINKIL 228

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
            K+   +G+KTGYT  +G  +V+S+   +  I+ VV+  P   
Sbjct: 229 WKIPGANGVKTGYTGQAGKCLVSSVNNNNKDIIIVVLNCPDRW 271


>gi|299143329|ref|ZP_07036409.1| putative D-alanyl-D-alanine carboxypeptidase [Peptoniphilus sp.
           oral taxon 386 str. F0131]
 gi|298517814|gb|EFI41553.1| putative D-alanyl-D-alanine carboxypeptidase [Peptoniphilus sp.
           oral taxon 386 str. F0131]
          Length = 436

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 69/284 (24%), Positives = 126/284 (44%), Gaps = 17/284 (5%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           + I+ D    ++      DE +  AS +K+++++++ + ++   +  N  + +   ++  
Sbjct: 75  AYILGDYRSGKILESYNIDEVKAMASTSKLVSIFVVMDKIKDGTIKKNDMVIIDHESSLL 134

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   LKE    T  Q I A +  S ND  TA  + ISGS++ F  LM+ K +++G++N
Sbjct: 135 TGSSYKLKENDQKTVWQLIKAALVVSGNDAITALAKHISGSKEAFVSLMNKKCQELGLKN 194

Query: 174 TIYKNASGLHD----KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII--TNH 227
               N +GL D         T R+  IL   L K +P+  +  S+ +    +R     N 
Sbjct: 195 AHMVNPTGLTDYMVEDYNKMTTREMFILARELIKAYPELLEITSLTEIAEPDRNYLEYNT 254

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD-------DPIVAVVMGMPTSQERDQKA 280
           N  L  +  +DG+KTGYT  +G  ++ +   K          ++ V++G  T  +R   A
Sbjct: 255 NPALGIIKGVDGLKTGYTNAAGRCLIVTGFRKGDNTHTKDTRLIGVIIGSRTDWQRYVSA 314

Query: 281 LELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
            +LI   L+K            +   T ++     KK    Y +
Sbjct: 315 TKLIGEGLDKY---KYTVIGNPDEPVTQIEVENAAKKSIDVYEK 355


>gi|196045526|ref|ZP_03112757.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           03BB108]
 gi|225867373|ref|YP_002752751.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           03BB102]
 gi|196023733|gb|EDX62409.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           03BB108]
 gi|225787013|gb|ACO27230.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           03BB102]
          Length = 423

 Score =  208 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 61/297 (20%), Positives = 129/297 (43%), Gaps = 28/297 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 43  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  IL   +   +P+  +    R   + +  
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
           ER  ++ ELI         +  +  + + LS    K+  +    ++  +   K  +K
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSK 339


>gi|171777393|ref|ZP_02919182.1| hypothetical protein STRINF_00009 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283273|gb|EDT48697.1| hypothetical protein STRINF_00009 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 410

 Score =  208 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 74/332 (22%), Positives = 144/332 (43%), Gaps = 25/332 (7%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTK 82
           +++   ++  +L      ++     +   K+ +I ++ +  ++   K        AS+TK
Sbjct: 1   MKKVFAVLALLLAFIGNKVAADDTFNVAAKH-AIAVEASTGKVLYEKDATTPDGIASMTK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+ ++ +    L  +T++P+S  A    A  + S + ++ + Y T EQ + A +  
Sbjct: 60  ILTVYLTYKEIDKGNLSWDTKVPISDYAYDLTANSDASNVPMEAREY-TVEQLVNAAMVA 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-------------- 184
           SAN  + A  E I G+E KF  +M  + ++ G+ +    NASGL++              
Sbjct: 119 SANSAAIALAEKIGGTESKFVDMMQTQLQEWGINDAKLFNASGLNNSYLGDNIYPGSSST 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
                +ARD AI+   L   +P   K  +     +    +  +N +L  M      +DG+
Sbjct: 179 DENTLSARDVAIIAQHLITEYPDVLKISNQTTADFEGSTMNTYNYMLKGMPYERDGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           KTG T  +G + V +       I++VVM     QE +    E   + L+     ++ T  
Sbjct: 239 KTGTTELAGASFVATSTENGMRIISVVMNADGWQENEFARFEATNALLDYVKSNYEMTTL 298

Query: 301 KDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
            D   ST   K+ +I   ++T       + K 
Sbjct: 299 VDAGESTKNSKAKVIDGKEKTVPAVASQELKV 330


>gi|196041013|ref|ZP_03108310.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           NVH0597-99]
 gi|196028181|gb|EDX66791.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           NVH0597-99]
          Length = 423

 Score =  208 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 61/297 (20%), Positives = 129/297 (43%), Gaps = 28/297 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 43  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  IL   +   +P+  +    R   + +  
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
           ER  ++ ELI         +  +  + + LS    K+  +    ++  +   K  +K
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSK 339


>gi|225861235|ref|YP_002742744.1| penicillin-binding protein 3 [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298255726|ref|ZP_06979312.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298503122|ref|YP_003725062.1| serine family D-Ala-D-Ala carboxypeptidase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|38142303|dbj|BAD00954.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142335|dbj|BAD00970.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142337|dbj|BAD00971.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142341|dbj|BAD00973.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142353|dbj|BAD00979.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|225727841|gb|ACO23692.1| penicillin-binding protein 3 [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238717|gb|ADI69848.1| serine family D-Ala-D-Ala carboxypeptidase [Streptococcus
           pneumoniae TCH8431/19A]
          Length = 413

 Score =  208 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 143/343 (41%), Gaps = 33/343 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTK 82
           +++    +  +  L     ++A +     K+ +I ++ N  ++   K   +P   AS+TK
Sbjct: 1   MKKIFLTLLTVSLLGGASTAVAQDFTIAAKH-AIAVEANTGKILYEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S            S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKT 292
           KTG T  +G + V +   K   ++ VV+           R      L+      F  +K 
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKI 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           ++    ++         K+  +           +++  ++  +
Sbjct: 299 VQQGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQS 341


>gi|530915|gb|AAA68436.1| Highly similar to the E.coli YeeC, DacA and DacC products; putative
           [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 281

 Score =  208 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 93/174 (53%), Gaps = 1/174 (0%)

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           ++LKE    +       LI  S ND   A  ++I+G + +F  +M++  KK+ +Q+T ++
Sbjct: 1   MFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFE 60

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHN 236
              GL    Q ++A D A+L   +    P++Y  +S +   +      N N LL  K  +
Sbjct: 61  TVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMH 120

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           IDG+KTG+T  +GFN++ S       ++AVVMG  +S+ R+++A +L+    + 
Sbjct: 121 IDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQN 174


>gi|38142331|dbj|BAD00968.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
          Length = 413

 Score =  208 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 143/343 (41%), Gaps = 33/343 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTK 82
           +++    +  +  L     ++A +     K+ +I ++ N  ++   K   +P   AS+TK
Sbjct: 1   MKKIFLTLLTVSLLGGASTAVAQDFTIAAKH-AIAVEANTGKILYEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S            S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKT 292
           KTG T  +G + V +   K   ++ VV+           R      L+      F  +K 
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKI 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           ++    ++         K+  +           +++  ++  +
Sbjct: 299 VQQGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQS 341


>gi|262283277|ref|ZP_06061043.1| penicillin-binding protein 3 [Streptococcus sp. 2_1_36FAA]
 gi|262260768|gb|EEY79468.1| penicillin-binding protein 3 [Streptococcus sp. 2_1_36FAA]
          Length = 412

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 77/325 (23%), Positives = 151/325 (46%), Gaps = 32/325 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
           +++ I L+   LF S   +  A +     K ++I  D+N  ++   K+   P    SLTK
Sbjct: 1   MKKIIVLLFICLFCSFCPLVSADDFDVAAK-NAIAFDLNTGKILYEKEATSPVPIGSLTK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           +++ Y++++ ++++K+ +++Q+ +S+ A       + S L L + +Y + E+ + A +  
Sbjct: 60  LLSAYLVYDAIKAEKITMDSQVEISEYALKLTTNYDISNLPLDKGSY-SVEELLEASLIA 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           +AN  + A  E ISGSEKKF  LM  K K+ G+ +    N++GL+              D
Sbjct: 119 NANSATIALAEKISGSEKKFVDLMKAKLKEWGISDAKIVNSTGLNNSHLGDNIYPNSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
           +    +A D A++   L K++PQ         F +    + + N +L  M      +DG+
Sbjct: 179 EENQLSAYDMALISYHLIKDYPQVLNITEKTSFNFDGLEVNSSNYMLKDMPSYRKGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-------DQKALELITSFLEKKTL 293
           K G +   G + + S   +D  ++ VV+ +  ++E            ++ I +     TL
Sbjct: 239 KIGISDQGGLSFIASANERDMRLITVVLNVENAEEDIKALFLATASVMDYIANNFVVTTL 298

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKL 318
             + T  +D+  S        IK +
Sbjct: 299 AEKGTPYEDSHISIINGNEDQIKAI 323


>gi|118480420|ref|YP_897571.1| D-alanyl-D-alanine carboxypeptidase A [Bacillus thuringiensis str.
           Al Hakam]
 gi|118419645|gb|ABK88064.1| D-Ala-D-Ala carboxypeptidase A, Serine peptidase, MEROPS family S11
           [Bacillus thuringiensis str. Al Hakam]
          Length = 441

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 61/297 (20%), Positives = 129/297 (43%), Gaps = 28/297 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 61  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 120

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 121 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 180

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  IL   +   +P+  +    R   + +  
Sbjct: 181 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 240

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 241 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 300

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
           ER  ++ ELI         +  +  + + LS    K+  +    ++  +   K  +K
Sbjct: 301 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSK 357


>gi|291542266|emb|CBL15376.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus bromii L2-63]
          Length = 374

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 77/325 (23%), Positives = 132/325 (40%), Gaps = 31/325 (9%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLT 81
           + I  +     +  +++   +     P  S+   ++   + N +   K  DE   PAS T
Sbjct: 2   KKIISLAVCFVMPFVLMGAKNAEDTPPTTSAQAFVLYCPDNNTVICSKNADERMKPASTT 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  I  E         N+++   +       S +YLK             ++  S N
Sbjct: 62  KIMTSLITLEEAA----SCNSEVTFKQEMVA-EGSSMYLKVGEKVRLSDLASGMMMASGN 116

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D + A    ISGS +KF+  M+ KAK+IGM NT +   SGL D N  ++A+D A+L    
Sbjct: 117 DAANAAAYTISGSSEKFSQRMNEKAKQIGMTNTNFVTPSGLDDDNHYSSAKDMALLMSYA 176

Query: 202 RKNFPQYYKYFSIRKFR-------YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
            +N   +    + +           +     NHN+LL+      G KTGYT  +G  +V+
Sbjct: 177 LEN-DDFANLTAKKSVTVEFLEPKTKKTAYANHNRLLSLYPYCTGGKTGYTTVAGRCLVS 235

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK-KTLKHQQT----------HRKDN 303
           S +     +V V +     +      + L     EK + +  +              KD+
Sbjct: 236 SAKKDGVTLVCVTL---NDRNDWNDHISLYDYAFEKYRGVDCKDADFCADIPCVGGDKDS 292

Query: 304 LSSTSLKKSLMIKKLKRTYSQFKKI 328
           ++ T  K + ++ K +      KKI
Sbjct: 293 VTVTGEKNNTIVLKREDCDKIKKKI 317


>gi|65317369|ref|ZP_00390328.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A2012]
          Length = 441

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 127/298 (42%), Gaps = 28/298 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 61  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 120

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 121 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 180

Query: 178 NASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL               +     +ARD  IL   +   +P+  +    R   + +  
Sbjct: 181 NATGLNNTDLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 240

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 241 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 300

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
           ER  ++ ELI         +  +  + + LS    K+  +    ++  +   K  +K 
Sbjct: 301 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVAQGKEDQVTVAPEKEITVIAKKGSKN 358


>gi|331092072|ref|ZP_08340903.1| hypothetical protein HMPREF9477_01546 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402273|gb|EGG81844.1| hypothetical protein HMPREF9477_01546 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 423

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 133/294 (45%), Gaps = 30/294 (10%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+IV+D+    +   K  DE RYPAS+TK++T  +  E  Q     +   +  S+ +   
Sbjct: 67  SAIVMDMKTGAILYAKGIDEERYPASITKILTALVAIENSQ-----MTDMVKFSEESIQS 121

Query: 114 ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                + + +K     T +  + AL+  SAN+V+ A GE + G+ + F  +M++KAK++G
Sbjct: 122 LEPGYAHIAMKAGEEITMKDALHALMLASANEVAYAIGETVGGTHENFIKMMNDKAKELG 181

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-------NRI 223
             +T + N +G+ D+   T+ARD A++      +  +        ++           RI
Sbjct: 182 CTHTHFINTNGMFDEQHYTSARDMALIARAAF-SHQELLDIVQTLQYTIPPTNMESEPRI 240

Query: 224 ITNHNKLL--NKMHN--IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
               +K+L   K H+    G KTGYT  +   +VT +   D  IVAV+M   + ++  + 
Sbjct: 241 FQQKHKMLLNGKYHDNRCIGGKTGYTEKAYNTLVTVMEQGDMEIVAVIM--RSRRDTFED 298

Query: 280 ALELITSFLEK-------KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
             ++                 K  +    D  +  +L K++   +L R Y + K
Sbjct: 299 TKKICDYAFNNFREVNISANEKSDKVSDIDGEACVTLPKNIEFNQLSRQYEKDK 352


>gi|52140174|ref|YP_086656.1| D-alanyl-D-alanine carboxypeptidase (serine-type D-Ala-D-Ala
           carboxypeptidase) [Bacillus cereus E33L]
 gi|51973643|gb|AAU15193.1| D-alanyl-D-alanine carboxypeptidase (serine-type D-Ala-D-Ala
           carboxypeptidase) [Bacillus cereus E33L]
          Length = 418

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 60/297 (20%), Positives = 130/297 (43%), Gaps = 28/297 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 43  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  IL   +   +P+  +    R   + +  
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
           ER  ++ ELI         +  + ++ + +S    K+  +    ++  +   K  +K
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKINKNNTISVVQGKEDQVTVTPEKEITVIAKKGSK 339


>gi|228918002|ref|ZP_04081534.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841667|gb|EEM86779.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 423

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 129/298 (43%), Gaps = 28/298 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 43  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  IL   +   +P+  +    R   + +  
Sbjct: 163 NATGLNNADLKGKHPKGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
           ER  ++ ELI         +  +  + + LS    K+  +    ++  +   K  +K 
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVAQGKEDQVTVAPEKEITVIAKKGSKN 340


>gi|229034027|ref|ZP_04188975.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
 gi|228728290|gb|EEL79318.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
          Length = 423

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 59/297 (19%), Positives = 129/297 (43%), Gaps = 28/297 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 43  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  +L   +   +P+  +    R   + +  
Sbjct: 163 NATGLNNADLKGKHPEGTDPNGENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 222

Query: 222 ---RIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 223 PKPIRMENWNWMLPGAAFSYEGADGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 282

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
           ER  ++ ELI         +  +  + + +S    K+  +    ++  +   K  +K
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKHNTISVVKGKEDQVTVTPEKEITVIAKKGSK 339


>gi|227892889|ref|ZP_04010694.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus ultunensis DSM
           16047]
 gi|227865295|gb|EEJ72716.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus ultunensis DSM
           16047]
          Length = 432

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 74/313 (23%), Positives = 139/313 (44%), Gaps = 45/313 (14%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYS------------SIVIDVNKNQMTGFKQ 71
           ++R    +  ++ L+   ++  + +HA    S            +I ID N  Q+   K 
Sbjct: 7   VKRAFISLVAVISLASCGVAFTTPVHADATSSYHADQLNLDVKSAIAIDSNSGQILYAKN 66

Query: 72  -DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKTAATQNPSKLYLKEKTYF 126
            D+    AS+TK++T+Y+  + +++KKL  + ++    P+ K A     S + LK    +
Sbjct: 67  ADKTLPIASMTKLVTVYLTLQAIKNKKLSWDQKVKPTAPIVKVANNTEYSNVPLKMGHSY 126

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           T +Q   A +  SAN  +   G+ I+GS+K F   M  + KK G+++     A GL + N
Sbjct: 127 TIKQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRQQVKKWGIEDAKIYTACGLPNGN 186

Query: 187 --------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN----RIITNHN 228
                            +A+D AI+G  L K+FP+      +    +++      + N N
Sbjct: 187 LGKDAYPGINKNAENTMSAKDMAIIGQNLIKDFPEVLNTTKLAHLDFKDNGKTTKMANFN 246

Query: 229 KLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQ 278
            +L      +K + +DG+KTG T  +G   + ++ +    ++ VVMG      T   R  
Sbjct: 247 WMLKGLSQYDKAYPVDGLKTGTTDAAGACFIGTVEHSGARLITVVMGARHRDGTDPSRFI 306

Query: 279 KALELITSFLEKK 291
           +  +L+     + 
Sbjct: 307 QTKKLMNFIFNQY 319


>gi|301299390|ref|ZP_07205670.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852996|gb|EFK80600.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 402

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 62/264 (23%), Positives = 114/264 (43%), Gaps = 25/264 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I +D    Q+   K D+  YP AS++K++T YI+ + +   ++   T++  + T  
Sbjct: 25  AKSAIAVDAKTGQIIYAKDDKQTYPVASMSKLLTAYILLQAIHKGEITWETRVTPTATEV 84

Query: 112 T----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                   + + L+E   +T  Q   A++  SAN  +   G  ISG++ KF   M   AK
Sbjct: 85  DISNNTELTNVPLQEGHSYTIRQLYQAMLVGSANAATMLIGNAISGTQTKFIDKMRETAK 144

Query: 168 KIGMQNTIYKNASGLHDK--------------NQITTARDQAILGILLRKNFPQYYKYFS 213
            +G+ +    +A+GL  K                  + RD AI+   L K +P+  +   
Sbjct: 145 SLGITDAKIYSANGLTAKYLGDEIYPNTDENAENEFSVRDMAIISQKLIKEYPEILETTK 204

Query: 214 IRKFRYRN----RIITNHNKLLNKMHN--IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           + K  + +      + N N+LL    N  +DG+KTG +  +G+   ++       I+ V+
Sbjct: 205 LTKIDFNDNGEITTVNNTNELLQDDSNLEVDGLKTGTSDAAGYCFASTTNKDGHRIITVI 264

Query: 268 MGMPTSQERDQKALELITSFLEKK 291
            G   +  R  +   L+       
Sbjct: 265 AGAKDNDARFDQTKNLLNYIYNNY 288


>gi|149010495|ref|ZP_01831866.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP19-BS75]
 gi|147764976|gb|EDK71905.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP19-BS75]
          Length = 413

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 143/343 (41%), Gaps = 33/343 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTK 82
           +++    +  +  L     ++A +     K+ +I ++ N  ++   K   +P   AS+TK
Sbjct: 1   MKKIFLTLLTVSLLGGASTAVAQDFTIAAKH-AIAVEANTGKILYEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S            S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEVSNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKT 292
           KTG T  +G + V +   K   ++ VV+           R      L+      F  +K 
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKI 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           ++    ++         K+  +           +++  ++  +
Sbjct: 299 VQQGDAYQDSKTPVQDGKEDTVTAVAPEDIYLIERVGNQSSQS 341


>gi|295094890|emb|CBK83981.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus sp. ART55/1]
          Length = 376

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 57/258 (22%), Positives = 112/258 (43%), Gaps = 21/258 (8%)

Query: 53  KYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++I++D     +   K  DE R  AS TK++T  +  E       +L   +  S  A+
Sbjct: 40  ARNAILLDGETGDILYDKCSDEHRPNASTTKILTCILAIECG-----NLADDVTASSYAS 94

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                +L +++   +T E  + A++  S ND +    E I GS + FA +M+ KA++IG 
Sbjct: 95  KMPEVRLGVRDGEKYTLEDMLYAMMLESYNDAAVVIAEHIGGSVQHFAEMMNAKAEEIGC 154

Query: 172 QNTIYKNASGLHDKN----QITTARDQAILGILLRKNFP---QYYKYFSIRKFRY----- 219
            +T +   +GL  ++      T+A D   +        P   ++ K    + + +     
Sbjct: 155 HSTYFITPNGLDAQDENGVHGTSAEDLVRIMRYCILISPQKDEFLKITRTKSYTFTDNTG 214

Query: 220 -RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM--PTSQER 276
            R     NHN  L+ M      KTG+T ++G+  + +   +    +  ++G   P ++  
Sbjct: 215 NRTFACINHNAFLDMMPCALSGKTGFTCDAGYCYIGAAEVEGHTYIWALLGCGWPNNKTY 274

Query: 277 DQKALELITSFLEKKTLK 294
             K    + +F ++ T+ 
Sbjct: 275 KWKDSRALVAFAQEHTIY 292


>gi|228988616|ref|ZP_04148702.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771067|gb|EEM19547.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 423

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 61/297 (20%), Positives = 129/297 (43%), Gaps = 28/297 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 43  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  IL   +   +P+  +    R   + +  
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
           ER  ++ ELI         +  +  + + LS    K+  +    ++  +   K  +K
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSK 339


>gi|148984605|ref|ZP_01817873.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP3-BS71]
 gi|147922996|gb|EDK74111.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP3-BS71]
          Length = 406

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 73/336 (21%), Positives = 140/336 (41%), Gaps = 33/336 (9%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYII 89
           M  +  L     ++A +     K+ +I ++ N  ++   K   +P   AS+TK++T+Y++
Sbjct: 1   MLTVSLLGGASTAVAQDFTIAAKH-AIAVEANTGKILYEKDATQPVEIASITKLITVYLV 59

Query: 90  FEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           +E L++  + L+T + +S            S + ++ + Y T E+ + A +  SAN  + 
Sbjct: 60  YEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVSSANSAAI 118

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTA 191
           A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D+    +A
Sbjct: 119 ALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSA 178

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIKTGYTRN 247
            D AI+   L K +PQ  +        +    IT+ N +L  M       DG+KTG T  
Sbjct: 179 YDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDK 238

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKTLKHQQTH 299
           +G + V +   K   ++ VV+           R      L+      F  +K ++    +
Sbjct: 239 AGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQQGDAY 298

Query: 300 RKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           +         K+  +           ++I  ++  +
Sbjct: 299 QDSKAPVQDGKEDTVTAVAPEDIYLIEQIGNQSSQS 334


>gi|269928430|ref|YP_003320751.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787787|gb|ACZ39929.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sphaerobacter
           thermophilus DSM 20745]
          Length = 326

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 58/262 (22%), Positives = 106/262 (40%), Gaps = 20/262 (7%)

Query: 39  IIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQ 94
           I ++  A    A+P  ++   IV+D     +   ++   R   ASLTKM+T  +  E   
Sbjct: 16  IHIVLTARPAAARPDVAARNWIVMDGASGDVLDAQEPHQRTAIASLTKMLTALVAVE--- 72

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
             +  L   + V ++   +  S   L+E    +    +  L+  S ND + A    + GS
Sbjct: 73  --RADLEQVVTVMRSDLIR-GSSARLREGERLSLRTLLYGLLLPSGNDAALAIARAVGGS 129

Query: 155 EKK--------FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
                      F   M+ +A  +G+ +T   N  GL  ++   +A D A++   + ++ P
Sbjct: 130 PHADDQAARGRFIDWMNERAVSLGLTDTRVVNPHGLDARDHFGSAHDLALVTRAVLES-P 188

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
                F    +        + NKL  +   I G KTG+TR +G  +V         ++ V
Sbjct: 189 VLAPIFGAHDYSGEGHRYESTNKLWERYPGIIGGKTGWTRAAGHCLVEVAERDGRRVIVV 248

Query: 267 VMGMPTSQERDQKALELITSFL 288
           ++G  + +  D  A  L+    
Sbjct: 249 LLGSTSERWYD-DATVLLDHGF 269


>gi|225374872|ref|ZP_03752093.1| hypothetical protein ROSEINA2194_00495 [Roseburia inulinivorans DSM
           16841]
 gi|225213255|gb|EEG95609.1| hypothetical protein ROSEINA2194_00495 [Roseburia inulinivorans DSM
           16841]
          Length = 410

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 115/289 (39%), Gaps = 27/289 (9%)

Query: 22  IYIQRNIQ-LMGKILFLSIIMISMASELHAKPK----YSSIVIDVNKNQMTGFKQ-DEPR 75
           + ++R I  ++  I+  +     MA++   +       +++++D    ++   K   E  
Sbjct: 9   LGLKRAISFIICLIILFTYPTKLMAAQEPPEEAELFAKAAVLMDGGSGRILYSKNGSEAL 68

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
             AS TK++T  I  E        L     VS  AA      L       F  +  I A+
Sbjct: 69  ANASTTKILTCIIALENCD-----LEQITEVSVQAAKAPKVHLGAPAGQKFRMKDLIYAM 123

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN----QITTA 191
           +  S ND +    E ++G+ + F+ LM++ AKKIG ++T +   +GL  +       TTA
Sbjct: 124 MLESFNDCAVVIAEQVAGTTEHFSKLMNDYAKKIGCKDTFFITPNGLDAQKDIQFHHTTA 183

Query: 192 RDQAILGILLRKNFP---QYYKYFSIRKFRYRN------RIITNHNKLLNKMHNIDGIKT 242
            D A +     K  P   Q+ K     ++ + +          NHN  L  M      KT
Sbjct: 184 EDLAQIMRYCIKESPKADQFLKITGEAEYTFTDVSGKYAYHCYNHNAFLKMMDGAVSGKT 243

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER---DQKALELITSFL 288
           G+T N+G+  V +L       +  ++       R        +L+   L
Sbjct: 244 GFTGNAGYCYVGALEQNGKTYIVALLACGWPNNRTYKWSDTRKLMEYGL 292


>gi|167640402|ref|ZP_02398666.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A0193]
 gi|177651865|ref|ZP_02934448.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A0174]
 gi|254735510|ref|ZP_05193217.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. Western North America USA6153]
 gi|167511622|gb|EDR87004.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A0193]
 gi|172082569|gb|EDT67633.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A0174]
          Length = 423

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 127/298 (42%), Gaps = 28/298 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 43  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162

Query: 178 NASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL               +     +ARD  IL   +   +P+  +    R   + +  
Sbjct: 163 NATGLNNTDLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
           ER  ++ ELI         +  +  + + LS    ++  +    ++  +   K  +K 
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVAQGREDQVTVAPEKEITVIAKKGSKN 340


>gi|163943071|ref|YP_001647955.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
 gi|163865268|gb|ABY46327.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
          Length = 423

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 64/301 (21%), Positives = 135/301 (44%), Gaps = 37/301 (12%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 43  TGKILHEQNPDELLAIASMSKLIVIYAVLEAIKEGKITWDTKVTISDYAYEVSRNNEFSN 102

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  IL   +   +P+  +    R   + +  
Sbjct: 163 NATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKTIITKYPEMLEDTKQRFRNFPDNH 222

Query: 222 ---RIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 223 PKPIRMENWNWMLPGAAFSYEGADGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 282

Query: 275 ERDQKALELITSF---LEKKTLKHQQTHR------KDNLSSTSLKKSLMIKKLKRTYSQF 325
           ER  ++  LI       EK+ LK  + ++      K++  + + +K + +   K + S +
Sbjct: 283 ERFTESRALIEYGFNNFEKQKLKIDKNNKISVVKGKEDYVTVAPEKEVTVVTTKGSKSSY 342

Query: 326 K 326
           K
Sbjct: 343 K 343


>gi|229176064|ref|ZP_04303558.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
 gi|228607408|gb|EEK64736.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
          Length = 423

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 59/297 (19%), Positives = 129/297 (43%), Gaps = 28/297 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 43  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 103 VPFEKGRQYTVRELYYSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  +L   +   +P+  +    R   + +  
Sbjct: 163 NATGLNNADLKGKHPEGTDPNGENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 222

Query: 222 ---RIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 223 PKPIRMENWNWMLPGAAFSYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
           ER  ++ ELI         +  +  + + +S    K+  +    ++  +   K  +K
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTISVVKGKEDQVTVVPEKEITVIAKKGSK 339


>gi|317132149|ref|YP_004091463.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ethanoligenens
           harbinense YUAN-3]
 gi|315470128|gb|ADU26732.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ethanoligenens
           harbinense YUAN-3]
          Length = 443

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 119/266 (44%), Gaps = 28/266 (10%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSI------VIDVNKNQMTGFKQ-DEPRYPASLT 81
            +M  +LFL++ +   +  + A    +S+      +++ +   +   K  D   YPAS+T
Sbjct: 4   TIMTVVLFLAVAVGISSLPVLAWDPPASVSSSTVYLVNADTGAVIYEKNADAKVYPASIT 63

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALIT 137
           K+MT  +  +   +    ++T + V+K         + S L LK     T  Q +  L+ 
Sbjct: 64  KLMTALLTMQKYSNA---MDTVLTVTKDDIAPLSGTDSSVLGLKPGEQITVRQLLYGLLV 120

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND +      + GS   F  +M+ +AKKIG  +T Y N  GL D N  TTA+D  ++
Sbjct: 121 KSGNDCAMVLARNVGGSVSAFVDMMNAEAKKIGADHTHYANPEGLQDPNHYTTAKDVYLI 180

Query: 198 GILLRKN-------FPQYYKYFSIRKFRYRNRIITNHNKLLNK-----MHNIDGIKTGYT 245
              +  N         Q Y   +          ITN N LL+      + ++ GIKTG T
Sbjct: 181 ARQVMANDFLAGVVDTQSYTIPATNMTTA--VKITNTNLLLSSGSKYYLSSVKGIKTGTT 238

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMP 271
            ++G  +V+  + K     AVVMG  
Sbjct: 239 TDAGACLVSMAQSKGMTYYAVVMGGK 264


>gi|291563035|emb|CBL41851.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
           SS3/4]
          Length = 459

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 76/258 (29%), Positives = 122/258 (47%), Gaps = 26/258 (10%)

Query: 51  KPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
           KP  S+   I+ DV   ++   K  DE   PAS TK+MT  ++ E     K +L+ ++  
Sbjct: 92  KPTISAEAGILYDVTNGRVLFEKNADEKLAPASTTKLMTALLVLE-----KANLDDKVTF 146

Query: 107 SKTAAT---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           SKTA T       K+ L E    + +  + AL+ +SAN+V+    E +SGS   FA LM+
Sbjct: 147 SKTAVTNLESGAVKIGLVEGDQVSVKDSLYALLLKSANEVANGLAEHVSGSISAFAELMN 206

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR--- 220
            +A ++G  NT + N +GL+   Q TT RD A +      N     +  S   +++    
Sbjct: 207 ARAAELGCTNTHFVNPNGLNSDQQYTTCRDMAKIAAAAFAN-KTLCEIDSTLSYKFPATK 265

Query: 221 ---NRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
               R IT  +K+L          I G KTGYT  +G  +VT +      +VAV++   +
Sbjct: 266 AAAARTITPGHKMLYPNDSRYYAGIVGGKTGYTSKAGNTLVTCVEKNGVRMVAVILKSKS 325

Query: 273 SQERDQKALELITSFLEK 290
           +   D K  +++    + 
Sbjct: 326 THYEDTK--KMLDYGYQY 341


>gi|225574472|ref|ZP_03783082.1| hypothetical protein RUMHYD_02547 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038322|gb|EEG48568.1| hypothetical protein RUMHYD_02547 [Blautia hydrogenotrophica DSM
           10507]
          Length = 396

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 65/276 (23%), Positives = 125/276 (45%), Gaps = 24/276 (8%)

Query: 33  KILFLSIIMISMA--SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
            +L  +I   S+A   +       + ++++     +   K  D+  YPAS TK+MT  ++
Sbjct: 12  SVLAAAITTNSIAGWPQGPEIVDETGVLMEAETGTILYDKGMDQRMYPASTTKIMTALVV 71

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            E  +     L T+I  ++T   +   + + +  +     T EQ + A +  SAN+VS+ 
Sbjct: 72  LENTED----LQTKITFTETGTKEVTPDSANIQAQLGEELTVEQCLYASLLASANEVSSQ 127

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             EF+ G+++ F  +M+ KA+++G  +T + N +GL D+N  TTA D A++     +N  
Sbjct: 128 LAEFVGGTKEHFVEMMNLKAQELGCSDTHFTNPNGLPDENHYTTAHDLALIMQAAIQN-E 186

Query: 207 QYYKYFSIRKFRYR-------NRIITNHNKLL-----NKMHNIDGIKTGYTRNSGFNIVT 254
            + +  S + +           R +TNH+ +L     +        KTG+T  +   +VT
Sbjct: 187 TFREIESTQTYTIPATNKTATPRNLTNHHAMLVSGNPSYYEGAFAGKTGHTDAAKDTLVT 246

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +       ++ VV+     Q      + L     E+
Sbjct: 247 AAEKNGMTLICVVLKSDNGQV-VADTINLFNYGFEQ 281


>gi|223983850|ref|ZP_03634014.1| hypothetical protein HOLDEFILI_01295 [Holdemania filiformis DSM
           12042]
 gi|223964174|gb|EEF68522.1| hypothetical protein HOLDEFILI_01295 [Holdemania filiformis DSM
           12042]
          Length = 412

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 79/323 (24%), Positives = 131/323 (40%), Gaps = 26/323 (8%)

Query: 35  LFLSIIMISMASELHAKPKY-------SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           L    + I+M   L  K +        S+++ID +   +   K  D+  YPAS+TK+MT+
Sbjct: 8   LAALALAINMMPALSIKAEEELNLDGESAVLIDADSGAVLYEKNADDRHYPASITKIMTV 67

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAAT---QNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           Y+        + + +  +  + TA     +  S ++L      + +    A I  SAND 
Sbjct: 68  YLAL-----SQGNPDQMLTATDTAIDNIDRKSSHIWLDYGEELSLKDACYAAIMASANDA 122

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           S    E I GS+++FA LM+  A   G +NT + NA GL D++  TTA D A++  +  K
Sbjct: 123 SNVLAEAIGGSQEEFAGLMNEAAAAAGAKNTHFANAHGLPDEDHYTTAYDMAMITRMAMK 182

Query: 204 N--FPQYYKYFSIRKFRYRN----RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIV 253
           N  F + +                R   + N +L K         G K G+T ++G+ IV
Sbjct: 183 NAAFAEVFGTVKYEMQPTNKQKDVRYFASGNDMLKKGEFFYEYATGGKIGWTEDAGYTIV 242

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSL 313
           T+       ++AVV+       R      L                  +  +    K+  
Sbjct: 243 TTASKDGVNLIAVVLKNSNKNARYTDTRALFDYGFANYKQITIPASSFEEKTIEIKKRGQ 302

Query: 314 MIKKLKRTYSQFKKIDAKAHSTQ 336
           +    K   S   KI AK +  +
Sbjct: 303 LWATAKFKMSYDFKILAKTNDDE 325


>gi|225871200|ref|YP_002747147.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp. equi
           4047]
 gi|225700604|emb|CAW95134.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus equi
           subsp. equi 4047]
          Length = 411

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 70/335 (20%), Positives = 149/335 (44%), Gaps = 31/335 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           +++ I  +  ++ L I   S A       +  +I +++   ++   K+ + + P ASLTK
Sbjct: 1   MKKLIVTLAALMCL-ITNTSFAENFSVNSRQ-AIAVEMTTGKILYAKEAQQKAPIASLTK 58

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRS 139
           ++T+Y++ + +++ +L  ++Q+ +S+ A   AT         E+  +T ++ + + +  S
Sbjct: 59  LLTVYLVLKEIKAGRLQWDSQVTLSEYALQLATDPDISNPAFEQRPYTIKELVESSLIIS 118

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HDK 185
           AN  + A  E I+GSE  F  +M  + +  G+++ +  NASGL               D 
Sbjct: 119 ANSSAVALAEHIAGSEPTFVDMMKKQLEAWGIRDYLLVNASGLNNSMLKGHLYPGSQPDD 178

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIK 241
               TARD A++   L ++FP+     S  + ++  + + + N LL         +DG+K
Sbjct: 179 ENQMTARDLALIAQQLIQDFPELLTISSQPQLKWGEKALPSSNLLLAGREMGRAGVDGLK 238

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTLKH-- 295
           TG T  +G  ++ +    +  +++V++         + R  +   L+        L+   
Sbjct: 239 TGTTSQAGQTMIATAVQDNMRVISVILHADQSDTDERARFVETNRLLDYCFNSYALEKLV 298

Query: 296 -QQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKID 329
            Q     + L      K  +  K  +T +  +  D
Sbjct: 299 AQNQVLPERLIVKQAAKQRLRVKASQTLTVVRPKD 333


>gi|111657944|ref|ZP_01408652.1| hypothetical protein SpneT_02000863 [Streptococcus pneumoniae
           TIGR4]
 gi|149007183|ref|ZP_01830847.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP18-BS74]
 gi|147761221|gb|EDK68188.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           SP18-BS74]
          Length = 406

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 72/336 (21%), Positives = 140/336 (41%), Gaps = 33/336 (9%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYII 89
           M  +  L     ++A +     K+ +I ++ N  ++   K   +P   AS+TK++T+Y++
Sbjct: 1   MLTVSLLGGASTAVAQDFTIAAKH-AIAVEANTGKILYEKDATQPVEIASITKLITVYLV 59

Query: 90  FEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           +E L++  + L+T + +S            S + ++ + Y T E+ + A +  SAN  + 
Sbjct: 60  YEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVSSANSAAI 118

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTA 191
           A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D+    +A
Sbjct: 119 ALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSA 178

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIKTGYTRN 247
            D AI+   L K +PQ  +        +    IT+ N +L  M       DG+KTG T  
Sbjct: 179 YDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDK 238

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKTLKHQQTH 299
           +G + V +   K   ++ VV+           R      L+      F  +K ++    +
Sbjct: 239 AGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQQGDAY 298

Query: 300 RKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           +         K+  +           +++  ++  +
Sbjct: 299 QDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQS 334


>gi|238925625|ref|YP_002939142.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium rectale ATCC
           33656]
 gi|238877301|gb|ACR77008.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium rectale ATCC
           33656]
          Length = 526

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 120/293 (40%), Gaps = 32/293 (10%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ- 113
           ++V++VN   +   K   E  YPAS+TK++T Y+           ++ ++  SK A  + 
Sbjct: 98  AVVMEVNTGTVLYEKNSHEKHYPASITKILTTYLTI-----LNCKMDEKVTFSKEAVKES 152

Query: 114 --NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF----ISGSEKKFAILMSNKAK 167
               S +        T EQ +  ++  SAN+ + A  E     + G    F  LM+ +AK
Sbjct: 153 SDGSSSIKRDVGEEMTMEQTLYGVMLESANECAYAAAEHTGKKLGGDYSTFIDLMNKEAK 212

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-------RYR 220
           ++G  +T + NA+GL D+N  T+A D  ++     +N  ++ K    + +          
Sbjct: 213 ELGCTDTHFNNANGLPDENHWTSAYDMGLISCAAYRN-DEFRKITGTKTYIIPPTNKHTE 271

Query: 221 NRIITNHNKLLNK--------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           +  + NH+ +L+          H+  G KTGYT  +   +VT        +  V+M   +
Sbjct: 272 DTPLYNHHAMLHPFKSYSQFVNHDCTGGKTGYTSVANSTLVTYAEKDGLTLCVVIMNAQS 331

Query: 273 SQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQF 325
             +       L+  +      K       +N ++      L +      Y++ 
Sbjct: 332 PDQ-YADTNTLLNYYFSN--FKALSIAENENSAAADNTPDLGVMNEHGMYAKV 381


>gi|332076153|gb|EGI86619.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
           GA41301]
          Length = 406

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 72/336 (21%), Positives = 140/336 (41%), Gaps = 33/336 (9%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYII 89
           M  +  L     ++A +     K+ +I ++ N  ++   K   +P   AS+TK++T+Y++
Sbjct: 1   MLTVSLLGGASTAVAQDFTIAAKH-AIAVEANTGKILYEKDATQPVEIASITKLITVYLV 59

Query: 90  FEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           +E L++  + L+T + +S            S + ++ + Y T E+ + A +  SAN  + 
Sbjct: 60  YEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVSSANSAAI 118

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTA 191
           A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D+    +A
Sbjct: 119 ALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSA 178

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIKTGYTRN 247
            D AI+   L K +PQ  +        +    IT+ N +L  M       DG+KTG T  
Sbjct: 179 YDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDK 238

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKTLKHQQTH 299
           +G + V +   K   ++ VV+           R      L+      F  +K ++    +
Sbjct: 239 AGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQQGDAY 298

Query: 300 RKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           +         K+  +           +++  ++  +
Sbjct: 299 QDSKTPVQDGKEDTVTAVAPEDIYLIERVGNQSSQS 334


>gi|303230440|ref|ZP_07317201.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514979|gb|EFL56960.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 279

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 66/274 (24%), Positives = 121/274 (44%), Gaps = 16/274 (5%)

Query: 25  QRNIQLMGKI--LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLT 81
           QR I  +  I  + L  ++   A    +    + ++ID +  ++   K  +   +PAS T
Sbjct: 8   QRFILALAFIGAMLLGTVVHGAAPTPPSTIGEAVVLIDADNKEILFAKNPDKWMHPASTT 67

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           KM+TL    E    K   L+    +S  A +   S L ++     T E  +  ++  S N
Sbjct: 68  KMVTLLTALEL---KGTQLDELATISPYATSMEESNLGVQVGDQITLEGVLEGMMVASGN 124

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D +    E +SGS + FA  M+  A K G +N+++ N  GL      +TARD A++    
Sbjct: 125 DAAVVVAENVSGSVENFAKDMNRIAAKAGAKNSVFLNPHGLTQMGHHSTARDLALIAAYG 184

Query: 202 RKNFPQYYKYFSIRKFR--YRNR---IITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTS 255
            K +  +    +   ++  Y+NR    I   N  + NK    +G+KTG+T  +G  ++ S
Sbjct: 185 MK-YQMFRDKVANDYYKVPYQNRAPETIRTTNHFIRNKYPGANGLKTGFTNAAGECLIAS 243

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
                  ++ V++       R  +A++ +    +
Sbjct: 244 ATRNGHTMIVVML---NDDNRWNEAVQFLDYGFK 274


>gi|268319018|ref|YP_003292674.1| hypothetical protein FI9785_527 [Lactobacillus johnsonii FI9785]
 gi|262397393|emb|CAX66407.1| dacA [Lactobacillus johnsonii FI9785]
          Length = 308

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 113/257 (43%), Gaps = 22/257 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++ I+         K        AS+TK++T+Y+  + ++ KK+  +T +  ++     
Sbjct: 52  AAVAINAKDGSTIYAKNANQSLPIASMTKLLTVYLTLQAIKEKKISWDTTVTPTQEIVDL 111

Query: 114 NP----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 + + L+    +T  +   A + +SAN+ +      +SGSE  F   MS +A+K 
Sbjct: 112 GSNPDYASVPLRLGQKYTVRELYYAALIKSANNAARLLAIAVSGSETNFLNQMSQQARKW 171

Query: 170 GMQNTIYKNASGLHDK-----------NQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
            + N  +    GL DK               +A D AI+   L  N+P+      + +  
Sbjct: 172 KLNNAKFVTVDGLPDKKKNFLGMTTTVENKMSANDMAIIARKLITNYPEILNTTKLARAY 231

Query: 219 YRNRIITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           ++N ++ N+NK+LN +        +DG+KTG T  +G     ++      ++ V++G   
Sbjct: 232 FQNTLMINNNKMLNGLSYYDSIFPVDGLKTGTTDGAGSCFTCTVNKNGKRVITVILGAEN 291

Query: 273 SQERDQKALELITSFLE 289
             ER  +  +L++    
Sbjct: 292 DNERFVETKKLLSYCFN 308


>gi|167748674|ref|ZP_02420801.1| hypothetical protein ANACAC_03448 [Anaerostipes caccae DSM 14662]
 gi|167651988|gb|EDR96117.1| hypothetical protein ANACAC_03448 [Anaerostipes caccae DSM 14662]
          Length = 374

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 65/301 (21%), Positives = 130/301 (43%), Gaps = 38/301 (12%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS-----------------IVIDVNKNQM 66
           +++ ++ +  +L  ++++ +      A  +  +                 I++D    ++
Sbjct: 1   MKKFVKRLLVMLTAAVLVTAGTVPAKAAERGLATKEDTNADKPSINGVCGILMDAKTGKI 60

Query: 67  TGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKE 122
              K  D+  YPAS+TK++T  +  E        L + +  S+ A        + + +K 
Sbjct: 61  LYAKNIDKKSYPASITKILTTLVAIEN----NDDLYSTVKFSRHAVNSIEPGSTHIGIKA 116

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
                    +  ++  SAN+      E  SGS +KFA LM+ KAK+IG + + + N +GL
Sbjct: 117 GEEIPLMDVLYGIMLESANEACNGVAEHTSGSIEKFADLMNKKAKEIGCKGSHFMNPNGL 176

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKY-------FSIRKFRYRNRIITNHNKLLNK-- 233
           H+     TARD A++     +N P + K         S      + R + NH+K++ +  
Sbjct: 177 HNDKHYVTARDMALITKAALQN-PMFRKIACSSHYFMSGTNKEKKGRELWNHHKMVKQTM 235

Query: 234 --MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
                ++G KTGYT  +G  +VT  +  D  +++V++      E  +  ++L     +  
Sbjct: 236 FLYKGVEGGKTGYTTRAGGTLVTFAKRGDTELISVILRG-NGYELYRDTIKLFDYGFKNY 294

Query: 292 T 292
            
Sbjct: 295 K 295


>gi|295108761|emb|CBL22714.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162]
          Length = 412

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 83/278 (29%), Positives = 136/278 (48%), Gaps = 24/278 (8%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I++D+    +   K  D+ +YPAS+TK+MT  +  E      L L+ +  ++++AA  
Sbjct: 73  SAILVDMLSGTILYSKNADKAQYPASITKIMTGLLGCE-----NLDLSAKFTMTESAARS 127

Query: 114 ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
               N S +Y      FT EQ ++A++ +SAN+++ A  E  SGS KKF   M+ KA+++
Sbjct: 128 ITESNSSSIYADTGEEFTVEQALMAVMLQSANEMTLAVAELTSGSTKKFVEQMNLKARQL 187

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF-------PQYYKYFSIRKFRYRNR 222
           G  NT + N +GL D+   TTA D A +      NF         YY+     KF    R
Sbjct: 188 GCTNTHFNNPNGLPDETHYTTAADMAKIARAAWFNFTFRKFVTTGYYEIPPTNKF-AETR 246

Query: 223 IITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
            + NH+K+++        + G KTGYT  +G  +VT  +  +  +VAVVM        D 
Sbjct: 247 YLLNHHKMMSGQTYAYDGVLGGKTGYTEAAGNTLVTYAKNDNTYLVAVVMQSVNGAYSDT 306

Query: 279 KALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIK 316
           KA  L+       +    +  +K+   S    +  ++K
Sbjct: 307 KA--LLDYGFNNFSRSKIKGLKKEISRSCLPAEKYLLK 342


>gi|253579895|ref|ZP_04857163.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848894|gb|EES76856.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 459

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 128/311 (41%), Gaps = 48/311 (15%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASELHAKPKYS-------------------------SI 57
           Y+ + +  +G ++ ++ + I  A+E  A+   S                          +
Sbjct: 32  YLLKVVMAVG-VIAMTAVQICTAAEGTAQAAVSEVTPVSISTNEISGWPAGPEITSETGV 90

Query: 58  VIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT---AATQ 113
           ++D +   +   K  DE RYPAS+TK+MTL +  E        L   +  ++T     + 
Sbjct: 91  LMDADSGTLLYSKGGDEIRYPASITKIMTLLLAVE-----NCSLKEDVVFTETGTRDISW 145

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           +   + ++     +    + AL+ RSAN+V+    E + G+E+ F  +M+ +A +IG  N
Sbjct: 146 DSGNIGMQVGEVMSMRACLYALVIRSANEVAAQIAEHVGGTEQHFVDMMNERAAQIGCTN 205

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-------NRIITN 226
           T + NASGL D +  +TA D A++     KN  ++ +      +  +        R++  
Sbjct: 206 THFVNASGLPDPDHYSTAHDMALIMREGLKN-KKFRRIIGATDYTIKPTNMNSEPRVLHT 264

Query: 227 HNKLL-----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           H+ +L            G KTGYT  +G  +VT+        + V M           + 
Sbjct: 265 HHPMLAPESSYHYDGCIGGKTGYTSEAGNTLVTAAGKNGTTYITVTMKAADLAVASTDST 324

Query: 282 ELITSFLEKKT 292
            L     +  T
Sbjct: 325 ALFNYGYQNFT 335


>gi|228968521|ref|ZP_04129509.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791227|gb|EEM38841.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 423

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 59/299 (19%), Positives = 131/299 (43%), Gaps = 28/299 (9%)

Query: 62  NKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPS 116
           +  ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S
Sbjct: 42  DTGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFS 101

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
            +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   +
Sbjct: 102 NVPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKF 161

Query: 177 KNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN- 221
            N++GL++ +                 +ARD  IL   +   +P+  +    R   + + 
Sbjct: 162 VNSTGLNNADLKGKHPEGTDPTGENSMSARDMGILAKTIITKYPEMLEDTKQRFRNFPDN 221

Query: 222 ----RIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                 + N N +L          DG+KTG +  +G+    + +  D  +++V++   + 
Sbjct: 222 HPKPIRMENWNWMLPGAAFSYDGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSM 281

Query: 274 QERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
            ER  ++ ELI         +  + ++ + +S    K+  +    ++  +   K  +K 
Sbjct: 282 DERFTESRELIEHGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKE 340


>gi|218900516|ref|YP_002448927.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           G9842]
 gi|218541526|gb|ACK93920.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           G9842]
          Length = 423

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 59/299 (19%), Positives = 131/299 (43%), Gaps = 28/299 (9%)

Query: 62  NKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPS 116
           +  ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S
Sbjct: 42  DTGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFS 101

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
            +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   +
Sbjct: 102 NVPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKF 161

Query: 177 KNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN- 221
            N++GL++ +                 +ARD  IL   +   +P+  +    R   + + 
Sbjct: 162 VNSTGLNNADLKGKHPEGTDPTGENSMSARDMGILAKTIITKYPEMLEDTKQRFRNFPDN 221

Query: 222 ----RIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                 + N N +L          DG+KTG +  +G+    + +  D  +++V++   + 
Sbjct: 222 HPKPIRMENWNWMLPGAAFSYDGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSM 281

Query: 274 QERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
            ER  ++ ELI         +  + ++ + +S    K+  +    ++  +   K  +K 
Sbjct: 282 DERFTESRELIEHGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKE 340


>gi|289167763|ref|YP_003446032.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 3
           [Streptococcus mitis B6]
 gi|288907330|emb|CBJ22167.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 3
           [Streptococcus mitis B6]
          Length = 413

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/325 (22%), Positives = 141/325 (43%), Gaps = 33/325 (10%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHL 100
              A + +   K+ +I ++ N  ++   K+  +P   AS+TK++T+Y+++E L++  + L
Sbjct: 19  TVAAQDFNITAKH-AIAVEANTGKILYEKEATQPVEIASITKLLTVYLVYEALENGSITL 77

Query: 101 NTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           +T + +S            S + ++ + Y T EQ + A +  SAN  + A  E I+GSEK
Sbjct: 78  STPVDISDYPYKLTTNSEASNVPMEARNY-TVEQLLEATLVSSANSAAIALAEKIAGSEK 136

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAILGILLR 202
            F  +M  K  + G+Q+    N +GL+              D     +A D AI+   L 
Sbjct: 137 DFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDDENKLSAYDVAIVARNLI 196

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIKTGYTRNSGFNIVTSLRY 258
           K +PQ  +        +    IT+ N +L  M       DG+KTG T  +G + V +   
Sbjct: 197 KKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVE 256

Query: 259 KDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKTLKHQQTHRKDNLSSTSLK 310
           K   ++ VV+           R      L+      F  +K ++    ++         K
Sbjct: 257 KGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQKGDAYQDSKAPVQDGK 316

Query: 311 KSLMIKKLKRTYSQFKKIDAKAHST 335
           ++++    K   S  +++ +++  +
Sbjct: 317 ENMVTAVAKDDISLIERVGSQSSQS 341


>gi|25010218|ref|NP_734613.1| hypothetical protein gbs0143 [Streptococcus agalactiae NEM316]
 gi|23094570|emb|CAD45788.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 411

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 79/336 (23%), Positives = 144/336 (42%), Gaps = 36/336 (10%)

Query: 29  QLMGKILFLSIIMISM---ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMM 84
           +++  IL LS I       A   +A  KY ++ +D++  ++   K    P   ASLTK+M
Sbjct: 3   KIITSILLLSCIFFMPTISAESFNASAKY-ALAVDLDSGKILYEKDANRPAAIASLTKIM 61

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGILALITRSA 140
           T+Y++++ + +  L  NT++ +S          + S + L+++  +T +Q + A +  SA
Sbjct: 62  TVYMVYKEIDNGNLKWNTKVNISDYPYQLTRESDASNVPLEKR-RYTVKQLVDAAMISSA 120

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD--------------KN 186
           N  + A  E ISG+E KF   M+ + +K G+ ++   NASGL++                
Sbjct: 121 NSAAIALAEHISGTESKFVDKMTAQLEKWGIHDSHLVNASGLNNSMLGNHIYPKSSQNDE 180

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIKT 242
              +ARD AI+   L   +P   K  S    ++   I+ ++N +L  M      I G+KT
Sbjct: 181 NKMSARDIAIVAYHLVNEYPSILKITSKSVAKFDKDIMHSYNYMLPDMPVFRPGITGLKT 240

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGM----PTSQERDQKALELITSFLEKK----TLK 294
           G T  +G + + +       ++ V+M           R      L+            L 
Sbjct: 241 GTTELAGQSFIATSTESGMRLLTVIMHADKADKDKYARFTATNSLLNYITNTYEPNLVLA 300

Query: 295 HQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
              T++    S    K+  +I   K      +K + 
Sbjct: 301 KGATYKGKEASVRDGKEQSVIAVAKNDLKVAQKKNI 336


>gi|296269600|ref|YP_003652232.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thermobispora
           bispora DSM 43833]
 gi|296092387|gb|ADG88339.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thermobispora
           bispora DSM 43833]
          Length = 307

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 63/262 (24%), Positives = 108/262 (41%), Gaps = 20/262 (7%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLN 101
           + A  +      ++ ++D    +    K    R P ASLTK+MT Y++    +     L 
Sbjct: 49  TAAHSVPEVYARAAYLLDAATGEELYGKAGTERMPVASLTKVMTAYLVLRQAK-----LT 103

Query: 102 TQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
             + +     + A     +   L+     T E  + AL+  S  D + A         + 
Sbjct: 104 DTVVIDPADVRYANAGGGTTAGLRAGDRLTVEDLLYALMLPSGADAAHALARVYGPGVEA 163

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKN--QITTARDQAILGILLRKNFPQYYKYFSI- 214
           F   M++ A+++G+ +T Y NA GL        +TARDQA L  +  ++ P+  K  S  
Sbjct: 164 FTKRMNDTARELGLTDTTYLNADGLPTPEGQNTSTARDQARLAEIALRD-PRLKKITSTQ 222

Query: 215 -----RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
                R   +      N N+LL     + G+KTG+T  +GF +  +       +V V++G
Sbjct: 223 VHTVARTADHAAYTWRNTNRLLGA-PGVIGVKTGFTLAAGFCLAFAAERDGRLVVGVILG 281

Query: 270 MPTSQERDQKALELITSFLEKK 291
              S  R   A  L+    E+ 
Sbjct: 282 ETVSARRYTTARALLDWAAERA 303


>gi|300214001|gb|ADJ78417.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           salivarius CECT 5713]
          Length = 385

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 61/264 (23%), Positives = 114/264 (43%), Gaps = 25/264 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I +D    Q+   K D+  YP AS++K++T YI+ + +   ++   T++  + T  
Sbjct: 8   AKSAIAVDAKTGQIIYAKDDKQTYPVASMSKLLTAYILLQAIHKGEVTWETKVTPTATEV 67

Query: 112 T----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                   + + L+E   +T  Q   A++  SAN  +   G  ISG++ KF   M   AK
Sbjct: 68  DISNNTELTNVPLQEGHSYTIRQLYQAMLVGSANAATMLIGNAISGTQTKFIDKMRETAK 127

Query: 168 KIGMQNTIYKNASGLHDK--------------NQITTARDQAILGILLRKNFPQYYKYFS 213
            +G+ +    +A+GL  K                  + RD AI+   L + +P+  +   
Sbjct: 128 SLGITDAKIYSANGLTAKYLGDEIYPNTDENAENEFSVRDMAIISQKLIEEYPEILETTK 187

Query: 214 IRKFRYRN----RIITNHNKLLNKMHN--IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           + K  + +      + N N+LL    N  +DG+KTG +  +G+   ++       I+ V+
Sbjct: 188 LTKIDFNDNGEITTVNNTNELLQDDSNLEVDGLKTGTSDAAGYCFASTTNKDGHRIITVI 247

Query: 268 MGMPTSQERDQKALELITSFLEKK 291
            G   +  R  +   L+       
Sbjct: 248 AGAKDNDARFDQTKNLLNYIYNNY 271


>gi|229173210|ref|ZP_04300759.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
 gi|228610294|gb|EEK67567.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
          Length = 338

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 135/290 (46%), Gaps = 26/290 (8%)

Query: 34  ILFLSIIMISM----------ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
           ILFLS ++ ++             + AK   S+I+ID N  ++   K +E P   A+L+K
Sbjct: 9   ILFLSFVITALIVLYFYLYVNGPIIQAK---SAILIDANSGEVVYKKNEETPIQSATLSK 65

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT YI  E L   K+ L+  + +S        S + +  K   T    + AL     N 
Sbjct: 66  LMTEYITLEQLNEGKIQLDELVKISNEVFRAETSPIQVTSKDKTTVRDLLHALFLTGNNR 125

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDKNQI---TTARDQAILG 198
            + A  E I+G+E  F +LM+ KAK++ +   + + NA+G+++       TTA D A L 
Sbjct: 126 SALALAEHIAGNEDNFTLLMNEKAKQLKLSQPSPFLNATGMNNDTNKQSTTTAIDVAKLA 185

Query: 199 ILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGYTRNSGF 250
             L K+FP       +    F +++  + N NK++       K+  +DG++T ++ N  +
Sbjct: 186 TQLVKDFPDVLNITELTSYQFTFKDSKVFNTNKMIYSLNKNIKLQGVDGLQTSFSTNGNY 245

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + V++ +  D  +++V++          +  +L+    +  +    Q  +
Sbjct: 246 SFVSTAKRGDTRLISVILDSNEENSTFIETKKLLQYGFDPSSYSALQAFK 295


>gi|228936676|ref|ZP_04099469.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823015|gb|EEM68854.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 423

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 128/298 (42%), Gaps = 28/298 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 43  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S    E ++GSEK F  L +  AKK+G++   + 
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSITLAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  IL   +   +P+  +    R   + +  
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
           ER  ++ ELI         +  +  + + LS    K+  +    ++  +   K  +K 
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVAQGKEDQVTVAPEKEITVIAKKGSKN 340


>gi|218231994|ref|YP_002370166.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           B4264]
 gi|218159951|gb|ACK59943.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           B4264]
          Length = 423

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 59/298 (19%), Positives = 131/298 (43%), Gaps = 28/298 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 43  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T ++   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  +L   +   +P+  +    R   + +  
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 222

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
           ER  ++ ELI         +  + ++ + +S    K+  +    ++  +   K  +K 
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKE 340


>gi|317128665|ref|YP_004094947.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473613|gb|ADU30216.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
           cellulosilyticus DSM 2522]
          Length = 390

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 79/316 (25%), Positives = 142/316 (44%), Gaps = 28/316 (8%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKY------SSIVIDVNKNQMTGFKQD-E 73
           ++   ++  L   +LF  I      + + A+ K       ++I+ID +  ++   K   E
Sbjct: 4   TMCFSKHSFLKLFLLFAIIFSYIDNTSVFAEKKIPEITSEAAILIDSHTEEILFDKNMME 63

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           P YPAS+TK++T  I  E        LN  + VS  A     +++YL E    T EQ + 
Sbjct: 64  PMYPASITKIVTAIIAIETQD-----LNDIVTVSSDAVRAIGTRVYLLEDEEITLEQLLQ 118

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAK-KIGMQN-TIYKNASGLHDKNQITTA 191
            L+  S ND + A  E I GS + F+  M++  + ++G+ + T + N  GL +++ +TTA
Sbjct: 119 GLMVSSGNDAAIAIAEHIDGSVEAFSDRMNDFVRTEVGVSDITNFTNPHGLFEEDHVTTA 178

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKMHNIDGIKTGYTRN 247
            D A +     KN   + +        +       II NH+ L      + GIK G+ R 
Sbjct: 179 YDMAKISAYAMKN-ETFRELVGTHSVEWVGEGWETIIYNHHPLTRSYDEVIGIKNGFVRM 237

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL---EKKTLKH------QQT 298
           SG+ + T+   +   +++V +  P+     +  L L+       E + L        ++ 
Sbjct: 238 SGYTLSTAAIDEHIELISVTLNSPSRNFAQKDTLTLLDYGFSHYETQVLTFEDEPLLKEY 297

Query: 299 HRKDNLSSTSLKKSLM 314
              D+++ TSLK   +
Sbjct: 298 IYPDSVAVTSLKGEEI 313


>gi|229170094|ref|ZP_04297784.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
 gi|228613378|gb|EEK70513.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
          Length = 425

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 63/301 (20%), Positives = 134/301 (44%), Gaps = 37/301 (12%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 45  TGKILHEQNPDELLAIASMSKLIVIYAVLEAIKEGKITWDTKVTISDYAYEVSRNNEFSN 104

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 105 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 164

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  IL   +   +P+  +    R   + +  
Sbjct: 165 NATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKTIITKYPEMLEDTKQRFRNFPDNH 224

Query: 222 ---RIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 225 PKPIRMENWNWMLPGAAFSYEGADGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 284

Query: 275 ERDQKALELITSF---LEKKTLKHQQTHR------KDNLSSTSLKKSLMIKKLKRTYSQF 325
           ER  ++  LI       EK+ LK  + ++      K++  + + +K + +   K   + +
Sbjct: 285 ERFTESRALIEYGFNNFEKQKLKVDKNNKISVVKGKEDYVTVAPEKEVTVVTAKGNKAPY 344

Query: 326 K 326
           K
Sbjct: 345 K 345


>gi|71910630|ref|YP_282180.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS5005]
 gi|71853412|gb|AAZ51435.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS5005]
          Length = 442

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 70/321 (21%), Positives = 143/321 (44%), Gaps = 30/321 (9%)

Query: 13  TFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD 72
             +      I I+R + L   +L  S    ++ +         +IV++ +  ++   K  
Sbjct: 22  FVIIVTMKDIMIKRWVILFFMVLTCSGFGKTVLAADFQVGAEHAIVVEADSGRVLYEKDA 81

Query: 73  E-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           + P   ASLTK++T Y++ + ++S +L L+ Q+ +S  A      ++ S +   +K  ++
Sbjct: 82  KTPDAIASLTKLVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPF-DKKTYS 140

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-- 185
            +  + A +  S+N  + A  E ++GSE  F   M  +    G+ +    NASGL ++  
Sbjct: 141 VQDLLTATLVASSNSAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVL 200

Query: 186 ------------NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                         + +A+D AI+ + L ++FP+  +     +  +    I + N+LL  
Sbjct: 201 KDHRYPGSALEEENMLSAQDVAIVTMHLLEDFPEILEITKQTEVDFAGNSIKSFNQLLPG 260

Query: 234 MH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS----QERDQKALELIT 285
           M      +DG+KTG T  +G  +V +       ++ V++    S      R ++A  L+ 
Sbjct: 261 MAKGRAGVDGLKTGTTDLAGHCLVVTSIENGMRLITVILNADGSDKNQNTRFEQANRLLD 320

Query: 286 SFLEKKTLKHQQTHRKDNLSS 306
                +T   ++  +K +L S
Sbjct: 321 YVA--RTYCRRKILKKGSLVS 339


>gi|228911227|ref|ZP_04075032.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           200]
 gi|228848403|gb|EEM93252.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           200]
          Length = 423

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 59/298 (19%), Positives = 131/298 (43%), Gaps = 28/298 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 43  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T ++   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           N++GL++ +                 +ARD  IL   +   +P+  +    R   + +  
Sbjct: 163 NSTGLNNADLKGKHPEGTDPTGENSMSARDMGILAKTIITKYPEMLEDTKQRFRNFPDNH 222

Query: 222 ---RIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 223 PKPIRMENWNWMLPGAAFSYDGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
           ER  ++ ELI         +  + ++ + +S    K+  +    ++  +   K  +K 
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKE 340


>gi|194396776|ref|YP_002037508.1| penicillin-binding protein 3, D-alanyl-D-alanine carboxypeptidase
           [Streptococcus pneumoniae G54]
 gi|194356443|gb|ACF54891.1| penicillin-binding protein 3, D-alanyl-D-alanine carboxypeptidase
           [Streptococcus pneumoniae G54]
          Length = 413

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 143/343 (41%), Gaps = 33/343 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTK 82
           +++    +  +  L     ++A +     K+ +I ++ N  ++   K   +P   AS+TK
Sbjct: 1   MKKIFLTLLTVSLLGGASTAVAQDFTIAAKH-AIAVEANTGKILYEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S            S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFARMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKT 292
           KTG T  +G + V +   K   ++ VV+           R      L+      F  +K 
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKI 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           ++    ++         K+  +           +++  ++  +
Sbjct: 299 VQQGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQS 341


>gi|193212918|ref|YP_001998871.1| Serine-type D-ala-D-ala carboxypeptidase [Chlorobaculum parvum NCIB
           8327]
 gi|193086395|gb|ACF11671.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobaculum parvum NCIB
           8327]
          Length = 411

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 69/333 (20%), Positives = 140/333 (42%), Gaps = 26/333 (7%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHA--KPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           S+++   + + G ++ L    ++    +        S +V +   +     K  D+   P
Sbjct: 16  SVFVVTVMLVFGALILLHGNAVAKQKVVPQGEDAVTSFLVKETGSSNFLKAKNIDQRISP 75

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT  +  E  +     L+  + +   A    P++   K          + A + 
Sbjct: 76  ASLTKIMTCMLAIESGR-----LDDVVTIPPEATKVEPTRAGFKPGDRIRLRDLVAAAMV 130

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD---KNQITTARDQ 194
            S+ND + A    + GS   F   M+ +A+ +GM +T + N +G          +TARD 
Sbjct: 131 NSSNDAAFAIAIHLGGSLNGFVSKMNARARALGMTHTRFTNPAGYDRGSYAGNHSTARDL 190

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRN------RIITNHNKLLNKMHNIDGIKTGYTRNS 248
             L     + + ++ K   + +  +          + +HNKLL++     GIKTGYT  +
Sbjct: 191 MKLTEHAIR-YSEFNKIAKLDRVVFNELNTGKRYSLRSHNKLLDRYPYSVGIKTGYTSKA 249

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE-----KKTLKHQQTHRKDN 303
           G  ++     +   ++ +++   T  +R + A  +           ++TL+ ++T + + 
Sbjct: 250 GPCLIARAVCEGKDMLVIMLHAKT--DRWELASSMFDQGFNLETTPRRTLRGKKT-QIEE 306

Query: 304 LSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
           + +T +KKS   KK     S+   +  K  S +
Sbjct: 307 IRATEIKKSQAAKKSSTKSSKTAVVSVKKPSVK 339


>gi|239624021|ref|ZP_04667052.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522052|gb|EEQ61918.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 482

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 124/287 (43%), Gaps = 37/287 (12%)

Query: 35  LFLSIIMISMASEL--HAKPKY---------SSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           + +S+IM+   S +   A+P +         + IV+D++   +   +   E + PAS+TK
Sbjct: 7   IIVSLIMVLTMSSITAFARPDWPTDTGVQSEAGIVMDMDSGAVLFAQNIHEQKIPASITK 66

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T  ++ E        L+ ++  S  A     + + +KL L+E    +  + +  ++ +
Sbjct: 67  LLTALVVIENCDD----LDDKVTFSHDAVYNVESGSGNKLALEEGDVLSVRECLYVMLLQ 122

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S+N  + A  E+I GS   F  +M+ K   +G Q + + N SGL+D  Q T+A D A++ 
Sbjct: 123 SSNQAANALAEYIGGSRSGFVDMMNRKVADLGCQESHFANPSGLNDDTQRTSAYDMALIA 182

Query: 199 ILLRKNFPQYYKYFSIRKFRYR-------NRIITNHNKLL--------NKMHNIDGIKTG 243
               +N  Q  +  S RK            R  +  +KLL            +    KTG
Sbjct: 183 RAAFQN-QQLLEISSTRKASIPATINNPDGRTFSMEHKLLITEDENSVEYYPDAVAGKTG 241

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +T  +G  +VT  R      +AV +   T +        ++     +
Sbjct: 242 WTSQAGQTLVTYARRGGRGEIAVTLRS-TQKTHYSDTKTILDFGFAR 287


>gi|77411808|ref|ZP_00788143.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
           agalactiae CJB111]
 gi|77162143|gb|EAO73119.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
           agalactiae CJB111]
          Length = 411

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 76/335 (22%), Positives = 146/335 (43%), Gaps = 34/335 (10%)

Query: 29  QLMGKILFLSII--MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMT 85
           +++  IL LS I  M ++++E        ++ +D++  ++   K  ++P   ASLTK+MT
Sbjct: 3   KIITSILLLSCIFFMPTISAESFNASAKHALAVDLDSGKILYEKDANKPAAIASLTKIMT 62

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           +Y++++ + +  L  NT++ +S          + S + L+++  +T +Q + A +  SAN
Sbjct: 63  VYMVYKEIDNGNLKWNTKVNISDYPYQLTRESDASNVPLEKR-RYTVKQLVDAAMISSAN 121

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQ 187
             + A  E ISG+E KF   M+ + +K G+ ++   NASGL+              +   
Sbjct: 122 SAAIALAEHISGTESKFVDKMTAQLEKWGIHDSHLVNASGLNNSMLGNHIYPKSSQNDEN 181

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTG 243
             +ARD AI+   L   +P   K  S    ++   I+ ++N +L  M      I G+KTG
Sbjct: 182 KMSARDIAIVAYHLVNEYPSILKITSKSVAKFDKDIMHSYNYMLPDMPVFRPGITGLKTG 241

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGM----PTSQERDQKALELITSFLEKK----TLKH 295
            T  +G + + +       ++ V+M           R      L+            L  
Sbjct: 242 TTELAGQSFIATSTESGMRLLTVIMHADKADKDKYARFTATNSLLNYITNTYEPNLVLAK 301

Query: 296 QQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
              ++    S    K+  +I   K      +K + 
Sbjct: 302 GAAYKGKEASVRDGKEQSVIAVAKNDLKVVQKRNI 336


>gi|38142301|dbj|BAD00953.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|38142327|dbj|BAD00966.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
          Length = 413

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 143/343 (41%), Gaps = 33/343 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTK 82
           +++    +  +  L     ++A +     K+ +I ++ N  ++   K   +P   AS+TK
Sbjct: 1   MKKIFLTLLTVSLLGGASTAVAQDFTIAAKH-AIAVETNTGKILYEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S            S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           SAN  + A  E I+GSEK F  +M  K  + G+Q+    N +GL+              D
Sbjct: 119 SANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
           +    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG+
Sbjct: 179 EENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKT 292
           KTG T  +G + V +   K   ++ VV+           R      L+      F  +K 
Sbjct: 239 KTGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKI 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           ++    ++         K+  +           +++  ++  +
Sbjct: 299 VQQGDAYQDSKTPVQDGKEDTVTAVAPEDIYLIERVGNQSSQS 341


>gi|322374184|ref|ZP_08048717.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C150]
 gi|321276889|gb|EFX53961.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C150]
          Length = 417

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 73/341 (21%), Positives = 141/341 (41%), Gaps = 36/341 (10%)

Query: 30  LMGKILFLSIIMISMASELHAK---PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMT 85
           +M  ++ + ++  ++A E           +I I+    ++   K        AS+TK++T
Sbjct: 10  IMVALILIGLVTPALAQEQTDDFNVAAKHAIAIESTTGKVLYEKDATTPDGVASMTKILT 69

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
            Y++++ +   K+  +T++ +S            S + L  +  +T +Q + A +  SAN
Sbjct: 70  AYMVYKAIDQGKITWDTEVNISDYPFNLTVDSEVSNVPLDSR-KYTVKQLLDATLISSAN 128

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HDKNQ 187
             + A  E ISG+E  F   M  + KK G+ +    NASGL               D   
Sbjct: 129 SAAIALAEKISGTESAFVDTMKAQLKKWGITDAKLYNASGLNNKYLGDNRYPGSKPDDEN 188

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNHNKLL----NKMHNIDGIKT 242
             +A D AI+   L K++PQ        +  +  +  +T HN +L    N    +DG+KT
Sbjct: 189 TMSALDVAIIADHLIKDYPQVLDITKQGEVDFEGDNKLTTHNYMLEGQDNYREGVDGLKT 248

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVM----GMPTSQERDQKALELITSFLEKKTLK---- 294
           G T  +G + V         ++ VVM    G      R     +L+   ++   +     
Sbjct: 249 GTTELAGASFVAHSNENGMSLITVVMNADNGGEDEAARFTATNDLLDYVVQHWKINKLNT 308

Query: 295 HQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
             Q  +K+++         +  KL+   +  +KI+++  + 
Sbjct: 309 KGQIVKKNDIKVADGVSKTVSAKLESDLTVVQKINSQNDTV 349


>gi|315222027|ref|ZP_07863938.1| beta-lactamase [Streptococcus anginosus F0211]
 gi|315188993|gb|EFU22697.1| beta-lactamase [Streptococcus anginosus F0211]
          Length = 413

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 148/344 (43%), Gaps = 34/344 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           +++ I  +   L + +    +A       K+ +I +DV   ++   K  ++P   AS+TK
Sbjct: 1   MKKFIITLVTTLLIFLAPTVLADNFEVGAKH-AIAVDVATGKILYEKDANQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y+++E +   K  L T + +S          + S + L+ +  +T E+ +   +  
Sbjct: 60  LLTAYLVYEAIHQGKFTLQTSVDISDYPYQLTVNPDASNVPLEAR-KYTVEELLETSLIA 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-------------- 184
           SAN  + A  E ++GSEKKF  LM  K ++ G+++    NASGL++              
Sbjct: 119 SANSPAIALAEKVAGSEKKFVDLMKAKLQQWGIKDATIVNASGLNNSVLGEEHIYPGSGK 178

Query: 185 -KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDG 239
                 +A D AI+   L  ++P+  +        +    +T+ N +L  M      +DG
Sbjct: 179 EDENKMSAHDVAIIARRLILDYPEVLEITQKATSNFAGMTLTSSNHMLKNMPAFRAGVDG 238

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM----PTSQERDQKALELITSFLEKKT--- 292
            KTG +   G + V +++ +   ++ V++ +         R       +T   ++ T   
Sbjct: 239 FKTGTSDKGGSSFVGTIQQRGMRLITVLLNVNHADEDENARFTATSRFMTYIYQQFTVQT 298

Query: 293 -LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
            +K  + + K +    + KK  +     +  +  ++ + K  + 
Sbjct: 299 IVKKGEAYNKSSARVINGKKDEVTAVASKKLTIVRRYNHKKPTV 342


>gi|228955638|ref|ZP_04117636.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228804007|gb|EEM50628.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 423

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 59/299 (19%), Positives = 132/299 (44%), Gaps = 28/299 (9%)

Query: 62  NKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPS 116
           +  ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S
Sbjct: 42  DTGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFS 101

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
            +  ++   +T ++   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   +
Sbjct: 102 NVPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKF 161

Query: 177 KNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN- 221
            NA+GL++ +                 +ARD  +L   +   +P+  +    R   + + 
Sbjct: 162 VNATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDN 221

Query: 222 ----RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                 + N N +L          DG+KTG +  +G+    + +  D  +++V++   + 
Sbjct: 222 HPKPIRMENWNWMLPGASFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSM 281

Query: 274 QERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
            ER  ++ ELI         +  + ++ + +S    K+  +    ++  +   K  +K 
Sbjct: 282 DERFTESRELIEYGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKE 340


>gi|22536332|ref|NP_687183.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
           agalactiae 2603V/R]
 gi|76787943|ref|YP_328878.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae A909]
 gi|22533156|gb|AAM99055.1|AE014198_3 D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
           agalactiae 2603V/R]
 gi|76563000|gb|ABA45584.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae A909]
          Length = 411

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 76/335 (22%), Positives = 146/335 (43%), Gaps = 34/335 (10%)

Query: 29  QLMGKILFLSII--MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMT 85
           +++  IL LS I  M ++++E        ++ +D++  ++   K  ++P   ASLTK+MT
Sbjct: 3   KIITSILLLSCIFFMPTISAESFNASAKHALAVDLDSGKILYEKDANKPAAIASLTKIMT 62

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           +Y++++ + +  L  NT++ +S          + S + L+++  +T +Q + A +  SAN
Sbjct: 63  VYMVYKEIDNGNLKWNTKVNISDYPYQLTRESDASNVPLEKR-RYTVKQLVDAAMISSAN 121

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQ 187
             + A  E ISG+E KF   M+ + +K G+ ++   NASGL+              +   
Sbjct: 122 SAAIALAEHISGTESKFVDKMTAQLEKWGIHDSHLVNASGLNNSMLGNHIYPKSSQNDEN 181

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTG 243
             +ARD AI+   L   +P   K  S    ++   I+ ++N +L  M      I G+KTG
Sbjct: 182 KMSARDIAIVAYHLVNEYPSILKITSKSVAKFDKDIMHSYNYMLPDMPVFRPGITGLKTG 241

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGM----PTSQERDQKALELITSFLEKK----TLKH 295
            T  +G + + +       ++ V+M           R      L+            L  
Sbjct: 242 TTELAGQSFIATSTESGMRLLTVIMHADKADKDKYARFTATNSLLNYITNTYEPNLVLAK 301

Query: 296 QQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
              ++    S    K+  +I   K      +K + 
Sbjct: 302 GAAYKGKEASVRDGKEQSVIAVAKNDLKVVQKKNI 336


>gi|228924135|ref|ZP_04087411.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835625|gb|EEM80990.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 423

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 59/298 (19%), Positives = 131/298 (43%), Gaps = 28/298 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 43  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T ++   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  +L   +   +P+  +    R   + +  
Sbjct: 163 NATGLNNADLKGKHPEGTDLNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 222

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
           ER  ++ ELI         +  + ++ + +S    K+  +    ++  +   K  +K 
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKE 340


>gi|228961651|ref|ZP_04123259.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798001|gb|EEM45006.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 423

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 59/297 (19%), Positives = 131/297 (44%), Gaps = 28/297 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 43  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T ++   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  +L   +   +P+  +    R   + +  
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 222

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
           ER  ++ ELI         +  + ++ + +S    K+  +    ++  +   K  +K
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSK 339


>gi|30023419|ref|NP_835050.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
 gi|229130636|ref|ZP_04259592.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
 gi|229147928|ref|ZP_04276269.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
 gi|296505812|ref|YP_003667512.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
 gi|29898980|gb|AAP12251.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
 gi|228635578|gb|EEK92067.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
 gi|228652975|gb|EEL08857.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
 gi|296326864|gb|ADH09792.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
          Length = 423

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 59/299 (19%), Positives = 132/299 (44%), Gaps = 28/299 (9%)

Query: 62  NKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPS 116
           +  ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S
Sbjct: 42  DTGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFS 101

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
            +  ++   +T ++   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   +
Sbjct: 102 NVPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKF 161

Query: 177 KNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN- 221
            NA+GL++ +                 +ARD  +L   +   +P+  +    R   + + 
Sbjct: 162 VNATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDN 221

Query: 222 ----RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                 + N N +L          DG+KTG +  +G+    + +  D  +++V++   + 
Sbjct: 222 HPKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSM 281

Query: 274 QERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
            ER  ++ ELI         +  + ++ + +S    K+  +    ++  +   K  +K 
Sbjct: 282 DERFTESRELIEYGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKE 340


>gi|225867885|ref|YP_002743833.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701161|emb|CAW98054.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus equi
           subsp. zooepidemicus]
          Length = 411

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 72/335 (21%), Positives = 152/335 (45%), Gaps = 31/335 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           +++ I  +  ++ L I   S+A +     +  +I +++   ++   K+ + + P ASLTK
Sbjct: 1   MKKLIVTLAALMCL-ITNTSLAEDFSVNSRQ-AIAVEMTTGKILYAKEAQQKAPIASLTK 58

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRS 139
           ++T+Y++ + +++ +L  ++Q+ +S+ A   AT         E+  +T ++ + + +  S
Sbjct: 59  LLTVYLVLKEIKAGRLQWDSQVILSEYALQLATDPDISNPAFEQRPYTIKELVESSLIIS 118

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HDK 185
           AN  + A  E I+GSE  F  +M  + +  G+++    NASGL               D 
Sbjct: 119 ANSSAVALAEHIAGSEPTFVDMMKKQLEAWGIRDYRLVNASGLNNSMLKGHLYPGSQPDD 178

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIK 241
               TARD A++   L ++FP+     S  + ++  + + + N LL         +DG+K
Sbjct: 179 ENQMTARDLALIAQQLLQDFPEVLTISSQAQLKWGEKALPSSNLLLAGREMGRAGVDGLK 238

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTLKH-- 295
           TG T  +G  ++T+    +  I++V++         + R  +   L+    +   L+   
Sbjct: 239 TGTTSQAGQTMITTAVQDNMRIISVILHADQSDTDERARFVETNRLLDYCFDSYALEKLV 298

Query: 296 -QQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKID 329
            Q     + L      K  +  K  +T +  +  D
Sbjct: 299 AQNQVLPERLIVKQAAKQRLRVKASQTLTVVRPKD 333


>gi|229051059|ref|ZP_04194606.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
 gi|228722270|gb|EEL73668.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
          Length = 434

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 59/298 (19%), Positives = 131/298 (43%), Gaps = 28/298 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 54  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 113

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T ++   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 114 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 173

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  +L   +   +P+  +    R   + +  
Sbjct: 174 NATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 233

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 234 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 293

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
           ER  ++ ELI         +  + ++ + +S    K+  +    ++  +   K  +K 
Sbjct: 294 ERFTESRELIEYGFNNFEKQKLKVNKNNTISVVKGKEDQVTVTPEKEITVIAKKGSKE 351


>gi|229153550|ref|ZP_04281728.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
 gi|228630154|gb|EEK86805.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
          Length = 434

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 59/298 (19%), Positives = 131/298 (43%), Gaps = 28/298 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 54  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 113

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T ++   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 114 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 173

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  +L   +   +P+  +    R   + +  
Sbjct: 174 NATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 233

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 234 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 293

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
           ER  ++ ELI         +  + ++ + +S    K+  +    ++  +   K  +K 
Sbjct: 294 ERFTESRELIEYGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKE 351


>gi|160941724|ref|ZP_02089051.1| hypothetical protein CLOBOL_06620 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435221|gb|EDP12988.1| hypothetical protein CLOBOL_06620 [Clostridium bolteae ATCC
           BAA-613]
          Length = 381

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 70/239 (29%), Positives = 110/239 (46%), Gaps = 22/239 (9%)

Query: 59  IDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---N 114
           +D     +   K  D+  YPAS+TK+MT  ++ E        L+ ++  S TA T     
Sbjct: 1   MDAATGTVLFSKNGDKQFYPASITKLMTALLVAE-----NCSLDDKVTFSATATTNLEAG 55

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
              + +      T  Q + AL+ +SAN+V  A  E ++GS  KFA +M+ KA  +G  NT
Sbjct: 56  AVSINMTAGDVMTVRQCLYALLLKSANEVGNALAEHVAGSNAKFAEMMNAKAAALGCTNT 115

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-------NRIITNH 227
            + N  GL+D N  TT  D A++     +N        S R +             +T  
Sbjct: 116 HFTNPHGLNDSNHYTTPHDMALIARAAFQN-DVVKTVASTRTYTLPATIKNSSGLTVTIG 174

Query: 228 NKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           +K+LN         + G KTGYT  +G  +VT++      ++AV+M   ++   D KAL
Sbjct: 175 HKMLNPNDARYYPGVIGGKTGYTSKAGNTLVTAVEKDGVRLIAVIMKSKSTHYTDTKAL 233


>gi|206970485|ref|ZP_03231438.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           AH1134]
 gi|229072856|ref|ZP_04206055.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
 gi|229082601|ref|ZP_04215064.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
 gi|206735062|gb|EDZ52231.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
           AH1134]
 gi|228701033|gb|EEL53556.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
 gi|228710347|gb|EEL62322.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
          Length = 423

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 59/299 (19%), Positives = 132/299 (44%), Gaps = 28/299 (9%)

Query: 62  NKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPS 116
           +  ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S
Sbjct: 42  DTGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFS 101

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
            +  ++   +T ++   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   +
Sbjct: 102 NVPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKF 161

Query: 177 KNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN- 221
            NA+GL++ +                 +ARD  +L   +   +P+  +    R   + + 
Sbjct: 162 VNATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDN 221

Query: 222 ----RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                 + N N +L          DG+KTG +  +G+    + +  D  +++V++   + 
Sbjct: 222 HPKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSM 281

Query: 274 QERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
            ER  ++ ELI         +  + ++ + +S    K+  +    ++  +   K  +K 
Sbjct: 282 DERFTESRELIEYGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKE 340


>gi|307709107|ref|ZP_07645566.1| penicillin-binding protein 3 [Streptococcus mitis SK564]
 gi|307620053|gb|EFN99170.1| penicillin-binding protein 3 [Streptococcus mitis SK564]
          Length = 413

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 68/311 (21%), Positives = 130/311 (41%), Gaps = 32/311 (10%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           ++A++        +I ++ N  ++   K   +P   AS+TK++T+Y+++E L++  + L+
Sbjct: 19  TVAAQDFNIAAKHAIAVEANTGKILYEKDATQPVEIASITKLLTVYLVYEALENGSITLS 78

Query: 102 TQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           T + +S            S + ++ + Y T E+ + A +  SAN  + A  E I+GSEK 
Sbjct: 79  TPVDISDYPYQLTTNSEASNVPMEARNY-TVEELLEATLVSSANSAAIALAEKIAGSEKN 137

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAILGILLRK 203
           F  +M  K  + G+++    N +GL+              D     +A D AI+   L K
Sbjct: 138 FVDMMRAKLLEWGIKDATVVNTTGLNNETLGDNIYPGSNKDDENKLSAYDVAIVARNLIK 197

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIKTGYTRNSGFNIVTSLRYK 259
            +PQ  +        +    IT+ N +L  M       DG+KTG T  +G + V +   K
Sbjct: 198 KYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEK 257

Query: 260 DDPIVAVVMGMP----TSQERDQKALELITS----FLEKKTLKHQQTHRKDNLSSTSLKK 311
              ++ VV+           R      L+      F  +K ++    ++   +     K+
Sbjct: 258 GMRVITVVLNADHQDNNPYSRFTATSSLMDYISSTFTLRKVVQQGDAYQDSKVPVQDGKE 317

Query: 312 SLMIKKLKRTY 322
             +        
Sbjct: 318 DTVTAVAPEDI 328


>gi|300854527|ref|YP_003779511.1| D-alanyl-D-alanine carboxypeptidase [Clostridium ljungdahlii DSM
           13528]
 gi|300434642|gb|ADK14409.1| D-alanyl-D-alanine carboxypeptidase precursor [Clostridium
           ljungdahlii DSM 13528]
          Length = 413

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 72/320 (22%), Positives = 132/320 (41%), Gaps = 32/320 (10%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQDE-PRYP 77
           +  +    L+  I    +    +A    A P+    ++I +D+  N++   K  +   YP
Sbjct: 1   MKCKNTSLLLTFIFIFCLSFNVLADNSTALPEIYGKAAITVDMQTNEIIYEKNADIKMYP 60

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-----LKEKTYFTTEQGI 132
           AS TK++T  ++ +  +         +  +  A +Q PS L      ++     + E  +
Sbjct: 61  ASTTKLLTAILLEKNKKPG-----DMLTYTADAKSQPPSSLNRDLHAIEVGDTMSAEDVM 115

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             L+  SAND++    E +S     F+  M+ + K + ++NT +   +GLH+ N  TT  
Sbjct: 116 DGLLMYSANDLAYVVAENVSKDAPTFSDKMNEEVKNLNLKNTHFVTPNGLHNPNHYTTPY 175

Query: 193 DQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRN 247
           D +++     K  P+  K       +I+  +     I N NKLL K       KTGYT  
Sbjct: 176 DMSVIARQAFK-IPRIQKAMERPANTIKTTKGLAFPIKNTNKLLGK-DGCIAGKTGYTDP 233

Query: 248 SGFNIVTSLRYKDDPIVAVVMGM---PTSQERDQKALELITSFLEKK--------TLKHQ 296
           +G  +V         +V VVMG    P          ++I     K+        ++  +
Sbjct: 234 AGRCLVAIYNRNGREMVGVVMGSVYDPADSYVFNDMEKIINWSYSKQPVVLNKKDSIIGR 293

Query: 297 QTHRKDNLSSTSLKKSLMIK 316
           +    + +S   +KKSL + 
Sbjct: 294 KEVSYNPISFIGIKKSLEVP 313


>gi|319939695|ref|ZP_08014054.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus anginosus
           1_2_62CV]
 gi|319811284|gb|EFW07590.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus anginosus
           1_2_62CV]
          Length = 415

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 70/346 (20%), Positives = 149/346 (43%), Gaps = 34/346 (9%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASL 80
           + +++ I  +   L + +    +A       K+ +I +DV   ++   K  ++P   AS+
Sbjct: 1   MTMKKFIITLVTTLLIFLAPTVLADNFEVGAKH-AIAVDVATGKILYEKDANQPVEIASI 59

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALI 136
           TK++T Y+++E +   K  L T + +S          + S + L+ +  +T E+ +   +
Sbjct: 60  TKLLTAYLVYEAIHQGKFTLQTSVDISDYPYQLTVNSDASNVPLEAR-KYTVEELLETSL 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------------ 184
             SAN  + A  E ++GSEKKF  LM  K ++ G++ T   NASGL++            
Sbjct: 119 IASANSPAIALAEKVAGSEKKFVDLMKAKLQQWGIKGTTIINASGLNNSVLGEEHIYPSS 178

Query: 185 ---KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NI 237
                   +A D AI+   L  ++P+  +        +    +T+ N +L  M      +
Sbjct: 179 GKEDENKMSAHDVAIIARRLILDYPEVLEITQKATSNFAGMTLTSSNHMLENMPAFRAGV 238

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKT- 292
           DG+KTG +   G + V +++ +   ++ V++ +         R       +T   ++ T 
Sbjct: 239 DGLKTGSSDKGGSSFVGTIQQRGMRLITVLLNVDHADEDENARFTATSRFMTYIYQQFTV 298

Query: 293 ---LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
              +K  + + K +    + +K  +        +  ++ + K  + 
Sbjct: 299 QTLVKKGEAYNKSSARVINGQKDEVTAVASEKLTIVRRYNHKKPTV 344


>gi|229112801|ref|ZP_04242333.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
 gi|228670635|gb|EEL25947.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
          Length = 434

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 59/298 (19%), Positives = 131/298 (43%), Gaps = 28/298 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 54  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 113

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T ++   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 114 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 173

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  +L   +   +P+  +    R   + +  
Sbjct: 174 NATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 233

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 234 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 293

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
           ER  ++ ELI         +  + ++ + +S    K+  +    ++  +   K  +K 
Sbjct: 294 ERFTESRELIEYGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKE 351


>gi|319744055|gb|EFV96432.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus agalactiae
           ATCC 13813]
          Length = 411

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 76/335 (22%), Positives = 147/335 (43%), Gaps = 34/335 (10%)

Query: 29  QLMGKILFLSII--MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMT 85
           +++  IL LS I  M ++++E        ++ +D++  ++   K  ++P   ASLTK+MT
Sbjct: 3   KIITSILLLSCIFFMPTISAESFNASAKHALAVDLDSGKILYEKDANKPAAIASLTKLMT 62

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           +Y++++ + +  L  NT++ +S          + S + L+++  +T +Q + A +  SAN
Sbjct: 63  VYMVYKEIDNGNLKWNTKVNISDYPYQLTRESDASNVPLEKR-RYTVKQLVDAAMISSAN 121

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQ 187
             + A  E ISG+E KF   M+ + +K G+ ++   NASGL+              +   
Sbjct: 122 SAAIALAEHISGTESKFVDKMTAQLEKWGIHDSHLVNASGLNNSMLGNHIYPKSSQNDEN 181

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTG 243
             +ARD AI+   L   +P   K  S    ++   I+ ++N +L  M      I G+KTG
Sbjct: 182 KMSARDIAIVAYHLVNEYPSILKITSKSVAKFDKDIMHSYNYMLPDMPVFRPGITGLKTG 241

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGM----PTSQERDQKALELITSFLEKK----TLKH 295
            T  +G + + +       ++ V+M           R      L+            L  
Sbjct: 242 TTELAGQSFIATSTESGMRLLTVIMHADKADKDKYARFTATNSLLNYITNTYEPNLVLAK 301

Query: 296 QQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
              ++   +S    K+  +I   K      +K + 
Sbjct: 302 GAAYKGKEVSVRDGKEQSVIAVAKNDLKVAQKKNI 336


>gi|229164337|ref|ZP_04292267.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
 gi|228619080|gb|EEK75976.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
          Length = 424

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 131/298 (43%), Gaps = 28/298 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 43  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T ++   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLSLANEHAKKLGLKKYKFV 162

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           N++GL++ +                 +ARD  IL   +   +P+  +    R   + +  
Sbjct: 163 NSTGLNNADLKGKHPEGTDPNGENSMSARDMGILSKTIITKYPEMLEDTKQRFRNFPDNH 222

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 282

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
           ER  ++ ELI         +  +  + + +S    K+  +    ++  +   K  +KA
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKIDKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKA 340


>gi|94990442|ref|YP_598542.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS10270]
 gi|94543950|gb|ABF33998.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS10270]
          Length = 451

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 71/320 (22%), Positives = 146/320 (45%), Gaps = 32/320 (10%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIM-ISMASELHAKPKYSSIVIDVNKNQMTGFKQDE 73
           +      I I+R + L   +L  S      +A++  A  ++ +IV++ +  ++   K  +
Sbjct: 33  IIVTMKDIMIKRWVILFFMVLTCSGFGKTVLAADFQAGAEH-AIVVEADSGRVLYEKDAK 91

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTT 128
            P   ASLTK++T Y++ + ++S +L L+ Q+ +S  A      ++ S +   +K  ++ 
Sbjct: 92  TPDAIASLTKLVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPF-DKKTYSV 150

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK--- 185
           +  + A +  S+N  + A  E ++GSE  F   M  +    G+ +    NASGL ++   
Sbjct: 151 QDLLTATLVASSNSAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLK 210

Query: 186 -----------NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
                          +A+D A++ + L ++FP+  +     +  +    I + N+LL  M
Sbjct: 211 DNRYPGSALEEENTLSAQDVAVVTMHLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGM 270

Query: 235 H----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS----QERDQKALELITS 286
                 +DG+KTG T  +G  +V +       ++ V++    S      R ++A  L+  
Sbjct: 271 AKGRAGVDGLKTGTTDLAGHCLVVTSIENGMRVITVILNADGSDKNQNTRFEQANRLLDY 330

Query: 287 FLEKKTLKHQQTHRKDNLSS 306
               +T   ++  +K +L S
Sbjct: 331 VA--RTYCRRKILKKGSLVS 348


>gi|327440835|dbj|BAK17200.1| D-alanyl-D-alanine carboxypeptidase [Solibacillus silvestris
           StLB046]
          Length = 324

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 138/296 (46%), Gaps = 10/296 (3%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYL 93
           + +  + +S +S++ A    S +VID    +      +  R P ASLTK+ T  ++ E  
Sbjct: 8   IVVMFVFLSGSSQIQA-ASNSYVVIDAENGRTLMGVNEHARLPIASLTKIWTALVVLENS 66

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           +     L  ++ +SK A+    S +YL E   +T +  +  L+ +S ND +TA  E + G
Sbjct: 67  E-----LTDEVVISKEASLVEGSSIYLLENETYTIDYLLHGLMMQSGNDAATALAEHVGG 121

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S + F  LM+ KA+   +  T + N +GLH++  +++A + A +  +   N P++ K  S
Sbjct: 122 SVEGFVQLMNEKAELYQLHETTFTNPTGLHNEAHLSSAYNTAKMLQIAMMN-PEFRKIAS 180

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            + F    R   N ++L+++       KTGYT+ +G  + T    +    V V +     
Sbjct: 181 TQNFS-DGRQWRNKHRLMHEKIGAIAGKTGYTKVAGRTLATFFEREQKSFVVVTINEGND 239

Query: 274 QERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKID 329
               +   + I +  E++T+  +  +  + L+   L +   +   K+    F+ I 
Sbjct: 240 WNIHRNLADFIDNNFEQQTIVKKGKYNANGLA-IELDEPFQMLLHKKERPNFEHIV 294


>gi|229158950|ref|ZP_04287007.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
 gi|228624561|gb|EEK81331.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
          Length = 423

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 61/297 (20%), Positives = 129/297 (43%), Gaps = 28/297 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 43  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 103 VPFEKSRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  IL   +   +P+  +    R   + +  
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
           ER  ++ ELI         +  +  + + LS    K+  +    ++  +   K  +K
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSK 339


>gi|94988566|ref|YP_596667.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS9429]
 gi|94992388|ref|YP_600487.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS2096]
 gi|94542074|gb|ABF32123.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS9429]
 gi|94545896|gb|ABF35943.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS2096]
          Length = 451

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 133/299 (44%), Gaps = 28/299 (9%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE- 73
           +      I I+R + L   +L  S    ++ +         +IV++ +  ++   K  + 
Sbjct: 33  IIVTMKDIMIKRWVILFFMVLTCSGFGKTVLAADFQVGAEHAIVVEADSGRVLYEKDAKT 92

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTE 129
           P   ASLTK++T Y++ + ++S +L L+ Q+ +S  A      ++ S +   +K  ++ +
Sbjct: 93  PDAIASLTKLVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPF-DKKTYSVQ 151

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD----- 184
             + A +  S+N  + A  E ++GSE  F   M  +    G+ +    NASGL +     
Sbjct: 152 DLLTATLVASSNSAAIALAEKVAGSEPHFVNQMREQLSHWGITSGKILNASGLPNEVLKD 211

Query: 185 ---------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM- 234
                    +    +A+D A++ + L ++FP+  +     +  +    I + N+LL  M 
Sbjct: 212 HRYPGSTLEEENTLSAQDVAVVTMHLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMA 271

Query: 235 ---HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS----QERDQKALELITS 286
                +DG+KTG T  +G  +V +       ++ V++    S      R ++A  L+  
Sbjct: 272 KGRAGVDGLKTGTTDLAGHCLVVTSIENGMRVITVILNADGSDKNQNTRFEQANRLLDY 330


>gi|229181636|ref|ZP_04308961.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
 gi|228601832|gb|EEK59328.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
          Length = 423

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 59/299 (19%), Positives = 132/299 (44%), Gaps = 28/299 (9%)

Query: 62  NKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPS 116
           +  ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S
Sbjct: 42  DTGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFS 101

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
            +  ++   +T ++   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   +
Sbjct: 102 NVPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKF 161

Query: 177 KNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN- 221
            NA+GL++ +                 +ARD  +L   +   +P+  +    R   + + 
Sbjct: 162 VNATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDN 221

Query: 222 ----RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                 + N N +L          DG+KTG +  +G+    + +  D  +++V++   + 
Sbjct: 222 HPKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSM 281

Query: 274 QERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
            ER  ++ ELI         +  + ++ + +S    K+  +    ++  +   K  +K 
Sbjct: 282 DERFTESRELIEYGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKE 340


>gi|188588227|ref|YP_001921472.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498508|gb|ACD51644.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 289

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 68/280 (24%), Positives = 128/280 (45%), Gaps = 17/280 (6%)

Query: 28  IQLMGKILFLSIIMISMASELHAKP-----KYSSIVIDVNKNQMTGFKQDEPRYP-ASLT 81
           I ++  I+F  I   +  ++   K         +I +D    ++   +      P AS T
Sbjct: 11  ITMLLSIMFFQIFSKAALADSKLKDNFRVNARCAIALDRESKEVLFEQNAYEIVPMASTT 70

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K++T  I  E        L+ ++ +SK AA+   SK+  K       ++    L+ +S N
Sbjct: 71  KILTAIIAIEQGD-----LDKKVVISKNAASIRGSKVGYKAGEEVGLKELTFGLMFKSGN 125

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D + A  E + GS + FA +M++ A  IG+ ++ +++  GL   +  ++A D A+L    
Sbjct: 126 DAAIAIAETLGGSVEGFAQIMNHYATGIGIIDSHFESPHGLDSNSHYSSAYDLALLTAKG 185

Query: 202 RK--NFPQYYKYFSIRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
            +   F +      I K +Y   R   N NK+L  +   +G+KTGYT  +G  +V+S+ +
Sbjct: 186 MEFDLFREIVGSKQISKEKYNFTRDYNNINKILWLIPEANGVKTGYTGGAGKCLVSSVNH 245

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
           +   I+ VV+  P   +R  +  ++    LE    ++   
Sbjct: 246 QGKDIIIVVLNCP---DRWAQTQKIYNHILETVAFENHNI 282


>gi|227892363|ref|ZP_04010168.1| D-alanyl-D-alanine serine family carboxypeptidase [Lactobacillus
           salivarius ATCC 11741]
 gi|227865770|gb|EEJ73191.1| D-alanyl-D-alanine serine family carboxypeptidase [Lactobacillus
           salivarius ATCC 11741]
          Length = 417

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 61/264 (23%), Positives = 113/264 (42%), Gaps = 25/264 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I +D    Q+   K D+  YP AS++K++T YI+ + +   ++   T++  + T  
Sbjct: 40  AKSAIAVDAKTGQIIYAKDDKQTYPVASMSKLLTAYILLQAIHKGEITWETRVTPTATEV 99

Query: 112 T----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                   + + L+E   +T  Q   A++  SAN  +   G  ISG++ KF   M   AK
Sbjct: 100 DISNNTELTNVPLQEGHSYTIRQLYQAMLVGSANAATMLIGNAISGTQTKFIDKMRETAK 159

Query: 168 KIGMQNTIYKNASGLHDK--------------NQITTARDQAILGILLRKNFPQYYKYFS 213
            +G+ +    +A+GL  K                  + RD AI+   L K +P+  +   
Sbjct: 160 SLGITDAKIYSANGLTAKYLGDEIYPNTDENAENEFSVRDMAIISQKLIKEYPEILETTK 219

Query: 214 IRKFRYRN----RIITNHNKLLNKMHN--IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           +    + +      + N N+LL    N  +DG+KTG +  +G+   ++       I+ V+
Sbjct: 220 LTMIDFNDNGEITTVNNTNELLQDDSNLEVDGLKTGTSDAAGYCFASTTNKDGHRIITVI 279

Query: 268 MGMPTSQERDQKALELITSFLEKK 291
            G   +  R  +   L+       
Sbjct: 280 AGAKDNDARFDQTKNLLNYIYNNY 303


>gi|229065037|ref|ZP_04200334.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
 gi|228716242|gb|EEL67956.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
          Length = 425

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 64/301 (21%), Positives = 134/301 (44%), Gaps = 37/301 (12%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 45  TGKILHEQNPDELLAIASMSKLIVIYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 104

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 105 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 164

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  IL   +   +P+  +    R   + +  
Sbjct: 165 NATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKTIITKYPEMLEDTKQRFRNFPDNH 224

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    +    D  +++V++   +  
Sbjct: 225 PKPIRMENWNWMLPGAAFAYEGADGLKTGSSDTAGYGFTITATRGDLRLISVIIKTKSMD 284

Query: 275 ERDQKALELITSF---LEKKTLKHQQTHR------KDNLSSTSLKKSLMIKKLKRTYSQF 325
           ER  ++  LI       EK+ LK  + ++      K++  + + +K + +   K + S +
Sbjct: 285 ERFTESRALIEYGFNNFEKQKLKIDKNNKISVVKGKEDYVTVAPEKEVTVVTAKGSKSPY 344

Query: 326 K 326
           K
Sbjct: 345 K 345


>gi|317470930|ref|ZP_07930309.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
 gi|316901581|gb|EFV23516.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
          Length = 374

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 64/301 (21%), Positives = 130/301 (43%), Gaps = 38/301 (12%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS-----------------IVIDVNKNQM 66
           +++ ++ +  +L  ++++ +      A  +  +                 I++D    ++
Sbjct: 1   MKKFVKRLLVMLTAAVLVTAGTVPAKAAERGLATKEDTNADKPSINGVCGILMDAKTGKI 60

Query: 67  TGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKE 122
              K  D+  YPAS+TK++T  +  E        L + +  S+ A        + + +K 
Sbjct: 61  LYAKNIDKKSYPASITKILTTLVAIEN----NDDLYSTVKFSRHAVNSIEPGSTHIGIKA 116

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
                    +  ++  SAN+      E  SGS +KFA LM+ KAK+IG + + + N +GL
Sbjct: 117 GEEIPLMDVLYGIMLESANEACNGVAEHTSGSIEKFADLMNKKAKEIGCKGSHFMNPNGL 176

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKY-------FSIRKFRYRNRIITNHNKLLNK-- 233
           H+     TARD A++     +N P + K         S      + R + NH+K++ +  
Sbjct: 177 HNDKHYVTARDMALITKAALQN-PMFRKIACSSHYFMSGTNKEKKGRELWNHHKMVKQTM 235

Query: 234 --MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
                ++G KTGYT  +G  +VT  +  +  +++V++      E  +  ++L     +  
Sbjct: 236 FLYKGVEGGKTGYTTRAGGTLVTFAKRGETELISVILRG-NGYELYRDTIKLFDYGFKNY 294

Query: 292 T 292
            
Sbjct: 295 K 295


>gi|227486588|ref|ZP_03916904.1| serine family D-Ala-D-Ala carboxypeptidase [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227235406|gb|EEI85421.1| serine family D-Ala-D-Ala carboxypeptidase [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 402

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 76/283 (26%), Positives = 143/283 (50%), Gaps = 22/283 (7%)

Query: 24  IQRNIQLMGKIL--FLSIIMISMASELH-----AKPKYSSIVIDVNKNQMTGFKQ-DEPR 75
           ++   +L   I+  F+ ++ IS+A+  +      +   + I+ +    ++   K  DEPR
Sbjct: 1   MKYKYKLASLIMAAFIFLMPISLAAGQNKIVGLDENVKAYIIANEENGEVYYEKNADEPR 60

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGI 132
             ASL+K+MT  +  + + S  L L+T++   K A    +   S L +KE   +T ++ +
Sbjct: 61  AMASLSKLMTFLVTMDAIHSGALKLDTKVKADKEAEKLTSWEYSSLGVKEGETYTVDELL 120

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN---QIT 189
             LI  S ND +      +S SE  FA  M+ KAK++ +++ +Y N+SG+  ++     +
Sbjct: 121 KGLIAVSGNDCAYLLANTVSVSEPAFAREMNEKAKELDLKSQVYYNSSGVQTEDGYQNTS 180

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII--TNHNKLLNKMHNIDGIKTGYTRN 247
           +ARD   L   + K +P+   Y +IR+ +   R I   +   L++++  +DG+KTG T  
Sbjct: 181 SARDLFKLSQYILKTYPEILDYAAIREIKDPGRDIDKKSTIPLMDEIKGVDGLKTGTTDE 240

Query: 248 SGFNIVTSLRY------KDDPIVAVVMGMPTSQERDQKALELI 284
           +G+ +VT++         D   + VVMG      R++   +LI
Sbjct: 241 AGYCLVTTVDMSKLDSNDDFRSIGVVMGADQKDTRNKVMSDLI 283


>gi|303228596|ref|ZP_07315422.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516688|gb|EFL58604.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 279

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 64/269 (23%), Positives = 119/269 (44%), Gaps = 15/269 (5%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTL 86
           +  +G +L L  +    A    +    + ++ID +  ++   K  +   +PAS TKM+TL
Sbjct: 14  LAFIGAML-LGTVAHGAAPTPPSTIGEAVVLIDADNKEILFAKNPDKWMHPASTTKMVTL 72

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
               E    K   L+    +S  A +   S L ++     T E  +  ++  S ND +  
Sbjct: 73  LTALEL---KGTQLDELATISPYATSMEESNLGVQVGDQITLEGVLEGMMVASGNDAAVV 129

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E +SGS + FA  M+  A K G +N+++ N  GL      +TARD A++     K + 
Sbjct: 130 VAENVSGSVENFAKDMNRIAAKAGAKNSVFLNPHGLTQMGHHSTARDLALIAAYGMK-YQ 188

Query: 207 QYYKYFSIRKFR--YRNR---IITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
            +    +   ++  Y+NR    I   N  + NK    +G+KTG+T  +G  ++ S     
Sbjct: 189 MFRDKVANDYYKVPYQNRAPETIRTTNHFIRNKYPGANGLKTGFTNAAGECLIASATRNG 248

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLE 289
             ++ V++       R  +A++ +    +
Sbjct: 249 HTMIVVML---NDDNRWNEAVQFLDYGFK 274


>gi|238019958|ref|ZP_04600384.1| hypothetical protein VEIDISOL_01834 [Veillonella dispar ATCC 17748]
 gi|237863482|gb|EEP64772.1| hypothetical protein VEIDISOL_01834 [Veillonella dispar ATCC 17748]
          Length = 285

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 64/277 (23%), Positives = 119/277 (42%), Gaps = 18/277 (6%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY----SSIVIDVNKNQMTGFKQDEP-RYPA 78
           I + + LM   +   I+  S++   +  P      + ++ID +  ++   K  +   +PA
Sbjct: 11  ILKRLILMIAFIGAVILGASISHAAYIAPPSTVGEAVVLIDADTKEILFAKNPDKWMHPA 70

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           S TKM+TL    E    K   L+    +S  A +   S L ++     T E  +  ++  
Sbjct: 71  STTKMVTLLTALEL---KGTQLDELATISSYATSMEESNLGVRVGDQITLEGVLEGMMVA 127

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND +    E +SGS + FA  M+  A K G +N+++ N  GL      +TARD A++ 
Sbjct: 128 SGNDAAVVVAENVSGSVENFAKDMNRVAAKAGAKNSVFLNPHGLTQMGHHSTARDLAMIA 187

Query: 199 ILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNI 252
               K +  +       Y+ +         I   N  + NK    +G+KTG+T  +G  +
Sbjct: 188 AYGMK-YQMFRDKVANDYYKVPYQNRTPETIRTTNHFIRNKYPGANGLKTGFTNAAGECL 246

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           + S       ++ V++       R  +A++ +    +
Sbjct: 247 IASATRNGHTMIVVML---NDDNRWDEAVQFLDYGFK 280


>gi|227872772|ref|ZP_03991092.1| conserved hypothetical protein [Oribacterium sinus F0268]
 gi|227841371|gb|EEJ51681.1| conserved hypothetical protein [Oribacterium sinus F0268]
          Length = 464

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 82/326 (25%), Positives = 147/326 (45%), Gaps = 26/326 (7%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPA 78
           G I++  +      ILF S++ ++ +         S+IV+D     +   K  + R YPA
Sbjct: 10  GRIFLLLSFCFF--ILFHSVVAMAASWPTADLTAESAIVVDAETGAVLYEKNGDVREYPA 67

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGILAL 135
           S+TK+MT  ++ E+       L  ++  S  A     +  S   ++E    T    + AL
Sbjct: 68  SITKVMTALVVLEHA-----SLEDKVTFSHDAVYNVDRGSSNAQIEEGDVLTVNDCLHAL 122

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           + +SAN+ + A  E ++GS + FA +M+ KAK++G   T ++N SGL D+N  TTARD A
Sbjct: 123 LLKSANEAANALAEHVAGSREAFAEMMNEKAKELGCTGTHFQNPSGLQDENHYTTARDMA 182

Query: 196 ILGILLRKN--FPQYYKYFS-----IRKFRYRNRIITNHNKLLNKMHNID----GIKTGY 244
           ++G+   +N  F +  K  S     +++    N I   H  +L+     D      KTGY
Sbjct: 183 LIGMAAFQNKAFLEIEKNLSHTLGNLKRLPEGNTIYMEHKMMLSNTKFYDKRVVAGKTGY 242

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNL 304
           T+ +G  +++    +   +V VV+              L+     +      QT  +   
Sbjct: 243 TQIAGNTLISLAEDQGRKVVTVVLKDKNP-SHYTDTKALLDLAFSET---ENQTLGEHPG 298

Query: 305 SSTSLKKSLMIKKLKRTYSQFKKIDA 330
           +  +L+K L+        ++   +D 
Sbjct: 299 ALEALRKELVSAGKITEENKIHFLDT 324


>gi|295101852|emb|CBK99397.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
           L2-6]
          Length = 319

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 69/288 (23%), Positives = 116/288 (40%), Gaps = 26/288 (9%)

Query: 23  YIQRNIQLMGKILFLSIIMIS-----MASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
           + +R + L+    F++   +S           A P+ S  + D +  +    +  + PR 
Sbjct: 6   FARRLLALVLTAAFMTTAALSGFAVYAMPIQAAYPQESIYLFDADTGEALVEQNPDLPRC 65

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-----PSKLYLKEKTYFTTEQG 131
            ASLTKMMT  ++ E      L     IP S T   Q+        + L+          
Sbjct: 66  VASLTKMMTALLVLESGTD--LSAGITIPASLTPELQSIRANRGHTIGLQAGETVRRIDM 123

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + A++  SAND ++      SGS   FA  M+ +A ++G   T +    GL+D    +TA
Sbjct: 124 MYAMLLPSANDAASVLAVDTSGSLAAFAAQMNVRASQLGCTATHFTCPHGLYDGGNYSTA 183

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR------YRNRIITNHNKLLNKMHN-----IDGI 240
           RD A + +    + P Y +      ++      +  R +T  NKLL            G+
Sbjct: 184 RDMAKIALACYAD-PTYRQIADTMSYKLPATNVHPARTVTTTNKLLQPGSGYYRSDAHGM 242

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           KTG+T  +G   VT  +        V++G  +     ++A EL     
Sbjct: 243 KTGFTTQAGRCFVTFAQQDGHTYGLVILGSNSQNI-FREAAELFDWAF 289


>gi|225020583|ref|ZP_03709775.1| hypothetical protein CORMATOL_00590 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946529|gb|EEG27738.1| hypothetical protein CORMATOL_00590 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 498

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 69/300 (23%), Positives = 122/300 (40%), Gaps = 24/300 (8%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + +V D++   + G K    RY PAS+ K+    +  E +    L LN  + VS  +A
Sbjct: 175 ASAWLVWDLDSGAVLGTKDPHGRYRPASIIKV---LLAMEVIN--NLDLNKVVTVSAESA 229

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            Q  S + +     +T    +  L+ +S ND + A  + + G+E+  A  ++  A  +G 
Sbjct: 230 NQEGSAVGIGPGGKYTIRDLLHGLLLQSGNDAAHALAQELGGNEQALA-RVNALAHNLGA 288

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR------IIT 225
            +T   + SGL      T+ARD AI      KN P + +     ++++          I 
Sbjct: 289 TDTYAASYSGLDAPGMSTSARDMAIFYHYAWKN-PTFAQIVGTDEYKFPGYQDNPGWPIG 347

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-DQKALELI 284
           N N LL    +  G KTG+T ++    V + +  +  I AV++     + R  Q+A +LI
Sbjct: 348 NDNGLLMNDPDGIGGKTGFTSDANHTFVGAKKVGNRRIAAVILDTTVDKGRPWQQAQKLI 407

Query: 285 T---------SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
                       L +      Q  +  + S+T   + +           +     K  ST
Sbjct: 408 DDNRNVTANVGMLPQPGAAGAQASQHPSASATPSPRPIQEVHASSGDGTYASQFMKNRST 467


>gi|254500365|ref|ZP_05112516.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii
           DFL-11]
 gi|222436436|gb|EEE43115.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii
           DFL-11]
          Length = 320

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 118/229 (51%), Gaps = 1/229 (0%)

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT  I F+ L+   + L+T + +S  A  Q+ +   LK     T E  + A++  SAN+V
Sbjct: 1   MTALITFQALERGDVDLSTPVILSHNAMDQSAAYAGLKVGNAMTLEDALYAVLVGSANEV 60

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           + A  E ++G+E  F  LM+ +A ++G+  T + N +GL D+ Q  +ARD A+LG  L +
Sbjct: 61  AVALAETVAGTEAAFVDLMNAQADRLGLTATHFTNPNGLFDQKQTVSARDLAVLGRDLFQ 120

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
            +P Y + F        ++ + ++N+L+ +     G+KTG+  ++G NIV         +
Sbjct: 121 VYPDYRRMFRTAAVTIDDKELISYNELITRYPGTLGLKTGFVCSAGRNIVAIAERDGKRL 180

Query: 264 VAVVMGMPTSQERDQKALELI-TSFLEKKTLKHQQTHRKDNLSSTSLKK 311
           +AVV+G  T +ER ++  +L   +F    T   Q      N S T  + 
Sbjct: 181 LAVVLGATTGRERSERTAKLFDDAFAGNLTANGQALAELPNASETQPED 229


>gi|15675077|ref|NP_269251.1| putative D,D-carboxypeptidase, penicillin-binding protein
           [Streptococcus pyogenes M1 GAS]
 gi|13622233|gb|AAK33972.1| putative D,D-carboxypeptidase, penicillin-binding protein
           [Streptococcus pyogenes M1 GAS]
          Length = 411

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 69/310 (22%), Positives = 141/310 (45%), Gaps = 30/310 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
           I+R + L   +L  S    ++ +         +IV++ +  ++   K  + P   ASLTK
Sbjct: 2   IKRWVILFFMVLTCSGFGKTVLAADFQVGAEHAIVVEADSGRVLYEKDAKTPDAIASLTK 61

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++ + ++S +L L+ Q+ +S  A      ++ S +   +K  ++ +  + A +  
Sbjct: 62  LVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPF-DKKTYSVQDLLTATLVA 120

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK------------- 185
           S+N  + A  E ++GSE  F   M  +    G+ +    NASGL ++             
Sbjct: 121 SSNSAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKDHRYPGSALE 180

Query: 186 -NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
              + +A+D AI+ + L ++FP+  +     +  +    I + N+LL  M      +DG+
Sbjct: 181 EENMLSAQDVAIVTMHLLEDFPEILEITKQTEVDFAGNSIKSFNQLLPGMAKGRAGVDGL 240

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS----QERDQKALELITSFLEKKTLKHQ 296
           KTG T  +G  +V +       ++ V++    S      R ++A  L+      +T   +
Sbjct: 241 KTGTTDLAGHCLVVTSIENGMRLITVILNADGSDKNQNTRFEQANRLLDYVA--RTYCRR 298

Query: 297 QTHRKDNLSS 306
           +  +K +L S
Sbjct: 299 KILKKGSLVS 308


>gi|160937986|ref|ZP_02085343.1| hypothetical protein CLOBOL_02879 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438980|gb|EDP16735.1| hypothetical protein CLOBOL_02879 [Clostridium bolteae ATCC
           BAA-613]
          Length = 492

 Score =  205 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 126/293 (43%), Gaps = 34/293 (11%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY---------SSIVIDVNKNQMTGFKQ-DE 73
           I R I  +   L +   M ++ +   AKP +         + IV+D++   +   +   E
Sbjct: 14  IMRRISYIITSLIMVFSMATITA--FAKPDWPIDTGIQSEAGIVMDMDSGAVLFAQNIHE 71

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTE 129
            + PAS+TK++T  ++ E        L+  +  S  A     +   +K  L+E    +  
Sbjct: 72  QKIPASITKLLTALVVIENTND----LDAPVTFSHDAIYNVESGAGNKFNLEEGDVLSVR 127

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           Q + A++ +S+N  + A  E+++GS + F  +M+ +  ++G   + + N SGL+D  Q T
Sbjct: 128 QCLYAMLLQSSNQSANALAEYVAGSRQAFVDMMNQRIAELGCNESHFANPSGLNDDTQRT 187

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRY-------RNRIITNHNKLL-----NKMHNI 237
           TA D AI+     +N P   +  S R             R  +  +K+L     N   + 
Sbjct: 188 TAYDMAIIARACFQN-PTVLEIASARTSTIPATANNPNGRTFSIEHKMLLSDDSNYYPDA 246

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              KTG+T  +G  +VT  R +    +AV +   T +        ++     K
Sbjct: 247 IAGKTGWTSQAGQTLVTYARREGRGQIAVTLKS-TQKTHYSDTKTILDFCFAK 298


>gi|313682994|ref|YP_004060732.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155854|gb|ADR34532.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sulfuricurvum
           kujiense DSM 16994]
          Length = 266

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 109/241 (45%), Gaps = 14/241 (5%)

Query: 56  SIVI-DVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++++ D+   QM   K+  +  +PASLTK+MT  +  E+ +     LN  + +++     
Sbjct: 32  ALLVKDMTSKQMLYSKEPFKELHPASLTKVMTALLAIEHGK-----LNQPVTITREMTKV 86

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
            P+    +       E  I A + +S ND + A    I GSE+ F  +M+ KAKKIGM +
Sbjct: 87  EPTIAGYRRGDVIILEDLIKAAMIKSDNDAAKAIAISIGGSEEHFVEMMNAKAKKIGMNH 146

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSIRKF---RYRNRIITNHN 228
           T + N  G  DK   +T +D   +     KN  F    +      +   ++R      HN
Sbjct: 147 THFMNPCGYDDKKHYSTPQDLLKMTEYAIKNKKFNDISRLNEHTYYSLNKHRKFYAYTHN 206

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +LLN+     G+KTGYT  +G  ++   +      V V+M      +R + A  +    L
Sbjct: 207 RLLNRYQYAVGVKTGYTAKAGPCLIARAKKDGKDCVIVMMNAKG--DRWKTAKNIFEQVL 264

Query: 289 E 289
            
Sbjct: 265 N 265


>gi|154483906|ref|ZP_02026354.1| hypothetical protein EUBVEN_01611 [Eubacterium ventriosum ATCC
           27560]
 gi|149735397|gb|EDM51283.1| hypothetical protein EUBVEN_01611 [Eubacterium ventriosum ATCC
           27560]
          Length = 494

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 72/322 (22%), Positives = 140/322 (43%), Gaps = 43/322 (13%)

Query: 29  QLMGKILFLSIIMISMASELHAKP------------------KYSSIVIDVNKNQMTGFK 70
           +++ KIL + +++ S    ++ +P                    + ++I+ +   +   K
Sbjct: 14  KIISKILIVILLISSCIGTINVEPVTVNAATKTNWPKGPSIYGQTGVLIEASTGTVLYDK 73

Query: 71  Q-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK---TAATQNPSKLYLKEKTYF 126
           + ++  YPAS+TK+MT  +  E  +     ++  +  S     +     + +        
Sbjct: 74  KCNKKMYPASITKIMTALLTIENCK-----MDEMVTFSDATIHSIQYGDANMGCSVGEKM 128

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           T +  + AL+ +SAN+V+TA GE I+GS K FA +M+ +AK+ G  NT + NA+GLHD N
Sbjct: 129 TVKDCLYALMLQSANEVATALGEHIAGSTKNFAEMMNKRAKEAGALNTHFANANGLHDPN 188

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-------IITNHNKLLNK-----M 234
              TA D A++     K +  +    +   +  ++             +K++        
Sbjct: 189 HYVTAYDMAMITRAASK-YSVFNDIVNTTTYTIKHNNKRKTDATAIQRHKMVWPTSGYYY 247

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
             I G KTG+T  SG  +VT  +     ++AVV+    +    +   EL+        L+
Sbjct: 248 DGIIGGKTGFTDQSGTTLVTYAKRNGMTLIAVVLHSNGTNV-YKDTKELLDYGFNNFGLQ 306

Query: 295 H--QQTHRKDNLSSTSLKKSLM 314
           +      R D+ +  +L+    
Sbjct: 307 NVSNNDQRFDSDNKVTLQSPFC 328


>gi|229193641|ref|ZP_04320584.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
 gi|228589794|gb|EEK47670.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
          Length = 423

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 59/299 (19%), Positives = 132/299 (44%), Gaps = 28/299 (9%)

Query: 62  NKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPS 116
           +  ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S
Sbjct: 42  DTGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFS 101

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
            +  ++   +T ++   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   +
Sbjct: 102 NVPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKF 161

Query: 177 KNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN- 221
            NA+GL++ +                 +ARD  +L   +   +P+  +    R   + + 
Sbjct: 162 VNATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKTMITKYPEMLEDTKQRFRNFPDN 221

Query: 222 ----RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                 + N N +L          DG+KTG +  +G+    + +  D  +++V++   + 
Sbjct: 222 HPKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSM 281

Query: 274 QERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
            ER  ++ ELI         +  + ++ + +S    K+  +    ++  +   K  +K 
Sbjct: 282 DERFTESRELIEYGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKE 340


>gi|150016752|ref|YP_001309006.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903217|gb|ABR34050.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 284

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 116/242 (47%), Gaps = 12/242 (4%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I +D   + +   +      P AS TK++T  I  E     + +L+ ++ +SK AA
Sbjct: 39  ARSAIALDKESHAVLFEQNAYEIVPMASTTKILTSLIAIE-----QGNLDKKVVISKKAA 93

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S +  KE    T  + +  L+ +S ND + A  E + GS + FA +M++ A+ IG+
Sbjct: 94  GIRGSTVGYKENEEITLRELVFGLMFKSGNDAAIAIAEELGGSIEGFAEIMNHYARGIGI 153

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSIRKFRYR-NRIITNHN 228
            ++ +++  GL      ++A D AIL         F +      I K +Y   R   N N
Sbjct: 154 LDSHFESPHGLDSSKHYSSAYDLAILTAKGMDYDLFREVVGSKQISKEKYNFTRDYNNIN 213

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           K+L ++   +G+KTGYT  +G  +V+S+      ++ VV+  P   +R     ++    L
Sbjct: 214 KILWRIPGANGVKTGYTGQAGKCLVSSINNNGKDVIIVVLNCP---DRWNVTEKIYNYVL 270

Query: 289 EK 290
           EK
Sbjct: 271 EK 272


>gi|149179839|ref|ZP_01858344.1| hypothetical protein BSG1_02450 [Bacillus sp. SG-1]
 gi|148852031|gb|EDL66176.1| hypothetical protein BSG1_02450 [Bacillus sp. SG-1]
          Length = 385

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 66/276 (23%), Positives = 127/276 (46%), Gaps = 19/276 (6%)

Query: 30  LMGKILFLSIIMISMASELHAKPK----YSSIVIDVNKNQMTGFKQDEPRY-PASLTKMM 84
           ++  +L       + A E + KP      S ++ID+    +   K  + R  PAS+TK+ 
Sbjct: 5   IIAILLIFITAQTATAEEEYQKPSMLFSESGVMIDMETGTILYSKNAKRRMSPASITKVA 64

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T     E     K  LN+ + +SK AA    S +YL E    T +Q ++ ++  S ND +
Sbjct: 65  TAIYAVE-----KGDLNSLVTISKEAAETEGSSVYLLEGEKMTLKQLLIGMMINSGNDAA 119

Query: 145 TAFGEFISGSEKKFAILMSNKAKK-IGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
            A  E + GS ++F+  ++   ++  G ++T + N  GL++K+  TTA D A++     K
Sbjct: 120 AAIAEHLDGSVEQFSENINQFLEEKAGAKDTHFTNPHGLYEKDHYTTAEDMALITSYAMK 179

Query: 204 NFPQYYKYFSIRKFRYR----NRIITNHNKLLNK---MHNIDGIKTGYTRNSGFNIVTSL 256
           N   +   F++++  ++    N  + NH+K++        + G K GY   S   +VT+ 
Sbjct: 180 N-EAFQDLFALKEIGWKGEGWNTTLYNHHKMVKGEVVYPEVTGGKNGYVDESKHTLVTTA 238

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
             ++  +  V++   +          L+   L + +
Sbjct: 239 SNENLSVAVVLLKAQSKTAAYNDTSVLLDYGLNQFS 274


>gi|21910291|ref|NP_664559.1| putative D,D-carboxypeptidase, penicillin-binding protein
           [Streptococcus pyogenes MGAS315]
 gi|28895868|ref|NP_802218.1| D,D-carboxypeptidase, penicillin-binding protein [Streptococcus
           pyogenes SSI-1]
 gi|21904486|gb|AAM79362.1| putative D,D-carboxypeptidase, penicillin-binding protein
           [Streptococcus pyogenes MGAS315]
 gi|28811118|dbj|BAC64051.1| putative D,D-carboxypeptidase, penicillin-binding protein
           [Streptococcus pyogenes SSI-1]
          Length = 415

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 72/316 (22%), Positives = 146/316 (46%), Gaps = 32/316 (10%)

Query: 19  YGSIYIQRNIQLMGKILFLS-IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
              I I+R   L   +L  S +  I +A++  A  ++ +IV++ +  ++   K  + P  
Sbjct: 1   MKDIMIKRWAILFFVVLTCSGLSKIVLAADFQAGAEH-AIVVEADSGRVLYEKDAKTPDA 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGI 132
            ASLTK++T Y++ + ++S +L L+ Q+ +S  A      ++ S +   +K  ++ +  +
Sbjct: 60  IASLTKLVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPF-DKKTYSVQDLL 118

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-------- 184
            A +  S+N  + A  E ++GSE  F   M  +    G+ +    NASGL +        
Sbjct: 119 TATLVASSNSAAIALAEKVAGSEPHFVNQMREQLSHWGITSGKILNASGLPNEVLKDHRY 178

Query: 185 ------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM---- 234
                 +    +A+D A++ + L ++FP+  +     +  +    I + N+LL  M    
Sbjct: 179 PGSALEEENTLSAQDVAVVTMHLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMAKGR 238

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS----QERDQKALELITSFLEK 290
             +DG+KTG T  +G  +V +       ++ V++    S      R ++A  L+      
Sbjct: 239 AGVDGLKTGTTDLAGHCLVVTSIENSMRVITVILNADGSDKNQNTRFEQANRLLDYVA-- 296

Query: 291 KTLKHQQTHRKDNLSS 306
           +T   ++  +K +L S
Sbjct: 297 RTYCRRKILKKGSLVS 312


>gi|251780348|ref|ZP_04823268.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084663|gb|EES50553.1| putative D-alanyl-D-alanine carboxypeptidase DacB [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 289

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 68/280 (24%), Positives = 128/280 (45%), Gaps = 17/280 (6%)

Query: 28  IQLMGKILFLSIIMISMASELHAKP-----KYSSIVIDVNKNQMTGFKQDEPRYP-ASLT 81
           I ++  I+F  I   +  ++   K         +I +D    ++   +      P AS T
Sbjct: 11  ITMLLSIMFFQIFSKTALADSKLKDNFRVNARCAIALDRESKEVLFEQNAYEIVPMASTT 70

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K++T  I  E        L+ ++ +SK AA+   SK+  K       ++    L+ +S N
Sbjct: 71  KILTAIIAIEQGD-----LDKKVVISKNAASIRGSKVGYKAGEEVGLKELAFGLMFKSGN 125

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D + A  E + GS + FA +M++ A  IG+ ++ +++  GL   +  ++A D A+L    
Sbjct: 126 DAAIAIAETLGGSVEGFAQIMNHYATGIGIIDSHFESPHGLDSNSHYSSAYDLALLTAKG 185

Query: 202 RK--NFPQYYKYFSIRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
            +   F +      I K +Y   R   N NK+L  +   +G+KTGYT  +G  +V+S+ +
Sbjct: 186 MEFDLFREIVGSKQISKEKYNFTRDYNNINKILWLIPEANGVKTGYTGGAGKCLVSSVNH 245

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
           +   I+ VV+  P   +R  +  ++    LE    ++   
Sbjct: 246 QGKDIIIVVLNCP---DRWAQTQKIYNHILETVAFENHNI 282


>gi|94994364|ref|YP_602462.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS10750]
 gi|94547872|gb|ABF37918.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS10750]
          Length = 451

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 69/321 (21%), Positives = 142/321 (44%), Gaps = 30/321 (9%)

Query: 13  TFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD 72
             +      I I+R + L   +L  S    ++ +         +IV++ +  ++   K  
Sbjct: 31  FVIIVTMKDIMIKRWVILFFMVLTCSGFGKTVLAADFQVGAEHAIVVEADSGRVLYEKDA 90

Query: 73  E-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           + P   ASLTK++T Y++ + ++S +L L+ Q+ +S  A      ++ S +   +K  ++
Sbjct: 91  KTPDAIASLTKLVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPF-DKKTYS 149

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-- 185
            +  + A +  S+N  + A  E ++GSE  F   M  +    G+ +    NASGL ++  
Sbjct: 150 VQDLLTATLVASSNSAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVL 209

Query: 186 ------------NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +A+D A++ + L ++FP+  +     +  +    I + N+LL  
Sbjct: 210 KDNRYPGSALEEENTLSAQDVAVVTMHLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPG 269

Query: 234 MH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS----QERDQKALELIT 285
           M      +DG+KTG T  +G  +V +       ++ V++    S      R ++A  L+ 
Sbjct: 270 MAKGRAGVDGLKTGTTDLAGHCLVVTSIENGMRVITVILNADGSDKNQNTRFEQANRLLD 329

Query: 286 SFLEKKTLKHQQTHRKDNLSS 306
                +T   ++  +K +L S
Sbjct: 330 YVA--RTYCRRKILKKGSLVS 348


>gi|146280427|ref|YP_001170580.1| D-alanyl-D-alanine endopeptidase [Pseudomonas stutzeri A1501]
 gi|145568632|gb|ABP77738.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas stutzeri A1501]
          Length = 390

 Score =  205 bits (522), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 67/285 (23%), Positives = 125/285 (43%), Gaps = 22/285 (7%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP------KYSSIVIDVNKNQMTGFKQDEPRYP 77
           I +  + +  +LF  +  + +     AKP        S++++D+N N++      +   P
Sbjct: 78  IVKLRRTVASLLFACLASLPVIHAQAAKPMVQELASGSALLVDLNTNEVLYSSNPDMVVP 137

Query: 78  -ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAATQNPSKLYLKEKTYFTTEQGILAL 135
            AS+TK+MT  ++ +     KL L+  +PV+ + A         ++  +  +  + +L  
Sbjct: 138 IASVTKLMTAMVVLDA----KLPLDQALPVTIRDAKEMQGVYSRVRIGSEISRREMLLLT 193

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S N  + +      G    F   M+ KA+ +GM  T Y   +GL ++N +++A D  
Sbjct: 194 LMSSENRAAASLAHHYPGGYAAFIQAMNAKARALGMSRTHYVEPTGLSERN-VSSANDLV 252

Query: 196 ILGILLRKNFPQYYKYFSIRK----FRYRNRII--TNHNKLLNK-MHNIDGIKTGYTRNS 248
            L I   + +P   ++ +  +    FR  N  +   N N L+ K   +I   KTG+T  +
Sbjct: 253 KL-IRASRQYPLIQQFSTTDEKTVAFRKPNYTLGFRNTNALVRKNNWDIQLSKTGFTNAA 311

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
           G  +V S   K  P+  VV+           A  L   +LE  T+
Sbjct: 312 GHCLVMSTTMKQRPVAFVVLDAFGKYTHMADANRL-KKWLETGTV 355


>gi|254518751|ref|ZP_05130807.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp.
           7_2_43FAA]
 gi|226912500|gb|EEH97701.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp.
           7_2_43FAA]
          Length = 389

 Score =  205 bits (522), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 66/261 (25%), Positives = 121/261 (46%), Gaps = 15/261 (5%)

Query: 53  KYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++I ID    Q+    K  E    AS TK++T  I   Y       L+  + +SK A+
Sbjct: 65  ARNAIAIDAESRQVLWNQKGYEIVPMASTTKILTSLIAINYGD-----LDRIVTISKNAS 119

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S +  K     T  + +  L+ RS ND + A  E I GS + F+ +M++ A+ +G+
Sbjct: 120 SIRGSTVGYKAGEKITMRELLFGLMFRSGNDAAIAIAEDIGGSVENFSNIMNDFARSLGI 179

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSIRKFRYR-NRIITNHN 228
            ++ +++  GL      ++A D AIL     +   F +      I K +Y   R   N N
Sbjct: 180 IDSHFESPHGLDSAKHYSSAYDLAILTAKGMEYDVFREIVGEKVIYKDKYNFTRDYQNIN 239

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           K+L ++   +G+KTGYT  +G  +V+S+ +    I+ VV+      +R     ++    +
Sbjct: 240 KILYRIPGANGVKTGYTGGAGKCLVSSVNHNGRNIIIVVLNCV---DRWNVTEKIFNYVI 296

Query: 289 EKKTLK---HQQTHRKDNLSS 306
              T     ++   +++NL+ 
Sbjct: 297 STNTFAEISNKDILQRENLAG 317


>gi|227890476|ref|ZP_04008281.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus johnsonii ATCC
           33200]
 gi|227849045|gb|EEJ59131.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus johnsonii ATCC
           33200]
          Length = 308

 Score =  205 bits (522), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 111/257 (43%), Gaps = 22/257 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++ I+         K        AS+TK++T+Y+  + ++ KK+  +T +  ++     
Sbjct: 52  AAVAINAKDGSTIYAKNANQSLPIASMTKLLTVYLTLQAIKEKKISWDTTVTPTQEIVDL 111

Query: 114 NP----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 + + L+    +T  +   A + +SAN+ +      +SGSE  F   M  +A+K 
Sbjct: 112 GSNPDYASVPLRLGQKYTVRELYYAALIKSANNAARLLAIAVSGSETNFLNQMRQQARKW 171

Query: 170 GMQNTIYKNASGLHDK-----------NQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
            + N  +    GL +K               +A D AI+   L  N+P+      + +  
Sbjct: 172 KLNNAKFVTVDGLPEKKKNFLGMTTTVENKMSANDMAIVARKLIINYPEILNTTKLARAY 231

Query: 219 YRNRIITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           ++N ++ N NK+LN +        +DG+KTG T  +G     +L      ++ V++G   
Sbjct: 232 FQNTLMINSNKMLNGLSYYDSIFPVDGLKTGTTDGAGSCFTCTLNKNGKRVITVILGAEN 291

Query: 273 SQERDQKALELITSFLE 289
             ER  +  +L++    
Sbjct: 292 DNERFVETKKLLSYCFN 308


>gi|323466012|gb|ADX69699.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus helveticus H10]
          Length = 457

 Score =  205 bits (522), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 87/383 (22%), Positives = 156/383 (40%), Gaps = 52/383 (13%)

Query: 6   IQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPK------------ 53
           ++   K T L    G ++  + I+     L   I ++S  +   A  K            
Sbjct: 11  VKCKHKYTLLFKRTGFMFFSKKIKRAVISLVALISLVSCGATFSAPVKADVANYQTDQVK 70

Query: 54  ---YSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP---- 105
               S+I ID N  Q+   K  D+    AS+TK+MT+Y+    ++++KL  + ++     
Sbjct: 71  LNVKSAIAIDSNSGQVLYAKNADKTLPIASMTKLMTVYLTLNAIKNQKLAWDQKVKPTAS 130

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           + K A     S + LK    +T +Q   A +  SAN  +   G+ I+GS+K F   M ++
Sbjct: 131 IVKVANNAEYSNVPLKMGHSYTIKQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRSQ 190

Query: 166 AKKIGMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKY 211
            KK G+++     A GL + N                 +A+D AI+G  L ++FP+    
Sbjct: 191 VKKWGIKDAKIYTACGLPNGNVGKDAYPGVNKNAENSMSAKDMAIVGQNLIQDFPEVLDT 250

Query: 212 FSIRKFRYRNRIIT----NHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDD 261
             +    ++++  T    N N +L  +      + +DG+KTG T  +G   + ++ +   
Sbjct: 251 TKLAHLDFKDQGHTTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVNHAGA 310

Query: 262 PIVAVVMGMP----TSQERDQKALELITSFLEKK---TLKHQ-QTHRKDNLSSTSLKKSL 313
            ++ VVMG      T   R  +  +L+     K    T     Q     N+  T    + 
Sbjct: 311 RLITVVMGARHKDGTDPARFMQTKKLMNYVFTKYRPVTFNAGSQMAGVKNIKVTDGDNAT 370

Query: 314 MIKKLKRTYSQFKKIDAKAHSTQ 336
               LK   + +   D K    +
Sbjct: 371 TNLGLKEKTTIWDPADGKTLVAK 393


>gi|221632467|ref|YP_002521688.1| penicillin-binding protein dacF [Thermomicrobium roseum DSM 5159]
 gi|221157156|gb|ACM06283.1| penicillin-binding protein dacF precursor [Thermomicrobium roseum
           DSM 5159]
          Length = 503

 Score =  205 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 102/237 (43%), Gaps = 17/237 (7%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK 121
             ++   K+ D PR PASLTK+ T     E         +T + V         S + L+
Sbjct: 22  SGRVLYAKEPDAPRAPASLTKLATALTAVELAPR-----DTVLTVQAQDL-VGESSMGLR 75

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISG--------SEKKFAILMSNKAKKIGMQN 173
                T E  +  L+  S ND +      +SG        +  +F   M+  A+++G++ 
Sbjct: 76  PGEQITLEAALYGLLLASGNDAAMTIARNLSGLPGDTPEAAVNRFVKQMNLLAQRLGLER 135

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           T ++N  GL  +  +TTARD A+L   + +  P+  +      +      +   N+LL +
Sbjct: 136 TTFRNPHGLDQEGHVTTARDLALLTRAVLQR-PELRRILQTPSYDDGVHAVQTTNRLLGR 194

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + G KTG T  +G++++ +       ++ VV+G  T       A++L+     +
Sbjct: 195 YPGLIGGKTGITEAAGYSLIEAAERDGTTVIVVVLGS-TRDAWYADAVQLLDYAFAQ 250


>gi|19746044|ref|NP_607180.1| D,D-carboxypeptidase, penicillin-binding protein [Streptococcus
           pyogenes MGAS8232]
 gi|19748212|gb|AAL97679.1| putative D,D-carboxypeptidase, penicillin-binding protein
           [Streptococcus pyogenes MGAS8232]
          Length = 411

 Score =  205 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 72/313 (23%), Positives = 141/313 (45%), Gaps = 32/313 (10%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
           I+R   L   +L  S +  ++ +         +IV++V+  ++   K  + P   ASLTK
Sbjct: 2   IKRWAILFFVVLACSGLGKTVLAADFQVGAEHAIVVEVDSGRVLYEKDAKTPDAIASLTK 61

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++ + + S +L L+ Q+ +S  A       + S +   +KTY + +  + A +  
Sbjct: 62  LVTAYLVLDKVNSGQLQLSDQVNLSDYAFELTTDSSLSNVPFDQKTY-SVQDLLEATLVA 120

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-------------- 184
           S+N  + A  E ++GSE  F   M  +  + G+ +    NASGL +              
Sbjct: 121 SSNSAAIALAEKVAGSEPNFVAQMRAQLSRWGITSGKILNASGLPNEVLKDHRYPGSALE 180

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
           +  + +A+D AI+ + L ++FP+  +     +  +    I + N+LL  M      +DG+
Sbjct: 181 EENMLSAQDVAIVTMHLLEDFPEILEITKQTEVDFAGNSIKSFNQLLPGMAKGRAGVDGL 240

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS----QERDQKALELITS----FLEKKT 292
           KTG T  +G  +V +       ++ V++    S      R ++A  L+      +  +K 
Sbjct: 241 KTGTTDLAGHCLVVTSIENGMRVITVILNADGSDKNQNTRFEQANRLLDYVARTYCRRKI 300

Query: 293 LKHQQTHRKDNLS 305
           LK      + +L 
Sbjct: 301 LKKGSLVLERSLP 313


>gi|260590039|ref|ZP_05855952.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
           20583]
 gi|260539551|gb|EEX20120.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
           20583]
          Length = 448

 Score =  205 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 72/260 (27%), Positives = 111/260 (42%), Gaps = 21/260 (8%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
                    S ++++ +  Q+   K  +E RYPAS TK+MT  II E +      LN  I
Sbjct: 75  PSAPEISSASGVLMEASSGQVLFDKSMNEIRYPASTTKVMTALIILENIPD----LNKNI 130

Query: 105 PVSKT---AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
             +           S +  +     T EQ + A++  SAN+V T     ++GS + F  +
Sbjct: 131 TFTDIILPDLAPGNSTINAQVGEVLTVEQCLYAIMLASANEVCTQMAVEVAGSVENFTAM 190

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR- 220
           M+ KA +IG  NT + NA+GL D N  TTA D A++     KN   + K     K+    
Sbjct: 191 MNAKAAEIGCTNTHFVNANGLPDPNHYTTAYDLALILREAVKN-EAFCKIAGAAKYTIPP 249

Query: 221 ------NRIITNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
                 +R + NHN LL             KTG+T  +   +VT+   +D  ++ VV+  
Sbjct: 250 TNKTAASRNMENHNALLVDGKYYYEGAIAGKTGHTEAARNTLVTAASREDMTLICVVLRS 309

Query: 271 PTSQERDQKALELITSFLEK 290
               ER      L     + 
Sbjct: 310 END-ERFTDTRTLFDYGFDN 328


>gi|228903867|ref|ZP_04067982.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           4222]
 gi|228855776|gb|EEN00321.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           4222]
          Length = 423

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 59/298 (19%), Positives = 130/298 (43%), Gaps = 28/298 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 43  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKVGLKKYKFV 162

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           N++GL++ +                 +ARD  IL   +   +P+  +    R   + +  
Sbjct: 163 NSTGLNNADLKGKHPEGTDPTGENSMSARDMGILAKTIITKYPEMLEDTKQRFRNFPDNH 222

Query: 222 ---RIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 223 PKPIRMENWNWMLPGAAFSYDGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
           ER  ++ ELI         +  + ++ + +S    K+  +    ++  +   K  +K 
Sbjct: 283 ERFTESRELIEHGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKE 340


>gi|126642515|ref|YP_001085499.1| putative D-ala-D-ala-carboxypeptidase penicillin-binding protein
           [Acinetobacter baumannii ATCC 17978]
          Length = 376

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 106/212 (50%), Gaps = 9/212 (4%)

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSK--TAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           MM  YI  + +++ KL LN  I  +   +    + S++YLK     + +Q +  LI  SA
Sbjct: 1   MMVAYIALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIVMSA 60

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND +    E ISG    F   M+ +A+ +GM++T + N +G+   +  TTA D ++L   
Sbjct: 61  NDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPAGITMPDHYTTAHDLSLLSQA 120

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-- 258
           +    P+Y  Y  +  F Y  R     N  L    ++DG+KTGYT+ +G+N+  +     
Sbjct: 121 VIHQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTASRPS 180

Query: 259 -----KDDPIVAVVMGMPTSQERDQKALELIT 285
                    ++ +V+G P++ +R + A +L+ 
Sbjct: 181 FSPNLPQRRLLVIVLGTPSAVKRAEIADKLMN 212


>gi|73667472|ref|YP_303488.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ehrlichia canis str.
           Jake]
 gi|72394613|gb|AAZ68890.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ehrlichia canis str.
           Jake]
          Length = 383

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 79/327 (24%), Positives = 149/327 (45%), Gaps = 15/327 (4%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSI-VIDVNKNQMTGFKQ-DEPRYPAS 79
             + R + L+    F   + I+ A  L  + K S + + D     M      DE    +S
Sbjct: 3   FIMSRYVVLLLSCFFGIQVCINNAIALPLQTKASQVGIFDFLSETMLLEHNIDEQFVSSS 62

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           ++ +MTLY+ F Y+++  + +  +   SK A  +  + ++L+          I  +IT S
Sbjct: 63  MSNLMTLYVTFFYIKAGFVRMEDKFKTSKEAWQKGGNSIFLRAGQLVAVRDLINGIITTS 122

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AND      E ISGS+++F   M+  A+K+ +  + + N  G+ D+NQ+ +ARD   L +
Sbjct: 123 ANDACITLAEGISGSQEEFVKEMNRIAQKLNLTKSHFTNVIGVQDQNQVMSARDLITLMV 182

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            L K+FP+YY  FS + F+Y N    + N LL   + +D +   +T   G+  + + +++
Sbjct: 183 NLFKDFPEYYHLFSKKDFKYNNIYQESINMLL-PDNRVDCMIAAHTDT-GYGSIVAAKHE 240

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEK---KTLKHQQTHRKD--------NLSSTS 308
              I   + G+ T +ER  +  +L+         KT+ ++    K+             +
Sbjct: 241 GRKIFMFINGLQTKEERLSEIKQLLDYSFNNFSSKTIFNKDNKVKEIAVRGGDSKYVGAA 300

Query: 309 LKKSLMIKKLKRTYSQFKKIDAKAHST 335
             K + I   K +Y   K   +  ++ 
Sbjct: 301 FNKDVTISYPKGSYDTVKTFFSHDNTI 327


>gi|325957359|ref|YP_004292771.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus acidophilus
           30SC]
 gi|325333924|gb|ADZ07832.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus acidophilus
           30SC]
          Length = 432

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 75/313 (23%), Positives = 132/313 (42%), Gaps = 45/313 (14%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYS------------SIVIDVNKNQMTGFKQ 71
           I+R        + L        + +HA    S            +I ID +  Q+   K 
Sbjct: 7   IKRTFISFVAAISLISCGAVFTTPVHADATSSYQADQLNLNVKSAIAIDSDSGQILYAKN 66

Query: 72  -DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKTAATQNPSKLYLKEKTYF 126
            D+    AS+TK++T+Y+  + +++KKL  + ++    P+ K A     S + LK    +
Sbjct: 67  ADKTLPIASMTKLVTVYLTLQAIKNKKLSWDQKVKPTAPIVKVANNTEYSNVPLKMGHSY 126

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           T  Q   A +  SAN  +   G+ I+GS+K F   M  + KK G+++     A GL + N
Sbjct: 127 TIRQLYQATLIESANGAAMLLGQTIAGSQKAFINQMRAQVKKWGIEDAKIYTACGLPNGN 186

Query: 187 --------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN----RIITNHN 228
                            +A+D AI+G  L K+FP+      I    +++      + N N
Sbjct: 187 LGKDAYPGVNKNDENTMSAKDMAIIGQNLIKDFPEVLDTTKIAHLNFKDGNKVTKMANFN 246

Query: 229 KLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQ 278
            +L  +      + +DG+KTG T  +G   + ++ +    ++ VVMG      T   R  
Sbjct: 247 WMLKGLSQYDEAYPVDGLKTGTTDAAGACFIGTVEHSGARLITVVMGARHQDGTDPSRFI 306

Query: 279 KALELITSFLEKK 291
           +  +L+     K 
Sbjct: 307 QTKKLMNFIFNKY 319


>gi|323691411|ref|ZP_08105685.1| hypothetical protein HMPREF9475_00547 [Clostridium symbiosum
           WAL-14673]
 gi|323504554|gb|EGB20342.1| hypothetical protein HMPREF9475_00547 [Clostridium symbiosum
           WAL-14673]
          Length = 513

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 133/302 (44%), Gaps = 36/302 (11%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------IVIDVNKNQ 65
           L   +G +++++   LM  +L + +I+   A   +AKP + +         IV+D++   
Sbjct: 24  LKIIWGKLFMKK---LMSLLLSIIMILAGPAMTSYAKPDWPADTGIQSEAGIVMDMDSKT 80

Query: 66  MTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYL 120
           +   +     + PAS+TK++T  ++ E       +L+  +  S  A         +K  L
Sbjct: 81  VIFGQNIHVQKAPASITKLLTALVVIE-----NANLDDMVTFSDDAIHNVEEGAGNKNAL 135

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           +     T +  +  ++  S+N  + A  E ++GS   F  +M+ K K++G +N+ + N S
Sbjct: 136 EPGDKMTVKDCLYHMLLTSSNQSANALAEHVAGSRDAFVAMMNEKVKELGCENSHFANPS 195

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-------NRIITNHNKLL-- 231
           GL+D  Q+TT  D A++G    +N P   +  S + +R            I   +K+L  
Sbjct: 196 GLNDDTQLTTVYDMALIGTAAYEN-PVLLEIGSAKSYRLPPTANNPDGVTIKMEHKMLTE 254

Query: 232 ---NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
              N        KTG+T  +G  +VT     D  ++AV M   T     Q    L+    
Sbjct: 255 GDPNYYQAAIAGKTGFTSIAGQTLVTYASKDDRKLIAVTMKS-TEFTHYQDTKALLDFGF 313

Query: 289 EK 290
           ++
Sbjct: 314 DR 315


>gi|120402569|ref|YP_952398.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium vanbaalenii
           PYR-1]
 gi|119955387|gb|ABM12392.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium vanbaalenii
           PYR-1]
          Length = 403

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 56/263 (21%), Positives = 105/263 (39%), Gaps = 15/263 (5%)

Query: 37  LSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
             +I       + A     + +V D++   +   +    R+ PAS+ K++T     + + 
Sbjct: 78  CGVITAPGTPPVPADVSAEAWLVADLDSGDVIAARDPHGRHRPASIIKVLTAM---QAIN 134

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
              L L+  IP ++  A Q  +K+ +    +++    +  L+  S ND + A    + G 
Sbjct: 135 D--LPLHKVIPGTEEDAAQEGTKVGVGPGGFYSINDLLHGLLMYSGNDAAHALAMQMGGM 192

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           +      ++  A K+G ++T     SGL      T+A D  +      +N P +    + 
Sbjct: 193 QTA-LNKINALAGKLGARDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQN-PVFTDIVAT 250

Query: 215 RKFRYRNR-----IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM- 268
           R   +  R      I N NKLL       G KTG+T ++G   V +       +VAV++ 
Sbjct: 251 RSSNFPGRDGAGYPIENDNKLLANYPGALGGKTGFTDDAGQTFVGAATRDGRRLVAVLLR 310

Query: 269 GMPTSQERDQKALELITSFLEKK 291
           G        ++A  L+       
Sbjct: 311 GTRQPIAPWEQAARLLDYGFATA 333


>gi|77405145|ref|ZP_00782244.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
           agalactiae H36B]
 gi|77176288|gb|EAO79058.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
           agalactiae H36B]
          Length = 414

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 72/340 (21%), Positives = 146/340 (42%), Gaps = 33/340 (9%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASL 80
           +++++ I  +  +  +  +    A   +A  K+ ++ +D++  ++   K  ++P   ASL
Sbjct: 2   LFLKKIITSILLLSCIFFMPTISAESFNASAKH-ALAVDLDSGKILYEKDANKPAAIASL 60

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGILALI 136
           TK+MT+Y++++ + +  L  NT++ +           + S + L+++  +T +Q + A +
Sbjct: 61  TKIMTVYMVYKEIDNGNLKWNTKVNIXDYPYQLTRESDASNVPLEKR-RYTVKQLVDAAM 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH------------- 183
             SAN  + A  E ISG+E KF   M+ + +K G+ ++   NASGL+             
Sbjct: 120 ISSANSAAIALAEHISGTESKFVDKMTAQLEKWGIHDSHLVNASGLNNSMLGNHIYPKSS 179

Query: 184 -DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNID 238
            +     +ARD AI+   L   +P   K  S    ++   I+ ++N +L  M      I 
Sbjct: 180 QNDENKMSARDIAIVAYHLVNEYPSILKITSKSVAKFDKDIMHSYNYMLPDMPVFRPGIT 239

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM----PTSQERDQKALELITSFLEKK--- 291
           G+KTG T  +G + + +       ++ V+M           R      L+          
Sbjct: 240 GLKTGTTELAGQSFIATSTESGMRLLTVIMHADKADKDKYARFTATNSLLNYITNTYEPN 299

Query: 292 -TLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
             L     ++    S    K+  +I   K      +K + 
Sbjct: 300 LVLAKGAAYKGKEASVRDGKEQSVIAVAKNDLKVVQKKNI 339


>gi|229020609|ref|ZP_04177345.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273]
 gi|228740670|gb|EEL90932.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273]
          Length = 425

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 63/301 (20%), Positives = 135/301 (44%), Gaps = 37/301 (12%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 45  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 104

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 105 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 164

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  IL   +   +P+  +    R   + +  
Sbjct: 165 NATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKTIITKYPEMLEDTKQRFRNFPDNH 224

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 225 PKPIRMENWNWMLPGAAFAYEGSDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 284

Query: 275 ERDQKALELITSF---LEKKTLKHQQTHR------KDNLSSTSLKKSLMIKKLKRTYSQF 325
           ER  ++  LI       EK+ LK  + ++      K++  + + +K +++   K   + +
Sbjct: 285 ERFTESRALIEYGFNNFEKQKLKVDKNNKISVVKGKEDYVTVAPEKEVIVVTAKGNKAPY 344

Query: 326 K 326
           K
Sbjct: 345 K 345


>gi|163791201|ref|ZP_02185618.1| hypothetical protein CAT7_03879 [Carnobacterium sp. AT7]
 gi|159873532|gb|EDP67619.1| hypothetical protein CAT7_03879 [Carnobacterium sp. AT7]
          Length = 440

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 80/337 (23%), Positives = 140/337 (41%), Gaps = 45/337 (13%)

Query: 25  QRNIQLMGKILFLSII--MISMASELHAK-------PKYSSIVIDVNKNQMTGFKQ-DEP 74
           ++   +   +L L     +ISM + + A           ++ +I+    ++   +  DE 
Sbjct: 5   KKISTVFVTMLLLGTFSPLISMDTTVSAATIEQPKVEAAAAFIIEPTTGKVLLNQNGDEK 64

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQ 130
              AS+TKM+T YI+ E +++  L  + QI +S+ A         S + L+    ++ E+
Sbjct: 65  LGIASMTKMITEYILLETIKNGDLAWDDQIEISEYAHEISQNYELSNVPLRIDDTYSVEE 124

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH------- 183
              A+   SAN  + A  E I+G EK F  +M  K +  G+ N    N +GL        
Sbjct: 125 LYQAMAIYSANGATIALAEHIAGDEKAFVDMMHEKVESWGITNYEIYNTTGLSNFDLNGN 184

Query: 184 -------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL 231
                  +     TAR  AI+   L  +FP   K  SI K  +R        +TN N +L
Sbjct: 185 IYPGSTENSENSMTARGMAIIAQHLITDFPDVLKTSSISKKTFREGTSDAIEMTNFNWML 244

Query: 232 NKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ----ERDQKALEL 283
             +     N+DG+KTG T  +G ++  +   +   I+ +VM     Q    +R  +  ++
Sbjct: 245 PGLDHERENVDGLKTGTTDFAGASMTGTAEQEGMRIITIVMNATNGQKDLGKRFVETDKM 304

Query: 284 ITSFLEK----KTLKHQQTHRKDNLSSTSLKKSLMIK 316
           +    E     +  K  QT    + +     K   +K
Sbjct: 305 MDWAFENWSKVQVFKEGQTLDNVDPAKVDKGKKDTVK 341


>gi|42518607|ref|NP_964537.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus johnsonii NCC
           533]
 gi|41582892|gb|AAS08503.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus johnsonii NCC
           533]
          Length = 308

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 112/257 (43%), Gaps = 22/257 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++ I+         K        AS+TK++T+Y+  + ++ KK+  +T +  ++     
Sbjct: 52  AAVAINAKDGSTIYAKNANQSLPIASMTKLLTVYLTLQAIKEKKISWDTTVTPTQEIVDL 111

Query: 114 NP----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 + + L+    +T  +   A + +SAN+ +      +SGSE  F   M  +A+K 
Sbjct: 112 GSNPDYASVPLRLGQKYTVRELYDAALIKSANNAARLLAIAVSGSETNFLNQMRQQARKW 171

Query: 170 GMQNTIYKNASGLHDK-----------NQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
            + N  +    GL +K               +A D AI+   L  N+P+      + +  
Sbjct: 172 KLNNAKFVTVDGLPEKKKNFLGMTTTVENKMSANDMAIVARKLITNYPEILNTTKLARAY 231

Query: 219 YRNRIITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           ++N ++TN NK+LN +        +DG+KTG T  +G     ++      ++ V++G   
Sbjct: 232 FQNTLMTNSNKMLNGLSYYDSTFPVDGLKTGTTDGAGSCFTCTVNKNGKRVITVILGAEN 291

Query: 273 SQERDQKALELITSFLE 289
             ER  +  +L++    
Sbjct: 292 DNERFVETKKLLSYCFN 308


>gi|301054094|ref|YP_003792305.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis CI]
 gi|300376263|gb|ADK05167.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 327

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 131/284 (46%), Gaps = 16/284 (5%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYI 88
           ++  ++ L   +      + AK   S+I+ID N  ++   K +E     A+L+K+MT YI
Sbjct: 4   VITALIVLYFYLYVNGPIIQAK---SAILIDANSGEVVYKKNEETSIQSATLSKLMTEYI 60

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           + E L    + L+  + +S        S + +  K   T    + AL+    N  + A  
Sbjct: 61  VLEQLDKGNIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHALLLTGNNRSTLALA 120

Query: 149 EFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDKNQI---TTARDQAILGILLRKN 204
           E I+G+E  F  LM+ KAK++ +   + + NA+G+++       TTA +   L   L  +
Sbjct: 121 EHIAGNEDNFTQLMNEKAKQLKLSQPSPFLNATGMNNGTNKLSTTTAIEVGKLATRLVTD 180

Query: 205 FPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGYTRNSGFNIVTSL 256
           FP       +    F +++  + N NK++       K+  +DG++T ++ NS ++ V++ 
Sbjct: 181 FPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKLQGVDGLQTSFSTNSNYSFVSTA 240

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           +  D  +++V++   +      +  +L+    +  +    Q  +
Sbjct: 241 KRGDTRLISVILDADSENSTFIETKKLLQYGFDPSSYSALQAFK 284


>gi|260890742|ref|ZP_05902005.1| putative D-alanyl-D-alanine carboxypeptidase [Leptotrichia
           hofstadii F0254]
 gi|260859620|gb|EEX74120.1| putative D-alanyl-D-alanine carboxypeptidase [Leptotrichia
           hofstadii F0254]
          Length = 423

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/313 (22%), Positives = 144/313 (46%), Gaps = 13/313 (4%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMM 84
           +R+ +++  + FL++  +S AS        S ++ D+N N +        R  AS+TK+M
Sbjct: 20  RRSKKIIMSMAFLTVSALSFASGEDYYDYKSLLIGDINGNIIKEDNSSAVRPLASVTKIM 79

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T  +  + +++ ++    ++ VS  AA+  P  + L     +T    + A I +S+N+ +
Sbjct: 80  TSILTLDKIKNGQISYEDKVTVSAKAASV-PYGIKLTAGKQYTVRDLLKATIIKSSNNAA 138

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT-----ARDQAILGI 199
            A  E++ G    F   M+ KA+  G+ +  Y +  GL      +      A+D   L  
Sbjct: 139 YALAEYVGGDVSNFVHSMNEKARSYGLNSLRYCSPHGLPPSYTGSCMDQGNAKDLYKLAQ 198

Query: 200 LLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
           +  K++ +Y  +   +       N  +T+ N LL  +  +DGIKTGY   +G NIV +  
Sbjct: 199 ITLKDYSEYLNFSKNKTDYVDNGNTKVTSTNALLGNVLGVDGIKTGYHDAAGSNIVLTAN 258

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFL-----EKKTLKHQQTHRKDNLSSTSLKKS 312
             +D ++A+++G   +++R+    + I  +       K ++K+      ++  +T   ++
Sbjct: 259 RGNDRMIAIILGSNRAKDRNAIGAKEINDYYANGYARKASVKNNSLRPIESTYNTDNTET 318

Query: 313 LMIKKLKRTYSQF 325
               K      QF
Sbjct: 319 SKNSKGNSKVDQF 331


>gi|295425352|ref|ZP_06818055.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus
           amylolyticus DSM 11664]
 gi|295065128|gb|EFG56033.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus
           amylolyticus DSM 11664]
          Length = 432

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 72/317 (22%), Positives = 135/317 (42%), Gaps = 48/317 (15%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYS-------------SIVIDVNKNQMTG 68
           I+ +  + ++  +   S +    A+ ++A    S             ++ ID    Q+  
Sbjct: 6   IFKKAAMIIVAAVSLCSFM--GFAAPVNASSTISSYRQDELNLNVKSALAIDSKTGQILY 63

Query: 69  FKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKTAATQNPSKLYLKEK 123
            K  D+    AS+TK++T+Y+  + +++K++   T++     + K A     S + LK+ 
Sbjct: 64  AKNADKTLPIASMTKLVTVYLTLQAIKNKQISWTTKVKPTATIVKVANNSEYSNVPLKKG 123

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
             +T +Q   A +  SAN  +    + +SGS+  F   M  + KK G+ +       GL 
Sbjct: 124 HSYTIKQLYQATLIESANGAAMCLAQAVSGSQVAFVKKMRAQVKKWGINDAKIYTVCGLP 183

Query: 184 DKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI----IT 225
           + N                 +A+D AI+G  L  +FP   K  SI K  ++++     + 
Sbjct: 184 NGNLGSDAYPGVSKNAENTMSAKDMAIIGQRLINDFPAVLKTTSIAKLAFKDQGKTTQME 243

Query: 226 NHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQE 275
           N N +L  +        +DG+KTG T  +G   + +++     I+ VVMG      T   
Sbjct: 244 NFNWMLKGLSQYDANLKVDGLKTGTTDAAGACFIGTIKKNGSRIITVVMGARHQDGTDPS 303

Query: 276 RDQKALELITSFLEKKT 292
           R  +  +L+     K T
Sbjct: 304 RFVQTKKLMNWIFSKYT 320


>gi|315038949|ref|YP_004032517.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus amylovorus GRL
           1112]
 gi|312277082|gb|ADQ59722.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus amylovorus GRL
           1112]
 gi|327184084|gb|AEA32531.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus amylovorus GRL
           1118]
          Length = 432

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 75/313 (23%), Positives = 133/313 (42%), Gaps = 45/313 (14%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYS------------SIVIDVNKNQMTGFKQ 71
           I+R        + L        + +HA    S            +I ID +  Q+   K 
Sbjct: 7   IKRTFISFVAAISLISCGAVFTTPVHADATSSYQADQLNLNVKSAIAIDSDSGQILYAKN 66

Query: 72  -DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKTAATQNPSKLYLKEKTYF 126
            D+    AS+TK++T+Y+  + +++KKL  + ++    P+ K A     S + LK    +
Sbjct: 67  ADKTLPIASMTKLVTVYLTLQAIKNKKLSWDQKVKPTAPIVKVANNTEYSNVPLKMGHSY 126

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           T  Q   A +  SAN  +   G+ I+GS+K F   M  + KK G+++     A GL + N
Sbjct: 127 TIRQLYQATLIESANGAAMLLGQTIAGSQKAFINQMRAQVKKWGIEDAKIYTACGLPNGN 186

Query: 187 --------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN----RIITNHN 228
                            +A+D AI+G  L K+FP+      I    +++      + N N
Sbjct: 187 LGKDAYPGVNKNDENTMSAKDMAIIGQNLIKDFPEVLDTTKIAHLNFKDGNKVTKMANFN 246

Query: 229 KLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQ 278
            +L  +      + +DG+KTG T  +G   + ++ +    ++ VVMG      T   R  
Sbjct: 247 WMLKGLSQYDEAYPVDGLKTGTTDAAGACFIGTVEHSGARLITVVMGARHQDGTDPSRFI 306

Query: 279 KALELITSFLEKK 291
           +  +L+    +K 
Sbjct: 307 QTKKLMNFIFDKY 319


>gi|302337982|ref|YP_003803188.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635167|gb|ADK80594.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Spirochaeta
           smaragdinae DSM 11293]
          Length = 434

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 66/306 (21%), Positives = 128/306 (41%), Gaps = 26/306 (8%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A  +      S+++ID     +   K  DE   PAS+TK+++L++I+  ++  +L ++ +
Sbjct: 63  AGPVPELSCRSAVLIDDETGTLLFVKHGDEVIPPASMTKLVSLHLIYREIEEGRLSIDQE 122

Query: 104 IPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           I V   A    A    S ++L+          +  L   S ND +    + I+GS   + 
Sbjct: 123 IIVPDFADFRSAPPRSSLMFLQAGQSVRLIDLMRGLALPSGNDAAVLVADLIAGSTPAYV 182

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK-YFSIRKFR 218
            +M+++ +++G  +  ++++SG   ++   TA D A          P+  K   S+  F 
Sbjct: 183 AMMNDEMRRLGFSSIFFEDSSGYS-EHNRATALDFARFARFYVDTHPESLKELHSLTSFS 241

Query: 219 YRNR-------------IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           Y                   NHN L+ +   +DG+KTGY   SG+N+  +   +   ++A
Sbjct: 242 YPKTENENGVKAVYGSVTQPNHNSLVGRHPWVDGLKTGYIDESGYNVALTAETRGRRLIA 301

Query: 266 VVMGMPTSQERDQKA------LELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
           V+MG P    RD           L++    + T+      +    S    K+  +   + 
Sbjct: 302 VLMGGPGENSRDGDLYRVIDGTNLLSYGFYRFTVIIPDLPKLPPFSVIGGKERSVEVAVP 361

Query: 320 RTYSQF 325
              +Q 
Sbjct: 362 LPDAQL 367


>gi|306827400|ref|ZP_07460687.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pyogenes
           ATCC 10782]
 gi|304430547|gb|EFM33569.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pyogenes
           ATCC 10782]
          Length = 442

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/321 (21%), Positives = 142/321 (44%), Gaps = 30/321 (9%)

Query: 13  TFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD 72
             +      I I+R + L   +L  S    ++ +         +IV++ +  ++   K  
Sbjct: 22  FVIIVTMKDIMIKRWVILFFMVLTCSGFGKTVLAADFQVGAEHAIVVEADSGRVLYEKDA 81

Query: 73  E-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           + P   ASLTK++T Y++ + ++S +L L+ Q+ +S  A      ++ S +   +K  ++
Sbjct: 82  KTPDAIASLTKLVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPF-DKKTYS 140

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-- 185
            +  + A +  S+N  + A  E ++GSE  F   M  +    G+ +    NASGL ++  
Sbjct: 141 VQDLLTATLVASSNSAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVL 200

Query: 186 ------------NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +A+D A++ + L ++FP+  +     +  +    I + N+LL  
Sbjct: 201 KDNRYPGSALEEENTLSAQDVAVVTMHLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPG 260

Query: 234 MH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS----QERDQKALELIT 285
           M      +DG+KTG T  +G  +V +       ++ V++    S      R ++A  L+ 
Sbjct: 261 MAKGRAGVDGLKTGTTDLAGHCLVVTSIENGMRVITVILNADGSDKNQNTRFEQANRLLD 320

Query: 286 SFLEKKTLKHQQTHRKDNLSS 306
                +T   ++  +K +L S
Sbjct: 321 YVA--RTYCRRKILKKGSLVS 339


>gi|212695505|ref|ZP_03303633.1| hypothetical protein ANHYDRO_00021 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677505|gb|EEB37112.1| hypothetical protein ANHYDRO_00021 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 408

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 142/314 (45%), Gaps = 29/314 (9%)

Query: 29  QLMGKILFLSIIMISMASELHAK----------PKYSSIVIDVNKNQMTGFKQDEPRYP- 77
            L+  ILFL   +   A E  AK             + ++ +     +   K  +  YP 
Sbjct: 9   ALILAILFLFSPLNVFADESIAKEGDNVVGADKDVRAYLIGNQESGDIFYQKNADKTYPI 68

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP---SKLYLKEKTYFTTEQGILA 134
           AS++K+MT  +  E + S K+  +T++  +K A        S L +KE   +T ++ I  
Sbjct: 69  ASMSKLMTFLLTREAIDSGKISYDTKVKGTKEAEDLTGPEYSSLGIKEGEEYTIKELITG 128

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL---HDKNQITTA 191
           LI  S ND +      ISGSE  FA  M+ KA+++ +++  Y NASG+    D    ++A
Sbjct: 129 LIVVSGNDCANLLASKISGSEDNFAKEMNKKAQELNLKSQKYYNASGVNTEDDTQNSSSA 188

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT--NHNKLLNKMHNIDGIKTGYTRNSG 249
           +D   L  ++ K +P   +Y ++       + I   +   L   +  +DG+KTG T  +G
Sbjct: 189 KDLFELTRIILKKYPDILEYSNMDGIDDNKKDIHKKSTIPLKGDIKGVDGLKTGTTEEAG 248

Query: 250 FNIVTSLR------YKDDPIVAVVMGMPTSQERDQKALELI---TSFLEKKTLKHQQTHR 300
             ++T++         D   +++VMG      RD    +LI   + +   K L  +QT  
Sbjct: 249 SCLITTIDMGKFDPKNDYRAISIVMGAKDHPTRDAAMTDLIYYVSRYFNYKKLADKQTP- 307

Query: 301 KDNLSSTSLKKSLM 314
            D +   S+K+  +
Sbjct: 308 SDFVKVNSVKEGYV 321


>gi|257126624|ref|YP_003164738.1| serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia buccalis
           C-1013-b]
 gi|257050563|gb|ACV39747.1| Serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia buccalis
           C-1013-b]
          Length = 422

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 65/286 (22%), Positives = 136/286 (47%), Gaps = 8/286 (2%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYII 89
           ++  + FL++  +S A     +   + ++ DVN N +        R  AS+TK+MT  + 
Sbjct: 12  VIFSMAFLALSSLSFADGADYRDYKALLIGDVNGNIIKEDNSLAVRPLASVTKIMTSILT 71

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            + ++S  +  + ++ VS  AA+  P  + L     +T    + A I +S+N+ + A  E
Sbjct: 72  LDKIKSGMISYDDKVTVSSKAASV-PYGIKLTAGKQYTVRDLLKATIIKSSNNAAYALAE 130

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT-----ARDQAILGILLRKN 204
           ++ G+   F   M+ KA+  G+++  Y +  GL      +      A+D   L  +  K+
Sbjct: 131 YVGGNVPNFVQSMNEKARSYGLESLRYCSPHGLPPSYTGSCMDQGNAKDLYKLAQITVKD 190

Query: 205 FPQYYKYFSIRK--FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           + +Y  +   +       N  +T+ N LL  +  +DGIKTGY   +G NIV +     + 
Sbjct: 191 YSEYLNFSKNKTDYVDNGNTKVTSTNSLLGNVLGVDGIKTGYHNAAGSNIVLTADRGGER 250

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
           ++A+++G   +++R+    + I  +      +  + +  +N++S +
Sbjct: 251 MIAIILGSNRAKDRNAIGTKEINDYYANGYARKNKNYNTNNVASAT 296


>gi|269797345|ref|YP_003311245.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Veillonella
           parvula DSM 2008]
 gi|269093974|gb|ACZ23965.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Veillonella
           parvula DSM 2008]
          Length = 285

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/274 (25%), Positives = 125/274 (45%), Gaps = 20/274 (7%)

Query: 29  QLMGKILFLSIIMISM--ASELHAKPKY----SSIVIDVNKNQMTGFKQDEP-RYPASLT 81
           +L+  I F+ I+ I    A   +  P      + ++ID +  ++   K  +   +PAS T
Sbjct: 14  KLVLAITFIGIVFIGAGVAQAAYITPPSTIGEAVVLIDADTKEILFAKNPDKWMHPASTT 73

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           KM+TL    E    K   L+    +S  A +   S L ++     T E  +  ++  S N
Sbjct: 74  KMVTLLTALEL---KGTQLDELATISSYATSMEESNLGVRVGDQITLEGVLEGMMVASGN 130

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D +    E +SGS  KFA  M+  A K G +N+++ N  GL  K   +TARD A++    
Sbjct: 131 DAAVVVAENVSGSVDKFAKDMTRIAAKAGAKNSVFLNPHGLTQKGHHSTARDLAMIAAYG 190

Query: 202 RKNFPQYYKYFSIRKFR--YRNR---IITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTS 255
            K +  +    +   ++  Y+NR    I   N  + NK    +G+KTG+T  +G  ++ S
Sbjct: 191 MK-YQMFRDKVANDYYKVPYQNRAPETIRTTNHFIRNKYPGANGLKTGFTNAAGECLIAS 249

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
              K   ++ V++       R ++A++ +    +
Sbjct: 250 ATRKGHTMIVVML---NDDNRWEEAVQFLDYGFK 280


>gi|322392110|ref|ZP_08065572.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus peroris
           ATCC 700780]
 gi|321145010|gb|EFX40409.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus peroris
           ATCC 700780]
          Length = 413

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 67/315 (21%), Positives = 134/315 (42%), Gaps = 32/315 (10%)

Query: 52  PKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P   +I ++    ++   K   +P   AS++K++T+Y+++E L   K+ L+T + +S   
Sbjct: 28  PAKHAIAVEATTGKILYEKDATQPVEIASISKLLTVYLVYEALDQGKITLSTPVEISDYP 87

Query: 111 ----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
                    S + ++ + Y T E+ + A +  SAN  + A  E I+GSEK F  +M  K 
Sbjct: 88  YKLTTNSEASNVPMEARNY-TVEELLEATLVSSANSAAIALAEKIAGSEKDFVDMMKAKL 146

Query: 167 KKIGMQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYF 212
            + G+Q+    N++GL+              D     +A D A++   L   +PQ  +  
Sbjct: 147 LEWGIQDATLVNSTGLNNETLGNNIYPGSKKDDENKLSAYDVAVVARNLILKYPQVLEIT 206

Query: 213 SIRKFRYRNRIITNHNKLLNKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 +    I + N +L  +      +DG+KTG T  +G + V +   K   I+ VV+
Sbjct: 207 KKPSSTFAGMTIHSTNYMLEGLPAYRGGVDGLKTGTTDKAGASFVGTTVEKGMRIITVVL 266

Query: 269 GMPTSQ----ERDQKALELIT----SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKR 320
                      R      L+     +F  +  +   ++++         K++ +    K 
Sbjct: 267 NADNQNTNPYARFTATSALLDYISSNFALQTIVNQGESYQDSKSPVLDGKQNTVAAVAKE 326

Query: 321 TYSQFKKIDAKAHST 335
                +++ ++A S+
Sbjct: 327 DIKIVQRLGSRAQSS 341


>gi|323483146|ref|ZP_08088538.1| D-alanyl-D-alanine carboxypeptidase [Clostridium symbiosum
           WAL-14163]
 gi|323403566|gb|EGA95872.1| D-alanyl-D-alanine carboxypeptidase [Clostridium symbiosum
           WAL-14163]
          Length = 512

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 133/302 (44%), Gaps = 36/302 (11%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------IVIDVNKNQ 65
           L   +G +++++   LM  +L + +I+   A   +AKP + +         IV+D++   
Sbjct: 24  LKIIWGKLFMKK---LMSLLLSIIMILAGPAMTSYAKPDWPADTGIQSEAGIVMDMDSKT 80

Query: 66  MTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYL 120
           +   +     + PAS+TK++T  ++ E       +L+  +  S  A         +K  L
Sbjct: 81  VIFGQNIHVQKAPASITKLLTALVVIE-----NANLDDMVTFSDDAIHNVEEGAGNKNAL 135

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           +     T +  +  ++  S+N  + A  E ++GS   F  +M+ K K++G +N+ + N S
Sbjct: 136 EPGDKMTVKDCLYHMLLTSSNQSANALAEHVAGSRDAFVAMMNEKVKELGCENSHFANPS 195

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-------NRIITNHNKLL-- 231
           GL+D  Q+TT  D A++G    +N P   +  S + +R            I   +K+L  
Sbjct: 196 GLNDDTQLTTVYDMALIGTAAYEN-PVLLEIGSAKSYRLPPTANNPDGVTIKMEHKMLTE 254

Query: 232 ---NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
              N        KTG+T  +G  +VT     D  ++AV M   T     Q    L+    
Sbjct: 255 GDPNYYQAAIAGKTGFTSIAGQTLVTYASKDDRKLIAVTMKS-TEFTHYQDTKALLDFGF 313

Query: 289 EK 290
           ++
Sbjct: 314 DR 315


>gi|75758555|ref|ZP_00738675.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74493989|gb|EAO57085.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 434

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 59/298 (19%), Positives = 130/298 (43%), Gaps = 28/298 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 54  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 113

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 114 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKVGLKKYKFV 173

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           N++GL++ +                 +ARD  IL   +   +P+  +    R   + +  
Sbjct: 174 NSTGLNNADLKGKHPEGTDPTGENSMSARDMGILAKTIITKYPEMLEDTKQRFRNFPDNH 233

Query: 222 ---RIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 234 PKPIRMENWNWMLPGAAFSYDGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 293

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
           ER  ++ ELI         +  + ++ + +S    K+  +    ++  +   K  +K 
Sbjct: 294 ERFTESRELIEHGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKE 351


>gi|328464600|gb|EGF35965.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus helveticus MTCC
           5463]
          Length = 431

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 83/367 (22%), Positives = 151/367 (41%), Gaps = 52/367 (14%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPK---------------YSSIVIDVNKNQM 66
           ++  + I+     L   I ++S  +   A  K                S+I ID N  Q+
Sbjct: 1   MFFSKKIKRAVISLVALISLVSCGATFSAPAKADVANYQTDQVKLNVKSAIAIDSNSGQV 60

Query: 67  TGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKTAATQNPSKLYLK 121
              K  D+    AS+TK+MT+Y+    ++++KL  + ++     + K A     S + LK
Sbjct: 61  LYAKNADKTLPIASMTKLMTVYLTLNAIKNQKLAWDQKVKPTASIVKVANNAEYSNVPLK 120

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
               +T +Q   A +  SAN  +   G+ I+GS+K F   M ++ KK G+++     A G
Sbjct: 121 MGHSYTIKQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRSQVKKWGIKDAKIYTACG 180

Query: 182 LHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT-- 225
           L + N                 +A+D AI+G  L ++FP+      +    ++++  T  
Sbjct: 181 LPNGNVGKDAYPGVNKNAENSMSAKDMAIVGQNLIQDFPEVLDTTKLAHLDFKDQGHTTK 240

Query: 226 --NHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TS 273
             N N +L      ++ + +DG+KTG T  +G   + ++ +    ++ VVMG      T 
Sbjct: 241 MANFNWMLKGLSQYDQTYPVDGLKTGTTDAAGACFIGTVNHAGARLITVVMGARHKDGTD 300

Query: 274 QERDQKALELITSFLEKK---TLKHQ-QTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKID 329
             R  +  +L+     K    T     Q     N+  T    +     LK   + +   D
Sbjct: 301 PARFMQTKKLMNYVFTKYRPVTFNAGSQMAGVKNIKVTDGDNATTNLGLKEKTTIWDPAD 360

Query: 330 AKAHSTQ 336
            K    +
Sbjct: 361 GKTLVAK 367


>gi|260103243|ref|ZP_05753480.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus helveticus
           DSM 20075]
 gi|111610195|gb|ABH11586.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus helveticus
           CNRZ32]
 gi|260082956|gb|EEW67076.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus helveticus
           DSM 20075]
          Length = 431

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 83/367 (22%), Positives = 150/367 (40%), Gaps = 52/367 (14%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPK---------------YSSIVIDVNKNQM 66
           ++  + I+     L   I ++S  +   A  K                S+I ID N  Q+
Sbjct: 1   MFFSKKIKRAVISLVALISLVSCGATFSAPAKADVANYQTDQVKLNVKSAIAIDSNSGQV 60

Query: 67  TGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKTAATQNPSKLYLK 121
              K  D+    AS+TK+MT+Y+    ++++KL  + ++     + K A     S + LK
Sbjct: 61  LYAKNADKTLPIASMTKLMTVYLTLNAIKNQKLAWDQKVKPTASIVKVANNAEYSNVPLK 120

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
               +T +Q   A +  SAN  +   G+ I+GS+K F   M ++ KK G+++     A G
Sbjct: 121 MGHSYTIKQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRSQVKKWGIKDAKIYTACG 180

Query: 182 LHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT-- 225
           L + N                 +A+D AI+G  L ++FP+      +    ++++  T  
Sbjct: 181 LPNGNVGKDAYPGVNKNAENSMSAKDMAIVGQNLIQDFPEVLDTTKLAHLDFKDQGHTTK 240

Query: 226 --NHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TS 273
             N N +L  +      + +DG+KTG T  +G   + ++ +    ++ VVMG      T 
Sbjct: 241 MANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVNHAGARLITVVMGARHKDGTD 300

Query: 274 QERDQKALELITSFLEKK---TLKHQ-QTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKID 329
             R  +  +L+     K    T     Q     N+  T    +     LK   + +   D
Sbjct: 301 PARFMQTKKLMNYVFTKYRPVTFNAGSQMAGVKNIKVTDGDNATTNLGLKEKTTIWDPAD 360

Query: 330 AKAHSTQ 336
            K    +
Sbjct: 361 GKTLVAK 367


>gi|71903459|ref|YP_280262.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS6180]
 gi|71802554|gb|AAX71907.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS6180]
          Length = 451

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 69/322 (21%), Positives = 141/322 (43%), Gaps = 32/322 (9%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE- 73
           +      I I+R + L   +L  S    ++ +         +IV++ +  ++   K  + 
Sbjct: 33  IIVTMKDIMIKRWVILFFMVLTCSGFGKTVLAADFQVGAEHAIVVEADSGRVLYEKDAKT 92

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTE 129
           P   ASLTK++T Y++ + ++S +L L+ Q+ +S  A      ++ S +   +K  ++ +
Sbjct: 93  PDAIASLTKLVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPF-DKKTYSVQ 151

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK---- 185
             + A +  S+N  + A  E ++GSE  F   M  +    G+ +    NASGL ++    
Sbjct: 152 DLLTATLVASSNSAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKD 211

Query: 186 ----------NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
                         +A+D A++ + L ++FP+  +     +  +    I + N+LL  M 
Sbjct: 212 NRYPGSALEEENTLSAQDVAVVTMHLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMA 271

Query: 236 ----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS----QERDQKALELITS- 286
                +DG+KTG T  +G  +V +       ++ V++    S      R ++A  L+   
Sbjct: 272 KGRAGVDGLKTGTTDLAGHCLVVTSIENGMRVITVILNADGSDKNQNTRFEQANRLLDYV 331

Query: 287 ---FLEKKTLKHQQTHRKDNLS 305
              +  +K LK      + +L 
Sbjct: 332 DRTYCRRKILKKGSLVLERSLP 353


>gi|227876929|ref|ZP_03995025.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus crispatus
           JV-V01]
 gi|256850179|ref|ZP_05555609.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus
           MV-1A-US]
 gi|227863486|gb|EEJ70909.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus crispatus
           JV-V01]
 gi|256713151|gb|EEU28142.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus
           MV-1A-US]
          Length = 433

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/270 (25%), Positives = 122/270 (45%), Gaps = 33/270 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKT 109
           S+I ID +  Q+   K        AS+TK++T+Y+  + +++ KL  + ++    P+ K 
Sbjct: 51  SAIAIDSDSGQILYAKNATKTLPIASMTKLVTVYLTLQAIKNHKLSWDQKVKPTAPIVKV 110

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A     S + LK    +T  Q   A +  SAN  +   G+ I+GS+K F   M  + KK 
Sbjct: 111 ANNAEYSNVPLKLGHSYTIRQLYQATLIESANGAAMLLGQTIAGSQKAFVDQMRAQVKKW 170

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++T    A GL + N                 +A+D AI+G  L K+FP+      + 
Sbjct: 171 GIEDTKIYTACGLPNGNVGKDAYPGVNKNAENSMSAKDMAIVGQNLIKDFPEVLDTTKLA 230

Query: 216 KFRYRN----RIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              +++      + N N +L  +      + +DG+KTG T  +G   + ++++    ++ 
Sbjct: 231 HLDFKDAGHATKMANFNWMLKGLSQYDPAYPVDGLKTGTTDAAGACFIGTVQHNGARLIT 290

Query: 266 VVMGMP----TSQERDQKALELITSFLEKK 291
           VVMG      T   R  +  +L+     K 
Sbjct: 291 VVMGARHRDGTDPARFMQTKKLMNFIFTKY 320


>gi|284043333|ref|YP_003393673.1| serine-type D-Ala-D-Ala carboxypeptidase [Conexibacter woesei DSM
           14684]
 gi|283947554|gb|ADB50298.1| Serine-type D-Ala-D-Ala carboxypeptidase [Conexibacter woesei DSM
           14684]
          Length = 434

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 82/289 (28%), Positives = 126/289 (43%), Gaps = 26/289 (8%)

Query: 49  HAKPKYS---SIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            A PK S   + V +V+  Q        + R  AS TK+MT  +  E L   ++      
Sbjct: 52  PAPPKLSAPAAAVFEVSSGQPLYGVDAGDRRLIASTTKIMTALVAVEKLPLGRV-----C 106

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
                AAT   +++ L++    +    + AL+  SAND +       +GS   F  LM+ 
Sbjct: 107 TAPAYAATPAETQIGLRQGERMSVRDLLRALMLPSANDAAATLAVCAAGSRGAFIDLMNA 166

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--- 221
           KA+++ + +T +    GL      +TA D A LGI LR+  P   +   +R    R    
Sbjct: 167 KARELRLADTHFATPVGLDSPANYSTAADLARLGIALRQK-PFLARTVDLRSAVLRTGAF 225

Query: 222 -RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
            R + N N L+  +  +DG+KTG+T  +G+ +V S        VA VMG P+   RD  A
Sbjct: 226 PRTVVNRNGLVQSVPWVDGVKTGHTNAAGYLLVASSTRDGLSFVAAVMGTPSESARDADA 285

Query: 281 LELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKID 329
           L L+             THR     +T +K   +  + K  Y    KID
Sbjct: 286 LALLRWAY--------ATHR----IATPVKSGAVFARAKLKYRPEDKID 322


>gi|50914161|ref|YP_060133.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS10394]
 gi|50903235|gb|AAT86950.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS10394]
          Length = 415

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 71/316 (22%), Positives = 145/316 (45%), Gaps = 32/316 (10%)

Query: 19  YGSIYIQRNIQLMGKILFLS-IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
              I I+R   L   +L  S +  I +A++     ++ +IV++ +  ++   K  + P  
Sbjct: 1   MKDIMIKRWAILFFVVLTCSGLSKIVLAADFQVGAEH-AIVVEADSGRVLYEKDAKTPDA 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGI 132
            ASLTK++T Y++ + ++S +L L+ Q+ +S  A      ++ S +   +K  ++ +  +
Sbjct: 60  IASLTKLVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPF-DKKTYSVQDLL 118

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-------- 184
            A +  S+N  + A  E ++GSE  F   M  +    G+ +    NASGL +        
Sbjct: 119 TATLVASSNSAAIALAEKVAGSEPHFVNQMREQLSHWGITSGKILNASGLPNEVLKDHRY 178

Query: 185 ------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM---- 234
                 +    +A+D A++ + L ++FP+  +     +  +    I + N+LL  M    
Sbjct: 179 PGSALEEENTLSAQDVAVVTMRLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMAKGR 238

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS----QERDQKALELITSFLEK 290
             +DG+KTG T  +G  +V +       ++ V++    S      R ++A  L+      
Sbjct: 239 AGVDGLKTGTTDLAGHCLVVTSIENGMRVITVILNADGSDKNQNTRFEQANRLLDYVA-- 296

Query: 291 KTLKHQQTHRKDNLSS 306
           +T   ++  +K +L S
Sbjct: 297 RTYCRRKILKKGSLVS 312


>gi|89894346|ref|YP_517833.1| hypothetical protein DSY1600 [Desulfitobacterium hafniense Y51]
 gi|89333794|dbj|BAE83389.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 364

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 103/225 (45%), Gaps = 16/225 (7%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQG 131
             PAS TK+MT  +  E       +    +  S+T     T   +++YL+     + E  
Sbjct: 1   MAPASTTKIMTGLLGIELG-----NPEDIVTASETMLDYTTVYGTRIYLEPGEQLSLEDM 55

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + AL+  SAND + A  E ISG+   F  LM+ +A  +G++NT +KN SGL+++  +TTA
Sbjct: 56  LYALLLNSANDAAVAIAEHISGNTSAFVSLMNQRAADLGLKNTTFKNPSGLNEEGHLTTA 115

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYR------NRIITNHNKLLNKMHNIDGIKTGYT 245
            D A +      N P +  Y   +              + N NKLL +   I G+KTGYT
Sbjct: 116 HDLARIAQAAYAN-PVFRDYIKTKSHVIPRAKENVPIEMINENKLLWRDDTITGMKTGYT 174

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
             +   +V S       ++ V++  P  +E       L+    E+
Sbjct: 175 SVAQNCLVASASRDGRDVIGVILKSP-GREIYTDMQALLDYGFEQ 218


>gi|323341544|ref|ZP_08081782.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus ruminis
           ATCC 25644]
 gi|323091028|gb|EFZ33662.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus ruminis
           ATCC 25644]
          Length = 448

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 63/305 (20%), Positives = 129/305 (42%), Gaps = 42/305 (13%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI-------PV 106
           ++I +D    Q+   K  E   P AS++K+MT+Y++ + +++ KL  N +I        V
Sbjct: 55  AAIAVDAKTGQILYAKNAEQALPVASMSKLMTVYLVLQAIKNGKLSWNQEILPDAASQKV 114

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
           S+       S + LK    +T +    A +  SAN  + A    + G+ K F  +M  +A
Sbjct: 115 SQ---DTQLSNVPLKADHKYTVKALYQATLIYSANGAAMALANAVGGTHKNFIDMMRKEA 171

Query: 167 KKIGMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYF 212
           +K+G+ +     A+GL               +     +A+D AI+   L +++P+  +  
Sbjct: 172 RKMGINDAEIYTANGLTNDEVFDAKYPGASDNAENKFSAKDMAIISQRLIEDYPEVLETT 231

Query: 213 SIRKFRYRN----RIITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDP 262
            I + ++ N      + N N +L  +        +DG+KTG + ++G     ++      
Sbjct: 232 KITRMKFNNGTDETTMENWNWMLPGLAKAYSELPVDGLKTGTSDSAGACFTGTVNKDGHR 291

Query: 263 IVAVVMGMPTSQE----RDQKALELITSFLEK---KTLKHQQTHRKDNLSSTSLKKSLMI 315
           ++ VV+G     +    R  +  +L++        +T+K  +  +          K L +
Sbjct: 292 LITVVLGAKHDSQEDLSRFVETQKLMSYCYNNYSYETIKAGKAFKNAASLPVYHGKDLKV 351

Query: 316 KKLKR 320
               +
Sbjct: 352 AVSSK 356


>gi|293375502|ref|ZP_06621781.1| putative D-alanyl-D-alanine carboxypeptidase [Turicibacter
           sanguinis PC909]
 gi|325844936|ref|ZP_08168301.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sp. HGF1]
 gi|292645902|gb|EFF63933.1| putative D-alanyl-D-alanine carboxypeptidase [Turicibacter
           sanguinis PC909]
 gi|325488986|gb|EGC91375.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sp. HGF1]
          Length = 368

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 77/280 (27%), Positives = 123/280 (43%), Gaps = 20/280 (7%)

Query: 57  IVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           I+++    ++   K  DE  Y AS+TK++T  +  E  Q     L+  + VS  A  Q  
Sbjct: 36  ILMEQTTGRVLFEKCPDEQMYIASITKILTSIVAIENGQ-----LDEWVEVSDNATRQVG 90

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S LYL           I  L+ RS ND +    E + G E  F  +M+ KAK+IGM+N+I
Sbjct: 91  SSLYLALGDQMKLIDVIYGLMLRSGNDGAMVIAEAVGGDEAGFVKMMNEKAKEIGMKNSI 150

Query: 176 YKNASGLHDKN-QITTARDQAILGILLRKN--FPQYYKYFSIRKFRYRNR--IITNHNKL 230
           ++N SGL +    ++TARD AIL      N  F +     + +         +  N +KL
Sbjct: 151 FQNPSGLDETTYNLSTARDMAILMQYAMNNPIFREVTGTETHKATSKNGTPYVWHNKHKL 210

Query: 231 L-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           +        G KTG+T  +   +VTS R  D  +V V +            + L     +
Sbjct: 211 VTGYYEYAIGGKTGFTERARRTLVTSARKDDLELVVVTLKAGDD---WNDHMSLFNYGFD 267

Query: 290 ----KKTLKHQQTHRKD-NLSSTSLKKSLMIKKLKRTYSQ 324
               KK ++  Q + +D N +     K  +   +K+  S+
Sbjct: 268 NYELKKVIEAGQLYGEDLNSTEKLYVKDTVYLAVKKDGSE 307


>gi|325846139|ref|ZP_08169233.1| serine-type D-Ala-D-Ala carboxypeptidase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481732|gb|EGC84767.1| serine-type D-Ala-D-Ala carboxypeptidase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 408

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 80/314 (25%), Positives = 142/314 (45%), Gaps = 29/314 (9%)

Query: 29  QLMGKILFLSIIMISMASELHAK----------PKYSSIVIDVNKNQMTGFKQDEPRYP- 77
            L+  ILFL   +   A +  AK             + ++ +     +   K  +  YP 
Sbjct: 9   ALILAILFLFSPLNVFADDSIAKEGDNVVGADKDVRAYLIGNQESGDIFYQKNADKTYPI 68

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP---SKLYLKEKTYFTTEQGILA 134
           AS++K+MT  +  E + S K+  +T++  +K A        S L +KE   +T ++ I  
Sbjct: 69  ASMSKLMTFLLTREAIDSGKISYDTKVKGTKEAEDLTGPEYSSLGIKEGEEYTIKELITG 128

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL---HDKNQITTA 191
           LI  S ND +      ISGSE  FA  M+ KA+++ +++  Y NASG+    D    ++A
Sbjct: 129 LIVVSGNDCANLLASKISGSEDNFAKEMNKKAQELNLKSQKYYNASGVNTEDDTQNSSSA 188

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT--NHNKLLNKMHNIDGIKTGYTRNSG 249
           +D   L  ++ K +P   +Y ++       + I   +   L   +  +DG+KTG T  +G
Sbjct: 189 KDLFELSRIILKKYPDILEYSNMDGIDDNKKDIHKKSTIPLKGDIKGVDGLKTGTTEEAG 248

Query: 250 FNIVTSLR------YKDDPIVAVVMGMPTSQERDQKALELI---TSFLEKKTLKHQQTHR 300
             ++T++         D   +++VMG      RD    +LI   + +   K L  +QT  
Sbjct: 249 SCLITTIDMGKFDPKNDYRAISIVMGAKDHPTRDAAMTDLIYYVSRYFNYKKLADKQTP- 307

Query: 301 KDNLSSTSLKKSLM 314
            D +   S+K+  +
Sbjct: 308 SDFVKVNSVKEGYV 321


>gi|206891061|ref|YP_002249135.1| D-alanyl-D-alanine carboxypeptidase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742999|gb|ACI22056.1| D-alanyl-D-alanine carboxypeptidase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 342

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 73/321 (22%), Positives = 139/321 (43%), Gaps = 32/321 (9%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASELHAK--------PKYSSIVIDVNKNQMTGFKQDE- 73
           +  + ++ M  ILF+ +++ S   E  A+           S++ +D    ++   K    
Sbjct: 11  FTCKGMRFMCFILFIYVLVYS--PEALAQETKKQVDIDAPSAVAVDAQTGKVLYGKNPHI 68

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
              PAS TK++T+ +  E     KL    ++ +S+ AA        L E   +     + 
Sbjct: 69  KLPPASTTKLVTVMVALE-----KLDPEHKVTISRKAARTPSVSPKLVEGEVYKVRDLVY 123

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
             + RS N  + A  E  +G E+ F  LM++K +KIG ++T + NASGL    Q TT  D
Sbjct: 124 LALMRSVNSAAVALAEATAGREENFVKLMNDKVQKIGAKDTRFINASGLPGAGQYTTVYD 183

Query: 194 QAILGILLRKNFPQYYKYFSIRKF-----RYRNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
              +       +P   +    R +       +   I N N+LL    N+ G KTGYTR +
Sbjct: 184 LTKIMSHALA-YPLIKEAVHTRVYLIRSENGKEHFIQNTNQLLWAEDNMIGGKTGYTRRA 242

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
               V++ +     +   ++G    ++  +   +L+      +  ++  T + + +   S
Sbjct: 243 RHCFVSAYKVNGRLVYTAILGDTNREQLWKDTQQLV------EKAEYVLTGKDEPVVKLS 296

Query: 309 LKKSLMIKKLKRTYSQFKKID 329
            +KS+M      +Y + +K++
Sbjct: 297 EEKSVM----PVSYKKNQKLN 313


>gi|209559380|ref|YP_002285852.1| Penicillin-binding protein 7 precursor (PBP-7) (D-alanyl-D-alanine-
           endopeptidase) [Streptococcus pyogenes NZ131]
 gi|209540581|gb|ACI61157.1| Penicillin-binding protein 7 precursor (PBP-7) (D-alanyl-D-alanine-
           endopeptidase) [Streptococcus pyogenes NZ131]
          Length = 437

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 72/316 (22%), Positives = 146/316 (46%), Gaps = 32/316 (10%)

Query: 19  YGSIYIQRNIQLMGKILFLS-IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
              I I+R   L   +L  S +  I +A++     ++ +IV++ +  ++   K  + P  
Sbjct: 1   MKDIMIKRWAILFFVVLTCSGLSKIVLAADFQVGAEH-AIVVEADSGRVLYEKDAKTPDA 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGI 132
            ASLTK++T Y++ + ++S +L L+ Q+ +S  A      ++ S +   +K  ++ +  +
Sbjct: 60  IASLTKLVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPF-DKKTYSVQDLL 118

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK------- 185
            A +  S+N  + A  E ++GSE  F   M  +    G+ +    NASGL ++       
Sbjct: 119 TATLVASSNSAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKDHRY 178

Query: 186 -------NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH--- 235
                    + +A+D AI+ + L ++FP+  +     +  +    I + N+LL  M    
Sbjct: 179 PGSALEEENMLSAQDVAIVTMHLLEDFPEILEITKQTEVDFAGNSIKSFNQLLPGMAKGR 238

Query: 236 -NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS----QERDQKALELITSFLEK 290
             +DG+KTG T  +G  +V +       ++ V++    S      R ++A  L+      
Sbjct: 239 AGVDGLKTGTTDLAGHCLVVTSIENGMRLITVILNADGSDKNQNTRFEQANRLLDYVA-- 296

Query: 291 KTLKHQQTHRKDNLSS 306
           +T   ++  +K +L S
Sbjct: 297 RTYCRRKILKKGSLVS 312


>gi|218903688|ref|YP_002451522.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH820]
 gi|228915143|ref|ZP_04078740.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228933848|ref|ZP_04096693.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|218538327|gb|ACK90725.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH820]
 gi|228825804|gb|EEM71592.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228844572|gb|EEM89626.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 338

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 131/290 (45%), Gaps = 26/290 (8%)

Query: 34  ILFLSIIMISM----------ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
           IL LS ++ ++             + AK   S+I+ID N  ++   K +E     A+L+K
Sbjct: 9   ILLLSFVITALIVLYFYLYVNGPIIQAK---SAILIDANSGEVVYKKNEENSIQSATLSK 65

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT YI+ E L    + L+  + +S        S + +  K   T    + AL+    N 
Sbjct: 66  LMTEYIVLEQLDKGNIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHALLLTGNNR 125

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDKNQI---TTARDQAILG 198
            + A  E I+G+E  F  LM+ KAK++ +   + + NA+G+++       TTA +   L 
Sbjct: 126 STLALAEHIAGNEDNFTQLMNEKAKQLKLSQPSPFLNATGMNNGTNKLSTTTAIEVGKLA 185

Query: 199 ILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGYTRNSGF 250
             L  +FP       +    F +++  + N NK++       K+  +DG++T ++ NS +
Sbjct: 186 TRLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKLQGVDGLQTSFSTNSNY 245

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + V++ +  D  +++V++          +  +L+       +    Q  +
Sbjct: 246 SFVSTAKRGDTRLISVILDADNENSTFIETKKLLQYGFNPSSYSALQAFK 295


>gi|300362213|ref|ZP_07058390.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus gasseri
           JV-V03]
 gi|300354832|gb|EFJ70703.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus gasseri
           JV-V03]
          Length = 317

 Score =  203 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 114/257 (44%), Gaps = 22/257 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT---- 109
           +++ ID     +   K        AS+TK++T Y+  + ++ KK+  +T +  ++     
Sbjct: 61  AAVAIDAKNENVIYAKNANQSLPIASMTKLLTAYLTLKAIKEKKISWDTTVSPTQEIINL 120

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           ++  + + + L     +T  +   A + +SAN+ +      +SGSE  F   M  +A K 
Sbjct: 121 SSNPDYAGVPLSLGQKYTVRELYDAALIKSANNAARMLAIAVSGSETNFLNQMRQQANKW 180

Query: 170 GMQNTIYKNASGLHDKN-----------QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
            + N       GL +KN              +A D AI+   L  ++P+      + K  
Sbjct: 181 KLHNVKLVTVDGLPEKNKNFLGMTTTIENKMSANDMAIIARKLVTDYPEVLSTTKVAKSD 240

Query: 219 YRNRIITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           +RN ++TN NK+L+ + +      +DG+KTG T  +G     ++   +  ++ V++G   
Sbjct: 241 FRNTLMTNSNKMLSGLSDYDPNYPVDGLKTGTTDGAGACFTCTMDKNNKRVITVILGAQN 300

Query: 273 SQERDQKALELITSFLE 289
             ER  +  +L+     
Sbjct: 301 DNERFSETKKLLNYSFN 317


>gi|210614210|ref|ZP_03290105.1| hypothetical protein CLONEX_02318 [Clostridium nexile DSM 1787]
 gi|210150787|gb|EEA81795.1| hypothetical protein CLONEX_02318 [Clostridium nexile DSM 1787]
          Length = 469

 Score =  203 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 70/305 (22%), Positives = 131/305 (42%), Gaps = 31/305 (10%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S IV+D++   +   K+ D+  YPAS+TK++T  +  E  Q     L  ++  ++     
Sbjct: 72  SGIVMDMDSGAILYAKKIDDQHYPASITKILTAVVALENSQ-----LTDRVKFTQNCIDF 126

Query: 113 --QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                + + +K     + E  +  ++  SAN+VS A    ++G    F  +M+ K  ++G
Sbjct: 127 LEYGDAHIGMKVGEEISMEDALYGMLLASANEVSYAIANSVNGGYDNFINMMNEKVAELG 186

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN---- 226
             N+ + NA+GLH+    T+A D A++G    K + ++ K    R++      +T+    
Sbjct: 187 GTNSHFVNANGLHNDEHYTSAHDMALIGAAAFK-YEEFRKITGTRQYTIGPTALTSESRT 245

Query: 227 ---HNKLL-----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM----GMPTSQ 274
              ++K+L     N      G KTGYT  +   +VT     D  +VAV +    G   + 
Sbjct: 246 FQQNHKMLFQGNRNYYEYCVGGKTGYTDQALTTLVTFATKDDKNLVAVTLRVHGGGQNAY 305

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRK-----DNLSSTSLKKSLMIKKLKRTYSQFKKID 329
              +  L+       K  +  +Q   K     D  +   L   +   KL  T  +  ++ 
Sbjct: 306 VDTRAMLDYAFDNFSKVPVTKEQVTDKNIKSVDENAYVMLPSGVTFDKLDATLQEPTELG 365

Query: 330 AKAHS 334
            K+ +
Sbjct: 366 DKSGT 370


>gi|305679771|ref|ZP_07402581.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
           matruchotii ATCC 14266]
 gi|305660391|gb|EFM49888.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
           matruchotii ATCC 14266]
          Length = 489

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 121/300 (40%), Gaps = 24/300 (8%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + +V D++   + G K    RY PAS+ K+    +  E +    L LN  + VS  +A
Sbjct: 166 ASAWLVWDLDSGAVLGTKDPHGRYRPASIIKV---LLAMEVIN--NLDLNKVVTVSAESA 220

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            Q  S + +     +T    +  L+ +S ND + A  + + G+E+     ++  A  +G 
Sbjct: 221 NQEGSAVGIGPGGKYTIRDLLHGLLLQSGNDAAHALAQELGGNEQA-LTRVNALAHNLGA 279

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR------IIT 225
            +T   + SGL      T+ARD AI      KN P + +     ++++          I 
Sbjct: 280 TDTYAASYSGLDAPGMSTSARDMAIFYHYAWKN-PTFAQIVGTDEYKFPGYQDNPGWPIG 338

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-DQKALELI 284
           N N LL    +  G KTG+T ++    V + +  +  I AV++     + R  Q+A +LI
Sbjct: 339 NDNGLLMNDPDGIGGKTGFTSDANHTFVGAKKVGNRRIAAVILDTTVDKGRPWQQAQKLI 398

Query: 285 T---------SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
                       L +      Q  +  + S+T   + +           +     K  ST
Sbjct: 399 DDNRNVTANVGMLPQPGAAGAQASQHPSASATPSPRPIQEVHASSGDGTYASQFMKNRST 458


>gi|152975589|ref|YP_001375106.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024341|gb|ABS22111.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH
           391-98]
          Length = 337

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 139/294 (47%), Gaps = 17/294 (5%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASEL--HAKPKYSSIVIDVNKNQMTGFKQDEPRYPAS- 79
           ++++ + +   +L    I++     +   A    S+I+ID +  ++   K +   +P S 
Sbjct: 3   FLKKAMLIFLSLLITIAIVLYFYIYVNGPAIQSQSAILIDADSGEIVYKKNETSPFP-SG 61

Query: 80  -LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
            L+K+MT YI+ E + +  L    ++ +   +     + +    K+  T      A+   
Sbjct: 62  DLSKLMTEYILLERIHNGTLKWEDEVIIKDNSFHIGANDIGTTVKSDITIRDLFHAVALT 121

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGM-QNTIYKNASGLHDKNQIT---TARDQ 194
             N  + A  E IS +E+ F  LM+ KA+++G+ ++T + N +G+ +K +     TA D 
Sbjct: 122 GNNRAALALAEHISTNEENFIKLMNEKARQLGLSKDTYFINVTGVSNKQEQFSKITALDA 181

Query: 195 AILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLN------KMHNIDGIKTGYTR 246
           + L   L  ++P   K  S+  ++  +++  + N N++L       K+ ++DG++T ++ 
Sbjct: 182 SKLARQLLYDYPTILKSSSMTSYQFIFKDIHVFNTNRMLYSLDKNVKLKSVDGLQTSFSP 241

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
            +G++ V + + KD  +++VV+G         ++ +L             Q+ +
Sbjct: 242 TTGYSFVGTAKEKDRRLISVVLGAKGENSSFIESKKLFNYGFHPTYFPSFQSFK 295


>gi|227509080|ref|ZP_03939129.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227191467|gb|EEI71534.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 421

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 68/267 (25%), Positives = 120/267 (44%), Gaps = 28/267 (10%)

Query: 53  KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+I +D +  Q+   K    P   AS++K+MT+YI+ + +Q  KL  N Q+ +S   A
Sbjct: 39  AKSAIAVDADTGQILYEKNAHQPLAIASISKLMTVYIVRKQIQEGKLSWNDQVKISPAVA 98

Query: 112 T----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                   + + LK    +     + A +  SAN  + A G+ +SG+ + FA  M+  A+
Sbjct: 99  KLSTASGLTNVPLKSGKSYKVRDLVKAALIVSANAAAIALGQKVSGNAQNFADKMTKTAR 158

Query: 168 KIGMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFS 213
            +G+++  + NA+GL               +   + +A+D A+L   L ++FP   K   
Sbjct: 159 GLGIKDAKFYNAAGLTNKLTGSLMLKKDSPNAENLMSAKDIALLASRLEESFPGLTKITG 218

Query: 214 IRKFRYRNRIITNHNKLLN-----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             +  +       HN+LL+     K   ++G+KTG +  +G     S  Y    IV VV+
Sbjct: 219 QTQMTFAGNSYAGHNQLLDDRQIAKGAVVNGLKTGTSDEAGACFAGSATYHGRRIVTVVL 278

Query: 269 GM----PTSQERDQKALELITSFLEKK 291
           G      T   R  +  +L+     K+
Sbjct: 279 GARNNSATDPARFIQTAKLMGIVFHKQ 305


>gi|49477760|ref|YP_036665.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49329316|gb|AAT59962.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 338

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 132/290 (45%), Gaps = 26/290 (8%)

Query: 34  ILFLSIIMISM----------ASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTK 82
           IL LS ++ ++             + AK   S+I+ID N  ++   K +E     A+L+K
Sbjct: 9   ILLLSFVITALIVLYFYLYVNGPIIQAK---SAILIDANSGEVVYKKNEETSIQSATLSK 65

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT YI+ E L    + L+  + +S        S + +  K   T    + AL+    N 
Sbjct: 66  LMTEYIVLEQLDKGNIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHALLLTGNNR 125

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDKNQI---TTARDQAILG 198
            + A  E I+G+E  F  LM+ KAK++ +   + + NA+G+++       TTA +   L 
Sbjct: 126 STLALAEHIAGNEDNFTQLMNEKAKQLKLSQPSPFLNATGMNNGTNKLSTTTAIEVGKLA 185

Query: 199 ILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGYTRNSGF 250
             L  +FP       +    F +++  + N NK++       K+  +DG++T ++ NS +
Sbjct: 186 TRLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKLQGVDGLQTSFSTNSNY 245

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + V++ +  +  +++V++          +  +L+    +  +    Q  +
Sbjct: 246 SFVSTAKRGNTRLISVILDADNENSTFIETKKLLQYGFDPSSYSALQAFK 295


>gi|30262550|ref|NP_844927.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Ames]
 gi|47527848|ref|YP_019197.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|165869045|ref|ZP_02213705.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0488]
 gi|167632709|ref|ZP_02391036.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0442]
 gi|167637949|ref|ZP_02396228.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0193]
 gi|170685562|ref|ZP_02876786.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0465]
 gi|170704398|ref|ZP_02894864.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0389]
 gi|177649431|ref|ZP_02932433.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0174]
 gi|190565326|ref|ZP_03018246.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis Tsiankovskii-I]
 gi|196036722|ref|ZP_03104114.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           W]
 gi|227814631|ref|YP_002814640.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. CDC 684]
 gi|228927615|ref|ZP_04090667.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228946196|ref|ZP_04108529.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229122097|ref|ZP_04251313.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
 gi|229603255|ref|YP_002866873.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0248]
 gi|254685126|ref|ZP_05148986.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254722535|ref|ZP_05184323.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A1055]
 gi|254737577|ref|ZP_05195280.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254743240|ref|ZP_05200925.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Kruger B]
 gi|254751892|ref|ZP_05203929.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Vollum]
 gi|254760412|ref|ZP_05212436.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Australia 94]
 gi|30257182|gb|AAP26413.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
           Ames]
 gi|47502996|gb|AAT31672.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|164715771|gb|EDR21288.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0488]
 gi|167514498|gb|EDR89865.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0193]
 gi|167533007|gb|EDR95643.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0442]
 gi|170130199|gb|EDS99060.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0389]
 gi|170670922|gb|EDT21661.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0465]
 gi|172084505|gb|EDT69563.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0174]
 gi|190563353|gb|EDV17318.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis Tsiankovskii-I]
 gi|195990686|gb|EDX54662.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           W]
 gi|227004352|gb|ACP14095.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
           CDC 684]
 gi|228661440|gb|EEL17064.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
 gi|228813487|gb|EEM59775.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228832095|gb|EEM77680.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229267663|gb|ACQ49300.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0248]
          Length = 338

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 132/290 (45%), Gaps = 26/290 (8%)

Query: 34  ILFLSIIMISM----------ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
           IL LS ++ ++             + AK   S+I+ID N  ++   K +E     A+L+K
Sbjct: 9   ILLLSFVITALIVLYFYLYVNGPIIQAK---SAILIDANSGEVVYKKNEENSIQSATLSK 65

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT YI+ E L    + L+  + +S        S + +  K   T    + AL+    N 
Sbjct: 66  LMTEYIVLEQLDKGNIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHALLLTGNNR 125

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDKNQI---TTARDQAILG 198
            + A  E I+G+E  F  LM+ KAK++ +   + + NA+G+++       TTA +   L 
Sbjct: 126 STLALAEHIAGNEDNFTQLMNEKAKQLKLSQPSPFLNATGMNNGTNKLSTTTAIEVGKLA 185

Query: 199 ILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGYTRNSGF 250
             L  +FP       +    F +++  + N NK++       K+  +DG++T ++ NS +
Sbjct: 186 TRLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKLQGVDGLQTSFSTNSNY 245

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + V++ +  D  +++V++          +  +L+    +  +    Q  +
Sbjct: 246 SFVSTAKRGDTRLISVILDADNENSTFIETKKLLQYGFDPSSYSALQAFK 295


>gi|298246708|ref|ZP_06970513.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
           racemifer DSM 44963]
 gi|297549367|gb|EFH83233.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
           racemifer DSM 44963]
          Length = 338

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 106/271 (39%), Gaps = 30/271 (11%)

Query: 39  IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKK 97
           + ++  A  + AK   ++ ++D++   +   +  E P   AS TK+MT  ++ E    KK
Sbjct: 69  LTVMGGAPPIDAK---AAYLLDIDTGNVLDDQNAEQPLPMASTTKIMTALVVIEAANLKK 125

Query: 98  LHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                +  VS    +     N S   L      T    + AL+  S +D +      ++G
Sbjct: 126 -----EATVSPDIPQYVFQHNGSNAKLMPGDTLTINDLLYALMLPSGDDAAIVLARAVAG 180

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGL--------HDKNQITTARDQAILGILLRKNF 205
           S   F  +M+  A +  +  T + N  GL              ++ARD A L      N 
Sbjct: 181 SSDAFVGMMNRFALRHHLFQTHFINPDGLTYYDANGNPLPGHYSSARDLARLTAYALSN- 239

Query: 206 PQYYKYFSIRKF------RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           P + K    R++      ++      N N L N      G+KTG+T  +G+ +V S    
Sbjct: 240 PLFAKIVGTRQYDLAWSPKHGAYHWANTNDLFNLYPATTGVKTGFTNEAGYCLVFSATRD 299

Query: 260 DDPIVAVVMGMPT--SQERDQKALELITSFL 288
              +V  V+      + +R + A  L+    
Sbjct: 300 HHHLVGTVLFSSNTDTNQRFRDAKTLLEWGF 330


>gi|47570219|ref|ZP_00240872.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus
           G9241]
 gi|47553125|gb|EAL11523.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus
           G9241]
          Length = 338

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 129/284 (45%), Gaps = 16/284 (5%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYI 88
            +  ++ L   +      + AK   S+I+ID +  ++   K +E P   A+L+K+MT YI
Sbjct: 15  FITALIVLYFYLYVNGPIIQAK---SAILIDAHSGEVVYKKNEETPIQSATLSKLMTEYI 71

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
             E L    + L+  + +S        S + +  K   T    I AL+    N  + A  
Sbjct: 72  TLEQLNEGTIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLIHALLLTGNNRSALALA 131

Query: 149 EFISGSEKKFAILMSNKAKKIGM-QNTIYKNASGLHDKNQI---TTARDQAILGILLRKN 204
           E I+G+E  F  LM+ KAK + + Q++ + NA+G+++       TTA + A L   L  +
Sbjct: 132 EHIAGNEDNFTQLMNKKAKHLKLSQSSPFLNATGMNNDTNKLSTTTATEVAKLATQLVTD 191

Query: 205 FPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGYTRNSGFNIVTSL 256
           FP       +    F ++N  + N NK++       K   +DG++T ++ N  ++ V++ 
Sbjct: 192 FPDVLNVTKLTSYQFTFKNTKVFNTNKMIYSLNKNIKHQGVDGLQTSFSNNGNYSFVSTA 251

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           +  D  +++V++          +  +L+    +  +    Q  +
Sbjct: 252 KRGDTRLISVILDAENENSTFIETKKLLQYGFDPSSYSALQAFK 295


>gi|251781775|ref|YP_002996077.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390404|dbj|BAH80863.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 412

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 73/339 (21%), Positives = 148/339 (43%), Gaps = 34/339 (10%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R   ++  ++ L+     + S+  +     +I ++V+  ++   K+ +   P AS+TK
Sbjct: 2   IKRLFVVL--LITLAFGATPVNSDDFSVAAKQAIAVEVDSGKILYEKEADKAVPVASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ + + KL   + + +S          + S + L  +  +T ++ + ALI  
Sbjct: 60  LLTTYLVYKEIANGKLEWGSSVTISNYPYELTTNYSISNVPLDAR-KYTVKELLKALIVT 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           +AN  + A  E I G+E KF   MS + K+ G+ +    NA+GL               D
Sbjct: 119 NANSPAIALAEKIGGTEPKFVDKMSQQLKEWGISDAKLVNATGLPNHFLGENKYPKTEDD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
              + +ARD AI+   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENLFSARDLAIIARHLLTEFPEVLKITSKPSANFAGQTIYSYNYMLKDMPYYRDGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER--------DQKALELITSFLEKKT 292
             GY+   G + V +       ++ VV+    +QE         +Q    L+T+F + + 
Sbjct: 239 FVGYSEKGGASFVATSVENRMRVITVVLNADQAQEDEFAVFSATNQLLQYLLTNFQKVQV 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
           L   ++ +             +    ++  S  K  ++K
Sbjct: 299 LNKSKSGQVKAFPILDSPNKSVPLVAEKNLSLIKPANSK 337


>gi|167756632|ref|ZP_02428759.1| hypothetical protein CLORAM_02169 [Clostridium ramosum DSM 1402]
 gi|167702807|gb|EDS17386.1| hypothetical protein CLORAM_02169 [Clostridium ramosum DSM 1402]
          Length = 342

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 126/283 (44%), Gaps = 15/283 (5%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP--KYSSIVIDVNKNQMT--GFKQDEPRYPASLT 81
           + ++ M   L +S++M  + + + A P    S IV++   +Q+   G  QD  +  AS++
Sbjct: 3   KGVKKMKLGLIISLMMTLVNTNVSAVPFQGKSYIVMEA-SHQIVIEGSNQDYIQSVASIS 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  I  E ++     L+T I V  T      S +Y+      +    +  L+ RS N
Sbjct: 62  KIMTCIIAIENME-----LDTIITVDDTINKAWGSGVYIHIGDKISLRDLLYGLMLRSGN 116

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILGI 199
           D +    + +     KF  +M++KAK++ + +T + N +GL   D    +T  D A L  
Sbjct: 117 DAAVMIAKAVGKEIPKFVDMMNDKAKELQLHSTTFSNPTGLDEEDNGNQSTVYDMARLMA 176

Query: 200 LLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              +N P + +  S ++++    N    N NKLL       G KTG+T+ +   ++T  R
Sbjct: 177 YCHQN-PIFNEIVSTKEYKREDGNGTWHNKNKLLTNYEYCIGGKTGFTKKARRTLITMAR 235

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
             D  ++ V        E  QK  E   + L+   +  +    
Sbjct: 236 KDDLDLIIVTFNCGNDFEFHQKKFEECYANLKATKIFSKGIVE 278


>gi|161507933|ref|YP_001577897.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus helveticus DPC
           4571]
 gi|160348922|gb|ABX27596.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus helveticus DPC
           4571]
          Length = 431

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 81/361 (22%), Positives = 151/361 (41%), Gaps = 48/361 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPK-----------YSSIVIDVNKNQMTGFKQ- 71
           I+R +  +  ++ L     + ++ + A               S+I ID N  Q+   K  
Sbjct: 7   IKRAVISLVALISLVSCGATFSAPVKADGANYQTDQVKLNVKSAIAIDSNSGQVLYAKNA 66

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKTAATQNPSKLYLKEKTYFT 127
           D+    AS+TK+MT+Y+    ++++KL  + ++     + K A     S + LK    +T
Sbjct: 67  DKTLPIASMTKLMTVYLTLNAIKNQKLAWDQKVKPTASIVKVANNAEYSNVPLKMGHSYT 126

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
            +Q   A +  SAN  +   G+ I+GS+K F   M ++ KK G+++     A GL + N 
Sbjct: 127 IKQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRSQVKKWGIKDAKIYTACGLPNGNV 186

Query: 187 -------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNK 229
                           +A+D AI+G  L ++FP+      +    ++++  T    N N 
Sbjct: 187 GKDAYPGVNKNAENSMSAKDMAIVGQNLIQDFPEVLDTTKLAHLDFKDQGHTTKMANFNW 246

Query: 230 LL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQK 279
           +L      ++ + +DG+KTG T  +G   + ++ +    ++ VVMG      T   R  +
Sbjct: 247 MLKGLSQYDQTYPVDGLKTGTTDAAGACFIGTVNHAGARLITVVMGARHKDGTDPARFMQ 306

Query: 280 ALELITSFLEKK---TLKHQ-QTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
             +L+     K    T     Q     N+  T    +     LK   + +   D K    
Sbjct: 307 TKKLMNYVFTKYRPVTFNAGSQMAGVKNIKVTDGDNATTNLGLKEKTTIWDPADGKTLVA 366

Query: 336 Q 336
           +
Sbjct: 367 K 367


>gi|167946344|ref|ZP_02533418.1| Serine-type D-Ala-D-Ala carboxypeptidase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 228

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 91/154 (59%)

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +I +S ND   A  E I+GSE+ FA +M+N A+++GM  + + N++GL DK+  TT  D 
Sbjct: 1   MIIQSGNDACVALAEHIAGSEETFAEVMNNHARRLGMHASHFINSTGLPDKDHYTTPEDI 60

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
           A + +   + FP YYK++S + F +      N NKLL + + +DG+KTG+T  +G+ +V 
Sbjct: 61  AKVAMATIREFPDYYKWYSEKSFVFNKIKQHNRNKLLWRDNTVDGMKTGHTEAAGYCLVA 120

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           S + +   +++VVMG  + + R   +  L+    
Sbjct: 121 SAQREQMRLISVVMGTKSEKARASASQALLNYGF 154


>gi|218507214|ref|ZP_03505092.1| probable D-alanyl-D-alanine carboxypeptidase protein [Rhizobium
           etli Brasil 5]
          Length = 200

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 74/197 (37%), Positives = 119/197 (60%), Gaps = 4/197 (2%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLY 87
           +L    L  +++M + A    A+   +S V+D    Q+     QD+  YPASLTKMMTLY
Sbjct: 7   RLRATALSSALLMGAFA---QAEAGQASFVVDAQSGQVLEASNQDDLNYPASLTKMMTLY 63

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + FE L   +L    ++ +S+ A ++ P KL +      T  + + +++  SAND + A 
Sbjct: 64  LAFEALHQGRLTWEQKLTMSENAESKEPFKLAIGAGRQVTLREAVESIVVLSANDSAVAI 123

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
            E + GSE+ FA  M++KA ++GM++T++KN SGL D  Q+TTARD A LG+ L ++FP+
Sbjct: 124 AEQLGGSEQAFARAMTDKAHQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRDFPE 183

Query: 208 YYKYFSIRKFRYRNRII 224
            +K FS+R F++R   +
Sbjct: 184 EFKLFSMRGFQFRGMKL 200


>gi|259046641|ref|ZP_05737042.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella adiacens
           ATCC 49175]
 gi|259036806|gb|EEW38061.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella adiacens
           ATCC 49175]
          Length = 500

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 145/309 (46%), Gaps = 36/309 (11%)

Query: 55  SSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK--TAA 111
           S+I++D    Q+      D+P  PAS TK+MT Y+++E +++ K+ L+T+I  ++   A 
Sbjct: 92  SAILVDAETGQILYGDHIDKPWDPASTTKLMTAYLVYEAIKAGKITLDTKITATELDRAI 151

Query: 112 TQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +   + S   ++    +     +  ++  S+N  +      IS S +++  +M++KAK++
Sbjct: 152 STIDDISNNQIRAGIEYPVRDLLYLMMYPSSNVATVMLSHAISQSNEEYIKMMNDKAKEL 211

Query: 170 GMQNTIYKNAS--------------GLHDKNQITTARDQAILGILLRKNFPQYYKYF--- 212
           GM N+ + N S              G+ D+   TTARD A L     KN+P++ +     
Sbjct: 212 GMTNSKFYNPSGAVVSAFRGLYTVEGVPDEYNQTTARDLATLSYYFLKNYPEFLEITREP 271

Query: 213 --SIRKFRYRNRIITNHNKLLNKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
             +  +           N+L + M+    ++DG KTG + N+  N V + + K   ++ V
Sbjct: 272 AVTTMEGTVVEETFYTLNQLASGMNQGYFHVDGFKTGSSPNAALNHVITAKEKGRRVIEV 331

Query: 267 VMGMPTSQERDQKA---LELITSFLEKK-TLKHQQTHRKDNLSSTSLKKSLMIKKLKRTY 322
           +MG+ +  + +       +   + LEK  T  H++T  K  +     ++     K+++  
Sbjct: 332 LMGVGSWSDYNTSVYYRAQFGNAILEKAFTEYHEETVLKAGVHEIDGQE----IKVEKDI 387

Query: 323 SQFKKIDAK 331
               K D+K
Sbjct: 388 KAITKGDSK 396


>gi|229097094|ref|ZP_04228060.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
 gi|229116057|ref|ZP_04245450.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
 gi|228667392|gb|EEL22841.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
 gi|228686323|gb|EEL40235.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
          Length = 338

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 134/296 (45%), Gaps = 21/296 (7%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
           ++++   L+   +  ++I++          + AK   S+I+ID N  ++   K +E P  
Sbjct: 3   FLKKFTILLLSFIITALIVLYFYLYVNGPIIQAK---SAILIDANSGEVIYKKNEETPIQ 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            A+L+K+MT YI+ E L   K+ L+  + +S        + + +  K   T    + AL+
Sbjct: 60  SATLSKLMTEYIVLEQLNDGKIQLDESVKISNELFQAETTPMQVTAKDKTTVRDLLHALL 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDKNQI---TTAR 192
               N  + A  E I G+E  F  LM+ KAK++ +   + + N++G +        TTA+
Sbjct: 120 LTGNNRSALALAEHIGGNEDNFTTLMNEKAKQLQLSQPSPFLNSTGANQDTNKQSNTTAK 179

Query: 193 DQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGY 244
           D A L   L K+FP       +    F ++N  + N NK++       K   +DG++T +
Sbjct: 180 DAAKLATHLVKDFPNVLNMTKLTSYQFTFKNFQVFNTNKMIYSLNENIKFQGVDGLQTSF 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + N   + V + +  D  +++V++          +  +L+    E  +    Q  +
Sbjct: 240 STNGNNSFVGTAKLGDTRLISVILESDEENTTFIETKKLLQYGFEPSSYSALQAFK 295


>gi|331700972|ref|YP_004397931.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus buchneri
           NRRL B-30929]
 gi|329128315|gb|AEB72868.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus buchneri
           NRRL B-30929]
          Length = 421

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 81/328 (24%), Positives = 144/328 (43%), Gaps = 36/328 (10%)

Query: 24  IQRNIQLMGKILFLSIIMISMA-SELHAKPKY---SSIVIDVNKNQMTGFKQ-DEPRYPA 78
           I+    LMG    L++ M   A S +  +P     S+I +D +  Q+   K  ++PR  A
Sbjct: 5   IKILTALMGFFCVLTLSMTVDAKSTVTPEPAIYAKSAIAVDADSGQILYQKNANQPRAIA 64

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILA 134
           S++K+MT+YI+ + +++ KL  + ++ +S    K +     + + L     ++  Q + A
Sbjct: 65  SISKLMTVYIVHQQIRANKLAWDDKVKISSELAKLSTASGLTNVPLTAGKAYSVRQLVNA 124

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK--------- 185
            +  SAN  + A G+ ++G+  KFA LM+  A+KIG+ +  + NASGL +K         
Sbjct: 125 TLVESANAAALALGQKVAGTATKFAALMNKTARKIGISDGHFYNASGLTNKLTGKLALSH 184

Query: 186 -----NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL-----LNKMH 235
                  + +A+D A+L   L + FP+           +    +T HN+L     L +  
Sbjct: 185 VSANAENLLSAKDVALLAQKLLQKFPKVTNITEQTTSTFYGTTMTGHNQLIDDHNLGQGV 244

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKD-DPIVAVVMGMPTSQ----ERDQKALELITSFLEK 290
            +DG+KTG +  +G   V S        I+ VV+G          R  +  +L+      
Sbjct: 245 RVDGLKTGTSDKAGACFVGSATTNGKHRIITVVLGARNKSANDPARFIQTAKLMKWVYAT 304

Query: 291 K---TLKHQQTHRKDNLSSTSLKKSLMI 315
                L    T    + +     K   I
Sbjct: 305 HQPIKLAAGATIAGVDKAKIPDGKQTTI 332


>gi|228942535|ref|ZP_04105070.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228982101|ref|ZP_04142393.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
 gi|228777639|gb|EEM25914.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
 gi|228817128|gb|EEM63218.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326943187|gb|AEA19083.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 423

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 59/297 (19%), Positives = 130/297 (43%), Gaps = 28/297 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 43  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T ++   +++  SAN  S A  E ++ SEK F  L +  AKK+G++   + 
Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAESEKNFLNLANEHAKKLGLKKYKFV 162

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  IL  ++   +P+  +    R   + +  
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKVMITKYPEMLEDTKQRFRNFPDNH 222

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 282

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
           ER  ++ ELI         +  +  + + +S    K+  +    ++  +   K  +K
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTISVVKGKEDQVTVAPEKEITVIAKKGSK 339


>gi|139473812|ref|YP_001128528.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes str.
           Manfredo]
 gi|134272059|emb|CAM30298.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
           pyogenes str. Manfredo]
          Length = 411

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 70/311 (22%), Positives = 144/311 (46%), Gaps = 32/311 (10%)

Query: 24  IQRNIQLMGKILFLS-IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLT 81
           I+R   L   +L  S +  I +A++     ++ +IV++ +  ++   K  + P   ASLT
Sbjct: 2   IKRWAILFFVVLTCSGLSKIVLAADFQVGAEH-AIVVEADSGRVLYEKDAKTPDAIASLT 60

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALIT 137
           K++T Y++ + ++S +L L+ Q+ +S  A      ++ S +   +K  ++ +  + A + 
Sbjct: 61  KLVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPF-DKKTYSVQDLLTATLV 119

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK------------ 185
            S+N  + A  E ++GSE  F   M  +    G+ +    NASGL ++            
Sbjct: 120 ASSNSAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKDNRYPGSAL 179

Query: 186 --NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDG 239
                 +A+D A++ + L ++FP+  +     +  +    I + N+LL  M      +DG
Sbjct: 180 EEENTLSAQDVAVVTMHLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMAKGRAGVDG 239

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS----QERDQKALELITSFLEKKTLKH 295
           +KTG T  +G  +V +       ++ V++    S      R ++A  L+      +T   
Sbjct: 240 LKTGTTDLAGHCLVVTSIENGMRVITVILNADGSDKNQNTRFEQANRLLDYVA--RTYCR 297

Query: 296 QQTHRKDNLSS 306
           ++  +K +L S
Sbjct: 298 RKILKKGSLVS 308


>gi|126650121|ref|ZP_01722354.1| DacB [Bacillus sp. B14905]
 gi|126593293|gb|EAZ87255.1| DacB [Bacillus sp. B14905]
          Length = 348

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 137/320 (42%), Gaps = 30/320 (9%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEY 92
           +L + ++M+ +     A+      V+D +  ++  G   +E    ASLTK+ T  +  E 
Sbjct: 1   MLMIIVLMVILPQTSFARGGSGYAVLDGDTGRVLIGSNSNERLPIASLTKIWTALVAIEN 60

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
                  L  ++ +S  AA    S +YL+     T E  +  L+ RS ND +TA  E + 
Sbjct: 61  SD-----LQEEVVISPKAAMAEGSSIYLQAGETVTVETLLYGLMLRSGNDAATALAEHVG 115

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYK 210
           GS + F  LM+ +A   G+ NT++ N SGLH ++ +++ARD A +  +  +N  F +   
Sbjct: 116 GSVEGFVKLMNERAVIAGLTNTVFMNPSGLHHEDHLSSARDTAEMLRVALQNKTFEKIAS 175

Query: 211 YFSIRKFRYRNRIITNHNKLLNKMHNI----------------------DGIKTGYTRNS 248
               R       +  N ++LL +   +                         KTG+T+ +
Sbjct: 176 TVLYRANTVNGMLWENKHRLLREGSGMAAEIDDETEQPVSSLKSATGVAYAGKTGFTKVA 235

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
           G  + T+ +      + V + +       +     + +  + +T+  +  +  +   +  
Sbjct: 236 GRTLATAFQKDGQTCIVVTLNVSDDWNVHRSFSNQVWTDYDLETVVKKGKYNVNKKLAIR 295

Query: 309 LKKSLMIKKLKRTYSQFKKI 328
           L++ + ++  K   +Q +++
Sbjct: 296 LEEPVRLQLNKEEKAQVRQV 315


>gi|187935697|ref|YP_001886551.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723850|gb|ACD25071.1| putative D-alanyl-D-alanine carboxypeptidase DacB [Clostridium
           botulinum B str. Eklund 17B]
          Length = 289

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 69/280 (24%), Positives = 127/280 (45%), Gaps = 17/280 (6%)

Query: 28  IQLMGKILFLSIIMISMASELHAKP-----KYSSIVIDVNKNQMTGFKQDEPRYP-ASLT 81
           I ++  I+   I   +  ++   K         +I +D    ++   +      P AS T
Sbjct: 11  ITMLLSIMLFQIFSKAALADSKLKDNFRVNARCAIALDRESKEVLFEQNAYEIVPMASTT 70

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K++T  I  E        L+ ++ +SK AA+   SK+  K       ++    L+ +S N
Sbjct: 71  KILTAIIAIEQGD-----LDKKVVISKKAASIRGSKVGYKAGEEIRLKELAFGLMFKSGN 125

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D + A  E + GS + FA +M++ A  IG+ ++ +++  GL   +  ++A D AIL    
Sbjct: 126 DAAIAIAETLGGSVEGFAQIMNHYATGIGIIDSHFESPHGLDSNSHYSSAYDLAILTAKG 185

Query: 202 RKN--FPQYYKYFSIRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
            +   F +      I K +Y   R   N NK+L  +   +G+KTGYT  +G  +V+S+ +
Sbjct: 186 MEYDLFREIVGSKQISKEKYDFTRDYNNINKILWLIPEANGVKTGYTGGAGKCLVSSVNH 245

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
           K   I+ VV+  P   +R  +  ++    LE    ++   
Sbjct: 246 KGKDIIIVVLNCP---DRWAQTQKIYNHILETVAFENHNI 282


>gi|160893432|ref|ZP_02074217.1| hypothetical protein CLOL250_00982 [Clostridium sp. L2-50]
 gi|156864827|gb|EDO58258.1| hypothetical protein CLOL250_00982 [Clostridium sp. L2-50]
          Length = 533

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 67/276 (24%), Positives = 120/276 (43%), Gaps = 26/276 (9%)

Query: 39  IIMISMASELHAKPKYS---SIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQ 94
           ++      E    P+ +   +IV+D N   +   K   + +YPAS+TK++T  +  E  +
Sbjct: 80  LVTTEYPDEPGKAPELASNYAIVLDANTGNILYQKNAFDKQYPASITKLLTFLLAIENTK 139

Query: 95  SKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
                L   + +S  A     +  S + L E    + E  +  ++  SAN+V+   GEF+
Sbjct: 140 -----LTDTVTMSHDAVFGIDRGSSHIGLDEGEQISMEDALYGMMLESANEVAWGIGEFV 194

Query: 152 SG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           SG S + FA +M+ +A ++G   T + NA+GL D+N  TT  D A++     K   ++ K
Sbjct: 195 SGGSIEDFAKMMNERAVELGCLGTHFVNANGLPDENHYTTCYDMALITKACLK-HDEFRK 253

Query: 211 YFSIRKFRYR-------NRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRY 258
               R             R +  H K+ N          +G KTGYT ++   +VT  + 
Sbjct: 254 ITGTRNHVIGPTNICEEERQLWQHCKMTNPDSKYYYEYCEGGKTGYTNDALNTLVTWSKK 313

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
            D  ++ V+M    +      +  +        +L+
Sbjct: 314 GDTELICVLMNCNGAANTYTDSKAIYEYCFRNYSLQ 349


>gi|118477954|ref|YP_895105.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
           Hakam]
 gi|118417179|gb|ABK85598.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
           Hakam]
          Length = 338

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 135/296 (45%), Gaps = 21/296 (7%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RY 76
           ++++   L+   +  ++I++          + AK   S+I+ID N  ++   K +E    
Sbjct: 3   FLKKITILLLSFVITALIVLYFYLYVNGPIIQAK---SAILIDANSGEVVYKKNEETSIQ 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            A+L+K+MT YI+ E L    + L+  + +S        S + +  K   T    + AL+
Sbjct: 60  SATLSKLMTEYIVLEQLDKGNIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHALL 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI-YKNASGLHDKNQI---TTAR 192
               N  + A  E I+G+E  F  LM+ KAK++ +     + NA+G+++       TTA 
Sbjct: 120 LTGNNRSTLALAEHIAGNEDNFTQLMNEKAKQLKLSQPFPFLNATGMNNGTNKLSTTTAI 179

Query: 193 DQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGY 244
           +   L   L  +FP       +    F +++  + N NK++       K+  +DG++T +
Sbjct: 180 EVGKLATRLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKLQGVDGLQTSF 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + NS ++ V++ +  D  +++V++          +  +L+    +  +    Q  +
Sbjct: 240 STNSNYSFVSTAKRGDTRLISVILDADNENSTFIETKKLLQYGFDPSSYSALQAFK 295


>gi|282891874|ref|ZP_06300353.1| hypothetical protein pah_c200o019 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498134|gb|EFB40474.1| hypothetical protein pah_c200o019 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 427

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 127/296 (42%), Gaps = 36/296 (12%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYI 88
           L+  +LF S  + S   ++  + + ++I+++    ++   K     Y PAS+TK+ T   
Sbjct: 8   LIISLLFFSNSLFSNTLDVFVEAE-AAILMNAETGKILYEKNIHTSYFPASITKIATAAF 66

Query: 89  IFEYLQSKKLHLNTQIP--------VSKTAATQ------------NPSKLYLKEKTYFTT 128
           + ++       L+  +         V++ A  +              + + + +    + 
Sbjct: 67  VLKFFSD---KLDVIVTAEQDSIGWVTEEAKRKSNYTLPAYWLVPGGTHMGIMKGEQLSL 123

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           E  +  L+  SAND +    +++ G+   F   ++  AK+ G Q+T + N  GLH     
Sbjct: 124 EDLLHGLMLVSANDSANVIAQYVGGTVPDFVDQLNAYAKQAGCQHTTFHNPHGLHHPEHK 183

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR------IITNHNKLLNK----MHNID 238
           TTA D A+L      + P + K F   K+           ++  ++ LL +         
Sbjct: 184 TTAYDMALLAKEAL-SIPAFCKMFGTVKYTRPKTNKQESSVLVQNHPLLKQGKFYYAKAL 242

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
           G KTGYT  +  N+V + R KD  ++AV++      +  + A++L  +  ++  ++
Sbjct: 243 GAKTGYTNLAAHNLVVAARDKDRTLIAVLLKTKERDQLFKDAIKLFEAAFQQPKVE 298


>gi|331084355|ref|ZP_08333459.1| hypothetical protein HMPREF0992_02383 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330401619|gb|EGG81200.1| hypothetical protein HMPREF0992_02383 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 417

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 72/260 (27%), Positives = 111/260 (42%), Gaps = 21/260 (8%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
                    S ++++ +  Q+   K  +E RYPAS TK+MT  II E +      LN  I
Sbjct: 37  PSAPEISSASGVLMEASSGQVLFDKSMNEIRYPASTTKVMTALIILENIPD----LNKNI 92

Query: 105 PVSKT---AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
             +           S +  +     T EQ + A++  SAN+V T     ++GS + F  +
Sbjct: 93  TFTDIILPDLAPGNSTINAQVGEVLTVEQCLYAIMLASANEVCTQMAVEVAGSVENFTAM 152

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR- 220
           M+ KA +IG  NT + NA+GL D N  TTA D A++     KN   + K     K+    
Sbjct: 153 MNAKAAEIGCTNTHFVNANGLPDPNHYTTAYDLALILREAVKN-EAFCKIAGAAKYTIPP 211

Query: 221 ------NRIITNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
                 +R + NHN LL             KTG+T  +   +VT+   +D  ++ VV+  
Sbjct: 212 TNKTAASRNMENHNALLVDGKYYYEGAIAGKTGHTEAARNTLVTAASREDMTLICVVLRS 271

Query: 271 PTSQERDQKALELITSFLEK 290
               ER      L     + 
Sbjct: 272 END-ERFTDTKTLFDYGFDN 290


>gi|229103155|ref|ZP_04233841.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
 gi|228680260|gb|EEL34451.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
          Length = 338

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 136/296 (45%), Gaps = 21/296 (7%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
           ++++   L+   +  ++I++          + AK   S+I+ID N  ++   K +E P  
Sbjct: 3   FLKKFTILLLSFIITALIVLYFYLYVNGPIIQAK---SAILIDANSGEVIYKKNEETPIQ 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            A+L+K+MT YI+ E L + K+ L+  + +S        + + +  K   T    + AL+
Sbjct: 60  SATLSKLMTEYIVLEQLNNGKIQLDESVKISNELFQAETTPMQVTAKDKTTVRDLLHALL 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDKNQI---TTAR 192
               N  + A  E I G+E  F  LM+ KAK++ +   + + N++G +        TTA+
Sbjct: 120 LTGNNRSALALAEHIGGNEDNFTTLMNEKAKQLQLSQPSPFLNSTGANQDTNKQSNTTAK 179

Query: 193 DQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGY 244
           D A L   L K+FP       +    F ++N  + N NK++       K+  +DG++T +
Sbjct: 180 DAAKLATHLVKDFPNVLNMTKLTSYQFTFKNFQVFNTNKMIYSLNENIKLQGVDGLQTSF 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + N   + V + +  D  +++V++          +  +L+    E  +    Q  +
Sbjct: 240 STNGNNSFVGTAKLGDTRLISVILESDEENTTFIETKKLLQYGFEPSSYSALQAFK 295


>gi|1420858|emb|CAA61521.1| penicillin-binding protein [Streptococcus pyogenes]
          Length = 324

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 67/307 (21%), Positives = 133/307 (43%), Gaps = 26/307 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R I L+   LF +   +S   E ++     +I +D+   ++   K  +   P AS++K
Sbjct: 2   IKRLISLVVIALFFAASTVS--GEEYSVTAKHAIAVDLESGKVLYEKDAKEVVPVASVSK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ +   KL+ ++ + +S            S + L +K  +T ++ + AL+  
Sbjct: 60  LLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPL-DKRKYTVKELLSALVVN 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           +AN  + A  E I G+E KF   M  + ++ G+ +    N++GL               D
Sbjct: 119 NANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
                 A D A++   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENCFCATDLAVIARHLLLEFPEVLKLSSKSSTIFAGQTIYSYNYMLKGMPCYREGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
             GY++ +G + V +       ++ VV+    S E D    +     L+   +  Q+   
Sbjct: 239 FVGYSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQL 298

Query: 301 KDNLSST 307
            +N    
Sbjct: 299 IENNKPV 305


>gi|169827289|ref|YP_001697447.1| D-alanyl-D-alanine carboxypeptidase [Lysinibacillus sphaericus
           C3-41]
 gi|168991777|gb|ACA39317.1| Penicillin-binding protein 5* precursor (D-alanyl-D-alanine
           carboxypeptidase) [Lysinibacillus sphaericus C3-41]
          Length = 348

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 65/320 (20%), Positives = 132/320 (41%), Gaps = 30/320 (9%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEY 92
           +L + ++M+ +     A+      V+D    ++  G   +E    ASLTK+ T  +  E 
Sbjct: 1   MLMIIVLMVILPQSSFARGGSGYAVLDGETGRVLIGSNSNERLPIASLTKIWTALVAIEN 60

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
                  L  ++ +S  AA    S +YL+     T E  +  L+ RS ND +TA  E + 
Sbjct: 61  SD-----LQEEVVISPKAAMAEGSSIYLQAGETVTVETLLYGLMLRSGNDAATALAEHVG 115

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYK 210
           GS + F  LM+ +A   G+ NT++ N SGLH +  +++ARD A +  +  +N  F +   
Sbjct: 116 GSVEGFVKLMNERAVIAGLTNTVFMNPSGLHHEEHLSSARDTAEMLRVALQNKTFEKIAS 175

Query: 211 YFSIRKFRYRNRIITNHNKLLNKMHNI----------------------DGIKTGYTRNS 248
               +       +  N ++LL +   +                         KTG+T+ +
Sbjct: 176 TVLYKANTVNGMLWENKHRLLREGSGMAAEIDDETEQPVSSLKSATGVAYAGKTGFTKVA 235

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
           G  + T+ +      + V +         +     +    + +T+  +  +  +   +  
Sbjct: 236 GRTLATAFQKDGQTCIVVTLNESDDWNVHRSFSNQVWRDYDLETVVKKGKYNVNKKLAIR 295

Query: 309 LKKSLMIKKLKRTYSQFKKI 328
           L++ + ++  K    Q +++
Sbjct: 296 LEEPVRLQLNKEEKEQVRQV 315


>gi|19745420|ref|NP_606556.1| penicillin-binding protein [Streptococcus pyogenes MGAS8232]
 gi|139473105|ref|YP_001127820.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes str.
           Manfredo]
 gi|19747531|gb|AAL97055.1| putative penicillin-binding protein [Streptococcus pyogenes
           MGAS8232]
 gi|134271351|emb|CAM29569.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
           pyogenes str. Manfredo]
          Length = 410

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 133/307 (43%), Gaps = 26/307 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R I L+   LF +   +S   E ++     +I +D+   ++   K  +   P AS++K
Sbjct: 2   IKRLISLVVIALFFAASTVS--GEEYSVTAKHAIAVDLESGKVLYEKDAKEVVPVASVSK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ +   KL+ ++ + +S            S + L +K  +T ++ + AL+  
Sbjct: 60  LLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPL-DKRKYTVKELLSALVVN 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           +AN  + A  E I G+E KF   M  + ++ G+ +    N++GL               D
Sbjct: 119 NANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
                 A D AI+   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIFDGQTIYSYNYMLKGMPCYREGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
             GY++ +G + V +       ++ VV+    S E D    +     L+   +  Q+   
Sbjct: 239 FVGYSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQL 298

Query: 301 KDNLSST 307
            +N    
Sbjct: 299 IENNKPV 305


>gi|228975468|ref|ZP_04136023.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228784262|gb|EEM32286.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 441

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 59/297 (19%), Positives = 130/297 (43%), Gaps = 28/297 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 61  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 120

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T ++   +++  SAN  S A  E ++ SEK F  L +  AKK+G++   + 
Sbjct: 121 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAESEKNFLNLANEHAKKLGLKKYKFV 180

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  IL  ++   +P+  +    R   + +  
Sbjct: 181 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKVMITKYPEMLEDTKQRFRNFPDNH 240

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                + N N +L          DG+KTG +  +G+    + +  D  +++V++   +  
Sbjct: 241 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 300

Query: 275 ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
           ER  ++ ELI         +  +  + + +S    K+  +    ++  +   K  +K
Sbjct: 301 ERFTESRELIEYGFNNFEKQKLKVDKNNTISVVKGKEDQVTVAPEKEITVIAKKGSK 357


>gi|229105975|ref|ZP_04236597.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
 gi|228677459|gb|EEL31714.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
          Length = 423

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 130/298 (43%), Gaps = 28/298 (9%)

Query: 62  NKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPS 116
           +  ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S
Sbjct: 42  DTGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFS 101

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
            +  ++   +T ++   +++  SAN  S A  E ++GSEK F  L ++ AKK+G++   +
Sbjct: 102 NVPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANDHAKKLGLKKYKF 161

Query: 177 KNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRY--- 219
            NA+GL++ +                 +ARD  IL  ++   +P+  +    R   +   
Sbjct: 162 VNATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKIIITKYPEMLEDTKQRFRNFPDN 221

Query: 220 --RNRIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
             R   + N N +L          DG+KTG +  +G+    + +  D  +++V++   + 
Sbjct: 222 HPRPIRMENWNWMLPGAAFAYEGSDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSM 281

Query: 274 QERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
            ER  ++  LI         +  +  + + +S    K   +    ++  +   K   K
Sbjct: 282 DERFTESRALIEYGFNSFEKQKLKIDKNNTISVVKGKADQVTVAPEKEITVIAKKGDK 339


>gi|309800179|ref|ZP_07694364.1| penicillin-binding protein 3 [Streptococcus infantis SK1302]
 gi|308116187|gb|EFO53678.1| penicillin-binding protein 3 [Streptococcus infantis SK1302]
          Length = 397

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 141/326 (43%), Gaps = 32/326 (9%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLH 99
             +++++        +I ++ N  ++   K   +P   AS++K++T+Y+++E L+  K+ 
Sbjct: 17  ATTVSAQDFDVAAKHAIAVEANSGKILYEKDATQPVEIASISKLLTVYLVYEALEQGKIS 76

Query: 100 LNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
           L+T + +S            S + ++ + Y T E+ + A +  SAN  + A  E I+GSE
Sbjct: 77  LSTPVEISDYPYQLTTNSAASNVPMEARNY-TVEELLEATLVSSANSAAIALAEKIAGSE 135

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAILGILL 201
           K F  +M  K ++ G+Q+    N +GL+              D     +A D A++   L
Sbjct: 136 KDFVDMMKAKLQEWGIQDATLVNTTGLNNETLGTNIYPGSKKDDENKLSAYDVAVVARNL 195

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIKTGYTRNSGFNIVTSLR 257
              +PQ  +        +    I + N +L  M      +DG+KTG T  +G + V +  
Sbjct: 196 ILKYPQVLEITKKPSSTFAGMTIHSTNYMLEGMPAYRGGVDGLKTGTTDKAGASFVGTTV 255

Query: 258 YKDDPIVAVVMGMPTSQ----ERDQKA---LELITSFLEKKTLKHQQTHRKDNLSST-SL 309
            K   I+ VV+           R       L+ I+S    +T+  Q    +D+ S     
Sbjct: 256 EKGMRIITVVLNADNQDTNPYARFTATSSILDYISSNFSLQTIVKQGESYEDSKSPVLDG 315

Query: 310 KKSLMIKKLKRTYSQFKKIDAKAHST 335
           K+  +    K      +++ ++  ST
Sbjct: 316 KEDTVTAVAKEDIKIVQRLGSRTQST 341


>gi|229196731|ref|ZP_04323474.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
 gi|228586806|gb|EEK44881.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
          Length = 338

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 133/290 (45%), Gaps = 26/290 (8%)

Query: 34  ILFLSIIMISM----------ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
           IL LS ++ ++             + AK   S+I+ID +  ++   K +E P   A+L+K
Sbjct: 9   ILLLSFVITALIVLYFYLYVNGPIIQAK---SAILIDAHSGEVVYTKNEETPIQSATLSK 65

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT YI  E L    + L+  + +S        S + +  K   T    + AL+    N 
Sbjct: 66  LMTEYITLEQLNEGNIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHALLLTGNNR 125

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGM-QNTIYKNASGLHDKNQI---TTARDQAILG 198
            + A  E I+G+E KF  LM+ KAK + + Q++ + NA+G+++       TTA + A L 
Sbjct: 126 SALALAEHIAGNEDKFTQLMNEKAKHLKLSQSSPFLNATGMNNDTNKLSTTTAIEVAKLA 185

Query: 199 ILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGYTRNSGF 250
             L  +FP       +    F +++  + N NK++       K   +DG++T ++ N  +
Sbjct: 186 TQLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKHQGVDGLQTSFSTNGNY 245

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + V++ +  D  +++V++          +  +L+    +  +    Q  +
Sbjct: 246 SFVSTAKRGDTRLISVILDAENENSTFIETKKLLQYGFDPSSYSALQAFK 295


>gi|94989757|ref|YP_597857.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS10270]
 gi|94543265|gb|ABF33313.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS10270]
          Length = 410

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 133/307 (43%), Gaps = 26/307 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R I L+   LF +   +S   E ++     +I +D+   ++   K  +   P AS++K
Sbjct: 2   IKRLISLVVIALFFAASTVS--GEEYSVTAKHAIAVDLESGKVLYEKDAKEVVPVASVSK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ +   KL+ ++ + +S            S + L +K  +T ++ + AL+  
Sbjct: 60  LLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPL-DKRKYTVKELLSALVVN 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           +AN  + A  E I G+E KF   M  + ++ G+ +    N++GL               D
Sbjct: 119 NANSPAIALAERIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
                 A D AI+   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIFAGQTIYSYNYMLKGMPCYREGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
             GY++ +G + V +       ++ VV+    S E D    +     L+   +  Q+   
Sbjct: 239 FVGYSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQL 298

Query: 301 KDNLSST 307
            +N    
Sbjct: 299 IENNKPV 305


>gi|52839376|emb|CAH57481.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
 gi|52839378|emb|CAH57482.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
          Length = 389

 Score =  202 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 68/311 (21%), Positives = 131/311 (42%), Gaps = 32/311 (10%)

Query: 56  SIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---- 110
           +I ++ N  ++   K   +P   AS+TK++T+Y+++E L++  + L+T + +S       
Sbjct: 8   AIAVEANTGKILYEKDATQPVEIASITKLITVYLVYEALENGSITLSTPVDISDYPYQLT 67

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S + ++ + Y T E+ + A +  SAN  + A  E I+GSEK F  +M  K  + G
Sbjct: 68  TNSEASNIPMEARNY-TVEELLEATLVSSANSAAIALAEKIAGSEKDFVDMMRAKLLEWG 126

Query: 171 MQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
           +Q+    N +GL+              D+    +A D AI+   L K +PQ  +      
Sbjct: 127 IQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYDVAIVARNLIKKYPQVLEITKKPS 186

Query: 217 FRYRNRIITNHNKLLNKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP- 271
             +    IT+ N +L  M       DG+KTG T  +G + V +   K   ++ VV+    
Sbjct: 187 STFARMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKGMRVITVVLNADH 246

Query: 272 ---TSQERDQKALELITS----FLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
                  R      L+      F  +K ++    ++         K+  +          
Sbjct: 247 QDNNPYARFTATSSLMDYISSTFTLRKIVQQGDAYQDSKAPVQDGKEDTVTAVAPEDIYL 306

Query: 325 FKKIDAKAHST 335
            +++  ++  +
Sbjct: 307 IERVGNQSSQS 317


>gi|238917952|ref|YP_002931469.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium eligens ATCC
           27750]
 gi|238873312|gb|ACR73022.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium eligens ATCC
           27750]
          Length = 464

 Score =  202 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 70/260 (26%), Positives = 107/260 (41%), Gaps = 20/260 (7%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            +       S I++D +   +   +   E  YPAS TK++T  +  E       +++  +
Sbjct: 53  PDAPEVNSSSCILVDADTGSILFERNSHEKCYPASTTKILTGLLTIE-----NCNMDDVV 107

Query: 105 PVSKTAATQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
             S+ AAT       + L  K    FT  Q +  L+  SAN+++ A GE ++GS   F  
Sbjct: 108 TFSQAAATSINIYEDANLGCKVGEQFTVNQLLHGLLLYSANEMAYALGEHVAGSIDAFVD 167

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSIRKFR 218
           +M+ KAK++G  NT + NASGL++ N  TTA D A++      N  F             
Sbjct: 168 MMNAKAKELGALNTHFANASGLYNTNHYTTAYDMAMIARGCYNNASFVSIDSTADAYVIP 227

Query: 219 YRN----RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             N    R I + +K+L           G KTGYT  S   +VT        ++ VV   
Sbjct: 228 ATNMSAQRTIRHRHKMLKGRSYYYEYCKGGKTGYTDESQNTLVTFAEKDGMRLICVVFKE 287

Query: 271 PTSQERDQKALELITSFLEK 290
            T   R      L       
Sbjct: 288 ATDDLRYTDTKTLFDWGFSN 307


>gi|329116584|ref|ZP_08245301.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parauberis
           NCFD 2020]
 gi|326906989|gb|EGE53903.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parauberis
           NCFD 2020]
          Length = 406

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 68/335 (20%), Positives = 148/335 (44%), Gaps = 35/335 (10%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYS----SIVIDVNKNQMTGFKQDEPRYP-ASLTKMM 84
           ++  IL  S+++   A  + A    +    +I ++ +  ++   K    + P ASLTK++
Sbjct: 5   IVKLILTTSLLVTFSAQTVFAADFSADSRHAIAVESDTGKILYEKSGNKKAPIASLTKLL 64

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           T+YI  + +++ K+  N Q+ +S+     A     S   L     ++ ++ + + +  SA
Sbjct: 65  TIYITLKEIKAGKISWNDQVKLSEYAQSLATDPEISNPPLTS-DTYSVKELVDSSLIVSA 123

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD--------------KN 186
           N  + A  E+I+GSE KF  +M  + ++ G+ + +  ++SGL +                
Sbjct: 124 NSSAIALAEYIAGSEPKFVDMMKKQVEQWGITDYLLVDSSGLPNSLLKGHTYPGSSPKDE 183

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIKT 242
            + +A+  AI+   L  +FP+  +  S  +  +    + + N LL         +DG+KT
Sbjct: 184 NMLSAKSLAIIAYHLIHDFPEVLQITSQPQMIWGYETLYSSNYLLPGQEMGRAGVDGLKT 243

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE----RDQKALELITSFL---EKKTLKH 295
           G T  +G   + +    +  ++ V++    ++E    R  +  +L+       +KK +  
Sbjct: 244 GTTNLAGQTYIATATENNMRLITVLLHANHTKEDHYARFTQTNQLLDYCFQNYQKKLMVK 303

Query: 296 QQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
           +     + ++  + KK  +  K K       KI+ 
Sbjct: 304 KDQPLPNRIAVENGKKDKISIKTKTNIYAIHKINT 338


>gi|251782267|ref|YP_002996569.1| carboxypeptidase, penicillin-binding protein [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390896|dbj|BAH81355.1| carboxypeptidase, penicillin-binding protein [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 411

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 135/295 (45%), Gaps = 28/295 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
           I+R   L   +L  S +  ++ +         +IV++V+  ++   K  + P   ASLTK
Sbjct: 2   IKRLAILFFVVLACSGLGKTVLAADFQVGAEHAIVVEVDSGRVLYEKDAKTPDAIASLTK 61

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++ + + S +L L+ Q+ +S  A       + S +   +KTY + +  + A +  
Sbjct: 62  LVTAYLVLDKVNSGQLQLSDQVNLSDYAFELTTDSSLSNVPFDQKTY-SVQDLLEATLVA 120

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-------------- 184
           S+N  + A  E ++GSE  F   M  +  + G+ +    NASGL +              
Sbjct: 121 SSNSAAIALAEKVAGSEPNFVAQMRAQLSRWGITSGKIFNASGLPNEVLKDHRYPGSALE 180

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
           +  + +A+D AI+ + L ++FP+  +     +  +    I + N+LL  M      +DG+
Sbjct: 181 EENMLSAQDVAIVTMHLLEDFPEILEITKQTEVDFAGNSIKSFNQLLPGMAKGRAGVDGL 240

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS----QERDQKALELITSFLEKK 291
           KTG T  +G  +V +       ++ V++    S      R ++A  L+    ++ 
Sbjct: 241 KTGTTDLAGHCLVVTSIENGMRLITVILNADGSDKNQNTRFEQANHLLDYVAKRY 295


>gi|227511987|ref|ZP_03942036.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus
           buchneri ATCC 11577]
 gi|227084795|gb|EEI20107.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus
           buchneri ATCC 11577]
          Length = 421

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 69/282 (24%), Positives = 125/282 (44%), Gaps = 28/282 (9%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSK 96
           S    ++++        S+I +D +  Q+   K    P   AS++K+MT+YI+ + +Q  
Sbjct: 24  SAYAATVSTSQPVIYAKSAIAVDADTGQILYEKNAHQPLAIASISKLMTVYIVQKQIQEG 83

Query: 97  KLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           KL  N Q+ +S   A        + + LK    +     + A +  SAN  + A G+ +S
Sbjct: 84  KLSWNDQVKISPAVAKLSTASGLTNVPLKSGKSYKVRDLVKAALIVSANAAAIALGQKVS 143

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HDKNQITTARDQAILG 198
           G+ + FA  M+  A+ +G+++  + NA+GL               +   + +A+D A+L 
Sbjct: 144 GNAQNFADKMTKTARGLGIKDAKFYNAAGLTNKLTGSLMLKKDSPNAENLMSAKDIALLA 203

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-----KMHNIDGIKTGYTRNSGFNIV 253
             L ++FP   K     +  +       HN+LL+     K   ++G+KTG +  +G    
Sbjct: 204 SRLEESFPGLTKITRQTQMNFSGNSYAGHNQLLDDRQIAKGAVVNGLKTGTSDEAGACFA 263

Query: 254 TSLRYKDDPIVAVVMGM----PTSQERDQKALELITSFLEKK 291
            S  Y    IV VV+G      T   R  +  +L+     K+
Sbjct: 264 GSATYHGRRIVTVVLGARNNSATDPARFIQTAKLMGIVFHKQ 305


>gi|282883288|ref|ZP_06291884.1| putative D-alanyl-D-alanine carboxypeptidase [Peptoniphilus
           lacrimalis 315-B]
 gi|281296856|gb|EFA89356.1| putative D-alanyl-D-alanine carboxypeptidase [Peptoniphilus
           lacrimalis 315-B]
          Length = 446

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 135/297 (45%), Gaps = 18/297 (6%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S ++ D    ++   +  DE R  AS +K+++++++F+ ++   +  + ++ + + ++  
Sbjct: 85  SYLLGDYQSGKILEAYNIDEVRPMASTSKLVSIFVVFDKIKDGTISKSDELTIDRESSLL 144

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   LKE    T +  I A +  S ND  TA  + ISGS + F++LM+ K K +G++N
Sbjct: 145 GGSTFKLKENDKMTVDDLIKASMVVSGNDAITALAKHISGSVEAFSVLMNKKCKDLGLKN 204

Query: 174 TIYKNASGLHD----KNQITTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIITNH 227
               N +GL +         T R+  IL   L K +P+   Y      K   RN +  N 
Sbjct: 205 AHMVNPTGLTNYAIEDYNKMTTREMFILSCELIKYYPEILNYTKEAYLKDEDRNFLEYNT 264

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTS-------LRYKDDPIVAVVMGMPTSQERDQKA 280
           N +L  +  IDG+KTGYT  SG  ++++        + KD  +V +V G     +R    
Sbjct: 265 NPILGIVPEIDGLKTGYTNASGRTVISTGLKKGIEGKSKDLRLVGIVTGCNGDWQRYVAI 324

Query: 281 LELITSFLEKKTLKHQQTHRKD----NLSSTSLKKSLMIKKLKRTYSQFKKIDAKAH 333
             L++   +        T  K     N+ +    ++ +  K+K      KK + K  
Sbjct: 325 KRLMSKGFDNYEYTIFGTESKPIQNINVENAQDAQTPVFIKIKGYALVNKKENIKKD 381


>gi|329666891|gb|AEB92839.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus johnsonii DPC
           6026]
          Length = 308

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 111/257 (43%), Gaps = 22/257 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++ I+         K        AS+TK++T+Y+  + ++ KK+  +T +  ++     
Sbjct: 52  AAVAINAKDGSTIYAKNANQSLPIASMTKLLTVYLTLQAIKEKKISWDTTVTPTQEIVDL 111

Query: 114 NP----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 + + L+    +T  +   A + +SAN+ +      +SGSE  F   M  +A+K 
Sbjct: 112 GSNPDYASVPLRLGQKYTVRELYDAALIKSANNAARLLAIAVSGSETNFLNQMRQQARKW 171

Query: 170 GMQNTIYKNASGLHDK-----------NQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
            + N  +    GL +K               +A D AI+   L  ++P+        +  
Sbjct: 172 KLNNAKFVTVDGLPEKKKNFLGMTTTVENKMSANDMAIVARKLTTDYPEILNTTKQARAY 231

Query: 219 YRNRIITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
           ++N ++TN NK+L+ +        +DG+KTG T  +G     ++      ++ V++G   
Sbjct: 232 FQNTLMTNSNKMLSGLSYYDSTFPVDGLKTGTTDGAGSCFTCTVNKNGKRVITVILGAEN 291

Query: 273 SQERDQKALELITSFLE 289
             ER  +  +L++    
Sbjct: 292 DNERFVETKKLLSYCFN 308


>gi|218462487|ref|ZP_03502578.1| probable serine-type D-Ala-D-Ala carboxypeptidase protein
           [Rhizobium etli Kim 5]
          Length = 494

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 90/281 (32%), Positives = 144/281 (51%), Gaps = 36/281 (12%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKM 83
            + + ++     + ++    A    A  KY+ IV+D     +   +  +   YPASLTKM
Sbjct: 18  AKLLAILSVAFTVVLVDSVNAEAEAANSKYAGIVVDAKTGNVLYSENADRLQYPASLTKM 77

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MTLY++FE L+  ++ L+T +P S  AA Q P+KL ++     T EQGIL L+T SAND 
Sbjct: 78  MTLYLVFEALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDA 137

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIY------KNASGLHDKNQITTARDQAIL 197
           STA GE ++   ++ ++  ++  +    ++  +      ++A    D +    AR    L
Sbjct: 138 STALGEMLA--RQRGSLRPADDCQGTRPRHDAHHLSQRPRSAEHGADDDGARPAR----L 191

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
           GI LR++FPQYY YFS R F                       KTGYTR +GFN+V+S++
Sbjct: 192 GIALRQHFPQYYGYFSTRAF-----------------------KTGYTRAAGFNLVSSVQ 228

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
                IV+VV+G  +   RD +   LI ++L K + +   +
Sbjct: 229 VDGKSIVSVVLGGTSGAARDAQMRNLIATYLPKASSRGGNS 269


>gi|15674465|ref|NP_268639.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes M1 GAS]
 gi|13621563|gb|AAK33360.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase)
           [Streptococcus pyogenes M1 GAS]
          Length = 410

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 133/307 (43%), Gaps = 26/307 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R I L+   LF +   +S   E ++     +I +D+   ++   K  +   P AS++K
Sbjct: 2   IKRLISLVVIALFFAASTVS--GEEYSVTAKHAIAVDLESGKVLYEKDAKEVVPVASVSK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ +   KL+ ++ + +S            S + L +K  +T ++ + AL+  
Sbjct: 60  LLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPL-DKRKYTVKELLSALVVN 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           +AN  + A  E I G+E KF   M  + ++ G+ +    N++GL               D
Sbjct: 119 NANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
                 A D AI+   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIFAGQTIYSYNYMLKGMPCYREGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
             GY++ +G + V +       ++ VV+    S E D    +     L+   +  Q+   
Sbjct: 239 FVGYSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQL 298

Query: 301 KDNLSST 307
            +N    
Sbjct: 299 IENNKPV 305


>gi|187779546|ref|ZP_02996019.1| hypothetical protein CLOSPO_03142 [Clostridium sporogenes ATCC
           15579]
 gi|187773171|gb|EDU36973.1| hypothetical protein CLOSPO_03142 [Clostridium sporogenes ATCC
           15579]
          Length = 378

 Score =  202 bits (514), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 131/308 (42%), Gaps = 29/308 (9%)

Query: 32  GKILFLSIIMISMASELHA---------KPKY----SSIVIDVNKNQMTGFK-QDEPRYP 77
             IL LS+I I       A         KP Y     +I ID +   +   K  +E    
Sbjct: 8   KFILILSLIFIVTLIPTKAYGKEESQKNKPPYINARCAIAIDKDTGIVLFEKSANEIVPI 67

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK+MT  +  +Y       L+ +I +S+ A     S +  K+    T  + +  L+ 
Sbjct: 68  ASTTKIMTTLVALKYGD-----LDRKIEISENADKIKGSTVGYKKGEKITLRELLYGLML 122

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           RS ND + A  E I+GS + F+ LM+  A +IG+ N+ +    GL      +TA D A L
Sbjct: 123 RSGNDAAIAIAEGIAGSVEGFSKLMNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLA-L 181

Query: 198 GILLRKNFPQYYKYFSIRKFRYRN----RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
                K +  + K  S +  +       R   N NK+L K+   DG+KTGYT  +G  +V
Sbjct: 182 ATATAKKYELFNKIVSSKDVKKEEYSFTRDYHNINKILWKIPEADGVKTGYTGKAGKCLV 241

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL-----KHQQTHRKDNLSSTS 308
           TS +   + I+ VV+          K  + + +  + K +        Q   ++   +  
Sbjct: 242 TSSKINGNDIIIVVLNCTPRWNETTKIHDYVKNNYDFKKICTKGDILDQAVFEEGSVNII 301

Query: 309 LKKSLMIK 316
             K ++I 
Sbjct: 302 ADKDIIIP 309


>gi|21909750|ref|NP_664018.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
           pyogenes MGAS315]
 gi|28895132|ref|NP_801482.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase)
           [Streptococcus pyogenes SSI-1]
 gi|94987881|ref|YP_595982.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS9429]
 gi|21903934|gb|AAM78821.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
           pyogenes MGAS315]
 gi|28810377|dbj|BAC63315.1| putative penicillin-binding protein (D-alanyl-D-alanine
           carboxypeptidase) [Streptococcus pyogenes SSI-1]
 gi|94541389|gb|ABF31438.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS9429]
          Length = 410

 Score =  202 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 133/307 (43%), Gaps = 26/307 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R I L+   LF +   +S   E ++     +I +D+   ++   K  +   P AS++K
Sbjct: 2   IKRLISLVVIALFFAASTVS--GEEYSVTAKHAIAVDLESGKVLYEKDAKEVVPVASVSK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ +   KL+ ++ + +S            S + L +K  +T ++ + AL+  
Sbjct: 60  LLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPL-DKRKYTVKELLSALVVN 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           +AN  + A  E I G+E KF   M  + ++ G+ +    N++GL               D
Sbjct: 119 NANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
                 A D AI+   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIFAGQTIYSYNYMLKGMPCYREGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
             GY++ +G + V +       ++ VV+    S E D    +     L+   +  Q+   
Sbjct: 239 FVGYSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQL 298

Query: 301 KDNLSST 307
            +N    
Sbjct: 299 IENNKPV 305


>gi|71910062|ref|YP_281612.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS5005]
 gi|71852844|gb|AAZ50867.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS5005]
          Length = 410

 Score =  202 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 133/307 (43%), Gaps = 26/307 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R I L+   LF +   +S   E ++     +I +D+   ++   K  +   P AS++K
Sbjct: 2   IKRLISLVVIALFFAASTVS--GEEYSVTAKHAIAVDLESGKVLYEKDAKEVVPVASVSK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ +   KL+ ++ + +S            S + L +K  +T ++ + AL+  
Sbjct: 60  LLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPL-DKRKYTVKELLSALVVN 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           +AN  + A  E I G+E KF   M  + ++ G+ +    N++GL               D
Sbjct: 119 NANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
                 A D AI+   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIFAGQTIYSYNYMLKGMPCYREGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
             GY++ +G + V +       ++ VV+    S E D    +     L+   +  Q+   
Sbjct: 239 FVGYSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQL 298

Query: 301 KDNLSST 307
            +N    
Sbjct: 299 IENNKPV 305


>gi|256843728|ref|ZP_05549216.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus
           125-2-CHN]
 gi|256615148|gb|EEU20349.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus
           125-2-CHN]
          Length = 433

 Score =  202 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 67/270 (24%), Positives = 123/270 (45%), Gaps = 33/270 (12%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKT 109
           S+I ID +  Q+   K   +    AS+TK++T+Y+  + +++ KL  + ++    P+ K 
Sbjct: 51  SAIAIDSDSGQILYAKNATQTLPIASMTKLVTVYLALQAIKNNKLSWDQKVKPTAPIVKV 110

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A     S + LK    +T +Q   A +  SAN  +   G+ I+GS+K F   M  + KK 
Sbjct: 111 ANNAEYSNVPLKMGHSYTIKQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRAQVKKW 170

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++     A GL + N                 +A+D AI+G  L K+FP+      + 
Sbjct: 171 GIEDAKIYTACGLPNGNLGKDAYPGVNKNAENSMSAKDMAIVGQNLIKDFPEVLDTTKLA 230

Query: 216 KFRYRN----RIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              +++      + N N +L  +      + +DG+KTG T  +G   + ++++    ++ 
Sbjct: 231 HLDFKDAGHTTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVQHNGARLIT 290

Query: 266 VVMGMP----TSQERDQKALELITSFLEKK 291
           VVMG      T   R  +  +L+     K 
Sbjct: 291 VVMGARHRDGTDPARFMQTKKLMNYIFTKY 320


>gi|56807642|ref|ZP_00365536.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Streptococcus
           pyogenes M49 591]
          Length = 410

 Score =  202 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 67/307 (21%), Positives = 133/307 (43%), Gaps = 26/307 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R I L+   LF +   +S   E ++     +I +D+   ++   K  +   P AS++K
Sbjct: 2   IKRLISLVVIALFFAASTVS--GEEYSVTAKHAIAVDLESGKVLYEKDAKEVVPVASVSK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ +   KL+ ++ + +S            S + L +K  +T ++ + AL+  
Sbjct: 60  LLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPL-DKRKYTVKELLSALVVN 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           +AN  + A  E I G+E KF   M  + ++ G+ +    N++GL               D
Sbjct: 119 NANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
                 A D A++   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENCFCATDLAVIARHLLLEFPEVLKLSSKSSTIFAGQTIYSYNYMLKGMPCYREGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
             GY++ +G + V +       ++ VV+    S E D    +     L+   +  Q+   
Sbjct: 239 FVGYSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQL 298

Query: 301 KDNLSST 307
            +N    
Sbjct: 299 IENNKPV 305


>gi|313893802|ref|ZP_07827368.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313441366|gb|EFR59792.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 268

 Score =  202 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 65/269 (24%), Positives = 119/269 (44%), Gaps = 14/269 (5%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTL 86
           I  +G  L  S I  +      +    + ++ID +  ++   K  +   +PAS TKM+TL
Sbjct: 2   IAFIGATLLGSSISYAAYIAPPSTVGEAVVLIDADTKEILFAKNPDKWMHPASTTKMVTL 61

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
               E    K   L+    +S  A +   S L ++     T E  +  ++  S ND +  
Sbjct: 62  LTALEL---KGTQLDELATISSYATSMEESNLGVRVGDQITLEAVLEGMMVASGNDAAVV 118

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
             E +SGS +KF   M+  A K G +N+++ N  GL      +TARD A++     K + 
Sbjct: 119 VAENVSGSVEKFGKDMTRIAAKAGAKNSVFLNPHGLTQMGHHSTARDLAMIAAYGMK-YQ 177

Query: 207 QYYKYFSIRKFR--YRNR---IITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
            +    +   ++  Y+NR    I   N  + NK    +G+KTG+T  +G  ++ S     
Sbjct: 178 MFRDKVANDYYKVPYQNRAPVTIRTTNHFIRNKYPGANGLKTGFTNAAGECLIASATRNG 237

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLE 289
             ++ V++       R ++A++ +    +
Sbjct: 238 HTMIVVML---NDDNRWEEAVQFLDYGFK 263


>gi|300814763|ref|ZP_07095011.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300511150|gb|EFK38402.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 446

 Score =  202 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 134/297 (45%), Gaps = 18/297 (6%)

Query: 55  SSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S ++ D    ++   +  DE R  AS +K+++++++F+ ++   +  + ++ + + ++  
Sbjct: 85  SYLLGDYQSGKILEAYNIDEVRPMASTSKLVSIFVVFDKIKDGTISKSDELTIDRESSIL 144

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   LKE    T +  I A +  S ND  TA  + ISGS + F++LM+ K K +G++N
Sbjct: 145 GGSTFKLKENDKMTVDDLIKASMVVSGNDAITALAKHISGSVEAFSVLMNKKCKDLGLKN 204

Query: 174 TIYKNASGLHD----KNQITTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIITNH 227
               N +GL +         T R+  IL   L K +P+   Y      K   RN +  N 
Sbjct: 205 AHMVNPTGLTNYAIEDYNKMTTREMFILSCELIKYYPEILNYTKEAYLKDEDRNFLEYNT 264

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTS-------LRYKDDPIVAVVMGMPTSQERDQKA 280
           N +L  +  IDG+KTGYT  SG  ++++        + KD  +V +V G     +R    
Sbjct: 265 NPILGIVPEIDGLKTGYTNASGRTVISTGLKKGIEGKSKDLRLVGIVTGCNGDWQRYVAI 324

Query: 281 LELITSFLEKKTLKHQQTHRKD----NLSSTSLKKSLMIKKLKRTYSQFKKIDAKAH 333
             L++   +        T  K     N+ +    ++ +  K K      KK + K  
Sbjct: 325 KRLMSKGFDNYEYTIFGTESKPIQNINVENAQDAQTPVFIKSKGYALVNKKENIKKD 381


>gi|323126583|gb|ADX23880.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 412

 Score =  202 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 72/339 (21%), Positives = 148/339 (43%), Gaps = 34/339 (10%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R   ++  ++ L+     + S+  +     +I ++V+  ++   K+ +   P AS+TK
Sbjct: 2   IKRLFVVL--LITLAFGATPVNSDDFSVAAKQAIAVEVDSGKILYEKEADKAVPVASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ + + KL   + + +S          + S + L  +  +T ++ + ALI  
Sbjct: 60  LLTTYLVYKEIANGKLEWGSSVTISNYPYELTTNYSISNVPLDAR-KYTVKELLKALIVT 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-------------- 184
           +AN  + A  E I G+E KF   MS + K+ G+ +    NA+GL +              
Sbjct: 119 NANSPAIALAEKIGGTEPKFVDKMSQQLKEWGISDAKLVNATGLPNHFLGENKYPKTEDE 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
              + +ARD AI+   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENLFSARDLAIIARHLLTEFPEVLKITSKPSANFAGQTIYSYNYMLKDMPYYRDGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER--------DQKALELITSFLEKKT 292
             GY+   G + V +       ++ VV+    +QE         +Q    L+T+F + + 
Sbjct: 239 FVGYSEKGGASFVATSVENRMRVITVVLNADQAQEDEFAVFSATNQLLQYLLTNFQKVQV 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
           L   ++ +             +    ++  S  K  ++K
Sbjct: 299 LNKSKSGQVKAFPILDSPNKSVPLVAEKNLSLIKPANSK 337


>gi|229170279|ref|ZP_04297958.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
 gi|228613202|gb|EEK70348.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
          Length = 338

 Score =  202 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 138/296 (46%), Gaps = 21/296 (7%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
           ++++   L+   L  ++I++          + AK   S+I+ID N  ++   K +E P  
Sbjct: 3   FLKKITVLLLSFLITALIVLYFYLYVNGPIIQAK---SAILIDTNSGEIVYKKNEETPIQ 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            A+L+K+MT YI  E L   K+ L+  + +S        S + +  K   T    + AL 
Sbjct: 60  SATLSKLMTEYIALEQLNEGKIQLDELVKISNEVFRAETSPIQVTSKDKTTVRDLLHALF 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDKNQI---TTAR 192
               N  + A  E I+G+E  F +LM++KAK++ +   + + NA+G+++       TT+ 
Sbjct: 120 LTGNNRSALALAEHIAGNEDNFTLLMNDKAKQLKLSQPSPFLNATGINNDTNKQSTTTSI 179

Query: 193 DQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGY 244
           D A L   L K+FP       +    F +++  + N NK++       K+  +DG++T +
Sbjct: 180 DVAKLATQLVKDFPDVLNVTKLTSYQFTFKDSKVFNTNKMIYSLNKNIKLQGVDGLQTSF 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + N  ++ V++    D  +++V++          +  +L+    +  +    Q  +
Sbjct: 240 STNGNYSFVSTATRGDTRLISVILDAGDENSTFIETKKLLQYGFDPSSYSALQAFK 295


>gi|229118879|ref|ZP_04248226.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
 gi|228664535|gb|EEL20030.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
          Length = 423

 Score =  202 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 59/298 (19%), Positives = 129/298 (43%), Gaps = 28/298 (9%)

Query: 62  NKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPS 116
           +  ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S
Sbjct: 42  DTGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFS 101

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
            +  ++   +T ++   +++  SAN  S A  E ++GSEK F  L ++ AKK+G++   +
Sbjct: 102 NVPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANDHAKKLGLKKYKF 161

Query: 177 KNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN- 221
            NA+GL++ +                 +ARD  IL   +   +P+  +    R   + + 
Sbjct: 162 VNATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKTIITKYPEMLEDTKQRFRNFPDN 221

Query: 222 ----RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                 + N N +L          DG+KTG +  +G+    + +  D  +++V++   + 
Sbjct: 222 HPKPIRMENWNWMLPGAAFAYEGSDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSM 281

Query: 274 QERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
            ER  ++  LI         +  +  + + +S    K   +    ++  +   K   K
Sbjct: 282 DERFTESRALIEYGFNSFKKQKLKIDKNNTISVVKGKADQVTVAPEKEITVIAKKGDK 339


>gi|323127166|gb|ADX24463.1| putative D,D-carboxypeptidase, penicillin-binding protein
           [Streptococcus dysgalactiae subsp. equisimilis ATCC
           12394]
          Length = 415

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 135/295 (45%), Gaps = 28/295 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
           I+R   L   +L  S +  ++ +         +IV++V+  ++   K  + P   ASLTK
Sbjct: 6   IKRLAILFFVVLACSGLGKTVLAADFQVGAEHAIVVEVDSGRVLYEKDAKTPDAIASLTK 65

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++ + + S +L L+ Q+ +S  A       + S +   +KTY + +  + A +  
Sbjct: 66  LVTAYLVLDKVNSGQLQLSDQVNLSDYAFELTTDSSLSNVPFDQKTY-SVQDLLEATLVA 124

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-------------- 184
           S+N  + A  E ++GSE  F   M  +  + G+ +    NASGL +              
Sbjct: 125 SSNSAAIALAEKVAGSEPNFVAQMRAQLSRWGITSGKILNASGLPNEVLKDHRYPGSALE 184

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
           +  + +A+D AI+ + L ++FP+  +     +  +    I + N+LL  M      +DG+
Sbjct: 185 EENMLSAQDVAIVTMHLLEDFPEILEITKQTEVDFAGNSIKSFNQLLPGMAKGRAGVDGL 244

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS----QERDQKALELITSFLEKK 291
           KTG T  +G  +V +       ++ V++    S      R ++A  L+    ++ 
Sbjct: 245 KTGTTDLAGHCLVVTSIENGMRLITVILNADGSDKNQNTRFEQANHLLDYVAKRY 299


>gi|188589932|ref|YP_001919969.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188500213|gb|ACD53349.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 438

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 73/284 (25%), Positives = 123/284 (43%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISM--ASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYP 77
           ++ + +++  I FLSI ++S        A P+ ++   +++D +  ++   K  D+   P
Sbjct: 1   MKSHFKIL--IFFLSIFLVSSINVMAASAPPEINAEGSVLMDASTGEILFSKNPDKVLEP 58

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK+MT  +  E        LN ++ V++     + + + L +    T +  +L L+ 
Sbjct: 59  ASTTKVMTAILTLENCD-----LNEEVVVTEDFTKVDGTTIGLLKGDIVTVKDLLLGLLL 113

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND + A    IS S  KFA+LM+ KA +IG  NT +KN SGL D   +TTA D A++
Sbjct: 114 ESGNDAANALACHISSSIDKFAVLMNKKAIEIGAINTHFKNPSGLPDPEHLTTAHDLALI 173

Query: 198 GILLRKN--FPQYYKYFS----IRKFRYRNRIITNHNKLLNK-----MHNIDGIKTGYTR 246
                KN  F +  K  +    I+    R   I N N ++NK            K GYT 
Sbjct: 174 MNEAIKNDKFLELSKVMTYEIPIKNDSSRTIWINNKNHMINKNSMYYYPYTLAGKNGYTT 233

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            S      +       +VA  +      +  +    +       
Sbjct: 234 KSNHTYAIAAENNGHILVASYLNALDKNKNFEDMKTVFNYGFNN 277


>gi|257470787|ref|ZP_05634877.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium ulcerans ATCC
           49185]
 gi|317064992|ref|ZP_07929477.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium ulcerans ATCC
           49185]
 gi|313690668|gb|EFS27503.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium ulcerans ATCC
           49185]
          Length = 376

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 84/298 (28%), Positives = 142/298 (47%), Gaps = 15/298 (5%)

Query: 27  NIQLMGKILFLSIIMISMASEL--HAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKM 83
           N+ L+  +L  S +    +  L     P Y +I++  +K ++   +  + +YP ASLTKM
Sbjct: 6   NVLLLAIVLISSTVFAKDSETLMKEETPSYKAILLGDDKGKIYYSENIDEKYPLASLTKM 65

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MTL + F+ L+   + +  +I VSK +A    S++++KE   FT E  I A    SAN+ 
Sbjct: 66  MTLMVTFDQLEKGNIKMKDKIKVSKKSAQTGGSRIFMKEGDVFTLEDLIKATAIYSANNA 125

Query: 144 STAFGEFIS-GSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDKNQIT-----TARDQAI 196
           + A  E+I  G   KF  +M+ K+  +G++    +   +GL            T R    
Sbjct: 126 AYAIAEYIGKGDVDKFVKMMNKKSADLGLEKELEFYTPAGLPSDMTKKGMDAGTTRGIYK 185

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNR--IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
           L +   K + +Y +  SI++    N    I N N LL +   I GIKTG+    G+NI  
Sbjct: 186 LSLAAAK-YNKYMEIASIKETTIHNGKLKIKNRNLLLGE-EGIYGIKTGHHSKVGYNISV 243

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
                +  I  VV+G PT Q+RD+  L  +  F E+   + + T +  +++   +   
Sbjct: 244 LSDKDNMKIFTVVVGGPTYQKRDESVLNQMEEFYEEYQFR-KLTDKNVSIAKVPVFSG 300


>gi|229074990|ref|ZP_04207992.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18]
 gi|228708047|gb|EEL60218.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18]
          Length = 338

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 136/296 (45%), Gaps = 21/296 (7%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
           ++++   L+   +  ++I++          + AK   S+I+ID N  ++   K +E P  
Sbjct: 3   FLKKFTILLLSFIITALIVLYFYLYVNGPIIQAK---SAILIDANSGEVIYKKNEETPIQ 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            A+L+K+MT YI+ E L   ++ L+  + +S        + + +  K   T    + AL+
Sbjct: 60  SATLSKLMTEYIVLEQLNDGQIQLDESVKISNELFQAETTPMQVTAKDKTTVRDLLHALL 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDKNQI---TTAR 192
               N  + A  E I G+E  F +LM+ KAK++ +   + + N++G +        TTA+
Sbjct: 120 LTGNNRSALALAEHIGGNEDNFTMLMNEKAKQLQLSQPSPFLNSTGANQDTNKQSNTTAK 179

Query: 193 DQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGY 244
           D A L   L K+FP       +    F ++N  + N NK++       K+  +DG++T +
Sbjct: 180 DAAKLATHLVKDFPNVLNMTKLTSYQFTFKNFQVFNTNKMIYSLNENIKLQGVDGLQTSF 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + N   + V + +  D  +++V++          +  +L+    E  +    Q  +
Sbjct: 240 STNGNNSFVGTAKLGDTRLISVILESDEENTTFIETKKLLQYGFEPSSYSALQAFK 295


>gi|229011816|ref|ZP_04168997.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
 gi|228749447|gb|EEL99291.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
          Length = 338

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 138/296 (46%), Gaps = 21/296 (7%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
           ++++   L+   L  ++I++          + AK   S+I+ID N  ++   K +E P  
Sbjct: 3   FLKKITVLLLSFLITALIVLYFYLYVNGPIIQAK---SAILIDTNSGEIVYKKNEETPIQ 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            A+L+K+MT YI  E L   K+ L+  + +S        S + +  K   T    + AL 
Sbjct: 60  SATLSKLMTEYIALEQLNEGKIQLDELVKISNEVFRAETSPIQVTSKDKTTVRDLLHALF 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDKNQI---TTAR 192
               N  + A  E I+G+E  F +LM++KAK++ +   + + NA+G+++       TT+ 
Sbjct: 120 LTGNNRSALALAEHIAGNEDNFTLLMNDKAKQLKLSQPSPFLNATGINNDTNKQSTTTSI 179

Query: 193 DQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGY 244
           D A L   L K+FP       +    F +++  + N NK++       K+  +DG++T +
Sbjct: 180 DVAKLATQLVKDFPDVLNVTKLTSYQFTFKDSKVFNTNKMIYSLNKNIKLQGVDGLQTSF 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + N  ++ V++    D  +++V++          +  +L+    +  +    Q  +
Sbjct: 240 STNGNYSFVSTATRGDTRLISVILDAGDENSTFIETKKLLQYGFDPSSYSALQAFK 295


>gi|71902909|ref|YP_279712.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS6180]
 gi|71802004|gb|AAX71357.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS6180]
          Length = 410

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 133/307 (43%), Gaps = 26/307 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R I L+   LF +   +S   E ++     +I +D+   ++   K  +   P AS++K
Sbjct: 2   IKRLISLVVIALFFAASTVS--GEEYSVTAKHAIAVDLESGKVLYEKDTKEVVPVASVSK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ +   KL+ ++ + +S            S + L +K  +T ++ + AL+  
Sbjct: 60  LLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPL-DKRKYTVKELLSALVVN 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           +AN  + A  E I G+E KF   M  + ++ G+ +    N++GL               D
Sbjct: 119 NANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
                 A D AI+   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIFDGQTIYSYNYMLKGMPCYREGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
             GY++ +G + V +       ++ VV+    S E D    +     L+   +  Q+   
Sbjct: 239 FVGYSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQL 298

Query: 301 KDNLSST 307
            +N    
Sbjct: 299 IENNKPV 305


>gi|229099816|ref|ZP_04230740.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
 gi|228683562|gb|EEL37516.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
          Length = 423

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 59/298 (19%), Positives = 129/298 (43%), Gaps = 28/298 (9%)

Query: 62  NKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPS 116
           +  ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S
Sbjct: 42  DTGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFS 101

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
            +  ++   +T ++   +++  SAN  S A  E ++GSEK F  L ++ AKK+G++   +
Sbjct: 102 NVPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANDHAKKLGLKKYKF 161

Query: 177 KNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN- 221
            NA+GL++ +                 +ARD  IL   +   +P+  +    R   + + 
Sbjct: 162 VNATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKTIITKYPEMLEDTKQRFRNFPDN 221

Query: 222 ----RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                 + N N +L          DG+KTG +  +G+    + +  D  +++V++   + 
Sbjct: 222 HPKPIRMENWNWMLPGAAFAYEGSDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSM 281

Query: 274 QERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
            ER  ++  LI         +  +  + + +S    K   +    ++  +   K   K
Sbjct: 282 DERFTESRALIEYGFNSFEKQKLKIDKNNTISVVKGKADQVTVAPEKEITVIAKKGDK 339


>gi|171914424|ref|ZP_02929894.1| D-alanyl-D-alanine carboxypeptidase [Verrucomicrobium spinosum DSM
           4136]
          Length = 353

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 67/278 (24%), Positives = 127/278 (45%), Gaps = 16/278 (5%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           Y S Y   N      +LF S   +  A  + A+   S I+++ +   +   +  D  R  
Sbjct: 85  YPSPYGAPNYGAPQTMLFSSGSNVGSAPPIRAE---SFILVNADTGAVIAARNADTQRGA 141

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS  K++T  I+ E       +L+ ++ ++ +     PSKL ++    +T    ++A + 
Sbjct: 142 ASTQKILTALIVAEAG-----NLDQRVRIAPSDVVVEPSKLGVRPGEVYTRRDLLIAFLV 196

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S+NDV+       +GS + FA  M+ +A+ +G  N+ + N  GL    Q +TARD + +
Sbjct: 197 KSSNDVANVLARDNAGSVEAFARKMNARARSLGAVNSYFTNPHGLTGGGQHSTARDLSRI 256

Query: 198 GILLRKNFPQYYKYFSIR--KFRYRNR---IITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
                 N P        R   F + N     + N N++L +M   +G+KTGYT  +G  +
Sbjct: 257 AWAAYNN-PVVRDAVRRRYYTFTFNNGRRVTLENTNEILGRMAECNGMKTGYTVAAGRCL 315

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +++       ++ V +G  T    D   + ++   L++
Sbjct: 316 ISTAHSGRKDVILVQLGTRTKYIWDDGMV-MMRWGLQR 352


>gi|50913625|ref|YP_059597.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS10394]
 gi|50902699|gb|AAT86414.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS10394]
          Length = 410

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 133/307 (43%), Gaps = 26/307 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R I L+   LF +   +S   E ++     +I +D+   ++   K  +   P AS++K
Sbjct: 2   IKRLISLVVIALFFAASTVS--GEEYSVTAKHAIAVDLESGKVLYEKDAKEVVPVASVSK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ +   KL+ ++ + +S            S + L +K  +T ++ + AL+  
Sbjct: 60  LLTTYMVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPL-DKRKYTVKELLSALVVN 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           +AN  + A  E I G+E KF   M  + ++ G+ +    N++GL               D
Sbjct: 119 NANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
                 A D AI+   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIFDGQTIYSYNYMLKGMPCYREGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
             GY++ +G + V +       ++ VV+    S E D    +     L+   +  Q+   
Sbjct: 239 FVGYSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQL 298

Query: 301 KDNLSST 307
            +N    
Sbjct: 299 IENNKPV 305


>gi|58337864|ref|YP_194449.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus acidophilus
           NCFM]
 gi|58255181|gb|AAV43418.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus acidophilus
           NCFM]
          Length = 432

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/318 (24%), Positives = 136/318 (42%), Gaps = 37/318 (11%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKT 109
           S+I ID N  Q+   K  D+    AS+TK++T+Y+    +++KKL  N ++     + K 
Sbjct: 50  SAIAIDSNSGQILYAKNADKTLPIASMTKLITVYLTLNAIKNKKLSWNQKVKPTASIVKV 109

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A     S + LK    +T  Q   A +  SAN  +   G+ I+GS+KKF   M  + KK 
Sbjct: 110 ANNAEYSNVPLKMGHSYTIRQLYQATLIESANGAAMLLGQTIAGSQKKFIDQMRAQVKKW 169

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++     A GL + N                 +A+D AI+G  L K +P+      + 
Sbjct: 170 GIEDAEIYTACGLPNGNVGKDAYPGVNKNAENTMSAKDMAIVGQHLLKEYPEILDTTKLA 229

Query: 216 KFRYRN----RIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              +++      + N N +L  +      + +DG+KTG T  +G   + ++ +    ++ 
Sbjct: 230 HLDFKDGNKTTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVEHNGARLIT 289

Query: 266 VVMGMP----TSQERDQKALELITSFLEKK----TLKHQQTHRKDNLSSTSLKKSLMIKK 317
           VVMG      T   R  +  +L++    K          Q +   ++  T  K +     
Sbjct: 290 VVMGARHQDGTDPSRFIQTKKLMSFIFNKYRPVTMTAGSQINGAKSIKVTDGKDATTNIG 349

Query: 318 LKRTYSQFKKIDAKAHST 335
           LK   + +   D K  + 
Sbjct: 350 LKNKTTIWDPADGKTLTA 367


>gi|269925806|ref|YP_003322429.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269789466|gb|ACZ41607.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 334

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 64/302 (21%), Positives = 119/302 (39%), Gaps = 43/302 (14%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKY---------------SSIVIDVNKNQMT-GFK 70
           +   +  +L ++ I++ +++   A P                 S++V+D    ++   +K
Sbjct: 15  SCLFIVFLLLIAGIIVPISTANAALPASNAVVLPYPEPEITAKSALVMDRRTGKILWAYK 74

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
            ++    AS  KMMT  +  +Y        N  I V         S  YL+     T   
Sbjct: 75  PNKKLAMASTAKMMTAILALQYADP-----NEVIKVYPRDL-VGGSTAYLRAGEKLTLTD 128

Query: 131 GILALITRSANDVSTAFGEFIS---------GSEKKFAILMSNKAKKIGMQNTIYKNASG 181
            + A +  S ND +    +++             + F   M+ KA ++G+ +T+++  +G
Sbjct: 129 LLKAALIPSGNDAAVTIADYVGRKYLGGVGDNGIQVFVDEMNAKAHELGLDHTVFRTPNG 188

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR--------IITNHNKLLNK 233
                Q +TA D A LG  L  N P         + R             + + N LL  
Sbjct: 189 FDAPGQYSTALDLAKLGRELLDN-PLLSSIVGTYRTRVIGHLGGKPVYHTLVSTNDLLPI 247

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
              + GIKTG T  +G N+V+ ++  +  ++AVV+G   SQ+R      ++       +L
Sbjct: 248 YPGMQGIKTGTTPAAGENLVSYVKRGNIELIAVVLG---SQDRFADTRAILDWMFSSYSL 304

Query: 294 KH 295
             
Sbjct: 305 AE 306


>gi|227904514|ref|ZP_04022319.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus acidophilus ATCC
           4796]
 gi|227867723|gb|EEJ75144.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus acidophilus ATCC
           4796]
          Length = 432

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 77/318 (24%), Positives = 136/318 (42%), Gaps = 37/318 (11%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKT 109
           S+I ID N  Q+   K  D+    AS+TK++T+Y+    +++KKL  N ++     + K 
Sbjct: 50  SAIAIDSNSGQILYAKNADKTLPIASMTKLITVYLTLNAIKNKKLSWNQKVKPTASIVKV 109

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A     S + LK    +T  Q   A +  SAN  +   G+ I+GS+KKF   M  + KK 
Sbjct: 110 ANNAEYSNVPLKMGHSYTIRQLYQATLIESANGAAMLLGQTIAGSQKKFIDQMRAQVKKW 169

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++     A GL + N                 +A+D AI+G  L K +P+      + 
Sbjct: 170 GIEDAEIYTACGLPNGNVGKDAYPGVNKNAENTMSAKDMAIVGQHLLKEYPEILDTTKLA 229

Query: 216 KFRYRN----RIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              +++      + N N +L  +      + +DG+KTG T  +G   + ++ +    ++ 
Sbjct: 230 HLDFKDGNKTTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVEHNGARLIT 289

Query: 266 VVMGMP----TSQERDQKALELITSFLEKK----TLKHQQTHRKDNLSSTSLKKSLMIKK 317
           VVMG      T   R  +  +L++    K          Q +   ++  T  K +     
Sbjct: 290 VVMGARHQDGTDPSRFIQTKKLMSFIFNKYRPVTMTAGSQINGAKSIKVTDGKDATTNIG 349

Query: 318 LKRTYSQFKKIDAKAHST 335
           LK   + +   D K  + 
Sbjct: 350 LKNKTTIWDPADGKTLTA 367


>gi|196040350|ref|ZP_03107651.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           NVH0597-99]
 gi|196028835|gb|EDX67441.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           NVH0597-99]
          Length = 338

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 132/290 (45%), Gaps = 26/290 (8%)

Query: 34  ILFLSIIMISM----------ASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTK 82
           IL LS ++ ++             + AK   S+I+ID N  ++   K +E     A+L+K
Sbjct: 9   ILLLSFVITALIVLYFYLYVNGPIVQAK---SAILIDANSGEVVYKKNEETSIQSATLSK 65

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT YI+ E L    + L+  + +S        S + +  K   T    +  L+    N 
Sbjct: 66  LMTEYIVLEQLDKGNIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHTLLLTGNNR 125

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGM-QNTIYKNASGLHDKNQI---TTARDQAILG 198
            + A  E I+G+E KF  LM+ KAK + + Q++ + NA+G+++       TTA + A L 
Sbjct: 126 SALALAEHIAGNEDKFTQLMNEKAKHLKLSQSSPFLNATGMNNDTNKLSTTTAIEVAKLA 185

Query: 199 ILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGYTRNSGF 250
             L  +FP       +    F +++  + N NK++       K   +DG++T ++ N  +
Sbjct: 186 TQLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKHQGVDGLQTSFSTNGNY 245

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + V++ +  D  +++V++          +  +L+    +  +    Q  +
Sbjct: 246 SFVSTAKQGDTRLISVILDAENENSTFIETKKLLQYGFDPSSYSALQAFK 295


>gi|299538369|ref|ZP_07051652.1| penicillin-binding protein 5* precursor [Lysinibacillus fusiformis
           ZC1]
 gi|298725956|gb|EFI66548.1| penicillin-binding protein 5* precursor [Lysinibacillus fusiformis
           ZC1]
          Length = 356

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 71/327 (21%), Positives = 134/327 (40%), Gaps = 31/327 (9%)

Query: 28  IQLMGKILFLSIIMISMASELH-AKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMT 85
           ++L    LF+ I+++ M  +   A+      V+D    ++  G   DE    ASLTK+ T
Sbjct: 2   LRLFRLTLFMIIVLMVMLPQTSLARGGSGYAVLDGETGRILIGSNSDERLPIASLTKIWT 61

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
             +  E        L  ++ +S  AA    S +YL+     T E  +  L+ RS ND +T
Sbjct: 62  ALVAIENSD-----LQEEVVISPKAAMAEGSSIYLQAGEKVTVETLLYGLMLRSGNDAAT 116

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN- 204
           A  E + GS + F  LM+ +A   G+ NT++ N SGLH    +++ARD A +  L  +N 
Sbjct: 117 ALAEHVGGSVEGFVKLMNERAVIAGLTNTVFMNPSGLHHDEHLSSARDTAEMLRLALQNK 176

Query: 205 -FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNI----------------------DGIK 241
            F +       R       +  N ++LL +   +                         K
Sbjct: 177 TFEKIASTVLYRANTVNGMLWENKHRLLREGSGMAADIDDETEQPVSSLKSATGTAFAGK 236

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRK 301
           TG+T+ +G  + T+ +      + V +         +     +      +T+  +  +  
Sbjct: 237 TGFTKVAGRTLATAFQKDGQICIVVTLNESDDWNVHRGLSNKVWQDYSLETVVKKGKYNV 296

Query: 302 DNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           +   +  L++ + ++  K    Q +++
Sbjct: 297 NKKLAIRLQEPVRLQLNKEEKEQVRQV 323


>gi|153811609|ref|ZP_01964277.1| hypothetical protein RUMOBE_02001 [Ruminococcus obeum ATCC 29174]
 gi|149832350|gb|EDM87435.1| hypothetical protein RUMOBE_02001 [Ruminococcus obeum ATCC 29174]
          Length = 414

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 76/254 (29%), Positives = 128/254 (50%), Gaps = 24/254 (9%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+I++D+    +   K  D+ +YPAS+TK+MT  +  E     KL+ + +  ++ +AA  
Sbjct: 75  SAILVDMFTGAVLYSKNADKTQYPASITKIMTALLGCE-----KLNPSQKFAMTASAARS 129

Query: 114 ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
               N S +Y      FT EQ ++A++ +SAN+++ A  E  SGS KKF   M+ KA+++
Sbjct: 130 ITETNSSSIYADTDEEFTIEQALMAVMLQSANEMTLAVAELTSGSTKKFVEQMNLKARQL 189

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-------NR 222
           G  NT + N +GL D+   TTA D A +      N P + K+ S + +           R
Sbjct: 190 GCTNTHFNNPNGLPDEIHYTTASDMAKIARAAWFN-PTFRKFASTQYYEIPPTNKFAETR 248

Query: 223 IITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
            + NH+K++       + + G KTGYT  +G  +VT  +  +  +V+VV+        D 
Sbjct: 249 YLLNHHKMMKNQAYAYNGVLGGKTGYTEAAGNTLVTYAKNDNTYLVSVVLQSVNGAYSDT 308

Query: 279 KALELITSFLEKKT 292
           KA  L+       +
Sbjct: 309 KA--LLDYGFNNFS 320


>gi|167766432|ref|ZP_02438485.1| hypothetical protein CLOSS21_00937 [Clostridium sp. SS2/1]
 gi|317498290|ref|ZP_07956589.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|167711841|gb|EDS22420.1| hypothetical protein CLOSS21_00937 [Clostridium sp. SS2/1]
 gi|291560872|emb|CBL39672.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
           SSC/2]
 gi|316894499|gb|EFV16682.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 374

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/278 (24%), Positives = 126/278 (45%), Gaps = 28/278 (10%)

Query: 42  ISMASELHAK-PKY---SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSK 96
           ++ A +  AK PK    S IVID    ++   K+ D+  YPAS+TK++T  +  E  +  
Sbjct: 35  VATAEKTTAKQPKIYGRSGIVIDAKSGKILYAKKVDDRHYPASITKILTTLVAIENNKD- 93

Query: 97  KLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
              L  ++  S  A        + + +K          + A++  SAN+      E  +G
Sbjct: 94  ---LYDEVTFSSYAVNSIEPGSTHIGIKAGEKIPLIDVLNAIMLESANEACNGAAEHTAG 150

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           + KKF  LM+ K K++G   + +   +GLHD +   TARD A +     +N  + ++Y +
Sbjct: 151 TTKKFVELMNKKVKELGCTGSHFVTTNGLHDDDHYVTARDMAKISKAALEN--ETFRYVA 208

Query: 214 IRKFRY--------RNRIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
            +   Y          + + NH+K++ +       ++G KTGYT  +G  +VT  +  D 
Sbjct: 209 CKPNYYIAPTNKDKHGKELWNHHKMVKRTMFNYDGVEGGKTGYTTKAGGTLVTFAKRGDQ 268

Query: 262 PIVAVVMGMPTSQERDQKALELITSFLEK-KTLKHQQT 298
            ++ V +      E  +  ++++       KT+   +T
Sbjct: 269 ELIVVDL-CAHGYELYEDTIKMLNYGFNNYKTIAPFKT 305


>gi|223985877|ref|ZP_03635915.1| hypothetical protein HOLDEFILI_03221 [Holdemania filiformis DSM
           12042]
 gi|223962143|gb|EEF66617.1| hypothetical protein HOLDEFILI_03221 [Holdemania filiformis DSM
           12042]
          Length = 335

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/309 (21%), Positives = 125/309 (40%), Gaps = 14/309 (4%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYII 89
           M KI    + +    + LHA    S IVI  N   +     + E R  AS++K+MT  + 
Sbjct: 1   MKKIAVFFLTLTLFWTPLHA--DGSYIVISGNDGNVLEAENEHEVRSIASISKIMTAVVA 58

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            E           Q  +         S +++++    +    +  ++ +S ND + A   
Sbjct: 59  LENGD-----YIDQWIIGDEVTNVTGSMIWIQKGQQVSMRSLLYGMMLKSGNDAAVAIAH 113

Query: 150 FISG-SEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILGILLRKNFP 206
            + G S +KF  +M+ KA  +GM++T + N +G+   ++   +TA D A+L        P
Sbjct: 114 RVGGGSVEKFIQMMNEKAVALGMKDTEFHNPNGMDVEEEGNYSTAYDMAVLMQYAM-TLP 172

Query: 207 QYYKYFSIRKFR-YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           Q+ +  + + +         N NKLL+      G KTG+T  +G  +VT+ +  +   + 
Sbjct: 173 QFREIVATQYYTSEWGSRWKNSNKLLSNFEFCTGGKTGFTNKAGETLVTAAQNGELEYIV 232

Query: 266 VVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQF 325
           V + +P      ++         E  TL+      ++   +  L K   +   K    Q 
Sbjct: 233 VTLAVPDRWTFHEQKYRKAMEMCELITLQPAGPIEQEGYIAQ-LDKPFEVVVKKEEAGQG 291

Query: 326 KKIDAKAHS 334
           +       S
Sbjct: 292 QYTMTLNKS 300


>gi|145225445|ref|YP_001136123.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium gilvum
           PYR-GCK]
 gi|315445798|ref|YP_004078677.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1]
 gi|145217931|gb|ABP47335.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium gilvum
           PYR-GCK]
 gi|315264101|gb|ADU00843.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1]
          Length = 407

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 61/266 (22%), Positives = 105/266 (39%), Gaps = 18/266 (6%)

Query: 37  LSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFE 91
           LS   +  A      P      + +V D++   +   +    R+ PAS+ K++T     +
Sbjct: 75  LSGCGVITAPGTPPVPGDVSAEAWLVADLDSGDVIAARDPHGRHRPASIIKVLTAM---Q 131

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            L+   L L   +P +   A Q  +K+ + E   +T    +  L+  S ND + A    +
Sbjct: 132 ALRD--LPLMKTVPGTPEDAAQEGTKVGVGEGGVYTVNDLLHGLLMYSGNDAAHALAMQM 189

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            G +      ++  A+K+G ++T     SGL      T+  D  +       N P +   
Sbjct: 190 GGMDTA-LNKINVLAQKLGARDTRVATPSGLDGPGMSTSVYDMGLFYRYAWHN-PVFADI 247

Query: 212 FSIRKFRYRNR-----IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
            + R  ++  R      I N NKLL       G KTGYT ++G   V +       +VAV
Sbjct: 248 VATRATQFPGREGAGYPIENDNKLLANYPGALGGKTGYTDDAGQTFVGAAERDGRRLVAV 307

Query: 267 VM-GMPTSQERDQKALELITSFLEKK 291
           +M G        ++A  L+       
Sbjct: 308 LMRGTRQPIAPWEQAARLLDYGFATA 333


>gi|322411635|gb|EFY02543.1| putative D,D-carboxypeptidase, penicillin-binding protein
           [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 409

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 134/294 (45%), Gaps = 28/294 (9%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKM 83
           +R   L   +L  S +  ++ +         +IV++ +  ++   K  + P   ASLTK+
Sbjct: 3   KRWAILFFVVLACSGLGKTVLAADFQVGAEHAIVVEADSGRVLYEKDAKTPDAIASLTKL 62

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +T+Y++ + ++S +L L+ Q+ +S  A       + S +   +K Y + +  + A +  S
Sbjct: 63  VTVYLVLDKVKSGQLQLSDQVNLSDYAFELTTDSSLSNVPFDQKAY-SVQDLLKATLVAS 121

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-------------- 185
           +N  + A  E ++GSE  F   M  +  + G+ +    NASGL ++              
Sbjct: 122 SNSAAIALAEKVAGSEPNFVAQMRIQLSRWGITSGKILNASGLPNEVLKDHRYPGSALEE 181

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIK 241
             I +ARD AI+ + L ++FP+  +     +  +    I + N+LL  M      +DG+K
Sbjct: 182 ENILSARDIAIVTMHLLEDFPEILEITKQTEVDFAGNSIHSFNQLLLGMAKGRAGVDGLK 241

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS----QERDQKALELITSFLEKK 291
           TG T  +G  +V +       ++ V++    S      R ++A  L+    ++ 
Sbjct: 242 TGTTDLAGHCLVVTSIENGMRLITVILNADGSDKNQNTRFEQANRLLDYVAKRY 295


>gi|307243482|ref|ZP_07525633.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus
           stomatis DSM 17678]
 gi|306493126|gb|EFM65128.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus
           stomatis DSM 17678]
          Length = 655

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 82/345 (23%), Positives = 148/345 (42%), Gaps = 43/345 (12%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------IVIDVNKNQMTGFKQD-E 73
           ++R   ++   L LSI +++ AS +    + S          +++D N  Q+   K   +
Sbjct: 1   MKRTTSVLSA-LTLSIGLLAPASLISHADQTSDLDTLKSKYMVLMDYNSGQVLYKKNATQ 59

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
             YPAS TK+ T + + +  ++    L+  + + K       S +YL+    FT  + + 
Sbjct: 60  KMYPASTTKIWTAFCVLKKAKN----LDELVEI-KDIPQIEGSSMYLENGEKFTVRELLE 114

Query: 134 ALITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           +L+  S+NDV+    +   G + + F   M+ +AKK G  NT + N  GL D +  TTA 
Sbjct: 115 SLLIHSSNDVAYVLAKHFGGGNPQDFINYMNEEAKKFGASNTHFNNPHGLPDTDHYTTAM 174

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYR-------NRIITNHNKLLN------------- 232
           D AIL  +   + P   +   ++   ++        R + N NK L              
Sbjct: 175 DMAILSRVAYGD-PTISEIVKMKSVSFKASDRIKVERNLVNSNKFLTSSDTIDHKGKTIP 233

Query: 233 -KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
            K   +DGIKTG+T ++G  +V++ +  +  ++A V   P        +  LI   L+  
Sbjct: 234 IKYDIVDGIKTGFTDDAGNCLVSTAKKGNVRLMANVFFAPGGSL-YHDSRTLIDYGLDNY 292

Query: 292 TLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA-KAHST 335
             K    ++ D++      K     K+K   +    I A K  S+
Sbjct: 293 --KSITIYKADDIKGEKSVKFARPGKIKYKLANDYSITAMKTDSS 335


>gi|41409546|ref|NP_962382.1| hypothetical protein MAP3448 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41398377|gb|AAS05998.1| hypothetical protein MAP_3448 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 394

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 62/266 (23%), Positives = 108/266 (40%), Gaps = 19/266 (7%)

Query: 37  LSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFE 91
           L    I  A      P      + +V D++   +   K    R+ PAS+ K+    +   
Sbjct: 61  LGSCGIVAAPNTPPLPGDVSAEAWLVADLDSGAVIAAKDPHGRHRPASIIKV---LVAMA 117

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            + +  L+LN  +P +   A    +K+ ++E   FT  Q +  L+  S ND + A    +
Sbjct: 118 AINT--LNLNKAVPGTADDAAAEGTKVGVEEGGVFTVNQLLHGLLMHSGNDAAHALAMQL 175

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            G ++     ++  A K+G Q+T     SGL      T+A D  +      +N P +   
Sbjct: 176 GGMQQA-LEKINVLAAKLGGQDTRVATPSGLDAPGMSTSAYDIGLFYRYAWQN-PTFADI 233

Query: 212 FSIRKFRYRNRI------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            + R F +          + N N+LL K     G KTGYT ++G   V +  +    +VA
Sbjct: 234 VATRTFDFPGHGDHPGYELENDNQLLYKYPGALGGKTGYTDDAGQTFVGAANHDGRRLVA 293

Query: 266 VVM-GMPTSQERDQKALELITSFLEK 290
           V++ G        ++A  L+      
Sbjct: 294 VLLHGTRQPIAPWEQAAHLLDYGFAT 319


>gi|209558811|ref|YP_002285283.1| Penicillin-binding protein 7 precursor (PBP-7) (D-alanyl-D-alanine-
           endopeptidase) [Streptococcus pyogenes NZ131]
 gi|209540012|gb|ACI60588.1| Penicillin-binding protein 7 precursor (PBP-7) (D-alanyl-D-alanine-
           endopeptidase) [Streptococcus pyogenes NZ131]
          Length = 395

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/307 (21%), Positives = 133/307 (43%), Gaps = 26/307 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R I L+   LF +   +S   E ++     +I +D+   ++   K  +   P AS++K
Sbjct: 2   IKRLISLVVIALFFAASTVS--GEEYSVTAKHAIAVDLESGKVLYEKDAKEVVPVASVSK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ +   KL+ ++ + +S            S + L +K  +T ++ + AL+  
Sbjct: 60  LLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPL-DKRKYTVKELLSALVVN 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           +AN  + A  E I G+E KF   M  + ++ G+ +    N++GL               D
Sbjct: 119 NANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
                 A D A++   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENCFCATDLAVIARHLLLEFPEVLKLSSKSSTIFAGQTIYSYNYMLKGMPCYREGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
             GY++ +G + V +       ++ VV+    S E D    +     L+   +  Q+   
Sbjct: 239 FVGYSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQL 298

Query: 301 KDNLSST 307
            +N    
Sbjct: 299 IENNKPV 305


>gi|118466287|ref|YP_883443.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium 104]
 gi|118167574|gb|ABK68471.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium 104]
          Length = 419

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 62/266 (23%), Positives = 108/266 (40%), Gaps = 19/266 (7%)

Query: 37  LSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFE 91
           L    I  A      P      + +V D++   +   K    R+ PAS+ K+    +   
Sbjct: 86  LGSCGIVAAPNTPPLPGDVSAEAWLVADLDSGAVIAAKDPHGRHRPASIIKV---LVAMA 142

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            + +  L+LN  +P +   A    +K+ ++E   FT  Q +  L+  S ND + A    +
Sbjct: 143 AINT--LNLNKAVPGTADDAAAEGTKVGVEEGGVFTVNQLLHGLLMHSGNDAAHALAMQL 200

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            G ++     ++  A K+G Q+T     SGL      T+A D  +      +N P +   
Sbjct: 201 GGMQQA-LEKINVLAAKLGGQDTRVATPSGLDAPGMSTSAYDIGLFYRYAWQN-PTFADI 258

Query: 212 FSIRKFRYRNRI------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            + R F +          + N N+LL K     G KTGYT ++G   V +  +    +VA
Sbjct: 259 VATRTFDFPGHGDHPGYELENDNQLLYKYPGALGGKTGYTDDAGQTFVGAANHDGRRLVA 318

Query: 266 VVM-GMPTSQERDQKALELITSFLEK 290
           V++ G        ++A  L+      
Sbjct: 319 VLLHGTRQPIAPWEQAAHLLDYGFAT 344


>gi|163940330|ref|YP_001645214.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
 gi|163862527|gb|ABY43586.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
          Length = 338

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 138/296 (46%), Gaps = 21/296 (7%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
           ++++   L+   L  ++I++          + AK   S+I+ID N  ++   K +E P  
Sbjct: 3   FLKKITVLLLSFLITALIVLYFYLYVNGPIIQAK---SAILIDTNSGEIVYKKNEETPIQ 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            A+L+K+MT YI  E L   K+ L+  + +S        S + +  K   T    + AL 
Sbjct: 60  SATLSKLMTEYIALEQLNEGKIQLDELVKISNEVFRAETSPIQVTSKDKTTVRDLLHALF 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDKNQI---TTAR 192
               N  + A  E I+G+E  F +LM++KAK++ +   + + NA+G+++       TT+ 
Sbjct: 120 LTGNNRSALALAEHIAGNEDNFTLLMNDKAKQLKLSQPSPFLNATGINNDTNKQSTTTSI 179

Query: 193 DQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGY 244
           D A L   L K+FP       +    F +++  + N NK++       K+  +DG++T +
Sbjct: 180 DAAKLATQLVKDFPDVLNVTKLTSYQFTFKDSKVFNTNKMIYSLNKNIKLQGVDGLQTSF 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + N  ++ V++    D  +++V++          +  +L+    +  +    Q  +
Sbjct: 240 STNGNYSFVSTATRGDTRLISVILDAGDENSTFIETKKLLQYGFDPSSYSALQAFK 295


>gi|227524973|ref|ZP_03955022.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus hilgardii
           ATCC 8290]
 gi|227087885|gb|EEI23197.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus hilgardii
           ATCC 8290]
          Length = 421

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 69/282 (24%), Positives = 125/282 (44%), Gaps = 28/282 (9%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSK 96
           S    ++++        S+I +D +  Q+   K    P   AS++K+MT+YI+ + +Q  
Sbjct: 24  SAYAATVSTSQPVIYAKSAIAVDADTGQILYEKNAHQPLAIASISKLMTVYIVQKQIQEG 83

Query: 97  KLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           KL  N Q+ +S   A        + + LK    +     + A +  SAN  + A G+ +S
Sbjct: 84  KLSWNDQVKISPAVAKLSTASGLTNVPLKSGKSYKVRDLLKAALIVSANAAAIALGQKVS 143

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HDKNQITTARDQAILG 198
           G+ + FA  M+  A+ +G+++  + NA+GL               +   + +A+D A+L 
Sbjct: 144 GNAQNFADKMTKTARGLGIKDAKFYNAAGLTNKLTGSLMLKKDSPNAENLMSAKDIALLA 203

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-----KMHNIDGIKTGYTRNSGFNIV 253
             L ++FP   K     +  +       HN+LL+     K   ++G+KTG +  +G    
Sbjct: 204 SRLEESFPGLTKITRQTQMNFSGNSYAGHNQLLDDRQIAKGAVVNGLKTGTSDEAGACFA 263

Query: 254 TSLRYKDDPIVAVVMGM----PTSQERDQKALELITSFLEKK 291
            S  Y    IV VV+G      T   R  +  +L+     K+
Sbjct: 264 GSTTYHGRRIVTVVLGARNNSATDPARFIQTAKLMGIVFHKQ 305


>gi|289422674|ref|ZP_06424514.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus
           anaerobius 653-L]
 gi|289156853|gb|EFD05478.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus
           anaerobius 653-L]
          Length = 423

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 87/329 (26%), Positives = 152/329 (46%), Gaps = 37/329 (11%)

Query: 36  FLSI---IMISMASELHAKPKYS------SIVIDVNKNQMTGFKQD-EPRYPASLTKMMT 85
           F+SI   ++I ++    A  ++S      +IV+D   +++   K    P   ASL+KMMT
Sbjct: 13  FVSISLSLLIGLSPRSMAYTRFSDRNSRHAIVVDTKSDRIVYEKDSLTPTAMASLSKMMT 72

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           L I F+ L+++K+ ++ Q+ +  +   ++ + + L E      +  + +++  SAND + 
Sbjct: 73  LLITFDDLKARKVSMHDQVKILASDVNRDGTNMKLNEGDIVGLDVLLDSMMIISANDSAL 132

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------DKNQITTARDQA 195
           A    + G  K F   M++KA +IGM  T++ N +GL                T ARD A
Sbjct: 133 AIARHVGGDYKTFVKRMNDKASEIGMTKTVFYNPNGLPIYGEKYGKKITYENTTCARDVA 192

Query: 196 ILGILLRKNFP-QYYKYFSIRKFRYRNRII--TNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           IL   L  N+  +     S ++F    + I   N N +L      DG+KTG+T  +G+ +
Sbjct: 193 ILSKFLYDNYEKELTNITSKKRFVNTKKQIDEENTNPILPLFKESDGLKTGFTDKAGYCL 252

Query: 253 VTSLRYK-------DDPIVAVVMGMPTSQERDQKA---LELITSFLEKKTLKHQQ----T 298
             S R         D+ ++ V MG P+ + R   A   L+ IT   + K L  +     +
Sbjct: 253 AYSSRTNRGGENDVDNRLIGVSMGAPSKEARRDSAYNTLDFITQKYKTKNLYKKGEVLAS 312

Query: 299 HRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
              + +  T L     I  +KR   +FK+
Sbjct: 313 KNINGMIKTDLCPDENISIIKRQDEKFKQ 341


>gi|168334024|ref|ZP_02692243.1| D-alanyl-D-alanine carboxypeptidase [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 426

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 129/287 (44%), Gaps = 27/287 (9%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKM 83
           ++ I++M  +  L    I +A E+      ++I++D     +   K      YPAS+TK+
Sbjct: 3   KQLIKIMLCVFLLIFPKICIAQEVPKINAEAAILMDAKTGTILYEKNAYNRYYPASITKL 62

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSA 140
           MT Y+  ++     L+ N  I  S  A T    + S++ ++E      +Q + AL+  SA
Sbjct: 63  MTAYLAIQH-----LNPNDYITFSNHAVTSIDSDSSRIGMREGEKLLVDQALHALLLDSA 117

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           NDV+ A GE +SG+ + FA LM+  A   G   T + N  GLH+    TT  D A++   
Sbjct: 118 NDVANALGEAVSGTTENFAQLMTKTAHDFGATATNFANPHGLHNSKHYTTPYDMALITKA 177

Query: 201 LRKNFPQYY-KYFSIRKFRYRNRIITNH-------NKLLNKM-------HNIDGIKTGYT 245
           +  +  +Y  +      ++  +  ++N        + L+N +        ++   KTGYT
Sbjct: 178 IYND--EYLREIMDTPTYQIPSTNLSNKTIYLSQSHALMNPIRDSQRYREDVILGKTGYT 235

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
             +G  +VT  +  +  ++ V+M     Q        L+    +  T
Sbjct: 236 TPAGNTLVTVGKRGEVELIVVIMKG-HLQNYYNDTNALLDYGFKSYT 281


>gi|229489552|ref|ZP_04383415.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus erythropolis
           SK121]
 gi|229323649|gb|EEN89407.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus erythropolis
           SK121]
          Length = 429

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 64/318 (20%), Positives = 119/318 (37%), Gaps = 25/318 (7%)

Query: 37  LSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
             +++   A  L A       ++ D    ++   K    RY PAS  KM+   +  + L 
Sbjct: 90  CGVVLPDGAPPLPADIAASGWVLADAETGEVLAAKDPHGRYRPASTIKMLLALVALDELD 149

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
                L+T+I  +   A    S + + +   +T  Q +  L+  S ND + A    + G 
Sbjct: 150 -----LDTEITATAEDADAEGSAVGIGKGGKYTNRQLMQGLVMASGNDAAHALARQLGGD 204

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN---------- 204
                  M+  A ++G  +T     SGL      +++ D A++     +N          
Sbjct: 205 AAA-VSKMNALAAELGALDTRTATPSGLDGPGMSSSSYDLAVIFHTALQNPTFAGLIHTE 263

Query: 205 ---FPQYYKYFSIRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
              FP + K  +I   + R    + N N+LL       G KTG+T ++    V +     
Sbjct: 264 TVEFPGFPKDPTIPDDQDRPGFTLANDNQLLYNYDGALGGKTGFTDDARHTYVGAAERNG 323

Query: 261 DPIVAVVMGMPTSQER-DQKALELITSF--LEKKTLKHQQTHRKDNLSSTSLKKSLMIKK 317
             ++  +MG      R  ++A  L+     L   T     T R  + +S  + ++     
Sbjct: 324 RKLLVTLMGGEAKPIRPWEQAARLLDYGYALPASTTVGSLTDRSTDDASPDVTRTPSAAA 383

Query: 318 LKRTYSQFKKIDAKAHST 335
                +     DA++ +T
Sbjct: 384 PGSISAAPTATDAESDTT 401


>gi|257440859|ref|ZP_05616614.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium
           prausnitzii A2-165]
 gi|257196699|gb|EEU94983.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium
           prausnitzii A2-165]
          Length = 313

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 61/237 (25%), Positives = 99/237 (41%), Gaps = 22/237 (9%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKTA 110
           +I++  +  ++   K  D   YPAS+TKMMT  +  E        L+T +     +    
Sbjct: 62  AILLRADSGEVLAEKDADSTIYPASMTKMMTALLAIEANPD----LDTPVTLPEEIFPAL 117

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             QN S    +     T    +   +  S  +   A    +SGSE+ FA  M+ KA ++G
Sbjct: 118 QAQNASLAGFQAGETATVRDLLYGAMLPSGAECCEALAREVSGSEEAFAARMNQKAAELG 177

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NRIIT 225
           M  T + N +GLHD   ++T RD A L     +N   + K F+  ++         +  T
Sbjct: 178 MTGTHFCNPTGLHDPEHVSTVRDMARLTEAALQN-ETFRKLFTTERYTVPATNCHPQGFT 236

Query: 226 NHNKLLNKMHN-------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
            H+ LL+++         I G KTGYT  +G  + +    K    + V  G      
Sbjct: 237 MHSTLLSQLDGTELHRGRILGGKTGYTGEAGLCLASLAEVKGREYILVTAGAGGDHS 293


>gi|269102001|ref|ZP_06154698.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161899|gb|EEZ40395.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 285

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 1/172 (0%)

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           ++L+             +I  S ND   A  E ++GS++ F  LM+  AK +GM++T Y 
Sbjct: 1   MFLEVGKTVKVSDLNRGIIVDSGNDACVAMAEHVAGSQESFVDLMNAWAKNVGMKSTHYA 60

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHN 236
           N  GL + +  TT  D ++L   + ++ P  +K +S + F Y      N N LL  K  N
Sbjct: 61  NVHGLDNPDLYTTPYDLSLLARAIIRDTPNEFKIYSEKSFTYNGITQYNRNGLLWDKSLN 120

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +DG+KTG+T N+G+++V++       +++VVMG  +   R  ++ +L+    
Sbjct: 121 VDGMKTGHTNNAGYSLVSTATEGKMRLISVVMGTKSPNARKAESKKLLNYGF 172


>gi|328958772|ref|YP_004376158.1| D-alanyl-D-alanine carboxypeptidase DacA [Carnobacterium sp. 17-4]
 gi|328675096|gb|AEB31142.1| D-alanyl-D-alanine carboxypeptidase DacA [Carnobacterium sp. 17-4]
          Length = 439

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 80/353 (22%), Positives = 146/353 (41%), Gaps = 50/353 (14%)

Query: 33  KILFLSIIMISMASELHAKPKYSSIVIDV-------------NKNQMTGFKQ-DEPRYPA 78
             LF++++++   S L A    S+  I+                 ++   +  DE    A
Sbjct: 8   STLFVTMLLLGTFSPLMASTTVSAATIEQPAIEAAAAFAIEPTTGKVLLNQNGDEKLGIA 67

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILA 134
           S+TKM+T YI+ E +++  L  + Q+ +S+ A         S + L+    ++ E+   A
Sbjct: 68  SMTKMITEYILLETIKNGDLAWDDQVNISEYAHNISQNYELSNVPLRIDDTYSVEELYQA 127

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------- 183
           +   SAN  + A  E I+G EK F  +M  K +  G+ N    N +GL            
Sbjct: 128 MAIYSANGATIALAEHIAGDEKSFVDMMHEKVESWGITNYELYNTTGLSNSDLQGNIYPG 187

Query: 184 ---DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM- 234
              D     TAR+ +I+   L  +FP+  K  SI + ++R        + N N +L  + 
Sbjct: 188 STEDSENSMTAREMSIVAQRLLVDFPEVLKTSSISEKKFREGTSDEISMQNFNWMLPGLI 247

Query: 235 ---HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE----RDQKALELITSF 287
               N+DG+KTG T  +G ++  +   +   ++ +VM     QE    R  +  +++   
Sbjct: 248 YERENVDGLKTGTTDFAGASMTGTAEEEGMRVITIVMNATNGQENLSKRFAETDKIMDWA 307

Query: 288 LEK----KTLKHQQTHR-KDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
            E        K  QT    + L+    K+  +   ++   S     +A +  T
Sbjct: 308 FENWDMVPVFKEGQTLEDVEPLAVDKGKEDTLNVAVQSDVSLLVPTNADSEKT 360


>gi|291524730|emb|CBK90317.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale DSM 17629]
          Length = 371

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 104/250 (41%), Gaps = 20/250 (8%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+ + D +       K   +    AS TK++T  +  E     K  +N  + +S+ AA
Sbjct: 70  AVSAALYDADDETFIYGKNMRDSMANASTTKILTCIVALE-----KADINDTVTISQNAA 124

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +Q   KL L     +  +  +  ++  S ND + A  E + GS + FA LM+ KA +IG 
Sbjct: 125 SQPEVKLGLVAGNSYNMKDLLYGMMLESFNDCAYAIAEHVGGSTEGFAKLMNEKANEIGC 184

Query: 172 QNTIYKNASGLHDKN----QITTARDQAILGILLRKNFP---QYYKYFSIRKFRYRNR-- 222
             T +   +GL  +N      +TA D  ++        P   Q+ +     ++ +  +  
Sbjct: 185 LGTYFITPNGLDAENDISFHHSTAGDLCVIMSYCAWKSPKSTQFLEITQTMQYTFETKEG 244

Query: 223 --IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM---PTSQERD 277
             + +NHN+LL +       KTG+T  +G+  V ++      +   ++G         + 
Sbjct: 245 QMVFSNHNRLLTETDYCISGKTGFTTKAGYCYVAAVEKDGRRMCLSLLGCGWPNNKNYKW 304

Query: 278 QKALELITSF 287
             A  L+   
Sbjct: 305 ADAKSLVEYA 314


>gi|226305499|ref|YP_002765459.1| D-alanyl-D-alanine carboxypeptidase [Rhodococcus erythropolis PR4]
 gi|226184616|dbj|BAH32720.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus
           erythropolis PR4]
          Length = 437

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 62/318 (19%), Positives = 117/318 (36%), Gaps = 25/318 (7%)

Query: 37  LSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
             +++   A  L A       ++ D    ++   K    RY PAS  KM+   +  + L 
Sbjct: 98  CGVVLPDGAPPLPADIAASGWVLADAETGEVLAAKDPHGRYRPASTIKMLLALVALDELD 157

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
                L+T+I  +   A    S + + +   +T  Q +  L+  S ND + A    + G 
Sbjct: 158 -----LDTEITATAEDADAEGSAVGIGKGGKYTNRQLMQGLVMASGNDAAHALARQLGGD 212

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN---------- 204
                  M+  A ++G  +T     SGL      ++  D A++     +N          
Sbjct: 213 AAA-VSKMNALAVELGALDTRTATPSGLDGPGMSSSPYDLAVIFHTALQNPTFAGLIHTE 271

Query: 205 ---FPQYYKYFSIRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
              FP + K  +I   + R    + N N+LL       G KTG+T ++    V +     
Sbjct: 272 TVEFPGFPKDPTIPDDQDRPGFTLANDNQLLYNYDGALGGKTGFTDDARHTYVGAAERNG 331

Query: 261 DPIVAVVMGMPTSQER-DQKALELITSF--LEKKTLKHQQTHRKDNLSSTSLKKSLMIKK 317
             ++  +MG      R  ++A  L+     L   T     T R  + ++  + ++     
Sbjct: 332 RKLLVTLMGGEAKPIRPWEQAARLLDYGYALPASTTVGSLTDRSTDDATPDVTRTPSAAA 391

Query: 318 LKRTYSQFKKIDAKAHST 335
                +     D ++ +T
Sbjct: 392 PGSISAAPTATDTESDTT 409


>gi|296168851|ref|ZP_06850523.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295896468|gb|EFG76118.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 413

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 107/263 (40%), Gaps = 16/263 (6%)

Query: 37  LSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
             I+    A  L       + +V D++   +   K    R+ PAS+ K+    +    + 
Sbjct: 83  CGIVAAPDAPPLPTDVSADAWLVADLDSGAVIAAKDPHGRHRPASIIKV---LVAMASIN 139

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
           +  L+LN  +P +   A    +K+ ++E   FT  Q +  L+  S ND + A    + G 
Sbjct: 140 A--LNLNKAVPGTAEDAAAEGTKVGVEEGGVFTVNQLLHGLLMHSGNDAAHALAMQLGGM 197

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           ++     ++  A K+G ++T     SGL      T+A D  +      +N P +    + 
Sbjct: 198 QQA-VEKINVLAAKLGGKDTRAATPSGLDGPGMSTSAYDIGLFYRYAWQN-PTFADIVAT 255

Query: 215 RKFRYRNRI------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           R F +          + N N+LL       G KTGYT ++G   V +  +    ++AV++
Sbjct: 256 RTFDFPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANHNGRRLMAVLL 315

Query: 269 -GMPTSQERDQKALELITSFLEK 290
            G        ++A  L+      
Sbjct: 316 HGTRQPIAPWEQAAHLLDYGFAT 338


>gi|196043568|ref|ZP_03110806.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           03BB108]
 gi|196025877|gb|EDX64546.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           03BB108]
          Length = 338

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 134/296 (45%), Gaps = 21/296 (7%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RY 76
           ++++   L+   +  ++I++          + AK   S+I+ID N  ++   K +E    
Sbjct: 3   FLKKITILLLSFVITALIVLYFYLYVNGPIIQAK---SAILIDANSGEVVYKKNEETSIQ 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            A+L+K+MT YI+ E L    + L+  + +S        S + +  K   T    + AL+
Sbjct: 60  SATLSKLMTEYIVLEQLDKGNIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHALL 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI-YKNASGLHDKNQI---TTAR 192
               N  + A  E I+G+E  F  LM+ KAK++ +     + NA+G+++       TTA 
Sbjct: 120 LTGNNRSTLALAEHIAGNEDNFTQLMNEKAKQLKLSQPFPFLNATGMNNGTNKLSTTTAI 179

Query: 193 DQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGY 244
           +   L   L  +FP       +    F +++  + N NK++       K+  +DG++T +
Sbjct: 180 EVGKLATRLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKLQGVDGLQTSF 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + N  ++ V++ +  D  +++V++          +  +L+    +  +    Q  +
Sbjct: 240 STNGNYSFVSTAQRGDTRLISVILDSNEENSTFIETKKLLQYGFDPSSYSALQAFK 295


>gi|295090867|emb|CBK76974.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cf.
           saccharolyticum K10]
          Length = 528

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 56/255 (21%), Positives = 105/255 (41%), Gaps = 27/255 (10%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---- 111
           IVID +   +   +       PAS+TK++T  ++ E        L+  +  S  A     
Sbjct: 45  IVIDADSGAVLFGQGIHNQSPPASITKLLTALVVVE-----NSSLDDMVTFSHDAVYNVE 99

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           + + +K  ++E    +    +  L+ +S+N  + A  E ++GS   F  +M+ K  ++G 
Sbjct: 100 SGSGNKKNIEEGDVLSVRDCLYLLLLQSSNQAANALAEHVAGSRDAFVEMMNEKVSELGC 159

Query: 172 -QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR-------YRNRI 223
             +T + N SGL+D  Q  +A D A++      N  Q Y+  S + ++            
Sbjct: 160 VDDTHFANPSGLNDDTQHVSAYDMALIAKAAFDN-QQVYEIASTKSYKLPATINNPNGVT 218

Query: 224 ITNHNKLL--------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
            TN ++L+                 KTGYT  +G  +VT        +++V++    S  
Sbjct: 219 CTNEHRLIITEDETSELYYPAAKAGKTGYTSLAGNTLVTCAEEDGRCLISVILKGQPSPN 278

Query: 276 RDQKALELITSFLEK 290
                  L+    E+
Sbjct: 279 YFLDGKNLLQFGFER 293


>gi|56808710|ref|ZP_00366431.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Streptococcus
           pyogenes M49 591]
          Length = 401

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 66/300 (22%), Positives = 139/300 (46%), Gaps = 31/300 (10%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEY 92
           +    +  I +A++     ++ +IV++ +  ++   K  + P   ASLTK++T Y++ + 
Sbjct: 3   LTCSGLSKIVLAADFQVGAEH-AIVVEADSGRVLYEKDAKTPDAIASLTKLVTAYLVLDK 61

Query: 93  LQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           ++S +L L+ Q+ +S  A      ++ S +   +K  ++ +  + A +  S+N  + A  
Sbjct: 62  VKSGQLQLSDQVNLSDYAFELTKDRSLSNVPF-DKKTYSVQDLLTATLVASSNSAAIALA 120

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK--------------NQITTARDQ 194
           E ++GSE  F   M  +    G+ +    NASGL ++                + +A+D 
Sbjct: 121 EKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKDHRYPGSALEEENMLSAQDV 180

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIKTGYTRNSGF 250
           AI+ + L ++FP+  +     +  +    I + N+LL  M      +DG+KTG T  +G 
Sbjct: 181 AIVTMHLLEDFPEILEITKQTEVDFAGNSIKSFNQLLPGMAKGRAGVDGLKTGTTDLAGH 240

Query: 251 NIVTSLRYKDDPIVAVVMGMPTS----QERDQKALELITSFLEKKTLKHQQTHRKDNLSS 306
            +V +       ++ V++    S      R ++A  L+      +T   ++  +K +L S
Sbjct: 241 CLVVTSIENGMRLITVILNADGSDKNQNTRFEQANRLLDYVA--RTYCRRKILKKGSLVS 298


>gi|77409053|ref|ZP_00785771.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
           agalactiae COH1]
 gi|77172347|gb|EAO75498.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
           agalactiae COH1]
          Length = 395

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 72/317 (22%), Positives = 136/317 (42%), Gaps = 33/317 (10%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A   +A  K+ ++ +D++  ++   K  ++P   ASLTK+MT+Y++++ + +  L  NT+
Sbjct: 6   AESFNASAKH-ALAVDLDSGKILYEKDANKPAAIASLTKIMTVYMVYKEIDNGNLKWNTK 64

Query: 104 IPVSKTAA----TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           + +S          + S + L+++  +T +Q + A +  SAN  + A  E ISG+E KF 
Sbjct: 65  VNISDYPYQLTRESDASNVPLEKR-RYTVKQLVDAAMISSANSAAIALAEHISGTESKFV 123

Query: 160 ILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNF 205
             M+ + +K G+ ++   NASGL+              +     +ARD AI    L   +
Sbjct: 124 DKMTAQLEKWGIHDSHLVNASGLNNSMLGNHIYPKSSQNDENKMSARDIAIAAYHLVNEY 183

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           P   K  S    ++   I+ ++N +L  M      I G+KTG T  +G + + +      
Sbjct: 184 PSILKITSKSVAKFDKDIMHSYNYMLPDMPVFRPGITGLKTGTTELAGQSFIATSTESGM 243

Query: 262 PIVAVVMGM----PTSQERDQKALELITSFLEKK----TLKHQQTHRKDNLSSTSLKKSL 313
            ++ V+M           R      L+            L     ++    S    K+  
Sbjct: 244 RLLTVIMHADKADKDKYARFTATNSLLNYITNTYEPNLVLAKGAAYKGKEASVRDGKEQS 303

Query: 314 MIKKLKRTYSQFKKIDA 330
           +I   K      +K + 
Sbjct: 304 VIAVAKNDLKVVQKKNI 320


>gi|229161459|ref|ZP_04289440.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
 gi|228621996|gb|EEK78841.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
          Length = 338

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 140/296 (47%), Gaps = 21/296 (7%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-Y 76
           ++++   L+   L  ++I++          + AK   S+I+ID +  ++   K +E    
Sbjct: 3   FLKKITVLLLSFLITALIVLYFYLYVNGPVIQAK---SAILIDASSGEVIYKKNEETLIQ 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            A+L+K+MT YI+ E L   K+ L+  + +S        S + +  K   T    + AL+
Sbjct: 60  SATLSKLMTEYIVLEQLNDGKIQLDESVKISNEVFQAETSPIQVTSKDKTTVRDLLHALL 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM-QNTIYKNASGLHDKNQI---TTAR 192
               N  + A  E ISG+E  F  LM+ KAK++ + Q++ + N++G+++       TTA 
Sbjct: 120 LTGNNRSALALAEHISGNEDSFTTLMNEKAKQLQLSQSSPFLNSTGVNNDTNKQPSTTAL 179

Query: 193 DQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGY 244
           D A L   L K+FP       +    F +++  + N NK++       K+  +DG++T +
Sbjct: 180 DVAKLATQLVKDFPDVLNITKLTSYQFSFKDFQVFNTNKMIYSLNKDIKLQGVDGLQTSF 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + N  ++ V++ +  +  +++V++          +  +L+    +  +    Q  +
Sbjct: 240 STNGIYSFVSTAKLGNTRLISVILEADEENSTFIETKKLLQYGFDPSSYSALQAFK 295


>gi|225864539|ref|YP_002749917.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           03BB102]
 gi|229184786|ref|ZP_04311979.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
 gi|225790611|gb|ACO30828.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 03BB102]
 gi|228598690|gb|EEK56317.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
          Length = 338

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 131/290 (45%), Gaps = 26/290 (8%)

Query: 34  ILFLSIIMISM----------ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTK 82
           IL LS ++ ++             + AK   S+I+ID N  ++   K  D     A+L+K
Sbjct: 9   ILLLSFVITALIVLYFYLYVNGPIIQAK---SAILIDANSGEVVFKKNEDISIQSATLSK 65

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT YI  E L   K+ L+  + +S        S + +  K   T    + AL     N 
Sbjct: 66  LMTEYIAMEQLHEGKIQLDELVKISNEVFRAETSPIQVTSKDKTTVRDLLHALFLTGNNR 125

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDKNQI---TTARDQAILG 198
            + A  E I+G+E  F ILM+ KAK++ +   + + NA+G+++       TTA D   L 
Sbjct: 126 SALALAEHIAGNEDNFTILMNEKAKQLKLSQPSPFLNATGMNNDTNKQSNTTAIDVGKLA 185

Query: 199 ILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLNKMH------NIDGIKTGYTRNSGF 250
             L K+FP       +    F +++  + N NK++  ++       +DG++T ++ N  +
Sbjct: 186 TQLVKDFPNVLNITKLTSYQFTFKDSKVFNTNKMIYSLNKNINLQGVDGLQTSFSTNGNY 245

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + V++ +  D  +++V++          +  +L+    +  +    Q  +
Sbjct: 246 SFVSTAQRGDTRLISVILDSNEENSTFIETKKLLQYGFDPSSYSALQAFK 295


>gi|187932735|ref|YP_001884791.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum B str.
           Eklund 17B]
 gi|187720888|gb|ACD22109.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum B
           str. Eklund 17B]
          Length = 443

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 70/285 (24%), Positives = 123/285 (43%), Gaps = 26/285 (9%)

Query: 24  IQRNIQLMGKILFLSII------MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRY 76
           ++ +++ +   LF+ ++       +S   E++A+    S+++D +  ++   K  D+   
Sbjct: 5   MKSHLKTLIFFLFIFLVSSINVMAVSSPPEINAE---GSVLMDASTGEILFSKNPDKVLE 61

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS TK+MT  +  E        LN ++ V++     + + + L +    T +  +L L+
Sbjct: 62  PASTTKVMTAILTLENCD-----LNEEVVVTEDFTKIDGTTIGLLKGDIVTVKDLLLGLL 116

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A    +S S  KFA+LM+ KA +IG  NT +KN SGL D   +TTA D A+
Sbjct: 117 LESGNDAANALACHVSSSIDKFAVLMNKKATEIGAVNTHFKNPSGLPDPEHLTTAHDLAL 176

Query: 197 LGILLRKN--FPQYYKYFS----IRKFRYRNRIITNHNKLLNK-----MHNIDGIKTGYT 245
           +     KN  F +  K  +    I+    R   I N N ++NK            K GYT
Sbjct: 177 IMNEAIKNDKFLELSKVMTYEIPIKNDSSRTIWINNKNHMINKNSMYYYQYTLTGKNGYT 236

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
             S      +       +VA  +      +  +    +       
Sbjct: 237 TKSNHTYTVAAENNGHILVASYLNALDKDKNFEDMRTVFNYGFNN 281


>gi|322411118|gb|EFY02026.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 412

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 149/343 (43%), Gaps = 34/343 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R   ++  ++ L+     + S+  +     +I ++V+  ++   K+ +   P AS+TK
Sbjct: 2   IKRLFFVL--LITLAFRATPINSDDFSVAAKHAIAVEVDSGKILYEKEADKAVPVASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ + + KL   + + +S          + S + L  +  +T ++ + ALI  
Sbjct: 60  LLTTYLVYKEIANGKLEWGSSVTISNYPYELTTNYSISNVPLDAR-KYTVKELLKALIVT 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           +AN  + A  E + G+E KF   MS + K+ G+ +    NA+GL               +
Sbjct: 119 NANSPAIALAEKMGGTEPKFVDKMSQQLKEWGISDAKLVNATGLTNHFLGKNKYPKTEDE 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
              + +ARD AI+   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENLFSARDLAIIARHLLTEFPEVLKITSKPSANFAGQTIYSYNYMLKDMPYYRDGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER--------DQKALELITSFLEKKT 292
             GY+   G + V +       I+ VV+    +QE         +Q    L+T+F + + 
Sbjct: 239 FVGYSEKGGASFVATSVENRMRIITVVLNADQAQEDEFAVFSATNQLLQYLLTNFQKVQV 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           L   ++ +             +    ++  S  K  ++K   +
Sbjct: 299 LNKSKSGQIKAFPILDSPNKTVPLVAEKNLSLIKPANSKIKKS 341


>gi|313891603|ref|ZP_07825210.1| serine-type D-Ala-D-Ala carboxypeptidase [Dialister microaerophilus
           UPII 345-E]
 gi|313119881|gb|EFR43066.1| serine-type D-Ala-D-Ala carboxypeptidase [Dialister microaerophilus
           UPII 345-E]
          Length = 323

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 76/261 (29%), Positives = 119/261 (45%), Gaps = 16/261 (6%)

Query: 48  LHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
           L      S  + D N  +  G K  E R YPAS TK++T  I  E        LN    +
Sbjct: 53  LPQVDAVSVAIADGNTGKFLGGKDSELRVYPASTTKILTCIIALEEGHD---KLNDNALI 109

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
           +  A  Q+ + L LK     + ++ +  ++  S ND + +  E +SG+ + F  LM+ KA
Sbjct: 110 TPNATKQDGTCLGLKPDLPISLQELLYGMMLVSGNDAAVSVAETVSGNYETFIKLMNAKA 169

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR--KFRYRN--- 221
           K IG  N+ + NA+GL DKN  TTA D A + +   KN   + K          YR+   
Sbjct: 170 KNIGAVNSNFVNANGLTDKNHYTTASDMAKIAVYAMKNQN-FRKIVKEPFHMMTYRDGTI 228

Query: 222 RIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           R I N N+ L       +GIKTG T  +G  +V S          VV+ +   + R +  
Sbjct: 229 RRIENRNEFLESGYEGANGIKTGMTEAAGDCLVASAERDGH---LVVVSIYNDENRWEDV 285

Query: 281 LELITSFLEKKTLKHQQTHRK 301
            +L+    +   +K+++ + K
Sbjct: 286 KKLLDYGFD--AIKNEEMYEK 304


>gi|254776738|ref|ZP_05218254.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 367

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 62/266 (23%), Positives = 108/266 (40%), Gaps = 19/266 (7%)

Query: 37  LSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFE 91
           L    I  A      P      + +V D++   +   K    R+ PAS+ K+    +   
Sbjct: 34  LGSCGIVAAPNTPPLPGDVSAEAWLVADLDSGAVIAAKDPHGRHRPASIIKV---LVAMA 90

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            + +  L+LN  +P +   A    +K+ ++E   FT  Q +  L+  S ND + A    +
Sbjct: 91  AINT--LNLNKAVPGTADDAAAEGTKVGVEEGGVFTVNQLLHGLLMHSGNDAAHALAMQL 148

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            G ++     ++  A K+G Q+T     SGL      T+A D  +      +N P +   
Sbjct: 149 GGMQQA-LEKINVLAAKLGGQDTRVATPSGLDAPGMSTSAYDIGLFYRYAWQN-PTFADI 206

Query: 212 FSIRKFRYRNRI------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            + R F +          + N N+LL K     G KTGYT ++G   V +  +    +VA
Sbjct: 207 VATRTFDFPGHGDHPGYELENDNQLLYKYPGALGGKTGYTDDAGQTFVGAANHDGRRLVA 266

Query: 266 VVM-GMPTSQERDQKALELITSFLEK 290
           V++ G        ++A  L+      
Sbjct: 267 VLLHGTRQPIAPWEQAAHLLDYGFAT 292


>gi|291528948|emb|CBK94534.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale M104/1]
          Length = 371

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 104/250 (41%), Gaps = 20/250 (8%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+ + D +       K   +    AS TK++T  +  E     K  +N  + +S+ AA
Sbjct: 70  AVSAALYDADDETFIYGKNMRDSMANASTTKILTCIVALE-----KADINDTVTISQNAA 124

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +Q   KL L     +  +  +  ++  S ND + A  E + GS + FA LM+ KA +IG 
Sbjct: 125 SQPEVKLGLVAGNSYNMKDLLYGMMLESFNDCAYAIAEHVGGSTEGFAKLMNEKANEIGC 184

Query: 172 QNTIYKNASGLHDKN----QITTARDQAILGILLRKNFP---QYYKYFSIRKFRYRNR-- 222
             T +   +GL  +N      +TA D  ++        P   Q+ +     ++ +  +  
Sbjct: 185 LGTYFITPNGLDAENDISFHHSTAGDLCVIMSYCAWKSPKSTQFLEITQTMQYTFETKEG 244

Query: 223 --IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM---PTSQERD 277
             + +NHN+LL +       KTG+T  +G+  V ++      +   ++G         + 
Sbjct: 245 QMVFSNHNRLLKETDYCISGKTGFTTKAGYCYVAAVEKDGRRMCLSLLGCGWPNNKNYKW 304

Query: 278 QKALELITSF 287
             A  L+   
Sbjct: 305 ADAKSLVEYA 314


>gi|228921242|ref|ZP_04084570.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838412|gb|EEM83725.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 338

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 140/296 (47%), Gaps = 21/296 (7%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
           ++++   L+      ++I++          + AK   S+I+I+ N  ++   K +E P  
Sbjct: 3   FLKKFAILLLSFFITALIVLYFYLYVNGPIIQAK---SAILINANSGEIVYKKNEETPVQ 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            A+L+K+MT YI+ E L  +K+ L+  + +S        S + +      T    + AL+
Sbjct: 60  SAALSKLMTEYIVLEQLNDRKIQLDDFVQISNEVFRVETSPIQVTSNDKTTVRDLLHALL 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG-MQNTIYKNASGLHDKNQI---TTAR 192
               N  + A  E I+G+E  F ILM+ KAK++  +Q + + N++G+++       TTA 
Sbjct: 120 LAGNNRSALALAEHIAGNEDNFTILMNKKAKELKLLQPSPFLNSTGINNDTNKQSTTTAI 179

Query: 193 DQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGY 244
           D A L   L K+FP       +    F +++  + N NK++       K+  +DG++T +
Sbjct: 180 DAAKLAARLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSF 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + N  ++ V++ +  D  +++V++          +  +L+    +  +    Q  +
Sbjct: 240 STNGNYSFVSTAKLGDTRLISVILDADEENISFIETKKLLQYGFDPSSCSALQAFK 295


>gi|306828006|ref|ZP_07461272.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pyogenes
           ATCC 10782]
 gi|304429787|gb|EFM32830.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pyogenes
           ATCC 10782]
          Length = 410

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 132/307 (42%), Gaps = 26/307 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R I L+   LF +   +S   E ++      I +D+   ++   K  +   P AS++K
Sbjct: 2   IKRLISLVVIALFFAASTVS--GEEYSVTAKHVIAVDLESGKVLYEKDAKEVVPVASVSK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ +   KL+ ++ + +S            S + L +K  +T ++ + AL+  
Sbjct: 60  LLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPL-DKRKYTVKELLSALVVN 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           +AN  + A  E I G+E KF   M  + ++ G+ +    N++GL               D
Sbjct: 119 NANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
                 A D AI+   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIFDGQTIYSYNYMLKGMPCYREGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
             GY++ +G + V +       ++ VV+    S E D    +     L+   +  Q+   
Sbjct: 239 FVGYSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQL 298

Query: 301 KDNLSST 307
            +N    
Sbjct: 299 IENNKPV 305


>gi|260437596|ref|ZP_05791412.1| serine-type D-Ala-D-Ala carboxypeptidase [Butyrivibrio crossotus
           DSM 2876]
 gi|292809949|gb|EFF69154.1| serine-type D-Ala-D-Ala carboxypeptidase [Butyrivibrio crossotus
           DSM 2876]
          Length = 443

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 72/282 (25%), Positives = 122/282 (43%), Gaps = 28/282 (9%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-- 113
           +++D +  ++   +  D+  YPAS TKMMT  +  E        ++  +  SK A     
Sbjct: 42  VLMDADSGEVLYQRNMDKKCYPASTTKMMTALLTIE-----NTSMSDVVTYSKAAVDSVS 96

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              + + +      T EQ +  L+ RSANDV+    E++ G+   FA +M++KA  +G  
Sbjct: 97  PGDANVGIAVGEQLTVEQSLYCLMLRSANDVAYGLAEYVGGTASGFASMMNDKAAALGAV 156

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRK-----NFPQYYKYFSIRKFRYRNRIITNH 227
           +T + N SGL ++   +T  D A++G          N   Y   + I K    N I    
Sbjct: 157 STHFSNPSGLTNEFHYSTPYDMALIGRACFNNKTLVNIMSYTGVYKIGKTNTNNNIRYYT 216

Query: 228 NK--LLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           ++  +L           G KTGYT  +G  +V+        +V  VM   T+  R   ++
Sbjct: 217 HRFQMLKGGEYEYRYSKGGKTGYTDAAGNCLVSFAEKDGIRLVCSVMNS-TASGRYTDSI 275

Query: 282 ELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYS 323
            L   +L      +++ +  DN  S+S   S  +  L  TY 
Sbjct: 276 ALFDYYLNN----YRKCYLDDNNMSSS---SFGLDALDITYK 310


>gi|257066773|ref|YP_003153029.1| Serine-type D-Ala-D-Ala carboxypeptidase [Anaerococcus prevotii DSM
           20548]
 gi|256798653|gb|ACV29308.1| Serine-type D-Ala-D-Ala carboxypeptidase [Anaerococcus prevotii DSM
           20548]
          Length = 403

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 133/297 (44%), Gaps = 17/297 (5%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           + ++ +     +   K  DE    ASLTK+MT  ++ + + + K+ LNT +   K A   
Sbjct: 40  AYLIGNQENGDIYYEKNADEALPMASLTKLMTFLLVRDAMDAGKIDLNTSVKADKRAEEL 99

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   S L LKE   ++ E+ +  LI  S ND +    + ++GSE KFA +M+ KAK +G
Sbjct: 100 TSWEYSALGLKENESYSVEELLQGLIAVSGNDCAHLLAKTVAGSEDKFAQMMNQKAKDLG 159

Query: 171 MQNTIYKNASGL---HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII--T 225
           + +  Y NASG+     K   ++ARD   L   + K +P   +Y ++ +     + I   
Sbjct: 160 LTSQKYYNASGIGTDDGKENKSSARDLFKLSSEIVKKYPDILRYSTMDEVNIPGKGIRKN 219

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY------KDDPIVAVVMGMPTSQERDQK 279
           +   L  ++  +DG+KTG T  +G+ +VT+          +   + VVMG      RD  
Sbjct: 220 STIPLRGEIKGVDGLKTGTTDQAGYCLVTTTDMKELDGNDEFRTIGVVMGADQKDTRDSV 279

Query: 280 ALELITSFLEKKTLKH--QQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
             +LI       + +         D +   S K+  +    K   S   K D K  +
Sbjct: 280 MSDLIYYVSRYYSCEKVLDTNKSLDTIDEISAKQGYIELYPKENLSIISKDDKKVAT 336


>gi|295693488|ref|YP_003602098.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus ST1]
 gi|295031594|emb|CBL51073.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus ST1]
          Length = 433

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 66/270 (24%), Positives = 123/270 (45%), Gaps = 33/270 (12%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKT 109
           S+I ID +  Q+   K   +    AS+TK++T+Y+  + +++ KL  + ++    P+ K 
Sbjct: 51  SAIAIDSDSGQILYAKNAAQTLPIASMTKLVTVYLTLQAIKNHKLSWDQKVKPTAPIVKV 110

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A     S + LK    +T  Q   A +  SAN  +   G+ I+GS+K F   M ++ KK 
Sbjct: 111 ANNAEYSNVPLKLGHSYTIRQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRDQVKKW 170

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++     A GL + N                 +A+D AI+G  L   FP+  +   + 
Sbjct: 171 GIEDAKIYTACGLPNGNLGKDAYPGVNKNAENTMSAKDMAIVGQKLISAFPEVLETTRLA 230

Query: 216 KFRYRN----RIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              +++      + N N +L  +      + +DG+KTG T  +G   + ++++    ++ 
Sbjct: 231 HLNFKDAGHVTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVQHNGARLLT 290

Query: 266 VVMGMP----TSQERDQKALELITSFLEKK 291
           VVMG      T   R ++  +L+     K 
Sbjct: 291 VVMGARHRDGTDPARFEQTKKLMNYVFTKY 320


>gi|295110604|emb|CBL24557.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162]
          Length = 439

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 64/263 (24%), Positives = 105/263 (39%), Gaps = 21/263 (7%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           I+      A    +++++D +   +   K  DE RYPAS TK+MTL +  E    K    
Sbjct: 43  IANWPAAPAVTSETAVLMDADTGAILYDKGMDEYRYPASTTKLMTLLVAIENSSPK---- 98

Query: 101 NTQIPVSKT---AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
              +  ++T     T + S +  +     T +    A   +SAN+V     E++ G+E  
Sbjct: 99  -DVVTFTETGVRDVTWDSSNINAQLGETMTMKDCWFAAYIKSANEVCAQIAEYVGGTEAN 157

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F  +M+ KAKK+G  +T + NASGL D+N  + A D A +     KN  ++ K      +
Sbjct: 158 FVEMMNQKAKKLGCTHTHFVNASGLPDENHYSCAEDLAKIMRAGLKN-ARFRKVLETVSY 216

Query: 218 RYR------NRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
                     R +  H  LL K          G KTG++  +   +  +        +AV
Sbjct: 217 TIPATNLSAARSLHTHVPLLAKESSLYYEGCIGGKTGFSTEAQNCLAVAAERNGRTYIAV 276

Query: 267 VMGMPTSQERDQKALELITSFLE 289
            M           +  L      
Sbjct: 277 TMRDTDLGINCADSTALFDYAFN 299


>gi|317132474|ref|YP_004091788.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ethanoligenens
           harbinense YUAN-3]
 gi|315470453|gb|ADU27057.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ethanoligenens
           harbinense YUAN-3]
          Length = 371

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 65/264 (24%), Positives = 108/264 (40%), Gaps = 21/264 (7%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
            +  S   A    + +V D +  Q+   K      YPAS+TK++T  +  E         
Sbjct: 39  AADTSGAPALACATGLVADADTGQIYYQKDMHNRMYPASITKILTALVSVENGDP----- 93

Query: 101 NTQIPVSKTAATQNPS---KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           +  I V +       S    + L      T EQ    +   SAND + A  + I GS   
Sbjct: 94  SDVITVPQDVTQAQGSSVANIALVPGDTITMEQLEYTMFLASANDSAIAIADHIGGSVSG 153

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F  +M+ KA  +G +++ +   +GL D N  T+A D A++     +N P   +YFS R F
Sbjct: 154 FVDMMNQKATALGAKDSHFSTPNGLPDPNNYTSAYDMALITRAAAQN-PTLMRYFSARSF 212

Query: 218 R-------YRNRIITNHNKLLNK--MHNID--GIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
                      +  T  +K++ K   ++ D    KTG+   SG  +VT  +     ++AV
Sbjct: 213 TLPVSALRKGAQSFTTLHKMMKKTAYYDADVEAGKTGWETMSGNTLVTVAQKNGRTLIAV 272

Query: 267 VMGMPTSQERDQKALELITSFLEK 290
           V+    S+        L+     +
Sbjct: 273 VLDGANSEAIYGDTRHLLDYAFAQ 296


>gi|229030238|ref|ZP_04186295.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
 gi|228731082|gb|EEL82007.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
          Length = 338

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 130/290 (44%), Gaps = 26/290 (8%)

Query: 34  ILFLSIIMISM----------ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
           IL LS ++ ++             + AK   S+I+ID N  ++   K +E P   A+L+K
Sbjct: 9   ILLLSFVITALIVLYFYLYVNGPIIQAK---SAILIDANSGEVVYKKNEEIPIQSATLSK 65

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT YI  E L   K+ L+  + +S        S + +  K   T    + AL     N 
Sbjct: 66  LMTEYIAMEQLNEGKIQLDELVKISNEVFRAEKSPIQVTSKDQTTVRDLLHALFLTGNNR 125

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDKNQI---TTARDQAILG 198
            + A  E I+G+E  F +LM+  A ++ +   + + NA+G+++       TTA D A L 
Sbjct: 126 SALALAEHIAGNEGNFTLLMNENATQLKLSQPSPFLNATGMNNDTNKQSTTTAIDVAKLA 185

Query: 199 ILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGYTRNSGF 250
             L  +FP       +    F +++  + N NK++       K+  +DG++T ++ N  +
Sbjct: 186 TQLVTDFPDVLNITKLTSYQFTFKDSKVFNTNKMIYSLNKNIKLQGVDGLQTSFSTNGNY 245

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + V++    D  +++V++          +  +L+    +  +    Q  +
Sbjct: 246 SFVSTAHRGDTRLISVILDSSEENSTFIETKKLLQYGFDPSSYSALQAFK 295


>gi|254820249|ref|ZP_05225250.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium intracellulare
           ATCC 13950]
          Length = 407

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 61/266 (22%), Positives = 108/266 (40%), Gaps = 19/266 (7%)

Query: 37  LSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFE 91
           L+   I  A      P      + +V D++   +   K    R+ PAS+ K+    +   
Sbjct: 74  LASCGIVAAPNTPPLPGDVSAEAWLVADLDSGAVIAAKDPHGRHRPASIIKV---LVAMA 130

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            + +  L+LN  +  +   A    +K+ ++E   FT  Q +  L+  S ND + A    +
Sbjct: 131 AINT--LNLNKSVAGTADDAAAEGTKVGVQEGGVFTVNQLLHGLLMHSGNDAAHALAMQL 188

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            G ++     ++  A K+G Q+T     SGL      T+A D  +      +N P +   
Sbjct: 189 GGMQQA-LEKINVLAAKLGGQDTRVATPSGLDAPGMSTSAYDIGLFYRYAWQN-PTFANI 246

Query: 212 FSIRKFRYRNRI------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            + R F +          + N N+LL K     G KTGYT ++G   V +  +    +VA
Sbjct: 247 VATRTFDFPGHGDHPGYELENDNQLLYKYPGALGGKTGYTDDAGQTFVGAANHDGRRLVA 306

Query: 266 VVM-GMPTSQERDQKALELITSFLEK 290
           V++ G        ++A  L+      
Sbjct: 307 VLLHGTRQPIAPWEQAAHLLDYGFAT 332


>gi|251777766|ref|ZP_04820686.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243082081|gb|EES47971.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 438

 Score =  199 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 72/284 (25%), Positives = 122/284 (42%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISM--ASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYP 77
           ++ + +++  I FLSI ++S        A P+ ++   +++D +  ++   K  D+   P
Sbjct: 1   MKSHFKIL--IFFLSIFLVSSINVMAASAPPEINAEGSVLMDASTGEILFSKNPDKVLEP 58

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           AS TK+MT  +  E        LN ++ V++     + + + L +    T +  +L L+ 
Sbjct: 59  ASTTKVMTAILTLENCD-----LNEEVVVTEDFTKVDGTTIGLLKGDIVTVKDLLLGLLL 113

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND + A    IS S  KFA+LM+ K  +IG  NT +KN SGL D   +TTA D A++
Sbjct: 114 ESGNDAANALACHISSSIDKFAVLMNKKTIEIGAVNTHFKNPSGLPDPEHLTTAHDLALI 173

Query: 198 GILLRKN--FPQYYKYFS----IRKFRYRNRIITNHNKLLNK-----MHNIDGIKTGYTR 246
                KN  F +  K  +    I+    R   I N N ++NK            K GYT 
Sbjct: 174 MNEAIKNDKFLELSKVMTYEIPIKNDSSRTIWINNKNHMINKNSMYYYPYTLAGKNGYTT 233

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            S      +       +VA  +      +  +    +       
Sbjct: 234 KSNHTYAIAAENNGHILVASYLNALDKNKNFEDMKTVFNYGFNN 277


>gi|312199939|ref|YP_004020000.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Frankia sp.
           EuI1c]
 gi|311231275|gb|ADP84130.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Frankia sp.
           EuI1c]
          Length = 437

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 57/267 (21%), Positives = 103/267 (38%), Gaps = 18/267 (6%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYL 93
           L +     S+  +L +      +V D +  Q+   K  + R  PAS  K++T  ++   L
Sbjct: 63  LAVGAGATSLPGQLTSA---GWLVADADTGQILAAKGADTRDLPASTMKILTALVVLPGL 119

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
              +     ++ V + A T + +K+ L     +       A++  S ND + A  + + G
Sbjct: 120 APDR-----RVTVGRDAVTVDGTKVGLVPGQSYLVRDLATAMLIASGNDATVALVDAVGG 174

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
                   M+  A  +G  +T   + +GL    Q+++ RD AILG       P   +Y +
Sbjct: 175 -RDAVVARMNALAASLGATDTHAVDPTGLDAPGQLSSVRDLAILGRAAIAQ-PVISRYLT 232

Query: 214 IR-----KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           I           +  I NHN LL +     G+K GYT  +    V + R     +V  ++
Sbjct: 233 IPRAVLPTPNGGSFEIQNHNLLLGRYPGTLGVKNGYTVAADATYVGAARRGGRTLVVALL 292

Query: 269 GMPTSQERDQKALELITSFLEKKTLKH 295
               +      A  L+        +  
Sbjct: 293 RAAPNYA--ADARALLDWGFANDGVAA 317


>gi|229091549|ref|ZP_04222757.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
 gi|228691773|gb|EEL45522.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
          Length = 338

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 136/296 (45%), Gaps = 21/296 (7%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
           ++++   L+   +  ++I++          + AK   S+I+ID N  ++   K +E P  
Sbjct: 3   FLKKITILLLSFVITALIVLYFYLYVNGPIVQAK---SAILIDANSGEVVYKKNEETPIQ 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            A+L+K+MT YI  E L    + L+  + +S        S + +  K   T    +  L+
Sbjct: 60  SATLSKLMTEYITLEQLNEGTIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHTLL 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM-QNTIYKNASGLHDKNQI---TTAR 192
               N  + A  E I+G+E KF  LM+ KAK + + Q++ + NA+G+++       TTA 
Sbjct: 120 LTGNNRSALALAEHIAGNEDKFTQLMNEKAKHLKLSQSSPFLNATGMNNDTNKLSTTTAI 179

Query: 193 DQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGY 244
           + A L   L  +FP       +    F +++  + N NK++       K   +DG++T +
Sbjct: 180 EVAKLATQLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKHQGVDGLQTSF 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + N  ++ V++ +  D  +++V++          +  +L+    +  +    Q  +
Sbjct: 240 STNGNYSFVSTAKQGDTRLISVILDAENENSTFIETKKLLQYGFDPSSYSALQAFK 295


>gi|309808134|ref|ZP_07702046.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners
           LactinV 01V1-a]
 gi|308168603|gb|EFO70709.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners
           LactinV 01V1-a]
          Length = 425

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 73/338 (21%), Positives = 136/338 (40%), Gaps = 41/338 (12%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKL 98
           I  + A +  A    ++I+ D+   Q+   K  + + P AS++K++T+Y+  + +++ KL
Sbjct: 49  ICDNYAQDNLALNAKAAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAIKAGKL 108

Query: 99  HLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
              T++  S+ A         S + LK    +T  Q   A + +SAN  +      ++GS
Sbjct: 109 SWQTKVMPSREAIAVSKNPEYSNVPLKLGHQYTIRQLYQATLIQSANGAAMVLASAVAGS 168

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAILGIL 200
            KKF  +M  +     +        SGL               D     +A D  IL   
Sbjct: 169 SKKFVGMMRKQLLDWHISQAQIVTPSGLPNFTLGRDADSTKNADAENELSASDMGILIKH 228

Query: 201 LRKNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKM------HNIDGIKTGYTRNSGF 250
           L   FPQ      I K  +        + N N +L  +      + +DG+KTG T  +G 
Sbjct: 229 LLLEFPQVLDTTRISKLNFPDGRNTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGA 288

Query: 251 NIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTL-KHQQTHRKDNLS 305
            + ++L      IV V++G      +   R  +  +L   F    +L  +++  +    +
Sbjct: 289 CLASTLVKNGRRIVTVIIGARHLNGSDPARFVETKKLYAYFYNNYSLHIYKRWTQFPGKT 348

Query: 306 STSLKKSLMIKKLKRTY-------SQFKKIDAKAHSTQ 336
              +K S + +     Y       S+ +K+DA+    +
Sbjct: 349 LIKVKSSPINEVRACLYQDTGIWISKDQKLDAELSMNK 386


>gi|313890311|ref|ZP_07823943.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121297|gb|EFR44404.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 404

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 151/342 (44%), Gaps = 36/342 (10%)

Query: 24  IQRNIQLMGKILFLSIIMIS---MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           +++ I LM  I  L++  +S    A +        +I ++ +  ++   K  D     AS
Sbjct: 1   MKKQIYLM-LICILTLFPLSHPVFADQALNLRAKEAIAVEYSTGKILYQKNSDRKVPIAS 59

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILAL 135
           LTK+MT+Y+  + + S +L  +  + +SK A       + S   L + +Y + ++ + + 
Sbjct: 60  LTKIMTIYLTLKEINSGRLKWDDSVEMSKYATDLANNPDISNPPLYKNSY-SVKELVDSS 118

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD----------- 184
           +  S+N  + A  E ISGSE KF   M ++ K  G+ +    NASGL++           
Sbjct: 119 MVVSSNSSAIALAEKISGSEAKFVDKMKDQLKTWGITDYQLVNASGLNNSMLNGHIYPGS 178

Query: 185 ---KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNI 237
                   +A+  AI+   L K+FP+     S  +  + N I+TN N LL       + +
Sbjct: 179 SKTSENRLSAKSLAIVSRHLIKDFPEILTISSQNQIYWGNDILTNSNHLLPGNTMARNGV 238

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM----PTSQERDQKALELITSFLEKK-- 291
           DG+KTG T  +G   + +       ++ V++        S  R  +A +L     +    
Sbjct: 239 DGLKTGTTTKAGQTYIGTAVQDKMRVIVVILNATDAPKDSNARFVEANKLFDYSFQNYQK 298

Query: 292 -TLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
            T+   +      LS ++ K+ ++  K  R ++  + I+ + 
Sbjct: 299 ITIPKGKPFST-KLSISNAKQKMITFKSNRDFTVIQPINVQT 339


>gi|291459956|ref|ZP_06599346.1| serine-type D-Ala-D-Ala carboxypeptidase [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291417297|gb|EFE91016.1| serine-type D-Ala-D-Ala carboxypeptidase [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 509

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 63/272 (23%), Positives = 117/272 (43%), Gaps = 23/272 (8%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYL 93
            FL      ++         S+ ++D +   +   K  E R YPAS+TK+MT  ++ ++ 
Sbjct: 25  CFLLSSYAELSWPSADLTAVSAALMDADTGAVLFEKNGEQRMYPASITKVMTALVVLKHA 84

Query: 94  QSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
                +L  Q+  S  A        S   + E    T    + AL+ +SAN+ + A  E 
Sbjct: 85  -----NLEDQVSFSHDAVYNVDYGSSNAQIDEGDVLTVSDCLHALLLKSANEAANALAEH 139

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           ++GS +KFA +M+ +A  +G   T + N SGL  ++  TTA D A++G    ++  ++  
Sbjct: 140 VAGSREKFAEMMNEEAAALGCSGTHFSNPSGLFSEDHYTTAHDMALIGQAAFRD-KRFLD 198

Query: 211 YFSIRKFRYR-------NRIITNHNKLL-----NKMHNIDGIKTGYTRNSGFNIVTSLRY 258
               + +  +          I   +K+L          +   KTG+T+++G  ++T  + 
Sbjct: 199 IEKEKSYTLKGCRRNPEGITIYMEHKMLLQNSPYYDERVVAGKTGFTKDAGNTLLTLAQS 258

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
               ++AVV+G  T          L      +
Sbjct: 259 GKRRLIAVVLGDKTP-YHYSDTRALFDLGFGQ 289


>gi|304439141|ref|ZP_07399059.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304372273|gb|EFM25861.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 437

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 106/246 (43%), Gaps = 14/246 (5%)

Query: 60  DVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           D    ++  F   DE    AS +K++++Y++ + +++ KL L+  + +   A     S  
Sbjct: 82  DYATGEILEFNDIDEVVAMASTSKLVSVYVVLDQIKAGKLKLDDMVTIPHEAEVLPGSSY 141

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            +KE    T ++ + A +  S ND  T+    ++GS + F  +M+ K K +G+ N    N
Sbjct: 142 KIKEGDTKTVKELLTAALVISGNDAITSLAIKVAGSTQAFVDMMNKKCKDLGLTNAHMIN 201

Query: 179 ASGLHD----KNQITTARDQAILGILLRKNFPQYYKYFSIRKF--RYRNRIITNHNKLLN 232
            +GL D         T R+  +L   + K  P+  +Y  +       R     + N +L 
Sbjct: 202 PTGLTDYSIEDYNKMTTREMFLLARYIMKEHPEILEYTKMPSIVEADREFTAYSTNPILG 261

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSL-------RYKDDPIVAVVMGMPTSQERDQKALELIT 285
            +  I G+KTGYT  +G  ++ +          KD  ++ +  G  +   R   +  +  
Sbjct: 262 VIPEIQGLKTGYTGAAGRCLIATELKPGDGKTTKDLRLITITTGSKSDWSRYVVSKRVAN 321

Query: 286 SFLEKK 291
             L K 
Sbjct: 322 IALTKY 327


>gi|169351003|ref|ZP_02867941.1| hypothetical protein CLOSPI_01780 [Clostridium spiroforme DSM 1552]
 gi|169292065|gb|EDS74198.1| hypothetical protein CLOSPI_01780 [Clostridium spiroforme DSM 1552]
          Length = 342

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 108/252 (42%), Gaps = 13/252 (5%)

Query: 55  SSIVIDVNKNQMT--GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S IV++   NQ+   G  +D  +  AS++K+MT  +  E +      L+T I V  T   
Sbjct: 34  SYIVMEA-SNQVVIEGSNEDYIQSVASISKIMTCILAIENMD-----LDTIITVDDTINK 87

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S +Y+      +    +  L+ RS ND +    + ++    KF  +M++KA+++ + 
Sbjct: 88  AWGSGIYIHIGDKISLRDLLYGLMLRSGNDAALMIAKAVAKDVPKFVDMMNDKARELELH 147

Query: 173 NTIYKNASGLH--DKNQITTARDQAILGILLRKNFPQYYKYFSIRKF--RYRNRIITNHN 228
           NT + N +GL   D    +T  D A L     +N P + +    +++     N    N N
Sbjct: 148 NTTFSNPTGLDEEDNGNQSTVYDMARLMAYCHQN-PIFNEIVKTKEYVREDGNGTWHNKN 206

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           KLL       G KTG+T+ +   ++T  R     ++ V        E  QK  E     L
Sbjct: 207 KLLTNYKYCIGGKTGFTKKARRTLITMARKNGLDLIIVTFNCGNDFEFHQKKYEECFDLL 266

Query: 289 EKKTLKHQQTHR 300
           E+  +  +    
Sbjct: 267 EETKIFSRGIVE 278


>gi|170755502|ref|YP_001781401.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum B1 str.
           Okra]
 gi|169120714|gb|ACA44550.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           botulinum B1 str. Okra]
          Length = 378

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 121/271 (44%), Gaps = 16/271 (5%)

Query: 56  SIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +I ID +   +   K  +E    AS TK+MT  +  +Y       L+ +I +S+ A    
Sbjct: 45  AIAIDKDTGIVLFEKSANEIVPIASTTKIMTTLVALKYGD-----LDRKIEISENADKIR 99

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S +  ++    T  + +  L+ RS ND + A  E I+GS + F+ LM+  A +IG+ N+
Sbjct: 100 GSVVGYRKGEKITLRELLYGLMLRSGNDAAIAIAEGIAGSVEDFSKLMNEYASEIGLLNS 159

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS---IRKFRYR-NRIITNHNKL 230
            +    GL      +TA D A L     K +  + K  S   ++K  Y   R   N NK+
Sbjct: 160 HFITPHGLDKDEHYSTAYDLA-LATATAKKYELFNKIVSSKDVKKEEYNFTRDYHNINKI 218

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L K+   DG+KTGYT  +G  +VTS +   + I+ VV+          K    + +  + 
Sbjct: 219 LWKIPEADGVKTGYTGKAGKCLVTSSKINGNDIIIVVLNCTPRWNETTKIHNYVKNNYDF 278

Query: 291 KTL-----KHQQTHRKDNLSSTSLKKSLMIK 316
           K +        Q   ++   +    K ++I 
Sbjct: 279 KKICTKGDILDQAVFEEGSVNIIADKDIIIP 309


>gi|329122055|ref|ZP_08250663.1| serine-type D-Ala-D-Ala carboxypeptidase [Dialister micraerophilus
           DSM 19965]
 gi|327466862|gb|EGF12378.1| serine-type D-Ala-D-Ala carboxypeptidase [Dialister micraerophilus
           DSM 19965]
          Length = 323

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 75/261 (28%), Positives = 118/261 (45%), Gaps = 16/261 (6%)

Query: 48  LHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
           L      S  + D N  +  G K  E R YPAS TK++T  I  E        LN    +
Sbjct: 53  LPQVDAVSVAIADGNTGKFLGGKDSELRVYPASTTKILTCIIALEEGHD---KLNDNALI 109

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
           +  A  Q+ + L LK     + ++ +  ++  S ND + +  E + G  + F  LM+ KA
Sbjct: 110 TPNATKQDGTCLGLKPDLPISLQELLYGMMLVSGNDAAVSVAETVGGDYETFIKLMNAKA 169

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR--KFRYRN--- 221
           K IG  N+ + NA+GL DKN  TTA D A + +   KN   + K          YR+   
Sbjct: 170 KNIGAVNSNFVNANGLTDKNHYTTASDMAKIAVYAMKNQN-FRKIVKEPFHMMTYRDGTI 228

Query: 222 RIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           R I N N+ L       +GIKTG T  +G  +V S   +      VV+ +   + R +  
Sbjct: 229 RRIENRNEFLESGYEGANGIKTGMTEAAGDCLVASAEREGH---LVVVSIYNDENRWEDV 285

Query: 281 LELITSFLEKKTLKHQQTHRK 301
            +L+    +   +K+++ + K
Sbjct: 286 KKLLDYGFD--AIKNEEMYEK 304


>gi|300119331|ref|ZP_07057009.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           SJ1]
 gi|298723286|gb|EFI64050.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           SJ1]
          Length = 338

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 136/297 (45%), Gaps = 23/297 (7%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP 77
           ++++   L+   +  ++I++          + AK   S+I+ID N  ++   K +E    
Sbjct: 3   FLKKITILLLSFVITTLIVLYFYLYVNGPIIQAK---SAILIDANSGEVVYKKNEET-SI 58

Query: 78  AS--LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
            S  L+K+MT YI+ E L    + L+  + +S        S + +  K   T    + AL
Sbjct: 59  QSDTLSKLMTEYIVLEQLNKGNIQLDEVVQISNEVFRAETSPIQVTSKDKTTVRDLLHAL 118

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM-QNTIYKNASGLHDKNQI---TTA 191
           +    N  + A  E I+G+E  F  LM+ KAK++ + Q + + NA+G+++       TTA
Sbjct: 119 LLTGNNRSTLALAEHIAGNEDNFTQLMNEKAKQLKLPQPSPFLNATGMNNGTNKLSTTTA 178

Query: 192 RDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTG 243
            +   L   L  +FP       +    F +++  + N NK++       K+  +DG++T 
Sbjct: 179 IEVGKLATRLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKLQGVDGLQTS 238

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           ++ NS ++ V++ +  D  +++V++          +  +L+    +  +    Q  +
Sbjct: 239 FSTNSNYSFVSTAKRGDTRLISVILDADNENSTFIETKKLLQYGFDPSSYSALQAFK 295


>gi|153941233|ref|YP_001391113.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum F str.
           Langeland]
 gi|152937129|gb|ABS42627.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum F
           str. Langeland]
 gi|295319159|gb|ADF99536.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum F
           str. 230613]
          Length = 378

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 121/271 (44%), Gaps = 16/271 (5%)

Query: 56  SIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +I ID +   +   K  +E    AS TK+MT  +  +Y       L+ +I +S+ A    
Sbjct: 45  AIAIDKDTGIVLFEKSANEIVPIASTTKIMTTLVALKYGD-----LDRKIEISENADKIR 99

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S +  ++    T  + +  L+ RS ND + A  E I+GS + F+ LM+  A +IG+ N+
Sbjct: 100 GSVVGYRKGEKITLRELLYGLMLRSGNDAAIAIAEGIAGSVEDFSKLMNEYASEIGLLNS 159

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS---IRKFRYR-NRIITNHNKL 230
            +    GL      +TA D A L     K +  + K  S   ++K  Y   R   N NK+
Sbjct: 160 HFITPHGLDKDEHYSTAYDLA-LATATAKKYELFNKIVSSKDVKKEEYNFTRDYHNINKI 218

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L K+   DG+KTGYT  +G  +VTS +   + I+ VV+          K    + +  + 
Sbjct: 219 LWKIPEADGVKTGYTGKAGKCLVTSSKINGNDIIIVVLNCTPRWNETTKIHNYVKNNYDF 278

Query: 291 KTL-----KHQQTHRKDNLSSTSLKKSLMIK 316
           K +        Q   ++   +    K ++I 
Sbjct: 279 KKICTKGDILDQAVFEEGSVNIIADKDIIIP 309


>gi|81427894|ref|YP_394893.1| D-alanyl-D-alanine carboxypeptidase precursor [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78609535|emb|CAI54581.1| D-alanyl-D-alanine carboxypeptidase precursor [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 428

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 69/329 (20%), Positives = 126/329 (38%), Gaps = 51/329 (15%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +  + A+        ++I ID    Q+   K  D+    AS+TKM+T Y++ + ++  KL
Sbjct: 21  VQAATATSAPQVDASAAIAIDPQSGQVLYEKNADQVLPIASMTKMITAYVVLDQIKQGKL 80

Query: 99  HLNTQIP----VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
             N        + K +  +  + + L+    ++  +   A++  SAND +      ++GS
Sbjct: 81  KWNQTTKPDAAIYKLSQDKELTNVPLQADKAYSVRELYQAMLIASANDAAMMLANLVAGS 140

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGL--------------HDKNQITTARDQAILGIL 200
           +K F  LM  +  + G+++    + SGL               D     +A + AI+   
Sbjct: 141 QKNFVDLMRQQVSQWGIKDAKLYSVSGLNNQYLTGETYPGSAADAENEMSASEVAIVAQH 200

Query: 201 LRKNFPQYYKYFSIRKFRYRNRII-----TNHNKLLNKMHN------IDGIKTGYTRNSG 249
           L K FP+  +      F +  + I        N +L   +N      +DG+KTG T  +G
Sbjct: 201 LLKTFPEVLETTKQTAFTFGPKTIDETKMATWNLMLPGQNNAPKDYVVDGLKTGTTDKAG 260

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQE--RDQKALELITSFLEKKTLKHQQTHRKDNLSST 307
                +       I+ VVM    S +  R  +  +++    +      QQT         
Sbjct: 261 DCFTGTATKDGQRILTVVMHANGSDKGRRFIETNKVMQYVFDN----WQQTQ-------- 308

Query: 308 SLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
                  + K   T   F   D K   T+
Sbjct: 309 -------LVKKGATIKPFATADVKYGRTK 330


>gi|331002378|ref|ZP_08325896.1| hypothetical protein HMPREF0491_00758 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410194|gb|EGG89628.1| hypothetical protein HMPREF0491_00758 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 483

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 128/295 (43%), Gaps = 30/295 (10%)

Query: 22  IYIQRNIQL-MGKILFLSIIMISMA-SELHAKP---KYSSIVIDVNKNQMTGFKQ-DEPR 75
           I+ +  I L +  I   S+ + ++A  +  A        +I++D +   +   K   E  
Sbjct: 5   IFKKTIITLFLTFITVFSLPLKALAYVDWPANANILSEGAILMDADSGAVLYGKNIHEHY 64

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGI 132
           YPAS+TK++T  I+ E       +L+  +  SK A        S   L      T    +
Sbjct: 65  YPASITKILTALIVVE-----NCNLDDIVTFSKNAVYNVEAGSSSAGLDVGDTLTVRDCL 119

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
            A++ +SAN+ + A  E  +GS ++FA +M+ KA  +G  ++ + N SGL+  +  T+A 
Sbjct: 120 YAMLLQSANEAANALAEHTAGSIEEFANMMNQKASNLGCTDSHFVNPSGLNSPDHYTSAY 179

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFR-------YRNRIITNHNKLLNK-----MHNIDGI 240
           D A++      N P   +  S   +           + I NH+ +L K       N    
Sbjct: 180 DYALISRAAFMN-PIVTEIDSATYYNLPPSKRVPTGQTIYNHHSMLRKTSGNYYQNAICG 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT-SFLEKKTLK 294
           KTGYT  +G  +VT  R     ++ VV+    ++       EL+   F   K +K
Sbjct: 239 KTGYTTLAGNTLVTYARNDQIGLITVVLNG--NKTHYTDTQELLNFGFANFKNIK 291


>gi|330500999|ref|YP_004377868.1| D-alanyl-D-alanine endopeptidase [Pseudomonas mendocina NK-01]
 gi|328915285|gb|AEB56116.1| D-alanyl-D-alanine endopeptidase [Pseudomonas mendocina NK-01]
          Length = 293

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 61/268 (22%), Positives = 115/268 (42%), Gaps = 20/268 (7%)

Query: 34  ILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLY 87
           +L    +++S      A+PK      S+++ID+   Q       + R P AS+TK+MT  
Sbjct: 3   LLLCGSLVVSNLQAAPAQPKQELAAGSALLIDLKTGQELYSSNPDLRLPVASVTKLMTAM 62

Query: 88  IIFEYLQSKKLHLNTQIPVS-KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           ++ +     KL L+  +P++ +           ++  +  T    +   +  S N  + +
Sbjct: 63  VVLDA----KLPLDEVLPITIRDTQEMQGVFSRVRIGSEITRRDMLHLALMSSENRAAAS 118

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
                 G    F   M+ KA+ +GM N+ +   +GL  +  + TARD A++     + +P
Sbjct: 119 LAHHYPGGHAAFVAAMNAKARALGMHNSHFVEPTGLS-EQNVATARDLALMVKAANQ-YP 176

Query: 207 QYYKYFSIRK----FRYRNRII--TNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYK 259
             +++ +  +    FR  N  +   N N L+ K   NI+  KTG+T  +G  +V +    
Sbjct: 177 LIHQFSTDSEATVAFRKPNYTLGFRNTNALVRKADWNINLSKTGFTNAAGRCLVMATTIA 236

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSF 287
           + P+  VV+G          A  L    
Sbjct: 237 NRPVAFVVLGAFGKYTHMADANRLKRWM 264


>gi|312978130|ref|ZP_07789875.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus crispatus
           CTV-05]
 gi|310895105|gb|EFQ44174.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus crispatus
           CTV-05]
          Length = 433

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 66/270 (24%), Positives = 121/270 (44%), Gaps = 33/270 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKT 109
           S+I ID +  Q+   K        AS+TK++T+Y+  + +++ KL  + ++    P+ K 
Sbjct: 51  SAIAIDSDSGQILYAKNATKTLPIASMTKLVTVYLTLQAIKNHKLSWDQKVKPTAPIVKV 110

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A     S + LK    +T  Q   A +  SAN  +   G+ I+GS+K F   M  + KK 
Sbjct: 111 ANNAEYSNVPLKLGHSYTIRQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRAQVKKW 170

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++     A GL + N                 +A+D AI+G  L   FP+  +   + 
Sbjct: 171 GIEDAKIYTACGLPNGNLGKDAYPGVNKNAENTMSAKDMAIVGQKLISAFPEVLETTRLA 230

Query: 216 KFRYRN----RIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              +++      + N N +L  +      + +DG+KTG T  +G   + ++++    ++ 
Sbjct: 231 HLNFKDAGHVTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVQHNGARLLT 290

Query: 266 VVMGMP----TSQERDQKALELITSFLEKK 291
           VVMG      T   R ++  +L+     K 
Sbjct: 291 VVMGARHRDGTDPARFEQTKKLMNYVFTKY 320


>gi|228952885|ref|ZP_04114953.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228806795|gb|EEM53346.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 307

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 141/296 (47%), Gaps = 21/296 (7%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
           ++++   L+      ++I++          + AK   S+I+I+ N  ++   K +E P  
Sbjct: 3   FLKKFAILLLSFFITALIVLYFYLYVNGPIIQAK---SAILINANSGEIVYKKNEETPVQ 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            A+L+K+MT YI+ E L  +K+ L+  + +S        S + +      T    + AL+
Sbjct: 60  SAALSKLMTEYIVLEQLNDRKIQLDDLVQISNEVFRVETSPIQVTSNDKTTVRDLLHALL 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG-MQNTIYKNASGLH---DKNQITTAR 192
               N  + A  E I+G+E  F +LM+ KAK++  +Q + + N++G++   DK   TTA 
Sbjct: 120 LAGNNRSALALAEHIAGNEDNFTVLMNKKAKELKLLQPSPFLNSTGINNDTDKQSTTTAI 179

Query: 193 DQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGY 244
           D A L   L K+FP       +    F +++  + N NK++       K+  +DG++T +
Sbjct: 180 DAAKLAAKLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSF 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + N  ++ V++ +  D  +++V++          +  +L+    +  +    Q  +
Sbjct: 240 STNGNYSFVSTAKLGDTRLISVILDADEENISFIETKKLLQYGFDPSSYSALQAFK 295


>gi|300812512|ref|ZP_07092935.1| beta-lactamase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496511|gb|EFK31610.1| beta-lactamase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 428

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 65/300 (21%), Positives = 120/300 (40%), Gaps = 36/300 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKT 109
           ++I +D +  Q+   K    PR  AS+TK++T+Y+  + ++  KL   +       ++K 
Sbjct: 48  AAIAVDADSGQILYAKNATTPRQIASMTKLVTVYLTLQAIKQGKLSWTSTAKPTAAIAKI 107

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +     S + L     +T ++   A +  SAN  +    + +SG +  F   M       
Sbjct: 108 SQNTEYSNVPLTSGHAYTIKELYRATLIESANGAALTLAQAVSGDQVTFVKKMRELLTSW 167

Query: 170 GMQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++    NA GL               D     +A D AI+   L K+FP+  +  SI 
Sbjct: 168 GIKDAKIYNACGLANGSLGSAAYPGVGKDVENEMSATDMAIVCQKLLKDFPEVLQTTSIT 227

Query: 216 KFRYRNRI----ITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              + +      +TN N +L  + +      +DG+KTG T  +G     +++     I+ 
Sbjct: 228 SATFSSGSTQSQMTNWNWMLKGLSSYYSDLPVDGLKTGTTDKAGACFAGTVKKNGHRIIT 287

Query: 266 VVMGMPTSQ----ERDQKALELITSFLEKK---TLKHQQTHRKDNLSSTSLKKSLMIKKL 318
           VV+G   +      R  +  +L+    +     TLK   +    N       K    K +
Sbjct: 288 VVLGAKHANSQDPSRFVQTAKLMHYVYQNYTAVTLKKGSSISGANTVKVPEGKETSSKVV 347


>gi|294794892|ref|ZP_06760027.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella sp. 3_1_44]
 gi|294454254|gb|EFG22628.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella sp. 3_1_44]
          Length = 300

 Score =  198 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 116/259 (44%), Gaps = 18/259 (6%)

Query: 42  ISMASELHAKPKY----SSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSK 96
            S+A   +  P      + ++ID +  ++   K  +   +PAS TKM+TL    E    K
Sbjct: 44  ASVAQAAYITPPSTVGEAVVLIDADTKEILFAKNPDKWMHPASTTKMVTLLTALEL---K 100

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
              L+    +S  A +   S L ++     T E  +  ++  S ND +    E +SGS  
Sbjct: 101 GTQLDELATISSYATSMEESNLGVRVGDQITLEGVLEGMMVASGNDAAVVVAENVSGSVD 160

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
           KFA  M+  A K G +N+++ N  GL  K   +TARD A++     K +  +    +   
Sbjct: 161 KFAKDMTRIAAKAGAKNSVFLNPHGLTQKGHHSTARDLAMIAAYGMK-YQMFRDKVANDY 219

Query: 217 FR--YRNR---IITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           ++  Y+NR    I   N  + NK    +G+KTG+T  +G  ++ S       ++ V++  
Sbjct: 220 YKVPYQNRAPETIRTTNHFIRNKYPGANGLKTGFTNAAGECLIASATRNGHTMIVVML-- 277

Query: 271 PTSQERDQKALELITSFLE 289
                R  +A++ +    +
Sbjct: 278 -NDDNRWDEAVQFLDYGFK 295


>gi|30020624|ref|NP_832255.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
 gi|229044252|ref|ZP_04191925.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
 gi|229109961|ref|ZP_04239541.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
 gi|229127903|ref|ZP_04256888.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
 gi|29896176|gb|AAP09456.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
 gi|228655547|gb|EEL11400.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
 gi|228673482|gb|EEL28746.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
 gi|228725077|gb|EEL76361.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
          Length = 338

 Score =  198 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 140/296 (47%), Gaps = 21/296 (7%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
           ++++   L+      ++I++          + AK   S+I+I+ N  ++   K +E P  
Sbjct: 3   FLKKFAILLLSFFITALIVLYFYLYVNGPIIQAK---SAILINANSGEIVYKKNEETPVQ 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            A+L+K+MT YI+ E L  KK+ L+  + +S        S + +      T    + AL+
Sbjct: 60  SAALSKLMTEYIVLEQLNDKKIQLDDFVQISNEVFRVETSPIQVTSNDKTTVRDLLHALL 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG-MQNTIYKNASGLHDKNQI---TTAR 192
               N  + A  E I+G+E  F +LM+ KAK++  +Q + + N++G+++       TTA 
Sbjct: 120 LAGNNRSALALAEHIAGNEDNFTVLMNKKAKELKLLQPSPFLNSTGINNNTNKQSTTTAI 179

Query: 193 DQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGY 244
           D A L   L K+FP       +    F +++  + N NK++       K+  +DG++T +
Sbjct: 180 DAAKLAARLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSF 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + N  ++ V++ +  D  +++V++          +  +L+    +  +    Q  +
Sbjct: 240 STNGNYSFVSTAKLGDTRLISVILDADEENISFIETKKLLQYGFDPSSYSALQAFK 295


>gi|228901108|ref|ZP_04065313.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           4222]
 gi|228858534|gb|EEN02989.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           4222]
          Length = 338

 Score =  198 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 141/296 (47%), Gaps = 21/296 (7%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
           ++++   L+      ++I++          + AK   S+I+I+ N  ++   K +E P  
Sbjct: 3   FLKKFAILLLSFFITALIVLYFYLYVNGPIIQAK---SAILINANSGEIVYKKNEETPVQ 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            A+L+K+MT YI+ E L  +K+ L+  + +S        S + +      T    + AL+
Sbjct: 60  SAALSKLMTEYIVLEQLNDRKIQLDDFVQISNEVFRVETSPIQVTSNDKTTVRDLLHALL 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG-MQNTIYKNASGLHDKNQI---TTAR 192
               N  + A  E I+G+E  F +LM+ KAK++  +Q + + N++G+++       TTA 
Sbjct: 120 LAGNNRSALALAEHIAGNEDNFTVLMNKKAKELKLLQPSPFLNSTGINNDTNKQSTTTAI 179

Query: 193 DQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGY 244
           D A L   L K+FP       +    F +++  + N NK++       K+  +DG++T +
Sbjct: 180 DVAKLAARLIKDFPDVLNITKLTSYQFSFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSF 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + N  ++ V++ + +D  +++V++          +  +L+    +  +    Q  +
Sbjct: 240 STNGNYSFVSTAKLEDTRLISVILDADEENISFIETKKLLQYGFDPSSYSALQAFK 295


>gi|206973720|ref|ZP_03234638.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           H3081.97]
 gi|217960011|ref|YP_002338567.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH187]
 gi|222096095|ref|YP_002530152.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1]
 gi|229139202|ref|ZP_04267777.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
 gi|206747876|gb|EDZ59265.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           H3081.97]
 gi|217064880|gb|ACJ79130.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH187]
 gi|221240153|gb|ACM12863.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1]
 gi|228644261|gb|EEL00518.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
          Length = 338

 Score =  198 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 132/290 (45%), Gaps = 26/290 (8%)

Query: 34  ILFLSIIMISM----------ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
           IL LS ++ ++             + AK   S+I+ID +  ++   K +E P   A+L+K
Sbjct: 9   ILLLSFVITALIVLYFYLYVNGPIIQAK---SAILIDAHSGEVVYTKNEETPIQSATLSK 65

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MT YI  E L    + L+  + +S        S + +  K   T    +  L+    N 
Sbjct: 66  LMTEYITLEQLNEGTIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHTLLLTGNNR 125

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGM-QNTIYKNASGLHDKNQI---TTARDQAILG 198
            + A  E I+G+E KF  LM+ KAK + + Q++ + NA+G+++       TTA + A L 
Sbjct: 126 SALALAEHIAGNEDKFTQLMNEKAKHLKLSQSSPFLNATGMNNDTNKLSTTTAIEVAKLA 185

Query: 199 ILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGYTRNSGF 250
             L  +FP       +    F +++  + N NK++       K   +DG++T ++ N  +
Sbjct: 186 TQLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKHQGVDGLQTSFSTNGNY 245

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + V++ +  D  +++V++          +  +L+    +  +    Q  +
Sbjct: 246 SFVSTAKRGDTRLISVILDADNENSTFIETKKLLQYGFDPSSYSALQAFK 295


>gi|56967192|pdb|1XP4|A Chain A, Crystal Structure Of A Peptidoglycan Synthesis Regulatory
           Factor (Pbp3) From Streptococcus Pneumoniae
 gi|56967193|pdb|1XP4|B Chain B, Crystal Structure Of A Peptidoglycan Synthesis Regulatory
           Factor (Pbp3) From Streptococcus Pneumoniae
 gi|56967194|pdb|1XP4|C Chain C, Crystal Structure Of A Peptidoglycan Synthesis Regulatory
           Factor (Pbp3) From Streptococcus Pneumoniae
 gi|56967195|pdb|1XP4|D Chain D, Crystal Structure Of A Peptidoglycan Synthesis Regulatory
           Factor (Pbp3) From Streptococcus Pneumoniae
          Length = 379

 Score =  198 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 69/327 (21%), Positives = 133/327 (40%), Gaps = 33/327 (10%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKL 98
           +  ++A +     K+ +I ++ N  ++   K   +P   AS+TK++T+Y+++E L++  +
Sbjct: 2   VSTAVAQDFTIAAKH-AIAVEANTGKILYEKDATQPVEIASITKLITVYLVYEALENGSI 60

Query: 99  HLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
            L+T + +S            S +  + + Y T E+ + A +  SAN  + A  E I+GS
Sbjct: 61  TLSTPVDISDYPYQLTTNSEASNIPXEARNY-TVEELLEATLVSSANSAAIALAEKIAGS 119

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAILGIL 200
           EK F      K  + G+Q+    N +GL+              D+    +A D AI+   
Sbjct: 120 EKDFVDXXRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYDVAIVARN 179

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIKTGYTRNSGFNIVTSL 256
           L K +PQ  +        +    IT+ N  L          DG+KTG T  +G + V + 
Sbjct: 180 LIKKYPQVLEITKKPSSTFAGXTITSTNYXLEGXPAYRGGFDGLKTGTTDKAGESFVGTT 239

Query: 257 RYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKTLKHQQTHRKDNLSSTS 308
             K   ++ VV+           R      L       F  +K ++    ++        
Sbjct: 240 VEKGXRVITVVLNADHQDNNPYARFTATSSLXDYISSTFTLRKIVQQGDAYQDSKAPVQD 299

Query: 309 LKKSLMIKKLKRTYSQFKKIDAKAHST 335
            K+  +I          +++  ++  +
Sbjct: 300 GKEDTVIAVAPEDIYLIERVGNQSSQS 326


>gi|218232010|ref|YP_002367234.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           B4264]
 gi|229145140|ref|ZP_04273532.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
 gi|218159967|gb|ACK59959.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus B4264]
 gi|228638338|gb|EEK94776.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
          Length = 338

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 140/296 (47%), Gaps = 21/296 (7%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
           ++++   L+      ++I++          + AK   S+I+I+ N  ++   K +E P  
Sbjct: 3   FLKKFAILLLSFFITALIVLYFYLYVNGPIIQAK---SAILINANSGEIVYKKNEETPVQ 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            A+L+K+MT YI+ E L  +K+ L+  + +S        S + +      T    + AL+
Sbjct: 60  SAALSKLMTEYIVLEQLNDRKIQLDDLVQISNEVFRVETSPIQVTSNDKTTVRDLLHALL 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG-MQNTIYKNASGLHDKNQI---TTAR 192
               N  + A  E I+G+E  F +LM+ KAK++  +Q + + N++G+++       TTA 
Sbjct: 120 LAGNNRSALALAEHIAGNEDNFTVLMNKKAKELKLLQPSPFLNSTGINNNTNKQSTTTAI 179

Query: 193 DQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGY 244
           D A L   L K+FP       +    F +++  + N NK++       K+  +DG++T +
Sbjct: 180 DAAKLAARLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSF 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + N  ++ V++ +  D  +++V++          +  +L+    +  +    Q  +
Sbjct: 240 STNGNYSFVSTAKLGDTRLISVILDADEENISFIETKKLLQYGFDPSSYSALQAFK 295


>gi|296503088|ref|YP_003664788.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
 gi|296324140|gb|ADH07068.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
          Length = 338

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 140/296 (47%), Gaps = 21/296 (7%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
           ++++   L+      ++I++          + AK   S+I+I+ N  ++   K +E P  
Sbjct: 3   FLKKFAILLLSFFITALIVLYFYLYVNGPIIQAK---SAILINANSGEIVYKKNEETPVQ 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            A+L+K+MT YI+ E L  +K+ L+  + +S        S + +      T    + AL+
Sbjct: 60  SAALSKLMTEYIVLEQLNDRKIQLDDLVQISNEVFRVETSPIQVTSNDKTTVRDLLHALL 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG-MQNTIYKNASGLHDKNQI---TTAR 192
               N  + A  E I+G+E  F +LM+ KAK++  +Q + + N++G+++       TTA 
Sbjct: 120 LAGNNRSALALAEHIAGNEDNFTVLMNKKAKELQLLQPSPFLNSTGINNNTNKQSTTTAI 179

Query: 193 DQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGY 244
           D A L   L K+FP       +    F +++  + N NK++       K+  +DG++T +
Sbjct: 180 DAAKLAARLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSF 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + N  ++ V++ +  D  +++V++          +  +L+    +  +    Q  +
Sbjct: 240 STNGNYSFVSTAKLGDTRLISVILDADEENISFIETKKLLQYGFDPSSYSALQAFK 295


>gi|269836472|ref|YP_003318700.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785735|gb|ACZ37878.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 550

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 99/238 (41%), Gaps = 17/238 (7%)

Query: 62  NKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
           +  ++   K  D    PASLTK+ T  +  E        L+  I +++       S + L
Sbjct: 51  DTGEVLFDKGMDAETAPASLTKIFTAAVALETA-----PLDQLITIAEDDL-VGESAMGL 104

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISG--------SEKKFAILMSNKAKKIGMQ 172
                 T    +  ++  S ND + A    +S         S   F   +++ A+++G+ 
Sbjct: 105 VVGQDVTLRTLLYGMMLPSGNDAAMAIARGLSELSDGSSGESIAPFMERVNDLAQRLGLT 164

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           +T   N  GL +   +++ARD A + +    N P++ +      +      + N+N+LL 
Sbjct: 165 HTRLVNPHGLDEPGHVSSARDIAAITMYALGN-PEFRRIIGSPYYVDEGFELYNNNELLT 223

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
               + G KTG T  +G+ +V   +     I+AVV+G  T  +    A+ L+      
Sbjct: 224 SYTGLIGGKTGITDEAGYCLVEVAQRDGHTIIAVVLGS-TIDDWYTDAISLLDYGFAT 280


>gi|153813187|ref|ZP_01965855.1| hypothetical protein RUMOBE_03603 [Ruminococcus obeum ATCC 29174]
 gi|149830718|gb|EDM85809.1| hypothetical protein RUMOBE_03603 [Ruminococcus obeum ATCC 29174]
          Length = 441

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 114/263 (43%), Gaps = 19/263 (7%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           I+      A    ++++ID +   +   K  DE RYPAS TK+MT+ +  E    K +  
Sbjct: 43  IAGWPAAPAVTSETAVLIDADTGAVLYDKGMDEYRYPASTTKIMTMLVAIENSSPKDI-- 100

Query: 101 NTQIPVSKT---AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
              +  ++T     T + S +  +     T +   +A   +SAN+V     E + G+E  
Sbjct: 101 ---VTFTETGIRDVTWDSSNINAQLGETMTMKDCWMAAYIKSANEVCAQIAETVGGTEAN 157

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKY--FS 213
           F  +M+ KAK++G  +T + NASGL D+N  ++A D A +     +N  F Q  K   + 
Sbjct: 158 FVEMMNQKAKELGCTHTHFANASGLPDENHYSSAHDLAKIMRACLRNKRFRQVMKCSNYK 217

Query: 214 IRKFRYRN-RIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           I        R++  H  L+ K       +  G KTG++ ++   +VT+        +AV 
Sbjct: 218 IPATNLSEARVMHTHMPLMAKESNLYYADCIGGKTGFSTDAQHTLVTAAERNGRTYIAVT 277

Query: 268 MGMPTSQERDQKALELITSFLEK 290
           M           +  L     + 
Sbjct: 278 MRAADLGINCTDSTSLFNYAFDN 300


>gi|229150753|ref|ZP_04278967.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
 gi|228632840|gb|EEK89455.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
          Length = 338

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 141/296 (47%), Gaps = 21/296 (7%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
           ++++   L+      ++I++          + AK   S+I+I+ N  ++   K +E P  
Sbjct: 3   FLKKFAILLLSFFITALIVLYFYLYVNGPIIQAK---SAILINANSGEIVYKKNEETPVQ 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            A+L+K+MT YI+ E L ++K+ L+  + +S        S + +      T    + AL+
Sbjct: 60  SAALSKLMTEYIVLEQLNNRKIQLDDLVQISNEVFRVETSPIQVTSNDKTTVRDLLHALL 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG-MQNTIYKNASGLHDKNQI---TTAR 192
               N  + A  E I+G+E  F +LM+ KAK++  +Q + + N++G+++       TTA 
Sbjct: 120 LAGNNRSALALAEHIAGNEDNFTVLMNKKAKELKLLQPSPFLNSTGINNNTNKQSTTTAI 179

Query: 193 DQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGY 244
           D A L   L K+FP       +    F +++  + N NK++       K+  +DG++T +
Sbjct: 180 DAAKLAARLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSF 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + N  ++ V++ +  D  +++V++          +  +L+    +  +    Q  +
Sbjct: 240 STNGNYSFVSTAKLGDTRLISVILDADEENISFIETKKLLQYGFDPSSYSALQAFK 295


>gi|170761736|ref|YP_001787179.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408725|gb|ACA57136.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 378

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 71/271 (26%), Positives = 121/271 (44%), Gaps = 16/271 (5%)

Query: 56  SIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +I ID +   +   K  +E    AS TK+MT  +  +Y       L+ +I +S+ A    
Sbjct: 45  AIAIDKDTGIVLFEKSANEIVPIASTTKIMTTLVALKYGD-----LDRKIEISENADKIR 99

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S +  ++    T  + +  L+ RS ND + A  E I+GS + F+ LM+  A +IG+ N+
Sbjct: 100 GSVVGYRKGEKITLRELLYGLMLRSGNDAAIAIAEGIAGSVEGFSKLMNEYASEIGLLNS 159

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS---IRKFRYR-NRIITNHNKL 230
            +    GL      +TA D A L     K +  + +  S   ++K  Y   R   N NK+
Sbjct: 160 HFITPHGLDKDEHYSTAYDLA-LATATAKKYELFNEIVSSKDVKKEEYNFTRDYHNINKI 218

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L K+   DG+KTGYT  +G  +VTS +   + I+ VV+          K    + +  + 
Sbjct: 219 LWKIPEADGVKTGYTGKAGKCLVTSSKINGNDIIIVVLNCTPRWNETTKIHNYVKNNYDF 278

Query: 291 KTL-----KHQQTHRKDNLSSTSLKKSLMIK 316
           K +        Q   ++   +    K ++I 
Sbjct: 279 KKICTKGDILDQAVFEEGSVNIIADKDIIIP 309


>gi|293379842|ref|ZP_06625964.1| beta-lactamase [Lactobacillus crispatus 214-1]
 gi|290923614|gb|EFE00495.1| beta-lactamase [Lactobacillus crispatus 214-1]
          Length = 433

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/270 (24%), Positives = 120/270 (44%), Gaps = 33/270 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKT 109
           S+I ID +  Q+   K        AS+TK++T+Y+  + +++ KL  + ++    P+ K 
Sbjct: 51  SAIAIDSDSGQILYAKNATKTLPIASMTKLVTVYLTLQAIKNHKLSWDQKVKPTAPIVKV 110

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A     S + LK    +T  Q   A +  SAN  +   G+ I+GS+K F   M  + KK 
Sbjct: 111 ANNAEYSNVPLKLGHSYTIRQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRAQVKKW 170

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++     A GL + N                 +A+D AI+G  L   FP+  +   + 
Sbjct: 171 GIEDAKIYTACGLPNGNLGKDAYPGVNKNAENTMSAKDMAIVGQKLISAFPEVLETTRLA 230

Query: 216 KFRYRN----RIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              +++      + N N +L  +      + +DG+KTG T  +G   + ++++    ++ 
Sbjct: 231 HLNFKDAGHVTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVQHNGARLIT 290

Query: 266 VVMGMP----TSQERDQKALELITSFLEKK 291
           VVMG      T   R  +  +L+     K 
Sbjct: 291 VVMGARHRDGTDPARFMQTKKLMNFIFTKY 320


>gi|312140773|ref|YP_004008109.1| d-alanyl-d-alanine carboxypeptidase [Rhodococcus equi 103S]
 gi|311890112|emb|CBH49430.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus equi
           103S]
          Length = 444

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 57/270 (21%), Positives = 98/270 (36%), Gaps = 25/270 (9%)

Query: 37  LSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
             ++       L A+      ++ D++  Q+   K    RY PAS  K++   +  + L 
Sbjct: 104 CGVVTAPGTPPLPAEISATGWVLSDLDTGQVLAAKDPHGRYRPASTIKVLLALVALDELD 163

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
                L+T I  S  AA+   S + L     ++  Q +  L+ RS ND + A  + + G 
Sbjct: 164 -----LDTTIVASPEAASMEGSSVGLGAGGTYSNLQLMQGLVMRSGNDAAQALAQQLGG- 217

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           E+     M+ KA  +G  +T   + SGL      T+  D A+      +N P +    + 
Sbjct: 218 EQATVAKMNAKAASLGASDTRTASVSGLDGPGMSTSPYDLALFFRAAMQN-PTFAGLITT 276

Query: 215 RKFRYRN---------------RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
               +                   I N N+LL       G KTGYT ++    V      
Sbjct: 277 DTVMFPGHPADPTKPDDKPVDPYPIFNDNQLLANYPGALGGKTGYTDDARQTFVGGAERD 336

Query: 260 DDPIVAVVMGMPTSQER-DQKALELITSFL 288
              +   +M       R  ++   L+    
Sbjct: 337 GRRLAVTLMAADVLPIRPWEQVGRLLDYGW 366


>gi|218897511|ref|YP_002445922.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           G9842]
 gi|218543059|gb|ACK95453.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           G9842]
          Length = 338

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 141/296 (47%), Gaps = 21/296 (7%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
           ++++   L+      ++I++          + AK   S+I+I+ N  ++   K +E P  
Sbjct: 3   FLKKFAILLLSFFITALIVLYFYLYVNGPIIQAK---SAILINANSGEIVYKKNEETPVQ 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            A+L+K+MT YI+ E L  +K+ L+  + +S        S + +      T    + AL+
Sbjct: 60  SAALSKLMTEYIVLEQLNDRKIQLDDFVQISNEVFRVETSPIQVTSNDKTTVRDLLHALL 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG-MQNTIYKNASGLHDKNQI---TTAR 192
               N  + A  E I+G+E  F +LM+ KAK++  +Q + + N++G+++       TTA 
Sbjct: 120 LAGNNRSALALAEHIAGNEDNFTVLMNKKAKELKLLQPSPFLNSTGVNNDTNKQSTTTAI 179

Query: 193 DQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGY 244
           D A L   L K+FP       +    F +++  + N NK++       K+  +DG++T +
Sbjct: 180 DVAKLAARLIKDFPDVLNITKLTSYQFSFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSF 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + N  ++ V++ + +D  +++V++          +  +L+    +  +    Q  +
Sbjct: 240 STNGNYSFVSTAKLEDTRLISVILDADEENISFIETKKLLQYGFDPSSYSALQAFK 295


>gi|206971597|ref|ZP_03232547.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH1134]
 gi|229070033|ref|ZP_04203307.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
 gi|229079727|ref|ZP_04212260.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
 gi|206733582|gb|EDZ50754.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH1134]
 gi|228703567|gb|EEL56020.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
 gi|228713088|gb|EEL64989.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
          Length = 338

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 141/296 (47%), Gaps = 21/296 (7%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
           ++++   L+      ++I++          + AK   S+I+I+ N  ++   K +E P  
Sbjct: 3   FLKKFAILLLSFFITALIVLYFYLYVNGPIIQAK---SAILINANSGEIVYKKNEETPVQ 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            A+L+K+MT YI+ E L  +K+ L+  + +S        S + +      T    + AL+
Sbjct: 60  SAALSKLMTEYIVLEQLNDRKIQLDDLVQISNEVFRVETSPIQVTSNDKTTVRDLLHALL 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG-MQNTIYKNASGLH---DKNQITTAR 192
               N  + A  E I+G+E  F +LM+ KAK++  +Q + + N++G++   DK   TTA 
Sbjct: 120 LAGNNRSALALAEHIAGNEDNFTVLMNKKAKELKLLQPSPFLNSTGINNDTDKQSTTTAI 179

Query: 193 DQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGY 244
           D A L   L K+FP       +    F +++  + N NK++       K+  +DG++T +
Sbjct: 180 DAAKLAAKLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSF 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + N  ++ V++ +  D  +++V++          +  +L+    +  +    Q  +
Sbjct: 240 STNGNYSFVSTAKLGDTRLISVILDADEENISFIETKKLLQYGFDPSSYSALQAFK 295


>gi|291521155|emb|CBK79448.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus catus GD/7]
          Length = 438

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 59/230 (25%), Positives = 106/230 (46%), Gaps = 22/230 (9%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           ++ VIDV+  ++  +K  D+  YPAS+TK++T  ++ E       +L+  I  S+     
Sbjct: 69  AACVIDVDSGEILYYKNMDDRHYPASITKVLTGLLLIE-----NANLDDTITFSQDCWNG 123

Query: 113 ---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
               N   + + +    T    + A++  SAN+V     +F+SGS   F  LM+ +AK +
Sbjct: 124 LNYYNDMNIGILDGEQLTVNDALHAILMSSANEVCNGAAKFVSGSVSAFCDLMNERAKAL 183

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-------RNR 222
           G  NT + N +GLHD +  T+A D A++     +N P + +     ++            
Sbjct: 184 GCTNTHFVNPNGLHDPDHYTSAHDMALISREAIQN-PIFREITGCTEYTVASTNLRPEGF 242

Query: 223 IITNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            +++ +++L           G KTGYT  +   +VT        +  VVM
Sbjct: 243 PLSHKHQMLMYTKYHYDACIGGKTGYTSEAKNTLVTYAEKDGHTLACVVM 292


>gi|229190640|ref|ZP_04317636.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
 gi|228592773|gb|EEK50596.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
          Length = 338

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 140/296 (47%), Gaps = 21/296 (7%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
           ++++   L+      ++I++          + AK   S+I+I+ N  ++   K +E P  
Sbjct: 3   FLKKFAILLLSFFITALIVLYFYLYVNGPIIQAK---SAILINANSGEIVYKKNEETPVQ 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            A+L+K+MT YI+ E L  +K+ L+  + +S        S + +      T    + AL+
Sbjct: 60  SAALSKLMTEYIVLEQLNDRKIQLDDLVQISNEVFRVETSPIQVTSNDKTTVRDLLHALL 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG-MQNTIYKNASGLHDKNQI---TTAR 192
               N  + A  E I+G+E  F ILM+ KAK++  +Q + + N++G+++       TTA 
Sbjct: 120 LAGNNRSALALAEHIAGNEDNFTILMNKKAKELKLLQPSPFLNSTGINNNTNKQSTTTAI 179

Query: 193 DQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGY 244
           D A L   L K+FP       +    F +++  + N NK++       K+  +DG++T +
Sbjct: 180 DAAKLAARLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSF 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + N  ++ V++ +  D  +++V++          +  +L+    +  +    Q  +
Sbjct: 240 STNGNYSFVSTAKLGDTRLISVILDADEENISFIETKKLLQYGFDPSSYSALQAFK 295


>gi|282849251|ref|ZP_06258636.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella parvula ATCC
           17745]
 gi|282580955|gb|EFB86353.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella parvula ATCC
           17745]
          Length = 285

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 117/259 (45%), Gaps = 18/259 (6%)

Query: 42  ISMASELHAKPKY----SSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSK 96
            S+A   +  P      + ++ID +  ++   K  +   +PAS TKM+TL    E    K
Sbjct: 29  ASVAQAAYIAPPSTVGEAVVLIDADTKEILFAKNPDKWMHPASTTKMVTLLTALEL---K 85

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
              L+    +S  A +   S L ++     T E  +  ++  S ND +    E +SGS  
Sbjct: 86  GTQLDELATISSYATSMEESNLGVRVGDQITLEGVLEGMMVASGNDAAVVVAENVSGSVD 145

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
           KFA  M+  A K G +N+++ N  GL  K   +TARD A++     K +  +    +   
Sbjct: 146 KFAKDMTRIAAKAGAKNSVFLNPHGLTQKGHHSTARDLAMIAAYGMK-YQMFRDKVANDY 204

Query: 217 FR--YRNR---IITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           ++  Y+NR    I   N  + NK    +G+KTG+T  +G  ++ S   K   ++ V++  
Sbjct: 205 YKVPYQNRAPETIRTTNHFIRNKYPGANGLKTGFTNAAGECLIASATRKGHTMIVVML-- 262

Query: 271 PTSQERDQKALELITSFLE 289
                R  +A++ +    +
Sbjct: 263 -NDDNRWDEAVQFLDYGFK 280


>gi|289422780|ref|ZP_06424618.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus
           anaerobius 653-L]
 gi|289156810|gb|EFD05437.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus
           anaerobius 653-L]
          Length = 313

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 128/300 (42%), Gaps = 38/300 (12%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSS--------IVIDVNKNQMTGFKQ-D 72
           + I++   +   ++  + I+    S + A+ K           +++D    ++   K  D
Sbjct: 1   MKIKKINSIFAALVLSTGILTYFTSGVLAEGKEDFNSLKSKYMVLMDYESGKIIYKKNAD 60

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           +  YPAS TK+ T Y + +  Q     LN +I +  T      S +YL+E   FTT Q +
Sbjct: 61  QKIYPASTTKIWTAYCVLQKCQD----LNEKIKIG-TMPEIEGSSMYLEEGEVFTTRQLL 115

Query: 133 LALITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
            +L+  S+NDV+        G  E+KF   M+++AKK G  +T + N  GL D +  TTA
Sbjct: 116 ESLLIHSSNDVAYVLARHYGGGDERKFIDFMNSEAKKFGFNHTHFNNPHGLPDTDHYTTA 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYR-------NRIITNHNKLLN------------ 232
            +   +  +   N        + +   ++       +R + N NK LN            
Sbjct: 176 EEMTNMARIAYGNDI-IKSIVAKKSVTFKKSNEIKLDRELYNSNKFLNSNMQMNYNGKDI 234

Query: 233 --KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
             K   +DGIKTGYT ++G  +V +       +++ V   P+       +  L+    E 
Sbjct: 235 PMKYDVVDGIKTGYTDDAGNCLVATGTKNKIRMISGVFFAPSGSL-YHDSRFLLDYGFEN 293


>gi|257867724|ref|ZP_05647377.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus casseliflavus
           EC30]
 gi|257874051|ref|ZP_05653704.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus casseliflavus
           EC10]
 gi|257801807|gb|EEV30710.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus casseliflavus
           EC30]
 gi|257808215|gb|EEV37037.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus casseliflavus
           EC10]
          Length = 444

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 127/303 (41%), Gaps = 49/303 (16%)

Query: 33  KILFLSII--MISMASE------------LHAKPKYSSIVIDVNKNQMTGFKQDEP-RYP 77
            ILF +++  ++S A +            + AK  YS   ID +  ++   +  E     
Sbjct: 16  AILFAAVVIPLVSYADDTAMSIEEIQDFSIDAKAAYS---IDFDTGKVLYDQDGETAMGI 72

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGIL 133
           AS+TK+++LY++ E ++   +  +  +P+S  AA    + N S + L +   +T +    
Sbjct: 73  ASITKIISLYLVAEQVEQGTIAWDDPVPISDYAANLSVSPNLSNVPLHQDVTYTVKDLYD 132

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD--------- 184
           A   +SAN    A  E I+GSE  F  LM  K +  G+ +    NASGL++         
Sbjct: 133 ASYIQSANAAIVALAELIAGSESAFVDLMQEKVQSWGITDAKIVNASGLNNAYLGENIYP 192

Query: 185 -----KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL--- 231
                     +A+D A++   L ++FP   +  S+   ++         + N N +L   
Sbjct: 193 GSTSTDENELSAKDVALIARHLLQDFPDVLEVTSLSTKQFGEGSYSPVEMVNWNWMLPGF 252

Query: 232 -NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG----MPTSQERDQKALELITS 286
            N    +DG+KTG T  +G   V +       I+ VV+           R  +   L+  
Sbjct: 253 TNTKDGVDGLKTGTTDMAGACFVGTAVKDGQRIITVVLNVNGHAENPSVRFIETGRLMDY 312

Query: 287 FLE 289
             +
Sbjct: 313 SFD 315


>gi|46204603|ref|ZP_00049748.2| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 391

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 87/221 (39%), Positives = 125/221 (56%), Gaps = 6/221 (2%)

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MTLY++FE L+  +  L++ + +S  AA     +         T      A+  RS   V
Sbjct: 1   MTLYMLFEQLEKGRYELDSPLTISANAAAPGARRRLGLAHPASTILGLRTAIKCRSVTQV 60

Query: 144 ST------AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
                      E I+GSE +FA +M+ KAK +GM  T Y NASGL D +QITTA D  IL
Sbjct: 61  WPTSIRLPPSRENIAGSEPRFAEMMTRKAKALGMSRTHYANASGLPDPDQITTAHDLTIL 120

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR 257
              ++  FP+YY+YF  R F +R R+I NHN LL  +  +DGIKTGYTR+SGFN++T+ +
Sbjct: 121 ARAIQDRFPRYYRYFQTRSFAFRGRVIGNHNHLLGNVEGVDGIKTGYTRDSGFNLMTAAK 180

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
             D  IVA+V+G  +   RD+   +L+ + L +     +QT
Sbjct: 181 LGDRQIVAIVLGGKSGASRDRIMADLVRANLPRAYAGARQT 221


>gi|281492939|ref|YP_003354919.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactococcus lactis
           subsp. lactis KF147]
 gi|281376591|gb|ADA66077.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactococcus lactis
           subsp. lactis KF147]
          Length = 435

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 73/333 (21%), Positives = 134/333 (40%), Gaps = 38/333 (11%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQ--DEP 74
           + I ++     +S+ ++S  S   A             S+I ID +  ++   +   D  
Sbjct: 2   KKIAIIFCSFLISLSVLSGFSVSAATTPTTNDFTVAAKSAIAIDASSGKILYAQNADDAS 61

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQ 130
              AS+TK++T Y++++ +   KL  NT++P+S  A       N S + L +   +T + 
Sbjct: 62  TRIASITKLLTAYLVYKNVAENKLTWNTKVPISDYAYELTQNSNASNIPLAQNGQYTVKD 121

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN---- 186
            + AL+  SAN  + A  E I+GSE KF  +M+ + K  G+ ++   NASGL + +    
Sbjct: 122 LLNALLLPSANSAAVALAEKIAGSEPKFVDMMTKQMKDWGITDSHLVNASGLPNDDLNGH 181

Query: 187 ----------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NRIITNHNKLL 231
                      I +A+  A L   L ++FP+  +     +  +         +TN N++L
Sbjct: 182 IYPGSGASATNIMSAKAVATLSYHLIQDFPEILQITKKTEIPFDTGNEAKMTLTNTNQML 241

Query: 232 NKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           +        +DG+KTG T         +       I+ VV+        +     L    
Sbjct: 242 SGFSTSRTGVDGLKTGSTSFQIDCFAGTTNQNGFRIITVVLEATDPAADNSTPFTLTNQL 301

Query: 288 LEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKR 320
           +       + T       S    K + +   K 
Sbjct: 302 MNYVYGHWRTTSLVQKNQSLDDFKEITVTDGKE 334


>gi|225867886|ref|YP_002743834.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701162|emb|CAW98055.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus equi
           subsp. zooepidemicus]
          Length = 412

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 71/341 (20%), Positives = 149/341 (43%), Gaps = 32/341 (9%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
           + + +   IL +S +     ++ +      +I ++++  ++   K  D+    ASL+K++
Sbjct: 2   KKVLIALTILAISCLAYPAQADHYDISAKHAIAVELDSGKILYEKDADKTVSVASLSKVL 61

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           T Y++++ +Q+ KL  ++ + +S            S + L  +  +T ++ + ALI  +A
Sbjct: 62  TAYLVYKEVQAGKLKWDSSVTISNYPYELTTNYTISNVPLDAR-KYTVKELLKALIVTNA 120

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKN 186
           N  + A  E I G+E KF   M  + K+ G+ +    NASGL               D +
Sbjct: 121 NSPAIALAEKIGGTEAKFVDKMIAQLKEWGITDAKVVNASGLPNHILGEHIYPGSSLDDD 180

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIKT 242
              +A D A++   L K FP+  K  S  +  + ++ I ++N +L  M      +DG+  
Sbjct: 181 NQFSAADLALVTSHLLKEFPEVLKLSSQVQAEFNHQQIFSYNYMLKGMPNYRDGVDGLFV 240

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE--------LITSFLEKKTLK 294
            Y+   G + + +    +  I+ VV+    +Q+ D             ++T F +   L+
Sbjct: 241 SYSEKGGSSFLATSVENNMRIITVVLNADHAQDNDTAVFTATNQLLQYVLTHFKKVVVLE 300

Query: 295 HQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
             +  +   L      +  +    K+  +  K +D K+ +T
Sbjct: 301 KGKPDQLKALPVLDSPQKKIQLVPKKKLTMIKALDDKSKTT 341


>gi|168184525|ref|ZP_02619189.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf]
 gi|237795257|ref|YP_002862809.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           botulinum Ba4 str. 657]
 gi|182672383|gb|EDT84344.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf]
 gi|229261495|gb|ACQ52528.1| putative D-alanyl-D-alanine carboxypeptidase DacB [Clostridium
           botulinum Ba4 str. 657]
          Length = 378

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 122/271 (45%), Gaps = 16/271 (5%)

Query: 56  SIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +I ID +   +   K  +E    AS TK+MT  +  +Y       L+ +I +S+ A    
Sbjct: 45  AIAIDKDTGIVLFEKSANEIVPIASTTKIMTTLVALKYGD-----LDRKIEISENADKIR 99

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S +  ++    T  + +  L+ RS ND + A  E I+GS + F+ LM+  A +IG+ N+
Sbjct: 100 GSVVGYRKGEKITLRELLYGLMLRSGNDAAIAIAEGIAGSIEGFSKLMNEYASEIGLLNS 159

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS---IRKFRYR-NRIITNHNKL 230
            +    GL      +TA D A L     K +  + K  S   ++K  Y   R   N NK+
Sbjct: 160 HFITPHGLDKDEHYSTAYDLA-LATATAKKYELFNKIVSSKDVKKEEYNFTRDYQNINKI 218

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L K+   DG+KTGYT  +G  +VTS +   + I+ VV+          K    + +  + 
Sbjct: 219 LWKIPEADGVKTGYTGKAGKCLVTSSKINGNDIIIVVLNCTPRWNETTKIHNYVKNNYDF 278

Query: 291 KTLKHQ-----QTHRKDNLSSTSLKKSLMIK 316
           K +  +     Q   ++   +    K ++I 
Sbjct: 279 KKICAKGDILDQAVFEEGSVNIIADKDIIIP 309


>gi|298249991|ref|ZP_06973795.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
           racemifer DSM 44963]
 gi|297547995|gb|EFH81862.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
           racemifer DSM 44963]
          Length = 321

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 108/252 (42%), Gaps = 25/252 (9%)

Query: 56  SIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ- 113
           + ++D +   +    K  E    AS TK+MT  +  +     K  LN  + + + A  + 
Sbjct: 64  AYLVDDDTGNVLVNVKGRERVPMASTTKIMTAILTID-----KADLNQVVTIKQDAVDEA 118

Query: 114 ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
              N S   L        +  + AL+  S +D +TA  + ++GS+ +F  +M+  AK++ 
Sbjct: 119 KVHNGSNAQLVIGDQIRLKDLLYALMLPSGDDAATAIADSVAGSQTQFVTMMNAYAKQLK 178

Query: 171 MQNTIYKNASGL--------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF----- 217
           +QNT Y NA GL         D N  TT  D   L     +N P + +   ++K+     
Sbjct: 179 LQNTHYINADGLTYEGKDGKPDPNHYTTGEDLVKLTRYALRN-PLFAQIVQLQKYVLPAS 237

Query: 218 -RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
             +        + +L+    + G+KTG+T  +G+ +V S       +V  V+     +ER
Sbjct: 238 GVHHAYTWETTDTMLSTYAGLTGVKTGFTGEAGYCLVFSAYSSGHRLVGAVLDAKDEEER 297

Query: 277 DQKALELITSFL 288
            + A  L+    
Sbjct: 298 FKDASSLLDWAF 309


>gi|110598043|ref|ZP_01386322.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium ferrooxidans
           DSM 13031]
 gi|110340302|gb|EAT58796.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium ferrooxidans
           DSM 13031]
          Length = 486

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 72/315 (22%), Positives = 134/315 (42%), Gaps = 40/315 (12%)

Query: 2   LQQKIQSSAKKTFLTYPYGSIY--------IQRNIQLMGKILFLSIIMISMASELHAKPK 53
           +Q++  ++A    +  P+  ++         +  +  +G   F     I++ + LHA+P 
Sbjct: 23  MQEQFSTAA----ICRPWTPLFRKSRKHLPARARVLTLGICFFAFTASIALPALLHAEPG 78

Query: 54  Y----------SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
                      S IV D+  +++   K  D P  PASLTK++T  +  E  +     L+ 
Sbjct: 79  NGSYQIQAPVDSYIVKDLCSSRVVMAKDIDRPVSPASLTKILTCIMAIESGK-----LDQ 133

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
            + +++ +    PSK   +          + A +  S+ND + A    +SGS   F   M
Sbjct: 134 DVVITRESTNVEPSKAGFRVGERIRLLDLVKAAMVNSSNDAAFAIAIHLSGSVDAFVASM 193

Query: 163 SNKAKKIGMQNTIYKNASGLHD---KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
           +++A+ IGM+N+ + N +G          +TA D   L     +N P +     + +  +
Sbjct: 194 NSRARAIGMRNSRFTNPAGFDKGIYAGNTSTAGDLLCLTEYSVRN-PVFNAVARLDRAVF 252

Query: 220 ------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                 +   +  HNKLL +     GIKTGYT  +G  ++      +  I+ V++   T 
Sbjct: 253 VEQSTRKVYSLKTHNKLLGRYPYAVGIKTGYTGRAGRCLIGRAIKDNRDILLVMLNSRT- 311

Query: 274 QERDQKALELITSFL 288
            +R   A E+    L
Sbjct: 312 -DRWNVAAEMFDRAL 325


>gi|152974802|ref|YP_001374319.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023554|gb|ABS21324.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH
           391-98]
          Length = 423

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 74/336 (22%), Positives = 136/336 (40%), Gaps = 36/336 (10%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYS-----------SIVIDVNKNQMTGFKQD 72
            ++ +  +  I    +  + + +E   +P  +           ++ ID     +   K  
Sbjct: 4   CKKIMFFVLVICLFFVTPLPLHAETGMEPAPAPGQGPNVFGKFAVSIDAKTGDVLYDKNA 63

Query: 73  EPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK--EKTYFTTE 129
               +PAS+TK++T  ++ E+ +        Q  +S+ A  Q  S   L+          
Sbjct: 64  HEHAFPASMTKVLTAILLMEHTKP-----EEQFTLSQAALDQEKSNYQLEFQAGETVDRN 118

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
             ++ L+  SANDV+ A GE I GS + FA +M+ KAK++G  ++ +   +GLHD N  T
Sbjct: 119 TALMILMVLSANDVAYAIGEHIGGSIENFAHMMNEKAKQLGATDSHFVTPNGLHDPNHYT 178

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NH-NKLLNKMHNIDGIKTGY 244
           TA D A++   ++K +P+  +  + ++        T    N  N   N      G KTG+
Sbjct: 179 TAYDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKANYFENPYS--IGGKTGF 235

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT--------LKHQ 296
           T  +   +V       + I+ VVM     +   +   ++      + T          H+
Sbjct: 236 TNEARNTLVLLNEKDGNRIINVVMASQKPEI-YEDMKQMAEYAFPQFTKQLVLDKNYWHE 294

Query: 297 QTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
           +    D      L+KS  +   K      K +  KA
Sbjct: 295 RATYLDRDIDCELEKSAELMLKKGEGKNVKTVFRKA 330


>gi|226949097|ref|YP_002804188.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           botulinum A2 str. Kyoto]
 gi|226843082|gb|ACO85748.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           botulinum A2 str. Kyoto]
          Length = 378

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 121/271 (44%), Gaps = 16/271 (5%)

Query: 56  SIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +I ID +   +   K  +E    AS TK+MT  +  +Y       L+ +I +S+ A    
Sbjct: 45  AIAIDKDTGIVLFEKSANEIVPIASTTKIMTTLVALKYGD-----LDRKIEISENADKIR 99

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S +  ++    T  + +  L+ RS ND + A  E I+GS + F+ LM+  A +IG+ N+
Sbjct: 100 GSVVGYRKGEKITLRELLYGLMLRSGNDAAIAIAEGIAGSIEGFSKLMNEYASEIGLLNS 159

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS---IRKFRYR-NRIITNHNKL 230
            +    GL      +TA D A L     K +  + K  S   ++K  Y   R   N NK+
Sbjct: 160 HFITPHGLDKDEHYSTAYDLA-LATATAKKYELFNKIVSSKDVKKEEYNFTRDYQNINKI 218

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L K+   DG+KTGYT  +G  +VTS +   + I+ VV+          K    + +  + 
Sbjct: 219 LWKIPEADGVKTGYTGKAGKCLVTSSKINGNDIIIVVLNCTPRWNETTKIHNYVKNNYDF 278

Query: 291 KTL-----KHQQTHRKDNLSSTSLKKSLMIK 316
           K +        Q   ++   +    K ++I 
Sbjct: 279 KKICTRGDILDQAVFEEGSVNIIADKDIIIP 309


>gi|294793071|ref|ZP_06758217.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella sp. 6_1_27]
 gi|294456016|gb|EFG24380.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella sp. 6_1_27]
          Length = 300

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 117/259 (45%), Gaps = 18/259 (6%)

Query: 42  ISMASELHAKPKY----SSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSK 96
            S+A   +  P      + ++ID +  ++   K  +   +PAS TKM+TL    E    K
Sbjct: 44  ASVAQAAYITPPSTVGEAVVLIDADTKEILFAKNPDKWMHPASTTKMVTLLTALEL---K 100

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
              L+    +S  A +   S L ++     T E  +  ++  S ND +    E +SGS  
Sbjct: 101 GTQLDELATISSYATSMEESNLGVRVGDQITLEGVLEGMMVASGNDAAIVVAENVSGSVD 160

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
           KFA  M+  A K G +N+++ N  GL  K   +TARD A++     K +  +    +   
Sbjct: 161 KFAKDMTRIAAKAGAKNSVFLNPHGLTQKGHHSTARDLAMIAAYGMK-YQMFRDKVANDY 219

Query: 217 FR--YRNR---IITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           ++  Y+NR    I   N  + NK    +G+KTG+T  +G  ++ S   K   ++ V++  
Sbjct: 220 YKVPYQNRAPETIRTTNHFIRNKYPGANGLKTGFTNAAGECLIASATRKGHTMIVVML-- 277

Query: 271 PTSQERDQKALELITSFLE 289
                R  +A++ +    +
Sbjct: 278 -NDDNRWDEAVQFLDYGFK 295


>gi|257869614|ref|ZP_05649267.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus gallinarum EG2]
 gi|257803778|gb|EEV32600.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus gallinarum EG2]
          Length = 444

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 122/304 (40%), Gaps = 47/304 (15%)

Query: 30  LMGKILFLSIIMISMASE------------LHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
           L        I +IS A E            + AK  +S   +D +  ++   ++ E P  
Sbjct: 15  LATLFFIAGIPLISHAEETTFTAEEIKNFSIDAKAAFS---VDFDTGKILYDQEGETPMG 71

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGI 132
            AS+TK+++LY++ E ++  KL     I +S+ A     T + S + L     +T +   
Sbjct: 72  IASVTKIISLYLVAEQVKEGKLTWEDPIEISQYASDLSVTPDLSNVPLHRDVQYTVKDLY 131

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-------- 184
            A   +SAN    A  E I+GSE  F   M +K  + G+ +    NASGL++        
Sbjct: 132 EASYIQSANAAVVALAEKIAGSEPAFVDQMKDKLTEWGITDAKIVNASGLNNTYLGENLY 191

Query: 185 ------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNK 233
                      +A+D AI+   L ++FP+  +  S     +         + N N +L  
Sbjct: 192 PGSTSTDENELSAKDVAIVARHLLQDFPEVLEVTSTVTKTFGEGSYSPVEMVNWNWMLPG 251

Query: 234 M----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG----MPTSQERDQKALELIT 285
                  +DG+KTG T  +G   V +       I+ VV+           R  +  +L+ 
Sbjct: 252 FINAKDGVDGLKTGTTDLAGACFVGTAVRDGQRIITVVLNVNGHAENPSVRFTETGKLMD 311

Query: 286 SFLE 289
              +
Sbjct: 312 YSFD 315


>gi|327478643|gb|AEA81953.1| D-alanyl-D-alanine endopeptidase [Pseudomonas stutzeri DSM 4166]
          Length = 312

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/283 (23%), Positives = 124/283 (43%), Gaps = 22/283 (7%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP------KYSSIVIDVNKNQMTGFKQDEPRYP-A 78
           +  + +  +LF  +  + +     AKP        S++++D+N N++      +   P A
Sbjct: 2   KLRRTVASLLFACLASLPVIHAQAAKPMVQELASGSALLVDLNTNEVLYSSNPDMVVPIA 61

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           S+TK+MT  ++ +     KL L+  +PV+ + A         ++  +  +  + +L  + 
Sbjct: 62  SVTKLMTAMVVLDA----KLPLDQALPVTIRDAKEMQGVYSRVRIGSEISRREMLLLTLM 117

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S N  + +      G    F   M+ KA+ +GM  T Y   +GL ++N +++A D   L
Sbjct: 118 SSENRAAASLAHHYPGGYAAFIQAMNAKARALGMSRTHYVEPTGLSERN-VSSANDLVKL 176

Query: 198 GILLRKNFPQYYKYFSIRK----FRYRNRII--TNHNKLLNK-MHNIDGIKTGYTRNSGF 250
            I   + +P   ++ +  +    FR  N  +   N N L+ K   +I   KTG+T  +G 
Sbjct: 177 -IRASRQYPLIQQFSTTDEKTVAFRKPNYTLGFRNTNALVRKNNWDIQLSKTGFTNAAGH 235

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
            +V S   K  P+  VV+           A  L   +LE  T+
Sbjct: 236 CLVMSTTMKQRPVAFVVLDAFGKYTHMADANRL-KKWLETGTV 277


>gi|262047823|ref|ZP_06020773.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus
           MV-3A-US]
 gi|260571880|gb|EEX28451.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus
           MV-3A-US]
          Length = 433

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/270 (24%), Positives = 120/270 (44%), Gaps = 33/270 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQI----PVSKT 109
           S+I ID +  Q+   K        AS+TK++T+Y+  + +++ KL  + ++    P+ K 
Sbjct: 51  SAIAIDSDSGQILYAKNATKTLPIASMTKLVTVYLTLQAIKNHKLSWDQKVKPTAPIVKV 110

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A     S + LK    +T  Q   A +  SAN  +   G+ I+GS+K F   M  + KK 
Sbjct: 111 ANNAEYSNVPLKLGHSYTIRQLYQATLIESANGAAMLLGQTIAGSQKAFIDQMRAQVKKW 170

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++     A GL + N                 +A+D AI+G  L   FP+  +   + 
Sbjct: 171 GIEDAKIYTACGLPNGNLGKDAYPGVNKNAENTMSAKDMAIVGQKLISAFPEVLETTRLA 230

Query: 216 KFRYRN----RIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              +++      + N N +L  +      + +DG+KTG T  +G   + ++++    ++ 
Sbjct: 231 HLNFKDAGHVTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVQHNGARLIT 290

Query: 266 VVMGMP----TSQERDQKALELITSFLEKK 291
           VVMG      T   R  +  +L+     K 
Sbjct: 291 VVMGARHRDGTDPARFMQTKKLMNFIFTKY 320


>gi|116514484|ref|YP_813390.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|116093799|gb|ABJ58952.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|325126190|gb|ADY85520.1| D-alanyl-d-alanine carboxypeptidase [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 428

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/300 (21%), Positives = 120/300 (40%), Gaps = 36/300 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKT 109
           ++I +D +  Q+   K    PR  AS+TK++T+Y+  + ++  KL   +       ++K 
Sbjct: 48  AAIAVDADSGQILYAKNATTPRQIASMTKLVTVYLTLQAIKQGKLSWTSTAKPTAAIAKI 107

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +     S + L     +T ++   A +  SAN  +    + +SG +  F   M       
Sbjct: 108 SQNTEYSNVPLTSGHAYTIKELYRATLIESANGAALTLAQAVSGDQVTFIKKMRKLLTSW 167

Query: 170 GMQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++    NA GL               D     +A D AI+   L K+FP+  +  SI 
Sbjct: 168 GIKDAKIYNACGLANGSLGSAAYPGVGKDVENEMSATDMAIVCQKLLKDFPEVLQTTSIT 227

Query: 216 KFRYRNRI----ITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              + +      +TN N +L  + +      +DG+KTG T  +G     +++     I+ 
Sbjct: 228 SATFSSGSTQSQMTNWNWMLKGLSSYYSDLPVDGLKTGTTDKAGACFAGTVKKNGHRIIT 287

Query: 266 VVMGMPTSQ----ERDQKALELITSFLEKK---TLKHQQTHRKDNLSSTSLKKSLMIKKL 318
           VV+G   +      R  +  +L+    +     TLK   +    N       K    K +
Sbjct: 288 VVLGAKHANSQDPSRFVQTAKLMHYVYQNYTAVTLKKGSSISGANTVKVPEGKETSSKVV 347


>gi|228939672|ref|ZP_04102254.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228972534|ref|ZP_04133140.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228787171|gb|EEM35144.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820010|gb|EEM66053.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326940266|gb|AEA16162.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 338

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 139/296 (46%), Gaps = 21/296 (7%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
           ++++   L+      ++I++          + AK   S+I+I+ N  ++   K +E P  
Sbjct: 3   FLKKFAILLLSFFITALIVLYFYLYVNGPIIQAK---SAILINANSGEIVYKKNEETPVQ 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            A+L+K+MT YI+ E L  +K+ L+  + +S        S + +      T    + AL+
Sbjct: 60  SATLSKLMTEYIVLEQLNDRKIQLDDFVQISNEVFRVETSPIQVTSNDKTTVRDLLHALL 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG-MQNTIYKNASGLHDKNQI---TTAR 192
               N  + A  E I+G+E  F ILM+ KAK++  +Q + + N++G++        TTA 
Sbjct: 120 LAGNNRSALALAEHIAGTEDNFTILMNKKAKELQLLQPSPFLNSTGINHDTNKQSTTTAI 179

Query: 193 DQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGY 244
           D A L   L K+FP       +    F +++  + N NK++       K+  +DG++T +
Sbjct: 180 DAAKLAARLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSF 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + N  ++ V++ +  D  +++V++          +  +L+    +  +    Q  +
Sbjct: 240 STNGNYSFVSTAKLGDTRLISVILDADEENISFIETKKLLQYGFDPSSYSALQAFK 295


>gi|111115435|ref|YP_710053.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia afzelii PKo]
 gi|216263478|ref|ZP_03435473.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia afzelii ACA-1]
 gi|110890709|gb|ABH01877.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia afzelii PKo]
 gi|215980322|gb|EEC21143.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia afzelii ACA-1]
          Length = 401

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/307 (23%), Positives = 127/307 (41%), Gaps = 30/307 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             S +++D +  ++   K       PASLTK++T+Y      + + + L + +P+S +A 
Sbjct: 40  AKSIVLMDFDTKRVLYSKNPNLVFPPASLTKIVTIYTALIEAEKRNIKLKSIVPISDSAS 99

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
              A  N S ++L++      E+ +  L   S ND S A  EF+ G    F  LM+  A 
Sbjct: 100 YYNAPPNSSLMFLEKGQIVNFEEILKGLSVSSGNDASIAIAEFVVGDLNSFVNLMNINAF 159

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------- 220
            +G+ N  +   SG  ++N   TA D A       + F       S++ F Y        
Sbjct: 160 NLGLFNMHFVEPSGYSNEN-KITALDMAFFAKSYVEKFKFMLNIHSLKYFVYPKSKNLGT 218

Query: 221 -------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP-- 271
                  N    N N L++     DG+KTGY + SG N+V +    +  ++AVV+G+   
Sbjct: 219 TLSSKFLNLKQRNANLLIDDYPYSDGLKTGYIKESGLNLVATALKGERRLIAVVLGVEKG 278

Query: 272 ----TSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTY----S 323
                 + R   A  L      + +        K+ + + ++    +  K    Y     
Sbjct: 279 INRFGEKMRALIAKNLFEYGFNEYSKFPLIVKLKEKVYNGTVDTVALFSKEPFYYVLTKD 338

Query: 324 QFKKIDA 330
           +F KI+ 
Sbjct: 339 EFDKINI 345


>gi|104774384|ref|YP_619364.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|103423465|emb|CAI98355.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
          Length = 428

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/300 (21%), Positives = 120/300 (40%), Gaps = 36/300 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKT 109
           ++I +D +  Q+   K    PR  AS+TK++T+Y+  + ++  KL   +       ++K 
Sbjct: 48  AAIAVDADSGQILYAKNATTPRQIASMTKLVTVYLTLQAIKQGKLSWTSTAKPTAAIAKI 107

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +     S + L     +T ++   A +  SAN  +    + +SG +  F   M       
Sbjct: 108 SQNTEYSNVPLTSGHAYTIKELYRATLIESANGAALTLAQAVSGDQVTFIKKMRKLLTSW 167

Query: 170 GMQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++    NA GL               D     +A D AI+   L K+FP+  +  SI 
Sbjct: 168 GIKDAKIYNACGLANGSLGSAAYPGVGKDVENEMSATDMAIVCQKLLKDFPEVLQTTSIT 227

Query: 216 KFRYRNRI----ITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              + +      +TN N +L  + +      +DG+KTG T  +G     +++     I+ 
Sbjct: 228 SATFSSGSTQSQMTNWNWMLKGLSSYYSDLPVDGLKTGTTDKAGACFAGTVKKNGHRIIT 287

Query: 266 VVMGMPTSQ----ERDQKALELITSFLEKK---TLKHQQTHRKDNLSSTSLKKSLMIKKL 318
           VV+G   +      R  +  +L+    +     TLK   +    N       K    K +
Sbjct: 288 VVLGAKHANSQDPSRFVQTAKLMHYVYQNYTAITLKKGSSISGANTVKVPEGKETSSKVV 347


>gi|229133606|ref|ZP_04262433.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
 gi|228650006|gb|EEL06014.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
          Length = 338

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 137/296 (46%), Gaps = 21/296 (7%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
           ++++   L+   L  ++I++          + AK   S+ +ID N  ++   K +E P  
Sbjct: 3   FLKKITVLLLSFLITALIVLYFYLYVNGPIIQAK---SATLIDTNSGEIVYKKNEETPIQ 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            A+L+K+MT YI  E L   K+ L+  + +S        S + +  K   T    + AL 
Sbjct: 60  SATLSKLMTEYIALEQLNEGKIQLDELVKISNEVFRAETSPIQVTSKDKTTVRDLLHALF 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDKNQI---TTAR 192
               N  + A  E I+G+E  F +LM++KAK++ +   + + NA+G+++       TT+ 
Sbjct: 120 LTGNNRSALALAEHIAGNEDNFTLLMNDKAKQLKLSQPSPFLNATGINNDTNKQSTTTSI 179

Query: 193 DQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGY 244
           D A L   L K+FP       +    F +++  + N NK++       K+  +DG++T +
Sbjct: 180 DVAKLATQLVKDFPDVLNVTKLTSYQFTFKDSKVFNTNKMIYSLNKNIKLQGVDGLQTSF 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + N  ++ V++    D  +++V++          +  +L+    +  +    Q  +
Sbjct: 240 STNGNYSFVSTATRGDTRLISVILDAGDENSTFIETKKLLQYGFDPSSYSALQAFK 295


>gi|229178878|ref|ZP_04306238.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
 gi|228604643|gb|EEK62104.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
          Length = 338

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 141/296 (47%), Gaps = 21/296 (7%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
           ++++   L+      ++I++          + AK   S+I+I+ N  ++   K +E P  
Sbjct: 3   FLKKFAILLLSFFITALIVLYFYLYVNGPIIQAK---SAILINANSGEIVYKKNEETPVQ 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            A+L+K+MT YI+ E L  +K+ L+  + +S        S + +      T    + AL+
Sbjct: 60  SAALSKLMTEYIVLEQLNDRKIQLDDFVQISNEVFRVETSPIQVTSNDKTTVRDLLHALL 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG-MQNTIYKNASGLH---DKNQITTAR 192
               N  + A  E I+G+E  F +LM+ KAK++  +Q + + N++G++   DK   TTA 
Sbjct: 120 LAGNNRSALALAEHIAGNEDNFTVLMNKKAKELKLLQPSPFLNSTGINNDTDKQSTTTAI 179

Query: 193 DQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGY 244
           D A L   L K+FP       +    F +++  + N NK++       K+  +DG++T +
Sbjct: 180 DAAKLAAKLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSF 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + N  ++ V++ +  D  +++V++          +  +L+    +  +    Q  +
Sbjct: 240 STNGNYSFVSTAKLGDTRLISVILDADEENISFIETKKLLQYGFDPSSYSALQAFK 295


>gi|325571073|ref|ZP_08146645.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156158|gb|EGC68344.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus
           casseliflavus ATCC 12755]
          Length = 411

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/275 (23%), Positives = 115/275 (41%), Gaps = 35/275 (12%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
            + AK  YS   ID +  ++   +  E     AS+TK+++LY++ E ++   +  +  +P
Sbjct: 74  SVDAKAAYS---IDFDTGKVLYDQDGETAMGIASITKIISLYLVAEQVEQGTIAWDDPVP 130

Query: 106 VSKTAA----TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
           +S  AA    + N S + L +   +T +    A   +SAN    A  E I+GSE  F   
Sbjct: 131 ISDYAANLSVSPNLSNVPLHQDVTYTVKDLYDASYIQSANAAIVALAELIAGSESAFVDQ 190

Query: 162 MSNKAKKIGMQNTIYKNASGLHD--------------KNQITTARDQAILGILLRKNFPQ 207
           M  K +  G+ +    NASGL++                   +A+D A++   L ++FP 
Sbjct: 191 MQEKVQSWGITDAKIVNASGLNNTYLGDNIYPGSTSTDENELSAKDVALIARHLLQDFPD 250

Query: 208 YYKYFSIRKFRYRNRI-----ITNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             +  S+   ++         + N N +L    N    +DG+KTG T  +G   V +   
Sbjct: 251 VLEVTSLSTKQFGEGSYSPVEMVNWNWMLPGFTNTKDGVDGLKTGTTDMAGACFVGTAVK 310

Query: 259 KDDPIVAVVMG----MPTSQERDQKALELITSFLE 289
               I+ VV+           R  +   L+    +
Sbjct: 311 DGQRIITVVLNVNGHAENPSVRFIETGRLMDYSFD 345


>gi|227530036|ref|ZP_03960085.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus vaginalis
           ATCC 49540]
 gi|227350068|gb|EEJ40359.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus vaginalis
           ATCC 49540]
          Length = 411

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 76/344 (22%), Positives = 150/344 (43%), Gaps = 43/344 (12%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK---PKYSSIVIDVNKNQMTGFKQDEPRYP-AS 79
           +++ I  +  +L +   +++      A       S+I+ID +  Q+   +  E + P AS
Sbjct: 1   MKKVIAFLSTLLLMICCVVARPQTASAAQMIDSRSAIMIDADTGQIIYQQNSEEKLPIAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGILAL 135
           ++K++T+ +I + +   +L  NT++ +SK  A      N S + L+    +T  +   A 
Sbjct: 61  ISKLLTVSVIEDEINHHQLSWNTKVKISKKIAEVSNDSNYSAIGLQAGQSYTVRELFNAT 120

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------------- 182
           + +SA+  + A       + K+F   M  KA++IG+ +    N  GL             
Sbjct: 121 LIKSADGAALALATADGSTIKQFNEKMQKKARQIGITDATIVNPVGLKNGDLKGLKQAGI 180

Query: 183 -HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLLNKMHN 236
            ++     TARD A++   L K++P   K  S  K ++     + + + N NK+L+    
Sbjct: 181 SNNAENSMTARDVALMSQYLVKHYPSVLKVTSQPKAQFTIAKGKTKEVENLNKMLSGGKY 240

Query: 237 ------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM--GMPTSQERDQKALELITSFL 288
                 IDG+KTG +  +G    ++  Y+   ++ VV+         R  +  +L   F+
Sbjct: 241 TVDGVQIDGLKTGTSEAAGACFASTGSYQGHRLITVVLHANGKDKDARFTQTQKLYQYFI 300

Query: 289 EKK-----TLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
           +       TL  +Q+ ++    S   K+ L +     T  Q +K
Sbjct: 301 QNAHQQVLTLNKKQSQKR---VSNGTKRMLTVGPHSFTVWQMQK 341


>gi|326407895|gb|ADZ64966.1| D-alanyl-D-alanine carboxypeptidase [Lactococcus lactis subsp.
           lactis CV56]
          Length = 435

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 72/333 (21%), Positives = 133/333 (39%), Gaps = 38/333 (11%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQ--DEP 74
           + I ++     +S+ ++S  S   A             S+I ID +  ++   +   D  
Sbjct: 2   KKIAIIFCSFLISLSVLSGFSVSAATTPTTNDFTVAAKSAIAIDASSGKILYAQNADDAS 61

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQ 130
              AS+TK++T Y++++ +   KL  NT++P+S  A       N S + L +   +T + 
Sbjct: 62  TRIASITKLLTAYLVYKNVAENKLTWNTKVPISDYAYELTQNSNASNIPLVQNGQYTVKD 121

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN---- 186
            + AL+  SAN  + A  E I+GSE KF  +M+ + K  G+ ++   NASGL + +    
Sbjct: 122 LLNALLLPSANSAAVALAEKIAGSEPKFVDMMTKQMKDWGITDSHLVNASGLPNDDLNGH 181

Query: 187 ----------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NRIITNHNKLL 231
                        +A+  A L   L ++FP+  +     +  +         +TN N++L
Sbjct: 182 IYPGSGASATNTMSAKAVATLSYHLIQDFPEILQITKKTEIPFDTGNEAKMTLTNTNQML 241

Query: 232 NKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           +        +DG+KTG T         +       I+ VV+        +     L    
Sbjct: 242 SGFSTSRTGVDGLKTGSTSFQIDCFAGTTNQNGFRIITVVLEATDPAADNSTPFTLTNQL 301

Query: 288 LEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKR 320
           +       + T       S    K + +   K 
Sbjct: 302 MNYVYGHWRTTSLVQKNKSLDDFKEIAVTDGKE 334


>gi|257876629|ref|ZP_05656282.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus casseliflavus
           EC20]
 gi|257810795|gb|EEV39615.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus casseliflavus
           EC20]
          Length = 444

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 72/303 (23%), Positives = 126/303 (41%), Gaps = 49/303 (16%)

Query: 33  KILFLS--IIMISMASE------------LHAKPKYSSIVIDVNKNQMTGFKQDEP-RYP 77
            ILF +  I ++S A +            + AK  YS   ID +  ++   +  E     
Sbjct: 16  AILFAAVGIPLVSYADDTAMSIEEIQDFSIDAKAAYS---IDFDTGKVLYDQDGETAMGI 72

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGIL 133
           AS+TK+++LY++ E ++   +  +  +P+S  AA    + N S + L +   +T +    
Sbjct: 73  ASITKIISLYLVAEQVEQGTIAWDDPVPISDYAANLSVSPNLSNVPLHQDVTYTVKDLYD 132

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD--------- 184
           A   +SAN    A  E I+GSE  F  LM  K +  G+ +    NASGL++         
Sbjct: 133 ASYIQSANAAIVALAELIAGSESAFVDLMQEKVQSWGITDAKIVNASGLNNAYLGENIYP 192

Query: 185 -----KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL--- 231
                     +A+D A++   L ++FP   +  S+   ++         + N N +L   
Sbjct: 193 GSTSTDENELSAKDVALIARHLLQDFPDVLEVTSLSTKQFGEGSYSPVEMVNWNWMLPGF 252

Query: 232 -NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG----MPTSQERDQKALELITS 286
            N    +DG+KTG T  +G   V +       I+ VV+           R  +   L+  
Sbjct: 253 TNTKDGVDGLKTGTTDMAGACFVGTAVKDGQRIITVVLNVNGHAENPSVRFIETGRLMDY 312

Query: 287 FLE 289
             +
Sbjct: 313 SFD 315


>gi|322381652|ref|ZP_08055618.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154392|gb|EFX46702.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 322

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 61/264 (23%), Positives = 111/264 (42%), Gaps = 30/264 (11%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++ V+D++  +   +K  ++  YPAS TK+++  +  E     K + N  I V       
Sbjct: 66  AAFVMDLDSGETLFYKNENKKMYPASTTKILSALVALE-----KGNPNDVITVGDEVNLK 120

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK-----------FAI 160
           T   S   L +         I  ++  S ND +     +++  +K            FA 
Sbjct: 121 TAGESSAGLVQGQKLKLRDLIAGMMLPSGNDAARTVSRYVANRDKGKNISADEANVYFAG 180

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY- 219
           LM+ KAK+IG   + + N+ GLHD    +T  D A++     KN   +    S   +   
Sbjct: 181 LMNKKAKEIGATKSHFVNSHGLHDPEHYSTVHDMALIAKEAMKN-ELFRNIVSKESYTTA 239

Query: 220 ---RNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
                +   N NKLL +        ++GIKTG+T  +G+ +V+S R     +++VV    
Sbjct: 240 AAKPAQTYVNRNKLLLQDNPVYYSGVNGIKTGFTDEAGYCLVSSARKNGKNLISVVFHSG 299

Query: 272 TSQERDQKALELITSFLEKKTLKH 295
                   + +L+    +K  ++ 
Sbjct: 300 RDNV-WTDSQKLLDYGFDKLMVQK 322


>gi|168180431|ref|ZP_02615095.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum NCTC
           2916]
 gi|182668648|gb|EDT80626.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum NCTC
           2916]
          Length = 378

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 122/271 (45%), Gaps = 16/271 (5%)

Query: 56  SIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +I ID +   +   K  +E    AS TK+MT  +  +Y       L+ +I +S+ A    
Sbjct: 45  AIAIDKDTGIVLFEKSANEIVPIASTTKIMTTLVALKYGD-----LDRKIEISENADKIR 99

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S +  ++    T  + +  L+ RS ND + A  E I+GS + F+ LM+  A +IG+ N+
Sbjct: 100 GSVVGYRKGEKITLRELLYGLMLRSGNDAAIAIAEGIAGSIEGFSKLMNEYASEIGLLNS 159

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS---IRKFRYR-NRIITNHNKL 230
            +    GL      +TA D A L     K +  + K  S   ++K  Y   R   N NK+
Sbjct: 160 HFITPHGLDKDEHYSTAYDLA-LATATAKKYELFNKIVSSKDVKKEEYNFTRDYQNINKI 218

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L K+   DG+KTGYT  +G  +VTS +  D+ I+ VV+          K    + +  + 
Sbjct: 219 LWKIPEADGVKTGYTGKAGKCLVTSSKINDNDIIIVVLNCTPRWNETTKIHNYVKNNYDF 278

Query: 291 KTL-----KHQQTHRKDNLSSTSLKKSLMIK 316
           K +        Q   ++   +    K ++I 
Sbjct: 279 KKICTRGDILDQAVFEEGSVNIIADKDIIIP 309


>gi|324326527|gb|ADY21787.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 338

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 132/291 (45%), Gaps = 26/291 (8%)

Query: 33  KILFLSIIMISM----------ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLT 81
            ILFLS ++ ++             + AK   S+I+ID N +++   K +E P   A+L+
Sbjct: 8   AILFLSFVITTLIVLYFYLYVNGPIIQAK---SAILIDSNSSEVIYKKNEEIPIQSATLS 64

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT YI+ E L   K+ L+  + +S        S +    K   T    + AL     N
Sbjct: 65  KLMTEYIVMEKLNEGKIQLDELVKISNEVFRAETSPIQATSKDKTTVRDLLHALFLTGNN 124

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDKNQI---TTARDQAIL 197
             + A  E I+G+E  F +LM+ KAK++ +   + + NA+G+++       TTA D A L
Sbjct: 125 RSALALAEHIAGNEDNFTLLMNEKAKQLKLSQPSPFLNATGMNNDTNKQSTTTAIDVAKL 184

Query: 198 GILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGYTRNSG 249
              L  +FP       +    F + +  + N NK++       K+  +DG++T +  N  
Sbjct: 185 ATQLVTDFPDVLNITKLTSYQFTFNDSKVFNTNKMIYSLNKNIKLQGVDGLQTSFLINGN 244

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           ++ V + +  D  +++V++          +  +L+    +  +    Q  +
Sbjct: 245 YSFVGTAKRGDTRLISVILDSNEENSTFIETKKLLQYGFDPSSYSALQAFK 295


>gi|15674245|ref|NP_268420.1| D-alanyl-D-alanine carboxypeptidase [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12725334|gb|AAK06361.1|AE006455_7 D-alanyl-D-alanine carboxypeptidase [Lactococcus lactis subsp.
           lactis Il1403]
          Length = 435

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 71/328 (21%), Positives = 132/328 (40%), Gaps = 38/328 (11%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQ--DEP 74
           + I ++     +S+ ++S  S   A             S+I ID +  ++   +   D  
Sbjct: 2   KKIAIIFCSFLISLSVLSDFSVSAATTPTTNDFTVAAKSAIAIDASSGKILYAQNSDDAS 61

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQ 130
              AS+TK++T Y++++ +   KL  NT++P+S  A       N S + L +   +T + 
Sbjct: 62  TRIASITKLLTAYLVYKNVAENKLTWNTKVPISDYAYELTQNSNASNIPLAQNGQYTVKD 121

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN---- 186
            + AL+  SAN  + A  E I+GSE KF  +M+ + K  G+ ++   NASGL + +    
Sbjct: 122 LLNALLLPSANSAAVALAEKIAGSEPKFVDMMTKQMKDWGITDSHLVNASGLPNDDLNGH 181

Query: 187 ----------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NRIITNHNKLL 231
                        +A+  A L   L ++FP+  +     +  +         +TN N++L
Sbjct: 182 IYPGSGASATNTMSAKAVATLSYHLIQDFPEILQITKKTEIPFDTGNEAKMTLTNTNQML 241

Query: 232 NKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           +        +DG+KTG T         +       I+ VV+        +     L    
Sbjct: 242 SGFSTSRTGVDGLKTGSTSFQIDCFAGTTNQNGFRIITVVLEATDPAADNSTPFTLTNQL 301

Query: 288 LEKKTLKHQQTHRKDNLSSTSLKKSLMI 315
           +       + T       S    K + +
Sbjct: 302 MNYVYGHWRTTSLVQKNQSLDDFKEITV 329


>gi|332524065|ref|ZP_08400317.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332315329|gb|EGJ28314.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 424

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 77/346 (22%), Positives = 151/346 (43%), Gaps = 40/346 (11%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYS-----SIVIDVNKNQMTGFKQ-DEPR 75
           I +++ I L   IL    I+  ++  + A    +     +I ++ +  ++   K  D   
Sbjct: 19  IIMKKPIYL---ILICIFILSPLSHPVFADQALNLRAKEAIAVEYSTGKILYQKNSDRKV 75

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQG 131
             ASLTK+MT+Y+  + + S +L  N  + +SK A       + S   L + +Y + ++ 
Sbjct: 76  PIASLTKIMTIYLTLKEINSGRLKWNDSVEMSKYATALANNPDISNPPLYKNSY-SVKEL 134

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------- 184
           + + +  S+N  + A  E I+GSE KF   M N+ +  G+ +    NASGL++       
Sbjct: 135 VDSSMVVSSNSSAIALAEKIAGSEAKFVDKMKNQLETWGITDYQLVNASGLNNSMLNGHI 194

Query: 185 -------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM--- 234
                       +A+  AI+   L K++P+     S  +  + N I+TN N LL      
Sbjct: 195 YPGSSKKSENKLSAKSIAIVSRHLIKDYPEILTISSQNQLYWGNDILTNSNHLLPGNIMG 254

Query: 235 -HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM----PTSQERDQKALELITSFL- 288
              +DG+KTG T  +G   + +       ++ V++        S  R  +A +L      
Sbjct: 255 RKGVDGLKTGTTTKAGQTYIGTAVQDKMRVIVVILNATDASKDSNARFVEANKLFDYSFQ 314

Query: 289 --EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
             +K T+   +      L+ ++ K+  +  K K  ++  + ++ + 
Sbjct: 315 HYQKATIPKGKPFST-KLAISNAKQKTIAFKSKYDFTVIQPVNDQT 359


>gi|295116026|emb|CBL36873.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
           SM4/1]
          Length = 528

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 104/255 (40%), Gaps = 27/255 (10%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---- 111
           IVID +   +   +       PAS+ K++T  ++ E        L+  +  S  A     
Sbjct: 45  IVIDADSGAVLFGQGIHNQSPPASIAKLLTALVVVE-----NSSLDDMVTFSHDAVYNVE 99

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           + + +K  ++E    +    +  L+ +S+N  + A  E ++GS   F  +M+ K  ++G 
Sbjct: 100 SGSGNKKNIEEGDVLSVRDCLYLLLLQSSNQAANALAEHVAGSRDAFVEMMNEKVSELGC 159

Query: 172 -QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR-------YRNRI 223
             +T + N SGL+D  Q  +A D A++      N  Q Y+  S + ++            
Sbjct: 160 VDDTHFANPSGLNDDTQHVSAYDMALIAKAAFDN-QQVYEIASTKSYKLPATINNPNGVT 218

Query: 224 ITNHNKLL--------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
            TN ++L+                 KTGYT  +G  +VT        +++V++    S  
Sbjct: 219 CTNEHRLIITEDETSELYYPAAKAGKTGYTSLAGNTLVTCAEEDGRCLISVILKGQPSPN 278

Query: 276 RDQKALELITSFLEK 290
                  L+    E+
Sbjct: 279 YFLDGKNLLQFGFER 293


>gi|313124231|ref|YP_004034490.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312280794|gb|ADQ61513.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 428

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 65/300 (21%), Positives = 121/300 (40%), Gaps = 36/300 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKT 109
           ++I +D +  Q+   K    PR  AS+TK++T+Y+  + ++  KL   +       ++K 
Sbjct: 48  AAIAVDADSGQILYAKNATTPRQIASMTKLVTVYLTLQAIKQGKLSWTSTAKPTAAIAKI 107

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +     S + L     +T ++   A +  SAN  +    + +SG +  F   M       
Sbjct: 108 SQNTEYSNVPLTSSHAYTIKELYRATLIESANGAAMTLAQAVSGDQVTFVKKMRKLLTSW 167

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++    NA GL + N                 +A D AI+   L K+FP+  +  SI 
Sbjct: 168 GIKDAKIYNACGLANGNLGSAAYPGVGKDVENEMSATDMAIVCQKLLKDFPEVLQTTSIT 227

Query: 216 KFRYRNRI----ITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              + +      +TN N +L  + +      +DG+KTG T  +G     +++     I+ 
Sbjct: 228 SATFSSGSTQSQMTNWNWMLKGLSSYYSDLPVDGLKTGTTDKAGACFAGTVKKNGHRIIT 287

Query: 266 VVMGMPTSQ----ERDQKALELITSFLEKK---TLKHQQTHRKDNLSSTSLKKSLMIKKL 318
           VV+G   +      R  +  +L+    +     TLK   +    N       K    K +
Sbjct: 288 VVLGAKHANSQDPSRFVQTAKLMHYVYQNYTAVTLKKGSSISGANTVKVPEGKETSSKVV 347


>gi|210612733|ref|ZP_03289448.1| hypothetical protein CLONEX_01650 [Clostridium nexile DSM 1787]
 gi|210151426|gb|EEA82434.1| hypothetical protein CLONEX_01650 [Clostridium nexile DSM 1787]
          Length = 324

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 125/298 (41%), Gaps = 26/298 (8%)

Query: 10  AKKTFLTYPYGSIYIQRNI---QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQM 66
           +KK  +   Y +    R +   +L    L +S   +S+     A   +++ +  V++ ++
Sbjct: 26  SKKEKIVTEYETTNYDRYLYEGELFANQLCVSNENVSLNDFEVASSLHAAALFGVDQKKV 85

Query: 67  -TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT--QNPSKLYLKEK 123
                  +  +PAS TK++TLY+  +Y       L+ ++ VSK A +   + S   L+E 
Sbjct: 86  FLSEHMHDRLFPASTTKILTLYLALKYG-----TLSDEVTVSKNAVSVPSDSSVAGLREG 140

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
              T E  +  L+  S ND + A  E ISGS   F  LM+ +A  +G  N+ + N  G H
Sbjct: 141 EQLTLEDLVYGLMLPSGNDSAVAIAEHISGSVDAFVQLMNQEANALGATNSHFVNPHGYH 200

Query: 184 DKNQITTARDQAILGILLRKN--------FPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           DK+  TTA D  ++     +N         P Y           R+      N  +N   
Sbjct: 201 DKDHYTTAYDLYLIFNQGIQNEKFVDIISSPSYTTDIKEPDGSVRSVTWRQSNLFVNGTR 260

Query: 236 ------NIDGIKTGYTRNSGFNIVTSLRYKD-DPIVAVVMGMPTSQERDQKALELITS 286
                  + G KTG T  +G  +V   +     P ++VVMG  +          L+++
Sbjct: 261 TAPENVTVVGGKTGTTDEAGACLVLYEQDSQSRPYISVVMGAESKNALYTTMDSLLST 318


>gi|148379813|ref|YP_001254354.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str.
           ATCC 3502]
 gi|148289297|emb|CAL83393.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str.
           ATCC 3502]
 gi|322806091|emb|CBZ03658.1| penicillin-binding protein DacC [Clostridium botulinum H04402 065]
          Length = 378

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 71/271 (26%), Positives = 120/271 (44%), Gaps = 16/271 (5%)

Query: 56  SIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +I ID +   +   K  +E    AS TK+MT  +  +Y       L+ +I +S+ A    
Sbjct: 45  AIAIDKDTGIVLFEKSANEIVPIASTTKIMTTLVALKYGD-----LDRKIEISENADKIR 99

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S +  ++       + +  L+ RS ND + A  E I+GS + F+ LM+  A +IG+ N+
Sbjct: 100 GSVVGYRKGEKIALRELLYGLMLRSGNDAAIAIAEGIAGSVEGFSKLMNEYASEIGLLNS 159

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS---IRKFRYR-NRIITNHNKL 230
            +    GL      +TA D A L     K +  + K  S   ++K  Y   R   N NK+
Sbjct: 160 HFITPHGLDKDEHYSTAYDLA-LATATAKKYELFNKIVSSKDVKKEEYNFTRDYHNINKI 218

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L K+   DG+KTGYT  +G  +VTS +   + I+ VV+          K    + +  + 
Sbjct: 219 LWKIPEADGVKTGYTGKAGKCLVTSSKINGNDIIIVVLNCTPRWNETTKIHNYVKNNYDF 278

Query: 291 KTL-----KHQQTHRKDNLSSTSLKKSLMIK 316
           K +        Q   ++   +    K ++I 
Sbjct: 279 KKICTRGDILDQAVFEEGSVNIIADKDIIIP 309


>gi|229156148|ref|ZP_04284246.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
 gi|228627331|gb|EEK84060.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
          Length = 338

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 62/296 (20%), Positives = 133/296 (44%), Gaps = 21/296 (7%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
           ++++   L+      ++I++          + AK   S+I+I+ +  ++   K +E P  
Sbjct: 3   FLKKFAILLLSFFITALIVLYFYLYVNGPIIQAK---SAILINAHSGEVVYKKNEETPIQ 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            A+L+K+MT YI  E L    + L+  + +S        S + +  K   T    +  L+
Sbjct: 60  SATLSKLMTEYITLEQLNEGTIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHTLL 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDKNQI---TTAR 192
               N  + A  E I+G+E  F  LM+ KAK++ +   + + NA+G+++       TTA 
Sbjct: 120 LTGNNRSALALAEHIAGNEDNFTQLMNEKAKQLKLSQPSPFLNATGMNNDTNKLSTTTAI 179

Query: 193 DQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGY 244
           + A L   L  +FP       +    F +++  + N NK++       K   +DG++T +
Sbjct: 180 EVAKLATQLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKHQGVDGLQTSF 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + N  ++ V++ +  D  +++V++          +  +L+    +  +    Q  +
Sbjct: 240 STNGNYSFVSTAKRGDTRLISVILDAENENSTFIETKKLLQYGFDPSSYSALQAFK 295


>gi|315652015|ref|ZP_07905016.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saburreum DSM
           3986]
 gi|315485662|gb|EFU76043.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saburreum DSM
           3986]
          Length = 492

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 74/307 (24%), Positives = 135/307 (43%), Gaps = 33/307 (10%)

Query: 26  RNIQLMGKILFLSIIMISM----ASELHAKPK------YSSIVIDVNKNQMTGFKQ-DEP 74
           +N++ +   LFL++I + +    A      P+        +I++D +   +   K   E 
Sbjct: 11  KNLKKITLTLFLALITMFILPLKAFAYVDWPENVNVLSEGAILMDADSGAVIYGKNMHEH 70

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQG 131
            YPAS+TK++T  I+ E       +L+  +  S+ A        S   +      T    
Sbjct: 71  YYPASITKILTALIVVE-----NCNLDDTVTFSRNAVYNVESGSSSAGIDVGDTLTVRDC 125

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + A++ +SAN+ + A  E  +GS   FA +M++KA  +G +++ + N SGL+D    T+A
Sbjct: 126 LYAMLLQSANEAANALAEHTAGSIDAFAKMMNDKAASLGCKDSHFANPSGLNDPEHYTSA 185

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR-------YRNRIITNHNKLLNK-----MHNIDG 239
            D A++     KN P   +  S   +           + + +H+ +L K       N   
Sbjct: 186 YDYALISRAAFKN-PTVTEIDSATYYNLPPTSRVPTGQTLYSHHSMLRKNSGNYYKNAIC 244

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTH 299
            KTGYT  +G  +VT  R     ++ VV+    +   D ++L L   F   K +K + + 
Sbjct: 245 GKTGYTTLAGNTLVTYARTDKIGLITVVLNGNKTHYIDTQSL-LDFGFANFKDIKLKSSS 303

Query: 300 RKDNLSS 306
              +  S
Sbjct: 304 IGTSFKS 310


>gi|256545481|ref|ZP_05472843.1| D-alanyl-D-alanine carboxypeptidase [Anaerococcus vaginalis ATCC
           51170]
 gi|256398877|gb|EEU12492.1| D-alanyl-D-alanine carboxypeptidase [Anaerococcus vaginalis ATCC
           51170]
          Length = 407

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 70/321 (21%), Positives = 146/321 (45%), Gaps = 29/321 (9%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPK----------YSSIVIDVNKNQMTGFKQ 71
           +  ++ I  +   LF+   + + A +  AK             + ++ +     +   K 
Sbjct: 1   MKRKKIIAFLLAFLFIFSPIKTFADDTVAKEGDNIVGADKFVKAYLIGNQESGDIFYQKN 60

Query: 72  DEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP---SKLYLKEKTYFT 127
            +  YP AS++K+MT  +  + ++S K+  +T++  +K A        S + +KE   +T
Sbjct: 61  ADQTYPIASMSKLMTFLLARDAIESGKISFDTKVKGTKEAEDLTGPEYSAMGIKEGEQYT 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL---HD 184
            ++ +  L+  S ND +      ISGSE  FA  M+ KA+++ +++  Y NASG+    D
Sbjct: 121 IKELLTGLMVVSGNDCANLLASTISGSEANFANEMNKKAQELNLKSQKYYNASGINTEDD 180

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIITNHNKLLNKMHNIDGIKT 242
           K   ++A+D   L  ++   +P   +Y  I       ++    +   L +++  +DG+KT
Sbjct: 181 KQNSSSAKDLFELTRIIVDKYPDILEYSKINGIDDDKKDIHKKSTIPLRDEIKGVDGLKT 240

Query: 243 GYTRNSGFNIVTSLR------YKDDPIVAVVMGMPTSQERDQKALELI---TSFLEKKTL 293
           G T  +G  + T++         +   + +VMG   ++ R+    +LI   + +   K L
Sbjct: 241 GTTEEAGHCLTTTIDMNKFDPKNEFRAIGIVMGAEENEFRNSAMTDLIYYVSRYFNYKKL 300

Query: 294 KHQQTHRKDNLSSTSLKKSLM 314
             +     D++   S+K+  +
Sbjct: 301 TDKDLP-SDSIKVNSVKEGYV 320


>gi|240169097|ref|ZP_04747756.1| penicillin-binding protein DacC [Mycobacterium kansasii ATCC 12478]
          Length = 408

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 104/266 (39%), Gaps = 19/266 (7%)

Query: 37  LSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFE 91
           L+   I  A +    P      + +V D++   +   +    R+ PAS+ K+    +   
Sbjct: 77  LAGCGIITAPDTPPVPGDVSAEAWLVADLDSGAVIAARDPHGRHRPASIIKV---LVAMA 133

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            +   +L+LN  +  +   A    +K+ +     +T  Q +  L+  S ND + A    +
Sbjct: 134 AIN--ELNLNKSVAGTDDDAAAEGTKVGVDAGGTYTVNQLLHGLLMHSGNDAAHALARQL 191

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            G +      ++  A K+G ++T     SGL      T+A D  +      +N P +   
Sbjct: 192 GGMQMA-LEKINVLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWRN-PTFADI 249

Query: 212 FSIRKFRYRNRI------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            + R + +          + N N+LL       G KTGYT ++G   V +       ++A
Sbjct: 250 VATRSYDFPGHGDHPGYELENDNQLLYHYPGALGGKTGYTDDAGQTFVGAANRNGRRLMA 309

Query: 266 VVM-GMPTSQERDQKALELITSFLEK 290
           V++ G        ++A  L+      
Sbjct: 310 VLLHGTRQPIAPWEQAAHLLDYGFST 335


>gi|291087663|ref|ZP_06347077.2| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
 gi|291074391|gb|EFE11755.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
          Length = 341

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 64/274 (23%), Positives = 114/274 (41%), Gaps = 30/274 (10%)

Query: 35  LFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIF 90
           LF S + +       A  + ++    + ++    +   K   E  YPAS+TK+MT  +  
Sbjct: 71  LFASALCVVDGETKDAGTELTAEAGALFNITDGTVLYSKNVFEELYPASITKVMTAILAI 130

Query: 91  EYLQSKKLHLNTQIPVSKTAA--TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           E  +     L+ ++ V++ A       S   +K     T EQ +  L+  S ND + A  
Sbjct: 131 EEGE-----LSDEVTVTQDAVITEAGASLAGIKPGDTLTMEQLLYGLMIPSGNDAANAIA 185

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
             +SGS + FA  M+ KA+++G  +T +KN +GL D    TTA D  ++     K  P++
Sbjct: 186 VHMSGSLESFAERMNEKARELGATHTHFKNPNGLTDPEHYTTAYDLYLIFNEALK-LPKF 244

Query: 209 YKYFSIRKFRYRNR-----IITNHNKLLNKMHN----------IDGIKTGYTRNSGFNIV 253
            +      +    R      ++   K+ N   N          + G KTG T+ +G+ ++
Sbjct: 245 REVIGADSYTASYRDADGNTVSKTWKVGNWYQNGEEKAPQGVTVLGGKTGTTQAAGYCLI 304

Query: 254 TSLRYK--DDPIVAVVMGMPTSQERDQKALELIT 285
                       ++VV+     Q        +IT
Sbjct: 305 M-AERDESGREYISVVLKAENRQGLYDNMTNIIT 337


>gi|116513223|ref|YP_812130.1| D,D-carboxypeptidase PBP3 [Lactococcus lactis subsp. cremoris SK11]
 gi|116108877|gb|ABJ74017.1| D,D-carboxypeptidase PBP3, Serine peptidase, MEROPS family S11
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 434

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 70/332 (21%), Positives = 133/332 (40%), Gaps = 37/332 (11%)

Query: 26  RNIQLMGKILFLSIIMIS--------MASELHAKPKYSSIVIDVNKNQMTGFKQ--DEPR 75
           + I ++   L +S+ ++S          +        S+I ID +  ++   +   D   
Sbjct: 2   KKIAIIFCTLLMSLSVLSGFAVSADTTTTNNFTVAAKSAIAIDASSGKILYAQNADDAST 61

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQG 131
             AS+TK++T Y++++ +   KL   T++P+S  A       N S + L +   +T +  
Sbjct: 62  RIASITKLLTAYLVYKNVAENKLTWTTKVPISDYAYELTQNSNASNIPLAQNGQYTVKDL 121

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN----- 186
           + AL+  SAN  + A  E I+GSE KF  +M+ + K  G+ ++   NASGL + +     
Sbjct: 122 LNALLLPSANSAAVALAEKIAGSEPKFVDMMTAQMKDWGITDSHLVNASGLPNDDLNGHI 181

Query: 187 ---------QITTARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLLN 232
                       +A+  A L   L ++FP+  +     +  +         +TN N++L+
Sbjct: 182 YPGSGASATNTMSAKAVATLSYHLIQDFPEVLQITKKTEIPFDTGNEEKMTLTNTNQMLS 241

Query: 233 KMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
                   +DG+KTG T         +       I+ VV+        +     L    +
Sbjct: 242 GFSTSRTGVDGLKTGSTSFQIDCFAGTTNQNGFRIITVVLEATDPAADNSTPFTLTNQLM 301

Query: 289 EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKR 320
                  + T+      S    K + +   K 
Sbjct: 302 NYVYGHWRTTNLVQKNQSLDDFKEIAVTDGKE 333


>gi|291087522|ref|ZP_06571984.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
 gi|291074901|gb|EFE12265.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
          Length = 489

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 104/255 (40%), Gaps = 27/255 (10%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---- 111
           IVID +   +   +       PAS+ K++T  ++ E        L+  +  S  A     
Sbjct: 6   IVIDADSGAVLFGQGIHNQSPPASIAKLLTALVVVE-----NSSLDDMVTFSHDAVYNVE 60

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           + + +K  ++E    +    +  L+ +S+N  + A  E ++GS   F  +M+ K  ++G 
Sbjct: 61  SGSGNKKNIEEGDVLSVRDCLYLLLLQSSNQAANALAEHVAGSRDAFVEMMNEKVSELGC 120

Query: 172 -QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR-------YRNRI 223
             +T + N SGL+D  Q  +A D A++      N  Q Y+  S + ++            
Sbjct: 121 VDDTHFANPSGLNDDTQHVSAYDMALIAKAAFDN-QQVYEIASTKSYKLPATINNPNGVT 179

Query: 224 ITNHNKLL--------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
            TN ++L+                 KTGYT  +G  +VT        +++V++    S  
Sbjct: 180 CTNEHRLIITEDETSELYYPAAKAGKTGYTSLAGNTLVTCAEEDGRCLISVILKGQPSPN 239

Query: 276 RDQKALELITSFLEK 290
                  L+    E+
Sbjct: 240 YFLDGKNLLQFGFER 254


>gi|167461903|ref|ZP_02326992.1| D-alanyl-D-alanine carboxypeptidase [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 317

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 61/264 (23%), Positives = 111/264 (42%), Gaps = 30/264 (11%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--A 111
           ++ V+D++  +   +K  ++  YPAS TK+++  +  E     K + N  I V       
Sbjct: 61  AAFVMDLDSGETLFYKNENKKMYPASTTKILSALVALE-----KGNPNDVITVGDEVNLK 115

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK-----------FAI 160
           T   S   L +         I  ++  S ND +     +++  +K            FA 
Sbjct: 116 TAGESSAGLVQGQKLKLRDLIAGMMLPSGNDAARTVSRYVANRDKGKNISADEANVYFAG 175

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY- 219
           LM+ KAK+IG   + + N+ GLHD    +T  D A++     KN   +    S   +   
Sbjct: 176 LMNKKAKEIGATKSHFVNSHGLHDPEHYSTVHDMALIAKEAMKN-ELFRNIVSKESYTTA 234

Query: 220 ---RNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
                +   N NKLL +        ++GIKTG+T  +G+ +V+S R     +++VV    
Sbjct: 235 AAKPAQTYVNRNKLLLQDNPVYYSGVNGIKTGFTDEAGYCLVSSARKNGKNLISVVFHSG 294

Query: 272 TSQERDQKALELITSFLEKKTLKH 295
                   + +L+    +K  ++ 
Sbjct: 295 RDNV-WTDSQKLLDYGFDKLMVQK 317


>gi|222152530|ref|YP_002561705.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus uberis 0140J]
 gi|222113341|emb|CAR40940.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus uberis
           0140J]
          Length = 400

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 72/339 (21%), Positives = 145/339 (42%), Gaps = 32/339 (9%)

Query: 24  IQRNI--QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASL 80
           +++ I   ++  +   +   + +A E        +I ++    ++   K+   + P ASL
Sbjct: 1   MKKTILSTIIVGLFLWTPSTLVLAQEKLVINAKQAIAVECETGKILYQKEANQKAPIASL 60

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALIT 137
           TK++T+Y+  + +++ K+  +T + +S  A   A           K  FT ++ I + + 
Sbjct: 61  TKILTVYLTLKEIKNGKISWDTPVKMSDYAKELANNPDVSNPSLYKDTFTVKELIDSSMV 120

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------H 183
            S+N  + +  E I+GSE +F  +M  + +  G+Q+    NASGL               
Sbjct: 121 VSSNSAAISLAETIAGSEPQFVDMMKKQLQTWGIQDYQLVNASGLNNSMLNGHLYPKSKP 180

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDG 239
           +     +A++ AI+   L   FP+     S  +  + N ++ N N LL  +      +DG
Sbjct: 181 NDENQLSAKNLAIVASHLISEFPEILAISSQSQLYWGNDVLQNSNHLLPGLSMGRLGVDG 240

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT----SQERDQKALELIT-SFLEKKTL- 293
           +KTG T  +G   + +    +  ++ V++        S+ R  +A +L   +F   +++ 
Sbjct: 241 LKTGTTGCAGQTYIGTAVQDNMRVIVVILHANNAEQDSEARFVEANKLFDFAFQNFQSIT 300

Query: 294 --KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
             K +    K  +     KK   I     T  Q K  D+
Sbjct: 301 IPKAKPYATKLAIIDGKKKKVAFISHKDFTIVQPKNDDS 339


>gi|52142940|ref|YP_083889.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
 gi|51976409|gb|AAU17959.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
          Length = 338

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 130/284 (45%), Gaps = 16/284 (5%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYI 88
            +  ++ L   +      + AK   S+I+I+ +  ++   K +E P   A+L+K+MT YI
Sbjct: 15  FITALIVLYFYLYVNGPIIQAK---SAILINAHSGEVVYKKNEETPIQSATLSKLMTEYI 71

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
             E L    + L+  + +S        S + +  K   T    +  L+    N  + A  
Sbjct: 72  TLEQLNEGTIQLDEVVKISNEVFRAETSPIQVISKDKTTVRDLLHTLLLTGNNRSALALA 131

Query: 149 EFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDKNQI---TTARDQAILGILLRKN 204
           E I+G+E KF  LM+ KAK++ +   + + NA+G+++       TTA + A L   L  +
Sbjct: 132 EHIAGNEDKFTQLMNEKAKQLKLSQLSPFLNATGMNNDTNKLSTTTAIEVAKLATQLVTD 191

Query: 205 FPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGYTRNSGFNIVTSL 256
           FP       +    F +++  + N NK++       K+  +DG++T ++ NS ++ V++ 
Sbjct: 192 FPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKLQGVDGLQTSFSTNSNYSFVSTA 251

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           +  D  +++V++          +  +L+    +  +    Q  +
Sbjct: 252 KRGDTRLISVILDADNENSTFIETKKLLQYGFDPSSYSALQAFK 295


>gi|195978796|ref|YP_002124040.1| D-alanyl-D-alanine carboxypeptidase precursor DacA.1 [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|195975501|gb|ACG63027.1| D-alanyl-D-alanine carboxypeptidase precursor DacA.1 [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
          Length = 428

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 152/347 (43%), Gaps = 37/347 (10%)

Query: 25  QRNIQLMGKILFLSIIMIS-MASELHAK----PKYSSIVIDVNKNQMTGFKQ-DEPRYPA 78
           +R IQ+   ++ L+I+ IS +A    A         +I ++++  ++   K  D+    A
Sbjct: 12  RRIIQMKKVLIALTILAISCLAYPAQADHYDISAKHAIAVELDSGKILYEKDADKTVSVA 71

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILA 134
           SL+K++T Y++++ +Q+ KL  ++ + +S            S + L  +  +T ++ + A
Sbjct: 72  SLSKVLTAYLVYKEVQAGKLKWDSSVTISNYPYELTTNYTISNVPLDAR-KYTVKELLKA 130

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------- 183
           LI  +AN  + A  E I G+E KF   M  + K  G+      NASGL            
Sbjct: 131 LIVTNANSPAIALAEKIGGTEAKFVDKMIAQLKDWGITGAKVVNASGLPNHILGEHIYPG 190

Query: 184 ---DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----N 236
              D +   +A D A++   L K FP+  K  S  +  + ++ I ++N +L  M      
Sbjct: 191 SSLDDDNQFSAADLALVTSHLLKEFPEVLKLSSQVQAEFNHQQIFSYNYMLKGMPNYRDG 250

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE--------LITSFL 288
           +DG+   Y+   G + + +    +  I+ VV+    +Q+ D             ++T F 
Sbjct: 251 VDGLFVSYSEKGGSSFLATSVENNMRIITVVLNADHAQDNDTAVFTATNQLLQYVLTHFK 310

Query: 289 EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           +   L+  +  +   L      +  +    K+  +  K +D K+ +T
Sbjct: 311 KVVVLEKGKPDQLKALPVLDSPQKKVQLVPKKKLTMIKALDDKSKTT 357


>gi|94993641|ref|YP_601739.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS10750]
 gi|94547149|gb|ABF37195.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS10750]
          Length = 410

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 67/307 (21%), Positives = 132/307 (42%), Gaps = 26/307 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R I L+   LF +   +S   E ++     +I + +   ++   K  +   P AS++K
Sbjct: 2   IKRLISLVVIALFFAASTVS--GEEYSVTAKHAIAVALESGKVLYEKDAKEVVPVASVSK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ +   KL+ ++ + +S            S + L +K  +T ++ + AL+  
Sbjct: 60  LLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPL-DKRKYTVKELLSALVVN 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           +AN  + A  E I G+E KF   M  + ++ G+ +    N++GL               D
Sbjct: 119 NANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
                 A D AI+   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIFAGQTIYSYNYMLKGMPCYREGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
             GY++ +G + V +       ++ VV+    S E D    +     L+   +  Q+   
Sbjct: 239 FVGYSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQL 298

Query: 301 KDNLSST 307
            +N    
Sbjct: 299 IENNKPV 305


>gi|325663285|ref|ZP_08151735.1| hypothetical protein HMPREF0490_02476 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470739|gb|EGC73969.1| hypothetical protein HMPREF0490_02476 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 547

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 60/297 (20%), Positives = 124/297 (41%), Gaps = 28/297 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S I++D+N   +   K  DE  +PAS+TK+MT  +  E  +     L  ++  ++ + 
Sbjct: 118 AESGIIMDMNSGAILYAKNIDEKEFPASITKIMTALVALENSE-----LTDKVHFTEESV 172

Query: 112 T---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                  + + ++     T E  +  ++  SAN+VS A  + +      F  +M+ KA++
Sbjct: 173 AFLEYGDASIGMQPGEEITMEDALYGMLLASANEVSYAIADTVGNGYDNFIRMMNEKAEE 232

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN-- 226
           +G  NT + N  GLHD+    +ARD A++     +   ++ K  +  + R     + N  
Sbjct: 233 LGCTNTHFTNPHGLHDEEHYVSARDMALIAAAAFQ-HEEFRKITNTYEHRIPPTNLVNEE 291

Query: 227 -----HNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE- 275
                ++++L            G KTGYT  +   +V+ L   +  +V+V +        
Sbjct: 292 RVFQQYHQMLYDGTDTFYEPCVGGKTGYTDQALSTLVSYLDNGELQLVSVNLKTHGVHVY 351

Query: 276 -RDQKALELITSFLEKKTLKHQQTHRK----DNLSSTSLKKSLMIKKLKRTYSQFKK 327
              +   E + +  +K  L+ +   +     +  +     K++  + +K       K
Sbjct: 352 PDTKNMAEYVFNNFKKIPLEGKDLPKGVKETEEDAYIVAPKNVEFQDVKAEIVPEDK 408


>gi|111023206|ref|YP_706178.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus jostii RHA1]
 gi|110822736|gb|ABG98020.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus jostii RHA1]
          Length = 431

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 58/317 (18%), Positives = 111/317 (35%), Gaps = 27/317 (8%)

Query: 37  LSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
             +I+   A  L A       +V D++   +   K    RY PAS  KM+   +      
Sbjct: 89  CGVILPDDAPALPADIAASGWVVADIDTGDVLAAKDPHGRYRPASTIKMLLALVAL---- 144

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
             +L L+  +  +   A    S + + +   +T  Q +  L+  S ND +      + G 
Sbjct: 145 -SELDLDKTVTATAEDAAVEGSAVGIGKNGQYTNRQLMQGLVMASGNDAAHLLARQLGG- 202

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           +      M++ A  +G  +T     SGL      ++  D A++     KN P + +  S 
Sbjct: 203 DAATVDKMNHLADTLGAHDTRTATPSGLDGPGMSSSPFDLALIFHTAMKN-PTFAELIST 261

Query: 215 RKFRYRNRI---------------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
              ++                   + N N+LL       G KTG+T ++    V    + 
Sbjct: 262 ETVQFPGFPKDPAIPDDQDRPPFALANDNQLLYNYDGALGGKTGFTDDARHTYVGGADHD 321

Query: 260 DDPIVAVVMGMPTSQER-DQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKL 318
              ++  +MG      R  ++A  L+         +  Q    ++L  T    + ++   
Sbjct: 322 GRRLMVTLMGAEAQPIRPWEQAARLLDYGFALD--RDAQVGSLEDLYPTESDSAAVLAAP 379

Query: 319 KRTYSQFKKIDAKAHST 335
            +  S        A  +
Sbjct: 380 PQQDSAAATSSVVASGS 396


>gi|325685760|gb|EGD27835.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 428

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 65/300 (21%), Positives = 120/300 (40%), Gaps = 36/300 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQ----IPVSKT 109
           ++I +D +  Q+   K    PR  AS+TK++T+Y+  + ++  KL   +       ++K 
Sbjct: 48  AAIAVDADSGQILYAKNATTPRQIASMTKLVTVYLTLQAIKQGKLSWTSTSKPTAAIAKI 107

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +     S + L     +T +    A +  SAN  +    + +SG +  F   M       
Sbjct: 108 SQNTEYSNVPLTSSRAYTIKDLYRATLIESANGAAMTLAQAVSGDQVTFVKKMRKLLTSW 167

Query: 170 GMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+++    NA GL + N                 +A D AI+   L K+FP+  +  SI 
Sbjct: 168 GIKDAKIYNACGLANGNLGSAAYPGVGKDVENEMSATDMAIVCQKLLKDFPEVLQTTSIT 227

Query: 216 KFRYRNRI----ITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              + +      +TN N +L  + +      +DG+KTG T  +G     +++     I+ 
Sbjct: 228 SATFSSGSTQSQMTNWNWMLKGLSSYYSDLPVDGLKTGTTDKAGACFAGTVKKNGHRIIT 287

Query: 266 VVMGMPTSQ----ERDQKALELITSFLEKK---TLKHQQTHRKDNLSSTSLKKSLMIKKL 318
           VV+G   +      R  +  +L+    +     TLK   +    N       K    K +
Sbjct: 288 VVLGAKHANSQDPSRFVQTAKLMHYVYQNYTAVTLKKGSSISGANTVKVPEGKETSSKVV 347


>gi|257784553|ref|YP_003179770.1| Serine-type D-Ala-D-Ala carboxypeptidase [Atopobium parvulum DSM
           20469]
 gi|257473060|gb|ACV51179.1| Serine-type D-Ala-D-Ala carboxypeptidase [Atopobium parvulum DSM
           20469]
          Length = 407

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 108/253 (42%), Gaps = 9/253 (3%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           S+  E       ++IV D   N +     D+    AS+TK+MT  +  +      ++L+ 
Sbjct: 52  SVTDEPKLTEATTAIVTDSQGNVLWSKNPDQELPMASITKVMTAIVALDSG----VNLDE 107

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
              ++     +      L      T  Q I+ ++  SAND +      +SGS++ FA  M
Sbjct: 108 PCKITVPDLEEGSQVAGLTSDDTPTLRQLIMMMLVYSANDAAYNIAINVSGSQQAFADQM 167

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-- 220
           + KA +IGM +T ++N  GL      +TARD A++G   R+++P        R +     
Sbjct: 168 NKKAAEIGMTHTQFQNPHGLDADGHYSTARDLALMGRYAREHYPLIASAVHTRSYTTTVG 227

Query: 221 --NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
              R   + + L++    + GIKTG   +SG   + + +  +  +   V+G  T Q R  
Sbjct: 228 GEQRTFHSTDDLMDTYRGLLGIKTG-AEDSGTAFLGASKRGNITLYTCVLGCETIQGRFD 286

Query: 279 KALELITSFLEKK 291
               L+       
Sbjct: 287 DTAILMNWAYRNY 299


>gi|310779537|ref|YP_003967870.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ilyobacter
           polytropus DSM 2926]
 gi|309748860|gb|ADO83522.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ilyobacter
           polytropus DSM 2926]
          Length = 368

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 66/271 (24%), Positives = 135/271 (49%), Gaps = 14/271 (5%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVI-DVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEY 92
           +FLS+I+            Y+S+++ D ++N +   +    ++P AS+TKMMT+ +++++
Sbjct: 7   IFLSVILFLTTFS---NEDYTSLLVGDKDEN-IYYSENLHEKHPLASVTKMMTVMVVYDH 62

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           +++K + L  ++ +S  A +   S +++ + +  T    + A    SAN+ + A  E+I 
Sbjct: 63  IRNKDISLEDRVEISPEARSVGGSMIWIAQGSKLTVRDLLKATAIYSANNAAYALAEYIG 122

Query: 153 -GSEKKFAILMSNKAKKIGMQNTI-YKNASGLHDKNQITTARDQAILGILLRK----NFP 206
            G    F  LM+ KA+ +G+ + + +    GL              LGI         +P
Sbjct: 123 KGDVDFFVQLMNQKAEDLGLGDEVEFYTPMGLPPSMTGKPMDRGTALGIYKLSLEALKYP 182

Query: 207 QYYKYFSIRK--FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           +Y    S+++   +   + I N NKLL+K + + GIKTG+   +G+NI  + +  +   +
Sbjct: 183 EYITIASLKEDFIQDGTQRIVNRNKLLSKENGVFGIKTGHHSKAGYNISIAAKRDEVTTI 242

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKTLKH 295
            +V G P  + RD+   + +  F ++  L+ 
Sbjct: 243 TIVFGSPKEEIRDKTVADSLDKFYDEYHLEK 273


>gi|325911591|ref|ZP_08173999.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners UPII
           143-D]
 gi|325476577|gb|EGC79735.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners UPII
           143-D]
          Length = 425

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 73/338 (21%), Positives = 136/338 (40%), Gaps = 41/338 (12%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKL 98
           I  + A +  A    ++I+ D+   Q+   K  + + P AS++K++T+Y+  + +++ KL
Sbjct: 49  ICDNYAQDNLALNAKAAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAIKAGKL 108

Query: 99  HLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
              T++  S+ A         S + L+    +T  Q   A + +SAN  +      ++GS
Sbjct: 109 SWQTKVMPSREAIAVSKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGS 168

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAILGIL 200
            KKF  +M  +     +        SGL               D     +A D  IL   
Sbjct: 169 SKKFVGMMRKQLLDWHISQAQIVTPSGLPNFTLGRDADSNKNADAENELSASDMGILIKH 228

Query: 201 LRKNFPQYYKYFSIRKFRY----RNRIITNHNKLL------NKMHNIDGIKTGYTRNSGF 250
           L   FPQ  +   I K  +    +   + N N +L      N+ + +DG+KTG T  +G 
Sbjct: 229 LLLEFPQVLETTRIAKLDFLDGRKTFKMVNWNLMLKGLSQYNETYPVDGLKTGTTDAAGA 288

Query: 251 NIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTL--------KHQQT 298
            + ++L      IV V++G          R  +  +L   F    +L           +T
Sbjct: 289 CLASTLVKNGRRIVTVIIGARHLNGNDPARFVETKKLYAYFYNNYSLHIYKRWTQFPGKT 348

Query: 299 HRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
             K   S  +  ++ + +      S+ +K+DA+    +
Sbjct: 349 LIKVKNSPINEVRACLYQDTGIWISKGQKLDAELSMNK 386


>gi|89097521|ref|ZP_01170410.1| hypothetical protein B14911_28020 [Bacillus sp. NRRL B-14911]
 gi|89087817|gb|EAR66929.1| hypothetical protein B14911_28020 [Bacillus sp. NRRL B-14911]
          Length = 387

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 72/319 (22%), Positives = 132/319 (41%), Gaps = 24/319 (7%)

Query: 29  QLMGKILFLSIIMISMASEL--HAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMT 85
            LM  +L +     ++A E    A    ++++ID   N +   K   +  YPASLTK+ T
Sbjct: 7   ALMVFMLTVHAGQSAVAKEEKEPAIVSEAAVLIDSQSNAILYSKNGSDRMYPASLTKIAT 66

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
                     KK +L+  + VS++A     +K+YL+E    T    I  ++  S ND + 
Sbjct: 67  AIYAI-----KKGNLDDMVTVSRSAVETEGTKVYLEEGEKTTLRHLIEGMLINSGNDAAA 121

Query: 146 AFGEFISGSEKKFAILMSNKA-KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
           A  E I G+ +++   ++    K++ + NT + N  GL D+   TTA D A++     KN
Sbjct: 122 AIAEHIDGNIEEYERNLNTFLEKEVHVHNTHFTNPHGLFDERHYTTAEDMALITSYALKN 181

Query: 205 FPQYYKYFSIRKFRY----RNRIITNHNKLLNK---MHNIDGIKTGYTRNSGFNIVTSLR 257
              +   +  ++  +     +  I  H+++L        I G KTG+   S   + TS  
Sbjct: 182 -NTFRTIYGTKELAWDGESWDTTIFTHHRMLKGEVPYTGITGGKTGFVNESKQTLATSAE 240

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLEK---KTLKHQQTHRKDNLSSTSLKKSLM 314
                + A+VM     ++       L      +     +  + + +K +    S K   +
Sbjct: 241 NGKIQLTAIVMKADFKRDIYNDTKTLFDYGFSRFKSSVISKETSFQKGDQIYFSGKDRFV 300

Query: 315 IKKLKRTYSQFKKIDAKAH 333
                   + F+KI  +  
Sbjct: 301 T----LPLNHFEKIVTEEG 315


>gi|257890484|ref|ZP_05670137.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
           1,231,410]
 gi|260558933|ref|ZP_05831120.1| predicted protein [Enterococcus faecium C68]
 gi|293559772|ref|ZP_06676292.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1162]
 gi|314950187|ref|ZP_07853472.1| beta-lactamase [Enterococcus faecium TX0082]
 gi|257826844|gb|EEV53470.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
           1,231,410]
 gi|260075041|gb|EEW63356.1| predicted protein [Enterococcus faecium C68]
 gi|291606255|gb|EFF35669.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1162]
 gi|313643497|gb|EFS08077.1| beta-lactamase [Enterococcus faecium TX0082]
          Length = 435

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 127/311 (40%), Gaps = 35/311 (11%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQ 94
           FL  + +  A +       ++  +D    ++   +  E     AS+TK++ LYI+ + ++
Sbjct: 22  FLPAVAV-QAEDTFKVNAKAAFAVDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQVK 80

Query: 95  SKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             KL  + ++ +S  A     T + S + L ++  +T ++   + I +SAN    A  E 
Sbjct: 81  EGKLSWDDKVSISDYAENLSVTPDLSNVPLHKENTYTVKELFDSAIIQSANASMVALAEK 140

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAI 196
           ISGSE KF   M  + K  G+++    NASGL+              +     +A+D AI
Sbjct: 141 ISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVAI 200

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIIT-----NHNKLLNKM----HNIDGIKTGYTRN 247
           +   L  +FP+     S     +     +     N N +L         +DG+KTG T  
Sbjct: 201 VARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTEL 260

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTLKH--QQTHRK 301
           +G   V ++   D  I+ VV+           R  +   L+    +  + K   +     
Sbjct: 261 AGACFVGTITKNDQRIITVVLNADGHAENPSARFNETARLMDYCYDNWSEKELGKANASI 320

Query: 302 DNLSSTSLKKS 312
            +L +  +K  
Sbjct: 321 PSLKTIDVKDG 331


>gi|293568621|ref|ZP_06679936.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1071]
 gi|291588581|gb|EFF20414.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1071]
          Length = 435

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 127/311 (40%), Gaps = 35/311 (11%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQ 94
           FL  + +  A +       ++  +D    ++   +  E     AS+TK++ LYI+ + ++
Sbjct: 22  FLPAVAV-QAEDTFKVNAKAAFAVDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQVK 80

Query: 95  SKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             KL  + ++ +S  A     T + S + L ++  +T ++   + I +SAN    A  E 
Sbjct: 81  EGKLSWDDKVSISDYAENLSVTPDLSNVPLHKENTYTVKELFDSAIIQSANASMVALAEK 140

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAI 196
           ISGSE KF   M  + K  G+++    NASGL+              +     +A+D AI
Sbjct: 141 ISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVAI 200

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIIT-----NHNKLLNKM----HNIDGIKTGYTRN 247
           +   L  +FP+     S     +     +     N N +L         +DG+KTG T  
Sbjct: 201 VARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTEL 260

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTLKH--QQTHRK 301
           +G   V ++   D  I+ VV+           R  +   L+    +  + K   +     
Sbjct: 261 AGACFVGTITKNDQRIITVVLNADGHAENPSARFNETARLMDYCYDNWSEKELGKANASI 320

Query: 302 DNLSSTSLKKS 312
            +L +  +K  
Sbjct: 321 PSLKTIDVKDG 331


>gi|226365711|ref|YP_002783494.1| D-alanyl-D-alanine carboxypeptidase [Rhodococcus opacus B4]
 gi|226244201|dbj|BAH54549.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus opacus
           B4]
          Length = 426

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 55/317 (17%), Positives = 107/317 (33%), Gaps = 27/317 (8%)

Query: 37  LSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
             + +   A  L A       +V D++   +   K    RY PAS  KM+   +  + L 
Sbjct: 84  CGVALPDGAPALPADIAASGWVVADIDSGDVLAAKDPHGRYRPASTIKMLLALVALDELD 143

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
                L+  +  +   A    S + + +   +T  Q +  L+  S ND +      + G 
Sbjct: 144 -----LDKTVTATAEDAAVEGSAVGIGKNGQYTNRQLMQGLVMASGNDAAHLLARQLGG- 197

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           +      M+  A  +G  +T     SGL      ++  D A++     KN P + +  S 
Sbjct: 198 DAATVEKMNRLADTLGAHDTRTATPSGLDGPGMSSSPFDLALIFHNAMKN-PTFAELIST 256

Query: 215 RKFRYRNRI---------------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
              ++                   + N N+LL       G KTG+T ++    V    + 
Sbjct: 257 ETVQFPGFPKDPAIPEDQDRPPFALANDNQLLYNYPGALGGKTGFTDDARHTYVGGADHD 316

Query: 260 DDPIVAVVMGMPTSQER-DQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKL 318
              ++  +MG      R  ++A  L+         +  +    ++L         ++   
Sbjct: 317 GRRLMVTLMGAEAQPIRPWEQAARLLDYGFALD--RDSRVGSLEDLYPAEDGSDAVLAAP 374

Query: 319 KRTYSQFKKIDAKAHST 335
            +  S        A  +
Sbjct: 375 PQQDSAAATSSVVASGS 391


>gi|309810092|ref|ZP_07703938.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners SPIN
           2503V10-D]
 gi|308169591|gb|EFO71638.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners SPIN
           2503V10-D]
          Length = 425

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 73/338 (21%), Positives = 134/338 (39%), Gaps = 41/338 (12%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKL 98
           I  + A +  A    ++I+ D+   Q+   K  + + P AS++K++T+Y+  + +++ KL
Sbjct: 49  ICDNYAQDNLALNAKAAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAIKAGKL 108

Query: 99  HLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
              T++  S+ A         S + L+    +T  Q   A + +SAN  +      ++GS
Sbjct: 109 SWQTKVMPSREAIAVSKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGS 168

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAILGIL 200
            KKF  +M  +     +        SGL               D     +A D  IL   
Sbjct: 169 SKKFVGMMRKQLLDWHISQAQIVTPSGLPNFTLGRDADSNKNADAENELSAGDMGILIKH 228

Query: 201 LRKNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKM------HNIDGIKTGYTRNSGF 250
           L   FPQ      I K  +        + N N +L  +      + +DG+KTG T  +G 
Sbjct: 229 LLLEFPQVLDTTRISKLNFPDGRNTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGA 288

Query: 251 NIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTL--------KHQQT 298
            + ++L      IV V++G          R  +  +L   F    +L           +T
Sbjct: 289 CLASTLVKNGRRIVTVIIGARHLNGNDPARFVETKKLYAYFYNNYSLHIYKRWTQFPGKT 348

Query: 299 HRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
             K   SS +  ++ + +      S+ +K+DA+    +
Sbjct: 349 LIKVKSSSINEVRACLYQDTGIWISKGQKLDAELSMNK 386


>gi|238923987|ref|YP_002937503.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium rectale ATCC
           33656]
 gi|238875662|gb|ACR75369.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium rectale ATCC
           33656]
          Length = 384

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 102/250 (40%), Gaps = 20/250 (8%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+ + D +       +   +    AS TK++T  +  E     K  +N  + +S+ AA
Sbjct: 83  AVSAALYDADDETFIYGRNMRDSMANASTTKLLTCIVALE-----KSDINDTVTISQNAA 137

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +Q   KL L     +  +  +  ++  S ND + A  E + GS + FA LM+ KA +IG 
Sbjct: 138 SQPAVKLGLVAGNSYNMKDLLYGMMLESFNDCAYAIAEHVGGSTEGFAKLMNEKANEIGC 197

Query: 172 QNTIYKNASGLHDKN----QITTARDQAILGILLRKNFP---QYYKYFSIRKFRY----R 220
             T +   +GL  +N      +TA D  ++        P   Q+ +     ++ +     
Sbjct: 198 LGTYFITPNGLDAENDISFHHSTAGDLCVIMSYCAWKSPKSTQFLEITQTMQYTFETEEG 257

Query: 221 NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM---PTSQERD 277
             +  NHN+LL +       KTG+T  +G+  V ++      +   ++G         + 
Sbjct: 258 KMVFNNHNRLLTETDYCISGKTGFTAKAGYCYVAAVEKDGRRMCLSLLGCGWPNNKNYKW 317

Query: 278 QKALELITSF 287
             A  L+   
Sbjct: 318 ADAKSLVEYA 327


>gi|228908280|ref|ZP_04072125.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           200]
 gi|228851321|gb|EEM96130.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           200]
          Length = 338

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 139/296 (46%), Gaps = 21/296 (7%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
           ++++   L+      ++I++          + AK   S+I+I+ N  ++   K +E P  
Sbjct: 3   FLKKFAILLLSFFITALIVLYFYLYVNGPIIQAK---SAILINANSGEIVYKKDEETPVQ 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            A+L+K+MT YI+ E L  +K+ L+  + +S        S + +      T    + AL+
Sbjct: 60  SAALSKLMTEYIVLEQLNDRKIQLDDFVQISNEVFRVETSPIQVTSNDKTTVRDLLHALL 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG-MQNTIYKNASGLHDKNQI---TTAR 192
               N  + A  E I+G+E  F +LM+ KAK++  +Q + + N++G++        TTA 
Sbjct: 120 LAGNNRSALALAEHIAGNEDNFTMLMNKKAKELKLLQPSPFLNSTGINHDTNKQSTTTAI 179

Query: 193 DQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGY 244
           D A L   L K+FP       +    F +++  + N NK++       K+  +DG++T +
Sbjct: 180 DAAKLAARLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSF 239

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           + N  ++ V++ +  D  +++V++          +  +L+    +  +    Q  +
Sbjct: 240 STNGNYSFVSTAKLGDTRLISVILDADEENISFIETKKLLQYGFDPSSYSALQAFK 295


>gi|227551939|ref|ZP_03981988.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecium
           TX1330]
 gi|257895469|ref|ZP_05675122.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium Com12]
 gi|293378334|ref|ZP_06624503.1| beta-lactamase [Enterococcus faecium PC4.1]
 gi|227178940|gb|EEI59912.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecium
           TX1330]
 gi|257832034|gb|EEV58455.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium Com12]
 gi|292643198|gb|EFF61339.1| beta-lactamase [Enterococcus faecium PC4.1]
          Length = 435

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 127/311 (40%), Gaps = 35/311 (11%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQ 94
           FL  + +  A +       ++  +D    ++   +  E     AS+TK++ LYI+ + ++
Sbjct: 22  FLPAVAV-QAEDTFKVNAKAAFAVDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQVK 80

Query: 95  SKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             KL  + ++ +S  A     T + S + L ++  +T ++   + I +SAN    A  E 
Sbjct: 81  EGKLSWDDKVSISDYAENLSVTPDLSNVPLHKENTYTVKELFDSAIIQSANASMVALAEK 140

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAI 196
           ISGSE KF   M  + K  G+++    NASGL+              +     +A+D AI
Sbjct: 141 ISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVAI 200

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIIT-----NHNKLLNKM----HNIDGIKTGYTRN 247
           +   L  +FP+     S     +     +     N N +L         +DG+KTG T  
Sbjct: 201 VARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTEL 260

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTLKH--QQTHRK 301
           +G   V ++   D  I+ VV+           R  +   L+    +  + K   +     
Sbjct: 261 AGACFVGTITKNDQRIITVVLNADGHAENPSARFNETARLMDYCYDNWSEKELGKANASI 320

Query: 302 DNLSSTSLKKS 312
            +L +  +K  
Sbjct: 321 PSLKTIDVKDG 331


>gi|225871199|ref|YP_002747146.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp. equi
           4047]
 gi|225700603|emb|CAW95132.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus equi
           subsp. equi 4047]
          Length = 412

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 71/341 (20%), Positives = 147/341 (43%), Gaps = 32/341 (9%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
           + + +   IL +S +     ++ +      +I ++++  ++   K  D+    ASL+K++
Sbjct: 2   KKVLIALTILAISCLAYPAQADHYDISAKHAIAVELDSGKILYEKDADKTVSVASLSKVL 61

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           T Y++++ +Q+ KL  ++ + +S            S + L  +  +T ++ + ALI  +A
Sbjct: 62  TAYLVYKEVQAGKLKWDSSVTISNYPYKLTTNYTISNVPLDAR-KYTVKELLKALIVTNA 120

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKN 186
           N  + A  E I G+E KF   M  + K  G+      NASGL               D +
Sbjct: 121 NSPAIALAEKIGGTEAKFVDKMIAQLKDWGITGAKVVNASGLPNHILGEHIYPGSSLDDD 180

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIKT 242
              +A D A++   L K FP+  K  S  +  + ++ I ++N +L  M      +DG+  
Sbjct: 181 NQFSAADLALVTSHLLKEFPEVLKLSSQVQAEFNHQQIFSYNYMLKGMPNYRDGVDGLFV 240

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE--------LITSFLEKKTLK 294
            Y+   G + + +    +  I+ VV+    +Q+ D             ++T F +   L+
Sbjct: 241 SYSEKGGSSFLATSVENNMRIITVVLNADHAQDNDTAVFTATNQLLQYVLTHFKKVVVLE 300

Query: 295 HQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
             +  +   L      +  +    K+  +  K +D K+ +T
Sbjct: 301 KGKPDQLKALPVLDSPQKKIQLVPKKKLTMIKALDDKSKTT 341


>gi|309805391|ref|ZP_07699440.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners
           LactinV 09V1-c]
 gi|308165318|gb|EFO67552.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners
           LactinV 09V1-c]
          Length = 425

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 72/338 (21%), Positives = 132/338 (39%), Gaps = 41/338 (12%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKL 98
           I  + A +  A    ++I+ D+   Q+   K    + P AS++K++T+Y+  + +++ KL
Sbjct: 49  ICDNYAQDNLALNAKAAIIYDLKSGQIMYAKNITQKLPVASMSKLLTIYLTLKAIKAGKL 108

Query: 99  HLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
              T++  S+ A         S + L+    +T  Q   A + +SAN  +      ++GS
Sbjct: 109 SWQTKVMPSREAIAVSKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGS 168

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAILGIL 200
            KKF  +M  +     +        SGL               D     +A D  IL   
Sbjct: 169 SKKFVGMMRKQLLDWHISQAQIVTPSGLPNFTLGRDADSTKNADAENELSASDMGILIKH 228

Query: 201 LRKNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKM------HNIDGIKTGYTRNSGF 250
           L   FPQ      I K  +        + N N +L  +      + +DG+KTG T  +G 
Sbjct: 229 LLLEFPQVLDTTRISKLNFPDGHNTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGA 288

Query: 251 NIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTL--------KHQQT 298
            + ++L      IV V++G          R  +  +L   F    +L           +T
Sbjct: 289 CLASTLVKNGRRIVTVIIGARHLNGNDPARFVETKKLYAYFYNNYSLHIYKRWTQFPGKT 348

Query: 299 HRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
             K   S  +  ++ + +      S+ +K+DA+    +
Sbjct: 349 LIKVKNSPINEVRACLYQDTGIWISKGQKLDAELSMNK 386


>gi|225573149|ref|ZP_03781904.1| hypothetical protein RUMHYD_01340 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039504|gb|EEG49750.1| hypothetical protein RUMHYD_01340 [Blautia hydrogenotrophica DSM
           10507]
          Length = 412

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 128/292 (43%), Gaps = 36/292 (12%)

Query: 28  IQLMGKILFLSII-MISMASELHAKPKYS---------SIVIDVNKNQMTGFKQDEPR-Y 76
           + LMG+ +F  +   +S   E+    + S          +V+DV    +   K  E   Y
Sbjct: 16  VSLMGQTVFAQVEEPVSTKGEMDEPAENSQRVKVSSECGLVMDVGTQTVLYEKNGEELHY 75

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGI 132
           PAS+TK++T  ++ E     +  L+  +  S  A     + + +    +     T E  +
Sbjct: 76  PASITKLLTALVVME-----RCELDETVIFSHDAVYEVESGSGNNQGFEAGDKLTVEDCL 130

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
            A+I  S+N  + A  E  SGS + F   M+ KA+++G +N+ ++N SGL+D+ Q TTA 
Sbjct: 131 YAMILESSNPAANALAEHTSGSLEAFVNEMNQKAEELGCENSNFENPSGLNDEAQKTTAY 190

Query: 193 DQAILGILLRKNFPQYYKYFSIRKF-------RYRNRIITNHNKLLNKM------HNIDG 239
           D  ++   + KN     +  S   +       +    ++   ++L+N         ++  
Sbjct: 191 DMGLISSEVFKN-DTLKEICSAETYQLPPTLNQTEGYLLHMEHRLVNGEEQKDDRWDLVA 249

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
            KTGYT  +G  +VT     D  +V+VVM   + Q   +    L+    +  
Sbjct: 250 GKTGYTTMAGNTLVTYAEEDDKQLVSVVM--QSEQTHYEDTNNLLNYGFDNY 299


>gi|325675587|ref|ZP_08155271.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus equi ATCC
           33707]
 gi|325553558|gb|EGD23236.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus equi ATCC
           33707]
          Length = 444

 Score =  195 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 56/270 (20%), Positives = 98/270 (36%), Gaps = 25/270 (9%)

Query: 37  LSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
             ++       L A+      ++ D++  Q+   K    RY PAS  K++   +  + L 
Sbjct: 104 CGVVTAPGTPPLPAEISATGWVLSDLDTGQVLAAKDPHGRYRPASTIKVLLALVALDELD 163

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
                L+T I  +  AA+   S + L     ++  Q +  L+ RS ND + A  + + G 
Sbjct: 164 -----LDTTIVANPEAASMEGSSVGLGAGGTYSNLQLMQGLVMRSGNDAAQALAQQLGG- 217

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           E+     M+ KA  +G  +T   + SGL      T+  D A+      +N P +    + 
Sbjct: 218 EQATVAKMNAKAASLGASDTRTASVSGLDGPGMSTSPYDLALFFRAAMQN-PTFAGLITT 276

Query: 215 RKFRYRN---------------RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
               +                   I N N+LL       G KTGYT ++    V      
Sbjct: 277 DTVMFPGHPADPTKPDDKPVDPYPIFNDNQLLANYPGALGGKTGYTDDARQTFVGGAERD 336

Query: 260 DDPIVAVVMGMPTSQER-DQKALELITSFL 288
              +   +M       R  ++   L+    
Sbjct: 337 GRRLAVTLMAADVLPIRPWEQVGRLLDYGW 366


>gi|315653180|ref|ZP_07906105.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners ATCC
           55195]
 gi|315489545|gb|EFU79182.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners ATCC
           55195]
          Length = 429

 Score =  195 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 117/287 (40%), Gaps = 33/287 (11%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKL 98
           I  + A +  A    ++I+ D+   Q+   K  + + P AS++K++T+Y+  + + + K+
Sbjct: 53  ICDNYAQDNLALNAKAAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTVYLTLKAINAGKI 112

Query: 99  HLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
              T++  S+ A         S + L+    +T +Q   A + +SAN  +      ++GS
Sbjct: 113 SWQTKVMPSREAIAVSKNPEYSNVPLQLGHQYTIKQLYQATLIQSANGAAMVLASAVAGS 172

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAILGIL 200
            KKF  +M  +     +        SGL               D     +A D  IL   
Sbjct: 173 SKKFVGMMRKQLLDWHISQAQIVTPSGLPNFTLGRDADSNKNADAENELSASDMGILIKH 232

Query: 201 LRKNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKM------HNIDGIKTGYTRNSGF 250
           L   FPQ      I K  +    +   + N N +L  +      + +DG+KTG T  +G 
Sbjct: 233 LLLEFPQVLDTTRISKLDFLDGRKTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGA 292

Query: 251 NIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTL 293
            + ++L      I+ V++G      +   R  +  +L   F    +L
Sbjct: 293 CLASTLVKNGRRIITVIIGARHLNGSDPARFVETKKLYAYFYNNYSL 339


>gi|288921678|ref|ZP_06415947.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Frankia sp.
           EUN1f]
 gi|288346947|gb|EFC81255.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Frankia sp.
           EUN1f]
          Length = 572

 Score =  195 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 58/249 (23%), Positives = 95/249 (38%), Gaps = 15/249 (6%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            E       + +V D     +        P  PAS  KM+T   +   L   ++     +
Sbjct: 89  PEPAGITAEAWMVADAISGAILAAHNPNLPDLPASTMKMLTALTVLPSLPPDRV-----V 143

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
            +S  AA  + +++ L     +T      A++  S ND + A  E  +G        M+ 
Sbjct: 144 TISDEAARVDGTRVGLVPGVRYTVRDLATAMLIASGNDATVALVEA-AGGRDAVLERMNR 202

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI- 223
            A  +G  +T+  + +GL    Q TTA D A++G  +  N P    Y +I +     R  
Sbjct: 203 LAASLGAHDTVAGDPTGLDAPGQHTTAHDLAVIGRAVLNN-PTVRAYLTIPRAVLPGRGD 261

Query: 224 ----ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
               I NHN LL       GIK GYT  +G   V +       ++  ++   T+      
Sbjct: 262 ERFEIANHNTLLGTYEGTIGIKNGYTIAAGATFVGAAVRDGRTLIVSLL--RTAPTYATD 319

Query: 280 ALELITSFL 288
           A  L+    
Sbjct: 320 AKALLDWGF 328


>gi|300779711|ref|ZP_07089567.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
           genitalium ATCC 33030]
 gi|300533821|gb|EFK54880.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
           genitalium ATCC 33030]
          Length = 434

 Score =  195 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 59/288 (20%), Positives = 117/288 (40%), Gaps = 22/288 (7%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A    + +V DV+   +   K    RY PAS+ K++   +  +     +L L+ ++ VS+
Sbjct: 119 AVVSAAWLVADVDTGDVIAMKDPHGRYRPASIIKVLLALVAID-----ELPLDKKVTVSE 173

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            +A Q  S + +     +T    +  L+  S ND S A  + + G +      ++ KA++
Sbjct: 174 ESAGQEGSAVGIGAGGEYTINDLLHGLLMVSGNDASHALAQELGGDQAT-LEKINAKARE 232

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI----- 223
           + +++T   + SGL      T+A D  +   +  +N   +        + +   I     
Sbjct: 233 LNLRDTYAASYSGLDAPGMSTSAWDMGLAYRVAYEN-GTFANIIKTEMYPFPGYIAADGT 291

Query: 224 ------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER- 276
                 + N N L     +  G KTGYT ++    V +L      ++AVV+     + R 
Sbjct: 292 VFEPFDVYNDNHLYLNDPDGIGGKTGYTDDAHHTFVGALDRDGRRLMAVVLDTTADEARA 351

Query: 277 DQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
            ++A  L+       +   +     D++S+   +    I     T S+
Sbjct: 352 WEQAQRLLHESYRFTS--SEAVASLDDVSADPTETGTPITDEPGTDSR 397


>gi|309803471|ref|ZP_07697565.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners
           LactinV 11V1-d]
 gi|308164480|gb|EFO66733.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners
           LactinV 11V1-d]
          Length = 425

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 119/287 (41%), Gaps = 33/287 (11%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKL 98
           I  + A +  A    ++I+ D+   Q+   K  + + P AS++K++T+Y+  + +++ KL
Sbjct: 49  ICDNYAQDNLALNAKAAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAIKAGKL 108

Query: 99  HLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
              T++  S+ A         S + L+    +T +Q   A + +SAN  +      ++GS
Sbjct: 109 SWQTKVMPSREAIAVSKNPEYSNVPLQLGHQYTIKQLYQATLIQSANGAAMVLASAVAGS 168

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAILGIL 200
            KKF  +M N+     +        SGL               D     +A D  IL   
Sbjct: 169 SKKFVGMMRNQLLDWHISQAQIVTPSGLPNFTLGRDADSSKNADAENELSASDMGILIKH 228

Query: 201 LRKNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKM------HNIDGIKTGYTRNSGF 250
           L   FPQ  +   I K  +    +   + N N +L  +      + +DG+KTG T  +G 
Sbjct: 229 LLLEFPQVLETTRIAKLDFLDGRKTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGA 288

Query: 251 NIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTL 293
            + ++L      IV V++G          R  +  +L   F    +L
Sbjct: 289 CLASTLVKNGRRIVTVIIGARHLNGNDPARFVETKKLYAYFYNNYSL 335


>gi|289824265|ref|ZP_06543860.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 462

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNT--QIPVSKTAA 111
           S++++D+N N++      +  R  AS+TK+MT  ++ +     +L L+   ++ +S+T  
Sbjct: 29  SAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDA----RLPLDEILKVDISQTP- 83

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +   +  G    F   M+ KAK +GM
Sbjct: 84  EMKGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGM 143

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT-- 225
            +T +   +GL   N ++TARD   L ++  K +P   +  + R+    F +    +   
Sbjct: 144 THTRFVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTREDMATFSHPAYTLPFR 201

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L 
Sbjct: 202 NTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLR 261

Query: 285 TS 286
           T 
Sbjct: 262 TW 263


>gi|229095861|ref|ZP_04226840.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
 gi|229114814|ref|ZP_04244228.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
 gi|228668879|gb|EEL24307.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
 gi|228687694|gb|EEL41593.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
          Length = 407

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 72/286 (25%), Positives = 126/286 (44%), Gaps = 19/286 (6%)

Query: 56  SIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +  ID     +   K    R YPAS+TK++T  ++ E+ +        Q   S+ A  Q 
Sbjct: 31  AATIDAKTGDLLYDKNAHHRAYPASVTKVLTAILLMEHTKP-----EDQFTFSQLALDQE 85

Query: 115 PSKLYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
            S   ++            ++ L+  SANDVS A  E I GS + FA +M+ KAK++G  
Sbjct: 86  KSNYQIEFQPGETVNRNTALMILMVLSANDVSYAIAEHIGGSVENFANMMNEKAKQLGAT 145

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIITNHNKL 230
           ++ +   +GLHD N  TT  D A++   ++K +P+  +  + ++       + ++  NK 
Sbjct: 146 DSHFVTPNGLHDPNHYTTPYDIAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKS 204

Query: 231 LN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSF 287
           +  +     G KTG+T  +   +V       + I+ VVM     +  E  ++  E     
Sbjct: 205 IYFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMAEYSFGQ 264

Query: 288 LEKKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
             K+T+      HQ+T   +    + L+KS  +   K      K I
Sbjct: 265 FTKQTVLDKHSWHQKTTYLNKDIDSELEKSAELVLKKDEGKNVKTI 310


>gi|153933846|ref|YP_001384111.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str.
           ATCC 19397]
 gi|153934860|ref|YP_001387651.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str.
           Hall]
 gi|152929890|gb|ABS35390.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           botulinum A str. ATCC 19397]
 gi|152930774|gb|ABS36273.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           botulinum A str. Hall]
          Length = 378

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 71/271 (26%), Positives = 119/271 (43%), Gaps = 16/271 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +I ID +   +   K      P AS TK+MT  +  +Y       L+ +I +S+ A    
Sbjct: 45  AIAIDKDTGIVLFEKSANGIVPIASTTKIMTTLVALKYGD-----LDRKIEISENADKIR 99

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S +  ++       + +  L+ RS ND + A  E I+GS + F+ LM+  A +IG+ N+
Sbjct: 100 GSVVGYRKGEKIALRELLYGLMLRSGNDAAIAIAEGIAGSVEGFSKLMNEYASEIGLLNS 159

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS---IRKFRYR-NRIITNHNKL 230
            +    GL      +TA D A L     K +  + K  S   ++K  Y   R   N NK+
Sbjct: 160 HFITPHGLDKDEHYSTAYDLA-LATATAKKYELFNKIVSSKDVKKEEYNFTRDYHNINKI 218

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L K+   DG+KTGYT  +G  +VTS +   + I+ VV+          K    + +  + 
Sbjct: 219 LWKIPEADGVKTGYTGKAGKCLVTSSKINGNDIIIVVLNCTPRWNETTKIHNYVKNNYDF 278

Query: 291 KTL-----KHQQTHRKDNLSSTSLKKSLMIK 316
           K +        Q   ++   +    K ++I 
Sbjct: 279 KKICTRGDILDQAVFEEGSVNIIADKDIIIP 309


>gi|312872197|ref|ZP_07732270.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092281|gb|EFQ50652.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF
           2062A-h1]
          Length = 425

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 64/287 (22%), Positives = 116/287 (40%), Gaps = 33/287 (11%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKL 98
           I  + A +  A    ++I+ D+   Q+   K    + P AS++K++T+Y+  + +++ K+
Sbjct: 49  ICDNYAQDNLALNAKAAIIYDLKSGQIMYAKNITQKLPVASMSKLLTIYLTLKAIKAGKI 108

Query: 99  HLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
              T++  S+ A         S + L+    +T  Q   A + +SAN  +      ++GS
Sbjct: 109 SWQTKVMPSREAIAVSKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGS 168

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAILGIL 200
            KKF  +M  +     +        SGL               D     +A D  IL   
Sbjct: 169 SKKFVGMMRKQLLDWHISQAQIVTPSGLPNFTLGRDADSTKNADAENELSASDMGILIKH 228

Query: 201 LRKNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKM------HNIDGIKTGYTRNSGF 250
           L   FPQ  +   I K  +    +   + N N +L  +      + +DG+KTG T  +G 
Sbjct: 229 LLLEFPQVLETTRIAKLDFLDGRKTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGA 288

Query: 251 NIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTL 293
            + ++L      IV V++G          R  +  +L   F    +L
Sbjct: 289 CLASTLVKNGRRIVTVIIGARHLNGNDPARFVETKKLYAYFYNNYSL 335


>gi|331086847|ref|ZP_08335924.1| hypothetical protein HMPREF0987_02227 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410013|gb|EGG89448.1| hypothetical protein HMPREF0987_02227 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 557

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 59/297 (19%), Positives = 125/297 (42%), Gaps = 28/297 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + I++D+N   +   K  DE  +PAS+TK+MT  +  E  +     L  ++  ++ + 
Sbjct: 128 AEAGIIMDMNSGAILYAKNIDEKEFPASITKIMTALVALENSE-----LTDKVHFTEESV 182

Query: 112 T---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                  + + ++     T E  +  ++  SAN+VS A  + +      F  +M+ KA++
Sbjct: 183 AFLEYGDASIGMQPGEEITMEDALYGMLLASANEVSYAIADTVGNGYDNFIRMMNEKAEE 242

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN-- 226
           +G  NT + N  GLHD+    +ARD A++     +   ++ K  +  + R     + N  
Sbjct: 243 LGCTNTHFTNPHGLHDEEHYVSARDMALIASAAFQ-HEEFRKITNTYEHRIPPTNLVNEE 301

Query: 227 -----HNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE- 275
                ++++L            G KTGYT  +   +V+ L   +  +V+V +        
Sbjct: 302 RVFQQYHQMLYDGTDTFYEPCVGGKTGYTDQALSTLVSYLDNGELQLVSVNLKTHGVHVY 361

Query: 276 -RDQKALELITSFLEKKTLKHQQTHRK----DNLSSTSLKKSLMIKKLKRTYSQFKK 327
              +   E + +  +K  L+ +   +     +  +   + K++  + +K       K
Sbjct: 362 PDTKNMAEYVFNNFKKIPLEGKDLPKGVKETEEDAYIVVPKNVEFQDVKAEIVPEDK 418


>gi|329919680|ref|ZP_08276658.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners SPIN
           1401G]
 gi|328937332|gb|EGG33756.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners SPIN
           1401G]
          Length = 423

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 64/287 (22%), Positives = 114/287 (39%), Gaps = 33/287 (11%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKL 98
           I  + A +  A    ++I+ D+   Q+   K  + + P AS++K++T+Y+  + + + K+
Sbjct: 47  ICDNYAQDNLALNAKAAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAINAGKI 106

Query: 99  HLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
              T++  S+ A         S + L+    +T  Q   A + +SAN  +      ++GS
Sbjct: 107 SWQTKVMPSREAIAVSKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGS 166

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAILGIL 200
            KKF  +M  +     +        SGL               D     +A D  IL   
Sbjct: 167 SKKFVGMMRKQLLDWHISQAQIVTPSGLPNFTLGRDADSNKNADAENELSASDMGILIKH 226

Query: 201 LRKNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKM------HNIDGIKTGYTRNSGF 250
           L   FPQ      I K  +        + N N +L  +      + +DG+KTG T  +G 
Sbjct: 227 LLLEFPQVLDTTRISKLNFPDGHNTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGA 286

Query: 251 NIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTL 293
            + ++L      IV V++G          R  +  +L   F    +L
Sbjct: 287 CLASTLVKNGRRIVTVIIGARHLNGNDPARFVETKKLYAYFYNNYSL 333


>gi|257886898|ref|ZP_05666551.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
           1,141,733]
 gi|257822952|gb|EEV49884.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
           1,141,733]
          Length = 435

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 127/311 (40%), Gaps = 35/311 (11%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQ 94
           FL  + +  A +       ++  +D    ++   +  E     AS+TK++ LYI+ + ++
Sbjct: 22  FLPSVAV-QAEDTFKVNAKAAFAVDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQVK 80

Query: 95  SKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             KL  + ++ +S  A     T + S + L ++  +T ++   + I +SAN    A  E 
Sbjct: 81  EGKLSWDDKVSISDYAENLSVTPDLSNVPLHKENTYTVKELFDSAIIQSANASMVALAEK 140

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAI 196
           ISGSE KF   M  + K  G+++    NASGL+              +     +A+D AI
Sbjct: 141 ISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVAI 200

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIIT-----NHNKLLNKM----HNIDGIKTGYTRN 247
           +   L  +FP+     S     +     +     N N +L         +DG+KTG T  
Sbjct: 201 VARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTEL 260

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTLKH--QQTHRK 301
           +G   V ++   D  I+ VV+           R  +   L+    +  + K   +     
Sbjct: 261 AGACFVGTITKNDQRIITVVLNADGHAENPSARFNETARLMDYCYDNWSEKELGKANASI 320

Query: 302 DNLSSTSLKKS 312
            +L +  +K  
Sbjct: 321 PSLKTIDVKDG 331


>gi|303241828|ref|ZP_07328323.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acetivibrio
           cellulolyticus CD2]
 gi|302590603|gb|EFL60356.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acetivibrio
           cellulolyticus CD2]
          Length = 429

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 128/293 (43%), Gaps = 36/293 (12%)

Query: 33  KILFLSIIMISMAS----ELHAKP----KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKM 83
           K LF+ IIM ++ +       A+P      + I+ID    Q+      D+  YPAS TK+
Sbjct: 2   KKLFIGIIMFTILNMNINTAKAEPLNIDAKAYILIDSKTGQVISEYNADQKLYPASTTKI 61

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSA 140
           MT  I  E    ++L     + VS+ A          + L        +  + AL+ RSA
Sbjct: 62  MTAIIGIENADPEQL-----MTVSQYAINNIGPGGMNIGLLPGEQLKFKDVLNALLVRSA 116

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK----NQITTARDQAI 196
           N+ +    E +  + + F   M+ +AK++   NT + N  G+       N +TTARD ++
Sbjct: 117 NETAYVIAENVGPTPEAFFAKMNQRAKELACTNTNFVNPCGMDTDEASQNHLTTARDLSL 176

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITN-------HNKLLNK------MHNIDGIKTG 243
           +        P + +             + N        NKL          + + GIKTG
Sbjct: 177 MAKHAM-TLPLFKEIVKKTSCTIPPTNMHNEAYTLPSTNKLFYGKYSSKYYNEVTGIKTG 235

Query: 244 YTRNSGFNIVTSLR-YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKH 295
           YT  + FN+V+S +  +   +++V++G P S+   Q + +L+    +  ++++
Sbjct: 236 YTVRASFNLVSSAKNEEGMELISVILGCPNSEGIYQSSKDLLEYGFKNYSMQN 288


>gi|195941738|ref|ZP_03087120.1| serine-type D-Ala-D-Ala carboxypeptidase (dacA) [Borrelia
           burgdorferi 80a]
 gi|218249458|ref|YP_002375112.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi ZS7]
 gi|226321911|ref|ZP_03797437.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
           Bol26]
 gi|218164646|gb|ACK74707.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi ZS7]
 gi|226233100|gb|EEH31853.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
           Bol26]
 gi|312148150|gb|ADQ30809.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi JD1]
 gi|312149468|gb|ADQ29539.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi N40]
          Length = 396

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 79/336 (23%), Positives = 135/336 (40%), Gaps = 40/336 (11%)

Query: 34  ILFLSIIMISMASELHA----------KPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTK 82
           +L L +I       L A          +   S +++D +  ++   K+      PASLTK
Sbjct: 2   LLTLFLIFFPFCYNLFAVNLAEINKLSEYAKSIVLMDFDTKRILYSKKPNLVFPPASLTK 61

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y      + + + L + +P+S +A    A  N S ++L++      E+ +  L   
Sbjct: 62  IVTIYTALIEAEKRNIKLKSIVPISDSASYYNAPPNSSLMFLEKGQIVNFEEILKGLSVS 121

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND S A  EF+ G+   F  LM+     +G+ N  +   SG   +N   TA D A   
Sbjct: 122 SGNDSSIAIAEFVVGNLNSFVNLMNINVLNLGLFNMHFVEPSGYSSEN-KITALDMAFFV 180

Query: 199 ILLRKNFPQYYKYFSIRKFRYR--------------NRIITNHNKLLNKMHNIDGIKTGY 244
               + F       S++ F Y               N    N N L+      DGIKTGY
Sbjct: 181 KSYIEKFKFMLNIHSLKYFIYPKSRNLGTALSSKFLNLKQRNANLLIYDYPYSDGIKTGY 240

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMP------TSQERDQKALELITSFLEKKTLKHQQT 298
            + SG N+V + +  +  ++AVV+G+         + R   A  L      K +      
Sbjct: 241 IKESGLNLVATAKKGERRLIAVVLGVEKGINGFGEKMRSSIAKNLFEYGFNKYSKFPLIV 300

Query: 299 HRKDNLSSTSLKKSLMIKKLKRTY----SQFKKIDA 330
             K+ + + ++    +  K    Y     +F KI+ 
Sbjct: 301 KLKEKVYNGTVDTVALFSKEPFYYILTKDEFDKINI 336


>gi|255348929|ref|ZP_05380936.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis 70]
 gi|255503469|ref|ZP_05381859.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis 70s]
 gi|255507147|ref|ZP_05382786.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
           D(s)2923]
 gi|289525596|emb|CBJ15074.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis Sweden2]
 gi|296435156|gb|ADH17334.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis E/150]
 gi|296438876|gb|ADH21029.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis E/11023]
          Length = 437

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 64/305 (20%), Positives = 123/305 (40%), Gaps = 38/305 (12%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPK------YSSIVIDVNKNQMTGFKQ-DEPRYPA 78
           R   L+ +  F+ +    ++  L+A P        ++ V+  +   +   K  D   +PA
Sbjct: 2   RTFFLLCR-FFICLAPFFLSFPLYADPHTVLTKGIAAAVVHADSGAILKEKNLDHKIFPA 60

Query: 79  SLTKMMTLYIIFEY--------LQSKKLHLNTQIPVSK---------TAATQNPSKLYLK 121
           S+TK+ T  +I           + +++  L +  P +K              +   + LK
Sbjct: 61  SMTKIATALLILRQYPDVLTRFITTRREPLTSITPQAKQQSGYRSPPHWLETDGMTIQLK 120

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
            K   +      AL+  SAND +    +    S   F   ++   +++G QNT + +  G
Sbjct: 121 VKEEVSGWDLFHALLISSANDAANVLADACCQSVSAFMRQLNEFLRELGCQNTHFNSPHG 180

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLLNK-- 233
           LH  +  TTARD +++     K  P + +      +          R++++ NKLL+   
Sbjct: 181 LHHPDHYTTARDLSLIMKEALKE-PLFRQVIHTASYTMEATNLSPERVLSSTNKLLSSSS 239

Query: 234 ---MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-DQKALELITSFLE 289
                   G KTG T+++G NI+ +    +  I+ V  G      +  Q A+ L      
Sbjct: 240 TYFYPPCLGGKTGTTKSAGKNIIFAAEKNNRSIIVVAAGYFGPAAQLYQDAIALCEDLFN 299

Query: 290 KKTLK 294
           ++ L+
Sbjct: 300 EQLLR 304


>gi|166154766|ref|YP_001654884.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis 434/Bu]
 gi|166155641|ref|YP_001653896.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301336040|ref|ZP_07224284.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis L2tet1]
 gi|165930754|emb|CAP04251.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis 434/Bu]
 gi|165931629|emb|CAP07205.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 437

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 64/305 (20%), Positives = 123/305 (40%), Gaps = 38/305 (12%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPK------YSSIVIDVNKNQMTGFKQ-DEPRYPA 78
           R   L+ +  F+ +    ++  L+A P        ++ V+  +   +   K  D   +PA
Sbjct: 2   RTFFLLCR-FFICLAPFFLSFPLYADPHTVLTKGIAAAVVHADSGAILKEKNLDHKIFPA 60

Query: 79  SLTKMMTLYIIFEY--------LQSKKLHLNTQIPVSK---------TAATQNPSKLYLK 121
           S+TK+ T  +I           + +++  L +  P +K              +   + LK
Sbjct: 61  SMTKIATALLILRQYPDVLTRFITTRREPLTSITPQAKQQSGYRSPPHWLETDGMTIQLK 120

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
            K   +      AL+  SAND +    +    S   F   ++   +++G QNT + +  G
Sbjct: 121 VKEEVSGWDLFHALLISSANDAANVLADACCQSVSAFMRQLNEFLRELGCQNTHFNSPHG 180

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLLNK-- 233
           LH  +  TTARD +++     K  P + +      +          R++++ NKLL+   
Sbjct: 181 LHHPDHYTTARDLSLIMKEALKE-PLFRQVIHTASYTMEATNLSPERVLSSTNKLLSSSS 239

Query: 234 ---MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-DQKALELITSFLE 289
                   G KTG T+++G NI+ +    +  I+ V  G      +  Q A+ L      
Sbjct: 240 TYFYPPCLGGKTGTTKSAGKNIIFAAEKNNRSIIVVAAGYFGPAAQLYQDAIALCEDLFN 299

Query: 290 KKTLK 294
           ++ L+
Sbjct: 300 EQLLR 304


>gi|237738804|ref|ZP_04569285.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 2_1_31]
 gi|229423907|gb|EEO38954.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 2_1_31]
          Length = 419

 Score =  195 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 76/257 (29%), Positives = 127/257 (49%), Gaps = 14/257 (5%)

Query: 56  SIVI-DVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++++ D+N   +   K  +  YP AS+TK+MTL + F+ + +  + LN  + +SKT    
Sbjct: 166 AVLVGDLN-GNVIFSKNADTMYPLASVTKVMTLLVTFDEINAGNISLNDSVRISKTPLKY 224

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQ 172
             S + LKE   F  E  I A    SAN+ + A  E++  GS   F   M+ K K++G+Q
Sbjct: 225 GGSGIALKEGQIFVLEDLIKASAVYSANNATYAIAEYVGEGSVFNFVAKMNKKLKQLGLQ 284

Query: 173 N-TIYKNASGLHDKNQIT-----TARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRII 224
           N   Y   +GL  +N        T R    L I   K + +Y +   I+  K       I
Sbjct: 285 NDIKYHTPAGLPTRNTKMPMDEGTPRGIYKLSIEALK-YHKYIEIAGIKNTKIYNGKISI 343

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            N N L+ +   + GIKTG+ + + +NI  +++++   ++ VVMG  T + RD     +I
Sbjct: 344 RNRNHLIGE-DGVYGIKTGFHKEAKYNITVAVKFEGIDLIIVVMGGETYKTRDDLVRTII 402

Query: 285 TSFLEKKTLKHQQTHRK 301
            +  E  T+++ Q  RK
Sbjct: 403 ANLKENYTVRNGQLIRK 419


>gi|119357228|ref|YP_911872.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354577|gb|ABL65448.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 291

 Score =  195 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 69/286 (24%), Positives = 124/286 (43%), Gaps = 26/286 (9%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMAS--------ELHAKPKYSSIVIDVNKNQMTGFKQD 72
            ++ +  + L    L   I M   A+         L      S I+ +   +++   K  
Sbjct: 6   RMFRKSVLFLFSMFLASGISMPVYAALPVDSLLQPLQPPEIGSYILKETGSSKVFMVKDS 65

Query: 73  EP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           E    PASLTK++T  I  E  Q     L+ ++ ++K A    PSK   K          
Sbjct: 66  EKTIQPASLTKILTSIIALESGQ-----LDDEVVITKEATMVEPSKAGFKPGERILLRDL 120

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD---KNQI 188
           + A +  S+ND + A G  + GS  +F   M+ KA+ IGM+++++ N +G         +
Sbjct: 121 VKAAMVSSSNDAAFAIGIHLEGSVPRFVRKMNRKARDIGMRHSVFTNPAGFDKRVYAGNV 180

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR------IITNHNKLLNKMHNIDGIKT 242
           +TA D   L     +N  ++ +  S+       R      ++  HNKLL K     GIKT
Sbjct: 181 STAEDLVKLTEYAIRN-RKFNEIASLESVLVTERSSNKIYLLKTHNKLLGKYPYAVGIKT 239

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           G+TR++G  ++   + ++  ++ V++      +R   A ++  S  
Sbjct: 240 GFTRSAGKCLIARAKKENKDMLLVLLDAKG--DRWSIAEQMFESAF 283


>gi|309807067|ref|ZP_07701047.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners
           LactinV 03V1-b]
 gi|312870869|ref|ZP_07730974.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF
           3008A-a]
 gi|308166563|gb|EFO68762.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners
           LactinV 03V1-b]
 gi|311093559|gb|EFQ51898.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF
           3008A-a]
          Length = 385

 Score =  195 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 64/287 (22%), Positives = 117/287 (40%), Gaps = 33/287 (11%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKL 98
           I  + A +  A    ++I+ D+   Q+   K  + + P AS++K++T+Y+  + +++ KL
Sbjct: 9   ICDNYAQDNLALNAKAAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAIKAGKL 68

Query: 99  HLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
              T++  S+ A         S + L+    +T  Q   A + +SAN  +      ++GS
Sbjct: 69  SWQTKVMPSREAIAVSKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGS 128

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAILGIL 200
            KKF  +M  +     +        SGL               D     +A D  IL   
Sbjct: 129 SKKFVGMMRKQLLDWHISQAQIVTPSGLPNFTLGRDADSNKNADAENELSASDMGILIKH 188

Query: 201 LRKNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKM------HNIDGIKTGYTRNSGF 250
           L   FPQ  +   I K  +    +   + N N +L  +      + +DG+KTG T  +G 
Sbjct: 189 LLLEFPQVLETTRIAKLDFLDGRKTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGA 248

Query: 251 NIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTL 293
            + ++L      I+ V++G          R  +  +L   F    +L
Sbjct: 249 CLASTLVKNGRRIITVIIGARHLNGNDPARFVETKKLYAYFYNNYSL 295


>gi|219685272|ref|ZP_03540092.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia garinii Far04]
 gi|219673368|gb|EED30387.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia garinii Far04]
          Length = 392

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 123/297 (41%), Gaps = 26/297 (8%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           K   S +++D +  ++   K       PASLTK++T+Y      + + + L + +P+S +
Sbjct: 29  KHAKSIVLMDFDTKRILYSKNPNLVFPPASLTKIVTIYTALIEAEKRNIKLKSIVPISDS 88

Query: 110 A----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           A    A  N S ++L++      E+ +  L   S ND S A  EF+ G    F  LM+  
Sbjct: 89  ASYYNAPLNSSLMFLEKGQIVNFEEILKGLSVSSGNDASIAIAEFVVGDLNSFVNLMNIN 148

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----- 220
              +G+ N  +   SG  ++N   TA D +       + F       S++ F Y      
Sbjct: 149 VLNLGLLNMHFVEPSGYSNEN-KITALDMSFFVKSYIEKFKFMLNIHSLKYFVYPKSKNL 207

Query: 221 ---------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
                    N    N N L++     DG+KTGY + SG N+V + +     ++AVV+G+ 
Sbjct: 208 GTTLSSKFLNLKQKNANLLISDYPYSDGLKTGYIKESGLNLVATAQKDGRRLIAVVLGVE 267

Query: 272 ------TSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTY 322
                   + R   A +L      + +        K+ + + ++    +  K    Y
Sbjct: 268 KGINRFGEKMRALIAKDLFEYGFNEYSKFSLIVKLKEKVYNGTVDTVALFSKEPFYY 324


>gi|298245363|ref|ZP_06969169.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
           racemifer DSM 44963]
 gi|297552844|gb|EFH86709.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
           racemifer DSM 44963]
          Length = 633

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 104/269 (38%), Gaps = 25/269 (9%)

Query: 39  IIMISMASELHAKPKYS--SIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQS 95
           +++ +  ++  + P Y+  + V+D +  +    +      P  S TK+MT Y+     + 
Sbjct: 272 VVVEAPTTDHPSPPVYANAAYVLDADTGKTLYAQNPLMHLPMLSTTKLMTAYLAAHMGKP 331

Query: 96  KKLHLNTQIPVS-------KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
                + +I ++       +   + + S + +K+   +T ++ +  L+  S ND +    
Sbjct: 332 -----DQRITITDAIDRDLQNDLSADSSLMGVKKGETYTLKELLYGLMLVSGNDAAIVIA 386

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           + +SG+   F   M+ +     + NT Y N  GL   N  ++A D A +G     + P  
Sbjct: 387 DALSGNVPAFVAKMNQQLGTWNLHNTHYMNPHGLIVPNHYSSAHDLAYIGRYSLSD-PLI 445

Query: 209 YKYFSIRKFRYRN------RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           ++  + + +            + N N+ L     +DG K G+     FN V S       
Sbjct: 446 HEVSATQHYLIPGNGDHAAHDMYNGNQFLWWYPGVDGGKPGWDGEKNFNQVISCVRNQHH 505

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKK 291
           ++ V +             +L+       
Sbjct: 506 LIGVTLHTSDW---WTDMRDLMNWGFNTY 531


>gi|51598858|ref|YP_073046.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia garinii PBi]
 gi|51573429|gb|AAU07454.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia garinii PBi]
          Length = 401

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 123/297 (41%), Gaps = 26/297 (8%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           K   S +++D +  ++   K       PASLTK++T+Y      + + + L + +P+S +
Sbjct: 38  KHAKSIVLMDFDTKRILYSKNPNLVFPPASLTKIVTIYTALIEAEKRNIKLKSIVPISDS 97

Query: 110 A----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           A    A  N S ++L++      E+ +  L   S ND S A  EF+ G    F  LM+  
Sbjct: 98  ASYYNAPLNSSLMFLEKGQIVNFEEILKGLSVSSGNDASIAIAEFVVGDLNSFVNLMNIN 157

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----- 220
              +G+ N  +   SG  ++N   TA D A       + F       S++ F Y      
Sbjct: 158 VLNLGLFNMHFVEPSGYSNEN-KITALDMAFFVKSYIEKFKFMLNIHSLKYFVYPKSKNL 216

Query: 221 ---------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
                    N    N N L++     DG+KTGY + SG N+V + +     ++AVV+G+ 
Sbjct: 217 GTTLSSKFLNLKQKNANLLISDYPYSDGLKTGYIKESGLNLVATAQKDGRRLIAVVLGVK 276

Query: 272 ------TSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTY 322
                   + R   A +L      + +        K+ + + ++    +  K    Y
Sbjct: 277 KGINGLGEKMRALIAKDLFEYGFNEYSKFPLIVKLKEKVYNGTVDTVALFSKEPFYY 333


>gi|223889041|ref|ZP_03623632.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 64b]
 gi|223885857|gb|EEF56956.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 64b]
          Length = 388

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 79/336 (23%), Positives = 135/336 (40%), Gaps = 40/336 (11%)

Query: 34  ILFLSIIMISMASELHA----------KPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTK 82
           +L L +I       L A          +   S +++D +  ++   K+      PASLTK
Sbjct: 2   LLTLFLIFFPFCYNLFAVNLAEINKLSEYAKSIVLMDFDTKRILYSKKPNLVFPPASLTK 61

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y      + + + L + +P+S +A    A  N S ++L++      E+ +  L   
Sbjct: 62  IVTIYTALIEAEKRNIKLKSIVPISDSASYYNAPPNSSLMFLEKGQIVNFEEILKGLSVS 121

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND S A  EF+ G+   F  LM+     +G+ N  +   SG   +N   TA D A   
Sbjct: 122 SGNDSSIAIAEFVVGNLNSFVNLMNINVLNLGLFNMHFVEPSGYSSEN-KITALDMAFFV 180

Query: 199 ILLRKNFPQYYKYFSIRKFRYR--------------NRIITNHNKLLNKMHNIDGIKTGY 244
               + F       S++ F Y               N    N N L+      DGIKTGY
Sbjct: 181 KSYIEKFKFMLNIHSLKYFIYPKSRNLGTALSSKFLNLKQRNANLLIYDYPYSDGIKTGY 240

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMP------TSQERDQKALELITSFLEKKTLKHQQT 298
            + SG N+V + +  +  ++AVV+G+         + R   A  L      K +      
Sbjct: 241 IKESGLNLVATAKKGERRLIAVVLGVEKGINGFGEKMRSSIAKNLFEYGFNKYSKFPLIV 300

Query: 299 HRKDNLSSTSLKKSLMIKKLKRTY----SQFKKIDA 330
             K+ + + ++    +  K    Y     +F KI+ 
Sbjct: 301 KLKEKVYNGTVDTVALFSKEPFYYILTKDEFDKINI 336


>gi|168704549|ref|ZP_02736826.1| D-alanyl-D-alanine carboxypeptidase [Gemmata obscuriglobus UQM
           2246]
          Length = 304

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/270 (24%), Positives = 106/270 (39%), Gaps = 27/270 (10%)

Query: 45  ASELHAKPKYSS---IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           A ++   P  S+    V D    ++     + +P   AS TK+MT YI+ +        L
Sbjct: 36  AEKVGGPPVVSAKGWAVADGKTGKVLWGGNEKDPLPIASTTKIMTAYIVLKLAAEDAKVL 95

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS------GS 154
           +  +  S+ A     S   LK        + +  L+  S ND + AF E         G 
Sbjct: 96  DEVLTFSEAADKVVGSSSDLKAGDKVAVRELLYGLLLPSGNDAAHAFAEHFGPRFKSVGK 155

Query: 155 EKK----FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           E+     F   M+  AK + M  T Y +  GL     + + RD   L     K+ P + K
Sbjct: 156 EQDPVASFVAQMNATAKALKMGETNYLDPHGLT--RNVASPRDLVTLAFHAMKD-PAFAK 212

Query: 211 YFSIRKFR---------YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           Y   R+ +          R     N NKLL+ +   +GIKTG T  +G  +V+      D
Sbjct: 213 YVQTRRHKCTVTDKDGNAREVTWNNTNKLLD-IEGYEGIKTGTTTAAGACLVSCGTLNGD 271

Query: 262 PIVAVVMGMPTSQERDQKALELITSFLEKK 291
            ++ V +G  +S  R   +  L      ++
Sbjct: 272 RLIVVALGSTSSDNRYTDSRNLYRWAWAER 301


>gi|271968855|ref|YP_003343051.1| D-alanyl-D-alanine carboxypeptidase-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270512030|gb|ACZ90308.1| D-alanyl-D-alanine carboxypeptidase-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 313

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 107/242 (44%), Gaps = 18/242 (7%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAAT 112
           + D     +   KQ   R P ASLTK+MT Y++          LN  + V+    + AAT
Sbjct: 64  LFDPGTGTVHLSKQATRRMPVASLTKVMTAYVVLREA-----GLNDIVTVNAGDVRHAAT 118

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
            + +   L+     T  + +   +  S  D + A        E +F   M+  A+ +G+ 
Sbjct: 119 NDATAAALRAGERLTVRELLYGAMLPSGADATHALARVYGPGESRFVAKMNAAARSLGLT 178

Query: 173 NTIYKNASGLHDKN-QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN------RIIT 225
            T Y N+ GL   +   +TA+DQA L  ++ ++ P      S R++  R        + T
Sbjct: 179 GTRYGNSDGLPKPSPGYSTAQDQARLADVVLRD-PVLRTIASTRRYVVRKSKVHRAHVWT 237

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N NKLL +     G+KTGYTR +G+ +  +       ++ V++G   +  R Q A  L+ 
Sbjct: 238 NTNKLLGEAPGALGVKTGYTRAAGYCLSFAADRDGHRLIGVILGDTRADRRFQTAGRLLD 297

Query: 286 SF 287
             
Sbjct: 298 WA 299


>gi|293571656|ref|ZP_06682677.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E980]
 gi|291608326|gb|EFF37627.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E980]
          Length = 435

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 68/311 (21%), Positives = 128/311 (41%), Gaps = 35/311 (11%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQ 94
           FL  + +  A +       ++  +D    ++   +  E     AS+TK++ LYI+ + ++
Sbjct: 22  FLPAVAV-QAEDTFKVNAKAAFAVDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQVK 80

Query: 95  SKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             KL  + ++ +S  A     T + S + L ++  +T ++   + I +SAN    A  E 
Sbjct: 81  EGKLSWDDKVSISDYAENLSVTPDLSNVPLHKENTYTVKELFDSAIIQSANASMVALAEK 140

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAI 196
           I+GSE KF   M  + K  G+++ +  NASGL+              +     +A+D AI
Sbjct: 141 IAGSEAKFTERMKEQLKDWGIKDAMIVNASGLNNSYLGENRPEGTGENDENQMSAQDVAI 200

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIIT-----NHNKLLNKM----HNIDGIKTGYTRN 247
           +   L  +FP+     S     +     +     N N +L         +DG+KTG T  
Sbjct: 201 VARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTEL 260

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTLKH--QQTHRK 301
           +G   V ++   D  I+ VV+           R  +   L+    +  + K   +     
Sbjct: 261 AGACFVGTITKNDQRIITVVLNADGHAENPSARFNETARLMDYCYDNWSEKELGKANASI 320

Query: 302 DNLSSTSLKKS 312
            +L +  +K  
Sbjct: 321 PSLKTIDVKDG 331


>gi|325913382|ref|ZP_08175749.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners UPII
           60-B]
 gi|325477308|gb|EGC80453.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners UPII
           60-B]
          Length = 434

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 71/338 (21%), Positives = 136/338 (40%), Gaps = 41/338 (12%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKL 98
           I  + A +  A    ++I+ D+   Q+   K  + + P AS++K++T+Y+  + +++ KL
Sbjct: 58  ICDNYAQDNLALNAKAAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAIKAGKL 117

Query: 99  HLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
              T++  S+ A         S + L+    +T +Q   A + +SAN  +      ++GS
Sbjct: 118 SWQTKVMPSREAIAVSKNPEYSNVPLQLGHQYTIKQLYQATLIQSANGAAMVLASAVAGS 177

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAILGIL 200
            KKF  +M  +     +        SGL               D     +A D  IL   
Sbjct: 178 SKKFVGMMRKQLLDWHISQAQIVTPSGLPNFTLGRDADSNKNADAENELSASDMGILIKH 237

Query: 201 LRKNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKM------HNIDGIKTGYTRNSGF 250
           L   FPQ  +   I K  +    +   + N N +L  +      + +DG+KTG T  +G 
Sbjct: 238 LLLEFPQVLETTRIAKLDFLDGRKTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGA 297

Query: 251 NIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTLKHQQTHRKDNLSS 306
            + ++L      IV V++G      +   R  +  +L   F    +L   +   +    +
Sbjct: 298 CLASTLVKNGRRIVTVIIGARHLNGSDPARFVETKKLYAYFYNNYSLHIYKRWTQFPDKT 357

Query: 307 TSLKKSLMIKKLKRTYSQF--------KKIDAKAHSTQ 336
               K+  I +++    Q         +K+DA+    +
Sbjct: 358 LIKVKNRTINEVRACLYQDTGIWISKGQKLDAELSMNK 395


>gi|259501428|ref|ZP_05744330.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus iners DSM
           13335]
 gi|259167177|gb|EEW51672.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus iners DSM
           13335]
          Length = 429

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 64/287 (22%), Positives = 114/287 (39%), Gaps = 33/287 (11%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKL 98
           I  + A +  A    ++I+ D+   Q+   K  + + P AS++K++T+Y+  + + + K+
Sbjct: 53  ICDNYAQDNLALNAKAAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAINAGKI 112

Query: 99  HLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
              T++  S+ A         S + L+    +T  Q   A + +SAN  +      ++GS
Sbjct: 113 SWQTKVMPSREAIAVSKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGS 172

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAILGIL 200
            KKF  +M  +     +        SGL               D     +A D  IL   
Sbjct: 173 SKKFVGMMRKQLLDWHISQAQIVTPSGLPNFTLGRDADSNKNADAENELSASDMGILIKH 232

Query: 201 LRKNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKM------HNIDGIKTGYTRNSGF 250
           L   FPQ      I K  +        + N N +L  +      + +DG+KTG T  +G 
Sbjct: 233 LLLEFPQVLDTTRISKLNFPDGHNTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGA 292

Query: 251 NIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTL 293
            + ++L      IV V++G          R  +  +L   F    +L
Sbjct: 293 CLASTLVKNGRRIVTVIIGARHLNGNDPARFVETKKLYAYFYNNYSL 339


>gi|227517264|ref|ZP_03947313.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis TX0104]
 gi|227075271|gb|EEI13234.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis TX0104]
          Length = 493

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 129/298 (43%), Gaps = 37/298 (12%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQDE 73
           L   YG+ + Q  +    + +  + I   M + L A     ++IV+D +  ++   +Q +
Sbjct: 22  LVVSYGAFFAQPTVTHAEEDI--TAIAKKMGTTLKADGIPKAAIVVDADSGEILWSQQPD 79

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT----- 127
               PAS+ K+MT+Y+ FE ++  K  ++T +  ++     + SK+Y       T     
Sbjct: 80  LAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DVDISKIYAISNNKITLGVAY 137

Query: 128 -TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL--- 182
              + +  +   S+N  +      ISG++   F  LM+ KA ++GM NT Y N SG    
Sbjct: 138 PVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQAS 197

Query: 183 ------------HDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIIT 225
                        + + ++TARD A L     KN+P+  +                    
Sbjct: 198 AFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEETFE 257

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            +N  L         +DG+KTG +   GFN + +++  D  ++ V++G+   Q +D +
Sbjct: 258 AYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDGE 315


>gi|187779942|ref|ZP_02996415.1| hypothetical protein CLOSPO_03538 [Clostridium sporogenes ATCC
           15579]
 gi|187773567|gb|EDU37369.1| hypothetical protein CLOSPO_03538 [Clostridium sporogenes ATCC
           15579]
          Length = 424

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 85/324 (26%), Positives = 139/324 (42%), Gaps = 40/324 (12%)

Query: 25  QRNIQLMGKILFLSIIM--ISMASELHAKPKY----SSIVIDVNKNQMTGFKQ-DEPRYP 77
           +  + L+  ++F+  +   +  A + + +P      +++ IDV   ++   K  D+  YP
Sbjct: 3   KGKMTLISLLIFIFTLTSNVFAAGDSNTEPPIIYGKTAMTIDVETGEIIYAKNIDKRMYP 62

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-----YLKEKTYFTTEQGI 132
           AS TK +T  ++ E     K   N  IP + TA +Q P  +      +        E  +
Sbjct: 63  ASTTKYLTALLLAEN--KGK---NDNIPYTATAKSQPPYSMNINLHPINIGETIKAENVM 117

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             L+  S ND +   G+ ++G+ K F  +M+ K +++ ++NT +   +GLH+ N  TTA 
Sbjct: 118 DGLLLFSGNDTAYMIGDALAGNSKNFENMMNKKIQELNLKNTHFVTPNGLHNPNHYTTAY 177

Query: 193 DQAILGILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRN 247
           D +I+     KN P  Y     K  SI   +     + N NKLL K       KTGYT  
Sbjct: 178 DLSIISRAALKN-PWVYQSSNKKESSIVTSKGTKMTVENSNKLLGK-DGCVAGKTGYTDA 235

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKKTLKHQQTHRKDNL 304
           +G  +VT     D  I+ VVMG     +     +   ++I      K             
Sbjct: 236 AGRCLVTLFNRDDRKILGVVMGSVYDAKDSFVFEDMKKIIDWSYNIK------------- 282

Query: 305 SSTSLKKSLMIKKLKRTYSQFKKI 328
            ST  KK   +K    TY+  K I
Sbjct: 283 PSTLYKKDSALKTETVTYNPLKFI 306


>gi|259048108|ref|ZP_05738509.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella adiacens
           ATCC 49175]
 gi|259035169|gb|EEW36424.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella adiacens
           ATCC 49175]
          Length = 465

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 73/328 (22%), Positives = 129/328 (39%), Gaps = 43/328 (13%)

Query: 29  QLMGKILFLSIIMISMASELHAKPK-------------YSSIVIDVNKNQMTGFKQ-DEP 74
           + +  +   ++   S    ++A+                S I I+    ++      DE 
Sbjct: 10  KFVCALSIFAMSATSFTPVIYAQDAAKEKEEAAAIQDVQSYIAIEQTSGKILMQNNQDEV 69

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQ 130
           R  AS++KM++ Y+I E ++  ++   T+IP+S  A    A  N S + L     +T ++
Sbjct: 70  RGIASMSKMISQYLILESIKKGEITWETKIPISARANQLSANYNLSNVPLWPNEKYTIKE 129

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK----- 185
              A+   SAN  + A  E+I GSE  +   M  K  + G+++    N +GL +K     
Sbjct: 130 LFDAISIYSANAATLAIAEYIGGSEANWIERMKAKLNEWGIKDATIINVTGLPNKYGGSE 189

Query: 186 ---------NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NRIITNHNKLL 231
                        +AR  AI+   L  +FP+  K  SI    +R        + N N LL
Sbjct: 190 KNPAFGDEDENSMSARSVAIIAKNLVNDFPEILKISSIPTQTFRPNGSGTTKMDNFNYLL 249

Query: 232 NK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
                    + G+KTG + + G +I T+       ++ V MG      R +    L+   
Sbjct: 250 PGLLFEYEGVTGLKTGTSESGGASITTTATRNGFSVIVVSMGSKEPLNRFKVTRHLLDEL 309

Query: 288 LEKK--TLKHQQTHRKDNLSSTSLKKSL 313
            +K    +         NL+   L+   
Sbjct: 310 FKKYEGLIVGSPGKSVQNLAPIPLEGGT 337


>gi|258614356|ref|ZP_05712126.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium DO]
 gi|261209455|ref|ZP_05923818.1| predicted protein [Enterococcus faecium TC 6]
 gi|289567521|ref|ZP_06447868.1| predicted protein [Enterococcus faecium D344SRF]
 gi|294616358|ref|ZP_06696151.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1636]
 gi|260076583|gb|EEW64347.1| predicted protein [Enterococcus faecium TC 6]
 gi|289160683|gb|EFD08636.1| predicted protein [Enterococcus faecium D344SRF]
 gi|291590872|gb|EFF22588.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1636]
          Length = 435

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 127/311 (40%), Gaps = 35/311 (11%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQ 94
           FL  + +  A +       ++  +D    ++   +  E     AS+TK++ LYI+ + ++
Sbjct: 22  FLPAVAV-QAEDTFKVNAKAAFAVDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQVK 80

Query: 95  SKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             KL  + ++ +S  A     T + S + L ++  +T ++   + I +SAN    A  E 
Sbjct: 81  EGKLSWDDKVSISDYAENLSITPDLSNVPLHKENTYTVKELFDSAIIQSANASMVALAEK 140

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAI 196
           ISGSE KF   M  + K  G+++    NASGL+              +     +A+D AI
Sbjct: 141 ISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVAI 200

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIIT-----NHNKLLNKM----HNIDGIKTGYTRN 247
           +   L  +FP+     S     +     +     N N +L         +DG+KTG T  
Sbjct: 201 VARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTEL 260

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTLKH--QQTHRK 301
           +G   V ++   D  I+ VV+           R  +   L+    +  + K   +     
Sbjct: 261 AGACFVGTITKNDQRIITVVLNADGHAENPSARFNETDRLMDYCYDNWSEKELGKANASI 320

Query: 302 DNLSSTSLKKS 312
            +L +  +K  
Sbjct: 321 PSLKTIDVKDG 331


>gi|218132847|ref|ZP_03461651.1| hypothetical protein BACPEC_00708 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991720|gb|EEC57724.1| hypothetical protein BACPEC_00708 [Bacteroides pectinophilus ATCC
           43243]
          Length = 417

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/347 (18%), Positives = 134/347 (38%), Gaps = 59/347 (17%)

Query: 21  SIYIQRNIQLMGKILFLSIIM----ISMASELHAK-----PKYSSIVIDVNKNQMTGFKQ 71
           S+  +  I +M  +L  +I       + A+   A       +Y++ +ID +  ++   K 
Sbjct: 2   SVIKRLLIVIMAALLSFTIPFQYRIYAAATRTPAALSQLYARYAA-LIDADSGRVLFEKN 60

Query: 72  DEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
                P AS TK+MT  +  E       + +  + VS  AA+    +L +K+  ++    
Sbjct: 61  GYEAAPNASTTKIMTCLLALELG-----NPDDVVTVSSYAASMPDVQLNIKKGEHYRLND 115

Query: 131 GILALITRSANDVSTAFGEFISGS----------------------EKKFAILMSNKAKK 168
            + +L+ +S ND + A  E I+ S                       + FA  M+ +A  
Sbjct: 116 LLYSLMLQSHNDSAVAIAEHIASSYLDGGSYHSDAASRSSEESRRLVQIFAAAMNERAAA 175

Query: 169 IGMQNTIYKNASGLHDKN----QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--- 221
           IG  +  +   +GL  ++       +A D A +  +  +N  ++      R + + N   
Sbjct: 176 IGCSSAHFVTPNGLDAEDENGPHSISAVDLARILAVCIQN-EEFIHITRTRNYSFNNLDN 234

Query: 222 ---RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM--GMPTSQE- 275
              R + N N  L+ M  +   KTG+T N+G+    +        V+VV+  G P ++  
Sbjct: 235 TATRSVHNTNAFLDMMDGVICGKTGFTGNAGYCYTCAYASDGRRFVSVVLACGWPGNKTY 294

Query: 276 RDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTY 322
           + +   +++              + +D        +++ +      Y
Sbjct: 295 KWKDTRKILEYA-------KASYYYRDIFVPIDDYRNICVSDGTTEY 334


>gi|125625313|ref|YP_001033796.1| DacA protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|124494121|emb|CAL99122.1| DacA protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300072127|gb|ADJ61527.1| D-alanyl-D-alanine carboxypeptidase [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 434

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 121/298 (40%), Gaps = 29/298 (9%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
              S+I ID +  ++   +   D     AS+TK++T Y++++ +   KL   T++P+S  
Sbjct: 36  AAKSAIAIDASSGKILYAQNADDASTRIASITKLLTAYLVYKNVAENKLTWTTKVPISDY 95

Query: 110 A----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           A       N S + L +   +T +  + AL+  SAN  + A  E I+GSE KF  +M+ +
Sbjct: 96  AYELTQNSNASNIPLAQNGQYTVKDLLNALLLPSANSAAIALAEKIAGSEPKFVDMMTKQ 155

Query: 166 AKKIGMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKY 211
            K  G+ ++   NASGL + +                 +A+  A L   L ++FP+  + 
Sbjct: 156 MKDWGITDSHLVNASGLPNDDLNGHIYPGSGASATNTMSAKAVATLSYHLIQDFPEVLQI 215

Query: 212 FSIRKFRY-----RNRIITNHNKLLNKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDP 262
               +  +         +TN N++L+        +DG+KTG T         +       
Sbjct: 216 TKKTEIPFDTGNEEKMTLTNTNQMLSGFSTSRTGVDGLKTGSTSFQIDCFAGTTNQNGFR 275

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKR 320
           I+ VV+        +     L    +       + T+      S    K + +   K 
Sbjct: 276 IITVVLEATDPAADNSTPFTLTNQLMNYVYGHWRTTNLVQKNQSLDDFKEIAVTDGKE 333


>gi|225552024|ref|ZP_03772964.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia sp. SV1]
 gi|225371022|gb|EEH00452.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia sp. SV1]
          Length = 405

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 81/344 (23%), Positives = 140/344 (40%), Gaps = 41/344 (11%)

Query: 27  NIQLMGKILF-LSIIMISMASELHA----------KPKYSSIVIDVNKNQMTGFKQDEPR 75
           +I ++GK+L  L +I       L A          +   S +++D +  ++   K+    
Sbjct: 3   SIYVIGKLLLTLFLIFSPFCYNLFAVNLAEINKLSEYAKSIVLMDFDTKRILYSKKPNLV 62

Query: 76  -YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQ 130
             PASLTK++T+Y      + + + L + +P+S +A    A  N S ++L++      E+
Sbjct: 63  FPPASLTKIVTIYTALIEAEKRNIKLKSIVPISDSASYYNAPPNSSLMFLEKGQIVNFEE 122

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  L   S ND S A  EF+ G+   F  LM+     +G+ N  +   SG   +N   T
Sbjct: 123 ILKGLSVSSGNDSSIAIAEFVVGNLNSFVNLMNINVLNLGLFNMHFVEPSGYSSEN-KIT 181

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYR--------------NRIITNHNKLLNKMHN 236
           A D A       + F       S++ F Y               N    N N L+     
Sbjct: 182 ALDMAFFVKSYIEKFKFMLNIHSLKYFIYPKSKNLGTALSSKFLNLKQRNANLLIYDYPY 241

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP------TSQERDQKALELITSFLEK 290
            DGIKTGY + SG N+V + +  +  ++AVV+G+         + R   A  L      +
Sbjct: 242 SDGIKTGYIKESGLNLVATAKKGERRLIAVVLGVEKGINGFGEKMRSSIAKNLFEYGFNE 301

Query: 291 KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTY----SQFKKIDA 330
            +        K+ + + +     +  K    Y     +F KI+ 
Sbjct: 302 YSKFPLIVKLKEKVYNGTADTVALFSKEPFYYILTKDEFDKINI 345


>gi|224533632|ref|ZP_03674221.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
           CA-11.2a]
 gi|225549566|ref|ZP_03770532.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
           118a]
 gi|224513305|gb|EEF83667.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
           CA-11.2a]
 gi|225369843|gb|EEG99290.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
           118a]
          Length = 405

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 74/307 (24%), Positives = 127/307 (41%), Gaps = 30/307 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             S +++D +  ++   K+      PASLTK++T+Y      + + + L + +P+S +A 
Sbjct: 40  AKSIVLMDFDTKRILYSKKPNLVFPPASLTKIVTIYTALIEAEKRNIKLKSIVPISDSAS 99

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
              A  N S ++L++      E+ +  L   S ND S A  EF+ G+   F  LM+    
Sbjct: 100 YYNAPPNSSLMFLEKGQIVNFEEILKGLSVSSGNDSSIAIAEFVVGNLNSFVNLMNINVL 159

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------- 220
            +G+ N  +   SG   +N   TA D A       + F       S++ F Y        
Sbjct: 160 NLGLFNMHFVEPSGYSSEN-KITALDMAFFVKSYIEKFKFMLNIHSLKYFIYPKSRNLGT 218

Query: 221 -------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP-- 271
                  N    N N L+      DGIKTGY + SG N+V + +  +  ++AVV+G+   
Sbjct: 219 ALSSKFLNLKQRNANLLIYDYPYSDGIKTGYIKESGLNLVATAKKGERRLIAVVLGVEKG 278

Query: 272 ----TSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTY----S 323
                 + R   A  L      K +        K+ + + ++    +  K    Y     
Sbjct: 279 INGFGEKMRSSIAKNLFEYGFNKYSKFPLIVKLKEKVYNGTVDTVALFSKEPFYYILTKD 338

Query: 324 QFKKIDA 330
           +F KI+ 
Sbjct: 339 EFDKINI 345


>gi|294623044|ref|ZP_06701933.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium U0317]
 gi|291597600|gb|EFF28762.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium U0317]
          Length = 435

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 127/311 (40%), Gaps = 35/311 (11%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQ 94
           FL  + +  A +       ++  +D    ++   +  E     AS+TK++ LYI+ + ++
Sbjct: 22  FLPAVAV-QAEDTFKVNAKAAFAVDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQVK 80

Query: 95  SKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             KL  + ++ +S  A     T + S + L ++  +T ++   + I +SAN    A  E 
Sbjct: 81  EGKLSWDDKVSISDYAENLSITPDLSNVPLHKENTYTVKELFDSAIIQSANASMVALAEK 140

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAI 196
           ISGSE KF   M  + K  G+++    NASGL+              +     +A+D AI
Sbjct: 141 ISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPEGTVENDENQMSAQDVAI 200

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIIT-----NHNKLLNKM----HNIDGIKTGYTRN 247
           +   L  +FP+     S     +     +     N N +L         +DG+KTG T  
Sbjct: 201 VARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTEL 260

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTLKH--QQTHRK 301
           +G   V ++   D  I+ VV+           R  +   L+    +  + K   +     
Sbjct: 261 AGACFVGTITKNDQRIITVVLNADGHAENPSARFNETDRLMDYCYDNWSEKELGKANASI 320

Query: 302 DNLSSTSLKKS 312
            +L +  +K  
Sbjct: 321 PSLKTIDVKDG 331


>gi|257883085|ref|ZP_05662738.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
           1,231,502]
 gi|257818743|gb|EEV46071.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
           1,231,502]
          Length = 435

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 127/311 (40%), Gaps = 35/311 (11%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQ 94
           FL  + +  A +       ++  +D    ++   +  E     AS+TK++ LYI+ + ++
Sbjct: 22  FLPAVAV-QAEDTFKVNAKAAFAVDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQVK 80

Query: 95  SKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             KL  + ++ +S  A     T + S + L ++  +T ++   + I +SAN    A  E 
Sbjct: 81  EGKLSWDDKVSISDYAENLSITPDLSNVPLHKENTYTVKELFDSAIIQSANASMVALAEK 140

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAI 196
           ISGSE KF   M  + K  G+++    NASGL+              +     +A+D AI
Sbjct: 141 ISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVAI 200

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIIT-----NHNKLLNKM----HNIDGIKTGYTRN 247
           +   L  +FP+     S     +     +     N N +L         +DG+KTG T  
Sbjct: 201 VARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTEL 260

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTLKH--QQTHRK 301
           +G   V ++   D  I+ VV+           R  +   L+    +  + K   +     
Sbjct: 261 AGACFVGTITKNDQRIITVVLNADGHAENPSARFNETDRLMDYCYDNWSEKELGKANASI 320

Query: 302 DNLSSTSLKKS 312
            +L +  +K  
Sbjct: 321 PSLKTIDVKDG 331


>gi|221194412|ref|ZP_03567469.1| D-alanyl-D-alanine carboxypeptidase [Atopobium rimae ATCC 49626]
 gi|221185316|gb|EEE17706.1| D-alanyl-D-alanine carboxypeptidase [Atopobium rimae ATCC 49626]
          Length = 381

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 127/311 (40%), Gaps = 29/311 (9%)

Query: 35  LFLSIIMISMAS-----------------ELHAKPKYSSIVIDVNKNQMTGFKQDEPRY- 76
           +FL + ++S+A                  E       S+I+ D ++  +   K  + +  
Sbjct: 1   MFLLVAVMSLAPLALGISQYAYAADDTAAEPEITEAQSAILED-DQGNVLWSKDPDRKMG 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS+TK+MT  +  +      + L+    +      +           + T  + +  L+
Sbjct: 60  MASITKVMTAMVALDSG----IDLDKPCNIVSVDLEEGSVLANYSTSEHPTLRELLQVLL 115

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             SANDV+      ++GS++ FA LM+ KA +IGM NT + N  GL   +  +TARD A+
Sbjct: 116 VHSANDVAYNIAINVAGSQEAFADLMNKKAAEIGMTNTHFSNPHGLDADDHYSTARDLAL 175

Query: 197 LGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
           +    R+++P      S+               + +KLL+    + G+KTG + +SG   
Sbjct: 176 MARYAREHYPFLASTVSMTSVTATVQGEEVTWPSTDKLLSTYPGMLGLKTG-SEDSGTAF 234

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           + + R     + + V+G  T   R      +        T +    +  + + +     +
Sbjct: 235 LGAARRNGVTLYSCVLGCATDSGRFADTRIMYDWGYAHFT-RIPACNVSNIVETRPYIDN 293

Query: 313 LMIKKLKRTYS 323
            M+  + R Y+
Sbjct: 294 FMMTSVVRPYA 304


>gi|312875038|ref|ZP_07735056.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF
           2053A-b]
 gi|311089433|gb|EFQ47859.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF
           2053A-b]
          Length = 425

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 64/287 (22%), Positives = 115/287 (40%), Gaps = 33/287 (11%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKL 98
           I  + A +  A    ++I+ D+   Q+   K  + + P AS++K++T+Y+  + + + K+
Sbjct: 49  ICDNYAQDNLALNAKAAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAINAGKI 108

Query: 99  HLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
              T++  S+ A         S + L+    +T +Q   A + +SAN  +      ++GS
Sbjct: 109 SWQTKVMPSREAIAVSKNPEYSNVPLQLGHQYTIKQLYQATLIQSANGAAMVLASAVAGS 168

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAILGIL 200
            KKF  +M  +     +        SGL               D     +A D  IL   
Sbjct: 169 SKKFVGMMRKQLLDWHISQAQIVTPSGLPNFTLGRDADSTKNADAENELSASDMGILIKH 228

Query: 201 LRKNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKM------HNIDGIKTGYTRNSGF 250
           L   FPQ      I K  +        + N N +L  +      + +DG+KTG T  +G 
Sbjct: 229 LLLEFPQVLDTTRISKLNFPDGHNTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGA 288

Query: 251 NIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTL 293
            + ++L      IV V++G          R  +  +L   F    +L
Sbjct: 289 CLASTLVKNGRRIVTVIIGARHLNGNDPARFVETKKLYAYFYNNYSL 335


>gi|293553827|ref|ZP_06674442.1| D-alanyl-D-alanine carboxypeptidase DacA [Enterococcus faecium
           E1039]
 gi|291602033|gb|EFF32270.1| D-alanyl-D-alanine carboxypeptidase DacA [Enterococcus faecium
           E1039]
          Length = 435

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 127/311 (40%), Gaps = 35/311 (11%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQ 94
           FL  + +  A +       ++  +D    ++   +  E     AS+TK++ LYI+ + ++
Sbjct: 22  FLPAVAV-QAEDTFKVNAKAAFAVDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQVK 80

Query: 95  SKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             KL  + ++ +S  A     T + S + L ++  +T ++   + I +SAN    A  E 
Sbjct: 81  EGKLSWDDKVSISDYAENLSITPDLSNVPLHKENTYTVKELFDSAIIQSANASMVALAEK 140

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAI 196
           ISGSE KF   M  + K  G+++    NASGL+              +     +A+D AI
Sbjct: 141 ISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVAI 200

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIIT-----NHNKLLNKM----HNIDGIKTGYTRN 247
           +   L  +FP+     S     +     +     N N +L         +DG+KTG T  
Sbjct: 201 VARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTEL 260

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTLKH--QQTHRK 301
           +G   V ++   D  I+ VV+           R  +   L+    +  + K   +     
Sbjct: 261 AGACFVGTITKNDQRIITVVLNADGHAENPSARFNETDRLMDYCYDNWSEKELGKANASI 320

Query: 302 DNLSSTSLKKS 312
            +L +  +K  
Sbjct: 321 PSLKTIDVKDG 331


>gi|294620209|ref|ZP_06699543.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1679]
 gi|314940169|ref|ZP_07847347.1| beta-lactamase [Enterococcus faecium TX0133a04]
 gi|314942414|ref|ZP_07849257.1| beta-lactamase [Enterococcus faecium TX0133C]
 gi|314952310|ref|ZP_07855321.1| beta-lactamase [Enterococcus faecium TX0133A]
 gi|314994247|ref|ZP_07859550.1| beta-lactamase [Enterococcus faecium TX0133B]
 gi|314997162|ref|ZP_07862148.1| beta-lactamase [Enterococcus faecium TX0133a01]
 gi|291593562|gb|EFF25102.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1679]
 gi|313588736|gb|EFR67581.1| beta-lactamase [Enterococcus faecium TX0133a01]
 gi|313591334|gb|EFR70179.1| beta-lactamase [Enterococcus faecium TX0133B]
 gi|313595569|gb|EFR74414.1| beta-lactamase [Enterococcus faecium TX0133A]
 gi|313598814|gb|EFR77659.1| beta-lactamase [Enterococcus faecium TX0133C]
 gi|313640608|gb|EFS05188.1| beta-lactamase [Enterococcus faecium TX0133a04]
          Length = 435

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 127/311 (40%), Gaps = 35/311 (11%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQ 94
           FL  + +  A +       ++  +D    ++   +  E     AS+TK++ LYI+ + ++
Sbjct: 22  FLPAVAV-QAEDTFKVNAKAAFAVDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQVK 80

Query: 95  SKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             KL  + ++ +S  A     T + S + L ++  +T ++   + I +SAN    A  E 
Sbjct: 81  EGKLSWDDKVSISDYAENLSITPDLSNVPLHKENTYTVKELFDSAIIQSANASMVALAEK 140

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAI 196
           ISGSE KF   M  + K  G+++    NASGL+              +     +A+D AI
Sbjct: 141 ISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVAI 200

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIIT-----NHNKLLNKM----HNIDGIKTGYTRN 247
           +   L  +FP+     S     +     +     N N +L         +DG+KTG T  
Sbjct: 201 VARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTEL 260

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTLKH--QQTHRK 301
           +G   V ++   D  I+ VV+           R  +   L+    +  + K   +     
Sbjct: 261 AGACFVGTITKNDQRIITVVLNADGHAENPSARFNETDRLMDYCYDNWSEKELGKANASI 320

Query: 302 DNLSSTSLKKS 312
            +L +  +K  
Sbjct: 321 PSLKTIDVKDG 331


>gi|158317707|ref|YP_001510215.1| Serine-type D-Ala-D-Ala carboxypeptidase [Frankia sp. EAN1pec]
 gi|158113112|gb|ABW15309.1| Serine-type D-Ala-D-Ala carboxypeptidase [Frankia sp. EAN1pec]
          Length = 465

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 94/242 (38%), Gaps = 15/242 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + +V D     +        P  PAS  KM+T   +        L  + ++ +S  AA
Sbjct: 9   AEAWLVADAGSGAILAAHNAHLPDLPASTMKMLTALTVL----PG-LPPDREVTISDQAA 63

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + +++ L     +T      A++  S ND + A  E  +G  +     M+  A  +G 
Sbjct: 64  QVDGTRVGLVPGVRYTVRDLATAMLIASGNDATVALVEA-AGGREAVLDRMNRLAASLGA 122

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITN 226
             T+  + +GL    Q TTA D A++G     + P    Y +I +     R      I N
Sbjct: 123 SETVAGDPTGLDAPGQHTTAHDLAVIGRATLND-PIVRGYLTIPRASLPGRGDERFEIAN 181

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           HN L+       GIK GYT  +G   V +    D  ++  ++   T+      A  L+  
Sbjct: 182 HNTLIGSYEGTIGIKNGYTVAAGATFVGAATRNDRTLIVSLL--RTAPAYGTDARALLDW 239

Query: 287 FL 288
             
Sbjct: 240 GF 241


>gi|125973746|ref|YP_001037656.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           ATCC 27405]
 gi|256005750|ref|ZP_05430704.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           thermocellum DSM 2360]
 gi|281417903|ref|ZP_06248923.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           thermocellum JW20]
 gi|125713971|gb|ABN52463.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
           ATCC 27405]
 gi|255990284|gb|EEU00412.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           thermocellum DSM 2360]
 gi|281409305|gb|EFB39563.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           thermocellum JW20]
 gi|316940059|gb|ADU74093.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           thermocellum DSM 1313]
          Length = 432

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 71/277 (25%), Positives = 117/277 (42%), Gaps = 35/277 (12%)

Query: 47  ELHAKP----KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLN 101
            L A+P      + I+ID    Q+      + R YPAS TK+MT  +  E        LN
Sbjct: 20  TLKAQPLDINAQAYILIDSKTGQVLAEHNPDLRTYPASTTKIMTAILALELGD-----LN 74

Query: 102 TQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
             + VS++A          + L           + AL+ RSAN+ +    E +  S ++F
Sbjct: 75  QIMTVSQSAIDDIGPGGMHIGLLPGEQLELRYLLDALLVRSANETAYVIAENLCSSREEF 134

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHD----KNQITTARDQAILGILLRKNFPQYYKYFSI 214
             LM+ KA+++G  NT + N  G+ +    KN +TTARD A +        P++ +    
Sbjct: 135 YRLMNEKARELGATNTNFVNPCGIDNGEKGKNHLTTARDLAKIAQYAM-TIPEFREIVQK 193

Query: 215 RKFRYRNR-------IITNHNKLL---------NKMHNIDGIKTGYTRNSGFNIVTSLRY 258
              +           I+   NKLL              I GIKTGYT  +  N+V+S   
Sbjct: 194 TIIKIPPTNKHAEEVIVGTTNKLLLYSNSKYKSEHYTKITGIKTGYTDRALNNLVSSAVN 253

Query: 259 K-DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
                ++AVV+G+       + +  L+    +  +++
Sbjct: 254 DEGTELIAVVLGVENYDMVFEYSKMLLEYGFKNYSVQ 290


>gi|320354992|ref|YP_004196331.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Desulfobulbus
           propionicus DSM 2032]
 gi|320123494|gb|ADW19040.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Desulfobulbus
           propionicus DSM 2032]
          Length = 422

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 83/281 (29%), Positives = 128/281 (45%), Gaps = 22/281 (7%)

Query: 37  LSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEY 92
           +SI  ++       + + S+   +V+D    +    K  D PR PAS  K++T  I  + 
Sbjct: 159 VSISPVAAGDLAPIEKQISARSVMVMDAESGESLFEKMADNPRQPASTIKIVTAMIALKS 218

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           L++     +  I VS+ AA    SK++L     +     I A++  SAND S A  E I+
Sbjct: 219 LRN-----DDVINVSRRAADMPSSKIFLDPNRNYQANDLINAVLLASANDASVALAEKIA 273

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           GSE KFA LM+  AK  G +NTI + ASGL    Q +TARD A L     +   ++ +  
Sbjct: 274 GSEDKFATLMTLSAKMWGAKNTICRTASGLTADGQQSTARDLANLFRFAMQ-HDEFSRRM 332

Query: 213 SIRKF-RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
             R       + + NHNK L ++    G KTGYT  +    V     +   IV  +MG  
Sbjct: 333 RERSICTSYGKTLRNHNKALWRLDGAVGGKTGYTIAARQTYVGQFSREGQTIVVAIMGSE 392

Query: 272 TSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           +         +L+     +K        +++ L+  SL KS
Sbjct: 393 SM---WADLEKLVDYGFRRK--------KQEQLAQVSLTKS 422


>gi|216264541|ref|ZP_03436533.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
           156a]
 gi|224532771|ref|ZP_03673388.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
           WI91-23]
 gi|226320832|ref|ZP_03796385.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
           29805]
 gi|215981014|gb|EEC21821.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
           156a]
 gi|224512389|gb|EEF82773.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
           WI91-23]
 gi|226233774|gb|EEH32502.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
           29805]
          Length = 405

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 74/307 (24%), Positives = 127/307 (41%), Gaps = 30/307 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             S +++D +  ++   K+      PASLTK++T+Y      + + + L + +P+S +A 
Sbjct: 40  AKSIVLMDFDTKRILYSKKPNLVFPPASLTKIVTIYTALIEAEKRNIKLKSIVPISDSAS 99

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
              A  N S ++L++      E+ +  L   S ND S A  EF+ G+   F  LM+    
Sbjct: 100 YYNAPPNSSLMFLEKGQIVNFEEILKGLSVSSGNDSSIAIAEFVVGNLNSFVNLMNINVL 159

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------- 220
            +G+ N  +   SG   +N   TA D A       + F       S++ F Y        
Sbjct: 160 NLGLFNMHFVEPSGYSSEN-KITALDMAFFVKSYIEKFKFMLNIHSLKYFIYPKSRNLGT 218

Query: 221 -------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP-- 271
                  N    N N L+      DGIKTGY + SG N+V + +  +  ++AVV+G+   
Sbjct: 219 ALSSKFLNLKQRNANLLIYDYPYSDGIKTGYIKESGLNLVATAKKGERRLIAVVLGVEKG 278

Query: 272 ----TSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTY----S 323
                 + R   A  L      K +        K+ + + ++    +  K    Y     
Sbjct: 279 INGFGEKMRSSIAKNLFEYGFNKYSKFPLIVKLKEKVYNGTVDTVALFSKEPFYYILTKD 338

Query: 324 QFKKIDA 330
           +F KI+ 
Sbjct: 339 EFDKINI 345


>gi|296390777|ref|ZP_06880252.1| D-alanyl-D-alanine endopeptidase [Pseudomonas aeruginosa PAb1]
          Length = 310

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 125/283 (44%), Gaps = 31/283 (10%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKY-----------SSIVIDVNKNQMTGFKQDEP 74
           RN  L    LFLS+  ++ A      PK            S++V D N  ++   +  + 
Sbjct: 2   RNRLLSLVTLFLSLS-VATAVSASPPPKAGLPLQQELASGSALVTDQNTGKVLYSRNPDL 60

Query: 75  RYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPV--SKTAATQN-PSKLYLKEKTYFTTEQ 130
             P AS+TK+MT  ++ +     KL L+  +P+  S+T+  +   S++  +  +  +   
Sbjct: 61  VVPIASITKLMTAMVVLDS----KLPLDEVLPIAISETSEMRGVFSRV--RVGSQISRRD 114

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +L  +  S N  + +  +   G +  F   M+ KA  +GM+NT Y   +GL   N ++T
Sbjct: 115 MLLLALMSSENRAAASLAQNYPGGKNAFVKAMNAKAHALGMKNTRYVEPTGLSLHN-VST 173

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRII--TNHNKLL-NKMHNIDGIKTG 243
           ARD   L ++  + +P   ++ +  +    FR+ N  +   N N L+ NK  NI   KTG
Sbjct: 174 ARDLTRL-LVASRQYPLLSQWSTTPEKTVAFRHPNYTLGFRNTNHLINNKTWNIQLTKTG 232

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           +T  +G  +V       +P+  VV+           A  L   
Sbjct: 233 FTNEAGHCLVMRTTINRNPVNLVVLDAFGKYTHFADATRLRRW 275


>gi|255311369|ref|ZP_05353939.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis 6276]
 gi|255317670|ref|ZP_05358916.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis 6276s]
 gi|296436084|gb|ADH18258.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis G/9768]
 gi|296437012|gb|ADH19182.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis G/11222]
 gi|296437945|gb|ADH20106.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis G/11074]
 gi|297140445|gb|ADH97203.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis G/9301]
 gi|297748681|gb|ADI51227.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis D-EC]
 gi|297749561|gb|ADI52239.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis D-LC]
          Length = 437

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 62/296 (20%), Positives = 119/296 (40%), Gaps = 37/296 (12%)

Query: 35  LFLSIIMISMASELHAKPK------YSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLY 87
            F+ +    ++  L+A P        ++ V+  +   +   K  D   +PAS+TK+ T  
Sbjct: 10  FFICLAPFFLSFPLYADPHTVLTKGIAAAVVHADSGAILKEKNLDHKIFPASMTKIATAL 69

Query: 88  IIFEY--------LQSKKLHLNTQIPVSK---------TAATQNPSKLYLKEKTYFTTEQ 130
           +I           + +++  L +  P +K              +   + LK K   +   
Sbjct: 70  LILRQYPDVLTRFITTRREPLTSITPQAKQQSGYRSPPHWLETDGMTIQLKVKEEVSGWD 129

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
              AL+  SAND +    +    S   F   ++   +++G QNT + +  GLH  +  TT
Sbjct: 130 LFHALLISSANDAANVLADACCQSVSAFMRQLNEFLRELGCQNTHFNSPHGLHHPDHYTT 189

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLLNK-----MHNIDG 239
           ARD +++     K  P + +      +          R++++ NKLL+           G
Sbjct: 190 ARDLSLIMKEALKE-PLFRQVIHTASYTMEATNLSPERVLSSTNKLLSSSSTYFYPPCLG 248

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-DQKALELITSFLEKKTLK 294
            KTG T+++G NI+ +    +  I+ V  G      +  Q A+ L      ++ L+
Sbjct: 249 GKTGTTKSAGKNIIFAAEKNNRSIIVVAAGYFGPAAQLYQDAIALCEDLFNEQLLR 304


>gi|15605280|ref|NP_220066.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
           D/UW-3/CX]
 gi|3328991|gb|AAC68153.1| D-Ala-D-Ala Carboxypeptidase [Chlamydia trachomatis D/UW-3/CX]
          Length = 343

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 62/296 (20%), Positives = 119/296 (40%), Gaps = 37/296 (12%)

Query: 35  LFLSIIMISMASELHAKPK------YSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLY 87
            F+ +    ++  L+A P        ++ V+  +   +   K  D   +PAS+TK+ T  
Sbjct: 10  FFICLAPFFLSFPLYADPHTVLTKGIAAAVVHADSGAILKEKNLDHKIFPASMTKIATAL 69

Query: 88  IIFEY--------LQSKKLHLNTQIPVSK---------TAATQNPSKLYLKEKTYFTTEQ 130
           +I           + +++  L +  P +K              +   + LK K   +   
Sbjct: 70  LILRQYPDVLTRFITTRREPLTSITPQAKQQSGYRSPPHWLETDGMTIQLKVKEEVSGWD 129

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
              AL+  SAND +    +    S   F   ++   +++G QNT + +  GLH  +  TT
Sbjct: 130 LFHALLISSANDAANVLADACCQSVSAFMRQLNEFLRELGCQNTHFNSPHGLHHPDHYTT 189

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLLNK-----MHNIDG 239
           ARD +++     K  P + +      +          R++++ NKLL+           G
Sbjct: 190 ARDLSLIMKEALKE-PLFRQVIHTASYTMEATNLSPERVLSSTNKLLSSSSTYFYPPCLG 248

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-DQKALELITSFLEKKTLK 294
            KTG T+++G NI+ +    +  I+ V  G      +  Q A+ L      ++ L+
Sbjct: 249 GKTGTTKSAGKNIIFAAEKNNRSIIVVAAGYFGPAAQLYQDAIALCEDLFNEQLLR 304


>gi|225548661|ref|ZP_03769708.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 94a]
 gi|225370691|gb|EEH00127.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 94a]
          Length = 405

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 74/307 (24%), Positives = 127/307 (41%), Gaps = 30/307 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             S +++D +  ++   K+      PASLTK++T+Y      + + + L + +P+S +A 
Sbjct: 40  AKSIVLMDFDTKRILYSKKPNLVFPPASLTKIVTIYTALIEAEKRNIKLKSIVPISDSAS 99

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
              A  N S ++L++      E+ +  L   S ND S A  EF+ G+   F  LM+    
Sbjct: 100 YYNAPPNSSLMFLEKGQIVNFEEILKGLSVSSGNDSSIAIAEFVVGNLNSFVNLMNINVL 159

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------- 220
            +G+ N  +   SG   +N   TA D A       + F       S++ F Y        
Sbjct: 160 NLGLFNMHFVEPSGYSSEN-KITALDMAFFVKSYIEKFKFMLNIHSLKYFIYPKSRNLGT 218

Query: 221 -------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP-- 271
                  N    N N L+      DGIKTGY + SG N+V + +  +  ++AVV+G+   
Sbjct: 219 ALSSKFLNLKQRNANLLIYDYPYSDGIKTGYIKESGLNLVATAKKGERRLIAVVLGVEKG 278

Query: 272 ----TSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTY----S 323
                 + R   A  L      K +        K+ + + ++    +  K    Y     
Sbjct: 279 INGFGEKMRSSIAKNLFEYGFNKYSKFPLIVKLKEKVYNGTVDTVALFSKEPFYYILTKD 338

Query: 324 QFKKIDA 330
           +F KI+ 
Sbjct: 339 EFDKINI 345


>gi|283797579|ref|ZP_06346732.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
 gi|291074687|gb|EFE12051.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
          Length = 569

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 77/330 (23%), Positives = 140/330 (42%), Gaps = 43/330 (13%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSS--------------IVIDVNKNQMTGFKQDEPRY 76
           M +    +I+   + + + A P Y+S              IV+D +   +   K     Y
Sbjct: 1   MKQKFIRTILCFFLTAAVSAHPAYASQEWPSDVSIEADAGIVMDADSGTVLYGKNIHDTY 60

Query: 77  -PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGI 132
            PAS+TK++T  I+ E        L+  +  SK A      + S          T    +
Sbjct: 61  SPASITKVLTSIIVLENCD-----LDEMVTFSKNAIYNVEADSSSAGYDTGDQATVRDCL 115

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
            AL+ +SAN+ + A  E ++G+ + FA +M+ KAK++G  ++ + N SGL+D+N   +A 
Sbjct: 116 YALLLKSANEAANALAEHVAGTTEAFAEMMNEKAKELGCVDSHFANPSGLNDENHYVSAY 175

Query: 193 DQAILGILLRKNFPQYYKYFSIRKF-------RYRNRIITNHNKLLNKM-----HNIDGI 240
           D A++     +N   + +  S   +             ++  NKL+ K       ++ G 
Sbjct: 176 DMALITRYAFENEI-FEEIISTTYYELPPNARNPEGLGVSPGNKLIKKNFPEYRPDVIGG 234

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP-TSQERDQKALELITSFLEKKTLKHQQTH 299
           KTGYT  +   +VT  R  D  ++ VV+    T+     + L+         +L++  T 
Sbjct: 235 KTGYTSIALNTLVTGARQDDTTLITVVLHSRGTTYSDTSRMLDFGFGNFRSVSLENNDTT 294

Query: 300 RKDNLSSTSLKKSLMIKKLKRTYSQFKKID 329
                  +SL  +L I  L  + +    +D
Sbjct: 295 Y------SSLNSNLTIAGLPTSSAPSLTVD 318


>gi|225403123|ref|ZP_03760420.1| hypothetical protein CLOSTASPAR_04451 [Clostridium asparagiforme
           DSM 15981]
 gi|225043241|gb|EEG53487.1| hypothetical protein CLOSTASPAR_04451 [Clostridium asparagiforme
           DSM 15981]
          Length = 492

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/256 (21%), Positives = 108/256 (42%), Gaps = 27/256 (10%)

Query: 53  KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + IV+D +   +   +    P  PAS+TK++T  ++ E  +     L+  +  S++A 
Sbjct: 39  AEAGIVMDQDSGAVLFGQNIHLPFAPASITKLLTALVVIENSK-----LDDMVTFSQSAV 93

Query: 112 ----TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
               + + +KL+++     + E  +  L+  S+N  + A  E ++GS + F  +M+++ K
Sbjct: 94  YDVESGSGNKLHMETGDELSVEDCLYMLLLLSSNQAANALAEHVAGSREAFVEMMNDRIK 153

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-------R 220
           +IG   + + N SGL+D NQ  +A D A++      N     K  S + +          
Sbjct: 154 EIGCTESHFANPSGLNDDNQYVSAYDMALIAREAFNN-ETLLKIDSSKSYSIGATANNPN 212

Query: 221 NRIITNHNKLL--------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
                  ++L+                 KTGYT  +G  +VT        ++AVV+    
Sbjct: 213 GASFNMEHRLIMAEDTSSQYYCEGTMAGKTGYTSIAGNTLVTLTERDGRRLIAVVLKGTQ 272

Query: 273 SQERDQKALELITSFL 288
            Q     +  L+    
Sbjct: 273 PQY-YLDSKSLLEFGF 287


>gi|15835453|ref|NP_297212.1| D-alanyl-D-alanine carboxypeptidase, putative [Chlamydia muridarum
           Nigg]
 gi|7190867|gb|AAF39639.1| D-alanyl-D-alanine carboxypeptidase, putative [Chlamydia muridarum
           Nigg]
          Length = 438

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/339 (21%), Positives = 130/339 (38%), Gaps = 43/339 (12%)

Query: 26  RNIQLMGKILFLSI-IMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPA 78
           R + L+ +    S  + +  AS L A P       ++ V+  +   +   K  D+  +PA
Sbjct: 2   RILSLLCRFFICSSPLFLQPASLLAASPAITTKGLAAAVMHADSGAILKEKNLDQKIFPA 61

Query: 79  SLTKMMTLYIIFEYLQS--------KKLHLNTQIPVSKTAATQNPSK------------L 118
           S+TK+ T  +I              ++  L +   ++  A  Q+  +            +
Sbjct: 62  SMTKIATALLILRKHPDVLTRFITIRREPLTS---ITPQAKQQSGYRSPPHWLETDGVAI 118

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            LK K   +      AL+  SAND +    +    S   F   +++  K+IG QNT + +
Sbjct: 119 QLKSKEEVSGWDLFHALLISSANDAANVLADACCQSVPAFMHQLNDFLKEIGCQNTHFNS 178

Query: 179 ASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLLN 232
             GLH  +  TTARD AI+     K  P + +      +          R +++ N+LL+
Sbjct: 179 PHGLHHPDHYTTARDLAIIMKEALKE-PLFCQVIRTASYTMESTNLSPERTLSSTNRLLS 237

Query: 233 K-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-DQKALELITS 286
                      G KTG T+++G NIV +    +  I+ V  G      +  Q A+ +   
Sbjct: 238 SSSTYFYPPCLGGKTGTTKSAGKNIVFAAEKNNRSIIVVAAGYFGPAAQLYQDAIAVCED 297

Query: 287 FLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQF 325
              ++ L+          S  +    +     +  Y  F
Sbjct: 298 LFNEQLLRCFLLPPASQYSVKTKFGPITAPVSQGIYYDF 336


>gi|295089928|emb|CBK76035.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cf.
           saccharolyticum K10]
          Length = 569

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 77/330 (23%), Positives = 140/330 (42%), Gaps = 43/330 (13%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSS--------------IVIDVNKNQMTGFKQDEPRY 76
           M +    +I+   + + + A P Y+S              IV+D +   +   K     Y
Sbjct: 1   MKQKFIRTILCFFLTAAVSAHPAYASQEWPSDVSIEADAGIVMDADSGTVLYGKNIHDTY 60

Query: 77  -PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGI 132
            PAS+TK++T  I+ E        L+  +  SK A      + S          T    +
Sbjct: 61  SPASITKVLTSIIVLENCD-----LDEMVTFSKNAVYNVEADSSSAGYDTGDQATVRDCL 115

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
            AL+ +SAN+ + A  E ++G+ + FA +M+ KAK++G  ++ + N SGL+D+N   +A 
Sbjct: 116 YALLLKSANEAANALAEHVAGTTEAFAEMMNEKAKELGCVDSHFANPSGLNDENHYVSAY 175

Query: 193 DQAILGILLRKNFPQYYKYFSIRKF-------RYRNRIITNHNKLLNKM-----HNIDGI 240
           D A++     +N   + +  S   +             ++  NKL+ K       ++ G 
Sbjct: 176 DMALITRYAFENEI-FEEIISTTYYELPPNARNPEGLGVSPGNKLIKKNFPEYRPDVIGG 234

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP-TSQERDQKALELITSFLEKKTLKHQQTH 299
           KTGYT  +   +VT  R  D  ++ VV+    T+     + L+         +L++  T 
Sbjct: 235 KTGYTSIALNTLVTGARQDDTTLITVVLHSRGTTYSDTSRMLDFGFGNFRSVSLENNDTT 294

Query: 300 RKDNLSSTSLKKSLMIKKLKRTYSQFKKID 329
                  +SL  +L I  L  + +    +D
Sbjct: 295 Y------SSLNSNLTIAGLPTSSAPSLTVD 318


>gi|168180079|ref|ZP_02614743.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum NCTC 2916]
 gi|226948683|ref|YP_002803774.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A2 str. Kyoto]
 gi|182669152|gb|EDT81128.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum NCTC 2916]
 gi|226843155|gb|ACO85821.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A2 str. Kyoto]
          Length = 424

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 88/318 (27%), Positives = 133/318 (41%), Gaps = 37/318 (11%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           I L+  IL L+  + +        P     +++ IDV   ++   K  D+  YPAS TK 
Sbjct: 9   ISLLIFILTLTSNVFAAGDSNTEPPTIYGKTAMTIDVETGEIIYAKNIDKRMYPASTTKY 68

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-----YLKEKTYFTTEQGILALITR 138
           +T  ++ E     K   N  IP + TA +Q    L      +        E  +  L+  
Sbjct: 69  LTALLLAEN--KGK---NDNIPYTATAKSQPQYSLNINLHPIDIGETIKAENVMDGLLLF 123

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S NDV+   G+ ++G+ K F  +M+ K +++ ++NT +   +GLH+ N  TTA D +++ 
Sbjct: 124 SGNDVAYMIGDALAGNNKNFENMMNKKIQELNLKNTHFVTPNGLHNPNHYTTAYDLSVIS 183

Query: 199 ILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
               KN P  Y     K  SI   +     I N NKLL K       KTGYT  +G  +V
Sbjct: 184 RAALKN-PWVYQSSNKKESSIVTSKGTKMAIENSNKLLGK-DGCVAGKTGYTDAAGRCLV 241

Query: 254 TSLRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKKTLKHQQTHRKDNLSSTSLK 310
           T        I+ VVMG     +     Q   ++I      K              ST  K
Sbjct: 242 TLFNRDGRKILGVVMGSVYDAKDSFVFQDMKKIIDWSYNVK-------------PSTLYK 288

Query: 311 KSLMIKKLKRTYSQFKKI 328
           K   +K    TY+  K I
Sbjct: 289 KDSSLKTETVTYNPLKII 306


>gi|15594950|ref|NP_212739.1| serine-type D-Ala-D-Ala carboxypeptidase (dacA) [Borrelia
           burgdorferi B31]
 gi|2688537|gb|AAC66969.1| serine-type D-Ala-D-Ala carboxypeptidase (dacA) [Borrelia
           burgdorferi B31]
          Length = 405

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 75/307 (24%), Positives = 127/307 (41%), Gaps = 30/307 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             S ++ID +  ++   K+      PASLTK++T+Y      + + + L + +P+S +A 
Sbjct: 40  AKSIVLIDFDTKRILYSKKPNLVFPPASLTKIVTIYTALIEAEKRNIKLKSIVPISDSAS 99

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
              A  N S ++L++      E+ +  L   S ND S A  EF+ G+   F  LM+    
Sbjct: 100 YYNAPPNSSLMFLEKGQIVNFEEILKGLSVSSGNDSSIAIAEFVVGNLNSFVNLMNINVL 159

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------- 220
            +G+ N  +   SG   +N   TA D A       + F       S++ F Y        
Sbjct: 160 NLGLFNMHFVEPSGYSSEN-KITALDMAFFVKSYIEKFKFMLNIHSLKYFIYPKSRNLGT 218

Query: 221 -------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP-- 271
                  N    N N L+      DGIKTGY + SG N+V + +  +  ++AVV+G+   
Sbjct: 219 ALSSKFLNLKQRNANLLIYDYPYSDGIKTGYIKESGLNLVATAKKGERRLIAVVLGVEKG 278

Query: 272 ----TSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTY----S 323
                 + R   A  L      K +        K+ + + ++    +  K    Y     
Sbjct: 279 INGFGEKMRSSIAKNLFEYGFNKYSKFPLIVKLKEKVYNGTVDTVALFSKEPFYYILTKD 338

Query: 324 QFKKIDA 330
           +F KI+ 
Sbjct: 339 EFDKINI 345


>gi|312873554|ref|ZP_07733601.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF
           2052A-d]
 gi|311090807|gb|EFQ49204.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF
           2052A-d]
          Length = 385

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/338 (21%), Positives = 132/338 (39%), Gaps = 41/338 (12%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKL 98
           I  + A +  A    ++I+ D+   Q+   K    + P AS++K++T+Y+  + +++ KL
Sbjct: 9   ICDNYAQDNLALNAKAAIIYDLKSGQIMYAKNITQKLPVASMSKLLTIYLTLKAIKAGKL 68

Query: 99  HLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
              T++  S+ A         S + L+    +T  Q   A + +SAN  +      ++GS
Sbjct: 69  SWQTKVMPSREAIAVSKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGS 128

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAILGIL 200
            KKF  +M  +     +        SGL               D     +A D  IL   
Sbjct: 129 SKKFVGMMRKQLLDWHISQAQIVTPSGLPNFTLGRDADSTKNADAENELSASDMGILIKH 188

Query: 201 LRKNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKM------HNIDGIKTGYTRNSGF 250
           L   FPQ      I K  +        + N N +L  +      + +DG+KTG T  +G 
Sbjct: 189 LLLEFPQVLDTTRISKLNFPDGHNTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGA 248

Query: 251 NIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTL--------KHQQT 298
            + ++L      IV V++G          R  +  +L   F    +L           +T
Sbjct: 249 CLASTLVKNGRRIVTVIIGARHLNGNDPARFVETKKLYAYFYNNYSLHIYKRWTQFPGKT 308

Query: 299 HRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
             K   S  +  ++ + +      S+ +K+DA+    +
Sbjct: 309 LIKVKNSPINEVRACLYQDTGIWISKGQKLDAELSMNK 346


>gi|295115036|emb|CBL35883.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
           SM4/1]
          Length = 569

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 77/330 (23%), Positives = 140/330 (42%), Gaps = 43/330 (13%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSS--------------IVIDVNKNQMTGFKQDEPRY 76
           M +    +I+   + + + A P Y+S              IV+D +   +   K     Y
Sbjct: 1   MKQKFIRTILCFFLTAAVSAHPAYASQEWPSDVSIEADAGIVMDADSGTVLYGKNIHDTY 60

Query: 77  -PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGI 132
            PAS+TK++T  I+ E        L+  +  SK A      + S          T    +
Sbjct: 61  SPASITKVLTSIIVLENCD-----LDEMVTFSKNAVYNVEADSSSAGYDTGDQATVRDCL 115

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
            AL+ +SAN+ + A  E ++G+ + FA +M+ KAK++G  ++ + N SGL+D+N   +A 
Sbjct: 116 YALLLKSANEAANALAEHVAGTTEAFAEMMNEKAKELGCVDSHFANPSGLNDENHYVSAY 175

Query: 193 DQAILGILLRKNFPQYYKYFSIRKF-------RYRNRIITNHNKLLNKM-----HNIDGI 240
           D A++     +N   + +  S   +             ++  NKL+ K       ++ G 
Sbjct: 176 DMALITRYAFENEI-FEEIISTTYYELPPNARNPEGLGVSPGNKLIKKNFPEYRPDVIGG 234

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP-TSQERDQKALELITSFLEKKTLKHQQTH 299
           KTGYT  +   +VT  R  D  ++ VV+    T+     + L+         +L++  T 
Sbjct: 235 KTGYTSIALNTLVTGARQDDTTLITVVLHSRGTTYSDTSRMLDFGFGNFRSVSLENNDTT 294

Query: 300 RKDNLSSTSLKKSLMIKKLKRTYSQFKKID 329
                  +SL  +L I  L  + +    +D
Sbjct: 295 Y------SSLNSNLTIAGLPTSSAPSLTVD 318


>gi|302190851|ref|ZP_07267105.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus iners AB-1]
          Length = 425

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 64/287 (22%), Positives = 114/287 (39%), Gaps = 33/287 (11%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKL 98
           I  + A +  A    ++I+ D+   Q+   K  + + P AS++K++T+Y+  + + + K+
Sbjct: 49  ICDNYAQDNLALNAKAAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAINAGKI 108

Query: 99  HLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
              T++  S+ A         S + L+    +T  Q   A + +SAN  +      ++GS
Sbjct: 109 SWQTKVMPSREAIAVSKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGS 168

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAILGIL 200
            KKF  +M  +     +        SGL               D     +A D  IL   
Sbjct: 169 SKKFVGMMRKQLLDWHISQAQIVTPSGLPNFTLGRDADSNKNADAENELSASDIGILIKH 228

Query: 201 LRKNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKM------HNIDGIKTGYTRNSGF 250
           L   FPQ      I K  +        + N N +L  +      + +DG+KTG T  +G 
Sbjct: 229 LLLEFPQVLDTTRISKLNFPDGHNTFKMVNWNLMLKGLSQYNEAYPVDGLKTGTTDAAGA 288

Query: 251 NIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTL 293
            + ++L      IV V++G          R  +  +L   F    +L
Sbjct: 289 CLASTLVKNGRRIVTVIIGARHLNGNDPARFVETKKLYAYFYNNYSL 335


>gi|145490887|ref|XP_001431443.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398548|emb|CAK64045.1| unnamed protein product [Paramecium tetraurelia]
          Length = 302

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/271 (25%), Positives = 120/271 (44%), Gaps = 31/271 (11%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKL-HLN 101
           +A  + AK   S I++D     +     +++ R  AS+TK+MT Y++    ++  +   N
Sbjct: 37  LAPRITAK---SWIIVDSQSGDVLYSFNENQKREIASITKIMTFYVVLNMCRTMNVQTNN 93

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF----------I 151
           T   VS  A++   +   L +    + E     L+  S ND + A  E           I
Sbjct: 94  TYAEVSFQASSVGGTTADLLKGDVVSIEDLFYGLMLPSGNDAAMALAENFGIYAMYQNKI 153

Query: 152 SGSEK--KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            G      F   M+NKA+++ M  T Y N  GL++KN +++A D A L   L K+  +++
Sbjct: 154 KGKNPLIYFIQEMNNKARELRMSQTTYANPHGLNNKNNVSSAYDVAKLCNQLLKD--EFF 211

Query: 210 KYFSIRKFRY----------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           +     K  +          R+ I  N NKLL       GIKTG T  +G  + +  +  
Sbjct: 212 RKVVNTKVHFSTIQDEEGFTRDVIWENTNKLL--YQGFKGIKTGNTSVAGPCLASYYQTA 269

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +     V++G    ++R  + ++L+   L +
Sbjct: 270 NRSFTIVILGCRNQEDRWSETMQLLQWCLSQ 300


>gi|170755178|ref|YP_001781058.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum B1 str. Okra]
 gi|169120390|gb|ACA44226.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum B1 str. Okra]
          Length = 424

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/317 (27%), Positives = 133/317 (41%), Gaps = 35/317 (11%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           I L+  IL L+  + +  +     P     +++ IDV   ++   K  D+  YPAS TK 
Sbjct: 9   ISLLIFILTLTSNVFAAGNSNTESPTIYGKTAMTIDVETGEIIYAKNIDKRMYPASTTKY 68

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-----YLKEKTYFTTEQGILALITR 138
           +T  ++ E     K   N  IP + TA +Q    L      +        E  +  L+  
Sbjct: 69  LTALLLAEN--KGK---NDNIPYTATAKSQPQYSLNINLHPIDIGETIKAENVMDGLLLF 123

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S NDV+   G+ ++G+ K F  +M+ K +++ ++NT +   +GLH+ N  TTA D +++ 
Sbjct: 124 SGNDVAYMIGDALAGNNKNFENMMNKKIQELNLKNTHFVTPNGLHNPNHYTTAYDLSVIS 183

Query: 199 ILLRKNFPQYY----KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVT 254
               KN   Y     K  SI   +     I N NKLL K       KTGYT  +G  +VT
Sbjct: 184 RAALKNTWVYQSSNKKESSIVTSKGTKMTIENSNKLLGK-DGCVAGKTGYTDAAGRCLVT 242

Query: 255 SLRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
                   I+ VVMG     +     Q   ++I      K              ST  KK
Sbjct: 243 LFNRDGRKILGVVMGSVYDAKDSFVFQDMKKIIDWSYNVK-------------PSTLYKK 289

Query: 312 SLMIKKLKRTYSQFKKI 328
              +K    TY+  K I
Sbjct: 290 DSSLKTETVTYNPLKII 306


>gi|302335720|ref|YP_003800927.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Olsenella uli
           DSM 7084]
 gi|301319560|gb|ADK68047.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Olsenella uli
           DSM 7084]
          Length = 383

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 114/280 (40%), Gaps = 18/280 (6%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP-------KYSSIVIDVNKNQMTGFKQDEPRY 76
           + R+ +     + L+  +++++   +A           S  +ID +   +   K    R 
Sbjct: 1   MHRHTRFPLLAVVLTTFLVAVSPCAYAAETTPQVTEAQSFEIIDQD-GNVLASKDPNRRM 59

Query: 77  -PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
             AS+TK+MT  +  +  +     +     ++     +             T    +  +
Sbjct: 60  AMASITKIMTAMVALDSGK----SMGDVCSITDVTLPEGAQLAGYTSADAPTFGDLMRTM 115

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S ND +      ++G+E+ F  LM+ KA++IGM++T + N  GL + +  + A D A
Sbjct: 116 LVYSGNDAALNVAYAVAGTEEAFVELMNKKAREIGMEDTHFSNPHGLEEDDHYSCAHDLA 175

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           ++G    +N+P   +    R+         +   + ++L++    + GIKTG    +G  
Sbjct: 176 LMGKYALENYPFIARTVMTRRLTVTVGGQQKTFESTDELMDSYGGLCGIKTGKV-EAGTT 234

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
            + S +     + + V+G  T   R      L+    ++ 
Sbjct: 235 FLGSSKRHGLQLFSCVLGCTTDDGRFTDTRILMDWAYDEY 274


>gi|328954547|ref|YP_004371881.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454871|gb|AEB10700.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Desulfobacca
           acetoxidans DSM 11109]
          Length = 350

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 71/266 (26%), Positives = 118/266 (44%), Gaps = 11/266 (4%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKM 83
           +R++ +    L + +   + A   +     +  ++D +   +   +  +    PAS  K+
Sbjct: 3   RRSLAIWVVCLMVVVGGRAAAETDNPVRAIAYCIMDADTGTILSAQNHQMMLPPASTLKV 62

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
            T  +         L L  ++PVS  AA    SK+YLK    +     + A++  SAND 
Sbjct: 63  GTALVAI-----NTLQLQDKVPVSVNAAQAPASKIYLKPGEIYNVNDMLYAILLASANDA 117

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           + A GE +SGSE +FA  M+ + +++G   T ++ ASGL  + Q +TA D A +     +
Sbjct: 118 ARALGERVSGSEDRFARFMTKQLREMGAYRTNFETASGLPSEGQYSTAYDLAFIFRKAMQ 177

Query: 204 NFPQYYKYFSIRKFR-YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           N P   +  + + F     + + NHN+ L         KTGYTR S    V   R  D  
Sbjct: 178 N-PTLARIMNTKTFTLQDGKEVYNHNRFLFTTEYAVAGKTGYTRASKHTYVGLFRNGDKR 236

Query: 263 IVAVVMGMPTSQERDQKALELITSFL 288
           I+  +MG   SQ +      LI    
Sbjct: 237 IIVSMMG---SQGKWADLRTLIEKGF 259


>gi|221218183|ref|ZP_03589649.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 72a]
 gi|221192131|gb|EEE18352.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 72a]
          Length = 405

 Score =  193 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 74/307 (24%), Positives = 127/307 (41%), Gaps = 30/307 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             S +++D +  ++   K+      PASLTK++T+Y      + + + L + +P+S +A 
Sbjct: 40  AKSIVLMDFDTKRILYSKKPNLVFPPASLTKIVTIYTALIEAEKRNIKLKSIVPISDSAS 99

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
              A  N S ++L++      E+ +  L   S ND S A  EF+ G+   F  LM+    
Sbjct: 100 YYNALPNSSLMFLEKGQIVNFEEILKGLSVSSGNDSSIAIAEFVVGNLNSFVNLMNINVL 159

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------- 220
            +G+ N  +   SG   +N   TA D A       + F       S++ F Y        
Sbjct: 160 NLGLFNMHFVEPSGYSSEN-KITALDMAFFVKSYIEKFKFMLNIHSLKYFIYPKSRNLGT 218

Query: 221 -------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP-- 271
                  N    N N L+      DGIKTGY + SG N+V + +  +  ++AVV+G+   
Sbjct: 219 ALSSKFLNLKQRNANLLIYDYPYSDGIKTGYIKESGLNLVATAKKGERRLIAVVLGVEKG 278

Query: 272 ----TSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTY----S 323
                 + R   A  L      K +        K+ + + ++    +  K    Y     
Sbjct: 279 INGFGEKMRSSIAKNLFEYGFNKYSKFPLIVKLKEKVYNGTVDTVALFSKEPFYYILTKD 338

Query: 324 QFKKIDA 330
           +F KI+ 
Sbjct: 339 EFDKINI 345


>gi|322517677|ref|ZP_08070540.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           vestibularis ATCC 49124]
 gi|322123665|gb|EFX95257.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           vestibularis ATCC 49124]
          Length = 432

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 74/345 (21%), Positives = 141/345 (40%), Gaps = 37/345 (10%)

Query: 24  IQRNIQLM-GKILFLSIIMISMASEL---HAKPKYSSIVIDVNKNQMTGFKQDEPRY-PA 78
           +++ I LM   +L L  +  + A++    +      ++ ++ N  ++   K         
Sbjct: 15  MKKLITLMMTFLLCLGSVAPAFAADKKKGYDAAAKHAVAVEANTGKILYEKDATTSAGIG 74

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILA 134
           S+TK++T Y++++ +    L  N+++ +S        +   S + L  +  +T +Q + A
Sbjct: 75  SITKLLTAYMVYKAVDQGDLKWNSKVDISDYPFELTVSAGVSNIPLDAR-KYTVKQLLDA 133

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------- 183
            +  SAN  S A  E I G+E KF  +M  + K  G+ +    NASGL+           
Sbjct: 134 TLIASANSASIALAEEIGGTESKFVDMMKAQLKDWGITDAKIVNASGLNNSYLGDNIYPG 193

Query: 184 ---DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-RIITNHNKLLNKMH---- 235
              D+    +A+D A++   + K +P+        +  +     +   N +L        
Sbjct: 194 SKSDEENTMSAKDVAVIAQHVVKEYPEILDITKKTEADFDGVNKLKTSNYMLKGQPSYRK 253

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ----ERDQKALELIT---SFL 288
            +DG+KTG T  +G + V         I+AV++    +      R     +L+       
Sbjct: 254 GVDGLKTGTTDLAGASFVAHSNESGMSIIAVILNSDNTDTDDYARFTATNDLLNYVVYHW 313

Query: 289 EKKTL-KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
           E KT+ K  Q   K   S    K   +    K  ++  +KIDA  
Sbjct: 314 ESKTIAKKGQAIGKSQASVLDGKSKQVTAVAKSDFNIIQKIDANN 358


>gi|310827089|ref|YP_003959446.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium limosum KIST612]
 gi|308738823|gb|ADO36483.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium limosum KIST612]
          Length = 314

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 70/279 (25%), Positives = 114/279 (40%), Gaps = 37/279 (13%)

Query: 29  QLMGKILFLSIIMISMASEL-----HAKP----------KYSSIVIDVNKNQMTGFKQD- 72
            L   I  LS+ M+  A +       A P            S++++ ++  ++   K   
Sbjct: 22  ALFLIIAGLSLYMVVFAFKAISPGGPAHPVNAMGSAGLYSESAVLMRLDGGEVLFQKNSG 81

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKTAATQNPSKLYLKEKTYFTT 128
           E  YPASLTK+MT+ +I +  +     L+  +     V    +    S          T 
Sbjct: 82  EKIYPASLTKLMTVLVILDQFED----LDHTVTLPGEVFDCLSGSGASVAGFLPGEQLTL 137

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
              +   +  S  D         +GSE+ FA LM+ KA ++GM +T +KNA+GLHD    
Sbjct: 138 RDLLYGCVLPSGADAVMGLACATAGSEENFAELMNGKAAELGMAHTHFKNATGLHDPGHY 197

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRY-------RNRIITNH-NKLLN-KMHN--- 236
           TT  D A+L     KN P + +  +   ++            +++  N L+     +   
Sbjct: 198 TTVMDMAVLLRAGLKN-PDFRELLTTFDYQTEPTNRHPGGVGLSSTLNSLMGTPYPDGVT 256

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           + G KTGYT  +G  + T         +AV  G P S E
Sbjct: 257 LLGGKTGYTEEAGLCLATLAEKDGREYIAVTAGAPGSHE 295


>gi|168184273|ref|ZP_02618937.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf]
 gi|237794758|ref|YP_002862310.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum Ba4 str. 657]
 gi|182672602|gb|EDT84563.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf]
 gi|229261502|gb|ACQ52535.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum Ba4 str. 657]
          Length = 424

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 85/318 (26%), Positives = 132/318 (41%), Gaps = 37/318 (11%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           I L+  I  L+  + +        P     +++ IDV   ++   K  D+  YPAS TK 
Sbjct: 9   ISLLIFIFTLTSNVFAAGDSNTEPPTIYGKTAMTIDVETGEIIYAKNIDKRMYPASTTKY 68

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-----YLKEKTYFTTEQGILALITR 138
           +T  ++ E     K   N  IP + TA +Q    L      +        E  +  L+  
Sbjct: 69  LTALLLAEN--KGK---NDNIPYTATAKSQPQYSLNINLHPIDIGETIKAENVMDGLLLF 123

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S NDV+   G+ ++G+ K F  +M+ K +++ ++NT +   +GLH+ N  TTA D +++ 
Sbjct: 124 SGNDVAYMIGDALAGNNKNFENMMNKKIQELNLKNTHFVTPNGLHNPNHYTTAYDLSVIS 183

Query: 199 ILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
               KN P  Y     K  SI   +     I N NKLL K       KTGYT  +G  +V
Sbjct: 184 RAALKN-PWVYQSSNKKESSIVTSKGTKMTIENTNKLLGK-DGCVAGKTGYTDAAGRCLV 241

Query: 254 TSLRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKKTLKHQQTHRKDNLSSTSLK 310
           T        I+ +VMG     +     +   ++I      K              ST  K
Sbjct: 242 TLFNRDGRKILGIVMGSVYDAKDSFVFEDMKKIIDWSYNAK-------------PSTLYK 288

Query: 311 KSLMIKKLKRTYSQFKKI 328
           K   +K    TY+  K I
Sbjct: 289 KDSSLKTETVTYNPLKII 306


>gi|153938979|ref|YP_001390767.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum F str. Langeland]
 gi|152934875|gb|ABS40373.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum F str. Langeland]
 gi|295318839|gb|ADF99216.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum F str. 230613]
          Length = 424

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 88/318 (27%), Positives = 134/318 (42%), Gaps = 37/318 (11%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           I L+  IL L+  + +  +     P     +++ IDV   ++   K  D+  YPAS TK 
Sbjct: 9   ISLLIFILTLTSNVFAAGNSNTESPTIYGKTAMTIDVETGEIIYAKNIDKRMYPASTTKY 68

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-----YLKEKTYFTTEQGILALITR 138
           +T  ++ E     K   N  IP + TA +Q    L      +        E  +  L+  
Sbjct: 69  LTALLLAEN--KGK---NDNIPYTATAKSQPQYSLNINLHPIDIGETIKAENVMDGLLLF 123

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S NDV+   G+ ++G+ K F  +M+ K +++ ++NT +   +GLH+ N  TTA D +++ 
Sbjct: 124 SGNDVAYMIGDALAGNNKNFENMMNKKIQELNLKNTHFVTPNGLHNPNHYTTAYDLSVIS 183

Query: 199 ILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
               KN P  Y     K  SI   +     I N NKLL K       KTGYT  +G  +V
Sbjct: 184 RAALKN-PWVYQSSNKKESSIVTSKGTKMTIENSNKLLGK-DGCVAGKTGYTDAAGRCLV 241

Query: 254 TSLRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKKTLKHQQTHRKDNLSSTSLK 310
           T        I+ VVMG     +     Q   ++I      K              ST  K
Sbjct: 242 TLFNRDGRKILGVVMGSVYDAKDSFVFQDMKKIIDWSYNVK-------------PSTLYK 288

Query: 311 KSLMIKKLKRTYSQFKKI 328
           K   +K    TY+  K I
Sbjct: 289 KDSSLKTETVTYNPLKII 306


>gi|257884114|ref|ZP_05663767.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
           1,231,501]
 gi|257819952|gb|EEV47100.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
           1,231,501]
          Length = 435

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 127/311 (40%), Gaps = 35/311 (11%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQ 94
           FL  + +  A +       ++  +D    ++   +  E     AS+TK++ LYI+ + ++
Sbjct: 22  FLPAVAV-QAEDTFKVNAKAAFAVDAQSGKILYNQDGEKTMGIASITKIIGLYIVLDQVK 80

Query: 95  SKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             KL  + ++ +S  A     T + S + L ++  +T ++   + I +SAN    A  E 
Sbjct: 81  EGKLSWDDKVSISDYAENLSITPDLSNVPLHKENTYTVKELFDSAIIQSANASMVALAEK 140

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAI 196
           ISGSE KF   M  + K  G+++    NASGL+              +     +A+D AI
Sbjct: 141 ISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPEDTGENDENQMSAQDVAI 200

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIIT-----NHNKLLNKM----HNIDGIKTGYTRN 247
           +   L  +FP+     S     +     +     N N +L         +DG+KTG T  
Sbjct: 201 VARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTEL 260

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTLKH--QQTHRK 301
           +G   V ++   D  I+ VV+           R  +   L+    +  + K   +     
Sbjct: 261 AGACFVGTITKNDQRIITVVLNADGHAENPSARFNETDRLMDYCYDNWSEKELGKANASI 320

Query: 302 DNLSSTSLKKS 312
            +L +  +K  
Sbjct: 321 PSLKTIDVKDG 331


>gi|86148565|ref|ZP_01066850.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. MED222]
 gi|85833631|gb|EAQ51804.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. MED222]
          Length = 200

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 96/176 (54%), Gaps = 7/176 (3%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           F + I++  A ++ AK     +++D +  ++   K+ +    PASLTKMMT Y++ + L+
Sbjct: 27  FAAPIIVPDAPQIAAK---GFVLMDYHSGKVLAEKEMNTQLSPASLTKMMTSYVVGQELE 83

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              ++LN  + +S+ A  +N    SK++++  T    E+    +I +S ND   A  E I
Sbjct: 84  RGNINLNDDVVISENAWAKNFPDSSKMFIEVGTTVKVEELNRGIIIQSGNDACVAMAEHI 143

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
           +GSE  F  LM+  A  IGM++T + N  GL + N  +T  D A+LG  L ++ P 
Sbjct: 144 AGSEDAFVDLMNAWASSIGMKDTHFANVHGLDNPNLYSTPYDMALLGQALIRDVPD 199


>gi|170760715|ref|YP_001786794.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169407704|gb|ACA56115.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 422

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 86/318 (27%), Positives = 133/318 (41%), Gaps = 37/318 (11%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           I L+  IL L+  + +        P     +++ IDV   ++   K  D+  YPAS TK 
Sbjct: 9   ISLLIFILTLTSNVFAAGDSNTEPPAIYGKTAMTIDVETGEIIYAKNIDKRMYPASTTKY 68

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-----YLKEKTYFTTEQGILALITR 138
           +T  ++ E     K   N  IP + TA +Q    L      +        E  +  L+  
Sbjct: 69  LTALLLAEN--KGK---NDNIPYTATAKSQPQYSLNINLHPIDIGETIKAENVMDGLLLF 123

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S NDV+   G+ ++G+ K F  +M+ K +++ ++NT +   +GLH+ N  TTA D +++ 
Sbjct: 124 SGNDVAYMIGDALAGNNKNFENMMNKKIQELDLKNTHFVTPNGLHNPNHYTTAYDLSVIS 183

Query: 199 ILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
               KN P  Y     K  SI   +     I N NKLL K       KTGYT  +G  +V
Sbjct: 184 RAALKN-PWVYQSSNKKESSIVTSKGTKMTIENSNKLLGK-DGCVAGKTGYTDAAGRCLV 241

Query: 254 TSLRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKKTLKHQQTHRKDNLSSTSLK 310
           T        I+ +VMG     +     +   ++I      K              ST  K
Sbjct: 242 TLFNRDGRKILGIVMGSVYDAKDSFVFEDMKKIIDWSYNAK-------------PSTLYK 288

Query: 311 KSLMIKKLKRTYSQFKKI 328
           K   +K    TY+  K I
Sbjct: 289 KDSSLKTETVTYNPLKII 306


>gi|313105750|ref|ZP_07792013.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa 39016]
 gi|310878515|gb|EFQ37109.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa 39016]
          Length = 310

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 124/283 (43%), Gaps = 31/283 (10%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKY-----------SSIVIDVNKNQMTGFKQDEP 74
           RN  L    LFLS+  ++ A      PK            S++V D N  ++   +  + 
Sbjct: 2   RNRLLSLVTLFLSLS-VATAVSASPPPKAGLPLQQELASGSALVTDQNTGKVLYSRNPDL 60

Query: 75  RYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPV--SKTAATQN-PSKLYLKEKTYFTTEQ 130
             P AS+TK+MT  ++ +     KL L+  +P+  S+T+  +   S++  +  +  +   
Sbjct: 61  VVPIASITKLMTAMVVLDS----KLPLDEVLPIAISETSEMRGVFSRV--RVGSQISRRD 114

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +L  +  S N  + +  +   G +  F   M+ KA  +GM+NT Y   +GL   N ++T
Sbjct: 115 MLLLALMSSENRAAASLAQNYPGGKNAFVKAMNAKAHALGMKNTRYVEPTGLSLHN-VST 173

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRII--TNHNKLL-NKMHNIDGIKTG 243
           ARD   L ++  + +P   ++ +  +    FR+ N  +   N N L+ NK  NI   KTG
Sbjct: 174 ARDLTRL-LVASRQYPLLSQWSTTPEKTVAFRHPNYTLGFRNTNHLINNKTWNIQLTKTG 232

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           +T  +G  +V        P+  VV+           A  L   
Sbjct: 233 FTNEAGHCLVMRTTINRSPVNLVVLDAFGKYTHFADATRLRRW 275


>gi|295091874|emb|CBK77981.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cf.
           saccharolyticum K10]
          Length = 283

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 64/274 (23%), Positives = 114/274 (41%), Gaps = 30/274 (10%)

Query: 35  LFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIF 90
           LF S + +       A  + ++    + ++    +   K   E  YPAS+TK+MT  +  
Sbjct: 13  LFASALCVVDGETKDAGTELTAEAGALFNITDGTVLYSKNVFEELYPASITKVMTAILAI 72

Query: 91  EYLQSKKLHLNTQIPVSKTAA--TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           E  +     L+ ++ V++ A       S   +K     T EQ +  L+  S ND + A  
Sbjct: 73  EEGE-----LSDEVTVTQDAVITEAGASLAGIKPGDTLTMEQLLYGLMIPSGNDAANAIA 127

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
             +SGS + FA  M+ KA+++G  +T +KN +GL D    TTA D  ++     K  P++
Sbjct: 128 VHMSGSLESFAERMNEKARELGATHTHFKNPNGLTDPEHYTTAYDLYLIFNEALK-LPKF 186

Query: 209 YKYFSIRKFRYRNR-----IITNHNKLLNKMHN----------IDGIKTGYTRNSGFNIV 253
            +      +    R      ++   K+ N   N          + G KTG T+ +G+ ++
Sbjct: 187 REVIGADSYTASYRDADGNTVSKTWKVGNWYQNGEEKAPQGVTVLGGKTGTTQAAGYCLI 246

Query: 254 TSLRYK--DDPIVAVVMGMPTSQERDQKALELIT 285
                       ++VV+     Q        +IT
Sbjct: 247 M-AERDESGREYISVVLKAENRQGLYDNMTNIIT 279


>gi|259506608|ref|ZP_05749510.1| penicillin-binding protein [Corynebacterium efficiens YS-314]
 gi|259165806|gb|EEW50360.1| penicillin-binding protein [Corynebacterium efficiens YS-314]
          Length = 438

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 106/244 (43%), Gaps = 15/244 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + +V D++  ++   K    RY PAS+ K +   I  E L         ++  +  AA
Sbjct: 124 ASAWMVFDLDSGEILAAKDPHGRYRPASIIKALIGLIAIEQLDP-----TQKVTGTWDAA 178

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S++ + E   +T ++ +  L+  S ND +    + + G E     +++ +A++IG 
Sbjct: 179 NIEGSRVGVGEGGEYTVDELLHGLLLASGNDAAYLLAQELGGDEAT-LEMVNERAREIGT 237

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------NRIIT 225
           ++T     SGL      T+A D A++     KN P++ +        +          + 
Sbjct: 238 EDTFVATYSGLDAPGMSTSAYDMALIYQHAWKN-PRFAQIVDTEFIDFPGWGDNEGFQVW 296

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-DQKALELI 284
           N N L     +  G KTGYT ++    V +L  +   I AV++     + R  ++A ELI
Sbjct: 297 NDNGLFMNDPDGIGGKTGYTDDANHTFVGALNREGRRIGAVILDTTIDKGRPWEQARELI 356

Query: 285 TSFL 288
            + L
Sbjct: 357 DASL 360


>gi|25027255|ref|NP_737309.1| putative penicillin-binding protein [Corynebacterium efficiens
           YS-314]
 gi|23492536|dbj|BAC17509.1| putative penicillin-binding protein [Corynebacterium efficiens
           YS-314]
          Length = 447

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 106/244 (43%), Gaps = 15/244 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + +V D++  ++   K    RY PAS+ K +   I  E L         ++  +  AA
Sbjct: 133 ASAWMVFDLDSGEILAAKDPHGRYRPASIIKALIGLIAIEQLDP-----TQKVTGTWDAA 187

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S++ + E   +T ++ +  L+  S ND +    + + G E     +++ +A++IG 
Sbjct: 188 NIEGSRVGVGEGGEYTVDELLHGLLLASGNDAAYLLAQELGGDEAT-LEMVNERAREIGT 246

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------NRIIT 225
           ++T     SGL      T+A D A++     KN P++ +        +          + 
Sbjct: 247 EDTFVATYSGLDAPGMSTSAYDMALIYQHAWKN-PRFAQIVDTEFIDFPGWGDNEGFQVW 305

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-DQKALELI 284
           N N L     +  G KTGYT ++    V +L  +   I AV++     + R  ++A ELI
Sbjct: 306 NDNGLFMNDPDGIGGKTGYTDDANHTFVGALNREGRRIGAVILDTTIDKGRPWEQARELI 365

Query: 285 TSFL 288
            + L
Sbjct: 366 DASL 369


>gi|142817|gb|AAA22375.1| penicillin binding protein 5 [Bacillus subtilis]
          Length = 396

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 62/267 (23%), Positives = 120/267 (44%), Gaps = 32/267 (11%)

Query: 61  VNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKTAATQNP 115
            +  ++   K  + R P AS+TKMMT Y++ E +   K+  +        V + +   + 
Sbjct: 1   ASSGKILYSKNADKRLPIASMTKMMTEYLLLEAIDQGKVKWDQTYTPDDYVYEISQDNSL 60

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S + L++   +T ++   A    SAN  + A  E ++GSE KF   M+ KAK++G+ +  
Sbjct: 61  SNVPLRKDGKYTVKELYQATAIYSANAAAIAIAEIVAGSETKFVEKMNAKAKELGLTDYK 120

Query: 176 YKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           + NA+GL +K+                 +A+D A+L   L  ++P+  +  SI K ++R 
Sbjct: 121 FVNATGLENKDLHGHQPEGTSVNEESEVSAKDMAVLADHLITDYPEILETSSIAKTKFRQ 180

Query: 222 RI-----ITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
                  + N N +L  +        +DG+KTG T ++G     +       ++ VV+  
Sbjct: 181 GTDDEMDMPNWNFMLKGLVSEYKKATVDGLKTGSTDSAGSCFTGTAERNGMRVITVVLNA 240

Query: 271 PTS--QERDQKALELITSFLEKKTLKH 295
             +    R  +  ++     +  ++K 
Sbjct: 241 KGNLHTGRFDETKKMFDYAFDNFSMKE 267


>gi|257452169|ref|ZP_05617468.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 3_1_5R]
          Length = 383

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 118/241 (48%), Gaps = 13/241 (5%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           + +V D  +  +   K  D+    AS+TK+MTL + F+ +++ + H + ++ ++K    +
Sbjct: 139 AGLVAD-TRGNIYYSKNIDKKLPMASVTKVMTLLVTFDAIRNGEAHFDDKVVITKDVYNK 197

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGM- 171
             S + +K    FT    I A    SAN+ + A  + I  GS   F   M+ KA+++G+ 
Sbjct: 198 GGSGISMKPGETFTLLDLIRATAIYSANNAAYAVAKHIGKGSIPNFIKKMNKKAREVGVS 257

Query: 172 QNTIYKNASGLH-----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RII 224
           +   Y + +GL      +   I TAR    L +   K +P+Y +   I++ +  N    I
Sbjct: 258 KEISYYSPAGLPTRYTKEPMDIGTARGIYKLSLEAIK-YPEYMEIAGIKQMKIHNGRISI 316

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            N N L+ +   I GIKTGY + + +NI  + +      + V++G  + ++RD   L L+
Sbjct: 317 RNRNHLIGE-EGIYGIKTGYHKEAKYNITVASKDGQREFIVVILGGNSYKDRDNAVLHLL 375

Query: 285 T 285
            
Sbjct: 376 D 376


>gi|224498349|ref|ZP_03666698.1| hypothetical protein LmonF1_01100 [Listeria monocytogenes Finland
           1988]
          Length = 269

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 115/241 (47%), Gaps = 7/241 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+ V  V   +M   K  +   P ASLTK+MT +++ E + +KKL  + Q+ + +   
Sbjct: 31  AQSAAVFSVENGKMLYEKNADKVMPIASLTKLMTAFLVLEAVDNKKLSWDEQLDLVRLDD 90

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S   + +K  ++      A++  SAND +   G+ + G    F   M+N+AKK+G+
Sbjct: 91  PSAVSLYAITQKRTWSVRDLYSAMLVMSANDAAETLGDRLEG--ASFPQKMNNEAKKLGL 148

Query: 172 QN-TIYKNASGLHDKNQI--TTARDQAILGILLRKNFPQYYKYFSIRK-FRYRNRIITNH 227
            N T + +ASGL    ++  +T +D  +L   L     +  +  S           + + 
Sbjct: 149 SNKTKFVSASGLDVDGEMAVSTTKDLFLLSSKLISTHSEVLETTSKSSIITEEGAKLEST 208

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           N L+  +  +DG+KTG+T  +G+  + +       ++++V+   T+++R +   +L+   
Sbjct: 209 NDLIGAIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDADTAEKRFKDTEQLMKVG 268

Query: 288 L 288
            
Sbjct: 269 F 269


>gi|34557129|ref|NP_906944.1| penicillin-binding protein [Wolinella succinogenes DSM 1740]
 gi|34482844|emb|CAE09844.1| PENICILLIN-BINDING PROTEIN [Wolinella succinogenes]
          Length = 283

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 120/248 (48%), Gaps = 16/248 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S I+ D++  ++   K+      PASLTK+MT  +  E  +     +N  + ++      
Sbjct: 35  SLIIKDLSNKKILYAKETHKEVRPASLTKIMTAILAIESGK-----MNEVVTITPEMTLV 89

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
            PSK   K    F     + + + +SAND +T  G F+ GS + F  +M+ KAK +GM+ 
Sbjct: 90  EPSKAGFKVGEKFYLRDLVKSALIQSANDSATGIGIFVGGSSENFVKMMNKKAKALGMKE 149

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITN-- 226
           T + NA+G    + ++TA D  +L     KN   + +   + K  +     +N+I T+  
Sbjct: 150 TNFTNAAGFDIGDHLSTAHDLMLLAEYAIKN-KSFNEIVKMNKHTFSPINNKNKIYTSWT 208

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           HNKLL       GIKTGYT  +G  ++   +  +  ++ V++   + + R + A  +   
Sbjct: 209 HNKLLRTHKYTIGIKTGYTSKAGPCLIARAKKGEKDLLLVMLN--SKENRWKSAQAIFDE 266

Query: 287 FLEKKTLK 294
            +EK+ + 
Sbjct: 267 VIEKERVN 274


>gi|309775554|ref|ZP_07670554.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308916648|gb|EFP62388.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 337

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 61/202 (30%), Positives = 97/202 (48%), Gaps = 9/202 (4%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE 129
            +D+ +  AS++K+MT  I  E+ +     L+    V +       S +YLK+    T  
Sbjct: 48  NKDDKQSVASISKIMTAVIAIEHGK-----LDEAFTVDEEINKAYGSSVYLKQGQTVTLR 102

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKNQ 187
             + AL+ RS ND +    + +SGS++ F   M+ KA +IGM NT + N SGL   D   
Sbjct: 103 DLLYALMLRSGNDAAVEIAKHVSGSQEAFVEAMNQKAAEIGMSNTTFSNPSGLDEEDGGN 162

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNHNKLLNKMHNIDGIKTGYTR 246
           I+TA D AIL     KN  ++      + +    N    N N+LL       G KTG+T+
Sbjct: 163 ISTANDMAILMSYAMKN-KEFRTITGSKYYTTDWNMRWKNKNRLLFDYPFTIGGKTGFTK 221

Query: 247 NSGFNIVTSLRYKDDPIVAVVM 268
            +G  +VT+  +     + V +
Sbjct: 222 KAGRTLVTAAEHDGVESIVVTL 243


>gi|260584324|ref|ZP_05852071.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella elegans
           ATCC 700633]
 gi|260157842|gb|EEW92911.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella elegans
           ATCC 700633]
          Length = 442

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 76/343 (22%), Positives = 150/343 (43%), Gaps = 51/343 (14%)

Query: 45  ASELHA-KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           A E+ A +   S I I+    ++   K  D+ R  AS++KM++ Y+I E +++ ++   T
Sbjct: 16  AEEIAALEDVASYIAIEQTSGKILMEKNQDDVRGIASMSKMVSQYLILEAIKNSEITWET 75

Query: 103 QIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
           +IP+S+ A    A  + S + L     ++ ++   A    SAN  + A  E+++GSE K+
Sbjct: 76  KIPISERASKLSANYSLSNVPLWPNEKYSIQELFEASSIYSANAATIAMAEYLAGSEAKW 135

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDK--------------NQITTARDQAILGILLRKN 204
              M  K +  G+ +    NA+GL +K                  +AR  AI+   L  +
Sbjct: 136 VERMKEKVESWGIHDATIVNATGLPNKYGTTEKNPDFGDEAENSMSARSVAIVARRLVLD 195

Query: 205 FPQYYKYFSIRKFRYRNRI-----ITNHNK----LLNKMHNIDGIKTGYTRNSGFNIVTS 255
           FP+  K  S+    +R        + N N     LL     ++G+KTG +  SG +I T+
Sbjct: 196 FPEILKISSVATKEFRPGTAGVTKMDNFNYLIPGLLFGYDGVNGLKTGTSEISGASITTT 255

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK----------KTLKHQQTHRKDNLS 305
               +  ++ V MG      R +   +++    +K          K++++ Q +  +  +
Sbjct: 256 ATRNNFSVIVVTMGSKQPLNRFKVTTKMLDELFKKYEGLVVGIPGKSVQNIQPYPVNGGA 315

Query: 306 S------------TSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
                         ++ K   + ++K  +  FK++  + ++ Q
Sbjct: 316 DEKISVDYGDNFVAAVPKGTAMSQVKVRFEPFKELLDENNALQ 358


>gi|1518782|gb|AAC46341.1| penicillin-binding protein 5 [Pseudomonas aeruginosa]
          Length = 311

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 124/283 (43%), Gaps = 31/283 (10%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKY-----------SSIVIDVNKNQMTGFKQDEP 74
           RN  L    LFLS+  ++ A      PK            S++V D N  ++   +  + 
Sbjct: 2   RNRLLSLVTLFLSLS-VATAVSASPPPKAGLPLQQELASGSALVTDQNTGKVLYSRNPDL 60

Query: 75  RYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPV--SKTAATQN-PSKLYLKEKTYFTTEQ 130
             P AS+TK+MT  ++ +     KL L+  +P+  S+T+  +   S++  +  +  +   
Sbjct: 61  VVPIASITKLMTAMVVLDS----KLPLDEVLPIAISETSEMRGVFSRV--RVGSQISRRD 114

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +L  +  S N  + +  +   G +  F   M+ KA  +GM+NT Y   +GL   N ++T
Sbjct: 115 MLLLALMSSENRAAASLAQNYPGGKNAFVKAMNAKAHALGMKNTRYVEPTGLSLHN-VST 173

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRII--TNHNKLL-NKMHNIDGIKTG 243
           ARD   L ++  + +P   ++ +  +    FR+ N  +   N N L+ NK  NI   KTG
Sbjct: 174 ARDLTRL-LVASRQYPLLSQWSTTPEKTVAFRHPNYTLGFRNTNHLINNKTWNIQLTKTG 232

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           +T  +G  +V        P+  VV+           A  L   
Sbjct: 233 FTNEAGHCLVMRTTINRSPVNLVVLDAFGKYTHFADATRLRRW 275


>gi|229074634|ref|ZP_04207657.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18]
 gi|228708516|gb|EEL60666.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18]
          Length = 407

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 71/286 (24%), Positives = 125/286 (43%), Gaps = 19/286 (6%)

Query: 56  SIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +  ID     +   K    R YPAS+TK++T  ++ E+ +        Q   S+ A  Q 
Sbjct: 31  AATIDAKTGDLLYDKNAHHRAYPASVTKVLTAILLMEHTKP-----EDQFTFSQLALDQE 85

Query: 115 PSKLYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
            S   ++            ++ L+  SANDVS A  E I GS + FA +M+ KAK++G  
Sbjct: 86  KSNYQIEFQPGETVNRNTALMILMVLSANDVSYAIAEHIGGSVENFANMMNEKAKQLGAT 145

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIITNHNKL 230
           ++ +   +GLHD N  TT  D A++   ++K +P+  +  + ++       + ++  NK 
Sbjct: 146 DSHFVTPNGLHDPNHYTTPYDIAMITRDVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKS 204

Query: 231 LN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSF 287
           +  +     G KTG+T  +   +V       + I+ VVM     +  E  ++  E     
Sbjct: 205 IYFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMAEYSFGQ 264

Query: 288 LEKKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
             K+ +      HQ+T   +    + L+KS  +   K      K I
Sbjct: 265 FTKQMVLDKHSWHQKTTYLNKDIDSELEKSAELVLKKDEGKNVKTI 310


>gi|154483607|ref|ZP_02026055.1| hypothetical protein EUBVEN_01311 [Eubacterium ventriosum ATCC
           27560]
 gi|149735517|gb|EDM51403.1| hypothetical protein EUBVEN_01311 [Eubacterium ventriosum ATCC
           27560]
          Length = 324

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 66/273 (24%), Positives = 122/273 (44%), Gaps = 22/273 (8%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
              AS TK+MT  +  E  +     +N  I  S  A +    K+Y K+   +  +  + A
Sbjct: 1   MPMASTTKIMTCIVALESGK-----MNQIIKASSKAVSMPKVKMYAKKGEQYYLKDLLYA 55

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           ++  S ND +    E I GS+++FA +M+ KAK+IG +NT +   +GL   N  +TA D 
Sbjct: 56  MMLESFNDAAMIVAEGIGGSQEEFAKMMNKKAKEIGAKNTNFVTPNGLDADNHYSTAYDM 115

Query: 195 AILGILLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
           A++G    KN  Q+ +  + + + +      R+  + N +  L   +   GIKTG+T  +
Sbjct: 116 ALIGAYATKN-KQFNEITNTKSYSFTDVSAKRSITVNNKDMFLAMDNEAIGIKTGFTGKA 174

Query: 249 GFNIVTSLRYKDDPIVAVVMGM---PTSQERDQKALELIT----SFLEKKTLKHQQTHRK 301
           G+  V +++      V+ V+     P    + +    L+      + EKK +      + 
Sbjct: 175 GYCFVGAVKSNGRHFVSCVLACGWPPNKSYKWKDTTALMNHGKREYNEKKIIASGTKFQI 234

Query: 302 DNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
           +  + T  K ++ + +    Y+     D    S
Sbjct: 235 EIPNGTKKKINVGVSEG---YTTLISEDDNVKS 264


>gi|194336246|ref|YP_002018040.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308723|gb|ACF43423.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 390

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 75/308 (24%), Positives = 127/308 (41%), Gaps = 30/308 (9%)

Query: 1   MLQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAK--------- 51
           +L   I  S K+ F  Y    + + R I     ++F  I +      L A+         
Sbjct: 5   ILISAIFRSRKRAFCIYRKPPLSLFRQIT--CFVVFFVIAVTITPLFLLAQTGDDSLRSP 62

Query: 52  -PKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
            P  S IV +   ++    K  E    PASLTK++T  +  E  +     L   + ++K 
Sbjct: 63  FPINSYIVKERGGSKFLMAKDIEKSVSPASLTKILTCIMAIESGR-----LEEDVLITKE 117

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +    PSK   K          + A +  S+ND + A    +SG  + F   M+ +A++I
Sbjct: 118 STLVEPSKAGFKPGEKIRLIDLVKAAMVNSSNDAAFAIAIHLSGDVESFVAAMNYRAQRI 177

Query: 170 GMQNTIYKNASGLHD---KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--- 223
           GM+N+ + N +G          +TA D   L     KN P + +   + +  +  +    
Sbjct: 178 GMRNSRFTNPAGFDKALYAGNSSTAEDLLHLTEYAVKN-PVFNQIARLEQVVFTEQTTRK 236

Query: 224 ---ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
              +  HNKLL+K     GIKTGYT  +G  ++      +  I+ V++   T  +R   A
Sbjct: 237 VYSLKTHNKLLDKYPYAVGIKTGYTSTAGRCLIARAIKDNRDILLVMLNAKT--DRWTIA 294

Query: 281 LELITSFL 288
            ++  S  
Sbjct: 295 ADIFDSVF 302


>gi|15596066|ref|NP_249560.1| D-alanyl-D-alanine endopeptidase [Pseudomonas aeruginosa PAO1]
 gi|107100327|ref|ZP_01364245.1| hypothetical protein PaerPA_01001352 [Pseudomonas aeruginosa PACS2]
 gi|116048793|ref|YP_792407.1| D-alanyl-D-alanine endopeptidase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893162|ref|YP_002442031.1| D-alanyl-D-alanine endopeptidase [Pseudomonas aeruginosa LESB58]
 gi|254239222|ref|ZP_04932545.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa C3719]
 gi|254245156|ref|ZP_04938478.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa 2192]
 gi|12230964|sp|P72161|PBP5_PSEAE RecName: Full=D-alanyl-D-alanine endopeptidase;
           Short=DD-endopeptidase; AltName: Full=Penicillin-binding
           protein 5; Short=PBP-5; Flags: Precursor
 gi|9946767|gb|AAG04258.1|AE004521_9 D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa PAO1]
 gi|115584014|gb|ABJ10029.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126171153|gb|EAZ56664.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa C3719]
 gi|126198534|gb|EAZ62597.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa 2192]
 gi|218773390|emb|CAW29202.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa LESB58]
          Length = 310

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 124/283 (43%), Gaps = 31/283 (10%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKY-----------SSIVIDVNKNQMTGFKQDEP 74
           RN  L    LFLS+  ++ A      PK            S++V D N  ++   +  + 
Sbjct: 2   RNRLLSLVTLFLSLS-VATAVSASPPPKAGLPLQQELASGSALVTDQNTGKVLYSRNPDL 60

Query: 75  RYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPV--SKTAATQN-PSKLYLKEKTYFTTEQ 130
             P AS+TK+MT  ++ +     KL L+  +P+  S+T+  +   S++  +  +  +   
Sbjct: 61  VVPIASITKLMTAMVVLDS----KLPLDEVLPIAISETSEMRGVFSRV--RVGSQISRRD 114

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +L  +  S N  + +  +   G +  F   M+ KA  +GM+NT Y   +GL   N ++T
Sbjct: 115 MLLLALMSSENRAAASLAQNYPGGKNAFVKAMNAKAHALGMKNTRYVEPTGLSLHN-VST 173

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRII--TNHNKLL-NKMHNIDGIKTG 243
           ARD   L ++  + +P   ++ +  +    FR+ N  +   N N L+ NK  NI   KTG
Sbjct: 174 ARDLTRL-LVASRQYPLLSQWSTTPEKTVAFRHPNYTLGFRNTNHLINNKTWNIQLTKTG 232

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           +T  +G  +V        P+  VV+           A  L   
Sbjct: 233 FTNEAGHCLVMRTTINRSPVNLVVLDAFGKYTHFADATRLRRW 275


>gi|257466039|ref|ZP_05630350.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 381

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 118/241 (48%), Gaps = 13/241 (5%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           + +V D  +  +   K  D+    AS+TK+MTL + F+ +++ + H + ++ ++K    +
Sbjct: 137 AGLVAD-TRGNIYYSKNIDKKLPMASVTKVMTLLVTFDAIRNGEAHFDDKVVITKDVYNK 195

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGM- 171
             S + +K    FT    I A    SAN+ + A  + I  GS   F   M+ KA+++G+ 
Sbjct: 196 GGSGISMKPGEKFTLLDLIRATAIYSANNAAYAVAKHIGKGSIPNFIKKMNKKAREVGVS 255

Query: 172 QNTIYKNASGLH-----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RII 224
           +   Y + +GL      +   I TAR    L +   K +P+Y +   I++ +  N    I
Sbjct: 256 KEISYYSPAGLPTRYTKEPMDIGTARGIYKLSLEAIK-YPEYMEIAGIKQMKIHNGRISI 314

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            N N L+ +   I GIKTGY + + +NI  + +      + V++G  + ++RD   L L+
Sbjct: 315 RNRNHLIGE-EGIYGIKTGYHKEAKYNITVASKDGQREFIVVILGGNSYKDRDNAVLHLL 373

Query: 285 T 285
            
Sbjct: 374 D 374


>gi|240146306|ref|ZP_04744907.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis
           L1-82]
 gi|257201547|gb|EEU99831.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis
           L1-82]
          Length = 327

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 110/246 (44%), Gaps = 24/246 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLY 119
            N++   K   E  YPAS TK++T YI  +Y       L+  + +S+ AA Q  + S   
Sbjct: 87  TNEIVYAKNIYERLYPASTTKILTAYIALKYCTD----LSQTVTISENAANQASDSSVCG 142

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           L        +  +  ++ RS ND + A  E ISGS ++FA LM+ +A  +G   + + N 
Sbjct: 143 LHAGDVIRMDDLLYGMMLRSGNDAAIAIAESISGSVEEFAALMNKEAAALGATQSHFVNP 202

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF---------RYRNRIITNHNKL 230
           +GL D+N  T+  D  ++     +N   + +  S   +                 N N+ 
Sbjct: 203 NGLPDENHYTSVYDLYLIFRAALQN-ETFVQIISTTSYDVTYQAGDGTIEEHTWENTNQY 261

Query: 231 LN---KMHN---IDGIKTGYTRNSGFNIVT-SLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           L+   K  +   + G KTG T ++G+ +V  S+  +  PI+++V+             E+
Sbjct: 262 LSGHAKSPDGFTVIGGKTGTTGDAGYCLVLYSMNEQSQPIISIVLKADGKSNLYLLMNEM 321

Query: 284 ITSFLE 289
           ++ F  
Sbjct: 322 LSGFAN 327


>gi|153954083|ref|YP_001394848.1| DacA3 [Clostridium kluyveri DSM 555]
 gi|219854696|ref|YP_002471818.1| hypothetical protein CKR_1353 [Clostridium kluyveri NBRC 12016]
 gi|146346964|gb|EDK33500.1| DacA3 [Clostridium kluyveri DSM 555]
 gi|219568420|dbj|BAH06404.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 420

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 133/318 (41%), Gaps = 32/318 (10%)

Query: 24  IQRNIQLMGKILFLSIIM---ISMASE----LHAKPKYSSIVIDVNKNQMTGFKQ-DEPR 75
           ++R   ++  +L  ++ +   +S A E    L      S+I +D+  N++   K  D   
Sbjct: 1   MKRKNNIILFVLIFTLCLNLNVSAADESSNTLPEIYGTSAITVDMQTNEIIYEKNPDTKI 60

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-----YLKEKTYFTTEQ 130
           YPAS TK++T  ++      K       +  +  A  Q  S L      ++     + + 
Sbjct: 61  YPASTTKLLTAILL-----EKNKKETDMLTYTAEAKAQPQSSLNSAARPIEVGDTISAKN 115

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            + AL+  SAND++    E IS S  +FA  M+ + + + ++NT +   +GLH+ +  +T
Sbjct: 116 VMDALLMFSANDMACVIAENISKSIPEFADKMNEEVQSLNLKNTHFITPNGLHNPDHYST 175

Query: 191 ARDQAILGILLRKNF----PQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           + D +I+     KN       Y    ++   +  +  I N NKLL K     G KTGYT 
Sbjct: 176 SYDMSIIAREAFKNSWIRDTIYKSTSTVTTSKGASFAIINTNKLLGK-DGCIGGKTGYTD 234

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGM---PTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
            +G  +V      +  I+ +VM                ++I     K        H KD+
Sbjct: 235 PAGRCLVAIYERDNRKILGIVMNSIYDTNDTYVFNDMEKIINWSYSKTPYI---LHAKDS 291

Query: 304 LSSTSLKKSLMIKKLKRT 321
           +     KK +  K L  T
Sbjct: 292 IID---KKDVKFKFLPFT 306


>gi|253579887|ref|ZP_04857155.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848886|gb|EES76848.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 472

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 116/261 (44%), Gaps = 23/261 (8%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            +       ++IV++ + N +   K  D+P YPAS  K+MT  +  E        L+ Q+
Sbjct: 105 PQASDISSAAAIVMETSTNTVLYSKNADQPLYPASAVKIMTCLVALE-----NSSLDEQV 159

Query: 105 PVSKTAAT---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
            ++ T  +      + +  +    FT EQ + A++  SAND++    E + GS   F   
Sbjct: 160 TMTATGVSGVTDGGANISSQLDEVFTMEQCLYAIMVASANDIALQVAEHVGGSVDAFVQT 219

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR--- 218
           M+ +A+++G  NT++ N +GL D+NQ  TA D A++      N   +    +   +    
Sbjct: 220 MNTRAQELGCTNTVFTNPTGLPDENQHITAHDMALIMEAAMAN-DTFRTIAATTSYTLPA 278

Query: 219 ----YRNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
                  R++TN+  ++N           G K GYT  SG  +V      +  +V +V+ 
Sbjct: 279 TNVSGGERVLTNNFTMINSTSDGYYKPCIGGKEGYTEASGSTLVCEASKNNMKLVCIVLN 338

Query: 270 MPTSQERDQKALELITSFLEK 290
             +    D +A+ L+    + 
Sbjct: 339 GASGVT-DDEAIALLNYGFDN 358


>gi|228477822|ref|ZP_04062450.1| D-alanyl-D-alanine carboxypeptidase DacA [Streptococcus salivarius
           SK126]
 gi|228250514|gb|EEK09728.1| D-alanyl-D-alanine carboxypeptidase DacA [Streptococcus salivarius
           SK126]
          Length = 432

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 74/346 (21%), Positives = 138/346 (39%), Gaps = 37/346 (10%)

Query: 24  IQRNIQLM-GKILFLSIIMISMASEL---HAKPKYSSIVIDVNKNQMTGFKQDEPRY-PA 78
           +++ I LM   +L L  +  + A++    +      +I ++    ++   K         
Sbjct: 15  MKKLITLMMTFLLCLGSVAPAFAADKKKGYDAAAKHAIAVEATTGKILYEKDATTSTGIG 74

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILA 134
           S+TK++T Y++++ +    L  N+++ +S        +   S + L  +  +T +Q + A
Sbjct: 75  SITKLLTAYMVYKAVDQGDLKWNSKVEISDYPFELTVSAGVSNIPLDAR-KYTVKQLLDA 133

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------- 183
            +  SAN  S A  E I G+E KF  +M  + K  G+ +    NASGL+           
Sbjct: 134 TLISSANSASIALAEEIGGTESKFVDMMKAQLKDWGITDAKIVNASGLNNSYLGDNIYPG 193

Query: 184 ---DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-RIITNHNKLLNKMH---- 235
              D+    +A+D AI+   + K +P+        +  +     +   N +L        
Sbjct: 194 SKSDEENTMSAKDVAIIAQHVVKEYPEILDITKKTEADFDGVNKLKTFNYMLKGQPSYRK 253

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ----ERDQKALELIT---SFL 288
            +DG+KTG T  +G + V         I+ V+M    +      R     +L+       
Sbjct: 254 GVDGLKTGTTDLAGASFVAHSNESGMSIITVIMNADNTDTDDYARFTATNDLLNYVVYHW 313

Query: 289 EKKTL-KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAH 333
           E KT+ K  Q   K        K   +    K  ++  +KIDA   
Sbjct: 314 ESKTIAKKGQAIGKSQAHVIDGKSKQVTAVAKSDFNIIQKIDANNS 359


>gi|293400703|ref|ZP_06644848.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305729|gb|EFE46973.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 332

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 69/248 (27%), Positives = 113/248 (45%), Gaps = 15/248 (6%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVI-DVNKNQMTGFKQDEPRY-PASLTKMMTLYI 88
           M K+L   + +I     +H     S  V+ D + N +   K        AS++K+MT  +
Sbjct: 4   MKKLLCFFLCLIINLETVH---GQSYCVMSDAD-NTVIEEKDMHKVQSVASISKVMTAIL 59

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
             E     K  LN      K       S +YLKE    +    +  L+ RS ND +    
Sbjct: 60  ALE-----KGDLNATWKTGKELKQAYGSMIYLKEGQQVSLRSLLYGLMLRSGNDAALEIA 114

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILGILLRKNFP 206
             I  ++KKF  +M+ KAK+IGM +T + N SGL   D   +++A D A+L     KN P
Sbjct: 115 LHIGKTQKKFVQMMNEKAKEIGMLDTHFANPSGLDEEDGGNLSSAYDMALLMSYAMKN-P 173

Query: 207 QYYKYFSIRKFR-YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            + +    + +    N    N NKLL +       KTG+T+ +G  ++++ ++++   V 
Sbjct: 174 AFREISGTKYYTSEWNYRWRNKNKLLFEYPFAIAGKTGFTKKAGRTLISAAKHENVENVI 233

Query: 266 VVMGMPTS 273
           V +GM   
Sbjct: 234 VTLGMGDD 241


>gi|315150905|gb|EFT94921.1| putative beta-lactamase [Enterococcus faecalis TX0012]
          Length = 493

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 129/298 (43%), Gaps = 37/298 (12%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQDE 73
           L    G+ + Q  +    + +  ++I   M + L A     ++IV+D +  ++   +Q +
Sbjct: 22  LVVSCGAFFAQPTVTHAEEDI--TVIAKKMGTTLKADGIPKAAIVVDADSGEILWSQQPD 79

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT----- 127
               PAS+ K+MT+Y+ FE ++  K  ++T +  ++     + SK+Y       T     
Sbjct: 80  LAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DVDISKIYAISNNKITLGVAY 137

Query: 128 -TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL--- 182
              + +  +   S+N  +      ISG++   F  LM+ KA ++GM NT Y N SG    
Sbjct: 138 PVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQAS 197

Query: 183 ------------HDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIIT 225
                        + + ++TARD A L     KN+P+  +                    
Sbjct: 198 AFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEETFE 257

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            +N  L         +DG+KTG +   GFN + +++  D  ++ V++G+   Q +D +
Sbjct: 258 AYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDGE 315


>gi|262037478|ref|ZP_06010938.1| serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia goodfellowii
           F0264]
 gi|261748513|gb|EEY35892.1| serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia goodfellowii
           F0264]
          Length = 356

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 66/272 (24%), Positives = 129/272 (47%), Gaps = 11/272 (4%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMM 84
           +N++ +  IL + +I     +E      Y +I+I      +   +      P AS+TK+M
Sbjct: 2   KNLRKIFIILTIFVISSFAFAEGENYFDYKAILIGDTNGNIAREENSYAVRPLASVTKVM 61

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T+ +  + + S ++ LN ++ VS+ AA+  P  + L     +T    + A   RS+N+ +
Sbjct: 62  TIMLTLDKVHSGEISLNDRVVVSEAAASV-PYGIKLVAGNEYTVRDLLKATAIRSSNNAA 120

Query: 145 TAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT-----ARDQAILG 198
            A  E++S G+  +F   M+NKA++ G  +  + +  GL      +      ARD   + 
Sbjct: 121 YALAEYVSNGNVYEFVNSMNNKARQSGWDSLRFCSPHGLPPSYTGSCMDQGNARDLYKMA 180

Query: 199 ILLRKNFPQYYKYF--SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           +     + +Y      S+    + N  +T  N LL K+  +DG+KTGY   +G NI+ + 
Sbjct: 181 MKAV-TYKEYMNIAKESVDFIDHGNIKLTATNHLLGKVPGVDGLKTGYHNAAGSNIILTA 239

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +   + ++ V++G   ++ RD    + I  + 
Sbjct: 240 KRNGERMILVILGSTKAKNRDAIGEKEINDYF 271


>gi|57239549|ref|YP_180685.1| penicillin-binding protein dacF precursor [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58579535|ref|YP_197747.1| penicillin-binding protein dacF precursor [Ehrlichia ruminantium
           str. Welgevonden]
 gi|57161628|emb|CAH58557.1| putative exported D-alanyl-D-alanine carboxypeptidase [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58418161|emb|CAI27365.1| Penicillin-binding protein dacF precursor [Ehrlichia ruminantium
           str. Welgevonden]
          Length = 290

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 69/276 (25%), Positives = 129/276 (46%), Gaps = 6/276 (2%)

Query: 24  IQRNIQLMGKILFLSIIMI---SMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           + R+  ++   +   ++     + A+++  K    +I  D++ N M      D   + +S
Sbjct: 2   MLRSFVIVFIYVLTCLLPTINNTYAADIQTKASEIAI-FDLSSNIMLFEHNIDRKIHLSS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +  +MTLY+ F Y++   + +  +   SK A  Q    ++L+          +  +IT S
Sbjct: 61  MNNLMTLYVAFSYMKPGFVRMEDKYIASKEAWQQGGPSIFLRAGQPVPVRDLLDGIITLS 120

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AND S    E I+GS++ F   M+  A+K+ + ++ + N +GL D NQ T+ARD   L  
Sbjct: 121 ANDASITLAEGIAGSQENFVKEMNQMARKLNLTSSNFTNVTGLLDSNQTTSARDLITLAQ 180

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR-NSGFNIVTSLRY 258
            L  +FP+YY  FS +  ++ N    + N LLN    IDG+    T  +     + S++ 
Sbjct: 181 RLFNDFPEYYHLFSKKDLKFNNIYQKSTNTLLNSDIAIDGMAVKNTDQDDNHGAIISIKK 240

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
               I+ ++ G+  ++E   +   LI       + K
Sbjct: 241 DGRRILLLINGLENNEELLSEVQLLINYVYNDFSTK 276


>gi|312865485|ref|ZP_07725712.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus downei
           F0415]
 gi|311099003|gb|EFQ57220.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus downei
           F0415]
          Length = 411

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 69/339 (20%), Positives = 142/339 (41%), Gaps = 33/339 (9%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTL 86
           I L+     L    ++ A +  A  K+ +I ++    ++   K    P   AS+TK++T+
Sbjct: 6   ISLLMAFSLLFTASLAKADDFDAPAKH-AIAVEATTGKILYEKDASTPDGVASMTKILTV 64

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           Y++++ +   KL  N+++ +S  A         S + +  + Y T ++ + A +  SAN 
Sbjct: 65  YMVYKAIDEGKLSWNSKVKISDYAYDLTTNSEASNVPMDAREY-TVKELVNAALIASANS 123

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQI 188
            + A  E + G E  F  +M  + K+ G+++    NASGL+              D   +
Sbjct: 124 AAIALAEKLGGDEATFVDMMQAQLKQWGIKDAKLVNASGLNNSYLGDHIYPGSKSDDENL 183

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIKTGY 244
            +A+D AI+   L  ++P           ++ N  +   N +L+ M      +DG+KTG 
Sbjct: 184 MSAKDMAIIARHLISDYPDVLDITKKTSEKFGNTDMATFNMMLDGMPYAREGVDGLKTGT 243

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ----ERDQKALELIT----SFLEKKTLKHQ 296
           T  +G + V +       +++VVM    +      R +   +++     +F     +   
Sbjct: 244 TELAGQSFVATSTENGMRVISVVMHADNADNNQYARFEATNKILNYVTYNFQLTNLVVKG 303

Query: 297 QTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           ++++    S    K   +    K  +    KI +    +
Sbjct: 304 ESYKSSKASVIDGKSKTVPAVAKEDFQVVTKIGSDHKPS 342


>gi|229101975|ref|ZP_04232689.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
 gi|228681558|gb|EEL35721.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
          Length = 428

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 79/336 (23%), Positives = 141/336 (41%), Gaps = 35/336 (10%)

Query: 22  IYIQRNIQLMGKI-LFLSIIMISMAS--------ELHAKPKYS-------SIVIDVNKNQ 65
           +  ++ +  +  I LFL   M   A         ++   PK         +  ID     
Sbjct: 2   VNFKKILAFITVISLFLLTPMTLRAETNIGVNPEQVAPPPKEGPNVFSQFAATIDAKTGD 61

Query: 66  MTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK--E 122
           +   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S   ++   
Sbjct: 62  LLYDKNAHHRAFPASVTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSNYQIEFQP 116

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
                    ++ L+  SANDVS A  E I GS + FA +M+ KAK++G  ++ +   +GL
Sbjct: 117 GETVNRNTALMILMVLSANDVSYAIAEHIGGSVENFANMMNEKAKQLGATDSHFVTPNGL 176

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIITNHNKLLN-KMHNIDG 239
           HD N  TT  D A++   ++K +P+  +  + ++       + ++  NK +  +     G
Sbjct: 177 HDPNHYTTPYDIAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSIYFENPYSIG 235

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLEKKTL---- 293
            KTG+T  +   +V       + I+ VVM     +  E  ++  E       K+T+    
Sbjct: 236 GKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMAEYSFGQFTKQTVLDKH 295

Query: 294 -KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
             HQ+T   +    + L+KS  +   K      K I
Sbjct: 296 SWHQKTTYLNKDIDSELEKSAELMLKKDEGKNVKTI 331


>gi|302386416|ref|YP_003822238.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           saccharolyticum WM1]
 gi|302197044|gb|ADL04615.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           saccharolyticum WM1]
          Length = 322

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 67/272 (24%), Positives = 112/272 (41%), Gaps = 25/272 (9%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQS 95
           L I+    +S+  A    ++ V D+   ++   K   E  YPAS+TK MT  I  +Y   
Sbjct: 57  LCIVSEDTSSKDGAVTAEAAAVFDLTDKKVLFAKNPFERLYPASITKTMTALIALKYG-- 114

Query: 96  KKLHLNTQIPVSKTAA--TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
              +L  ++ V+  A       S   +K     T EQ +  L+  S ND   A    I+G
Sbjct: 115 ---NLTDEVTVTGDAVITEAGASLCGIKPGDKLTMEQLLYGLMLPSGNDAGAAIATHIAG 171

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
              +F+ +M+ +A KIG   T + N  GL+D+N  TTA D  ++     K +P++ K  +
Sbjct: 172 GIDQFSQMMNEEAGKIGATGTHFLNPHGLNDENHYTTAYDLYLIFNEALK-YPEFRKIIA 230

Query: 214 IRKFRYR---------NRIITNHNKLL---NKMHN---IDGIKTGYTRNSGFNIV-TSLR 257
             ++            N      N  +    +M     + G KTG T+ +G  ++  S  
Sbjct: 231 TTEYTTTYQDGAGSPVNATWKGTNWYMTGERQMPEGLTVLGGKTGTTKAAGSCLIMGSSD 290

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
                 V VV+  P           ++   +E
Sbjct: 291 SSQREYVTVVLKAPNHAGLYDNMTNILNKIVE 322


>gi|317058712|ref|ZP_07923197.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 3_1_5R]
 gi|313684388|gb|EFS21223.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 3_1_5R]
          Length = 390

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 118/241 (48%), Gaps = 13/241 (5%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           + +V D  +  +   K  D+    AS+TK+MTL + F+ +++ + H + ++ ++K    +
Sbjct: 146 AGLVAD-TRGNIYYSKNIDKKLPMASVTKVMTLLVTFDAIRNGEAHFDDKVVITKDVYNK 204

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGM- 171
             S + +K    FT    I A    SAN+ + A  + I  GS   F   M+ KA+++G+ 
Sbjct: 205 GGSGISMKPGETFTLLDLIRATAIYSANNAAYAVAKHIGKGSIPNFIKKMNKKAREVGVS 264

Query: 172 QNTIYKNASGLH-----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RII 224
           +   Y + +GL      +   I TAR    L +   K +P+Y +   I++ +  N    I
Sbjct: 265 KEISYYSPAGLPTRYTKEPMDIGTARGIYKLSLEAIK-YPEYMEIAGIKQMKIHNGRISI 323

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            N N L+ +   I GIKTGY + + +NI  + +      + V++G  + ++RD   L L+
Sbjct: 324 RNRNHLIGE-EGIYGIKTGYHKEAKYNITVASKDGQREFIVVILGGNSYKDRDNAVLHLL 382

Query: 285 T 285
            
Sbjct: 383 D 383


>gi|160938825|ref|ZP_02086176.1| hypothetical protein CLOBOL_03719 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437788|gb|EDP15548.1| hypothetical protein CLOBOL_03719 [Clostridium bolteae ATCC
           BAA-613]
          Length = 325

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 58/250 (23%), Positives = 107/250 (42%), Gaps = 25/250 (10%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-T 112
           ++ + DV+  +    K+  E  YPAS+TK+MT  +  +        LN ++ V+  A  T
Sbjct: 78  AAALFDVSDRETLYSKEAFERLYPASITKVMTALVAIKNGD-----LNARVVVTDDAVIT 132

Query: 113 QNPSKL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           ++ + L  ++     T EQ +  L+  S ND   A    I+GS  KFA +M+ +A  +G 
Sbjct: 133 ESGATLCGIEPGDTLTLEQLLYGLMLPSGNDAGAAIAVHIAGSIDKFADMMNQEAASLGA 192

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR---------NR 222
             T + N  GL+D +  TTA D  ++     K +P + +      +             +
Sbjct: 193 TGTHFVNPHGLNDPDHYTTAYDLYLIFNEALK-YPVFRQIVGTTSYTANYHDKDSQAVTK 251

Query: 223 IITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVMGMPTSQE 275
                N  + +         + G KTG T  +G+ ++ + R   D   ++VV+   +   
Sbjct: 252 TWKGGNWFMTRERETPEGLTVFGGKTGTTNAAGYCLIMATRDQNDKEYISVVLKSDSRPG 311

Query: 276 RDQKALELIT 285
                  +I+
Sbjct: 312 LYDNMTNIIS 321


>gi|183981214|ref|YP_001849505.1| penicillin-binding protein DacC [Mycobacterium marinum M]
 gi|183174540|gb|ACC39650.1| penicillin-binding protein DacC [Mycobacterium marinum M]
          Length = 415

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 54/267 (20%), Positives = 101/267 (37%), Gaps = 19/267 (7%)

Query: 37  LSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFE 91
           L    I  A +    P      + +V D++   +   +    R+ PAS+ K++   +  +
Sbjct: 84  LGGCGIIAAPDTPPVPGDVSAEAWLVGDLDSGAIIAARDPHARHRPASIIKVLVAMVSIK 143

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            L   K      +P +   +    +K+ +     +T  Q +  L+  S ND + A    +
Sbjct: 144 ELNQNKA-----VPGTNDDSAAEGTKVGVNAGGMYTVNQLLHGLLMHSGNDAAHALAIQL 198

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            G +      ++  A K+G ++T     SGL      T+A D  +      +N P +   
Sbjct: 199 GGMQTA-LEKINMLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQN-PIFADI 256

Query: 212 FSIRKFRYRNRI------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            + R F +          + N N LL       G KTGYT ++G   V +  +    + A
Sbjct: 257 VATRTFDFPGHGEHPGYELENDNHLLYNYPGALGGKTGYTDDAGQTFVGAANHNGRRLFA 316

Query: 266 VVM-GMPTSQERDQKALELITSFLEKK 291
           V++ G        ++A  L+       
Sbjct: 317 VLLHGTRQPIAPWEQAAHLLDYGFSTA 343


>gi|58617588|ref|YP_196787.1| penicillin-binding protein dacF precursor [Ehrlichia ruminantium
           str. Gardel]
 gi|58417200|emb|CAI28313.1| Penicillin-binding protein dacF precursor [Ehrlichia ruminantium
           str. Gardel]
          Length = 290

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 69/276 (25%), Positives = 129/276 (46%), Gaps = 6/276 (2%)

Query: 24  IQRNIQLMGKILFLSIIMI---SMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           + R+  ++   +   ++     + A+++  K    +I  D++ N M      D   + +S
Sbjct: 2   MLRSFVIVFIYVLTCLLPTINNTYAADIQTKASEIAI-FDLSSNIMLFEHNIDRKIHLSS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           +  +MTLY+ F Y++   + +  +   SK A  Q    ++L+          +  +IT S
Sbjct: 61  MNNLMTLYVAFSYMKPGFVRMEDKYIASKEAWQQGGPSIFLRAGQPVPVRDLLDGIITLS 120

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           AND S    E I+GS++ F   M+  A+K+ + ++ + N +GL D NQ T+ARD   L  
Sbjct: 121 ANDASITLAEGIAGSQENFVKEMNQMARKLNLTSSNFTNVTGLLDSNQTTSARDLITLAQ 180

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR-NSGFNIVTSLRY 258
            L  +FP+YY  FS +  ++ N    + N LLN    IDG+    T  +     + S++ 
Sbjct: 181 RLFNDFPEYYHLFSKKDLKFNNIYQKSTNTLLNSDIAIDGMAVKNTDQDDNHGAIISIKK 240

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
               I+ ++ G+  ++E   +   LI       + K
Sbjct: 241 DGRRILLLINGLENNEELLSEVQLLINYVYNDFSTK 276


>gi|315917196|ref|ZP_07913436.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313691071|gb|EFS27906.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 388

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 118/241 (48%), Gaps = 13/241 (5%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           + +V D  +  +   K  D+    AS+TK+MTL + F+ +++ + H + ++ ++K    +
Sbjct: 144 AGLVAD-TRGNIYYSKNIDKKLPMASVTKVMTLLVTFDAIRNGEAHFDDKVVITKDVYNK 202

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGM- 171
             S + +K    FT    I A    SAN+ + A  + I  GS   F   M+ KA+++G+ 
Sbjct: 203 GGSGISMKPGEKFTLLDLIRATAIYSANNAAYAVAKHIGKGSIPNFIKKMNKKAREVGVS 262

Query: 172 QNTIYKNASGLH-----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RII 224
           +   Y + +GL      +   I TAR    L +   K +P+Y +   I++ +  N    I
Sbjct: 263 KEISYYSPAGLPTRYTKEPMDIGTARGIYKLSLEAIK-YPEYMEIAGIKQMKIHNGRISI 321

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            N N L+ +   I GIKTGY + + +NI  + +      + V++G  + ++RD   L L+
Sbjct: 322 RNRNHLIGE-EGIYGIKTGYHKEAKYNITVASKDGQREFIVVILGGNSYKDRDNAVLHLL 380

Query: 285 T 285
            
Sbjct: 381 D 381


>gi|315172967|gb|EFU16984.1| putative beta-lactamase [Enterococcus faecalis TX1346]
          Length = 493

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 128/298 (42%), Gaps = 37/298 (12%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQDE 73
           L    G+ + Q  +    + +  + I   M + L A     ++IV+D +  ++   +Q +
Sbjct: 22  LVVSCGAFFAQPTVTHAEEDI--TAIAKKMGTTLKADGIPKAAIVVDADSGEILWSQQPD 79

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT----- 127
               PAS+ K+MT+Y+ FE ++  K  ++T +  ++     + SK+Y       T     
Sbjct: 80  LAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DVDISKIYAISNNKITLGVAY 137

Query: 128 -TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL--- 182
              + +  +   S+N  +      ISG++   F  LM+ KA ++GM NT Y N SG    
Sbjct: 138 PVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQAS 197

Query: 183 ------------HDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIIT 225
                        + + ++TARD A L     KN+P+  +                    
Sbjct: 198 AFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEETFE 257

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            +N  L         +DG+KTG +   GFN + +++  D  ++ V++G+   Q +D +
Sbjct: 258 AYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDGE 315


>gi|78186778|ref|YP_374821.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium luteolum DSM
           273]
 gi|78166680|gb|ABB23778.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium luteolum DSM
           273]
          Length = 301

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 70/278 (25%), Positives = 124/278 (44%), Gaps = 20/278 (7%)

Query: 24  IQRNIQLMGKILFLSIIM-ISMASELHA-KPKY--SSIVIDVNKNQMTGFKQDEPR-YPA 78
           ++R    +  + F +++  +S +S   A +P    S IV D+  +++   K       PA
Sbjct: 1   MKRFGLSLAALFFAALVSQLSFSSPAEASRPPVIDSYIVKDLGYSRVFMQKDTSRLIRPA 60

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           SLTK++T  I  E  +     L+  + +S  A    P+K   +          + A +  
Sbjct: 61  SLTKILTAVIALESGK-----LDQVVVISPEATGVEPTKAGFRPGDRILLLDLVKASMVN 115

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK---NQITTARDQA 195
           S+ND + A    +SGS +KF   M+ +A+ IGM+++ + N +G          +TA D  
Sbjct: 116 SSNDAAFAIAIHLSGSVEKFVRAMNYRARAIGMKSSTFTNPAGFDTGRYTGNYSTAEDLL 175

Query: 196 ILGILLRKN--FPQYYKYFSI---RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
            L      N  F +     SI    K   R  ++  HNKLL +     GIKTG+TR++G 
Sbjct: 176 ALTEYAIHNPLFNEITMLESIVVRDKRSGRYYLLRTHNKLLARYPYAVGIKTGFTRSAGK 235

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            ++   R ++  ++ V++      +R   A E+     
Sbjct: 236 CLIARARKENRDMLLVMLNAKG--DRWTMAEEMFEKAF 271


>gi|169630760|ref|YP_001704409.1| penicillin-binding protein DacB1 [Mycobacterium abscessus ATCC
           19977]
 gi|169242727|emb|CAM63755.1| Probable penicillin-binding protein DacB1 [Mycobacterium abscessus]
          Length = 429

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 98/253 (38%), Gaps = 22/253 (8%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S ++ D+N   +   K    R+ PAS+ K+    +  E +    L+LN  +  ++  A
Sbjct: 114 AESWLIADLNTGNVVAAKDPHARHRPASVIKV---LVAMEAIN--NLNLNQAVVGTQEDA 168

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +++ +     +T  Q +  L+  S ND + A    + G ++     +++ A+K+G 
Sbjct: 169 NSEGTRVGVDVGGTYTVRQLLTGLLMNSGNDAAHALAVQLGGMDET-VAKINDMAQKLGA 227

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-------- 223
           ++T     SGL      T+A D  +       + P +    S  K  +            
Sbjct: 228 RDTRAATPSGLDGPGMSTSAYDLGLFYKYAFAD-PTFADLVSAPKATFPGHPAKPGERDD 286

Query: 224 -----ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM-GMPTSQERD 277
                +TN NKLL       G KTGYT ++    V +       +V  ++ G        
Sbjct: 287 HPAYEMTNDNKLLYNYPGALGGKTGYTDDAQQTFVGAAERDGRRLVVTMLRGTRLPIAPW 346

Query: 278 QKALELITSFLEK 290
           ++A  L+      
Sbjct: 347 EQAAHLLDYGFST 359


>gi|315284191|ref|ZP_07872092.1| beta-lactamase [Listeria marthii FSL S4-120]
 gi|313612161|gb|EFR86402.1| beta-lactamase [Listeria marthii FSL S4-120]
          Length = 269

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 115/241 (47%), Gaps = 7/241 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+ V  V   +M   K  +   P ASLTK+MT +++ E + +KKL  + Q+ + +   
Sbjct: 31  AQSAAVFSVENGKMLYEKNADKVMPIASLTKLMTAFLVLEAVDNKKLSWDEQLDLVRLDD 90

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S   + +K  ++      A++  SAND +   G+ + G    F   M+N+AKK+G+
Sbjct: 91  PSAVSLYAITQKRTWSVRDLYSAMLVMSANDAAETLGDRLEG--ASFPQKMNNEAKKLGL 148

Query: 172 QN-TIYKNASGLHDKNQI--TTARDQAILGILLRKNFPQYYKYFSIRK-FRYRNRIITNH 227
            N T + +ASGL    ++  +T +D  +L   L     +  +  S           + + 
Sbjct: 149 SNKTKFVSASGLDVDGEMAVSTTKDLFLLSSKLISTHSEVLETTSKSSIITEEGAKLEST 208

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           N L+  +  +DG+KTG+T  +G+  + +       ++++V+   T+++R +   +L+   
Sbjct: 209 NDLIGAIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDTDTAEKRFKDTEQLMKVG 268

Query: 288 L 288
            
Sbjct: 269 F 269


>gi|145512197|ref|XP_001442015.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124409287|emb|CAK74618.1| unnamed protein product [Paramecium tetraurelia]
          Length = 302

 Score =  192 bits (489), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 71/272 (26%), Positives = 122/272 (44%), Gaps = 31/272 (11%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKL-HL 100
           S+A  L AK   S IV+D N   +   + +++ R  AS+TK+MT Y++    ++  +   
Sbjct: 36  SLAPRLTAK---SWIVVDSNSGDVLYAYNENQRREIASITKIMTFYVVLSMCKTMNVQTN 92

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF---------- 150
           NT   VS  A+    +   L +    + +     L+  S ND +  F E           
Sbjct: 93  NTYAEVSLQASLVGGTTANLLKGDILSIDDLFYGLMLPSGNDAAMTFAENFGIYAMYQNK 152

Query: 151 ISGSEK--KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
           I G+     F   M+NKA+++ M  T Y N  GL++KN +++A D A L   L K+   +
Sbjct: 153 IKGNNPIIYFIQEMNNKARELRMTQTTYANPHGLNNKNNLSSAYDVAKLCNQLLKD--DF 210

Query: 209 YKYFSIRKFRY----------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
           +K     K  +          R+ +  N NKLL       GIKTG T  +G  + +  + 
Sbjct: 211 FKKVVNTKIHFCTIQDEEGFTRDVMWENTNKLL--YQGFRGIKTGNTSVAGPCLASYYQS 268

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            +     V++G    ++R  + ++L+   L +
Sbjct: 269 NNRSFTIVILGCRNQEDRWSETMQLVQWCLSQ 300


>gi|21323446|dbj|BAB98073.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium glutamicum
           ATCC 13032]
          Length = 379

 Score =  192 bits (489), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 99/239 (41%), Gaps = 14/239 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + +V D++  ++   K    RY PAS+ K++   +  +     +L+  T +  +  AA
Sbjct: 70  ASAWMVFDIDSGEIIAAKDPHGRYRPASIIKVLLSLVAID-----ELNPTTVVTGTMEAA 124

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S++ + E   +T +Q +  L+  S ND +    + + G +      ++  AK++G 
Sbjct: 125 NIEGSRVGVGEGGQYTVDQLLHGLLLASGNDAAYLLAQELGGDQAT-LEKVNALAKELGT 183

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN------RIIT 225
           Q+T     SGL      T+A D +++     +N P +    S     +          + 
Sbjct: 184 QDTFVATYSGLDAPGMSTSAYDMSLIYQHAWQN-PVFESIISTDHIDFPGWGDNEGFQVW 242

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L     +  G KTGYT ++    V  L      + AV++    S  R  +   L+
Sbjct: 243 NDNALFMNDPDGIGGKTGYTDDANHTFVGGLDRGGRRLAAVLLDSTVSDIRPWEQARLL 301


>gi|255026482|ref|ZP_05298468.1| hypothetical protein LmonocytFSL_09353 [Listeria monocytogenes FSL
           J2-003]
          Length = 272

 Score =  192 bits (489), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 118/243 (48%), Gaps = 7/243 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++ V  V   +    +  +   P ASLTK+MT +++ E + + +L  + ++ + +   
Sbjct: 31  ANAAAVYSVENGEALYEQNADKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLNLVRLDD 90

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S   + +K  ++      A++T SAND +   G+ + G    F   M+N+AKK+GM
Sbjct: 91  PSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLGDRLDG--ADFPKEMNNQAKKLGM 148

Query: 172 QN-TIYKNASGLHDKNQ--ITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNH 227
            + T + +ASGL    +  ++T +D  +L   L    P+  +  S       +   + + 
Sbjct: 149 SSKTTFVSASGLDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDKGAKLEST 208

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           N LL  +  +DG+KTG+T  +G+  + +       ++++V+   T+++R +   +L+   
Sbjct: 209 NDLLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVG 268

Query: 288 LEK 290
            ++
Sbjct: 269 FKE 271


>gi|257879976|ref|ZP_05659629.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
           1,230,933]
 gi|257893087|ref|ZP_05672740.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
           1,231,408]
 gi|257814204|gb|EEV42962.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
           1,230,933]
 gi|257829466|gb|EEV56073.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
           1,231,408]
          Length = 435

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 126/311 (40%), Gaps = 35/311 (11%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQ 94
           FL  + +  A +       ++  +D    ++   +  E     AS+TK++ LYI+ + ++
Sbjct: 22  FLPAVAV-QAEDTFKVNAKAAFAVDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQVK 80

Query: 95  SKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             KL    ++ +S  A     T + S + L ++  +T ++   + I +SAN    A  E 
Sbjct: 81  EGKLSWGDKVSISDYAENLSITPDLSNVPLHKENTYTVKELFDSAIIQSANASMVALAEK 140

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAI 196
           ISGSE KF   M  + K  G+++    NASGL+              +     +A+D AI
Sbjct: 141 ISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVAI 200

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIIT-----NHNKLLNKM----HNIDGIKTGYTRN 247
           +   L  +FP+     S     +     +     N N +L         +DG+KTG T  
Sbjct: 201 VARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTEL 260

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTLKH--QQTHRK 301
           +G   V ++   D  I+ VV+           R  +   L+    +  + K   +     
Sbjct: 261 AGACFVGTITKNDQRIITVVLNADGHAENPSARFNETDRLMDYCYDNWSEKELGKANASI 320

Query: 302 DNLSSTSLKKS 312
            +L +  +K  
Sbjct: 321 PSLKTIDVKDG 331


>gi|307292145|ref|ZP_07572011.1| putative beta-lactamase [Enterococcus faecalis TX0411]
 gi|306496798|gb|EFM66349.1| putative beta-lactamase [Enterococcus faecalis TX0411]
          Length = 493

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 140/348 (40%), Gaps = 54/348 (15%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQDE 73
           L    G+ + Q  +    + +  + I   M + L A     ++IV+D +  ++   +Q +
Sbjct: 22  LVVSCGAFFAQPTVTHAEEDI--TAIAKKMGTTLKADGIPKAAIVVDADSGEILWSQQPD 79

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT----- 127
               PAS+ K+MT+Y+ FE ++  K  ++T +  ++     + SK+Y       T     
Sbjct: 80  LAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DVDISKIYAISNNKITLGVAY 137

Query: 128 -TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL--- 182
              + +  +   S+N  +      ISG++   F  LM+ KA ++GM NT Y N SG    
Sbjct: 138 PVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQAS 197

Query: 183 ------------HDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIIT 225
                        + + ++TARD A L     KN+P+  +                    
Sbjct: 198 AFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEETFE 257

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ------E 275
            +N  L         +DG+KTG +   GFN + +++  D  ++ V++G+   Q      E
Sbjct: 258 AYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDGEYE 317

Query: 276 RDQKALELITSFLEK-----------KTLKHQQTHRKDNLSSTSLKKS 312
           R      L+                 +T+ H++    ++L     K S
Sbjct: 318 RHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGVIPKGS 365


>gi|224531645|ref|ZP_03672277.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia valaisiana
           VS116]
 gi|224511110|gb|EEF81516.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia valaisiana
           VS116]
          Length = 401

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 72/307 (23%), Positives = 126/307 (41%), Gaps = 30/307 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             S +++D +  ++   K+      PASLTK++T+Y      + + + L   +P+S  A 
Sbjct: 40  AKSIVLMDFDTKRILYSKKPNLVFPPASLTKIVTIYTALIEAEKRNIKLKNIVPISDAAS 99

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
              A  N S ++L++      E+ +  L   S ND + A  EF+ G    F  LM+  A 
Sbjct: 100 YYNAPLNSSLMFLEKGQIVNFEEILKGLSVSSGNDAAIAIAEFVVGDVNSFVNLMNINAL 159

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------- 220
            +G+ N  +   SG  ++N   TA D A       + F       S+  F Y        
Sbjct: 160 NLGLFNMHFVEPSGYSNEN-KITALDMAFFAKSYIEKFKFMLNIHSLEYFVYPKSKNLGI 218

Query: 221 -------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP-- 271
                  N    N N L+++    DG+KTGY R SG NI+ +    +  ++AVV+G+   
Sbjct: 219 TLSSKFLNLKQKNANLLISEYPYSDGLKTGYIRESGLNIIATALKGERRLIAVVLGVKKG 278

Query: 272 ----TSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTY----S 323
                 + R   A  L      + +        ++ + + ++    +  K    Y     
Sbjct: 279 INGSGEKIRALIAKNLFEYGFNEYSKFPLIVKLQEKVYNGTVDTVALFSKEPFYYVLTKD 338

Query: 324 QFKKIDA 330
           +F KI+ 
Sbjct: 339 EFDKINI 345


>gi|229547447|ref|ZP_04436172.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis TX1322]
 gi|256854799|ref|ZP_05560163.1| DD-carboxypeptidase [Enterococcus faecalis T8]
 gi|229307479|gb|EEN73466.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis TX1322]
 gi|256710359|gb|EEU25403.1| DD-carboxypeptidase [Enterococcus faecalis T8]
 gi|315028349|gb|EFT40281.1| beta-lactamase [Enterococcus faecalis TX4000]
          Length = 493

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 128/298 (42%), Gaps = 37/298 (12%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQ-D 72
           L    G+ + Q  +    + +  + I   M + L A     ++IV+D +  ++   +Q D
Sbjct: 22  LVVSCGAFFAQPTVTHAEEDI--TAIAKKMGTTLKADGIPKAAIVVDADSGEILWSQQPD 79

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT----- 127
               PAS+ K+MT+Y+ FE ++  K  ++T +  ++     + SK+Y       T     
Sbjct: 80  SAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DVDISKIYAISNNKITLGVAY 137

Query: 128 -TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL--- 182
              + +  +   S+N  +      ISG++   F  LM+ KA ++GM NT Y N SG    
Sbjct: 138 PVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQAS 197

Query: 183 ------------HDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIIT 225
                        + + ++TARD A L     KN+P+  +                    
Sbjct: 198 AFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEETFE 257

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            +N  L         +DG+KTG +   GFN + +++  D  ++ V++G+   Q +D +
Sbjct: 258 AYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDGE 315


>gi|257898083|ref|ZP_05677736.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium Com15]
 gi|257835995|gb|EEV61069.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium Com15]
          Length = 435

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 68/311 (21%), Positives = 126/311 (40%), Gaps = 35/311 (11%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQ 94
           FL  + +  A +       ++  +D    ++   +  E     AS+TK++ LYI+ + ++
Sbjct: 22  FLPAVAV-QAEDTFKVNAKAAFAVDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQVK 80

Query: 95  SKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             KL  + ++ +S  A     T + S + L ++  +T ++   + I +SAN    A  E 
Sbjct: 81  EGKLSWDDKVSISDYAENLSVTPDLSNVPLHKENTYTVKELFDSAIIQSANASMVALAEK 140

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD--------------KNQITTARDQAI 196
           ISGSE KF   M  + K   +++    NASGL++                   +A+D AI
Sbjct: 141 ISGSEAKFTERMKEQLKDWDIKDATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVAI 200

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIIT-----NHNKLLNKM----HNIDGIKTGYTRN 247
           +   L  +FP+     S     +     +     N N +L         +DG+KTG T  
Sbjct: 201 VARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTEL 260

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTLKH--QQTHRK 301
           +G   V ++   D  I+ VV+           R  +   L+    +  + K   +     
Sbjct: 261 AGACFVGTITKNDQRIITVVLNADGHAENPSARFNETARLMDYCYDNWSEKELGKANASI 320

Query: 302 DNLSSTSLKKS 312
            +L +  +K  
Sbjct: 321 PSLKTIDVKDG 331


>gi|329576780|gb|EGG58273.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
           TX1467]
          Length = 493

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 140/348 (40%), Gaps = 54/348 (15%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQDE 73
           L    G+ + Q  +    + +  + I   M + L A     ++IV+D +  ++   +Q +
Sbjct: 22  LVVSCGAFFAQPTVTHAEEDI--TAIAKKMGTTLKADGIPEAAIVVDADSGEILWSQQPD 79

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT----- 127
               PAS+ K+MT+Y+ FE ++  K  ++T +  ++     + SK+Y       T     
Sbjct: 80  LAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DVDISKIYAISNNKITLGVAY 137

Query: 128 -TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL--- 182
              + +  +   S+N  +      ISG++   F  LM+ KA ++GM NT Y N SG    
Sbjct: 138 PVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQAS 197

Query: 183 ------------HDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIIT 225
                        + + ++TARD A L     KN+P+  +                    
Sbjct: 198 AFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEETFE 257

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ------E 275
            +N  L         +DG+KTG +   GFN + +++  D  ++ V++G+   Q      E
Sbjct: 258 AYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDGEYE 317

Query: 276 RDQKALELITSFLEK-----------KTLKHQQTHRKDNLSSTSLKKS 312
           R      L+                 +T+ H++    ++L     K S
Sbjct: 318 RHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGVIPKGS 365


>gi|223933668|ref|ZP_03625645.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus suis
           89/1591]
 gi|330833493|ref|YP_004402318.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus suis ST3]
 gi|223897661|gb|EEF64045.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus suis
           89/1591]
 gi|329307715|gb|AEB82131.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus suis ST3]
          Length = 413

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 60/335 (17%), Positives = 142/335 (42%), Gaps = 32/335 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTK 82
           +++ +  +  ++ L      + +E  +     +I ++V+  ++   +  E +   AS++K
Sbjct: 1   MRKFLLTLTTVIALFFTSTPILAEDFSVAAKHAIAVEVSSGKILYEQDAETKASIASISK 60

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALITR 138
            +++Y+++E L   ++ L+T + +S    +       S + L  ++Y +    + A +  
Sbjct: 61  TLSIYLVYEALAKGEITLDTMVDISDYPYSLTSNTELSNVNLDARSY-SVRDLLNASLIT 119

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN------------ 186
           S+N    A  E I+GSE  F   M  K ++ G+ +T   N SGL + +            
Sbjct: 120 SSNSAIIALAEKIAGSEAAFVDRMKAKVQEWGITDTKIVNVSGLDNTDLGENIYPGSSPE 179

Query: 187 --QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGI 240
              + +A D AI+   L  ++PQ     S+  + +      + N++L+        +DG+
Sbjct: 180 DVNMFSALDVAIIARRLILDYPQVLDITSLNAYDFGGYTYYSTNQMLSDGTHARGGVDGL 239

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVM----GMPTSQERDQKALELITSFLEKKTL--- 293
           KTG + ++G + + + +     I+ VV+    G+ + + R     +L+       +L   
Sbjct: 240 KTGTSNSAGSSFLATTQQAGMRIITVVLNANDGLTSPENRFVATNDLMNYVYSNFSLVTL 299

Query: 294 -KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
            K  +      +   + +K           +  ++
Sbjct: 300 VKKGEAFEDSKIKVFNGEKETSPVVAAADLTVVQR 334


>gi|307273627|ref|ZP_07554855.1| putative beta-lactamase [Enterococcus faecalis TX0855]
 gi|306509640|gb|EFM78682.1| putative beta-lactamase [Enterococcus faecalis TX0855]
          Length = 493

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 140/348 (40%), Gaps = 54/348 (15%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQDE 73
           L    G+ + Q  +    + +  + I   M + L A     ++IV+D +  ++   +Q +
Sbjct: 22  LVVSCGAFFAQPTVTHAEEDI--TAIAKKMGTTLKADGIPKAAIVVDADSGEILWSQQPD 79

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT----- 127
               PAS+ K+MT+Y+ FE ++  K  ++T +  ++     + SK+Y       T     
Sbjct: 80  LAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DVDISKIYAISNNKITLGVAY 137

Query: 128 -TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL--- 182
              + +  +   S+N  +      ISG++   F  LM+ KA ++GM NT Y N SG    
Sbjct: 138 PVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQAS 197

Query: 183 ------------HDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIIT 225
                        + + ++TARD A L     KN+P+  +                    
Sbjct: 198 AFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEETFE 257

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ------E 275
            +N  L         +DG+KTG +   GFN + +++  D  ++ V++G+   Q      E
Sbjct: 258 AYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDGEYE 317

Query: 276 RDQKALELITSFLEK-----------KTLKHQQTHRKDNLSSTSLKKS 312
           R      L+                 +T+ H++    ++L     K S
Sbjct: 318 RHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGVIPKGS 365


>gi|256962967|ref|ZP_05567138.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis
           HIP11704]
 gi|256953463|gb|EEU70095.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis
           HIP11704]
          Length = 475

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 140/348 (40%), Gaps = 54/348 (15%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQDE 73
           L    G+ + Q  +    + +  + I   M + L A     ++IV+D +  ++   +Q +
Sbjct: 4   LVVSCGAFFAQPTVTHAEEDI--TAIAKKMGTTLKADGIPKAAIVVDADSGEILWSQQPD 61

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT----- 127
               PAS+ K+MT+Y+ FE ++  K  ++T +  ++     + SK+Y       T     
Sbjct: 62  LAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DVDISKIYAISNNKITLGVAY 119

Query: 128 -TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL--- 182
              + +  +   S+N  +      ISG++   F  LM+ KA ++GM NT Y N SG    
Sbjct: 120 PVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQAS 179

Query: 183 ------------HDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIIT 225
                        + + ++TARD A L     KN+P+  +                    
Sbjct: 180 AFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEETFE 239

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ------E 275
            +N  L         +DG+KTG +   GFN + +++  D  ++ V++G+   Q      E
Sbjct: 240 AYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDGEYE 299

Query: 276 RDQKALELITSFLEK-----------KTLKHQQTHRKDNLSSTSLKKS 312
           R      L+                 +T+ H++    ++L     K S
Sbjct: 300 RHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGVIPKGS 347


>gi|315031813|gb|EFT43745.1| putative beta-lactamase [Enterococcus faecalis TX0017]
          Length = 493

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 128/298 (42%), Gaps = 37/298 (12%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQDE 73
           L    G+ + Q  +    + +  + I   M + L A     ++IV+D +  ++   +Q +
Sbjct: 22  LVVSCGAFFAQPTVTHAEEDI--TAIAKKMGTTLKADGIPKAAIVVDADSGEILWSQQPD 79

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT----- 127
               PAS+ K+MT+Y+ FE ++  K  ++T +  ++     + SK+Y       T     
Sbjct: 80  LAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DVDISKIYAISNNKITLGVAY 137

Query: 128 -TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL--- 182
              + +  +   S+N  +      ISG++   F  LM+ KA ++GM NT Y N SG    
Sbjct: 138 PVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQAS 197

Query: 183 ------------HDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIIT 225
                        + + ++TARD A L     KN+P+  +                    
Sbjct: 198 AFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEETFE 257

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            +N  L         +DG+KTG +   GFN + +++  D  ++ V++G+   Q +D +
Sbjct: 258 AYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDGE 315


>gi|225419739|ref|ZP_03762042.1| hypothetical protein CLOSTASPAR_06077 [Clostridium asparagiforme
           DSM 15981]
 gi|225041629|gb|EEG51875.1| hypothetical protein CLOSTASPAR_06077 [Clostridium asparagiforme
           DSM 15981]
          Length = 455

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 72/326 (22%), Positives = 126/326 (38%), Gaps = 47/326 (14%)

Query: 1   MLQQKIQSSAKKTFLTYPY--GSIYIQRNIQLMGKILFLSIIMISMASELHAKP------ 52
           +++ K+  +    FL       S  +  +  L  ++  LS   +    EL A        
Sbjct: 132 IMRSKLLGTGAALFLAVSLAGCSAGLSGSYSLEERMPVLSAPTVLSEEELFAPAFARDLC 191

Query: 53  --------------KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKK 97
                           ++ V D++       K   E  YPAS TK+MT  +  +Y     
Sbjct: 192 VVGDEQSYADDSVTSEAAAVFDLDDCSTIYSKNAFERLYPASTTKVMTALVAIKYG---- 247

Query: 98  LHLNTQIPVSKTAA--TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
            +L  ++ V++ A       +   +K     T EQ +  L+  S ND   A    ++GS 
Sbjct: 248 -NLADEVTVTEDAVITEAGATLAGIKPGDKLTMEQLLYGLMLPSGNDAGAAIAVHMAGSI 306

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           +KFA +M+ +A+++G   T + N  GL+D N  TTA D  ++     K  P + K     
Sbjct: 307 EKFADMMNEEARRLGATGTHFMNPHGLNDPNHYTTAYDLYLIFNEALKQ-PMFRKITGST 365

Query: 216 KFRYRNR---------IITNHNKLL---NKMHN---IDGIKTGYTRNSGFNIVTSLRYK- 259
            +    R              N  +    K  +   + G KTG T+ +G+ +V + R   
Sbjct: 366 AYTANYRGADGKTVSKTWKGGNWFMTGERKTPDGLTVFGGKTGTTKAAGYCLVMASRDDE 425

Query: 260 DDPIVAVVMGMPTSQERDQKALELIT 285
           D   ++VVM   +          +I+
Sbjct: 426 DRGYISVVMKADSRPGLYDNMTNIIS 451


>gi|19551910|ref|NP_599912.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium glutamicum
           ATCC 13032]
 gi|62389569|ref|YP_224971.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium glutamicum
           ATCC 13032]
 gi|41324903|emb|CAF19385.1| D-ALANYL-D-ALANINE CARBOXYPEPTIDASE [Corynebacterium glutamicum
           ATCC 13032]
          Length = 436

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 99/239 (41%), Gaps = 14/239 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + +V D++  ++   K    RY PAS+ K++   +  +     +L+  T +  +  AA
Sbjct: 127 ASAWMVFDIDSGEIIAAKDPHGRYRPASIIKVLLSLVAID-----ELNPTTVVTGTMEAA 181

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S++ + E   +T +Q +  L+  S ND +    + + G +      ++  AK++G 
Sbjct: 182 NIEGSRVGVGEGGQYTVDQLLHGLLLASGNDAAYLLAQELGGDQAT-LEKVNALAKELGT 240

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN------RIIT 225
           Q+T     SGL      T+A D +++     +N P +    S     +          + 
Sbjct: 241 QDTFVATYSGLDAPGMSTSAYDMSLIYQHAWQN-PVFESIISTDHIDFPGWGDNEGFQVW 299

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L     +  G KTGYT ++    V  L      + AV++    S  R  +   L+
Sbjct: 300 NDNALFMNDPDGIGGKTGYTDDANHTFVGGLDRGGRRLAAVLLDSTVSDIRPWEQARLL 358


>gi|29377583|ref|NP_816737.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis V583]
 gi|227554548|ref|ZP_03984595.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis HH22]
 gi|229548016|ref|ZP_04436741.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis ATCC
           29200]
 gi|312905434|ref|ZP_07764548.1| putative beta-lactamase [Enterococcus faecalis TX0635]
 gi|312953223|ref|ZP_07772069.1| putative beta-lactamase [Enterococcus faecalis TX0102]
 gi|12188896|emb|CAC21495.1| DD-carboxypeptidase [Enterococcus faecalis]
 gi|29345050|gb|AAO82807.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis V583]
 gi|227176346|gb|EEI57318.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis HH22]
 gi|229306892|gb|EEN72888.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis ATCC
           29200]
 gi|310628840|gb|EFQ12123.1| putative beta-lactamase [Enterococcus faecalis TX0102]
 gi|310631163|gb|EFQ14446.1| putative beta-lactamase [Enterococcus faecalis TX0635]
 gi|315152792|gb|EFT96808.1| putative beta-lactamase [Enterococcus faecalis TX0031]
 gi|315159373|gb|EFU03390.1| putative beta-lactamase [Enterococcus faecalis TX0312]
 gi|315161196|gb|EFU05213.1| putative beta-lactamase [Enterococcus faecalis TX0645]
 gi|315573276|gb|EFU85467.1| putative beta-lactamase [Enterococcus faecalis TX0309B]
 gi|315577112|gb|EFU89303.1| putative beta-lactamase [Enterococcus faecalis TX0630]
 gi|315581150|gb|EFU93341.1| putative beta-lactamase [Enterococcus faecalis TX0309A]
 gi|323479056|gb|ADX78495.1| D-alanyl-D-alanine carboxypeptidase family protein [Enterococcus
           faecalis 62]
          Length = 493

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 128/298 (42%), Gaps = 37/298 (12%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQDE 73
           L    G+ + Q  +    + +  + I   M + L A     ++IV+D +  ++   +Q +
Sbjct: 22  LVVSCGAFFAQPTVTHAEEDI--TAIAKKMGTTLKADGIPKAAIVVDADSGEILWSQQPD 79

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT----- 127
               PAS+ K+MT+Y+ FE ++  K  ++T +  ++     + SK+Y       T     
Sbjct: 80  LAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DVDISKIYAISNNKITLGVAY 137

Query: 128 -TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL--- 182
              + +  +   S+N  +      ISG++   F  LM+ KA ++GM NT Y N SG    
Sbjct: 138 PVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQAS 197

Query: 183 ------------HDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIIT 225
                        + + ++TARD A L     KN+P+  +                    
Sbjct: 198 AFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEETFE 257

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            +N  L         +DG+KTG +   GFN + +++  D  ++ V++G+   Q +D +
Sbjct: 258 AYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDGE 315


>gi|293385132|ref|ZP_06630958.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
           R712]
 gi|293389105|ref|ZP_06633577.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
           S613]
 gi|312906684|ref|ZP_07765684.1| putative beta-lactamase [Enterococcus faecalis DAPTO 512]
 gi|312910854|ref|ZP_07769690.1| putative beta-lactamase [Enterococcus faecalis DAPTO 516]
 gi|291077609|gb|EFE14973.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
           R712]
 gi|291081573|gb|EFE18536.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
           S613]
 gi|310627332|gb|EFQ10615.1| putative beta-lactamase [Enterococcus faecalis DAPTO 512]
 gi|311288877|gb|EFQ67433.1| putative beta-lactamase [Enterococcus faecalis DAPTO 516]
          Length = 493

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 128/298 (42%), Gaps = 37/298 (12%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQDE 73
           L    G+ + Q  +    + +  + I   M + L A     ++IV+D +  ++   +Q +
Sbjct: 22  LVVSCGAFFAQPTVTHAEEDI--TAIAKKMGTTLKADGIPKAAIVVDADSGEILWSQQPD 79

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT----- 127
               PAS+ K+MT+Y+ FE ++  K  ++T +  ++     + SK+Y       T     
Sbjct: 80  LAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DVDISKIYAISNNKITLGVAY 137

Query: 128 -TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL--- 182
              + +  +   S+N  +      ISG++   F  LM+ KA ++GM NT Y N SG    
Sbjct: 138 PVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQAS 197

Query: 183 ------------HDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIIT 225
                        + + ++TARD A L     KN+P+  +                    
Sbjct: 198 AFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEETFE 257

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            +N  L         +DG+KTG +   GFN + +++  D  ++ V++G+   Q +D +
Sbjct: 258 AYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDGE 315


>gi|317051485|ref|YP_004112601.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfurispirillum
           indicum S5]
 gi|316946569|gb|ADU66045.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfurispirillum
           indicum S5]
          Length = 341

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 125/243 (51%), Gaps = 10/243 (4%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           + IV+D N+ ++   K   E    ASLTK+  +  + + +Q   L  + ++  S  ++  
Sbjct: 96  AIIVVDANRQEIVYAKNLHEVMPIASLTKVFLMEELLDRIQQGALTFDKELRASTRSSLI 155

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA-ILMSNKAKKIGMQ 172
             S++YL+E    T EQ   A +  SAND +   GE I G +   A  L++ KA+ +G++
Sbjct: 156 GGSRVYLREHENTTIEQLAKATMIHSANDAAYLLGEVIGGGDANHAAQLLTAKAQTLGLK 215

Query: 173 NTIYKNASGLHD---KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NRII 224
           NT   N +GL +    + I+T  + A     L    P+ ++  S     +R     + ++
Sbjct: 216 NTRLYNVNGLPNRGGPDNISTPYELAQFTFKLMARNPEIFEIASTEVDYFRRPGGQDFLL 275

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            N N+ L ++  + G+KTGYT ++GF ++T+    +  ++ V++  P+SQ RD+ A  LI
Sbjct: 276 VNRNRPLVRLDYVTGLKTGYTNSAGFCVITTSNKNNRNLITVILNAPSSQIRDRAAKRLI 335

Query: 285 TSF 287
             F
Sbjct: 336 DHF 338


>gi|269122125|ref|YP_003310302.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sebaldella
           termitidis ATCC 33386]
 gi|268616003|gb|ACZ10371.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sebaldella
           termitidis ATCC 33386]
          Length = 357

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 80/313 (25%), Positives = 140/313 (44%), Gaps = 28/313 (8%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLY 87
           +++  +L LS+ + S          Y  +++   K  +       E R  AS+TK+MT+ 
Sbjct: 4   KILSLMLLLSVFIFSY--------DYKELLVGDTKGNIYVQDNIYEVRPLASMTKVMTIL 55

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           +  + + +K++ L+  + +S TA+   P  + +     FT E+ + A   RS+N+ + A 
Sbjct: 56  LTLDKVNAKEISLDDNVTISYTASKV-PYGVKMNAGETFTVEELLKATAIRSSNNAAYAL 114

Query: 148 GEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT-----ARDQAILGILL 201
            E++S G    F   M+ +A+ +G+ +  Y    GL   N  T      A D   L +  
Sbjct: 115 AEYVSHGDVYDFVDKMNERARSMGLDSLRYCTPHGLPPGNTGTCMDQGNAYDIYKLAMTA 174

Query: 202 RKNFPQYYKYF--SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            + +P+Y K    S    +     +   N LL K+  +DG+KTGY + +G NIV +    
Sbjct: 175 IQ-YPEYMKIADKSSDYIKDGTIQLKATNNLLGKVEGVDGLKTGYHKAAGSNIVLTAERD 233

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLK 319
              ++AVVMG   S+ RD    + I SF    T K  +    +   +T       IK   
Sbjct: 234 GLRMIAVVMGSEKSKNRDTVGADEINSFF--STYKKSKIVDTNKAIAT-------IKISN 284

Query: 320 RTYSQFKKIDAKA 332
           + YS +   D + 
Sbjct: 285 KDYSLYPSEDVEE 297


>gi|257091370|ref|ZP_05585731.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis CH188]
 gi|257417972|ref|ZP_05594966.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis T11]
 gi|257000182|gb|EEU86702.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis CH188]
 gi|257159800|gb|EEU89760.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis T11]
          Length = 475

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 128/298 (42%), Gaps = 37/298 (12%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQDE 73
           L    G+ + Q  +    + +  + I   M + L A     ++IV+D +  ++   +Q +
Sbjct: 4   LVVSCGAFFAQPTVTHAEEDI--TAIAKKMGTTLKADGIPKAAIVVDADSGEILWSQQPD 61

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT----- 127
               PAS+ K+MT+Y+ FE ++  K  ++T +  ++     + SK+Y       T     
Sbjct: 62  LAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DVDISKIYAISNNKITLGVAY 119

Query: 128 -TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL--- 182
              + +  +   S+N  +      ISG++   F  LM+ KA ++GM NT Y N SG    
Sbjct: 120 PVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQAS 179

Query: 183 ------------HDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIIT 225
                        + + ++TARD A L     KN+P+  +                    
Sbjct: 180 AFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEETFE 239

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            +N  L         +DG+KTG +   GFN + +++  D  ++ V++G+   Q +D +
Sbjct: 240 AYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDGE 297


>gi|294779975|ref|ZP_06745355.1| putative beta-lactamase [Enterococcus faecalis PC1.1]
 gi|294452956|gb|EFG21378.1| putative beta-lactamase [Enterococcus faecalis PC1.1]
 gi|315034829|gb|EFT46761.1| putative beta-lactamase [Enterococcus faecalis TX0027]
 gi|315146578|gb|EFT90594.1| putative beta-lactamase [Enterococcus faecalis TX4244]
          Length = 493

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 140/348 (40%), Gaps = 54/348 (15%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQDE 73
           L    G+ + Q  +    + +  + I   M + L A     ++IV+D +  ++   +Q +
Sbjct: 22  LVVSCGAFFAQPTVTHAEEDI--TAIAKKMGTTLKADGIPKAAIVVDADSGEILWSQQPD 79

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT----- 127
               PAS+ K+MT+Y+ FE ++  K  ++T +  ++     + SK+Y       T     
Sbjct: 80  LAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DVDISKIYAISNNKITLGVAY 137

Query: 128 -TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL--- 182
              + +  +   S+N  +      ISG++   F  LM+ KA ++GM NT Y N SG    
Sbjct: 138 PVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQAS 197

Query: 183 ------------HDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIIT 225
                        + + ++TARD A L     KN+P+  +                    
Sbjct: 198 AFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEETFE 257

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ------E 275
            +N  L         +DG+KTG +   GFN + +++  D  ++ V++G+   Q      E
Sbjct: 258 AYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDGEYE 317

Query: 276 RDQKALELITSFLEK-----------KTLKHQQTHRKDNLSSTSLKKS 312
           R      L+                 +T+ H++    ++L     K S
Sbjct: 318 RHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGVIPKGS 365


>gi|256960474|ref|ZP_05564645.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis Merz96]
 gi|256950970|gb|EEU67602.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis Merz96]
          Length = 475

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 128/298 (42%), Gaps = 37/298 (12%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQDE 73
           L    G+ + Q  +    + +  + I   M + L A     ++IV+D +  ++   +Q +
Sbjct: 4   LVVSCGAFFAQPTVTHAEEDI--TAIAKKMGTTLKADGIPKAAIVVDADSGEILWSQQPD 61

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT----- 127
               PAS+ K+MT+Y+ FE ++  K  ++T +  ++     + SK+Y       T     
Sbjct: 62  LAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DVDISKIYAISNNKITLGVAY 119

Query: 128 -TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL--- 182
              + +  +   S+N  +      ISG++   F  LM+ KA ++GM NT Y N SG    
Sbjct: 120 PVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQAS 179

Query: 183 ------------HDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIIT 225
                        + + ++TARD A L     KN+P+  +                    
Sbjct: 180 AFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEETFE 239

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            +N  L         +DG+KTG +   GFN + +++  D  ++ V++G+   Q +D +
Sbjct: 240 AYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDGE 297


>gi|207582659|gb|ACI24891.1| D-alanyl-D-alanine carboxypeptidase-like protein [uncultured
           bacterium]
          Length = 179

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 1/172 (0%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLT 81
           + +R   L+  I+  +   + M          S +++D +   +      D+   PASLT
Sbjct: 6   FAKRLCLLVPLIVTPAAWAVEMMPSPPQLAAKSYVLMDASSGNVLVENNGDQRLPPASLT 65

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT YI    ++  ++  N  + VS+ A     S++++K  T  +    +  +I +S N
Sbjct: 66  KLMTAYIATLEIRRGQIGENDPVTVSENAWRTGGSRMFIKVGTQVSVSDLLHGIIIQSGN 125

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           D S A  E I+GSE  FA +M+  A ++GM N+ + N +GL + +  ++A +
Sbjct: 126 DASVALSEHIAGSEDAFADMMNKTAGELGMSNSHFMNPTGLPNPDHYSSAPE 177


>gi|300861515|ref|ZP_07107599.1| putative beta-lactamase [Enterococcus faecalis TUSoD Ef11]
 gi|312902122|ref|ZP_07761382.1| putative beta-lactamase [Enterococcus faecalis TX0470]
 gi|300848976|gb|EFK76729.1| putative beta-lactamase [Enterococcus faecalis TUSoD Ef11]
 gi|311290786|gb|EFQ69342.1| putative beta-lactamase [Enterococcus faecalis TX0470]
 gi|315026425|gb|EFT38357.1| putative beta-lactamase [Enterococcus faecalis TX2137]
 gi|315144141|gb|EFT88157.1| putative beta-lactamase [Enterococcus faecalis TX2141]
 gi|315167228|gb|EFU11245.1| putative beta-lactamase [Enterococcus faecalis TX1341]
          Length = 493

 Score =  192 bits (488), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 128/298 (42%), Gaps = 37/298 (12%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQDE 73
           L    G+ + Q  +    + +  + I   M + L A     ++IV+D +  ++   +Q +
Sbjct: 22  LVVSCGAFFAQPTVTHAEEDI--TAIAKKMGTTLKADGIPKAAIVVDADSGEILWSQQPD 79

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT----- 127
               PAS+ K+MT+Y+ FE ++  K  ++T +  ++     + SK+Y       T     
Sbjct: 80  LAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DVDISKIYAISNNKITLGVAY 137

Query: 128 -TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL--- 182
              + +  +   S+N  +      ISG++   F  LM+ KA ++GM NT Y N SG    
Sbjct: 138 PVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQAS 197

Query: 183 ------------HDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIIT 225
                        + + ++TARD A L     KN+P+  +                    
Sbjct: 198 AFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEETFE 257

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            +N  L         +DG+KTG +   GFN + +++  D  ++ V++G+   Q +D +
Sbjct: 258 AYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDGE 315


>gi|315154713|gb|EFT98729.1| putative beta-lactamase [Enterococcus faecalis TX0043]
          Length = 493

 Score =  192 bits (488), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 128/298 (42%), Gaps = 37/298 (12%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQDE 73
           L    G+ + Q  +    + +  + I   M + L A     ++IV+D +  ++   +Q +
Sbjct: 22  LVVSCGAFFAQPTVTHAEEDI--TAIAKKMGTTLKADGIPKAAIVVDADSGEILWSQQPD 79

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT----- 127
               PAS+ K+MT+Y+ FE ++  K  ++T +  ++     + SK+Y       T     
Sbjct: 80  LAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DVDISKIYAISNNKITLGVAY 137

Query: 128 -TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL--- 182
              + +  +   S+N  +      ISG++   F  LM+ KA ++GM NT Y N SG    
Sbjct: 138 PVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQAS 197

Query: 183 ------------HDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIIT 225
                        + + ++TARD A L     KN+P+  +                    
Sbjct: 198 AFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEETFE 257

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            +N  L         +DG+KTG +   GFN + +++  D  ++ V++G+   Q +D +
Sbjct: 258 AYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDGE 315


>gi|15827291|ref|NP_301554.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium leprae TN]
 gi|221229769|ref|YP_002503185.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium leprae
           Br4923]
 gi|13092840|emb|CAC30200.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium leprae]
 gi|219932876|emb|CAR70785.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium leprae
           Br4923]
          Length = 411

 Score =  192 bits (488), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 55/263 (20%), Positives = 106/263 (40%), Gaps = 19/263 (7%)

Query: 42  ISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSK 96
           I  A +    P      + +V D+N   +   +    R+ PAS+ K+    +    + + 
Sbjct: 89  IVTAPDTPPVPGDLSAEAWLVADLNSGAVIAARDPHGRHRPASIIKV---LLAMASINT- 144

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
            L+LN  +  +   A    +K+ + +   +T  Q +  L+ +S ND + +    + G ++
Sbjct: 145 -LNLNKSVAGTAEDAAAEGTKVGVHDGGTYTINQLLHGLLMQSGNDAAHSLAMQLGGMQQ 203

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
                ++  A K+G Q+T     SGL      T+A D  +      +N P +    + R 
Sbjct: 204 A-LQKINVLAAKLGGQDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQN-PSFSNIVATRT 261

Query: 217 FRYRN------RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM-G 269
           F +          + N N+LL +     G KTGYT ++G   V +       ++AV++ G
Sbjct: 262 FNFPGPGDHPGYQLENDNQLLYQYPGALGGKTGYTDDAGQTFVGAANRNGRRLMAVLLHG 321

Query: 270 MPTSQERDQKALELITSFLEKKT 292
                   ++A  L+        
Sbjct: 322 TRQPIAPWEQAAHLLDYGFSTAV 344


>gi|256958405|ref|ZP_05562576.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis DS5]
 gi|257078283|ref|ZP_05572644.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis JH1]
 gi|256948901|gb|EEU65533.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis DS5]
 gi|256986313|gb|EEU73615.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis JH1]
          Length = 475

 Score =  192 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 140/348 (40%), Gaps = 54/348 (15%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQDE 73
           L    G+ + Q  +    + +  + I   M + L A     ++IV+D +  ++   +Q +
Sbjct: 4   LVVSCGAFFAQPTVTHAEEDI--TAIAKKMGTTLKADGIPKAAIVVDADSGEILWSQQPD 61

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT----- 127
               PAS+ K+MT+Y+ FE ++  K  ++T +  ++     + SK+Y       T     
Sbjct: 62  LAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DVDISKIYAISNNKITLGVAY 119

Query: 128 -TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL--- 182
              + +  +   S+N  +      ISG++   F  LM+ KA ++GM NT Y N SG    
Sbjct: 120 PVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQAS 179

Query: 183 ------------HDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIIT 225
                        + + ++TARD A L     KN+P+  +                    
Sbjct: 180 AFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEETFE 239

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ------E 275
            +N  L         +DG+KTG +   GFN + +++  D  ++ V++G+   Q      E
Sbjct: 240 AYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDGEYE 299

Query: 276 RDQKALELITSFLEK-----------KTLKHQQTHRKDNLSSTSLKKS 312
           R      L+                 +T+ H++    ++L     K S
Sbjct: 300 RHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGVIPKGS 347


>gi|256618116|ref|ZP_05474962.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis ATCC
           4200]
 gi|257088239|ref|ZP_05582600.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis D6]
 gi|256597643|gb|EEU16819.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis ATCC
           4200]
 gi|256996269|gb|EEU83571.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis D6]
          Length = 475

 Score =  192 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 128/298 (42%), Gaps = 37/298 (12%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQDE 73
           L    G+ + Q  +    + +  + I   M + L A     ++IV+D +  ++   +Q +
Sbjct: 4   LVVSCGAFFAQPTVTHAEEDI--TAIAKKMGTTLKADGIPKAAIVVDADSGEILWSQQPD 61

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT----- 127
               PAS+ K+MT+Y+ FE ++  K  ++T +  ++     + SK+Y       T     
Sbjct: 62  LAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DVDISKIYAISNNKITLGVAY 119

Query: 128 -TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL--- 182
              + +  +   S+N  +      ISG++   F  LM+ KA ++GM NT Y N SG    
Sbjct: 120 PVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQAS 179

Query: 183 ------------HDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIIT 225
                        + + ++TARD A L     KN+P+  +                    
Sbjct: 180 AFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEETFE 239

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            +N  L         +DG+KTG +   GFN + +++  D  ++ V++G+   Q +D +
Sbjct: 240 AYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDGE 297


>gi|323940796|gb|EGB36984.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E482]
          Length = 337

 Score =  192 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 108/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAA 111
           S++++D+N N++      +  R  AS++K+MT  ++ +     +L L+ +  + +S+T  
Sbjct: 29  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDA----RLPLDEKLKVDISQTP- 83

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +      G  K F   M+ KAK +GM
Sbjct: 84  EMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGM 143

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIIT---- 225
            NT +   +GL   N ++TARD   L ++  K +P   +  + R+    + N   T    
Sbjct: 144 NNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFR 201

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L 
Sbjct: 202 NTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLR 261

Query: 285 TS 286
           T 
Sbjct: 262 TW 263


>gi|257420425|ref|ZP_05597415.1| DD-carboxypeptidase [Enterococcus faecalis X98]
 gi|257162249|gb|EEU92209.1| DD-carboxypeptidase [Enterococcus faecalis X98]
          Length = 475

 Score =  192 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 128/298 (42%), Gaps = 37/298 (12%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQDE 73
           L    G+ + Q  +    + +  + I   M + L A     ++IV+D +  ++   +Q +
Sbjct: 4   LVVSCGAFFAQPTVTHAEEDI--TAIAKKMGTTLKADGIPKAAIVVDADSGEILWSQQPD 61

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT----- 127
               PAS+ K+MT+Y+ FE ++  K  ++T +  ++     + SK+Y       T     
Sbjct: 62  LAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DVDISKIYAISNNKITLGVAY 119

Query: 128 -TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL--- 182
              + +  +   S+N  +      ISG++   F  LM+ KA ++GM NT Y N SG    
Sbjct: 120 PVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQAS 179

Query: 183 ------------HDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIIT 225
                        + + ++TARD A L     KN+P+  +                    
Sbjct: 180 AFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEETFE 239

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            +N  L         +DG+KTG +   GFN + +++  D  ++ V++G+   Q +D +
Sbjct: 240 AYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDGE 297


>gi|257080473|ref|ZP_05574834.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis E1Sol]
 gi|256988503|gb|EEU75805.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis E1Sol]
          Length = 475

 Score =  192 bits (487), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 127/298 (42%), Gaps = 37/298 (12%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQDE 73
           L    G+ + Q  +    + +  + I   M + L A     ++IV+D +  ++   +Q +
Sbjct: 4   LVVSCGAFFAQPTVTHAEEDI--TAIAKKMGTTLKADGIPKAAIVVDADSGEILWSQQPD 61

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT----- 127
               PAS+ K+MT+Y+ FE ++  K  ++T +  ++     + SK+Y       T     
Sbjct: 62  LAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DVDISKIYAISNNKITLGVAY 119

Query: 128 -TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL--- 182
              + +  +   S+N  +      ISG +   F  LM+ KA ++GM NT Y N SG    
Sbjct: 120 PVRELLKMIAVPSSNVATLMLANLISGDQPTDFVHLMNQKAAELGMTNTTYYNCSGAQAS 179

Query: 183 ------------HDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIIT 225
                        + + ++TARD A L     KN+P+  +                    
Sbjct: 180 AFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEETFE 239

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            +N  L         +DG+KTG +   GFN + +++  D  ++ V++G+   Q +D +
Sbjct: 240 AYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDGE 297


>gi|315639990|ref|ZP_07895117.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus italicus DSM
           15952]
 gi|315484252|gb|EFU74721.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus italicus DSM
           15952]
          Length = 423

 Score =  192 bits (487), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 144/322 (44%), Gaps = 39/322 (12%)

Query: 34  ILFLSIIMISMASELHAKPKY-------SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMT 85
           +LF  I    +A  + A+ +        ++I ID +  ++   +    P + AS TK+++
Sbjct: 10  LLFCVIGSCVLAPVVQAQEETPLAIQAKAAIAIDSDTGKIFYEQDATTPLHIASTTKLLS 69

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKT--AATQNP--SKLYLKEKTYFTTEQGILALITRSAN 141
           +YII++ +++ KL +  Q+ +S    A +QN   S + L E   ++ +  I A    SAN
Sbjct: 70  MYIIYDQIRTGKLSMTDQVTISAETSALSQNWQLSNVLLYEGQSYSVKNLIEAGFLESAN 129

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD--------------KNQ 187
               A  E ++GSE  F  LM  +    G+ +     ++GL++              +  
Sbjct: 130 AAVMALAEKVAGSEATFVDLMRAQLTTWGITDGTIVTSTGLNNAFLGDNRYPGSGAEEEN 189

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLLNKM----HNID 238
             +A+D AI+   L ++FP+  +  S  +  +      N  + N N++L  M      +D
Sbjct: 190 QLSAKDLAIVARHLLQDFPEVLQITSQSQLTFAEPTGENLELENTNQMLAGMAVATDGVD 249

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE--KKTLK 294
           G+KTG T  +G   V +++  D  ++ VV+ +  +    R  ++  ++       ++   
Sbjct: 250 GLKTGTTDLAGACFVGTVKRGDTRLITVVLDVTDATGIARFTESARMMEWVYSQWQQQTI 309

Query: 295 HQQTHRKDNLSSTSLKKSLMIK 316
           + +T       + S+K    +K
Sbjct: 310 NGETLTIPKRQTISVKDGEQLK 331


>gi|313897406|ref|ZP_07830949.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp.
           HGF2]
 gi|312957776|gb|EFR39401.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp.
           HGF2]
          Length = 327

 Score =  192 bits (487), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 64/220 (29%), Positives = 103/220 (46%), Gaps = 10/220 (4%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S +V+    N +   K  DE +  AS++K+MT  I  E+ Q     L+    V     
Sbjct: 20  AESYVVLSGADNTIVEEKNKDEKQSVASISKIMTAVIAIEHGQ-----LDESFAVDDEIN 74

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S +YLK+    T    +  L+ RS ND +    + ++GS++ F  LM++KA +IGM
Sbjct: 75  KAYGSSVYLKQGQQVTMRDLLYGLMLRSGNDAAVEIAKHVAGSQEAFVELMNHKAAEIGM 134

Query: 172 QNTIYKNASGLH--DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNHN 228
            NT + N SGL   D   I+TA D A+L     KN  ++      + +    N    N N
Sbjct: 135 SNTTFSNPSGLDEEDGGNISTANDMAVLMSYAMKN-KEFRTITGSKYYTTDWNMRWKNKN 193

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +LL       G KTG+T+ +G  +V++  +     + V +
Sbjct: 194 RLLFDYPFTVGGKTGFTKKAGRTLVSAAEHDGVESIVVTL 233


>gi|94991766|ref|YP_599865.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS2096]
 gi|94545274|gb|ABF35321.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS2096]
          Length = 275

 Score =  192 bits (487), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 123/273 (45%), Gaps = 26/273 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           I+R I L+   LF +   +S   E ++     +I +D+   ++   K  +   P AS++K
Sbjct: 2   IKRLISLVVIALFFAASTVS--GEEYSVTAKHAIAVDLESGKVLYEKDAKEVVPVASVSK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ +   KL+ ++ + +S            S + L +K  +T ++ + AL+  
Sbjct: 60  LLTTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPL-DKRKYTVKELLSALVVN 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HD 184
           +AN  + A  E I G+E KF   M  + ++ G+ +    N++GL               D
Sbjct: 119 NANSPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
                 A D AI+   L   FP+  K  S     +  + I ++N +L  M      +DG+
Sbjct: 179 DENCFCATDLAIIARHLLLEFPEVLKLSSKSSTIFAGQTIYSYNYMLKGMPCYREGVDGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
             GY++ +G + V +       ++ VV+    S
Sbjct: 239 FVGYSKKAGASFVATSVENQMRVITVVLNADQS 271


>gi|291518495|emb|CBK73716.1| D-alanyl-D-alanine carboxypeptidase [Butyrivibrio fibrisolvens
           16/4]
          Length = 384

 Score =  192 bits (487), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 63/283 (22%), Positives = 118/283 (41%), Gaps = 27/283 (9%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQS 95
           LS+   + A ++ +    +++V++    +    +   +   PAS TK+MT  +  E +++
Sbjct: 103 LSMQANTTAYKITSLDARAALVMNATTGKALYSQGATDILEPASTTKIMTALLTIEAIEA 162

Query: 96  KKLHLNTQIPVSKTAATQNP---SKL--YLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
            ++ L T + VS TA    P   S +   ++    F  +Q + A++  S         E 
Sbjct: 163 GQISLETPVIVSPTAIAGMPLDASHVSPRIQAGEVFNIDQLLTAMMVSSDCHSCNVLAEV 222

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           ++GS   F  +M+ KA  +G  NT + N SG  DKN  T A    ++     K  P + K
Sbjct: 223 VAGSVPDFVSMMNVKAAALGCTNTNFTNPSGYPDKNMYTNAYSLYLITANAIK-HPLFNK 281

Query: 211 YFSI-------RKFRYRNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRY 258
           YF++              R++ N + ++N         + G KTG    +G  +V   + 
Sbjct: 282 YFNVSNAVLPATNLCATPRVLENTDAIINPTSGYYNPYVIGGKTGTANRAGQCLVCVAKQ 341

Query: 259 KDDPIVAVVMGMPTSQ--------ERDQKALELITSFLEKKTL 293
            +  +++VV+G    +         R  +   LI        L
Sbjct: 342 NEKTVISVVLGAKNRKMFDGNTISMRYYETNRLIDMGFTNYYL 384


>gi|307284847|ref|ZP_07565003.1| putative beta-lactamase [Enterococcus faecalis TX0860]
 gi|306503106|gb|EFM72363.1| putative beta-lactamase [Enterococcus faecalis TX0860]
          Length = 493

 Score =  192 bits (487), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 140/348 (40%), Gaps = 54/348 (15%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQDE 73
           L    G+ + Q  +    + +  + I   M + L A     ++IV+D +  ++   +Q +
Sbjct: 22  LVVSCGAFFAQPTVTHAEEDI--TAIAKKMGTTLKADGIPKAAIVVDADSGEILWSQQPD 79

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT----- 127
               PAS+ K+MT+Y+ FE ++  K  ++T +  ++     + SK+Y       T     
Sbjct: 80  LAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DVDISKIYAISNNKITLGVAY 137

Query: 128 -TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL--- 182
              + +  +   S+N  +      ISG++   F  LM+ KA ++GM NT Y N SG    
Sbjct: 138 PVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQAS 197

Query: 183 ------------HDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIIT 225
                        + + ++TARD A L     KN+P+  +                    
Sbjct: 198 AFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEETFE 257

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ------E 275
            +N  L         +DG+KTG +   GFN + +++  D  ++ V++G+   Q      E
Sbjct: 258 AYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDGEYE 317

Query: 276 RDQKALELITSFLEK-----------KTLKHQQTHRKDNLSSTSLKKS 312
           R      L+                 +T+ H++    ++L     K S
Sbjct: 318 RHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGVIPKGS 365


>gi|229024081|ref|ZP_04180554.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272]
 gi|228737223|gb|EEL87745.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272]
          Length = 338

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 130/284 (45%), Gaps = 16/284 (5%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYI 88
           L+  ++ L   +      + AK   S+I+ID N  ++   K +  P   A+L+K+MT YI
Sbjct: 15  LITVLIVLYFYLYVNGPTIRAK---SAILIDTNSGEIVYKKNERTPIQSATLSKLMTEYI 71

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           + E L   K+ L+  + +         S + +  K   T    + AL+    N  + A  
Sbjct: 72  VMEQLHDGKIQLDESVKIRNEVFQTETSPIQVTSKDNTTVRDLLHALLLTGNNRSALALA 131

Query: 149 EFISGSEKKFAILMSNKAKKIGM-QNTIYKNASGLHDKNQ---ITTARDQAILGILLRKN 204
           E I+G+E  F  LM+ KAK++ + Q + + N++G++ +     ITTA D A +   L K+
Sbjct: 132 EHIAGNEDNFTSLMNEKAKQLKLSQQSPFLNSTGINSEKNRQSITTAIDAAEIAAQLIKD 191

Query: 205 FPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGYTRNSGFNIVTSL 256
           +P            F +++  + N NK++       K+ ++DG+++  + N  ++ V++ 
Sbjct: 192 YPDVLNITKQTSYRFTFKDVQVFNTNKMIYSLNKNIKLKDVDGLQSSLSTNGNYSFVSTA 251

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
              D   ++VV+          +  +L+    E  +    Q  +
Sbjct: 252 NQGDTRFISVVLDANEENTAFVETKKLLQYGFEPTSYSALQAFK 295


>gi|194334807|ref|YP_002016667.1| Serine-type D-Ala-D-Ala carboxypeptidase [Prosthecochloris
           aestuarii DSM 271]
 gi|194312625|gb|ACF47020.1| Serine-type D-Ala-D-Ala carboxypeptidase [Prosthecochloris
           aestuarii DSM 271]
          Length = 317

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 70/279 (25%), Positives = 117/279 (41%), Gaps = 29/279 (10%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKY--------SSIVIDVNKNQMTGFKQDEPRY-PAS 79
            +   ++F    + S+A E HAK           S I+ D+ ++ +   K    R+ PAS
Sbjct: 20  AVFACLMFFCFPVPSIA-EPHAKDSLKVEPLDIASYILKDIGRSTVLLEKDPGTRHEPAS 78

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LTK++T  I  E  +     LN  + +   A    P+K              + A + +S
Sbjct: 79  LTKILTCIIAIESAR-----LNEFVTIPLEATQVEPTKAGFLPGEKIRLLDLVKAAMVKS 133

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK---NQITTARDQAI 196
           +ND + A    + GS + FA +M+ KA ++G+ ++ + N +G          +TA D   
Sbjct: 134 SNDAAFAIAIHLGGSVQGFAAMMNAKAAELGLSHSCFTNPAGFDRHQYVGHYSTAGDMLR 193

Query: 197 LGILLRKNFPQYYKY------FSIRKFRYRNRI-ITNHNKLLNKMHNIDGIKTGYTRNSG 249
           L      N  Q + Y       SI + R      +   NKLL++     GIKTGYT  +G
Sbjct: 194 LTEYAIGN--QIFNYIAGLDEVSITEKRSGKIYRLKTSNKLLHRYPYAVGIKTGYTFRAG 251

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
             ++   +  D  +V V++      +R   A EL     
Sbjct: 252 KCLIARAKKGDRDVVLVMLNARL--DRWSVAEELFEKAF 288


>gi|327536245|gb|AEA95079.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
           OG1RF]
          Length = 493

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 128/298 (42%), Gaps = 37/298 (12%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQDE 73
           L    G+ + Q  +    + +  + I   M + L A     ++IV+D +  ++   +Q +
Sbjct: 22  LVVSCGAFFAQATVTHAEEDI--TAIAKKMGTTLKADGIPKAAIVVDADSGEILWSQQPD 79

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT----- 127
               PAS+ K+MT+Y+ FE ++  K  ++T +  ++     + SK+Y       T     
Sbjct: 80  LAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DVDISKIYAISNNKITLGVAY 137

Query: 128 -TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL--- 182
              + +  +   S+N  +      ISG++   F  LM+ KA ++GM NT Y N SG    
Sbjct: 138 PVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQAS 197

Query: 183 ------------HDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIIT 225
                        + + ++TARD A L     KN+P+  +                    
Sbjct: 198 AFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEETFE 257

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            +N  L         +DG+KTG +   GFN + +++  D  ++ V++G+   Q +D +
Sbjct: 258 AYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDGE 315


>gi|290891993|ref|ZP_06554990.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290558587|gb|EFD92104.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
          Length = 272

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 112/242 (46%), Gaps = 7/242 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++ V  V   +    +  +   P ASL+K+MT +++ E + + +L  +  + + +   
Sbjct: 31  ANAAAVYSVENGKPLYEQNADKVMPIASLSKLMTAFLVLEAVDNNELSWDETLDLVRLDD 90

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S   + +K  ++      A++T SAND +   G+ + G    F   M+ +A K+GM
Sbjct: 91  PSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLGDRLDG--ADFPKEMNRQATKLGM 148

Query: 172 QN-TIYKNASGLHDKNQ--ITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNH 227
            + T + +ASGL    +  ++T +D  +L   L    P+  +  S           + + 
Sbjct: 149 SSRTNFVSASGLDVDGKTAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDEGAKLEST 208

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           N LL  +  +DG+KTG+T  +G+  + +       ++++V+   T ++R +   +L+   
Sbjct: 209 NDLLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTPEKRFKDTEKLMEVG 268

Query: 288 LE 289
            +
Sbjct: 269 FK 270


>gi|297587950|ref|ZP_06946594.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
           ATCC 53516]
 gi|297574639|gb|EFH93359.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
           ATCC 53516]
          Length = 394

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 72/269 (26%), Positives = 129/269 (47%), Gaps = 17/269 (6%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY-----SSIVIDVN-KNQMTGFKQDEPRYP 77
           I++ I LM   L L+I+     S+  +K  +     S   I+ +   ++  + +++P   
Sbjct: 4   IKKIIPLM---LILAIVFQPALSKADSKLGFENKVNSYYTIEQDYSQELLNYNENKPYAI 60

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT  ++ E + + K  L+ +I +    A    S + LK+    T    I  ++ 
Sbjct: 61  ASLTKIMTYVLVMEDINANKYKLDDKIKIQTQYAKPEASTMQLKKGEEVTVNDLIRGMMI 120

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKNQITTARDQA 195
            S ND +        GS  KF   M+ KA ++ +++  + +ASG    DK  + +A+D A
Sbjct: 121 VSGNDAADELAVKSEGSVAKFVERMNKKAAELELESAKFYSASGYPENDKENMMSAKDLA 180

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRII--TNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            L      N+PQ   Y   +K    +R          L K+  +DG KTG T  +G+ ++
Sbjct: 181 KLTTYTINNYPQVLNYTKTQKLSMPSRKYEGVTTVPFLGKIEGVDGFKTGTTEKAGYCLI 240

Query: 254 TSLRYK----DDPIVAVVMGMPTSQERDQ 278
           T++  K    ++ +V+V+MG PT  +R+ 
Sbjct: 241 TTMSLKPNNPNNKVVSVLMGAPTKYDRNT 269


>gi|46909001|ref|YP_015390.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|46882274|gb|AAT05567.1| putative D-alanyl-D-alanine carboxypeptidase [Listeria
           monocytogenes serotype 4b str. F2365]
          Length = 272

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 117/243 (48%), Gaps = 7/243 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++ V  V   +    +  +   P ASLTK+MT +++ E + + +L  + ++ + +   
Sbjct: 31  ANAAAVYSVENGEPLYEENADKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLDLVRLDD 90

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S   + +K  ++      A++T SAND +   G+ + G    F   M+N+AKK+GM
Sbjct: 91  PSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLGDRLDG--ANFPKEMNNQAKKLGM 148

Query: 172 QN-TIYKNASGLHDKNQ--ITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNH 227
            + T + +ASGL    +  ++T +D  +L   L    P+  +  S       +   + + 
Sbjct: 149 SSKTTFVSASGLDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKSSVTTDKGAKLEST 208

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           N  L  +  +DG+KTG+T  +G+  + +       ++++V+   T+++R +   +L+   
Sbjct: 209 NDSLGSIQGLDGLKTGFTDEAGYCFIGTAERGGRRVISIVLDAGTAEKRFKDTEKLMEVG 268

Query: 288 LEK 290
            ++
Sbjct: 269 FKE 271


>gi|16804849|ref|NP_466334.1| hypothetical protein lmo2812 [Listeria monocytogenes EGD-e]
 gi|224502774|ref|ZP_03671081.1| hypothetical protein LmonFR_09674 [Listeria monocytogenes FSL
           R2-561]
 gi|16412312|emb|CAD01025.1| lmo2812 [Listeria monocytogenes EGD-e]
          Length = 272

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 118/243 (48%), Gaps = 7/243 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++ V  V   +    +  +   P ASL+K+MT +++ E + + +L  + ++ + +   
Sbjct: 31  ANAAAVYSVENGEALYEQNADKVMPIASLSKLMTAFLVLEAVDNNELSWDEKLDLVRLDD 90

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S   + +K  ++      A++T SAND +   G+ + G    F   M+N+AKK+GM
Sbjct: 91  PSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLGDRLDG--ADFPKEMNNQAKKLGM 148

Query: 172 QN-TIYKNASGLHDKNQ--ITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNH 227
            + T + +ASGL    +  ++T +D  +L   L    P+  +  S       +   + + 
Sbjct: 149 SSKTTFVSASGLDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDKGAKLEST 208

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           N LL  +  +DG+KTG+T  +G+  + +       ++++V+   T+++R +   +L+   
Sbjct: 209 NDLLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVG 268

Query: 288 LEK 290
            ++
Sbjct: 269 FKE 271


>gi|307276651|ref|ZP_07557769.1| putative beta-lactamase [Enterococcus faecalis TX2134]
 gi|306506761|gb|EFM75913.1| putative beta-lactamase [Enterococcus faecalis TX2134]
          Length = 493

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 128/298 (42%), Gaps = 37/298 (12%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQDE 73
           L    G+ + Q  +    + +  + I   M + L A     ++IV+D +  ++   +Q +
Sbjct: 22  LVVSCGTFFAQPTVTHAEEDI--TAIAKKMGTTLKADGIPKAAIVVDADSGEILWSQQPD 79

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT----- 127
               PAS+ K+MT+Y+ FE ++  K  ++T +  ++     + SK+Y       T     
Sbjct: 80  LAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DVDISKIYAISNNKITLGVAY 137

Query: 128 -TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL--- 182
              + +  +   S+N  +      ISG++   F  LM+ KA ++GM NT Y N SG    
Sbjct: 138 PVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQAS 197

Query: 183 ------------HDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIIT 225
                        + + ++TARD A L     KN+P+  +                    
Sbjct: 198 AFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEETFE 257

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            +N  L         +DG+KTG +   GFN + +++  D  ++ V++G+   Q +D +
Sbjct: 258 AYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDGE 315


>gi|315171194|gb|EFU15211.1| putative beta-lactamase [Enterococcus faecalis TX1342]
          Length = 493

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 140/348 (40%), Gaps = 54/348 (15%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQDE 73
           L    G+ + Q  +    + +  + I   M + L A     ++IV+D +  ++   +Q +
Sbjct: 22  LVVSCGAFFAQATVTHAEEDI--TAIAKKMGTTLKADGIPKAAIVVDADSGEILWSQQPD 79

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT----- 127
               PAS+ K+MT+Y+ FE ++  K  ++T +  ++     + SK+Y       T     
Sbjct: 80  LAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DVDISKIYAISNNKITLGVAY 137

Query: 128 -TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL--- 182
              + +  +   S+N  +      ISG++   F  LM+ KA ++GM NT Y N SG    
Sbjct: 138 PVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQAS 197

Query: 183 ------------HDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIIT 225
                        + + ++TARD A L     KN+P+  +                    
Sbjct: 198 AFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEETFE 257

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ------E 275
            +N  L         +DG+KTG +   GFN + +++  D  ++ V++G+   Q      E
Sbjct: 258 AYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDGEYE 317

Query: 276 RDQKALELITSFLEK-----------KTLKHQQTHRKDNLSSTSLKKS 312
           R      L+                 +T+ H++    ++L     K S
Sbjct: 318 RHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGVIPKGS 365


>gi|257462931|ref|ZP_05627336.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. D12]
 gi|317060551|ref|ZP_07925036.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. D12]
 gi|313686227|gb|EFS23062.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. D12]
          Length = 379

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 117/241 (48%), Gaps = 13/241 (5%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           + +V D  K  +   K  D+    AS+TK+MTL + F+ +++ + HL  ++ ++K    +
Sbjct: 135 AGLVAD-TKGNIYYSKNIDKKLPMASVTKVMTLLVTFDAIRNGEAHLEDKVVITKDVYNK 193

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGM- 171
             S + +K    FT    I A    SAN+ + A  + I  GS   F   M+ KA+++G+ 
Sbjct: 194 GGSGISMKPGETFTLLDLIRATAIYSANNAAYAVAKHIGKGSISNFIKKMNKKAREMGIS 253

Query: 172 QNTIYKNASGLH-----DKNQITTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRII 224
           +   Y + +GL      +   I TAR    L +   K +P+Y K   I+  K  +    I
Sbjct: 254 KEISYYSPAGLPSRYTKEPMDIGTARGIYKLSLEAIK-YPEYMKIAGIKQMKIHHGKINI 312

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            N N L+ +   I GIKTGY + + +NI  + +      + V++G  + ++RD   L L+
Sbjct: 313 RNRNHLIGE-EGIYGIKTGYHKEAKYNITVASKDGSREFIVVILGGESYKDRDNAVLRLL 371

Query: 285 T 285
            
Sbjct: 372 E 372


>gi|76789288|ref|YP_328374.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
           A/HAR-13]
 gi|237802980|ref|YP_002888174.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804902|ref|YP_002889056.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|76167818|gb|AAX50826.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
           A/HAR-13]
 gi|231273202|emb|CAX10115.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231274214|emb|CAX11008.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
           B/Jali20/OT]
          Length = 437

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 64/305 (20%), Positives = 122/305 (40%), Gaps = 38/305 (12%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPK------YSSIVIDVNKNQMTGFKQ-DEPRYPA 78
           R   L+ +  F+ +    ++  L+A P         + V+  +   +   K  D   +PA
Sbjct: 2   RTFFLLCR-FFICLAPFFLSFPLYADPHTVLTKGIVAAVVHADSGAILKEKNLDHKIFPA 60

Query: 79  SLTKMMTLYIIFEY--------LQSKKLHLNTQIPVSK---------TAATQNPSKLYLK 121
           S+TK+ T  +I           + +++  L +  P +K              +   + LK
Sbjct: 61  SMTKIATALLILRQYPDVLTRFITTRREPLTSITPQAKQQSGYRSPPHWLETDGMTIQLK 120

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
            K   +      AL+  SAND +    +    S   F   ++   +++G QNT + +  G
Sbjct: 121 VKEEVSGWDLFHALLISSANDAANVLADACCQSVSAFMRQLNEFLRELGCQNTHFNSPHG 180

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLLNK-- 233
           LH  +  TTARD +++     K  P + +      +          R++++ NKLL+   
Sbjct: 181 LHHPDHYTTARDLSLIMKEALKE-PLFRQVIRTASYTMEATNLSPERVLSSTNKLLSSSS 239

Query: 234 ---MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-DQKALELITSFLE 289
                   G KTG T+++G NI+ +    +  I+ V  G      +  Q A+ L      
Sbjct: 240 TYFYPPCLGGKTGTTKSAGKNIIFAAEKNNRSIIVVAAGYFGPAAQLYQDAIALCEDLFN 299

Query: 290 KKTLK 294
           ++ L+
Sbjct: 300 EQLLR 304


>gi|108805102|ref|YP_645039.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rubrobacter xylanophilus
           DSM 9941]
 gi|108766345|gb|ABG05227.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rubrobacter xylanophilus
           DSM 9941]
          Length = 384

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 18/257 (7%)

Query: 63  KNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP---SKL 118
             ++       E    AS TK+M   +           L+ ++ VS  AA       S +
Sbjct: 47  SGELLASHDAGERLPMASTTKIMLAIVALREG-----GLDREVAVSPRAAAYAAPPYSNV 101

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYK 177
            L+     +  + ++A +  S +D + A  E + G S ++    M+ +A+++G+++T ++
Sbjct: 102 GLRAGDVLSLRELLMASLISSGDDAAYALAEALGGGSVERLVEKMNREARRLGLEDTHFQ 161

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNRIITNHNKLLNK 233
           N  GL  +   ++ARD   +     + +P + +  + R        R   +TN N+LL  
Sbjct: 162 NPVGLDGRRHRSSARDLVRMSREAMQ-YPLFREIVATRYAVISTPDREIPLTNTNELLFT 220

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
                GIKTG T  +G  +V S    D+  VAVV+      +R   +L L+         
Sbjct: 221 YPPATGIKTGTTPAAGPCLVASAASGDESYVAVVLDAR--ADRFAASLRLLEYGFSAYD- 277

Query: 294 KHQQTHRKDNLSSTSLK 310
           + +   R +  +S  + 
Sbjct: 278 RRELVRRGERYASVEVP 294


>gi|284800301|ref|YP_003412166.1| hypothetical protein LM5578_0046 [Listeria monocytogenes 08-5578]
 gi|284993486|ref|YP_003415254.1| hypothetical protein LM5923_0046 [Listeria monocytogenes 08-5923]
 gi|284055863|gb|ADB66804.1| hypothetical protein LM5578_0046 [Listeria monocytogenes 08-5578]
 gi|284058953|gb|ADB69892.1| hypothetical protein LM5923_0046 [Listeria monocytogenes 08-5923]
          Length = 272

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 118/242 (48%), Gaps = 7/242 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++ V  V   +    K+ D+    ASLTK+MT +++ E + + +L  + ++ + +   
Sbjct: 31  ANAAAVYSVENGEALYEKKTDKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLNLVRLDD 90

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S   + +K  ++      A++T SAND +   G+ + G    F   M+N+AKK+GM
Sbjct: 91  PSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLGDRLDG--ANFPKEMNNQAKKLGM 148

Query: 172 QN-TIYKNASGLHDKNQ--ITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNH 227
            + T + +ASGL    +  ++T +D  +L   L    P+  +  S       +   + + 
Sbjct: 149 SSKTTFVSASGLDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDKGAKLEST 208

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           N LL  +  +DG+KTG+T  +G+  + +       ++++V+   T+++R +   +L+   
Sbjct: 209 NDLLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVG 268

Query: 288 LE 289
            +
Sbjct: 269 FK 270


>gi|239623982|ref|ZP_04667013.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522013|gb|EEQ61879.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 337

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 55/268 (20%), Positives = 109/268 (40%), Gaps = 25/268 (9%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQS 95
           L ++    + +       ++ + D++  ++   K   E  YPAS+TK+MT  +       
Sbjct: 72  LCVVTDEASFDPGFATSEAAALFDLDDREVLYSKDAFERMYPASITKIMTALVAIREGD- 130

Query: 96  KKLHLNTQIPVSKTAATQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               L +++ V+  A    P  +   ++     T EQ +  L+  S ND   A    I+G
Sbjct: 131 ----LKSRVLVTDDAVITEPGATLCGIEPGDTLTLEQLLYGLMLPSGNDAGAAIAVHIAG 186

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S   FA +M+ +A ++G   T + N  GL+D +  TTA D  ++     K +P + +   
Sbjct: 187 SVDAFADMMNEEALRLGATGTHFMNPHGLNDPDHYTTAYDLYLIFNEALK-YPVFRQIVG 245

Query: 214 IRKFRYR---------NRIITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRY 258
              +            ++     N  +           + G KTG T+ +G+ ++ + R 
Sbjct: 246 TTAYTANYHNKNSEPVSKTWKGSNWFMTGERETPDGLKVFGGKTGTTKAAGYCLIMASRD 305

Query: 259 K-DDPIVAVVMGMPTSQERDQKALELIT 285
             D   ++VV+   +          +I+
Sbjct: 306 DSDKEYISVVLKADSRPHLYDNMTNIIS 333


>gi|254827380|ref|ZP_05232067.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258599758|gb|EEW13083.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
          Length = 272

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 119/243 (48%), Gaps = 7/243 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++ V  V   +    K+ D+    ASLTK+MT +++ E + + +L  + ++ + +   
Sbjct: 31  ANAAAVYSVENGEALYEKKTDKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLNLVRLDD 90

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S   + +K  ++      A++T SAND +   G+ + G    F   M+N+AKK+GM
Sbjct: 91  PSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLGDRLDG--ADFPKEMNNQAKKLGM 148

Query: 172 QN-TIYKNASGLHDKNQ--ITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNH 227
            + T + +ASGL    +  ++T +D  +L   L    P+  +  S       +   + + 
Sbjct: 149 SSKTTFVSASGLDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDKGAKLEST 208

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           N LL  +  +DG+KTG+T  +G+  + +       ++++V+   T+++R +   +L+   
Sbjct: 209 NDLLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVG 268

Query: 288 LEK 290
            ++
Sbjct: 269 FKE 271


>gi|219684372|ref|ZP_03539316.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia garinii PBr]
 gi|219672361|gb|EED29414.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia garinii PBr]
          Length = 392

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 122/297 (41%), Gaps = 26/297 (8%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           K   S +++D +  ++   K       PASLTK++T+Y      + + + L + +P+S  
Sbjct: 29  KHAKSIVLMDFDTKRILYSKNPNLVFPPASLTKIVTIYTALIEAEKRNIKLKSIVPISDA 88

Query: 110 A----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           A    A  N S ++L++      E+ +  L   S ND S A  EF+ G    F  LM+  
Sbjct: 89  ASYYNAPLNSSLMFLEKGQIVNFEEILKGLSVSSGNDASIAIAEFVVGDLNSFVNLMNIN 148

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----- 220
              +G+ N  +   SG  ++N   TA D A       + F       S++ F Y      
Sbjct: 149 VLNLGLLNMHFVEPSGYSNEN-KITALDMAFFVKSYIEKFKFMLNIHSLKYFVYPKSKNL 207

Query: 221 ---------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
                    N    N N L++     DG+KTGY + SG N+V + +     ++AVV+G+ 
Sbjct: 208 GTTLSSKFLNLKQKNANLLISDYPYSDGLKTGYIKESGLNLVATAQKYGRRLIAVVLGVE 267

Query: 272 ------TSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTY 322
                   + R   A +L      + +        K+ + + ++    +  K    Y
Sbjct: 268 KGINRFGEKMRALIAKDLFEYGFNEYSKFPLIVKLKEKVYNGTVDTVALFSKEPFYY 324


>gi|291536181|emb|CBL09293.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis M50/1]
 gi|291538955|emb|CBL12066.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis XB6B4]
          Length = 327

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 24/246 (9%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLY 119
            N++   K   E  YPAS TK++T YI  +Y       L+  + +S+ AA Q  + S   
Sbjct: 87  TNEIVYAKNIYERLYPASTTKILTAYIALKYCTD----LSQTVTISENAANQASDSSVCG 142

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           L        +  +  ++ RS ND + +  E ISGS ++FA LM+ +A  +G   + + N 
Sbjct: 143 LHAGDVIRMDDLLYGMMLRSGNDAAISIAESISGSVEEFAALMNKEAAALGATQSHFVNP 202

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF---------RYRNRIITNHNKL 230
           +GL D+N  T+  D  ++     +N   + +  S   +                 N N+ 
Sbjct: 203 NGLPDENHYTSVYDLYLIFRAALQN-ETFVQIISTTSYDVTYQAGDGTIEEHTWENTNQY 261

Query: 231 LN---KMHN---IDGIKTGYTRNSGFNIVT-SLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           L+   K  +   + G KTG T  +G+ +V  S+  +  PI+++V+             E+
Sbjct: 262 LSGHAKSPDGFTVIGGKTGTTGAAGYCLVLYSMNEQSQPIISIVLKADGKSNLYLLMNEM 321

Query: 284 ITSFLE 289
           ++ F  
Sbjct: 322 LSGFAN 327


>gi|145294853|ref|YP_001137674.1| hypothetical protein cgR_0800 [Corynebacterium glutamicum R]
 gi|140844773|dbj|BAF53772.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 436

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 99/239 (41%), Gaps = 14/239 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + +V D++  ++   K    RY PAS+ K++   +  +     +L+  T +  +  AA
Sbjct: 127 ASAWMVFDIDSGEIIAAKDPHGRYRPASIIKVLLSLVAID-----ELNPTTVVTGTMEAA 181

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S++ + E   +T +Q +  L+  S ND +    + + G +      ++  AK++G 
Sbjct: 182 NIEGSRVGVGEGGQYTVDQLLHGLLLASGNDAAYLLAQELGGDQAT-LEKVNALAKELGT 240

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN------RIIT 225
           Q+T     SGL      T+A D +++     +N P +    S     +          + 
Sbjct: 241 QDTFVATYSGLDAPGMSTSAYDMSLIYQHAWQN-PVFESIISTDHIDFPGWGDNEGFQVW 299

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L     +  G KTGYT ++    V  L      + AV++    S  R  +   L+
Sbjct: 300 NDNALFMNDPDGIGGKTGYTDDANHTFVGGLDRGGRRLAAVLLDSTVSDIRPWEQARLL 358


>gi|139438318|ref|ZP_01771871.1| Hypothetical protein COLAER_00860 [Collinsella aerofaciens ATCC
           25986]
 gi|133776515|gb|EBA40335.1| Hypothetical protein COLAER_00860 [Collinsella aerofaciens ATCC
           25986]
          Length = 469

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 72/307 (23%), Positives = 126/307 (41%), Gaps = 33/307 (10%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A  L      +++V+      +   +  DE    AS+TK+MT  +  E  +     ++ +
Sbjct: 77  AENLPDIDATNALVM-GKDGTVYYGRGADEQVKIASITKVMTAILTVENCK-----MDEK 130

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS--------GSE 155
           + VS  AAT   S   L E    T EQ +  L+  S ND +    E++          +E
Sbjct: 131 VTVSNAAATVGNSTAGLLEGDELTVEQALRGLMIPSGNDAAIVLAEYVGKKIDPKTKDAE 190

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLH----DKNQITTARDQAILGILLRKNFPQYYKY 211
             F   M+ +AKK+G   T+++N  GL       +  +TA D A++     KN       
Sbjct: 191 ATFVKAMNERAKKLGCTGTLFENPHGLDFDEWAGDMHSTAHDVALMMQEAMKNDTIREVV 250

Query: 212 FSIRKF--------RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
            S   +           +  +  HN LL +  NI G KTG T ++G+   ++     D I
Sbjct: 251 ASEDSWIEVTGADGTDHSHSMDTHNYLLGQDGNI-GGKTGTTDDAGYCFTSAYNRDGDEI 309

Query: 264 VAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYS 323
             V++   T+ +R      L+  + +     H+ T    N    +   + ++ ++ +T  
Sbjct: 310 YTVILNSTTTDQRFTDTATLVNWYYD-----HKVTVAIANTQEKTANGNPLMARISQTDW 364

Query: 324 QFKKIDA 330
             K IDA
Sbjct: 365 TDKTIDA 371


>gi|108798187|ref|YP_638384.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. MCS]
 gi|119867283|ref|YP_937235.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. KMS]
 gi|108768606|gb|ABG07328.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. MCS]
 gi|119693372|gb|ABL90445.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. KMS]
          Length = 410

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 99/244 (40%), Gaps = 15/244 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + +V D++  ++   +    R+ PAS+ K+    I  + L+  +L+L   +P +    
Sbjct: 101 AEAWLVADMDTGEVIAARDPHGRHRPASVIKV---LIAIQSLK--ELNLAKAVPGTPEDG 155

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               + + +     +T    +  L+  S ND + A    + G +     L +  A K+G 
Sbjct: 156 AAEGTSVGVDVGGLYTVNDLLHGLLMYSGNDAAHALARQLGGMDTALLKL-NQLAGKLGG 214

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR------IIT 225
           ++T     SGL      T+A D A+      +N P + +  + R + +  R       I 
Sbjct: 215 RDTRVATPSGLDGPGMSTSAYDIALFYRYAWRN-PTFTEIVATRTYDFPGRDGNPPYPIE 273

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM-GMPTSQERDQKALELI 284
           N  KLL       G KTG+T ++G   V         +VAV++ G        ++A  L+
Sbjct: 274 NDVKLLYNYPGALGGKTGFTDDAGQTFVGGAERDGRRLVAVLLRGTRQPIAPWEQAARLL 333

Query: 285 TSFL 288
               
Sbjct: 334 DYGF 337


>gi|222095010|ref|YP_002529070.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1]
 gi|221239068|gb|ACM11778.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1]
          Length = 428

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 75/335 (22%), Positives = 135/335 (40%), Gaps = 36/335 (10%)

Query: 23  YIQRNIQLMGKILFLSIIMISMAS--------ELHAKPKYS-------SIVIDVNKNQMT 67
           + +  + +    LF    M   A         ++   PK         +  ID     + 
Sbjct: 4   FKKILVFITAICLFFLTPMTLRAETNVGVNPEQVAPPPKEGPNVFSQFATTIDAKTGDIL 63

Query: 68  GFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK--LYLKEKT 124
             K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S   + L+   
Sbjct: 64  YDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSNYQIELQPGE 118

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
                  ++ L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GLHD
Sbjct: 119 TINRNTALMILMVLSANDVSYAIAEHIGGSVENFANMMNERAKQLGATDSHFVTPNGLHD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLNKMHNIDGI 240
            N  TT  D A++   ++K +P+  +  + ++        T    N +          G 
Sbjct: 179 PNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYFEN-PFSIGG 236

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLEKKTL----- 293
           KTG+T  +   +V       + I+ VVM     +  E  ++  +       K+T+     
Sbjct: 237 KTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMADYSFGQFVKQTVLDKHS 296

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
            HQ+T   +    + L+KS  +   K      + I
Sbjct: 297 WHQKTTYLNKDIDSELEKSAEVMLKKDEGKNVRTI 331


>gi|262067346|ref|ZP_06026958.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378909|gb|EFE86427.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium
           periodonticum ATCC 33693]
          Length = 424

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 75/257 (29%), Positives = 128/257 (49%), Gaps = 14/257 (5%)

Query: 56  SIVI-DVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++I D+N   +   K  +  YP AS+TK+M+L + F+ + +  + L+  + +SKT    
Sbjct: 171 AVLIGDLN-GNVIFSKNPDTMYPLASVTKVMSLLVTFDEINAGNIGLHDSVRISKTPLKY 229

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQ 172
             S + LKE   F  E  I A    SAN+ + A  E++  GS   F   M+ K K++G+Q
Sbjct: 230 GGSGIPLKEGQIFILEDLIKASAVYSANNATYAMAEYVGEGSIFNFVAKMNRKLKQLGLQ 289

Query: 173 N-TIYKNASGLHDKNQIT-----TARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RII 224
           N   Y   +GL  +N        T R    L I   K + +Y +   I+  +  N    I
Sbjct: 290 NDIKYYTPAGLPTRNTKMPMDEGTPRGIYKLSIEALK-YHKYIEIAGIKNTKIHNDKISI 348

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            N N L+ +   + GIKTG+ + + +NI  +++++   ++ VVMG  T + RD     +I
Sbjct: 349 RNRNHLIGE-DGVYGIKTGFHKEAKYNITVAVKFEGIDLIIVVMGGETYKTRDDLVRTII 407

Query: 285 TSFLEKKTLKHQQTHRK 301
            +  E  T+++ Q  RK
Sbjct: 408 ANLKENYTVRNGQIIRK 424


>gi|148379380|ref|YP_001253921.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A str. ATCC 3502]
 gi|153934047|ref|YP_001383756.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936557|ref|YP_001387306.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A str. Hall]
 gi|148288864|emb|CAL82948.1| putative D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum
           A str. ATCC 3502]
 gi|152930091|gb|ABS35591.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932471|gb|ABS37970.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum A str. Hall]
          Length = 424

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 89/318 (27%), Positives = 133/318 (41%), Gaps = 37/318 (11%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
           I L+  IL L+  + +        P     +++ IDV   ++   K  D+  YPAS TK 
Sbjct: 9   ISLLIFILTLTSNVFAAGDSNTEPPTIYGKTAMTIDVETGEIIYAKNIDKRMYPASTTKY 68

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-----YLKEKTYFTTEQGILALITR 138
           +T  ++ E     K   N  IP + TA +Q    L      +        E  +  L+  
Sbjct: 69  LTALLLAEN--KGK---NDNIPYTATAKSQPQYSLNINLHPINIGETIKAENVMDGLLLF 123

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S NDV+   G+ ++G+ K F  +MS K +++ ++NT +   +GLH+ N  TTA D +++ 
Sbjct: 124 SGNDVAYMIGDALAGNNKNFENMMSKKIQELNLKNTHFVTPNGLHNPNHYTTAYDLSVIS 183

Query: 199 ILLRKNFPQYY-----KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
               KN P  Y     K  SI   +     I N NKLL K       KTGYT  +G  +V
Sbjct: 184 RAALKN-PWVYQSSNKKESSIVTSKGTKMAIENSNKLLGK-DGCVAGKTGYTDAAGRCLV 241

Query: 254 TSLRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKKTLKHQQTHRKDNLSSTSLK 310
           T        I+ VVMG     +     Q   ++I      K              ST  K
Sbjct: 242 TLFNRDGRKILGVVMGSVYDAKDSFVFQDMKKIIDWSYNVK-------------PSTLYK 288

Query: 311 KSLMIKKLKRTYSQFKKI 328
           K   +K    TY+  K I
Sbjct: 289 KDSSLKTETVTYNPLKII 306


>gi|187918466|ref|YP_001884029.1| D-alanyl-D-alanine carboxypeptidase [Borrelia hermsii DAH]
 gi|119861314|gb|AAX17109.1| D-alanyl-D-alanine carboxypeptidase [Borrelia hermsii DAH]
          Length = 316

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 129/300 (43%), Gaps = 32/300 (10%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHA-----KPKYSSIVIDVNKNQMTGFKQDEPR-YP 77
           ++    ++  ++  SI     + +L       +   S ++ID +  ++   K       P
Sbjct: 1   MKIVFTILSFLILFSIFGKLFSIDLFDIERVTEDAKSVVLIDYDTKRIFYAKNPNLVFPP 60

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN----PSKLYLKEKTYFTTEQGIL 133
           ASLTK++T+Y      + K + L T +P+S  A+  N     S ++L+E      E+ + 
Sbjct: 61  ASLTKLVTIYTALVEARKKNIDLKTIVPISSAASYYNLPLGSSLMFLEEGHKVNFEELLK 120

Query: 134 ALITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
            L+  S ND + A  EFI G +   F  LM+     +G+ N  + + SG  + NQI TA 
Sbjct: 121 GLVISSGNDAAIAIAEFIVGKNLSNFVNLMNINVLNLGLVNMNFVDTSGYCNGNQI-TAL 179

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYR--------------NRIITNHNKLLNKMHNID 238
           + A+      + F       S++ F Y               N    N N L+      D
Sbjct: 180 EMALFARTYIEEFEFMLAIHSLKDFIYPRSENLGNTSSSKMLNLKQENRNVLIFNYPYAD 239

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP------TSQERDQKALELITSFLEKKT 292
           G+KTGY + SG N+V + +  D  ++AVV+G+         ++R   A +L        +
Sbjct: 240 GLKTGYIKTSGLNLVATAKKDDIRLIAVVLGVNKGINSVGEKKRALIAQKLFEYGFSNYS 299


>gi|126433845|ref|YP_001069536.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. JLS]
 gi|126233645|gb|ABN97045.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. JLS]
          Length = 410

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 99/244 (40%), Gaps = 15/244 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + +V D++  ++   +    R+ PAS+ K+    I  + L+  +L+L   +P +    
Sbjct: 101 AEAWLVADMDTGEVIAARDPHGRHRPASVIKV---LIAIQSLK--ELNLAKAVPGTPEDG 155

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               + + +     +T    +  L+  S ND + A    + G +     L +  A K+G 
Sbjct: 156 AAEGTSVGVDVGGLYTVNDLLHGLLMYSGNDAAHALARQLGGMDTALLKL-NQLAGKLGG 214

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR------IIT 225
           ++T     SGL      T+A D A+      +N P + +  + R + +  R       I 
Sbjct: 215 RDTRVATPSGLDGPGMSTSAYDVALFYRYAWRN-PTFTEIVATRTYDFPGRDGNPPYPIE 273

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM-GMPTSQERDQKALELI 284
           N  KLL       G KTG+T ++G   V         +VAV++ G        ++A  L+
Sbjct: 274 NDVKLLYNYPGALGGKTGFTDDAGQTFVGGAERDGRRLVAVLLRGTRQPIAPWEQAARLL 333

Query: 285 TSFL 288
               
Sbjct: 334 DYGF 337


>gi|307270557|ref|ZP_07551855.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
           TX4248]
 gi|306513138|gb|EFM81772.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
           TX4248]
          Length = 493

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 141/348 (40%), Gaps = 54/348 (15%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQDE 73
           L    G+ + Q  +    + +  + I   M + L A     ++IV+D +  ++   +Q +
Sbjct: 22  LVVSCGAFFAQPTVTHAEEDI--TAIAKKMGTTLKADGIPKAAIVVDADSGEILWSQQPD 79

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT----- 127
               PAS+ K+MT+Y+ FE ++  K  ++T +  ++     + SK+Y       T     
Sbjct: 80  LAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DVDISKIYAISNNKITLGVAY 137

Query: 128 -TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL--- 182
              + +  +   S+N  +      ISG++   F  LM+ KA ++GM NT Y N SG    
Sbjct: 138 PVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQAS 197

Query: 183 ------------HDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIIT 225
                        + + ++TARD A L     KN+P+  +                    
Sbjct: 198 AFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEETFE 257

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ------E 275
            +N  L         +DG+KTG +   GFN + +++ +D  ++ V++G+   Q      E
Sbjct: 258 AYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQEDFRLIEVILGVGNWQNQDGEYE 317

Query: 276 RDQKALELITSFLEK-----------KTLKHQQTHRKDNLSSTSLKKS 312
           R      L+                 +T+ H++    ++L     K S
Sbjct: 318 RHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGVIPKGS 365


>gi|217965981|ref|YP_002351659.1| beta-lactamase [Listeria monocytogenes HCC23]
 gi|217335251|gb|ACK41045.1| beta-lactamase [Listeria monocytogenes HCC23]
 gi|307572402|emb|CAR85581.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria
           monocytogenes L99]
          Length = 272

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 113/242 (46%), Gaps = 7/242 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++ V  V   +    +  +   P ASL+K+MT ++I E + + +L  +  + + +   
Sbjct: 31  ANAAAVYSVENGKPLYEQNADKVMPIASLSKLMTAFLILEAVDNNELSWDETLDLVRLDD 90

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S   + +K  ++      A++T SAND +   G+ + G    F   M+ +A K+GM
Sbjct: 91  PSAVSLYAITQKRTWSVRDLYNAMLTMSANDAAETLGDRLDG--ADFPKEMNRQATKLGM 148

Query: 172 QN-TIYKNASGLHDKNQ--ITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNH 227
            + T + +ASGL    +  ++T +D  +L   L    P+  +  S           + + 
Sbjct: 149 SSRTNFVSASGLDVDGKTAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDEGAKLEST 208

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           N LL  +  +DG+KTG+T  +G+  + +       ++++V+   T+++R +   +L+   
Sbjct: 209 NDLLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVG 268

Query: 288 LE 289
            +
Sbjct: 269 FK 270


>gi|118617116|ref|YP_905448.1| penicillin-binding protein DacC [Mycobacterium ulcerans Agy99]
 gi|118569226|gb|ABL03977.1| penicillin-binding protein DacC [Mycobacterium ulcerans Agy99]
          Length = 415

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/267 (20%), Positives = 102/267 (38%), Gaps = 19/267 (7%)

Query: 37  LSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFE 91
           L    I  A +    P      + +V D++   +   +    R+ PAS+ K++ + +  +
Sbjct: 84  LGGCGIIAAPDTPPVPGDVSAEAWLVGDLDSGAIIAARDPHGRHRPASIIKVLVVMVSIK 143

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            L   K      +P +   +    +K+ +     +T  Q +  L+  S ND + A    +
Sbjct: 144 ELNQNKA-----VPGTNDDSAAEGTKVGVNAGGMYTVNQLLHGLLMHSGNDAAHALAIQL 198

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            G +      ++  A K+G ++T     SGL      T+A D  +      +N P +   
Sbjct: 199 GGMQTA-LEKINMLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQN-PIFADI 256

Query: 212 FSIRKFRYRNRI------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            + R F +          + N N LL       G KTGYT ++G   V +  +    + A
Sbjct: 257 VATRTFDFPGHGEHPGYELENDNHLLYNYPGALGGKTGYTDDAGQTFVGAANHNGRRLFA 316

Query: 266 VVM-GMPTSQERDQKALELITSFLEKK 291
           V++ G        ++A  L+       
Sbjct: 317 VLLHGTRQPIAPWEQAAHLLDYGFSTA 343


>gi|257417256|ref|ZP_05594250.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis AR01/DG]
 gi|257159084|gb|EEU89044.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis ARO1/DG]
          Length = 475

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 128/298 (42%), Gaps = 37/298 (12%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP-KYSSIVIDVNKNQMTGFKQDE 73
           L    G+ + Q  +    + +  + I   M + L A     ++IV+D +  ++   +Q +
Sbjct: 4   LVVSCGAFFAQPTVTHAEEDI--TAIAKKMGTTLKADGIPKAAIVVDADSGEILWSQQPD 61

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT----- 127
               PAS+ K+MT+Y+ FE ++  K  ++T +  ++     + SK+Y       T     
Sbjct: 62  LAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DVDISKIYAISNNKITLGVAY 119

Query: 128 -TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL--- 182
              + +  +   S+N  +      ISG++   F  LM+ KA ++GM NT Y N SG    
Sbjct: 120 PVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQAS 179

Query: 183 ------------HDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIIT 225
                        + + ++TARD A L     KN+P+  +                    
Sbjct: 180 AFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPKILEITNKPVVKTMVGTPYEETFE 239

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            +N  L         +DG+KTG +   GFN + +++  D  ++ V++G+   Q +D +
Sbjct: 240 AYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDGE 297


>gi|255970680|ref|ZP_05421266.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis T1]
 gi|255961698|gb|EET94174.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis T1]
          Length = 441

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 61/257 (23%), Positives = 114/257 (44%), Gaps = 34/257 (13%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++IV+D +  ++   +Q +    PAS+ K+MT+Y+ FE ++  K  ++T +  ++     
Sbjct: 9   AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DV 66

Query: 114 NPSKLYLKEKTYFT------TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKA 166
           + SK+Y       T        + +  +   S+N  +      ISG++   F  LM+ KA
Sbjct: 67  DISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKA 126

Query: 167 KKIGMQNTIYKNASGL---------------HDKNQITTARDQAILGILLRKNFPQYYKY 211
            ++GM NT Y N SG                 + + ++TARD A L     KN+P+  + 
Sbjct: 127 AELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEI 186

Query: 212 F-----SIRKFRYRNRIITNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
                               +N  L         +DG+KTG +   GFN + +++  D  
Sbjct: 187 TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFR 246

Query: 263 IVAVVMGMPTSQERDQK 279
           ++ V++G+   Q +D +
Sbjct: 247 LIEVILGVGNWQNQDGE 263


>gi|191637034|ref|YP_001986200.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus casei BL23]
 gi|190711336|emb|CAQ65342.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus casei BL23]
 gi|327381061|gb|AEA52537.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus casei LC2W]
 gi|327384236|gb|AEA55710.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus casei BD-II]
          Length = 436

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 59/305 (19%), Positives = 130/305 (42%), Gaps = 38/305 (12%)

Query: 24  IQRNIQLMGKILFLSIIMISMA------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP 77
           ++  I  +  +L +     +M+      S+ +     +++ I+    ++   K      P
Sbjct: 5   MRGLIAAVVAVLMIGGAAPAMSVSAAESSDTNLVDAKAAVAIEPTTGKILYAKNASSVLP 64

Query: 78  -ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGI 132
            AS+TKM+++ ++ + ++S K++ + ++ ++         ++ S + L+    ++  +  
Sbjct: 65  IASMTKMLSIELVLDAIKSGKINWDDKVTLNNAIWELSQNRDLSNVPLRRDGSYSVRELY 124

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL---------- 182
            A +  SAN       E ++GS++KF   M+ K    G+ +    N +GL          
Sbjct: 125 DASLIYSANAAMMLLAEKVAGSQEKFVSQMTAKLNSWGITDAKIVNVTGLNNSQLKDAKV 184

Query: 183 ----HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL-- 231
                +     +A+D A +   L K+ P+  K  SI K  +R        + N N +L  
Sbjct: 185 PGTDDNAENEMSAKDMAQVAQHLLKDHPEVLKTTSIAKQTFRKGTSDAIDMENWNWMLKG 244

Query: 232 ----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE--RDQKALELIT 285
               +K   +DG+KTG +  +G     ++      I+ V++      +  R  +  +L+T
Sbjct: 245 LVSYDKDLPVDGLKTGTSDAAGDCFTGTVEKNGMRIITVILHANGDAKTRRFDQTKKLMT 304

Query: 286 SFLEK 290
           + LE 
Sbjct: 305 NVLEN 309


>gi|224534683|ref|ZP_03675255.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia spielmanii A14S]
 gi|224513931|gb|EEF84253.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia spielmanii A14S]
          Length = 401

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 67/265 (25%), Positives = 113/265 (42%), Gaps = 26/265 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             S +++D +  ++   K+      PASLTK++T+Y        + + L + +P+S +A 
Sbjct: 40  AKSIVLMDFDTKRVLYSKKPNLVFPPASLTKIVTIYTALIEAGKRNVKLKSIVPISDSAS 99

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
              A  N S ++L++      E+ +  L   S ND S A  EF+ G    F  LM+    
Sbjct: 100 YYNAPLNSSLMFLEKGQIVNFEEILKGLSISSGNDASIAIAEFVVGDLNSFVNLMNINVM 159

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------- 220
            +G+ N  +   SG  ++N   TA D A       + F       S++ F Y        
Sbjct: 160 NLGLFNMHFVEPSGYSNEN-KITALDMAFFVKSYIEKFKFMLNIHSLKYFVYPKSKNLGT 218

Query: 221 -------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP-- 271
                  N    N N L++     DG+KTGY + SG N+V + +  D  ++AVV+G+   
Sbjct: 219 TLASKFLNLKQRNANLLIDDYPYSDGLKTGYIKESGLNLVATAQKGDRRLIAVVLGVEKG 278

Query: 272 ----TSQERDQKALELITSFLEKKT 292
                 + R   A  L      + +
Sbjct: 279 INRSGERMRALIAKNLFEYGFNEYS 303


>gi|118476851|ref|YP_894002.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
           Hakam]
 gi|118416076|gb|ABK84495.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
           Hakam]
          Length = 443

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 72/351 (20%), Positives = 141/351 (40%), Gaps = 37/351 (10%)

Query: 6   IQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISM---------ASELHAKPKYS- 55
           +Q  + ++ +      +  ++ +  +  I    +  +++           ++   PK   
Sbjct: 1   MQFLSCESIVKRESHMVNFKKILAFITVICLFFLTPMTLRAETNIGVNPEQVAPPPKEGP 60

Query: 56  ------SIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
                 +  ID     +   K    R +PAS+TK++T  ++ E+ +        Q   S+
Sbjct: 61  NVFSQFATTIDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQ 115

Query: 109 TAATQNPSKLYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
            A  Q  S   ++            ++ L+  SANDVS A  E I GS + FA +M+ +A
Sbjct: 116 LALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERA 175

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT- 225
           K++G  ++ +   +GLHD N  TT  D A++   ++K +P+  +  + ++        T 
Sbjct: 176 KQLGATDSHFVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTV 234

Query: 226 ---NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKA 280
              N +          G KTG+T  +   +V       + I+ VVM     +  E  ++ 
Sbjct: 235 SIFNKSTYFEN-PFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQM 293

Query: 281 LELITSFLEKKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
            +       K+T+      HQ+T   +    + L+KS  +   K      K
Sbjct: 294 ADYSFGQFVKQTVLDKHSWHQKTTYLNKDIDSELEKSAELMLKKDEGKNVK 344


>gi|254851885|ref|ZP_05241233.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|258605180|gb|EEW17788.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
          Length = 272

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 113/242 (46%), Gaps = 7/242 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++ V  V   +    +  +   P ASL+K+MT +++ E + + +L  +  + + +   
Sbjct: 31  ANAAAVYSVKNGKPLYEQNADKVMPIASLSKLMTAFLVLEAVDNNELSWDETLDLVRLDD 90

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S   + +K  ++      A++T SAND +   G+ + G    F   M+ +A K+GM
Sbjct: 91  PSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLGDRLDG--ADFPKKMNRQATKLGM 148

Query: 172 QN-TIYKNASGLHDKNQ--ITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNH 227
            + T + +ASGL    +  ++T +D  +L   L    P+  +  S           + + 
Sbjct: 149 SSRTNFVSASGLDVDGKTAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDEGAKLEST 208

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           N LL  +  +DG+KTG+T  +G+  + +       ++++V+   T+++R +   +L+   
Sbjct: 209 NDLLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVG 268

Query: 288 LE 289
            +
Sbjct: 269 FK 270


>gi|257083197|ref|ZP_05577558.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis Fly1]
 gi|256991227|gb|EEU78529.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis Fly1]
          Length = 475

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 126/297 (42%), Gaps = 35/297 (11%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE- 73
           L    G+ + Q  +    + +      +    +    PK ++IV+D +  ++   +Q + 
Sbjct: 4   LVVSCGAFFAQPTVTHAEEDITAIAKKMGTTLKPDGIPK-AAIVVDADSGEILWSQQPDL 62

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT------ 127
              PAS+ K+MT+Y+ FE ++  K  ++T +  ++     + SK+Y       T      
Sbjct: 63  AWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DVDISKIYAISNNKITLGVAYP 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL---- 182
             + +  +   S+N  +      ISG++   F  LM+ KA ++GM NT Y N SG     
Sbjct: 121 VRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGAQASA 180

Query: 183 -----------HDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITN 226
                       + + ++TARD A L     KN+P+  +                     
Sbjct: 181 FNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEETFEA 240

Query: 227 HNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           +N  L         +DG+KTG +   GFN + +++  D  ++ V++G+   Q +D +
Sbjct: 241 YNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDGE 297


>gi|307288894|ref|ZP_07568867.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
           TX0109]
 gi|306500166|gb|EFM69510.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
           TX0109]
 gi|315164420|gb|EFU08437.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
           TX1302]
          Length = 493

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 61/257 (23%), Positives = 113/257 (43%), Gaps = 34/257 (13%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++IV+D +  ++   +Q +    PAS+ K+MT+Y+ FE ++  K  ++T +  ++     
Sbjct: 61  AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DV 118

Query: 114 NPSKLYLKEKTYFT------TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKA 166
           + SK+Y       T        + +  +   S+N  +      ISG +   F  LM+ KA
Sbjct: 119 DISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGDQPTDFVHLMNQKA 178

Query: 167 KKIGMQNTIYKNASGL---------------HDKNQITTARDQAILGILLRKNFPQYYKY 211
            ++GM NT Y N SG                 + + ++TARD A L     KN+P+  + 
Sbjct: 179 AELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEI 238

Query: 212 F-----SIRKFRYRNRIITNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
                               +N  L         +DG+KTG +   GFN + +++  D  
Sbjct: 239 TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFR 298

Query: 263 IVAVVMGMPTSQERDQK 279
           ++ V++G+   Q +D +
Sbjct: 299 LIEVILGVGNWQNQDGE 315


>gi|256761046|ref|ZP_05501626.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis T3]
 gi|256682297|gb|EEU21992.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis T3]
          Length = 441

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 126/307 (41%), Gaps = 51/307 (16%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++IV+D +  ++   +Q +    PAS+ K+MT+Y+ FE ++  K  ++T +  ++     
Sbjct: 9   AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DV 66

Query: 114 NPSKLYLKEKTYFT------TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKA 166
           + SK+Y       T        + +  +   S+N  +      ISG++   F  LM+ KA
Sbjct: 67  DISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKA 126

Query: 167 KKIGMQNTIYKNASGL---------------HDKNQITTARDQAILGILLRKNFPQYYKY 211
            ++GM NT Y N SG                 + + ++TARD A L     KN+P+  + 
Sbjct: 127 AELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEI 186

Query: 212 F-----SIRKFRYRNRIITNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
                               +N  L         +DG+KTG +   GFN + +++  D  
Sbjct: 187 TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFR 246

Query: 263 IVAVVMGMPTSQ------ERDQKALELITSFLEK-----------KTLKHQQTHRKDNLS 305
           ++ V++G+   Q      ER      L+                 +T+ H++    ++L 
Sbjct: 247 LIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLY 306

Query: 306 STSLKKS 312
               K S
Sbjct: 307 GVVPKGS 313


>gi|146305107|ref|YP_001185572.1| D-alanyl-D-alanine endopeptidase [Pseudomonas mendocina ymp]
 gi|145573308|gb|ABP82840.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Pseudomonas mendocina ymp]
          Length = 300

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 59/267 (22%), Positives = 108/267 (40%), Gaps = 15/267 (5%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYI 88
           L+   L +S +  + A         S+++ID+   +       + R P AS+TK+MT  +
Sbjct: 11  LLSAGLVVSNLQAAPAQPQQELAAGSALLIDLKTGKELYSSNPDLRLPVASVTKLMTAMV 70

Query: 89  IFEYLQSKKLHLNTQIPVS-KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + +     KL L+  +P++ +           ++  +  +    +   +  S N  + + 
Sbjct: 71  VLDA----KLPLDEVLPITIRDTKEMQGVYSRVRIGSEISRRDMLHLALMSSENRAAASL 126

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
                G    F   M+ KAK +GM N+ +   +G+ ++N + TARD A L I   + +P 
Sbjct: 127 AHHYPGGHVAFVAAMNAKAKALGMHNSHFVEPTGMSERN-VATARDLA-LMIKATQQYPL 184

Query: 208 YYKYF--SIRKFRYRNRIIT----NHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKD 260
             ++   S     +R    T    N N L+ K   +I   KTG+T  +G  +V       
Sbjct: 185 IGQFSTDSEATVTFRKPTYTLGFRNTNALVRKPDWDIGMSKTGFTNAAGRCLVMLTSMNQ 244

Query: 261 DPIVAVVMGMPTSQERDQKALELITSF 287
             +  VV+G          A  L    
Sbjct: 245 RSVAFVVLGAFGKYTHMADANRLKRWM 271


>gi|260588732|ref|ZP_05854645.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
           20583]
 gi|331084099|ref|ZP_08333206.1| hypothetical protein HMPREF0992_02130 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540914|gb|EEX21483.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
           20583]
 gi|330402461|gb|EGG82031.1| hypothetical protein HMPREF0992_02130 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 340

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 69/235 (29%), Positives = 106/235 (45%), Gaps = 18/235 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-- 111
           ++IV DV  N++   K  E R YPAS+TK++TL I  E L    L    QIPV +  A  
Sbjct: 85  AAIVKDVQNNKVLASKNAEERIYPASMTKILTLLIAVEELSD--LEEKVQIPVDEVLAEY 142

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            +  S    +     + +  +  L+  S  +  TA    ISGSE+ FA  M+ +AK++GM
Sbjct: 143 ERGASMAGFQPGEKVSVKDLLYGLMLPSGAECCTALACRISGSEEAFAEKMNERAKELGM 202

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-------RNRII 224
            N+ + NASGLH++   TT  D  IL     KN   +Y+ F+ R +              
Sbjct: 203 LNSHFVNASGLHEEEHYTTVTDIMILLEQAIKN-ETFYEVFTTRSYTTAPTAAEPNGITF 261

Query: 225 TNH-----NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
            +      + L      I G KTG+T  +G  + +    +    + V  G   + 
Sbjct: 262 ESTMYDKKSTLEVTDGEILGGKTGFTNAAGQCLASLAMVEGQEYILVTAGADGNH 316


>gi|300763430|ref|ZP_07073428.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           N1-017]
 gi|300515707|gb|EFK42756.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           N1-017]
          Length = 272

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 113/242 (46%), Gaps = 7/242 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++ V  V   +    +  +   P ASL+K+MT +++ E + + +L  +  + + +   
Sbjct: 31  ANAAAVYSVKNGKPLYEQNADKVMPIASLSKLMTAFLVLEAVDNNELSWDETLDLVRLDD 90

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S   + +K  ++      A++T SAND +   G+ + G    F   M+ +A K+GM
Sbjct: 91  PSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLGDRLDG--ADFPKKMNRQATKLGM 148

Query: 172 QN-TIYKNASGLHDKNQ--ITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNH 227
            + T + +ASGL    +  ++T +D  +L   L    P+  +  S           + + 
Sbjct: 149 SSRTNFVSASGLDVDGKTAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDEGAKLEST 208

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           N LL  +  +DG+KTG+T  +G+  + +       ++++V+   T+++R +   +L+   
Sbjct: 209 NDLLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVG 268

Query: 288 LE 289
            +
Sbjct: 269 FK 270


>gi|297569645|ref|YP_003690989.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925560|gb|ADH86370.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 365

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 121/243 (49%), Gaps = 8/243 (3%)

Query: 53  KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++V+D    ++      D+PR PAS  K++T  I  + L+ ++L     +  S  AA
Sbjct: 95  ARSAVVVDPTTGRLLFALNPDQPRQPASTIKIVTALIAMQSLRDQEL-----VSTSARAA 149

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               SK+YL+    +     I A +  SAND S A  E I+GSE  FA LM++KA+ +G 
Sbjct: 150 RMPRSKIYLQAGRSYRAGDLINATLLSSANDASVALAERIAGSEAAFARLMTSKARAMGA 209

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-NRIITNHNKL 230
            NT+  N++GL  + Q +TARD AI+     +N P++ +            + +  +N+ 
Sbjct: 210 TNTVIHNSNGLTARGQQSTARDLAIILHRSMQN-PEFARRLGTTSASTNFGQTLRTNNRA 268

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L +++  +G KTG+TR +    V   +  +  ++  +MG  T  E   + +E     L  
Sbjct: 269 LWQINGAEGGKTGFTRAARQTYVGKFKRGNQELIVALMGSDTMWEDVGQLVEYGFRQLRD 328

Query: 291 KTL 293
            T+
Sbjct: 329 GTM 331


>gi|255974260|ref|ZP_05424846.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis T2]
 gi|255967132|gb|EET97754.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis T2]
          Length = 441

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 126/307 (41%), Gaps = 51/307 (16%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++IV+D +  ++   +Q +    PAS+ K+MT+Y+ FE ++  K  ++T +  ++     
Sbjct: 9   AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQK--DV 66

Query: 114 NPSKLYLKEKTYFT------TEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKA 166
           + SK+Y       T        + +  +   S+N  +      ISG++   F  LM+ KA
Sbjct: 67  DISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKA 126

Query: 167 KKIGMQNTIYKNASGL---------------HDKNQITTARDQAILGILLRKNFPQYYKY 211
            ++GM NT Y N SG                 + + ++TARD A L     KN+P+  + 
Sbjct: 127 AELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEI 186

Query: 212 F-----SIRKFRYRNRIITNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
                               +N  L         +DG+KTG +   GFN + +++  D  
Sbjct: 187 TNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFR 246

Query: 263 IVAVVMGMPTSQ------ERDQKALELITSFLEK-----------KTLKHQQTHRKDNLS 305
           ++ V++G+   Q      ER      L+                 +T+ H++    ++L 
Sbjct: 247 LIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLY 306

Query: 306 STSLKKS 312
               K S
Sbjct: 307 GVIPKGS 313


>gi|254520208|ref|ZP_05132264.1| D-alanyl-D-alanine carboxypeptidase [Clostridium sp. 7_2_43FAA]
 gi|226913957|gb|EEH99158.1| D-alanyl-D-alanine carboxypeptidase [Clostridium sp. 7_2_43FAA]
          Length = 418

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 71/310 (22%), Positives = 133/310 (42%), Gaps = 21/310 (6%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMM 84
           R I L    +     +   A+EL       ++++D    ++   K +  +Y PAS TK+M
Sbjct: 2   RRIFLFTAFICSVFTINVKATELPTVYSEGAVLMDGRTGKVIYSKNEHTQYEPASTTKVM 61

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T  ++ E  +     L  ++ +++     + S + + +   +T E+ +L L+  S ND +
Sbjct: 62  TALVVLENTK-----LTDKVTINEKPTLVDGSAIGIAKGEVYTVEELMLGLLLESGNDCA 116

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  E +SGS ++FA LM+ KAK++G  +T +KN SGLH+   +TTA D A++     +N
Sbjct: 117 EALAEHVSGSNEEFAKLMNAKAKELGALDTTFKNPSGLHEDGHVTTAYDLALIMRAAYQN 176

Query: 205 F-------PQYYKYFSIRKFRYRNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNI 252
                    + +KY +        +  TN N+L N+            K GYT  +    
Sbjct: 177 EDLVRIAQTESHKYVNHPFSDGSEKWATNRNQLFNEYTPYYYQYAYIGKNGYTPEANHTY 236

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHRKDNLSSTSLKK 311
             +    +  +V  ++              L        +T+K    ++ D L +  +  
Sbjct: 237 TATAMKDEQFLVVALLNATDKDNFYTNIGPLFDYGFDNFETIK--LINKNDVLDTYKIND 294

Query: 312 SLMIKKLKRT 321
            + I  L + 
Sbjct: 295 DISIPLLAKD 304


>gi|258651532|ref|YP_003200688.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Nakamurella
           multipartita DSM 44233]
 gi|258554757|gb|ACV77699.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Nakamurella
           multipartita DSM 44233]
          Length = 550

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 105/252 (41%), Gaps = 14/252 (5%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLN 101
           ++ S++ A    + ++ D++  ++   K    RY PAS  K++T  ++ + L     +L+
Sbjct: 104 ALPSDISA---GAWLIADLDTGEVLAAKDPHGRYRPASTLKLLTAQVMLKNL----TNLD 156

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
             +  ++    Q+ +++ ++    +T    +  L+  S ND + A      G +K     
Sbjct: 157 QVVQGTQADTAQDGTRVGIEAGGTYTVRDLLSYLVMISGNDAANALARTNGGYDKT-IAD 215

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL--LRKNFPQYYKYFSIR--KF 217
           M+  AK +G  +T     SGL    Q T+A D A+          FP+      IR    
Sbjct: 216 MNATAKALGALDTRAATPSGLDGPGQSTSAYDLALFAKADMAIAPFPEIIARPDIRVPAA 275

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM-GMPTSQER 276
                I  N N+LL +     G KTG+T ++G   V         +V  +M G    + +
Sbjct: 276 SGEGYIAANDNQLLAQYPGALGGKTGFTDDAGNTFVGMAAKDGRRLVVTMMHGTQQPRRQ 335

Query: 277 DQKALELITSFL 288
             +A  L+    
Sbjct: 336 WMQAASLLDWGF 347


>gi|116493792|ref|YP_805526.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus casei ATCC 334]
 gi|227534583|ref|ZP_03964632.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239631047|ref|ZP_04674078.1| D-alanyl-D-alanine carboxypeptidase dacA [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|301065368|ref|YP_003787391.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus casei str.
           Zhang]
 gi|116103942|gb|ABJ69084.1| D-Ala-D-Ala carboxypeptidase A, Serine peptidase, MEROPS family S11
           [Lactobacillus casei ATCC 334]
 gi|227187832|gb|EEI67899.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239527330|gb|EEQ66331.1| D-alanyl-D-alanine carboxypeptidase dacA [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|300437775|gb|ADK17541.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus casei str.
           Zhang]
          Length = 436

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 59/305 (19%), Positives = 130/305 (42%), Gaps = 38/305 (12%)

Query: 24  IQRNIQLMGKILFLSIIMISMA------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP 77
           ++  I  +  +L +     +M+      S+ +     +++ I+    ++   K      P
Sbjct: 5   MRGLIAAVVAVLMIGGAAPAMSVSAAESSDTNLVDAKAAVAIEPTTGKILYAKNASSVLP 64

Query: 78  -ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGI 132
            AS+TKM+++ ++ + ++S K++ + ++ ++         ++ S + L+    ++  +  
Sbjct: 65  IASMTKMLSIELVLDAIKSGKINWDDKVTLNNAIWELSQNRDLSNVPLRRDGSYSVRELY 124

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL---------- 182
            A +  SAN       E ++GS++KF   M+ K    G+ +    N +GL          
Sbjct: 125 DASLIYSANAAMMLLAEKVAGSQEKFVSQMTAKLNSWGITDAKIVNVTGLNNSQLKDAKV 184

Query: 183 ----HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLL-- 231
                +     +A+D A +   L K+ P+  K  SI K  +R        + N N +L  
Sbjct: 185 PGTDDNAENEMSAKDMAQVAQHLLKDHPEVLKTTSIAKQTFRKGTSDAIDMENWNWMLKG 244

Query: 232 ----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE--RDQKALELIT 285
               +K   +DG+KTG +  +G     ++      I+ V++      +  R  +  +L+T
Sbjct: 245 LVSYDKNLPVDGLKTGTSDAAGDCFTGTVEKNGMRIITVILHANGDAKTRRFDQTKKLMT 304

Query: 286 SFLEK 290
           + LE 
Sbjct: 305 NVLEN 309


>gi|217958851|ref|YP_002337399.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH187]
 gi|217065525|gb|ACJ79775.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH187]
          Length = 428

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 125/283 (44%), Gaps = 19/283 (6%)

Query: 59  IDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 55  IDAKTGDVLYDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 109

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ 
Sbjct: 110 YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSH 169

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIITNHNKLLN- 232
           +   +GLHD N  TT  D A++   ++K +P+  +  + ++       + ++  NK +  
Sbjct: 170 FVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSIYF 228

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLEK 290
           +     G KTG+T  +   +V       + I+ VVM     +  E  ++  +       K
Sbjct: 229 ENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMADYSFGQFVK 288

Query: 291 KTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           +T+      HQ+T   +    + L+KS  +   K      + I
Sbjct: 289 QTVLDKHSWHQKTTYLNKDIDSELEKSAEVMLKKDEGKNVRTI 331


>gi|315226481|ref|ZP_07868269.1| serine-type D-Ala-D-Ala carboxypeptidase [Parascardovia denticolens
           DSM 10105]
 gi|315120613|gb|EFT83745.1| serine-type D-Ala-D-Ala carboxypeptidase [Parascardovia denticolens
           DSM 10105]
          Length = 483

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 67/340 (19%), Positives = 134/340 (39%), Gaps = 39/340 (11%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYS---------SIVIDVNKNQMTGFKQ 71
           +  +  ++ ++  +L  S   ++ ++   + P  S         +  I+    ++   + 
Sbjct: 18  ARALLASVMVVIVLLLASRFPLAASAAETSSPSTSHMPHVAAAHAYAIEYQTGRVLLDQD 77

Query: 72  -DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT---AATQNPSKLYLKEKTYFT 127
            DEP   AS+TK++TLY+ ++ +   KL  +T++ VS      AT   +      +  FT
Sbjct: 78  GDEPAGIASMTKLITLYLTYKAVAQGKLTWSTKVHVSDYSYQVATNPLTTSADMSRREFT 137

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD--- 184
               + A +  SAN  + +  E I GSE KF  LM  + +  G+ +    NASGL++   
Sbjct: 138 VSDLVNAAMLPSANSAAISLAERIGGSEPKFVDLMRAQVRAWGITDARIYNASGLNNSFL 197

Query: 185 -----------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
                           +A+D AI+   L  ++P         +  +  + I+  N +L  
Sbjct: 198 GSNIYPGSSSKAENALSAKDMAIVAWHLIHDYPSILTISKKTQASFGGKTISTTNHMLPG 257

Query: 234 ----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ----ERDQKALELIT 285
                  +DG+KTG T  +G     +   K   ++AVV     +      R +    L  
Sbjct: 258 EEAAYPGVDGLKTGTTDEAGACFTATALVKGMRVIAVVQKADKADADPLARFKAMKTLFD 317

Query: 286 SFLEKK----TLKHQQTHRKDNLSSTSLKKSLMIKKLKRT 321
              +       +   + ++   ++    ++  +I    R 
Sbjct: 318 YCYQAYRMVIVVSQGKQYKGSTVAVQDGQERSVIAVADRD 357


>gi|47093271|ref|ZP_00231042.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria
           monocytogenes str. 4b H7858]
 gi|226225362|ref|YP_002759469.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes
           Clip81459]
 gi|254930914|ref|ZP_05264273.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|47018345|gb|EAL09107.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria
           monocytogenes str. 4b H7858]
 gi|225877824|emb|CAS06539.1| Putative D-alanyl-D-alanine carboxypeptidase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|293582460|gb|EFF94492.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|328468283|gb|EGF39289.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes 1816]
 gi|328469045|gb|EGF39999.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes 220]
          Length = 272

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 117/243 (48%), Gaps = 7/243 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++ V  V   +    +  +   P ASLTK+MT +++ E + + +L  + ++ + +   
Sbjct: 31  ANAAAVYSVENGEPLYEENADKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLDLVRLDD 90

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S   + +K  ++      A++T SAND +   G+ + G    F   M+N+AKK+GM
Sbjct: 91  PSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLGDRLDG--ANFPKEMNNQAKKLGM 148

Query: 172 QN-TIYKNASGLHDKNQ--ITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNH 227
            + T + +ASGL    +  ++T +D  +L   L    P+  +  S       +   + + 
Sbjct: 149 SSKTTFVSASGLDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKSSVTTDKGAKLEST 208

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           N  L  +  +DG+KTG+T  +G+  + +       ++++V+   T+++R +   +L+   
Sbjct: 209 NDSLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVG 268

Query: 288 LEK 290
            ++
Sbjct: 269 FKE 271


>gi|301052915|ref|YP_003791126.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis CI]
 gi|300375084|gb|ADK03988.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 428

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 71/335 (21%), Positives = 135/335 (40%), Gaps = 37/335 (11%)

Query: 22  IYIQRNIQLMGKILFLSIIMISM---------ASELHAKPKYS-------SIVIDVNKNQ 65
           +  ++ +  +  I    +  +++           ++   PK         +  ID     
Sbjct: 2   VNFKKILAFITVICLFFLTPMTLRAETNIGVNPEQVAPPPKEGPNVFSQFATTIDAKTGD 61

Query: 66  MTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK--E 122
           +   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S   ++   
Sbjct: 62  ILYDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSNYQIEFQP 116

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
                    ++ L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GL
Sbjct: 117 GETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGL 176

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLNKMHNID 238
           HD N  TT  D A++   ++K +P+  +  + ++        T    N +          
Sbjct: 177 HDPNHYTTPYDMAMITRGVQK-YPEILQVMNTKRTTVTTSRQTVSIFNKSTYFEN-PYSI 234

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLEKKTL--- 293
           G KTG+T  +   +V       + I+ VVM     +  E  ++  +       K+T+   
Sbjct: 235 GGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMADYSFGQFVKQTVLDK 294

Query: 294 --KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
              HQ+T   +    + L+KS  +   K      K
Sbjct: 295 HSWHQKTTYLNKDIDSELEKSAELILKKDEGKNVK 329


>gi|206977836|ref|ZP_03238725.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           H3081.97]
 gi|206743933|gb|EDZ55351.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           H3081.97]
          Length = 428

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 125/283 (44%), Gaps = 19/283 (6%)

Query: 59  IDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 55  IDAKTGDVLYDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 109

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ 
Sbjct: 110 YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSH 169

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIITNHNKLLN- 232
           +   +GLHD N  TT  D A++   ++K +P+  +  + ++       + ++  NK +  
Sbjct: 170 FVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSIYF 228

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLEK 290
           +     G KTG+T  +   +V       + I+ VVM     +  E  ++  +       K
Sbjct: 229 ENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMADYSFGQFVK 288

Query: 291 KTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           +T+      HQ+T   +    + L+KS  +   K      + I
Sbjct: 289 QTVLDKHSWHQKTTYLNKDIDSELEKSAEVMLKKDEGKNVRTI 331


>gi|254824823|ref|ZP_05229824.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|293594063|gb|EFG01824.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
          Length = 272

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 117/243 (48%), Gaps = 7/243 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++ V  V   +    +  +   P ASLTK+MT +++ E + + +L  + ++ + +   
Sbjct: 31  ANAAAVYSVENGEPLYEENADKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLDLVRLDD 90

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S   + +K  ++      A++T SAND +   G+ + G    F   M+N+AKK+GM
Sbjct: 91  PSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLGDRLDG--ANFPKEMNNQAKKLGM 148

Query: 172 QN-TIYKNASGLHDKNQ--ITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNH 227
            + T + +ASGL    +  ++T +D  +L   L    P+  +  S       +   + + 
Sbjct: 149 SSKTTFVSASGLDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKSSVTTDKGAKLEST 208

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           N  L  +  +DG+KTG+T  +G+  + +       ++++V+   T+++R +   +L+   
Sbjct: 209 NDSLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVG 268

Query: 288 LEK 290
            ++
Sbjct: 269 FKE 271


>gi|326802681|ref|YP_004320499.1| serine-type D-Ala-D-Ala carboxypeptidase [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650727|gb|AEA00910.1| serine-type D-Ala-D-Ala carboxypeptidase [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 455

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 68/264 (25%), Positives = 123/264 (46%), Gaps = 29/264 (10%)

Query: 56  SIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ- 113
           +I ID    Q+   K  +  +  ASLTK+++LY+I++ L   KL L+  +PVS   A Q 
Sbjct: 51  AIAIDQESGQILYQKDADDLHGIASLTKLLSLYVIYDQLAQGKLSLDEAVPVSPALAQQS 110

Query: 114 ---NPSKLYLKEK-TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                S + L      ++ +Q I A+I  SAN  + A  E ++GSE  F  LM+ K  ++
Sbjct: 111 QVEGLSNVPLVAGPANYSVDQLIDAVIIASANSATVALAEKVAGSEDHFIDLMAQKLDQL 170

Query: 170 GMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           G+ +    +ASGL                +    +A+  A++   L K++P       ++
Sbjct: 171 GVDDYNLVSASGLRGELRADARPGQFAESEENRVSAKSLALVVQRLLKDYPDIQSRAQVK 230

Query: 216 KFRY-----RNRIITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           +  +         +TN N+LL  M     +I G+KTG    +G+ +V +      P++ V
Sbjct: 231 EKVFQVAPDWQVTMTNSNQLLPGMTYGRQDITGLKTGTELGAGYCLVATSFINQRPVILV 290

Query: 267 VMGMPTSQERDQKALELITSFLEK 290
            +G  ++++R  +   L++     
Sbjct: 291 TLGAESNEDRFLETSRLLSDLQNN 314


>gi|315924182|ref|ZP_07920408.1| serine-type D-Ala-D-Ala carboxypeptidase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622584|gb|EFV02539.1| serine-type D-Ala-D-Ala carboxypeptidase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 454

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 66/283 (23%), Positives = 114/283 (40%), Gaps = 44/283 (15%)

Query: 30  LMGKILFLSIIMISMASELHAKPKY----SSIVIDVNKNQMTGFKQDEPR-YPASLTKMM 84
           +   +L L+  +++      A P Y    +   ++     +   + +  R YPAS TKMM
Sbjct: 1   MAVFVLILTFAVVTCLPAYAAMPSYTGDEAVYAVEEKSGDVITAQNEHKRMYPASTTKMM 60

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           T  +  +Y+      ++ Q+ +       T + SK  LK+    T  Q    L+  S ND
Sbjct: 61  TTLVALDYVAD---KMDQQVKIGDEVSLITADSSKADLKKGDTCTWRQLFYGLLLPSGND 117

Query: 143 VSTAFGEFIS---------GSEKK---FAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            + A  + I          G++K    F  LM+ KA ++ ++++ + N  GLHD N  TT
Sbjct: 118 AALAIAKNIGRAASGDRELGTDKAIDKFVSLMNRKAAQLQLEDSHFVNPHGLHDANHYTT 177

Query: 191 ARDQAILGILLRKNFPQYYKYFSIR----KFRYRNRIITNHNKLL--------------- 231
           A D   +     +N P   K    +    K +   +   N N L+               
Sbjct: 178 AADLEKISAAALEN-PTIRKIVQTKVYSCKLKSGQKKWINTNSLIISTNDLAKVRESSHN 236

Query: 232 --NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
                    G+KTG+T  +G  +V S +  D  +VAV++    
Sbjct: 237 GKQYNPYATGVKTGHTDEAGRCLVFSSKDGDKTMVAVILHSDN 279


>gi|227508596|ref|ZP_03938645.1| S11 family D-Ala-D-Ala carboxypeptidase [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227191928|gb|EEI71995.1| S11 family D-Ala-D-Ala carboxypeptidase [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 442

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 85/364 (23%), Positives = 156/364 (42%), Gaps = 40/364 (10%)

Query: 12  KTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSI----------VIDV 61
           K  +   +      R  +LM  IL L+ ++ ++     A+ K   +          V+D 
Sbjct: 6   KKLMEVTFIVRGTSRLTKLMAVILVLTCVIAALVPSATAQAKSKKLKYKFEAKEIYVMDA 65

Query: 62  NKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS---- 116
              QM   K  D+ R  ASL+K+MTLY+  + +   +L  N ++PVSK     + S    
Sbjct: 66  KSGQMLYQKNSDQRRPIASLSKLMTLYLTKKAIDQHQLSWNQKVPVSKPLIKMSKSYELG 125

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTI 175
              +K    +T +Q   A +  S+N  + A GE ++ GS  KF  LM+ +A+K G+ +  
Sbjct: 126 TFKIKRSKQYTVKQLYQAALIASSNSSAIALGELVAGGSNTKFINLMNRQAQKWGI-DAH 184

Query: 176 YKNASGLHDKN----------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
           + ++SGL + +                 + +A+  + +   +   FP   K+      + 
Sbjct: 185 FVSSSGLDNTDLTTYKLQVPGTGKKAQNMVSAKAISTVAAKVLGEFPSITKWSRKPSMKV 244

Query: 220 RNRIITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            N+++ N N+LL       K  ++DG+KTG+T  +G  +  S  +K   ++A ++   T 
Sbjct: 245 GNQVLVNSNRLLKGDAFYKKSEHVDGLKTGFTDTAGLCLTVSFWHKGRHLIATIIDSNTI 304

Query: 274 QERDQKALELITSFLEKKT-LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
               +K +  I      +T L HQ      N   ++  +       K   S+    D+  
Sbjct: 305 FSSMEKLVRAIEKNYTTETHLIHQNIFTIGNRKVSASPQDSRATIWKTESSKPSISDSYE 364

Query: 333 HSTQ 336
            +TQ
Sbjct: 365 PTTQ 368


>gi|229138063|ref|ZP_04266661.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
 gi|228645408|gb|EEL01642.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
          Length = 407

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 125/283 (44%), Gaps = 19/283 (6%)

Query: 59  IDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 34  IDAKTGDVLYDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 88

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ 
Sbjct: 89  YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSH 148

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIITNHNKLLN- 232
           +   +GLHD N  TT  D A++   ++K +P+  +  + ++       + ++  NK +  
Sbjct: 149 FVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSIYF 207

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLEK 290
           +     G KTG+T  +   +V       + I+ VVM     +  E  ++  +       K
Sbjct: 208 ENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMADYSFGQFVK 267

Query: 291 KTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           +T+      HQ+T   +    + L+KS  +   K      + I
Sbjct: 268 QTVLDKHSWHQKTTYLNKDIDSELEKSAEVMLKKDEGKNVRTI 310


>gi|313683330|ref|YP_004061068.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Sulfuricurvum
           kujiense DSM 16994]
 gi|313156190|gb|ADR34868.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sulfuricurvum
           kujiense DSM 16994]
          Length = 275

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 70/273 (25%), Positives = 123/273 (45%), Gaps = 16/273 (5%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVI-DVNKNQMTGFKQD-EPRYPASLT 81
           + +++     +L ++ +   + SE   K    ++++ ++  N++   K+      PASLT
Sbjct: 1   MLKSLIFFFLLLCITSLHAEIDSEKLDKLNVEALLVKNLKNNEILYSKEALREVKPASLT 60

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +  +L     + +SK      P+K   KE   F     I A + +S N
Sbjct: 61  KIMTATLAIEQGELTRL-----VVISKEMLQVEPTKAGYKEGEIFLLGDLINAAMIKSDN 115

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D + A    I GS + F  +M+ KA  IGM NT++ N  G    N  +T +D   L    
Sbjct: 116 DAAMAVAIAIGGSIENFNKMMNAKAASIGMVNTVFTNPCGFDIGNHHSTPQDLLTLAEYA 175

Query: 202 RKNFPQYYKYFSIRKFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
            KN P +     + +  Y      R  +   HN+LLNK     G+KTGYT  +G  ++  
Sbjct: 176 IKN-PVFNDITRLNQHTYYSLNTARKFVANTHNQLLNKYEYAVGVKTGYTSKAGPCLIAR 234

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            + +D   + V++   + + R + A E+     
Sbjct: 235 AKKEDRDCLIVMLN--SKENRWKTAKEIFEQVF 265


>gi|54022905|ref|YP_117147.1| putative penicillin-binding protein [Nocardia farcinica IFM 10152]
 gi|54014413|dbj|BAD55783.1| putative penicillin-binding protein [Nocardia farcinica IFM 10152]
          Length = 434

 Score =  189 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 56/269 (20%), Positives = 101/269 (37%), Gaps = 23/269 (8%)

Query: 37  LSIIMISMASELH-AKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
             +++   A  L       + +V D++  ++   K    RY PAS  K++   +      
Sbjct: 95  CGVVVPDDAPPLPRDISATAWMVSDLDTGEVLAAKDPHGRYRPASTIKVLLAIVALR--- 151

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
              L L+  +  ++  A  + +++ +     +T  Q + ALI  S ND + A    + G 
Sbjct: 152 --TLDLDRVVTGTQADADVDGTRVGIGPGGRYTNRQLMQALIMASGNDAAHAIAAQLGG- 208

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK----------- 203
           +K     M+  AK +   +T     SGL      T+A D ++L                 
Sbjct: 209 DKATVARMNEVAKSLSAFDTRAATPSGLDGPGMTTSAYDLSLLFREAMTIPLFAELIRTE 268

Query: 204 --NFPQYYKYFSIRKFR-YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
             +FP Y K   I     +    I N N+LL       G KTG+T ++    V +     
Sbjct: 269 QIDFPGYPKNPLIPDDTDHPGFPIGNDNQLLYNYAGALGGKTGFTDDARQTFVAAAERDG 328

Query: 261 DPIVAVVMGMPTSQER-DQKALELITSFL 288
             +V  ++       R  ++A  L+    
Sbjct: 329 RRLVVTLLKADVLPIRPWEQAARLLDYGF 357


>gi|302874922|ref|YP_003843555.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           cellulovorans 743B]
 gi|307690459|ref|ZP_07632905.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cellulovorans
           743B]
 gi|302577779|gb|ADL51791.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           cellulovorans 743B]
          Length = 349

 Score =  189 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 134/292 (45%), Gaps = 14/292 (4%)

Query: 26  RNIQLMGKILFLSIIM-ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKM 83
           RN  L+  ++ +SI   I+   ++ +    ++I +DV   ++   K      P AS TK+
Sbjct: 7   RNSFLIAVMILISISNNITAYGKVLSIDARAAIAMDVKSKRVLYEKNSVSLIPMASTTKI 66

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT  +   Y      +L+ +I +SK AA    S +        T  + +  L+ RS ND 
Sbjct: 67  MTSLVALTYG-----NLDQEITISKKAAAIRGSTVNYMAGEKVTLRELLYGLMLRSGNDA 121

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           + A  E I+G    F +LM+  A  IG  N+ +++  GL      TT  D AI+     +
Sbjct: 122 AIAIAEGIAGDVDSFLVLMNEYANLIGATNSHFESPHGLDSNQHYTTTYDLAIITSKAME 181

Query: 204 N--FPQYYKYFSIRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           N  F +     SI K      R  +N NK+L    +  G+KTGYT  +G  +V+S  Y  
Sbjct: 182 NRTFREIVGCRSIEKGASGFTRGYSNINKILFLHGDATGVKTGYTGQAGKCLVSSFNYDG 241

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           + IV +V+       R  + L++     +    K +   ++D+++  + KKS
Sbjct: 242 NDIVVIVLNC---NPRWGETLKIYNHVKDNYEYK-KLCSKEDDIAIINTKKS 289


>gi|253582538|ref|ZP_04859760.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium varium ATCC
           27725]
 gi|251835683|gb|EES64222.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium varium ATCC
           27725]
          Length = 378

 Score =  189 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 81/283 (28%), Positives = 131/283 (46%), Gaps = 16/283 (5%)

Query: 27  NIQLMGKILFLSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLT 81
           N+ L+  IL  S +               P Y +I++  +K ++   +  + +YP ASLT
Sbjct: 6   NVLLLTIILASSTVFAKEVESEVVVKEEKPSYKAILLGDDKGKIYYSENIDEKYPLASLT 65

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           KMMTL + F+ L+   + +  +I VSK +A    S++ +KE   FT E  I A    SAN
Sbjct: 66  KMMTLMVTFDQLEKGSIKMKDKIKVSKKSAQTGGSRIPMKEGEVFTLEDLIKATAIYSAN 125

Query: 142 DVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDKNQIT-----TARDQ 194
           + + A  E+I  G   KF  +M+ K+  +G++    +   +GL            T R  
Sbjct: 126 NAAYAIAEYIGKGDVDKFVKMMNKKSIDLGLEKELEFYTPAGLPSDMTKKGMDSGTTRGI 185

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNR--IITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
             L +   K + QY    S+++    +    I N N LL +   I GIKTG+    G+NI
Sbjct: 186 YKLSLEAAK-YSQYMDIASMKEATIHDGKLKIKNRNLLLGE-EGIYGIKTGHHSKVGYNI 243

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKH 295
                 +   I  VV+G PT ++RD+  L+ +  F E    + 
Sbjct: 244 SVLSDKESMQIFTVVVGGPTYKKRDESVLKKMEEFYEHYQFRK 286


>gi|312171829|emb|CBX80086.1| penicillin-binding protein 7 [Erwinia amylovora ATCC BAA-2158]
          Length = 316

 Score =  189 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 67/284 (23%), Positives = 122/284 (42%), Gaps = 30/284 (10%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYS-----------SIVIDVNKNQMTG-FKQDE 73
           R   L   +LF    +++ A+    +P+ S           ++++D+N N++      D 
Sbjct: 6   RLFLLSLAMLFSIPFLMNQAAARAHQPEVSGAVQPDIASGSAMIVDLNSNKVIYQSHPDR 65

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNT--QIPVSKTAATQNP-SKLYLKEKTYFTTEQ 130
            R  AS+TK+MT+ +  +      L L+   ++ +S T   +   S++ L   +  +   
Sbjct: 66  VRPIASITKLMTVMVTLDAH----LPLDEMLKVDISHTPQMRGIYSRVRL--NSELSRRN 119

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +L  +  S N  + +      G    F   M+ KA+ +GM +T Y   +GL  +N ++T
Sbjct: 120 MMLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKARALGMSHTRYVEPTGLAIEN-VST 178

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT--NHNKLLNK-MHNIDGIKTG 243
           ARD + L +  R+ +P   +  + R+    FR  N I+   N N L+ +   NI   KTG
Sbjct: 179 ARDLSKLLLATRR-YPLIGQLSTTREDMASFRRPNYILPFRNTNHLVYRPDWNIQLTKTG 237

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           +T  +G  +V        P+  VV+           A  L    
Sbjct: 238 FTNEAGHCLVMRTVINQRPVSLVVLDAFGKYTHFADASRLRQWM 281


>gi|189501153|ref|YP_001960623.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium
           phaeobacteroides BS1]
 gi|189496594|gb|ACE05142.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium
           phaeobacteroides BS1]
          Length = 307

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 69/282 (24%), Positives = 120/282 (42%), Gaps = 28/282 (9%)

Query: 31  MGKILFLSIIMISMASELHAKPKY------------SSIVIDVNKNQMTGFKQDEPR-YP 77
           +     LS+++++     +A                S I+ D+  +++   K    R  P
Sbjct: 4   LRVFALLSLLILAFQPGSYAGSATQPDTLDFEQEINSYILKDIGTSEILMSKNTGKRIQP 63

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK++T  +  E  +     L   + + K A    P+K   +          + A + 
Sbjct: 64  ASLTKILTSIMAIESGK-----LGDYVVIPKEATVVEPTKAGFQAGERIRLVDLVKASMV 118

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK---NQITTARDQ 194
           RS+ND + A   ++ GS + FA +M+ KA+KIGM+N+ + N +G          +TARD 
Sbjct: 119 RSSNDAAFAISIYLGGSVQGFARMMNRKARKIGMRNSNFTNPAGFDRDLYAGHYSTARDL 178

Query: 195 AILGILLRKN--FPQYYKYFSIRKFRYRNR---IITNHNKLLNKMHNIDGIKTGYTRNSG 249
             L      N  F +     SI  F    R    + + NKLL K     GIKTGYT  +G
Sbjct: 179 LRLSEYAIGNEIFNRIAALDSISFFEQNTRKKYTLKSSNKLLGKYQYAVGIKTGYTMKAG 238

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
             ++   +  +  +V V++     ++R   A ++       +
Sbjct: 239 RCLIARAKKGEKDMVLVML--KAGRKRWALAEQMFEKGFSMR 278


>gi|228990377|ref|ZP_04150342.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
           12442]
 gi|228768903|gb|EEM17501.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
           12442]
          Length = 411

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 76/322 (23%), Positives = 132/322 (40%), Gaps = 31/322 (9%)

Query: 31  MGKILFLSIIMISMA---SELHAKPKYS-------SIVIDVNKNQMTGFKQDEPR-YPAS 79
           M   LF    M   A   +E    P          ++ ID     +   K      +PAS
Sbjct: 1   MVICLFFLTPMTLYAETGTEPVPAPGPGPNVFGQFAVSIDAKTGDVLYDKNAHQHAFPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK--EKTYFTTEQGILALIT 137
           +TK++T  ++ E+ +        Q   S+ A  Q  S   L+            +  L+ 
Sbjct: 61  MTKVLTAILLMEHTKP-----EEQFTFSQPALDQEKSNYQLEFQVGETINRNTALTILMV 115

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            SANDV+ A GE I GS + FA +M+ KAK++G +++ +   +GLHD N  TTA D A++
Sbjct: 116 LSANDVAYAIGERIGGSIENFANMMNEKAKQLGAKDSHFVTPNGLHDPNHYTTAYDMAMI 175

Query: 198 GILLRKNFPQYYKYFSIRKFRYRN--RIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVT 254
              + + +P+  +  + ++       + ++  NK    +     G KTG+T  +   +V 
Sbjct: 176 TRGV-QQYPEILQAMNTKRTTVTTSRQTVSIFNKATYFENPYSIGGKTGFTNEARNTLVL 234

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALEL----ITSFLEKKTLKHQQTHRK----DNLSS 306
                 + IV VVM     +   +   ++     + F ++  L     H+K    D    
Sbjct: 235 LNEKDGNRIVNVVMASQRPEI-YEDMRQIADHSFSQFAKQMVLDKNNWHQKATYLDKNID 293

Query: 307 TSLKKSLMIKKLKRTYSQFKKI 328
             L+KS  +   K      K +
Sbjct: 294 CELEKSAELMLKKDEGKNVKTV 315


>gi|228996477|ref|ZP_04156116.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
 gi|229004129|ref|ZP_04161930.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4]
 gi|228756990|gb|EEM06234.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4]
 gi|228763109|gb|EEM12017.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
          Length = 411

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 76/322 (23%), Positives = 132/322 (40%), Gaps = 31/322 (9%)

Query: 31  MGKILFLSIIMISMA---SELHAKPKYS-------SIVIDVNKNQMTGFKQDEPR-YPAS 79
           M   LF    M   A   +E    P          ++ ID     +   K      +PAS
Sbjct: 1   MVICLFFLTPMTLYAETGTEPVPAPGPGPNVFGQFAVSIDAKTGDVLYDKNAHQHAFPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK--EKTYFTTEQGILALIT 137
           +TK++T  ++ E+ +        Q   S+ A  Q  S   L+            +  L+ 
Sbjct: 61  MTKVLTAILLMEHTKP-----EEQFTFSQPALDQEKSNYQLEFQVGETINRNTALTILMV 115

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            SANDV+ A GE I GS + FA +M+ KAK++G +++ +   +GLHD N  TTA D A++
Sbjct: 116 LSANDVAYAIGERIGGSIENFANMMNEKAKQLGAKDSHFVTPNGLHDPNHYTTAYDMAMI 175

Query: 198 GILLRKNFPQYYKYFSIRKFRYRN--RIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVT 254
              + + +P+  +  + ++       + ++  NK    +     G KTG+T  +   +V 
Sbjct: 176 TRGV-QQYPEILQAMNTKRTTVTTSRQTVSIFNKATYFENPYSIGGKTGFTNEARNTLVL 234

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALEL----ITSFLEKKTLKHQQTHRK----DNLSS 306
                 + IV VVM     +   +   ++     + F ++  L     H+K    D    
Sbjct: 235 LNEKDGNRIVNVVMASQRPEI-YEDMRQIADHSFSQFAKQMVLDKNNWHQKATYLDKNID 293

Query: 307 TSLKKSLMIKKLKRTYSQFKKI 328
             L+KS  +   K      K +
Sbjct: 294 CELEKSAELMLKKDEGKNVKTV 315


>gi|153854350|ref|ZP_01995649.1| hypothetical protein DORLON_01644 [Dorea longicatena DSM 13814]
 gi|149753125|gb|EDM63056.1| hypothetical protein DORLON_01644 [Dorea longicatena DSM 13814]
          Length = 536

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 122/294 (41%), Gaps = 30/294 (10%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           ++IV+D     +   K  DE  YPAS+TK++T  I  +Y      +L+ ++  S    + 
Sbjct: 97  AAIVMDAGTGSILYAKNIDEHEYPASITKVLTSLIALKYG-----NLSDKVTFSNDCISF 151

Query: 113 --QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS----EKKFAILMSNKA 166
                S + LKE    + EQ + A +  SAN+ + A  E +  +       F   M+ + 
Sbjct: 152 MQPGDSSVGLKEGNVISLEQALYATLLASANEAAYAVAENVGKNAGHDYDWFIQQMNEEC 211

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF------RYR 220
           K +G +N+ + NA+GLHD N  T ARD A++G  + + +P++ K    + +         
Sbjct: 212 KSLGGKNSNFVNANGLHDDNHYTCARDMALIGREIWR-YPEFLKICQEQSYKIPASDTTE 270

Query: 221 NRIITNHNKLL-----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
             +   H+K+L     N    +   KTGYT N+   ++T     +  +V VV+       
Sbjct: 271 EHVFPQHHKMLIKENKNYYQYVVAGKTGYTSNALSTLITLADNGNMKLVCVVLRTHGVNI 330

Query: 276 RDQKALELITSFLEK----KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQF 325
                  L           +    ++    +   S +  +S +  +   +    
Sbjct: 331 -YPDTKNLFEYAFNNFQKIQVADEKKPDEVEKFISAADSQSAVSAQSDGSEDTE 383


>gi|308232419|ref|ZP_07415998.2| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu001]
 gi|308371314|ref|ZP_07424530.2| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu003]
 gi|308372505|ref|ZP_07428899.2| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu004]
 gi|308373707|ref|ZP_07433402.2| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu005]
 gi|308376077|ref|ZP_07445998.2| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu007]
 gi|308378277|ref|ZP_07482095.2| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu009]
 gi|308213997|gb|EFO73396.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu001]
 gi|308329169|gb|EFP18020.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu003]
 gi|308333002|gb|EFP21853.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu004]
 gi|308336624|gb|EFP25475.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu005]
 gi|308344359|gb|EFP33210.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu007]
 gi|308353021|gb|EFP41872.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu009]
          Length = 392

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 97/260 (37%), Gaps = 15/260 (5%)

Query: 39  IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKK 97
           I     A         + +V D++   +   +    R+ PAS+ K+    +    + +  
Sbjct: 67  ITAPGSAPAPGDVSAEAWLVADLDSGAVIAARDPHGRHRPASVIKV---LVAMASINT-- 121

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           L LN  +  +   A    +K+ +     +T  Q +  L+  S ND + A    + G    
Sbjct: 122 LTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAA 181

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
               ++  A K+G ++T     SGL      T+A D  +      +N P +    + R F
Sbjct: 182 -LEKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQN-PVFADIVATRTF 239

Query: 218 RY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM-GM 270
            +          + N N+LL       G KTGYT ++G   V +       ++ V++ G 
Sbjct: 240 DFPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGT 299

Query: 271 PTSQERDQKALELITSFLEK 290
                  ++A  L+      
Sbjct: 300 RQPIPPWEQAAHLLDYGFNT 319


>gi|295090182|emb|CBK76289.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cf.
           saccharolyticum K10]
          Length = 352

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 63/258 (24%), Positives = 114/258 (44%), Gaps = 26/258 (10%)

Query: 41  MISMASELHAKPKYS--SIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKK 97
           ++   +E+  +  YS  +I++D++   +   K   +  YPASLTK+MT  +  E  +   
Sbjct: 79  IVPQMAEIDLENLYSPYAILVDLDSGTVLKEKNSTDRIYPASLTKIMTAILAIENTED-- 136

Query: 98  LHLNTQI----PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             L   +     +      QN S    +       +  +  ++  S  +   AF + ISG
Sbjct: 137 --LEEIVQLPDEIFPPLYAQNASMAGFQPGEEVRLKDLLYGVLIPSGAECCLAFADRISG 194

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK--- 210
           SE++F  LM++KA+++GM+NT + N++GLHD    +T  D +IL     KN  +Y++   
Sbjct: 195 SEEEFVSLMNDKAQELGMKNTHFTNSTGLHDPEHYSTVEDISILLQYALKN--EYFRDVF 252

Query: 211 ---YFSIRKFRYRNRIITNHNKLLNKMH-------NIDGIKTGYTRNSGFNIVTSLRYKD 260
               +S           T H+ +   M         I G KTGYT  +G  + +  +   
Sbjct: 253 TSSRYSTLPSEQHPEGFTFHSTMFKYMDSTEVTGGEILGGKTGYTEEAGLCLASLAQVNG 312

Query: 261 DPIVAVVMGMPTSQERDQ 278
              + V      + + +Q
Sbjct: 313 KEYILVTAKANGTHQTEQ 330


>gi|291562538|emb|CBL41354.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
           SS3/4]
          Length = 528

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 60/294 (20%), Positives = 118/294 (40%), Gaps = 33/294 (11%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASELHAKPKYSSI------VIDVNKNQMTGFKQDE-PR 75
           + ++  +++  +L  + +    A      P  + I      V+DV+   M   +      
Sbjct: 5   FKKKLAKVLCGVLVFTQLGTMQAFARPDWPSDTGIEAEAGAVMDVDTGTMLFGQNSHVEY 64

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTEQG 131
           YPAS+TK++T  ++ E+       L   +  S  A       + +KL L      T E  
Sbjct: 65  YPASITKILTALVVLEHAD-----LTDTVTYSDKAMNSVEVDSGNKLSLVAGDTMTVEDC 119

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + AL+  S N  + A  E ++GS   F  +M+ K  ++G   + + N SGL++ +Q+ TA
Sbjct: 120 LYALLLASVNQAANALAEHVAGSIPDFVDMMNAKISELGCTESHFANPSGLNNDDQVVTA 179

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-------ITNHNKLL--------NKMHN 236
            D   +      N P+  +  S + ++            + N ++L+             
Sbjct: 180 FDMTKIAAAAYSN-PKLLEISSAKSWKVGPTTNNPDGASVRNEHRLVITEDTSSEYYCPE 238

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
               KTGY   +G  +VT        +V+V++   + ++       L+   L +
Sbjct: 239 AVAGKTGYLLKAGNTLVTYGEKDGRRVVSVILKG-SPRQYFIDGKSLLQFGLNR 291


>gi|94310149|ref|YP_583359.1| murein-DD-endopeptidase [Cupriavidus metallidurans CH34]
 gi|93354001|gb|ABF08090.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Cupriavidus
           metallidurans CH34]
          Length = 393

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 61/264 (23%), Positives = 113/264 (42%), Gaps = 13/264 (4%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++V+D N N++   K      P AS+TK+MT  ++ +     +L ++  + V++      
Sbjct: 123 ALVMDQNTNEVLFQKNPTAVLPIASITKLMTALVVMDA----RLPMDEMLTVTEEDRDTE 178

Query: 115 P-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   L+  T  T ++ +L  +  S N  ++A G    G    F   M+ KA+++GM +
Sbjct: 179 KHSSSRLRFGTQLTRQEMLLLALMSSENRAASALGRNYPGGLPAFVGAMNRKARELGMSD 238

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           + + +++GL   N +++A D A L     +N P   +Y +  +       R     + N+
Sbjct: 239 SHFVDSNGLSSSN-VSSAMDLARLVNAAYRN-PTIREYSTQPEHEVTVFGRPMHYVSTNR 296

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           L+     +I   KTGY   +G  +V   R  D  +V V +       R   A  + +   
Sbjct: 297 LVRGGNWDIGLQKTGYISEAGQCLVMQTRVNDRNVVMVFLDSVGKLSRFADATRVRSWLE 356

Query: 289 EKKTLKHQQTHRKDNLSSTSLKKS 312
            +     Q      N + T   KS
Sbjct: 357 HQPATSAQPRPFPSNPNLTQGPKS 380


>gi|24378762|ref|NP_720717.1| putative D-alanyl-D-alanine carboxypeptidase; penicillin-binding
           protein [Streptococcus mutans UA159]
 gi|24376631|gb|AAN58023.1|AE014874_9 putative D-alanyl-D-alanine carboxypeptidase; penicillin-binding
           protein [Streptococcus mutans UA159]
          Length = 414

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 77/335 (22%), Positives = 149/335 (44%), Gaps = 39/335 (11%)

Query: 30  LMGKILFLSIIMISM------ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTK 82
           +M KI+ L  I+IS+      A E        +I ++ N  ++   K  +     AS+TK
Sbjct: 1   MMKKIVCLLFILISLIGFGVKAEENFDVSAKHAIAVEANTGKILYEKDADTTAGIASITK 60

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALITR 138
           M+T+Y++++ ++S  L  ++++ +S    +     + S + +  + Y T ++ + A +  
Sbjct: 61  MLTVYMVYKEIKSGDLTWSSKVKISDYPYSLTKDYSASNVPMDAREY-TVKELVEASMIA 119

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK------------- 185
           SAN  + A  E + G+E KF  +M  + ++ G+ +    NASGL++K             
Sbjct: 120 SANSAAIALAEKVGGTEPKFVDMMKKQLQEWGITDAKLVNASGLNNKTLGDHIYPDSSSE 179

Query: 186 -NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
              + +ARD AI+   L K FPQ  K        +    +  +N +L  M      +DG+
Sbjct: 180 DENMMSARDVAIVAHHLIKEFPQVLKITEKTNSDFSGNKMETYNYMLPNMPYAREGVDGL 239

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMG-----MPTSQERDQKALELITSFLEKK---T 292
           KTG T  +G   V + +     +++VV+            R Q    L+          T
Sbjct: 240 KTGTTELAGACFVATSKENGMRLISVVLNADKSDSDDDAARFQATNNLLNYVNNTYEPIT 299

Query: 293 LKHQ-QTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
           L H+ QT++   +     K++ +    K+ ++  +
Sbjct: 300 LIHKGQTYQGSKVKVIDGKRTTVPAVAKKNFTVIQ 334


>gi|329116466|ref|ZP_08245183.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parauberis
           NCFD 2020]
 gi|326906871|gb|EGE53785.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parauberis
           NCFD 2020]
          Length = 412

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 68/336 (20%), Positives = 140/336 (41%), Gaps = 33/336 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           +++ I ++  ++    I  + A ++  K   S+I  D+   ++   K  +   P AS TK
Sbjct: 1   MKKIIMILSLLVSTITITTTSAEDIELKTD-SAIAFDIESGKVLYEKNAKKILPVASATK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ ++  KL  ++ + +S            S + L  +  +T +Q + A++  
Sbjct: 60  VLTTYMVYKEIEQGKLEWSSPVTISDYPFQLTTNYTISNVPLDAR-KYTVKQLMKAMLVT 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-------------- 184
           +AN  + A  E I G+E  F   M  + +  G+ +    NA+GL +              
Sbjct: 119 NANSAAIALAEKIGGTEPIFVDKMKKQLEVWGINDAKLYNATGLPNSILGDNIYPKSKQS 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
                +A+D AI+   L   +P+  KY S+ K  +  + I ++N +L         I+G+
Sbjct: 179 AENKLSAKDLAIITHHLLTEYPEVLKYTSLPKATFDGQDIYSYNYMLEGYPYERVGINGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK-------ALELITSFLEKKT- 292
             G    SG   + S +     ++++V+G         +        L+ +    E+ T 
Sbjct: 239 FLGSPEKSGPTFIASSKINKMKVISIVIGAHQEDNDVTEPFKTTSLLLDYLYQNFERVTL 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           LK  Q  +  + +        +    K   +  KKI
Sbjct: 299 LKKNQVIKDKSFAIKDSPDQSVSISPKEDMTIIKKI 334


>gi|229090329|ref|ZP_04221573.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
 gi|228693023|gb|EEL46740.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
          Length = 406

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 127/306 (41%), Gaps = 28/306 (9%)

Query: 42  ISMASELHAKPKYS-------SIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYL 93
           I +  E  A PK         +  ID     +   K    R +PAS+TK++T  ++ E+ 
Sbjct: 9   IGVNPEQVAPPKEGPNVFSQFATTIDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHT 68

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLK--EKTYFTTEQGILALITRSANDVSTAFGEFI 151
           +        Q   S+ A  Q  S   ++            ++ L+  SANDVS A  E I
Sbjct: 69  KP-----EDQFTFSQLALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAERI 123

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            GS + FA +M+ +AK++G  ++ +   +GLHD N  TT  D A++   ++K +P+  + 
Sbjct: 124 GGSVENFANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQA 182

Query: 212 FSIRKFRYRNRIIT----NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
            + ++        T    N +          G KTG+T  +   +V       + I+ VV
Sbjct: 183 MNTKRTTVTTSRQTVSIFNKSTYFEN-PYSIGGKTGFTNEARNTLVLLNEKDGNRIINVV 241

Query: 268 MGMPTSQ--ERDQKALELITSFLEKKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKR 320
           M     +  E  ++  +       K+T+      HQ+T   +    + L+KS  +   K 
Sbjct: 242 MASQRPEIYEDLKQMADYSFGQFVKQTVLDKHSWHQKTTYLNKDIDSELEKSAELMLKKD 301

Query: 321 TYSQFK 326
                K
Sbjct: 302 EGKNVK 307


>gi|15610466|ref|NP_217847.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis H37Rv]
 gi|15842925|ref|NP_337962.1| penicillin-binding protein, putative [Mycobacterium tuberculosis
           CDC1551]
 gi|31794515|ref|NP_857008.1| penicillin-binding protein DacB1 [Mycobacterium bovis AF2122/97]
 gi|121639258|ref|YP_979482.1| putative penicillin-binding protein dacB1 [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148663194|ref|YP_001284717.1| putative penicillin-binding protein DacB1 [Mycobacterium
           tuberculosis H37Ra]
 gi|148824535|ref|YP_001289289.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis F11]
 gi|167967097|ref|ZP_02549374.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis H37Ra]
 gi|215405348|ref|ZP_03417529.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           02_1987]
 gi|215428820|ref|ZP_03426739.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T92]
 gi|215432297|ref|ZP_03430216.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           EAS054]
 gi|218755116|ref|ZP_03533912.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis GM
           1503]
 gi|219559395|ref|ZP_03538471.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T17]
 gi|224991755|ref|YP_002646444.1| putative penicillin-binding protein [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253800375|ref|YP_003033376.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis KZN
           1435]
 gi|254233942|ref|ZP_04927267.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis C]
 gi|254365954|ref|ZP_04981999.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254552436|ref|ZP_05142883.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260188381|ref|ZP_05765855.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260202603|ref|ZP_05770094.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T46]
 gi|260206688|ref|ZP_05774179.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis K85]
 gi|289445020|ref|ZP_06434764.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T46]
 gi|289449022|ref|ZP_06438766.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           CPHL_A]
 gi|289555609|ref|ZP_06444819.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis KZN
           605]
 gi|289571561|ref|ZP_06451788.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T17]
 gi|289576056|ref|ZP_06456283.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis K85]
 gi|289747151|ref|ZP_06506529.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis
           02_1987]
 gi|289752030|ref|ZP_06511408.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T92]
 gi|289755456|ref|ZP_06514834.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis
           EAS054]
 gi|289763521|ref|ZP_06522899.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis GM
           1503]
 gi|294995903|ref|ZP_06801594.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis 210]
 gi|297635986|ref|ZP_06953766.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis KZN
           4207]
 gi|297732983|ref|ZP_06962101.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis KZN
           R506]
 gi|313660315|ref|ZP_07817195.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium tuberculosis KZN
           V2475]
 gi|2894240|emb|CAA17102.1| PROBABLE PENICILLIN-BINDING PROTEIN DACB1 (D-ALANYL-D-ALANINE
           CARBOXYPEPTIDASE) (DD-PEPTIDASE) (DD-CARBOXYPEPTIDASE)
           (PBP) (DD-TRANSPEPTIDASE) (SERINE-TYPE D-ALA-D-ALA
           CARBOXYPEPTIDASE) (D-AMINO ACID HYDROLASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|13883259|gb|AAK47776.1| penicillin-binding protein, putative [Mycobacterium tuberculosis
           CDC1551]
 gi|31620111|emb|CAD95475.1| PROBABLE PENICILLIN-BINDING PROTEIN DACB1 (D-ALANYL-D-ALANINE
           CARBOXYPEPTIDASE) (DD-PEPTIDASE) (DD-CARBOXYPEPTIDASE)
           (PBP) (DD-TRANSPEPTIDASE) (SERINE-TYPE D-ALA-D-ALA
           CARBOXYPEPTIDASE) [Mycobacterium bovis AF2122/97]
 gi|121494906|emb|CAL73389.1| Probable penicillin-binding protein dacB1 [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124599471|gb|EAY58575.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis C]
 gi|134151467|gb|EBA43512.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148507346|gb|ABQ75155.1| putative penicillin-binding protein DacB1 [Mycobacterium
           tuberculosis H37Ra]
 gi|148723062|gb|ABR07687.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis F11]
 gi|224774870|dbj|BAH27676.1| putative penicillin-binding protein [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253321878|gb|ACT26481.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis KZN
           1435]
 gi|289417939|gb|EFD15179.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T46]
 gi|289421980|gb|EFD19181.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           CPHL_A]
 gi|289440241|gb|EFD22734.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis KZN
           605]
 gi|289540487|gb|EFD45065.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis K85]
 gi|289545315|gb|EFD48963.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T17]
 gi|289687679|gb|EFD55167.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis
           02_1987]
 gi|289692617|gb|EFD60046.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T92]
 gi|289696043|gb|EFD63472.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis
           EAS054]
 gi|289711027|gb|EFD75043.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis GM
           1503]
 gi|323718003|gb|EGB27186.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           CDC1551A]
 gi|326905171|gb|EGE52104.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis W-148]
 gi|328460108|gb|AEB05531.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis KZN
           4207]
          Length = 405

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 97/260 (37%), Gaps = 15/260 (5%)

Query: 39  IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKK 97
           I     A         + +V D++   +   +    R+ PAS+ K+    +    + +  
Sbjct: 80  ITAPGSAPAPGDVSAEAWLVADLDSGAVIAARDPHGRHRPASVIKV---LVAMASINT-- 134

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           L LN  +  +   A    +K+ +     +T  Q +  L+  S ND + A    + G    
Sbjct: 135 LTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAA 194

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
               ++  A K+G ++T     SGL      T+A D  +      +N P +    + R F
Sbjct: 195 -LEKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQN-PVFADIVATRTF 252

Query: 218 RY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM-GM 270
            +          + N N+LL       G KTGYT ++G   V +       ++ V++ G 
Sbjct: 253 DFPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGT 312

Query: 271 PTSQERDQKALELITSFLEK 290
                  ++A  L+      
Sbjct: 313 RQPIPPWEQAAHLLDYGFNT 332


>gi|229084363|ref|ZP_04216643.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44]
 gi|228698903|gb|EEL51608.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44]
          Length = 416

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 124/289 (42%), Gaps = 25/289 (8%)

Query: 56  SIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++ ID     +   K      +PAS+TK++T  ++ E+++        Q   S+ A  Q 
Sbjct: 41  AVSIDAKTGDVLYDKNANQHAFPASMTKVLTAILLMEHVKPG-----EQFTFSQPALDQE 95

Query: 115 PSKLYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
            S   ++            +  L+  SANDVS A GE I GS + FA +M+ KAK++G +
Sbjct: 96  KSNYQIEFQVGETIDRNTALTILMVLSANDVSYAVGERIGGSIENFAKMMNEKAKQLGAK 155

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NH- 227
           ++ +   +GLHD N  TTA D A++   ++K +P+  +  + ++        T    N  
Sbjct: 156 DSHFITPNGLHDPNHYTTAYDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKA 214

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL---- 283
           N   N      G KTG+T  +   +V       + I+ VVM     +   +   ++    
Sbjct: 215 NYFENPYS--IGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEI-YEDMRQIADHS 271

Query: 284 ITSFLEKKTLKHQQTHRK----DNLSSTSLKKSLMIKKLKRTYSQFKKI 328
            + F ++  L     H+K    D      L+KS  +   K      K +
Sbjct: 272 FSQFTKQMVLDKNNWHQKASYLDKNIDCELEKSAELMLKKDEGKNVKTV 320


>gi|326938999|gb|AEA14895.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 428

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 71/284 (25%), Positives = 122/284 (42%), Gaps = 21/284 (7%)

Query: 59  IDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K      YPAS TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 55  IDAKTGDVMYDKNAYHRAYPASTTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 109

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ KAK++G +++ 
Sbjct: 110 YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSH 169

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  + ++        T    N +   
Sbjct: 170 FVTPNGLHDPNHYTTPYDMAMITKGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSNFF 228

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I++VVM     +  E  ++  +       
Sbjct: 229 EN-PYSIGGKTGFTNEARNTLVLLNEKDGNRIISVVMASQRPEIYEDLKQMADYSFGQFT 287

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           K+T+      HQ+T   +   S+ L+KS  +   K      K I
Sbjct: 288 KQTVLDKHNWHQKTTYLNKDVSSELEKSAELMLKKDEGKNVKTI 331


>gi|229550853|ref|ZP_04439578.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus rhamnosus
           LMS2-1]
 gi|258538436|ref|YP_003172935.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus Lc
           705]
 gi|229315803|gb|EEN81776.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus rhamnosus
           LMS2-1]
 gi|257150112|emb|CAR89084.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus Lc
           705]
          Length = 436

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 56/270 (20%), Positives = 117/270 (43%), Gaps = 32/270 (11%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             +++ I+    ++   K      P AS+TKM+++ ++ + ++S K+  + ++ + ++  
Sbjct: 40  AKAAVAIEPTTGKVLYAKNASTVLPIASMTKMISIELVLDAIKSGKIKWDDKVTLDQSIW 99

Query: 112 T----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
           T    ++ S + L+    ++  +   A +  SAN       + ++GS++KF   M  K K
Sbjct: 100 TISQDRDLSNVPLRRDGSYSVRELYDASLIYSANAAMMLLAKAVAGSQEKFVNQMDAKLK 159

Query: 168 KIGMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFS 213
             G+ +    N +GL               +     +A+D A +   L K+ P+  K  S
Sbjct: 160 SWGITDAKIVNVTGLNNSQLKDAKVPGTGDNAENEMSAKDMAQVAQHLIKDHPEVLKTTS 219

Query: 214 IRKFRYRNRI-----ITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           I K  +R        + N + +L      +K   +DG+KTG +  +G     ++      
Sbjct: 220 IAKQTFRKGTDDAINMENWDWMLKGLVSYDKNLPVDGLKTGTSDAAGDCFTGTVEKNGMR 279

Query: 263 IVAVVMGMPTSQE--RDQKALELITSFLEK 290
           I+ VV+      +  R  +  +L+T  LE 
Sbjct: 280 IITVVLHANGDAKTRRFDETKKLMTHVLEN 309


>gi|292487716|ref|YP_003530589.1| penicillin-binding protein 7 [Erwinia amylovora CFBP1430]
 gi|292898950|ref|YP_003538319.1| penicillin-binding protein 7 [Erwinia amylovora ATCC 49946]
 gi|291198798|emb|CBJ45907.1| penicillin-binding protein 7 [Erwinia amylovora ATCC 49946]
 gi|291553136|emb|CBA20181.1| penicillin-binding protein 7 [Erwinia amylovora CFBP1430]
          Length = 316

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 67/284 (23%), Positives = 122/284 (42%), Gaps = 30/284 (10%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYS-----------SIVIDVNKNQMTG-FKQDE 73
           R   L   +LF    +++ A+    +P+ S           ++++D+N N++      D 
Sbjct: 6   RLFLLSLAMLFSIPFLMNQAAARAHQPEVSGAVQPDIASGSAMIVDLNSNKVIYQSHPDR 65

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNT--QIPVSKTAATQNP-SKLYLKEKTYFTTEQ 130
            R  AS+TK+MT+ +  +      L L+   ++ +S T   +   S++ L   +  +   
Sbjct: 66  VRPIASITKLMTVMVTLDAH----LPLDEMLKVDISHTPQMRGIYSRVRL--NSELSRRN 119

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +L  +  S N  + +      G    F   M+ KA+ +GM +T Y   +GL  +N ++T
Sbjct: 120 MMLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKARALGMSHTRYVEPTGLAIEN-VST 178

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT--NHNKLLNK-MHNIDGIKTG 243
           ARD + L +  R+ +P   +  + R+    FR  N I+   N N L+ +   NI   KTG
Sbjct: 179 ARDLSKLLLATRR-YPLIGQLSTTREDMASFRRPNYILPFRNTNHLVYRPDWNIQLTKTG 237

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           +T  +G  +V        P+  VV+           A  L    
Sbjct: 238 FTNEAGHCLVMRTVINQRPVSLVVLDAFGKYTHFADASRLRQWM 281


>gi|255281347|ref|ZP_05345902.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
           DSM 14469]
 gi|255268304|gb|EET61509.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
           DSM 14469]
          Length = 398

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 59/234 (25%), Positives = 96/234 (41%), Gaps = 18/234 (7%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP--VSKTAAT 112
           ++++D    +M   K      YPASLTK+MT  ++ EY     L     IP  +      
Sbjct: 152 AVLLDAGTGEMLAEKNGSAQMYPASLTKIMTALLLVEYC--GNLDGTAWIPTDIYDQLYA 209

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           +  S          T    +  ++  S  +       +I+GSE+ F  +M+ +A ++GM 
Sbjct: 210 EGASVAGFLPGEEVTLRDLLYGILLPSGAECCLTAARYIAGSEESFVQIMNQRAAELGMT 269

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKN------FPQYYKYFSIRKFRYRNRIITN 226
           NT + N++GL D    ++A D A L     +N      F   Y Y    +         +
Sbjct: 270 NTHFTNSTGLQDAQHYSSAEDIAALLQYALQNASFREAFTSEYYYVQPTQEHPEGFTFWS 329

Query: 227 HNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
              L ++        I G KTGYT+ +G  + + LR      + V  G P S E
Sbjct: 330 T--LFSQAQASGDDRILGGKTGYTQEAGLCLASLLRVGGREYILVTAGAPGSHE 381


>gi|238757296|ref|ZP_04618483.1| D-alanyl-D-alanine endopeptidase [Yersinia aldovae ATCC 35236]
 gi|238704674|gb|EEP97204.1| D-alanyl-D-alanine endopeptidase [Yersinia aldovae ATCC 35236]
          Length = 311

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 111/269 (41%), Gaps = 24/269 (8%)

Query: 37  LSIIMISMASELHAKPKY---------SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           +S++ ++ AS   A  K          S++V+D+  N++      DE    AS+TK+MT 
Sbjct: 19  ISVVPLATASGGTAVAKGKAPLELASGSAMVVDLQTNKVIYANNIDEVVPIASITKLMTA 78

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVST 145
            ++ +     KL L+  I V      +       ++  +  + +  +L  +  S N  + 
Sbjct: 79  MVVLDA----KLPLDEVISVDIHQTKELKGVFSRVRVNSEISRKDMLLLALMSSENRAAA 134

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           +      G    F   M+ KAK +GM +T Y   +GL   N ++TARD   + ++  K +
Sbjct: 135 SLAHHYPGGYNAFIKAMNAKAKSLGMTHTRYVEPTGLSI-NNVSTARDLTKM-LMASKQY 192

Query: 206 PQYYKYFSIRK----FRYRNRIIT--NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRY 258
           P   +  +  +    FR  N  +   N N L+     NI   KTG+T  +G  +      
Sbjct: 193 PLIGQLSTTTEKMATFREPNYTLPFRNTNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVI 252

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSF 287
            + P+  VV+           A  L +  
Sbjct: 253 GNRPVALVVLDAFGKYTHFADANRLRSWM 281


>gi|126434530|ref|YP_001070221.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. JLS]
 gi|126234330|gb|ABN97730.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. JLS]
          Length = 291

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 56/255 (21%), Positives = 103/255 (40%), Gaps = 23/255 (9%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
            + A P  + IV D++  Q+   + D  RY PAS  K +   ++ + +      L+T I 
Sbjct: 36  PIPAGPAEAWIVADMDTGQVLAGRNDTTRYAPASTIKTLLAQVVLDEV-----PLDTTIA 90

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
             +       +   +     +T  Q + AL+  S ND +      + G +      M+ K
Sbjct: 91  AEEADTRVECNCAGVAPGHVYTARQLLEALLLVSGNDAANTLARMLGGMDSA-VAKMNAK 149

Query: 166 AKKIGMQNTIYKNASGLHDKNQ--ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR- 222
           A ++G   T     SGL        +TA D A++      N P + +  ++    +  + 
Sbjct: 150 AAQLGAHGTNVVTPSGLDGPGMPFWSTAHDLAVIFRAAMAN-PVFVQITAMPSTVFPTKA 208

Query: 223 ---IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM------GMPTS 273
              ++ N N+LL++     G KTG+T  +    V + +     +V V+M      G PT 
Sbjct: 209 GEAVLVNQNELLHRYPGAIGGKTGFTDIARKTFVGAAQRDGRRLVVVLMHGLVKEGGPTY 268

Query: 274 QERDQKALELITSFL 288
            +   +A  L+    
Sbjct: 269 WD---QAAGLLDWGF 280


>gi|297621737|ref|YP_003709874.1| putative D-alanyl-D-alanine carboxypeptidase [Waddlia chondrophila
           WSU 86-1044]
 gi|297377038|gb|ADI38868.1| putative D-alanyl-D-alanine carboxypeptidase [Waddlia chondrophila
           WSU 86-1044]
          Length = 426

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 60/313 (19%), Positives = 124/313 (39%), Gaps = 36/313 (11%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTL 86
             L+  +L  + I+  +  ++HA    S+I+++ +   +   K  +   +PASLTK+ T 
Sbjct: 5   FCLIFALLLANSILNGIEIKIHAD---SAILMNADTGAILYEKNGKKEHFPASLTKIATA 61

Query: 87  YIIFEYLQSKKLHLNTQIP--------VSK------------TAATQNPSKLYLKEKTYF 126
               +  +     L+  +         VS+               T+  S + +K+    
Sbjct: 62  IYTLQLREQ---KLDKMLTAEHEAIASVSEEEMVRSNYSLPAYWLTRGTSHIGIKKGEEL 118

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           +    +  ++  S  D S     ++ G+   F   ++   K++G  +T   N  GLH   
Sbjct: 119 SLRDLLYGMMVASGGDASNMIALYMGGTIPVFMEELNLYLKELGCTSTYLMNPHGLHHPR 178

Query: 187 QITTARDQAILGILLRKN--FPQYYKYFSIRKFRYRNR---IITNHNKLLNK----MHNI 237
            ++TA D A+L     KN  F +  K    ++     +    +   N+LL K        
Sbjct: 179 HVSTAYDMAVLTREALKNSTFREIVKTVRCQRPETNKQKATTLIQTNRLLRKGKYYYSKA 238

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQ 297
            G+KTGYT  +  N+V + +  D  ++AV M     ++    A +L     +++ +  + 
Sbjct: 239 IGVKTGYTSQAKNNLVAAAKDGDRTLIAVFMHCDDREKMFLDAKQLFNKAFKEEKISRKV 298

Query: 298 THRKDNLSSTSLK 310
                   +  ++
Sbjct: 299 FQAGPQKMTLRVE 311


>gi|215447643|ref|ZP_03434395.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T85]
 gi|289759480|ref|ZP_06518858.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T85]
 gi|289715044|gb|EFD79056.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T85]
          Length = 405

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 97/260 (37%), Gaps = 15/260 (5%)

Query: 39  IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKK 97
           I     A         + +V D++   +   +    R+ PAS+ K+    +    + +  
Sbjct: 80  ITAPGSAPAPGDVSAEAWLVADLDSGAVIAARDPHGRHRPASVIKV---LVAMASINT-- 134

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           L LN  +  +   A    +K+ +     +T  Q +  L+  S ND + A    + G    
Sbjct: 135 LTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAA 194

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
               ++  A K+G ++T     SGL      T+A D  +      +N P +    + R F
Sbjct: 195 -LEKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQN-PVFADIVATRTF 252

Query: 218 RY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM-GM 270
            +          + N N+LL       G KTGYT ++G   V +       ++ V++ G 
Sbjct: 253 DFPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGT 312

Query: 271 PTSQERDQKALELITSFLEK 290
                  ++A  L+      
Sbjct: 313 RQPIPPWEQAAHLLDYGFNT 332


>gi|312862585|ref|ZP_07722826.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           vestibularis F0396]
 gi|311101845|gb|EFQ60047.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           vestibularis F0396]
          Length = 423

 Score =  188 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 139/345 (40%), Gaps = 37/345 (10%)

Query: 24  IQRNIQLM-GKILFLSIIMISMASEL---HAKPKYSSIVIDVNKNQMTGFKQDEPRY-PA 78
           +++ I LM   +L L  +  + A++    +      +I ++ N  ++   K         
Sbjct: 6   MKKLITLMMTFLLCLGSVAPAFAADKKKGYDAAAKHAIAVEANTGKILYEKDATTSTGIG 65

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILA 134
           S+ K++T Y++++ +    L  N+++ +S        +   S + L  +  +T +Q + A
Sbjct: 66  SIIKLLTAYMVYKAVDQGDLKWNSKVDISDYPFELTVSAGVSNIPLDAR-KYTVKQLLDA 124

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------- 183
            +  SAN  S A  E I G+E KF  +M  + K  G+ +    NASGL+           
Sbjct: 125 TLIASANSASIALAEEIGGTESKFVDMMKAQLKDWGITDAKIVNASGLNNSYLGDNIYPG 184

Query: 184 ---DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-RIITNHNKLLNKMH---- 235
              D+    +A+D A++   + K +P+        +  +     +   N +L        
Sbjct: 185 SKSDEENTMSAKDVAVIAQHVVKEYPEILDITKKTEADFDGVNKLKTSNYMLKGQPSYRK 244

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ----ERDQKALELIT---SFL 288
            +DG+KTG T  +G + V         I+ V++    +      R     +L+       
Sbjct: 245 GVDGLKTGTTDLAGASFVAHSNESGMSIITVILNSDNTDTDDYARFTATNDLLNYVVYHW 304

Query: 289 EKKTL-KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
           E KT+ K  Q   K   S    K   +    K  ++  +KIDA  
Sbjct: 305 ESKTIAKKGQAIGKSQASVLDGKSKQVTAVAKSDFNIIQKIDANN 349


>gi|228964330|ref|ZP_04125449.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795427|gb|EEM42915.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 407

 Score =  188 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 70/284 (24%), Positives = 121/284 (42%), Gaps = 21/284 (7%)

Query: 59  IDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K      YPAS TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 34  IDAKTGDVLYDKNAYHRAYPASTTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 88

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ KAK++G +++ 
Sbjct: 89  YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGARDSH 148

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL 231
           +   +GLHD N  TT  D A++   + +N+P+  +  + ++        T    N +   
Sbjct: 149 FVTPNGLHDPNHYTTPYDMAMITKGV-QNYPEILQAMNTKRTTVTTSRQTVSIFNKSNFF 207

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I+ VVM     +  E  ++  +       
Sbjct: 208 EN-PYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMADYSFGQFV 266

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           K+T+      HQ+T   +   ++ L+KS  +   K      K I
Sbjct: 267 KQTVLDKHSWHQKTTYLNKDINSELEKSAELMLKKDEGKNVKTI 310


>gi|42780462|ref|NP_977709.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           ATCC 10987]
 gi|42736381|gb|AAS40317.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           ATCC 10987]
          Length = 428

 Score =  188 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 136/337 (40%), Gaps = 37/337 (10%)

Query: 22  IYIQRNIQLMGKILFLSIIMISM---------ASELHAKPKYS-------SIVIDVNKNQ 65
           +  ++ +  +  I    +  +++           ++   PK         +  ID     
Sbjct: 2   VNFKKILAFITVICLFFLTPMTLRAETNVGVNPEQVAPPPKEGPNVFSQFATTIDAKTGD 61

Query: 66  MTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK--E 122
           +   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S   ++   
Sbjct: 62  ILYDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSNYQIEFQP 116

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
                    ++ L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GL
Sbjct: 117 GETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGL 176

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLNKMHNID 238
           HD N  TT  D A++   ++K +P+  +  + ++        T    N +          
Sbjct: 177 HDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYFEN-PFSI 234

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLEKKTL--- 293
           G KTG+T  +   +V       + I+ VVM     +  E  ++  +       K+T+   
Sbjct: 235 GGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMADYSFGQFVKQTVLDK 294

Query: 294 --KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
              HQ+T   +    + L+KS  +   K      + I
Sbjct: 295 HSWHQKTTYLNKDIDSELEKSAEVMLKKDEGKNVRTI 331


>gi|28210687|ref|NP_781631.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88]
 gi|28203125|gb|AAO35568.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88]
          Length = 419

 Score =  188 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 123/298 (41%), Gaps = 27/298 (9%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFK-QDEPRYPASLTKMM 84
            L+   +  S      A+  + +P     S+I +D++  ++   K  D+  YPAS TK++
Sbjct: 8   SLLATFMIFSSTSGVYAANTNTQPNIYGKSAITLDMDTGEIIYAKSPDDKMYPASTTKLI 67

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-----LKEKTYFTTEQGILALITRS 139
           T  ++ E         +  +  +K A  Q    L      +           +  L+  S
Sbjct: 68  TSLLLAENKNK-----DDDLTYTKDAKDQPEYSLNKNLHAISVGETMKASDAMDGLLLYS 122

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            NDV+   G+ I G+ + FA LM+ KAK + ++N+ + N +GLH K+  TT+ D +ILG 
Sbjct: 123 GNDVAYLIGDNIGGNREGFAKLMNEKAKSLNLKNSNFVNPNGLHHKDHYTTSYDLSILGR 182

Query: 200 LLRKN----FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
              KN         K  S+   +    +I N NKL+       G KTGYT  +G  +V  
Sbjct: 183 AAYKNPWVSETMAKKNSSVSTSKGTTFLIENRNKLVGS-KGCVGGKTGYTSAAGRCLVAI 241

Query: 256 LRYKDDPIVAVVMGM---PTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLK 310
                  I+ VV+                ++I       + K ++T   +  S    K
Sbjct: 242 FDRDGRKILGVVLNSVYDANDSFVFNDMEKIIDW-----SYKAEKTILHNKDSVVGTK 294


>gi|62184714|ref|YP_219499.1| putative D-alanyl-d-alanine carboxypeptidase [Chlamydophila abortus
           S26/3]
 gi|62147781|emb|CAH63526.1| putative D-alanyl-d-alanine carboxypeptidase [Chlamydophila abortus
           S26/3]
          Length = 433

 Score =  188 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 60/308 (19%), Positives = 112/308 (36%), Gaps = 41/308 (13%)

Query: 35  LFLSIIMISMASELHAKPKYSSIV-----------IDVNKNQMTGFKQ-DEPRYPASLTK 82
           +F +  ++   + L   P +  IV           +     ++   K  D+  YPAS+TK
Sbjct: 4   VFFTFALLPFLAGLFTHPVHGQIVFPETRGNAVAVVHTETGKVLYAKDLDKRIYPASMTK 63

Query: 83  MMTLYIIFEYLQSKK-----LHLNTQIPVSKTAATQ------------NPSKLYLKEKTY 125
           + T   I +           +  +    ++  A  Q            +   + L+ K  
Sbjct: 64  IATALFILKKHPDVLNRFIIVKPDAIASITPQAKKQSGYRSPPHWLETDGVTIQLQNKEE 123

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +      AL+  SAND + A     SGS  +F   ++   +++G  +T + N  GLH  
Sbjct: 124 VSGWDLFHALLICSANDAANALAIACSGSVAEFMKQLNQFLRELGCDHTHFNNPHGLHHP 183

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLL-----NKM 234
           +  TTA D   +     K  P + +      +          RI+   NKL+        
Sbjct: 184 DHYTTAGDLIRIMREGLKE-PLFRQVIRTTNYTMAPTNLSEERILHLTNKLILPGSTYYY 242

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
               G KTG T+++G N+V + +     I+ +  G     E  +  + L      ++ L+
Sbjct: 243 PPALGGKTGTTKDAGRNLVFAAKKHGRSIITIAAGYSAMSELYEDVIALCEGVFNEQPLR 302

Query: 295 HQQTHRKD 302
                  +
Sbjct: 303 RYLIPPTE 310


>gi|218896308|ref|YP_002444719.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           G9842]
 gi|218541762|gb|ACK94156.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           G9842]
          Length = 428

 Score =  188 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 70/284 (24%), Positives = 121/284 (42%), Gaps = 21/284 (7%)

Query: 59  IDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K      YPAS TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 55  IDAKTGDVLYDKNAYHRAYPASTTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 109

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ KAK++G +++ 
Sbjct: 110 YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGARDSH 169

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL 231
           +   +GLHD N  TT  D A++   + +N+P+  +  + ++        T    N +   
Sbjct: 170 FVTPNGLHDPNHYTTPYDMAMITKGV-QNYPEILQAMNTKRTTVTTSRQTVSIFNKSNFF 228

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I+ VVM     +  E  ++  +       
Sbjct: 229 EN-PYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMADYSFGQFV 287

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           K+T+      HQ+T   +   ++ L+KS  +   K      K I
Sbjct: 288 KQTVLDKHSWHQKTTYLNKDINSELEKSAELMLKKDEGKNVKTI 331


>gi|331673660|ref|ZP_08374423.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli TA280]
 gi|331068933|gb|EGI40325.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli TA280]
          Length = 324

 Score =  188 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 108/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAA 111
           S++++D+N N++      +  R  AS++K+MT  ++ +     +L L+ +  + +S+T  
Sbjct: 45  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDA----RLPLDEKLKVDISQTP- 99

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +      G  K F   M+ KAK +GM
Sbjct: 100 EMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGM 159

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIIT---- 225
            NT +   +GL   N ++TARD   L ++  K +P   +  + R+    + N   T    
Sbjct: 160 NNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFR 217

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L 
Sbjct: 218 NTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLR 277

Query: 285 TS 286
           T 
Sbjct: 278 TW 279


>gi|108798930|ref|YP_639127.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. MCS]
 gi|119868045|ref|YP_937997.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. KMS]
 gi|108769349|gb|ABG08071.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. MCS]
 gi|119694134|gb|ABL91207.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. KMS]
          Length = 291

 Score =  188 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 56/255 (21%), Positives = 103/255 (40%), Gaps = 23/255 (9%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
            + A P  + IV D++  Q+   + D  RY PAS  K +   ++ + +      L+T I 
Sbjct: 36  PIPAGPAEAWIVADMDTGQVLAGRNDTTRYAPASTIKTLLAQVVLDEV-----PLDTTIA 90

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
             +       +   +     +T  Q + AL+  S ND +      + G +      M+ K
Sbjct: 91  AEEADTRVECNCAGVAPGHVYTARQLLEALLLVSGNDAANTLARMLGGMDSA-VAKMNAK 149

Query: 166 AKKIGMQNTIYKNASGLHDKNQ--ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR- 222
           A ++G   T     SGL        +TA D A++      N P + +  ++    +  + 
Sbjct: 150 AAQLGAHGTNVVTPSGLDGPGMPFWSTAHDLAVIFRAAMAN-PVFAQITAMPSTVFPTKA 208

Query: 223 ---IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM------GMPTS 273
              ++ N N+LL++     G KTG+T  +    V + +     +V V+M      G PT 
Sbjct: 209 GEAVLVNQNELLHRYPGAIGGKTGFTDIARKTFVGAAQRDGRRLVVVLMHGLVKEGGPTY 268

Query: 274 QERDQKALELITSFL 288
            +   +A  L+    
Sbjct: 269 WD---QAAGLLDWGF 280


>gi|332313242|gb|EGJ26337.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str.
           Scott A]
          Length = 244

 Score =  188 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 117/243 (48%), Gaps = 7/243 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++ V  V   +    +  +   P ASLTK+MT +++ E + + +L  + ++ + +   
Sbjct: 3   ANAAAVYSVENGEPLYEENADKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLDLVRLDD 62

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S   + +K  ++      A++T SAND +   G+ + G    F   M+N+AKK+GM
Sbjct: 63  PSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLGDRLDG--ANFPKEMNNQAKKLGM 120

Query: 172 QN-TIYKNASGLHDKNQ--ITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNH 227
            + T + +ASGL    +  ++T +D  +L   L    P+  +  S       +   + + 
Sbjct: 121 SSKTTFVSASGLDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKSSVTTDKGAKLEST 180

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           N  L  +  +DG+KTG+T  +G+  + +       ++++V+   T+++R +   +L+   
Sbjct: 181 NDSLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVG 240

Query: 288 LEK 290
            ++
Sbjct: 241 FKE 243


>gi|228938491|ref|ZP_04101100.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228971370|ref|ZP_04131997.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977982|ref|ZP_04138362.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
 gi|228781770|gb|EEM29968.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
 gi|228788406|gb|EEM36358.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821228|gb|EEM67244.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 407

 Score =  188 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 71/284 (25%), Positives = 122/284 (42%), Gaps = 21/284 (7%)

Query: 59  IDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K      YPAS TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 34  IDAKTGDVMYDKNAYHRAYPASTTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 88

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ KAK++G +++ 
Sbjct: 89  YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSH 148

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  + ++        T    N +   
Sbjct: 149 FVTPNGLHDPNHYTTPYDMAMITKGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSNFF 207

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I++VVM     +  E  ++  +       
Sbjct: 208 EN-PYSIGGKTGFTNEARNTLVLLNEKDGNRIISVVMASQRPEIYEDLKQMADYSFGQFT 266

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           K+T+      HQ+T   +   S+ L+KS  +   K      K I
Sbjct: 267 KQTVLDKHNWHQKTTYLNKDVSSELEKSAELMLKKDEGKNVKTI 310


>gi|116334615|ref|YP_796142.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367]
 gi|116099962|gb|ABJ65111.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367]
          Length = 439

 Score =  188 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 75/324 (23%), Positives = 133/324 (41%), Gaps = 41/324 (12%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT-- 109
             + I +D    Q+   K  D+    AS+TK++++Y++ + +   KL  + +I V+K   
Sbjct: 45  AKAGIAVDAKTGQILYDKNSDQSLPVASMTKLLSVYLVLDAIHDGKLKWDQKITVNKATA 104

Query: 110 --AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
             A   N S + L+    +T +    A +  SAN    A G  ++GS   F   M  +AK
Sbjct: 105 KVAQNTNLSNVPLRAGHSYTVKSLYQASLIYSANGAIEALGTAVAGSPHAFVTKMRAEAK 164

Query: 168 KIGMQNTIYKNASGLHDK--------------NQITTARDQAILGILLRKNFPQYYKYFS 213
            +GM N    NA GL +K                  +A DQA L + L   +P+  K  S
Sbjct: 165 TLGMTNAKIYNACGLTNKQVGKLGYSNVKGSTENEWSAADQAKLAVALVNKYPEVLKTTS 224

Query: 214 IRKFRYRNRI-----ITNHNKLLNKMH------NIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           I+K  +         + N N +L  +       ++DG+KTG +  +G N   +     + 
Sbjct: 225 IKKMWFEKGTSDATKMENWNWMLKGLSASYSKLHVDGLKTGTSDAAGANFTGTANNNGNR 284

Query: 263 IVAVVMGM----PTSQERDQKALELIT---SFLEKKTLKHQQTHRKDNLSSTSLKKSLMI 315
           I+ VV+       T   R ++  ++++   +  +  T K            T   K L  
Sbjct: 285 IITVVLHAAHKSDTDPARFKQTQKMMSYVYNNFKTVTYKAGSQITGSKTVKTHDAKQLTA 344

Query: 316 KKLK----RTYSQFKKIDAKAHST 335
           K       + + +  ++ +  HST
Sbjct: 345 KTALASGIKLWIRDDQVASNVHST 368


>gi|94264946|ref|ZP_01288718.1| Serine-type D-Ala-D-Ala carboxypeptidase [delta proteobacterium
           MLMS-1]
 gi|94267812|ref|ZP_01290999.1| Serine-type D-Ala-D-Ala carboxypeptidase [delta proteobacterium
           MLMS-1]
 gi|93451851|gb|EAT02592.1| Serine-type D-Ala-D-Ala carboxypeptidase [delta proteobacterium
           MLMS-1]
 gi|93454602|gb|EAT04877.1| Serine-type D-Ala-D-Ala carboxypeptidase [delta proteobacterium
           MLMS-1]
          Length = 359

 Score =  188 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 68/260 (26%), Positives = 126/260 (48%), Gaps = 13/260 (5%)

Query: 32  GKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIF 90
           G  L    +  S+  ++ A+   +++VID    ++      D PR PAS  K++T  I  
Sbjct: 73  GNYLTGGAVAASLERQITAR---TAVVIDAASGRLIYSLNPDTPRQPASTIKVITALIAL 129

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           + L+         +P S+ AA    SK+YL++   +     + A++ RSAND + A  E 
Sbjct: 130 DSLREH-----AMVPTSRRAAQMPRSKVYLQQGRSYRAGDLVDAILMRSANDAAVALAEK 184

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           I+G+E+ FA LM++K + +G  NT  +NA+GL  + Q +TARD A++     +  P+  +
Sbjct: 185 IAGNERAFARLMTSKVRAMGANNTTLRNANGLTAQGQQSTARDLALILHRAME-HPELAQ 243

Query: 211 YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
                      + +   N+ L +++   G KTG+TR +    V   +  +  ++  +MG 
Sbjct: 244 RLGTVSTNGLGQTMRTSNRALWQINGSQGGKTGFTRAAQQTYVGKFQRGNHELIVALMGS 303

Query: 271 PTSQERDQKALELITSFLEK 290
            T  +      +L+    ++
Sbjct: 304 TTMWD---DVRQLVNYGFQQ 320


>gi|52144058|ref|YP_082770.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
 gi|196040650|ref|ZP_03107949.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           NVH0597-99]
 gi|51977527|gb|AAU19077.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
 gi|196028440|gb|EDX67048.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           NVH0597-99]
          Length = 428

 Score =  188 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 71/335 (21%), Positives = 135/335 (40%), Gaps = 37/335 (11%)

Query: 22  IYIQRNIQLMGKILFLSIIMISM---------ASELHAKPKYS-------SIVIDVNKNQ 65
           +  ++ +  +  I    +  +++           ++   PK         +  ID     
Sbjct: 2   VNFKKILAFITVICLFFLTPMTLRAETNIGVNPEQVAPPPKEGPNVFSQFATTIDAKTGD 61

Query: 66  MTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK--E 122
           +   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S   ++   
Sbjct: 62  ILYDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSNYQIEFQP 116

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
                    ++ L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GL
Sbjct: 117 GETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGL 176

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLNKMHNID 238
           HD N  TT  D A++   ++K +P+  +  + ++        T    N +          
Sbjct: 177 HDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYFEN-PYSI 234

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLEKKTL--- 293
           G KTG+T  +   +V       + I+ VVM     +  E  ++  +       K+T+   
Sbjct: 235 GGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMADYSFGQFVKQTVLDK 294

Query: 294 --KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
              HQ+T   +    + L+KS  +   K      K
Sbjct: 295 HSWHQKTTYLNKDIDSELEKSAELMLKKDEGKNVK 329


>gi|218559053|ref|YP_002391966.1| D-alanyl-D-alanine endopeptidase [Escherichia coli S88]
 gi|218365822|emb|CAR03562.1| D-alanyl-D-alanine endopeptidase [Escherichia coli S88]
 gi|307626324|gb|ADN70628.1| D-alanyl-D-alanine endopeptidase [Escherichia coli UM146]
          Length = 310

 Score =  188 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 121/278 (43%), Gaps = 26/278 (9%)

Query: 28  IQLMGKILFLSIIMIS------MASELHAKPKY---SSIVIDVNKNQMTGFKQDE-PRYP 77
           + L    L L++          +A+   ++P+    S++++D+N N++      +  R  
Sbjct: 6   VSLFSLALMLAVPFAPQAVAKTVAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPI 65

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           AS++K+MT  ++ +     +L L+ +  + +S+T          ++  +  + +  +L  
Sbjct: 66  ASISKLMTAMVVLDA----RLPLDEKLKVDISQTP-EMKGVYSRVRLNSEISRKDMLLLA 120

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S N  + +      G  K F   M+ KAK +GM NT +   +GL   N ++TARD  
Sbjct: 121 LMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHN-VSTARDLT 179

Query: 196 ILGILLRKNFPQYYKYFSIRK--FRYRNRIIT----NHNKLLNKM-HNIDGIKTGYTRNS 248
            L ++  K +P   +  + R+    + N   T    N N L+ +   NI   KTG+T  +
Sbjct: 180 KL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAA 238

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           G  +V      + P+  VVM           A  L T 
Sbjct: 239 GHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276


>gi|119953389|ref|YP_945598.1| D-alanyl-D-alanine carboxypeptidase [Borrelia turicatae 91E135]
 gi|119862160|gb|AAX17928.1| D-alanyl-D-alanine carboxypeptidase [Borrelia turicatae 91E135]
          Length = 312

 Score =  188 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 69/265 (26%), Positives = 112/265 (42%), Gaps = 27/265 (10%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S ++ID +   +   K       PASLTK++T+Y      + K + L T +P+S  A+
Sbjct: 35  AKSVVLIDYDTKCILYSKNPGLVFPPASLTKLVTIYTALVEARKKNIDLKTTVPISSAAS 94

Query: 112 TQN----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG-SEKKFAILMSNKA 166
             N     S ++L+E      E+ +  LI  S ND + A  EFI G +   F  LM+   
Sbjct: 95  YYNLPLDSSLMFLEEGHKVNFEELLKGLIISSGNDAAIAIAEFIVGKNLSDFVDLMNINV 154

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------ 220
             +G+ N  + + SG    +   TA + A+      + F       S++ F Y       
Sbjct: 155 LNLGLINMSFVDTSGYS-SDNKITALEMALFARTYIEEFEFILDIHSLKDFIYPRSENLG 213

Query: 221 --------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP- 271
                   N    N N L+      DG+KTGY + SG N+V + +  D  ++AVV+G+  
Sbjct: 214 NTSSLKMLNFKQKNKNVLIFNYPYADGLKTGYIKTSGLNLVATAKKDDIRLIAVVLGVNK 273

Query: 272 -----TSQERDQKALELITSFLEKK 291
                  ++R   A +L        
Sbjct: 274 GVDNVGERKRALIAQKLFEYGFGNY 298


>gi|89898744|ref|YP_515854.1| penicillin-binding protein 5 [Chlamydophila felis Fe/C-56]
 gi|89332116|dbj|BAE81709.1| penicillin-binding protein 5 [Chlamydophila felis Fe/C-56]
          Length = 433

 Score =  188 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 59/283 (20%), Positives = 108/283 (38%), Gaps = 36/283 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++ VI  +  ++   K  D+  YPAS+TK+ T   I +        LN  I V + A   
Sbjct: 35  AAAVIHADSGKILYAKDIDKKIYPASMTKIATALFILKKHPE---VLNRFITVKQDAIAS 91

Query: 114 --------------------NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                               +   + L+ K   +      AL+  SAND +       S 
Sbjct: 92  ITPQAKKQSGYRSPPHWLETDGVTIQLQNKEEVSGWDLFHALLICSANDAANTLATACSE 151

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S  +F   ++   +++G ++T + N  GLH  N  TTARD   +     K  P + +   
Sbjct: 152 SVAEFMKQLNTFLRELGCEHTHFNNPHGLHHPNHYTTARDLTRIMRECLKE-PLFRQVIR 210

Query: 214 IRKFRY------RNRIITNHNKLL-----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
              ++       + R++   NKL+            G KTG T+++G N++ + +     
Sbjct: 211 TTNYKMAPTNLSQERVLNLTNKLILPGSTYYYPPALGGKTGTTKDAGKNLIFAAKKHGRS 270

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLS 305
           I+ +  G P   E  +  + L      +  L+       +  +
Sbjct: 271 IITIAAGYPAMGELYEDVIALCEGVFNEPLLRRYLIPPTEKYT 313


>gi|319947350|ref|ZP_08021583.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus australis
           ATCC 700641]
 gi|319746592|gb|EFV98852.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus australis
           ATCC 700641]
          Length = 444

 Score =  188 bits (479), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 88/367 (23%), Positives = 154/367 (41%), Gaps = 65/367 (17%)

Query: 24  IQRNIQLMGKILF-----LSII---MISMASELHAKPKY-------SSIVIDVNKNQMTG 68
           +++ + ++G ++      LSI+   ++ MA +++            SS+VID N   +  
Sbjct: 1   MKKKLLVLGIVVLSLLRPLSIVADELVDMAQKMYPNDHVQAYNRPRSSLVIDANTGDVLW 60

Query: 69  FKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY------LK 121
               DE R PAS++K+MTLY++FE ++  K+  +T +    TAA Q+ SK+Y      + 
Sbjct: 61  KDNIDEVRDPASMSKLMTLYLLFESMKEGKITKDTVVT--ATAADQSMSKIYEISNNNIV 118

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNAS 180
               +T  + I      S+N  +      +S  +   F   M+ K+K++GM NTI+ N S
Sbjct: 119 AGVDYTVSELITMTAVPSSNVATIMLANLLSNHDADAFIQRMNEKSKELGMTNTIWNNPS 178

Query: 181 GLH---------------DKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYR 220
           G                 D    TTARD AIL     K +P+   Y      ++++    
Sbjct: 179 GAAISTFQGLYTSYNYPNDAANQTTARDLAILVYHFVKEYPEILSYTNQAKVTVKQGTPY 238

Query: 221 NRIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
                 +N  L      +  +DG+KTG +    FN + + +  +  I++VVMG+    ++
Sbjct: 239 EETFDTYNYSLPGARYALEGVDGLKTGSSPRGAFNYIATAKRGEQRIISVVMGVGDWSDQ 298

Query: 277 DQK------ALELITSFLEKKTLKH----------QQTHRKDNLSSTSLKKSLMIKKLKR 320
           D +         LI         K            +T+  D     ++KK     KL  
Sbjct: 299 DGEYYRHPFGNALIEKAFADYRYKKLLDKGVQTIDGKTYTLDQPFYATVKKGEENPKLVV 358

Query: 321 TYSQFKK 327
              Q + 
Sbjct: 359 KDGQVEA 365


>gi|254479748|ref|ZP_05093030.1| Penicillin-binding protein 5, C-terminal domain [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034315|gb|EEB75107.1| Penicillin-binding protein 5, C-terminal domain [Carboxydibrachium
           pacificum DSM 12653]
          Length = 334

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 14/217 (6%)

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
           S+       + ++L      T EQ + AL+  SAND + A  E+I GS + FA +M+ KA
Sbjct: 1   SENVTKIEGNSIFLSPGEQLTLEQLLYALMLESANDAAIAIAEYIGGSVENFAKMMNEKA 60

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY------- 219
           ++IG  N+ + N +GL D+N  +T  D A +     +N  ++ K  S   ++        
Sbjct: 61  REIGAYNSHFVNPNGLPDENHYSTPYDMAQIARYAMQN-AEFRKIVSTLHYQIPPTNKFD 119

Query: 220 RNRIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           + R +   N+LL          DG+KTGYT  +G  +V S       +++V+MG      
Sbjct: 120 KPRDLWISNRLLKPSRFHYEGADGVKTGYTVAAGQVLVASATRDGHRLISVIMGDEGINI 179

Query: 276 RDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
                ++L+    +  +L  + T + + ++S  L K 
Sbjct: 180 -WTDTIKLLDYGFQNFSLV-KVTQKDEVITSIELGKG 214


>gi|312967428|ref|ZP_07781643.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 2362-75]
 gi|312287625|gb|EFR15530.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 2362-75]
          Length = 310

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 117/278 (42%), Gaps = 26/278 (9%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKY---------SSIVIDVNKNQMTGFKQDE-PRYP 77
           + L    L L++ +   A    A             S++++D+N N++      +  R  
Sbjct: 6   VSLFSLALMLAVPLAPQAVAKMAAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPI 65

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           AS++K+MT  ++ +     +L L+ +  + +S+T          ++  +  + +  +L  
Sbjct: 66  ASISKLMTAMVVLDA----RLPLDEKLKVDISQTP-EMKGVYSRVRLNSEISRKDMLLLA 120

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S N  + +      G  K F   M+ KAK +GM NT +   +GL   N ++TARD  
Sbjct: 121 LMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHN-VSTARDLT 179

Query: 196 ILGILLRKNFPQYYKYFSIRK--FRYRNRIIT----NHNKLLNKM-HNIDGIKTGYTRNS 248
            L ++  K +P   +  + R+    + N   T    N N L+ +   NI   KTG+T  +
Sbjct: 180 KL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAA 238

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           G  +V      + P+  VVM           A  L T 
Sbjct: 239 GHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276


>gi|290581230|ref|YP_003485622.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus mutans
           NN2025]
 gi|254998129|dbj|BAH88730.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus mutans
           NN2025]
          Length = 413

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 77/334 (23%), Positives = 148/334 (44%), Gaps = 39/334 (11%)

Query: 31  MGKILFLSIIMISM------ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKM 83
           M KI+ L  I+IS+      A E        +I ++ N  ++   K  +     AS+TKM
Sbjct: 1   MKKIVCLLFILISLIGFGVKAEENFDVSAKHAIAVEANTGKILYEKDADTTAGIASITKM 60

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALITRS 139
           +T+Y++++ ++S  L  ++++ +S    +     + S + +  + Y T ++ + A +  S
Sbjct: 61  LTVYMVYKEIKSGDLTWSSKVKISDYPYSLTKDYSASNVPMDAREY-TVKELVEASMIAS 119

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-------------- 185
           AN  + A  E + G+E KF  +M  + ++ G+ +    NASGL++K              
Sbjct: 120 ANSAAIALAEKVGGTEPKFVDMMKKQLQEWGITDAKLVNASGLNNKTLGDHIYPDSSSED 179

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIK 241
             + +ARD AI+   L K FPQ  K        +    +  +N +L  M      +DG+K
Sbjct: 180 ENMMSARDVAIVAHHLIKEFPQVLKITEKTNSDFSGNKMETYNYMLPNMPYAREGVDGLK 239

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMG-----MPTSQERDQKALELITSFLEKK---TL 293
           TG T  +G   V + +     +++VV+            R Q    L+          TL
Sbjct: 240 TGTTELAGACFVATSKENGMRLISVVLNADKSDSDDDAARFQATNNLLNYVNNTYEPITL 299

Query: 294 KHQ-QTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
            H+ QT++   +     K++ +    K+ ++  +
Sbjct: 300 IHKGQTYQGSKVKVIDGKRTTVPAVAKKNFTVIQ 333


>gi|229183569|ref|ZP_04310793.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
 gi|228599979|gb|EEK57575.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
          Length = 407

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 68/282 (24%), Positives = 120/282 (42%), Gaps = 21/282 (7%)

Query: 59  IDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 34  IDAKTGDVLYDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 88

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ 
Sbjct: 89  YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSH 148

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  + ++        T    N +   
Sbjct: 149 FVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYF 207

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I+ VVM     +  E  ++  +       
Sbjct: 208 EN-PYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMADYSFGQFV 266

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
           K+T+      HQ+T   +    + L+KS  +   K      K
Sbjct: 267 KQTVLDKHSWHQKTTYLNKDIDSELEKSAELMLKKDEGKNVK 308


>gi|228899954|ref|ZP_04064194.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           4222]
 gi|228859685|gb|EEN04105.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           4222]
          Length = 407

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 70/284 (24%), Positives = 121/284 (42%), Gaps = 21/284 (7%)

Query: 59  IDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K      YPAS TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 34  IDAKTGDVLYDKNAYHRAYPASTTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 88

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ KAK++G +++ 
Sbjct: 89  YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGARDSH 148

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL 231
           +   +GLHD N  TT  D A++   + +N+P+  +  + ++        T    N +   
Sbjct: 149 FVTPNGLHDPNHYTTPYDMAMITKGV-QNYPEILQAMNTKRTTVTTSRQTVSIFNKSNFF 207

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I+ VVM     +  E  ++  +       
Sbjct: 208 EN-PYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMADYSFGQFV 266

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           K+T+      HQ+T   +   ++ L+KS  +   K      K I
Sbjct: 267 KQTVLDKHSWHQKTTYLNKDINSELEKSAELMLKKDEGKNVKTI 310


>gi|82543546|ref|YP_407493.1| D-alanyl-D-alanine endopeptidase [Shigella boydii Sb227]
 gi|81244957|gb|ABB65665.1| penicillin-binding protein 7 [Shigella boydii Sb227]
 gi|320184846|gb|EFW59636.1| Murein-DD-endopeptidase [Shigella flexneri CDC 796-83]
          Length = 313

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 117/278 (42%), Gaps = 26/278 (9%)

Query: 28  IQLMGKILFLSIIMISMASELHAKP---------KYSSIVIDVNKNQMTGFKQDE-PRYP 77
           + L    L L++ +   A    A             S++++D+N N++      +  R  
Sbjct: 9   VSLFSLALMLAVPLAPQAVAKTAAAITASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPI 68

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           AS++K+MT  ++ +     +L L+ +  + +S+T          ++  +  + +  +L  
Sbjct: 69  ASISKLMTAMVVLDA----RLPLDEKLKVDISQTP-EMKGVYSRVRLNSEISRKDMLLLA 123

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S N  + +      G  K F   M+ KAK +GM NT +   +GL   N ++TARD  
Sbjct: 124 LMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHN-VSTARDLT 182

Query: 196 ILGILLRKNFPQYYKYFSIRK--FRYRNRIIT----NHNKLLNKM-HNIDGIKTGYTRNS 248
            L ++  K +P   +  + R+    + N   T    N N L+ +   NI   KTG+T  +
Sbjct: 183 KL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAA 241

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           G  +V      + P+  VVM           A  L T 
Sbjct: 242 GHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 279


>gi|89901123|ref|YP_523594.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodoferax ferrireducens
           T118]
 gi|89345860|gb|ABD70063.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Rhodoferax ferrireducens T118]
          Length = 346

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 120/299 (40%), Gaps = 15/299 (5%)

Query: 7   QSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQM 66
           +    + F+   + S+   + + L     F  I  +  AS+        ++VID   N++
Sbjct: 42  KRKVTRVFVVGKHASLARAKEVSLKPS--FGQIAGLHGASDTLDLKSSVALVIDQETNEV 99

Query: 67  TGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-PSKLYLKEKT 124
              K ++   P ASLTK+MT  ++ E      L  +  I +S+        S   LK  T
Sbjct: 100 LFSKNEQAVLPIASLTKLMTGLVLQEAH----LPTDQMITISQDDVDTEKGSTSRLKVGT 155

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
                + +   +  S N  + A      G    F  LM+ KA+ IGM +T Y   +GL  
Sbjct: 156 TLNRGELLHLALMSSENRAAHALARSYPGGLPVFVGLMNAKAQLIGMTDTHYVEPTGLSS 215

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRII--TNHNKLL-NKMHNIDG 239
           KNQ ++ARD A L  +   + P   +  +   ++    NR +   N N+L+ N   +I  
Sbjct: 216 KNQ-SSARDLAKLVNVAHGD-PILRELTTSPDYQVAVGNRTLQYNNTNRLVKNPSWDIGL 273

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298
            KTGY   +G  +V   +     ++ V +       R   A  +      K  ++    
Sbjct: 274 QKTGYISEAGRCLVMQTKIAGRKLIMVFLDSAGKLTRIADAERVRRWVESKPAIRSNSV 332


>gi|238753350|ref|ZP_04614713.1| D-alanyl-D-alanine endopeptidase [Yersinia ruckeri ATCC 29473]
 gi|238708303|gb|EEQ00658.1| D-alanyl-D-alanine endopeptidase [Yersinia ruckeri ATCC 29473]
          Length = 311

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 99/242 (40%), Gaps = 15/242 (6%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N++      D     AS+TK+MT  +  +     KL L+  I V      +
Sbjct: 46  SAMVVDLKTNKVLYSNNPDHVVPIASITKLMTAMVTLDA----KLPLDEVISVDIHQTKE 101

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  +K  +    +  +L  +  S N  + +      G    F   M+ KAK +GM 
Sbjct: 102 LKGVFSRVKVNSEINRKDMLLLALMSSENRAAASLAHHYPGGYSAFITAMNVKAKSLGMT 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY--YKYFSIRKFRYRNRIIT----N 226
           +T +   +GL   N ++TARD + L +L  K +P        + +   +RN   T    N
Sbjct: 162 HTHFVEPTGLSI-NNVSTARDLSKL-LLATKQYPLIGQLSTSTEKMATFRNPSYTLPFRN 219

Query: 227 HNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+     NI   KTG+T  +G  +V      + P+  VV+           A  L +
Sbjct: 220 TNHLVYNDKWNIQLTKTGFTNQAGHCLVMRTVINNRPVALVVLDAFGKYTHFADANRLRS 279

Query: 286 SF 287
             
Sbjct: 280 WM 281


>gi|226325575|ref|ZP_03801093.1| hypothetical protein COPCOM_03380 [Coprococcus comes ATCC 27758]
 gi|225206058|gb|EEG88412.1| hypothetical protein COPCOM_03380 [Coprococcus comes ATCC 27758]
          Length = 472

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 110/262 (41%), Gaps = 23/262 (8%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            E  A    + IV++     +   K  D   YPAS+TK++T  +  E       +L+ +I
Sbjct: 71  PEGPATYGEAGIVMEAKSGAILYAKNIDGKAYPASITKILTALVALE-----NGNLDDKI 125

Query: 105 PVSKTAAT---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG-SEKKFAI 160
            +++ +     +  + + +      +    + AL+  SAN+V+ A  E + G     F  
Sbjct: 126 TITQNSVDCVAEGDAYIGMIAGEEISLNDALHALLMASANEVAYAIAENVGGLGYDGFVA 185

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
            M+ +AK++G  N+ ++N +GL+ +N  TTARD A++   L +N  ++      +++   
Sbjct: 186 KMNERAKELGAVNSDFENPNGLNAQNHYTTARDMALITQELLENHEEFKTIAQTQQYTIG 245

Query: 221 NRIITNHNKLLNK------------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
              + N  +   +                   KTGYT  +   +V+     +  +++VV+
Sbjct: 246 ATNLVNQARTFQQSDMMFYEGNDYYYPKTIAGKTGYTDEALNTLVSCAADDNLELISVVL 305

Query: 269 GMPTSQERDQKALELITSFLEK 290
                      ++ L+      
Sbjct: 306 KTHGKNV-YPDSINLLEYGFNN 326


>gi|110806113|ref|YP_689633.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri 5 str. 8401]
 gi|110615661|gb|ABF04328.1| penicillin-binding protein 7 [Shigella flexneri 5 str. 8401]
          Length = 310

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 116/278 (41%), Gaps = 26/278 (9%)

Query: 28  IQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQDE-PRYP 77
           + L    L L++     A    A             S++++D+N N++      +  R  
Sbjct: 6   VALFSLALMLAVPFAPDAVAKTAAVNTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPI 65

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           AS++K+MT  ++ +     +L L+ +  + +S+T          ++  +  + +  +L  
Sbjct: 66  ASISKLMTAMVVLDA----RLPLDEKLKVDISQTP-EMKGVYSRVRLNSEISRKDMLLLA 120

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S N  + +      G  K F   M+ KAK +GM NT +   +GL   N ++TARD  
Sbjct: 121 LMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHN-VSTARDLT 179

Query: 196 ILGILLRKNFPQYYKYFSIRK--FRYRNRIIT----NHNKLLNKM-HNIDGIKTGYTRNS 248
            L ++  K +P   +  + R+    + N   T    N N L+ +   NI   KTG+T  +
Sbjct: 180 KL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAA 238

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           G  +V      + P+  VVM           A  L T 
Sbjct: 239 GHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276


>gi|307326560|ref|ZP_07605754.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           violaceusniger Tu 4113]
 gi|306887754|gb|EFN18746.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           violaceusniger Tu 4113]
          Length = 313

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 67/301 (22%), Positives = 115/301 (38%), Gaps = 34/301 (11%)

Query: 20  GSIYIQR-NIQLMGKILFLSIIMISMASELHAK-------PKYSSIVIDVNKNQMTGFKQ 71
           G + I+R    ++     L++ + + A++               + ++D N N+    K 
Sbjct: 5   GGMAIRRWGTAVIASAAALTVAVPANAAQATEARSGPTEVSAKGAYLLDNNTNKELWAKA 64

Query: 72  -DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEKTYF 126
            D  R  AS TK+MT  ++ +   ++ L L  ++ V +      A    SK  L++    
Sbjct: 65  ADTKRPMASTTKLMTAVVVLD---TRGLELGKKVTVKQSYIDYTARVGGSKADLQKGDKL 121

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSE------KKFAILMSNKAKKIGMQNTIYKNAS 180
           T +Q +  L+  S  D + A  +     +      K F   M+ KA  +GM  + Y    
Sbjct: 122 TVKQLLYGLLLPSGCDAAMALADTFGTGDTTAKRTKSFIAQMNKKASALGMTKSHYDTFD 181

Query: 181 GLHDKNQ-ITTARDQAILGILLRKNFPQYYKYFSIRKF--------RYRNRIITNHNKLL 231
           G+ +  Q  TT RD A L      N        S+           R R     N N+LL
Sbjct: 182 GISEGGQNYTTPRDMAKLARHALGNSTLGTVVKSVDTIQKAPAANGRTRTYYWNNTNRLL 241

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
                  GIKTG     G  +V + +     +V V++  P   +R   A +++       
Sbjct: 242 GSYSGAIGIKTGTGTAPGRCLVFAAKRDGRTVVGVILNAP---KRYPDAKKMLDWAFRSH 298

Query: 292 T 292
           T
Sbjct: 299 T 299


>gi|238763822|ref|ZP_04624780.1| D-alanyl-D-alanine endopeptidase [Yersinia kristensenii ATCC 33638]
 gi|238697952|gb|EEP90711.1| D-alanyl-D-alanine endopeptidase [Yersinia kristensenii ATCC 33638]
          Length = 311

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 100/242 (41%), Gaps = 15/242 (6%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S++V+D+  N++      DE    AS+TK+MT  ++ +     KL L+  I V       
Sbjct: 46  SAMVVDLQTNKVIYANNADEVVPIASITKLMTAMVVLDA----KLPLDEIISVDIHQTKE 101

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  ++  +  + +  +L  +  S N  + +      G    F   M+ KAK +GM 
Sbjct: 102 MKGVFSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNAKAKSLGMT 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT--N 226
           NT Y   +GL   N ++TARD   L ++  K +P   +  +  +    FR  N  +   N
Sbjct: 162 NTRYVEPTGLSI-NNVSTARDLTKL-LIATKQYPLIGQLSTTTEKMATFRDPNYTLPFRN 219

Query: 227 HNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+     NI   KTG+T  +G  +       + P+  VV+           A  L +
Sbjct: 220 TNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPVALVVLDAFGKYTHFADANRLRS 279

Query: 286 SF 287
             
Sbjct: 280 WM 281


>gi|29839835|ref|NP_828941.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila caviae GPIC]
 gi|29834182|gb|AAP04819.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila caviae GPIC]
          Length = 433

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 71/317 (22%), Positives = 121/317 (38%), Gaps = 39/317 (12%)

Query: 24  IQRNIQLMGKILFLSIIMI--SMASELHAKPKYSSI-VIDVNKNQMTGFKQ-DEPRYPAS 79
           + R     G I F + I    S A+    + + +++ VI     ++   K  D+  YPAS
Sbjct: 1   MTRVFFRSGLIGFFAGIFTIPSYANSPFPETRGNAVAVIQSETGKVLYAKDIDKRIYPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--------------------NPSKLY 119
           +TK+ T   I          LN  I V + A                       +   + 
Sbjct: 61  MTKIATALFILRKHPDL---LNRFITVKQDAIASITPQAKKQSGYRSPPHWLETDGVTIQ 117

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           L+ K   +      AL+  SAND +       SGS  +F   +++  K+IG  +T + N 
Sbjct: 118 LQNKEEVSGWDLFHALLICSANDAANTLAMACSGSVSEFMKQLNSFLKEIGCADTHFNNP 177

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLL-- 231
            GLH  N  TTARD   +     K  P + +      ++       + R++   NKL+  
Sbjct: 178 HGLHHPNHYTTARDLTSIMREGLKE-PLFRQVIRTTNYKMAATNLSQERVLNLTNKLILP 236

Query: 232 ---NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
                     G KTG T+++G N+V + +     I+ +  G PT  E  +  + L     
Sbjct: 237 GSTYYYPPALGGKTGTTKDAGKNLVFAAKKHGRSIITIAAGYPTMGELYEDVIALCEGVF 296

Query: 289 EKKTLKHQQTHRKDNLS 305
            +  L+       +  +
Sbjct: 297 NEPVLRRYLIPPTEKYT 313


>gi|153813456|ref|ZP_01966124.1| hypothetical protein RUMOBE_03876 [Ruminococcus obeum ATCC 29174]
 gi|149830477|gb|EDM85569.1| hypothetical protein RUMOBE_03876 [Ruminococcus obeum ATCC 29174]
          Length = 334

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 60/255 (23%), Positives = 110/255 (43%), Gaps = 21/255 (8%)

Query: 56  SIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-- 112
           +++++    ++ G    +E  YPAS+TK+MT  +  E L+     LN +I ++       
Sbjct: 80  AVLMNAKSGKVIGDINGEEQMYPASMTKIMTTILAIENLKD----LNQEITITNDMVADL 135

Query: 113 --QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             Q+  +   +          +  ++  S  +   A  + ++GS   F  LM+ KA+K+G
Sbjct: 136 YVQDAMQAGFQPNETVKAIDLLYGVMLPSGAECCVALADTVAGSVSDFVTLMNEKAEKLG 195

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYK--YFSIRKFRYRNRIITN 226
           M  T + + SGLH ++  +TA+D A+L     KN  F +  +  Y S          IT 
Sbjct: 196 MTGTHFSSISGLHREDHYSTAKDIALLLRYAIKNDTFREIIESPYHSTSGTNIHPDGITF 255

Query: 227 HNKLLNKMHN-------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP-TSQERDQ 278
           ++ +   + +       I G KTGYT  +G  + +         + V  G P T      
Sbjct: 256 YSTMFKNLSDTSVIDGEIKGGKTGYTSQAGHCLASFAEIDGVEYILVTAGAPGTGNPHID 315

Query: 279 KALELITSFLEKKTL 293
            A++L     E  ++
Sbjct: 316 DAVKLYNRLGESSSV 330


>gi|323694964|ref|ZP_08109114.1| hypothetical protein HMPREF9475_03978 [Clostridium symbiosum
           WAL-14673]
 gi|323501054|gb|EGB16966.1| hypothetical protein HMPREF9475_03978 [Clostridium symbiosum
           WAL-14673]
          Length = 529

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 133/292 (45%), Gaps = 28/292 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-- 111
           + I++D N   +   K     Y PAS+TK++T  I+ E     +  ++  +  S+ A   
Sbjct: 39  AGIIMDANSGAVIYGKNIHATYAPASITKVLTALIVLE-----RCSMDETVTFSQNAVYN 93

Query: 112 -TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
              N S          + +  + AL+ +SAN+ + A  E ISG+ ++FA+LM+ KA ++G
Sbjct: 94  VESNSSSAGYDTGDTASVKDCLYALLLKSANEAANALAEHISGTTEEFAVLMNEKAAELG 153

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-------RYRNRI 223
            Q++ + N SGL+D+N   +A D A++     +N   + K  +   +           + 
Sbjct: 154 CQDSHFSNPSGLNDENHYVSAYDMALITKAAFEN-ADFSKIVATTYYELPPNKKNPEGQG 212

Query: 224 ITNHNKLLNKMH------NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           I+  NK++ K        ++ G KTGYT  +   +V   +  D   V V++    +Q  D
Sbjct: 213 ISPGNKMIKKNWPDQYRPDVIGGKTGYTSIALNTLVIGAQQGDTKFVTVILHSSGTQYSD 272

Query: 278 QKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKID 329
            KAL L   F   K ++     +    + +++   L I  L  +  Q   ID
Sbjct: 273 TKAL-LNFGFNNFKAVRIADYDK----TFSTIGDDLKISGLPTSEKQVLTID 319


>gi|331668834|ref|ZP_08369682.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli TA271]
 gi|331064028|gb|EGI35939.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli TA271]
          Length = 313

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 117/278 (42%), Gaps = 26/278 (9%)

Query: 28  IQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQDE-PRYP 77
           + L    L L++ +   A    A             S++++D+N N++      +  R  
Sbjct: 9   VSLFSLALMLAVPLAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPI 68

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           AS++K+MT  ++ +     +L L+ +  + +S+T          ++  +  + +  +L  
Sbjct: 69  ASISKLMTAMVVLDA----RLPLDEKLKVDISQTP-EMKGVYSRVRLNSEISRKDMLLLA 123

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S N  + +      G  K F   M+ KAK +GM NT +   +GL   N ++TARD  
Sbjct: 124 LMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHN-VSTARDLT 182

Query: 196 ILGILLRKNFPQYYKYFSIRK--FRYRNRIIT----NHNKLLNKM-HNIDGIKTGYTRNS 248
            L ++  K +P   +  + R+    + N   T    N N L+ +   NI   KTG+T  +
Sbjct: 183 KL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAA 241

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           G  +V      + P+  VVM           A  L T 
Sbjct: 242 GHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 279


>gi|49477173|ref|YP_035504.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|196035444|ref|ZP_03102849.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           W]
 gi|196046527|ref|ZP_03113752.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           03BB108]
 gi|225863238|ref|YP_002748616.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           03BB102]
 gi|49328729|gb|AAT59375.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|195992121|gb|EDX56084.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           W]
 gi|196022711|gb|EDX61393.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           03BB108]
 gi|225788080|gb|ACO28297.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 03BB102]
          Length = 428

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 71/335 (21%), Positives = 135/335 (40%), Gaps = 37/335 (11%)

Query: 22  IYIQRNIQLMGKILFLSIIMISM---------ASELHAKPKYS-------SIVIDVNKNQ 65
           +  ++ +  +  I    +  +++           ++   PK         +  ID     
Sbjct: 2   VNFKKILAFITVICLFFLTPMTLRAETNIGVNPEQVAPPPKEGPNVFSQFATTIDAKTGD 61

Query: 66  MTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK--E 122
           +   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S   ++   
Sbjct: 62  ILYDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSNYQIEFQP 116

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
                    ++ L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GL
Sbjct: 117 GETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGL 176

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLNKMHNID 238
           HD N  TT  D A++   ++K +P+  +  + ++        T    N +          
Sbjct: 177 HDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYFEN-PFSI 234

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLEKKTL--- 293
           G KTG+T  +   +V       + I+ VVM     +  E  ++  +       K+T+   
Sbjct: 235 GGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMADYSFGQFVKQTVLDK 294

Query: 294 --KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
              HQ+T   +    + L+KS  +   K      K
Sbjct: 295 HSWHQKTTYLNKDIDSELEKSAELMLKKDEGKNVK 329


>gi|289806971|ref|ZP_06537600.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 177

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 10/173 (5%)

Query: 32  GKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLY 87
             +LFL    +    +  A P     + I++D    ++      DE   PASLTK+MT Y
Sbjct: 5   SVLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSY 64

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSAN 141
           ++ + L++ K+ L   + V K A        +  S ++LK     +       +I +S N
Sbjct: 65  VVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIIIQSGN 124

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           D   A  ++++GS++ F  LM+  AK++G+ NT ++   GL    Q +TARD 
Sbjct: 125 DACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDM 177


>gi|225572130|ref|ZP_03780994.1| hypothetical protein RUMHYD_00424 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040396|gb|EEG50642.1| hypothetical protein RUMHYD_00424 [Blautia hydrogenotrophica DSM
           10507]
          Length = 370

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 113/248 (45%), Gaps = 25/248 (10%)

Query: 58  VIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-QNP 115
           + D++  ++   K   E  YPAS+TK+MT  + F+  +     L++ + + +     ++ 
Sbjct: 126 LFDLSSGEVLYSKDLYEKVYPASITKLMTAMLAFQSGK-----LDSTVTIQQEDLDLESG 180

Query: 116 SKL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           S++         T +Q +  L+  S ND ++A   ++ GS++KF  +M++ A K+GM  T
Sbjct: 181 SQVCGFMVGDQVTLDQLVRCLLVYSGNDAASAIARYVGGSQEKFVAMMNDYAAKLGMTGT 240

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR---------NRIIT 225
            ++N  GLH +N  TT  D  ++      N+ +Y +   +  +            +  + 
Sbjct: 241 HFENPHGLHTENHYTTVYDIYLMLNEAM-NYSEYLEIAQLSSYTANFEHADGSEASITLE 299

Query: 226 NHNKLLN------KMHNIDGIKTGYTRNSGFNIVTSLRYK-DDPIVAVVMGMPTSQERDQ 278
           + +  L       K   + G KTG T ++G  +   ++     P V +VM   T +   Q
Sbjct: 300 STDHYLTGETTPPKDVTVLGGKTGTTSDAGNCLALLVQNAYGQPYVCIVMNASTKEILYQ 359

Query: 279 KALELITS 286
           +   L++ 
Sbjct: 360 QMNTLLSQ 367


>gi|91211421|ref|YP_541407.1| D-alanyl-D-alanine endopeptidase [Escherichia coli UTI89]
 gi|110642343|ref|YP_670073.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 536]
 gi|117624337|ref|YP_853250.1| D-alanyl-D-alanine endopeptidase [Escherichia coli APEC O1]
 gi|237704597|ref|ZP_04535078.1| penicillin-binding protein 7 [Escherichia sp. 3_2_53FAA]
 gi|300981491|ref|ZP_07175572.1| beta-lactamase [Escherichia coli MS 200-1]
 gi|331658214|ref|ZP_08359176.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli TA206]
 gi|91072995|gb|ABE07876.1| penicillin-binding protein 7 precursor
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli UTI89]
 gi|110343935|gb|ABG70172.1| D-alanyl-D-alanine- endopeptidase [Escherichia coli 536]
 gi|115513461|gb|ABJ01536.1| D-alanyl-D-alanine endopeptidase [Escherichia coli APEC O1]
 gi|226900963|gb|EEH87222.1| penicillin-binding protein 7 [Escherichia sp. 3_2_53FAA]
 gi|294492842|gb|ADE91598.1| penicillin-binding protein 7 [Escherichia coli IHE3034]
 gi|300307564|gb|EFJ62084.1| beta-lactamase [Escherichia coli MS 200-1]
 gi|315285794|gb|EFU45234.1| beta-lactamase [Escherichia coli MS 110-3]
 gi|315299372|gb|EFU58624.1| beta-lactamase [Escherichia coli MS 16-3]
 gi|323951931|gb|EGB47805.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H252]
 gi|323955899|gb|EGB51652.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H263]
 gi|331056462|gb|EGI28471.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli TA206]
          Length = 313

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 121/278 (43%), Gaps = 26/278 (9%)

Query: 28  IQLMGKILFLSIIMIS------MASELHAKPKY---SSIVIDVNKNQMTGFKQDE-PRYP 77
           + L    L L++          +A+   ++P+    S++++D+N N++      +  R  
Sbjct: 9   VSLFSLALMLAVPFAPQAVAKTVAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPI 68

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           AS++K+MT  ++ +     +L L+ +  + +S+T          ++  +  + +  +L  
Sbjct: 69  ASISKLMTAMVVLDA----RLPLDEKLKVDISQTP-EMKGVYSRVRLNSEISRKDMLLLA 123

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S N  + +      G  K F   M+ KAK +GM NT +   +GL   N ++TARD  
Sbjct: 124 LMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHN-VSTARDLT 182

Query: 196 ILGILLRKNFPQYYKYFSIRK--FRYRNRIIT----NHNKLLNKM-HNIDGIKTGYTRNS 248
            L ++  K +P   +  + R+    + N   T    N N L+ +   NI   KTG+T  +
Sbjct: 183 KL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAA 241

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           G  +V      + P+  VVM           A  L T 
Sbjct: 242 GHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 279


>gi|254733982|ref|ZP_05191696.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Western North America USA6153]
          Length = 407

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 68/282 (24%), Positives = 120/282 (42%), Gaps = 21/282 (7%)

Query: 59  IDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 34  IDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 88

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ 
Sbjct: 89  YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSH 148

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  + ++        T    N +   
Sbjct: 149 FVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYF 207

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I+ VVM     +  E  ++  +       
Sbjct: 208 EN-PFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMADYSFGQFV 266

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
           K+T+      HQ+T   +    + L+KS  +   K      K
Sbjct: 267 KQTVLDKHSWHQKTTYLNKDIDSELEKSAELMLKKDEVKNVK 308


>gi|199597923|ref|ZP_03211348.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus HN001]
 gi|258507249|ref|YP_003170000.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus GG]
 gi|199591180|gb|EDY99261.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus HN001]
 gi|257147176|emb|CAR86149.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus GG]
 gi|259648615|dbj|BAI40777.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus GG]
          Length = 436

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/270 (20%), Positives = 117/270 (43%), Gaps = 32/270 (11%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             +++ I+    ++   K      P AS+TKM+++ ++ + ++S K+  + ++ + ++  
Sbjct: 40  AKAAVAIEPTTGKVLYAKNASTVLPIASMTKMISIELVLDAIKSGKIKWDDKVTLDQSIW 99

Query: 112 T----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
           T    ++ S + L+    ++  +   A +  SAN       + ++GS++KF   M  K K
Sbjct: 100 TISQDRDLSNVPLRRDGSYSVRELYDASLIYSANAAMMLLAKAVAGSQEKFVNQMDAKLK 159

Query: 168 KIGMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFS 213
             G+ +    N +GL               +     +A+D A +   L K+ P+  K  S
Sbjct: 160 SWGITDAKIVNVTGLNNSQLKDAKVPGTGDNAENEMSAKDMAQVAQHLIKDHPEVLKTTS 219

Query: 214 IRKFRYRNRI-----ITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           I +  +R        + N + +L      +K   +DG+KTG +  +G     ++      
Sbjct: 220 IARQTFRKGTDDAINMENWDWMLKGLVSYDKNLPVDGLKTGTSDAAGDCFTGTVEKNGMR 279

Query: 263 IVAVVMGMPTSQE--RDQKALELITSFLEK 290
           I+ VV+      +  R  +  +L+T  LE 
Sbjct: 280 IITVVLHANGDAKTRRFDETKKLMTHVLEN 309


>gi|327253261|gb|EGE64915.1| D-alanyl-D-alanine endopeptidase [Escherichia coli STEC_7v]
          Length = 310

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 117/278 (42%), Gaps = 26/278 (9%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKY---------SSIVIDVNKNQMTGFKQDE-PRYP 77
           + L    L L++     A    A             S++++D+N N++      +  R  
Sbjct: 6   VSLFSLALMLAVPFAPQAVAKTAVATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPI 65

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           AS++K+MT  ++ +     +L L+ +  + +S+T          ++  +  + ++ +L  
Sbjct: 66  ASISKLMTAMVVLDA----RLPLDEKLKVDISQTP-EMKGVYSRVRLNSEISRKEMLLLA 120

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S N  + +      G  K F   M+ KAK +GM NT +   +GL   N ++TARD  
Sbjct: 121 LMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHN-VSTARDLT 179

Query: 196 ILGILLRKNFPQYYKYFSIRK--FRYRNRIIT----NHNKLLNKM-HNIDGIKTGYTRNS 248
            L ++  K +P   +  + R+    + N   T    N N L+ +   NI   KTG+T  +
Sbjct: 180 KL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAA 238

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           G  +V      + P+  VVM           A  L T 
Sbjct: 239 GHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276


>gi|238920707|ref|YP_002934222.1| D-alanyl-D-alanine endopeptidase [Edwardsiella ictaluri 93-146]
 gi|238870276|gb|ACR69987.1| D-alanyl-D-alanine endopeptidase [Edwardsiella ictaluri 93-146]
          Length = 309

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 98/261 (37%), Gaps = 18/261 (6%)

Query: 44  MASELHAK---PKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
            A+EL A       S++V+D+N +Q+      D     AS+TK+MT  +  +   +    
Sbjct: 32  AAAELRAPLTLASGSAMVVDLNNHQVIYASHPDIQVPIASITKLMTAMVTLDAHPN---- 87

Query: 100 LNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
           L+  I V      +       ++  +  T  Q +L  +  S N  +        G    F
Sbjct: 88  LDEVIAVDIHRTKELKGVFSRVRVGSELTRRQMLLLALMSSENRAAATLAHHYPGGYDAF 147

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR--- 215
              M+ KA+ +GM  T Y   +GL   + +++ARD   L     K +P   +  +     
Sbjct: 148 IRAMNAKARALGMTRTHYVEPTGLS-PDNVSSARDLVKLLQAA-KGYPLIGELSTTETRS 205

Query: 216 -KFRYRNR--IITNHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
             F +        N N LL     +I   KTG+T  +G  +         P+  VV+   
Sbjct: 206 VTFTHPTYTETFNNTNHLLRNDKWDIQMTKTGFTNQAGHCLAMRTVIGGRPVALVVLDAF 265

Query: 272 TSQERDQKALELITSFLEKKT 292
                   A  L    L  K+
Sbjct: 266 GKYTHFADANRLREWMLTGKS 286


>gi|229823246|ref|ZP_04449315.1| hypothetical protein GCWU000282_00544 [Catonella morbi ATCC 51271]
 gi|229787412|gb|EEP23526.1| hypothetical protein GCWU000282_00544 [Catonella morbi ATCC 51271]
          Length = 405

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 122/286 (42%), Gaps = 35/286 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S +VID + +++   ++    YP AS++K+M++Y+ ++ ++  K+ L+ +I V +     
Sbjct: 70  SYVVIDQDTHKVLMEREGNKPYPIASMSKIMSVYLTYKAIEEGKIKLDDKIKVPEAIVRD 129

Query: 114 -----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                  S   L     +T +  +  ++  S ND +T     I GSE++    +  +  +
Sbjct: 130 FTDNAELSNAGLVTDAEYTVQDLLYGIMLASGNDATTLLMSHIYGSEQEAVAAIRRQLDE 189

Query: 169 IGMQNTIYKNASGLH---------------DKNQITTARDQAILGILLRKNFPQYYKYFS 213
            G++N  +   SG                 D     +A D A++   + + +PQ  +  S
Sbjct: 190 WGIENYEFYTTSGAPNKYLPESYWIEGSTKDSQNKMSAADVALMAQYITEKYPQILELSS 249

Query: 214 IRKFRY-----RNRIITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
            R++           + N+N LL         + G+K+GYT  +G   VT+       ++
Sbjct: 250 AREYTMAKDSDHPIKMANNNLLLEGAQYGRPGVTGLKSGYTDEAGKCFVTTTTENGRKMI 309

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLK 310
           AVVMG+       ++   L+         KH   ++ + L++  L 
Sbjct: 310 AVVMGVQEPYSSYEETKILLDGLN-----KHPDLYQLEGLATNLLP 350


>gi|30261380|ref|NP_843757.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Ames]
 gi|47526551|ref|YP_017900.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|65318644|ref|ZP_00391603.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A2012]
 gi|165870392|ref|ZP_02215047.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0488]
 gi|170706252|ref|ZP_02896713.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0389]
 gi|227815884|ref|YP_002815893.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. CDC 684]
 gi|229603883|ref|YP_002865796.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0248]
 gi|254726225|ref|ZP_05188007.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A1055]
 gi|254753718|ref|ZP_05205753.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Vollum]
 gi|254758814|ref|ZP_05210841.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Australia 94]
 gi|30255234|gb|AAP25243.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
           Ames]
 gi|47501699|gb|AAT30375.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|164713887|gb|EDR19409.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0488]
 gi|170128786|gb|EDS97652.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0389]
 gi|227004270|gb|ACP14013.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
           CDC 684]
 gi|229268291|gb|ACQ49928.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0248]
          Length = 428

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 68/282 (24%), Positives = 120/282 (42%), Gaps = 21/282 (7%)

Query: 59  IDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 55  IDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 109

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ 
Sbjct: 110 YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSH 169

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  + ++        T    N +   
Sbjct: 170 FVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYF 228

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I+ VVM     +  E  ++  +       
Sbjct: 229 EN-PFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMADYSFGQFV 287

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
           K+T+      HQ+T   +    + L+KS  +   K      K
Sbjct: 288 KQTVLDKHSWHQKTTYLNKDIDSELEKSAELMLKKDEVKNVK 329


>gi|49184208|ref|YP_027460.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Sterne]
 gi|49178135|gb|AAT53511.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Sterne]
          Length = 434

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 68/282 (24%), Positives = 120/282 (42%), Gaps = 21/282 (7%)

Query: 59  IDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 61  IDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 115

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ 
Sbjct: 116 YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSH 175

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  + ++        T    N +   
Sbjct: 176 FVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYF 234

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I+ VVM     +  E  ++  +       
Sbjct: 235 EN-PFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMADYSFGQFV 293

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
           K+T+      HQ+T   +    + L+KS  +   K      K
Sbjct: 294 KQTVLDKHSWHQKTTYLNKDIDSELEKSAELMLKKDEVKNVK 335


>gi|30019428|ref|NP_831059.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
 gi|29894972|gb|AAP08260.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
          Length = 439

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 69/284 (24%), Positives = 121/284 (42%), Gaps = 21/284 (7%)

Query: 59  IDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K      YPAS TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 66  IDAKTGDVLYDKNAYHRAYPASTTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 120

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ KAK++G +++ 
Sbjct: 121 YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSH 180

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  + ++        T    N +   
Sbjct: 181 FVTPNGLHDPNHYTTPYDMAMITKGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSNFF 239

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I++VVM     +  E  ++  E       
Sbjct: 240 EN-PYSIGGKTGFTNEARNTLVLLNEKDGNRIISVVMASQRPEIYEDLKQMAEYSFGQFT 298

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           K+ +      HQ+T   +   ++ L++S  +   K      K I
Sbjct: 299 KQMVLDKHNWHQKTTYLNKDVNSELEQSAELMLKKDEGKNVKTI 342


>gi|297155472|gb|ADI05184.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces bingchenggensis
           BCW-1]
          Length = 302

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 116/298 (38%), Gaps = 31/298 (10%)

Query: 29  QLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM 83
            ++     +S+++    ++    P       + ++D + N+    K  D  R  AS TK+
Sbjct: 7   AVIASTAAVSVVLPVSTAQAAGGPSGISAKGAYLLDNSANKQLWAKAADTKRPMASTTKL 66

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           MT  ++ +   S+ L+L+ ++ V +      A    SK  LK+    T +Q +  L+  S
Sbjct: 67  MTAVVVLD---SRGLNLSKKVTVKQSYIDYVARVGGSKADLKKGDKLTVKQLLYGLMLPS 123

Query: 140 ANDVSTAFGEFISGSE------KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ-ITTAR 192
             D + A  +     +      K F   M+ KA  +GM  T Y    G+    Q  TT R
Sbjct: 124 GCDAAMALADTFGTGDTTAKRTKSFISQMNKKASALGMTKTHYDTFDGISYGGQNYTTPR 183

Query: 193 DQAILGILLRKNFPQYYKYFSIRKF--------RYRNRIITNHNKLLNKMHNIDGIKTGY 244
           D A L      N        S+           R R     N N+LL       GIKTG 
Sbjct: 184 DMAKLARHALGNSTLSTVVKSVDTVQKAPAANGRTRTYSWNNTNRLLGSYSGAIGIKTGT 243

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE-KKTLKHQQTHRK 301
               G  +V + +     +V V++  P   +R   A +++        T+K +Q  + 
Sbjct: 244 GTAPGRCLVFAAKRNGRTVVGVILNAP---KRYPDAKKMLDWAFNSTTTVKWRQLPKG 298


>gi|291542985|emb|CBL16095.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus bromii L2-63]
          Length = 450

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 70/311 (22%), Positives = 125/311 (40%), Gaps = 36/311 (11%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY---------SSIVIDVNKNQMTGFKQ-DE 73
           +++ I     +L +  I+I  A        Y         S ++++++  Q    K  D 
Sbjct: 1   MRKTITKTLSLLCMLCIIICSAFTTAGAASYPNDVKTESDSILLVNMDSGQTVYEKDADS 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLK--EKTYFT 127
            RYPAS TK+MT  I  E +       NT+IP+ ++          S   ++       T
Sbjct: 61  KRYPASTTKIMTYIIAVENIADLD---NTKIPIKQSVLDVLKNTGSSLANVENHVGKSMT 117

Query: 128 TEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
               + +++  S ND +    ++I  G+   F  LM+ KAK++G +NT + N  GLHD +
Sbjct: 118 AIDLLYSMMVPSGNDAAMVLADYIGEGNVDNFVKLMNEKAKELGCENTHFANPDGLHDPD 177

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLN-------KMHNI 237
             TTARD   +        P++ +  +   +     +  +   N L++            
Sbjct: 178 HYTTARDMYKITTYAL-TLPRFEEITNTCTYTCDGDDTALVTTNYLIDANRGGEYYYMYA 236

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ------KALELITSFLEKK 291
            GIKTG T  +G  +VT+        +A+++  P  +   +       A +L    L   
Sbjct: 237 KGIKTGTTNEAGRCLVTTASADGYSYMAILLHAPYEEGVTEDYATMTDAADLFRWALTSL 296

Query: 292 TLKHQQTHRKD 302
            +    T  K 
Sbjct: 297 EMNTVATSSKP 307


>gi|121610552|ref|YP_998359.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
           [Verminephrobacter eiseniae EF01-2]
 gi|121555192|gb|ABM59341.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Verminephrobacter eiseniae EF01-2]
          Length = 372

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 21/238 (8%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++V+D + N++   K D    P ASLTK+MT  +I +     KL ++  + +++      
Sbjct: 125 ALVVDQDTNEVLLSKNDHAVLPIASLTKLMTGLLISQA----KLPMDELLTITQDDVDME 180

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+  L   T  T    +   +  S N  + A G    G    F   M+ +A+++GM +
Sbjct: 181 KGSRSRLTVGTTLTRGAMLHLALMASENRAAHALGRTYPGGLAAFVAQMNAQARRLGMTD 240

Query: 174 TIYKNASGLHDKNQITTARDQAIL------GILLRK--NFPQYYKYFSIRKFRYRNRIIT 225
           T Y   +GL  +NQ ++ARD A L        LLR+    P Y      +  +Y      
Sbjct: 241 THYAEPTGLSSRNQ-SSARDLATLVNVTHADPLLRELSTSPDYEVEVGRKTLQYN----- 294

Query: 226 NHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           N N+L+ N   +I   KTGY   +G  +V   +     ++ V +       R   A  
Sbjct: 295 NTNRLVKNPTWDIGLQKTGYISEAGRCLVMQAQVAGRKLIMVFLDSAGKFSRIADAER 352


>gi|229195572|ref|ZP_04322338.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
 gi|228587821|gb|EEK45873.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
          Length = 407

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/282 (24%), Positives = 120/282 (42%), Gaps = 21/282 (7%)

Query: 59  IDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 34  IDAKTGDVLYDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 88

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ 
Sbjct: 89  YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSH 148

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  + ++        T    N +   
Sbjct: 149 FVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYF 207

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I+ VVM     +  E  ++  +       
Sbjct: 208 EN-PYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMADYSFGQFV 266

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
           K+T+      HQ+T   +    + L+KS  +   K      K
Sbjct: 267 KQTVLDKHSWHQKTTYLNKDIDSELEKSAELMLKKDEGKNVK 308


>gi|218902481|ref|YP_002450315.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH820]
 gi|218536407|gb|ACK88805.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH820]
          Length = 428

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 72/335 (21%), Positives = 135/335 (40%), Gaps = 37/335 (11%)

Query: 22  IYIQRNIQLMGKILFLSIIMISM---------ASELHAKPKYS-------SIVIDVNKNQ 65
           +  ++ +  +  I    +  +++           ++   PK         +  ID     
Sbjct: 2   VNFKKILAFITVICLFFLTPMTLRAETNIGVNPEQVAPPPKEGPNVFSQFATTIDAKTGD 61

Query: 66  MTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK--E 122
           +   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S   ++   
Sbjct: 62  ILYDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSNYQIEFQP 116

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
                    ++ L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GL
Sbjct: 117 GETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGL 176

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLNKMHNID 238
           HD N  TT  D A++   ++K +P+  +  + ++        T    N +          
Sbjct: 177 HDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYFEN-PYSI 234

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLEKKTL--- 293
           G KTG+T  +   +V       + IV VVM     +  E  ++  +       K+T+   
Sbjct: 235 GGKTGFTNEARNTLVLLNEKDGNRIVNVVMASQRPEIYEDLKQMADYSFGQFVKQTVLDK 294

Query: 294 --KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
              HQ+T   +    + L+KS  +   K      K
Sbjct: 295 HSWHQKTTYLNKDIDSELEKSAELMLKKDEGKNVK 329


>gi|50083539|ref|YP_045049.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter sp. ADP1]
 gi|49529515|emb|CAG67227.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter sp. ADP1]
          Length = 352

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 57/247 (23%), Positives = 110/247 (44%), Gaps = 15/247 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             +++V+D    ++   K  +     ASLTK+MT  +  +     +L ++ +I + +   
Sbjct: 108 ARAALVMDAQTGEVLYSKNTNTSMPIASLTKLMTAVVTSDA----RLDMSEEITLEQIDF 163

Query: 112 TQNP---SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                  S   L+        + +L  + +S N  + A      G    F   M+ KA++
Sbjct: 164 AGAGGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRPAFVAAMNAKARQ 223

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR--NRII-- 224
           +GM +T Y  +SGL D + +++ARD  IL     + +    ++ +   + +    R++  
Sbjct: 224 LGMTSTHYVESSGL-DPHNVSSARDLGILVSAASQ-YGLIRQFSTTPSYDFNLGYRVLKS 281

Query: 225 TNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            N N L+ N   NI+  KTGY   +G  +V        P V V++G  ++Q R+  A  L
Sbjct: 282 NNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVVVLLGASSTQARNNDATNL 341

Query: 284 ITSFLEK 290
           +    ++
Sbjct: 342 LNWLAQQ 348


>gi|324013985|gb|EGB83204.1| beta-lactamase [Escherichia coli MS 60-1]
          Length = 309

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 121/278 (43%), Gaps = 26/278 (9%)

Query: 28  IQLMGKILFLSIIMIS------MASELHAKPKY---SSIVIDVNKNQMTGFKQDE-PRYP 77
           + L    L L++          +A+   ++P+    S++++D+N N++      +  R  
Sbjct: 9   VSLFSLALMLAVPFAPQAVAKTVAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPI 68

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           AS++K+MT  ++ +     +L L+ +  + +S+T          ++  +  + +  +L  
Sbjct: 69  ASISKLMTAMVVLDA----RLPLDEKLKVDISQTP-EMKGVYSRVRLNSEISRKDMLLLA 123

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S N  + +      G  K F   M+ KAK +GM NT +   +GL   N ++TARD  
Sbjct: 124 LMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHN-VSTARDLT 182

Query: 196 ILGILLRKNFPQYYKYFSIRK--FRYRNRIIT----NHNKLLNKM-HNIDGIKTGYTRNS 248
            L ++  K +P   +  + R+    + N   T    N N L+ +   NI   KTG+T  +
Sbjct: 183 KL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAA 241

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           G  +V      + P+  VVM           A  L T 
Sbjct: 242 GHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 279


>gi|254992369|ref|ZP_05274559.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           J2-064]
          Length = 272

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 118/249 (47%), Gaps = 12/249 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
             +A   YS     V   +    +  +   P ASLTK+MT +++ E + + +L  + ++ 
Sbjct: 30  SANATAVYS-----VENGEPLYEENADKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLD 84

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           + +       S   + +K  ++      A++T SAND +   G+ + G    F   M+N+
Sbjct: 85  LVRLDDPSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLGDRLDG--ANFPKEMNNQ 142

Query: 166 AKKIGMQN-TIYKNASGLHDKNQ--ITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RN 221
           AKK+GM + T + +ASGL    +  ++T +D  +L   L    P+  +  S       + 
Sbjct: 143 AKKLGMSSKTTFVSASGLDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKSSVTTDKG 202

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
             + + N  L  +  +DG+KTG+T  +G+  + +       ++++V+   T+++R +   
Sbjct: 203 AKLESTNDSLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTE 262

Query: 282 ELITSFLEK 290
           +L+    ++
Sbjct: 263 KLMEVGFKE 271


>gi|291005226|ref|ZP_06563199.1| putative penicillin-binding protein [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 365

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 98/243 (40%), Gaps = 14/243 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S I+ DV   ++   +    R+ PAS  K++T  +         L+++  +  ++  A
Sbjct: 45  AASWILADVTSGEVLAARDSHARHRPASAIKVLTALVAIR-----DLNMSDTLVATQADA 99

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            Q  S++ L     +T EQ +  L+ +S ND + A    + G E   A  M+  A  +G 
Sbjct: 100 DQEGSRVGLHPGVTYTVEQVVTGLLMQSGNDAAHALAMKLGGPEVMTA-RMNELAHHLGA 158

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RIITN 226
            +T     SGL      ++A D A++     +  P++ +  + +             + +
Sbjct: 159 LDTRAATPSGLDGPGMSSSAYDLALVFRAAMQR-PEFARAINTQHTVLPGPPGQPLEVWS 217

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-DQKALELIT 285
            N +L       G KTG+T ++    + +       IVAV++       R   + + L+ 
Sbjct: 218 DNAVLLNYAGALGGKTGFTDDARHTFIAAAERDGRRIVAVLLRGENQPLRLSSQTMRLLD 277

Query: 286 SFL 288
              
Sbjct: 278 YGF 280


>gi|134103018|ref|YP_001108679.1| putative penicillin-binding protein [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133915641|emb|CAM05754.1| putative penicillin-binding protein [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 430

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 98/243 (40%), Gaps = 14/243 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S I+ DV   ++   +    R+ PAS  K++T  +         L+++  +  ++  A
Sbjct: 110 AASWILADVTSGEVLAARDSHARHRPASAIKVLTALVAIR-----DLNMSDTLVATQADA 164

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            Q  S++ L     +T EQ +  L+ +S ND + A    + G E   A  M+  A  +G 
Sbjct: 165 DQEGSRVGLHPGVTYTVEQVVTGLLMQSGNDAAHALAMKLGGPEVMTA-RMNELAHHLGA 223

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RIITN 226
            +T     SGL      ++A D A++     +  P++ +  + +             + +
Sbjct: 224 LDTRAATPSGLDGPGMSSSAYDLALVFRAAMQR-PEFARAINTQHTVLPGPPGQPLEVWS 282

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-DQKALELIT 285
            N +L       G KTG+T ++    + +       IVAV++       R   + + L+ 
Sbjct: 283 DNAVLLNYAGALGGKTGFTDDARHTFIAAAERDGRRIVAVLLRGENQPLRLSSQTMRLLD 342

Query: 286 SFL 288
              
Sbjct: 343 YGF 345


>gi|15639787|ref|NP_219237.1| serine-type D-Ala-D-Ala carboxypeptidase (dacC) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189026025|ref|YP_001933797.1| serine-type D-Ala-D-Ala carboxypeptidase [Treponema pallidum subsp.
           pallidum SS14]
 gi|3323112|gb|AAC65769.1| serine-type D-Ala-D-Ala carboxypeptidase (dacC) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018600|gb|ACD71218.1| serine-type D-Ala-D-Ala carboxypeptidase [Treponema pallidum subsp.
           pallidum SS14]
 gi|291060158|gb|ADD72893.1| serine-type D-Ala-D-Ala carboxypeptidase [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 490

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 112/285 (39%), Gaps = 36/285 (12%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQ 94
           F ++   S    + A+   +  + +     +      D P  PASL K++T  ++ E L+
Sbjct: 84  FTNLSAGSTPPPISAR---AYAIAEGGSGTLLASFCADLPLPPASLAKLVTCAVVMEALE 140

Query: 95  SKKLHLNTQIPV----SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             +LH   +I V    S  A     S ++L+   Y +    +  +   S ND +      
Sbjct: 141 RGELHWQQRIRVPLAGSAQAFAPGSSLIFLRTGEYISVHDLLAGMNIASGNDAAYTLAYA 200

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           ++GS   F   M+   +K G+  T +   SGL  ++ +TTARD  +      + +P+   
Sbjct: 201 VAGSIPAFCTRMNTLVQKWGLTRTRFVEPSGLS-EHNVTTARDFVLFCCQYVRRWPENLA 259

Query: 211 YFSIRKFRYR-----------NRIITNHNKLL----------NKMHNIDGIKTGYTRNSG 249
            F  R +  R           +      N LL            +   DG+KTGY R SG
Sbjct: 260 RFHARSYFQRSNSPATSRIPPHTRFPATNTLLAATAARGNVSTAVPGCDGLKTGYIRESG 319

Query: 250 FNIVTSLRYKDDPIVAVVMGM------PTSQERDQKALELITSFL 288
           FN+  S    D  I+AV++G          + R +    L+    
Sbjct: 320 FNVALSSLRGDTRIIAVILGGAGNSIPEGKRIRARDGATLLYWAF 364


>gi|294788601|ref|ZP_06753843.1| D-alanyl-D-alanine carboxypeptidase family protein [Simonsiella
           muelleri ATCC 29453]
 gi|294483478|gb|EFG31163.1| D-alanyl-D-alanine carboxypeptidase family protein [Simonsiella
           muelleri ATCC 29453]
          Length = 292

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 60/255 (23%), Positives = 113/255 (44%), Gaps = 17/255 (6%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQS 95
            +    +    L+A+   S++V++ N  ++   K  D  R  AS++K+M+  ++ +    
Sbjct: 38  FAASSFAYTPLLNAR---SALVMNANTGKILYQKNVDTVRSIASISKLMSAMVLLDA--- 91

Query: 96  KKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
            KL++   I +++    +   +   L   T  T  + +   +  S N    A      G 
Sbjct: 92  -KLNMYEDITITEDEIDRLKGTGSRLSIGTTLTRGELLHLGLMSSENRAIHALARTYPGG 150

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS- 213
              F   M+ KA+ +GM  + +   +GL D   ++TARD +++     K +PQ     + 
Sbjct: 151 MGAFVAAMNAKAQSLGMNKSRFFEPTGL-DPRNVSTARDLSVMVRAASK-YPQIRSLTTS 208

Query: 214 ----IRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
               +     + +   N N L+     +I   KTGY + +G ++V   R  + P+V VV+
Sbjct: 209 NYGQVYTSAGKTQTYKNTNALVREGDWDISLQKTGYIKEAGRSMVLQARLGNQPVVIVVL 268

Query: 269 GMPTSQERDQKALEL 283
           G  TS  R + A EL
Sbjct: 269 GSSTSSSRVRDAREL 283


>gi|256380453|ref|YP_003104113.1| Serine-type D-Ala-D-Ala carboxypeptidase [Actinosynnema mirum DSM
           43827]
 gi|255924756|gb|ACU40267.1| Serine-type D-Ala-D-Ala carboxypeptidase [Actinosynnema mirum DSM
           43827]
          Length = 669

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 102/243 (41%), Gaps = 14/243 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + +V D++   +        R  PAS+ K++   +      +K+L L++Q+   +   
Sbjct: 83  AKTWLVADMDSGAVLAAYDPHGRQRPASVIKVLLAMVA-----AKELPLDSQMTAIEEDT 137

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            Q  + + LK    +T EQ + +L+  S NDV+ A    + G        M+  A ++G 
Sbjct: 138 EQECTCIGLKAGNTYTVEQLLQSLVMASGNDVANALARRLGGLPSA-IRKMNALATELGA 196

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITN 226
           ++T     SGL      T+A D A++     K +P + +  + ++  +       + + N
Sbjct: 197 RDTRAITPSGLDAPGTSTSAYDVALIFRAAMK-YPDFARAIATQRIEFPAEEGGTKPVIN 255

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK-ALELIT 285
            N+L+       G KTG+T ++    V +       +VAV++       R    A  L+ 
Sbjct: 256 DNRLMTSYAGALGGKTGFTDDAQHTYVGAAERDGRRLVAVLLRAQQQPLRTTDQAARLLD 315

Query: 286 SFL 288
              
Sbjct: 316 YGF 318


>gi|257064043|ref|YP_003143715.1| D-alanyl-D-alanine carboxypeptidase [Slackia heliotrinireducens DSM
           20476]
 gi|256791696|gb|ACV22366.1| D-alanyl-D-alanine carboxypeptidase [Slackia heliotrinireducens DSM
           20476]
          Length = 464

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 103/254 (40%), Gaps = 27/254 (10%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +IV+  +   +   +  D+    AS+TK+MT  +  E        LNT++ VSK +AT  
Sbjct: 80  AIVV-GDDGTVYYERNADQQHQIASITKIMTAIVALENAD-----LNTEVTVSKASATVG 133

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG--------SEKKFAILMSNKA 166
            S   LKE         ++ L+  S ND   A  E +           +  F   M+ KA
Sbjct: 134 ESSANLKEGDTMDLRTALMCLLIPSGNDAGIAIAETVGTIMDPSASDPQAVFVSAMNAKA 193

Query: 167 KKIGMQNTIYKNASGLHDK----NQITTARDQAILGILLR--KNFPQYYKY------FSI 214
           +++G  NT + N  GL       +  ++ARD   +         F +  +        + 
Sbjct: 194 EELGCTNTHFTNPHGLDADKWGSDMHSSARDVVTMARYAMSYDTFAEIVQMGDTTVTVTG 253

Query: 215 RKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           +  + R+  +   + LL +   + G+KTG +  + F     +   D+    VV+G  TS 
Sbjct: 254 KDNKARDNWLDATDDLLEEYEGMRGVKTGSSVLADFCFSGCVTRGDETFYTVVLGNATSD 313

Query: 275 ERDQKALELITSFL 288
           ER    + L+    
Sbjct: 314 ERFGDTITLMDWAF 327


>gi|188534373|ref|YP_001908170.1| D-alanyl-D-alanine endopeptidase [Erwinia tasmaniensis Et1/99]
 gi|188029415|emb|CAO97292.1| Penicillin-binding protein 7 (D-alanyl-D-alanine-endopeptidase)
           [Erwinia tasmaniensis Et1/99]
          Length = 316

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 59/251 (23%), Positives = 105/251 (41%), Gaps = 15/251 (5%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           ++   A    S++++D+N N++      D  R  AS+TK+MT+ +  +      L L+  
Sbjct: 36  SAAQPAIASGSAMIVDLNSNKVIYESHPDRVRPIASITKLMTVMVALDAH----LPLDEM 91

Query: 104 IPVS-KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           + V              ++  +  + +  +L  +  S N  + +      G    F   M
Sbjct: 92  LKVDVSHTPEMRGVYSRVRLNSEISRKNMMLLALMSSENRAAASLAHHYPGGYDAFIRAM 151

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FR 218
           + KA+ +GM +T Y   +GL  +N ++TARD + L +L  K +P   +  +  +    FR
Sbjct: 152 NAKARALGMSHTRYVEPTGLSIEN-VSTARDLSKL-LLATKRYPLIGQLSTTHEDMASFR 209

Query: 219 YRNRIIT--NHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
             N  +   N N L+ +   NI   KTGYT  +G  +V        P+  VV+       
Sbjct: 210 SPNYTLPFRNTNHLVYRPDWNIQLTKTGYTDEAGHCLVMRTVINQRPVSLVVLDAFGKYT 269

Query: 276 RDQKALELITS 286
               A  L   
Sbjct: 270 HFADANRLRQW 280


>gi|323968053|gb|EGB63463.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli M863]
          Length = 313

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 117/278 (42%), Gaps = 26/278 (9%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKY---------SSIVIDVNKNQMTGFKQDE-PRYP 77
           + L    L L++     A    A             S++++D+N N++      +  R  
Sbjct: 9   VSLFSLALMLAVPFAPQAVAKTAVATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPI 68

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           AS++K+MT  ++ +     +L L+ +  + +S+T          ++  +  + ++ +L  
Sbjct: 69  ASISKLMTAMVVLDA----RLPLDEKLKVDISQTP-EMKGVYSRVRLNSEISRKEMLLLA 123

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S N  + +      G  K F   M+ KAK +GM NT +   +GL   N ++TARD  
Sbjct: 124 LMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHN-VSTARDLT 182

Query: 196 ILGILLRKNFPQYYKYFSIRK--FRYRNRIIT----NHNKLLNKM-HNIDGIKTGYTRNS 248
            L ++  K +P   +  + R+    + N   T    N N L+ +   NI   KTG+T  +
Sbjct: 183 KL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAA 241

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           G  +V      + P+  VVM           A  L T 
Sbjct: 242 GHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 279


>gi|145219555|ref|YP_001130264.1| Serine-type D-Ala-D-Ala carboxypeptidase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205719|gb|ABP36762.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 311

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/283 (22%), Positives = 120/283 (42%), Gaps = 19/283 (6%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQDEPR- 75
           GS  ++R   +    + L   +   A    A       S I+ D+  +++   K  +   
Sbjct: 5   GSGRVKRMFSMTAVSVILLFSLFFRAGTADAAVPVLIDSYIIKDLGYSRVFMSKDSDRLI 64

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
            PASLTK++T  +  E  +     L+  + + + A    PSK   +          + A 
Sbjct: 65  RPASLTKILTCVLAIESGK-----LDQIVVIPREATLVEPSKAGFRTGDRIRLIDLVKAS 119

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD---KNQITTAR 192
           +  S+ND + A    +SGS K FA  M+ +A+ IGM+++ + N +G         ++TA 
Sbjct: 120 MVSSSNDAAFAIAMHLSGSVKGFAAAMNYRARAIGMKHSSFTNPAGFDTGEYSGNLSTAE 179

Query: 193 DQAILGILLRK--NFPQYYKYFS--IRKFRYRN-RIITNHNKLLNKMHNIDGIKTGYTRN 247
           D  +L     +  +F       S  + ++R     ++  HNKLL +     GIKTG+TR 
Sbjct: 180 DLLVLTEYAIRLPHFNDMAMLGSVIVPEYRTGKMFLLRTHNKLLARYPYAVGIKTGFTRR 239

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +G  ++   +     ++ V++      +R   A E+       
Sbjct: 240 AGKCLIARAQKNGRDMLLVMLNARG--DRWGIAEEMFEKAFST 280


>gi|146321721|ref|YP_001201432.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis 98HAH33]
 gi|145692527|gb|ABP93032.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis 98HAH33]
 gi|292559140|gb|ADE32141.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus suis GZ1]
          Length = 415

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 136/299 (45%), Gaps = 28/299 (9%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASL 80
           + +++ +  +  IL + +    + +E  +     +I ++V+  ++   +  E +   AS+
Sbjct: 1   MIMRKLLLTLTTILAVFLTSTPILAEDFSVAAKHAIAVEVSSGKILYEQDAETKASIASI 60

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALI 136
           +K +++Y+++E L   ++ L+T + +S    +       S + L E++Y +    + A +
Sbjct: 61  SKTLSIYLVYEALAKGEITLDTMVDISDYPYSLTSNTELSNVNLDERSY-SVRDLLNASL 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN---------- 186
             S+N    A  E I+GSE  F   M  K ++ G+ +T   N SGL + +          
Sbjct: 120 ITSSNSAIIALAEKIAGSEAAFVDRMKAKVQEWGITDTKIVNVSGLDNTDLGENIYPGSS 179

Query: 187 ----QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNID 238
                + +A D AI+   L  ++PQ     S+  + +      + N++L+        +D
Sbjct: 180 PEDVNMFSALDVAIIARRLILDYPQVLDITSLNAYDFGGYTYYSTNQMLSDGTHARGGVD 239

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVM----GMPTSQERDQKALELITSFLEKKTL 293
           G+KTG + ++G + + + +     I+ VV+    G+ + + R     +L+       +L
Sbjct: 240 GLKTGTSNSAGSSFLATTQQAGMRIITVVLNANDGLTSPENRFVATNDLMNYVYSNFSL 298


>gi|228926407|ref|ZP_04089479.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229120916|ref|ZP_04250158.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
 gi|228662576|gb|EEL18174.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
 gi|228833231|gb|EEM78796.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 407

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/282 (24%), Positives = 120/282 (42%), Gaps = 21/282 (7%)

Query: 59  IDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 34  IDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 88

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ 
Sbjct: 89  YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSH 148

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  + ++        T    N +   
Sbjct: 149 FVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYF 207

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I+ VVM     +  E  ++  +       
Sbjct: 208 EN-PFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMADYSFGQFV 266

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
           K+T+      HQ+T   +    + L+KS  +   K      K
Sbjct: 267 KQTVLDKHSWHQKTTYLNKDIDSELEKSAELMLKKDEGKNVK 308


>gi|227486995|ref|ZP_03917311.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227093069|gb|EEI28381.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 402

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 112/263 (42%), Gaps = 14/263 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
            +S +V D++   +   K    RY PAS+ K++   +  +     +L L   + V+  ++
Sbjct: 97  AHSFLVFDLDTGDIYAAKDPHGRYRPASIIKVLLASVAID-----RLSLTDSMEVTAESS 151

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            Q  S   +     +T +  +  L+  S ND + A  + + G E+    +++ +A  +G 
Sbjct: 152 DQEGSSAGIGPGGRYTVDDLLHGLLMASGNDTAHAIAQLLGGDEEA-LRMVNARALDLGS 210

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI------IT 225
            +T   + SGL      T+A D A+         P + +     K+ +          + 
Sbjct: 211 TDTRVASYSGLDSAGMQTSAYDMALFFTDAWSK-PTFREILGTEKYDFPGFKDNPGFEMW 269

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N N++L    N  G KTG+T ++    V ++ +K   + AV++    S++R  +  E + 
Sbjct: 270 NDNRMLFVNENALGGKTGFTDDARHTYVGAMNHKGHRLAAVILDAEASKKRAWEMAEELI 329

Query: 286 SFLEKKTLKHQQTHRKDNLSSTS 308
              + +T+    T  ++  S   
Sbjct: 330 EATDPETMTPVGTLTQEKPSEQP 352


>gi|266623051|ref|ZP_06115986.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
 gi|288865192|gb|EFC97490.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
          Length = 309

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/255 (25%), Positives = 109/255 (42%), Gaps = 25/255 (9%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQS 95
           L ++     S   A    ++ V D++   +   K   E  YPAS+TK MT  +  +Y   
Sbjct: 57  LCVVTADTPSSDQAVTAEAAAVFDLSDKTVIFGKNPFEKLYPASITKTMTALLAIKYG-- 114

Query: 96  KKLHLNTQIPVSKTAA-TQNPSKL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
              +L+ ++ V + A  T++ + L  +K     T EQ +  L+  S ND   A    + G
Sbjct: 115 ---NLSDEVTVPEEAVITESGATLCGIKPGDKLTMEQLLYGLMLPSGNDAGAAIAVHMDG 171

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S +KFA  M+ +A+K+G   T + N  GL+D+N  TTA D  ++     K +P + K   
Sbjct: 172 SIEKFADRMNEEARKLGATGTHFVNPHGLNDENHYTTAYDLYLIFNEAMK-YPDFRKVIG 230

Query: 214 IRKFR---------YRNRIITNHNKLLNKMHNI------DGIKTGYTRNSGFNIV-TSLR 257
              +             +     N  +    N+       G KTG TR +G  ++  S  
Sbjct: 231 TSSYDAVYALASGETTTKTWKQSNWYMTGERNMPEGLTALGGKTGTTRAAGSCLIMASSG 290

Query: 258 YKDDPIVAVVMGMPT 272
                 ++VV+  P 
Sbjct: 291 SSGMEYISVVLKAPD 305


>gi|16802003|ref|NP_472271.1| hypothetical protein lin2944 [Listeria innocua Clip11262]
 gi|16415485|emb|CAC98169.1| lin2944 [Listeria innocua Clip11262]
          Length = 272

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 114/242 (47%), Gaps = 7/242 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++ V      +    K  +   P ASLTK+MT +++ E + +KKL  + ++ + +   
Sbjct: 31  ANAAAVYSTENGKAFYEKNADKVMPIASLTKLMTAFLVLEAVDNKKLSWDEELDLIRLDD 90

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S   + +K  ++      A++  SAND +   G  +   +  F   M+N+AKK+G+
Sbjct: 91  PSAVSLYAITQKRTWSVRDLYSAMLVMSANDAAETLGNRL--DDANFPQKMNNEAKKLGL 148

Query: 172 QN-TIYKNASGLHDKNQI--TTARDQAILGILLRKNFPQYYKYFSIRK-FRYRNRIITNH 227
            N T + +ASGL    ++  +T +D  +L   L    P+  +  S           + + 
Sbjct: 149 SNKTKFVSASGLDVDGKMAVSTTKDLFLLSSKLISTHPEVLETTSKSSIITEEGATLEST 208

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           N  +  +  +DG+KTG+T  +G+  + + +     ++++V+   T+++R +   +L+   
Sbjct: 209 NDSIGSIQGLDGLKTGFTDEAGYCFIGTAKRDGKRVISIVLDADTAEKRFKDTEKLMGIG 268

Query: 288 LE 289
            +
Sbjct: 269 FK 270


>gi|254830752|ref|ZP_05235407.1| hypothetical protein Lmon1_05309 [Listeria monocytogenes 10403S]
          Length = 272

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 117/243 (48%), Gaps = 7/243 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++ V  V   +    +  +   P ASL+K+MT +++ E + + +L  + ++ + +   
Sbjct: 31  ANAAAVYSVENGKPLYEQNADKVMPIASLSKLMTAFLVLEAVDNNELSWDEKLNLVRLDD 90

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S   + +K  ++      A++T SAND +   G+ + G    F   M+N+AKK GM
Sbjct: 91  PSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLGDRLDG--ADFPKEMNNQAKKSGM 148

Query: 172 QN-TIYKNASGLHDKNQ--ITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNH 227
            + T + +ASGL    +  ++T +D  +L   L    P+  +  S       +   + + 
Sbjct: 149 SSKTTFVSASGLDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDKGAKLEST 208

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           N LL  +  +DG+KTG+T  +G+  + +       ++++V+   T+++R +   +L+   
Sbjct: 209 NDLLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVG 268

Query: 288 LEK 290
            ++
Sbjct: 269 FKE 271


>gi|324006491|gb|EGB75710.1| beta-lactamase [Escherichia coli MS 57-2]
          Length = 313

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 107/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAA 111
           S++++D+N N++      +  R  AS++K+MT  ++ +     +L L+ +  + +S+T  
Sbjct: 45  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDA----RLPLDEKLKVDISQTP- 99

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +      G  K F   M+ KAK +GM
Sbjct: 100 EMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGM 159

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT-- 225
            NT +   +GL   N ++TARD   L ++  K +P   +  + R+    F      +   
Sbjct: 160 NNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFTNPTYTLPFR 217

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L 
Sbjct: 218 NTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLR 277

Query: 285 TS 286
           T 
Sbjct: 278 TW 279


>gi|296501957|ref|YP_003663657.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
 gi|296323009|gb|ADH05937.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
          Length = 428

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 69/284 (24%), Positives = 121/284 (42%), Gaps = 21/284 (7%)

Query: 59  IDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K      YPAS TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 55  IDAKTGDVLYDKNAYHRAYPASTTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 109

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ KAK++G +++ 
Sbjct: 110 YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSH 169

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  + ++        T    N +   
Sbjct: 170 FVTPNGLHDPNHYTTPYDMAMITKGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSNFF 228

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I++VVM     +  E  ++  E       
Sbjct: 229 EN-PYSIGGKTGFTNEARNTLVLLNEKDGNRIISVVMASQRPEIYEDLKQMAEYSFGQFT 287

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           K+ +      HQ+T   +   ++ L++S  +   K      K I
Sbjct: 288 KQMVLDKHNWHQKTTYLNKDVNSELEQSAELMLKKDEGKNVKTI 331


>gi|302024467|ref|ZP_07249678.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis 05HAS68]
          Length = 402

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 61/325 (18%), Positives = 138/325 (42%), Gaps = 33/325 (10%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEY 92
           +L+       +A +     K+ +I ++V+  ++   +  E +   AS++K +++Y+++E 
Sbjct: 1   MLYFFTSTPILAEDFSVAAKH-AIAVEVSSGKILYEQDAETKASIASISKTLSIYLVYEA 59

Query: 93  LQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           L   ++ L+T + +S    +       S + L  ++Y +    + A +  S+N    A  
Sbjct: 60  LAKGEITLDTMVDISDYPYSLTSNTELSNVNLDARSY-SVRDLLNASLITSSNSAIIALA 118

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------------QITTARDQ 194
           E I+GSE  F   M  K ++ G+ +T   N SGL + +               + +A D 
Sbjct: 119 EKIAGSEAAFVDRMKAKVQEWGITDTKIVNVSGLDNTDLGENIYPGSSPEDVNMFSALDV 178

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTGYTRNSGF 250
           AI+   L  ++PQ     S+  + +      + N++L+        +DG+KTG + ++G 
Sbjct: 179 AIIARRLILDYPQVLDITSLNAYDFGGYTYYSTNQMLSDGTHARGGVDGLKTGTSNSAGS 238

Query: 251 NIVTSLRYKDDPIVAVVM----GMPTSQERDQKALELITSFLEKKTL----KHQQTHRKD 302
           + + + +     I+ VV+    G+ + + R     +L+       +L    K  +     
Sbjct: 239 SFLATTQQAGMRIITVVLNANDGLTSPENRFVATNDLMNYVYSNFSLVTLVKKGEAFEDS 298

Query: 303 NLSSTSLKKSLMIKKLKRTYSQFKK 327
            +   + +K           +  ++
Sbjct: 299 KIKVFNGEKETSPVVAAADLTVVQR 323


>gi|333002850|gb|EGK22406.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri K-272]
 gi|333016854|gb|EGK36178.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri K-227]
          Length = 311

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 108/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAA 111
           S++++D+N N++      +  R  AS++K+MT  ++ +     +L L+ +  + +S+T  
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDA----RLPLDEKLKVDISQTP- 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +      G  K F   M+ KAK +GM
Sbjct: 97  EMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGM 156

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIIT---- 225
            NT +   +GL   N ++TARD   L ++  K +P   +  + R+    + N   T    
Sbjct: 157 NNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFR 214

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L 
Sbjct: 215 NTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLR 274

Query: 285 TS 286
           T 
Sbjct: 275 TW 276


>gi|253752532|ref|YP_003025673.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis SC84]
 gi|253754358|ref|YP_003027499.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis P1/7]
 gi|251816821|emb|CAZ52465.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus suis
           SC84]
 gi|251820604|emb|CAR47361.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus suis
           P1/7]
 gi|319758942|gb|ADV70884.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis JS14]
          Length = 413

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/284 (20%), Positives = 128/284 (45%), Gaps = 28/284 (9%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQS 95
           + +    + +E  +     +I ++V+  ++   +  E +   AS++K +++Y+++E L  
Sbjct: 14  VFLTSTPILAEDFSVAAKHAIAVEVSSGKILYEQDAETKASIASISKTLSIYLVYEALAK 73

Query: 96  KKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            ++ L+T + +S    +       S + L E++Y +    + A +  S+N    A  E I
Sbjct: 74  GEITLDTMVDISDYPYSLTSNTELSNVNLDERSY-SVRDLLNASLITSSNSAIIALAEKI 132

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------------QITTARDQAIL 197
           +GSE  F   M  K ++ G+ +T   N SGL + +               + +A D AI+
Sbjct: 133 AGSEAAFVDRMKAKVQEWGITDTKIVNVSGLDNTDLGENIYPGSSPEDVNMFSALDVAII 192

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTGYTRNSGFNIV 253
              L  ++PQ     S+  + +      + N++L+        +DG+KTG + ++G + +
Sbjct: 193 ARRLILDYPQVLDITSLNAYDFGGYTYYSTNQMLSDGTHARGGVDGLKTGTSNSAGSSFL 252

Query: 254 TSLRYKDDPIVAVVM----GMPTSQERDQKALELITSFLEKKTL 293
            + +     I+ VV+    G+ + + R     +L+       +L
Sbjct: 253 ATTQQAGMRIITVVLNANDGLTSPENRFVATNDLMNYVYSNFSL 296


>gi|170686750|ref|ZP_02877970.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0465]
 gi|254682564|ref|ZP_05146425.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|170669273|gb|EDT20016.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0465]
          Length = 428

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 69/282 (24%), Positives = 121/282 (42%), Gaps = 21/282 (7%)

Query: 59  IDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           IDV    +   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 55  IDVKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 109

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ 
Sbjct: 110 YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSH 169

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  + ++        T    N +   
Sbjct: 170 FVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYF 228

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I+ VVM     +  E  ++  +       
Sbjct: 229 EN-PFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMADYSFGQFV 287

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
           K+T+      HQ+T   +    + L+KS  +   K      K
Sbjct: 288 KQTVLDKHSWHQKTTYLNKDIDSELEKSAELMLKKDEVKNVK 329


>gi|124267287|ref|YP_001021291.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylibium
           petroleiphilum PM1]
 gi|124260062|gb|ABM95056.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylibium
           petroleiphilum PM1]
          Length = 344

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 13/234 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++V+D + +++   K  +   P ASLTK+MT  ++ E  Q     L+  + +S+      
Sbjct: 90  ALVMDQDTHEVLIDKNAQAVLPIASLTKLMTSVVVVEAGQ----SLDEMLTISQDDVDTE 145

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   L   T  T  + +   +  S N  + A G    G    F   M+ +A  +GM +
Sbjct: 146 KGSGSRLAVGTQLTRGEMLHLALMSSENRAAHALGRHYPGGLVAFVSAMNARASLLGMTD 205

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T Y   +GL  +NQ ++ARD A L     +  P   +  + +++      R     N N 
Sbjct: 206 TRYVEPTGLSSRNQ-SSARDLAALVSAAYQ-HPLIRELSTSQEYSVAVGRRTLQYRNTNG 263

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           L+ N   +I   KTGY   +G  +V   +     ++ V +       R   A  
Sbjct: 264 LVRNPAWDIGLQKTGYISEAGRCLVMQAQLAGRKLIMVFLDSAGKYSRQGDAER 317


>gi|154710434|gb|ABS84279.1| DacC [Treponema paraluiscuniculi]
          Length = 490

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/279 (23%), Positives = 108/279 (38%), Gaps = 33/279 (11%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +S  S        +  + +     +      D P  PASL K++T  ++ E L+  +LH 
Sbjct: 87  LSAGSTPPPISARAYAIAEGGSGTLLASFCADLPLPPASLAKLVTCAVVMEALERGELHW 146

Query: 101 NTQIPV----SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
             +I V    S  A     S ++L+   Y +    +  +   S ND +      ++GS  
Sbjct: 147 QQRIRVPLAGSAQAFAPGSSLIFLRTGEYISVHDLLAGMNIVSGNDAAYTLAYAVAGSIP 206

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F   M+   +K G+  T +   SGL  ++ +TTARD  +      + +P+    F  R 
Sbjct: 207 AFCTRMNTLVQKWGLTRTRFVEPSGLS-EHNVTTARDFVLFCCQYVRRWPENLARFHARS 265

Query: 217 FRYR-----------NRIITNHNKLL----------NKMHNIDGIKTGYTRNSGFNIVTS 255
           +  R           +      N LL            +   DG+KTGY R SGFN+  S
Sbjct: 266 YFQRSNSPATSRIPPHTRFPATNTLLAATAARGNVSTAVPGCDGLKTGYIRESGFNVALS 325

Query: 256 LRYKDDPIVAVVMGM------PTSQERDQKALELITSFL 288
               D  I+AV++G          + R +    L+    
Sbjct: 326 SLRGDTRIIAVILGGAGNSIPEGKRIRARDGATLLYWAF 364


>gi|47095619|ref|ZP_00233227.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria
           monocytogenes str. 1/2a F6854]
 gi|254899730|ref|ZP_05259654.1| hypothetical protein LmonJ_07951 [Listeria monocytogenes J0161]
 gi|254913067|ref|ZP_05263079.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254937448|ref|ZP_05269145.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|47016049|gb|EAL06974.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria
           monocytogenes str. 1/2a F6854]
 gi|258610050|gb|EEW22658.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|293591068|gb|EFF99402.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 272

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 118/243 (48%), Gaps = 7/243 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++ V  V   +    K+ D+    ASLTK+MT +++ E + + +L  + ++ + +   
Sbjct: 31  ANAAAVYSVENGEALYEKKTDKVMPIASLTKLMTAFLVLEAVDNNELSWDERLNLVRLDD 90

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S   + +K  ++      A++T SAND +   G+ + G    F   M+N+AKK+GM
Sbjct: 91  PSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLGDRLDG--ADFPKEMNNQAKKLGM 148

Query: 172 QN-TIYKNASGLHDKNQ--ITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNH 227
            + T + +ASGL    +  ++T +D  +L   L    P+  +  S       +   + + 
Sbjct: 149 SSKTTFVSASGLDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDKGAKLEST 208

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           N  L  +  +DG+KTG+T  +G+  + +       ++++V+   T+++R +   +L+   
Sbjct: 209 NDSLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVG 268

Query: 288 LEK 290
            ++
Sbjct: 269 FKE 271


>gi|288554201|ref|YP_003426136.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudofirmus OF4]
 gi|288545361|gb|ADC49244.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudofirmus OF4]
          Length = 547

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 72/256 (28%), Positives = 113/256 (44%), Gaps = 31/256 (12%)

Query: 56  SIVIDVNKNQMTGFKQDEP---------RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
           SI I  +   +    QD P          YPAS  K+MT  +  E     K +L+ ++ V
Sbjct: 119 SIPIGAHAGAVLESGQDRPSFTKNANAALYPASTVKVMTALLAIE-----KGNLSDRVVV 173

Query: 107 SKTAATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
              AAT   + SK  ++     T EQ +  L+  S ND + A  E I GS  +F  +M+ 
Sbjct: 174 GPGAATVPFDSSKAGVRPGDVMTLEQLLHGLMLPSGNDAAVAIAEHIGGSHWQFVQMMNQ 233

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF--RYRNR 222
           +A+++G  NT + NA G    +Q TT  D A +G    K  P++ K  S   +   YRNR
Sbjct: 234 RARELGATNTTFMNAHGYDHPSQKTTVSDLAKIGAEASK-HPEFLKLISTPTYATTYRNR 292

Query: 223 -------IITNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
                  +  N N++L     +  +I G KTGYT  S  N+++           V++   
Sbjct: 293 AGSPVHKVWRNTNQMLHNQAYRHSSIIGGKTGYTSVSRHNLISFAEAGGSTYTTVILRGE 352

Query: 272 TSQERDQKALELITSF 287
            +Q R      +++  
Sbjct: 353 RTQ-RYYDTTNMLSRA 367


>gi|86739377|ref|YP_479777.1| Serine-type D-Ala-D-Ala carboxypeptidase [Frankia sp. CcI3]
 gi|86566239|gb|ABD10048.1| Serine-type D-Ala-D-Ala carboxypeptidase [Frankia sp. CcI3]
          Length = 551

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 93/239 (38%), Gaps = 15/239 (6%)

Query: 56  SIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
            +V D     +    +   +  PAS  K++T   +        L  +  + V + A   +
Sbjct: 106 WLVADAGSGAILAAYRPHAQDLPASTMKILTALTVL----PG-LPPDRVVTVDENAPRVD 160

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            +K+ L     +T      A++  S ND + A  +  SG        M+  A+ +G  +T
Sbjct: 161 GTKVGLVPGVGYTVRDLATAMLISSGNDATMALVQA-SGGTPAVLQRMNALARSLGATDT 219

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNK 229
           +  + +GL    Q+T+  D A+LG     N P    Y +I +     R      I NHN 
Sbjct: 220 VAGDPTGLDSPGQVTSVHDLAVLGRAALDN-PTVRGYLTIPRASLAGRGSTRFEIQNHNA 278

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           LL       G+K GYT  +G   V +       ++  ++   T+    + A  L+    
Sbjct: 279 LLRSYEGTIGVKNGYTIAAGATFVGAATRGGHTLIVALL--RTAPAYGKDARALLDWGF 335


>gi|312973616|ref|ZP_07787788.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 1827-70]
 gi|310332211|gb|EFP99446.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 1827-70]
 gi|323176971|gb|EFZ62561.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 1180]
          Length = 311

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 117/278 (42%), Gaps = 26/278 (9%)

Query: 28  IQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQDE-PRYP 77
           + L    L L++ +   A    A             S++++D+N N++      +  R  
Sbjct: 6   VSLFSLALMLAVPLAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPI 65

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           AS++K+MT  ++ +     +L L+ +  + +S+T          ++  +  + +  +L  
Sbjct: 66  ASISKLMTAMVVLDA----RLPLDEKLKVDISQTP-EMKGVYSRVRLNSEISRKDMLLLA 120

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S N  + +      G  K F   M+ KAK +GM NT +   +GL   N ++TARD  
Sbjct: 121 LMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHN-VSTARDLT 179

Query: 196 ILGILLRKNFPQYYKYFSIRK--FRYRNRIIT----NHNKLLNKM-HNIDGIKTGYTRNS 248
            L ++  K +P   +  + R+    + N   T    N N L+ +   NI   KTG+T  +
Sbjct: 180 KL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAA 238

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           G  +V      + P+  VVM           A  L T 
Sbjct: 239 GHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276


>gi|303235381|ref|ZP_07321998.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
           BVS033A4]
 gi|302493502|gb|EFL53291.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
           BVS033A4]
          Length = 394

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 75/310 (24%), Positives = 142/310 (45%), Gaps = 19/310 (6%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY-----SSIVIDVN-KNQMTGFKQDEPRYP 77
           I++ I LM   L L+I+     S+  +K  +     +   I+ +   ++  + +++P   
Sbjct: 4   IKKIIPLM---LVLAIVFQPALSKADSKLGFEDKVKAYYTIEQDYSQELLNYNENKPLAI 60

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT  ++ E + + K  L+ +I +    A    S + LK+    T    I  ++ 
Sbjct: 61  ASLTKIMTYVLVMEDINANKYKLDDKIKIQTQYAKPEASTMQLKKGEELTVNDLIRGMMI 120

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKNQITTARDQA 195
            S ND +        GS  KF   M+ KA ++ +++  + +ASG    DK  + +A+D A
Sbjct: 121 VSGNDAADELAVKSEGSVGKFVERMNKKAAELELESAKFYSASGYPENDKENLMSAKDLA 180

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIIT--NHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            L      N+PQ   Y   +K    +R          L K+  +DG KTG T  +G+ ++
Sbjct: 181 KLTTYTINNYPQVLNYTKTQKLVMPSRKYEAATTVPFLGKIEGVDGFKTGTTEKAGYCLI 240

Query: 254 TSLRYK----DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSL 309
           T++  K     + +V+V+MG PT  +R+     ++     + + +       +    T  
Sbjct: 241 TTMSLKPNNPKNKVVSVLMGAPTKYDRNTYQKIMLEYV--RNSFEPMNILNSEKPIETKS 298

Query: 310 KKSLMIKKLK 319
             S++ KK++
Sbjct: 299 VDSVVDKKVE 308


>gi|296268658|ref|YP_003651290.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thermobispora
           bispora DSM 43833]
 gi|296091445|gb|ADG87397.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thermobispora
           bispora DSM 43833]
          Length = 388

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/241 (23%), Positives = 101/241 (41%), Gaps = 14/241 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + +V D +   +   K     Y PAS  K +T   +   L  K++     +  S  A 
Sbjct: 67  AAAYLVADADTGDVLAAKDPHGHYRPASTLKALTAITLIPKLDKKRV-----VRPSPEAC 121

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            +  S + L  K  +T E    AL+  S ND + A  E   G  K  A + +  A+++  
Sbjct: 122 NEEGSAVGLVPKPIYTVEDLFRALLMVSGNDAANALAEANGGMRKTLAEM-NQVARRLQA 180

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNH 227
            +T+ K  SGL    Q ++A D A++        P + +Y S +  ++     +  I NH
Sbjct: 181 YDTVAKTPSGLDRPGQRSSAYDLALIARAGLAM-PDFRRYVSTKVAKFPAPKGHYEIANH 239

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           N+LL +   + G+K G+T  +  + V +       I+ V+M  P       +  +L+   
Sbjct: 240 NRLLGRYQGMIGVKNGWTSKALGSFVGAATRNGHTIIVVIMRHPGWF--WDEVADLLDWG 297

Query: 288 L 288
            
Sbjct: 298 F 298


>gi|258622600|ref|ZP_05717622.1| D-alanyl-D-alanine endopeptidase [Vibrio mimicus VM573]
 gi|258585300|gb|EEW10027.1| D-alanyl-D-alanine endopeptidase [Vibrio mimicus VM573]
          Length = 317

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 119/289 (41%), Gaps = 34/289 (11%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAK-------------------PKYSSIVIDVNKNQM 66
           + + L+G +  +   ++  A    A                       S++VID+  N++
Sbjct: 2   KKLSLLGSVFLVCSSLLIAAPAHSADSATATPKATVKKTVKKQELAANSALVIDLKTNEV 61

Query: 67  TGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAATQNPSKLYLKEKT 124
                 D  R  AS+TK+MT  +  +     KL ++T++P++ K A         ++  +
Sbjct: 62  IYSSNPDAVRPIASVTKLMTAIVTLDA----KLPMDTKLPITIKEAKEMKGIHSRVRIGS 117

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
             + +  +L  +  S N  + +      G  K F   M+NKAK +GM+NT +   +GL +
Sbjct: 118 EISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNNKAKALGMKNTRFVEPTGLSE 177

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------NRIITNHNKLL-NKMHNI 237
           KN +++ARD  +L     K +P   +  +  K          +    N N+L+ N    I
Sbjct: 178 KN-VSSARDLVLLLKA-SKKYPMLGQLSATEKKTVTFAKPRYSLDFRNTNRLVFNDNWKI 235

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           D  KTG+T  +G  +V   +     +  VV+           A  L T 
Sbjct: 236 DLTKTGFTNAAGHCLVMRTQMGKRQVAFVVLDTKGKLSPVGDANRLRTW 284


>gi|228913946|ref|ZP_04077571.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228944975|ref|ZP_04107336.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228814644|gb|EEM60904.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228845885|gb|EEM90911.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 407

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 69/282 (24%), Positives = 120/282 (42%), Gaps = 21/282 (7%)

Query: 59  IDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 34  IDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 88

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ 
Sbjct: 89  YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSH 148

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  + ++        T    N +   
Sbjct: 149 FVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYF 207

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + IV VVM     +  E  ++  +       
Sbjct: 208 EN-PYSIGGKTGFTNEARNTLVLLNEKDGNRIVNVVMASQRPEIYEDLKQMADYSFGQFV 266

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
           K+T+      HQ+T   +    + L+KS  +   K      K
Sbjct: 267 KQTVLDKHSWHQKTTYLNKDIDSELEKSAELMLKKDEGKNVK 308


>gi|325124211|gb|ADY83734.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 335

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 115/263 (43%), Gaps = 18/263 (6%)

Query: 39  IIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           I  I   S  +A+P  S+   +V+D    ++   K  +     AS+TK+MT  +  +   
Sbjct: 74  IAPIRDTSGYNAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKVMTAVVTADA-- 131

Query: 95  SKKLHLNTQIPVSKTAATQNP---SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
             +L+++ +I + +          S   L+        + +L  + +S N  + A     
Sbjct: 132 --RLNMSEEITLEQIDFAGAGGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTY 189

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            G    F   M+ KA+ +GM +T Y  ++GL D   +++ARD  IL     + +    ++
Sbjct: 190 PGGRPAFVAAMNAKARALGMSSTHYYESTGL-DPRNVSSARDLGILVSTASQ-YGLIRQF 247

Query: 212 FSIRKFRYR--NRII--TNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
            +   + +    R++   N N L+ N   NI+  KTGY   +G  +V        P V V
Sbjct: 248 STTPTYDFNLGYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIV 307

Query: 267 VMGMPTSQERDQKALELITSFLE 289
           ++G P++Q R+  A  L+     
Sbjct: 308 LLGEPSTQARNNDATNLLGWLSN 330


>gi|294790789|ref|ZP_06755947.1| serine-type D-Ala-D-Ala carboxypeptidase [Scardovia inopinata
           F0304]
 gi|294458686|gb|EFG27039.1| serine-type D-Ala-D-Ala carboxypeptidase [Scardovia inopinata
           F0304]
          Length = 466

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/288 (19%), Positives = 123/288 (42%), Gaps = 32/288 (11%)

Query: 56  SIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +  +D    ++   +  D P   AS+TK++TLY++++ +   K+  +T++P+S  ++  +
Sbjct: 36  AFAMDYATGRILLNQYGDRPAGIASMTKVITLYLVYKAIDQGKISWSTKVPISSYSSRIS 95

Query: 115 ----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                + + +K+K+Y T    + A   +SAN  + +  E I+GSE +F  +M  + ++ G
Sbjct: 96  TNWLTTTVPMKKKSY-TVRDLVTAAFVKSANSAAISLAEKIAGSEPRFVDMMRKQVRQWG 154

Query: 171 MQNTIYKNASGLHD--------------KNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
           + +    N+SGL++                 + +ARD A+       ++PQ     S   
Sbjct: 155 ITDAKLYNSSGLNNSFLDKNIYPGSSKKAENMMSARDIALAVWHFIHDYPQVLSMTSKAH 214

Query: 217 FRYRNRIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP- 271
             +    +T+ + +L         +DG KTG T  +G     +       ++ V+     
Sbjct: 215 ATFDGMPLTSTDHMLPGLNSAYPGLDGFKTGTTEIAGACFAATAVRHGMRVITVIQHASH 274

Query: 272 ---TSQERDQKALELITSFLEKK----TLKHQQTHRKDNLSSTSLKKS 312
                + R Q   +L+            ++  ++ +  +L     KK 
Sbjct: 275 ADGNEEARFQAMKKLLDYCFTAYGLVVVVRKGKSFKGSSLPLVDGKKK 322


>gi|89108951|ref|AP_002731.1| D-alanyl-D-alanine endopeptidase [Escherichia coli str. K-12
           substr. W3110]
 gi|162135905|ref|NP_416638.4| D-alanyl-D-alanine endopeptidase [Escherichia coli str. K-12
           substr. MG1655]
 gi|170081757|ref|YP_001731077.1| D-alanyl-D-alanine endopeptidase [Escherichia coli str. K-12
           substr. DH10B]
 gi|218549549|ref|YP_002383340.1| D-alanyl-D-alanine endopeptidase [Escherichia fergusonii ATCC
           35469]
 gi|218690282|ref|YP_002398494.1| D-alanyl-D-alanine endopeptidase [Escherichia coli ED1a]
 gi|238901318|ref|YP_002927114.1| D-alanyl-D-alanine endopeptidase [Escherichia coli BW2952]
 gi|254162149|ref|YP_003045257.1| D-alanyl-D-alanine endopeptidase [Escherichia coli B str. REL606]
 gi|256017698|ref|ZP_05431563.1| D-alanyl-D-alanine endopeptidase [Shigella sp. D9]
 gi|256022181|ref|ZP_05436046.1| D-alanyl-D-alanine endopeptidase [Escherichia sp. 4_1_40B]
 gi|297518989|ref|ZP_06937375.1| D-alanyl-D-alanine endopeptidase [Escherichia coli OP50]
 gi|306814750|ref|ZP_07448912.1| D-alanyl-D-alanine endopeptidase [Escherichia coli NC101]
 gi|307138792|ref|ZP_07498148.1| D-alanyl-D-alanine endopeptidase [Escherichia coli H736]
 gi|309788012|ref|ZP_07682621.1| D-alanyl-D-alanine endopeptidase [Shigella dysenteriae 1617]
 gi|161788972|sp|P0AFI5|PBP7_ECOLI RecName: Full=D-alanyl-D-alanine endopeptidase;
           Short=DD-endopeptidase; AltName: Full=Penicillin-binding
           protein 7; Short=PBP-7; Flags: Precursor
 gi|161788973|sp|P0AFI6|PBP7_SHIFL RecName: Full=D-alanyl-D-alanine endopeptidase;
           Short=DD-endopeptidase; AltName: Full=Penicillin-binding
           protein 7; Short=PBP-7; Flags: Precursor
 gi|24052567|gb|AAN43742.1| penicillin-binding protein 7 [Shigella flexneri 2a str. 301]
 gi|30041834|gb|AAP17561.1| penicillin-binding protein 7 [Shigella flexneri 2a str. 2457T]
 gi|85675248|dbj|BAE76611.1| D-alanyl-D-alanine endopeptidase [Escherichia coli str. K12 substr.
           W3110]
 gi|87082054|gb|AAC75195.2| D-alanyl-D-alanine endopeptidase [Escherichia coli str. K-12
           substr. MG1655]
 gi|169889592|gb|ACB03299.1| D-alanyl-D-alanine endopeptidase [Escherichia coli str. K-12
           substr. DH10B]
 gi|218357090|emb|CAQ89723.1| D-alanyl-D-alanine endopeptidase [Escherichia fergusonii ATCC
           35469]
 gi|218427846|emb|CAR08759.2| D-alanyl-D-alanine endopeptidase [Escherichia coli ED1a]
 gi|222033896|emb|CAP76637.1| Penicillin-binding protein 7 [Escherichia coli LF82]
 gi|238860732|gb|ACR62730.1| D-alanyl-D-alanine endopeptidase [Escherichia coli BW2952]
 gi|242377776|emb|CAQ32539.1| penicillin-binding protein 7 [Escherichia coli BL21(DE3)]
 gi|253974050|gb|ACT39721.1| D-alanyl-D-alanine endopeptidase [Escherichia coli B str. REL606]
 gi|253978218|gb|ACT43888.1| D-alanyl-D-alanine endopeptidase [Escherichia coli BL21(DE3)]
 gi|281179227|dbj|BAI55557.1| penicillin-binding protein 7 [Escherichia coli SE15]
 gi|305852144|gb|EFM52596.1| D-alanyl-D-alanine endopeptidase [Escherichia coli NC101]
 gi|308924146|gb|EFP69644.1| D-alanyl-D-alanine endopeptidase [Shigella dysenteriae 1617]
 gi|309702448|emb|CBJ01774.1| penicillin-binding protein 7 [Escherichia coli ETEC H10407]
 gi|312946753|gb|ADR27580.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O83:H1 str. NRG
           857C]
 gi|323171786|gb|EFZ57430.1| D-alanyl-D-alanine endopeptidase [Escherichia coli LT-68]
 gi|323187854|gb|EFZ73150.1| D-alanyl-D-alanine endopeptidase [Escherichia coli RN587/1]
 gi|332343912|gb|AEE57246.1| D-alanyl-D-alanine endopeptidase [Escherichia coli UMNK88]
 gi|333001268|gb|EGK20836.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri VA-6]
 gi|333001918|gb|EGK21484.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri K-218]
          Length = 310

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 108/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAA 111
           S++++D+N N++      +  R  AS++K+MT  ++ +     +L L+ +  + +S+T  
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDA----RLPLDEKLKVDISQTP- 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +      G  K F   M+ KAK +GM
Sbjct: 97  EMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGM 156

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIIT---- 225
            NT +   +GL   N ++TARD   L ++  K +P   +  + R+    + N   T    
Sbjct: 157 NNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFR 214

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L 
Sbjct: 215 NTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLR 274

Query: 285 TS 286
           T 
Sbjct: 275 TW 276


>gi|260844741|ref|YP_003222519.1| D-alanyl-D-alanine endopeptidase PbpG [Escherichia coli O103:H2
           str. 12009]
 gi|257759888|dbj|BAI31385.1| D-alanyl-D-alanine endopeptidase PbpG [Escherichia coli O103:H2
           str. 12009]
          Length = 310

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 117/278 (42%), Gaps = 26/278 (9%)

Query: 28  IQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQDE-PRYP 77
           + L    L L++ +   A    A             S++++D+N N++      +  R  
Sbjct: 6   VSLFSLALMLAVPLAPQAVAKTAAATAASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPI 65

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           AS++K+MT  ++ +     +L L+ +  + +S+T          ++  +  + +  +L  
Sbjct: 66  ASISKLMTAMVVLDA----RLPLDEKLKVDISQTP-EMKGVYSRVRLNSEISRKDMLLLA 120

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S N  + +      G  K F   M+ KAK +GM NT +   +GL   N ++TARD  
Sbjct: 121 LMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHN-VSTARDLT 179

Query: 196 ILGILLRKNFPQYYKYFSIRK--FRYRNRIIT----NHNKLLNKM-HNIDGIKTGYTRNS 248
            L ++  K +P   +  + R+    + N   T    N N L+ +   NI   KTG+T  +
Sbjct: 180 KL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAA 238

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           G  +V      + P+  VVM           A  L T 
Sbjct: 239 GHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276


>gi|215487356|ref|YP_002329787.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215265428|emb|CAS09829.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 310

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 117/278 (42%), Gaps = 26/278 (9%)

Query: 28  IQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQDE-PRYP 77
           + L    L L++ +   A    A             S++++D+N N++      +  R  
Sbjct: 6   VSLFSLALMLAVPLAPQAVAKTAAATTVSQPEIASGSAMIVDLNTNKVIYSNHPDLVRPI 65

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           AS++K+MT  ++ +     +L L+ +  + +S+T          ++  +  + +  +L  
Sbjct: 66  ASISKLMTAMVVLDA----RLPLDEKLKVDISQTP-EMKGVYSRVRLNSEISRKDMLLLA 120

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S N  + +      G  K F   M+ KAK +GM NT +   +GL   N ++TARD  
Sbjct: 121 LMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHN-VSTARDLT 179

Query: 196 ILGILLRKNFPQYYKYFSIRK--FRYRNRIIT----NHNKLLNKM-HNIDGIKTGYTRNS 248
            L ++  K +P   +  + R+    + N   T    N N L+ +   NI   KTG+T  +
Sbjct: 180 KL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAA 238

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           G  +V      + P+  VVM           A  L T 
Sbjct: 239 GHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276


>gi|195935505|ref|ZP_03080887.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str.
           EC4024]
 gi|209919593|ref|YP_002293677.1| D-alanyl-D-alanine endopeptidase [Escherichia coli SE11]
 gi|218554700|ref|YP_002387613.1| D-alanyl-D-alanine endopeptidase [Escherichia coli IAI1]
 gi|218695746|ref|YP_002403413.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 55989]
 gi|218699256|ref|YP_002406885.1| D-alanyl-D-alanine endopeptidase [Escherichia coli IAI39]
 gi|218705663|ref|YP_002413182.1| D-alanyl-D-alanine endopeptidase [Escherichia coli UMN026]
 gi|254794027|ref|YP_003078864.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str.
           TW14359]
 gi|260856108|ref|YP_003229999.1| D-alanyl-D-alanine endopeptidase PbpG [Escherichia coli O26:H11
           str. 11368]
 gi|260868837|ref|YP_003235239.1| D-alanyl-D-alanine endopeptidase PbpG [Escherichia coli O111:H-
           str. 11128]
 gi|307311286|ref|ZP_07590930.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Escherichia
           coli W]
 gi|209912852|dbj|BAG77926.1| penicillin-binding protein 7 [Escherichia coli SE11]
 gi|218352478|emb|CAU98255.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 55989]
 gi|218361468|emb|CAQ99057.1| D-alanyl-D-alanine endopeptidase [Escherichia coli IAI1]
 gi|218369242|emb|CAR16999.1| D-alanyl-D-alanine endopeptidase [Escherichia coli IAI39]
 gi|218432760|emb|CAR13654.1| D-alanyl-D-alanine endopeptidase [Escherichia coli UMN026]
 gi|226237489|dbj|BAH47011.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O55:H7]
 gi|254593427|gb|ACT72788.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str.
           TW14359]
 gi|257754757|dbj|BAI26259.1| D-alanyl-D-alanine endopeptidase PbpG [Escherichia coli O26:H11
           str. 11368]
 gi|257765193|dbj|BAI36688.1| D-alanyl-D-alanine endopeptidase PbpG [Escherichia coli O111:H-
           str. 11128]
 gi|306908792|gb|EFN39289.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Escherichia
           coli W]
 gi|320641200|gb|EFX10678.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str.
           G5101]
 gi|320646588|gb|EFX15499.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H- str.
           493-89]
 gi|320651843|gb|EFX20218.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H- str. H
           2687]
 gi|320663173|gb|EFX30482.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667924|gb|EFX34827.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323152361|gb|EFZ38650.1| D-alanyl-D-alanine endopeptidase [Escherichia coli EPECa14]
 gi|323161762|gb|EFZ47643.1| D-alanyl-D-alanine endopeptidase [Escherichia coli E128010]
 gi|323184242|gb|EFZ69619.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 1357]
 gi|323377974|gb|ADX50242.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Escherichia
           coli KO11]
 gi|332092625|gb|EGI97696.1| D-alanyl-D-alanine endopeptidase [Shigella dysenteriae 155-74]
          Length = 310

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 117/278 (42%), Gaps = 26/278 (9%)

Query: 28  IQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQDE-PRYP 77
           + L    L L++ +   A    A             S++++D+N N++      +  R  
Sbjct: 6   VSLFSLALMLAVPLAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPI 65

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           AS++K+MT  ++ +     +L L+ +  + +S+T          ++  +  + +  +L  
Sbjct: 66  ASISKLMTAMVVLDA----RLPLDEKLKVDISQTP-EMKGVYSRVRLNSEISRKDMLLLA 120

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S N  + +      G  K F   M+ KAK +GM NT +   +GL   N ++TARD  
Sbjct: 121 LMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHN-VSTARDLT 179

Query: 196 ILGILLRKNFPQYYKYFSIRK--FRYRNRIIT----NHNKLLNKM-HNIDGIKTGYTRNS 248
            L ++  K +P   +  + R+    + N   T    N N L+ +   NI   KTG+T  +
Sbjct: 180 KL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAA 238

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           G  +V      + P+  VVM           A  L T 
Sbjct: 239 GHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276


>gi|253756292|ref|YP_003029432.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis BM407]
 gi|251818756|emb|CAZ56593.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus suis
           BM407]
          Length = 413

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 58/284 (20%), Positives = 128/284 (45%), Gaps = 28/284 (9%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQS 95
           + +    + +E  +     +I ++V+  ++   +  E +   AS++K +++Y+++E L  
Sbjct: 14  VFLTSTPILAEDFSVAAKHAIAVEVSSGKILYEQDAETKASIASISKTLSIYLVYEALAK 73

Query: 96  KKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            ++ L+T + +S    +       S + L E++Y +    + A +  S+N    A  E I
Sbjct: 74  GEITLDTMVDISDYPYSLTSNTELSNVNLDERSY-SVRDLLNASLITSSNSAIIALAEKI 132

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------------QITTARDQAIL 197
           +GSE  F   M  K ++ G+ +T   N SGL + +               + +A D AI+
Sbjct: 133 AGSEAAFVDRMKAKVQEWGITDTKIVNVSGLDNTDLGENIYPSSSPEDVNMFSALDVAII 192

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNIDGIKTGYTRNSGFNIV 253
              L  ++PQ     S+  + +      + N++L+        +DG+KTG + ++G + +
Sbjct: 193 ARRLILDYPQVLDITSLNAYDFGGYTYYSTNQMLSDGTHARGGVDGLKTGTSNSAGSSFL 252

Query: 254 TSLRYKDDPIVAVVM----GMPTSQERDQKALELITSFLEKKTL 293
            + +     I+ VV+    G+ + + R     +L+       +L
Sbjct: 253 ATTQQAGMRIITVVLNANDGLTSPENRFVATNDLMNYVYSNFSL 296


>gi|301024377|ref|ZP_07188066.1| beta-lactamase [Escherichia coli MS 196-1]
 gi|299880474|gb|EFI88685.1| beta-lactamase [Escherichia coli MS 196-1]
          Length = 291

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 108/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAA 111
           S++++D+N N++      +  R  AS++K+MT  ++ +     +L L+ +  + +S+T  
Sbjct: 29  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDA----RLPLDEKLKVDISQTP- 83

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +      G  K F   M+ KAK +GM
Sbjct: 84  EMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGM 143

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIIT---- 225
            NT +   +GL   N ++TARD   L ++  K +P   +  + R+    + N   T    
Sbjct: 144 NNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFR 201

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L 
Sbjct: 202 NTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLR 261

Query: 285 TS 286
           T 
Sbjct: 262 TW 263


>gi|325263916|ref|ZP_08130649.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
 gi|324030954|gb|EGB92236.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
          Length = 330

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 108/253 (42%), Gaps = 25/253 (9%)

Query: 54  YSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA- 111
           +++ + D+   ++    K  +  YPAS TK+MT Y+  +Y      +L+  + V   A  
Sbjct: 74  HAAGLFDLKNEKVLYADKIHDRLYPASTTKVMTAYVTLKYG-----NLDDIVTVGPNATQ 128

Query: 112 -TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
              +     L+     T    +  L+  S ND + A  E ++GS + FA +M+ +A  +G
Sbjct: 129 FAADEQICGLQTGDTATLYDLLNGLVLYSGNDCAVAIAEHLAGSVEAFADMMNTEAAALG 188

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF---------RYRN 221
             NT + N  GL D N  TTA D  ++     K+  ++    S   +           R+
Sbjct: 189 ATNTHFVNPHGLQDDNHYTTAYDLYLMFNACVKD-QRFLDIISQDSYTGTLTGADGTVRS 247

Query: 222 RIITNHN----KLLNKMHNID--GIKTGYTRNSGFNIVTSLRYKD-DPIVAVVMGMPTSQ 274
            +    N     L+     I+  G KTG T  +G  ++   +    +P +++VMG  T  
Sbjct: 248 EVWHPTNFYSQNLVPAPEGINVFGGKTGTTDEAGSCVILYSQDPQANPYISIVMGAETKD 307

Query: 275 ERDQKALELITSF 287
               +   L+++ 
Sbjct: 308 LLYSQMSALMSAG 320


>gi|319936455|ref|ZP_08010871.1| serine-type D-Ala-D-Ala carboxypeptidase [Coprobacillus sp. 29_1]
 gi|319808570|gb|EFW05122.1| serine-type D-Ala-D-Ala carboxypeptidase [Coprobacillus sp. 29_1]
          Length = 337

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 108/252 (42%), Gaps = 13/252 (5%)

Query: 31  MGKILFLSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLY 87
           M KI F+  +     + +HA      S IV+D     +   K +   +  AS++K+MT  
Sbjct: 1   MKKIFFVICVFFMSVTPIHAMDFSGKSYIVMDTFNKTVLEAKNEHYVQSVASISKIMTAI 60

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           +  E       +L+ +  + +       S +Y+    +      +  L+ RS ND +   
Sbjct: 61  VAIE-----NGNLDDEYEIGEEVNQAWGSGVYIHIGDHINLRDLLHGLLLRSGNDAANVI 115

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILGILLRKNF 205
            + I G    F  +M+ KAK IGM ++++ NA+GL   D    ++A D A+L     +N 
Sbjct: 116 AKNIGGDIPHFVEMMNKKAKDIGMNDSVFSNATGLDEEDAGNRSSAYDMALLMSYCSQN- 174

Query: 206 PQYYKYFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           P +      + ++         N N+LL +     G KTG+T+ +   +VT     D  +
Sbjct: 175 PIFNDIVMKQTYKREDGGGTWHNKNRLLEEYEYCVGGKTGFTKKARRTLVTRAIKNDVSL 234

Query: 264 VAVVMGMPTSQE 275
           V V +      E
Sbjct: 235 VIVTLNCGNDFE 246


>gi|260551083|ref|ZP_05825287.1| D-alanyl-D-alanine endopeptidase [Acinetobacter sp. RUH2624]
 gi|260405850|gb|EEW99338.1| D-alanyl-D-alanine endopeptidase [Acinetobacter sp. RUH2624]
          Length = 348

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 111/253 (43%), Gaps = 18/253 (7%)

Query: 49  HAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +A+P  S+   +V+D    ++   K  +     AS+TK+MT  +  +     +L+++ +I
Sbjct: 97  NAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKLMTAVVTADA----RLNMSEEI 152

Query: 105 P---VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
               +    A    S   L+        + +L  + +S N  + A      G    F   
Sbjct: 153 TLEQIDFAGANGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRPAFVAA 212

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR- 220
           M+ KA+ +GM  T Y  ++GL D   +++ARD  IL     + +    ++ +   + +  
Sbjct: 213 MNAKARSLGMNATHYYESTGL-DPRNVSSARDLGILASTASQ-YGLIRQFSTTPTYDFNL 270

Query: 221 -NRII--TNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
             R++   N N L+ N   NI+  KTGY   +G  +V        P V V++G P++Q R
Sbjct: 271 GYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEPSTQAR 330

Query: 277 DQKALELITSFLE 289
           +  A  L+     
Sbjct: 331 NNDATNLLGWLSN 343


>gi|238749857|ref|ZP_04611361.1| D-alanyl-D-alanine endopeptidase [Yersinia rohdei ATCC 43380]
 gi|238711786|gb|EEQ04000.1| D-alanyl-D-alanine endopeptidase [Yersinia rohdei ATCC 43380]
          Length = 311

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 59/241 (24%), Positives = 100/241 (41%), Gaps = 15/241 (6%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S++VID+  N++      DE    AS+TK+MT  ++ +     KL L+  I V       
Sbjct: 46  SAMVIDLQTNKVIYANNADEVVPIASITKLMTAMVVLDA----KLPLDEIISVDIHQTKE 101

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  ++  +  + +  +L  +  S N  + +      G    F   M+ KAK +GM 
Sbjct: 102 MKGVFSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNAKAKSLGMT 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT--N 226
            T Y   +GL  +N ++TARD   L ++  K +P   +  +  +    FR  N  +   N
Sbjct: 162 KTRYVEPTGLSIEN-VSTARDLTKL-LVATKQYPLIGQLSTTTEKMATFREPNYTLPFRN 219

Query: 227 HNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+     NI   KTG+T  +G  +       + P+  VV+           A  L +
Sbjct: 220 TNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPVALVVLDAFGKYTHFADANRLRS 279

Query: 286 S 286
            
Sbjct: 280 W 280


>gi|111220633|ref|YP_711427.1| putative D-alanyl-D-alanine carboxypeptidase [Frankia alni ACN14a]
 gi|111148165|emb|CAJ59835.1| Putative D-alanyl-D-alanine carboxypeptidase (partial match)
           [Frankia alni ACN14a]
          Length = 541

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 92/242 (38%), Gaps = 15/242 (6%)

Query: 53  KYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + +V D     +    +   P  PAS  K++T   +        L  +  I V + A 
Sbjct: 81  AQAWLVADAGSGAVLAASRPHAPDLPASTMKILTALTVL----PG-LPPDRVITVDENAP 135

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + +K+ L     +T      A++  S ND + A  E  +G        M+  A+ +G 
Sbjct: 136 RVDGTKVGLVPGVGYTVRDLATAMMISSGNDATVALVEA-AGGTAAVLARMNALARSLGT 194

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITN 226
           + T+  + +GL    Q+T+  D A+LG     + P    Y +I +     R      I N
Sbjct: 195 RETVAGDPTGLDSPGQVTSVYDLAVLGRAALND-PSVRGYLTIPRASLAGRGDQRFEIQN 253

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           HN LL       G+K GYT  +G   V +       ++  ++    +      A  L+  
Sbjct: 254 HNALLRTYDGAVGVKNGYTVAAGATFVGAATRGGRTLIVALLRAAPAYG--TDARALLDW 311

Query: 287 FL 288
             
Sbjct: 312 GF 313


>gi|317047420|ref|YP_004115068.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pantoea sp.
           At-9b]
 gi|316949037|gb|ADU68512.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pantoea sp.
           At-9b]
          Length = 317

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 62/290 (21%), Positives = 118/290 (40%), Gaps = 33/290 (11%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELH-----------AKPKY---SSIVIDVNKNQMT 67
           + ++  I L+   L +    ++                 A+P+    S++++D++  ++ 
Sbjct: 1   MSVKIRISLLSLALMIGAPAVTTPVLAAPAAALSNLAPVAQPQIASGSAMIVDLDNGKVL 60

Query: 68  GF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQN-PSKLYLKEK 123
                D  R  ASLTK+MT  ++ +     KL L+    + +S TA  +   S++ L   
Sbjct: 61  FSSHPDRVRPIASLTKLMTAMVVLDA----KLPLDEMLSVDISHTAEMRGVFSRVKL--N 114

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
           +  +    +L  +  S N  + +      G    F   M+ KA+ +GM +T Y   +GL 
Sbjct: 115 SEISRRNMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKARALGMTHTHYVEPTGLS 174

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT--NHNKLLNKMHN- 236
             N +++A D   L    R+ +P   +  + ++    F + +  +   N N L+ K    
Sbjct: 175 IHN-VSSAEDLIKLVKATRQ-YPLIGQLSTTKEDTAVFTHPSYALPFRNTNHLVYKNDWR 232

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           I   KTGYT  +G  +V      + P+  VV+           A  L   
Sbjct: 233 IQLTKTGYTDEAGHCLVMRTVINNRPVALVVLDAFGKYTHFADANRLRDW 282


>gi|123443099|ref|YP_001007073.1| D-alanyl-D-alanine endopeptidase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090060|emb|CAL12923.1| penicillin-binding protein 7 precursor [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 311

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 63/264 (23%), Positives = 106/264 (40%), Gaps = 20/264 (7%)

Query: 38  SIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFE 91
           + I    ASE+  K        S++V+D+  N++      DE    AS+TK+MT  ++ +
Sbjct: 24  TAIASGGASEVKGKAPLELASGSAMVVDLQTNKVIYANNADEVVPIASITKLMTAMVVLD 83

Query: 92  YLQSKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
                KL L+  I V              ++  +  + +  +L  +  S N  + +    
Sbjct: 84  A----KLPLDEIISVDIHQTKEMKGVFSRVRVNSEISRKDMLLLALMSSENRAAASLAHH 139

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
             G    F   M+ KAK +GM  T Y   +GL   N ++TARD   L ++  K +P   +
Sbjct: 140 YPGGYNAFIKAMNAKAKSLGMTKTRYVEPTGLSI-NNVSTARDLTKL-LIATKQYPLIGQ 197

Query: 211 YFSIRK----FRYRNRIIT--NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
             +  +    FR  N  +   N N L+     NI   KTG+T  +G  +       + P+
Sbjct: 198 LSTTTEKMATFREPNYTLPFRNTNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPV 257

Query: 264 VAVVMGMPTSQERDQKALELITSF 287
             VV+           A  L +  
Sbjct: 258 ALVVLDAFGKYTHFADANRLRSWM 281


>gi|294786845|ref|ZP_06752099.1| serine-type D-Ala-D-Ala carboxypeptidase [Parascardovia denticolens
           F0305]
 gi|294485678|gb|EFG33312.1| serine-type D-Ala-D-Ala carboxypeptidase [Parascardovia denticolens
           F0305]
          Length = 430

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 118/296 (39%), Gaps = 30/296 (10%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT---AA 111
           +  I+    ++   +  DEP   AS+TK++TLY+ ++ +   KL  +T++ VS      A
Sbjct: 9   AYAIEYQTGRVLLDQDGDEPAGIASMTKLITLYLTYKAVAQGKLTWSTKVHVSDYSYQVA 68

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           T   +      +  FT    + A +  SAN  + +  E I GSE KF  LM  + +  G+
Sbjct: 69  TNPLTTSADMSRREFTVSDLVNAAMLPSANSAAISLAERIGGSEPKFVDLMRAQVRAWGI 128

Query: 172 QNTIYKNASGLHD--------------KNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
            +    NASGL++                   +A+D AI+   L  ++P         + 
Sbjct: 129 TDARIYNASGLNNSFLGSNIYPGSSSKAENALSAKDMAIVAWHLIHDYPSILTISKKTQA 188

Query: 218 RYRNRIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            +  + I+  N +L         +DG+KTG T  +G     +   K   ++AVV     +
Sbjct: 189 SFGGKTISTTNHMLPGEEAAYPGVDGLKTGTTDEAGACFTATALVKGMRVIAVVQKADKA 248

Query: 274 Q----ERDQKALELITSFLEKK----TLKHQQTHRKDNLSSTSLKKSLMIKKLKRT 321
                 R +    L     +       +   + ++   ++    ++  +I    R 
Sbjct: 249 DADPLARFKAMKTLFDYCYQAYRMVIVVSQGKQYKGSTVAVQDGQERSVIAVADRD 304


>gi|332093252|gb|EGI98312.1| D-alanyl-D-alanine endopeptidase [Shigella boydii 5216-82]
          Length = 310

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 65/285 (22%), Positives = 119/285 (41%), Gaps = 26/285 (9%)

Query: 28  IQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQDE-PRYP 77
           + L    L L++ +   A    A             S++++D+N N++      +  R  
Sbjct: 6   VSLFSLALMLAVPLAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPI 65

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           AS++K+MT  ++ +     +L L+ +  + +S+T          ++  +  + +  +L  
Sbjct: 66  ASISKLMTAMVVLDA----RLPLDEKLKVDISQTP-EMKGVYSRVRLNSEISRKDMLLLA 120

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S N  + +      G  K F   M+ KAK +GM NT +   +GL   N ++TARD  
Sbjct: 121 LMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHN-VSTARDLT 179

Query: 196 ILGILLRKNFPQYYKYFSIRK--FRYRNRIIT----NHNKLLNKM-HNIDGIKTGYTRNS 248
            L ++  K +P   +  + R+    + N   T    N N L+ +   NI   KTG+T  +
Sbjct: 180 KL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAA 238

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
           G  +V      + P+  VVM           A  L T     K +
Sbjct: 239 GHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTWIETSKVM 283


>gi|222152531|ref|YP_002561706.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus uberis 0140J]
 gi|222113342|emb|CAR40942.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus uberis
           0140J]
          Length = 416

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 72/304 (23%), Positives = 138/304 (45%), Gaps = 30/304 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             S+I  DV+  ++   K ++   P ASL+K++T Y++++ ++S KL  +T + +S    
Sbjct: 33  AKSAIAFDVSTGKVLYQKNEKEVLPVASLSKVLTTYLVYKEVKSGKLSWDTPVTISNYPY 92

Query: 111 ---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                 + S + L  +  +T ++ + A++  +AN  + A  E ISG+E +F  LM+ + K
Sbjct: 93  ELTTNYSISNVPLDAR-QYTVKELLNAVLVTNANSAAIALAEKISGTEPRFVDLMTKQLK 151

Query: 168 KIGMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           + G+++    NA+GL               D     +A D AI+   L   FP+  K+  
Sbjct: 152 EWGIKDAKLVNATGLSNAILGDHIYPYSTSDDENQMSALDLAIVSNHLLSEFPEVLKHTQ 211

Query: 214 IRKFRYRNRIITNHNKLLNKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
                + N+ I ++N +L  M      ++G+   Y+  SG + + S    +  +V VV+ 
Sbjct: 212 KASATFSNQKIFSYNYMLKGMPNYRDGVNGLFVAYSEKSGASFLASSTENNMSVVTVVLN 271

Query: 270 MPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKID 329
              S E      E +  F E  TL +  ++  + +      K +   KL     + K ++
Sbjct: 272 AEQSNE------EELGHFRETNTLLNYISNHFEPVILLEKGKKVPKTKLNLLDGKQKSVN 325

Query: 330 AKAH 333
             A 
Sbjct: 326 LIAK 329


>gi|169823800|ref|YP_001691411.1| D-alanyl-D-alanine carboxypeptidase [Finegoldia magna ATCC 29328]
 gi|167830605|dbj|BAG07521.1| D-alanyl-D-alanine carboxypeptidase [Finegoldia magna ATCC 29328]
          Length = 394

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 75/310 (24%), Positives = 142/310 (45%), Gaps = 19/310 (6%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY-----SSIVIDVN-KNQMTGFKQDEPRYP 77
           I++ I LM   L L+I+     S+  +K  +     +   I+ +   ++  + +++P   
Sbjct: 4   IKKIIPLM---LVLAIVFQPALSKADSKLGFEDKVKAYYTIEQDYSQELLNYNENKPLAI 60

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT  ++ E + + K  L+ +I +    A    S + LK+    T    I  ++ 
Sbjct: 61  ASLTKIMTYVLVMEDINANKYKLDDKIKIQTQYAKPEASTMQLKKGEELTVNDLIRGMMI 120

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKNQITTARDQA 195
            S ND +        GS  KF   M+ KA ++ +++  + +ASG    DK  + +A+D A
Sbjct: 121 VSGNDAADELAVKSEGSVGKFVERMNKKAAELELESAKFYSASGYPENDKENLMSAKDLA 180

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIIT--NHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            L      N+PQ   Y   +K    +R          L K+  +DG KTG T  +G+ ++
Sbjct: 181 KLTTYTINNYPQVLNYTKTQKLVMPSRKYEAATTIPFLGKIEGVDGFKTGTTEKAGYCLI 240

Query: 254 TSLRYK----DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSL 309
           T++  K     + +V+V+MG PT  +R+     ++     + + +       +    T  
Sbjct: 241 TTMSLKPNNPKNKVVSVLMGAPTKYDRNTYQKIMLEYV--RNSFEPMNILNSEKPIETKS 298

Query: 310 KKSLMIKKLK 319
             S++ KK++
Sbjct: 299 VDSVVDKKVE 308


>gi|331683812|ref|ZP_08384408.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli H299]
 gi|331078764|gb|EGI49966.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli H299]
          Length = 313

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 116/278 (41%), Gaps = 26/278 (9%)

Query: 28  IQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQDE-PRYP 77
           + L    L L++     A    A             S++++D+N N++      +  R  
Sbjct: 9   VSLFSLTLMLAVPFAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPI 68

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           AS++K+MT  ++ +     +L L+ +  + +S+T          ++  +  + +  +L  
Sbjct: 69  ASISKLMTAMVVLDA----RLPLDEKLKVDISQTP-EMKGVYSRVRLNSEISRKDMLLLA 123

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S N  + +      G  K F   M+ KAK +GM NT +   +GL   N ++TARD  
Sbjct: 124 LMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHN-VSTARDLT 182

Query: 196 ILGILLRKNFPQYYKYFSIRK--FRYRNRIIT----NHNKLLNKM-HNIDGIKTGYTRNS 248
            L ++  K +P   +  + R+    + N   T    N N L+ +   NI   KTG+T  +
Sbjct: 183 KL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAA 241

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           G  +V      + P+  VVM           A  L T 
Sbjct: 242 GHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 279


>gi|323972881|gb|EGB68079.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TA007]
          Length = 314

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 108/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAA 111
           S++++D+N N++      +  R  AS++K+MT  ++ +     +L L+ +  + +S+T  
Sbjct: 45  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDA----RLPLDEKLKVDISQTP- 99

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +      G  K F   M+ KAK +GM
Sbjct: 100 EMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGM 159

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIIT---- 225
            NT +   +GL   N ++TARD   L ++  K +P   +  + R+    + N   T    
Sbjct: 160 NNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFR 217

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L 
Sbjct: 218 NTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLR 277

Query: 285 TS 286
           T 
Sbjct: 278 TW 279


>gi|256027623|ref|ZP_05441457.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. D11]
 gi|289765581|ref|ZP_06524959.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. D11]
 gi|289717136|gb|EFD81148.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. D11]
          Length = 407

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 71/256 (27%), Positives = 122/256 (47%), Gaps = 12/256 (4%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++++   K  +   K  +  YP AS+TKMM+L + F+ + +  + LN  + +SKT     
Sbjct: 154 AVIVGDTKGNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGNISLNDSVRISKTPLKYG 213

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQN 173
            S + LK    F  E  I A    SAN+ + A  E++  GS   F   M+ K +++G+QN
Sbjct: 214 GSGIALKAGQMFILEDLIKAAAVYSANNATYAIAEYVGNGSIFGFVTKMNKKLRELGLQN 273

Query: 174 -TIYKNASGLHD-----KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIIT 225
              Y   +GL            TAR    L I   K + +Y +   I+  +  N    I 
Sbjct: 274 EIKYHTPAGLPTRVTKQPMDEGTARGIYKLSIEALK-YKKYIEIAGIKTTKIHNDKISIR 332

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N N L+ + + + GIKTG+ + + +NI  + +++   ++ VV+G  T + RD     ++ 
Sbjct: 333 NRNHLIGE-NGVYGIKTGFHKEAKYNIAVASKFEGTDVIIVVLGGETYKTRDNLVRNILN 391

Query: 286 SFLEKKTLKHQQTHRK 301
              E  T+K+    RK
Sbjct: 392 ILSENYTVKNGLIKRK 407


>gi|228951756|ref|ZP_04113856.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228957645|ref|ZP_04119393.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229043115|ref|ZP_04190843.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
 gi|229068926|ref|ZP_04202220.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
 gi|229078559|ref|ZP_04211118.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
 gi|229108831|ref|ZP_04238436.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
 gi|229126691|ref|ZP_04255703.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
 gi|228656631|gb|EEL12457.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
 gi|228674600|gb|EEL29839.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
 gi|228704784|gb|EEL57211.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
 gi|228714210|gb|EEL66091.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
 gi|228726254|gb|EEL77483.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
 gi|228802030|gb|EEM48899.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228807926|gb|EEM54445.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 405

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 69/284 (24%), Positives = 121/284 (42%), Gaps = 21/284 (7%)

Query: 59  IDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K      YPAS TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 32  IDAKTGDVLYDKNAYHRAYPASTTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 86

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ KAK++G +++ 
Sbjct: 87  YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSH 146

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  + ++        T    N +   
Sbjct: 147 FVTPNGLHDPNHYTTPYDMAMITKGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSNFF 205

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I++VVM     +  E  ++  E       
Sbjct: 206 EN-PYSIGGKTGFTNEARNTLVLLNEKDGNRIISVVMASQRPEIYEDLKQMAEYSFGQFT 264

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           K+ +      HQ+T   +   ++ L++S  +   K      K I
Sbjct: 265 KQMVLDKHNWHQKTTYLNKDVNSELEQSAELMLKKDEGKNVKTI 308


>gi|323486820|ref|ZP_08092138.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum
           WAL-14163]
 gi|323399833|gb|EGA92213.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum
           WAL-14163]
          Length = 532

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 133/292 (45%), Gaps = 28/292 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-- 111
           + I++D N   +   K     Y PAS+TK++T  I+ E     +  ++  +  S+ A   
Sbjct: 39  AGIIMDANSGAVIYGKNIHATYAPASITKVLTALIVLE-----RCSMDETVTFSQNAVYN 93

Query: 112 -TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
              N S          + +  + AL+ +SAN+ + A  E ISG+ ++FA+LM+ KA ++G
Sbjct: 94  VESNSSSAGYDTGDTASVKDCLYALLLKSANEAANALAEHISGTTEEFAVLMNEKAAELG 153

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-------RYRNRI 223
            Q++ + N SGL+D+N   +A D A++     +N   + K  +   +           + 
Sbjct: 154 CQDSHFSNPSGLNDENHYVSAYDMALITKAAFEN-ADFSKIVATTYYELPPNKKNPEGQG 212

Query: 224 ITNHNKLLNKMH------NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           I+  NK++ K        ++ G KTGYT  +   +V   +  +   V V++    +Q  D
Sbjct: 213 ISPGNKMIKKNWPDQYRPDVIGGKTGYTSIALNTLVIGAQQGETKFVTVILHSSGTQYSD 272

Query: 278 QKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKID 329
            KAL L   F   K ++     +    + +++   L I  L  +  Q   ID
Sbjct: 273 TKAL-LNFGFNNFKAVRIADYDK----TFSTIGDDLKISGLPTSEKQVLTID 319


>gi|193070497|ref|ZP_03051437.1| penicillin-binding protein 7 [Escherichia coli E110019]
 gi|192956191|gb|EDV86654.1| penicillin-binding protein 7 [Escherichia coli E110019]
 gi|315615372|gb|EFU96004.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 3431]
 gi|332765942|gb|EGJ96152.1| penicillin-binding protein 7 [Shigella flexneri 2930-71]
 gi|333016619|gb|EGK35948.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri K-304]
          Length = 297

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 108/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAA 111
           S++++D+N N++      +  R  AS++K+MT  ++ +     +L L+ +  + +S+T  
Sbjct: 29  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDA----RLPLDEKLKVDISQTP- 83

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +      G  K F   M+ KAK +GM
Sbjct: 84  EMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGM 143

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIIT---- 225
            NT +   +GL   N ++TARD   L ++  K +P   +  + R+    + N   T    
Sbjct: 144 NNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFR 201

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L 
Sbjct: 202 NTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLR 261

Query: 285 TS 286
           T 
Sbjct: 262 TW 263


>gi|323944951|gb|EGB41016.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H120]
          Length = 314

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 117/278 (42%), Gaps = 26/278 (9%)

Query: 28  IQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQDE-PRYP 77
           + L    L L++ +   A    A             S++++D+N N++      +  R  
Sbjct: 9   VSLFSLALMLAVPLAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPI 68

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           AS++K+MT  ++ +     +L L+ +  + +S+T          ++  +  + +  +L  
Sbjct: 69  ASISKLMTAMVVLDA----RLPLDEKLKVDISQTP-EMKGVYSRVRLNSEISRKDMLLLA 123

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S N  + +      G  K F   M+ KAK +GM NT +   +GL   N ++TARD  
Sbjct: 124 LMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHN-VSTARDLT 182

Query: 196 ILGILLRKNFPQYYKYFSIRK--FRYRNRIIT----NHNKLLNKM-HNIDGIKTGYTRNS 248
            L ++  K +P   +  + R+    + N   T    N N L+ +   NI   KTG+T  +
Sbjct: 183 KL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAA 241

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           G  +V      + P+  VVM           A  L T 
Sbjct: 242 GHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 279


>gi|323168727|gb|EFZ54407.1| D-alanyl-D-alanine endopeptidase [Shigella sonnei 53G]
          Length = 298

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 108/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAA 111
           S++++D+N N++      +  R  AS++K+MT  ++ +     +L L+ +  + +S+T  
Sbjct: 29  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDA----RLPLDEKLKVDISQTP- 83

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +      G  K F   M+ KAK +GM
Sbjct: 84  EMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGM 143

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIIT---- 225
            NT +   +GL   N ++TARD   L ++  K +P   +  + R+    + N   T    
Sbjct: 144 NNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFR 201

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L 
Sbjct: 202 NTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLR 261

Query: 285 TS 286
           T 
Sbjct: 262 TW 263


>gi|310767083|gb|ADP12033.1| penicillin-binding protein 7 [Erwinia sp. Ejp617]
          Length = 316

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 112/262 (42%), Gaps = 20/262 (7%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +S A++  A    S++++D+N N++      D  R  AS+TK+MT+ +  +      L L
Sbjct: 34  VSSAAQ-PAIASGSAMIVDLNSNKVIYESHPDRVRPIASITKLMTVMVTLDAH----LPL 88

Query: 101 NT--QIPVSKTAATQNP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           +   ++ +S T   +   S++ L   +  + +  +L  +  S N  + +      G    
Sbjct: 89  DEMLKVDISHTPQMRGIYSRVRL--NSELSRKNMMLLALMSSENRAAASLAHHYPGGYDA 146

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK- 216
           F   M+ KA+ +GM +T Y   +GL   + ++TARD + L     K +P   +  +  + 
Sbjct: 147 FIRAMNAKARALGMSHTRYVEPTGLSI-DNVSTARDLSKLLQAT-KRYPLIGQLSTTHED 204

Query: 217 ---FRYRNRIIT--NHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
              FR  N  +   N N L+ +   NI   KTG+T  +G  +V        P+  VV+  
Sbjct: 205 MASFRSPNYTLPFRNTNHLVYRPDWNIQLTKTGFTNEAGHCLVMRTVINQRPVSLVVLDA 264

Query: 271 PTSQERDQKALELITSFLEKKT 292
                    A  L       K 
Sbjct: 265 FGKYTHFADASRLRQWMENGKV 286


>gi|228907005|ref|ZP_04070872.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           200]
 gi|228852753|gb|EEM97540.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           200]
          Length = 405

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 70/284 (24%), Positives = 123/284 (43%), Gaps = 21/284 (7%)

Query: 59  IDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 32  IDAKTGDVLYDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFAFSQLALDQEKSN 86

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ KAK++G +++ 
Sbjct: 87  YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGARDSH 146

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  + ++        T    N +   
Sbjct: 147 FVTPNGLHDPNHYTTPYDMAMITKGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSNFF 205

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I+ VVM     +  E  ++  +       
Sbjct: 206 EN-PYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMADYSFGQFV 264

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           K+T+      HQ+T   +   ++ L+KS  +   K      K I
Sbjct: 265 KQTVLDKHSWHQKTTYLNKDINSELEKSAELMLKKDEGKNVKTI 308


>gi|322385858|ref|ZP_08059501.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus cristatus
           ATCC 51100]
 gi|321270143|gb|EFX53060.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus cristatus
           ATCC 51100]
          Length = 447

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 75/302 (24%), Positives = 132/302 (43%), Gaps = 47/302 (15%)

Query: 24  IQRNIQLMGKILFLSIIMISMAS----------------ELHAKPKYSSIVIDVNKNQMT 67
           +++   + G IL   +  +S A+                +   +PK SS++ID N   + 
Sbjct: 1   MKKKFLVFGLILSAFLSPLSAAADELVDMARKMYPNENVQAINRPK-SSLMIDGNTGDIL 59

Query: 68  GFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKE 122
                DE R PAS++K+MTLY++FE ++  KL L+T I  +      A     S   +  
Sbjct: 60  WQDNIDEVRDPASMSKIMTLYLVFEAIKEGKLSLDTVIKATPQDQAVAGIYEISNNKIVA 119

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASG 181
              +T  + I   +  S+N  +     ++S ++   F   M+ KA+++GM NT + NASG
Sbjct: 120 GVNYTVSELITMTVVPSSNATTVMLANYLSDNDPDAFLDKMNAKAQELGMTNTKWFNASG 179

Query: 182 LHD---------------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----N 221
                              +  TTARD  IL     KN+P    Y +  K   +      
Sbjct: 180 AAAVSFKGYYTPQRYNNYASNQTTARDLGILVYNFVKNYPDILNYTNQAKVTVKAGTPYE 239

Query: 222 RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
                +N  L      +  +DG+KTG + N  FN + +++  +  ++ V+MG+    ++D
Sbjct: 240 ETFETYNYSLPGARYALEGVDGLKTGSSPNGAFNYIATVKRGNQRVIGVIMGVGDWADQD 299

Query: 278 QK 279
            +
Sbjct: 300 GE 301


>gi|229143980|ref|ZP_04272397.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
 gi|228639543|gb|EEK95956.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
          Length = 405

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 69/284 (24%), Positives = 121/284 (42%), Gaps = 21/284 (7%)

Query: 59  IDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K      YPAS TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 32  IDAKTGDVLYDKNAYHRAYPASTTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 86

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ KAK++G +++ 
Sbjct: 87  YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSH 146

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  + ++        T    N +   
Sbjct: 147 FVTPNGLHDPNHYTTPYDMAMITKGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSNFF 205

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I++VVM     +  E  ++  E       
Sbjct: 206 EN-PYSIGGKTGFTNEARNTLVLLNEKDGNRIISVVMASQRPEIYEDLKQMAEYSFGQFT 264

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           K+ +      HQ+T   +   ++ L++S  +   K      K I
Sbjct: 265 KQMVLDKHNWHQKTTYLNKDVNSELEQSAELMLKKDEGKNVKTI 308


>gi|15802684|ref|NP_288711.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 EDL933]
 gi|15832275|ref|NP_311048.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str.
           Sakai]
 gi|74312658|ref|YP_311077.1| D-alanyl-D-alanine endopeptidase [Shigella sonnei Ss046]
 gi|157161616|ref|YP_001458934.1| D-alanyl-D-alanine endopeptidase [Escherichia coli HS]
 gi|168764225|ref|ZP_02789232.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4501]
 gi|168771600|ref|ZP_02796607.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4486]
 gi|168777288|ref|ZP_02802295.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4196]
 gi|168783704|ref|ZP_02808711.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4076]
 gi|170019548|ref|YP_001724502.1| D-alanyl-D-alanine endopeptidase [Escherichia coli ATCC 8739]
 gi|188025021|ref|ZP_02775528.2| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4113]
 gi|188491726|ref|ZP_02998996.1| penicillin-binding protein 7 [Escherichia coli 53638]
 gi|189402480|ref|ZP_02782715.2| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4401]
 gi|189405204|ref|ZP_02813943.2| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC869]
 gi|189406078|ref|ZP_02826192.2| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC508]
 gi|193062314|ref|ZP_03043409.1| penicillin-binding protein 7 [Escherichia coli E22]
 gi|194427101|ref|ZP_03059652.1| penicillin-binding protein 7 [Escherichia coli B171]
 gi|194431501|ref|ZP_03063793.1| penicillin-binding protein 7 [Shigella dysenteriae 1012]
 gi|208809227|ref|ZP_03251564.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4206]
 gi|208813477|ref|ZP_03254806.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4045]
 gi|208818552|ref|ZP_03258872.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4042]
 gi|209396832|ref|YP_002271537.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4115]
 gi|217327143|ref|ZP_03443226.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str.
           TW14588]
 gi|261223412|ref|ZP_05937693.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261259038|ref|ZP_05951571.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283382|ref|YP_003500200.1| Penicillin-binding protein 7 [Escherichia coli O55:H7 str. CB9615]
 gi|293405603|ref|ZP_06649595.1| pbpG [Escherichia coli FVEC1412]
 gi|293410496|ref|ZP_06654072.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293446485|ref|ZP_06662907.1| D-alanyl-D-alanine endopeptidase [Escherichia coli B088]
 gi|298381285|ref|ZP_06990884.1| pbpG [Escherichia coli FVEC1302]
 gi|300901247|ref|ZP_07119348.1| beta-lactamase [Escherichia coli MS 198-1]
 gi|300948233|ref|ZP_07162354.1| beta-lactamase [Escherichia coli MS 116-1]
 gi|331663631|ref|ZP_08364541.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli TA143]
 gi|12516442|gb|AAG57266.1|AE005445_3 penicillin-binding protein 7 [Escherichia coli O157:H7 str. EDL933]
 gi|13362490|dbj|BAB36444.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. Sakai]
 gi|73856135|gb|AAZ88842.1| penicillin-binding protein 7 [Shigella sonnei Ss046]
 gi|157067296|gb|ABV06551.1| penicillin-binding protein 7 [Escherichia coli HS]
 gi|169754476|gb|ACA77175.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Escherichia
           coli ATCC 8739]
 gi|187767413|gb|EDU31257.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4196]
 gi|188015308|gb|EDU53430.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4113]
 gi|188486925|gb|EDU62028.1| penicillin-binding protein 7 [Escherichia coli 53638]
 gi|188999045|gb|EDU68031.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4076]
 gi|189355332|gb|EDU73751.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4401]
 gi|189359688|gb|EDU78107.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4486]
 gi|189365744|gb|EDU84160.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4501]
 gi|189371364|gb|EDU89780.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC869]
 gi|189376656|gb|EDU95072.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC508]
 gi|192931980|gb|EDV84579.1| penicillin-binding protein 7 [Escherichia coli E22]
 gi|194414722|gb|EDX30993.1| penicillin-binding protein 7 [Escherichia coli B171]
 gi|194420326|gb|EDX36403.1| penicillin-binding protein 7 [Shigella dysenteriae 1012]
 gi|208729028|gb|EDZ78629.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4206]
 gi|208734754|gb|EDZ83441.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4045]
 gi|208738675|gb|EDZ86357.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4042]
 gi|209158232|gb|ACI35665.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4115]
 gi|209766398|gb|ACI81511.1| penicillin-binding protein 7 [Escherichia coli]
 gi|209766400|gb|ACI81512.1| penicillin-binding protein 7 [Escherichia coli]
 gi|209766402|gb|ACI81513.1| penicillin-binding protein 7 [Escherichia coli]
 gi|209766404|gb|ACI81514.1| penicillin-binding protein 7 [Escherichia coli]
 gi|209766406|gb|ACI81515.1| penicillin-binding protein 7 [Escherichia coli]
 gi|217319510|gb|EEC27935.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str.
           TW14588]
 gi|284922120|emb|CBG35201.1| penicillin-binding protein 7 [Escherichia coli 042]
 gi|290763255|gb|ADD57216.1| Penicillin-binding protein 7 [Escherichia coli O55:H7 str. CB9615]
 gi|291323315|gb|EFE62743.1| D-alanyl-D-alanine endopeptidase [Escherichia coli B088]
 gi|291427811|gb|EFF00838.1| pbpG [Escherichia coli FVEC1412]
 gi|291470964|gb|EFF13448.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298278727|gb|EFI20241.1| pbpG [Escherichia coli FVEC1302]
 gi|300355321|gb|EFJ71191.1| beta-lactamase [Escherichia coli MS 198-1]
 gi|300452239|gb|EFK15859.1| beta-lactamase [Escherichia coli MS 116-1]
 gi|315061445|gb|ADT75772.1| D-alanyl-D-alanine endopeptidase [Escherichia coli W]
 gi|320178919|gb|EFW53882.1| Murein-DD-endopeptidase [Shigella boydii ATCC 9905]
 gi|320192249|gb|EFW66894.1| Murein-DD-endopeptidase [Escherichia coli O157:H7 str. EC1212]
 gi|320199729|gb|EFW74318.1| Murein-DD-endopeptidase [Escherichia coli EC4100B]
 gi|320657567|gb|EFX25365.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|323936749|gb|EGB33034.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1520]
 gi|324015921|gb|EGB85140.1| beta-lactamase [Escherichia coli MS 117-3]
 gi|324118025|gb|EGC11924.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1167]
 gi|326339477|gb|EGD63288.1| Murein-DD-endopeptidase [Escherichia coli O157:H7 str. 1125]
 gi|326343939|gb|EGD67700.1| Murein-DD-endopeptidase [Escherichia coli O157:H7 str. 1044]
 gi|331059430|gb|EGI31407.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli TA143]
          Length = 313

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 117/278 (42%), Gaps = 26/278 (9%)

Query: 28  IQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQDE-PRYP 77
           + L    L L++ +   A    A             S++++D+N N++      +  R  
Sbjct: 9   VSLFSLALMLAVPLAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPI 68

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           AS++K+MT  ++ +     +L L+ +  + +S+T          ++  +  + +  +L  
Sbjct: 69  ASISKLMTAMVVLDA----RLPLDEKLKVDISQTP-EMKGVYSRVRLNSEISRKDMLLLA 123

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S N  + +      G  K F   M+ KAK +GM NT +   +GL   N ++TARD  
Sbjct: 124 LMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHN-VSTARDLT 182

Query: 196 ILGILLRKNFPQYYKYFSIRK--FRYRNRIIT----NHNKLLNKM-HNIDGIKTGYTRNS 248
            L ++  K +P   +  + R+    + N   T    N N L+ +   NI   KTG+T  +
Sbjct: 183 KL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAA 241

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           G  +V      + P+  VVM           A  L T 
Sbjct: 242 GHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 279


>gi|317056794|ref|YP_004105261.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus
           albus 7]
 gi|315449063|gb|ADU22627.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus
           albus 7]
          Length = 387

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 125/302 (41%), Gaps = 13/302 (4%)

Query: 22  IYIQRNIQLMGKILFLSIIM---------ISMASELHAKPKYSSIVIDVNKNQMTGFKQD 72
           + I R + +    L LS  M         +S+   L+A P    I ++ N  Q+   K  
Sbjct: 1   MAIFRKLFVFILCLILSGCMMSECSFAEKVSVEDMLYAMPAREIIAVECNTGQVLFEKNS 60

Query: 73  -EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
            E    + L K+M + +  E L+S +L L   + VS  A +    +++L +    + E+ 
Sbjct: 61  CEKTEISHLAKLMLVLLAAEKLKSGELSLTDTVTVSANANSMPAPQIWLDKNEKISAEEL 120

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + A+   +AND + A  E I GS       M+ KAK + M+ T Y +  GL D   +  A
Sbjct: 121 LKAITIGNANDAAVALAEHIFGSTDNAVTQMNRKAKLLDMKLTEYADVCGL-DSRTVADA 179

Query: 192 RDQAILGILLRK-NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
            D A L   L K +    Y    I + R     + N N+L+     I G+K   +  +G 
Sbjct: 180 ADTAKLASELVKYDILTDYFKTWIDRVRSGKAELVNLNRLVRTYKGISGMKACSSSAAGE 239

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLK 310
             V +    D  +  VV+G       D  A +L+    +  +L   +   +D L    ++
Sbjct: 240 CSVVTASRGDMEVAVVVLGCTDRSMCDDIAQKLLDMSFDMYSLYTPEIS-EDMLDDIPVE 298

Query: 311 KS 312
             
Sbjct: 299 GG 300


>gi|82777384|ref|YP_403733.1| D-alanyl-D-alanine endopeptidase [Shigella dysenteriae Sd197]
 gi|157159398|ref|YP_001463481.1| D-alanyl-D-alanine endopeptidase [Escherichia coli E24377A]
 gi|161485895|ref|NP_708035.2| D-alanyl-D-alanine endopeptidase [Shigella flexneri 2a str. 301]
 gi|161486468|ref|NP_837752.2| D-alanyl-D-alanine endopeptidase [Shigella flexneri 2a str. 2457T]
 gi|170679983|ref|YP_001742990.1| D-alanyl-D-alanine endopeptidase [Escherichia coli SMS-3-5]
 gi|194436191|ref|ZP_03068293.1| penicillin-binding protein 7 [Escherichia coli 101-1]
 gi|253772938|ref|YP_003035769.1| D-alanyl-D-alanine endopeptidase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|293415418|ref|ZP_06658061.1| D-alanyl-D-alanine endopeptidase [Escherichia coli B185]
 gi|300818866|ref|ZP_07099071.1| beta-lactamase [Escherichia coli MS 107-1]
 gi|300924491|ref|ZP_07140460.1| beta-lactamase [Escherichia coli MS 182-1]
 gi|300929309|ref|ZP_07144783.1| beta-lactamase [Escherichia coli MS 187-1]
 gi|300936551|ref|ZP_07151460.1| beta-lactamase [Escherichia coli MS 21-1]
 gi|300955844|ref|ZP_07168185.1| beta-lactamase [Escherichia coli MS 175-1]
 gi|301021100|ref|ZP_07185141.1| beta-lactamase [Escherichia coli MS 69-1]
 gi|301325244|ref|ZP_07218762.1| beta-lactamase [Escherichia coli MS 78-1]
 gi|301644151|ref|ZP_07244159.1| beta-lactamase [Escherichia coli MS 146-1]
 gi|331642758|ref|ZP_08343893.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli H736]
 gi|331647786|ref|ZP_08348878.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli M605]
 gi|331653562|ref|ZP_08354563.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli M718]
 gi|332278712|ref|ZP_08391125.1| conserved hypothetical protein [Shigella sp. D9]
 gi|405864|gb|AAA60496.1| yohB [Escherichia coli]
 gi|81241532|gb|ABB62242.1| penicillin-binding protein 7 [Shigella dysenteriae Sd197]
 gi|157081428|gb|ABV21136.1| penicillin-binding protein 7 [Escherichia coli E24377A]
 gi|170517701|gb|ACB15879.1| penicillin-binding protein 7 [Escherichia coli SMS-3-5]
 gi|194424919|gb|EDX40904.1| penicillin-binding protein 7 [Escherichia coli 101-1]
 gi|253323982|gb|ACT28584.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|260448770|gb|ACX39192.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Escherichia
           coli DH1]
 gi|281601593|gb|ADA74577.1| D-alanyl-D-alanine endopeptidase precursor [Shigella flexneri
           2002017]
 gi|291433066|gb|EFF06045.1| D-alanyl-D-alanine endopeptidase [Escherichia coli B185]
 gi|300317311|gb|EFJ67095.1| beta-lactamase [Escherichia coli MS 175-1]
 gi|300398281|gb|EFJ81819.1| beta-lactamase [Escherichia coli MS 69-1]
 gi|300419300|gb|EFK02611.1| beta-lactamase [Escherichia coli MS 182-1]
 gi|300458314|gb|EFK21807.1| beta-lactamase [Escherichia coli MS 21-1]
 gi|300462728|gb|EFK26221.1| beta-lactamase [Escherichia coli MS 187-1]
 gi|300528485|gb|EFK49547.1| beta-lactamase [Escherichia coli MS 107-1]
 gi|300847904|gb|EFK75664.1| beta-lactamase [Escherichia coli MS 78-1]
 gi|301077449|gb|EFK92255.1| beta-lactamase [Escherichia coli MS 146-1]
 gi|315136767|dbj|BAJ43926.1| D-alanyl-D-alanine endopeptidase [Escherichia coli DH1]
 gi|320196004|gb|EFW70628.1| Murein-DD-endopeptidase [Escherichia coli WV_060327]
 gi|323961642|gb|EGB57247.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H489]
 gi|323977677|gb|EGB72763.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TW10509]
 gi|324114448|gb|EGC08417.1| D-alanyl-D-alanine carboxypeptidase [Escherichia fergusonii B253]
 gi|325497949|gb|EGC95808.1| D-alanyl-D-alanine endopeptidase [Escherichia fergusonii ECD227]
 gi|330911967|gb|EGH40477.1| murein-DD-endopeptidase [Escherichia coli AA86]
 gi|331039556|gb|EGI11776.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli H736]
 gi|331043510|gb|EGI15648.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli M605]
 gi|331048411|gb|EGI20487.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli M718]
 gi|332101064|gb|EGJ04410.1| conserved hypothetical protein [Shigella sp. D9]
 gi|744172|prf||2014253AF yohB gene
          Length = 313

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 108/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAA 111
           S++++D+N N++      +  R  AS++K+MT  ++ +     +L L+ +  + +S+T  
Sbjct: 45  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDA----RLPLDEKLKVDISQTP- 99

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +      G  K F   M+ KAK +GM
Sbjct: 100 EMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGM 159

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIIT---- 225
            NT +   +GL   N ++TARD   L ++  K +P   +  + R+    + N   T    
Sbjct: 160 NNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFR 217

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L 
Sbjct: 218 NTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLR 277

Query: 285 TS 286
           T 
Sbjct: 278 TW 279


>gi|62180754|ref|YP_217171.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62128387|gb|AAX66090.1| D-alanyl-D-alanine endopeptidase; penicillin-binding protein 7 and
           penicillin-binding protein 8 [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322715229|gb|EFZ06800.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 315

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 108/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNT--QIPVSKTAA 111
           S++++D+N N++      +  R  AS+TK+MT  ++ +     +L L+   ++ +S+T  
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDA----RLPLDEILKVDISQTP- 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +   +  G    F   M+ KAK +GM
Sbjct: 97  EMKGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGM 156

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT-- 225
            +T +   +GL   N ++TARD   L ++  K +P   +  + R+    F +    +   
Sbjct: 157 THTRFVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTREDMATFSHPAYTLPFR 214

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N LL +   NI   KTG+T  +G  +V      + P+  VVM           A  L 
Sbjct: 215 NTNHLLYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLR 274

Query: 285 TS 286
           T 
Sbjct: 275 TW 276


>gi|296136730|ref|YP_003643972.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thiomonas
           intermedia K12]
 gi|295796852|gb|ADG31642.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thiomonas
           intermedia K12]
          Length = 493

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 101/243 (41%), Gaps = 13/243 (5%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D   +++   K  D  R  ASLTK+MT  +I +  Q     ++  I ++      
Sbjct: 215 SALVVDEGTDRVLLSKNADTARPIASLTKLMTAAVILDAHQP----MDQVIEITDADIDT 270

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S   L+  T  T E+ +   +  S N  + A      G    F   M+ KA+ +GM 
Sbjct: 271 LKWSSSRLRPGTKLTREELLKLALMSSENRAAHALARNYPGGLAAFIPAMNAKARSLGMN 330

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRII--TNHN 228
            T Y   +GL      +TA D A+L      ++P   ++ +    +     R +   N +
Sbjct: 331 TTRYVEPTGLS-PQNESTAHDLALLVKAA-YHYPLIREFSTHPESEVEVGPRTLQFRNTD 388

Query: 229 KLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
            L+ N+  +I   KTGY   +G  +V   +++   ++ V++           A  + T  
Sbjct: 389 HLVFNRGWDILLQKTGYINEAGHCLVLQTKFEGRRVIVVLLDAWGKYSHFGDAQRIRTWL 448

Query: 288 LEK 290
             K
Sbjct: 449 EAK 451


>gi|324325393|gb|ADY20653.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 428

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 70/337 (20%), Positives = 137/337 (40%), Gaps = 37/337 (10%)

Query: 22  IYIQRNIQLMGKILFLSIIMISM---------ASELHAKPKYS-------SIVIDVNKNQ 65
           + +++ +  +  I    +  +++           ++   PK         +  ID     
Sbjct: 2   VNLKKILAFITVICLFFLTPMTLRAETNIGVNPEQVAPPPKEGPNVFSQFATTIDAKTGD 61

Query: 66  MTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK--E 122
           +   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S   ++   
Sbjct: 62  VLYDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSNYQIEFQP 116

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
                    ++ L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ +   +GL
Sbjct: 117 GETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGL 176

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLLNKMHNID 238
           HD N  TT  D A++   ++K +P+  +  + ++        T    N +          
Sbjct: 177 HDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYFEN-PFSI 234

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLEKKTL--- 293
           G KTG+T  +   +V       + I+ VVM     +  E  ++  +       K+T+   
Sbjct: 235 GGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMADYSFGQFVKQTVLDK 294

Query: 294 --KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
              HQ+T   +    + L++S  +   K      + I
Sbjct: 295 HSWHQKTTYLNKDIDSELEQSAELMLKKDEGKNVRTI 331


>gi|302385106|ref|YP_003820928.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           saccharolyticum WM1]
 gi|302195734|gb|ADL03305.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           saccharolyticum WM1]
          Length = 479

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 121/299 (40%), Gaps = 45/299 (15%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY---------SSIVIDVNKNQMTGFKQ-DE 73
           + R I+++   + +S + +     ++AKP +         + IVID +   +   +    
Sbjct: 1   MNRRIKVLISCILVSQLFLM---TVYAKPDWPSDTGIQAEAGIVIDGDSGAVLFGQNIHA 57

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTE 129
           P  PAS+TK++T  I+ E        LN  +  SK +       + +KL +      + E
Sbjct: 58  PYPPASITKILTALIVLENAD-----LNDMVTFSKDSVYNVEEGSGNKLNVDTGDKLSVE 112

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
             + +LI  S N  + A  E ++GS + F  +M+ K K++G   + + N SGL+   Q  
Sbjct: 113 DCLYSLILHSCNQAANALAEHVAGSREAFVSMMNEKIKELGCVESHFDNPSGLNGDTQYV 172

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNR----------IITNHNKLLNK------ 233
           TA D A++      N     K   I     RN            I N ++L+        
Sbjct: 173 TAYDMALIAKAAYSN----KKLVEISSAISRNIPPTANNPEGLTIYNEHRLVKTKDTKSE 228

Query: 234 --MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
               +    KTGY   +G  +VT        +++V++   + ++       L+     +
Sbjct: 229 FYCPSAVAGKTGYLIKAGNTLVTYGEQDGKRLISVILKG-SPKQYFIDGKALLEFGFSR 286


>gi|227511580|ref|ZP_03941629.1| possible S11 family D-Ala-D-Ala carboxypeptidase [Lactobacillus
           buchneri ATCC 11577]
 gi|227085225|gb|EEI20537.1| possible S11 family D-Ala-D-Ala carboxypeptidase [Lactobacillus
           buchneri ATCC 11577]
          Length = 442

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 87/364 (23%), Positives = 156/364 (42%), Gaps = 40/364 (10%)

Query: 12  KTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHA-----KPKY-----SSIVIDV 61
           K  +   +      R  +LM  IL L+ ++ ++     A     KPKY        V+D 
Sbjct: 6   KKLMEVTFIMRGTSRLTKLMAVILVLACVIAALVPSATAQAKSKKPKYKFEAKEIYVMDA 65

Query: 62  NKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS---- 116
              QM   K     R  ASL+K+MTLY+  + +   +L  N ++PVSK     + S    
Sbjct: 66  KSGQMLYQKNSHQKRPIASLSKLMTLYLTKKAIDQHQLSWNQKVPVSKPLIKMSKSYELG 125

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTI 175
              +K+   +T +Q   A +  S+N  + A GE ++ GS  KF  LM+ +A+K G+ +  
Sbjct: 126 TFKIKKSKQYTVKQLYQAALIASSNSSAIALGELVAGGSNTKFINLMNRQAQKWGI-DAH 184

Query: 176 YKNASGLHDKN----------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
           + ++SGL + +                 + +A+  + +   +   FP   K+      + 
Sbjct: 185 FVSSSGLDNTDLTTYKLQVPGTGKKAQNMVSAKAISTVAAKVLGEFPSITKWSRKPSMKV 244

Query: 220 RNRIITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            N+++ N N+LL       K  ++DG+KTG+T  +G  +  S  +K   ++A ++   T 
Sbjct: 245 GNQVLVNSNRLLKGDAFYKKSEHVDGLKTGFTDTAGLCLTVSFWHKGRHLIATIIDSNTI 304

Query: 274 QERDQKALELITSFLEKKT-LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
               +K +  I      +T L HQ      N   ++  +       K   S+    D+  
Sbjct: 305 FSSMEKLVRAIEKNYTTETYLIHQNIFTIGNRKVSASPQDSRATIWKTESSKPSISDSYE 364

Query: 333 HSTQ 336
            +TQ
Sbjct: 365 LTTQ 368


>gi|319945575|ref|ZP_08019827.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus australis
           ATCC 700641]
 gi|319748174|gb|EFW00416.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus australis
           ATCC 700641]
          Length = 413

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 67/302 (22%), Positives = 135/302 (44%), Gaps = 31/302 (10%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---- 110
           +I ID    ++   K  DE +    ++ ++T Y+++E +Q  K+ L   + +S  A    
Sbjct: 33  AIAIDGTTGKILYEKNSDEKKEVGGISNLLTTYLVYEAIQQGKISLTDDVDISDKAYQLT 92

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A +  S + ++ +  +  +  + AL+  +AN  + A  E ++GSE+KF +LM  K K+ G
Sbjct: 93  AIEGISNVPMEAR-KYKVKDLLTALLVSNANSAAIALAEKVAGSEEKFVLLMKAKLKEWG 151

Query: 171 MQNTIYKNASGLH----DKNQIT---------TARDQAILGILLRKNFPQYYKYFSIRKF 217
           + +    NASGL+    D ++           +A D A++   L +++P+  K  S+   
Sbjct: 152 ITDATIVNASGLNQSIIDGDEENKKKNNENKLSAYDVAVIAKHLLEDYPEVTKITSLSHA 211

Query: 218 RYRNRIITNHNKLLNKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP-- 271
            +    + + N +L  M      +DG+KTG +   G + V S       ++ VV+G+   
Sbjct: 212 EFAGIQLESSNYMLENMPNYRAGVDGLKTGNSEKGGISFVASTNQNGIRMITVVIGVEAI 271

Query: 272 --TSQERDQKALELIT----SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQF 325
                 R      L+     +F+    +   +T+     +    KK+ +I   K  +   
Sbjct: 272 DGDPYARFVTTANLMNYVSQNFVANLIVSKGETYNNSKSTVLDGKKTSVIAVAKDDFIVI 331

Query: 326 KK 327
           ++
Sbjct: 332 ER 333


>gi|146319524|ref|YP_001199236.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis 05ZYH33]
 gi|145690330|gb|ABP90836.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis 05ZYH33]
          Length = 415

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 61/299 (20%), Positives = 136/299 (45%), Gaps = 28/299 (9%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASL 80
           + +++ +  +  IL + +    + +E  +     +I ++V+  ++   +  E +   AS+
Sbjct: 1   MIMRKLLLTLTTILAVFLTSTPILAEDFSVAAKHAIAVEVSSGKILYEQDAETKASIASI 60

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALI 136
           +K +++Y+++E L   ++ LNT + +S    +       S + L E++Y +    + A +
Sbjct: 61  SKTLSIYLVYEALAKGEITLNTMVDISDYPYSLTSNTELSNVNLDERSY-SVRDLLNASL 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN---------- 186
             S+N    A  E I+GSE  F   M  K ++ G+ +T   N SGL + +          
Sbjct: 120 ITSSNSAIIALAEKIAGSEAAFVDRMKAKVQEWGITDTKIVNVSGLDNTDLGENIYPGSS 179

Query: 187 ----QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM----HNID 238
                + +A D AI+   L  ++PQ     S+  + +      + N++L+        +D
Sbjct: 180 PEDVNMFSALDVAIIARRLILDYPQVLDITSLNAYDFGGYTYYSTNQMLSDGTHARGGVD 239

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVM----GMPTSQERDQKALELITSFLEKKTL 293
           G+KTG + ++G + + + +     I+ VV+    G+ + + R     +L+       +L
Sbjct: 240 GLKTGTSNSAGSSFLATTQQAGMRIITVVLNANDGLTSPENRFVATNDLMNYVYSNFSL 298


>gi|229149576|ref|ZP_04277808.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
 gi|228633922|gb|EEK90519.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
          Length = 405

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 69/284 (24%), Positives = 121/284 (42%), Gaps = 21/284 (7%)

Query: 59  IDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K      YPAS TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 32  IDAKTGDVLYDKNAYHRAYPASTTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 86

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ KAK++G +++ 
Sbjct: 87  YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSH 146

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  + ++        T    N +   
Sbjct: 147 FVTPNGLHDPNHYTTPYDMAMITKGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSNFF 205

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I++VVM     +  E  ++  E       
Sbjct: 206 EN-PYSIGGKTGFTNEARNTLVLLNEKDGNRIISVVMASQRPEIYEDLKQMAEYSFGQFT 264

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           K+ +      HQ+T   +   ++ L++S  +   K      K I
Sbjct: 265 KQMVLDKHNWHQKTTYLNKDVNSELEQSAELMLKKDEGKNVKTI 308


>gi|301629534|ref|XP_002943893.1| PREDICTED: d-alanyl-D-alanine endopeptidase-like [Xenopus
           (Silurana) tropicalis]
          Length = 356

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 59/234 (25%), Positives = 100/234 (42%), Gaps = 13/234 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++VID N +++   K D+   P ASLTK+MT  +I E      L ++  + +++      
Sbjct: 114 ALVIDQNTHEVLLSKNDKAVLPIASLTKLMTGLLISEAH----LSMDEPLTITQDDVDTE 169

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+  L   T  T  + +   +  S N  + A G    G    F   M+ KA+++GM +
Sbjct: 170 KGSRSRLSVGTTLTRGEMLHLALMSSENRAAHALGRTYPGGLGAFVARMNAKARQLGMTD 229

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T Y   +GL   NQ ++ARD A L  +   + P   +  +   +      R     N N+
Sbjct: 230 TRYVEPTGLSSHNQ-SSARDLATLVNVAHGD-PLLRELSTSPGYEVAVGRRTLQFNNTNR 287

Query: 230 LLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           L++    +I   KTGY   +G  +V   +     I+ V +       R   A  
Sbjct: 288 LVSSPAWDIGLQKTGYIAEAGRCLVMQAQVAGRQIIMVFLDSAGKFSRLGDAER 341


>gi|218231015|ref|YP_002366059.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           B4264]
 gi|218158972|gb|ACK58964.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus B4264]
          Length = 428

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 68/284 (23%), Positives = 121/284 (42%), Gaps = 21/284 (7%)

Query: 59  IDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K      YPAS TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 55  IDAKTGDVLYDKNAYHRAYPASTTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 109

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ KAK++G +++ 
Sbjct: 110 YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSH 169

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  + ++        T    N +   
Sbjct: 170 FVTPNGLHDPNHYTTPYDMAMITKGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSNFF 228

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I++VVM     +  E  ++  +       
Sbjct: 229 EN-PYSIGGKTGFTNEARNTLVLLNEKDGNRIISVVMASQRPEIYEDLKQMADYSFGQFT 287

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           K+ +      HQ+T   +   ++ L++S  +   K      K I
Sbjct: 288 KQMVLDKHNWHQKTTYLNKDVNSELEQSAELMLKKDEGKNVKTI 331


>gi|187732796|ref|YP_001879537.1| D-alanyl-D-alanine endopeptidase [Shigella boydii CDC 3083-94]
 gi|187429788|gb|ACD09062.1| penicillin-binding protein 7 [Shigella boydii CDC 3083-94]
          Length = 313

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 63/278 (22%), Positives = 116/278 (41%), Gaps = 26/278 (9%)

Query: 28  IQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQDE-PRYP 77
           + L    L L++ +   A    A             S++++D+N N++      +  R  
Sbjct: 9   VSLFSLALMLAVPLAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPI 68

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           AS++K+MT  ++ +     +L L+ +  + +S+T          ++  +  + +  +L  
Sbjct: 69  ASISKLMTAMVVLDA----RLPLDEKLKVDISQTP-EMKGVYSRVRLNSEISRKDMLLLA 123

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S N  + +      G  K F   M+ KAK +GM NT +   +GL   N ++TARD  
Sbjct: 124 LMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHN-VSTARDLT 182

Query: 196 ILGILLRKNFPQYYKYFSIRK----FRYRNRIIT--NHNKLLNKM-HNIDGIKTGYTRNS 248
            L ++  K +P   +  + R+    F      +   N N L+ +   NI   KTG+T  +
Sbjct: 183 KL-LIASKQYPLIGQLSTTREDMAIFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAA 241

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           G  +V      + P+  VVM           A  L T 
Sbjct: 242 GHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 279


>gi|332851496|ref|ZP_08433493.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6013150]
 gi|332866804|ref|ZP_08437208.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6013113]
 gi|194474667|gb|ACF74453.1| D-alanyl-D-alanine endopeptidase penicillin-binding protein 7/8
           [Acinetobacter baumannii]
 gi|332729949|gb|EGJ61280.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6013150]
 gi|332734412|gb|EGJ65532.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6013113]
          Length = 340

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 111/253 (43%), Gaps = 18/253 (7%)

Query: 49  HAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +A+P  S+   +V+D    ++   K  +     AS+TK+MT  +  +     +L+++ +I
Sbjct: 89  NAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKLMTAVVTADA----RLNMSEEI 144

Query: 105 PVSKTAATQNP---SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
            + +          S   L+        + +L  + +S N  + A      G    F   
Sbjct: 145 TLEQIDFAGAGGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAA 204

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR- 220
           M+ KA+ +GM  T Y  ++GL D   +++ARD  IL     + +    ++ +   + +  
Sbjct: 205 MNAKARALGMNATHYYESTGL-DPRNVSSARDLGILASTASQ-YGLIRQFSTTPTYDFNL 262

Query: 221 -NRII--TNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
             R++   N N L+ N   NI+  KTGY   +G  +V        P V V++G P++Q R
Sbjct: 263 GYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEPSTQAR 322

Query: 277 DQKALELITSFLE 289
           +  A  L+     
Sbjct: 323 NNDATNLLGWLSN 335


>gi|295110005|emb|CBL23958.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162]
          Length = 378

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 110/248 (44%), Gaps = 25/248 (10%)

Query: 57  IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-QN 114
           +++D+    +   K   E  YPAS+TK++T  + F     K  +++  + +S+   T + 
Sbjct: 133 VLLDLKDKSVLFAKGAYERVYPASITKIITALLAF-----KNSNMDDVVTISQENITLEE 187

Query: 115 PSKL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
            S++   +E    T +Q +  L+  S ND ++A    + G+ + F  +M+  A ++G   
Sbjct: 188 GSQVVGFQEGDQVTMDQLVHCLLVYSGNDAASAIATHVGGTTENFVSMMNEYAAQLGCTG 247

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR---------NRII 224
           T + N  GL D+N  TT  D  ++      N+P++ +   +  +            +  +
Sbjct: 248 THFTNPHGLQDENHYTTPYDIYLMLKEAL-NYPEFTEITQMPSYTVTFTHSDGSEESVAL 306

Query: 225 TNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYK-DDPIVAVVMGMPTSQERD 277
           T  +  L    N      + G KTG T ++G  +    +     P +++VMG  + +   
Sbjct: 307 TATDHYLTGEANVPKGVTVLGGKTGTTNSAGNCLALLSQNSYGSPYISIVMGASSKELLY 366

Query: 278 QKALELIT 285
           Q+   L+ 
Sbjct: 367 QQMTSLLE 374


>gi|229029046|ref|ZP_04185145.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
 gi|228732326|gb|EEL83209.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
          Length = 407

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 121/287 (42%), Gaps = 21/287 (7%)

Query: 56  SIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +  ID     +   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q 
Sbjct: 31  ATAIDAKTGDVLYDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQE 85

Query: 115 PSKLYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
            S   ++            ++ L+  SANDVS A  E I GS + FA +M+ +AK++G  
Sbjct: 86  KSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFAHMMNERAKQLGAT 145

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHN 228
           ++ +   +GLHD N  TT  D A++   ++K +P+  +  + ++        T    N +
Sbjct: 146 DSHFVTPNGLHDPNHYTTPFDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKS 204

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITS 286
                     G KTG+T  +   +V       + I+ VVM     +  E  ++  +    
Sbjct: 205 TYFEN-PYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMADYSFG 263

Query: 287 FLEKKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
              K+T+      HQ+    +    + L+KS  +   K      + I
Sbjct: 264 QFVKQTVLDKHSWHQKATYLNKDIDSELEKSAELMLKKDEGKNVRTI 310


>gi|332161016|ref|YP_004297593.1| D-alanyl-D-alanine endopeptidase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665246|gb|ADZ41890.1| D-alanyl-D-alanine endopeptidase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 311

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 63/264 (23%), Positives = 106/264 (40%), Gaps = 20/264 (7%)

Query: 38  SIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFE 91
           + I    ASE+  K        S++V+D+  N++      DE    AS+TK+MT  ++ +
Sbjct: 24  TAIASGGASEVKGKAPLELASGSAMVVDLQTNKVIYANNADEVVPIASITKLMTAMVVLD 83

Query: 92  YLQSKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
                KL L+  I V              ++  +  + +  +L  +  S N  + +    
Sbjct: 84  A----KLPLDEIISVDIHQTKEMKGVFSRVRVNSEISRKDMLLLALMSSENRAAASLAHH 139

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
             G    F   M+ KAK +GM  T Y   +GL   N ++TARD   L ++  K +P   +
Sbjct: 140 YPGGYNAFINAMNAKAKSLGMTKTRYVEPTGLSI-NNVSTARDLTKL-LIATKQYPLIGQ 197

Query: 211 YFSIRK----FRYRNRIIT--NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
             +  +    FR  N  +   N N L+     NI   KTG+T  +G  +       + P+
Sbjct: 198 LSTTTEKMATFREPNYTLPFRNTNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPV 257

Query: 264 VAVVMGMPTSQERDQKALELITSF 287
             VV+           A  L +  
Sbjct: 258 ALVVLDAFGKYTHFADANRLRSWM 281


>gi|291546150|emb|CBL19258.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. SR1/5]
          Length = 388

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 58/270 (21%), Positives = 117/270 (43%), Gaps = 26/270 (9%)

Query: 37  LSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQ 94
           L ++   +A   +      S ++++++  ++   K      YPAS+TK+MT  +  +Y  
Sbjct: 123 LCVVTKDVALDSVSLDDSQSGVLLNLSDKKVLYAKGAYNKVYPASITKIMTAMLALKYG- 181

Query: 95  SKKLHLNTQIPVS-KTAATQNPSKL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
               +++  + +S +    ++ S++   +     T +Q +  L+  SAND ++A  E I 
Sbjct: 182 ----NMDDTVTISQENVTLESGSQVAGFQAGDQVTMDQLLHCLLVYSANDAASAIAEHIG 237

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           GS  KF  +M++ A ++G   T + N  GL D+N  TT  D  ++      N+P++    
Sbjct: 238 GSTDKFVEMMNSFAAELGCTGTHFTNPHGLQDENHYTTPYDIYLMLKEAL-NYPEFTDIT 296

Query: 213 SIRKFRYRNR---------IITNHNKLLN------KMHNIDGIKTGYTRNSGFNIVTSLR 257
            +  +    +          +   +  L       K   I G KTG T  +G  +    +
Sbjct: 297 QMASYTVSYKHSDGSDASATLPATDHYLTGEAATPKDVTILGGKTGTTDKAGNCLALLSQ 356

Query: 258 YK-DDPIVAVVMGMPTSQERDQKALELITS 286
                P +++VMG  +     Q+   L+ +
Sbjct: 357 NAYGKPFISIVMGASSKDVLYQEMTSLLQN 386


>gi|184156580|ref|YP_001844919.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii ACICU]
 gi|332874936|ref|ZP_08442787.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6014059]
 gi|183208174|gb|ACC55572.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii ACICU]
 gi|332736879|gb|EGJ67855.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
           6014059]
          Length = 340

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 111/253 (43%), Gaps = 18/253 (7%)

Query: 49  HAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +A+P  S+   +V+D    ++   K  +     AS+TK+MT  +  +     +L+++ +I
Sbjct: 89  NAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKLMTAVVTADA----RLNMSEEI 144

Query: 105 PVSKTAATQNP---SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
            + +          S   L+        + +L  + +S N  + A      G    F   
Sbjct: 145 TLEQIDFAGAGGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAA 204

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR- 220
           M+ KA+ +GM  T Y  ++GL D   +++ARD  IL     + +    ++ +   + +  
Sbjct: 205 MNAKARALGMNATHYYESTGL-DPRNVSSARDLGILASTASQ-YGLIRQFSTTPTYDFNL 262

Query: 221 -NRII--TNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
             R++   N N L+ N   NI+  KTGY   +G  +V        P V V++G P++Q R
Sbjct: 263 GYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEPSTQAR 322

Query: 277 DQKALELITSFLE 289
           +  A  L+     
Sbjct: 323 NNDATNLLGWLSN 335


>gi|154483287|ref|ZP_02025735.1| hypothetical protein EUBVEN_00988 [Eubacterium ventriosum ATCC
           27560]
 gi|149735797|gb|EDM51683.1| hypothetical protein EUBVEN_00988 [Eubacterium ventriosum ATCC
           27560]
          Length = 345

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 108/269 (40%), Gaps = 34/269 (12%)

Query: 49  HAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS 107
            A    ++I+++VN  ++   K  D   YPAS TK+MT   + + +++        + + 
Sbjct: 83  QAISAKAAILVNVNSKEIYYEKNSDAKMYPASTTKLMTALTVLQNMKT-----TDIVTIG 137

Query: 108 K--TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI-------------- 151
                   + SK    +    T ++ +  L+  S ND +    +                
Sbjct: 138 SEINMIAADSSKAGFSQGQVVTVQELLEGLLISSGNDAAYVLAKAAGEAILKDNIANEGK 197

Query: 152 ----SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--F 205
               +   ++F   M+   + + ++NT + +  G    +Q T+A D + + I    N   
Sbjct: 198 TFTAAQCVERFVYEMNKNVRDMELENTHFMSPDGYDAADQYTSASDLSKIAIEAYNNETI 257

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKD 260
            +     S +     N+   + N LL+K          G+KTG T  +G  +V+  +  D
Sbjct: 258 RKICGTQSEKSGTL-NKTWVSTNALLDKSGQFYYQYCVGMKTGSTGLAGKCLVSVAKNGD 316

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLE 289
              ++VV+   T ++R   A +L+   +E
Sbjct: 317 TECISVVLNDSTDEQRWTDAKKLLKFGVE 345


>gi|262373941|ref|ZP_06067218.1| D-alanyl-D-alanine endopeptidase [Acinetobacter junii SH205]
 gi|262310952|gb|EEY92039.1| D-alanyl-D-alanine endopeptidase [Acinetobacter junii SH205]
          Length = 353

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 106/243 (43%), Gaps = 15/243 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             +++V+D    ++   K        AS+TK+MT  +  +     +L ++ +I + +   
Sbjct: 109 ARAALVMDAQTGEVLYSKNSSLAVPIASITKVMTAVVTADA----RLDMSEEITLQQIDF 164

Query: 112 TQNP---SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                  S   L+        + +L  + +S N  + A      G    F   M+ KA++
Sbjct: 165 AGAGGKNSSSTLRAGDTMNRAELLLFALMKSENPAAAALARTYPGGRSAFVAAMNAKARQ 224

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR--NRII-- 224
           +GM +T Y  ++GL D + +++ARD  IL     + +    ++ +   + +    R++  
Sbjct: 225 LGMTSTRYAESTGL-DPHNVSSARDLGILVSAASQ-YGLIRQFSTTPTYDFNLGYRVLKS 282

Query: 225 TNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            N N L+ N   NI+  KTGY   +G  +V        P V V++G  TSQ R   A  L
Sbjct: 283 NNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVVVLLGASTSQARTNDATNL 342

Query: 284 ITS 286
           +  
Sbjct: 343 LNW 345


>gi|325695651|gb|EGD37551.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK150]
          Length = 422

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 67/348 (19%), Positives = 140/348 (40%), Gaps = 47/348 (13%)

Query: 31  MGKILFLSIIMISMASELHAK-----PKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMM 84
           M ++    ++++ M +   A         S++ +D    ++   K    P    S+T ++
Sbjct: 1   MKRLFLCLLVLVGMTANKVAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLL 60

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALITRSA 140
           T+Y+++E +    L  +T + +S  A +     N S + L+ K  +  +  I A +  S+
Sbjct: 61  TVYLVYEAIDRGDLTADTYVDISDYAYSLTSNPNISNVPLEAK-RYKVKDLIAASLMSSS 119

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------------- 183
           N  + A  E + GSE+ F  +M  K K+ G+++    N++GL+                 
Sbjct: 120 NSATIALAEKVGGSEENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYSASA 179

Query: 184 -------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL----N 232
                  D     +A D A++   L  +FPQ     S    +     + N+N +L    N
Sbjct: 180 STSKKSKDTENKFSAYDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSN 239

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELIT--- 285
               +DG+K G +   G + V +       ++ VV+ +         R      L+    
Sbjct: 240 FRSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVLDVEQTDGDPYARFVATASLMNYVS 299

Query: 286 -SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
            +F +   +   +T+ K N +    K+  +     + ++  ++I  +A
Sbjct: 300 QNFTQTTIVAEGETYNKSNSTVIDGKQKTVPAVASKDFTIIERIANQA 347


>gi|332754764|gb|EGJ85129.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri 4343-70]
          Length = 301

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 108/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAA 111
           S++++D+N N++      +  R  AS++K+MT  ++ +     +L L+ +  + +S+T  
Sbjct: 32  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDA----RLPLDEKLKVDISQTP- 86

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +      G  K F   M+ KAK +GM
Sbjct: 87  EMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGM 146

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIIT---- 225
            NT +   +GL   N ++TARD   L ++  K +P   +  + R+    + N   T    
Sbjct: 147 NNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFR 204

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L 
Sbjct: 205 NTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLR 264

Query: 285 TS 286
           T 
Sbjct: 265 TW 266


>gi|191170132|ref|ZP_03031686.1| penicillin-binding protein 7 [Escherichia coli F11]
 gi|190909648|gb|EDV69233.1| penicillin-binding protein 7 [Escherichia coli F11]
          Length = 297

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 62/270 (22%), Positives = 115/270 (42%), Gaps = 29/270 (10%)

Query: 39  IIMISMASELHAK------------PKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMT 85
           ++ +  A +  AK               S++++D+N N++      +  R  AS++K+MT
Sbjct: 1   MLAVPFAPQAVAKTVAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASISKLMT 60

Query: 86  LYIIFEYLQSKKLHLNTQ--IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
             ++ +     +L L+ +  + +S+T          ++  +  + +  +L  +  S N  
Sbjct: 61  AMVVLDA----RLPLDEKLKVDISQTP-EMKGVYSRVRLNSEISRKDMLLLALMSSENRA 115

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           + +      G  K F   M+ KAK +GM NT +   +GL   N ++TARD   L ++  K
Sbjct: 116 AASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASK 173

Query: 204 NFPQYYKYFSIRK--FRYRNRIIT----NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSL 256
            +P   +  + R+    + N   T    N N L+ +   NI   KTG+T  +G  +V   
Sbjct: 174 QYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRT 233

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITS 286
              + P+  VVM           A  L T 
Sbjct: 234 VINNKPVALVVMDAFGKYTHFADASRLRTW 263


>gi|328944931|gb|EGG39089.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK1087]
          Length = 422

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 69/348 (19%), Positives = 140/348 (40%), Gaps = 47/348 (13%)

Query: 31  MGKILFLSIIMISMASELHAK-----PKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMM 84
           M ++    ++++ M +   A         S+I +D    ++   K    P    S+T ++
Sbjct: 1   MKRLFLCLLVLVGMTASKVAADDFNIAAKSAIAVDATSGKILYEKDANTPIEVGSITNLL 60

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALITRSA 140
           T+Y+++E +    L  +T + +S  A T     N S + L+ K  +  +  I A +  S+
Sbjct: 61  TVYLVYEAIDRGDLTADTYVDISDYAYTLTSNPNISNVPLEAK-RYKAKDLIAASLMSSS 119

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------------- 183
           N  + A  E + GSE+ F  +M  K K+ G+++    N++GL+                 
Sbjct: 120 NSATIALAEKVGGSEENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYSASA 179

Query: 184 -------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL----N 232
                  D     +A D A++   L  +FPQ     S    +     + N+N +L    N
Sbjct: 180 STSKKSKDTENKFSAYDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSN 239

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELIT--- 285
               +DG+K G +   G + V +       ++ VV+ +         R      L+    
Sbjct: 240 FRSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVLDVEQTDGDPYARFVATASLMNYVS 299

Query: 286 -SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
            +F +   +   +T+ K N +    K+  +     + ++  ++I  +A
Sbjct: 300 QNFTQTTIVAEGETYNKSNSTVIDGKQKTVPAVASKDFTIIERIANQA 347


>gi|224477927|ref|YP_002635533.1| penicillin binding protein 4 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222422534|emb|CAL29348.1| penicillin binding protein 4 [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 409

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 77/344 (22%), Positives = 151/344 (43%), Gaps = 43/344 (12%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP----------------KYSSIVIDVNKNQMT 67
           + + + ++   L L  + I+  +     P                  S+ VI   + Q+ 
Sbjct: 1   MNKVLSIVFSFLLLWTLFITPNTYAQQTPTEIAKQHHQPLNTQYNPKSAYVI-TQQGQIL 59

Query: 68  G-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKE 122
             +  ++   PAS TK+MT+Y++ E ++  K+  +  + ++    K A   N +   LK 
Sbjct: 60  YDYHGNQSIDPASTTKLMTVYLVLEAIEQGKIKPSDSVKITPSYEKLAQLPNLTTFPLKN 119

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
           K  +T +Q +   +  S+N  +    + +SG   KF   M+ KAK++GM+++ + N SG 
Sbjct: 120 KQTYTIDQLLKQAMLESSNAATLVLADKLSGDTSKFTDNMNAKAKELGMKHSHFTNPSGA 179

Query: 183 HD--------------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           ++                  +TA+D  IL   + KN+P+  +Y S++  +   + +TN N
Sbjct: 180 NNLLIQQFAPKAYKSETFSHSTAQDMTILSKAIIKNYPKVLQYSSLKTDQQYGKKLTNTN 239

Query: 229 KLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM-PTSQERDQKALEL 283
             L    + ++   G+KTG T ++G+N+V + +  +  I   VM + P   E  + A + 
Sbjct: 240 LSLPGSQDALNGAQGLKTG-TSDNGYNLVLTTKRNNLRIDTTVMNVQPYPSETSKHARQK 298

Query: 284 ITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
           I + L +   KH +  +  +     L       K +  Y    K
Sbjct: 299 IANALTEDAYKHYEYRKVISKGEHELDGKTYDVK-QDLYDVVPK 341


>gi|298241559|ref|ZP_06965366.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
           racemifer DSM 44963]
 gi|297554613|gb|EFH88477.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
           racemifer DSM 44963]
          Length = 313

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 96/244 (39%), Gaps = 15/244 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+ +ID   N++      +     AS TK+MT  +  E       +L+  + V +    Q
Sbjct: 73  SAYIIDNANNRVLFDSDSQRSVPIASTTKIMTAVVTIE-----NSNLDQIVTVQQADLDQ 127

Query: 114 ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S   L    Y      +  L+  S +D +      + GS   F  +M+ KA+ +G
Sbjct: 128 LPPEASVAQLHVGDYLRIRHLLYGLLLPSGSDAALTLARVVGGSTDGFVAMMNAKAQALG 187

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRK--NFPQYYKY--FSIRKFRYRNRI-IT 225
           + +T + +  G+      ++A+D   L     +   F +  +   + I   +Y  R    
Sbjct: 188 LAHTHFSSPHGVIPDGNYSSAQDLVKLARYAMRYQIFAEIVRQTEYHIPPTQYNRRYDWY 247

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE-RDQKALELI 284
           N N+LL     + GIKTG    +G+ +V +    +  +    +G P S +  +     L+
Sbjct: 248 NTNQLLTSYSGVIGIKTGSGSGAGYCVVFAAVRNNRLLYGAELGAPGSFDVLNSDVTRLL 307

Query: 285 TSFL 288
               
Sbjct: 308 DKAF 311


>gi|310828855|ref|YP_003961212.1| hypothetical protein ELI_3287 [Eubacterium limosum KIST612]
 gi|308740589|gb|ADO38249.1| hypothetical protein ELI_3287 [Eubacterium limosum KIST612]
          Length = 543

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 81/309 (26%), Positives = 126/309 (40%), Gaps = 44/309 (14%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLT 81
           ++ I ++G +L +     S A        P    +V +VN   +   +  DE  YPAS T
Sbjct: 3   RKIISVLGALLLVFGGFGSSAWAAMPSFGPDEGVVVFEVNSGDVLVEQNADERYYPASTT 62

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRS 139
           K+MT     +Y+ S    LN ++ V           S  +L+    +T EQ + AL+  S
Sbjct: 63  KLMTALTALDYVGS---SLNDKVTVGDEVKLIGYESSVAHLEVGEIYTWEQLLYALLLPS 119

Query: 140 ANDVSTAFGEFI----SGSEKK--------FAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
            ND +      I    SG+EK         F   M+ KA+++G++NT +KNA GLHD + 
Sbjct: 120 GNDAANVIAANIGRKISGNEKMDYNQAMSVFVDQMNAKAQQMGLKNTHFKNAHGLHDPDH 179

Query: 188 ITTARDQAILGILLRKNFP----QYYKYFSIRKFRYRNRIITNHNKLL------------ 231
            TT  D A++G     N      +  K + +   R   +   N + LL            
Sbjct: 180 YTTPADMAVIGKTAFTNETISKVEGTKVYEMTTNRGEPQKWKNTDMLLYKDAADYGGTIE 239

Query: 232 -----NKMHN--IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
                N  +N    G KTG T  +G   V +    D  IV V+M     +    +A   I
Sbjct: 240 EGRTDNPYYNAKAKGGKTGNTDEAGRCFVYNAEDGDAKIVGVIMKGD-EKGIFAEASNTI 298

Query: 285 TSFLEKKTL 293
            +  +   L
Sbjct: 299 NAAFDDNRL 307


>gi|229160328|ref|ZP_04288326.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
 gi|228623052|gb|EEK79880.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
          Length = 407

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 122/287 (42%), Gaps = 21/287 (7%)

Query: 56  SIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +  +D     M   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q 
Sbjct: 31  AATVDAKTGDMLYDKNARHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQE 85

Query: 115 PSKLYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
            S   ++            ++ L+  SANDVS A  E I GS + FA +M+ KAK++G  
Sbjct: 86  KSNYQIEFQPGETIDRNTALMILMVLSANDVSFAIAEHIGGSVENFANMMNEKAKQLGAT 145

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHN 228
           ++ +   +GLHD N  TT  D A++   ++K +P+  +  + ++        T    N +
Sbjct: 146 DSHFVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRISVTTSRQTVSIFNKS 204

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITS 286
                     G KTG+T  +   +V       + I+ VVM     +  E  ++  E    
Sbjct: 205 TYFEN-PYSMGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMAEYSFG 263

Query: 287 FLEKKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
              K+T+      HQ+T   +    + L+KS  +   K      + I
Sbjct: 264 QFVKQTVLDKQSWHQKTTYLNKDIDSELEKSAELMLKKDEGKNVRTI 310


>gi|169634636|ref|YP_001708372.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter baumannii
           SDF]
 gi|169153428|emb|CAP02565.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter baumannii]
          Length = 348

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 110/253 (43%), Gaps = 18/253 (7%)

Query: 49  HAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +A+P  S+   +V+D    ++   K  +     AS+TK+MT  +  +     +L+++ +I
Sbjct: 97  NAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKLMTAVVTADA----RLNMSEEI 152

Query: 105 PVSKTAATQNP---SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
            + +          S   L+        + +L  + +S N  + A      G    F   
Sbjct: 153 TLEQIDFAGAGGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAA 212

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR- 220
           M+ KA  +GM  T Y  ++GL D   +++ARD  IL     + +    ++ +   + +  
Sbjct: 213 MNAKAHALGMNATHYYESTGL-DPRNVSSARDLGILASTASQ-YGLIRQFSTTPTYDFNL 270

Query: 221 -NRII--TNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
             R++   N N L+ N   NI+  KTGY   +G  +V        P V V++G P++Q R
Sbjct: 271 GYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEPSTQAR 330

Query: 277 DQKALELITSFLE 289
           +  A  L+     
Sbjct: 331 NNDATNLLGWLSN 343


>gi|260495307|ref|ZP_05815434.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp. 3_1_33]
 gi|260197085|gb|EEW94605.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp. 3_1_33]
          Length = 418

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 71/256 (27%), Positives = 122/256 (47%), Gaps = 12/256 (4%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++++   K  +   K  +  YP AS+TKMM+L + F+ + +  + LN  + +SKT     
Sbjct: 165 AVIVGDTKGNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGNISLNDSVRISKTPLKYG 224

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQN 173
            S + LK    F  E  I A    SAN+ + A  E++  GS   F   M+ K +++G+QN
Sbjct: 225 GSGIALKAGQMFILEDLIKAAAVYSANNATYAIAEYVGNGSIFGFVTKMNKKLRELGLQN 284

Query: 174 -TIYKNASGLHD-----KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIIT 225
              Y   +GL            TAR    L I   K + +Y +   I+  +  N    I 
Sbjct: 285 EIKYHTPAGLPTRVTKQPMDEGTARGIYKLSIEALK-YKKYIEIAGIKTTKIHNDKISIR 343

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N N L+ + + + GIKTG+ + + +NI  + +++   ++ VV+G  T + RD     ++ 
Sbjct: 344 NRNHLIGE-NGVYGIKTGFHKEAKYNIAVASKFEGTDVIIVVLGGETYKTRDNLVRNILN 402

Query: 286 SFLEKKTLKHQQTHRK 301
              E  T+K+    RK
Sbjct: 403 ILSENYTVKNGLIKRK 418


>gi|322506467|gb|ADX01921.1| pbpG [Acinetobacter baumannii 1656-2]
 gi|323516346|gb|ADX90727.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 335

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 111/253 (43%), Gaps = 18/253 (7%)

Query: 49  HAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +A+P  S+   +V+D    ++   K  +     AS+TK+MT  +  +     +L+++ +I
Sbjct: 84  NAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKLMTAVVTADA----RLNMSEEI 139

Query: 105 PVSKTAATQNP---SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
            + +          S   L+        + +L  + +S N  + A      G    F   
Sbjct: 140 TLEQIDFAGAGGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAA 199

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR- 220
           M+ KA+ +GM  T Y  ++GL D   +++ARD  IL     + +    ++ +   + +  
Sbjct: 200 MNAKARALGMNATHYYESTGL-DPRNVSSARDLGILASTASQ-YGLIRQFSTTPTYDFNL 257

Query: 221 -NRII--TNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
             R++   N N L+ N   NI+  KTGY   +G  +V        P V V++G P++Q R
Sbjct: 258 GYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEPSTQAR 317

Query: 277 DQKALELITSFLE 289
           +  A  L+     
Sbjct: 318 NNDATNLLGWLSN 330


>gi|213155690|ref|YP_002317735.1| D-alanyl-D-alanine carboxypeptidase family protein [Acinetobacter
           baumannii AB0057]
 gi|215484932|ref|YP_002327171.1| Penicillin-binding protein 7 precursor (PBP-7) [Acinetobacter
           baumannii AB307-0294]
 gi|239502064|ref|ZP_04661374.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter baumannii
           AB900]
 gi|301346537|ref|ZP_07227278.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter baumannii
           AB056]
 gi|301512073|ref|ZP_07237310.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter baumannii
           AB058]
 gi|301594839|ref|ZP_07239847.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter baumannii
           AB059]
 gi|213054850|gb|ACJ39752.1| D-alanyl-D-alanine carboxypeptidase family protein [Acinetobacter
           baumannii AB0057]
 gi|213986566|gb|ACJ56865.1| Penicillin-binding protein 7 precursor (PBP-7) [Acinetobacter
           baumannii AB307-0294]
          Length = 335

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 111/253 (43%), Gaps = 18/253 (7%)

Query: 49  HAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +A+P  S+   +V+D    ++   K  +     AS+TK+MT  +  +     +L+++ +I
Sbjct: 84  NAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKLMTAVVTADA----RLNMSEEI 139

Query: 105 PVSKTAATQNP---SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
            + +          S   L+        + +L  + +S N  + A      G    F   
Sbjct: 140 TLEQIDFAGAGGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAA 199

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR- 220
           M+ KA+ +GM  T Y  ++GL D   +++ARD  IL     + +    ++ +   + +  
Sbjct: 200 MNAKARALGMNATHYYESTGL-DPRNVSSARDLGILASTASQ-YGLIRQFSTTPTYDFNL 257

Query: 221 -NRII--TNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
             R++   N N L+ N   NI+  KTGY   +G  +V        P V V++G P++Q R
Sbjct: 258 GYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEPSTQAR 317

Query: 277 DQKALELITSFLE 289
           +  A  L+     
Sbjct: 318 NNDATNLLGWLSN 330


>gi|302379860|ref|ZP_07268343.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312338|gb|EFK94336.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
           ACS-171-V-Col3]
          Length = 384

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 138/299 (46%), Gaps = 17/299 (5%)

Query: 34  ILFLSIIMISMASELHAKPKY-----SSIVIDVN-KNQMTGFKQDEPRYPASLTKMMTLY 87
           +L L+I+     S+  +K  +     +   I+ +   ++  + +++P   ASLTK+MT  
Sbjct: 1   MLVLAIVFQPALSKADSKLGFEDKVKAYYTIEQDYSQELLNYNENKPLAIASLTKIMTYV 60

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           ++ E + + K  L+ +I +    A    S + LK+    T    I  ++  S ND +   
Sbjct: 61  LVMEDINANKYKLDDKIKIQTQYAKPEASTMQLKKGEELTVNDLIRGMMIVSGNDAADEL 120

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILGILLRKNF 205
                GS  KF   M+ KA ++ +++  + +ASG    DK  + +A+D A L      N+
Sbjct: 121 AVKSEGSVGKFVERMNKKAAELELESAKFYSASGYPENDKENLMSAKDLAKLTTYTINNY 180

Query: 206 PQYYKYFSIRKFRYRNRIIT--NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK---- 259
           PQ   Y   +K    +R          L K+  +DG KTG T  +G+ ++T++  K    
Sbjct: 181 PQVLNYTKTQKLVMPSRKYEAATTVPFLGKIEGVDGFKTGTTEKAGYCLITTMSLKPNNP 240

Query: 260 DDPIVAVVMGMPTSQERDQ---KALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMI 315
            + +V+V+MG PT  +R+      LE + +  E   + + +   +  L  + + K + I
Sbjct: 241 KNKVVSVLMGAPTKYDRNTYQKIMLEYVRNSFEPMNILNSEKPIETKLVDSVVDKKVEI 299


>gi|237740954|ref|ZP_04571435.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 4_1_13]
 gi|229430998|gb|EEO41210.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 4_1_13]
          Length = 414

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 73/256 (28%), Positives = 123/256 (48%), Gaps = 12/256 (4%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++++   K  +   K  +  YP AS+TKMM+L + F+ + +  + LN  + +SK      
Sbjct: 161 AVIVGDTKGNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGNISLNDSVRISKNPLKYG 220

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQN 173
            S + LK    F  E  I A    SAN+ + A  E++  GS   F   M+ K K++G+QN
Sbjct: 221 GSGIALKVGQMFVLEDLIKASAVYSANNATYAIAEYVGKGSVFSFVTKMNRKLKELGLQN 280

Query: 174 -TIYKNASGLHD-----KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIIT 225
              Y   +GL            TAR    L I   K + +Y +   I+  +  N    I 
Sbjct: 281 EIRYHTPAGLPTRVTKQPMDEGTARGIYKLSIEALK-YKKYIEIAGIKSTKIHNGKISIR 339

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N N L+ + + + GIKTG+ + + +NI  + +++D  ++ VVMG  T + RD+  L ++ 
Sbjct: 340 NRNHLIGE-NGVYGIKTGFHKEAKYNIAVASKFQDTDVIIVVMGGETYKTRDKIVLSVLD 398

Query: 286 SFLEKKTLKHQQTHRK 301
                 T+K+    RK
Sbjct: 399 ILNNNYTVKNGLIKRK 414


>gi|225570111|ref|ZP_03779136.1| hypothetical protein CLOHYLEM_06207 [Clostridium hylemonae DSM
           15053]
 gi|225161581|gb|EEG74200.1| hypothetical protein CLOHYLEM_06207 [Clostridium hylemonae DSM
           15053]
          Length = 454

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 126/309 (40%), Gaps = 30/309 (9%)

Query: 49  HAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS 107
            A    + IV++V    +   K  DE  +PAS+TK++T  +  E  Q     L  ++  +
Sbjct: 67  PATYGEAGIVMEVGTGAILYAKNIDEHEFPASITKVLTALVALENGQ-----LTDEVTFT 121

Query: 108 KTAAT---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS----EKKFAI 160
             +        S + +KE    + ++ + A +  SAN+ + A GE +  +       F  
Sbjct: 122 HDSVAFLQPGDSSIGMKEGDVISLDEALHATLLASANEAAYAVGESVGRNAGHDYNWFLE 181

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI------ 214
            M+ + K++G +N+ + N +GLHD+N  T ARD A++G  L K  P+++           
Sbjct: 182 QMNARCKELGGENSHFANTNGLHDENHYTCARDMALIGRELFK-HPEFFDIVQTLNYAIP 240

Query: 215 RKFRYRNRIITNHNKLL-----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
                   I    +K+L     N      G KTGYT ++   ++T        +V VV+ 
Sbjct: 241 ATDTCEEHIFQQKHKMLIPGNSNYYEYAVGGKTGYTSDALSTLITMAEKDGVRLVCVVLR 300

Query: 270 MPTSQERDQKALELITSFLE--KKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
              S         L+       KKT    +   KD  S         +   +    +FK 
Sbjct: 301 THGSNI-YSDTKNLLDYGFSNFKKTAASGEEDSKDVDSIIDSDGDGYVMLPEGI--KFKD 357

Query: 328 IDAKAHSTQ 336
           +D K  + +
Sbjct: 358 LDMKLKADE 366


>gi|313651237|gb|EFS15635.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri 2a str. 2457T]
 gi|332755752|gb|EGJ86113.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri K-671]
 gi|332756170|gb|EGJ86521.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri 2747-71]
          Length = 300

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 108/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAA 111
           S++++D+N N++      +  R  AS++K+MT  ++ +     +L L+ +  + +S+T  
Sbjct: 32  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDA----RLPLDEKLKVDISQTP- 86

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +      G  K F   M+ KAK +GM
Sbjct: 87  EMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGM 146

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIIT---- 225
            NT +   +GL   N ++TARD   L ++  K +P   +  + R+    + N   T    
Sbjct: 147 NNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFR 204

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L 
Sbjct: 205 NTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLR 264

Query: 285 TS 286
           T 
Sbjct: 265 TW 266


>gi|293610046|ref|ZP_06692347.1| D-alanyl-D-alanine endopeptidase [Acinetobacter sp. SH024]
 gi|292827278|gb|EFF85642.1| D-alanyl-D-alanine endopeptidase [Acinetobacter sp. SH024]
          Length = 348

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 61/263 (23%), Positives = 115/263 (43%), Gaps = 18/263 (6%)

Query: 39  IIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           +  I   S  +A+P  S+   +V+D    ++   K  +     AS+TK+MT  +  +   
Sbjct: 87  VAPIRDTSGYNAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKVMTAVVTADA-- 144

Query: 95  SKKLHLNTQIPVSKTAATQNP---SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
             +L+++ +I + +          S   L+        + +L  + +S N  + A     
Sbjct: 145 --RLNMSEEITLEQIDFAGAGGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTY 202

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            G    F   M+ KA+ +GM +T Y  ++GL D   +++ARD  IL     + +    ++
Sbjct: 203 PGGRPAFVAAMNAKARALGMNSTHYYESTGL-DPRNVSSARDLGILVSTASQ-YGLIRQF 260

Query: 212 FSIRKFRYR--NRII--TNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
            +   + +    R++   N N L+ N   NI+  KTGY   +G  +V        P V V
Sbjct: 261 STTPTYDFNLGYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIV 320

Query: 267 VMGMPTSQERDQKALELITSFLE 289
           ++G P++Q R+  A  L+     
Sbjct: 321 LLGEPSTQARNNDATNLLGWLSN 343


>gi|295101851|emb|CBK99396.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
           L2-6]
          Length = 429

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 116/293 (39%), Gaps = 30/293 (10%)

Query: 21  SIYIQRNIQLM-GKILFLSIIMISMA----SELHAKPKYSSIVIDVNKNQ-MTGFKQDEP 74
           S +++R+  L+   +L +   +   A        A    S  + +++  + +     D+ 
Sbjct: 4   STFLRRSTALLLTLVLMVCAALPGFAAYQMPIQTASDTESVYLFNLDTGKPILRQNSDQQ 63

Query: 75  RYPASLTKMMTLYIIFEYLQSKK------LHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128
           RY ASLTKMMT  +  E  +           L  +    + A   N S + L+       
Sbjct: 64  RYIASLTKMMTALLFLESGKDMNAEITIPTSLTQEFKDIQNA---NGSTMNLRIGETVRR 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
              +  L+  SAND ++     +SG +   F   M+ +AK++G  +T +    GL+D   
Sbjct: 121 IDLLYGLLVASANDAASVIASDVSGGDLTAFVAQMNARAKELGCTDTTFSCVHGLYDYGN 180

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFR-------YRNRIITNHNKLLNKM-----H 235
           ++TA D A +      N   Y +  +   +           R I + N +L+        
Sbjct: 181 VSTAEDLAKIAAACYAN-ETYMQAANTLTYTLPATNLHQNERTIKSTNLMLDPEYAYHRD 239

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            + G+KTG+T  +G   VT  +        VV+G   +    ++  E++    
Sbjct: 240 YVRGMKTGFTTLAGRCFVTFAQQDGHTYGLVVLGSDMNNI-YRECAEILDWAF 291


>gi|237743211|ref|ZP_04573692.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 7_1]
 gi|229433507|gb|EEO43719.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 7_1]
          Length = 389

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 71/256 (27%), Positives = 122/256 (47%), Gaps = 12/256 (4%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++++   K  +   K  +  YP AS+TKMM+L + F+ + +  + LN  + +SKT     
Sbjct: 136 AVIVGDTKGNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGNISLNDSVRISKTPLKYG 195

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQN 173
            S + LK    F  E  I A    SAN+ + A  E++  GS   F   M+ K +++G+QN
Sbjct: 196 GSGIALKAGQMFILEDLIKAAAVYSANNATYAIAEYVGNGSIFGFVTKMNKKLRELGLQN 255

Query: 174 -TIYKNASGLHD-----KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIIT 225
              Y   +GL            TAR    L I   K + +Y +   I+  +  N    I 
Sbjct: 256 EIKYHTPAGLPTRVTKQPMDEGTARGIYKLSIEALK-YKKYIEIAGIKTTKIHNDKISIR 314

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N N L+ + + + GIKTG+ + + +NI  + +++   ++ VV+G  T + RD     ++ 
Sbjct: 315 NRNHLIGE-NGVYGIKTGFHKEAKYNIAVASKFEGTDVIIVVLGGETYKTRDNLVRNILN 373

Query: 286 SFLEKKTLKHQQTHRK 301
              E  T+K+    RK
Sbjct: 374 ILSENYTVKNGLIKRK 389


>gi|3043860|gb|AAC14599.1| extracellular protein Exp2 precursor [Lactococcus lactis subsp.
           cremoris MG1363]
          Length = 284

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 29/246 (11%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
              S+I ID +  ++   +   D     AS+TK++T Y++++ +   KL   T++P+S  
Sbjct: 36  AAKSAIAIDASSGKILYAQNADDASTRIASITKLLTAYLVYKNVAENKLTWTTKVPISDY 95

Query: 110 A----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           A       N S + L +   +T +  + AL+  SAN  + A  E I+GSE KF  +M+ +
Sbjct: 96  AYELTQNSNASNIPLAQNGQYTVKDLLNALLLPSANSAAIALAEKIAGSEPKFVDMMTKQ 155

Query: 166 AKKIGMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKY 211
            K  G+ ++   NASGL + +                 +A+  A L   L ++FP+  + 
Sbjct: 156 MKDWGITDSHLVNASGLPNDDLNGHIYPGSGASATNTMSAKAVATLSYHLIQDFPEVLQI 215

Query: 212 FSIRKFRY-----RNRIITNHNKLLNKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDP 262
               +  +         +TN N++L+        +DG+KTG T         +       
Sbjct: 216 TKKTEIPFDTGNEEKMTLTNTNQMLSGFSTSRTGVDGLKTGSTSFQIDCFAGTTNQNGFR 275

Query: 263 IVAVVM 268
           I+ VV+
Sbjct: 276 IITVVL 281


>gi|300917026|ref|ZP_07133721.1| beta-lactamase [Escherichia coli MS 115-1]
 gi|300415701|gb|EFJ99011.1| beta-lactamase [Escherichia coli MS 115-1]
          Length = 313

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 66/279 (23%), Positives = 120/279 (43%), Gaps = 28/279 (10%)

Query: 28  IQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQDE-PRYP 77
           + L    L L++ +   A    A             S++++D+N N++      +  R  
Sbjct: 9   VSLFSLALMLAVPLAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPI 68

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQN-PSKLYLKEKTYFTTEQGILA 134
           AS++K+MT  ++ +     +L L+ +  + +S+T   +   S++ L   +  + +  +L 
Sbjct: 69  ASISKLMTAMVVLDA----RLPLDEKLKVDISQTPEMKEVYSRVRL--NSEISRKDMLLL 122

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + +      G  K F   M+ KAK +GM NT +   +GL   N ++TARD 
Sbjct: 123 ALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHN-VSTARDL 181

Query: 195 AILGILLRKNFPQYYKYFSIRK--FRYRNRIIT----NHNKLLNKM-HNIDGIKTGYTRN 247
             L ++  K +P   +  + R+    + N   T    N N L+ +   NI   KTG+T  
Sbjct: 182 TKL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNA 240

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           +G  +V      + P+  VVM           A  L T 
Sbjct: 241 AGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 279


>gi|318604889|emb|CBY26387.1| murein-DD-endopeptidase [Yersinia enterocolitica subsp. palearctica
           Y11]
 gi|330859412|emb|CBX69757.1| D-alanyl-D-alanine endopeptidase [Yersinia enterocolitica W22703]
          Length = 322

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 63/264 (23%), Positives = 106/264 (40%), Gaps = 20/264 (7%)

Query: 38  SIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFE 91
           + I    ASE+  K        S++V+D+  N++      DE    AS+TK+MT  ++ +
Sbjct: 35  TAIASGGASEVKGKAPLELASGSAMVVDLQTNKVIYANNADEVVPIASITKLMTAMVVLD 94

Query: 92  YLQSKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
                KL L+  I V              ++  +  + +  +L  +  S N  + +    
Sbjct: 95  A----KLPLDEIISVDIHQTKEMKGVFSRVRVNSEISRKDMLLLALMSSENRAAASLAHH 150

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
             G    F   M+ KAK +GM  T Y   +GL   N ++TARD   L ++  K +P   +
Sbjct: 151 YPGGYNAFINAMNAKAKSLGMTKTRYVEPTGLSI-NNVSTARDLTKL-LIATKQYPLIGQ 208

Query: 211 YFSIRK----FRYRNRIIT--NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
             +  +    FR  N  +   N N L+     NI   KTG+T  +G  +       + P+
Sbjct: 209 LSTTTEKMATFREPNYTLPFRNTNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPV 268

Query: 264 VAVVMGMPTSQERDQKALELITSF 287
             VV+           A  L +  
Sbjct: 269 ALVVLDAFGKYTHFADANRLRSWM 292


>gi|269139886|ref|YP_003296587.1| D-alanyl-D-alanine endopeptidase [Edwardsiella tarda EIB202]
 gi|267985547|gb|ACY85376.1| D-alanyl-D-alanine endopeptidase [Edwardsiella tarda EIB202]
 gi|304559723|gb|ADM42387.1| Murein-DD-endopeptidase [Edwardsiella tarda FL6-60]
          Length = 309

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 57/247 (23%), Positives = 93/247 (37%), Gaps = 15/247 (6%)

Query: 55  SSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+N +Q+      D     AS+TK+MT  +  +   +    L+  I V      +
Sbjct: 46  SAMVVDMNNHQVIYASHPDVQVPIASITKLMTAMVTLDAHPN----LDEVIAVDIHRTKE 101

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  ++  +  T  Q +L  +  S N  +        G    F   M+ KA+ +GM 
Sbjct: 102 LKGVFSRVRVGSELTRRQMLLLALMSSENRAAATLAHHYPGGYDAFIRAMNAKARALGMT 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY--YKYFSIRKFRYRNRIIT----N 226
            T Y   +GL   N +++ARD   L     K +P          +   + +   T    N
Sbjct: 162 RTHYVEPTGLS-PNNVSSARDLVKLLQAA-KGYPLIGELSTTETKSVTFAHPTYTETFNN 219

Query: 227 HNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N LL     NI   KTG+T  +G  +         P+  VV+           A  L  
Sbjct: 220 TNHLLRNDKWNIQMTKTGFTNQAGHCLAMRTVIGGRPVALVVLDAFGKYTHFADANRLRE 279

Query: 286 SFLEKKT 292
             L  K+
Sbjct: 280 WMLTGKS 286


>gi|254251960|ref|ZP_04945278.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia dolosa AUO158]
 gi|124894569|gb|EAY68449.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia dolosa AUO158]
          Length = 384

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 57/249 (22%), Positives = 102/249 (40%), Gaps = 14/249 (5%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            +  A     + V+D N  +    K      P AS++K+MT  ++ +     KL +  Q+
Sbjct: 123 PDALALRSSVAYVVDQNTGEPLFDKNSHAVVPIASISKLMTAMVVLDS----KLPMTDQL 178

Query: 105 PVSKTAATQN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            V+         +   L   +  + E  +   +  S N  + A   +  G    F   M+
Sbjct: 179 EVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMN 238

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY---- 219
            KAK +GM +T ++N++GL   N +++ARD   L     + +P   K+ + R +      
Sbjct: 239 AKAKALGMADTHFENSTGLSSSN-VSSARDLVKLVNAAYQ-YPLIRKFSTDRTYEVYTGK 296

Query: 220 RNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           RN +  + N L+  N   +I   KTG+   +G  +V        P+V V++       R 
Sbjct: 297 RNLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGRPVVMVLLDSFGKYSRF 356

Query: 278 QKALELITS 286
             A  L   
Sbjct: 357 ADAARLRNW 365


>gi|256846732|ref|ZP_05552188.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp.
           3_1_36A2]
 gi|256717952|gb|EEU31509.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp.
           3_1_36A2]
          Length = 425

 Score =  185 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 73/256 (28%), Positives = 123/256 (48%), Gaps = 12/256 (4%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++++   K  +   K  +  YP AS+TKMM+L + F+ + +  + LN  + +SK      
Sbjct: 172 AVIVGDTKGNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGNISLNDSVRISKNPLKYG 231

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQN 173
            S + LK    F  E  I A    SAN+ + A  E++  GS   F   M+ K K++G+QN
Sbjct: 232 GSGIALKAGQMFVLEDLIKASAVYSANNATYAIAEYVGKGSVFSFVTKMNRKLKELGLQN 291

Query: 174 -TIYKNASGLHD-----KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIIT 225
              Y   +GL            TAR    L I   K + +Y +   I+  +  N    I 
Sbjct: 292 EIRYHTPAGLPTRVTKQPMDEGTARGIYKLSIEALK-YKKYIEIAGIKSTKIHNGKISIR 350

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N N L+ + + + GIKTG+ + + +NI  + +++D  ++ VVMG  T + RD+  L ++ 
Sbjct: 351 NRNHLIGE-NGVYGIKTGFHKEAKYNIAVASKFQDTDVIIVVMGGETYKTRDKIVLSVLD 409

Query: 286 SFLEKKTLKHQQTHRK 301
                 T+K+    RK
Sbjct: 410 ILNNNYTVKNGLIKRK 425


>gi|283479035|emb|CAY74951.1| penicillin-binding protein 7 [Erwinia pyrifoliae DSM 12163]
          Length = 316

 Score =  185 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 60/259 (23%), Positives = 109/259 (42%), Gaps = 19/259 (7%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT- 102
           ++   A    S++++D+N N++      D  R  AS+TK+MT+ +  +      L L+  
Sbjct: 36  SAARPAIASGSAMIVDLNSNKVIYESHPDRVRPIASITKLMTVMVTLDAH----LPLDEM 91

Query: 103 -QIPVSKTAATQNP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
            ++ +S T   +   S++ L   +  + +  +L  +  S N  + +      G    F  
Sbjct: 92  LKVDISHTPQMRGIYSRVRL--NSELSRKNMMLLALMSSENRAAASLAHHYPGGYDAFIR 149

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK---- 216
            M+ KA+ +GM +T Y   +GL   + ++TARD + L     K +P   +  +  +    
Sbjct: 150 AMNAKARALGMSHTRYVEPTGLSI-DNVSTARDLSKLLQAT-KRYPLIGQLSTTHEDMAS 207

Query: 217 FRYRNRIIT--NHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           FR  N  +   N N L+ +   NI   KTG+T  +G  +V        P+  VV+     
Sbjct: 208 FRSPNYTLPFRNTNHLVYRPDWNIQLTKTGFTNEAGHCLVMRTVINQRPVSLVVLDAFGK 267

Query: 274 QERDQKALELITSFLEKKT 292
                 A  L       K 
Sbjct: 268 YTHFADASRLRQWMENGKV 286


>gi|262173460|ref|ZP_06041137.1| murein-DD-endopeptidase [Vibrio mimicus MB-451]
 gi|261890818|gb|EEY36805.1| murein-DD-endopeptidase [Vibrio mimicus MB-451]
          Length = 317

 Score =  185 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 64/289 (22%), Positives = 118/289 (40%), Gaps = 34/289 (11%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAK-------------------PKYSSIVIDVNKNQM 66
           + + L+G +  +   ++  A    A                       S++VID+  N++
Sbjct: 2   KKLSLLGSVFLVCSSLLIAAPAHSADSATATPKATVKKTVKKQELAANSALVIDLKTNEV 61

Query: 67  TGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAATQNPSKLYLKEKT 124
                 D  R  AS+TK+MT  +  +     KL + T++P++ + A         ++  +
Sbjct: 62  IYSSNPDAVRPIASVTKLMTAIVTLDA----KLPMETKLPITIQEAREMKGVHSRVRIGS 117

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
             + +  +L  +  S N  + +      G  K F   M++KAK +GM+NT +   +GL +
Sbjct: 118 EISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNSKAKALGMKNTRFVEPTGLSE 177

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------NRIITNHNKLL-NKMHNI 237
           KN +++ARD  +L     K +P   +  +  K          +    N N+L+ N    I
Sbjct: 178 KN-VSSARDLVLLLKA-SKKYPMLGQLSATEKKTVTFAKPRYSLDFRNTNRLVFNDNWKI 235

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           D  KTG+T  +G  +V   +     +  VV+           A  L T 
Sbjct: 236 DLTKTGFTNAAGHCLVMRTQMGKRQVAFVVLDTKGKLSPVGDANRLRTW 284


>gi|226951746|ref|ZP_03822210.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter sp. ATCC
           27244]
 gi|294648989|ref|ZP_06726437.1| D-alanyl-D-alanine endopeptidase [Acinetobacter haemolyticus ATCC
           19194]
 gi|226837536|gb|EEH69919.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter sp. ATCC
           27244]
 gi|292825124|gb|EFF83879.1| D-alanyl-D-alanine endopeptidase [Acinetobacter haemolyticus ATCC
           19194]
          Length = 354

 Score =  185 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 110/243 (45%), Gaps = 15/243 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             +++V+D    ++   K  +     AS+TK+MT  +  +     +L+++ ++ + +   
Sbjct: 110 ARAALVMDAQTGEVLFSKNTNTALPIASITKVMTAVVTADA----RLNMSEEVTLQQIDF 165

Query: 112 TQNP---SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                  S   L+        + +L  + +S N  + A      G    F   M++KAK+
Sbjct: 166 AGAGGKNSSSTLRAGDSMNRAELLLFALMKSENPAAAALARTYPGGRTAFYAAMNSKAKQ 225

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR--NRII-- 224
           +GM  T +  ++GLH    +++ARD  IL     + +    ++ +   + +    R++  
Sbjct: 226 LGMTATHFIESTGLH-PGNVSSARDLGILVSAASQ-YGLIRQFSTTPTYDFNLGYRVLKS 283

Query: 225 TNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            N N L+ N   NI+  KTGY   +G  +V        P V V++G P++Q R+  A  L
Sbjct: 284 NNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVVVLLGAPSTQARNSDATNL 343

Query: 284 ITS 286
           +T 
Sbjct: 344 LTW 346


>gi|327472301|gb|EGF17732.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK408]
          Length = 422

 Score =  185 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 64/348 (18%), Positives = 137/348 (39%), Gaps = 47/348 (13%)

Query: 31  MGKILFLSIIMISMASELHAK-----PKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMM 84
           M ++    ++++ M +   A         S++ +D    ++   K    P    S+T ++
Sbjct: 1   MKRLFLCLLVLVGMTASKVAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLL 60

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           T+Y+++E +    L  +T + +S  A    +  N S + L+ K  +  +  I A +  S+
Sbjct: 61  TVYLVYEAIDRGDLTADTYVDISDYAYNLTSNPNISNVPLEAK-RYKVKDLIAASLMSSS 119

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------------- 183
           N  + A  E + GSE+ F  +M  K K+ G+ +    N++GL+                 
Sbjct: 120 NSATIALAEKVGGSEENFVQMMKAKIKEWGITDATIVNSTGLNTLLLEYATEETEYSASA 179

Query: 184 -------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH- 235
                  D     +A D A++   L  +FPQ  +  S    +     + N+N +L     
Sbjct: 180 STAKKSKDTENKFSAYDLAVISRHLIMDFPQVTEITSKSTAKIAGTSLENYNFMLENQPN 239

Query: 236 ---NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELIT--- 285
               +DG+K G +   G + V +       ++ VV+ +         R      L+    
Sbjct: 240 FRSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVLNVDQTDGDPYARFVATASLMNYVS 299

Query: 286 -SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
            +F +   +   + + K   +    K+  +     + ++  ++I  +A
Sbjct: 300 QNFTQTTIVAEGEAYNKSKSTVIDGKQKTVPAVASKDFTIIERIANQA 347


>gi|268680339|ref|YP_003304770.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268618370|gb|ACZ12735.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 309

 Score =  185 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 64/281 (22%), Positives = 127/281 (45%), Gaps = 22/281 (7%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYS----SIVI-DVNKNQMTGFKQDEPR-YPA 78
           ++ + L+  +  L+  + +   +     + S    +I+  D++  ++   K  +    PA
Sbjct: 3   KKFLTLLCGVSLLTTSLSANYLDKETAARLSKNTDAIIAKDLSTKELIFSKDAQKINQPA 62

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           SLTK+MT  +  E  +     +N  + +++      P+K  L+    F     + A +  
Sbjct: 63  SLTKIMTAMLAIESGR-----MNDVVTITRDMIQVEPTKAGLRIGEKFYLRDLVKAAMVM 117

Query: 139 SANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           SAND + + G ++  G+   F   M+ KAK++GM NT + N  G    +  +TA D   +
Sbjct: 118 SANDAAMSIGVYLGDGNVNTFVAKMNRKAKQLGMNNTNFTNPCGFDIGDHHSTALDLLKM 177

Query: 198 GILLRKNFPQYYKYFSIRKFRYRN------RIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
                KN  Q+ +   +++  +++           HNKLLN      GIKTGYTR +G  
Sbjct: 178 SEYAIKNS-QFNEMAKLKRHDFKSLNTKRAYAAYTHNKLLNNYKYAVGIKTGYTRKAGPC 236

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           ++   +  +  ++ V++    S++R +    +    L + T
Sbjct: 237 LIARAKNGNKDVLVVML---NSEQRWKDIKTIFEDVLPQLT 274


>gi|221067891|ref|ZP_03543996.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Comamonas
           testosteroni KF-1]
 gi|220712914|gb|EED68282.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Comamonas
           testosteroni KF-1]
          Length = 402

 Score =  185 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 105/242 (43%), Gaps = 13/242 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + VID + +++   K D+   P ASLTK+MT  +I +     +L ++  I +++      
Sbjct: 153 AYVIDQDTHEVLLSKNDQAVLPIASLTKLMTGLLISQA----RLPMDEMITITQDDVDTE 208

Query: 115 P-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   L+  T  T  + +   +  S N  + A G    G   +F  LM++KA ++GM++
Sbjct: 209 KHSSSRLRVGTTLTRAEMMHLALMSSENRAAHALGRTYPGGLSQFVQLMNSKALQLGMKD 268

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T Y   +GL   NQ ++ARD A L  +   + P   +Y +   +      R     N N+
Sbjct: 269 TRYVEPTGLSSSNQ-SSARDLARLVAVAHAD-PLMREYSTSPGYEVAVGRRTLQFNNTNR 326

Query: 230 LLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           L+   +   G+ KTGY   +G  +V         ++ V +       R   A  +     
Sbjct: 327 LVKSDNWDIGLQKTGYISEAGRCLVMQAHVAGRKLIMVFLDSAGKFSRLADAERVRHWME 386

Query: 289 EK 290
            K
Sbjct: 387 SK 388


>gi|153815363|ref|ZP_01968031.1| hypothetical protein RUMTOR_01597 [Ruminococcus torques ATCC 27756]
 gi|145847222|gb|EDK24140.1| hypothetical protein RUMTOR_01597 [Ruminococcus torques ATCC 27756]
          Length = 519

 Score =  185 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 109/236 (46%), Gaps = 26/236 (11%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+IV+++N   +   K+ ++  YPAS+TK++T  +  E         + ++  S+ + 
Sbjct: 71  ANSAIVMEMNSGAILYGKKINDKHYPASITKLLTALVALENADP-----DDEVYFSEDSV 125

Query: 112 T---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG----EFISGSEKKFAILMSN 164
           +      + + ++     +    +  ++  SAN+VS A      + + G  + F   M+ 
Sbjct: 126 SFLEYGDASIGMRPGEILSMNDALYGMLLASANEVSYAIAESVGKKMGGGFETFIQKMNE 185

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII 224
           + +++G   + + NA+GLHD+N  TTA D A++G  + + F ++ +      +      +
Sbjct: 186 RCEELGCTGSHWTNANGLHDENHYTTAHDMALIGSAVYQ-FDKFREVTQTLNYTIPPTNL 244

Query: 225 TN-------HNKLLN-----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            N       ++K+L            G KTGYT  +   +VT     D  +VAVV+
Sbjct: 245 VNESRTFQQNHKMLWVGAHYSYDYCTGGKTGYTDQAKTTLVTMADNADMQLVAVVL 300


>gi|259909020|ref|YP_002649376.1| D-alanyl-D-alanine endopeptidase [Erwinia pyrifoliae Ep1/96]
 gi|224964642|emb|CAX56156.1| Penicillin-binding protein 7 (D-alanyl-D-alanine-endopeptidase)
           [Erwinia pyrifoliae Ep1/96]
          Length = 295

 Score =  185 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 60/259 (23%), Positives = 109/259 (42%), Gaps = 19/259 (7%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT- 102
           ++   A    S++++D+N N++      D  R  AS+TK+MT+ +  +      L L+  
Sbjct: 15  SAARPAIASGSAMIVDLNSNKVIYESHPDRVRPIASITKLMTVMVTLDAH----LPLDEM 70

Query: 103 -QIPVSKTAATQNP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
            ++ +S T   +   S++ L   +  + +  +L  +  S N  + +      G    F  
Sbjct: 71  LKVDISHTPQMRGIYSRVRL--NSELSRKNMMLLALMSSENRAAASLAHHYPGGYDAFIR 128

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK---- 216
            M+ KA+ +GM +T Y   +GL   + ++TARD + L     K +P   +  +  +    
Sbjct: 129 AMNAKARALGMSHTRYVEPTGLSI-DNVSTARDLSKLLQAT-KRYPLIGQLSTTHEDMAS 186

Query: 217 FRYRNRIIT--NHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           FR  N  +   N N L+ +   NI   KTG+T  +G  +V        P+  VV+     
Sbjct: 187 FRSPNYTLPFRNTNHLVYRPDWNIQLTKTGFTNEAGHCLVMRTVINQRPVSLVVLDAFGK 246

Query: 274 QERDQKALELITSFLEKKT 292
                 A  L       K 
Sbjct: 247 YTHFADASRLRQWMENGKV 265


>gi|300215120|gb|ADJ79536.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           salivarius CECT 5713]
          Length = 384

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 77/352 (21%), Positives = 148/352 (42%), Gaps = 46/352 (13%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTL 86
           I +M  I  ++   I    E       ++ +ID    Q+   +    +YP ASLTK++TL
Sbjct: 10  ILVMLGIAIITGSGIMRGVEADKIDAKAAYMIDAGTGQVLYQQNANSKYPIASLTKILTL 69

Query: 87  YIIFEYLQSKKLHLNTQIPV----SKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
            +I + + ++KL  + +I V    S  A     S + L E   +T +  + +++  SA+ 
Sbjct: 70  AVIMKDIHNQKLSWDQKIKVNKDVSDMANNWQYSNVQLNEGESYTVKSLVESMMIVSADG 129

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HDKNQI 188
            + A     +GS K F   M   A + G+ +    N  GL               D+   
Sbjct: 130 STEALALADAGSVKAFNEKMKEVAHEAGVTDAEIYNMIGLPNSDLGNLKLKNVGDDQENK 189

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NRIITNHNKLLNKMH------NI 237
            +A+D A++   L  N+P+       +   ++        + N N +L   +       I
Sbjct: 190 FSAKDIALISKYLVNNYPEVIDITKQKNVDFKISADQTYNMENINYMLEGSYAAPKNGTI 249

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKH-- 295
           DG+KTG+T  +G+  V +  +    ++ V++      ++  +  ++I S +    + +  
Sbjct: 250 DGLKTGFTDEAGYCFVGTGTFNGQRVITVILNASDYNKQFAETNKIIESVMNNDKVVNTK 309

Query: 296 -----QQTHRKDNL----SSTSLKKSLMIK--KLKRTYSQFKKIDAKAHSTQ 336
                +Q  +K+NL    ++  + K+   K  K K T S  K    KA +T+
Sbjct: 310 DIKSVKQALKKENLKVNDTNIWVTKNTDPKQIKAKLTLSNEK---IKAKNTK 358


>gi|294784444|ref|ZP_06749735.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp. 3_1_27]
 gi|294488016|gb|EFG35371.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp. 3_1_27]
          Length = 425

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 73/256 (28%), Positives = 123/256 (48%), Gaps = 12/256 (4%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++++   K  +   K  +  YP AS+TKMM+L + F+ + +  + LN  + +SK      
Sbjct: 172 AVIVGDTKGNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGNISLNDSVRISKNPLKYG 231

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQN 173
            S + LK    F  E  I A    SAN+ + A  E++  GS   F   M+ K K++G+QN
Sbjct: 232 GSGIALKVGQMFVLEDLIKASAVYSANNATYAIAEYVGKGSVFSFVTKMNRKLKELGLQN 291

Query: 174 -TIYKNASGLHD-----KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIIT 225
              Y   +GL            TAR    L I   K + +Y +   I+  +  N    I 
Sbjct: 292 EIRYHTPAGLPTRVTKQPMDEGTARGIYKLSIEALK-YKKYIEIAGIKSTKIHNGKISIR 350

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N N L+ + + + GIKTG+ + + +NI  + +++D  ++ VVMG  T + RD+  L ++ 
Sbjct: 351 NRNHLIGE-NGVYGIKTGFHKEAKYNIAVASKFQDTDVIIVVMGGETYKTRDKIVLSVLD 409

Query: 286 SFLEKKTLKHQQTHRK 301
                 T+K+    RK
Sbjct: 410 ILNNNYTVKNGLIKRK 425


>gi|331089269|ref|ZP_08338171.1| hypothetical protein HMPREF1025_01754 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330405821|gb|EGG85350.1| hypothetical protein HMPREF1025_01754 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 514

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 109/236 (46%), Gaps = 26/236 (11%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+IV+++N   +   K+ ++  YPAS+TK++T  +  E         + ++  S+ + 
Sbjct: 66  ANSAIVMEMNSGAILYGKKINDKHYPASITKLLTALVALENADP-----DDEVYFSEDSV 120

Query: 112 T---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG----EFISGSEKKFAILMSN 164
           +      + + ++     +    +  ++  SAN+VS A      + + G  + F   M+ 
Sbjct: 121 SFLEYGDASIGMRPGEILSMNDALYGMLLASANEVSYAIAESVGKKMGGGFETFIQKMNE 180

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII 224
           + +++G   + + NA+GLHD+N  TTA D A++G  + + F ++ +      +      +
Sbjct: 181 RCEELGCTGSHWTNANGLHDENHYTTAHDMALIGSAVYQ-FDKFREVTQTLNYTIPPTNL 239

Query: 225 TN-------HNKLLN-----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            N       ++K+L            G KTGYT  +   +VT     D  +VAVV+
Sbjct: 240 VNESRTFQQNHKMLWVGAHYSYDYCTGGKTGYTDQAKTTLVTMADNADMQLVAVVL 295


>gi|313621847|gb|EFR92532.1| serine-type D-Ala-D-Ala carboxypeptidase [Listeria innocua FSL
           J1-023]
          Length = 272

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 114/241 (47%), Gaps = 7/241 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++ V  V        K  +   P ASLTK+MT +++ E + + +L  + ++ + +     
Sbjct: 33  AAAVYSVENGIAVYEKNADKVMPIASLTKLMTAFLVLEAVDNNELSWDEELDLVRLDDPS 92

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM-Q 172
             S   + +K  ++      A++  SAND +   G  +   +  F   M+N+AKK+G+ +
Sbjct: 93  AVSLYAITQKRTWSVRDLYNAMLVMSANDAAETLGNRL--DDANFPQKMNNEAKKLGLSK 150

Query: 173 NTIYKNASGLHDKNQI--TTARDQAILGILLRKNFPQYYKYFSIRK-FRYRNRIITNHNK 229
            T + +ASGL    ++  +T +D  +L   L    P+  +  S           + + N 
Sbjct: 151 KTKFVSASGLDVDGKMAVSTTKDLFLLSSKLISTHPEVLETTSKSSIITEEGATLESTND 210

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
            +  +  +DG+KTG+T  +G+  + + +     ++++V+   T+++R +   +L+    +
Sbjct: 211 SIGSIQGLDGLKTGFTDEAGYCFIGTAKRDGKRVISIVLDAGTAEKRFKDTEKLMEIGFK 270

Query: 290 K 290
           +
Sbjct: 271 E 271


>gi|206968269|ref|ZP_03229225.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH1134]
 gi|206737189|gb|EDZ54336.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH1134]
          Length = 428

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 68/284 (23%), Positives = 121/284 (42%), Gaps = 21/284 (7%)

Query: 59  IDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K      +PAS TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 55  IDAKTGDVLYDKNAYHRAFPASTTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 109

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ KAK++G +++ 
Sbjct: 110 YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSH 169

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  + ++        T    N +   
Sbjct: 170 FVTPNGLHDPNHYTTPYDMAMITKGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSNFF 228

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I++VVM     +  E  ++  E       
Sbjct: 229 EN-PYSIGGKTGFTNEARNTLVLLNEKDGNRIISVVMASQRPEIYEDLKQMAEYSFGQFT 287

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           K+ +      HQ+T   +   ++ L++S  +   K      K I
Sbjct: 288 KQMVLDKHNWHQKTTYLNKDVNSELEQSAELMLKKDEGKNVKTI 331


>gi|56412918|ref|YP_149993.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|56127175|gb|AAV76681.1| penicillin-binding protein 7 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
          Length = 315

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 61/273 (22%), Positives = 116/273 (42%), Gaps = 29/273 (10%)

Query: 36  FLSIIMISMASELHAK------------PKYSSIVIDVNKNQMTGFKQDE-PRYPASLTK 82
           F  ++ +  A +  AK               S++++D+N N++      +  R  AS+TK
Sbjct: 11  FALMLAVPFAPQAVAKTAATTAASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASITK 70

Query: 83  MMTLYIIFEYLQSKKLHLNT--QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           +MT  ++ +     +L L+   ++ +S+T          ++  +  + +  +L  +  S 
Sbjct: 71  LMTAMVVLDA----RLPLDEILKVDISQTP-EMKGVYSRVRLNSEISRKNMLLLALMSSE 125

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           N  + +   +  G    F   M+ KAK +GM +T +   +GL   N ++TARD   L ++
Sbjct: 126 NRAAASLAHYYPGGYNAFIKAMNAKAKALGMTHTRFVEPTGLSIHN-VSTARDLTKL-LI 183

Query: 201 LRKNFPQYYKYFSIRK----FRYRNRIIT--NHNKLLNKM-HNIDGIKTGYTRNSGFNIV 253
             K +P   +  + R+    F +    +   N N L+ +   NI   KTG+T  +G  +V
Sbjct: 184 ATKQYPLIGQLSTTREDMATFSHPAYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLV 243

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
                 + P+  VVM           A  L T 
Sbjct: 244 MRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276


>gi|169797496|ref|YP_001715289.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter baumannii
           AYE]
 gi|260556388|ref|ZP_05828607.1| D-alanyl-D-alanine endopeptidase [Acinetobacter baumannii ATCC
           19606]
 gi|169150423|emb|CAM88320.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter baumannii
           AYE]
 gi|260410443|gb|EEX03742.1| D-alanyl-D-alanine endopeptidase [Acinetobacter baumannii ATCC
           19606]
          Length = 348

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 111/253 (43%), Gaps = 18/253 (7%)

Query: 49  HAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +A+P  S+   +V+D    ++   K  +     AS+TK+MT  +  +     +L+++ +I
Sbjct: 97  NAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKLMTAVVTADA----RLNMSEEI 152

Query: 105 PVSKTAATQNP---SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
            + +          S   L+        + +L  + +S N  + A      G    F   
Sbjct: 153 TLEQIDFAGAGGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAA 212

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR- 220
           M+ KA+ +GM  T Y  ++GL D   +++ARD  IL     + +    ++ +   + +  
Sbjct: 213 MNAKARALGMNATHYYESTGL-DPRNVSSARDLGILASTASQ-YGLIRQFSTTPTYDFNL 270

Query: 221 -NRII--TNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
             R++   N N L+ N   NI+  KTGY   +G  +V        P V V++G P++Q R
Sbjct: 271 GYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEPSTQAR 330

Query: 277 DQKALELITSFLE 289
           +  A  L+     
Sbjct: 331 NNDATNLLGWLSN 343


>gi|227523786|ref|ZP_03953835.1| S11 family D-Ala-D-Ala carboxypeptidase [Lactobacillus hilgardii
           ATCC 8290]
 gi|227089101|gb|EEI24413.1| S11 family D-Ala-D-Ala carboxypeptidase [Lactobacillus hilgardii
           ATCC 8290]
          Length = 442

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 88/364 (24%), Positives = 156/364 (42%), Gaps = 40/364 (10%)

Query: 12  KTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHA-----KPKY-----SSIVIDV 61
           K  +   +      R  +LM  IL L+ ++ ++     A     KPKY        V+D 
Sbjct: 6   KKLMEVTFIMRGTSRLTKLMAVILVLACVIAALVPSATAQAKSKKPKYKFEAKEIYVMDA 65

Query: 62  NKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS---- 116
              QM   K     R  ASL+K+MTLY+  + +   +L  N ++PVSK     + S    
Sbjct: 66  KSGQMLYQKNSHQKRPIASLSKLMTLYLTKKAIDQHQLSWNQKVPVSKPLIKMSKSYELG 125

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTI 175
              +K+   +T +Q   A +  S+N  + A GE ++ GS  KF  LM+ +A+K G+ N  
Sbjct: 126 TFKIKKSKQYTVKQLYQAALIASSNSSAIALGELVAGGSNTKFINLMNRQAQKWGI-NAH 184

Query: 176 YKNASGLHDKN----------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
           + ++SGL + +                 + +A+  + +   +   FP   K+      + 
Sbjct: 185 FVSSSGLDNTDLTTYKLQVPGTGKKAQNMVSAKAISTVAAKVLGEFPSITKWSRKPSMKV 244

Query: 220 RNRIITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            N+++ N N+LL       K  ++DG+KTG+T  +G  +  S  +K   ++A ++   T 
Sbjct: 245 GNQVLVNSNRLLKGDAFYKKSEHVDGLKTGFTDTAGLCLNVSFWHKGRHLIATIIDSNTI 304

Query: 274 QERDQKALELITSFLEKKT-LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
               +K +  I      +T L HQ      N   ++  +       K   S+    D+  
Sbjct: 305 FSSMEKLVRAIEKNYTTETYLIHQNIFTIGNRKVSASPQDSRATIWKTESSKPSISDSYE 364

Query: 333 HSTQ 336
            +TQ
Sbjct: 365 PTTQ 368


>gi|225017092|ref|ZP_03706284.1| hypothetical protein CLOSTMETH_01017 [Clostridium methylpentosum
           DSM 5476]
 gi|224950149|gb|EEG31358.1| hypothetical protein CLOSTMETH_01017 [Clostridium methylpentosum
           DSM 5476]
          Length = 445

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 73/325 (22%), Positives = 131/325 (40%), Gaps = 39/325 (12%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQDEPRY-P 77
           ++R I L+   + L  +   + ++    P +     ++ ++++   ++   K  + +Y P
Sbjct: 1   MKRLIFLLLPCIVLVSLFAPLTAQAAYTPDFEINSEAAYLVNMETGKVIYEKNAQTQYLP 60

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTEQGIL 133
           AS TK+MT  I  E +       NT +        Q    + S   L+     + +  + 
Sbjct: 61  ASTTKIMTAIIALETIDDID---NTMVTAPAYVFDQLYGLSASNADLRVDEQLSMKDLLY 117

Query: 134 ALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           AL+ RSA + ++   ++I  G  +KF  +M+ KA++IG  NT + NA GL + +Q+TTA 
Sbjct: 118 ALMLRSACEGASIIADYIGEGDIQKFVDMMNAKAEEIGCTNTHFVNAHGLDEPDQLTTAY 177

Query: 193 DQAILGILLRKN------FPQYYKYFSIRKFRYRN----RIITNHNKLLNKM-------- 234
           D  ++      N      F +    +S            R+I++ NK+++          
Sbjct: 178 DMYLITNYALTNEQIGARFREIATTYSYTMAATNKHPEPRVISHTNKMMSSNTDLNGGYS 237

Query: 235 -HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM--PTSQERDQKALELITSF---L 288
              + GIKTG T N  FN+VT  +      + V +G     S         L        
Sbjct: 238 RSYVQGIKTG-TSNEYFNLVTMAKQDGYTYLLVTLGAHGQNSFVTYSDHAALYDWAFKTF 296

Query: 289 EKKTLKHQQTHRKDNLSSTSLKKSL 313
           E K L    +    N       K  
Sbjct: 297 ESKVLARPGSKTIPNDVKVEFAKGT 321


>gi|207724146|ref|YP_002254544.1| d-alanyl-d-alanine-endopeptidase (penicillin-binding protein)
           [Ralstonia solanacearum MolK2]
 gi|206589355|emb|CAQ36317.1| d-alanyl-d-alanine-endopeptidase (penicillin-binding protein)
           [Ralstonia solanacearum MolK2]
          Length = 431

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 62/306 (20%), Positives = 121/306 (39%), Gaps = 24/306 (7%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKP------KYSSIVIDVNKNQMTGFKQDEPR 75
           I ++R  + M      +   +  A  L A P         ++V+D     +   K     
Sbjct: 84  ILVERGARPMRAAFVPAAPTLGEAMGLRATPDALALRSSVALVMDQGSGDVLFQKNASAV 143

Query: 76  YP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQG 131
            P AS+TK+MT  ++ +  Q     ++  + +++          S+  L+  T  T E  
Sbjct: 144 LPIASITKLMTALVVTDAHQP----MDELLEITEDDRDYERNTGSR--LRYGTMLTREDL 197

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +L  +  S N  ++A G    G    F   M+ KA ++GM +T Y +++GL   N +++A
Sbjct: 198 LLLALMSSENRAASALGRSYPGGRPAFVAAMNRKAHELGMNDTHYVDSNGLSSSN-VSSA 256

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRY--RNRIIT--NHNKLLNKMHNIDGI-KTGYTR 246
            D + + +   K  P   ++ +  +       R +   N N+L+       G+ KTG+  
Sbjct: 257 MDLSKIVMAAYK-VPLIRQFTTTAEHTVNANGRTLHYVNTNRLVRGGEWEIGLQKTGFIN 315

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSS 306
            +G  +V         +V V +    +  R   A+ +    LE+       T     L +
Sbjct: 316 EAGRCLVMQANVHGRNVVMVFLDSAGNLTRFADAVRVRNW-LERSPHVEAPTQAATPLRN 374

Query: 307 TSLKKS 312
             + + 
Sbjct: 375 VPVSQP 380


>gi|73663386|ref|YP_302167.1| penicillin binding protein 4 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495901|dbj|BAE19222.1| penicillin binding protein 4 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 431

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 72/359 (20%), Positives = 139/359 (38%), Gaps = 49/359 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMA-----SELHAKPKYSSIVIDV----------NKNQMTG 68
           +++ I  +  +LF+  I+   A     +   A  +Y   V D              Q+  
Sbjct: 1   MRKFILTIITVLFVGTIITPFAQAESITPTQAANQYGYNVTDSYQPEGAINVSQTGQLLY 60

Query: 69  -FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKLYLKEK 123
            +  ++  YPAS+TK+MT+Y+  E +    L LN ++ ++            S   L   
Sbjct: 61  QYNINKTWYPASMTKLMTMYLTLEAVNKGDLSLNDKVKITDEHYRMSTLPELSNTKLYPG 120

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
             +T ++ +   ++ S+N  +    + +SG+   F   M++KAK +GM++T + N +G  
Sbjct: 121 ETYTIKELLQITVSNSSNAAALILAKEVSGNLSDFTDKMNSKAKSLGMKDTHFVNPTGAE 180

Query: 184 DK--------------NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
           +K              N  +TA+D  IL     ++ P+   +                N 
Sbjct: 181 NKQLKDFAPKKYKNEDNNTSTAKDFGILSQHAVQDTPKILDFTKQLAPTQHGVTYYTFNH 240

Query: 230 LLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------SQERDQK 279
            L      +   DG+KTG +  + +N   + +     I  V+MG          ++R+  
Sbjct: 241 SLEGADMSLEGTDGLKTGSSDIADYNHTITTKRDGFRINQVIMGAGDYKNLGGEKQRNMI 300

Query: 280 ALELITSFLEKKTLKH--QQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI---DAKAH 333
              L+    ++        +  +K N  +  ++K L     K       K+   D KAH
Sbjct: 301 GNGLMNMSFDQYKYTKILSKGEQKINGKTYFVEKDLYDVLPKDFDKNDYKVVIEDDKAH 359


>gi|300821762|ref|ZP_07101907.1| beta-lactamase [Escherichia coli MS 119-7]
 gi|309793012|ref|ZP_07687440.1| beta-lactamase [Escherichia coli MS 145-7]
 gi|331678083|ref|ZP_08378758.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli H591]
 gi|300525604|gb|EFK46673.1| beta-lactamase [Escherichia coli MS 119-7]
 gi|308123298|gb|EFO60560.1| beta-lactamase [Escherichia coli MS 145-7]
 gi|331074543|gb|EGI45863.1| penicillin-binding protein 7 (PBP-7)
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Escherichia coli H591]
          Length = 312

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 117/278 (42%), Gaps = 26/278 (9%)

Query: 28  IQLMGKILFLSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQDE-PRYP 77
           + L    L L++ +   A    A             S++++D+N N++      +  R  
Sbjct: 9   VSLFSLALMLAVPLAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPI 68

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           AS++K+MT  ++ +     +L L+ +  + +S+T          ++  +  + +  +L  
Sbjct: 69  ASISKLMTAMVVLDA----RLPLDEKLKVDISQTP-EMKGVYSRVRLNSEISRKDMLLLA 123

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S N  + +      G  K F   M+ KAK +GM NT +   +GL   N ++TARD  
Sbjct: 124 LMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHN-VSTARDLT 182

Query: 196 ILGILLRKNFPQYYKYFSIRK--FRYRNRIIT----NHNKLLNKM-HNIDGIKTGYTRNS 248
            L ++  K +P   +  + R+    + N   T    N N L+ +   NI   KTG+T  +
Sbjct: 183 KL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAA 241

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           G  +V      + P+  VVM           A  L T 
Sbjct: 242 GHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 279


>gi|153826719|ref|ZP_01979386.1| penicillin-binding protein 5 [Vibrio cholerae MZO-2]
 gi|149739506|gb|EDM53740.1| penicillin-binding protein 5 [Vibrio cholerae MZO-2]
          Length = 194

 Score =  185 bits (470), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 93/189 (49%), Gaps = 4/189 (2%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASL 80
             ++ ++  M  +  L    +++  E         ++ID +  ++           PASL
Sbjct: 6   FLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPASL 65

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALIT 137
           TK+MT Y+  + ++   +H + ++ +S  A  +   + SK++++  TY         LI 
Sbjct: 66  TKLMTSYVAGQEMKRGNIHADDKVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLIV 125

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +S ND S A  E ++GSE  F  LM++ A+++GM N+ + N  GL +    +T  D A+L
Sbjct: 126 QSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIALL 185

Query: 198 GILLRKNFP 206
           G  + ++ P
Sbjct: 186 GRAIIRDLP 194


>gi|239636745|ref|ZP_04677747.1| penicillin-binding protein 4 [Staphylococcus warneri L37603]
 gi|239598100|gb|EEQ80595.1| penicillin-binding protein 4 [Staphylococcus warneri L37603]
          Length = 429

 Score =  185 bits (470), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 69/320 (21%), Positives = 128/320 (40%), Gaps = 49/320 (15%)

Query: 24  IQRNIQLMGKILFLSIIMISMASE-------------------LHAKPKYSSIVIDVNKN 64
           ++R  +L+  + F+  I+   A+                      A    S+I +  +  
Sbjct: 1   MKRIFKLIITMFFVLNIITPFANAENGDVTPVQVAIDNGYSKVTEAYQPESAINVSQD-G 59

Query: 65  QMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKLY 119
           Q+     +D+  YPAS+TK+MT+Y+  E ++ KKL LN ++ ++            S   
Sbjct: 60  QILYEYNKDKVWYPASMTKLMTMYLTLEAVKDKKLSLNDEVKITDREYQMSTLPELSNTK 119

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           L     +T    +   ++ S+N  +   GE +SG+   F  LM+ KAK++GM++T Y N 
Sbjct: 120 LYPGQKWTISDLLQITVSNSSNAAALILGEQVSGNVNDFTDLMNKKAKELGMKDTHYVNP 179

Query: 180 SGLHD--------------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
           +G  +              +N  TTARD AIL   +    P+   +              
Sbjct: 180 TGAENARLKSFAPSKYKKTENTTTTARDYAILDQHVINETPKILHFTKQLAPTTHGVTYY 239

Query: 226 NHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------SQE 275
             N  L+     +   DG+KTG +  + +N   + +     I  V++G          ++
Sbjct: 240 TFNHSLDGADMSLPGTDGLKTGSSDTADYNHTITTKRNGFRINQVILGAGDYKHIGGEKQ 299

Query: 276 RDQKALELITSFLEKKTLKH 295
           R+     L+     +   + 
Sbjct: 300 RNMMGNALMERSFSQYKYEK 319


>gi|116874163|ref|YP_850944.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|116743041|emb|CAK22165.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 273

 Score =  185 bits (470), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 113/240 (47%), Gaps = 7/240 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++ V  +N  +    K  +   P AS+TK+MT +++ E ++  +L  + ++ + +     
Sbjct: 33  AAAVYSMNDKKAISEKNSDKVMPIASITKLMTTFLVLEAVKKGELSWDEKLDLIRLDDPS 92

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   + +K  ++      A++  SAND +   G  + G    F   M+ +AKK+G+ N
Sbjct: 93  AVSLYAITKKRTWSVRDLYSAMLVMSANDAAETLGNRLDG--ADFPKKMNKEAKKLGLSN 150

Query: 174 -TIYKNASGLHDKN--QITTARDQAILGILLRKNFPQYYKYFSIRKF-RYRNRIITNHNK 229
            T + +ASGL       ++T +D   L   L   +P+     S       +   I + N 
Sbjct: 151 KTEFVSASGLDVDGERSVSTTKDLYKLSSELISTYPEVLDTTSKSSIITEKGAKIESTND 210

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           L+  +  +DG+KTG+T  +G+  + + +     ++++V+   T++ R +   +LI    +
Sbjct: 211 LIGTIPGLDGLKTGFTDEAGYCFIGTAKQNGKRVISIVLNSDTAENRFKDTEKLIKLGFK 270


>gi|193076105|gb|ABO10712.2| D-alanyl-D-alanine endopeptidase penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter baumannii
           ATCC 17978]
          Length = 348

 Score =  185 bits (470), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 111/253 (43%), Gaps = 18/253 (7%)

Query: 49  HAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +A+P  S+   +V+D    ++   K  +     AS+TK+MT  +  +     +L+++ +I
Sbjct: 97  NAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKLMTAVVTADA----RLNMSEEI 152

Query: 105 PVSKTAATQNP---SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
            + +          S   L+        + +L  + +S N  + A      G    F   
Sbjct: 153 TLEQIDFAGAGGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAA 212

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR- 220
           M+ KA+ +GM  T Y  ++GL D   +++ARD  IL     + +    ++ +   + +  
Sbjct: 213 MNAKARALGMNATHYYESTGL-DPRNVSSARDLGILASTASQ-YGLIRQFSTTPTYDFNL 270

Query: 221 -NRII--TNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
             R++   N N L+ N   NI+  KTGY   +G  +V        P V V++G P++Q R
Sbjct: 271 GYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEPSTQAR 330

Query: 277 DQKALELITSFLE 289
           +  A  L+     
Sbjct: 331 NNDATNLLGWLSN 343


>gi|194449016|ref|YP_002046221.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194469108|ref|ZP_03075092.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736053|ref|YP_002115257.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197262067|ref|ZP_03162141.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197300824|ref|ZP_02661392.2| D-alanyl-D-alanine endopeptidase (DD-endopeptidase) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197361849|ref|YP_002141485.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198244375|ref|YP_002216252.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200387930|ref|ZP_03214542.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204929084|ref|ZP_03220227.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205353306|ref|YP_002227107.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205357645|ref|ZP_02572191.2| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205358255|ref|ZP_02654578.2| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205360216|ref|ZP_02681467.2| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|213584224|ref|ZP_03366050.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213647182|ref|ZP_03377235.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213852329|ref|ZP_03381861.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|194407320|gb|ACF67539.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194455472|gb|EDX44311.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194711555|gb|ACF90776.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197093325|emb|CAR58773.1| penicillin-binding protein 7 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197240322|gb|EDY22942.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197290536|gb|EDY29891.1| D-alanyl-D-alanine endopeptidase (DD-endopeptidase) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197938891|gb|ACH76224.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199605028|gb|EDZ03573.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321628|gb|EDZ06827.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205273087|emb|CAR38040.1| penicillin-binding protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205330584|gb|EDZ17348.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205335922|gb|EDZ22686.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205350646|gb|EDZ37277.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|261247382|emb|CBG25207.1| penicillin-binding protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|301158730|emb|CBW18242.1| penicillin-binding protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
          Length = 302

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNT--QIPVSKTAA 111
           S++++D+N N++      +  R  AS+TK+MT  ++ +     +L L+   ++ +S+T  
Sbjct: 29  SAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDA----RLPLDEILKVDISQTP- 83

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +   +  G    F   M+ KAK +GM
Sbjct: 84  EMKGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGM 143

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT-- 225
            +T +   +GL   N ++TARD   L ++  K +P   +  + R+    F +    +   
Sbjct: 144 THTRFVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTREDMATFSHPAYTLPFR 201

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L 
Sbjct: 202 NTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLR 261

Query: 285 TS 286
           T 
Sbjct: 262 TW 263


>gi|237732182|ref|ZP_04562663.1| D-alanyl-D-alanine endopeptidase [Citrobacter sp. 30_2]
 gi|226907721|gb|EEH93639.1| D-alanyl-D-alanine endopeptidase [Citrobacter sp. 30_2]
          Length = 314

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 109/243 (44%), Gaps = 19/243 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAA 111
           S++++D+N N++      +  R  AS+TK+MT  ++ +     +L L+ +  + +S+T  
Sbjct: 41  SAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDA----RLPLDEKLKVDISQTPE 96

Query: 112 TQNP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   S++ L   +  + +  +L  +  S N  + +      G    F   M+ KAK +G
Sbjct: 97  MKGIYSRVRL--NSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNAKAKALG 154

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIIT--- 225
           M  T +   +GL   N ++TARD   L ++  K +P   +  + R+    + N   T   
Sbjct: 155 MTQTRFVEPTGLSIHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFANPAYTLPF 212

Query: 226 -NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            N N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L
Sbjct: 213 RNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRL 272

Query: 284 ITS 286
            T 
Sbjct: 273 RTW 275


>gi|238794079|ref|ZP_04637696.1| D-alanyl-D-alanine endopeptidase [Yersinia intermedia ATCC 29909]
 gi|238726584|gb|EEQ18121.1| D-alanyl-D-alanine endopeptidase [Yersinia intermedia ATCC 29909]
          Length = 311

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 109/269 (40%), Gaps = 24/269 (8%)

Query: 37  LSIIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           +S+I ++ AS   A+            S++V+D+  N++      DE    AS+TK+MT 
Sbjct: 19  ISVIPLATASGGMAEIKGKAPLELASGSAMVVDLQTNKVIYANNADEVVPIASITKLMTA 78

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
            ++ +     KL L+  I V              ++  +  + +  +L  +  S N  + 
Sbjct: 79  MVVLDA----KLPLDEIISVDIHQTKEMKGVFSRVRVNSEISRKDMLLLALMSSENRAAA 134

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           +      G    F   M+ KAK +GM  T Y   +GL   + ++TARD   L ++  K +
Sbjct: 135 SLAHHYPGGYNAFIKAMNVKAKSLGMTKTRYVEPTGLSI-DNVSTARDLTKL-LMATKQY 192

Query: 206 PQYYKYFSIRK----FRYRNRIIT--NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRY 258
           P   +  +  +    FR  N  +   N N L+     NI   KTG+T  +G  +      
Sbjct: 193 PLIGQLSTTTEKMATFRDPNYTLPFRNTNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVI 252

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSF 287
            + P+  VV+           A  L +  
Sbjct: 253 GNRPVALVVLDAFGKYTHFADANRLRSWM 281


>gi|323213518|gb|EFZ98309.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
          Length = 278

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNT--QIPVSKTAA 111
           S++++D+N N++      +  R  AS+TK+MT  ++ +     +L L+   ++ +S+T  
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDA----RLPLDEILKVDISQTP- 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +   +  G    F   M+ KAK +GM
Sbjct: 97  EMKGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGM 156

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT-- 225
            +T +   +GL   N ++TARD   L ++  K +P   +  + R+    F +    +   
Sbjct: 157 THTRFVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTREDMATFSHPAYTLPFR 214

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L 
Sbjct: 215 NTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLR 274

Query: 285 TS 286
           T 
Sbjct: 275 TW 276


>gi|225026550|ref|ZP_03715742.1| hypothetical protein EUBHAL_00799 [Eubacterium hallii DSM 3353]
 gi|224956099|gb|EEG37308.1| hypothetical protein EUBHAL_00799 [Eubacterium hallii DSM 3353]
          Length = 491

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 69/269 (25%), Positives = 120/269 (44%), Gaps = 25/269 (9%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSK 96
            I  +S A ++ A+   S++V+D N   +   K+ D  RYPAS+TK+MT  +  E  +  
Sbjct: 68  GISNLSGAPDIVAE---SAVVMDANTGTILYGKEADTKRYPASITKVMTALLAVENCK-- 122

Query: 97  KLHLNTQIPVSKTAAT---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
              ++  I  S  A        S   +      T E  + AL+  SAN+ + A  E ISG
Sbjct: 123 ---MSDVITYSNAAVNGIEAGSSTAGINVGAKLTVEDSLYALMLVSANEAAAAIAEHISG 179

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           S  +FA LM+ +AK++G  NT +KN  GL ++   TTA D  ++     K   ++ K   
Sbjct: 180 STTEFAKLMTKRAKELGCTNTQFKNPHGLPNEEHYTTAHDMGLILKEAMK-HEEFRKISG 238

Query: 214 IRKFRYRNR-------IITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
              +  +          + NH K+L +         +G KTG+T+ +   +VT  +  + 
Sbjct: 239 TISYTLKKSDTLKDTLELWNHAKILRENSDYYYKYAEGAKTGFTQVALNTLVTYAKKDNV 298

Query: 262 PIVAVVMGMPTSQERDQKALELITSFLEK 290
            ++ V++    + +       L      +
Sbjct: 299 ELICVILKDYGADKSYTDTANLFKWAFNQ 327


>gi|238788777|ref|ZP_04632568.1| D-alanyl-D-alanine endopeptidase [Yersinia frederiksenii ATCC
           33641]
 gi|238723082|gb|EEQ14731.1| D-alanyl-D-alanine endopeptidase [Yersinia frederiksenii ATCC
           33641]
          Length = 322

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 97/241 (40%), Gaps = 15/241 (6%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S++VID+  N++      DE    AS+TK+MT  ++ +     KL L+  I V       
Sbjct: 57  SAMVIDLQTNKVIYSNNADEVVPIASITKLMTAMVVLDA----KLPLDEIISVDIHQTKE 112

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  ++  +  + +  +L  +  S N  + +      G    F   M+ KAK +GM 
Sbjct: 113 MKGVYSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNAKAKSLGMT 172

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT--N 226
            T Y   +GL     ++TARD   L ++  K +P   +  +  +    FR  N  +   N
Sbjct: 173 KTRYVEPTGLSI-GNVSTARDLTKL-LVATKQYPLIGQLSTTTEKMATFRDPNYTLPFRN 230

Query: 227 HNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+     NI   KTG+T  +G  +         P+  VV+           A  L +
Sbjct: 231 TNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGHRPVALVVLDAFGKYTHFADANRLRS 290

Query: 286 S 286
            
Sbjct: 291 W 291


>gi|332097490|gb|EGJ02470.1| D-alanyl-D-alanine endopeptidase [Shigella boydii 3594-74]
          Length = 292

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/256 (23%), Positives = 111/256 (43%), Gaps = 17/256 (6%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLH 99
             ++ +        S++++D+N N++      +  R  AS++K+MT  ++ +     +L 
Sbjct: 10  AAAITASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDA----RLP 65

Query: 100 LNT--QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           L+   ++ +S+T          ++  +  + +  +L  +  S N  + +      G  K 
Sbjct: 66  LDEKLKVDISQTP-EMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKA 124

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK- 216
           F   M+ KAK +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+ 
Sbjct: 125 FIKAMNAKAKSLGMNNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTRED 182

Query: 217 -FRYRNRIIT----NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
              + N   T    N N L+ +   NI   KTG+T  +G  +V      + P+  VVM  
Sbjct: 183 MATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDA 242

Query: 271 PTSQERDQKALELITS 286
                    A  L T 
Sbjct: 243 FGKYTHFADASRLRTW 258


>gi|254302479|ref|ZP_04969837.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148322671|gb|EDK87921.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 426

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 73/256 (28%), Positives = 123/256 (48%), Gaps = 12/256 (4%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++++   K  +   K  +  YP AS+TKMM+L + F+ + +  + L+  + +SK      
Sbjct: 173 AVIVGDTKGNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGNISLSDSVRISKNPLKYG 232

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQN 173
            S + LK    F  E  I A    SAN+ + A  E++  GS   F   M+ K K++G+QN
Sbjct: 233 GSGIPLKAGQIFILEDLIKASAVYSANNATYAIAEYVGNGSVFGFVAKMNRKLKELGLQN 292

Query: 174 -TIYKNASGLHD-----KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIIT 225
              Y   +GL            TAR    L I   K + +Y +   I+K +  N    I 
Sbjct: 293 EIRYHTPAGLPTRVTKQPMDEGTARGIYKLSIEALK-YKKYIEIAGIKKTKIYNEKISIR 351

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N N L+ + + + GIKTG+ + + +NI  + +++D  ++ VVMG  T + RD   L ++ 
Sbjct: 352 NRNHLIGE-NGVYGIKTGFHKEAKYNIAVASKFEDTDVIIVVMGGETYKTRDGIVLSVLD 410

Query: 286 SFLEKKTLKHQQTHRK 301
                 T+K+    RK
Sbjct: 411 ILNNNYTVKNGLIKRK 426


>gi|317500835|ref|ZP_07959047.1| hypothetical protein HMPREF1026_00990 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316897715|gb|EFV19774.1| hypothetical protein HMPREF1026_00990 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 503

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 109/236 (46%), Gaps = 26/236 (11%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+IV+++N   +   K+ ++  YPAS+TK++T  +  E         + ++  S+ + 
Sbjct: 55  ANSAIVMEMNSGAILYGKKINDKHYPASITKLLTALVALENADP-----DDEVYFSEDSV 109

Query: 112 T---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG----EFISGSEKKFAILMSN 164
           +      + + ++     +    +  ++  SAN+VS A      + + G  + F   M+ 
Sbjct: 110 SFLEYGDASIGMRPGEILSMNDALYGMLLASANEVSYAIAESVGKKMGGGFETFIQKMNE 169

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII 224
           + +++G   + + NA+GLHD+N  TTA D A++G  + + F ++ +      +      +
Sbjct: 170 RCEELGCTGSHWTNANGLHDENHYTTAHDMALIGSAVYQ-FDKFREVTQTLNYTIPPTNL 228

Query: 225 TN-------HNKLLN-----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            N       ++K+L            G KTGYT  +   +VT     D  +VAVV+
Sbjct: 229 VNESRTFQQNHKMLWVGAHYSYDYCTGGKTGYTDQAKTTLVTMADNADMQLVAVVL 284


>gi|171059568|ref|YP_001791917.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Leptothrix
           cholodnii SP-6]
 gi|170777013|gb|ACB35152.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Leptothrix
           cholodnii SP-6]
          Length = 323

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 98/244 (40%), Gaps = 14/244 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + VID   +++   K  +   P ASLTK+MT  ++ E  Q     L+  + VS+      
Sbjct: 69  AFVIDQETSEVLFSKNPQAVLPIASLTKLMTALVVVEAGQP----LDEILEVSEADVDTE 124

Query: 115 P-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+  L   T  T E  +   +  S N  + A G    G    F   M+ KA  +GM +
Sbjct: 125 KFSRSRLAVGTRLTREDMLHLALMSSENRAAHALGRHFPGGLNAFVDAMNFKAASLGMAD 184

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T Y   +GL  +NQ  +A D A L       +P    + +  +       R     N N 
Sbjct: 185 THYVEPTGLSSRNQA-SAPDLARLVKAA-YAYPLLRDFSTTPEAEVEVGRRTMQFRNTNG 242

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           L+ N   +I   KTGY   +G  +V   ++    ++ V +       R   A   +  +L
Sbjct: 243 LIRNPTWDIGLQKTGYIVEAGRCLVMQAKFAGRQLIMVFLDSTGKYSRLGDAER-VRRWL 301

Query: 289 EKKT 292
           E  T
Sbjct: 302 ESDT 305


>gi|283785939|ref|YP_003365804.1| penicillin-binding protein 7 [Citrobacter rodentium ICC168]
 gi|282949393|emb|CBG89005.1| penicillin-binding protein 7 [Citrobacter rodentium ICC168]
          Length = 308

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 64/279 (22%), Positives = 124/279 (44%), Gaps = 28/279 (10%)

Query: 28  IQLMGKILFLSIIMISMAS------ELHAKPKY---SSIVIDVNKNQMTGFKQDE-PRYP 77
           + ++   L L++     A+       + ++P+    S++++D+N N++      +  R  
Sbjct: 6   VSILSLALMLAVPFAPQAAVKATATTVASQPEIASGSAMIVDLNTNKVIYANHPDLVRPI 65

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQNP-SKLYLKEKTYFTTEQGILA 134
           AS+TK+MT  ++ +     +L L+ +  + +S+T   +   S++ L   +  + +  +L 
Sbjct: 66  ASITKLMTAMVVLDA----RLPLDEKLKVDISQTPEMKGIYSRVRL--NSEISRKNMLLL 119

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + +      G    F   M+ KAK +GM +T +   +GL   N ++TARD 
Sbjct: 120 ALMSSENRAAASLAHHYPGGYNAFIKAMNAKAKALGMSHTRFVEPTGLSIHN-VSTARDL 178

Query: 195 AILGILLRKNFPQYYKYFSIRK--FRYRNRIIT----NHNKLLNKM-HNIDGIKTGYTRN 247
             L ++  K +P   +  + R+    + N   T    N N L+ +   NI   KTG+T  
Sbjct: 179 TRL-LIASKQYPLIGQLSTTREDMATFSNPAYTLPFRNTNHLVYRDNWNIQLTKTGFTNA 237

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           +G  +V      + P+  VVM           A  L T 
Sbjct: 238 AGHCLVMRTLINNKPVALVVMDAFGKYTHFADASRLRTW 276


>gi|289809759|ref|ZP_06540388.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 278

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNT--QIPVSKTAA 111
           S++++D+N N++      +  R  AS+TK+MT  ++ +     +L L+   ++ +S+T  
Sbjct: 29  SAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDA----RLPLDEILKVDISQTP- 83

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +   +  G    F   M+ KAK +GM
Sbjct: 84  EMKGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGM 143

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT-- 225
            +T +   +GL   N ++TARD   L ++  K +P   +  + R+    F +    +   
Sbjct: 144 THTRFVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTREDMATFSHPAYTLPFR 201

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L 
Sbjct: 202 NTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLR 261

Query: 285 TS 286
           T 
Sbjct: 262 TW 263


>gi|221198438|ref|ZP_03571484.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           multivorans CGD2M]
 gi|221208885|ref|ZP_03581882.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           multivorans CGD2]
 gi|221171168|gb|EEE03618.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           multivorans CGD2]
 gi|221182370|gb|EEE14771.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           multivorans CGD2M]
          Length = 381

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 101/249 (40%), Gaps = 14/249 (5%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            +  A     + V+D N  +    K      P AS++K+MT  ++ +     K  +  QI
Sbjct: 120 PDALALRSSVAYVVDQNTGEPLFDKNSHAVVPIASISKLMTAMVVLDS----KAPMTEQI 175

Query: 105 PVSKTAATQN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            V+         +   L   +  + E  +   +  S N  + A   +  G    F   M+
Sbjct: 176 EVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMN 235

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY---- 219
            KAK +GM +T ++N++GL   N +++ARD   +     + +P   K+ + R +      
Sbjct: 236 AKAKALGMTDTHFENSTGLSSSN-VSSARDLVKMVNAAYQ-YPLIRKFSTDRTYEVYTGK 293

Query: 220 RNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           RN +  + N L+  N   +I   KTG+   +G  +V        P+V V++       R 
Sbjct: 294 RNLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGRPVVMVLLDSFGKYSRF 353

Query: 278 QKALELITS 286
             A  L   
Sbjct: 354 ADASRLRNW 362


>gi|161613143|ref|YP_001587108.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161362507|gb|ABX66275.1| hypothetical protein SPAB_00851 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 313

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNT--QIPVSKTAA 111
           S++++D+N N++      +  R  AS+TK+MT  ++ +     +L L+   ++ +S+T  
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDA----RLPLDEILKVDISQTP- 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +   +  G    F   M+ KAK +GM
Sbjct: 97  EMKGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGM 156

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT-- 225
            +T +   +GL   N ++TARD   L ++  K +P   +  + R+    F +    +   
Sbjct: 157 THTRFVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTREDMATFSHPAYTLPFR 214

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L 
Sbjct: 215 NTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLR 274

Query: 285 TS 286
           T 
Sbjct: 275 TW 276


>gi|16765498|ref|NP_461113.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|168242251|ref|ZP_02667183.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168466155|ref|ZP_02700025.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|194445434|ref|YP_002041439.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|197251040|ref|YP_002147139.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|207857603|ref|YP_002244254.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213161142|ref|ZP_03346852.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213428230|ref|ZP_03360980.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|224583331|ref|YP_002637129.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238912611|ref|ZP_04656448.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|16420704|gb|AAL21072.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|194404097|gb|ACF64319.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|195631155|gb|EDX49715.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197214743|gb|ACH52140.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|205338411|gb|EDZ25175.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|206709406|emb|CAR33747.1| penicillin-binding protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467858|gb|ACN45688.1| D-alanyl-D-alanine endopeptidase; penicillin-binding protein 7 and
           penicillin-binding protein 8 [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|267994231|gb|ACY89116.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|312913159|dbj|BAJ37133.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224821|gb|EFX49884.1| Murein-DD-endopeptidase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322615196|gb|EFY12118.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617787|gb|EFY14683.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624619|gb|EFY21450.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626930|gb|EFY23726.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634116|gb|EFY30852.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635693|gb|EFY32403.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640172|gb|EFY36836.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646405|gb|EFY42917.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649373|gb|EFY45809.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656493|gb|EFY52782.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322661469|gb|EFY57693.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665643|gb|EFY61827.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667167|gb|EFY63334.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671173|gb|EFY67301.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675187|gb|EFY71264.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680795|gb|EFY76830.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686970|gb|EFY82947.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323130495|gb|ADX17925.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323192734|gb|EFZ77961.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198834|gb|EFZ83933.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323205156|gb|EFZ90134.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208199|gb|EFZ93143.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323215776|gb|EGA00519.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222875|gb|EGA07231.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323223859|gb|EGA08162.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231222|gb|EGA15337.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233656|gb|EGA17748.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237726|gb|EGA21786.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245709|gb|EGA29703.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248926|gb|EGA32850.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253002|gb|EGA36835.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323258678|gb|EGA42340.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259510|gb|EGA43145.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323268293|gb|EGA51768.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271918|gb|EGA55334.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624002|gb|EGE30347.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326628395|gb|EGE34738.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332989102|gb|AEF08085.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 315

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNT--QIPVSKTAA 111
           S++++D+N N++      +  R  AS+TK+MT  ++ +     +L L+   ++ +S+T  
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDA----RLPLDEILKVDISQTP- 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +   +  G    F   M+ KAK +GM
Sbjct: 97  EMKGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGM 156

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT-- 225
            +T +   +GL   N ++TARD   L ++  K +P   +  + R+    F +    +   
Sbjct: 157 THTRFVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTREDMATFSHPAYTLPFR 214

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L 
Sbjct: 215 NTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLR 274

Query: 285 TS 286
           T 
Sbjct: 275 TW 276


>gi|170767319|ref|ZP_02901772.1| penicillin-binding protein 7 [Escherichia albertii TW07627]
 gi|170123653|gb|EDS92584.1| penicillin-binding protein 7 [Escherichia albertii TW07627]
          Length = 312

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 108/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAA 111
           S++++D+N N++      +  R  AS++K+MT  ++ +     +L L+ +  + +S+T  
Sbjct: 45  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDA----RLPLDEKLKVDISQTP- 99

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +      G  K F   M+ KAK +GM
Sbjct: 100 EMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGM 159

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIIT---- 225
            NT +   +GL   N ++TARD   L ++  K +P   +  + R+    + N   T    
Sbjct: 160 NNTRFVEPTGLSVHN-VSTARDLTKL-LIATKQYPLIGQLSTTREDMATFSNPTYTLPFR 217

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L 
Sbjct: 218 NTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLR 277

Query: 285 TS 286
           T 
Sbjct: 278 TW 279


>gi|125718743|ref|YP_001035876.1| penicillin-binding protein 3 [Streptococcus sanguinis SK36]
 gi|125498660|gb|ABN45326.1| Penicillin-binding protein 3, putative [Streptococcus sanguinis
           SK36]
          Length = 419

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/345 (19%), Positives = 138/345 (40%), Gaps = 44/345 (12%)

Query: 31  MGKILFLSIIMISMASELHAK-----PKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMM 84
           M ++    ++++ M +   A         S++ +D    ++   K    P    S+T ++
Sbjct: 1   MKRLFLCLLVLVGMTASKVAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLL 60

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           T+Y+++E +    L  +T + +S  A    A  N S + L+ K  +  +  I A +  S+
Sbjct: 61  TVYLVYEAIDRGDLTADTYVDISDYAYNLTANPNISNVPLEAK-RYKVKDLIAASLMSSS 119

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------------- 183
           N  + A  E + GSE+ F  +M  K K+ G+++    N++GL+                 
Sbjct: 120 NSATIALAEKVGGSEENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETDYTSTA 179

Query: 184 ----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL----NKMH 235
               D     +A D A++   L  +FPQ     S    +     + N+N +L    N   
Sbjct: 180 KKSKDTENKFSAYDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSNFRS 239

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELIT----SF 287
            +DG+K G +   G + V +       ++ VV+ +         R      L+     +F
Sbjct: 240 GVDGLKAGSSDKGGSSFVATTTENGIRMITVVLDVEQTDGDPYARFVATASLMNYVSQNF 299

Query: 288 LEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
            +   +   + + K   +    K+  +     + ++  ++I  +A
Sbjct: 300 TQTTIVAEGEAYNKSKSTVIDGKQKTVPAVASKDFTIIERIANQA 344


>gi|262280670|ref|ZP_06058453.1| D-alanyl-D-alanine endopeptidase [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257570|gb|EEY76305.1| D-alanyl-D-alanine endopeptidase [Acinetobacter calcoaceticus
           RUH2202]
          Length = 348

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/256 (24%), Positives = 114/256 (44%), Gaps = 18/256 (7%)

Query: 46  SELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           S  +A+P  S+   +V+D    ++   K  +     AS+TK+MT  +  +     +L+++
Sbjct: 94  SGYNAQPSVSARAALVMDAQTGEVLFSKNTNASVPIASITKLMTAVVTADA----RLNMS 149

Query: 102 TQIP---VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            +I    +    A    S   L+        + +L  + +S N  + A      G    F
Sbjct: 150 EEIMLEQIDFAGANGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRPAF 209

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
              M++KA+ +GM  T Y  ++GL D   +++ARD  IL     + +    ++ +   + 
Sbjct: 210 VAAMNSKARALGMNATHYYESTGL-DPRNVSSARDLGILASTASQ-YGLIRQFSTTPTYD 267

Query: 219 YR--NRII--TNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           +    R++   N N L+ N   NI+  KTGY   +G  +V        P V V++G P+S
Sbjct: 268 FNLGYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEPSS 327

Query: 274 QERDQKALELITSFLE 289
           Q R+  A  L++    
Sbjct: 328 QARNNDATNLLSWLSN 343


>gi|262164415|ref|ZP_06032153.1| murein-DD-endopeptidase [Vibrio mimicus VM223]
 gi|262026795|gb|EEY45462.1| murein-DD-endopeptidase [Vibrio mimicus VM223]
          Length = 317

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 108/244 (44%), Gaps = 15/244 (6%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KT 109
              S++VID+  N++      D  R  AS+TK+MT  +  +     KL ++T++P++ K 
Sbjct: 47  AANSALVIDLKTNEVIYSSNPDAVRPIASVTKLMTAIVTLDA----KLPMDTKLPITIKE 102

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A         ++  +  + +  +L  +  S N  + +      G  K F   M+NKAK +
Sbjct: 103 AKEMKGVHSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNNKAKAL 162

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------NRI 223
           GM+NT +   +GL +KN +++ARD  +L     K +P   +  +  K          +  
Sbjct: 163 GMKNTRFVEPTGLSEKN-VSSARDLVLLLKA-SKKYPMLGQLSATEKKTVTFAKPRYSLD 220

Query: 224 ITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
             N N+L+ N    ID  KTG+T  +G  +V   +     +  VV+           A  
Sbjct: 221 FRNTNRLVFNDNWKIDLTKTGFTNAAGHCLVMRTQMGKRQVAFVVLDTKGKLSPVGDANR 280

Query: 283 LITS 286
           L T 
Sbjct: 281 LRTW 284


>gi|229177783|ref|ZP_04305157.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
 gi|229189457|ref|ZP_04316474.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
 gi|228594048|gb|EEK51850.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
 gi|228605747|gb|EEK63194.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
          Length = 405

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 68/284 (23%), Positives = 121/284 (42%), Gaps = 21/284 (7%)

Query: 59  IDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K      +PAS TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 32  IDAKTGDVLYDKNAYHRAFPASTTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 86

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ KAK++G +++ 
Sbjct: 87  YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSH 146

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  + ++        T    N +   
Sbjct: 147 FVTPNGLHDPNHYTTPYDMAMITKGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSNFF 205

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I++VVM     +  E  ++  E       
Sbjct: 206 EN-PYSIGGKTGFTNEARNTLVLLNEKDGNRIISVVMASQRPEIYEDLKQMAEYSFGQFT 264

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           K+ +      HQ+T   +   ++ L++S  +   K      K I
Sbjct: 265 KQMVLDKHNWHQKTTYLNKDVNSELEQSAELMLKKDEGKNVKTI 308


>gi|160900293|ref|YP_001565875.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Delftia
           acidovorans SPH-1]
 gi|160365877|gb|ABX37490.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Delftia
           acidovorans SPH-1]
          Length = 365

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 61/247 (24%), Positives = 105/247 (42%), Gaps = 14/247 (5%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLN 101
           ++A  L  K    ++V+D + +++   K D    P ASLTK+MT  +I +      L ++
Sbjct: 104 AVADPLDLKSSV-ALVLDQDTHEVLLSKNDHAVLPIASLTKLMTGLLISQAH----LPMD 158

Query: 102 TQIPVSKTAATQN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
             I +++        S   L   T  T  + +   +  S N  + A G    G    F  
Sbjct: 159 EAITITQDDVDTEKGSSSRLAVGTTLTRGEMLHLALMSSENRAAHALGRTFPGGLDAFVQ 218

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY- 219
            M+ KA+ +GM +T Y   +GL  +NQ ++ARD A+L  +   + P   +Y +   +   
Sbjct: 219 QMNAKARLLGMTDTRYVEPTGLSSRNQ-SSARDLAVLVNVAHSD-PLVREYTTSPGYEVA 276

Query: 220 ---RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
              R     N N+L+ +   +I   KTGY   +G  +V   +     I+ V +       
Sbjct: 277 VGRRTLQYNNTNRLVMSPTWDIGLQKTGYISEAGRCLVMQAQVAGRKIIMVFLDSAGKFS 336

Query: 276 RDQKALE 282
           R   A  
Sbjct: 337 RLGDAER 343


>gi|167551122|ref|ZP_02344877.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205324035|gb|EDZ11874.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 315

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 108/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNT--QIPVSKTAA 111
           S++++D+N N++      +  R  AS+TK+MT  ++ +     +L LN   ++ +S+T  
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDA----RLPLNEILKVDISQTP- 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +   +  G    F   M+ KAK +GM
Sbjct: 97  EMKGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYDAFIKAMNAKAKALGM 156

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT-- 225
            +T +   +GL   N ++TARD   L ++  K +P   +  + R+    F +    +   
Sbjct: 157 THTRFVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTREDMATFSHPAYTLPFR 214

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L 
Sbjct: 215 NTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLR 274

Query: 285 TS 286
           T 
Sbjct: 275 TW 276


>gi|325523666|gb|EGD01938.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. TJI49]
          Length = 372

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 101/249 (40%), Gaps = 14/249 (5%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            +  A     + V+D N  +    K      P AS++K+MT  ++ +     K  +  QI
Sbjct: 111 PDALALRSSVAYVVDQNTGEPLFDKNSHAVVPIASISKLMTAMVVLDS----KAPMTDQI 166

Query: 105 PVSKTAATQN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            V+         +   L   +  + E  +   +  S N  + A   +  G    F   M+
Sbjct: 167 EVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMN 226

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY---- 219
            KAK +GM +T ++N++GL   N +++ARD   +     + +P   ++ + R +      
Sbjct: 227 AKAKALGMTDTHFENSTGLSSSN-VSSARDLVKMVNAAYQ-YPLIRQFSTDRTYEVYTGK 284

Query: 220 RNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           RN +  + N L+  N   +I   KTG+   +G  +V        P+V V++       R 
Sbjct: 285 RNLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGRPMVMVLLDSFGKYSRF 344

Query: 278 QKALELITS 286
             A  L   
Sbjct: 345 ADASRLRNW 353


>gi|228932656|ref|ZP_04095531.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827028|gb|EEM72787.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 407

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 68/282 (24%), Positives = 121/282 (42%), Gaps = 21/282 (7%)

Query: 59  IDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K    R +PAS+TK++T  ++ E+ +        Q  +S+ A  Q  S 
Sbjct: 34  IDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTLSQLALDQEKSN 88

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ 
Sbjct: 89  YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSH 148

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  + ++        T    N +   
Sbjct: 149 FVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYF 207

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I+ VVM     +  E  ++  +       
Sbjct: 208 EN-PFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMADYSFGQFV 266

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
           K+T+      HQ+T   +    + L+KS  +   K      K
Sbjct: 267 KQTVLDKHSWHQKTTYLNKDIESELEKSAELMLKKDEGKNVK 308


>gi|332359810|gb|EGJ37624.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK1056]
          Length = 422

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/348 (18%), Positives = 138/348 (39%), Gaps = 47/348 (13%)

Query: 31  MGKILFLSIIMISMASELHAK-----PKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMM 84
           M ++    ++++ M +   A         S++ +D    ++   K    P    S+T ++
Sbjct: 1   MKRLFLCLLVLVGMTASKVAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLL 60

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           T+Y+++E +    L  +T + +S  A    A  N S + L+ K  +  +  I A +  S+
Sbjct: 61  TVYLVYEAIDRGDLTADTYVDISDYAYNLTANPNISNVPLEAK-RYKVKDLIAASLMSSS 119

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------------- 183
           N  + A  E + GSE+ F  +M  K K+ G+++    N++GL+                 
Sbjct: 120 NSATIALAEKVGGSEENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYSASA 179

Query: 184 -------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL----N 232
                  D     +A D A++   L  +FPQ     S    +     + N+N +L    N
Sbjct: 180 STSKKSKDTENKFSAYDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSN 239

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELIT--- 285
               +DG+K G +   G + V +       ++ VV+ +         R      L+    
Sbjct: 240 FRSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVLDVEQTDGDPYARFVATASLMNYVS 299

Query: 286 -SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
            +F +   +   + + K   +    K+  +     + ++  ++I  +A
Sbjct: 300 QNFTQTTIVAEGEAYNKSKSTVIDGKQKTVPAVASKDFTIIERIANQA 347


>gi|283832440|ref|ZP_06352181.1| penicillin-binding protein 7 [Citrobacter youngae ATCC 29220]
 gi|291072100|gb|EFE10209.1| penicillin-binding protein 7 [Citrobacter youngae ATCC 29220]
          Length = 315

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 113/257 (43%), Gaps = 19/257 (7%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLH 99
             ++A+        S++++D+N N++      +  R  AS+TK+MT  ++ +     +L 
Sbjct: 28  ATTVAASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDA----RLP 83

Query: 100 LNTQ--IPVSKTAATQNP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           LN +  + +S+T   +   S++ L   +  + +  +L  +  S N  + +      G   
Sbjct: 84  LNEKLKVDISQTPEMKGIYSRVRL--NSEISRKDMLLLALMSSENRAAASLAHHYPGGYN 141

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F   M+ KAK +GM  T +   +GL   N ++TARD   L ++  K +P   +  + R+
Sbjct: 142 AFIKAMNAKAKALGMTQTRFVEPTGLSIHN-VSTARDLTKL-LIASKQYPLIGQLSTTRE 199

Query: 217 --FRYRNRIIT----NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
               + N   T    N N L+ +   NI   KTG+T  +G  +V      + P+  VVM 
Sbjct: 200 DMATFANPAYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMD 259

Query: 270 MPTSQERDQKALELITS 286
                     A  L T 
Sbjct: 260 AFGKYTHFADASRLRTW 276


>gi|19703412|ref|NP_602974.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19713482|gb|AAL94273.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 368

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 74/256 (28%), Positives = 121/256 (47%), Gaps = 12/256 (4%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++V+   K  +   K  +  YP AS+TKMM+L + F+ + + K+ LN  + +SK      
Sbjct: 115 AVVVGDTKGNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGKISLNDSVRISKNPLKYG 174

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQN 173
            S + LK    F  E  I A    SAN+ + A  E++  GS   F   M+ K K+ G+QN
Sbjct: 175 GSGIPLKAGQMFVLEDLIKASAVYSANNATYAIAEYVGNGSVFSFVAKMNKKLKEYGLQN 234

Query: 174 -TIYKNASGLHD-----KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIIT 225
              Y   +GL            TAR    L I   K + +Y +   I+  +  N    I 
Sbjct: 235 EIKYHTPAGLPTRVTKQPMDEGTARGIYKLSIEALK-YKKYIEIAGIKSTKIHNGKISIR 293

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N N L+ + + + GIKTG+ + + +NI  + +++   ++ VVMG  T + RD   L ++ 
Sbjct: 294 NRNHLIGE-NGVYGIKTGFHKEAKYNIAVASKFEGTDVIIVVMGGETYKTRDGIVLSVLD 352

Query: 286 SFLEKKTLKHQQTHRK 301
                 T+K+    RK
Sbjct: 353 ILNSNYTIKNGLIKRK 368


>gi|264677800|ref|YP_003277706.1| peptidase S11, D-alanyl-D-alanine [Comamonas testosteroni CNB-2]
 gi|262208312|gb|ACY32410.1| peptidase S11, D-alanyl-D-alanine [Comamonas testosteroni CNB-2]
          Length = 404

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 105/242 (43%), Gaps = 13/242 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + VID + +++   K D+   P ASLTK+MT  +I +     +L ++  I +++      
Sbjct: 155 AYVIDQDTHEVLLSKNDQAVLPIASLTKLMTGLLISQA----RLPMDEMITITQDDVDTE 210

Query: 115 P-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   L+  T  T  + +   +  S N  + A G    G   +F  LM++KA ++GM++
Sbjct: 211 KHSSSRLRVGTTLTRAEMMHLALMSSENRAAHALGRTYPGGLAQFVQLMNSKALQLGMKD 270

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T Y   +GL   NQ ++ARD A L  +   + P   +Y +   +      R     N N+
Sbjct: 271 TRYVEPTGLSSSNQ-SSARDLARLVAVAHAD-PLMREYSTSPGYEVAVGRRTLQFNNTNR 328

Query: 230 LLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           L+   +   G+ KTGY   +G  +V         ++ V +       R   A  +     
Sbjct: 329 LVKSDNWDIGLQKTGYISEAGRCLVMQAHVAGRKLIMVFLDSAGKFSRLADAERVRHWME 388

Query: 289 EK 290
            K
Sbjct: 389 SK 390


>gi|152987366|ref|YP_001349992.1| D-alanyl-D-alanine endopeptidase [Pseudomonas aeruginosa PA7]
 gi|150962524|gb|ABR84549.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa PA7]
          Length = 310

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 64/264 (24%), Positives = 115/264 (43%), Gaps = 26/264 (9%)

Query: 41  MISMASELHAK-------PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEY 92
            IS +    AK          S++V D N  ++   +  +   P AS+TK+MT  ++ + 
Sbjct: 20  AISASPPPKAKLPLQQELASGSALVTDQNSGKVLYSRNPDLVVPIASITKLMTAMVVLDS 79

Query: 93  LQSKKLHLNTQIPV--SKTAATQN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
               KL L+  +P+  S+T+  +   S++  +  +  +    +L  +  S N  + +  +
Sbjct: 80  ----KLPLDEVLPIAISETSEMRGVFSRV--RVGSQISRRDMLLLALMSSENRAAASLAQ 133

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
              G +  F   M+ KA  +GM+NT Y   +GL   N ++TARD   L ++  + +P   
Sbjct: 134 NYPGGKNAFVKAMNAKAHALGMKNTRYVEPTGLSLHN-VSTARDLTRL-LVASRQYPLLS 191

Query: 210 KYFSIRK----FRYRNRII--TNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           ++ +  +    FR+ N  +   N N L+ NK  NI   KTG+T  +G  +         P
Sbjct: 192 QWSTTPEKTVAFRHPNYTLGFRNTNHLINNKTWNIQLTKTGFTNEAGHCLAMRTTINRSP 251

Query: 263 IVAVVMGMPTSQERDQKALELITS 286
           +  VV+           A  L   
Sbjct: 252 VNLVVLDAFGKYTHFADATRLRRW 275


>gi|332530569|ref|ZP_08406506.1| murein-DD-endopeptidase [Hylemonella gracilis ATCC 19624]
 gi|332039975|gb|EGI76364.1| murein-DD-endopeptidase [Hylemonella gracilis ATCC 19624]
          Length = 346

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 13/234 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + VID +  ++   K +E   P ASLTK+MT  +I E     +L L+  I +++      
Sbjct: 95  AYVIDQDTQEVLFSKNEEAVLPIASLTKLMTTLLISEA----ELPLDEPITITQDDVDTE 150

Query: 115 P-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   L+  T  T  + +   +  S N  + A G    G    F  +M+ KA+ +GMQ+
Sbjct: 151 KYSVSRLRVGTVLTRGELLHLALMASENRAANALGRTYPGGLSIFVTMMNAKAQLLGMQD 210

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T Y   +GL  +NQ ++ARD A+L      + P   ++ + R ++     R  +  N N+
Sbjct: 211 TRYVEPTGLSSRNQ-SSARDLALLVDAASAD-PMLREFSTTRAYQVAVGQRKMVFANTNR 268

Query: 230 L-LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           L LN+  +I   KTGY   +G  +V         ++ V +       R   A  
Sbjct: 269 LVLNQRWDIGLQKTGYISEAGQCLVMQATVAGRKLIMVFLDSVGKLSRLGDAER 322


>gi|327462875|gb|EGF09197.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK1057]
          Length = 422

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 68/348 (19%), Positives = 140/348 (40%), Gaps = 47/348 (13%)

Query: 31  MGKILFLSIIMISMASELHAK-----PKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMM 84
           M ++    ++++ M +   A         S++ +D    ++   K    P    S+T ++
Sbjct: 1   MKRLFLCLLVLVGMTASKVAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLL 60

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALITRSA 140
           T+Y+++E +    L  +T + +S  A T     N S + L+ K  +  +  I A +  S+
Sbjct: 61  TVYLVYEAIDRGDLTADTYVDISDYAYTLTSNPNISNVPLEAK-RYKAKDLIAASLMSSS 119

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------------- 183
           N  + A  E + GSE+ F  +M  K K+ G+++    N++GL+                 
Sbjct: 120 NSATIALAEKVGGSEENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYSASA 179

Query: 184 -------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL----N 232
                  D     +A D A++   L  +FPQ     S    +     + N+N +L    N
Sbjct: 180 STSKKSKDTENKFSAYDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSN 239

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELIT--- 285
               +DG+K G +   G + V +       ++ VV+ +         R      L+    
Sbjct: 240 FRSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVLDVEQTDGDPYARFVATASLMNYVS 299

Query: 286 -SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
            +F +   +   +T+ K N +    K+  +     + ++  ++I  +A
Sbjct: 300 QNFTQTTIVAEGETYNKSNSTVIDGKQKTVPAVASKDFTIIERIANQA 347


>gi|228920088|ref|ZP_04083437.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839544|gb|EEM84836.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 407

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 68/284 (23%), Positives = 121/284 (42%), Gaps = 21/284 (7%)

Query: 59  IDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K      +PAS TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 34  IDAKTGDVLYDKNAYHRAFPASTTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 88

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ KAK++G +++ 
Sbjct: 89  YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSH 148

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  + ++        T    N +   
Sbjct: 149 FVTPNGLHDPNHYTTPYDMAMITKGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSNFF 207

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I++VVM     +  E  ++  E       
Sbjct: 208 EN-PYSIGGKTGFTNEARNTLVLLNEKDGNRIISVVMASQRPEIYEDLKQMAEYSFGQFT 266

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           K+ +      HQ+T   +   ++ L++S  +   K      K I
Sbjct: 267 KQMVLDKHNWHQKTTYLNKDVNSELEQSAELMLKKDEGKNVKTI 310


>gi|26248513|ref|NP_754553.1| D-alanyl-D-alanine endopeptidase [Escherichia coli CFT073]
 gi|227887189|ref|ZP_04004994.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 83972]
 gi|300978674|ref|ZP_07174364.1| beta-lactamase [Escherichia coli MS 45-1]
 gi|301048867|ref|ZP_07195861.1| beta-lactamase [Escherichia coli MS 185-1]
 gi|26108918|gb|AAN81121.1|AE016763_80 Penicillin-binding protein 7 precursor [Escherichia coli CFT073]
 gi|227835539|gb|EEJ46005.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 83972]
 gi|300299322|gb|EFJ55707.1| beta-lactamase [Escherichia coli MS 185-1]
 gi|300409606|gb|EFJ93144.1| beta-lactamase [Escherichia coli MS 45-1]
 gi|307554203|gb|ADN46978.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli ABU 83972]
 gi|315294501|gb|EFU53849.1| beta-lactamase [Escherichia coli MS 153-1]
          Length = 313

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 107/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAA 111
           S++++D+N N++      +  R  AS++K+MT  ++ +     +L L+ +  + +S+T  
Sbjct: 45  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDA----RLPLDEKLKVDISQTP- 99

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +      G  K F   M+ KAK +GM
Sbjct: 100 EMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGM 159

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIIT---- 225
            NT +   +GL   N ++TARD   L ++  K +P   +  + R+    + N   T    
Sbjct: 160 NNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFR 217

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +       + P+  VVM           A  L 
Sbjct: 218 NTNHLVYRDNWNIQLTKTGFTNAAGHCLAMRTVINNKPVALVVMDAFGKYTHFADASRLR 277

Query: 285 TS 286
           T 
Sbjct: 278 TW 279


>gi|299531620|ref|ZP_07045025.1| D-alanyl-D-alanine endopeptidase [Comamonas testosteroni S44]
 gi|298720336|gb|EFI61288.1| D-alanyl-D-alanine endopeptidase [Comamonas testosteroni S44]
          Length = 404

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 105/242 (43%), Gaps = 13/242 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + VID + +++   K D+   P ASLTK+MT  +I +     +L ++  I +++      
Sbjct: 155 AYVIDQDTHEVLLSKNDQAVLPIASLTKLMTGLLISQA----RLPMDEMITITQDDVDTE 210

Query: 115 P-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   L+  T  T  + +   +  S N  + A G    G   +F  LM++KA ++GM++
Sbjct: 211 KHSSSRLRVGTTLTRAEMMHLALMSSENRAAHALGRTYPGGLAQFVQLMNSKALQLGMKD 270

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T Y   +GL   NQ ++ARD A L  +   + P   +Y +   +      R     N N+
Sbjct: 271 TRYVEPTGLSSSNQ-SSARDLARLVAVAHAD-PLMREYSTSPGYEVAVGRRTLQFNNTNR 328

Query: 230 LLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           L+   +   G+ KTGY   +G  +V         ++ V +       R   A  +     
Sbjct: 329 LVKSDNWDIGLQKTGYISEAGRCLVMQAHVAGRKLIMVFLDSAGKFSRLADAERVRHWME 388

Query: 289 EK 290
            K
Sbjct: 389 SK 390


>gi|296328746|ref|ZP_06871260.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|296154081|gb|EFG94885.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 423

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 74/256 (28%), Positives = 121/256 (47%), Gaps = 12/256 (4%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++V+   K  +   K  +  YP AS+TKMM+L + F+ + + K+ LN  + +SK      
Sbjct: 170 AVVVGDTKGNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGKISLNDSVRISKNPLKYG 229

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQN 173
            S + LK    F  E  I A    SAN+ + A  E++  GS   F   M+ K K+ G+QN
Sbjct: 230 GSGIPLKAGQMFVLEDLIKASAVYSANNATYAIAEYVGNGSVFSFVAKMNKKLKEYGLQN 289

Query: 174 -TIYKNASGLHD-----KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIIT 225
              Y   +GL            TAR    L I   K + +Y +   I+  +  N    I 
Sbjct: 290 EIKYHTPAGLPTRVTKQPMDEGTARGIYKLSIEALK-YKKYIEIAGIKSTKIHNGKISIR 348

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N N L+ + + + GIKTG+ + + +NI  + +++   ++ VVMG  T + RD   L ++ 
Sbjct: 349 NRNHLIGE-NGVYGIKTGFHKEAKYNIAVASKFEGIDVIIVVMGGETYKTRDGIVLSVLD 407

Query: 286 SFLEKKTLKHQQTHRK 301
                 T+K+    RK
Sbjct: 408 ILNSNYTIKNGLIKRK 423


>gi|294340887|emb|CAZ89282.1| putative Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
           [Thiomonas sp. 3As]
          Length = 457

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 101/243 (41%), Gaps = 13/243 (5%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D   +++   K  D  R  ASLTK+MT  +I +  Q     ++  I ++      
Sbjct: 179 SALVVDEGTDRVLLSKNADTARPIASLTKLMTAAVILDAHQP----MDQVIEITDADIDT 234

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S   L+  T  T E+ +   +  S N  + A      G    F   M+ KA+ +GM 
Sbjct: 235 LKWSSSRLRPGTKLTREELLKLALMSSENRAAHALARNYPGGLAAFIPAMNAKARSLGMN 294

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRII--TNHN 228
            T Y   +GL      +TA D A+L      ++P   ++ +    +     R +   N +
Sbjct: 295 TTRYVEPTGLS-PQNESTAHDLALLVKAA-YHYPLIREFSTHPESEVEVGPRTLQFRNTD 352

Query: 229 KLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
            L+ N+  +I   KTGY   +G  +V   +++   ++ V++           A  + T  
Sbjct: 353 HLVFNRGWDILLQKTGYINEAGHCLVLQTKFEGRRVIVVLLDAWGKYSHFGDAQRIRTWL 412

Query: 288 LEK 290
             K
Sbjct: 413 EAK 415


>gi|126640330|ref|YP_001083314.1| D-alanyl-D-alanine endopeptidase penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter baumannii
           ATCC 17978]
          Length = 255

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 111/253 (43%), Gaps = 18/253 (7%)

Query: 49  HAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +A+P  S+   +V+D    ++   K  +     AS+TK+MT  +  +     +L+++ +I
Sbjct: 4   NAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKLMTAVVTADA----RLNMSEEI 59

Query: 105 PVSKTAATQNP---SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
            + +          S   L+        + +L  + +S N  + A      G    F   
Sbjct: 60  TLEQIDFAGAGGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAA 119

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR- 220
           M+ KA+ +GM  T Y  ++GL D   +++ARD  IL     + +    ++ +   + +  
Sbjct: 120 MNAKARALGMNATHYYESTGL-DPRNVSSARDLGILASTASQ-YGLIRQFSTTPTYDFNL 177

Query: 221 -NRII--TNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
             R++   N N L+ N   NI+  KTGY   +G  +V        P V V++G P++Q R
Sbjct: 178 GYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEPSTQAR 237

Query: 277 DQKALELITSFLE 289
           +  A  L+     
Sbjct: 238 NNDATNLLGWLSN 250


>gi|257437711|ref|ZP_05613466.1| putative D-alanyl-D-alanine carboxypeptidase [Faecalibacterium
           prausnitzii A2-165]
 gi|257200018|gb|EEU98302.1| putative D-alanyl-D-alanine carboxypeptidase [Faecalibacterium
           prausnitzii A2-165]
          Length = 429

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 63/265 (23%), Positives = 108/265 (40%), Gaps = 25/265 (9%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKL------HLNTQIPVSKTAATQNPSKLY 119
           +     D+ RY ASLTKMMT  +  E  +           L  +    + A   N S + 
Sbjct: 55  ILEQNADQQRYIASLTKMMTALLFLESGKDMNAEITIPASLTQEFKDIQNA---NGSTIN 111

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKN 178
           L+          +  L+  SAND ++A    +S G    F   M+ +AK++G  +T +  
Sbjct: 112 LRIGETVRRIDLLYGLLVASANDAASAIASDVSDGDLTAFVARMNQRAKELGCTSTSFTC 171

Query: 179 ASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR-------YRNRIITNHNKLL 231
             GL+D   +++A D A++     +N   Y +  +   +           R IT+ N +L
Sbjct: 172 VHGLYDYGNVSSAHDLALIAKACAEN-ETYMQVANTLSYTLPATNLHQNERTITSTNLML 230

Query: 232 NKM-----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           N         I G+KTG+T  +G   VT  +        VV+G        ++A E++  
Sbjct: 231 NPEYPYYRDYIRGMKTGFTTLAGRCYVTFAQKDGHTYGLVVLGSDLDNI-YREASEILDW 289

Query: 287 FLEKKTLKHQQTHRKDNLSSTSLKK 311
                +   +    +  L++  LKK
Sbjct: 290 AFASFS-DRELVDTETPLTTAPLKK 313


>gi|153948552|ref|YP_001401770.1| D-alanyl-D-alanine endopeptidase [Yersinia pseudotuberculosis IP
           31758]
 gi|152960047|gb|ABS47508.1| penicillin-binding protein 7 [Yersinia pseudotuberculosis IP 31758]
          Length = 311

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 102/241 (42%), Gaps = 15/241 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N++      +   P AS+TK+MT  ++ +     KL L+  + V      +
Sbjct: 46  SAMVVDLQTNKVIYANNADKVVPIASITKLMTAMVVLDA----KLPLDEILSVDIDQTKE 101

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  ++  +  + +  +L  +  S N  + +      G    F   M+ KAK +GM 
Sbjct: 102 LKGVFSRVRVNSEISRKDMLLLTLMSSENRAAASLAHHYPGGYNAFIKAMNAKAKSLGMS 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT--N 226
           +T Y   +GL   N ++TARD A L ++  K +P   +  +  +    FR  N  +   N
Sbjct: 162 STHYVEPTGLSI-NNVSTARDLAKL-LMATKQYPLIGQLSTTTEKMATFREPNYTLPFRN 219

Query: 227 HNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+     NI   KTG+T  +G  +V        P+  VV+           A  L +
Sbjct: 220 TNHLVYNDKWNIQLTKTGFTNQAGHCLVMRTVIGKRPVALVVLDAFGKYTHFADANRLRS 279

Query: 286 S 286
            
Sbjct: 280 W 280


>gi|22126890|ref|NP_670313.1| D-alanyl-D-alanine endopeptidase [Yersinia pestis KIM 10]
 gi|45440799|ref|NP_992338.1| D-alanyl-D-alanine endopeptidase [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51595561|ref|YP_069752.1| D-alanyl-D-alanine endopeptidase [Yersinia pseudotuberculosis IP
           32953]
 gi|149366829|ref|ZP_01888863.1| penicillin-binding protein 7 precursor [Yersinia pestis CA88-4125]
 gi|162100180|ref|YP_650800.2| D-alanyl-D-alanine endopeptidase [Yersinia pestis Antiqua]
 gi|162139430|ref|YP_648728.2| D-alanyl-D-alanine endopeptidase [Yersinia pestis Nepal516]
 gi|162418831|ref|YP_001605881.1| D-alanyl-D-alanine endopeptidase [Yersinia pestis Angola]
 gi|165924784|ref|ZP_02220616.1| penicillin-binding protein 7 [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165938339|ref|ZP_02226897.1| penicillin-binding protein 7 [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166009970|ref|ZP_02230868.1| penicillin-binding protein 7 [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211300|ref|ZP_02237335.1| penicillin-binding protein 7 [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400360|ref|ZP_02305873.1| penicillin-binding protein 7 [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419589|ref|ZP_02311342.1| penicillin-binding protein 7 [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167423973|ref|ZP_02315726.1| penicillin-binding protein 7 [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167466748|ref|ZP_02331452.1| penicillin-binding protein 7 [Yersinia pestis FV-1]
 gi|218928339|ref|YP_002346214.1| D-alanyl-D-alanine endopeptidase [Yersinia pestis CO92]
 gi|229841118|ref|ZP_04461277.1| Murein-DD-endopeptidase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229843222|ref|ZP_04463368.1| Murein-DD-endopeptidase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229894160|ref|ZP_04509346.1| Murein-DD-endopeptidase [Yersinia pestis Pestoides A]
 gi|229903394|ref|ZP_04518507.1| Murein-DD-endopeptidase [Yersinia pestis Nepal516]
 gi|270487204|ref|ZP_06204278.1| D-alanyl-D-alanine endopeptidase [Yersinia pestis KIM D27]
 gi|294503194|ref|YP_003567256.1| penicillin-binding protein 7 precursor [Yersinia pestis Z176003]
 gi|21959926|gb|AAM86564.1|AE013903_1 penicillin-binding protein 7 [Yersinia pestis KIM 10]
 gi|45435657|gb|AAS61215.1| penicillin-binding protein 7 precursor [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51588843|emb|CAH20457.1| penicillin-binding protein 7 precursor [Yersinia pseudotuberculosis
           IP 32953]
 gi|115346950|emb|CAL19840.1| penicillin-binding protein 7 precursor [Yersinia pestis CO92]
 gi|149291203|gb|EDM41278.1| penicillin-binding protein 7 precursor [Yersinia pestis CA88-4125]
 gi|162351646|gb|ABX85594.1| penicillin-binding protein 7 [Yersinia pestis Angola]
 gi|165913717|gb|EDR32336.1| penicillin-binding protein 7 [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165923844|gb|EDR40976.1| penicillin-binding protein 7 [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165991366|gb|EDR43667.1| penicillin-binding protein 7 [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207071|gb|EDR51551.1| penicillin-binding protein 7 [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962330|gb|EDR58351.1| penicillin-binding protein 7 [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167050309|gb|EDR61717.1| penicillin-binding protein 7 [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056822|gb|EDR66585.1| penicillin-binding protein 7 [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|229679164|gb|EEO75267.1| Murein-DD-endopeptidase [Yersinia pestis Nepal516]
 gi|229689569|gb|EEO81630.1| Murein-DD-endopeptidase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229697484|gb|EEO87531.1| Murein-DD-endopeptidase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229704045|gb|EEO91058.1| Murein-DD-endopeptidase [Yersinia pestis Pestoides A]
 gi|262361233|gb|ACY57954.1| penicillin-binding protein 7 precursor [Yersinia pestis D106004]
 gi|262365230|gb|ACY61787.1| penicillin-binding protein 7 precursor [Yersinia pestis D182038]
 gi|270335708|gb|EFA46485.1| D-alanyl-D-alanine endopeptidase [Yersinia pestis KIM D27]
 gi|294353653|gb|ADE63994.1| penicillin-binding protein 7 precursor [Yersinia pestis Z176003]
 gi|320015987|gb|ADV99558.1| Murein-DD-endopeptidase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 311

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 102/241 (42%), Gaps = 15/241 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N++      +   P AS+TK+MT  ++ +     KL L+  + V      +
Sbjct: 46  SAMVVDLQTNKVIYANNADKVVPIASITKLMTAMVVLDA----KLPLDEILSVDIDQTKE 101

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  ++  +  + +  +L  +  S N  + +      G    F   M+ KAK +GM 
Sbjct: 102 LKGVFSRVRVNSEISRKDMLLLTLMSSENRAAASLAHHYPGGYNAFIKAMNAKAKSLGMN 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT--N 226
           +T Y   +GL   N ++TARD A L ++  K +P   +  +  +    FR  N  +   N
Sbjct: 162 STHYVEPTGLSI-NNVSTARDLAKL-LMATKQYPLIGQLSTTTEKMATFREPNYTLPFRN 219

Query: 227 HNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+     NI   KTG+T  +G  +V        P+  VV+           A  L +
Sbjct: 220 TNHLVYNDKWNIQLTKTGFTNQAGHCLVMRTVIGKRPVALVVLDAFGKYTHFADANRLRS 279

Query: 286 S 286
            
Sbjct: 280 W 280


>gi|271500976|ref|YP_003334001.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Dickeya
           dadantii Ech586]
 gi|270344531|gb|ACZ77296.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Dickeya
           dadantii Ech586]
          Length = 319

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/269 (21%), Positives = 106/269 (39%), Gaps = 20/269 (7%)

Query: 32  GKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMT 85
             + F +  +       HA  +      S++V+D+  N++      +   P AS+TK+MT
Sbjct: 17  APVCFAAQAVAKTPVTQHAPSRQEIASGSAMVVDMRNNEVLYSSNPDVVVPIASVTKLMT 76

Query: 86  LYIIFEYLQSKKLHLNTQIPVS-KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
             ++ +  Q     L+  I V              ++  +  +    +L  +  S N  +
Sbjct: 77  AMVVLDANQP----LDELISVDISHTKEMQGVYSRVRLGSEISRHDMLLLALMSSENRAA 132

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            +      G  + F   M+ KA+ +GM +T Y   +GL   N ++TARD   L ++  K 
Sbjct: 133 ASLAHHYRGGYQAFITAMNAKARSLGMMHTYYVEPTGLSTSN-VSTARDLTKL-LIASKQ 190

Query: 205 FPQYYKYFSIRK----FRYRNRIIT--NHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLR 257
           +P   +  +  +    F + +  +   N N L+ +   NI   KTG+T  +G  +V    
Sbjct: 191 YPLLSQLSTTHEKTAVFTHPSYTLPFRNTNHLIYRPDWNIQLTKTGFTNQAGHCLVMRTV 250

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITS 286
               P+  VV+           A  L   
Sbjct: 251 IGGRPVSLVVLDAFGKFTHFADANRLRNW 279


>gi|161524312|ref|YP_001579324.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           multivorans ATCC 17616]
 gi|189350932|ref|YP_001946560.1| D-alanyl-D-alanine endopeptidase [Burkholderia multivorans ATCC
           17616]
 gi|221214784|ref|ZP_03587753.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           multivorans CGD1]
 gi|160341741|gb|ABX14827.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           multivorans ATCC 17616]
 gi|189334954|dbj|BAG44024.1| D-alanyl-D-alanine endopeptidase [Burkholderia multivorans ATCC
           17616]
 gi|221165323|gb|EED97800.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           multivorans CGD1]
          Length = 381

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 101/249 (40%), Gaps = 14/249 (5%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            +  A     + V+D N  +    K      P AS++K+MT  ++ +     K  +  QI
Sbjct: 120 PDALALRSSVAYVVDQNTGEPLFDKNSHAVVPIASISKLMTAMVVLDS----KAPMTEQI 175

Query: 105 PVSKTAATQN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            V+         +   L   +  + E  +   +  S N  + A   +  G    F   M+
Sbjct: 176 EVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMN 235

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY---- 219
            KAK +GM +T ++N++GL   N +++ARD   +     + +P   K+ + R +      
Sbjct: 236 AKAKALGMTDTHFENSTGLSSSN-VSSARDLVKMVNAAYQ-YPLIRKFSTDRTYEVYTGK 293

Query: 220 RNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           RN +  + N L+  N   +I   KTG+   +G  +V        P+V V++       R 
Sbjct: 294 RNLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGRPVVMVLLDSFGKYSRF 353

Query: 278 QKALELITS 286
             A  L   
Sbjct: 354 ADASRLRNW 362


>gi|228477390|ref|ZP_04062026.1| D-Alanyl-D-Alanine carboxypeptidase [Streptococcus salivarius
           SK126]
 gi|228250825|gb|EEK10013.1| D-Alanyl-D-Alanine carboxypeptidase [Streptococcus salivarius
           SK126]
          Length = 446

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 81/360 (22%), Positives = 148/360 (41%), Gaps = 59/360 (16%)

Query: 29  QLMGKILFLSIIMISMASELHA-----------------KPKYSSIVIDVNKNQMTGFKQ 71
           +L+G  L  S+ +    S                     +PK SS++ID N   +     
Sbjct: 4   KLLGLFLVASLALAPSLSSADQLVDIAQKAGYKEATETYRPK-SSLLIDANTGDILWQDN 62

Query: 72  -DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYF 126
            DE R PAS++K M+LY++F+ L   ++  +T I    T    A     S   +     +
Sbjct: 63  IDEVRDPASMSKAMSLYLVFDALSKGEIKEDTVITAKPTDEAIANIYEISNNKIVSGVKY 122

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGL--- 182
           T  + I      S+N  +     ++S ++  K+   M+ K+K++GM NT + NASG    
Sbjct: 123 TVSELITMTAVPSSNAATVMLANYLSDNDPDKWIDRMNEKSKELGMTNTKWYNASGAGAA 182

Query: 183 ----------HDKNQI--TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----IIT 225
                     +D N    TTARD +I+   L K+ P+  KY S +    +          
Sbjct: 183 SYKGYYTPKRYDNNHSNQTTARDLSIMAYNLIKHHPEILKYTSQQTVTVKKGTPYEETFE 242

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           N+N  L      +  +DG+KTG +    +N +++ +  +  +++V++G+   ++   + +
Sbjct: 243 NYNYSLPGADYGLKGVDGLKTGSSPRGDYNYISTCKRGNQRVISVILGVGNWEDESSEKI 302

Query: 282 E------LITSFLEKKTLKHQQTHRKDNLSST--SLKKSLMIKKLKRTYSQFKKIDAKAH 333
                  LI    +  + K   +  K  +      ++K +     K    Q  KI  K  
Sbjct: 303 RHAFGNSLIEKMFKDYSYKKVLSKGKQKIDGKKYDVQKDVYATVKKG---QEPKISVKND 359


>gi|294637382|ref|ZP_06715676.1| penicillin-binding protein 7 [Edwardsiella tarda ATCC 23685]
 gi|291089460|gb|EFE22021.1| penicillin-binding protein 7 [Edwardsiella tarda ATCC 23685]
          Length = 309

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/251 (22%), Positives = 92/251 (36%), Gaps = 15/251 (5%)

Query: 50  AKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS- 107
           A    S++V+D+N +Q+      D     AS+TK+MT  +  +        LN  I V  
Sbjct: 41  ALASGSAMVMDLNTHQVIYASHPDVQVPIASITKLMTAMVALDAHPD----LNEVIAVDI 96

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
           +           ++  +  T  + +L  +  S N  +        G    F   M+ KA+
Sbjct: 97  RHTKELKGVFSRVRVGSEQTRREMLLLALMSSENRAAATLAHHYPGGYDAFIRAMNAKAR 156

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNR- 222
            +GM  T Y   +GL     +++ARD   L     K +P   +  +       FR+    
Sbjct: 157 ALGMTRTHYVEPTGLS-PLNVSSARDLVKLLQAT-KRYPLISELSTTETQSVTFRHPTYT 214

Query: 223 -IITNHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
               N N LL     +I   KTG+T  +G  +         P+  VV+           A
Sbjct: 215 ETFNNTNHLLRNDKWDIALTKTGFTNQAGHCLAMRTVIGGRPVALVVLDAFGKYTHFADA 274

Query: 281 LELITSFLEKK 291
             L    L  K
Sbjct: 275 NRLREWMLTGK 285


>gi|269836468|ref|YP_003318696.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785731|gb|ACZ37874.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 386

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 101/262 (38%), Gaps = 24/262 (9%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           ++    + A    + + +D+           D P  PAS TKM+T  I+ ++       L
Sbjct: 38  LAAPVPVPAITARAVLAVDLVTGATLAAVNPDMPYPPASTTKMLTALIVRQHAA-----L 92

Query: 101 NTQIPV--SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS------ 152
           +  I +           + + L+          +  L+  S  D + A    +       
Sbjct: 93  DEVITIEPGDLVDEVIYAHVGLRAGDRVAVRDLLAGLLVPSGGDAARALARVVGARLDPA 152

Query: 153 --GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN------ 204
                  F   M+  A+++GM++T + N  G     Q +TARD AILG  L K+      
Sbjct: 153 ATNPRAAFVAEMNRVARRLGMRSTHFVNPDGRDAPGQRSTARDLAILGAALLKDPFLADV 212

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
             Q     S++    R+  + + N LL ++  + GIKTG T   G N+V      D  ++
Sbjct: 213 VAQPVTTISVKGPNARDITLWSTNHLLGEL-GVHGIKTGTTAEDGENLVAVAWRGDHQVI 271

Query: 265 AVVMGMPTSQERDQKALELITS 286
            V +G     ER      L  +
Sbjct: 272 TVTLGSA-EGERFNDVRALFDA 292


>gi|332366179|gb|EGJ43934.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK355]
          Length = 422

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 66/348 (18%), Positives = 140/348 (40%), Gaps = 47/348 (13%)

Query: 31  MGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQDE-PRYPASLTKMM 84
           M ++    ++++ + +   A   Y     S++ +D    ++   K    P    S+T ++
Sbjct: 1   MKRLFLCFLVLVGLTASKVAADDYNIAAKSAMAVDATSGKILYEKDATTPIEVGSITNLL 60

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           T+Y+++E +    L  +T + +S  A    A  N S + L+ +  +  +  I A +  SA
Sbjct: 61  TVYLVYEAIDRGDLTADTYVDISDYAYNLTANPNISNVPLEAR-RYKVKDLIAASLMSSA 119

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------------- 183
           N  + A  E + GSE+ F  +M  K K+ G+ +    N++GL+                 
Sbjct: 120 NSATIALAEKVGGSEENFVQMMKAKLKEWGITDATVVNSTGLNTLLLEYASEETDYTASA 179

Query: 184 -------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL----N 232
                  D     +A D A++   L  +FPQ  +  S    +     + N+N +L    N
Sbjct: 180 STSKKNKDSENKFSAYDLAVISRHLIMDFPQVTEITSKSTAKIAGTSLENYNFMLENQSN 239

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELIT--- 285
               +DG+K G +   G + V +       ++ VV+ +         R      L+    
Sbjct: 240 FRSGVDGLKAGSSEKGGSSFVATTTENGIRMITVVLDVEQTDGDPYARFVATASLMNYVS 299

Query: 286 -SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
            +F +   +   + + K + +    K+  +     + ++  ++I  +A
Sbjct: 300 QNFTQTTIVAEGEAYNKSHSTVIDGKQKTVPAVASKDFTIIERIANQA 347


>gi|229016624|ref|ZP_04173563.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273]
 gi|229022835|ref|ZP_04179357.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272]
 gi|228738470|gb|EEL88944.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272]
 gi|228744711|gb|EEL94774.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273]
          Length = 407

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 70/284 (24%), Positives = 120/284 (42%), Gaps = 21/284 (7%)

Query: 59  IDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 34  IDAKTGDVLYDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 88

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ KAK++G +++ 
Sbjct: 89  YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSH 148

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS----IRKFRYRNRIITNHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  +          +   I N +   
Sbjct: 149 FVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSTQTVSIFNKSTYF 207

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I+ VVM     +  E  ++  E       
Sbjct: 208 EN-PYSMGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMAEYSFGQFT 266

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           K+T+      HQ+T   +    + L+KS  +   K      K  
Sbjct: 267 KQTVLDKHSWHQKTTYLNKDVDSELEKSAELMLKKDEGKNVKTA 310


>gi|311278881|ref|YP_003941112.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Enterobacter
           cloacae SCF1]
 gi|308748076|gb|ADO47828.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Enterobacter
           cloacae SCF1]
          Length = 314

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 64/266 (24%), Positives = 112/266 (42%), Gaps = 29/266 (10%)

Query: 43  SMASELHAKPKY------------SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYII 89
             A +  AKP              S++++D+N NQ+      +  R  AS+TK+MT  ++
Sbjct: 18  PFAPQAIAKPAATTTASKPDIASGSAMIVDLNTNQVIYASDPDLVRPMASITKLMTAMVV 77

Query: 90  FEYLQSKKLHLNT--QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
            +      L L+   ++ +S+T          ++  +  + +  +L  +  S N  + + 
Sbjct: 78  LDAH----LPLDEMLKVDISQTP-EMKGVYSRVRLNSEISRKNMLLLALMSSENRAAASL 132

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
                G    F   M+ KAK +GM +T Y   +GL   N ++TARD   L ++  K +P 
Sbjct: 133 AHHYPGGYDAFIRAMNAKAKALGMTHTRYVEPTGLSIHN-VSTARDLTKL-LIATKQYPL 190

Query: 208 YYKYFSIRK--FRYRNRIIT----NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKD 260
             +  + ++    +RN   T    N N L+ +   NI   KTG+T  +G  +V      +
Sbjct: 191 IGQLSTTKEDTATFRNPAYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVMNN 250

Query: 261 DPIVAVVMGMPTSQERDQKALELITS 286
            P+  VVM           A  L T 
Sbjct: 251 RPVAMVVMDAFGKYTHFADASRLRTW 276


>gi|154504396|ref|ZP_02041134.1| hypothetical protein RUMGNA_01900 [Ruminococcus gnavus ATCC 29149]
 gi|153795325|gb|EDN77745.1| hypothetical protein RUMGNA_01900 [Ruminococcus gnavus ATCC 29149]
          Length = 345

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 104/253 (41%), Gaps = 25/253 (9%)

Query: 58  VIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT--QN 114
           + DV    +    Q  EP YPAS TK+MT Y+  +Y      +L+  + VS+ A    ++
Sbjct: 99  LFDVQGKNVLYADQIFEPLYPASTTKIMTAYVALKYG-----NLDDIVTVSERATDFAED 153

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
                L+     +    +  L+  S ND + A  E +SGS + F   M+ +A+ +G   T
Sbjct: 154 EQVCGLQAGDQLSLRDLLNGLLLYSGNDCAVAIAEHVSGSVEAFVDKMNEEARNLGATGT 213

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR---------NRIIT 225
            + N  GL +++  TTA D  ++     +N PQ+ +  S   +                 
Sbjct: 214 HFVNPHGLQNEDHYTTAYDLYLMFNACLQN-PQFVEMISQTSYTANLTSASGVPYTMTWE 272

Query: 226 NHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVMGMPTSQERDQ 278
             N   +          + G KTG T  +G  +V   +  +  P +++VMG         
Sbjct: 273 PTNYYASGDAAAPEGVKVIGGKTGTTDEAGSCLVLYEQDQQGRPYISIVMGASQKSILYD 332

Query: 279 KALELITSFLEKK 291
               L++S +  K
Sbjct: 333 NMTRLMSSGINGK 345


>gi|325265477|ref|ZP_08132200.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
 gi|324029335|gb|EGB90627.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
          Length = 476

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 65/277 (23%), Positives = 126/277 (45%), Gaps = 31/277 (11%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S++V+D+    +   K  D   +PAS+TK++T  +  E        L  ++  ++ + + 
Sbjct: 89  SAVVMDMESGAILYGKNMDAKHFPASITKLLTTLVALENAD-----LTDKVKFTEDSISF 143

Query: 113 --QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE-----FISGSEKKFAILMSNK 165
              + +++ +K     + E  + A++  SAN+VS A  E      + G+   F   M+++
Sbjct: 144 LQYDDAQIGMKVGEELSLEDSLHAVLLASANEVSHAVAESVGELRLGGNYDTFIQKMNDR 203

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAIL--GILLRKNFPQY-----YKYFSIRKFR 218
           AK++G  N+ + N +GLHD    TTA D A++   +  ++ F        YK  +     
Sbjct: 204 AKELGCTNSHWVNPNGLHDDEHYTTAHDMALIASAVYQQEEFRTIMGKLEYKIGAT-NLT 262

Query: 219 YRNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM---GM 270
              R+   ++K+L            G KTGYT  +   +VT     D  + AVV+   G+
Sbjct: 263 QEERVFQQNHKMLWPENYYYYEYCTGGKTGYTDQAKTTLVTMADNGDMHLAAVVLYDYGV 322

Query: 271 PTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSST 307
               +  +  ++ + S  +K  +K+ +T    N  +T
Sbjct: 323 DAYTD-TRAMMDYVFSNFKKVPVKNLETSEDINNFNT 358


>gi|320176628|gb|EFW51670.1| Murein-DD-endopeptidase [Shigella dysenteriae CDC 74-1112]
          Length = 297

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 107/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAA 111
           S +++D+N N++      +  R  AS++K+MT  ++ +     +L L+ +  + +S+T  
Sbjct: 29  SVMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDA----RLPLDEKLKVDISQTP- 83

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +      G  K F   M+ KAK +GM
Sbjct: 84  EMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGM 143

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIIT---- 225
            NT +   +GL   N ++TARD   L ++  K +P   +  + R+    + N   T    
Sbjct: 144 NNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFR 201

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L 
Sbjct: 202 NTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLR 261

Query: 285 TS 286
           T 
Sbjct: 262 TW 263


>gi|170025107|ref|YP_001721612.1| D-alanyl-D-alanine endopeptidase [Yersinia pseudotuberculosis
           YPIII]
 gi|169751641|gb|ACA69159.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Yersinia
           pseudotuberculosis YPIII]
          Length = 323

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 102/241 (42%), Gaps = 15/241 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N++      +   P AS+TK+MT  ++ +     KL L+  + V      +
Sbjct: 58  SAMVVDLQTNKVIYANNADKVVPIASITKLMTAMVVLDA----KLPLDEILSVDIDQTKE 113

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  ++  +  + +  +L  +  S N  + +      G    F   M+ KAK +GM 
Sbjct: 114 LKGVFSRVRVNSEISRKDMLLLTLMSSENRAAASLAHHYPGGYNAFIKAMNAKAKSLGMS 173

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT--N 226
           +T Y   +GL   N ++TARD A L ++  K +P   +  +  +    FR  N  +   N
Sbjct: 174 STHYVEPTGLSI-NNVSTARDLAKL-LMATKQYPLIGQLSTTTEKMATFREPNYTLPFRN 231

Query: 227 HNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+     NI   KTG+T  +G  +V        P+  VV+           A  L +
Sbjct: 232 TNHLVYNDKWNIQLTKTGFTNQAGHCLVMRTVIGKRPVALVVLDAFGKYTHFADANRLRS 291

Query: 286 S 286
            
Sbjct: 292 W 292


>gi|283779427|ref|YP_003370182.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pirellula
           staleyi DSM 6068]
 gi|283437880|gb|ADB16322.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pirellula
           staleyi DSM 6068]
          Length = 677

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/257 (24%), Positives = 105/257 (40%), Gaps = 22/257 (8%)

Query: 55  SSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S  + D     +   +++D+    AS TK+MT  ++          L+  + +S  A   
Sbjct: 409 SWGIADAKTGAIIASYEEDDKLDIASTTKLMTALVVARMAGENASLLDEVVTISAAADAT 468

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE----------KKFAILMS 163
             S  +++E       + +  L+  S ND S A  E I               +F   M+
Sbjct: 469 PGSSAWIREGEKLQLRELLYGLLLPSGNDASVAVAEHIGSKLMLDDRKPAPLDRFIAEMN 528

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS--IRKFRY-- 219
             A ++GM +T YKN  GL ++   ++ RDQ  L   +    P    YF   IR  R   
Sbjct: 529 KVAAELGMSDTSYKNPHGLTEEGHFSSVRDQLKLARTIVGT-PMLAPYFEARIRGARIES 587

Query: 220 -----RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                RN    N N+LL+      G+KTG T  +G  +V+  +  +  +V VV+G  +S 
Sbjct: 588 EMGYQRNVAWKNSNRLLD-YEGYRGLKTGTTDAAGACLVSHFQQGEVDLVCVVLGSTSSD 646

Query: 275 ERDQKALELITSFLEKK 291
            R      L+    + +
Sbjct: 647 GRYVDTRNLLRWAAKHR 663



 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 10/110 (9%)

Query: 69  FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL---YLKEKTY 125
           ++  +P   ASL K+  +   +    + KL L   I +++       S +   +      
Sbjct: 57  YRAADPMPTASLIKLPVMIEAYRQSAAGKLDLAQSITLTEKD-KVPGSGVLTKHFSAGAT 115

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
            T    I  ++  S N  +          E+     ++   +K+ +  T 
Sbjct: 116 LTLRDAIRLMMAFSDNTATNMV------LERTGIPAVNQTMEKLDLVETK 159


>gi|271962810|ref|YP_003337006.1| D-alanyl-D-alanine carboxypeptidase [Streptosporangium roseum DSM
           43021]
 gi|270505985|gb|ACZ84263.1| D-alanyl-D-alanine carboxypeptidase [Streptosporangium roseum DSM
           43021]
          Length = 369

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/255 (23%), Positives = 107/255 (41%), Gaps = 17/255 (6%)

Query: 45  ASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHL 100
            + + A PK ++   +V D    ++   K    RY PAS  K +T   +       KL  
Sbjct: 43  PAGVKAPPKTAAKSYVVADAETGEVLAAKDPHGRYLPASTLKALTALTLI-----PKLDK 97

Query: 101 NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
           + ++  S  A  +  S + L  K  +T +    AL+  S ND + A  E   G  K    
Sbjct: 98  DLKVKPSSRAVNEEGSAVGLVSKPIYTVDDLFKALMLVSGNDCAMALAEANGGLAKT-LR 156

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY- 219
            M+ +A+++   +T+ K  SGL    Q ++A D A++      N   + +Y S +  ++ 
Sbjct: 157 DMNTEAQRLQAFDTVAKTPSGLDKPGQSSSAYDLALIARAGLAN-DDFQRYISTKVDKFP 215

Query: 220 ---RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
                  I NHNKLL +   + G+K G+T  +  + V + R     I+  VM        
Sbjct: 216 APKGYYEIGNHNKLLWRYKGMIGVKNGWTSKALGSFVGAARRNGHTIIVSVM--RHEGYF 273

Query: 277 DQKALELITSFLEKK 291
             +  +L+      +
Sbjct: 274 WDEVADLLDWGFATR 288


>gi|294781926|ref|ZP_06747258.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp.
           1_1_41FAA]
 gi|294481737|gb|EFG29506.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp.
           1_1_41FAA]
          Length = 435

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 74/257 (28%), Positives = 126/257 (49%), Gaps = 14/257 (5%)

Query: 56  SIVI-DVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++++ D+N   +   K  +  YP AS+TK+M+L + F+ + +  + L+  + +SKT    
Sbjct: 182 AVLVGDLN-GNVIFSKNADTMYPLASVTKVMSLLVTFDEINAGNIGLHDSVRISKTPLKY 240

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQ 172
             S + LKE   F  E  I A    SAN+ + A  E++  GS   F   M+ K K++G+Q
Sbjct: 241 GGSGIALKEGQIFILEDLIKASAVYSANNATYAMAEYVGEGSIFNFVAKMNKKLKQLGLQ 300

Query: 173 N-TIYKNASGLHDKNQIT-----TARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRII 224
           N   Y   +GL  +N        T R    L I   K + +Y +   I+  K       I
Sbjct: 301 NDIKYHTPAGLPTRNTKMPMDEGTPRGIYKLSIEALK-YDKYIEIAGIKNTKIYNGKISI 359

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            N N L+ +   + GIKTG+ + + +NI  +++++   ++ VVMG  T + RD     +I
Sbjct: 360 RNRNHLIGE-DGVYGIKTGFHKEAKYNITVAVKFEGIDLIIVVMGGETYKTRDDLVRTII 418

Query: 285 TSFLEKKTLKHQQTHRK 301
            +  E  T+ + Q  RK
Sbjct: 419 ANLKENYTVINGQLIRK 435


>gi|145599789|ref|YP_001163865.1| D-alanyl-D-alanine endopeptidase [Yersinia pestis Pestoides F]
 gi|186894625|ref|YP_001871737.1| D-alanyl-D-alanine endopeptidase [Yersinia pseudotuberculosis
           PB1/+]
 gi|108776609|gb|ABG19128.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Yersinia pestis Nepal516]
 gi|108778797|gb|ABG12855.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Yersinia pestis Antiqua]
 gi|145211485|gb|ABP40892.1| penicillin-binding protein 7 precursor [Yersinia pestis Pestoides
           F]
 gi|186697651|gb|ACC88280.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Yersinia
           pseudotuberculosis PB1/+]
          Length = 323

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 102/241 (42%), Gaps = 15/241 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  N++      +   P AS+TK+MT  ++ +     KL L+  + V      +
Sbjct: 58  SAMVVDLQTNKVIYANNADKVVPIASITKLMTAMVVLDA----KLPLDEILSVDIDQTKE 113

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  ++  +  + +  +L  +  S N  + +      G    F   M+ KAK +GM 
Sbjct: 114 LKGVFSRVRVNSEISRKDMLLLTLMSSENRAAASLAHHYPGGYNAFIKAMNAKAKSLGMN 173

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT--N 226
           +T Y   +GL   N ++TARD A L ++  K +P   +  +  +    FR  N  +   N
Sbjct: 174 STHYVEPTGLSI-NNVSTARDLAKL-LMATKQYPLIGQLSTTTEKMATFREPNYTLPFRN 231

Query: 227 HNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+     NI   KTG+T  +G  +V        P+  VV+           A  L +
Sbjct: 232 TNHLVYNDKWNIQLTKTGFTNQAGHCLVMRTVIGKRPVALVVLDAFGKYTHFADANRLRS 291

Query: 286 S 286
            
Sbjct: 292 W 292


>gi|205359523|ref|ZP_02830125.2| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205345065|gb|EDZ31829.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
          Length = 302

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNT--QIPVSKTAA 111
           S++++D+N N++      +  R  AS+TK+MT  ++ +     +L L+   ++ +S+T  
Sbjct: 29  SAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDA----RLPLDEILKVDISQTP- 83

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +   +  G    F   M+ KAK +GM
Sbjct: 84  EMKGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGM 143

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT-- 225
            +T +   +GL   N ++TARD   L ++  K +P   +  + R+    F +    +   
Sbjct: 144 THTRFVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTREDMATFSHPAYTLPFR 201

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L 
Sbjct: 202 NTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTMINNKPVALVVMDAFGKYTHFADASRLR 261

Query: 285 TS 286
           T 
Sbjct: 262 TW 263


>gi|299771873|ref|YP_003733899.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter sp. DR1]
 gi|298701961|gb|ADI92526.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
           penicillin-binding protein 8 [Acinetobacter sp. DR1]
          Length = 335

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 114/263 (43%), Gaps = 18/263 (6%)

Query: 39  IIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           +  I   S  +A+P  S+   +V+D    ++   K  +     AS+TK+MT  +  +   
Sbjct: 74  LAPIRDTSGYNAQPSVSARAALVMDAQTGEVLFSKNTNASVPIASITKLMTAVVTADA-- 131

Query: 95  SKKLHLNTQIP---VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
             +L+++ +I    +    A    S   L+        + +L  + +S N  + A     
Sbjct: 132 --RLNMSEEIMLEQIDFAGANGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTY 189

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            G    F   M+ KA+ +GM  T Y  ++GL D   +++ARD  IL     + +    ++
Sbjct: 190 PGGRPAFVAAMNAKARALGMNATHYYESTGL-DPRNVSSARDLGILASTASQ-YGLIRQF 247

Query: 212 FSIRKFRYR--NRII--TNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
            +   + +    R++   N N L+ N   NI+  KTGY   +G  +V        P V V
Sbjct: 248 STTPTYDFNLGYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIV 307

Query: 267 VMGMPTSQERDQKALELITSFLE 289
           ++G P++Q R+  A  L+     
Sbjct: 308 LLGEPSTQARNNDATNLLGWLSN 330


>gi|191165362|ref|ZP_03027204.1| penicillin-binding protein 7 [Escherichia coli B7A]
 gi|190904525|gb|EDV64232.1| penicillin-binding protein 7 [Escherichia coli B7A]
          Length = 313

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 107/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAA 111
           S++++D+N N++      +  R  AS++K+MT  ++       +L L+ +  + +S+T  
Sbjct: 45  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLNA----RLPLDEKLKVDISQTP- 99

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +      G  K F   M+ KAK +GM
Sbjct: 100 EMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGM 159

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIIT---- 225
            NT +   +GL   N ++TARD   L ++  K +P   +  + R+    + N   T    
Sbjct: 160 NNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFR 217

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L 
Sbjct: 218 NTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLR 277

Query: 285 TS 286
           T 
Sbjct: 278 TW 279


>gi|296120094|ref|ZP_06838648.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295967248|gb|EFG80519.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 480

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/293 (20%), Positives = 115/293 (39%), Gaps = 17/293 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + IV D++  ++   K    RY PAS+ K++   +  + L  KK+     +  +   A
Sbjct: 158 ASAWIVSDLDSGEIVAMKDPHGRYRPASILKVLLAMVAIDELDLKKV-----VTGTDEDA 212

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S + +    ++T EQ +  L+  S ND + A  + + G E+     ++  A+ +G 
Sbjct: 213 AIDGSAVGIGPGGHYTVEQLLQGLLMASGNDAAHALAQQLGGDEETLTK-INQLAQDLGA 271

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI------IT 225
           ++T   + SGL      T+A D A+L     KN P + +        +          + 
Sbjct: 272 RSTFAASYSGLDAPGMSTSASDMALLYTEAFKN-PTFARMVGTDTAEFPGYGDLEGYELG 330

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE--RDQKALEL 283
           N N L     +  G KTGYT ++    V +L      ++AV++           ++A  L
Sbjct: 331 NDNGLFMNDPDGIGGKTGYTDDANHTFVGALDRDGRRLMAVILDTTIDHGPRAWEQAQML 390

Query: 284 ITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
           +    +        T     L     + S  + +     S    + A+   TQ
Sbjct: 391 LDEAYDVPAGAGVSTLDDIKLVGMPAETSSAVPQAA-QASGSDVVAAEESHTQ 442


>gi|125554420|gb|EAZ00026.1| hypothetical protein OsI_22026 [Oryza sativa Indica Group]
          Length = 307

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/255 (23%), Positives = 107/255 (41%), Gaps = 15/255 (5%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
            ++ A+        S++++D+N N++      D  R  AS+TK+MT  ++ +      L 
Sbjct: 29  AVTTAAAQPQIASGSAMIVDLNTNKVIYASHPDLVRPIASITKLMTAMVVLDAH----LP 84

Query: 100 LNTQIPVS-KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
           L+ ++ V              ++  +  + +  +L  +  S N  + +      G    F
Sbjct: 85  LDEKLKVDISHTPEMKGIYSRVRLNSEISRKNMLLLALMSSENRAAASLAHHYPGGYDAF 144

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-- 216
              M+ KAK +GM NT Y   +GL   N ++TARD   L ++  K +P   +  + R+  
Sbjct: 145 IRAMNAKAKALGMNNTHYVEPTGLSI-NNVSTARDLTKL-LIASKQYPLIGQLSTTREEM 202

Query: 217 FRYRNRIIT----NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
             + N   T    N N L+ +   NI   KTG+T  +G  +V    +   P+  VVM   
Sbjct: 203 ATFANPAYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVFNGKPVALVVMDAF 262

Query: 272 TSQERDQKALELITS 286
                   A  L T 
Sbjct: 263 GKYTHFADASRLRTW 277


>gi|295110612|emb|CBL24565.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162]
          Length = 417

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 114/254 (44%), Gaps = 23/254 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++++++ + N     K  D+  YP +  K+MT  +  E  Q     L+ Q+ ++ T  
Sbjct: 56  STAAVIMEDSTNTTLYAKNMDQVLYPGATVKVMTTLLALENTQ-----LSDQVTMTATGV 110

Query: 112 T---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
           +      + +  +    FT EQ + A++  SANDV+    E I GS   F  +M+ +A +
Sbjct: 111 SGVTDGGANISAQIDEVFTVEQCLYAIMLASANDVALQLAEHIGGSVDGFVQMMNARAPE 170

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-------RN 221
           +G  NT++ N +GL D+NQ TTA D A++      N   +    S   +          +
Sbjct: 171 LGCTNTVFTNPTGLPDENQHTTAHDMALIMKAAADN-ESFQTIASTTSYTIPATNVSGGD 229

Query: 222 RIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           R++TN+  +L            G + GYT  SG  +V S +     ++AVV+   +    
Sbjct: 230 RVLTNNFSMLTNTNAAYYQYCTGGREGYTEASGSTLVCSAQKNGITLIAVVLQGTSGTT- 288

Query: 277 DQKALELITSFLEK 290
             +A  L+    + 
Sbjct: 289 ATEAASLLNYGFDN 302


>gi|260891367|ref|ZP_05902630.1| beta-lactamase [Leptotrichia hofstadii F0254]
 gi|260858750|gb|EEX73250.1| beta-lactamase [Leptotrichia hofstadii F0254]
          Length = 492

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 66/272 (24%), Positives = 124/272 (45%), Gaps = 17/272 (6%)

Query: 64  NQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKE 122
            ++   K    ++P ASLTK+M + +  E +      L+ +I  +        S L  K 
Sbjct: 151 GKILKEKMSRQKHPIASLTKVMNILVALEQVDRGNAKLDDKICFTPEFVNMGGSWLNAKA 210

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASG 181
              +T    + A I  SAN+ +      I  G+   F  LM++KAK++GM +T Y   +G
Sbjct: 211 GDCYTLRDLLRAEIIYSANNAAYLVAHHIGKGNIDNFVQLMNDKAKELGMNDTRYYTPAG 270

Query: 182 LH----DKNQ-ITTARDQAILGILLRKNFPQYYKYFSIRKF-----RYRNRIITNHNKLL 231
           L     +KN  I+TA D  +LG    ++  +   +    +         + + +N N LL
Sbjct: 271 LPSSMTNKNMDISTAYDMYLLGKRAIRD-ERLRAWMKESELVLQNSEGEDVVYSNRNHLL 329

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
           ++   I G+KTG+   +G+N++ S +  +  I++V +G  +   R +   +  T  LEK+
Sbjct: 330 DQF-GIYGLKTGFHAQAGYNMIVSSKIGNLEIISVTLGNKSDDARTEDQEQEFTQ-LEKR 387

Query: 292 TLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYS 323
            +   +  ++  +      K+   K++K   S
Sbjct: 388 MIPVYKAGQE--IGGKFKIKNAEQKEIKGVLS 417


>gi|145517883|ref|XP_001444819.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412252|emb|CAK77422.1| unnamed protein product [Paramecium tetraurelia]
          Length = 397

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 119/288 (41%), Gaps = 17/288 (5%)

Query: 10  AKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTG- 68
           +KK+   Y    I  +  +    +IL   I +  + S        S  VI+    Q+ G 
Sbjct: 113 SKKSSEKYQQSPIKPKTAVSRAKRILPQQISITPLESVAPLVSAQSWCVINGKNGQLMGG 172

Query: 69  FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN-TQIPVSKTAATQNPSKLYLKEKTYFT 127
           + Q + R  AS+TK+MT ++  +  Q  +L L+ T       A     +   L      +
Sbjct: 173 YNQYKSRQMASITKIMTCWLALKLTQQFQLDLDNTYFT----AERIGGTTAQLSSGDKLS 228

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
               +  L+  S ND + +        +   F   M+  A+ IGM+ T Y N  GL+ + 
Sbjct: 229 IRDLLYGLMLPSGNDAAISLQHNFELYKGCDFIQQMNQNAQDIGMELTSYANPHGLYHEA 288

Query: 187 QITTARDQAILGILLRKN--FPQYYK---YFSIRKFRY---RNRIITNHNKLLNKMHNID 238
             ++A D  IL     +N  F    K   YFS  + ++   +     N N++L       
Sbjct: 289 NYSSAYDIGILTYHAMQNLQFASIVKTKIYFSEIEDKFGESKEIFWENTNRML--YQGFR 346

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           G+KTG T+ +G  +V      ++  + V++   +   R Q A++L+  
Sbjct: 347 GVKTGITKEAGPCVVEYFEDNENSYIIVLLNCRSVDLRWQDAIKLLDW 394


>gi|47566159|ref|ZP_00237187.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus
           G9241]
 gi|47556712|gb|EAL15043.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus
           G9241]
          Length = 428

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 66/282 (23%), Positives = 119/282 (42%), Gaps = 21/282 (7%)

Query: 59  IDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 55  IDAKTGDVLYDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 109

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ 
Sbjct: 110 YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSH 169

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  + ++        T    N +   
Sbjct: 170 FVTPNGLHDPNHYTTPFDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYF 228

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I+ VVM     +  E  ++  +       
Sbjct: 229 EN-PFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMADYSFGQFV 287

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
           K+T+      HQ+    +    + L+KS  +   K      +
Sbjct: 288 KQTVLDKHSWHQKATYLNKDIDSELEKSAELMLKKDEGKNVR 329


>gi|258625555|ref|ZP_05720443.1| D-alanyl-D-alanine endopeptidase [Vibrio mimicus VM603]
 gi|258582148|gb|EEW07009.1| D-alanyl-D-alanine endopeptidase [Vibrio mimicus VM603]
          Length = 317

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 108/244 (44%), Gaps = 15/244 (6%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KT 109
              S++VID+  N++      D  R  AS+TK+MT  +  +     KL ++T++P++ K 
Sbjct: 47  AANSALVIDLKTNEVIYSSNPDAVRPIASVTKLMTAIVTLDA----KLPMDTKLPITIKE 102

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A         ++  +  + +  +L  +  S N  + +      G  K F   M+NKAK +
Sbjct: 103 AKEMKGIHSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNNKAKAL 162

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------NRI 223
           GM+NT +   +GL +KN +++ARD  +L     K +P   +  +  K          +  
Sbjct: 163 GMKNTRFVEPTGLSEKN-VSSARDLVLLLKA-SKKYPMLGQLSATEKKTVTFAKPRYSLD 220

Query: 224 ITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
             N N+L+ N    ID  KTG+T  +G  +V   +     +  VV+           A  
Sbjct: 221 FRNTNRLVFNDNWKIDLTKTGFTNAAGHCLVMRTQMGKRQVAFVVLDTKGKLSPVGDANR 280

Query: 283 LITS 286
           L T 
Sbjct: 281 LRTW 284


>gi|167634406|ref|ZP_02392727.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0442]
 gi|254740331|ref|ZP_05198022.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Kruger B]
 gi|167530294|gb|EDR93020.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0442]
          Length = 428

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 69/282 (24%), Positives = 122/282 (43%), Gaps = 21/282 (7%)

Query: 59  IDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           IDV    +   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 55  IDVKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 109

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ 
Sbjct: 110 YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSH 169

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL 231
           +   +GLHD N+ TT  D A++   ++K +P+  +  + ++        T    N +   
Sbjct: 170 FVTPNGLHDPNRYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYF 228

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I+ VVM     +  E  ++  +       
Sbjct: 229 EN-PFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMADYSFGQFV 287

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
           K+T+      HQ+T   +    + L+KS  +   K      K
Sbjct: 288 KQTVLDKHSWHQKTTYLNKDIDSELEKSAELMLKKDEVKNVK 329


>gi|228984448|ref|ZP_04144626.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229154942|ref|ZP_04283056.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
 gi|228628500|gb|EEK85213.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
 gi|228775314|gb|EEM23702.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 407

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 66/282 (23%), Positives = 119/282 (42%), Gaps = 21/282 (7%)

Query: 59  IDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 34  IDAKTGDVLYDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 88

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ +AK++G  ++ 
Sbjct: 89  YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSH 148

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT----NHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  + ++        T    N +   
Sbjct: 149 FVTPNGLHDPNHYTTPFDMAMITRGVQK-YPEILQAMNTKRTTVTTSRQTVSIFNKSTYF 207

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I+ VVM     +  E  ++  +       
Sbjct: 208 EN-PFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMADYSFGQFV 266

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
           K+T+      HQ+    +    + L+KS  +   K      +
Sbjct: 267 KQTVLDKHSWHQKATYLNKDIDSELEKSAELMLKKDEGKNVR 308


>gi|323350405|ref|ZP_08086068.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           VMC66]
 gi|322123342|gb|EFX95020.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           VMC66]
          Length = 422

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 139/348 (39%), Gaps = 47/348 (13%)

Query: 31  MGKILFLSIIMISMASELHAK-----PKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMM 84
           M ++    ++++ M +   A         S++ +D    ++   K    P    S+T ++
Sbjct: 1   MKRLFLCLLVLVGMTASKVAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLL 60

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           T+Y+++E +    L  +T + +S  A    +  N S + L+ K  +  +  I A +  S+
Sbjct: 61  TVYLVYEAIDRGNLTADTYVDISDYAYNLTSNPNISNVPLEAK-RYKVKDLIAASLMSSS 119

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------------- 183
           N  + A  E + GSE+ F  +M  K K+ G+ +    N++GL+                 
Sbjct: 120 NSATIALAEKVGGSEENFVQMMKAKLKEWGITDATIVNSTGLNTLLLEYATEETEYSASA 179

Query: 184 -------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL----N 232
                  D     +A D A++   L  +FPQ  +  S    +     + N+N +L    N
Sbjct: 180 STSKKSKDTENKFSAYDLAVISRHLIMDFPQVTEITSKSTAKIAGTSLENYNFMLENQSN 239

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELIT--- 285
               +DG+K G +   G + V +       ++ VV+ +         R      L+    
Sbjct: 240 FRSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVLDVEQTDGDPYARFVATASLMNYVS 299

Query: 286 -SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
            +F +   +   + + K + +    K+  +     + ++  ++I  +A
Sbjct: 300 QNFTQTTIVAEGEAYNKSHSTVIDGKQKTVPAVASKDFTIIERIANQA 347


>gi|332365487|gb|EGJ43247.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK1059]
          Length = 422

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 139/348 (39%), Gaps = 47/348 (13%)

Query: 31  MGKILFLSIIMISMASELHAK-----PKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMM 84
           M ++    ++++ M +   A         S++ +D    ++   K    P    S+T ++
Sbjct: 1   MKRLFLCLLVLVGMTASKVAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLL 60

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           T+Y+++E +    L  +T + +S  A    +  N S + L+ K  +  +  I A +  S+
Sbjct: 61  TVYLVYEAIDRGDLTADTYVDISDYAYNLTSNPNISNVPLEAK-RYKVKDLIAASLMSSS 119

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------------- 183
           N  + A  E + GSE+ F  +M  K K+ G+++    N++GL+                 
Sbjct: 120 NSATIALAEKVGGSEENFVEMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYSASA 179

Query: 184 -------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL----N 232
                  D     +A D A++   L  +FPQ     S    +     + N+N +L    N
Sbjct: 180 STSKKSKDTENKFSAYDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSN 239

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELIT--- 285
               +DG+K G +   G + V +       ++ VV+ +         R      L+    
Sbjct: 240 FRSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVLDVEQTDGDPYARFVATASLMNYVS 299

Query: 286 -SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
            +F +   +   + + K   +    K+  +    ++ ++  ++I  +A
Sbjct: 300 QNFTQTTIVAEGEAYNKSKSTVIDGKQKTVPAVARKDFTIIERIANQA 347


>gi|326316983|ref|YP_004234655.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323373819|gb|ADX46088.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 371

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 101/247 (40%), Gaps = 14/247 (5%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLN 101
           S+A  L  K    ++VID +  ++   K D    P ASLTK+MT  +I E     KL ++
Sbjct: 103 SVADPLDLKSSV-ALVIDQDTQEVLLSKNDHAVLPIASLTKLMTGLLISEA----KLPMD 157

Query: 102 TQIPVSKTAATQNP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
             I +++        S   L   T  T  + +   +  S N  + A G    G  + F  
Sbjct: 158 EPITITQDDVDTEKFSSSRLAVGTTLTRGEMLHLALMSSENRAAHALGRTFPGGLEAFVA 217

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY- 219
            M+ KA+ IGM  T Y   +GL   NQ ++ARD A L  +   + P   +  +   +   
Sbjct: 218 RMNAKARLIGMTETRYVEPTGLSSHNQ-SSARDLATLVNVAHSD-PLLRELTTSPGYEVA 275

Query: 220 ---RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
              R     N N+L+ N   +I   KTGY   +G  +V         ++ V +       
Sbjct: 276 VGRRTLHFNNTNRLVKNPAWDIGLQKTGYISEAGRCLVMQAHIAGRKLIMVFLDSAGKFS 335

Query: 276 RDQKALE 282
           R   A  
Sbjct: 336 RLGDAER 342


>gi|157144931|ref|YP_001452250.1| D-alanyl-D-alanine endopeptidase [Citrobacter koseri ATCC BAA-895]
 gi|157082136|gb|ABV11814.1| hypothetical protein CKO_00660 [Citrobacter koseri ATCC BAA-895]
          Length = 311

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 107/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAA 111
           S++++D+N N++      +  R  AS+TK+MT  ++ +     +L L+ +  + +S+T  
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDA----RLPLDEKLKVDISQTP- 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +      G    F   M+ KAK +GM
Sbjct: 97  EMKGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNAKAKALGM 156

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIIT---- 225
            +T +   +GL   N ++TARD   L ++  K +P   +  + R+    + N   T    
Sbjct: 157 THTRFVEPTGLSIHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFANPAYTLPFR 214

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L 
Sbjct: 215 NTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTMINNKPVALVVMDAFGKYTHFADASRLR 274

Query: 285 TS 286
           T 
Sbjct: 275 TW 276


>gi|160944238|ref|ZP_02091467.1| hypothetical protein FAEPRAM212_01747 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444420|gb|EDP21424.1| hypothetical protein FAEPRAM212_01747 [Faecalibacterium prausnitzii
           M21/2]
          Length = 466

 Score =  183 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 117/298 (39%), Gaps = 30/298 (10%)

Query: 16  TYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSS------IVIDVNKNQ-MTG 68
           T+   + + +R   L+   L +++  +     ++  P  ++       + + +  + +  
Sbjct: 35  TFMLHNTFCRRLAALV-LTLAVAVSAVLPVFAVYPMPVQTATETEAVYLFNADTGKTILN 93

Query: 69  FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-------KTAATQNPSKLYLK 121
              D+ +Y ASLTK+MT  ++ E  +     LN ++ V        K     N + + L+
Sbjct: 94  QNADQQKYVASLTKLMTALLLVESGKD----LNGEVTVPTDLTQEFKDIQNANGTTIGLR 149

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
                     + A++  SAND ++     + GS   F   M+ KA ++G   T +  A G
Sbjct: 150 IGETVRRIDLLNAMLIVSANDAASVIAWDVGGSVVGFVQQMNAKAAELGCTGTNFTCAHG 209

Query: 182 LHDKNQITTARDQAILGILLRKN--FPQYYKYFS----IRKFRYRNRIITNHNKLLNKM- 234
           L D   ++TA+D A +     +N  F Q     S        R     I++ N L+N   
Sbjct: 210 LFDYGNVSTAQDLAKIAAACAENQTFAQVAGTASYVLPATNLRKAEHTISSSNSLMNSES 269

Query: 235 ----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
                 +  +K G+T  +G  IV   +        V++G  T +       +L     
Sbjct: 270 SNYREYVKWVKGGFTTLAGRCIVAFAQQDGHNYGLVILGCDTLEHLFTACDDLFDWAF 327


>gi|320086606|emb|CBY96377.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 315

 Score =  183 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNT--QIPVSKTAA 111
           S++++D+N N++      +  R  AS+TK+MT  ++ +     +L L+   ++ +S+T  
Sbjct: 42  SAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDA----RLPLDEILKVDISQTP- 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +   +  G    F   M+ KAK +GM
Sbjct: 97  EMKGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGM 156

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT-- 225
            +T +   +GL   N ++TARD   L ++  K +P   +  + R+    F +    +   
Sbjct: 157 THTRFVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTREDMATFSHPAYTLPFR 214

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L 
Sbjct: 215 NTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTMINNKPVALVVMDAFGKYTHFADASRLR 274

Query: 285 TS 286
           T 
Sbjct: 275 TW 276


>gi|295098157|emb|CBK87247.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 307

 Score =  183 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 59/241 (24%), Positives = 105/241 (43%), Gaps = 15/241 (6%)

Query: 55  SSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAAT 112
           S++++D+N N++      D  R  AS+TK+MT  ++ +     +L L+ ++ V       
Sbjct: 43  SAMIVDLNTNKVIYASHPDLVRPIASITKVMTAMVVLDA----RLPLDEKLKVDISHTPE 98

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  ++  +  + +  +L  +  S N  + +      G    F   M+ KAK +GM+
Sbjct: 99  MKGIYSRVRLNSEISRKNMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAKALGMK 158

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIIT----N 226
           NT +   +GL   N ++TARD   L ++  K +P   +  + R+    + N   T    N
Sbjct: 159 NTHFVEPTGLSIHN-VSTARDLTKL-LIASKQYPLIGQLSTTREEMATFSNPAYTLPFRN 216

Query: 227 HNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+ +   NI   KTG+T  +G  +V    +   P+  VVM           A  L T
Sbjct: 217 TNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVFNGKPVALVVMDAFGKYTHFADASRLRT 276

Query: 286 S 286
            
Sbjct: 277 W 277


>gi|229172016|ref|ZP_04299581.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
 gi|228611359|gb|EEK68616.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
          Length = 407

 Score =  183 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 67/284 (23%), Positives = 121/284 (42%), Gaps = 21/284 (7%)

Query: 59  IDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     +   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 34  IDAKTGDVLYNKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 88

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I G+ + FA +M+ KAK++G  ++ 
Sbjct: 89  YQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGNVENFAHMMNEKAKQLGATDSH 148

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIITNHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  + ++       +   I N +   
Sbjct: 149 FVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSSQTVSIFNKSTYF 207

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I+ VVM     +  E  ++  +       
Sbjct: 208 EN-PYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMADYSFGQFV 266

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           K+T+      HQ+    +    + L+KS  +   K      + I
Sbjct: 267 KQTVLDKHSWHQKATYLNKDIDSELEKSAELMLKKDEGKNVRTI 310


>gi|225378096|ref|ZP_03755317.1| hypothetical protein ROSEINA2194_03756 [Roseburia inulinivorans DSM
           16841]
 gi|225210097|gb|EEG92451.1| hypothetical protein ROSEINA2194_03756 [Roseburia inulinivorans DSM
           16841]
          Length = 328

 Score =  183 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 105/246 (42%), Gaps = 25/246 (10%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLY 119
            N +T  +   E  YPAS TK++T YI  +Y      +L   + VS+ AA Q  + S   
Sbjct: 89  TNTVTYAQNIYEKLYPASTTKILTAYIALKYG-----NLEDYVTVSENAANQASDSSVCG 143

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           LK       +  +  ++ +S ND + A  E I GS + FA +M+ +A  +G   + + N 
Sbjct: 144 LKAGDVVQLKDLLYGMMLKSGNDAAIAIAEHIGGSVEGFADMMNQEALAMGATRSHFVNP 203

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRN-------RIITNHNKL 230
           +GL D+N  T+  D  ++     ++   +    S   +   Y +       +   N N+ 
Sbjct: 204 NGLPDENHYTSVYDLYLIFQNAVQD-QTFLDIISTMSYDVVYTDVNGAGVEKTWENTNQY 262

Query: 231 LNKMH------NIDGIKTGYTRNSGFNIVT-SLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           L           + G KTG T  +G+ +V  S      PIV++V+             E+
Sbjct: 263 LTGKEKAPEGITVVGGKTGTTGAAGYCLVLYSYNASGQPIVSIVLKADGKSNLYLLMNEM 322

Query: 284 ITSFLE 289
           ++ F  
Sbjct: 323 LSGFAN 328


>gi|203284509|ref|YP_002222249.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia duttonii Ly]
 gi|203288043|ref|YP_002223058.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia recurrentis A1]
 gi|201083952|gb|ACH93543.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia duttonii Ly]
 gi|201085263|gb|ACH94837.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia recurrentis A1]
          Length = 333

 Score =  183 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 75/302 (24%), Positives = 130/302 (43%), Gaps = 32/302 (10%)

Query: 22  IYIQRNIQLMGKILFLS-----IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR- 75
           IY  + I ++  +  L        +  +  E       S +++D +   +   K      
Sbjct: 24  IYCMKIIFIIMSMFLLFNAYKLFSITLLQIEKVVLDAKSVVLLDCDTKCVLYSKNPNLVF 83

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN----PSKLYLKEKTYFTTEQG 131
            PASLTK++T+Y      + + + LN  +P+S +A+  N     S ++L+E    T E+ 
Sbjct: 84  PPASLTKLVTIYTALVEAKKQNIDLNAIVPISSSASYYNLPLDSSLMFLEEGHKVTFEEL 143

Query: 132 ILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
           +  L+  S ND + A  EFI G +   F  LM++   K+ + NT + + SG   KN   T
Sbjct: 144 LKGLVVSSGNDAAIAIAEFIVGKDLNNFVNLMNDNVFKLKLINTSFVDTSGYS-KNNKIT 202

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYR--------------NRIITNHNKLLNKMHN 236
           A + A+        F    K  S++ F Y               N    N N L+     
Sbjct: 203 ALEMALFAKTYIDEFEFMLKIHSLKDFIYPKPENLGSTSSSKMLNLKQDNKNILILNYPY 262

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP------TSQERDQKALELITSFLEK 290
            DG+KTGY + SG N+V + +  D  ++AV++G+         ++R   A +L     + 
Sbjct: 263 ADGLKTGYIKTSGLNLVATAKKDDIRLIAVILGVSKGVDNIGEKKRSLIAQKLFEYGFDH 322

Query: 291 KT 292
            +
Sbjct: 323 YS 324


>gi|238784240|ref|ZP_04628252.1| D-alanyl-D-alanine endopeptidase [Yersinia bercovieri ATCC 43970]
 gi|238714807|gb|EEQ06807.1| D-alanyl-D-alanine endopeptidase [Yersinia bercovieri ATCC 43970]
          Length = 313

 Score =  183 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 98/242 (40%), Gaps = 15/242 (6%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S++V+D+  N++      DE    AS+TK+MT  ++ +     KL L+  I V       
Sbjct: 48  SAMVVDLQTNKVIYANNPDEVVPIASITKLMTAMVVLDA----KLPLDEIISVDVHQTKE 103

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  ++  +  + +  +L  +  S N  + +      G    F   M+ KAK +GM 
Sbjct: 104 MKGVFSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFVNAMNVKAKSLGMT 163

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT--N 226
            T Y   +GL   + ++TARD   L ++  K +P   +  +  +    FR  N  +   N
Sbjct: 164 KTHYTEPTGLSI-DNVSTARDLTKL-LIATKQYPLIGQLSTTTEKMATFREPNYTLPFRN 221

Query: 227 HNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+     NI   KTG+T  +G  +         P+  VV+           A  L +
Sbjct: 222 TNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGSRPVALVVLDAFGKYTHFADANRLRS 281

Query: 286 SF 287
             
Sbjct: 282 WM 283


>gi|330685765|gb|EGG97400.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus
           epidermidis VCU121]
          Length = 429

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 69/320 (21%), Positives = 127/320 (39%), Gaps = 49/320 (15%)

Query: 24  IQRNIQLMGKILFLSIIMISMASE-------------------LHAKPKYSSIVIDVNKN 64
           ++R   L+  + F+  I+   A+                      A    S+I +  +  
Sbjct: 1   MKRIFILIITMFFVLNIITPFANAENGDVTPVQVAIDNGYSKVTEAYQPESAINVSQD-G 59

Query: 65  QMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKLY 119
           Q+     +D+  YPAS+TK+MT+Y+  E ++ KKL LN ++ ++            S   
Sbjct: 60  QILYEYNKDKVWYPASMTKLMTMYLTLEAVKDKKLSLNDEVKMTDREYQMSTLPELSNTK 119

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           L     +T    +   ++ S+N  +   GE +SG+   F  LM+ KAK++GM++T Y N 
Sbjct: 120 LYPGQKWTISDLLQITVSNSSNAAALILGEQVSGNVNDFTDLMNKKAKELGMKDTHYVNP 179

Query: 180 SGLHD--------------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
           SG  +              +N  T+ARD AIL   +    P+   +              
Sbjct: 180 SGAENTRLKSFAPSKYKKTENTTTSARDYAILDQHVINETPKILDFTKQLAPTTHGVTYY 239

Query: 226 NHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------SQE 275
             N  L+     +   DG+KTG +  + +N   + +     I  V++G          ++
Sbjct: 240 TFNHSLDGADMSLPGTDGLKTGSSDTADYNHTITTKRNGFRINQVILGAGDYKHIGGEKQ 299

Query: 276 RDQKALELITSFLEKKTLKH 295
           R+     L+     +   + 
Sbjct: 300 RNMMGNALMERSFNQYKYEK 319


>gi|146312376|ref|YP_001177450.1| D-alanyl-D-alanine endopeptidase [Enterobacter sp. 638]
 gi|145319252|gb|ABP61399.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Enterobacter sp. 638]
          Length = 315

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 62/264 (23%), Positives = 114/264 (43%), Gaps = 18/264 (6%)

Query: 35  LFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIF 90
           + +  I  + A    A+P+    S++++D+N N++      D  R  AS+TK+MT  ++ 
Sbjct: 19  VAVPAIAKTPALTTAAQPEIASGSAMIVDLNTNKVIYSSHPDLVRPIASITKLMTAMVVL 78

Query: 91  EYLQSKKLHLNTQIPVS-KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           +     +L L+ ++ V              ++  +  + +  +L  +  S N  + +   
Sbjct: 79  DA----RLPLDEKLKVDISHTPEMKGIYSRVRLNSEISRKNMLLLALMSSENRAAASLAH 134

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
              G    F   M+ KAK +GM+NT +   +GL   N ++TARD   + ++  K +P   
Sbjct: 135 HYPGGYDAFIRAMNAKAKSLGMKNTRFVEPTGLSIHN-VSTARDLTQM-LIASKQYPLIG 192

Query: 210 KYFSIRK--FRYRNRIIT----NHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           +  + R+    + N   T    N N L+ +   NI   KTG+T  +G  +V    +   P
Sbjct: 193 QLSTTREEMATFANPAYTLPFRNTNHLVYRENWNIQLTKTGFTNAAGHCLVMRTVFNGKP 252

Query: 263 IVAVVMGMPTSQERDQKALELITS 286
           +  VVM           A  L T 
Sbjct: 253 VALVVMDAFGKYTHFADASRLRTW 276


>gi|296103782|ref|YP_003613928.1| D-alanyl-D-alanine endopeptidase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058241|gb|ADF62979.1| D-alanyl-D-alanine endopeptidase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 307

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 60/255 (23%), Positives = 107/255 (41%), Gaps = 15/255 (5%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
            ++ A+        S++++D+N N++      D  R  AS+TK+MT  ++ +      L 
Sbjct: 29  AVTTAAAQPQIASGSAMIVDLNTNKVIYASHPDLVRPIASITKLMTAMVVLDAH----LP 84

Query: 100 LNTQIPVS-KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
           L+ ++ V              ++  +  + +  +L  +  S N  + +      G    F
Sbjct: 85  LDEKLKVDISHTPEMKGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHHYPGGYDAF 144

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-- 216
              M+ KAK +GM NT +   +GL   N ++TARD   L ++  K +P   +  + R+  
Sbjct: 145 IRAMNAKAKALGMNNTRFVEPTGLSIHN-VSTARDLTKL-LIASKQYPLIGQLSTTREEM 202

Query: 217 FRYRNRIIT----NHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
             + N   T    N N L+ +   NI   KTG+T  +G  +V    +   P+  VVM   
Sbjct: 203 ATFANPAYTLPFRNTNHLVYRENWNIQLTKTGFTNAAGHCLVMRTVFNGKPVALVVMDAF 262

Query: 272 TSQERDQKALELITS 286
                   A  L T 
Sbjct: 263 GKYTHFADASRLRTW 277


>gi|330831299|ref|YP_004394251.1| D-alanyl-D-alanine carboxypeptidase; penicillin binding protein 7
           [Aeromonas veronii B565]
 gi|328806435|gb|AEB51634.1| D-alanyl-D-alanine carboxypeptidase; penicillin binding protein 7
           [Aeromonas veronii B565]
          Length = 259

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 63/266 (23%), Positives = 117/266 (43%), Gaps = 22/266 (8%)

Query: 36  FLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFE 91
            L +  +S A    AK +    S++V+DV   +    K     R  ASLTK+MT  ++ +
Sbjct: 1   MLGLPAVSAAPN-PAKLEVRSSSALVVDVKTGKTLYQKNATKVRPIASLTKLMTALVVLD 59

Query: 92  YLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
                K +LN  I V K    +   +   ++  T  T    +   +  S N +++A    
Sbjct: 60  A----KQNLNQTITVDKNDLDRVKHTHSRIRMGTKVTRRDALHLALMSSENRMASALARH 115

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
             G    F   M+NKA+++GM+NT + +++GL  +N ++TA+D   L     +  P   +
Sbjct: 116 YPGGRSAFVRAMNNKARQLGMRNTHFYDSTGLSTRN-VSTAQDLGKLAAAAYRQ-PLIRQ 173

Query: 211 YFSI--RKFRYR----NRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           +     R+ R+     + +  N N L+ N   ++   KTG+T  +G  +V   +     +
Sbjct: 174 FTQDENREMRFSAPAYSLMFNNTNPLVKNPDWDVRLSKTGFTDEAGRCLVMRAKPDSREL 233

Query: 264 VAVVM---GMPTSQERDQKALELITS 286
             V++   G  T      +  + + S
Sbjct: 234 AIVLLNSVGKRTPIGDANRIRKWLKS 259


>gi|295835113|ref|ZP_06822046.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. SPB74]
 gi|295825314|gb|EFG64181.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. SPB74]
          Length = 322

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 100/262 (38%), Gaps = 23/262 (8%)

Query: 47  ELHAKPKYSSIVIDVNKN----QMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           +  A     + ++D        ++      DE    AS TK+MT  ++ ++ +  +  + 
Sbjct: 62  DAPAVEAGHAFLLDARDGSQERELWAGADADESVPVASTTKIMTAVVVLKHPEWLERRIT 121

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE------ 155
            +            S   L+     T  Q + A++  S  D + A  +     +      
Sbjct: 122 VKQEYRDYVQEVGASTADLQTGDTLTARQLLHAMLIPSGADAARALADNFGNGDTEEARI 181

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             F   M+ +A+++G++ T + +  G+   N  +TARD A LG       P + +     
Sbjct: 182 ADFIAQMNAEAQQLGLKGTHFDSVDGISQGNNHSTARDLAKLGQRAMLQ-PVFAEVVKNT 240

Query: 216 KF---------RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           ++         R R     N N+LL       G+KTG     G+ +V +    +  ++ V
Sbjct: 241 QYKTEAPAANGRTRYYTWNNTNELLGTYDGALGVKTGSGPEDGYCVVFAAERDNRTLIGV 300

Query: 267 VMGMPTSQERDQKALELITSFL 288
           V+G    + R   A +++    
Sbjct: 301 VLG--DDEGRFDDATKILDWGF 320


>gi|315505737|ref|YP_004084624.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Micromonospora
           sp. L5]
 gi|315412356|gb|ADU10473.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Micromonospora
           sp. L5]
          Length = 419

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 99/266 (37%), Gaps = 16/266 (6%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQS 95
             +++   +S   A    S +V D++   + G         PAS+ K++    +   L  
Sbjct: 65  AGLVVPPASSAPPAVTATSWVVADLDSGAVLGGCGPHEYGVPASVQKLLLAATMLPRLDP 124

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE--FISG 153
            +      +     A     S + L E   +  E   L L+ RS N+ + A         
Sbjct: 125 HR---EVTVTAGDLAVEPGSSAVGLVEGGRYRIETIWLGLLLRSGNEAANALARLGGGPD 181

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
                   M+ +A ++G + T     SGL    Q T+A D A++      + P + +Y +
Sbjct: 182 GLAGGVRAMNEEAHRLGARQTHAVTPSGLDGPGQFTSAYDLALIARACFAD-PAFRRYAT 240

Query: 214 IR--------KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            R          R +   I+N N LL+      G KTG+T  +    V +       +V 
Sbjct: 241 TRIAQIPAQPAQRAKGFAISNDNMLLDHYPGALGGKTGFTDLARHTYVGAAERGGRRLVV 300

Query: 266 VVMGMPTSQER-DQKALELITSFLEK 290
            ++G   + +R  Q+   L+     +
Sbjct: 301 TLLGAEVTTQRGWQQGAALLDWGFAQ 326


>gi|120611767|ref|YP_971445.1| murein-DD-endopeptidase [Acidovorax citrulli AAC00-1]
 gi|120590231|gb|ABM33671.1| murein-DD-endopeptidase [Acidovorax citrulli AAC00-1]
          Length = 371

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 96/234 (41%), Gaps = 13/234 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++VID +  ++   K D    P ASLTK+MT  +I E     KL ++  I +++      
Sbjct: 115 ALVIDQDTQEVLLSKNDHAVLPIASLTKLMTGLLISEA----KLPMDEPITITQDDVDTE 170

Query: 115 P-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   L   T  T  + +   +  S N  + A G    G  + F   M+ KA+ IGM  
Sbjct: 171 KFSSSRLAVGTTLTRGEMLHLALMSSENRAAHALGRTFPGGLEAFVARMNAKARLIGMTE 230

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T Y   +GL   NQ ++ARD A L  +   + P   +  +   +      R     N N+
Sbjct: 231 TRYVEPTGLSSHNQ-SSARDLATLVNVAHAD-PLLRELTTSPGYEVAVGRRTLHFNNTNR 288

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           L+ N   +I   KTGY   +G  +V         ++ V +       R   A  
Sbjct: 289 LVKNPAWDIGLQKTGYISEAGRCLVMQAHIAGRKLIMVFLDSAGKFSRLGDAER 342


>gi|262402919|ref|ZP_06079479.1| murein-DD-endopeptidase [Vibrio sp. RC586]
 gi|262350418|gb|EEY99551.1| murein-DD-endopeptidase [Vibrio sp. RC586]
          Length = 315

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 105/244 (43%), Gaps = 15/244 (6%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KT 109
              S++VID+  N++      D  +  AS+TK+MT  +  +     KL ++T++P++ K 
Sbjct: 45  AANSALVIDLKTNEVIYSSNPDAVKPIASVTKLMTAIVTLDA----KLPMDTKLPITIKE 100

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A         +K  +  + +  +L  +  S N  + +      G  K F   M+ KAK +
Sbjct: 101 AKEMKGVHSRVKIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNTKAKAL 160

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------NRI 223
           GM+NT +   +GL  KN +++ARD  +L     K +P   +  S  K             
Sbjct: 161 GMKNTRFVEPTGLSPKN-VSSARDLVVLLKA-SKKYPLLGQLSSTEKKTVTFAKPRYTLD 218

Query: 224 ITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
             N N+L+ N    ID  KTG+T  +G  +V   +     +  VV+           A  
Sbjct: 219 FRNTNRLVFNDNWKIDLTKTGFTNAAGHCLVMRTQMGKRQVAFVVLDTKGKLSPVGDANR 278

Query: 283 LITS 286
           L T 
Sbjct: 279 LRTW 282


>gi|261340569|ref|ZP_05968427.1| beta-lactamase [Enterobacter cancerogenus ATCC 35316]
 gi|288316977|gb|EFC55915.1| beta-lactamase [Enterobacter cancerogenus ATCC 35316]
          Length = 306

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 61/264 (23%), Positives = 112/264 (42%), Gaps = 18/264 (6%)

Query: 35  LFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIF 90
           +   ++  + A    A+P+    S++++D+N N++      D  R  AS+TK+MT  ++ 
Sbjct: 19  VAAPVMAKTPAVTTAAQPQIASGSAMIVDLNTNKVIYASHPDLVRPIASITKLMTAMVVL 78

Query: 91  EYLQSKKLHLNTQIPVS-KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           +     +L L+ ++ V              ++  +  + +  +L  +  S N  + +   
Sbjct: 79  DA----RLPLDEKLKVDISHTPEMKGIYSRVRLNSEISRKNMLLLALMSSENRAAASLAH 134

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
              G    F   M+ KAK +GM NT +   +GL   N ++TARD   L ++  K +P   
Sbjct: 135 HYPGGYDAFIRAMNAKAKSLGMTNTRFVEPTGLSIHN-VSTARDLTKL-LVASKRYPLLG 192

Query: 210 KYFSIRK----FRYRNRIIT--NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           +  + R+    F      +   N N L+ +   NI   KTG+T  +G  +V    +   P
Sbjct: 193 QLSTTREDMATFSNPPYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVFNGKP 252

Query: 263 IVAVVMGMPTSQERDQKALELITS 286
           +  VVM           A  L T 
Sbjct: 253 VALVVMDAFGKYTHFADASRLRTW 276


>gi|187929017|ref|YP_001899504.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ralstonia
           pickettii 12J]
 gi|187725907|gb|ACD27072.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ralstonia
           pickettii 12J]
          Length = 396

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 59/294 (20%), Positives = 120/294 (40%), Gaps = 18/294 (6%)

Query: 2   LQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDV 61
           +++ +    K+  +    G+  ++         L  ++ + S    L  +    ++V+D 
Sbjct: 75  VRKVVTVKGKRRVIMVERGARPVRAAFVPASPTLGEAMGLRSTPDALALRSSV-ALVMDQ 133

Query: 62  NKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSK 117
           N  ++   K      P AS+TK+MT  ++ +  Q     ++  + ++           S+
Sbjct: 134 NNGEVLFQKNSSAVLPIASITKLMTALVVTDAHQP----MDELLEITDEDRDYERNTGSR 189

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
             L+  T  T E  +L  +  S N  ++A G    G    F   M+ KA ++GM +T Y 
Sbjct: 190 --LRFGTMLTREDLLLLALMSSENRAASALGRNYPGGRPAFVAAMNRKAHELGMNDTHYV 247

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY--RNRIIT--NHNKLLNK 233
           +++GL   N +++A+D A + I   K  P   ++ +  +       R +   N N+L+  
Sbjct: 248 DSNGLSSSN-VSSAQDLAKIVIAAYK-VPLIRQFTTTPEHTVSANGRTLHYVNTNRLVRG 305

Query: 234 MHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
                G+ KTG+   +G  +V         +V V +    +  R   A  +   
Sbjct: 306 GEWDIGLQKTGFINEAGRCLVMQANVHGRNVVMVFLDSAGNLTRFADATRVRNW 359


>gi|163939181|ref|YP_001644065.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
 gi|163861378|gb|ABY42437.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
          Length = 428

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 75/335 (22%), Positives = 133/335 (39%), Gaps = 36/335 (10%)

Query: 23  YIQRNIQLMGKILFLSIIMISMAS--------ELHAKPKYS-------SIVIDVNKNQMT 67
           + + ++ +M   LF    M   A         ++   P          +  ID     M 
Sbjct: 4   FKKISVFVMVICLFFLTPMTLYAETNIGVNPEQVAPPPAEGPNVFSQFATTIDAKTGDML 63

Query: 68  GFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK--EKT 124
             K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S   ++     
Sbjct: 64  YDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSNYQIEFHPGE 118

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
                  ++ L+  SANDVS A  E I GS + FA +M+ +AK++G +++ +   +GLHD
Sbjct: 119 TINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGAKDSHFVTPNGLHD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFS----IRKFRYRNRIITNHNKLLNKMHNIDGI 240
            N  TT  D A++   ++K +P+  +  +          +   I N +          G 
Sbjct: 179 PNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSTQTVSIFNKSTYFEN-PYSMGG 236

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLEKKTL----- 293
           KTG+T  +   +V       + I+ VVM     +  E  ++  E       K+T+     
Sbjct: 237 KTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMAEYSFGQFTKQTVLDKHS 296

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
            HQ+    +    + L+KS  +   K      K  
Sbjct: 297 WHQKAKYLNKDVDSELEKSAELMLKKDEGKNIKTA 331


>gi|302524153|ref|ZP_07276495.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. AA4]
 gi|302433048|gb|EFL04864.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. AA4]
          Length = 409

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 95/242 (39%), Gaps = 15/242 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S ++ D++   +   K    R  PASL K +   ++       +L     I  +K  A Q
Sbjct: 98  SWVLQDLDTGAVVAAKDPHARERPASLIKTLLALVVV-----TELKPEQVIVPTKEDAEQ 152

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             + + +    ++T +Q +  L+  S NDV+ AF   + G +     + +  A +IG  +
Sbjct: 153 ECTCVGITAGGHYTVDQLLHGLLMHSGNDVAHAFATALGGVDAAVVKM-NALAARIGATD 211

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------NRIITNH 227
           T     SGL      T+A D +++     K  P++ K  + + F            + N 
Sbjct: 212 TRAATPSGLDGPGMSTSAYDLSLVFHYAMKQ-PEFAKVVATKNFTIPAVDGKPPIPVFND 270

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK-ALELITS 286
           NKLL       G KTG+T ++    V         +  V+M       +    A +L+  
Sbjct: 271 NKLLGVYPGFLGGKTGFTDDARHTYVGGAERDGHRLAIVMMRAEQRPTKVVDQAAKLLDY 330

Query: 287 FL 288
             
Sbjct: 331 GF 332


>gi|160915010|ref|ZP_02077223.1| hypothetical protein EUBDOL_01017 [Eubacterium dolichum DSM 3991]
 gi|158432809|gb|EDP11098.1| hypothetical protein EUBDOL_01017 [Eubacterium dolichum DSM 3991]
          Length = 330

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 104/220 (47%), Gaps = 10/220 (4%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S  V+     Q+   K    +   AS++K+MT  I  E     K +L  +   S+   
Sbjct: 22  AESYCVMSGEDQQVLEEKDMHKQQSVASISKIMTAMIAIE-----KGNLQDRWQCSEAIE 76

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           T + S +YL++    + E  +  L+ RS ND +    E + G+E+ F  +M+ KAK+IGM
Sbjct: 77  TVDGSMIYLQKDQMVSLESLLYGLMLRSGNDAAVEIAEHVGGNEENFVAMMNEKAKEIGM 136

Query: 172 QNTIYKNASGLH--DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR-YRNRIITNHN 228
             T+++N +GL   D   ++TA D A+L     KN   + K    + +    N    N N
Sbjct: 137 SRTLFRNPTGLDEKDGGNVSTAYDMALLMSYALKN-RTFRKIAGTKYYTSEWNYRWKNKN 195

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +LL         KTG+T+ +G  +VTS + K    + V +
Sbjct: 196 RLLFSYDKSTAGKTGFTKQAGRTLVTSAKNKQLESIVVTL 235


>gi|227549943|ref|ZP_03979992.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227077959|gb|EEI15922.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 421

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 102/240 (42%), Gaps = 15/240 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + +V D++  ++   K    RY PAS+ K++   +  +     +L L+ Q+ VS  +A
Sbjct: 94  ASAWLVADLDTGEVVAMKDPHGRYRPASIIKVLLALVAID-----ELPLDKQVTVSAESA 148

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S   +     +T    +  L+  S ND + A  + + G E      ++  A+++GM
Sbjct: 149 NMEGSAAGIGAGGVYTVNDLLHGLLMASGNDTAHALAQELGGDEAT-LQKVNALAQQLGM 207

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR------IIT 225
            +T     +GL      ++A D A+       N   + +    + + +          + 
Sbjct: 208 NDTRVATYTGLDRPGMSSSAWDMALAYRAAFGN-ETFARIVDTQSYPFPGFDDLPGFELW 266

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-DQKALELI 284
           N N L        G KTGYT ++    V ++ +    +VAVV+    ++ R  Q+A +L+
Sbjct: 267 NDNALYLNDPEGIGGKTGYTDDANHTFVGAVNHDGRRLVAVVLDTTVNKARAWQQAQQLL 326


>gi|327460573|gb|EGF06908.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK1]
          Length = 422

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 139/348 (39%), Gaps = 47/348 (13%)

Query: 31  MGKILFLSIIMISMASELHAK-----PKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMM 84
           M ++    ++++ M +   A         S++ +D    ++   K    P    S+T ++
Sbjct: 1   MKRLFLCLLVLVGMTASKVAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLL 60

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           T+Y+++E +    L  +T + +S  A    +  N S + L+ K  +  +  I A +  S+
Sbjct: 61  TVYLVYEAIDRGDLTADTYVDISDYAYNLTSNPNISNVPLEAK-RYKVKDLIAASLMSSS 119

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------------- 183
           N  + A  E + GSE+ F  +M  K K+ G+++    N++GL+                 
Sbjct: 120 NSATIALAEKVGGSEENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYSASA 179

Query: 184 -------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL----N 232
                  D     +A D A++   L  +FPQ  +  S    +     + N+N +L    N
Sbjct: 180 STFKKSKDTENKFSAYDLAVISRHLIMDFPQVTEITSKSTAKIAGTSLENYNFMLENQSN 239

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELIT--- 285
               +DG+K G +   G + V +       ++ VV+ +         R      L+    
Sbjct: 240 FRSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVLDVDQTDGDPYARFVATASLMNYVS 299

Query: 286 -SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
            +F +   +   + + K   +    K+  +     + ++  ++I  +A
Sbjct: 300 QNFTQTTIVAEGEAYNKSKSTVIDGKQKTVPAVASKDFTIIERIANQA 347


>gi|118362318|ref|XP_001014386.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila]
 gi|89296153|gb|EAR94141.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila SB210]
          Length = 988

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 78/331 (23%), Positives = 133/331 (40%), Gaps = 49/331 (14%)

Query: 53  KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S  + DV KN+ +   K  +PR  ASLTK+MT YII + +Q KK+    QI VS+ AA
Sbjct: 652 AKSVCIFDVEKNKPILCLKGKKPREVASLTKIMTCYIICQAIQKKKIKQTEQIKVSRAAA 711

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS------------------- 152
           +   +  YL+     +    +  L+  S ND + A  E++                    
Sbjct: 712 SMIGTSAYLRSGDQLSVWDLLHGLMLPSGNDAAFALAEYMGRILFFEDNDYKEQLQQNPN 771

Query: 153 --------GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
                    + K F   M+  AK + + NT Y N  GL +K+  ++A D   L       
Sbjct: 772 SFENCKAKDAIKCFLKEMNRVAKDLKLANTKYSNPHGLVNKSNRSSALDICKLSAHCLTK 831

Query: 205 FPQYYKYFSIRKFRYRNR---------IITNHNKLLNKMHNI-DGIKTGYTRNSGFNIVT 254
              + +    +++  + R            N NK L + + I DG+KTG T  +G  + T
Sbjct: 832 SQLFRQIVKTKQYTCQVRNKQGSIRIASWENTNKCLLRYNTICDGVKTGVTCTAGPCLTT 891

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL-----------KHQQTHRKDN 303
           S R KD   +  ++   + + R  ++  +     EK  +           K +Q +++++
Sbjct: 892 SWRVKDRHFIITILKCDSLELRYSESQRVFAWICEKLGIELSAEEKMPYEKVKQLYKRNS 951

Query: 304 LSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
           + S    K         +      I  K+ S
Sbjct: 952 VESIQSMKESCSNNSLSSKQNSNLILQKSDS 982


>gi|157151599|ref|YP_001450863.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157076393|gb|ABV11076.1| D-Alanyl-D-Alanine carboxypeptidase [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 460

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 131/297 (44%), Gaps = 42/297 (14%)

Query: 25  QRNIQLMGKILFLSIIMISMASEL-----HAKPKY-------SSIVIDVNKNQMTGFKQ- 71
           ++ I L+  +  L       A EL      A P         SS++ID N   +      
Sbjct: 3   KKWIALVCLVTLLFGAATVSADELMDITRKAYPDVKDINRPRSSLIIDGNTGDVLWQDNI 62

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYFT 127
           DE R PAS++K+MTLY++FE +   KL  +T I  S+T    A     S   +     +T
Sbjct: 63  DEVRDPASMSKLMTLYLLFEAMGQGKLSEDTIIKASQTDQNIAGIYEISNNKIVAGVDYT 122

Query: 128 TEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGLH--- 183
             + I   +  S+N  +     ++S ++   F   M++KAK++GM NT + NASG     
Sbjct: 123 ISELITMTVVPSSNATTVMIANYLSNNDPDAFLDQMNSKAKELGMTNTHWYNASGAAASS 182

Query: 184 ------------DKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITN 226
                       +    TTARD AIL     K +P   KY      +++K          
Sbjct: 183 FKGFYTPQRYDNNAANQTTARDLAILAYNFVKKYPGILKYTNKPVVTVKKGTPYEETFET 242

Query: 227 HNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           +N  +      +  +DG+KTG +    FN + +++  +  I++V+MG+    ++D +
Sbjct: 243 YNYSVPGAKYGLEGVDGLKTGSSPRGAFNYIATVKRGEQRIISVIMGVGDWSDQDGE 299


>gi|307130596|ref|YP_003882612.1| D-alanyl-D-alanine carboxypeptidase [Dickeya dadantii 3937]
 gi|306528125|gb|ADM98055.1| D-alanyl-D-alanine carboxypeptidase [Dickeya dadantii 3937]
          Length = 317

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 58/279 (20%), Positives = 115/279 (41%), Gaps = 32/279 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAA 111
           S++V+D+  N++      +   P AS+TK+MT  ++ +  Q     L+ +  + +S+T  
Sbjct: 45  SAMVVDLRNNEVLYSANPDVVVPIASVTKLMTAMVVLDANQP----LDERISVDISQT-K 99

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  +    +L  +  S N  + +      G  + F   M+ KA+ +GM
Sbjct: 100 EMKGVYSRVRLGSEISRHDMLLLALMSSENRAAASLAHHYRGGYQAFIAAMNAKARALGM 159

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT-- 225
            +T Y   +GL   N ++TARD   L ++  + +P   +  + ++    F   +  +   
Sbjct: 160 THTRYVEPTGLSTSN-VSTARDLTKL-LIASRQYPLLSQLSTTQEKNAVFTQPSYSLPFR 217

Query: 226 NHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V        P+  VV+           A  L 
Sbjct: 218 NTNHLIYRQDWNIQLTKTGFTNQAGHCLVMRTVINGRPVSLVVLDAFGKFTHFADANRLR 277

Query: 285 TS---------------FLEKKTLKHQQTHRKDNLSSTS 308
                            + ++K+L  +Q H  D  ++  
Sbjct: 278 NWLETGKVSPVPEAALSYKKQKSLASRQPHGADVTAAVD 316


>gi|321472931|gb|EFX83900.1| hypothetical protein DAPPUDRAFT_315307 [Daphnia pulex]
          Length = 285

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 104/222 (46%), Gaps = 13/222 (5%)

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +++      +    +  +I +S ND      E ++GSE+ F   M+ KAK++G  NT + 
Sbjct: 1   MFVPLGGTVSLSDLLQGIIVQSGNDACIVVTEGLAGSEENFVSQMNQKAKELGAINTHFL 60

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYK-YFSIRKFRYRNRIITNHNKLLNKMHN 236
           N++G  ++   +T RD  + GI   ++FP++YK Y+S  +F Y      N N LL     
Sbjct: 61  NSTGWPERGHTSTPRDLMLFGIRTIRDFPEFYKIYYSQLEFTYNGIRQNNRNPLLYNKLG 120

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF---LEKKTL 293
            DG+KTG+T   GF +  S +  D  ++ V+ G+   + R + A +++       E  TL
Sbjct: 121 -DGLKTGHTDEGGFGLAGSGQRGDRRLIFVINGLKNDKTRAETASKMLNYGMDSFEAITL 179

Query: 294 KHQQTHRKD--------NLSSTSLKKSLMIKKLKRTYSQFKK 327
             Q    ++        +  S    K ++I   +    Q KK
Sbjct: 180 YSQDAVVEEMPLSGASQSNISLVTIKPIIISVKRGYNDQIKK 221


>gi|330444090|ref|YP_004377076.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila pecorum E58]
 gi|328807200|gb|AEB41373.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila pecorum E58]
          Length = 429

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 64/325 (19%), Positives = 118/325 (36%), Gaps = 39/325 (12%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
           L+L        S    +   ++I+   +  ++   +  D   YPAS+TK+ T   I +  
Sbjct: 12  LWLCSSCFGAHSFPSTRGTSTAIL-HADTGKVLYGENLDLRIYPASMTKIATALFILQRH 70

Query: 94  QSKKLHLNTQIPVSKTAA--------------------TQNPSKLYLKEKTYFTTEQGIL 133
                 L   + V++ A                       +   + L+ K   +      
Sbjct: 71  PE---VLERLVTVTRDAIVSITPQAKKQSGYRNPPHWLETDGVTIQLQAKEEVSGWDLFH 127

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
           AL+  SAND +        GS  K    ++    ++G ++T + N  GLH  N  TTARD
Sbjct: 128 ALLLSSANDAANVLAVACCGSVAKCMEQINLFLSELGCKHTHFNNPHGLHHPNHYTTARD 187

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY------RNRIITNHNKL-----LNKMHNIDGIKT 242
            A +     +   ++ +      +          R +T  NKL     +       G KT
Sbjct: 188 LATIMHHALQE-TKFQQVIKTTHYTMAATNLSAERSLTTTNKLMLPRSMYYYPAALGGKT 246

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS-QERDQKALELITSFLEKKTLKHQQTHRK 301
           G T+++G N+V + +  +  I+ V  G      E  Q  + L  +   +  L+      K
Sbjct: 247 GTTKSAGKNLVMAAQKNNRKIITVTTGYSGPVGELYQDVIALCEALFHEPLLRKYLISPK 306

Query: 302 DNLS-STSLKKSLMIKKLKRTYSQF 325
           ++ +       ++ I   +  Y  F
Sbjct: 307 ESYTLKIKNLGNITIPLSEGVYYDF 331


>gi|304395773|ref|ZP_07377656.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pantoea sp.
           aB]
 gi|304357067|gb|EFM21431.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pantoea sp.
           aB]
          Length = 347

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 65/303 (21%), Positives = 127/303 (41%), Gaps = 33/303 (10%)

Query: 8   SSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELH---------AKPKY---S 55
              +  F+T  + ++  +    L+   L +S  ++S+ ++           A+P+    S
Sbjct: 19  GLTQYIFITGFFSTMPAKIRFTLLSLALLVSGQIVSLPAQATTTLSQLAPIAQPQIASGS 78

Query: 56  SIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++++D+  N++      D  R  AS+TK+MT  ++ +  Q     +N  IPV     +Q 
Sbjct: 79  AMIVDLTTNKVLFSSHPDRVRPIASITKLMTAMVVLDAHQP----MNEMIPVD---ISQT 131

Query: 115 PSKLYL----KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           P    +    K  +  +    +L  +  S N  + +      G    F   M+ KA+ +G
Sbjct: 132 PEMRGVFSRVKLNSQISRRNMMLLALMSSENRAAASLAHAYPGGYNAFIRAMNAKARSLG 191

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT- 225
           M+ T Y   +GL  +N +++A+D   L    R+ +P+     + ++    F + +  +  
Sbjct: 192 MKQTRYVEPTGLSTQN-VSSAQDLVKLLKATRE-YPELGALSTTKEETAVFAHPSYALPF 249

Query: 226 -NHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            N N L+ K    I   KTGYT  +G  +V      + P+  VV+           A  L
Sbjct: 250 RNTNHLVYKNDWHIQLTKTGYTDEAGHCLVMRTMINNRPVALVVLDAFGKYTHFADANRL 309

Query: 284 ITS 286
            + 
Sbjct: 310 RSW 312


>gi|82703413|ref|YP_412979.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrosospira
           multiformis ATCC 25196]
 gi|82411478|gb|ABB75587.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Nitrosospira multiformis ATCC 25196]
          Length = 278

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 67/280 (23%), Positives = 119/280 (42%), Gaps = 24/280 (8%)

Query: 31  MGKILFLSIIMISMASELHAKPK------YSSIVIDVNKNQMTGFKQDEPRYP-ASLTKM 83
           M   + +    ++      AKP        S++V+D  + Q+   K  +   P AS+TK+
Sbjct: 1   MKNAILVVCATLAFMGGAFAKPADLSLRSNSALVVDPQRGQVLFHKNADSVMPIASITKL 60

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSAND 142
           MT  ++ +     KL LN +I +          ++  L+  T FT  + +   +  S N 
Sbjct: 61  MTAMVVLDA----KLPLNQEIVIDSADVDVIKYTRSRLRVGTKFTRGELLRLALMSSENR 116

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL----- 197
            + A G    G    F   M+ KA ++GM +T + +++GL +   ++TARD A +     
Sbjct: 117 AAAALGRTYPGGLNAFVAAMNRKAFQLGMGSTYFVDSTGL-NSGNVSTARDLAKMVKAAH 175

Query: 198 GILLRKNF--PQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI-KTGYTRNSGFNIVT 254
           G  L + F     ++  S+ K R RN    N N+L+       GI KTG+   +G  +V 
Sbjct: 176 GYRLIRVFSTTAAHEVASMGKVRSRNLNYVNSNRLVRSSSWDIGISKTGFLSEAGRCLVM 235

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKA---LELITSFLEKK 291
                  P + V++       R   A    + + +   +K
Sbjct: 236 HANITGKPTIIVLLDSWGKNSRIGDANRIKKWLETGFTRK 275


>gi|227891443|ref|ZP_04009248.1| D-alanyl-D-alanine serine family carboxypeptidase [Lactobacillus
           salivarius ATCC 11741]
 gi|227866590|gb|EEJ74011.1| D-alanyl-D-alanine serine family carboxypeptidase [Lactobacillus
           salivarius ATCC 11741]
          Length = 384

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 71/351 (20%), Positives = 148/351 (42%), Gaps = 42/351 (11%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTL 86
           I +M  I  ++   I            ++ +ID    Q+   +  + +YP ASLTK++TL
Sbjct: 10  ILVMLGIAIITGSGIMRGVRADKIDAKAAYMIDAGTGQVLYQQNADSKYPIASLTKILTL 69

Query: 87  YIIFEYLQSKKLHLNTQIPV----SKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
            +I + + ++KL  + +I V    S  A     S + L E   +T +  + +++  SA+ 
Sbjct: 70  AVIMKDIHNQKLSWDQKIKVNKDVSDMANNWQYSNVQLNEGESYTVKSLVESMMIVSADG 129

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HDKNQI 188
            + A     +GS + F   M   A + G+ +    N  GL               D+   
Sbjct: 130 STEALALADAGSVQAFNEKMKEVAHEAGVTDAEIYNMIGLPNSDLGNLKLKNVGDDQENK 189

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NRIITNHNKLLNKMH------NI 237
            +A+D A++   L  N+P+       +   ++        + N N +L   +       I
Sbjct: 190 FSAKDIALVSKYLVNNYPEVIDITKQKNVDFKISADQTYNMENINYMLEGSYAAPKNGTI 249

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKH-- 295
           DG+KTG+T  +G+  V +  +    ++ V++      ++  +  ++I + +    + +  
Sbjct: 250 DGLKTGFTDEAGYCFVGTGTFNGQRVITVILNASDYNKQFAETNKMIETVMNNDKVVNTK 309

Query: 296 -----QQTHRKDNL----SSTSLKKSLMIKKLKRTYS-QFKKIDAKAHSTQ 336
                +Q  +K+NL    ++  + K+   K++K   +   +KI AK    +
Sbjct: 310 DIKSVKQALKKENLKVNDTNIWVTKNTDPKQIKAKLTLSNEKIKAKNAKNE 360


>gi|213609716|ref|ZP_03369542.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 267

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 12/203 (5%)

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND   A  +F +GS+  F  LM++    +G++NT ++   GL    Q ++ARD A+
Sbjct: 1   MQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMAL 60

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTS 255
           +G  L ++ P  Y  +  ++F +      N N LL     N+DGIKTG+T  +G+N+V S
Sbjct: 61  IGQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLVAS 120

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITS---FLEK-KTLKHQQTHRKD-------NL 304
                  +++ VMG  T + R+ ++ +L+T    F E    LK  +    +       + 
Sbjct: 121 ATEGQMRLISAVMGGRTYKGRETESKKLLTWGFRFFETVNPLKAGKEFASEPAWFGNTDR 180

Query: 305 SSTSLKKSLMIKKLKRTYSQFKK 327
           +S  + K + +   +      K 
Sbjct: 181 ASLGVDKDVYLTIPRGRMKDLKA 203


>gi|301299364|ref|ZP_07205646.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853035|gb|EFK80637.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 384

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 69/334 (20%), Positives = 135/334 (40%), Gaps = 34/334 (10%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTL 86
           I +M  I  ++   I    +       ++ +ID    Q+   +    +YP ASLTK++T+
Sbjct: 10  ILVMLGIAIITGSGIMRGVKADKIDAKAAYMIDAGTGQVLYQQNANSKYPIASLTKILTI 69

Query: 87  YIIFEYLQSKKLHLNTQIPV----SKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
            +I + + ++KL  + +I V    S  A     S + L E   +T +  + +++  SA+ 
Sbjct: 70  AVIMKDIHNQKLSWDQKIKVNKDVSDMANNWQYSNVQLNEGESYTVKSLVESMMIVSADG 129

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HDKNQI 188
            + A     +GS K F   M   A + G+ +    N  GL               D+   
Sbjct: 130 STEALALADAGSVKAFNEKMKEVAHEAGVTDAEIYNMIGLPNSDLGNLKLKNVGDDQENK 189

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NRIITNHNKLLNKMH------NI 237
            +A+D A++   L  N+P+       +   ++        + N N +L   +       I
Sbjct: 190 FSAKDIALISKYLVNNYPEVIDITKQKNVDFKISDDQTYNMENINYMLEGSYAAPKNGTI 249

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQ 297
           DG+KTG+T  +G+  V +  +    ++ V++     +++  +  ++I S +    +    
Sbjct: 250 DGLKTGFTDEAGYCFVGTGTFNGQRVITVILNASDYKKQFSETNKMIESVMNNDKV---- 305

Query: 298 THRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
            + KD  S     K   +K         K  D K
Sbjct: 306 VNTKDIKSVKQALKKENLKVNDTNIWVAKNTDPK 339


>gi|300782776|ref|YP_003763067.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei
           U32]
 gi|299792290|gb|ADJ42665.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei
           U32]
          Length = 414

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 62/274 (22%), Positives = 108/274 (39%), Gaps = 19/274 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S +V D++   +   K    R  PASL K +   ++       +L     I  +K  A
Sbjct: 96  AASWLVQDLDTGAVVAAKDPHARQRPASLIKTLLALVVV-----TQLDPQQTIVATKEDA 150

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            Q  + + L     +T +Q +  L+  S NDV+  F   + G +      M+  A KIG 
Sbjct: 151 EQECTCVGLVAGGQYTVDQLLHGLLMHSGNDVAHVFATALGGPDSA-VAKMNALAAKIGA 209

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN------RIIT 225
            +T     SGL      T+A D +++     K  P++ K  + + F +          I 
Sbjct: 210 LDTRAATPSGLDGPGMSTSAYDLSLIFNYAMKQ-PEFAKVVATKNFEFPPAGGKPAIPIF 268

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK-ALELI 284
           N NKLL       G KTG+T ++    V + + K   +  V++       +    A +L+
Sbjct: 269 NDNKLLGVYPGFLGGKTGFTDDARHTYVGAAQRKGKRLAVVMLRAEQKPTKVVDQAAKLL 328

Query: 285 TSFL----EKKTLKHQQTHRKDNLSSTSLKKSLM 314
                   ++     Q T+R    +  S   S++
Sbjct: 329 DYGFALEDDRAAPVGQITYRPPATTPASGDPSVL 362


>gi|295103732|emb|CBL01276.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 430

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 58/289 (20%), Positives = 111/289 (38%), Gaps = 29/289 (10%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSS------IVIDVNKNQ-MTGFKQDEPRYP 77
            R +  +   L +++  +     ++  P  ++       + + +  + +     D+ +Y 
Sbjct: 7   CRRLAALVLTLAVAVSAVLPVFAVYPMPVQTATETEAVYLFNADTGKTILSQNADQQKYV 66

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-------KTAATQNPSKLYLKEKTYFTTEQ 130
           ASLTK+MT  ++ E  +     LN ++ V        K     N + + L+         
Sbjct: 67  ASLTKLMTALLLVESGKD----LNGEVTVPTDLTQEFKDIQNANGTTMGLRIGETVRRID 122

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            + A++  SAND ++     + GS   F   M+ +A ++G   T +  A GL D   ++T
Sbjct: 123 LLNAMLIISANDAASVIAWDVGGSVVGFVQQMNARAAELGCTGTNFTCAHGLFDYGNVST 182

Query: 191 ARDQAILGILLRKN--FPQYYKYFS----IRKFRYRNRIITNHNKLLNKM-----HNIDG 239
           A+D A +     +N  F Q     S        R     I++ N L+N         +  
Sbjct: 183 AQDLAKIAAACAENQTFAQVAGTASYVLPATNLRKAEYTISSSNSLMNSESANYREYVKW 242

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +K G+T  +G  IV   +        V++G  T         +L     
Sbjct: 243 VKGGFTTLAGRCIVAFAQQDGHNYGLVILGCDTPDHLFTACDDLFDWAF 291


>gi|107028687|ref|YP_625782.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           cenocepacia AU 1054]
 gi|116690154|ref|YP_835777.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           cenocepacia HI2424]
 gi|170733486|ref|YP_001765433.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           cenocepacia MC0-3]
 gi|105897851|gb|ABF80809.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Burkholderia cenocepacia AU 1054]
 gi|116648243|gb|ABK08884.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Burkholderia cenocepacia HI2424]
 gi|169816728|gb|ACA91311.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           cenocepacia MC0-3]
          Length = 388

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 101/249 (40%), Gaps = 14/249 (5%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            +  A     + V+D N  +    K      P AS++K+MT  ++ +     K  +  Q+
Sbjct: 127 PDALALRSSVAYVVDQNSGEPLFDKNSHAVVPIASISKLMTAMVVLDA----KSPMTDQL 182

Query: 105 PVSKTAATQN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            V+         +   L   +  + E  +   +  S N  + A   +  G    F   M+
Sbjct: 183 EVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMN 242

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY---- 219
            KAK +GM +T ++N++GL   N +++ARD   +     + +P   ++ + R +      
Sbjct: 243 AKAKALGMTDTHFENSTGLSSSN-VSSARDLVKMVNAAYQ-YPMIRQFSTDRTYEVYTGK 300

Query: 220 RNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           RN +  + N L+  N   +I   KTG+   +G  +V        P+V V++       R 
Sbjct: 301 RNLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGRPMVMVLLDSFGKYSRF 360

Query: 278 QKALELITS 286
             A  L   
Sbjct: 361 ADASRLRNW 369


>gi|327468250|gb|EGF13735.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK330]
          Length = 422

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 140/348 (40%), Gaps = 47/348 (13%)

Query: 31  MGKILFLSIIMISMASELHAK-----PKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMM 84
           M ++    ++++ M +   A         S++ +D    ++   K    P    S+T ++
Sbjct: 1   MKRLFLCLLVLVGMTASKVAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLL 60

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           T+Y+++E +    L  +T + +S  A    +  N S + L+ K  +  +  I A +  S+
Sbjct: 61  TVYLVYEAIDRGDLTADTYVDISDYAYNLTSNPNISNVPLEAK-RYKVKDLIAASLMSSS 119

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------------- 183
           N  + A  E + GSE+ F  +M  K K+ G+++    N++GL+                 
Sbjct: 120 NSATIALAEKVGGSEENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYGTSA 179

Query: 184 -------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL----N 232
                  D     +A D A++   L  +FPQ  +  S    +     + N+N +L    N
Sbjct: 180 STAKKSKDAENKFSAYDLAVISRHLIMDFPQVTEITSKSTAKIAGTSLENYNFMLENQSN 239

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELIT--- 285
               +DG+K G +   G + V +       ++ VV+ +         R      L+    
Sbjct: 240 FRSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVLDVEQTDGDPYARFVATASLMNYVS 299

Query: 286 -SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
            +F +   +   + + K + +    K+  +     + ++  ++I  +A
Sbjct: 300 QNFTQTTIVAEGEAYNKSHSTVIDGKQKTVPAVASKDFTIIERIANQA 347


>gi|166033039|ref|ZP_02235868.1| hypothetical protein DORFOR_02761 [Dorea formicigenerans ATCC
           27755]
 gi|166027396|gb|EDR46153.1| hypothetical protein DORFOR_02761 [Dorea formicigenerans ATCC
           27755]
          Length = 490

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 68/277 (24%), Positives = 114/277 (41%), Gaps = 26/277 (9%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           + IV++V    +   K  D   YPAS+TK++T  +  E  Q     L   +  S  +   
Sbjct: 90  AGIVMEVGTGAILYAKNIDAHEYPASITKVLTALVALENGQ-----LTDNVTFSHDSVAF 144

Query: 113 --QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS----EKKFAILMSNKA 166
             +  S + LKE    T +Q + A++  SAN+ + A GE +  +       F   M+++ 
Sbjct: 145 LQRGDSSVGLKEGNVITLDQAMHAMLLASANEAAYAIGESVGVNAGHDYNWFIEQMNSRC 204

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------ 220
           K++G +N+ + N +GLHD N  T ARD A++G  L K  P++++      +         
Sbjct: 205 KELGGENSNFANTNGLHDPNHYTCARDMALIGRELFK-HPEFFQIVQTLNYTIPASETTE 263

Query: 221 NRIITNHNKLL-----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
             +    +K+L     N      G KTGYT ++   ++T        +V VV+       
Sbjct: 264 EHVFHQKHKMLQPSNSNYYPYTIGGKTGYTSDALSTLITMADNGQTQLVCVVLRTHGKNI 323

Query: 276 RDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
                  L        T     T  K     T L + 
Sbjct: 324 -YPDTTNLFEYAFNNFTKVDVTTQEKSEDIETFLTED 359


>gi|295105683|emb|CBL03227.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 290

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 99/241 (41%), Gaps = 23/241 (9%)

Query: 56  SIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKTA 110
           +I++D    ++   K  DE   PASLTKMMT+ +  E     +  L+ Q+     +    
Sbjct: 38  AILLDAQSGRVLAQKRADERTAPASLTKMMTVLLAIE----TEPDLDKQVTLPEDIFPAL 93

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            T+  S          T    +   +  S  +   A  + +SGSE+ FA LM+ KA ++G
Sbjct: 94  QTEKASMAGFVPDETVTVRDLLYGAMLPSGAECCEALAQLVSGSEENFAALMNQKAAELG 153

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN---- 226
           M+NT + NA+GL D    ++A D A L      N   +   F+   +             
Sbjct: 154 MKNTHFTNATGLTDTEHYSSAADMAKLLQAALHN-TTFRTIFTTEHYTTTATAQHPEGVS 212

Query: 227 -HNKLLNKMHN--------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
             + LL K+          I+G KTGYT  +G  + +         + V +  P     +
Sbjct: 213 LTSTLLGKLDGTELPTGTRIEGGKTGYTAAAGLCLASLATVNGKEYILVTLAAPGDHGTE 272

Query: 278 Q 278
           Q
Sbjct: 273 Q 273


>gi|18310958|ref|NP_562892.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens str.
           13]
 gi|168212989|ref|ZP_02638614.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens CPE str. F4969]
 gi|182624439|ref|ZP_02952223.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens D str. JGS1721]
 gi|18145640|dbj|BAB81682.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens str.
           13]
 gi|170715489|gb|EDT27671.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens CPE str. F4969]
 gi|177910442|gb|EDT72819.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens D str. JGS1721]
          Length = 423

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 74/335 (22%), Positives = 139/335 (41%), Gaps = 36/335 (10%)

Query: 24  IQRNIQLMGKILF-LSIIMISMASELHAKPKYS--------SIVIDVNKNQMTGFKQ-DE 73
           I+   +L+  IL  LS+ + +         + S        ++ +D +  ++   K  DE
Sbjct: 2   IKFKKKLLSSILIALSVSLFTPTKATVQAAEISQPNIVGKYAVTLDYDTGEIIYAKGIDE 61

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-----YLKEKTYFTT 128
             YPAS TK+MT  +  E+        N   P +  A  Q P  L      +        
Sbjct: 62  KAYPASTTKVMTSLLFAEHASK-----NDSFPYTADAKAQQPYTLNNSFGPIPVGEGMNA 116

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
              + AL+  SAND +    + ++GS +KF+++M+++ KK+G++NT +   +GLH+ +  
Sbjct: 117 NDLMKALLMFSANDAAAVIADGVAGSAEKFSVMMNDEVKKLGLKNTHFVTPNGLHNDDHY 176

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNRIITNHNKLLNKMHNIDGIKTGY 244
           +TA D A++     KN P   +  +++        +  ++ N NK L  +    G KTG+
Sbjct: 177 STAYDLAVILQNAYKN-PWVSETMALKDSDITVNGKKVLLENRNKELG-IDGNIGGKTGF 234

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKKTLKHQQTHRK 301
           T  +G  +V+        I+  V+      +         ++I        + + +    
Sbjct: 235 TTPAGRCLVSVYERNGRKIIGAVLNSQYDAKDEIVFNDMNKIIDYSYSVDKVPYIKAGTT 294

Query: 302 DNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
            +             KL R +   KKID    +T+
Sbjct: 295 IDTIPVEY-------KLFRWFGPTKKIDVPFVATE 322


>gi|253579420|ref|ZP_04856690.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849518|gb|EES77478.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 306

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 102/237 (43%), Gaps = 24/237 (10%)

Query: 56  SIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-- 112
           +I++     ++ G    +   YPAS+TK+MT+ +  E        L+ +I ++    +  
Sbjct: 46  AILMQARGGKILGEINGEAQIYPASMTKIMTVILGIENFDD----LDEKITLTNEMFSGL 101

Query: 113 --QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             Q+ ++   +          +   +  S  +   A  + ISGSE  FA LM+ KA+K+G
Sbjct: 102 YEQDATQAGFQPGEEVRVIDLLYGAMLPSGAECCIALADTISGSEADFAELMNKKARKLG 161

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKY----FSIRKFRYRNRII 224
           M+NT + +++GLH+ +  +T +D A+L     KN  F +  +       +          
Sbjct: 162 MENTHFCDSTGLHNPDHYSTVKDIAVLMKYCIKNDTFREIVETSRHSTGVTNIHPDGITY 221

Query: 225 TNHNKLLNKMHN-------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
            +   +   + +       I G KTGYT  +G  +V+    +    + V  G   + 
Sbjct: 222 YST--MFKNLSDPTVTGGKILGGKTGYTSEAGHCLVSFAEIEGREYIFVSAGASGAD 276


>gi|168215602|ref|ZP_02641227.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens NCTC 8239]
 gi|182382030|gb|EDT79509.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens NCTC 8239]
          Length = 423

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 74/335 (22%), Positives = 139/335 (41%), Gaps = 36/335 (10%)

Query: 24  IQRNIQLMGKILF-LSIIMISMASELHAKPKYS--------SIVIDVNKNQMTGFKQ-DE 73
           I+   +L+  IL  LS+ + +         + S        ++ +D +  ++   K  DE
Sbjct: 2   IKFKKKLLSSILIALSVSLFTPTKATVQAAEISQPNIVGKYAVTLDYDTGEIIYAKGIDE 61

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-----YLKEKTYFTT 128
             YPAS TK+MT  +  E+        N   P +  A  Q P  L      +        
Sbjct: 62  KAYPASTTKVMTSLLFAEHASK-----NDSFPYTADAKAQQPYTLNNSFGPIPVGEGMNA 116

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
              + AL+  SAND +    + ++GS +KF+++M+++ KK+G++NT +   +GLH+ +  
Sbjct: 117 NDLMKALLMFSANDAAAVIADGVAGSAEKFSVMMNDEVKKLGLKNTHFVTPNGLHNDDHY 176

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNRIITNHNKLLNKMHNIDGIKTGY 244
           +TA D A++     KN P   +  +++        +  ++ N NK L  +    G KTG+
Sbjct: 177 STAYDLAVILQNAYKN-PWVSETMALKDSDITVNGKKVLLENRNKELG-IDGNIGGKTGF 234

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKKTLKHQQTHRK 301
           T  +G  +V+        I+  V+      +         ++I        + + +    
Sbjct: 235 TTPAGRCLVSVYERNGRKIIGAVLNSQYDAKDEIVFNDMNKIIDYSYSVDKVPYIKAGTT 294

Query: 302 DNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
            +             KL R +   KKID    +T+
Sbjct: 295 IDTIPVEY-------KLFRWFGPTKKIDVPFVATE 322


>gi|307327153|ref|ZP_07606342.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           violaceusniger Tu 4113]
 gi|306887234|gb|EFN18231.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           violaceusniger Tu 4113]
          Length = 311

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 68/280 (24%), Positives = 110/280 (39%), Gaps = 27/280 (9%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           + A          + ++D   N+    K     R  AS TK+MT  ++ E   ++ L LN
Sbjct: 34  ASAEPPPEVSAQGAYLLDTGSNKELMAKDANTKRPMASTTKIMTALVVLE---TRGLDLN 90

Query: 102 TQIPVSK----TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-- 155
            Q+ V +           S   L+     T  Q + AL+  S  D + A  +     +  
Sbjct: 91  QQVTVKQEYRDYVTKAGASTADLQTGDKLTVNQLLYALMLPSGCDAAMALADTFGTGDTT 150

Query: 156 ----KKFAILMSNKAKKIGMQNTIYKNASG-LHDKNQITTARDQAILGILLRKN--FPQY 208
               K F   M+ KAK +G+ NT Y +  G   D +  +T RD A L      N  F   
Sbjct: 151 AERTKSFISKMNAKAKDLGLANTNYDSFDGVSADSDNYSTPRDVAQLTRRAMDNATFDTV 210

Query: 209 YKYFSIRK------FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
            K  S ++         R     N N+LL       G+KTG T  +G  +V + +  D  
Sbjct: 211 VKSVSTKQEAPAANGHTRYYSWDNTNQLLGSYQGAIGVKTGTTTPAGPCLVFAAKRGDKE 270

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKT-LKHQQTHRK 301
           +V VV+      +R   A +++    +  T +K +Q  + 
Sbjct: 271 VVGVVL---NDADRYPDAKKMLDWTYDTTTEVKWRQLPKG 307


>gi|168208677|ref|ZP_02634302.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens B str. ATCC 3626]
 gi|170713013|gb|EDT25195.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens B str. ATCC 3626]
          Length = 423

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 74/335 (22%), Positives = 139/335 (41%), Gaps = 36/335 (10%)

Query: 24  IQRNIQLMGKILF-LSIIMISMASELHAKPKYS--------SIVIDVNKNQMTGFKQ-DE 73
           I+   +L+  IL  LS+ + +         + S        ++ +D +  ++   K  DE
Sbjct: 2   IKFKKKLLSSILIALSVSLFTPTKATVQAAEISQPNIVGKYAVTLDYDTGEIIYAKGIDE 61

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-----YLKEKTYFTT 128
             YPAS TK+MT  +  E+        N   P +  A  Q P  L      +        
Sbjct: 62  KAYPASTTKVMTSLLFAEHASK-----NDSFPYTADAKAQQPYTLNNSFGPIPVGEGMNA 116

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
              + AL+  SAND +    + ++GS +KF+++M+++ KK+G++NT +   +GLH+ +  
Sbjct: 117 NDLMKALLMFSANDAAAVIADGLAGSAEKFSVMMNDEVKKLGLKNTHFVTPNGLHNDDHY 176

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNRIITNHNKLLNKMHNIDGIKTGY 244
           +TA D A++     KN P   +  +++        +  ++ N NK L  +    G KTG+
Sbjct: 177 STAYDLAVILQNAYKN-PWVSETMALKDSDITVNGKKVLLENRNKELG-IDGNIGGKTGF 234

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKKTLKHQQTHRK 301
           T  +G  +V+        I+  V+      +         ++I        + + +    
Sbjct: 235 TTPAGRCLVSVYERNGRKIIGAVLNSQYDAKDEIVFNDMNKIIDYSYSVDKVPYIKAGTT 294

Query: 302 DNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
            +             KL R +   KKID    +T+
Sbjct: 295 IDTIPVEY-------KLFRWFGPTKKIDVPFVATE 322


>gi|168204840|ref|ZP_02630845.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens E str. JGS1987]
 gi|170663667|gb|EDT16350.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens E str. JGS1987]
          Length = 423

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 74/335 (22%), Positives = 139/335 (41%), Gaps = 36/335 (10%)

Query: 24  IQRNIQLMGKILF-LSIIMISMASELHAKPKYS--------SIVIDVNKNQMTGFKQ-DE 73
           I+   +L+  IL  LS+ + +         + S        ++ +D +  ++   K  DE
Sbjct: 2   IKFKKKLLSSILIALSVSLFTPTKATVQAAEISQPNIVGKYAVTLDYDTGEIIYAKGIDE 61

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-----YLKEKTYFTT 128
             YPAS TK+MT  +  E+        N   P +  A  Q P  L      +        
Sbjct: 62  KAYPASTTKVMTSLLFAEHASK-----NDSFPYTADAKAQQPYTLNNSFGPIPVGEGMNA 116

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
              + AL+  SAND +    + ++GS +KF+++M+++ KK+G++NT +   +GLH+ +  
Sbjct: 117 NDLMKALLMFSANDAAAVIADGVAGSAEKFSVMMNDEVKKLGLKNTHFVTPNGLHNDDHY 176

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNRIITNHNKLLNKMHNIDGIKTGY 244
           +TA D A++     KN P   +  +++        +  ++ N NK L  +    G KTG+
Sbjct: 177 STAYDLAVILQNAYKN-PWVSETMALKDSDITVNGKKVLLENRNKELG-IDGNIGGKTGF 234

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKKTLKHQQTHRK 301
           T  +G  +V+        I+  V+      +         ++I        + + +    
Sbjct: 235 TTPAGRCLVSVYERNGRKIIGAVLNSQYDAKDEIVFNDMNKIIDYSYSVDKVPYIKAGTT 294

Query: 302 DNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
            +             KL R +   KKID    +T+
Sbjct: 295 IDTIPVEY-------KLFRWFGPTKKIDVPFVATE 322


>gi|110801081|ref|YP_696655.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens ATCC 13124]
 gi|110675728|gb|ABG84715.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens ATCC 13124]
          Length = 423

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 74/335 (22%), Positives = 139/335 (41%), Gaps = 36/335 (10%)

Query: 24  IQRNIQLMGKILF-LSIIMISMASELHAKPKYS--------SIVIDVNKNQMTGFKQ-DE 73
           I+   +L+  IL  LS+ + +         + S        ++ +D +  ++   K  DE
Sbjct: 2   IKFKKKLLSSILIALSVSLFTPTKATVQAAEISQPNIVGKYAVTLDYDTGEIIYAKGIDE 61

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-----YLKEKTYFTT 128
             YPAS TK+MT  +  E+        N   P +  A  Q P  L      +        
Sbjct: 62  KAYPASTTKVMTSLLFAEHASK-----NDSFPYTADAKAQQPYTLNNSFGPIPVGEGMNA 116

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
              + AL+  SAND +    + ++GS +KF+++M+++ KK+G++NT +   +GLH+ +  
Sbjct: 117 NDLMKALLMFSANDAAAVIADGLAGSAEKFSVMMNDEVKKLGLKNTHFVTPNGLHNDDHY 176

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNRIITNHNKLLNKMHNIDGIKTGY 244
           +TA D A++     KN P   +  +++        +  ++ N NK L  +    G KTG+
Sbjct: 177 STAYDLAVILQNAYKN-PWVSETMALKDSDITVNGKKVLLENRNKELG-IDGNIGGKTGF 234

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKKTLKHQQTHRK 301
           T  +G  +V+        I+  V+      +         ++I        + + +    
Sbjct: 235 TTPAGRCLVSVYERNGRKIIGAVLNSQYDAKDEIVFNDMNKIIDYSYSVDKVPYIKAGTT 294

Query: 302 DNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
            +             KL R +   KKID    +T+
Sbjct: 295 IDTIPVEY-------KLFRWFGPTKKIDVPFVATE 322


>gi|300902216|ref|ZP_07120216.1| Penicillin-binding protein 7 [Escherichia coli MS 84-1]
 gi|301305178|ref|ZP_07211277.1| Penicillin-binding protein 7 [Escherichia coli MS 124-1]
 gi|300405735|gb|EFJ89273.1| Penicillin-binding protein 7 [Escherichia coli MS 84-1]
 gi|300839582|gb|EFK67342.1| Penicillin-binding protein 7 [Escherichia coli MS 124-1]
 gi|315255353|gb|EFU35321.1| Penicillin-binding protein 7 [Escherichia coli MS 85-1]
          Length = 313

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 107/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAA 111
           S++++D+N N+       +  R  AS++K+MT  ++ +     +L L+ +  + +S+T  
Sbjct: 45  SAMIVDLNTNKAIYSNHPDLVRPIASISKLMTAMVVLDA----RLPLDEKLKVDISQTP- 99

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +      G  K F   M+ KAK +GM
Sbjct: 100 EMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGM 159

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIIT---- 225
            NT +   +GL   N ++TARD   L ++  K +P   +  + R+    + N   T    
Sbjct: 160 NNTRFVEPTGLSVHN-VSTARDLTKL-LIASKQYPLIGQLSTTREDMATFSNPTYTLPFR 217

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L 
Sbjct: 218 NTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLR 277

Query: 285 TS 286
           T 
Sbjct: 278 TW 279


>gi|90962503|ref|YP_536419.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           salivarius UCC118]
 gi|90821697|gb|ABE00336.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           salivarius UCC118]
          Length = 384

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 71/334 (21%), Positives = 134/334 (40%), Gaps = 34/334 (10%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTL 86
           I +M  I  ++   I    E       ++ +ID    Q+   +    +YP ASLTK++TL
Sbjct: 10  ILVMLGIAIITGSGIIRGVEADKIDAKAAYMIDAGTGQVLYQQNANSKYPIASLTKILTL 69

Query: 87  YIIFEYLQSKKLHLNTQIPV----SKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
            +I + + ++KL  N +I V    S  A     S + L E   +T +  + +++  SA+ 
Sbjct: 70  AVIMKDIHNQKLSWNQKIKVNKDVSDMANNWQYSNVQLNEGESYTVKSLVESMMIVSADG 129

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HDKNQI 188
            + A     +GS + F   M   A + G+ +    N  GL               D+   
Sbjct: 130 STEALALVDAGSVQAFNEKMKEVAHEAGVTDAEIYNMIGLPNSDLGNLKLKNVGDDQENK 189

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NRIITNHNKLLNKMH------NI 237
            +A+D A++   L  N+P+       +   ++        + N N +L   +       I
Sbjct: 190 FSAKDIALISKYLVNNYPEVIDITKQKNVDFKISADQTYNMENINYMLEGSYAAPKNGTI 249

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQ 297
           DG+KTG+T  +G+  V +  +    ++ V++      ++  +  ++I S +    +    
Sbjct: 250 DGLKTGFTDEAGYCFVGTGTFNGQRVITVILNASDYNKQFSETNKMIESVMNNDKV---- 305

Query: 298 THRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
            + KD  S     K   +K         K  D K
Sbjct: 306 VNTKDIKSVKQALKKEKLKVNDTNIWVTKNTDPK 339


>gi|78066908|ref|YP_369677.1| murein-DD-endopeptidase [Burkholderia sp. 383]
 gi|77967653|gb|ABB09033.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Burkholderia sp. 383]
          Length = 388

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 102/249 (40%), Gaps = 14/249 (5%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            +  A     + V+D N  +    K      P AS++K+MT  ++ +     K  +  QI
Sbjct: 127 PDALALRSSVAYVVDQNSGEPLFDKNSHAVVPIASISKLMTAMVVLDS----KTPMTDQI 182

Query: 105 PVSKTAATQN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            V+         +   L   +  + E  +   +  S N  + A   + +G    F   M+
Sbjct: 183 EVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYAGGRPAFIAAMN 242

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY---- 219
            KAK +GM +T ++N++GL   N +++ARD   +     + +P   ++ + R +      
Sbjct: 243 AKAKSLGMTDTHFENSTGLSSSN-VSSARDLVKMVNAAYQ-YPMIRQFSTDRTYEVYTGK 300

Query: 220 RNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           RN +  + N L+  N   +I   KTG+   +G  +V        P+V V++       R 
Sbjct: 301 RNLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGKPMVMVLLDSFGKYSRF 360

Query: 278 QKALELITS 286
             A  L   
Sbjct: 361 ADAARLRNW 369


>gi|225574473|ref|ZP_03783083.1| hypothetical protein RUMHYD_02548 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038323|gb|EEG48569.1| hypothetical protein RUMHYD_02548 [Blautia hydrogenotrophica DSM
           10507]
          Length = 409

 Score =  182 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 70/252 (27%), Positives = 116/252 (46%), Gaps = 23/252 (9%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT--AA 111
           ++++++ + N +   K  D   YP+S+TK+MT  I  E        L   + +++T  AA
Sbjct: 56  AAVIMEDSTNTILYAKNKDAALYPSSITKIMTTLIALE-----NSSLADTVTMTQTGTAA 110

Query: 112 TQNPS-KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           + N S  L  +    FT EQ + A++  SAND+ST   E + GS + F  +M+ KAK +G
Sbjct: 111 SGNGSVSLNAQVGETFTMEQCLYAIMLGSANDISTQIAEQVGGSVENFVTMMNQKAKDLG 170

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-------NRI 223
             NT + N +GL D+ Q +TA D A++     KN   +    S   +           R 
Sbjct: 171 CTNTNFTNPTGLPDEKQTSTAYDLALIMQAALKN-ESFQTIASAMTYTIPATNLTSAERN 229

Query: 224 ITNHNKL-----LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +TN+  L      +      G K+GYT  SG  +          ++ VV+   T Q+   
Sbjct: 230 LTNNFPLSTATSASYYEGTLGGKSGYTEASGSTLAAGASRNGTTLICVVL-SGTEQQVPP 288

Query: 279 KALELITSFLEK 290
           +A+ L+      
Sbjct: 289 EAITLLDYGFSN 300


>gi|291556702|emb|CBL33819.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum V10Sc8a]
          Length = 466

 Score =  182 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 71/361 (19%), Positives = 132/361 (36%), Gaps = 49/361 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP---------------KYSSIVIDVNKNQMTG 68
           +++ ++    +L  ++++ S++    A+                  +  +++ +   +  
Sbjct: 1   MKKILRFASALLCGAMLLCSLSVTAFAENDDEVYDFDPNTDKIYSEAVYMVNTDTGDVVF 60

Query: 69  FKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS------KTAATQNPSKLYLK 121
            K + +  YPAS TK+MT  I  E+L    L    ++P        +     +PS   ++
Sbjct: 61  KKNESKKMYPASTTKIMTCIIALEHLSEGALSKKVEVPYDCFNDFYEDPNYSDPSNAAIE 120

Query: 122 E-KTYFTTEQGILALITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNA 179
             +   T +  + AL+  SA + +      I G S  KF  +M+ KAK++G   T + NA
Sbjct: 121 PLQDNLTYKDCLYALMLPSACEAANILAYNIGGGSITKFIGMMNEKAKELGCTGTNFVNA 180

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-------NRIITNHNKLLN 232
            GLH+ N  TTA D   +       FP + K  S  ++             I +   LL 
Sbjct: 181 HGLHNDNNYTTAEDLYKMTKYAYDKFPLFKKITSTYEYEMPKNDANPSGYSIYSTISLLR 240

Query: 233 K-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP---------TSQERDQ 278
                      G KTG T  +G  +V++ +      + V +G P                
Sbjct: 241 PGSVYEYEYAYGTKTGTTDEAGRCLVSAAK-NQYNYILVTLGAPVKDKNGEYYDDWYSMI 299

Query: 279 KALELITSF---LEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
            AL L        E  T+ ++     +         + +I   +  Y+       K    
Sbjct: 300 DALNLYKWAFTNFEMATVVNKDEQITEVKVEMGESATHVILTPESDYTALMPKSVKESGV 359

Query: 336 Q 336
           Q
Sbjct: 360 Q 360


>gi|291548692|emb|CBL24954.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus torques L2-14]
          Length = 478

 Score =  182 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 70/312 (22%), Positives = 133/312 (42%), Gaps = 29/312 (9%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            +  A    S+IV+D+N   +   KQ ++  YPAS+TK++T  +  +  +     L   +
Sbjct: 70  PQGPATYADSAIVMDMNSGAVLYSKQIEKKHYPASITKLLTTLVALDNAE-----LTDTV 124

Query: 105 PVSKTAAT---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG----EFISGSEKK 157
             S+ + +      + + +      + E  + A++  SAN+VS A      + + G    
Sbjct: 125 EFSQDSISFLEYGDAHIGMTPGEQISMEDALYAVLLASANEVSYAVAESVGKKMGGGYDT 184

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL--RKNFPQYYKYFS-- 213
           F   M+++++K+G   + + NA+GLHD+   TTA D A +G  +  ++ F    +  S  
Sbjct: 185 FIQAMNDESEKLGCTGSHWTNANGLHDEQHYTTAHDMARIGAAVYQKEAFRTISQSLSHT 244

Query: 214 --IRKFRYRNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
             +       R     +K+L            G KTGYT  +   +VT     D  +VAV
Sbjct: 245 IPVTNLVNEERTFQQKHKMLWPQNDNYYEYCKGGKTGYTDQARTTLVTMADNGDMQLVAV 304

Query: 267 VM--GMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
           V+      +    +   +   S   K +LK Q+    + + S   + + ++      +S 
Sbjct: 305 VLYDFGNDAYIDTRAMFDYAYSNFSKISLKDQKLP--EGVKSYEDEDAYIVLPKSAQFSD 362

Query: 325 FKKIDAKAHSTQ 336
             K + K  S +
Sbjct: 363 V-KAEVKEDSNK 373


>gi|251790099|ref|YP_003004820.1| D-alanyl-D-alanine endopeptidase [Dickeya zeae Ech1591]
 gi|247538720|gb|ACT07341.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Dickeya zeae
           Ech1591]
          Length = 319

 Score =  182 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 15/255 (5%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLH 99
           +   A         S++V+D+  N +      +   P AS+TK+MT  ++ +  Q     
Sbjct: 31  VTQPAPSRQEIASGSAMVVDLRNNDVLYSSNPDVVVPIASVTKLMTAMVVLDANQPLDER 90

Query: 100 LNTQIPVSKTAATQN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
           L+  + +S+T   Q   S++ L   +  +    +L  +  S N  + +      G  + F
Sbjct: 91  LS--VDISQTKEMQGVYSRVRL--GSEISRHDMLLLALMSSENRAAASLAHHYRGGYQAF 146

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-- 216
              M+ KAK +GM +T Y   +GL   N ++TARD   L ++  K +P   +  +  +  
Sbjct: 147 IAAMNAKAKALGMTHTRYVEPTGLSTSN-VSTARDLTKL-LIASKQYPLLGQLSTSHEKT 204

Query: 217 --FRYRNRIIT--NHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
             F   +  +   N N L+ +   NI   KTG+T  +G  +V        P+  VV+   
Sbjct: 205 AVFTQPSYSLPFRNTNHLIYRQDWNIQLTKTGFTNQAGHCLVMRTVINGRPVSLVVLDAF 264

Query: 272 TSQERDQKALELITS 286
                   A  L   
Sbjct: 265 GKFTHFADANRLRNW 279


>gi|332284463|ref|YP_004416374.1| putative penicillin-binding protein precursor [Pusillimonas sp.
           T7-7]
 gi|330428416|gb|AEC19750.1| putative penicillin-binding protein precursor [Pusillimonas sp.
           T7-7]
          Length = 355

 Score =  182 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 106/244 (43%), Gaps = 15/244 (6%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ- 113
           + V D++   +   K  DE R  AS++K+MT  ++ E      L ++  + +S     + 
Sbjct: 113 AFVQDLDSLDVLYDKNGDEVRPIASISKLMTALVVAEAG----LAMDEMLTISDADVDRL 168

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+  L   T  +    +   +  S N  + A G +  G    F   M++KA+ +GM+N
Sbjct: 169 RYSRSRLPVGTELSRADMLHLALMSSENRAAHALGRYYPGGMPAFVRAMNDKARALGMRN 228

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-----RYRNRIITNHN 228
           T +   +GL   + ++T+RD   L           ++Y +  K+     R R  +  N N
Sbjct: 229 TRFVEPTGLS-SDNVSTSRDLVKLLRAT-TEHKLIHRYTTDDKYKVTVGRGRQLVYNNTN 286

Query: 229 KLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           +L+     +I   KTG+   +G  +V   R     +  V++   T+  R   A+ L T  
Sbjct: 287 RLVGNSKWDIKVSKTGFINEAGECLVMLTRIDQRDVAIVLLNS-TNHSRIGDAVRLRTLL 345

Query: 288 LEKK 291
           +E +
Sbjct: 346 VENE 349


>gi|309782592|ref|ZP_07677315.1| D-alanyl-D-alanine carboxypeptidase family protein [Ralstonia sp.
           5_7_47FAA]
 gi|308918683|gb|EFP64357.1| D-alanyl-D-alanine carboxypeptidase family protein [Ralstonia sp.
           5_7_47FAA]
          Length = 396

 Score =  182 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 105/252 (41%), Gaps = 17/252 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNT 102
              +  A     ++V+D N  ++   K      P AS+TK+MT  ++ +  Q     ++ 
Sbjct: 116 ATPDALALRSSVALVMDQNNGEVLFQKNSSAVLPIASITKLMTALVVTDAHQP----MDE 171

Query: 103 QIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            + ++           S+  L+  T  T E  +L  +  S N  ++A G    G    F 
Sbjct: 172 LLEITDEDRDYERNTGSR--LRFGTMLTREDLLLLALMSSENRAASALGRNYPGGRPAFV 229

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             M+ KA+++GM +T Y +++GL   N +++A+D A + +   K  P   ++ +  +   
Sbjct: 230 AAMNRKARELGMNDTHYVDSNGLSSSN-VSSAQDLAKIVMAAYK-VPLIRQFTTTPEHTV 287

Query: 220 --RNRIIT--NHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
               R +   N N+L+       G+ KTG+   +G  +V         +V V +    + 
Sbjct: 288 SANGRTLHYVNTNRLVRGGEWDIGLQKTGFINEAGRCLVMQANVHGRNVVMVFLDSAGNL 347

Query: 275 ERDQKALELITS 286
            R   A  +   
Sbjct: 348 TRFADATRVRNW 359


>gi|323694553|ref|ZP_08108719.1| hypothetical protein HMPREF9475_03583 [Clostridium symbiosum
           WAL-14673]
 gi|323501321|gb|EGB17217.1| hypothetical protein HMPREF9475_03583 [Clostridium symbiosum
           WAL-14673]
          Length = 353

 Score =  182 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 97/221 (43%), Gaps = 25/221 (11%)

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAAT---QNPSKLYLKEKTYFTTEQGILALITRSA 140
           MT  ++ E     +  L+  +  S+ A T        L +K    F+ +  + AL+ +SA
Sbjct: 1   MTALLVLE-----RSSLDDTVTFSENAVTNLEAGAVTLKIKAGDKFSVKDCMYALLLKSA 55

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           N+V+    E ++GS   FA LM+ KA  +G  NT + N +GL+D N  TTARD A++   
Sbjct: 56  NEVANGLAEHVAGSVSGFADLMNQKAASLGCTNTHFVNPNGLNDSNHYTTARDMALIAKA 115

Query: 201 LRKN-------------FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRN 247
             +N             FP      ++RK    ++++   N        I G KTGYT  
Sbjct: 116 AFENQTLSQIASTVSYDFPATASVPTVRKLTMGHKMVNPANG--EYYQGIVGGKTGYTSL 173

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +G  +VT        ++AVV+   + Q        L+    
Sbjct: 174 AGNTLVTCAERDGKRLIAVVL--KSKQTHYTDTKALLDYGF 212


>gi|83745865|ref|ZP_00942922.1| D-alanyl-D-alanine-endopeptidase [Ralstonia solanacearum UW551]
 gi|207742996|ref|YP_002259388.1| d-alanyl-d-alanine-endopeptidase (penicillin-binding protein)
           [Ralstonia solanacearum IPO1609]
 gi|83727555|gb|EAP74676.1| D-alanyl-D-alanine-endopeptidase [Ralstonia solanacearum UW551]
 gi|206594393|emb|CAQ61320.1| d-alanyl-d-alanine-endopeptidase (penicillin-binding protein)
           [Ralstonia solanacearum IPO1609]
          Length = 392

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 63/315 (20%), Positives = 125/315 (39%), Gaps = 24/315 (7%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKP------KYSSIVIDVNKNQMTGFKQDEPR 75
           I ++R  + M      +   +  A  L A P         ++V+D     +   K     
Sbjct: 84  ILVERGARPMRAAFVPAAPTLGEAMGLRATPDALALRSSVALVMDQGSGDVLFQKNASAV 143

Query: 76  YP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQG 131
            P AS+TK+MT  ++ +  Q     ++  + +++          S+  L+  T  T E  
Sbjct: 144 LPIASITKLMTALVVTDAHQP----MDELLEITEDDRDYERNTGSR--LRYGTMLTREDL 197

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +L  +  S N  ++A G    G    F   M+ KA ++GM +T Y +++GL   N +++A
Sbjct: 198 LLLALMSSENRAASALGRSYPGGRPAFVAAMNRKAHELGMNDTHYVDSNGLSSSN-VSSA 256

Query: 192 RDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIIT--NHNKLLNKMHNIDGI-KTGYTR 246
            D + + +   K  P   ++ +  +       R +   N N+L+       G+ KTG+  
Sbjct: 257 MDLSKIVMAAYK-VPLIRQFTTTAEHAVNANGRTLHYVNTNRLVRGGEWEIGLQKTGFIN 315

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSS 306
            +G  +V         +V V +    +  R   A+ +    LE+       T     L +
Sbjct: 316 EAGRCLVMQANVHGRNVVMVFLDSAGNLTRFADAVRVRNW-LERSPHVEAPTQAATPLRN 374

Query: 307 TSLKKSLMIKKLKRT 321
             + +   +   ++T
Sbjct: 375 VPVSQPATVLASEQT 389


>gi|261212871|ref|ZP_05927155.1| murein-DD-endopeptidase [Vibrio sp. RC341]
 gi|260837936|gb|EEX64613.1| murein-DD-endopeptidase [Vibrio sp. RC341]
          Length = 300

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 105/244 (43%), Gaps = 15/244 (6%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KT 109
              S++VID+  N++      D  +  AS+TK+MT  +  +     KL ++ ++P++ K 
Sbjct: 30  AANSALVIDLKTNEVIYSSNPDAVKPIASVTKLMTAMVTLDA----KLPMDAKLPITIKE 85

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           A         ++  +  + ++ +L  +  S N  + +      G  K F   M+ KAK +
Sbjct: 86  AKEMKGVHSRVRIGSEISRKEMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKAL 145

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------NRI 223
           GM+NT +   +GL  +  +++ARD  +L     K +P   +  S  K             
Sbjct: 146 GMKNTRFVEPTGLS-EQNVSSARDLVLLLKA-SKKYPMLGQLSSTDKKTVTFAKPRYTLD 203

Query: 224 ITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
             N N+L++  +  ID  KTG+T  +G  +V   +     +  VV+           A  
Sbjct: 204 FRNTNRLVHNDNWRIDLTKTGFTNAAGHCLVMRTQMGKRQVAFVVLDTKGKLSPAGDATR 263

Query: 283 LITS 286
           L T 
Sbjct: 264 LRTW 267


>gi|254556248|ref|YP_003062665.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           JDM1]
 gi|300768351|ref|ZP_07078254.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|254045175|gb|ACT61968.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           JDM1]
 gi|300494078|gb|EFK29243.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 412

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 114/262 (43%), Gaps = 28/262 (10%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQS 95
           LS  + + A+   A    ++ V+D    Q+   +  D+    ASL+K+MTLY++   ++ 
Sbjct: 23  LSCNVAAHATSSKADEVKAAYVMDAKSGQVVYAQNADQKLPIASLSKLMTLYLVERAIEH 82

Query: 96  KKLHLNTQIPVSKT----AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            ++     +P+ K     A +   S + +  K  FT  +   A +  S+N  + A GE++
Sbjct: 83  GQIKWTDAVPIRKNVRKMATSATLSVMPMPAKETFTVRELFAATLVGSSNSGAIALGEYV 142

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN----------------QITTARDQA 195
           +GS  KF  LM+ +A K  + +  + +ASGL + +                 + +AR   
Sbjct: 143 AGSNDKFIKLMNQQASKWHL-DASFISASGLDNTDLKNYDLKIKGTSDQDQNLVSARAVT 201

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN------IDGIKTGYTRNSG 249
            +   L   +P   +  + R  +     +    ++L           +DG+KTGYT  +G
Sbjct: 202 TIAQHLIDAYPDVIQVANQRSVKIHKYTVPTSVEILKGAEYYDPRVPVDGLKTGYTNQAG 261

Query: 250 FNIVTSLRYKDDPIVAVVMGMP 271
             +V + R     ++A  +G  
Sbjct: 262 ACLVATYRQNGHRMIATTLGGA 283


>gi|167751174|ref|ZP_02423301.1| hypothetical protein EUBSIR_02160 [Eubacterium siraeum DSM 15702]
 gi|167655889|gb|EDS00019.1| hypothetical protein EUBSIR_02160 [Eubacterium siraeum DSM 15702]
          Length = 466

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 71/361 (19%), Positives = 132/361 (36%), Gaps = 49/361 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP---------------KYSSIVIDVNKNQMTG 68
           +++ ++    +L  ++++ S++    A+                  +  +++ +   +  
Sbjct: 1   MKKILRFASALLCGAMLLCSLSVTAFAENDDEVYDFDPNTDKIYSEAVYMVNTDTGDVVF 60

Query: 69  FKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS------KTAATQNPSKLYLK 121
            K + +  YPAS TK+MT  I  E+L    L    ++P        +     +PS   ++
Sbjct: 61  KKNESKKMYPASTTKIMTCIIALEHLSEGALSKKVEVPYDCFNDFYEDPNYSDPSNAAIE 120

Query: 122 E-KTYFTTEQGILALITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNA 179
             +   T +  + AL+  SA + +      I G S  KF  +M+ KAK++G   T + NA
Sbjct: 121 PLQDNLTYKDCLYALMLPSACEAANILAYNIGGGSITKFIGMMNEKAKELGCTGTNFVNA 180

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-------NRIITNHNKLLN 232
            GLH+ N  TTA D   +       FP + K  S  ++             I +   LL 
Sbjct: 181 HGLHNDNNYTTAEDLYKMTKYAYDKFPLFKKITSTYEYEMPKNDANPSGYSIYSTISLLR 240

Query: 233 K-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP---------TSQERDQ 278
                      G KTG T  +G  +V++ +      + V +G P                
Sbjct: 241 PGSVYEYEYAYGTKTGTTDEAGRCLVSAAK-NQYNYILVTLGAPVKDKNGEYYDDWYSMI 299

Query: 279 KALELITSF---LEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
            AL L        E  T+ ++     +         + +I   +  Y+       K    
Sbjct: 300 DALNLYKWAFTNFEMTTVVNKDEQITEVKVEMGESATHVILTPESDYTALMPKSVKESGV 359

Query: 336 Q 336
           Q
Sbjct: 360 Q 360


>gi|17546328|ref|NP_519730.1| D-alanyl-D-alanine-endopeptidase (penicillin-binding protein)
           [Ralstonia solanacearum GMI1000]
 gi|17428625|emb|CAD15311.1| putative d-alanyl-d-alanine-endopeptidase (penicillin-binding
           protein) [Ralstonia solanacearum GMI1000]
          Length = 375

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 56/294 (19%), Positives = 119/294 (40%), Gaps = 18/294 (6%)

Query: 2   LQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDV 61
           +++ +    K+  +    G+  ++         L  ++ + +    L  +    ++V+D 
Sbjct: 52  IRKVVTVRGKRHVILVERGARPMRAAYVPAAPTLGEAMGLRATPDALALRSSV-ALVMDQ 110

Query: 62  NKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT---QNPSK 117
               +   K      P AS+TK+MT  ++ +  Q     ++  + +++          S+
Sbjct: 111 GSGDVLFQKNASAVLPIASITKLMTALVVTDAHQP----MDELLEITEDDRDFERNTGSR 166

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
             L+  T  T E  +L  +  S N  ++A G    G    F   M+ KA ++GM +T Y 
Sbjct: 167 --LRYGTMLTREDLLLLALMSSENRAASALGRSYPGGRPAFVAAMNRKAHELGMTDTHYV 224

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY--RNRIIT--NHNKLLNK 233
           +++GL   N +++A D A + +   K  P   ++ +  +       R +   N N+L+  
Sbjct: 225 DSNGLSSSN-VSSAMDLAKIVMAAYK-VPLIRQFTTTAEHTVNANGRTLHYVNTNRLVRG 282

Query: 234 MHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
                G+ KTG+   +G  +V         +V V +    +  R   A+ +   
Sbjct: 283 GEWDIGLQKTGFINEAGRCLVMQANVHGRNVVMVFLDSAGNLTRFADAVRVRNW 336


>gi|325688308|gb|EGD30327.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK72]
          Length = 455

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 132/301 (43%), Gaps = 45/301 (14%)

Query: 24  IQRNIQLMGKILFLSIIMISM-ASELHAKPKY--------------SSIVIDVNKNQMTG 68
           +++ + L+G +   S+  ++  A EL    K               SS+VID +   +  
Sbjct: 5   VKKKLLLLGVVFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPKSSLVIDGSTGDVVW 64

Query: 69  FKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEK 123
               DE R PAS++K+MTLY++FE ++  K+   T I  +     TA     S   +   
Sbjct: 65  EDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQATANIYEISNNKIVAG 124

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGL 182
             +T  + I   I  S+N  +     ++S ++   F   M+ KA+++GM NT + NASG 
Sbjct: 125 VDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGA 184

Query: 183 HD---------------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NR 222
                             +  TTARD AIL      + P+   Y +  K   +       
Sbjct: 185 AAVSFKGYYNPQNYDNYASNQTTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGTPYEE 244

Query: 223 IITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
               +N  L      +  +DG+KTG + N  FN + +++  D  ++AV+MG+    ++D 
Sbjct: 245 TFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDWSDQDG 304

Query: 279 K 279
           +
Sbjct: 305 E 305


>gi|323486924|ref|ZP_08092240.1| hypothetical protein HMPREF9474_03991 [Clostridium symbiosum
           WAL-14163]
 gi|323691972|ref|ZP_08106221.1| hypothetical protein HMPREF9475_01084 [Clostridium symbiosum
           WAL-14673]
 gi|323399787|gb|EGA92169.1| hypothetical protein HMPREF9474_03991 [Clostridium symbiosum
           WAL-14163]
 gi|323503981|gb|EGB19794.1| hypothetical protein HMPREF9475_01084 [Clostridium symbiosum
           WAL-14673]
          Length = 321

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 56/239 (23%), Positives = 98/239 (41%), Gaps = 25/239 (10%)

Query: 66  MTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA--TQNPSKLYLKE 122
           +   K   E  YPAS TK+MT  I  E       +L+ Q+ V++ A       S   +K 
Sbjct: 85  VVYSKNAFERLYPASTTKVMTAIIALEEG-----NLSDQVTVTEDAVITEAGASLCGIKP 139

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
               T +  +  L+  S ND + A    + GS   FA  M+ +A+++G   T + N SGL
Sbjct: 140 GDVITMQDLLYGLMMPSGNDAANAIAVHMYGSIDAFADRMNVRARELGATGTHFMNPSGL 199

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR---------NRIITNHNKLLNK 233
            D+N  TTA D  ++     K  P + +  +   +            ++  T  N     
Sbjct: 200 TDENHYTTAYDLYLMFNEAMK-LPLFREIIAEDSYTANYQNGAGEAVSKTWTVGNWYQKG 258

Query: 234 MHN------IDGIKTGYTRNSGFNIVTSLRY-KDDPIVAVVMGMPTSQERDQKALELIT 285
                    + G KTG T+ +G+ ++ +    +D   ++VV+   +          +I+
Sbjct: 259 ERETPAGVSVLGGKTGTTQAAGYCLIMASNDSQDKEYISVVLKSDSRPSLYDNMTNIIS 317


>gi|121594143|ref|YP_986039.1| murein-DD-endopeptidase [Acidovorax sp. JS42]
 gi|120606223|gb|ABM41963.1| murein-DD-endopeptidase [Acidovorax sp. JS42]
          Length = 360

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 98/242 (40%), Gaps = 21/242 (8%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++VID +  ++   K D    P ASLTK+MT  ++ E      L ++  I +++      
Sbjct: 111 ALVIDQDTKEVLLSKNDHAVLPIASLTKLMTGLLVSEAH----LPMDELITITQDDVDTE 166

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   L   T  +  + +   +  S N  + A G    G    F   M+ KAK +GM +
Sbjct: 167 KGSGSRLAVGTTLSRGELLHLALMSSENRAAHALGRTFPGGLDTFVARMNAKAKLLGMAD 226

Query: 174 TIYKNASGLHDKNQITTARDQAIL------GILLRK--NFPQYYKYFSIRKFRYRNRIIT 225
           T +   +GL  +NQ ++A D A L        LLR+    P +      R  +Y      
Sbjct: 227 TRFVEPTGLSSRNQ-SSAHDLATLVNVAHGDALLRELSTSPSHEVAVGRRTLQYN----- 280

Query: 226 NHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N+L+     +I   KTGY   +G  +V         ++ V +       R   A  + 
Sbjct: 281 NTNRLVKSPSWDIGLQKTGYISEAGRCLVMQAEVAGRKLIMVFLDSAGKFSRLGDAERVR 340

Query: 285 TS 286
           + 
Sbjct: 341 SW 342


>gi|257125213|ref|YP_003163327.1| serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia buccalis
           C-1013-b]
 gi|257049152|gb|ACV38336.1| Serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia buccalis
           C-1013-b]
          Length = 485

 Score =  182 bits (462), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 63/271 (23%), Positives = 118/271 (43%), Gaps = 15/271 (5%)

Query: 64  NQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKE 122
            ++   K    ++P ASLTK+M + +  + +      ++ ++  +        S L  K 
Sbjct: 145 GKILKDKMSRQQHPIASLTKVMNILVALDQIDRGNAKIDDKVCFTPDTVNMGGSWLNAKA 204

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASG 181
              +T +  + A I  SAN+ +    + I  G+   F  LM+ KAK++GM +T Y   +G
Sbjct: 205 GDCYTLKDLLRAEIIYSANNAAYMVAKHIGKGNLDNFVKLMNQKAKELGMNDTHYYTPAG 264

Query: 182 LHDKNQ-----ITTARDQAILGILLRKNFP----QYYKYFSIRKFRYRNRIITNHNKLLN 232
           L           +TA D  +LG    ++             ++     + I  N N LLN
Sbjct: 265 LPTSMTNKGMDTSTAYDMYLLGRRAIRDERLKAWMKESELVLQNSEGEDVIYNNRNHLLN 324

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           K   I G+KTG+   +G+N++ S +  +  I++V +G  +   R +   +  T  LEK+ 
Sbjct: 325 KF-GIYGLKTGFHVQAGYNMIVSSKIGNLEIISVTLGNKSDDARTKDQTQEFTQ-LEKRM 382

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYS 323
           +   +  ++  + +    K    KK+    S
Sbjct: 383 IPVYKAGQE--IGNKFRIKGTKEKKIAGVLS 411


>gi|319942241|ref|ZP_08016556.1| hypothetical protein HMPREF9464_01775 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804114|gb|EFW01014.1| hypothetical protein HMPREF9464_01775 [Sutterella wadsworthensis
           3_1_45B]
          Length = 372

 Score =  182 bits (462), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 12/234 (5%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +  +D +  +    K  D     AS+TK+MT  +I E      + L+ ++ +++    ++
Sbjct: 122 AYAMDQDTGEELVVKNADVELPIASVTKLMTALVIAES----DVDLDEKVRITREDYVRS 177

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            +   L      T E  + A +  S N  + A      G  K F   M+ +A  IGM N+
Sbjct: 178 TAHSKLISGMRLTRESLLKAALMSSDNRAAAALARTYPGGRKAFVAKMNERAAAIGMTNS 237

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITN---HNKL 230
            + + +GL ++N  +TARD   L +       +     +    R    R   N    N+L
Sbjct: 238 FFADPTGLDNRNH-STARDLGKL-VAAVYQHQEIRDASTTSMARISTGRRQVNLATTNRL 295

Query: 231 LNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           +       GI KTG+T  +G  +V      +  +V VV+  P + +R      +
Sbjct: 296 IGDPSWRIGIQKTGFTTAAGRCMVVQSDVGERRLVMVVLDSPNNAQRADDMRTM 349


>gi|161502683|ref|YP_001569795.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864030|gb|ABX20653.1| hypothetical protein SARI_00730 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 315

 Score =  182 bits (462), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 107/242 (44%), Gaps = 17/242 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNT--QIPVSKTAA 111
           S++++D+N +++      +  R  AS+TK+MT  ++ +     +L L+   ++ +S+T  
Sbjct: 42  SAMIVDLNTHKVIYSNHPDLVRPIASITKLMTAMVVLDA----RLPLDEILKVDISQTP- 96

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  + +  +L  +  S N  + +   +  G    F   M+ KAK +GM
Sbjct: 97  EMKGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGM 156

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT-- 225
            +T +   +GL   N ++TARD   L ++  K +P   +    R+    F +    +   
Sbjct: 157 THTRFVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSITREDMATFSHPAYTLPFR 214

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L 
Sbjct: 215 NTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLR 274

Query: 285 TS 286
           T 
Sbjct: 275 TW 276


>gi|77414953|ref|ZP_00791048.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
           agalactiae 515]
 gi|77158997|gb|EAO70213.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
           agalactiae 515]
          Length = 369

 Score =  182 bits (462), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 123/294 (41%), Gaps = 32/294 (10%)

Query: 68  GFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKE 122
             K    P   ASLTK+MT+Y++++ + +  L  NT++ +S          + S + L++
Sbjct: 2   YEKDANRPAAIASLTKIMTVYMVYKEIDNGNLKWNTKVNISDYPYQLTRESDASNVPLEK 61

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
           +  +T +Q + A +  SAN  + A  E ISG+E KF   M+ + +K G+ ++   NASGL
Sbjct: 62  R-RYTVKQLVDAAMISSANSAAIALAEHISGTESKFVDKMTAQLEKWGIHDSHLVNASGL 120

Query: 183 HD--------------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           ++                   +ARD AI+   L   +P   K  S    ++   I+ ++N
Sbjct: 121 NNSMLGNHIYPKSSQNDENKMSARDIAIVAYHLVNEYPSILKITSKSVAKFDKDIMHSYN 180

Query: 229 KLLNKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM----PTSQERDQKA 280
            +L  M      I G+KTG T  +G + + +       ++ V+M           R    
Sbjct: 181 YMLPDMPVFRPGITGLKTGTTELAGQSFIATSTESGMRLLTVIMHADKADKDKYARFTAT 240

Query: 281 LELITSFLEKK----TLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
             L+            L    T++    S    K+  +I   K      +K + 
Sbjct: 241 NSLLNYITNTYEPNLVLAKGATYKGKEASVRDGKEQSVIAVAKNDLKVAQKKNI 294


>gi|206560567|ref|YP_002231332.1| D-alanyl-D-alanine endopeptidase [Burkholderia cenocepacia J2315]
 gi|198036609|emb|CAR52506.1| D-alanyl-D-alanine endopeptidase (penicillin-binding protein
           precursor) [Burkholderia cenocepacia J2315]
          Length = 388

 Score =  182 bits (462), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 101/249 (40%), Gaps = 14/249 (5%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            +  A     + V+D N  +    K      P AS++K+MT  ++ +     K  +  Q+
Sbjct: 127 PDALALRSSVAYVVDQNSGEPLFDKNSHAVVPIASISKLMTAMVVLDS----KSPMTDQL 182

Query: 105 PVSKTAATQN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            V+         +   L   +  + E  +   +  S N  + A   +  G    F   M+
Sbjct: 183 EVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMN 242

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY---- 219
            KAK +GM +T ++N++GL   N +++ARD   +     + +P   ++ + R +      
Sbjct: 243 AKAKSLGMTDTHFENSTGLSSSN-VSSARDLVKMVNAAYQ-YPMIRQFSTDRTYEVYTGK 300

Query: 220 RNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           RN +  + N L+  N   +I   KTG+   +G  +V        P+V V++       R 
Sbjct: 301 RNLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGRPMVMVLLDSFGKYSRF 360

Query: 278 QKALELITS 286
             A  L   
Sbjct: 361 ADASRLRNW 369


>gi|116332941|ref|YP_794468.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367]
 gi|116098288|gb|ABJ63437.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367]
          Length = 423

 Score =  182 bits (462), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 129/295 (43%), Gaps = 30/295 (10%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHL 100
            +    +      ++ V+D    Q+   +    +YP ASL+K++T+Y+  + +   ++  
Sbjct: 29  AAATKTVSKVAARAAYVMDAQSGQVLYQQNANKKYPIASLSKLLTVYLTVKAINDGQIKW 88

Query: 101 NTQIPVSKT----AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
              +P+S+     + +   S L +K+   FT  Q + A +  S+N  +TA GE+++GS  
Sbjct: 89  TDNVPMSQDLLKLSHSYTYSSLRMKKGESFTVRQLVAAAMIASSNSAATALGEYVAGSNA 148

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHD----------------KNQITTARDQAILGIL 200
           KF  LM+ +++  G+ +  + ++SGL +                +  + +A+   ++   
Sbjct: 149 KFIQLMNQQSRDWGI-DAHFISSSGLDNTDLKDYHLVLAGTGKKEENLVSAKAITVVAQH 207

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVT 254
           L    P      S  +       I N N  L       K  +IDG+KTGYT N+      
Sbjct: 208 LLAADPTITAVASKTQATINGTKIYNENSCLPGKSQYKKASHIDGLKTGYTENAKLCFTA 267

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELI--TSFLEKKTLKHQQTHRKDNLSST 307
           +       ++A ++G  T+     K ++ +  +  LE   L  +Q    + L++T
Sbjct: 268 TYTVNGQRMIATILGGDTTFSAMNKLIKQLKQSYRLETTALTSRQIQLGNGLATT 322


>gi|325689091|gb|EGD31099.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK115]
          Length = 422

 Score =  182 bits (462), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 66/348 (18%), Positives = 141/348 (40%), Gaps = 47/348 (13%)

Query: 31  MGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQDE-PRYPASLTKMM 84
           M ++    ++++ + +   A   Y     S++ +D    ++   K    P    S+T ++
Sbjct: 1   MKRLFLCFLVLVGLTASKVAADDYNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLL 60

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           T+Y+++E +    L  +T + +S  A    +  N S + L+ K  +  +  I A +  SA
Sbjct: 61  TVYLVYEAIDRGDLTADTYVDISDYAYNLTSNPNISNVPLEAK-RYKVKDLIAASLMSSA 119

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------------- 183
           N  + A  E + GSE+ F  +M  K K+ G+++    N++GL+                 
Sbjct: 120 NSATIALAEKVGGSEENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETDYTASA 179

Query: 184 -------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL----N 232
                  D     +A D A++   L  +FPQ  +  S    +     + N+N +L    N
Sbjct: 180 STAKKSKDTENKFSAYDLAVISRHLIMDFPQVTEITSKSTAKIAGTSLENYNFMLENQSN 239

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELIT--- 285
               +DG+K G +   G + V +       ++ VV+ +         R      L+    
Sbjct: 240 FRSGVDGLKAGSSEKGGSSFVATTTENGIRMITVVLDVEQTDGDPYARFVATASLMNYVS 299

Query: 286 -SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
            +F +   +   + + K + +    K+  +     + ++  ++I  +A
Sbjct: 300 QNFTQTTIVAEGEAYNKSHSTVIDGKQKAVPAVASKDFTIIERIANQA 347


>gi|318059553|ref|ZP_07978276.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SA3_actG]
 gi|318080461|ref|ZP_07987793.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SA3_actF]
          Length = 315

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 104/265 (39%), Gaps = 26/265 (9%)

Query: 44  MASELHAKPKYSSIVIDVNKN----QMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +A  + A+    + ++D        ++    K DE    AS TK+MT  ++ ++ +  + 
Sbjct: 55  VAPAIKAEH---AFLLDARDGSQERELWAGAKADESVPMASTTKIMTAIVVLKHPEWLER 111

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE--- 155
            +  +            S   L+     T  Q + A++  S  D + A  +     +   
Sbjct: 112 QITVKQEYRDYVQEVGASTADLQTGDTLTARQLLHAMLIPSGADAARALADTFGNGDTEE 171

Query: 156 ---KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
                F   M+ +A+++G++ T + +  G+   N  +TARD A LG       P + +  
Sbjct: 172 ARISDFIAQMNAEAQQLGLKGTHFDSVDGISQGNNHSTARDLAKLGQRAMLQ-PVFAEVV 230

Query: 213 SIRKFR---------YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
              +++          R     N N+LL       G+KTG     G+ +V +    +  +
Sbjct: 231 KNTQYKTEAPAANGHTRYYTWNNTNELLGTYDGALGVKTGSGPEDGYCVVFAAERDNRTL 290

Query: 264 VAVVMGMPTSQERDQKALELITSFL 288
           V V++G  T   R   A +++    
Sbjct: 291 VGVILGDDTG--RFDDATKVLDWGF 313


>gi|333022589|ref|ZP_08450653.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces sp.
           Tu6071]
 gi|332742441|gb|EGJ72882.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces sp.
           Tu6071]
          Length = 315

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 55/266 (20%), Positives = 103/266 (38%), Gaps = 31/266 (11%)

Query: 47  ELHAKPKYSSIVIDVNKN----QMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
              A     + ++D        ++    K DE    AS TK+MT  ++ ++ +     L+
Sbjct: 55  AAPAIKAEHAFLLDARDGSQERELWAGAKADESVPMASTTKIMTAIVVLKHPEW----LD 110

Query: 102 TQIPVSK----TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-- 155
            QI V +           S   L+     T  Q + A++  S  D + A  +     +  
Sbjct: 111 RQITVKQEYRDYVQEVGASTADLQTGDTLTARQLLHAMLIPSGADAARALADTFGNGDTE 170

Query: 156 ----KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
                 F   M+ +A+++G++ T + +  G+   N  +TARD A LG       P + + 
Sbjct: 171 EARITDFIAQMNAEAQQLGLKGTHFDSVDGISQGNNHSTARDLAKLGQRAMLQ-PVFAEV 229

Query: 212 FSIRKFR---------YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
               +++          R     N N+LL       G+KTG     G+ +V +    +  
Sbjct: 230 VKNTQYKTEAPAANGHTRYYTWNNTNELLGTYDGALGVKTGSGPEDGYCVVFAAERDNRT 289

Query: 263 IVAVVMGMPTSQERDQKALELITSFL 288
           +V V++G  T   R   A +++    
Sbjct: 290 LVGVILGDDTG--RFDDATKVLDWGF 313


>gi|315505734|ref|YP_004084621.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Micromonospora
           sp. L5]
 gi|315412353|gb|ADU10470.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Micromonospora
           sp. L5]
          Length = 428

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 101/261 (38%), Gaps = 12/261 (4%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQS 95
             +++   +    A    + +V D++  ++ G      P  PAS  K++    +   L  
Sbjct: 79  AGLVVPPGSPAPPAVTATTWLVADLDTGEVLGACGAHVPGTPASTQKLLLAATMLSRLDP 138

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
           K + + T+  +         S + L     ++ E   L L+ +S ND +       +GS 
Sbjct: 139 KHVAVATRADLD---IEPGSSAVGLLVGGRYSVETLWLGLLLQSGNDAANMLARLGAGSA 195

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF-------PQY 208
           +     M+ +A+++G   T     SGL    Q T+A D A++      +         + 
Sbjct: 196 QAGVAEMNEQARRLGAGQTHAVTPSGLDGPGQFTSAYDLALIARACFADAAFRRYALTER 255

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            +  +    +     I N N+L+ +     G KTG+T  +  + V + +     +V  ++
Sbjct: 256 TQIPAQPALKKGGFQIQNENQLIYRYPGALGGKTGFTELARHSYVGAAQRDGRRLVVTLL 315

Query: 269 GMPTSQER-DQKALELITSFL 288
           G      R  Q+  +L+    
Sbjct: 316 GAEARPVRGWQQGAQLLDWAF 336


>gi|302867864|ref|YP_003836501.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Micromonospora
           aurantiaca ATCC 27029]
 gi|302570723|gb|ADL46925.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Micromonospora
           aurantiaca ATCC 27029]
          Length = 427

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 101/261 (38%), Gaps = 12/261 (4%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQS 95
             +++   +    A    + +V D++  ++ G      P  PAS  K++    +   L  
Sbjct: 78  AGLVVPPGSPAPPAVTATTWLVADLDTGEVLGACGAHVPGTPASTQKLLLAATMLSRLDP 137

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
           K + + T+  +         S + L     ++ E   L L+ +S ND +       +GS 
Sbjct: 138 KHVAVATRADLD---IEPGSSAVGLLVGGRYSVETLWLGLLLQSGNDAANMLARLGAGSA 194

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF-------PQY 208
           +     M+ +A+++G   T     SGL    Q T+A D A++      +         + 
Sbjct: 195 QAGVAEMNEQARRLGAGQTHAVTPSGLDGPGQFTSAYDLALIARACFADAAFRRYALTER 254

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            +  +    +     I N N+L+ +     G KTG+T  +  + V + +     +V  ++
Sbjct: 255 TQIPAQPALKKGGFQIQNENQLIYRYPGALGGKTGFTELARHSYVGAAQRDGRRLVVTLL 314

Query: 269 GMPTSQER-DQKALELITSFL 288
           G      R  Q+  +L+    
Sbjct: 315 GAEARPVRGWQQGAQLLDWAF 335


>gi|296158343|ref|ZP_06841174.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. Ch1-1]
 gi|295891287|gb|EFG71074.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. Ch1-1]
          Length = 415

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 100/240 (41%), Gaps = 17/240 (7%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + VID N  +    K      P AS+TK+MT  ++ +     K  +  QI V+       
Sbjct: 164 AYVIDQNSGEPLFDKNSRAVVPIASITKLMTAMVVLDS----KEPMTDQIEVTDEDRDYE 219

Query: 115 ---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S+  L   +  + E  +   +  S N  + A   +  G    F   M+ KA+++GM
Sbjct: 220 KNTGSR--LSVGSVLSREDMLHIALMASENRAAAALSRYFPGGRPAFLAAMNAKARQLGM 277

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNH 227
            +T ++N +GL  +N +++ARD   +     + +P   ++ +   +      R+    + 
Sbjct: 278 TDTHFENPTGLTSQN-VSSARDLVKMVNAAYQ-YPLIRRFSTDHSYEVYTGKRSLAYNST 335

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           N L+ N   +I   KTG+   +G  +V        P++ V++       R   A  L T 
Sbjct: 336 NALVRNPTWDIGLQKTGFINEAGECLVMQATIHGRPMIMVLLDSSGKYSRFADATRLRTW 395


>gi|302867861|ref|YP_003836498.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Micromonospora
           aurantiaca ATCC 27029]
 gi|302570720|gb|ADL46922.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Micromonospora
           aurantiaca ATCC 27029]
          Length = 426

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 99/266 (37%), Gaps = 16/266 (6%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQS 95
             +++   +S   A    S +V D++   + G         PAS+ K++    +   L  
Sbjct: 72  AGLVVPPASSAPPAVTATSWVVADLDSGAVLGGCGPHEYGVPASVQKLLLAATMLPRLDP 131

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE--FISG 153
            +      +     A     S + L E   +  E   L L+ RS N+ + A         
Sbjct: 132 HR---EVTVTAGDLAVEPGSSAVGLVEGGRYQIETIWLGLLLRSGNEAANALARLGGGPD 188

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
                   M+ +A ++G + T     SGL    Q T+A D A++      + P + +Y +
Sbjct: 189 GLAGGVRAMNEEAHRLGARQTHAVTPSGLDGPGQFTSAYDLALIARACFAD-PAFRRYAA 247

Query: 214 IR--------KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            R          R +   I+N N LL+      G KTG+T  +    V +       +V 
Sbjct: 248 TRIAQIPAQPAQRAKGFAISNDNMLLDHYPGALGGKTGFTDLARHTYVGAAERGGRRLVV 307

Query: 266 VVMGMPTSQER-DQKALELITSFLEK 290
            ++G   + +R  Q+   L+     +
Sbjct: 308 TLLGAEVTTQRGWQQGAALLDWGFAQ 333


>gi|315659824|ref|ZP_07912683.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Staphylococcus lugdunensis M23590]
 gi|315495112|gb|EFU83448.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Staphylococcus lugdunensis M23590]
          Length = 411

 Score =  181 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 70/341 (20%), Positives = 142/341 (41%), Gaps = 41/341 (12%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---------------IVIDVNKNQMTG-F 69
           R I+    +L L ++   + +     P   +               +++   + Q+   +
Sbjct: 2   RQIKGFVLLLCLCMMFSPLTTYAAKTPTQIAEAEKQHIAQHYNPKSMIVTTQQGQILYDY 61

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKLYLKEKTY 125
            Q +   PAS+TK+MT+Y++ + +   K+ L  ++ VS   A        +   L +   
Sbjct: 62  HQHDNVDPASITKLMTIYLVLDDIDKGKIKLTDEVKVSGRYAKMSRIPGLTTFPLIKGKT 121

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD- 184
           +T +Q +      S+N       E I G+   F   M+ KA+ + M++T + N SG  + 
Sbjct: 122 YTIQQLLKQGALASSNAAMLVLAEHIDGNSSDFTHRMNRKAQALHMRHTHFNNPSGADNR 181

Query: 185 ------KNQI-------TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
                  +Q        TTA+D A+L   L K  P+  K   +   +    ++ N N  L
Sbjct: 182 LIKPFAPSQYKQQHFSKTTAKDMAVLTQQLVKQHPKVLKITRLTSDKQHGHMLKNTNLSL 241

Query: 232 ----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM-PTSQERDQKALELITS 286
               + +   DG+KTG T N G+N+  + +  +  I +V+  + P + ER +   + +++
Sbjct: 242 PAQADGLAGADGLKTG-TSNHGYNLALTAKQNNLRIHSVLFQVQPFADERAKHVRQQLSN 300

Query: 287 FLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
            + ++  K+    +  +     ++  +   K K  Y    K
Sbjct: 301 IMVRRAFKNYDYRKVLSKGQHRIQGKMYYVK-KDLYDVVPK 340


>gi|302547465|ref|ZP_07299807.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302465083|gb|EFL28176.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces
           himastatinicus ATCC 53653]
          Length = 311

 Score =  181 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 58/268 (21%), Positives = 104/268 (38%), Gaps = 25/268 (9%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           + E        + ++D    +    K  D  R  AS TK+M   ++ E   +K + L+ Q
Sbjct: 35  SPEPPEVSAKGAYLLDTGSGEELMAKGADTKRPIASTTKIMAALVVLE---TKNVDLDKQ 91

Query: 104 IPVSK----TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE---- 155
           + V +           S   L+     T  Q +  ++  S  D + A  +     +    
Sbjct: 92  VTVKEDYRDYVTKSEASTADLQTGDKLTVNQLLYGMMLPSGCDAAMALADTFGTGDTVAE 151

Query: 156 --KKFAILMSNKAKKIGMQNTIYKNASG-LHDKNQITTARDQAILGILLRKN--FPQYYK 210
             K F   M+ KA+ +G+ NT Y +  G        +T R+ A L     KN  F +  K
Sbjct: 152 RTKSFVSKMNAKAEDLGLTNTHYDSFDGVSASSGNYSTPREVAELTQRAMKNATFQKVVK 211

Query: 211 YFSIRK------FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
             S ++       R R     N N++L       G+KTG T  +G  +V + +     +V
Sbjct: 212 SVSTKQEAPAANGRTRYYSWDNTNRILGSYKGAVGVKTGTTTPAGPCLVFAAKRDGRTVV 271

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKT 292
            V++    + +R   A +++    +  T
Sbjct: 272 GVILN--DAADRYPDAQKMLDFAYDADT 297


>gi|254247777|ref|ZP_04941098.1| Peptidase S11 [Burkholderia cenocepacia PC184]
 gi|124872553|gb|EAY64269.1| Peptidase S11 [Burkholderia cenocepacia PC184]
          Length = 388

 Score =  181 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 101/249 (40%), Gaps = 14/249 (5%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            +  A     + V+D N  +    K      P AS++K+MT  ++ +     K  +  Q+
Sbjct: 127 PDALALRSSVAYVVDQNSGEPLFDKNSHAVVPIASISKLMTAMVVLDA----KSPMTDQL 182

Query: 105 PVSKTAATQN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            V+         +   L   +  + E  +   +  S N  + A   +  G    F   M+
Sbjct: 183 EVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMN 242

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY---- 219
            KAK +GM +T ++N++GL   N +++ARD   +     + +P   ++ + R +      
Sbjct: 243 AKAKALGMTDTHFENSTGLSSSN-VSSARDLVKMVNAAYQ-YPMIRQFSTDRTYEVYTGK 300

Query: 220 RNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           RN +  + N L+  N   +I   KTG+   +G  +V        P+V V++       R 
Sbjct: 301 RNLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGRPMVMVLLDSFGKYSRF 360

Query: 278 QKALELITS 286
             A  L   
Sbjct: 361 ADASRLRNW 369


>gi|325694037|gb|EGD35955.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK150]
          Length = 455

 Score =  181 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 132/301 (43%), Gaps = 45/301 (14%)

Query: 24  IQRNIQLMGKILFLSIIMISM-ASELHAKPKY--------------SSIVIDVNKNQMTG 68
           +++ + L+G +   S+  ++  A EL    K               SS+VID +   +  
Sbjct: 5   VKKKLLLLGIVFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPKSSLVIDGSTGDVVW 64

Query: 69  FKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEK 123
               DE R PAS++K+MTLY++FE ++  K+   T I  +     TA     S   +   
Sbjct: 65  EDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQATANIYEISNNKIVAG 124

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGL 182
             +T  + I   I  S+N  +     ++S ++   F   M+ KA+++GM NT + NASG 
Sbjct: 125 VDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGA 184

Query: 183 HD---------------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NR 222
                             +  TTARD AIL      + P+   Y +  K   +       
Sbjct: 185 AAVSFKGYYNPQNYDNYASNQTTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGTPYEE 244

Query: 223 IITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
               +N  L      +  +DG+KTG + N  FN + +++  D  ++AV+MG+    ++D 
Sbjct: 245 TFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDWSDQDG 304

Query: 279 K 279
           +
Sbjct: 305 E 305


>gi|269127199|ref|YP_003300569.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Thermomonospora curvata DSM 43183]
 gi|268312157|gb|ACY98531.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Thermomonospora curvata DSM 43183]
          Length = 305

 Score =  181 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 112/283 (39%), Gaps = 24/283 (8%)

Query: 28  IQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKM 83
           + L+G  L +S+     A+           S+++ +  K ++   +     R   S+TK 
Sbjct: 11  VPLVGATLLISVPAAPAAAAGAGPSGVKARSALLYEPAKRKIRWHRAGGTKRPIGSITKA 70

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           MT  ++    +     L+ +I + +     A     S  +L+     T  Q + AL+  S
Sbjct: 71  MTAVVVLRSGK-----LDRKITIKQKHINYAVRHGGSMAHLRPGDKLTARQLLRALLLPS 125

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN---QITTARDQAI 196
             D +    +      + F   M+  A+ + M+ T Y N  GL         +TA DQ  
Sbjct: 126 GCDAAYVLADAYGPGWRNFVKKMNATARALNMKKTHYANFDGLPWPTPTAGYSTALDQTK 185

Query: 197 LGILLRKNFPQYYKYFSIRKFR------YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           L     K  P++ K    R +R      +R     N N+LL     ++G+KTGYT  +G+
Sbjct: 186 LANYAFKKLPEFRKIVRTRTYRLKAGGGHRAYTWHNTNRLLGSFKGVNGVKTGYTSAAGY 245

Query: 251 NIVTSLRYKDDPIVAVVMGMPT--SQERDQKALELITSFLEKK 291
           +++ +       ++  V+   T  S  R   A  +++      
Sbjct: 246 SLLFAATRGKRTLIGAVLNSSTTDSTARFTDAARILSWGFGTA 288


>gi|313847624|emb|CBY16612.1| putative D-alanyl-d-alanine carboxypeptidase [Chlamydophila
           psittaci RD1]
          Length = 433

 Score =  181 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 63/311 (20%), Positives = 114/311 (36%), Gaps = 41/311 (13%)

Query: 35  LFLSIIMISMASELHAKPKYSSIV-----------IDVNKNQMTGFKQ-DEPRYPASLTK 82
           +F    ++     L   P Y  IV           +     ++   K  D+  YPAS+TK
Sbjct: 4   VFFRFALLPFLVGLFTHPLYGHIVFPETRGNAVAVVHAETGKVLYAKDIDKRIYPASMTK 63

Query: 83  MMTLYIIFEYLQSKK-----LHLNTQIPVSKTAATQ------------NPSKLYLKEKTY 125
           + T   I +           +  +    ++  A  Q            +   + L+ K  
Sbjct: 64  IATALFILKKHPDVLNRFIIVKPDAIASITPQAKKQSGYRSPPHWLETDGVTIQLQNKEE 123

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            +      AL+  SAND + A     SGS  +F   +++  ++IG  +T + N  GLH  
Sbjct: 124 VSGWDLFHALLICSANDAANALAIACSGSVVEFMKQLNDFLREIGCAHTHFNNPHGLHHP 183

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLL-----NKM 234
           N  TTA D   +     K  P + +      ++       + RI+   NKL+        
Sbjct: 184 NHYTTAGDLTRIMREGLKE-PLFRQVIRTTNYKMAPTNLSQERILNLTNKLILPGSTYYY 242

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
               G KTG T+++G N+V + +     I+ +  G     E  +  + L      ++ L+
Sbjct: 243 PPALGGKTGTTKDAGKNLVFAAKKHGRSIITIAAGYSVMSELYEDVIALCEGVFNEQPLR 302

Query: 295 HQQTHRKDNLS 305
                  +  +
Sbjct: 303 RYLIPPTEKYT 313


>gi|300857885|ref|YP_003782868.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685339|gb|ADK28261.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302330165|gb|ADL20359.1| putative peptidoglycan synthesis related protein [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275848|gb|ADO25747.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
           pseudotuberculosis I19]
          Length = 404

 Score =  181 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 59/281 (20%), Positives = 108/281 (38%), Gaps = 15/281 (5%)

Query: 49  HAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVS 107
            A    + +V D++   +   K    RY PAS+ K +   +  +     +L+L  ++ ++
Sbjct: 89  PANTASAWMVFDLDNGDVIATKDPHGRYRPASVIKALLALVALD-----ELNLKAKVKIT 143

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
              A Q  S +   +   +T EQ +  L+  S ND + A  + + G  K     ++  A 
Sbjct: 144 AEDANQEGSAVGYVDGVEYTNEQLLYGLLLNSGNDAAHALAQRLGGDNKT-LEKVNALAH 202

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN------ 221
            +G  +T   + SGL      T+A D A++     KN P + K  +              
Sbjct: 203 SLGTVDTYAASYSGLDAPGMSTSAHDLALIYSHAWKN-PTFAKMVATEHIELPGNAATPT 261

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-DQKA 280
             + N N L     +  G KTGYT ++    V +       + AV++     Q R  Q+A
Sbjct: 262 FQVWNDNGLFLNDEHGIGGKTGYTDDAHHTFVGAKNIDGRRLAAVILDTTVEQGRPWQQA 321

Query: 281 LELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRT 321
            +LI +       +     ++ ++ S      L        
Sbjct: 322 QKLIDAAYAVPRGEKVGNLKETSIPSQPSPSELPTPPTPEE 362


>gi|302523506|ref|ZP_07275848.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB78]
 gi|302432401|gb|EFL04217.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB78]
          Length = 315

 Score =  181 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 100/262 (38%), Gaps = 23/262 (8%)

Query: 47  ELHAKPKYSSIVIDVNKN----QMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
              A     + ++D        ++    K DE    AS TK+MT  ++ ++ +  +  + 
Sbjct: 55  AAPAIKAEHAFLLDARDGSQERELWAGAKADESVPMASTTKIMTAIVVLKHPEWLERQIT 114

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE------ 155
            +            S   L+     T  Q + A++  S  D + A  +     +      
Sbjct: 115 VKQEYRDYVQEVGASTADLQTGDTLTARQLLHAMLIPSGADAARALADTFGNGDTEEARI 174

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             F   M+ +A+++G++ T + +  G+   N  +TARD A LG       P + +     
Sbjct: 175 SDFIAQMNAEAQQLGLKGTHFDSVDGISQGNNHSTARDLAKLGQRAMLQ-PVFAEVVKNT 233

Query: 216 KFR---------YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           +++          R     N N+LL       G+KTG     G+ +V +    +  +V V
Sbjct: 234 QYKTEAPAANGHTRYYTWNNTNELLGTYDGALGVKTGSGPEDGYCVVFAAERDNRTLVGV 293

Query: 267 VMGMPTSQERDQKALELITSFL 288
           ++G  T   R   A +++    
Sbjct: 294 ILGDDTG--RFDDATKVLDWGF 313


>gi|222111139|ref|YP_002553403.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Acidovorax
           ebreus TPSY]
 gi|221730583|gb|ACM33403.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidovorax
           ebreus TPSY]
          Length = 360

 Score =  181 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 98/242 (40%), Gaps = 21/242 (8%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++VID +  ++   K D    P ASLTK+MT  ++ E      L ++  I +++      
Sbjct: 111 ALVIDQDTKEVLLSKNDHAVLPIASLTKLMTGLLVSEAH----LPMDELITITQDDVDTE 166

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   L   T  +  + +   +  S N  + A G    G    F   M+ KAK +GM +
Sbjct: 167 KGSGSRLAVGTTLSRGELLHLALMSSENRAAHALGRTFPGGLDTFVARMNAKAKLLGMAD 226

Query: 174 TIYKNASGLHDKNQITTARDQAIL------GILLRK--NFPQYYKYFSIRKFRYRNRIIT 225
           T +   +GL  +NQ ++A D A L        LLR+    P +      R  +Y      
Sbjct: 227 TRFVEPTGLSSRNQ-SSAHDLATLVNVAHGDALLRELSTSPSHEVAIGRRTLQYN----- 280

Query: 226 NHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N+L+     +I   KTGY   +G  +V         ++ V +       R   A  + 
Sbjct: 281 NTNRLVKSPSWDIGLQKTGYISEAGRCLVMQAEVAGRKLIMVFLDSAGKFSRLGDAERVR 340

Query: 285 TS 286
           + 
Sbjct: 341 SW 342


>gi|241663205|ref|YP_002981565.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ralstonia
           pickettii 12D]
 gi|240865232|gb|ACS62893.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ralstonia
           pickettii 12D]
          Length = 379

 Score =  181 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 105/252 (41%), Gaps = 17/252 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNT 102
              +  A     ++V+D N  ++   K      P AS+TK+MT  ++ +  Q     ++ 
Sbjct: 99  ATPDALALRSSVALVMDQNNGEVLFQKNSSAVLPIASITKLMTALVVTDAHQP----MDE 154

Query: 103 QIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            + ++           S+  L+  T  T E  +L  +  S N  ++A G    G    F 
Sbjct: 155 LLEITDEDRDYERNTGSR--LRFGTMLTREDLLLLALMSSENRAASALGRNYPGGRPAFV 212

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             M+ KA+++GM +T Y +++GL   N +++A+D A + +   K  P   ++ +  +   
Sbjct: 213 AAMNRKARELGMNDTHYVDSNGLSSSN-VSSAQDLAKIVMAAYK-VPLIRQFTTTPEHTV 270

Query: 220 --RNRIIT--NHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
               R +   N N+L+       G+ KTG+   +G  +V         +V V +    + 
Sbjct: 271 SANGRTLHYVNTNRLVRGGEWDIGLQKTGFINEAGRCLVMQANVHGRNVVMVFLDSAGNL 330

Query: 275 ERDQKALELITS 286
            R   A  +   
Sbjct: 331 TRFADATRVRNW 342


>gi|257054601|ref|YP_003132433.1| D-alanyl-D-alanine carboxypeptidase [Saccharomonospora viridis DSM
           43017]
 gi|256584473|gb|ACU95606.1| D-alanyl-D-alanine carboxypeptidase [Saccharomonospora viridis DSM
           43017]
          Length = 410

 Score =  181 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 96/244 (39%), Gaps = 15/244 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + +V D++   +   K    RY PASL K      +   +  ++L  +  +  +K  A
Sbjct: 99  AAAWLVQDLDTGYVLAAKNPHGRYRPASLIK-----TLLALVVLEELPPDHVVVATKEDA 153

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            Q  + + L E   +T +Q I AL+  S NDV+ A    + G +      M+  A+ +G 
Sbjct: 154 NQECTCVGLVEGGEYTVDQLIHALLMHSGNDVAHALATALGGVDAA-VEKMNALAEWLGA 212

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN------RIIT 225
            +T     SGL     +T+A D +++     +  P Y +    +   +          + 
Sbjct: 213 ADTRAATPSGLDGPGMMTSAYDMSLIFRYAMQQ-PAYAEAVGTKHIDFPGGPGEPDFPVY 271

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-DQKALELI 284
           N N L        G KTG+T ++    V +       I  V++       R  ++A  L+
Sbjct: 272 NDNPLWASYEGFLGGKTGFTDDARHTYVGAAERDGRRIAVVLLQAEQQPIRVAEQAQRLL 331

Query: 285 TSFL 288
               
Sbjct: 332 DYGF 335


>gi|270290040|ref|ZP_06196266.1| D-alanyl-D-alanine carboxypeptidase [Pediococcus acidilactici 7_4]
 gi|270281577|gb|EFA27409.1| D-alanyl-D-alanine carboxypeptidase [Pediococcus acidilactici 7_4]
          Length = 415

 Score =  181 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 74/360 (20%), Positives = 149/360 (41%), Gaps = 48/360 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP-------KYSSIVIDVNKNQMTGFK-QDEPR 75
           +++ + ++  +L  +  +   A+               S++ ID    Q+   K  D+  
Sbjct: 1   MKKVLLVIATLLLFATGVTPAAAATQTSSLVNPEITAKSALAIDSETGQVLYEKHADQVL 60

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQG 131
             AS++K+++ Y+I + +QS K+  +  + ++   A        + + L     +T +  
Sbjct: 61  PIASMSKVLSAYLIMKSVQSGKMRWDQPVKINADIAKISENSELTNVPLTAGKAYTVKNL 120

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------- 182
           + A +  SAN    A G+  +GS +KF   M    +  G+++    NA+GL         
Sbjct: 121 LDASLIYSANAAIIALGKAQAGSSRKFVDEMRATVRSWGIKDAKLYNAAGLLENQVGAEK 180

Query: 183 -----HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNKLL-- 231
                 +     +A D A++   + K FP+  +   I+K  +        + NHN+LL  
Sbjct: 181 YPNSPKNAENQMSANDMAVVIQHVLKEFPEILQITKIQKLDFDTGSGKVTMINHNELLPG 240

Query: 232 ----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL----EL 283
               +  + +DG+KTG +  +G + V + +     I++VV+G  T   R          L
Sbjct: 241 GAQYDHQYQLDGLKTGTSLAAGEDFVATGKVNQRRIISVVLGAKTDH-RFTDTKAIWQAL 299

Query: 284 ITSFLEKKT-LKHQQTHRKDNLSSTSLKKSLM------IKKLKRTYSQFKKIDAKAHSTQ 336
           +T+    KT LK+Q +   D+     +K  L         K      +  ++  K+  T+
Sbjct: 300 MTNLTVVKTNLKNQASVVMDSAKQRQVKLQLAQPLAYWKAKKGGQMPKLDQVKLKSAKTK 359


>gi|308180223|ref|YP_003924351.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|308045714|gb|ADN98257.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 412

 Score =  181 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 114/262 (43%), Gaps = 28/262 (10%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQS 95
           LS  + + A+   A    ++ V+D    Q+   +  D+    ASL+K+MTLY++   ++ 
Sbjct: 23  LSCNVAAHATSSKADEVKAAYVMDAKSGQVVYAQNADQKLPIASLSKLMTLYLVERAIEH 82

Query: 96  KKLHLNTQIPVSKT----AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            ++     +P+ K     A +   S + +  K  FT  +   A +  S+N  + A GE++
Sbjct: 83  GQIKWTDAVPIRKNVRKMATSATLSVMPMPAKETFTVRELFAATLVGSSNSGAIALGEYV 142

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN----------------QITTARDQA 195
           +GS  KF  LM+ +A K  + +  + +ASGL + +                 + +AR   
Sbjct: 143 AGSNDKFIKLMNQQAAKWHL-DASFISASGLDNTDLKNYDLKIKGTSDQDQNLVSARAVT 201

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN------IDGIKTGYTRNSG 249
            +   L   +P   +  + R  +     +    ++L           +DG+KTGYT  +G
Sbjct: 202 TIAQHLIDAYPDVIQVANQRSVKIHKYTVPTSVEILKGAEYYDPRVPVDGLKTGYTNQAG 261

Query: 250 FNIVTSLRYKDDPIVAVVMGMP 271
             +V + R     ++A  +G  
Sbjct: 262 ACLVATYRQNGHRMIATTLGGA 283


>gi|229057005|ref|ZP_04196399.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
 gi|228720282|gb|EEL71858.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
          Length = 407

 Score =  181 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 69/284 (24%), Positives = 120/284 (42%), Gaps = 21/284 (7%)

Query: 59  IDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     M   K  + R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 34  IDAKTGDMLYDKNAQHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 88

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ +AK++G +++ 
Sbjct: 89  YQIEFQPGETINRNTALMILMVLSANDVSYAIAEHIGGSVENFANMMNERAKQLGAKDSH 148

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS----IRKFRYRNRIITNHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  +          +   I N +   
Sbjct: 149 FVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSTQTVSIFNKSTYF 207

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I+ VVM     +  E  ++  E       
Sbjct: 208 EN-PYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMTEYSFGQFT 266

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           K+T+      HQ+T   +    + L+ S  +   K      K  
Sbjct: 267 KQTVLDKHSWHQKTTYLNKDVDSELENSAELMLKKDEGKNVKTA 310


>gi|301337031|ref|ZP_07225233.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia muridarum MopnTet14]
          Length = 398

 Score =  181 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 114/300 (38%), Gaps = 37/300 (12%)

Query: 59  IDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQS--------KKLHLNTQIPVSKT 109
           +  +   +   K  D+  +PAS+TK+ T  +I              ++  L +   ++  
Sbjct: 1   MHADSGAILKEKNLDQKIFPASMTKIATALLILRKHPDVLTRFITIRREPLTS---ITPQ 57

Query: 110 AATQNPSK------------LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           A  Q+  +            + LK K   +      AL+  SAND +    +    S   
Sbjct: 58  AKQQSGYRSPPHWLETDGVAIQLKSKEEVSGWDLFHALLISSANDAANVLADACCQSVPA 117

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   +++  K+IG QNT + +  GLH  +  TTARD AI+     K  P + +      +
Sbjct: 118 FMHQLNDFLKEIGCQNTHFNSPHGLHHPDHYTTARDLAIIMKEALKE-PLFCQVIRTASY 176

Query: 218 RY------RNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
                     R +++ N+LL+           G KTG T+++G NIV +    +  I+ V
Sbjct: 177 TMESTNLSPERTLSSTNRLLSSSSTYFYPPCLGGKTGTTKSAGKNIVFAAEKNNRSIIVV 236

Query: 267 VMGMPTSQER-DQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQF 325
             G      +  Q A+ +      ++ L+          S  +    +     +  Y  F
Sbjct: 237 AAGYFGPAAQLYQDAIAVCEDLFNEQLLRCFLLPPASQYSVKTKFGPITAPVSQGIYYDF 296


>gi|270289644|ref|ZP_06195946.1| D-alanyl-D-alanine carboxypeptidase, putative [Chlamydia muridarum
           Weiss]
          Length = 398

 Score =  181 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 114/300 (38%), Gaps = 37/300 (12%)

Query: 59  IDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQS--------KKLHLNTQIPVSKT 109
           +  +   +   K  D+  +PAS+TK+ T  +I              ++  L +   ++  
Sbjct: 1   MHADSGAILKEKNLDQKIFPASMTKIATALLILRKHPDVLTRFITIRREPLTS---ITPQ 57

Query: 110 AATQNPSK------------LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           A  Q+  +            + LK K   +      AL+  SAND +    +    S   
Sbjct: 58  AKQQSGYRSPPHWLETDGVAIQLKSKEEVSGWDLFHALLISSANDAANVLADACCQSVPA 117

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   +++  K+IG QNT + +  GLH  +  TTARD AI+     K  P + +      +
Sbjct: 118 FMHQLNDFLKEIGCQNTHFNSPHGLHHPDHYTTARDLAIIMKEALKE-PLFCQVIRTASY 176

Query: 218 RY------RNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
                     R +++ N+LL+           G KTG T+++G NIV +    +  I+ V
Sbjct: 177 TMESTNLSPERTLSSTNRLLSSSSTYFYPPCLGGKTGTTKSAGKNIVFAAEKNNRSIIVV 236

Query: 267 VMGMPTSQER-DQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQF 325
             G      +  Q A+ +      ++ L+          S  +    +     +  Y  F
Sbjct: 237 AAGYFGPAAQLYQDAIAVCEDLFNEQLLRCFLLPPASQYSVKTKFGPITAPVSQGIYYDF 296


>gi|270285635|ref|ZP_06195029.1| D-alanyl-D-alanine carboxypeptidase, putative [Chlamydia muridarum
           Nigg]
          Length = 414

 Score =  181 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 114/300 (38%), Gaps = 37/300 (12%)

Query: 59  IDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQS--------KKLHLNTQIPVSKT 109
           +  +   +   K  D+  +PAS+TK+ T  +I              ++  L +   ++  
Sbjct: 1   MHADSGAILKEKNLDQKIFPASMTKIATALLILRKHPDVLTRFITIRREPLTS---ITPQ 57

Query: 110 AATQNPSK------------LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           A  Q+  +            + LK K   +      AL+  SAND +    +    S   
Sbjct: 58  AKQQSGYRSPPHWLETDGVAIQLKSKEEVSGWDLFHALLISSANDAANVLADACCQSVPA 117

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   +++  K+IG QNT + +  GLH  +  TTARD AI+     K  P + +      +
Sbjct: 118 FMHQLNDFLKEIGCQNTHFNSPHGLHHPDHYTTARDLAIIMKEALKE-PLFCQVIRTASY 176

Query: 218 RY------RNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
                     R +++ N+LL+           G KTG T+++G NIV +    +  I+ V
Sbjct: 177 TMESTNLSPERTLSSTNRLLSSSSTYFYPPCLGGKTGTTKSAGKNIVFAAEKNNRSIIVV 236

Query: 267 VMGMPTSQER-DQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQF 325
             G      +  Q A+ +      ++ L+          S  +    +     +  Y  F
Sbjct: 237 AAGYFGPAAQLYQDAIAVCEDLFNEQLLRCFLLPPASQYSVKTKFGPITAPVSQGIYYDF 296


>gi|242239829|ref|YP_002988010.1| D-alanyl-D-alanine endopeptidase [Dickeya dadantii Ech703]
 gi|242131886|gb|ACS86188.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Dickeya
           dadantii Ech703]
          Length = 315

 Score =  181 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 107/260 (41%), Gaps = 16/260 (6%)

Query: 38  SIIMISMASELHAK---PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYL 93
           ++   S A    A+      S++V+D+  N++      +   P AS+TK+MT  ++ +  
Sbjct: 25  AMAQTSTAPHAAARQEIASGSAMVVDLRNNEVLYSTNPDVVVPIASVTKLMTAMVVLDAN 84

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           Q     ++  + +S+TA         ++  +  +    +L  +  S N  + +      G
Sbjct: 85  QPMDERIS--VDISQTA-EMKGVYSRVRLGSEISRHDMLLLALMSSENRAAASLAHHYRG 141

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
             + F   M+ KAK +GM +T Y   +GL   N ++TARD   L ++  K +P   +  +
Sbjct: 142 GYQAFIAAMNAKAKALGMTHTRYVEPTGLSIHN-VSTARDLTKL-LIASKQYPLLSQLST 199

Query: 214 I--RKFRYRNRII----TNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
              +   + N        N N L+ +   NI   KTG+T  +G  +V        P+  V
Sbjct: 200 TQEKTATFTNPSYSLPFRNTNHLIYRSDWNIQLTKTGFTNQAGHCLVMRTVINQRPVALV 259

Query: 267 VMGMPTSQERDQKALELITS 286
           V+           A  L   
Sbjct: 260 VLDAFGKFTHFADANRLRNW 279


>gi|269302456|gb|ACZ32556.1| D-alanyl-D-alanine carboxypeptidase family protein [Chlamydophila
           pneumoniae LPCoLN]
          Length = 436

 Score =  181 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 69/318 (21%), Positives = 117/318 (36%), Gaps = 41/318 (12%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
             +    I   G    LS+       E+      ++ V+  +  ++   K  D   YPAS
Sbjct: 4   PFFTYLCIIFYGSCASLSLHAGLSFPEVRGA---TAAVVHADSGKVFYDKDIDAVIYPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--------------------NPSKLY 119
           +TK+ T   I ++  +    L+T I V + A                       + S + 
Sbjct: 61  MTKIATALFILKHYPT---VLDTLIKVKQDAIASITPQAKKQSGYRSPPHWLETDGSTIQ 117

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK-IGMQNTIYKN 178
           L  +          AL+  SAND +        GS +KF   ++   K+ IG  +T + N
Sbjct: 118 LHLREELLGWDLFHALLVCSANDAANVLAMACCGSVEKFMDKLNFFLKEEIGCTHTHFNN 177

Query: 179 ASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR------YRNRIITNHNKLL- 231
             GLH  N  TT RD   +     K  P +    S   ++      +  RI++  NKLL 
Sbjct: 178 PHGLHHPNHYTTTRDLISIMRCALKE-PPFRGVISTTSYKIGATNLHGERILSPTNKLLL 236

Query: 232 ----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS-QERDQKALELITS 286
                      G KTG T+ +G N++ +    +  +V +  G      +  Q  + L  +
Sbjct: 237 PGSTYHYPPALGGKTGTTKTAGKNLIMAAEKNNRLLVTIATGYSGPVSDLYQDVIALCET 296

Query: 287 FLEKKTLKHQQTHRKDNL 304
              +  L+ +     D L
Sbjct: 297 VFNEPLLRKELVPPSDCL 314


>gi|15618582|ref|NP_224868.1| D-Ala-D-Ala carboxypeptidase [Chlamydophila pneumoniae CWL029]
 gi|15836204|ref|NP_300728.1| D-Ala-D-Ala carboxypeptidase [Chlamydophila pneumoniae J138]
 gi|16752369|ref|NP_444627.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila pneumoniae AR39]
 gi|33242029|ref|NP_876970.1| serine-type D-Ala-D-Ala carboxypeptidase [Chlamydophila pneumoniae
           TW-183]
 gi|4376972|gb|AAD18811.1| D-Ala-D-Ala Carboxypeptidase [Chlamydophila pneumoniae CWL029]
 gi|7189011|gb|AAF37962.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila pneumoniae AR39]
 gi|8979044|dbj|BAA98879.1| D-Ala-D-Ala carboxypeptidase [Chlamydophila pneumoniae J138]
 gi|33236539|gb|AAP98627.1| serine-type D-Ala-D-Ala carboxypeptidase [Chlamydophila pneumoniae
           TW-183]
          Length = 436

 Score =  181 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 69/318 (21%), Positives = 117/318 (36%), Gaps = 41/318 (12%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
             +    I   G    LS+       E+      ++ V+  +  ++   K  D   YPAS
Sbjct: 4   PFFTYLCIIFYGSCASLSLHAGLSFPEVRGA---TAAVVHADSGKVFYDKDIDAVIYPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--------------------NPSKLY 119
           +TK+ T   I ++  +    L+T I V + A                       + S + 
Sbjct: 61  MTKIATALFILKHYPT---VLDTLIKVKQDAIASITPQAKKQSGYRSPPHWLETDGSTIQ 117

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK-IGMQNTIYKN 178
           L  +          AL+  SAND +        GS +KF   ++   K+ IG  +T + N
Sbjct: 118 LHLREELLGWDLFHALLVCSANDAANVLAMACCGSVEKFMDKLNFFLKEEIGCTHTHFNN 177

Query: 179 ASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR------YRNRIITNHNKLL- 231
             GLH  N  TT RD   +     K  P +    S   ++      +  RI++  NKLL 
Sbjct: 178 PHGLHHPNHYTTTRDLISIMRCALKE-PPFRGVISTTSYKIGATNLHGERILSPTNKLLL 236

Query: 232 ----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS-QERDQKALELITS 286
                      G KTG T+ +G N++ +    +  +V +  G      +  Q  + L  +
Sbjct: 237 PGSTYHYPPALGGKTGTTKTAGKNLIMAAEKNNRLLVTIATGYSGPVSDLYQDVIALCET 296

Query: 287 FLEKKTLKHQQTHRKDNL 304
              +  L+ +     D L
Sbjct: 297 VFNEPLLRKELVPPSDCL 314


>gi|324990581|gb|EGC22517.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK353]
          Length = 455

 Score =  181 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 132/301 (43%), Gaps = 45/301 (14%)

Query: 24  IQRNIQLMGKILFLSIIMISM-ASELHAKPKY--------------SSIVIDVNKNQMTG 68
           +++ + L+G +   S+  ++  A EL    K               SS+VID +   +  
Sbjct: 5   VKKKLLLLGIVFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPKSSLVIDGSTGDVVW 64

Query: 69  FKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEK 123
               DE R PAS++K+MTLY++FE ++  K+   T I  +     TA     S   +   
Sbjct: 65  EDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQATANIYEISNNKIVAG 124

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGL 182
             +T  + I   I  S+N  +     ++S ++   F   M+ KA+++GM NT + NASG 
Sbjct: 125 VDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGA 184

Query: 183 HD---------------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NR 222
                             +  TTARD AIL      + P+   Y +  K   +       
Sbjct: 185 AAVSFKGYYNPQNYDNYASNQTTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGTPYEE 244

Query: 223 IITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
               +N  L      +  +DG+KTG + N  FN + +++  D  ++AV+MG+    ++D 
Sbjct: 245 TFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDWSDQDG 304

Query: 279 K 279
           +
Sbjct: 305 E 305


>gi|167760257|ref|ZP_02432384.1| hypothetical protein CLOSCI_02630 [Clostridium scindens ATCC 35704]
 gi|167662140|gb|EDS06270.1| hypothetical protein CLOSCI_02630 [Clostridium scindens ATCC 35704]
          Length = 475

 Score =  181 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 106/233 (45%), Gaps = 25/233 (10%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-- 111
           ++IV++V    +   K  D  +YPAS+TK++T  +  E  Q     L   +  S  +   
Sbjct: 91  AAIVMEVGTGAILYAKNIDSHQYPASITKVLTALVAMENGQ-----LEDPVTFSHDSVAF 145

Query: 112 -TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS----EKKFAILMSNKA 166
                S + LKE    + EQ + A +  SAN+ + A GE +  +       F   M+ + 
Sbjct: 146 LKPGDSSVGLKEGNQISLEQALHATLLASANEAAYAVGESVGINAGHDYNWFMEQMNIRC 205

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF------RYR 220
           +++G +N+ + N +GLHD+N  T ARD A++G  L K  P +++      +         
Sbjct: 206 RELGGENSNFANTNGLHDENHYTCARDMALIGRELFK-HPDFFRIVQTLNYAIPASETVE 264

Query: 221 NRIITNHNKLL-----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             I    +K+L     N      G KTG+T ++   ++T        +V VV+
Sbjct: 265 EHIFQQKHKMLIPENSNYYPYAIGGKTGFTSDALSTLITMADNGGMQLVCVVL 317


>gi|327458687|gb|EGF05035.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK1057]
          Length = 455

 Score =  181 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 132/301 (43%), Gaps = 45/301 (14%)

Query: 24  IQRNIQLMGKILFLSIIMISM-ASELHAKPKY--------------SSIVIDVNKNQMTG 68
           +++ + L+G +   S+  ++  A EL    K               SS+VID +   +  
Sbjct: 5   VKKKLLLLGIVFLTSLAPLAARADELVDMAKKMYPHDNVQTINRPKSSLVIDGSTGDVVW 64

Query: 69  FKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEK 123
               DE R PAS++K+MTLY++FE ++  K+   T I  +     TA     S   +   
Sbjct: 65  EDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQATANIYEISNNKIVAG 124

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGL 182
             +T  + I   I  S+N  +     ++S ++   F   M+ KA+++GM NT + NASG 
Sbjct: 125 VDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGA 184

Query: 183 HD---------------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NR 222
                             +  TTARD AIL      + P+   Y +  K   +       
Sbjct: 185 AAVSFKGYYNPQNYDNYASNQTTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGTPYEE 244

Query: 223 IITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
               +N  L      +  +DG+KTG + N  FN + +++  D  ++AV+MG+    ++D 
Sbjct: 245 TFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDWSDQDG 304

Query: 279 K 279
           +
Sbjct: 305 E 305


>gi|326205032|ref|ZP_08194882.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           papyrosolvens DSM 2782]
 gi|325984837|gb|EGD45683.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           papyrosolvens DSM 2782]
          Length = 405

 Score =  181 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 71/268 (26%), Positives = 123/268 (45%), Gaps = 16/268 (5%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYI 88
           ++  IL L+   +   +   +    S +++D  + Q+   K       P+ + K+MT  +
Sbjct: 9   IVTMILVLNSFPVFAWTPAESLTSSSVVLMDTVRGQVLFGKNAYKHLSPSVMCKLMTALV 68

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
             E     K  LN ++ +SK AA+ N   L L     +T E  + A++    ND + A  
Sbjct: 69  TIE-----KTDLNAKVTISKNAASFNG--LNLVVGNQYTVEDLLYAVMLSQGNDAAVALA 121

Query: 149 EFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
           E++  G  +KF   M+ KAK++ +++T + N +GL++K+Q T+A D A+L      N   
Sbjct: 122 EYVGDGDIQKFVRYMNTKAKELSLKDTYFVNPTGLYEKSQYTSANDIALLIKAAISN-NT 180

Query: 208 YYKYFSIRKFRYRNR----IITNHNKLLNKMHNIDGIKTG-YTRNSGFNIVTSLRYKDDP 262
           +   F  R F + N     I+TN N L      +DG K G  T    F+ VT+    D  
Sbjct: 181 FNVIFGARGFGWLNGNDSSILTNQNTLFWSYKGVDGGKLGANTNPQSFSAVTTAFQNDKR 240

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEK 290
           ++AVV    + +    +  +L      K
Sbjct: 241 LIAVVFN-NSKENAFSETAKLFDYGFSK 267


>gi|317473054|ref|ZP_07932354.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
 gi|316899483|gb|EFV21497.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
          Length = 302

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/236 (24%), Positives = 109/236 (46%), Gaps = 18/236 (7%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL--QSKKLHLNTQIPVSKTAA 111
           ++++ +    ++   KQ ++  YPASLTK+MT+ +  E +    K++ +N    + ++ A
Sbjct: 54  AAVLAEQKSGRILMNKQGNKKIYPASLTKIMTVLLAVESVSNDEKEILMNQ--DIFQSLA 111

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S            +      +  S  +       +++GSE+KFA+LM+ KA++IGM
Sbjct: 112 QSHASVAGFLPGERVKIKDLYYGAMLPSGAECCLRLANYLAGSEEKFALLMNQKAREIGM 171

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T + N++GLHD   ++TA D  IL     KN P++ K F   ++R           LL
Sbjct: 172 KHTNFVNSTGLHDPKHVSTAEDLEILLRYALKN-PRFRKVFETMQYRTEPTQKHPEGLLL 230

Query: 232 NK----MHN--------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
                   +          G KTGYT+ +G  + + +  +    + V  G     +
Sbjct: 231 QSTLTDYKDQLKPTNGSFLGGKTGYTKEAGLCLASWVNIRGKRYILVTAGARGDHQ 286


>gi|160945058|ref|ZP_02092284.1| hypothetical protein FAEPRAM212_02576 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442789|gb|EDP19794.1| hypothetical protein FAEPRAM212_02576 [Faecalibacterium prausnitzii
           M21/2]
          Length = 325

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 100/241 (41%), Gaps = 23/241 (9%)

Query: 56  SIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKTA 110
           +I++D    ++   K  DE   PASLTKMMT+ +  E     +  L+ Q+     +    
Sbjct: 73  AILLDAQSGRVLAQKRADERTAPASLTKMMTVLLAIE----TEPDLDKQVTLPEDIFPAL 128

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            T+  S          T    +   +  S  +   A  + +SGSE+ FA LM+ KA ++G
Sbjct: 129 QTEKASMAGFVPDETVTVRDLLYGAMLPSGAECCEALAQLVSGSEENFAALMNQKAAELG 188

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN---- 226
           M+NT + NA+GL D    ++A D A L      N   +   F+ + +             
Sbjct: 189 MKNTHFTNATGLTDTEHYSSAADMAKLLQAALHN-TTFRTIFTTKHYTTTATAQHPEGVS 247

Query: 227 -HNKLLNKMHN--------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
             + LL K+          I+G KTGYT  +G  + +         + V +  P     +
Sbjct: 248 LTSTLLGKLDGTELPTGTQIEGGKTGYTAAAGLCLASLATVNGKEYILVTLAAPGDHGTE 307

Query: 278 Q 278
           Q
Sbjct: 308 Q 308


>gi|327485860|gb|AEA80266.1| Murein-DD-endopeptidase [Vibrio cholerae LMA3894-4]
          Length = 316

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/243 (25%), Positives = 105/243 (43%), Gaps = 15/243 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTA 110
             S++VID+  N++      D  +  AS+TK+MT  +  +     KL ++ ++P++ K A
Sbjct: 47  ANSALVIDLKTNEIIYSNNPDAVKPIASVTKLMTAIVTLDA----KLPMDAKLPITIKDA 102

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                    +K  +  + +  +L  +  S N  + +      G  K F   M+ KAK +G
Sbjct: 103 KEMKGVHSRVKIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALG 162

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------NRII 224
           M+NT +   +GL  KN ++TARD  +L     K +P   K  +  K              
Sbjct: 163 MKNTRFVEPTGLSAKN-VSTARDLVVLLKA-SKKYPLLGKLSATDKKTVTFSKPRYTLDF 220

Query: 225 TNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            N N+L++  +  ID  KTG+T  +G  +V   +     +  VV+           A  L
Sbjct: 221 RNTNRLVHNDNWKIDLTKTGFTNAAGHCLVMRTQMGRRQVAFVVLDTKGKLSPVGDANRL 280

Query: 284 ITS 286
            T 
Sbjct: 281 RTW 283


>gi|70727253|ref|YP_254169.1| penicillin binding protein 4 [Staphylococcus haemolyticus JCSC1435]
 gi|68447979|dbj|BAE05563.1| penicillin binding protein 4 [Staphylococcus haemolyticus JCSC1435]
          Length = 430

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 73/362 (20%), Positives = 140/362 (38%), Gaps = 51/362 (14%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSI--------VIDV----------NKNQ 65
           ++R++ +   +L   +I+   +     +P  + I        V D              Q
Sbjct: 1   MKRSLIITFALLLTIVIIAPNSYASEYEPTPTEIARQYGYPNVTDAYQPEGSINVSQTGQ 60

Query: 66  MTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKLYL 120
           +   ++ ++  YPAS+TK+MT+Y+  E +   +L LN ++ ++            S   L
Sbjct: 61  ILYDYQSNQKWYPASMTKLMTMYLTLEAVNKGELSLNDKVHITDKHYRMSTLPELSNTKL 120

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
                +T  + +   ++ S+N  +    + +SG+   F  LM+ KAK +GM NT + N +
Sbjct: 121 YAGETYTISELLQITVSNSSNAAALILADEVSGNVNDFTDLMNKKAKALGMSNTHFVNPT 180

Query: 181 GLHDK--------------NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
           G  +K              N  +TA+D AIL   + K  P+   +               
Sbjct: 181 GAENKQLKEFAPSKYKNQDNTTSTAKDFAILDHHVIKETPKILHFTKQLAPTQHGVTYYT 240

Query: 227 HNKLLNKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------SQER 276
            N  L          DG+KTG +  + +N   + +  +  I  V+MG          ++R
Sbjct: 241 FNHSLEGAKMSLLGTDGLKTGSSDVADYNHTITTKRNNFRINQVIMGAGDYVNLGGEKQR 300

Query: 277 DQKALELITSFLEKKTLKH---QQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAH 333
           +     ++    ++ + K    + TH+  N     +K +L     K    +  K   K  
Sbjct: 301 NMMGNAMMNRSFDQYSYKKVLSKGTHKI-NGKKYYVKDNLYDVVPKGMNKKDYKFIVKDG 359

Query: 334 ST 335
           S 
Sbjct: 360 SI 361


>gi|253577898|ref|ZP_04855170.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850216|gb|EES78174.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 356

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 110/249 (44%), Gaps = 25/249 (10%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-QN 114
           ++  ++ +++       +  YPAS+TK+MT  +  +  +     LN  + +++   T ++
Sbjct: 111 LLFSLSNHKVLYANGIYDKVYPASITKIMTAMLALQSGK-----LNDTVTITQDNVTLED 165

Query: 115 PSKL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
            S++         T +Q +  L+  S ND ++A  E++ GS + F  +M++ A K+G   
Sbjct: 166 GSQVCGFVAGDQVTLDQLLHCLLVYSGNDAASAIAEYVGGSTENFVQMMNDYAAKLGCTG 225

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY---------RNRII 224
           T + N  GL D+N  TT  D  ++       +P++ +   +  +           ++  +
Sbjct: 226 THFSNPHGLQDENHYTTPYDIYLMLNEAF-TYPEFTEITELPSYTVTYTGSDGTEKSTTL 284

Query: 225 TNHNKLLN------KMHNIDGIKTGYTRNSGFNIVTSLRYK-DDPIVAVVMGMPTSQERD 277
           T  +  L       K   I G KTG T  +G  +    +       V++VMG  T +   
Sbjct: 285 TATDHYLTGEATAPKDVTILGGKTGTTEVAGNCLAILTQNAYGKTFVSIVMGAATKELLY 344

Query: 278 QKALELITS 286
           Q+   L+ +
Sbjct: 345 QEMNSLLQN 353


>gi|325690106|gb|EGD32110.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK115]
          Length = 455

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 75/301 (24%), Positives = 133/301 (44%), Gaps = 45/301 (14%)

Query: 24  IQRNIQLMGKILFLSIIMISM-ASELHAKPKY--------------SSIVIDVNKNQMTG 68
           +++ + L+G +   S+  ++  A EL    K               SS+V+D +   +  
Sbjct: 5   VKKKLLLLGIVFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPKSSLVMDGSTGDVVW 64

Query: 69  FKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEK 123
               DE R PAS++K+MTLY++FE ++  K+   T I  +     TA     S   +   
Sbjct: 65  EDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQATANIYEISNNKIVAG 124

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNAS-- 180
             +T  + I   I  S+N  +     ++S ++   F   M+ KA+++GM NT + NAS  
Sbjct: 125 VDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGA 184

Query: 181 ------GLHDKNQI-------TTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NR 222
                 G ++           TTARD AIL      + P+   Y +  K   +       
Sbjct: 185 AAISFKGYYNPQNYDNTLSNQTTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGTPYEE 244

Query: 223 IITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
               +N  L      +  +DG+KTG + N  FN + +++  D  ++AV+MG+    ++D 
Sbjct: 245 TFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDWSDQDG 304

Query: 279 K 279
           +
Sbjct: 305 E 305


>gi|312868004|ref|ZP_07728208.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis F0405]
 gi|311096408|gb|EFQ54648.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis F0405]
          Length = 413

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 76/329 (23%), Positives = 135/329 (41%), Gaps = 30/329 (9%)

Query: 28  IQLMGKILFLSIIM--ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMM 84
           +  +  IL L  +   + +A EL   P  S+I ++ +  ++   K  E  R    L+ ++
Sbjct: 6   LSFLTFILLLCSLPYQVVLADELEL-PAQSAIAVEADTGKILYEKDSEKKRDVGGLSTLL 64

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAAT---QNPSKLYLKEKTYFTTEQGILALITRSAN 141
           T Y+IFE +  KKL L   I +S+ A        +     E   +T EQ + AL+  +++
Sbjct: 65  TTYLIFEAIHEKKLSLKDPIKLSEKALALNYIEGAGTLPMEANQYTVEQLLTALLVGNSS 124

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-----------DKNQITT 190
             + A  E + GSEK F   M  K  + G+Q+    NA+GL+           +     +
Sbjct: 125 TAALALAEKVGGSEKSFVEKMKQKLTEWGIQSPHLINATGLNTQTISGDPDGKEDENQLS 184

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIKTGYTR 246
           A D A++   L ++FP+  KY S     + N  I N N +L  M      +DG++   + 
Sbjct: 185 AYDIAVIAKHLLQDFPEVTKYTSKPTALFSNTQIENPNLMLEGMPNYRSGVDGLRVSNSN 244

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKTLKHQQT 298
             G     S       ++ VV+G+         R      L+      F+    +K    
Sbjct: 245 KGGITFAASTTQNGIHMITVVLGVDAVDGDPYARFVATSSLMNYVVRTFVPSIVVKEGDP 304

Query: 299 HRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
           + K   +    K   ++   K+ +   +K
Sbjct: 305 YGKSKATIMDGKSETVLAVAKKDFYIVEK 333


>gi|229522399|ref|ZP_04411815.1| murein-DD-endopeptidase [Vibrio cholerae TM 11079-80]
 gi|229340384|gb|EEO05390.1| murein-DD-endopeptidase [Vibrio cholerae TM 11079-80]
          Length = 316

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/243 (25%), Positives = 105/243 (43%), Gaps = 15/243 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTA 110
             S++VID+  N++      D  +  AS+TK+MT  +  +     KL ++ ++P++ K A
Sbjct: 47  ANSALVIDLKTNEIIYSNNPDAVKPIASVTKLMTAIVTLDA----KLPMDAKLPITIKDA 102

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                    +K  +  + +  +L  +  S N  + +      G  K F   M+ KAK +G
Sbjct: 103 KEMKGVHSRVKIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALG 162

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------NRII 224
           M+NT +   +GL  KN ++TARD  +L     K +P   K  +  K              
Sbjct: 163 MKNTRFVEPTGLSAKN-VSTARDLVVLLKA-SKKYPLLGKLSATDKKTVTFSKPRYTLDF 220

Query: 225 TNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            N N+L++  +  ID  KTG+T  +G  +V   +     +  VV+           A  L
Sbjct: 221 RNTNRLVHNDNWKIDLTKTGFTNAAGHCLVMRTQMGRRQVAFVVLDTKGKLSPVGDANRL 280

Query: 284 ITS 286
            T 
Sbjct: 281 RTW 283


>gi|169351202|ref|ZP_02868140.1| hypothetical protein CLOSPI_01981 [Clostridium spiroforme DSM 1552]
 gi|169292264|gb|EDS74397.1| hypothetical protein CLOSPI_01981 [Clostridium spiroforme DSM 1552]
          Length = 415

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/250 (26%), Positives = 107/250 (42%), Gaps = 13/250 (5%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           I L+  I  ++ I     SE        ++ ID N   +   K  DE  YPAS+TK+MT 
Sbjct: 10  ISLVCTISLITPIRALDNSEEIGLSAQYAVAIDANSGLILYNKNMDERMYPASMTKVMTA 69

Query: 87  YIIFEYLQSKKLHLNTQIPVSK--TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
            +  + ++   L   T I  +   T      S    +     T    +L  I  S  D +
Sbjct: 70  IVALDMIE--NLDKTTVITQNDIDTVWETGASSANFEVGETVTYRDLLLGAILPSGADAT 127

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A    + GS++ F   M+  AKK+ +++T + N +G+HD N  TT  D A++      N
Sbjct: 128 RALANNLCGSQEAFVEKMNECAKKLKLKDTHFVNTTGIHDDNHYTTVHDMALIVQYAVAN 187

Query: 205 FPQYYKYFSIRKFRYRNRIITNHNKLLN-------KMHNIDGIKTGYTRNSGFNIVTSLR 257
            P + + +S R     N +    NK +           +I G K+GYT  +   + +  +
Sbjct: 188 -PTFKEIYSKRYATSSNGLHQWVNKSVYNAKRSNINTDSIIGCKSGYTDAAKNCLSSLDK 246

Query: 258 YKDDPIVAVV 267
             D+ I+ VV
Sbjct: 247 VGDNEIIVVV 256


>gi|167745400|ref|ZP_02417527.1| hypothetical protein ANACAC_00091 [Anaerostipes caccae DSM 14662]
 gi|167655121|gb|EDR99250.1| hypothetical protein ANACAC_00091 [Anaerostipes caccae DSM 14662]
          Length = 302

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/236 (24%), Positives = 109/236 (46%), Gaps = 18/236 (7%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL--QSKKLHLNTQIPVSKTAA 111
           ++++ +    ++   KQ ++  YPASLTK+MT+ +  E +    K++ +N    + ++ A
Sbjct: 54  AAVLAEQKSGRILMNKQGNKKIYPASLTKIMTVLLAVESVSNDEKEILMNQ--DIFQSLA 111

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S            +      +  S  +       +++GSE+KFA+LM+ KA++IGM
Sbjct: 112 QSHASVAGFLPGERVKIKDLYYGAMLPSGAECCLRLANYLAGSEEKFALLMNQKAREIGM 171

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           ++T + N++GLHD   ++TA D  IL     KN P++ K F   ++R           LL
Sbjct: 172 KHTNFVNSTGLHDPKHVSTAEDLEILLRYALKN-PRFRKVFETMQYRTEPTQKHPEGLLL 230

Query: 232 NK----MHN--------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
                   +          G KTGYT+ +G  + + +  +    + V  G     +
Sbjct: 231 QSTLTDYKDQLKPTNGSFLGGKTGYTKEAGLCLASWVNIRGKRYILVTAGARGDHQ 286


>gi|332365993|gb|EGJ43749.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK1059]
          Length = 455

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 132/301 (43%), Gaps = 45/301 (14%)

Query: 24  IQRNIQLMGKILFLSIIMISM-ASELHAKPKY--------------SSIVIDVNKNQMTG 68
           +++ + L+G +   S+  ++  A EL    K               SS+VID +   +  
Sbjct: 5   VKKKLLLLGIVFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPKSSLVIDGSTGDVVW 64

Query: 69  FKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEK 123
               DE R PAS++K+MTLY++FE ++  K+   T I  +     TA     S   +   
Sbjct: 65  EDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQATANIYEISNNKIVAG 124

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGL 182
             +T  + I   I  S+N  +     ++S ++   F   M+ KA+++GM NT + NASG 
Sbjct: 125 VDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGA 184

Query: 183 HD---------------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NR 222
                             +  TTARD AIL      + P+   Y +  K   +       
Sbjct: 185 AAVSFKGYYNPQNYDNYASNQTTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGTPYEE 244

Query: 223 IITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
               +N  L      +  +DG+KTG + N  FN + +++  D  ++AV+MG+    ++D 
Sbjct: 245 TFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDWSDQDG 304

Query: 279 K 279
           +
Sbjct: 305 E 305


>gi|325266278|ref|ZP_08132957.1| D-alanyl-D-alanine carboxypeptidase [Kingella denitrificans ATCC
           33394]
 gi|324982240|gb|EGC17873.1| D-alanyl-D-alanine carboxypeptidase [Kingella denitrificans ATCC
           33394]
          Length = 317

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 106/239 (44%), Gaps = 14/239 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++ +++ N  Q+   K  +  R  AS++K+M   ++ +     +L +   I +++   
Sbjct: 76  AQAAAIMNANTGQILFQKNMNSVRSIASISKLMAAMVVLDA----RLDMGQTITITEAEI 131

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   +   L   T  T  Q +   +  S N    A      G    F   M+ KA+ +G
Sbjct: 132 DRLKGTGSRLSIGTELTRTQLLHLGLMSSENRAIHALARTYPGGMSAFVQAMNAKAQSLG 191

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK---FRYRNRII--T 225
           M++T +   +GL D   ++TA D  ++     + +PQ  ++ + +    +    R+    
Sbjct: 192 MRHTRFYEPTGL-DPRNVSTASDLLLMAQAADR-YPQIRQFSTAKSGQVYTSAGRVQQYQ 249

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           N N L+ +   NI   KTGY R +G ++V   +   DPI+ VV+G  TS  R   A  L
Sbjct: 250 NSNALVREGRWNISVQKTGYIREAGRSMVLKTQMGRDPIIMVVLGSSTSTTRVNDARTL 308


>gi|304385702|ref|ZP_07368046.1| serine-type D-Ala-D-Ala carboxypeptidase [Pediococcus acidilactici
           DSM 20284]
 gi|304328206|gb|EFL95428.1| serine-type D-Ala-D-Ala carboxypeptidase [Pediococcus acidilactici
           DSM 20284]
          Length = 415

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 74/360 (20%), Positives = 149/360 (41%), Gaps = 48/360 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP-------KYSSIVIDVNKNQMTGFK-QDEPR 75
           +++ + ++  +L  +  +   A+               S++ ID    Q+   K  D+  
Sbjct: 1   MKKVLLVIATLLLFATGVTPAAAATQTSSLVNPEITAKSALAIDSETGQVLYEKHADQVL 60

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQG 131
             AS++K+++ Y+I + +QS K+  +  + ++   A        + + L     +T +  
Sbjct: 61  PIASMSKVLSAYLIMKSVQSGKMRWDQPVKINADIAKISENSELTNVPLTAGKSYTVKNL 120

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------- 182
           + A +  SAN    A G+  +GS +KF   M    +  G+++    NA+GL         
Sbjct: 121 LDASLIYSANAAIIALGKAQAGSSRKFVDKMRATVRSWGIKDAKLYNAAGLLENQVGAEK 180

Query: 183 -----HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNKLL-- 231
                 +     +A D A++   + K FP+  +   I+K  +        + NHN+LL  
Sbjct: 181 YPNSPKNAENQMSANDMAVVIQHVLKEFPEILQITKIQKLDFDTGSGKVTMINHNELLPG 240

Query: 232 ----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL----EL 283
               +  + +DG+KTG +  +G +   + +     I++VV+G  T Q R          L
Sbjct: 241 GAQYDHQYQLDGLKTGTSLAAGEDFAATGKVNQRRIISVVLGAKTDQ-RFTDTKAIWQAL 299

Query: 284 ITSFLEKKT-LKHQQTHRKDNLSSTSLKKSLM------IKKLKRTYSQFKKIDAKAHSTQ 336
           +T+    KT LK+Q +   D+     +K  L         K      +  ++  K+  T+
Sbjct: 300 MTNLTVVKTNLKNQASVVMDSAKQRQVKLQLAQPLAYWKAKKGGQMPKLDQVKLKSAKTK 359


>gi|110803688|ref|YP_699253.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens SM101]
 gi|110684189|gb|ABG87559.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens SM101]
          Length = 423

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 72/321 (22%), Positives = 133/321 (41%), Gaps = 29/321 (9%)

Query: 31  MGKILFLSIIMISMASELHAKPKYS--SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLY 87
           +   LF  I     A+E+         ++ +D    ++   K  DE  YPAS TK+MT  
Sbjct: 16  LSVSLFAPIKATVQAAEISQPNIVGKYAVTLDYETGEIIYAKGIDEKAYPASTTKVMTSL 75

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-----YLKEKTYFTTEQGILALITRSAND 142
           +  E+        N   P +  A  Q P  L      +           + AL+  SAND
Sbjct: 76  LFAEHASK-----NDSFPYTADAKVQQPYTLNDSFGPIPVGEGMNANDLMKALLMFSAND 130

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            +    + ++GS +KF+++M+++ KK+G++NT +   +GLH+ +  +TA D A++     
Sbjct: 131 AAAVIADGVAGSTEKFSVMMNDEVKKLGLKNTHFVTPNGLHNDDHYSTAYDLAVILQNAY 190

Query: 203 KNFPQYYKYFSIR----KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
           KN P   +  +++        +  ++ N NK L  ++   G KTG+T  +G  +V+    
Sbjct: 191 KN-PWVRETMALKDSDITVNGKKVLLENRNKELG-INGNIGGKTGFTTPAGRCLVSVYER 248

Query: 259 KDDPIVAVVMGMPTSQER---DQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMI 315
               I+  V+      +         ++I        + + +     +            
Sbjct: 249 NGRKIIGTVLNSQYDAKDEIVFNDMNKIIDYSYSVDKVPYIKAGTTIDTIPVEY------ 302

Query: 316 KKLKRTYSQFKKIDAKAHSTQ 336
            KL R +   KKID    +T+
Sbjct: 303 -KLFRWFGPTKKIDVPFVATE 322


>gi|115352221|ref|YP_774060.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ambifaria AMMD]
 gi|172061088|ref|YP_001808740.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ambifaria MC40-6]
 gi|115282209|gb|ABI87726.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Burkholderia ambifaria AMMD]
 gi|171993605|gb|ACB64524.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ambifaria MC40-6]
          Length = 384

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 101/249 (40%), Gaps = 14/249 (5%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            +  A     + V+D N  +    K      P AS++K+MT  ++ +     K  +  Q+
Sbjct: 123 PDALALRSSVAYVVDQNTGEPLFDKNSHAVVPIASISKLMTAMVVLDA----KSPMTDQL 178

Query: 105 PVSKTAATQN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            V+         +   L   +  + E  +   +  S N  + A   +  G    F   M+
Sbjct: 179 EVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMN 238

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY---- 219
            KAK +GM +T ++N++GL   N +++ARD   +     + +P   ++ + R +      
Sbjct: 239 AKAKSLGMNDTHFENSTGLSSSN-VSSARDLVKMVNAAYQ-YPMIRQFSTDRTYDVYTGK 296

Query: 220 RNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           RN +  + N L+  N   +I   KTG+   +G  +V        P+V V++       R 
Sbjct: 297 RNLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGRPMVMVLLDSFGKYSRF 356

Query: 278 QKALELITS 286
             A  L   
Sbjct: 357 ADASRLRNW 365


>gi|291531742|emb|CBK97327.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum 70/3]
          Length = 466

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 71/361 (19%), Positives = 131/361 (36%), Gaps = 49/361 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP---------------KYSSIVIDVNKNQMTG 68
           +++ ++    +L  ++++ S++    A+                  +  +++ +   +  
Sbjct: 1   MKKILRFASALLCGAMLLCSLSVTAFAENDDEVYDFDPNTDKIYSEAVYMVNTDTGDVVY 60

Query: 69  FKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS------KTAATQNPSKLYLK 121
            K + +  YPAS TK+MT  I  E+L    L    ++P        +     +PS   ++
Sbjct: 61  KKNESKKMYPASTTKIMTCIIALEHLSEASLSKKVEVPYDCFNDFYEDPNYSDPSNAAIE 120

Query: 122 E-KTYFTTEQGILALITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNA 179
             +   T +  + AL+  SA + +      I G S  KF  +M+ KAK++G   T + NA
Sbjct: 121 PLQDNLTYKDCLYALMLPSACEAANILAYNIGGGSITKFIGMMNEKAKELGCTGTNFVNA 180

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-------NRIITNHNKLLN 232
            GLH+ N  TTA D   +       FP + K  S  ++             I +   LL 
Sbjct: 181 HGLHNDNNYTTAEDLYKMTKYAYDKFPLFKKITSTYEYEMPKNDANPDGYSIYSTISLLR 240

Query: 233 K-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP---------TSQERDQ 278
                      G KTG T  +G  +V++ +      + V +G P                
Sbjct: 241 PGSVYEYEYAYGTKTGTTDEAGRCLVSAAK-NQYNYILVTLGAPVKDKNGEYYDDWYSMI 299

Query: 279 KALELITSF---LEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
            AL L        E  T+ +      +         + +I   +  Y+       K    
Sbjct: 300 DALNLYKWAFTNFEMATVVNNDEQITEVKVEMGESATHVILTPESDYTALMPKSVKESGV 359

Query: 336 Q 336
           Q
Sbjct: 360 Q 360


>gi|322833771|ref|YP_004213798.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Rahnella sp.
           Y9602]
 gi|321168972|gb|ADW74671.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Rahnella sp.
           Y9602]
          Length = 310

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/268 (23%), Positives = 103/268 (38%), Gaps = 15/268 (5%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
              + +      S++V+D+  +++   +  DE R  ASLTK+MT  +  +      L L+
Sbjct: 30  PAVAPIVQIASGSAMVVDLKSHEVIYSRNPDEVRPIASLTKLMTAMVTLDA----NLPLD 85

Query: 102 TQIPVS-KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
             I +              +K  +  T  Q I   +  S N  + +      G    F  
Sbjct: 86  EVINIDISNTPEMRGVFSRVKLNSEITRRQMIQLALMSSENRAAASLAAHYPGGYSAFIN 145

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK---- 216
            M+ KAK +GM +T Y   +GL     ++TARD   L +L  + +P   +  +  +    
Sbjct: 146 AMNAKAKSLGMTHTHYAEPTGLS-PRNVSTARDLTRL-LLASQRYPLIGQLSTTAEKTAV 203

Query: 217 FRYRNRIIT--NHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           F +    +   N N L+ N   NI   KTGYT  +G  +         P+  VVM     
Sbjct: 204 FSHPAYALPFRNTNHLIMNPSWNIQLTKTGYTDEAGHCLAMRTTINGKPVTLVVMDAFGK 263

Query: 274 QERDQKALELITSFLEKKTLKHQQTHRK 301
                 A  L T     K +   Q  + 
Sbjct: 264 FTAFADANRLRTWMETGKAVPVPQIAKN 291


>gi|319762474|ref|YP_004126411.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Alicycliphilus
           denitrificans BC]
 gi|330825675|ref|YP_004388978.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Alicycliphilus
           denitrificans K601]
 gi|317117035|gb|ADU99523.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Alicycliphilus
           denitrificans BC]
 gi|329311047|gb|AEB85462.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Alicycliphilus
           denitrificans K601]
          Length = 364

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 99/242 (40%), Gaps = 21/242 (8%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++VID +  ++   K D    P ASLTK+MT  +I E     +L ++  I +++      
Sbjct: 112 ALVIDQDTKEVLLSKNDHAVLPIASLTKLMTGLLISEA----RLPMDEPITITQDDVDTE 167

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   L   T  +  + +   +  S N  + A G    G    F   M+ KA+ +GM  
Sbjct: 168 KGSGSRLTVGTTLSRGELLHLALMSSENRAAHALGRTYPGGLAVFVQRMNAKARLLGMTE 227

Query: 174 TIYKNASGLHDKNQITTARDQAIL------GILLRK--NFPQYYKYFSIRKFRYRNRIIT 225
           T Y   +GL  KNQ ++A D A L        LLR+    P +      R  +Y      
Sbjct: 228 TRYVEPTGLSSKNQ-SSAHDLATLVNVAHGDPLLRELSTSPSHEVAVGQRVLQYN----- 281

Query: 226 NHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N+L+     +I   KTGY   +G  +V   +     ++ V +       R   A  + 
Sbjct: 282 NTNRLVKSPSWDIGLQKTGYISEAGRCLVMQAQVAGRKLIMVFLDSAGKFSRLGDAERVR 341

Query: 285 TS 286
           + 
Sbjct: 342 SW 343


>gi|328914259|gb|AEB55092.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila psittaci 6BC]
          Length = 412

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/277 (20%), Positives = 106/277 (38%), Gaps = 30/277 (10%)

Query: 58  VIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKK-----LHLNTQIPVSKTAA 111
           V+     ++   K  D+  YPAS+TK+ T   I +           +  +    ++  A 
Sbjct: 17  VVHAETGKVLYAKDIDKRIYPASMTKIATALFILKKHPDVLNRFIIVKPDAIASITPQAK 76

Query: 112 TQ------------NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            Q            +   + L+ K   +      AL+  SAND + A     SGS  +F 
Sbjct: 77  KQSGYRSPPHWLETDGVTIQLQNKEEVSGWDLFHALLICSANDAANALAIACSGSVVEFM 136

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             +++  ++IG  +T + N  GLH  N  TTA D   +     K  P + +      ++ 
Sbjct: 137 KQLNDFLREIGCAHTHFNNPHGLHHPNHYTTAGDLTRIMREGLKE-PLFRQVIRTTNYKM 195

Query: 220 ------RNRIITNHNKLL-----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 + RI+   NKL+            G KTG T+++G N+V + +     I+ +  
Sbjct: 196 APTNLSQERILNLTNKLILPGSTYYYPPALGGKTGTTKDAGKNLVFAAKKHGRSIITIAA 255

Query: 269 GMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLS 305
           G     E  +  + L      ++ L+       +  +
Sbjct: 256 GYSVMSELYEDVIALCEGVFNEQPLRRYLIPPTEKYT 292


>gi|302205612|gb|ADL09954.1| putative peptidoglycan synthesis related protein [Corynebacterium
           pseudotuberculosis C231]
          Length = 404

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/281 (20%), Positives = 108/281 (38%), Gaps = 15/281 (5%)

Query: 49  HAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVS 107
            A    + +V D++   +   K    RY PAS+ K +   +  +     +L+L  ++ ++
Sbjct: 89  PANTASAWMVFDLDNGDVIATKDPHGRYRPASVIKALLALVALD-----ELNLKAKVKIT 143

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
              A Q  S +   +   +T EQ +  L+  S ND + A  + + G  K     ++  A 
Sbjct: 144 AEDANQEGSAVGYVDGVEYTNEQLLYGLLLNSGNDAAHALAQRLGGDNKT-LEKVNALAH 202

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN------ 221
            +G  +T   + SGL      T+A D A++     +N P + K  +              
Sbjct: 203 SLGTVDTYAASYSGLDAPGMSTSAHDLALIYSHAWEN-PTFAKMVATEHIELPGNAATPT 261

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-DQKA 280
             + N N L     +  G KTGYT ++    V +       + AV++     Q R  Q+A
Sbjct: 262 FQVWNDNGLFLNDEHGIGGKTGYTDDAHHTFVGAKNIDGRRLAAVILDTTVEQGRPWQQA 321

Query: 281 LELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRT 321
            +LI +       +     ++ ++ S      L        
Sbjct: 322 QKLIDAAYAVPRGEKVGNLKETSIPSQPSPSELPTPPTPEE 362


>gi|229829069|ref|ZP_04455138.1| hypothetical protein GCWU000342_01154 [Shuttleworthia satelles DSM
           14600]
 gi|229792232|gb|EEP28346.1| hypothetical protein GCWU000342_01154 [Shuttleworthia satelles DSM
           14600]
          Length = 334

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/269 (22%), Positives = 110/269 (40%), Gaps = 25/269 (9%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHL 100
           ++ A+        S++VI+     +   KQ   + YPAS+TK++T        Q     L
Sbjct: 72  VNTATNSQGSAFQSALVINETSGHVLYSKQANRKAYPASMTKVLTFLTAMRCGQ-----L 126

Query: 101 NTQIPVSKTAAT-QNPSKL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
           +  + VS+ A      S +  L+     + ++ + A+I  S ND +    E + GS + F
Sbjct: 127 SDTLTVSENALRVMEGSTMAGLRAGDQISLQEALYAMILPSGNDAAITIAEGLGGSTEHF 186

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           A  M+  A  IG  +T Y   +GLHD N  TTA D  ++     K +P +    S +   
Sbjct: 187 AEEMNETAASIGATHTHYVTVNGLHDDNHYTTANDMYLIFHEALK-YPIFRDIISSKTHT 245

Query: 219 Y---------RNRIITNHNKLLN------KMHNIDGIKTGYTRNSGFNIVTSLRY-KDDP 262
                     R     N N+ L           + G KTG T  +G  +V   +  + + 
Sbjct: 246 GSFQSSGGLKRTLTWKNTNRYLQGSIQSPSDMTVVGGKTGTTDQAGACLVLLSKNARGEE 305

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKK 291
           I++++          ++   L+  + + +
Sbjct: 306 IISIIFKADNHAALYKQMNHLLEVYGQNR 334


>gi|167586734|ref|ZP_02379122.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ubonensis Bu]
          Length = 366

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 59/249 (23%), Positives = 103/249 (41%), Gaps = 14/249 (5%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            +  A     + V+D N  +    K      P AS+TK+MT  ++ +     KL L  QI
Sbjct: 105 PDALALRSSVAYVVDQNSGEPLFDKNSHAVVPIASITKLMTAMVVLDS----KLPLTDQI 160

Query: 105 PVSKTAATQN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            V+         +   L   +  + E  +   +  S N  + +   +  G    F   M+
Sbjct: 161 EVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAASMSRYYPGGRPAFVAAMN 220

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY---- 219
            KAK +GM +T ++N++GL  +N +++ARD   +     + +P   K+ + R +      
Sbjct: 221 AKAKALGMADTHFENSTGLSSQN-VSSARDLVKMVNAAYQ-YPLIRKFSTDRSYEVYTGK 278

Query: 220 RNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           RN    + N L+  N   +I   KTG+   +G  +V      D P+V V++       R 
Sbjct: 279 RNLAYNSTNALIRGNNSWDIGLQKTGFINEAGECLVMQATIHDRPMVIVLLDSFGKYSRF 338

Query: 278 QKALELITS 286
             A  L   
Sbjct: 339 ADAARLRNW 347


>gi|213028272|ref|ZP_03342719.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 239

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 12/203 (5%)

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND   A  +F +GS+  F  LM++    +G++NT ++   GL    Q ++ARD A+
Sbjct: 2   LQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMAL 61

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTS 255
           +G  L ++ P  Y  +  ++F +      N N LL     N+DGIKTG+T  +G+N+V S
Sbjct: 62  IGQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLVAS 121

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITS---FLEK-KTLKHQQTHRKD-------NL 304
                  +++ VMG  T + R+ ++ +L+T    F E    LK  +    +       + 
Sbjct: 122 ATEGQMRLISAVMGGRTYKGRETESKKLLTWGFRFFETVNPLKAGKEFASEPAWFGNTDR 181

Query: 305 SSTSLKKSLMIKKLKRTYSQFKK 327
           +S  + K + +   +      K 
Sbjct: 182 ASLGVDKDVYLTIPRGRMKDLKA 204


>gi|125717597|ref|YP_001034730.1| DD-carboxypeptidase [Streptococcus sanguinis SK36]
 gi|125497514|gb|ABN44180.1| DD-carboxypeptidase, putative [Streptococcus sanguinis SK36]
          Length = 451

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 133/301 (44%), Gaps = 45/301 (14%)

Query: 24  IQRNIQLMGKILFLSIIMISM-ASELHAKPKY--------------SSIVIDVNKNQMTG 68
           +++ + L+G +   S+  ++  A EL    K               SS+VID +   +  
Sbjct: 1   MKKKLLLLGIVFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPKSSLVIDGSTGDVVW 60

Query: 69  FKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEK 123
               DE R PAS++K+MTLY++FE ++  K+   T I  +     TA     S   +   
Sbjct: 61  EDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQATANIYEISNNKIVAG 120

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNAS-- 180
             +T  + I   I  S+N  +     ++S ++   F   M+ KA+++GM NT + NAS  
Sbjct: 121 VDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGA 180

Query: 181 ------GLHDKNQI-------TTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NR 222
                 G ++           TTARD AIL      + P+   Y +  K   +       
Sbjct: 181 AAISFKGYYNPQNYDNTLSNQTTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGTPYEE 240

Query: 223 IITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
               +N  L      +  +DG+KTG + N  FN + +++  D  ++AV+MG+    ++D 
Sbjct: 241 TFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDWSDQDG 300

Query: 279 K 279
           +
Sbjct: 301 E 301


>gi|229132169|ref|ZP_04261027.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
 gi|228651316|gb|EEL07293.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
          Length = 407

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/284 (24%), Positives = 119/284 (41%), Gaps = 21/284 (7%)

Query: 59  IDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     M   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 34  IDAKTGDMLYDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 88

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ +AK++G +++ 
Sbjct: 89  YQIEFHPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGAKDSH 148

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS----IRKFRYRNRIITNHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  +          +   I N +   
Sbjct: 149 FVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSTQTVSIFNKSTYF 207

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I+ VVM     +  E  ++  E       
Sbjct: 208 EN-PYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMAEYSFGQFT 266

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           K+T+      HQ+    +    + L+KS  +   K      K  
Sbjct: 267 KQTVLDKHSWHQKAKYLNKDVDSELEKSAELMLKKDEGKNIKTA 310


>gi|227832361|ref|YP_002834068.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453377|gb|ACP32130.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 613

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/294 (20%), Positives = 120/294 (40%), Gaps = 20/294 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + +V D++  ++   K    RY PAS+ K +   ++ E     +L L+ +I  +   A
Sbjct: 297 ASAWMVSDLDTGEIIAMKDPNGRYRPASIIKALLALVVIE-----ELPLDQRITATLDDA 351

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S + L     +T EQ +  L+  S ND + A  + + G E+     ++ KA++IG 
Sbjct: 352 SVEGSAVGLGPDGVYTVEQLLQGLLMASGNDAAHALAQAVGGDEEA-LEKVNAKAQEIGT 410

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY------RNRIIT 225
           ++T+  + SGL      T+A D +++      N   + +        +          + 
Sbjct: 411 RSTVAASYSGLDAAGMSTSAADISLIYRAAFAN-DTFARIVDTEHVDFPGWGEMPGYELW 469

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE--RDQKALEL 283
           N N L     +  G KTGYT ++    V ++      + AV++           ++A  L
Sbjct: 470 NDNGLFLNDPDGIGGKTGYTEDAHHTFVGAINRDGRRLQAVLLDTTVEHGFRAWEQAQML 529

Query: 284 ITSFLEKKTLKHQQTHRKDNLSS--TSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           +    + +          D+ ++      +S++   +  T S     +A A S+
Sbjct: 530 LDEASDVRP--GDGVGLVDDFAAGKEEPSESVLTSPVPTTPSAPATSEATAGSS 581


>gi|153811304|ref|ZP_01963972.1| hypothetical protein RUMOBE_01696 [Ruminococcus obeum ATCC 29174]
 gi|149832431|gb|EDM87515.1| hypothetical protein RUMOBE_01696 [Ruminococcus obeum ATCC 29174]
          Length = 334

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 111/249 (44%), Gaps = 25/249 (10%)

Query: 57  IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-QN 114
           +++D+    +   K   +  YPAS+TK++T  + F     K  +++  + +++   T + 
Sbjct: 88  VLLDLKDKSVLYAKGAYDKVYPASITKIITALLAF-----KNSNMDDVVTITQENITLEE 142

Query: 115 PSKL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
            S++   +     T +Q +  L+  S ND ++A    + GS + F  +M+  A ++G   
Sbjct: 143 GSQVVGFQVGDQVTMDQLVHCLLVYSGNDAASAIATHVGGSTENFVAMMNEYAAQLGCTG 202

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR---------NRII 224
           T + N  GL D+N  TT  D  ++     K +P++ +   +  +            +  +
Sbjct: 203 THFTNPHGLQDENHYTTPYDIYLMLKEALK-YPEFTEITQLPSYTVTFQHSDGSEDSVSL 261

Query: 225 TNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYK-DDPIVAVVMGMPTSQERD 277
           T  +  L    N      + G KTG T ++G  +    +    +P V++VMG  T +   
Sbjct: 262 TATDHYLTGEANAPKGVTVLGGKTGTTSSAGNCLALLCQNSYGEPYVSIVMGASTKELLY 321

Query: 278 QKALELITS 286
           Q+   L+ +
Sbjct: 322 QQMTSLLEN 330


>gi|229166209|ref|ZP_04293969.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
 gi|228617307|gb|EEK74372.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
          Length = 407

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/284 (24%), Positives = 119/284 (41%), Gaps = 21/284 (7%)

Query: 59  IDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     M   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 34  IDAKTGDMLYDKNANHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 88

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ +AK++G +++ 
Sbjct: 89  YQIEFQPGETINRNTALMILMVLSANDVSYAIAEHIGGSVENFANMMNERAKQLGAKDSH 148

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS----IRKFRYRNRIITNHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  +          +   I N +   
Sbjct: 149 FVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSTQTVSIFNKSTYF 207

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I+ VVM     +  E  ++  E       
Sbjct: 208 EN-PYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMTEYSFGQFT 266

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           K+T+      HQ+T   +    + L+ S  +   K      K  
Sbjct: 267 KQTVLDKHSWHQKTTYLNKDVDSELENSAELMLKKDEGKNVKTA 310


>gi|237809560|ref|YP_002894000.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Tolumonas
           auensis DSM 9187]
 gi|237501821|gb|ACQ94414.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Tolumonas
           auensis DSM 9187]
          Length = 413

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 119/262 (45%), Gaps = 15/262 (5%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHL 100
           I M S        ++++++ N  +M   K    R P AS+TK+MT  ++ +     KL +
Sbjct: 157 IPMTSGSPFLDSNAALIMNANTGRMVYGKNAARRTPIASITKLMTAMVVLDA----KLSM 212

Query: 101 NTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           +  I ++     +   S   L+  T  +    +   +  S N  + +      G +  F 
Sbjct: 213 DQPITITNADVDRVKRSSSRLEIGTTLSRYDTMWLALMSSENRAAHSLARTYPGGKGAFI 272

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             M+ KA+ +GM+NT++ +++GL +KN  +TA D A++     + +PQ  +  +  +   
Sbjct: 273 AAMNRKARALGMRNTVFYDSTGL-NKNNTSTAADLALMVQAAYR-YPQIRQLSTSTEHDI 330

Query: 220 -----RNRIITNHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                R     N N L+ +   +I+  KTGY + +G  +V     ++ P+V V +     
Sbjct: 331 ISASGRQLHYQNSNALVREGAWDIELSKTGYIKEAGRCLVMVADVQNKPMVMVFLNAGAP 390

Query: 274 QERDQKALELITSFLEKKTLKH 295
             R   A  L  S+LE++ +K 
Sbjct: 391 SGRINDARNL-KSWLERQPVKQ 411


>gi|91784256|ref|YP_559462.1| murein-DD-endopeptidase [Burkholderia xenovorans LB400]
 gi|91688210|gb|ABE31410.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Burkholderia xenovorans LB400]
          Length = 389

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 100/240 (41%), Gaps = 17/240 (7%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + VID N  +    K      P AS+TK+MT  ++ +     K  +  QI V+       
Sbjct: 138 AYVIDQNSGEPLFDKNSRAVVPIASITKLMTAMVVLDS----KEPMTDQIEVTDEDRDYE 193

Query: 115 ---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S+  L   +  + E  +   +  S N  + A   +  G    F   M+ KAK++GM
Sbjct: 194 KNTGSR--LSVGSVLSREDMLHIALMASENRAAAALSRYFPGGRPAFLAAMNAKAKQLGM 251

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNH 227
            +T ++N +GL  +N +++ARD   +     + +P   ++ +   +      R+    + 
Sbjct: 252 TDTHFENPTGLTSQN-VSSARDLVKMVNAAYQ-YPLIRRFSTDHSYEVYTGKRSLAYNST 309

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           N L+ N   +I   KTG+   +G  +V        P++ V++       R   A  L T 
Sbjct: 310 NALVRNPTWDIGLQKTGFINEAGECLVMQATIHGRPMIMVLLDSSGKYSRFADATRLRTW 369


>gi|238798922|ref|ZP_04642387.1| D-alanyl-D-alanine endopeptidase [Yersinia mollaretii ATCC 43969]
 gi|238717232|gb|EEQ09083.1| D-alanyl-D-alanine endopeptidase [Yersinia mollaretii ATCC 43969]
          Length = 313

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 98/242 (40%), Gaps = 15/242 (6%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S++V+D+  N+       DE    AS+TK+MT  ++ +     KL L+  I V       
Sbjct: 48  SAMVVDLQTNKAIYANNADEVVPIASITKLMTAMVVLDA----KLPLDEIISVDIHQTKE 103

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  ++  +  + +  +L  +  S N  + +      G    F   M+ KAK +GM 
Sbjct: 104 MKGVFSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNAKAKSLGMT 163

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT--N 226
            T Y   +GL   N ++TARD   L ++  K +P   +  +  +    FR  N  +   N
Sbjct: 164 KTRYVEPTGLSI-NNVSTARDLTKL-LIATKQYPLIGQLSTTTEKMATFREPNYTLPFRN 221

Query: 227 HNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+     NI   KTG+T  +G  +       + P+  VV+           A  L +
Sbjct: 222 TNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPVALVVLDAFGKYTHFADANRLRS 281

Query: 286 SF 287
             
Sbjct: 282 WM 283


>gi|324996133|gb|EGC28044.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK678]
          Length = 422

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 138/348 (39%), Gaps = 47/348 (13%)

Query: 31  MGKILFLSIIMISMASELHAK-----PKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMM 84
           M ++    ++++ M +   A         S++ +D    ++   K    P    S+T ++
Sbjct: 1   MKRLFLCLLVLVGMTTSKVAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLL 60

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           T+Y+++E +    L  +T + +S  A    +  N S + L+ K  +  +  I A +  S+
Sbjct: 61  TVYLVYEAIDRGDLTADTYVDISDYAYNLTSNPNISNVPLEAK-RYKVKDLIAASLMSSS 119

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----------------- 183
           N  + A  E + GSE+ F  +M  K K+ G+ +    N++GL+                 
Sbjct: 120 NSATIALAEKVGGSEENFVQMMKAKLKEWGITDATVVNSTGLNTLLLEYATEETEYSTSA 179

Query: 184 -------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL----N 232
                  D     +A D A++   L  +FPQ     S    +     + N+N +L    N
Sbjct: 180 STAKKSKDTENKFSAYDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSN 239

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELIT--- 285
               +DG+K G +   G + V +       ++ VV+ +         R      L+    
Sbjct: 240 FRSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVLDVDQTDGDPYARFVATASLMNYVS 299

Query: 286 -SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
            +F +   +   + + K + +    K+  +     + ++  ++I  +A
Sbjct: 300 QNFTQTTIVAEGEAYNKSHSTVIDGKQKTVPAVASKDFTIIERIANQA 347


>gi|224475783|ref|YP_002633389.1| penicillin binding protein 4 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420390|emb|CAL27204.1| penicillin binding protein 4 [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 429

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 67/338 (19%), Positives = 135/338 (39%), Gaps = 48/338 (14%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDV-----------------NKNQM 66
           +++ I L   I F S I+   +      P  + +  +                     Q+
Sbjct: 1   MKKIILLTLLIFFASTIITPFSEADTNTPSPAQVANEYGYNISDDFNPEGAVNISQTGQV 60

Query: 67  TG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP----SKLYLK 121
              +  D+  YPAS+TK+MT+Y+  E +++ KL LN ++ +++     +     S   L 
Sbjct: 61  LYDYHMDKKWYPASMTKLMTMYLTLEAVKAHKLSLNDKVKITEDDYRMSTLPKLSNTKLY 120

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
               +T ++ +   ++ S+N  +    + +SG+   F   M+ KAK++GM  T Y N +G
Sbjct: 121 PGETYTIKELLQITVSASSNAAALILAKKVSGNTSDFTDKMNKKAKELGMTKTHYVNPTG 180

Query: 182 LHD-----------KNQIT---TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
             +           KN+++   +A+D AIL   + ++ P+   +                
Sbjct: 181 AENNLLQDFAPKKYKNEMSSRASAKDYAILSQRVIQDTPKILYFTKQLAPTQHGVTYYTF 240

Query: 228 NKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------SQERD 277
           N  L      +   DG+KTG +  + +N   + +     I   +MG          +ER+
Sbjct: 241 NWSLEGAELGLKGTDGLKTGSSDIADYNHTITTKRDGFRIDQAIMGAGDFKHLGGEKERN 300

Query: 278 QKALELITSFLEKKTLKH--QQTHRKDNLSSTSLKKSL 313
           +    ++    ++        +  +K N     +KK L
Sbjct: 301 KMGNSIMNRSFDQYKYVKILSKGEQKINGKKYYVKKDL 338


>gi|169343528|ref|ZP_02864527.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens C str. JGS1495]
 gi|169298088|gb|EDS80178.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           perfringens C str. JGS1495]
          Length = 423

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 73/321 (22%), Positives = 133/321 (41%), Gaps = 29/321 (9%)

Query: 31  MGKILFLSIIMISMASELHAKPKYS--SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLY 87
           +   LF  I     A+E+         ++ +D    ++   K  DE  YPAS TK+MT  
Sbjct: 16  LSVSLFTPIKATVQAAEISQPNIVGKYAVTLDYETGEIIYAKGIDEKAYPASTTKVMTSL 75

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-----YLKEKTYFTTEQGILALITRSAND 142
           +  E+        N   P +  A  Q P  L      +           + AL+  SAND
Sbjct: 76  LFAEHASK-----NDSFPYTADAKAQQPYTLNNSFGPIPVGEGMNANDLMKALLMFSAND 130

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
            +    + ++GS +KF+++M+N+ KK+G++NT +   +GLH+ +  +TA D A++     
Sbjct: 131 AAAVIADGVAGSAEKFSVMMNNEVKKLGLKNTHFVTPNGLHNDDHYSTAYDLAVILQNAY 190

Query: 203 KNFPQYYKYFSIR----KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
           KN P   +  +++        +  ++ N NK L  ++   G KTG+T  +G  +V+    
Sbjct: 191 KN-PWVSETMALKDSDITVNGKKVLLENRNKELG-INGNIGGKTGFTTPAGRCLVSVYER 248

Query: 259 KDDPIVAVVMGMPTSQER---DQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMI 315
               I+  V+      +         ++I        + + +     +            
Sbjct: 249 NGRKIIGAVLNSQYDAKDEIVFNDMNKIIDYSYSVDKVPYIKAGTTIDTIPVEY------ 302

Query: 316 KKLKRTYSQFKKIDAKAHSTQ 336
            KL R +   KKID    +T+
Sbjct: 303 -KLFRWFGPTKKIDVPFVATE 322


>gi|170703460|ref|ZP_02894228.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ambifaria IOP40-10]
 gi|170131628|gb|EDT00188.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ambifaria IOP40-10]
          Length = 370

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 101/249 (40%), Gaps = 14/249 (5%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            +  A     + V+D N  +    K      P AS++K+MT  ++ +     K  +  Q+
Sbjct: 109 PDALALRSSVAYVVDQNTGEPLFDKNSHAVVPIASISKLMTAMVVLDA----KSPMTDQL 164

Query: 105 PVSKTAATQN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            V+         +   L   +  + E  +   +  S N  + A   +  G    F   M+
Sbjct: 165 EVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMN 224

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY---- 219
            KAK +GM +T ++N++GL   N +++ARD   +     + +P   ++ + R +      
Sbjct: 225 AKAKSLGMNDTHFENSTGLSSSN-VSSARDLVKMVNAAYQ-YPMIRQFSTDRTYDVYTGK 282

Query: 220 RNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           RN +  + N L+  N   +I   KTG+   +G  +V        P+V V++       R 
Sbjct: 283 RNLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGRPMVMVLLDSFGKYSRF 342

Query: 278 QKALELITS 286
             A  L   
Sbjct: 343 ADASRLRNW 351


>gi|15601625|ref|NP_233256.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121586429|ref|ZP_01676217.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae 2740-80]
 gi|121726497|ref|ZP_01679761.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae V52]
 gi|147672119|ref|YP_001215209.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae O395]
 gi|153216793|ref|ZP_01950617.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae 1587]
 gi|153800546|ref|ZP_01955132.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae MZO-3]
 gi|153817027|ref|ZP_01969694.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae NCTC 8457]
 gi|153822999|ref|ZP_01975666.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae B33]
 gi|153825402|ref|ZP_01978069.1| D-alanyl-D-alanine carboxypeptidase family protein [Vibrio cholerae
           MZO-2]
 gi|153828070|ref|ZP_01980737.1| D-alanyl-D-alanine carboxypeptidase family protein [Vibrio cholerae
           623-39]
 gi|227812436|ref|YP_002812446.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae M66-2]
 gi|229505985|ref|ZP_04395494.1| murein-DD-endopeptidase [Vibrio cholerae BX 330286]
 gi|229510158|ref|ZP_04399638.1| murein-DD-endopeptidase [Vibrio cholerae B33]
 gi|229514293|ref|ZP_04403754.1| murein-DD-endopeptidase [Vibrio cholerae TMA 21]
 gi|229517711|ref|ZP_04407156.1| murein-DD-endopeptidase [Vibrio cholerae RC9]
 gi|229526636|ref|ZP_04416040.1| murein-DD-endopeptidase [Vibrio cholerae bv. albensis VL426]
 gi|229528279|ref|ZP_04417670.1| murein-DD-endopeptidase [Vibrio cholerae 12129(1)]
 gi|229605517|ref|YP_002876221.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae MJ-1236]
 gi|254224796|ref|ZP_04918412.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae V51]
 gi|254284501|ref|ZP_04959468.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae AM-19226]
 gi|254850028|ref|ZP_05239378.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae MO10]
 gi|255746384|ref|ZP_05420331.1| murein-DD-endopeptidase [Vibrio cholera CIRS 101]
 gi|262158262|ref|ZP_06029379.1| murein-DD-endopeptidase [Vibrio cholerae INDRE 91/1]
 gi|262169138|ref|ZP_06036831.1| murein-DD-endopeptidase [Vibrio cholerae RC27]
 gi|262190555|ref|ZP_06048797.1| murein-DD-endopeptidase [Vibrio cholerae CT 5369-93]
 gi|297580128|ref|ZP_06942055.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae RC385]
 gi|298499649|ref|ZP_07009455.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae MAK 757]
 gi|9658302|gb|AAF96768.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549407|gb|EAX59436.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae 2740-80]
 gi|121631092|gb|EAX63469.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae V52]
 gi|124114127|gb|EAY32947.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae 1587]
 gi|124123990|gb|EAY42733.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae MZO-3]
 gi|125622859|gb|EAZ51177.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae V51]
 gi|126512437|gb|EAZ75031.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae NCTC 8457]
 gi|126519469|gb|EAZ76692.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae B33]
 gi|146314502|gb|ABQ19042.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae O395]
 gi|148876479|gb|EDL74614.1| D-alanyl-D-alanine carboxypeptidase family protein [Vibrio cholerae
           623-39]
 gi|149740948|gb|EDM55025.1| D-alanyl-D-alanine carboxypeptidase family protein [Vibrio cholerae
           MZO-2]
 gi|150425286|gb|EDN17062.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae AM-19226]
 gi|227011578|gb|ACP07789.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae M66-2]
 gi|227015517|gb|ACP11726.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae O395]
 gi|229334641|gb|EEO00127.1| murein-DD-endopeptidase [Vibrio cholerae 12129(1)]
 gi|229336794|gb|EEO01812.1| murein-DD-endopeptidase [Vibrio cholerae bv. albensis VL426]
 gi|229345747|gb|EEO10720.1| murein-DD-endopeptidase [Vibrio cholerae RC9]
 gi|229348273|gb|EEO13231.1| murein-DD-endopeptidase [Vibrio cholerae TMA 21]
 gi|229352603|gb|EEO17543.1| murein-DD-endopeptidase [Vibrio cholerae B33]
 gi|229356336|gb|EEO21254.1| murein-DD-endopeptidase [Vibrio cholerae BX 330286]
 gi|229372003|gb|ACQ62425.1| murein-DD-endopeptidase [Vibrio cholerae MJ-1236]
 gi|254845733|gb|EET24147.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae MO10]
 gi|255736138|gb|EET91536.1| murein-DD-endopeptidase [Vibrio cholera CIRS 101]
 gi|262022419|gb|EEY41127.1| murein-DD-endopeptidase [Vibrio cholerae RC27]
 gi|262029944|gb|EEY48591.1| murein-DD-endopeptidase [Vibrio cholerae INDRE 91/1]
 gi|262033566|gb|EEY52062.1| murein-DD-endopeptidase [Vibrio cholerae CT 5369-93]
 gi|297535774|gb|EFH74608.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae RC385]
 gi|297541630|gb|EFH77681.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae MAK 757]
          Length = 316

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/243 (25%), Positives = 105/243 (43%), Gaps = 15/243 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTA 110
             S++VID+  N++      D  +  AS+TK+MT  +  +     KL ++ ++P++ K A
Sbjct: 47  ANSALVIDLKTNEIIYSNNPDAVKPIASVTKLMTAIVTLDA----KLPMDAKLPITIKDA 102

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                    +K  +  + +  +L  +  S N  + +      G  K F   M+ KAK +G
Sbjct: 103 KEMKGVHSRVKIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALG 162

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------NRII 224
           M+NT +   +GL  KN ++TARD  +L     K +P   K  +  K              
Sbjct: 163 MKNTRFVEPTGLSAKN-VSTARDLVVLLKA-SKKYPLLGKLSATDKKTVTFSKPRYTLDF 220

Query: 225 TNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            N N+L++  +  ID  KTG+T  +G  +V   +     +  VV+           A  L
Sbjct: 221 RNTNRLVHNDNWKIDLTKTGFTNAAGHCLVMRTQMGRRQVAFVVLDTKGKLSPVGDANRL 280

Query: 284 ITS 286
            T 
Sbjct: 281 RTW 283


>gi|118398512|ref|XP_001031584.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila]
 gi|89285915|gb|EAR83921.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila SB210]
          Length = 617

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 109/278 (39%), Gaps = 41/278 (14%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLN-TQIPVSKTA 110
             S  V++ N  Q+         R  ASLTK+MTLY+  + +Q+  +    T + VSK A
Sbjct: 331 AESWAVLNANNGQILFGNNHFIIRQMASLTKIMTLYVSLKVIQALDISPFRTYVEVSKKA 390

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS------------------ 152
           A+ N +   L E    +    +  ++  S ND +TA  E +                   
Sbjct: 391 ASMNGTSARLIEGDRLSLWDLMHGMMLPSGNDAATALAENLGVFLYYQSEEYKLQYQQNP 450

Query: 153 -----------GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
                       S+  F   M+  A  + + NT + N +GL +    +TA D A L   L
Sbjct: 451 QQFQNEKFRVKNSQGYFINQMNKYAHNLQLNNTHFANPTGLVNNFNRSTAADLAKLSYHL 510

Query: 202 RKN------FPQYYKYFSIRKFRYRNR--IITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            K           Y +  I     + R  I  N NKLL   H   G+KTG T  +G  + 
Sbjct: 511 IKEEQVKKIVECKYHFAQIYMNNNKKRSVIFENTNKLL--SHGYSGLKTGITTAAGPCLS 568

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
              +     ++ +++   + ++R      L++  + ++
Sbjct: 569 AWYKDDQVNLIIILLNSSSMEQRWVDTQNLVSCVINQQ 606


>gi|329942386|ref|ZP_08291196.1| D-alanyl-D-alanine carboxypeptidase family protein [Chlamydophila
           psittaci Cal10]
 gi|332287027|ref|YP_004421928.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila psittaci 6BC]
 gi|325506477|gb|ADZ18115.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila psittaci 6BC]
 gi|328815296|gb|EGF85284.1| D-alanyl-D-alanine carboxypeptidase family protein [Chlamydophila
           psittaci Cal10]
          Length = 398

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/277 (20%), Positives = 106/277 (38%), Gaps = 30/277 (10%)

Query: 58  VIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKK-----LHLNTQIPVSKTAA 111
           V+     ++   K  D+  YPAS+TK+ T   I +           +  +    ++  A 
Sbjct: 3   VVHAETGKVLYAKDIDKRIYPASMTKIATALFILKKHPDVLNRFIIVKPDAIASITPQAK 62

Query: 112 TQ------------NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            Q            +   + L+ K   +      AL+  SAND + A     SGS  +F 
Sbjct: 63  KQSGYRSPPHWLETDGVTIQLQNKEEVSGWDLFHALLICSANDAANALAIACSGSVVEFM 122

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             +++  ++IG  +T + N  GLH  N  TTA D   +     K  P + +      ++ 
Sbjct: 123 KQLNDFLREIGCAHTHFNNPHGLHHPNHYTTAGDLTRIMREGLKE-PLFRQVIRTTNYKM 181

Query: 220 ------RNRIITNHNKLL-----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                 + RI+   NKL+            G KTG T+++G N+V + +     I+ +  
Sbjct: 182 APTNLSQERILNLTNKLILPGSTYYYPPALGGKTGTTKDAGKNLVFAAKKHGRSIITIAA 241

Query: 269 GMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLS 305
           G     E  +  + L      ++ L+       +  +
Sbjct: 242 GYSVMSELYEDVIALCEGVFNEQPLRRYLIPPTEKYT 278


>gi|251781774|ref|YP_002996076.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242390403|dbj|BAH80862.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|323126581|gb|ADX23878.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 393

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 80/359 (22%), Positives = 152/359 (42%), Gaps = 57/359 (15%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHA-------------KPKYSSIVIDVNKNQMTGFK 70
           I+R   ++  ++   I+ +S A ++               +PK +SIV+D N + +    
Sbjct: 2   IKRIALVIFTVMCFLIMPVSHAEDIMDITRQAGYTISEVNRPK-ASIVVDANTSDILWQD 60

Query: 71  Q-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTY 125
             D PR PAS++KM TLY++FE L   K+ ++T +  ++T    A     S   +     
Sbjct: 61  NIDIPRDPASMSKMFTLYVLFEELAKGKITMDTTVTATETDQAIAKIYEISNNNIVAGVA 120

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLHD 184
           +     I      S+N  +     ++S ++   F   ++  AKK+GM NT + NASG   
Sbjct: 121 YPIRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRINATAKKLGMTNTHFSNASGAAA 180

Query: 185 K---------------NQITTARDQAILGILLRKNFPQYYKYFS------------IRKF 217
           +                 ITTARD A L     K +PQ   + +              +F
Sbjct: 181 QAFQGYYNPTKYDLSAANITTARDLAKLLYAFLKKYPQIIDFTNQSVVHTMVGTPYEEEF 240

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
              N  + N N+    M  +DG+KTG + ++ FN + + +  +  ++ +VMG+    +++
Sbjct: 241 HTYNHSLPN-NQF--GMEGVDGLKTGSSPSAAFNAMVTAKRGNTRLITIVMGVGDWSDQN 297

Query: 278 QKALE--LITSFLEK-----KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKID 329
            +      + +  EK     K+L      + + L     K++L  +   +    +  ++
Sbjct: 298 GEFYRHPFVNALTEKGFSDSKSLTKAARKKLEKLVPQKKKENLPKQHRTKPAKNYSTLE 356


>gi|325277519|ref|ZP_08143117.1| D-alanyl-D-alanine endopeptidase [Pseudomonas sp. TJI-51]
 gi|324097346|gb|EGB95594.1| D-alanyl-D-alanine endopeptidase [Pseudomonas sp. TJI-51]
          Length = 312

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 106/241 (43%), Gaps = 15/241 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAAT 112
           S+++ID+N NQ       +   P AS+TK+MT  ++ +     KL ++  + ++      
Sbjct: 49  SALLIDLNTNQELYSNHADRVVPIASVTKLMTAMVVLDA----KLPMDEMLTMTIANNPE 104

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  ++  +     + +L  +  S N  + +      G    F   M+ KA+ +GM 
Sbjct: 105 MKGVYSRVRPGSQLNRRETLLITLMSSENRAANSLANAYPGGYPAFIKAMNAKARSLGMA 164

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRII--TN 226
           +T Y   +GL  +N ++TARD + L +  RK +P   +  + R+    FR  N  +   N
Sbjct: 165 HTRYVEPTGLSTQN-VSTARDLSKLLMASRK-YPMLSELSTTREKTVAFRKPNYTLGFRN 222

Query: 227 HNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            + L+NK   +I   KTG+T  +G  +V   R  + P+  V++           A  L  
Sbjct: 223 TDHLVNKSNWDIKLTKTGFTNEAGHCLVLLTRMDNRPVAMVILDAFGKYTHFADASRLRQ 282

Query: 286 S 286
            
Sbjct: 283 W 283


>gi|322390982|ref|ZP_08064488.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis ATCC 903]
 gi|321142357|gb|EFX37829.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis ATCC 903]
          Length = 413

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 75/329 (22%), Positives = 135/329 (41%), Gaps = 30/329 (9%)

Query: 28  IQLMGKILFLSIIM--ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMM 84
           +  +  IL L  +   + +A EL   P  S+I ++ +  ++   K  E  R    L+ ++
Sbjct: 6   LSFLTFILLLCSLPYQVVLADELDL-PAQSAIAVEADTGKILYEKDSEKKRDVGGLSTLL 64

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           T Y+IFE +  KKL L   I +S+ A        +     E   +T +Q + AL+  +++
Sbjct: 65  TTYLIFEAIHEKKLSLKDPIKLSEKALALNDIEGAGTLPMEANQYTVDQLLTALLVGNSS 124

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-----------DKNQITT 190
             + A  E + GSEK F   M  K  + G+Q+    NA+GL+           +     +
Sbjct: 125 TAALALAEKVGGSEKSFVEKMKQKLSEWGIQSPHLINATGLNTQTINGDPDGKEDENQLS 184

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIKTGYTR 246
           A D A++   L ++FP+  KY S     + N  I N N +L  M      +DG++   + 
Sbjct: 185 AYDIAVIAKHLLQDFPEVTKYTSKPTALFSNTQIENPNLMLEGMPNYRSGVDGLRVSNST 244

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKTLKHQQT 298
             G     S       ++ VV+G+         R      L+      F+    +K    
Sbjct: 245 KGGITFAASTTQNGIHMITVVLGVEAVDGDPYARFVATSSLMNYVVRTFVSSIVVKEGDP 304

Query: 299 HRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
           + K   +    K   ++   K+ +   +K
Sbjct: 305 YGKSKATIMDGKSETVLAVAKKDFYIVEK 333


>gi|317508309|ref|ZP_07965989.1| D-alanyl-D-alanine carboxypeptidase [Segniliparus rugosus ATCC
           BAA-974]
 gi|316253484|gb|EFV12874.1| D-alanyl-D-alanine carboxypeptidase [Segniliparus rugosus ATCC
           BAA-974]
          Length = 297

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 93/255 (36%), Gaps = 10/255 (3%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSK 96
            ++  S +  +      + +V D++  ++   +     Y PAS  K +   ++   L   
Sbjct: 37  GVVQPSGSEPVPDGAAPAWLVADLDTGEVLAARNPHSHYHPASTIKTLLAIVVLSELDVG 96

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           +  L         AA +     +++     T  + + AL+  S+N  +      + G   
Sbjct: 97  Q-SLTEN--ADDEAADRESIVRFIRPGETHTVRELLEALLMISSNGAANTLARALGGVGP 153

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
                M+ +A ++G  +T     SGL      ++  D A+      +N P + +     +
Sbjct: 154 A-VAKMNAEAARLGANDTRAATPSGLEAPGVSSSPHDLALFFRAALRN-PTFAEIVRQER 211

Query: 217 FRYRN---RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                     + N + LL     + G KTG+T  + +N V +       +V  VM  P S
Sbjct: 212 ATVSGSPAIQLVNRDPLLGSYPGMLGGKTGFTDEAQYNFVGAAARHGRRLVVAVMHNPGS 271

Query: 274 QERDQKALELITSFL 288
               Q+A  L     
Sbjct: 272 YP-AQQARALFDWGF 285


>gi|214090056|gb|ACJ63448.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum sp.
           11a]
          Length = 199

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 80/187 (42%), Positives = 121/187 (64%), Gaps = 1/187 (0%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPAS 79
           ++       L+  ++       +    + A  +Y++IVID N  +       D  RYPAS
Sbjct: 11  ALKRAAQATLLLAVVTGCSTASTTIPAIAASDRYAAIVIDANTGKTLFASNADAQRYPAS 70

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LTKMMTLY++FE +Q+ +++ +T+IPVS  AA + P+K+  +       E   LA+IT+S
Sbjct: 71  LTKMMTLYMLFEAMQAGRMNKDTRIPVSAYAAARPPTKIGFRSGQSIRAEDAALAMITKS 130

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           ANDV+TA GE+I GSE++FA +M+ KA+++GM+NT ++NASGL +  Q TTARD AIL I
Sbjct: 131 ANDVATAVGEYIGGSEERFAQMMTAKARRLGMRNTTFRNASGLPNMAQHTTARDMAILSI 190

Query: 200 LLRKNFP 206
            LR++FP
Sbjct: 191 ALRQHFP 197


>gi|293397160|ref|ZP_06641434.1| penicillin-binding protein 7 [Serratia odorifera DSM 4582]
 gi|291420631|gb|EFE93886.1| penicillin-binding protein 7 [Serratia odorifera DSM 4582]
          Length = 307

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 104/260 (40%), Gaps = 15/260 (5%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
             S    ++ +        S++V+D++ +++   +  DE    AS+TK+MT  +  +   
Sbjct: 24  LASESATALHATQPELASGSAMVVDMSSHKVLYARNPDEVVPIASITKLMTAMVTLDAH- 82

Query: 95  SKKLHLNTQIPVSKTAA-TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
              L L+  + V              ++  +  + +  +L  +  S N  + +      G
Sbjct: 83  ---LPLDEMLTVDIHQTPEMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPG 139

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
               F   M+ KAK +GM  T Y   +GL   N ++TARD + L +L  K +P   +  +
Sbjct: 140 GYNAFISAMNAKAKALGMTRTHYVEPTGLSIHN-VSTARDLSKL-LLATKQYPLIGQLST 197

Query: 214 IRK----FRYRNRIIT--NHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
             +    F+  N  +   N N L+ N   NI   KTG+T  +G  +       +  +  V
Sbjct: 198 TTERMASFKDPNYTLPFRNTNHLVYNPKWNIQLTKTGFTNQAGHCLAMRTMIGNRSVSLV 257

Query: 267 VMGMPTSQERDQKALELITS 286
           V+           A  L + 
Sbjct: 258 VLDAFGKYTHFADASRLRSW 277


>gi|28378040|ref|NP_784932.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           WCFS1]
 gi|28270874|emb|CAD63779.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           WCFS1]
          Length = 412

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/262 (22%), Positives = 113/262 (43%), Gaps = 28/262 (10%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQS 95
           L   + + A+   A    ++ V+D    Q+   +  D+    ASL+K+MTLY++   ++ 
Sbjct: 23  LGCNVAAHATSSKADEVKAAYVMDAKSGQVVYAQNADQKLPIASLSKLMTLYLVERAIEH 82

Query: 96  KKLHLNTQIPVSKT----AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            ++     +P+ K     A +   S + +  K  FT  +   A +  S+N  + A GE++
Sbjct: 83  GQIKWTDAVPIRKNVRKMATSATLSVMPMPAKETFTVRELFAATLVGSSNSGAIALGEYV 142

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN----------------QITTARDQA 195
           +GS  KF  LM+ +A K  + +  + +ASGL + +                 + +AR   
Sbjct: 143 AGSNDKFIKLMNQQAAKWHL-DASFISASGLDNTDLKNYDLKIKGTSDQDQNLVSARAVT 201

Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN------IDGIKTGYTRNSG 249
            +   L   +P   +  + R  +     +    ++L           +DG+KTGYT  +G
Sbjct: 202 TIAQHLIDAYPDVIQVANQRSVKIHKYTVPTSVEILKGAEYYDPRVPVDGLKTGYTNQAG 261

Query: 250 FNIVTSLRYKDDPIVAVVMGMP 271
             +V + R     ++A  +G  
Sbjct: 262 ACLVATYRQNGHRMIATTLGGA 283


>gi|327461601|gb|EGF07932.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK1]
 gi|327473321|gb|EGF18741.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK408]
          Length = 455

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 133/301 (44%), Gaps = 45/301 (14%)

Query: 24  IQRNIQLMGKILFLSIIMISM-ASELHAKPKY--------------SSIVIDVNKNQMTG 68
           +++ + L+G +   S+  ++  A EL    K               SS+VID +   +  
Sbjct: 5   VKKKLLLLGIVFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPKSSLVIDGSTGDVVW 64

Query: 69  FKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEK 123
               DE R PAS++K+MTLY++FE ++  K+   T I  +     TA     S   +   
Sbjct: 65  EDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQATANIYEISNNKIVAG 124

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGL 182
             +T  + I   I  S+N  +     ++S ++   F   M+ KA+++GM NT + NASG 
Sbjct: 125 VDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGA 184

Query: 183 HD---------------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NR 222
                             +  TTARD AIL      + P+   Y +  K   +       
Sbjct: 185 AAVSFKGYYNPQNYDNYASNQTTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGTPYEE 244

Query: 223 IITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
               +N  L      +  +DG+KTG + N  FN + +++ +D  ++AV+MG+    ++D 
Sbjct: 245 TFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKREDQRMIAVIMGVGDWSDQDG 304

Query: 279 K 279
           +
Sbjct: 305 E 305


>gi|134296314|ref|YP_001120049.1| murein-DD-endopeptidase [Burkholderia vietnamiensis G4]
 gi|134139471|gb|ABO55214.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Burkholderia vietnamiensis G4]
          Length = 383

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 99/249 (39%), Gaps = 14/249 (5%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            +  A     + V+D N  +    K      P AS++K+MT  ++ +     K  +  QI
Sbjct: 122 PDALALRSSVAYVVDQNTGEPLFDKNSHAVVPIASISKLMTAMVVLDS----KAPMTDQI 177

Query: 105 PVSKTAATQN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            V+         +   L   +  + E  +   +  S N  + A   +  G    F   M+
Sbjct: 178 EVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMN 237

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR- 222
            KAK +GM +T ++N++GL   N +++ARD   +     + +P   ++ + R +      
Sbjct: 238 AKAKSLGMNDTHFENSTGLSSSN-VSSARDLVKMVNAAYQ-YPLIRQFSTDRTYDVNTGK 295

Query: 223 ---IITNHNKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
              +  + N L+  N   +I   KTG+   +G  +V        P+V V++       R 
Sbjct: 296 RTLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGRPMVMVLLDSFGKYSRF 355

Query: 278 QKALELITS 286
             A  L   
Sbjct: 356 ADASRLRNW 364


>gi|295107786|emb|CBL21739.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162]
          Length = 307

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 103/231 (44%), Gaps = 20/231 (8%)

Query: 56  SIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTA 110
           ++++ V   ++ G    +E  YPAS+TK+MT  +  E L+     L+ +I ++    +  
Sbjct: 53  AVLMQVRGGRVIGEINGEEQMYPASMTKIMTTIVAIENLKD----LDQEITLTNEMFEGL 108

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             Q+ ++   +          +  ++  S  +   A  + I+GSE  F  LM+ KA K+G
Sbjct: 109 YEQDATQAGFQPGETVRAIDLLYGVMLPSGAECCIALADTIAGSEADFVTLMNEKAAKLG 168

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYK--YFSIRKFRYRNRIITN 226
           M  T + + +GLHD N  +T +D A+L     K+  F +  +  Y+S          IT 
Sbjct: 169 MTGTNFCDTTGLHDANHYSTVKDIAVLLKYALKDDTFREIIESPYYSTPGTNIHPDGITF 228

Query: 227 HNKLLNKMHN-------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           ++ +   + +       I G KTGYT  +G  + +         + V  G 
Sbjct: 229 YSTMFKNLSDTAVTDGKIMGGKTGYTGEAGHCLASFAEIDGTEYILVTGGA 279


>gi|255505331|ref|ZP_05345475.3| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
           DSM 14469]
 gi|255268368|gb|EET61573.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
           DSM 14469]
          Length = 326

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 103/252 (40%), Gaps = 25/252 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             +  ++D+++  +   K   E  YPASLTK+MT  +  +Y      +L+  I V + A 
Sbjct: 76  AEAGAMMDLSEENVLYAKNVHERLYPASLTKIMTALVALKYG-----NLDDVITVDEVAL 130

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
             +P  S  YL+    +T  Q I  L+  S ND   A    + GS + F  +M+ +A  I
Sbjct: 131 DIDPESSVCYLELGDQYTLRQLIYGLLIASGNDAGNAIAYHVGGSIENFVAMMNQEAASI 190

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR--------- 220
           G  NT + NA GL D+N  TT  D  ++     K +  +    S + F            
Sbjct: 191 GATNTHFMNAHGLQDENHYTTPYDIYLMFQEALK-YDVFQDAISKQNFTVTYTAGDGEQY 249

Query: 221 NRIITNHNKLLNKMH------NIDGIKTGYTRNSGFNIVTSLRYK-DDPIVAVVMGMPTS 273
            R     +              + G KTG T  +G  +    +    +   +V+M     
Sbjct: 250 ERTWYATSYYFTGEAAAPDGVTVFGGKTGTTDEAGSCLALLSKDAYGNSYFSVIMKSDNK 309

Query: 274 QERDQKALELIT 285
            +  ++  EL++
Sbjct: 310 ADLYEEMNELLS 321


>gi|169827425|ref|YP_001697583.1| hypothetical protein Bsph_1859 [Lysinibacillus sphaericus C3-41]
 gi|168991913|gb|ACA39453.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 292

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 111/240 (46%), Gaps = 21/240 (8%)

Query: 56  SIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKTA 110
           +I+++++ N++   K  E   YPASLTKMMT+ +  E + +    L  +I     +    
Sbjct: 45  AILVNLDDNKVLIDKNSEEVIYPASLTKMMTVLVAIEQIPN----LQEEIVLGNNIFNNL 100

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
              N S          T E  +   +  S  + S    E+I+GSE+KF  LM+ KA+++G
Sbjct: 101 YEANASLAGFLPNEKLTLEDLLYGSMLPSGAEASIGLAEYIAGSERKFVNLMNEKAQQLG 160

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYY--KYFSIRKFRYRNRIITN 226
           M+NT + N +GLH  +  TT +D ++L      N  F Q Y  + +SI+        IT 
Sbjct: 161 MKNTHFMNTTGLHHSDHYTTVKDMSLLLQYALTNDEFRQVYTAERYSIKPTNRHPEGITF 220

Query: 227 HNKLLNKM-------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            NK+   M         I G KTGYT ++G  + +         + V +G      R ++
Sbjct: 221 TNKMFQNMTTRALPGGEILGGKTGYTDDAGLCLASLATINGQEYILVTVGAE-GNSRTEQ 279


>gi|262183779|ref|ZP_06043200.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 406

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/294 (20%), Positives = 120/294 (40%), Gaps = 20/294 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + +V D++  ++   K    RY PAS+ K +   ++ E     +L L+ +I  +   A
Sbjct: 90  ASAWMVSDLDTGEIIAMKDPNGRYRPASIIKALLALVVIE-----ELPLDQRITATLDDA 144

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S + L     +T EQ +  L+  S ND + A  + + G E+     ++ KA++IG 
Sbjct: 145 SVEGSAVGLGPDGVYTVEQLLQGLLMASGNDAAHALAQAVGGDEEA-LEKVNAKAQEIGT 203

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY------RNRIIT 225
           ++T+  + SGL      T+A D +++      N   + +        +          + 
Sbjct: 204 RSTVAASYSGLDAAGMSTSAADISLIYRAAFAN-DTFARIVDTEHVDFPGWGEMPGYELW 262

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE--RDQKALEL 283
           N N L     +  G KTGYT ++    V ++      + AV++           ++A  L
Sbjct: 263 NDNGLFLNDPDGIGGKTGYTEDAHHTFVGAINRDGRRLQAVLLDTTVEHGFRAWEQAQML 322

Query: 284 ITSFLEKKTLKHQQTHRKDNLSS--TSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           +    + +          D+ ++      +S++   +  T S     +A A S+
Sbjct: 323 LDEASDVRP--GDGVGLVDDFAAGKEEPSESVLTSPVPTTPSAPATSEATAGSS 374


>gi|241764854|ref|ZP_04762858.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidovorax
           delafieldii 2AN]
 gi|241365603|gb|EER60333.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidovorax
           delafieldii 2AN]
          Length = 358

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/238 (26%), Positives = 102/238 (42%), Gaps = 21/238 (8%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + VID + +++   K D    P ASLTK+MT  I+ +      L ++  I +++      
Sbjct: 108 AYVIDQDTHEVLLSKNDHAVLPIASLTKLMTGLIVTQAH----LPMDEPITITQDDVDTE 163

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+  L   T  T  + +   +  S N  + A G    G  + F  LM++KA+ IGM +
Sbjct: 164 KGSRSRLSVGTTLTRGEMLHLALMSSENRAAHALGRTYPGGLEAFVALMNSKARSIGMTD 223

Query: 174 TIYKNASGLHDKNQITTARDQAILGILL-----RKNF---PQYYKYFSIRKFRYRNRIIT 225
           T+Y   +GL  +NQ ++ARD A+L  +       + F   P Y      +  ++      
Sbjct: 224 TVYVEPTGLSSRNQ-SSARDLALLVNVAHGDPVMREFSTSPGYEVAVGHKTLQFN----- 277

Query: 226 NHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           N N L+ N   NI   KTGY   +G  +V         ++ V +       R   A  
Sbjct: 278 NTNGLVKNPDWNIGLQKTGYISEAGRCLVMQTHIAGRKLIMVFLDSAGKFSRLGDAQR 335


>gi|300715952|ref|YP_003740755.1| penicillin-binding protein 7 (D-alanyl-D-alanine-endopeptidase)
           [Erwinia billingiae Eb661]
 gi|299061788|emb|CAX58904.1| Penicillin-binding protein 7 (D-alanyl-D-alanine-endopeptidase)
           [Erwinia billingiae Eb661]
          Length = 315

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/258 (22%), Positives = 111/258 (43%), Gaps = 20/258 (7%)

Query: 41  MISMASELHAK-PKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +  +A  +  +    S++++D+N N++      D  R  AS+TK+MT+ +  +      L
Sbjct: 31  LADVAPIVQPQIASGSAMIVDLNTNKVIFASHPDLVRPMASITKLMTVMVTLDAH----L 86

Query: 99  HLNTQ--IPVSKTAATQN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
            ++    + +S T   +   S++ L   +  + +  +L  +  S N  + +      G  
Sbjct: 87  PMDEMLNVDISHTPEMRGVYSRVRL--NSEISRKNMMLLALMSSENRAAASLAHHYPGGY 144

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             F   M+ KA+ +GM +T Y   +GL  +N ++TARD   L ++  K +P   +  +  
Sbjct: 145 DAFIRAMNAKAQSLGMTHTHYVEPTGLSIEN-VSTARDLTKL-LIATKRYPLIGQLSTTH 202

Query: 216 K----FRYRNRIIT--NHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +    F+  N  +   N N L+ +   NI   KTG+T  +G  +V        P+  VVM
Sbjct: 203 EDMAVFKSPNYTLPFRNTNHLVYRQDWNIQLTKTGFTNEAGHCLVMRTVINQRPVALVVM 262

Query: 269 GMPTSQERDQKALELITS 286
                      A  L   
Sbjct: 263 DAFGKYTHFADANRLRDW 280


>gi|255323933|ref|ZP_05365059.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
           tuberculostearicum SK141]
 gi|255299113|gb|EET78404.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
           tuberculostearicum SK141]
          Length = 397

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/295 (18%), Positives = 111/295 (37%), Gaps = 26/295 (8%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + +V D++  ++   K    RY PAS+ K +   ++ + L      L+ ++ V + +A
Sbjct: 92  AAAWMVSDIDSGEIIAMKDPNGRYRPASIIKALLALVVIDELD-----LHQKVEVGEESA 146

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S + +     +T EQ +  L+  S ND + A  + + G E      ++ KA +IG 
Sbjct: 147 QIDGSAVGIGPGGTYTVEQLLQGLLMASGNDAAHALAQELGGDEAT-LRKVNEKAAEIGT 205

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------NRIIT 225
            +T   + SGL      T+A D + +      N P + +        +          + 
Sbjct: 206 NSTYAASYSGLDAPGMSTSAEDISRIYRAAFHN-PTFARIVDTESVDFPGWGDLDGYQLG 264

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE--RDQKALEL 283
           N N L     +  G KTG+T ++    V +L      + AV++           ++A +L
Sbjct: 265 NDNGLFLNDPDGIGGKTGFTDDAHHTFVGALDRHGRRLQAVLLDTTVEHGPRAWEQAQKL 324

Query: 284 ITSFLEKKTLKHQQTHRKDNLSS--TSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
           +            + H  D +      +             +Q +  ++     Q
Sbjct: 325 LHEAY--------KVHPGDGVGQLLADVHSDADSTASPAPDAQAQSANSSLAGVQ 371


>gi|220927973|ref|YP_002504882.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           cellulolyticum H10]
 gi|219998301|gb|ACL74902.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           cellulolyticum H10]
          Length = 406

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 67/270 (24%), Positives = 119/270 (44%), Gaps = 16/270 (5%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTL 86
           I  +  IL  + + +   +        S +++D  + Q+   K       P+ + K+MT 
Sbjct: 7   IVFVALILIFNCLPVFAWTPTEGLTSSSVVLMDTVRGQILFEKNAYAHLSPSVMCKLMTA 66

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            +  E     K  LN ++ +SK AA+     L L     +T E  + A++    ND + A
Sbjct: 67  LVTIE-----KTDLNAKVTISKNAASFKG--LNLVVGNQYTVEDLLYAVMLSQGNDAAVA 119

Query: 147 FGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
             E++  G  +KF   M+ KAK++ +++T + N +GL++K+Q T+A+D A+L      N 
Sbjct: 120 LAEYVGDGDIQKFVRYMNTKAKELSLKDTYFVNPTGLYEKDQYTSAKDIAVLVKAAISN- 178

Query: 206 PQYYKYFSIRKFRY----RNRIITNHNKLLNKMHNIDGIKTGY-TRNSGFNIVTSLRYKD 260
             +   F  R F +     + I+TN N L      +DG K G  T     + VT+    +
Sbjct: 179 NTFNLMFGARGFGWLNGNNSSILTNQNTLFWSYKGVDGGKIGTNTNPQSISAVTTATLNE 238

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEK 290
             ++AVV           +  +L      K
Sbjct: 239 KRLIAVVFNTNEENA-FSETAKLFDYGFSK 267


>gi|238895697|ref|YP_002920432.1| D-alanyl-D-alanine endopeptidase [Klebsiella pneumoniae NTUH-K2044]
 gi|238548014|dbj|BAH64365.1| D-alanyl-D-alanine endopeptidase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 315

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 102/259 (39%), Gaps = 15/259 (5%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQS 95
           L+    ++ +        S++++D+   ++    Q +  R  AS+TK+MT  ++ +    
Sbjct: 24  LAKTPTAVTASQPEIASGSAMIVDLATKKIIYASQPDLVRPMASITKVMTAMVVLDAH-- 81

Query: 96  KKLHLNTQIPVS-KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
             L L+  + V              ++  +  +    +L  +  S N  + +      G 
Sbjct: 82  --LPLDEMLTVDISHTPEMKGIYSRVRLNSQISRRDMLLLALMSSENRAAASLAHHYPGG 139

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
              F   M+ KA+ +GM +T Y   +GL   N ++TARD   L ++  + +P   +  + 
Sbjct: 140 YDAFIRAMNAKAQALGMTHTRYVEPTGLSVHN-VSTARDLTKL-LIASEQYPLIGQLSTT 197

Query: 215 RKFRYR------NRIITNHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           ++          +    N N L+ +   NI   KTG+T  +G  ++        P+  VV
Sbjct: 198 KEETATFAHPAYSLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLIMRTVINQRPVALVV 257

Query: 268 MGMPTSQERDQKALELITS 286
           M           A  L T 
Sbjct: 258 MDAFGKYTHFADASRLRTW 276


>gi|170706123|ref|ZP_02896585.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0389]
 gi|170129125|gb|EDS97990.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0389]
          Length = 285

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 62/258 (24%), Positives = 113/258 (43%), Gaps = 48/258 (18%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E+ AK   ++++ID +   +      +E   PA                        
Sbjct: 59  IPPEVDAK---AAVIIDASNGDIIYQHNENEAFAPA------------------------ 91

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
                   A    +++ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM
Sbjct: 92  --------AQTEGARIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFVQLM 143

Query: 163 SNKAKKIGMQN-TIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           + KAK++ M +   + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 144 NAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQ 203

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         IDG+KTG+T ++G+    + +  D  I+ VVMG 
Sbjct: 204 LAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGT 263

Query: 271 PTSQERDQKALELITSFL 288
               +R  +  +L+T   
Sbjct: 264 KGKTKRFTETNKLMTYAF 281


>gi|296877427|ref|ZP_06901464.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis ATCC 15912]
 gi|296431588|gb|EFH17398.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis ATCC 15912]
          Length = 413

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 74/329 (22%), Positives = 136/329 (41%), Gaps = 31/329 (9%)

Query: 30  LMGKILFLSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
            +  + F+ ++       + A     P  S+I ++ +  ++   K  D+ R    L+ ++
Sbjct: 5   FLSFLTFILLLCSLPPQRIFANEPDLPVQSAIAVEADTGKILYEKDSDKKREVGGLSTLL 64

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSAN 141
           T Y+IFE +  KKL L   I +S+ A   N    +     E   +T +Q ++AL+  +++
Sbjct: 65  TTYLIFEAIHDKKLSLKDPIKLSEEALALNDIKGAGTLPIEANQYTVDQLLIALLVGNSS 124

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-----------DKNQITT 190
             + A  E + GSEK F   M  K  + G+Q+    NA+GL+           +     +
Sbjct: 125 TAAFALAEKVGGSEKSFVEKMKQKLAEWGIQSPHLINATGLNTQTISGDPDGKEDENQLS 184

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIKTGYTR 246
           A D A++   L ++FP+  KY S     + N  I N N +L  M      +DG++   + 
Sbjct: 185 AYDIAVIAKHLLQDFPEVTKYTSKPTALFSNTQIENPNLMLEGMPNYRSGVDGLRVSNST 244

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKTLKHQQT 298
             G     S       ++ VV+G+         R      L+      F+    +K   T
Sbjct: 245 KGGITFAASTTQNGIHMITVVLGVEAVDGDPYARFVATSSLMNYVVRTFVSSIVVKRGDT 304

Query: 299 HRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
           + K  ++ T  K   +    K+ +    K
Sbjct: 305 YGKSKVAITDGKFESVSAVAKKDFYVVVK 333


>gi|160935078|ref|ZP_02082464.1| hypothetical protein CLOLEP_03954 [Clostridium leptum DSM 753]
 gi|156866531|gb|EDO59903.1| hypothetical protein CLOLEP_03954 [Clostridium leptum DSM 753]
          Length = 460

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/318 (19%), Positives = 123/318 (38%), Gaps = 51/318 (16%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYS--------SIVI-DVNKNQMTGFKQ-DE 73
           +++ + L+   LFL   + +  +       ++        +I + +++   +   K  DE
Sbjct: 1   MKKKLILLFSCLFLFTSIFAFPASAAGDEGFTIDFETNCNAIFMKNLDTGTVVFTKNADE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTE 129
              PAS TK++T  ++ E ++       T + +++           S   +      +  
Sbjct: 61  RIEPASTTKILTYIVVSENVEDLD---GTTVTLTQELKDSLEGTGSSIANIMVGETMSIY 117

Query: 130 QGILALITRSANDVSTAFGEFISG-------------SEKKFAILMSNKAKKIGMQNTIY 176
           + +  L+  S ND +    +++ G             +  +F  +M++KA ++G   T +
Sbjct: 118 EALNCLMVPSGNDAAVILADYVGGRKNQETGNPEKLSNIDRFVQMMNDKAAELGCTGTHF 177

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR------KFRYRNRIITNHN-K 229
            N  GLHD+N  TTARD  I+      + P++    S              R +   N  
Sbjct: 178 ANPDGLHDENHYTTARDMGIMAEYAM-DLPRFMDIVSQTYHIVPATNMQEERRLDTTNLM 236

Query: 230 LLNKMHN-----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ------ 278
           +L    +     + GIKTG+   +G  IVT+ + +    + V MG P    +D       
Sbjct: 237 MLPGYPDYYYQYVTGIKTGWHDQAGDCIVTTAKAEGYAYLCVAMGSPHVAGQDPVPDNGA 296

Query: 279 --KALELITSFLEKKTLK 294
              +  L        TLK
Sbjct: 297 MIDSKALYRWAFRTFTLK 314


>gi|262376983|ref|ZP_06070209.1| D-alanyl-D-alanine endopeptidase [Acinetobacter lwoffii SH145]
 gi|262308021|gb|EEY89158.1| D-alanyl-D-alanine endopeptidase [Acinetobacter lwoffii SH145]
          Length = 353

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 111/243 (45%), Gaps = 15/243 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             +++V+D    ++   K     YP AS+TK+MT  +I +     +L+++ +I + +   
Sbjct: 109 ARAALVMDAQTGEVLFSKNTNTAYPIASITKLMTAVVISDA----RLNMSEKITLQQADF 164

Query: 111 --ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
             +    S   L+        + +L  + +S N  + A      G    F   M+ KAK+
Sbjct: 165 SCSGCKSSSSTLRAGDSMNRAEALLFALMKSENPAAAALARTYPGGRSAFIAKMNAKAKE 224

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR--NRII-- 224
           +GM +T +  ++GLH    + +ARD  IL     + +    ++ +   + +    R++  
Sbjct: 225 LGMNSTRFMESTGLH-PGNMASARDLGILVNTASQ-YGLIRQFSTTPSYDFNLGYRVLKS 282

Query: 225 TNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            N N L+ N   NI+  KTG+   +G  +V      + P+  V++G  +SQ R   A  L
Sbjct: 283 NNTNALVRNGGWNINISKTGFINEAGRCVVMHTTLNNRPVAVVLLGANSSQARTNDATRL 342

Query: 284 ITS 286
           ++ 
Sbjct: 343 MSW 345


>gi|229010663|ref|ZP_04167863.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
 gi|228750628|gb|EEM00454.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
          Length = 407

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 69/284 (24%), Positives = 119/284 (41%), Gaps = 21/284 (7%)

Query: 59  IDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID     M   K    R +PAS+TK++T  ++ E+ +        Q   S+ A  Q  S 
Sbjct: 34  IDAKTGDMLYDKNAHHRAFPASMTKVLTAILLMEHTKP-----EDQFTFSQLALDQEKSN 88

Query: 118 LYLK--EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             ++            ++ L+  SANDVS A  E I GS + FA +M+ +AK++G +++ 
Sbjct: 89  YQIEFHPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGAKDSH 148

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS----IRKFRYRNRIITNHNKLL 231
           +   +GLHD N  TT  D A++   ++K +P+  +  +          +   I N +   
Sbjct: 149 FVTPNGLHDPNHYTTPYDMAMITRGVQK-YPEILQAMNTKRTTVTTSTQTVSIFNKSTYF 207

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ--ERDQKALELITSFLE 289
                  G KTG+T  +   +V       + I+ VVM     +  E  ++  E       
Sbjct: 208 EN-PYSMGGKTGFTNEARNTLVLLNEKDGNRIINVVMASQRPEIYEDLKQMAEYSFGQFT 266

Query: 290 KKTL-----KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           K+T+      HQ+    +    + L+KS  +   K      K  
Sbjct: 267 KQTVLDKHSWHQKAKYLNKDVDSELEKSAELMLKKDEGKNIKTA 310


>gi|118469695|ref|YP_886773.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str.
           MC2 155]
 gi|118170982|gb|ABK71878.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str.
           MC2 155]
          Length = 296

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 103/252 (40%), Gaps = 23/252 (9%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  + +V D++  Q+   + +  R+ PAS  K +   ++ + +      L++ I   +T 
Sbjct: 46  PAETWVVADMDTGQILAGRGEYVRHAPASTIKTLLALVVLDEV-----PLDSTIVADETD 100

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                +   +     +T  Q + A +  S ND +      + G E      M+ KA ++G
Sbjct: 101 TDVECNCAGVAPGRTYTARQLLEAALLASGNDAANTLARMLGGPEAA-VAKMNAKAAQLG 159

Query: 171 MQNTIYKNASGLHDKNQ--ITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRII 224
            ++T     SGL        +T  D A++      + P + +  ++    +     +R++
Sbjct: 160 ARDTNVVTPSGLDAPGMPFWSTPHDLAVIFRAAMAD-PVFAQITAMPSTVFPAKTGDRVL 218

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM------GMPTSQERDQ 278
            N N+LL++     G KTG+T  +    V + +     +V  +M      G PT  +   
Sbjct: 219 VNQNELLHRYPGTLGGKTGFTDIARKTFVAAAQRDGRRLVIAMMYGLVKEGGPTYWD--- 275

Query: 279 KALELITSFLEK 290
           +A  L+     +
Sbjct: 276 QAAGLLDWGFAQ 287


>gi|255602672|ref|XP_002537900.1| d-alanyl-d-alanine carboxypeptidase, putative [Ricinus communis]
 gi|223514649|gb|EEF24482.1| d-alanyl-d-alanine carboxypeptidase, putative [Ricinus communis]
          Length = 269

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/274 (21%), Positives = 117/274 (42%), Gaps = 19/274 (6%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYS--SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           +   I  L +   S+ +     P YS   IV DV + ++   K  D+ R  ASLTK+MT 
Sbjct: 1   MKKVICALLLAATSLCARADTPPLYSPSVIVYDVTRGEVLLEKNADDLRPIASLTKLMTA 60

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSANDV 143
            ++ +  Q     +   + + +    +   + S++ +   T    E  +   +  S N  
Sbjct: 61  MVVLDKAQE----MGDTLTIDEADIDRLKHSGSRIPV--GTSLKREAMLRLALMSSENRA 114

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           ++A      G +  F   M+ KA+ + M  T +++ +GL   + ++TARD   L I    
Sbjct: 115 ASALSRSFPGGQPAFIEQMNLKARGLSMSGTHFEDPTGLS-PDNVSTARDVVKLAIEAS- 172

Query: 204 NFPQYYKYFSIRKFR----YRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRY 258
           ++P    + ++  +      R R   N + ++     ++   KTGYTR +G  IV  +  
Sbjct: 173 HYPMISLFTTLTAYEQTIGNRTRFYHNTDPVVRWTDWDVQLAKTGYTREAGRCIVVDVAM 232

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
              P++  ++G  +++ R      +       +T
Sbjct: 233 PRGPVIIALLGARSARARSADLATIRNWVNGDET 266


>gi|299066620|emb|CBJ37810.1| D-Alanyl-D-alanine carboxypeptidase [Ralstonia solanacearum CMR15]
          Length = 392

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 103/252 (40%), Gaps = 17/252 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNT 102
              +  A     ++V+D     +   K      P AS+TK+MT  ++ +  Q     ++ 
Sbjct: 110 ATPDALALRSSVALVMDQGSGDVLFQKNASAVLPIASITKLMTALVVTDTHQP----MDE 165

Query: 103 QIPVSKTAAT---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            + +++          S+  L+  T  T E  +L  +  S N  ++A G    G    F 
Sbjct: 166 LLEITEDDRDFERNTGSR--LRYGTMLTREDLLLLALMSSENRAASALGRSYPGGRPAFV 223

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             M+ KA ++GM +T Y +++GL   N +++A D A + +   K  P   ++ +  +   
Sbjct: 224 AAMNRKAHELGMTDTHYVDSNGLSSSN-VSSAMDLAKIVMAAYK-VPLIRQFTTTAEHTV 281

Query: 220 --RNRIIT--NHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
               R +   N N+L+       G+ KTG+   +G  +V         +V V +    + 
Sbjct: 282 NANGRTLHYVNTNRLVRGGEWDIGLQKTGFINEAGRCLVMQANVHGRNVVMVFLDSAGNL 341

Query: 275 ERDQKALELITS 286
            R   A+ +   
Sbjct: 342 TRFADAVRVRNW 353


>gi|213619028|ref|ZP_03372854.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 272

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 106/240 (44%), Gaps = 17/240 (7%)

Query: 57  IVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNT--QIPVSKTAATQ 113
           +++D+N N++      +  R  AS+TK+MT  ++ +     +L L+   ++ +S+T    
Sbjct: 1   MIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDA----RLPLDEILKVDISQTP-EM 55

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
                 ++  +  + +  +L  +  S N  + +   +  G    F   M+ KAK +GM +
Sbjct: 56  KGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTH 115

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT--NH 227
           T +   +GL   N ++TARD   L ++  K +P   +  + R+    F +    +   N 
Sbjct: 116 TRFVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTREDMATFSHPAYTLPFRNT 173

Query: 228 NKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           N L+ +   NI   KTG+T  +G  +V      + P+  VVM           A  L T 
Sbjct: 174 NHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 233


>gi|306973781|ref|ZP_07486442.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu010]
 gi|307081490|ref|ZP_07490660.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu011]
 gi|308356859|gb|EFP45710.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu010]
 gi|308360815|gb|EFP49666.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
           SUMu011]
          Length = 307

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 92/239 (38%), Gaps = 15/239 (6%)

Query: 60  DVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           D++   +   +    R+ PAS+ K+    +    + +  L LN  +  +   A    +K+
Sbjct: 3   DLDSGAVIAARDPHGRHRPASVIKV---LVAMASINT--LTLNKSVAGTADDAAVEGTKV 57

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            +     +T  Q +  L+  S ND + A    + G        ++  A K+G ++T    
Sbjct: 58  GVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAA-LEKINLLAAKLGGRDTRVAT 116

Query: 179 ASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI------ITNHNKLLN 232
            SGL      T+A D  +      +N P +    + R F +          + N N+LL 
Sbjct: 117 PSGLDGPGMSTSAYDIGLFYRYAWQN-PVFADIVATRTFDFPGHGDHPGYELENDNQLLY 175

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM-GMPTSQERDQKALELITSFLEK 290
                 G KTGYT ++G   V +       ++ V++ G        ++A  L+      
Sbjct: 176 NYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNT 234


>gi|126649987|ref|ZP_01722220.1| hypothetical protein BB14905_01915 [Bacillus sp. B14905]
 gi|126593159|gb|EAZ87121.1| hypothetical protein BB14905_01915 [Bacillus sp. B14905]
          Length = 289

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 111/240 (46%), Gaps = 21/240 (8%)

Query: 56  SIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKTA 110
           +I++++N+N++   K  E   YPASLTKMMT+ +  E + +    L  +I     +    
Sbjct: 42  AILVNLNENKVLIDKNSEEVIYPASLTKMMTVLVAIEQIPN----LQEEIVLGNNIFNHL 97

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
              N S          T E  +   +  S  + S    E+I+GSE+KF  LM+ KA+++G
Sbjct: 98  YEANASLAGFLPNEKLTLEDLLYGSMLPSGAEASIGLAEYIAGSERKFVNLMNEKAQQLG 157

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYY--KYFSIRKFRYRNRIITN 226
           M+NT + N +GLH     TT +D ++L      N  F Q Y  + +SI+        IT 
Sbjct: 158 MENTHFMNTTGLHHTEHYTTVKDMSLLLQYALTNDEFRQVYTAERYSIKPTNRHPEGITF 217

Query: 227 HNKLLNKM-------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
            NK+   M         I G KTGYT ++G  + +         + V +G      R ++
Sbjct: 218 TNKMFQNMTTRALPGGEILGGKTGYTDDAGLCLASLATINGQEYILVTVGAE-GNSRTEQ 276


>gi|325697148|gb|EGD39035.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK160]
          Length = 455

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 132/301 (43%), Gaps = 45/301 (14%)

Query: 24  IQRNIQLMGKILFLSIIMISM-ASELHAKPKY--------------SSIVIDVNKNQMTG 68
           +++ + L+G     S+  +++ A EL    K               SS+VID +   +  
Sbjct: 5   VKKKLLLLGIAFLTSLAPLAVRADELVDMAKKMYPHDNVQAINRPKSSLVIDGSTGDVVW 64

Query: 69  FKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEK 123
               DE R PAS++K+MTLY++FE ++  K+   T I  +     TA     S   +   
Sbjct: 65  EDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQATANIYEISNNKIVAG 124

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGL 182
             +T  + I   I  S+N  +     ++S ++   F   M+ KA+++GM NT + NASG 
Sbjct: 125 VDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGA 184

Query: 183 HD---------------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NR 222
                             +  TTARD AIL      + P+   Y +  K   +       
Sbjct: 185 AAVSFKGYYNPQNYDNYASNQTTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGTPYEE 244

Query: 223 IITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
               +N  L      +  +DG+KTG + N  FN + +++  D  ++AV+MG+    ++D 
Sbjct: 245 TFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDWSDQDG 304

Query: 279 K 279
           +
Sbjct: 305 E 305


>gi|324993328|gb|EGC25248.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK405]
 gi|332362608|gb|EGJ40406.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK49]
          Length = 455

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 131/301 (43%), Gaps = 45/301 (14%)

Query: 24  IQRNIQLMGKILFLSIIMISM-ASELHAKPKY--------------SSIVIDVNKNQMTG 68
           +++ + L+G     S+  ++  A EL    K               SS+VID +   +  
Sbjct: 5   VKKKLLLLGIAFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPKSSLVIDGSTGDVVW 64

Query: 69  FKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEK 123
               DE R PAS++K+MTLY++FE ++  K+   T I  +     TA     S   +   
Sbjct: 65  EDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQATANIYEISNNKIVAG 124

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGL 182
             +T  + I   I  S+N  +     ++S ++   F   M+ KA+++GM NT + NASG 
Sbjct: 125 VDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGA 184

Query: 183 HD---------------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NR 222
                             +  TTARD AIL      + P+   Y +  K   +       
Sbjct: 185 AAVSFKGYYNPQNYDNYASNQTTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGTPYEE 244

Query: 223 IITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
               +N  L      +  +DG+KTG + N  FN + +++  D  ++AV+MG+    ++D 
Sbjct: 245 TFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDWSDQDG 304

Query: 279 K 279
           +
Sbjct: 305 E 305


>gi|328945504|gb|EGG39655.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK1087]
          Length = 451

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 131/301 (43%), Gaps = 45/301 (14%)

Query: 24  IQRNIQLMGKILFLSIIMISM-ASELHAKPKY--------------SSIVIDVNKNQMTG 68
           +++ + L+G     S+  ++  A EL    K               SS+VID +   +  
Sbjct: 1   MKKKLLLLGIAFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPKSSLVIDGSTGDVVW 60

Query: 69  FKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEK 123
               DE R PAS++K+MTLY++FE ++  K+   T I  +     TA     S   +   
Sbjct: 61  EDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQATANIYEISNNKIVAG 120

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGL 182
             +T  + I   I  S+N  +     ++S ++   F   M+ KA+++GM NT + NASG 
Sbjct: 121 VDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGA 180

Query: 183 HD---------------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NR 222
                             +  TTARD AIL      + P+   Y +  K   +       
Sbjct: 181 AAVSFKGYYNPQNYDNYASNQTTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGTPYEE 240

Query: 223 IITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
               +N  L      +  +DG+KTG + N  FN + +++  D  ++AV+MG+    ++D 
Sbjct: 241 TFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDWSDQDG 300

Query: 279 K 279
           +
Sbjct: 301 E 301


>gi|300691350|ref|YP_003752345.1| D-alanyl-D-alanine carboxypeptidase [Ralstonia solanacearum PSI07]
 gi|299078410|emb|CBJ51061.1| D-Alanyl-D-alanine carboxypeptidase [Ralstonia solanacearum PSI07]
          Length = 374

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 61/329 (18%), Positives = 130/329 (39%), Gaps = 19/329 (5%)

Query: 2   LQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDV 61
           +++ +    K+  +    G+  ++         L  ++ + +    L  +    ++V+D 
Sbjct: 53  VRKVVTVKGKRRVILVERGARAMRAAYVPAAPTLGEAMGLRATPDALALRSSV-ALVMDQ 111

Query: 62  NKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSK 117
               +   K      P AS+TK+MT  ++ +  Q     ++  + +++          S+
Sbjct: 112 GSGDVLFQKNASAVLPIASITKLMTALVVTDTHQP----MDELLEITEDDRDYERNTGSR 167

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
             L+  T  T E  +L  +  S N  ++A G    G    F   M+ KA ++GM +T Y 
Sbjct: 168 --LRYGTMLTREDLLLLALMSSENRAASALGRNYPGGRPAFVAAMNRKAHELGMNDTHYV 225

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY--RNRIIT--NHNKLLNK 233
           +++GL   N +++A D A + +   K  P   ++ +  +       R +   N N+L+  
Sbjct: 226 DSNGLSSSN-VSSATDLAKIVMAAYK-VPLIRQFTTTAEHTVNANGRTLHYVNTNRLVRG 283

Query: 234 MHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
                G+ KTG+   +G  +V         +V V +    +  R   A  +    LE+  
Sbjct: 284 GEWDIGLQKTGFINEAGRCLVMQANVHGRNVVMVFLDSAGNLTRFADAARVRNW-LERTP 342

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRT 321
                T     L +  + +   +   ++T
Sbjct: 343 HVEAPTQAAAPLRNVPVSQPATVLASEQT 371


>gi|329999103|ref|ZP_08303309.1| D-alanyl-D-alanine endopeptidase [Klebsiella sp. MS 92-3]
 gi|328538464|gb|EGF64581.1| D-alanyl-D-alanine endopeptidase [Klebsiella sp. MS 92-3]
          Length = 318

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 102/259 (39%), Gaps = 15/259 (5%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQS 95
           L+    ++ +        S++++D+   ++    Q +  R  AS+TK+MT  ++ +    
Sbjct: 27  LAKTPTAVTASQPEIASGSAMIVDLATKKIIYASQPDLVRPMASITKVMTAMVVLDAH-- 84

Query: 96  KKLHLNTQIPVS-KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
             L L+  + V              ++  +  +    +L  +  S N  + +      G 
Sbjct: 85  --LPLDEMLTVDISHTPEMKGIYSRVRLNSQISRRDMLLLALMSSENRAAASLAHHYPGG 142

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
              F   M+ KA+ +GM +T Y   +GL   N ++TARD   L ++  + +P   +  + 
Sbjct: 143 YDAFIRAMNAKAQALGMTHTRYVEPTGLSVHN-VSTARDLTKL-LIASEQYPLIGQLSTT 200

Query: 215 RKFRYR------NRIITNHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           ++          +    N N L+ +   NI   KTG+T  +G  ++        P+  VV
Sbjct: 201 KEETATFAHPAYSLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLIMRTVINQRPVALVV 260

Query: 268 MGMPTSQERDQKALELITS 286
           M           A  L T 
Sbjct: 261 MDAFGKYTHFADASRLRTW 279


>gi|152971112|ref|YP_001336221.1| D-alanyl-D-alanine endopeptidase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150955961|gb|ABR77991.1| D-alanyl-D-alanine endopeptidase; penicillin-binding proteins 7 and
           8 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 316

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 102/259 (39%), Gaps = 15/259 (5%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQS 95
           L+    ++ +        S++++D+   ++    Q +  R  AS+TK+MT  ++ +    
Sbjct: 25  LAKTPTAVTASQPEIASGSAMIVDLATKKIIYASQPDLVRPMASITKVMTAMVVLDAH-- 82

Query: 96  KKLHLNTQIPVS-KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
             L L+  + V              ++  +  +    +L  +  S N  + +      G 
Sbjct: 83  --LPLDEMLTVDISHTPEMKGIYSRVRLNSQISRRDMLLLALMSSENRAAASLAHHYPGG 140

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
              F   M+ KA+ +GM +T Y   +GL   N ++TARD   L ++  + +P   +  + 
Sbjct: 141 YDAFIRAMNAKAQALGMTHTRYVEPTGLSVHN-VSTARDLTKL-LIASEQYPLIGQLSTT 198

Query: 215 RKFRYR------NRIITNHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           ++          +    N N L+ +   NI   KTG+T  +G  ++        P+  VV
Sbjct: 199 KEETATFAHPAYSLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLIMRTVINQRPVALVV 258

Query: 268 MGMPTSQERDQKALELITS 286
           M           A  L T 
Sbjct: 259 MDAFGKYTHFADASRLRTW 277


>gi|315221821|ref|ZP_07863733.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus anginosus
           F0211]
 gi|315189054|gb|EFU22757.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus anginosus
           F0211]
          Length = 444

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 70/255 (27%), Positives = 118/255 (46%), Gaps = 30/255 (11%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT---- 109
           SS+++D N   +      DE R PAS++K+MTLY++FE +Q  KL  NT I  +      
Sbjct: 32  SSLIVDANTGNILWQDNIDEVRDPASMSKLMTLYLVFEAIQQGKLSENTVIKATPRDEAI 91

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKK 168
           A     S   +     +T  + I      S+N  +     ++S ++   F  +M+ KAK+
Sbjct: 92  AKIYEISNNKIVAGVDYTVSELITMTAVPSSNATTVMLANYLSNNDPDTFLDMMNAKAKE 151

Query: 169 IGMQNTIYKNASGLH---------------DKNQITTARDQAILGILLRKNFPQYYKYF- 212
           +GM NT + NASG                 +    TTARD AILG    KN+P    Y  
Sbjct: 152 LGMTNTKWFNASGAAAVSFKGLYTPQRYDNNAANQTTARDLAILGYHFVKNYPNILNYTN 211

Query: 213 ----SIRKFRYRNRIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
               +++K          +N  L      +  +DG+KTG +    FN + +++  +  ++
Sbjct: 212 KPVVTVKKGTPYEETFETYNYSLPGARYAIKGVDGLKTGSSPQGAFNYIATIKRGEQRLI 271

Query: 265 AVVMGMPTSQERDQK 279
           +V+MG+    ++D +
Sbjct: 272 SVIMGVGNWSDQDGE 286


>gi|225018364|ref|ZP_03707556.1| hypothetical protein CLOSTMETH_02311 [Clostridium methylpentosum
           DSM 5476]
 gi|224948861|gb|EEG30070.1| hypothetical protein CLOSTMETH_02311 [Clostridium methylpentosum
           DSM 5476]
          Length = 304

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 68/281 (24%), Positives = 123/281 (43%), Gaps = 30/281 (10%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMI----------SMASELHAKPKYS--SIVIDVNKNQMT 67
            S   +  + L    L   ++            +  ++  A   YS  +I++DV   ++ 
Sbjct: 7   PSFIWRAGVALCSLALLFCVVHAFVLPKIQQTRTAGTQAEAVQLYSRCAILMDVQSGEVL 66

Query: 68  GFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIP--VSKTAATQNPSKLYLKEKT 124
             K  E R YPASLTK+MT  I  E  ++  L+ +  +   + +    +N S        
Sbjct: 67  LEKNSEKRAYPASLTKIMTALIAIE--KNSDLNKSVVLDSGIFERLQRENASLAGFAPGE 124

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
                  I   +  S  + + +  E  +GS+K+F  LM+ K +++ ++ T Y N +GLH 
Sbjct: 125 QVRLIDLIYGTLLPSGAEAAVSLAEQTAGSQKEFLKLMNQKGRELKLKRTRYSNVTGLHA 184

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----IITNHNKLLNKMHN--- 236
           K+QITTA D A L     +N P + + F  + +            T H+ L ++M +   
Sbjct: 185 KDQITTAADIARLLRYALQN-PTFREVFLSQSYTVPPTNRHSDGFTMHSTLFSRMGDASL 243

Query: 237 ----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
               I G KTG+T  +G  + +  +Y+D  ++ V +    +
Sbjct: 244 EKGEILGGKTGFTDQAGLCLASLAKYQDRELILVTLDADGN 284


>gi|300703920|ref|YP_003745522.1| d-alanyl-d-alanine carboxypeptidase [Ralstonia solanacearum
           CFBP2957]
 gi|299071583|emb|CBJ42907.1| D-Alanyl-D-alanine carboxypeptidase [Ralstonia solanacearum
           CFBP2957]
          Length = 375

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 64/315 (20%), Positives = 125/315 (39%), Gaps = 24/315 (7%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKP------KYSSIVIDVNKNQMTGFKQDEPR 75
           I ++R  + M      +   +  A  L A P         ++V+D     +   K     
Sbjct: 67  ILVERGARPMRAAFVPAAPTLGEAMGLRATPDALALRSSVALVMDQGSGDVLFQKNASAV 126

Query: 76  YP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQG 131
            P AS+TK+MT  ++ +  Q     ++  + +++          S+  L+  T  T E  
Sbjct: 127 LPIASITKLMTALVVTDTHQP----MDELLEITEDDRDYERNTGSR--LRYGTMLTREDL 180

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +L  +  S N  ++A G    G    F   M+ KA ++GM +T Y +++GL   N +++A
Sbjct: 181 LLLALMSSENRAASALGRSYPGGRPAFVAAMNRKAHELGMNDTHYVDSNGLSSSN-VSSA 239

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRY--RNRIIT--NHNKLLNKMHNIDGI-KTGYTR 246
            D A + +   K  P   ++ +  +       R +   N N+L+       G+ KTG+  
Sbjct: 240 MDLAKIVMAAYK-VPLIRQFTTTAEHTVNANGRTLHYVNTNRLVRGGEWEIGLQKTGFIN 298

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSS 306
            +G  +V         +V V +    +  R   A+ +    LE+       T     L +
Sbjct: 299 EAGRCLVMQANVHGRNVVMVFLDSAGNLTRFADAVRVRNW-LERSPHVEAPTQAATPLRN 357

Query: 307 TSLKKSLMIKKLKRT 321
             + +   +   ++T
Sbjct: 358 VPVSQPATVLASEQT 372


>gi|262040149|ref|ZP_06013402.1| penicillin-binding protein 7 [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259042502|gb|EEW43520.1| penicillin-binding protein 7 [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 318

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 102/259 (39%), Gaps = 15/259 (5%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQS 95
           L+    ++ +        S++++D+   ++    Q +  R  AS+TK+MT  ++ +    
Sbjct: 27  LAKTPTAVTASQPEIASGSAMIVDLATKKIIYASQPDLVRPMASITKVMTAMVVLDAH-- 84

Query: 96  KKLHLNTQIPVS-KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
             L L+  + V              ++  +  +    +L  +  S N  + +      G 
Sbjct: 85  --LPLDEMLTVDISHTPEMKGIYSRVRLNSQISRRDMLLLALMSSENRAAASLAHHYPGG 142

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
              F   M+ KA+ +GM +T Y   +GL   N ++TARD   L ++  + +P   +  + 
Sbjct: 143 YDAFIRAMNAKAQALGMTHTRYVEPTGLSVHN-VSTARDLTKL-LIASEQYPLIGQLSTT 200

Query: 215 RKFRYR------NRIITNHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           ++          +    N N L+ +   NI   KTG+T  +G  ++        P+  VV
Sbjct: 201 KEETATFAHPAYSLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLIMRTVINQRPVALVV 260

Query: 268 MGMPTSQERDQKALELITS 286
           M           A  L T 
Sbjct: 261 MDAFGKYTHFADASRLRTW 279


>gi|332361675|gb|EGJ39479.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK1056]
          Length = 455

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 131/301 (43%), Gaps = 45/301 (14%)

Query: 24  IQRNIQLMGKILFLSIIMISM-ASELHAKPKY--------------SSIVIDVNKNQMTG 68
           +++ + L+G     S+  ++  A EL    K               SS+VID +   +  
Sbjct: 5   VKKKLLLLGIAFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPKSSLVIDGSTGDVVW 64

Query: 69  FKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEK 123
               DE R PAS++K+MTLY++FE ++  K+   T I  +     TA     S   +   
Sbjct: 65  EDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQATANIYEISNNKIVAG 124

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGL 182
             +T  + I   I  S+N  +     ++S ++   F   M+ KA+++GM NT + NASG 
Sbjct: 125 VDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGA 184

Query: 183 HD---------------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NR 222
                             +  TTARD AIL      + P+   Y +  K   +       
Sbjct: 185 AAVSFKGYYNPQNYDNYASNQTTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGTPYEE 244

Query: 223 IITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
               +N  L      +  +DG+KTG + N  FN + +++  D  ++AV+MG+    ++D 
Sbjct: 245 TFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDWSDQDG 304

Query: 279 K 279
           +
Sbjct: 305 E 305


>gi|291441236|ref|ZP_06580626.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
           14672]
 gi|291344131|gb|EFE71087.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
           14672]
          Length = 385

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 98/264 (37%), Gaps = 24/264 (9%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLN 101
           + A E+      S +V D     +        R  PAS  K +    +   L +   H  
Sbjct: 45  AGAPEVPELSAKSWLVADAGTGTVLAAHDAHRRLPPASTLKTLFALTVLPALPAGLRH-- 102

Query: 102 TQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
               VS+          S + + E   +        +   S ND        + G  +  
Sbjct: 103 ---EVSERDLRGIGPGSSLVGVAENRTYEVSDLWNGVFLSSGNDAVHVLAS-LGGGWRTT 158

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           A  M  KA  +G ++T  ++  G     Q+++A D A+ G    +N P++ +Y +  + R
Sbjct: 159 AERMEAKAHALGARDTRVESPDGYDAPGQVSSAFDLAVFGRAGLRN-PEFARYCARTEAR 217

Query: 219 YRNR-----IITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           +  R      I N N+LL           + GIK GYT N+G  +V + R     +V  V
Sbjct: 218 FPGRDGGSYGIRNTNRLLTGADGVEPYPGLIGIKNGYTSNAGHTLVAAARQDGRTLVVTV 277

Query: 268 MGMPTSQERD--QKALELITSFLE 289
           M   +       ++A  L+    E
Sbjct: 278 MHPRSGGAHAVYEEARSLLDWGFE 301


>gi|239932885|ref|ZP_04689838.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
           14672]
          Length = 406

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 98/264 (37%), Gaps = 24/264 (9%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLN 101
           + A E+      S +V D     +        R  PAS  K +    +   L +   H  
Sbjct: 66  AGAPEVPELSAKSWLVADAGTGTVLAAHDAHRRLPPASTLKTLFALTVLPALPAGLRH-- 123

Query: 102 TQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
               VS+          S + + E   +        +   S ND        + G  +  
Sbjct: 124 ---EVSERDLRGIGPGSSLVGVAENRTYEVSDLWNGVFLSSGNDAVHVLAS-LGGGWRTT 179

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           A  M  KA  +G ++T  ++  G     Q+++A D A+ G    +N P++ +Y +  + R
Sbjct: 180 AERMEAKAHALGARDTRVESPDGYDAPGQVSSAFDLAVFGRAGLRN-PEFARYCARTEAR 238

Query: 219 YRNR-----IITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           +  R      I N N+LL           + GIK GYT N+G  +V + R     +V  V
Sbjct: 239 FPGRDGGSYGIRNTNRLLTGADGVEPYPGLIGIKNGYTSNAGHTLVAAARQDGRTLVVTV 298

Query: 268 MGMPTSQERD--QKALELITSFLE 289
           M   +       ++A  L+    E
Sbjct: 299 MHPRSGGAHAVYEEARSLLDWGFE 322


>gi|332363024|gb|EGJ40811.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK355]
          Length = 455

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 75/301 (24%), Positives = 132/301 (43%), Gaps = 45/301 (14%)

Query: 24  IQRNIQLMGKILFLSIIMISM-ASELHAKPKY--------------SSIVIDVNKNQMTG 68
           +++ + L+G +   S+  ++  A EL    K               SS+VID +   +  
Sbjct: 5   VKKKLLLLGIVFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPKSSLVIDGSTGDVVW 64

Query: 69  FKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEK 123
               DE R PAS++K+MTLY++FE ++  K+   T I  +      A     S   +   
Sbjct: 65  EDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQAIANIYEISNNKIVAG 124

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNAS-- 180
             +T  + I   I  S+N  +     ++S ++   F   M+ KA+++GM NT + NAS  
Sbjct: 125 VDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGA 184

Query: 181 ------GLHDKNQI-------TTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NR 222
                 G ++           TTARD AIL      + P+   Y +  K   +       
Sbjct: 185 AAVSFKGYYNPQNYDNTLSNQTTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGTPYEE 244

Query: 223 IITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
               +N  L      +  +DG+KTG + N  FN + +++  D  ++AV+MG+    ++D 
Sbjct: 245 TFDTYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDWSDQDG 304

Query: 279 K 279
           +
Sbjct: 305 E 305


>gi|311739947|ref|ZP_07713781.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305020|gb|EFQ81089.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 401

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 102/246 (41%), Gaps = 16/246 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + +V D++  ++   K    RY PAS+ K +   ++ + L      L+ ++ V + +A
Sbjct: 92  AAAWMVSDIDSGEIIAMKDPNGRYRPASIIKALLALVVIDELD-----LHQKVEVGEESA 146

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S + +     +T EQ +  L+  S ND + A  + + G E      +++KA +IG 
Sbjct: 147 QIDGSAVGIGPGGTYTVEQLLQGLLMASGNDAAHALAQELGGDEAT-LRKVNDKAAEIGT 205

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------NRIIT 225
            +T   + SGL      T+A D + +      N P + +        +          + 
Sbjct: 206 NSTYAASYSGLDAPGMSTSAEDISRIYRAAFHN-PTFARIVDTESVDFPGWGDLDGYQLG 264

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE--RDQKALEL 283
           N N L     +  G KTG+T ++    V +L      + AV++           ++A +L
Sbjct: 265 NDNGLFLNDPDGIGGKTGFTDDAHHTFVGALDRHGRRLQAVLLDTTVEHGPRAWEQAQKL 324

Query: 284 ITSFLE 289
           +    +
Sbjct: 325 LHEAYK 330


>gi|156933292|ref|YP_001437208.1| D-alanyl-D-alanine endopeptidase [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156531546|gb|ABU76372.1| hypothetical protein ESA_01104 [Cronobacter sakazakii ATCC BAA-894]
          Length = 310

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 103/241 (42%), Gaps = 15/241 (6%)

Query: 55  SSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAAT 112
           S++++D+  N++      D  R  AS+TK+MT  ++ +      L L+  + V       
Sbjct: 46  SAMIVDLRTNEVLFSSHPDLVRPIASITKVMTAMVVLDA----SLPLDEMLTVDISHTPE 101

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  ++  +  + +  +L  +  S N  + +      G    F   M+ KAK +GM+
Sbjct: 102 MKGIYSRVRLNSQISRKNMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAKALGMR 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIIT----N 226
           NT +   +GL   N ++TARD   L ++  K +P   +  + R+    + N   T    N
Sbjct: 162 NTHFVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTREEMATFSNPTYTLPFRN 219

Query: 227 HNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+ +   NI   KTG+T  +G  ++     K+ P+  VVM           A  L T
Sbjct: 220 TNHLVYRDNWNIQLTKTGFTNAAGHCLMMRTLIKNRPVTLVVMDAFGKYTHFADASRLRT 279

Query: 286 S 286
            
Sbjct: 280 W 280


>gi|71906306|ref|YP_283893.1| murein-DD-endopeptidase [Dechloromonas aromatica RCB]
 gi|71845927|gb|AAZ45423.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Dechloromonas aromatica RCB]
          Length = 359

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 104/240 (43%), Gaps = 13/240 (5%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++VID +  Q    KQ +   P AS++K+MT  ++ +     KL L   + +       
Sbjct: 113 SALVIDQSTGQAMLEKQPDLVVPIASISKLMTAMVVLDA----KLDLQEVVTIGDADVDG 168

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              ++  L   T  T E  +L  +  S N  + + G    G    F   M+ KA+ +GM 
Sbjct: 169 LKGTRSRLPVGTTMTREAAMLLALMSSENRAAHSLGRHYPGGLPAFVQAMNKKAQALGMY 228

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHN 228
           N+ ++  +GL   N ++TA D A +     + +P+  +Y +  + +     R R   N N
Sbjct: 229 NSRFEEPTGLS-SNNVSTAHDLARMVAAAAR-YPEIRQYSTTAEAKVELNGRIRDFHNTN 286

Query: 229 KLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
            L+   +   G+ KTGY   +G  +V   R  D P+V V++       R   A  +    
Sbjct: 287 ALVRNDNWEIGVSKTGYISEAGRCLVMQARVADKPVVIVLLDSNGKMTRVGDANRIKRWM 346


>gi|331084851|ref|ZP_08333939.1| hypothetical protein HMPREF0987_00242 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410945|gb|EGG90367.1| hypothetical protein HMPREF0987_00242 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 323

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 68/271 (25%), Positives = 119/271 (43%), Gaps = 25/271 (9%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
           L +++  I +      +  +++ +  VN+ Q+   +      YPAS TK++T Y+  +Y 
Sbjct: 55  LCVAVENIELPGYTTDQQLHAAGLFGVNQEQVLYAQNLHNKLYPASTTKVLTAYVALKYG 114

Query: 94  QSKKLHLNTQIPVSKTAAT--QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
                +L+  + VS+ A T   + S   L+E    T E  +  L+  S ND + A  E I
Sbjct: 115 -----NLSDIVTVSRRAVTFDVDASVCGLQENDQITMEALLYGLLLHSGNDNAIAIAEHI 169

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           SGS + F  LM+ +A+K+G  NT + N  GLH+ +  TTA D  ++     KN   +   
Sbjct: 170 SGSVEAFVELMNEEARKLGATNTHFTNPHGLHEADHYTTAYDLYLIFNECMKN-ETFLTM 228

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHN---------------IDGIKTGYTRNSGFNIVTSL 256
            S   +    +  T+  + L    +               I G KTG    +G  ++   
Sbjct: 229 ISQSSYAATVQNPTSGTRQLTWTPSHFYAQGLAIPPQNAVIVGGKTGTEDLAGSCLILLE 288

Query: 257 RY-KDDPIVAVVMGMPTSQERDQKALELITS 286
           +    +P +++VMG P           LI++
Sbjct: 289 KDLSGNPYISIVMGAPDKTVLYNDMTSLISA 319


>gi|323352662|ref|ZP_08087632.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           VMC66]
 gi|322121698|gb|EFX93444.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           VMC66]
 gi|324995361|gb|EGC27273.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK678]
 gi|327468942|gb|EGF14414.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK330]
          Length = 455

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 131/301 (43%), Gaps = 45/301 (14%)

Query: 24  IQRNIQLMGKILFLSIIMISM-ASELHAKPKY--------------SSIVIDVNKNQMTG 68
           +++ + L+G     S+  ++  A EL    K               SS+VID +   +  
Sbjct: 5   VKKKLLLLGIAFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPKSSLVIDGSTGDVVW 64

Query: 69  FKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEK 123
               DE R PAS++K+MTLY++FE ++  K+   T I  +     TA     S   +   
Sbjct: 65  EDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQATANIYEISNNKIVAG 124

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGL 182
             +T  + I   I  S+N  +     ++S ++   F   M+ KA+++GM NT + NASG 
Sbjct: 125 VDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGA 184

Query: 183 HD---------------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NR 222
                             +  TTARD AIL      + P+   Y +  K   +       
Sbjct: 185 AAVSFKGYYNPQNYDNYASNQTTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGTPYEE 244

Query: 223 IITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
               +N  L      +  +DG+KTG + N  FN + +++  D  ++AV+MG+    ++D 
Sbjct: 245 TFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDWSDQDG 304

Query: 279 K 279
           +
Sbjct: 305 E 305


>gi|270260850|ref|ZP_06189123.1| putative endopeptidase [Serratia odorifera 4Rx13]
 gi|270044334|gb|EFA17425.1| putative endopeptidase [Serratia odorifera 4Rx13]
          Length = 309

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 104/254 (40%), Gaps = 18/254 (7%)

Query: 45  ASELHAKPKY---SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           A+   A+P+    S++V+D+  +++   +  DE    AS+TK+MT  +  +      L L
Sbjct: 32  AAAHAAQPELASGSAMVVDMQTHKVMYARNPDEVVPIASITKLMTAMVTLDAH----LPL 87

Query: 101 NTQIPVSKTAA-TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           +  + V              ++  +  T +  +L  +  S N  + +      G    F 
Sbjct: 88  DEMLSVDIHQTPEMKGVYSRVRLNSEITRKDMLLLALMSSENRAAASLAHHYPGGYGAFI 147

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--- 216
             M+ KA+ +GM NT Y   +GL   N ++TARD   L ++  K +P   +  +  +   
Sbjct: 148 KAMNAKARALGMTNTHYVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTTERMA 205

Query: 217 -FRYRNRIIT--NHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            F+  N  +   N N L+ N   NI   KTG+T  +G  +          +  VV+    
Sbjct: 206 SFKDPNYTLPFRNTNHLVYNPKWNIQLTKTGFTNEAGHCLAMRTMIGSRSVSLVVLDAFG 265

Query: 273 SQERDQKALELITS 286
                  A  L T 
Sbjct: 266 KYTHFADANRLRTW 279


>gi|241760382|ref|ZP_04758477.1| D-alanyl-D-alanine endopeptidase [Neisseria flavescens SK114]
 gi|261379793|ref|ZP_05984366.1| penicillin-binding protein 7 [Neisseria subflava NJ9703]
 gi|241319260|gb|EER55738.1| D-alanyl-D-alanine endopeptidase [Neisseria flavescens SK114]
 gi|284797478|gb|EFC52825.1| penicillin-binding protein 7 [Neisseria subflava NJ9703]
          Length = 318

 Score =  179 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 60/270 (22%), Positives = 120/270 (44%), Gaps = 23/270 (8%)

Query: 39  IIMISMASELHAKPK--------YSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYII 89
              +S A ++ A+           S+++ +    ++   K  +   P AS++K+M+  ++
Sbjct: 56  AFALSHADQVEAQAALAGPLLSSQSALIFNNKTGEVLYQKNPDRVMPIASISKLMSAMVV 115

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            +      L +N  I +++    +   +   L   T  T  + +   +  S N  + A G
Sbjct: 116 LDAH----LDMNEPITITEAEIDRLKGTGSRLSIGTTLTRGELLHLSLMSSENRATHALG 171

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
               G    F   M+ KA+ +GM ++ +   +GL+ +N ++TARD   +     K +P  
Sbjct: 172 RTYPGGMSAFVAAMNAKAQSLGMTSSRFYEPTGLNFQN-VSTARDLNRMVAAASK-YPLI 229

Query: 209 YK-----YFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
            K     Y S+     R +   N N L+     NI+  KTGY R +G ++V     ++ P
Sbjct: 230 RKNSTSNYGSVWTANGR-QNYKNSNALVREGSWNIELQKTGYIREAGRSMVVKANVQNQP 288

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKT 292
           I  V++  P+S  R   A ++ +  L++++
Sbjct: 289 ITIVLLNSPSSTTRVNDARKIESWMLQRRS 318


>gi|30261982|ref|NP_844359.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Ames]
 gi|47527245|ref|YP_018594.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49184822|ref|YP_028074.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Sterne]
 gi|65319265|ref|ZP_00392224.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A2012]
 gi|165870241|ref|ZP_02214897.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0488]
 gi|167632885|ref|ZP_02391211.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0442]
 gi|167638465|ref|ZP_02396742.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0193]
 gi|170686389|ref|ZP_02877610.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0465]
 gi|177650876|ref|ZP_02933773.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0174]
 gi|190566291|ref|ZP_03019209.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis Tsiankovskii-I]
 gi|227815230|ref|YP_002815239.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. CDC 684]
 gi|229601545|ref|YP_002866353.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0248]
 gi|254684545|ref|ZP_05148405.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254721303|ref|ZP_05183093.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A1055]
 gi|254734848|ref|ZP_05192560.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254741249|ref|ZP_05198937.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Kruger B]
 gi|254755503|ref|ZP_05207537.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Vollum]
 gi|254760039|ref|ZP_05212063.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Australia 94]
 gi|30256608|gb|AAP25845.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
           Ames]
 gi|47502393|gb|AAT31069.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49178749|gb|AAT54125.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Sterne]
 gi|164714129|gb|EDR19650.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0488]
 gi|167513766|gb|EDR89135.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0193]
 gi|167531697|gb|EDR94362.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0442]
 gi|170669465|gb|EDT20207.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0465]
 gi|172083337|gb|EDT68398.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0174]
 gi|190562426|gb|EDV16393.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis Tsiankovskii-I]
 gi|227006117|gb|ACP15860.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
           CDC 684]
 gi|229265953|gb|ACQ47590.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0248]
          Length = 285

 Score =  179 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 62/258 (24%), Positives = 113/258 (43%), Gaps = 48/258 (18%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +  E+ AK   ++++ID +   +      +E   PA                        
Sbjct: 59  IPPEVDAK---AAMIIDASNGDIIYQHNENEAFAPA------------------------ 91

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
                   A    +++ ++     T +    AL+  SAN+ + A  E ++ +EK F  LM
Sbjct: 92  --------AQTEGARIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFVQLM 143

Query: 163 SNKAKKIGMQN-TIYKNASGLHDKN---QITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           + KAK++ M +   + NASGL + +      TA D A L   L K++P+  +   +R+ +
Sbjct: 144 NAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLRQSQ 203

Query: 219 --YRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
             + N  + + N +LNK         IDG+KTG+T ++G+    + +  D  I+ VVMG 
Sbjct: 204 LAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMGT 263

Query: 271 PTSQERDQKALELITSFL 288
               +R  +  +L+T   
Sbjct: 264 KGKTKRFTETNKLMTYAF 281


>gi|229060227|ref|ZP_04197596.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
 gi|228719109|gb|EEL70721.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
          Length = 338

 Score =  179 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 62/284 (21%), Positives = 128/284 (45%), Gaps = 16/284 (5%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYI 88
           ++  ++ L   +      + AK   S+++ID N  ++   K +  P   A+L+K+MT YI
Sbjct: 15  IITALIVLYFYLYVNGPIIQAK---SALLIDTNSGEIVYKKNESTPIQSATLSKLMTEYI 71

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           + E L   K+ L+  + +S        S +++      T    +  L+    N  +    
Sbjct: 72  VMEQLHDGKIQLDESVQISNDVFQTETSPIHVTSNDKTTVRDLLNTLLLTGNNCSALELA 131

Query: 149 EFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDKNQI---TTARDQAILGILLRKN 204
           E I+G+E  F +LM+ KAK++ +   + + N++G++++      TT  D A L   L K+
Sbjct: 132 EHIAGNEANFTMLMNEKAKQLKLSQPSPFLNSTGVNNEKNKQSITTTIDVANLAAQLVKD 191

Query: 205 FPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGYTRNSGFNIVTSL 256
           FP       +    F +++  + N NK++       K+  +DG++T  + N  ++ V + 
Sbjct: 192 FPDVLSITKLTSYQFNFKDFQVFNTNKMIYSLNENIKLQGVDGLQTSLSTNGNYSFVGTA 251

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           +  D   ++VV+          +  +L+    E  +    Q  +
Sbjct: 252 KQGDTRFISVVLDANEENTAFVETKKLLQYGFEPTSYSALQAFQ 295


>gi|171320025|ref|ZP_02909096.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ambifaria MEX-5]
 gi|171094718|gb|EDT39761.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ambifaria MEX-5]
          Length = 370

 Score =  179 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 101/249 (40%), Gaps = 14/249 (5%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            +  A     + V+D N  +    K      P AS++K+MT  ++ +     K  +  Q+
Sbjct: 109 PDALALRSSVAYVVDQNTGEPLFDKNSHAVVPIASISKLMTAMVVLDS----KSPMTDQL 164

Query: 105 PVSKTAATQN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            V+         +   L   +  + E  +   +  S N  + A   +  G    F   M+
Sbjct: 165 EVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMN 224

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY---- 219
            KAK +GM +T ++N++GL   N +++ARD   +     + +P   ++ + R +      
Sbjct: 225 AKAKTLGMNDTHFENSTGLSSSN-VSSARDLVKMVNAAYQ-YPMIRQFSTDRTYDVYTGK 282

Query: 220 RNRIITNHNKLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           RN +  + N L+  N   +I   KTG+   +G  +V        P+V V++       R 
Sbjct: 283 RNLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGRPMVMVLLDSFGKYSRF 342

Query: 278 QKALELITS 286
             A  L   
Sbjct: 343 ADAARLRNW 351


>gi|326381944|ref|ZP_08203637.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326199370|gb|EGD56551.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 416

 Score =  179 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 99/272 (36%), Gaps = 27/272 (9%)

Query: 37  LSIIMISMASELHAKPKYS-SIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
             ++    A  L  +   +  ++ D++  ++   K    RY PAS  K++   +  +   
Sbjct: 89  CGVVADPGAGPLPERLNSAGWLIADLDSGRVIAAKDPHGRYRPASTIKVLLALVALD--- 145

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
             +L L+ Q+  +    +       +    ++T    +  L+  S ND + A    + G 
Sbjct: 146 --ELPLDKQVEATPEDWSMEGDSCGMGPGGHYTVRDLLSGLVVVSGNDCANALAGQLGGH 203

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           +   A + + KA ++G ++T   + SGL      T+  D A+L      N   + +  S+
Sbjct: 204 DAALAKM-NAKAAELGARDTRATSPSGLDAPGMSTSPYDLALLFREAMGN-ATFRQLISM 261

Query: 215 RKFRYRNR---------------IITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRY 258
           + + +                   +   N LL      + G KTGYT ++    V +   
Sbjct: 262 KNYTFPGYPKRPDVPDDVDHPAWTMGTSNPLLRDDWPGMLGGKTGYTDDALKTFVGAAER 321

Query: 259 KDDPIVAVVMGMPTSQE--RDQKALELITSFL 288
               IV   M      +    Q+A  +     
Sbjct: 322 NGRRIVITQMYGLNEADNMYAQQAERMFDYGF 353


>gi|297196040|ref|ZP_06913438.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|297153041|gb|EFH32114.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 367

 Score =  179 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 93/257 (36%), Gaps = 26/257 (10%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             S +V D +   +        R  PAS  K +       +L     H   ++   + A 
Sbjct: 42  ALSWLVADADTGDVLAAHDAHRRLPPASTIKTLFALTALPHLADAPPH---KVTEEELAG 98

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             +  S + +     +T +     +   S ND      E ++G     A  M  KA+ +G
Sbjct: 99  VGEGSSLVGIAPGRTYTMDDLWRGVFLSSGNDAVRVLAE-MNGGWAATAEQMQAKARALG 157

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI------- 223
             +T   +  G  +  Q+++A D A+ G     + PQ+  Y S     +           
Sbjct: 158 AFDTHVVSPDGYDEPGQVSSAFDLAVFGRAGLTD-PQFASYASTVDAPFPGGTRDDGSPT 216

Query: 224 ----ITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
               I N N+LL       +   I G+K GYT N+G  +V + R     +V  V+   + 
Sbjct: 217 WTYGIRNTNRLLTGADGVERYPGIIGVKNGYTSNAGNTLVAAARRDGRTLVVTVLNPQSG 276

Query: 274 QER--DQKALELITSFL 288
                 ++A  L+    
Sbjct: 277 GGHKVYEEARSLLDWGF 293


>gi|296840908|ref|ZP_06863761.2| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           polysaccharea ATCC 43768]
 gi|296839544|gb|EFH23482.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           polysaccharea ATCC 43768]
          Length = 335

 Score =  179 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 116/247 (46%), Gaps = 13/247 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++V++    Q+   K  +   P AS++K+M+  ++ +      L +N  + ++    
Sbjct: 95  SQSALVVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDA----NLDMNETVTITPDEI 150

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   +   L   T  T ++ +   +  S N  + A G    G    F   M+ KA+ +G
Sbjct: 151 DRLKGTGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLG 210

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNRIITN 226
           M ++ +   +GL+ +N ++TA+D +++     + +PQ     +      + +   +   N
Sbjct: 211 MYSSRFYEPTGLNFQN-VSTAKDLSLMVNAAAQ-YPQIRTNSTSNYASVQTKNGQQNYKN 268

Query: 227 HNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+   M NI+  KTGY R +G ++V     ++ P+  V++  PTS  R   A ++ +
Sbjct: 269 SNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIES 328

Query: 286 SFLEKKT 292
             L++++
Sbjct: 329 WMLQQRS 335


>gi|295676949|ref|YP_003605473.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. CCGE1002]
 gi|295436792|gb|ADG15962.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. CCGE1002]
          Length = 404

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 98/240 (40%), Gaps = 17/240 (7%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + VID N  +    K      P AS+TK+MT  ++ +     K  +  QI V+       
Sbjct: 153 AYVIDQNSGETLFDKNSRAVVPIASITKLMTAMVVLDS----KEPMTDQIEVTDEDRDYE 208

Query: 115 ---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S+  L   +  + E  +   +  S N  + A   +  G    F   M+ KAK++GM
Sbjct: 209 KNTGSR--LAVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFLAAMNAKAKQLGM 266

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNH 227
            +T ++N +GL   N +++ARD   +     + +P   K+ +   +      R     + 
Sbjct: 267 NDTHFENPTGLTSMN-VSSARDLVKMVNAAYQ-YPLIRKFSTDHSYEVYTGKRTLAYNST 324

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           N L+ N   +I   KTG+   +G  +V        P++ V++       R   A  L T 
Sbjct: 325 NALVRNPTWDIGLQKTGFINEAGECLVMQATIHGRPMILVLLDSSGKYSRFADATRLRTW 384


>gi|322411115|gb|EFY02023.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 393

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 80/359 (22%), Positives = 152/359 (42%), Gaps = 57/359 (15%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHA-------------KPKYSSIVIDVNKNQMTGFK 70
           I+R   ++  ++   I+ +S A ++               +PK +SIV+D N + +    
Sbjct: 2   IKRIALVIFTVMCFLIMPVSHAEDIMDITRQAGYTISEVNRPK-ASIVVDANTSDILWQD 60

Query: 71  Q-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTY 125
             D PR PAS++KM TLY++FE L   K+ ++T +  ++T    A     S   +     
Sbjct: 61  NIDIPRDPASMSKMFTLYVLFEELAKGKITMDTTVTATETDQAIAKIYEISNNNIVAGVA 120

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLHD 184
           +     I      S+N  +     ++S ++   F   ++  AKK+GM NT + NASG   
Sbjct: 121 YPIRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRINATAKKLGMTNTHFSNASGAAA 180

Query: 185 K---------------NQITTARDQAILGILLRKNFPQYYKYFS------------IRKF 217
           +                 ITTARD A L     K +P    + +              +F
Sbjct: 181 QAFQGYYNPTKYDLSAANITTARDLAKLLYAFLKKYPHIIDFTNQSVVHTMVGTPYEEEF 240

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
              N  + N N+    M  +DG+KTG + ++ FN + + +  +  ++ +VMG+    +++
Sbjct: 241 HTYNYSLPN-NQF--GMEGVDGLKTGSSPSAAFNAMVTAKRGNTRLITIVMGVGDWSDQN 297

Query: 278 QKALE--LITSFLEK-----KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKID 329
            +      + +  EK     K+L      + + L S   K++L  +   +    +  ++
Sbjct: 298 GEFYRHPFVNALTEKGFSDSKSLTKAARKKLEKLVSQKKKENLPKQHRTKPAKNYSTLE 356


>gi|167755756|ref|ZP_02427883.1| hypothetical protein CLORAM_01271 [Clostridium ramosum DSM 1402]
 gi|167704695|gb|EDS19274.1| hypothetical protein CLORAM_01271 [Clostridium ramosum DSM 1402]
          Length = 411

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 111/254 (43%), Gaps = 19/254 (7%)

Query: 31  MGKILFLSIIMISMASELHAKPKYS--------SIVIDVNKNQMTGFKQ-DEPRYPASLT 81
           +   L + I +I+  + + A             ++ ID     +   K  DE  YPAS+T
Sbjct: 5   ILSFLLVGICLIATLTPIRALENSEDIGLTCDYAVAIDAKSGLVLYNKNMDERMYPASMT 64

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSK--TAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           K+MT+ +  E +   K    T I  S   T      S    +     T E  +   I  S
Sbjct: 65  KVMTVILALELMDDMKKT--TVITQSDIDTVWETGASSANFEVGETVTYEDLLYGAILPS 122

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
             D + A    + GS++ F   M+  A+K+ +++T + N +G+HD+N  TT  D A++  
Sbjct: 123 GADATRALANNLCGSQEAFVDKMNELAQKLNLKDTHFVNTTGIHDENHYTTVHDMALIVQ 182

Query: 200 LLRKN------FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
              +N      + Q YK  S    ++ N+ + N  +    + +I G K+GYT  +   + 
Sbjct: 183 YAIQNEDFKNIYAQRYKTSSNGLHQWVNKSMYNAKRAKINVDDILGCKSGYTNEAKSCLS 242

Query: 254 TSLRYKDDPIVAVV 267
           +  R  D+ I+ +V
Sbjct: 243 SLNRVNDNEIITIV 256


>gi|254191392|ref|ZP_04897896.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254209371|ref|ZP_04915717.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei JHU]
 gi|147750144|gb|EDK57215.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei JHU]
 gi|157939064|gb|EDO94734.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 362

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 98/238 (41%), Gaps = 13/238 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + V+D N ++    K      P AS+TK+MT  ++ +     K  L  QI V+       
Sbjct: 112 AYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVLDS----KSPLTDQIDVTDEDRDYE 167

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +   L   +  + E  +   +  S N  + A   +  G    F   M+ KAK +GM +
Sbjct: 168 KGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMNAKAKSLGMTD 227

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI----ITNHNK 229
           T ++N++GL  +N +++ARD   +     + +P   K+ + R +            + N 
Sbjct: 228 THFENSTGLSSQN-VSSARDLVKMVNAAYQ-YPLIRKFSTDRSYEVNTGKRTLAYNSTNA 285

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L+ N   +I   KTG+   +G  +V        PIV V++       R   A  +   
Sbjct: 286 LVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRPIVMVLLDSFGKYSRFADASRVRNW 343


>gi|329116007|ref|ZP_08244724.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parauberis
           NCFD 2020]
 gi|326906412|gb|EGE53326.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parauberis
           NCFD 2020]
          Length = 391

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 78/331 (23%), Positives = 141/331 (42%), Gaps = 51/331 (15%)

Query: 49  HAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS 107
            A    SSIV++     +      D  R PAS++K+ TLY++FE +++ KL L+  I  S
Sbjct: 42  PADKPVSSIVVNAKNGDIIWQDNIDASRDPASMSKLFTLYLLFEDIKAGKLSLSDHIRAS 101

Query: 108 KTAATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK-KFAI 160
           +T   Q+ S++Y      +     +     I      S+N  +     ++S ++   F  
Sbjct: 102 QT--DQDISQIYAISNNKIVAGVDYPIRDLITMTAVPSSNAATLMLANYMSDNDAGAFIN 159

Query: 161 LMSNKAKKIGMQNTIYKNASG-------------LHDKNQ--ITTARDQAILGILLRKNF 205
            ++  A+K+GM+NT + NASG              +D NQ   T+ARD AIL     KN+
Sbjct: 160 RINVTAQKLGMKNTFFTNASGAVASAFEGHYSPEGYDSNQPNKTSARDLAILCYHFLKNY 219

Query: 206 PQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSL 256
           P+  ++      +  +R        ++N  L         +DG+KTG + ++ FN V + 
Sbjct: 220 PEILEFTCKSSVKTMDRTPYEEEFHSYNYSLPGDKFGIKGVDGLKTGSSPSAAFNAVITA 279

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALE------LITSFLEKKTLKHQ--------QTHRKD 302
           +  D  ++++VMG+    +++ +         +         L            TH+ +
Sbjct: 280 KRDDTRLISIVMGVGDWSDQEGEFHRHPFINAITEYGFTNDALHQNNHPNIILADTHKTN 339

Query: 303 NLSSTSLKKSLMIKKLKRTYSQFKKIDAKAH 333
              S   K      + K  Y +F+K   + H
Sbjct: 340 ESHSRHYKNK---NEPKTFYDKFEKFVDRHH 367


>gi|167919694|ref|ZP_02506785.1| family S11 unassigned peptidase [Burkholderia pseudomallei BCC215]
          Length = 362

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 98/238 (41%), Gaps = 13/238 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + V+D N ++    K      P AS+TK+MT  ++ +     K  L  QI V+       
Sbjct: 112 AYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVLDS----KSPLTDQIDVTDEDRDYE 167

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +   L   +  + E  +   +  S N  + A   +  G    F   M+ KAK +GM +
Sbjct: 168 KGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMNAKAKSLGMTD 227

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI----ITNHNK 229
           T ++N++GL  +N +++ARD   +     + +P   K+ + R +            + N 
Sbjct: 228 THFENSTGLSSQN-VSSARDLVKMVNAAYQ-YPLIRKFSTDRSYEVNTGKRTLAYNSTNA 285

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L+ N   +I   KTG+   +G  +V        PIV V++       R   A  +   
Sbjct: 286 LVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRPIVMVLLDSFGKYSRFADASRVRNW 343


>gi|257092407|ref|YP_003166048.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044931|gb|ACV34119.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 417

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 109/262 (41%), Gaps = 14/262 (5%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
               A    S++V+  +  +    K      P AS+TK+MT  ++ +   +    L   I
Sbjct: 162 PGQLAVHSGSALVVPQDGGEPLYEKNAHAVVPIASITKVMTAMVVLDSQPN----LQAPI 217

Query: 105 PVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            +S         S+  L+  +    E  +L  +  S N  + A G    G    F   M+
Sbjct: 218 TISDDDVDYLRGSRSRLQVGSVIPRETALLLALMSSENRAANALGRHYPGGLTAFVAAMN 277

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR----KFRY 219
            KA  +GM  + +++ +GL + N ++TA D A +     + +P   ++ +      +   
Sbjct: 278 RKAASLGMTRSHFEDPTGL-NSNNVSTAHDLARMVAAAHR-YPLIREFSTTSGARAEING 335

Query: 220 RNRIITNHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           R     N N+L++      G+ KTGY + +G  +V   R  D P+V V++     Q R  
Sbjct: 336 RELGFHNTNQLVSSPTWEIGLSKTGYIQEAGKCLVMQARVADKPVVIVLLDSAGKQTRIG 395

Query: 279 KALELITSFLEKKTLKHQQTHR 300
            A   I  ++E  +L  +   R
Sbjct: 396 DANR-IKRWMESASLSGRGPTR 416


>gi|53719907|ref|YP_108893.1| peptidase [Burkholderia pseudomallei K96243]
 gi|121599737|ref|YP_993538.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei
           SAVP1]
 gi|126450244|ref|YP_001081045.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei NCTC
           10247]
 gi|237813026|ref|YP_002897477.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei MSHR346]
 gi|238561630|ref|ZP_00441759.2| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei GB8 horse 4]
 gi|52210321|emb|CAH36300.1| family S11 unassigned peptidase [Burkholderia pseudomallei K96243]
 gi|121228547|gb|ABM51065.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei
           SAVP1]
 gi|126243114|gb|ABO06207.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei NCTC
           10247]
 gi|237503680|gb|ACQ95998.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei MSHR346]
 gi|238524246|gb|EEP87680.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei GB8 horse 4]
          Length = 359

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 98/238 (41%), Gaps = 13/238 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + V+D N ++    K      P AS+TK+MT  ++ +     K  L  QI V+       
Sbjct: 109 AYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVLDS----KSPLTDQIDVTDEDRDYE 164

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +   L   +  + E  +   +  S N  + A   +  G    F   M+ KAK +GM +
Sbjct: 165 KGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMNAKAKSLGMTD 224

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI----ITNHNK 229
           T ++N++GL  +N +++ARD   +     + +P   K+ + R +            + N 
Sbjct: 225 THFENSTGLSSQN-VSSARDLVKMVNAAYQ-YPLIRKFSTDRSYEVNTGKRTLAYNSTNA 282

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L+ N   +I   KTG+   +G  +V        PIV V++       R   A  +   
Sbjct: 283 LVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRPIVMVLLDSFGKYSRFADASRVRNW 340


>gi|319637748|ref|ZP_07992514.1| D-alanyl-D-alanine-endopeptidase [Neisseria mucosa C102]
 gi|317400903|gb|EFV81558.1| D-alanyl-D-alanine-endopeptidase [Neisseria mucosa C102]
          Length = 318

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 121/272 (44%), Gaps = 23/272 (8%)

Query: 37  LSIIMISMASELHAKPK--------YSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLY 87
           L    +S A ++ A+           S+++ +    ++   K  +   P AS++K+M+  
Sbjct: 54  LEAFALSHADQVEAQAALAGPLLSSQSALIFNNKTGEVLYQKNPDRVMPIASISKLMSAM 113

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           ++ +      L +N  I +++    +   +   L   T  T  + +   +  S N  + A
Sbjct: 114 VVLDAH----LDMNEPITITEAEIDRLKGTGSRLSIGTTLTRGELLHLSLMSSENRATHA 169

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
            G    G    F   M+ KA+ +GM ++ +   +GL+ +N ++TARD   +     K +P
Sbjct: 170 LGRTYPGGMSAFVAAMNAKAQSLGMSSSRFYEPTGLNFQN-VSTARDLNRMVAAASK-YP 227

Query: 207 QYYK-----YFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
              K     Y S+     R +   N N L+     NI+  KTGY R +G ++V     ++
Sbjct: 228 LIRKNSTSNYGSVWTANGR-QNYKNSNALVREGSWNIELQKTGYIREAGRSMVVKANVQN 286

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
            PI  V++  P+S  R   A ++ +  L++++
Sbjct: 287 QPITIVLLNSPSSTTRVNDARKIESWMLQRRS 318


>gi|145504310|ref|XP_001438127.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124405288|emb|CAK70730.1| unnamed protein product [Paramecium tetraurelia]
          Length = 319

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 66/310 (21%), Positives = 120/310 (38%), Gaps = 35/310 (11%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKK 97
           S + +    +  A    S  ++    +++           ASLTK+MT Y   +  +   
Sbjct: 13  SALSLLNPPQTTA---LSWCIVTQIGDELVSKSPSLKLEVASLTKIMTAYTAIQLCEDLN 69

Query: 98  LHLNTQ-IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG--- 153
           L  N   I + + A     +  +L+     +  + + AL+  S ND + +          
Sbjct: 70  LDYNEINIRIPRIATQIGGTSAFLRRDDILSLVELLYALMLPSGNDAAISIALHFGSILN 129

Query: 154 --------------------------SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
                                     +  +F   M+  A K+GM+++ + N  GL  K  
Sbjct: 130 TQRKQKIASYITCDTIQGFYDDTQMSNMNRFVRQMNENAMKLGMRDSQFSNPHGLSSKAN 189

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRN 247
            +TA D   +     K  P   +  + + F  RN    N N+LL    N +GIKTG T N
Sbjct: 190 KSTASDMCRMSSAYLK-IPVLKQICNSKSFSCRNYEWFNTNQLL-HFENYNGIKTGITPN 247

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSST 307
           +G  +  S       I+ V++G    + R ++  +LI     + +L   +T      +++
Sbjct: 248 AGACLAVSYESVLGSIIVVLIGAKDQKRRFEETDKLINWVSREYSLYFNKTMYPPPRTAS 307

Query: 308 SLKKSLMIKK 317
           S  +S +IKK
Sbjct: 308 SKGRSFIIKK 317


>gi|226941642|ref|YP_002796716.1| PbpG [Laribacter hongkongensis HLHK9]
 gi|226716569|gb|ACO75707.1| PbpG [Laribacter hongkongensis HLHK9]
          Length = 286

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 117/272 (43%), Gaps = 21/272 (7%)

Query: 30  LMGKILFLSIIMISM--------ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASL 80
           L   +L  S +++++        AS +      +++V++    ++   K  +     AS+
Sbjct: 10  LTAMLLATSPLVLALPEHEMQLAASSVPRLHSSAALVVNAQTGEVLFGKNTDRMMSIASI 69

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRS 139
           TK+MT  ++ +  Q     L+  I +S+    +   +   L   +  +  + +L  +  S
Sbjct: 70  TKLMTAMVMLDSGQP----LDELITISEAEIDRLKNTSSRLAVGSVLSRREMLLLALMSS 125

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            N  + +      G    F   M+ KA+++GM +T + + +GL  +N  +TA D A +  
Sbjct: 126 ENRAAASLARTSPGGTSAFVSRMNQKARQLGMHSTRFYDPTGLDSRNT-STAEDLARMVA 184

Query: 200 LLRKNFPQYYKYFSIR--KFRYRNRII--TNHNKLLNKMHNIDGI-KTGYTRNSGFNIVT 254
              + +P   +  +    +   RNR++   N N L+ +     G+ KTGYT+ +G  +V 
Sbjct: 185 AAYR-YPLIREDTTTTDQQVYARNRMLQYRNSNALVREGQWQIGLSKTGYTQEAGRCLVM 243

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
                  P++ V +    S  R   A  + T 
Sbjct: 244 MATVGSTPLIMVFLDSEGSSARINDARNIKTW 275


>gi|319793229|ref|YP_004154869.1| peptidase s11 D-alanyL-D-alanine carboxypeptidase 1 [Variovorax
           paradoxus EPS]
 gi|315595692|gb|ADU36758.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Variovorax
           paradoxus EPS]
          Length = 394

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 100/233 (42%), Gaps = 11/233 (4%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++VID + +++   K D    P ASLTK+MT  +I E     +L  +  I +++      
Sbjct: 140 ALVIDQDTHEVLFSKNDHAVLPIASLTKLMTGLLISEA----RLPNDELITITQDDVDTE 195

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+  L   T  +  + +   +  S N  + A G    G    F  +M+ KAK +GM++
Sbjct: 196 KGSRSRLTVGTMLSRGELLHLALMSSENRAAHALGRTYPGGLSTFVSIMNAKAKMLGMKD 255

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFP-QYYKYFSIRKFRYRNRII--TNHNKL 230
           T Y   +GL  +NQ ++A+D A+L      +   +        +    NR++     N+L
Sbjct: 256 TRYVEPTGLSSRNQ-SSAQDLALLVNAAYADATVRSLSTSPEYQVEVGNRVLQFNTTNRL 314

Query: 231 LNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           +       G+ KTG+   +G  +V   +     ++ V +       R   A  
Sbjct: 315 VKSPDWEIGVQKTGFINEAGQCLVMQAKVAGRKLIMVFLDSAGKFSRIADAER 367


>gi|126455216|ref|YP_001066916.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106a]
 gi|134277355|ref|ZP_01764070.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 305]
 gi|167824963|ref|ZP_02456434.1| family S11 unassigned peptidase [Burkholderia pseudomallei 9]
 gi|217420719|ref|ZP_03452224.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           576]
 gi|226195535|ref|ZP_03791123.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|242314261|ref|ZP_04813277.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106b]
 gi|254184359|ref|ZP_04890949.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1655]
 gi|254195825|ref|ZP_04902251.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei S13]
 gi|254200295|ref|ZP_04906661.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei FMH]
 gi|254258254|ref|ZP_04949308.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1710a]
 gi|254297022|ref|ZP_04964475.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 406e]
 gi|126228858|gb|ABN92398.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106a]
 gi|134251005|gb|EBA51084.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 305]
 gi|147749891|gb|EDK56965.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei FMH]
 gi|157807411|gb|EDO84581.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 406e]
 gi|169652570|gb|EDS85263.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei S13]
 gi|184214890|gb|EDU11933.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1655]
 gi|217396131|gb|EEC36148.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           576]
 gi|225932495|gb|EEH28494.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|242137500|gb|EES23902.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106b]
 gi|254216943|gb|EET06327.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1710a]
          Length = 369

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 98/238 (41%), Gaps = 13/238 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + V+D N ++    K      P AS+TK+MT  ++ +     K  L  QI V+       
Sbjct: 119 AYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVLDS----KSPLTDQIDVTDEDRDYE 174

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +   L   +  + E  +   +  S N  + A   +  G    F   M+ KAK +GM +
Sbjct: 175 KGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMNAKAKSLGMTD 234

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI----ITNHNK 229
           T ++N++GL  +N +++ARD   +     + +P   K+ + R +            + N 
Sbjct: 235 THFENSTGLSSQN-VSSARDLVKMVNAAYQ-YPLIRKFSTDRSYEVNTGKRTLAYNSTNA 292

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L+ N   +I   KTG+   +G  +V        PIV V++       R   A  +   
Sbjct: 293 LVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRPIVMVLLDSFGKYSRFADASRVRNW 350


>gi|327489460|gb|EGF21253.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK1058]
          Length = 451

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 132/301 (43%), Gaps = 45/301 (14%)

Query: 24  IQRNIQLMGKILFLSIIMISM-ASELHAKPKY--------------SSIVIDVNKNQMTG 68
           +++ + L+G     S+  ++  A EL    K               SS+VID +   +  
Sbjct: 1   MKKKLLLLGIAFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPKSSLVIDGSTGDVVW 60

Query: 69  FKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEK 123
               DE R PAS++K+MTLY++FE ++  K+   T I  +     TA     S   +   
Sbjct: 61  EDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQATANIYEISNNKIVAG 120

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGL 182
             +T  + I   I  S+N  +     ++S ++   F   M+ KA+++GM NT + NASG 
Sbjct: 121 VDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGA 180

Query: 183 HD---------------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NR 222
                             +  TTARD AIL      + P+   Y +  K   +       
Sbjct: 181 AAVSFKGYYNPQNYDNYASNQTTARDLAILAYNFVNHHPEILDYTNKAKVTVKAGTPYEE 240

Query: 223 IITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
               +N  L      +  +DG+KTG + N  FN + +++ +D  ++AV+MG+    ++D 
Sbjct: 241 TFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKREDQRMIAVIMGVGDWSDQDG 300

Query: 279 K 279
           +
Sbjct: 301 E 301


>gi|225075807|ref|ZP_03719006.1| hypothetical protein NEIFLAOT_00823 [Neisseria flavescens
           NRL30031/H210]
 gi|224952840|gb|EEG34049.1| hypothetical protein NEIFLAOT_00823 [Neisseria flavescens
           NRL30031/H210]
          Length = 310

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 60/270 (22%), Positives = 120/270 (44%), Gaps = 23/270 (8%)

Query: 39  IIMISMASELHAKP--------KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYII 89
              +S A ++ A+           S+++ +    ++   K  +   P AS++K+M+  ++
Sbjct: 48  AFALSHADQVEAQATLAGPLLSSQSALIFNNKTGEVLYQKNPDRVMPIASISKLMSAMVV 107

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            +      L +N  I +++    +   +   L   T  T  + +   +  S N  + A G
Sbjct: 108 LDAH----LDMNEPITITEAEIDRLKGTGSRLSIGTTLTRGELLHLSLMSSENRATHALG 163

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
               G    F   M+ KA+ +GM ++ +   +GL+ +N ++TARD   +     K +P  
Sbjct: 164 RTYPGGLSAFVAAMNAKAQSLGMSSSRFYEPTGLNFQN-VSTARDLNRMVAAASK-YPLI 221

Query: 209 YK-----YFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
            K     Y S+     R +   N N L+     NI+  KTGY R +G ++V     ++ P
Sbjct: 222 RKNSTSNYGSVWTVNGR-QNYKNSNALVREGSWNIELQKTGYIREAGRSMVVKANVQNQP 280

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKT 292
           I  V++  P+S  R   A ++ +  L++++
Sbjct: 281 ITIVLLNSPSSTTRVNDARKIESWMLQRRS 310


>gi|145478811|ref|XP_001425428.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124392498|emb|CAK58030.1| unnamed protein product [Paramecium tetraurelia]
          Length = 313

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 107/271 (39%), Gaps = 40/271 (14%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNT-QIPVSKTA 110
            ++ +++D    ++   K +   R  AS+TK MT Y+  +  +  K+      + VS+ A
Sbjct: 38  AHTWVILDAQTGRLIWGKNEHSNREIASITKSMTAYVTIKICEQLKIDPTQVTVSVSEYA 97

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE--------------------- 149
                +   L+E    T    +  L+  S ND + A  E                     
Sbjct: 98  TQIGGTSSNLQEGDSLTLLDLLHGLMLPSGNDSAQAIAENFGVYLYFQSKYFQQKIDSID 157

Query: 150 ------FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
                  ++   + F   M+  A+K+G+ NT + N  GL ++   +TA D A L     K
Sbjct: 158 NDNNTIHVNNPAQYFVAEMNATAQKLGLSNTYFTNPHGLANRLNRSTAYDVAKLCYYAMK 217

Query: 204 NFPQYYKYFSIRKF--------RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
             P + +    +++        + R     N NKLL +     GIKTG T ++G  + + 
Sbjct: 218 -LPLFAQIVRTKEYSCTVTNLGQTRVLKWENTNKLLEQ--GFSGIKTGVTNDAGPCLASH 274

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITS 286
              +    + VV+   + ++R   +  LI  
Sbjct: 275 FISRKHSYILVVLNCNSKEQRWVDSCRLIDW 305


>gi|170694729|ref|ZP_02885880.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           graminis C4D1M]
 gi|170140360|gb|EDT08537.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           graminis C4D1M]
          Length = 394

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 99/240 (41%), Gaps = 17/240 (7%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + V+D N  +    K      P AS+TK+MT  ++ +     K  +  Q+ V+       
Sbjct: 143 AYVVDQNTGESLFDKNSRAVVPIASITKLMTAMVVLDS----KEPMTDQLEVTDEDRDYE 198

Query: 115 ---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S+  L   +  + E  +   +  S N  + A   +  G    F   M+ KA+++GM
Sbjct: 199 KNTGSR--LSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFLAAMNAKARQLGM 256

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNH 227
            +T ++N +GL  +N +++ARD   +     + +P   ++ + R +      R     + 
Sbjct: 257 TDTHFENPTGLTSQN-VSSARDLVKMVNAAYQ-YPLIRRFSTDRSYEVYTGKRTLAYNST 314

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           N L+ N    I   KTG+   +G  +V        P+V V++       R   A  L T 
Sbjct: 315 NALVRNPTWEIGLQKTGFINEAGECLVMQANIHGRPMVLVLLDSSGKYSRFADATRLRTW 374


>gi|124386303|ref|YP_001029035.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei NCTC
           10229]
 gi|167000634|ref|ZP_02266445.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei
           PRL-20]
 gi|167720361|ref|ZP_02403597.1| family S11 unassigned peptidase [Burkholderia pseudomallei DM98]
 gi|167739353|ref|ZP_02412127.1| family S11 unassigned peptidase [Burkholderia pseudomallei 14]
 gi|167816568|ref|ZP_02448248.1| family S11 unassigned peptidase [Burkholderia pseudomallei 91]
 gi|167846481|ref|ZP_02471989.1| family S11 unassigned peptidase [Burkholderia pseudomallei B7210]
 gi|167895058|ref|ZP_02482460.1| family S11 unassigned peptidase [Burkholderia pseudomallei 7894]
 gi|167903445|ref|ZP_02490650.1| family S11 unassigned peptidase [Burkholderia pseudomallei NCTC
           13177]
 gi|167911694|ref|ZP_02498785.1| family S11 unassigned peptidase [Burkholderia pseudomallei 112]
 gi|254177821|ref|ZP_04884476.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei ATCC
           10399]
 gi|254357958|ref|ZP_04974231.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei
           2002721280]
 gi|124294323|gb|ABN03592.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei NCTC
           10229]
 gi|148027085|gb|EDK85106.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei
           2002721280]
 gi|160698860|gb|EDP88830.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei ATCC
           10399]
 gi|243063443|gb|EES45629.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei
           PRL-20]
          Length = 363

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 98/238 (41%), Gaps = 13/238 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + V+D N ++    K      P AS+TK+MT  ++ +     K  L  QI V+       
Sbjct: 113 AYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVLDS----KSPLTDQIDVTDEDRDYE 168

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +   L   +  + E  +   +  S N  + A   +  G    F   M+ KAK +GM +
Sbjct: 169 KGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMNAKAKSLGMTD 228

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI----ITNHNK 229
           T ++N++GL  +N +++ARD   +     + +P   K+ + R +            + N 
Sbjct: 229 THFENSTGLSSQN-VSSARDLVKMVNAAYQ-YPLIRKFSTDRSYEVNTGKRTLAYNSTNA 286

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L+ N   +I   KTG+   +G  +V        PIV V++       R   A  +   
Sbjct: 287 LVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRPIVMVLLDSFGKYSRFADASRVRNW 344


>gi|126439318|ref|YP_001059634.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 668]
 gi|126218811|gb|ABN82317.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           668]
          Length = 369

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 98/238 (41%), Gaps = 13/238 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + V+D N ++    K      P AS+TK+MT  ++ +     K  L  QI V+       
Sbjct: 119 AYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVLDS----KSPLTDQIDVTDEDRDYE 174

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +   L   +  + E  +   +  S N  + A   +  G    F   M+ KAK +GM +
Sbjct: 175 KGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMNAKAKSLGMTD 234

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI----ITNHNK 229
           T ++N++GL  +N +++ARD   +     + +P   K+ + R +            + N 
Sbjct: 235 THFENSTGLSSQN-VSSARDLVKMVNAAYQ-YPLIRKFSTDRSYEVNTGKRTLAYNSTNA 292

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L+ N   +I   KTG+   +G  +V        PIV V++       R   A  +   
Sbjct: 293 LVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRPIVMVLLDSFGKYSRFADASRVRNW 350


>gi|255320984|ref|ZP_05362157.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter radioresistens
           SK82]
 gi|255301948|gb|EET81192.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter radioresistens
           SK82]
          Length = 330

 Score =  178 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 106/241 (43%), Gaps = 13/241 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             +++V+D    ++   K  +     AS+TK+MT  +  +     +L+++ +I +     
Sbjct: 88  ARAALVMDAQTGEVLFSKNTNTALPIASITKLMTAVVTSDA----RLNMSEEITLQPIDF 143

Query: 112 TQNP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                +   L+        + +L  + +S N  + A      G +  F   M+ KA+++G
Sbjct: 144 IGPKKASSTLRAGDKMNRAEVLLFALMKSENPAAAALARTYPGGKPAFVAAMNAKARELG 203

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR--NRII--TN 226
           M +  +  ++GL  +N + +ARD  IL     + +    ++ +   + +    R++   N
Sbjct: 204 MHSAKFYESTGLDARN-VASARDLGILVSAASQ-YGLIRQFSTTPTYDFNLGYRVLKSNN 261

Query: 227 HNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+ N   NI+  KTG+   +G  +V        P + V++G   +Q R+  A  L +
Sbjct: 262 TNALVRNGGWNINLSKTGFINEAGRCVVMHATVNQRPAIVVLLGASDTQSRNNDATRLFS 321

Query: 286 S 286
            
Sbjct: 322 W 322


>gi|260583723|ref|ZP_05851471.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella elegans
           ATCC 700633]
 gi|260158349|gb|EEW93417.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella elegans
           ATCC 700633]
          Length = 473

 Score =  178 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 61/255 (23%), Positives = 116/255 (45%), Gaps = 29/255 (11%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT--AA 111
           S+I++D +  ++      D+P  PAS++KMMT Y+ FE ++  KL L+T +  ++   A 
Sbjct: 71  STIMVDADTGEIVFGSNIDQPWDPASISKMMTAYMAFEAMKEGKLSLDTVVTATEEDRAI 130

Query: 112 TQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           +     S   +     +  E+ +  +   S+N  +         S+ +F   M+ K K+ 
Sbjct: 131 STIGEISNNIIVAGVDYPIEELLYMMFYPSSNVATLMVARATGLSDTEFLNKMNAKFKEW 190

Query: 170 GMQNTIYKNASGL---------------HDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           GM+NT + NASG                +++   TTARD AIL     K+FP+   +   
Sbjct: 191 GMENTKFNNASGAVASAFRGYYTPEGYNNNRYNQTTARDLAILAYHFLKDFPEITNFTKN 250

Query: 215 RKFR------YRNRIITNHNKLLNKM---HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
                     Y     T ++ +         +DG KTG + ++ FN + + + +D   + 
Sbjct: 251 PLITVMVGTPYEESFYTYNSSIPGMYQGFPGVDGFKTGSSPSAAFNHLLTAKQEDTRFIQ 310

Query: 266 VVMGMPTSQERDQKA 280
           V++G+   +++D  +
Sbjct: 311 VILGVGAWEDKDNSS 325


>gi|259502438|ref|ZP_05745340.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           antri DSM 16041]
 gi|259169581|gb|EEW54076.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           antri DSM 16041]
          Length = 412

 Score =  178 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 64/266 (24%), Positives = 109/266 (40%), Gaps = 30/266 (11%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+  ID    Q+   K  +  YP AS+TK++TL +I + +++ KL  + +I  S   A
Sbjct: 38  ARSAYAIDAESGQVLYQKNAQKTYPVASVTKILTLAVIEQDIRAHKLSWDQKITASPAVA 97

Query: 112 TQNP----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                   S + L     +T +Q + +++  SA+  + A     +GS   F   M   A 
Sbjct: 98  QMANDPRCSNVQLNAGEKYTVKQLVESMMLVSADGSTEALALADAGSTAAFNQKMQAVAH 157

Query: 168 KIGMQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFS 213
           K G+ +    N  GL               D   + +A+D A++   L + +P+  +  S
Sbjct: 158 KAGVHDAKIYNMVGLPNSYMGAHALKGVDKDAENLFSAKDIALIAKYLVEEYPETLQITS 217

Query: 214 IRKFRYR-----NRIITNHNKLLN------KMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
            +   ++        +TN N LL       K   IDG+KTG T  +G  IVT+  Y    
Sbjct: 218 TKFADFKVSADHKEHMTNINSLLPQNGAAPKDWQIDGLKTGNTDEAGKCIVTTGTYAGRR 277

Query: 263 IVAVVMGMPTSQERDQKALELITSFL 288
           ++ V +          K  +     L
Sbjct: 278 VIVVALHTDGDWNDQSKMQKEFYEAL 303


>gi|269215526|ref|ZP_06159380.1| serine-type D-Ala-D-Ala carboxypeptidase [Slackia exigua ATCC
           700122]
 gi|269131013|gb|EEZ62088.1| serine-type D-Ala-D-Ala carboxypeptidase [Slackia exigua ATCC
           700122]
          Length = 456

 Score =  178 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 53/272 (19%), Positives = 101/272 (37%), Gaps = 29/272 (10%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           + I  + ++ A+   +++ +  +  ++     D     AS+TK+MT  +  +        
Sbjct: 54  LSIDNSPDIDAE---AALAVTYDGRELFARNADSEYKIASITKIMTAIVALD-----NAS 105

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS----- 154
           L   I VS  A T   S   L+     + +  +  L+  S ND + A  E +        
Sbjct: 106 LTDTITVSDKAGTTIGSSAQLRPGDTMSLKTALQGLLVPSGNDAAVAIAETVGARLVTDA 165

Query: 155 ----EKKFAILMSNKAKKIGMQNTIYKNASGLHDK----NQITTARDQAILGILLRKNFP 206
               E  F   M+ +A +IG  +T++ N  GL       +  +TA D A +     +N  
Sbjct: 166 QPDPEGAFVDAMNARAAEIGCTDTLFTNPHGLDSDGYESDAHSTAHDVAKMTAYAMQNDT 225

Query: 207 --------QYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
                         + +    R   + + ++LL     + G+KTG    +      +   
Sbjct: 226 FRSIVGGGDVTVTVTQKDGTQRAITLISTDELLGVYDGMVGVKTGTGDVALNCFAGACER 285

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            +D I  VV+G  T + R      L+    + 
Sbjct: 286 TEDSIYTVVLGSSTEEGRFDATASLLDWAFDN 317


>gi|254804631|ref|YP_003082852.1| probable D-alanyl-D-alanine carboxypeptidase [Neisseria
           meningitidis alpha14]
 gi|254668173|emb|CBA04859.1| probable D-alanyl-D-alanine carboxypeptidase [Neisseria
           meningitidis alpha14]
          Length = 369

 Score =  178 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 115/247 (46%), Gaps = 13/247 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++V++    Q+   K  +   P AS++K+M+  ++ +      L +N  + ++    
Sbjct: 129 SQSALVVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDA----NLDMNETVTITPDEI 184

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   +   L   T  T ++ +   +  S N  + A G    G    F   M+ KA+ +G
Sbjct: 185 DRLKGTGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLG 244

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNRIITN 226
           M  + +   +GL+ +N ++TA+D +++     + +PQ     +      + +   +   N
Sbjct: 245 MYGSRFYEPTGLNFQN-VSTAKDLSLMVNAAAQ-YPQIRTNSTSNYASVQTKNGQQNYKN 302

Query: 227 HNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+   M NI+  KTGY R +G ++V     ++ P+  V++  PTS  R   A ++ +
Sbjct: 303 SNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIES 362

Query: 286 SFLEKKT 292
             L++++
Sbjct: 363 WMLQQRS 369


>gi|326201672|ref|ZP_08191543.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           papyrosolvens DSM 2782]
 gi|325988272|gb|EGD49097.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           papyrosolvens DSM 2782]
          Length = 440

 Score =  178 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 125/326 (38%), Gaps = 42/326 (12%)

Query: 29  QLMGKILFLSIIMISMASELHAK---PKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMM 84
           +++  ++   I++  +     A       S I++D     +    K D    PAS TK+ 
Sbjct: 3   KVLATLIVSFILLFQVTPAFCANLDIDAASYILMDAKTGSVLYEYKPDLKWRPASTTKIA 62

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAAT---QNPSKLYLKEKTYFTTEQGILALITRSAN 141
           T  +  +  +     L+  +  S  A +        + +      +    + AL+  SAN
Sbjct: 63  TALVALKEGK-----LDQMMTASNEAVSDIGVGGMNIGIMPGEQMSLNNLLHALLIVSAN 117

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----DKNQITTARDQAIL 197
           + +    E +   + KF   M+  A   G +NT + N  G+     D +  ++ARD A++
Sbjct: 118 ETANIISENLFNDKTKFLAEMNKFAADAGAKNTTFTNPCGIDEYEKDADHFSSARDLALI 177

Query: 198 GILLRKNFPQYYKYFSIRKF-----RYRNRII---TNHNKLLNKM-------------HN 236
                K +P + +    ++        +++      N NKLL K              + 
Sbjct: 178 AKECLK-YPLFREIIGQKQLSTLPATNKHKTWNILNNTNKLLGKSFKYGPETGDDRNQYT 236

Query: 237 IDGIKTGYTRNSGFNIVTSL-RYKDDPIVAVVMGMPTSQER--DQKALELITSFLEKKTL 293
           I G+KTG T  +G N ++S        +++VV+G+     R        L+ +  E  + 
Sbjct: 237 ITGLKTGSTSRAGANFISSAVNKDGLELISVVLGVNNKPNRSVFDFTKTLLKAGYENYS- 295

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLK 319
           +     R   +   ++K +    K+ 
Sbjct: 296 RQMIIDRSTKIQEITVKDAADGDKVD 321


>gi|239815358|ref|YP_002944268.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Variovorax
           paradoxus S110]
 gi|239801935|gb|ACS19002.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Variovorax
           paradoxus S110]
          Length = 394

 Score =  178 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 99/233 (42%), Gaps = 11/233 (4%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++VID + +++   K D    P ASLTK+MT  +I E      L  +  I +++      
Sbjct: 139 ALVIDQDTHEVLFSKNDHAVLPIASLTKLMTGLLISEAH----LPNDELITITQDDVDTE 194

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+  L   T  +  + +   +  S N  + A G    G    F  +M+ KAK +GM++
Sbjct: 195 KGSRSRLTVGTTLSRGELLHLALMSSENRAAHALGRTYPGGLATFVSIMNAKAKMLGMKD 254

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFP-QYYKYFSIRKFRYRNRII--TNHNKL 230
           T Y   +GL  +NQ ++A+D A+L      +   +        +    NR++     N+L
Sbjct: 255 TRYVEPTGLSSRNQ-SSAQDLALLVNAAYSDATVRSLSTSPEYQVEVGNRVLQFNTTNRL 313

Query: 231 LNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           +       G+ KTGY   +G  +V   +     ++ V +       R   A  
Sbjct: 314 VKSPDWEIGVQKTGYISEAGQCLVMQAKVAGRKLIMVFLDSAGKFSRIADAER 366


>gi|24372585|ref|NP_716627.1| D-alanyl-D-alanine endopeptidase [Shewanella oneidensis MR-1]
 gi|24346606|gb|AAN54072.1|AE015544_5 D-alanyl-D-alanine endopeptidase [Shewanella oneidensis MR-1]
          Length = 321

 Score =  178 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 102/244 (41%), Gaps = 15/244 (6%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KT 109
              S++V+D+  N++      D  R  AS+TK+MT  +  +     KL ++ ++ ++ K 
Sbjct: 53  AANSALVVDLKTNEILYSSNPDAVRPIASVTKLMTAMVTLDA----KLPMDEKLTINIKD 108

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                     ++  +  + ++ +L  +  S N  + +      G  K F   M+ KAK +
Sbjct: 109 TKEMRGVYSRVRIGSEISRKEMLLLTLMSSENRAAASLAHHYPGGHKAFIKAMNAKAKAL 168

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI--RKFRYRNRII--- 224
           GM+N+ +   +GL  KN +++ARD  +L     + +P   +  S   +   +        
Sbjct: 169 GMKNSRFVEPTGLSAKN-VSSARDLVVLLKA-SQGYPMLGQLSSTEKKTVTFGKPKYSLD 226

Query: 225 -TNHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
             N N+L+ K   +I   KTG+T  +G  +V         +  VV+           A  
Sbjct: 227 FRNTNRLVYKDNWDIHLTKTGFTNAAGHCLVMRTEMAKRKVAFVVLDAKGKYTHMADANR 286

Query: 283 LITS 286
           L   
Sbjct: 287 LRNW 290


>gi|325697563|gb|EGD39449.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK160]
          Length = 409

 Score =  178 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 135/330 (40%), Gaps = 42/330 (12%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +A++ +     S+I +D    ++   K    P    S+T ++T+Y+++E ++   L  +T
Sbjct: 6   VAADDYNIAAKSAIAVDATSGKILYEKDANTPIEVGSITNLLTVYLVYEAIERGDLTADT 65

Query: 103 QIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            + +S  A    A  N S + L+ K  +  +  I A +  SAN  + A  E + GSE+ F
Sbjct: 66  YVDISDYAYNLTADPNISNIPLEAK-RYKVKDLIAASLMSSANSATIALAEKVGGSEENF 124

Query: 159 AILMSNKAKKIGMQNTIYKNASGLH------------------------DKNQITTARDQ 194
             +M  K K+ G+++    N++GL+                        D     +A D 
Sbjct: 125 VQMMKAKLKEWGIKDATIVNSTGLNTLLLEYASEETDYTASASTAKKSKDTENKFSAYDL 184

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL----NKMHNIDGIKTGYTRNSGF 250
           A++   L  +FPQ     S    +     + N+N +L    N    +DG+K G +   G 
Sbjct: 185 AVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGISEKGGS 244

Query: 251 NIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELIT----SFLEKKTLKHQQTHRKD 302
           + V +       ++ VV+ +         R      L+     +F +   +   + + K 
Sbjct: 245 SFVATTTENGIRMITVVLDVEQTDGDPYARFVATASLMNYVSQNFTQTTIVAEGEAYNKS 304

Query: 303 NLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
           + +    K+  +     + ++  ++I  +A
Sbjct: 305 HSTVIDGKQKTVPAVASKDFTIIERIANQA 334


>gi|262283155|ref|ZP_06060922.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus sp. 2_1_36FAA]
 gi|262261407|gb|EEY80106.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus sp. 2_1_36FAA]
          Length = 450

 Score =  178 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 70/255 (27%), Positives = 119/255 (46%), Gaps = 30/255 (11%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT---- 109
           SS++ID N   +      DE R PAS++K+MTLY++FE +   KL  +T I  S+T    
Sbjct: 35  SSLIIDGNTGDVLWQDNIDEVRDPASMSKLMTLYLLFEAMGQGKLSEDTIIKASQTDQNI 94

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKK 168
           A     S   +     +T  + I   +  S+N  +     ++S ++   F   M++KAK+
Sbjct: 95  AGIYEISNNKIVAGVDYTISELITMTVVPSSNATTVMIANYLSNNDPDAFLDQMNSKAKE 154

Query: 169 IGMQNTIYKNASGLH---------------DKNQITTARDQAILGILLRKNFPQYYKYF- 212
           +GM NT + NASG                 +    TTARD AIL     K +P   KY  
Sbjct: 155 LGMTNTHWYNASGAAASSFKGLYTPQRYDNNAANQTTARDLAILAYNFVKKYPGILKYTN 214

Query: 213 ----SIRKFRYRNRIITNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
               +++K          +N  +      +  +DG+KTG +    FN + +++  +  I+
Sbjct: 215 KPVVTVKKGTPYEETFETYNYSVPGAKYGLEGVDGLKTGSSPRGAFNYIATVKRGEQRII 274

Query: 265 AVVMGMPTSQERDQK 279
           +V+MG+    ++D +
Sbjct: 275 SVIMGVGDWSDQDGE 289


>gi|256848581|ref|ZP_05554022.1| D-alanyl-D-alanine carboxypeptidase dacA [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256714633|gb|EEU29613.1| D-alanyl-D-alanine carboxypeptidase dacA [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 400

 Score =  178 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 124/298 (41%), Gaps = 31/298 (10%)

Query: 28  IQLMGKILFLSIIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
           +  +  ++ +  +  +     HA     +++  ID    Q+      D+    AS++K++
Sbjct: 9   VSFIITLVTVCGVCFNRLPIAHAATVDAHAAFAIDAQTGQVLYNHNGDQRLAVASMSKLL 68

Query: 85  TLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           T+ +I   + S KL  +T++ ++    K +     S + LK    +T +Q   A + +S 
Sbjct: 69  TVAVIENEISSGKLKWSTKVKITSAEAKLSTASGYSNVPLKASKQYTVKQLTQAALIKSG 128

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-------------- 186
           +  + A       + ++F   M   AK+IG+ N    N  GL + +              
Sbjct: 129 DAATIALTRAQGRNTQQFVQQMGTMAKRIGLSNYRLYNGVGLENGDMASFKLPKTAKAAE 188

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN------IDGI 240
              TA+D A +   L +N+P   K    R  R+  +   N N+LL           +DG+
Sbjct: 189 NQMTAQDVAKVARYLIQNYPAVLKITKQRTLRWDGKDYPNSNELLPGNAAAPQKVKVDGL 248

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS-FLEKKTLKHQQ 297
           KTG +  +G  +V++  Y+   I+ VVM       R  +   L    F   + ++ +Q
Sbjct: 249 KTGTSDKAGQCLVSTGTYQGHRIITVVMHANN---RFSQTKVLYEEVFANWQPVRGKQ 303


>gi|206580756|ref|YP_002237447.1| penicillin-binding protein 7 [Klebsiella pneumoniae 342]
 gi|290508576|ref|ZP_06547947.1| D-alanyl-D-alanine endopeptidase [Klebsiella sp. 1_1_55]
 gi|206569814|gb|ACI11590.1| penicillin-binding protein 7 [Klebsiella pneumoniae 342]
 gi|289777970|gb|EFD85967.1| D-alanyl-D-alanine endopeptidase [Klebsiella sp. 1_1_55]
          Length = 316

 Score =  178 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 103/259 (39%), Gaps = 15/259 (5%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQS 95
           L+    ++A+        S++++D+   ++    Q +  R  AS+TK+MT  ++ +    
Sbjct: 25  LAKTSAAVAASQPDIASGSAMIVDLATKKIIYASQPDLVRPMASITKVMTAMVVLDAH-- 82

Query: 96  KKLHLNTQIPVS-KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
             L ++  + V              ++  +  +    +L  +  S N  + +      G 
Sbjct: 83  --LPMDEMLTVDISHTPEMKGIYSRVRLNSQISRRTMLLLALMSSENRAAASLAHHYPGG 140

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
              F   M+ KA+ +GM +T Y   +GL   N ++TARD   L ++  + +P   +  + 
Sbjct: 141 YDAFIRAMNAKAQALGMTHTRYVEPTGLSVHN-VSTARDLTKL-LIASEQYPLIGQLSTT 198

Query: 215 RKFRYR------NRIITNHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           ++          +    N N L+ +   NI   KTG+T  +G  ++        P+  VV
Sbjct: 199 KEETATFAHPAYSLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLIMRTVINQRPVALVV 258

Query: 268 MGMPTSQERDQKALELITS 286
           M           A  L T 
Sbjct: 259 MDAFGKYTHFADASRLRTW 277


>gi|296171457|ref|ZP_06852743.1| serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894143|gb|EFG73903.1| serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 294

 Score =  178 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 97/255 (38%), Gaps = 23/255 (9%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
            +   P  + IV D++  Q+   + Q+    PAS  K++   +  +     ++ L++ + 
Sbjct: 39  PIPDGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVTLD-----QVSLDSTVV 93

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
                     + + +K    +T  Q +  L+  S ND +      + G E      M+ K
Sbjct: 94  ADAADTQVECNCVGVKPGRLYTARQLLDGLLLVSGNDAANTLAHMLGGPEAT-VAKMNAK 152

Query: 166 AKKIGMQNTIYKNASGLHDKNQI--TTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           A  +G  +T     SGL        +TA D A++      N P +    +     +    
Sbjct: 153 AASLGATSTHAATPSGLDGPGGSGSSTAHDLAVIFRAAMAN-PVFAHITAEPSAMFPGDH 211

Query: 222 --RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM------GMPTS 273
             ++ITN ++LL +     G KTG+T  +    V +       +V  +M      G P+ 
Sbjct: 212 GDQLITNQDELLQRYPGAIGGKTGFTDAARKTFVGAAARGGRRLVIAMMYGLVKAGGPSY 271

Query: 274 QERDQKALELITSFL 288
            +   +A  L     
Sbjct: 272 WD---QAATLFDWGF 283


>gi|325661590|ref|ZP_08150214.1| hypothetical protein HMPREF0490_00948 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472117|gb|EGC75331.1| hypothetical protein HMPREF0490_00948 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 323

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 68/271 (25%), Positives = 119/271 (43%), Gaps = 25/271 (9%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
           L +++  I +      +  +++ +  VN+ Q+   +      YPAS TK++T Y+  +Y 
Sbjct: 55  LCVAVENIELPGYTTDQQLHAAGLFGVNQEQVLYAQNLHNKLYPASTTKVLTAYVALKYG 114

Query: 94  QSKKLHLNTQIPVSKTAAT--QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
                +L+  + VS+ A T   + S   L+E    T E  +  L+  S ND + A  E I
Sbjct: 115 -----NLSDIVTVSRRAVTFDVDASVCGLQENDQITMEALLYGLLLHSGNDNAIAIAEHI 169

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
           SGS + F  LM+ +A+K+G  NT + N  GLH+ +  TTA D  ++     KN   +   
Sbjct: 170 SGSVEAFVELMNEEARKLGATNTHFTNPHGLHEADHYTTAYDLYLIFNECMKN-ETFLTM 228

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHN---------------IDGIKTGYTRNSGFNIVTSL 256
            S   +    +  T+  + L    +               I G KTG    +G  ++   
Sbjct: 229 ISRSSYAATVQNPTSGTRQLTWTPSHFYAQGLAIPPQNAVIVGGKTGTEDLAGSCLILLE 288

Query: 257 RY-KDDPIVAVVMGMPTSQERDQKALELITS 286
           +    +P +++VMG P           LI++
Sbjct: 289 KDLSGNPYISIVMGAPDKTVLYNDMTSLISA 319


>gi|254669736|emb|CBA03920.1| probable D-alanyl-D-alanine carboxypeptidase [Neisseria
           meningitidis alpha153]
          Length = 369

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 115/247 (46%), Gaps = 13/247 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++V++    Q+   K  +   P AS++K+M+  ++ +      L +N  + ++    
Sbjct: 129 SQSALVVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDA----NLDMNETVTITPDEI 184

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   +   L   T  T ++ +   +  S N  + A G    G    F   M+ KA+ +G
Sbjct: 185 DRIKGTGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLG 244

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNRIITN 226
           M  + +   +GL+ +N ++TA+D +++     + +PQ     +      + +   +   N
Sbjct: 245 MYGSRFYEPTGLNFQN-VSTAKDLSLMVNAAAQ-YPQIRTNSTSNYASVQTKNGQQNYKN 302

Query: 227 HNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+   M NI+  KTGY R +G ++V     ++ P+  V++  PTS  R   A ++ +
Sbjct: 303 SNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIES 362

Query: 286 SFLEKKT 292
             L++++
Sbjct: 363 WMLQQRS 369


>gi|291616796|ref|YP_003519538.1| PbpG [Pantoea ananatis LMG 20103]
 gi|291151826|gb|ADD76410.1| PbpG [Pantoea ananatis LMG 20103]
          Length = 315

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 60/289 (20%), Positives = 118/289 (40%), Gaps = 33/289 (11%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELH---------AKPKY---SSIVIDVNKNQMTGF 69
           +  +    L+   L +S  ++S+ ++           A+P+    S++++D+   +    
Sbjct: 1   MPAKIRFSLLTLALLVSGQVVSLPAQATTTLSQMAPIAQPQIASGSALIVDLTSGKTLFS 60

Query: 70  -KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL----KEKT 124
              D  R  AS+TK+MT  ++ +  Q     +N  + V     +Q P    +    K  +
Sbjct: 61  SHPDRVRPIASITKLMTAMVVLDAHQP----MNEMVTVD---ISQTPEMRGVFSRVKLNS 113

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
             +    ++  +  S N  + +      G    F   M+ KA+ +GM +T Y   +GL  
Sbjct: 114 QISRRSMLMLALMSSENRAAASLAHAYPGGYNAFIKAMNAKARALGMNHTHYVEPTGLSI 173

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT--NHNKLLNKM-HNI 237
           +N +++A D   L    R+ +P   +  + ++    F + +  +   N N L+ K   +I
Sbjct: 174 QN-VSSAEDLVKLLKATRE-YPLLSELSTTKEETAVFTHPSYALPFRNTNHLVYKNGWHI 231

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
              KTGYT  +G  +V     K+ P+  VV+           A  L   
Sbjct: 232 QLTKTGYTDEAGHCLVMRTMIKNRPVALVVLDAFGKYTHFADANRLRDW 280


>gi|284029293|ref|YP_003379224.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Kribbella
           flavida DSM 17836]
 gi|283808586|gb|ADB30425.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Kribbella
           flavida DSM 17836]
          Length = 380

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 96/266 (36%), Gaps = 12/266 (4%)

Query: 32  GKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIF 90
           G  L     +++  +   A    + +V D+    +   K       PAS  K +T  ++ 
Sbjct: 34  GAQLTTGSTVVAAGATPPAVHASAYVVADIGTGAVLAAKAPHAKLRPASTLKTLTALVLL 93

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             L  K       +  +   A    SK+ +     ++ +     +   S ND   A  + 
Sbjct: 94  PRLNKK-----DVVVGTNQDAGIVGSKVGVYPGLRYSVDLLFEGMFLASGNDAVNALVQH 148

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL--LRKNFPQY 208
             G        M+  A  +G  +T   + +GL    Q+++A D A+       R++F +Y
Sbjct: 149 DEGGTAGTVQRMNKLAADLGALDTHVTDPTGLDADGQVSSAYDLALFARAGLARRDFAKY 208

Query: 209 --YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
              KY +          + N NKLL       G+KTGYT  +    + + R     +V  
Sbjct: 209 AATKYTNFPLAESGTYQVANQNKLLFNYDGALGVKTGYTTLARNTFIGAARRNGHTLVVT 268

Query: 267 VMGMPTSQERDQKALELITSFLEKKT 292
           ++  P        A EL+       +
Sbjct: 269 MLNSPHGV--TGDATELLDWAFRNYS 292


>gi|312796721|ref|YP_004029643.1| D-alanyl-D-alanine-endopeptidase [Burkholderia rhizoxinica HKI 454]
 gi|312168496|emb|CBW75499.1| D-alanyl-D-alanine-endopeptidase (EC 3.4.99.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 401

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 99/237 (41%), Gaps = 13/237 (5%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-P 115
           ++D +  ++   K      P AS+TK+MT  ++ +     K  LN ++ V+         
Sbjct: 153 MVDQHTGEVLYDKNSASVVPIASITKLMTAMVVLDS----KAPLNERLTVTDEDRDYEKG 208

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           +   L   +  + E  +   +  S N  + A   +  G    F + M+ KA ++GM  T 
Sbjct: 209 TGSRLSIGSTLSREDMLHIALMASENRAAAALSRYYPGGRPGFIVAMNRKAAELGMAQTH 268

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNKLL 231
           ++NA+GL  +N +++ARD   +     + +P   ++ + R +      R     + N L+
Sbjct: 269 FQNATGLTSQN-VSSARDLVKMVNAAYQ-YPLIRQFSTDRSYDVFTGKRTLAYNSTNALV 326

Query: 232 -NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
            N   +I   KTG+   +G  +V        P++ V++       R   A  L    
Sbjct: 327 RNASWDIGLQKTGFINEAGECLVMQATIHGRPVIMVLLDSFGKYSRFADAQRLRNWM 383


>gi|194467285|ref|ZP_03073272.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
           100-23]
 gi|194454321|gb|EDX43218.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
           100-23]
          Length = 403

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 145/342 (42%), Gaps = 35/342 (10%)

Query: 29  QLMGKILFLSIIMISMASELHAK---PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
           +L   IL L ++++  +  + A       ++I+ D +  Q+   +  D+    AS+TK++
Sbjct: 3   KLTVFILSLFMMLMGGSQSVLANNRIDASAAIMADASTGQIIYKRNVDKALPVASITKLL 62

Query: 85  TLYIIFEYLQSKKLHLNTQIPVS-KTAATQN---PSKLYLKEKTYFTTEQGILALITRSA 140
           T+ +I + +Q K+L  +TQ+ ++ + AA  N    S + LK    ++    I A + +SA
Sbjct: 63  TILVIEDEIQQKQLSWDTQVKITPEIAAISNDAAYSSIGLKSGQSYSVRTLINAALVKSA 122

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-------------- 186
           +  + A          +F + M  KAKKIGM  T   N+ GL + +              
Sbjct: 123 DGATVALATATGDGTDEFNLKMMQKAKKIGMTKTNIVNSVGLDNGDMKSFKLADLPNNAA 182

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLLNKMHN----- 236
              +ARD AIL     K++P+  +  + ++ ++     + +   N NK+L          
Sbjct: 183 NTMSARDVAILSQYFVKHYPELLQITAQKEVKFQIAKDQVKTEKNLNKMLPGEQYVVKGV 242

Query: 237 -IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP--TSQERDQKALELITSFLEKKTL 293
            IDG+KTG + ++G    ++ +Y+   I+ V++         R +    L      +  L
Sbjct: 243 TIDGLKTGTSDSAGACFASTGKYQGHRIITVILHSKGSNKDNRFKATQNLYKILKTEDHL 302

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           +  +          +      +K   +  + +   D K   T
Sbjct: 303 QKIKVPSSVTTRKVANGVEKTMKLTPQQVTIWSPYDTKTDYT 344


>gi|313884857|ref|ZP_07818609.1| serine-type D-Ala-D-Ala carboxypeptidase [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619548|gb|EFR30985.1| serine-type D-Ala-D-Ala carboxypeptidase [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 394

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/281 (20%), Positives = 112/281 (39%), Gaps = 31/281 (11%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S I ID   N++   ++    YP AS++K+++ Y++++ +   KL ++  I +     
Sbjct: 70  ARSYIAIDQETNRVLAQQEGNKPYPIASMSKIISTYLVYQAIDEGKLSMDQMISIDPAII 129

Query: 112 TQ-----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
                  N S + L     ++ E  +  ++  S ND ++A    I GSE+     MS+  
Sbjct: 130 DNYTSNPNLSNVGLVADQEYSVEDLLNGVLLSSGNDATSALMWQIYGSEEAGVNAMSDLL 189

Query: 167 KKIGMQNTIYKNASGLH---------------DKNQITTARDQAILGILLRKNFPQYYKY 211
              G+ N    + SG                 +     +A D A++   L  +FPQ    
Sbjct: 190 HSWGINNFKLVSVSGTPNIELAENIRIPGTGENDENTMSAADIALVAQHLITDFPQVLDI 249

Query: 212 FSIRKFRYR-----NRIITNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
            +   ++++      + + N+N L          I G+K+G+T  +G   V +       
Sbjct: 250 TNSDSYQFKAGTDYEQTLVNNNLLRAGQEYGRDGITGLKSGFTDGAGRCFVATSTENGRK 309

Query: 263 IVAVVMGMPTSQE-RDQKALELITSFLEKKTLKHQQTHRKD 302
           ++AV MG  T Q     +   L+   L+   L   +    +
Sbjct: 310 VIAVTMGTFTDQSNSYWETEILLDELLKFPDLYKNEALPTN 350


>gi|327393222|dbj|BAK10644.1| penicillin-binding protein 7 precursor PbpG [Pantoea ananatis
           AJ13355]
          Length = 315

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/289 (20%), Positives = 118/289 (40%), Gaps = 33/289 (11%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELH---------AKPKY---SSIVIDVNKNQMTGF 69
           +  +    L+   L +S  ++S+ ++           A+P+    S++++D+   +    
Sbjct: 1   MPAKIRFSLLTLALLVSGQVVSLPAQATTTLSQMAPIAQPQIASGSALIVDLTSGKTLFS 60

Query: 70  -KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL----KEKT 124
              D  R  AS+TK+MT  ++ +  Q     +N  + V     +Q P    +    K  +
Sbjct: 61  SHPDRVRPIASITKLMTAMVVLDAHQP----MNEMVTVD---ISQTPEMRGVFSRVKLNS 113

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
             +    ++  +  S N  + +      G    F   M+ KA+ +GM +T Y   +GL  
Sbjct: 114 QISRRSMLMLALMSSENRAAASLAHAYPGGYNAFIKAMNAKARALGMNHTHYVEPTGLSI 173

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT--NHNKLLNKM-HNI 237
           +N +++A D   L    R+ +P   +  + ++    F + +  +   N N L+ K   +I
Sbjct: 174 QN-VSSAEDLVKLLKATRE-YPLLGELSTTKEETAVFTHPSYALPFRNTNHLVYKNGWHI 231

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
              KTGYT  +G  +V     K+ P+  VV+           A  L   
Sbjct: 232 QLTKTGYTDEAGHCLVMRTMIKNRPVALVVLDAFGKYTHFADANRLRDW 280


>gi|319939487|ref|ZP_08013847.1| D-Alanyl-D-Alanine carboxypeptidase [Streptococcus anginosus
           1_2_62CV]
 gi|319811473|gb|EFW07768.1| D-Alanyl-D-Alanine carboxypeptidase [Streptococcus anginosus
           1_2_62CV]
          Length = 458

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 130/289 (44%), Gaps = 37/289 (12%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKY-------SSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           +  +G I   +  ++ MA +++   K        SS+++D N   +      DE R PAS
Sbjct: 12  VLCVGTITIHADELVDMAQKMYPDEKVNPINRPKSSLIVDANTGNILWQDNIDEVRDPAS 71

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYFTTEQGILAL 135
           ++K+MTLY++FE +Q  KL  NT I  +      A     S   +     +T  + I   
Sbjct: 72  MSKLMTLYLVFEAIQQGKLSENTVIKATPRDEAIAKIYEISNNKIVAGVDYTVSELITMT 131

Query: 136 ITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGLH----------- 183
              S+N  +     ++S ++   F  +M+ KAK +GM NT + NASG             
Sbjct: 132 AVPSSNATTVMLANYLSNNDPDTFLDMMNAKAKALGMTNTKWFNASGAAAVSFKGLYTPQ 191

Query: 184 ----DKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLL--- 231
               +    TTARD AILG    KN+P    Y      +++K          +N  L   
Sbjct: 192 RYDNNAANQTTARDLAILGYHFVKNYPNILNYTNKPVVTVKKGTPYEETFETYNYSLPGA 251

Query: 232 -NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
              +  ++G+KTG +    FN + +++  +  +++V+MG+    +++ +
Sbjct: 252 KYGIEGVEGLKTGSSPRGAFNYIATIKRGEQRLISVIMGVGDWADQNGE 300


>gi|311106462|ref|YP_003979315.1| D-alanyl-D-alanine endopeptidase 1 [Achromobacter xylosoxidans A8]
 gi|310761151|gb|ADP16600.1| D-alanyl-D-alanine endopeptidase 1 [Achromobacter xylosoxidans A8]
          Length = 331

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 110/238 (46%), Gaps = 15/238 (6%)

Query: 53  KYSSIVI-DVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK-- 108
           K S+I++ D++ +++   + +   R  AS+TK+MT   + +      L ++  I +    
Sbjct: 91  KSSTILVQDLDTSEVLFARNEGAVRPIASITKLMTALTLVKAG----LPMDEIITIDASD 146

Query: 109 -TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
             +A++ PS+  L   T  +    +   +  S N  + A G   +G    F   M+ +A+
Sbjct: 147 TRSASELPSR--LTAGTKLSRADLLRLALVPSENSAAQALGRTYTGGSAAFVAAMNAEAR 204

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
            +GM ++ +   SGL ++NQ ++ARD   L +      P   +Y     ++   +   N 
Sbjct: 205 ALGMTDSSFAEPSGLSNENQ-SSARDLVKL-LAAISAQPLISQYTGETSYQAAGQTFRNT 262

Query: 228 NKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP-TSQERDQKALEL 283
           N L+ +   +I   KTG TR +G  +V +++     +  V++    TS  R   A+ L
Sbjct: 263 NILVGRPQWDILVSKTGTTREAGDCLVMAVKVGKRNLAMVLLNAQGTSGSRFGDAVRL 320


>gi|237734723|ref|ZP_04565204.1| D-alanyl-D-alanine carboxypeptidase [Mollicutes bacterium D7]
 gi|229382051|gb|EEO32142.1| D-alanyl-D-alanine carboxypeptidase [Coprobacillus sp. D7]
          Length = 352

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 111/254 (43%), Gaps = 19/254 (7%)

Query: 31  MGKILFLSIIMISMASELHAKPKYS--------SIVIDVNKNQMTGFKQ-DEPRYPASLT 81
           +   L + I +I+  + + A             ++ ID     +   K  DE  YPAS+T
Sbjct: 5   ILSFLLVGICLIATLTPIRALENSEDIGLTCDYAVAIDAKSGLVLYNKNMDERMYPASMT 64

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSK--TAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           K+MT+ +  E +   K    T I  S   T      S    +     T E  +   I  S
Sbjct: 65  KVMTVILALELMDDMKKT--TVITQSDIDTVWETGASSANFEVGETVTYEDLLYGAILPS 122

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
             D + A    + GS++ F   M+  A+K+ +++T + N +G+HD+N  TT  D A++  
Sbjct: 123 GADATRALANNLCGSQEAFVDKMNELAQKLNLKDTHFVNTTGIHDENHYTTVHDMALIVQ 182

Query: 200 LLRKN------FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
              +N      + Q YK  S    ++ N+ + N  +    + +I G K+GYT  +   + 
Sbjct: 183 YAIQNEDFKNIYAQRYKTSSNGLHQWVNKSMYNAKRAKINVDDILGCKSGYTNEAKSCLS 242

Query: 254 TSLRYKDDPIVAVV 267
           +  R  D+ I+ +V
Sbjct: 243 SLNRVNDNEIITIV 256


>gi|333025663|ref|ZP_08453727.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces sp.
           Tu6071]
 gi|332745515|gb|EGJ75956.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces sp.
           Tu6071]
          Length = 308

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 62/284 (21%), Positives = 113/284 (39%), Gaps = 26/284 (9%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
            G +L   ++  + A+   +     + ++D +  +    K  D  R  AS TK+MT  ++
Sbjct: 17  AGAVLVAPLVGTAQAASAPSVSAKGAFLLDTSSGKTLYSKAADTKRQMASTTKVMTATVV 76

Query: 90  FEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
            +   +K L+L+ ++ + +        +  S   L+     T  Q + A +  S  D + 
Sbjct: 77  LD---TKGLNLDKKVTIKQAYRDYVVKKGASTSDLRTGDKVTVRQLLYATLLPSGCDAAY 133

Query: 146 AFGEFISGS------EKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-QITTARDQAILG 198
           A  +              F   M+ KAK + M+NT Y +  G+  K+   TT RD ++L 
Sbjct: 134 ALADTFGTGKTASARTANFISKMNAKAKSLKMKNTSYDSFDGIPTKSKNYTTPRDASLLA 193

Query: 199 ILLRK--NFPQYYKYFSIRK------FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
               K   F    K  S ++       + R     N NKLL       GIKTG    SG 
Sbjct: 194 RHALKSSTFRTVVKSKSTKQKATASNGKSRTYTWYNTNKLLGSYKGAIGIKTGTASGSGP 253

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
            +V +       +  V++      +R + A +++    +  + K
Sbjct: 254 CLVFAATRNGKTVAGVIL---NDSKRFEDAAKIMDYAFKSNSAK 294


>gi|209522105|ref|ZP_03270754.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. H160]
 gi|209497459|gb|EDZ97665.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. H160]
          Length = 396

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 98/240 (40%), Gaps = 17/240 (7%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + VID N  +    K      P AS+TK+MT  ++ +     K  +  QI V+       
Sbjct: 145 AYVIDQNSGESLFDKNSRAVVPIASITKLMTAMVVLDS----KEPMTDQIEVTDEDRDYE 200

Query: 115 ---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S+  L   +  + E  +   +  S N  + A   +  G    F   M+ KAK++GM
Sbjct: 201 KNTGSR--LSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFLAAMNAKAKQLGM 258

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNH 227
            +T ++N +GL   N +++ARD   +     + +P   K+ +   +      R     + 
Sbjct: 259 NDTHFENPTGLTSMN-VSSARDLVKMVNAAYQ-YPLIRKFSTDHSYDVYTGKRTLAYNST 316

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           N L+ N   +I   KTG+   +G  +V        P++ V++       R   A  L T 
Sbjct: 317 NALVRNPTWDIGLQKTGFINEAGECLVMQATIHGRPMILVLLDSSGKYSRFADATRLRTW 376


>gi|53723811|ref|YP_103337.1| D-alanyl-D-alanine endopeptidase [Burkholderia mallei ATCC 23344]
 gi|76810679|ref|YP_334127.1| peptidase [Burkholderia pseudomallei 1710b]
 gi|52427234|gb|AAU47827.1| D-alanyl-D-alanine endopeptidase, putative [Burkholderia mallei
           ATCC 23344]
 gi|76580132|gb|ABA49607.1| family S11 unassigned peptidase [Burkholderia pseudomallei 1710b]
          Length = 394

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 98/238 (41%), Gaps = 13/238 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + V+D N ++    K      P AS+TK+MT  ++ +     K  L  QI V+       
Sbjct: 144 AYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVLDS----KSPLTDQIDVTDEDRDYE 199

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +   L   +  + E  +   +  S N  + A   +  G    F   M+ KAK +GM +
Sbjct: 200 KGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMNAKAKSLGMTD 259

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI----ITNHNK 229
           T ++N++GL  +N +++ARD   +     + +P   K+ + R +            + N 
Sbjct: 260 THFENSTGLSSQN-VSSARDLVKMVNAAYQ-YPLIRKFSTDRSYEVNTGKRTLAYNSTNA 317

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L+ N   +I   KTG+   +G  +V        PIV V++       R   A  +   
Sbjct: 318 LVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRPIVMVLLDSFGKYSRFADASRVRNW 375


>gi|326792977|ref|YP_004310798.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
           DSM 5427]
 gi|326543741|gb|ADZ85600.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
           DSM 5427]
          Length = 432

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/316 (23%), Positives = 131/316 (41%), Gaps = 31/316 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGFKQD-EPRYPAS 79
           +++++ ++  +  L I     +    AKP      +I+I+   N +   K      YPAS
Sbjct: 1   MKKSVYVLTFLFILCI-----SPSFLAKPTVEARGAILIEAKTNTILYEKNAYSKFYPAS 55

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT---QNPSKLYLKEKTYFTTEQGILALI 136
           +TK++T  II E L    +     I  S+ +     ++ S++ LK    +    G+  L+
Sbjct: 56  ITKLLTTLIIEEQLSENHI-----ITKSQNSVNTIPKDSSEIGLKIGDSYNKVNGLYGLL 110

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S N ++       SGS   FA LM+ +AK +G +NT + N  G HD N  TT  D A 
Sbjct: 111 LGSDNFIAHDLALAHSGSISNFAELMNTRAKALGAKNTHFTNPHGYHDPNHYTTPYDMAQ 170

Query: 197 LGILLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLLNK-----MHNIDGIKTGYT 245
           +      N P   K     +F +      +   I N ++LL          +   KTGY 
Sbjct: 171 IAKGAFDN-PTVQKIAGTAQFNFYVNNKNKYIPIKNTSRLLKSETPYYNPAVVACKTGYH 229

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQ-QTHRKDNL 304
            ++G  +V    Y D  ++A VM   T  +      +L         ++ +   +   N 
Sbjct: 230 SDAGQTLVAKAVYGDMELIAAVMYEKTPNQ-YIDVNKLFDYAKTYYGVEQKSDIYTLKNK 288

Query: 305 SSTSLKKSLMIKKLKR 320
           + T   +  + + +++
Sbjct: 289 TITPWSEPSITRAVEK 304


>gi|171466626|gb|ACB46501.1| D-ala, D-ala carboxypeptidase [Actinomadura kijaniata]
          Length = 309

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 114/299 (38%), Gaps = 36/299 (12%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS------------IVIDVNKNQMTGFKQ 71
           ++ + +    +   + ++    +  HA+P  S+            +++DV   ++   + 
Sbjct: 1   MRSSARCAVAVALAAPMVAVPVATAHAEPAVSAKAGPSGVYAKSALLLDVGAKKVRWSRS 60

Query: 72  DE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKT 124
               R   S+TK+MT Y++   ++S    L+ +I V +             S   L    
Sbjct: 61  PHTKRRIGSITKVMTAYVV---IKSGN--LDRKITVQRKHVDYLRGNGAGGSSAGLVVGD 115

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
             T  Q + AL+  S  D +    +      K F   M+  A+ + M NT Y N  G+  
Sbjct: 116 RLTVRQLLRALMLPSGCDAAYVLADAYGPGWKGFVAKMNKTARGLKMTNTKYANFDGIDW 175

Query: 185 KN--QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI------ITNHNKLLNKMHN 236
           K     +TA DQ  L     K   ++      R +R            TN N LL K   
Sbjct: 176 KGATMYSTAYDQTRLAAAAMK-LKEFRSVVGTRSYRVPPTSTTHIYNWTNTNALLGKYKG 234

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE---RDQKALELITSFLEKKT 292
           + G+KTG+T  +G + +   +     +V +V+   +      R   A +++      ++
Sbjct: 235 MTGVKTGFTNMAGASFMFGAKRGGRELVGIVLNSGSGSYKSRRFTDASKILNWGFGVRS 293


>gi|187924564|ref|YP_001896206.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           phytofirmans PsJN]
 gi|187715758|gb|ACD16982.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           phytofirmans PsJN]
          Length = 395

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 100/240 (41%), Gaps = 17/240 (7%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + VID N  +    K      P AS+TK+MT  ++ +     K  +  QI V+       
Sbjct: 144 AYVIDQNSGESLFDKNSRAVVPIASITKLMTAMVVLDS----KEPMTDQIEVTDEDRDYE 199

Query: 115 ---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S+  L   +  + E  +   +  S N  + A   +  G    F   M+ KAK++GM
Sbjct: 200 KNTGSR--LSVGSVLSREDMLHIALMASENRAAAALSRYFPGGRPAFLAAMNAKAKQLGM 257

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNH 227
            +T ++N +GL  +N +++ARD   +     + +P   ++ +   +      R+    + 
Sbjct: 258 TDTHFENPTGLTSQN-VSSARDLVKMVNAAYQ-YPIIRRFSTDHSYEVYTGKRSLAYNST 315

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           N L+ N   +I   KTG+   +G  +V        P++ V++       R   A  L T 
Sbjct: 316 NALVRNPTWDIGLQKTGFINEAGECLVMQATIHGRPMIMVLLDSSGKYSRFADATRLRTW 375


>gi|262379926|ref|ZP_06073081.1| D-alanyl-D-alanine endopeptidase [Acinetobacter radioresistens
           SH164]
 gi|262298120|gb|EEY86034.1| D-alanyl-D-alanine endopeptidase [Acinetobacter radioresistens
           SH164]
          Length = 352

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 106/241 (43%), Gaps = 13/241 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             +++V+D    ++   K  +     AS+TK+MT  +  +     +L+++ +I +     
Sbjct: 110 ARAALVMDAQTGEVLFSKNTNTALPIASITKLMTAVVTSDA----RLNMSEEITLQPIDF 165

Query: 112 TQNP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                +   L+        + +L  + +S N  + A      G +  F   M+ KA+++G
Sbjct: 166 IGPKKASSTLRAGDKMNRAEVLLFALMKSENPAAAALARTYPGGKPAFVAAMNAKARELG 225

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR--NRII--TN 226
           M +  +  ++GL  +N + +ARD  IL     + +    ++ +   + +    R++   N
Sbjct: 226 MHSAKFYESTGLDARN-VASARDLGILVSAASQ-YGLIRQFSTTPTYDFNLGYRVLKSNN 283

Query: 227 HNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+ N   NI+  KTG+   +G  +V        P + V++G   +Q R+  A  L +
Sbjct: 284 TNALVRNGGWNINLSKTGFINEAGRCVVMHATVNQRPAIVVLLGASDTQSRNNDATRLFS 343

Query: 286 S 286
            
Sbjct: 344 W 344


>gi|183981810|ref|YP_001850101.1| D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium marinum M]
 gi|183175136|gb|ACC40246.1| D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium marinum M]
          Length = 290

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 95/255 (37%), Gaps = 23/255 (9%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
            +   P  + IV D++  Q+   + Q+    PAS  K++   +  + L      LN+ + 
Sbjct: 35  PIPDGPAQTWIVADLDTGQVLAGRDQNVTHPPASTIKVLLALVALDELD-----LNSTVV 89

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
             +       + + +K    +T  Q +  L+  S ND +    + + G +      M+ K
Sbjct: 90  ADEADTHVECNCVGVKAGHTYTARQLLDGLLLVSGNDAANTLAQMLGGQDAA-VAKMNAK 148

Query: 166 AKKIGMQNTIYKNASGLHDKNQ--ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           A  +G  NT     SGL        +TA D A++      N P +    +     +    
Sbjct: 149 AAALGAMNTHAATPSGLDGPGGSGWSTAHDLAVIFRTAMAN-PVFAHITAEPSAMFPGED 207

Query: 222 --RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM------GMPTS 273
               I N ++LL +     G KTGYT  +    V +       +V  +M      G PT 
Sbjct: 208 GEHPIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARNGRRLVIAMMYGLVKEGGPTY 267

Query: 274 QERDQKALELITSFL 288
            +   +A  L     
Sbjct: 268 WD---QAGSLFDWGF 279


>gi|118617619|ref|YP_905951.1| D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium ulcerans
           Agy99]
 gi|118569729|gb|ABL04480.1| D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium ulcerans
           Agy99]
          Length = 290

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 97/255 (38%), Gaps = 23/255 (9%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
            +   P  + IV D++  Q+   + Q+    PAS  K++   +  +     +L+LN+ + 
Sbjct: 35  PIPDGPAQTWIVADLDTGQVLAGRDQNVTHPPASTIKVLLALVALD-----ELNLNSTVV 89

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
             +       + + +K    +T  Q +  L+  S ND +    + + G +      M+ K
Sbjct: 90  ADEADTHVECNCVGVKAGHTYTARQLLDGLLLVSGNDAANTLAQLLGGQDAA-VAKMNAK 148

Query: 166 AKKIGMQNTIYKNASGLHDKNQ--ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           A  +G  NT     SGL        +TA D A++      N P +    +     +    
Sbjct: 149 AAALGAMNTHAATPSGLDGPGGSGWSTAHDLAVIFRTAMAN-PVFAHITAEPSAMFPGED 207

Query: 222 --RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM------GMPTS 273
               I N ++LL +     G KTGYT  +    V +       +V  +M      G PT 
Sbjct: 208 GEHPIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARNGRRLVIAMMYGLVKEGGPTY 267

Query: 274 QERDQKALELITSFL 288
            +   +A  L     
Sbjct: 268 WD---QAGSLFDWGF 279


>gi|312867167|ref|ZP_07727377.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis F0405]
 gi|311097296|gb|EFQ55530.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis F0405]
          Length = 443

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 131/295 (44%), Gaps = 42/295 (14%)

Query: 27  NIQLMGKILFLSII-----MISMASELHAKP-------KYSSIVIDVNKNQMTGFKQ-DE 73
           +I L+  +L   I+     ++ MA +++           +SS++ID N   +      DE
Sbjct: 3   HICLLLSLLCQPILASADELVDMAQKMYPNDNVQAINRPHSSLIIDGNTGNVLWKDNIDE 62

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQI--PVSKTAATQ--NPSKLYLKEKTYFTTE 129
           PR PAS++K+MTLY++FE + S K+  +T I    S  A  +    S   +     +T  
Sbjct: 63  PRDPASMSKLMTLYLLFEDMASGKIGKDTVIKATASDQAIGKIYEISNNNIVAGVDYTIP 122

Query: 130 QGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGLH----- 183
           + I   +  S+N  +      +S ++   F   M+ KAK++GM NT++ N SG       
Sbjct: 123 ELITMTVVPSSNVSTLMLANLMSNNDPDAFIERMNAKAKELGMTNTVWNNPSGAAISTLQ 182

Query: 184 ----------DKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHN 228
                     D    TTARD  IL       +P    Y      +++K          +N
Sbjct: 183 GYYPVNNYPNDAANQTTARDLGILVYHFINQYPDILNYTNQAQVTVKKGTPYEETFDTYN 242

Query: 229 KLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
             L      +  +DG+KTG +    FN + +++  +  ++AV+MG+    ++D +
Sbjct: 243 YSLPGAKYALKGVDGLKTGSSPRGAFNYIATIKRGNQRLIAVIMGVGDWADQDGE 297


>gi|299534813|ref|ZP_07048142.1| penicillin-binding protein dacF precursor [Lysinibacillus
           fusiformis ZC1]
 gi|298729658|gb|EFI70204.1| penicillin-binding protein dacF precursor [Lysinibacillus
           fusiformis ZC1]
          Length = 278

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 102/220 (46%), Gaps = 17/220 (7%)

Query: 64  NQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPSKLYL 120
            ++   K  D   YPASLTK+MT  +  E      L   T +     A    QN S    
Sbjct: 46  GEVLYEKNADAIIYPASLTKIMTAIVAIEMTD--NLQTQTIVEPQTIANYTAQNASMAGF 103

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           +   + TTE  +   +  S  D +    + ++GSE KF  LM+NKA+++GM +T + N S
Sbjct: 104 QAGDFVTTEDLLYGTLLASGADATGTLADAVAGSEGKFVTLMNNKAQELGMHDTYFVNTS 163

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN----HNKLLNKMHN 236
           GLHD+  +++ RD + L     +N P +Y+ F+ + +      + N     N L  K+  
Sbjct: 164 GLHDEAHVSSVRDISKLLRYALEN-PTFYQIFTSKSYT---TYVPNQLIITNSLFTKLPG 219

Query: 237 ----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
               I G KTGYT  +G  + T +  +    + +    P+
Sbjct: 220 LDSPIIGGKTGYTPEAGLCLATIIEKEGKSFLFITTNAPS 259


>gi|91792455|ref|YP_562106.1| D-alanyl-D-alanine endopeptidase [Shewanella denitrificans OS217]
 gi|91714457|gb|ABE54383.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Shewanella denitrificans OS217]
          Length = 298

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/273 (20%), Positives = 113/273 (41%), Gaps = 23/273 (8%)

Query: 29  QLMGKILFLSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKM 83
           +++ K L L  I+  ++  ++A        S +++D+N +++      +   P AS+TK+
Sbjct: 12  RVLVKPLVLGAILFCLSPHIYAAQQELASTSGMLVDLNTDEVLYASNPDRVMPIASVTKL 71

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSA 140
           MT  +  +     KL L  +I +      +     S++ +   +  + +  +L  +  S 
Sbjct: 72  MTAMVTLDA----KLPLEQKISIKINETKEMRNVYSRVRI--GSELSRKDMLLLALMSSE 125

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           N  + +      G    F   M++KAK +GM  + +   +GL  KN +++ARD  +L   
Sbjct: 126 NRAAASLAHHYPGGYAAFIRAMNDKAKALGMTKSSFVEPTGLSRKN-VSSARDLVMLLKA 184

Query: 201 LRKNFPQYYKYFSI--RKFRYRNRII----TNHNKLL-NKMHNIDGIKTGYTRNSGFNIV 253
             + +P   +  S   +   + N        N N+L+     NI   KTG+T ++G  +V
Sbjct: 185 -SEGYPLLGELSSTDKKTVTFSNPWYKLDFRNSNRLVFKNDWNIQLTKTGFTNDAGRCLV 243

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
                    +  VV+           A  L   
Sbjct: 244 MRTEMNKRQVAFVVLDAFGKLTHLADANRLRNW 276


>gi|302520562|ref|ZP_07272904.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB78]
 gi|302429457|gb|EFL01273.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB78]
          Length = 308

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 113/284 (39%), Gaps = 26/284 (9%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
            G +L   ++  + A+   +     + ++D +  +    K  D  R  AS TK+MT  ++
Sbjct: 17  AGAVLVAPLVGTAQAASAPSVSAKGAFLLDTSSGKTLYSKAADTKRQMASTTKVMTATVV 76

Query: 90  FEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
            +   +K L+L+ +I + +        +  S   L+     T  Q + A +  S  D + 
Sbjct: 77  LD---TKGLNLDKKITIKQAYRDYVVKKGASTSDLRTGDKVTVRQLLYATLLPSGCDAAY 133

Query: 146 AFGEFISGS------EKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-QITTARDQAILG 198
           A  +              F   M+ KAK + M+NT Y +  G+  K+   TT RD ++L 
Sbjct: 134 ALADTFGTGKTASARTANFISKMNAKAKSLKMKNTSYDSFDGIPTKSKNYTTPRDASLLA 193

Query: 199 ILLRK--NFPQYYKYFSIRK------FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
               K   F    K  S ++       + R     N NKLL       GIKTG    SG 
Sbjct: 194 RHALKSSTFRTVVKSKSTKQKATASNGKSRTYTWYNTNKLLGSYKGAIGIKTGTASGSGP 253

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
            +V +       +  V++      +R + A +++    +  + K
Sbjct: 254 CLVFAATRNGKTVAGVIL---NDSKRFEDAAKIMDYAFKSNSAK 294


>gi|318062549|ref|ZP_07981270.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SA3_actG]
 gi|318081336|ref|ZP_07988668.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SA3_actF]
          Length = 308

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 113/284 (39%), Gaps = 26/284 (9%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
            G +L   ++  + A+   +     + ++D +  +    K  D  R  AS TK+MT  ++
Sbjct: 17  AGAVLVAPLVGTAQAASAPSVSAKGAFLLDTSSGKTLYSKAADTKRQMASTTKVMTATVV 76

Query: 90  FEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
            +   +K L+L+ +I + +        +  S   L+     T  Q + A +  S  D + 
Sbjct: 77  LD---TKGLNLDKKITIKQAYRDYVVKKGASTSDLRTGDKVTVRQLLYATLLPSGCDAAY 133

Query: 146 AFGEFISGS------EKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-QITTARDQAILG 198
           A  +              F   M+ KAK + M+NT Y +  G+  K+   TT RD ++L 
Sbjct: 134 ALADTFGTGKTASARTANFISKMNAKAKSLKMKNTSYDSFDGIPTKSKNYTTPRDASLLA 193

Query: 199 ILLRK--NFPQYYKYFSIRK------FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
               K   F    K  S ++       + R     N NKLL       GIKTG    SG 
Sbjct: 194 RHALKSSTFRTVVKSKSTKQKATASNGKSRTYTWYNTNKLLGSYKGAIGIKTGTASGSGP 253

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
            +V +       +  V++      +R + A +++    +  + K
Sbjct: 254 CLVFAATRNGKTVAGVIL---NDSKRFEDAAKIMDYAFKSNSAK 294


>gi|325686780|gb|EGD28805.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK72]
          Length = 409

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 133/330 (40%), Gaps = 42/330 (12%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +A++       S++ +D    ++   K    P    S+T ++T+Y+++E +    L  +T
Sbjct: 6   VAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLLTVYLVYEAIDRGDLTADT 65

Query: 103 QIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            + +S  A    +  N S + L+ K  +  +  I A +  S+N  + A  E + GSE+ F
Sbjct: 66  YVDISDYAYNLTSNPNISNVPLEAK-RYKVKDLIAASLMSSSNSATIALAEKVGGSEENF 124

Query: 159 AILMSNKAKKIGMQNTIYKNASGLH------------------------DKNQITTARDQ 194
             +M  K K+ G+++    N++GL+                        D     +A D 
Sbjct: 125 VEMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYSASASTSKKSKDTENKFSAYDL 184

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL----NKMHNIDGIKTGYTRNSGF 250
           A++   L  +FPQ     S    +     + N+N +L    N    +DG+K G +   G 
Sbjct: 185 AVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGSSDKGGS 244

Query: 251 NIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELIT----SFLEKKTLKHQQTHRKD 302
           + V +       ++ VV+ +         R      L+     +F +   +   + + K 
Sbjct: 245 SFVATTTENGIRMITVVLDVEQTDGDPYARFVATASLMNYVSQNFTQTTIVAEGEAYNKS 304

Query: 303 NLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
             +    K+  +    ++ ++  ++I  +A
Sbjct: 305 KSTVIDGKQKTVPAVARKDFTIIERIANQA 334


>gi|269213993|ref|ZP_05983348.2| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           cinerea ATCC 14685]
 gi|269144751|gb|EEZ71169.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           cinerea ATCC 14685]
          Length = 316

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 117/247 (47%), Gaps = 13/247 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++V++    Q+   K  +   P AS++K+M+  ++ +      L+++  I ++    
Sbjct: 76  SQSALVVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDA----NLNMDETITITTDEI 131

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   +   L   T  T ++ +   +  S N  + A G    G    F   M+ KA+ +G
Sbjct: 132 DRIKGTGSRLAIGTSLTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLG 191

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNRIITN 226
           M ++ +   +GL+ +N ++TA+D +++     + +PQ     +      + +   +   N
Sbjct: 192 MYSSRFYEPTGLNYQN-VSTAKDLSLMVNAAVQ-YPQIRINSTSNHAAVQTKNGQQNYKN 249

Query: 227 HNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+   M NI+  KTGY R +G ++V     ++ P+  +++  PTS  R   A ++ +
Sbjct: 250 SNALVREGMWNIELQKTGYIREAGRSMVVRANIQNQPVTIILLNSPTSATRVNDARKIES 309

Query: 286 SFLEKKT 292
             L++++
Sbjct: 310 WMLQQRS 316


>gi|240127722|ref|ZP_04740383.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268686110|ref|ZP_06152972.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae SK-93-1035]
 gi|268626394|gb|EEZ58794.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae SK-93-1035]
          Length = 312

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 115/247 (46%), Gaps = 13/247 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++V++    Q+   K  +   P AS++K+M+  ++ +      L +N  + ++    
Sbjct: 72  SQSALVVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDA----NLDMNETVTITPDEI 127

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   +   L   T  T ++ +   +  S N  + A G    G    F   M+ KA+ +G
Sbjct: 128 DRLKGTGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLG 187

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNRIITN 226
           M  + +   +GL+ +N ++TA+D +++     + +PQ     +      + +   +   N
Sbjct: 188 MYGSRFYEPTGLNFQN-VSTAKDLSLMVNAAAQ-YPQIRTNSTSNYASVQTKNGQQNYKN 245

Query: 227 HNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+   M NI+  KTGY R +G ++V     ++ P+  V++  PTS  R   A ++ +
Sbjct: 246 SNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIES 305

Query: 286 SFLEKKT 292
             L++++
Sbjct: 306 WMLQQRS 312


>gi|322389162|ref|ZP_08062723.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis ATCC 903]
 gi|321144067|gb|EFX39484.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis ATCC 903]
          Length = 452

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 130/295 (44%), Gaps = 42/295 (14%)

Query: 27  NIQLMGKILFLSII-----MISMASELHAKP-------KYSSIVIDVNKNQMTGFKQ-DE 73
           +I L+  +L   I+     ++ MA +++           +SS++ID N   +      DE
Sbjct: 8   HICLLLSLLCQPILASADELVDMAQKMYPNDNVQAINRPHSSLIIDGNTGNVLWKDNIDE 67

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQI--PVSKTAATQ--NPSKLYLKEKTYFTTE 129
            R PAS++K+MTLY++FE + + K+  +T I    S  A  +    S   +     +T  
Sbjct: 68  VRDPASMSKLMTLYLLFEDMANGKISKDTVIKATASDQAIGKIYEISNNNIVAGVDYTIP 127

Query: 130 QGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGLH----- 183
           + I   +  S+N  +      +S ++   F   M+ KAK++GM NT++ N SG       
Sbjct: 128 ELITMTVVPSSNVSTLMLANLMSNNDPDAFIERMNAKAKELGMTNTVWNNPSGAAISTLQ 187

Query: 184 ----------DKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHN 228
                     D    TTARD  IL       +P    Y      +++K          +N
Sbjct: 188 GYYQVNNYPNDAANQTTARDLGILVYHFINQYPDILNYTNQAQVTVKKGTPYEETFDTYN 247

Query: 229 KLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
             L      +  +DG+KTG +    FN + +++  +  ++AV+MG+    ++D +
Sbjct: 248 YSLPGAKYALKGVDGLKTGSSPRGAFNYIATIKRGNQRLIAVIMGVGDWADQDGE 302


>gi|332359192|gb|EGJ37013.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK49]
          Length = 409

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/330 (19%), Positives = 131/330 (39%), Gaps = 42/330 (12%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +A++       S++ +D    ++   K    P    S+T ++T+Y+++E +    L  +T
Sbjct: 6   VAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLLTVYLVYEAIDRGDLTADT 65

Query: 103 QIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            + +S  A    A  N S + L+ K  +  +  I A +  S+N  + A  E + GSE+ F
Sbjct: 66  YVDISDYAYNLTANPNISNVPLEAK-RYKVKDLIAASLMSSSNSATIALAEKLGGSEENF 124

Query: 159 AILMSNKAKKIGMQNTIYKNASGLH------------------------DKNQITTARDQ 194
             +M  K K+ G+ +    N++GL+                        D     +A D 
Sbjct: 125 VQMMKAKLKEWGITDATIVNSTGLNTLLLEYATEETEYSASASTTKKSKDTENKFSAYDL 184

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL----NKMHNIDGIKTGYTRNSGF 250
           A++   L  +FPQ     S    +     + N+N +L    N    +DG+K G +   G 
Sbjct: 185 AVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGSSDKGGS 244

Query: 251 NIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELIT----SFLEKKTLKHQQTHRKD 302
           + V +       ++ VV+ +         R      L+     +F +   +   + + K 
Sbjct: 245 SFVATTTENGIRMITVVLDVEQTDGDPYARFVATASLMNYVSQNFTQTTIVAEGEAYNKS 304

Query: 303 NLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
             +    K+  +     + ++  ++I  +A
Sbjct: 305 KSTVIDGKQKTVPAVASKDFTIIERIANQA 334


>gi|329935730|ref|ZP_08285535.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           griseoaurantiacus M045]
 gi|329304821|gb|EGG48694.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           griseoaurantiacus M045]
          Length = 281

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/276 (20%), Positives = 106/276 (38%), Gaps = 25/276 (9%)

Query: 35  LFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIF 90
           +  +  + +  ++   KP  ++    V++    +    K+ + R    S TK+MT  ++ 
Sbjct: 7   VLATGALTAAPAQAVTKPSITAKGGFVMNSGTGKSLYTKKADTRLSTGSTTKIMTAKVVL 66

Query: 91  EYLQSKKLHLNTQIPV----SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
                  L+LN+++ +    S      N S  +L      T  Q +  L+  S  D + A
Sbjct: 67  ---SQSNLNLNSKVTIQKAYSDYIVRNNASSAHLIVGDKVTVRQLLYGLMLPSGCDAAYA 123

Query: 147 FGEFISGS------EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
             +            K F   M+  A+ +G+ NT + +  G+ + +  +T RD   L   
Sbjct: 124 LADKFGSGSSRSARVKSFLSKMNKTARDLGLTNTHFDSFDGIGNGSNYSTPRDLTKLARN 183

Query: 201 LRKN--FPQYYKY------FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
             KN  F    K        + +   YR    +N N LL+      G+KTG    + + +
Sbjct: 184 ALKNSTFRTVVKTKSTKQKVTTKSGGYRYMNWSNTNPLLSGYSGTIGVKTGSGPEAKYCL 243

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           V +       +V  V+   +   R   A +L+T   
Sbjct: 244 VFAATRNGKTVVGTVLASSSVANRTSDAKKLLTYGF 279


>gi|153814890|ref|ZP_01967558.1| hypothetical protein RUMTOR_01105 [Ruminococcus torques ATCC 27756]
 gi|331089590|ref|ZP_08338489.1| hypothetical protein HMPREF1025_02072 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847921|gb|EDK24839.1| hypothetical protein RUMTOR_01105 [Ruminococcus torques ATCC 27756]
 gi|330404958|gb|EGG84496.1| hypothetical protein HMPREF1025_02072 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 350

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 107/248 (43%), Gaps = 26/248 (10%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT--QNPSKL 118
            +     G+K  +  YPAS TK+MT Y+  +Y      +L+  + +S T+     + S  
Sbjct: 110 ADSQIKYGYKLFDKLYPASTTKVMTAYLALKYG-----NLDDVVTMSATSTNFNWDESTC 164

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            L      T    I  L+ +S ND + A  E ISGS++ FA LM+ +AK++G   T + N
Sbjct: 165 GLSAGDSLTLYDLICGLLLQSGNDCAAAIAEHISGSQEAFAELMNTEAKQLGATGTHFVN 224

Query: 179 ASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NRIITNHNKLLNK 233
             GLHD+N  TT  D  ++     K+   +    S+  +  +         T   +  N 
Sbjct: 225 PHGLHDENHYTTTYDLYLMFNEALKD-QAFLDIISMNSYTAKVTSADGTSYTPTWQATNY 283

Query: 234 MH----------NIDGIKTGYTRNSGFNIVTSLRYK--DDPIVAVVMGMPTSQERDQKAL 281
                       ++ G KTG T  +G   V         +P ++V+MG        ++  
Sbjct: 284 YSAGEATPPDGIHVYGGKTGTTDQAGNC-VILYEKNTAGEPYISVIMGASDKPLLYEEMN 342

Query: 282 ELITSFLE 289
           EL+ + ++
Sbjct: 343 ELLDAGMK 350


>gi|302874416|ref|YP_003843049.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           cellulovorans 743B]
 gi|307690978|ref|ZP_07633424.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           cellulovorans 743B]
 gi|302577273|gb|ADL51285.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           cellulovorans 743B]
          Length = 454

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 72/324 (22%), Positives = 134/324 (41%), Gaps = 35/324 (10%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYS--SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           LM   + LS    + A  +         +I +D +  ++   K  D   YPAS+TK+MT 
Sbjct: 9   LMASTMLLSFSKTTFAEPIPEPQIVGKYAITVDASTGEVIYAKDPDARVYPASVTKVMTA 68

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-----YLKEKTYFTTEQGILALITRSAN 141
            ++      K   ++  +  ++TA  Q+PS +      +           + A++  SAN
Sbjct: 69  ILV-----EKLFKIDDMVTYTQTAKIQDPSSINMDIVDIPIGQQIPVSAALKAMMLYSAN 123

Query: 142 DVSTAFGEFI----SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK--NQITTARDQA 195
           D++           S S K+F  LM+++AK +GM +T +   +GL D     +TTA D +
Sbjct: 124 DMTELVATNYPTKGSDSNKEFVALMNSEAKVLGMNSTNFVTTNGLDDNTNEHLTTAYDLS 183

Query: 196 ILGILLRK--NFPQYYKYFSIRKFRYRNRI---ITNHNKLLNK-----MHNIDGIKTGYT 245
           I+     K  N    ++  +     +       + N NK L +       +  G+K+G+T
Sbjct: 184 IMAREAAKYPNIRAVWQLPNPTNIDFPGLTSVQVGNPNKFLQQGTDFYDPSCVGVKSGFT 243

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTS---QERDQKALELIT-SFLEKKTLKHQQTHRK 301
             +G  +++        IV +V+   TS   Q        +I  S+  +++L    T   
Sbjct: 244 DKAGRCLLSVFERNGRQIVGIVLNCETSYLNQTIYTDMKNIINYSYQAQRSL--LTTTEP 301

Query: 302 DNLSSTSLKKSLMIKKLKRTYSQF 325
                TS  K  ++  +   Y ++
Sbjct: 302 ATGKVTSYSKDSLLTTIPVEYKEY 325


>gi|261400432|ref|ZP_05986557.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           lactamica ATCC 23970]
 gi|269209880|gb|EEZ76335.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           lactamica ATCC 23970]
          Length = 312

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 111/247 (44%), Gaps = 13/247 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++V++    Q+   K  +   P AS++K+M+  ++ +      L+++  I ++    
Sbjct: 72  SQSALVVNNQTGQILYQKNADRIMPIASISKLMSAMVVLDA----DLNMDETITITPDEI 127

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   +   L   T  T  + +   +  S N  + A G    G    F   M+ KA+ +G
Sbjct: 128 DRLKGTGSRLAIGTSLTRRELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNQKAQSLG 187

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY----KYFSIRKFRYRNRIITN 226
           M  + +   +GL+  N ++TA+D  ++     + +P         ++  + +   +   N
Sbjct: 188 MYGSRFYEPTGLNFHN-VSTAKDLNLMVNAAVR-YPLIRANSTSNYASVQTKNGQQNYKN 245

Query: 227 HNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+ +    I+  KTGY R +G ++V     ++ P+  V++  PTS  R   A ++ +
Sbjct: 246 SNALIREGRWRIELQKTGYIREAGRSMVVRANIQNQPVTIVLLNSPTSATRVNDARKIES 305

Query: 286 SFLEKKT 292
             L++ +
Sbjct: 306 WMLQQHS 312


>gi|307729203|ref|YP_003906427.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. CCGE1003]
 gi|307583738|gb|ADN57136.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. CCGE1003]
          Length = 393

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 99/240 (41%), Gaps = 17/240 (7%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + V+D N  +    K      P AS+TK+MT  ++ +     K  +  Q+ V+       
Sbjct: 142 AYVVDQNTGEPLFDKNSRAVVPIASITKLMTAMVVLDS----KEPMTDQLEVTDEDRDYE 197

Query: 115 ---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S+  L   +  + E  +   +  S N  + A   +  G    F   M+ KA+++GM
Sbjct: 198 KNTGSR--LSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFLAAMNAKARQLGM 255

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNH 227
            +T ++N +GL  +N +++ARD   +     + +P   ++ +   +      R     + 
Sbjct: 256 TDTHFENPTGLTSQN-VSSARDLVKMVNAAYQ-YPLIRRFSTDHSYEVYTGKRTLAYNST 313

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           N L+ N   +I   KTG+   +G  +V        P+V V++       R   A  L T 
Sbjct: 314 NALVRNPTWDIGLQKTGFINEAGECLVMQANIHGRPMVLVLLDSSGKYSRFADATRLRTW 373


>gi|91788192|ref|YP_549144.1| murein-DD-endopeptidase [Polaromonas sp. JS666]
 gi|91697417|gb|ABE44246.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Polaromonas sp. JS666]
          Length = 353

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 99/234 (42%), Gaps = 13/234 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++VID +  ++   K D    P ASLTK+MT  I    +   KL ++  I V++      
Sbjct: 100 ALVIDQDTREVLFSKNDHAVLPIASLTKLMTGVI----ISGAKLPMDEMITVTQDDVDTE 155

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   L+  T  T  + +   +  S N  + A G    G    F  LM+ KAK +GM +
Sbjct: 156 KGSSSRLRVGTTLTRGELLHLALMSSENRAAHALGRTYPGGMPTFVNLMNAKAKMLGMND 215

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T Y   +GL  +NQ ++A+D A L      + P   +  +   ++     R     N N+
Sbjct: 216 TSYVEPTGLSSRNQ-SSAQDLATLVNAAHGD-PVLRELSTSTGYQVAVGKRTLQYNNTNR 273

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           L+ N   +I   KTGY   +G  +V   +     ++ V +       R   A  
Sbjct: 274 LVKNPDWDIGLQKTGYISEAGQCLVMQTKIAGRKLIMVFLDSAGKLSRLGDAER 327


>gi|260221036|emb|CBA29200.1| D-alanyl-D-alanine endopeptidase [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 310

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 11/237 (4%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + V+D +  ++   K +    P AS+TK+MT  ++ E     +L ++  I +++      
Sbjct: 52  AFVVDQDTKEVLFSKNENAVLPIASITKLMTGVVVSEA----RLSMDETIEITQADVDTE 107

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   L+  T  +  + +   +  S N  + A G    G  + F  LM+ KA+ +GM +
Sbjct: 108 KGSSSRLRVGTELSRGELLHLALMASENRAAHALGRTFPGGLQHFVGLMNQKARILGMTD 167

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFP-QYYKYFSIRKFRYRNRII--TNHNKL 230
           T Y   +GL+ +NQ ++A+D A L      +   +     +  +    NR +   N N+L
Sbjct: 168 TQYVEPTGLNSRNQ-SSAKDLATLVNYAYSDATLRELSTSTGYQVEVGNRTLQYNNTNRL 226

Query: 231 L-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           + N    I   KTGY   +G  +V   +     ++ V +       R   A  +   
Sbjct: 227 VKNPAWEIGLQKTGYITEAGQCLVMQAKIAGRKLIMVFLDSAGKLTRIADAERVRKW 283


>gi|288934371|ref|YP_003438430.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Klebsiella
           variicola At-22]
 gi|288889100|gb|ADC57418.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Klebsiella
           variicola At-22]
          Length = 316

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 103/259 (39%), Gaps = 15/259 (5%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQS 95
           L+    ++A+        S++++D+   ++    Q +  R  AS+TK+MT  ++ +    
Sbjct: 25  LAKTSAAVAASQPDIASGSAMIVDLATKKIIYASQPDLVRPMASITKVMTAMVVLDAH-- 82

Query: 96  KKLHLNTQIPVS-KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
             L ++  + V              ++  +  +    +L  +  S N  + +      G 
Sbjct: 83  --LPMDEMLTVDISHTPEMKGIYSRVRLNSQISRRTMLLLALMSSENRAAASLAHHYPGG 140

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
              F   M+ KA+ +GM +T Y   +GL   N ++TARD   L ++  + +P   +  + 
Sbjct: 141 YDAFIRAMNAKAQALGMTHTRYVEPTGLSVHN-VSTARDLTKL-LIASEQYPLIGQLSTT 198

Query: 215 RKFRYR------NRIITNHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           ++          +    N N L+ +   NI   KTG+T  +G  ++        P+  VV
Sbjct: 199 KEETATFAHPAYSLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLIMRTVINQHPVALVV 258

Query: 268 MGMPTSQERDQKALELITS 286
           M           A  L T 
Sbjct: 259 MDAFGKYTHFADASRLRTW 277


>gi|296876825|ref|ZP_06900873.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432327|gb|EFH18126.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis ATCC 15912]
          Length = 449

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 130/295 (44%), Gaps = 42/295 (14%)

Query: 27  NIQLMGKILFLSII-----MISMASELHAKP-------KYSSIVIDVNKNQMTGFKQ-DE 73
           +I L+  +L   I+     ++ MA +++           +SS++ID N   +      DE
Sbjct: 8   HICLLLSLLCQPILASADELVDMAQKMYPNDNVQAINRPHSSLIIDGNTGNVLWKDNIDE 67

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQI--PVSKTAATQ--NPSKLYLKEKTYFTTE 129
            R PAS++K+MTLY++FE + + K+  +T I    S  A  +    S   +     +T  
Sbjct: 68  VRDPASMSKLMTLYLLFEDMANGKISKDTVIKATASDQAIGKIYEISNNNIVAGVDYTIP 127

Query: 130 QGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGLH----- 183
           + I   +  S+N  +      +S ++   F   M+ KAK++GM NT++ N SG       
Sbjct: 128 ELITMTVVPSSNVSTLMLANLMSNNDPDAFIERMNAKAKELGMTNTVWNNPSGAAISTLQ 187

Query: 184 ----------DKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHN 228
                     D    TTARD  IL       +P    Y      +++K          +N
Sbjct: 188 GYYQVNNYPNDAANQTTARDLGILVYHFINQYPDILNYTNQAQVTVKKGTPYEETFDTYN 247

Query: 229 KLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
             L      +  +DG+KTG +    FN + +++  +  ++AV+MG+    ++D +
Sbjct: 248 YSLPGAKYALKGVDGLKTGSSPRGAFNYIATIKRGNQRLIAVIMGVGDWADQDGE 302


>gi|145300681|ref|YP_001143522.1| D-alanyl-D-alanine carboxypeptidase; penicillin binding protein 7
           [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853453|gb|ABO91774.1| D-alanyl-D-alanine carboxypeptidase; penicillin binding protein 7
           [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 275

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 109/246 (44%), Gaps = 22/246 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           S++V+DVN  +    K     R  ASLTK+MT  ++ E     +  LN  + + +     
Sbjct: 38  SALVVDVNTGKTLYQKNATRVRPIASLTKLMTALVVLE----GRQSLNQTLSIDQNDRDN 93

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S+  ++  T  T    +   +  S N +++A      G  + F   M+NKA+++G
Sbjct: 94  VKHTYSR--IRFGTKVTRRDALHLTLMSSENRMASALARHYPGGRQAFIRAMNNKARQLG 151

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF--SIRKFRYRN----RII 224
           M+N+ + +++GL  +N ++TA+D A L     +  P   ++   + R  R+       + 
Sbjct: 152 MRNSRFHDSTGLSTRN-VSTAQDLAKLISAAYRQ-PLIRQFTQDTNRDMRFNTPAYRLMF 209

Query: 225 TNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM---GMPTSQERDQKA 280
            N N L+ N    +   KTG+T  +G  +V   +     +  V++   G  T      + 
Sbjct: 210 NNTNPLVKNPDWGVRLSKTGFTDEAGRCLVMRAKPDSRELAIVLLNSVGKRTPIGDANRI 269

Query: 281 LELITS 286
            + + S
Sbjct: 270 RKWLKS 275


>gi|316983735|gb|EFV62716.1| D-alanyl-D-alanine endopeptidase [Neisseria meningitidis H44/76]
 gi|325197971|gb|ADY93427.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           meningitidis G2136]
          Length = 312

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 115/247 (46%), Gaps = 13/247 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++V++    Q+   K  +   P AS++K+M+  ++ +      L +N  + ++    
Sbjct: 72  SQSALVVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDA----NLDMNETVTITPDEI 127

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   +   L   T  T ++ +   +  S N  + A G    G    F   M+ KA+ +G
Sbjct: 128 DRLKGTGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLG 187

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNRIITN 226
           M  + +   +GL+ +N ++TA+D +++     + +PQ     +      + +   +   N
Sbjct: 188 MYGSRFYEPTGLNFQN-VSTAKDLSLMVNAAAQ-YPQIRTNSTSNYASVQTKNGQQNYKN 245

Query: 227 HNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+   M NI+  KTGY R +G ++V     ++ P+  V++  PTS  R   A ++ +
Sbjct: 246 SNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIES 305

Query: 286 SFLEKKT 292
             L++++
Sbjct: 306 WMLQQRS 312


>gi|289770578|ref|ZP_06529956.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
 gi|289700777|gb|EFD68206.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
          Length = 260

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/263 (21%), Positives = 102/263 (38%), Gaps = 28/263 (10%)

Query: 52  PKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV- 106
           P  ++    V++    +    K  D  R   S TK+MT  ++       KL+L+ ++ + 
Sbjct: 2   PSIAARGGFVMNNATGRSLYTKAADTRRSTGSTTKIMTAKVVL---SQPKLNLDAKVTIQ 58

Query: 107 ---SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS------EKK 157
              S    ++N S   L      T  Q +  L+  S  D + A  +            K 
Sbjct: 59  MAYSDYIVSKNASSARLIVGDKVTVRQLLYGLMLPSGCDAAYALADKFGSGRTRAARVKS 118

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   M+  AK +G++NT + +  G+ +    +T RD   +     KN   +      +K+
Sbjct: 119 FIGKMNATAKSLGLKNTHFDSFDGIGNGKNYSTPRDLTKIASSAMKNS-TFRTIVKTKKY 177

Query: 218 RYRNRI----------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
             + R            TN N LL       G+KTG    + + +V +   K   ++  V
Sbjct: 178 TAKTRTKKGGTRTMAPWTNTNTLLGSYSGAIGVKTGSGPEAKYCLVFAATRKGKTVIGTV 237

Query: 268 MGMPTSQERDQKALELITSFLEK 290
           +   +S +R + A +L+     K
Sbjct: 238 LASSSSAQRAKDATKLMNYAFTK 260


>gi|261392880|emb|CAX50461.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase;
           DD-peptidase; DD-carboxypeptidase) [Neisseria
           meningitidis 8013]
 gi|325203838|gb|ADY99291.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           meningitidis M01-240355]
          Length = 312

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 116/247 (46%), Gaps = 13/247 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++V++    Q+   K  +   P AS++K+M+  ++ +      L +N  + ++    
Sbjct: 72  SQSALVVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDA----NLDMNETVTITPDEI 127

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   +   L   T  T ++ +   +  S N  + A G    G    F   M+ KA+ +G
Sbjct: 128 DRLKGTGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLG 187

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNRIITN 226
           M ++ +   +GL+ +N ++TA+D +++     + +PQ     +      + +   +   N
Sbjct: 188 MYSSRFYEPTGLNFQN-VSTAKDLSLMVNAAAQ-YPQIRTNSTSNYASVQTKNGQQNYKN 245

Query: 227 HNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+   M NI+  KTGY R +G ++V     ++ P+  V++  PTS  R   A ++ +
Sbjct: 246 SNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIES 305

Query: 286 SFLEKKT 292
             L++++
Sbjct: 306 WMLQQRS 312


>gi|167563365|ref|ZP_02356281.1| family S11 unassigned peptidase [Burkholderia oklahomensis EO147]
          Length = 278

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 100/238 (42%), Gaps = 13/238 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + V+D N ++    K      P AS+TK+MT  ++ +     K  L  QI V+       
Sbjct: 28  AYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVVDS----KAPLTDQIEVTDEDRDYE 83

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +   L   +  + E  +   +  S N  + A   +  G    F   M+ KAK +GM +
Sbjct: 84  KGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYFPGGRPAFIAAMNAKAKALGMTD 143

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF--RYRNRII--TNHNK 229
           T ++N++GL  +N +++ARD   +     + +P   K+ + R +      R +   + N 
Sbjct: 144 THFENSTGLSSQN-VSSARDLVKMVNAAYQ-YPLIRKFSTDRSYEVDTGKRTLAYNSTNA 201

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L+ N   +I   KTG+   +G  +V        PIV V++       R   A  +   
Sbjct: 202 LVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRPIVMVLLDSFGKYSRFADASRVRNW 259


>gi|218767872|ref|YP_002342384.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria meningitidis
           Z2491]
 gi|121051880|emb|CAM08186.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria meningitidis
           Z2491]
 gi|308388939|gb|ADO31259.1| putative D-alanyl-D-alanine-endopeptidase; penicillin-binding
           protein 4 [Neisseria meningitidis alpha710]
 gi|325127864|gb|EGC50770.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           meningitidis N1568]
 gi|325131795|gb|EGC54495.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           meningitidis M6190]
 gi|325133735|gb|EGC56391.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           meningitidis M13399]
 gi|325136025|gb|EGC58635.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           meningitidis M0579]
 gi|325137845|gb|EGC60420.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           meningitidis ES14902]
 gi|325144211|gb|EGC66518.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           meningitidis M01-240013]
 gi|325202452|gb|ADY97906.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           meningitidis M01-240149]
 gi|325206406|gb|ADZ01859.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           meningitidis M04-240196]
 gi|325207796|gb|ADZ03248.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           meningitidis NZ-05/33]
          Length = 312

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 115/247 (46%), Gaps = 13/247 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++V++    Q+   K  +   P AS++K+M+  ++ +      L +N  + ++    
Sbjct: 72  SQSALVVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDA----NLDMNETVTITPDEI 127

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   +   L   T  T ++ +   +  S N  + A G    G    F   M+ KA+ +G
Sbjct: 128 DRIKGTGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLG 187

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNRIITN 226
           M  + +   +GL+ +N ++TA+D +++     + +PQ     +      + +   +   N
Sbjct: 188 MYGSRFYEPTGLNFQN-VSTAKDLSLMVNAAAQ-YPQIRTNSTSNYASVQTKNGQQNYKN 245

Query: 227 HNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+   M NI+  KTGY R +G ++V     ++ P+  V++  PTS  R   A ++ +
Sbjct: 246 SNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIES 305

Query: 286 SFLEKKT 292
             L++++
Sbjct: 306 WMLQQRS 312


>gi|59800773|ref|YP_207485.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae FA
           1090]
 gi|194098057|ref|YP_002001105.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998517|ref|ZP_04718441.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           35/02]
 gi|240013642|ref|ZP_04720555.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           DGI18]
 gi|240016081|ref|ZP_04722621.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           FA6140]
 gi|240080223|ref|ZP_04724766.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           FA19]
 gi|240112436|ref|ZP_04726926.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           MS11]
 gi|240115176|ref|ZP_04729238.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           PID18]
 gi|240117460|ref|ZP_04731522.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           PID1]
 gi|240120712|ref|ZP_04733674.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           PID24-1]
 gi|240123016|ref|ZP_04735972.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           PID332]
 gi|240125268|ref|ZP_04738154.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           SK-92-679]
 gi|254493238|ref|ZP_05106409.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae 1291]
 gi|260441006|ref|ZP_05794822.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           DGI2]
 gi|268594377|ref|ZP_06128544.1| penicillin-binding protein 4 [Neisseria gonorrhoeae 35/02]
 gi|268596373|ref|ZP_06130540.1| penicillin-binding protein 4 [Neisseria gonorrhoeae FA19]
 gi|268598501|ref|ZP_06132668.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae MS11]
 gi|268600854|ref|ZP_06135021.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae PID18]
 gi|268603159|ref|ZP_06137326.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae PID1]
 gi|268681640|ref|ZP_06148502.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae PID332]
 gi|268683868|ref|ZP_06150730.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae SK-92-679]
 gi|291044337|ref|ZP_06570046.1| penicillin-binding protein 4 [Neisseria gonorrhoeae DGI2]
 gi|293399525|ref|ZP_06643678.1| D-alanyl-D-alanine endopeptidase (penicillin binding protein 7)
           [Neisseria gonorrhoeae F62]
 gi|59717668|gb|AAW89073.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae FA
           1090]
 gi|193933347|gb|ACF29171.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226512278|gb|EEH61623.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae 1291]
 gi|268547766|gb|EEZ43184.1| penicillin-binding protein 4 [Neisseria gonorrhoeae 35/02]
 gi|268550161|gb|EEZ45180.1| penicillin-binding protein 4 [Neisseria gonorrhoeae FA19]
 gi|268582632|gb|EEZ47308.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae MS11]
 gi|268584985|gb|EEZ49661.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae PID18]
 gi|268587290|gb|EEZ51966.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae PID1]
 gi|268621924|gb|EEZ54324.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae PID332]
 gi|268624152|gb|EEZ56552.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae SK-92-679]
 gi|291011231|gb|EFE03227.1| penicillin-binding protein 4 [Neisseria gonorrhoeae DGI2]
 gi|291610094|gb|EFF39216.1| D-alanyl-D-alanine endopeptidase (penicillin binding protein 7)
           [Neisseria gonorrhoeae F62]
 gi|317163793|gb|ADV07334.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 312

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 115/247 (46%), Gaps = 13/247 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++V++    Q+   K  +   P AS++K+M+  ++ +      L +N  + ++    
Sbjct: 72  SQSALVVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDA----NLDMNETVTITPDEI 127

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   +   L   T  T ++ +   +  S N  + A G    G    F   M+ KA+ +G
Sbjct: 128 DRLKGTGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLG 187

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNRIITN 226
           M  + +   +GL+ +N ++TA+D +++     + +PQ     +      + +   +   N
Sbjct: 188 MYGSRFYEPTGLNFQN-VSTAKDLSLMVNAAAQ-YPQIRTNSTSNYASVQTKNGQQNYKN 245

Query: 227 HNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+   M NI+  KTGY R +G ++V     ++ P+  V++  PTS  R   A ++ +
Sbjct: 246 SNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIES 305

Query: 286 SFLEKKT 292
             L++++
Sbjct: 306 WMLQQRS 312


>gi|170721278|ref|YP_001748966.1| D-alanyl-D-alanine endopeptidase [Pseudomonas putida W619]
 gi|169759281|gb|ACA72597.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pseudomonas
           putida W619]
          Length = 296

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 111/249 (44%), Gaps = 16/249 (6%)

Query: 55  SSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAAT 112
           S+++ID+N N+       D     AS+TK+MT  ++ +     KL ++  + ++      
Sbjct: 33  SALLIDLNTNKELYSSHADRVVPIASVTKLMTAMVVLDA----KLPMDEMLTMTIANNPD 88

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  ++  +     + +L  +  S N  +T+      G    F   M+ KA+ +GM 
Sbjct: 89  MKGVYSRVRLGSQLNRRETLLITLMSSENRAATSLANHYPGGYPAFIKAMNAKARSLGMA 148

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRII--TN 226
           +T Y   +GL  +N +++ARD A L +  RK +P   +  + R+    FR  N  +   N
Sbjct: 149 HTRYVEPTGLSTQN-VSSARDLAKLLMASRK-YPMLSELSTTREKTVAFRKPNYTLGFRN 206

Query: 227 HNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            + L+NK   +I   KTG+T  +G  +V   R  + P+  V++           A   + 
Sbjct: 207 TDHLVNKSNWDIKLTKTGFTNEAGHCLVLLTRMDNRPVAMVILDAFGKYTHFADASR-MR 265

Query: 286 SFLEKKTLK 294
            +LE  T K
Sbjct: 266 QWLETGTAK 274


>gi|313668773|ref|YP_004049057.1| D-alanyl-D-alanine-endopeptidase [Neisseria lactamica ST-640]
 gi|309378137|emb|CBX23227.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313006235|emb|CBN87697.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria lactamica
           020-06]
          Length = 312

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 111/247 (44%), Gaps = 13/247 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++V++    Q+   K  +   P AS++K+M+  ++ +      L+++  I ++    
Sbjct: 72  SQSALVVNNQTGQILYQKNADRIMPIASISKLMSAMVVLDA----DLNMDETITITPDEI 127

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   +   L   T  T  + +   +  S N  + A G    G    F   M+ KA+ +G
Sbjct: 128 DRLKGTGSRLAIGTSLTRRELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNQKAQSLG 187

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY----KYFSIRKFRYRNRIITN 226
           M  + +   +GL+  N ++TA+D  ++     + +P         ++  + +   +   N
Sbjct: 188 MYGSRFYEPTGLNFHN-VSTAKDLNLMVNAAVR-YPLIRANSTSNYASVQTKNGQQNYKN 245

Query: 227 HNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+ +    I+  KTGY R +G ++V     ++ P+  V++  PTS  R   A ++ +
Sbjct: 246 SNALIREGRWRIELQKTGYIREAGRSMVVRANIQNQPVTIVLLNSPTSATRVNDARKIES 305

Query: 286 SFLEKKT 292
             L++ +
Sbjct: 306 WMLQQHS 312


>gi|323526624|ref|YP_004228777.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. CCGE1001]
 gi|323383626|gb|ADX55717.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. CCGE1001]
          Length = 391

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 100/240 (41%), Gaps = 17/240 (7%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + V+D N  +    K      P AS+TK+MT  ++ +     K  ++ Q+ V+       
Sbjct: 140 AYVVDQNTGEPLFDKNSRAVVPIASITKLMTAMVVLDS----KEPMSDQLEVTDEDRDYE 195

Query: 115 ---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S+  L   +  + E  +   +  S N  + A   +  G    F   M+ KA+++GM
Sbjct: 196 KNTGSR--LSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFLAAMNAKARQLGM 253

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNH 227
            +T ++N +GL  +N +++ARD   +     + +P   K+ +   +      R     + 
Sbjct: 254 TDTHFENPTGLTSQN-VSSARDLVKMVNAAYQ-YPLIRKFSTDHSYEVYTGKRTLAYNST 311

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           N L+ N   +I   KTG+   +G  +V        P+V V++       R   A  L T 
Sbjct: 312 NALVRNPTWDIGLQKTGFINEAGECLVMQANIHGRPMVMVLLDSSGKYSRFADATRLRTW 371


>gi|327488930|gb|EGF20727.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK1058]
          Length = 409

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/330 (19%), Positives = 134/330 (40%), Gaps = 42/330 (12%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +A++       S++ +D    ++   K    P    S+T ++T+Y+++E +    L  +T
Sbjct: 6   VAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLLTVYLVYEAIDRGDLTADT 65

Query: 103 QIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            + +S  A +     N S + L+ K+Y   +  I A +  S+N  + A  E + GSE+ F
Sbjct: 66  YVDISDYAYSLTSNPNISNVPLEAKSY-KVKDLIAASLMSSSNSATIALAEKVGGSEENF 124

Query: 159 AILMSNKAKKIGMQNTIYKNASGLH------------------------DKNQITTARDQ 194
             +M  K K+ G+++    N++GL+                        D     +A D 
Sbjct: 125 VQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYSASASTFKKSKDTENKFSAYDL 184

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL----NKMHNIDGIKTGYTRNSGF 250
           A++   L  +FPQ  +  S    +     + N+N +L    N    +DG+K G +   G 
Sbjct: 185 AVISRHLIMDFPQVTEITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGSSDKGGS 244

Query: 251 NIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELIT----SFLEKKTLKHQQTHRKD 302
           + V +       ++ VV+ +         R      L+     +F +   +   + + K 
Sbjct: 245 SFVATTTENGIRMITVVLDVDQTDGDPYARFVATASLMNYVSQNFTQTTIVAEGEAYNKS 304

Query: 303 NLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
             +    K+  +     + ++  ++I  +A
Sbjct: 305 KSTVIDGKQKTVPAVASKDFTIIERIANQA 334


>gi|332974550|gb|EGK11470.1| D-alanyl-D-alanine endopeptidase PbpG [Kingella kingae ATCC 23330]
          Length = 313

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/239 (23%), Positives = 105/239 (43%), Gaps = 14/239 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+++++ N  Q+   K  D  R  AS++K+M   ++ +     +L +N +I +++   
Sbjct: 72  AQSALIMNANTGQIFYQKNMDNVRSIASISKLMAAMVVLDA----RLDMNQRITITEAEI 127

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   +   L   T  T  Q +   +  S N    A G    G    F   M+ KA+ +G
Sbjct: 128 DRLKGTGSRLSIGTTLTRGQMLHLGLMSSENRAIHALGRTYPGGMSAFVQAMNAKARSLG 187

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----IT 225
           M N+ +   +GL D   ++TAR+ +++     + +PQ  +  + +               
Sbjct: 188 MMNSRFYEPTGL-DPRNVSTARELSMMVRAASQ-YPQIRQLSTAQSGEAYTSTGKFEQYK 245

Query: 226 NHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           N N  +     NI   KTGY R +G ++V   +   +P++ VV+G  T+  R   A  L
Sbjct: 246 NSNIFVREGNWNITVQKTGYIREAGRSMVMQTQMGREPVIIVVLGSQTTTTRANDARAL 304


>gi|298369173|ref|ZP_06980491.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298283176|gb|EFI24663.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 311

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 119/271 (43%), Gaps = 21/271 (7%)

Query: 37  LSIIMISMASELHAKP--------KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLY 87
           L ++ IS A ++ A+           S+++++    ++   K      P AS++K+M+  
Sbjct: 47  LEVLAISKAEQVEAQAMMAGPLLSSQSALIMNNKTGEVLYQKNANRVMPIASISKLMSAI 106

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           ++ +      L++N  + ++     +   +   L   T    ++ +   +  S N  + A
Sbjct: 107 VLLDA----DLNMNELVTITPEEIDRLKGTGSRLSIGTSLPRKELLHLSLMSSENRATHA 162

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
                 G    F   M+ KA+ +GM N+ +   +GL  +N ++TA D + L     K +P
Sbjct: 163 LARTYPGGINAFVAAMNAKAQSLGMSNSRFYEPTGLDYRN-VSTAHDLSRLVAAASK-YP 220

Query: 207 QYYKYFSIR----KFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
              +  +           ++   N N L+     NI+  KTGY R +G ++V     ++ 
Sbjct: 221 LIRRNSTSNYGAVSTASGSQRYKNSNALVREGGWNIELQKTGYIREAGRSMVVKANVQNQ 280

Query: 262 PIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           PI  V++  P+S  R   A ++ +  L++++
Sbjct: 281 PITIVLLNSPSSTTRVNDARKIESWMLQRRS 311


>gi|153813196|ref|ZP_01965864.1| hypothetical protein RUMOBE_03612 [Ruminococcus obeum ATCC 29174]
 gi|149830727|gb|EDM85818.1| hypothetical protein RUMOBE_03612 [Ruminococcus obeum ATCC 29174]
          Length = 417

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/257 (24%), Positives = 113/257 (43%), Gaps = 23/257 (8%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++++++ +       K  D+  YP +  K+MT  +  E  Q     L+ Q+ ++ T  
Sbjct: 55  STAAMIMEDSTQTTVYAKNMDQVLYPGATVKVMTTLLTLENAQ-----LSDQVTMTATGV 109

Query: 112 T---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
           +      + +  +    FT EQ + A++  SANDV+    E I GS   F  +M+N+A +
Sbjct: 110 SGVTDGGASISAQLDEVFTVEQCLYAIMLASANDVALQIAEQIGGSVDGFVQMMNNRAVE 169

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-------RN 221
           +G  NT++ N +GL D+NQ TTA D A++      N   +        +           
Sbjct: 170 LGCTNTVFTNPTGLPDENQHTTAHDMALITKAAIDN-ESFRAIAETTSYTIPATNVSGGE 228

Query: 222 RIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           R++TN+  +LN           G + GYT  SG  +V         ++AVV+   +    
Sbjct: 229 RVLTNNFSMLNNTNASYYQYCLGGREGYTEASGSTLVCGAEKNGVSLIAVVLQGASGTT- 287

Query: 277 DQKALELITSFLEKKTL 293
             +A+ L+    +   L
Sbjct: 288 AAEAVSLLNYGFDNFQL 304


>gi|226324960|ref|ZP_03800478.1| hypothetical protein COPCOM_02752 [Coprococcus comes ATCC 27758]
 gi|225206308|gb|EEG88662.1| hypothetical protein COPCOM_02752 [Coprococcus comes ATCC 27758]
          Length = 292

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/253 (25%), Positives = 113/253 (44%), Gaps = 25/253 (9%)

Query: 54  YSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +S+ + D+   ++   +K  E  YPAS TK+MT  +  E       +L+ Q+ +S  A  
Sbjct: 39  HSAALFDLTGERVLYSYKAHERLYPASTTKIMTALLAIE-----NANLDDQVTISGNADA 93

Query: 113 QNPSK----LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            + S       L +   +T    + AL+  S ND +TA  E++ GSE+ F  +M+ +A++
Sbjct: 94  SSFSADAQVCGLAKGEVWTLRDLLGALLLYSGNDAATAIAEYVGGSEEAFVNMMNRRAQE 153

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--------FPQYYKYFSIRKFRYR 220
           +    T + N  GLHD N  TTA D  ++     K+           Y  Y++      +
Sbjct: 154 LMANGTHFMNPHGLHDDNHYTTAYDLYLIFNECIKHEDFVNIIQSEAYTAYYTDVDGNSQ 213

Query: 221 NRIITNHNKL------LNKMHNIDGIKTGYTRNSGFNIVTSLRY-KDDPIVAVVMGMPTS 273
             + T  N        + +   I G KTG T  +G+ ++   +   D+P +++VMG    
Sbjct: 214 EVLFTPTNLYAQGEVDVPENVTIVGGKTGTTDEAGYCLILMEKDSSDNPYISIVMGASEK 273

Query: 274 QERDQKALELITS 286
               +    LI +
Sbjct: 274 PVLYEDMTSLIEA 286


>gi|225568832|ref|ZP_03777857.1| hypothetical protein CLOHYLEM_04911 [Clostridium hylemonae DSM
           15053]
 gi|225162331|gb|EEG74950.1| hypothetical protein CLOHYLEM_04911 [Clostridium hylemonae DSM
           15053]
          Length = 348

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 102/240 (42%), Gaps = 20/240 (8%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKT 109
           S++++D++  +       D+  YPASLTK+MT  +  E  ++    L+  I       + 
Sbjct: 92  SAVLVDLDTGKTIAGNNSDDTIYPASLTKIMTAILAVEKTEN----LDEIITLPYDFFQN 147

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
              +  S    +          +  ++  S  +   AF + I+GSE+ F  LM+ KA+ +
Sbjct: 148 LYAEEASMAGFEPGEAVCLRDLLYGILLPSGAECCLAFADKIAGSEEDFVKLMNKKAEAL 207

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLR--KNFPQYYK--YFSIRKFRYRNRIIT 225
           GM++T + N++GLHD    +T  D A+L        +F + +     S R         T
Sbjct: 208 GMEHTQFCNSTGLHDDEHYSTVEDLALLLKYALGNDDFREAFTASRHSTRPSAQHPGGFT 267

Query: 226 NHNKLLNKMH-------NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
            ++ +   M         I G KTGYT+ +G  + +         + V      + + +Q
Sbjct: 268 FYSTMFENMSSAKVTGGEILGGKTGYTKEAGLCLASLADVNGKEYILVTAKADGNHDTEQ 327


>gi|315186124|gb|EFU19886.1| Serine-type D-Ala-D-Ala carboxypeptidase [Spirochaeta thermophila
           DSM 6578]
          Length = 387

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 106/246 (43%), Gaps = 13/246 (5%)

Query: 58  VIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--- 113
           +++     +   KQ +  +PA SLTK++T Y+  + ++   L  +  +PV    A     
Sbjct: 29  LLEPTTRTVLYEKQADLPHPAASLTKLVTAYLALQAVEDGLLQEDALLPVPSALARIPFP 88

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
            + S   L   T  T  Q +   +  SAND + A    ++     FA  M+     +G  
Sbjct: 89  PDASLAGLAPGTTLTPAQLLSLTLIYSANDAAYALALLLAPDIPAFASRMNRLVHAMGYT 148

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY-YKYFSIRKFRYRNRIITNHNKLL 231
           +  ++  SGL       TAR+ A+        FP    +Y + R      R   N N LL
Sbjct: 149 HLFFEEPSGLS-PRNTITAREIALFAADYLDRFPSAPARYHAPRALTVGGRTYLNRNTLL 207

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG------MPTSQERDQKALELIT 285
            +   ++G+KTGY   SGF+IV   R     ++AV++G          QERD++A  L+ 
Sbjct: 208 GRYPGLEGLKTGYLEESGFHIVAYARRGPTSLIAVLLGIQAPGYWEGMQERDRQAAALLD 267

Query: 286 SFLEKK 291
              +  
Sbjct: 268 YGFDTY 273


>gi|5053120|gb|AAD38860.1|AF156692_1 penicillin-binding protein 4 [Neisseria gonorrhoeae]
          Length = 312

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 115/247 (46%), Gaps = 13/247 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++V++    Q+   K  +   P AS++K+M+  ++ +      L +N  + ++    
Sbjct: 72  SQSALVVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDA----NLDMNETVTITPDEI 127

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   +   L   T  T ++ +   +  S N  + A G    G    F   M+ KA+ +G
Sbjct: 128 DRLKGTGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLG 187

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNRIITN 226
           M  + +   +GL+ +N ++TA+D +++     + +PQ     +      + +   +   N
Sbjct: 188 MYGSRFYEPTGLNFQN-VSTAKDLSLMVNAAAQ-YPQIRTNSTSNYASVQTKNGQQNYKN 245

Query: 227 HNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+   M NI+  KTGY R +G ++V     ++ P+  V++  PTS  R   A ++ +
Sbjct: 246 SNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIES 305

Query: 286 SFLEKKT 292
             L++++
Sbjct: 306 WILQQRS 312


>gi|161869693|ref|YP_001598860.1| D-alanyl-D-alanine-endopeptidase [Neisseria meningitidis 053442]
 gi|161595246|gb|ABX72906.1| D-alanyl-D-alanine-endopeptidase [Neisseria meningitidis 053442]
          Length = 316

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 116/247 (46%), Gaps = 13/247 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++V++    Q+   K  +   P AS++K+M+  ++ +      L +N  + ++    
Sbjct: 76  SQSALVVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDA----NLDMNETVTITPDEI 131

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   +   L   T  T ++ +   +  S N  + A G    G    F   M+ KA+ +G
Sbjct: 132 DRIKGTGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLG 191

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNRIITN 226
           M ++ +   +GL+ +N ++TA+D +++     + +PQ     +      + +   +   N
Sbjct: 192 MYSSRFYEPTGLNFQN-VSTAKDLSLMVNAAAQ-YPQIRTNSTSNYASVQTKNGQQNYKN 249

Query: 227 HNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+   M NI+  KTGY R +G ++V     ++ P+  V++  PTS  R   A ++ +
Sbjct: 250 SNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIES 309

Query: 286 SFLEKKT 292
             L++++
Sbjct: 310 WMLQQRS 316


>gi|21222221|ref|NP_628000.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces coelicolor A3(2)]
 gi|256786685|ref|ZP_05525116.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
 gi|5457246|emb|CAB46934.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           coelicolor A3(2)]
          Length = 314

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 99/260 (38%), Gaps = 25/260 (9%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV---- 106
                 V++    +    K  D  R   S TK+MT  ++       KL+L+ ++ +    
Sbjct: 59  AARGGFVMNNATGRSLYTKAADTRRSTGSTTKIMTAKVVL---SQPKLNLDAKVTIQMAY 115

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS------EKKFAI 160
           S    ++N S   L      T  Q +  L+  S  D + A  +            K F  
Sbjct: 116 SDYIVSKNASSARLIVGDKVTVRQLLYGLMLPSGCDAAYALADKFGSGRTRAARVKSFIG 175

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
            M+  AK +G++NT + +  G+ +    +T RD   +     KN   +      +K+  +
Sbjct: 176 KMNATAKSLGLKNTHFDSFDGIGNGKNYSTPRDLTKIASSAMKNS-TFRTIVKTKKYTAK 234

Query: 221 NRI----------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
            R            TN N LL       G+KTG    + + +V +   K   ++  V+  
Sbjct: 235 TRTKKGGTRTMAPWTNTNTLLGSYSGAIGVKTGSGPEAKYCLVFAATRKGKTVIGTVLAS 294

Query: 271 PTSQERDQKALELITSFLEK 290
            +S +R + A +L+     K
Sbjct: 295 SSSAQRAKDATKLMNYAFTK 314


>gi|294670433|ref|ZP_06735315.1| hypothetical protein NEIELOOT_02152 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307897|gb|EFE49140.1| hypothetical protein NEIELOOT_02152 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 313

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 59/258 (22%), Positives = 112/258 (43%), Gaps = 15/258 (5%)

Query: 45  ASELHAKP---KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHL 100
           A    A P     ++++++    ++   K      P AS++K+M+  ++ +     +L++
Sbjct: 61  AQAAIAGPLLSSQAALIVNNRTGEVLYQKNMNRVMPIASISKLMSAMVVLDA----RLNM 116

Query: 101 NTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           N  I +++    +   +   L   T  T  Q +   +  S N  + A G    G    F 
Sbjct: 117 NEVITITEDEIDRLKGTGSRLSVGTQLTRAQLLHLSLMSSENRATHALGRTYPGGMSAFV 176

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP----QYYKYFSIR 215
             M+ KA+ +GM N+ +   +GL  +N ++TA D   L        P        Y S+ 
Sbjct: 177 AAMNAKAQSLGMTNSRFYEPTGLDYRN-VSTAWDLNKLAAAASNYAPITKNSTATYGSVY 235

Query: 216 KFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
               R +   N N L+     +I+  KTGY R SG ++V   R   +P+  V++  PTS 
Sbjct: 236 TSAGRQQNYKNTNALVREGTWDIELQKTGYIRESGRSMVVRARIGREPVTIVLLNSPTST 295

Query: 275 ERDQKALELITSFLEKKT 292
            R   A ++ +  +++ +
Sbjct: 296 TRVNDARKIQSWMMQRPS 313


>gi|50121716|ref|YP_050883.1| D-alanyl-D-alanine endopeptidase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612242|emb|CAG75692.1| penicillin-binding protein [Pectobacterium atrosepticum SCRI1043]
          Length = 315

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 61/286 (21%), Positives = 116/286 (40%), Gaps = 30/286 (10%)

Query: 24  IQRNIQL-MGKILFLSIIMISMASELHAKPKYSS------------IVIDVNKNQMTGFK 70
           + +N +L +  +L LS   + +   +   P YS+            +V+D+  N +    
Sbjct: 1   MTKNFKLSLFGLLILSTHAVMLPQAVAKAPTYSAGNAHQEIASGSAMVVDLRDNHVLYSS 60

Query: 71  QDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQNPSKLYLKEKTYFT 127
             +   P AS+TK+MT  ++ +      L L+    + +S+T          ++  +  +
Sbjct: 61  NPDVVVPIASVTKLMTALVVLDA----NLPLDEIISVDISQT-KEMKGVYSRVRLNSEIS 115

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
               +L  +  S N  + +      G  + F   M+ KA+ +GM +T Y   +GL   N 
Sbjct: 116 RRDMLLLALMSSENRAAASLAHHYPGGYQAFIHAMNAKARALGMAHTRYVEPTGLSI-NN 174

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT--NHNKLLNK-MHNIDGI 240
           ++TARD   L ++  K +P   +  + ++    F +    +   N N L+ K   +I   
Sbjct: 175 VSTARDLTKL-LIASKQYPLLSQLSTTQEKTATFTHPAYSLPFRNTNHLVYKADWSIQLT 233

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           KTG+T  +G  +V        P+  VV+           A  L   
Sbjct: 234 KTGFTNQAGHCLVMRTVINQRPVALVVLDAFGKYTHFADANRLRKW 279


>gi|121634547|ref|YP_974792.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria meningitidis
           FAM18]
 gi|120866253|emb|CAM09994.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria meningitidis
           FAM18]
          Length = 316

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 115/247 (46%), Gaps = 13/247 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++V++    Q+   K  +   P AS++K+M+  ++ +      L +N  + ++    
Sbjct: 76  SQSALVVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDA----NLDMNETVTITPDEI 131

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   +   L   T  T ++ +   +  S N  + A G    G    F   M+ KA+ +G
Sbjct: 132 DRLKGTGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLG 191

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNRIITN 226
           M  + +   +GL+ +N ++TA+D +++     + +PQ     +      + +   +   N
Sbjct: 192 MYGSRFYEPTGLNFQN-VSTAKDLSLMVNAAAQ-YPQIRTNSTSNYASVQTKNGQQNYKN 249

Query: 227 HNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+   M NI+  KTGY R +G ++V     ++ P+  V++  PTS  R   A ++ +
Sbjct: 250 SNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIES 309

Query: 286 SFLEKKT 292
             L++++
Sbjct: 310 WMLQQRS 316


>gi|117621185|ref|YP_858159.1| D-alanyl-D-alanine carboxypeptidase family protein [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117562592|gb|ABK39540.1| D-alanyl-D-alanine carboxypeptidase family protein [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 275

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 110/246 (44%), Gaps = 22/246 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT---A 110
           S++V+DV   +    K     R  AS+TK+MT  ++ +  Q     L   + + +    A
Sbjct: 38  SALVMDVGTGKTLYQKNATRVRPIASITKLMTALVVLDARQD----LGQTLTIDQNDRDA 93

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S++  +  T  +    +   +  S N +++A      G    F   M+NKAK++G
Sbjct: 94  IKHTYSRV--RMGTQVSRRDALHLALMSSENRMASALARHYPGGRPAFVRAMNNKAKQLG 151

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF--SIRKFRYRN----RII 224
           M+N+ + +++GL  +N ++TA+D A L     +  P   ++   + +  R+R      + 
Sbjct: 152 MRNSRFYDSTGLSTRN-VSTAQDLAKLIAAAYRQ-PLIREFTQDTSKDMRFRTPAYSLMF 209

Query: 225 TNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM---GMPTSQERDQKA 280
            N N L+ N   ++   KTG+T  +G  ++   +  +  +  V++   G  T      + 
Sbjct: 210 NNTNPLVKNPDWDVRLSKTGFTDEAGRCLLMRAKPDNRELAIVLLNSVGKRTPVGDANRI 269

Query: 281 LELITS 286
            + + S
Sbjct: 270 RKWLKS 275


>gi|319410119|emb|CBY90455.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase;
           DD-peptidase; DD-carboxypeptidase) [Neisseria
           meningitidis WUE 2594]
          Length = 316

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 115/247 (46%), Gaps = 13/247 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++V++    Q+   K  +   P AS++K+M+  ++ +      L +N  + ++    
Sbjct: 76  SQSALVVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDA----NLDMNETVTITPDEI 131

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   +   L   T  T ++ +   +  S N  + A G    G    F   M+ KA+ +G
Sbjct: 132 DRIKGTGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLG 191

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNRIITN 226
           M  + +   +GL+ +N ++TA+D +++     + +PQ     +      + +   +   N
Sbjct: 192 MYGSRFYEPTGLNFQN-VSTAKDLSLMVNAAAQ-YPQIRTNSTSNYASVQTKNGQQNYKN 249

Query: 227 HNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+   M NI+  KTGY R +G ++V     ++ P+  V++  PTS  R   A ++ +
Sbjct: 250 SNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIES 309

Query: 286 SFLEKKT 292
             L++++
Sbjct: 310 WMLQQRS 316


>gi|304387942|ref|ZP_07370115.1| D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis ATCC
           13091]
 gi|304338039|gb|EFM04176.1| D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis ATCC
           13091]
          Length = 316

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 116/247 (46%), Gaps = 13/247 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++V++    Q+   K  +   P AS++K+M+  ++ +      L +N  + ++    
Sbjct: 76  SQSALVVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDA----NLDMNETVTITPDEI 131

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   +   L   T  T ++ +   +  S N  + A G    G    F   M+ KA+ +G
Sbjct: 132 DRIKGTGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLG 191

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNRIITN 226
           M ++ +   +GL+ +N ++TA+D +++     + +PQ     +      + +   +   N
Sbjct: 192 MYSSRFYEPTGLNFQN-VSTAKDLSLMVNAAAQ-YPQIRTNSTSNYASVQTKNGQQNYKN 249

Query: 227 HNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+   M NI+  KTGY R +G ++V     ++ P+  V++  PTS  R   A ++ +
Sbjct: 250 SNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIES 309

Query: 286 SFLEKKT 292
             L++++
Sbjct: 310 WMLQQRS 316


>gi|240170567|ref|ZP_04749226.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium
           kansasii ATCC 12478]
          Length = 294

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 97/255 (38%), Gaps = 23/255 (9%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
            +   P  + IV D++  Q+   + Q+    PAS  K++   +  + L      LN+ + 
Sbjct: 39  PIPDGPAQTWIVADLDSGQVLAERDQNVAHPPASTIKVLLALVALDELD-----LNSTVV 93

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
                     + + +K    +T  Q + AL+  S ND +    + + G +      M+ K
Sbjct: 94  ADVADTQVECNCVGIKPGRTYTARQLLDALLLVSGNDAANTLAQMLGGQDVA-VAKMNAK 152

Query: 166 AKKIGMQNTIYKNASGLHDKNQI--TTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           A  +G  +T     SGL        +TA D A++      N P + +  +     +    
Sbjct: 153 AAALGAGSTHAATPSGLDGPGGSGASTAHDLAVIFRAAMAN-PVFARITAEPSAMFPGDN 211

Query: 222 --RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM------GMPTS 273
             + I N ++LL +     G KTG+T  +    V +       +V  +M      G PT 
Sbjct: 212 GDQPIVNQDELLQRYPGAIGGKTGFTNAARKTFVGAAARNGRRLVIAMMYGMVKEGGPTY 271

Query: 274 QERDQKALELITSFL 288
            +   +A  L     
Sbjct: 272 WD---QAASLFDWGF 283


>gi|319944125|ref|ZP_08018403.1| D-alanyl-D-alanine endopeptidase PbpG [Lautropia mirabilis ATCC
           51599]
 gi|319742619|gb|EFV95028.1| D-alanyl-D-alanine endopeptidase PbpG [Lautropia mirabilis ATCC
           51599]
          Length = 454

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 103/241 (42%), Gaps = 14/241 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++V+D    ++   K      P ASLTK+MT  ++ +  Q     L+ +I +        
Sbjct: 220 ALVVDPRNGKILYDKNSSAVLPIASLTKLMTAMVVLDGGQP----LDEKIRIEAEDRDTE 275

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S  +L   T  T  + +   +  S N  + A      G    F    + KA++IGM +
Sbjct: 276 RYSTSHLPVGTELTRAELMQLALMSSENRAAHALARSYPGGVTAFVAAANRKAREIGMWD 335

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNK 229
           +++ + +GL   N ++TARD A+L     + +P+  ++    + +    Y  R+    N 
Sbjct: 336 SVFLDPTGLSASN-VSTARDLALLVARSAR-YPEIRRFSVASQLQVRTAYGTRVFHTTNP 393

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           L+ N+   +   KTG+   +G  +V   R     ++ V++       R   A   I  FL
Sbjct: 394 LVGNQQWGLTVQKTGFINEAGNCVVMQARVNGRQMIIVLLDSQGRYSRVADANR-IRRFL 452

Query: 289 E 289
           E
Sbjct: 453 E 453


>gi|317491244|ref|ZP_07949680.1| D-alanyl-D-alanine carboxypeptidase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920791|gb|EFV42114.1| D-alanyl-D-alanine carboxypeptidase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 315

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 95/246 (38%), Gaps = 15/246 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  + +      + + P AS+TK+MT  +  +     K  ++  I V      +
Sbjct: 47  SAMVVDLKTHNVIYSSNPDVQVPIASITKLMTAMVALDA----KPAMDEVISVDIHNTKE 102

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  ++  +  +  Q +L  +  S N  + +      G    F   M+ KA+ +GM 
Sbjct: 103 LKGVFSRVRVGSEVSRRQMMLMALMSSENRAAASLAHHYPGGYNAFIKAMNAKARSLGMT 162

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRN----RIITN 226
           +T Y   +GL  KN ++TARD   L +   KN+P   +  +       + N        N
Sbjct: 163 HTRYVEPTGLSVKN-VSTARDLTKL-LAASKNYPLISQLSTTETQSVTFSNPVYTETFNN 220

Query: 227 HNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+      I   KTG+T  +G  +          +  VV+           A  L  
Sbjct: 221 TNHLVRNDKWAIQLTKTGFTNQAGHCLAMRTTIGGRQVALVVLDAFGKYTHFADANRLRD 280

Query: 286 SFLEKK 291
             L  K
Sbjct: 281 WMLTGK 286


>gi|268607994|ref|ZP_06141725.1| hypothetical protein RflaF_00660 [Ruminococcus flavefaciens FD-1]
          Length = 364

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 64/250 (25%), Positives = 118/250 (47%), Gaps = 25/250 (10%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  A E  A+   ++I+I+ ++N++  +  +    YPASLTK+MTL +  E  +     L
Sbjct: 96  VEFAKEFDAR---NAILINADQNEIIAYNGERYRMYPASLTKVMTLIVAVENAED----L 148

Query: 101 NTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           +  + ++    T    Q+ S+         + E  +  +I  S  D ++A  ++++GSEK
Sbjct: 149 HDTVLITDKMVTPYIEQDASRAGFLPGETPSVEALLYGMILNSGADAASAVAKYVAGSEK 208

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
           KF  LM+ KA+++G+  T + N  GLHD    +TA D A++      N     K  S  +
Sbjct: 209 KFVELMNKKAEEMGLYATHFTNVVGLHDPQHYSTAEDMAMILKYAIGN-KTCKKILSAYE 267

Query: 217 FRYRNR-----IITNHNKLLNKMHN-------IDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           +++         +T  + L  +M+        I G KTG+T  +G  I +      +  +
Sbjct: 268 YKFPETEQNPEGLTFTSTLFTRMYGDEIDGVKILGGKTGFTDKAGNCIESFAVINGETYI 327

Query: 265 AVVMGMPTSQ 274
            V+ G  T+ 
Sbjct: 328 LVLCGGTTNW 337


>gi|117927602|ref|YP_872153.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidothermus
           cellulolyticus 11B]
 gi|117648065|gb|ABK52167.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidothermus
           cellulolyticus 11B]
          Length = 465

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 60/273 (21%), Positives = 109/273 (39%), Gaps = 28/273 (10%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEP-RYPASLTKMMT 85
           L G +L +  ++ S    L   P  ++   IV D +  ++   K       PAS  K++T
Sbjct: 90  LGGPLLGVHGVVTSTGENLPPLPPTTATSFIVADADTGEVLAAKDAHRQLAPASTLKVLT 149

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
              +   L          + V   A   + +K+ +     ++    + A++  SAND + 
Sbjct: 150 AITLIPRLDPAAG-----VVVQPDAVRVDGTKVGVVAGQTYSVRDLLTAMLMMSANDAAV 204

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  +   G E+  A + + +A  +  ++T+ K   GL   NQ ++A D A++        
Sbjct: 205 ALADANGGLEQTLAEM-NAEAAWLNARDTVAKTPDGLDAPNQASSAYDLALMFRAGL-AI 262

Query: 206 PQYYKYFSIRKFRYR-----NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           P +  Y SI + ++      +  I  H++LL     + G K GYT  +  + V + R   
Sbjct: 263 PAFRTYLSITRMQFPAPKGASYQIQTHDRLLLTYPGMIGGKNGYTVAAQASYVGAARRNG 322

Query: 261 DPIVAVVMGMPTSQERDQ-----KALELITSFL 288
             I+  VM       RDQ     +   L     
Sbjct: 323 HTIIVAVM-------RDQPNFWDEVKGLFDWGF 348


>gi|149928524|ref|ZP_01916755.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Limnobacter
           sp. MED105]
 gi|149822763|gb|EDM82019.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Limnobacter
           sp. MED105]
          Length = 278

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 59/265 (22%), Positives = 112/265 (42%), Gaps = 31/265 (11%)

Query: 44  MASELHAKPKYS------------------SIVIDVNKNQMTGFKQDEPRYP-ASLTKMM 84
           ++  ++A P  S                  ++V D +  ++   K      P AS+TK+M
Sbjct: 3   LSPAINAAPSQSERANLKEAHDPLSLNSSVALVADADSLEVLYAKNPSAVVPIASITKIM 62

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDV 143
           T+ +  E      L+L+  I ++         ++  LK  + FT  + I   +  S N  
Sbjct: 63  TVVVTLEAG----LNLDEVITITTEDIDYYKNTRSRLKPGSEFTRRELIHLALMASENRA 118

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           ++A G    G        M+ +A  + M NT +   +GL  +N  ++A D A + +  ++
Sbjct: 119 ASALGRSYPGGLAACVAEMNRRAASLRMFNTNFAETTGLSVEN-KSSANDLARMVLHAQR 177

Query: 204 NFPQYYKYFSIRKFRYRNRI----ITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRY 258
            FP   ++ +  +F  ++        N N+L+ NK  +I   KTG+   +G  +V   + 
Sbjct: 178 -FPLIRQFSTDPQFSVQSGKGQLNFRNTNRLIKNKEWDIQVQKTGFINEAGRCLVMKAKV 236

Query: 259 KDDPIVAVVMGMPTSQERDQKALEL 283
            D  +V V++    SQ R   A  +
Sbjct: 237 GDRNLVIVLLDALGSQARFADAERI 261


>gi|167758172|ref|ZP_02430299.1| hypothetical protein CLOSCI_00510 [Clostridium scindens ATCC 35704]
 gi|167664069|gb|EDS08199.1| hypothetical protein CLOSCI_00510 [Clostridium scindens ATCC 35704]
          Length = 342

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 63/278 (22%), Positives = 115/278 (41%), Gaps = 32/278 (11%)

Query: 35  LFLSIIMIS---MASELHAKPK--YSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           LF S + ++   +A +    P   +++ + DV   ++       +  YPAS TK+MT  +
Sbjct: 54  LFASDLCVASENVAFQGAPDPAGLHAAGLFDVEDGKVDFAYNLHDRLYPASTTKIMTALV 113

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPS----KLYLKEKTYFTTEQGILALITRSANDVS 144
                  KK +L   + V   A   N +       +K     T    +  L+  S ND +
Sbjct: 114 AL-----KKGNLTDMVTVQADADAANFAADEKTCGIKAGDQMTLGDLLHGLLMESGNDAA 168

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  ++I G+ ++FA +M+ +A+ +    T + N++GLH++N  TTA D  ++     K 
Sbjct: 169 VAIADYIGGNSEQFAQMMNEEAQALMATKTHFLNSNGLHNENHYTTAYDLYLIFNECIK- 227

Query: 205 FPQYYKYFSIRKFRYRNR-----------IITNHNKL----LNKMHNIDGIKTGYTRNSG 249
             ++    +  ++                  TN   L    L +   I G KTG T  +G
Sbjct: 228 HDEFVDIINTAEYTANITGADKTMRQVAWKQTNFYALGEAELPQSATIIGGKTGTTEPAG 287

Query: 250 FNIVTSLRY-KDDPIVAVVMGMPTSQERDQKALELITS 286
             ++   +     P +++VMG  T     Q    +I  
Sbjct: 288 NCLILLEKDSSGRPYISIVMGADTKSLLYQDMTAIING 325


>gi|225023959|ref|ZP_03713151.1| hypothetical protein EIKCOROL_00826 [Eikenella corrodens ATCC
           23834]
 gi|224942984|gb|EEG24193.1| hypothetical protein EIKCOROL_00826 [Eikenella corrodens ATCC
           23834]
          Length = 314

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/253 (21%), Positives = 107/253 (42%), Gaps = 17/253 (6%)

Query: 45  ASELHAKP---KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           A    A P     S+++++    ++   K  D+ R  AS++K+M   ++ +  Q+    +
Sbjct: 62  AQAAVAGPLLTSQSALIMNGRSGEILYQKGIDQVRPIASISKLMAAMVVLDARQN----M 117

Query: 101 NTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           N  + +++    +   +   L   T  T  + +   +  S N    A      G    F 
Sbjct: 118 NETLEITEAEIDRLKGTGSRLSVGTTLTRREMLHLGLMSSENRAIHALARNYPGGLPAFM 177

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-- 217
             M+ KA+ +GMQ T + + +GL  +N ++TARD +++       +P   ++ +      
Sbjct: 178 SAMNRKAQSLGMQQTRFYDPTGLDFRN-VSTARDLSLMVRAA-HEYPLIRQFSTSNSGSA 235

Query: 218 -RYRNRII--TNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                R+    N N L+     NI   KTGY R SG ++V     +  P++ V++  P+ 
Sbjct: 236 QTSNGRVQQYRNSNALVREGTWNISLQKTGYIRESGRSMVLYANVQRQPLIIVLLNSPSP 295

Query: 274 QERDQKALELITS 286
             R   A  +   
Sbjct: 296 TTRVNDARAIQNW 308


>gi|325200563|gb|ADY96018.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           meningitidis H44/76]
          Length = 272

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 115/247 (46%), Gaps = 13/247 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++V++    Q+   K  +   P AS++K+M+  ++ +      L +N  + ++    
Sbjct: 32  SQSALVVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDA----NLDMNETVTITPDEI 87

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   +   L   T  T ++ +   +  S N  + A G    G    F   M+ KA+ +G
Sbjct: 88  DRLKGTGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLG 147

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNRIITN 226
           M  + +   +GL+ +N ++TA+D +++     + +PQ     +      + +   +   N
Sbjct: 148 MYGSRFYEPTGLNFQN-VSTAKDLSLMVNAAAQ-YPQIRTNSTSNYASVQTKNGQQNYKN 205

Query: 227 HNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+   M NI+  KTGY R +G ++V     ++ P+  V++  PTS  R   A ++ +
Sbjct: 206 SNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIES 265

Query: 286 SFLEKKT 292
             L++++
Sbjct: 266 WMLQQRS 272


>gi|253798001|ref|YP_003031002.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis KZN 1435]
 gi|289553300|ref|ZP_06442510.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis KZN 605]
 gi|297635529|ref|ZP_06953309.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732528|ref|ZP_06961646.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis KZN R506]
 gi|313659860|ref|ZP_07816740.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis KZN V2475]
 gi|253319504|gb|ACT24107.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis KZN 1435]
 gi|289437932|gb|EFD20425.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis KZN 605]
 gi|328457775|gb|AEB03198.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis KZN 4207]
          Length = 291

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/292 (18%), Positives = 108/292 (36%), Gaps = 32/292 (10%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDE 73
           +T   G+ +   ++Q  G +             +   P  + IV D++  Q+   + Q+ 
Sbjct: 16  VTVSAGAAWADADVQPAGSV------------PIPDGPAQTWIVADLDSGQVLAGRDQNV 63

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
              PAS  K++   +  + L      LN+ +           + + +K    +T  Q + 
Sbjct: 64  AHPPASTIKVLLALVALDELD-----LNSTVVADVADTQAECNCVGVKPGRSYTARQLLD 118

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI--TTA 191
            L+  S ND +      + G +      M+ KA  +G  +T     SGL        +TA
Sbjct: 119 GLLLVSGNDAANTLAHMLGGQDVT-VAKMNAKAATLGATSTHATTPSGLDGPGGSGASTA 177

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKMHNIDGIKTGYTRN 247
            D  ++      N P + +  +     +      ++I N ++LL +     G KTGYT  
Sbjct: 178 HDLVVIFRAAMAN-PVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNA 236

Query: 248 SGFNIVTSLRYKDDPIVAVVM------GMPTSQERDQKALELITSFLEKKTL 293
           +    V +       +V  +M      G PT  ++     +   +   + ++
Sbjct: 237 ARKTFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASV 288


>gi|15842454|ref|NP_337491.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium tuberculosis
           CDC1551]
 gi|31794087|ref|NP_856580.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium bovis AF2122/97]
 gi|57117035|ref|YP_177914.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium tuberculosis
           H37Rv]
 gi|121638792|ref|YP_979016.1| putative D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|148662755|ref|YP_001284278.1| putative D-alanyl-D-alanine carboxypeptidase DacB2 [Mycobacterium
           tuberculosis H37Ra]
 gi|148824100|ref|YP_001288854.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis F11]
 gi|167969540|ref|ZP_02551817.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis H37Ra]
 gi|215404885|ref|ZP_03417066.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis 02_1987]
 gi|215412754|ref|ZP_03421466.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215428352|ref|ZP_03426271.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis T92]
 gi|215431859|ref|ZP_03429778.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis EAS054]
 gi|218754664|ref|ZP_03533460.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis GM 1503]
 gi|224991284|ref|YP_002645973.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|254233002|ref|ZP_04926329.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis C]
 gi|254365550|ref|ZP_04981595.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254551983|ref|ZP_05142430.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260187930|ref|ZP_05765404.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium
           tuberculosis CPHL_A]
 gi|260206229|ref|ZP_05773720.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium
           tuberculosis K85]
 gi|289448576|ref|ZP_06438320.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis CPHL_A]
 gi|289575616|ref|ZP_06455843.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis K85]
 gi|289746710|ref|ZP_06506088.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis 02_1987]
 gi|289751576|ref|ZP_06510954.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis T92]
 gi|289755023|ref|ZP_06514401.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis EAS054]
 gi|289763087|ref|ZP_06522465.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis GM 1503]
 gi|294993993|ref|ZP_06799684.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium
           tuberculosis 210]
 gi|298526380|ref|ZP_07013789.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306777199|ref|ZP_07415536.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu001]
 gi|306789785|ref|ZP_07428107.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu004]
 gi|306794599|ref|ZP_07432901.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu005]
 gi|306798842|ref|ZP_07437144.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu006]
 gi|306804688|ref|ZP_07441356.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu008]
 gi|306968979|ref|ZP_07481640.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu009]
 gi|306973316|ref|ZP_07485977.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu010]
 gi|307081024|ref|ZP_07490194.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu011]
 gi|307085623|ref|ZP_07494736.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu012]
 gi|308369897|ref|ZP_07419443.2| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu002]
 gi|308371173|ref|ZP_07424068.2| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu003]
 gi|308375921|ref|ZP_07445548.2| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu007]
 gi|7477960|pir||B70928 probable dacB protein - Mycobacterium tuberculosis (strain H37RV)
 gi|13882758|gb|AAK47305.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium tuberculosis
           CDC1551]
 gi|31619682|emb|CAD96622.1| PROBABLE D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACB2
           (PENICILLIN-BINDING PROTEIN) (DD-PEPTIDASE)
           (DD-CARBOXYPEPTIDASE) (PBP) (DD-TRANSPEPTIDASE)
           (SERINE-TYPE D-ALA-D-ALA CARBOXYPEPTIDASE)
           [Mycobacterium bovis AF2122/97]
 gi|41352764|emb|CAE55530.1| PROBABLE D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACB2
           (PENICILLIN-BINDING PROTEIN) (DD-PEPTIDASE)
           (DD-CARBOXYPEPTIDASE) (PBP) (DD-TRANSPEPTIDASE)
           (SERINE-TYPE D-ALA-D-ALA CARBOXYPEPTIDASE) (D-AMINO ACID
           HYDROLASE) [Mycobacterium tuberculosis H37Rv]
 gi|121494440|emb|CAL72921.1| probable D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|124602061|gb|EAY61071.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis C]
 gi|134151063|gb|EBA43108.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148506907|gb|ABQ74716.1| putative D-alanyl-D-alanine carboxypeptidase DacB2 [Mycobacterium
           tuberculosis H37Ra]
 gi|148722627|gb|ABR07252.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis F11]
 gi|224774399|dbj|BAH27205.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|289421534|gb|EFD18735.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis CPHL_A]
 gi|289540047|gb|EFD44625.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis K85]
 gi|289687238|gb|EFD54726.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis 02_1987]
 gi|289692163|gb|EFD59592.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis T92]
 gi|289695610|gb|EFD63039.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis EAS054]
 gi|289710593|gb|EFD74609.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis GM 1503]
 gi|298496174|gb|EFI31468.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308214481|gb|EFO73880.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu001]
 gi|308326092|gb|EFP14943.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu002]
 gi|308329656|gb|EFP18507.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu003]
 gi|308333795|gb|EFP22646.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu004]
 gi|308337189|gb|EFP26040.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu005]
 gi|308340920|gb|EFP29771.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu006]
 gi|308344832|gb|EFP33683.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu007]
 gi|308348780|gb|EFP37631.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu008]
 gi|308353481|gb|EFP42332.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu009]
 gi|308357346|gb|EFP46197.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu010]
 gi|308361230|gb|EFP50081.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu011]
 gi|308364850|gb|EFP53701.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis SUMu012]
 gi|323718521|gb|EGB27692.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis CDC1551A]
 gi|326904525|gb|EGE51458.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis W-148]
          Length = 291

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 54/292 (18%), Positives = 108/292 (36%), Gaps = 32/292 (10%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDE 73
           +T   G+ +   ++Q  G +             +   P  + IV D++  Q+   + Q+ 
Sbjct: 16  VTVSAGAAWADADVQPAGSV------------PIPDGPAQTWIVADLDSGQVLAGRDQNV 63

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
              PAS  K++   +  + L      LN+ +           + + +K    +T  Q + 
Sbjct: 64  AHPPASTIKVLLALVALDELD-----LNSTVVADVADTQAECNCVGVKPGRSYTARQLLD 118

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI--TTA 191
            L+  S ND +      + G +      M+ KA  +G  +T     SGL        +TA
Sbjct: 119 GLLLVSGNDAANTLAHMLGGQDVT-VAKMNAKAATLGATSTHATTPSGLDGPGGSGASTA 177

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKMHNIDGIKTGYTRN 247
            D  ++      N P + +  +     +      ++I N ++LL +     G KTGYT  
Sbjct: 178 HDLVVIFRAAMAN-PVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNA 236

Query: 248 SGFNIVTSLRYKDDPIVAVVM------GMPTSQERDQKALELITSFLEKKTL 293
           +    V +       +V  +M      G PT  ++     +   +   + ++
Sbjct: 237 ARKTFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASV 288


>gi|317500403|ref|ZP_07958627.1| serine-type D-Ala-D-Ala carboxypeptidase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316898158|gb|EFV20205.1| serine-type D-Ala-D-Ala carboxypeptidase [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 298

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 107/248 (43%), Gaps = 26/248 (10%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT--QNPSKL 118
            +     G+K  +  YPAS TK+MT Y+  +Y      +L+  + +S T+     + S  
Sbjct: 58  ADSQIKYGYKLFDKLYPASTTKVMTAYLALKYG-----NLDDVVTMSATSTNFNWDESTC 112

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            L      T    I  L+ +S ND + A  E ISGS++ FA LM+ +AK++G   T + N
Sbjct: 113 GLSAGDSLTLYDLICGLLLQSGNDCAAAIAEHISGSQEAFAELMNTEAKQLGATGTHFVN 172

Query: 179 ASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NRIITNHNKLLNK 233
             GLHD+N  TT  D  ++     K+   +    S+  +  +         T   +  N 
Sbjct: 173 PHGLHDENHYTTTYDLYLMFNEALKD-QAFLDIISMNSYTAKVTSADGTSYTPTWQATNY 231

Query: 234 MH----------NIDGIKTGYTRNSGFNIVTSLRYK--DDPIVAVVMGMPTSQERDQKAL 281
                       ++ G KTG T  +G   V         +P ++V+MG        ++  
Sbjct: 232 YSAGEATPPDGIHVYGGKTGTTDQAGNC-VILYEKNTAGEPYISVIMGASDKPLLYEEMN 290

Query: 282 ELITSFLE 289
           EL+ + ++
Sbjct: 291 ELLDAGMK 298


>gi|219558934|ref|ZP_03538010.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis T17]
 gi|260202046|ref|ZP_05769537.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium
           tuberculosis T46]
 gi|289444466|ref|ZP_06434210.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis T46]
 gi|289571098|ref|ZP_06451325.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis T17]
 gi|289417385|gb|EFD14625.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis T46]
 gi|289544852|gb|EFD48500.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis T17]
          Length = 291

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 105/287 (36%), Gaps = 35/287 (12%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDE 73
           +T   G+ +   ++Q  G +             +   P  + IV D++  Q+   + Q+ 
Sbjct: 16  VTVSAGAAWADADVQPAGSV------------PIPDGPAQTWIVADLDSGQVLAGRDQNV 63

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
              PAS  K++   +  + L      LN+ +           + + +K    +T  Q + 
Sbjct: 64  AHPPASTIKVLLALVALDELD-----LNSTVVADVADTQAECNCVGVKPGRSYTARQLLD 118

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI--TTA 191
            L+  S ND +      + G +      M+ KA  +G  +T     SGL        +TA
Sbjct: 119 GLLLVSGNDAANTLAHMLGGQDVT-VAKMNAKAATLGATSTHATTPSGLDGPGGSGASTA 177

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKMHNIDGIKTGYTRN 247
            D  ++      N P + +  +     +      ++I N ++LL +     G KTGYT  
Sbjct: 178 HDLVVIFRAAMAN-PVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNA 236

Query: 248 SGFNIVTSLRYKDDPIVAVVM------GMPTSQERDQKALELITSFL 288
           +    V +       +V  +M      G PT  +   +A  L     
Sbjct: 237 ARKTFVGAAARGGRRLVIAMMYGLVKEGGPTYWD---QAATLFDWGF 280


>gi|119773214|ref|YP_925954.1| D-alanyl-D-alanine endopeptidase [Shewanella amazonensis SB2B]
 gi|119765714|gb|ABL98284.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Shewanella amazonensis SB2B]
          Length = 303

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 62/278 (22%), Positives = 112/278 (40%), Gaps = 23/278 (8%)

Query: 26  RNIQLMGKILFLSIIMISMASEL---HAKP-----KYSSIVIDVNKNQMTGFKQDEPRYP 77
           +  + +  +L L ++  + A       AKP      YS++++D   N++          P
Sbjct: 4   KLFKYISPLLMLGLLSATSAQGAVKSDAKPTQELASYSALLVDTKTNEVLYASNPHQVVP 63

Query: 78  -ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAATQNPSKLYLKEKTYFTTEQGILAL 135
            AS++K+MT  +  +     KL L  +I V  K           ++  +  + ++ +L  
Sbjct: 64  IASISKLMTAMVTLDA----KLPLGEKIAVEVKDNPEMKNVVSRIRLGSTLSRKEAMLLT 119

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S N  +T       G  + F   M+ KAK +GM NT +   +GL   N ++TA D  
Sbjct: 120 LMSSENRAATTLAHHYPGGYQAFVKAMNAKAKALGMTNTRFVEPTGLSVHN-VSTAADLV 178

Query: 196 ILGILLRKNFPQYYKYFSI--RKFRYRNRII----TNHNKLLNKM-HNIDGIKTGYTRNS 248
            L     +++P   +  S   +   +          N N+L+NK   +I   KTG+T  +
Sbjct: 179 KLLKAA-QDYPLLGQLSSTPSKSVTFGKPRYSLAFYNTNRLVNKDNWDIRLTKTGFTDAA 237

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           G  +V   +     +  VV+     Q     A  L   
Sbjct: 238 GHCLVMLTKMAKRDVAFVVLDSFGKQTHLGDAGRLKKW 275


>gi|227543628|ref|ZP_03973677.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
           CF48-3A]
 gi|300908686|ref|ZP_07126149.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein
           [Lactobacillus reuteri SD2112]
 gi|68160975|gb|AAY86919.1| lr1832 [Lactobacillus reuteri]
 gi|227186372|gb|EEI66443.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
           CF48-3A]
 gi|300894093|gb|EFK87451.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein
           [Lactobacillus reuteri SD2112]
          Length = 403

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 147/342 (42%), Gaps = 35/342 (10%)

Query: 29  QLMGKILFLSIIMISMASELHAK---PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
           +L   IL L ++++  +  + A       ++I+ D +  Q+   +  D+    AS+TK++
Sbjct: 3   KLTVFILSLFMMLMVGSQSVLANNRIDASAAIMADASTGQIIYKQNVDKALPVASITKLL 62

Query: 85  TLYIIFEYLQSKKLHLNTQIPVS-KTAATQN---PSKLYLKEKTYFTTEQGILALITRSA 140
           T+ +I + +Q K+L  +TQ+ ++ + AA  N    S + LK    ++    I A + +SA
Sbjct: 63  TILVIEDEIQQKQLSWDTQVKITPEIAAISNDAAYSSIGLKSGQSYSVRTLINAALVKSA 122

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-------------- 186
           +  + A          +F + M  KAKKIGM  T   N+ GL + +              
Sbjct: 123 DGATVALATATGDGTDEFNLKMMQKAKKIGMTKTNIVNSVGLDNGDMKSFKLADLPNNAA 182

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLLNKMHN----- 236
              +ARD AIL     K++P+  +  + ++ ++     + +   N NK+L          
Sbjct: 183 NTMSARDVAILSQYFVKHYPELLQITAQKEVKFQIAKDQVKTEKNLNKMLPGEQYAVKGV 242

Query: 237 -IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP--TSQERDQKALELITSFLEKKTL 293
            IDG+KTG + ++G    ++ +Y+   I+ V++         R +   +L      +  L
Sbjct: 243 TIDGLKTGTSDSAGACFASTGKYQGHRIITVILHSKGSNKDNRFKATQDLYKILKTEDHL 302

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           +  +          +      +K   +  + +   D K + T
Sbjct: 303 QKIKVPSSVTTRKVANGVEKTMKLTPQHVTIWSPYDTKTNYT 344


>gi|319891642|ref|YP_004148517.1| D-alanyl-D-alanine carboxypeptidase / Penicillin binding protein
           PBP4 [Staphylococcus pseudintermedius HKU10-03]
 gi|317161338|gb|ADV04881.1| D-alanyl-D-alanine carboxypeptidase / Penicillin binding protein
           PBP4 [Staphylococcus pseudintermedius HKU10-03]
          Length = 425

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 66/331 (19%), Positives = 124/331 (37%), Gaps = 46/331 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS----------------IVIDVNKNQMT 67
           +++ I  +  + F S I+   A      P   +                I I     Q+ 
Sbjct: 1   MKKIILSIVVVFFASTIITPFARAYTPTPVELAQQSGYPVTWAYQPEGMINI-SQTGQIL 59

Query: 68  GF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKLYLKE 122
              + ++  YPAS+TK+MT+Y+  + ++ KKL LN  + ++            S   L  
Sbjct: 60  YEFQSEQQWYPASMTKLMTMYLTLQAVKEKKLSLNDTVQITDQHYRMSTLPELSNTKLYP 119

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
              +T  + +   ++ S+N  +      +S S   F   M++ AK +GM +T Y N +G 
Sbjct: 120 GETYTVAELLQITVSASSNAAALILANQVSDSTSDFVDKMNDTAKSLGMTHTHYVNPTGA 179

Query: 183 --------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
                         H+ +  ++ARD AIL   + K+ P+   +                N
Sbjct: 180 ENRLLLEFAPKKYQHESSSTSSARDYAILAQHVVKDTPKILYFTKQIAPTQHGVTYYTFN 239

Query: 229 KLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------SQERDQ 278
            LL      +   DG+KTG +  + +N   + +     I  ++MG          ++R+ 
Sbjct: 240 DLLEGGNMSLPGTDGLKTGSSDIADYNNSLTTKRGKFRIFHIIMGAGDYKHLGGEKQRNM 299

Query: 279 KALELITSFLEKKTLKHQQTHRKDNLSSTSL 309
            +   I     +   K   +  K  +   S 
Sbjct: 300 MSASAINYTFSQYDYKKIVSKGKHKIDGKSY 330


>gi|197302181|ref|ZP_03167240.1| hypothetical protein RUMLAC_00907 [Ruminococcus lactaris ATCC
           29176]
 gi|197298612|gb|EDY33153.1| hypothetical protein RUMLAC_00907 [Ruminococcus lactaris ATCC
           29176]
          Length = 464

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 65/309 (21%), Positives = 127/309 (41%), Gaps = 26/309 (8%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            +  A    S+IV+D+N   +   KQ D+P YPAS+TK++T  +  ++ +     L  ++
Sbjct: 60  PQGPAVYADSAIVMDMNSGAILYGKQIDKPHYPASITKLLTTLVALDHAK-----LTDKV 114

Query: 105 PVSKTAAT---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG----EFISGSEKK 157
             S+ + +      + + ++     T E  + A++  SAN+VS A      + + G    
Sbjct: 115 EFSQDSISFLQYGDAHIGMRAGEELTLEDSLYAVLLASANEVSYAVAESVGKQMGGDYNT 174

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL--RKNFPQYYKYFSI- 214
           F   M+ ++  +G   + + NA+GLHD+   TTA D A++G  +  ++ F    +  +  
Sbjct: 175 FIEAMNEESDALGCTGSHWTNANGLHDEQHYTTAHDMALIGAAVYQKEAFRTIAQSLTHQ 234

Query: 215 ---RKFRYRNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
                     R +   +K+L            G KTGYT  +   +VT     +  +VAV
Sbjct: 235 IPPTNLVNEVRTVNQKHKMLWPQNANYYEYCKGGKTGYTDQARTTLVTMADNGELQLVAV 294

Query: 267 VMGMPTSQERDQKALELITSFLEK-KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQF 325
           V+      +       +          +  +   + D + S   +++  +          
Sbjct: 295 VL-YDFGSDAYTDTRAIFDYGFNNFSKVMLKDLEKADGVRSYKDEENAYVVLPPNVKFSD 353

Query: 326 KKIDAKAHS 334
            K + KA  
Sbjct: 354 LKAEVKAKD 362


>gi|332528109|ref|ZP_08404140.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rubrivivax
           benzoatilyticus JA2]
 gi|332112680|gb|EGJ12473.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rubrivivax
           benzoatilyticus JA2]
          Length = 353

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 96/244 (39%), Gaps = 13/244 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++V+D   +Q+   K      P AS+TK+MT  ++ E  Q     L+  + +++      
Sbjct: 107 ALVVDQETDQILLSKNSNAVLPIASITKLMTGLLVTEAQQP----LDEVLTITQDDVDTE 162

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   L+  T  T  + +   +  S N  + A G    G    F   M+ KAK +GM +
Sbjct: 163 KGSHSRLQVGTQLTRGEMLHLALMSSENRAANALGRHYPGGLSAFVQAMNAKAKLLGMHD 222

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T Y   +GL   NQ ++ARD A+L     +  P   +  +          R       N 
Sbjct: 223 TRYVEPTGLSSNNQ-SSARDLAVLVKAAYQ-HPILRELSTSTDASVAVGRRQLQFHTTNG 280

Query: 230 LLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           L+       G+ KTGY   +G  +V   +     ++ V++       R   A  +     
Sbjct: 281 LVRNPSWEIGLQKTGYISEAGRCLVMQAQLAGRNLIMVLLDSAGKYSRIGDAERIRKWLN 340

Query: 289 EKKT 292
            + +
Sbjct: 341 SEAS 344


>gi|113969172|ref|YP_732965.1| D-alanyl-D-alanine endopeptidase [Shewanella sp. MR-4]
 gi|113883856|gb|ABI37908.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Shewanella sp. MR-4]
          Length = 318

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 60/265 (22%), Positives = 108/265 (40%), Gaps = 21/265 (7%)

Query: 37  LSIIMISMASELHAKPKY------SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
            S+   S A+   A  K       S++V+D+  N++      D  R  AS+TK+MT  + 
Sbjct: 29  ASVTTKSTATAKKAPAKQQEVAANSALVVDLKTNEILYSSNPDAVRPIASVTKLMTAMVT 88

Query: 90  FEYLQSKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            +     KL ++ ++ ++             ++  +  + +  +L  +  S N  + +  
Sbjct: 89  LDA----KLPMDEKLAININDTKEMRGVYSRVRIGSEISRKDMLLLTLMSSENRAAASLA 144

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
               G  K F   M+ KAK +GM+NT Y   +GL +KN +++ARD  +L     + +P  
Sbjct: 145 HHYPGGHKAFIKAMNAKAKALGMKNTRYVEPTGLSEKN-VSSARDLVVLLKA-SEGYPML 202

Query: 209 YKYFSI--RKFRYRNRII----TNHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDD 261
            +  S   +   +          N N+L+ K   NI   KTG+T  +G  +V        
Sbjct: 203 GQLSSTEKKTVTFGKPKYSLDFRNTNRLVYKDNWNIHLTKTGFTNEAGHCLVMRTEMAKR 262

Query: 262 PIVAVVMGMPTSQERDQKALELITS 286
            +  VV+           A  L   
Sbjct: 263 QVAFVVLDAYGKYTHMADANRLRNW 287


>gi|261822173|ref|YP_003260279.1| D-alanyl-D-alanine endopeptidase [Pectobacterium wasabiae WPP163]
 gi|261606186|gb|ACX88672.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pectobacterium
           wasabiae WPP163]
          Length = 315

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 61/286 (21%), Positives = 115/286 (40%), Gaps = 30/286 (10%)

Query: 24  IQRNIQL-MGKILFLSIIMISMASELHAKPKYSS------------IVIDVNKNQMTGFK 70
           + +N +L +  +L LS   + +   +   P YS+            +V+D+  N +    
Sbjct: 1   MTKNFKLSLFGLLVLSTHAVMLPQAMAKAPTYSAGSAHQEIASGSAMVVDLRDNHILYSS 60

Query: 71  QDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQNPSKLYLKEKTYFT 127
             +   P AS+TK+MT  ++ +      L L+    + +S+T          ++  +  +
Sbjct: 61  NPDVVVPIASVTKLMTALVVLDA----NLPLDEIISVDISQT-KEMKGVYSRVRLNSEIS 115

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
               +L  +  S N  + +      G  + F   M+ KA  +GM +T Y   +GL   N 
Sbjct: 116 RHDMLLLALMSSENRAAASLAHHYPGGYQAFIRAMNAKANALGMTHTRYVEPTGLSI-NN 174

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT--NHNKLLNK-MHNIDGI 240
           ++TARD   L ++  K +P   +  + ++    F +    +   N N L+ K   +I   
Sbjct: 175 VSTARDLTKL-LIASKQYPLLSQLSTTQEKTATFTHPAYSLPFRNTNHLVYKADWSIQLT 233

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           KTG+T  +G  +V        P+  VV+           A  L   
Sbjct: 234 KTGFTNQAGHCLVMRTVINQRPVALVVLDAFGKYTHFADANRLRKW 279


>gi|323465190|gb|ADX77343.1| penicillin binding protein 4 [Staphylococcus pseudintermedius ED99]
          Length = 425

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 66/331 (19%), Positives = 124/331 (37%), Gaps = 46/331 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS----------------IVIDVNKNQMT 67
           +++ I  +  + F S I+   A      P   +                I I     Q+ 
Sbjct: 1   MKKIILSIVVVFFASTIITPFARAYTPTPVELAQQSGYPVTWAYQPEGMINI-SQTGQIL 59

Query: 68  GF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKLYLKE 122
              + ++  YPAS+TK+MT+Y+  + ++ KKL LN  + ++            S   L  
Sbjct: 60  YEFQSEQQWYPASMTKLMTMYLTLQAVKEKKLSLNDTVQITDQHYRMSTLPELSNTKLYP 119

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
              +T  + +   ++ S+N  +      +S S   F   M++ AK +GM +T Y N +G 
Sbjct: 120 GETYTVAELLQITVSASSNAAALILANQVSDSTSDFVDKMNDTAKSLGMTHTHYVNPTGA 179

Query: 183 --------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
                         H+ +  ++ARD AIL   + K+ P+   +                N
Sbjct: 180 ENRLLLEFAPKKYQHESSSTSSARDYAILAQHVVKDTPKILYFTKQIAPTQHGVTYYTFN 239

Query: 229 KLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------SQERDQ 278
            LL      +   DG+KTG +  + +N   + +     I  ++MG          ++R+ 
Sbjct: 240 DLLEGGNMSLPGTDGLKTGSSDIADYNNSLTTKRGKFRIFHIIMGAGDYKNLGGEKQRNM 299

Query: 279 KALELITSFLEKKTLKHQQTHRKDNLSSTSL 309
            +   I     +   K   +  K  +   S 
Sbjct: 300 MSASAINYTFSQYDYKKILSKGKHKIDGKSY 330


>gi|65318836|ref|ZP_00391795.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A2012]
          Length = 293

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 52/218 (23%), Positives = 102/218 (46%), Gaps = 13/218 (5%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           R I ++  +L +   ++ + +        S+   ++++ +  ++   K + EP+  AS+T
Sbjct: 57  RRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASIT 116

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  +  E  +     +  ++ VS  A     S +YLK       E  +  L+ RS N
Sbjct: 117 KIMTALLAAESGK-----MKERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGN 171

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGIL 200
           D +    E + GS + F  LM+ KAK+I M++T + N  GL  D +  ++A D A+L   
Sbjct: 172 DAAQVIAENVGGSIEGFVYLMNEKAKQIRMKDTHFSNPHGLDGDGSHYSSAYDMALLTRY 231

Query: 201 LRKNFPQYYKYFSIRKFR--YRNRIITNHNKLLNKMHN 236
              N   + + F  + ++    +    N +KL+   ++
Sbjct: 232 AMGN-ETFKEIFGTKTYKSDSWDYPWKNKHKLVTSYYD 268


>gi|146182375|ref|XP_001024481.2| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila]
 gi|146143834|gb|EAS04236.2| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila SB210]
          Length = 583

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 60/272 (22%), Positives = 114/272 (41%), Gaps = 41/272 (15%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKK-LHLNTQIPVSKTAAT 112
           S I+++    + + G  +++ R  ASLTKMMT YI+  Y++    +   T   VS  AA 
Sbjct: 299 SWIILNGKNKKLVAGQNENQVREIASLTKMMTCYIVVHYIRKLNLIPEKTYFKVSAHAAN 358

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS--------------GSEKK- 157
           Q  +   L E    +    +  ++  S ND +    E                 G+ +  
Sbjct: 359 QPGTTAGLTEGDVVSIMDLLYGMMLPSGNDAAFVLAENFGVYLYMQTDKFKEKYGNAQTN 418

Query: 158 -----------FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
                      F   M++ A+K+ MQ+T + N  GL  K   +T+ D  +L   L  + P
Sbjct: 419 KKLKVKNPITYFIKEMNDFAEKLNMQDTYFTNPHGLMHKKNKSTSYDVGLLSYYLIHD-P 477

Query: 207 QYYKYFSIRKFRYR-----------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
              +  + + +                I  N NK+L K     G+KTG T ++G  + + 
Sbjct: 478 LIKQIMAQQTYNANIMTETLQLKNPPTIWKNTNKMLKKT-GFLGLKTGITPSAGPCLASW 536

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
             +++  ++ +++G  + +ER  + ++L+   
Sbjct: 537 YNHENINLIIILLGAKSLEERWVETVQLLEWA 568


>gi|145595002|ref|YP_001159299.1| Serine-type D-Ala-D-Ala carboxypeptidase [Salinispora tropica
           CNB-440]
 gi|145304339|gb|ABP54921.1| Serine-type D-Ala-D-Ala carboxypeptidase [Salinispora tropica
           CNB-440]
          Length = 428

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 91/251 (36%), Gaps = 22/251 (8%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMM-TLYIIFEYLQSKKLHLNTQIPVSKTA 110
             S +V D++  Q+ G         PAS+ K++ T  ++        L     + V+K  
Sbjct: 97  ATSWLVADLDTGQVLGSCGPHEYATPASVQKLLLTAALL------PDLDPQQVVTVTKED 150

Query: 111 ATQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGE--FISGSEKKFAILMSNKA 166
               P  S + L     +  E   L L+ +S ND +         +         M+  A
Sbjct: 151 LDIEPDSSAVGLLVGGQYPVETLWLGLLMQSGNDAANVLARLGGGAEGRAGGVRAMNEFA 210

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY------- 219
           + +G + T     SGL    Q T+A D A++        P + +Y      +        
Sbjct: 211 EHLGARQTHAVTPSGLDGPGQFTSAYDLALIARACFAE-PDFQRYALTETHQIPDQEALG 269

Query: 220 -RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-D 277
            +   I N N L+++     G KTG+T  +    V +       +V  ++G  +   R  
Sbjct: 270 RKGFQIQNGNSLIDRYPGALGGKTGFTTLARHTYVGAAERDGRRLVVTLLGAESRPLRGW 329

Query: 278 QKALELITSFL 288
           ++   L+    
Sbjct: 330 EQGAALLDWGF 340


>gi|117618941|ref|YP_856986.1| D-alanyl-D-alanine carboxypeptidase family protein [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117560348|gb|ABK37296.1| D-alanyl-D-alanine carboxypeptidase family protein [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 306

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 103/244 (42%), Gaps = 13/244 (5%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A    + +V +    ++   +      P AS+TK+MT  ++ +  Q     L+  + V+ 
Sbjct: 46  ALSSAAFVVANPRTGEVLSERNANRVMPIASITKLMTALVVLDANQ----RLSEMLTVTM 101

Query: 109 TAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
               +   +   L   +  +    +   +  S N  ++A      G ++ F   M+ KA+
Sbjct: 102 ADVDRLKGTGSRLAVGSRLSRADMLHIALMSSENRAASALARNYPGGQRAFIEAMNAKAR 161

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI--RKFRYRNRIIT 225
            +GM +T + +++GL     +++A D A L       +P   +Y S   R  R   R + 
Sbjct: 162 MLGMWSTQFSDSTGLT-PRNVSSAHDLAKLVAAAS-TYPLIRQYSSTEERMVRNGKRQLH 219

Query: 226 --NHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
             N N+L+      I   KTGY R +G  +V + +   +P++ V++   T   R   A  
Sbjct: 220 YLNSNRLVREGSWPISLSKTGYIREAGRCLVMATQINREPVIMVLLNADTPNARVADAKR 279

Query: 283 LITS 286
           + + 
Sbjct: 280 IKSW 283


>gi|313890335|ref|ZP_07823967.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121321|gb|EFR44428.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 412

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 68/335 (20%), Positives = 143/335 (42%), Gaps = 33/335 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTK 82
           +++ + L+  +LF  +    +A + +  P  S I  +V+  ++   K  +     ASL+K
Sbjct: 1   MKKLVFLILPLLFCFLPKTILADD-YKLPAKSGIAFEVSTGKILYEKNAKKTLPIASLSK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ +QS  L  +T + +S          + S + L  +  +T E+ + A++  
Sbjct: 60  ILTTYLVYKEVQSGNLSWDTPVKISNYPYELTTNYSISNVPLDAR-QYTVEELLTAMLVT 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           +AN  + A  E I+G+E  F   M  + ++  +      NASGL               D
Sbjct: 119 NANSPAIALAEKIAGTEPLFVDKMKKQLQEWKIHKADLVNASGLSNEQLGNHIYPNSQKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
                +A D AI+   L  ++PQ  +        +R   I ++N LL  M       +G+
Sbjct: 179 AENKMSALDLAIVTRHLLLDYPQVLELTKKPAATFRGDQIFSYNFLLEGMPNHRKGANGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE----RDQKALELITSFLEKK----T 292
              ++ N+G +++TS       +V++++    S++        A  L+ +  +K      
Sbjct: 239 FVAFSENNGASLITSSTENKMSVVSIIINTEKSKDDKLAHFTTANTLLDNIAQKYEPVTL 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
           L+  Q  +  +   T      +     +T +  +K
Sbjct: 299 LEKGQHLKNKDFPVTDSPMKHISLISDKTLTIIQK 333


>gi|15676647|ref|NP_273791.1| penicillin-binding protein 4 [Neisseria meningitidis MC58]
 gi|7225978|gb|AAF41162.1| penicillin-binding protein 4 [Neisseria meningitidis MC58]
 gi|325140094|gb|EGC62623.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
           meningitidis CU385]
          Length = 312

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 115/247 (46%), Gaps = 13/247 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++V++    Q+   K  +   P AS++K+M+  ++ +      L +N  + ++    
Sbjct: 72  SQSALVVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDA----NLDMNETVTITPDEI 127

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   +   L   T  T ++ +   +  S N  + A G    G    F   M+ KA+ +G
Sbjct: 128 DRIKGTGSRLAIGTALTRKKLLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQSLG 187

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNRIITN 226
           M  + +   +GL+ +N ++TA+D +++     + +PQ     +      + +   +   N
Sbjct: 188 MYGSRFYEPTGLNFQN-VSTAKDLSLMVNAAAQ-YPQIRTNSTSNYASVQTKNGQQNYKN 245

Query: 227 HNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+   M NI+  KTGY R +G ++V     ++ P+  V++  PTS  R   A ++ +
Sbjct: 246 SNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIES 305

Query: 286 SFLEKKT 292
             L++++
Sbjct: 306 WMLQQRS 312


>gi|148545048|ref|YP_001272418.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri DSM
           20016]
 gi|184154381|ref|YP_001842722.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus reuteri JCM
           1112]
 gi|227364195|ref|ZP_03848291.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
           MM2-3]
 gi|325683399|ref|ZP_08162915.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein
           [Lactobacillus reuteri MM4-1A]
 gi|148532082|gb|ABQ84081.1| D-Ala-D-Ala carboxypeptidase A, Serine peptidase, MEROPS family S11
           [Lactobacillus reuteri DSM 20016]
 gi|183225725|dbj|BAG26242.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus reuteri JCM
           1112]
 gi|227070740|gb|EEI09067.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
           MM2-3]
 gi|324977749|gb|EGC14700.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein
           [Lactobacillus reuteri MM4-1A]
          Length = 403

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 72/342 (21%), Positives = 144/342 (42%), Gaps = 35/342 (10%)

Query: 29  QLMGKILFLSIIMISMASELHAK---PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
           +L   IL L ++++  +  + A       ++I+ D +  Q+   +  D+    AS+TK++
Sbjct: 3   KLTVFILSLFMMLMVGSQSVLANNRIDASAAIMADASTGQIIYKQNVDKALPVASITKLL 62

Query: 85  TLYIIFEYLQSKKLHLNTQIPVS-KTAATQN---PSKLYLKEKTYFTTEQGILALITRSA 140
           T+ +I + +Q K+L  +TQ+ ++ + AA  N    S + LK    ++    I A + +SA
Sbjct: 63  TILVIEDEIQQKQLSWDTQVKITPEIAAISNDAAYSSIGLKSGQSYSVRTLINAALVKSA 122

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-------------- 186
           +  + A          +F + M  KAKKIGM  T   N+ GL + +              
Sbjct: 123 DGATVALATATGDGTDEFNLKMMQKAKKIGMTKTNIVNSVGLDNGDMKSFKLADLPNNAA 182

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLLNKMHN----- 236
              +ARD AIL      ++P+  +  + ++ ++     + +   N NK+L          
Sbjct: 183 NTMSARDVAILSQYFVTHYPELLQITAQKEVKFQIAKDQVKTEKNLNKMLPGEQYAVKGV 242

Query: 237 -IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP--TSQERDQKALELITSFLEKKTL 293
            IDG+KTG + ++G    ++ +Y+   I+ V++         R +    L      +  L
Sbjct: 243 TIDGLKTGTSDSAGACFASTGKYQGHRIITVILHSKGSNKDNRFKATQNLYKILKTEDHL 302

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           +  +          +      +K   +  + +   D K   T
Sbjct: 303 QKIKVPSSVTTRKVANGVEKTMKLTPQQVTIWSPYDTKTDYT 344


>gi|293396038|ref|ZP_06640319.1| penicillin-binding protein 7 [Serratia odorifera DSM 4582]
 gi|291421536|gb|EFE94784.1| penicillin-binding protein 7 [Serratia odorifera DSM 4582]
          Length = 274

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 63/277 (22%), Positives = 115/277 (41%), Gaps = 29/277 (10%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKM 83
           +R + L      L +I  + AS   A    + +V++ N  +    KQ   R P ASL+K+
Sbjct: 9   RRPLVLFALFSQLWLIGAAHASAPQALHSRAVLVVNANNGKTLYQKQANRRMPIASLSKL 68

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSA 140
           MT  ++ +     K  +  ++ V+  AA ++    +   L   +  +    +   +  S 
Sbjct: 69  MTAMVVLDN----KRPMGNRVKVT--AADRDLLKNTHSRLTVGSTLSRRDMLHIALMSSE 122

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           N  + A   +  G  + F   M+ KA+ +GM +T + + +GL     ++TARD       
Sbjct: 123 NRAAAALSRYYPGGRRAFVAKMNQKARALGMAHTRFYDPTGLT-PRNVSTARD------- 174

Query: 201 LRKNFPQYYKYFSIRKFRYRNR----------IITNHNKLLNKMHN-IDGIKTGYTRNSG 249
           L K     Y+Y SIR F    +          +  + N L+N     I   KTG+T  +G
Sbjct: 175 LLKMVNNAYRYQSIRHFSTDKQQIVRPGRGQLVYRSSNGLINNPSWKIQLQKTGFTNEAG 234

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
             ++     K  P++ +++G          A+ L   
Sbjct: 235 HCLIMRTVIKGQPVIMILLGSQQRYGHYSDAIRLKQW 271


>gi|295094843|emb|CBK83934.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus sp. ART55/1]
          Length = 321

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 111/269 (41%), Gaps = 24/269 (8%)

Query: 40  IMISMASELHAK---PKYSSIVIDVNK-NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
            +I+   E+ A      Y+++++D    + +         YPAS+TK+MT  ++ E ++ 
Sbjct: 51  AVIAQGEEIDAANYNGCYAAMLVDETTKDTIVAHNVHGKIYPASMTKIMTGILVMESIEK 110

Query: 96  KKLHLNTQIPVSKTAATQNPSKL--YLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             + L+  + +++     +   +   L      T +  +  L+  S ND      E I+G
Sbjct: 111 GDISLDDVVTLNRKVTFDDWDAMASDLVGGCSLTVKNLLYGLMITSYNDCGVILAELIAG 170

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           SE  F  +M+ KAK+IG  NT + N  GLHD +  TTA D  ++     K     Y   S
Sbjct: 171 SESAFCDMMNEKAKEIGATNTHFVNCHGLHDDDHYTTAYDLYLIIKEFSK-HDLAYVIDS 229

Query: 214 IRKFRYRNR---------IITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRY 258
           +  + +             I   N+ L         ++I   KTG T  +   ++  L+ 
Sbjct: 230 LDTYDFTYTDADGNEQVVTIEPTNEFLTGEVNFPDGYSIGSWKTGTTEEALNCLIMELKN 289

Query: 259 K--DDPIVAVVMGMPTSQERDQKALELIT 285
               +  +A+V G    +       ELI 
Sbjct: 290 DSTGEEYIALVAGADGKEALYSAMTELIN 318


>gi|308186137|ref|YP_003930268.1| penicillin-binding protein 7 [Pantoea vagans C9-1]
 gi|308056647|gb|ADO08819.1| penicillin-binding protein 7 [Pantoea vagans C9-1]
          Length = 315

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 61/281 (21%), Positives = 121/281 (43%), Gaps = 31/281 (11%)

Query: 29  QLMGKILFLSIIMISMASELH---------AKPKY---SSIVIDVNKNQMTGF-KQDEPR 75
            L+   L +S  ++S+ ++           A+P+    S++++D+  N++      D  R
Sbjct: 8   TLLSLALLVSGQIVSLPAQATTSLSQLTPIAQPQIASGSAMIVDLTTNKVLFSSHPDRVR 67

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQN-PSKLYLKEKTYFTTEQGI 132
             AS+TK+MT  ++ +      L +N    + +S+T   +   S++ L   +  +    +
Sbjct: 68  PIASITKLMTAMVVLDAH----LPMNEMINVDISQTPEMRGVFSRVKL--NSQISRRNMM 121

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           L  +  S N  + +      G  + F   M+ KA+ +GM+ T Y   +GL  +N +++A+
Sbjct: 122 LLALMSSENRAAASLAHAYPGGYRAFIQAMNAKARSLGMKQTRYVEPTGLSTQN-VSSAQ 180

Query: 193 DQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT--NHNKLLNKMHN-IDGIKTGYT 245
           D   L    R+ +P      + ++    F + +  +   N N L+ K    I   KTGYT
Sbjct: 181 DLVKLLKATRE-YPMLGALSTTKEETAVFAHPSYALPFRNTNHLVYKNDWHIQLTKTGYT 239

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
             +G  +V      + P+  VV+           A  L + 
Sbjct: 240 DEAGHCLVMRTMINNRPVALVVLDAFGKYTHFADANRLRSW 280


>gi|299538496|ref|ZP_07051779.1| D-alanyl-D-alanine carboxypeptidase [Lysinibacillus fusiformis ZC1]
 gi|298726083|gb|EFI66675.1| D-alanyl-D-alanine carboxypeptidase [Lysinibacillus fusiformis ZC1]
          Length = 305

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 111/234 (47%), Gaps = 20/234 (8%)

Query: 56  SIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKTA 110
           +I++++++NQ +   K +E  YPASLTKMMT+ +  E + +    L  +I     + +  
Sbjct: 58  AILVNLDENQIVLDKKSEEKIYPASLTKMMTVLVAIEQISN----LQEEIILPKHIFRDL 113

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             +N S          T E  +   +  S  + S    E+++GSE+ F  LM+ KA+++G
Sbjct: 114 LEENASVAGFLPNEKVTVEDLLYGSMLPSGAEASLGLAEYVAGSERGFVKLMNEKAQQLG 173

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLR--KNFPQYY--KYFSIRKFRYRNRIITN 226
           M+NT + N +GLH  +  TT +D ++L        +F   Y  + +SI+        IT 
Sbjct: 174 MKNTHFVNTTGLHHSDHYTTVKDMSLLLQYALTNDDFRNVYTAERYSIKSTNLHPEGITF 233

Query: 227 HNKLLNKM-------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            +++   M         I G KTGYT ++G  + +         V V +G   S
Sbjct: 234 TSRMFQHMTSSALPGGEILGGKTGYTEDAGLCLASLALINGQEYVLVTVGADGS 287


>gi|260583975|ref|ZP_05851723.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella elegans
           ATCC 700633]
 gi|260158601|gb|EEW93669.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella elegans
           ATCC 700633]
          Length = 464

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 80/369 (21%), Positives = 151/369 (40%), Gaps = 46/369 (12%)

Query: 2   LQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASEL------HAKPKYS 55
           L+ K +       LT  +G+I +   I L+  I   ++ ++ +            KPK S
Sbjct: 12  LEYKRKGEKFLRKLTKFFGTISVLCLIGLVKPIAAETVDIVELTKNAGYEVNPDDKPK-S 70

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           SIV+D    ++      DE R PAS++K++T+Y++ E +Q  +L L+ +I  +K     +
Sbjct: 71  SIVVDAYTGRILWQDNIDEERDPASISKVLTVYLVMEAIQKGELSLSQKITATKEDEAIS 130

Query: 115 ----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S   + E   +  E+ I   +  S+N  +      +      F   M+ KAK++G
Sbjct: 131 NIYAISNNKIIEGVEYPIEELIKMTLVPSSNAATIMLANTLDKDSAAFIGKMNAKAKELG 190

Query: 171 MQNTIYKNASGL---------------HDKNQITTARDQAILGILLRKNFPQYYKYF--- 212
           M +T + NASG                  K   TTARD AIL + L  ++PQ  +Y    
Sbjct: 191 MNHTTFNNASGAVAELFQGYYQPEGYDASKPNQTTARDLAILAMDLMNHYPQVLQYTNSA 250

Query: 213 --SIRKFRYRNRIITNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
                +          +N  L      +  ++G+KTG +    FN + +       +V V
Sbjct: 251 VVKTMEGTPYEEKFDTYNYSLPGAKYGIEGVNGLKTGSSGYGAFNYIATYEKDQMKLVEV 310

Query: 267 VMGMPTSQERDQKALE------LITSFLEKKTLKHQQTHRKDNL----SSTSLKKSLMIK 316
           V+G+     +  + +       ++   LE  + +      + N      +T+    ++++
Sbjct: 311 VLGVGDWYNQAGEMIRHTFGNAILNYVLEHFSFQTILPAGEHNFDGHKITTNQPLQMIVE 370

Query: 317 KLKRTYSQF 325
             K+   + 
Sbjct: 371 NGKKPEWEV 379


>gi|182437561|ref|YP_001825280.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178466077|dbj|BAG20597.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 311

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 105/281 (37%), Gaps = 25/281 (8%)

Query: 32  GKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLTKMMTLY 87
           G +L  S    +  +     PK  +    V++    +    K  D  R   S TK+MT  
Sbjct: 34  GAVLAGSAFASTAHAATPPTPKIVAKGGFVMNDGTGKTLFTKSADTRRSTGSTTKIMTAL 93

Query: 88  IIFEYLQSKKLHLNTQIPV----SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           ++      K ++L +++ V    S     +N S   L      T  Q +  L+  S  D 
Sbjct: 94  VVL---SQKNVNLKSKVTVQKAYSDYIVKKNASSARLIVGDKPTVGQLLYGLMLPSGCDA 150

Query: 144 STAFGEFISGS------EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           + A  +            K F   M+  AK + ++NT + +  G+   N  +T RD   +
Sbjct: 151 AYALADKFGSGKTRAARVKSFIGKMNATAKSLKLKNTHFDSFDGIGGGNNYSTPRDLTKI 210

Query: 198 GILLRKN--FPQYYKY------FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
                KN  F    K        + +   YR     N NK+L+      G+KTG    + 
Sbjct: 211 ASKAMKNATFRSIVKTKSTKQKVTTKSGGYRYMSWNNTNKMLSSYSGDIGVKTGSGPTAK 270

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           + +V +   K   ++  V+   +   R   A +L+    +K
Sbjct: 271 YCLVFAATRKGKTVIGTVLTSSSEANRTADAKKLMDYGFKK 311


>gi|315635519|ref|ZP_07890785.1| serine-type D-Ala-D-Ala carboxypeptidase [Arcobacter butzleri JV22]
 gi|315480277|gb|EFU70944.1| serine-type D-Ala-D-Ala carboxypeptidase [Arcobacter butzleri JV22]
          Length = 273

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 70/269 (26%), Positives = 117/269 (43%), Gaps = 19/269 (7%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPASL 80
              L   IL  + IM    +E +   K      S IV D+ K Q+   K  ++   PASL
Sbjct: 6   KFLLSALILIFTPIMAFSYTEANVFQKIEKDLDSIIVKDLTKKQLIFSKDANQQVSPASL 65

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           TK+MT  +  E  +     +++ + ++       P+ L  K          + A + RSA
Sbjct: 66  TKIMTAILAIESNK-----MDSVVTITADMKKVEPTILGFKVGEKIYLRDLVNAALIRSA 120

Query: 141 NDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           ND + +   ++  G ++KF  +M+ KAKK+GM  T ++N  G   KN  +TA D   L  
Sbjct: 121 NDAANSIAIYLGNGDKQKFVNMMNAKAKKLGMTKTTFQNPCGFDAKNHKSTASDLLKLTE 180

Query: 200 LLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
              KN   + +      + +      R   +   NKL  K   + G+KTGYT  +G  ++
Sbjct: 181 YAIKNS-TFNEIVRKNSYSFKAINTKRTYTVYTSNKLQPKEKYMIGVKTGYTNQAGPCLI 239

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALE 282
              +     I+ V++      E  + AL+
Sbjct: 240 ARAKEGKKDILLVMLNSHNRWENTKLALD 268


>gi|254821197|ref|ZP_05226198.1| DacB [Mycobacterium intracellulare ATCC 13950]
          Length = 295

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 98/257 (38%), Gaps = 23/257 (8%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
            +   P  + I+ D++  Q+   + Q+    PAS  K +   ++ + +      L++ + 
Sbjct: 40  PIPDGPAQTWIIADLDSGQVLAGRDQNVAHPPASTIKTLLAQVVLDSV-----SLDSTVV 94

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
                     + + +K    +T  Q +  L+  S ND +      + G +      M+ K
Sbjct: 95  ADVADTQVECNCVGIKPGRTYTARQLLDGLLLVSGNDAANTLAHMLGGPDVT-VAKMNAK 153

Query: 166 AKKIGMQNTIYKNASGLHDKNQI--TTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           A  +G  NT     SGL        +TA D A++      N P + +  +     +    
Sbjct: 154 AASLGATNTHAATPSGLDGPGGSGSSTAHDLAVIFRAAMAN-PVFAQITAEPSAMFPGDN 212

Query: 222 --RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM------GMPTS 273
             R+ITN ++LL +     G KTG+T  +    V +       +V  +M      G P+ 
Sbjct: 213 GDRLITNQDELLQRYPGAIGGKTGFTNAARKTFVGAAARGGRRLVIAMMYGLVKEGGPSY 272

Query: 274 QERDQKALELITSFLEK 290
            +   +A  L      +
Sbjct: 273 WD---QAATLFDWGFAQ 286


>gi|117921730|ref|YP_870922.1| D-alanyl-D-alanine endopeptidase [Shewanella sp. ANA-3]
 gi|117614062|gb|ABK49516.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Shewanella sp. ANA-3]
          Length = 318

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 59/265 (22%), Positives = 107/265 (40%), Gaps = 21/265 (7%)

Query: 37  LSIIMISMASELHAK------PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
            S+   S A+   A          S++V+D+  N++      D  R  AS+TK+MT  + 
Sbjct: 29  ASVTTKSTATAKKAPVKQQEVAANSALVVDLKTNEILYSSNPDAVRPIASVTKLMTAMVT 88

Query: 90  FEYLQSKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            +     KL ++ ++ ++             ++  +  + +  +L  +  S N  + +  
Sbjct: 89  LDA----KLPMDEKLAININDTKEMRGVYSRVRIGSEISRKDMLLLTLMSSENRAAASLA 144

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
               G  K F   M+ KAK +GM+NT Y   +GL +KN +++ARD  +L     + +P  
Sbjct: 145 HHYPGGHKAFIKAMNAKAKALGMKNTRYVEPTGLSEKN-VSSARDLVVLLKA-SEGYPML 202

Query: 209 YKYFSI--RKFRYRNRII----TNHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDD 261
            +  S   +   +          N N+L+ K   NI   KTG+T  +G  +V        
Sbjct: 203 GQLSSTEKKTVTFGKPKYSLDFRNTNRLVYKDNWNIHLTKTGFTNEAGHCLVMRTEMAKR 262

Query: 262 PIVAVVMGMPTSQERDQKALELITS 286
            +  VV+           A  L   
Sbjct: 263 QVAFVVLDAYGKYTHMADANRLRNW 287


>gi|331700813|ref|YP_004397772.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus buchneri
           NRRL B-30929]
 gi|329128156|gb|AEB72709.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus buchneri
           NRRL B-30929]
          Length = 434

 Score =  175 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 61/292 (20%), Positives = 125/292 (42%), Gaps = 39/292 (13%)

Query: 19  YGSIYIQRNIQLMGKILFL-SIIMISMASELHAKPKYS---------SIVIDVNKNQMTG 68
             S    R  +L   ILF+ +++ I   S +    K +         + V+D    Q+  
Sbjct: 1   MPSFTKSRQQKLNKLILFMMTLVSILTMSAISVSAKSANQQKFQAKEAYVMDAETGQVLY 60

Query: 69  FKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS----KLYLKEK 123
            K     R  ASL+K+MTLY+  + + + ++  N ++PV       + S       +K  
Sbjct: 61  QKNGSTKRPIASLSKLMTLYLTKKAIDNHQITWNQKVPVDDQLRRMSKSYEVGGFRIKRS 120

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNKAKKIGMQNTIYKNASGL 182
             +T      A +  S+N  + A G+ + G     F  +M+ +A   G+ +  + ++SGL
Sbjct: 121 KEYTVRDLYKAALIASSNPSAIALGKLVGGGNNTEFIKMMNEQAHAWGI-DATFVSSSGL 179

Query: 183 HDKN----------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
            + +                 + +A+  + +   + + FP   ++      +  N+++ N
Sbjct: 180 DNTDLSKYHYQVPHTTSKAQNMVSAKAISTVAAKVLEIFPTITQWSKQPSMKVGNQVLVN 239

Query: 227 HNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            N+LL      +K  ++DG+KTG+T N+G  I  +  +    ++A ++   T
Sbjct: 240 SNRLLPGSAFYHKSTHVDGLKTGFTVNAGLCITVTYWHDGRHLIATIIDSNT 291


>gi|227113033|ref|ZP_03826689.1| D-alanyl-D-alanine endopeptidase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 315

 Score =  175 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 115/286 (40%), Gaps = 30/286 (10%)

Query: 24  IQRNIQL-MGKILFLSIIMISMASELHAKPKYSS------------IVIDVNKNQMTGFK 70
           + +N +L +  +L LS   + +   +   P YS+            +V+D+  N +    
Sbjct: 1   MTKNFKLSLFGLLVLSTHAVMLPQAVAKAPTYSAGTAHQEIASGSAMVVDLRDNHILYSS 60

Query: 71  QDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQNPSKLYLKEKTYFT 127
             +   P AS+TK+MT  ++ +  Q     L+    + +S+T          ++  +  +
Sbjct: 61  NPDVVVPIASVTKLMTALVVLDANQP----LDEIISVDISQT-KEMKGVYSRVRLNSEIS 115

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
               +L  +  S N  + +      G  + F   M+ KA+ +GM +T Y   +GL   N 
Sbjct: 116 RRDMLLLALMSSENRAAASLAHHYPGGYQAFIRAMNAKARALGMAHTRYVEPTGLSI-NN 174

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------NRIITNHNKLLNK-MHNIDGI 240
           ++TARD   L ++  K +P   +  + ++          ++   N N L+ K   +I   
Sbjct: 175 VSTARDLTKL-LIASKQYPLLGQLSTTQEKTATFSHPAYSQPFRNTNHLVYKADWSIQLT 233

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           KTG+T  +G  +V        P+  VV+           A  L   
Sbjct: 234 KTGFTNQAGHCLVMRTVINQRPVALVVLDAFGKYTHFADANRLRKW 279


>gi|157369595|ref|YP_001477584.1| D-alanyl-D-alanine endopeptidase [Serratia proteamaculans 568]
 gi|157321359|gb|ABV40456.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Serratia
           proteamaculans 568]
          Length = 309

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 62/276 (22%), Positives = 110/276 (39%), Gaps = 23/276 (8%)

Query: 28  IQLMGKILFLSIIMISMASELHAK--------PKYSSIVIDVNKNQMTGFKQ-DEPRYPA 78
           + L+       I   ++ASE +A            S++V+D+  +++   +  DE    A
Sbjct: 10  LTLLALQAGAGIAPRALASENNAVTRAAEPELASGSAMVVDMQTHKVMYARNPDEVVPIA 69

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQNPSKLYLKEKTYFTTEQGILALIT 137
           S+TK+MT  +  +      L L+  + V              ++  +  + +  +L  + 
Sbjct: 70  SITKLMTAMVTLDAH----LPLDEMLSVDIHQTPEMKGVYSRVRLNSEISRKDMLLLALM 125

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S N  + +      G    F   M+ KAK +GM NT Y   +GL   N ++TARD   L
Sbjct: 126 SSENRAAASLAHHYPGGYGAFIKAMNAKAKSLGMTNTRYVEPTGLSIHN-VSTARDLTKL 184

Query: 198 GILLRKNFPQYYKYFSIRK----FRYRNRIIT--NHNKLL-NKMHNIDGIKTGYTRNSGF 250
            ++  K +P   +  +  +    F+  N  +   N N L+ N+  NI   KTG+T  +G 
Sbjct: 185 -LIATKQYPLIGQLSTTTERMASFKDPNYTLPFRNTNHLVYNQKWNIQLTKTGFTNEAGH 243

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            +          +  VV+           A  L T 
Sbjct: 244 CLAMRTMIGSRSVSLVVLDAFGKYTHFADANRLRTW 279


>gi|145506951|ref|XP_001439436.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124406620|emb|CAK72039.1| unnamed protein product [Paramecium tetraurelia]
          Length = 408

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 121/284 (42%), Gaps = 21/284 (7%)

Query: 18  PYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRY 76
           P  +  I R  +++ + + +S I  S+   + A+   S  +++    Q+  G  Q + R 
Sbjct: 128 PKTASSISRAKRMLPQQISISPI-DSVGPLVSAQ---SWCILNGKNGQLMSGQHQYKSRQ 183

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLN-TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
            AS+TK+MT ++  +  Q   L L+ T   V + A     +   L      +    +  L
Sbjct: 184 MASITKIMTCWLALKLTQQYHLDLDNTYFTVPEKAERIGGTTAQLSSGDKLSIRDLLYGL 243

Query: 136 ITRSANDVSTAFGEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASG----LHDKNQITT 190
           +  S ND + +        +   F   M+  A+ IGM+ T Y N  G    L+ ++  ++
Sbjct: 244 MLPSGNDAAISIQHNFELYKGCDFIQQMNQSAQDIGMEMTSYSNPHGMNSCLYHEDNYSS 303

Query: 191 ARDQAILGILLRKN--FPQYYK---YFSIRKFRY---RNRIITNHNKLLNKMHNIDGIKT 242
           A D  +L     +N  F    K   YFS  + ++   +     N NK+L       G+KT
Sbjct: 304 AYDIGVLTYNAMQNLQFASIVKTKIYFSEIEDKFGESKEIFWENTNKML--YQGFRGVKT 361

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           G T+ +G  +V       +  + V++   +  +R Q  ++L+  
Sbjct: 362 GITKEAGPCVVEYFEDNQNSYIIVLLNCRSVDQRWQDTIKLLDW 405


>gi|145487772|ref|XP_001429891.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124396985|emb|CAK62493.1| unnamed protein product [Paramecium tetraurelia]
          Length = 318

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 108/284 (38%), Gaps = 32/284 (11%)

Query: 64  NQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKE 122
                 K        ASLTK+MT Y   +     +    T I + + A     +  +L+ 
Sbjct: 35  GDELASKSPSLKLEVASLTKIMTAYTAIQLSDIIQFQNETFIRIPRIATQIGGTSAFLRR 94

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFIS-----------------------------G 153
               + E+ + AL+  S ND + +                                    
Sbjct: 95  DDTLSLEELLYALMLPSGNDAAISIALHFGSILNTHRRQKIASYITCDTIQGFYDDTQMS 154

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           +  +F   M+  A K+GM+++ + N  GL  K   +TA D   +     K  P   +  +
Sbjct: 155 NMNRFVRQMNENAMKLGMRDSQFSNPHGLSSKANKSTALDMCRMSSAYMK-IPILKQICN 213

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
            + +  RN    N N+LL    N  GIKTG T N+G  +  S       I+ V++G    
Sbjct: 214 SKSYSCRNYEWFNTNQLL-HFENYSGIKTGITPNAGACLAVSYESLLGSIIVVLIGAKDQ 272

Query: 274 QERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKK 317
           + R ++  +LI     + TL   +T      ++ S  +S +IKK
Sbjct: 273 KRRFEETDKLINWVSREYTLYFNKTMYAPPRTAQSKGRSFIIKK 316


>gi|254518434|ref|ZP_05130490.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp.
           7_2_43FAA]
 gi|226912183|gb|EEH97384.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp.
           7_2_43FAA]
          Length = 429

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 67/275 (24%), Positives = 115/275 (41%), Gaps = 38/275 (13%)

Query: 24  IQRNIQLMGKILFLSI-IMISMASELHAKPK---------YSSIVIDVNKNQMTGFKQDE 73
           +++   L    + LSI ++   A+++ A+            +++ +D+N  ++   K  +
Sbjct: 1   MKKKNLLKSLAVALSISLLAPFANKVSAQETNIQTPEIIGEAAVTMDINTGEIIYSKNAD 60

Query: 74  -PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY----LKEKTYFTT 128
               PAS TK+MT  +  E         +  +  S T      + L     +      + 
Sbjct: 61  LKLSPASTTKLMTALLFAENKSK-----SDTLTFSDTVVKVTETSLNNYKAINPGDKISA 115

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------ 182
           E  + A++  SAND +    E + G+   F  +M++KA ++G++NT + N SGL      
Sbjct: 116 EDTMKAVMIFSANDTAYLMAESVGGTVDNFINMMNDKAAELGLKNTHFVNPSGLEIDPLN 175

Query: 183 --HDKNQITTARDQAILGILLRKN-------FPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
             + +   TTA D A +GI   KN        P+  +            II + NKLL K
Sbjct: 176 PSNTEINQTTAYDLAQIGIAAFKNDWVRETMAPKSGEISV--SLSGTPIIIESRNKLLGK 233

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             NI G KTG    +G   V         +V VV+
Sbjct: 234 NGNI-GGKTGTEEQAGHCFVGFYERDGRDLVTVVL 267


>gi|167838920|ref|ZP_02465697.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis MSMB43]
          Length = 349

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 100/237 (42%), Gaps = 17/237 (7%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-- 114
           ++D +  +    +  +   P AS+TK+MT  ++ +     K  L+  I V+     Q+  
Sbjct: 102 MVDQHTGEALFDRNSQSVAPIASVTKLMTAMVVLDS----KAPLDEPIEVTDDDRDQDKF 157

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+L +   +  T +  +   +  S N  + A   +  G    F   M+ KA+ +GM +
Sbjct: 158 TGSRLAI--GSTLTRDDMLHIALMASENRAAAALSRYYPGGRDAFVDAMNQKARSLGMVD 215

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T ++N +GL  K+ ++TARD   +     + +P   +Y +  K+      R     + N 
Sbjct: 216 THFENPTGLS-KHNVSTARDLVKMVEAAYQ-YPLIRQYSTDLKYDVDTGLRTLYYHSTNI 273

Query: 230 LLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL       G+ KTGY + SG  +V         +V V++           A  L T
Sbjct: 274 LLRDDDWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFFDAARLRT 330


>gi|83719638|ref|YP_442398.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis E264]
 gi|83653463|gb|ABC37526.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis E264]
          Length = 415

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 97/238 (40%), Gaps = 13/238 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + V+D N  +    K      P AS+TK+MT  ++ +     K  L  QI V+       
Sbjct: 165 AYVVDQNTAEPLFDKNSRAVVPIASITKLMTAMVVLDS----KAPLTEQIDVTDEDRDYE 220

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +   L   +  + E  +   +  S N  + A   +  G    F   M+ KAK +GM +
Sbjct: 221 KGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMNAKAKSLGMND 280

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI----ITNHNK 229
           T ++N++GL  +N +++ARD   +     + +P   K+ + R +            + N 
Sbjct: 281 THFENSTGLSSQN-VSSARDLVKMVNAAYQ-YPLIRKFSTDRSYEVNTGKRMLAYNSTNA 338

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L+ N   +I   KTG+   +G  +V        PIV V++       R   A  +   
Sbjct: 339 LVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRPIVMVLLDSFGKYSRFADASRVRNW 396


>gi|262370174|ref|ZP_06063501.1| D-alanyl-D-alanine endopeptidase [Acinetobacter johnsonii SH046]
 gi|262315213|gb|EEY96253.1| D-alanyl-D-alanine endopeptidase [Acinetobacter johnsonii SH046]
          Length = 351

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 108/244 (44%), Gaps = 15/244 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             +++V+D N  ++   K  +     AS+TK+MT  +I +     +L+++  I + +   
Sbjct: 107 ARAALVMDGNTGEVLYSKNSNTALPIASITKLMTAVVISDA----RLNMSENITLQQADF 162

Query: 111 --ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
             +    S   L+        + +L  + +S N  ++A      G    F   M+ KAK 
Sbjct: 163 SCSGCKSSSSSLRAGDSMNRAEALLFALMKSENPAASALARTYPGGRSAFVSAMNAKAKS 222

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR--NRII-- 224
           +GM +T Y  ++GLH    I +ARD  IL     + +    ++ +   + +    R++  
Sbjct: 223 LGMNSTHYMESTGLH-PGNIASARDLGILVNAASQ-YGLIRQFSTTASYDFNLGYRVLKS 280

Query: 225 TNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            N N L+ N   NI+  KTG+   +G  +V      + P V V++G  +S  R   A  L
Sbjct: 281 NNTNALVRNGGWNINISKTGFINEAGRCVVMHTTLNNRPAVVVLLGADSSAARTNDATRL 340

Query: 284 ITSF 287
           +   
Sbjct: 341 MNWA 344


>gi|315659004|ref|ZP_07911871.1| penicillin binding protein 4 [Staphylococcus lugdunensis M23590]
 gi|315496128|gb|EFU84456.1| penicillin binding protein 4 [Staphylococcus lugdunensis M23590]
          Length = 432

 Score =  175 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 113/277 (40%), Gaps = 29/277 (10%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  ++  Y AS+TK+MT+Y+  E ++   L L+ ++ +++           S
Sbjct: 59  QTGQILYNYHGNKKWYLASMTKLMTMYLTLEAVKKGDLSLDDKVKITQNHYRMSTLPELS 118

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T  + +   ++ S+N  +      +SG+   F  LM+ KAK++GM +T +
Sbjct: 119 NTKLYPGEVYTIAELLQITVSNSSNAAALILANKVSGNVTSFTKLMNKKAKELGMTHTYF 178

Query: 177 KNASG--------------LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G               +D N  +TA+D AIL   +  + P    +           
Sbjct: 179 TNPTGAENTQLQEFAPKLTTNDNNSTSTAKDYAILDQHVIADTPNILHFTKQLAPTQHGV 238

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------ 272
                N  L      +   DG+KTG +  + +N   + +     I  V++G+        
Sbjct: 239 TYYTFNHSLEGASLSLPGTDGLKTGSSDIANYNHTITTKRGKFRINQVILGVGDYNNLGG 298

Query: 273 SQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSL 309
            +ER++    ++ S   +   K   +  + N++  + 
Sbjct: 299 EKERNKMGNAIMESSFNQYAYKKVLSKGEHNINGKTY 335


>gi|41409077|ref|NP_961913.1| DacB [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41397436|gb|AAS05296.1| DacB [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 289

 Score =  175 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 96/257 (37%), Gaps = 23/257 (8%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
            +   P  + I+ D++  Q+   +       PAS  K +   ++ + +      L+  + 
Sbjct: 34  PIPDGPAQTWIIADLDSGQVLAGRDPNVAHPPASTIKTLLAQVVLDEV-----SLDATVV 88

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
                     + + +K    +T  Q + AL+  S ND +      + G E      M+ K
Sbjct: 89  ADAADTQVECNCVGIKPGRSYTARQLLDALLLVSGNDAANTLAHMLGGPEAT-VAKMNAK 147

Query: 166 AKKIGMQNTIYKNASGLHDKNQI--TTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           A  +G  NT     SGL   N    +TA D A++      N P + +  +     +    
Sbjct: 148 AAALGATNTHASTPSGLDGPNGSGSSTAHDLAVIFRAAMAN-PVFAQITAEPSAMFPGDN 206

Query: 222 --RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM------GMPTS 273
             + ITN ++LL +     G KTG+T  +    V +       +V  +M      G P+ 
Sbjct: 207 GLQPITNQDELLQRYPGAIGGKTGFTNAARKTFVGAAARGGRRLVIAMMYGLIKEGGPSY 266

Query: 274 QERDQKALELITSFLEK 290
            +   +A  L      +
Sbjct: 267 WD---QAATLFDWGFAQ 280


>gi|114048686|ref|YP_739236.1| D-alanyl-D-alanine endopeptidase [Shewanella sp. MR-7]
 gi|113890128|gb|ABI44179.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Shewanella sp. MR-7]
          Length = 318

 Score =  175 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 101/244 (41%), Gaps = 15/244 (6%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
              S++V+D+  N++      D  R  AS+TK+MT  +  +     KL ++ ++ ++   
Sbjct: 50  AANSALVVDLKTNEILYSSNPDAVRPIASVTKLMTAMVTLDA----KLPMDEKLAININD 105

Query: 111 AT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                     ++  +  + +  +L  +  S N  + +      G  K F   M+ KAK +
Sbjct: 106 TKEMRGVYSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGHKAFIKAMNAKAKSL 165

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI--RKFRYRNRII--- 224
           GM+NT Y   +GL +KN +++ARD  +L     + +P   +  S   +   +        
Sbjct: 166 GMKNTRYVEPTGLSEKN-VSSARDLVVLLKA-SEGYPMLGQLSSTEKKTVTFGKPKYSLD 223

Query: 225 -TNHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
             N N+L+ K   NI   KTG+T  +G  +V         +  VV+           A  
Sbjct: 224 FRNTNRLVYKDNWNIHLTKTGFTNEAGHCLVMRTEMAKRQVAFVVLDAYGKYTHMADANR 283

Query: 283 LITS 286
           L   
Sbjct: 284 LRNW 287


>gi|289551493|ref|YP_003472397.1| D-alanyl-D-alanine carboxypeptidase/Penicillin binding protein PBP4
           [Staphylococcus lugdunensis HKU09-01]
 gi|289181024|gb|ADC88269.1| D-alanyl-D-alanine carboxypeptidase/Penicillin binding protein PBP4
           [Staphylococcus lugdunensis HKU09-01]
          Length = 432

 Score =  175 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 113/277 (40%), Gaps = 29/277 (10%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  ++  Y AS+TK+MT+Y+  E ++   L L+ ++ +++           S
Sbjct: 59  QTGQILYNYHGNKKWYLASMTKLMTMYLTLEAVKKGDLSLDDKVKITQNHYRMSTLPELS 118

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T  + +   ++ S+N  +      +SG+   F  LM+ KAK++GM +T +
Sbjct: 119 NTKLYPGEVYTIAELLQITVSNSSNAAALILANKVSGNVTSFTKLMNKKAKELGMTHTYF 178

Query: 177 KNASG--------------LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G               +D N  +TA+D AIL   +  + P    +           
Sbjct: 179 TNPTGAENTQLQEFAPKLTTNDNNSTSTAKDYAILDQHVIADTPNILHFTKQLAPTQHGV 238

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------ 272
                N  L      +   DG+KTG +  + +N   + +     I  V++G+        
Sbjct: 239 TYYTFNHSLEGASLSLPGTDGLKTGSSDIANYNHTITTKRGKFRINQVILGVGDYNNLGG 298

Query: 273 SQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSL 309
            +ER++    ++ S   +   K   +  + N++  + 
Sbjct: 299 EKERNKMGNAIMESSFNQYAYKKVLSKGEHNINGKTY 335


>gi|145224758|ref|YP_001135436.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium gilvum
           PYR-GCK]
 gi|145217244|gb|ABP46648.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium gilvum
           PYR-GCK]
          Length = 313

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/311 (17%), Positives = 118/311 (37%), Gaps = 37/311 (11%)

Query: 5   KIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAK------------- 51
                A + ++ +P  +  +      +  IL  S ++   AS +                
Sbjct: 2   NTTGRAGRGWIDFPVMTRLLASLGAALCLILAGSGVVSPTASAVPVTGIVQPAGSVPVPD 61

Query: 52  -PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
            P  + ++ D++   +   +Q+  R+ PAS  K++   ++ +     +L L+  +  ++ 
Sbjct: 62  GPAQAWVLADMDTGAVLAARQENGRFAPASTIKILLAMVVLD-----ELPLDATVVANEA 116

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 +   +   T +TT Q +  L+  S ND +      + G +      M+ KA  +
Sbjct: 117 DTRVECNCAGVAPGTTYTTRQLLEGLLLVSGNDAANTLATMLGGRDAA-VAKMNAKAAGL 175

Query: 170 GMQNTIYKNASGLHDK--NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR----I 223
           G   T   + SG+     +  +T RD A+L       +P + +  +     +  +    +
Sbjct: 176 GAHGTRAGSPSGIDGPGIDIWSTPRDLAVLFRAAMA-YPVFAQITAQPTAVFPTKSGDVV 234

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM------GMPTSQERD 277
           + N +++L++     G KTGYT  +    V         +V  +M      G PT  +  
Sbjct: 235 LVNQDEMLHRYPGTFGGKTGYTDLARKTFVAGASRNGRHLVVAMMYGLVTEGGPTYWD-- 292

Query: 278 QKALELITSFL 288
            +A  L+    
Sbjct: 293 -QASALLDWGF 302


>gi|167570535|ref|ZP_02363409.1| family S11 unassigned peptidase [Burkholderia oklahomensis C6786]
          Length = 363

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 100/238 (42%), Gaps = 13/238 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + V+D N ++    K      P AS+TK+MT  ++ +     K  L  QI V+       
Sbjct: 113 AYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVVDS----KAPLTDQIEVTDEDRDYE 168

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +   L   +  + E  +   +  S N  + A   +  G    F   M+ KAK +GM +
Sbjct: 169 KGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYFPGGRPAFIAAMNAKAKALGMTD 228

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF--RYRNRII--TNHNK 229
           T ++N++GL  +N +++ARD   +     + +P   K+ + R +      R +   + N 
Sbjct: 229 THFENSTGLSSQN-VSSARDLVKMVNAAYQ-YPLIRKFSTDRSYEVDTGKRTLAYNSTNA 286

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L+ N   +I   KTG+   +G  +V        PIV V++       R   A  +   
Sbjct: 287 LVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRPIVMVLLDSFGKYSRFADASRVRNW 344


>gi|297201047|ref|ZP_06918444.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sviceus ATCC
           29083]
 gi|197712169|gb|EDY56203.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sviceus ATCC
           29083]
          Length = 277

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 101/280 (36%), Gaps = 27/280 (9%)

Query: 34  ILFLSIIMISMASELHAKP--KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIF 90
           +L       + A  + A         V++    +    K  D  R   S TK+MT  ++ 
Sbjct: 1   MLTAGAFTAAPAQAVTAPSIVAKGGYVMNNANGKTLYTKAADTKRSTGSTTKIMTAKVVL 60

Query: 91  EYLQSKKLHLNTQIPV----SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
                  L+L+ ++ +    S      N S+ +L      T  Q +  L+  S  D + A
Sbjct: 61  ---AQSNLNLDKKVTIQKAYSDYIVANNASQAHLIVGDKVTVRQLLYGLMLPSGCDAAYA 117

Query: 147 FGEFISGS------EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
             +            K F   M+  A  +G++NT + +  G+ + N  +T RD   +   
Sbjct: 118 LADTYGTGSTRAARVKSFISKMNQAATSLGLRNTHFDSFDGIGNGNNYSTPRDLTKIASS 177

Query: 201 LRKNFPQYYKYFSIRKFRYRNRI----------ITNHNKLLNKMHNIDGIKTGYTRNSGF 250
             KN   +      +K+  +              TN N LL+      G+KTG    + +
Sbjct: 178 AMKNA-TFRTVVKTKKYTAKTITKTGSTRTMAPWTNTNGLLSSYSGTIGVKTGSGPEAKY 236

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            +V +       ++  V+   +  +R+  A +L+      
Sbjct: 237 CLVVAATRNGKTVIGTVLASTSITQREADAKKLLNYGFAT 276


>gi|126348215|emb|CAJ89936.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           ambofaciens ATCC 23877]
          Length = 368

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 93/262 (35%), Gaps = 20/262 (7%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLN 101
             A  +      S +V D +   +        R  PAS  K +    +   L     H  
Sbjct: 40  PGAPGVPDVSALSWVVADADSGDVLAAHDAHRRLPPASTLKTLFALTVLPVLPGGIRH-- 97

Query: 102 TQIPVSK-TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
            ++   +        S + + E   +        +   S ND        ++G     A 
Sbjct: 98  -EVRGDELNGIGPGSSLVGIVEGHTYRVSDLWNGVFLNSGNDAVHVLAS-LTGGWDATAA 155

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
            M  +A+ +G ++T  ++  G     Q+++A D A+ G    +N P + +Y +     + 
Sbjct: 156 RMQAEARALGARDTHVRSPDGYDAPGQVSSAYDLAVFGRAGLRN-PDFARYCAKVDAMFP 214

Query: 221 NR-----IITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            R      I N N+LL           + GIK GYT N+G  +V + R     +V  VM 
Sbjct: 215 GRNGDAYGIRNTNRLLTGEDGVEPYPGLIGIKNGYTSNAGNTLVAAARRDGRTLVVTVMN 274

Query: 270 --MPTSQERDQKALELITSFLE 289
                     ++A  L+    E
Sbjct: 275 PQEGGGHAVYEEARSLLDWGFE 296


>gi|26990499|ref|NP_745924.1| D-alanyl-D-alanine endopeptidase [Pseudomonas putida KT2440]
 gi|24985474|gb|AAN69388.1|AE016575_6 D-alanyl-D-alanine-endopeptidase [Pseudomonas putida KT2440]
          Length = 308

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 110/249 (44%), Gaps = 16/249 (6%)

Query: 55  SSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAAT 112
           S+++ID+N NQ       D     AS+TK+MT  ++ +     KL ++  + ++      
Sbjct: 45  SALLIDLNSNQELYSSHADRVVPIASVTKLMTAMVVLDA----KLPMDEMLTMTIANNPE 100

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  ++  +     + +L  +  S N  + +      G    F   M+ KA+ +GM 
Sbjct: 101 MKGVYSRVRLGSQLDRRETLLITLMSSENRAANSLANAYPGGYPAFIKAMNAKARSLGMA 160

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRII--TN 226
           +T Y   +GL  +N ++TARD A L +  RK +P   +  + R+    FR  N  +   N
Sbjct: 161 HTRYVEPTGLSTQN-VSTARDLAKLLMASRK-YPMLSELSTTREKTVAFRKPNYTLGFRN 218

Query: 227 HNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            + L+NK   +I   KTG+T  +G  +V   R  + P+  V++           A   + 
Sbjct: 219 TDHLVNKSNWDIKLTKTGFTNEAGHCLVLLTRMDNRPVAMVILDAFGKYTHFADASR-MR 277

Query: 286 SFLEKKTLK 294
            +LE  + K
Sbjct: 278 QWLETGSAK 286


>gi|260598596|ref|YP_003211167.1| D-alanyl-D-alanine endopeptidase [Cronobacter turicensis z3032]
 gi|260217773|emb|CBA32213.1| D-alanyl-D-alanine endopeptidase [Cronobacter turicensis z3032]
          Length = 269

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 103/241 (42%), Gaps = 15/241 (6%)

Query: 55  SSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAAT 112
           S++++D+  N++      D  R  AS+TK+MT  ++ +      L L+  + V       
Sbjct: 5   SAMIVDLRTNEVLFSSHPDLVRPIASITKVMTAMVVLDA----SLPLDEMLTVDISHTPE 60

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  ++  +  + +  +L  +  S N  + +      G    F   M+ KAK +GM+
Sbjct: 61  MKGIYSRVRLNSQISRKNMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAKALGMR 120

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIIT----N 226
           NT +   +GL   N ++TARD   L ++  K +P   +  + R+    + N   T    N
Sbjct: 121 NTRFVEPTGLSIHN-VSTARDLTKL-LIATKQYPLIGQLSTTREEMATFANPAYTLPFRN 178

Query: 227 HNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+ +   NI   KTG+T  +G  ++     K+ P+  VVM           A  L T
Sbjct: 179 TNHLVYRDNWNIQLTKTGFTNAAGHCLMMRTLIKNRPVTLVVMDAFGKYTHFADASRLRT 238

Query: 286 S 286
            
Sbjct: 239 W 239


>gi|154504456|ref|ZP_02041194.1| hypothetical protein RUMGNA_01960 [Ruminococcus gnavus ATCC 29149]
 gi|153795231|gb|EDN77651.1| hypothetical protein RUMGNA_01960 [Ruminococcus gnavus ATCC 29149]
          Length = 468

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/323 (21%), Positives = 139/323 (43%), Gaps = 34/323 (10%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHL 100
           IS   +  A    S IV+D+N   +   K+ E  RYPAS+TK++++    +Y +     +
Sbjct: 64  ISNWPQGPAIYAASGIVMDMNSGAVLYAKKAEEKRYPASITKVLSVLTALQYAK-----M 118

Query: 101 NTQIPVSKTAAT---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG-----EFIS 152
           +  +  S+ + +    + +++ +K     + E  +  ++  SAN+VS A       ++++
Sbjct: 119 SDTVVFSEDSISFLQWDDAQIGMKPGEEISMESALYGMLLASANEVSYAVAENVGKQYLN 178

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN-------F 205
           G   +F   M+  ++++G  ++ + NA+GLHD N  TTA D A +     +N        
Sbjct: 179 GGYAEFIEEMNRISQELGCTSSNWVNANGLHDDNHYTTAHDMARIAAAAYQNEEFRRLET 238

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           P  YK           RI+  ++K+L         N    KTGYT  S   +VT     D
Sbjct: 239 PLEYKVPPT-NLTAEERILDQNHKMLWPENYYYYANAKAGKTGYTDQSKTTLVTMAEGND 297

Query: 261 DPIVAVVMG--MPTSQERDQKALELITSFLEKKTLKHQQTHR-----KDNLSSTSLKKSL 313
             + AVV+      +    +   +   +  E+  L+  +T           +   + K +
Sbjct: 298 MQLAAVVLHTYGVDAYTDTRFMYDYAFTNFERLNLRECETSSDIESFDKEDAYVVVPKGV 357

Query: 314 MIKKLKRTYSQFKKIDAKAHSTQ 336
              +L++ Y   +K   +  + +
Sbjct: 358 SFSELEKEYVPNEKEGVRQAAVE 380


>gi|312961792|ref|ZP_07776290.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas fluorescens WH6]
 gi|311284051|gb|EFQ62634.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas fluorescens WH6]
          Length = 307

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 57/279 (20%), Positives = 114/279 (40%), Gaps = 21/279 (7%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK--------PKYSSIVIDVNKNQMTGFKQDEPR 75
           ++  + ++      +      A    A            S++++D+  N++      +  
Sbjct: 1   MKIRLSIVSLFFAFTGTFAHAAESTLAPRDPSKLQIASGSAMLVDLQTNKVIYASNPDVV 60

Query: 76  YP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
            P AS++K+MT  I+ E  Q+   +++  I  +            +K  +    ++ +L 
Sbjct: 61  VPIASVSKLMTGLIVLEAKQNMDEYIDINITDTPE---MKGVFSRVKIGSQMPRKEMLLI 117

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + +      G    F   M+ KAK +GM +T Y   +GL   N ++TARD 
Sbjct: 118 ALMSSENRAAASLAHHYPGGYAAFIAAMNAKAKALGMTSTHYVEPTGLSIHN-VSTARDL 176

Query: 195 AILGILLRKNFPQYYKYFSIRK----FRYRNRII--TNHNKLLNK-MHNIDGIKTGYTRN 247
           + L    RK FP   +  + ++    FR  N  +  +N + L+N+   +I   KTG+T  
Sbjct: 177 SKLLAYARK-FPMLSQLSTTKEKTVSFRKPNYTLGFSNTDHLINRANWDIKLTKTGFTNQ 235

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           +G  +V      + P+  V++           A  + + 
Sbjct: 236 AGHCLVLVTSMGNRPVSLVILDAFGKFTHFADASRIRSW 274


>gi|269122254|ref|YP_003310431.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sebaldella
           termitidis ATCC 33386]
 gi|268616132|gb|ACZ10500.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sebaldella
           termitidis ATCC 33386]
          Length = 496

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/280 (25%), Positives = 120/280 (42%), Gaps = 35/280 (12%)

Query: 69  FKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
                  +P ASL K+M + +  + +      L+ ++   +  A    S L +K    F 
Sbjct: 165 SNGSAVVHPTASLAKVMNILVALDQVDKGNKSLDDKVCFDQATANVGGSWLNVKAGECFV 224

Query: 128 TEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
               + A    SAN+ +    + I  GS  KF  LM+ KAK++GM+NT +   +GL    
Sbjct: 225 LRDLLRAENIYSANNAAYLVAKHIGNGSIDKFVELMNEKAKELGMKNTKFYTPAGLPTSM 284

Query: 187 Q-----ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RIITNHNKLLNKMHN 236
                  +TA D  +L +   K+  +  ++   ++    N      I  + N LL K   
Sbjct: 285 TGRQLDTSTADDLYLLAMAAMKD-KRIREWAGEKELILENSLGEQIIYPSRNHLLEKF-G 342

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQ 296
           I G+KTG+   SG+NI+ + +  +  IVAVV+G  T   R     +L+T   E + ++ Q
Sbjct: 343 IWGLKTGFHNLSGYNIIVTSKKGNVEIVAVVLGEVTDAART----KLLTE--EFQAIEAQ 396

Query: 297 QTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
            T               ++KK      +FK  D K  + +
Sbjct: 397 LT---------------IVKKAGSDMGEFKLKDGKKKTIK 421


>gi|213964906|ref|ZP_03393105.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium amycolatum
           SK46]
 gi|213952442|gb|EEB63825.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium amycolatum
           SK46]
          Length = 325

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 60/274 (21%), Positives = 105/274 (38%), Gaps = 22/274 (8%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             +  V D+    +   K    RY PAS+ K+    +  E L+   L L+T +  +   A
Sbjct: 20  ASAWTVFDLKSGDVLAAKDPHGRYRPASIIKV---LLAMEALED--LKLDTPVKATFEDA 74

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S++ + E   ++ E  +  L+  S ND   A    + G +K     ++  AKK+G 
Sbjct: 75  NMEGSRVGIVEDVNYSVETLLTGLLLNSGNDTGHALARELGGMDKT-TEKVNALAKKLGA 133

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--------RI 223
            +T   N +GL    Q+T+A D ++       N   Y K  + R                
Sbjct: 134 TDTRVVNPTGLDAPGQMTSAYDMSLFFQHAFNN-ETYRKLSATRLATIPGDKALEVDDFE 192

Query: 224 ITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG--MPTSQERDQKA 280
           I N N+L+        G KTG+T ++              +  VV+   +  S    Q+A
Sbjct: 193 IANDNQLIAQDYPGALGGKTGFTDDARHTFAGVAERDGRRLGVVVLDVTVEDSPRAWQQA 252

Query: 281 LELITSFL---EKKTLKHQQTHRKDNLSSTSLKK 311
             L+ +     E  ++   +   KD+  +  L  
Sbjct: 253 ASLLDAGFKAPEGSSVGVLEASTKDDNLAEKLPD 286


>gi|324989891|gb|EGC21833.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK353]
          Length = 409

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 132/330 (40%), Gaps = 42/330 (12%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +A++       S++ +D    ++   K    P    S+T ++T+Y+++E +    L  +T
Sbjct: 6   VAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLLTIYLVYEAIDRGDLTADT 65

Query: 103 QIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            + +S  A    +  N S + L+ K  +  +  I A +  S+N  + A  E + GSE+ F
Sbjct: 66  YVDISDYAYNLTSNPNISNVPLEAK-RYKVKDLIAASLMSSSNSATIALAEKVGGSEENF 124

Query: 159 AILMSNKAKKIGMQNTIYKNASGLH------------------------DKNQITTARDQ 194
             +M  K K+ G+++    N++GL+                        D     +A D 
Sbjct: 125 VQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYSASASTAKKSKDTENKFSAYDL 184

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL----NKMHNIDGIKTGYTRNSGF 250
           A++   L  +FPQ     S    +     + N+N +L    N    +DG+K G +   G 
Sbjct: 185 AVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGSSDKGGS 244

Query: 251 NIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELIT----SFLEKKTLKHQQTHRKD 302
           + V +       ++ VV+ +         R      L+     +F +   +   + + K 
Sbjct: 245 SFVATTTENGIRMITVVLDVDQTDGDPYARFVATASLMNYVSQNFTQTTIVAEGEAYNKS 304

Query: 303 NLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
             +    K+  +     + ++  ++I  +A
Sbjct: 305 RSTVIDGKQKTVPAVASKDFTIIERIANQA 334


>gi|78189048|ref|YP_379386.1| D-alanyl-D-alanine carboxypeptidase [Chlorobium chlorochromatii
           CaD3]
 gi|78171247|gb|ABB28343.1| D-alanyl-D-alanine carboxypeptidase [Chlorobium chlorochromatii
           CaD3]
          Length = 473

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 104/246 (42%), Gaps = 16/246 (6%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           + ++ +     M   K    P  PASLTK++T  +  E   S +L  +  + +++ +   
Sbjct: 65  AYMLKEYGTPSMLMGKNISTPLPPASLTKVLTSIMAIE---SGRLLQD--VVITRESTLV 119

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
            PSK              + A +  S+ND + A G ++SGS   F   M+ KA++IGM+N
Sbjct: 120 EPSKAGFTVGERIKLIDLVKAAMVSSSNDAAFAIGIYLSGSVDAFVDAMNYKARQIGMRN 179

Query: 174 TIYKNASGLHD---KNQITTARDQAILGILLRKN--FPQYYKYFSIRKFRYRNRIITN-- 226
           + + N +G         ++TA D   L     +N  F Q  +           R + N  
Sbjct: 180 SHFTNPAGYDRGQYAGNVSTAEDLMRLTEYAVRNSTFNQIARMDRAVFVEQSTRKVYNLR 239

Query: 227 -HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            HNKLL    +  GIKTG+T  +G  ++      D  ++ V++    S  R   A  +  
Sbjct: 240 THNKLLAHYPHSVGIKTGWTTRAGGCLIARAVKGDKDLLVVMLNAKIS--RWDTAASMFD 297

Query: 286 SFLEKK 291
                +
Sbjct: 298 LAFNDR 303


>gi|163814077|ref|ZP_02205469.1| hypothetical protein COPEUT_00230 [Coprococcus eutactus ATCC 27759]
 gi|158450526|gb|EDP27521.1| hypothetical protein COPEUT_00230 [Coprococcus eutactus ATCC 27759]
          Length = 331

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 107/253 (42%), Gaps = 19/253 (7%)

Query: 54  YSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           Y+++++D    + +      +  YPAS+TK+MT  ++ E ++  ++ L+  + +++    
Sbjct: 78  YAAMLLDNTTREPVIAHNAHKKIYPASMTKIMTGLLVIESIEKGEISLDDMVTLNRKVTF 137

Query: 113 QNPSKL--YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   +   L        +  +  L+  S ND      E I+GSE  F  +M+ KA++IG
Sbjct: 138 DDWDAMASDLVGGCRINVKNLLYGLMITSYNDCGVILAELIAGSESAFCDMMNEKAQEIG 197

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-KYFSIRKFRYRN-------R 222
             NT ++N  GLH  +  TTA D  ++     K+   Y     S   F Y +        
Sbjct: 198 ATNTHFENCHGLHSDDHYTTAYDLYLILDEFSKHDLAYMIDSLSTYDFTYTDADGNEQVV 257

Query: 223 IITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYK--DDPIVAVVMGMPTSQ 274
            I   N+ L         ++I   KTG T  +   ++  L+        VA++ G    +
Sbjct: 258 TIEPTNEYLTGEVNLPDGYSIGSWKTGTTEEALNCLIMELKNDSTGHEYVAIIAGADGKE 317

Query: 275 ERDQKALELITSF 287
                  E+I + 
Sbjct: 318 ALYSGMTEMINTA 330


>gi|167837175|ref|ZP_02464058.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis MSMB43]
          Length = 362

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 13/238 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + V+D N ++    K      P AS+TK+MT  ++ +     K  L  QI V+       
Sbjct: 112 AYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVLDS----KAPLTDQIDVTDEDRDYE 167

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +   L   +  + E  +   +  S N  + A   + +G    F   M+ KAK +GM +
Sbjct: 168 KGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYTGGRPAFIAAMNAKAKSLGMSD 227

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI----ITNHNK 229
           T ++N++GL  +N +++ARD   +     + +P   K+ + R +            + N 
Sbjct: 228 THFENSTGLSSQN-VSSARDLVKMVNAAYQ-YPLIRKFSTDRSYEVNTGKRMLAYNSTNA 285

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L+ N   +I   KTG+   +G  +V        PIV V++       R   A  +   
Sbjct: 286 LVRNPSWDIGLQKTGFINEAGECLVMQTTIHSRPIVMVLLDSFGKYSRFADASRVRNW 343


>gi|145299285|ref|YP_001142126.1| D-alanyl-D-alanine carboxypeptidase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852057|gb|ABO90378.1| D-alanyl-D-alanine carboxypeptidase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 251

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 101/234 (43%), Gaps = 13/234 (5%)

Query: 57  IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-N 114
           +V +    ++   +      P AS+TK+MT  ++ +  Q     L+  + V+     +  
Sbjct: 1   MVANPRTGEVLSERNANRVMPIASITKLMTALVVLDANQ----RLSETLTVTMADVDRLK 56

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            +   L   +  +    +   +  S N  ++A      G ++ F   M+ KA  +GM +T
Sbjct: 57  GTGSRLAVGSRLSRADMLHIALMSSENRAASALARHYPGGQRAFIEAMNAKASMLGMWST 116

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI--RKFRYRNRIIT--NHNKL 230
            + +++GL +   +++A D A L       +P   +Y +   R  R   R +   N N+L
Sbjct: 117 QFADSTGL-NPRNVSSAHDLAKLVAAAS-AYPLIRQYSATEQRMVRNGKRQLHYLNSNRL 174

Query: 231 LNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           + +    +   KTGY R +G  +V + +   +P++ V++   T   R   A  +
Sbjct: 175 VREGSWLVTLSKTGYIREAGRCLVMATQINREPVILVLLNADTPNARVADAKRI 228


>gi|259046993|ref|ZP_05737394.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella adiacens
           ATCC 49175]
 gi|259036312|gb|EEW37567.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella adiacens
           ATCC 49175]
          Length = 471

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/321 (19%), Positives = 137/321 (42%), Gaps = 53/321 (16%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY------------------SSIVIDVNKNQ 65
           +++ I+L+  +  L + +I   S ++A+                     +S+V+ +   +
Sbjct: 20  MKKIIKLVCVLFLLMMGVIGTISTVNAQESILKVVKDEGYEISSSDTPKASLVVSIANGE 79

Query: 66  MTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQI--PVSKTAATQ--NPSKLYL 120
           +   +  +    PASL+K+MT++I+++ ++  K+ L+ ++    +  A ++    S + L
Sbjct: 80  ILWQENPDRAVDPASLSKLMTIFIVYDAIKEGKISLSDKVVPTATDEAISKITALSNVPL 139

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
                +  E+ +   +  S+N  +      ++ +  +F  LM+ KAK++GM NT ++ A+
Sbjct: 140 TAGVEYPVEELVKMALLPSSNAATILLSHLVNDNSDEFVDLMNQKAKELGMTNTKFEGAT 199

Query: 181 GLHDKN---------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN---- 221
           G   ++                 TTARD A + I L K+ P+  +Y         +    
Sbjct: 200 GAVAEDFQGHYTVKRHSMNQPNQTTARDLAKMVIALYKSHPEITQYTRNSTLTVMSGTPY 259

Query: 222 -RIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG------M 270
            + I N N  +         I G+KTG +   GFN +   +     ++ +V+G       
Sbjct: 260 AQTIKNTNHSVQGDLLAYPGIIGLKTGTSERDGFNYIGIYQKDGVELLDIVLGVSEWTSA 319

Query: 271 PTSQERDQKALELITSFLEKK 291
                R +    L++  L++ 
Sbjct: 320 AGEYNRHKIGNALLSYVLKQY 340


>gi|330684640|gb|EGG96344.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus
           epidermidis VCU121]
          Length = 412

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 126/292 (43%), Gaps = 26/292 (8%)

Query: 64  NQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKL 118
            Q+   +  +    PAS TK+MT+ ++++ ++S K+ +N ++ ++          N +  
Sbjct: 55  GQILYDYHGNTQVDPASTTKLMTMNLVYDDIKSGKIKMNDKVKITSRYEKMSELPNLTTF 114

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            LKE T  T  Q +      S+N  +    E I GS  KF   M+ KAK +GM++T + N
Sbjct: 115 PLKEGTTVTINQLLKQAALESSNAATLVLAEHIDGSSSKFTDRMNQKAKDLGMKDTKFTN 174

Query: 179 ASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII 224
            SG                D    TTARD ++L   +    P   K   + K +  N+ +
Sbjct: 175 PSGANNKILKPYEPKSYKDDTISHTTARDMSLLSNHILNAHPDVLKITKLSKDKQSNQEL 234

Query: 225 TNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM-PTSQERDQK 279
            N N  L    + M ++DG+KTG T ++G+N+  + +     IV  +  + P   E+ + 
Sbjct: 235 HNTNTSLPNEADGMKDVDGLKTG-TSDNGYNLELTAKRNHLRIVTGIFNVKPYPDEQAKH 293

Query: 280 ALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
           A + + + L +   K     +  +     +       K K  Y    K  +K
Sbjct: 294 ARQKLANALTEHAFKQYDYRKVISKGEHEIDGKKYEVK-KDLYDLVPKDKSK 344


>gi|167913835|ref|ZP_02500926.1| family S11 unassigned peptidase [Burkholderia pseudomallei 112]
          Length = 493

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 17/237 (7%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-- 114
           ++D +  +    +      P AS+TK+MT  ++ +        L+ +I V+     Q+  
Sbjct: 115 MVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVLDS----NAPLDERIEVTDDDRDQDKF 170

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+L +   +  + +  +   +  S N  + A   +  G  + F   M+ KA+ +GM +
Sbjct: 171 TGSRLAI--GSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVD 228

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T ++N +GL  K+ +++ARD A +     + +P   +Y +  K+      R     + N 
Sbjct: 229 TYFENPTGLS-KHNVSSARDLAKMVEAAYQ-YPLIRQYSTDLKYDVDTGLRTLYYHSTNV 286

Query: 230 LLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL     NI   KTGY + SG  +V         +V V++           A  L T
Sbjct: 287 LLRDNAWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFFDAARLRT 343


>gi|163857870|ref|YP_001632168.1| D-alanyl-D-alanine carboxypeptidase [Bordetella petrii DSM 12804]
 gi|163261598|emb|CAP43900.1| probable D-alanyl-D-alanine carboxypeptidase [Bordetella petrii]
          Length = 385

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 103/245 (42%), Gaps = 13/245 (5%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +E+ A    ++ V D+  + +   K D   R  AS++K+MT  ++ +  Q     ++  +
Sbjct: 134 AEIEALRSSTAYVQDLETSTVLFAKNDNVVRPIASISKLMTALVVVDANQP----MDQML 189

Query: 105 PVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            ++         +   L   T  +    +   +  S N  + A G    G    F   M+
Sbjct: 190 EITDDDVDTLKHTSSRLVVGTRLSRGDMLHLALMSSENRAAHALGRNYPGGLPAFVEAMN 249

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR----Y 219
           +KA+ +GM +T +   +GL  +N +++ RD A L     +  P  ++Y +  ++      
Sbjct: 250 HKARALGMTSTHFIEPTGLSSQN-VSSPRDLARLLRAASQR-PLIHRYSTDDQYEVDVAN 307

Query: 220 RNRIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           R ++  N N L+ K   +I   KTGY   +G  +V   R     +  V++       R  
Sbjct: 308 RTQVFRNTNLLVRKPDWDIKVSKTGYINEAGECLVMLARINGRDVAMVLLDSQGKLSRIG 367

Query: 279 KALEL 283
            A+ L
Sbjct: 368 DAVRL 372


>gi|313616428|gb|EFR89354.1| serine-type D-Ala-D-Ala carboxypeptidase [Listeria innocua FSL
           S4-378]
          Length = 220

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 108/217 (49%), Gaps = 6/217 (2%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASLTK+MT +++ E + +KKL  + ++ + +       S   + +K  ++      A++ 
Sbjct: 5   ASLTKLMTAFLVLEAVDNKKLSWDEELDLIRLDDPSAVSLYAITQKRTWSVRDLYSAMLV 64

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDKNQI--TTARDQ 194
            SAND +   G  +   +  F   M+N+AKK+G+ + T + +ASGL    ++  +T +D 
Sbjct: 65  MSANDAAETLGNRL--DDANFPQKMNNEAKKLGLSSKTKFVSASGLDVDGKMAVSTTKDL 122

Query: 195 AILGILLRKNFPQYYKYFSIRKF-RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            +L   L    P+  +  S           + + N  +  +  +DG+KTG+T  +G+  +
Sbjct: 123 FLLSSKLISTHPEVLETTSKSSIITEEGATLESTNDSIGSIQGLDGLKTGFTDEAGYCFI 182

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            + +     ++++V+   T+++R +   +L+    ++
Sbjct: 183 GTAKRDGKRVISIVLDADTAKKRFKDTEKLMGIGFKE 219


>gi|33595888|ref|NP_883531.1| D-alanyl-D-alanine carboxypeptidase [Bordetella parapertussis
           12822]
 gi|33565967|emb|CAE36518.1| probable D-alanyl-D-alanine carboxypeptidase [Bordetella
           parapertussis]
          Length = 259

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 97/235 (41%), Gaps = 13/235 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ- 113
           + V D+  + +   K +   R  AS++K+MT  ++ +      L ++  I ++       
Sbjct: 20  AYVQDLETSTVLFAKNENVVRPIASISKLMTALVVVDA----NLPMDEMIEITDDDVDTL 75

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +   L+  T  +    +   +  S N  + A G    G    F   M+ KA+ +GM N
Sbjct: 76  KHTTSRLRVGTVLSRGDMLHLALMSSENRAAHALGRNYPGGMPAFVAAMNAKARSLGMLN 135

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF----RYRNRIITNHNK 229
           T +   +GL  +N +++ RD A +     +  P  ++Y +  ++      R +   N N 
Sbjct: 136 THFVEPTGLSSEN-VSSPRDLARMLRAASQR-PLIHRYSTDTEYEVEINNRTQTFRNTNL 193

Query: 230 LLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           L+ K   +I   KTG+   +G  +V   R     +  V++       R   A+ +
Sbjct: 194 LVRKPDWDIKVSKTGFINEAGECLVMLARINGRDMAIVLLDSQGKLSRIGDAVRI 248


>gi|118465675|ref|YP_882938.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium 104]
 gi|254776211|ref|ZP_05217727.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|118166962|gb|ABK67859.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium 104]
          Length = 298

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 96/257 (37%), Gaps = 23/257 (8%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
            +   P  + I+ D++  Q+   +       PAS  K +   ++ + +      L+  + 
Sbjct: 43  PIPDGPAQTWIIADLDSGQVLAGRDPNVAHPPASTIKTLLAQVVLDEV-----SLDATVV 97

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
                     + + +K    +T  Q + AL+  S ND +      + G E      M+ K
Sbjct: 98  ADAADTQVECNCVGIKPGRSYTARQLLDALLLVSGNDAANTLAHMLGGPEAT-VAKMNAK 156

Query: 166 AKKIGMQNTIYKNASGLHDKNQI--TTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           A  +G  NT     SGL   N    +TA D A++      N P + +  +     +    
Sbjct: 157 AAALGATNTHASTPSGLDGPNGSGSSTAHDLAVIFRAAMAN-PVFAQITAEPSAMFPGDN 215

Query: 222 --RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM------GMPTS 273
             + ITN ++LL +     G KTG+T  +    V +       +V  +M      G P+ 
Sbjct: 216 GLQPITNQDELLQRYPGAIGGKTGFTNAARKTFVGAAARGGRRLVIAMMYGLIKEGGPSY 275

Query: 274 QERDQKALELITSFLEK 290
            +   +A  L      +
Sbjct: 276 WD---QAATLFDWGFAQ 289


>gi|313498269|gb|ADR59635.1| PbpG [Pseudomonas putida BIRD-1]
          Length = 312

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 110/249 (44%), Gaps = 16/249 (6%)

Query: 55  SSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAAT 112
           S+++ID+N N+       D     AS+TK+MT  ++ +     KL ++  + ++      
Sbjct: 49  SALLIDLNSNKELYSSHADRVVPIASVTKLMTAMVVLDA----KLPMDEMLTMTIANNPE 104

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  ++  +     + +L  +  S N  + +      G    F   M+ KA+ +GM 
Sbjct: 105 MKGVYSRVRLGSQLDRRETLLITLMSSENRAANSLANAYPGGYPAFIKAMNAKARSLGMA 164

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRII--TN 226
           +T Y   +GL  +N ++TARD A L +  RK +P   +  + R+    FR  N  +   N
Sbjct: 165 HTRYVEPTGLSTQN-VSTARDLAKLLMASRK-YPMLSELSTTREKTVAFRKPNYTLGFRN 222

Query: 227 HNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            + L+NK   +I   KTG+T  +G  +V   R  + P+  V++           A   + 
Sbjct: 223 TDHLVNKSNWDIKLTKTGFTNEAGHCLVLLTRMDNRPVAMVILDAFGKYTHFADASR-MR 281

Query: 286 SFLEKKTLK 294
            +LE  T K
Sbjct: 282 QWLETGTAK 290


>gi|293607038|ref|ZP_06689381.1| penicillin-binding protein 7 [Achromobacter piechaudii ATCC 43553]
 gi|292814528|gb|EFF73666.1| penicillin-binding protein 7 [Achromobacter piechaudii ATCC 43553]
          Length = 399

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 99/245 (40%), Gaps = 13/245 (5%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +E  A    ++ V D+  + +   K +   R  AS++K+MT  ++ +      L ++  +
Sbjct: 144 AEAAALRSSTAYVQDLETSTVLFAKNENVVRPIASISKLMTAVVVVDA----NLPMDEML 199

Query: 105 PVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            ++         +   L+  T  +    +   +  S N  + A G    G    F   M+
Sbjct: 200 EITDDDVDGLKHTTSRLRVGTKLSRGDMLHLALMSSENRAANALGRHYPGGLPAFVAAMN 259

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF----RY 219
            KA+ +GM +T +   +GL   N +++  D A L     +  P  ++Y +  ++      
Sbjct: 260 AKAQSLGMTSTRFIEPTGLS-SNNVSSPHDLARLLRAASQR-PLIHRYSTDTEYDVEINN 317

Query: 220 RNRIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           R +   N N L+ K   +I   KTGY   +G  +V   R     +  V++       R  
Sbjct: 318 RTQTFRNTNLLVRKPDWDIKVSKTGYINEAGECLVMLARINGRDLAIVLLDSQGKLSRIG 377

Query: 279 KALEL 283
            A+ +
Sbjct: 378 DAVRI 382


>gi|239980721|ref|ZP_04703245.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces albus J1074]
          Length = 313

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/260 (24%), Positives = 102/260 (39%), Gaps = 26/260 (10%)

Query: 53  KYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT-- 109
              + ++D +  +    K  D  R  AS TK M + ++ +   +K ++L+ ++ V +T  
Sbjct: 44  AKGAFLMDASSGKTVFSKSADTKRQMASTTKTMAVAVVLD---TKGVNLDKKVTVKQTYR 100

Query: 110 --AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF------ISGSEKKFAIL 161
              A    S   L+     T  Q +   +  S  D + A  +       +S   K F   
Sbjct: 101 DYVAKNGASTADLRTGDKLTVRQLLYGTMLPSGCDAAYALADTFGSGSTVSARTKSFISK 160

Query: 162 MSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRKN--FPQYYKYFSIRKFR 218
           M+ KAK +GM NT + +  G+    N  +T RD A L     KN  F    K  S ++  
Sbjct: 161 MNAKAKSLGMTNTKFDSFDGISKAGNNYSTPRDLAKLARHAMKNSTFKTVVKAASTKQKA 220

Query: 219 Y------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
                  R     N NKLL       G KTG    +G  ++ S       +V V++    
Sbjct: 221 TAKGGGTRTYTWYNTNKLLGSYKGATGAKTGTGTAAGPCLIFSATKNGKSLVGVIL---N 277

Query: 273 SQERDQKALELITSFLEKKT 292
              R   A +++     KKT
Sbjct: 278 DSNRYADAGKMLDYGFGKKT 297


>gi|78044170|ref|YP_359992.1| D-alanyl-D-alanine carboxypeptidase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996285|gb|ABB15184.1| D-alanyl-D-alanine carboxypeptidase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 325

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 95/227 (41%), Gaps = 19/227 (8%)

Query: 62  NKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
             NQ+   K  D P  PAS TK+ T     +         N  + V   A     +K+YL
Sbjct: 34  TTNQIIEAKNQDFPLPPASTTKIATALTALDLYPR-----NFTLTVKPEAVRVTGTKIYL 88

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           K          +  L+  S ND + A    +   ++ F ++++   K++G+ +  +KN S
Sbjct: 89  KPNEKIAVIDLVYGLMLESGNDAANALAWVVG--KENFMLILNYYLKQMGLTSVSFKNPS 146

Query: 181 GLHDKNQITTARDQAILG-ILLRKNFPQYYKYFSIRKFR----YRNRIITNHNKLLNKMH 235
           GL       +A+D  +L    L K+  ++      +++     ++ R+  N N+LL    
Sbjct: 147 GLSAPGHKISAKDLCVLTFYALLKD--EFADICKTKQYEAQSGFKPRVFHNTNRLLAVDS 204

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + G+KTG T  +G  +V      +  ++  V+  P   +R     +
Sbjct: 205 RVIGVKTGTTNEAGKCLVG-AWRGNSFLIGTVLNCP---DRFTAVYK 247


>gi|222152529|ref|YP_002561704.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus uberis 0140J]
 gi|222113340|emb|CAR40938.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus uberis
           0140J]
          Length = 393

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 67/259 (25%), Positives = 114/259 (44%), Gaps = 31/259 (11%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           KPK SSIVID     +      +E R PAS++K+ TLY++FE L   KL L T I  +  
Sbjct: 47  KPK-SSIVIDAKNGDILWEDNINEHRDPASMSKLFTLYLLFEDLSKGKLSLETTITATDR 105

Query: 110 AATQNP----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK-KFAILMSN 164
               +     S   +     +  +  I      S+N  +     ++S ++   F   ++ 
Sbjct: 106 DQAISGIYEISNNKIISGVEYPIKDLIFMTAVPSSNAATVMIANYLSNNDASAFIDRINQ 165

Query: 165 KAKKIGMQNTIYKNAS--------GLHDKN-------QITTARDQAILGILLRKNFPQYY 209
           KA+++GM +T + NAS        GL++ +         T+A D AIL     K +P+  
Sbjct: 166 KARELGMHDTFFSNASGAAAEAFKGLYNPDKYDLSAPNQTSAHDLAILTYHFLKEYPEIV 225

Query: 210 KYFSIR-----KFRYRNRIITNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
            Y + R              T +N  L      M  +DG+KTG + +  FN + + +   
Sbjct: 226 TYTNQRIVKTMVGTPYEEEFTTYNYSLPGDRYGMTGVDGLKTGSSPSGAFNAIVTTKRNQ 285

Query: 261 DPIVAVVMGMPTSQERDQK 279
             ++ +VMG+    ++D +
Sbjct: 286 KRLITIVMGVGDWSDQDGE 304


>gi|221124426|ref|XP_002164451.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 257

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 100/235 (42%), Gaps = 11/235 (4%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-P 115
           ++D +  ++   K +    P AS+TK+MT  ++ E     +L ++  I +++        
Sbjct: 1   MVDQDTKEVLFSKNENAVLPIASITKLMTGVVVSEA----RLSMDETIEITQADVDTEKG 56

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S   L+  T  +  + +   +  S N  + A G    G  + F  LM+ KA+ +GM +T 
Sbjct: 57  SSSRLRVGTELSRGELLHLALMASENRAAHALGRTFPGGLQHFVGLMNQKARILGMTDTQ 116

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFP-QYYKYFSIRKFRYRNRII--TNHNKLL- 231
           Y   +GL+ +NQ ++A+D A L      +   +     +  +    NR +   N N+L+ 
Sbjct: 117 YVEPTGLNSRNQ-SSAKDLATLVNYAYSDATLRELSTSTGYQVEVGNRTLQYNNTNRLVK 175

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           N    I   KTGY   +G  +V   +     ++ V +       R   A  +   
Sbjct: 176 NPAWEIGLQKTGYITEAGQCLVMQAKIAGRKLIMVFLDSAGKLTRIADAERVRKW 230


>gi|70731349|ref|YP_261090.1| D-alanyl-D-alanine endopeptidase [Pseudomonas fluorescens Pf-5]
 gi|68345648|gb|AAY93254.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas fluorescens Pf-5]
          Length = 312

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 65/285 (22%), Positives = 122/285 (42%), Gaps = 29/285 (10%)

Query: 24  IQRNIQLMGKILFLSIIMISM---ASELHAKPK---------YSSIVIDVNKNQMTGFKQ 71
           ++  + ++  +  +S  +I+    ASE  A P+          S++++D+  N++     
Sbjct: 1   MKIRLSILSLLFAVSGTLIAHSVDASETTAAPRDTSQLHIASGSALLLDLQTNKVIYSSN 60

Query: 72  DEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP--VSKTAATQNPSKLYLKEKTYFTT 128
            +   P AS+TK+MT  ++ +     KL L+  I   +S T          +K  +  + 
Sbjct: 61  PDVIVPIASVTKLMTAMVVLDA----KLPLDEYISMNISDTP-EMKGVFSRVKLNSELSR 115

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
              +L  +  S N  + +      G    F   M+ KAK +GM +T Y   +GL   N +
Sbjct: 116 RDTLLIALMSSENRAAASLAHHYPGGYAAFIAAMNAKAKSLGMTHTRYVEPTGLSIHN-V 174

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRII--TNHNKLLNKM-HNIDGIK 241
           +TARD + L +  RK +P   +  + ++    FR  N  +   N + L+NK   +I   K
Sbjct: 175 STARDLSKLLVASRK-YPLLSELSTTKEKTVAFRKPNYTLGFRNTDHLVNKEKWDIKITK 233

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           TG+T  +G  +V      + P+  V++           A  +   
Sbjct: 234 TGFTNQAGHCLVLVTSMGNRPVALVILDAFGKYTHFADASRIRNW 278


>gi|322386843|ref|ZP_08060467.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus cristatus
           ATCC 51100]
 gi|321269125|gb|EFX52061.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus cristatus
           ATCC 51100]
          Length = 425

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 66/325 (20%), Positives = 128/325 (39%), Gaps = 45/325 (13%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
              S+I +D N  ++   K+   P    ++T ++T Y+++E + + KL L T++ +S  A
Sbjct: 27  AAKSAIAVDANSGKILYEKEATSPLEVGAITNILTAYLVYEAIANGKLSLETEVDISDYA 86

Query: 111 A--TQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
              T NPS   L L+ +  +  +  + A +  SAN  + A  E + GSE+ F  +M  K 
Sbjct: 87  YQLTVNPSIANLPLEAR-RYKVKDLLNASLLASANSATIALAEKVGGSEENFVKMMKAKL 145

Query: 167 KKIGMQNTIYKNASGLH-----------------DKN----------QITTARDQAILGI 199
           K+  + +    NA+G                    +N             +A D A++  
Sbjct: 146 KEWNISDATIVNATGTDIRLLDGSLETTNTEEEAAENSKSKKKQETVNKFSAYDIAVIAS 205

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIKTGYTRNSGFNIVTS 255
            L  ++P+     S     +    + N N +L         + G+KTG +  SG + V  
Sbjct: 206 HLIDDYPEVLGITSKSHVNFAGIQLENPNLMLEGSPSFRTGVKGLKTGGSEQSGVSFVGV 265

Query: 256 LRYKDDPIVAVVMGM----PTSQERDQKALELIT----SFLEKKTLKHQQTHRKDNLSST 307
              K   ++ VV+G+         R      L+T    +F     +K  + +    ++  
Sbjct: 266 TSEKGMRLITVVLGVAQEDNDPNTRFGVTSSLMTYVTQNFSPTVLVKKGERYNNSQVAVR 325

Query: 308 SLKKSLMIKKLKRTYSQFKKIDAKA 332
             ++  +           ++I  +A
Sbjct: 326 DSQEDKVAAVASEDLVILERIANQA 350


>gi|282934688|ref|ZP_06339931.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
           208-1]
 gi|281301263|gb|EFA93564.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
           208-1]
          Length = 395

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/341 (21%), Positives = 139/341 (40%), Gaps = 38/341 (11%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPK----YSSIVIDVNKNQMTGFKQDEPRY-PAS 79
           +  I  +  +  + II ++  + + A  K     ++ ++D    Q+   K    +Y  AS
Sbjct: 7   KLKIAWLVALCIIGIINLTFFNVVKADEKPVNVKAAFMMDEKTGQILYQKNATRKYAVAS 66

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN----PSKLYLKEKTYFTTEQGILAL 135
           LTK++TL +I E +   KL  + +I +SK  A        S + L     +T    I ++
Sbjct: 67  LTKILTLAVIMEDIHKHKLDWDQEIQISKDVAKVADDWRFSNVPLIYNERYTVRSLIESM 126

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------------- 182
           +  SA+  + A     +GS   F   M   AK+ G++N    N  GL             
Sbjct: 127 MIVSADGSTEALALADAGSVAAFNYKMKVVAKRAGVKNPEIYNMIGLSNGELGNLKLPKI 186

Query: 183 -HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLLNKMHN 236
             ++    +A+D A++   L   +P+       +   +         + N   +L  M  
Sbjct: 187 DDNQENQFSAKDMALISKYLIDKYPEVLNITKTKYANFKISQDNEIKMENIIYMLEGMGY 246

Query: 237 ------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS-QERDQKALELITSFLE 289
                 +DG+KTG T  +G+  V +  + +  ++ VV+ +P     +  +   +I +  +
Sbjct: 247 GPKKGTMDGLKTGKTDAAGYCYVGTGTFDNRRVITVVLDVPGEYSNQFIQTNNMIDTVFD 306

Query: 290 KKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
           K  L       K+NL     K ++  KK K+  S   + D+
Sbjct: 307 KYQLVK---INKNNLPKKYQKITITSKKQKKKISVVPETDS 344


>gi|317509103|ref|ZP_07966732.1| D-alanyl-D-alanine carboxypeptidase [Segniliparus rugosus ATCC
           BAA-974]
 gi|316252632|gb|EFV12073.1| D-alanyl-D-alanine carboxypeptidase [Segniliparus rugosus ATCC
           BAA-974]
          Length = 303

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 97/254 (38%), Gaps = 18/254 (7%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           + +L   P  + +V D++  ++   K       PAS  K +    + +        L++ 
Sbjct: 47  SPDLPDGPADAWLVADMDSGEILAAKNPYAYHPPASTIKTLLALTVIDEA-----PLDSA 101

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           +  +K       S + +K    +T  Q + AL+  S ND +    E + G +      M+
Sbjct: 102 VTATKDDLA-ECSCVGIKPGHDYTIRQLLDALLLVSGNDAANTLAESLGGFDSA-VAKMN 159

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQ--ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
            KA++IG  +T   + SGL        TT  D A++      N P + +  +     +  
Sbjct: 160 AKAQEIGATDTHTGSPSGLDWPGMEMHTTPHDLAVIFREAL-NRPLFAEITAEPSAMFPG 218

Query: 222 ----RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM---GMPTSQ 274
                 I N ++LL+      G KTG+T  +    V +       +V  +M     P + 
Sbjct: 219 DGGENEIHNQDELLSLYPGALGGKTGFTNAAKKTFVGAAERDGRRLVVAMMYGLNTPGNP 278

Query: 275 ERDQKALELITSFL 288
               +A  L+    
Sbjct: 279 TYWDQAQALLDWGF 292


>gi|167033128|ref|YP_001668359.1| D-alanyl-D-alanine endopeptidase [Pseudomonas putida GB-1]
 gi|166859616|gb|ABY98023.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pseudomonas
           putida GB-1]
          Length = 308

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 105/241 (43%), Gaps = 15/241 (6%)

Query: 55  SSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAAT 112
           S+++ID+N NQ       D     AS+TK+MT  ++ +     KL ++  + ++      
Sbjct: 45  SALLIDLNSNQELYSSHADRVVPIASVTKLMTAMVVLDA----KLPMDEMLTMTIANNPE 100

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  ++  +     + +L  +  S N  + +      G    F   M+ KA+ +GM 
Sbjct: 101 MKGVYSRVRLGSQLDRRETLLITLMSSENRAANSLANAYPGGYPAFIKAMNAKARSLGMA 160

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRII--TN 226
           +T Y   +GL  +N ++TARD A L +  RK +P   +  + R+    FR  N  +   N
Sbjct: 161 HTRYVEPTGLSTQN-VSTARDLAKLLMASRK-YPMLSELSTTREKTVAFRKPNYTLGFRN 218

Query: 227 HNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            + L+NK   +I   KTG+T  +G  +V   R  + P+  V++           A  +  
Sbjct: 219 TDHLVNKSNWDIKLTKTGFTNEAGHCLVLLTRMDNRPVAMVILDAFGKYTHFADASRMRQ 278

Query: 286 S 286
            
Sbjct: 279 W 279


>gi|82408083|pdb|2BCF|A Chain A, Crystal Structure Of A Evolved Putative Penicillin-Binding
           Protein Homolog, Rv2911, From Mycobacterium Tuberculosis
          Length = 276

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 92/255 (36%), Gaps = 23/255 (9%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
            +   P  + IV D++  Q+   + Q+    PAS  K++   +  + L      LN+ + 
Sbjct: 13  PIPDGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELD-----LNSTVV 67

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
                     + + +K    +T  Q +  L+  S ND +      + G +       + K
Sbjct: 68  ADVADTQAECNCVGVKPGRSYTVRQLLDGLLLVSGNDAANTLAHXLGGQDVT-VAKXNAK 126

Query: 166 AKKIGMQNTIYKNASGLHDKNQI--TTARDQAILGILLRKNFPQYYKYFSIRKFRY---- 219
           A  +G  +T     SGL        +TA D  ++      N P + +  +     +    
Sbjct: 127 AATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAXAN-PVFAQIIAEPSAXFPSDD 185

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM------GMPTS 273
             ++I N ++LL +     G KTGYT  +    V +       +V          G PT 
Sbjct: 186 GEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAXXYGLVKEGGPTY 245

Query: 274 QERDQKALELITSFL 288
            +   +A  L     
Sbjct: 246 WD---QAATLFDWGF 257


>gi|167581319|ref|ZP_02374193.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis TXDOH]
 gi|257138600|ref|ZP_05586862.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis E264]
          Length = 364

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 97/238 (40%), Gaps = 13/238 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + V+D N  +    K      P AS+TK+MT  ++ +     K  L  QI V+       
Sbjct: 114 AYVVDQNTAEPLFDKNSRAVVPIASITKLMTAMVVLDS----KAPLTEQIDVTDEDRDYE 169

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +   L   +  + E  +   +  S N  + A   +  G    F   M+ KAK +GM +
Sbjct: 170 KGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMNAKAKSLGMND 229

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI----ITNHNK 229
           T ++N++GL  +N +++ARD   +     + +P   K+ + R +            + N 
Sbjct: 230 THFENSTGLSSQN-VSSARDLVKMVNAAYQ-YPLIRKFSTDRSYEVNTGKRMLAYNSTNA 287

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L+ N   +I   KTG+   +G  +V        PIV V++       R   A  +   
Sbjct: 288 LVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRPIVMVLLDSFGKYSRFADASRVRNW 345


>gi|113867401|ref|YP_725890.1| D-alanyl-D-alanine carboxypeptidase [Ralstonia eutropha H16]
 gi|113526177|emb|CAJ92522.1| D-Alanyl-D-alanine carboxypeptidase [Ralstonia eutropha H16]
          Length = 380

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 103/238 (43%), Gaps = 13/238 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++V+D N N++   K      P AS+TK+MT  ++ +     +L ++  + +S+      
Sbjct: 110 ALVMDQNSNEVLFQKNASAVLPIASITKLMTALVVMDA----RLPMDEVLTISEEDRDTE 165

Query: 115 P-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   L+  T  T ++ +L  +  S N  ++A G    G    F   M+ KA+++GM +
Sbjct: 166 KHSGSRLRFGTQLTRQELLLLALMSSENRAASALGRNYPGGLPAFVQAMNRKARELGMND 225

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR--NRIIT--NHNK 229
           + + ++S     + +++A D   +     +N P   ++ +  +       R     + N+
Sbjct: 226 SHFVDSS-GLSSSNVSSATDLVRMVNAAYRN-PTIREFSTQTEHEVNVLGRTQHYVSTNR 283

Query: 230 LLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L+   +   G+ KTG+   +G  +V   + +   +V V +       R   A  +   
Sbjct: 284 LVRGGNWEIGLQKTGFISEAGQCLVMQAKVQGRNVVMVFLDSAGKLSRFADANRVKDW 341


>gi|312869422|ref|ZP_07729583.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus oris
           PB013-T2-3]
 gi|311095085|gb|EFQ53368.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus oris
           PB013-T2-3]
          Length = 407

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 64/303 (21%), Positives = 137/303 (45%), Gaps = 32/303 (10%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASL 80
           + I+R ++L+  +  +   + + A         ++++ID +  Q+   +    + P AS+
Sbjct: 1   MKIKRVLRLVMVLPLVLAELTTGALASERVNARAAVMIDASTGQVLYEQNANQKLPVASI 60

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKT--AATQNP--SKLYLKEKTYFTTEQGILALI 136
           +K++T+ ++ + L+ + +  NT++ VS    A   +P  S + ++E   +T  + + A +
Sbjct: 61  SKLLTVAVVHDELKQRIITANTRVNVSADVAAIASDPAYSAIGVQEGQSYTVRELLNAAM 120

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN---------- 186
            +SA+  + A  E    + ++F + M  KAK+IG++N    N  GL + +          
Sbjct: 121 VKSADGATLALAEADGSNLEEFNLKMDQKAKEIGLKNYTIVNPVGLTNGDLKGLKLEQYA 180

Query: 187 ----QITTARDQAILGILLRKNFPQYYKYFSIRKFRY---RNRIIT--NHNKLLNKMHN- 236
                  TA D A+L   L + +P   +  + +   +   +++ +   N NK+L      
Sbjct: 181 NNAENAMTANDVALLARYLVQTYPDLLQVTAQKDADFYIAKDKTVKADNLNKMLPGEQYA 240

Query: 237 -----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM--GMPTSQERDQKALELITSFLE 289
                IDG+KTG +  +G + V++  Y+   ++ VV+         R     +L      
Sbjct: 241 VPGVKIDGLKTGTSAAAGPSFVSTGVYRGHRVITVVLHANGDGGDARFAATRQLYNQLKG 300

Query: 290 KKT 292
            KT
Sbjct: 301 MKT 303


>gi|260899160|ref|ZP_05907555.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus AQ4037]
 gi|308110607|gb|EFO48147.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus AQ4037]
          Length = 181

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 7/159 (4%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           F S +++  A ++ AK     +++D +  ++   K+ +    PASLTKMMT Y+I + L 
Sbjct: 26  FASPVVVPDAPQIAAK---GYVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELA 82

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
              +  +  + +SK A  +N    SK++++  T          +I +S ND   A  E I
Sbjct: 83  RGNISEDDDVTISKNAWAKNFPDSSKMFIEVGTTVKVRDLNRGIIIQSGNDACVAMAEHI 142

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
           +GSE  F  LM+  A  +GM+N+ + N  GL +    +T
Sbjct: 143 AGSEDAFVDLMNAWANTLGMKNSHFANVHGLDNSELYST 181


>gi|253687929|ref|YP_003017119.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251754507|gb|ACT12583.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 315

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 114/286 (39%), Gaps = 30/286 (10%)

Query: 24  IQRNIQL-MGKILFLSIIMISMASELHAKPKYSS------------IVIDVNKNQMTGFK 70
           + +N +L +  +L LS   + +   +   P YS+            +V+D+  N +    
Sbjct: 1   MTKNFKLSLCGLLMLSTHAVMLPQAMAKAPTYSAGTAHQEIASGSAMVVDLRDNHILYSS 60

Query: 71  QDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQNPSKLYLKEKTYFT 127
             +   P AS+TK+MT  ++ +  Q     L+    + +S+T          ++  +  +
Sbjct: 61  NPDVVVPIASVTKLMTALVVLDANQP----LDEIISVDISQT-KEMKGVYSRVRLNSEIS 115

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
               +L  +  S N  + +      G  + F   M+ KA+ +GM +T Y   +GL   N 
Sbjct: 116 RRDMLLLALMSSENRAAASLAHHYPGGYQAFIRAMNAKARALGMAHTRYVEPTGLSI-NN 174

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------NRIITNHNKLLNK-MHNIDGI 240
           ++TARD   L ++  K +P   +  + ++          +    N N L+ K   +I   
Sbjct: 175 VSTARDLTKL-LIASKQYPLLSQLSTTQEKTATFSHPAYSLPFRNTNHLVYKADWSIQLT 233

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           KTG+T  +G  +V        P+  VV+           A  L   
Sbjct: 234 KTGFTNQAGHCLVMRTVINQRPVALVVLDAFGKYTHFADANRLRKW 279


>gi|169630315|ref|YP_001703964.1| D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium abscessus
           ATCC 19977]
 gi|169242282|emb|CAM63310.1| Probable D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium
           abscessus]
          Length = 287

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 105/272 (38%), Gaps = 24/272 (8%)

Query: 31  MGKILFLSIIMIS-----MASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMM 84
           +  +LFLS + +      MA+     P  + +V D++  Q+   +       PAS  K++
Sbjct: 15  VLSVLFLSTLPVGVARADMAAPPPEGPAQAWLVADLDSGQILAARDPYATHAPASTIKVL 74

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
              +  + +      ++  +      A    + + +K    +T  + + A +  S ND +
Sbjct: 75  LALVALDEV-----PMDATVVADAADAKAECNCVGIKAGQTYTARELLDAALLESGNDAA 129

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK--NQITTARDQAILGILLR 202
                 + G  +     M+ KA  +G  +T   + SGL     +  T+  D A++     
Sbjct: 130 NTLA-HLLGGRQATVDKMNAKAAALGATSTHTDSPSGLDAPGMDMRTSPHDLAVIFRAAL 188

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
            N P + +  +     +  R + N N+L+ +   + G KTG+T  +    V +       
Sbjct: 189 AN-PVFAEITAQPSAPFPGRGLHNQNELMYRYPGVIGGKTGFTDIARKTYVVAAERDGKR 247

Query: 263 IVAVVM------GMPTSQERDQKALELITSFL 288
           +V  +M      G PT  +   +A  L     
Sbjct: 248 LVVSMMYGLVHEGGPTYWD---QAASLFDWGF 276


>gi|159038233|ref|YP_001537486.1| Serine-type D-Ala-D-Ala carboxypeptidase [Salinispora arenicola
           CNS-205]
 gi|157917068|gb|ABV98495.1| Serine-type D-Ala-D-Ala carboxypeptidase [Salinispora arenicola
           CNS-205]
          Length = 416

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 95/271 (35%), Gaps = 20/271 (7%)

Query: 32  GKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIF 90
             +    ++  +   +       S +V D++  Q+ G         PAS+ K++      
Sbjct: 68  SALATAGLVTPAGGPQPPGVTATSWLVADLDTGQVLGACGPHEHGTPASVQKLL-----L 122

Query: 91  EYLQSKKLHLNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
                 +L     + V+K      +  S + L     +  E   L L+ +S N+ +    
Sbjct: 123 AAALMPRLDPQQVVTVTKEDLDIERGSSAVGLLAGGRYPVETVWLGLLLQSGNEAANVLA 182

Query: 149 E--FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
                +         M+  A+ +G + T     SGL    Q T+A D A++  +   + P
Sbjct: 183 RLGGGAEGRAGGVRAMNEFAEYLGARQTHAATPSGLDGPGQFTSAYDLALIARVCFAD-P 241

Query: 207 QYYKYFSIRKFRY--------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
            + +Y      R         +   I N N L+ +     G KTG+T  +    V +   
Sbjct: 242 TFRRYALTETHRIPAQEQLGKKGFQIQNGNPLVGRYPGALGGKTGFTSLARHTYVGAAER 301

Query: 259 KDDPIVAVVMGMPTSQER-DQKALELITSFL 288
               +V  ++G  +   R  ++   L+    
Sbjct: 302 DGRRLVVTLLGAESRPMRGWEQGAVLLDWGF 332


>gi|332522835|ref|ZP_08399087.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314099|gb|EGJ27084.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 412

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/335 (21%), Positives = 146/335 (43%), Gaps = 33/335 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTK 82
           +++ + L+  +LF  +  +++A E +  P  S I  +V+  ++   K  + + P ASL+K
Sbjct: 1   MKKLVLLILPLLFYFLPKVTLA-EAYKLPARSGIAFEVSTGKILYEKDAKKKLPIASLSK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T Y++++ +QS  L  +T + +S       A  + S + L  +  +T E+ + A++  
Sbjct: 60  VLTTYLVYKEVQSGNLSWDTPVKISNYPYELTANYSISNVPLDAR-QYTVEELLTAMLVT 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------D 184
           +AN  + A  E ISG+E  F   M  + +   +      NASGL               D
Sbjct: 119 NANSPAIALAEKISGTEPLFVDKMQKQLRDWKIHKANLVNASGLSNEQLGNHIYPNSQKD 178

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGI 240
                +A D AI+   L ++FPQ  +        +R   I ++N LL  M       +G+
Sbjct: 179 AENKMSALDLAIVTRHLLQDFPQVLELTKKPAATFRGDRIFSYNFLLEGMPNHRIGANGL 238

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE----RDQKALELITSFLEKK----T 292
              ++ N+G +++TS       +V++++     ++        A  L+ +  +K      
Sbjct: 239 FVAFSENNGASLITSSIENKMSVVSIILNTEEVKDNKLAHFTTANTLLDNIAQKYEPVTL 298

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
           L+  Q  +   L         +     +T +  +K
Sbjct: 299 LRKGQILKNKTLPVIDSPIKQVSLTSDKTLTVIQK 333


>gi|256851221|ref|ZP_05556610.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           jensenii 27-2-CHN]
 gi|260660645|ref|ZP_05861560.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           jensenii 115-3-CHN]
 gi|297206087|ref|ZP_06923482.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           jensenii JV-V16]
 gi|256616283|gb|EEU21471.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           jensenii 27-2-CHN]
 gi|260548367|gb|EEX24342.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           jensenii 115-3-CHN]
 gi|297149213|gb|EFH29511.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           jensenii JV-V16]
          Length = 397

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/341 (21%), Positives = 139/341 (40%), Gaps = 38/341 (11%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPK----YSSIVIDVNKNQMTGFKQDEPRY-PAS 79
           +  I  +  +  + II ++  + + A  K     ++ ++D    Q+   K    +Y  AS
Sbjct: 9   KLKIAWLVALCIIGIINLTFFNVVKADEKPVNVKAAFMMDEKTGQILYQKNATRKYAVAS 68

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN----PSKLYLKEKTYFTTEQGILAL 135
           LTK++TL +I E +   KL  + +I +SK  A        S + L     +T    I ++
Sbjct: 69  LTKILTLAVIMEDIHKHKLDWDQEIQISKDVAKVADDWRFSNVPLIYNERYTVRSLIESM 128

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------------- 182
           +  SA+  + A     +GS   F   M   AK+ G++N    N  GL             
Sbjct: 129 MIVSADGSTEALALADAGSVAAFNYKMKVVAKRAGVKNPEIYNMIGLSNGELGNLKLPKI 188

Query: 183 -HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLLNKMHN 236
             ++    +A+D A++   L   +P+       +   +         + N   +L  M  
Sbjct: 189 DDNQENQFSAKDMALISKYLIDKYPEVLNITKTKYANFKISQDNEIKMENIIYMLEGMGY 248

Query: 237 ------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS-QERDQKALELITSFLE 289
                 +DG+KTG T  +G+  V +  + +  ++ VV+ +P     +  +   +I +  +
Sbjct: 249 GPKKGTMDGLKTGKTDAAGYCYVGTGTFDNRRVITVVLDVPGEYSNQFIQTNNMIDTVFD 308

Query: 290 KKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
           K  L       K+NL     K ++  KK K+  S   + D+
Sbjct: 309 KYQLVK---INKNNLPKKYQKITITSKKQKKKISVVPETDS 346


>gi|189219530|ref|YP_001940171.1| D-alanyl-D-alanine carboxypeptidase [Methylacidiphilum infernorum
           V4]
 gi|189186388|gb|ACD83573.1| D-alanyl-D-alanine carboxypeptidase [Methylacidiphilum infernorum
           V4]
          Length = 279

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 58/251 (23%), Positives = 101/251 (40%), Gaps = 31/251 (12%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             +++V D ++ +    +  D P YPAS TK+MT  I +E     K  L   + +     
Sbjct: 40  ARAALVWDSDQKKDLFSRDADSPYYPASTTKVMTALIAYE-----KTKLEGTVSI----- 89

Query: 112 TQNPSKLYLK--------EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
              PS L L             ++ +  + AL+  S+N+ + A      G+   F   M+
Sbjct: 90  --QPSDLGLTEYPVVRFFPGEKYSVKSLVYALLLPSSNEAAMALARQSCGTVMSFVDEMN 147

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
            KAK +G  +T ++N  G+     +T+A D   +        P   K  S   +      
Sbjct: 148 KKAKSLGCNHTHFQNPHGISYPGHMTSANDLRKIFEAFL-AVPDLVKIISSPSYELATLD 206

Query: 222 ----RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
               + + N NKLL+    +   KTG+T  S    V   + +   ++ V++  P      
Sbjct: 207 GKPVQYLMNTNKLLDLYQGMTAGKTGWTPESRNTFVGMFQRQGKKLIVVILDSPNKWL-- 264

Query: 278 QKALELITSFL 288
             AL L+  F+
Sbjct: 265 -DALILLHPFM 274


>gi|291452581|ref|ZP_06591971.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces albus J1074]
 gi|291355530|gb|EFE82432.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces albus J1074]
          Length = 292

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 63/260 (24%), Positives = 102/260 (39%), Gaps = 26/260 (10%)

Query: 53  KYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT-- 109
              + ++D +  +    K  D  R  AS TK M + ++ +   +K ++L+ ++ V +T  
Sbjct: 23  AKGAFLMDASSGKTVFSKSADTKRQMASTTKTMAVAVVLD---TKGVNLDKKVTVKQTYR 79

Query: 110 --AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE------FISGSEKKFAIL 161
              A    S   L+     T  Q +   +  S  D + A  +       +S   K F   
Sbjct: 80  DYVAKNGASTADLRTGDKLTVRQLLYGTMLPSGCDAAYALADTFGSGSTVSARTKSFISK 139

Query: 162 MSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRKN--FPQYYKYFSIRKFR 218
           M+ KAK +GM NT + +  G+    N  +T RD A L     KN  F    K  S ++  
Sbjct: 140 MNAKAKSLGMTNTKFDSFDGISKAGNNYSTPRDLAKLARHAMKNSTFKTVVKAASTKQKA 199

Query: 219 ------YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
                  R     N NKLL       G KTG    +G  ++ S       +V V++    
Sbjct: 200 TAKGGGTRTYTWYNTNKLLGSYKGATGAKTGTGTAAGPCLIFSATKNGKSLVGVIL---N 256

Query: 273 SQERDQKALELITSFLEKKT 292
              R   A +++     KKT
Sbjct: 257 DSNRYADAGKMLDYGFGKKT 276


>gi|148547200|ref|YP_001267302.1| D-alanyl-D-alanine endopeptidase [Pseudomonas putida F1]
 gi|148511258|gb|ABQ78118.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Pseudomonas
           putida F1]
          Length = 308

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 105/241 (43%), Gaps = 15/241 (6%)

Query: 55  SSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAAT 112
           S+++ID+N NQ       D     AS+TK+MT  ++ +     KL ++  + ++      
Sbjct: 45  SALLIDLNSNQELYSSHADRVVPIASVTKLMTAMVVLDA----KLPMDEMLTMTIANNPE 100

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  ++  +     + +L  +  S N  + +      G    F   M+ KA+ +GM 
Sbjct: 101 MKGVYSRVRLGSQLDRRETLLITLMSSENRAANSLANAYPGGYPAFIKAMNAKARSLGMA 160

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRII--TN 226
           +T Y   +GL  +N ++TARD A L +  RK +P   +  + R+    FR  N  +   N
Sbjct: 161 HTRYVEPTGLSTQN-VSTARDLAKLLMASRK-YPMLSELSTTREKTVAFRKPNYTLGFRN 218

Query: 227 HNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            + L+NK   +I   KTG+T  +G  +V   R  + P+  V++           A  +  
Sbjct: 219 TDHLVNKSNWDIKLTKTGFTNEAGHCLVLLTRMDNRPVAMVILDAFGKYTHFADASRMRQ 278

Query: 286 S 286
            
Sbjct: 279 W 279


>gi|256827158|ref|YP_003151117.1| D-alanyl-D-alanine carboxypeptidase [Cryptobacterium curtum DSM
           15641]
 gi|256583301|gb|ACU94435.1| D-alanyl-D-alanine carboxypeptidase [Cryptobacterium curtum DSM
           15641]
          Length = 475

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/345 (20%), Positives = 136/345 (39%), Gaps = 40/345 (11%)

Query: 15  LTYPYGSIY-IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-D 72
           L +P G++  ++++  ++G+ +    + +S    + A+    +IV+  +       +  D
Sbjct: 35  LVFPTGALADVRKSDIVIGQTVSARSLALSRCPNIDAEH---AIVVGSD-GTTYFERDAD 90

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
              + AS+TK+MT     + +      L+T I VS  AA    S   L+E       + +
Sbjct: 91  TRVHIASITKVMTAVTAIDSV-----PLDTTITVSSQAARIGESTAALQEGDTMPLSEAL 145

Query: 133 LALITRSANDVSTAFGEFISG---------------SEKKFAILMSNKAKKIGMQNTIYK 177
            AL+  S ND + A  E I G                 + F   M+ K+  +GM ++I+ 
Sbjct: 146 KALLWPSGNDAAWAIAESIGGMMLTSSNKDASDSSACVQAFVDAMNAKSADLGMNDSIWS 205

Query: 178 NASGLHDK----NQITTARDQAILGILLRKNFPQYYKYFSI-----RKFRYRNRI---IT 225
           N  GL D     +  +TARD + L               S      +  R   ++   + 
Sbjct: 206 NPHGLDDGSWSGDFGSTARDISKLIEYAMSK-DAIRSITSTDGGTCKVLRNGEQVSLSLD 264

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           + ++LL       G+KTG+T ++G     ++   D  + +VV+   + ++R      L  
Sbjct: 265 STDELLGSYEGTIGVKTGFTDSAGECFAGAVETSDITLYSVVLDSTSEKQRFTDTRTLWD 324

Query: 286 SFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
                + + +   H ++     S     +   +       K +DA
Sbjct: 325 WVFNHR-INYSLAHTENTTVDASGTTVPLAASVALGAWTDKTVDA 368


>gi|20977191|gb|AAM33319.1|AF503595_3 hypothetical protein [Erwinia chrysanthemi]
          Length = 316

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 56/279 (20%), Positives = 113/279 (40%), Gaps = 33/279 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAA 111
           S++V+D+  N++      +   P AS+TK+MT  ++ +  Q     L+ +  + +S+T  
Sbjct: 45  SAMVVDLRNNEVLYSANPDVVVPIASVTKLMTAMVVLDANQP----LDERISVDISQT-K 99

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   ++  +  +    +L  +  S N  + +      G  + F   M+ KA+  G 
Sbjct: 100 EMKGVYSRVRLGSEISRHDMLLLALMSSENRAAASLAHHYRGGYQAFIAAMNAKARA-GH 158

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT-- 225
            +T Y   +GL   N ++TARD   L ++  + +P   +  + ++    F   +  +   
Sbjct: 159 THTRYVEPTGLSTSN-VSTARDLTKL-LIASRQYPLLSQLSTTQEKNAVFTQPSYSLPFR 216

Query: 226 NHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ +   NI   KTG+T  +G  +V        P+  VV+           A  L 
Sbjct: 217 NTNHLIYRQDWNIQLTKTGFTNQAGHCLVMRTVINGRPVSLVVLDAFGKFTHFADANRLR 276

Query: 285 TS---------------FLEKKTLKHQQTHRKDNLSSTS 308
                            + ++K++  +Q H  D  ++  
Sbjct: 277 NWLETGKVSPVPEAALSYKKQKSVASRQPHGADVTAAVD 315


>gi|169828716|ref|YP_001698874.1| penicillin-binding protein dacF [Lysinibacillus sphaericus C3-41]
 gi|168993204|gb|ACA40744.1| Penicillin-binding protein dacF precursor (D-alanyl-D-alanine
           carboxypeptidase) [Lysinibacillus sphaericus C3-41]
          Length = 266

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 100/221 (45%), Gaps = 13/221 (5%)

Query: 64  NQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI---PVSKTAATQNPSKLY 119
            ++   K  D   YPASLTK+MT  +  E      L + T +    ++K  A QN S   
Sbjct: 34  GEVLFEKNADAIIYPASLTKIMTAIVAIEMTDD--LQMQTIVKPQTIAKYTA-QNASMAG 90

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
                + T E  +   +  S  D S    E I+GSE +F   M+NKA+++GM  T + N 
Sbjct: 91  FHAGDFVTIEDLLYGTLLASGADASGTLAEAIAGSEDEFVTYMNNKAQELGMDTTHFVNT 150

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-NRIITNHNKLLNKMHNID 238
           SGLH++  +++ +D + L     +N P +Y+ F+ + +       +   N L  +M  +D
Sbjct: 151 SGLHEEAHVSSLQDISKLLRYALEN-PTFYRIFTSKTYTTHVPTALLISNSLFTRMPGMD 209

Query: 239 ----GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
               G KTGYT  +G  + + +       + +    P    
Sbjct: 210 GTILGGKTGYTPEAGLCLASLMEKDGRKFLFITTNAPGYAW 250


>gi|27466953|ref|NP_763590.1| penicillin binding protein 4 [Staphylococcus epidermidis ATCC
           12228]
 gi|27314495|gb|AAO03632.1|AE016744_35 penicillin binding protein 4 [Staphylococcus epidermidis ATCC
           12228]
          Length = 407

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 124/298 (41%), Gaps = 26/298 (8%)

Query: 58  VIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--- 113
           V+     Q+   + +D+   PAS TK+MT+ +I++ +   K+ L  ++ +S+        
Sbjct: 41  VVTTTNGQILYKYHKDKKVDPASTTKLMTMLVIYDDINHSKVSLKDKVKISERYQKMSQL 100

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
            N +   LK+   +T EQ +      S+N  +    E I G   KF   M+ +A+ +GM 
Sbjct: 101 PNLTTFPLKKGQTYTIEQLLKQAALNSSNAATLVLAEHIDGDISKFTDRMNREAQLLGMN 160

Query: 173 NTIYKNASGLHDK--------------NQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
            T + N SG ++K              +  TTA D AIL   L + +P   K   +    
Sbjct: 161 QTHFTNPSGANNKIIKPYEPKKYKDETSSYTTANDMAILTNHLLRKYPNILKMTQLETDT 220

Query: 219 YRNRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG-MPTS 273
             N+ + N N  L      M N+DG+KTG T   G+N+  + +     +   +    P  
Sbjct: 221 QYNQQLHNTNLSLPHQSLGMKNVDGLKTG-TSKEGYNLALTAKKDQLRVNTNLFNIQPYP 279

Query: 274 QERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
            E+ + A   + + L +   K+  T+RK                 +  Y    K ++K
Sbjct: 280 SEKAKFARHKVANALTQNAFKNY-TYRKVISKGAHQIDGKTYNVKEDLYDVVPKDNSK 336


>gi|313890351|ref|ZP_07823983.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121337|gb|EFR44444.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 390

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 83/333 (24%), Positives = 140/333 (42%), Gaps = 56/333 (16%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           KPK SSIV+D +   +         R PAS++K+ TLY++FE L   K+ L+T+I  S T
Sbjct: 45  KPK-SSIVVDASNGDILWQDNALTVRDPASMSKVFTLYLLFEDLAKGKITLDTKITASDT 103

Query: 110 AATQNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILM 162
              Q+ SK+Y      +     +     I  +   S+N  +     ++S  +   F   +
Sbjct: 104 --DQSISKIYEISNNKIVAGVDYPIRDLITMIAVPSSNAATVMVANYLSQNNSSAFLDRI 161

Query: 163 SNKAKKIGMQNTIYKNA--------SGLHDKNQI-------TTARDQAILGILLRKNFPQ 207
           +N AK++GM +T + NA        +G ++           T+A D AIL     K +P 
Sbjct: 162 NNTAKRLGMLDTHFNNAGGAVAEAFNGYYNPKNYDKSAPNLTSAHDLAILVYHFLKKYPD 221

Query: 208 YYKYF-----SIRKFRYRNRIITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRY 258
              Y                   ++N  L         +DG+KTG + ++ FN + + + 
Sbjct: 222 IVTYTNKSIVKTMVGTPYEETFHSYNYSLPGDKYGLKGVDGLKTGSSPSAAFNAMVTAKR 281

Query: 259 KDDPIVAVVMGMPTSQERDQK------ALELITSFLEKKTLKHQQTHRKDNL-------- 304
               ++ +VMG+    ++D +      A  L       K LK+ +T ++ NL        
Sbjct: 282 GKARVITIVMGVGDWTDQDGEFYRHPFANALTEEGF--KILKNGKTQKQANLFPNNKIHT 339

Query: 305 --SSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
             SS S K++   KK+     QF+      HS 
Sbjct: 340 KGSSYSYKEN---KKVATLIDQFESFVDHHHSI 369


>gi|116629129|ref|YP_814301.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus gasseri ATCC
           33323]
 gi|282851112|ref|ZP_06260486.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus gasseri
           224-1]
 gi|116094711|gb|ABJ59863.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus gasseri ATCC
           33323]
 gi|282558064|gb|EFB63652.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus gasseri
           224-1]
          Length = 308

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 64/300 (21%), Positives = 127/300 (42%), Gaps = 35/300 (11%)

Query: 25  QRNIQLMGKILFLSIIMI---------SMASELHAKPK----YSSIVIDVNKNQMTGFKQ 71
           ++N   +  I+ +++  +         SM S  HA        S++ ID     +   K 
Sbjct: 9   KKNFLWIIGIVVIAVCFLLWKNNFGPNSMPSNYHANQVDLNVKSAVAIDAKNGNVIYAKN 68

Query: 72  DEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP----SKLYLKEKTYF 126
                  AS+TK++T Y+  + ++ KK+  +T +  ++           + + L     +
Sbjct: 69  ANQSLPIASMTKLLTTYLTLKAIKEKKIFWDTTVSPTQEIINLGSNPDYASVPLNLGQKY 128

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK- 185
           T ++   A + +SAN+ +      +SG+E  F   M  +A K  + N  +    GL +K 
Sbjct: 129 TVKELYDAALIKSANNAARMLAIAVSGNETNFLNQMRQQANKWKLHNVKFVTVDGLPEKK 188

Query: 186 ----------NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
                         +A D AI+   L  ++P+      + K  +RN ++TN NK+LN + 
Sbjct: 189 KNFLGMTTTIENKMSANDMAIIARKLVTDYPEVLNTTKVAKTYFRNTLMTNSNKMLNGLS 248

Query: 236 N------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           +      +DG+KTG T  +G     ++   +  ++ V++G     ER  +  +L+     
Sbjct: 249 DYDPNYPVDGLKTGTTDGAGSCFTCTVDKNNKRVITVILGAQNDNERFSETKKLLNYSFN 308


>gi|157736385|ref|YP_001489068.1| serine-type D-Ala-D-Ala carboxypeptidase [Arcobacter butzleri
           RM4018]
 gi|157698239|gb|ABV66399.1| serine-type D-Ala-D-Ala carboxypeptidase [Arcobacter butzleri
           RM4018]
          Length = 273

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/269 (26%), Positives = 116/269 (43%), Gaps = 19/269 (7%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPASL 80
              L   IL  + IM    +E +   K      S IV D+ K Q+   K  ++   PASL
Sbjct: 6   KFLLSALILIFTPIMAFSYTEANVFQKIEKDLDSIIVKDLTKKQLIFSKDANQQVSPASL 65

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           TK+MT  +  E  +     +++ + ++       P+ L  K          + A + RSA
Sbjct: 66  TKIMTAILAIESNK-----MDSIVTITADMKKVEPTILGFKVGEKIYLRDLVNAALIRSA 120

Query: 141 NDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           ND + +   ++  G ++KF  +M+ KAKK+GM  T ++N  G   KN  +TA D   L  
Sbjct: 121 NDAANSIAIYLGNGDKQKFVNMMNAKAKKLGMTKTTFQNPCGFDAKNHKSTASDLLKLTE 180

Query: 200 LLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
              KN   +        + +      R   +   NKL  K   + G+KTGYT  +G  ++
Sbjct: 181 YAIKNS-TFNAIVRKNSYSFKAINTKRTYTVYTSNKLQPKEKYMIGVKTGYTNQAGPCLI 239

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALE 282
              +     I+ V++      E  + AL+
Sbjct: 240 ARAKEGKKDILLVMLNSHNRWENTKLALD 268


>gi|322372917|ref|ZP_08047453.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C150]
 gi|321277959|gb|EFX55028.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C150]
          Length = 448

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 67/317 (21%), Positives = 129/317 (40%), Gaps = 30/317 (9%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
                    A    S+++ID N   +   +  DE R PAS++K MTLY++FE +   ++ 
Sbjct: 32  AAGYTEATEAYRPKSTLLIDGNTGDVLWEENADEVRDPASMSKAMTLYLVFEAMSKGEIS 91

Query: 100 LNTQIPVSKT----AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
            +T I  + T    A     S   +     +T  + I      S+N  +     +++ ++
Sbjct: 92  EDTVITATPTDQAIAEIYEISNNKIVAGVQYTVSELITMTAVPSSNVTTVMLANYLTNND 151

Query: 156 -KKFAILMSNKAKKIGMQNTIYKNASGLH---------------DKNQITTARDQAILGI 199
             K+   M+ K+K++GM +T + NASG                 ++   TTARD AI+  
Sbjct: 152 PDKWIDKMNEKSKELGMTHTKWYNASGAVAVAFKGYYNPQRYDINQTNQTTARDLAIMTY 211

Query: 200 LLRKNFPQYYKYF-----SIRKFRYRNRIITNHNKLL----NKMHNIDGIKTGYTRNSGF 250
              K +P+   Y      +++K          +N  +      +  +DG+KTG +    F
Sbjct: 212 NFIKKYPKILNYTDKPVVTVKKGTPYEETFETYNYSIPGAKYGIKGVDGLKTGSSPEGAF 271

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLK 310
           N + +++  D  ++AV+MG     ++  + +         + +    +++K         
Sbjct: 272 NYINTIKRGDQRMIAVIMGSGDWSDQTGEEIRHTFGNALVEKMYKDFSYKKVLSKGEQKI 331

Query: 311 KSLMIKKLKRTYSQFKK 327
                   K  Y+  KK
Sbjct: 332 DGKKYDVAKDVYATVKK 348


>gi|298526808|ref|ZP_07014217.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|298496602|gb|EFI31896.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
          Length = 330

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 90/234 (38%), Gaps = 15/234 (6%)

Query: 65  QMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEK 123
           ++   +    R+ PAS+ K+    +    + +  L LN  +  +   A    +K+ +   
Sbjct: 31  RVIAARDPHGRHRPASVIKV---LVAMASINT--LTLNKSVAGTADDAAVEGTKVGVNTG 85

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
             +T  Q +  L+  S ND + A    + G        ++  A K+G ++T     SGL 
Sbjct: 86  GTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAA-LEKINLLAAKLGGRDTRVATPSGLD 144

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI------ITNHNKLLNKMHNI 237
                T+A D  +      +N P +    + R F +          + N N+LL      
Sbjct: 145 GPGMSTSAYDIGLFYRYAWQN-PVFADIVATRTFDFPGHGDHPGYELENDNQLLYNYPGA 203

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM-GMPTSQERDQKALELITSFLEK 290
            G KTGYT ++G   V +       ++ V++ G        ++A  L+      
Sbjct: 204 LGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNT 257


>gi|91774582|ref|YP_544338.1| murein-DD-endopeptidase [Methylobacillus flagellatus KT]
 gi|91708569|gb|ABE48497.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Methylobacillus flagellatus KT]
          Length = 336

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 99/242 (40%), Gaps = 19/242 (7%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ- 113
           +++++    ++   K  D     ASLTK+MT  ++ +  Q     +N ++ +++      
Sbjct: 92  AMIVNQESGEVLFAKGTDIAAPIASLTKLMTAMVVLDAQQD----MNEKLRITREDIDTL 147

Query: 114 --NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S++ +      T  + +   +  S N  ++A G    G    F   M+ KA ++GM
Sbjct: 148 KGTGSRMPI--GATLTRAEMLQLALMASENRAASALGRHYPGGLNAFVAAMNAKALQLGM 205

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------NRIIT 225
            ++ + + +GL+  N ++TA D   +     + +P+     +   +              
Sbjct: 206 LHSRFADPTGLNSAN-VSTAEDLVKMVRAAYQ-YPEIRHVSTTTAYAVPVNGARAPLHYV 263

Query: 226 NHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+     + G+ KTGY   +G  +V        P++ V++   +   R   A ++ 
Sbjct: 264 NSNVLVRNSDWVIGLSKTGYINEAGRCLVMQAEVGGQPLIIVLLDSFSKNARVGDAQKIR 323

Query: 285 TS 286
             
Sbjct: 324 KW 325


>gi|315445088|ref|YP_004077967.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1]
 gi|315263391|gb|ADU00133.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1]
          Length = 297

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 106/264 (40%), Gaps = 23/264 (8%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSK 96
            I+  + +  +   P  + ++ D++   +   +Q+  R+ PAS  K++   ++ +     
Sbjct: 33  GIVQPAGSVPVPDGPAQAWVLADMDTGAVLAARQENGRFAPASTIKILLAMVVLD----- 87

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           +L L+  +  ++       +   +   T +TT Q +  L+  S ND +      + G + 
Sbjct: 88  ELPLDATVVANEADTRVECNCAGVAPGTTYTTRQLLEGLLLVSGNDAANTLATMLGGRDA 147

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDK--NQITTARDQAILGILLRKNFPQYYKYFSI 214
                M+ KA  +G   T   + SG+     +  +T RD A+L       +P + +  + 
Sbjct: 148 A-VAKMNAKAAGLGAHGTRAGSPSGIDGPGIDIWSTPRDLAVLFRAAMA-YPVFAQITAQ 205

Query: 215 RKFRYRNR----IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM-- 268
               +  +    ++ N +++L++     G KTGYT  +    V         +V  +M  
Sbjct: 206 PTAVFPTKSGDVVLVNQDEMLHRYPGTFGGKTGYTDLARKTFVAGASRNGRHLVVAMMYG 265

Query: 269 ----GMPTSQERDQKALELITSFL 288
               G PT  +   +A  L+    
Sbjct: 266 LVTEGGPTYWD---QASALLDWGF 286


>gi|225867884|ref|YP_002743832.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701160|emb|CAW98052.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus equi
           subsp. zooepidemicus]
          Length = 393

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 72/282 (25%), Positives = 126/282 (44%), Gaps = 32/282 (11%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           KPK +SIV+D   +++      D PR PAS++KM TLYI+FE L   K+ L+T I  ++T
Sbjct: 42  KPK-ASIVVDAKTSEILWQDNIDMPRDPASMSKMFTLYILFEELAKGKITLDTTITATET 100

Query: 110 AAT----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK-KFAILMSN 164
                     S   +     +     I+  +  S+N  +     ++S ++   F   ++ 
Sbjct: 101 DQAISKIYEISNNNIVAGVAYPIRDLIIMTVVPSSNAATVMIANYLSNNDASAFIDRINK 160

Query: 165 KAKKIGMQNTIYKNASGLHDK---------------NQITTARDQAILGILLRKNFPQYY 209
            AK++GM NT + NASG   +               + ITTARD A L      N+P   
Sbjct: 161 TAKELGMTNTHFSNASGAIAQAFQGYYVPEKYDLTASNITTARDFATLIYYFLNNYPSIL 220

Query: 210 KYFSIRKFRYR-----NRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
            + +    R            ++N  L      +  +DG+KTG + ++ FN V + +  +
Sbjct: 221 DFTNQTVVRTMVGTPYEEEFHSYNHSLPDGKFGIEGVDGMKTGSSPSAAFNAVVTAKRGN 280

Query: 261 DPIVAVVMGMPTSQERDQKA-LELITSFLEKKTLKHQQTHRK 301
             ++ VV+G+    +++ +       + L +K  K  +T  K
Sbjct: 281 TRLITVVLGVGDWSDQNGEFYRHPFINALTEKAFKDSKTLTK 322


>gi|227505356|ref|ZP_03935405.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium striatum ATCC
           6940]
 gi|227198058|gb|EEI78106.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium striatum ATCC
           6940]
          Length = 419

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 56/292 (19%), Positives = 113/292 (38%), Gaps = 18/292 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + +V D++  ++   K    RY PAS+ K +   ++ + +      L+ ++  +   A
Sbjct: 106 ASAWMVSDIDTGEIIAMKDPNGRYRPASIIKALLALVVIDEV-----PLDKKVKATMKDA 160

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +   S + +     +T EQ +  L+  S ND + A    + G E+  +  ++  AKK+G 
Sbjct: 161 SIEGSAVGIGPDGEYTVEQLLQGLLMASGNDAAHALAGQLGGDEEA-SKKVNALAKKLGT 219

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY------RNRIIT 225
           ++T   + SGL      T+A D +I+     +N   + +        +          + 
Sbjct: 220 RSTRAASYSGLDSAGMSTSAEDISIIYRAAFRN-KTFARIVDTEHVEFPGWGELPGYELW 278

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE--RDQKALEL 283
           N N L     +  G KTGYT ++    V +L      + AV++           Q+A  L
Sbjct: 279 NDNGLFLNDPDGIGGKTGYTEDAHHTFVGALDRGGRRLQAVILDTTVEHGFRAWQQAQML 338

Query: 284 ITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           +    + K    +      + ++ +   S   K  +   +      A   S 
Sbjct: 339 LDEAYKVKP--GEGVGTLSDAAAPTSNTSTATKTKEPAPTTSPSASAHKKSA 388


>gi|307719458|ref|YP_003874990.1| D-alanyl-D-alanine carboxypeptidase A [Spirochaeta thermophila DSM
           6192]
 gi|306533183|gb|ADN02717.1| putative D-alanyl-D-alanine carboxypeptidase A [Spirochaeta
           thermophila DSM 6192]
          Length = 387

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 107/242 (44%), Gaps = 13/242 (5%)

Query: 62  NKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
               +   KQ +  +PA SLTK++T Y++ + ++   L  +  +PV    A      + S
Sbjct: 33  TTRTVLFEKQADLPHPAASLTKLVTAYLVLQAMEHGLLREDLPLPVPSALARIPFPPDAS 92

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L   T  T  Q +   +  SAND + A    ++     FA  M+   + +G  +  +
Sbjct: 93  LAGLTPGTTLTPAQLLSLTLVYSANDAACALALLLAPDIPTFARRMNTLVQSLGYSHLSF 152

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQY-YKYFSIRKFRYRNRIITNHNKLLNKMH 235
           +  SGL   +   TAR+ A+        FP    +Y S R      R   N N LL +  
Sbjct: 153 EEPSGLS-PHNTITAREIALFAADYLDRFPSAPARYHSPRAVTIGGRTYLNRNTLLGRYP 211

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG--MPT----SQERDQKALELITSFLE 289
            ++G+KTGY   SGF+IV   R     ++AV++G   P+     QERD +A  L+    +
Sbjct: 212 GLEGLKTGYLEESGFHIVAYARRGPTSLIAVLLGIQAPSYWEGMQERDHQAAALLDYGFD 271

Query: 290 KK 291
             
Sbjct: 272 TY 273


>gi|193222252|emb|CAL61007.2| D-alanyl-D-alanine endopeptidase precursor (DD-endopeptidase)
           (Penicillin-binding protein 5) (PBP-5) [Herminiimonas
           arsenicoxydans]
          Length = 308

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 67/271 (24%), Positives = 116/271 (42%), Gaps = 16/271 (5%)

Query: 39  IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKK 97
           I  +SM  +  A     ++VID + +++   K        AS+TK+MT  ++ E  Q   
Sbjct: 42  IAGLSMTRDALALASSVALVIDQSTSEVLFEKNANVTLPIASITKLMTGLVVVEAQQD-- 99

Query: 98  LHLNTQIPVSKTAATQNP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
             +N  + V+     +   S   L+  +  +    +   +  S N  ++A G    G  +
Sbjct: 100 --MNEMLEVTAEDIDREKNSSSRLRVGSQLSRANMLHIALMSSENRAASALGRHYPGGLR 157

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F   M+ KAK +GM+ T Y +++GL   N + +ARD A L +    N P   +Y +  K
Sbjct: 158 AFVATMNAKAKSLGMRGTHYVDSTGLS-SNNVASARDLAKLVVEA-YNHPILRQYSTDSK 215

Query: 217 F--RYRNRIIT--NHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           +      R +   N N+L+       GI KTGY   +G  +V     K+ PIV + +   
Sbjct: 216 YVVEPGGRALQYANSNRLVTNPDWEIGIQKTGYISEAGRCLVMQTNIKERPIVMIFLDSK 275

Query: 272 TSQERDQKALELITSFLEKKTLKHQQTHRKD 302
               R   A  +       +T++ Q   R +
Sbjct: 276 GKFSRLGDAARIRKWL---ETMEPQNVARSN 303


>gi|309774606|ref|ZP_07669631.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308917637|gb|EFP63352.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 336

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 22/224 (9%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---- 110
           ++VID+   Q+   K  D+  +PASLTK++T  +  +  +     L+ +I ++       
Sbjct: 72  AMVIDLKDQQVLYEKNSDKKLFPASLTKVLTAIVALDNAED----LHKKITITDKDIKGL 127

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A  N S   L      T E  + ALI  S  D + A    ++GS   F   M++KA  +G
Sbjct: 128 AEANASVAGLAVGEQVTIEDLLYALILPSGADGANALANHLNGSVPNFVKDMNSKADGMG 187

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI------------RKFR 218
           M +T + N +GLHDK   TT +D   +     KN P + K  +             +  +
Sbjct: 188 MTHTHFTNTTGLHDKQHYTTLQDMKKMMDHAWKN-PAFRKVMTTLRYSLPATKQHPKGLK 246

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
             + ++   N L      I G K+GYT  +G+ +++    KD  
Sbjct: 247 LNSTLLFYDNDLKFDGGRIIGGKSGYTPEAGYCLISVAEMKDGH 290


>gi|296394426|ref|YP_003659310.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Segniliparus
           rotundus DSM 44985]
 gi|296181573|gb|ADG98479.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Segniliparus
           rotundus DSM 44985]
          Length = 289

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 90/237 (37%), Gaps = 11/237 (4%)

Query: 56  SIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK--TAAT 112
            +V D++  ++   +    RY PAS  K +   ++ + L +       ++  +     A 
Sbjct: 48  WLVADLDTGEVLASRDAHGRYRPASTIKTLLAIVVLDELDTA-----QKVTETDADEVAD 102

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           +     +++     +  + + A +  S+N  + A    + G        M+ +A ++G  
Sbjct: 103 RESVVKFIRPGEVRSVYELLEATLMISSNGAANALARSLGGVGAA-VAKMNAEAARLGAL 161

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
           +T     SGL      T+  D A+L     +  P +               + N + LL 
Sbjct: 162 DTHAATPSGLEAPGASTSPNDLALLFQAALRR-PDFAAIVGQESAALPGAQLVNRDPLLG 220

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
               + G KTG+T  + +N V +       +V  VM  P S    ++A  L+    E
Sbjct: 221 SYPGMLGGKTGFTDEAQYNFVGAAARSGRRLVVAVMHNPGSYP-ARQAGALLDWGFE 276


>gi|194289422|ref|YP_002005329.1| d-alanyl-d-alanine carboxypeptidase [Cupriavidus taiwanensis LMG
           19424]
 gi|193223257|emb|CAQ69262.1| putative D-Alanyl-D-alanine carboxypeptidase [Cupriavidus
           taiwanensis LMG 19424]
          Length = 378

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 108/257 (42%), Gaps = 13/257 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++V+D N N++   K      P AS+TK+MT  ++ +     +L ++  + +++      
Sbjct: 110 ALVMDQNSNEVLFQKNASAVLPIASITKLMTALVVMDS----RLPMDEVLTITEEDRDTE 165

Query: 115 P-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   L+  T  T ++ +L  +  S N  ++A G    G    F   M+ KA+++GM +
Sbjct: 166 KHSSSRLRFGTQLTRQELLLLALMSSENRAASALGRHYPGGLPAFVQAMNRKARELGMND 225

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR--NRIIT--NHNK 229
           + + ++S     + +++A D   +     +N P   ++ +  +       R     + N+
Sbjct: 226 SHFVDSS-GLSSSNVSSATDLVRMVNAAYRN-PTIREFSTQTEHEVNVLGRTQHYVSTNR 283

Query: 230 LLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           L+   +   G+ KTG+   +G  +V   R +   +V V +       R   A  +     
Sbjct: 284 LVRGGNWEIGLQKTGFISEAGQCLVMQARVQGRNVVMVFLDSAGKLSRFADANRVKDWLE 343

Query: 289 EKKTLKHQQTHRKDNLS 305
              +   +      NL+
Sbjct: 344 HSPSSPQRGFPSSPNLT 360


>gi|220928795|ref|YP_002505704.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           cellulolyticum H10]
 gi|219999123|gb|ACL75724.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           cellulolyticum H10]
          Length = 440

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 59/299 (19%), Positives = 119/299 (39%), Gaps = 41/299 (13%)

Query: 29  QLMGKILFLSIIMISMASELHAK---PKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMM 84
           +++  ++    I++ ++    A       S I++D     +    K D    PAS TK+ 
Sbjct: 3   KVLATLIISLTILLQVSPAFSANLDIDAASYILMDAKTGSVLYEHKPDLKWRPASTTKIA 62

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAAT---QNPSKLYLKEKTYFTTEQGILALITRSAN 141
           T  +  +       +++  +  S  A T        + +      +    + AL+  SAN
Sbjct: 63  TALVALKEG-----NMDQVMTASNEAVTDIGVGGMNIGIMPGEQMSLNDLLHALLIVSAN 117

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----DKNQITTARDQAIL 197
           + +    E +   + KF   M+  + ++G +NT + N SG+     D N  ++ARD A++
Sbjct: 118 ETANIISENLYNDKSKFLEEMNKVSAEVGAKNTTFTNPSGIDEYEKDANHFSSARDLALI 177

Query: 198 GILLRKNFPQYYKYFSIRKF-----RYRNRII---TNHNKLLNKM-------------HN 236
                K +P + +    ++        +++        NKLL +                
Sbjct: 178 AKECLK-YPVFREIVEQKQLNMLPPTNKHKTWNVLNTTNKLLGQSFKYGPETGDDRNQFT 236

Query: 237 IDGIKTGYTRNSGFNIVTSL-RYKDDPIVAVVMGMPTSQER--DQKALELITSFLEKKT 292
           I G+KTG T  +G N ++S        +++VV+G+     R        L+T+  E  +
Sbjct: 237 ITGLKTGSTLRAGANFISSAVNKDGLELISVVLGVNNKPNRSVFDFTKTLLTAGYENYS 295


>gi|145522840|ref|XP_001447264.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124414764|emb|CAK79867.1| unnamed protein product [Paramecium tetraurelia]
          Length = 272

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 59/228 (25%), Positives = 103/228 (45%), Gaps = 16/228 (7%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLN-TQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           R  AS+TK+MT Y++    ++  +H N T   VS  A+    +   L +    + E    
Sbjct: 47  REIASITKIMTFYVVLNMCRTMNVHTNNTYAEVSLQASLVGGTTADLLKGDVVSIEDLFY 106

Query: 134 ALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
            L+  S ND +    E    +    F   M+NKA+++ M  T Y N  GL++KN +++A 
Sbjct: 107 GLMLPSGNDAAMTLAENFGKNPLIYFIQEMNNKARELQMTQTTYANPHGLNNKNNVSSAY 166

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRY----------RNRIITNHNKLLNKMHNIDGIKT 242
           D + L   L K+  ++++     K  +          R+ I  N NKLL       GIKT
Sbjct: 167 DVSKLCNQLLKD--EFFRKVVNTKIHFTTIQDEEGFTRDVIWENTNKLL--YQGFKGIKT 222

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           G T  +G  + +  +        V++G    ++R  + ++L+   L +
Sbjct: 223 GNTSVAGPCLASYYQTASRSFTIVILGCRNQEDRWSETMQLLQWCLSQ 270


>gi|262038951|ref|ZP_06012291.1| serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia goodfellowii
           F0264]
 gi|261747032|gb|EEY34531.1| serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia goodfellowii
           F0264]
          Length = 541

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 61/285 (21%), Positives = 126/285 (44%), Gaps = 17/285 (5%)

Query: 64  NQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKE 122
            ++   + +  ++P ASLTK+M + +  + +    + L+ ++  +   A    S L +K 
Sbjct: 205 GKIIKKELETQQHPIASLTKVMNILVALDEVDKGNVSLDDKVCFTPQNANVGGSWLNVKV 264

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASG 181
              +     + + I  SAN+ +      +  G+ + F  LM+ KAK++GM NT +   +G
Sbjct: 265 GDCYLLRDLLRSEIIYSANNSAYLVAYHVGKGNIEYFVKLMNQKAKELGMNNTEFHTPAG 324

Query: 182 LHDKNQ-----ITTARDQAILGILLRKNFPQYYKYFSIRKF-----RYRNRIITNHNKLL 231
           L          ++TA D  ++G    ++  +  ++ S  +           I  + N LL
Sbjct: 325 LPTTMTGKGMDVSTAYDMFLMGKKAIED-KRIREWASEPELVLVNPAGEQVIYKSRNHLL 383

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
            +   I G+KTG+   +G+NI+ + +  +  I++VV+G  T  +R +  LE  +    + 
Sbjct: 384 GQY-GIYGLKTGFHVQAGYNIIVTGKMGNIEIISVVLGHKTHNQRTKDQLEEFSQIKNR- 441

Query: 292 TLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
            LK   T  ++ +    +K S   K          ++D   +  +
Sbjct: 442 -LKKIHTMGEE-IGEFKIKDSPKRKIKGVLAENVYQLDDTNYDFK 484


>gi|169334052|ref|ZP_02861245.1| hypothetical protein ANASTE_00445 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258769|gb|EDS72735.1| hypothetical protein ANASTE_00445 [Anaerofustis stercorihominis DSM
           17244]
          Length = 505

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 119/296 (40%), Gaps = 37/296 (12%)

Query: 29  QLMGKILFLSIIMISMASELHAK-PKYS-------SIVIDVNKNQMTGFKQDEPRYPASL 80
           + +   L + ++++++ S ++A  PK S        +  D  K+++     ++  YPAS 
Sbjct: 9   RTLSSFLIVVVLLLNITSNIYAAAPKVSKDSSLGLYLYEDSTKSELYSHNGNKKMYPAST 68

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT--QNPSKLYLKEKTYFTTEQGILALITR 138
           TK+MT  +  EY++     LN ++             S   L +    + +  +  L+  
Sbjct: 69  TKIMTAALTLEYIKD----LNKKVTTGSELNRLPAGSSTASLYKNETLSYKDLLYGLMLP 124

Query: 139 SANDVSTAFGEFISGSEKK------------FAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           S ND +      +     K            F   M+ KAK+IGM  T + N  G HDKN
Sbjct: 125 SGNDAAIVLACNVGKVISKDKNISKDKAYSVFVKEMNKKAKEIGMTKTHFNNPHGFHDKN 184

Query: 187 QITTARDQAILGILLRKNFPQYYK----YFSIRKFRYRNRIITNHNKLLNK-----MHNI 237
             +T  D A+L      +F  Y +     +            + HN L+ +         
Sbjct: 185 HYSTPHDMAVLAAYA-DDFSYYNRVVDSTYYETTTNKTTHRWSGHNALILRGSKYFYKPA 243

Query: 238 DGIKTGYTRNSGFNIVTSLRYK-DDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
            G KTGYT  +G  +V S          AVV+  PT+ ++   A +L+    E+ +
Sbjct: 244 KGDKTGYTGEAGRCVVGSSENDEGIRYYAVVLHSPTTAQQFGLARDLLKYGNEETS 299


>gi|71902908|ref|YP_279711.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS6180]
 gi|71802003|gb|AAX71356.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS6180]
          Length = 393

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 78/337 (23%), Positives = 144/337 (42%), Gaps = 51/337 (15%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHA-------------KPKYSSIVIDVNKNQMTGFKQ 71
           +R I  +   +  S++ +  A ++               +PK SSIV+D N + +     
Sbjct: 3   KRIILTIFTFICFSVMPLVQAEDVMDITRQAGYTVSEVNRPK-SSIVVDANSSDILWQDN 61

Query: 72  -DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYF 126
            D PR PAS++KM TLYI+FE L   K+ ++T I  + T    A     S   +     +
Sbjct: 62  IDIPRDPASMSKMFTLYILFEELAKGKITMDTTITATPTDQAIANIYEISNNNIVAGVAY 121

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLHDK 185
                I      S+N  +     ++S ++   F   ++  AK++GM NT + NASG   +
Sbjct: 122 PIRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRINATAKQLGMTNTHFSNASGAAAQ 181

Query: 186 ---------------NQITTARDQAILGILLRKNFPQYYKYF------SIRKFRYRNRII 224
                          + ITTARD + L     K +P+   +       ++    Y     
Sbjct: 182 AFQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPEIISFTNKSVVHTMVGTPYEEEFH 241

Query: 225 TNHNKLLN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           T ++ L +    M  +DG+KTG + ++ FN + + +     ++ +VMG+    +++ +  
Sbjct: 242 TYNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKRGKTRLITIVMGVGDWSDQNGEFY 301

Query: 282 E--LITSFLEK-----KTLKHQQTHRKDNLSSTSLKK 311
               + +  EK     KTL  +   + + L   + K+
Sbjct: 302 RHPFVNALTEKGFKDSKTLSKKARQKLEKLVPQTKKE 338


>gi|42526491|ref|NP_971589.1| penicillin binding protein [Treponema denticola ATCC 35405]
 gi|41816684|gb|AAS11470.1| penicillin binding protein [Treponema denticola ATCC 35405]
          Length = 478

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 78/303 (25%), Positives = 135/303 (44%), Gaps = 31/303 (10%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           EL      S I+I  N   +      +    PASLTK++T+Y + +  Q K   L   + 
Sbjct: 94  ELPKIDAESYILIHANTGTILAESNADKIIPPASLTKLVTIYTMLQKPQFKD--LEKVVF 151

Query: 106 VSKTAAT----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
             + A      +  + + L E    + E+ I  +   S ND + A      GS +KF + 
Sbjct: 152 PPEEAWAIFLPKGAAWMGLGENQSLSIEELIRGMAVCSGNDAALAAALLTEGSIEKFTLK 211

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-KYFSIRKFRYR 220
           M+   K +G+++T ++++SGL +KNQ TTARD A+  +   K +P+   K+ S+ +  Y 
Sbjct: 212 MNEAVKTMGLKSTRFEDSSGLSEKNQ-TTARDFALFSLHYLKQYPENLKKFHSVNEISYP 270

Query: 221 NR----------------IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
            +                I    N LL K+   DG+KTG+   SGFNI  + +   +  +
Sbjct: 271 QKHNILIKKNSDGLKDFQIKPATNTLLKKIEGCDGLKTGFIYESGFNISLTAQKNGERFI 330

Query: 265 AVVMGMPTSQ------ERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKL 318
           AV++G           +R+Q +++L+    +       + H K   S + L  +L +K  
Sbjct: 331 AVILGGHGKNFTEGIFKREQNSIKLMNFAFDNFKSFDIREHNKIKRSVSVLSSNLNVKTS 390

Query: 319 KRT 321
              
Sbjct: 391 AFM 393


>gi|330817668|ref|YP_004361373.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           gladioli BSR3]
 gi|327370061|gb|AEA61417.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           gladioli BSR3]
          Length = 383

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 103/248 (41%), Gaps = 13/248 (5%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            +  A     + V+D N ++    K      P AS++K+MT  ++ +     K  L+ QI
Sbjct: 123 PDALALRSSVAYVVDQNSSEPLFDKNSRAVVPIASISKLMTAMVVLDS----KASLDEQI 178

Query: 105 PVSKTAATQN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            V+         +   L   +  + E  +   +  S N  + A   +  G    F   M+
Sbjct: 179 TVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMN 238

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY---- 219
            KAK +GM +T ++N++GL   N +++ARD   +     + +P   ++ + R +      
Sbjct: 239 AKAKSLGMTDTHFENSTGLTSLN-VSSARDLVKMIDAAYQ-YPLIRRFSTDRTYTVFTGK 296

Query: 220 RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           R+ +  + N L+ N   +I   KTG+   +G  +V        PIV V++       R  
Sbjct: 297 RSLVYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRPIVMVLLDSFGKYSRVA 356

Query: 279 KALELITS 286
            A  +   
Sbjct: 357 DASRVRNW 364


>gi|228477469|ref|ZP_04062105.1| D-Alanyl-D-Alanine carboxypeptidase [Streptococcus salivarius
           SK126]
 gi|228250904|gb|EEK10092.1| D-Alanyl-D-Alanine carboxypeptidase [Streptococcus salivarius
           SK126]
          Length = 448

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 132/326 (40%), Gaps = 40/326 (12%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
                    A    S+++ID N   +   +  DE R PAS++K MTLY++FE +   ++ 
Sbjct: 32  AAGYTEATEAYRPKSTLLIDGNTGDVLWEENADEVRDPASMSKAMTLYLVFEAMSKGEIS 91

Query: 100 LNTQIPVSKT----AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
            +T I  + T    A     S   +     +T  + I      S+N  +     +++ ++
Sbjct: 92  EDTVITATPTDQAIADIYEISNNKIVAGVDYTVSELITMTAVPSSNVTTVMLANYLTNND 151

Query: 156 -KKFAILMSNKAKKIGMQNTIYKNASGL---------------HDKNQITTARDQAILGI 199
             K+  +M+ K+K++GM NT + NASG                +++   TTARD AI+  
Sbjct: 152 PDKWLDMMNEKSKELGMTNTKWFNASGAVAVAFKGYYSPQRYDNNQTNQTTARDLAIMTY 211

Query: 200 LLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLL----NKMHNIDGIKTGYTRNSGF 250
              K +P   KY S     ++K          +N  +      +  +DG+KTG +    F
Sbjct: 212 NFIKKYPDILKYTSKPVVTVKKGTPYEETFETYNYSIPGAKYGIDGVDGLKTGSSPEGAF 271

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQK----------ALELITSFLEKKTLKHQQTHR 300
           N + +++  D  ++AV+MG     ++  +            ++   F  KK L   +   
Sbjct: 272 NYIDTIKRGDQRMIAVIMGSGDWSDQTGEEIRHTFGNALVEKMYKDFSYKKVLSKGEQEI 331

Query: 301 KDNLSSTSLKKSLMIKKLKRTYSQFK 326
                +        +KK K      K
Sbjct: 332 DGKKYNVEKDVYATVKKGKDPKISVK 357


>gi|239637166|ref|ZP_04678158.1| penicillin binding protein 4 [Staphylococcus warneri L37603]
 gi|239597298|gb|EEQ79803.1| penicillin binding protein 4 [Staphylococcus warneri L37603]
          Length = 412

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 125/292 (42%), Gaps = 26/292 (8%)

Query: 64  NQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKL 118
            Q+   +       PAS TK+MT+ ++++ ++S K+ +N ++ ++          N +  
Sbjct: 55  GQILYDYHGSTQVDPASTTKLMTMNLVYDDIKSGKIKMNDKVKITSRYEKMSELPNLTTF 114

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            LKE T  T  Q +      S+N  +    E I GS  KF   M+ KAK +GM++T + N
Sbjct: 115 PLKEGTTVTINQLLKQAALESSNAATLVLAEHIDGSSSKFTDRMNQKAKDLGMKDTTFTN 174

Query: 179 ASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII 224
            SG                D    TTARD ++L   +    P   K   + K +  N+ +
Sbjct: 175 PSGANNKILKPYEPKSYKDDTISHTTARDMSLLSNHILNAHPDVLKITKLSKDKQSNQEL 234

Query: 225 TNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM-PTSQERDQK 279
            N N  L    + M ++DG+KTG T ++G+N+  + +     IV  +  + P   E+ + 
Sbjct: 235 HNTNTSLPNEADGMKDVDGLKTG-TSDNGYNLELTAKRNHLRIVTGIFNVKPYPDEQAKH 293

Query: 280 ALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAK 331
           A + + + L +   K     +  +     +       K K  Y    K  +K
Sbjct: 294 ARQKLANALTEHAFKQYDYRKVISKGEHEIDGKKYEVK-KDLYDLVPKDKSK 344


>gi|46446028|ref|YP_007393.1| putative serine-type D-Ala-D-Ala carboxypeptidase (penicillin
           binding protein) [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399669|emb|CAF23118.1| putative serine-type D-Ala-D-Ala carboxypeptidase (penicillin
           binding protein) [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 456

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 118/313 (37%), Gaps = 37/313 (11%)

Query: 34  ILFLSIIMISM--ASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIF 90
           I F++II  S+  A         ++I+++     +   ++    ++PAS TK+ T     
Sbjct: 38  IFFVTIISFSLRSAPLDFKIAGEAAILLNAESGAILFEQEAYSCQFPASTTKVATALYAL 97

Query: 91  EYLQSKKLHLNTQI--------PVSKTAATQ-----------NPSKLYLKEKTYFTTEQG 131
               SKK  LN  +         +S+ A  +           + S + LK+    +    
Sbjct: 98  ----SKKQDLNQMMAAEQDSLTTLSQEAKKKTNYDPPYRLEPDGSHIGLKKGEMMSLHDL 153

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  S ND +      +  +   F   ++   KKIG + T + N  GLH     TTA
Sbjct: 154 LGGMLIPSGNDAANVIANALGPTIPVFMAELNIYLKKIGCEKTTFYNPHGLHHPQHQTTA 213

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKF------RYRNRIITNHNKLLNK----MHNIDGIK 241
            D A++     K  P + +    +K+      +     +   N+L+           G K
Sbjct: 214 YDLALITKEALKQ-PVFCELIGQKKYLRPKTNKQAATTLLQTNRLIRPGSFYYSKAIGGK 272

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRK 301
           TGY   +    +   R ++  ++ V++G        Q A++L  +   +  ++       
Sbjct: 273 TGYHAKAKKTYIGVARSEERTLIVVLLGYQERNTIFQDAIKLFDAAFNQPKIQRTFLKEG 332

Query: 302 DNLSSTSLKKSLM 314
               + +L K+  
Sbjct: 333 RQSFAHNLPKAAC 345


>gi|259502317|ref|ZP_05745219.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259169697|gb|EEW54192.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 407

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 61/299 (20%), Positives = 132/299 (44%), Gaps = 35/299 (11%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMM 84
           +++  I+ L +++  +A++  A  +    ++++ID +  Q+   +    + P AS++K++
Sbjct: 5   KILVLIMILPLMLAGIATDAMASDRINARAAVMIDASTGQVLYEQNANQKLPVASISKLL 64

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           T+ +I + L+ + +  +T++ VS      A+  + S + ++    +T  + + A + +SA
Sbjct: 65  TVAVIHDELKQRVITADTKVNVSSDVAAIASDPSYSAIGVQAGQAYTVRELLNAAMVKSA 124

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HDKN 186
           +  + A       + ++F + M  KA++IG++N    N  GL               +  
Sbjct: 125 DGATLALAGADGSNMEEFNLKMDQKAREIGLRNFTIVNPVGLTNGDLKGLKLEQYADNAE 184

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLLNKMHN----- 236
              TA D A L   L + +P   +  + R   +     +     N NK+L          
Sbjct: 185 NAMTANDVARLARYLIQTYPDLLQVTAQRSANFYIAKDKATKAENLNKMLPGDRYAVSGV 244

Query: 237 -IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM--GMPTSQERDQKALELITSFLEKKT 292
            IDG+KTG +  +G + V++  Y+   ++ VV+         R     +L       KT
Sbjct: 245 KIDGLKTGTSAAAGPSFVSTGLYRGHRVITVVLHANGAGGDARFIATQQLYDRLKHMKT 303


>gi|116493443|ref|YP_805178.1| D-alanyl-D-alanine carboxypeptidase [Pediococcus pentosaceus ATCC
           25745]
 gi|116103593|gb|ABJ68736.1| D-alanyl-D-alanine carboxypeptidase [Pediococcus pentosaceus ATCC
           25745]
          Length = 418

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 72/329 (21%), Positives = 142/329 (43%), Gaps = 48/329 (14%)

Query: 29  QLMGKILFLSIIMISMASELHAK-------------PKYSSIVIDVNKNQMTGFKQ-DEP 74
           +L   ++   ++M S A  L A+                S+I +D N  Q+   K  +  
Sbjct: 3   KLYTMLIAFLMMMTSFAPALAAENNESVIEATTSNITAKSAIAVDENTGQILYSKDENTV 62

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYFTTEQ 130
           R  AS++K++  Y+I + ++  ++H N ++ ++K+    +     + + L     +T   
Sbjct: 63  RPIASMSKIVAAYLIMKSVKEGQMHWNQKVSINKSLEEVSNNSELTNVPLSSNQTYTVRN 122

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK----- 185
            + A +  SAN    + G+  +G+ +KF   M +  KK G+++    NA+GL +      
Sbjct: 123 LLDASLIYSANAAILSLGKAQAGTSEKFVNEMRSTVKKWGIKDAKLYNAAGLLESQVGSE 182

Query: 186 ---------NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI----ITNHNKLLN 232
                        +A+D AI+   + K FP+      I+K  +        ITNHN+LL 
Sbjct: 183 KYPGTSGNIENEMSAKDMAIVISHVLKEFPEILNITKIQKTTFNTGKEELEITNHNELLK 242

Query: 233 KMH------NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
                     IDG+KTG +  +G +   + + K   +++VV+G     +R      +  +
Sbjct: 243 GAEQYEAKYQIDGLKTGTSDKAGEDFSATGKIKGHRVISVVLGS-GENQRFTDTKTIWNA 301

Query: 287 FLEK-----KTLKHQQTHRKDNLSSTSLK 310
            + K       LK+Q + + ++     +K
Sbjct: 302 LMTKLAVLSSNLKNQASVKINSAKVADVK 330


>gi|324992344|gb|EGC24265.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
           SK405]
          Length = 409

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 64/330 (19%), Positives = 133/330 (40%), Gaps = 42/330 (12%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           +A++       S++ +D    ++   K    P    S+T ++T+Y+++E +    L  +T
Sbjct: 6   VAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLLTVYLVYEAIDRGDLTADT 65

Query: 103 QIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            + +S  A T     N S + L+ K  +  +  I A +  S+N  + A  E + GSE+ F
Sbjct: 66  YVDISDYAYTLTSNPNISNVPLEAK-RYKAKDLIAASLMSSSNSATIALAEKVGGSEENF 124

Query: 159 AILMSNKAKKIGMQNTIYKNASGLH------------------------DKNQITTARDQ 194
             +M  K K+ G+++    N++GL+                        D     +A D 
Sbjct: 125 VQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYSTSASTAKKSKDTENKFSAYDL 184

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL----NKMHNIDGIKTGYTRNSGF 250
           A++   L  +FPQ     S    +     + N+N +L    N    +DG+K G +   G 
Sbjct: 185 AVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGSSDKGGS 244

Query: 251 NIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELIT----SFLEKKTLKHQQTHRKD 302
           + V +       ++ VV+ +         R      L+     +F +   +   + + K 
Sbjct: 245 SFVATTTENGIRMITVVLDVDQTDGDPYARFVATASLMNYVSQNFTQTTIVAEGEAYNKS 304

Query: 303 NLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
           + +    K+  +     + ++  ++I  +A
Sbjct: 305 HSTVIDGKQKTVPAVANKDFTIIERIANQA 334


>gi|126651542|ref|ZP_01723745.1| hypothetical protein BB14905_13055 [Bacillus sp. B14905]
 gi|126591491|gb|EAZ85597.1| hypothetical protein BB14905_13055 [Bacillus sp. B14905]
          Length = 278

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 99/221 (44%), Gaps = 13/221 (5%)

Query: 64  NQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI---PVSKTAATQNPSKLY 119
             +   K  D   YPASLTK+MT  +  E      L + T +    ++K  A QN S   
Sbjct: 46  GDVLYEKNADAIIYPASLTKIMTAIVAIEMTDD--LQMQTIVKPQTIAKYTA-QNASMAG 102

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
                + T E  +   +  S  D +    E I+GSE +F   M+ KA+++GM  T + N 
Sbjct: 103 FHAGDFVTIEDLLYGTLLASGADATATLAEAIAGSEDEFVTYMNKKAQELGMDATHFINT 162

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-NRIITNHNKLLNKMHNID 238
           SGLHD+  +++ +D + L     +N P +Y+ F+ + +       +   N L  +M ++D
Sbjct: 163 SGLHDEAHVSSLQDMSKLLRYALEN-PTFYQIFTSKAYTTHVPTELLIANSLFTRMPSMD 221

Query: 239 ----GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
               G KTGYT  +G  + + +       + +    P    
Sbjct: 222 GTILGGKTGYTPEAGLCLASLMEKDGRKFLFITTNAPGYAW 262


>gi|331091125|ref|ZP_08339967.1| hypothetical protein HMPREF9477_00610 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405347|gb|EGG84883.1| hypothetical protein HMPREF9477_00610 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 321

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 25/254 (9%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++ +  ++  ++   +   +  YPAS TK++T  +  +Y      +L+  + VSKTA   
Sbjct: 74  AAGLFSLDDKEVLYGRNIYKKIYPASTTKILTALVALKYG-----NLDDVVTVSKTATEF 128

Query: 114 NP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            P  S   +KE    T  + +  L+  S ND + A  E ISGS ++FA LM+ +A  IG 
Sbjct: 129 PPAASLCGIKEGDKLTLRELLYGLLLPSGNDAAVAIAEHISGSVEEFAKLMNKEAYSIGA 188

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
            +T + N  GLHD N  TTA D  ++     + + ++ K  S  K+          ++ L
Sbjct: 189 THTHFVNPHGLHDDNHYTTAYDLYLIFNQCIQ-YDEFIKIVSETKYDLPVTSADGTSRTL 247

Query: 232 N----KMHN-----------IDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVMGMPTSQE 275
           N     ++            + G KTG T  +   ++   +  +    V++VMG  T   
Sbjct: 248 NLETTSLYGLGEAEKPEHMTVIGGKTGNTGEAKRCLILLSKDEQGHSYVSIVMGAETKSL 307

Query: 276 RDQKALELITSFLE 289
                 +++ +  E
Sbjct: 308 VYTNMNKMLNAISE 321


>gi|312897437|ref|ZP_07756861.1| serine-type D-Ala-D-Ala carboxypeptidase [Megasphaera
           micronuciformis F0359]
 gi|310621498|gb|EFQ05034.1| serine-type D-Ala-D-Ala carboxypeptidase [Megasphaera
           micronuciformis F0359]
          Length = 326

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 121/293 (41%), Gaps = 18/293 (6%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           +  M   L L+        E+HA+   +++++D    ++   K  DE  YP   T +MT 
Sbjct: 11  LCAMVWCLGLASSFAVSDGEIHAR---AAVLMDAQTGEVLYSKNGDEKLYPGGTTMIMTA 67

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAA--TQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
            +  E        L+  +  S       ++ + L +      T    + A++T +  D +
Sbjct: 68  LLGAEA---GDTVLDGAVHFSDDVTKLDRDVAVLGISADHPVTLRNALTAMMTYTGCDAA 124

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
                 ++ S   F  +M++KA  IG  NT + N  GL D N ++TA+D A + +   +N
Sbjct: 125 LDTAVTVAPSVADFVHMMNDKAVAIGATNTHFTNPHGLPDANHVSTAKDLAKIAVYAMQN 184

Query: 205 --FPQYYKYFS--IRKFRYRNRIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYK 259
             F  +    S  +      ++ + + N+ LN      +GIKTG T   G  +V S    
Sbjct: 185 QTFKSFTGRTSFVMPYTNGGSQEVFSMNEFLNSGYKGANGIKTGATDYGGATLVASATRG 244

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           D   V  ++       R   A +L+  F   +T       ++D  S+ + KK 
Sbjct: 245 DKTYVVSILNSDN---RSGDA-KLLMDFAFAETTAIDAVSKEDGKSAVAEKKE 293


>gi|121604627|ref|YP_981956.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Polaromonas
           naphthalenivorans CJ2]
 gi|120593596|gb|ABM37035.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Polaromonas naphthalenivorans CJ2]
          Length = 363

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 59/249 (23%), Positives = 102/249 (40%), Gaps = 13/249 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++VID +  ++   K D    P ASLTK+MT  I    +   +L ++  I V++      
Sbjct: 109 ALVIDQDTREVLFSKNDHAVLPIASLTKLMTGVI----ISGARLPMDEMITVTQDDVDTE 164

Query: 115 P-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+  L      +  + +   +  S N  + A G    G    F  LM+ KAK +GM +
Sbjct: 165 KHSRSRLSVGATLSRGEMLHLALMSSENRAAHALGRTYPGGMATFVSLMNAKAKMLGMHD 224

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T Y   +GL  +NQ ++A+D A L      + P   +  +   ++     R     N N+
Sbjct: 225 TSYAEPTGLSSRNQ-SSAQDLAALVNAAHGD-PVLRELTTSPGYQVAVGSRTLQFNNTNR 282

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           L+ N   +I   KTGY   +G  +V   +     ++ V +       R   A  +     
Sbjct: 283 LVKNPDWDIGLQKTGYINEAGQCLVMQTKIAGRKLIMVFLDSAGKLSRLGDAERVRRWVE 342

Query: 289 EKKTLKHQQ 297
               +  Q+
Sbjct: 343 TNPVVTDQK 351


>gi|74316101|ref|YP_313841.1| D-alanyl-D-alanine carboxypeptidase-like protein [Thiobacillus
           denitrificans ATCC 25259]
 gi|74055596|gb|AAZ96036.1| D-alanyl-D-alanine carboxypeptidase-like protein [Thiobacillus
           denitrificans ATCC 25259]
          Length = 321

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 97/262 (37%), Gaps = 26/262 (9%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           + +      S +V D    Q    K        AS+TK+MT  ++ +  Q     L+ +I
Sbjct: 45  APMPELSAQSVLVYDQASGQPLLAKNATMQTPIASITKLMTAMLVIDADQP----LDERI 100

Query: 105 PVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            ++         +   L   + +T  Q +   +  S N  + A G    G   +F   M+
Sbjct: 101 TITSADRDTLKGTGSRLAIGSSYTRGQLLHLALIASDNRAAHALGRSYPGGIDRFVSTMN 160

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR----- 218
             A+ +GM +T+Y   +GL      +TA+D A L     +NF +     +   +      
Sbjct: 161 RTARALGMHDTVYVEPTGLS-SGNRSTAQDLAKLVDFAYQNFSEIRNISTTGYYTLGTQR 219

Query: 219 -------------YRNRIITNHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIV 264
                        YR     N N+L      + G+ KTG+   +G  +V   +  +  ++
Sbjct: 220 VVVKKKRKKARVLYRPVAFNNTNRLTRMDDWVIGLSKTGFINEAGHCLVMQAQIAERDVI 279

Query: 265 AVVMGMPTSQERDQKALELITS 286
            V++    +  R   A  +   
Sbjct: 280 IVLLDATGTNRRAGDAARIKAW 301


>gi|326778216|ref|ZP_08237481.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces cf. griseus
           XylebKG-1]
 gi|326658549|gb|EGE43395.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces cf. griseus
           XylebKG-1]
          Length = 299

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 105/281 (37%), Gaps = 25/281 (8%)

Query: 32  GKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLTKMMTLY 87
           G +L  S    +  +     PK  +    V++    +    K  D  R   S TK+MT  
Sbjct: 22  GAVLAGSAFASTAHAATPPTPKIVAKGGFVMNDGTGKTLFTKSADTRRSTGSTTKIMTAL 81

Query: 88  IIFEYLQSKKLHLNTQIPV----SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           ++      K ++L +++ V    S     +N S   L      T  Q +  L+  S  D 
Sbjct: 82  VVL---SQKNVNLKSKVTVQKAYSDYIVKKNASSARLIVGDKPTVGQLLYGLMLPSGCDA 138

Query: 144 STAFGEFISGS------EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           + A  +            K F   M+  AK + ++NT + +  G+   N  +T RD   +
Sbjct: 139 AYALADKFGSGKTRAARVKSFIGKMNATAKSLKLKNTHFDSFDGIGGGNNYSTPRDLTKI 198

Query: 198 GILLRKN--FPQYYKY------FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
                KN  F    K        + +   YR     N NK+L+      G+KTG    + 
Sbjct: 199 ASKAMKNATFRSIVKTKSTKQKVTTKSGGYRYMSWNNTNKMLSSYSGDIGVKTGSGPTAK 258

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           + +V +   K   ++  V+   +   R   A +L+    +K
Sbjct: 259 YCLVFAATRKGKTVIGTVLTSSSEANRTADAKKLMDYGFKK 299


>gi|33592636|ref|NP_880280.1| D-alanyl-D-alanine carboxypeptidase [Bordetella pertussis Tohama I]
 gi|33600419|ref|NP_887979.1| D-alanyl-D-alanine carboxypeptidase [Bordetella bronchiseptica
           RB50]
 gi|33568018|emb|CAE31931.1| probable D-alanyl-D-alanine carboxypeptidase [Bordetella
           bronchiseptica RB50]
 gi|33572282|emb|CAE41834.1| probable D-alanyl-D-alanine carboxypeptidase [Bordetella pertussis
           Tohama I]
 gi|332382053|gb|AEE66900.1| D-alanyl-D-alanine carboxypeptidase [Bordetella pertussis CS]
          Length = 259

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 97/235 (41%), Gaps = 13/235 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ- 113
           + V D+  + +   K +   R  AS++K+MT  ++ +      L ++  I ++       
Sbjct: 20  AYVQDLETSTVLFAKNENVVRPIASISKLMTALVVVDA----NLPMDEMIEITDDDVDTL 75

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +   L+  T  +    +   +  S N  + A G    G    F   M+ KA+ +GM N
Sbjct: 76  KHTTSRLRVGTVLSRGDMLHLALMSSENRAAHALGRNYPGGMPAFVAAMNAKARSLGMLN 135

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF----RYRNRIITNHNK 229
           T +   +GL  +N +++ RD A +     +  P  ++Y +  ++      R +   N N 
Sbjct: 136 TRFVEPTGLSSEN-VSSPRDLARMLRAASQR-PLIHRYSTDTEYEVEINNRTQTFRNTNL 193

Query: 230 LLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           L+ K   +I   KTG+   +G  +V   R     +  V++       R   A+ +
Sbjct: 194 LVRKPDWDIKVSKTGFINEAGECLVMLARINGRDMAIVLLDSQGKLSRIGDAVRI 248


>gi|229091482|ref|ZP_04222692.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-42]
 gi|228691856|gb|EEL45603.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-42]
          Length = 221

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 61/215 (28%), Positives = 111/215 (51%), Gaps = 25/215 (11%)

Query: 35  LFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           LF SI +IS ++             S+I+++ N  ++   K  DE    AS+TKMM+ Y+
Sbjct: 4   LFCSIAVISGSASAETVSAIEVEAGSAILVEANSGKILYEKNADESLAIASMTKMMSEYL 63

Query: 89  IFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           + E +++ KL  N ++ +S+ A      ++ S + L+    +T ++   A++  SAN  +
Sbjct: 64  VHEAVENGKLKWNQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYEAMVIYSANGAT 123

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HDKNQITT 190
            A  E I+G E  F  +M++K+K+ GM+N  + N++GL               D+    +
Sbjct: 124 IALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPEGTTPDEKNKMS 183

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
           ARD AIL   L ++FP+      I K ++ NR+++
Sbjct: 184 ARDCAILAQRLIQDFPEMLDTAKIPK-KHSNRVVS 217


>gi|167619401|ref|ZP_02388032.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis Bt4]
          Length = 364

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 97/238 (40%), Gaps = 13/238 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + V+D N  +    K      P AS+TK+MT  ++ +     K  L  QI V+       
Sbjct: 114 AYVVDQNTAEPLFDKNSRAVVPIASITKLMTAMVVLDS----KAPLTEQIDVTDEDRDYE 169

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +   L   +  + E  +   +  S N  + A   +  G    F   M+ KAK +GM +
Sbjct: 170 KGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRTAFIAAMNAKAKSLGMND 229

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI----ITNHNK 229
           T ++N++GL  +N +++ARD   +     + +P   K+ + R +            + N 
Sbjct: 230 THFENSTGLSSQN-VSSARDLVKMVNAAYQ-YPLIRKFSTDRSYEVNTGKRMLAYNSTNA 287

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L+ N   +I   KTG+   +G  +V        PIV V++       R   A  +   
Sbjct: 288 LVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRPIVMVLLDSFGKYSRFADASRVRNW 345


>gi|77411815|ref|ZP_00788150.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae
           CJB111]
 gi|77162150|gb|EAO73126.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae
           CJB111]
          Length = 393

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 74/310 (23%), Positives = 128/310 (41%), Gaps = 35/310 (11%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           KPK +SIVID NK  +      +  R PAS++KM TLY++FE L   K  LNT +  ++T
Sbjct: 45  KPK-ASIVID-NKGHILWEDNADLERDPASMSKMFTLYLLFEDLAKGKTSLNTTVTATET 102

Query: 110 AAT----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSN 164
                     S   +     +   + I      S+N  +      +S  +   F   ++ 
Sbjct: 103 DQAISKIYEISNNNIHAGVAYPIRELITMTAVPSSNVATIMIANHLSQNNPDAFIKRINE 162

Query: 165 KAKKIGMQNTIYKNASGL---------------HDKNQITTARDQAILGILLRKNFPQYY 209
            AKK+GM  T + N SG                ++   +TTARD +IL     K +P   
Sbjct: 163 TAKKLGMTKTHFYNPSGAVASAFNGLYSPKEYDNNATNVTTARDLSILTYHFLKKYPDIL 222

Query: 210 KYFSIRKF-----RYRNRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
            Y    +             T +N         +  +DG+KTG + ++ FN + + + ++
Sbjct: 223 NYTKYPEVKAMVGTPYEETFTTYNYSTPGAKFGLEGVDGLKTGSSPSAAFNALVTAKRQN 282

Query: 261 DPIVAVVMGMPTSQERDQKALE--LITSFLEKKTLKHQQTHRK-DNLSSTSLKKSLMIKK 317
             ++ VV+G+    ++D +      + + +EK     +    K   L +   KK +   K
Sbjct: 283 TRLITVVLGVGDWSDQDGEYYRHPFVNALVEKGFKDAKNISSKTPVLKAVKPKKEVTKTK 342

Query: 318 LKRTYSQFKK 327
             +   Q K+
Sbjct: 343 SIQEQPQTKE 352


>gi|167565134|ref|ZP_02358050.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           oklahomensis EO147]
          Length = 373

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 102/237 (43%), Gaps = 17/237 (7%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + +ID +  +    +  +   P AS+TK+MT  ++ +     K  L  +I V+     Q+
Sbjct: 124 AYMIDPHTGETLFDRNSQSVVPIASVTKLMTAMVVLDS----KAPLEERIEVTDDDRDQD 179

Query: 115 ---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S+L +   +  + +  +   +  S N  + A   +  G  + F   M+ KA+ +GM
Sbjct: 180 KFTGSRLAI--GSTLSRDDMLHIALMASENRAAAALSRYYPGGRQAFVDAMNQKARSLGM 237

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNH 227
            +T ++N +GL  K  ++TARD A +     + +P   +Y +  K+      R     + 
Sbjct: 238 IDTHFENPTGLS-KYNVSTARDLAKMVEAAYQ-YPLIRQYSTDLKYEVDTGRRTLYYHST 295

Query: 228 NKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           N LL  +  +I   KTGY R SG  +V         +V V++           A  L
Sbjct: 296 NILLRDEDWDIGVQKTGYIRESGICLVMQTTIDGREVVMVLLDSAGRHSDFFDAARL 352


>gi|239942599|ref|ZP_04694536.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           roseosporus NRRL 15998]
 gi|239989058|ref|ZP_04709722.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           roseosporus NRRL 11379]
 gi|291446061|ref|ZP_06585451.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces roseosporus NRRL
           15998]
 gi|291349008|gb|EFE75912.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces roseosporus NRRL
           15998]
          Length = 299

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 58/281 (20%), Positives = 107/281 (38%), Gaps = 25/281 (8%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLTKMMTL 86
            G +L  S    +  +     PK  +    +++    +    K  D  R   S TK+MT 
Sbjct: 21  AGAVLAGSAFASTAHAATPPAPKIVAKGGFLMNDGTGKTLFTKSADTRRATGSTTKIMTA 80

Query: 87  YIIFEYLQSKKLHLNTQIPV----SKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
            ++      K ++L +++ +    S    ++N S   L      T  Q +  L+  S  D
Sbjct: 81  LVVL---SQKNVNLKSKVTIQKAYSDYIVSKNASSARLIVGDKVTVGQLLYGLMLPSGCD 137

Query: 143 VSTAFGEFISGS------EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            + A  +            K F   M++ AK + ++NT + +  G+ + N  +T RD   
Sbjct: 138 AAYALADKFGSGSTRAARVKSFIGKMNSTAKSLKLKNTRFDSFDGIGNGNNYSTPRDLTK 197

Query: 197 LGILLRKN--FPQYYKY------FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
           +     KN  F    K        + +   YR    TN NKLL       G+KTG    +
Sbjct: 198 IASQAMKNSTFRSVVKTKSTKQKVTTKSGGYRYMSWTNTNKLLGSYSGATGVKTGSGPTA 257

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
            + +V +   K   ++  V+   +   R   A +++    +
Sbjct: 258 KYCLVFAATRKGKTVIGTVLTSTSEANRTADAKKMMDYGFK 298


>gi|104782270|ref|YP_608768.1| D-alanyl-D-alanine endopeptidase [Pseudomonas entomophila L48]
 gi|95111257|emb|CAK15977.1| D-alanyl-D-alanine endopeptidase; penicillin-binding proteins 7 and
           8 [Pseudomonas entomophila L48]
          Length = 308

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 110/249 (44%), Gaps = 16/249 (6%)

Query: 55  SSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAAT 112
           S+++ID+N NQ       D  R  AS+TK+MT  ++ +     KL ++  + ++      
Sbjct: 45  SALLIDLNTNQELYSSHADRVRPIASVTKLMTAMVVLDA----KLPMDEMLSMTIANNPE 100

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
                  ++  +     + +L  +  S N  + +      G    F   M+ KA+ +GM 
Sbjct: 101 MKGVYSRVRLGSELNRRETLLITLMSSENRAANSLANHYPGGYGAFIKAMNAKARSLGMS 160

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRII--TN 226
           +T Y   +GL   N ++TA+D A L +  RK +P   +  + R+    FR  N  +   N
Sbjct: 161 HTRYVEPTGLSTLN-VSTAQDLAKLLMASRK-YPMLSELSTTREKTVAFRKPNYTLGFRN 218

Query: 227 HNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            + L+NK   +I   KTG+T  +G  +V   R  + P+  V++           A   + 
Sbjct: 219 TDHLVNKSNWDIKLTKTGFTNEAGHCLVLLTRMDNRPVAMVILDAYGKYTHFADASR-MR 277

Query: 286 SFLEKKTLK 294
            +LE  + K
Sbjct: 278 QWLETGSTK 286


>gi|302540899|ref|ZP_07293241.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302458517|gb|EFL21610.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces
           himastatinicus ATCC 53653]
          Length = 319

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 62/261 (23%), Positives = 104/261 (39%), Gaps = 26/261 (9%)

Query: 52  PKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK-- 108
               + ++D + N+    K  D  R  AS+TK+MT  ++ +   ++ ++LN ++ V K  
Sbjct: 51  AAKGAYLLDNSANKKLWSKSPDTKRQMASITKLMTAVVVLD---TRGVNLNKKVTVKKAY 107

Query: 109 --TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS------EKKFAI 160
                T   S   LK+    T +Q +  ++  S  D + A  +            K F  
Sbjct: 108 LDYIRTSGGSAADLKQGDKLTVKQLLYGMLLPSGCDAAMALADTFGSGSTTAKRTKSFIS 167

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKN-QITTARDQAILGILLRKNFP--QYYKYFSIRK- 216
            M+ KA  +GM  T Y +  G+       TTARD + L      N       K     + 
Sbjct: 168 KMNKKADALGMTKTQYDSFDGISTHGANYTTARDLSKLARHALGNATLRTVVKSVGTEQK 227

Query: 217 -----FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
                 R R     + NKLL   +   GIKTG    +G  IV + +     +V V++G  
Sbjct: 228 APAANGRTRTYYWNSSNKLLGSYNGAIGIKTGTGTAAGKCIVFAAKRNGRTVVGVLLG-- 285

Query: 272 TSQERDQKALELITSFLEKKT 292
              +R   A +++      +T
Sbjct: 286 -DSKRYPDAKKMLDWAFNTRT 305


>gi|329941806|ref|ZP_08291071.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoaurantiacus
           M045]
 gi|329299523|gb|EGG43423.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoaurantiacus
           M045]
          Length = 398

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 93/262 (35%), Gaps = 23/262 (8%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLN 101
             A  +      S +V D +   +        P  PAS  K +    +   L +   H  
Sbjct: 65  PGAPAVPEVSALSWLVADADSGDVLAAHDAHRPLPPASTLKALFALTVLPALPADARH-- 122

Query: 102 TQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
               V +T         S + + E   +T       +   S ND        ++G  +  
Sbjct: 123 ---TVDETELRGIGPGSSLVGVAEGLTYTVADLWRGVFLSSGNDAVHVLA-AMNGGLEAT 178

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
              M +KA+ +G ++T   +  G     Q+++A D A+ G     + P + +Y +  +  
Sbjct: 179 TRRMRDKARALGARDTHVLSPDGYDRPGQVSSAYDLAVFGRAGLHD-PDFARYCATPEAY 237

Query: 219 YRNRIIT----NHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +          N N+LL           + G+K GYT  +G  ++ + R     +V  V+
Sbjct: 238 FPGYGQPYGIQNTNRLLTGADGVAPYPGLIGVKNGYTSGAGNTLIAAARRGGRTLVVTVL 297

Query: 269 GMPTSQ--ERDQKALELITSFL 288
              +    +  ++A  L+    
Sbjct: 298 HPRSGGGLQVYEEARALLDWGF 319


>gi|260662683|ref|ZP_05863577.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus fermentum
           28-3-CHN]
 gi|260552764|gb|EEX25763.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus fermentum
           28-3-CHN]
          Length = 417

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 61/277 (22%), Positives = 118/277 (42%), Gaps = 33/277 (11%)

Query: 30  LMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMT 85
           L+  + F +++  S  +  +A       ++I ID    Q+   K    RYP AS+ K++T
Sbjct: 12  LLVVVTFTTVLATSAGAVANASSTVDARAAITIDAETGQVLYEKNATKRYPIASVIKILT 71

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNP----SKLYLKEKTYFTTEQGILALITRSAN 141
           L +I + ++  KL  + +I +SK  A        S + L E   +T +  + +++  SA+
Sbjct: 72  LAVIEQDIEQGKLKWDQKIKISKEVAKVANDWRFSNVQLNEGESYTVKSLVESMMIVSAD 131

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------------Q 187
             + A     +GS   F   M   AK+ G+ +    N  GL + +               
Sbjct: 132 GSAEALALASAGSTAAFNQKMQAVAKEAGVTDAKIYNMIGLANGDLGEMRLKNVSKKAEN 191

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLLNKM------HN 236
             +A+D A +   L + +P   +    +   +     +   + N N +L +         
Sbjct: 192 QLSAKDVAKIARYLVEKYPSVLEITKQKFVNFQVSDSQQYEMVNINSMLPQNAAASTHGE 251

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           +DG+KTG T +SG+  V +  +    ++ VV+ +P  
Sbjct: 252 VDGLKTGMTDSSGYCFVGTGTFNGRRLITVVLKVPGE 288


>gi|325840226|ref|ZP_08166993.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sp. HGF1]
 gi|325490374|gb|EGC92699.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sp. HGF1]
          Length = 324

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 108/248 (43%), Gaps = 17/248 (6%)

Query: 56  SIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +I++D+  N++   +  +   YPASLTKMMT+ +  E + +  + ++           + 
Sbjct: 80  AILVDLTANEIIYERNPDVITYPASLTKMMTVLVAIENMPNTPMVVDVDF---NKLYEEG 136

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            +          + +  +   +  S  D +     +++GSE+ F  LM+ KA+++GM +T
Sbjct: 137 AALAGFSNGQVVSGDDLLYGTMLPSGADAAQTLANYVAGSEEAFVELMNQKARELGMTST 196

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-RYRNRIITNHNKLLNK 233
            + N +GLHD N  +T RD A+L      N  ++ + +S + +      ++   +++ ++
Sbjct: 197 HFTNVTGLHDDNHYSTVRDMAVLVKAALYN-DKFREIYSAKSYVTSTTPMLVFTSRMFDR 255

Query: 234 MH-------NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALE 282
           +         + G KTGYT  +   + +           V         T Q     A+ 
Sbjct: 256 LSSPTFGRVEMLGGKTGYTHEAQLCLASYATDGKHEYALVTTHADGSAYTPQYHVLDAVY 315

Query: 283 LITSFLEK 290
           L   FL +
Sbjct: 316 LYNYFLNQ 323


>gi|290962655|ref|YP_003493837.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei 87.22]
 gi|260652181|emb|CBG75313.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei
           87.22]
          Length = 399

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 92/249 (36%), Gaps = 18/249 (7%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S +V D    ++        R  PAS  K +    +   L +    L   +   + A 
Sbjct: 79  AVSWLVADAGSGEVLAAHDAHRRLPPASTLKTLFALTVLPGLPAG---LRHTVKSEELAG 135

Query: 112 TQNPSK-LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
               S  + +KE   +T       +   S ND        ++G  K     M  KA+ +G
Sbjct: 136 IGAGSSLVGVKENNTYTVADLWRGVFLSSGNDAVRVLAS-LNGGWKATTEQMQAKARALG 194

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITN 226
            ++T   +  G     Q+++A D A+ G    +N  ++  Y +     +     +  I N
Sbjct: 195 ARDTHVVSPDGYDAPGQVSSAYDLAVFGRAGLRNA-EFAGYCATATATFPAGGWSYGIQN 253

Query: 227 HNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD--QK 279
            N+LL          + G+K GYT N+G  +V + +     +V  VM   +       ++
Sbjct: 254 TNRLLTGAGVEPYPGLIGVKNGYTTNAGNTLVAAAKRGGRTLVVTVMRPESGGGHAVYEE 313

Query: 280 ALELITSFL 288
           A  L+    
Sbjct: 314 ARSLLDWGF 322


>gi|167574898|ref|ZP_02367772.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           oklahomensis C6786]
          Length = 373

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 102/237 (43%), Gaps = 17/237 (7%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + +ID +  +    +  +   P AS+TK+MT  ++ +     K  L  +I V+     Q+
Sbjct: 124 AYMIDPHTGETLFDRNSQSVVPIASVTKLMTAMVVLDS----KAPLEERIEVTDDDRDQD 179

Query: 115 ---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S+L +   +  + +  +   +  S N  + A   +  G  + F   M+ KA+ +GM
Sbjct: 180 KFTGSRLAI--GSTLSRDDMLHIALMASENRAAAALSRYYPGGRQAFVDAMNQKARSLGM 237

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNH 227
            +T ++N +GL  K  ++TARD A +     + +P   +Y +  K+      R     + 
Sbjct: 238 IDTHFENPTGLS-KYNVSTARDLAKMVEAAYQ-YPLIRQYSTDLKYEVDTGRRTLYYHST 295

Query: 228 NKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           N LL  +  +I   KTGY R SG  +V         +V V++           A  L
Sbjct: 296 NILLRDEDWDIGVQKTGYIRESGICLVMQTTIDGREVVMVLLDSAGRHSDFFDAARL 352


>gi|311108185|ref|YP_003981038.1| D-alanyl-D-alanine endopeptidase 2 [Achromobacter xylosoxidans A8]
 gi|310762874|gb|ADP18323.1| D-alanyl-D-alanine endopeptidase 2 [Achromobacter xylosoxidans A8]
          Length = 399

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 101/248 (40%), Gaps = 13/248 (5%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLN 101
           S+ +E  A    ++ V D+  + +   K +   R  AS++K+MT  ++ +      L ++
Sbjct: 141 SVRAEAAALRSTTAYVQDLETSTVIFAKNENVVRPIASISKLMTAVVVVDA----NLPMD 196

Query: 102 TQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
             + ++         +   L+  T  T    +   +  S N  + A G    G    F  
Sbjct: 197 EMLEITDEDVDGLKHTTSRLRVGTKLTRGDMLHLALMSSENRAANALGRHYPGGLPAFVA 256

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF--- 217
            M+ KA+ +GM +T +   +GL   + +++  D A L     +  P  ++Y +  ++   
Sbjct: 257 AMNAKAQALGMTSTRFIEPTGLS-SDNVSSPHDLARLLRAASQR-PLIHRYSTDTEYDVE 314

Query: 218 -RYRNRIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
              R +   N N L+ K   +I   KTGY   +G  +V   R     +  V++       
Sbjct: 315 VNNRTQTFRNTNLLVRKPDWDIKVSKTGYINEAGECLVMLARINGRDLAIVLLDSQGKLS 374

Query: 276 RDQKALEL 283
           R   A+ +
Sbjct: 375 RIGDAVRI 382


>gi|17987196|ref|NP_539830.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase
           fraction C) [Brucella melitensis bv. 1 str. 16M]
 gi|260564074|ref|ZP_05834560.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
           16M]
 gi|265991153|ref|ZP_06103710.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|17982866|gb|AAL52094.1| penicillin-binding protein 6 (d-alanyl-d-alanine carboxypeptidase
           fraction c) [Brucella melitensis bv. 1 str. 16M]
 gi|260154090|gb|EEW89182.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
           16M]
 gi|263001937|gb|EEZ14512.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
           str. Rev.1]
          Length = 205

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 114/190 (60%), Gaps = 6/190 (3%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMM 84
           R  +    + F + ++ +      A    S +V D +  +M G         PASL KMM
Sbjct: 20  RISRFFASVAFGTAVLCASG----AMASTSWVVFDADSGRMLGQDDASAQHAPASLAKMM 75

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TLY+ FE L++ +LH +  +P+SK AA++   KL+LK     +T   +  +I  SAND +
Sbjct: 76  TLYLTFEALKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAA 135

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-NQITTARDQAILGILLRK 203
           T  GE+++GSE  FA LM+ +A++IGM++TI+ N SGL    +Q+TTARD A+LG+ LR+
Sbjct: 136 TVMGEYLAGSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRR 195

Query: 204 NFPQYYKYFS 213
           +FP+ Y  FS
Sbjct: 196 DFPEEYALFS 205


>gi|332522713|ref|ZP_08398965.1| putative phage DNA packaging protein [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332313977|gb|EGJ26962.1| putative phage DNA packaging protein [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 396

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 126/290 (43%), Gaps = 39/290 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           KPK SSIV+D +   +         R PAS++K+ TLY++FE L   KL L+T+I  S T
Sbjct: 45  KPK-SSIVVDASNGDILWQDNALTVRDPASMSKVFTLYLLFEDLAKGKLTLDTKITASDT 103

Query: 110 --AATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK-KFAILMSN 164
             A ++    S   +     +     I  +   S+N  +     ++S ++   +   +++
Sbjct: 104 DQAISEIYEISNNKIVAGVEYPIRDLITMIAVPSSNAATVMVANYLSQNDASAYLDRINS 163

Query: 165 KAKKIGMQNTIYKNA--------SGLHDKNQI-------TTARDQAILGILLRKNFPQYY 209
            AK++GM +T + NA        +G ++           T+A D AIL     K +P   
Sbjct: 164 TAKRLGMLDTHFSNAGGAVAEAFNGYYNPKNYDKSAPNLTSAHDLAILVYHFLKKYPDIL 223

Query: 210 KYFSIRKF-----RYRNRIITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKD 260
            Y +                 ++N  L         +DG+KTG + ++ FN + + +   
Sbjct: 224 NYTNTSTVKTMIGTPYEETFHSYNYSLPGDKYGIKGVDGLKTGSSPSAAFNAMVTAKRGK 283

Query: 261 DPIVAVVMGMPTSQERDQK------ALELITSFLEKKTLKHQQTHRKDNL 304
             ++ +VMG+    ++D +      A  L       K LK+ +T + DNL
Sbjct: 284 ARVITIVMGVGDWSDQDGEFYRHPFANALTEHGF--KILKNGKTQKLDNL 331


>gi|237745522|ref|ZP_04576002.1| murein-dd-endopeptidase, serine peptidase, merops family s11
           [Oxalobacter formigenes HOxBLS]
 gi|229376873|gb|EEO26964.1| murein-dd-endopeptidase, serine peptidase, merops family s11
           [Oxalobacter formigenes HOxBLS]
          Length = 431

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 63/281 (22%), Positives = 119/281 (42%), Gaps = 13/281 (4%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           Y  + ++R++ ++ +  F  +  +    +  +    +++V+D +  ++   K  D     
Sbjct: 150 YRKVSLRRSVPVVPRYSFGDLAGLKNTYDPLSLKSNAALVLDESNLEILFEKNSDIALPM 209

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALI 136
           AS+TK+MT  ++ E +Q     +N  + +++     Q  +   L+  T  T    +   +
Sbjct: 210 ASITKLMTALVVVESMQD----MNEILEITEEDVDVQKHTSSRLRVGTKMTRANLLHLAL 265

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S N  + A G    G    F   M+ KA+ +GM ++ Y ++SGL     I +ARD A 
Sbjct: 266 MSSENRAAAALGRNYPGGISAFVNAMNIKAQVLGMSDSRYVDSSGLS-SGNIASARDLAK 324

Query: 197 LGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFN 251
           L +   + +P   KY +   +      R     N N L+ N   +I   KTGY   +G  
Sbjct: 325 LVMAAAQ-YPILRKYSTDTYYSIDDGLREMHYGNTNGLVHNPEWHIRLQKTGYISEAGQC 383

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +V        PIV V +       R   A  + +   + +T
Sbjct: 384 LVMQAVINGRPIVMVFLDSKGKGARLADAQRIRSWLTQSET 424


>gi|195978798|ref|YP_002124042.1| D-alanyl-D-alanine carboxypeptidase precursor DacA.3 [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|195975503|gb|ACG63029.1| D-alanyl-D-alanine carboxypeptidase precursor DacA.3 [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
          Length = 393

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 69/278 (24%), Positives = 123/278 (44%), Gaps = 31/278 (11%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           +SIV+D   +++      D PR PAS++KM TLYI+FE L   K+ L+T I  ++T    
Sbjct: 45  ASIVVDAKTSEILWQDNIDMPRDPASMSKMFTLYILFEELAKGKVTLDTTITATETDQAI 104

Query: 113 ---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK-KFAILMSNKAKK 168
                 S   +     +     I+  +  S+N  +     ++S ++   F   ++  AK+
Sbjct: 105 SKIYEISNNNIVAGVAYPIRDLIIMTVVPSSNAATVMIANYLSNNDASAFIDRINKTAKE 164

Query: 169 IGMQNTIYKNASGLHDK---------------NQITTARDQAILGILLRKNFPQYYKYFS 213
           +GM NT + NASG   +               + ITTARD A L      N+P    + +
Sbjct: 165 LGMTNTHFSNASGAIAQAFQGYYLPEKYDLTASNITTARDFATLIYYFLTNYPSILDFTN 224

Query: 214 IRKFRYR-----NRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
               R            ++N  L      +  +DG+KTG + ++ FN V + +  +  ++
Sbjct: 225 QTVVRTMVGTPYEEEFHSYNHSLPDGKFGIEGVDGMKTGSSPSAAFNAVVTAKRGNTRLI 284

Query: 265 AVVMGMPTSQERDQKA-LELITSFLEKKTLKHQQTHRK 301
            VV+G+    +++ +       + L +K  K  +T  K
Sbjct: 285 TVVLGVGDWSDQNGEFYRHPFINALTEKAFKDSKTLTK 322


>gi|332978541|gb|EGK15250.1| D-alanyl-D-alanine endopeptidase PbpG [Psychrobacter sp.
           1501(2011)]
          Length = 343

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 106/250 (42%), Gaps = 20/250 (8%)

Query: 57  IVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKK--LHLNTQIPVSKTAATQ 113
           IV+DV   +    K  +  R  AS+TK+MT  ++ +     +  + L+ +  V    A+ 
Sbjct: 101 IVLDVATGKPLYEKNADIARPIASITKIMTAMVVLDAGLDMREEIKLDPEDFVGPKRASS 160

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
                 LK        + +L  + +S N  + +      G    F   M+ KA+ +GM +
Sbjct: 161 -----RLKSGDRMNRAELLLMALMKSENPAAKSLARNYPGGYDAFMRAMNAKARSLGMNS 215

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-------RNRIIT- 225
             + + +GL DK  + +  D A +       +    ++ + + + +        NR    
Sbjct: 216 AFFGDPTGL-DKRNVASPMDLAKMVQAA-GQYEVIRRFSTTKNYDFYVANYTDGNRTYPA 273

Query: 226 -NHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            N +KL+       GI KTG+   +G  +V   ++ + P + V++G  +S  R   A  +
Sbjct: 274 SNTSKLVRGGTYPIGISKTGFINEAGQCVVMETQFNNRPAIIVILGADSSNTRWNDAENI 333

Query: 284 ITSFLEKKTL 293
           + +   ++T+
Sbjct: 334 LHNLALRRTV 343


>gi|225871201|ref|YP_002747148.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp. equi
           4047]
 gi|225700605|emb|CAW95136.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus equi
           subsp. equi 4047]
          Length = 393

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 69/278 (24%), Positives = 123/278 (44%), Gaps = 31/278 (11%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           +SIV+D   +++      D PR PAS++KM TLYI+FE L   K+ L+T I  ++T    
Sbjct: 45  ASIVVDAKTSEILWQDNIDMPRDPASMSKMFTLYILFEELAKGKVTLDTTITATETDQAI 104

Query: 113 ---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK-KFAILMSNKAKK 168
                 S   +     +     I+  +  S+N  +     ++S ++   F   ++  AK+
Sbjct: 105 SKIYEISNNNIVAGVAYPIRDLIIMTVVPSSNAATVMIANYLSNNDASAFIDRINKTAKE 164

Query: 169 IGMQNTIYKNASGLHDK---------------NQITTARDQAILGILLRKNFPQYYKYFS 213
           +GM NT + NASG   +               + ITTARD A L      N+P    + +
Sbjct: 165 LGMTNTHFSNASGAIAQAFQGYYLPEKYDLTASNITTARDFATLIYYFLTNYPSILDFTN 224

Query: 214 IRKFRYR-----NRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
               R            ++N  L      +  +DG+KTG + ++ FN V + +  +  ++
Sbjct: 225 QTVVRTMVGTPYEEEFHSYNHSLPDGKFGIEGVDGMKTGSSPSAAFNAVVTAKRGNTRLI 284

Query: 265 AVVMGMPTSQERDQKA-LELITSFLEKKTLKHQQTHRK 301
            VV+G+    +++ +       + L +K  K  +T  K
Sbjct: 285 TVVLGVGDWSDQNGEFYRHPFINALTEKAFKDSKTLTK 322


>gi|295837711|ref|ZP_06824644.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. SPB74]
 gi|197695913|gb|EDY42846.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. SPB74]
          Length = 308

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 113/287 (39%), Gaps = 26/287 (9%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
            G +L   ++  + A+   +     + ++D +  +    K  D  R  AS TK+MT  ++
Sbjct: 17  AGAVLVAPLVGTAQAASAPSVSASGAYLLDTSSGKALYSKAADTKREMASTTKVMTAAVV 76

Query: 90  FEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
            +   +K L+L+ ++ + +        +  S   L+     T  Q + A +  S  D + 
Sbjct: 77  LD---TKGLNLDKKVTIQQAYRDYVVKKGASTADLRTGDKVTVRQLLYAALLPSGCDAAY 133

Query: 146 AFGEFISGSEKK------FAILMSNKAKKIGMQNTIYKNASGLHDKN-QITTARDQAILG 198
           A  +     +        F   M+ KAK + M NT Y +  G+  K+   TT RD ++L 
Sbjct: 134 ALADTFGTGKTATARTADFIAKMNAKAKSLKMANTSYDSFDGIPTKSKNYTTPRDASLLA 193

Query: 199 ILLRKN--FPQYYKYFSIRKF------RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
               KN  F    K  S ++         R     N NKLL       GIKTG    SG 
Sbjct: 194 QHALKNSTFRTVVKAKSTKQTATASNGNTRTYTWYNTNKLLGSYDGAIGIKTGTASGSGP 253

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQ 297
            +V +       +  V++       R + A +++    +  + +  Q
Sbjct: 254 CLVFAATRHGRTVAGVIL---NDSNRFEDAAKIMDYAFKSHSAQAMQ 297


>gi|227326961|ref|ZP_03830985.1| D-alanyl-D-alanine endopeptidase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 315

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 102/254 (40%), Gaps = 17/254 (6%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLN 101
           S  +        S++V+D+  N +      +   P AS+TK+MT  ++ +  Q     L+
Sbjct: 33  SAGTAHQEIASGSAMVVDLRDNHILYSSNPDVVVPIASVTKLMTALVVLDANQP----LD 88

Query: 102 TQ--IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
               + +S+T          ++  +  +    +L  +  S N  + +      G  + F 
Sbjct: 89  EIISVDISQT-KEMKGVYSRVRLNSEISRRDMLLLALMSSENRAAASLAHHYPGGYQAFI 147

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             M+ KA+ +GM +T Y   +GL   N ++TARD   L ++  K +P   +  + ++   
Sbjct: 148 RAMNAKARALGMAHTRYVEPTGLSI-NNVSTARDLTKL-LIASKQYPLLGQLSTTQEKTA 205

Query: 220 R------NRIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
                  ++   N N L+ K   +I   KTG+T  +G  +V        P+  VV+    
Sbjct: 206 TFSHPAYSQPFRNTNHLVYKADWSIQLTKTGFTNQAGHCLVMRTVINQRPVALVVLDAFG 265

Query: 273 SQERDQKALELITS 286
                  A  L   
Sbjct: 266 KYTHFADANRLRKW 279


>gi|145535902|ref|XP_001453684.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124421406|emb|CAK86287.1| unnamed protein product [Paramecium tetraurelia]
          Length = 395

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 60/273 (21%), Positives = 116/273 (42%), Gaps = 17/273 (6%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKM 83
           +RN +++ + + LS   I     + A+   S  +I+     +     ++     AS+TK+
Sbjct: 126 KRNPRILPRHIPLS-PSIPFGPPITAQ---SWCIINGKDGSLLAGFNEKFKCQIASITKI 181

Query: 84  MTLYIIFEYLQSKKLHLN-TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           MT ++  +++    L L+ T   V + A     +   L+          +  L+  S ND
Sbjct: 182 MTCFLSLKFVSLISLDLDNTYFTVPEAAENVGGTSAQLQTGDQLNLRDLLYGLMLPSGND 241

Query: 143 VSTAFGEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
            +         +    F   M++ AK+ G+++T Y N  GL+ K   ++A D  IL    
Sbjct: 242 AAVTLKHNFEQTTGINFIDEMNSCAKEFGLKSTQYMNPHGLYHKFNYSSALDIGILCFQA 301

Query: 202 RKNF-------PQYYKYFSIRKF-RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            +N         + Y    I KF   +  +  N NKLL   +   G+KTG T+ +G  +V
Sbjct: 302 LQNEHFANIVKTKIYFSEIIDKFGNIKEILWENTNKLL--DNGFQGVKTGQTKEAGPCVV 359

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
                 ++  + V++   ++  R   A++L+  
Sbjct: 360 EYYLDNNNSYIIVLLNCKSTDYRWYDAIQLLDW 392


>gi|265994989|ref|ZP_06107546.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
           str. Ether]
 gi|265999456|ref|ZP_06111697.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
           str. 63/9]
 gi|262766102|gb|EEZ11891.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
           str. Ether]
 gi|263094078|gb|EEZ18000.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
           str. 63/9]
          Length = 205

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 114/190 (60%), Gaps = 6/190 (3%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMM 84
           R  +    + F + ++ +      A    S +V D +  +M G         PASL KMM
Sbjct: 20  RISRFFASVAFGTAVLCASG----AMASTSWVVFDADSGRMLGQDDASAQHAPASLAKMM 75

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TLY+ FE L++ +LH +  +P+SK AA++   KL+LK     +T   +  +I  SAND +
Sbjct: 76  TLYLTFEALKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAA 135

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-NQITTARDQAILGILLRK 203
           T  GE+++GSE  FA LM+ +A++IGM++TI+ N SGL    +Q+TTARD A+LG+ LR+
Sbjct: 136 TVMGEYLAGSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRR 195

Query: 204 NFPQYYKYFS 213
           +FP+ Y  FS
Sbjct: 196 DFPEEYALFS 205


>gi|324497314|gb|ADY39464.1| D-alanyl-D-alanine endopeptidase [bacterium enrichment culture
           clone P69-9E]
          Length = 258

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 96/234 (41%), Gaps = 15/234 (6%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAATQNPSKLY 119
           N N++      D  R  AS+TK+MT  ++ +      L L+ ++ V              
Sbjct: 1   NTNKVIYASHPDLVRPIASITKLMTAMVVLDAH----LPLDEKLKVDISHTPEMKGIYSR 56

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           ++  +  + +  +L  +  S N  + +      G    F   M+ KAK +GM NT Y   
Sbjct: 57  VRLNSEISRKNMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAKALGMTNTHYVEP 116

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIIT----NHNKLLNK 233
           +GL   N ++TARD   L ++  K +P   +  + R+    + N   T    N N L+ +
Sbjct: 117 TGLSI-NNVSTARDLTKL-LIASKQYPLIGQLSTTREEMATFANPAYTLPFRNTNHLVYR 174

Query: 234 M-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
              NI   KTG+T  +G  +V    +   P+  VVM           A  L T 
Sbjct: 175 DNWNIQLTKTGFTNAAGHCLVMRTVFNGKPVALVVMDAFGKYTHFADASRLRTW 228


>gi|84498026|ref|ZP_00996823.1| probable penicillin-binding protein dacb1
           (d-alanyl-d-alaninecarboxypeptidase) (dd-peptidase)
           (dd-carboxypeptidase) [Janibacter sp. HTCC2649]
 gi|84381526|gb|EAP97409.1| probable penicillin-binding protein dacb1
           (d-alanyl-d-alaninecarboxypeptidase) (dd-peptidase)
           (dd-carboxypeptidase) [Janibacter sp. HTCC2649]
          Length = 416

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 100/264 (37%), Gaps = 24/264 (9%)

Query: 40  IMISMASELHAKPKYS---SIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQS 95
           +++   + + A P  S    ++ D +  ++   K       PAS  K +T   +   L+ 
Sbjct: 72  VIVDTPTGVPAPPDVSDVAWLIADADTGEILAAKNPHAHLLPASTLKTLTAIHLLPRLKP 131

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
             +   T +      +    +++ +     +T  Q   AL+  S ND +    E ++G  
Sbjct: 132 TAVRTATTLE-----SNAEGTRVGMVAGGTYTAAQLFQALVMSSGNDAAYGLAE-LNGGL 185

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
            K    ++  A ++G  +T+  + SGL    Q ++A D A+ G     N P Y K  S +
Sbjct: 186 AKTVTELNGLAAELGAHDTVVADPSGLDSPGQYSSAYDLALFGRAAIAN-PAYLKLASTK 244

Query: 216 KFRYR-----------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
              +            +  I NHN+LL       G+K G+T+ +    + +        +
Sbjct: 245 TATFPAATSRSSRSRSSYAIGNHNRLLWNYPGTIGVKNGFTKAAHRTFIGAATRGGKTYI 304

Query: 265 AVVMGMPTSQERDQKALELITSFL 288
              M    S  R   A  L+    
Sbjct: 305 VTEMYGTGSSWRP--AASLLDWAF 326


>gi|255066285|ref|ZP_05318140.1| penicilin-binding protein [Neisseria sicca ATCC 29256]
 gi|255049495|gb|EET44959.1| penicilin-binding protein [Neisseria sicca ATCC 29256]
          Length = 313

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 60/259 (23%), Positives = 117/259 (45%), Gaps = 18/259 (6%)

Query: 45  ASELHAKP---KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHL 100
           A  + A P     S+++ +    ++   K  +   P AS++K+M+  ++ +     +L +
Sbjct: 62  AQAMMAGPLLTSQSALIFNNKTGEILYQKNADRVMPIASISKLMSAMVVLDA----RLDM 117

Query: 101 NTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           N +I ++     +   +   L   T  T  + +   +  S N  + A G    G    F 
Sbjct: 118 NERITITSDEIDRLKGTGSRLAVGTTLTRGELLHLSLMSSENRATHALGRTYPGGMSAFV 177

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK-----YFSI 214
             M+ KA+ +GM ++ +   +GL+ +N ++TA D   +     K +P   K     Y S+
Sbjct: 178 AAMNAKAQSLGMHSSRFYEPTGLNFQN-VSTANDLNRMVAAASK-YPLIRKNTTSNYGSV 235

Query: 215 RKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                R +   N N L+     NI+  KTGY R +G ++V     ++ PI  V++  PTS
Sbjct: 236 WTANGR-QNYKNSNALVREGSWNIELQKTGYIREAGRSMVVKANVQNQPITIVLLNSPTS 294

Query: 274 QERDQKALELITSFLEKKT 292
             R   A ++ +  L++++
Sbjct: 295 TTRVNDARKIESWMLQRRS 313


>gi|330467947|ref|YP_004405690.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Verrucosispora
           maris AB-18-032]
 gi|328810918|gb|AEB45090.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Verrucosispora
           maris AB-18-032]
          Length = 420

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 93/248 (37%), Gaps = 16/248 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S +V D++  ++ G         PAS+ K++    +   L   ++     I       
Sbjct: 90  ATSWVVADLDTGEVLGGCGPHEYATPASVQKLLLAATMLPRLDPAEV---VTITAGDLDI 146

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE--FISGSEKKFAILMSNKAKKI 169
               S + L     +  E   L L+ RS N+V+ A       +         M+ +A+++
Sbjct: 147 EPGSSAVGLVAGGRYRIETLWLGLLLRSGNEVANALARLGGGADGMAGGLRAMNEQARQL 206

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF--------RYRN 221
           G   T     SGL    Q T+A D A++      +   + +Y + R+         R + 
Sbjct: 207 GAYQTHAATPSGLDGPGQFTSAYDLALIARACFDD-EHFRRYVATREADIPAQPKQRAKG 265

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-DQKA 280
             I N N+LL +     G KTGYT  +    V +       +V  ++G     +R  Q+ 
Sbjct: 266 FTIDNDNQLLYRYPGALGGKTGYTDLARHTYVGAAERNGRRLVVTLLGADVIDQRGWQQG 325

Query: 281 LELITSFL 288
             L+    
Sbjct: 326 AALLDWGF 333


>gi|229591365|ref|YP_002873484.1| D-alanyl-D-alanine endopeptidase [Pseudomonas fluorescens SBW25]
 gi|229363231|emb|CAY50317.1| penicillin-binding protein 7 precursor [Pseudomonas fluorescens
           SBW25]
          Length = 307

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 113/278 (40%), Gaps = 23/278 (8%)

Query: 27  NIQLMGKILFLSII--MISMASELHAK--------PKYSSIVIDVNKNQMTGFKQDEPRY 76
            I+L    LF +        A    A            S++++D+  N++      +   
Sbjct: 2   KIRLSIISLFFAFTGNFTHAAETTQAPRDTSKLQIASGSAMLVDLQTNKVIYSSNPDVVV 61

Query: 77  P-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           P AS++K+MT  I+ E  Q+   +++  I  +            +K  +    ++ +L  
Sbjct: 62  PIASVSKLMTGLIVLEAKQNMDEYIDINITDTPE---MKGVFSRVKIGSQMPRKEMLLIA 118

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S N  + +      G    F   M+ KAK +GM +T Y   +GL   N ++TARD +
Sbjct: 119 LMSSENRAAASLAHHYPGGYAAFIAAMNAKAKALGMTSTHYVEPTGLSIHN-VSTARDLS 177

Query: 196 ILGILLRKNFPQYYKYFSIRK----FRYRNRII--TNHNKLLNK-MHNIDGIKTGYTRNS 248
            L    R ++P   +  + ++    FR  N  +  +N + L+N+   +I   KTG+T  +
Sbjct: 178 KLLAAAR-HYPLLSQLSTTKEKTVSFRKPNYTLGFSNTDHLINRANWDIKLTKTGFTNQA 236

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           G  +V      + P+  V++           A  +   
Sbjct: 237 GHCLVLVTSMGNRPVSLVILDAFGKFTHFADASRIRNW 274


>gi|28895131|ref|NP_801481.1| D,D-carboxypeptidase, penicillin-binding protein [Streptococcus
           pyogenes SSI-1]
 gi|28810376|dbj|BAC63314.1| putative D,D-carboxypeptidase, penicillin-binding protein
           [Streptococcus pyogenes SSI-1]
          Length = 374

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 129/294 (43%), Gaps = 37/294 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT---- 109
           SSIV+D N + +      D PR PAS++KM TLYI+FE L   K+ ++T I  + T    
Sbjct: 26  SSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTITATPTDQAI 85

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK-KFAILMSNKAKK 168
           A     S   +     +     I      S+N  +     ++S ++   F   ++  AK+
Sbjct: 86  ANIYEISNNNIVAGVAYPIRDLITLTAVPSSNAATVMIANYLSNNDASAFIDRINATAKQ 145

Query: 169 IGMQNTIYKNASGLHDK---------------NQITTARDQAILGILLRKNFPQYYKYF- 212
           +GM NT + NASG   +               + ITTARD + L     K +P+   +  
Sbjct: 146 LGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPEIISFTN 205

Query: 213 -----SIRKFRYRNRIITNHNKLLN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
                ++    Y     T ++ L +    M  +DG+KTG + ++ FN + + +     ++
Sbjct: 206 KSVVHTMVGTPYEEEFHTYNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKRGKTRLI 265

Query: 265 AVVMGMPTSQERDQKALE--LITSFLEK-----KTLKHQQTHRKDNLSSTSLKK 311
            +VMG+    +++ +      + +  EK     KTL  +   + + L   + K+
Sbjct: 266 TIVMGVGDWSDQNGEFYRHPFVNALTEKGFKDSKTLSKKARQKLEKLVPQTKKE 319


>gi|317405883|gb|EFV86165.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Achromobacter
           xylosoxidans C54]
          Length = 260

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 102/249 (40%), Gaps = 13/249 (5%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHL 100
           +S+ +E  A    ++ V D+  + +   K +   R  AS++K+MT  ++ +  Q     +
Sbjct: 1   MSVRAEAAALRSSTAYVQDLATSTVIFAKNENVVRPIASISKLMTAVVVVDANQP----M 56

Query: 101 NTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           +  + ++         +   L+  T  +    +   +  S N  + A G    G    F 
Sbjct: 57  DEMLEITDEDIDGLKHTTSRLRVGTKLSRGDMLHLALMSSENRAANALGRHYPGGLPAFV 116

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-- 217
             M+ KA+ +GM +T +   +GL   + +++  D A L     +  P  ++Y +  ++  
Sbjct: 117 AAMNAKAQSLGMTSTHFIEPTGLS-SDNVSSPHDLARLLRAASQR-PLIHRYSTDTEYDV 174

Query: 218 --RYRNRIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
               R +   N N L+ K   +I   KTGY   +G  +V   R     +  V++      
Sbjct: 175 EINNRTQTFRNTNLLVRKPDWDIKVSKTGYINEAGECLVMLARINGRDLAIVLLDSQGKL 234

Query: 275 ERDQKALEL 283
            R   A+ +
Sbjct: 235 SRIGDAVRI 243


>gi|331001799|ref|ZP_08325321.1| hypothetical protein HMPREF0491_00183 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412773|gb|EGG92156.1| hypothetical protein HMPREF0491_00183 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 327

 Score =  171 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 102/249 (40%), Gaps = 25/249 (10%)

Query: 56  SIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA--T 112
           SI++   +  +   K    R YPAS TK+MT  +  +Y      +L+ +I V + +    
Sbjct: 81  SIILVSTEGSLLASKAATKRMYPASTTKVMTALVALKYG-----NLSDEITVPEESVISE 135

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S   L      T ++ +  L+  S ND + A    I GS   F  +M+++AK+IG  
Sbjct: 136 AGASLAGLNPGDKLTLDELLYGLMLPSGNDAANAIAVHIGGSVDNFVRMMNDEAKRIGAV 195

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR---------NRI 223
           +T + NA GL D+N  TTA D  ++     K+  ++  Y     +             + 
Sbjct: 196 DTNFMNAHGLSDENHYTTAYDLYLIFNEALKDS-RFLNYAGTASYNVSYIAADGSEVTKS 254

Query: 224 ITNHNKLLNKMHNIDG------IKTGYTRNSGFNIV-TSLRYKDDPIVAVVMGMPTSQER 276
             N N+ L       G       KTG T  +G  +V  S   +    ++VV+      + 
Sbjct: 255 WRNGNRYLTGQVATPGGLVVEAGKTGTTLAAGSCLVICSENKEGSKYISVVLKSKNRADL 314

Query: 277 DQKALELIT 285
                +L+ 
Sbjct: 315 YDNMSKLLF 323


>gi|297537475|ref|YP_003673244.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylotenera
           sp. 301]
 gi|297256822|gb|ADI28667.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylotenera
           sp. 301]
          Length = 343

 Score =  171 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 98/240 (40%), Gaps = 15/240 (6%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ- 113
           ++VI+    ++   K  ++    AS+TK+MT  ++ +      L ++  + +        
Sbjct: 95  ALVINQLTGEIIYAKNTNQSTPIASVTKLMTAMVMLDAH----LPMDDLLFIGDEDVDYL 150

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +   L   T  T  + +   +  S N  ++A      G    F + M+ KA+ +GM++
Sbjct: 151 KRTHSRLNVGTQLTRGELLQLALMSSENRAASALARNYPGGIGAFMVAMNRKAEVLGMKS 210

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK------FRYRNRIITNH 227
           T + +A+GL D N ++TA D   +      ++P+  +  +          R       N 
Sbjct: 211 TRFYDATGL-DSNNVSTAEDLVKMVNAA-YHYPEIRQVTTTASQEITLYGRENPINFVNT 268

Query: 228 NKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           N L+     + G+ KTG+   +G  +V        P++ V++     Q R   A  +   
Sbjct: 269 NSLVRGSDWVIGLSKTGFINEAGRCLVMQAEISGQPMIIVLLDSAGKQSRIGDANRIRKW 328


>gi|77459922|ref|YP_349429.1| D-alanyl-D-alanine endopeptidase [Pseudomonas fluorescens Pf0-1]
 gi|77383925|gb|ABA75438.1| penicillin-binding protein 7 precursor [Pseudomonas fluorescens
           Pf0-1]
          Length = 312

 Score =  171 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 60/280 (21%), Positives = 125/280 (44%), Gaps = 27/280 (9%)

Query: 28  IQLMGKILFLSIIMISM---ASELHAKPK---------YSSIVIDVNKNQMTGFKQDEPR 75
           + ++  +   S  +++    A+E  A P+          S++++D+  N++      +  
Sbjct: 5   LSILSLVFAFSGTLLTPTVNAAETTAAPRDASQLKIASGSALLMDLQTNKVIYSSNPDVV 64

Query: 76  YP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-PSKLYLKEKTYFTTEQGIL 133
            P AS++K+MT  ++ E  Q+    ++  + +S T   +   S++ L+  +     + +L
Sbjct: 65  VPIASVSKLMTGLVVVEAHQNMDEWID--VDISHTPEMKGVFSRVKLR--SELPRREMLL 120

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
             +  S N  + +      G    F   M+ KAK +GM +T +   +GL ++N ++TARD
Sbjct: 121 IALMSSENRAAASLAHHYPGGYAAFIAAMNAKAKALGMTSTHFVEPTGLSERN-VSTARD 179

Query: 194 QAILGILLRKNFPQYYKYFSIRK----FRYRNRII--TNHNKLLNK-MHNIDGIKTGYTR 246
            + L +   K  P   +  + ++    FR  N  +   N + L+NK   +I   KTG+T 
Sbjct: 180 LSKLLVAAHKQ-PLLIELTTTKEKTVSFRKPNYTLGFRNTDHLVNKADWDIRITKTGFTN 238

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            +G  +V   R  + P+  V++           A  + + 
Sbjct: 239 PAGHCLVLVTRMANRPVALVILDAFGKYTHFADASRIRSW 278


>gi|21909749|ref|NP_664017.1| putative DD-carboxypeptidase [Streptococcus pyogenes MGAS315]
 gi|21903933|gb|AAM78820.1| putative DD-carboxypeptidase [Streptococcus pyogenes MGAS315]
          Length = 393

 Score =  171 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 78/337 (23%), Positives = 144/337 (42%), Gaps = 51/337 (15%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHA-------------KPKYSSIVIDVNKNQMTGFKQ 71
           +R I  +   +  S++ +  A ++               +PK SSIV+D N + +     
Sbjct: 3   KRIILTIFTFICFSMMPLVHAEDVMDITRQAGYTVSEVNRPK-SSIVVDANSSDILWQDN 61

Query: 72  -DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYF 126
            D PR PAS++KM TLYI+FE L   K+ ++T I  + T    A     S   +     +
Sbjct: 62  IDIPRDPASMSKMFTLYILFEELAKGKITMDTTITATPTDQAIANIYEISNNNIVAGVAY 121

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLHDK 185
                I      S+N  +     ++S ++   F   ++  AK++GM NT + NASG   +
Sbjct: 122 PIRDLITLTAVPSSNAATVMIANYLSNNDASAFIDRINATAKQLGMTNTHFSNASGAAAQ 181

Query: 186 ---------------NQITTARDQAILGILLRKNFPQYYKYF------SIRKFRYRNRII 224
                          + ITTARD + L     K +P+   +       ++    Y     
Sbjct: 182 AFQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPEIISFTNKSVVHTMVGTPYEEEFH 241

Query: 225 TNHNKLLN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           T ++ L +    M  +DG+KTG + ++ FN + + +     ++ +VMG+    +++ +  
Sbjct: 242 TYNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKRGKTRLITIVMGVGDWSDQNGEFY 301

Query: 282 E--LITSFLEK-----KTLKHQQTHRKDNLSSTSLKK 311
               + +  EK     KTL  +   + + L   + K+
Sbjct: 302 RHPFVNALTEKGFKDSKTLSKKARQKLEKLVPQTKKE 338


>gi|324120501|dbj|BAJ78640.1| penicillin binding protein 4 [Staphylococcus epidermidis]
          Length = 411

 Score =  171 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 125/311 (40%), Gaps = 33/311 (10%)

Query: 58  VIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--- 113
           V+     Q+   + +D+   PAS TK+MT+ +I+E +   ++ L  ++ +S+        
Sbjct: 48  VVTTTNGQILYKYHKDKKVDPASTTKLMTMLVIYEDINHSEMRLKDKVKISERYQKMSQL 107

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
            N +   LK+   +T EQ +      S+N  +    E I G   KF   M+ +A+ +GM 
Sbjct: 108 PNLTTFPLKKGQTYTIEQLLKQAALNSSNAATLVLAEHIDGDISKFTDRMNREAQLLGMN 167

Query: 173 NTIYKNASGLHDK--------------NQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
            T + N SG  +K              +  TTA D AIL   L + +P   K   +    
Sbjct: 168 QTHFTNPSGADNKIIKPYEPKKYKDETSSYTTANDMAILTNHLLRKYPNILKMTQLETDT 227

Query: 219 YRNRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG---MP 271
             ++ + N N  L      M N+DG+KTG T   G+N+  + +     +   +      P
Sbjct: 228 QYHQQLHNTNLSLPHQSLGMKNVDGLKTG-TSKKGYNLALTAKKDQLRVNTNLFNIQPYP 286

Query: 272 TSQ---ERDQKALELITSFLEKKTLKH---QQTHRKDNLSSTSLKKSLMIKKLKRTYSQF 325
           + +    R + A  L     E  T +    +  H+ D  +    +    +     +  + 
Sbjct: 287 SEKAKFARHKVANALTQHAFENYTYRKVISKGVHQIDGKTYNVKEDLYDVVPKDNSNYEL 346

Query: 326 KKIDAKAHSTQ 336
           +  D    S +
Sbjct: 347 EISDKNHLSVK 357


>gi|42781623|ref|NP_978870.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           ATCC 10987]
 gi|42737546|gb|AAS41478.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           ATCC 10987]
          Length = 253

 Score =  171 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 115/242 (47%), Gaps = 16/242 (6%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYI 88
           ++  ++ L   +      + AK   S+I+ID +  ++   K +E P   A+L+K+MT YI
Sbjct: 15  VITVLIVLYFYLYVNGPIIQAK---SAILIDAHSGEVVYTKNEETPIQSATLSKLMTEYI 71

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
             E L    + L+  + +S        S + +  K   T    + AL+    N  + A  
Sbjct: 72  ALEQLNEGNIQLDEVVKISNEVFQAETSPIQVTSKDKTTVRDLLHALLLTGNNRSALALA 131

Query: 149 EFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDKNQI---TTARDQAILGILLRKN 204
           E I+G+E  F  LM+ KAK++ +   + + NA+G+++       TTA + A L   L  +
Sbjct: 132 EHIAGNEDNFTQLMNEKAKRLKLSQPSPFLNATGMNNDTNKLSTTTAIEVAKLATELVTD 191

Query: 205 FPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGYTRNSGFNIVTSL 256
           FP       +    F +++  + N NK++       K+  +DG++T ++ N  ++ V++ 
Sbjct: 192 FPDVLNVTKLTSYQFSFKDTKVFNTNKMIYSLNKNIKLQGVDGLQTSFSTNGNYSFVSTA 251

Query: 257 RY 258
           + 
Sbjct: 252 KR 253


>gi|330827968|ref|YP_004390920.1| D-alanyl-D-alanine carboxypeptidase family protein [Aeromonas
           veronii B565]
 gi|328803104|gb|AEB48303.1| D-alanyl-D-alanine carboxypeptidase family protein [Aeromonas
           veronii B565]
          Length = 284

 Score =  171 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 110/253 (43%), Gaps = 15/253 (5%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           + +V +    ++   +      P ASLTK+MT  ++ +      L LN  + V+     +
Sbjct: 32  AFVVANHRTGEVISERNGNRVMPIASLTKLMTALVVLDA----NLRLNEMLTVTNADIDR 87

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              +   L   +  +  + +   +  S N  ++A      G ++ F   M+ KA+ +GM 
Sbjct: 88  IKGTGSRLAIGSRLSRAEMLHIALMSSENRAASALARHYPGGQRAFVEAMNAKARMLGMW 147

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIIT--NHN 228
           NT Y +++GL +   ++TA+D A        ++P   +Y +  +   R   R +   N N
Sbjct: 148 NTRYADSTGL-NPRNVSTAQDLAK-LAAAAASYPLIRQYSTDEQSYVRTNKRQLHYLNSN 205

Query: 229 KLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           +L+          KTGY R +G  +V   +   +P++ V++   T+ +R   A  + T  
Sbjct: 206 RLIREGQWEFTLSKTGYIREAGRCLVLGTKVNREPVIMVLLNAETTNDRVADAKRIKTWL 265

Query: 288 LE--KKTLKHQQT 298
               + TL   Q+
Sbjct: 266 ESSGRTTLAANQS 278


>gi|268608716|ref|ZP_06142443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus flavefaciens
           FD-1]
          Length = 482

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 98/251 (39%), Gaps = 31/251 (12%)

Query: 62  NKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS--KTAATQNPSKL 118
           +  ++  +   +E   PASLTK++T  +   Y     L  +T + V   +       S  
Sbjct: 111 DDGELLYYDNINEHIAPASLTKLLTASVALHY-----LSPDTVVTVGSEQNLVRSGSSLC 165

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFG------------EFISGSEKKFAILMSNKA 166
            ++          +  ++  S ND +                   + +   F  LM++ A
Sbjct: 166 LIRPGHKLKLYDLLTGMLMASGNDAAYTVAVTTARAVKPDTAMTDAQAVSYFTELMNSYA 225

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-----RN 221
             IGM+++ +    G  D +Q TT  D  +L      + P+        + +       N
Sbjct: 226 SSIGMRDSHFTTPEGWDDASQYTTVSDLLVLANHAF-SIPEIKTITGTYQKKVYFVSGEN 284

Query: 222 RIITNHNKLLNKMH-----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
              TN N LL+        +  GIKTG T ++G  ++ +        ++VV+G  T  +R
Sbjct: 285 ITWTNTNALLDPNSAYYCADAIGIKTGTTASAGNCLIAAFERNGKTYLSVVVGCGTGNDR 344

Query: 277 DQKALELITSF 287
            +  L++++ F
Sbjct: 345 YELTLKMLSQF 355


>gi|82750345|ref|YP_416086.1| penicillin binding protein 4 [Staphylococcus aureus RF122]
 gi|82655876|emb|CAI80280.1| penicillin binding protein 4 [Staphylococcus aureus RF122]
          Length = 431

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 107/263 (40%), Gaps = 24/263 (9%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  D    PAS+TK+MT+Y+  E +   +L L+  + ++            S
Sbjct: 57  QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T    +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT +
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176

Query: 177 KNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G                 +  +TTARD AIL + + K  P+   +           
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD- 277
                N  L      +   DG+KTG +  + +N   + +     I  V+MG    +  D 
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLDG 296

Query: 278 QKALELITSFLEKKTLKHQQTHR 300
           +K   ++ + L +++    +  +
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVK 319


>gi|74058494|gb|AAZ98837.1| VanYD [Enterococcus gallinarum]
          Length = 346

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 59/259 (22%), Positives = 104/259 (40%), Gaps = 32/259 (12%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++IVI+ + N+    K+  +   PAS  KM+T   + +Y        N ++ V     
Sbjct: 91  AANAIVINADTNETLYQKKSTDKIAPASTAKMITALTVLDYC-----SPNDEMRVGAEIE 145

Query: 112 TQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI------------SGSEKK 157
               + S+ +L +    T  Q ++AL+  S ND +                   + S   
Sbjct: 146 LMHDDSSRAWLMQGDTLTVRQLLVALMLPSGNDAAYTLAVNTGKKIAGDNGLSNAQSIDV 205

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS---- 213
           F   ++ KAK +G +N+ +    G     Q TTA D A++      + P   +  +    
Sbjct: 206 FMDKVNQKAKSLGAENSNFVVPDGYDADGQYTTAYDLAVIAKACLDD-PYISEIVASYSS 264

Query: 214 -IRKFRYRNRIITNHNKLLNKM-----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
             R    R     N N+LLN         + G+KTG +   G  IV++     +  +  V
Sbjct: 265 YERWPNGREVTYNNTNELLNPNSPYYRPEVIGLKTGTSSLGGACIVSAAVINGNTYICAV 324

Query: 268 MGMPTSQERDQKALELITS 286
           MG  T  +R Q  +++I +
Sbjct: 325 MGS-TENDRFQDGIDIIDA 342


>gi|158929991|gb|ABW82972.1| endopeptidase [uncultured bacterium pEAF66]
          Length = 368

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 95/232 (40%), Gaps = 13/232 (5%)

Query: 56  SIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++V+D N  ++   K  +     AS+TK+MT  ++ E  Q     +N  + V++      
Sbjct: 113 ALVLDQNSAEVLFEKNSKIALPIASITKLMTGLVVVEANQD----MNEILTVTEDDVDHE 168

Query: 115 P-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +   L+  +  +    +   +  S N  + A G    G    F   M+ KA+ +GM +
Sbjct: 169 KWTSSRLRVGSQLSRASLLHIALMSSENRAAAALGRNYPGGVAGFVEAMNAKARALGMYD 228

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIITNHNK 229
           T + ++SGL  KN I++A D A L        P   ++ +  K       R     N N 
Sbjct: 229 TRFVDSSGLSSKN-ISSAHDLAKLAAFAYHQ-PLLRQFSTDPKSVVAASGRTLNYHNTNY 286

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
           L+ +   +I   KTG+   +G  +V         ++ V +     Q R   A
Sbjct: 287 LVASPDWDIGLQKTGFINEAGRCLVMQAMISGRAVIMVFLDSKGKQSRTADA 338


>gi|313113074|ref|ZP_07798708.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624612|gb|EFQ07933.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 427

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 25/259 (9%)

Query: 50  AKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A    +  + + +  + +     D+ +Y ASLTK+MT  ++ E  +     LN ++ V  
Sbjct: 38  ASETEAVYLFNADTGKTILNQNADQQQYVASLTKLMTALLLLESGKD----LNGEVTV-P 92

Query: 109 TAATQ--------NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
           TA TQ        N + + L+          + A++  SAND ++     + GS   F  
Sbjct: 93  TALTQEFRDIQNANGTTMGLRIGETVRRIDLLNAMLIVSANDAASVIAYDVGGSVLDFVK 152

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFS----I 214
            M+ +A+++G   T +  A GL D   ++TA+D A +      N  F Q     S     
Sbjct: 153 QMNVRAQELGCTGTNFTCAHGLFDYGNVSTAQDLAKIAAACAANQTFAQVAGTASYVLPA 212

Query: 215 RKFRYRNRIITNHNKLLNKM-----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
              R     I++ N L+N         +  +K G+T  +G  IV            V++G
Sbjct: 213 TNLRKAEHTISSSNSLMNSESANYREYVRWVKGGFTTLAGRCIVAFAEKDGHTYGLVILG 272

Query: 270 MPTSQERDQKALELITSFL 288
             T      +  +L     
Sbjct: 273 CDTPDHLFAECDDLFDWAF 291


>gi|319744056|gb|EFV96433.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus agalactiae
           ATCC 13813]
          Length = 395

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 111/259 (42%), Gaps = 32/259 (12%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           KPK +SIVID NK  +      +  R PAS++KM TLY++FE L   K  LNT +  ++T
Sbjct: 45  KPK-ASIVID-NKGHILWEDNADLERDPASMSKMFTLYLLFEDLAKGKTSLNTTVTATET 102

Query: 110 AAT----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSN 164
                     S   +     +   + I      S+N  +      +S  +   F   ++ 
Sbjct: 103 DQAISKIYEISNNNIHAGVAYPIRELITMTAVPSSNVATIMIANHLSQNNPDAFIKRINE 162

Query: 165 KAKKIGMQNTIYKNASGL---------------HDKNQITTARDQAILGILLRKNFPQYY 209
            AKK+GM  T + N SG                ++   +TTARD +IL     K +P   
Sbjct: 163 TAKKLGMTKTHFYNPSGAVASAFNGLYSPKEYDNNATNVTTARDLSILTYHFLKKYPDIL 222

Query: 210 KYFSIRKF-----RYRNRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
            Y    +             T +N         +  +DG+KTG + ++ FN + + + ++
Sbjct: 223 NYTKYPEVKAMVGTPYEETFTTYNYSTPGAKFGLEGVDGLKTGSSPSAAFNALVTAKRQN 282

Query: 261 DPIVAVVMGMPTSQERDQK 279
             ++ VV+G+    ++D +
Sbjct: 283 TRLITVVLGVGDWSDQDGE 301


>gi|168070883|ref|XP_001786972.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660038|gb|EDQ48214.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 228

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 101/207 (48%), Gaps = 27/207 (13%)

Query: 28  IQLMGKILFLSIIMISMASELHAK----------PKYSSIVIDVNKNQMTGF-KQDEPRY 76
           +++ G  L ++++  +M                    S+I+++    ++      D P  
Sbjct: 19  VRITGLFLSVAVLATAMGGAATKADAAPAADLQLAAKSAILLEATTGKILYATNPDVPLP 78

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGI 132
           PAS++KMM+ Y++ E ++ KK+  + Q+PVS+ A       + S +YL     F+ ++  
Sbjct: 79  PASMSKMMSEYLVQEAVKQKKISWDEQVPVSEYAFYVAKISDASGVYLNAGESFSVKELY 138

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK------- 185
            A+   SAND +    E ++GSE  F  +M+ KAK++GM NT +  ++GL          
Sbjct: 139 KAMAVVSANDATVLLAEKVAGSEPNFVQMMNKKAKELGMTNTSFVTSTGLPANELGPYSV 198

Query: 186 -----NQITTARDQAILGILLRKNFPQ 207
                  + +ARD AIL   L ++FP+
Sbjct: 199 QTDQVENLMSARDSAILARALIRDFPE 225


>gi|22536331|ref|NP_687182.1| penicillin-binding protein 4 [Streptococcus agalactiae 2603V/R]
 gi|76787492|ref|YP_328877.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae A909]
 gi|77405132|ref|ZP_00782231.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae H36B]
 gi|22533155|gb|AAM99054.1|AE014198_2 penicillin-binding protein 4, putative [Streptococcus agalactiae
           2603V/R]
 gi|76562549|gb|ABA45133.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae A909]
 gi|77176275|gb|EAO79045.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae H36B]
          Length = 395

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 111/259 (42%), Gaps = 32/259 (12%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           KPK +SIVID NK  +      +  R PAS++KM TLY++FE L   K  LNT +  ++T
Sbjct: 45  KPK-ASIVID-NKGHILWEDNADLERDPASMSKMFTLYLLFEDLAKGKTSLNTTVTATET 102

Query: 110 AAT----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSN 164
                     S   +     +   + I      S+N  +      +S  +   F   ++ 
Sbjct: 103 DQAISKIYEISNNNIHAGVAYPIRELITMTAVPSSNVATIMIANHLSQNNPDAFIKRINE 162

Query: 165 KAKKIGMQNTIYKNASGL---------------HDKNQITTARDQAILGILLRKNFPQYY 209
            AKK+GM  T + N SG                ++   +TTARD +IL     K +P   
Sbjct: 163 TAKKLGMTKTHFYNPSGAVASAFNGLYSPKEYDNNATNVTTARDLSILTYHFLKKYPDIL 222

Query: 210 KYFSIRKF-----RYRNRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
            Y    +             T +N         +  +DG+KTG + ++ FN + + + ++
Sbjct: 223 NYTKYPEVKAMVGTPYEETFTTYNYSTPGAKFGLEGVDGLKTGSSPSAAFNALVTAKRQN 282

Query: 261 DPIVAVVMGMPTSQERDQK 279
             ++ VV+G+    ++D +
Sbjct: 283 TRLITVVLGVGDWSDQDGE 301


>gi|134094059|ref|YP_001099134.1| D-alanyl-D-alanine-endopeptidase [Herminiimonas arsenicoxydans]
          Length = 400

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 67/271 (24%), Positives = 116/271 (42%), Gaps = 16/271 (5%)

Query: 39  IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKK 97
           I  +SM  +  A     ++VID + +++   K        AS+TK+MT  ++ E  Q   
Sbjct: 134 IAGLSMTRDALALASSVALVIDQSTSEVLFEKNANVTLPIASITKLMTGLVVVEAQQD-- 191

Query: 98  LHLNTQIPVSKTAATQNP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
             +N  + V+     +   S   L+  +  +    +   +  S N  ++A G    G  +
Sbjct: 192 --MNEMLEVTAEDIDREKNSSSRLRVGSQLSRANMLHIALMSSENRAASALGRHYPGGLR 249

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F   M+ KAK +GM+ T Y +++GL   N + +ARD A L +    N P   +Y +  K
Sbjct: 250 AFVATMNAKAKSLGMRGTHYVDSTGLS-SNNVASARDLAKLVVEA-YNHPILRQYSTDSK 307

Query: 217 F--RYRNRIIT--NHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           +      R +   N N+L+       GI KTGY   +G  +V     K+ PIV + +   
Sbjct: 308 YVVEPGGRALQYANSNRLVTNPDWEIGIQKTGYISEAGRCLVMQTNIKERPIVMIFLDSK 367

Query: 272 TSQERDQKALELITSFLEKKTLKHQQTHRKD 302
               R   A  +       +T++ Q   R +
Sbjct: 368 GKFSRLGDAARIRKWL---ETMEPQNVARSN 395


>gi|19745419|ref|NP_606555.1| DD-carboxypeptidase [Streptococcus pyogenes MGAS8232]
 gi|19747530|gb|AAL97054.1| putative DD-carboxypeptidase [Streptococcus pyogenes MGAS8232]
          Length = 393

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 76/336 (22%), Positives = 141/336 (41%), Gaps = 49/336 (14%)

Query: 25  QRNIQLMGKILFLSIIMISMASEL------------HAKPKYSSIVIDVNKNQMTGFKQ- 71
           +R I  +   +  S++ +  A ++                  SSIV+D N + +      
Sbjct: 3   KRIILTIFTFICFSMMPLVHAEDVIDITRQAGYTVSEVNRPKSSIVVDANSSDILWQDNI 62

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYFT 127
           D PR PAS++KM TLYI+FE L   K+ ++T I  + T    A     S   +     + 
Sbjct: 63  DIPRDPASMSKMFTLYILFEELAKGKITMDTTITATPTDQAIANIYEISNNNIVAGVAYP 122

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLHDK- 185
               I      S+N  +     ++S ++   F   ++  AK++GM NT + NASG   + 
Sbjct: 123 IRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRINATAKQLGMTNTHFSNASGAAAQA 182

Query: 186 --------------NQITTARDQAILGILLRKNFPQYYKYF------SIRKFRYRNRIIT 225
                         + ITTARD + L     K +P+   +       ++    Y     T
Sbjct: 183 FQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPEIISFTNKSVVHTMVGTPYEEEFHT 242

Query: 226 NHNKLLN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            ++ L +    M  +DG+KTG + ++ FN + + +     ++ +VMG+    +++ +   
Sbjct: 243 YNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKRGKTRLITIVMGVGDWSDQNGEFYR 302

Query: 283 --LITSFLEK-----KTLKHQQTHRKDNLSSTSLKK 311
              + +  EK     KTL  +   + + L   + K+
Sbjct: 303 HPFVNALTEKGFKDSKTLSKKARQKLEKLVPQTKKE 338


>gi|306828007|ref|ZP_07461273.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pyogenes
           ATCC 10782]
 gi|304429788|gb|EFM32831.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pyogenes
           ATCC 10782]
          Length = 393

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 76/336 (22%), Positives = 141/336 (41%), Gaps = 49/336 (14%)

Query: 25  QRNIQLMGKILFLSIIMISMASEL------------HAKPKYSSIVIDVNKNQMTGFKQ- 71
           +R I  +   +  S++ +  A ++                  SSIV+D N + +      
Sbjct: 3   KRIILTIFTFICFSMMPLVHAEDVIDITRQAGYTVSEVNRPKSSIVVDANSSDILWQDNI 62

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYFT 127
           D PR PAS++KM TLYI+FE L   K+ ++T I  + T    A     S   +     + 
Sbjct: 63  DIPRDPASMSKMFTLYILFEELAKGKITMDTTITATPTDQAIANIYEISNNNIVAGVAYP 122

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLHDK- 185
               I      S+N  +     ++S ++   F   ++  AK++GM NT + NASG   + 
Sbjct: 123 IRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRINATAKQLGMTNTHFSNASGAAAQA 182

Query: 186 --------------NQITTARDQAILGILLRKNFPQYYKYF------SIRKFRYRNRIIT 225
                         + ITTARD + L     K +P+   +       ++    Y     T
Sbjct: 183 FQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPEIISFTNKSVVHTMVGTPYEEEFHT 242

Query: 226 NHNKLLN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            ++ L +    M  +DG+KTG + ++ FN + + +     ++ +VMG+    +++ +   
Sbjct: 243 YNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKRGKTRLITIVMGVGDWSDQNGEFYR 302

Query: 283 --LITSFLEK-----KTLKHQQTHRKDNLSSTSLKK 311
              + +  EK     KTL  +   + + L   + K+
Sbjct: 303 HPFVNALTEKGFKDSKTLSKKARQKLEKLVPQTKKE 338


>gi|94989756|ref|YP_597856.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS10270]
 gi|94543264|gb|ABF33312.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS10270]
          Length = 393

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 78/337 (23%), Positives = 144/337 (42%), Gaps = 51/337 (15%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHA-------------KPKYSSIVIDVNKNQMTGFKQ 71
           +R I  +   +  S++ +  A ++               +PK SSIV+D N + +     
Sbjct: 3   KRIILTIFTFICFSMMPLVHAEDVMDITRQAGYTVSEVNRPK-SSIVVDANSSDILWQDN 61

Query: 72  -DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYF 126
            D PR PAS++KM TLYI+FE L   K+ ++T I  + T    A     S   +     +
Sbjct: 62  IDIPRDPASMSKMFTLYILFEELAKGKITMDTTITATPTDQAIANIYEISNNNIVAGVAY 121

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLHDK 185
                I      S+N  +     ++S ++   F   ++  AK++GM NT + NASG   +
Sbjct: 122 PIRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRINATAKQLGMTNTHFSNASGAAAQ 181

Query: 186 ---------------NQITTARDQAILGILLRKNFPQYYKYF------SIRKFRYRNRII 224
                          + ITTARD + L     K +P+   +       ++    Y     
Sbjct: 182 AFQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPEIISFTNKSVVHTMVGTPYEEEFH 241

Query: 225 TNHNKLLN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           T ++ L +    M  +DG+KTG + ++ FN + + +     ++ +VMG+    +++ +  
Sbjct: 242 TYNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKRGKTRLITIVMGVGDWSDQNGEFY 301

Query: 282 E--LITSFLEK-----KTLKHQQTHRKDNLSSTSLKK 311
               + +  EK     KTL  +   + + L   + K+
Sbjct: 302 RHPFVNALTEKGFKDSKTLSKKARQKLEKLVPQTKKE 338


>gi|83644147|ref|YP_432582.1| D-alanyl-D-alanine carboxypeptidase [Hahella chejuensis KCTC 2396]
 gi|83632190|gb|ABC28157.1| D-alanyl-D-alanine carboxypeptidase [Hahella chejuensis KCTC 2396]
          Length = 313

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 107/268 (39%), Gaps = 31/268 (11%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYS------------SIVIDVNKNQMTGFKQDE 73
           +NI +   +LF S ++++ +     +   S            + V+DV        K  E
Sbjct: 2   KNILIALSLLFCSSVVLADSETTLPENLQSLDTANISLGSVNAKVVDVESGVTLFAKNPE 61

Query: 74  PRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTE 129
              P AS++K+MT  ++ +     +L L+  + +++          S++ +         
Sbjct: 62  TVAPIASISKLMTAMVVLDA----ELPLDEMLTITEEDIDTWKNTYSRMRI--GAVLPRS 115

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           + +L  +  S N  + A G    G    F   M++KA+ +GM+NT +   SGL  +N ++
Sbjct: 116 ELLLLALMSSENRAALALGRTYPGGMTAFVSAMNDKARALGMRNTRFVEPSGLSMEN-VS 174

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKF------RYRNRIITNHNKLLNK-MHNIDGIKT 242
           TA D   +     + +     Y +   +              N N L+ +    ++  KT
Sbjct: 175 TASDLVKMVSTASR-YKLIRDYTTTPSYMIKLGETENEMEFRNTNLLVRQGDWGVNLSKT 233

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           G+   +G  +V      + P+  V++  
Sbjct: 234 GFINEAGRCLVMLANVGERPVAMVLLDS 261


>gi|291548476|emb|CBL21584.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. SR1/5]
          Length = 415

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 111/255 (43%), Gaps = 23/255 (9%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           S+++++   + +   K  D    PA   K+MT  +  E  Q     L+ Q+ +++T  + 
Sbjct: 57  SAVIMEDISDTILYAKDMDTTLSPAGAVKIMTCLLALENSQ-----LDDQVTMTETGVSG 111

Query: 113 --QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                + +  +    FT EQ + AL+  SAND++    E I GS   F   M+++AK++G
Sbjct: 112 VTDGGAHISSQLGEVFTMEQCLYALMLASANDIALQVAEQIGGSVDAFVQKMNDRAKELG 171

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-------RNRI 223
             NT++ N +GL D NQ TTA D A++     +N   +        +           R 
Sbjct: 172 CTNTVFTNPTGLPDDNQHTTAHDLALIMQAAIRN-DSFRTISGATSYTIPATNVSGGTRN 230

Query: 224 ITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+   + +           G +   T  SG  +VT+ +     ++AVVM   T Q    
Sbjct: 231 LTSSFTMTDPASASYYEGCIGGRESTTTASGSVLVTAAQRNGTTLIAVVMNGATGQT-AT 289

Query: 279 KALELITSFLEKKTL 293
           +A+ L+        L
Sbjct: 290 EAISLLDYGFSNFQL 304


>gi|120597728|ref|YP_962302.1| D-alanyl-D-alanine endopeptidase [Shewanella sp. W3-18-1]
 gi|146294135|ref|YP_001184559.1| D-alanyl-D-alanine endopeptidase [Shewanella putrefaciens CN-32]
 gi|120557821|gb|ABM23748.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Shewanella sp. W3-18-1]
 gi|145565825|gb|ABP76760.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
           putrefaciens CN-32]
 gi|319427478|gb|ADV55552.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
           putrefaciens 200]
          Length = 322

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 100/245 (40%), Gaps = 17/245 (6%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSK 108
              S++V+D+  N++          P AS+TK+MT  +  +     KL ++ +  + +S 
Sbjct: 54  AANSALVVDLKTNEVLYSSNPNAVMPIASVTKLMTAMVTLDA----KLPMDQKLAVNISD 109

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
           T          ++  +  T ++ +L  +  S N  + +      G  K F   M+ KAK 
Sbjct: 110 T-KEMRGVYSRVRIGSEITRKEMLLLTLMSSENRAAASLAHHYPGGHKAFIKAMNAKAKA 168

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI--RKFRYRNRII-- 224
           +GM+NT Y   +GL  KN +++A D  +L     + +P   +  +   +   +       
Sbjct: 169 LGMKNTRYVEPTGLSHKN-VSSASDLIVLLKA-SEKYPMLGELSATEKKTVTFGKPKYSL 226

Query: 225 --TNHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
              N N+L+ K   NI   KTG+T  +G  +V         +  VV+           A 
Sbjct: 227 DFRNTNRLVYKDNWNIHLTKTGFTNAAGHCLVMRTEMAKRQVAFVVLDAYGKYTHLADAN 286

Query: 282 ELITS 286
            L   
Sbjct: 287 RLRNW 291


>gi|282915977|ref|ZP_06323742.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
           aureus D139]
 gi|282320273|gb|EFB50618.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
           aureus D139]
          Length = 431

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 101/263 (38%), Gaps = 29/263 (11%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  D    PAS+TK+MT+Y+  E +   +L L+  + ++            S
Sbjct: 57  QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T    +   ++ S+N  +      +S +   F  LM+NKAK IGM+NT +
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAMKVSKNTSNFVDLMNNKAKAIGMKNTHF 176

Query: 177 KNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G                 +  +TTARD AIL + + K  P+   +           
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------ 272
                N  L      +   DG+KTG +  + +N   + +     I  V+MG         
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296

Query: 273 SQERDQKALELITSFLEKKTLKH 295
            ++R+     L+    ++     
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVK 319


>gi|94993640|ref|YP_601738.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS10750]
 gi|94547148|gb|ABF37194.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS10750]
          Length = 393

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 78/337 (23%), Positives = 144/337 (42%), Gaps = 51/337 (15%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHA-------------KPKYSSIVIDVNKNQMTGFKQ 71
           +R I  +   +  S++ +  A ++               +PK SSIV+D N + +     
Sbjct: 3   KRIILTIFTFICFSMMPLVHADDVMDITRQAGYTVSEVNRPK-SSIVVDANSSDILWQDN 61

Query: 72  -DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYF 126
            D PR PAS++KM TLYI+FE L   K+ ++T I  + T    A     S   +     +
Sbjct: 62  IDIPRDPASMSKMFTLYILFEELAKGKITMDTTITATPTDQAIANIYEISNNNIVAGVAY 121

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLHDK 185
                I      S+N  +     ++S ++   F   ++  AK++GM NT + NASG   +
Sbjct: 122 PIRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRINATAKQLGMTNTHFSNASGAAAQ 181

Query: 186 ---------------NQITTARDQAILGILLRKNFPQYYKYF------SIRKFRYRNRII 224
                          + ITTARD + L     K +P+   +       ++    Y     
Sbjct: 182 AFQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPEIISFTNKSVVHTMVGTPYEEEFH 241

Query: 225 TNHNKLLN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           T ++ L +    M  +DG+KTG + ++ FN + + +     ++ +VMG+    +++ +  
Sbjct: 242 TYNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKRGKTRLITIVMGVGDWSDQNGEFY 301

Query: 282 E--LITSFLEK-----KTLKHQQTHRKDNLSSTSLKK 311
               + +  EK     KTL  +   + + L   + K+
Sbjct: 302 RHPFVNALTEKGFKDSKTLSKKARQKLEKLVPQTKKE 338


>gi|293375518|ref|ZP_06621795.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sanguinis
           PC909]
 gi|292645858|gb|EFF63891.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sanguinis
           PC909]
          Length = 324

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 108/248 (43%), Gaps = 17/248 (6%)

Query: 56  SIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +I++D+  N++   +  +   YPASLTKMMT+ +  E + +  + ++           + 
Sbjct: 80  AILVDLTANEIIYERNPDVITYPASLTKMMTVLVAIENMPNTPMVVDVDF---NKLYEEG 136

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            +          + +  +   +  S  D +     +++GSE+ F  LM+ KA+++GM +T
Sbjct: 137 AALAGFSNGQVVSGDDLLYGTMLPSGADAAQTLANYVAGSEEAFVELMNQKARELGMTST 196

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-RYRNRIITNHNKLLNK 233
            + N +GLHD N  +T RD A+L      N  ++ + +S + +      ++   +++ ++
Sbjct: 197 HFTNVTGLHDDNHYSTVRDMAVLVKAALYN-DKFREVYSAKSYVTSTTPMLVFTSRMFDR 255

Query: 234 MH-------NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALE 282
           +         + G KTGYT  +   + +           V         T Q     A+ 
Sbjct: 256 LSSPTFGRVEMLGGKTGYTHEAQLCLASYATDGKHEYALVTTHADGSAYTPQYHVLDAVY 315

Query: 283 LITSFLEK 290
           L   FL +
Sbjct: 316 LYNYFLNQ 323


>gi|326409095|gb|ADZ66160.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella
           melitensis M28]
 gi|326538799|gb|ADZ87014.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase
           fraction C) [Brucella melitensis M5-90]
          Length = 192

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 114/190 (60%), Gaps = 6/190 (3%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMM 84
           R  +    + F + ++ +      A    S +V D +  +M G         PASL KMM
Sbjct: 7   RISRFFASVAFGTAVLCASG----AMASTSWVVFDADSGRMLGQDDASAQHAPASLAKMM 62

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           TLY+ FE L++ +LH +  +P+SK AA++   KL+LK     +T   +  +I  SAND +
Sbjct: 63  TLYLTFEALKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAA 122

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-NQITTARDQAILGILLRK 203
           T  GE+++GSE  FA LM+ +A++IGM++TI+ N SGL    +Q+TTARD A+LG+ LR+
Sbjct: 123 TVMGEYLAGSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRR 182

Query: 204 NFPQYYKYFS 213
           +FP+ Y  FS
Sbjct: 183 DFPEEYALFS 192


>gi|50913624|ref|YP_059596.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS10394]
 gi|50902698|gb|AAT86413.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS10394]
          Length = 393

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 129/294 (43%), Gaps = 37/294 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT---- 109
           SSIV+D N + +      D PR PAS++KM TLYI+FE L   K+ ++T I  + T    
Sbjct: 45  SSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTITATPTDQAI 104

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK-KFAILMSNKAKK 168
           A     S   +     +     I      S+N  +     ++S ++   F   ++  AK+
Sbjct: 105 ANIYEISNNNIVAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRINATAKQ 164

Query: 169 IGMQNTIYKNASGLHDK---------------NQITTARDQAILGILLRKNFPQYYKYF- 212
           +GM NT + NASG   +               + ITTARD + L     K +P+   +  
Sbjct: 165 LGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPEIISFTN 224

Query: 213 -----SIRKFRYRNRIITNHNKLLN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
                ++    Y     T ++ L +    M  +DG+KTG + ++ FN + + +     ++
Sbjct: 225 KSVVHTMVGTPYEEEFHTYNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKRGKTRLI 284

Query: 265 AVVMGMPTSQERDQKALE--LITSFLEK-----KTLKHQQTHRKDNLSSTSLKK 311
            +VMG+    +++ +      + +  EK     KTL  +   + + L   + K+
Sbjct: 285 TIVMGVGDWSDQNGEFYRHPFVNALTEKGFKDSKTLSKKARQKLEKLVPQTKKE 338


>gi|71910061|ref|YP_281611.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS5005]
 gi|71852843|gb|AAZ50866.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS5005]
          Length = 393

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 78/337 (23%), Positives = 145/337 (43%), Gaps = 51/337 (15%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHA-------------KPKYSSIVIDVNKNQMTGFKQ 71
           +R I  +   +  S++ +  A ++               +PK SSIV+D N + +     
Sbjct: 3   KRIILTIFTFICFSVMPLVHAEDVMDITRQAGYTVSEVNRPK-SSIVVDANSSDILWQDN 61

Query: 72  -DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYF 126
            D PR PAS++KM TLYI+FE L   K+ ++T I  + T    A     S   +     +
Sbjct: 62  IDIPRDPASMSKMFTLYILFEELAKGKITMDTTITATPTDQAIANIYEISNNNIVAGVAY 121

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLHDK 185
                I      S+N  +     ++S ++   F   ++  AK++GM NT + NASG   +
Sbjct: 122 PIRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRVNATAKQLGMTNTHFSNASGAAAQ 181

Query: 186 ---------------NQITTARDQAILGILLRKNFPQYYKYF------SIRKFRYRNRII 224
                          + ITTARD + L     K +P+   +       ++    Y     
Sbjct: 182 AFQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPEIISFTNKSVVHTMVGTPYEEEFH 241

Query: 225 TNHNKLLN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK-- 279
           T ++ L +    M  +DG+KTG + ++ FN + + +     ++ +VMG+    +++ +  
Sbjct: 242 TYNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKRGKTRLITIVMGVGDWSDQNGEFY 301

Query: 280 ---ALELIT--SFLEKKTLKHQQTHRKDNLSSTSLKK 311
               +  +T   F + KTL  +   + + L   + K+
Sbjct: 302 IHPFVNALTEKGFKDSKTLSKKARQKLEKLVPQTKKE 338


>gi|4240003|dbj|BAA74787.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens]
          Length = 183

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 97/183 (53%), Gaps = 5/183 (2%)

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
           AA+   SK+  +     T  + +  L+ +S ND + A  E I GS + F+ILM++ A+ +
Sbjct: 1   AASIRGSKVGFRAGEKVTMRELLFGLMYKSGNDAAIAIAEHIGGSIENFSILMNDFARML 60

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF---RYR-NRIIT 225
           G++++ +++  GL  +   ++A D A+L     +  P + +    ++    +Y   R  +
Sbjct: 61  GLKDSNFQSPHGLDSQMHFSSAYDLAVLMSKAMEE-PFFREISGTKEVGAEKYNFTRSYS 119

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           N NK+L ++ N +G KTGYT  +G  +V+S+ +    I+ VV+  PT  E  ++  E + 
Sbjct: 120 NINKMLWRLPNANGGKTGYTGQAGKCLVSSVDHNGRNIIIVVLNCPTRWEATERVYEYVK 179

Query: 286 SFL 288
           +  
Sbjct: 180 ANY 182


>gi|326565231|gb|EGE15416.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis 12P80B1]
          Length = 386

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 116/261 (44%), Gaps = 23/261 (8%)

Query: 43  SMASELHAKP---KYSSIVI-DVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKK 97
           S  +  +A P   + +++++ D+   ++   K  D  R  AS++K+MT  +I +     +
Sbjct: 125 SYTNSFYALPISTRSAAVLVYDLQDGKLIYGKNADVQRSIASISKVMTAMVILDA----E 180

Query: 98  LHLNTQIP-VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           L +  +I  ++        +   LK     T  +  L ++ RS N  + A      G   
Sbjct: 181 LDMREEITLIASDLIGAKQASTRLKAGDRMTRSEFTLMMLMRSENPAAKALARTYPGGYD 240

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG--------ILLRKNFPQY 208
            F   M+ KA  +GM  T + ++SGL D + +++A D  I+             +NF   
Sbjct: 241 AFIAAMNQKAYDLGMYQTKFSDSSGL-DPHNMSSANDLLIMMKAVNSSPRYHSIRNFSTA 299

Query: 209 YKY-FSIRKFRYRNRII--TNHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIV 264
             Y F I  +   +RI    N N+L+ +     G+ KTGY R +G+++V      + P +
Sbjct: 300 PHYDFYIANYGSGDRIYKGNNTNRLVREGAYPIGVQKTGYIREAGYSVVMETNINNRPAI 359

Query: 265 AVVMGMPTSQERDQKALELIT 285
            V++G   S  R   A  ++T
Sbjct: 360 VVLLGASNSANRWSDAETILT 380


>gi|320140025|gb|EFW31886.1| beta-lactamase [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320141884|gb|EFW33712.1| beta-lactamase [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 414

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 102/263 (38%), Gaps = 29/263 (11%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  D    PAS+TK+MT+Y+  E +   +L L+  + ++            S
Sbjct: 40  QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 99

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T    +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT +
Sbjct: 100 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 159

Query: 177 KNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G                 +  +TTARD AIL + + K  P+   +           
Sbjct: 160 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 219

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------ 272
                N  L      +   DG+KTG +  + +N   + +     I  V+MG         
Sbjct: 220 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 279

Query: 273 SQERDQKALELITSFLEKKTLKH 295
            ++R+     L+    ++     
Sbjct: 280 EKQRNMMGNALMERSFDQYKYVK 302


>gi|77409047|ref|ZP_00785765.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae COH1]
 gi|77172341|gb|EAO75492.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae COH1]
          Length = 395

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 112/259 (43%), Gaps = 32/259 (12%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           KPK +SIVID NK  +      +  R PAS++KM TLY++FE L   K +LNT +  ++T
Sbjct: 45  KPK-ASIVID-NKGHILWEDNADLERDPASMSKMFTLYLLFEDLAKGKTNLNTTVTATET 102

Query: 110 AAT----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSN 164
                     S   +     +   + I      S+N  +      +S  +   F   ++ 
Sbjct: 103 DQAISKIYEISNNNIHAGVAYPIRELITMTAVPSSNVATIMIANHLSQNNPDAFIKRINE 162

Query: 165 KAKKIGMQNTIYKNASGL---------------HDKNQITTARDQAILGILLRKNFPQYY 209
            AKK+GM  T + N SG                ++   +TTARD +IL     K +P   
Sbjct: 163 TAKKLGMTKTHFYNPSGAVASAFNGLYSPKEYDNNATNVTTARDLSILTYHFLKKYPDIL 222

Query: 210 KYFSIRKF-----RYRNRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
            Y    +             T +N         +  +DG+KTG + ++ FN + + + ++
Sbjct: 223 NYTKYPEVKAMVGTPYEETFTTYNYSTPGAKFGLEGVDGLKTGSSPSAAFNALVTAKRQN 282

Query: 261 DPIVAVVMGMPTSQERDQK 279
             ++ VV+G+    ++D +
Sbjct: 283 TRLITVVLGVGDWSDQDGE 301


>gi|266618633|pdb|3HUM|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 From
           Staphylococcus Aureus Col In Complex With Cefotaxime
 gi|266618634|pdb|3HUM|B Chain B, Crystal Structure Of Penicillin Binding Protein 4 From
           Staphylococcus Aureus Col In Complex With Cefotaxime
 gi|266618635|pdb|3HUN|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 From
           Staphylococcus Aureus Col In Complex With Ampicillin
 gi|266618636|pdb|3HUN|B Chain B, Crystal Structure Of Penicillin Binding Protein 4 From
           Staphylococcus Aureus Col In Complex With Ampicillin
          Length = 453

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 102/263 (38%), Gaps = 29/263 (11%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  D    PAS+TK+MT+Y+  E +   +L L+  + ++            S
Sbjct: 79  QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 138

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T    +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT +
Sbjct: 139 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 198

Query: 177 KNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G                 +  +TTARD AIL + + K  P+   +           
Sbjct: 199 VNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 258

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------ 272
                N  L      +   DG+KTG +  + +N   + +     I  V+MG         
Sbjct: 259 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 318

Query: 273 SQERDQKALELITSFLEKKTLKH 295
            ++R+     L+    ++     
Sbjct: 319 EKQRNMMGNALMERSFDQYKYVK 341


>gi|269940219|emb|CBI48596.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           TW20]
          Length = 431

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 102/263 (38%), Gaps = 29/263 (11%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  D    PAS+TK+MT+Y+  E +   +L L+  + ++            S
Sbjct: 57  QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T    +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT +
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176

Query: 177 KNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G                 +  +TTARD AIL + + K  P+   +           
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------ 272
                N  L      +   DG+KTG +  + +N   + +     I  V+MG         
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296

Query: 273 SQERDQKALELITSFLEKKTLKH 295
            ++R+     L+    ++     
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVK 319


>gi|209558810|ref|YP_002285282.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes NZ131]
 gi|209540011|gb|ACI60587.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes NZ131]
          Length = 393

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 129/294 (43%), Gaps = 37/294 (12%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT---- 109
           SSIV+D N + +      D PR PAS++KM TLYI+FE L   K+ ++T I  + T    
Sbjct: 45  SSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTITATPTDQAI 104

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK-KFAILMSNKAKK 168
           A     S   +     +     I      S+N  +     ++S ++   F   ++  AK+
Sbjct: 105 ANIYEISNNNIVAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRINATAKQ 164

Query: 169 IGMQNTIYKNASGLHDK---------------NQITTARDQAILGILLRKNFPQYYKYF- 212
           +GM NT + NASG   +               + ITTARD + L     K +P+   +  
Sbjct: 165 LGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPEIISFTN 224

Query: 213 -----SIRKFRYRNRIITNHNKLLN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
                ++    Y     T ++ L +    M  +DG+KTG + ++ FN + + +     ++
Sbjct: 225 KSVVHTMVGTPYEEEFHTYNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKRGKTRLI 284

Query: 265 AVVMGMPTSQERDQKALE--LITSFLEK-----KTLKHQQTHRKDNLSSTSLKK 311
            +VMG+    +++ +      + +  EK     KTL  +   + + L   + K+
Sbjct: 285 TIVMGVGDWSDQNGEFYRHPFVNALTEKGFKDSKTLSKKARQKLEKLVPQTKKE 338


>gi|291544780|emb|CBL17889.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. 18P13]
          Length = 337

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 104/247 (42%), Gaps = 22/247 (8%)

Query: 56  SIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---- 110
           + V +V ++++   K   E  YPAS+TK+MTL +  E      + ++T     K      
Sbjct: 83  AYVWNVTEDRVLAEKNGQERMYPASMTKLMTLLLACESG----IAMDTPYVFDKDMLDPL 138

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             Q  S++  + +   T    +   I  S  D + A  E + G E  FA  M+ +A+ +G
Sbjct: 139 IAQGASRVGFEPEETVTFADLLYGSILSSGGDATAALAEVVDGDEASFAKHMNRRAQDLG 198

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNHNK 229
           M +T + NASGLHD    +TARD A+L     +N     +  S   +   RN +  N  +
Sbjct: 199 MFDTHFVNASGLHDDEHYSTARDIALLLEKTLEN-ATCREILSTSVYTTSRNSVHPNGME 257

Query: 230 L-----LNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +     L             G KTG+T  +G+ + +      D  + VV G        Q
Sbjct: 258 IRSVVELRMQDYQPEQVKFQGGKTGFTDQAGYCLASFAEQGSDTYIVVVAGGEEKNAPTQ 317

Query: 279 KALELIT 285
              +L  
Sbjct: 318 DTQKLYD 324


>gi|253732917|ref|ZP_04867082.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253729097|gb|EES97826.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 414

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 102/263 (38%), Gaps = 29/263 (11%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  D    PAS+TK+MT+Y+  E +   +L L+  + ++            S
Sbjct: 40  QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 99

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T    +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT +
Sbjct: 100 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 159

Query: 177 KNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G                 +  +TTARD AIL + + K  P+   +           
Sbjct: 160 VNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 219

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------ 272
                N  L      +   DG+KTG +  + +N   + +     I  V+MG         
Sbjct: 220 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 279

Query: 273 SQERDQKALELITSFLEKKTLKH 295
            ++R+     L+    ++     
Sbjct: 280 EKQRNMMGNALMERSFDQYKYVK 302


>gi|283769805|ref|ZP_06342697.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
           5/6) [Staphylococcus aureus subsp. aureus H19]
 gi|283459952|gb|EFC07042.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
           5/6) [Staphylococcus aureus subsp. aureus H19]
          Length = 431

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 101/263 (38%), Gaps = 29/263 (11%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  D    PAS+TK+MT+Y+  E +   +L L+  + ++            S
Sbjct: 57  QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T    +   ++ S+N  +      +S +   F  LM+NKAK IGM+NT +
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAMKVSKNTSDFVDLMNNKAKAIGMKNTHF 176

Query: 177 KNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G                 +  +TTARD AIL + + K  P+   +           
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------ 272
                N  L      +   DG+KTG +  + +N   + +     I  V+MG         
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296

Query: 273 SQERDQKALELITSFLEKKTLKH 295
            ++R+     L+    ++     
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVK 319


>gi|218133984|ref|ZP_03462788.1| hypothetical protein BACPEC_01874 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991359|gb|EEC57365.1| hypothetical protein BACPEC_01874 [Bacteroides pectinophilus ATCC
           43243]
          Length = 401

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 66/257 (25%), Positives = 117/257 (45%), Gaps = 25/257 (9%)

Query: 51  KPKYSSI-VIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS- 107
           K K + I ++D++ +++   +Q D   YPAS+TK+MTL I  E ++     +N    ++ 
Sbjct: 150 KVKSAYISLVDIDSHEIIAGRQYDAKIYPASMTKVMTLIIAVENIRD----MNDTFTMTT 205

Query: 108 ---KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
                   +N S+         T    +  LI  S  D + A    I+GSE+++A LM+ 
Sbjct: 206 ELIDPLVRENASRAGFDPGEKVTANDLLYGLILPSGADAAQALARMIAGSEEEYAGLMNA 265

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN-----FPQYYKYFSIRKFRY 219
           K  +IG++NT + N SGL+D +Q TT  +  ++     +N         Y+Y +    ++
Sbjct: 266 KCAEIGLKNTHFANTSGLYDADQYTTPVEMGMIMEYAMQNELCAKVLSTYQYTTAPSPQH 325

Query: 220 -RNRIITNHNKLLNKMHN-------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
                +T+   + ++M+        I   KTGY   SG  +V+     D   V V  G  
Sbjct: 326 PGGIALTST--MFSRMYGTEAEGVTITAGKTGYITESGNCLVSYAVKGDKHYVCVTSGGT 383

Query: 272 TSQERDQKALELITSFL 288
              +     +EL  ++L
Sbjct: 384 NKWDSIFDDIELYGNYL 400


>gi|167745617|ref|ZP_02417744.1| hypothetical protein ANACAC_00309 [Anaerostipes caccae DSM 14662]
 gi|167654929|gb|EDR99058.1| hypothetical protein ANACAC_00309 [Anaerostipes caccae DSM 14662]
          Length = 316

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 116/248 (46%), Gaps = 25/248 (10%)

Query: 56  SIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +++++   NQ+   ++  +  YPAS+TK+MT  ++ E  +     L+  + + K     +
Sbjct: 71  ALLVNNTTNQVVAAQKVFDKAYPASITKIMTALLVLENCR-----LDDVVTIDKDITFDD 125

Query: 115 PS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           P+   L+LK+    T E  +  LI  SAND + A G  ++GS+KKF  +M+ +A+++G  
Sbjct: 126 PAAVSLHLKKGDKITVEALLNGLIVMSANDTAIALGRKVAGSDKKFVAMMNKRARELGAT 185

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN------ 226
           NT ++N +GLH KN  TTA D  ++   L K   ++                 N      
Sbjct: 186 NTNFENPNGLHLKNHYTTAYDLYLIFQELVK-HNEFLSIAGKASSYIEYTNQKNKLQAFD 244

Query: 227 ---HN-KLLNKMH-----NIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVMGMPTSQER 276
               N  LL   +      + G KTG T  +G  ++   +  + +  ++V++   + Q  
Sbjct: 245 MAATNQYLLGNYNLPHKVFMLGGKTGTTTEAGSCLIILTKNEEGEEFISVILKASSKQTL 304

Query: 277 DQKALELI 284
                E++
Sbjct: 305 YHTMTEVL 312


>gi|49482870|ref|YP_040094.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295427185|ref|ZP_06819821.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|49240999|emb|CAG39669.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295128973|gb|EFG58603.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
           aureus EMRSA16]
          Length = 431

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 102/263 (38%), Gaps = 29/263 (11%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  D    PAS+TK+MT+Y+  E +   +L L+  + ++            S
Sbjct: 57  QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T    +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT +
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176

Query: 177 KNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G                 +  +TTARD AIL + + K  P+   +           
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------ 272
                N  L      +   DG+KTG +  + +N   + +     I  V+MG         
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296

Query: 273 SQERDQKALELITSFLEKKTLKH 295
            ++R+     L+    ++     
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVK 319


>gi|326563690|gb|EGE13942.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis 103P14B1]
 gi|326566458|gb|EGE16608.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis BC1]
 gi|326573300|gb|EGE23268.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis 101P30B1]
 gi|326575803|gb|EGE25726.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis CO72]
          Length = 386

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 115/261 (44%), Gaps = 23/261 (8%)

Query: 43  SMASELHAKP---KYSSIVI-DVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKK 97
           S  +  +A P   + +++++ D+   ++   K  D  R  AS++K+MT  +I +     +
Sbjct: 125 SYTNSFYALPISTRSAAVLVYDLQDGKLIYGKNADVQRSIASISKVMTAMVILDA----E 180

Query: 98  LHLNTQIP-VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           L +  +I  ++        +   LK     T  +  L ++ RS N  + A      G   
Sbjct: 181 LDMREEITLIASDLIGAKQASTRLKAGDRMTRSEFTLMMLMRSENPAAKALARTYPGGYD 240

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG--------ILLRKNFPQY 208
            F   M+ KA  +GM  T + ++SGL D   +++A D  I+             +NF   
Sbjct: 241 AFIAAMNQKAYDLGMYQTKFSDSSGL-DPRNMSSANDLLIMMKAVNSSPRYHSIRNFSTA 299

Query: 209 YKY-FSIRKFRYRNRII--TNHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIV 264
             Y F I  +   +RI    N N+L+ +     G+ KTGY R +G+++V      + P +
Sbjct: 300 PHYDFYIANYGSGDRIYKGNNTNRLVREGAYPIGVQKTGYIREAGYSVVMETNINNRPAI 359

Query: 265 AVVMGMPTSQERDQKALELIT 285
            V++G   S  R   A  ++T
Sbjct: 360 VVLLGASNSANRWSDAETILT 380


>gi|50513810|pdb|1TVF|A Chain A, Crystal Structure Of Penicillin-Binding Protein 4 (Pbp4)
           From Staphylococcus Aureus
 gi|50513811|pdb|1TVF|B Chain B, Crystal Structure Of Penicillin-Binding Protein 4 (Pbp4)
           From Staphylococcus Aureus
          Length = 369

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 102/263 (38%), Gaps = 29/263 (11%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  D    PAS+TK+MT+Y+  E +   +L L+  + ++            S
Sbjct: 43  QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 102

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T    +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT +
Sbjct: 103 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 162

Query: 177 KNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G                 +  +TTARD AIL + + K  P+   +           
Sbjct: 163 VNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 222

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------ 272
                N  L      +   DG+KTG +  + +N   + +     I  V+MG         
Sbjct: 223 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 282

Query: 273 SQERDQKALELITSFLEKKTLKH 295
            ++R+     L+    ++     
Sbjct: 283 EKQRNMMGNALMERSFDQYKYVK 305


>gi|225027655|ref|ZP_03716847.1| hypothetical protein EUBHAL_01914 [Eubacterium hallii DSM 3353]
 gi|224954969|gb|EEG36178.1| hypothetical protein EUBHAL_01914 [Eubacterium hallii DSM 3353]
          Length = 321

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 64/268 (23%), Positives = 122/268 (45%), Gaps = 24/268 (8%)

Query: 37  LSIIMISMASELHAKP-KYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQ 94
           L+++  S A++ + +   Y+ ++I+ + N++   +   +  YPAS+TK+MT  +  E+  
Sbjct: 55  LAVLSDSEATDPNYQSNDYADLLINDSTNEVLESYHCFDRLYPASITKVMTALLTLEHG- 113

Query: 95  SKKLHLNTQIPV--SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
               +++ +I +               L +    T  Q    ++ +SAND +    E+++
Sbjct: 114 ----NMDDEITLKHDINLTENGAVISTLTKGDTVTVGQVFHTMLIKSANDCAVILAEYVA 169

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK--------N 204
           GSE KF  +M+ KAK++G  +T + N +GLHD N  TTA D  ++     K        +
Sbjct: 170 GSESKFIDMMNAKAKELGATHTHFVNPNGLHDNNHYTTAYDLYLIFKEAVKYDTFVDTVS 229

Query: 205 FPQYYKYFSIRKFRYRNRIITNHN-KLLNKMH-----NIDGIKTGYTRNSGFNIV-TSLR 257
              Y   ++  K    N  + + N  LLN+        + G KTG T  +   ++  +  
Sbjct: 230 SKDYTMTYTTPKKTQINEYMQSTNYYLLNEFPVPEGVVMYGGKTGTTSMAKSCLILMTKN 289

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELIT 285
            K +   +VV+G  T         +L+ 
Sbjct: 290 KKGERFFSVVLGAETKDMLYSSMSQLLE 317


>gi|139473104|ref|YP_001127819.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes str.
           Manfredo]
 gi|134271350|emb|CAM29568.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
           pyogenes str. Manfredo]
          Length = 393

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/336 (22%), Positives = 141/336 (41%), Gaps = 49/336 (14%)

Query: 25  QRNIQLMGKILFLSIIMISMASEL------------HAKPKYSSIVIDVNKNQMTGFKQ- 71
           +R I  +   +  S++ +  A ++                  SSIV+D N + +      
Sbjct: 3   KRIILTIFTFICFSMMPLVHAEDVIDITRQAGYTVSEVNRPKSSIVVDANSSDILWQDNI 62

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYFT 127
           D PR PAS++KM TLYI+FE L   K+ ++T I  + T    A     S   +     + 
Sbjct: 63  DIPRDPASMSKMFTLYILFEELAKGKITMDTTITATPTDQAIANIYEISNNNIIAGVAYP 122

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLHDK- 185
               I      S+N  +     ++S ++   F   ++  AK++GM NT + NASG   + 
Sbjct: 123 IRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRINATAKQLGMTNTHFSNASGAAAQA 182

Query: 186 --------------NQITTARDQAILGILLRKNFPQYYKYF------SIRKFRYRNRIIT 225
                         + ITTARD + L     K +P+   +       ++    Y     T
Sbjct: 183 FQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPEIISFTNKSVVHTMVGTPYEEEFHT 242

Query: 226 NHNKLLN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            ++ L +    M  +DG+KTG + ++ FN + + +     ++ +VMG+    +++ +   
Sbjct: 243 YNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKRGKTRLITIVMGVGDWSDQNGEFYR 302

Query: 283 --LITSFLEK-----KTLKHQQTHRKDNLSSTSLKK 311
              + +  EK     KTL  +   + + L   + K+
Sbjct: 303 HPFVNALTEKGFKDSKTLSKKARQKLEKLVPQTKKE 338


>gi|160892647|ref|ZP_02073437.1| hypothetical protein CLOL250_00177 [Clostridium sp. L2-50]
 gi|156865688|gb|EDO59119.1| hypothetical protein CLOL250_00177 [Clostridium sp. L2-50]
          Length = 323

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 108/265 (40%), Gaps = 22/265 (8%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           ++A E ++  K S+++I+ +  + +      +  YPAS+TK+MT  ++ E ++   L L+
Sbjct: 60  ALADENYSAVK-SAVLINDSTKEALVVHNAHDRIYPASMTKLMTGLLVMESIEDGTLSLD 118

Query: 102 TQIPVSKTAATQNPSKLY---LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
             I +S T   Q    +    L +    T +  +  L+ RS ND      E I+GSE  F
Sbjct: 119 DTITLSHTVTFQE-DNVGVSDLTKGCSVTVKNLLYGLLIRSYNDCGVLLAEKIAGSEDAF 177

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL--------GILLRKNFPQYYK 210
              M+ KA ++G  NT + N  GLH  +  TTA D  ++           L  +   Y  
Sbjct: 178 VEKMNEKAFELGATNTHFVNCHGLHSDDHYTTAYDLYLIFSEFIKHDMAYLIDSLDSYDF 237

Query: 211 YFSIRKFRYRNRIITNHNKLLNK----MHNIDGI--KTGYTRNSGFNIVTSLRYK--DDP 262
            ++      ++  +   N  ++              K+G T  +G  ++         D 
Sbjct: 238 TYTDETGAEKSVTLQATNGYISGEFKFPEGYSLGSWKSGTTTAAGNCLILEFVKDDTGDK 297

Query: 263 IVAVVMGMPTSQERDQKALELITSF 287
            VAV+ G             LI + 
Sbjct: 298 YVAVIAGAEDRDTLYNDMTMLINTA 322


>gi|21282333|ref|NP_645421.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485514|ref|YP_042735.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297208633|ref|ZP_06925062.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300912725|ref|ZP_07130168.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|21203770|dbj|BAB94469.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49243957|emb|CAG42383.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296886888|gb|EFH25792.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300886971|gb|EFK82173.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           TCH70]
          Length = 431

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 102/263 (38%), Gaps = 29/263 (11%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  D    PAS+TK+MT+Y+  E +   +L L+  + ++            S
Sbjct: 57  QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T    +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT +
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176

Query: 177 KNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G                 +  +TTARD AIL + + K  P+   +           
Sbjct: 177 VNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------ 272
                N  L      +   DG+KTG +  + +N   + +     I  V+MG         
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296

Query: 273 SQERDQKALELITSFLEKKTLKH 295
            ++R+     L+    ++     
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVK 319


>gi|258423292|ref|ZP_05686183.1| penicillin-binding protein 4 [Staphylococcus aureus A9635]
 gi|257846353|gb|EEV70376.1| penicillin-binding protein 4 [Staphylococcus aureus A9635]
          Length = 431

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 102/263 (38%), Gaps = 29/263 (11%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  D    PAS+TK+MT+Y+  E +   +L L+  + ++            S
Sbjct: 57  QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T    +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT +
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176

Query: 177 KNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G                 +  +TTARD AIL + + K  P+   +           
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDFAILDLHVIKETPKILDFTKQLAPTTHAV 236

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------ 272
                N  L      +   DG+KTG +  + +N   + +     I  V+MG         
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296

Query: 273 SQERDQKALELITSFLEKKTLKH 295
            ++R+     L+    ++     
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVK 319


>gi|15923632|ref|NP_371166.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926319|ref|NP_373852.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148267101|ref|YP_001246044.1| Serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150393149|ref|YP_001315824.1| Serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156978970|ref|YP_001441229.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315285|ref|ZP_04838498.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|255005435|ref|ZP_05144036.2| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795094|ref|ZP_05644073.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           A9781]
 gi|258418353|ref|ZP_05682618.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           A9763]
 gi|258419969|ref|ZP_05682927.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           A9719]
 gi|258430843|ref|ZP_05688555.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           A9299]
 gi|258441664|ref|ZP_05690936.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           A8115]
 gi|258445900|ref|ZP_05694077.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           A6300]
 gi|258449705|ref|ZP_05697807.1| penicillin binding protein 4 [Staphylococcus aureus A6224]
 gi|258454106|ref|ZP_05702078.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           A5937]
 gi|269202263|ref|YP_003281532.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282894406|ref|ZP_06302635.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
           5/6) [Staphylococcus aureus A8117]
 gi|282926504|ref|ZP_06334134.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
           5/6) [Staphylococcus aureus A10102]
 gi|295407421|ref|ZP_06817217.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus A8819]
 gi|296274707|ref|ZP_06857214.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297246543|ref|ZP_06930379.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus A8796]
 gi|13700533|dbj|BAB41830.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
           N315]
 gi|14246411|dbj|BAB56804.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|147740170|gb|ABQ48468.1| Serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149945601|gb|ABR51537.1| Serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156721105|dbj|BAF77522.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257789066|gb|EEV27406.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           A9781]
 gi|257839146|gb|EEV63625.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           A9763]
 gi|257844052|gb|EEV68443.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           A9719]
 gi|257849515|gb|EEV73485.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           A9299]
 gi|257852133|gb|EEV76060.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           A8115]
 gi|257855476|gb|EEV78414.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           A6300]
 gi|257857213|gb|EEV80112.1| penicillin binding protein 4 [Staphylococcus aureus A6224]
 gi|257863971|gb|EEV86727.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           A5937]
 gi|262074553|gb|ACY10526.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282591397|gb|EFB96469.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
           5/6) [Staphylococcus aureus A10102]
 gi|282763119|gb|EFC03250.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
           5/6) [Staphylococcus aureus A8117]
 gi|285816342|gb|ADC36829.1| D-alanyl-D-alanine carboxypeptidase / Penicillin binding protein
           PBP4 [Staphylococcus aureus 04-02981]
 gi|294967702|gb|EFG43735.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus A8819]
 gi|297176574|gb|EFH35838.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus A8796]
 gi|312829136|emb|CBX33978.1| D-alanyl-D-alanine carboxypeptidase family protein [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315128480|gb|EFT84487.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329724987|gb|EGG61485.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 431

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 102/263 (38%), Gaps = 29/263 (11%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  D    PAS+TK+MT+Y+  E +   +L L+  + ++            S
Sbjct: 57  QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T    +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT +
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176

Query: 177 KNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G                 +  +TTARD AIL + + K  P+   +           
Sbjct: 177 VNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------ 272
                N  L      +   DG+KTG +  + +N   + +     I  V+MG         
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296

Query: 273 SQERDQKALELITSFLEKKTLKH 295
            ++R+     L+    ++     
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVK 319


>gi|326560224|gb|EGE10612.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis 7169]
 gi|326562868|gb|EGE13155.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis 46P47B1]
 gi|326570266|gb|EGE20311.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis BC8]
 gi|326571002|gb|EGE21026.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis BC7]
 gi|326576883|gb|EGE26789.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis O35E]
          Length = 386

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 115/261 (44%), Gaps = 23/261 (8%)

Query: 43  SMASELHAKP---KYSSIVI-DVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKK 97
           S  +  +A P   + +++++ D+   ++   K  D  R  AS++K+MT  +I +     +
Sbjct: 125 SYTNSFYALPISTRSAAVLVYDLQDGKLIYGKNADVQRSIASISKVMTAMVILDA----E 180

Query: 98  LHLNTQIP-VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           L +  +I  ++        +   LK     T  +  L ++ RS N  + A      G   
Sbjct: 181 LDMREEITLIASDLIGAKQASTRLKAGDRMTRSEFTLMMLMRSENPAAKALARTYPGGYD 240

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG--------ILLRKNFPQY 208
            F   M+ KA  +GM  T + ++SGL D   +++A D  I+             +NF   
Sbjct: 241 AFIAAMNQKAYDLGMYQTKFSDSSGL-DPRNMSSANDLLIMMKAVNSSPRYHSIRNFSTA 299

Query: 209 YKY-FSIRKFRYRNRII--TNHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIV 264
             Y F I  +   +RI    N N+L+ +     G+ KTGY R +G+++V      + P +
Sbjct: 300 PHYDFYIANYGSGDRIYKGNNTNRLVREGAYPIGVQKTGYIREAGYSVVMETNINNRPAI 359

Query: 265 AVVMGMPTSQERDQKALELIT 285
            V++G   S  R   A  ++T
Sbjct: 360 VVLLGASNSANRWSDAETILT 380


>gi|257424761|ref|ZP_05601188.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257272331|gb|EEV04454.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           55/2053]
          Length = 455

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 102/263 (38%), Gaps = 29/263 (11%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  D    PAS+TK+MT+Y+  E +   +L L+  + ++            S
Sbjct: 57  QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T    +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT +
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176

Query: 177 KNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G                 +  +TTARD AIL + + K  P+   +           
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------ 272
                N  L      +   DG+KTG +  + +N   + +     I  V+MG         
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296

Query: 273 SQERDQKALELITSFLEKKTLKH 295
            ++R+     L+    ++     
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVK 319


>gi|256556949|gb|ACU83571.1| D-alanyl-D-alanine carboxypeptidase [uncultured bacterium
           HF130_AEPn_2]
          Length = 307

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 62/279 (22%), Positives = 120/279 (43%), Gaps = 25/279 (8%)

Query: 27  NIQLMGKILFLSII-MISMASELHAKPK---------YSSIVIDVNKNQMTGFKQDEPRY 76
           NI+L    LF +    ++ ASE    P+          S++++D+  N++      +   
Sbjct: 2   NIRLSLVSLFFAFAGTVANASETTLAPRDTSQLHIASGSAMLVDLQTNKVIYASNPDVVV 61

Query: 77  P-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQNPSKLYLKEKTYFTTEQGILA 134
           P AS+TK+MT  ++ +     K +++  I ++ +           +K  +    ++ +L 
Sbjct: 62  PIASVTKLMTGMVVLDA----KQNMDEYISINISDTPEMKGVFSRVKLNSEMPRKEMLLI 117

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + +      G    F   M+ KAK +GM +T Y   +GL   N ++TARD 
Sbjct: 118 TLMSSENRAAASLAHHYPGGYAAFIAAMNAKAKALGMNSTRYVEPTGLSIHN-VSTARDL 176

Query: 195 AILGILLRKNFPQYYKYFSIRK----FRYRNRII--TNHNKLLNK-MHNIDGIKTGYTRN 247
           + L    RK +P   +  + ++    FR  N  +  +N + L+N+   +I   KTG+T  
Sbjct: 177 SKLVQAARK-YPMLTQLSTTKEKTVSFRKPNYTLGFSNTDHLVNRANWDIKLTKTGFTNQ 235

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           +G  +V      + P+  V++           A  +   
Sbjct: 236 AGHCLVLVTSMGNRPVSLVILDAFGKFTHFADASRIRKW 274


>gi|257427430|ref|ZP_05603829.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430061|ref|ZP_05606445.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432763|ref|ZP_05609123.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435667|ref|ZP_05611715.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           M876]
 gi|282903234|ref|ZP_06311125.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905021|ref|ZP_06312879.1| D-alanyl-D-alanine carboxypeptidase penicillin binding protein 5/6
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282907979|ref|ZP_06315813.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910286|ref|ZP_06318090.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282913479|ref|ZP_06321268.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           M899]
 gi|282918432|ref|ZP_06326169.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
           aureus C427]
 gi|282923397|ref|ZP_06331077.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
           5/6) [Staphylococcus aureus subsp. aureus C101]
 gi|283957442|ref|ZP_06374895.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293500526|ref|ZP_06666377.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293509471|ref|ZP_06668182.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
           aureus M809]
 gi|293524058|ref|ZP_06670745.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           M1015]
 gi|297590466|ref|ZP_06949105.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           MN8]
 gi|257275623|gb|EEV07096.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257279258|gb|EEV09859.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257282178|gb|EEV12313.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284858|gb|EEV14977.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           M876]
 gi|282314265|gb|EFB44655.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
           5/6) [Staphylococcus aureus subsp. aureus C101]
 gi|282317566|gb|EFB47938.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
           aureus C427]
 gi|282322511|gb|EFB52833.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           M899]
 gi|282325678|gb|EFB55986.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282328224|gb|EFB58503.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331846|gb|EFB61357.1| D-alanyl-D-alanine carboxypeptidase penicillin binding protein 5/6
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282596189|gb|EFC01150.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           C160]
 gi|283790893|gb|EFC29708.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290921021|gb|EFD98082.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291095531|gb|EFE25792.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467568|gb|EFF10083.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
           aureus M809]
 gi|297576765|gb|EFH95480.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           MN8]
 gi|312438936|gb|ADQ78007.1| D-alanyl-D-alanine
           carboxypeptidase\/D-alanyl-D-alanine-endopeptidase
           [Staphylococcus aureus subsp. aureus TCH60]
 gi|315194012|gb|EFU24406.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 431

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 102/263 (38%), Gaps = 29/263 (11%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  D    PAS+TK+MT+Y+  E +   +L L+  + ++            S
Sbjct: 57  QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T    +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT +
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176

Query: 177 KNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G                 +  +TTARD AIL + + K  P+   +           
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------ 272
                N  L      +   DG+KTG +  + +N   + +     I  V+MG         
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296

Query: 273 SQERDQKALELITSFLEKKTLKH 295
            ++R+     L+    ++     
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVK 319


>gi|291613451|ref|YP_003523608.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sideroxydans
           lithotrophicus ES-1]
 gi|291583563|gb|ADE11221.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sideroxydans
           lithotrophicus ES-1]
          Length = 299

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 105/250 (42%), Gaps = 15/250 (6%)

Query: 43  SMASELHAKPK-YSSIVI--DVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKL 98
           S+A      P+  S+I +  D    +    K        AS+TK+MT  +I +     KL
Sbjct: 36  SVAFSHMPPPRLQSAIAMIYDEQDQRPIYSKNSHNVVPIASITKLMTAMVILDA----KL 91

Query: 99  HLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
            ++  I +S         S+  ++     T  + I   +  S N  + A      G    
Sbjct: 92  PMDEPISISPEDRDHLKGSRSRMRNGMTLTRAELIQLALMSSENRAAAALARTYPGGTPV 151

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR-KNFPQYYKYFSIRK 216
              +M+ KA+++GM +T + + +GL+  N ++TA+D   + +  +   + Q+      R 
Sbjct: 152 MLAMMNAKARELGMNSTHFLDPTGLNSAN-VSTAQDLVKMVMAAQGYEYIQHCTTSHSRI 210

Query: 217 FRYRNR---IITNHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            +  +R     +N N L+       G+ KTGY   +G  +V   R  D P++ V++    
Sbjct: 211 VQVDSRRTLRFSNTNPLVRNSQWDIGLSKTGYISEAGRCLVMQARITDRPVIIVLLDSWG 270

Query: 273 SQERDQKALE 282
            + R   A+ 
Sbjct: 271 KRTRVGDAVR 280


>gi|57651483|ref|YP_185581.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           COL]
 gi|87161157|ref|YP_493332.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194413|ref|YP_499206.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|151220824|ref|YP_001331646.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161508904|ref|YP_001574563.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140859|ref|ZP_03565352.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|262048386|ref|ZP_06021271.1| penicillin binding protein 4 [Staphylococcus aureus D30]
 gi|262051768|ref|ZP_06023986.1| penicillin binding protein 4 [Staphylococcus aureus 930918-3]
 gi|282921932|ref|ZP_06329630.1| D-alanyl-D-alanine carboxypeptidase/Penicillin binding protein PBP4
           [Staphylococcus aureus A9765]
 gi|284023665|ref|ZP_06378063.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           132]
 gi|294849312|ref|ZP_06790055.1| D-alanyl-D-alanine carboxypeptidase/Penicillin binding protein PBP4
           [Staphylococcus aureus A9754]
 gi|304381746|ref|ZP_07364394.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|57285669|gb|AAW37763.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           COL]
 gi|87127131|gb|ABD21645.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87201971|gb|ABD29781.1| penicillin-binding protein 4, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|150373624|dbj|BAF66884.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160367713|gb|ABX28684.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|259160379|gb|EEW45405.1| penicillin binding protein 4 [Staphylococcus aureus 930918-3]
 gi|259163474|gb|EEW48031.1| penicillin binding protein 4 [Staphylococcus aureus D30]
 gi|282593785|gb|EFB98776.1| D-alanyl-D-alanine carboxypeptidase/Penicillin binding protein PBP4
           [Staphylococcus aureus A9765]
 gi|294823844|gb|EFG40270.1| D-alanyl-D-alanine carboxypeptidase/Penicillin binding protein PBP4
           [Staphylococcus aureus A9754]
 gi|302750541|gb|ADL64718.1| Serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304339697|gb|EFM05643.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|315197613|gb|EFU27948.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|329313365|gb|AEB87778.1| Penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329729882|gb|EGG66274.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 431

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 102/263 (38%), Gaps = 29/263 (11%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  D    PAS+TK+MT+Y+  E +   +L L+  + ++            S
Sbjct: 57  QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T    +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT +
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176

Query: 177 KNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G                 +  +TTARD AIL + + K  P+   +           
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------ 272
                N  L      +   DG+KTG +  + +N   + +     I  V+MG         
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296

Query: 273 SQERDQKALELITSFLEKKTLKH 295
            ++R+     L+    ++     
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVK 319


>gi|328880472|emb|CCA53711.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces venezuelae ATCC
           10712]
          Length = 421

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 98/261 (37%), Gaps = 19/261 (7%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +  A  +      S +V D +  ++   +       PAS  K          L  ++   
Sbjct: 69  LPGAPGVPEVSALSWVVADASSGEVLAARNAHRKLPPASTLK---ALFALTALPYQEPSA 125

Query: 101 NTQIPVSKTAATQNPSK-LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
              +  S+     + S  + +KE   +        +   S ND        ++G  +  +
Sbjct: 126 QHTVADSELTGIGDGSSLVGVKEGYTYKVSDLWNGVFLSSGNDAVHVLA-AMNGGWESMS 184

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             M  KA+ +G  +T   +  G     Q+++A D A+ G    ++ P + KY S     +
Sbjct: 185 RRMQEKARSLGAMDTHVVSPDGYDAPGQVSSAYDLAVFGRAGLQD-PAFTKYCSTAYADF 243

Query: 220 R----NRIITNHNKLLN------KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
                +  I N N+LL       +   + GIK GYT N+G  ++++ R  D  +V  VM 
Sbjct: 244 PAGSWSYGIANTNRLLTGADGVARYPGLIGIKNGYTSNAGNTLISAARRGDRTLVVSVMN 303

Query: 270 MPTSQ--ERDQKALELITSFL 288
                     ++A +L+    
Sbjct: 304 PQGGGGLAVYEEARDLLDWGF 324


>gi|1125682|emb|CAA60585.1| penicillin binding protein 4 [Staphylococcus aureus]
 gi|1125686|emb|CAA60582.1| penicillin binding protein 4 [Staphylococcus aureus]
          Length = 431

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 102/263 (38%), Gaps = 29/263 (11%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  D    PAS+TK+MT+Y+  E +   +L L+  + ++            S
Sbjct: 57  QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T    +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT +
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176

Query: 177 KNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G                 +  +TTARD AIL + + K  P+   +           
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------ 272
                N  L      +   DG+KTG +  + +N   + +     I  V+MG         
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296

Query: 273 SQERDQKALELITSFLEKKTLKH 295
            ++R+     L+    ++     
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVK 319


>gi|323442079|gb|EGA99713.1| penicillin binding protein 4 [Staphylococcus aureus O46]
 gi|333033712|emb|CBZ41973.1| penicillin binding protein 4 [Staphylococcus aureus]
          Length = 431

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 102/263 (38%), Gaps = 29/263 (11%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  D    PAS+TK+MT+Y+  E +   +L L+  + ++            S
Sbjct: 57  QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T    +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT +
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176

Query: 177 KNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G                 +  +TTARD AIL + + K  P+   +           
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------ 272
                N  L      +   DG+KTG +  + +N   + +     I  V+MG         
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296

Query: 273 SQERDQKALELITSFLEKKTLKH 295
            ++R+     L+    ++     
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVK 319


>gi|296113230|ref|YP_003627168.1| D-alanyl-D-alanine carboxypeptidase [Moraxella catarrhalis RH4]
 gi|295920924|gb|ADG61275.1| D-alanyl-D-alanine carboxypeptidase [Moraxella catarrhalis RH4]
          Length = 386

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 116/261 (44%), Gaps = 23/261 (8%)

Query: 43  SMASELHAKP---KYSSIVI-DVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKK 97
           S  +  +A P   + +++++ D+   ++   K  D  R  AS++K+MT  +I +     +
Sbjct: 125 SYTNSFYALPISTRSAAVLVYDLQDGKLIYGKNADVQRSIASISKVMTAMVILDA----E 180

Query: 98  LHLNTQIP-VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           L +  +I  ++        +   LK     T  +  L ++ RS N  + A      G   
Sbjct: 181 LDMREEITLIASDLIGAKQASTRLKAGDRMTRSEFTLMMLMRSENPAAKALARTYPGGYD 240

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG--------ILLRKNFPQY 208
            F + M+ KA  +GM  T + ++SGL D   +++A D  I+             +NF   
Sbjct: 241 AFIVAMNQKAYDLGMYQTKFSDSSGL-DPRNMSSANDLLIMMKAVNSSPRYHSIRNFSTA 299

Query: 209 YKY-FSIRKFRYRNRII--TNHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIV 264
             Y F I  +   +RI    N N+L+ +     G+ KTGY R +G+++V      + P +
Sbjct: 300 PHYDFYIANYGSGDRIYKGNNTNRLVREGAYPIGVQKTGYIREAGYSVVMETNINNRPAI 359

Query: 265 AVVMGMPTSQERDQKALELIT 285
            V++G   S  R   A  ++T
Sbjct: 360 VVLLGASNSANRWSDAETILT 380


>gi|329729569|gb|EGG65970.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 431

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 102/263 (38%), Gaps = 29/263 (11%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  D    PAS+TK+MT+Y+  E +   +L L+  + ++            S
Sbjct: 57  QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T    +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT +
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176

Query: 177 KNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G                 +  +TTARD AIL + + K  P+   +           
Sbjct: 177 VNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------ 272
                N  L      +   DG+KTG +  + +N   + +     I  V+MG         
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296

Query: 273 SQERDQKALELITSFLEKKTLKH 295
            ++R+     L+    ++     
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVK 319


>gi|323439395|gb|EGA97117.1| penicillin binding protein 4 [Staphylococcus aureus O11]
          Length = 431

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 102/263 (38%), Gaps = 29/263 (11%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  D    PAS+TK+MT+Y+  E +   +L L+  + ++            S
Sbjct: 57  QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T    +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT +
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176

Query: 177 KNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G                 +  +TTARD AIL + + K  P+   +           
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------ 272
                N  L      +   DG+KTG +  + +N   + +     I  V+MG         
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296

Query: 273 SQERDQKALELITSFLEKKTLKH 295
            ++R+     L+    ++     
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVK 319


>gi|258452851|ref|ZP_05700845.1| penicillin-binding protein 4 [Staphylococcus aureus A5948]
 gi|257859362|gb|EEV82216.1| penicillin-binding protein 4 [Staphylococcus aureus A5948]
          Length = 431

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 102/263 (38%), Gaps = 29/263 (11%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  D    PAS+TK+MT+Y+  E +   +L L+  + ++            S
Sbjct: 57  QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T    +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT +
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176

Query: 177 KNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G                 +  +TTARD AIL + + K  P+   +           
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------ 272
                N  L      +   DG+KTG +  + +N   + +     I  V+MG         
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296

Query: 273 SQERDQKALELITSFLEKKTLKH 295
            ++R+     L+    ++     
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVK 319


>gi|222150410|ref|YP_002559563.1| penicillin-binding protein 4 [Macrococcus caseolyticus JCSC5402]
 gi|222119532|dbj|BAH16867.1| penicillin-binding protein 4 [Macrococcus caseolyticus JCSC5402]
          Length = 429

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 59/273 (21%), Positives = 122/273 (44%), Gaps = 34/273 (12%)

Query: 57  IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           IVI     Q+      + ++P AS++K+MTLY++ + +   ++  NT++ V+      + 
Sbjct: 48  IVIAQKNGQVLYSDDADTKWPLASMSKLMTLYLLLQEMDKGEITFNTKVKVTDKFYNISK 107

Query: 116 ----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S   L+    +T ++ +  ++T S+N  +      ++ ++ +F   M+ +AK++GM
Sbjct: 108 LPALSNNNLRLNAVYTVDELMPIMLTNSSNAATYMLSSLVTKNDSEFIDKMNQEAKRLGM 167

Query: 172 QNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYF----- 212
            +T + N  G                +++ I++A+D AIL   L   +P   KY      
Sbjct: 168 NSTKFYNPVGAPNNLLNEYKAKKYPQNEDNISSAKDYAILCQHLVSEYPGILKYTKRVDV 227

Query: 213 SIRKFRYRNRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +++K          +N  L         +DG+KTG +  +GFN   + +  D  I+ V+M
Sbjct: 228 TVKKGTIDEETFHTYNHSLEGAKLGYKGVDGLKTGSSDTAGFNTAITGKKNDMRIIQVMM 287

Query: 269 GMPTSQE------RDQKALELITSFLEKKTLKH 295
           G+ +  +      R+  A  ++     +   K 
Sbjct: 288 GVESWYDPPAEFNRNIMANAIMDEVYNEYAYKK 320


>gi|283469938|emb|CAQ49149.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
           ST398]
 gi|298693973|gb|ADI97195.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 431

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 102/263 (38%), Gaps = 29/263 (11%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  D    PAS+TK+MT+Y+  E +   +L L+  + ++            S
Sbjct: 57  QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T    +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT +
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176

Query: 177 KNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G                 +  +TTARD AIL + + K  P+   +           
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------ 272
                N  L      +   DG+KTG +  + +N   + +     I  V+MG         
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296

Query: 273 SQERDQKALELITSFLEKKTLKH 295
            ++R+     L+    ++     
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVK 319


>gi|302874417|ref|YP_003843050.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           cellulovorans 743B]
 gi|307690977|ref|ZP_07633423.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           cellulovorans 743B]
 gi|302577274|gb|ADL51286.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           cellulovorans 743B]
          Length = 444

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 78/336 (23%), Positives = 138/336 (41%), Gaps = 40/336 (11%)

Query: 24  IQRNIQLMGKILFLSIIMIS-MASELHAKPKYS---SIVIDVNKNQMTGFKQ-DEPRYPA 78
           +++ I      L +S+ + + + SE   +P      +I +DVN  ++   K  D   YPA
Sbjct: 1   MKKTILTTMATLAISLTLSTKVFSEPLPEPNIVGQYAITLDVNTGEIIYAKNADAKAYPA 60

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS-----KLYLKEKTYFTTEQGIL 133
           S+TK+M+  ++      K L     +  +  A  Q  S     +L +      + +  + 
Sbjct: 61  SITKLMSAILL-----EKNLSKEDLLTYTANAKVQPSSAINTDRLSVPVGQQISADTALK 115

Query: 134 ALITRSANDVSTAFGEFI----SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK--NQ 187
            ++  SAND++      I    S    +F  +M+ +A+++GM NT +  ++GL D     
Sbjct: 116 TMLLASANDMTEMVATNIPKRNSNDNTEFIAMMNAEAQRLGMVNTHFVTSNGLDDNTNEH 175

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NRIITNHNKLLNK-----MHNI 237
           +TTA D  ILG  + KN P   + + ++          +  I N N+ +           
Sbjct: 176 LTTAYDLTILGREVAKN-PWTREIWPLKSTIIAIPGLASFEIGNTNQFVYPNFELHDPTC 234

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG---MPTSQERDQKALELITSFL--EKKT 292
            G KTGYT  +G  +++     +  I+ VV+     P          ++I      EKK 
Sbjct: 235 IGSKTGYTDKAGRCLLSIFERDNRQIIGVVLNSQLSPNDLVAFNDMKQIIDYSYSAEKKV 294

Query: 293 LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
           L+        N   TS KK   +  +   Y  FK  
Sbjct: 295 LEATDPATGVN---TSYKKDTTVLTVPVEYKVFKTF 327


>gi|302332352|gb|ADL22545.1| Serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 431

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 102/263 (38%), Gaps = 29/263 (11%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  D    PAS+TK+MT+Y+  E +   +L L+  + ++            S
Sbjct: 57  QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T    +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT +
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176

Query: 177 KNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G                 +  +TTARD AIL + + K  P+   +           
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------ 272
                N  L      +   DG+KTG +  + +N   + +     I  V+MG         
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296

Query: 273 SQERDQKALELITSFLEKKTLKH 295
            ++R+     L+    ++     
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVK 319


>gi|300769513|ref|ZP_07079399.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308181803|ref|YP_003925931.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|300492928|gb|EFK28110.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308047294|gb|ADN99837.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 444

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/361 (20%), Positives = 141/361 (39%), Gaps = 43/361 (11%)

Query: 5   KIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKN 64
           +     KK  +       +    + + G  L       + A+   +    ++I +D +  
Sbjct: 2   RFAGKLKKVMIALVAAVTFSTAGLGIAGADL------QAQAASTPSISAKAAIAVDASTG 55

Query: 65  QMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKLY 119
           Q+   K   +P   AS+TKM++ Y++ + +   KL  N +I VSK  A        + + 
Sbjct: 56  QILYDKNSSKPMAIASMTKMLSTYLVLKAIHEGKLSWNQKISVSKAVAKMSQNTEYANVP 115

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           L     ++  Q   A    SAN   TA G+ ++G+  KF  LM   AK  G+ +    NA
Sbjct: 116 LLSTKTYSVRQLYNATEIYSANAAITALGDAVAGTPHKFVSLMRKTAKSWGITDATIINA 175

Query: 180 SGLHDK---------------NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI- 223
           SGL +K                   +A+D A +   L  ++P+  K  SI    +     
Sbjct: 176 SGLTNKEVGSTIGYSNVAASAENEMSAQDVATVAQKLLSDYPEVLKTSSIAHAWFEKGTS 235

Query: 224 ----ITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVMGM-- 270
               + N N +L  +        +DG+KTG +  +G     +++    + I+ VVM    
Sbjct: 236 SATKMDNRNYMLKGLVKHYSALPVDGLKTGTSTKAGNAFTGTVKFSNGNRIITVVMHAGA 295

Query: 271 --PTSQERDQKALELITSFL-EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
              +  ER  +  E+++       T    +  + + + +  ++    +     + S   K
Sbjct: 296 ANDSGTERFTQTAEIMSYVYHNYTTTTINKNGKINGVKAVDVQDGKSLTSQLVSNSGATK 355

Query: 328 I 328
           I
Sbjct: 356 I 356


>gi|330960895|gb|EGH61155.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 311

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 61/288 (21%), Positives = 120/288 (41%), Gaps = 33/288 (11%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP------------KYSSIVIDVNKNQMTGFKQ 71
           ++  + ++G +  L+  ++S A+  +                 S++VID+  +++     
Sbjct: 1   MKIRLSVLGLLCVLTGPVLSTATFANETAVLNRDPSNLHLASGSAMVIDLQTDKVLYSSN 60

Query: 72  DEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL----KEKTYF 126
            +   P AS+TK+MT  ++ +     K  ++  IPV+    +Q P    +    K  +  
Sbjct: 61  PDVIVPIASVTKLMTAMVVLDA----KQSMDEVIPVN---ISQTPEMKGVFSRVKLGSEM 113

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
                +L  +  S N  + +      G    F + M+ KAK +GM++T Y   +GL   N
Sbjct: 114 NRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKALGMKHTAYVEPTGLSVYN 173

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSI--RKFRYRNRIIT----NHNKLLNKM-HNIDG 239
            ++TARD   L +  RK +P   +  +   +   +R    T    N + L++K   +I  
Sbjct: 174 -VSTARDLTKLVMAARK-YPMLSELSTTEQKTVTFRKPTYTLGFSNTDHLVHKDNWDIKL 231

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
            KTG+T  +G  +V      + P+  V++           A  +    
Sbjct: 232 TKTGFTNQAGHCLVLLTTMANRPVSVVILDAFGKYTHFADASRIRKWM 279


>gi|260587729|ref|ZP_05853642.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Blautia hansenii DSM
           20583]
 gi|260541994|gb|EEX22563.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Blautia hansenii DSM
           20583]
          Length = 301

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/232 (27%), Positives = 93/232 (40%), Gaps = 13/232 (5%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++I++D    Q+ G K  E + YPASLTK+MT+ +  E L + +     +  +      Q
Sbjct: 52  AAILLDEE-GQILGRKNSEKKIYPASLTKIMTVLLSIEKLDNIREITVLREEIFPELYAQ 110

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           + S          T    +   +  S  +   A  E   GSEK+F   M+ KAKK+GM+N
Sbjct: 111 DASMAGFLPGEKVTYRDLLYGAMLPSGAECCVALAEGSCGSEKEFVSEMNKKAKKLGMKN 170

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKN------FPQYYKYFSIRKFRYRNRIITNH 227
           T + N +GLHD N  TT  D + L     KN      F  +                 + 
Sbjct: 171 THFTNTTGLHDDNHYTTVEDLSRLLCYAMKNQDFSKIFTAFSYSVPATNKHPEGFTFFST 230

Query: 228 -----NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                 K   K   I G KTGYT N+G  + T+          +      S 
Sbjct: 231 LSQELQKAGVKDSCILGGKTGYTSNAGLCLATAAEINGKKYFFITAHAQGSH 282


>gi|148653230|ref|YP_001280323.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Psychrobacter
           sp. PRwf-1]
 gi|148572314|gb|ABQ94373.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Psychrobacter
           sp. PRwf-1]
          Length = 344

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 105/250 (42%), Gaps = 20/250 (8%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKK--LHLNTQIPVSKTAATQ 113
           IV+DV   +    K  D  R  AS+TK+MT  ++ +     +  + L+ +  V    A+ 
Sbjct: 102 IVLDVETGKPLYQKNADVARPIASITKIMTAMVVLDAGLDMREEIKLDPEDFVGPKRASS 161

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
                 LK        + +L  + +S N  + +      G    F   M+ KA+ +GM +
Sbjct: 162 -----RLKSGDRMNRAELLLMALMKSENPAAKSLARNYPGGYDAFMRAMNAKARSLGMTS 216

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-------RNRII-- 224
             + + +GL DK  + +  D A +       +    ++ + + + +        NR    
Sbjct: 217 AFFGDPTGL-DKRNVASPVDLAKMVQAA-GQYEVIRRFSTTKNYDFYVANYSAGNRPYPA 274

Query: 225 TNHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            N +KL+       GI KTG+   +G  +V   R  + P + V++G   S  R   A  +
Sbjct: 275 NNTSKLVRSGTYPIGISKTGFINEAGQCVVMETRVNNKPAIIVILGADNSNTRWNDAETI 334

Query: 284 ITSFLEKKTL 293
           +T+   ++T+
Sbjct: 335 LTNLASRRTI 344


>gi|313906127|ref|ZP_07839476.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Eubacterium
           cellulosolvens 6]
 gi|313469014|gb|EFR64367.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Eubacterium
           cellulosolvens 6]
          Length = 544

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 95/236 (40%), Gaps = 29/236 (12%)

Query: 57  IVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAAT 112
           I++D+N NQ          YPAS+TK+MT  +  E++     +L   +  +      A T
Sbjct: 301 IILDMNSNQ--------RIYPASMTKIMTTLVAIEHI----TNLEDTVTFTGGEYDRAYT 348

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           +  +          +    +  ++  S  D   A  + + GSE  F  +M+ KA+++GM 
Sbjct: 349 EGATTANFMAGDVVSYNDVLYGIMLPSGADACYAIADALGGSEAGFVNMMNEKAQQLGMN 408

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKN------FPQYYKYFSIRKFRYRNRIITN 226
           +T + N +GL +++  TT  D   L     +N      F  +               +++
Sbjct: 409 DTHFTNCTGLTNEDHYTTCADMIKLLQAALQNETFKTVFCTHVHTTGPLGLNPDGLQLSS 468

Query: 227 H------NKLLNKMHNIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVMGMPTSQE 275
                  + LL     I G KTG+T  +G  + +  +       + V  G  T ++
Sbjct: 469 TAFTYLGSPLLQNGTEITGTKTGFTDEAGHCLASCAKAGDGTEYILVTAGANTEED 524


>gi|330953321|gb|EGH53581.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae Cit 7]
          Length = 311

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 60/288 (20%), Positives = 117/288 (40%), Gaps = 33/288 (11%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP------------KYSSIVIDVNKNQMTGFKQ 71
           ++  +  +G +  L+  ++S  +  +                 S++VID+  +++     
Sbjct: 1   MKIRLSFLGLLFVLTGPVLSTPTLANEPAVLNRDPSNLHLASGSAMVIDLQTDKVLYSSN 60

Query: 72  DEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL----KEKTYF 126
            +   P AS+TK+MT  ++ +  Q     ++  IPV+    +Q P    +    K  +  
Sbjct: 61  PDVIVPIASVTKLMTAMVVLDAKQP----MDEVIPVN---ISQTPEMKGVFSRVKLGSEM 113

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
                +L  +  S N  + +      G    F + M+ KAK +GM++T Y   +GL   N
Sbjct: 114 NRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKALGMKHTAYVEPTGLSVYN 173

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSI--RKFRYRNRIIT----NHNKLLNKM-HNIDG 239
            ++TARD   L +  RK +P   +  +   +   +R    T    N + L+ K   +I  
Sbjct: 174 -VSTARDLTKLVMAARK-YPLLSELSTTEQKTVTFRKPTYTLGFSNTDHLVRKDNWDIKL 231

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
            KTG+T  +G  +V      + P+  V++           A  +    
Sbjct: 232 TKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYTHFADASRIRKWM 279


>gi|210614029|ref|ZP_03290008.1| hypothetical protein CLONEX_02221 [Clostridium nexile DSM 1787]
 gi|210150881|gb|EEA81889.1| hypothetical protein CLONEX_02221 [Clostridium nexile DSM 1787]
          Length = 325

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 12/232 (5%)

Query: 55  SSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           + IVI ++ +++   F+QDE  +PASLTK+MT  +  E + + +  +  +  +      Q
Sbjct: 74  AGIVISLDDSKVIFQFQQDEKIFPASLTKIMTCILAIENINNLEATITLEPEIFDELYAQ 133

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           N S               +   I  S  + S A  E+++GSE+ F  LM+ KAK +GM N
Sbjct: 134 NASMAGFLPGENAKIIDILYGNILPSGGECSIALAEYVAGSEQAFVELMNEKAKDLGMNN 193

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYK---YFSIRKFRY-RNRIITNH 227
           T + NA+GLH+++  TT +D  IL     KN  F   ++   YF     ++       + 
Sbjct: 194 THFMNATGLHNESHYTTVKDIGILLQYALKNQTFNDIFQSKSYFVAPTDQHLSGFTFYSS 253

Query: 228 NKLLNKMH-----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
              L          I G KTGYT  +G  + +         +A+ +    + 
Sbjct: 254 MFKLRDQWELDEGEIVGGKTGYTDEAGLCLASEAIVNGRKYIAITVNAEGNH 305


>gi|28379575|ref|NP_786467.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           WCFS1]
 gi|28272415|emb|CAD65338.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           WCFS1]
          Length = 444

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/361 (20%), Positives = 141/361 (39%), Gaps = 43/361 (11%)

Query: 5   KIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKN 64
           +     KK  +       +    + + G  L       + A+   +    ++I +D +  
Sbjct: 2   RFAGKLKKVMIALVAAVTFSTGGLGIAGADL------QAQAASTPSISAKAAIAVDASTG 55

Query: 65  QMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKLY 119
           Q+   K   +P   AS+TKM++ Y++ + +   KL  N +I VSK  A        + + 
Sbjct: 56  QILYDKNSSKPMAIASMTKMLSTYLVLKAIHEGKLSWNQKISVSKAVAKMSQNTEYANVP 115

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           L     ++  Q   A    SAN   TA G+ ++G+  KF  LM   AK  G+ +    NA
Sbjct: 116 LLSTKTYSVRQLYNATEIYSANAAITALGDAVAGTPHKFVSLMRKTAKSWGITDATIINA 175

Query: 180 SGLHDK---------------NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI- 223
           SGL +K                   +A+D A +   L  ++P+  K  SI    +     
Sbjct: 176 SGLTNKEVGSTIGYSNVAASAENEMSAQDVATVAQKLLSDYPEVLKTSSIAHAWFEKGTS 235

Query: 224 ----ITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVMGM-- 270
               + N N +L  +        +DG+KTG +  +G     +++    + I+ VVM    
Sbjct: 236 SATKMDNRNYMLKGLVKHYSALPVDGLKTGTSTKAGNAFTGTVKFSNGNRIITVVMHAGA 295

Query: 271 --PTSQERDQKALELITSFL-EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
              +  ER  +  E+++       T    +  + + + +  ++    +     + S   K
Sbjct: 296 ANDSGTERFTQTAEIMSYVYHNYTTTTINKNGKINGVKAVDVQDGKSLTSQLVSNSGATK 355

Query: 328 I 328
           I
Sbjct: 356 I 356


>gi|253682534|ref|ZP_04863331.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum D
           str. 1873]
 gi|253562246|gb|EES91698.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum D
           str. 1873]
          Length = 444

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 122/299 (40%), Gaps = 46/299 (15%)

Query: 35  LFLSIIMISMASELHAKPKY--SSIVIDVNKNQMTGFKQDE--PRYPASLTKMMTLYIIF 90
           +FLS    + A+ L+A      S+IV+D    ++   K  +  P YPAS        ++ 
Sbjct: 14  IFLSFCSTAFATTLNAPSVVGKSAIVVDAKTGEVIYAKNVDTSPMYPAST-----TKLLT 68

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLY------LKEKTYFTTEQGILALITRSANDVS 144
             L ++       +  +  A+ Q    L       LK     + +  +  L+  SAND++
Sbjct: 69  ALLLAENKQPTDILTYTDGASKQPEYTLRSFLKGKLKVGDKMSADDAMKGLLLHSANDIA 128

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK--NQITTARDQAILGILLR 202
               E ++G+   FA +M+NK KK+G+ +T +   +GL +   N  T+A D +I+G    
Sbjct: 129 YMIAENVAGNVDNFAKMMNNKIKKLGLTHTHFVTPNGLDNGITNHYTSAYDLSIIGKAAY 188

Query: 203 KNFPQYYKYFSIRKFRY--RNRII---TNHNKLLNKMHN--------------------I 237
           +N     K  S++K +    N ++    N NKLL +  +                     
Sbjct: 189 EN-EWVRKTMSLKKDKIELTNGVLGYPENRNKLLGQTLDSNFNSKISINIKNVPVSNAIC 247

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKKTL 293
            G KTGYT  +G  +V         ++ VVM     +          ++I     +K +
Sbjct: 248 IGGKTGYTSKAGRCLVAMFNKDGRILIGVVMKSAYDKNDTYVFNDMAKIINWAYSEKQV 306


>gi|94987880|ref|YP_595981.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS9429]
 gi|94541388|gb|ABF31437.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
           pyogenes MGAS9429]
          Length = 393

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 77/337 (22%), Positives = 144/337 (42%), Gaps = 51/337 (15%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHA-------------KPKYSSIVIDVNKNQMTGFKQ 71
           +R I  +   +  S++ +  A ++               +PK SSIV+D N + +     
Sbjct: 3   KRIILTIFTFICFSMMPLVHAEDVMDITRQAGYTVSEVNRPK-SSIVVDANSSDILWQDN 61

Query: 72  -DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYF 126
            D PR PAS++KM TLYI+FE L   K+ ++T I  + T    A     S   +     +
Sbjct: 62  IDIPRDPASMSKMFTLYILFEELAKGKITMDTTITATPTDQAIANIYEISNNNIVAGVAY 121

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLHDK 185
                I      S+N  +     ++S ++   F   ++  AK++GM NT + NASG   +
Sbjct: 122 PIRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRINATAKQLGMTNTHFSNASGAAAQ 181

Query: 186 ---------------NQITTARDQAILGILLRKNFPQYYKYF------SIRKFRYRNRII 224
                          + ITTARD + L     + +P+   +       ++    Y     
Sbjct: 182 AFQGYYNPTKYDLSASNITTARDLSKLLYTFLRKYPEIISFTNKSVVHTMVGTPYEEEFH 241

Query: 225 TNHNKLLN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
           T ++ L +    M  +DG+KTG + ++ FN + + +     ++ +VMG+    +++ +  
Sbjct: 242 TYNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKRGKTRLITIVMGVGDWSDQNGEFY 301

Query: 282 E--LITSFLEK-----KTLKHQQTHRKDNLSSTSLKK 311
               + +  EK     KTL  +   + + L   + K+
Sbjct: 302 RHPFVNALTEKGFKDSKTLSKKARQKLEKLVPQTKKE 338


>gi|329119331|ref|ZP_08248017.1| D-alanyl-D-alanine carboxypeptidase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464476|gb|EGF10775.1| D-alanyl-D-alanine carboxypeptidase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 314

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 115/258 (44%), Gaps = 16/258 (6%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHL 100
            ++A  L A    S+++++    ++   K      P AS++K+M+  +  +     +L++
Sbjct: 63  AAIAGPLLA--SQSALILNNRTGEVLYQKNMNRVMPIASISKLMSAMVTLDA----RLNM 116

Query: 101 NTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           N  I +++    +   +   L   T  T  Q +   +  S N  + A G    G    F 
Sbjct: 117 NEVITITEDEIDRIKGTGSRLSIGTQLTRAQLLHLSLMSSENRATHALGRTYPGGMAAFV 176

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-----KYFSI 214
             M+ KA+ +GM ++ +   +GL  +N ++TA D + +     K +PQ        Y S+
Sbjct: 177 AAMNAKAQSLGMADSRFYEPTGLDYRN-VSTASDLSKMVAAAAK-YPQIRSNSTSTYGSV 234

Query: 215 RKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                R +   N N L+     +I+  KTGY R SG ++V   R   +P+  V++  PT+
Sbjct: 235 YTSAGRQQNYKNSNALVREGTWDIELQKTGYIRESGRSMVVKARIGSEPVTIVLLNSPTT 294

Query: 274 QERDQKALELITSFLEKK 291
             R   A  + +  L ++
Sbjct: 295 TTRVNDARSIQSWMLTQR 312


>gi|328954968|ref|YP_004372301.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Coriobacterium
           glomerans PW2]
 gi|328455292|gb|AEB06486.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Coriobacterium
           glomerans PW2]
          Length = 452

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 118/301 (39%), Gaps = 35/301 (11%)

Query: 56  SIVIDVNKNQMTGFK--QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +IV+  +   +  F+   D     AS+TK+MT  +   + +      +  I V + AAT 
Sbjct: 71  AIVMGRDG--ICYFERDADAQVKIASITKVMTALVALSHGKK-----SETIAVDRAAATV 123

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--------KFAILMSNK 165
             +  +L+E    + E  +  L+  S ND + A    I              F   M+ K
Sbjct: 124 GEASAHLREGDALSLEDALRCLLIPSGNDAALAIATAIGSEIDPTSSDPDGVFVNAMNEK 183

Query: 166 AKKIGMQNTIYKNASGLHDK----NQITTARDQAILGILLRKN--FPQYYKY----FSIR 215
           AK++G   T + N  GL       +  +TARD AI+     ++  F           ++R
Sbjct: 184 AKQLGCTGTNFTNPHGLDMDPWAGDMHSTARDVAIMVAAAMRDDTFRSIVGTGAARVTVR 243

Query: 216 KFRYRNRIITNH--NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                +R +     N++LN   NI G+KTG T  +G+    +     + +  VV+G  TS
Sbjct: 244 SADGASRTLELSDVNQMLNAQGNI-GVKTGTTDEAGYCFAGAFSRDGNEVYTVVLGANTS 302

Query: 274 QERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAH 333
           Q+R   +  L T +       H +     +   T      +I +   T    + +D    
Sbjct: 303 QQRFDDSASLATWYY-----AHAKRKPAVSTDRTGAGGEALIARATCTDWSDRTVDVTTK 357

Query: 334 S 334
            
Sbjct: 358 D 358


>gi|152980485|ref|YP_001353523.1| D-alanyl-D-alanine carboxyopeptidase [Janthinobacterium sp.
           Marseille]
 gi|151280562|gb|ABR88972.1| D-alanyl-D-alanine carboxyopeptidase [Janthinobacterium sp.
           Marseille]
          Length = 274

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 63/271 (23%), Positives = 113/271 (41%), Gaps = 18/271 (6%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYS--SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTL 86
           ++  ILF  ++ I+ AS   A P  S  +IVID    Q+   K      P ASLTK+MT 
Sbjct: 1   MIRSILF--VVAITAASSAFATPVGSKHAIVIDEGTGQVVFEKNATDIVPIASLTKLMTA 58

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVST 145
            ++ +     K  ++ +I +++        S   +     F+  + +   +  S N  + 
Sbjct: 59  MVVLDA----KPDMHERISITEDDVDTLKFSSSRVPVGAVFSRHELLELALMSSDNRAAH 114

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A      G  + F + + +KA  + ++ T  +  +GL      +TA D A L +   K +
Sbjct: 115 ALARSYPGGLEHFKVAVRSKAHMLNLRRTNIEEPTGLS-PYNTSTASDLAKLALAASK-Y 172

Query: 206 PQYYKYFSIR----KFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           P   +  ++         R R   N N+L+  K   I   KTGYT+ +G  I+  +    
Sbjct: 173 PDIERITTVSNDLIDVNGRMRQYHNTNRLVGDKNWTISLSKTGYTQEAGRCIIMRVHAAG 232

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEKK 291
              + V++    +  R   A   +   L K+
Sbjct: 233 RDAIMVLLNARGNANRTADA-NYLHRLLTKE 262


>gi|1864022|gb|AAB50178.1| pencillin binding protein 4 [Staphylococcus aureus]
          Length = 431

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 56/263 (21%), Positives = 102/263 (38%), Gaps = 29/263 (11%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  D    PAS+TK+MT+Y+  E +   +L L+  + ++            S
Sbjct: 57  QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T    +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT +
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176

Query: 177 KNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G                 +  ++TARD AIL + + K  P+   +           
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQEATVSTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------ 272
                N  L      +   DG+KTG +  + +N   + +     I  V+MG         
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296

Query: 273 SQERDQKALELITSFLEKKTLKH 295
            ++R+     L+    ++     
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVK 319


>gi|257440394|ref|ZP_05616149.1| putative D-alanyl-D-alanine carboxypeptidase [Faecalibacterium
           prausnitzii A2-165]
 gi|257197143|gb|EEU95427.1| putative D-alanyl-D-alanine carboxypeptidase [Faecalibacterium
           prausnitzii A2-165]
          Length = 439

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 54/292 (18%), Positives = 115/292 (39%), Gaps = 27/292 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           ++++I ++  +L  ++   +  +           +  +ID +   +   +  +E  +PAS
Sbjct: 1   MKKHIAMLCAVLLTALAAFAPGAAAAGPALTATEAYCIIDADTGLVLAQQNMNEELHPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLN-TQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILA 134
           +TK+MTL +  E     +   +  ++ VS       A  + S + L+E         + A
Sbjct: 61  ITKVMTLGLACE---KAQGKWDNVKLTVSHEDVYSLAGTDSSHIALQEGEEVPLTDALYA 117

Query: 135 LITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            +  SAND +    E+  G S +     M+ +AK++G+++T + N  G+ D++  T+  D
Sbjct: 118 TMMASANDGANLLAEYFGGGSIEGGVAAMNAQAKELGLEHTHFANPHGISDEDHYTSCYD 177

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRN--------RIITNHNKL-----LNKMHNIDGI 240
            A +        P +   F+  +             R     +K+        +  I G 
Sbjct: 178 MAQILRWALTQ-PGFETLFTRNEMYTMGPTNVQPVTRYFHQQDKMRVGSSRYYIPAILGS 236

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           K GYT  + ++ V         ++ V M      ++      L+     + T
Sbjct: 237 KIGYTNIARYSYVCLAEQNGVRLICVTMQSQIKTDKYNDVRTLLDDAFARYT 288


>gi|238028027|ref|YP_002912258.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           glumae BGR1]
 gi|237877221|gb|ACR29554.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           glumae BGR1]
          Length = 379

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 99/238 (41%), Gaps = 13/238 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + V+D   ++    K      P AS++K+MT  ++ +     K  L  QI V+       
Sbjct: 129 AYVVDQATSEPLFDKNSRAVVPIASISKLMTAMVVLDS----KAPLEEQIEVTDADRDYE 184

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +   L   +  + E  +   +  S N  + A   +  G    F   M+ KAK +GM +
Sbjct: 185 KGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMNAKAKALGMTD 244

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T ++N++GL   N +++ARD   +     + +P   ++ + R +      R+ +  + N 
Sbjct: 245 THFENSTGLTSLN-VSSARDLVKMIDAAYQ-YPLIRRFSTDRTYTVFTGKRSLVYNSTNA 302

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L+ N   +I   KTG+   +G  +V        PIV V++       R   A  +   
Sbjct: 303 LVRNPSWDIGLQKTGFINEAGECLVMQATIHGRPIVMVLLDSFGKYSRTADAARVRNW 360


>gi|291550390|emb|CBL26652.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus torques L2-14]
          Length = 343

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 63/258 (24%), Positives = 117/258 (45%), Gaps = 25/258 (9%)

Query: 54  YSSIVIDVNKNQM-TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +++ + ++N   +  G+K  +  YPAS TK+MT Y+ F+Y      +++  + VS + ++
Sbjct: 91  HAAGLFNLNDKTVEYGYKLYDKLYPASTTKLMTAYLAFKYG-----NMDDIVTVSDSVSS 145

Query: 113 --QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
              +     L+     T    +  L+ RS ND   A  E ISGS + FA LM+++AK +G
Sbjct: 146 FASDEVVCNLQPGDTVTLYDLLCGLLLRSGNDCGVAIAEHISGSVEAFAELMNSEAKALG 205

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF---------RYRN 221
              + + N  GLH++N  TTA D  ++     ++  ++    S+  +           R 
Sbjct: 206 ATGSHFVNPHGLHNENHYTTAYDLYLIFNACIQD-QRFMDIISMDSYTMNLTGADGTTRT 264

Query: 222 RIITNHNKL----LNKMHNI--DGIKTGYTRNSGFNIVTSLRY-KDDPIVAVVMGMPTSQ 274
             +   N      +N    I   G KTG T  +G  ++      + +P ++++MG     
Sbjct: 265 FDVVPTNYYSSGKINAPEGIRVFGGKTGTTDEAGCCVILYSEDLEKNPYISIIMGAEDKG 324

Query: 275 ERDQKALELITSFLEKKT 292
              Q+   L+ +    KT
Sbjct: 325 FLYQEMNRLLEAGETTKT 342


>gi|300854622|ref|YP_003779606.1| D-alanyl-D-alanine carboxypeptidase [Clostridium ljungdahlii DSM
           13528]
 gi|300434737|gb|ADK14504.1| D-alanyl-D-alanine carboxypeptidase precursor [Clostridium
           ljungdahlii DSM 13528]
          Length = 325

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 110/242 (45%), Gaps = 20/242 (8%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
            +++I+I +        K  +E  YPASLTKMMT  +  E L +    LN ++ ++ +A 
Sbjct: 73  SHNAILIRLKDQTTLMQKNSEEKIYPASLTKMMTAIVAIENLPN----LNEEVKLTNSAF 128

Query: 112 ----TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                ++ S    +     T    +  ++  S  +      E I+GSE+ F  +M+ KA 
Sbjct: 129 HELHGEDASMAGFQPNEQVTALDLLYGILLPSGAECCIGLAEQIAGSEQNFVKMMNQKAA 188

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYK--YFSIRKFRYRNRI 223
           ++GM+NT ++N +GL ++N  TT +D AIL     +N  F + +     S +        
Sbjct: 189 ELGMRNTHFENTTGLQNENHYTTVKDLAILLSYALQNDTFREIFTSSRHSTQPTNKHPGG 248

Query: 224 ITNHNKLLNKMHN-------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
           IT ++ +   ++N       I G KTGYT  +G  + +  +      + +  G       
Sbjct: 249 ITFYSTMFKGLNNQNIIGGEILGGKTGYTNEAGLCLASLAKVGKQDYILISAGAKGDHNS 308

Query: 277 DQ 278
           +Q
Sbjct: 309 EQ 310


>gi|312862810|ref|ZP_07723050.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           vestibularis F0396]
 gi|322516764|ref|ZP_08069670.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           vestibularis ATCC 49124]
 gi|311101670|gb|EFQ59873.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           vestibularis F0396]
 gi|322124686|gb|EFX96138.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           vestibularis ATCC 49124]
          Length = 448

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 75/355 (21%), Positives = 141/355 (39%), Gaps = 53/355 (14%)

Query: 25  QRNIQLMGKILFLSIIMISMASEL-------------HAKPKYSSIVIDVNKNQMTGFKQ 71
           ++ + ++          +S A EL              A    S+++ID     +   + 
Sbjct: 3   KKIVSILLSACLALAPSLSSADELMDITRAAGYTEATEAYRPKSTLLIDGTTGDVLWEEN 62

Query: 72  -DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEKTYF 126
            DE R PAS++K MTLY++FE +   ++  +T I  + T    A     S   +     +
Sbjct: 63  ADEIRDPASMSKAMTLYLVFEAMSKGEISEDTVITATPTDQAIADIYEISNNKIVAGVDY 122

Query: 127 TTEQGILALITRSANDVSTAFGEFI-SGSEKKFAILMSNKAKKIGMQNTIYKNASGL--- 182
           T  + I      S+N  +     ++ + +  K+  +M+ K+K++GM NT + NASG    
Sbjct: 123 TVSELITMTAVPSSNVTTVMLANYLTNNNPDKWLDMMNEKSKELGMTNTKWFNASGAVAV 182

Query: 183 ------------HDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIIT 225
                       +++   TTARD AI+     K +P+  KY S     ++K         
Sbjct: 183 AFKGYYSPQRYDNNQTNQTTARDLAIMTYNFIKKYPKILKYTSKPVVTVKKGTPYEETFE 242

Query: 226 NHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK-- 279
            +N  +      +  +DG+KTG +    FN + +++  +  ++AV+MG     ++  +  
Sbjct: 243 TYNYSIPGAKYGIDGVDGLKTGSSPEGAFNYIDTIKRGNQRMIAVIMGSGDWSDQTGEEI 302

Query: 280 --------ALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
                     ++   F  KK L   +        +        +KK K      K
Sbjct: 303 RHTFGNALVEKMYKDFSYKKVLSKGEQEIDGKKYNVEKDVYATVKKGKDPKISVK 357


>gi|126434529|ref|YP_001070220.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
           sp. JLS]
 gi|126234329|gb|ABN97729.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
           sp. JLS]
          Length = 264

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 10/229 (4%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           + A  L   P  + ++ D++  ++   +   EP  PAS  K++   ++ ++L        
Sbjct: 22  AGAVALPEGPAQAWLLADLDSGRVLASRNPYEPHAPASTIKVLLAMVVLDHLSPDNFA-- 79

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
                +++      S + L     +TT Q + AL+  S ND +    + + G        
Sbjct: 80  ---RANRSHTEVECSCVGLTPGQPYTTRQLLSALLMVSGNDAANMLADMLGGQRAA-VAA 135

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKN--QITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
           M+ KA  +G ++T   + SGL       ITT  D A++      N+P   +        +
Sbjct: 136 MNRKAALVGAKSTRASSPSGLDGPGWESITTPHDLAVMLRAAL-NYPLIAQIMRSPTAPF 194

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             + +TN N+LL++       KTG+T  +    V + +  +  +  V M
Sbjct: 195 PGKTLTNQNELLSRYPGDIAGKTGFTNLARKTYVGAAQRGNRRLAVVQM 243


>gi|186476224|ref|YP_001857694.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           phymatum STM815]
 gi|184192683|gb|ACC70648.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           phymatum STM815]
          Length = 387

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 101/240 (42%), Gaps = 17/240 (7%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + V+D N ++    K      P AS+TK+MT  ++ +     K  +  QI V+       
Sbjct: 137 AYVVDQNTSESLFDKNSRAVVPIASITKLMTAMVVLDS----KAAMTEQIEVTDEDRDYE 192

Query: 115 ---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S+  L   +  + E  +   +  S N  + A   +  G    F   M+ KAK +GM
Sbjct: 193 KNTGSR--LSVGSVLSREDMLHIALMASENRAAAALSRYFPGGRPAFMAAMNAKAKALGM 250

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNH 227
            +T ++N +GL  +N +++ARD   +     + +P   K+ + R +      R+    + 
Sbjct: 251 TDTHFENPTGLTSQN-VSSARDLVKMVNAAYQ-YPLIRKFSTDRSYEVYTGKRSIAYNST 308

Query: 228 NKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           N L+       G+ KTG+   +G  +V      D P++ V++       R   A  L T 
Sbjct: 309 NALVRNPSWEIGLQKTGFINEAGECLVMQATIHDRPMIMVLLDSSGKYSRFADAQRLRTW 368


>gi|108798929|ref|YP_639126.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
           sp. MCS]
 gi|119868044|ref|YP_937996.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
           sp. KMS]
 gi|108769348|gb|ABG08070.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
           sp. MCS]
 gi|119694133|gb|ABL91206.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
           sp. KMS]
          Length = 264

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 10/229 (4%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           + A  L   P  + ++ D++  ++   +   EP  PAS  K++   ++ ++L        
Sbjct: 22  AGAVALPEGPAQAWLLADLDSGRVLASRNPYEPHAPASTIKVLLAMVVLDHLSPDNFA-- 79

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
                +++      S + L     +TT Q + AL+  S ND +    + + G        
Sbjct: 80  ---RANRSHTEVECSCVGLTPGQPYTTRQLLSALLMVSGNDAANMLADMLGGQRAA-VAA 135

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKN--QITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
           M+ KA  +G ++T   + SGL       ITT  D A++     K +P   +        +
Sbjct: 136 MNRKAALVGAKSTRASSPSGLDGPGWESITTPHDLAVMLRAALK-YPLIAQIMRSPTAPF 194

Query: 220 RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             + +TN N+LL++       KTG+T  +    V + +  +  +  V M
Sbjct: 195 PGKTLTNQNELLSRYPGDIAGKTGFTNLARKTYVGAAQRGNRRLAVVQM 243


>gi|253997956|ref|YP_003050019.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylovorus
           sp. SIP3-4]
 gi|253984635|gb|ACT49492.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylovorus
           sp. SIP3-4]
          Length = 330

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 96/240 (40%), Gaps = 15/240 (6%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ- 113
           +++++    ++   K  D+    AS+TK+MT  ++ +      L ++  + +++      
Sbjct: 86  ALIVNQETGEVLYAKSVDQATPIASVTKLMTAMVMLDAH----LPMDELLTINEADVDTL 141

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +   L+  T  T  + +   +  S N  ++A G    G    F   M+ KA  +GM +
Sbjct: 142 KGTSSRLRLGTTLTRAEMLHLALMSSENRAASALGRNYPGGLTAFIRAMNAKASMLGMAH 201

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY------RNRIITNH 227
           + + + +GL+  N I+TA D   +     + +P+  +  +                  N 
Sbjct: 202 SQFVDPTGLNSAN-ISTAEDLVKMVRAAYQ-YPEIRQVSTSASQEVPVYGLRNPINFVNT 259

Query: 228 NKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           N L+     + G+ KTG+   +G  +V        P++ V++       R   A  +   
Sbjct: 260 NVLVRNSDWVIGLSKTGFINEAGRCLVMQAEIAGQPMIIVLLDSYGKYSRIGDAQRIRKW 319


>gi|238854687|ref|ZP_04645017.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           jensenii 269-3]
 gi|282932922|ref|ZP_06338319.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           jensenii 208-1]
 gi|238832477|gb|EEQ24784.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           jensenii 269-3]
 gi|281302957|gb|EFA95162.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           jensenii 208-1]
          Length = 395

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 71/341 (20%), Positives = 141/341 (41%), Gaps = 40/341 (11%)

Query: 27  NIQLMGKILFLSIIMISMA------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PAS 79
            + L G ++   I +I+++      +++ +    ++ ++D    Q+   +    +Y  AS
Sbjct: 7   KLGLAGIVVLWIIGIINLSFFNIVKADVQSVNAKAAFMMDEKTGQILYQRNATKKYAVAS 66

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN----PSKLYLKEKTYFTTEQGILAL 135
           LTK++TL +I E +   KL  + +I +SK  A        S + L     +T    I ++
Sbjct: 67  LTKILTLAVIMEDIHKHKLDWDQEIQISKDVAKVADDWHFSNVPLVYNERYTVRSLIESM 126

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------------- 182
           +  SA+  + A     +GS   F   M   AK+ G++N    N  GL             
Sbjct: 127 MIVSADGSTEALALADAGSVAAFNYKMKVVAKRAGVKNPEIYNMIGLSNGELGDLKLPKI 186

Query: 183 -HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLLNKMHN 236
             ++    +A+D A++   L   +P+       +   +         + N   +L  M  
Sbjct: 187 DDNQENQFSAKDMALVSKYLIDKYPEVLNITKTKYANFKIRQDNEMKMENIIYMLEGMGY 246

Query: 237 ------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS-QERDQKALELITSFLE 289
                 +DG+KTG T  +G+  V +  + +  ++ VV+ +P     +  +   +I +  +
Sbjct: 247 GPKKGTMDGLKTGKTDAAGYCYVGTGTFDNRRVITVVLDVPGEYSNQFIQTNNMIDTVFD 306

Query: 290 KKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
           K  L       K+NL     K ++  KK K+  S   + D+
Sbjct: 307 KYQLVK---VDKNNLPKKYQKITITSKKQKKKISVVPEKDS 344


>gi|238021454|ref|ZP_04601880.1| hypothetical protein GCWU000324_01354 [Kingella oralis ATCC 51147]
 gi|237868434|gb|EEP69440.1| hypothetical protein GCWU000324_01354 [Kingella oralis ATCC 51147]
          Length = 336

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 58/247 (23%), Positives = 98/247 (39%), Gaps = 26/247 (10%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+++++    Q+   K     R  AS++K+M+  ++ +      L +N QI +++   
Sbjct: 96  AQSALIMNAKTGQVLYQKNMSSVRSIASISKLMSAMVLLDAH----LDMNEQITITEAEI 151

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   +   L   T  T  Q +   +  S N    A      G    F   M+ KA+ +G
Sbjct: 152 DRLKGTGSRLSVGTTLTRAQLLHLGLMSSENRAIHALARTYPGGMSAFVAAMNAKARSLG 211

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII------ 224
           M N+ +   +GL D   ++TA +   +             Y  IR+    N         
Sbjct: 212 MANSRFYEPTGL-DPRNVSTALELGKMVQAAS-------HYAKIRELTTSNYGQAYTSNG 263

Query: 225 -----TNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 N N L+   + NI   KTGY R +G ++V   +    P+V VV+G  TS  R  
Sbjct: 264 KLQQYKNTNVLVREGLMNITLQKTGYIREAGRSMVLQAKMGQTPVVIVVLGSATSASRAS 323

Query: 279 KALELIT 285
            A  L  
Sbjct: 324 DARSLGN 330


>gi|288576057|ref|ZP_05978110.2| penicillin-binding protein 7 [Neisseria mucosa ATCC 25996]
 gi|288566309|gb|EFC87869.1| penicillin-binding protein 7 [Neisseria mucosa ATCC 25996]
          Length = 313

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 60/259 (23%), Positives = 116/259 (44%), Gaps = 18/259 (6%)

Query: 45  ASELHAKP---KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHL 100
           A  + A P     ++++ +    ++   K  +   P AS++K+M+  I+ +     +L +
Sbjct: 62  AQAMMAGPLLTSQAALIFNNKTGEILYQKNADRVMPIASISKLMSAMIVLDA----RLDM 117

Query: 101 NTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           N  I ++     +   +   L   T  T  + +   +  S N  + A G    G    F 
Sbjct: 118 NEPITITADEIDRLKGTGSRLAIGTTLTRGELLHLSLMSSENRATHALGRTYPGGMSAFV 177

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK-----YFSI 214
             M+ KA+ +GM ++ +   +GL+ +N ++TA D   +     K +P   K     Y S+
Sbjct: 178 AAMNAKAQSLGMYSSRFYEPTGLNFQN-VSTANDLNRMVAAASK-YPLINKNSTSNYGSV 235

Query: 215 RKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                R +   N N L+     NI+  KTGY R +G ++V     ++ PI  V++  PTS
Sbjct: 236 WTANGR-QNYKNSNALVREGSWNIELQKTGYIREAGRSMVVKANVQNQPITIVLLNSPTS 294

Query: 274 QERDQKALELITSFLEKKT 292
             R   A ++ +  L++++
Sbjct: 295 TTRVNDARKIESWMLQRRS 313


>gi|313114789|ref|ZP_07800289.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622844|gb|EFQ06299.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 451

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 117/290 (40%), Gaps = 24/290 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY--SSIVIDVNKNQMTGFKQ-DEPRYPASL 80
           +++    +  +L +  + +  A+          +  +ID +   +   +  +E  +PAS+
Sbjct: 6   MKKLTAALCVVLLMICVFVPGAAAAGPALGATRAYCIIDADTGLVLAQQNMNEELHPASI 65

Query: 81  TKMMTLYIIFEYLQSKKLHLNT-QIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILAL 135
           TK+MTL +  E     + + +  ++ V+       A  + S + L+E         + A 
Sbjct: 66  TKVMTLGLACE---KAQGNWDDIKLTVTHEDVYSLAGTDSSHIALREGEEVPLTDALYAT 122

Query: 136 ITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +  SAND +    E++  G+       M+ + +++G+ +T + N  G+ D++  T+  D 
Sbjct: 123 MMASANDGANLLAEYVGEGTIADGVAKMNARVEELGLAHTHFANPHGISDEDHYTSCYDM 182

Query: 195 AILGILLRKN--FPQYYKYFSIRKFRYRN-----RIITNHNKLL---NKMH--NIDGIKT 242
           A +     +   F Q +    +   +  N     R  +  +K+    ++ +  +I G K 
Sbjct: 183 AQILRWALEQPGFEQVFTRNEMYTMQPTNIQPVTRYFSQQDKMRIGSSRYYISSILGSKL 242

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           GYT  + ++           ++ V M    S ++      L+       T
Sbjct: 243 GYTNTARYSYACLAEQNGVRLICVTMQSELSTDKYNDMRTLLDYAFSTFT 292


>gi|331701010|ref|YP_004397969.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus buchneri
           NRRL B-30929]
 gi|329128353|gb|AEB72906.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus buchneri
           NRRL B-30929]
          Length = 396

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 64/279 (22%), Positives = 126/279 (45%), Gaps = 34/279 (12%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           +  S    K   S++ +DVN N  +     +  R  ASL+K+MTLY++ + +   K   +
Sbjct: 118 AGTSPFGLKYAKSAVALDVNTNNNVWTKNANTARPIASLSKLMTLYLVRQKISQGKGTWS 177

Query: 102 TQIPVSKTAATQ-NPSKLYLKEK---TYFTTEQGILALITRSANDVSTAFGEFISGS--- 154
           +++  S     +   S ++   K     +T  Q  LA +  S+N+ + A G++++G    
Sbjct: 178 SKVTTSNAGLKKLGKSNVFGGFKFNHNSYTVRQLYLAGLIESSNNAAIALGQWVAGGSTP 237

Query: 155 --EKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------------QITTARDQAILG 198
              KKF  +M+N+AK+ G++++ + +ASG+   +                 +A D A + 
Sbjct: 238 DYNKKFIGMMNNQAKEWGLKHSSFVSASGMEQNSLAPYGYSIGASKNANYVSASDIAQIS 297

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL--NKMH----NIDGIKTGYTRNSGFNI 252
                ++       S++  +   + + N+N LL   K +    N+DG+KTGYT  +G+  
Sbjct: 298 RHFVVDYNDILTDASVKSMKVDGQTLHNYNNLLPGRKYYQKSLNVDGLKTGYTDPAGYCF 357

Query: 253 VTSLRYKDD-PIVAVVMGMPTSQERDQKALELITSFLEK 290
           V + R      I+ VV+     +    +   L+     +
Sbjct: 358 VGTGRKSGHDRIITVVL---HDENEFTETRSLMNYVYNQ 393


>gi|291563266|emb|CBL42082.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
           SS3/4]
          Length = 322

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 26/232 (11%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQNPSKL-YLKEKTYFTTEQ 130
           E R PAS TK+MT  I  +Y      +L+  + V + +  T++ S +  +      T EQ
Sbjct: 94  ERRNPASTTKVMTALIALKYG-----NLDDVVTVPQESVITESGSSMAGVVPGDKLTLEQ 148

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  L+  S ND + A    + GS + F  +M+ +A +IG   T + NA+GL + +   T
Sbjct: 149 LLYGLLIPSGNDAANAIAVHMGGSIEGFVKMMNEEAVQIGATGTHFANANGLTNADHYMT 208

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFR--YRN---------RIITNHNKLLNKMHNIDG 239
           A D  ++     K + ++      + +   Y+            ++N+  +L K    DG
Sbjct: 209 AYDLYLMFHEALK-YEKFRDIIGTKTYTASYKGADGSDKTASWSVSNY-YMLGKREMPDG 266

Query: 240 I-----KTGYTRNSGFNIVTS-LRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           +     KTG T+ +G+ ++            +VVM   +          +I 
Sbjct: 267 LSVFGGKTGTTQAAGYCLIMGETDAGGKEYASVVMHADSRDALYSDMSTIIE 318


>gi|71736880|ref|YP_274768.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557433|gb|AAZ36644.1| penicillin-binding protein 7 [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 311

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 104/245 (42%), Gaps = 21/245 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++VID+  +++      +   P AS+TK+MT  ++ +     K  ++  IPV+    +Q
Sbjct: 44  SAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVVLDA----KQSMDEVIPVN---ISQ 96

Query: 114 NPSKLYL----KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +    K  +       +L  +  S N  + +      G    F + M+ KAK +
Sbjct: 97  TPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 156

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI--RKFRYRNRIIT-- 225
           GM++T Y   +GL   N ++TARD   L +  RK +P   +  +   +   +R    T  
Sbjct: 157 GMKHTAYVEPTGLSVYN-VSTARDLTKLVMAARK-YPMLSELSTTEQKTVTFRKPTYTLG 214

Query: 226 --NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
             N + LL K   +I   KTG+T  +G  +V      + P+  V++           A  
Sbjct: 215 FSNTDHLLRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYTHFADASR 274

Query: 283 LITSF 287
           +    
Sbjct: 275 IRKWM 279


>gi|226942291|ref|YP_002797364.1| penicillin-binding protein 7 [Azotobacter vinelandii DJ]
 gi|226717218|gb|ACO76389.1| penicillin-binding protein 7 precursor [Azotobacter vinelandii DJ]
          Length = 318

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 119/307 (38%), Gaps = 34/307 (11%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK------------PKYSSIVIDVNKNQMTGFKQ 71
           ++ +   +  +L  + +++    +   K               S++VID+N  +      
Sbjct: 1   MKTHPSFLALLLACACVVVMPGVQAVDKVPPVRTPPPLELASASALVIDLNTGRELFANH 60

Query: 72  DEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTE 129
            +   P AS++K+MT  +  +  Q     L+  IPV      +       ++  +  +  
Sbjct: 61  PDVIVPIASISKLMTAMVTLDARQP----LDEAIPVRIHDTRELRGVYSRVRVNSLISRR 116

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           + +   +  S N  + +      G   +F   M+ KA+ + M +T +   +GL ++N ++
Sbjct: 117 EMLRLALMSSENRAAASLAHNYPGGHARFVAAMNAKARALSMHSTRFVEPTGLSERN-VS 175

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRII--TNHNKLL-NKMHNIDGIKT 242
           TARD A L    R+ +P   +  +       F+    +    N N L+ N    I+  KT
Sbjct: 176 TARDLAKLLRAARQ-YPLIRELSTTPSHSAYFQQPRYVQNFNNTNPLVRNPDWRIEVTKT 234

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT-------LKH 295
           G+   +G  +      ++ P+  V++           A  +       K+       L+H
Sbjct: 235 GFIDEAGHCLALLAVIQNRPVAMVLLNTLGKHSHVGDANRVRQWLETGKSTPVPLMALRH 294

Query: 296 QQTHRKD 302
           +Q  + +
Sbjct: 295 KQRKQLE 301


>gi|270262024|ref|ZP_06190296.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Serratia
           odorifera 4Rx13]
 gi|270043900|gb|EFA16992.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Serratia
           odorifera 4Rx13]
          Length = 277

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 59/273 (21%), Positives = 114/273 (41%), Gaps = 17/273 (6%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLT 81
           +  R  + +  +  L +I  + A+        + +V++    +    KQ +   P ASLT
Sbjct: 10  FSLRRFRAVIALSLLFVIAPAQAAAPLVLHSKAVLVVNQRTGKTLFQKQADRVLPIASLT 69

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITR 138
           K+MT  +  +     +  L  ++ V+  AA ++    +   L   +  +    +   +  
Sbjct: 70  KLMTAMVALDS----RRPLGNKMRVT--AADRDLLKKTHSRLTLGSSLSRRDMLHIALMS 123

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S N  + A      G  K F   M+ KA+ IGM++  + +++GL     + +A D   + 
Sbjct: 124 SENRAAAALSRNYPGGRKAFVAKMNRKARSIGMKHARFYDSTGLT-PRNVASANDLLKMV 182

Query: 199 ILLRKNFPQYYKYFSIRK-FRYRNR---IITNHNKLL-NKMHNIDGIKTGYTRNSGFNIV 253
               + +    ++ + R+   Y  R   +  + N L+ N+  NI   KTGYT  +G  +V
Sbjct: 183 NHAYR-YQTIRRFSTDRQHVVYPGRGQLVYRSSNGLINNRNWNIQLQKTGYTNEAGHCLV 241

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
                K  P+V +++G          AL L T 
Sbjct: 242 MRTLIKGQPVVIILLGSQQRYGHYDDALRLKTW 274


>gi|1586531|prf||2204232B penicillin-binding protein 4
          Length = 434

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 56/263 (21%), Positives = 102/263 (38%), Gaps = 29/263 (11%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  D    PAS+TK+MT+Y+  E +   +L L+  + ++            S
Sbjct: 57  QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T    +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT +
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176

Query: 177 KNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G                 +  ++TARD AIL + + K  P+   +           
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQEATVSTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------ 272
                N  L      +   DG+KTG +  + +N   + +     I  V+MG         
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296

Query: 273 SQERDQKALELITSFLEKKTLKH 295
            ++R+     L+    ++     
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVK 319


>gi|313200023|ref|YP_004038681.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Methylovorus
           sp. MP688]
 gi|312439339|gb|ADQ83445.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylovorus
           sp. MP688]
          Length = 330

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 96/240 (40%), Gaps = 15/240 (6%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ- 113
           +++++    ++   K  D+    AS+TK+MT  ++ +      L ++  + +++      
Sbjct: 86  ALIVNQETGEVLYAKSVDQATPIASVTKLMTAMVMLDAH----LPMDELLTINEADVDTL 141

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +   L+  T  T  + +   +  S N  ++A G    G    F   M+ KA  +GM +
Sbjct: 142 KGTSSRLRLGTTLTRAEMLHLALMSSENRAASALGRNYPGGLTAFIRAMNAKASMLGMAH 201

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY------RNRIITNH 227
           + + + +GL+  N I+TA D   +     + +P+  +  +                  N 
Sbjct: 202 SQFVDPTGLNSAN-ISTAEDLVKMVRAAYQ-YPEIRQVSTSASQEVPVYGLRNPINFVNT 259

Query: 228 NKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           N L+     + G+ KTG+   +G  +V        P++ V++       R   A  +   
Sbjct: 260 NVLVRNSDWVIGLSKTGFINEAGRCLVMQAEIAGQPMIIVLLDSYGKYSRIGDAQRIRKW 319


>gi|262201714|ref|YP_003272922.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Gordonia
           bronchialis DSM 43247]
 gi|262085061|gb|ACY21029.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Gordonia
           bronchialis DSM 43247]
          Length = 411

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 96/250 (38%), Gaps = 25/250 (10%)

Query: 37  LSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
             +I    A  +  +    + ++ DV+   +   K    RY PAS  K++   +      
Sbjct: 74  CGVIADPSAGPIPQRLTSAAWLIADVDSGHVIAAKDPHGRYRPASTIKVLLALVALR--- 130

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
              LHL+  +  +    +       +    ++TT   +  L+  S ND + A    + G+
Sbjct: 131 --DLHLDDVVEPTVEDWSTEGDSCGMGPGGHYTTRDLLTGLLMVSGNDCANALSRSLGGT 188

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           E   A + +  A  +G  +T   + SGL      T+  D A+      ++   + +   +
Sbjct: 189 EATLAKM-NELAASLGAHDTRAASPSGLDAAGMSTSPYDMALFFRAALRD-NTFRELIGL 246

Query: 215 RKFRYRNR----------------IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
           R FR+ +                 + T+++ LL     + G KTGYT ++    V ++  
Sbjct: 247 RTFRFPDYPPRADVPGDKPHPAYDMYTSNHLLLEDYPGMIGGKTGYTDDALKTFVGAVHR 306

Query: 259 KDDPIVAVVM 268
               I+ V M
Sbjct: 307 DGRTIMVVQM 316


>gi|325681439|ref|ZP_08160965.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus albus 8]
 gi|324106929|gb|EGC01219.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus albus 8]
          Length = 387

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 62/325 (19%), Positives = 137/325 (42%), Gaps = 14/325 (4%)

Query: 22  IYIQRNIQLMGKILFL---------SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD 72
           + I++ + +M   L +             + +   L + P    I ++ +  ++   K  
Sbjct: 1   MEIRKKLTIMFICLTVLCGLLPDRVCAETVPVEDLLASMPADEIIAVECSTGKVLMEKNS 60

Query: 73  EPRYPAS-LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +     S L K+M + +  E +++ +L L+  +  S  A +Q   +++L +    T ++ 
Sbjct: 61  DITAEVSHLAKLMLVLLTAEKIENGELSLDDVVTASANANSQPAPQIWLDKNEKITVDEL 120

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + ++   +AND + A  E I G+ +     M+ KA+ + M++T Y +  G+ D++ ++ A
Sbjct: 121 LKSITVSNANDGAVALAEHIFGTSESAVAEMNRKAELLDMRSTTYADVCGI-DEHTLSDA 179

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKF-RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
            D A+L   L K+      + S  ++ R     + N N+ +     I G+K   T  +G 
Sbjct: 180 ADTAVLASELVKHEMLIPYFTSWLEYVRDGKAELVNLNRPVRSYKGITGMKACSTSAAGE 239

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLK 310
             V + +     I  V++G    +  D  + +L+    E  +L   +    + L    + 
Sbjct: 240 CAVVTAQRSGMDIAVVIIGGDKRENVDDMSKKLLDMCFESYSLYSPEPTA-EMLKKIPVN 298

Query: 311 KSLMIKKLKRTYSQFKKIDAKAHST 335
                KK+  T+ +         S+
Sbjct: 299 GGEQ-KKVAVTFGELPDAVIPKGSS 322


>gi|325263833|ref|ZP_08130566.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
 gi|324030871|gb|EGB92153.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
          Length = 425

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 126/300 (42%), Gaps = 40/300 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +P  S I++++N   +   +  +    PAS++K+MT+ + ++ +Q  +  L+TQ+PV+  
Sbjct: 24  QPAGS-IIVEINTGHVLWQENPQISWEPASMSKLMTILLAYDAIQEGEFSLDTQVPVTDK 82

Query: 110 ----AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
               A   + S   +     +T  + I  +I  S+   +    + I     KF  L++ +
Sbjct: 83  YLDIAGRYSLSNNKMLAGASYTVAELIDLIIVPSSAAATYMLADLIEPDPDKFVTLLNER 142

Query: 166 AKKIGMQNTIYKNASGLHDK--------------NQITTARDQAILGILLRKNFPQYYKY 211
           A  +GM+NT Y N  G+ ++                +TT  D A+L     K +P    +
Sbjct: 143 ASSLGMKNTRYYNPVGVPNELLVPYQPVNASLTDVNVTTPEDYALLCCYFVKTYPDILNH 202

Query: 212 FS-----IRKFRYRNRIITNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
                  I++          +   L      +   DG+KTG +  +GFN  ++    +  
Sbjct: 203 TKHPKIVIKEGTPYEEKFDTYQYSLEGAKYSLKGTDGLKTG-SNQNGFNYSSTALRGNTR 261

Query: 263 IVAVVMGMPTSQERD-QKALELI--------TSFLEKKTLKHQQTHRKDNLSSTSLKKSL 313
           +V +VMG+   +++  ++   LI            E + +  +  H  +N     +KK L
Sbjct: 262 LVEIVMGVSKWEDQAGEEMRHLIGNAIMEQAFQNFEYRKVLEKGIHTINN-KKIEVKKDL 320


>gi|282866806|ref|ZP_06275843.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           sp. ACTE]
 gi|282558352|gb|EFB63917.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           sp. ACTE]
          Length = 320

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 105/273 (38%), Gaps = 34/273 (12%)

Query: 43  SMASELHAKPKYS---SIVIDVNKNQ-----MTGFKQDEPRYPASLTKMMTLYIIFEYLQ 94
           + A+   A P  +   + ++D            G K DE    AS TK+MT  ++ ++ +
Sbjct: 53  APATGDQATPDVAIENAFLLDARDGSQERPMWAGTKADESVSMASTTKIMTALVVLQHPE 112

Query: 95  SKKLHLNTQIPVSK----TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
                L+ QI V +           S   L+     T  Q + A++  S  D + A  + 
Sbjct: 113 W----LDRQITVKQEYRDYVTANGASTADLQTGDKLTARQLLHAMLIPSGGDAAMALADS 168

Query: 151 ISGSE------KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
               +        F   M+  A+++G+  T + +  G+   +  +TARD A LG      
Sbjct: 169 FGNGDTQEARIADFQDQMNTHAQQLGLTGTHFDSFDGISHGDNRSTARDLAKLGQRAMLK 228

Query: 205 FPQYYKYFSIRKF---------RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
            P +     + ++         R R       N LL+      G+KTG    +G+++V +
Sbjct: 229 -PVFADIVKLEQYETEAPAANGRTRYYTWNTTNDLLSTYDGALGVKTGSGSEAGYSLVFA 287

Query: 256 LRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
               +  +V  ++G    QE    A +++    
Sbjct: 288 AERDNRTLVGAIVGA--DQEVFADAAKMLDWGF 318


>gi|21225333|ref|NP_631112.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces coelicolor A3(2)]
 gi|9716157|emb|CAC01548.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           coelicolor A3(2)]
          Length = 413

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 89/261 (34%), Gaps = 18/261 (6%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLN 101
             A  +      S +V D     +           PAS  K +    +   L     H  
Sbjct: 85  PAAPRVPEVSALSWVVADAGTGDVLAANDAHRELPPASTLKTLFALTVLPALPGGIRH-- 142

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
              P   +      S + + E   +        +   S ND        ++G     A  
Sbjct: 143 EVGPEDLSGIGPGSSLVGVVEGQTYRVSDLWNGVFLNSGNDAVHVLAS-LTGGWSATAAR 201

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           M  +A+ +G ++T  ++  G     Q+++A D A+ G    +  P + +Y +     +  
Sbjct: 202 MQAEARALGARDTHVRSPDGYDAPGQVSSAYDLAVFGREGLRR-PDFARYCAKVDAMFPG 260

Query: 222 R-----IITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG- 269
           R      I N N+LL           + G+K GYT N+G  ++ + R     +V  VM  
Sbjct: 261 RDGSSYGIMNTNRLLTGADGVQPYPGLIGVKNGYTSNAGNTLIAAARRDGRTLVVTVMNP 320

Query: 270 -MPTSQERDQKALELITSFLE 289
                    ++A  L+    E
Sbjct: 321 QEGGGHAVYEEARALLDWGFE 341


>gi|306821313|ref|ZP_07454923.1| possible beta-lactamase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550654|gb|EFM38635.1| possible beta-lactamase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 383

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 65/283 (22%), Positives = 125/283 (44%), Gaps = 13/283 (4%)

Query: 54  YSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT--A 110
            S  ++D +   +   K  D  R  AS+TK++ + +I + +++  L +N ++ +S+   A
Sbjct: 19  VSGAIMDYDSGAVLWSKNGDSKRTIASMTKVLAVAVILDEIKAGNLSMNDKVAISEYASA 78

Query: 111 ATQNPSKLY---LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
            + +P+       +    +T +  +   +  S+N    A GE ISGS   FAI M+  A 
Sbjct: 79  ISHDPAWAAYECFQVGETYTVKTLLTNAVVSSSNASIIAIGEHISGSTANFAIKMNTLAA 138

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP-QYYKYFSIRKFRYRNRIITN 226
           KIGM+   +   SG+ D+  +TTA+    LG  +  N   +  K   +++   +      
Sbjct: 139 KIGMEG-NFTEPSGI-DEANVTTAKSMLKLGKYMYDNHEKEIKKMTMLKEVYIKGISKEA 196

Query: 227 HNK-LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            NK LLN  + I+G+KTG       N +   +  +  ++AV M   +   R    +++  
Sbjct: 197 TNKLLLNDYYGIEGLKTGAYSLDNANFIGVAKRGNKRLIAVTMHTTSDN-RFTDTIKMFE 255

Query: 286 SFLEKKTLKHQQTHRK--DNLSSTSLKKSLMIKKLKRTYSQFK 326
              +    K+ +  ++  +   S+  K        K T S  +
Sbjct: 256 FGWKNDFNKYWKNDKRLTETQISSDNKNPKNGDTFKVTLSNDQ 298


>gi|260663920|ref|ZP_05864773.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus jensenii
           SJ-7A-US]
 gi|260561806|gb|EEX27775.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus jensenii
           SJ-7A-US]
          Length = 397

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 71/341 (20%), Positives = 141/341 (41%), Gaps = 40/341 (11%)

Query: 27  NIQLMGKILFLSIIMISMA------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PAS 79
            + L G ++   I +I+++      +++ +    ++ ++D    Q+   +    +Y  AS
Sbjct: 9   KLGLAGIVVLWIIGIINLSFFNIVKADVQSVNAKAAFMMDEKTGQILYQRNATKKYAVAS 68

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN----PSKLYLKEKTYFTTEQGILAL 135
           LTK++TL +I E +   KL  + +I +SK  A        S + L     +T    I ++
Sbjct: 69  LTKILTLAVIMEDIHKHKLDWDQEIQISKDVAKVADDWHFSNVPLVYNERYTVRSLIESM 128

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------------- 182
           +  SA+  + A     +GS   F   M   AK+ G++N    N  GL             
Sbjct: 129 MIVSADGSTEALALADAGSVAAFNYKMKVVAKRAGVKNPEIYNMIGLSNGELGDLKLPKI 188

Query: 183 -HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLLNKMHN 236
             ++    +A+D A++   L   +P+       +   +         + N   +L  M  
Sbjct: 189 DDNQENQFSAKDMALVSKYLIDKYPEVLNITKTKYANFKIRQDNEMKMENIIYMLEGMGY 248

Query: 237 ------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS-QERDQKALELITSFLE 289
                 +DG+KTG T  +G+  V +  + +  ++ VV+ +P     +  +   +I +  +
Sbjct: 249 GPKKGTMDGLKTGKTDAAGYCYVGTGTFDNRRVITVVLDVPGEYSNQFIQTNNMIDTVFD 308

Query: 290 KKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
           K  L       K+NL     K ++  KK K+  S   + D+
Sbjct: 309 KYQLVK---VDKNNLPKKYQKITITSKKQKKKISVVPEKDS 346


>gi|118348894|ref|XP_001007920.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila]
 gi|89289687|gb|EAR87675.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila SB210]
          Length = 328

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 61/276 (22%), Positives = 109/276 (39%), Gaps = 52/276 (18%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT-QIPVSKTAATQNPSKLYLKEKT 124
           + G  Q+     ASLTKMMT  ++  + +  ++ ++  Q  VS+ A+    +   LK   
Sbjct: 30  ICGANQNMQLQIASLTKMMTYIVVLRFCKKHQIDIDNLQFVVSRNASAILGTSSGLKVGD 89

Query: 125 YFTTEQGILALITRSANDVSTAFGEFI--------------------------------- 151
             +    +  L+  S ND +    E I                                 
Sbjct: 90  QISIRDLLFCLMLPSGNDAALCLAENIGSLLYKMQKGLVKSAYVIRNLNILNIQNESTAI 149

Query: 152 -SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
            S S   F   M+N A+++G+  T + N  GLHDK  +++A+D AIL   + K      +
Sbjct: 150 QSCSVMSFVNEMNNMAQELGLNETKFSNPHGLHDKVNVSSAKDMAILTREIMKEDKFTLQ 209

Query: 211 YFSIRKFRY----------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
               + +++          R   + N NKLL K     G+KTGYT ++G  + +  +  D
Sbjct: 210 LCQAKSYQFEVKNQIDNTCRQINLVNTNKLLEK-PGYFGMKTGYTNSAGGCLASLFKQYD 268

Query: 261 D------PIVAVVMGMPTSQERDQKALELITSFLEK 290
                   ++ VV+   + + R      L+  +  +
Sbjct: 269 KIMAQTVEVIIVVLKSDSMENRFVDTQLLVEWYFRQ 304


>gi|254390349|ref|ZP_05005566.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
 gi|294813829|ref|ZP_06772472.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
 gi|197704053|gb|EDY49865.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
 gi|294326428|gb|EFG08071.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
          Length = 315

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 114/304 (37%), Gaps = 30/304 (9%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMA-SELHAKPKYSSI---VIDVNKNQMTGFK 70
           LT  + S+     + L G +L  +  + + A +     PK S     ++D+   +    K
Sbjct: 4   LTLTHTSVRRTATVVLAGGLLLTASPLTAPAHAATRPAPKISGAAGYLMDLKTGKSVFSK 63

Query: 71  QD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEKTY 125
            D   R  AS TK+ T   +     +K L LN ++ V +      A +  S   LK    
Sbjct: 64  SDSTRRQMASTTKVATAITVL---TTKGLDLNRKLTVKQSYRDYVAREKGSTADLKTGDK 120

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSE------KKFAILMSNKAKKIGMQNTIYKNA 179
            T  Q + AL+  S  D + A  +            K F  +M+ KA  + ++NT + + 
Sbjct: 121 LTVRQLLHALMLPSGCDAAYALADAFGKGTTTAARTKSFIGMMNKKAADLKLKNTKFDSF 180

Query: 180 SGLHDKNQ-ITTARDQAILGILLRKN--------FPQYYKYFSIRKFRYRNRIITNHNKL 230
            G+    Q  TT  D   L      N           Y+   +    + R    TN N L
Sbjct: 181 DGISPGGQNYTTPSDLTKLAKHAFSNQLFRDVVKTRTYHATATAANGKKRYYTWTNTNTL 240

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           L     + GIKTG    +G  +V +        + VV+  P   +R + A +++      
Sbjct: 241 LGSYQGMVGIKTGSGSKAGKCLVFAATRGSKTYIGVVLNGP---DRFRDAEKMLNHAFGT 297

Query: 291 KTLK 294
              K
Sbjct: 298 TGAK 301


>gi|256852167|ref|ZP_05557553.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus jensenii
           27-2-CHN]
 gi|260661800|ref|ZP_05862711.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus jensenii
           115-3-CHN]
 gi|282933532|ref|ZP_06338903.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
           208-1]
 gi|297205668|ref|ZP_06923064.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus jensenii
           JV-V16]
 gi|256615213|gb|EEU20404.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus jensenii
           27-2-CHN]
 gi|260547547|gb|EEX23526.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus jensenii
           115-3-CHN]
 gi|281302346|gb|EFA94577.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
           208-1]
 gi|297150246|gb|EFH30543.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus jensenii
           JV-V16]
          Length = 422

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 54/292 (18%), Positives = 115/292 (39%), Gaps = 34/292 (11%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT- 112
           ++I ID    ++   K   +    AS++K++T+Y+  + ++  KL  N ++  +K     
Sbjct: 47  AAITIDKKTGEVLYAKNAAQALPIASMSKLITIYLTLQAIKDGKLSWNQKLTPTKNIVKL 106

Query: 113 ---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
               + S + L+EK  +T +Q   A +  SAN       + + GS++     M    KK 
Sbjct: 107 SNNSDYSNVPLQEKHQYTVKQLYEASLIESANGAVMMLAQAVYGSQENAVNQMRTLLKKW 166

Query: 170 GMQNTIYKNASGLHDK--------------NQITTARDQAILGILLRKNFPQYYKYFSIR 215
            + +       GL +                    A   A +   L  ++P+      + 
Sbjct: 167 NITDAQIYTTCGLKNGEVGSDAYPGAGKNVENEIPAVGVAKIVDHLLTDYPEILNTSKLA 226

Query: 216 KFRYRN----RIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           +  +++      + N N +L  +      + +DG+KTG +  +G     +L+YK   ++ 
Sbjct: 227 ELDFKDGSTVTKMQNWNWMLKGLSQYDSAYPLDGLKTGTSEKAGACFAGTLKYKGRRLIT 286

Query: 266 VVMGMP----TSQERDQKALELITSFLEKKTLK-HQQTHRKDNLSSTSLKKS 312
           +VMG      T   R  +  +++        L  +++  +  NL    +   
Sbjct: 287 IVMGAKHADGTDPSRFTQTKKMLDYVYNNYQLYIYKKGTQLTNLKGIKVNDG 338


>gi|56477732|ref|YP_159321.1| D-alanyl-D-alanine carboxypeptidase [Aromatoleum aromaticum EbN1]
 gi|56313775|emb|CAI08420.1| probable D-alanyl-D-alanine carboxypeptidase [Aromatoleum
           aromaticum EbN1]
          Length = 263

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 103/239 (43%), Gaps = 13/239 (5%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           + +V++    ++   K+ +   P AS+TK+MT  ++ +  Q     L+ +I +++     
Sbjct: 13  AFVVVNQATGEVILEKKSDSVLPIASITKLMTAMVVLDGGQ----SLSEEIVITEDDLDT 68

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              +   L   T  T EQ +   +  S N  ++A G    G    F   M+ KA+ +G+ 
Sbjct: 69  IKGTGSRLALGTRLTREQLLHLALMSSENRAASALGRSYPGGIAAFVKAMNVKARLVGLG 128

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIIT--NHN 228
           +T + +++GL D   +++ RD   +       +P   ++   S      R R+    N N
Sbjct: 129 DTRFSDSTGL-DPTNVSSPRDLVRMVSAAS-TYPLIRRFSTSSEDHVEIRGRMHRFGNTN 186

Query: 229 KLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            L+      ID  KTGY R +G  +V   R  +  ++ V+M       R   A+ +   
Sbjct: 187 SLVRSPEWEIDVSKTGYIREAGRCLVMQARLLNQRVIIVLMDSEGRYTRTADAVRIKKW 245


>gi|167562012|ref|ZP_02354928.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           oklahomensis EO147]
          Length = 379

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 98/238 (41%), Gaps = 17/238 (7%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-- 114
           V+D     +   K      P AS+TK+MT  +  +     +  L+  + VS         
Sbjct: 144 VVDERTGTVLIEKNANRVVPIASVTKLMTSMVALDA----RAPLSRPLRVSAQDRDYEKL 199

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+  LK  +  +    +   +  S N  + A     +G    F   M+ KA+ +GM++
Sbjct: 200 TGSR--LKVGSVLSRRDMLHIALMSSENRAAAALSRDYAGGRPAFVAAMNRKARTLGMKH 257

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-IRKFRYRNRII---TNHNK 229
           T + NA+GL     ++TA D + L     + +P+   + +   K  +  R      N + 
Sbjct: 258 THFVNATGLS-PRNVSTAHDLSRLVAAASR-YPRIKTFSTDTSKTVFPGRGQLRYVNSDA 315

Query: 230 LLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L+     NI   KTG+   +G  +V     +  P+  V++G P S +    A+++   
Sbjct: 316 LVRAGDSNIMLQKTGFINEAGHCVVFRYAVRGRPVDIVLLGAPGSSDHIADAMKIRRW 373


>gi|120403176|ref|YP_953005.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium vanbaalenii
           PYR-1]
 gi|119955994|gb|ABM12999.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium vanbaalenii
           PYR-1]
          Length = 294

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 114/293 (38%), Gaps = 38/293 (12%)

Query: 24  IQRNIQLMGKILFL-SIIMISMASELHAK--------------PKYSSIVIDVNKNQMTG 68
           + R +  +G +L L   + +  A+ + A               P  + IV D++   +  
Sbjct: 1   MTRLLACLGAVLCLVGSVSVPHAAAVPATGIVQPAGSMPIPDGPAQAWIVADMDTGAVLA 60

Query: 69  FKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
            + +   + PAS  K++   ++ +     +L L+  I  ++       +   +     +T
Sbjct: 61  ARDEHGHFAPASTIKVLLAMVVLD-----ELPLDATIVANEADTLVECNCAGVTPGRTYT 115

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-- 185
           T Q + AL+  S ND +      + G +    + M+ KA  +G   T   + SG+     
Sbjct: 116 TRQLLEALLLVSGNDAANTLATMLGGRDVA-VMKMNAKAATLGAYGTNAGSPSGIDGPGI 174

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKMHNIDGIK 241
           +  +T RD A++      + P + +  +     +     + ++ N ++LL++     G K
Sbjct: 175 DIWSTPRDLAVIFRAAMAD-PVFAQIVAQPTAVFPAKTGDVVLVNQDELLHRYPGTFGGK 233

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVM------GMPTSQERDQKALELITSFL 288
           TGYT  +    V         +V  +M      G PT  +   +A  L+    
Sbjct: 234 TGYTDLARKTFVGGAARNGRHLVVALMYGLVKEGGPTYWD---QAAALLDWGF 283


>gi|152999492|ref|YP_001365173.1| D-alanyl-D-alanine endopeptidase [Shewanella baltica OS185]
 gi|160874112|ref|YP_001553428.1| D-alanyl-D-alanine endopeptidase [Shewanella baltica OS195]
 gi|217972168|ref|YP_002356919.1| D-alanyl-D-alanine endopeptidase [Shewanella baltica OS223]
 gi|304410998|ref|ZP_07392614.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
           baltica OS183]
 gi|307301879|ref|ZP_07581637.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
           baltica BA175]
 gi|151364110|gb|ABS07110.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
           baltica OS185]
 gi|160859634|gb|ABX48168.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
           baltica OS195]
 gi|217497303|gb|ACK45496.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
           baltica OS223]
 gi|304350533|gb|EFM14935.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
           baltica OS183]
 gi|306913917|gb|EFN44338.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
           baltica BA175]
 gi|315266344|gb|ADT93197.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
           baltica OS678]
          Length = 321

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 103/257 (40%), Gaps = 19/257 (7%)

Query: 43  SMASELHAK----PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKK 97
           + A +  AK       S++V+D+  N++          P AS+TK+MT  +  +     K
Sbjct: 40  APAKKAPAKQQEVASSSAMVVDLKTNEVLYSSNPNAVVPIASVTKLMTAMVTLDA----K 95

Query: 98  LHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           L ++ ++ V+             ++  +  + +  +L  +  S N  + +      G  K
Sbjct: 96  LAMDEKLAVNINDTKEMRGVYSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGHK 155

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F   M+ KAK +GM+NT Y   +GL  KN +++A D  +L     + +P   +  S  K
Sbjct: 156 AFIKAMNAKAKALGMKNTRYVEPTGLSYKN-VSSASDLIVLLKA-SEGYPMLGQLSSTEK 213

Query: 217 FRYR------NRIITNHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
                     +    N N+L+ K   NI   KTG+T  +G  +V         +  VV+ 
Sbjct: 214 KTVTFAKPRYSLDFRNTNRLVYKDNWNIHLTKTGFTNEAGHCLVMRTEMAKRQVAFVVLD 273

Query: 270 MPTSQERDQKALELITS 286
                     A  L   
Sbjct: 274 AYGKYTHIADANRLRNW 290


>gi|227530146|ref|ZP_03960195.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus vaginalis
           ATCC 49540]
 gi|227349929|gb|EEJ40220.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus vaginalis
           ATCC 49540]
          Length = 415

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 69/312 (22%), Positives = 126/312 (40%), Gaps = 41/312 (13%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKP------KYSSIVIDVNKNQMTGFKQDEPRYP- 77
           +  I  +  IL ++++ +  A+   A          ++  ID    Q+   K     YP 
Sbjct: 6   RALIAFLVTILTVNVVSLGFANSASADTTKLNLNARAAYAIDAETGQVLYQKNANKTYPV 65

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGIL 133
           ASLTK++TL +I + +++  L  N ++ ++    K A   + S + L     +T  Q   
Sbjct: 66  ASLTKVLTLAVIEQDVKNHHLSWNQKVKITPAVAKVANDWHFSNVPLNAGESYTIRQLTE 125

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN------- 186
           +++  SA+  + A     +GS   F   M   AKK G+ +    N  GL + +       
Sbjct: 126 SMMIVSADGSAEALALADAGSTAAFNKKMQAVAKKAGVTDAKIYNMIGLANGDLGKNSLK 185

Query: 187 -------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NRIITNHNKLL--- 231
                     +A+D A++   L + +P   K    +   +R        + N N LL   
Sbjct: 186 GVKKTAENQFSAKDMALISKYLIETYPDSLKITKTKMANFRVSANQEYQMININSLLPEN 245

Query: 232 ---NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ-ERDQKALELITSF 287
               K   IDG+KTG T  +G  I+++  +    ++ V +        + + A +    F
Sbjct: 246 GFAPKNGTIDGLKTGNTDTAGKCIISTGTFAGRRVIVVALHTKGDWNAQSKDAQK----F 301

Query: 288 LEKKTLKHQQTH 299
            EK T  +Q   
Sbjct: 302 YEKLTEIYQPVQ 313


>gi|145588924|ref|YP_001155521.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047330|gb|ABP33957.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 342

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 102/239 (42%), Gaps = 15/239 (6%)

Query: 56  SIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQ 113
           ++V++ +  ++   K        AS+TK+MT  ++ +     KL LN  I +++      
Sbjct: 98  AMVVNQDTKEVYFEKNPSVSLPIASITKLMTAMVVLDS----KLPLNETIVINEQDVYIY 153

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+  L   T  + E  +   +  S N  +   G    G    F   M+ KAK++GM +
Sbjct: 154 KHSR--LAGGTALSREDALHLALMSSENRAAYTLGRNYPGGIPAFVDAMNRKAKELGMDH 211

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNK 229
           + + + +GL  +N +++A D   +     + +    ++ +          R +   N N+
Sbjct: 212 SHFADPTGLMSEN-VSSAEDLTRMLNAAYQ-YKLIREFSTWPDLTMVIANRPQKFLNTNR 269

Query: 230 LLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           L+       G+ KTG+   +G  +V   R  + P++ V +    +Q R   A+ +   +
Sbjct: 270 LVRSGDMDIGLQKTGFINAAGKCLVMQARVNNTPLLLVFLDSVGTQSRFADAVRVRDWY 328


>gi|126175583|ref|YP_001051732.1| D-alanyl-D-alanine endopeptidase [Shewanella baltica OS155]
 gi|125998788|gb|ABN62863.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Shewanella baltica OS155]
          Length = 321

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 103/257 (40%), Gaps = 19/257 (7%)

Query: 43  SMASELHAK----PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKK 97
           + A +  AK       S++V+D+  N++          P AS+TK+MT  +  +     K
Sbjct: 40  APAKKAPAKQQEVASSSAMVVDLKTNEVLYSSNPNAVVPIASVTKLMTAMVTLDA----K 95

Query: 98  LHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           L ++ ++ V+             ++  +  + +  +L  +  S N  + +      G  K
Sbjct: 96  LAMDEKLAVNINDTKEMRGVYSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGHK 155

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F   M+ KAK +GM+NT Y   +GL  KN +++A D  +L     + +P   +  S  K
Sbjct: 156 AFIKAMNAKAKALGMKNTRYVEPTGLSYKN-VSSASDLIVLLKA-SEGYPMLGQLSSTEK 213

Query: 217 FRYR------NRIITNHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
                     +    N N+L+ K   NI   KTG+T  +G  +V         +  VV+ 
Sbjct: 214 KTVTFAKPRYSLDFRNTNRLVYKDNWNIHLTKTGFTNEAGHCLVMRTEMAKRQVAFVVLD 273

Query: 270 MPTSQERDQKALELITS 286
                     A  L   
Sbjct: 274 AYGKYTHIADANRLRNW 290


>gi|253731263|ref|ZP_04865428.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253725004|gb|EES93733.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
          Length = 431

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 102/263 (38%), Gaps = 29/263 (11%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  D    PAS+TK+MT+Y+  E +   +L L+  + ++            S
Sbjct: 57  QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVRMTNKEYIMSTLPELS 116

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T    +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT +
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176

Query: 177 KNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G                 +  +TTARD AIL + + K  P+   +           
Sbjct: 177 VNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------ 272
                N  L      +   DG+KTG +  + +N   + +     I  V+MG         
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296

Query: 273 SQERDQKALELITSFLEKKTLKH 295
            ++R+     L+    ++     
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVK 319


>gi|148544752|ref|YP_001272122.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri DSM
           20016]
 gi|184154105|ref|YP_001842446.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus reuteri JCM
           1112]
 gi|227363878|ref|ZP_03847983.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
           MM2-3]
 gi|325683088|ref|ZP_08162604.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           reuteri MM4-1A]
 gi|148531786|gb|ABQ83785.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri DSM
           20016]
 gi|183225449|dbj|BAG25966.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus reuteri JCM
           1112]
 gi|227071105|gb|EEI09423.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
           MM2-3]
 gi|324977438|gb|EGC14389.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
           reuteri MM4-1A]
          Length = 414

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 67/286 (23%), Positives = 120/286 (41%), Gaps = 33/286 (11%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMT 85
           +I L G  +F  +   + A ++ A+  Y+   ID    Q+   K    RYP AS+ K++T
Sbjct: 19  SICLNGLGMFEKVHADTAAFQMDARAAYA---IDAESGQVLYQKNATKRYPIASVIKILT 75

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQN----PSKLYLKEKTYFTTEQGILALITRSAN 141
           L +I + +++  L  + +I ++   A        S + L     +T  Q + +++  SA+
Sbjct: 76  LGVILQDIRNHHLKWDQKIKITPAVAKMADDWHFSNVPLMNGEEYTVRQLVDSMMLVSAD 135

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQ 187
             + A     +GS   F   M   AKK G+ +    N  GL               D   
Sbjct: 136 GSTEALALADAGSTAAFNKKMMAFAKKAGVTDIKIYNMIGLPNGDLGKHKLKGVDKDAEN 195

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLL------NKMHN 236
           + +A+D A++   L +N+P+       +   +     +  ++TN N LL       K   
Sbjct: 196 LLSAKDVALISKYLVENYPETLDITKQKFANFDVTKDQQYLMTNVNALLPQNGFAPKDGE 255

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           IDG+KTG T  +G  IV++  +    I+ V +          K  +
Sbjct: 256 IDGLKTGNTDRAGKCIVSTGTFAGRRIILVALHTKGEWNDQSKMQQ 301


>gi|227544057|ref|ZP_03974106.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
           CF48-3A]
 gi|300908323|ref|ZP_07125788.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
           SD2112]
 gi|68160782|gb|AAY86837.1| lr0959 [Lactobacillus reuteri]
 gi|227185963|gb|EEI66034.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
           CF48-3A]
 gi|300894570|gb|EFK87927.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
           SD2112]
          Length = 414

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 67/286 (23%), Positives = 120/286 (41%), Gaps = 33/286 (11%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMT 85
           +I L G  +F  +   + A ++ A+  Y+   ID    Q+   K    RYP AS+ K++T
Sbjct: 19  SICLNGLGMFEKVHADTAAFQMDARAAYA---IDAESGQVLYQKNATKRYPIASVIKILT 75

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQN----PSKLYLKEKTYFTTEQGILALITRSAN 141
           L +I + +++  L  + +I ++   A        S + L     +T  Q + +++  SA+
Sbjct: 76  LGVILQDIRNHHLKWDQKIKITPAVAKMADDWHFSNVPLMNGEEYTVRQLVDSMMLVSAD 135

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQ 187
             + A     +GS   F   M   AKK G+ +    N  GL               D   
Sbjct: 136 GSTEALALADAGSTAAFNKKMMAFAKKAGVTDIKIYNMIGLPNGDLGKHKLKGVDKDAEN 195

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLL------NKMHN 236
           + +A+D A++   L +N+P+       +   +     +  ++TN N LL       K   
Sbjct: 196 LLSAKDVALISKYLVENYPETLDITKQKFANFDVTKDQQYLMTNVNALLPQNGFAPKDGE 255

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           IDG+KTG T  +G  IV++  +    I+ V +          K  +
Sbjct: 256 IDGLKTGNTDRAGKCIVSTGTFTGRRIILVALHTKGEWNDQSKMQQ 301


>gi|194467015|ref|ZP_03073002.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
           100-23]
 gi|194454051|gb|EDX42948.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
           100-23]
          Length = 417

 Score =  168 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 66/286 (23%), Positives = 119/286 (41%), Gaps = 33/286 (11%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMT 85
           +I L G  +F  +   + A ++ A+  Y+   ID    Q+   K    RYP AS+ K++T
Sbjct: 22  SICLNGLGMFAKVHADNAAFQMDARAAYA---IDAESGQVLYQKNATKRYPIASVIKILT 78

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQN----PSKLYLKEKTYFTTEQGILALITRSAN 141
           L +I + +++  L  + +I ++   A        S + L     +T  Q + +++  SA+
Sbjct: 79  LGVILQDIRNHHLKWDQKIKITPAVAKMADDWHFSNVPLVNGEEYTVRQLVDSMMLVSAD 138

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQ 187
             + A     +GS   F   M   AKK G+ +    N  GL               D   
Sbjct: 139 GSTEALALADAGSTAAFNKKMMAFAKKAGVTDIKIYNMIGLPNGDLGEHKLKGVDKDAEN 198

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLL------NKMHN 236
           + +A+D A++   L + +P+       +   +     +  ++TN N LL       K   
Sbjct: 199 LLSAKDVALISKYLVEQYPETLDITKQKFANFDVTKDQQYLMTNVNALLPQNGFAPKNGE 258

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           IDG+KTG T  +G  IV++  +    I+ V +          K  +
Sbjct: 259 IDGLKTGNTDRAGKCIVSTGTFAGRRIILVALHTKGEWNDQSKMQQ 304


>gi|223985343|ref|ZP_03635415.1| hypothetical protein HOLDEFILI_02721 [Holdemania filiformis DSM
           12042]
 gi|223962698|gb|EEF67138.1| hypothetical protein HOLDEFILI_02721 [Holdemania filiformis DSM
           12042]
          Length = 498

 Score =  168 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 98/237 (41%), Gaps = 24/237 (10%)

Query: 58  VIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----AT 112
           ++D++  Q+   K  E   YPAS+TKMMTL +  E   +    L++ + +        A 
Sbjct: 95  MVDMDTGQVMIDKGSEDQIYPASMTKMMTLLVAIENAPA----LDSTMTLGPEVFAGLAE 150

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
            + S    K+    + +  +  L   S  D + A     +GSE  F  LM+ KA ++GM 
Sbjct: 151 AHASVAGFKQGETVSVKDLLYGLFLPSGADAAQALALEEAGSETAFVGLMNEKAAELGMT 210

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR---------- 222
            T + N SGLHD +  TT RD   L     +N P + + F  R++               
Sbjct: 211 GTHFVNTSGLHDPDHYTTLRDLETLMRYALEN-PTFNEIFQTRRYTATPSLHTGGLVWES 269

Query: 223 ----IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
                I++ +       +I G KTGYT  +G  + +         + +    P S  
Sbjct: 270 TLFAKISSTDPAKIDNDSILGGKTGYTNPAGLCLASIAEKNGTRYMLITAHAPVSNT 326


>gi|71065270|ref|YP_263997.1| murein-DD-endopeptidase [Psychrobacter arcticus 273-4]
 gi|71038255|gb|AAZ18563.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Psychrobacter arcticus 273-4]
          Length = 363

 Score =  168 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 105/252 (41%), Gaps = 20/252 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKK--LHLNTQIPVSKTAA 111
           S  VID    +    K  +  R  AS+TK+MT  ++ +     +  L L+ +  V    A
Sbjct: 119 SVAVIDAETGESIYEKDADIARPMASITKVMTAMVVLDAGLDMREELTLDPEDFVGPKRA 178

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           + N     LK        + +L  + +S N  + +      G    F   M+ KA+++GM
Sbjct: 179 SSN-----LKSGDRLNRAEMLLMALMKSENPAAKSLARNYPGGYSAFMRAMNRKAQELGM 233

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-------RNRII 224
               + + +GL DK  I ++ D   +      N+    ++ + + + +        NR  
Sbjct: 234 STAFFGDPTGL-DKRNIASSNDLVKMVRAA-GNYDVIRRFSTTKSYDFFVSNYASGNRTY 291

Query: 225 --TNHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
              N + L+       GI KTG+   +G  +V   R  + P + V++G  +S  R   A 
Sbjct: 292 KANNTSSLVRDGSYPIGISKTGFINEAGRCVVMETRVNNRPAIIVILGANSSATRWGDAK 351

Query: 282 ELITSFLEKKTL 293
            ++ S   ++T+
Sbjct: 352 NILNSLATRRTV 363


>gi|1262137|emb|CAA62899.1| penicillin-binding protein 4 [Staphylococcus aureus]
          Length = 431

 Score =  168 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 102/263 (38%), Gaps = 29/263 (11%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  D    PAS+TK+MT+Y+  E +   +L L+  + ++            S
Sbjct: 57  QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T    +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT +
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176

Query: 177 KNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G                 +  +TTARD AIL + + K  P+   +           
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTLAV 236

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------ 272
                N  L      +   DG+KTG +  + +N   + +     I  V+MG         
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296

Query: 273 SQERDQKALELITSFLEKKTLKH 295
            ++R+     L+    ++     
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVK 319


>gi|302186370|ref|ZP_07263043.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. syringae
           642]
          Length = 311

 Score =  168 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 104/245 (42%), Gaps = 21/245 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++VID+  +++      +   P AS+TK+MT  ++ +  Q     ++  IPV+    +Q
Sbjct: 44  SAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVVLDAKQP----MDEVIPVN---ISQ 96

Query: 114 NPSKLYL----KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +    K  +       +L  +  S N  + +      G    F + M+ KAK +
Sbjct: 97  TPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 156

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI--RKFRYRNRIIT-- 225
           GM++T Y   +GL   N ++TARD   L +  RK +P   +  +   +   +R    T  
Sbjct: 157 GMKHTAYVEPTGLSVYN-VSTARDLTKLVMAARK-YPLLSELSTTEQKTVTFRKPTYTLG 214

Query: 226 --NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
             N + L+ K   +I   KTG+T  +G  +V      + P+  V++           A  
Sbjct: 215 FSNTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYTHFADASR 274

Query: 283 LITSF 287
           +    
Sbjct: 275 IRKWM 279


>gi|227515412|ref|ZP_03945461.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus fermentum
           ATCC 14931]
 gi|227086216|gb|EEI21528.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus fermentum
           ATCC 14931]
          Length = 417

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 61/277 (22%), Positives = 117/277 (42%), Gaps = 33/277 (11%)

Query: 30  LMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMT 85
           L+  + F +++  S  +  +A       ++I ID    Q+   K    RYP AS+ K+ T
Sbjct: 12  LLVVVTFTTVLATSAGAVANASSTVDARAAITIDAETGQVLYEKNATKRYPIASVIKIRT 71

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNP----SKLYLKEKTYFTTEQGILALITRSAN 141
           L +I + ++  KL  + +I +SK  A        S + L E   +T +  + +++  SA+
Sbjct: 72  LAVIEQDIEQGKLKWDQKIKISKEVAKVANDWRFSNVQLNEGESYTVKSLVESMMIVSAD 131

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------------Q 187
             + A     +GS   F   M   AK+ G+ +    N  GL + +               
Sbjct: 132 GSAEALALASAGSTAAFNQKMQAVAKEAGVTDAKIYNMIGLANGDLGEMRLKNVSKKAEN 191

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKLLNKM------HN 236
             +A+D A +   L + +P   +    +   +     +   + N N +L +         
Sbjct: 192 QLSAKDVAKIARYLVEKYPSVLEITKQKFVNFQVSDSQQYEMVNINSMLPQNAAASTHGE 251

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           +DG+KTG T +SG+  V +  +    ++ VV+ +P  
Sbjct: 252 VDGLKTGMTDSSGYCFVGTGTFNGRRLITVVLKVPGE 288


>gi|119897114|ref|YP_932327.1| D-alanyl-D-alanine carboxypeptidase [Azoarcus sp. BH72]
 gi|119669527|emb|CAL93440.1| D-alanyl-D-alanine carboxypeptidase [Azoarcus sp. BH72]
          Length = 280

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 105/262 (40%), Gaps = 22/262 (8%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-NP 115
           V +    ++   K      P AS+TK+MT  ++ +      L LN ++ +S         
Sbjct: 33  VANQATGEVLLEKNSSTVLPIASITKLMTAMVVLDAG----LGLNDELAISDADIDTLKG 88

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           +   L   T  T E+ +   +  S N  ++A      G E+ F   M+ KA+ +G  +T 
Sbjct: 89  TGSRLVLGTRLTREEMLRLALMSSENRAASALARHYPGGERAFVEAMNVKARLLGAWDTR 148

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY--FSIRKFRYRNRIIT--NHNKLL 231
           Y +++GL +   +++ RD A +       +P   ++   S R      R +   N N L+
Sbjct: 149 YYDSTGL-NPANVSSPRDLAKVVSAA-ATYPLIREFSTTSERFVDIGGRTLRFANTNSLV 206

Query: 232 NK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                 I   KTGY   +G  +V        P+V V+M       R   A         +
Sbjct: 207 RSPDWEIAVSKTGYISEAGRCLVMQAWMHHQPVVIVLMDSNGRYTRTADA---------Q 257

Query: 291 KTLKHQQTHRKDNLSSTSLKKS 312
           +  K   TH   ++++ + ++ 
Sbjct: 258 RVRKWIDTHAVPHVATAAARRD 279


>gi|70725304|ref|YP_252218.1| hypothetical protein SH0303 [Staphylococcus haemolyticus JCSC1435]
 gi|68446028|dbj|BAE03612.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 383

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 116/249 (46%), Gaps = 24/249 (9%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           S +  K + S +++  ++ Q+   ++ +    PAS++KMMTLY+ +E +++ KL LN ++
Sbjct: 39  SSISTKYQPSGVMLTTDQGQILYNYRGNNQVDPASMSKMMTLYLTYEAIENGKLKLNDKV 98

Query: 105 PVSKTAATQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
            ++   AT     N S + LK+   +T E+ I      S+N  +   GE +SG    F  
Sbjct: 99  KITNKYATMSNLPNLSSVSLKQGQTYTIEELIKQTTLASSNAAAMILGEKVSGDNNTFTN 158

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDK--NQI------------TTARDQAILGILLRKNFP 206
            M+ +AK   M NT + N +G  +   +Q             +TA+D  +L   L K +P
Sbjct: 159 KMNQQAKSFNMTNTNFVNPAGAQNSLLDQYAPSKFKKQDFPKSTAKDMNLLMQALIKKYP 218

Query: 207 QYYKYFSIRKFRYRNRIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           Q  +   + +   R     + N  L      +   DG+KTG T N G+NI  + +     
Sbjct: 219 QILQISKLTRDTQRGNTFKSTNLSLKGQPLYLPGTDGLKTG-TSNKGYNIALTNKQDQLR 277

Query: 263 IVAVVMGMP 271
           +   +M + 
Sbjct: 278 LNETIMNVK 286


>gi|161486731|ref|YP_235491.2| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. syringae
           B728a]
          Length = 313

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 104/245 (42%), Gaps = 21/245 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++VID+  +++      +   P AS+TK+MT  ++ +  Q     ++  IPV+    +Q
Sbjct: 46  SAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVVLDAKQP----MDEVIPVN---ISQ 98

Query: 114 NPSKLYL----KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +    K  +       +L  +  S N  + +      G    F + M+ KAK +
Sbjct: 99  TPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 158

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI--RKFRYRNRIIT-- 225
           GM++T Y   +GL   N ++TARD   L +  RK +P   +  +   +   +R    T  
Sbjct: 159 GMKHTAYVEPTGLSVYN-VSTARDLTKLVMAARK-YPLLSELSTTEQKTVTFRKPTYTLG 216

Query: 226 --NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
             N + L+ K   +I   KTG+T  +G  +V      + P+  V++           A  
Sbjct: 217 FSNTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYTHFADASR 276

Query: 283 LITSF 287
           +    
Sbjct: 277 IRKWM 281


>gi|118471560|ref|YP_886772.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str.
           MC2 155]
 gi|118172847|gb|ABK73743.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str.
           MC2 155]
          Length = 275

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 98/242 (40%), Gaps = 12/242 (4%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  + +V D++  ++   K     Y PAS  K +   ++ ++L+            + + 
Sbjct: 43  PAKAWLVADMDTGRVLASKDPYGSYAPASTIKPLLAMVVLDHLRPDNFA-----RANASH 97

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S + LK    +TT Q + AL+  S ND +    + + G        M+ KA  +G
Sbjct: 98  TKVECSCVGLKPGQPYTTRQLLDALLMVSGNDAANMLADMLGGPRVA-VAAMNRKAAAVG 156

Query: 171 MQNTIYKNASGLHDKN--QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
            +NT   + SGL       +TT  D A++      N+P   +       ++  + +T  N
Sbjct: 157 ARNTRAASPSGLDGPGWESLTTPHDLAVIFRAAL-NYPVIAQILRQTTAQFPGKTLTYQN 215

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +LL +     G KTGYT  +    V + +  +  +V V M      +   +A+ L     
Sbjct: 216 ELLTRYPGDIGGKTGYTNLARKTYVGAAQRGNRRLVVVQMYGTG--DLYDQAIRLFDYGF 273

Query: 289 EK 290
            +
Sbjct: 274 SQ 275


>gi|63256357|gb|AAY37453.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Pseudomonas
           syringae pv. syringae B728a]
 gi|330973126|gb|EGH73192.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 294

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 104/245 (42%), Gaps = 21/245 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++VID+  +++      +   P AS+TK+MT  ++ +  Q     ++  IPV+    +Q
Sbjct: 27  SAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVVLDAKQP----MDEVIPVN---ISQ 79

Query: 114 NPSKLYL----KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +    K  +       +L  +  S N  + +      G    F + M+ KAK +
Sbjct: 80  TPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 139

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI--RKFRYRNRIIT-- 225
           GM++T Y   +GL   N ++TARD   L +  RK +P   +  +   +   +R    T  
Sbjct: 140 GMKHTAYVEPTGLSVYN-VSTARDLTKLVMAARK-YPLLSELSTTEQKTVTFRKPTYTLG 197

Query: 226 --NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
             N + L+ K   +I   KTG+T  +G  +V      + P+  V++           A  
Sbjct: 198 FSNTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYTHFADASR 257

Query: 283 LITSF 287
           +    
Sbjct: 258 IRKWM 262


>gi|254557717|ref|YP_003064134.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           JDM1]
 gi|254046644|gb|ACT63437.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
           JDM1]
          Length = 444

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/361 (20%), Positives = 141/361 (39%), Gaps = 43/361 (11%)

Query: 5   KIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKN 64
           +     KK  +       +    + + G  L       + A+   +    ++I +D +  
Sbjct: 2   RFAGKLKKVMIALVAAVTFSTAGLGIAGADL------QAQAASTPSISAKAAIAVDASTG 55

Query: 65  QMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKLY 119
           Q+   K   +P   AS+TKM++ Y++ + +   KL  N +I VSK  A        + + 
Sbjct: 56  QILYDKNSSKPMAIASMTKMLSTYLVLKAIHEDKLSWNQKISVSKAVAKMSQNTEYANVP 115

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           L     ++  Q   A    SAN   TA G+ ++G+  KF  LM   AK  G+ +    NA
Sbjct: 116 LLSTKTYSVRQLYNATEIYSANAAITALGDAVAGTPHKFVSLMRKTAKSWGITDATIINA 175

Query: 180 SGLHDK---------------NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI- 223
           SGL +K                   +A+D A +   L  ++P+  K  SI    +     
Sbjct: 176 SGLTNKEVGSTIGYSNVAASAENEMSAQDVATVAQKLLSDYPEVLKTSSIAHAWFEKGTS 235

Query: 224 ----ITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVMGM-- 270
               + N N +L  +        +DG+KTG +  +G     +++    + I+ VVM    
Sbjct: 236 SATKMDNRNYMLKGLVKHYSALPVDGLKTGTSTKAGNAFTGTVKFSNGNRIITVVMHAGA 295

Query: 271 --PTSQERDQKALELITSFL-EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
              +  ER  +  E+++       T    +  + + + +  ++    +     + S   K
Sbjct: 296 ANDSGTERFTQTAEIMSYVYHNYTTTTINKNGKINGVKAVDVQDGKSLTSQLVSNSGATK 355

Query: 328 I 328
           I
Sbjct: 356 I 356


>gi|49185390|ref|YP_028642.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Sterne]
 gi|49179317|gb|AAT54693.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Sterne]
          Length = 272

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 103/229 (44%), Gaps = 12/229 (5%)

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT YI+ E L    + L+  + +S        S + +  K   T    + AL+    N  
Sbjct: 1   MTEYIVLEQLDKGNIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHALLLTGNNRS 60

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLHDKNQI---TTARDQAILGI 199
           + A  E I+G+E  F  LM+ KAK++ +   + + NA+G+++       TTA +   L  
Sbjct: 61  TLALAEHIAGNEDNFTQLMNEKAKQLKLSQPSPFLNATGMNNGTNKLSTTTAIEVGKLAT 120

Query: 200 LLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGYTRNSGFN 251
            L  +FP       +    F +++  + N NK++       K+  +DG++T ++ NS ++
Sbjct: 121 RLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKLQGVDGLQTSFSTNSNYS 180

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
            V++ +  D  +++V++          +  +L+    +  +    Q  +
Sbjct: 181 FVSTAKRGDTRLISVILDADNENSTFIETKKLLQYGFDPSSYSALQAFK 229


>gi|299144553|ref|ZP_07037632.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298517641|gb|EFI41381.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 290

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 68/281 (24%), Positives = 126/281 (44%), Gaps = 29/281 (10%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYS--SI-VIDVNKNQMTGFKQ-DEPRYPAS 79
           ++  I LM  ++   + ++   +   AK  Y+  +I V+D +KN++   K  +E    AS
Sbjct: 6   VKVIIFLMVIVISAGLTLLYFCNNKLAKIDYNSKAICVMDADKNKIIFEKNANEKLKIAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILAL 135
           LTK+MT+ +  E    K L      PV     K     N S +    +     +  +   
Sbjct: 66  LTKLMTVLVAIE----KNLDWEEISPVDVESYKNMVASNASMVGFYGRERVKVKDLLYGT 121

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S  + + +     SGS + F I M+ KAK++G++ T + N  G+ ++N  +TARD A
Sbjct: 122 MLASGGEAAMSLAIKSSGSLENFVIDMNEKAKELGLKETNFSNPVGMDEENNYSTARDMA 181

Query: 196 ILGILLRKNFPQYYKYFSIRKFRY-------RNRIITNHNKLLNKMHN-------IDGIK 241
           +L     KN  ++ K F+ + +             I +   +L ++ +       I G K
Sbjct: 182 LLLNEAIKN-EEFKKIFTAKNYTTTETLDHPNGINIEST--VLKEISDEDKTDFKILGGK 238

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           +G T+ +G    T  +  +   + VV+G P  + R+   L+
Sbjct: 239 SGTTKEAGLCWATLSKKGEKNYIIVVIGAPLDELRNPTMLQ 279


>gi|164686848|ref|ZP_02210876.1| hypothetical protein CLOBAR_00444 [Clostridium bartlettii DSM
           16795]
 gi|164604238|gb|EDQ97703.1| hypothetical protein CLOBAR_00444 [Clostridium bartlettii DSM
           16795]
          Length = 336

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 122/289 (42%), Gaps = 29/289 (10%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
            ++ +V+D N  ++   +  D+  YPAS TK++T  +  E       +L+ +I V + A 
Sbjct: 52  AHAYVVMDANSGEIIMSQDADKKIYPASTTKLLTAVVAIE-----NCNLDREIEVKQAAL 106

Query: 111 --ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                  S + L+  + +T EQ +  L+  SA D +    E ++GS + FA +M+ KAK+
Sbjct: 107 NKVDVESSIVGLRAGSTYTMEQLLYMLLIVSAGDAAEVIAEEVAGSSEAFATMMNEKAKQ 166

Query: 169 IGMQNTIYKNASGLHDKNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN---- 221
           IGM ++ + N  G+   +     +TA D A L      N+ +  K      +   N    
Sbjct: 167 IGMTDSYFDNPVGMDWHSNAKIHSTAHDIAKLTQYAMANY-EIRKIVRHSFYTVDNFYNG 225

Query: 222 --RIITNHNKLLNKMHNID------GIKTGYTRNSGFNIVTSLRYK-DDPIVAVVMGMPT 272
               + + N  L K    D      G KTG T  +GF + T+ +      ++    G  T
Sbjct: 226 KSITLGSSNGFLRKRKYADNLFTVIGSKTGTTDKAGFALTTTAKDNEGREVICAFFGNST 285

Query: 273 SQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRT 321
             +  +    L+   +   T    +  +          K +M +++++ 
Sbjct: 286 RDKMYKDINRLL---INAYTTHKDELQKGILNIRYPSVKDIMDQEIEKE 331


>gi|296394587|ref|YP_003659471.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Segniliparus
           rotundus DSM 44985]
 gi|296181734|gb|ADG98640.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Segniliparus
           rotundus DSM 44985]
          Length = 407

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 97/267 (36%), Gaps = 14/267 (5%)

Query: 32  GKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIF 90
             +    ++    +  L   P +  +V D++  Q+   +    R+ PAS  K +    + 
Sbjct: 76  AALASCGVVQPPGSPALPQGPAHGWLVADLDNGQVLAAEDPHGRFRPASTVKTLLALAVL 135

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             L  K+L    Q+      A +     +++  T ++    +   +  S+N  + A    
Sbjct: 136 NELDPKQL---VQLTEGDQTADEESEHKFIQAGTTYSVFDLLEGALMVSSNGAANALARV 192

Query: 151 ISG--SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--QITTARDQAILGILLRKNFP 206
           + G          M++ A ++G ++T     SG+        ++  D A++     K   
Sbjct: 193 LGGPGGVAAAVQKMNSLADELGAKDTRATTPSGVEAPGGPSSSSPYDLALIFRAAMK-HA 251

Query: 207 QYYKYFSIRKFRYRN----RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
            + K    +            + N N +L+    + G KTGYT ++    V +       
Sbjct: 252 DFRKIVGQKSVSMHGNPDDFPLVNDNAMLDDYPGMLGGKTGYTDDAEKTFVGAAERGRRR 311

Query: 263 IVAVVM-GMPTSQERDQKALELITSFL 288
           +V   M G+  +    ++A  L+    
Sbjct: 312 LVVTQMYGLNGASTFREQAAALLDWGF 338


>gi|289649634|ref|ZP_06480977.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 313

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 104/245 (42%), Gaps = 21/245 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++VID+  +++      +   P AS+TK+MT  ++ +     K  ++  IPV+    +Q
Sbjct: 46  SAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVVLDA----KQSMDEVIPVN---ISQ 98

Query: 114 NPSKLYL----KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +    K  +       +L  +  S N  + +      G    F + M+ KAK +
Sbjct: 99  TPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 158

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI--RKFRYRNRIIT-- 225
           GM++T Y   +GL   N ++TARD   L +  RK +P   +  +   +   +R    T  
Sbjct: 159 GMKHTAYVEPTGLSVYN-VSTARDLTKLVMAARK-YPMLSELSTTEQKTVTFRKPTYTLG 216

Query: 226 --NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
             N + L+ K   +I   KTG+T  +G  +V      + P+  V++           A  
Sbjct: 217 FSNTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYTHFADASR 276

Query: 283 LITSF 287
           +    
Sbjct: 277 IRKWM 281


>gi|167578731|ref|ZP_02371605.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis TXDOH]
          Length = 349

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 101/237 (42%), Gaps = 17/237 (7%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-- 114
           ++D +  +    +  +   P AS+TK+MT  ++ +     K  L+  I V+      +  
Sbjct: 102 MVDQHTGETLFDRNSQEVVPIASVTKLMTAMVVLDS----KAPLDEPIEVTDDDRDLDKF 157

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+L +   +  + +  +   +  S N  + A   +  G  + F   M+ KA+ +GM +
Sbjct: 158 TGSRLAI--GSTLSRDDMLHIALMASENRAAAALSRYYPGGREAFVAAMNQKARSLGMVD 215

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T ++N +GL  K+ ++TARD   +     + +P   +Y +  K+      R     + N 
Sbjct: 216 TYFENPTGLS-KHNVSTARDLVKMVEAAYQ-YPLIREYSTDLKYDVDTGLRTLYYHSTNI 273

Query: 230 LLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL+    +I   KTGY + SG  +V         +V V++           A  L T
Sbjct: 274 LLHDDAWDIGIQKTGYIKESGICLVMQTTIGGRDVVMVLLDSAGRHSDFFDAARLRT 330


>gi|167616867|ref|ZP_02385498.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis Bt4]
 gi|257140788|ref|ZP_05589050.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis E264]
          Length = 349

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 101/237 (42%), Gaps = 17/237 (7%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-- 114
           ++D +  +    +  +   P AS+TK+MT  ++ +     K  L+  I V+      +  
Sbjct: 102 MVDQHTGETLFDRNSQEVVPIASVTKLMTAMVVLDS----KAPLDEPIEVTDDDRDLDKF 157

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+L +   +  + +  +   +  S N  + A   +  G  + F   M+ KA+ +GM +
Sbjct: 158 TGSRLAI--GSTLSRDDMLHIALMASENRAAAALSRYYPGGREAFVAAMNRKARSLGMVD 215

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T ++N +GL  K+ ++TARD   +     + +P   +Y +  K+      R     + N 
Sbjct: 216 TYFENPTGLS-KHNVSTARDLVKMVEAAYQ-YPLIREYSTDLKYDVDTGLRTLYYHSTNI 273

Query: 230 LLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL+    +I   KTGY + SG  +V         +V V++           A  L T
Sbjct: 274 LLHDDAWDIGIQKTGYIKESGICLVMQTTIGGRDVVMVLLDSAGRHSDFFDAARLRT 330


>gi|167772343|ref|ZP_02444396.1| hypothetical protein ANACOL_03720 [Anaerotruncus colihominis DSM
           17241]
 gi|167665446|gb|EDS09576.1| hypothetical protein ANACOL_03720 [Anaerotruncus colihominis DSM
           17241]
          Length = 516

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 103/253 (40%), Gaps = 19/253 (7%)

Query: 62  NKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNT-QIPVSKTAATQNPSKLY 119
           +  +    +   +  +PASLTK+MT  +  E     K      ++ +      Q      
Sbjct: 88  DSGERVYERNSQDKIHPASLTKIMTAIVALESGHDLKAETTDLKVYIQNYIYNQQAGGGG 147

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKN 178
           + +   +     + A++ +S N+ S    ++I  GS + F  +M+ KAK+IG  NT + N
Sbjct: 148 IYQGDQYVLYDLLNAMLIQSVNEASMMIADYIGNGSIEDFVAMMNQKAKEIGAMNTHFGN 207

Query: 179 ASGLH--DKNQITTARDQAILGILLRKN--FPQY---YKYFSIRKFRYR-NRIITNHNKL 230
            SGL+   +   TTA D A++     +N  F +      Y S    RY      T  NK+
Sbjct: 208 PSGLYVESEESYTTAYDMALIAQYAMQNNDFAEIVSRTAYTSQPTTRYPEGITWTTTNKM 267

Query: 231 L-------NKMHNIDGIKTGYTRNSG-FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           +            I GIKTG   +    N V++        + V +G P      Q+  +
Sbjct: 268 MIPNQWEGYYYEGIKGIKTGSLPDQDVINFVSTATRDGYTYLLVCLGAPYRSPDTQEIYQ 327

Query: 283 LITSFLEKKTLKH 295
              +F + + L +
Sbjct: 328 YNLAFKDTERLYN 340


>gi|289624340|ref|ZP_06457294.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|298487139|ref|ZP_07005189.1| Murein-DD-endopeptidase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298158382|gb|EFH99452.1| Murein-DD-endopeptidase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330868676|gb|EGH03385.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330891159|gb|EGH23820.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330985252|gb|EGH83355.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331008609|gb|EGH88665.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 311

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 104/245 (42%), Gaps = 21/245 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++VID+  +++      +   P AS+TK+MT  ++ +     K  ++  IPV+    +Q
Sbjct: 44  SAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVVLDA----KQSMDEVIPVN---ISQ 96

Query: 114 NPSKLYL----KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +    K  +       +L  +  S N  + +      G    F + M+ KAK +
Sbjct: 97  TPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 156

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI--RKFRYRNRIIT-- 225
           GM++T Y   +GL   N ++TARD   L +  RK +P   +  +   +   +R    T  
Sbjct: 157 GMKHTAYVEPTGLSVYN-VSTARDLTKLVMAARK-YPMLSELSTTEQKTVTFRKPTYTLG 214

Query: 226 --NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
             N + L+ K   +I   KTG+T  +G  +V      + P+  V++           A  
Sbjct: 215 FSNTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYTHFADASR 274

Query: 283 LITSF 287
           +    
Sbjct: 275 IRKWM 279


>gi|221632462|ref|YP_002521683.1| beta-lactamase [Thermomicrobium roseum DSM 5159]
 gi|221156002|gb|ACM05129.1| beta-lactamase [Thermomicrobium roseum DSM 5159]
          Length = 364

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 57/295 (19%), Positives = 121/295 (41%), Gaps = 50/295 (16%)

Query: 31  MGKILFLSII-----MISMASELHAKPKYSSI---------------VIDVNKN-QMTGF 69
           M  +L L+++      +++  E+ ++P  SS                 +D+    ++   
Sbjct: 1   MASVLMLALLGTTTRAVAVVPEVSSRPAPSSAYQPAERPTLTARASFAVDITAGVELWAQ 60

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKK---LHLNTQIPVSKTAATQNPSKLYLKEKTYF 126
           + D P  PAS TK+MT  ++  +L+  +   +  +  +  +  A          +     
Sbjct: 61  EADRPLPPASTTKLMTALVVRRWLRPDESITIRSDDLVDPAVYA------NAGFQPGDRV 114

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEK--------KFAILMSNKAKKIGMQNTIYKN 178
           T    + A++  SA D + A                   F   M+ +A ++G++++ +  
Sbjct: 115 TVTDLLAAMLIASAGDAALALARVAGERIDPEHDVPRTAFIDAMNQEAARLGLRHSWFAT 174

Query: 179 ASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK-------FRYRNRIITNHNKLL 231
             G     Q  +ARD AI+   +  + P   +  + R         + R   + N N+ L
Sbjct: 175 PDGRDVPGQTVSARDLAIIAAAVLSD-PLLAELVATRTREIEIAGPQSRRITVVNTNQFL 233

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            +  +  G+KTG +  +G  +V ++R  +D +V V++   +S++R   A  L+T 
Sbjct: 234 TE-PDALGVKTGTSVAAGQCLVAAVRRGNDIVVLVLL---SSRDRYADARALLTY 284


>gi|311896449|dbj|BAJ28857.1| putative peptidase S11 family protein [Kitasatospora setae KM-6054]
          Length = 371

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 90/247 (36%), Gaps = 18/247 (7%)

Query: 55  SSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S +V D    Q+   F       PAS  KM+    +     +  +H   ++  S+     
Sbjct: 41  SWVVADAGSGQVLAAFNAHAELPPASTLKMLFAVTVLPRFPASDVH---RVTWSELQGMG 97

Query: 114 NPSK-LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
             S  + +KE   +  E     +   S ND        ++G   K    M  +A ++  +
Sbjct: 98  AGSSLVGIKEDLDYKVEDLWRGVFLSSGNDAVHVLAN-MNGGVAKTVADMQARADRLRAR 156

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN----------- 221
           +T   +  G     Q+T+A D  +      ++ P++  Y + R  ++             
Sbjct: 157 DTHVVSPDGYDMDGQVTSAYDLTLFARAGLRD-PEFRGYCATRWAQFPGAVDKKTGQRGS 215

Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
             I N ++LL K   + G+K GYT N+G     +       ++  VM      +   +A 
Sbjct: 216 FGIANTDRLLGKYPGLIGVKNGYTTNAGATYTGAAERDGRTLLVTVMHPADGAKVYDEAA 275

Query: 282 ELITSFL 288
            L+    
Sbjct: 276 ALLDWGF 282


>gi|302559594|ref|ZP_07311936.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus
           Tu4000]
 gi|302477212|gb|EFL40305.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus
           Tu4000]
          Length = 282

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 97/254 (38%), Gaps = 25/254 (9%)

Query: 58  VIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV----SKTAAT 112
           V++    +    K  D  R   S TK+MT  ++      K L+L+ ++ +    S     
Sbjct: 32  VMNNATGKSLYTKAADTRRSTGSTTKIMTAKVVL---AQKNLNLDAKVTIQMAYSDYIVK 88

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS------EKKFAILMSNKA 166
            N S   L      T  Q +  L+  S  D + A  +            K F   M+ +A
Sbjct: 89  NNASSARLIVGDKVTVRQLLYGLMLPSGCDAAYALADKFGTGSTRAARVKSFIGKMNAEA 148

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI--- 223
            K+G++NT + +  G+   +  +T RD   +     K+   +      +K+  +      
Sbjct: 149 TKMGLKNTHFDSFDGIGKGSNYSTPRDLTKIASSAMKSS-TFRSIVKTKKYTAKTVTKTG 207

Query: 224 -------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
                   TN N LL+      G+KTG    + + +V +       ++  V+   ++ +R
Sbjct: 208 STRTMAPWTNTNTLLSSYSGTIGVKTGSGPEAKYCLVFAATRNGKTVIGTVLASSSATQR 267

Query: 277 DQKALELITSFLEK 290
           +  A +L+     K
Sbjct: 268 ETDAKKLLGYGFSK 281


>gi|302335807|ref|YP_003801014.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Olsenella uli
           DSM 7084]
 gi|301319647|gb|ADK68134.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Olsenella uli
           DSM 7084]
          Length = 305

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 67/282 (23%), Positives = 103/282 (36%), Gaps = 34/282 (12%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMASELH------------AKPKYSSIVIDV-NKNQ 65
           Y      R +      L LS + ++ A+               A    S  V DV +  +
Sbjct: 7   YRGTRAGRGLARKVPALLLSTVALACAAGPAVLQEGRRPLHPGAWRSQSVYVYDVTDDRE 66

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLK 121
           +     D+ R PASL K+MT Y+   ++      L++  PVS      A T N S     
Sbjct: 67  VISVNGDQRRAPASLAKLMTTYVALRHVDD----LSSLAPVSSEAYARAVTGNCSMAGFV 122

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
                T    + A +  S  + + +  E   GS       M+  A + G+++T Y+N  G
Sbjct: 123 PGERTTFRDLMYATMLVSGGEAAMSLAENACGSTDACVAEMNEVAGQWGLRDTSYRNVEG 182

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL--------LNK 233
           L  + Q TTARD A L     ++   +   F   +F            L        L +
Sbjct: 183 LDAEGQHTTARDVASLVRHALED-GNFRTLFCTPQFGSSPTTAHPDGVLLESTVLSKLGR 241

Query: 234 MH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
                  I G K+G T ++G    T         + VVMG P
Sbjct: 242 YDTRGFTILGGKSGTTGDAGLCWATLAEKGGHRYIVVVMGAP 283


>gi|93005508|ref|YP_579945.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Psychrobacter
           cryohalolentis K5]
 gi|92393186|gb|ABE74461.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Psychrobacter cryohalolentis K5]
          Length = 364

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 105/252 (41%), Gaps = 20/252 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKK--LHLNTQIPVSKTAA 111
           S  VID    +    K  +  R  AS+TK+MT  ++ +     +  L L+ +  V    A
Sbjct: 120 SVAVIDAETGESIYQKDADIARPMASITKVMTAIVVLDAGLDMREELTLDPEDFVGPKRA 179

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           + N     LK        + +L  + +S N  + +      G    F   M+ KA+++GM
Sbjct: 180 SSN-----LKSGDRLNRAEMLLMALMKSENPAAKSLARNYPGGYSAFIRAMNRKAQELGM 234

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-------RNRII 224
               + + +GL DK  + ++ D   +      N+    ++ + + + +        NR  
Sbjct: 235 STAFFGDPTGL-DKRNVASSNDLVKMVRAA-GNYDVIRRFSTTKSYDFFVSNFSSGNRTY 292

Query: 225 --TNHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
              N + L+       GI KTG+   +G  +V   R  + P + V++G  +S  R   A 
Sbjct: 293 KANNTSSLVRDGSYPIGISKTGFINEAGRCVVMETRVNNRPAIIVILGANSSATRWGDAK 352

Query: 282 ELITSFLEKKTL 293
            ++ S   ++T+
Sbjct: 353 NILNSLATRRTV 364


>gi|83717156|ref|YP_440158.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis E264]
 gi|83650981|gb|ABC35045.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis E264]
          Length = 373

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 101/237 (42%), Gaps = 17/237 (7%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-- 114
           ++D +  +    +  +   P AS+TK+MT  ++ +     K  L+  I V+      +  
Sbjct: 126 MVDQHTGETLFDRNSQEVVPIASVTKLMTAMVVLDS----KAPLDEPIEVTDDDRDLDKF 181

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+L +   +  + +  +   +  S N  + A   +  G  + F   M+ KA+ +GM +
Sbjct: 182 TGSRLAI--GSTLSRDDMLHIALMASENRAAAALSRYYPGGREAFVAAMNRKARSLGMVD 239

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T ++N +GL  K+ ++TARD   +     + +P   +Y +  K+      R     + N 
Sbjct: 240 TYFENPTGLS-KHNVSTARDLVKMVEAAYQ-YPLIREYSTDLKYDVDTGLRTLYYHSTNI 297

Query: 230 LLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL+    +I   KTGY + SG  +V         +V V++           A  L T
Sbjct: 298 LLHDDAWDIGIQKTGYIKESGICLVMQTTIGGRDVVMVLLDSAGRHSDFFDAARLRT 354


>gi|315651403|ref|ZP_07904428.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saburreum DSM
           3986]
 gi|315486362|gb|EFU76719.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saburreum DSM
           3986]
          Length = 326

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 103/250 (41%), Gaps = 24/250 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++I++  +   +   K   +  YPAS TK+MT  +  +Y      +L+ ++ V   + 
Sbjct: 79  AQAAIIV-KDDGSLLASKAATKKMYPASTTKVMTALLALKYS-----NLSDEVVVPDESV 132

Query: 112 --TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S   +      T ++ +  L+  S ND + A    I GS + F  +M+ +AK+I
Sbjct: 133 IDEAGASLAGIHPGDKLTLDELLYGLMLPSGNDAANAIAVHIGGSVESFVKMMNEEAKRI 192

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--------FPQYYKYFSIRKFRYRN 221
           G  +T + NA+GL D N  TTA D  ++     K+           Y   ++        
Sbjct: 193 GAVDTNFVNANGLSDDNHYTTAYDLYLILNEAMKDSRFVNYAGAASYSVTYTAADGSQIT 252

Query: 222 RIITNHNKLLNKMH------NIDGIKTGYTRNSGFNIVTSLRY-KDDPIVAVVMGMPTSQ 274
           +   N NK +          +++  KTG T  +G  +V + +    +  ++VV+      
Sbjct: 253 KNWKNGNKYITGQEVIPKGVSVEAGKTGTTFAAGSCLVLAGKNADGNRYISVVLKAQNRA 312

Query: 275 ERDQKALELI 284
                  +L+
Sbjct: 313 GLYDNMSKLL 322


>gi|326789965|ref|YP_004307786.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
           DSM 5427]
 gi|326540729|gb|ADZ82588.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
           DSM 5427]
          Length = 450

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/279 (22%), Positives = 113/279 (40%), Gaps = 25/279 (8%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           L+  I+F + +  S   ++ A     +I+I+   N +   K   +  YPAS TK++T   
Sbjct: 9   LLCFIIFSNSLFASALPDISAD---GAILIEPKTNTIIYSKNMYQTFYPASTTKILTALA 65

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           + +      L  +  I  ++TAA +   + S++ LK    +T   G+ A++  S N V  
Sbjct: 66  VLQ-----DLPTDMIITKTQTAADEVPADSSQIGLKVGDQYTVLDGLYAVLMASDNYVCY 120

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
                  G+   FA  M+  A       + + N  G HD +  TT  D + +      + 
Sbjct: 121 DLALADKGNISTFAKRMNGLAIDSNALFSHFINPHGYHDPDHYTTPYDLSQIAKAAFDD- 179

Query: 206 PQYYKYFSIRKFRYR------NRIITNHNKLLNK---MHN--IDGIKTGYTRNSGFNIVT 254
           P   K      + ++         +T+ + LL+K    +N  +   KTGY   +G  +V 
Sbjct: 180 PILTKIAGTSSYNFKVANSDVVIPLTHTSALLDKNSPYYNSHVVASKTGYHTPAGRTLVA 239

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
              Y +  ++ VVM      +  +   +L        TL
Sbjct: 240 KAVYDNIELIGVVMRTDAPNQ-FEDMNKLFEYGASNFTL 277


>gi|187921395|ref|YP_001890427.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           phytofirmans PsJN]
 gi|187719833|gb|ACD21056.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           phytofirmans PsJN]
          Length = 410

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 99/240 (41%), Gaps = 15/240 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S  V+D     +   KQ +   P AS++K+MT  +  +   +    LN  + V     
Sbjct: 168 ARSVYVVDERTQTVLAEKQADRVMPIASVSKLMTAVVALDAKHALNAPLN--VTVQDQDF 225

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   S+  L   +  +    +   +  S N  + A     +G    F   M+ KA+ +G
Sbjct: 226 DKFTGSR--LSVGSTLSRHDMLHIALMSSENRAAAALSRDYTGGRPGFVAAMNAKARLLG 283

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK---FRYRNR---II 224
           M++T + N +GL  +N ++TARD ++L     + +P    Y + R         R     
Sbjct: 284 MRHTSFVNGTGLSAQN-VSTARDLSLLVAAASR-YPLIRAYSTDRDQVVLPGGGRASLSY 341

Query: 225 TNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            N N L+     +I   KTG+   +G  +V  ++    P+  VV+G P + +       +
Sbjct: 342 HNSNALVRGGDRSIVLQKTGFINEAGHCVVVRMKVHGRPVDIVVLGAPGAHDHIADVARI 401


>gi|120403175|ref|YP_953004.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955993|gb|ABM12998.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
           vanbaalenii PYR-1]
          Length = 278

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 98/242 (40%), Gaps = 12/242 (4%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P  + +V D++  ++   K     Y PAS  K++    + ++L+            +++ 
Sbjct: 45  PAEAWLVADLDTGRVLASKNPYGTYAPASTIKVLLAMTVLDHLRPDNFA-----RANESH 99

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S + L+    +TT Q + A++  S ND +    + + G        M+ KA  +G
Sbjct: 100 TRVECSCVGLQPGQAYTTAQLVAAILMVSGNDAANMLADMLGGQRVA-VAAMNRKAALVG 158

Query: 171 MQNTIYKNASGLHDKN--QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
            ++T   + SGL       +TT  D A++     K +P   +        +  + + N N
Sbjct: 159 ARSTRASSPSGLDGPGWESVTTPHDLAVIMRAALK-YPLIAQIMRSPSAPFPGKTLHNQN 217

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +LL++       KTG+T  +    V + +  +  +V V M      +    A+ L+    
Sbjct: 218 ELLSRYPGDLAGKTGFTNLARKTYVGAAQRGNRRLVVVQMYGTG--DLYGHAIRLLDYGF 275

Query: 289 EK 290
            +
Sbjct: 276 SQ 277


>gi|114562029|ref|YP_749542.1| D-alanyl-D-alanine endopeptidase [Shewanella frigidimarina NCIMB
           400]
 gi|114333322|gb|ABI70704.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Shewanella frigidimarina NCIMB 400]
          Length = 302

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 63/272 (23%), Positives = 110/272 (40%), Gaps = 24/272 (8%)

Query: 37  LSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIF 90
           LS  M   A  +  KP+      S++++D+  N++      ++P   AS+TK+M   +  
Sbjct: 17  LSSPMSFAAQAVQNKPQQELASASAMLVDLTTNEVLYSSNPNQPVPIASVTKLMAAMVTL 76

Query: 91  EYLQSKKLHLNTQ--IPVSKTAATQNP-SKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           +     KL L+ +  + ++ +   +N  S++ L   +  T E  +L  +  S N  +T+ 
Sbjct: 77  DA----KLALDEKISVKITDSPVMRNIYSRVRL--GSVVTRETMLLLTLMSSENRAATSL 130

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
                G  K F   M++KA  +GM  T Y   +GL   + +++A D  +L     + +P 
Sbjct: 131 AHNYPGGFKAFVRAMNDKATALGMSQTRYVEPTGLS-PDNVSSANDLILLLKA-SQTYPL 188

Query: 208 YYKYFSIRKFRYR------NRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
             K  S  K               N NKL+     NI   KTG+T  +G  +V       
Sbjct: 189 LGKLSSTTKKHVNFESPRYALDFQNTNKLVFKNNWNIALTKTGFTNKAGHCLVMLTEMNK 248

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
             +  VV+           A  L       +T
Sbjct: 249 RKVAFVVLDSFGKYTHMADANRLKNWLETGRT 280


>gi|296395141|ref|YP_003660025.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Segniliparus
           rotundus DSM 44985]
 gi|296182288|gb|ADG99194.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Segniliparus
           rotundus DSM 44985]
          Length = 304

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 95/256 (37%), Gaps = 18/256 (7%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLN 101
           + + E+   P  + ++ D++  ++   K       PAS  K +    + + +      L+
Sbjct: 46  AGSPEVPDGPAEAWLLADMDSGEILAAKNPYAYHAPASTIKTLLALTVIDEV-----PLD 100

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
           + +  +++      S + +     ++  Q +  L+  S ND +    E + G +      
Sbjct: 101 STVLANRSDLA-ECSCVGVTTGREYSVRQLLDGLLLVSGNDAANTLAEALGGFDAA-VAK 158

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQ--ITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
           M+ KA +IG  +T   + SGL        TT RD A++        P + +  +     +
Sbjct: 159 MNEKAAEIGASDTRTGSPSGLDWPGMEMHTTPRDLAVIFREALSR-PVFAEITAEPTALF 217

Query: 220 RNRI----ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM---GMPT 272
                   I N ++LL       G KTG+T  +    V +       +V  +M     P 
Sbjct: 218 PGDSGEDEIRNQDELLTLYPGALGGKTGFTNAARKTFVGAAERDGRRLVVSMMHGLNAPG 277

Query: 273 SQERDQKALELITSFL 288
                 +A  L+    
Sbjct: 278 GPTYWDQAQALLDWGF 293


>gi|184156063|ref|YP_001844403.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus fermentum IFO
           3956]
 gi|183227407|dbj|BAG27923.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus fermentum IFO
           3956]
          Length = 417

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 111/261 (42%), Gaps = 30/261 (11%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLN 101
           ++A+        ++I ID    Q+   K    RYP AS+ K++TL +I + ++  KL  +
Sbjct: 28  AVANASSTVDARAAITIDAETGQVLYEKNATKRYPIASVIKILTLAVIEQDIEQGKLKWD 87

Query: 102 TQIPVSKTAATQNP----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
            +I +SK  A        S + L E   +T +  + +++  SA+  + A     +GS   
Sbjct: 88  QKIKISKEVAKVANDWRFSNVQLNEGESYTVKSLVESMMIVSADGSAEALALASAGSTAA 147

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRK 203
           F   M   AK+ G+ +    N  GL + +                 +A+D A +   L +
Sbjct: 148 FNQKMQAVAKEAGVTDAKIYNMIGLANGDLGEMRLKNVSKKAENQLSAKDVAKIARYLVE 207

Query: 204 NFPQYYKYFSIRKFRY-----RNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNI 252
            +P   +    +   +     +   + N N +L +         +DG+KTG T +SG+  
Sbjct: 208 KYPSVLEITKQKFVNFQVSDSQQYEMVNINSMLPQNAAASTHGEVDGLKTGMTDSSGYCF 267

Query: 253 VTSLRYKDDPIVAVVMGMPTS 273
           V +  +    ++ VV+ +P  
Sbjct: 268 VGTGTFNGRRLITVVLKVPGE 288


>gi|60101256|gb|AAX13706.1| penicillin-binding protein 4 [Staphylococcus aureus]
          Length = 431

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 102/263 (38%), Gaps = 29/263 (11%)

Query: 62  NKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPS 116
              Q+   +  D    PAS+TK+MT+Y+  E +   +L L+  + ++            S
Sbjct: 57  QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVRMTNKEYIMSTLPELS 116

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L     +T    +   ++ S+N  +    + +S +   F  LM+NKAK IGM+NT +
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176

Query: 177 KNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
            N +G                 +  +TTARD AIL + + K  P+   +           
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLRVIKETPKILDFTKQLAPTTHAV 236

Query: 223 IITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT------ 272
                N  L      +   DG+KTG +  + +N   + +     I  V+MG         
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296

Query: 273 SQERDQKALELITSFLEKKTLKH 295
            ++R+     L+    ++     
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVK 319


>gi|53721488|ref|YP_110473.1| peptidase [Burkholderia pseudomallei K96243]
 gi|76819779|ref|YP_337155.1| peptidase [Burkholderia pseudomallei 1710b]
 gi|52211902|emb|CAH37907.1| family S11 unassigned peptidase [Burkholderia pseudomallei K96243]
 gi|76584252|gb|ABA53726.1| family S11 unassigned peptidase [Burkholderia pseudomallei 1710b]
          Length = 362

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 17/237 (7%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-- 114
           ++D +  +    +      P AS+TK+MT  ++ +        L+ +I V+     Q+  
Sbjct: 115 MVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVLDS----NAPLDERIEVTDDDRDQDKF 170

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+L +   +  + +  +   +  S N  + A   +  G  + F   M+ KA+ +GM +
Sbjct: 171 TGSRLAI--GSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVD 228

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T ++N +GL  K+ +++ARD A +     + +P   +Y +  K+      R     + N 
Sbjct: 229 TYFENPTGLS-KHNVSSARDLAKMVEAAYQ-YPLIRQYSTDLKYDVDTGLRTLYYHSTNV 286

Query: 230 LLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL     NI   KTGY + SG  +V         +V V++           A  L T
Sbjct: 287 LLRDNAWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFFDAARLRT 343


>gi|167921747|ref|ZP_02508838.1| family S11 unassigned peptidase [Burkholderia pseudomallei BCC215]
          Length = 350

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 17/237 (7%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-- 114
           ++D +  +    +      P AS+TK+MT  ++ +        L+ +I V+     Q+  
Sbjct: 103 MVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVLDS----NAPLDERIEVTDDDRDQDKF 158

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+L +   +  + +  +   +  S N  + A   +  G  + F   M+ KA+ +GM +
Sbjct: 159 TGSRLAI--GSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVD 216

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T ++N +GL  K+ +++ARD A +     + +P   +Y +  K+      R     + N 
Sbjct: 217 TYFENPTGLS-KHNVSSARDLAKMVEAAYQ-YPLIRQYSTDLKYDVDTGLRTLYYHSTNV 274

Query: 230 LLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL     NI   KTGY + SG  +V         +V V++           A  L T
Sbjct: 275 LLRDNAWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFFDAARLRT 331


>gi|118386189|ref|XP_001026215.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila]
 gi|89307982|gb|EAS05970.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila SB210]
          Length = 1085

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/288 (21%), Positives = 114/288 (39%), Gaps = 47/288 (16%)

Query: 58  VIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYL------QSKKLHL----NTQIPV 106
           V D++K + +   K  +    AS+TK+MT YI+ + L      ++ ++ L    +  I V
Sbjct: 577 VYDLDKKEFVLRIKGQKLSQIASITKIMTCYIVCDLLNKYDFKRNDEIKLTLKKDQIITV 636

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-------------- 152
           SK A+    +   L+     T    +  L+  S ND + A  E +               
Sbjct: 637 SKIASKMIGTSALLRHGDQLTLWDLLHGLMLPSGNDAAFAISEHVGSLIYESSPIFQQKK 696

Query: 153 ------------GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
                         +K+F  +M+  A+K+ +Q T Y+N  GL +    + A D  IL   
Sbjct: 697 YQNPKLVSCNPKAGQKEFIKVMNQYAQKLKLQKTFYQNPHGLTNSKNKSCADDICILISH 756

Query: 201 LRKNFPQYYKYFSIRKFRY---------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
             KN   + +     ++           R +   N NKLL       G+KTG T  +G  
Sbjct: 757 AMKN-QYFREIVKTIEYTAKISNSRKGSREQTWENTNKLLKSSCYCIGVKTGITPAAGAC 815

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTH 299
           + +     +   V V++   T + R  + +++    ++   L  Q ++
Sbjct: 816 LSSCFSINNRNFVIVILNTLTLEMRFTETIQIFKFLVDIYQLDKQSSN 863


>gi|126445342|ref|YP_001061703.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 668]
 gi|126224833|gb|ABN88338.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           668]
          Length = 350

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 17/237 (7%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-- 114
           ++D +  +    +      P AS+TK+MT  ++ +        L+ +I V+     Q+  
Sbjct: 103 MVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVLDS----NAPLDERIEVTDDDRDQDKF 158

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+L +   +  + +  +   +  S N  + A   +  G  + F   M+ KA+ +GM +
Sbjct: 159 TGSRLAI--GSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVD 216

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T ++N +GL  K+ +++ARD A +     + +P   +Y +  K+      R     + N 
Sbjct: 217 TYFENPTGLS-KHNVSSARDLAKMVEAAYQ-YPLIRQYSTDLKYDVDTGLRTLYYHSTNV 274

Query: 230 LLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL     NI   KTGY + SG  +V         +V V++           A  L T
Sbjct: 275 LLRDNAWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFFDAARLRT 331


>gi|295838237|ref|ZP_06825170.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB74]
 gi|197698211|gb|EDY45144.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB74]
          Length = 1017

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 70/279 (25%), Positives = 123/279 (44%), Gaps = 20/279 (7%)

Query: 46  SELHAKPKYSSIVIDVNK-NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +     PK     +DV+           +P   AS+ K+MT Y++      KK      I
Sbjct: 658 AAPMPWPKSGQAAMDVDGLGSFGSSGAQKPVPIASVAKVMTAYLVLRDHPVKKGTDGASI 717

Query: 105 PVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            + + A        QN S + +      +  + I A++  SAN+++     + +GSEK+F
Sbjct: 718 TMDQKAEDDAGLSAQNESTVPVHAGQKLSQREAIEAIMLASANNIARQLARWDAGSEKEF 777

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
              M+  A  +GM+NT Y + SGL +K  ++TA DQ  LG +  K+ P + +   +  + 
Sbjct: 778 VTKMNEAANDLGMRNTTYTDPSGL-NKTTVSTAEDQVRLGKVAMKD-PLFREVVRMPSYE 835

Query: 219 Y-RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY--KD--DPIVAVVMGMPTS 273
                  TN N+L+  M+N  GIKTG T  +G N++ +           IV  V+  P +
Sbjct: 836 DSNGTTQTNWNRLV-PMNNTVGIKTGTTTAAGGNLLYAATKEVGGTTRTIVGAVLAQPPA 894

Query: 274 QERDQKALELITSF-----LEKKTLKHQQTHRKDNLSST 307
            E +      + +        + TL  ++  +K ++  T
Sbjct: 895 PEDNSILTGALNAGKALIEAAQGTLVAEKVVKKGDVVGT 933


>gi|167905525|ref|ZP_02492730.1| family S11 unassigned peptidase [Burkholderia pseudomallei NCTC
           13177]
          Length = 365

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 17/237 (7%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-- 114
           ++D +  +    +      P AS+TK+MT  ++ +        L+ +I V+     Q+  
Sbjct: 118 MVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVLDS----NAPLDERIEVTDDDRDQDKF 173

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+L +   +  + +  +   +  S N  + A   +  G  + F   M+ KA+ +GM +
Sbjct: 174 TGSRLAI--GSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVD 231

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T ++N +GL  K+ +++ARD A +     + +P   +Y +  K+      R     + N 
Sbjct: 232 TYFENPTGLS-KHNVSSARDLAKMVEAAYQ-YPLIRQYSTDLKYDVDTGLRTLYYHSTNV 289

Query: 230 LLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL     NI   KTGY + SG  +V         +V V++           A  L T
Sbjct: 290 LLRDNAWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFFDAARLRT 346


>gi|299783572|gb|ADJ41570.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus fermentum CECT
           5716]
          Length = 421

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 111/261 (42%), Gaps = 30/261 (11%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLN 101
           ++A+        ++I ID    Q+   K    RYP AS+ K++TL +I + ++  KL  +
Sbjct: 32  AVANASSTVDARAAITIDAETGQVLYEKNATKRYPIASVIKILTLAVIEQDIEQGKLKWD 91

Query: 102 TQIPVSKTAATQNP----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
            +I +SK  A        S + L E   +T +  + +++  SA+  + A     +GS   
Sbjct: 92  QKIKISKEVAKVANDWRFSNVQLNEGESYTVKSLVESMMIVSADGSAEALALASAGSTAA 151

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRK 203
           F   M   AK+ G+ +    N  GL + +                 +A+D A +   L +
Sbjct: 152 FNQKMQAVAKEAGVTDAKIYNMIGLANGDLGEMRLKNVSKKAENQLSAKDVAKIARYLVE 211

Query: 204 NFPQYYKYFSIRKFRY-----RNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNI 252
            +P   +    +   +     +   + N N +L +         +DG+KTG T +SG+  
Sbjct: 212 KYPSVLEITKQKFVNFQVSDSQQYEMVNINSMLPQNAAASTHGEVDGLKTGMTDSSGYCF 271

Query: 253 VTSLRYKDDPIVAVVMGMPTS 273
           V +  +    ++ VV+ +P  
Sbjct: 272 VGTGTFNGRRLITVVLKVPGE 292


>gi|56962947|ref|YP_174674.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16]
 gi|56909186|dbj|BAD63713.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16]
          Length = 304

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 95/243 (39%), Gaps = 18/243 (7%)

Query: 58  VIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           V++    ++   +  E   YPASLTK+MT  +  E ++         +         N S
Sbjct: 53  VMERETGRVVYEENAEAKVYPASLTKIMTTIVALEQIEDLSAIAPVDVTTYHEMVASNAS 112

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
                 +   T    +   +  S  + + +    + G+ + F  +M++KA ++G+  T +
Sbjct: 113 MAGFFGREDVTYRDLLYGTMLTSGGEAANSLAVHVGGNVENFVQMMNDKAAELGLNGTHF 172

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM-- 234
            N  GLH++ Q TTA D A L      N   +   F+ + F+           LL     
Sbjct: 173 TNPEGLHNEKQYTTASDIAKLLDYALNNS-DFKTIFTTKMFQTTPTAEHPDGLLLQSTVL 231

Query: 235 ----------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKA 280
                      +I G K+G T  +G    T    +D   + +VMG P    +  +R Q A
Sbjct: 232 TFLHKKEQDRFDILGGKSGTTYEAGQCWATLGLVEDTEYITIVMGAPLKDISHPDRAQIA 291

Query: 281 LEL 283
             L
Sbjct: 292 DTL 294


>gi|254296746|ref|ZP_04964200.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 406e]
 gi|157806643|gb|EDO83813.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 406e]
          Length = 350

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 17/237 (7%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-- 114
           ++D +  +    +      P AS+TK+MT  ++ +        L+ +I V+     Q+  
Sbjct: 103 MVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVLDS----NAPLDERIEVTDDDRDQDKF 158

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+L +   +  + +  +   +  S N  + A   +  G  + F   M+ KA+ +GM +
Sbjct: 159 TGSRLAI--GSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVD 216

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T ++N +GL  K+ +++ARD A +     + +P   +Y +  K+      R     + N 
Sbjct: 217 TYFENPTGLS-KHNVSSARDLAKMVEAAYQ-YPLIRQYSTDLKYDVDTGLRTLYYHSTNV 274

Query: 230 LLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL     NI   KTGY + SG  +V         +V V++           A  L T
Sbjct: 275 LLRDNAWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFFDAARLRT 331


>gi|290958940|ref|YP_003490122.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei 87.22]
 gi|260648466|emb|CBG71577.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei
           87.22]
          Length = 282

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 62/279 (22%), Positives = 106/279 (37%), Gaps = 25/279 (8%)

Query: 32  GKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYI 88
           G ++   ++  + A    AKP      + VI+    +  G     PR   S TK+MT  +
Sbjct: 4   GAMIATGVVGSAPAQAAVAKPTLNAKGAFVINPATGRSFGKTATTPRATGSTTKIMTAKV 63

Query: 89  IFEYLQSKKLHLNTQIPV----SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           +      K L+L+ ++ V    S      + S   L      T  Q +  L+  S  D +
Sbjct: 64  VL---SQKNLNLDAKVTVAGAYSDYIVKNDASSARLIVGDKVTVRQLLYGLMLPSGCDAA 120

Query: 145 TAFGEFISGS------EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
            A  +            K F   M++ AK +GM NT + +  G+ +    ++ +D   L 
Sbjct: 121 YALADKFGTGSTRAARVKSFIGKMNSTAKSLGMTNTKFDSFDGISNGTNQSSPKDLTTLA 180

Query: 199 ILLRKN--FPQYYKYFSIRKFR------YRNRIITNHNK-LLNKMHNIDGIKTGYTRNSG 249
             + KN  F    K  + ++        YR     N NK LL   +   GIKTG    + 
Sbjct: 181 RSVMKNSTFKTIVKTVTTKQKVTTKSGGYRYYTWENTNKPLLTTYNGTIGIKTGSGTEAK 240

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           + +V +       I   V+   ++  R   A +L+    
Sbjct: 241 YCLVFAATRNGKTIYGTVLTATSADARLADAKKLLNYGF 279


>gi|254185373|ref|ZP_04891961.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1655]
 gi|254187257|ref|ZP_04893771.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|157934939|gb|EDO90609.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|184209608|gb|EDU06651.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1655]
          Length = 350

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 17/237 (7%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-- 114
           ++D +  +    +      P AS+TK+MT  ++ +        L+ +I V+     Q+  
Sbjct: 103 MVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVLDS----NAPLDERIEVTDDDRDQDKF 158

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+L +   +  + +  +   +  S N  + A   +  G  + F   M+ KA+ +GM +
Sbjct: 159 TGSRLAI--GSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVD 216

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T ++N +GL  K+ +++ARD A +     + +P   +Y +  K+      R     + N 
Sbjct: 217 TYFENPTGLS-KHNVSSARDLAKMVEAAYQ-YPLIRQYSTDLKYDVDTGLRTLYYHSTNV 274

Query: 230 LLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL     NI   KTGY + SG  +V         +V V++           A  L T
Sbjct: 275 LLRDNAWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFFDAARLRT 331


>gi|326442247|ref|ZP_08216981.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
          Length = 305

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 109/291 (37%), Gaps = 30/291 (10%)

Query: 28  IQLMGKILFLSIIMISMA-SELHAKPKYSSI---VIDVNKNQMTGFKQD-EPRYPASLTK 82
           + L G +L  +  + + A +     PK S     ++D+   +    K D   R  AS TK
Sbjct: 7   VVLAGGLLLTASPLTAPAHAATRPAPKISGAAGYLMDLKTGKSVFSKSDSTRRQMASTTK 66

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYLKEKTYFTTEQGILALITR 138
           + T   +     +K L LN ++ V +      A +  S   LK     T  Q + AL+  
Sbjct: 67  VATAITVL---TTKGLDLNRKLTVKQSYRDYVAREKGSTADLKTGDKLTVRQLLHALMLP 123

Query: 139 SANDVSTAFGEFISGSE------KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ-ITTA 191
           S  D + A  +            K F  +M+ KA  + ++NT + +  G+    Q  TT 
Sbjct: 124 SGCDAAYALADAFGKGTTTAARTKSFIGMMNKKAADLKLKNTKFDSFDGISPGGQNYTTP 183

Query: 192 RDQAILGILLRKN--------FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTG 243
            D   L      N           Y+   +    + R    TN N LL     + GIKTG
Sbjct: 184 SDLTKLAKHAFSNQLFRDVVKTRTYHATATAANGKKRYYTWTNTNTLLGSYQGMVGIKTG 243

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
               +G  +V +        + VV+  P   +R + A +++         K
Sbjct: 244 SGSKAGKCLVFAATRGSKTYIGVVLNGP---DRFRDAEKMLNHAFGTTGAK 291


>gi|167827077|ref|ZP_02458548.1| family S11 unassigned peptidase [Burkholderia pseudomallei 9]
 gi|167897149|ref|ZP_02484551.1| family S11 unassigned peptidase [Burkholderia pseudomallei 7894]
          Length = 349

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 17/237 (7%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-- 114
           ++D +  +    +      P AS+TK+MT  ++ +        L+ +I V+     Q+  
Sbjct: 102 MVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVLDS----NAPLDERIEVTDDDRDQDKF 157

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+L +   +  + +  +   +  S N  + A   +  G  + F   M+ KA+ +GM +
Sbjct: 158 TGSRLAI--GSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVD 215

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T ++N +GL  K+ +++ARD A +     + +P   +Y +  K+      R     + N 
Sbjct: 216 TYFENPTGLS-KHNVSSARDLAKMVEAAYQ-YPLIRQYSTDLKYDVDTGLRTLYYHSTNV 273

Query: 230 LLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL     NI   KTGY + SG  +V         +V V++           A  L T
Sbjct: 274 LLRDNAWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFFDAARLRT 330


>gi|167741512|ref|ZP_02414286.1| family S11 unassigned peptidase [Burkholderia pseudomallei 14]
 gi|167818703|ref|ZP_02450383.1| family S11 unassigned peptidase [Burkholderia pseudomallei 91]
          Length = 349

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 17/237 (7%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-- 114
           ++D +  +    +      P AS+TK+MT  ++ +        L+ +I V+     Q+  
Sbjct: 102 MVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVLDS----NAPLDERIEVTDDDRDQDKF 157

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+L +   +  + +  +   +  S N  + A   +  G  + F   M+ KA+ +GM +
Sbjct: 158 TGSRLAI--GSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVD 215

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T ++N +GL  K+ +++ARD A +     + +P   +Y +  K+      R     + N 
Sbjct: 216 TYFENPTGLS-KHNVSSARDLAKMVEAAYQ-YPLIRQYSTDLKYDVDTGLRTLYYHSTNV 273

Query: 230 LLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL     NI   KTGY + SG  +V         +V V++           A  L T
Sbjct: 274 LLRDNAWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFFDAARLRT 330


>gi|269123281|ref|YP_003305858.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Streptobacillus moniliformis DSM 12112]
 gi|268314607|gb|ACZ00981.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Streptobacillus moniliformis DSM 12112]
          Length = 375

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 112/246 (45%), Gaps = 23/246 (9%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           VID+N  ++           ASLTK+M + +  + +   K  L+ ++   K  A      
Sbjct: 39  VIDINS-ELIS-------PIASLTKVMNVIVAKDEISKGKFSLSDKVTFDKYTAFITGGS 90

Query: 118 LYLKEKT-YFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTI 175
           +        +T E  + A +  S+N+ + A  + I  G    F ILM+ KA+++GM NT 
Sbjct: 91  ISAWSGDNSYTLEDLLKAQMIFSSNNAAYATAKHIGLGDIDNFIILMNKKARELGMYNTY 150

Query: 176 YKNASGLHDKNQI------TTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-----RII 224
           + + +GL  +         +TA+D  +L     +N     +Y + +   + N     R+ 
Sbjct: 151 FASPAGLPPRLNKGFGMDISTAKDLYLLAKYAIEN-TDILEYSNKKSITFPNSRDPLRMY 209

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
            N   +L +   + G+KTGY   +GFNI+   +  D  ++++ +   T ++R     E++
Sbjct: 210 YNRITMLGEY-GVVGLKTGYHDEAGFNIIIISKIGDSTVISISLNSETEKQRYILQREIL 268

Query: 285 TSFLEK 290
           +   E+
Sbjct: 269 SKLSER 274


>gi|320324554|gb|EFW80631.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320328927|gb|EFW84926.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 311

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 104/245 (42%), Gaps = 21/245 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++VID+  +++      +   P AS+TK+MT  ++ +     K  ++  IPV+    +Q
Sbjct: 44  SAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVVLDA----KQSMDEVIPVN---ISQ 96

Query: 114 NPSKLYL----KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +    K  +       +L  +  S N  + +      G    F + M+ KAK +
Sbjct: 97  TPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 156

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI--RKFRYRNRIIT-- 225
           GM++T Y   +GL   N ++TARD   L +  RK +P   +  +   +   +R    T  
Sbjct: 157 GMKHTAYVEPTGLSVYN-VSTARDLTKLVMAARK-YPMLSELSTTEQKMVTFRKPTYTLG 214

Query: 226 --NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
             N + L+ K   +I   KTG+T  +G  +V      + P+  V++           A  
Sbjct: 215 FSNTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYTHFADASR 274

Query: 283 LITSF 287
           +    
Sbjct: 275 IRKWM 279


>gi|238855155|ref|ZP_04645477.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
           269-3]
 gi|260665532|ref|ZP_05866378.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus jensenii
           SJ-7A-US]
 gi|282932568|ref|ZP_06337990.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
           208-1]
 gi|313473146|ref|ZP_07813630.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus jensenii 1153]
 gi|238832236|gb|EEQ24551.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
           269-3]
 gi|239528609|gb|EEQ67610.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus jensenii 1153]
 gi|260560653|gb|EEX26631.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus jensenii
           SJ-7A-US]
 gi|281303316|gb|EFA95496.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
           208-1]
          Length = 422

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 57/315 (18%), Positives = 124/315 (39%), Gaps = 34/315 (10%)

Query: 32  GKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIF 90
           G  +F S  + ++ +        ++I ID    ++   K      P AS++K++T+Y+  
Sbjct: 24  GGTVFASTSINNVNANEAKLNVKAAITIDQKTGEVLYAKNAAKALPIASMSKLITIYLTL 83

Query: 91  EYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           + +++ KL  N ++  +K         + S + L+EK  +T +Q   A +  SAN     
Sbjct: 84  QAIKNGKLSWNQKLTPTKNIVKLSNNSDYSNVPLQEKHQYTVKQLYEASLIESANGAVMM 143

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK--------------NQITTAR 192
             + + GS++     M    KK  +         GL +                    A 
Sbjct: 144 LAQAVYGSQENAVNQMRTLLKKWQINGAQIYTTCGLKNGEVGSDAYPGAGKNVENEVPAV 203

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRN----RIITNHNKLLNKM------HNIDGIKT 242
             A +   L  ++P+      + +  +++      + N N +L  +      + +DG+KT
Sbjct: 204 GVAKIVDHLLTDYPEVLSTSKLAELDFKDGSTVTKMKNWNWMLKGLSQYDSEYPLDGLKT 263

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS-FLEKKTLKHQQ 297
           G +  +G     +L+YK   ++ +VMG      T   R  +  +++   +   +   +++
Sbjct: 264 GTSEKAGACFAGTLKYKGRRLITIVMGAKHVDGTDPSRFVQTKKMLDYVYSNYQLYIYKK 323

Query: 298 THRKDNLSSTSLKKS 312
             +  NL    +   
Sbjct: 324 GTQLANLKGVKVADG 338


>gi|25010217|ref|NP_734612.1| hypothetical protein gbs0142 [Streptococcus agalactiae NEM316]
 gi|77414952|ref|ZP_00791047.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae 515]
 gi|23094569|emb|CAD45787.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77158996|gb|EAO70212.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae 515]
          Length = 395

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 63/259 (24%), Positives = 110/259 (42%), Gaps = 32/259 (12%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           KPK +SIVID NK  +      +  R PAS++KM TLY++FE L   K  LNT +  ++T
Sbjct: 45  KPK-ASIVID-NKGHILWEDNADLERDPASMSKMFTLYLLFEDLAKGKTSLNTTVTATET 102

Query: 110 AAT----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSN 164
                     S   +     +   + I      S+N  +      +S  +   F   ++ 
Sbjct: 103 DQAISKIYEISNNNIHAGVAYPIRELITMTAVPSSNVATIMIANHLSQNNPDAFIKRINE 162

Query: 165 KAKKIGMQNTIYKNASGL---------------HDKNQITTARDQAILGILLRKNFPQYY 209
            AKK+ M  T + N SG                ++   +TTARD +IL     K +P   
Sbjct: 163 TAKKLDMTKTHFYNPSGAVASAFNGLYSPKEYDNNATNVTTARDLSILTYHFLKKYPDIL 222

Query: 210 KYFSIRKF-----RYRNRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
            Y    +             T +N         +  +DG+KTG + ++ FN + + + ++
Sbjct: 223 NYTKYPEVKAMVGTPYEETFTTYNYSTPGAKFGLEGVDGLKTGSSPSAAFNALVTAKRQN 282

Query: 261 DPIVAVVMGMPTSQERDQK 279
             ++ V++G+    ++D +
Sbjct: 283 TRLITVILGVGDWSDQDGE 301


>gi|126456044|ref|YP_001074647.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106a]
 gi|242313626|ref|ZP_04812643.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106b]
 gi|126229812|gb|ABN93225.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106a]
 gi|242136865|gb|EES23268.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106b]
          Length = 350

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 17/237 (7%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-- 114
           ++D +  +    +      P AS+TK+MT  ++ +        L+ +I V+     Q+  
Sbjct: 103 MVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVLDS----NAPLDERIEVTDDDRDQDKF 158

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+L +   +  + +  +   +  S N  + A   +  G  + F   M+ KA+ +GM +
Sbjct: 159 TGSRLAI--GSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVD 216

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T ++N +GL  K+ +++ARD A +     + +P   +Y +  K+      R     + N 
Sbjct: 217 TYFENPTGLS-KHNVSSARDLAKMVEAAYQ-YPLIRQYSTDLKYDVDTGLRTLYYHSTNV 274

Query: 230 LLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL     NI   KTGY + SG  +V         +V V++           A  L T
Sbjct: 275 LLRDSAWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFFDAARLRT 331


>gi|167848574|ref|ZP_02474082.1| family S11 unassigned peptidase [Burkholderia pseudomallei B7210]
          Length = 349

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 17/237 (7%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-- 114
           ++D +  +    +      P AS+TK+MT  ++ +        L+ +I V+     Q+  
Sbjct: 102 MVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVLDS----NAPLDERIEVTDDDRDQDKF 157

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+L +   +  + +  +   +  S N  + A   +  G  + F   M+ KA+ +GM +
Sbjct: 158 TGSRLAI--GSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVD 215

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T ++N +GL  K+ +++ARD A +     + +P   +Y +  K+      R     + N 
Sbjct: 216 TYFENPTGLS-KHNVSSARDLAKMVEAAYQ-YPLIRQYSTDLKYDVDTGLRTLYYHSTNV 273

Query: 230 LLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL     NI   KTGY + SG  +V         +V V++           A  L T
Sbjct: 274 LLRDSAWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFFDAARLRT 330


>gi|217424602|ref|ZP_03456100.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           576]
 gi|237508406|ref|ZP_04521121.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei MSHR346]
 gi|217392526|gb|EEC32550.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           576]
 gi|235000611|gb|EEP50035.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei MSHR346]
          Length = 373

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 17/237 (7%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-- 114
           ++D +  +    +      P AS+TK+MT  ++ +        L+ +I V+     Q+  
Sbjct: 126 MVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVLDS----NAPLDERIEVTDDDRDQDKF 181

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+L +   +  + +  +   +  S N  + A   +  G  + F   M+ KA+ +GM +
Sbjct: 182 TGSRLAI--GSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVD 239

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T ++N +GL  K+ +++ARD A +     + +P   +Y +  K+      R     + N 
Sbjct: 240 TYFENPTGLS-KHNVSSARDLAKMVEAAYQ-YPLIRQYSTDLKYDVDTGLRTLYYHSTNV 297

Query: 230 LLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL     NI   KTGY + SG  +V         +V V++           A  L T
Sbjct: 298 LLRDNAWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFFDAARLRT 354


>gi|134283054|ref|ZP_01769756.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 305]
 gi|226196446|ref|ZP_03792027.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|254198846|ref|ZP_04905264.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei S13]
 gi|254263948|ref|ZP_04954813.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1710a]
 gi|134245702|gb|EBA45794.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 305]
 gi|169657018|gb|EDS88412.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei S13]
 gi|225931322|gb|EEH27328.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|254214950|gb|EET04335.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1710a]
          Length = 373

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 17/237 (7%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-- 114
           ++D +  +    +      P AS+TK+MT  ++ +        L+ +I V+     Q+  
Sbjct: 126 MVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVLDS----NAPLDERIEVTDDDRDQDKF 181

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+L +   +  + +  +   +  S N  + A   +  G  + F   M+ KA+ +GM +
Sbjct: 182 TGSRLAI--GSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVD 239

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T ++N +GL  K+ +++ARD A +     + +P   +Y +  K+      R     + N 
Sbjct: 240 TYFENPTGLS-KHNVSSARDLAKMVEAAYQ-YPLIRQYSTDLKYDVDTGLRTLYYHSTNV 297

Query: 230 LLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL     NI   KTGY + SG  +V         +V V++           A  L T
Sbjct: 298 LLRDNAWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFFDAARLRT 354


>gi|227509182|ref|ZP_03939231.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227525051|ref|ZP_03955100.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus hilgardii ATCC
           8290]
 gi|227087763|gb|EEI23075.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus hilgardii ATCC
           8290]
 gi|227191328|gb|EEI71395.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 408

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 65/270 (24%), Positives = 117/270 (43%), Gaps = 33/270 (12%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-- 107
           K    ++ +DVN N +   K    PR  AS++K+MTLY++ + + +      +++  S  
Sbjct: 139 KYAKGAVALDVNTNGVVWSKNANTPRPIASVSKLMTLYLVQQKISNGGGTWTSKVNTSNA 198

Query: 108 --KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS-----EKKFAI 160
             K     +    +   K  +T     LA +  S+N+ + A G++++G       KKF  
Sbjct: 199 GLKKLGKDSTFGGFKFTKNSYTVRDLYLAALIESSNNAAIALGQWVAGGSTPTYNKKFIS 258

Query: 161 LMSNKAKKIGMQNTIYKNASGLH-------------DKNQITTARDQAILGILLRKNFPQ 207
           +M+ +AK   + NT + +ASG+                  + +A D A +   L  ++  
Sbjct: 259 MMNAQAKSWNLSNTSFVSASGMEQNSLKPFGYSIGGANANMVSAADVAQIARHLITDYND 318

Query: 208 YYKYFSIRKFRYRNRIITNHNKLL--NKMH----NIDGIKTGYTRNSGFNIVTSLRYKDD 261
             K  SI       + + N+N LL   K +    N+DG+KTGYT  +G+  V + R    
Sbjct: 319 VLKDASIGSMSLDGQKLYNYNNLLPGRKYYQKSLNVDGLKTGYTDPAGYCFVGTGRKSGH 378

Query: 262 -PIVAVVMGMPTSQERDQKALELITSFLEK 290
             I+ VV+     +    +   L+     K
Sbjct: 379 DRIITVVL---HDENEFTETRSLMNYVYNK 405


>gi|167569264|ref|ZP_02362138.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           oklahomensis C6786]
          Length = 379

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 98/238 (41%), Gaps = 17/238 (7%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-- 114
           V+D     +   K      P AS+TK+MT  +  +     +  L+  + VS         
Sbjct: 144 VVDERTGTVLIEKNANRVVPIASVTKLMTSMVALD----TRAPLSRPLRVSAQDRDYEKL 199

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+  LK  +  +    +   +  S N  + A     +G    F   M+ KA+ +GM++
Sbjct: 200 TGSR--LKVGSVLSRRDMLHIALMSSENRAAAALSRDYAGGRPAFVAAMNRKARTLGMKH 257

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-IRKFRYRNRII---TNHNK 229
           T + NA+GL     ++TA D + L     + +P+   + +   K  +  R      N + 
Sbjct: 258 THFVNATGLS-PRNVSTAHDLSRLVAAASR-YPRIKTFSTDTSKTVFPGRGQLRYVNSDA 315

Query: 230 LLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L+     NI   KTG+   +G  +V     +  P+  V++G P S +    A+++   
Sbjct: 316 LVRAGDSNIMLQKTGFINEAGHCVVFRYAVRGRPVDIVLLGAPGSSDHIADAMKIRRW 373


>gi|152981425|ref|YP_001352421.1| D-alanyl-D-alanine-endopeptidase [Janthinobacterium sp. Marseille]
 gi|151281502|gb|ABR89912.1| D-alanyl-D-alanine-endopeptidase [Janthinobacterium sp. Marseille]
          Length = 436

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 60/255 (23%), Positives = 105/255 (41%), Gaps = 13/255 (5%)

Query: 39  IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKK 97
           I  ++M  +  A     ++V+D + + +   K        AS+TK+MT  ++ E  Q   
Sbjct: 170 IAGLNMTRDSLALASNVALVLDQSTSAVLFEKNANVTLPIASITKLMTGLVVVEAQQD-- 227

Query: 98  LHLNTQIPVSKTAATQNP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
             +N  + V++    +   S   L+  +  +    +   +  S N  ++A G    G  +
Sbjct: 228 --MNEILEVTEEDIDREKNSSSRLRVGSQLSRANMLHIALMSSENRAASALGRHYPGGIR 285

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F   M+ KA+ +GM  T Y +++GL   N + +A D A L I    N     +Y +  K
Sbjct: 286 AFVAAMNAKARSLGMNGTHYVDSTGLS-SNNVASAADLAKLVIAAS-NHSILRQYSTDTK 343

Query: 217 F--RYRNRIIT--NHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           +      R +   N N+L+N      GI KTGY   +G  +V        PIV + +   
Sbjct: 344 YVVEPGGRALQYANSNRLVNNPDWEIGIQKTGYISEAGRCLVMQANINGRPIVMIFLDSK 403

Query: 272 TSQERDQKALELITS 286
               R   A  +   
Sbjct: 404 GKLSRLGDAARIRKW 418


>gi|145510915|ref|XP_001441385.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408635|emb|CAK73988.1| unnamed protein product [Paramecium tetraurelia]
          Length = 334

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 103/259 (39%), Gaps = 27/259 (10%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT------ 109
           IV++    Q       + R   ASLTK+MT Y+  + ++  KL+L   + VS        
Sbjct: 74  IVMNGIDGQHLTNFNSKKRVQVASLTKLMTCYVAIQLIRDLKLNLYQIVYVSYDVYILTF 133

Query: 110 -AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK----------- 157
            A   + +  +L      T    +  L+  S ND +    E +S   K            
Sbjct: 134 KAVQISGTSAFLHPYDRITLYDLLHGLMLPSGNDAANVIAENLSQCVKDPVSNIALHYRI 193

Query: 158 --FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             F  LM+  A ++ M +T + N  GL +    + A D AIL   +  + P   +  + +
Sbjct: 194 QPFISLMNQYALQLEMNDTQFYNPHGLSNDQSYSCAEDLAILCKQIIND-PMLMEIVNKK 252

Query: 216 KFRYRNR----IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           + +  N+       N N++L       G KTG+T  +G  + T  +     ++ +++   
Sbjct: 253 EHQATNKLINLTWKNTNRMLE-YEGYCGFKTGFTNKAGPCLATLFKNDQICLIIIILNCL 311

Query: 272 TSQERDQKALELITSFLEK 290
           + + R    ++L      K
Sbjct: 312 SKEVRWDDTIKLSNWAQRK 330


>gi|330808569|ref|YP_004353031.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
           carboxypeptidase) [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376677|gb|AEA68027.1| putative serine-type D-Ala-D-Ala carboxypeptidase
           (D-alanyl-D-alanine carboxypeptidase) [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 312

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 58/284 (20%), Positives = 119/284 (41%), Gaps = 27/284 (9%)

Query: 24  IQRNIQLMGKILFLSIIMIS---MASELHAKPK---------YSSIVIDVNKNQMTGFKQ 71
           ++  + ++   +  +   I+   +A E  A P+          S++++D+  +++     
Sbjct: 1   MKIRLSIISLFIAFTGSFITQNVVAQETIAAPRDTTKLQVASGSAMLLDLQTDKVVYSSN 60

Query: 72  DEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAATQNPSKLYLKEKTYFTTE 129
            +   P AS+TK+MT  I+ +     K +L+  I ++             +K  +  +  
Sbjct: 61  PDVVVPIASVTKLMTGLIVLDA----KQNLDEYISITIANTPEMKGVFSRVKLNSELSRR 116

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
             +L  +  S N  + +      G    F   M+ KAK +GM +T Y   +GL   N ++
Sbjct: 117 DVLLIALMSSENRAAASLAHHYPGGYAAFIAAMNAKAKALGMTSTHYVEPTGLSIHN-VS 175

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRII----TNHNKLLNK-MHNIDGIKT 242
           TARD   L I  RK +P   +  + ++    +R  +      N + L++K   +I   KT
Sbjct: 176 TARDLTKLLIAARK-YPLLSELSTTKEKTVTFRKPVYSLGFRNTDHLIHKANWDIQLTKT 234

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           G+T  +G  +V   +  + P+  V++           A  + + 
Sbjct: 235 GFTNEAGHCLVLVTKMGNRPMALVILDAFGKFTHFADASRIRSW 278


>gi|109240381|dbj|BAE96115.1| D, D-carboxypeptidase [Enterococcus raffinosus]
          Length = 355

 Score =  166 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 109/257 (42%), Gaps = 30/257 (11%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQ-SKKLHLNTQIPVSKTA 110
             ++IV++ + + +   K   +   PAS  KM+T   + EY    +++ +  +I +    
Sbjct: 100 AANAIVMNKDTDALLYQKNGTDRIAPASTAKMITALTVLEYCSPEEEMRVGAEIEM---- 155

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF----ISGS--------EKKF 158
              + S  +L +    T  Q ++AL+  S ND +          I+G          + F
Sbjct: 156 IHSDSSTAWLMKGDTLTVRQLLIALMLPSGNDAAYTLAVNTGKVIAGDNSLSNQQAIQIF 215

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS----- 213
              ++ KA+ IG+ ++ +    G   + Q TTA D AI+     ++ P   +  +     
Sbjct: 216 MDKVNEKARAIGVTDSNFVVPDGYDAEGQYTTAYDLAIIAKACLED-PIISEIVASNTSY 274

Query: 214 IRKFRYRNRIITNHNKLLNKM-----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            +    R     N N+LL+         + G+KTG +   G  +V++     +  + VVM
Sbjct: 275 EKWPNGREVTYNNSNELLDPNSPYYRPEVIGLKTGTSSLGGACVVSAAVIDGETYICVVM 334

Query: 269 GMPTSQERDQKALELIT 285
           G  T + R Q ++ ++ 
Sbjct: 335 GS-TKESRFQDSVAILD 350


>gi|297158599|gb|ADI08311.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces bingchenggensis
           BCW-1]
          Length = 297

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 98/277 (35%), Gaps = 28/277 (10%)

Query: 38  SIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYL 93
           +  +  + +   A P  ++    V++    +    K  + R    S TK+MT  ++    
Sbjct: 25  AGALAPVQAATVATPTITAKGGFVMNNGTGKALYTKAADTRLSTGSTTKIMTARVVL--- 81

Query: 94  QSKKLHLNTQIPV----SKTAATQN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
               L+L+ ++ V    S      N  S   L      T  Q +  L+  S  D + A  
Sbjct: 82  AQPNLNLDAKVTVQKAYSDYIVDNNWASSAKLIVGDKVTVRQLLYGLMLPSGCDAAYALA 141

Query: 149 EFISGS------EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
           +            K F   M++ AK +G+ NT + +  G+      +T RD   L     
Sbjct: 142 DKFGTGSTRAARVKSFIGKMNSTAKSLGLTNTHFDSFDGIGHGANYSTPRDLTKLASSAM 201

Query: 203 KNFPQYYKYFSIRKFR---------YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
           K +  +      +  +         YR    TN N LL       G+KTG    + + +V
Sbjct: 202 K-YSTFRTVVKTKSTKQKVTTKSGGYRYMDWTNTNPLLGTYSGAIGVKTGSGPEAKYCLV 260

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            +       ++  V+   +   R   A +L+     K
Sbjct: 261 FAATRNSKTVIGTVLASSSVDNRTADAKKLLNYGFAK 297


>gi|29830922|ref|NP_825556.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces avermitilis
           MA-4680]
 gi|29608035|dbj|BAC72091.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           avermitilis MA-4680]
          Length = 276

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 57/277 (20%), Positives = 100/277 (36%), Gaps = 26/277 (9%)

Query: 35  LFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIF 90
           +  +  + +  ++   KP  ++    V++    +    K  D      S TK+MT  ++ 
Sbjct: 1   MLSTGALTAAPAQAVTKPTITAKGGYVMNNGTGKSLYTKAADTKLSTGSTTKIMTAKVVL 60

Query: 91  EYLQSKKLHLNTQIPV----SKTAATQN-PSKLYLKEKTYFTTEQGILALITRSANDVST 145
                  L+L+ ++ V    S      N  S  +L      T  Q +  L+  S  D + 
Sbjct: 61  ---SQSNLNLDAKVTVQKAYSDYIVDNNYASSAHLIVGDKVTVRQLLYGLMLPSGCDAAY 117

Query: 146 AFGEFISGS------EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           A  +            K F   M++ AK +GM NT + +  G+   +  +T RD   L  
Sbjct: 118 ALADKFGSGSTRAARVKSFLSKMNSTAKSLGMTNTHFDSFDGIGHGSNYSTPRDLTKLAS 177

Query: 200 LLRK--NFPQYYKYFSIRKFR------YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
              K   F    K  S ++        YR     N N LL       G+KTG    + F 
Sbjct: 178 SAMKSSTFRTVVKTKSTKQKATTKSGGYRYYNWDNTNPLLGTYTGTIGVKTGSGPEAKFC 237

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +V +       ++  V+   +   R   A +L+    
Sbjct: 238 LVFAATRNGKTVIGTVLASTSVANRTADAKKLLNYGF 274


>gi|256397559|ref|YP_003119123.1| serine-type D-Ala-D-Ala carboxypeptidase [Catenulispora acidiphila
           DSM 44928]
 gi|256363785|gb|ACU77282.1| Serine-type D-Ala-D-Ala carboxypeptidase [Catenulispora acidiphila
           DSM 44928]
          Length = 410

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 59/300 (19%), Positives = 109/300 (36%), Gaps = 14/300 (4%)

Query: 40  IMISMASELHAKPKYSSIVI-DVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKK 97
           + +     +    K  S VI D     +   +    R  PAS  K++T   +   L    
Sbjct: 50  VAVPGTPPIPPDVKAGSFVIADEATGAILAERAPHDRLRPASTLKVLTALALMPRLDPAA 109

Query: 98  LHLNTQIPVSKTAATQNP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           +HL+    ++  A  +   S + +K    +       A+  RS ND          G+  
Sbjct: 110 VHLSVPGDIASLATAEPGASAVGIKPGLSYRVSDLWNAVFLRSGNDAIATLAAMAGGAGP 169

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
               LM   A+++   +T+  NA G     Q+++A D A++     ++ P +  Y S++K
Sbjct: 170 T-VDLMRQTAQRLHANDTVVVNADGYDADGQVSSAYDLALMARAGLQD-PGFRAYCSLQK 227

Query: 217 FRYR-----NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
            ++         I N N+LL K   + G+K GYT  +    V +       +V  V    
Sbjct: 228 AKFPSVNGTTFEIDNENRLLGKYPGMIGVKNGYTSLAHHTFVGAAERNGRTLVVSVFDAG 287

Query: 272 TSQERDQKALELITSFLEKKTLKHQ--QTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKID 329
           T     Q+  +L+              Q    D L  ++     +     +   +   +D
Sbjct: 288 TDI--YQQTAKLLDWGFAVPATAAGVDQLVPADPLQKSTAPDETLPPPDAQHAKKRDLLD 345


>gi|227512066|ref|ZP_03942115.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus buchneri ATCC
           11577]
 gi|227084718|gb|EEI20030.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus buchneri ATCC
           11577]
          Length = 408

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 65/270 (24%), Positives = 117/270 (43%), Gaps = 33/270 (12%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-- 107
           K    ++ +DVN N +   K    PR  AS++K+MTLY++ + + +      +++  S  
Sbjct: 139 KYAKGAVALDVNTNGVVWSKNANTPRPIASVSKLMTLYLVQQKISNGGGTWTSKVNTSNA 198

Query: 108 --KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS-----EKKFAI 160
             K     +    +   K  +T     LA +  S+N+ + A G++++G       KKF  
Sbjct: 199 GLKKLGKDSTFGGFKFTKNSYTVRDLYLAALIESSNNAAIALGQWVAGGSTPTYNKKFIS 258

Query: 161 LMSNKAKKIGMQNTIYKNASGLH-------------DKNQITTARDQAILGILLRKNFPQ 207
           +M+ +AK   + NT + +ASG+                  + +A D A +   L  ++  
Sbjct: 259 MMNAQAKSWNLSNTSFVSASGMEQNSLKPFGYSIGGANANMVSAADVAQIARHLITDYND 318

Query: 208 YYKYFSIRKFRYRNRIITNHNKLL--NKMH----NIDGIKTGYTRNSGFNIVTSLRYKDD 261
             K  SI       + + N+N LL   K +    N+DG+KTGYT  +G+  V + R    
Sbjct: 319 VLKDASIGSMSLDGQKLYNYNNLLLGRKYYQKSLNVDGLKTGYTDPAGYCFVGTGRKSGH 378

Query: 262 -PIVAVVMGMPTSQERDQKALELITSFLEK 290
             I+ VV+     +    +   L+     K
Sbjct: 379 DRIITVVL---HDENEFTETRSLMNYVYNK 405


>gi|238917030|ref|YP_002930547.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium eligens ATCC
           27750]
 gi|238872390|gb|ACR72100.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium eligens ATCC
           27750]
          Length = 415

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 66/311 (21%), Positives = 105/311 (33%), Gaps = 58/311 (18%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYS--SIVIDVNKNQMT-GFKQDEPRYPASLTK 82
           +N  ++  +L L +  I       A   YS  S++ID +  ++  G  +      AS TK
Sbjct: 5   KNFSIIILVLSLLVCCIFCPVTTQAAGLYSKYSVLIDSDSGRILSGSNETTAVSMASTTK 64

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +MTL I  E         N  +  S  AA+    +L       F       +L+  S ND
Sbjct: 65  IMTLIIALENCDK-----NFVVTTSAYAASMPDVQLNAVTGEQFIINDLYYSLMLESHND 119

Query: 143 VSTAFGEFIS----------GSEKKFAI--------------------------LMSNKA 166
            +    E  +           SE  F                            LM+ KA
Sbjct: 120 SAVIIAENAAYYLLCKNPSLRSETPFINNYNYDSSFLSEINHEQSEILVHIFTGLMNEKA 179

Query: 167 KKIGMQNTIYKNASGLHDKN----QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
             I + +T Y   +GL  ++      TTA D A        N   +            + 
Sbjct: 180 DDILLSDTYYITPNGLDAEDNYSFHHTTAYDLAKTMAYCINN-EDFLYITQTVSKTISDT 238

Query: 223 I------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM---PTS 273
                  + N N+LLN    I   KTG+T  +G+  V + + K+  +   ++     P  
Sbjct: 239 TGRYHYQLNNKNRLLNPNEGIISGKTGFTNKAGYCYVCAYKDKNRTLCIALLACGWPPNK 298

Query: 274 QERDQKALELI 284
             +   A  LI
Sbjct: 299 NYKWSDANYLI 309


>gi|29827852|ref|NP_822486.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces avermitilis
           MA-4680]
 gi|29604953|dbj|BAC69021.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           avermitilis MA-4680]
          Length = 388

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 87/262 (33%), Gaps = 23/262 (8%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           + A E+      S +V D     +        P  PAS  K +    +   L     H  
Sbjct: 64  AGAPEVPNVSALSWLVADAGTGDVLASHDAHRPLPPASTLKTLFALTMLPTLPGGIRH-- 121

Query: 102 TQIPVSKTAAT---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
               V++          S + + E   +        +   S ND          G +   
Sbjct: 122 ---TVAERELEGLGDGSSTVGVTEGQTYQVTDLWRGIFLHSGNDAVHVLASMNGGWDTT- 177

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           A  M  KA+ +G  +T   +  G     Q ++A D AI G     N   + +Y S     
Sbjct: 178 AHQMQAKARALGALDTHVVSPDGYDAPGQTSSAYDLAIFGRAGL-NREDFARYCSTVDAT 236

Query: 219 YRN----RIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           +        I N N+LL           + G+K GYT N+G  +V + R     +V  V+
Sbjct: 237 FPGNGGAYEIQNTNRLLTGADGIAPYPGLIGVKNGYTSNAGNTLVAAARRGGRTLVVTVL 296

Query: 269 GMPTSQ--ERDQKALELITSFL 288
              +       ++A  L+    
Sbjct: 297 NPQSGGGLAVYEEARSLLDWGF 318


>gi|254482177|ref|ZP_05095418.1| D-alanyl-D-alanine carboxypeptidase superfamily protein [marine
           gamma proteobacterium HTCC2148]
 gi|214037502|gb|EEB78168.1| D-alanyl-D-alanine carboxypeptidase superfamily protein [marine
           gamma proteobacterium HTCC2148]
          Length = 278

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 106/245 (43%), Gaps = 20/245 (8%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           S+IV+D     +   K  D  R  AS+TK+MT  ++ +      + L+ ++ ++K     
Sbjct: 40  SAIVLD-ESGNLIYGKDVDTVRPIASITKLMTAMVVLDSG----IGLDEKVTITKEDRDL 94

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S+  L+     +  + IL  +  S N  +TA G    G  + F   M+ KA+ +G
Sbjct: 95  VRLTGSR--LEYGATLSRREMILLALMSSENRAATALGRTYPGGMENFLAHMNRKARALG 152

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK---FRYRNR---II 224
           M N+ + + +GL  K  ++TA D A +     + +    +  + R+   + Y+ R     
Sbjct: 153 MTNSHFADPAGLK-KENVSTAADLAKMVTAA-EEYALITEATTTRRKDVYPYKGRGNLTY 210

Query: 225 TNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            N N+LL N   +I+  KTGY   +G  +V     + + +  V++           +  L
Sbjct: 211 GNTNRLLKNASWDIELSKTGYINEAGRCLVMQANIEGEDVSIVLLNSFGKLTPYGDSNRL 270

Query: 284 ITSFL 288
               L
Sbjct: 271 RKWML 275


>gi|300310973|ref|YP_003775065.1| D-alanyl-D-alanine-endopeptidase [Herbaspirillum seropedicae SmR1]
 gi|300073758|gb|ADJ63157.1| D-alanyl-D-alanine-endopeptidase (penicillin-binding) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 366

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 106/243 (43%), Gaps = 13/243 (5%)

Query: 56  SIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++VID   +Q+   K        AS+TK+MT  ++ E  Q+    +   + V+     + 
Sbjct: 115 ALVIDQANSQVLFEKNSGVALPIASVTKLMTALVVVEARQN----MEEVLTVTDDDVDRE 170

Query: 115 P-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   L+     + +  +   +  S N  ++A G    G    F   M+ KA+ +GM +
Sbjct: 171 KHSSSRLRVGATLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMMD 230

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY---RNRIITNH-NK 229
           T Y +++GL  +N + +ARD A L +    N+P   +Y +  K+      + +  N  N+
Sbjct: 231 TRYVDSTGLSSQN-VASARDLAKLVVAA-YNYPIIRQYSTDPKYMVEPSGHALQYNSSNR 288

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           L  NK  +I   KTG+   +G  +V   R +  PIV V +           A  +    +
Sbjct: 289 LTSNKEWDIGLQKTGFINEAGHCLVMYTRIEGRPIVMVFLDSKGRLSHVGDAARMRKWLV 348

Query: 289 EKK 291
           + +
Sbjct: 349 DDQ 351


>gi|317057306|ref|YP_004105773.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus
           albus 7]
 gi|315449575|gb|ADU23139.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus
           albus 7]
          Length = 483

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 113/288 (39%), Gaps = 37/288 (12%)

Query: 24  IQRNIQLMGKILFLSIIMISMAS-----------ELHAKPKYSSI--------VIDVNKN 64
           +++ ++++  +L  ++I   M S            + A  + S +        +++++  
Sbjct: 1   MKKKLRVIAALLCAALIFADMGSFTASALSFVPTTVDADGERSEVKLYSDCVYMVNMDSG 60

Query: 65  QMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHL-NTQIPVSKTAATQ----NPSKL 118
           ++      E    PASLTK+MT  ++ + L   +  L N  +     A  +      +  
Sbjct: 61  EVVVDINSEKEVPPASLTKLMTAVVLLDELGGDESTLRNKMMSAGTEAFDELYDTGAATA 120

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            ++     +    + AL+  SA + +      +  +   F  +M+ K  ++G+++T + N
Sbjct: 121 DIQPNESVSAYDLLAALLIPSACEAANIIAINVGENISGFVDMMNAKVSELGLKHTHFSN 180

Query: 179 ASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-------RNRIITNHNKLL 231
           A GL  +   +TA+D + +       +P + +      F             I + + ++
Sbjct: 181 AHGLFTQQNYSTAKDISTICRYALDKYPVFEELVGSPSFTMAPTDFHPEGTYIASTDYMI 240

Query: 232 NK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
           N+          GIKTG T ++G    +         + V MG P  +
Sbjct: 241 NEYTKYYYAKCRGIKTGTTESAGRCFASYAVSDGVRYLVVTMGAPMEK 288


>gi|303256971|ref|ZP_07342985.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderiales
           bacterium 1_1_47]
 gi|302860462|gb|EFL83539.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderiales
           bacterium 1_1_47]
          Length = 377

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 112/247 (45%), Gaps = 13/247 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + +  D++ NQ+   K  D+P   AS+TK+MT  +I E      ++L+ +  V++   
Sbjct: 134 STAVLAYDMDTNQVLYEKNADQPLPIASITKLMTALVIVESG----VNLDDKFTVTREDF 189

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + +   L+     +  Q +   +  S N  +          + +F   M+ KA  +GM
Sbjct: 190 VPSSAHSKLRMGMEISRRQALHLALMSSDNRAAHFLARTYPTGKAQFIKEMNIKAALLGM 249

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNH 227
           +++++ ++ GL++ +  ++A D + L I     +    +  +  +  +    R  I +  
Sbjct: 250 KDSVFYDSIGLNN-DNRSSAVDLSYL-ITGASEYALIRELSTTPEASFRIGKREVISSTT 307

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           N+L+ ++  +I+  KTG T  +G+ +V         +  + +  P    R   A +L  S
Sbjct: 308 NRLIKDEDWDIELQKTGLTTAAGYCMVMQAHVDGKNVAFIFLDSPNKYARANDAEKL-RS 366

Query: 287 FLEKKTL 293
           +L ++++
Sbjct: 367 YLSRESV 373


>gi|295398159|ref|ZP_06808208.1| conserved hypothetical protein [Aerococcus viridans ATCC 11563]
 gi|294973678|gb|EFG49456.1| conserved hypothetical protein [Aerococcus viridans ATCC 11563]
          Length = 469

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 59/267 (22%), Positives = 115/267 (43%), Gaps = 31/267 (11%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           +++VID    Q+   +     +  ASLTK++ L+++++ + +  L  ++++PVS+     
Sbjct: 66  AAMVIDSESGQILYDQNGADLHGIASLTKLIALFVVYDEIAAGNLSFDSKVPVSEAVSEL 125

Query: 111 -ATQNPSKLYLKEK-TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                 S + L+E   Y+T +  I A +  S N    A  E+I+GSE+ F  +M +K  +
Sbjct: 126 SVAAGLSNVPLEESTDYYTVDALIDAAVIGSGNAAVVALAEYIAGSEQSFVEMMDDKLTE 185

Query: 169 IGMQNTIYKNASGLH----------------DKNQITTARDQAILGILLRKNFPQYYKYF 212
           +G+++     ASGL                 D+  +  ARD   +   +   +P   +  
Sbjct: 186 LGIKDFELYTASGLAGSWLTTTDGSASPYSIDQENMMQARDILFVAREIVNEYPDVLERS 245

Query: 213 SIRKFRY-----RNRIITNHNKLLNKM----HNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
           ++    +         + + N  L        ++ G+KTG    +G  I+   +     I
Sbjct: 246 NVTSKEFQVSDTETYTLESTNLFLPGNAYERDDVSGLKTGTESIAGRCIIIMSQIDGRDI 305

Query: 264 VAVVMGMPTSQERDQKALELITSFLEK 290
           + V +G  T  ER      L+T+  E 
Sbjct: 306 MLVTLGAETEDERYVNTGTLLTALQEN 332


>gi|330875216|gb|EGH09365.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 281

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 104/245 (42%), Gaps = 21/245 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  +++      +   P AS+TK+MT  I+ +     K  ++  IPV+    +Q
Sbjct: 14  SAMVVDLQTDKVLYSSNPDVIVPIASVTKLMTAMIVLDA----KQSMDEVIPVN---ISQ 66

Query: 114 NPSKLYL----KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +    K  +       +L  +  S N  + +      G    F + M+ KAK +
Sbjct: 67  TPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 126

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI--RKFRYRNRII--- 224
           GM++T Y   +GL   N ++TARD   L +  RK +P   +  +   +   +R       
Sbjct: 127 GMKHTAYVEPTGLSVYN-VSTARDLTKLVMAARK-YPLLSELSTTEQKTVTFRKPTYILG 184

Query: 225 -TNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            +N + L+ K   +I   KTG+T  +G  +V      + P+  V++           A  
Sbjct: 185 FSNTDHLVRKENWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYTHFADASR 244

Query: 283 LITSF 287
           +    
Sbjct: 245 IRKWM 249


>gi|7766853|pdb|1ES4|A Chain A, C98n Mutant Of Streptomyces K15 Dd-Transpeptidase
          Length = 262

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 94/262 (35%), Gaps = 28/262 (10%)

Query: 51  KPKYSSI---VIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
           KP  +++    ++         K  D  R   S TK+MT  ++        L+L+ ++ +
Sbjct: 3   KPTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVL---AQSNLNLDAKVTI 59

Query: 107 ----SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS------EK 156
               S      N S+ +L      T  Q +  L+  S ND + A  +            K
Sbjct: 60  QKAYSDYVVANNASQAHLIVGDKVTVRQLLYGLMLPSGNDAAYALADKYGSGSTRAARVK 119

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F   M+  A  +G+ NT + +  G+ +    +T RD   +     KN   +      + 
Sbjct: 120 SFIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLTKIASSAMKNS-TFRTVVKTKA 178

Query: 217 FRYRNRI----------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           +  +               N N LL+      G+KTG    + + +V +       ++  
Sbjct: 179 YTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGT 238

Query: 267 VMGMPTSQERDQKALELITSFL 288
           V+   +   R+  A +++    
Sbjct: 239 VLASTSIPARESDATKIMNYGF 260


>gi|222159812|gb|ACM47285.1| D,D-carboxypeptidase VanYD [Enterococcus faecium]
          Length = 363

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 107/257 (41%), Gaps = 30/257 (11%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQ-SKKLHLNTQIPVSKTA 110
             ++IV++ + + +   K   +   PAS  KM+T   + EY    +++ +  +I +    
Sbjct: 108 AANAIVVNKDTDAVLYQKNGTDRIAPASTAKMITALTVLEYCSPEEEMRVGAEIEM---- 163

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK------------F 158
              + S  +L +    T  Q ++AL+  S ND +         +               F
Sbjct: 164 IHSDSSTAWLMKGDTLTVRQLLIALMLPSGNDAAYTLAVNTGKTIAGDNSLSNQQAIKIF 223

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS----- 213
              ++ KA+++G+ ++ +    G   + Q TTA D AI+     +N P   +  +     
Sbjct: 224 MDKVNEKARELGVTDSNFVVPDGYDAEGQYTTAYDLAIIAKACLEN-PIISEIVASNTSY 282

Query: 214 IRKFRYRNRIITNHNKLLNKM-----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            +    R     N N+LL+         + G+KTG +   G  +V++     +  + V M
Sbjct: 283 EKWPNGREVTYNNSNELLDPNSPYYRPEVIGLKTGTSSLGGACVVSAAVIDGETYICVAM 342

Query: 269 GMPTSQERDQKALELIT 285
           G  T + R Q +++++ 
Sbjct: 343 GS-TKESRFQDSVDILD 358


>gi|254468773|ref|ZP_05082179.1| penicillin-binding protein 7 [beta proteobacterium KB13]
 gi|207087583|gb|EDZ64866.1| penicillin-binding protein 7 [beta proteobacterium KB13]
          Length = 285

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 109/236 (46%), Gaps = 15/236 (6%)

Query: 56  SIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ- 113
           +I+ D +   +   K  +E    ASLTK+MT  ++ +      L LN ++ ++K    + 
Sbjct: 39  AIIYDADSGDIIFQKKANEKSAIASLTKLMTAMVLIDS----NLDLNEKVKITKKDQDRI 94

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +K  L   +  T ++ +   +  S N  ++A      G +K F   M+ KAK++GM +
Sbjct: 95  KGTKSRLWLGSELTRKELLSIALIASDNRAASALSNSYPGGKKAFVQAMNVKAKQLGMDD 154

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRII----TNH 227
           T + + +GL DKN I+TA D   +     + +P   +  +   +    +N+ I     N 
Sbjct: 155 TSFADPTGL-DKNNISTAIDLVKMTQAA-QQYPIIRELSTSSYYEAYIKNKKIRLNYNNT 212

Query: 228 NKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           N L+ + + +ID  KTGY R +G  ++   +  D PI+ V +       R   A  
Sbjct: 213 NLLVRQGLWDIDISKTGYIREAGKCLIMQTKVMDKPIIMVFLKSYGKYTRTADAKR 268


>gi|167725751|ref|ZP_02408987.1| family S11 unassigned peptidase [Burkholderia pseudomallei DM98]
          Length = 281

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 17/237 (7%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-- 114
           ++D +  +    +      P AS+TK+MT  ++ +        L+ +I V+     Q+  
Sbjct: 34  MVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVLDS----NAPLDERIEVTDDDRDQDKF 89

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+L +   +  + +  +   +  S N  + A   +  G  + F   M+ KA+ +GM +
Sbjct: 90  TGSRLAI--GSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAMNRKARSLGMVD 147

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T ++N +GL  K+ +++ARD A +     + +P   +Y +  K+      R     + N 
Sbjct: 148 TYFENPTGLS-KHNVSSARDLAKMVEAAYQ-YPLIRQYSTDLKYDVDTGLRTLYYHSTNV 205

Query: 230 LLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL     NI   KTGY + SG  +V         +V V++           A  L T
Sbjct: 206 LLRDNAWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFFDAARLRT 262


>gi|291459228|ref|ZP_06598618.1| serine-type D-Ala-D-Ala carboxypeptidase [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291418482|gb|EFE92201.1| serine-type D-Ala-D-Ala carboxypeptidase [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 334

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 100/255 (39%), Gaps = 28/255 (10%)

Query: 55  SSIVIDVNKNQ---MTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           + ++ D +  +      ++    R Y AS+TK+MT  +  E +Q     LN +  V++ +
Sbjct: 82  AFLLADYSTKEKPEPLAYRNPYARTYQASITKVMTALVCLETVQD----LNQEFTVTQRS 137

Query: 111 A--TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
               +  S   LK       E  +  ++  S ND + A  E  +GS + F   M+  A +
Sbjct: 138 MIRDEGSSSALLKVGDRLRIEDLLYGMLLPSGNDAAVAVAEASAGSVEAFVKKMNETALR 197

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN-- 226
           +G+  T + N +GL   +  TTA D  +L     K + ++ K      +    R   N  
Sbjct: 198 LGLTGTHFVNPNGLPSDDHYTTAYDIYLLLAEAMK-YEEFRKIVGSTSYTVNYRDKNNVP 256

Query: 227 -------HNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRY--KDDPIVAVVMGMP 271
                   N+ +           + G KTG T+ +G+ +             ++VVM   
Sbjct: 257 KTQIWKGSNQFMTGERETPEDLKVLGGKTGTTKKAGYCLTMDTERISTQKEYISVVMKDD 316

Query: 272 TSQERDQKALELITS 286
           +  E      +L+  
Sbjct: 317 SKDELYSDMTKLLKR 331


>gi|330999158|ref|ZP_08322877.1| serine-type D-Ala-D-Ala carboxypeptidase [Parasutterella
           excrementihominis YIT 11859]
 gi|329575358|gb|EGG56902.1| serine-type D-Ala-D-Ala carboxypeptidase [Parasutterella
           excrementihominis YIT 11859]
          Length = 388

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 112/247 (45%), Gaps = 13/247 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + +  D++ NQ+   K  D+P   AS+TK+MT  +I E      ++L+ +  V++   
Sbjct: 145 STAVLAYDMDTNQVLYEKNADQPLPIASITKLMTALVIVESG----VNLDDKFTVTREDF 200

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + +   L+     +  Q +   +  S N  +          + +F   M+ KA  +GM
Sbjct: 201 VPSSAHSKLRMGMEISRRQALHLALMSSDNRAAHFLARTYPTGKAQFIKEMNIKAALLGM 260

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNH 227
           +++++ ++ GL++ +  ++A D + L I     +    +  +  +  +    R  I +  
Sbjct: 261 KDSVFYDSIGLNN-DNRSSAVDLSYL-ITGASEYALIRELSTTPEASFRIGKREVISSTT 318

Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           N+L+ ++  +I+  KTG T  +G+ +V         +  + +  P    R   A +L  S
Sbjct: 319 NRLIKDEDWDIELQKTGLTTAAGYCMVMQAHVDGKNVAFIFLDSPNKYARANDAEKL-RS 377

Query: 287 FLEKKTL 293
           +L ++++
Sbjct: 378 YLSRESV 384


>gi|301384572|ref|ZP_07232990.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. tomato
           Max13]
          Length = 313

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 104/245 (42%), Gaps = 21/245 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  +++      +   P AS+TK+MT  I+ +     K  ++  IPV+    +Q
Sbjct: 46  SAMVVDLQTDKVLYSSNPDVIVPIASVTKLMTAMIVLDA----KQSMDEVIPVN---ISQ 98

Query: 114 NPSKLYL----KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +    K  +       +L  +  S N  + +      G    F + M+ KAK +
Sbjct: 99  TPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 158

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI--RKFRYRNRII--- 224
           GM++T Y   +GL   N ++TARD   L +  RK +P   +  +   +   +R       
Sbjct: 159 GMKHTAYVEPTGLSVYN-VSTARDLTKLVMAARK-YPLLSELSTTEQKTVTFRKPTYILG 216

Query: 225 -TNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            +N + L+ K   +I   KTG+T  +G  +V      + P+  V++           A  
Sbjct: 217 FSNTDHLVRKENWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYTHFADASR 276

Query: 283 LITSF 287
           +    
Sbjct: 277 IRKWM 281


>gi|325678286|ref|ZP_08157914.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus albus 8]
 gi|324110049|gb|EGC04237.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus albus 8]
          Length = 401

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 69/300 (23%), Positives = 124/300 (41%), Gaps = 24/300 (8%)

Query: 56  SIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++++D + N++    K D+  YPASLTK+MTL +  E +                   +N
Sbjct: 100 AVLMDADSNELIAGLKYDKKIYPASLTKLMTLLVAVENIDDMNAKYKFTDKDIDPLIDEN 159

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S+         T E  + A I  S  D +      I+GSEK F  LM++KA ++G+ +T
Sbjct: 160 ASRAGYVAGDEATMEDLLYAAILPSGADGTLGLANAIAGSEKDFVKLMNDKAAELGLTDT 219

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKN-------FPQYYKYFSIRKFRYRNRIITN- 226
            + NASGLHDK   TTA+D A++     +N       F + +     ++F      + + 
Sbjct: 220 NFVNASGLHDKQHYTTAQDMAVITRACLQNDVCRKVMFAEKWTTKPTQEFE-DGIELDSI 278

Query: 227 -HNKLLNKMHNID----------GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
            H++      + D          G KTG+T  S F + T ++Y     + +         
Sbjct: 279 LHSRFGGYFIDADQDGAEDAELEGGKTGFTDESMFCLSTVVKYNGKEYICITTKSDGDLI 338

Query: 276 RDQKALELITSFLEKKT---LKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
             + A+ +  ++L       +   ++   +N   +    + +I     T S  K    + 
Sbjct: 339 ATEDAIMVYENYLPGAVGTPVTADESSEAENSDESQADDNNVITITDDTASSSKPAADEN 398


>gi|330967602|gb|EGH67862.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 311

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 104/245 (42%), Gaps = 21/245 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  +++      +   P AS+TK+MT  I+ +     K  ++  IPV+    +Q
Sbjct: 44  SAMVVDLQTDKVLYSSNPDVIVPIASVTKLMTAMIVLDA----KQSMDEVIPVN---ISQ 96

Query: 114 NPSKLYL----KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +    K  +       +L  +  S N  + +      G    F + M+ KAK +
Sbjct: 97  TPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 156

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI--RKFRYRNRII--- 224
           GM++T Y   +GL   N ++TARD   L +  RK +P   +  +   +   +R       
Sbjct: 157 GMKHTAYVEPTGLSVYN-VSTARDLTKLVMAARK-YPLLSELSTTEQKTVTFRKPTYILG 214

Query: 225 -TNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            +N + L+ K   +I   KTG+T  +G  +V      + P+  V++           A  
Sbjct: 215 FSNTDHLVRKENWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYTHFADASR 274

Query: 283 LITSF 287
           +    
Sbjct: 275 IRKWM 279


>gi|28869869|ref|NP_792488.1| penicillin-binding protein 7 [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213969996|ref|ZP_03398129.1| penicillin-binding protein 7 [Pseudomonas syringae pv. tomato T1]
 gi|302060754|ref|ZP_07252295.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. tomato
           K40]
 gi|302132778|ref|ZP_07258768.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28853114|gb|AAO56183.1| penicillin-binding protein 7 [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213925321|gb|EEB58883.1| penicillin-binding protein 7 [Pseudomonas syringae pv. tomato T1]
          Length = 311

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 104/245 (42%), Gaps = 21/245 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  +++      +   P AS+TK+MT  I+ +     K  ++  IPV+    +Q
Sbjct: 44  SAMVVDLQTDKVLYSSNPDVIVPIASVTKLMTAMIVLDA----KQSMDEVIPVN---ISQ 96

Query: 114 NPSKLYL----KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +    K  +       +L  +  S N  + +      G    F + M+ KAK +
Sbjct: 97  TPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 156

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI--RKFRYRNRII--- 224
           GM++T Y   +GL   N ++TARD   L +  RK +P   +  +   +   +R       
Sbjct: 157 GMKHTAYVEPTGLSVYN-VSTARDLTKLVMAARK-YPLLSELSTTEQKTVTFRKPTYILG 214

Query: 225 -TNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            +N + L+ K   +I   KTG+T  +G  +V      + P+  V++           A  
Sbjct: 215 FSNTDHLVRKENWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYTHFADASR 274

Query: 283 LITSF 287
           +    
Sbjct: 275 IRKWM 279


>gi|145505585|ref|XP_001438759.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124405931|emb|CAK71362.1| unnamed protein product [Paramecium tetraurelia]
          Length = 360

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 107/258 (41%), Gaps = 22/258 (8%)

Query: 53  KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S  + + N  + +TG+ Q++ R  AS+TK++T  I  E     ++ L   I  +K A 
Sbjct: 109 AQSWAIFNGNTGEYITGYNQNKCRQIASITKIVTCII--ENAFLFQIKL---INQTKQAQ 163

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF---ISGSEKKFAILMSNKAKK 168
             + +   L +         +  L+  S ND +          S     F   M+   + 
Sbjct: 164 KISGTSAGLLKGDSIFLRDLLYGLMLPSGNDAAVTLSYNFQLYSLENDHFLKEMNRFVQA 223

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF----------R 218
           +G+ NT + N  GL ++N  +TA D         +N  Q+ K    + +           
Sbjct: 224 LGLSNTQFSNVHGLCNENNFSTAYDVGKFTYESLQN-EQFQKIVRTQSYFCETPNQLQNT 282

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
            R     N NKLL +     G+KTG T+ +G ++V   +   +  + V++   +S+ R  
Sbjct: 283 SRELYWENTNKLLQQ--GFKGVKTGITKEAGPSVVEYFQDSTNSYIIVLLNCSSSENRWT 340

Query: 279 KALELITSFLEKKTLKHQ 296
            AL L+    ++ TL  Q
Sbjct: 341 DALRLLQWIQKQDTLIKQ 358


>gi|304312179|ref|YP_003811777.1| Probable D-alanyl-D-alanine carboxypeptidase [gamma proteobacterium
           HdN1]
 gi|301797912|emb|CBL46134.1| Probable D-alanyl-D-alanine carboxypeptidase [gamma proteobacterium
           HdN1]
          Length = 394

 Score =  165 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 99/237 (41%), Gaps = 15/237 (6%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++V+D +  ++   K  +E    AS+TK+MT  ++ +  Q     ++  + ++      
Sbjct: 140 AALVMDADTGEILYGKNSNETVPIASITKLMTAIVVLDAGQ----SMHEILTITNDDVDT 195

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S   L+  T     + +   +  S N  ++A      G  +     M+ KA ++GM 
Sbjct: 196 LRHSSSRLRVGTRLPRGEMMHLALMSSENRAASALIRNYPGGLQAGLRAMNAKAAELGMT 255

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR-----YRNRI-ITN 226
           ++ + + +GL +     +  D A +       +P+ + Y +          YRN++   N
Sbjct: 256 SSHFYDGTGL-NGGNRASLFDLAKMVKAA-NTYPEIHDYSTSSSAMVSVAGYRNQLRYVN 313

Query: 227 HNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            N L+N    +I   KTGY R +G  +V   R      V V+M    +Q R   A  
Sbjct: 314 TNPLVNNSGWDIGVTKTGYIREAGKCLVMQARIGATNTVLVLMDSWGAQTRVGDANR 370


>gi|116334394|ref|YP_795921.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367]
 gi|116099741|gb|ABJ64890.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367]
          Length = 392

 Score =  165 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 114/271 (42%), Gaps = 29/271 (10%)

Query: 51  KPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-K 108
           K   ++I +D    +    K  +  R  AS++K+MTLY++ + +       N  +  S K
Sbjct: 125 KYAKNAIALDYTTGKAVWSKSANTVRPIASVSKLMTLYLVLKKVDGSATKWNQVVDTSSK 184

Query: 109 TAATQNPSKL----YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
                  S        K    +T ++   A +  S+N+ + A G++++GS  KF   M+ 
Sbjct: 185 GLIAMGKSSACGGFLFKTGHKYTVKELYDAALLDSSNNAAIALGKWVAGSNAKFIKQMNA 244

Query: 165 KAKKIGMQNTIYKNASGLHDKN-------------QITTARDQAILGILLRKNFPQYYKY 211
           +AK   +    + +ASGL + +              + +A+D A++   L K++P+    
Sbjct: 245 QAKSWNLGKASFVSASGLENDDLKAFGYAYGSKNANMVSAKDVALIARHLIKDYPRILTD 304

Query: 212 FSIRKFRYRNRIITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKD-DPIV 264
            ++       ++  N+N LL           +DG+KTGYT  +G+  V + +      ++
Sbjct: 305 GAVGSKNVDGQLCYNYNNLLKGRKYYQSSLKVDGLKTGYTPLAGYCFVGTGQKSGKHRVI 364

Query: 265 AVVMGMPTSQERDQKALELITSFLEKKTLKH 295
            VV+          +   L+       ++ +
Sbjct: 365 TVVLHDINE---FTETRSLMNHAYTYSSMNN 392


>gi|160880498|ref|YP_001559466.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           phytofermentans ISDg]
 gi|160429164|gb|ABX42727.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           phytofermentans ISDg]
          Length = 342

 Score =  165 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 60/259 (23%), Positives = 100/259 (38%), Gaps = 26/259 (10%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E  A P  ++ +ID   +Q+   K   +  YPAS TK++T  I+ +Y       L   + 
Sbjct: 88  EDPAIPAIAAFMIDDTDHQVLFAKNVYDRIYPASTTKLLTALIVLKYGD-----LKDSVT 142

Query: 106 VSKTAATQN--PSKL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           + K  A      +KL   K     + E  +  L+  S ND + A  E + GS ++F   M
Sbjct: 143 IEKDNAGVTTYGAKLCNFKAGDVVSMETLLNCLLVYSGNDAAVAIAEHMYGSVEEFVKKM 202

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI-------- 214
           + +A  IG  NT + N  GLHD N  TTA D  ++     K + ++              
Sbjct: 203 NEEAANIGATNTHFTNPHGLHDPNHYTTAYDMYLIFKECLK-YEKFVPIIKQINYEASIT 261

Query: 215 -RKFRYRNRIITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRY-KDDPIVAV 266
            +  + R +     N  L           + G KTG T ++G  ++           ++ 
Sbjct: 262 DKDGKLRRKSYETTNMFLLGTKETPEGVTVFGGKTGSTGDAGDCLILYSNSADGKAYISA 321

Query: 267 VMGMPTSQERDQKALELIT 285
           V           +   L+ 
Sbjct: 322 VFKAAGKTSLYNQHAHLLE 340


>gi|319779426|ref|YP_004130339.1| Murein-DD-endopeptidase [Taylorella equigenitalis MCE9]
 gi|317109450|gb|ADU92196.1| Murein-DD-endopeptidase [Taylorella equigenitalis MCE9]
          Length = 389

 Score =  165 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 55/235 (23%), Positives = 101/235 (42%), Gaps = 14/235 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ- 113
           ++V+ ++  Q+   K      P AS++K+MT Y++ +  Q     L+  I +S+      
Sbjct: 148 ALVMSLDDRQIQYQKNINVVQPIASISKLMTAYVVIKSGQP----LDEIITISEEDVDHL 203

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +   L   T  T ++ +L  +  S N  + A G    G  + F   M+  A+ +GM  
Sbjct: 204 KGTGSRLTIGTQLTRKEALLLALMSSENRAANALGRHYPGGLEAFVKEMNATARSLGMTR 263

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY-----FSIRKFRYRNRIITNHN 228
           T Y   +GL     +++A+D A L   + K  P  ++      +S+     + +   N N
Sbjct: 264 TRYVEPTGLS-PMNVSSAQDLATLLAAVYKE-PLIHQLSTSDGYSVTTNGGKVQDYKNSN 321

Query: 229 KLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
           +L+     +I   KTGY + +G  IV   + K   +  V+M       R   A+ 
Sbjct: 322 RLIRNNEWDIHISKTGYIKEAGRCIVMITKIKGKDMAVVLMNAKGGTTRFSDAIR 376


>gi|218678836|ref|ZP_03526733.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli CIAT 894]
          Length = 168

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 59/162 (36%), Positives = 95/162 (58%), Gaps = 4/162 (2%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLY 87
           +L+   L  +++M +  +    +   +S VID    Q+     QDE  YPASLTKMMTLY
Sbjct: 7   RLLATALSSAMVMGAFTA---VQAGQASFVIDAQSGQILEASNQDELNYPASLTKMMTLY 63

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + FE L   +L  + ++ +S+ A ++ P KL +      T  + + +++  SAND + A 
Sbjct: 64  LAFEALHEGRLKWDQKLTMSENAESKEPFKLAIGAGRQVTLREAVESIVVLSANDSAVAI 123

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
            E + GSE+ FA  M++KA+++GM NT++KN SGL D  Q+T
Sbjct: 124 AEQLGGSEQAFAKTMTDKARQLGMTNTVFKNPSGLPDPEQVT 165


>gi|171463757|ref|YP_001797870.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171193295|gb|ACB44256.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 338

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 101/238 (42%), Gaps = 13/238 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++V++ +  ++   K        AS+TK+MT  ++ +     KL L+  I ++       
Sbjct: 94  AMVVNQDTKEVYFEKNPSVSLPIASITKLMTAMVVLDS----KLPLDEAIVINADDIHIY 149

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            +   L   T  T E+ +L  +  S N  +   G    G    F   M+ KAK++GM ++
Sbjct: 150 RTS-RLAGGTVLTREEALLLALMSSENRAAYTLGRNYPGGIPAFVDAMNRKAKELGMNHS 208

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNKL 230
            + + +GL  +N + TA D   +     + +    ++ +          R +   N N+L
Sbjct: 209 HFADPTGLMSEN-VATAEDLTRMLNAAYQ-YKMIREFSTWPDLTMVIAKRPQKFLNTNRL 266

Query: 231 LNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           +       G+ KTG+   +G  +V   R  + P++ V +    +Q R   A+ +   +
Sbjct: 267 VRSGDMNIGLQKTGFINAAGKCLVMQARVNNTPLLLVFLDSVGTQSRFADAVRVRDWY 324


>gi|237786122|ref|YP_002906827.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237759034|gb|ACR18284.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 474

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 94/242 (38%), Gaps = 15/242 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S ++ DV+   +   K    RY PAS+ K+    +  E +   +L L+  +  ++  A  
Sbjct: 165 SWLIYDVDSGDVIAAKDPHGRYRPASIFKV---LLAREAID--RLPLDRVLTATQEDANM 219

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   +     +T  Q +  L+ RS ND +      + G EKK    +  +A   G Q+
Sbjct: 220 EGSHAGIGPDGKYTVRQALQGLLMRSGNDCAHLLMRALGG-EKKVLADLQKRADGSGTQD 278

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN------RIITNH 227
           T   + SGL      T+A D A+L      N   + +  + +   +          I+N 
Sbjct: 279 TRVTSYSGLDAPGLQTSAYDLALLYREAFHN-KTFNEIVNTKLVDFPGYQDNPGFQISND 337

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-DQKALELITS 286
           N++L       G KTG+T ++              +  + +    +  +   +A  L+ +
Sbjct: 338 NEMLFTYEGAFGGKTGFTDDARHTYSGGAERNGRKLAVIELNATNAAGKGWDQATRLLDA 397

Query: 287 FL 288
             
Sbjct: 398 AW 399


>gi|154267921|gb|ABS72056.1| D,D carboxypeptidase [Ruminococcus gauvreauii]
          Length = 356

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 104/259 (40%), Gaps = 32/259 (12%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT- 109
              ++IV++ + N++   K+      PAS  KM+      +Y          ++ V    
Sbjct: 100 AAANAIVMNKDTNEVLYQKKSTAKIAPASTAKMIMALTALDYC-----SPEDEMKVGAEI 154

Query: 110 -AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF----ISGSE--------K 156
                + S  +L +    T  Q ++AL+  S ND +          I+G +        +
Sbjct: 155 EMIQSDSSTAWLMKGDTLTVRQLLIALMLPSGNDAAYTLAVNTGKKIAGDKSLTHQQAIE 214

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS--- 213
            F   ++ KA  +G  N+ +    G   + Q TTA D AI+      N P   +  +   
Sbjct: 215 VFMDKVNEKAVNLGATNSKFVAPDGYDAEGQYTTAYDLAIIAKACLDN-PIISEIVASYS 273

Query: 214 --IRKFRYRNRIITNHNKLLNKM-----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
              +    R    +N N+LL+         + G+KTG +   G  IV++     +  + V
Sbjct: 274 SYEKWPNGREVTYSNSNELLDPNSPYYRPEVIGLKTGTSSLGGACIVSAAVIDGETYICV 333

Query: 267 VMGMPTSQERDQKALELIT 285
           VMG  T + R Q +++++ 
Sbjct: 334 VMGS-TKESRFQDSVDILD 351


>gi|317508066|ref|ZP_07965751.1| D-alanyl-D-alanine carboxypeptidase [Segniliparus rugosus ATCC
           BAA-974]
 gi|316253634|gb|EFV13019.1| D-alanyl-D-alanine carboxypeptidase [Segniliparus rugosus ATCC
           BAA-974]
          Length = 399

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 96/265 (36%), Gaps = 14/265 (5%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEY 92
           +    ++  + +  L   P    +V D++  Q+        R+ PAS  K +    + + 
Sbjct: 71  LAACGVVQPAGSPALPEGPARGWLVADLDSGQVLAASDPHGRFRPASTIKTLLALAVLDE 130

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           L    +    Q+      A +     +++    +T  + +   +  S+N  + A    + 
Sbjct: 131 LDPNHV---VQLTDGDQTADEESQHPFIEPGGKYTVFELLEGALMVSSNGAANALARVLG 187

Query: 153 --GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--QITTARDQAILGILLRKNFPQY 208
             G  +     M++ A  +G ++T     SG+        ++  D A++     K    +
Sbjct: 188 AGGGVEAAVKKMNDLAGLLGAKDTRATTPSGVEAPGGPSTSSPYDLALIFRAAMKQDI-F 246

Query: 209 YKYFSIRKFRYRN----RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
            K  S +            + N N +L+    + G KTG+T +S    V +       +V
Sbjct: 247 RKIVSQKSITMHGDPDDFPLVNDNAMLDDYPGMLGGKTGFTEDSQKTFVAAAERDGRRLV 306

Query: 265 AVVM-GMPTSQERDQKALELITSFL 288
              M G+  +    ++A  L+    
Sbjct: 307 VTQMYGLNGATTFREQASALLDWGF 331


>gi|76810222|ref|YP_332685.1| murein-DD-endopeptidase [Burkholderia pseudomallei 1710b]
 gi|76579675|gb|ABA49150.1| murein-DD-endopeptidase [Burkholderia pseudomallei 1710b]
          Length = 452

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 105/264 (39%), Gaps = 28/264 (10%)

Query: 40  IMISMASELHAKPKYSSI-----------VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLY 87
           ++ +   +L A+  Y++            V+D     +   +      P AS+TK+MT  
Sbjct: 188 VVAAAKPQLLARCGYTAASRHLLRSRAIYVVDERTGTVLIERNANRVMPIASVTKLMTSM 247

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVS 144
           +  +     +  ++  + VS           S+  LK  +  +    +   +  S N  +
Sbjct: 248 VALD----TRAPMSRPLRVSAQDRDYEKFTGSR--LKVGSVLSRRDMLHIALMSSENRAA 301

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A      G    F   M+ KA+ +GM+ T + NA+GL     ++TARD + L     + 
Sbjct: 302 AALSRDYPGGRPAFVAAMNRKARTLGMKRTHFVNATGLS-PRNVSTARDLSRLVAAASR- 359

Query: 205 FPQYYKYFS-IRKFRYRNRII---TNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           +P+   + +   K  +  R      N + L+     +I   KTG+   +G  +V     +
Sbjct: 360 YPRIKTFSTATSKTVFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVR 419

Query: 260 DDPIVAVVMGMPTSQERDQKALEL 283
             P+  V++G P   +    A ++
Sbjct: 420 GRPVDIVLLGAPGPHDHVADAAKI 443


>gi|217969517|ref|YP_002354751.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thauera sp.
           MZ1T]
 gi|217506844|gb|ACK53855.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thauera sp.
           MZ1T]
          Length = 388

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 102/254 (40%), Gaps = 13/254 (5%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
            S +      +  VI+    ++   +   E    AS+TK+MT  ++ +      L L+  
Sbjct: 128 GSGMPVLASNAFYVINQRTGEVLLERNATEVLPIASITKLMTAMVVLDAG----LSLSEP 183

Query: 104 IPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           I ++     Q   +   L   T  + E+ +   +  S N  +++      G E  F   M
Sbjct: 184 IEINDADIDQLKGTGSRLALGTTLSREEMLQLALMSSENRAASSLARHYPGGEAAFVDAM 243

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS--IRKFRYR 220
           + KA+ +G+ NT + +++GL +   +++ RD A + +    ++P   ++ +   R     
Sbjct: 244 NVKARLLGLWNTRFHDSTGL-NPANVSSPRDLAKM-VAASASYPLIREFSTAHERYVPVH 301

Query: 221 NRIIT--NHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
            R++   N N L+      I   KTGY   +G  +V        P+V V+M       R 
Sbjct: 302 GRMLRFGNTNSLVRSPEWTISVSKTGYISEAGRCLVMQTWLHQQPVVMVLMDSSGRYTRT 361

Query: 278 QKALELITSFLEKK 291
             A  +     +  
Sbjct: 362 ADAKRVRKWLEQTA 375


>gi|239943733|ref|ZP_04695670.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           roseosporus NRRL 15998]
          Length = 436

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 109/283 (38%), Gaps = 27/283 (9%)

Query: 29  QLMGKILFLSIIMISMASELHAKPK----YSSIVIDVNKNQMTGFKQDEPR-YPASLTKM 83
            L G+ L +S   +++   +   PK     S IV D     +        R  PAS  KM
Sbjct: 30  SLGGERLSMSGSQVNLGPGVPVLPKGLTARSWIVADAENGDVLAAHNSHWRLPPASTMKM 89

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +    +   LQ  + H   ++  S+ A   +  S + +KE   +T     L +  RS ND
Sbjct: 90  LFADTVLPALQPTQTH---KVTESELAGVGEGSSLVGIKEDHTYTVHDLWLGVFLRSGND 146

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI--L 200
                     G  +     M   A+++   +T+  +  G     Q+++A D  ++    +
Sbjct: 147 AVHVLASMYGGMPQT-VAAMQKHAEELQALDTVVVSPDGYDAPRQVSSAYDLTLIARSGM 205

Query: 201 LRKNFPQYYKYFS------IRKFRYRN-RIITNHNKLL------NKMHNIDGIKTGYTRN 247
            +K+F +Y    S       +K + R+   I N N+L+      +    I G+K GYT +
Sbjct: 206 QKKDFREYAATASADFPGEKKKGKKRDSFEIQNTNRLITGDIGVDPYKGIAGVKNGYTTH 265

Query: 248 SGFNIVTSLRYKDDPIVAVVMG--MPTSQERDQKALELITSFL 288
           +G             ++  VM      S    ++A +L+    
Sbjct: 266 AGNTFTGVAERNGKVLLVTVMNPSAEESHAVYKEAAKLLDWGF 308


>gi|167900376|ref|ZP_02487777.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 7894]
 gi|167924801|ref|ZP_02511892.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei BCC215]
          Length = 378

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/267 (20%), Positives = 105/267 (39%), Gaps = 28/267 (10%)

Query: 40  IMISMASELHAKPKYSSI-----------VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLY 87
           ++ +   +L A+  Y++            V+D     +   K      P AS+TK+MT  
Sbjct: 114 VVAAAKPQLLARCGYTAASRHLLRSRAIYVVDERTGTVLIEKNANRVMPIASVTKLMTSM 173

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVS 144
           +  +     +  ++  + VS           S+  LK  +  +    +   +  S N  +
Sbjct: 174 VALD----TRAPMSRPLRVSAQDRDYEKFTGSR--LKVGSVLSRRDMLHIALMSSENRAA 227

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A      G    F   M+ KA+ +GM+ T + NA+GL     ++TARD + L     + 
Sbjct: 228 AALSRDYPGGRPAFVAAMNRKARTLGMKRTHFVNATGLS-PRNVSTARDLSRLVAAASR- 285

Query: 205 FPQYYKYFS-IRKFRYRNRII---TNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           +P+   + +   K  +  R      N + L+     +I   KTG+   +G  +V     +
Sbjct: 286 YPRIKTFSTATSKTVFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVR 345

Query: 260 DDPIVAVVMGMPTSQERDQKALELITS 286
             P+  V++G P   +    A ++   
Sbjct: 346 GRPVDIVLLGAPGPHDHVADAAKIRRW 372


>gi|258513818|ref|YP_003190040.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257777523|gb|ACV61417.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 373

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/310 (23%), Positives = 130/310 (41%), Gaps = 31/310 (10%)

Query: 41  MISMASELHAKPKYS----------SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
           M + + +L A+P  S          +I+I++  + +   K  +E  YPASLTKMMT  + 
Sbjct: 67  MPAPSLKLEAEPSVSISPGELNSPNAILINLKDHTILMQKNSEEKIYPASLTKMMTAIVA 126

Query: 90  FEYLQS--KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
            E L    K++ L   +   +  +  + S    +          +   +  S  +     
Sbjct: 127 IENLPDLKKEITLTDSV--FRGLSEADASMAGFRPGENVRAIDLLYGALLPSGAESCVEL 184

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--F 205
            ++I+GSEK F  +M+ KA  +GM NT ++N++GL ++N  TT +D A+L     +N  F
Sbjct: 185 ADYIAGSEKDFVGMMNQKAADLGMYNTYFENSTGLQNENHYTTVKDLAVLLSYALQNDTF 244

Query: 206 PQYY--KYFSIRKFRYRNRIITNHNKLLNKMHN-------IDGIKTGYTRNSGFNIVTSL 256
            + +     S          IT ++ + ++++N       I G KTGYT  +G  + +  
Sbjct: 245 REIFTSTRHSTPPTNKHPDGITFYSTMFDELNNRSITDGKILGGKTGYTAEAGLCLASLA 304

Query: 257 RYKDDPIVAVVMGMP----TSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
           +        +  G      + Q     AL +    L K   K       +++     K+ 
Sbjct: 305 QVGKQEYSLISAGAKGDHHSEQYNITDALAVYNR-LGKNDYKVNSARVTEDVLRQHDKRR 363

Query: 313 LMIKKLKRTY 322
           L    LKR  
Sbjct: 364 LNNPPLKRPQ 373


>gi|331083982|ref|ZP_08333089.1| hypothetical protein HMPREF0992_02013 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330402344|gb|EGG81914.1| hypothetical protein HMPREF0992_02013 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 301

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 62/232 (26%), Positives = 92/232 (39%), Gaps = 13/232 (5%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++I++D    Q+ G K  E + YPASLTK+MT+ +  E L + +     +  +      Q
Sbjct: 52  AAILLDEE-GQILGRKNSEKKIYPASLTKIMTVLLSIEKLDNIREITVLREEIFPELYAQ 110

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           + S          T    +   +  S  +   A  E   GSEK+F   M+ KAKK+ M+N
Sbjct: 111 DASMAGFLPGEKVTYRDLLYGAMLPSGAECCVALAEGSCGSEKEFVSEMNKKAKKLVMKN 170

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKN------FPQYYKYFSIRKFRYRNRIITNH 227
           T + N +GLHD N  TT  D + L     KN      F  +                 + 
Sbjct: 171 THFTNTTGLHDDNHYTTVEDLSRLLCYAMKNQDFSKIFTAFSYSVPATNKHPEGFTFFST 230

Query: 228 -----NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
                 K   K   I G KTGYT N+G  + T+          +      S 
Sbjct: 231 LSQELQKAGVKDSCILGGKTGYTSNAGLCLATAAEINGKKYFFITAHAQGSH 282


>gi|224826640|ref|ZP_03699741.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Lutiella
           nitroferrum 2002]
 gi|224601241|gb|EEG07423.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Lutiella
           nitroferrum 2002]
          Length = 290

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 102/256 (39%), Gaps = 17/256 (6%)

Query: 42  ISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKK 97
           I +A+ +   P  +S   +V++    +    K  +   P AS+TK+MT  +  +      
Sbjct: 30  IQVAANMTGAPHLNSHTVLVLNGANGEALYQKNTDLPLPFASITKLMTAMVTLDAG---- 85

Query: 98  LHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           L ++  I +++    +   +   L   T     + +L  +  S N  + A      G  +
Sbjct: 86  LSMDEPITITENEIDRLKNTSSRLSVGTTLPRREMLLLALMSSENRAAAALARTYPGGTQ 145

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F   M+ KA+ +GM NT++ + +GL  +N   TA D A +       +P    + + ++
Sbjct: 146 AFVAQMNRKARALGMNNTVFYDPTGLEVRNTA-TAMDLARMVRAA-NGYPLIRTFTTTQE 203

Query: 217 FRYRNRI-----ITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
               +         N N L+     +I   KTGY + +G  +V        P++ V++  
Sbjct: 204 HEVMSGSRRMLHYKNSNALVREGDWDISLQKTGYIQEAGRCMVLQTTVGSQPLIIVLLAA 263

Query: 271 PTSQERDQKALELITS 286
                R   A  +   
Sbjct: 264 GAPSARVSDARAIRNW 279


>gi|254190742|ref|ZP_04897249.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|157938417|gb|EDO94087.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 470

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 105/267 (39%), Gaps = 28/267 (10%)

Query: 40  IMISMASELHAKPKYSSI-----------VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLY 87
           ++ +   +L A+  Y++            V+D     +   +      P AS+TK+MT  
Sbjct: 206 VVAAAKPQLLARCGYTAASRHLLRSRAIYVVDERTGTVLIERNANRVMPIASVTKLMTSM 265

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVS 144
           +  +     +  ++  + VS           S+  LK  +  +    +   +  S N  +
Sbjct: 266 VALD----TRAPMSRPLRVSAQDRDYEKFTGSR--LKVGSVLSRRDMLHIALMSSENRAA 319

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A      G    F   M+ KA+ +GM+ T + NA+GL     ++TARD + L     + 
Sbjct: 320 AALSRDYPGGRPAFVAAMNRKARTLGMKRTHFVNATGLS-PRNVSTARDLSRLVAAASR- 377

Query: 205 FPQYYKYFS-IRKFRYRNRII---TNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           +P+   + +   K  +  R      N + L+     +I   KTG+   +G  +V     +
Sbjct: 378 YPRIKTFSTATSKTVFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVR 437

Query: 260 DDPIVAVVMGMPTSQERDQKALELITS 286
             P+  V++G P   +    A ++   
Sbjct: 438 GRPVDIVLLGAPGPHDHVADAAKIRRW 464


>gi|302544682|ref|ZP_07297024.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462300|gb|EFL25393.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 309

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 93/254 (36%), Gaps = 25/254 (9%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPV----SKTAAT 112
           V++    +    K  + R    S TK+MT  ++        L+LN+++ +    S     
Sbjct: 60  VMNNGTGKDLYKKAADTRLSTGSTTKIMTARVVL---AQPNLNLNSKVTIQKAYSDYIVD 116

Query: 113 QN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS------EKKFAILMSNK 165
            N  S   L      T  Q +  L+  S  D + A  +            K F   M++ 
Sbjct: 117 NNWASSARLIVGDKVTVRQLLYGLMLPSGCDAAYALADKFGSGSTRAARVKSFIGKMNST 176

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR------- 218
           AK +G++NT + +  G+      +T RD   L     K +  +      +K         
Sbjct: 177 AKSLGLKNTNFDSFDGIGHGKNYSTPRDLTKLASSAMK-YSTFRSVVKTKKTTQKTVTKS 235

Query: 219 --YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
             YRN    N N LL       G+KTG    + + +V +       ++  V+   +   R
Sbjct: 236 GGYRNMTWENTNPLLGTYSGAIGVKTGSGPEAKYCLVFAATRSGKTVIGTVLASSSVATR 295

Query: 277 DQKALELITSFLEK 290
              A +L+    +K
Sbjct: 296 TSDAKKLLNYGFKK 309


>gi|295102108|emb|CBK99653.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
           L2-6]
          Length = 441

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 97/257 (37%), Gaps = 22/257 (8%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLN-TQIPVSKTA-- 110
           +  ++D +   +   +  +E  +PAS+TK+MTL +     Q  + + +  ++ VS     
Sbjct: 33  AYCIMDADTGLVLAQQNMNEELHPASITKVMTLGL---ACQKAQGNWDGVKLTVSHEDVY 89

Query: 111 --ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG-SEKKFAILMSNKAK 167
             A  + S + L+E      +  +   +  SAND +    E+  G + +     M+ +  
Sbjct: 90  SLAGTDSSHIALREGEEVPLQDALYGTMIASANDGANLLAEYFGGGTIEGGVAAMNAQVA 149

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSIRKFRYRN---- 221
            +G+++T + N  G+   +  T+  D A +         F   +    +      N    
Sbjct: 150 ALGLEHTHFANPHGISGDDHYTSCYDMAQILRWALTQPGFETIFTRLEMYTMAPTNVQPV 209

Query: 222 -RIITNHNKLLNKM-----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
            R  +  +K+           I G K GYT  + ++ V         ++ V M      +
Sbjct: 210 TRYFSQQDKMRLSYSRYYIPAIRGSKIGYTNIARYSYVCLAEQNGVRLICVTMQSEMKTD 269

Query: 276 RDQKALELITSFLEKKT 292
           +      L+     + T
Sbjct: 270 KYNDVRTLLDYAFARYT 286


>gi|157833819|pdb|1SKF|A Chain A, Crystal Structure Of The Streptomyces K15
           Dd-Transpeptidase
          Length = 262

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 93/262 (35%), Gaps = 28/262 (10%)

Query: 51  KPKYSSI---VIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
           KP  +++    ++         K  D  R   S TK+MT  ++        L+L+ ++ +
Sbjct: 3   KPTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVL---AQSNLNLDAKVTI 59

Query: 107 ----SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS------EK 156
               S      N S+ +L      T  Q +  L+  S  D + A  +            K
Sbjct: 60  QKAYSDYVVANNASQAHLIVGDKVTVRQLLYGLMLPSGCDAAYALADKYGSGSTRAARVK 119

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F   M+  A  +G+ NT + +  G+ +    +T RD   +     KN   +      + 
Sbjct: 120 SFIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLTKIASSAMKNS-TFRTVVKTKA 178

Query: 217 FRYRNRI----------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           +  +               N N LL+      G+KTG    + + +V +       ++  
Sbjct: 179 YTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGT 238

Query: 267 VMGMPTSQERDQKALELITSFL 288
           V+   +   R+  A +++    
Sbjct: 239 VLASTSIPARESDATKIMNYGF 260


>gi|319947348|ref|ZP_08021581.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus australis
           ATCC 700641]
 gi|319746590|gb|EFV98850.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus australis
           ATCC 700641]
          Length = 429

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/258 (23%), Positives = 109/258 (42%), Gaps = 30/258 (11%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT--AA 111
           + IV+D +   +      D PR   S+ K+M++Y++ + +Q  +L  +TQI  ++T  A 
Sbjct: 52  ADIVVDAHTGAIVYGDNIDAPRDSGSMAKLMSVYVLLKAIQEGQLDYDTQITATETDVAI 111

Query: 112 TQN--PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKK 168
           +QN   S   +     +     +  +   S++  +      +SG +  KF  LM+ +A++
Sbjct: 112 SQNQKLSNSPIVAGAKYKVSTLLNMIFVPSSSAATIMIANKVSGGDPDKFLDLMNQRAQE 171

Query: 169 IGMQNTIYKNASGLH---------------DKNQITTARDQAILGILLRKNFPQYYKYFS 213
           IGM NT + N +G                      TTARD AIL   +   FP+   Y  
Sbjct: 172 IGMTNTKWNNPNGAPTAVLDGYYNPTRYDQHAINQTTARDMAILAYHMVNEFPEILNYTK 231

Query: 214 IRKFR-YRNR----IITNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
             K   +          N+N  L      +   DG+KTG +  + +N   ++   +   V
Sbjct: 232 NAKITLFEGTDYEETHENYNYSLEGGRYSLKGADGLKTGSSPTADYNYTLTVNRGNQRFV 291

Query: 265 AVVMGMPTSQERDQKALE 282
            V+MG+        ++L 
Sbjct: 292 QVIMGVGHYDVEIAESLR 309


>gi|134281097|ref|ZP_01767806.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 305]
 gi|134247403|gb|EBA47488.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 305]
          Length = 478

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 105/267 (39%), Gaps = 28/267 (10%)

Query: 40  IMISMASELHAKPKYSSI-----------VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLY 87
           ++ +   +L A+  Y++            V+D     +   +      P AS+TK+MT  
Sbjct: 214 VVAAAKPQLLARCGYTAASRHLLRSRAIYVVDERTGTVLIERNANRVMPIASVTKLMTSM 273

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVS 144
           +  +     +  ++  + VS           S+  LK  +  +    +   +  S N  +
Sbjct: 274 VALD----TRAPMSRPLRVSAQDRDYEKFTGSR--LKVGSVLSRRDMLHIALMSSENRAA 327

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A      G    F   M+ KA+ +GM+ T + NA+GL     ++TARD + L     + 
Sbjct: 328 AALSRDYPGGRPAFVAAMNRKARTLGMKRTHFVNATGLS-PRNVSTARDLSRLVAAASR- 385

Query: 205 FPQYYKYFS-IRKFRYRNRII---TNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           +P+   + +   K  +  R      N + L+     +I   KTG+   +G  +V     +
Sbjct: 386 YPRIKTFSTATSKTVFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVR 445

Query: 260 DDPIVAVVMGMPTSQERDQKALELITS 286
             P+  V++G P   +    A ++   
Sbjct: 446 GRPVDIVLLGAPGPHDHVADAAKIRRW 472


>gi|5353565|gb|AAD42182.1|AF130997_3 D,D carboxypeptidase [Enterococcus faecium]
          Length = 356

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 103/258 (39%), Gaps = 32/258 (12%)

Query: 53  KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT-- 109
             ++IV++ + N++   K+      PAS  KM+      +Y          ++ V     
Sbjct: 101 AANAIVMNKDTNEVLYQKKSTAKIAPASTAKMIMALTALDYC-----SPEDEMKVGAEIG 155

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG----EFISGS--------EKK 157
               + S  +L +    T  Q ++AL+  S ND +        + I+G          + 
Sbjct: 156 MIQSDSSTAWLMKGDTLTVRQLLIALMLPSGNDAAYTLAVNTGKAIAGDNSLTSQQAIEV 215

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS---- 213
           F   ++ KA  +G  N+ +    G   + Q TTA D AI+      N P   +  +    
Sbjct: 216 FMDKVNEKAVALGATNSKFVAPDGYDAEGQYTTAYDLAIIAKACLDN-PIISEIVASYSS 274

Query: 214 -IRKFRYRNRIITNHNKLLNKM-----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
             +    R     N N+LL+         + G+KTG +   G  IV++     +  + VV
Sbjct: 275 YEKWSNGREVTYNNSNELLDPNSPYYRPEVIGLKTGTSSLGGACIVSAAVMDGETYICVV 334

Query: 268 MGMPTSQERDQKALELIT 285
           MG  T + R Q +++++ 
Sbjct: 335 MGS-TKESRFQDSVDILD 351


>gi|302519918|ref|ZP_07272260.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB78]
 gi|302428813|gb|EFL00629.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB78]
          Length = 939

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/279 (24%), Positives = 127/279 (45%), Gaps = 20/279 (7%)

Query: 46  SELHAKPKYSSIVIDVNK-NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKK------L 98
           +     PK     +DV+           +P   AS+ K+MT Y++      KK      +
Sbjct: 580 AAAMPWPKSGQAAMDVDGLGSFGSSGTQKPVPIASVAKVMTAYLVLRDHPVKKGGDGASI 639

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            ++ +       + QN S + ++     + ++ I A++  SAN+++     + +GSEK F
Sbjct: 640 TMDQKAEDDAGLSAQNESTVDVRAGQKLSQKEAIEAIMLASANNIARQLARWDAGSEKDF 699

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF- 217
              M+  A ++GM+NT Y + SGL +K  ++TA DQ  LG +  K+ P + +   +  + 
Sbjct: 700 VAKMNKAADELGMKNTTYTDPSGL-NKTTVSTAEDQVKLGKVAMKD-PLFREVVRMPAYV 757

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY--KD--DPIVAVVMGMPTS 273
               +  TN N+L+  M+N  GIKTG T  +G N++ +           IV  V+  P +
Sbjct: 758 DSNGKTQTNWNRLV-PMNNTVGIKTGTTTAAGGNLLYAATKEVGGTTRTIVGAVLAQPPA 816

Query: 274 QERDQKALELITSF-----LEKKTLKHQQTHRKDNLSST 307
            E +      + +        + TL  ++  +K ++  +
Sbjct: 817 PEDNSILTGALNAGKALIEAAQGTLVAEKVVKKGDVVGS 855


>gi|330979275|gb|EGH78054.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 266

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 102/243 (41%), Gaps = 21/243 (8%)

Query: 57  IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +VID+  +++      +   P AS+TK+MT  ++ +  Q     ++  IPV+    +Q P
Sbjct: 1   MVIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVVLDAKQP----MDEVIPVN---ISQTP 53

Query: 116 SKLYL----KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +    K  +       +L  +  S N  + +      G    F + M+ KAK +GM
Sbjct: 54  EMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKALGM 113

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI--RKFRYRNRIIT---- 225
           ++T Y   +GL   N ++TARD   L +  RK +P   +  +   +   +R    T    
Sbjct: 114 KHTAYVEPTGLSVYN-VSTARDLTKLVMAARK-YPLLSELSTTEQKTVTFRKPTYTLGFS 171

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N + L+ K   +I   KTG+T  +G  +V      + P+  V++           A  + 
Sbjct: 172 NTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYTHFADASRIR 231

Query: 285 TSF 287
              
Sbjct: 232 KWM 234


>gi|331268991|ref|YP_004395483.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum
           BKT015925]
 gi|329125541|gb|AEB75486.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum
           BKT015925]
          Length = 444

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/307 (21%), Positives = 123/307 (40%), Gaps = 46/307 (14%)

Query: 35  LFLSIIMISMASELHAKPKY--SSIVIDVNKNQMTGFKQDE--PRYPASLTKMMTLYIIF 90
           +FLS    + A+ L+A      S+IV+D    ++   K  +  P YPAS        ++ 
Sbjct: 14  IFLSFCTTAFAANLNAPNVVGKSAIVVDAKTGEVIYAKDVDTSPMYPAST-----TKLLT 68

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLY------LKEKTYFTTEQGILALITRSANDVS 144
             L ++       +  +  A+ Q    L       LK     + +  +  L+  SAND++
Sbjct: 69  ALLLAENKQPTDILTYTDGASKQPEYTLRSFLKGQLKVGDKMSADDAMKGLLLHSANDIA 128

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK--NQITTARDQAILGILLR 202
               + ++G+ + FA +M++K KK+G+ +T +   +GL +   +  T+A D +++G    
Sbjct: 129 YMIADNVAGNTENFAKMMNDKIKKLGLTHTHFVTPNGLDNGITDHYTSAYDLSVIGRAAY 188

Query: 203 KNFPQYYKYFSIRKFRY--RNRII---TNHNKLLNKMHN--------------------I 237
           +N     K  +++K +    N ++    N NKLL K  +                     
Sbjct: 189 EN-EWVRKTMNLKKDKIELTNGVLGYPENRNKLLGKTLDSNFNSKTGINIKDVPVSDAVC 247

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER---DQKALELITSFLEKKTLK 294
            G KTGYT  +G  +V         ++ VVM     +          + I      K + 
Sbjct: 248 IGGKTGYTSKAGRCLVAMFNKDGRILIGVVMKSAYDKNDTYVFNDMAKTINWAYSAKQVA 307

Query: 295 HQQTHRK 301
             +   +
Sbjct: 308 LYKADTE 314


>gi|260907390|ref|ZP_05915712.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brevibacterium linens
           BL2]
          Length = 408

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/331 (21%), Positives = 131/331 (39%), Gaps = 45/331 (13%)

Query: 16  TYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPK---------------------- 53
           T       + R +     +L L   ++   +   A P+                      
Sbjct: 7   TASSPRAALLRVLGFAAALLVLPAQLVHSPAPAQAVPQPAESTAPAYVSPDDLGDGAKPP 66

Query: 54  ----YSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
                S +V D++  ++   K  E R+ PAS  K++T   + +    KK     ++    
Sbjct: 67  KPTGTSWLVGDLDSGELHVAKNVEKRHAPASTIKLLTALALVDEFDDKK----KKVTAEF 122

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                + +K+ L +   ++ +    A++  SAND + A G    G +K    LM+ KA +
Sbjct: 123 EDMEVDGTKVGLMQTNKYSIDLLFHAMLMSSANDAANALGRAAGGQDKA-VDLMNEKAAE 181

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN-------FPQYYKYFS----IRKF 217
           +GM NT  KN SGL  K Q TTA D   L   + ++         + Y++        K 
Sbjct: 182 LGMSNTQAKNTSGLDAKGQYTTAEDLMKLAWAVCEDDYLMKVIGTETYQFPGGTNPETKE 241

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           +++   I NH K+  ++    G+K G+TR +  + V         +VA ++G+  +    
Sbjct: 242 KFKGYEIQNHTKIAGQVDGGLGLKNGFTRAAKGSYVAVAERDGHRVVATMLGIDNNSR-- 299

Query: 278 QKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
           Q A++L+     +   K  QT      ++  
Sbjct: 300 QAAVDLLEWDFAQTDPKSLQTVPVGVQATAE 330


>gi|242315730|ref|ZP_04814746.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106b]
 gi|242138969|gb|EES25371.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106b]
          Length = 428

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 105/267 (39%), Gaps = 28/267 (10%)

Query: 40  IMISMASELHAKPKYSSI-----------VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLY 87
           ++ +   +L A+  Y++            V+D     +   +      P AS+TK+MT  
Sbjct: 164 VVAAAKPQLLARCGYTAASRHLLRSRAIYVVDERTGTVLIERNANRVMPIASVTKLMTSM 223

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVS 144
           +  +     +  ++  + VS           S+  LK  +  +    +   +  S N  +
Sbjct: 224 VALD----TRAPMSRPLRVSAQDRDYEKFTGSR--LKVGSVLSRRDMLHIALMSSENRAA 277

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A      G    F   M+ KA+ +GM+ T + NA+GL     ++TARD + L     + 
Sbjct: 278 AALSRDYPGGRPAFVAAMNRKARTLGMKRTHFVNATGLS-PRNVSTARDLSRLVAAASR- 335

Query: 205 FPQYYKYFS-IRKFRYRNRII---TNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           +P+   + +   K  +  R      N + L+     +I   KTG+   +G  +V     +
Sbjct: 336 YPRIKTFSTATSKTVFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVR 395

Query: 260 DDPIVAVVMGMPTSQERDQKALELITS 286
             P+  V++G P   +    A ++   
Sbjct: 396 GRPVDIVLLGAPGPHDHVADAAKIRRW 422


>gi|239990182|ref|ZP_04710846.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           roseosporus NRRL 11379]
          Length = 452

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 109/283 (38%), Gaps = 27/283 (9%)

Query: 29  QLMGKILFLSIIMISMASELHAKPK----YSSIVIDVNKNQMTGFKQDEPR-YPASLTKM 83
            L G+ L +S   +++   +   PK     S IV D     +        R  PAS  KM
Sbjct: 46  SLGGERLSMSGSQVNLGPGVPVLPKGLTARSWIVADAENGDVLAAHNSHWRLPPASTMKM 105

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +    +   LQ  + H   ++  S+ A   +  S + +KE   +T     L +  RS ND
Sbjct: 106 LFADTVLPALQPTQTH---KVTESELAGVGEGSSLVGIKEDHTYTVHDLWLGVFLRSGND 162

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI--L 200
                     G  +     M   A+++   +T+  +  G     Q+++A D  ++    +
Sbjct: 163 AVHVLASMYGGMPQT-VAAMQKHAEELQALDTVVVSPDGYDAPRQVSSAYDLTLIARSGM 221

Query: 201 LRKNFPQYYKYFS------IRKFRYRN-RIITNHNKLL------NKMHNIDGIKTGYTRN 247
            +K+F +Y    S       +K + R+   I N N+L+      +    I G+K GYT +
Sbjct: 222 QKKDFREYAATASADFPGEKKKGKKRDSFEIQNTNRLITGDIGVDPYKGIAGVKNGYTTH 281

Query: 248 SGFNIVTSLRYKDDPIVAVVMG--MPTSQERDQKALELITSFL 288
           +G             ++  VM      S    ++A +L+    
Sbjct: 282 AGNTFTGVAERNGKVLLVTVMNPSAEESHAVYKEAAKLLDWGF 324


>gi|307726448|ref|YP_003909661.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. CCGE1003]
 gi|307586973|gb|ADN60370.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. CCGE1003]
          Length = 415

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 97/243 (39%), Gaps = 15/243 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S  VID     +   KQ +   P AS++K+MT  +  +   +    LN  + V     
Sbjct: 173 ARSVFVIDERTQTVLTEKQADTVMPIASISKLMTAVVSLDAKHALDAPLN--VTVQDQDF 230

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   S+  L   +       +   +  S N  + A     +G    F   M+ KA+ +G
Sbjct: 231 DKFTGSR--LSVGSVLPRHDMLHIALMSSENRAAAALSRDYAGGRPGFVAAMNAKARALG 288

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR-KFRYRNR-----II 224
           M++T + N +GL   + ++TARD A L     + +P    Y + R +  +          
Sbjct: 289 MRHTRFVNGTGLS-PHNVSTARDLARLVAAASR-YPLIRAYSTDRAQLVFPGGRRASLSY 346

Query: 225 TNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            N N L+     +I   KTG+   +G  +V  +     PI  VV+G P  ++     + +
Sbjct: 347 HNSNALVRGGDRSIVLQKTGFINEAGHCVVVRMMVHGRPIDIVVLGAPGPRDHLADVIRI 406

Query: 284 ITS 286
              
Sbjct: 407 RRW 409


>gi|318056957|ref|ZP_07975680.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SA3_actG]
          Length = 886

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/279 (24%), Positives = 127/279 (45%), Gaps = 20/279 (7%)

Query: 46  SELHAKPKYSSIVIDVNK-NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKK------L 98
           +     PK     +DV+           +P   AS+ K+MT Y++      KK      +
Sbjct: 527 AAAMPWPKSGQAAMDVDGLGSFGSSGAQKPVPIASVAKVMTAYLVLRDHPVKKGGDGASI 586

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            ++ +       + QN S + ++     + ++ I A++  SAN+++     + +GSEK F
Sbjct: 587 TMDQKAEDDAGLSAQNESTVDVRAGQKLSQKEAIEAIMLASANNIARQLARWDAGSEKDF 646

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF- 217
              M+  A ++GM+NT Y + SGL +K  ++TA DQ  LG +  K+ P + +   +  + 
Sbjct: 647 VAKMNKAADELGMKNTTYTDPSGL-NKTTVSTAEDQVKLGKVAMKD-PLFREVVRMPAYV 704

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY--KD--DPIVAVVMGMPTS 273
               +  TN N+L+  M+N  GIKTG T  +G N++ +           IV  V+  P +
Sbjct: 705 DSNGKTQTNWNRLV-PMNNTVGIKTGTTTAAGGNLLYAATKEVGGTTRTIVGAVLAQPPA 763

Query: 274 QERDQKALELITSF-----LEKKTLKHQQTHRKDNLSST 307
            E +      + +        + TL  ++  +K ++  +
Sbjct: 764 PEDNSILTGALNAGKALIEAAQGTLVAEKVVKKGDVVGS 802


>gi|228985666|ref|ZP_04145819.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774061|gb|EEM22474.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 272

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 102/229 (44%), Gaps = 12/229 (5%)

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT YI  E L    + L+  + +S        S + +  K   T    +  L+    N  
Sbjct: 1   MTEYITLEQLNEGTIQLDEVVKISNEVFRAETSPIQVTSKDRTTVRDLLHTLLLTGNNRS 60

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGM-QNTIYKNASGLHDKNQI---TTARDQAILGI 199
           + A  E I+G+E KF  LM+ KAK + + Q++ + NA+G+++       TTA + A L  
Sbjct: 61  ALALAEHIAGNEDKFTQLMNEKAKHLKLSQSSPFLNATGMNNDTNKLSTTTAIEVAKLAT 120

Query: 200 LLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGYTRNSGFN 251
            L  +FP       +    F +++  + N NK++       K   +DG++T ++ N  ++
Sbjct: 121 QLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKHQGVDGLQTSFSTNGNYS 180

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
            V++ +  D  +++V++          +  +L+    +  +    Q  +
Sbjct: 181 FVSTAKRGDTRLISVILDAENENSTFIETKKLLQYGFDPSSYSALQAFK 229


>gi|330900670|gb|EGH32089.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 266

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 102/243 (41%), Gaps = 21/243 (8%)

Query: 57  IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +VID+  +++      +   P AS+TK+MT  ++ +  Q     ++  IPV+    +Q P
Sbjct: 1   MVIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVVLDAKQP----MDEVIPVN---ISQTP 53

Query: 116 SKLYL----KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +    K  +       +L  +  S N  + +      G    F + M+ KAK +GM
Sbjct: 54  EMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKALGM 113

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI--RKFRYRNRIIT---- 225
           ++T Y   +GL   N ++TARD   L +  RK +P   +  +   +   +R    T    
Sbjct: 114 KHTAYVEPTGLSVYN-VSTARDLTKLVMAARK-YPLLSELSTTEQKTVTFRKPTYTLGFS 171

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N + L+ K   +I   KTG+T  +G  +V      + P+  V++           A  + 
Sbjct: 172 NTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYTHFADAGRIR 231

Query: 285 TSF 287
              
Sbjct: 232 KWM 234


>gi|291447193|ref|ZP_06586583.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces roseosporus NRRL
           15998]
 gi|291350140|gb|EFE77044.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces roseosporus NRRL
           15998]
          Length = 449

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 109/283 (38%), Gaps = 27/283 (9%)

Query: 29  QLMGKILFLSIIMISMASELHAKPK----YSSIVIDVNKNQMTGFKQDEPR-YPASLTKM 83
            L G+ L +S   +++   +   PK     S IV D     +        R  PAS  KM
Sbjct: 43  SLGGERLSMSGSQVNLGPGVPVLPKGLTARSWIVADAENGDVLAAHNSHWRLPPASTMKM 102

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +    +   LQ  + H   ++  S+ A   +  S + +KE   +T     L +  RS ND
Sbjct: 103 LFADTVLPALQPTQTH---KVTESELAGVGEGSSLVGIKEDHTYTVHDLWLGVFLRSGND 159

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI--L 200
                     G  +     M   A+++   +T+  +  G     Q+++A D  ++    +
Sbjct: 160 AVHVLASMYGGMPQT-VAAMQKHAEELQALDTVVVSPDGYDAPRQVSSAYDLTLIARSGM 218

Query: 201 LRKNFPQYYKYFS------IRKFRYRN-RIITNHNKLL------NKMHNIDGIKTGYTRN 247
            +K+F +Y    S       +K + R+   I N N+L+      +    I G+K GYT +
Sbjct: 219 QKKDFREYAATASADFPGEKKKGKKRDSFEIQNTNRLITGDIGVDPYKGIAGVKNGYTTH 278

Query: 248 SGFNIVTSLRYKDDPIVAVVMG--MPTSQERDQKALELITSFL 288
           +G             ++  VM      S    ++A +L+    
Sbjct: 279 AGNTFTGVAERNGKVLLVTVMNPSAEESHAVYKEAAKLLDWGF 321


>gi|329910749|ref|ZP_08275375.1| Penicillin-binding protein precursor
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327546085|gb|EGF31152.1| Penicillin-binding protein precursor
           (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 351

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 105/238 (44%), Gaps = 13/238 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++V+D + +++   K      P AS+TK+MT  ++ E  Q+    ++  I V+     + 
Sbjct: 94  ALVMDQSNSKVLFEKNSNVALPIASITKLMTSMVVVESNQN----MDEMIEVTSDDIDRE 149

Query: 115 P-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   L+  +  +    +   +  S N  ++A G    G    F   M+ KAK +GM +
Sbjct: 150 KNSSSRLRVGSILSRSNMLHIALMSSENRAASALGRNYPGGLPAFVGAMNAKAKSLGMND 209

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI----ITNHNK 229
           T Y +++GL   N + +A+D A L I  R+      +Y +  K+  +        +N N 
Sbjct: 210 TRYVDSTGLSSHN-VASAQDLAKLVIAARQ-HQIIGQYSTDTKYVVKPGSGALQYSNSNH 267

Query: 230 LL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           L+ N   +ID  KTGY   +G  +V     +  PIV V +     Q R   A  +   
Sbjct: 268 LVGNPAWDIDLQKTGYINEAGRCMVMLTNIEGRPIVMVFLDSKGKQSRTADAGRIRKW 325


>gi|307331360|ref|ZP_07610480.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           violaceusniger Tu 4113]
 gi|306882983|gb|EFN14049.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           violaceusniger Tu 4113]
          Length = 293

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 90/254 (35%), Gaps = 25/254 (9%)

Query: 58  VIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV----SKTAAT 112
           V++    +    K  D  R   S TK+MT  ++        L+L+ ++ V    S     
Sbjct: 44  VMNNGTGKSLFTKAADTRRSTGSTTKIMTARVVL---AQPNLNLDAKVTVQKAYSDYIVD 100

Query: 113 QN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS------EKKFAILMSNK 165
            N  S   L      T  Q +  L+  S  D + A  +            K F   M+  
Sbjct: 101 NNWASSAKLIVGDKVTVRQLLYGLMLPSGCDAAYALADKFGTGSTRAARVKSFIGKMNTT 160

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR------- 218
           AK +G+ NT + +  G+      +T RD   L     K +  +      +  +       
Sbjct: 161 AKSLGLTNTHFDSFDGIGRGANYSTPRDLTKLASSAMK-YSTFRTVVKTKSTKQKVTTKS 219

Query: 219 --YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
             YR    TN N LL       G+KTG    + + +V +       ++  V+   +   R
Sbjct: 220 GGYRYMSWTNTNNLLGSYSGTIGVKTGSGPEAKYCLVFAATRNGKTVIGTVLASSSVDAR 279

Query: 277 DQKALELITSFLEK 290
              A +++    ++
Sbjct: 280 TADAKKIMDYGFKQ 293


>gi|282863879|ref|ZP_06272937.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           sp. ACTE]
 gi|282561580|gb|EFB67124.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           sp. ACTE]
          Length = 321

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 58/282 (20%), Positives = 104/282 (36%), Gaps = 25/282 (8%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTL 86
            G +L          +     P  ++    V++    +    K  + R P  S TK+MT 
Sbjct: 43  AGALLAGGAFASGAQAAAPPTPSITAKGGFVMNNGTAKALYSKAADTRRPTGSTTKIMTA 102

Query: 87  YIIFEYLQSKKLHLNTQIPV----SKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
            ++      K L+L++++ +    S    ++N S   L      T  Q +  L+  S  D
Sbjct: 103 KVVL---AQKNLNLDSKVTIQKAYSDYIVSKNASSARLIVGDKVTVRQLLYGLMLPSGCD 159

Query: 143 VSTAFGEFISGS------EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            + A  +            K F   M+  AK +G++NT + +  G+   +  +T RD   
Sbjct: 160 AAYALADKFGSGSTRAARVKSFIGKMNASAKSLGLKNTHFDSFDGIGSGSNYSTPRDLTK 219

Query: 197 LGILLRKN--FPQYYKY------FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
           L     KN  F    K        + +   YR     N N LL       G+KTG    +
Sbjct: 220 LASNAMKNSTFRTVVKTKSTKQKVTTKSGGYRYMAWDNTNPLLGGYSGAIGVKTGSGPTA 279

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            + +V +       ++  V+   +   R   A +L+    +K
Sbjct: 280 KYCLVFAATRNGKTVIGTVLTSSSVSSRTSDAKKLLDYGFKK 321


>gi|729291|sp|P39042|DACX_STRSK RecName: Full=D-alanyl-D-alanine carboxypeptidase;
           Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
           Full=Penicillin-binding protein; Short=PBP; Flags:
           Precursor
 gi|581684|emb|CAA42591.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. K15]
          Length = 291

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 97/278 (34%), Gaps = 28/278 (10%)

Query: 35  LFLSIIMISMASELHAKPKYSSI---VIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIF 90
           L  +  + +  +    KP  +++    ++         K  D  R   S TK+MT  ++ 
Sbjct: 16  LLAAGTLGATPATAVTKPTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVL 75

Query: 91  EYLQSKKLHLNTQIPV----SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
                  L+L+ ++ +    S       PS+ +L      T  Q +  L+  S  D + A
Sbjct: 76  ---AQSNLNLDAKVTIQKAYSDYVVANKPSQAHLIVGDKVTVRQLLYGLMLPSGCDAAYA 132

Query: 147 FGEFISGSEKK------FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
             +      +       F   M+  A  +G+ NT + +  G+ +    +T R    +   
Sbjct: 133 LADKYGSGSQAAARVKSFIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRHLTKIASS 192

Query: 201 LRKNFPQYYKYFSIRKFRYRNRI----------ITNHNKLLNKMHNIDGIKTGYTRNSGF 250
             KN   +      + +  +               N N LL+      G+KTG    + +
Sbjct: 193 AMKNS-TFRTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKY 251

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
            +V +       ++  V+   +   R+  A +++    
Sbjct: 252 CLVFAATRGGKTVIGTVLASTSIPARESDATKIMNYGF 289


>gi|116334395|ref|YP_795922.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367]
 gi|116099742|gb|ABJ64891.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367]
          Length = 307

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 62/304 (20%), Positives = 135/304 (44%), Gaps = 36/304 (11%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMASELHA-------KPKYSSIVIDVNKNQMTGFKQ 71
              + ++R   L+   + LS +  ++ + + A           +++ ++ +  ++   K 
Sbjct: 1   MKKMKLKRWGLLVMAAISLSGVTTAVTAPVQAHAATFKLAKAKAAVAMNADTGKVVWSKA 60

Query: 72  -DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAATQNPS----KLYLKEKTY 125
            +  R  AS++K+MTLY+    +  K+ + N ++ + S+   + + S        K    
Sbjct: 61  GNTARPIASVSKIMTLYLTLAKVNGKQSNWNHKVKITSRGLVSMSRSAACGGFKFKLGHK 120

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
           +T +Q   A    S+N+ + A G+++SGS  KF   M+ +AK   +    + +ASGL + 
Sbjct: 121 YTVKQLYDAAFLDSSNNAAIALGQWVSGSNAKFIKKMNAQAKAWKLGKAHFVSASGLENS 180

Query: 186 N-------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL- 231
           +              + +A+D A++   L  ++P+          +   ++  N+N LL 
Sbjct: 181 DLQYYGYRYGTANANMVSAKDVALIARHLITDYPRVLTDGQAGSKKVDGQLCYNYNNLLA 240

Query: 232 -NKMH----NIDGIKTGYTRNSGFNIVTSLRY-KDDPIVAVVMGMPTSQERDQKALELIT 285
             K +    N+DG+KTGYT  +G+  V + +      I+ VV+     ++   +   L+ 
Sbjct: 241 GRKYYQASLNVDGLKTGYTPLAGYCFVGTGQMAGKHRIITVVL---HDEDEFTETRSLMN 297

Query: 286 SFLE 289
              +
Sbjct: 298 YAYQ 301


>gi|294630405|ref|ZP_06708965.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14]
 gi|292833738|gb|EFF92087.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14]
          Length = 283

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 99/282 (35%), Gaps = 27/282 (9%)

Query: 32  GKILFLSIIMISMASELHAKP--KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
           G +L    +    A  + A         V++         K  D      S TK+MT  +
Sbjct: 4   GAVLATGALTAMPAQAVSAPSIVAKGGYVMNNANGSSLYTKAADTKLSTGSTTKIMTAKV 63

Query: 89  IFEYLQSKKLHLNTQIPV----SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           +      K L+L+ ++ +    S      N S+ +L      T  Q +  L+  S  D +
Sbjct: 64  VL---SQKNLNLDAKVTIQKAYSDYVVKNNASQAHLIVGDKVTVRQLLYGLMLPSGCDAA 120

Query: 145 TAFGEFISGS------EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
            A  +            K F   M+  AK + ++NT + +  G+ +    +T RD   + 
Sbjct: 121 YALADKYGTGSTMSARVKSFIGKMNTAAKDLKLKNTHFDSFDGIGNGKNYSTPRDLTKIA 180

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNRI----------ITNHNKLLNKMHNIDGIKTGYTRNS 248
               KN   +      + +  +              TN N LL+      G+KTG    +
Sbjct: 181 SSAMKNAN-FRAIVKTKSYTAKTVTKTGSTRTMATWTNTNTLLSSYKGAIGVKTGSGPEA 239

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            + +V +       ++  V+   +  +R   A +L+     +
Sbjct: 240 KYCLVFAATRGSKTVIGTVLASSSINQRATDATKLLNYGFAR 281


>gi|257455273|ref|ZP_05620508.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Enhydrobacter
           aerosaccus SK60]
 gi|257447235|gb|EEV22243.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Enhydrobacter
           aerosaccus SK60]
          Length = 364

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 56/256 (21%), Positives = 105/256 (41%), Gaps = 21/256 (8%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           AS  +      ++V+D         K  +  R  AS++K+MT  ++ E   +    +   
Sbjct: 109 ASGSYFANSKGALVVDALTGNTIYEKNADIARPIASISKLMTAVVVAESGAN----MGET 164

Query: 104 IPVSK---TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
           + +S        Q+ S   LK        + +L ++ +S N  + A           F  
Sbjct: 165 LTISSLDFKTPKQSGSD-RLKVGDQLNRAEMLLMMMMKSENPAAKALARTDPMGYDNFIS 223

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
            M+ KA+++GM  T Y + SGL  +N + + RD AIL     K      ++ +    ++ 
Sbjct: 224 RMNQKARELGMTQTRYYDPSGLDSRN-VASPRDLAILARYAYK-HNLISQFSTTPSRQFG 281

Query: 221 NRIIT---------NHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
              I          + N ++   ++NI   KTGY R +G  ++      + P + V++G 
Sbjct: 282 VNNINSGYRTVAARSTNYMVRDGLYNIGLSKTGYIREAGNCVLFETNVGNRPAIVVLLGA 341

Query: 271 PTSQERDQKALELITS 286
             S+ R   A  +I +
Sbjct: 342 NDSKTRWNDAENIIAN 357


>gi|5759263|gb|AAD51058.1|AF175293_3 D,D carboxypeptidase [Enterococcus faecium]
          Length = 356

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 104/258 (40%), Gaps = 32/258 (12%)

Query: 53  KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT-- 109
             ++IV++ + N++   K+      PAS  KM+      +Y          ++ V     
Sbjct: 101 AANAIVMNKDTNEVLYQKKSTAQIAPASTAKMIMALTALDYC-----SPEDEMKVGAEIE 155

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF----ISGSE--------KK 157
               + S  +L +    T  Q ++AL+  S ND +          I+G +        + 
Sbjct: 156 MIQSDSSTAWLMKGDTLTVRQLLIALMLPSGNDAAYTLAVNTGKKIAGDKSLTHQQAIEV 215

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS---- 213
           F   ++ KA  +G  N+ +    G   + Q TTA D AI+      N P   +  +    
Sbjct: 216 FMDKVNEKAVDLGATNSKFIAPDGYDAEGQYTTAYDLAIIAKACLDN-PIISEIVASYSS 274

Query: 214 -IRKFRYRNRIITNHNKLLNKM-----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
             +    R    +N N+LL+         + G+KTG +   G  IV++     +  + VV
Sbjct: 275 YEKWPNGREVTYSNSNELLDPNSPYYRPEVIGLKTGTSSLGGACIVSAAVIDGETYICVV 334

Query: 268 MGMPTSQERDQKALELIT 285
           MG  T + R Q +++++ 
Sbjct: 335 MGS-TKESRFQDSVDILD 351


>gi|302549283|ref|ZP_07301625.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces viridochromogenes
           DSM 40736]
 gi|302466901|gb|EFL29994.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces viridochromogenes
           DSM 40736]
          Length = 412

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 93/259 (35%), Gaps = 20/259 (7%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           A  +      S +V D     +        R  PAS  K +    +   L +   H    
Sbjct: 88  APRVPRVSALSWLVADARTGVVLAAYNAHRRLPPASTLKTLFAVTVMPELPAGARH---T 144

Query: 104 IPVSKTAATQNPSK-LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           +   +       S  + + E   +        +   S ND      E + G  +  A  M
Sbjct: 145 VREDELQGIGEGSSLVGITEGRTYRVADLWRGVFLNSGNDAVHVLAE-LGGGWRTTARRM 203

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-- 220
             KA+ +G  +T   +  G     Q+++A D A+ G +  ++ P + +Y +  + R+   
Sbjct: 204 QAKARSLGALDTRVVSPDGYDTPGQVSSAFDLAVFGRVGLRD-PAFAQYCATVEARFPAG 262

Query: 221 ---NRIITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG-- 269
              +  I N N+LL           + GIK GYT ++G  +V + R     +V  VM   
Sbjct: 263 GGWSYPIRNTNRLLSGAPGVKPYRGLIGIKNGYTTHAGNTLVAAARRDGRTLVVTVMNPQ 322

Query: 270 MPTSQERDQKALELITSFL 288
                   ++A  L+    
Sbjct: 323 EGGGSTVYEEARSLLDWGF 341


>gi|257791061|ref|YP_003181667.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Eggerthella
           lenta DSM 2243]
 gi|317488221|ref|ZP_07946790.1| D-alanyl-D-alanine carboxypeptidase [Eggerthella sp. 1_3_56FAA]
 gi|257474958|gb|ACV55278.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Eggerthella
           lenta DSM 2243]
 gi|316912663|gb|EFV34203.1| D-alanyl-D-alanine carboxypeptidase [Eggerthella sp. 1_3_56FAA]
          Length = 349

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 58/265 (21%), Positives = 103/265 (38%), Gaps = 35/265 (13%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + ++D +   +   +  D+    ASLTK+MT  +  ++L +     +T I V+  AA+  
Sbjct: 61  AALMDED-GTLWFGRNADDAAQIASLTKIMTAIVAADWLDA-----STMIEVTPEAASVG 114

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVST---------AFGEFISGS-----EKKFAI 160
            S   L +    T +  + AL+T S ND ++            +  SG      E  F  
Sbjct: 115 ESSAGLAQGDSMTFDDALKALLTASGNDAASAIAQAAGARMLAQEGSGGDAYACEAAFVE 174

Query: 161 LMSNKAKKIGMQNTIYKNASGLH----DKNQITTARDQAILGILLRKN--------FPQY 208
            M+ KA ++G++N+ + N  GL      + Q + A D A +     +         F Q 
Sbjct: 175 AMNAKAAELGLENSFFANPHGLDFDAFAQGQYSCAADVATMLRAAMQIDLVRANIGFSQA 234

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-KDDPIVAVV 267
                 R        + N + LL         KTGYT  +G    +++         AVV
Sbjct: 235 -DITVQRDGAPVTLALENTDALLGSYPGACAAKTGYTLAAGPCAASAVNRGDGHKYYAVV 293

Query: 268 MGMPTSQERDQKALELITSFLEKKT 292
           +G  +  +R   +  L       ++
Sbjct: 294 LGSSSKPQRFVDSAALYDWAYANRS 318


>gi|313898282|ref|ZP_07831819.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. HGF2]
 gi|312956664|gb|EFR38295.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. HGF2]
          Length = 335

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 105/229 (45%), Gaps = 22/229 (9%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---- 110
           ++VID+   Q+   K  DE  +PASLTK++T  +  + +++    L+ +I +++      
Sbjct: 72  AMVIDLQDQQVLYEKNSDERLFPASLTKVLTAIVALDNMEN----LHKKITITEQDIEGL 127

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A  N S   L+     T E  + ALI  S  D + A    ++GS  KF   M+ KA  +G
Sbjct: 128 AEANASVAGLEAGEQVTLEDLLYALILPSGADGANALANHLNGSISKFVKDMNEKANGMG 187

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN---- 226
           M +T + N +GL DK   TT +D   +     KN P + K  +  ++             
Sbjct: 188 MLHTHFTNTTGLQDKQHYTTLQDMKKMMDHAWKN-PAFRKVMTTLRYTIPATKQHPNGLK 246

Query: 227 -HNKLLNKMHN-------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
             + LL    +       I G K+G+T  +G+ +++  R KD     V+
Sbjct: 247 LRSTLLFYDKDLKFPGGKIIGGKSGFTPEAGYCLISVARMKDGHQYMVI 295


>gi|302552772|ref|ZP_07305114.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces viridochromogenes
           DSM 40736]
 gi|302470390|gb|EFL33483.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces viridochromogenes
           DSM 40736]
          Length = 277

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 88/254 (34%), Gaps = 24/254 (9%)

Query: 58  VIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV----SKTAAT 112
           V++    +    K  D  R   S TK+MT  ++    +   L+L++++ V    S     
Sbjct: 27  VMNNATGKSLYTKAADTRRSTGSTTKIMTALVVL---KQSNLNLDSKVTVQKAYSDYIVE 83

Query: 113 QN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS------EKKFAILMSNK 165
            N  S   L      T  Q +  L+  S  D + A  +            K F   M++ 
Sbjct: 84  NNWASNAKLIVGDKVTVRQLLYGLMLPSGCDAAYALADKFGSGSTRAARVKSFIGKMNST 143

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP------QYYKYFSIRKFRY 219
           AK +G+ NT + +  G+   +  +T RD   +     KN                     
Sbjct: 144 AKSLGLSNTHFDSFDGIGKGSNYSTPRDLTKIASAAMKNSTFRTVVKTKKYTAKTTTKSG 203

Query: 220 RNRI---ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
             R      N N LL+      G+KTG    + + +V +       ++  V+       R
Sbjct: 204 GTRTMAPWENTNPLLSSYSGAIGVKTGSGPEAKYCLVFAATRNGKTVIGTVLASTNLDTR 263

Query: 277 DQKALELITSFLEK 290
              A +L+     K
Sbjct: 264 KSDATKLLNYGFTK 277


>gi|325830849|ref|ZP_08164233.1| serine-type D-Ala-D-Ala carboxypeptidase [Eggerthella sp. HGA1]
 gi|325487256|gb|EGC89699.1| serine-type D-Ala-D-Ala carboxypeptidase [Eggerthella sp. HGA1]
          Length = 347

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 59/265 (22%), Positives = 103/265 (38%), Gaps = 35/265 (13%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + ++D +   +   +  D+    ASLTK+MT  +  ++L +     +T I V+  AA+  
Sbjct: 61  AALMDED-GTLWFGRNADDAAQIASLTKIMTAIVAADWLDA-----STMIEVTPEAASVG 114

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVST---------AFGEFISGS-----EKKFAI 160
            S   L +    T +  + AL+T S ND ++            +  SG      E  F  
Sbjct: 115 ESSAGLAQGDSMTFDDALKALLTASGNDAASAIAQAAGARMLAQKGSGGDAYACEAAFVE 174

Query: 161 LMSNKAKKIGMQNTIYKNASGLH----DKNQITTARDQAILGILLRKN--------FPQY 208
            M+ KA ++G++N+ + N  GL      + Q + A D A +     +         F Q 
Sbjct: 175 AMNAKAAELGLENSFFANPHGLDFDAFAQGQYSCAADVATMLRAAMQIDLVRANIGFSQA 234

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-KDDPIVAVV 267
                 R        + N + LL         KTGYT  +G    T++         AVV
Sbjct: 235 -DITVQRDGAPVTLALENTDALLGSYPGACAAKTGYTLAAGPCAATAVNRGDGHEYYAVV 293

Query: 268 MGMPTSQERDQKALELITSFLEKKT 292
           +G  +  +R   +  L       ++
Sbjct: 294 LGSSSKPQRFVDSAALYDWAYANRS 318


>gi|83719868|ref|YP_441464.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis E264]
 gi|257139857|ref|ZP_05588119.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis E264]
 gi|83653693|gb|ABC37756.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis E264]
          Length = 383

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 103/265 (38%), Gaps = 28/265 (10%)

Query: 39  IIMISMASELHAKPKYSSI-----------VIDVNKNQMTGFKQDE-PRYPASLTKMMTL 86
            ++ +   +L A+  Y++            V+D     +   +        AS+TK+MT 
Sbjct: 118 AVVAAAKPQLLARCGYTAASRHLLRSRAIYVVDERTGTVLIERNANCVVPIASVTKLMTS 177

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDV 143
            +  +     +  ++  + VS           S+  LK  +       +   +  S N  
Sbjct: 178 MVALD----TRAPMSRPLRVSAQDRDYEKFTGSR--LKVGSVLPRRDMLHIALMSSENRA 231

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           + A      G    F   M+ KA+ +GM++T + NA+GL     ++TARD + L     +
Sbjct: 232 AAALSRDYPGGRPAFVAAMNRKARTLGMKHTHFVNATGLS-PRNVSTARDLSRLVAAASR 290

Query: 204 NFPQYYKYFS-IRKFRYRNRII---TNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY 258
            +P    + +   K  +  R      N + L+     +I   KTG+   +G  +V     
Sbjct: 291 -YPHIKSFSTDTSKTVFPGRGQLHYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAV 349

Query: 259 KDDPIVAVVMGMPTSQERDQKALEL 283
           +  P+  V++G P   +    A ++
Sbjct: 350 RGRPVDIVLLGAPGPHDHVADAAKI 374


>gi|7766854|pdb|1ES5|A Chain A, S216a Mutant Of Streptomyces K15 Dd-Transpeptidase
          Length = 262

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 93/262 (35%), Gaps = 28/262 (10%)

Query: 51  KPKYSSI---VIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
           KP  +++    ++         K  D  R   S TK+MT  ++        L+L+ ++ +
Sbjct: 3   KPTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVL---AQSNLNLDAKVTI 59

Query: 107 ----SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS------EK 156
               S      N S+ +L      T  Q +  L+  S  D + A  +            K
Sbjct: 60  QKAYSDYVVANNASQAHLIVGDKVTVRQLLYGLMLPSGCDAAYALADKYGSGSTRAARVK 119

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F   M+  A  +G+ NT + +  G+ +    +T RD   +     KN   +      + 
Sbjct: 120 SFIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLTKIASSAMKNS-TFRTVVKTKA 178

Query: 217 FRYRNRI----------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           +  +               N N LL+      G+KTG    + + +V +       ++  
Sbjct: 179 YTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGAGPEAKYCLVFAATRGGKTVIGT 238

Query: 267 VMGMPTSQERDQKALELITSFL 288
           V+   +   R+  A +++    
Sbjct: 239 VLASTSIPARESDATKIMNYGF 260


>gi|227514221|ref|ZP_03944270.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus fermentum
           ATCC 14931]
 gi|227087417|gb|EEI22729.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus fermentum
           ATCC 14931]
          Length = 431

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 66/348 (18%), Positives = 126/348 (36%), Gaps = 46/348 (13%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASELHAKP--------------------KYSSIVIDVN 62
           ++ R    +  +   +  + ++ + +HA                        ++I ID  
Sbjct: 8   WLYRTGAFLASLTMTAGSLTAVPAAVHADTTTSSTSSSSSTNSTTDYTVNAKAAIAIDAT 67

Query: 63  KNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSK 117
             Q+   K        AS++K++T+ +I + +++ KL  NT++ V+K  A        S 
Sbjct: 68  TGQVLYAKNANTKLAIASISKIITVGVIEQEIKAGKLSWNTKVKVTKEEAKLSENTEYSN 127

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           + L     +T ++   A + +SA+  +         S   F   M    KK G+ +    
Sbjct: 128 ITLTAGKSYTVKELTEAAMIKSADAAAITLSRATGDSTASFVKKMQAFVKKAGVTDAKLY 187

Query: 178 NASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI 223
           N  GL               +     TA D A +   L KN+P       +         
Sbjct: 188 NQVGLTNSQMGSYGLKGVAKNAENEMTATDVAKIAQYLIKNYPSLLNITKLTSTTIDGTT 247

Query: 224 ITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP-TSQER 276
           +T  NK+L    +      IDG+KTG +  +G   V++  Y+   I+ VV+       ER
Sbjct: 248 VTTINKMLPGQSDAPSQVKIDGLKTGTSDKAGACFVSTGTYQGHRIITVVLHATGGGDER 307

Query: 277 DQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
             +   L      + T    Q      + +  +  + +  + K T  +
Sbjct: 308 FTQTANLYHLIANEYTAYTVQPSVVATVPNGKVTTTTLTTQGKITLWK 355


>gi|239930109|ref|ZP_04687062.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
           14672]
 gi|291438449|ref|ZP_06577839.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
           14672]
 gi|291341344|gb|EFE68300.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
           14672]
          Length = 299

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 55/253 (21%), Positives = 97/253 (38%), Gaps = 23/253 (9%)

Query: 58  VIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV----SKTAAT 112
           V++    +    K  D  R   S TK+MT  ++      K L+L+ ++ +    S    +
Sbjct: 49  VMNDANGKSLYTKAADTRRSTGSTTKIMTAKVVL---AQKNLNLDAKVTIQMAYSDYIVS 105

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS------EKKFAILMSNKA 166
           +N S   L      T  Q +  L+  S  D + A  +            K F   M+ +A
Sbjct: 106 KNASSARLIVGDKVTVRQLLYGLMLPSGCDAAYALADKFGTGSTRSARVKSFIGKMNAEA 165

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSIRKFRYRNRI- 223
           KK+G++NT + +  G+ +    +T RD   +     KN  F    K              
Sbjct: 166 KKLGLKNTHFDSFDGIGNGKNYSTPRDLTKIASSAMKNSTFRTIVKTKKYTAKTTTKTGS 225

Query: 224 ------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
                  TN N LL+      G+KTG    S + +V +       ++  V+   ++ +R+
Sbjct: 226 TRTMAPWTNTNTLLSNYSGTIGVKTGSGSTSKYCLVFAATRNGKTVIGTVLTSSSAAQRE 285

Query: 278 QKALELITSFLEK 290
             A +L+     K
Sbjct: 286 TDAKKLLGYGFSK 298


>gi|170691174|ref|ZP_02882340.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           graminis C4D1M]
 gi|170144423|gb|EDT12585.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           graminis C4D1M]
          Length = 410

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 98/243 (40%), Gaps = 15/243 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S  V+D     +   KQ +   P AS++K+MT  +  +   +    LN  + V     
Sbjct: 169 ARSVFVVDERTQTVLTEKQADRVMPIASVSKLMTAVVALDTRHALDAPLN--VTVQDQDF 226

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   S+  L   +  +    +   +  S N  + A     +G    F   M+ KA+ +G
Sbjct: 227 DKFTGSR--LSVGSVLSRHDMLHIALMSSENRAAAALSRDYAGGRPGFVAAMNAKARALG 284

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR-KFRYRNR-----II 224
           M++T + N +GL   + ++TARD A L     + +P    Y + R ++ +          
Sbjct: 285 MRHTSFVNGTGLS-PHNVSTARDLARLVAAASR-YPLIRAYSTDRDQWVFPGGPRARLSY 342

Query: 225 TNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            N N L+     +I   KTG+   +G  +V  +     PI  VV+G P   +     + +
Sbjct: 343 HNSNALVRSGDRSIVLQKTGFINEAGHCVVVRMIVHGRPIDIVVLGAPGPHDHIADVIRI 402

Query: 284 ITS 286
              
Sbjct: 403 RRW 405


>gi|288941902|ref|YP_003444142.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Allochromatium
           vinosum DSM 180]
 gi|288897274|gb|ADC63110.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Allochromatium
           vinosum DSM 180]
          Length = 353

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 102/247 (41%), Gaps = 18/247 (7%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++++D  +  +   K     R  AS+TK+MT  ++ +      + L T I + +   
Sbjct: 105 SVSAMIVD-ERGNVLYSKNARAVRPIASITKLMTAMVVLDTG----VSLKTPIRIVEDDR 159

Query: 112 TQ-NPSKLYLKEKTYF-TTEQGILALITRSANDVSTAFGE-FISGSEKKFAILMSNKAKK 168
            +   S+  L+      +  + I+  I  S N  + A G     G   +F   M+ KA+ 
Sbjct: 160 DRLKNSRSRLRINDTVLSRREMIMVAIMSSDNRAAHALGRTTFRGGTPEFIQAMNRKARA 219

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI----- 223
           +GM+NT + ++SGL  +NQ +TA D   +      N+P  ++  ++ +   R        
Sbjct: 220 LGMRNTRFVDSSGLDPRNQ-STAEDLVKMVRAAS-NYPLLHEITALGQMTLRPFSDGTAL 277

Query: 224 -ITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
              N N L+      ++  KTG+   +G  +V   R  +  +  V +G          + 
Sbjct: 278 QYRNTNPLVRSPEWTVEVSKTGFINEAGRCLVMRARIDNRSLYMVFLGSNGKLSTVGDSN 337

Query: 282 ELITSFL 288
            +    L
Sbjct: 338 RVRDWIL 344


>gi|53718694|ref|YP_107680.1| murein-DD-endopeptidase [Burkholderia pseudomallei K96243]
 gi|126441783|ref|YP_001058168.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 668]
 gi|167814810|ref|ZP_02446490.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 91]
 gi|254260216|ref|ZP_04951270.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1710a]
 gi|52209108|emb|CAH35050.1| murein-DD-endopeptidase [Burkholderia pseudomallei K96243]
 gi|126221276|gb|ABN84782.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           668]
 gi|254218905|gb|EET08289.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1710a]
          Length = 378

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 105/267 (39%), Gaps = 28/267 (10%)

Query: 40  IMISMASELHAKPKYSSI-----------VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLY 87
           ++ +   +L A+  Y++            V+D     +   +      P AS+TK+MT  
Sbjct: 114 VVAAAKPQLLARCGYTAASRHLLRSRAIYVVDERTGTVLIERNANRVMPIASVTKLMTSM 173

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVS 144
           +  +     +  ++  + VS           S+  LK  +  +    +   +  S N  +
Sbjct: 174 VALD----TRAPMSRPLRVSAQDRDYEKFTGSR--LKVGSVLSRRDMLHIALMSSENRAA 227

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A      G    F   M+ KA+ +GM+ T + NA+GL     ++TARD + L     + 
Sbjct: 228 AALSRDYPGGRPAFVAAMNRKARTLGMKRTHFVNATGLS-PRNVSTARDLSRLVAAASR- 285

Query: 205 FPQYYKYFS-IRKFRYRNRII---TNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           +P+   + +   K  +  R      N + L+     +I   KTG+   +G  +V     +
Sbjct: 286 YPRIKTFSTATSKTVFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVR 345

Query: 260 DDPIVAVVMGMPTSQERDQKALELITS 286
             P+  V++G P   +    A ++   
Sbjct: 346 GRPVDIVLLGAPGPHDHVADAAKIRRW 372


>gi|167901817|ref|ZP_02489022.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 378

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 105/267 (39%), Gaps = 28/267 (10%)

Query: 40  IMISMASELHAKPKYSSI-----------VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLY 87
           ++ +   +L A+  Y++            V+D     +   +      P AS+TK+MT  
Sbjct: 114 VVAAAKPQLLARCGYTAASRHLLRSRAIYVVDERTGTVLIERNANRVMPIASVTKLMTSM 173

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVS 144
           +  +     +  ++  + VS           S+  LK  +  +    +   +  S N  +
Sbjct: 174 VALD----TRAPMSRPLRVSAQDRDYEKFTGSR--LKVGSVLSRRDMLHIALMSSENRAA 227

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A      G    F   M+ KA+ +GM+ T + NA+GL     ++TARD + L     + 
Sbjct: 228 AALSRDYPGGRPAFVAAMNRKARTLGMKRTHFVNATGLS-PRNVSTARDLSRLVAAASR- 285

Query: 205 FPQYYKYFS-IRKFRYRNRII---TNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           +P+   + +   K  +  R      N + L+     +I   KTG+   +G  +V     +
Sbjct: 286 YPRIKTFSTATSKTVFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVR 345

Query: 260 DDPIVAVVMGMPTSQERDQKALELITS 286
             P+  V++G P   +    A ++   
Sbjct: 346 GRPVDIVLLGAPGPHDHVADAAKIRRW 372


>gi|325662481|ref|ZP_08151084.1| hypothetical protein HMPREF0490_01824 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471177|gb|EGC74402.1| hypothetical protein HMPREF0490_01824 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 451

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 69/321 (21%), Positives = 130/321 (40%), Gaps = 43/321 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +P  S I+ +++  Q+   +  D    PAS+TK+MT+ + ++ ++  K   + Q+ V++ 
Sbjct: 65  QPAGS-IITEIHTGQILWEENKDVSWAPASMTKLMTILLAYDAMEEGKFEKDMQVAVNEK 123

Query: 110 ----AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
               A     S   ++    +T  + I  +I  S+   +    + +     KF  LM+ K
Sbjct: 124 YTDIAGRYALSNNVMQMGATYTVGELIDLIIVPSSAAATYMLADLVEPDPDKFVALMNQK 183

Query: 166 AKKIGMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKY 211
           AK+IGM +T Y N  G+               D + +T+ +D A+L     K +P    +
Sbjct: 184 AKEIGMTHTTYYNCVGVTNDLLYPYAPKNLPADADNVTSPQDYALLCSYFVKTYPDILTH 243

Query: 212 FSIRKFRYRNRIITNHNKLLNKM-----------HNIDGIKTGYTRNSGFNIVTSLRYKD 260
            S  +   +       +                    DG+KTG +  +GFN  ++ + +D
Sbjct: 244 TSSPEIVVKEGTPYEEH--FKSYQISLEGAKYGLKGTDGLKTGSSGRAGFNYSSTAKRQD 301

Query: 261 DPIVAVVMGMPTSQERDQKALE------LITSFLEKKTLKH---QQTHRKDNLSSTSLKK 311
             +V +VMG+    ++  + L       ++    EK   +    + TH+         KK
Sbjct: 302 TRLVEIVMGVSDWTDQTGEELRHLVGNAIMEQAFEKYEYRKVLPKGTHQIGK-EKIVTKK 360

Query: 312 SLMIKKLKRTYSQFKKIDAKA 332
            L     K    +FK  D K 
Sbjct: 361 DLWDCVPKEEKVKFKMEDGKV 381


>gi|331086263|ref|ZP_08335343.1| hypothetical protein HMPREF0987_01646 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406029|gb|EGG85552.1| hypothetical protein HMPREF0987_01646 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 445

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 69/321 (21%), Positives = 130/321 (40%), Gaps = 43/321 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +P  S I+ +++  Q+   +  D    PAS+TK+MT+ + ++ ++  K   + Q+ V++ 
Sbjct: 57  QPAGS-IITEIHTGQILWEENKDVSWAPASMTKLMTILLAYDAMEEGKFEKDMQVAVNEK 115

Query: 110 ----AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
               A     S   ++    +T  + I  +I  S+   +    + +     KF  LM+ K
Sbjct: 116 YTDIAGRYALSNNVMQMGATYTVGELIDLIIVPSSAAATYMLADLVEPDPDKFVALMNQK 175

Query: 166 AKKIGMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKY 211
           AK+IGM +T Y N  G+               D + +T+ +D A+L     K +P    +
Sbjct: 176 AKEIGMTHTTYYNCVGVTNDLLYPYAPKNLPADADNVTSPQDYALLCSYFVKTYPDILTH 235

Query: 212 FSIRKFRYRNRIITNHNKLLNKM-----------HNIDGIKTGYTRNSGFNIVTSLRYKD 260
            S  +   +       +                    DG+KTG +  +GFN  ++ + +D
Sbjct: 236 TSSPEIVVKEGTPYEEH--FKSYQISLEGAKYGLKGTDGLKTGSSGRAGFNYSSTAKRQD 293

Query: 261 DPIVAVVMGMPTSQERDQKALE------LITSFLEKKTLKH---QQTHRKDNLSSTSLKK 311
             +V +VMG+    ++  + L       ++    EK   +    + TH+         KK
Sbjct: 294 TRLVEIVMGVSDWTDQTGEELRHLVGNAIMEQAFEKYEYRKVLPKGTHQIGK-EKIVTKK 352

Query: 312 SLMIKKLKRTYSQFKKIDAKA 332
            L     K    +FK  D K 
Sbjct: 353 DLWDCVPKEEKIKFKMEDGKV 373


>gi|333026337|ref|ZP_08454401.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces sp.
           Tu6071]
 gi|332746189|gb|EGJ76630.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces sp.
           Tu6071]
          Length = 858

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 67/279 (24%), Positives = 127/279 (45%), Gaps = 20/279 (7%)

Query: 46  SELHAKPKYSSIVIDVNK-NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKK------L 98
           +     PK     +DV+           +P   AS+ K+MT Y++      KK      +
Sbjct: 499 AAPMPWPKSGQAAMDVDGLGSFGSSGAQKPVPIASVAKVMTAYLVLRDHPVKKGGDGASI 558

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            ++ +       + QN S + ++     + ++ I A++  SAN+++     + +GSEK F
Sbjct: 559 TMDQKAEDDAGLSAQNESTVDVRAGQKLSQKEAIEAIMLASANNIARQLARWDAGSEKDF 618

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF- 217
              M+  A ++GM+NT Y + SGL +K  ++TA DQ  LG +  K+ P + +   +  + 
Sbjct: 619 VAKMNKAADELGMKNTTYTDPSGL-NKTTVSTAEDQVKLGKVAMKD-PLFREVVRMPAYV 676

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY--KD--DPIVAVVMGMPTS 273
               +  TN N+L+  M+N  GIKTG T  +G N++ +           IV  V+  P +
Sbjct: 677 DSNGKTQTNWNRLV-PMNNTVGIKTGTTTAAGGNLLYAATKEVGGTTRTIVGAVLAQPPA 735

Query: 274 QERDQKALELITSF-----LEKKTLKHQQTHRKDNLSST 307
            E +      + +        + TL  ++  +K ++  +
Sbjct: 736 PEDNSILTGALNAGKALIEAAQGTLVAEKVVKKGDVVGS 774


>gi|312867918|ref|ZP_07728122.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis F0405]
 gi|311096322|gb|EFQ54562.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis F0405]
          Length = 437

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 61/308 (19%), Positives = 125/308 (40%), Gaps = 49/308 (15%)

Query: 24  IQRNI-QLMGKILFLSIIMISMASELHAKP---KYSS---------------IVIDVNKN 64
           ++RN+  L+  +L    I  + A +++ +    K ++               IVID N  
Sbjct: 11  LKRNLLSLLVGVLAFGPISTAFADDIYQQEDVMKIAADAGLVLDDFYKPKADIVIDANTG 70

Query: 65  QMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT--AATQNP--SKLY 119
            +      D  R   S+ K+M+ Y++F  L+  K+  +T I  ++   A ++N   S   
Sbjct: 71  AILYGDNIDTVRDSGSMAKLMSAYVVFRALKEGKIKYDTVITATEADQAISENNLLSNSP 130

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKN 178
           +     +   + I  L   S++         ++ ++  KF  LM+  A+++GM +T + N
Sbjct: 131 IVAGVDYKVSELIKMLFVPSSSAAVIMLANAVTDNDPDKFLDLMNQYAQEMGMSHTKWHN 190

Query: 179 ASGLH---------------DKNQITTARDQAILGILLRKNFPQYYKY-----FSIRKFR 218
            +G                 + N   TARD +IL   +  + P+  +Y      +I +  
Sbjct: 191 PNGAMISVLQGYYNPQRYDVNANNEITARDMSILAYHIVNDLPEMLEYTKQAHTTIMEGT 250

Query: 219 YRNRIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
              +   N+N  L      +   DG+KTG +  + +N   + +     I+ V++G+    
Sbjct: 251 PYEQSYDNYNTSLEGGKFALKGTDGLKTGSSPTADYNYTATTKRGKQRIIEVILGVGNYD 310

Query: 275 ERDQKALE 282
               ++  
Sbjct: 311 VEIAESYR 318


>gi|167718649|ref|ZP_02401885.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei DM98]
          Length = 378

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 105/267 (39%), Gaps = 28/267 (10%)

Query: 40  IMISMASELHAKPKYSSI-----------VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLY 87
           ++ +   +L A+  Y++            V+D     +   +      P AS+TK+MT  
Sbjct: 114 VVAAAKPQLLARCGYTAASRHLLRSRAIYVVDERTGTVLIERNANRVMPIASVTKLMTSM 173

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVS 144
           +  +     +  ++  + VS           S+  LK  +  +    +   +  S N  +
Sbjct: 174 VALD----TRAPMSRPLRVSAQDRDYEKFTGSR--LKVGSVLSRRDMLHIALMSSENRAA 227

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A      G    F   M+ KA+ +GM+ T + NA+GL     ++TARD + L     + 
Sbjct: 228 AALSRDYPGGRPAFVAAMNRKARTLGMKRTHFVNATGLS-PRNVSTARDLSRLVAAASR- 285

Query: 205 FPQYYKYFS-IRKFRYRNRII---TNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           +P+   + +   K  +  R      N + L+     +I   KTG+   +G  +V     +
Sbjct: 286 YPRIKTFSTATSKTVFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVR 345

Query: 260 DDPIVAVVMGMPTSQERDQKALELITS 286
             P+  V++G P   +    A ++   
Sbjct: 346 GRPVDIVLLGAPGPHDHVADAAKIRRW 372


>gi|53724420|ref|YP_104522.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei ATCC 23344]
 gi|121598323|ref|YP_992318.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei SAVP1]
 gi|124386019|ref|YP_001028989.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei NCTC 10229]
 gi|126449096|ref|YP_001081092.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei NCTC 10247]
 gi|126451732|ref|YP_001065404.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106a]
 gi|166999947|ref|ZP_02265776.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei PRL-20]
 gi|167744606|ref|ZP_02417380.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 14]
 gi|167823267|ref|ZP_02454738.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 9]
 gi|167844811|ref|ZP_02470319.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei B7210]
 gi|167910041|ref|ZP_02497132.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 112]
 gi|217419635|ref|ZP_03451141.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           576]
 gi|226194446|ref|ZP_03790044.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|237811386|ref|YP_002895837.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei MSHR346]
 gi|238563378|ref|ZP_00438972.2| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei GB8 horse 4]
 gi|254178365|ref|ZP_04885020.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei ATCC 10399]
 gi|254181346|ref|ZP_04887943.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1655]
 gi|254197054|ref|ZP_04903478.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei S13]
 gi|254201603|ref|ZP_04907967.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei FMH]
 gi|254206936|ref|ZP_04913287.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei JHU]
 gi|254357915|ref|ZP_04974188.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei 2002721280]
 gi|52427843|gb|AAU48436.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei ATCC 23344]
 gi|121227133|gb|ABM49651.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei SAVP1]
 gi|124294039|gb|ABN03308.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia mallei NCTC
           10229]
 gi|126225374|gb|ABN88914.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1106a]
 gi|126241966|gb|ABO05059.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia mallei NCTC
           10247]
 gi|147747497|gb|EDK54573.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei FMH]
 gi|147752478|gb|EDK59544.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei JHU]
 gi|148027042|gb|EDK85063.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei 2002721280]
 gi|160699404|gb|EDP89374.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei ATCC 10399]
 gi|169653797|gb|EDS86490.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei S13]
 gi|184211884|gb|EDU08927.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 1655]
 gi|217396939|gb|EEC36955.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
           576]
 gi|225933531|gb|EEH29520.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|237505712|gb|ACQ98030.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei MSHR346]
 gi|238520825|gb|EEP84282.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei GB8 horse 4]
 gi|243064065|gb|EES46251.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           mallei PRL-20]
          Length = 378

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 105/267 (39%), Gaps = 28/267 (10%)

Query: 40  IMISMASELHAKPKYSSI-----------VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLY 87
           ++ +   +L A+  Y++            V+D     +   +      P AS+TK+MT  
Sbjct: 114 VVAAAKPQLLARCGYTAASRHLLRSRAIYVVDERTGTVLIERNANRVMPIASVTKLMTSM 173

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVS 144
           +  +     +  ++  + VS           S+  LK  +  +    +   +  S N  +
Sbjct: 174 VALD----TRAPMSRPLRVSAQDRDYEKFTGSR--LKVGSVLSRRDMLHIALMSSENRAA 227

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A      G    F   M+ KA+ +GM+ T + NA+GL     ++TARD + L     + 
Sbjct: 228 AALSRDYPGGRPAFVAAMNRKARTLGMKRTHFVNATGLS-PRNVSTARDLSRLVAAASR- 285

Query: 205 FPQYYKYFS-IRKFRYRNRII---TNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           +P+   + +   K  +  R      N + L+     +I   KTG+   +G  +V     +
Sbjct: 286 YPRIKTFSTATSKTVFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVR 345

Query: 260 DDPIVAVVMGMPTSQERDQKALELITS 286
             P+  V++G P   +    A ++   
Sbjct: 346 GRPVDIVLLGAPGPHDHVADAAKIRRW 372


>gi|302557055|ref|ZP_07309397.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus
           Tu4000]
 gi|302474673|gb|EFL37766.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus
           Tu4000]
          Length = 381

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 98/264 (37%), Gaps = 24/264 (9%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLN 101
             A E+      S +V D     +        R  PAS  K +    +   L +   H  
Sbjct: 58  PGAPEVPEVSALSWLVADARTGDVPAAHDAHRRLPPASTLKTLFALTVLPALPAGIRH-- 115

Query: 102 TQIPVSKT---AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
               VS+          S + + E   +        +   S ND        +SG  +  
Sbjct: 116 ---RVSERELADIGPGSSLVGVAEDRAYRVSDLWNGVFLSSGNDAVRVLA-TLSGGWRAT 171

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           A  M  +A+ +G ++T  K+  G     Q+++A D A+ G    +N  ++ +Y +  + R
Sbjct: 172 AERMQAEARALGARDTRVKSPDGYDTPGQVSSAFDLAVFGRAGLRNA-EFARYCARHEAR 230

Query: 219 Y-----RNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           +      +  I N N+LL           + GIK GYT N+G  +V + R     +V  V
Sbjct: 231 FPARDGGSFGIVNTNRLLTGADGVEAYDGLVGIKNGYTSNAGNTLVAAARRDGHTLVVTV 290

Query: 268 MGMPTSQERD--QKALELITSFLE 289
           M   +       ++A  L+    E
Sbjct: 291 MNPQSGGGHAVYEEARSLLDWGFE 314


>gi|332639010|ref|ZP_08417873.1| D-alanyl-D-alanine carboxypeptidase [Weissella cibaria KACC 11862]
          Length = 421

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 133/299 (44%), Gaps = 27/299 (9%)

Query: 30  LMGKILFLSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLY 87
           L G +L   I   + A+ +  K    S++V DV   Q+   K  +E    AS++K++T+Y
Sbjct: 10  LAGILLVTGIATSASAATVTPKVDAQSAVVADVQTGQVLADKNGNERMPIASISKLLTVY 69

Query: 88  IIFEYLQSKKLHLNTQIPV--SKTAATQNP--SKLYLKEKTYFTTEQGILALITRSANDV 143
           ++ + ++  +L + +QI V  S  A +  P  + + L  +  +T ++ +   + +SAN  
Sbjct: 70  LVEQAIKEGRLSMQSQIKVPASIVAISNEPALANVPLSTERAYTIQELMEMALIKSANAA 129

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--------------QIT 189
           + A G  +SG++      + +     G+++T   + +GL + +                 
Sbjct: 130 ALALGYAVSGTDTGVNQQIQDLLTSWGIKDTTIVSGAGLTNGDMGALTNPKLGADVENEL 189

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFR-----YRNRIITNHNKLL--NKMHNIDGIKT 242
           +AR+ AI+G  L  ++P+  +  S++             I N +KLL   + +   G+KT
Sbjct: 190 SARELAIVGRHLVTDYPEIQQITSMQTAEVPSGATGTETIENSDKLLADGQGYKFTGLKT 249

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRK 301
           GY  +     +     +   +V VV+G   +  +    L  + S +  KTL      ++
Sbjct: 250 GYALSVHSTFIGLTTLEGRQVVTVVLGSDHTFSQTVAMLNAVKSAMTVKTLAKGTVIQR 308


>gi|7766852|pdb|1ES3|A Chain A, C98a Mutant Of Streptomyces K15 Dd-Transpeptidase
          Length = 262

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 93/262 (35%), Gaps = 28/262 (10%)

Query: 51  KPKYSSI---VIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
           KP  +++    ++         K  D  R   S TK+MT  ++        L+L+ ++ +
Sbjct: 3   KPTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVL---AQSNLNLDAKVTI 59

Query: 107 ----SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS------EK 156
               S      N S+ +L      T  Q +  L+  S  D + A  +            K
Sbjct: 60  QKAYSDYVVANNASQAHLIVGDKVTVRQLLYGLMLPSGADAAYALADKYGSGSTRAARVK 119

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F   M+  A  +G+ NT + +  G+ +    +T RD   +     KN   +      + 
Sbjct: 120 SFIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLTKIASSAMKNS-TFRTVVKTKA 178

Query: 217 FRYRNRI----------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           +  +               N N LL+      G+KTG    + + +V +       ++  
Sbjct: 179 YTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGT 238

Query: 267 VMGMPTSQERDQKALELITSFL 288
           V+   +   R+  A +++    
Sbjct: 239 VLASTSIPARESDATKIMNYGF 260


>gi|90578556|ref|ZP_01234366.1| Hypothetical D-alanyl-D-alanine endopeptidase [Vibrio angustum S14]
 gi|90439389|gb|EAS64570.1| Hypothetical D-alanyl-D-alanine endopeptidase [Vibrio angustum S14]
          Length = 298

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 99/262 (37%), Gaps = 26/262 (9%)

Query: 32  GKILFLSIIMISMASELH-----------AKPKYSSIVIDVNKNQMTGFKQDE-PRYPAS 79
             ILF ++  IS +S                   S+ VID++  +    K        AS
Sbjct: 4   AFILFFTLASISFSSMASINTSKLDPNKLQTASVSNYVIDLSTGKTLYKKNSNVKMPIAS 63

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLYLKEKTYFTTEQGILALITR 138
           LTK+MT  +  +     KL LN ++  + T       +   ++  +  +  + I   +  
Sbjct: 64  LTKLMTAMVTLDA----KLPLNEKLTFTPTDKERMYNTYTRIRMGSTLSRGETIHIALMS 119

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S N  +        G  + F   M+ KAK +GM NT + ++SGL   N  +TA D A + 
Sbjct: 120 SENLAAATLAGNYPGGYEAFIKAMNRKAKSLGMTNTHFVDSSGLDPHNH-STASDVAKMV 178

Query: 199 ILLRKNFPQYYKYFSIRKFRY------RNRIITNHNKL-LNKMHNIDGIKTGYTRNSGFN 251
               K +P+  KY +                 TN N L   K   ++  KTGY   +G  
Sbjct: 179 RAAYK-YPEIRKYSTSPVHTAYFGKPSYKLGYTNTNALARGKKWTVNLTKTGYLDEAGRC 237

Query: 252 IVTSLRYKDDPIVAVVMGMPTS 273
           +          I+ V++     
Sbjct: 238 LGMVTTIDGKRILMVMLDSQGK 259


>gi|7766851|pdb|1ES2|A Chain A, S96a Mutant Of Streptomyces K15 Dd-Transpeptidase
          Length = 262

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 93/262 (35%), Gaps = 28/262 (10%)

Query: 51  KPKYSSI---VIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
           KP  +++    ++         K  D  R   S TK+MT  ++        L+L+ ++ +
Sbjct: 3   KPTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVL---AQSNLNLDAKVTI 59

Query: 107 ----SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS------EK 156
               S      N S+ +L      T  Q +  L+  +  D + A  +            K
Sbjct: 60  QKAYSDYVVANNASQAHLIVGDKVTVRQLLYGLMLPAGCDAAYALADKYGSGSTRAARVK 119

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F   M+  A  +G+ NT + +  G+ +    +T RD   +     KN   +      + 
Sbjct: 120 SFIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLTKIASSAMKNS-TFRTVVKTKA 178

Query: 217 FRYRNRI----------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           +  +               N N LL+      G+KTG    + + +V +       ++  
Sbjct: 179 YTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGT 238

Query: 267 VMGMPTSQERDQKALELITSFL 288
           V+   +   R+  A +++    
Sbjct: 239 VLASTSIPARESDATKIMNYGF 260


>gi|239929347|ref|ZP_04686300.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
           14672]
 gi|291437677|ref|ZP_06577067.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
           14672]
 gi|291340572|gb|EFE67528.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
           14672]
          Length = 429

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 58/284 (20%), Positives = 102/284 (35%), Gaps = 31/284 (10%)

Query: 32  GKILFLSIIMISMASELHAKPK----YSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTL 86
           G  L L    + +A      PK     S IV D    ++        R  PAS  KM+  
Sbjct: 52  GARLGLPGTQVDLAGGAPVLPKDLSARSWIVADAESGEVLAAHNAHWRLAPASTLKMLFA 111

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-YLKEKTYFTTEQGILALITRSANDVST 145
             +             ++ VS  A     S +  +KE+  +T     L +  RS ND   
Sbjct: 112 DTLLPKWPK---STEHRVEVSDMAGVGPGSSMVGIKEEETYTVHDLWLGVFLRSGNDAVH 168

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI--LLRK 203
                ++G  +K    M+  A+++   +T   +  G   + Q+++A D  ++    L +K
Sbjct: 169 VL-SAMNGGVEKTVEEMNEHAEELQALDTHVVSPDGYDAEGQVSSAYDLTLIARSGLQKK 227

Query: 204 NFPQYYKYFSIR-----------KFRYRNRIITNHNKLLNK------MHNIDGIKTGYTR 246
           +F +Y    S++           K    +  I N N+LL           I G+K G T 
Sbjct: 228 DFREYCSTVSVKFPGETKKNKKGKEVRGSFEIQNTNRLLVGAYDVPVYEGIAGVKNGNTT 287

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERD--QKALELITSFL 288
           N+G             ++  VM     +     ++  +L+    
Sbjct: 288 NAGATFTGVAERDGKVLLVTVMNPEKDKGNAVYKETAKLLDWGF 331


>gi|317124333|ref|YP_004098445.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Intrasporangium calvum DSM 43043]
 gi|315588421|gb|ADU47718.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Intrasporangium calvum DSM 43043]
          Length = 898

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 102/264 (38%), Gaps = 22/264 (8%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLH 99
           + + A      P  S ++ D++  ++   K       PAS  K +T   +   L   +  
Sbjct: 114 VPAGAHRPPPVPDVSYVLADLDTGEVLAAKSPHAWLRPASTLKTLTALALIPRLDPARRV 173

Query: 100 LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
           L T    S+  A  + +++ +     +       AL+  SAND +    +   G E+   
Sbjct: 174 LAT----SEHEAA-DGTRVGILAGNRYPVSTLFDALLLSSANDAAYLLADAAGGYEQT-V 227

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--- 216
            LM+  A  +G  +T+  + SGL +  Q ++A D A++G    +  P +  Y S R    
Sbjct: 228 SLMNETAVGLGAHDTVAVDPSGLDEDGQHSSAYDLALIGRAAMR-LPTFRSYVSKRDAAF 286

Query: 217 ---------FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
                      YR+  I N N+LL +     GIK G T  +    + +       ++   
Sbjct: 287 PGGTNRATGTVYRSFQIQNINELLGRYPGAIGIKPGRTNRAQHTFIGAATRAGRTLIVTQ 346

Query: 268 MGMPTSQERDQKALELITSFLEKK 291
           MG  T   +D  A  L+       
Sbjct: 347 MGSTTGDWKDTAA--LLDWGFANA 368


>gi|157370801|ref|YP_001478790.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Serratia
           proteamaculans 568]
 gi|157322565|gb|ABV41662.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Serratia
           proteamaculans 568]
          Length = 320

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 62/276 (22%), Positives = 114/276 (41%), Gaps = 32/276 (11%)

Query: 29  QLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMM 84
           +  G IL L+++ I  A++  A       S +V++    ++   KQ     P ASLTK+M
Sbjct: 56  RRFGAILVLTLLFILPAAQAAAPLALYSKSVLVVNQRTGKILYQKQANRVQPIASLTKLM 115

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSAN 141
           T  +  +     K  L  ++ V+  AA ++    +   L   +  +    +   +  S N
Sbjct: 116 TAMVTLDS----KRPLGNRMMVT--AADRDLLKKTHSRLTIGSTLSRRDMLHIALMSSEN 169

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
             ++A      G  K F   M+ KA+ IGM++  + + +GL     + +A D   +    
Sbjct: 170 RAASALSRNYPGGRKAFVAKMNQKARTIGMKHARFYDPTGLT-PRNVASANDLLKMVNHA 228

Query: 202 RKNFPQYYKYFSIRKFRYRNR----------IITNHNKLLNK-MHNIDGIKTGYTRNSGF 250
                  Y+Y +IR+F    +          +  + N L+N     I   KTG+T  +G 
Sbjct: 229 -------YRYQTIRRFSTDKQQIVRPGRGQLVYRSSNGLINNPTWKIQLQKTGFTDEAGH 281

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            +V     K  P+V +++G        + A+ L   
Sbjct: 282 CLVMRTLIKGQPVVIILLGSKQRYGHYKDAIRLKAW 317


>gi|302670839|ref|YP_003830799.1| D-alanyl-D-alanine carboxypeptidase DacA2 [Butyrivibrio
           proteoclasticus B316]
 gi|302395312|gb|ADL34217.1| D-alanyl-D-alanine carboxypeptidase DacA2 [Butyrivibrio
           proteoclasticus B316]
          Length = 329

 Score =  162 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 58/255 (22%), Positives = 110/255 (43%), Gaps = 23/255 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+ + D+   +    +  ++   PASLTK+MT Y+  +Y   +++     +  S    
Sbjct: 80  SVSAGLFDLTNRETLFAQNVNDRVMPASLTKVMTAYVALKYGSLEQV----LVAGSDVYV 135

Query: 112 TQNPS-KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            ++ + K+ LKE    T +Q +  L+  SANDV+      ISGS ++F   M+ +A  IG
Sbjct: 136 NESGAQKIGLKEGDRMTLDQALHILLIYSANDVANLIASNISGSIEEFVNTMNAEAYAIG 195

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY---------RN 221
              T ++N +GL       TA D  ++     + +  + +  ++  +           ++
Sbjct: 196 ATKTHFENPNGLTSDEHYVTAYDMYLIFNAAMQ-YDTFSEIINMNSYTTSYIDATGASKD 254

Query: 222 RIITNHNKLLNKMH------NIDGIKTGYTRNSGFNIVTSLRY-KDDPIVAVVMGMPTSQ 274
             I+N N  L           + G KTG T+ +G  ++   R    +P +AV+M    S 
Sbjct: 255 VDISNTNGFLTGAKPVPSGVTVIGGKTGTTQAAGHCLILLARDTAGNPYIAVIMRDTDSG 314

Query: 275 ERDQKALELITSFLE 289
                  +L+   + 
Sbjct: 315 TLYNDMAQLLNEIVN 329


>gi|325982954|ref|YP_004295356.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Nitrosomonas
           sp. AL212]
 gi|325532473|gb|ADZ27194.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Nitrosomonas
           sp. AL212]
          Length = 275

 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 56/266 (21%), Positives = 102/266 (38%), Gaps = 19/266 (7%)

Query: 31  MGKILFLSIIMISMASELHAKP------KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKM 83
           M ++  LS I+        A+         +++V +     +   K  +   P AS+TK+
Sbjct: 1   MKQVFILSCILFFYTGSSLAQKNNPDIKSQAALVFNAQNEYVIYDKNADKVMPIASITKL 60

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSAND 142
           MT  +  +     +L  N  I +      +   +   L   +  +  + +   +  S N 
Sbjct: 61  MTAIVTLDA----RLSPNEIITIENADVDKLKYTTSRLPVGSKLSRHELLKLSLMSSENR 116

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL-- 200
            + A G    G  + F   M+ KAK++GM ++ +   +GL   N + TARD A L     
Sbjct: 117 AAAALGRTYPGGTQAFVNAMNIKAKQMGMISSRFVEPTGLS-SNNVATARDLAKLVAASN 175

Query: 201 ---LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSL 256
              + + F    ++      +       N N L+  +   ID  KTGY   +G  +V   
Sbjct: 176 RYTVIREFSTASQHSVSPGNKRGQLQYVNSNSLVRSQNWTIDVSKTGYLNEAGRCLVMHA 235

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALE 282
           +    P+V V++       R   A  
Sbjct: 236 KISGQPVVIVLLNSWGKNTRIGDANR 261


>gi|322390800|ref|ZP_08064310.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis ATCC 903]
 gi|321142470|gb|EFX37938.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
           parasanguinis ATCC 903]
          Length = 440

 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 56/262 (21%), Positives = 110/262 (41%), Gaps = 31/262 (11%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           KPK + IVID N   +      D  R   S+ K+M+ Y++F  L+  K+  +T +  ++ 
Sbjct: 61  KPK-ADIVIDANTGAILYGDNIDTVRDSGSMAKLMSAYVVFRALKEGKIKYDTVVTATEA 119

Query: 110 --AATQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSN 164
             A ++N   S   +     +   + I  L   S++         ++ ++  KF  LM+ 
Sbjct: 120 DQAISENNLLSNSPIVAGVDYKVSELIKMLFVPSSSAAVIMLANAVTDNDPDKFLDLMNQ 179

Query: 165 KAKKIGMQNTIYKNASGLH---------------DKNQITTARDQAILGILLRKNFPQYY 209
            A+++GM +T + N +G                 + N   TARD +IL   +  + P+  
Sbjct: 180 YAQEMGMSHTKWHNPNGAMISVLQGYYNPQRYDVNANNEITARDMSILAYHIVNDLPEML 239

Query: 210 KY-----FSIRKFRYRNRIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           +Y      +I +     +   N+N  L      +   DG+KTG +  + +N   + +   
Sbjct: 240 EYTKQAHTTIMEGTPYEQSYDNYNTSLEGGKFALKGTDGLKTGSSPTADYNYTATTKRGK 299

Query: 261 DPIVAVVMGMPTSQERDQKALE 282
             I+ V++G+        ++  
Sbjct: 300 QRIIEVILGVGNYDVEIAESYR 321


>gi|187477411|ref|YP_785435.1| D-alanyl-D-alanine carboxypeptidase [Bordetella avium 197N]
 gi|115421997|emb|CAJ48519.1| probable D-alanyl-D-alanine carboxypeptidase [Bordetella avium
           197N]
          Length = 409

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 97/235 (41%), Gaps = 13/235 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ- 113
           + V D+  + +   K +   R  AS++K+MT  ++ +  Q     +N  + V+       
Sbjct: 170 AYVQDLTTSTVLFAKNENVVRPIASISKLMTALVVVDANQP----MNEILEVTDEDIDTL 225

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             +   L+  T  +    +   +  S N  + A G    G  + F   M+ KA+ +GM N
Sbjct: 226 KHTTSRLRVGTRLSRGDMLHLALMSSENRAAHALGRNYPGGLEAFVAAMNAKARSLGMIN 285

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNK 229
           T +   +GL  +N +++  D A L     +  P  ++Y +  ++      R +   N N 
Sbjct: 286 TRFVEPTGLSSEN-VSSPHDLARLLRAASQR-PLIHRYSTDTEYDVEINKRTQTFRNTNL 343

Query: 230 LLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           L+ K   +I   KTG+   +G  +V   R     +  V++       R   A+ +
Sbjct: 344 LVRKPDWDIKVSKTGFINEAGECLVMLARINGRDMAIVLLDSQGKLSRIGDAMRI 398


>gi|167580237|ref|ZP_02373111.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis TXDOH]
          Length = 355

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 53/268 (19%), Positives = 105/268 (39%), Gaps = 28/268 (10%)

Query: 39  IIMISMASELHAKPKYSSI-----------VIDVNKNQMTGFKQDEPRYP-ASLTKMMTL 86
            ++ +   +L A+  Y++            V+D     +   +      P AS+TK+MT 
Sbjct: 90  AVVAAAKPQLLARCGYTAASRHLLRSRAIYVVDERTGTVLIERNANRVVPIASVTKLMTS 149

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDV 143
            +  +     +  ++  + VS           S+  LK  +       +   +  S N  
Sbjct: 150 MVALD----TRAPMSRPLRVSAQDRDYEKFTGSR--LKVGSVLPRRDMLHIALMSSENRA 203

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           + A      G    F   M+ KA+ +GM++T + NA+GL     ++TARD + L     +
Sbjct: 204 AAALSRDYPGGRPAFVAAMNRKARTLGMKHTHFVNATGLS-PRNVSTARDLSRLVAAASR 262

Query: 204 NFPQYYKYFS-IRKFRYRNRII---TNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY 258
            +P    + +   K  +  R      N + L+     +I   KTG+   +G  +V     
Sbjct: 263 -YPHIKSFSTDTSKTVFPGRGQLHYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAV 321

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITS 286
           +  P+  V++G P  ++    A ++   
Sbjct: 322 RGRPVDIVLLGAPGPRDHVADAAKIRRW 349


>gi|313472221|ref|ZP_07812713.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
           1153]
 gi|313449097|gb|EEQ68608.2| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
           1153]
          Length = 313

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 121/297 (40%), Gaps = 34/297 (11%)

Query: 58  VIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-- 114
           ++D    Q+   +    +Y  ASLTK++TL +I E +   KL  + +I +SK  A     
Sbjct: 1   MMDEKTGQILYQRNATKKYAVASLTKILTLAVIMEDIHKHKLDWDQEIQISKDVAKVADD 60

Query: 115 --PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S + L     +T    I +++  SA+  + A     +GS   F   M   AK+ G++
Sbjct: 61  WHFSNVPLVYNERYTVRSLIESMMIVSADGSTEALALADAGSVAAFNYKMKVVAKRAGVK 120

Query: 173 NTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
           N    N  GL               ++    +A+D A++   L   +P+       +   
Sbjct: 121 NPEIYNMIGLSNGELGDLKLPKIDDNQENQFSAKDMALVSKYLIDKYPEVLNITKTKYAN 180

Query: 219 Y-----RNRIITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           +         + N   +L  M        +DG+KTG T  +G+  V +  + +  ++ VV
Sbjct: 181 FKIRQDNEMKMENIIYMLEGMGYGPKKGTMDGLKTGKTDAAGYCYVGTGTFDNRRVITVV 240

Query: 268 MGMPTS-QERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYS 323
           + +P     +  +   +I +  +K  L       K+NL     K ++  KK KR + 
Sbjct: 241 LDVPGEYSNQFIQTNNMIDTVFDKYQLVK---VDKNNLPKKYQKITITSKKQKRKFQ 294


>gi|331014403|gb|EGH94459.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 311

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 103/245 (42%), Gaps = 21/245 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++V+D+  +++      +   P AS+TK+MT  I+ +     K  ++  IPV+    +Q
Sbjct: 44  SAMVVDLQTDKVLYSSNPDVIVPIASVTKLMTAMIVLDA----KQSMDEVIPVN---ISQ 96

Query: 114 NPSKLYL----KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +    K  +       +L  +  S N  + +      G    F + M+ KAK +
Sbjct: 97  TPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 156

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI--RKFRYRNRII--- 224
           GM++T Y   + L   N ++TARD   L +  RK +P   +  +   +   +R       
Sbjct: 157 GMKHTAYVEPTSLSVYN-VSTARDLTKLVMAARK-YPLLSELSTTEQKTVTFRKPTYILG 214

Query: 225 -TNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            +N + L+ K   +I   KTG+T  +G  +V      + P+  V++           A  
Sbjct: 215 FSNTDHLVRKENWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYTHFADASR 274

Query: 283 LITSF 287
           +    
Sbjct: 275 IRKWM 279


>gi|237747720|ref|ZP_04578200.1| D-alanyl-D-alanine-endopeptidase [Oxalobacter formigenes OXCC13]
 gi|229379082|gb|EEO29173.1| D-alanyl-D-alanine-endopeptidase [Oxalobacter formigenes OXCC13]
          Length = 397

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 103/246 (41%), Gaps = 17/246 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +++++D +K ++   K        AS+TK+MT  ++ E +Q     +N  + +++     
Sbjct: 145 AALIVDESKLEILFEKNANIALPMASVTKLMTALVVVESMQD----MNEILEITQDDVDM 200

Query: 114 ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S+  LK  T  +    +   +  S N  + A G    G  K F   M+ KA+ +G
Sbjct: 201 LKHTGSR--LKVGTRMSRGNLLHLALMSSENRAAAALGRNYPGGLKGFVSAMNIKAQVLG 258

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI----ITN 226
           M ++ Y ++SGL     + +ARD A L +   + +P   KY +   +   + +      +
Sbjct: 259 MSDSNYVDSSGLS-SGNVASARDLAKLVMAASQ-YPILRKYSTDTHYSVDDGLHQLQYGS 316

Query: 227 HNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
            N L+ N    I   KTGY   +G  +V        PIV V +       R   A  +  
Sbjct: 317 TNALVHNPNWQIQLQKTGYISEAGQCLVMKAIIDGRPIVMVFLDSKGKGSRIADAQRIRN 376

Query: 286 SFLEKK 291
               ++
Sbjct: 377 WLTRQQ 382


>gi|325681262|ref|ZP_08160792.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus albus 8]
 gi|324107184|gb|EGC01470.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus albus 8]
          Length = 468

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/290 (18%), Positives = 115/290 (39%), Gaps = 40/290 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHA---KPK-------------YSSIV--IDVNKNQ 65
           ++   + +  +L    +++S A    A   KP              YS  V  I+++  +
Sbjct: 1   MKNKFRALTALLCTFAVLVSSALPAGALTFKPTVRDENGELKDLRLYSECVYMINMDTGE 60

Query: 66  -MTGFKQDEPRYPASLTKMMTLYIIFE-------YLQSKKLHLNTQIPVSKTAATQNPSK 117
            +     D+   PASLTK+MT  ++ +        L++KK+   T+            S 
Sbjct: 61  EIVDINSDKEVPPASLTKLMTAVVMLDELGGDEDALKAKKMSAGTE--AFDELYGTGAST 118

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
             ++     +    + A +  SA + S      + G+  +F  +M+ K  ++G+++T + 
Sbjct: 119 ADIQPYESVSAYDLLAANLIPSACEASNIIAVNVGGNIPRFVDMMNEKVTELGLKHTHFS 178

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI-------RKFRYRNRIITNHNKL 230
            A GL  +   ++A+D A +      N+P + +  +          F      +T+ + +
Sbjct: 179 CAHGLFTQQNFSSAKDIAKICEYALDNYPVFKELVNTTFYTMEPTDFHPEGTSLTSTDFM 238

Query: 231 LNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           +N+          GIKTG T  +G    +         + V +G P  ++
Sbjct: 239 INEYTDYYYSYCRGIKTGTTEAAGRCFASYATCDGATYLTVTLGAPMEKQ 288


>gi|15894280|ref|NP_347629.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
           [Clostridium acetobutylicum ATCC 824]
 gi|15023901|gb|AAK78969.1|AE007615_3 D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
           [Clostridium acetobutylicum ATCC 824]
 gi|325508407|gb|ADZ20043.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
           [Clostridium acetobutylicum EA 2018]
          Length = 426

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 108/262 (41%), Gaps = 33/262 (12%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
              S+I ID    ++   K  D   +PAS TK++T  I+ E  +      +  +  S++A
Sbjct: 32  AGTSAISIDAKTGEVIYAKNQDAKAFPASTTKLLTSIILNENKKP-----SDYLYYSESA 86

Query: 111 ATQNPSKL-----YLKEKTYFTTEQGILALITRSANDVSTAFGEFI--------SGSEKK 157
             Q           L       ++  + +L+  SAND++      +           +K 
Sbjct: 87  KEQPEYSFDKNIHPLNVGEKLPSDVVLKSLLMYSANDMAYVIAANLINKINSPTDEVKKD 146

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F+I+M+N+ KK+G++NT +   +GLHD +  +TA D + +      +     K  S +K 
Sbjct: 147 FSIIMNNEVKKLGLKNTHFVTPNGLHDPDHYSTAYDMSRIAKTAF-SINWILKTISTQKT 205

Query: 218 RYR-----NRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
                      + N NK+++           G KTGYT  +G  ++T     +  I+ VV
Sbjct: 206 TVTLNDGAKPELKNTNKIIDPKEPVYDKTCIGGKTGYTNEAGRCLITIFNRNNKKIIGVV 265

Query: 268 MGMPTSQER---DQKALELITS 286
           M     ++     +    LI  
Sbjct: 266 MKSQYDKDDVQVFKDMNNLINY 287


>gi|254298329|ref|ZP_04965781.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 406e]
 gi|157808378|gb|EDO85548.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           pseudomallei 406e]
          Length = 454

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 104/267 (38%), Gaps = 28/267 (10%)

Query: 40  IMISMASELHAKPKYSSI-----------VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLY 87
           ++ +   +L A+  Y++            V+D     +   +      P AS+TK+MT  
Sbjct: 190 VVAAAKPQLLARCGYTAASRHLLRSRAIYVVDERTGTVLIERNANRVMPIASVTKLMTSM 249

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVS 144
           +  +     +  ++  + VS           S+  LK  +  +    +   +  S N  +
Sbjct: 250 VALD----TRAPMSRPLRVSAQDRDYEKFTGSR--LKVGSVLSRRDMLHIALMSSENRAA 303

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A      G    F   M+ KA+ +GM+   + NA+GL     ++TARD + L     + 
Sbjct: 304 AALSRDYPGGRPAFVAAMNRKARTLGMKRMHFVNATGLS-PRNVSTARDLSRLVAAASR- 361

Query: 205 FPQYYKYFS-IRKFRYRNRII---TNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           +P+   + +   K  +  R      N + L+     +I   KTG+   +G  +V     +
Sbjct: 362 YPRIKTFSTATSKTVFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVR 421

Query: 260 DDPIVAVVMGMPTSQERDQKALELITS 286
             P+  V++G P   +    A ++   
Sbjct: 422 GRPVDIVLLGAPGPHDHVADAAKIRRW 448


>gi|149377678|ref|ZP_01895414.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Marinobacter
           algicola DG893]
 gi|149358031|gb|EDM46517.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Marinobacter
           algicola DG893]
          Length = 304

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/309 (19%), Positives = 116/309 (37%), Gaps = 24/309 (7%)

Query: 24  IQRNIQLMGKILFLSIIMISMA---SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASL 80
           I+  I L   +L    +  +MA   SEL      +++    ++  + G   D     AS+
Sbjct: 2   IRTAIVLALTVLCSLNVSRAMAIERSELQLASVNAAVAYADDEGLVYGKNADRRVPIASI 61

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQ---IPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           TK+MT  ++ E  +     L+ +   IP    A T+      ++  +       +   + 
Sbjct: 62  TKLMTALVVMESGEPLTEWLDFRERHIPAPANAYTR------IRVSSELRRSDVLRIALM 115

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S N  +        G    F   M+ KA ++GM  T + + +GL   +  +TA D   L
Sbjct: 116 SSENFAAHTLARHHPGGYDAFIEAMNAKAVELGMLKTTFVDPTGLSV-DNRSTAADLVRL 174

Query: 198 GILLRKNFPQYYKYFSIRKFR--YRNRIIT----NHNKLLNK-MHNIDGIKTGYTRNSGF 250
                + +PQ  +Y + R F   +R         N N L+++    +   KTGY   +G 
Sbjct: 175 VRAASQ-YPQIREYSTTRYFTAQFRQPRYRLAFGNTNVLVHRESWGVGISKTGYLSEAGR 233

Query: 251 NIVTSLRYKDDPIVAVV---MGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSST 307
            +V        P+V V+   +G  +      +    +T+          + + +   ++ 
Sbjct: 234 CLVMLFELDGKPLVTVLLDSLGTRSPMGDAGRIKRWLTTGAGGSVAAAARAYERKKNAAY 293

Query: 308 SLKKSLMIK 316
           +      + 
Sbjct: 294 AASDGASVS 302


>gi|160943813|ref|ZP_02091044.1| hypothetical protein FAEPRAM212_01311 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444987|gb|EDP21990.1| hypothetical protein FAEPRAM212_01311 [Faecalibacterium prausnitzii
           M21/2]
          Length = 443

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 114/294 (38%), Gaps = 31/294 (10%)

Query: 24  IQRNIQLMGKILFL---SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           +++    +  +L L    ++  + A+        +  ++D +   +   +  DE  +PAS
Sbjct: 1   MKKFTAALCTVLLLIGAVLVPGAAAAGPALANTRAYCIMDADTGLVLAQQNMDEELHPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNT-QIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILA 134
           +TK+MTL +  E     +   +  ++ V+       A  + S + L+E         + A
Sbjct: 61  ITKVMTLGLACE---KAQGDWDDVKLTVTHEDVYSLAGTDSSHIALREGEEVPLVDALYA 117

Query: 135 LITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
               SAND +    E+  G +       M+ + +++G+ +T + N  G+ D++  T+  D
Sbjct: 118 TQMASANDGANLLAEYFGGGTIADGVAAMNAQVEELGLAHTHFSNPHGISDEDHYTSCYD 177

Query: 194 QAILGILLRKNFPQYYKYFS---------------IRKFRYRNRIITNHNKLLNKMHNID 238
            A +     +  P + + F+                R F  +++I    ++    + ++ 
Sbjct: 178 MAQILRWALQQ-PGFEELFTRNEMYTMQPTNIQPVTRYFSQQDKIRIGSSR--YHIDSVL 234

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           G K GYT  + ++ V         ++   M    S ++      L+        
Sbjct: 235 GSKLGYTNTARYSYVCLAEQDGVRLICATMQSQLSTDKYNDMRTLLDYAFSTYK 288


>gi|319442898|ref|ZP_07992054.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium variabile DSM
           44702]
          Length = 425

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 101/243 (41%), Gaps = 15/243 (6%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S ++ DV+   +   K     Y PAS+ K++ + +  + L      ++ ++ V++  AT 
Sbjct: 114 SYVLYDVDSGNVLAAKDPYGLYRPASIIKILLVMVALDELD-----MDQKVKVTEEMATV 168

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           + SK+ +     +T EQ +  L+  S ND + A    + G++      M + A  +G+Q 
Sbjct: 169 DGSKVGVGPGGKYTAEQLLQGLVMNSGNDAALALAGALGGTDAT-VEKMQSLADSLGVQA 227

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN------RIITNH 227
           T     +GL      TTA D A++     +   +        +  +          I++ 
Sbjct: 228 TKVTTVNGLDTPEVQTTAYDLALVYRAAFQR-QELRDLLGTEQATFPGYRDNPEFQISSD 286

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-DQKALELITS 286
           N LL       G KTG+T N+      ++  K   +  V++    +  R  Q+A  +  +
Sbjct: 287 NGLLYDYPGTIGGKTGFTDNARHTYAAAVSRKGRTLGVVMLNSTVAAGRPWQQAETVFDA 346

Query: 287 FLE 289
             +
Sbjct: 347 AFD 349


>gi|229816443|ref|ZP_04446744.1| hypothetical protein COLINT_03496 [Collinsella intestinalis DSM
           13280]
 gi|229807985|gb|EEP43786.1| hypothetical protein COLINT_03496 [Collinsella intestinalis DSM
           13280]
          Length = 449

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 102/257 (39%), Gaps = 33/257 (12%)

Query: 56  SIVI--DVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +I++  D     +   ++ D P   AS TK+MT  +  ++        +  + V   AAT
Sbjct: 60  AIIMRPD---GSVYYEREADSPIKIASTTKVMTALVALDHCDP-----SETLTVDHAAAT 111

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--------KFAILMSN 164
              S + LKE    T EQ +  L+  S NDV+TA    + G            F   M++
Sbjct: 112 VGESCVGLKEGDTLTLEQALTGLMVMSGNDVATAIATHVGGKIDPASADPYGTFIKAMND 171

Query: 165 KAKKIGMQNTIYKNASGLH----DKNQITTARDQAILGILLRKN--FPQY------YKYF 212
           +A ++G  +T+++N  GL       N  +TA D   +      N  F  +        + 
Sbjct: 172 RAAQLGCTDTLFENPHGLDFGAWVGNLHSTAHDVTRIWAEAWHNEAFRSFACSDATEMHV 231

Query: 213 SIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK-DDPIVAVVMGMP 271
           +      R+  +T  NK+L +     G KTG T  +G   V +   + +  +   + G  
Sbjct: 232 TSADGSARSLPLTVRNKILGR-DGNLGGKTGSTYEAGECFVCTFSREPEGEVYIALFGSK 290

Query: 272 TSQERDQKALELITSFL 288
             + R    L L   + 
Sbjct: 291 GDEGRFNDTLTLANWYY 307


>gi|89893842|ref|YP_517329.1| hypothetical protein DSY1096 [Desulfitobacterium hafniense Y51]
 gi|219668209|ref|YP_002458644.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
           hafniense DCB-2]
 gi|89333290|dbj|BAE82885.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538469|gb|ACL20208.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
           hafniense DCB-2]
          Length = 324

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 111/239 (46%), Gaps = 20/239 (8%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---- 110
           +I++ +   ++   K  +E  YPASLTK+MT  +  E L +    L  +I +S+      
Sbjct: 74  AILVRLKDQKILMGKGSEEKIYPASLTKIMTAILAIENLPN----LQEKIRLSQATFQGL 129

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
              N S    + +   +    +  ++  S  +      E I+GSE+KFA+LM+ KA ++G
Sbjct: 130 YQANASMTGFQPEEQVSVMDLLYGVMLPSGAESCVGLAERIAGSERKFALLMNQKAAELG 189

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYK--YFSIRKFRYRNRIITN 226
           M +T ++NA+GLH +N  TT +D A+L     +N  F + +     S          IT 
Sbjct: 190 MNHTHFENATGLHAENHYTTVKDLAVLLSYALQNDLFREVFTASRHSTPPTNKHPGGITF 249

Query: 227 HNKL---LNKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           ++ +   L         I G KTGYT  +G  + +  +   +  + +  G   + + +Q
Sbjct: 250 YSTMFSVLGSSKIAGGEILGGKTGYTDEAGLCLASLAQVGKEQYILITAGAKGNHDSEQ 308


>gi|227524141|ref|ZP_03954190.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus hilgardii ATCC
           8290]
 gi|227088698|gb|EEI24010.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus hilgardii ATCC
           8290]
          Length = 393

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 118/274 (43%), Gaps = 33/274 (12%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +    K   ++I ++    ++   K    PR  AS++K+MTLY++ + + +     N+++
Sbjct: 119 APFDLKYAKAAIAMNEKTGKILWSKNSNMPRAIASVSKLMTLYLVDKKVATAAYSWNSKV 178

Query: 105 PVS-KTAATQNPSKLYLK---EKTYFTTEQGILALITRSANDVSTAFGEFISGS-----E 155
             S     +   S +Y      K  +T ++   A +  S+N+ + A G++++G       
Sbjct: 179 NTSYSGLKSLGQSLVYGGFKFTKNSYTVKELYEAALIDSSNNAAIALGQWVAGGGTPSYN 238

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKN-------------QITTARDQAILGILLR 202
           K F  LM+ +AK   +    +  A+G+                  + +A+D A++   L 
Sbjct: 239 KSFVKLMNRQAKSWNLGKATFVTANGMEQNALKGYGYSTSGGNANLVSAKDVALIARHLI 298

Query: 203 KNFPQYYKYFSIRKFRYRNRIITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSL 256
            ++P    Y  I+  +   ++  N+N LL       K  ++DG+KTG+T  +G+  V + 
Sbjct: 299 TDYPSTLTYSKIKSMKVSGQLCYNYNNLLSGRAFYQKSLDVDGLKTGFTDLAGYCFVGTG 358

Query: 257 RYKDD-PIVAVVMGMPTSQERDQKALELITSFLE 289
           +      ++ VV+     Q    +   L+     
Sbjct: 359 KKTGHDRLITVVL---HDQNEFTETRSLMNYVYN 389


>gi|89074889|ref|ZP_01161339.1| Hypothetical D-alanyl-D-alanine endopeptidase [Photobacterium sp.
           SKA34]
 gi|89049286|gb|EAR54849.1| Hypothetical D-alanyl-D-alanine endopeptidase [Photobacterium sp.
           SKA34]
          Length = 298

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 102/262 (38%), Gaps = 26/262 (9%)

Query: 32  GKILFLSIIMISMASELH-----------AKPKYSSIVIDVNKNQMTGFKQDE-PRYPAS 79
             ILF ++  IS +S                   S+ VID++  +    K        AS
Sbjct: 4   AFILFFTLASISFSSMASINTSKLDPNKLQTASVSNYVIDLSTGKTLYRKNSNVKMPIAS 63

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITR 138
           LTK+MT  +  +     KL L+ ++  + T       +   ++  +  +  + I   +  
Sbjct: 64  LTKLMTAMVTLDA----KLPLDEKLTFTPTDKKHMYNTYTRIRMDSTLSRGETIHIALMS 119

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S N  +        G  K F   M+ KAK +GM NT + ++SGL   N  +TA D A + 
Sbjct: 120 SENLAAATLAGNYPGGYKAFIKAMNRKAKSLGMTNTHFVDSSGLDPHNH-STASDVAKMV 178

Query: 199 ILLRKNFPQYYKYFS----IRKFRYRNRII--TNHNKL-LNKMHNIDGIKTGYTRNSGFN 251
               K +P+  KY +       F   N  +  TN N L   K   ++  KTGY   +G  
Sbjct: 179 RAAYK-YPEIRKYSTSPVHTAYFGKPNYKLGYTNTNALARGKKWTVNLTKTGYLDEAGRC 237

Query: 252 IVTSLRYKDDPIVAVVMGMPTS 273
           +          I+ V++     
Sbjct: 238 LGMVTTIDGKRILMVMLDSQGK 259


>gi|184154585|ref|YP_001842925.1| D-alanyl-D-alanine [Lactobacillus fermentum IFO 3956]
 gi|183225929|dbj|BAG26445.1| D-alanyl-D-alanine [Lactobacillus fermentum IFO 3956]
          Length = 411

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 113/298 (37%), Gaps = 26/298 (8%)

Query: 53  KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++I ID    Q+   K        AS++K++T+ +I + +++ KL  NT++ V+K  A
Sbjct: 38  AKAAIAIDATTGQILYAKNANTKLAIASISKIITVGVIEQEIKAGKLSWNTKVKVTKEEA 97

Query: 112 T----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                   S + L     +T ++   A + +SA+  +         S   F   M    K
Sbjct: 98  KLSENTEYSNITLTAGKSYTVKELTEAAMIKSADAAAITLSRATGDSTASFVKKMQAFVK 157

Query: 168 KIGMQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFS 213
           K G+ +    N  GL               +     TA D A +   L KN+P       
Sbjct: 158 KAGVTDAKLYNQVGLTNSQMGSYGLKGVAKNAENEMTATDVAKIAQYLIKNYPSLLNITK 217

Query: 214 IRKFRYRNRIITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           +         +T  NK+L    +      IDG+KTG +  +G   V++  Y+   I+ VV
Sbjct: 218 LTSTTIDGTTVTTINKMLAGQSDAPTQVKIDGLKTGTSDKAGACFVSTGTYQGHRIITVV 277

Query: 268 MGMP-TSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
           +       ER  +   L      + T    Q      + +  +  + +  + K T  +
Sbjct: 278 LHATGGGDERFTQTANLYHLIANEYTAYTVQPSVAVTVPNGKVTTTTLTTQGKITLWK 335


>gi|187735971|ref|YP_001878083.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187426023|gb|ACD05302.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 323

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 61/292 (20%), Positives = 114/292 (39%), Gaps = 43/292 (14%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYL 93
           LFL  +         A+ + S I I+ N  ++      E  R  ASL+++ T  +  +++
Sbjct: 6   LFLLTLACVFQFSAQAQQRPSYIAIEANSGKLLFSSNAEEKRPVASLSQVATAMVALDWV 65

Query: 94  QSKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
              +L L+T I V + A   +  + + L+     T    + + +  S N  +     F+ 
Sbjct: 66  ARTRLPLDTFIAVPQEAFGLRAGNPMDLQPGDRLTLRDALYSTLLGSDNVSALTVASFVG 125

Query: 153 GS----------EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT--ARDQAILGIL 200
                          F   M+N A+ + M  T +    GL   N ++T  A D A+LG+ 
Sbjct: 126 RDLVSRRGGGAPIAAFVAEMNNLARSLRMAKTRFTAPHGLDAGNSVSTSCALDMALLGVY 185

Query: 201 LRKNFPQYYKYFSIRKFRY------RNRIIT---NHNKLLNKMHNIDGIKTGYTRNSGFN 251
             +N P +    S    R       + R +    N+N+L+     +DGIK G +R +G  
Sbjct: 186 SMQN-PAFCYIVSQASRRIEVQSQTKGRTMYDISNNNRLM-SASGVDGIKAGTSRAAGPC 243

Query: 252 IVTSLRYK---------------DDPIVAVVMGMPTSQERDQKALELITSFL 288
           ++ S+                     ++  V+G  +   R   A E++ +  
Sbjct: 244 LLLSVTRNAISRRSPQTGTEVIYPQRMIIAVLGSAS---RYSLAREMMNTGW 292


>gi|225567960|ref|ZP_03776985.1| hypothetical protein CLOHYLEM_04033 [Clostridium hylemonae DSM
           15053]
 gi|225163248|gb|EEG75867.1| hypothetical protein CLOHYLEM_04033 [Clostridium hylemonae DSM
           15053]
          Length = 311

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 112/278 (40%), Gaps = 27/278 (9%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQM-TGFKQDEPRYPASLTKMMTLYI 88
           L  + L ++   + +A         ++ + DV+K+ +   +   E  YPAS TK+MT  +
Sbjct: 35  LFAEDLCVTAKDVPLADAPDTGSLSAAALFDVDKSDVDFAYNVHERLYPASTTKIMTALV 94

Query: 89  IFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
             +        L+  + V   A       +     LK     T E  +  L+  S ND +
Sbjct: 95  AIKNAD-----LSDVVTVGADADESSFAADEQTCGLKAGDRLTLEALLNGLLLYSGNDNA 149

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A  +++ GS + FA +M+ +A ++    + + N++GLH+++  TTA D  ++     K 
Sbjct: 150 VAIADYVGGSMEGFAEMMNEEAARLMATESHFLNSNGLHNEDHYTTAYDLYLIFNECIK- 208

Query: 205 FPQYYKYFSIRKFRY---------RNRIITNHN------KLLNKMHNIDGIKTGYTRNSG 249
             ++      + +           R       +        L +   I G KTG T+ +G
Sbjct: 209 HEEFLDIIRAKSYTADITGADGNKRQITWEPTSFYALGEAALPQNATIIGGKTGTTKEAG 268

Query: 250 FNIVTSLRYKD-DPIVAVVMGMPTSQERDQKALELITS 286
             ++         P +++VMG  T     +    LI +
Sbjct: 269 NCLILLSEDGQSRPFISIVMGADTKAILYEDMTGLIEA 306


>gi|296877208|ref|ZP_06901248.1| DD-carboxypeptidase [Streptococcus parasanguinis ATCC 15912]
 gi|296431728|gb|EFH17535.1| DD-carboxypeptidase [Streptococcus parasanguinis ATCC 15912]
          Length = 440

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/321 (20%), Positives = 128/321 (39%), Gaps = 43/321 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           KPK + IVID N   +      D  R   S+ K+M+ Y++F  L+  K+  +T +  ++ 
Sbjct: 61  KPK-ADIVIDANTGAILYGDNIDTVRDSGSMAKLMSAYVVFRALKEGKIKYDTVVTATEA 119

Query: 110 --AATQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSN 164
             A ++N   S   +     +   + I  L   S++         ++ ++  KF  LM+ 
Sbjct: 120 DQAISENNLLSNSPIVAGVDYKVSELIKMLFVPSSSAAVIMLANAVTDNDPDKFLDLMNQ 179

Query: 165 KAKKIGMQNTIYKNASGLH---------------DKNQITTARDQAILGILLRKNFPQYY 209
            ++++GM +T + N +G                 + N   TARD +IL   +  + P+  
Sbjct: 180 YSQEMGMSHTKWHNPNGAMISVLQGYYNPQRYDVNANNEITARDMSILAYHIVNDLPEML 239

Query: 210 KY-----FSIRKFRYRNRIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           +Y      +I +     +   N+N  L      +   DG+KTG +  + +N   + +   
Sbjct: 240 EYTKQAHTTIMEGTPYEQSYDNYNTSLEGGKFALKGTDGLKTGSSPTADYNYTATTKRGK 299

Query: 261 DPIVAVVMGMPTSQERDQK----------ALELITSFLEKKTLKHQQTHRKDNLSSTSLK 310
             I+ V++G+        +          A ++   +  KK L   +   K +  +  LK
Sbjct: 300 QRIIEVILGVGNYDVEIAESYRNQIGNTLAEKMFADYQYKKVLSAGE--HKIDGKTIQLK 357

Query: 311 KSLMIKKLKRTYSQFKKIDAK 331
           +       K T    K  D +
Sbjct: 358 QDFYATVKKGTKPALKLEDNR 378


>gi|118594052|ref|ZP_01551399.1| probable D-alanyl-D-alanine carboxypeptidase [Methylophilales
           bacterium HTCC2181]
 gi|118439830|gb|EAV46457.1| probable D-alanyl-D-alanine carboxypeptidase [Methylophilales
           bacterium HTCC2181]
          Length = 256

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/251 (22%), Positives = 109/251 (43%), Gaps = 19/251 (7%)

Query: 56  SIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ- 113
           ++V+  + +++   K+       ASLTK+MT  +I +      L L  ++ +SK    + 
Sbjct: 2   AMVVSQHTDEVIYQKKAYTKTSIASLTKLMTAMVIIDSG----LDLKEKVVISKEDIDRL 57

Query: 114 --NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S+  L   T  T  + +   +  S N  ++A        +K F   M+ KA ++GM
Sbjct: 58  KWTGSR--LTFGTKLTRLELLSVALMASDNRAASALSRSYPAGKKAFVRAMNIKALQLGM 115

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF------RYRNRIIT 225
            N+ + + +GL DK  I+TARD   +     + +P      +          R ++   +
Sbjct: 116 HNSFFADPTGL-DKRNISTARDLVRMTKAAYQ-YPLIRDLSTNPNGNVKVGKRKKSIGFS 173

Query: 226 NHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N L+ K     G+ KTG+ R +G  +V      ++P++ V++       R   A  + 
Sbjct: 174 NTNSLVRKGQWDIGLSKTGFIREAGRCLVMQTVINNEPVIIVLLDSFGKYTRVADAKRIK 233

Query: 285 TSFLEKKTLKH 295
           T   ++K +  
Sbjct: 234 TWMEKEKKINK 244


>gi|229032648|ref|ZP_04188611.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
 gi|228728647|gb|EEL79660.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
          Length = 301

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 62/284 (21%), Positives = 128/284 (45%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYS---SIVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A    A    +P  +   +I ID +  ++   K +DE
Sbjct: 23  MKRTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPSITGQYAITIDADTGEILYGKREDE 82

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      + +I +++ A        K+ L+       ++ 
Sbjct: 83  RSYPASIAKMMTTLLLLENVKE-----DEEITITENAIKTESQSKKIKLRAGEKLKRDEA 137

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 138 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSP 197

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D A++     K +P   +Y +  +       R+  I N+ +  L       G K+G + 
Sbjct: 198 YDIAMITKEALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSA 256

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T  +      ++     ++
Sbjct: 257 LGKYTVVTVDEKDGKRVINVVL-SSTRTQLYPDTKKMAHYAFQQ 299


>gi|320009813|gb|ADW04663.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           flavogriseus ATCC 33331]
          Length = 299

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 56/282 (19%), Positives = 102/282 (36%), Gaps = 25/282 (8%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLTKMMTL 86
            G +L       +  +     P  ++    V++    +    K  D  R   S TK+MT 
Sbjct: 21  AGAVLATGAFASTAQAAAPPTPTITAKGGFVMNNGTAKTLYGKSADTRRSTGSTTKIMTA 80

Query: 87  YIIFEYLQSKKLHLNTQIPV----SKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
            ++      K L+L+ ++ V    S        S   L      T  Q +  L+  S  D
Sbjct: 81  KVVL---AQKNLNLDAKVTVQKAYSDYIVKNTASSARLIVGDKVTVRQLLYGLMLPSGCD 137

Query: 143 VSTAFGEFISGS------EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            + A  +            K F   M+  AK +G++NT + +  G+   +  +T RD   
Sbjct: 138 AAYALADKFGTGSTRAARVKSFIGKMNASAKSLGLKNTHFDSFDGIGGGSNYSTPRDLTK 197

Query: 197 LGILLRKN--FPQYYKY------FSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
           +     KN  F    K        + +   YR     N N +L     + G+KTG    +
Sbjct: 198 IASSAMKNSTFRAIVKTKSTKQKVTTKTGGYRYMSWANTNAMLGSYSGMIGVKTGSGPTA 257

Query: 249 GFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
            + +V +       ++  V+   ++  R   A +L+    +K
Sbjct: 258 KYCLVFAATRNGKTVIGTVLTSTSATTRTADAKKLLDYGFKK 299


>gi|47570691|ref|ZP_00241288.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
 gi|47552642|gb|EAL11096.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
          Length = 259

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 97/216 (44%), Gaps = 28/216 (12%)

Query: 63  KNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSK 117
             ++   +  DE    AS++K++ +Y + E ++  K+  +T++ +S  A         S 
Sbjct: 43  TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           +  ++   +T  +   +++  SAN  S A  E ++GSEK F  L +  AKK+G++   + 
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162

Query: 178 NASGLHDKN--------------QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-- 221
           NA+GL++ +                 +ARD  IL   +   +P+  +    R   + +  
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222

Query: 222 ---RIITNHNKLLNK----MHNIDGIKTGYTRNSGF 250
                + N N +L          +G+KTG +  +G+
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTNGLKTGSSDTAGY 258


>gi|297201894|ref|ZP_06919291.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sviceus ATCC
           29083]
 gi|297147997|gb|EDY56767.2| D-alanyl-D-alanine carboxypeptidase [Streptomyces sviceus ATCC
           29083]
          Length = 463

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 60/292 (20%), Positives = 106/292 (36%), Gaps = 33/292 (11%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPK----YSSIVIDVNKNQMTGFKQDEPR-YPASL 80
           R   + G  L  +   +++AS +   PK     S IV D     +        R  PAS 
Sbjct: 81  RMSTVGGSRLGRAGTQVNLASGVPVLPKDITARSWIVTDAESGDVLAAHNAHWRLPPAST 140

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-LYLKEKTYFTTEQGILALITRS 139
            KM+    +       + H   ++  S  A     S  + +KE   +T     L +  RS
Sbjct: 141 MKMLFADTLLPKFAKAETH---KVVPSDLAGMGAGSSLVGIKEGETYTVHDLWLGVFLRS 197

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            ND          G   K    M+  A+++   +T   +  G     Q+++A D  +   
Sbjct: 198 GNDAVHVLSAMNKG-VAKTVTEMNEHAEELQALDTHVVSPDGYDAPGQVSSAYDLTLFAR 256

Query: 200 --LLRKNFPQYYKYFSIR-----------KFRYRNRIITNHNKLL------NKMHNIDGI 240
             L +K+F +Y    + +           K   +   I N N+LL      ++   I G+
Sbjct: 257 SGLQKKDFREYCSTVTAKFPGETEKDKKGKAVRKPFEIQNTNRLLSGDYDISQYQGIAGV 316

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ---KALELITSFLE 289
           K G T N+G             ++  VM  P+ +E ++   +  +L     +
Sbjct: 317 KNGNTTNAGATFTGVAERNGRVLLVTVMN-PSKEEHNEVYKETAKLFDWGFK 367


>gi|302879653|ref|YP_003848217.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Gallionella
           capsiferriformans ES-2]
 gi|302582442|gb|ADL56453.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Gallionella
           capsiferriformans ES-2]
          Length = 347

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 55/253 (21%), Positives = 104/253 (41%), Gaps = 17/253 (6%)

Query: 41  MISMASELHAKPKYS---SIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSK 96
           + S A +  + PK +   +++ D    +    K  +   P AS+TK+MT  ++ +     
Sbjct: 83  LSSAAFQPVSSPKLASSIALIYDEQTQRPLYTKNPDAVAPIASITKLMTAMVVLDAEPD- 141

Query: 97  KLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
              LN  + V +        +   L   T F   + +   +  S N  ++       G  
Sbjct: 142 ---LNEALSVGEADFDILKGTHSRLGVGTTFIRSEMLKLALMSSENRAASVLARNYPGGM 198

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
                 M+ KA+K+GM +T +++ +GL+ +N ++TARD   +    R N+   ++Y +  
Sbjct: 199 AAAVAAMNAKARKLGMTHTTFRDPTGLNSEN-VSTARDLVKMVAAAR-NYKLIHQYTTTA 256

Query: 216 KF-----RYRNRIITNHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
                  R R     N N L+       G+ KTGY   +G  +V   + +  P++ V++ 
Sbjct: 257 THSVEGARGRELTFNNTNPLVKNASWEIGVSKTGYINEAGRCLVMQAQIRQRPVIIVLLD 316

Query: 270 MPTSQERDQKALE 282
                 R   A  
Sbjct: 317 SVGKTTRIGDANR 329


>gi|167618346|ref|ZP_02386977.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis Bt4]
          Length = 355

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 103/265 (38%), Gaps = 28/265 (10%)

Query: 39  IIMISMASELHAKPKYSSI-----------VIDVNKNQMTGFKQDE-PRYPASLTKMMTL 86
            ++ +   +L A+  Y++            V+D     +   +        AS+TK+MT 
Sbjct: 90  AVVAAAKPQLLARCGYTAASRHLLRSRAIYVVDERTGTVLIERNANCVVPIASVTKLMTS 149

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDV 143
            +  +     +  ++  + VS           S+  LK  +       +   +  S N  
Sbjct: 150 MVALD----TRAPMSRPLRVSAQDRDYEKFTGSR--LKVGSVLPRRDMLHIALMSSENRA 203

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           + A      G    F   M+ KA+ +GM++T + NA+GL     ++TARD + L     +
Sbjct: 204 AAALSRDYPGGRPAFVAAMNRKARTLGMKHTHFVNATGLS-PRNVSTARDLSRLVAAASR 262

Query: 204 NFPQYYKYFS-IRKFRYRNRII---TNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY 258
            +P    + +   K  +  R      N + L+     +I   KTG+   +G  +V     
Sbjct: 263 -YPHIKSFSTDTSKTVFPGRGQLHYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAV 321

Query: 259 KDDPIVAVVMGMPTSQERDQKALEL 283
           +  P+  V++G P   +    A ++
Sbjct: 322 RGRPVDIVLLGAPGPHDHVADAAKI 346


>gi|302558857|ref|ZP_07311199.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus
           Tu4000]
 gi|302476475|gb|EFL39568.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus
           Tu4000]
          Length = 458

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 59/285 (20%), Positives = 100/285 (35%), Gaps = 31/285 (10%)

Query: 32  GKILFLSIIMISMASELHAKPK----YSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTL 86
           G  L L    +++A  +   PK     S IV D     +        R  PAS  KM+  
Sbjct: 83  GARLGLPGTQVNLAGGVPVLPKGLSGRSWIVADAESGDVLAAHNAHWRLAPASTLKMLFA 142

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-YLKEKTYFTTEQGILALITRSANDVST 145
             +             ++  S  A   + S +  +KE   ++     L +  RS ND   
Sbjct: 143 DTLLPKWPK---TTEHKVEPSDMAGIGSGSSMVGIKEDETYSVHDLWLGVFLRSGNDAVH 199

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI--LLRK 203
                ++G  K     M+  A+++   +T   +  G     Q+++A D  +     + +K
Sbjct: 200 VL-SAMNGGVKNTVDEMNAHAEELQALDTHVVSPDGYDAPEQVSSAYDLTLFARSGMQKK 258

Query: 204 NFPQYYKYFSIR-----------KFRYRNRIITNHNKLLNK------MHNIDGIKTGYTR 246
           +F +Y    S +           K    +  I N N+LL           I G+K G T 
Sbjct: 259 DFREYCSTVSAKFPGETKKNKKGKKVRGSFEIQNTNRLLAGDYDVPVYQGIAGVKNGNTT 318

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPT--SQERDQKALELITSFLE 289
           N+G             ++  VM   T  S E  ++  +L     E
Sbjct: 319 NAGATFTGVAERDGKVLLVTVMNPRTNESNEVYKETAKLFDWGFE 363


>gi|295104040|emb|CBL01584.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 443

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 112/294 (38%), Gaps = 31/294 (10%)

Query: 24  IQRNIQLMGKILFL---SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPAS 79
           +++    +  +L L    ++  + A+        +  ++D +   +   +  DE  +PAS
Sbjct: 1   MKKFTAALCTVLLLIGAVLVPGAAAAGPALANTRAYCIMDADTGLVLAQQNMDEELHPAS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNT-QIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILA 134
           +TK+MTL +  E     +   +  ++ V+       A  + S + L+E         + A
Sbjct: 61  ITKVMTLGLACE---KAQGDWDDVKLTVTHEDVYSLAGTDSSHIALREGEEVPLVDALYA 117

Query: 135 LITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
               SAND +    E+  G +       M+ + +++G+ +T + N  G+ D +  T+  D
Sbjct: 118 TQMASANDGANLLAEYFGGGTIADGVAAMNAQVEELGLAHTHFSNPHGISDDDHYTSCYD 177

Query: 194 QAILGILLRKNFPQYYKYFS---------------IRKFRYRNRIITNHNKLLNKMHNID 238
            A +     +  P +   F+                R F  +++I    ++    + ++ 
Sbjct: 178 MAQILRWALQQ-PGFEDLFTRNEMYTMQPTNIQPVTRYFSQQDKIRIGSSR--YHIDSVL 234

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           G K GYT  + ++ V         ++   M    S ++      L+        
Sbjct: 235 GSKLGYTNTARYSYVCLAEQDGVRLICATMQSQLSTDKYNDMRTLLDYAFSTYK 288


>gi|197301728|ref|ZP_03166798.1| hypothetical protein RUMLAC_00454 [Ruminococcus lactaris ATCC
           29176]
 gi|197299168|gb|EDY33698.1| hypothetical protein RUMLAC_00454 [Ruminococcus lactaris ATCC
           29176]
          Length = 339

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 57/232 (24%), Positives = 97/232 (41%), Gaps = 24/232 (10%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA--TQNPSKLYLKEKTYFTTEQ 130
           +  YPAS TK+MT Y+  +Y +     L   + V+ +      +     L          
Sbjct: 108 DKLYPASTTKLMTAYLALKYGK-----LEDMVTVTDSVTGFAIDEVVCGLYPGGQVKLYD 162

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  L+ +S ND   A  E+ISGS + FA LM+ +AK++G   T + N  GLH+ +  TT
Sbjct: 163 LLCGLLLKSGNDCGVAIAEYISGSVEAFAELMNEEAKELGATGTHFVNPHGLHEDDHYTT 222

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYR-NRIITNHNKL---------LNKMHN---- 236
           A D  ++     +N   + +  S+  +         N + L         L K       
Sbjct: 223 AYDLYLIFNACIQN-DTFKEIISMSSYTMSIGDAAGNTHSLEVLPTNYYSLGKTEAPEGI 281

Query: 237 -IDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVMGMPTSQERDQKALELITS 286
            + G KTG T  +G  ++      +  P ++V+MG        Q+   L+ +
Sbjct: 282 KVFGGKTGTTDQAGCCVILYSEDMEAHPYISVIMGAEDKAFLYQEMNRLLEA 333


>gi|315445089|ref|YP_004077968.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1]
 gi|315263392|gb|ADU00134.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1]
          Length = 277

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 54/274 (19%), Positives = 112/274 (40%), Gaps = 23/274 (8%)

Query: 31  MGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PA 78
           +G +L  S+ + +               +   P  + +V D++  ++   K     Y PA
Sbjct: 12  LGALLTASVSVAAPGVAQPAAQPAAAQPIPDGPAKAWLVADLDTGRVLASKDPYGTYAPA 71

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           S  K++    + ++L+      ++    +++      S   L     +TT Q + A++  
Sbjct: 72  STIKVLLAMTVLDHLRP-----DSFARANESHTKIECSCAGLTPGQAYTTAQLVSAILMV 126

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--QITTARDQAI 196
           S ND +T  G+ + G        M+ KA  +G ++T   + SGL       +TT  D A+
Sbjct: 127 SGNDAATMLGDMLGGQRVA-VAAMNRKAALVGARSTKASSTSGLDGPGWESVTTPHDLAV 185

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           +     K +P   +        +  + + N N+LL++     G KTG+T  +    V + 
Sbjct: 186 IMRAALK-YPLIAQIMRSPTAPFPGKTLHNQNELLSRYPGDLGGKTGFTNLARKTYVGAA 244

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +  +  +V V M      +   +A++L+     +
Sbjct: 245 QRGNRRLVVVQMYGTG--DLYGQAMQLLDYGFSQ 276


>gi|206976429|ref|ZP_03237336.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           H3081.97]
 gi|217962480|ref|YP_002341052.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH187]
 gi|229141730|ref|ZP_04270260.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
 gi|206745353|gb|EDZ56753.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           H3081.97]
 gi|217066911|gb|ACJ81161.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH187]
 gi|228641798|gb|EEK98099.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
          Length = 279

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 128/284 (45%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A    A    +P  +    I ID +  ++   K +DE
Sbjct: 1   MKRTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPSITGRYGITIDADTGEILYGKREDE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      + +I V++ A        K+ L+       ++ 
Sbjct: 61  RSYPASIAKMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 116 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D AI+     K +P   +Y +  +       R+  I N+ +  L       G K+G + 
Sbjct: 176 YDIAIITKEALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSA 234

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T ++      ++     ++
Sbjct: 235 LGKYTVVTVDEKDGKRVITVVL-SSTRKQLYPDTKKMAHYAFQQ 277


>gi|49481069|ref|YP_039030.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
           carboxypeptidase) [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49332625|gb|AAT63271.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
           carboxypeptidase) [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 279

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 129/284 (45%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYS---SIVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A    A    +P  +   +I ID +  ++   K +DE
Sbjct: 1   MKRTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPSITGQYAITIDADTGEILYGKREDE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      + +I V++ A        K+ L+       ++ 
Sbjct: 61  RSYPASIAKMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 116 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D A++     K +P   +Y +  +       R+  I N+ +  L       G K+G + 
Sbjct: 176 YDIAMITKEALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSA 234

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T ++      ++     ++
Sbjct: 235 LGKYTVVTVDEKDGKRVINVVL-SSTRKQLYPDTKKMAHYAFQQ 277


>gi|14719796|pdb|1J9M|A Chain A, K38h Mutant Of Streptomyces K15 Dd-Transpeptidase
          Length = 262

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 92/262 (35%), Gaps = 28/262 (10%)

Query: 51  KPKYSSI---VIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
           KP  +++    ++         K  D  R   S T +MT  ++        L+L+ ++ +
Sbjct: 3   KPTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTHIMTAKVVL---AQSNLNLDAKVTI 59

Query: 107 ----SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS------EK 156
               S      N S+ +L      T  Q +  L+  S  D + A  +            K
Sbjct: 60  QKAYSDYVVANNASQAHLIVGDKVTVRQLLYGLMLPSGCDAAYALADKYGSGSTRAARVK 119

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F   M+  A  +G+ NT + +  G+ +    +T RD   +     KN   +      + 
Sbjct: 120 SFIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLTKIASSAMKNS-TFRTVVKTKA 178

Query: 217 FRYRNRI----------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           +  +               N N LL+      G+KTG    + + +V +       ++  
Sbjct: 179 YTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGT 238

Query: 267 VMGMPTSQERDQKALELITSFL 288
           V+   +   R+  A +++    
Sbjct: 239 VLASTSIPARESDATKIMNYGF 260


>gi|145224759|ref|YP_001135437.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
           gilvum PYR-GCK]
 gi|145217245|gb|ABP46649.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
           gilvum PYR-GCK]
          Length = 277

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 54/274 (19%), Positives = 112/274 (40%), Gaps = 23/274 (8%)

Query: 31  MGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PA 78
           +G +L  S+ + +               +   P  + +V D++  ++   K     Y PA
Sbjct: 12  LGALLTASVSVAAPGIAQPAAQPAAAQPIPDGPAKAWLVADLDTGRVLASKDPYGTYAPA 71

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           S  K++    + ++L+      ++    +++      S   L     +TT Q + A++  
Sbjct: 72  STIKVLLAMTVLDHLRP-----DSFARANESHTKIECSCAGLTPGQAYTTAQLVSAILMV 126

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN--QITTARDQAI 196
           S ND +T  G+ + G        M+ KA  +G ++T   + SGL       +TT  D A+
Sbjct: 127 SGNDAATMLGDMLGGQRVA-VAAMNRKAALVGARSTKASSTSGLDGPGWESVTTPHDLAV 185

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
           +     K +P   +        +  + + N N+LL++     G KTG+T  +    V + 
Sbjct: 186 IMRAALK-YPLIAQIMRSPTAPFPGKTLHNQNELLSRYPGDLGGKTGFTNLARKTYVGAA 244

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +  +  +V V M      +   +A++L+     +
Sbjct: 245 QRGNRRLVVVQMYGTG--DLYGQAMQLLDYGFSQ 276


>gi|7766855|pdb|1ESI|A Chain A, R248l Mutant Of Streptomyces K15 Dd-Transpeptidase
          Length = 262

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 92/262 (35%), Gaps = 28/262 (10%)

Query: 51  KPKYSSI---VIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
           KP  +++    ++         K  D  R   S TK+MT  ++        L+L+ ++ +
Sbjct: 3   KPTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVL---AQSNLNLDAKVTI 59

Query: 107 ----SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS------EK 156
               S      N S+ +L      T  Q +  L+  S  D + A  +            K
Sbjct: 60  QKAYSDYVVANNASQAHLIVGDKVTVRQLLYGLMLPSGCDAAYALADKYGSGSTRAARVK 119

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F   M+  A  +G+ NT + +  G+ +    +T RD   +     KN   +      + 
Sbjct: 120 SFIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLTKIASSAMKNS-TFRTVVKTKA 178

Query: 217 FRYRNRI----------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           +  +               N N LL+      G+KTG    + + +V +       ++  
Sbjct: 179 YTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGT 238

Query: 267 VMGMPTSQERDQKALELITSFL 288
           V+   +    +  A +++    
Sbjct: 239 VLASTSIPALESDATKIMNYGF 260


>gi|293367840|ref|ZP_06614486.1| penicillin-binding protein 4 [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291318031|gb|EFE58431.1| penicillin-binding protein 4 [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 422

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 76/305 (24%), Positives = 130/305 (42%), Gaps = 36/305 (11%)

Query: 56  SIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTA 110
           ++ I     Q+   +  +    PAS+TK+MTLY+ F+ L + K+  + +I ++    K +
Sbjct: 53  AMTITDENGQVLYDYHGETSSDPASITKLMTLYLTFDALNNGKISKDQKIKITSDYEKMS 112

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           A  N S + LK+   +T ++ +  +   S+N  +   GE I GS  KF   M+ KAK++G
Sbjct: 113 ALPNLSTVKLKKGQTYTIDEIMKQVSLASSNPATLILGEKIDGSTSKFTDRMNEKAKELG 172

Query: 171 MQNTIYKNASGLHDK--------------NQITTARDQAILGILLRKNFPQYYKYFSIRK 216
           M +T + N SG  +                  TT++D ++L   L K  P+   Y  +  
Sbjct: 173 MNHTHFTNPSGASNDLLKPYEPKKYKDEAKTKTTSQDISLLIHSLLKKHPEVINYTKLTH 232

Query: 217 FRYRNRIITNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM-- 270
            +  N+     N  L          DG+KTG T + G++I  +       + A ++ +  
Sbjct: 233 GKQYNQDFETTNLSLKGEPEEYLGTDGLKTG-TSDEGYSIALTNNQDHLRLNATILDVKP 291

Query: 271 -PTSQE---RDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFK 326
            P+ Q    R+Q A  +I        L+ + T+ K     T       I   K  Y    
Sbjct: 292 YPSEQAKHVRNQIANHMIED------LRKEYTYTKVMSKGTHKIDGKEITVSKDLYDTVP 345

Query: 327 KIDAK 331
           K   K
Sbjct: 346 KNKDK 350


>gi|323529337|ref|YP_004231489.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. CCGE1001]
 gi|323386339|gb|ADX58429.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           sp. CCGE1001]
          Length = 414

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 15/243 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S  V+D     +   K+ +   P AS++K+MT  +  +   +    L  ++ V     
Sbjct: 172 ARSVFVVDERTQTVLTEKEADRVMPIASVSKLMTAVVSLDARHALDAPL--RVTVQDQDF 229

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   S+  L   +  +    +   +  S N  + A     +G    F   M+ KA+ +G
Sbjct: 230 DKFTGSR--LSVGSVLSRHDMLHIALMSSENRAAAALSRDYAGGRPGFVAAMNAKARALG 287

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK---FRYRNR---II 224
           M+ T + N +GL   + ++TARD A L     + +P    Y + R    F    R     
Sbjct: 288 MRRTSFVNGTGLS-PHNVSTARDLARLVAAASR-YPLIRAYSTDRDQMVFPGGPRASLSY 345

Query: 225 TNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            N N L+     +I   KTG+   +G  +V  +     PI  VV+G P  ++     + +
Sbjct: 346 HNSNALVRGGDRSIVLQKTGFINEAGHCVVVRMMVHGRPIDIVVLGAPGPRDHIADVIRI 405

Query: 284 ITS 286
              
Sbjct: 406 RRW 408


>gi|319949460|ref|ZP_08023520.1| putative penicillin-binding protein [Dietzia cinnamea P4]
 gi|319436886|gb|EFV91946.1| putative penicillin-binding protein [Dietzia cinnamea P4]
          Length = 342

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 94/273 (34%), Gaps = 41/273 (15%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + ++ D++  ++   +    RY PASL K +   ++ + L  +       +       
Sbjct: 43  ASAWMISDLDTGEIVAARDPHGRYRPASLIKTLLATVVLDALDPE---WIVHVT-DADLE 98

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S + +     ++ ++ +  L+  S ND +      + G E+     M+  A  IG 
Sbjct: 99  GAEGSLVGVGPGGAYSVKRLLSGLLMSSGNDAAVVLAHQMGGIEQT-LEAMNTHAAAIGA 157

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY------------ 219
           ++T     +GL     ++TA D +++        P + +  + +   +            
Sbjct: 158 RSTYAATVNGLDGPGMMSTAYDMSLIFRDAMTR-PAFAEIVATQSTGFPGYPAGEGAGPP 216

Query: 220 ---------------------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
                                   ++ N N+LL       G KTG+T ++    + +   
Sbjct: 217 DPAEAPQNTGPTLRPDGVTVNPGFVVGNDNQLLYSYPGAIGGKTGFTDDARHTYIGAAER 276

Query: 259 KDDPIVAVVM-GMPTSQERDQKALELITSFLEK 290
               +  V++ G        Q+A  L+ +    
Sbjct: 277 DGRRLAVVLLDGTRVPAAPWQQAASLLDAAFAT 309


>gi|218680596|ref|ZP_03528493.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli CIAT 894]
          Length = 246

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 51/180 (28%), Positives = 87/180 (48%), Gaps = 5/180 (2%)

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            I G+++ F   M+ +A K+GM ++ + N +GL  K Q TTARD A+L + LR++FPQY 
Sbjct: 1   AIGGTQEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALRRDFPQYA 60

Query: 210 KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            YF++  F    + + + N L+ +    DG+KTG+   SGFN + S       +V+VV+G
Sbjct: 61  GYFALEGFTNGQQNVPSLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRTLVSVVLG 120

Query: 270 MPTSQERDQKALELITSFLEKK-----TLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
             +   R      L+      +     TL   + +         +   +   K  +  S+
Sbjct: 121 TDSLAARADATANLLQKGFTTQFPGSETLGSLRPYGPGQDQVADISADICSAKGAKIRSE 180


>gi|213419096|ref|ZP_03352162.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 243

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 1/125 (0%)

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII 224
            AK++G+ NT ++   GL    Q +TARD A+LG  L  + P  Y     ++F + N   
Sbjct: 1   YAKRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQ 60

Query: 225 TNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            N N+LL   + ++DG+KTG T  +G+N+V S    D  +++VV+G  T + R  ++ +L
Sbjct: 61  PNRNRLLWSTNLHVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 120

Query: 284 ITSFL 288
           +T   
Sbjct: 121 LTWGF 125


>gi|296138681|ref|YP_003645924.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Tsukamurella
           paurometabola DSM 20162]
 gi|296026815|gb|ADG77585.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Tsukamurella
           paurometabola DSM 20162]
          Length = 432

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 101/288 (35%), Gaps = 39/288 (13%)

Query: 32  GKILFLSIIMISMASELHAKPKYS-SIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYII 89
            ++    +++   A  +      +  +V D+    +   K    RY PAS  K++   + 
Sbjct: 85  ARLAGCGLVVPDGAPPVPQGIDSAGWLVADLTSGTVVAAKDPHGRYRPASTIKLLLAQVA 144

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
                  +L+L+T +  +   A Q      +     +T  Q +  L+  S ND + A   
Sbjct: 145 LR-----ELNLDTVVSGTAEDAAQEGDAAGVAPGGRYTVRQLLEGLLLISGNDTAHALAR 199

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            + G +      M++ AK +G ++T     SGL    Q T+  D A++     ++  ++ 
Sbjct: 200 QLGGVDTA-VAKMNDLAKSLGAKDTRAITPSGLDGPGQTTSPYDLALILQNALRD-KRFT 257

Query: 210 KYFSIRKFRYRN----------------------------RIITNHNKLLNKMHNIDGIK 241
              S R+  +                                I N N++L  +      K
Sbjct: 258 DIASTRQITFPGHPPVPTTGPATPLPPGGTPPPAPTSVAPYPIINENRMLTDVPGAVAGK 317

Query: 242 TGYTRNSGFNIVTSLRYKDDPIVAV-VMGMP-TSQERDQKALELITSF 287
            GYT ++    V ++       V V + G+  T      +   L+   
Sbjct: 318 NGYTDDAKKTYVGAVDRDGKRYVVVQLFGLAYTGNTYWDQFRRLLDYG 365


>gi|46205327|ref|ZP_00209803.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 261

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 50/130 (38%), Positives = 75/130 (57%)

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
           +M+  A KIGM+ + + N +GL +  Q T+ARD AIL   L ++FP     FSI   +Y 
Sbjct: 1   MMNETAHKIGMRESRWYNPNGLPEPRQWTSARDMAILARALMRDFPDQQGLFSISAIQYG 60

Query: 221 NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
             ++ NHN LL +    DG+KTG+  + GFN+V +       I+ VVMG P+++ERD KA
Sbjct: 61  KAVMANHNGLLGRYPGADGMKTGFICSGGFNVVATATRNGRRIITVVMGQPSARERDIKA 120

Query: 281 LELITSFLEK 290
            +L      +
Sbjct: 121 ADLFDYGFSQ 130


>gi|330445937|ref|ZP_08309589.1| penicillin-binding protein 7 [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490128|dbj|GAA04086.1| penicillin-binding protein 7 [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 298

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 100/262 (38%), Gaps = 26/262 (9%)

Query: 32  GKILFLSIIMISMASELHAK-----------PKYSSIVIDVNKNQMTGFKQDE-PRYPAS 79
             ILF ++  IS +S                   S+ VID++  +    K        AS
Sbjct: 4   AFILFFTLASISFSSVASINTSKLDPNKLQTASVSNYVIDLSTGKTLYKKNANVKMPIAS 63

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-LYLKEKTYFTTEQGILALITR 138
           LTK+MT  +  +     KL LN ++  + T   +  +    ++  +  +  + I   +  
Sbjct: 64  LTKLMTAMVTLDA----KLPLNEKLTFTPTDKKRMYNTYTRIRMGSTLSRGETIHIALMS 119

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S N  +        G    F   M+ KAK +GM NT + ++SGL D +  +TA D A + 
Sbjct: 120 SENLAAATLAGNYPGGYNAFIKAMNRKAKSLGMTNTHFVDSSGL-DPHNRSTASDVAKMV 178

Query: 199 ILLRKNFPQYYKYFSIRKFR------YRNRIITNHNKL-LNKMHNIDGIKTGYTRNSGFN 251
               K +P+  KY +                 TN N L   K   ++  KTG+   +G  
Sbjct: 179 RAAYK-YPEIRKYSTTPVHTAYFGKPNYKLGYTNTNALARGKKWTVNVTKTGFLDEAGRC 237

Query: 252 IVTSLRYKDDPIVAVVMGMPTS 273
           +          I+ V++     
Sbjct: 238 LGMVTTIDGKKILMVMLDSQGK 259


>gi|260663757|ref|ZP_05864644.1| D-alanyl-D-alanine [Lactobacillus fermentum 28-3-CHN]
 gi|260551706|gb|EEX24823.1| D-alanyl-D-alanine [Lactobacillus fermentum 28-3-CHN]
          Length = 431

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 70/316 (22%), Positives = 117/316 (37%), Gaps = 34/316 (10%)

Query: 53  KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             + I ID    Q+   K        AS++K++T+ +I + +++ KL  NT++ V+K  A
Sbjct: 58  AKAVIAIDATTGQVLYAKNANTQLAIASISKLITVGVIEQEIKAGKLSWNTKVKVTKEEA 117

Query: 112 T----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                   S + L     +T ++   A + +SA+  +         S   F   M    K
Sbjct: 118 KLSENTEYSNITLTAGKSYTVKELTEAAMIKSADAAAITLSRATGDSTASFVKKMQTFVK 177

Query: 168 KIGMQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFS 213
           K G+ +    N  GL               +     TA D A L   L KN+P       
Sbjct: 178 KAGVTDAKLYNQVGLTNSQMGSYGLKGVAKNAENEMTATDVAKLAQYLIKNYPSLLNITK 237

Query: 214 IRKFRYRNRIITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           +         +T  NK+L    +      IDG+KTG +  +G   V++  Y+   I+ VV
Sbjct: 238 MTSTTIDGTTVTTINKMLPGQSDAPTQVKIDGLKTGTSDKAGACFVSTGTYQGHRIITVV 297

Query: 268 MGMP-TSQERDQKALELITSFLEKKTLKHQQTH--------RKDNLSSTSLKKSLMIKKL 318
           +       ER  +   L      + T    Q          +    + T+  K  + KK 
Sbjct: 298 LHATGGGDERFTQTANLYHLIANEYTAYTVQPSVAAMVPNGKVTTTTLTTQGKITLWKKD 357

Query: 319 KRTYSQFKKIDAKAHS 334
               S    I++KA  
Sbjct: 358 GTLLSPSLAINSKAAD 373


>gi|75760329|ref|ZP_00740377.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218900160|ref|YP_002448571.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           G9842]
 gi|228903511|ref|ZP_04067635.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           4222]
 gi|74492183|gb|EAO55351.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218545764|gb|ACK98158.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           G9842]
 gi|228856132|gb|EEN00668.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
           4222]
          Length = 301

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 128/284 (45%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A    A    +PK +    + ID +  ++   K +DE
Sbjct: 23  MKRTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPKITGQYGVTIDADTGEILYGKREDE 82

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      + +I V++ A        K+ L+       ++ 
Sbjct: 83  RSYPASIAKMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 137

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 138 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADAIGNKVSP 197

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D AI+     K +P   +Y +  +       R+  I N+ +  L       G K+G + 
Sbjct: 198 YDIAIITKEALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSA 256

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T  +      ++     ++
Sbjct: 257 LGKYTVVTVDEKDGKRVINVVL-SSTRAQLYPDTKKMAHYAFQQ 299


>gi|317056264|ref|YP_004104731.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus
           albus 7]
 gi|315448533|gb|ADU22097.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus
           albus 7]
          Length = 407

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 65/254 (25%), Positives = 110/254 (43%), Gaps = 25/254 (9%)

Query: 57  IVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQ 113
           I++D + N++    K D+  YPASLTK+MTL +  E +   +     +      A    +
Sbjct: 98  ILLDCDSNEILAGLKYDQRIYPASLTKLMTLLVAVENIDDMQAKY--KFTKKDLAPLTKE 155

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           N S          T E  + A I  S  D +      I+G+EK F  LM++K   +G+ N
Sbjct: 156 NASCAGFVAGDEVTMEDLLYAAILPSGADGTLGLANAIAGNEKNFVKLMNDKVADLGLAN 215

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-------NRIITN 226
           T + NASGLH K   TTA+D A++     +N     K     K+  +          + +
Sbjct: 216 TNFANASGLHHKQHYTTAQDMAVITKACMEN-ETCRKVLCTEKWTTKPAKEYKEGIELES 274

Query: 227 --HNKLLNKMHNID----------GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ 274
             H++      + D          G KTG+T  +G+ + T + +K    +A+     T  
Sbjct: 275 IFHSRFGGYFVDADQDGAEDAKLLGGKTGFTDEAGYTLATVVEFKGKEYIAITTKSDTYL 334

Query: 275 ERDQKALELITSFL 288
              + A+ +  ++L
Sbjct: 335 ASVEDAILVFENYL 348


>gi|299782758|gb|ADJ40756.1| Serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus fermentum
           CECT 5716]
          Length = 389

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 113/298 (37%), Gaps = 26/298 (8%)

Query: 53  KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++I ID    Q+   K        AS++K++T+ +I + +++ KL  NT++ V+K  A
Sbjct: 58  AKAAIAIDATTGQVLYXKNANTKLAIASISKJITVGVIEQEIKAGKLSWNTKVKVTKEEA 117

Query: 112 T----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                   S + L     +T ++   A + +SA+  +         S   F   M    K
Sbjct: 118 KLSENTEYSNITLTAGKSYTVKELTEAAMIKSADAAAITLSRATGDSTASFVKKMQAFVK 177

Query: 168 KIGMQNTIYKNASGLHD--------------KNQITTARDQAILGILLRKNFPQYYKYFS 213
           K G+ +    N  GL +                   TA D A +   L KN+P       
Sbjct: 178 KAGVTDAKLYNQVGLTNSQMGSYGLKGVAKNAENEMTATDVAKIAQYLIKNYPSLLNITK 237

Query: 214 IRKFRYRNRIITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           +         +T  NK+L    +      IDG+KTG +  +G   V++  Y+   I+ VV
Sbjct: 238 LTSTTIDGTTVTTINKMLAGQSDAPTQVKIDGLKTGTSDKAGACFVSTGTYQGHRIITVV 297

Query: 268 MGMP-TSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
           +       ER  +   L      + T    Q      + +  +  + +  + K T  +
Sbjct: 298 LHATGGGDERFTQTANLYHLIANEYTAYTVQPSVAXTVPNGKVTTTTLTTQGKITLWK 355


>gi|229181304|ref|ZP_04308634.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
 gi|228602197|gb|EEK59688.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
          Length = 279

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 128/284 (45%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A    A    +P  +    + ID N  ++   K +DE
Sbjct: 1   MKRTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDANTGEILYGKREDE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      + +I V++ A        K+ L+       ++ 
Sbjct: 61  RSYPASIAKMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRPGEKLKRDEA 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 116 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADAIGNKVSP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D AI+     K +P   +Y +  +       R+  I N+ +  L       G K+G + 
Sbjct: 176 YDIAIITKEALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSA 234

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T ++      ++     ++
Sbjct: 235 LGKYTVVTVDEKDGKRVINVVL-SSTRKQLYPDTKKMAHYAFQQ 277


>gi|222098460|ref|YP_002532518.1| serine-type d-ala-d-ala carboxypeptidase (d-alanyl-d-alanine
           carboxypeptidase) [Bacillus cereus Q1]
 gi|221242519|gb|ACM15229.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
           carboxypeptidase) [Bacillus cereus Q1]
          Length = 279

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 128/284 (45%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A    A    +P  +    I ID +  ++   K +DE
Sbjct: 1   MKRTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      + +I V++ A        K+ L+       ++ 
Sbjct: 61  RSYPASIAKMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 116 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D AI+     K +P   +Y +  +       R+  I N+ +  L       G K+G + 
Sbjct: 176 YDIAIITKEALK-YPVVLEYMNSTRTTLHTSERSPKIANYGREELYDDPYAIGSKSGLSA 234

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T ++      ++     ++
Sbjct: 235 LGKYTVVTVDEKDGKRVINVVL-SSTRKQLYPDTKKMAHYAFQQ 277


>gi|182438052|ref|YP_001825771.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178466568|dbj|BAG21088.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 914

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 68/273 (24%), Positives = 120/273 (43%), Gaps = 20/273 (7%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
            S++++D     +      +P   AS+ K+MT ++I +    K       I V + A  +
Sbjct: 566 QSAVMVD-GVGSLGSEGAQKPAPIASVAKVMTAHVILQEHPLKGDEEGETITVDQKAEDE 624

Query: 114 ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
               + S   L +    T  Q +  L+  S N+ +     + +GSE  F   M++ AK +
Sbjct: 625 SQRPDESTAPLTKGQKLTQRQMLQLLMIPSGNNAARLLARWDAGSEDAFIDKMNDAAKDL 684

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR---IITN 226
           GM  + Y + SGL +K  ++TA DQ  L   + +N   + K   + +   +     I  N
Sbjct: 685 GMTGSTYTDPSGL-EKTTVSTATDQLKLAQAVMRN-EVFRKIVDMPEVEIKGIDGKIYNN 742

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSL--RYKDDPI--VAVVMGMPTSQERDQKALE 282
           +N LL     + GIKTG +  +G N++ S   +     +     VMG      R   +LE
Sbjct: 743 NNLLLQ--PGVSGIKTGSSTPAGGNLLWSANTKVDGKLLWIYGAVMGQQAGTGRVYDSLE 800

Query: 283 LITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMI 315
           L      + +LK  +  +K   S+T +KK  ++
Sbjct: 801 L----SLQNSLKLIKDAQKAATSATVVKKGDVV 829


>gi|228936311|ref|ZP_04099110.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823427|gb|EEM69260.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 273

 Score =  158 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 61/276 (22%), Positives = 123/276 (44%), Gaps = 22/276 (7%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    I ID +  ++   K +DE  YPAS+ 
Sbjct: 3   VMIATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIA 62

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A        K+ L+       ++ +  ++  S
Sbjct: 63  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 117

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        +  D A++  
Sbjct: 118 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAMITK 177

Query: 200 LLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTRNSGFNIVT 254
              K +P   +Y +  +       R+  I N+ +  L       G K+G +    + +VT
Sbjct: 178 EALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVT 236

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                   ++ VV+   T ++      ++     ++
Sbjct: 237 VGEKDGKRVINVVL-SSTRKQLYPDTKKMAHYAFQQ 271


>gi|42784193|ref|NP_981440.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           ATCC 10987]
 gi|42740124|gb|AAS44048.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           ATCC 10987]
          Length = 279

 Score =  158 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 128/284 (45%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A    A    +P  +    I ID +  ++   K +DE
Sbjct: 1   MKRTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGITIDADTGEILYGKREDE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      + +I V++ A        K+ L+       ++ 
Sbjct: 61  RSYPASIAKMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 116 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D AI+     K +P   +Y +  +       R+  I N+ +  L       G K+G + 
Sbjct: 176 YDIAIITKEALK-YPVVLEYMNSTRTTLHTSERSPKIANYGREELYDDPYAIGSKSGLSA 234

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T ++      ++     ++
Sbjct: 235 LGKYTVVTVDEKDGKRVINVVL-SSTRKQLYPDTKKMAHYAFQQ 277


>gi|253997566|ref|YP_003049630.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylotenera
           mobilis JLW8]
 gi|253984245|gb|ACT49103.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylotenera
           mobilis JLW8]
          Length = 334

 Score =  158 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 113/293 (38%), Gaps = 16/293 (5%)

Query: 3   QQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVN 62
           Q   QS A   +    Y +  ++   +L  +    ++      + L       ++V++  
Sbjct: 34  QVSTQSKASSKYKAVKYKTSALRVKTRLPARKAIAAVDSYDGTTPLKLASAK-ALVLNQQ 92

Query: 63  KNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYL 120
             ++   K    P   AS+TK+MT  ++ +      L ++  + +S         +   L
Sbjct: 93  TGEVLFAKNTNLPTPIASVTKLMTAMVMLDAH----LPMDELLNISDEDVDYLKHTTSRL 148

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
              T  T  + +   +  S N  ++A G    G    F   M+ KAK +GM  + + +++
Sbjct: 149 SVGTTLTRGEMLQLALMASENRAASALGRNYPGGSYAFVKAMNQKAKLLGMNASRFVDST 208

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSI--RKFRYRNR----IITNHNKLLNKM 234
           GL D N ++TA D A +      ++ +  +  ++  ++     R       N N L+   
Sbjct: 209 GL-DSNNVSTAEDLAKMVDAA-YHYAEIRQVTTLASQEITLYGRRSPLSFVNTNALVRGG 266

Query: 235 HNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
               G+ KTG+   +G  +V        P++ V++       R   A  +   
Sbjct: 267 KWDIGLSKTGFINEAGRCLVMQAHISGQPVIIVLLDSAGKLTRIGDANRIRKW 319


>gi|228923740|ref|ZP_04087018.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835869|gb|EEM81232.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 290

 Score =  158 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 128/284 (45%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYS---SIVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A    A    +P  +   +I ID +  ++   K +DE
Sbjct: 12  MKRTIVMIVMIATLFTGMIFFSYAQRQQAVRVNQPNITGQYAITIDADTGEILYGKREDE 71

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      + +I V++ A        K+ L+       ++ 
Sbjct: 72  RSYPASIAKMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 126

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 127 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADAIGNKVSP 186

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D A++     K +P   +Y +  +       R+  I N+ +  L       G K+G + 
Sbjct: 187 YDIAMITKEALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSA 245

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T  +      ++     ++
Sbjct: 246 LGKYTVVTVDEKDGKRVINVVL-SSTRAQLYPDTKKMAHYAFQQ 288


>gi|326778695|ref|ZP_08237960.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           cf. griseus XylebKG-1]
 gi|326659028|gb|EGE43874.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           cf. griseus XylebKG-1]
          Length = 890

 Score =  158 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 68/273 (24%), Positives = 120/273 (43%), Gaps = 20/273 (7%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
            S++++D     +      +P   AS+ K+MT ++I +    K       I V + A  +
Sbjct: 542 QSAVMVD-GVGSLGSEGAQKPAPIASVAKVMTAHVILQEHPLKGDEEGETITVDQKAEDE 600

Query: 114 ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
               + S   L +    T  Q +  L+  S N+ +     + +GSE  F   M++ AK +
Sbjct: 601 SQRPDESTAPLTKGQKLTQRQMLQLLMIPSGNNAARLLARWDAGSEDAFIDKMNDAAKDL 660

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR---IITN 226
           GM  + Y + SGL +K  ++TA DQ  L   + +N   + K   + +   +     I  N
Sbjct: 661 GMTGSTYTDPSGL-EKTTVSTATDQLKLAQAVMRN-EVFRKIVDMPEVEIKGIDGKIYNN 718

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSL--RYKDDPI--VAVVMGMPTSQERDQKALE 282
           +N LL     + GIKTG +  +G N++ S   +     +     VMG      R   +LE
Sbjct: 719 NNLLLQ--PGVSGIKTGSSTPAGGNLLWSANTKVDGKLLWIYGAVMGQQAGTGRVYDSLE 776

Query: 283 LITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMI 315
           L      + +LK  +  +K   S+T +KK  ++
Sbjct: 777 L----SLQNSLKLIKDAQKAATSATVVKKGDVV 805


>gi|311897918|dbj|BAJ30326.1| putative peptidase S11 family protein [Kitasatospora setae KM-6054]
          Length = 740

 Score =  158 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 63/235 (26%), Positives = 116/235 (49%), Gaps = 13/235 (5%)

Query: 49  HAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
            AK + ++ V+ V    + G  +++P   AS+TK+M  Y+I +    KK      + V K
Sbjct: 392 PAKGQAAAEVVGV--GPLGGSGEEKPVPIASVTKVMNAYLILQAHPLKKGESGPTLTVDK 449

Query: 109 TAATQNP----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
            AA ++     S + LKE    +  + +  L+  SAN+V+     + SGSE++F   M+ 
Sbjct: 450 QAAQESGNADESTVTLKEGQQLSEYEALEMLMLPSANNVARLLARWDSGSEEEFVKKMNA 509

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII 224
            A ++GM NT Y + +G  + N  +TA+DQ  L   + +    + +  +    ++  + +
Sbjct: 510 TAAQLGMPNTTYADPAGYDN-NTKSTAKDQLKLAEKVMQ-LEIFKQIVAEPDTKFNGQRV 567

Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK----DDPIVAVVMGMPTSQE 275
            N N LL K  NI G+KTG +  +   ++ +   +       I+ V +G P ++E
Sbjct: 568 FNTNALLGKNGNI-GVKTGSSTPAQSCLMWAAVKEIGGVQRMILGVTLGQPQTKE 621


>gi|54309061|ref|YP_130081.1| D-alanyl-D-alanine endopeptidase [Photobacterium profundum SS9]
 gi|46913493|emb|CAG20279.1| Hypothetical D-alanyl-D-alanine endopeptidase [Photobacterium
           profundum SS9]
          Length = 316

 Score =  158 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 59/300 (19%), Positives = 116/300 (38%), Gaps = 33/300 (11%)

Query: 32  GKILFLSIIMISMASELHAK-----------PKYSSIVIDVNKNQMTGFKQDEPRYP-AS 79
             +   S++ + +A+  HA               S+ V D+   +    K      P AS
Sbjct: 22  ALLFIFSLVSVGIATSAHATTAKLDPNNIQTASVSTYVTDLKSGKTLYKKNQNVVMPLAS 81

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIP---VSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           +TK+MT  +  +     KL L+ +I    + K       +++ ++  +  +  + I   +
Sbjct: 82  ITKLMTAMVTLDA----KLPLDEKITFKPIDKKRMYNGYTRIRME--SRLSRGETIHIAL 135

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S N  + A      G    F   M+ KAK +GM NT + ++SGL D   ++TA D   
Sbjct: 136 MSSENLAAAALAGSYPGGYDAFIKAMNAKAKALGMTNTRFVDSSGL-DPKNVSTASDINK 194

Query: 197 LGILLRKNFPQYYKYFSIR----KFRYRNRII--TNHNKL-LNKMHNIDGIKTGYTRNSG 249
           +     K + +  +Y +       F      +  TN N L   K  +++  KTGY   +G
Sbjct: 195 MAKAAYK-YTKIREYSTTPVHTVYFTKPKYKLGYTNTNVLARGKKWDVEMTKTGYLDIAG 253

Query: 250 FNIVTSLRYKDDPIVAVVMGMP---TSQERDQKALELITSFLEKKTLKHQQTHRKDNLSS 306
             +    +     I+ V++      T      +  + + +    K     + +++  L+ 
Sbjct: 254 HCLTMITKINGKEILMVMLDAQGKLTPIGDAGRIKKWLQTGYSGKISDSAKNYQQVKLAD 313


>gi|229199155|ref|ZP_04325838.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
 gi|228584426|gb|EEK42561.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
          Length = 273

 Score =  158 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 62/276 (22%), Positives = 123/276 (44%), Gaps = 22/276 (7%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    I ID +  ++   K +DE  YPAS+ 
Sbjct: 3   VMIATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIA 62

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A        K+ L+       ++ +  ++  S
Sbjct: 63  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 117

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        +  D AI+  
Sbjct: 118 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAIITK 177

Query: 200 LLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTRNSGFNIVT 254
              K +P   +Y +  +       R+  I N+ +  L       G K+G +    + +VT
Sbjct: 178 EALK-YPVVLEYMNSTRTTLHTSERSPKIANYGREELYDDPYAIGSKSGLSALGKYTVVT 236

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                   ++ VV+   T ++      ++     ++
Sbjct: 237 VDEKDGKRVINVVL-SSTRKQLYPDTKKMAHYAFQQ 271


>gi|167760670|ref|ZP_02432797.1| hypothetical protein CLOSCI_03055 [Clostridium scindens ATCC 35704]
 gi|167661557|gb|EDS05687.1| hypothetical protein CLOSCI_03055 [Clostridium scindens ATCC 35704]
          Length = 324

 Score =  158 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 95/238 (39%), Gaps = 24/238 (10%)

Query: 56  SIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           SI+ D++          + R YPASLTK+MT  +  E  Q  +  +            +N
Sbjct: 53  SILTDLDSGNALAEHNAQDRIYPASLTKIMTAILAIENTQDMEEVITLPTDFFSKLYIEN 112

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            S    +       +  +  ++  S  +   AF E I+GSE+ F  LM+ KA ++G++NT
Sbjct: 113 ASMAGFQPGEQVRLKDLLYGMLLPSGAECCLAFCERIAGSEEAFVRLMNKKAGELGLENT 172

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-------RNRIITNH 227
            + N++GLHD    +T +D + L     KN   +   F+  ++         +     + 
Sbjct: 173 HFCNSTGLHDSEHYSTVKDISALLQYALKN-ETFRAAFTSSQYSTLPSEQHPKGFTFYST 231

Query: 228 NKLLNKMHNIDGIK----------TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
                    ++  K          TGYT+ +G  + +        ++ V      + +
Sbjct: 232 -----MFECMESTKFTGGKIIGGKTGYTKEAGLCLASLAEINGKEVILVTANADGTHQ 284


>gi|229094119|ref|ZP_04225203.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
 gi|228689331|gb|EEL43150.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
          Length = 301

 Score =  158 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 128/284 (45%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A    A    +P  +    I ID +  ++   K +DE
Sbjct: 23  MKRTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDE 82

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      N +I V++ A        K+ L+       ++ 
Sbjct: 83  RSYPASIAKMMTTLLLLENVKE-----NEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 137

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 138 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSP 197

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D A++     K +P   +Y +  +       R+  I N+ +  L       G K+G + 
Sbjct: 198 YDIAMITKEALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSA 256

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T ++      ++     ++
Sbjct: 257 LGKYTVVTVDEKDGKRVINVVL-SSTRKQLYPDTKKMAHYAFQQ 299


>gi|161138122|gb|ABX58032.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum brasilense]
          Length = 276

 Score =  158 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 57/143 (39%), Positives = 89/143 (62%)

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
            + GSE KFA +M+ KA++ GM+NT++ N++GL +  Q+TTAR  +IL   +  +  +YY
Sbjct: 2   ALGGSEAKFAEMMTRKAREXGMRNTVFXNSNGLPNMQQVTTARXFSILSRAMLSDHSRYY 61

Query: 210 KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            YFS R F Y  R + NHN+L+++   +DGIKTGYT  SGFN+  S       +VAVV+G
Sbjct: 62  PYFSRRAFVYGGRSLNNHNRLMSRYEGMDGIKTGYTVASGFNLAASAVRDGRRLVAVVLG 121

Query: 270 MPTSQERDQKALELITSFLEKKT 292
             ++  RD +   ++    +K +
Sbjct: 122 GKSAASRDARMEAILDKAFDKPS 144


>gi|256848334|ref|ZP_05553777.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714932|gb|EEU29910.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus coleohominis
           101-4-CHN]
          Length = 417

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/304 (19%), Positives = 118/304 (38%), Gaps = 36/304 (11%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMASELHAK----PKYSSIVIDVNKNQMTGFKQ-DE 73
                +Q  + L   ++  S    +  S   A        ++I +D    Q+   +  ++
Sbjct: 1   MKKRLMQLGLLLATFVMIFSCFTAAFISTAQADQTKLEAKAAITMDAQTGQILFQQNANQ 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP----SKLYLKEKTYFTTE 129
               AS TK++TL +I + +   KL  N +I +++  A  +     S + LK    +T  
Sbjct: 61  KLAVASCTKILTLAVIEQDIADGKLSWNQKIKINRKVAKTSTDWHFSNVELKAGHRYTVR 120

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD----- 184
               +++  SA+  + A     +GS   F   M   AKK G+ +    N  GL +     
Sbjct: 121 SLCESMMIVSADGSAEALALASAGSTAAFNKKMQAVAKKAGVHDAKIYNMIGLSNGELGS 180

Query: 185 ---------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-----NRIITNHNKL 230
                         +A+D A++   L   +P            ++     +  + N N +
Sbjct: 181 NGIKGVSKKAENAFSAKDMALISRYLVTKYPDALNITKATNVEFKVDDKQSYNMLNINGM 240

Query: 231 LNKMHN------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP--TSQERDQKALE 282
           L    N      +DG+KTG T  +G   V +  + +  ++ VV+G       ++ ++  +
Sbjct: 241 LPNNGNAPKNGTMDGLKTGSTDKAGNCFVGTGVFNNRRLITVVLGTDIHDYSKQFKETNK 300

Query: 283 LITS 286
           ++ +
Sbjct: 301 MLEA 304


>gi|254387230|ref|ZP_05002494.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. Mg1]
 gi|194346039|gb|EDX27005.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. Mg1]
          Length = 424

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 101/269 (37%), Gaps = 25/269 (9%)

Query: 42  ISMASELHAKPKY----SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSK 96
           +++     A P+     S IV D    ++        R  PAS  KM+    +   L   
Sbjct: 73  VNLLPGAPALPESLTGRSWIVADAGSGEVLAAHNAHWRLPPASTMKMLFADTVLPTLPKD 132

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           ++H  T+  +S     Q  S + +KE   ++     L +  RS ND        ++G  +
Sbjct: 133 QVHKVTEEEMSD--VGQGSSLVGVKEDYEYSVHDLWLGVFLRSGNDAVHVL-SAMNGGIE 189

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI--LLRKNFPQYYKYF-- 212
           K    M   A+++   +T   +  G     Q+++A D  ++    L +++F +Y      
Sbjct: 190 KTVKDMQAHAEELQALDTHVVSPDGYDAPEQVSSAYDLTLIARSGLQKQDFKEYCGTVSA 249

Query: 213 ----SIRKFRYRN-RIITNHNKL------LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
               S    + R+   I N N+L      L     I G+K G T  +G     + +    
Sbjct: 250 QFPGSQEAGKARDSFEIQNTNRLMTGAGGLAPYKGIAGVKNGNTTMAGSTFTGAAQRDGR 309

Query: 262 PIVAVVMGMPTS--QERDQKALELITSFL 288
            ++  VM   +       ++  +L+    
Sbjct: 310 TLLVTVMNPNSGGLNSVYEETADLLDWGF 338


>gi|228475540|ref|ZP_04060258.1| penicillin binding protein 4 [Staphylococcus hominis SK119]
 gi|314935406|ref|ZP_07842759.1| penicillin-binding protein 4 [Staphylococcus hominis subsp. hominis
           C80]
 gi|228270322|gb|EEK11757.1| penicillin binding protein 4 [Staphylococcus hominis SK119]
 gi|313656741|gb|EFS20480.1| penicillin-binding protein 4 [Staphylococcus hominis subsp. hominis
           C80]
          Length = 383

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 100/231 (43%), Gaps = 24/231 (10%)

Query: 64  NQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKL 118
            Q+   F+ ++   PASL+KMMTLY+  E +   KL L+ ++ ++    + +   N + +
Sbjct: 57  GQILYNFQGNKEADPASLSKMMTLYLTLEAVHQGKLKLDDKVKITSAYDQLSKKPNLTSV 116

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            L +   +T +  +      S+N  +   GE +SG+   F   M+ +AK   M++T + N
Sbjct: 117 PLNQGQIYTIKDLLTQAALPSSNSAAMILGEQVSGNTSTFTDKMNAQAKAFHMKHTHFVN 176

Query: 179 ASGLHDK--NQ------------ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII 224
            +G  +    Q             +T+ D AIL   L    P+      + +   +    
Sbjct: 177 PAGAANDLLGQQAPKKYRKDIYPKSTSEDIAILSHHLIAKHPKILNITQLSQDTQKGYTF 236

Query: 225 TNHNKLLNKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
            N N  +          DG+KTG T + G+NI  + +     +  VVM + 
Sbjct: 237 NNTNLSIKHEPLYLKGTDGLKTG-TSDKGYNIALTNQQNHLRLNEVVMNVA 286


>gi|229916043|ref|YP_002884689.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Exiguobacterium sp. AT1b]
 gi|229467472|gb|ACQ69244.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Exiguobacterium sp. AT1b]
          Length = 337

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 101/235 (42%), Gaps = 20/235 (8%)

Query: 59  IDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI-PV--SKTAATQN 114
           ++V   ++   K  ++  +PAS TK+MT  + +E   +    L+  I  +  S      +
Sbjct: 92  VNVTNQEILIDKNANDRVFPASTTKLMTALLAYEKASAAN-ELDQPIITIQQSTLDIPWD 150

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
               +L      T  Q + A +  S ND + +  E+ SGS   F  LM+++AK +G+  T
Sbjct: 151 SHIAHLAIGDTLTVRQALYATLLESGNDAANSLAEYTSGSTNAFVQLMNDRAKVLGLTGT 210

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR--------YRNRIITN 226
            + NA G  D N  TTA D A +       +P+  +     +F+           R    
Sbjct: 211 NFVNAHGYSDPNHYTTANDMAKIAFAFS-TYPELIEIAGTYEFKAEFKDKDGNGKRRWWY 269

Query: 227 H-----N-KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           H     N + +N    +   KTGYT  SG+ +V  +++  +  + V M   + Q 
Sbjct: 270 HLGSSVNERSVNYSKFVTATKTGYTDESGYTMVFIMKHNSETYILVTMQAKSGQT 324


>gi|167835875|ref|ZP_02462758.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           thailandensis MSMB43]
          Length = 369

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 93/235 (39%), Gaps = 17/235 (7%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-- 114
           V+D         K      P AS+TK+M   +  +     +  ++  + VS         
Sbjct: 134 VVDERTGTALIEKNANRVVPIASVTKLMMSMVALD----TRAPMSRPLRVSAQDRDYEKF 189

Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+  LK  +  +    +   +  S N  + A      G    F   M+ KA+ +GM+ 
Sbjct: 190 TGSR--LKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFVAAMNRKARTLGMKR 247

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-IRKFRYRNR---IITNHNK 229
           T + NA+GL     ++TARD + L     + +P    + +   K  + NR      N N 
Sbjct: 248 THFVNATGLS-PRNVSTARDLSRLVAAANR-YPHIKTFSTDTSKTVFPNRGELRYVNSNA 305

Query: 230 LLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           L+     +I   KTG+   +G  +V     +  P+  V++G P   +    A ++
Sbjct: 306 LVRAGDSSIVLQKTGFINEAGHCVVLRYAVRGRPVDIVLLGAPGPHDHVADAAKI 360


>gi|324328943|gb|ADY24203.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 279

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 127/284 (44%), Gaps = 24/284 (8%)

Query: 24  IQRNIQL--MGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I +  M   LF  +I  S A    A    +P  +    I ID +  ++   K +DE
Sbjct: 1   MKRTIVMIVMMATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      + +I V++ A        K+ L+       ++ 
Sbjct: 61  RSYPASIAKMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 116 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D AI+     K +P   +Y +  +       R+  I N+ +  L       G K+G + 
Sbjct: 176 YDIAIITKEALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSA 234

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T ++      ++     ++
Sbjct: 235 LGKYTVVTVDEKDGKRVINVVL-SSTRKQLYPDTKKMAHYAFQQ 277


>gi|89894320|ref|YP_517807.1| hypothetical protein DSY1574 [Desulfitobacterium hafniense Y51]
 gi|89333768|dbj|BAE83363.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 352

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/257 (25%), Positives = 121/257 (47%), Gaps = 22/257 (8%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKK-LHLNT 102
           A++       S +++++   +    K  D  R PAS  K++T  ++ E LQ+ + + L  
Sbjct: 81  ANQFTPPEDSSYLMLNLQTGERLLEKNGDTHRAPASTVKLLTGLLVHEKLQADELITLGE 140

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           ++ V         S L  K       +    A+   SAND + A      G+++KF   M
Sbjct: 141 EVKV-------EGSVLGFKPGDKILVKDLFTAMYVYSANDAANALAVAAYGTKEKFIQAM 193

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN- 221
           ++ A ++G Q++ +K A G+  ++Q TTA+D AI+   + +  P    Y + +K      
Sbjct: 194 NSYAAELGCQDSQFKTADGMPAEDQYTTAKDLAIIAAKVTET-PVLMDYINQKKASVEWT 252

Query: 222 --------RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                   R I+N N+LL       G+KTG T  +G  +VT +  +D  ++ V++G   S
Sbjct: 253 DANGWKQVREISNTNQLLGIYPGDQGLKTGTTTEAGQCLVTYITNEDGDLLLVLLG---S 309

Query: 274 QERDQKALELITSFLEK 290
           ++R    +EL+   + K
Sbjct: 310 KQRYTDTVELLDQGMAK 326


>gi|301056499|ref|YP_003794710.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis CI]
 gi|300378668|gb|ADK07572.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 279

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 128/284 (45%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A    A    +P  +    I ID +  ++   K +DE
Sbjct: 1   MKRTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      + +I V++ A        K+ L+       ++ 
Sbjct: 61  RSYPASIAKMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 116 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D A++     K +P   +Y +  +       R+  I N+ +  L       G K+G + 
Sbjct: 176 YDIAMITKEALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSA 234

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        I+ VV+   T ++      ++     ++
Sbjct: 235 LGKYTVVTVDEKDGKRIINVVL-SSTRKQLYPDTKKMAHYAFQQ 277


>gi|29832456|ref|NP_827090.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces avermitilis
           MA-4680]
 gi|29609575|dbj|BAC73625.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           avermitilis MA-4680]
          Length = 446

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 99/268 (36%), Gaps = 24/268 (8%)

Query: 38  SIIMISMASELHAK-PKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYII---FEY 92
           S + +S AS L  K    + +V D    ++        R  PAS  KM+    +   FE 
Sbjct: 67  SGVQVSGASGLPKKLTARAWLVADHESGEVLAAYNAHRRLAPASTLKMLFADTVLKKFER 126

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
            +   +  +  + +         S + ++  T +T EQ  L +  RS ND        ++
Sbjct: 127 AERHTVTADDLVGI-----PAGSSLVGVQAGTTYTVEQLWLGVFLRSGNDAVHVL-SHMN 180

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF 212
           G   +    M  KA+ +   +T   +  G   K Q+++A D  +       +   +  Y 
Sbjct: 181 GGVAETVAQMQAKAEDLQALDTHVVSPDGFDHKGQLSSAYDLTLFARHGLAD-ADFRDYC 239

Query: 213 SIRKFRY-----RNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           + R   +     +   I N ++LL           + G+K GYT ++G     +      
Sbjct: 240 ATRTADFPAGRKKTFQIQNTDRLLTGAWGMETYDGLIGVKNGYTSHAGNTFTGAATRGGR 299

Query: 262 PIVAVVMGMPT-SQERDQKALELITSFL 288
            ++  VM   +      ++  +L+    
Sbjct: 300 TLLVTVMHPKSGGNGVYEETAKLLDWGF 327


>gi|30265054|ref|NP_847431.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Ames]
 gi|47530558|ref|YP_021907.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|47567050|ref|ZP_00237767.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus
           G9241]
 gi|49187867|ref|YP_031120.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Sterne]
 gi|52140522|ref|YP_086306.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
           carboxypeptidase) [Bacillus cereus E33L]
 gi|65317000|ref|ZP_00389959.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A2012]
 gi|118480099|ref|YP_897250.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
           Hakam]
 gi|165870851|ref|ZP_02215503.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0488]
 gi|167634882|ref|ZP_02393200.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0442]
 gi|167639927|ref|ZP_02398195.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0193]
 gi|170685975|ref|ZP_02877198.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0465]
 gi|170706954|ref|ZP_02897411.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0389]
 gi|177652350|ref|ZP_02934853.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0174]
 gi|190567200|ref|ZP_03020115.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis Tsiankovskii-I]
 gi|196032895|ref|ZP_03100308.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           W]
 gi|196040599|ref|ZP_03107899.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           NVH0597-99]
 gi|218906208|ref|YP_002454042.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH820]
 gi|227817784|ref|YP_002817793.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. CDC 684]
 gi|228917642|ref|ZP_04081184.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228930039|ref|ZP_04093049.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228948739|ref|ZP_04111017.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229124549|ref|ZP_04253734.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
 gi|229601870|ref|YP_002869251.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0248]
 gi|254687345|ref|ZP_05151202.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254725358|ref|ZP_05187141.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A1055]
 gi|254735318|ref|ZP_05193026.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254740584|ref|ZP_05198275.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Kruger B]
 gi|254753154|ref|ZP_05205190.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Vollum]
 gi|254761497|ref|ZP_05213518.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Australia 94]
 gi|30259731|gb|AAP28917.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
           Ames]
 gi|47505706|gb|AAT34382.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|47556368|gb|EAL14702.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus
           G9241]
 gi|49181794|gb|AAT57170.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. Sterne]
 gi|51973991|gb|AAU15541.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
           carboxypeptidase) [Bacillus cereus E33L]
 gi|118419324|gb|ABK87743.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
           Hakam]
 gi|164713360|gb|EDR18885.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0488]
 gi|167512008|gb|EDR87386.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0193]
 gi|167529632|gb|EDR92381.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0442]
 gi|170128057|gb|EDS96927.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0389]
 gi|170670439|gb|EDT21179.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0465]
 gi|172082356|gb|EDT67422.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0174]
 gi|190561704|gb|EDV15674.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis Tsiankovskii-I]
 gi|195994324|gb|EDX58279.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           W]
 gi|196028731|gb|EDX67338.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
           NVH0597-99]
 gi|218535970|gb|ACK88368.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH820]
 gi|227003439|gb|ACP13182.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
           CDC 684]
 gi|228658889|gb|EEL14544.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
 gi|228811046|gb|EEM57389.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228829538|gb|EEM75165.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842019|gb|EEM87124.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229266278|gb|ACQ47915.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
           anthracis str. A0248]
          Length = 279

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 128/284 (45%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A    A    +P  +    I ID +  ++   K +DE
Sbjct: 1   MKRTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      + +I V++ A        K+ L+       ++ 
Sbjct: 61  RSYPASIAKMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 116 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D A++     K +P   +Y +  +       R+  I N+ +  L       G K+G + 
Sbjct: 176 YDIAMITKEALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSA 234

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T ++      ++     ++
Sbjct: 235 LGKYTVVTVDEKDGKRVINVVL-SSTRKQLYPDTKKMAHYAFQQ 277


>gi|261222159|ref|ZP_05936440.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94]
 gi|265998124|ref|ZP_06110681.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1]
 gi|260920743|gb|EEX87396.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94]
 gi|262552592|gb|EEZ08582.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1]
          Length = 199

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 82/158 (51%), Gaps = 6/158 (3%)

Query: 56  SIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +++ID     +   K  D+P  PASL K+MT  ++FE L+  +  L T  PVS+ A    
Sbjct: 42  ALLIDDRSGTVLLSKGADKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEYAWRTG 101

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S ++ + K+  T    +  +I +SAND +    E ++GSE+ FA  M+ +AK++
Sbjct: 102 GAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQRAKEL 161

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
           G+ ++ + N++GL    Q+ T  D   L   +    P+
Sbjct: 162 GLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIHAAHPE 199


>gi|333009575|gb|EGK29027.1| D-alanyl-D-alanine carboxypeptidase dacC domain protein [Shigella
           flexneri K-272]
 gi|333020502|gb|EGK39765.1| D-alanyl-D-alanine carboxypeptidase dacC domain protein [Shigella
           flexneri K-227]
          Length = 154

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 43/128 (33%), Positives = 71/128 (55%), Gaps = 1/128 (0%)

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           M+  AKK+G+ NT ++   GL    Q +T RD A+LG  L  + P+ Y     ++F +  
Sbjct: 1   MNGYAKKLGLTNTTFQTVHGLDAPGQFSTVRDMALLGKALIHDVPEEYAIHKEKEFTFNK 60

Query: 222 RIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
               N N+LL   + N+DG+KTG T  +G+N+V S    D  +++VV+G  T + R  ++
Sbjct: 61  IRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNES 120

Query: 281 LELITSFL 288
            +L+T   
Sbjct: 121 EKLLTWGF 128


>gi|239979864|ref|ZP_04702388.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces albus
           J1074]
          Length = 408

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 98/283 (34%), Gaps = 27/283 (9%)

Query: 30  LMGKILFLSIIMISMASELHAKPKY----SSIVIDVNKNQMTGFKQDE-PRYPASLTKMM 84
           + G  L  +   ++    +   PK     S IV D     +           PAS  KM+
Sbjct: 37  IGGARLGQAGTQVNAGPGVPKLPKKLTGRSWIVADAENGDVLAAHNAHWKLPPASTMKML 96

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
               +   L   + HL   +   + A      S + +KE   +T     L +   S ND 
Sbjct: 97  FADTVLPKLPKDEKHL---VTDEELAGVGAGSSLVGVKEDQTYTVHDLWLGVFLSSGNDA 153

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI--LL 201
                  ++G   +    M+ +A+++   +T   +  G   K Q+++A D  ++    + 
Sbjct: 154 VHVL-SAMNGGIDRTVADMNARAEELQALDTHVVSPDGYDAKGQLSSAYDLTLIARSGMQ 212

Query: 202 RKNFPQYYKYFSIR-------KFRYRNRIITNHNKLL------NKMHNIDGIKTGYTRNS 248
            K+F +Y    S           +  +  I N N+LL       +   I G+K G T N+
Sbjct: 213 EKDFREYCATVSAEFPGEKKKGKKREHFGIQNTNRLLTGAYGMERYEGIAGVKNGNTTNA 272

Query: 249 GFNIVTSLRYKDDPIVAVVMG--MPTSQERDQKALELITSFLE 289
           G             ++  VM      S    Q+   L     +
Sbjct: 273 GATFTGVAERGGRVLLVTVMNPDGKESNAVYQETARLFDWGFQ 315


>gi|223043679|ref|ZP_03613723.1| penicillin binding protein 4 [Staphylococcus capitis SK14]
 gi|222442957|gb|EEE49058.1| penicillin binding protein 4 [Staphylococcus capitis SK14]
          Length = 388

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/304 (21%), Positives = 130/304 (42%), Gaps = 35/304 (11%)

Query: 64  NQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKL 118
            Q+   + +++   PASLTKMMT+Y+  + ++S K+H+  +I ++   A      N S +
Sbjct: 57  GQILYNYNENKKVDPASLTKMMTMYLTLDAVKSGKIHMKDKIKITSKQAQLSQKSNLSSV 116

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            L+    +T +  +      S+N  +   GE +SGS   F   M+ +AK   M++T + +
Sbjct: 117 PLEAGQTYTVKDILSQTALASSNAAALILGEKVSGSTSTFTDKMNQQAKTFHMKDTHFTS 176

Query: 179 ASGLHDK--------------NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII 224
            +G   +                 +T++D  I+   + K  P+  K    +    + +  
Sbjct: 177 PAGADTELLGSSAPQKYKNQGKTSSTSKDMNIMMYHMIKEHPEILKTTQNKSDTQKGQSF 236

Query: 225 TNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM---PTSQE-- 275
            + N  L          DG+KTG T +SG+++  + +     +   ++ +   P+     
Sbjct: 237 ESTNLSLKGQPKYYKGTDGLKTG-TSDSGYSLALTNKQHGLRLNETILDVTPYPSETAKL 295

Query: 276 -RDQKALELITSF---LEKKTLKHQQTHRKDNLSSTSLKK--SLMIKKLKRTYSQFKKID 329
            R++ A +++  +    E K +  +  H+ D    T  K    ++ K  K   +   K +
Sbjct: 296 NRNEIANDMMKYYRKQYEYKKVLSKGEHQIDGKKYTVKKDLYDVVPKHKKWYIAINDKGN 355

Query: 330 AKAH 333
           A  H
Sbjct: 356 AYVH 359


>gi|182436490|ref|YP_001824209.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178465006|dbj|BAG19526.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 571

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 56/270 (20%), Positives = 98/270 (36%), Gaps = 26/270 (9%)

Query: 42  ISMASELHAKPKY----SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSK 96
           +++       PK     S IV D     +        R  PAS  KM+    +   LQ  
Sbjct: 159 VNLGPGAPVLPKELTGRSWIVADAENGDVLAAHNAHWRLPPASTLKMLFADTVLPALQP- 217

Query: 97  KLHLNTQIPVSKTA-ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
              L  ++   + +   +  S + +KE   +T     L +  RS ND      E   G  
Sbjct: 218 -TTLTHKVTEGELSGVGEGSSLVGIKEDHTYTVHDLWLGVFLRSGNDAVHVLSEMYGGVP 276

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI--LLRKNFPQYYKYFS 213
           +     M   A+++   +T   +  G     Q+++A D  ++    L +K+F +Y    S
Sbjct: 277 QT-VSAMQKHAEELQALDTRVVSPDGYDAPGQVSSAYDLTLIARSGLQKKDFREYAATAS 335

Query: 214 ------IRKFRYRN-RIITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
                  +K + R    I N N+L+      +    I G+K GYT ++G           
Sbjct: 336 ADFPGEEKKGKKRESFEIQNTNRLITGDIGVDPYQGIAGVKNGYTTHAGNTFTGVAERNG 395

Query: 261 DPIVAVVMG--MPTSQERDQKALELITSFL 288
             ++  VM      S    ++A  L+    
Sbjct: 396 KVLLVTVMNPSAEESHAVYKEAAHLLDWGF 425


>gi|219668743|ref|YP_002459178.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
           hafniense DCB-2]
 gi|219539003|gb|ACL20742.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
           hafniense DCB-2]
          Length = 352

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/257 (25%), Positives = 121/257 (47%), Gaps = 22/257 (8%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKK-LHLNT 102
           A++       S +++++   +    K  D  R PAS  K++T  ++ E LQ+ + + L  
Sbjct: 81  ANQFTPPEDSSYLMLNLQTGERLLEKNGDTHRAPASTVKLLTGLLVHEKLQADELITLGE 140

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           ++ V         S L  K       +    A+   SAND + A      G++++F   M
Sbjct: 141 EVKV-------EGSVLGFKPGDKILVKDLFTAMYVYSANDAANALAVAAYGTKEQFIQAM 193

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN- 221
           ++ A ++G Q++ +K A G+  ++Q TTA+D AI+   + +  P    Y + +K      
Sbjct: 194 NSYAAELGCQDSQFKTADGMPAEDQYTTAKDLAIIAAKVTET-PVLMDYINQKKASVEWT 252

Query: 222 --------RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                   R I+N N+LL       G+KTG T  +G  +VT +  +D  ++ V++G   S
Sbjct: 253 DANGWKQVREISNTNQLLGIYPGDQGLKTGTTTEAGQCLVTYITSEDGDLLLVLLG---S 309

Query: 274 QERDQKALELITSFLEK 290
           ++R    +EL+   + K
Sbjct: 310 KQRYTDTVELLDQGMAK 326


>gi|296111124|ref|YP_003621505.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc kimchii IMSNU
           11154]
 gi|295832655|gb|ADG40536.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc kimchii IMSNU
           11154]
          Length = 421

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 149/350 (42%), Gaps = 46/350 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP------KYSSIVIDVNKNQMTGFKQDEPR-Y 76
           ++R   +   ++ L ++  ++++   AKP        S+IVID    Q+   K  +    
Sbjct: 1   MRRIKVIGVSVVMLFLMTTTVSASTLAKPLDIKQDVSSAIVIDAGTGQILAEKNSDELGP 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-----ATQNPSKLYLKEKTYFTTEQG 131
            AS +K++T Y + + + S K+  + ++ +SK A      +   S L +K     T  + 
Sbjct: 61  IASQSKLLTAYAVLKAIDSGKIKWSDKVTISKKADLSKQDSHMFSHLAVKAGDRLTVREL 120

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD----KNQ 187
              +IT S+ND + A  E+++  +   A  + + A+++ +  + + N++G  +    +N+
Sbjct: 121 YNTMITLSSNDSAFALAEYLTPKKMTTAQALQSWAEELQLTKSKWYNSAGQVNQDAFENK 180

Query: 188 ITTARD----------QAILGILLRKNFPQYYKYFSIRKFRY---RNRIIT-------NH 227
           +T+A D           A++   + +  P   K  +     Y   +N ++        N 
Sbjct: 181 VTSAPDNAVNLASPKHVAMIAREIVRLDPDIRKLATSTHVSYHLTKNYVVNEPTEMTKNW 240

Query: 228 NKLLNKMHNID-GIKTGYTRNSGFNIVTSLRY-KDDPIVAVVMGMPT---SQERDQKALE 282
             L+N  H I  G+KTG T  SG      ++       + VV G  +     +R QK L 
Sbjct: 241 PYLINPNHLIIEGLKTGSTPESGAAFTGIIKDASGHEFITVVNGAASYMDEVQRYQKTLN 300

Query: 283 LITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
           ++ +      L  +Q       +  S  K + + ++K+++   K    K 
Sbjct: 301 IVNA-----VLADKQATTFSKGTVLSQAKHVDLPRMKQSHMPVKIAQTKT 345


>gi|291451721|ref|ZP_06591111.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces albus J1074]
 gi|291354670|gb|EFE81572.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces albus J1074]
          Length = 413

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 98/283 (34%), Gaps = 27/283 (9%)

Query: 30  LMGKILFLSIIMISMASELHAKPKY----SSIVIDVNKNQMTGFKQDE-PRYPASLTKMM 84
           + G  L  +   ++    +   PK     S IV D     +           PAS  KM+
Sbjct: 42  IGGARLGQAGTQVNAGPGVPKLPKKLTGRSWIVADAENGDVLAAHNAHWKLPPASTMKML 101

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
               +   L   + HL   +   + A      S + +KE   +T     L +   S ND 
Sbjct: 102 FADTVLPKLPKDEKHL---VTDEELAGVGAGSSLVGVKEDQTYTVHDLWLGVFLSSGNDA 158

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI--LL 201
                  ++G   +    M+ +A+++   +T   +  G   K Q+++A D  ++    + 
Sbjct: 159 VHVL-SAMNGGIDRTVADMNARAEELQALDTHVVSPDGYDAKGQLSSAYDLTLIARSGMQ 217

Query: 202 RKNFPQYYKYFSIR-------KFRYRNRIITNHNKLL------NKMHNIDGIKTGYTRNS 248
            K+F +Y    S           +  +  I N N+LL       +   I G+K G T N+
Sbjct: 218 EKDFREYCATVSAEFPGEKKKGKKREHFGIQNTNRLLTGAYGMERYEGIAGVKNGNTTNA 277

Query: 249 GFNIVTSLRYKDDPIVAVVMG--MPTSQERDQKALELITSFLE 289
           G             ++  VM      S    Q+   L     +
Sbjct: 278 GATFTGVAERGGRVLLVTVMNPDGKESNAVYQETARLFDWGFQ 320


>gi|229082256|ref|ZP_04214719.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
 gi|228700688|gb|EEL53211.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
          Length = 279

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 128/284 (45%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A    A    +P  +    + ID N  ++   K +DE
Sbjct: 1   MKRTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDANTGEILYGKREDE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      + +I V++ A        K+ L+       ++ 
Sbjct: 61  RSYPASIAKMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 116 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D AI+     K +P   +Y +  +       R+  I N+ +  L       G K+G + 
Sbjct: 176 YDIAIITKEALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSA 234

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T ++      ++     ++
Sbjct: 235 LGKYTVVTVDEKDGKRVINVVL-SSTRKQLYPDTKKMAHYAFQQ 277


>gi|206970320|ref|ZP_03231273.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH1134]
 gi|206734897|gb|EDZ52066.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           AH1134]
          Length = 279

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 128/284 (45%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A    A    +P  +    + ID N  ++   K +DE
Sbjct: 1   MKRTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDANTGEILYGKREDE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      + +I V++ A        K+ L+       ++ 
Sbjct: 61  RSYPASIAKMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 116 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADAIGNKVSP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D AI+     K +P   +Y +  +       R+  I N+ +  L       G K+G + 
Sbjct: 176 YDIAIITKEALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSA 234

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T ++      ++     ++
Sbjct: 235 LGKYTVVTVDEKDGKRVINVVL-SSTRKQLYPDTKKMAHYAFQQ 277


>gi|89899952|ref|YP_522423.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Rhodoferax
           ferrireducens T118]
 gi|89344689|gb|ABD68892.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
           [Rhodoferax ferrireducens T118]
          Length = 282

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 60/273 (21%), Positives = 108/273 (39%), Gaps = 19/273 (6%)

Query: 31  MGKILFLSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYI 88
           M K LF+ + + S AS          +IV++    ++   +      P ASLTK+MT  +
Sbjct: 1   MLKHLFVCLAICSAASASAMSFGSQHAIVVNNESGEILFEENASSVVPIASLTKLMTAMV 60

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           + +     K  +  +I +          + S + L   T     + +   +  S N  + 
Sbjct: 61  VLDS----KPDMEEKISIQLADVDMFKHSASHVPL--GTTLPRREVLQLALMSSDNRAAA 114

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           +      G    F   +  K K +GM NT+ K  +GL      +TA D A +     + +
Sbjct: 115 SLARTYPGGNPAFVKAVHEKIKSLGMINTVIKEPTGLS-PENASTAADLAKMAFAASR-Y 172

Query: 206 PQYYKYFSIRK----FRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
           P      + R      + R+    N N+L+  +  +I   KTG+T  +G  ++  ++   
Sbjct: 173 PVIVNITTDRSDLINMQGRSVEFHNTNRLVGKRGWDILLSKTGFTNEAGHCLIMRIKLAG 232

Query: 261 DPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
                V++    S      AL  I  FL K+T+
Sbjct: 233 KNTTLVLLNAKASSSTFFDALN-IRRFLAKQTI 264


>gi|300119675|ref|ZP_07057217.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           SJ1]
 gi|298722970|gb|EFI63870.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           SJ1]
          Length = 279

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 128/284 (45%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A    A    +P  +    I ID +  ++   K +DE
Sbjct: 1   MKRTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGITIDADTGEILYGKREDE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      + +I V++ A        K+ L+       ++ 
Sbjct: 61  RSYPASIAKMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 116 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D A++     K +P   +Y +  +       R+  I N+ +  L       G K+G + 
Sbjct: 176 YDIAMITKEALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSA 234

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T ++      ++     ++
Sbjct: 235 LGKYTVVTVDEKDGKRVINVVL-SSTRKQLYPDTKKMAHYAFQQ 277


>gi|293400361|ref|ZP_06644507.1| putative D-alanyl-D-alanine carboxypeptidase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291306761|gb|EFE48004.1| putative D-alanyl-D-alanine carboxypeptidase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 416

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/307 (20%), Positives = 125/307 (40%), Gaps = 29/307 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS-------IVIDVNKNQMTGFKQDEPR- 75
           +++    M    FL + M  + ++ + +   ++       IV++ +  ++   K  + R 
Sbjct: 1   MRKLFLSMLLSCFLVMNMNVLHAKENTQDTIAATLKSKDVIVMNRDTKEILFAKNIKKRI 60

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPAS+TK+MT  ++ E  +     +   +P          S   L        +  +  +
Sbjct: 61  YPASMTKIMTAIVVIENTKHFD-KIVEAVPSDTKVIRDEASIAGLLIGERMRIQDALSCM 119

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           +  S +D +     + +G+ K F  LM+NKAK++ +Q+T + N  G +DK   TT +D A
Sbjct: 120 MLASGSDAAKMLARYTTGNTKDFVDLMNNKAKELHLQDTHFTNVYGKYDKQHYTTVKDMA 179

Query: 196 ILGILLRKNFPQYYKY-----FSIRKFRYRNRIITN-------HNKLLNKMHNIDGIKTG 243
           +L     +N P + K        I+   +  RI  N         KL +    I G K+G
Sbjct: 180 LLMDYAMEN-PIFQKIVASDQVKIKTNAFEERIAENFVYATFDKAKLDHSY--ITGAKSG 236

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ---KALELITSFLEKKTLKHQQTHR 300
               +G N+ ++       +V V    P  ++       A  L   +      + +  ++
Sbjct: 237 SMDETGLNLASTAEKDGRRVVIVSAEAPIDEKHTNHVVDAAHLYQWYFTNY--QKKIIYK 294

Query: 301 KDNLSST 307
           K +  + 
Sbjct: 295 KGDTVAI 301


>gi|228988259|ref|ZP_04148355.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229187255|ref|ZP_04314400.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
 gi|228596265|gb|EEK53940.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
 gi|228771469|gb|EEM19939.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 273

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 61/276 (22%), Positives = 123/276 (44%), Gaps = 22/276 (7%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    I ID +  ++   K +DE  YPAS+ 
Sbjct: 3   VMIATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIA 62

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A        K+ L+       ++ +  ++  S
Sbjct: 63  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 117

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        +  D A++  
Sbjct: 118 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAMITK 177

Query: 200 LLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTRNSGFNIVT 254
              K +P   +Y +  +       R+  I N+ +  L       G K+G +    + +VT
Sbjct: 178 EALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVT 236

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                   ++ VV+   T ++      ++     ++
Sbjct: 237 VDEKDGKRVINVVL-SSTRKQLYPDTKKMAHYAFQQ 271


>gi|164686861|ref|ZP_02210889.1| hypothetical protein CLOBAR_00457 [Clostridium bartlettii DSM
           16795]
 gi|164604251|gb|EDQ97716.1| hypothetical protein CLOBAR_00457 [Clostridium bartlettii DSM
           16795]
          Length = 520

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 119/292 (40%), Gaps = 29/292 (9%)

Query: 25  QRNIQLMGKILFL--SIIMISMASELHAKP---KYSSIVIDVNKNQMTGFKQDEPR-YPA 78
           +R I +   ++ L  S I ++ A    AKP    +S  V+D N  ++   +Q+  R YPA
Sbjct: 5   KRIIAIFLSLMMLISSGIFVNNAHAAQAKPTVYAHSYTVMDANSGEIIISEQENKRIYPA 64

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSK---TAATQNPSKLYLKEKTYFTTEQGILAL 135
           S  K++T  +  E        L  +I V K          +   LK    +T E+ +  L
Sbjct: 65  STIKLLTAIVAIE-----NCSLYKRITVKKSTLNKVDVETTTAGLKPGYAYTLEELLNML 119

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH---DKNQITTAR 192
           +  SA D +    E + G+ + F  +M+ +AK++GM ++ + N  G+    + N  +T+ 
Sbjct: 120 LVYSAGDAAEIIAESVGGTRENFVEMMNIRAKELGMNDSYFDNPVGMDWHKNANIYSTSS 179

Query: 193 DQAILGILLRKN-----FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN------IDGIK 241
           D A L      N       +  +Y     ++ +++ +   N  L           I G K
Sbjct: 180 DIAKLTRYAMTNDTIRAIVKKPQYVIKNYYKGKSKTLYASNNFLRNYSYSKNLFTIIGSK 239

Query: 242 TGYTRNSGFNIVTSLRY-KDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           TG +  +G+ +  + R      ++    G  T  +  Q    L+T       
Sbjct: 240 TGTSDKAGYALSATARDSSGREVICAFFGKSTRMQMFQDINTLLTYTFNNYK 291


>gi|255025482|ref|ZP_05297468.1| hypothetical protein LmonocytFSL_02553 [Listeria monocytogenes FSL
           J2-003]
          Length = 202

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/193 (25%), Positives = 89/193 (46%), Gaps = 18/193 (9%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQ 94
           FL     + A+E       ++I I+ +  ++   K  +     AS+TKMM  Y++ E + 
Sbjct: 10  FLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAID 69

Query: 95  SKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             KL  + ++ +S+ A       + S + L+    +T ++   A+   SAN  + A  E 
Sbjct: 70  KGKLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAISEK 129

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-------------QITTARDQAIL 197
           I+GSEK+F   M+ KA ++ +    + NA+GL++++                TAR  A L
Sbjct: 130 IAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTARGMAKL 189

Query: 198 GILLRKNFPQYYK 210
              L  ++P   K
Sbjct: 190 AKHLINDYPDVLK 202


>gi|229017877|ref|ZP_04174760.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273]
 gi|228743468|gb|EEL93585.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273]
          Length = 272

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 103/229 (44%), Gaps = 12/229 (5%)

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           MT YI+ E L   K+ L+  + +         S + +  K   T    + AL+    N  
Sbjct: 1   MTEYIVMEQLHDGKIQLDESVKIRNEVFQTETSPIQVTSKDNTTVRDLLHALLLTGNNRS 60

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGM-QNTIYKNASGLHDKNQ---ITTARDQAILGI 199
           + A  E I+G+E  F  LM+ KAK++ + Q + + N++G++ +     ITTA D A +  
Sbjct: 61  ALALAEHIAGNEDNFTSLMNEKAKQLKLSQQSPFLNSTGINSEKNRQSITTAIDAAEIAA 120

Query: 200 LLRKNFPQYYKYFSIRK--FRYRNRIITNHNKLLN------KMHNIDGIKTGYTRNSGFN 251
            L K++P            F +++  + N NK++       K+ ++DG+++  + N  ++
Sbjct: 121 QLIKDYPDVLNITKQTSYRFTFKDVQVFNTNKMIYSLNKNIKLKDVDGLQSSLSTNGNYS 180

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
            V++    D   ++VV+          +  +L+    E  +    Q  +
Sbjct: 181 FVSTANQGDTRFISVVLDANEENTAFVETKKLLQYGFEPTSYSALQAFK 229


>gi|326777112|ref|ZP_08236377.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces cf. griseus
           XylebKG-1]
 gi|326657445|gb|EGE42291.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces cf. griseus
           XylebKG-1]
          Length = 477

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 56/270 (20%), Positives = 98/270 (36%), Gaps = 26/270 (9%)

Query: 42  ISMASELHAKPKY----SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSK 96
           +++       PK     S IV D     +        R  PAS  KM+    +   LQ  
Sbjct: 59  VNLGPGAPVLPKELTGRSWIVADAENGDVLAAHNAHWRLPPASTLKMLFADTVLPALQP- 117

Query: 97  KLHLNTQIPVSKTA-ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
              L  ++   + +   +  S + +KE   +T     L +  RS ND      E   G  
Sbjct: 118 -TSLTHKVTEGELSGVGEGSSLVGIKEDHTYTVHDLWLGVFLRSGNDAVHVLSEMYGGVP 176

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI--LLRKNFPQYYKYFS 213
           +     M   A+++   +T   +  G     Q+++A D  ++    L +K+F +Y    S
Sbjct: 177 QT-VSAMQKHAEELQALDTRVVSPDGYDAPGQVSSAYDLTLIARSGLQKKDFREYAATAS 235

Query: 214 ------IRKFRYRN-RIITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
                  +K + R    I N N+L+      +    I G+K GYT ++G           
Sbjct: 236 ADFPGEEKKGKKRESFEIQNTNRLITGDIGVDPYQGIAGVKNGYTTHAGNTFTGVAERNG 295

Query: 261 DPIVAVVMG--MPTSQERDQKALELITSFL 288
             ++  VM      S    ++A  L+    
Sbjct: 296 KVLLVTVMNPSAEESHAVYKEAAHLLDWGF 325


>gi|256393602|ref|YP_003115166.1| serine-type D-Ala-D-Ala carboxypeptidase [Catenulispora acidiphila
           DSM 44928]
 gi|256359828|gb|ACU73325.1| Serine-type D-Ala-D-Ala carboxypeptidase [Catenulispora acidiphila
           DSM 44928]
          Length = 419

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 95/260 (36%), Gaps = 24/260 (9%)

Query: 43  SMASELHAKPKY---SSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKL 98
           S A+ + + P     S +V D    Q+   +      YPAS  K++T   +   L   + 
Sbjct: 42  SRAASVGSAPSVDVASYVVADYATGQILAEQSPHRELYPASTLKVLTADTLIPRLDPAR- 100

Query: 99  HLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
                  V+  AA      + S + +     ++      A    SAND        +SG 
Sbjct: 101 ------TVTPKAADFAAEPDGSVVGMTAGVTYSIADLWRATFVESANDAVAELA-HLSGG 153

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
                  M  +A+ +G  +T   +A G     Q+T+A D AI      +  P +  Y  +
Sbjct: 154 LSATVAAMRQEARSLGAHDTTVLDADGYDQDGQLTSAYDLAIFARAGLR-LPAFRAYCDL 212

Query: 215 RKFRYRN-----RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           ++  +         +  H+ ++     + GIK G T  +G   V +       ++  +M 
Sbjct: 213 KQTTFPGPKGTTLTLVGHDPMIKSYPGMIGIKGGLTTKAGHTYVGAATRDGHTVIETLML 272

Query: 270 MPTSQERDQKALELITSFLE 289
             T      +A  L+   L+
Sbjct: 273 GGTDV--FDQAARLMDWGLQ 290


>gi|228955274|ref|ZP_04117282.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228804407|gb|EEM51018.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 279

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 128/284 (45%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A    A    +P  +    + ID +  ++   K +DE
Sbjct: 1   MKRTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDADTGEILYGKREDE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      + +I V++ A        K+ L+       ++ 
Sbjct: 61  RSYPASIAKMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 116 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D AI+     K +P   +Y +  +       R+  I N+ +  L       G K+G + 
Sbjct: 176 YDIAIITKEALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSA 234

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T ++      ++     ++
Sbjct: 235 LGKYTVVTVDEKDGKRVINVVL-SSTRKQLYPDTKKMAHYAFQQ 277


>gi|320528533|ref|ZP_08029690.1| serine-type D-Ala-D-Ala carboxypeptidase [Solobacterium moorei
           F0204]
 gi|320131119|gb|EFW23692.1| serine-type D-Ala-D-Ala carboxypeptidase [Solobacterium moorei
           F0204]
          Length = 398

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/311 (23%), Positives = 124/311 (39%), Gaps = 32/311 (10%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPK----YSSIVIDVNKNQMT-GFKQDEPRYPASLTK 82
           I     I   +++ ++ A       K     + I +D +  Q+    KQDE    ASLTK
Sbjct: 12  ITCTLVIALTTLLPVTAADATFDLGKNLYSTNYIFLDADTGQVLSAKKQDEQISIASLTK 71

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILALITR 138
           MMT+ +  E        LN  + ++         +  S          T      A    
Sbjct: 72  MMTVLLAIENSS----SLNQTVTITDEMIDGLYDEQASVAGYINGDTATLLDLCYAAAVP 127

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           SA D + A    I GS +KF  +M++KA ++GM +T++K+A GL    Q +T  D + L 
Sbjct: 128 SAADAANALAIQIGGSFEKFYQMMNDKAAQLGMDHTVFKSAHGLDRDGQYSTVEDISKLL 187

Query: 199 ILLRKNFPQYYKYFSIRKFRYR-------NRIITNHNKLLNKMHNI--------DGIKTG 243
               +N P + + FS +++  +          + +    +    +          G KTG
Sbjct: 188 RYALQN-PTFKEIFSTKEYTTQATAYYPFGIPLAST---IWAYADTYGYNLTNLSGGKTG 243

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
           YT  +G  I       D  I+AV  G  T+ E+     +  T      + + +   + ++
Sbjct: 244 YTLQAGRCIAYWATVNDMTIIAVTAGASTNVEQYSNLSDAQTVLTSLASWQKKTILKSND 303

Query: 304 LSSTSLKKSLM 314
           + ST   KS M
Sbjct: 304 VVSTIEYKSFM 314


>gi|269929251|ref|YP_003321572.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sphaerobacter
           thermophilus DSM 20745]
 gi|269788608|gb|ACZ40750.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sphaerobacter
           thermophilus DSM 20745]
          Length = 338

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 103/249 (41%), Gaps = 27/249 (10%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++I++      +   +  DEP  PAS  K++T   +  +       L   + V +   
Sbjct: 84  ARAAILVQDEPELVLFERNADEPLPPASTAKIVTALTVLRHA-----GLEEVLTVQEEDL 138

Query: 112 --TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-------GSEKKFAILM 162
                 S + L+     T    ++ L+  S ND +      I           ++FA  M
Sbjct: 139 VDPVAESHMGLQAGDTVTVHDLLVGLLLPSGNDAAKTLSRVIGERLPGDQPPVERFAAAM 198

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF----- 217
           +  A ++GM  + + + SG   + Q+ TARD  I    L +  P      ++++      
Sbjct: 199 NAVAAELGMTGSHFVDPSGDDAEGQVVTARDMVIAARALLRE-PVLVSIVAMQRAEVRIG 257

Query: 218 --RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
             + R   + N N+LL +   + GIKTG T  +G  ++ + R      +AV++G   SQ+
Sbjct: 258 GPKARVIRLENTNQLLAQ-DGVFGIKTGTTDQAGQCLLVAYRAPSGTQIAVILG---SQD 313

Query: 276 RDQKALELI 284
           R   A  L+
Sbjct: 314 RYGDARALL 322


>gi|326201438|ref|ZP_08191309.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           papyrosolvens DSM 2782]
 gi|325988038|gb|EGD48863.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           papyrosolvens DSM 2782]
          Length = 298

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 61/280 (21%), Positives = 115/280 (41%), Gaps = 30/280 (10%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKYS----------SIVIDVNKNQMTGFKQD-E 73
           +++   +  +L +  ++     ++   P  S          +I+I +  +     K    
Sbjct: 8   KKSGMCILVVLMMMAVIAVFVYKIEPNPTVSIALDKLNSPNAILIRLKDHTTLLDKNSGV 67

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTE 129
             YPASLTK+MT  +  E +      L  +I ++ +        + S    +        
Sbjct: 68  KIYPASLTKIMTAIVALENIHD----LKEEIKLTNSTFRGLYEADASMAGFQPGEQVRAL 123

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
             +  ++  S  +        ++GS++ F  +M+ KA K+GM+NT ++N +GL ++N  T
Sbjct: 124 DLLYGVLLPSGAECCVGLANKVAGSQQNFVKMMNEKAAKLGMKNTHFENVTGLQNENHYT 183

Query: 190 TARDQAILGILLRKN--FPQYYK--YFSIRKFRYRNRIITNHNKLLNKMHN-------ID 238
           T  D AIL     KN  F + +    +S +        IT ++ +  K++N       I 
Sbjct: 184 TVADLAILLSYSLKNDTFREIFTSARYSTKPTNKHTDGITFNSTMFEKLNNKKITGGEIL 243

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           G KTGYT  +G  + +  +      V V  G       +Q
Sbjct: 244 GGKTGYTSAAGLCLASLSKVGTQEYVFVTAGAKGDSHSEQ 283


>gi|318080587|ref|ZP_07987919.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SA3_actF]
          Length = 409

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 67/279 (24%), Positives = 128/279 (45%), Gaps = 20/279 (7%)

Query: 46  SELHAKPKYSSIVIDVNK-NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKK------L 98
           +     PK     +DV+           +P   AS+ K+MT Y++      KK      +
Sbjct: 50  AAAMPWPKSGQAAMDVDGLGSFGSSGAQKPVPIASVAKVMTAYLVLRDHPVKKGGDGASI 109

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            ++ +       + QN S + ++     + ++ I A++  SAN+++     + +GSEK F
Sbjct: 110 TMDQKAEDDAGLSAQNESTVDVRAGQKLSQKEAIEAIMLASANNIARQLARWDAGSEKDF 169

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF- 217
              M+  A ++GM+NT Y + SGL +K  ++TA DQ  LG +  K+ P + +   +  + 
Sbjct: 170 VAKMNKAADELGMKNTTYTDPSGL-NKTTVSTAEDQVKLGKVAMKD-PLFREVVRMPAYV 227

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK----DDPIVAVVMGMPTS 273
               +  TN N+L+  M+N  GIKTG T  +G N++ +   +       IV  V+  P +
Sbjct: 228 DSNGKTQTNWNRLV-PMNNTVGIKTGTTTAAGGNLLYAATKEVGGTTRTIVGAVLAQPPA 286

Query: 274 QERDQKALELITSF-----LEKKTLKHQQTHRKDNLSST 307
            E +      + +        + TL  ++  +K ++  +
Sbjct: 287 PEDNSILTGALNAGKALIEAAQGTLVAEKVVKKGDVVGS 325


>gi|118381024|ref|XP_001023674.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
            thermophila]
 gi|89305441|gb|EAS03429.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
            thermophila SB210]
          Length = 1098

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 63/314 (20%), Positives = 118/314 (37%), Gaps = 63/314 (20%)

Query: 51   KPKYS---SIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHL-NTQIP 105
             P+ S     V + + N+    K        ASLTK+MT Y+  ++L+  +L + N  I 
Sbjct: 774  PPEVSSKCWSVFNSDTNEFIFGKSHNFQVEIASLTKIMTCYVTIKFLEENQLDIKNVFIE 833

Query: 106  VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF------------------ 147
            VSK A     +   L++  + +T + +  L+  S ND +                     
Sbjct: 834  VSKAATKTIGTTANLEKGDFVSTYELLYGLMLPSGNDAAVVLSEGVGYLLYCQQSKLSFT 893

Query: 148  -----------------------GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
                                      ++     F   M+ +A+K+G++ T Y    GL +
Sbjct: 894  NDNTSSGVPGDQKIYVNYKCKSEAGGLNQCMNIFIKEMNKQAQKVGLERTNYACVHGLSN 953

Query: 185  KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-----------RNRIITNHNKLLNK 233
            K   +TA+D  +L  ++ K  P   K  + +++                   N N++L K
Sbjct: 954  KYNTSTAKDVGLLSCIVMK-HPLIQKVVNTKEYETVDVLDQEKSNQDQYEWENTNQMLEK 1012

Query: 234  MHNIDGIKTGYTRNSGFNIVTSL--RYKDDP--IVAVVMGMPTSQERDQKALELITSFLE 289
                DG+KTG T  +G  + +S   +       ++ V++   +   R  +  +LI   L+
Sbjct: 1013 -KGYDGVKTGVTETAGPCLSSSYKCKRNGKQVGLICVLLNCKSMDHRWPETKQLIKWALK 1071

Query: 290  KKTLKHQQTHRKDN 303
                K ++    D 
Sbjct: 1072 SYFPKEKKQSEADG 1085


>gi|225866993|ref|YP_002752371.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           03BB102]
 gi|225787746|gb|ACO27963.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 03BB102]
          Length = 279

 Score =  156 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 127/284 (44%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A    A    +P  +    I ID +  ++   K +DE
Sbjct: 1   MKRTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E      +  + +I V++ A        K+ L+       ++ 
Sbjct: 61  RSYPASIAKMMTTLLLLE-----NVTEDEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 116 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D A++     K +P   +Y +  +       R+  I N+ +  L       G K+G + 
Sbjct: 176 YDIAMITKEALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSA 234

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T ++      ++     ++
Sbjct: 235 LGKYTVVTVDEKDGKRVINVVL-SSTRKQLYPDTKKMAHYAFQQ 277


>gi|196047530|ref|ZP_03114740.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           03BB108]
 gi|196021644|gb|EDX60341.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           03BB108]
          Length = 279

 Score =  156 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 61/276 (22%), Positives = 123/276 (44%), Gaps = 22/276 (7%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    I ID +  ++   K +DE  YPAS+ 
Sbjct: 9   VMIATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIA 68

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A        K+ L+       ++ +  ++  S
Sbjct: 69  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 123

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        +  D A++  
Sbjct: 124 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAMITK 183

Query: 200 LLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTRNSGFNIVT 254
              K +P   +Y +  +       R+  I N+ +  L       G K+G +    + +VT
Sbjct: 184 EALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVT 242

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                   ++ VV+   T ++      ++     ++
Sbjct: 243 VDEKDGKRVINVVL-SSTRKQLYPDTKKMAHYAFQQ 277


>gi|228961252|ref|ZP_04122872.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798458|gb|EEM45451.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 279

 Score =  156 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 128/284 (45%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A    A    +P  +    + ID +  ++   K +DE
Sbjct: 1   MKRTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDADTGEVLYGKREDE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      + +I V++ A        K+ L+       ++ 
Sbjct: 61  RSYPASIAKMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 116 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNTRAKELGTKHATFKNASGADALGNKVSP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D AI+     K +P   +Y +  +       R+  I N+ +  L       G K+G + 
Sbjct: 176 YDIAIITKEALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSA 234

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T ++      ++     ++
Sbjct: 235 LGKYTVVTVDEKDGKRVINVVL-SSTRKQLYPDTKKMAHYAFQQ 277


>gi|120556509|ref|YP_960860.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Marinobacter
           aquaeolei VT8]
 gi|120326358|gb|ABM20673.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Marinobacter aquaeolei VT8]
          Length = 308

 Score =  156 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 56/285 (19%), Positives = 110/285 (38%), Gaps = 24/285 (8%)

Query: 37  LSIIMISMASELHAKPKYS--SIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYL 93
           L++   S+AS   A    S  +   +V K  +   K  D P   AS+TK+MT  ++ E  
Sbjct: 14  LAVSGQSLASPERAPNLASVQAAAAEVGKEGLLFGKHADRPVPVASITKLMTALVVVESG 73

Query: 94  QSKKLHLNTQIPVSK---TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
           Q     ++  +   +    AA    S+  ++  +       +   +  S N  +      
Sbjct: 74  QD----MDEWLTFEERHVEAAANAWSR--IRVGSQLRRRDVLRIALMSSENFAAYTLARV 127

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
             G    F   M+ KAK +GM  T + + +GL   + ++TA D  IL     K  P+  +
Sbjct: 128 YPGGFDGFVAAMNAKAKALGMLQTRFVDPTGLST-DNVSTAADLVILARAALK-HPEIRE 185

Query: 211 YFSI----RKFRYRNRIIT--NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
             +      +FR     ++  N N L+++    +   KTGY   +G  +V        P+
Sbjct: 186 ASTTGYYRAEFRKPRYSLSFGNTNALVHRDSWGVSLSKTGYLTEAGRCLVMVSEMNGTPV 245

Query: 264 VAVV---MGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLS 305
           + V+   +G  +      +    + +          + + ++  +
Sbjct: 246 ITVLLDSLGTRSPMGDAGRIKRWLATGQPGSVASAAKRYAQEKNA 290


>gi|297192554|ref|ZP_06909952.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|297151396|gb|EDY62003.2| D-alanyl-D-alanine carboxypeptidase [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 461

 Score =  156 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 55/280 (19%), Positives = 102/280 (36%), Gaps = 27/280 (9%)

Query: 32  GKILFLSIIMISMASELHAKPK----YSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTL 86
           G +L      + +       PK     S IV D    ++        R  PAS  KM+  
Sbjct: 98  GSLLAKPGTQVRLGPGAPVLPKDVSGRSWIVADAESGEVLASHNAHWRLPPASTMKMLFA 157

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
             +   L    +H   ++  ++ A      S + +KE   +T     L +  RS ND   
Sbjct: 158 DTLLPRLPKTTVH---KVAPAELADVGAGSSLVGIKENHTYTVHDMWLGVFLRSGNDAVH 214

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI--LLRK 203
                ++G   +    M   A+++   +T   +  G     Q+++A D  ++    + +K
Sbjct: 215 VL-SAMNGGISRTVADMQAHAEELQALDTKVVSPDGYDAPGQVSSAYDLTLIARSGMQKK 273

Query: 204 NFPQYYKYFS------IRKFRYRN-RIITNHNKLLNK------MHNIDGIKTGYTRNSGF 250
           +F +Y    S       +K + R    I N N+LL           I G+K G T ++G 
Sbjct: 274 DFREYCSTVSADFPGEQKKGKKRGTFKIQNTNRLLTGASGISPYKGIAGVKNGSTTHAGS 333

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERD--QKALELITSFL 288
                       ++  VM   + + +   ++A  L+    
Sbjct: 334 TFTGVAERNGKVLLVTVMNPDSGESQAVYKEAGRLLDWGF 373


>gi|260219749|emb|CBA26593.1| hypothetical protein Csp_H39370 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 364

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 1/131 (0%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQS 95
           +S  + + A         + +++DV  NQ+   K  D P  PASLTK+MT Y++F+ L+S
Sbjct: 1   MSFAVAAQAPRPPEVAARAYLLLDVTSNQILASKDMDMPVEPASLTKLMTAYLVFDALRS 60

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
           KK+ L    PVS+ A     S++++  K     E  I  +I +S ND + A  E + GS 
Sbjct: 61  KKIDLKQTFPVSERAWKMPGSRMFIDPKMQVPVEDLIKGMIVQSGNDATMALAEGVGGSL 120

Query: 156 KKFAILMSNKA 166
           ++F  +M+++A
Sbjct: 121 ERFVQMMNDQA 131


>gi|228942179|ref|ZP_04104719.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228975108|ref|ZP_04135667.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981748|ref|ZP_04142043.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
 gi|228777860|gb|EEM26132.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
 gi|228784629|gb|EEM32649.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817513|gb|EEM63598.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 301

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 126/284 (44%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A    A    +P  +    + ID    ++   K +DE
Sbjct: 23  MKRTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDAKTGEILYGKREDE 82

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      + +I V++ A        K+ L+       ++ 
Sbjct: 83  RSYPASIAKMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 137

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 138 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADAIGNKVSP 197

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D AI+     K +P   +Y +  +       R+  I N+ +  L       G K+G + 
Sbjct: 198 YDIAIITKEALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSA 256

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T  +      ++     ++
Sbjct: 257 LGKYTVVTVDEKDGKRVINVVL-SSTRAQLYPDTKKMAHYAFQQ 299


>gi|294631036|ref|ZP_06709596.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14]
 gi|292834369|gb|EFF92718.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14]
          Length = 483

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 58/292 (19%), Positives = 107/292 (36%), Gaps = 33/292 (11%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPK----YSSIVIDVNKNQMTGFKQDEPR-YPAS 79
            R   + G  L  +   +++A+ +   PK     S IV D    Q+        R  PAS
Sbjct: 101 ARMSTVGGARLGQAGTQVNLAAGVPVLPKDLTARSWIVADAESGQVLAAHNAHWRLPPAS 160

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLYLKEKTYFTTEQGILALITR 138
             KM+    +     + + H   ++  S  A   +N S + +KE   ++     L +  R
Sbjct: 161 TLKMLFADTVLPKFPATQQH---KVVASDLAGIGENSSMVGIKENESYSVRDLWLGVFLR 217

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND        ++G   +    M+  A+ +   +T   +  G    NQ+++A D  +  
Sbjct: 218 SGNDAVHVL-SAMNGGVAQTVADMNAHAQDLQALDTQVVSPDGYDAPNQVSSAYDLTLFA 276

Query: 199 I--LLRKNFPQYYKYF------SIRKFRYRNRI-----ITNHNKLLNK------MHNIDG 239
              L +K+F  Y            +K +          I N ++LL+          I G
Sbjct: 277 RSGLQKKDFRTYCSTVRAQFPGETKKDKKGKSTRTSFEIQNTDRLLSGDYDISVYPGIAG 336

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ---KALELITSFL 288
           +K G T N+G             ++  VM  P  ++ ++   +  +L     
Sbjct: 337 VKNGNTTNAGATFTGVAERGGRVLLVTVMN-PEKKDHNEVYRETAKLFDWGF 387


>gi|218234016|ref|YP_002369811.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
           B4264]
 gi|229049698|ref|ZP_04194255.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
 gi|229153200|ref|ZP_04281379.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
 gi|296505443|ref|YP_003667143.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
 gi|218161973|gb|ACK61965.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus B4264]
 gi|228630299|gb|EEK86949.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
 gi|228722611|gb|EEL73999.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
 gi|296326495|gb|ADH09423.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
          Length = 279

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 127/284 (44%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A    A    +P  +    + ID +  ++   K +DE
Sbjct: 1   MKRTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDADTGEVLYGKREDE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      + +I V++ A        K+ L+       ++ 
Sbjct: 61  RSYPASIAKMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 116 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D AI+     K +P   +Y +  +       R+  I N+ +  L       G K+G + 
Sbjct: 176 YDIAIITKEALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSA 234

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T  +      ++     ++
Sbjct: 235 LGKYTVVTVDEKDGKRVINVVL-SSTRAQLYPDTKKMAHYAFQQ 277


>gi|294852417|ref|ZP_06793090.1| predicted protein [Brucella sp. NVSL 07-0026]
 gi|294821006|gb|EFG38005.1| predicted protein [Brucella sp. NVSL 07-0026]
          Length = 258

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 6/164 (3%)

Query: 56  SIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +++ID     +   K  D+P  PASL K+MT  ++FE L+  +  L T  PVS+ A    
Sbjct: 42  ALLIDDRSGTVLLSKGADKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEYAWRTG 101

Query: 115 P-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                 S ++ + K+  T    +  +I +SAND +    E ++GSE+ FA  M+ +AK++
Sbjct: 102 GAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQRAKEL 161

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
           G+ ++ + N++GL    Q+ T  D      +  +  P      S
Sbjct: 162 GLSSSKFVNSTGLPAAGQVVTLEDLLNSLAISMRRIPNIIDIMS 205


>gi|255527697|ref|ZP_05394554.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           carboxidivorans P7]
 gi|296185032|ref|ZP_06853442.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           carboxidivorans P7]
 gi|255508610|gb|EET84993.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           carboxidivorans P7]
 gi|296049866|gb|EFG89290.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
           carboxidivorans P7]
          Length = 376

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 63/272 (23%), Positives = 109/272 (40%), Gaps = 21/272 (7%)

Query: 61  VNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL- 118
           +   ++   K  D+  YPAS        ++   L ++  + N  +  ++ A  Q PS L 
Sbjct: 1   MKTGEIIYAKDIDKQMYPAST-----TKLLTALLLAENKNKNDALKYTEKAKIQPPSALN 55

Query: 119 ----YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
                +      T +  +  L+  S ND++    E +   +  FA  M+ K K++ ++NT
Sbjct: 56  ADLHPINVGETMTAQDVMDGLLLYSGNDMAYVIAESVGKDDVDFANKMNEKVKQLNLKNT 115

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF-----SIRKFRYRNRIITNHNK 229
            +   +GLHD N  TTA D + +     +N P   +       +I+     + +I N NK
Sbjct: 116 HFVTPNGLHDPNHYTTAYDLSNIASTAFQN-PWVRETMGKQKNTIKTSSGTSFVIENRNK 174

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM---PTSQERDQKALELITS 286
           LL K +   G KTGYT  +G  +VT        I+ VVM      T         ++I  
Sbjct: 175 LLGK-NGCIGGKTGYTSEAGKCLVTVYERDGRKILGVVMKSVYDATDMAVFNDMEKIINW 233

Query: 287 FLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKL 318
               K +   +        S   K  ++  + 
Sbjct: 234 SYAAKPVTLYKAGDVVTTKSIKYKPLIIGPEK 265


>gi|238028296|ref|YP_002912527.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           glumae BGR1]
 gi|237877490|gb|ACR29823.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           glumae BGR1]
          Length = 376

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 93/236 (39%), Gaps = 13/236 (5%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-NP 115
           VID     +   +      P AS++K+MT  +  +        L  ++ VS     +   
Sbjct: 141 VIDERSGTVLLERHANRIKPIASVSKLMTAVVSLDRHVPLTHRL--RVSVSDRDTIKFTG 198

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S+  LK  +  +    +   +  S N  + A      G    F   M+ KA+ +GM NT 
Sbjct: 199 SR--LKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFIAAMNRKARMLGMTNTR 256

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-IRKFRYRNRII---TNHNKLL 231
           + NA+GL     ++TARD A L     + +P    + +   +  +  R      N N L+
Sbjct: 257 FVNATGLS-PQNVSTARDLARLLSAAAR-YPAIRTFSTDHAQVVHPGRGQLSYVNSNALV 314

Query: 232 NKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
                 I   KTG+   +G  +V   R    P+  V++  P  ++    A+ +   
Sbjct: 315 RGGDTRIRLQKTGFINEAGHCLVIRYRIGARPVDVVLLDAPGPRDHVADAIRIRNW 370


>gi|329941308|ref|ZP_08290587.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoaurantiacus
           M045]
 gi|329299839|gb|EGG43738.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoaurantiacus
           M045]
          Length = 851

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 72/264 (27%), Positives = 122/264 (46%), Gaps = 23/264 (8%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKLYLKEKTYFTT 128
           +P   AS+TK+MT Y+I +     K     +I V + A  Q      S + +      T 
Sbjct: 525 KPAPIASVTKVMTAYLILKN-HPLKGGEGEKIKVDQPAEDQATADGESTVKVHAGDSITE 583

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           ++ + AL+  SAN+V+     + +GSEK F   M+  AK++GM NT Y + SGL +K  +
Sbjct: 584 KEALQALLIASANNVARLVARWDAGSEKAFVAKMNTTAKQLGMTNTTYTDPSGL-EKTTV 642

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFR-YRNRIITNHNKLLNKMHNIDGIKTGYTRN 247
           +TA DQ  L     K+   + +  ++ ++  Y+    +N N+L+   + + GIKTG T  
Sbjct: 643 STAVDQVKLAKAAMKDS-SFRQIAAMMEYTDYKGDKHSNWNRLVG-YNGVVGIKTGTTTA 700

Query: 248 SGFNIVTSLRYK----DDPIVAVVMGMPTSQERDQ-------KALELITSF---LEKKTL 293
           +G N+V +   K       IV  V+G     E +         + +LI +    LE  T+
Sbjct: 701 AGGNLVFAAVKKVGGQTRTIVGAVVGQGPGGEDNTILSGALDASDKLIRAAQASLESATI 760

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKK 317
             + T           +  ++I K
Sbjct: 761 LKKGTVVGAVDDGLGGRTPVVITK 784


>gi|328884566|emb|CCA57805.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           venezuelae ATCC 10712]
          Length = 426

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 52/285 (18%), Positives = 100/285 (35%), Gaps = 30/285 (10%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKY----SSIVIDVNKNQMTGFKQDE-PRYPASLTKM 83
            L G +L      + +       PK     S IV D    ++        P  PAS  KM
Sbjct: 45  SLGGPLLGNPGTQVKLGPGAPVLPKELSGRSWIVADAESGEILAAHNAHWPLAPASTLKM 104

Query: 84  MTLYIIF-EYLQSKKLHLNTQIPVSKTAATQNPSK-LYLKEKTYFTTEQGILALITRSAN 141
           +    +  ++  + + HL   +  +  A     S  + +KEK  +T     L +  RS N
Sbjct: 105 LFADTLLPKFPDATQKHL---VTTTDLAGIGEGSSLVGIKEKQTYTVHDLWLGVFLRSGN 161

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           D         +G  +     M++ A ++   +T   +  G     Q+++A D  ++    
Sbjct: 162 DAVHVLTSMNNGLRQT-VKDMNDHAAELQALDTHVVSPDGYDAPGQVSSAYDLTLIARNG 220

Query: 202 RKNFPQYYKYFSIRKFRYRN----------RIITNHNKLLNK------MHNIDGIKTGYT 245
            +    + +Y +  +  +              I N N+LL           I G+K G T
Sbjct: 221 MQK-KDFREYAATPRAAFPGEQKPGKKRETFEIQNTNRLLTGDLGVAPYQGIAGVKNGNT 279

Query: 246 RNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD--QKALELITSFL 288
            ++G             ++  VM   + ++    ++A  L+    
Sbjct: 280 THAGATFTGVAERNGRVLLVTVMNPSSKEQHAVYREAARLLDWGF 324


>gi|221635723|ref|YP_002523599.1| D,D carboxypeptidase [Thermomicrobium roseum DSM 5159]
 gi|221158037|gb|ACM07155.1| D,D carboxypeptidase [Thermomicrobium roseum DSM 5159]
          Length = 323

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 98/254 (38%), Gaps = 30/254 (11%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S +V+D+  +++   +    P  PAS  K++T     E      L     + V     
Sbjct: 69  ARSVLVVDLTTDRILLERASRTPLPPASTLKLLTALTAVEI-----LSFEEIVTVQPEDT 123

Query: 112 TQN--PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS---------GSEKKFAI 160
                 S + L      T    +L L+  S ND + A                  ++F +
Sbjct: 124 VDPARESAMGLDVGDTITVHDLLLGLLLPSGNDAARALARSAGERLAGPPDRPPRERFLV 183

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
            M  KA+++G+  T+     G     Q T+ARD   L      + P+     ++R  + R
Sbjct: 184 AMQEKARELGLSETVVLTPDGDDVPGQTTSARDLLQLARATL-DHPELAALVALRTAQVR 242

Query: 221 NRI-------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVMGMPT 272
                     + N N+LL + H + GIKTG T  +G  +V + R       VA+V+G   
Sbjct: 243 VGGPKARVLELRNTNELLGQ-HGVIGIKTGTTPEAGQCLVAAWRTSDGRTFVAIVLG--- 298

Query: 273 SQERDQKALELITS 286
           SQ+R      +I  
Sbjct: 299 SQDRYGDMRAIIDW 312


>gi|282860935|ref|ZP_06270001.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           sp. ACTE]
 gi|282564671|gb|EFB70207.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           sp. ACTE]
          Length = 412

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 54/270 (20%), Positives = 94/270 (34%), Gaps = 27/270 (10%)

Query: 42  ISMASELHAKPK----YSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSK 96
           + +       PK     S IV D     +        R  PAS  KM+    +   LQ  
Sbjct: 51  VDLGPGAPVLPKDLTGRSWIVADAESGDVLAAHNSHWRLPPASTLKMLFADTVLPALQPT 110

Query: 97  KLHLNTQIPVSKTA-ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
             +L   +     A   +  S + +KE   +T     L +  +S ND          G  
Sbjct: 111 TSYL---VKEQDLAGVGEGSSLVGVKEDHSYTVHDLWLGVFLQSGNDAVHVLASMYGG-V 166

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI--LLRKNFPQYYKYFS 213
                 M   A ++   +T   +  G   +NQ+++A D  +     L + +F +Y    S
Sbjct: 167 DATVAAMQRHAYELQALDTRVVSPDGYDAQNQVSSAYDLTLFARSGLQKADFREYAATAS 226

Query: 214 -------IRKFRYRNRIITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
                   +  + ++  I N N+LL       +   I G+K GYT ++G           
Sbjct: 227 AQFPGEQEKGKKRQSFGIQNTNRLLTGADGVEQYQGIAGVKNGYTTHAGNTFTGVAERNG 286

Query: 261 DPIVAVVMGMPT--SQERDQKALELITSFL 288
             ++  VM   +  S    ++A  L+    
Sbjct: 287 RVLLVTVMHPDSEVSHAVYKEAASLLDWGF 316


>gi|295396423|ref|ZP_06806585.1| serine-type D-Ala-D-Ala carboxypeptidase [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294970725|gb|EFG46638.1| serine-type D-Ala-D-Ala carboxypeptidase [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 403

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 65/278 (23%), Positives = 118/278 (42%), Gaps = 23/278 (8%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
            +        + +V +++  ++     +D    PAS+ K++T   + + L   K      
Sbjct: 38  GTSPPKPAADAWLVANLDTGEVLVSHGEDVVSSPASVQKLLTALALVDELPDVKKKH--- 94

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
             +S+     + +++ L     ++ +    +++  SAND + A GE + G  K    LM 
Sbjct: 95  -RISEADTQVDGTRVGLLRDNEYSIDLLFRSMLMSSANDSAYALGEAVGGQHKA-LELMH 152

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN-------------FPQYYK 210
            KA+++GM +T+    SGL    Q TT  D   L     KN             FP    
Sbjct: 153 RKARQLGMDSTVVGTTSGLDAPGQGTTIDDLLRLAHEFTKNKYLMKVVQTQTLDFP--GG 210

Query: 211 YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           Y   +K + +   I NH +L+  +    G+K GYT+ +  + + +    D    AVV+  
Sbjct: 211 YDHDKKKKVKGYQIQNHTRLIGLVEGAIGLKNGYTQEARGSFLGAATRGDTTYAAVVLRA 270

Query: 271 PTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
            T Q R Q A +L+     +   K  +T   ++LS+ S
Sbjct: 271 QT-QSR-QAAADLLNWAFNQTDPKVTRTVAFEDLSTPS 306


>gi|229026472|ref|ZP_04182829.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272]
 gi|228734935|gb|EEL85573.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272]
          Length = 279

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 126/284 (44%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A    A    +P  +    I ID +  ++   K +DE
Sbjct: 1   MKRTIVMIVMIATLFTGMIFFSYAHRQQAVRADQPSITGQYGITIDADTGEILYGKREDE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      + +I V++ A        K+ L+       ++ 
Sbjct: 61  RSYPASIAKMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 116 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSP 175

Query: 192 RDQAILGILLRKNFPQYYKYF----SIRKFRYRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D AI+     K +P   +Y     +      R+  I N+ +  L       G K+G + 
Sbjct: 176 YDIAIITKEALK-YPIVLEYMNSIHTTLHTSERSPKIANYGREELYDDPYAIGSKSGLSA 234

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T  +      ++     ++
Sbjct: 235 LGKYTVVTVDEKDGKRVINVVL-SSTRTQLYPDTKKMAHYAFKQ 277


>gi|291524841|emb|CBK90428.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale DSM 17629]
          Length = 301

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 67/262 (25%), Positives = 110/262 (41%), Gaps = 31/262 (11%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           AK    +   +++ +Q+   +   E  YPAS TK++T YII +        LN  + VS 
Sbjct: 49  AKTAEGAGAFNIDTHQVLYSQNLFEKLYPASTTKILTAYIILKNCD-----LNATVTVSH 103

Query: 109 TAATQN--PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
            AA      S   LKE    T +  +  L+  S ND + A  E+ SGS ++FA LM++ A
Sbjct: 104 DAANPGHSSSVCGLKEGDVITVQDLLYGLLLESGNDAAIALAEYCSGSVEEFAKLMNSTA 163

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
           K  G  N+ + N SGL D+N  TT  D  ++             + +I   +  +   TN
Sbjct: 164 KSFGATNSNFVNPSGLPDENHYTTIYDMYLIFSNAI----SLESFVAIISSQTHDVAYTN 219

Query: 227 --HNKLLNKMHNIDGIKTG-YTRNSG---------------FNIV-TSLRYKDDPIVAVV 267
              + +     N  G  TG YT                   + +V  S   K++ I+++V
Sbjct: 220 AQGSAVSKTFKNTCGYLTGAYTAPENVTVTGGKTGTTGEAGYCLVLLSQNAKNERIISIV 279

Query: 268 MGMPTSQERDQKALELITSFLE 289
                 ++      E+++ F  
Sbjct: 280 YKADGKKDLYSFMNEILSGFAN 301


>gi|238925374|ref|YP_002938891.1| putative D-alanyl-D-alanine carboxypeptidase precursor [Eubacterium
           rectale ATCC 33656]
 gi|238877050|gb|ACR76757.1| predicted D-alanyl-D-alanine carboxypeptidase precursor
           [Eubacterium rectale ATCC 33656]
          Length = 367

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 95/256 (37%), Gaps = 39/256 (15%)

Query: 56  SIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKL---------------- 98
           ++VID     +   K   E  YPAS+TK+MT+ +  E  +   +                
Sbjct: 99  AVVIDEQDGTVVAGKNAHEKMYPASMTKVMTVLVAAEQAEKNAIAAAENENTEIDRQAVI 158

Query: 99  --HLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
              LN  + +++ A       + S     +             I  S  + +     + +
Sbjct: 159 ENKLNEVVTITREATDYSYVHDCSTTGFLDGEQVPLRDVFNGTILPSGGESAYQLAVYTA 218

Query: 153 GSEKKFAILMSNKAKKIGM-QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK- 210
           GS + F  +M+ KA ++G+ Q T + N  G++D+N  +TA D A++     ++     K 
Sbjct: 219 GSMEAFVDMMNQKAAELGIGQTTHFANPVGIYDENNYSTAYDMAVIMQAAMQD--DICKT 276

Query: 211 -----YFSIRKFRYRNRIITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLR-Y 258
                 +S          +   N  L ++ +      + G KTG+   SG   V+  +  
Sbjct: 277 VLSNHTYSTAATPQHPENLNISNLFLRRIEDRMTSGEVIGAKTGFVNQSGNCAVSYEKAA 336

Query: 259 KDDPIVAVVMGMPTSQ 274
                + V  G  +  
Sbjct: 337 SGKTYICVTAGASSGW 352


>gi|229112452|ref|ZP_04241990.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
 gi|229130265|ref|ZP_04259224.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
 gi|229147556|ref|ZP_04275903.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
 gi|228635982|gb|EEK92465.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
 gi|228653198|gb|EEL09077.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
 gi|228671100|gb|EEL26406.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
          Length = 279

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 127/284 (44%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A    A    +P  +    + ID +  ++   K +DE
Sbjct: 1   MKRTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDADTGEVLYGKREDE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      + +I V++ A        K+ L+       ++ 
Sbjct: 61  RSYPASIAKMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 116 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNTRAKELGTKHATFKNASGADALGNKVSP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D AI+     K +P   +Y +  +       R+  I N+ +  L       G K+G + 
Sbjct: 176 YDIAIITKEALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSA 234

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T  +      ++     ++
Sbjct: 235 LGKYTVVTVDEKDGKRVINVVL-SSTRAQLYPDTKKMAHYAFQQ 277


>gi|269128157|ref|YP_003301527.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Thermomonospora curvata DSM 43183]
 gi|268313115|gb|ACY99489.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Thermomonospora curvata DSM 43183]
          Length = 1003

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 68/254 (26%), Positives = 112/254 (44%), Gaps = 20/254 (7%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           ++ +   P+    V+DV      G  QD+   P AS+ K+MT Y+  +    +       
Sbjct: 647 SAPVLPLPRSGQAVLDVEGIGTMGATQDQRPIPTASVAKVMTAYVFLKNHPLEPGEDGPT 706

Query: 104 IPVS-KTAA------TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
             +S + AA       +  S + ++    FT  + + AL+  SAN+++     + SGS  
Sbjct: 707 FTISAEEAARLPFRKKRGESHVDVRAGQRFTERKALEALMVVSANNIAHELARWDSGSIS 766

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F   M+  AK++GM NT Y + SG  D   ++TA DQ  L     +  P + +  + R 
Sbjct: 767 AFVAKMNATAKELGMHNTRYTDPSGY-DSGTVSTAADQVKLLRAAMR-IPAFAEIVAERV 824

Query: 217 FRYRNR--IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK----DDPIVAVVMGM 270
           +   +   +    N LL     I G KTGYT  +G N V + R +    D  ++  VMG 
Sbjct: 825 YDPEDGGPVRPAGNVLLGNY-GIVGGKTGYTDAAGGNFVFAARRQVAGVDTLMIGAVMG- 882

Query: 271 PTSQERDQKALELI 284
                R   AL+ +
Sbjct: 883 --QHGRAGSALDAM 894


>gi|294629041|ref|ZP_06707601.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14]
 gi|292832374|gb|EFF90723.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14]
          Length = 425

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 93/266 (34%), Gaps = 23/266 (8%)

Query: 43  SMASELHAKPK----YSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKK 97
           + A    A P      + ++ D    ++   ++  E   PAS  KM+    +        
Sbjct: 36  AQARGTSALPARLTAQAWLLADWESGEVLAAYRAHERLAPASTLKMLFADTVLAKFPRTD 95

Query: 98  LHLNTQIPVSKTA-ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
            H    +  +  A   +  S + ++  T +T EQ    +  RS ND        ++G   
Sbjct: 96  RH---TVTAADLADIPEGSSLVGIQPGTTYTVEQLWQGVFLRSGNDAVHVLA-AMNGGIA 151

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
           K    M  +A  +   +T   +  G     Q+++A D  +      KN   +  Y   R 
Sbjct: 152 KTVAEMQARAADLQALDTHVVSPDGYDHPGQVSSAYDLTLFARHGLKN-ADFRGYCGTRA 210

Query: 217 FRY-----RNRIITNHNKL------LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
             +     +   I N ++L      L     + G+K GYT ++G     +       ++ 
Sbjct: 211 ADFPAGGKKTFQIQNTDRLLTGSWGLKTYDGMIGVKNGYTSHAGNTFTGAAVRGGRTLLV 270

Query: 266 VVMG-MPTSQERDQKALELITSFLEK 290
            VM     +    +++  L+     +
Sbjct: 271 TVMHPAAGANAVYEESAALLDWGFAQ 296


>gi|38233244|ref|NP_939011.1| putative peptidoglycan synthesis related protein [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199503|emb|CAE49154.1| Putative peptidoglycan synthesis related protein [Corynebacterium
           diphtheriae]
          Length = 410

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 105/260 (40%), Gaps = 15/260 (5%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSK 96
             I  +   ++      + +V D++   +   K    RY PAS+ K +   +  + L   
Sbjct: 82  CGITKATGFDVPTNTASAWMVFDLDTGAVIATKDPHGRYRPASVIKALIALVAIDELD-- 139

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
              L+ ++ ++     Q  S +   E   ++ +Q +  L+  S ND ++A    + G E 
Sbjct: 140 ---LSKKVTITNDDVNQEGSAVGFVEGIDYSVQQLLDGLLLGSGNDAASALARALGG-ED 195

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR- 215
                +++ A+++G  +T   + +GL  +   T+ RD A++     +N P +        
Sbjct: 196 TTIKKINDLAQELGTVDTYAASYTGLDAQGMSTSVRDLAVIYQAAWQN-PVFADTVKKEY 254

Query: 216 -----KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
                        + N N +L    +  G KTG+T ++    V +       I AV++  
Sbjct: 255 SELPADKTGTTFQVWNDNGILMNTEHGIGGKTGFTDDAHHTFVGAKNINGRRIAAVILDT 314

Query: 271 PTSQER-DQKALELITSFLE 289
                R  ++A +LI +  +
Sbjct: 315 TIDLGRPWEQANKLIDAGYK 334


>gi|319937143|ref|ZP_08011550.1| hypothetical protein HMPREF9488_02385 [Coprobacillus sp. 29_1]
 gi|319807509|gb|EFW04102.1| hypothetical protein HMPREF9488_02385 [Coprobacillus sp. 29_1]
          Length = 406

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 57/286 (19%), Positives = 120/286 (41%), Gaps = 23/286 (8%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYS--SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           +   ++FLSI  I   + ++ +  YS  + + D + + +   K+ +E  YPAS+TK++T+
Sbjct: 9   IACLLIFLSIQPIHAYTNINIE-LYSQYAYLYDRDTSLVYMEKKSNEKIYPASMTKILTV 67

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
            +  +Y+      L   + + +        +  +   L      T E  +   +  S  D
Sbjct: 68  SLALDYITD----LQEVVTIKQADFKGVVEEGATVAGLFPGEKVTYEDLLYGALLPSGAD 123

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
              A    I G        M+ K  ++G+Q T + N +GLHD+   TTA + A++     
Sbjct: 124 ACQALARLIFGDVDHMVTAMNEKVIELGLQQTHFMNVTGLHDEKHYTTAHEMALILNHAL 183

Query: 203 --KNFPQYYKYFSIRKFRYRNRIITN-HNKLLNKMHN---IDGIKTGYTRNSGFNIVTSL 256
             K F + ++  S +  +  ++ I++  N   NK  +   I+G K+G+T  +G    +++
Sbjct: 184 QNKEFVKVFEARSYKSSKGNHQWISSLQNAKDNKDMDVSLINGGKSGFTDEAGLTYASTM 243

Query: 257 RYKDDPIVAVVMGMPTSQERD-----QKALELITSFLEKKTLKHQQ 297
                 ++ V       ++R+         + +        L  + 
Sbjct: 244 TIDQHRLILVTAKAEDRRKRNHIRDAATVSQYMDQSFHNVVLYKKD 289


>gi|291524311|emb|CBK89898.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale DSM 17629]
 gi|291527663|emb|CBK93249.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale M104/1]
          Length = 367

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 95/256 (37%), Gaps = 39/256 (15%)

Query: 56  SIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKL---------------- 98
           ++VID     +   K   E  YPAS+TK+MT+ +  E  +   +                
Sbjct: 99  AVVIDEQDGTVVAGKNAHEKMYPASMTKVMTVLVAAEQAEKNAIAAAENENTEIDRQAVI 158

Query: 99  --HLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
              LN  + +++ A       + S     +             I  S  + +     + +
Sbjct: 159 ENKLNEVVTITREATDYSYVHDCSTTGFLDGEQVPLRDVFNGTILPSGGESAYQLAVYTA 218

Query: 153 GSEKKFAILMSNKAKKIGM-QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK- 210
           GS + F  +M+ KA ++G+ Q T + N  G++D+N  +TA D A++     ++     K 
Sbjct: 219 GSMEAFVDMMNQKAAELGIGQTTHFANPVGIYDENNYSTAYDMAVIMQAAMQD--DICKT 276

Query: 211 -----YFSIRKFRYRNRIITNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLR-Y 258
                 +S          +   N  L ++ +      + G KTG+   SG   V+  +  
Sbjct: 277 VLSNHTYSTAATPQHPENLNISNLFLRRIEDKMTSGEVIGAKTGFVNQSGNCAVSYEKAA 336

Query: 259 KDDPIVAVVMGMPTSQ 274
                + V  G  +  
Sbjct: 337 SGKTYICVTAGASSGW 352


>gi|229158612|ref|ZP_04286671.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
 gi|228624926|gb|EEK81694.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
          Length = 273

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 61/276 (22%), Positives = 123/276 (44%), Gaps = 22/276 (7%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    I ID +  ++   K +DE  YPAS+ 
Sbjct: 3   VMIATLFTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIA 62

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A        K+ L+       ++ +  ++  S
Sbjct: 63  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 117

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        +  D A++  
Sbjct: 118 ADPIAESIAEHIAGSKNEFLKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAMITK 177

Query: 200 LLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTRNSGFNIVT 254
              K +P   +Y +  +       R+  I N+ +  L       G K+G +    + +VT
Sbjct: 178 EALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVT 236

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                   ++ VV+   T ++      ++     ++
Sbjct: 237 VDEKDGKRVINVVL-SSTRKQLYPDTKKMAHYAFQQ 271


>gi|34498608|ref|NP_902823.1| D-alanyl-D-alanine-endopeptidase [Chromobacterium violaceum ATCC
           12472]
 gi|34104462|gb|AAQ60820.1| D-alanyl-D-alanine-endopeptidase [Chromobacterium violaceum ATCC
           12472]
          Length = 289

 Score =  155 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 104/243 (42%), Gaps = 15/243 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
            +S ++++    +    K    R P AS++K+MT  ++ +        L+  + VS    
Sbjct: 42  SHSVLILNGQTGEALYEKNAHQRMPIASISKLMTAMVLLDSGAP----LDQMVTVSDAEI 97

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF-ISGSEKKFAILMSNKAKKI 169
            +   +   L   T  + ++ +L  +  S N  +         G    F   M+ KA+ +
Sbjct: 98  DRVKHTTSRLAVGTTLSRQEMLLLALMSSENRAAATLARTAFPGGTPIFVERMNLKARSL 157

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY---RNRIIT- 225
           GM  T++ + +GL  +N  +TA D A +    +K +P   ++ +  + +    RNR++  
Sbjct: 158 GMTETVFHDPTGLDVRNT-STAADLAKMVQAAQK-YPLIREFTTTERHQIVSVRNRVLQY 215

Query: 226 -NHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            N N L+     +I   KTGY + +G  +V        P++ V++    S  R   A  +
Sbjct: 216 KNSNALVREGDWDIAVQKTGYIQEAGRCMVLQATVGSQPLIFVLLDAGASSARANDAKNI 275

Query: 284 ITS 286
            T 
Sbjct: 276 RTW 278


>gi|320008978|gb|ADW03828.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           flavogriseus ATCC 33331]
          Length = 420

 Score =  155 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 90/271 (33%), Gaps = 28/271 (10%)

Query: 42  ISMASELHAKPK----YSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSK 96
           + +       PK     S IV D    Q+        R  PAS  KM+    +   LQ K
Sbjct: 59  VDLGPGAPVLPKDLSARSWIVADAEDGQVLASHNAHWRLPPASTLKMLFADTVLPALQPK 118

Query: 97  KLHLNTQIPVSKTA-ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
              L   +   + +   +  S + +KE   +T     L +  RS ND      E   G  
Sbjct: 119 --TLTHLVTEDELSGVGEGSSLVGVKEDHSYTVHDLWLGVFLRSGNDAVHVLSEMYGG-V 175

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
                 M   A+++   +T   +  G     Q+++A D  +      +    + +Y +  
Sbjct: 176 PATVAAMQRHAEELQALDTTVVSPDGYDAPRQVSSAYDLTLFARSGMQKA-DFREYAATA 234

Query: 216 KFRYRN----------RIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYK 259
              +              I N N+L+           I G+K GYT ++G          
Sbjct: 235 TAEFPGEVKKGKKRKSFEIQNTNRLITGDIGVEPYKGIAGVKNGYTTHAGNTFTGIAERD 294

Query: 260 DDPIVAVVMGMPTSQERD--QKALELITSFL 288
              ++  VM   + +     ++A  L+    
Sbjct: 295 GRVLLVTVMNPSSEESHAVYKEAAALLDWGF 325


>gi|225575670|ref|ZP_03784280.1| hypothetical protein RUMHYD_03763 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037127|gb|EEG47373.1| hypothetical protein RUMHYD_03763 [Blautia hydrogenotrophica DSM
           10507]
          Length = 337

 Score =  155 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 91/228 (39%), Gaps = 22/228 (9%)

Query: 56  SIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQS--KKLHLN-TQIPVSKTAA 111
           +++I  +  +     + +E  +PAS+TKMMT  + +E L     K+ LN           
Sbjct: 63  AVLIRRSTGEKIFDLRSEEKMFPASMTKMMTALVAYEQLSDLQTKITLNPDMF---DKLT 119

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
            +  S          T    +  ++  S  +      E+I+G E+ F  LM+ KA ++GM
Sbjct: 120 EEGASMAGFSAGEEVTALDLLYGVLLPSGAECCIGLAEYIAGDEESFVELMNQKATELGM 179

Query: 172 QNTIYKNASGLHDKNQITTARDQAI------LGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
            +T + N +GLHD+N  TT  D AI          LR+         +            
Sbjct: 180 NHTHFCNPTGLHDENHYTTVSDMAILLEALLEKEELRQIISTTSHTSTPTNLHPEGLTYP 239

Query: 226 NHNKLLNKMHN-------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAV 266
           +   +   M         I G KTGYT+ +G  + +  +   +  + V
Sbjct: 240 SS--MFEDMPADALASGLILGGKTGYTQEAGQCLASFGKADGEEYILV 285


>gi|182417161|ref|ZP_02948532.1| D-alanyl-D-alanine carboxypeptidase family [Clostridium butyricum
           5521]
 gi|237668489|ref|ZP_04528473.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182379003|gb|EDT76509.1| D-alanyl-D-alanine carboxypeptidase family [Clostridium butyricum
           5521]
 gi|237656837|gb|EEP54393.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 427

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 66/280 (23%), Positives = 123/280 (43%), Gaps = 28/280 (10%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPK---------YSSIVIDVNKNQMTGFKQ-DE 73
           +++N  L   IL LSI + S  + ++AK            ++I +D+   ++   K  D 
Sbjct: 1   MKKNFILKTLILTLSISLFSPLASINAKAATTAQPDINAQAAITMDLETGEIIYCKDADS 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL-------KEKTYF 126
            RYPAS        ++   L ++    + +I  +++A  Q    L +       K     
Sbjct: 61  KRYPAST-----TKLLTGLLLAENKQKSDEIAFTESAKIQPEYSLNINFMHNSMKVGDTM 115

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           + +  +  L+  S ND +    + ++G+ +KFA +M+ KAK+IG  N+ +  A+GLHD+N
Sbjct: 116 SADDVMKGLLLFSGNDTAYMIADNVAGNSQKFADMMNAKAKEIGANNSHFVTANGLHDEN 175

Query: 187 QITTARDQAILGILLRKN-FPQYYKYFSIRKFRYRNRI--ITNHNKLLNKMHNIDGIKTG 243
             TTA D +++     +N + +     +    +       + N N  L K  NI G KTG
Sbjct: 176 HYTTAYDLSLITKAAFQNDWERETMELADASIQINGAKVLLENRNLGLGKNGNIAG-KTG 234

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            T  +G  +          ++ VV+   + Q  +    + 
Sbjct: 235 LTNAAGGCLAAVYEVNGRKLIGVVL--KSRQVDNADMTKF 272


>gi|30023045|ref|NP_834676.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
 gi|29898605|gb|AAP11877.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
          Length = 273

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 61/276 (22%), Positives = 122/276 (44%), Gaps = 22/276 (7%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           +M   LF  +I  S A    A    +P  +    + ID +  ++   K +DE  YPAS+ 
Sbjct: 3   VMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDADTGEVLYGKREDERSYPASIA 62

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A        K+ L+       ++ +  ++  S
Sbjct: 63  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 117

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        +  D AI+  
Sbjct: 118 ADPIAESIAEHIAGSKNEFVKMMNTRAKELGTKHATFKNASGADALGNKVSPYDIAIITK 177

Query: 200 LLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTRNSGFNIVT 254
              K +P   +Y +  +       R+  I N+ +  L       G K+G +    + +VT
Sbjct: 178 EALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVT 236

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                   ++ VV+   T  +      ++     ++
Sbjct: 237 VDEKDGKRVINVVL-SSTRAQLYPDTKKMAHYAFQQ 271


>gi|302519514|ref|ZP_07271856.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB78]
 gi|302428409|gb|EFL00225.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB78]
          Length = 489

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 58/306 (18%), Positives = 100/306 (32%), Gaps = 47/306 (15%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKY----SSIVIDVNKNQMTGFKQDE-PRYPAS 79
            R+    G  L L    ++  +     PK     S +V D    ++   +       PAS
Sbjct: 37  ARSSATGGARLALPGTQVAPGAGAPKLPKKLTARSWVVADAESGEILAARNPHWKLAPAS 96

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-LYLKEKTYFTTEQGILALITR 138
             KM+    +       K+H   Q+ +         S  + +KE   ++     L +  R
Sbjct: 97  TLKMLFADTLLPKFSKDKVH---QVTLKDLDGIGEGSSLVGIKEDLPYSVHDLWLGVFLR 153

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND         +G   +    M  +A ++   +T      G   K Q+++A D  +  
Sbjct: 154 SGNDAVHVLSSMNNG-VAQTVRDMQARAHELQANDTHVVTPDGYDAKGQVSSAYDLTLFA 212

Query: 199 ILLRKNFPQYYKYFSIRKFRYRN----------------------------RIITNHNKL 230
               KN P + +Y S  + ++                                I N N+L
Sbjct: 213 RDGLKN-PDFREYCSTAEAQFPGEFAKKKKDKNKKKATDGQAGPEQRPREHFGIQNTNRL 271

Query: 231 L------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM--GMPTSQERDQKALE 282
           L           I G+K G T N+G       +  D  ++  VM      SQ   ++A  
Sbjct: 272 LTGTYDLKPYQGIAGVKNGNTTNAGATYTAYAQRGDRKLLVTVMHPDYDESQAVYREAAR 331

Query: 283 LITSFL 288
           L+    
Sbjct: 332 LLDWGF 337


>gi|152977277|ref|YP_001376794.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152026029|gb|ABS23799.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH
           391-98]
          Length = 279

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 128/284 (45%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASEL----HAKPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF+ +I  S A         +P  +    I ID +  ++   K +DE
Sbjct: 1   MKRTIIMIVMISTLFIGMIFFSYAQRQKNIRADQPPITGKYGITIDADTGEILYGKREDE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ K+MT  ++ E ++      + +I +++ A        K+ L        ++ 
Sbjct: 61  RSYPASIAKIMTTILLLENVKK-----DEEITITENAIKTESQSKKIKLHAGEKLKRDEA 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ VS +  E I+GS+++F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 116 LKLMLIISADPVSESIAEHIAGSKEEFVKMMNTRAKELGTKHATFKNASGADALGNKVSP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D AIL     K +P   KY +  +       R   + N+ +  L       G K+G + 
Sbjct: 176 YDIAILTKEALK-YPIVLKYMNTTRTTLHTSERTVKLANYGREELYDDPYAIGSKSGLSA 234

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT    +   ++ VV+   T  E      ++    L++
Sbjct: 235 LGKYTVVTVDEKEGKRVITVVL-SSTRHELYPDTKKMAHYALKQ 277


>gi|229169729|ref|ZP_04297429.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
 gi|228613768|gb|EEK70893.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
          Length = 301

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 126/284 (44%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A         +P  +    I ID +  ++   K +DE
Sbjct: 23  MKRTIIMIVMIATLFTGMIFFSYAQRQQVVRADQPNITGQYGITIDADTGKILYGKREDE 82

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      + +I V++ A        K+ L+       ++ 
Sbjct: 83  RSYPASIAKMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 137

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+++AK++G ++  +KNASG        + 
Sbjct: 138 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNSRAKELGTKHATFKNASGADALGNKVSP 197

Query: 192 RDQAILGILLRKNFPQYYKYF----SIRKFRYRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D AI+     K +P   +Y     +      R+  I N+ +  L       G K+G + 
Sbjct: 198 YDIAIITKEALK-YPIVLEYMNSIHTTLHTSERSPKIANYGREELYDDPYAIGSKSGLSA 256

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T  +      ++     ++
Sbjct: 257 LGKYTVVTVDEKDGKRVINVVL-SSTRTQLYPDTKKMSHYAFQQ 299


>gi|238917380|ref|YP_002930897.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
           5/6) [Eubacterium eligens ATCC 27750]
 gi|238872740|gb|ACR72450.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
           5/6) [Eubacterium eligens ATCC 27750]
          Length = 370

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 109/245 (44%), Gaps = 15/245 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           + SE      Y++++ DV+ +++   KQ D   YPAS+TK+MTL ++ + +         
Sbjct: 101 LTSESKVSSPYAALL-DVDNHKIIAGKQADTRMYPASMTKVMTLIVVTDNIDKIPQTYTF 159

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
              +      +  S     +      E  +  LI  S  D + A    ++GS ++FA LM
Sbjct: 160 GFEMLNRLFREEASVAGFLDGETVDVEDLLYGLILPSGADAAEALAIMVAGSNEEFAKLM 219

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY-----YKYFSIRKF 217
           + K  ++G+++T + N +GL+D+ Q TT  + A++     ++  +      Y+Y +    
Sbjct: 220 NAKCNELGLKHTRFANPTGLYDEEQYTTPAEMAMIMEYAMRDELRAKVLGTYQYKTKATA 279

Query: 218 RYRNRIITNHNKLLNKMHN-------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           ++ + I    + + ++++        + G KTG+   +G  +V+              G 
Sbjct: 280 QHPDGIQL-TSTMYSRIYGNEAPGVIVKGGKTGFISQAGSCLVSYAVTNKGHAYVFCTGG 338

Query: 271 PTSQE 275
            T + 
Sbjct: 339 ATYKW 343


>gi|291558993|emb|CBL37793.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
           SSC/2]
          Length = 322

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 114/249 (45%), Gaps = 27/249 (10%)

Query: 57  IVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           ++++  KN++    K  +  YPAS TK+MT  +  E      L+L+  + +       + 
Sbjct: 78  LLVNNTKNKVIVSQKVFDQAYPASTTKIMTALLTLE-----NLNLSQVVTIKHDITFPDG 132

Query: 116 SK--LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           +   ++LK+    T E  + ALI  SAND + A GE ++GSE  F  +M+ +AK++G  N
Sbjct: 133 AAVAIHLKKGDKITVEALLNALIIMSANDAAVALGEAVAGSEANFVKMMNKRAKELGATN 192

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF----------------SIRKF 217
           T + N +GLH  +  +TA D  ++   + K   +++                    I   
Sbjct: 193 THFANPNGLHLSDHYSTAYDLYLIFKEVAK-HNEFFNIAGRSSSRIEYLGSKGEQKIYDM 251

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVMGMPTSQER 276
              N+ I     L ++++ I G KTG T  +G  ++   +    +  ++VV+   T    
Sbjct: 252 ASTNQYIAGTYTLPSQVYMI-GGKTGTTTQAGSCLILLTKNKDGEEFISVVLKGVTKSAL 310

Query: 277 DQKALELIT 285
                ++++
Sbjct: 311 YHTMTDILS 319


>gi|229175705|ref|ZP_04303213.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
 gi|228607846|gb|EEK65160.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
          Length = 301

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 127/284 (44%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A    A    +P  +    I ID +  ++   K +DE
Sbjct: 23  MKRTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGITIDADTGEILYGKREDE 82

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      N +I V++ A        K+ L+       ++ 
Sbjct: 83  RSYPASIGKMMTTLLLLENVKE-----NEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 137

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 138 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSP 197

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D A++     K +P   +Y +  +       R+  I N+ +  L       G K+G + 
Sbjct: 198 YDIAMITKEALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSA 256

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T  +      ++     ++
Sbjct: 257 LGKYTVVTVDEKDGKRVINVVL-SSTRTQLYPDTKKMAHYAFQQ 299


>gi|229087522|ref|ZP_04219654.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44]
 gi|228695769|gb|EEL48622.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44]
          Length = 273

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 62/276 (22%), Positives = 121/276 (43%), Gaps = 22/276 (7%)

Query: 30  LMGKILFLSIIMISMAS-------ELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLT 81
           ++   LF S+I  S A           A     +I ID +  ++   K+++ R YPAS+ 
Sbjct: 3   VVIATLFTSMIFFSYAKRQKDVRVNQPAITGKYAITIDADTGEILYGKREQERSYPASIA 62

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I +++ A        K+ L+       ++ +  ++  S
Sbjct: 63  KMMTTLLLLENVKK-----DEEITITENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 117

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           A+ VS +  E I+GS++ F  +M+ +AK++G ++  +KNASG        +  D AI+  
Sbjct: 118 ADPVSESIAEHIAGSKEAFIKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAIITK 177

Query: 200 LLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTRNSGFNIVT 254
              K +P    Y +  +       R+  I N+ +  L       G K+G +    + +VT
Sbjct: 178 EALK-YPIVLDYMNTTRTTLHTSMRSPKIANYGREELYDDPYAIGSKSGLSALGNYTVVT 236

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                   ++ VV+   T  +      ++     E+
Sbjct: 237 VNEMNGKRVINVVL-SSTRNQLYPDTKKMAHYAFEQ 271


>gi|167765525|ref|ZP_02437589.1| hypothetical protein CLOSS21_00019 [Clostridium sp. SS2/1]
 gi|167712710|gb|EDS23289.1| hypothetical protein CLOSS21_00019 [Clostridium sp. SS2/1]
          Length = 311

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 114/249 (45%), Gaps = 27/249 (10%)

Query: 57  IVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           ++++  KN++    K  +  YPAS TK+MT  +  E      L+L+  + +       + 
Sbjct: 67  LLVNNTKNKVIVSQKVFDQAYPASTTKIMTALLTLE-----NLNLSQVVTIKHDITFPDG 121

Query: 116 SK--LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           +   ++LK+    T E  + ALI  SAND + A GE ++GSE  F  +M+ +AK++G  N
Sbjct: 122 AAVAIHLKKGDKITVEALLNALIIMSANDAAVALGEAVAGSEANFVKMMNKRAKELGATN 181

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF----------------SIRKF 217
           T + N +GLH  +  +TA D  ++   + K   +++                    I   
Sbjct: 182 THFANPNGLHLSDHYSTAYDLYLIFKEVAK-HNEFFNIAGRSSSRIEYLGSKGEQKIYDM 240

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVMGMPTSQER 276
              N+ I     L ++++ I G KTG T  +G  ++   +    +  ++VV+   T    
Sbjct: 241 ASTNQYIAGTYTLPSQVYMI-GGKTGTTTQAGSCLILLTKNKDGEEFISVVLKGVTKSAL 299

Query: 277 DQKALELIT 285
                ++++
Sbjct: 300 YHTMTDILS 308


>gi|291445469|ref|ZP_06584859.1| predicted protein [Streptomyces roseosporus NRRL 15998]
 gi|291348416|gb|EFE75320.1| predicted protein [Streptomyces roseosporus NRRL 15998]
          Length = 838

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 79/326 (24%), Positives = 139/326 (42%), Gaps = 44/326 (13%)

Query: 26  RNIQLMGKILFLSIIMISMAS----------ELHAKPKY----------------SSIVI 59
           R +++   ++ L +I+ ++            EL AKP Y                S+++I
Sbjct: 436 RRVKIWTPLVLLLLIVFAIVQVMRPLPEPSLELTAKPTYTFEGGGTELSWPGQGQSAVMI 495

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NP 115
           D     +      +P   AS+ K+MT Y+I +    K      +I V + A  +    + 
Sbjct: 496 D-GVGSLGSEGAQKPAPIASVAKVMTAYVILQEHPLKGDEEGEKITVDQQAEDESKRPDE 554

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S   L +    T  Q +  L+  S N+ +     + +GSE  F   M++ AK+IGM  + 
Sbjct: 555 STAPLTKGQELTQRQLLQLLMIPSGNNAARLLARWDAGSEDAFIDKMNDAAKEIGMTGST 614

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           Y + SGL +K  ++TA DQ  L   + +N  F +      +       +I  N+N LL  
Sbjct: 615 YTDPSGL-EKTTVSTATDQLKLAQAVMRNDVFREIVDMPEVEIEGIDGKIYNNNNLLLQ- 672

Query: 234 MHNIDGIKTGYTRNSGFNIVTSL--RYKDDPI--VAVVMGMPTSQERDQKALELITSFLE 289
              + GIKTG +  +G N++ S   +     +     VMG      R   +LEL      
Sbjct: 673 -PGVSGIKTGSSTPAGGNLLWSANTKVDGKMLWIYGAVMGQQAGTGRVYDSLEL----SL 727

Query: 290 KKTLKHQQTHRKDNLSSTSLKKSLMI 315
           + +LK  +  ++   S+T +KK  ++
Sbjct: 728 QNSLKLIKDAQEAATSATVVKKGDVV 753


>gi|229072497|ref|ZP_04205699.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
 gi|228710473|gb|EEL62446.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
          Length = 273

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/276 (21%), Positives = 123/276 (44%), Gaps = 22/276 (7%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           +M   LF  +I  S A    +    +P  +    + ID +  ++   K +DE  YPAS+ 
Sbjct: 3   VMIATLFTGMIFFSYAQRQQSVRADQPNITGQYGVTIDADTGEILYGKREDERSYPASIA 62

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I V++ A        K+ L+       ++ +  ++  S
Sbjct: 63  KMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 117

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        +  D AI+  
Sbjct: 118 ADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAIITK 177

Query: 200 LLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTRNSGFNIVT 254
              K +P   +Y +  +       R+  I N+ +  L       G K+G +    + +VT
Sbjct: 178 EALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVT 236

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                   ++ VV+   T ++      ++     ++
Sbjct: 237 VDEKDGKRVINVVL-SSTRKQLYPDTKKMAHYAFQQ 271


>gi|314934816|ref|ZP_07842175.1| penicillin-binding protein 4 [Staphylococcus caprae C87]
 gi|313652746|gb|EFS16509.1| penicillin-binding protein 4 [Staphylococcus caprae C87]
          Length = 388

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 62/304 (20%), Positives = 128/304 (42%), Gaps = 35/304 (11%)

Query: 64  NQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKL 118
            Q+   + +++   PASLTKMMT+Y+  + ++S K+H+  +I ++   A      N S +
Sbjct: 57  GQILYNYNENKKVDPASLTKMMTMYLTLDAVKSGKIHMKDKIKITSKQAQLSQKSNLSSV 116

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            L+    +T +  +      S+N  +   G  +S S   F   M+ +AK   M++T + +
Sbjct: 117 PLEAGQTYTVKDILSQTALASSNAAALILGAKVSSSTSTFTDKMNQQAKTFHMKDTHFTS 176

Query: 179 ASGLHDK--------------NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII 224
            +G   +                 +T++D  I+   + K  P+  K    +    + +  
Sbjct: 177 PAGADTELLGSSAPQKYKNQGKTSSTSKDMNIMMYHMIKEHPEILKTTQNKSDTQKGQSF 236

Query: 225 TNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM---PTSQE-- 275
            + N  L          DG+KTG T +SG+++  + +     +   ++ +   P+     
Sbjct: 237 ESTNLSLKGQPKYYKGTDGLKTG-TSDSGYSLALTNKQHGLRLNETILDVTPYPSETAKL 295

Query: 276 -RDQKALELITSF---LEKKTLKHQQTHRKDNLSSTSLKK--SLMIKKLKRTYSQFKKID 329
            R++ A +++  +    E K +  +  H+ D    T  K    ++ K  K   +   K +
Sbjct: 296 NRNEIANDMMKYYRKQYEYKKVLSKGEHQIDGKKYTVKKDLYDVVPKHKKWYIAINDKGN 355

Query: 330 AKAH 333
           A  H
Sbjct: 356 AYVH 359


>gi|239942020|ref|ZP_04693957.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           roseosporus NRRL 15998]
          Length = 822

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 79/326 (24%), Positives = 139/326 (42%), Gaps = 44/326 (13%)

Query: 26  RNIQLMGKILFLSIIMISMAS----------ELHAKPKY----------------SSIVI 59
           R +++   ++ L +I+ ++            EL AKP Y                S+++I
Sbjct: 420 RRVKIWTPLVLLLLIVFAIVQVMRPLPEPSLELTAKPTYTFEGGGTELSWPGQGQSAVMI 479

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NP 115
           D     +      +P   AS+ K+MT Y+I +    K      +I V + A  +    + 
Sbjct: 480 D-GVGSLGSEGAQKPAPIASVAKVMTAYVILQEHPLKGDEEGEKITVDQQAEDESKRPDE 538

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S   L +    T  Q +  L+  S N+ +     + +GSE  F   M++ AK+IGM  + 
Sbjct: 539 STAPLTKGQELTQRQLLQLLMIPSGNNAARLLARWDAGSEDAFIDKMNDAAKEIGMTGST 598

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           Y + SGL +K  ++TA DQ  L   + +N  F +      +       +I  N+N LL  
Sbjct: 599 YTDPSGL-EKTTVSTATDQLKLAQAVMRNDVFREIVDMPEVEIEGIDGKIYNNNNLLLQ- 656

Query: 234 MHNIDGIKTGYTRNSGFNIVTSL--RYKDDPI--VAVVMGMPTSQERDQKALELITSFLE 289
              + GIKTG +  +G N++ S   +     +     VMG      R   +LEL      
Sbjct: 657 -PGVSGIKTGSSTPAGGNLLWSANTKVDGKMLWIYGAVMGQQAGTGRVYDSLEL----SL 711

Query: 290 KKTLKHQQTHRKDNLSSTSLKKSLMI 315
           + +LK  +  ++   S+T +KK  ++
Sbjct: 712 QNSLKLIKDAQEAATSATVVKKGDVV 737


>gi|318061826|ref|ZP_07980547.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SA3_actG]
          Length = 499

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 58/306 (18%), Positives = 100/306 (32%), Gaps = 47/306 (15%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKY----SSIVIDVNKNQMTGFKQDE-PRYPAS 79
            R+    G  L L    ++  +     PK     S +V D    ++   +       PAS
Sbjct: 37  ARSSATGGARLALPGTQVAPGAGAPKLPKKLTARSWVVADAESGEILAARNPHWKLAPAS 96

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-LYLKEKTYFTTEQGILALITR 138
             KM+    +       K+H   Q+ +         S  + +KE   ++     L +  R
Sbjct: 97  TLKMLFADTLLPKFSKDKVH---QVTLKDLDGIGEGSSLVGIKEDLPYSVHDLWLGVFLR 153

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND         +G   +    M  +A ++   +T      G   K Q+++A D  +  
Sbjct: 154 SGNDAVHVLSSMNNG-VAQTVRDMQARAHELQANDTHVVTPDGYDAKGQVSSAYDLTLFA 212

Query: 199 ILLRKNFPQYYKYFSIRKFRYRN----------------------------RIITNHNKL 230
               KN P + +Y S  + ++                                I N N+L
Sbjct: 213 RDGLKN-PDFREYCSTAEAQFPGEFAKKKKDKDKKKATDGQAGPEQRPREHFGIQNTNRL 271

Query: 231 L------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM--GMPTSQERDQKALE 282
           L           I G+K G T N+G       +  D  ++  VM      SQ   ++A  
Sbjct: 272 LTGTYDLKPYQGIAGVKNGNTTNAGATYTAYAQRGDRKLLVTVMHPDYDESQAVYREAAR 331

Query: 283 LITSFL 288
           L+    
Sbjct: 332 LLDWGF 337


>gi|330817941|ref|YP_004361646.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           gladioli BSR3]
 gi|327370334|gb|AEA61690.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           gladioli BSR3]
          Length = 411

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 94/247 (38%), Gaps = 35/247 (14%)

Query: 58  VIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQ--SKKLHLN----TQIPVSKTA 110
           V+D     +   +   + R  AS++K+MT  +  +     ++++ +       I  +   
Sbjct: 176 VVDERTGTVLLERNASQIRPIASVSKLMTAVVSLDRHAPLARRISVTGADRDTIKFT--- 232

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S+  LK  +  +    +   +  S N  + A      G    F   M+ KA+ +G
Sbjct: 233 ----GSR--LKVGSTLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFVAAMNRKARTLG 286

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR----------YR 220
           M NT + NA+GL     ++TARD + L     +       Y +IR F           + 
Sbjct: 287 MSNTHFVNATGLS-PRNVSTARDLSRLVAAANR-------YSTIRAFSTDRAQIVRPGHG 338

Query: 221 NRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
                N N L+      I   KTG+   +G  +V   +    P+  V++  P  ++    
Sbjct: 339 QLSYVNSNALVRGGDRRITLQKTGFINEAGHCVVMRYQIGARPVDVVLLDAPGPRDHIAD 398

Query: 280 ALELITS 286
           A+ +   
Sbjct: 399 AIRIRNW 405


>gi|291460023|ref|ZP_06599413.1| putative D-alanyl-D-alanine carboxypeptidase [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291417364|gb|EFE91083.1| putative D-alanyl-D-alanine carboxypeptidase [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 338

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 96/234 (41%), Gaps = 15/234 (6%)

Query: 56  SIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++V D+++ ++   K   E   PAS+TK+MTL +  E+L      L     +       +
Sbjct: 91  AVVYDLDRGRIIADKNSSEVINPASMTKVMTLLVCAEHLPDLDKRLTVTQDIVDYVHAHD 150

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN- 173
            S   L+     +    +  +I  S  D        I+GSE  F  LM+ KA+++G+ + 
Sbjct: 151 ASNCGLEAGEQISVRDLLYGVILPSGADAVMLLSREIAGSEAAFVGLMNQKARELGLSSG 210

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY-----FSIRKFRYRNRIITNHN 228
             + NA+GL+D N   T +D A +     KN P          +SI         I   N
Sbjct: 211 AHFSNATGLYDPNHHMTVKDTAEILNAAMKN-PTARTVLESFEYSIPATNKHAAGIRLSN 269

Query: 229 KLLNKMHNIDGI-------KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
             L ++   D         KTGY R S F  V+S   +      VV G  +S  
Sbjct: 270 LFLKRIKGQDTGRVSVTAAKTGYVRQSMFCAVSSGVSESGKHYLVVSGFASSTW 323


>gi|326942829|gb|AEA18725.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 280

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 126/284 (44%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A    A    +P  +    + ID    ++   K +DE
Sbjct: 2   MKRTIVMIVMIATLFTGMIFFSYAQRQQAVRADQPNITGQYGVTIDAKTGEILYGKREDE 61

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      + +I V++ A        K+ L+       ++ 
Sbjct: 62  RSYPASIAKMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 116

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 117 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADAIGNKVSP 176

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D AI+     K +P   +Y +  +       R+  I N+ +  L       G K+G + 
Sbjct: 177 YDIAIITKEALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSA 235

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T  +      ++     ++
Sbjct: 236 LGKYTVVTVDEKDGKRVINVVL-SSTRAQLYPDTKKMAHYAFQQ 278


>gi|167749407|ref|ZP_02421534.1| hypothetical protein EUBSIR_00361 [Eubacterium siraeum DSM 15702]
 gi|167657579|gb|EDS01709.1| hypothetical protein EUBSIR_00361 [Eubacterium siraeum DSM 15702]
          Length = 349

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 98/262 (37%), Gaps = 39/262 (14%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSK-------KLHLNTQIPV 106
           ++I  D+   ++   K   +  +PAS TK++T     EY   +       +L L      
Sbjct: 87  AAICYDLTDGKVIYSKNAGKKVFPASTTKILTALTAIEYTAPEYEYYVGSELGL------ 140

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-----------GSE 155
                 Q+ S  ++ E +     + + A++  S ND +      ++            + 
Sbjct: 141 ----VAQDSSMSWIAEGSSLCRNEILTAMLAPSGNDAAYTIAVNVARKLYGDDISDNDAV 196

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             FA+LM++ AKK+G +NT +    G HD    TTA D     I   ++           
Sbjct: 197 AYFAVLMNDYAKKLGAKNTHFTVPDGYHDDEHYTTAEDMLQFAIAATQS-RTICDITCQP 255

Query: 216 -----KFRYRNRIITNHNKLLNKM---HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
                  +       N NKLL      + + G+KTG+T  +GF  +         I+ +V
Sbjct: 256 LAIVYDEQGNVHSWDNGNKLLTDTTIPYEVYGMKTGFTDEAGFCFIGYAGMNGKKILTLV 315

Query: 268 MGMPTSQERDQKALELITSFLE 289
            G      R     +L+    +
Sbjct: 316 YGGEVEN-RYADTKKLMDLGFD 336


>gi|318076420|ref|ZP_07983752.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SA3_actF]
          Length = 374

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/306 (18%), Positives = 100/306 (32%), Gaps = 47/306 (15%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKY----SSIVIDVNKNQMTGFKQDE-PRYPAS 79
            R+    G  L L    ++  +     PK     S +V D    ++   +       PAS
Sbjct: 37  ARSSATGGARLALPGTQVAPGAGAPKLPKKLTARSWVVADAESGEILAARNPHWKLAPAS 96

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-LYLKEKTYFTTEQGILALITR 138
             KM+    +       K+H   Q+ +         S  + +KE   ++     L +  R
Sbjct: 97  TLKMLFADTLLPKFSKDKVH---QVTLKDLDGIGEGSSLVGIKEDLPYSVHDLWLGVFLR 153

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND         +G   +    M  +A ++   +T      G   K Q+++A D  +  
Sbjct: 154 SGNDAVHVLSSMNNG-VAQTVRDMQARAHELQANDTHVVTPDGYDAKGQVSSAYDLTLFA 212

Query: 199 ILLRKNFPQYYKYFSIRKFRYRN----------------------------RIITNHNKL 230
               KN P + +Y S  + ++                                I N N+L
Sbjct: 213 RDGLKN-PDFREYCSTAEAQFPGEFAKKKKDKDKKKATDGQAGPEQRPREHFGIQNTNRL 271

Query: 231 L------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM--GMPTSQERDQKALE 282
           L           I G+K G T N+G       +  D  ++  VM      SQ   ++A  
Sbjct: 272 LTGTYDLKPYQGIAGVKNGNTTNAGATYTAYAQRGDRKLLVTVMHPDYDESQAVYREAAR 331

Query: 283 LITSFL 288
           L+    
Sbjct: 332 LLDWGF 337


>gi|291532121|emb|CBK97706.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum 70/3]
          Length = 349

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 98/262 (37%), Gaps = 39/262 (14%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSK-------KLHLNTQIPV 106
           ++I  D+   ++   K   +  +PAS TK++T     EY   +       +L L      
Sbjct: 87  AAICYDLTDGKVIYSKNAGKKVFPASTTKILTALTAIEYTAPEYEYYVGSELGL------ 140

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-----------GSE 155
                 Q+ S  ++ E +     + + A++  S ND +      ++            + 
Sbjct: 141 ----VAQDSSMSWIAEGSSLCRNEILTAMLAPSGNDAAYTIAVNVARKLYGDDISDNDAV 196

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             FA+LM++ AKK+G +NT +    G HD    TTA D     I   ++           
Sbjct: 197 AYFAVLMNDYAKKLGAKNTHFTVPDGYHDDEHYTTAEDMLKFAIAATQS-QTICDITCQP 255

Query: 216 -----KFRYRNRIITNHNKLLNKM---HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
                  +       N NKLL      + + G+KTG+T  +GF  +         I+ +V
Sbjct: 256 LAIVYDEQGNVHSWDNGNKLLTDTTIPYEVYGMKTGFTDEAGFCFIGYAGMNGKKILTLV 315

Query: 268 MGMPTSQERDQKALELITSFLE 289
            G      R     +L+    +
Sbjct: 316 YGGEVEN-RYADTKKLMDLGFD 336


>gi|219853360|ref|YP_002470482.1| hypothetical protein CKR_0017 [Clostridium kluyveri NBRC 12016]
 gi|219567084|dbj|BAH05068.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 316

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 100/238 (42%), Gaps = 20/238 (8%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAA 111
           I+I +  + +   K  +E  YPASLTK+MT  +  E L +    L  +I ++    +   
Sbjct: 68  ILIRLKDHAILMQKNSEEKIYPASLTKIMTAIVAIENLPN----LKEEIRLTNSTFQRLY 123

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S    +     +    +   +  S  +        I+GSE+ F  +M+ KA  +GM
Sbjct: 124 EADASMTGFQPGEKVSAIDLLYGALLPSGAESCIGLANQIAGSEQGFVKMMNQKAADLGM 183

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYK--YFSIRKFRYRNRIITNH 227
            NT ++N +G+H++N  TT  + A+L     +N  F   +     S +        IT +
Sbjct: 184 DNTHFENVTGIHNENHYTTVENLAVLLSYALQNDTFRDIFTSSRHSTQPTNKHPDGITFY 243

Query: 228 NKLLNKMHN-------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           + +  ++ N       I G KTGYT   G  + +  +      + +  G       +Q
Sbjct: 244 STMFEELDNQNIIDGEILGGKTGYTDEVGLCLASLAKVGRQEYILISAGAKGDHHSEQ 301


>gi|229193289|ref|ZP_04320240.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
 gi|228590266|gb|EEK48134.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
          Length = 279

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 62/284 (21%), Positives = 127/284 (44%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A    +    +P  +    + ID +  ++   K +DE
Sbjct: 1   MKRTIVMIVMIATLFTGMIFFSYAQRQQSVRANQPNITGQYGVTIDADTGEILYGKREDE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      + +I V++ A        K+ L+       ++ 
Sbjct: 61  RSYPASIAKMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 116 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D AI+     K +P   +Y +  +       R+  I N+ +  L       G K+G + 
Sbjct: 176 YDIAIITKEALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSA 234

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T  +      ++     ++
Sbjct: 235 LGKYTVVTVDEKDGKRVINVVL-SSTRAQLYPDTKKMAHYAFQQ 277


>gi|218512347|ref|ZP_03509187.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli 8C-3]
          Length = 221

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 83/158 (52%)

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            I  +  + AND      E ++GSE++FA  M+ +A+++GM+  ++ N++GL D     T
Sbjct: 1   MIKGVAIQGANDSCIILAEGMAGSEQQFAQSMTRRARELGMEKAVFGNSTGLPDGKSKVT 60

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           AR+   L   L++++P  Y YF+   F +      N N LL      DG+ TG+    G+
Sbjct: 61  AREMVTLATTLQQSYPNLYPYFAQLDFEWNKIFQRNRNPLLGLDLGADGLATGFADGEGY 120

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           +IV S++     +   + G+ + +ER ++A  ++   L
Sbjct: 121 SIVASVQRDGRRLFLALAGIASDKERTEEAKRVLEWGL 158


>gi|291558140|emb|CBL35257.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum V10Sc8a]
          Length = 349

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 98/262 (37%), Gaps = 39/262 (14%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSK-------KLHLNTQIPV 106
           ++I  D+   ++   K   +  +PAS TK++T     EY   +       +L L      
Sbjct: 87  AAICYDLTDGKVIYSKNAGKKVFPASTTKILTALTAIEYTAPEYEYYVGSELGL------ 140

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-----------GSE 155
                 Q+ S  ++ E +     + + A++  S ND +      ++            + 
Sbjct: 141 ----VAQDSSMSWIAEGSSLCRNEILTAMLAPSGNDAAYTIAVNVARKLYGDDISDNDAV 196

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
             FA+LM++ AKK+G +NT +    G HD    TTA D     I   ++           
Sbjct: 197 AYFAVLMNDYAKKLGAKNTHFTVPDGYHDDEHYTTAEDMLKFAIAATQS-QTICDITCQP 255

Query: 216 -----KFRYRNRIITNHNKLLNKM---HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
                  +       N NKLL      + + G+KTG+T  +GF  +         I+ +V
Sbjct: 256 LAIVYDEQGNVHSWDNGNKLLTDTTIPYEVYGMKTGFTDEAGFCFIGYAGMNGKKILTLV 315

Query: 268 MGMPTSQERDQKALELITSFLE 289
            G      R     +L+    +
Sbjct: 316 YGGEVEN-RYADTKKLMDLGFD 336


>gi|221209869|ref|ZP_03582850.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           multivorans CGD1]
 gi|221170557|gb|EEE03023.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           multivorans CGD1]
          Length = 364

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 98/236 (41%), Gaps = 13/236 (5%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++ V+DV+       +     R  AS++K+MT  +  +  +     L  ++  +     +
Sbjct: 126 AAYVLDVDSGTPLLARNARTVRPIASISKLMTAVVARDADRPLNGVL--RVTANDRDTIK 183

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S+  L+  +  +        +  S N  + A      G    F   M+ +A+++GM+
Sbjct: 184 FTGSR--LQVGSELSRRDMFHIALMSSENRAAAALSRDYPGGRAAFVKAMNREARRLGMR 241

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR----IITNHN 228
           +T ++  +GL   + ++TA D A L     ++ P    + + R    R      +  N +
Sbjct: 242 HTHFREPTGLS-PHNVSTAEDLARLVDAAAQD-PLIRYFSTDRSTTVRPGDGELLYVNSD 299

Query: 229 KLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            L+  +   I   KTG+   SG  +V  +R K      V++G PT       A+++
Sbjct: 300 PLVRYRRLPIRLQKTGFINESGHGVVMRMRVKGRRTTVVLLGAPTRAGVSSDAIKI 355


>gi|153952688|ref|YP_001393453.1| D-alanyl-D-alanine carboxypeptidase precursor [Clostridium kluyveri
           DSM 555]
 gi|146345569|gb|EDK32105.1| Predicted D-alanyl-D-alanine carboxypeptidase precursor
           [Clostridium kluyveri DSM 555]
          Length = 310

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 100/238 (42%), Gaps = 20/238 (8%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAA 111
           I+I +  + +   K  +E  YPASLTK+MT  +  E L +    L  +I ++    +   
Sbjct: 62  ILIRLKDHAILMQKNSEEKIYPASLTKIMTAIVAIENLPN----LKEEIRLTNSTFQRLY 117

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             + S    +     +    +   +  S  +        I+GSE+ F  +M+ KA  +GM
Sbjct: 118 EADASMTGFQPGEKVSAIDLLYGALLPSGAESCIGLANQIAGSEQGFVKMMNQKAADLGM 177

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYK--YFSIRKFRYRNRIITNH 227
            NT ++N +G+H++N  TT  + A+L     +N  F   +     S +        IT +
Sbjct: 178 DNTHFENVTGIHNENHYTTVENLAVLLSYALQNDTFRDIFTSSRHSTQPTNKHPDGITFY 237

Query: 228 NKLLNKMHN-------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           + +  ++ N       I G KTGYT   G  + +  +      + +  G       +Q
Sbjct: 238 STMFEELDNQNIIDGEILGGKTGYTDEVGLCLASLAKVGRQEYILISAGAKGDHHSEQ 295


>gi|75764312|ref|ZP_00743846.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74488199|gb|EAO51881.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 228

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 102/221 (46%), Gaps = 26/221 (11%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMIS---MASELHAK---PKYSSIVIDVNKNQMTGFKQ-D 72
             ++ +R I L+  I     I +     ++E  A       ++I+++ N  ++   K  D
Sbjct: 7   KGMFCKRFIALVTVITLACSIFMPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNAD 66

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKK-LHLNTQIPVSKTA----ATQNPSKLYLKEKTYFT 127
           E    AS+TKMM+ Y++ E +   K L    +I VS+ A       + S + L+    +T
Sbjct: 67  ELLSIASMTKMMSEYLVHEAVDKGKPLSGTQKIKVSEYAYKVSQDASLSNVALENGGSYT 126

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL----- 182
            ++   A+   SAN  + A  E I+G E  F  +M++K+K++G++N  + N++GL     
Sbjct: 127 VKELYEAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDL 186

Query: 183 ---------HDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
                     D+    +A+D A L   L K++P+       
Sbjct: 187 KGMHPEGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKT 227


>gi|317498476|ref|ZP_07956770.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316894169|gb|EFV16357.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 322

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 114/249 (45%), Gaps = 27/249 (10%)

Query: 57  IVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           ++++  KN++    K  +  YPAS TK+MT  +  E      L+L+  + +       + 
Sbjct: 78  LLVNNTKNKVIVSQKVFDQAYPASTTKIMTALLTLE-----NLNLSQVVTIKHDITFPDG 132

Query: 116 SK--LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           +   ++LK+    T E  + ALI  SAND + A GE ++GSE  F  +M+ +AK++G  N
Sbjct: 133 AAVAIHLKKGDKITVEALLNALIIMSANDAAVALGEAVAGSEANFVKMMNKRAKELGAIN 192

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYF----------------SIRKF 217
           T + N +GLH  +  +TA D  ++   + K   +++                    I   
Sbjct: 193 THFANPNGLHLSDHYSTAYDLYLIFKEVAK-HNEFFNIAGRSSSRIEYLGSKGEQKIYDM 251

Query: 218 RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVMGMPTSQER 276
              N+ I     L ++++ I G KTG T  +G  ++   +    +  ++VV+   T    
Sbjct: 252 ASTNQYIAGTYTLPSQVYMI-GGKTGTTTQAGSCLILLTKNKDGEEFISVVLKGVTKSAL 310

Query: 277 DQKALELIT 285
                ++++
Sbjct: 311 YHTMTDILS 319


>gi|333026656|ref|ZP_08454720.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces sp.
           Tu6071]
 gi|332746508|gb|EGJ76949.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces sp.
           Tu6071]
          Length = 496

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 57/299 (19%), Positives = 98/299 (32%), Gaps = 47/299 (15%)

Query: 32  GKILFLSIIMISMASELHAKPKY----SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTL 86
           G  L L    ++  +     PK     S +V D    ++   +       PAS  KM+  
Sbjct: 44  GARLALPGTQVAPGAGAPKLPKKLTARSWVVADAESGEILAARNPHWKLAPASTLKMLFA 103

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-LYLKEKTYFTTEQGILALITRSANDVST 145
             +       K+H   Q+ +         S  + +KE   ++     L +  RS ND   
Sbjct: 104 DTLLPKFSKDKVH---QVTLKDLDGIGEGSSLVGIKEDLPYSVHDLWLGVFLRSGNDAVH 160

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
                 +G   +    M  +A ++   +T      G   K Q+++A D  +      KN 
Sbjct: 161 VLSSMNNG-VAQTVRDMQARAHELQANDTHVVTPDGYDAKGQVSSAYDLTLFARDGLKN- 218

Query: 206 PQYYKYFSIRKFRYRN----------------------------RIITNHNKLL------ 231
           P + +Y S  + ++                                I N N+LL      
Sbjct: 219 PDFREYCSTAEAQFPGEFAKKKKDKDKKKATDGQAGPEQRPREHFGIQNTNRLLTGTYDL 278

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM--GMPTSQERDQKALELITSFL 288
                I G+K G T N+G       +  D  ++  VM      SQ   ++A  L+    
Sbjct: 279 KPYQGIAGVKNGNTTNAGATYTAYAQRGDRKLLVTVMHPDYDESQAVYREAARLLDWGF 337


>gi|289759031|ref|ZP_06518409.1| LOW QUALITY PROTEIN: D-alanyl-D-alanine carboxypeptidase dacB2
           [Mycobacterium tuberculosis T85]
 gi|289714595|gb|EFD78607.1| LOW QUALITY PROTEIN: D-alanyl-D-alanine carboxypeptidase dacB2
           [Mycobacterium tuberculosis T85]
          Length = 240

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 86/232 (37%), Gaps = 19/232 (8%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           P  PAS  K++   +  + L      LN+ +           + + +K    +T  Q + 
Sbjct: 13  PIRPASTIKVLLALVALDELD-----LNSTVVADVADTQAECNCVGVKPGRSYTARQLLD 67

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI--TTA 191
            L+  S ND +      + G +      M+ KA  +G  +T     SGL        +TA
Sbjct: 68  GLLLVSGNDAANTLAHMLGGQDVT-VAKMNAKAATLGATSTHATTPSGLDGPGGSGASTA 126

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKMHNIDGIKTGYTRN 247
            D  ++      N P + +  +     +      ++I N ++LL +     G KTGYT  
Sbjct: 127 HDLVVIFRAAMAN-PVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNA 185

Query: 248 SGFNIVTSLRYKDDPIVAVVM------GMPTSQERDQKALELITSFLEKKTL 293
           +    V +       +V  +M      G PT  ++     +   +   + ++
Sbjct: 186 ARKTFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASV 237


>gi|302380445|ref|ZP_07268913.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311756|gb|EFK93769.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
           ACS-171-V-Col3]
          Length = 289

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 25/225 (11%)

Query: 65  QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYL 120
           ++     D+  YPASLTKMMT+Y     ++      + + P+ K +      QN S    
Sbjct: 50  EIFSKNPDKKVYPASLTKMMTVYTALGKIED----FDKKAPIDKKSYQKLVKQNASMAGF 105

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
                 T E  +   +  SA + + +    +SGS++KF  LM+  AK +G+ NT +KN+ 
Sbjct: 106 YGNEPTTFEDLLYGTMLASAGECADSLAINVSGSKEKFVDLMNENAKNMGLNNTNFKNSE 165

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR-------YRNRIITNHNKLLNK 233
           G+ + +  ++A+D A L     KN  ++YK F+  K+         +   I +   +L +
Sbjct: 166 GMDEDDHYSSAKDMAFLLKNSLKN-EKFYKIFTTDKYTSTKTLDHPKGIEIEST--VLGR 222

Query: 234 MHN-------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           +         I G K+G T  +G  + T     +   + +VMG+ 
Sbjct: 223 LKEYEQDGFKIIGGKSGTTEKAGLCLATLSEKNNKKYIIIVMGVD 267


>gi|303234621|ref|ZP_07321255.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
           BVS033A4]
 gi|302494284|gb|EFL54056.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
           BVS033A4]
          Length = 289

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 25/225 (11%)

Query: 65  QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYL 120
           ++     D+  YPASLTKMMT+Y     ++      + + P+ K +      QN S    
Sbjct: 50  EIFSKNPDKKVYPASLTKMMTVYTALGKIED----FDKKAPIDKKSYQKLVKQNASMAGF 105

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
                 T E  +   +  SA + + +    +SGS++KF  LM+  AK +G+ NT +KN+ 
Sbjct: 106 YGNEPTTFEDLLYGTMLASAGECADSLAINVSGSKEKFVDLMNENAKNMGLNNTNFKNSE 165

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR-------YRNRIITNHNKLLNK 233
           G+ + +  ++A+D A L     KN  ++YK F+  K+         +   I +   +L +
Sbjct: 166 GMDEDDHYSSAKDMAFLLKNSLKN-EKFYKIFTTDKYTSTKTLDHPKGIEIEST--VLGR 222

Query: 234 MHN-------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           +         I G K+G T  +G  + T     +   + +VMG+ 
Sbjct: 223 LKEYEQDGFKIIGGKSGTTEKAGLCLATLSEKNNKKYIIIVMGVD 267


>gi|221196175|ref|ZP_03569222.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           multivorans CGD2M]
 gi|221202849|ref|ZP_03575868.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           multivorans CGD2]
 gi|221176783|gb|EEE09211.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           multivorans CGD2]
 gi|221182729|gb|EEE15129.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
           multivorans CGD2M]
          Length = 364

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 97/236 (41%), Gaps = 13/236 (5%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++ V+DV+       +     R  AS++K+MT  +  +  +     L  ++  +     +
Sbjct: 126 AAYVLDVDSGTPLLARNARTVRPIASISKLMTAVVARDADRPLNGVL--RVTANDRDTIK 183

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S+  L+  +  +        +  S N  + A      G    F   M+ +A+++GM+
Sbjct: 184 FTGSR--LQVGSELSRRDMFHIALMSSENRAAAALSRDYPGGRAAFVKAMNREARRLGMR 241

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR----IITNHN 228
           +T ++  +GL   + ++TA D A L     ++ P    + + R    R      +  N +
Sbjct: 242 HTHFREPTGLS-PHNVSTAEDLARLVDAAAQD-PLIRYFSTDRSTTVRPGDGELLYVNSD 299

Query: 229 KLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            L+  +   I   KTG+   SG  +V  +R K      V++G PT       A+ +
Sbjct: 300 PLVRYRRLPIRLQKTGFINESGHGVVMRMRVKGRRTTVVLLGAPTRAGVSSDAIRI 355


>gi|229105624|ref|ZP_04236258.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
 gi|228677894|gb|EEL32137.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
          Length = 301

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 65/284 (22%), Positives = 125/284 (44%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A         +P  +    I ID +  ++   K +DE
Sbjct: 23  MKRTIVMIVMIATLFTGMIFFSYAQRHQTVRGDQPSITGQYGITIDADTGEILYGKREDE 82

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      N +I V++ A        K+ L+       ++ 
Sbjct: 83  RSYPASIAKMMTTLLLLENVKE-----NEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 137

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ +S +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 138 LKLMLIISADPISESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSP 197

Query: 192 RDQAILGILLRKNFPQYYKYF----SIRKFRYRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D AI+     K +P   +Y     +      R+  I N+ +  L       G K+G + 
Sbjct: 198 YDIAIITKEALK-YPIVLQYMNSVHTTLHTSERSPKIANYGREELYDDPYAIGSKSGLSA 256

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T  +      ++     ++
Sbjct: 257 LGKYTVVTVDEKDGKRVINVVL-SSTRAQLYPDTKKMAHYAFKQ 299


>gi|282865542|ref|ZP_06274593.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           sp. ACTE]
 gi|282559586|gb|EFB65137.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           sp. ACTE]
          Length = 905

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 68/264 (25%), Positives = 120/264 (45%), Gaps = 23/264 (8%)

Query: 64  NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLY 119
             +  + +++P   AS+ K+MT Y+I +           QI V +     AA  + S   
Sbjct: 568 GAIGSYGKEKPAPIASMAKVMTAYVILQGHPITGDQKGEQIEVDEQAGKEAAITDESTAA 627

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           +++   FT  Q +  L+  S N+V+     + +G+EK F   M+  AK +GM NT Y + 
Sbjct: 628 IEKGDKFTEYQMLQMLMIPSGNNVARLLARWDAGTEKAFIEKMNAAAKDLGMTNTTYTDP 687

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-RIITNHNKLLNKMHNID 238
           SGL      T A DQ  LG  + +N   + +   + +        I N+N +L +   ++
Sbjct: 688 SGLKASTMSTPA-DQITLGKAVMRN-DVFREVVDMPQADIPGVGRIYNNNYILLE-DGVN 744

Query: 239 GIKTGYTRNSGFNIVTSLR----YKDDPIVAVVMGMPTSQERDQKALELITSFLEKK--- 291
           GIKTG +  +G N++ +       K   I+  VMG             ++ + LE+    
Sbjct: 745 GIKTGSSTPAGGNLLWTANTVVDGKPRRIIGAVMGAT--------VEGILEAKLERARQN 796

Query: 292 TLKHQQTHRKDNLSSTSLKKSLMI 315
           +LK  +  +K   S+T +KK  ++
Sbjct: 797 SLKLIKAAQKGVDSATVVKKGQVV 820


>gi|229062677|ref|ZP_04199986.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
 gi|228716647|gb|EEL68344.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
          Length = 290

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 127/284 (44%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A         +P  +    + ID +  ++   K +DE
Sbjct: 12  MKRTIIMIVMIATLFTGMIFFSYAHRQQVVRADQPNITGQYGMTIDADTGKILYGKREDE 71

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP--SKLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      + +I V++ A       +K+ L+       ++ 
Sbjct: 72  RSYPASIAKMMTTLLLLENVKE-----DEEITVTENAIKTESQSAKIKLRAGEKLKRDEA 126

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS++KF  +M+ +AK+IG ++  +KNASG        + 
Sbjct: 127 LKLMLIISADPIAESIAEHIAGSKEKFVKMMNARAKEIGTKHATFKNASGADALGNKVSP 186

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D AI+     K +P    Y +  +       R+  I N+ +  L       G K+G + 
Sbjct: 187 YDIAIITKEALK-YPIVLDYMNSTRTTLHTSERSPKIANYGREELYDDPYAIGSKSGLSA 245

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T  +      ++     ++
Sbjct: 246 LGKYTVVTVDEKDGKRVINVVL-SSTRTQLYPDTKKMANYAFQQ 288


>gi|302553699|ref|ZP_07306041.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces viridochromogenes
           DSM 40736]
 gi|302471317|gb|EFL34410.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces viridochromogenes
           DSM 40736]
          Length = 436

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 57/275 (20%), Positives = 96/275 (34%), Gaps = 31/275 (11%)

Query: 42  ISMASELHAKPK----YSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSK 96
           +++AS +   PK     S IV D     +        R  PAS  KM+    +       
Sbjct: 70  VNLASGVPVLPKDVSARSWIVADAETGDVLAAHNAHWRLAPASTLKMLFADTLLPKFPRT 129

Query: 97  KLHLNTQIPVSKTAATQNPSKL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
           + H   ++  S  A     S +  +KE   +T     L +  RS ND          G  
Sbjct: 130 EKH---KVVPSDLAGIGAGSSMVGIKEDETYTVHDLWLGVFLRSGNDAVHVLSAMNQG-V 185

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI--LLRKNFPQYYKYFS 213
           +     M+  A+++   +T   +  G   + Q+++A D  +     L +K+F +Y    S
Sbjct: 186 ENTVKEMNQHAEELQALDTHVVSPDGYDAEGQVSSAYDLTLFARSGLQKKDFREYCSTVS 245

Query: 214 IR-----------KFRYRNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSL 256
            +           K    +  I N N+LL           I G+K G T N+G       
Sbjct: 246 AKFPGQTKKGKKGKTVRESFEIQNTNRLLAGDADLPVYQGIAGVKNGNTTNAGATFTGVA 305

Query: 257 RYKDDPIVAVVMG--MPTSQERDQKALELITSFLE 289
                 ++  VM    P   E  ++   L     +
Sbjct: 306 ERDGKVLLVTVMNPEKPEHNEVYKETARLFDWGFK 340


>gi|229099467|ref|ZP_04230396.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
 gi|229118482|ref|ZP_04247836.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
 gi|228665052|gb|EEL20540.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
 gi|228683963|gb|EEL37912.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
          Length = 301

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 65/284 (22%), Positives = 125/284 (44%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A         +P  +    I ID +  ++   K +DE
Sbjct: 23  MKRTIVMIVMIATLFTGMIFFSYAQRQQTVRVDQPSITGQYGITIDADTGEILYGKREDE 82

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      N +I V++ A        K+ L+       ++ 
Sbjct: 83  RSYPASIAKMMTTLLLLENVKE-----NEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 137

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ +S +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 138 LKLMLIISADPISESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSP 197

Query: 192 RDQAILGILLRKNFPQYYKYF----SIRKFRYRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D AI+     K +P   +Y     +      R+  I N+ +  L       G K+G + 
Sbjct: 198 YDIAIITKEALK-YPIVLQYMNSVNTTLHTSERSPKIANYGREELYDDPYAIGSKSGLSA 256

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T  +      ++     ++
Sbjct: 257 LGKYTVVTVDEKDGKRVINVVL-SSTRAQLYPDTKKMAHYAFKQ 299


>gi|229076391|ref|ZP_04209356.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18]
 gi|228706826|gb|EEL59034.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18]
          Length = 301

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 65/284 (22%), Positives = 125/284 (44%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A         +P  +    I ID +  ++   K +DE
Sbjct: 23  MKRTIVMIVMIATLFTGMIFFSYAQRHQTVRGDQPSITGQYGITIDADTGEILYGKREDE 82

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      N +I V++ A        K+ L+       ++ 
Sbjct: 83  RSYPASIAKMMTTLLLLENVKE-----NEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 137

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ +S +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 138 LKLMLIISADPISESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSP 197

Query: 192 RDQAILGILLRKNFPQYYKYF----SIRKFRYRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D AI+     K +P   +Y     +      R+  I N+ +  L       G K+G + 
Sbjct: 198 YDIAIITKEALK-YPIVLQYMNSVNTTLHTSERSPKIANYGREELYDDPYAIGSKSGLSA 256

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T  +      ++     ++
Sbjct: 257 LGKYTVVTVDEKDGKRVINVVL-SSTRAQLYPDTKKMAHYAFKQ 299


>gi|311696252|gb|ADP99125.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [marine
           bacterium HP15]
          Length = 271

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 105/267 (39%), Gaps = 21/267 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT---AA 111
           +++ +  +   + G   D     AS+TK+MT  ++ E  +     L+  +   +    AA
Sbjct: 3   AAVAVAGDNKLIFGKNADRSVPIASVTKVMTALVVLESGEP----LDEWLTFHERHTPAA 58

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S++ +   +    +  +   +  S N  +        G    F   M+ KA  +GM
Sbjct: 59  ANAYSRIRID--SEMRRKDVLRIALMSSENFAAYTLARNHPGGFDAFIEAMNAKAAALGM 116

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR--YRNRIIT---- 225
             T + + +GL  +N ++TA D   L      ++P+  +Y +   FR  +R    +    
Sbjct: 117 TGTRFVDPTGLSSEN-LSTAADLVKLVNAA-ADYPEIREYSTTGYFRGQFRQPRYSLSFG 174

Query: 226 NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV---MGMPTSQERDQKAL 281
           N N L+++    +   KTGY   +G  +V   +     +V V+   +G  +      +  
Sbjct: 175 NTNALVHRDSWGVALSKTGYLSEAGRCLVMISKMNGKEVVTVLLDSLGTRSPMGDAGRIK 234

Query: 282 ELITSFLEKKTLKHQQTHRKDNLSSTS 308
             + +          + + ++  +S +
Sbjct: 235 RWLDTGARGSVAAAARRYEQEKNASYA 261


>gi|166031844|ref|ZP_02234673.1| hypothetical protein DORFOR_01545 [Dorea formicigenerans ATCC
           27755]
 gi|166028297|gb|EDR47054.1| hypothetical protein DORFOR_01545 [Dorea formicigenerans ATCC
           27755]
          Length = 367

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 100/237 (42%), Gaps = 24/237 (10%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEK 123
            +   +  YPAS TK++T  +  E       +L+  + V+  A +     +     +K  
Sbjct: 134 AYNIHKKIYPASTTKILTALVALE-----NGNLSDTVTVADEADSGKFAADEQTCGIKAG 188

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
              T E  +  L+  S ND + A  + I+GS +KFA +M+ +AKK+   N+ + N SGLH
Sbjct: 189 DQLTLEDLLNGLLLYSGNDNAVAIADHIAGSTEKFAEMMNAEAKKLMATNSHFVNPSGLH 248

Query: 184 DKNQITTARDQAILGILLRK--------NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
           D N  TTA D  ++     K        N   Y  + +      R+      N       
Sbjct: 249 DDNHYTTAYDLYLIFNECIKHDDFVKIINSSSYTAHITGADGTKRDVKWEPTNYYAKGEA 308

Query: 236 ------NIDGIKTGYTRNSGFNIVTSLRY-KDDPIVAVVMGMPTSQERDQKALELIT 285
                  I G KTG T+ +G  ++   +    +P ++++MG  +     Q    +++
Sbjct: 309 TPPDNVTIIGGKTGTTKGAGNCLILLTKDSSGNPYISIIMGAGSKPLLYQDMTSMLS 365


>gi|317490469|ref|ZP_07948950.1| D-alanyl-D-alanine carboxypeptidase [Eggerthella sp. 1_3_56FAA]
 gi|325831447|ref|ZP_08164701.1| serine-type D-Ala-D-Ala carboxypeptidase [Eggerthella sp. HGA1]
 gi|316910407|gb|EFV32035.1| D-alanyl-D-alanine carboxypeptidase [Eggerthella sp. 1_3_56FAA]
 gi|325486701|gb|EGC89149.1| serine-type D-Ala-D-Ala carboxypeptidase [Eggerthella sp. HGA1]
          Length = 467

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 57/273 (20%), Positives = 108/273 (39%), Gaps = 25/273 (9%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKL 98
           + ++    + A+    ++V+  +   +   +  + P   AS+TK+MT  +  + ++   L
Sbjct: 56  LAVAQCPSIDAEY---AMVMGAD-GTVYFERNAQSPTQIASITKIMTGVVALDAVEDGLL 111

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI------- 151
            L++ + VS  AA    S   L+E      +  + AL+  S ND + A  E I       
Sbjct: 112 SLDSPVTVSAAAAAVGESSAGLQEGDVMNLDAALKALLVPSGNDAAVAIAETIGALMEPG 171

Query: 152 -SGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----DKNQITTARDQAILGILLRKN-- 204
            S  E  F   M+ KA+++G  +T+Y N  GL       +  +TA D A +      N  
Sbjct: 172 TSDPEAVFVNAMNAKAQELGCTDTVYDNPHGLDFDAYAGDLHSTAADVAKVVQYAMTNDT 231

Query: 205 FPQYYKYFSIRKFRYR------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
           F       S      R      +  +   +   +      G+KTG T  +G +   +   
Sbjct: 232 FRAAVGGGSTTIQVTRADGAKADIYLETTDGFFDIYEYAIGVKTGVTLLAGPSFAGAANK 291

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
               + A+V+   +  +R + A  L     + +
Sbjct: 292 DGRELYAIVINSSSEAQRFKDAESLCEWVYQHE 324


>gi|291528982|emb|CBK94568.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale M104/1]
          Length = 301

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 67/262 (25%), Positives = 108/262 (41%), Gaps = 31/262 (11%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           AK    +   +++ +Q+   +   E  YPAS TK++T YII +        LN  + VS 
Sbjct: 49  AKTAEGAGAFNIDTHQVLYSQNLFEKLYPASTTKILTAYIILKNCD-----LNATVTVSH 103

Query: 109 TAATQN--PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
            AA      S   LKE    T +  +  L+  S ND + A  E+ SGS ++FA LM++ A
Sbjct: 104 DAANPGHSSSVCGLKEGDVITVQDLLYGLLLESGNDAAIALAEYCSGSVEEFAKLMNSTA 163

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
           K  G  N+ + N SGL D+N  TT  D  ++             + +I   +  +   TN
Sbjct: 164 KSFGATNSSFVNPSGLPDENHYTTIYDMYLIFSNAI----SLESFVAIISSQTHDAAYTN 219

Query: 227 HN--KLLNKMHNIDGIKTG-YTRNSG---------------FNIV-TSLRYKDDPIVAVV 267
                +     N  G  TG YT                     +V  S   K++ I+++V
Sbjct: 220 AQGAAVSKTFKNTCGYLTGAYTAPENVTVTGGKTGTTGEAGHCLVLLSQNAKNERIISIV 279

Query: 268 MGMPTSQERDQKALELITSFLE 289
                 ++      E+++ F  
Sbjct: 280 YKADGKKDLYSFMNEILSGFAN 301


>gi|291557828|emb|CBL34945.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum V10Sc8a]
          Length = 734

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 123/290 (42%), Gaps = 35/290 (12%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            E++A+   ++IV+  ++ ++   K       PA L K+M   I  E     K + N  +
Sbjct: 13  PEINAQ---AAIVVTQHEGRILLEKNARMKLSPAFLIKIMASIIALE-----KCNPNDTV 64

Query: 105 PVSKTAATQ-----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            VS +   Q       + + L+     +    I +++  SAND   A  EFI GS  KFA
Sbjct: 65  TVSDSVIKQISNWKGSASINLEAGEKISVLDLIYSMMLVSANDSLFALAEFICGSLDKFA 124

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M  KAK IG  +T    A G     Q + A D AI+      N   +    +  K+  
Sbjct: 125 AMMQEKAKSIGAADTTVTTADGRFTAEQYSNAYDLAIICRYCMTN-RMFRTIAATDKYTI 183

Query: 220 ------RNRIITNHNKLLN------KMHNIDGIKTGYTRNSGFNIVTS----LRYKDDPI 263
                  +R + N N L+N      +     GIK+GYT  S   +  S         + +
Sbjct: 184 PATNKNGSRDLQNTNLLINSGNRRYRYETAIGIKSGYTARSKSCLACSALPPANKFGEEV 243

Query: 264 VAVVMGMPTSQER---DQKALELIT-SFLEKKTLKHQQTHRKDNLSSTSL 309
           +A+++G   +++       A+ L+  +F   + L  ++  ++++ +  S+
Sbjct: 244 LAIILGAENTKQMKYVFYDAITLLDFTFNNYEALSGKKPEQQNSEAEKSI 293


>gi|242372443|ref|ZP_04818017.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus epidermidis
           M23864:W1]
 gi|242349865|gb|EES41466.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus epidermidis
           M23864:W1]
          Length = 393

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 65/282 (23%), Positives = 122/282 (43%), Gaps = 34/282 (12%)

Query: 64  NQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKL 118
            Q+   + +++   PASLTKMMT+Y+  + ++S KLH+N ++ ++   A      N S +
Sbjct: 58  GQILYSYHENKKVDPASLTKMMTMYLTLDAVKSGKLHMNDKVKITNQQAQLSRKSNLSSV 117

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            LK    +T ++ +      S+N  +   GE +S S   F   M+ +AK+  M +T Y +
Sbjct: 118 PLKAGQIYTVKEILSQTALASSNAAALILGEKVSKSTSTFTDQMNQQAKQFHMNHTHYTS 177

Query: 179 ASGLHD-----------KNQ---ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII 224
            +G              KNQ    +T++D  I+   + KN P+  K         + +  
Sbjct: 178 PTGADTHLLGPSAPEKYKNQGKTQSTSKDMNIMMYEMLKNHPEILKITKKTSETQKGQTF 237

Query: 225 TNHNKLLNK----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP--------- 271
            + N  L          DG+KTG T +SG+++  + +     +   ++ +          
Sbjct: 238 KSTNLSLKGQPKYYKGTDGLKTG-TSDSGYSLALTNKQHRLRLNETILDVSPYPSETAKL 296

Query: 272 TSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSL 313
           T  E     ++      E K +  +  H+ D  ++  +KK L
Sbjct: 297 TRNEIANDMMKYYRKQYEYKKVLSKGEHKIDG-TTYDVKKDL 337


>gi|118388940|ref|XP_001027563.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila]
 gi|89309333|gb|EAS07321.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila SB210]
          Length = 363

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 61/289 (21%), Positives = 111/289 (38%), Gaps = 54/289 (18%)

Query: 53  KYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT-QIPVSKTA 110
             +  + D    Q   G   +E R  ASLTKM TL +    ++  KL        VS+ A
Sbjct: 67  AKAWCIYDAKTGQYQRGHHSNEIREMASLTKMATLLVSLRLVERFKLDPTQLYFSVSENA 126

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE--------------------- 149
           A    +   L+E  +   +     L+  S ND +    E                     
Sbjct: 127 ANTRGTTSRLEENEWVLVKDLFYGLMLPSGNDSAVVLAENFGCLLYFDSIGQNKVFQEIH 186

Query: 150 --------FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
                   ++    K F   M++  ++  +++T + N  GL +K+  +T  D A L    
Sbjct: 187 SVDVTEDIYVRDYMKLFLKEMNSICEEFNLKSTKFNNPHGLVNKHNYSTCNDLARLTYFC 246

Query: 202 RKNFPQYYKYFSIRKFRY-------------RNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
            KN  ++ K  + + +R              R+ +  N NKLL++     G+KTG T  +
Sbjct: 247 LKN-EEFRKIVATKTYRAVVKYVQFDNKVIERSILWENTNKLLDR--GFKGVKTGITVAA 303

Query: 249 GFNIVT--SLRYKDDP-----IVAVVMGMPTSQERDQKALELITSFLEK 290
           G  + +  +    D       I+ +V+G    ++R Q  + L   ++++
Sbjct: 304 GACLSSWYTQTIDDYSKEECNIIIIVLGSVNQEQRFQDTIRLADWYVQR 352


>gi|300173926|ref|YP_003773092.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc gasicomitatum LMG
           18811]
 gi|299888305|emb|CBL92273.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc gasicomitatum LMG
           18811]
          Length = 420

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 137/309 (44%), Gaps = 42/309 (13%)

Query: 26  RNIQLMGKIL-FLSIIMISMASELHAKP------KYSSIVIDVNKNQMTGFKQDEPR-YP 77
           R+I+++G I+  L ++  ++++   AKP        S+IVID +  Q+   K  +     
Sbjct: 2   RHIKIIGAIVAMLFLMTTAVSANAIAKPLEIKQDVSSAIVIDASTGQILAVKNADKLGPI 61

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP---SKLYLKEKTYFTTEQGI 132
           AS +K++T Y + + + S K+  + ++ +SK A  + Q+    S L +K     T  +  
Sbjct: 62  ASQSKLLTAYAVLKAINSGKIKWSDKVTISKKADLSKQDSHLFSHLAVKAGDRLTVRELY 121

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD----KNQI 188
             +IT SAND + A  E+++      A  +   AK++ +  + + N++G  +    +N++
Sbjct: 122 NTMITLSANDAAFALAEYMTPKNMTTAKALQLWAKELKLTQSTWYNSAGQINQDAFENKV 181

Query: 189 TTARD----------QAILGILLRKNFPQYYKYFSIRKFRY---RNRIIT-------NHN 228
             A D           AI+   + +  P   +  +     Y    N I+        N  
Sbjct: 182 KNAPDNAVNLASPKHVAIIAREIVQLDPNIRELATNTHVSYHLRNNYIVNEPTEMTKNWP 241

Query: 229 KLLNKMH-NIDGIKTGYTRNSGFNIVTSLRY-KDDPIVAVVMGMPT---SQERDQKALEL 283
            L+N  H  I+G+KTG T  SG      ++       + VV G  +     +R QK L +
Sbjct: 242 YLINPNHLTIEGLKTGSTPESGAAFTGIIKDSSGHEFITVVNGAASYMDEVQRYQKTLNI 301

Query: 284 ITSFLEKKT 292
           +   LE + 
Sbjct: 302 VNEVLEAQK 310


>gi|269123185|ref|YP_003305762.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Streptobacillus moniliformis DSM 12112]
 gi|268314511|gb|ACZ00885.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Streptobacillus moniliformis DSM 12112]
          Length = 281

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 68/236 (28%), Positives = 114/236 (48%), Gaps = 8/236 (3%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119
           D   N+   + +   R  ASLTK+MT  IIF+ +Q  K  LNT++ VSK A+   P  + 
Sbjct: 45  DDENNKYYSYNETSTRPLASLTKLMTALIIFDDIQEGKYELNTEVVVSKEASKV-PYGVV 103

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKN 178
           +KE   +T E+ +  L+  S+N  +     F S G+  +F   M+ KAK +G+++  ++ 
Sbjct: 104 IKENRIYTIEELLHLLLINSSNSSAYQLALFSSFGNVDEFVDKMNKKAKSLGLRSLRFRT 163

Query: 179 ASGLH--DKNQIT---TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
             GL   D N+      ARD  +L +    N                   I + N L+ +
Sbjct: 164 PHGLPPVDTNKAMDIGNARDIYLLALNALNNEKLIEISKKYSYETSDGIKIKSTNTLV-Q 222

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           +  + G+KTG+ R +G+NIV  +   D  I+ V++G  T   R++  L+ +    E
Sbjct: 223 LDEVLGLKTGFHRRAGYNIVYLIDNGDKKIIQVILGANTISSREKLGLKTLELMKE 278


>gi|168186694|ref|ZP_02621329.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum C str.
           Eklund]
 gi|169295300|gb|EDS77433.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum C str.
           Eklund]
          Length = 443

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 60/276 (21%), Positives = 109/276 (39%), Gaps = 42/276 (15%)

Query: 55  SSIVIDVNKNQMTGFKQ--DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S+IVID    ++   K     P YPAS        ++   L ++       +  ++ +  
Sbjct: 36  SAIVIDAKTGEIIYAKDVDASPMYPAST-----TKLLTALLLAENKKPTDMLTYTEGSLK 90

Query: 113 QNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
           Q    L       LK     + +  +  L+  SAND++    + + G+ + FA +M++K 
Sbjct: 91  QPEYTLRSFLKGKLKVGDTMSADDAMKGLLLHSANDIAYMIADNVGGNAENFAKMMNDKV 150

Query: 167 KKIGMQNTIYKNASGLHD--KNQITTARDQAILGILLRKN-FPQYYKYFSIRKFRYRNRI 223
            ++G++NT +   +GL +   N  T+A D +I+G     N + +        K    N I
Sbjct: 151 SQLGLKNTHFVTPNGLDNGISNHYTSAYDLSIIGKAAYSNEWVRNTMNLKQSKLELSNGI 210

Query: 224 I---TNHNKLLNKMHN--------------------IDGIKTGYTRNSGFNIVTSLRYKD 260
           +   TN NKLL    +                      G KTGYT  +G  +V      +
Sbjct: 211 LGYPTNRNKLLGTTLDSNFLSKLGNNSKETPVSDAICIGGKTGYTTKAGRCLVAMFNKDN 270

Query: 261 DPIVAVVMGMPTSQER---DQKALELITSFLEKKTL 293
             ++ VVM     +      +   ++I     +K +
Sbjct: 271 RVLIGVVMKSAYDKNDTYVFKDMSKIINFAYSQKQV 306


>gi|167750846|ref|ZP_02422973.1| hypothetical protein EUBSIR_01829 [Eubacterium siraeum DSM 15702]
 gi|167656281|gb|EDS00411.1| hypothetical protein EUBSIR_01829 [Eubacterium siraeum DSM 15702]
          Length = 734

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 123/290 (42%), Gaps = 35/290 (12%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            E++A+   ++IV+  ++ ++   K       PA L K+M   I  E     K + N  +
Sbjct: 13  PEINAQ---AAIVVTQHEGRILLEKNARMKLSPAFLIKIMASIIALE-----KCNPNDTV 64

Query: 105 PVSKTAATQ-----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            VS +   Q       + + L+     +    I +++  SAND   A  EFI GS  KFA
Sbjct: 65  TVSDSVIKQISNWKGSASINLEAGEKISVLDLIYSMMLVSANDSLFALAEFICGSLDKFA 124

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
            +M  KAK IG  +T    A G     Q + A D AI+      N   +    +  K+  
Sbjct: 125 AMMQEKAKSIGAADTTVTTADGRFTAEQYSNAYDLAIICRYCMTN-RMFRTIAATDKYTI 183

Query: 220 ------RNRIITNHNKLLN------KMHNIDGIKTGYTRNSGFNIVTS----LRYKDDPI 263
                  +R + N N L+N      +     GIK+GYT  S   +  S         + +
Sbjct: 184 PATNKNGSRDLQNTNLLINSGNRRYRYETAIGIKSGYTARSKSCLACSALPPANKFGEEV 243

Query: 264 VAVVMGMPTSQER---DQKALELIT-SFLEKKTLKHQQTHRKDNLSSTSL 309
           +A+++G   +++       A+ L+  +F   + L  ++  ++++ +  S+
Sbjct: 244 LAIILGAENTKQMKYVFYDAITLLDFTFNNYEALSGKKPEQQNSEAEKSI 293


>gi|290958013|ref|YP_003489195.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei 87.22]
 gi|260647539|emb|CBG70644.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei
           87.22]
          Length = 492

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 100/278 (35%), Gaps = 37/278 (13%)

Query: 42  ISMASELHAKPK----YSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSK 96
            ++ S+    PK     S IV D     +        R  PAS  KM+    +       
Sbjct: 133 AALGSDAPVLPKGISARSWIVADAESGDVLAAHNAHWRLAPASTLKMLFADTLL-----P 187

Query: 97  KLHLNTQ---IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           K + + +   +P          S + +KE   +T     L +  RS ND        ++G
Sbjct: 188 KFNKDDEHKVLPADLAGIGAGSSMVGIKEDEKYTVHDLWLGVFLRSGNDAVHVL-SAMNG 246

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI--LLRKNFPQYYKY 211
             K+    M+  A+++   +T   +  G   K Q+++A D  +     L +K+F +Y   
Sbjct: 247 GVKQTVADMNEHAEELQALDTHAVSPDGYDAKGQVSSAYDLTLFARSGLQKKDFREYCST 306

Query: 212 F------SIRKFRYRNRI-----ITNHNKL------LNKMHNIDGIKTGYTRNSGFNIVT 254
                    +K +   +      I N N+L      L+    I G+K G T N+G     
Sbjct: 307 VRAKFPGETKKGKNGKKSRSSFEIQNTNRLLTGDSGLDSYQGIAGVKNGNTTNAGATFTG 366

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQ---KALELITSFLE 289
                   ++  VM  P   E +Q   +   L+    +
Sbjct: 367 VAERDGRVLLVTVMH-PEKNEHNQVYKETASLLDWGFK 403


>gi|331699048|ref|YP_004335287.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953737|gb|AEA27434.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudonocardia
           dioxanivorans CB1190]
          Length = 411

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 98/264 (37%), Gaps = 19/264 (7%)

Query: 37  LSIIMISMASELHAKPK----YSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFE 91
           L    +++     A P        ++ D++   +   +    R  PAS      L ++  
Sbjct: 63  LGTCDLALPPGAPALPAGIDAAGWVLADLDSGVVLAARDPHGRQRPAST-----LKLLTT 117

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            +   +L L+  +    +    + S+  +     +T +Q +  L+  S ND + A    +
Sbjct: 118 LVVLDRLPLDQTVVGDTSDVQVDGSRAGIGPGGSYTVQQLLTGLLLNSGNDTAHALARTL 177

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            G   +   LM  +A  +G  +T     SGL      T+A D A+      +N P + + 
Sbjct: 178 GG-VPRTLDLMQQRAAAMGALDTRPATPSGLDGPGMSTSAYDLALFLRAALRN-PTFAEL 235

Query: 212 FSIRKFRYRNR------IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
             +R   +         +++N + LL+      G KTG+T  +    V + +     +V 
Sbjct: 236 TQLRLVAFPGFGDRPGFMLSNDDPLLSSYDGALGGKTGFTDAARHTFVGAAQRDGHRLVV 295

Query: 266 VVMGMPTSQER-DQKALELITSFL 288
            ++       R   +A  L+    
Sbjct: 296 ALVRGEQHPVRMVAQASALLDYGF 319


>gi|169825187|ref|YP_001692798.1| D-alanyl-D-alanine carboxypeptidase [Finegoldia magna ATCC 29328]
 gi|167831992|dbj|BAG08908.1| D-alanyl-D-alanine carboxypeptidase [Finegoldia magna ATCC 29328]
          Length = 289

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 25/225 (11%)

Query: 65  QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYL 120
           ++     D+  YPASLTKMMT+Y     ++      + + P+ K +      QN S    
Sbjct: 50  EIFSKNPDKKVYPASLTKMMTVYTALGKIED----FDKKAPIDKKSYQKLVKQNASMAGF 105

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
                 T E  +   +  SA + + +    +SGS++KF  LM+  AK +G+ NT +KN+ 
Sbjct: 106 YGNEPTTFEDLLYGTMLASAGECADSLAINVSGSKEKFVDLMNENAKNMGLNNTNFKNSE 165

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR-------YRNRIITNHNKLLNK 233
           G+ + +  ++A+D A L     KN  ++YK F+  K+         +   I +   +L++
Sbjct: 166 GMDEDDHYSSAKDMAFLLKNSLKN-QKFYKIFTTDKYTSTKTFDHPKGIEIEST--VLSR 222

Query: 234 MHN-------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           + +       I G K+G T  +G    T         + +VMG+ 
Sbjct: 223 LKDYEQDGFKIIGGKSGTTEKAGLCWATLSEKNGKKYIIIVMGVD 267


>gi|154502813|ref|ZP_02039873.1| hypothetical protein RUMGNA_00627 [Ruminococcus gnavus ATCC 29149]
 gi|153796696|gb|EDN79116.1| hypothetical protein RUMGNA_00627 [Ruminococcus gnavus ATCC 29149]
          Length = 313

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 114/286 (39%), Gaps = 52/286 (18%)

Query: 25  QRNIQLMGKILFLSIIMIS---MASELHAK------------------PKYSSIVIDVNK 63
           +RN++  G   FL  I++     A E+ A+                  P  S I+ ++N 
Sbjct: 21  KRNVR--GICAFLCTILLGCLIPAGEVQAQRALDVARERGYQLEERYQPAGS-IITEINT 77

Query: 64  NQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKL 118
            Q+   +  +    PAS+TK+MT+ + +E +++  L L +   V++     A     S  
Sbjct: 78  GQILWQENAQKQWPPASMTKLMTILLAYEEIKAGNLELESTAEVNERYTDIAGRYALSNN 137

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            ++    +T  + +  +I  S+   +    + +     +F   M+ KA+++GM NT Y N
Sbjct: 138 KMQPGASYTVAELMDLIIVPSSAAATYMLADMVESDPDRFVERMNQKAQELGMVNTKYFN 197

Query: 179 ASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI- 223
             G+               D + ITT  D A+L   L K +P    +    +   +    
Sbjct: 198 CVGVTNNLLQPYHPVSQPLDGDNITTPEDYAMLCTYLIKTYPDILNHTKYPQITVKEGTP 257

Query: 224 ----ITNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
                T++   L      +   DG+KTG +  +GF +    +    
Sbjct: 258 YEEHFTSYQISLEGAKYGLEGTDGLKTGSSDTAGFKLFVHCKTGGH 303


>gi|291530580|emb|CBK96165.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum 70/3]
          Length = 734

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 124/290 (42%), Gaps = 35/290 (12%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            E++A+   ++IV+  ++ ++   K       PA L K+M   I  E     K + N  +
Sbjct: 13  PEINAQ---AAIVVTQHEGRILLEKNARMKLSPAFLIKIMASIIALE-----KCNPNDTV 64

Query: 105 PVSKTAATQ-----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
            VS +   Q       + + L+     +    I +++  SAND   A  EFI GS  KFA
Sbjct: 65  TVSDSVIKQISNWKGSASINLEAGEKISVLDLIYSMMLVSANDSLFALAEFICGSLDKFA 124

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
           ++M  KAK IG  +T    A G     Q + A D AI+      N   +    +  K+  
Sbjct: 125 VMMQEKAKSIGAADTTITTADGRFTAEQYSNAYDLAIICRYCMTN-RMFRTIAATDKYTI 183

Query: 220 ------RNRIITNHNKLLN------KMHNIDGIKTGYTRNSGFNIVTS----LRYKDDPI 263
                  +R + N N L+N      +     GIK+GYT  S   +  S         + +
Sbjct: 184 PATNKNGSRDLQNTNLLINSGNRRYRYETAIGIKSGYTARSKSCLACSALPPANKFGEEV 243

Query: 264 VAVVMGMPTSQER---DQKALELIT-SFLEKKTLKHQQTHRKDNLSSTSL 309
           +A+++G   +++       A+ L+  +F   + L  ++  ++++ +  ++
Sbjct: 244 LAIILGAENTKQMKYVFYDAITLLDFTFNNYEALSGKKPEQQNSEAGKTI 293


>gi|161520620|ref|YP_001584047.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           multivorans ATCC 17616]
 gi|189353194|ref|YP_001948821.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans ATCC
           17616]
 gi|160344670|gb|ABX17755.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           multivorans ATCC 17616]
 gi|189337216|dbj|BAG46285.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans ATCC
           17616]
          Length = 364

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 97/236 (41%), Gaps = 13/236 (5%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++ V+DV+       +     R  AS++K+MT  +  +  +     L  ++  +     +
Sbjct: 126 AAYVLDVDSGTPLLARNARTVRPIASISKLMTAVVARDADRPLNGVL--RVTANDRDTIK 183

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S+  L+  +  +        +  S N  + A      G    F   M+ +A+++GM+
Sbjct: 184 FTGSR--LQVGSELSRRDMFHIALMSSENRAAAALSRDYPGGRAAFVKAMNREARRLGMR 241

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR----IITNHN 228
           +T ++  +GL   + ++TA D A L     ++ P    + + R    R      +  N +
Sbjct: 242 HTHFREPTGLS-PHNVSTAEDLARLVDAAAQD-PLIRYFSTDRSTTVRPGDGELLYVNSD 299

Query: 229 KLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            L+  +   I   KTG+   SG  +V  +R K      V++G PT       A+ +
Sbjct: 300 PLVRYRRLPIRLQKTGFINESGHGVVMRMRVKGRRTTVVLLGAPTRAGVSSDAITI 355


>gi|257791331|ref|YP_003181937.1| Serine-type D-Ala-D-Ala carboxypeptidase [Eggerthella lenta DSM
           2243]
 gi|257475228|gb|ACV55548.1| Serine-type D-Ala-D-Ala carboxypeptidase [Eggerthella lenta DSM
           2243]
          Length = 467

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 57/273 (20%), Positives = 108/273 (39%), Gaps = 25/273 (9%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKL 98
           + ++    + A+    ++V+  +   +   +  + P   AS+TK+MT  +  + ++   L
Sbjct: 56  LAVAQCPSIDAEY---AMVMGAD-GTVYFERNAQSPTQIASITKIMTGVVALDAVEDGLL 111

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI------- 151
            L++ + VS  AA    S   L+E      +  + AL+  S ND + A  E I       
Sbjct: 112 SLDSPVTVSAAAAAVGESSAGLQEGDVMNLDAALKALLVPSGNDAAVAIAETIGALMEPG 171

Query: 152 -SGSEKKFAILMSNKAKKIGMQNTIYKNASGLH----DKNQITTARDQAILGILLRKN-- 204
            S  E  F   M+ KA+++G  +T+Y N  GL       +  +TA D A +      N  
Sbjct: 172 TSDPEAVFVNAMNAKAQELGCTDTVYDNPHGLDFDAYAGDLHSTAADVAKVVQYAMTNDT 231

Query: 205 FPQYYKYFSIRKFRYR------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
           F       S      R      +  +   +   +      G+KTG T  +G +   +   
Sbjct: 232 FRAAVGGGSTTIQVTRADGAKADIYLETTDGFFDIYEYAIGVKTGVTLLAGPSFAGAANK 291

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKK 291
               + A+V+   +  +R + A  L     + +
Sbjct: 292 DGRELYAIVINSSSEAQRFKDAESLCEWVYQHE 324


>gi|149196127|ref|ZP_01873183.1| D-alanyl-D-alanine carboxypeptidase [Lentisphaera araneosa
           HTCC2155]
 gi|149140974|gb|EDM29371.1| D-alanyl-D-alanine carboxypeptidase [Lentisphaera araneosa
           HTCC2155]
          Length = 337

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 58/249 (23%), Positives = 111/249 (44%), Gaps = 18/249 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSK-KLHLNTQIPVSKTAAT 112
           + +V ++N+ +           P ASLTK +T+  +  +++   +  L  Q+ +SK++  
Sbjct: 87  AGLVFEMNQGKTLWSTNANKSVPVASLTKCLTVLTVLNHIKKNPEYSLLDQVLISKSSMK 146

Query: 113 QNPSKLYLK--EKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKI 169
            +    +L+   K   + E+ +++ + +SAND      E    G  K F  +M+ +A+++
Sbjct: 147 TSS-SSFLRKYPKDTISIEELLISAMVKSANDSCQLIAEHFGKGDPKVFIAMMNKQAQEL 205

Query: 170 GMQNTIYKNASGLH------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-----R 218
           GM  T   NA GL       + +  ++  D   L      ++P   K+ S R+       
Sbjct: 206 GMTQTRMSNAHGLPFNREKPELDNHSSMSDLLHLVRKSINDYPIILKWTSKREALLPVNS 265

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           ++   I N N LL  +  ++G KTG+T N+G+  + + R        V+ G P    RD 
Sbjct: 266 HKATKIGNTNPLL-AVKGVNGYKTGFTINAGWCQILTTRSNGKFYFLVITGCPNKNTRDV 324

Query: 279 KALELITSF 287
               L+   
Sbjct: 325 TMRALMNWA 333


>gi|229014198|ref|ZP_04171319.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
 gi|228747152|gb|EEL97034.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
          Length = 301

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 125/284 (44%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A         +P  +    I ID +  ++   K +DE
Sbjct: 23  MKRTIIMIVMIATLFTGMIFFSYAQRQQVVRADQPNITGQYGITIDADTGEILYGKREDE 82

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      + +I V++ A        K+ L+       ++ 
Sbjct: 83  RSYPASIGKMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 137

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 138 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSP 197

Query: 192 RDQAILGILLRKNFPQYYKYF----SIRKFRYRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D AI+     K +P   +Y     +      R+  I N+ +  L       G K+G + 
Sbjct: 198 YDIAIITKESLK-YPIVLEYMNSIHTTLHTSERSPKIANYGREELYDDPYAIGSKSGLSA 256

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T  +      ++     ++
Sbjct: 257 LGKYTVVTVDEKDGKRVINVVL-SSTRTQLYPDTKKMAHYAFQQ 299


>gi|328883123|emb|CCA56362.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces venezuelae ATCC
           10712]
          Length = 781

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 101/213 (47%), Gaps = 13/213 (6%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN----PSKLYLKEKTYFTT 128
           +P   AS+TK MT Y+I      K      +I + + AA Q      S   +++   +T 
Sbjct: 452 KPAPIASVTKTMTAYVILRDHPLKGKQQGPEIEIDQKAADQGKAEHESTAAVQKGQTYTE 511

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
           ++ +  L+  SAN+V+     + +GSE  F   M+  AK++GM  + Y + SGL D   +
Sbjct: 512 KELLELLMIPSANNVARLLARWDAGSEAAFVEKMNAAAKQLGMTQSTYTDPSGLLDS-TM 570

Query: 189 TTARDQAILGILLRKN--FPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           +T +DQ  L   + +   F +     ++       RI  N+N LL     + GIKTG + 
Sbjct: 571 STPQDQLKLAKAVMQYDVFREIVNMPNVTVDGIPGRIENNNNILLK--PGVSGIKTGSST 628

Query: 247 NSGFNIVTSLR----YKDDPIVAVVMGMPTSQE 275
            +G N++ +       ++  I+ +VMG   + E
Sbjct: 629 PAGGNLLWAANTVVDGQNRRILGIVMGAKDAAE 661


>gi|134094725|ref|YP_001099800.1| D-alanyl-D-alanine-endopeptidase [Herminiimonas arsenicoxydans]
 gi|133738628|emb|CAL61673.1| putative Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
           [Herminiimonas arsenicoxydans]
          Length = 274

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 92/235 (39%), Gaps = 13/235 (5%)

Query: 56  SIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ- 113
           +IVID    ++   K   +    ASLTK+MT  ++ +     +L ++  I ++       
Sbjct: 27  AIVIDEATGKILFEKNSSDIVPIASLTKLMTAMLVLDA----RLDMHEHIMITDDDVDTL 82

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S   +   +  T    +   +  S N  + A      G  + F +   NKA  + ++ 
Sbjct: 83  KFSSSRVPVGSMLTRNTLLELALMSSDNRAAHALARTYPGGIEHFRLAARNKAHALSLRR 142

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNRIITNHNK 229
           T  +  +GL      +TA D A    +    +P+  +  +            R   N NK
Sbjct: 143 TNIEEPTGLS-PYNTSTASDLAR-LAMAAARYPEIERITTSAGDLIDLGSSARHYHNTNK 200

Query: 230 LLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           L+  K   I   KTGYT+ +G  I+  +R      + V++    S  R   A+ L
Sbjct: 201 LVGDKNWTISLSKTGYTQEAGRCIIMRVRTAGRDAIMVLLNARASANRTADAVSL 255


>gi|210634508|ref|ZP_03298135.1| hypothetical protein COLSTE_02057 [Collinsella stercoris DSM 13279]
 gi|210158809|gb|EEA89780.1| hypothetical protein COLSTE_02057 [Collinsella stercoris DSM 13279]
          Length = 450

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 91/242 (37%), Gaps = 31/242 (12%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
            D+P   AS+TK+MT  +  E+       L+  + V   AAT   S L L E    T E 
Sbjct: 75  ADDPIKIASVTKVMTALVALEHCD-----LSDTVTVDHAAATVGESSLGLLEGDTLTMED 129

Query: 131 GILALITRSANDVSTA--------FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
            +  L+  S ND +TA                   F   M+ KAK++G  +T+++N  GL
Sbjct: 130 ALTGLMVMSGNDAATAIATTAGAQIDPTSDDPYAVFIEAMNEKAKELGCTDTVFENPHGL 189

Query: 183 H----DKNQITTARDQAILGILLRKN----FPQYYKYFSIR------KFRYRNRIITNHN 228
                  N  +T RD   +     +N            SI         R  N ++ N  
Sbjct: 190 DFDAWAGNLHSTTRDITKVFAAAMQNEDFRAIDNSDRTSIPVTSADGSARTVNLVVRNQ- 248

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK-DDPIVAVVMGMPTSQERDQKALELITSF 287
             ++      G KTG T  +G   V +        +   + G  T++ER    L L   +
Sbjct: 249 --IHGQDGNIGGKTGTTDEAGNCFVGAFTRDLGGEVYVAIFGAQTNEERFADTLTLANWY 306

Query: 288 LE 289
            +
Sbjct: 307 YD 308


>gi|238924099|ref|YP_002937615.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium rectale ATCC
           33656]
 gi|238875774|gb|ACR75481.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium rectale ATCC
           33656]
          Length = 301

 Score =  151 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 67/262 (25%), Positives = 108/262 (41%), Gaps = 31/262 (11%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           AK    +   +++ +Q+   +   E  YPAS TK++T YII +        LN  + VS 
Sbjct: 49  AKTAEGAGAFNIDTHQVLYSQNLFEKLYPASTTKILTAYIILKNCD-----LNATVTVSH 103

Query: 109 TAATQN--PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
            AA      S   LKE    T +  +  L+  S ND + A  E+ SGS ++FA LM++ A
Sbjct: 104 DAANPGHSSSVCGLKEGDVITVQDLLYGLLLESGNDAAIALAEYCSGSAEEFAKLMNSTA 163

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
           K  G  N+ + N SGL D+N  TT  D  ++             + +I   +  +   TN
Sbjct: 164 KSFGATNSNFVNPSGLPDENHYTTIYDMYLIFSNAI----SLESFVAIISSQTHDAAYTN 219

Query: 227 HN--KLLNKMHNIDGIKTG-YTRNSG---------------FNIV-TSLRYKDDPIVAVV 267
                +     N  G  TG YT                     +V  S   K++ I+++V
Sbjct: 220 AQGAAVSKTFKNTCGYLTGAYTAPENVTVTGGKTGTTGEAGHCLVLLSQNAKNERIISIV 279

Query: 268 MGMPTSQERDQKALELITSFLE 289
                 ++      E+++ F  
Sbjct: 280 YKADGKKDLYSFMNEILSGFAN 301


>gi|118161327|gb|ABK64011.1| putative carboxypeptidase [Janthinobacterium lividum]
          Length = 583

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 98/258 (37%), Gaps = 15/258 (5%)

Query: 32  GKILFLSIIMISMASELHAKPKYSS--IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYI 88
           GK +    ++   A+ + A P  +   +V D    ++   K  +   P AS+TK+MT  +
Sbjct: 317 GKPVVNGTMLAEAATGMLALPVSAKHMLVFDDASGKVLMAKDADAVVPIASITKLMTAMV 376

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSK-LYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + +      L  + Q+ + +     +  +   L +    +    +   +  S N  + A 
Sbjct: 377 VLDAG----LDPDEQLRIVRADGDASLQRHSLLADGVAVSRGALLQLALLPSENRAAAAL 432

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
                G    FA  +  K + +G+  T      G       +TA + A +     + +P 
Sbjct: 433 ARTYPGGNAAFAQALQAKIRHLGLVRTTLTEPVGSS-PANTSTASEVAKIVAAAAR-YPD 490

Query: 208 YYKYFSIRK----FRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
             +  S R+       + R + N N L+  K  +I   KTG +  +G  +   +R     
Sbjct: 491 IARITSHRQASVAVNGKTRTLHNTNPLVGGKGWDILLSKTGSSNEAGSCLTMRMRSGGKH 550

Query: 263 IVAVVMGMPTSQERDQKA 280
           +  V++    +Q R   A
Sbjct: 551 VTVVLLDADGAQRRSLDA 568


>gi|302536388|ref|ZP_07288730.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. C]
 gi|302445283|gb|EFL17099.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. C]
          Length = 487

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 91/268 (33%), Gaps = 26/268 (9%)

Query: 42  ISMASELHAK-PKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLH 99
           +  A  L A     S IV D    ++        R  PAS  KM+    +   L   ++H
Sbjct: 140 LPGAPALPANLSGRSWIVADAETGEVLAAHNAHWRLPPASTLKMLFADTVLPGLPKDQVH 199

Query: 100 -LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            +  Q            S + +KE   +T     L +  RS ND        ++G   K 
Sbjct: 200 HVTDQ---DMDGVGPGSSLVGVKEDHDYTVHDLWLGVFLRSGNDAVHVL-SAMNGGIDKT 255

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
              M   A+++   +T   +  G     Q+++A D  ++     +    + +Y    + +
Sbjct: 256 VKDMQAHAEELQALDTHVVSPDGYDAPEQVSSAYDLTLIARSGLQK-QDFREYCGTAEAK 314

Query: 219 YRNR----------IITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
           +  R           I N N+L+           I G+K G T  +G     + +  D  
Sbjct: 315 FPGRQEAGRPREYFEIQNTNRLMTGAGGIAPYKGIAGVKNGNTTMAGSTFTGAAQRGDKK 374

Query: 263 IVAVVMGMPTS--QERDQKALELITSFL 288
           ++  VM           ++  +L     
Sbjct: 375 LLVTVMNPDNGGLNGVYEETAQLFDWGF 402


>gi|229163983|ref|ZP_04291922.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
 gi|228619485|gb|EEK76372.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
          Length = 273

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 60/276 (21%), Positives = 122/276 (44%), Gaps = 22/276 (7%)

Query: 30  LMGKILFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDEPRYPASLT 81
           +M   LF  +I +S A    A    +P  +    I I  +  ++   K +DE  YPAS+ 
Sbjct: 3   VMIATLFTGMIFLSYAHRQQAVRADQPSITGQYGITIAADTGEILYGKREDERSYPASIA 62

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGILALITRS 139
           KMMT  ++ E ++      + +I +++ A        K+ L+       ++ +  ++  S
Sbjct: 63  KMMTTLLLLENVKE-----DEEITITENAIKTESQSKKIKLRAGEKLKRDEALKLMLIIS 117

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           A+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        +  D AI+  
Sbjct: 118 ADPIAESIAEHIAGSKNEFVKMMNERAKELGTKHATFKNASGADALGNKVSPYDIAIITK 177

Query: 200 LLRKNFPQYYKYFSIRKFR----YRNRIITNHNK-LLNKMHNIDGIKTGYTRNSGFNIVT 254
              K +P   +Y +  +       R+  I N+ +  L       G K+G +    + +VT
Sbjct: 178 EALK-YPVVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVT 236

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
                   ++ VV+   T  +      ++     ++
Sbjct: 237 VDEKDGKRVINVVL-SSTRTQLYPDTKKMAHYAFQQ 271


>gi|329934886|ref|ZP_08284927.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           griseoaurantiacus M045]
 gi|329305708|gb|EGG49564.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           griseoaurantiacus M045]
          Length = 461

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 100/276 (36%), Gaps = 24/276 (8%)

Query: 30  LMGKILFLSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLY 87
           + G+ L L  + +    ++ AK    + +V D    ++           PAS  KM+   
Sbjct: 39  IGGERLGLPGLQVRGGVDVPAKLTARAWLVADHESGEVLAAFNAHKHLAPASTLKMLFAD 98

Query: 88  IIFEYLQSKKLHLNTQIPVSKT---AATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
            +       K     +  V++          S + +KE   +T EQ  L +  RS ND  
Sbjct: 99  TVL-----GKFDRTDRHKVTREEIADVPTGSSLVGIKENITYTVEQLWLGVFLRSGNDAV 153

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
                 ++G   K    M  +A  +   +T  ++  G   K Q+++A D  +      KN
Sbjct: 154 HVL-SHMNGGIAKTVAEMQARAADLQALDTQVRSPDGFDHKGQVSSAYDLTLFARHGLKN 212

Query: 205 FPQYYKYFSIRKFRY-----RNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIV 253
              + +Y   R   +     +   I N ++LL           + G+K GYT ++G    
Sbjct: 213 -DDFRRYCGTRTADFPAGGKKTFQIQNTDRLLTGAWGLETYEGLIGVKNGYTSHAGNTFT 271

Query: 254 TSLRYKDDPIVAVVMGMPT-SQERDQKALELITSFL 288
            +       ++  V+   +      ++  +L+    
Sbjct: 272 GAATRNGRTLLVSVLHPESGGNGVYKETAKLLDWGF 307


>gi|118444189|ref|YP_877702.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT]
 gi|118134645|gb|ABK61689.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT]
          Length = 443

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 119/310 (38%), Gaps = 57/310 (18%)

Query: 55  SSIVIDVNKNQMTGFKQDE--PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           S+IVID    ++   K  +  P YPAS        ++   L ++       +  ++ +  
Sbjct: 36  SAIVIDAKTGEVIYAKNADASPMYPAST-----TKLLTALLLAENKKPTDMLTYTEGSIK 90

Query: 113 QNPSKLY------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
           Q    L       LK     + +  +  L+  SAND+++   + + G+ + FA +M++K 
Sbjct: 91  QPEYTLRSFLKGKLKVGDTMSADDAMKGLLLHSANDIASMIADNVGGNTENFAKMMNDKV 150

Query: 167 KKIGMQNTIYKNASGLHD--KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR--NR 222
           K++G++NT +   +GL     +  T+A D +I+G     N        +++K +    N 
Sbjct: 151 KQLGLKNTHFVTPNGLDSGISDHYTSAYDLSIIGKAAYSN-EWIRNTMNLKKSKVELSNG 209

Query: 223 II---TNHNKLLNKMHN--------------------IDGIKTGYTRNSGFNIVTSLRYK 259
           I+    N NKL+  + +                      G KTG+T  +G  +V      
Sbjct: 210 ILGYPQNRNKLVGTVLDSKFLSTIGNISKNIPESNAVCVGGKTGFTTKAGRCLVAMFNKD 269

Query: 260 DDPIVAVVMGM---PTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIK 316
           +  ++ VVM                +++     +K +                K ++ +K
Sbjct: 270 NRVLIGVVMKSVYDKNDTYVFNDMAKIMNFAYFQKPV-------------PLYKANIELK 316

Query: 317 KLKRTYSQFK 326
            L   Y   K
Sbjct: 317 TLPIQYRPLK 326


>gi|297587879|ref|ZP_06946523.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna ATCC
           53516]
 gi|297574568|gb|EFH93288.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna ATCC
           53516]
          Length = 289

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 25/225 (11%)

Query: 65  QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYL 120
           ++     D+  YPASLTKMMT++     ++      + + P+ K +      QN S    
Sbjct: 50  EIFSKNPDKKVYPASLTKMMTVHTALGEIED----FDKKAPIDKKSYQKLVAQNASMAGF 105

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
                 T E  +   +  SA + + +    ++GS++KF  LM+  AKK+G+ NT +KN+ 
Sbjct: 106 YGNEPTTFEDLLYGTMLASAGECADSLAINVAGSKEKFVDLMNENAKKMGLNNTHFKNSE 165

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR-------YRNRIITNHNKLLNK 233
           G+ + N  ++A+D A L     KN  ++YK F+  K+         +   I +   +L +
Sbjct: 166 GMDEDNHYSSAKDMAFLLKNSLKN-EKFYKIFTTGKYTSTKTLDHPKGIEIEST--VLGR 222

Query: 234 MHN-------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           + +       I G K+G T  +G    T         + +VMG+ 
Sbjct: 223 LKDYDQDGFKIIGGKSGTTEKAGLCWATLSEKNGKKYIIIVMGVD 267


>gi|228993740|ref|ZP_04153645.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
           12442]
 gi|228765951|gb|EEM14600.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
           12442]
          Length = 279

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 61/284 (21%), Positives = 124/284 (43%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYS---------SIVIDVNKNQMTGFKQDEP 74
           ++R I ++  I  L   MI  +     K   S          + ID N  ++   K++E 
Sbjct: 1   MKRTIIMIVMIATLFTSMIFFSYTKRQKDVRSNQPDITGKYGVTIDANTGEVLYGKREEE 60

Query: 75  R-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP--SKLYLKEKTYFTTEQG 131
           R YPAS+ KMMT  ++ E ++      + +I +++ A       +K+ L+       ++ 
Sbjct: 61  RSYPASVAKMMTTILLLENVKE-----DEEITITENAIKTESQSAKIKLRAGEKLKRDEA 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS++KF  +M+ +AK++G ++  +KNASG        + 
Sbjct: 116 LKLMLIISADPIAESIAEHIAGSKEKFVKMMNARAKELGTKHATFKNASGADALGNKVSP 175

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNR----IITNHNK-LLNKMHNIDGIKTGYTR 246
            D AI+     K +P   +Y +  +           I N+ +  L       G K+G + 
Sbjct: 176 YDIAIITKEALK-YPIVLEYMNTTRTTLHTSQRAPKIANYGREELYNDPYAIGSKSGLSA 234

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T  +      ++     ++
Sbjct: 235 LGQYTVVTVDEKDGKRVINVVL-SSTRTQLYPDTKKMAHYAFKQ 277


>gi|118161406|gb|ABK64087.1| putative carboxypeptidase [Janthinobacterium lividum]
          Length = 583

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 87/233 (37%), Gaps = 17/233 (7%)

Query: 57  IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D    ++   K  +   P AS+TK+MT  ++ +      L  + Q+ + +  A  + 
Sbjct: 344 LVFDDASGKVLMAKDADAVVPIASITKLMTAMVVLDAG----LDPDEQLRIVR--ADGDS 397

Query: 116 S---KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           S      L +    +    +   +  S N  + A      G    FA  +  K + +G+ 
Sbjct: 398 SLQRHSLLADGVAVSRGALLQLALLPSENRAAAALARTYPGGNAAFAQALQAKIRHLGLS 457

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIITNHN 228
            T      G       +TA + A +     + +P   +  S  +       + R + N N
Sbjct: 458 RTTLTEPVGSS-PANTSTAIEVAKIVAAAAR-YPDIARITSHPQASVAVNGKTRTLHNTN 515

Query: 229 KLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
            L+  K  +I   KTG +  +G  +   +R     +  V++    +Q R   A
Sbjct: 516 PLVGGKGWDILLSKTGSSNEAGSCLTMRMRSGGKHVTVVLLDADGAQRRSLDA 568


>gi|145490104|ref|XP_001431053.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398155|emb|CAK63655.1| unnamed protein product [Paramecium tetraurelia]
          Length = 354

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 101/283 (35%), Gaps = 47/283 (16%)

Query: 57  IVIDVNKNQ---MTGFKQDE------PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS 107
           IV++ N  Q   +      E          ASLTK+MT Y+  + ++  K+++   + VS
Sbjct: 74  IVMNGNDGQNLAVIQLNNQESFNSKKRVQIASLTKLMTCYVAIQLIRDLKINIYQIMYVS 133

Query: 108 KT-------AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK--- 157
                    A   + +  +L+     T    +  L+  S ND +    E +S   K    
Sbjct: 134 YDVYILTFKAVQISGTSAFLRAYDRITLYDLLHGLMLPSGNDAANVIAENLSSFVKDPVS 193

Query: 158 ----------FAILMSNKAKKIGMQNTIYKNASG--------LHDKNQITTARDQAILGI 199
                     F  LM+  A  + M +T + N  G        L +    + A D A L  
Sbjct: 194 NIALQYRIQPFISLMNQYALLLDMNDTQFYNPHGKPTSIFSGLSNDQSYSCAEDLATLCK 253

Query: 200 LLRKNFPQYYKYFSIRKFRYR--------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
            +  + P      + ++ +               N NK+L       G KTG+T  +G  
Sbjct: 254 QIIND-PLLMDIVNKKEHQATIQRNNKLIKLTWENTNKMLE-FEGYCGFKTGFTNKAGPC 311

Query: 252 IVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
           + T  +     I+ +++   + + R    ++L      K  L 
Sbjct: 312 LATLFKKDSICIIIIILNCLSKEVRWDDTIKLSNWAQRKLNLN 354


>gi|289769566|ref|ZP_06528944.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
 gi|289699765|gb|EFD67194.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
          Length = 475

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 94/274 (34%), Gaps = 31/274 (11%)

Query: 42  ISMASELHAKPK----YSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSK 96
           + +A      PK     S IV D     +           PAS  KM+    +       
Sbjct: 113 VDLAGGAPVLPKDLTARSWIVADAESGDVLAAHNAHWELAPASTLKMLFADTLLPKWPK- 171

Query: 97  KLHLNTQIPVSKTAATQNPSKL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                 ++ VS  A   + S +  +KE+  +T     L +  RS ND          G E
Sbjct: 172 --TTKRKVQVSDLAGIGSGSSMVGIKEEETYTVHDLWLGVFLRSGNDAVHVLSAMNDGVE 229

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI--LLRKNFPQY----- 208
           K     M+  AK++   +T   +  G     Q+++A D  +     L +K+F +Y     
Sbjct: 230 KT-VADMNAHAKELQAGDTTVVSPDGYDMPGQVSSAYDLTLFARSGLQKKDFREYASTVR 288

Query: 209 YKYFSIRKFRYRNRI------ITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSL 256
            K+    K   + +       I N N+LL           I G+K GYT N+G       
Sbjct: 289 AKFPGETKKDKKGKTSREPFEIQNTNRLLAGDTDVEVYPGIAGVKNGYTTNAGNTFTGVA 348

Query: 257 RYKDDPIVAVVMGMPTSQ--ERDQKALELITSFL 288
                 ++  VM     +  E  ++   L     
Sbjct: 349 EQGGKVLLVTVMHPAEDKHNEVYKETARLFDWGF 382


>gi|29830324|ref|NP_824958.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces avermitilis
           MA-4680]
 gi|29607435|dbj|BAC71493.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           avermitilis MA-4680]
          Length = 888

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/282 (24%), Positives = 117/282 (41%), Gaps = 17/282 (6%)

Query: 64  NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLY 119
             +    +  P+  AS+ K+MT Y+I E    K      +I V + A      ++ S   
Sbjct: 548 GTVGTAGKQAPKPIASVAKIMTAYVILEEHPLKGTAAGDKITVDQQAEDESKNEDESTAA 607

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           + +   FT  Q +  L+  S N+ +     + S SE  F   M+  AKK+GM N+ Y + 
Sbjct: 608 MTKGQKFTERQMLQMLMIPSGNNAARLLARWDSDSE-TFVGKMNAAAKKLGMTNSTYTDP 666

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIITNHNKLLNKMHNI 237
           SGL +K  ++TA DQ  L   + +    +     + K         I N+N LL K   +
Sbjct: 667 SGL-EKTTVSTATDQLKLAKAVMQK-EVFRSIVGMAKADIPGLKGTIYNNNDLLVKQVGV 724

Query: 238 DGIKTGYTRNSGFNIVTSLRY--KD--DPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
            G+KTG +  +G N+V +           I   V+       R   +L+L  +  +K   
Sbjct: 725 IGLKTGSSTPAGGNLVWAATKTVNGKVRTIYGAVLNQDAGTGRVWDSLQLALTNSQKLID 784

Query: 294 KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           K QQ      +S+  +KK  ++  +         + A  + T
Sbjct: 785 KVQQ----GLISAPVVKKGQVVGYVDDQLGGRTPVVATENMT 822


>gi|228999784|ref|ZP_04159358.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
 gi|229007339|ref|ZP_04164938.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4]
 gi|228753944|gb|EEM03383.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4]
 gi|228759991|gb|EEM08963.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
          Length = 273

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/277 (22%), Positives = 124/277 (44%), Gaps = 24/277 (8%)

Query: 30  LMGKILFLSIIMISM--------ASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASL 80
           +M   LF S+I  S         +++     KY  + ID N  ++   K++E R YPAS+
Sbjct: 3   VMIATLFTSMIFFSYTKRQKDVRSNQPDITGKYG-VTIDANTGEVLYGKREEERSYPASV 61

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP--SKLYLKEKTYFTTEQGILALITR 138
            KMMT  ++ E ++      + +I +++ A       +K+ L+       ++ +  ++  
Sbjct: 62  AKMMTTILLLENVKE-----DEEITITENAIKTESQSAKIKLRAGEKLKRDEALKLMLII 116

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           SA+ ++ +  E I+GS++KF  +M+ +AK++G ++  +KNASG        +  D AI+ 
Sbjct: 117 SADPIAESIAEHIAGSKEKFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAIIT 176

Query: 199 ILLRKNFPQYYKYFSIRKFRYRNR----IITNHNK-LLNKMHNIDGIKTGYTRNSGFNIV 253
               K +P   +Y +  +           I N+ +  L       G K+G +    + +V
Sbjct: 177 KEALK-YPIVLEYMNTTRTTLHTSQRAPKIANYGREELYNDPYAIGSKSGLSALGQYTVV 235

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           T        ++ VV+   T  +      ++     ++
Sbjct: 236 TVDEKDGKRVINVVL-SSTRTQLYPDTKKMAHYAFKQ 271


>gi|311893558|dbj|BAJ25966.1| putative peptidase S11 family protein [Kitasatospora setae KM-6054]
          Length = 316

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 13/205 (6%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTE 129
           P   AS+TK+MT Y+I      +      +I V   AA +      S   L+E    T  
Sbjct: 61  PVPIASVTKVMTAYVILRGHPLEDGGQGPRIGVDAAAARESFAPGESTAQLREGQDLTER 120

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           Q +  ++  S N+V+     + SGS++ F + M+  A ++GM  T Y  ASGL +++  +
Sbjct: 121 QLLELMLLPSGNNVARLLARWDSGSQEAFVVKMNRAALELGMTRTTYTGASGL-EESTRS 179

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRN 247
           TA DQ  L        P   +   +R+         + N N LL +   + G+KTG T  
Sbjct: 180 TAEDQIRLARAAM-GLPVLREVVGMRETTVAGVPGTVVNTNTLLGR-DGVIGLKTGSTTA 237

Query: 248 SGFNIVTSLRY---KDDPIV-AVVM 268
           +G N++ +          +V  VV+
Sbjct: 238 AGGNLMWAAEVRAGGGVRLVLGVVL 262


>gi|239988485|ref|ZP_04709149.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           roseosporus NRRL 11379]
          Length = 384

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 70/272 (25%), Positives = 121/272 (44%), Gaps = 18/272 (6%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
            S+++ID     +      +P   AS+ K+MT Y+I +    K      +I V + A  +
Sbjct: 36  QSAVMID-GVGSLGSEGAQKPAPIASVAKVMTAYVILQEHPLKGDEEGEKITVDQQAEDE 94

Query: 114 ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
               + S   L +    T  Q +  L+  S N+ +     + +GSE  F   M++ AK+I
Sbjct: 95  SKRPDESTAPLTKGQELTQRQLLQLLMIPSGNNAARLLARWDAGSEDAFIDKMNDAAKEI 154

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSIRKFRYRNRIITNH 227
           GM  + Y + SGL +K  ++TA DQ  L   + +N  F +      +       +I  N+
Sbjct: 155 GMTGSTYTDPSGL-EKTTVSTATDQLKLAQAVMRNDVFREIVDMPEVEIEGIDGKIYNNN 213

Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSL--RYKDDPI--VAVVMGMPTSQERDQKALEL 283
           N LL     + GIKTG +  +G N++ S   +     +     VMG      R   +LEL
Sbjct: 214 NLLLQ--PGVSGIKTGSSTPAGGNLLWSANTKVDGKMLWIYGAVMGQQAGTGRVYDSLEL 271

Query: 284 ITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMI 315
                 + +LK  +  ++   S+T +KK  ++
Sbjct: 272 ----SLQNSLKLIKDAQEAATSATVVKKGDVV 299


>gi|302552148|ref|ZP_07304490.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces viridochromogenes
           DSM 40736]
 gi|302469766|gb|EFL32859.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces viridochromogenes
           DSM 40736]
          Length = 930

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 106/226 (46%), Gaps = 13/226 (5%)

Query: 52  PKYSSIVIDVNK-NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P      +DV          + +P   AS+ K+MT Y+I      K      +I + + A
Sbjct: 581 PDKGQAALDVQGIGTFGSSGEQKPVPIASVAKVMTAYLILREHPLKSGAPGPKIEIDQAA 640

Query: 111 ATQN----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
             Q+     S + + +    T  + + +++  SAN+++     + +GSEK F   M++ A
Sbjct: 641 EDQSDAGQESTVDVTKGDKITQREALESILIASANNIARLLARWDAGSEKSFVQKMNDAA 700

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-RYRNRIIT 225
           K +GM+NT Y + SGL++   ++TA DQ  L     +  P + +  ++  +  Y+     
Sbjct: 701 KDLGMKNTTYTDPSGLNN-TTVSTAVDQVKLAKAAMQQ-PAFREVAAMMSYVDYKGTKHD 758

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK----DDPIVAVV 267
           N N+L+   +++ GIKTG T ++  N+V + +         I+  V
Sbjct: 759 NWNRLVG-YNDVTGIKTGTTTSALGNLVFAAKKDVDGETRRIIGAV 803


>gi|224541857|ref|ZP_03682396.1| hypothetical protein CATMIT_01029 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525207|gb|EEF94312.1| hypothetical protein CATMIT_01029 [Catenibacterium mitsuokai DSM
           15897]
          Length = 294

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 112/295 (37%), Gaps = 44/295 (14%)

Query: 25  QRNIQLMGKILFLSIIMI------------SMASELHAKPKYSSIVIDVNKNQMTGFKQD 72
           ++ I ++  I  LS                S+          S++V+D +  ++   K +
Sbjct: 4   RKWICMLCAIFLLSACATKEPVKEEKKKVVSIPQPTLNTEDVSAVVMDADTGKVYYAKNE 63

Query: 73  -EPRYPASLTKMMTLYIIFEYLQSKK-------LHLNTQIPVSKTAATQNPSKLYLKEKT 124
            E RYPAS  K+++  +  +Y +          + L  ++ +             + +  
Sbjct: 64  QESRYPASTIKLLSALVAIDYYKDNDALTTRNIMSLPDRVFI---------HTAPVYDGE 114

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
               +  I  ++ +S+N+++    E   G    F   M+ +AKKIG       N  GL  
Sbjct: 115 RIPFKDVIHGMLLKSSNEMALTLAENYKGGYDGFIEAMNKRAKKIGCTKVDVSNPHGLSY 174

Query: 185 KN-----QITTARDQAILGILLRKNFPQYYKYFSIRKFRY---RNRIITNHNKLLNKMHN 236
            +     +  + +D A++     KN  +  K  S   + +    NR + N  ++  K   
Sbjct: 175 ADKGWLKETCSTKDMALIAKEFYKN-KKLRKIISTESYIFESNPNREMKNV-RMTQKDST 232

Query: 237 -----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
                + G KTG+T  +G  +VT  + K   I+ VV    T  E      +L+  
Sbjct: 233 YYDKRVIGGKTGFTNLAGRCLVTYSKVKKKTIITVVFKENTRGETYTDTKKLLDY 287


>gi|291439005|ref|ZP_06578395.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
           14672]
 gi|291341900|gb|EFE68856.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
           14672]
          Length = 853

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 105/227 (46%), Gaps = 14/227 (6%)

Query: 52  PKYSSIVIDVNK-NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P      +DV          + +P   AS+ K+MT Y++      K       I + + A
Sbjct: 503 PASGQAALDVQGIGTFGSSGEQKPVPIASVAKVMTAYLVLRDHPLKSGAEGPMIKIDELA 562

Query: 111 ATQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
             Q    + S + +      +  + I A++  SAN+V+     + +GSE+ F   M+  A
Sbjct: 563 EKQSDAGDESTVDVTAGDEISQREAIEAVLIASANNVARLLARWDAGSEEAFVEKMNEAA 622

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-RYRNRIIT 225
           K +GM +T Y + SGL++   ++TA DQ  L     +  P + +  ++  +  Y+ +   
Sbjct: 623 KDLGMTDTTYTDPSGLNN-TTVSTAVDQVKLAKAAMQQ-PVFREVAAMMSYDDYKGKNWP 680

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY---KDDPIV--AVV 267
           N N+L+   + + GIKTG T ++  N+V + +     +  ++  AVV
Sbjct: 681 NWNQLVGS-NGVVGIKTGTTTSALGNLVFAAKKEVDGETRLIIGAVV 726


>gi|167590610|ref|ZP_02382998.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ubonensis Bu]
          Length = 356

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 93/247 (37%), Gaps = 13/247 (5%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
             +A    ++ V+DV+       +     R  AS++K+MT  +  +        L+  + 
Sbjct: 110 AANALHSRAAYVLDVSTGTPLLARNARTVRPIASISKLMTAVVARDA----DRPLDGMLR 165

Query: 106 VSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
           VS         +   L   +  +        +  S N  + A      G    F   M+ 
Sbjct: 166 VSSHDRDTIKFTHSRLSVGSTLSRRDMYRIALMSSENRAAAALSRDYPGGRPAFVAAMNR 225

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----R 220
           +A+++GM+ T ++  +GL     ++TA + A+L     ++ P   ++ + +         
Sbjct: 226 EARRLGMRRTRFREPTGLS-PRNVSTAEELALLVDAAARD-PLIRRFSTAKSGTVHPGDG 283

Query: 221 NRIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
             +  N + L+      I   KTG+   +G  +V     +  P   V++G PT       
Sbjct: 284 KLLYVNSDPLVRYGQWPIQLQKTGFINEAGHGVVMRALVRGRPQTIVLLGSPTRDGVTSD 343

Query: 280 ALELITS 286
           AL +   
Sbjct: 344 ALRIRRW 350


>gi|163942729|ref|YP_001647613.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
 gi|163864926|gb|ABY45985.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
           weihenstephanensis KBAB4]
          Length = 279

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 125/284 (44%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A         +P  +    I ID +  ++   K +DE
Sbjct: 1   MKRTIIMIVMIATLFTGMIFFSYAQRQQVVRADQPNITGQYGITIDADTGEILYGKREDE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      + +I V++ A        K+ L+       ++ 
Sbjct: 61  RSYPASIGKMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 115

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 116 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSP 175

Query: 192 RDQAILGILLRKNFPQYYKYF----SIRKFRYRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D AI+     K +P   +Y     +      R+  I N+ +  L       G K+G + 
Sbjct: 176 YDIAIITKEALK-YPIVLEYMNSIHTTLHTSERSPKIANYGREELYDDSYAIGSKSGLSA 234

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T  +      ++     ++
Sbjct: 235 LGKYTVVTVDEKDGKRVINVVL-SSTRTQLYPDTKKMAHYAFQQ 277


>gi|297158127|gb|ADI07839.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces bingchenggensis
           BCW-1]
          Length = 430

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 97/277 (35%), Gaps = 34/277 (12%)

Query: 42  ISMASELHAKPK----YSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSK 96
           +S+     A PK     S +V D     +           PAS  KM+    +   +   
Sbjct: 67  VSLKGGAPALPKRLSGLSWMVADAESGDVLAAHNAHWELPPASTLKMLFADTVLPKIPKD 126

Query: 97  KLHLNTQIPVSKTAATQNPSK-LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
           + H   ++  S  A     S  + +KE   ++     L +  RS ND        ++G +
Sbjct: 127 REH---KVAPSDLAGMGAGSSLVGVKENLTYSVHDLWLGVFLRSGNDAVHVL-SAMNGGK 182

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
            K    M   A+++   +T      G  +K Q+++A D  +      +    + +Y S  
Sbjct: 183 AKTVEEMQAHAEQLNALDTHVVTPDGYDEKGQVSSAYDLTLFARSGLQK-ADFREYCSTA 241

Query: 216 KFRYRN----------------RIITNHNKLLN-----KMHNIDGIKTGYTRNSGFNIVT 254
             ++                    I N N+LL      +   I G+K GYT ++G     
Sbjct: 242 TAQFPGEYKKDKKNKGKKKRESFAIQNTNRLLTGFNVPQYKGIAGVKNGYTTHAGSTFTG 301

Query: 255 SLRYKDDPIVAVVMG--MPTSQERDQKALELITSFLE 289
             ++ D  ++  VM      + E  ++   L     +
Sbjct: 302 VAQHGDRVLLVTVMNPQKEEANEVYKETATLFDWGFK 338


>gi|239930641|ref|ZP_04687594.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
           14672]
          Length = 855

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 105/227 (46%), Gaps = 14/227 (6%)

Query: 52  PKYSSIVIDVNK-NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P      +DV          + +P   AS+ K+MT Y++      K       I + + A
Sbjct: 505 PASGQAALDVQGIGTFGSSGEQKPVPIASVAKVMTAYLVLRDHPLKSGAEGPMIKIDELA 564

Query: 111 ATQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
             Q    + S + +      +  + I A++  SAN+V+     + +GSE+ F   M+  A
Sbjct: 565 EKQSDAGDESTVDVTAGDEISQREAIEAVLIASANNVARLLARWDAGSEEAFVEKMNEAA 624

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-RYRNRIIT 225
           K +GM +T Y + SGL++   ++TA DQ  L     +  P + +  ++  +  Y+ +   
Sbjct: 625 KDLGMTDTTYTDPSGLNN-TTVSTAVDQVKLAKAAMQQ-PVFREVAAMMSYDDYKGKNWP 682

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY---KDDPIV--AVV 267
           N N+L+   + + GIKTG T ++  N+V + +     +  ++  AVV
Sbjct: 683 NWNQLVGS-NGVVGIKTGTTTSALGNLVFAAKKEVDGETRLIIGAVV 728


>gi|320010214|gb|ADW05064.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           flavogriseus ATCC 33331]
          Length = 893

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 114/263 (43%), Gaps = 20/263 (7%)

Query: 64  NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKLY 119
             +  + +++    AS+ K+MT Y+I +           QI V   A  +    + S   
Sbjct: 555 GTIGTYGKEKSAPVASVAKIMTAYVILQGHPITGKEDGEQIEVDAKAGEEANRPDESTAP 614

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           +KE   +T  Q +  L+  S N+V+     + + +EK F   M+  AK +GM N++Y + 
Sbjct: 615 IKEGQKYTQRQMLQLLMIPSGNNVARLLARWDATTEKAFVEKMNAAAKDLGMTNSVYTDP 674

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR---IITNHNKLLNKMHN 236
           SGL    + T A DQ  L   + +N   + +  ++ +         I  N+N LL     
Sbjct: 675 SGLESTTRSTPA-DQLKLAKAVMQN-DVFREIVNMPQAEIPGIGKMIYNNNNILLE--PG 730

Query: 237 IDGIKTGYTRNSGFNIVTSL----RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           + GIKTG +  +G N+V +       K   I+  VMG       D K    +     + +
Sbjct: 731 VSGIKTGSSTPAGGNLVWTADTVIDGKSRRIIGAVMGADVDGTLDAKLQRAL-----QTS 785

Query: 293 LKHQQTHRKDNLSSTSLKKSLMI 315
           L   QT +    S+T +KK  ++
Sbjct: 786 LALIQTAQDGVDSATVVKKGQVV 808


>gi|21223223|ref|NP_629002.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces coelicolor A3(2)]
 gi|7649577|emb|CAB89066.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           coelicolor A3(2)]
          Length = 424

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 94/274 (34%), Gaps = 31/274 (11%)

Query: 42  ISMASELHAKPK----YSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSK 96
           + +A      PK     S IV D     +           PAS  KM+    +       
Sbjct: 62  VDLAGGAPVLPKDLTARSWIVADAESGDVLAAHNAHWELAPASTLKMLFADTLLPKWPK- 120

Query: 97  KLHLNTQIPVSKTAATQNPSKL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                 ++ VS  A   + S +  +KE+  +T     L +  RS ND          G E
Sbjct: 121 --TTKRKVQVSDLAGIGSGSSMVGIKEEETYTVHDLWLGVFLRSGNDAVHVLSAMNDGVE 178

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI--LLRKNFPQY----- 208
           K     M+  AK++   +T   +  G     Q+++A D  +     L +K+F +Y     
Sbjct: 179 KT-VADMNAHAKELQAGDTTVVSPDGYDMPGQVSSAYDLTLFARSGLQKKDFREYASTVR 237

Query: 209 YKYFSIRKFRYRNRI------ITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSL 256
            K+    K   + +       I N N+LL           I G+K GYT N+G       
Sbjct: 238 AKFPGETKKDKKGKTSREPFEIQNTNRLLAGDADVEVYPGIAGVKNGYTTNAGNTFTGVA 297

Query: 257 RYKDDPIVAVVMGMPTSQ--ERDQKALELITSFL 288
                 ++  VM     +  E  ++   L     
Sbjct: 298 EQGGKVLLVTVMHPAEDKHNEVYKETARLFDWGF 331


>gi|187935277|ref|YP_001886777.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723430|gb|ACD24651.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum B
           str. Eklund 17B]
          Length = 425

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 70/308 (22%), Positives = 130/308 (42%), Gaps = 40/308 (12%)

Query: 24  IQRNIQLMGKILFLSIIMIS--------------MASELHAKPKYSSIVIDVNKNQMTGF 69
           ++RN+ L    L L+I + +               +  + A+   S++ +D    ++   
Sbjct: 1   MKRNLILKTLALTLTISLFAPFSVKSYATENTEQTSPSIQAE---SALTMDYETGEIIYA 57

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL-------K 121
           K  D  RYPAS        ++   L ++K   N++I  +++A  Q    L +       +
Sbjct: 58  KDADSKRYPAST-----TKLLTGLLLAEKFEKNSEISFTQSAKEQPEYSLNINYMGNKMQ 112

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
                  +  +  L+  S ND +    + ++GS   F+ LM+ KAK++G  N+ +  A+G
Sbjct: 113 VGDKMLADDVMKGLLLFSGNDTAYMIADNVAGSANAFSELMNKKAKELGANNSNFITANG 172

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIITNHNKLLNKMHNI 237
           LHD N  TTA D +++     +N P   +   +++          I+ N N  L K  NI
Sbjct: 173 LHDPNHYTTAYDLSLITKAAFEN-PWEKETMELKEAPIDINGSRIILENRNLGLGKNGNI 231

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL--ITSFLEKKTLKH 295
            G KTG T  +G  +          I+ VV+   + Q  +    +   + S +       
Sbjct: 232 AG-KTGSTNAAGGCLAAVYEKDGRKIIGVVL--KSRQLDNVDMTKFNDMDSIVNYSYSAD 288

Query: 296 QQTHRKDN 303
           +Q ++K N
Sbjct: 289 KQVYKKTN 296


>gi|256785674|ref|ZP_05524105.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
          Length = 424

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 94/274 (34%), Gaps = 31/274 (11%)

Query: 42  ISMASELHAKPK----YSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSK 96
           + +A      PK     S IV D     +           PAS  KM+    +       
Sbjct: 62  VDLAGGAPVLPKDLTARSWIVADAESGDVLAAHNAHWELAPASTLKMLFADTLLPKWPK- 120

Query: 97  KLHLNTQIPVSKTAATQNPSKL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                 ++ VS  A   + S +  +KE+  +T     L +  RS ND          G E
Sbjct: 121 --TTKRKVQVSDLAGIGSGSSMVGIKEEETYTVHDLWLGVFLRSGNDAVHVLSAMNDGVE 178

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI--LLRKNFPQY----- 208
           K     M+  AK++   +T   +  G     Q+++A D  +     L +K+F +Y     
Sbjct: 179 KT-VADMNAHAKELQAGDTTVVSPDGYDMPGQVSSAYDLTLFARSGLQKKDFREYASTVR 237

Query: 209 YKYFSIRKFRYRNRI------ITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSL 256
            K+    K   + +       I N N+LL           I G+K GYT N+G       
Sbjct: 238 AKFPGETKKDKKGKTSREPFEIQNTNRLLAGDTDVEVYPGIAGVKNGYTTNAGNTFTGVA 297

Query: 257 RYKDDPIVAVVMGMPTSQ--ERDQKALELITSFL 288
                 ++  VM     +  E  ++   L     
Sbjct: 298 EQGGKVLLVTVMHPAEDKHNEVYKETARLFDWGF 331


>gi|302535014|ref|ZP_07287356.1| predicted protein [Streptomyces sp. C]
 gi|302443909|gb|EFL15725.1| predicted protein [Streptomyces sp. C]
          Length = 879

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 67/219 (30%), Positives = 107/219 (48%), Gaps = 16/219 (7%)

Query: 64  NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-------NPS 116
             +    + +P   AS+TK MT YII      KK      I V KTA T+       N S
Sbjct: 554 GTIGSSGEQKPVPIASVTKSMTAYIIMRDHPFKKGEKGAMIDVDKTAETEGQKDKSDNES 613

Query: 117 KLY-LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
            L  +KE    +    I AL+  SAN+++     + SGS++ F   M++ AK++GM NT 
Sbjct: 614 TLNTVKEGEKISEYDAIAALMIPSANNIARLLARWDSGSQEAFVKKMNDTAKELGMTNTT 673

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR-YRNRIITNHNKLLNKM 234
           Y + SGL D   ++TA DQ  LG+ + +  P       +  +     ++  N N+L+   
Sbjct: 674 YTDPSGL-DATTVSTAEDQVKLGLKIVE-IPALVDITRMPAWTDQTGKVWQNWNRLV-PF 730

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYK----DDPIVAVVMG 269
           ++  GIKTG T  +G N++ + + K    +  +V  V+G
Sbjct: 731 NDSLGIKTGTTTKAGGNLLFAAQKKVGDTNQLLVGAVLG 769


>gi|172058567|ref|YP_001815027.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Exiguobacterium sibiricum 255-15]
 gi|171991088|gb|ACB62010.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Exiguobacterium sibiricum 255-15]
          Length = 421

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 9/203 (4%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV--SKTAATQNPSKLYLKEKTYFTTEQG 131
            RYPAS TK++T  + ++     K  L+    +  S  A     S    +     T  Q 
Sbjct: 203 RRYPASTTKLLTAIVAYDAAAQ-KGTLDQTFTLTYSMLAVPSGSSTAGFRSGDKVTMRQL 261

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++ RS ND + A     +GSE KF  LM+++A +IGM  + + N  G +  +  TTA
Sbjct: 262 LNGMLIRSGNDAAKAIAVRTAGSESKFVSLMNSRASRIGMSASHFMNPHGFYHPSHYTTA 321

Query: 192 RDQAILG------ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
            D   L         L     +     +++    R     + N  L     +   KTGYT
Sbjct: 322 ADMQKLANTYANYSYLMTVSGRKSFQTTVKGPYARTLTWYHTNTSLPGDTRVYASKTGYT 381

Query: 246 RNSGFNIVTSLRYKDDPIVAVVM 268
             S +  V  ++        V +
Sbjct: 382 PESAYTRVFFIKKGSTRYGLVTL 404


>gi|326777880|ref|ZP_08237145.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           cf. griseus XylebKG-1]
 gi|326658213|gb|EGE43059.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           cf. griseus XylebKG-1]
          Length = 368

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 90/206 (43%), Gaps = 13/206 (6%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL----YLKEKTYFTT 128
           +P   AS+TK+MT Y+I +    +       +   + AA ++ S +     +     +T 
Sbjct: 111 KPVPIASVTKVMTAYVILKDHPMRADSHGATVVADRRAADESYSSVETTAPVLAGKEYTQ 170

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            + +  ++  S N+V+     + +G E+ F   M+  A  +GM+ T Y   SG+      
Sbjct: 171 RRLLELMMVPSGNNVARLLARWDAGDEEAFVAKMNRAAAGLGMRATTYTGVSGMEAS-TR 229

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYR--NRIITNHNKLLNKMHNIDGIKTGYTR 246
           +TA DQ  L     K+ P + +  +              N NKLL +   + G+KTG + 
Sbjct: 230 STADDQLRLARAAMKD-PVFRQVVATASVTAPGAGATFRNTNKLLGR-DGVIGLKTGSST 287

Query: 247 NSGFNIVTSLRYK----DDPIVAVVM 268
            +G N+V +   K       I+ VV+
Sbjct: 288 PAGGNLVWATTQKVAGASRLILGVVL 313


>gi|317472783|ref|ZP_07932094.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
 gi|316899702|gb|EFV21705.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
          Length = 287

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 96/183 (52%), Gaps = 12/183 (6%)

Query: 56  SIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +++++   NQ+   ++  +  YPAS+TK+MT  ++ E  +     L+  + + K     +
Sbjct: 80  ALLVNNTTNQVVAAQKVFDKAYPASITKIMTALLVLENCR-----LDDVVTIDKDITFDD 134

Query: 115 PS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           P+   L+LK+    T E  +  LI  SAND + A G  ++GS+KKF  +M+ +A+++G  
Sbjct: 135 PAAVSLHLKKGDKITVEALLNGLIVMSANDTAIALGRKVAGSDKKFVAMMNKRARELGAT 194

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK--FRYRNRIITNHNKL 230
           NT ++N +GLH KN  TTA D  ++   L K   ++            Y N+  TN   L
Sbjct: 195 NTNFENPNGLHLKNHYTTAYDLYLIFQELVK-HNEFLSIAGKASSYIEYTNQK-TNSRHL 252

Query: 231 LNK 233
           + +
Sbjct: 253 IWQ 255


>gi|262197058|ref|YP_003268267.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Haliangium
           ochraceum DSM 14365]
 gi|262080405|gb|ACY16374.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Haliangium
           ochraceum DSM 14365]
          Length = 340

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 98/268 (36%), Gaps = 18/268 (6%)

Query: 56  SIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--AT 112
           ++++D    +    K  DE    AS  K+    ++ E      + L     +S+      
Sbjct: 60  AVILDAETGEPLFAKHADEVAAIASTGKIFVAMVVRERG----IDLEAVTEISEVDRMYA 115

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           +  ++  L     F     + A++  S N    A G  +  S ++    M++ A ++G++
Sbjct: 116 RGGARTRLDVGHGFRNIDLLRAMLVSSDNRAPIALGRAVGLSPEQLVAAMNHMASELGLR 175

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-------RIIT 225
           +T +   SGL  +  ++TA + AI       + P   +     +   R+           
Sbjct: 176 HTRFTCPSGL--RGNVSTAYEMAIALRAALAD-PVLAEIMGTAEVNVRSLHSKPRAIDYR 232

Query: 226 NHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N  L +    + G KTG+TR +G+ +V + R     ++    G      R        
Sbjct: 233 NTNLSLRRSSFEVLGGKTGFTRAAGYCLVVAARLAGRDVIMAFFGETHELTRFGDFERAA 292

Query: 285 TSFLEKKTLKHQQTHRKDNLSSTSLKKS 312
              +  +T         D  ++ +  + 
Sbjct: 293 RWLMAGRTEPPAGVGGHDPAATVASGEG 320


>gi|78062125|ref|YP_372033.1| murein-DD-endopeptidase [Burkholderia sp. 383]
 gi|77970010|gb|ABB11389.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Burkholderia sp. 383]
          Length = 364

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 97/236 (41%), Gaps = 13/236 (5%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAAT 112
           ++ V+DV+       +     R  AS++K+MT  +  +  +     L  ++    +    
Sbjct: 126 AAYVLDVDSGTPLLARNARTVRPIASISKLMTAVVARDADRPLNGVL--RVTAHDRDTIK 183

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S+  L+  +  +  +     +  S N  + A      G    F   M+ +A+++GM+
Sbjct: 184 FTGSR--LQVGSELSRREMFHIALMSSENRAAAALSRDYPGGRAAFVNAMNREARRLGMR 241

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR----IITNHN 228
           +T ++  +GL   + ++TA D A L     ++ P    + +      R      +  N +
Sbjct: 242 HTHFREPTGLS-PHNVSTAEDLAKLVGAAAQD-PLIRYFSTDTSTTVRPGDGELLYVNSD 299

Query: 229 KLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            L+  +   I   KTG+   SG  +V  +R K      V++G PT       A+++
Sbjct: 300 PLVRYRRLPIRLQKTGFINESGHGVVMRMRVKGRRETVVLLGAPTRAGVSSDAIKI 355


>gi|229135841|ref|ZP_04264610.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
 gi|228647630|gb|EEL03696.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
          Length = 301

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 62/284 (21%), Positives = 124/284 (43%), Gaps = 24/284 (8%)

Query: 24  IQRNIQLMGKI--LFLSIIMISMASELHA----KPKYSS---IVIDVNKNQMTGFK-QDE 73
           ++R I ++  I  LF  +I  S A         +P  +    I ID +  ++   K + E
Sbjct: 23  MKRTIIMIVMIATLFTGMIFFSYAQRQQVVRADQPNITGQYGITIDADTGEILYGKREGE 82

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQG 131
             YPAS+ KMMT  ++ E ++      + +I V++ A        K+ L+       ++ 
Sbjct: 83  RSYPASIGKMMTTLLLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEA 137

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           +  ++  SA+ ++ +  E I+GS+ +F  +M+ +AK++G ++  +KNASG        + 
Sbjct: 138 LKLMLIISADPIAESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSP 197

Query: 192 RDQAILGILLRKNFPQYYKYF----SIRKFRYRNRIITNHNK-LLNKMHNIDGIKTGYTR 246
            D AI+     K +P   +Y     +      R+  I N+ +  L       G K+G + 
Sbjct: 198 YDIAIITKESLK-YPIVLEYMNSIHTTLHTSERSPKIANYGREELYDDPYAIGSKSGLSA 256

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +VT        ++ VV+   T  +      ++     ++
Sbjct: 257 LGKYTVVTVDEKDGKRVINVVL-SSTRTQLYPDTKKMSHYAFQQ 299


>gi|134293778|ref|YP_001117514.1| murein-DD-endopeptidase [Burkholderia vietnamiensis G4]
 gi|134136935|gb|ABO58049.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Burkholderia vietnamiensis G4]
          Length = 363

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 91/237 (38%), Gaps = 15/237 (6%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAAT 112
           ++ V+DV+       +     R  AS++K+MT  +  +  +     L  ++    +    
Sbjct: 125 AAYVVDVDSGTPLLARNARTVRPIASISKLMTALVARDADRPLNGVL--RVTARDRDTIK 182

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S+L +      +  Q     +  S N  + A      G    F   M+ KA+++GM+
Sbjct: 183 FTGSRLPV--GAELSRRQMFHIALMSSENRAAAALSRDYPGGRAAFVGAMNRKARQLGMR 240

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHN 228
            T ++  +GL   + ++TA D A L      + P    + +             +  N +
Sbjct: 241 ATHFREPTGLS-PHNVSTAEDLARLVGAAAHD-PLIRYFSTDTSTTIEAGDGELLYVNSD 298

Query: 229 KLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            L+   ++  I   KTG+   SG  +V   R        V++G  T       AL++
Sbjct: 299 PLVRYGRLP-IRLQKTGFINESGHGVVMRTRVHGRRETIVLLGASTRAGVSSDALKI 354


>gi|206563597|ref|YP_002234360.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia cenocepacia
           J2315]
 gi|198039637|emb|CAR55605.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein
           precursor) [Burkholderia cenocepacia J2315]
          Length = 360

 Score =  148 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 96/236 (40%), Gaps = 13/236 (5%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAAT 112
           ++ V+DV+       +     R  AS++K+MT  +  +  +     L  ++    +    
Sbjct: 122 AAYVLDVDSGTPLLARNARTVRPIASISKLMTAVVARDADRPLNGVL--RVTARDRDTIK 179

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S+  L+  +  +  +     +  S N  + A      G    F   M+ +A+++GM+
Sbjct: 180 FTGSR--LQVGSELSRREMFHIALMSSENRAAAALSRDYPGGRVAFVKAMNREARRLGMR 237

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR----IITNHN 228
           +T ++  +GL   + ++TA D A L     ++ P    + +      R      +  N +
Sbjct: 238 HTHFREPTGLS-PHNVSTAEDLARLVGAAAQD-PLIRYFSTDLSTTVRPGDGELVYVNSD 295

Query: 229 KLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            L+  +   I   KTG+   SG  +V  +R K      V++G PT       A+ +
Sbjct: 296 PLVRYRRLPIRLQKTGFINESGHGVVMRMRVKGRRETVVLLGAPTRAGVSSDAIRI 351


>gi|264676435|ref|YP_003276341.1| peptidase S11, D-alanyl-D-alanine [Comamonas testosteroni CNB-2]
 gi|262206947|gb|ACY31045.1| peptidase S11, D-alanyl-D-alanine [Comamonas testosteroni CNB-2]
          Length = 165

 Score =  148 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 46/141 (32%), Positives = 82/141 (58%), Gaps = 4/141 (2%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           +   +  E+ A+   + +++DV   Q+ G K  D P   ASLTK+M+ Y++F+ L+SKK+
Sbjct: 26  VAAPVPPEIAAR---NYLLVDVTAGQVLGAKDVDAPVEQASLTKLMSAYVVFDALRSKKI 82

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            L  ++PVS+ A     S++++  K        +  +I +S ND + A  E + G+ + F
Sbjct: 83  TLEQRMPVSERAWKMPGSRMFIDPKMQVPVNDLLSGMIIQSGNDATMALAEAVGGTAENF 142

Query: 159 AILMSNKAKKIGMQNTIYKNA 179
             +M+++AK +GM+NT YKN 
Sbjct: 143 VKMMNDQAKALGMKNTSYKNP 163


>gi|297193840|ref|ZP_06911238.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|297151973|gb|EDY65162.2| D-alanyl-D-alanine carboxypeptidase [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 454

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 110/251 (43%), Gaps = 20/251 (7%)

Query: 49  HAKPKYSSIVIDVNK-NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS 107
            A+ + ++ V+ V    Q    K   P   AS+ K MT Y+I          +  +I V 
Sbjct: 102 PAEGQGAAEVVGVGSLGQYGAQK---PAPIASVAKTMTAYVILRDHPITGKQVGPKITVD 158

Query: 108 KTAATQN----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
           K A  ++     S   +KE   FT +Q +  L+  S N+ +     + +GSE+ F   M+
Sbjct: 159 KKAEEESKAKSESTAPIKEGQQFTEKQMLQLLMIPSGNNAARLLARWDAGSEEAFVKKMN 218

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR- 222
           + AK +GM N+ Y + SGL     ++T  DQ  LG  + +N   + +  +  +       
Sbjct: 219 DAAKDLGMTNSTYTDPSGLKA-TTVSTPLDQIKLGKAVMEN-DVFREIVNTTRIEIPGID 276

Query: 223 -IITNHN--KLLNKMHNIDGIKTGYTRNSGFNIVTSLR--YKD--DPIVAVVMGMPTSQE 275
             I N+N   LL  M  + GIKTG +  +G N++ S           IV +VMG   +  
Sbjct: 277 GKIRNNNDRALL--MDGVGGIKTGSSTPAGGNLLWSANAVVDGEVRRIVGIVMGAQDAPA 334

Query: 276 RDQKALELITS 286
             QK  + I  
Sbjct: 335 LWQKLEKAIDY 345


>gi|188588906|ref|YP_001921735.1| D-alanyl-D-alanine carboxypeptidase family [Clostridium botulinum
           E3 str. Alaska E43]
 gi|251779044|ref|ZP_04821964.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|188499187|gb|ACD52323.1| D-alanyl-D-alanine carboxypeptidase family [Clostridium botulinum
           E3 str. Alaska E43]
 gi|243083359|gb|EES49249.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 425

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/308 (22%), Positives = 129/308 (41%), Gaps = 40/308 (12%)

Query: 24  IQRNIQLMGKILFLSIIMIS--------------MASELHAKPKYSSIVIDVNKNQMTGF 69
           ++RN+ L    L L+I + +               +  + A+   S++ +D    ++   
Sbjct: 1   MKRNLILKTLALTLTISLFAPFSVKSYATENTEQTSPSIQAE---SALTMDYETGEIIYA 57

Query: 70  KQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL-------K 121
           K  D  RYPAS        ++   L ++K   N+++  +++A  Q    L +       +
Sbjct: 58  KDADSKRYPAST-----TKLLTGLLLAEKFEKNSELSFTQSAKEQPEYSLNINYMGNRMQ 112

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
                  +  +  L+  S ND +    + ++GS   F+ LM+ +AK++G  NT +  A+G
Sbjct: 113 VGDKMLADDVMKGLLLFSGNDTAYMIADNVAGSSDAFSALMNKRAKELGANNTNFITANG 172

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIITNHNKLLNKMHNI 237
           LHD N  TTA D +++      N P   +   +++          I+ N N  L K  NI
Sbjct: 173 LHDPNHYTTAYDLSLITKAAFDN-PWERETMELKESPIDINGSRIILENRNLGLGKNGNI 231

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL--ITSFLEKKTLKH 295
            G KTG T  +G  +          IV VV+   + Q  +    +   + S +       
Sbjct: 232 AG-KTGLTNAAGGCLAAVYEKDGRKIVGVVL--KSRQIDNVDMTKFNDMDSIINYSYSTD 288

Query: 296 QQTHRKDN 303
           +Q ++K N
Sbjct: 289 KQVYKKAN 296


>gi|239942888|ref|ZP_04694825.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           roseosporus NRRL 15998]
 gi|239989348|ref|ZP_04710012.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           roseosporus NRRL 11379]
 gi|291446361|ref|ZP_06585751.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291349308|gb|EFE76212.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 320

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 13/206 (6%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL----YLKEKTYFTT 128
           +P   AS+TK+MT Y+I +    +       +   + AA ++ S +     +     +T 
Sbjct: 81  KPVPIASVTKVMTAYVILKDHPMRAGAPGATVVADQRAADESYSSVETTAPVLAGREYTQ 140

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            + +  ++  S N+V+     + +G EK F   M+  A  +GM+ T Y   SG+      
Sbjct: 141 RRLLELMMVPSGNNVARLLARWDAGDEKAFVAKMNRTAAGLGMRATTYTGVSGMETS-TR 199

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYR--NRIITNHNKLLNKMHNIDGIKTGYTR 246
           +TA DQ  L     K+ P + +  +              N NKLL     + G+KTG + 
Sbjct: 200 STAADQLALARAAMKD-PAFRQIVATASVTAPGAGVTFRNTNKLLGH-DGVIGLKTGSST 257

Query: 247 NSGFNIVTSLRYK----DDPIVAVVM 268
            +G N+V + R K    D  ++ VV+
Sbjct: 258 PAGGNLVWATRQKVAGADRLVLGVVL 283


>gi|317471249|ref|ZP_07930614.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
 gi|316901296|gb|EFV23245.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
          Length = 198

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 13/200 (6%)

Query: 26  RNIQLMGKILFLSIIM---ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLT 81
           + I  +   LFL + +      A +       S+I++D    ++   K  + + P AS T
Sbjct: 2   KKIFCVIWSLFLCLQLGFHTVRADDTLKLYAKSAILMDAGSGRVLFDKSGKSKMPNASTT 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K++T   I ++      +L  +  VSK AA Q    L  +    +  +  +  L+  S N
Sbjct: 62  KILTCLYIIKHC-----NLEEEATVSKNAAAQPQVHLGARAGEKYKVKDLLYGLMLESYN 116

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKN--QITTARDQAIL 197
           D +    E  +GS + FA  ++ +A+  G ++T +   +GL   DKN    TTA D A++
Sbjct: 117 DCAVILAEHAAGSTENFAKKLNAEARSYGAKSTHFVTPNGLDRTDKNGIHSTTAYDLALI 176

Query: 198 GILLRKNFPQYYKYFSIRKF 217
                KN      + S + F
Sbjct: 177 MKQCIKNKEFLVDHQSQKPF 196


>gi|303232329|ref|ZP_07319024.1| serine-type D-Ala-D-Ala carboxypeptidase [Atopobium vaginae
           PB189-T1-4]
 gi|302481586|gb|EFL44651.1| serine-type D-Ala-D-Ala carboxypeptidase [Atopobium vaginae
           PB189-T1-4]
          Length = 399

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 89/218 (40%), Gaps = 21/218 (9%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTY 125
             D    PASLTK+MT+Y   +Y+++    L+ + P+          +N S         
Sbjct: 163 NADAQLPPASLTKIMTVYTALQYIRN----LDAKAPIDTASFAKLDDENASTAGFVAGEQ 218

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            T    +   + RS  + + +     +GSE  F   M+  A+K+G+++T + N +GL D 
Sbjct: 219 TTFRDLLYGTLLRSGAECAISLAVNTAGSEDAFVAKMNKNAQKMGLRHTHFTNTTGLDDN 278

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKF-------RYRNRIITNH---NKLLNKMH 235
           N ++TA +   +      N   + K F    +         +   I +    +   ++  
Sbjct: 279 NLMSTAHEIGQMLRQALTN-ETFRKIFCTASYDSSKTDKHPKGITIKSTVLSHLTPDEQQ 337

Query: 236 N--IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
              I G K+G T N+G    T +       + V MG P
Sbjct: 338 GFTILGGKSGTTDNAGLCWATLVEKNKKHYIVVTMGAP 375


>gi|329938089|ref|ZP_08287540.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoaurantiacus
           M045]
 gi|329302578|gb|EGG46468.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoaurantiacus
           M045]
          Length = 467

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 82/258 (31%), Gaps = 26/258 (10%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S IV D     +        R  PAS  KM+    +             ++  S  A 
Sbjct: 123 ARSWIVADAENGDVLAAHNAHWRLPPASTLKMLFADTLLPKFPR---TTEHEVAASDLAG 179

Query: 112 TQNPSKL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
               S +  L +   ++     L +  +S ND        ++G        M   A+++ 
Sbjct: 180 MGAGSSVVPLHKGETYSVRDLWLGVFLKSGNDAVHVL-SAMNGGVAATVQDMRAHAEELR 238

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGI--LLRKNFPQYYKYFSIR----------KFR 218
             +T   +  G     Q+++A D  ++    L +K+F +Y                 K  
Sbjct: 239 ALDTTVVSPDGYDAPKQVSSAYDLTLIARSGLQKKDFREYCATVKTSFPGKTTKSGGKKS 298

Query: 219 YRNRIITNHNKLLNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
            +   I N N+LL           + G+K G T  +G             ++  VM    
Sbjct: 299 RKTFEIRNTNRLLAGDTDVPAYPGLAGVKNGNTTEAGATFTGVAERGGRVLLVTVMNPED 358

Query: 273 --SQERDQKALELITSFL 288
               E  ++A  L+    
Sbjct: 359 HGHNEVYKEAARLLDWGF 376


>gi|283769437|ref|ZP_06342335.1| serine-type D-Ala-D-Ala carboxypeptidase [Bulleidia extructa W1219]
 gi|283103962|gb|EFC05347.1| serine-type D-Ala-D-Ala carboxypeptidase [Bulleidia extructa W1219]
          Length = 315

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 96/237 (40%), Gaps = 32/237 (13%)

Query: 56  SIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----- 109
            +++D+ + ++   K + E  YPASLTKMM +Y+   +++ K+        +S       
Sbjct: 33  YLLLDLEQGEVLEEKGKSEKIYPASLTKMMVVYVALNHIEDKQ----KTAIISPNLLKEL 88

Query: 110 -----AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
                A +  PS+      T  + E  +  +   S  D S    + +  +   F   M+ 
Sbjct: 89  RQQGAAISNYPSQ------TPISYEDLLYGIALPSGADCSITLAKALFPTTDAFVQAMNQ 142

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII 224
           +AK++GM ++ + N +GLH  N  TT  D +    +  KN      + +I+        +
Sbjct: 143 EAKQLGMLHSHFDNVTGLHSPNHYTTLEDLSRFLKVALKNQHFRNYFSAIKYTSKTGITL 202

Query: 225 TNHNKLLNKM--------HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
           ++    L +             G KTGYT  +G  +      K  P + +  G P  
Sbjct: 203 SHT---LYRDIQKTGLKIPGYQGSKTGYTAQAGHCLALWFNQKGHPFLYLATGGPGD 256


>gi|302670789|ref|YP_003830749.1| D-alanyl-D-alanine carboxypeptidase DacA1 [Butyrivibrio
           proteoclasticus B316]
 gi|302395262|gb|ADL34167.1| D-alanyl-D-alanine carboxypeptidase DacA1 [Butyrivibrio
           proteoclasticus B316]
          Length = 387

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 102/237 (43%), Gaps = 23/237 (9%)

Query: 56  SIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----A 110
           +++++++       K+   R  PAS+TK++TL +  E++      L+    +++      
Sbjct: 141 ALLVNLDNGTAVASKEGTVRINPASMTKILTLLVAAEHITD----LDDTFEMTQEIGDFV 196

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            + + S +        T    +   I  S  D +    E+++GS++ F  +M++K  ++G
Sbjct: 197 YSHDCSAVGFSVGEKLTVRDLLYGTILPSGGDAAMCLAEYVAGSQEAFVDMMNDKLTELG 256

Query: 171 MQNT-IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----I 224
           + ++  + N  G+++++   T  D A++     +N    ++  S R +   N +     I
Sbjct: 257 LSDSAHFTNCIGIYNEDHYCTLMDMAMILKAAEEN-NLCHEVLSTRVYTTSNTVEHPEGI 315

Query: 225 TNHNKLLNKMHNID------GIKTGYTRNSGFNIVTS-LRYKDDPIVAVVMGMPTSQ 274
           T  N  + ++ + D      G KTG+   SG    +  +       + V     +S 
Sbjct: 316 TISNWFIRRIEDKDTHGEVVGAKTGFVVQSGCCGASYQISNDGTHYICVTADAWSSW 372


>gi|227500757|ref|ZP_03930806.1| D-alanyl-D-alanine carboxypeptidase [Anaerococcus tetradius ATCC
           35098]
 gi|227217062|gb|EEI82420.1| D-alanyl-D-alanine carboxypeptidase [Anaerococcus tetradius ATCC
           35098]
          Length = 291

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 92/232 (39%), Gaps = 27/232 (11%)

Query: 65  QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYL 120
           ++     DEP   ASLTK+MT  +  E++      L    P+       A   N S    
Sbjct: 52  EVYAKNADEPLPMASLTKIMTALVSLEHITD----LGALAPIDYDAYMDAVNANASMAGF 107

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           +     T    +   I  S  +   +    +SGS   F  LM++KAK++ + NT Y NA 
Sbjct: 108 RANETTTYRDLLYGTILASGAEACDSLAINVSGSVDDFVRLMNDKAKELKLTNTSYANAD 167

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR-----------IITNHNK 229
           G+ D+    +ARD A+L     ++   +   F+ ++F                 I +H  
Sbjct: 168 GMDDEKNYQSARDCAMLIKASLED-GNFRAIFTKKEFLSSPTNEHPDGLHIASTIFSH-- 224

Query: 230 LLNKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
            L         I G K+G T N+G    T  +      + VVMG+  +   D
Sbjct: 225 -LKDYDENGFEIIGGKSGTTDNAGLCWATLAKKDGKEYIVVVMGVAFTNIDD 275


>gi|182437259|ref|YP_001824978.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178465775|dbj|BAG20295.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 323

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 90/206 (43%), Gaps = 13/206 (6%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL----YLKEKTYFTT 128
           +P   AS+TK+MT Y+I +    +       +   + AA ++ S +     +     +T 
Sbjct: 66  KPVPIASVTKVMTAYVILKGHPMRADSHGATVVADRRAADESYSSVETTAPVLAGKEYTQ 125

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            + +  ++  S N+V+     + +G E+ F   M+  A  +GM+ T Y   SG+      
Sbjct: 126 RRLLELMMVPSGNNVARLLARWDAGDEEAFVAKMNRAAAGLGMRATTYTGVSGMETS-TR 184

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYR--NRIITNHNKLLNKMHNIDGIKTGYTR 246
           +TA DQ  L     K+ P + +  +              N NKLL +   + G+KTG + 
Sbjct: 185 STADDQLRLARAAMKD-PVFRQVVATASVTAPGAGATFRNTNKLLGR-DGVIGLKTGSST 242

Query: 247 NSGFNIVTSLRYK----DDPIVAVVM 268
            +G N+V +   K       I+ VV+
Sbjct: 243 PAGGNLVWATTQKVAGASRLILGVVL 268


>gi|302544633|ref|ZP_07296975.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302462251|gb|EFL25344.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces
           himastatinicus ATCC 53653]
          Length = 426

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 89/269 (33%), Gaps = 32/269 (11%)

Query: 48  LHAKPK----YSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNT 102
             A PK     S +V D    ++        R  PAS  KM+    +       + H   
Sbjct: 86  APALPKELSGKSWMVADAESGEVLASHNAHWRLPPASTLKMLFADTVLPKFPKTQKH--- 142

Query: 103 QIPVSKTAATQNPSK-LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
            +  S  A     S  + +KE   +T     L +  RS ND        ++G        
Sbjct: 143 TVRASDLAGMGAGSSLVGVKENLDYTVHDLWLGVFLRSGNDAVHVL-SAMNGGVPATVRD 201

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           M  KAKK+   +T      G  +  Q ++A D  +      +N   + +Y +    ++  
Sbjct: 202 MQAKAKKLNALDTHVVTPDGYDEDGQYSSAYDLTLFARSGLQN-ADFREYCATSTAQFPG 260

Query: 222 --------------RIITNHNKLL-----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
                           I N ++LL          + G+K GYT  +G       +     
Sbjct: 261 EYKKNKKGKKVRMSFGIQNTDRLLTGIDIKPYKGLAGVKNGYTSKAGSTFTGVAQRGKRV 320

Query: 263 IVAVVMGMPTSQ--ERDQKALELITSFLE 289
           ++  VM    S+     ++  +L     +
Sbjct: 321 LLVTVMNPQKSEPYGVYKETAKLFDWGFD 349


>gi|107026153|ref|YP_623664.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           cenocepacia AU 1054]
 gi|116692663|ref|YP_838196.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           cenocepacia HI2424]
 gi|170738088|ref|YP_001779348.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           cenocepacia MC0-3]
 gi|105895527|gb|ABF78691.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Burkholderia cenocepacia AU 1054]
 gi|116650663|gb|ABK11303.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Burkholderia cenocepacia HI2424]
 gi|169820276|gb|ACA94858.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           cenocepacia MC0-3]
          Length = 360

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 96/236 (40%), Gaps = 13/236 (5%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAAT 112
           ++ V+DV+       +     R  AS++K+MT  +  +  +     L  ++    +    
Sbjct: 122 AAYVLDVDSGTPLLARNARTVRPIASISKLMTAVVARDADRPLNGVL--RVTARDRDTIK 179

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S+  L+  +  +  +     +  S N  + A      G    F   M+ +A+++GM+
Sbjct: 180 FTGSR--LQVGSELSRREMFHIALMSSENRAAAALSRDYPGGRAAFVKAMNREARRLGMR 237

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR----IITNHN 228
           +T ++  +GL   + ++TA D A L     ++ P    + +      R      +  N +
Sbjct: 238 HTHFREPTGLS-PHNVSTAEDLARLVGAAAQD-PLIRYFSTDLSTTVRPGDGELVYVNSD 295

Query: 229 KLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            L+  +   I   KTG+   SG  +V  +R K      V++G  T       A+++
Sbjct: 296 PLVRYRRLPIRLQKTGFINESGHGVVMRMRVKGRRETVVLLGAATRAGVSSDAIKI 351


>gi|227874487|ref|ZP_03992662.1| conserved hypothetical protein [Oribacterium sinus F0268]
 gi|227839676|gb|EEJ50131.1| conserved hypothetical protein [Oribacterium sinus F0268]
          Length = 382

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 99/246 (40%), Gaps = 16/246 (6%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLN 101
           S+ SE++A     ++V D+++  + G K       PAS+TK+MTL +  E L   +  + 
Sbjct: 126 SIGSEVNANY---AVVFDLDQGTILGEKNSSVSMNPASMTKVMTLLVAVENLPDLEKKIT 182

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
               +      +  S            +  +  +I  S  D   A  + I+GSE  F  L
Sbjct: 183 ITQDIVDYVKARGASNCGFVAGEQVRVKDLLYGVILPSGADAVLALAKEIAGSEAGFVAL 242

Query: 162 MSNKAKKIGMQNT-IYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKY--FSIRK 216
           M+ KA+ +G+ +   ++NA+GL+        +D   +     +N    +      + I  
Sbjct: 243 MNKKAQDLGLSSDCKFQNATGLYHSTHHMNVKDIGEIMAAAMRNSLAREVLSTENYQIPA 302

Query: 217 FRYRNRIITNHNKLLNKMHNIDGI-------KTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
                  I   N  + ++   D         KTG+ R S F  V+S +  +   + VV G
Sbjct: 303 TNKHGDGIKLTNLFVQRIKGQDTGGASVTMAKTGFVRQSMFCAVSSGKGANGKNLLVVTG 362

Query: 270 MPTSQE 275
             +S  
Sbjct: 363 YSSSTW 368


>gi|307330670|ref|ZP_07609808.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           violaceusniger Tu 4113]
 gi|306883649|gb|EFN14697.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           violaceusniger Tu 4113]
          Length = 544

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 88/268 (32%), Gaps = 29/268 (10%)

Query: 46  SELHAKPK----YSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHL 100
           +   A PK     S +V D     +           PAS  KM+    +   +   K H 
Sbjct: 198 AGAPALPKELSGKSWLVADAQSGDVLASHNAHWQLPPASTLKMLFADTLLPKMPKTKTH- 256

Query: 101 NTQIPVSKTAATQNPSK-LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
             ++ +S        S  + +KE   ++     L +  RS ND        ++G      
Sbjct: 257 --KVQLSDLEGMGEGSSLVGVKENYTYSVHDLWLGVFLRSGNDAVHVL-SAMNGGVPATV 313

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
             M   AK +   +T      G  +K Q+++A D  +      +    + +Y S    ++
Sbjct: 314 SEMQAHAKHLNAGDTHVVTPDGYDEKGQVSSAYDLTLFARSGLQK-ADFREYCSTATAQF 372

Query: 220 RN-----------RIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPI 263
                          I N N+LL          I G+K G T N+G       +     +
Sbjct: 373 PGTFEKGKKKRSSFGIQNTNRLLTGFGVEPYKGIAGVKNGNTTNAGATFTGVAQRGGRVL 432

Query: 264 VAVVMG--MPTSQERDQKALELITSFLE 289
           +  VM      + E  ++   L     +
Sbjct: 433 LVTVMNPQEKEANEVYKETARLFDWGFK 460


>gi|145503045|ref|XP_001437500.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124404650|emb|CAK70103.1| unnamed protein product [Paramecium tetraurelia]
          Length = 458

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 100/259 (38%), Gaps = 41/259 (15%)

Query: 65  QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT-QIPVSKTAATQNPSKLYLKEK 123
           ++  ++  +    AS+TK+MT Y   ++L+ K++ + + +I +   A   + +  +L   
Sbjct: 199 KIYAYQDQQKSEVASITKVMTCYTTLKFLEEKRIDMESIRIKIPGHAECIDGTSAFLNAG 258

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFIS----------------------------GSE 155
                 Q + A++  S ND +      I+                               
Sbjct: 259 GIMNVRQLLFAMMLPSGNDAALVLSYAIAFLKTCDSIQRYCNGHYIDCELEIEKNKFQLR 318

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
            +F  +M+N A+ + M  T Y +  GL+D   ++ A D   L     K   ++ +  + R
Sbjct: 319 TQFLQMMNNHAENLKMDKTNYNSVHGLNDTLNVSCALDIFKLVEECIK-IKEFMEIVNTR 377

Query: 216 KFRY----------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            F+                 N NKLL K    +GIKTG T N+G       +  D   + 
Sbjct: 378 CFKTYAVTEQGNQGTYYKWKNTNKLLKK-EGWEGIKTGITSNAGPCFSGYYKTDDFDAIV 436

Query: 266 VVMGMPTSQERDQKALELI 284
           +V+      +R + A  LI
Sbjct: 437 IVLQSSNMLQRFKDAEILI 455


>gi|170700087|ref|ZP_02891109.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ambifaria IOP40-10]
 gi|170135001|gb|EDT03307.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ambifaria IOP40-10]
          Length = 359

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 93/238 (39%), Gaps = 17/238 (7%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++ V+DV+       +     R  AS++K+MT  +  +        LN  + V+      
Sbjct: 121 AAYVLDVDSGTPLLARNARTVRPIASISKLMTAVVARDA----DRPLNGVLRVTSRDRDT 176

Query: 114 ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S+L +      +  Q     +  S N  + A      G    F   M+ +A+++G
Sbjct: 177 IKFTGSRLPI--GAELSRRQMFHIALMSSENRAAAALSRDYPGGRAAFVKAMNREARRLG 234

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITN 226
           M+ T ++  +GL   + ++TA D A L     ++ P    + +             +  N
Sbjct: 235 MRQTHFREPTGLS-PHNVSTAEDLARLVGAAAQD-PLIRYFSTDTSTTVQAGDGELLYVN 292

Query: 227 HNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            + L+      I   KTG+   SG  +V  +R K      V++G PT       AL++
Sbjct: 293 SDPLVRSGSLPIRLQKTGFINESGHGVVMRMRVKGRRETIVLLGAPTRAGVSSDALKI 350


>gi|213160842|ref|ZP_03346552.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
          Length = 236

 Score =  146 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 18/177 (10%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNK 63
           +     + +  R +Q M     L    IS A             +      S I+ID N 
Sbjct: 21  VVQTMKTTFSARFMQRMALTTALCATFISTAHADDLNIKTMIPGVPQIDAESYILIDYNS 80

Query: 64  NQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPS 116
            ++   +  DE R PASLTKMMT Y+I + +++ K      + V   A        +  S
Sbjct: 81  GKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDAWATGNPVFKGSS 140

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
            ++LK        Q I  +  +S ND   A  +F +GS+  F  LM++    +G++ 
Sbjct: 141 LMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLEK 197


>gi|114321496|ref|YP_743179.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227890|gb|ABI57689.1| murein-DD-endopeptidase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 327

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 92/235 (39%), Gaps = 20/235 (8%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
            L     +++ V  ++  + + G + D P   ASLTK+MT  ++ E        L+  + 
Sbjct: 58  PLQLASVHAAAVY-LDTGERLVGKRADMPAPIASLTKLMTALVVVESGAP----LDEWLT 112

Query: 106 VS--KTAATQNP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           +   + A T+N  S++  +  +     + +   +  S N  +        G    F   M
Sbjct: 113 IVPRQHAVTKNAYSRM--RVDSRLPRGELVRLALMSSENLATYVLAHHHPGGRAAFIAAM 170

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-- 220
           + KAK++GM  T + ++SGL  +N + +A D   L +           Y + R       
Sbjct: 171 NAKAKELGMTQTRFVDSSGLSVEN-VASANDLLKL-LAAANEHEVIRDYSTTRYHTAHFR 228

Query: 221 ----NRIITNHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
                +   N N L+       G+ KTGY   +G  +      +  P+  V +  
Sbjct: 229 GPRYTKGYANTNPLVAHSRWQVGLSKTGYLVEAGRCLAMVAEMEGRPVALVFLNS 283


>gi|308234036|ref|ZP_07664773.1| D-alanyl-D-alanine carboxypeptidase [Atopobium vaginae DSM 15829]
 gi|328943433|ref|ZP_08240898.1| serine-type D-Ala-D-Ala carboxypeptidase [Atopobium vaginae DSM
           15829]
 gi|327491402|gb|EGF23176.1| serine-type D-Ala-D-Ala carboxypeptidase [Atopobium vaginae DSM
           15829]
          Length = 347

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 94/222 (42%), Gaps = 19/222 (8%)

Query: 65  QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK----TAATQNPSKLYL 120
           ++     D    PASL K+MT+Y   +++Q     L+   P+ K        +N S    
Sbjct: 107 EVINDDADVACAPASLVKLMTIYTALQHIQ----SLDQVAPIDKETFQHLLDENASMAGF 162

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
                 T +  +   + RS  + +T      +GS   F   M++ A K+G+  T Y N +
Sbjct: 163 VADEQTTYKDLLYGTLLRSGGECATNLAIHTAGSVDAFVKKMNDNAHKLGLSATHYTNPT 222

Query: 181 GLHDKNQITTARDQAILGILLRKN--FPQYY--KYFSIRKFRYRNRIITNHNKLLNKMH- 235
           GL D NQI+ A D   +     ++  F +    + ++  K     + IT  N +L+ +  
Sbjct: 223 GLDDPNQISCAADVVKVFNACLQDKRFKEILTAQEYTSSKTNQHPKGITMKNNILSHITP 282

Query: 236 ------NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
                  I G K+G T N+G   VT +   +   +  VMG+ 
Sbjct: 283 EEQNGFKILGGKSGTTDNAGLCWVTLVTKNNVDYIVCVMGVA 324


>gi|254248244|ref|ZP_04941564.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia cenocepacia
           PC184]
 gi|124874745|gb|EAY64735.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia cenocepacia
           PC184]
          Length = 326

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 97/238 (40%), Gaps = 17/238 (7%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++ V+DV+       +     R  AS++K+MT  +     ++    LN  + V+      
Sbjct: 88  AAYVLDVDSGTPLLARNARTVRPIASISKLMTAVVA----RNADRPLNGVLRVTARDRDT 143

Query: 114 ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S+  L+  +  +  +     +  S N  + A      G    F   M+ +A+++G
Sbjct: 144 IKFTGSR--LQVGSELSRREMFHIALMSSENRAAAALSRDYPGGRAAFVKAMNREARRLG 201

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR----IITN 226
           M++T ++  +GL   + ++TA D A L     ++ P    + +      R      +  N
Sbjct: 202 MRHTHFREPTGLS-PHNVSTAEDLARLVGAAAQD-PLIRYFSTDLSTTVRPGDGELVYVN 259

Query: 227 HNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            + L+  +   I   KTG+   SG  +V  +R K      V++G  T       A+++
Sbjct: 260 SDPLVRYRRLPIRLQKTGFINESGHGVVMRMRVKGRRETVVLLGAATRAGVSSDAIKI 317


>gi|313903983|ref|ZP_07837363.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Eubacterium
           cellulosolvens 6]
 gi|313471132|gb|EFR66454.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Eubacterium
           cellulosolvens 6]
          Length = 344

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 91/231 (39%), Gaps = 24/231 (10%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-QNPSKL-YLKEKTYFTTEQ 130
           E  YPASLTK+MT  +  E        L   + +++      + +++  L      +   
Sbjct: 116 ERIYPASLTKIMTALLCLESGD-----LERNVVMTEEDFNLGDGAQVSQLDVGDSVSLGD 170

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  ++  S+ND S A    + GS   F  +M+ KA+ +GM  T + N  GLH++N  TT
Sbjct: 171 LLNLVLVYSSNDASKAVARTVGGSVDNFVNMMNQKAQSLGMTGTHFANPHGLHEENHYTT 230

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYR---------NRIITNHNKLLNKMHN----- 236
             D  ++     K  P + +  S                  I  + ++    +++     
Sbjct: 231 LYDIYLMMNYAYK-LPGFSEAASKSSTEIHVSPSDGNPYTFIANSTDEYFTGIYSLPQNV 289

Query: 237 -IDGIKTGYTRNSGFNIVTSLRYK-DDPIVAVVMGMPTSQERDQKALELIT 285
            +   KTG T  +G  +   ++       +AVV G    ++       ++ 
Sbjct: 290 TVLASKTGTTDEAGSCLSLVVQSNYGVKYIAVVTGAQNKEDLYTDMSAVLN 340


>gi|171912390|ref|ZP_02927860.1| Serine-type D-Ala-D-Ala carboxypeptidase [Verrucomicrobium spinosum
           DSM 4136]
          Length = 325

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 112/296 (37%), Gaps = 46/296 (15%)

Query: 31  MGKILFLSII-MISMASELHAKPKYSSIVIDVNKNQM-TGFKQDEPRYPASLTKMMTLYI 88
             K+L ++++   + AS +HA+   S I +DV   ++      +  R    LTKM T  +
Sbjct: 15  FAKLLSVTVVACFAGASTVHAQ--SSVIAVDVYNKKIHVEAGGNLKRPVGGLTKMATALV 72

Query: 89  IFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
             ++ ++ K+ LNT   VS  A   A  NP  L L      T    + A +  S N  +T
Sbjct: 73  ALDWSEATKVPLNTLATVSPEALQIAGMNP--LQLVPGDQITLRDLLYASMMSSDNVAAT 130

Query: 146 AFGEFISGSE-----------KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ--ITTAR 192
               F+                 F   M+  A + GM NT + N  GL +      +TA 
Sbjct: 131 TLALFVGQDINYRRGRTGDPLAAFVTEMNYLAAREGMVNTKFTNPHGLENSRSVPYSTAA 190

Query: 193 DQAILGILLRKNFP-QYYKYFSIRKFRY-RNR-----IITNHNKLLNKMHNIDGIKTGYT 245
           D A L +      P ++Y     R     R        + N N LL  +  IDGIKTG T
Sbjct: 191 DMARLSMYAISRAPFRFYTNQKTRNITVLRGGQPVSVPMQNTNALLG-VGMIDGIKTGNT 249

Query: 246 RNSGFNIVTS-------LRYKDD------PIVAVVMGMPTSQERDQKALELITSFL 288
             SG  ++ S        +           +V VV+G         +   L+    
Sbjct: 250 PRSGGCVIVSEERRGTIAKENGREVLYRHRMVTVVLGSADP---FAETQGLLQQAW 302


>gi|295838564|ref|ZP_06825497.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. SPB74]
 gi|295827061|gb|EDY44744.2| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. SPB74]
          Length = 518

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 91/277 (32%), Gaps = 46/277 (16%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S +V D    ++   +    R  PAS  KM+    +       ++H   Q+ +     
Sbjct: 131 ARSWVVADAESGEILAARNPHWRLAPASTLKMLFADTLLPKFPKDRVH---QVTLKDLDG 187

Query: 112 TQNPSK-LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
               S  + +KE   ++     L +  RS ND        ++G   +    M  +A ++ 
Sbjct: 188 IGEGSSLVGIKEDLPYSVHDLWLGVFLRSGNDAVHVL-SAMNGGVGRTVQDMRARAHELQ 246

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--------- 221
             +T      G   K Q+++A D  +      +N   + +Y S  + ++           
Sbjct: 247 ANDTHVVTPDGYDAKGQVSSAYDLTLFARDGLQNA-DFREYCSTAEAQFPGEFAKKRKKD 305

Query: 222 ----------------------RIITNHNKLL------NKMHNIDGIKTGYTRNSGFNIV 253
                                   I N N+LL           I G+K G T N+G    
Sbjct: 306 KDKDEKKPVDGQAGPGQGPREHFGIQNTNRLLTGAPDLKPYQGIAGVKNGNTTNAGATYT 365

Query: 254 TSLRYKDDPIVAVVMGMPTSQERD--QKALELITSFL 288
              +  D  ++  VM     + +   ++A  L+    
Sbjct: 366 AYAQRGDRKLLVTVMHPDYDETQAVYREAGRLLDWGF 402


>gi|309776078|ref|ZP_07671069.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308916029|gb|EFP61778.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 305

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 97/219 (44%), Gaps = 16/219 (7%)

Query: 56  SIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS--KTAAT 112
            I+I     ++   + +E    PASLTK+M++Y   ++++   L    Q+P S       
Sbjct: 53  YILIRQRDGKVLLHQNEEDEIAPASLTKLMSVYTALQHIE--NLQETVQVPASIFPKLER 110

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           +  S          T E  I   +  S  D        + GSE  F   M+ +A+++G++
Sbjct: 111 EQASMAGFIGNEEVTYEDLIYGALLPSGADACMTLAITLYGSEDAFVAEMNVQAQRLGLK 170

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRK--NFPQYYK--YFSIRKFRYRNRIITNHN 228
           NT ++N +GL ++  +++  D A L     +   F + +   Y+S+      +  +T ++
Sbjct: 171 NTRFRNCTGLDEEGHVSSVSDIATLLKAAVQLPQFTEAFHAPYYSMAPSNKHSEGMTIYS 230

Query: 229 KLLNKMH-------NIDGIKTGYTRNSGFNIVTSLRYKD 260
            + + M         I G KTGYT+ +G  + +  +  +
Sbjct: 231 TMRSTMDQHALSDTAILGGKTGYTKAAGLCLASQAKIGN 269


>gi|297159756|gb|ADI09468.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           bingchenggensis BCW-1]
          Length = 786

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 67/279 (24%), Positives = 121/279 (43%), Gaps = 27/279 (9%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS----KLYLKEKTYFTT 128
           +P   AS+TK+MT Y++ +    K       I +   A  ++ S    ++ + E   +  
Sbjct: 454 KPVPIASVTKVMTAYVVLKEHPLKVSEEGPTIKIDAQAGKESGSEDESRVEVDEGQTYNE 513

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            Q +  L+  S N+++     + SGSE+ F   M++ AK +GM+NT+Y + SG       
Sbjct: 514 LQMLQMLLIPSGNNIARQLARWDSGSEEAFVKKMNDAAKDLGMKNTVYTDPSGFKA-TTK 572

Query: 189 TTARDQAILGILLRKN--FPQYYKYFSIR--KFRYRNRIITNHNKLLNKMHNIDGIKTGY 244
           +TA DQ  L   + K+  F       +IR    +  +  I N+N LL K   + GIKTG 
Sbjct: 573 STASDQLKLARAVMKSEAFRSVVATPNIRIPGLKTPDSKIYNNNNLLVK-PGVVGIKTGS 631

Query: 245 TRNSGFNIVTSLRY---KDDPIV-AVVMGMPTSQERD----QKALELITSFLEKKTLKHQ 296
           +  +G  ++         +  ++  VV+     Q+R     Q +L+L+    +  + K  
Sbjct: 632 STPAGGALMWGAEKTVDGNKRLILGVVL-----QQRAPGILQNSLDLV----QTNSYKLI 682

Query: 297 QTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
              +    S+T  KK  ++  +         + A    T
Sbjct: 683 TAVQDGLTSATVAKKGDVVGHVDDGLGGTTPVVATKDVT 721


>gi|150015827|ref|YP_001308081.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149902292|gb|ABR33125.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 440

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 116/291 (39%), Gaps = 40/291 (13%)

Query: 41  MISMASELHAKP-------------KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           M S A+   AKP               +++ +D+   ++   K  D  RYPAS       
Sbjct: 24  MASYAASNSAKPNTETSSENLPNIKAEAALTMDLETGEIIYCKDADSKRYPAS------- 76

Query: 87  YIIFEYLQSKKLHLN--TQIPVSKTAATQNPSKLYL-------KEKTYFTTEQGILALIT 137
                         +   Q+  +K+A  Q    L L       +     T++  +  L+ 
Sbjct: 77  TTKLLTGLLLAESKDKADQLEYTKSAKEQPEYSLNLNYMHNTMQPGDKVTSDDIMKGLLL 136

Query: 138 RSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            S ND +    + ISG  K FA LM+ KAK++G  N+ +   +GLHD N  TTA D +I+
Sbjct: 137 FSGNDTAYVIADNISGDVKSFAELMNKKAKELGANNSNFVTPNGLHDPNHYTTAYDLSII 196

Query: 198 GILLRKNFPQYYKYFSIRK----FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
                 N P   +   + K     +    I+ N N  L K  N+ G KTG T  +G  + 
Sbjct: 197 MKAAFAN-PWERETMELEKAPITLKNSRIILENRNLTLGKNGNLAG-KTGTTNEAGGCLA 254

Query: 254 TSLRYKDDPIVAVVMGMPTSQERDQKALEL--ITSFLEKKTLKHQQTHRKD 302
           T        ++ +V+   + Q  +    +   + + ++      ++ ++ +
Sbjct: 255 TVYDRDGRQLIGIVL--KSRQIDNADMTKFNDMDAIMDYSYGAKKEVYKAN 303


>gi|159038217|ref|YP_001537470.1| Serine-type D-Ala-D-Ala carboxypeptidase [Salinispora arenicola
           CNS-205]
 gi|157917052|gb|ABV98479.1| Serine-type D-Ala-D-Ala carboxypeptidase [Salinispora arenicola
           CNS-205]
          Length = 403

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 96/264 (36%), Gaps = 17/264 (6%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQS 95
             +++ +   +  A    S +V D+   ++ G     + R PAS+ K     ++      
Sbjct: 72  AGLVVPADTPKAPAVTATSWVVADLASGRVLGGCGPHQHRTPASVQK-----LLLAAALL 126

Query: 96  KKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE--F 150
            +L     + V++          S + +     +T ++  L L+ +S ND +        
Sbjct: 127 PRLDPTKVVEVTREDLDDLDPASSLMGVVAGGRYTVKELWLGLLLQSGNDAANVLARIGG 186

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL--LRKNFPQY 208
            S   +    +M+ +A+++    T     SGL    Q T+A D A++      R +F +Y
Sbjct: 187 GSAGREGGVQVMNEEARRLRANQTHAVTPSGLDGTGQYTSAYDLALIARATFARDDFRRY 246

Query: 209 YKYFSIRKFRYRNRI---ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
               +        R    +T    LL     + G KTG+T  +    V         +  
Sbjct: 247 IATRTAHLPSGPGRSALALTGDETLLGTYPGMLGGKTGFTDLARQTYVGVAERDGRRLAV 306

Query: 266 VVMGMPTSQ-ERDQKALELITSFL 288
            ++G  T+      +A  L+    
Sbjct: 307 TLLGAETAPLGSLGEAAALLNWGF 330


>gi|115358748|ref|YP_775886.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ambifaria AMMD]
 gi|115284036|gb|ABI89552.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
           [Burkholderia ambifaria AMMD]
          Length = 359

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 93/238 (39%), Gaps = 17/238 (7%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++ V+DV+       +     R  AS++K+MT  +  +        LN  + V+      
Sbjct: 121 AAYVLDVDSGTPLLARNARAVRPIASISKLMTAVVARDA----DRPLNGVLRVTSRDRDT 176

Query: 114 ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S+L +      +  Q     +  S N  + A      G    F   M+ +A+++G
Sbjct: 177 IKFTGSRLPI--GAELSRRQMFHIALMSSENRAAAALSRDYPGGRAAFVKAMNREARRLG 234

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITN 226
           M+ T ++  +GL   + ++TA D A L     ++ P    + +             +  N
Sbjct: 235 MRQTHFREPTGLS-PHNVSTAEDLARLVGAAAQD-PLIRYFSTDTSTTVQAGDGELVYVN 292

Query: 227 HNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            + L+      I   KTG+   SG  +V  +R K      V++G PT       A+++
Sbjct: 293 SDPLVRNGSLPIRLQKTGFINESGHGVVMRMRVKGRRETIVLLGAPTRAGVSSDAVKI 350


>gi|227485595|ref|ZP_03915911.1| D-alanyl-D-alanine carboxypeptidase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236461|gb|EEI86476.1| D-alanyl-D-alanine carboxypeptidase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 289

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 97/226 (42%), Gaps = 27/226 (11%)

Query: 65  QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYL 120
           ++    ++E    ASLTK+MT+ +  ++++     L    PV   A       N S    
Sbjct: 48  EVLAKNENERLPMASLTKIMTVRVALKHIRD----LGQIAPVDTDAYYRAVEMNASMAGF 103

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
                 T    + A + RSA + + +    ISGS  KF  LM+ +AK + ++NT Y NA 
Sbjct: 104 NGGETTTYRDLLYATMLRSAGEAADSLAINISGSMDKFVDLMNQEAKDLKLKNTSYANAD 163

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR-----------YRNRIITNHNK 229
           G+ + +   +A+D A+L     K+   +   F+ + F+           Y    I  H  
Sbjct: 164 GMDNPSNYQSAKDCAMLIKDSLKD-GNFRAIFTKKDFKTSPTVNHPDGVYLESTIFYH-- 220

Query: 230 LLNKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
            L K       I G K+G T ++G    T     +   + VVMG+P
Sbjct: 221 -LKKYQQNGFEIIGGKSGTTDDAGLCWATLAVKNNKEYILVVMGVP 265


>gi|254254175|ref|ZP_04947492.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia dolosa AUO158]
 gi|124898820|gb|EAY70663.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia dolosa AUO158]
          Length = 341

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 94/237 (39%), Gaps = 15/237 (6%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAAT 112
           ++ V+DV+       +     R  AS++K+MT  +     +     L  ++    +    
Sbjct: 103 AAYVLDVDSGTPLLARNARTVRPIASISKLMTAVVARRADRPLNGVL--RVTARDRDTIK 160

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S+L +      +  Q     +  S N  + A      G    F   M+ +A+++GM+
Sbjct: 161 FTGSRLPI--GAELSRRQMFHIALMSSENRAAAALSRDYPGGRAAFVGAMNREARRLGMR 218

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHN 228
            T ++  +GL   + ++TA D A L     K+ P    + +      R      +  N +
Sbjct: 219 RTHFREPTGLS-PHNVSTADDLARLVGAAAKD-PLIRYFSTDTSTTVRAGDDELLYVNSD 276

Query: 229 KLL--NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            L+   ++  I   KTG+   SG  +V  +R        V++G PT       AL++
Sbjct: 277 PLVRYGRLP-IRLQKTGFINESGHGVVMRMRVNGRRETIVLLGAPTRAGVSSDALKI 332


>gi|90413839|ref|ZP_01221826.1| Hypothetical D-alanyl-D-alanine endopeptidase [Photobacterium
           profundum 3TCK]
 gi|90325150|gb|EAS41653.1| Hypothetical D-alanyl-D-alanine endopeptidase [Photobacterium
           profundum 3TCK]
          Length = 298

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 60/300 (20%), Positives = 117/300 (39%), Gaps = 33/300 (11%)

Query: 32  GKILFLSIIMISMASELHAK-----------PKYSSIVIDVNKNQMTGFKQDEPRYP-AS 79
             +   S++ +S+A+  HA               S+ V D+   +    K      P AS
Sbjct: 4   ALLFIFSLVSVSIATSAHATTAKLDPNNIQTASVSTYVTDLKSGKTLYKKNQNVVMPLAS 63

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIP---VSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           +TK+MT  +  +     KL L+ +I    + K       +++ ++  +  +  + I   +
Sbjct: 64  ITKLMTAMVTLDA----KLPLDEKITFKPIDKKRMYNGYTRIRME--SRLSRGETIHIAL 117

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S N  + A      G    F   M+ KAK +GM NT + ++SGL +   ++TA D   
Sbjct: 118 MSSENLAAAALAGNYPGGYDAFIKAMNAKAKALGMTNTRFVDSSGL-NPKNVSTASDINK 176

Query: 197 LGILLRKNFPQYYKYFSIR----KFRYRNRII--TNHNKL-LNKMHNIDGIKTGYTRNSG 249
           +     K + +  KY +       F      +  TN N L   K  +++  KTGY   +G
Sbjct: 177 MAKAAYK-YAKIRKYSTTPVHTVYFTKPKYKLGYTNTNVLARGKKWDVEMTKTGYLDIAG 235

Query: 250 FNIVTSLRYKDDPIVAVVMGMP---TSQERDQKALELITSFLEKKTLKHQQTHRKDNLSS 306
             +    +     I+ V++      T      +  + + +    K     + +++  L+ 
Sbjct: 236 HCLTMITKIDGKEILMVMLDAQGKLTPIGDAGRIKKWLQTGNSGKISDSAKNYQQVKLAD 295


>gi|172063483|ref|YP_001811134.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ambifaria MC40-6]
 gi|171996000|gb|ACB66918.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ambifaria MC40-6]
          Length = 359

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 93/237 (39%), Gaps = 17/237 (7%)

Query: 56  SIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ- 113
           + ++DV+       +     R  AS++K+MT  +  +        LN  + V+       
Sbjct: 122 AYLLDVDSGTPLLARNARTVRPIASISKLMTAVVARDA----DRPLNGVLRVTSRDRDTI 177

Query: 114 --NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S+L +      +  Q     +  S N  + A      G    F   M+ +A+++GM
Sbjct: 178 KFTGSRLPI--GAELSRRQMFHIALMSSENRAAAALSRDYPGGRAAFVKAMNREARRLGM 235

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNH 227
           ++T ++  +GL   + ++TA D A L     ++ P    + +             +  N 
Sbjct: 236 RHTHFREPTGLS-PHNVSTAEDLARLVGAAAQD-PLIRYFSTDTSTTVQAGDGELLYVNS 293

Query: 228 NKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           + L+      I   KTG+   SG  +V  +R K      V++G PT       A+++
Sbjct: 294 DPLVRNGSLPIRLQKTGFINESGHGVVMRMRVKGRRETIVLLGAPTRAGVSSDAVKI 350


>gi|21222827|ref|NP_628606.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces coelicolor A3(2)]
 gi|7635949|emb|CAB88446.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           coelicolor A3(2)]
          Length = 832

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 114/248 (45%), Gaps = 19/248 (7%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN----PSKLYLKEKTYFTT 128
           +P   AS+ K+MT Y++      K      +I + + A  Q+     S + +      + 
Sbjct: 506 KPVPIASVAKVMTAYLVLRDHPLKSGAEGPKIKIDQAAEDQSQAGQESTVDVFAGDSISQ 565

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            + + A++  SAN+V+     + +GSEK F   M+  AK +GM NT Y + SGL++   +
Sbjct: 566 REALQAILIASANNVARLLARWDAGSEKAFVEKMNGAAKDLGMTNTTYTDPSGLNN-TTV 624

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFR-YRNRIITNHNKLLNKMHNIDGIKTGYTRN 247
           +TA DQ  L     K  P + +  ++  +  Y+     N N+L+   + + GIKTG T +
Sbjct: 625 STAVDQVKLAKAAMKE-PAFREVAAMMSYNDYKGENHGNWNQLVGH-NGVVGIKTGTTTS 682

Query: 248 SGFNIVTSLRY---KDDPIV--AVV----MGMPTSQERDQKALELITSFLEKKTLKHQQT 298
           +  N+V + +     +   +  AVV    +G          + ELI +   + TLK    
Sbjct: 683 ALGNLVFAAKKEVGGETRTIVGAVVRQPDVGGGILDAALDASDELIRAA--QDTLKSSTI 740

Query: 299 HRKDNLSS 306
            +K ++  
Sbjct: 741 IKKGSVVG 748


>gi|29829956|ref|NP_824590.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces avermitilis
           MA-4680]
 gi|29607066|dbj|BAC71125.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           avermitilis MA-4680]
          Length = 447

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 85/259 (32%), Gaps = 28/259 (10%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S IV D     +        R  PAS  KM+    +         +   ++  S  A 
Sbjct: 101 ARSWIVADAESGDVLAAHNAHWRLPPASTLKMLFADTLLPKFPK---NTEHKVVPSDLAG 157

Query: 112 TQNPSKL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
               S +  +KE   +T     L +  RS ND          G  +     M   A+++ 
Sbjct: 158 MGAGSSVVGIKENETYTVHDLWLGVFLRSGNDAVHVLSAMNKGVGQT-VEDMQEHARELQ 216

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGI--LLRKNFPQYYKYF----------SIRKFR 218
             +T   +  G     Q+++A D  +     L +K+F +Y                 K  
Sbjct: 217 ALDTHVVSPDGYDAPRQVSSAYDLTLFARSGLQKKDFREYCATVRAQFPGETTKKKGKTT 276

Query: 219 YRNRIITNHNKLL------NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
             +  I N N+LL           I G+K G T N+G             ++  VM  P 
Sbjct: 277 RGSFEIQNTNRLLAGDSDITPYQGIAGVKNGNTSNAGATFTGVAERNGKVLLVTVMN-PE 335

Query: 273 SQERDQ---KALELITSFL 288
             E ++   +  +L+    
Sbjct: 336 KNEHNEVYKETAKLLDWGF 354


>gi|145594991|ref|YP_001159288.1| Serine-type D-Ala-D-Ala carboxypeptidase [Salinispora tropica
           CNB-440]
 gi|145304328|gb|ABP54910.1| Serine-type D-Ala-D-Ala carboxypeptidase [Salinispora tropica
           CNB-440]
          Length = 386

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 97/270 (35%), Gaps = 19/270 (7%)

Query: 32  GKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIF 90
             +    ++  +      A    S IV D+   Q+ G     E R PAS+ K++   +  
Sbjct: 49  AALATTGLVTPAGTPSAPAVTATSWIVADLGSGQVLGGCGPHEHRTPASVQKLLLA-VAL 107

Query: 91  EYLQSKKLHLNTQIPVSK---TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
                 +L   T + V++          S + + E   +T E+  L L+  S ND +   
Sbjct: 108 ----LPRLDPTTVVEVTRDDLHDLDPASSLMGVVEGGRYTVEELWLGLLLESGNDAANVL 163

Query: 148 GEFISGSEKKF--AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
                G   +     +M+++A ++    T     SGL    Q T+A D A++     +  
Sbjct: 164 ARLGGGGAGRPGGVQVMNDEAGRLRASQTHAVTPSGLDGAGQYTSAYDLALIARAAFER- 222

Query: 206 PQYYKYFSIRKFRYRNRI------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
             + +Y + R     +        +T  N LL     + G KTG+T  +    V      
Sbjct: 223 DDFRRYIATRTASLPSTPGRSALALTGDNTLLGSYPGMLGGKTGFTDLARQTYVGVAERD 282

Query: 260 DDPIVAVVMGMPTSQ-ERDQKALELITSFL 288
              +   ++G   +      +A  L+    
Sbjct: 283 GRTLAVTLLGAENAPLGSLGEATALLNWGF 312


>gi|300786276|ref|YP_003766567.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei
           U32]
 gi|299795790|gb|ADJ46165.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei
           U32]
          Length = 307

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 97/227 (42%), Gaps = 17/227 (7%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL----YLKEKTYFTTE 129
           P   AS+TK+MT Y++ +           ++ V + A  +  S       ++    F+  
Sbjct: 74  PVPIASVTKVMTAYVVLKDHPLGADEAGPEVTVDEQAEAEATSAEESSAPVRAGRRFSER 133

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
             +  ++  S N+V+     + +GS+  F   M+ +A  +GM +T Y  ASG+ D    +
Sbjct: 134 DLLALMLVPSGNNVARLLARWDAGSQDAFVAKMNREAAALGMTSTSYTGASGVEDS-TTS 192

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRN 247
           TA DQ  L     KN P      +    R       + N N LL     + G+KTG +  
Sbjct: 193 TATDQLRLAREAMKN-PVIRAIAATPSLRIDGVPGAVVNTNTLLGH-DGVIGLKTGSSTA 250

Query: 248 SGFNIVTSLR-YKDDPIVAVVM-----GMPTSQERD--QKALELITS 286
           +G  ++ + +      I+ VV+     G P +  R   + + +LI +
Sbjct: 251 AGGALMWAAQARDGALILGVVLHQSPGGTPAAGLRAALENSQKLIAA 297


>gi|302560107|ref|ZP_07312449.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus
           Tu4000]
 gi|302477725|gb|EFL40818.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus
           Tu4000]
          Length = 471

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 13/226 (5%)

Query: 52  PKYSSIVIDVNK-NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           P      +DV+         + +P   AS+ K+MT Y+I      K       I V +TA
Sbjct: 122 PAKGQAALDVDGIGTFGSSGEQKPVPIASVAKVMTAYLILRDHPLKSGADGPTIDVDQTA 181

Query: 111 ATQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
             Q    + S + +      +  + + A++  SAN+V+     + +GSEK F   M+  A
Sbjct: 182 EKQSSAGDESTVNVTAGDKISQREALEAILIASANNVARLVARWDAGSEKAFVEKMNEAA 241

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-RYRNRIIT 225
           K +GM +T Y + SGL++   ++TA DQ  L     +  P + +  ++ ++  Y+     
Sbjct: 242 KDLGMTDTTYTDPSGLNN-TTVSTAVDQVKLAKAAMEQ-PAFREVAAMMEYIDYKGVKHG 299

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK----DDPIVAVV 267
           N N+L+   +N+ GIKTG T ++  N+  + +         I+  V
Sbjct: 300 NWNRLVGH-NNVVGIKTGTTTSALGNLSFAAKKDVDGETRRIIGAV 344


>gi|256786097|ref|ZP_05524528.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
          Length = 577

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 114/248 (45%), Gaps = 19/248 (7%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN----PSKLYLKEKTYFTT 128
           +P   AS+ K+MT Y++      K      +I + + A  Q+     S + +      + 
Sbjct: 251 KPVPIASVAKVMTAYLVLRDHPLKSGAEGPKIKIDQAAEDQSQAGQESTVDVFAGDSISQ 310

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            + + A++  SAN+V+     + +GSEK F   M+  AK +GM NT Y + SGL++   +
Sbjct: 311 REALQAILIASANNVARLLARWDAGSEKAFVEKMNGAAKDLGMTNTTYTDPSGLNN-TTV 369

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFR-YRNRIITNHNKLLNKMHNIDGIKTGYTRN 247
           +TA DQ  L     K  P + +  ++  +  Y+     N N+L+   + + GIKTG T +
Sbjct: 370 STAVDQVKLAKAAMKE-PAFREVAAMMSYNDYKGENHGNWNQLVGH-NGVVGIKTGTTTS 427

Query: 248 SGFNIVTSLRY---KDDPIV--AVV----MGMPTSQERDQKALELITSFLEKKTLKHQQT 298
           +  N+V + +     +   +  AVV    +G          + ELI +   + TLK    
Sbjct: 428 ALGNLVFAAKKEVGGETRTIVGAVVRQPDVGGGILDAALDASDELIRAA--QDTLKSSTI 485

Query: 299 HRKDNLSS 306
            +K ++  
Sbjct: 486 IKKGSVVG 493


>gi|307324182|ref|ZP_07603390.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           violaceusniger Tu 4113]
 gi|306889913|gb|EFN20891.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
           violaceusniger Tu 4113]
          Length = 886

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 117/269 (43%), Gaps = 20/269 (7%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTT 128
           +P   AS+TK+MT Y++ +    K      +I +   AA    + + S+  +KE   FT 
Sbjct: 557 KPVPIASVTKVMTAYVVLKDHPLKGDAEGPKITIDAQAAEEAKSADESRAAVKEGQTFTQ 616

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            Q +  L+  S+N+++     + +GS   F   M++ A+ +GM+ T Y + SGL  ++  
Sbjct: 617 HQLLQLLLINSSNNIARLLARWDAGSLDAFVKKMNDAAEGLGMKQTTYTDPSGLK-ESTK 675

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRN---RIITNHNKLLNKMHNIDGIKTGYT 245
           +TA DQ  L     ++   +    +           RI  N+N L+     + GIKTG +
Sbjct: 676 STAADQLKLAKAAMQS-EAFRAVVATPNAEIPGLGDRIYNNNNLLVK--PGVIGIKTGSS 732

Query: 246 RNSGFNIVTSLRY----KDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRK 301
             +G  ++         K   I+ VV+     ++R    L+      +  + K   T + 
Sbjct: 733 TPAGGALMWGAVRTIDGKKQRILGVVL-----EQRATTTLDASLQLAQTNSYKLISTLQD 787

Query: 302 DNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
              S+T +KK  ++ ++         + A
Sbjct: 788 ALTSATVIKKGDVVGQIDDGLGGTTPVVA 816


>gi|171315671|ref|ZP_02904905.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ambifaria MEX-5]
 gi|171099203|gb|EDT43976.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
           ambifaria MEX-5]
          Length = 359

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 93/238 (39%), Gaps = 17/238 (7%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++ V+DV+       +     R  AS++K+MT  +  +        LN  + V+      
Sbjct: 121 AAYVLDVDSGTPLLARNARTVRPIASISKLMTAVVARDA----DRPLNGVLRVTSRDRDT 176

Query: 114 ---NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                S+L +      +  Q     +  S N  + A      G    F   M+ +A+++G
Sbjct: 177 IKFTGSRLPI--GAELSRRQMFHIALMSSENRAAAALSRDYPGGRAAFVKAMNREARRLG 234

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITN 226
           M+ T ++  +GL   + ++TA D A L     ++ P    + +             +  N
Sbjct: 235 MRQTHFREPTGLS-PHNVSTAEDLARLVGAAAQD-PLIRYFSTDTSTTVQAGDGELLYVN 292

Query: 227 HNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            + L+      I   KTG+   SG  +V  +R K      V++G PT       AL++
Sbjct: 293 SDPLVRNGRLPIRLQKTGFINESGHGVVMRMRVKGRRETIVLLGAPTRAGVSSDALKI 350


>gi|145529840|ref|XP_001450703.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124418325|emb|CAK83306.1| unnamed protein product [Paramecium tetraurelia]
          Length = 490

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 57/285 (20%), Positives = 106/285 (37%), Gaps = 47/285 (16%)

Query: 53  KYSSIVID-VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT-QIPVSKTA 110
             S IV D +    +   K ++    AS+TK+MT Y+    ++   L +   ++ V+K +
Sbjct: 204 AKSFIVYDCIEHKTVLKRKSNKRVEVASITKIMTFYVTLLTIELYNLDVKQIKVKVTKKS 263

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS------------------ 152
           +    +   LK     + E  +  L+  S ND +    + I                   
Sbjct: 264 SETIGTTAELKYNDILSMEDLLYGLMLPSGNDAAVLIAQAIGTIILFNQQNKRLDLKLID 323

Query: 153 -------------------GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
                                 + F   M+  + +IG QNT +    GL +++  +   D
Sbjct: 324 IEQLSAEGYFYNHEFRFQYCPIEVFIKHMNKYSSQIGQQNTQFACVHGLANEDNYSCCND 383

Query: 194 QAILGILLRKNFPQYYKYFSIRKFR----YRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
              L I   K +  +    S +++     Y+     N NKLL+K     GIKTG T ++G
Sbjct: 384 IITLSIECLK-YELFQTVISSKEYVTKSLYKQYEWKNTNKLLDK--GFFGIKTGITESAG 440

Query: 250 FNIVTSLRYKDDP-IVAVVMGMPTSQERDQKALELITSFLEKKTL 293
             + ++ R  +    + +V+       R    + L+     KK +
Sbjct: 441 PCLASAYRSNEMDYYIIIVLNCKHMNMRFDDTIILLQHAKLKKMM 485


>gi|328887221|emb|CCA60460.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces venezuelae ATCC
           10712]
          Length = 315

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 105/238 (44%), Gaps = 13/238 (5%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           +++   +    K   S++ ++     +       P   ASLTK+MT ++I E    K   
Sbjct: 48  VVVDDGALPWPKGGQSAVALE-GSGPVGTRGDGRPVPIASLTKVMTAHVILEEHPLKPGE 106

Query: 100 LNTQIPVSKTAATQ----NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
               I V + AA +      S + L+    ++  Q +  L+  S N+V+     + SG++
Sbjct: 107 SGPMIEVDRQAAYEVGVGGESTVPLQAGRRYSQRQLLEMLLIPSGNNVARLLARWDSGTQ 166

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
           + FA  M   A  +GM+++ Y  ASG+ +    +TA DQ  L     KN   + +    R
Sbjct: 167 EAFAEKMQRTAGGLGMKDSTYTGASGI-EVTTTSTAADQLALARKAMKN-AVFREIVGTR 224

Query: 216 KFRYRN-RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS--LRYKD--DPIVAVVM 268
                    ITN N LL+    + GIKTG +  +G N++ +  +R       +V  VM
Sbjct: 225 SVTVPGVGTITNTNPLLDT-PGVVGIKTGSSTPAGGNLLWACEVRVGGATRLLVGAVM 281


>gi|291522262|emb|CBK80555.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus catus GD/7]
          Length = 327

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 91/237 (38%), Gaps = 21/237 (8%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQS--KKLHLNTQIPVSKTAATQNPSKLYLKEK 123
           +T         PAS+TK++T  +  E +Q   +++ L   + V    A         K  
Sbjct: 91  ITAKNIYTQMPPASITKILTALVALENVQDLDQEVTLTDDVNVDVADAQV----CGFKAG 146

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFI-SGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
              T +  +  ++  S ND + A    +  G    F   M+ +A+++G   T +   +GL
Sbjct: 147 DKMTLKTLLYCMLIYSGNDAANAVASAVSGGDIPAFCDKMNAEAQRLGATQTHFVTPNGL 206

Query: 183 HDKNQITTARDQAILGILLRK-------NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
            D +  TTA D  ++     K           +Y     R  +   +   + N  L    
Sbjct: 207 DDPDHYTTAYDLYLIFNECLKYDLFKDAIHQAHYTAVFTRNGQEVQQTYDSTNYYLLGNK 266

Query: 236 ------NIDGIKTGYTRNSGFNIVTSLRYK-DDPIVAVVMGMPTSQERDQKALELIT 285
                 +I G KTG T N+G  ++  +     +  ++V++G P          +L++
Sbjct: 267 TPPEGVSIIGGKTGTTDNAGLCLILYVEDGSGNGYISVLLGCPDKDTLYSSMSKLLS 323


>gi|289769992|ref|ZP_06529370.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
 gi|289700191|gb|EFD67620.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
          Length = 542

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 114/248 (45%), Gaps = 19/248 (7%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN----PSKLYLKEKTYFTT 128
           +P   AS+ K+MT Y++      K      +I + + A  Q+     S + +      + 
Sbjct: 216 KPVPIASVAKVMTAYLVLRDHPLKSGAEGPKIKIDQAAEDQSQAGQESTVDVFAGDSISQ 275

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            + + A++  SAN+V+     + +GSEK F   M+  AK +GM NT Y + SGL++   +
Sbjct: 276 REALQAILIASANNVARLLARWDAGSEKAFVEKMNGAAKDLGMTNTTYTDPSGLNN-TTV 334

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFR-YRNRIITNHNKLLNKMHNIDGIKTGYTRN 247
           +TA DQ  L     K  P + +  ++  +  Y+     N N+L+   + + GIKTG T +
Sbjct: 335 STAVDQVKLAKAAMKE-PAFREVAAMMSYNDYKGENHGNWNQLVGH-NGVVGIKTGTTTS 392

Query: 248 SGFNIVTSLRY---KDDPIV--AVV----MGMPTSQERDQKALELITSFLEKKTLKHQQT 298
           +  N+V + +     +   +  AVV    +G          + ELI +   + TLK    
Sbjct: 393 ALGNLVFAAKKEVGGETRTIVGAVVRQPDVGGGILDAALDASDELIRAA--QDTLKSSTI 450

Query: 299 HRKDNLSS 306
            +K ++  
Sbjct: 451 IKKGSVVG 458


>gi|146181846|ref|XP_001023475.2| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila]
 gi|146144034|gb|EAS03230.2| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila SB210]
          Length = 564

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/314 (19%), Positives = 115/314 (36%), Gaps = 67/314 (21%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           + +   ++ AK   +  + D +  +    K     R  ASLTK+MT Y + E+ +   L 
Sbjct: 257 ITAFPPQVTAK---AWALFDGSSGKFIDGKCVHNQREVASLTKIMTCYTVIEFFEQI-LQ 312

Query: 100 LNTQ---IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS---- 152
            + +   + VS  A+  N +   LK     +    +  L+  S ND +    E +     
Sbjct: 313 KDMKRVFVRVSSRASQTNGTSARLKYNMIISIWDLLYGLMLPSGNDSAVCLAENVGSLMY 372

Query: 153 ---------------------------------GSEKKFAILMSNKAKKIGMQNTIYKNA 179
                                               ++F + M+  A    + NT Y N 
Sbjct: 373 LYYVKQDNEILQDEFIYDEQLLHKKLELDSTPNTGMQRFLVQMNINAVNFELINTNYSNP 432

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR----KFRYRNR---------IITN 226
            GL +    ++A D A +     K    + K  + +    + + +N+            N
Sbjct: 433 HGLKNPLNKSSAYDVAKISCNAMK-LESFKKIVTTKIHTAQVKVKNQQGLYENVSWTWEN 491

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD------DPIVAVVMGMPTSQERDQKA 280
            NKLL+K     GIKTG T  +G  + + +++KD        ++ V++   +   R  + 
Sbjct: 492 TNKLLDK--GWSGIKTGITDAAGPCLASCIKFKDPINEINRYLIIVILSAQSMDIRWSEC 549

Query: 281 LELITSFLEKKTLK 294
            ++    +E   L+
Sbjct: 550 QKIAAWAVENYDLE 563


>gi|326442983|ref|ZP_08217717.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 415

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 102/273 (37%), Gaps = 22/273 (8%)

Query: 32  GKILFLSIIMISMASELHAKPK----YSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTL 86
           G  L ++   +S+ +     PK     S +V D    ++        R  PAS  KM+  
Sbjct: 59  GARLGVAGTQVSLGTGAPVLPKDLTARSWVVADAESGEVLAAHNPHWRLAPASTLKMLFA 118

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
             +   L     H   ++   + A    N S + ++E   ++     L +  RS ND   
Sbjct: 119 DTLLPKLPKATTH---KVSADELADVGLNSSVVGVEEDMTYSIHDLWLGVFLRSGNDAVH 175

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI--LLRK 203
                ++G   K    M   A+++   +T   +  G     Q+++A D  ++    L +K
Sbjct: 176 VL-SALNGGIDKTVQDMQAHAEELQALDTQVVSPDGYDAAGQVSSAYDLTLIARSGLQKK 234

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKL------LNKMHNIDGIKTGYTRNSGFNIVTSLR 257
           +F +Y        F  + +I+T  N+L      L+    + G+K G T ++G        
Sbjct: 235 DFREYSATM-TADFPGKGQIVT-TNRLLTGDFGLDPYKGLAGVKNGSTTHAGATFTGVAE 292

Query: 258 YKDDPIVAVVMGMPTSQERD--QKALELITSFL 288
                ++  VM   + +     ++   L+    
Sbjct: 293 RGGRVLLVTVMNPESEENNAVYKETERLLDWGF 325


>gi|50954852|ref|YP_062140.1| D-alanyl-D-alanine endopeptidase [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951334|gb|AAT89035.1| D-alanyl-D-alanine endopeptidase [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 394

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 102/278 (36%), Gaps = 27/278 (9%)

Query: 39  IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYL----- 93
           ++     S + A P Y                 D     AS+TK +T  ++ +       
Sbjct: 43  LVWPGYGSAVIAAPDYP--------GATAFDGSDASLPIASVTKAITALVVLDKKPLSGS 94

Query: 94  QSK-KLHLNTQ-IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
           +   ++    + + +      +  S   +K  T  T ++ + A++  SAN+ + +   + 
Sbjct: 95  EQGPEISFTQKDVDIWNQVVGEGGSWAPVKAGTSMTEKEALTAMLLPSANNYAISLANWA 154

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKY 211
            GS   +    ++   K G   T   +  GL D   ++T +D   +G L+  + P     
Sbjct: 155 FGSTGAYVSAANDWLGKKGFSGTKITSPDGL-DPGNVSTTKDLIGIGKLVL-DSPALSSI 212

Query: 212 FSIRKFRYRN-RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR----YKDDPIVAV 266
            S +           N N LL  +  +DGIKTG T  +GF ++ S           +V  
Sbjct: 213 VSKKTATLPGAGDQDNTNSLLG-VEGVDGIKTGNTDEAGFCLLFSAEVPVGKAKVRVVGA 271

Query: 267 VMGMPTSQERDQKALELI----TSFLEKKTLKHQQTHR 300
           V+G  +         EL+      F E + +K  Q   
Sbjct: 272 VLGADSRDTLWANVKELLQSMRNGFHEVEAVKAGQVFG 309


>gi|145523692|ref|XP_001447679.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124415201|emb|CAK80282.1| unnamed protein product [Paramecium tetraurelia]
          Length = 458

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 99/259 (38%), Gaps = 41/259 (15%)

Query: 65  QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT-QIPVSKTAATQNPSKLYLKEK 123
           ++  F+  +    AS+TK+MT Y   ++L+ K++ +   +I +   A   + +  +L   
Sbjct: 199 KIYAFQDQQKSEVASITKVMTCYTTLKFLEEKRIDMEAIRIKIPGHAECIDGTSAFLNAG 258

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFIS----------------------------GSE 155
                +Q + A++  S ND +      I+                               
Sbjct: 259 GIMNIKQLLFAMMLPSGNDAALVLSYAIAFLKTCDNIQRYFNGHFIDCELEIEKNKFQLR 318

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
            +F  +M+N A+ + M  T Y +  GL+D   ++ A D   L     K   ++ +  + R
Sbjct: 319 TQFLQMMNNHAENLKMDKTNYNSVHGLNDALNVSCALDIFKLVEDCIK-IKEFMEIVNTR 377

Query: 216 KFRY----------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            F+                 N NKLL K     GIKTG T N+G       +  D   + 
Sbjct: 378 CFKTYAMTEQGKQGTYYKWKNTNKLLKK-EGWQGIKTGITSNAGPCFSGYYKTDDFDAIV 436

Query: 266 VVMGMPTSQERDQKALELI 284
           +V+      +R + A  LI
Sbjct: 437 IVLQSSNMLQRFKDAEILI 455


>gi|323225525|gb|EGA09755.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323251307|gb|EGA35179.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
          Length = 195

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 18/173 (10%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNKNQMT 67
             + +  R +Q M     L    IS A             +      S I+ID N  ++ 
Sbjct: 1   MKTTFSARFMQRMALTTALCAAFISTAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVL 60

Query: 68  GFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYL 120
             +  DE R PASLTKMMT Y+I + +++ K      + V   A        +  S ++L
Sbjct: 61  AEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDAWATGNPVFKGSSLMFL 120

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           K        Q I  +  +S ND   A  +F +GS+  F  LM++    +G++N
Sbjct: 121 KPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKN 173


>gi|169839592|ref|ZP_02872780.1| D-alanyl-D-alanine carboxypeptidase [candidate division TM7
           single-cell isolate TM7a]
          Length = 203

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 91/195 (46%), Gaps = 6/195 (3%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMT 85
           ++ +++  + FL++   S A   +     + ++ DVN N +        R  AS+TK+MT
Sbjct: 10  KSKKIVLSMAFLAMSAFSFADGENYHDYKALLIGDVNGNIIKEDNSLAVRPLASVTKIMT 69

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
             +  + ++S ++  + ++ VS  AA+  P  + L     +T    + A I +S+N+ + 
Sbjct: 70  SILTLDKIKSGQISYDDKVTVSSKAASV-PYGVKLTAGKQYTVRDLLKATIIKSSNNAAY 128

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT-----ARDQAILGIL 200
           A  E++ G    F   M+ KA+  G+ +  Y + +GL      +      ARD   L  +
Sbjct: 129 ALAEYVGGDVPSFVRSMNEKARSYGLDSLRYCSPNGLPPSYTGSCMDQGNARDLYKLAQI 188

Query: 201 LRKNFPQYYKYFSIR 215
             K++  Y  +  I+
Sbjct: 189 TLKDYSDYLNFSKIK 203


>gi|145508567|ref|XP_001440233.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124407439|emb|CAK72836.1| unnamed protein product [Paramecium tetraurelia]
          Length = 456

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 63/290 (21%), Positives = 114/290 (39%), Gaps = 53/290 (18%)

Query: 53  KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ---IPVSK 108
             S IV D  +N++    K ++    ASLTK+MT YI    +   K +LN++   + V+K
Sbjct: 168 AKSFIVYDCIENRIVSQRKCNKRMEIASLTKIMTFYITM--VILAKFNLNSKEIRVKVTK 225

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS---------------- 152
            A+    +   LK     T +  +  L+  S ND +    + I                 
Sbjct: 226 KASETIGTTSELKYNDILTIQDLLYGLMLPSGNDAAILIAQTIGTIILFYESNKYLDSTL 285

Query: 153 ---------------------GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
                                   + F   M+  +  +G QNT +    GL +++  ++ 
Sbjct: 286 IDIEQMSAEGHYYNVELKTQLCPIEIFISKMNYYSNLMGQQNTQFACVHGLANEDNYSSC 345

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKF------RYRNRIITNHNKLLNKMHNIDGIKTGYT 245
            D  +L +   K +  +++  S +++        +     N NKLL K     GIKTG T
Sbjct: 346 HDIVLLSLECLK-YDIFHQVISCKEYISKSLNNNKYYEWKNTNKLLEK--GFFGIKTGIT 402

Query: 246 RNSGFNIVTSLRYKDDP-IVAVVMGMPTSQERDQKALELITSFLEKKTLK 294
            ++G  + ++ R  +    + VV+     Q R  + + L+     KK+L 
Sbjct: 403 DSAGPCLASAYRSNEKEYYIIVVLSCKNLQLRFDETISLLQHAKYKKSLN 452


>gi|282600912|ref|ZP_05980106.2| serine-type D-Ala-D-Ala carboxypeptidase family protein
           [Subdoligranulum variabile DSM 15176]
 gi|282570823|gb|EFB76358.1| serine-type D-Ala-D-Ala carboxypeptidase family protein
           [Subdoligranulum variabile DSM 15176]
          Length = 445

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 65/309 (21%), Positives = 124/309 (40%), Gaps = 43/309 (13%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASE-----LHAKP----KYSSIVIDVNKNQMTGFKQ- 71
           + ++R   L   ++   ++++ +A+E     L A        +  V++++ N +   K  
Sbjct: 1   MLMKRFWALFCTVVLAFVLVLPVAAEGESSALSADAPELTAPAGYVVNLDTNIVVYDKNS 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--------ATQNPSKLYLKEK 123
           D     ASLTKMMT  ++ E  Q     L+T I V+  +         T N S   +++ 
Sbjct: 61  DTQLQAASLTKMMTCLLMLEQYQD---QLDT-ITVTAPSYIYDLIWEKTTNASTADIRKG 116

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNTIYKNASGL 182
              T    + A++  SAN+ +    +++ G S   F  +M+N+A  IG   T + +  GL
Sbjct: 117 ETQTLRNLLYAMLLPSANEAAYIVADYMGGGSIDNFVAMMNNEAAAIGCTGTTFADPCGL 176

Query: 183 HDKNQITTARDQAILGILL--------RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
            D+  +TTA+D  ++   L              Y    + R       II N NK+++  
Sbjct: 177 -DERNVTTAKDAYLILRALTAYDIVGTVMGTASYDMGTNDRYTTPGTYIIQNTNKMISNT 235

Query: 235 H----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ------KALELI 284
                   G KTG       N         +  ++V++ +P + + +       +   L+
Sbjct: 236 SYYRAYTKGGKTGSLGE-WQNFAGWHSQDGENYISVLLNVPNATDEEGGRPALLETGTLM 294

Query: 285 TSFLEKKTL 293
                  T+
Sbjct: 295 DWVYATYTI 303


>gi|294814595|ref|ZP_06773238.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
 gi|294327194|gb|EFG08837.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
          Length = 434

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 102/273 (37%), Gaps = 22/273 (8%)

Query: 32  GKILFLSIIMISMASELHAKPK----YSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTL 86
           G  L ++   +S+ +     PK     S +V D    ++        R  PAS  KM+  
Sbjct: 78  GARLGVAGTQVSLGTGAPVLPKDLTARSWVVADAESGEVLAAHNPHWRLAPASTLKMLFA 137

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
             +   L     H   ++   + A    N S + ++E   ++     L +  RS ND   
Sbjct: 138 DTLLPKLPKATTH---KVSADELADVGLNSSVVGVEEDMTYSIHDLWLGVFLRSGNDAVH 194

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI--LLRK 203
                ++G   K    M   A+++   +T   +  G     Q+++A D  ++    L +K
Sbjct: 195 VL-SALNGGIDKTVQDMQAHAEELQALDTQVVSPDGYDAAGQVSSAYDLTLIARSGLQKK 253

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKL------LNKMHNIDGIKTGYTRNSGFNIVTSLR 257
           +F +Y        F  + +I+T  N+L      L+    + G+K G T ++G        
Sbjct: 254 DFREYSATM-TADFPGKGQIVT-TNRLLTGDFGLDPYKGLAGVKNGSTTHAGATFTGVAE 311

Query: 258 YKDDPIVAVVMGMPTSQERD--QKALELITSFL 288
                ++  VM   + +     ++   L+    
Sbjct: 312 RGGRVLLVTVMNPESEENNAVYKETERLLDWGF 344


>gi|257065656|ref|YP_003151912.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Anaerococcus
           prevotii DSM 20548]
 gi|256797536|gb|ACV28191.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Anaerococcus
           prevotii DSM 20548]
          Length = 288

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 94/232 (40%), Gaps = 27/232 (11%)

Query: 65  QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYL 120
           ++ G  +++P   ASLTK+MTL +  +++ +    L    P+       A ++N S    
Sbjct: 49  KVYGKNENKPLPMASLTKIMTLLVSLDHVSN----LGELAPIDYDSYMRAVSENASMAGF 104

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
                 T    +   I  S  + + +    ++GS   F  LM+ K  ++ ++NT Y NA 
Sbjct: 105 LANETTTYRDLMYGTILASGAEAADSLAINVAGSIDSFVDLMNEKVGELNLENTSYANAD 164

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-----------RYRNRIITNHNK 229
           G+ D+    +A+D A+L     ++   +   F+ R +            Y    I +H  
Sbjct: 165 GMDDRRNFQSAKDCAMLIKYGLED-GNFRAIFTKRDYLSQATNEHPDGVYIESTIFSH-- 221

Query: 230 LLNKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
            L         I G K+G T  +G    T         + VVMG+  S   D
Sbjct: 222 -LKDYEENGFEIIGGKSGTTDEAGLCWATLAEKDGKEYIIVVMGVSFSDIDD 272


>gi|328480234|gb|EGF49154.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus MTCC
           5462]
          Length = 250

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 89/205 (43%), Gaps = 24/205 (11%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             +++ I+    ++   K      P AS+TKM+++ ++ + ++S K+  + ++ + ++  
Sbjct: 40  AKAAVAIEPTTGKVLYAKNASTVLPIASMTKMISIELVLDAIKSGKIKWDDKVTLDQSIW 99

Query: 112 T----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
           T    ++ S + L+    ++  +   A +  SAN       + ++GS++KF   M  K K
Sbjct: 100 TISQDRDLSNVPLRRDGSYSVRELYDASLIYSANAAMMLLAKAVAGSQEKFVNQMDAKLK 159

Query: 168 KIGMQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFS 213
             G+ +    N +GL               +     +A+D A +   L K+ P+  K  S
Sbjct: 160 SWGITDAKIVNVTGLNNSQLKDAKVPGTGDNAENEMSAKDMAQVAQHLIKDHPEVLKTTS 219

Query: 214 IRKFRYRNRI-----ITNHNKLLNK 233
           I K  +R        + N + +L  
Sbjct: 220 IAKQTFRKGTDDAINMENWDWMLKG 244


>gi|291544768|emb|CBL17877.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. 18P13]
          Length = 470

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 141/363 (38%), Gaps = 54/363 (14%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKPKY-----SSIVIDVNKNQMTGFKQ-DEPRYPA 78
           +  I L+  +  L I +  + +     P +     ++I+   +  ++   K  DE   P 
Sbjct: 9   KTAILLICCVTALHICLPGLRASAMFTPTFDLQSKAAILYSTDTREVLYAKNQDEKMMPG 68

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPV--SKTAATQN---PSKLYLKE---KTYFTTEQ 130
           +L  +MT  I  E  Q       TQ+ V  S   A  +   PS L   E      FT E+
Sbjct: 69  ALVNLMTALICVENNQDLA---GTQVTVKGSLFDAFVDYSYPSDLRYGEIYRGDVFTLEE 125

Query: 131 GILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
            + A++  S+ + S    + I  GS   F  +M+ KA++IGM+NT + N  G +++ Q+T
Sbjct: 126 LLYAMLLTSSCEASVVIADEIGHGSVPGFVAMMNLKAEEIGMKNTHFTNPDGRYNEYQVT 185

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH----------NKLLNK-----M 234
           TA D  ++   ++++  +  +      +  + R   NH          N ++++      
Sbjct: 186 TAGDMLLMMQYIQEHASKVLEIARTASYSPQIRTQENHQNGTLTWSHANIMMDEESRFYY 245

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP-------TSQERDQKALELITSF 287
               G+KT   +  G NI+          + ++M  P        +    Q A  ++   
Sbjct: 246 KGAAGLKTATLQEYGRNIMVDAARDGHHYLVILMQSPIYNENKENTYYHLQDAAAVLDWA 305

Query: 288 LE----KKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTY----------SQFKKIDAKAH 333
                 ++ L   +   +  + +   + + +I K +             S  ++I  K  
Sbjct: 306 FGHFNYEEILSLNEEIAEIPVENAKNENNYVILKPREELVMLWPDTVDRSVVQRIVVKED 365

Query: 334 STQ 336
           S +
Sbjct: 366 SVK 368


>gi|170016615|ref|YP_001727534.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc citreum KM20]
 gi|169803472|gb|ACA82090.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc citreum KM20]
          Length = 425

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 127/320 (39%), Gaps = 60/320 (18%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPK----------YSSIVIDVNKNQMTGFKQDEPR-Y 76
           ++ +  ++F S+ +IS    + A P            S++V+D    Q+   +       
Sbjct: 1   MKWIKFVVFFSVGLISFVRIVSAAPSAKPIDLKESLTSAVVVDARTGQVLATRNATKLGM 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAATQNP----SKLYLKEKTYFTTEQG 131
            AS +KM+T Y     +   KL  +T IP+ SK   +  P    S L +K   + T  + 
Sbjct: 61  IASQSKMLTAYAALRAIHDGKLTWDTPIPITSKADLSHQPKYVYSHLDIKAGDHLTVREL 120

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN----- 186
             A++T SAND S A  E+++         + + A ++ + ++ + NA+G  + N     
Sbjct: 121 YNAMLTISANDASFALSEYLTPKGMTTQAALQSWANELKLDHSKWYNAAGQVNGNAFENK 180

Query: 187 ---------QITTARDQAILGILLRKNFPQYYKY------------------FSIRKFRY 219
                     + +A   A+L   + K  P                        +  +F +
Sbjct: 181 IAHEPGEAANLASAEHLAMLAREIIKLDPNIRTLGESDFISYKSASANRTVKLTTDQFLF 240

Query: 220 RN---RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVMGM---PT 272
           R+   + ++N N L+     I+G+KTG T  SG      ++       + VV G      
Sbjct: 241 RHQHSKKVSNPNHLI-----IEGLKTGSTPESGAAFTGIVKDQAGHEFITVVNGAGYYTD 295

Query: 273 SQERDQKALELITSFLEKKT 292
           +  R Q+ + ++   L+ + 
Sbjct: 296 TVTRYQETINIVNDVLKSQV 315


>gi|269128396|ref|YP_003301766.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermomonospora curvata
           DSM 43183]
 gi|268313354|gb|ACY99728.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermomonospora curvata
           DSM 43183]
          Length = 447

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 99/278 (35%), Gaps = 39/278 (14%)

Query: 40  IMISMASELHAKPKYSS---IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQS 95
           I++ +     A PK ++   IV D    Q+   K    R+ PAS  KM+T  +    +  
Sbjct: 64  IVVDVGPGAKAPPKIAAGAYIVADAGTGQVLAAKNPHGRFLPASALKMLTA-VAL--IP- 119

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
            KL  N  +  ++       SK+ +  K  +       AL+  S ND + A  +   G  
Sbjct: 120 -KLDPNATVRPTRETCEVEGSKVGMTPKLTYKVSDLFHALLMVSGNDAALALAQAAGGVR 178

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHD------KNQITTARDQAILGILLRKNFPQYY 209
                 M+ +A+++   +T+  + +GL        K Q T+  D A++     K  PQ  
Sbjct: 179 AA-LDSMNAEARRLQANDTLAGSTNGLDVDLGLTVKTQHTSVYDLALIMRQGLKM-PQLR 236

Query: 210 KYFSI---------------RKFRYRNRIITNHNKLL----NKMHNIDGIKTGYTRNSGF 250
            Y                  +  +     I +H +LL     +     G K G+T  +G 
Sbjct: 237 AYIGKNHHYWPAPPTKEQRKKGKKIGGYPIYSHIRLLPGQRYEYPGAIGGKNGFTMAAGQ 296

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
             V +       ++  ++             +L+    
Sbjct: 297 TFVGAAERNGRTLIVALLRGENL---WPDVTKLLDWGF 331


>gi|324999565|ref|ZP_08120677.1| putative penicillin-binding protein [Pseudonocardia sp. P1]
          Length = 310

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 81/219 (36%), Gaps = 15/219 (6%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PAS  K++   +  E L  +++ + T        A  + S+  +     +T +Q +  L+
Sbjct: 9   PASTIKLLLALVADEVLPPERVVVGTV-----EDANIDGSRAGVGPGGRYTVDQLLHGLL 63

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S ND + A    + G +   A +    A  +G ++T     SGL      ++A D A+
Sbjct: 64  LASGNDAAHALSRELGGDQATLAAMQDA-AAHLGARDTRPATPSGLDGPGMSSSAYDLAL 122

Query: 197 LGILLRKNFPQYYKYFSIRKFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           +      + P+           +          + N +++L       G K G+T  +  
Sbjct: 123 ILRAAL-DRPRIAAALRTPSIPFPGFADRPGFELGNDDRMLGT-PGFLGGKNGFTDAARH 180

Query: 251 NIVTSLRYKDDPIVAVVMGMPTSQER-DQKALELITSFL 288
             V ++      +V  ++   +   R   +A  L+    
Sbjct: 181 TFVGAVERDGRRLVVALVRGESQPVRMVDQARSLLDWGF 219


>gi|269102713|ref|ZP_06155410.1| murein-DD-endopeptidase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268162611|gb|EEZ41107.1| murein-DD-endopeptidase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 242

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 98/245 (40%), Gaps = 20/245 (8%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-LYLKEKTYFTTEQGIL 133
              AS+TK+MT  +  +     KL LN +I  +K    +  +    ++  +  +  + I 
Sbjct: 1   MPIASITKLMTAMVTLDA----KLPLNEKITFNKADKERMYNNYTRVRLGSTLSRGETIH 56

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
             +  S N  + A      G  K F   M+ KAK +GM +T + ++SGL D   ++TA D
Sbjct: 57  IALMSSENLAAAALAGHYPGGSKAFVKAMNAKAKALGMTHTRFVDSSGL-DPRNVSTASD 115

Query: 194 QAILGILLRKNFPQYYKYFSIRKFR------YRNRIITNHNKL-LNKMHNIDGIKTGYTR 246
            + L     K +PQ  KY +                 TN N L   K   ++  KTG+ +
Sbjct: 116 VSKLVRAAYK-YPQIRKYSTTPVHTAYFGKPNYKLGYTNTNALARGKKWTVNLTKTGHLK 174

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMP------TSQERDQKALELITSFLEKKTLKHQQTHR 300
            +G  +      +    + V++             R +K LE   S     + K  QT +
Sbjct: 175 VAGHCLAMVTTIQGRKYLMVMLDTQGKLTPVGDAGRIKKWLETGHSGDISASAKAYQTQK 234

Query: 301 KDNLS 305
              L+
Sbjct: 235 YKQLT 239


>gi|145496166|ref|XP_001434074.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124401197|emb|CAK66677.1| unnamed protein product [Paramecium tetraurelia]
          Length = 496

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 96/256 (37%), Gaps = 46/256 (17%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNT-QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           AS+TK+MT Y    YL+   +     +I +   A   + +  +L      T +Q + AL+
Sbjct: 243 ASITKIMTCYTTLTYLKECNIEPEQIKIKIPGHAECIDGTSAFLNAGGILTIKQLLFALM 302

Query: 137 TRSANDVSTAFGEFIS---------------------------------GSEKKFAILMS 163
             S ND +   G  I+                                   +  F   M+
Sbjct: 303 LPSGNDAALVLGFTIAYLMILQKTEIYQYNRYLKGAIIDIEPQIERNKKLLKHTFLDQMN 362

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI 223
             A  I M+NT Y +  GL+D+  ++   D + L     +    + +  + + F+     
Sbjct: 363 KHANSIKMENTNYSSVHGLNDEKNVSCPHDISKLIEKCIQ-LEVFLEIITTKIFKTHALT 421

Query: 224 ----------ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                       N NKLL K     G+KTG T N+G       + ++   + VV+   + 
Sbjct: 422 DKGSKSTFYKWKNTNKLLKK-SGWMGVKTGVTPNAGPCFTGYYKNENLEAIIVVLNCSSM 480

Query: 274 QERDQKALELITSFLE 289
            +R + A  L+ S L+
Sbjct: 481 NQRFRDAEVLLVSALK 496


>gi|145483651|ref|XP_001427848.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124394931|emb|CAK60450.1| unnamed protein product [Paramecium tetraurelia]
          Length = 472

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/258 (22%), Positives = 101/258 (39%), Gaps = 47/258 (18%)

Query: 53  KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKL-HLNTQIPVSKTA 110
             S IV D  +N++    K +     ASLTK+MT YI    L+   L   + ++ V+K A
Sbjct: 207 AKSFIVYDCLENRIISQRKCNRRMEIASLTKIMTFYITMVILKQLNLKSQDIKVKVTKKA 266

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS------------------ 152
           +    +   LK     T +  +  L+  S ND +T   + I                   
Sbjct: 267 SETIGTTAELKYNDILTIQDLLYGLMLPSGNDAATLIAQAIGTIILFYEADKRLDSKLID 326

Query: 153 -------------------GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
                                 + F   M++ +  +G QNT +    GL +++  ++  D
Sbjct: 327 IEQMSAEGHYYNVELKSHQCPIEIFISKMNHYSTLMGQQNTQFACVHGLANEDNYSSCHD 386

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
             +L +   K     Y  F    +  ++    N NKLL+K     GIKTG T ++G  + 
Sbjct: 387 IVLLSLECMK-----YDTFQQPLYNQKSYEWKNTNKLLDK--GFFGIKTGVTDSAGPCLA 439

Query: 254 TSLRYKDDP-IVAVVMGM 270
           ++ R  +    + VV+ +
Sbjct: 440 SAYRSNEMEYYIIVVLNL 457


>gi|302543172|ref|ZP_07295514.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302460790|gb|EFL23883.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           himastatinicus ATCC 53653]
          Length = 929

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 64/268 (23%), Positives = 119/268 (44%), Gaps = 18/268 (6%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS----KLYLKEKTYFTT 128
           +    AS+TK+MT Y++ +    K      +I +  TAA ++ S    +  +KE   FT 
Sbjct: 600 KAVPIASVTKVMTAYVVLKDHPLKAGAEGPRIEIDATAAEESGSADESRASVKEGQSFTQ 659

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
            Q +  L+  S+N+++     + +GS   F   M++ AK +GM+NT Y + SGL  +   
Sbjct: 660 HQLLQLLLINSSNNIARLLARWDAGSLDAFTKKMNDAAKSLGMKNTTYTDPSGLK-ETTK 718

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTR 246
           +TA DQ  L     ++   + +  +    +       I N+N LL K   + GIKTG + 
Sbjct: 719 STASDQLKLAKAAMQS-EAFREVVATPNTQIPGLDGKIYNNNNLLVK-PGVIGIKTGSST 776

Query: 247 NSGFNIVTSLRY----KDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKD 302
            +G  ++         K   I+ VV+     ++R    L+      + ++ K     +  
Sbjct: 777 PAGGALMWGAVRTIDGKKQRILGVVL-----EQRAPTTLDASLQLAQTESYKLITAAQDA 831

Query: 303 NLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
             S+T +KK  ++ ++         + A
Sbjct: 832 LTSATVIKKGDVVGQVDDGLGGTTPVVA 859


>gi|313900621|ref|ZP_07834114.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. HGF2]
 gi|312954683|gb|EFR36358.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. HGF2]
          Length = 306

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 19/212 (8%)

Query: 62  NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS--KTAATQNPSKLY 119
           +   M   +++E   PASLTK+MT+Y   +++    L    +IP S       +  S   
Sbjct: 61  DSKVMLKEREEEAIAPASLTKLMTVYTALQHIDD--LQKTVRIPASIFPQLEKEQASMAG 118

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
                  T E  I   +  S  D        + GSE  F   M+ +A+K+ ++ T ++N 
Sbjct: 119 FLPDEEVTYEDLIYGALLPSGADACMTLAISLYGSEDAFVAEMNAQAEKLKLKQTRFQNC 178

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-------RYRNRIITNHNKL-- 230
           +GL +   +++ RD A +     K  P++ + F    +             I +  ++  
Sbjct: 179 TGLDEAGHVSSVRDIAWILDEALK-LPKFAEAFHATNYVMAPSNMHPEGMTIYSTMRMTM 237

Query: 231 ----LNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
               L++  +I G KTGYT+ +G  + T  R 
Sbjct: 238 DQNELSQ-DDILGGKTGYTKKAGLCLATQARI 268


>gi|218670684|ref|ZP_03520355.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli GR56]
          Length = 152

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 94/155 (60%), Gaps = 4/155 (2%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYII 89
           M  +L +++   ++++ L A    +S+++D    ++   +  +   +PASLTKMMTLY+ 
Sbjct: 1   MAAVLTVTL---AVSAPLAALAGNASLILDARTGKILAAENADTLNHPASLTKMMTLYLT 57

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           FE L+  K+  +T I +SK AA + P+KL +K     T  + +  +I +SAND + A  E
Sbjct: 58  FEALKRGKIAWDTPIKMSKYAAARPPTKLGVKAGGTITVREAVYGMIVKSANDAAAAMAE 117

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
            + GSE  FA +M+ KA+++GM  T++ NASGL +
Sbjct: 118 TLGGSESGFARMMTAKARQLGMSRTVFLNASGLPN 152


>gi|260438393|ref|ZP_05792209.1| D-alanyl-D-alanine carboxypeptidase [Butyrivibrio crossotus DSM
           2876]
 gi|292808979|gb|EFF68184.1| D-alanyl-D-alanine carboxypeptidase [Butyrivibrio crossotus DSM
           2876]
          Length = 345

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 105/265 (39%), Gaps = 27/265 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKL-HLNTQIPVSKTAAT 112
           +++++DVN  ++   K    + YPAS TK++T  I  +Y  +  +  +  ++ +++    
Sbjct: 86  AALLVDVNTGEVLFQKNPHKKEYPASTTKILTSLIAIKYGDANSVRKVGDEVIINEN--- 142

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
            N      ++      +  I   + +S ND +     F + +      LM+ +AK +G  
Sbjct: 143 -NVVMCDFRQGDLIPFDIAIHGALMKSGNDAAAVLALFAADNMSDAVALMNKEAKSLGAT 201

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS--------IRKFRYRNRII 224
            + + N  GL++ N  TT  D  ++     K + ++    S         RK  Y +  I
Sbjct: 202 ESNFVNPHGLYNDNHYTTVYDLYLIFNEAIK-YSKFVDTLSCMKYTGSFTRKTAYGDYSI 260

Query: 225 ----TNHNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVMGMPTS 273
               TN N  L   +       + G K GYT  +  + V           + + M   ++
Sbjct: 261 GCSYTNSNGFLTGSYATPDGIKVYGGKAGYTEVARRSYVMLAESNNGHKYIIITMRAESN 320

Query: 274 QERDQKALELITSF-LEKKTLKHQQ 297
               +    L+    +EKK+    +
Sbjct: 321 SLMYKDLSALLNKIPVEKKSYADNE 345


>gi|291519269|emb|CBK74490.1| D-alanyl-D-alanine carboxypeptidase [Butyrivibrio fibrisolvens
           16/4]
          Length = 376

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 94/235 (40%), Gaps = 19/235 (8%)

Query: 57  IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-- 113
           I+I+     +   +   E   PAS+TK++T+     ++ +++  L+ ++ +S  A     
Sbjct: 129 ILINNKTKDIIASRNATERIVPASMTKVLTVLTAANHITAEQ--LDDKVILSHEAVDYSY 186

Query: 114 --NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S     E    T +      I  S  D +     +++G    F  +M+ +AK++G+
Sbjct: 187 AGGGSTSGFVEDEEVTVKDLFYGTILPSGGDAAAQLAIYVAGDIDSFVKMMNEQAKELGI 246

Query: 172 QNT-IYKNASGLHDKNQITTARDQAILGILLRKN--FPQY--YKYFSIRKFRYRNRIITN 226
             T  + N  G H+K   +T  D AI+ +    N    +    K ++          IT 
Sbjct: 247 SETSHFTNPVGFHNKEHYSTPYDIAIIMMAALDNDICKEVISTKVYNSTATNVNPEGITI 306

Query: 227 HNKLLNKMHN------IDGIKTGYTRNSGFNIVTSLRYK-DDPIVAVVMGMPTSQ 274
            N  L ++ +      I+G KTGY   SG   V+++        +       +S 
Sbjct: 307 SNWFLRRIEDKEFGGEIEGAKTGYVDESGSCAVSAMISNSGTEYICCTAKSSSSW 361


>gi|215447173|ref|ZP_03433925.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
           tuberculosis T85]
          Length = 219

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 81/223 (36%), Gaps = 19/223 (8%)

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           M+   +  + L      LN+ +           + + +K    +T  Q +  L+  S ND
Sbjct: 1   MLLALVALDELD-----LNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGLLLVSGND 55

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI--TTARDQAILGIL 200
            +      + G +      M+ KA  +G  +T     SGL        +TA D  ++   
Sbjct: 56  AANTLAHMLGGQDVT-VAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRA 114

Query: 201 LRKNFPQYYKYFSIRKFRY----RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256
              N P + +  +     +      ++I N ++LL +     G KTGYT  +    V + 
Sbjct: 115 AMAN-PVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAA 173

Query: 257 RYKDDPIVAVVM------GMPTSQERDQKALELITSFLEKKTL 293
                 +V  +M      G PT  ++     +   +   + ++
Sbjct: 174 ARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFALNPQASV 216


>gi|297200368|ref|ZP_06917765.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sviceus ATCC
           29083]
 gi|297147640|gb|EDY53521.2| D-alanyl-D-alanine carboxypeptidase [Streptomyces sviceus ATCC
           29083]
          Length = 813

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 70/219 (31%), Positives = 104/219 (47%), Gaps = 14/219 (6%)

Query: 59  IDVNK-NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-- 115
           +DVN    M  F +  P    S+ K MT YI+ +    K      +I V   A  +    
Sbjct: 473 MDVNGIGTMGDFGKQTPVAIGSVAKAMTAYIVLKDHPLKSGEEGAKITVDALAEKEGGYN 532

Query: 116 ----SKLY-LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
               S L  +K     T  Q I A++  SAN+++     + SGSE  F   M++ AK++G
Sbjct: 533 KQGESTLNTVKNGDVLTQRQAIAAIMIPSANNIARLLARWDSGSEAAFIKKMNDTAKELG 592

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSI-RKFRYRNRIITNHNK 229
           M+NT Y +ASGL  ++ ++TA DQ  LG  L K  P   +  S+ +      +   N+N 
Sbjct: 593 MKNTTYTDASGLK-ESTVSTAEDQVKLGNELVK-IPALMEITSMGQWIDPSGQKWYNYNY 650

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYK-DDPIVAVV 267
           L+     I GIKTG T  +G N++ + R K     V VV
Sbjct: 651 LV-PYTGI-GIKTGTTSAAGGNLLFAARKKVGGETVTVV 687


>gi|213023592|ref|ZP_03338039.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 148

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 64/143 (44%), Gaps = 7/143 (4%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPAS 79
            ++I  ++  M     L+   +S A +  A    + +++D    Q+     + + R PAS
Sbjct: 6   RLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +      
Sbjct: 66  LTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSR 125

Query: 134 ALITRSANDVSTAFGEFISGSEK 156
            LI  S ND   A  ++I+G + 
Sbjct: 126 GLIVDSGNDACVALADYIAGGQP 148


>gi|166240883|ref|ZP_02240755.1| D-alanyl-D-alanine carboxypeptidase [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 146

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 1/127 (0%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           +QL G  LF+S    + A+ +      S+I+++ N  Q+      D    PAS++KMMT 
Sbjct: 20  LQLFGMHLFVSSAAAADANAIPDLQAKSAILMEANTGQVLYENNADTLLPPASMSKMMTE 79

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           Y+I E ++  K+    ++PVSK AA+   S   L E    + +    A+   S+ND S A
Sbjct: 80  YLIMEAIKDGKIKWEDKVPVSKQAASAIGSGQLLAEGEQLSVKDMFYAISIYSSNDASVA 139

Query: 147 FGEFISG 153
             E++ G
Sbjct: 140 MAEYLGG 146


>gi|294629898|ref|ZP_06708458.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14]
 gi|292833231|gb|EFF91580.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14]
          Length = 877

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 68/220 (30%), Positives = 100/220 (45%), Gaps = 15/220 (6%)

Query: 59  IDVNK-NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-- 115
           +DVN    M  F + +P    S+ K MT YII      K      +I V  TA  +    
Sbjct: 535 MDVNGVGTMDHFGEQKPAAIGSVAKTMTAYIILRDHPLKPGEEGPKIKVDATAEKEGGYD 594

Query: 116 ----SKLY-LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
               S L  +K   + T +Q + A++  SAN+++     + +GSE  F   M+  AK++G
Sbjct: 595 KGGESTLNTVKAGDFLTEKQALSAVMIPSANNIARLLARWDAGSEAAFVEKMNATAKELG 654

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-NRIITNHNK 229
           M  T Y + SGL  +  ++TA+DQ  LG  + KN P      S   +     R   N+N 
Sbjct: 655 MTRTTYTDPSGLK-ETTVSTAQDQVKLGNAVVKN-PALVAITSAASWTDPSGRNWPNYNS 712

Query: 230 LLNKMH-NIDGIKTGYTRNSGFNIVTSLRYK-DDPIVAVV 267
           L         GIKTG T  +G N++ + R K     V VV
Sbjct: 713 L--PYWIGAIGIKTGTTTAAGGNLLFAARKKVGGQTVTVV 750


>gi|237733921|ref|ZP_04564402.1| serine-type D-Ala-D-Ala carboxypeptidase [Mollicutes bacterium D7]
 gi|229383002|gb|EEO33093.1| serine-type D-Ala-D-Ala carboxypeptidase [Coprobacillus sp. D7]
          Length = 184

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 87/185 (47%), Gaps = 12/185 (6%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKP--KYSSIVIDVNKNQMT--GFKQDEPRYPASLT 81
           + ++ M   L +S++M  + + + A P    S IV++   +Q+   G  QD  +  AS++
Sbjct: 3   KGVKKMKLGLIISLMMTLVNTNVSAVPFQGKSYIVMEA-SHQIVIEGSNQDYIQSVASIS 61

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT  I  E ++     L+T I V  T      S +Y+      +    +  L+ RS N
Sbjct: 62  KIMTCIIAIENME-----LDTIITVDDTINKAWGSGVYIHIGDKISLRDLLYGLMLRSGN 116

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILGI 199
           D +    + +     KF  +M++KAK++ + +T + N +GL   D    +T  D A L  
Sbjct: 117 DAAVMIAKAVGKEIPKFVDMMNDKAKELQLHSTTFSNPTGLDEEDNGNQSTVYDMARLMA 176

Query: 200 LLRKN 204
              +N
Sbjct: 177 YCHQN 181


>gi|239981571|ref|ZP_04704095.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces albus J1074]
 gi|291453424|ref|ZP_06592814.1| predicted protein [Streptomyces albus J1074]
 gi|291356373|gb|EFE83275.1| predicted protein [Streptomyces albus J1074]
          Length = 907

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/269 (23%), Positives = 114/269 (42%), Gaps = 30/269 (11%)

Query: 64  NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-----TQNPSKL 118
             +  + + +P    S+ K+MT Y I      KK     ++ +   A          S +
Sbjct: 570 GSLGSYGEQKPIPIGSVAKVMTAYTILREHPVKKGTEGERLTIDAKAQQDYENAGQESTV 629

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYK 177
            + E    + ++ I A++  SAN+++     + S G E  F   M+  A ++GM+NT Y 
Sbjct: 630 KVTEGQKISVKEAIEAIMLPSANNIARQLARWDSDGDEAAFVEKMNKYAAELGMENTTYT 689

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF--RYRNRIITNHNKLLNKMH 235
           + SGL  +  +++A DQ  LG  + + F  +     +  +      +   N+N L+    
Sbjct: 690 DPSGLK-ETTVSSAEDQVKLGKAVME-FETFSSVVRLPNYESTTSGQREKNYNFLVPMY- 746

Query: 236 NIDGIKTGYTRNSGFNIVTSLRY--KDDP--IVAVVMG------MPTSQERDQK----AL 281
            + GIKTG T  +G N++ +       +   I+  V G      + T+  R +       
Sbjct: 747 GVVGIKTGSTTKAGGNLLFAAEKVVDGEKQLIIGAVFGQHAPPILDTATARSKDLILRTQ 806

Query: 282 ELITSFLEKKTLKHQQT--HRKDNLSSTS 308
           EL+TS   K  ++      H  D L ST+
Sbjct: 807 ELLTS---KPVVRKGDVVGHVDDGLGSTT 832


>gi|258510359|ref|YP_003183793.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257477085|gb|ACV57404.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 402

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 88/213 (41%), Gaps = 15/213 (7%)

Query: 74  PRYPASLTKMMTLYIIFEY--LQSKK------LHLNTQIPVSKTAATQNPSKLYLKEKTY 125
           P   AS+TK+MT Y++ +   LQ  +      +  +  + V +       S + +     
Sbjct: 77  PVPIASVTKVMTAYLVLQKHPLQLGQQGPSITITPDD-VKVYERDKALGQSVVKVAAGEQ 135

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            T  Q +  L+  S N++ T   ++  GS + F   M+  AK++GM  T Y + +G    
Sbjct: 136 ITEYQALEGLLLPSGNNMGTLLAKWCDGSVQAFVQEMNATAKRLGMTETHYADPTGYSPA 195

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
           +Q + A DQ  L  L  +N P + +     +       +  +   +     I G KTG T
Sbjct: 196 SQ-SDAVDQMKLFALAMQN-PVFRQIVGEAQAELPVAGLVYNVDSVVGHGTIIGGKTGST 253

Query: 246 RNSGFNIVTSLRY--KDDP--IVAVVMGMPTSQ 274
             +G   V + R    +    I+  V+G    Q
Sbjct: 254 LEAGGCFVFAARKVIGNREVLIIGAVLGQKGPQ 286


>gi|226323178|ref|ZP_03798696.1| hypothetical protein COPCOM_00950 [Coprococcus comes ATCC 27758]
 gi|225208368|gb|EEG90722.1| hypothetical protein COPCOM_00950 [Coprococcus comes ATCC 27758]
          Length = 288

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 83/194 (42%), Gaps = 18/194 (9%)

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN----QITTA 191
           +  S ND + A  E ++GS  +FA  M+ KA++IG     +   +GL +++       +A
Sbjct: 1   MLESHNDSAVAIAEHLAGSVPQFAGWMNEKAEEIGCTEAHFVTPNGLDEEDVGGVHSISA 60

Query: 192 RDQAILGILLRKNFP---QYYKYFSIRKFRY------RNRIITNHNKLLNKMHNIDGIKT 242
            D A +        P   ++     +  + +       N   +NHN  L  M      KT
Sbjct: 61  ADLAKIMSYCVLRSPKAAEFLAITQMPAYSFSDAEGKGNFSCSNHNAFLQMMDGAISGKT 120

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVM--GMPTSQE-RDQKALELITSFLEKKTLKHQQTH 299
           G+T ++G+  V +L+ +    V  ++  G P ++  +     +L+   +     ++ +  
Sbjct: 121 GFTGDAGYCYVGALQSEGRTFVVALLACGWPNNKNYKWTDTRKLMEYGM--AHYRYAEVW 178

Query: 300 RKDNLSSTSLKKSL 313
           +   LS   ++ S+
Sbjct: 179 KIPELSKIPVENSV 192


>gi|195953485|ref|YP_002121775.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933097|gb|ACG57797.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 407

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 13/224 (5%)

Query: 61  VNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------ 113
           +    +     ++ ++P AS+ K+MT YII +            I V++    +      
Sbjct: 72  LQSG-IISKNPNQGQWPLASVAKIMTAYIILKDHPLPIGQDGPTITVTQKEVNEYEAFKK 130

Query: 114 -NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S + +      T  Q +  L+  SAN+ +     + +GS K F   M+  A+ +G++
Sbjct: 131 DGQSVVKVALGEKLTERQLLEGLMIPSANNFAYILARWDAGSVKAFVDKMNKTAQSLGLK 190

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-NRIITNHNKLL 231
           +T Y++ SG      ++T +DQ  L  L  +  P +    ++ +       I  N N  L
Sbjct: 191 DTRYEDPSG-ASAGTVSTPKDQFKLTQLAMQ-IPTFRHMVAMPQVNLPIAGIQYNVNYDL 248

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
            K  NI G+KTG +  +G N V   +  +  I+ V+ G      
Sbjct: 249 GK-DNIVGVKTGSSLPAGANFVFDSKQGNIDILGVIFGASGKSS 291


>gi|290959626|ref|YP_003490808.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei 87.22]
 gi|260649152|emb|CBG72266.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei
           87.22]
          Length = 1000

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 73/287 (25%), Positives = 118/287 (41%), Gaps = 43/287 (14%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIV------------------------IDV 61
           R +++   +  L +I+ ++A  L   P  +  +                        +DV
Sbjct: 600 RRVKIWTPLAILLVIVFAVAQSLRPLPAPALALTADESYAFKGGKVDLPWPAEGQGWMDV 659

Query: 62  NK-NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP----- 115
           N    M  F + +P    S+ K MT Y+I +    K       I V     T+       
Sbjct: 660 NGIGTMDSFGEQKPVAIGSVAKAMTAYVILKDHPMKPGEKGKTITVDAKGETEGGYDKDG 719

Query: 116 -SKLY-LKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQ 172
            S L  +KE    +    I A++  SAN+++     + S GSEK F   M+  AK +GM+
Sbjct: 720 ESTLNTVKEGDELSQYDAIAAIMIPSANNIARLLARWDSKGSEKAFVKKMNAAAKDLGMK 779

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILL--RKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
           NT Y + SGL  +  ++TA DQ  LG  L   K      K  +        +   N+N+L
Sbjct: 780 NTTYTDPSGLK-ETTVSTAEDQVKLGNALVRMKALTDITKLPT--WVDPSGKKWDNYNRL 836

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRY--KDDPIVAV--VMGMPTS 273
           +   +N  GIKTG T  +G N++ +       +  + V  V+G  T 
Sbjct: 837 V-PYNNAIGIKTGSTTAAGGNLLFAATQEVGGETAIVVGAVLGQHTP 882


>gi|213161813|ref|ZP_03347523.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 146

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 7/141 (4%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPAS 79
            ++I  ++  M     L+   +S A +  A    + +++D    Q+     + + R PAS
Sbjct: 6   RLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +      
Sbjct: 66  LTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSR 125

Query: 134 ALITRSANDVSTAFGEFISGS 154
            LI  S ND   A  ++I+G 
Sbjct: 126 GLIVDSGNDACVALADYIAGG 146


>gi|313885620|ref|ZP_07819370.1| serine-type D-Ala-D-Ala carboxypeptidase [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619350|gb|EFR30789.1| serine-type D-Ala-D-Ala carboxypeptidase [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 449

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 51/309 (16%), Positives = 116/309 (37%), Gaps = 37/309 (11%)

Query: 24  IQRNIQLMGKILFLSIIMISMASEL-----HAKPKYSSIVIDVNKNQMTGFKQ-DEPRYP 77
           I + + L+  I+ + I  ++  ++      +     S++VI+ +  Q+   +  D+    
Sbjct: 4   IYQWLTLVSVIITIFISPLTTFAQARFDNFNVDQDLSAMVIEGHNGQILFEQNTDKLVEV 63

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGIL 133
             L+K++TLY++ + ++   + ++T++P+S  A       + + + L++   +  E  I 
Sbjct: 64  GDLSKLLTLYLVLDAVKQGNISMDTEVPISDQAFYISQNYDINNVPLRQDYPYKVEDLIQ 123

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI-----------GMQNTIYKNASGL 182
           A++ +SAN  + A  + I   E KF  LM  +  +            GM  T   ++   
Sbjct: 124 AVVIQSANGATLALAQLIEPDEGKFVELMRQQLSQWHLNDFEIFNATGMTQTQINDSYAP 183

Query: 183 HDKN-------QITTARDQAILGILLRKNFPQYYKYFSIR-----KFRYRNRIITNHNKL 230
           +  +          +    A +   L   +P    Y         K       + N N L
Sbjct: 184 YTDDREKNKEVNRMSTEVVATIVYHLMDVYPDILNYSQKDVDVFVKDSDDAFDMNNANLL 243

Query: 231 L----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           +          DG+    +  +  +IV +       ++ + +G        Q  ++L   
Sbjct: 244 VSGGEYNYDLADGLMVDDSHEAQASIVATAEKDGLRVIGISLGQEDPVAMYQDMIDLFNQ 303

Query: 287 FLEKKTLKH 295
                 L+ 
Sbjct: 304 SFSAYRLEA 312


>gi|225028474|ref|ZP_03717666.1| hypothetical protein EUBHAL_02751 [Eubacterium hallii DSM 3353]
 gi|224954224|gb|EEG35433.1| hypothetical protein EUBHAL_02751 [Eubacterium hallii DSM 3353]
          Length = 543

 Score =  136 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 97/276 (35%), Gaps = 25/276 (9%)

Query: 54  YSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA- 111
           ++ +V+D    ++   +  ++  YPAS  K+MT  +  E     K ++N+ I        
Sbjct: 33  HAYVVMDAGSGEVLFGQDANKKIYPASTAKLMTAIVCVE-----KGNVNSVIKTKSDVVY 87

Query: 112 --TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
             T     L +     +T +  +   +  SA D + +    + GS+K     M+ K K++
Sbjct: 88  RTTPGTYSLGIGAGVNYTFKDLLHMSLMSSAADATDSLAVGVFGSKKACVEAMNEKCKEL 147

Query: 170 GMQNTIYKNASGLH----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY--RNRI 223
           G++ T + N  G            +A++ A +        P      S   +        
Sbjct: 148 GLKKTHFDNPVGSDIGAGYNETYASAKEMAKICRYAM-AIPLIRSAVSKAHYSTQKGGMY 206

Query: 224 ITNHNKLLNKM-------HNIDGIKTGYTRNSGFNIVTS-LRYKDDPIVAVVMGMPTSQE 275
           +   N  L  M       + I G K+G T  +G   + +   YK   ++    G  + + 
Sbjct: 207 VNTTNWFLKGMAYYDRDTYKIIGSKSGTTNAAGHVFIATAADYKGHELICAYFGNVSKES 266

Query: 276 RDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
                  L          K + T    N    S +K
Sbjct: 267 TFASIRSLFDYAFNNYK-KGKLTLTPSNYDVRSSQK 301


>gi|254388319|ref|ZP_05003554.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
 gi|197702041|gb|EDY47853.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
          Length = 883

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 119/294 (40%), Gaps = 24/294 (8%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEY------LQSKKLHLNTQIPVS 107
             ++ +D     +  +   +PR  AS+TK MT Y+I          Q  ++ ++ +    
Sbjct: 533 QGAVAVD-GVGTVATYGDQKPRPIASVTKAMTAYVILREKPLTGKGQGDRITIDQRTEDE 591

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
             +   + S + +K    +T  Q +  L+  SAN+V+     + +GSE  F   M   A 
Sbjct: 592 YHSGKNSESVVEVKAGQKYTQRQLLELLMIPSANNVARLLARWHAGSEAAFVKKMQAAAD 651

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIIT 225
            +GM++T+Y + SGL     ++T  DQ  L     ++   + +  +  K +     R I 
Sbjct: 652 DLGMKDTVYTDPSGL-RSTTVSTPLDQLKLAEAAMQD-EVFREIVNTTKLKVPGIERTIY 709

Query: 226 NH--NKLLNKMHNIDGIKTGYTRNSGFNIVTS--LRYKD--DPIVAVVMGMPTSQERDQK 279
           N     LL  +  + GIKTG +  +G N++ S           +      +     R  +
Sbjct: 710 NSADKALL--LDGVGGIKTGSSTPAGGNLLWSANAEVDGEIHRVYGATFDV-HDAGRLDE 766

Query: 280 ALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAH 333
            LEL        +++  +  ++   S T +KK  ++ ++         + A   
Sbjct: 767 KLELAVDH----SIRVIEAAQQAVTSDTVIKKGTVVGRVDDGLGGTTPVVATED 816


>gi|294814332|ref|ZP_06772975.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
 gi|294326931|gb|EFG08574.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
          Length = 859

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 119/294 (40%), Gaps = 24/294 (8%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEY------LQSKKLHLNTQIPVS 107
             ++ +D     +  +   +PR  AS+TK MT Y+I          Q  ++ ++ +    
Sbjct: 509 QGAVAVD-GVGTVATYGDQKPRPIASVTKAMTAYVILREKPLTGKGQGDRITIDQRTEDE 567

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
             +   + S + +K    +T  Q +  L+  SAN+V+     + +GSE  F   M   A 
Sbjct: 568 YHSGKNSESVVEVKAGQKYTQRQLLELLMIPSANNVARLLARWHAGSEAAFVKKMQAAAD 627

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIIT 225
            +GM++T+Y + SGL     ++T  DQ  L     ++   + +  +  K +     R I 
Sbjct: 628 DLGMKDTVYTDPSGL-RSTTVSTPLDQLKLAEAAMQD-EVFREIVNTTKLKVPGIERTIY 685

Query: 226 NH--NKLLNKMHNIDGIKTGYTRNSGFNIVTS--LRYKD--DPIVAVVMGMPTSQERDQK 279
           N     LL  +  + GIKTG +  +G N++ S           +      +     R  +
Sbjct: 686 NSADKALL--LDGVGGIKTGSSTPAGGNLLWSANAEVDGEIHRVYGATFDV-HDAGRLDE 742

Query: 280 ALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAH 333
            LEL        +++  +  ++   S T +KK  ++ ++         + A   
Sbjct: 743 KLELAVDH----SIRVIEAAQQAVTSDTVIKKGTVVGRVDDGLGGTTPVVATED 792


>gi|256394922|ref|YP_003116486.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Catenulispora
           acidiphila DSM 44928]
 gi|256361148|gb|ACU74645.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Catenulispora
           acidiphila DSM 44928]
          Length = 311

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 97/229 (42%), Gaps = 19/229 (8%)

Query: 62  NKNQ--MTGFKQDEPRYPASLTKMMTLYIIFEY--LQSKK----LHLNTQIPVSKTAA-- 111
              Q  +           AS+TK+MT Y++     L++ +    L L     V+ TA   
Sbjct: 69  ETGQSRVQAGPNQHAAPIASVTKVMTAYLVLRDHPLRAGQDGPALTLTD-ADVADTAQRR 127

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
           +Q+ S + +    + T  Q + AL+  SAN+++     + +GS  +F   M+  A+ +GM
Sbjct: 128 SQDQSIVPVAAGEHLTERQALQALLLPSANNIAVVLARWDAGSVDQFVARMNATAQSLGM 187

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-NRIITNHNKL 230
           ++T Y + SG  D+  ++TA DQ  +     +  P +    ++          + N + L
Sbjct: 188 RDTRYTDPSGF-DEATVSTAVDQVQIVARAMR-LPVFADIVAMPSAALPVAGTVANTDTL 245

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRY----KDDPIVAVVMGMPTSQE 275
           +       G+KTG    +G             K   I  VV+G P + +
Sbjct: 246 VGH-DGFVGVKTGSDDAAGGCFAFQAVRTIGGKQTTITGVVLGQPGANQ 293


>gi|326442723|ref|ZP_08217457.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 824

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 119/294 (40%), Gaps = 24/294 (8%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEY------LQSKKLHLNTQIPVS 107
             ++ +D     +  +   +PR  AS+TK MT Y+I          Q  ++ ++ +    
Sbjct: 474 QGAVAVD-GVGTVATYGDQKPRPIASVTKAMTAYVILREKPLTGKGQGDRITIDQRTEDE 532

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
             +   + S + +K    +T  Q +  L+  SAN+V+     + +GSE  F   M   A 
Sbjct: 533 YHSGKNSESVVEVKAGQKYTQRQLLELLMIPSANNVARLLARWHAGSEAAFVKKMQAAAD 592

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIIT 225
            +GM++T+Y + SGL     ++T  DQ  L     ++   + +  +  K +     R I 
Sbjct: 593 DLGMKDTVYTDPSGL-RSTTVSTPLDQLKLAEAAMQD-EVFREIVNTTKLKVPGIERTIY 650

Query: 226 NH--NKLLNKMHNIDGIKTGYTRNSGFNIVTS--LRYKD--DPIVAVVMGMPTSQERDQK 279
           N     LL  +  + GIKTG +  +G N++ S           +      +     R  +
Sbjct: 651 NSADKALL--LDGVGGIKTGSSTPAGGNLLWSANAEVDGEIHRVYGATFDV-HDAGRLDE 707

Query: 280 ALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAH 333
            LEL        +++  +  ++   S T +KK  ++ ++         + A   
Sbjct: 708 KLELAVDH----SIRVIEAAQQAVTSDTVIKKGTVVGRVDDGLGGTTPVVATED 757


>gi|254383787|ref|ZP_04999135.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. Mg1]
 gi|194342680|gb|EDX23646.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. Mg1]
          Length = 443

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 16/219 (7%)

Query: 64  NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA------TQNPSK 117
             +  F + +P    S+ K MT Y+I +    KK      I V K A       ++  S 
Sbjct: 106 GTVGSFGEQKPVAIGSVAKAMTAYVILKGHPLKKGEKGAMIDVDKAAVEDGKKESEGEST 165

Query: 118 LY-LKEKTYFTTEQGILALITRSANDVSTAFGEFISG-SEKKFAILMSNKAKKIGMQNTI 175
           +  LKE    +    + A++  SAN+V+     + +G  ++ F   M++ AK++GM NT 
Sbjct: 166 VNTLKEGGQISEYDALAAIMIPSANNVARLLARWDAGGDQEAFVKKMNDAAKELGMTNTT 225

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR-YRNRIITNHNKLLNKM 234
           Y + SGL D   ++TA DQ  LG+ + +  P+      +  +     +   N+N L+   
Sbjct: 226 YTDPSGL-DATTVSTAEDQVKLGLKIVEM-PELIAITRLPNWTDASGKSWRNYNDLI-PF 282

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYK----DDPIVAVVMG 269
           +   GIKTG T  +G N++ +   K    +  +V  V+G
Sbjct: 283 NGSLGIKTGSTTKAGGNLLFAAEKKVGKTNQLVVGAVLG 321


>gi|323341764|ref|ZP_08081997.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein
           [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464189|gb|EFY09382.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein
           [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 434

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 17/230 (7%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA--- 111
            I++D    Q    K  D   +PAS+TK++T+    E L   +  L+T   +        
Sbjct: 40  YILVDPKTGQTLAEKNHDASIHPASITKVLTVITAIEAL--GETSLDTLYTIPPEVFEGL 97

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S    +E    T    +  ++  S  D + A   +++   +K  + M+  A++IGM
Sbjct: 98  DPIASVAGFQEGDQVTLNDLLHGIMLPSGADATRAISSYLTHDPEKLVVKMNRLAQRIGM 157

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-------RYRNRII 224
           +N+ + N SGL D   +TT  D A+L     +N P +   +    +             +
Sbjct: 158 KNSHFVNTSGLDDPKHLTTLDDLALLLRYALEN-PTFESIYKTETYLTSSTPSHPNGIEL 216

Query: 225 TNHNKLL---NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           TN +  +        I G K+G T  +   + +         + +    P
Sbjct: 217 TNESLSVAHQKGYTMIKGAKSGTTDLAERALSSVAEDASQSYIFISTNAP 266


>gi|319653046|ref|ZP_08007150.1| hypothetical protein HMPREF1013_03765 [Bacillus sp. 2_A_57_CT2]
 gi|317395265|gb|EFV75999.1| hypothetical protein HMPREF1013_03765 [Bacillus sp. 2_A_57_CT2]
          Length = 290

 Score =  135 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 88/211 (41%), Gaps = 12/211 (5%)

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK-IGMQNTIYKNASGLHD 184
               + +  ++  S ND + +  E + G+ K F+  +++  ++  G++NT + N  GL D
Sbjct: 1   MPLIKLVQGMLINSGNDAAWSIAEHLDGNMKAFSENLNHYLEESAGLKNTHFVNPHGLFD 60

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNKLLNK---MHNI 237
           +N  TTA D A L     KN   + + +  ++ ++     +  I  H+++L        +
Sbjct: 61  ENHYTTAGDLAKLTNYALKN-ETFREIYGTKEMKWAGKSWDTTIFTHHRMLKGEVPFEGV 119

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF---LEKKTLK 294
            G KTG+   +   + TS       + A+V+     ++       L+       E  TL 
Sbjct: 120 TGGKTGFVDEAKQTLATSAENDSIKLTAIVLKAEFKRDIYNDTKNLLNYGFSNFETSTLS 179

Query: 295 HQQTHRKDNLSSTSLKKSLMIKKLKRTYSQF 325
                  D  + T+  +++ I   K  Y + 
Sbjct: 180 STDVFPSDGKTYTTGGENVAITLPKGIYEED 210


>gi|268610245|ref|ZP_06143972.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus flavefaciens
           FD-1]
          Length = 471

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/279 (21%), Positives = 116/279 (41%), Gaps = 45/279 (16%)

Query: 33  KILFLSIIMISMASELHAKPK--------------YSSIVIDVNKNQMTGFKQ-DEPRYP 77
           K LF +I  + MA    + PK               S+IVI+++ + +   K  D  + P
Sbjct: 2   KKLFAAIASVVMAVPFISAPKAEAISFPLKNQIQSESAIVINMDVDTVIHEKNADTKQMP 61

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPV--------SKTAATQNPSKLYLKEKTYFTTE 129
             L  +M   +  E   +    +N ++ V        ++T    +     + ++   T  
Sbjct: 62  GPLVNIMAAVVCLENCPN----INAEVTVHSSVYEYLNETEYKDDLRWADIYDEDVLTVT 117

Query: 130 QGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
             + A++  S+ + S     ++  G+   F  +M++KA++IG++NT + NA+G++D  Q 
Sbjct: 118 DLLYAMMLTSSMEASETLAYYVGDGNTDNFIKMMNDKAEEIGLENTHFTNATGMYDTAQY 177

Query: 189 TTARDQAILGILLRKNFPQYYKYFSI-----------RKFRYRNRIITNHNKLLNK---- 233
           TTARD A L        P +    +            R   +   I T+ N +++     
Sbjct: 178 TTARDMAKLTQYAL-TVPLFETIATTFQYNPSIPNPDRHKSHEEWIWTHSNGMMDPSSGD 236

Query: 234 -MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
               + GIKT     +G NI+       +  +AV++  P
Sbjct: 237 YYSGMKGIKTANLEMAGRNIIAMASRDGNKYLAVLLKAP 275


>gi|118587105|ref|ZP_01544535.1| serine-type D-Ala-D-Ala carboxypeptidase [Oenococcus oeni ATCC
           BAA-1163]
 gi|118432515|gb|EAV39251.1| serine-type D-Ala-D-Ala carboxypeptidase [Oenococcus oeni ATCC
           BAA-1163]
          Length = 423

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/300 (20%), Positives = 122/300 (40%), Gaps = 32/300 (10%)

Query: 28  IQLMGKILFLSIIMISMASELHAKP--KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMM 84
           + L       SI ++ + +E+         +IVID    Q+   K  + RYP AS++K++
Sbjct: 11  LSLFAFFTVFSINVLKVKAEIITPSIKAKGAIVIDEKTGQILASKNADKRYPIASISKLL 70

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSK--TAATQN--PSKLYLKEKTYFTTEQGILALITRSA 140
             Y++ + ++  K+ LNT++ +     A +Q    + + L     +T ++ +   +  S 
Sbjct: 71  IAYLVEKRIKENKISLNTKVKIPSGIVAISQETTITNVPLSATRSYTIKELLEDALLPSG 130

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HDKN 186
           N  + A G  I+GS  K    M        ++     + +GL               D  
Sbjct: 131 NGAAIALGAAITGSVSKTETAMEKLLSSWNIKGVKIYSPAGLTNGEMGAYKDKSASDDAE 190

Query: 187 QITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKM---HNID 238
              +A++ A +   L  +FP   K        +      +  I N N+LL  +   +   
Sbjct: 191 NKLSAKELAEVSRHLMLDFPSIRKITDKSSAVVSSTSGSSYTIENTNQLLKNIKSPYKFT 250

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT---SQERDQKALELITSFLEKKTLKH 295
           GIKTG   + G N +   R K   ++ VV+G  +      R  + + +++   +  ++K 
Sbjct: 251 GIKTGSAESIGGNFIGETRIKGQKVITVVLGSGSMTDESTRFVQTVSMLSQLNKASSIKK 310


>gi|333009574|gb|EGK29026.1| D-alanyl-D-alanine carboxypeptidase dacC domain protein [Shigella
           flexneri K-272]
 gi|333020501|gb|EGK39764.1| D-alanyl-D-alanine carboxypeptidase dacC domain protein [Shigella
           flexneri K-227]
          Length = 147

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 10/141 (7%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGF-KQDEPRYPAS 79
           + R +      LFL       A +    P     + I++D    ++      DE   PAS
Sbjct: 7   LLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDTRAWILMDYASGKVLAEGNADEKLDPAS 66

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++ + L++ K+ L   + V K A        +  S ++LK     +      
Sbjct: 67  LTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNK 126

Query: 134 ALITRSANDVSTAFGEFISGS 154
            +I +S ND   A  ++++GS
Sbjct: 127 GVIIQSGNDACIAPADYVAGS 147


>gi|218288202|ref|ZP_03492501.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218241561|gb|EED08734.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 402

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 15/212 (7%)

Query: 75  RYPASLTKMMTLYIIFEY--LQSKK------LHLNTQIPVSKTAATQNPSKLYLKEKTYF 126
              AS+TK+MT Y++ +   LQ  +      +  +  + V +       S + +      
Sbjct: 78  VPIASVTKVMTAYLVLQKHPLQLGQQGPSITITPDD-VKVYERDKALGQSVVKVAAGEKI 136

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           T  Q +  L+  S N++ T   ++  GS + F   M+  AK++GM  T Y + +G    +
Sbjct: 137 TEYQALQGLLLPSGNNMGTLLAKWCDGSVQAFVQEMNATAKRLGMTETHYADPTGYSPAS 196

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
           Q + A DQ  L  L  +N P + +     +       +  +   +     I G KTG T 
Sbjct: 197 Q-SDAVDQMKLFALAMEN-PVFRQIVGEAQAELPVAGLVYNVDSVVGHGTIIGGKTGSTL 254

Query: 247 NSGFNIVTSLRY--KDDP--IVAVVMGMPTSQ 274
            +G   V + R         I+  V+G    Q
Sbjct: 255 EAGGCFVFAARKVIGSREVLIIGAVLGQKGPQ 286


>gi|467182|gb|AAA17340.1| L308_F1_36 [Mycobacterium leprae]
          Length = 228

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 9/163 (5%)

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            +S ND + +    + G ++     ++  A K+G Q+T     SGL      T+A D  +
Sbjct: 1   MQSGNDAAHSLAMQLGGMQQA-LQKINVLAAKLGGQDTRVATPSGLDGPGMSTSAYDIGL 59

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRN------RIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
                 +N P +    + R F +          + N N+LL +     G KTGYT ++G 
Sbjct: 60  FYRYAWQN-PSFSNIVATRTFNFPGPGDHPGYQLENDNQLLYQYPGALGGKTGYTDDAGQ 118

Query: 251 NIVTSLRYKDDPIVAVVM-GMPTSQERDQKALELITSFLEKKT 292
             V +       ++AV++ G        ++A  L+        
Sbjct: 119 TFVGAANRNGRRLMAVLLHGTRQPIAPWEQAAHLLDYGFSTAV 161


>gi|322806098|emb|CBZ03665.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum H04402
           065]
          Length = 167

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 1/109 (0%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+++I+    ++   K   E   PAS+TK+MT+ +  E + S K+ L  ++ +S+ A 
Sbjct: 56  AKSALLIEPTTGKVIYEKNPHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAK 115

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
               S + L      T E  +  +   S ND + A GE+++GSE+ F  
Sbjct: 116 KMGGSTMLLDVGEERTVEDLLKGIAIASGNDAAVAMGEYLAGSEEAFVK 164


>gi|284992776|ref|YP_003411330.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Geodermatophilus obscurus DSM 43160]
 gi|284066021|gb|ADB76959.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
           [Geodermatophilus obscurus DSM 43160]
          Length = 439

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 86/269 (31%), Gaps = 31/269 (11%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSK 96
           +++    A           +V D     +   +    RY PAS             L++ 
Sbjct: 73  TVVADGTAPLPDEVVAPGWLVADAGSGAVLAARDPHGRYYPAS------------TLKTL 120

Query: 97  K-------LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
                   L     +  +        S++ +     +       AL+ +S ND + A   
Sbjct: 121 TLLTLLPVLDPAEVVEGTVEDEAVEGSRVGMVAGGRYPVPLLYQALVMQSGNDAANALAR 180

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
              G++      M+  A  IG  +T+    SGL    Q ++  D A++   L ++ P   
Sbjct: 181 AAGGTDVT-VRAMNEVAGSIGAFDTVAGTPSGLDVAGQSSSPYDLALVFRRLVED-PDTV 238

Query: 210 KYFSIR-------KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
                R       + R+      N N L        G KTG+T  +    VT+       
Sbjct: 239 ALLQTRLAEMPAVEGRHPGFQFHNQNPL-AGTPGNLGGKTGFTDAARHTFVTAAERDGRR 297

Query: 263 IVAVVMGMPTSQERDQK-ALELITSFLEK 290
           +V  VMG  +   R    A  L+      
Sbjct: 298 LVVSVMGTESVPLRAADQAASLLDWGFAT 326


>gi|300313783|ref|YP_003777875.1| D-alanyl-D-alanine carboxypeptidase [Herbaspirillum seropedicae
           SmR1]
 gi|300076568|gb|ADJ65967.1| D-alanyl-D-alanine carboxypeptidase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 385

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 95/228 (41%), Gaps = 19/228 (8%)

Query: 58  VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-NP 115
           V+D         +  +   P AS+TK+MT  +   +L  K+L +  ++ V++        
Sbjct: 148 VLDEQTGTPLFERNADTVAPIASVTKLMTAIV---WLDQKQLAMGNRLEVTEDDLDTLKF 204

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           +   L      +    +   +  S N  + A      G    F   M+ +A+ +GM +T 
Sbjct: 205 THSRLGVGASLSRADMLHIALMSSENRAAAALSRDYPGGRPAFIAAMNARAQALGMSHTH 264

Query: 176 YKNASGLHDKNQITTARDQAIL------GILLRKNFPQYYKYFSIRKFRYRNRIIT-NHN 228
           ++NA+GL     ++T R+ A L        L+R +     K  +I     R ++   N N
Sbjct: 265 FENATGLS-PENVSTPRELAALVQAANRYQLIRNDSLDKQKMINI----GRGQLQYINSN 319

Query: 229 KLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDP-IVAVVMGMPTSQ 274
           +L+     N    KTG+   SG N+V  +   D   ++  ++G  ++ 
Sbjct: 320 RLIRYGQVNASVQKTGFINESGHNMVLRMLVHDRRPVIVTMLGSGSAD 367


>gi|290890204|ref|ZP_06553285.1| hypothetical protein AWRIB429_0675 [Oenococcus oeni AWRIB429]
 gi|290480150|gb|EFD88793.1| hypothetical protein AWRIB429_0675 [Oenococcus oeni AWRIB429]
          Length = 423

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 59/292 (20%), Positives = 120/292 (41%), Gaps = 30/292 (10%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEY 92
           +  ++++ +  A    +     +IVID    Q+   K  + RYP AS++K++  Y++ + 
Sbjct: 19  VFSINVLKVKAAIITPSIKAKGAIVIDEKTGQILASKNADKRYPIASISKLLIAYLVEKR 78

Query: 93  LQSKKLHLNTQIPVSK--TAATQN--PSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           ++  K+ LNT++ +     A +Q    + + L     +T ++ +   +  S N  + A G
Sbjct: 79  IKENKISLNTKVKIPSGIVAISQETTITNVPLSATRSYTIKELLEDALLPSGNGAAIALG 138

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HDKNQITTARDQ 194
             I+GS  K    M        ++     + +GL               D     +A++ 
Sbjct: 139 AAITGSVSKTETAMEKLLSSWNIKGVKIYSPAGLTNGEMGAYKDKLASDDAENKLSAKEL 198

Query: 195 AILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKM---HNIDGIKTGYTR 246
           A +   L  +FP   K        +      +  I N N+LL  +   +   GIKTG   
Sbjct: 199 AEVSRHLMLDFPSIRKITDKSSAVVSSTSGSSYTIENTNQLLKNIKSPYKFTGIKTGSAE 258

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPT---SQERDQKALELITSFLEKKTLKH 295
           + G N +   R K   ++ VV+G  +      R  + + +++   +  ++K 
Sbjct: 259 SIGGNFIGETRIKGQKVITVVLGSGSMTDESTRFVQTVSMLSQLNKASSIKK 310


>gi|329934220|ref|ZP_08284299.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           griseoaurantiacus M045]
 gi|329305816|gb|EGG49671.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           griseoaurantiacus M045]
          Length = 341

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 111/272 (40%), Gaps = 42/272 (15%)

Query: 33  KILFLSIIMISMASELHA------KPKYSSIVIDVNKNQMTGFKQD-------EPRYPAS 79
            +L ++++    +    A          +S+V++       G   D        P   AS
Sbjct: 52  AVLAVAVLTSGNSPGAGAGSLPWPPEGQTSVVVEG-----LGAHGDLGTRGERTPVPIAS 106

Query: 80  LTKMMTLYIIFE-----YLQSKKLHLNTQIPVSKTAATQN----PSKLYLKEKTYFTTEQ 130
           +TK+MT ++I         +   L     + V +TAA ++     S + ++E T  +  +
Sbjct: 107 VTKVMTAWVILRDRPLRAGEDGPL-----VTVDRTAANESFSGVESSVPVREGTRLSERR 161

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  L+  S N+++     + +GS++ F + M+  A+ +GM++T Y  ASG+      T+
Sbjct: 162 LLELLLIPSGNNIARLLARWNAGSQEAFVMKMNRAARDLGMRHTTYTGASGIEPTTTSTS 221

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIITNHNKLLNKMHNIDGIKTGYTRNS 248
           A DQ  L   +  +   +    ++           I N N LL     + G+KTG +  +
Sbjct: 222 A-DQLRLARRVMHD-EVFRTVVAMPGTTVPGVPGTIRNTNTLLGTA-GVIGLKTGSSTPA 278

Query: 249 GFNI--VTSLRYKDDP---IVAVVMGMPTSQE 275
           G  +    +          I+ VV+   +  +
Sbjct: 279 GGALMWAATASDNGGRDRLILGVVLHQRSGTD 310


>gi|116490774|ref|YP_810318.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni PSU-1]
 gi|116091499|gb|ABJ56653.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni PSU-1]
          Length = 423

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 59/292 (20%), Positives = 120/292 (41%), Gaps = 30/292 (10%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEY 92
           +  ++++ +  A    +     +IVID    Q+   K  + RYP AS++K++  Y++ + 
Sbjct: 19  VFSINVLKVKAAIITPSIKAKGAIVIDEKTGQILASKNADKRYPIASISKLLIAYLVEKR 78

Query: 93  LQSKKLHLNTQIPVSK--TAATQN--PSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           ++  K+ LNT++ +     A +Q    + + L     +T ++ +   +  S N  + A G
Sbjct: 79  IKENKISLNTKVKIPSGIVAISQETTITNVPLSATRSYTIKELLEDALLPSGNGAAIALG 138

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------------HDKNQITTARDQ 194
             I+GS  K    M        ++     + +GL               D     +A++ 
Sbjct: 139 AAITGSVSKTETAMEKLLSSWNIKGVKIYSPAGLTNGEMGAYKDKSASDDAENKLSAKEL 198

Query: 195 AILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKM---HNIDGIKTGYTR 246
           A +   L  +FP   K        +      +  I N N+LL  +   +   GIKTG   
Sbjct: 199 AEVSRHLMLDFPSIRKITDKSSAVVSSTSGSSYTIENTNQLLKNIKSPYKFTGIKTGSAE 258

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPT---SQERDQKALELITSFLEKKTLKH 295
           + G N +   R K   ++ VV+G  +      R  + + +++   +  ++K 
Sbjct: 259 SIGGNFIGETRIKGQKVITVVLGSGSMTDESTRFVQTVSMLSQLNKASSIKK 310


>gi|213417971|ref|ZP_03351051.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 113

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 7/113 (6%)

Query: 59  IDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----- 112
           +D    ++      DE   PASLTK+MT Y++ + L++ K+ L   + V K A       
Sbjct: 1   MDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPA 60

Query: 113 -QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
            +  S ++LK     +       +I +S ND   A  ++++GS++ F  LM+ 
Sbjct: 61  LRGSSVMFLKPGDQVSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNA 113


>gi|229824756|ref|ZP_04450825.1| hypothetical protein GCWU000182_00104 [Abiotrophia defectiva ATCC
           49176]
 gi|229791085|gb|EEP27199.1| hypothetical protein GCWU000182_00104 [Abiotrophia defectiva ATCC
           49176]
          Length = 329

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 109/227 (48%), Gaps = 25/227 (11%)

Query: 67  TGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS---KLYLKE 122
              K   +  YPASLTKMMT Y++F    +K+ +L+  + +   +   +     K+ L +
Sbjct: 88  IYSKNCFKKMYPASLTKMMTAYVVF----AKEKNLDRTVKIDGESIKISEPLAKKIRLMD 143

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
               T  Q + A +  SAND + A    ++GSE+KFA LM+ +AKKIG  ++ + N++GL
Sbjct: 144 GDEVTIRQLLNAALVTSANDAAKALAVAVAGSEEKFAALMNEEAKKIGATHSRFVNSTGL 203

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN---------RIITNHNKLLNK 233
           HD    +T  D  ++   L KN  ++ K  +   +  ++         + +++ N+ L  
Sbjct: 204 HDTAHYSTLYDLYLIFNELLKNS-EFVKIVNQGSYTMKHKNSAGVEVVKTMSSTNQYLAG 262

Query: 234 ------MHNIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVMGMPTS 273
                  + + G KTG T  +G  I+ S +   D   +  V+    +
Sbjct: 263 VMKVPDGYTVIGGKTGTTDEAGSCILMSFKSSSDKKYIVGVLKASDA 309


>gi|227432674|ref|ZP_03914647.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227351556|gb|EEJ41809.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 444

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 60/324 (18%), Positives = 132/324 (40%), Gaps = 54/324 (16%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTA 110
             S++V+D+   Q+ G K   +    AS +KM+T Y + + ++S K+  +T +P+ SK+ 
Sbjct: 57  ATSALVVDLTTGQILGQKNSSKQVAIASQSKMLTAYGVLKSIKSGKIKWSTMVPITSKSD 116

Query: 111 ATQNPSKLY----LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
            ++  S ++    +K     +  +    +   SAND + A GEF++   +     + + A
Sbjct: 117 LSKEDSHMFSHIAIKAGDKVSVRELYDVMFANSANDAAFALGEFVTPKGETTQQTLESWA 176

Query: 167 KKIGMQNTIYKNASGLHDKNQI----TTARD----------QAILGILLRKNFPQYYK-- 210
           K++ +  + + N++G  ++N      ++A             A++   + +  P   +  
Sbjct: 177 KELHLSGSQWYNSAGQVNENTFENEISSAPKTASNKASNQQLAMIARAILELDPSLRQLS 236

Query: 211 ------YFSIRKFRYRNRI------------ITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
                 Y     F   ++             ++N N+L      I+G+KTG +  SG   
Sbjct: 237 KKLTISYHMTPNFVVTDKTDYWQLMTETMPNLSNPNQL-----TIEGLKTGSSPESGAGF 291

Query: 253 VTSLR-YKDDPIVAVVMGMPT---SQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
              ++       + VV G+       +R Q++L ++      + L  +Q +      +  
Sbjct: 292 TGLIKDKNGHEFITVVNGIANYMDETKRYQESLRIVD-----QVLAQKQPNYIKENQTVG 346

Query: 309 LKKSLMIKKLKRTYSQFKKIDAKA 332
             K+L     K+ +   K    + 
Sbjct: 347 HLKTLTFPNTKQEHIIVKAAQTRH 370


>gi|218458342|ref|ZP_03498433.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli Kim 5]
          Length = 219

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 5/153 (3%)

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN 236
            N +GL  K Q TTARD A+L + LR++FPQY  YFS+  F    + + N N L+ +   
Sbjct: 1   VNPNGLPGKGQYTTARDLAVLTVALRRDFPQYASYFSLEGFTTGQQNVPNLNMLIGRFAG 60

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK----- 291
            DG+KTG+   SGFN + S       +V+VV+G  +   R      L+      +     
Sbjct: 61  ADGMKTGFICASGFNQIGSATRNGRTLVSVVLGTDSLAARADATANLLQKGFTTQFPGND 120

Query: 292 TLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQ 324
           TL   + + +     T +   +   K  +  S+
Sbjct: 121 TLGSLKPYGQGQDQVTDITADICSAKGAKIRSE 153


>gi|116619089|ref|YP_819460.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|116097936|gb|ABJ63087.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 299

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 105/242 (43%), Gaps = 28/242 (11%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             +++V++ + +++   K        AS++K+MT Y++      KKL L TQ+  S    
Sbjct: 43  AKAAVVMNADTDKILSEKNAHKSLAIASISKLMTGYLVL-----KKLPLGTQVQPSSNTM 97

Query: 112 T----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                 N + + L     ++ ++ + A +  SAND + A G+ +SGS+ KF  LM+  ++
Sbjct: 98  KIGEESNLASVNLDSNQSYSADELLRAALQLSANDAAIALGDQVSGSQTKFVKLMTKTSQ 157

Query: 168 KIGMQNTIYKNASGL-------------HDKNQITTARDQAILGILLRKNFPQYYKYFSI 214
             G+ +  + NA+G+              +     +A D A++   + +  P+  +    
Sbjct: 158 SWGLASAQWYNAAGIRNDEAMDDGVKAPDNAENKMSAVDVALMTDNILEKTPRIKRIVHQ 217

Query: 215 RKFRYRNRIITNHNKLLNKM-----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            + ++      ++  L+        + + G K G +  SG + V    YK    + VV+ 
Sbjct: 218 SQNQFDGITQDSNYVLMKNYFKNTKYTVTGAKLGISVKSGVSYVGLFTYKGKHYITVVLH 277

Query: 270 MP 271
             
Sbjct: 278 AD 279


>gi|116617478|ref|YP_817849.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|116096325|gb|ABJ61476.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 444

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/324 (18%), Positives = 130/324 (40%), Gaps = 54/324 (16%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTA 110
             S++V+D+   Q+ G K   +    AS +KM+T Y + + ++S K+  +T +P+ SK  
Sbjct: 57  ATSALVVDLTTGQILGQKNSSKQVAIASQSKMLTAYGVLKSIKSGKIKWSTMVPITSKAD 116

Query: 111 ATQNPSKLY----LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
            ++  S L+    +K     +  +    +   SAND + A GEF++   +     + + A
Sbjct: 117 LSKEDSHLFSHIAIKAGDKVSVRELYDVMFANSANDAAFALGEFVTPKGETTQQALESWA 176

Query: 167 KKIGMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYYK-- 210
           K++ +  + + N++G  ++N                 + +  A++   + +  P   +  
Sbjct: 177 KELHLSGSQWYNSAGQVNENAFENEISSAPKTASNKASNQQLAMIARAILELDPSLRQLS 236

Query: 211 ------YFSIRKFRYRNRI------------ITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
                 Y     F   ++             ++N N+L      I+G+KTG +  SG   
Sbjct: 237 KKLTISYHMTPNFVVTDKTDYWQLMTETMPNLSNPNQL-----TIEGLKTGSSPESGAGF 291

Query: 253 VTSLR-YKDDPIVAVVMGMPT---SQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTS 308
              ++       + VV G+       +R Q++L ++      + L  +Q +      +  
Sbjct: 292 TGLIKDKNGHEFITVVNGIANYMDETKRYQESLRIVD-----QVLAQKQPNYIKENQTVG 346

Query: 309 LKKSLMIKKLKRTYSQFKKIDAKA 332
             K+L     K+ +   K    + 
Sbjct: 347 HLKTLTFPNTKQEHIIVKAAQTRH 370


>gi|302532678|ref|ZP_07285020.1| LOW QUALITY PROTEIN: penicillin binding protein PbpA [Streptomyces
           sp. C]
 gi|302441573|gb|EFL13389.1| LOW QUALITY PROTEIN: penicillin binding protein PbpA [Streptomyces
           sp. C]
          Length = 422

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 117/295 (39%), Gaps = 13/295 (4%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
            +    K  + V  V    +    + +P   AS+ K+MT Y+I +    +K     +I  
Sbjct: 60  SIPWPAKGQAAVRVVGSGTIGTVGEQKPMPTASVAKIMTAYVILKGHPLRKNEPGPKIEA 119

Query: 107 SKTAATQN----PSKL-YLKEKTYFTTEQGILALITRSANDVSTAFGEF-ISGSEKKFAI 160
              A  +      S++  L     F+    I  L+  SAN+++     +   G E  F  
Sbjct: 120 DAKAVAEGNASSESRIEGLTAGQKFSQLDMIKMLMIPSANNIARLLARWDTGGDEAAFVA 179

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN--FPQYYKYFSIRKFR 218
            M+  AK++GM NT Y + SGL D   ++TA DQ  L   + K+  F       S     
Sbjct: 180 KMNAAAKELGMTNTTYTDPSGL-DAGTVSTAVDQLKLAEAVMKDDAFRTVVAMPSAPIEG 238

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY---KDDPIVAVVMGMPTSQE 275
               +I N+  LL    NI+GIKTG +  +G  +  +       + P++   M       
Sbjct: 239 LSKPLINNNGSLLLAGLNINGIKTGSSTPAGGTLSWAAYKTVGGETPLILGTMMDQHVDG 298

Query: 276 RDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
            D      +   +++ + K  +  RK    +T ++K  ++  +         + A
Sbjct: 299 PDPDGGNSLN-LVKENSRKVIEAVRKALAPATVIRKGQLVGHVSDGLGGSTPLVA 352


>gi|256390347|ref|YP_003111911.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Catenulispora
           acidiphila DSM 44928]
 gi|256356573|gb|ACU70070.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Catenulispora
           acidiphila DSM 44928]
          Length = 348

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 94/221 (42%), Gaps = 14/221 (6%)

Query: 64  NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKLY 119
             +      EP   AS+ K+MT Y++              I V + AA +    + S   
Sbjct: 109 GSLGSSGDQEPVPIASVAKVMTAYVVLRDHPLSDGQAGPDIVVDQQAADESSLRDESSAP 168

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           +    + +    +  ++  SAN+V+   G + +G++  F   M+  A  +GM+NT Y + 
Sbjct: 169 VHAGQHLSERTLLELMLVPSANNVARLLGRWDAGTQDAFVAEMNAAAVSLGMKNTTYTDP 228

Query: 180 SGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN---RIITNHNKLLNKMHN 236
           SGL D +  +TA DQ  L  +   + P      +    +  +    ++TN + LL     
Sbjct: 229 SGL-DSSTRSTAVDQMQLAKVALTD-PVLLALTAEPATQVPDDPASLLTNTDALLGS-DG 285

Query: 237 IDGIKTGYTRNSGFNIVTSLRY----KDDPIVAVVMGMPTS 273
           + G KTG +  +G  ++ +       +D  ++ VV+   + 
Sbjct: 286 VVGGKTGSSTPAGGALMWAAHRTLDGEDHLVLGVVLHQSSG 326


>gi|227872356|ref|ZP_03990707.1| conserved hypothetical protein [Oribacterium sinus F0268]
 gi|227841785|gb|EEJ52064.1| conserved hypothetical protein [Oribacterium sinus F0268]
          Length = 222

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 89/224 (39%), Gaps = 24/224 (10%)

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA--TQNPSKLYLKEKTYFTTEQGILALITR 138
           TK+MT  +    +++    L+ +  VS ++       S  +L+     +    +  ++  
Sbjct: 1   TKLMTALVCVSSVEN----LDQEFVVSGSSVIKEAGSSTAFLQVGESLSIRNLLYGMLLP 56

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           S ND + A  E  +GS   F   M+ KA ++G  ++ + N  GL D N  T+  D  ++ 
Sbjct: 57  SGNDAAVAVAEATAGSVSAFVDRMNEKALELGCLSSHFTNPHGLPDDNHYTSPYDIYLIL 116

Query: 199 ILLRKNFPQYYKYFSIRKFRY---------RNRIITNHN------KLLNKMHNIDGIKTG 243
               K +    +  + ++ +          ++++    N      K L     I   KTG
Sbjct: 117 KECMK-YDSLREILATKEIQVQYKDKNGIPKSQVWKATNLYSTGEKELPDGLEILAAKTG 175

Query: 244 YTRNSGFNIVTSLRYKDD--PIVAVVMGMPTSQERDQKALELIT 285
            T+ +G+ +  ++       P  +VVM     +   +    L+ 
Sbjct: 176 TTKKAGYCLALTVDKASTAIPYYSVVMKGTNKENLYENMTNLLD 219


>gi|88856162|ref|ZP_01130822.1| D-alanyl-D-alanine endopeptidase [marine actinobacterium PHSC20C1]
 gi|88814481|gb|EAR24343.1| D-alanyl-D-alanine endopeptidase [marine actinobacterium PHSC20C1]
          Length = 408

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 61/284 (21%), Positives = 111/284 (39%), Gaps = 22/284 (7%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKY-------SSIVIDVNKNQMTGFKQDEPRYPASL 80
           + L+  +  +S  ++S A+   A+P+        S+I        +     +EP   AS+
Sbjct: 32  LTLLAPLGQVSATVLSAAAPELAEPELTLPSYGASAISALDRTGVLARAGSEEPLPIASI 91

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSK-------TAATQNPSKLYLKEKTYFTTEQGIL 133
           TK++T  ++ +            I   +       T   Q      + +    +  + + 
Sbjct: 92  TKVITSLVVLDAKPLAVDEAGPTITFGQPDLDYYYTQQAQFGLVWPVFDGQQLSQREVMN 151

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            ++  SAN+ + +   +  GSEK F    +   K+ G++ T    ASG+ + NQ +TA D
Sbjct: 152 VVLLASANNYAQSLAHWAFGSEKAFTAAAAQWLKEQGLEQTTLTEASGIQETNQ-STAED 210

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRN-RIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
              L  L  +N P   +  +           ++N N+LL  +  +DGIKTG   +    +
Sbjct: 211 LTELARLAIEN-PVIAEIVATPSTEVPGLGTVSNRNQLLG-IDGVDGIKTGTLEDDWACL 268

Query: 253 VTSLRY----KDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           + S       +    V VV+G P          ELI       T
Sbjct: 269 LFSADVVIGGEKKTFVGVVLGGPDHPTVAAAIRELIADATAGYT 312


>gi|45934805|gb|AAS79469.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           bikiniensis]
          Length = 231

 Score =  129 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 100/226 (44%), Gaps = 25/226 (11%)

Query: 84  MTLYIIFEYLQSKKLHLNTQ---IPVSKTAATQNP----SKLYLKEKTYFTTEQGILALI 136
           MT Y+I E      L  +     I V +TAA +      S + ++     +  + +  L+
Sbjct: 1   MTAYVILEEHP---LRPDEDGPLIEVDRTAAHEAGVGGESTVPVRSGERHSQRRLLELLL 57

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             S N+V+     + SGS+  F   M   A ++GM++T+Y  ASG+ +    +TA DQ  
Sbjct: 58  IPSGNNVARLLARWDSGSQAAFVTKMRRAAVRLGMKDTVYTGASGI-EPTTTSTAADQVR 116

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRN-RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           L     ++ P +    + R+        ITN N LL+    + G+KTG +  +G N++ +
Sbjct: 117 LTRAAMED-PVFRAVVATRETTVPGLGTITNTNPLLDT-PGVLGVKTGSSTPAGGNLLWA 174

Query: 256 --LRYKD--DPIVAVVMG-----MPTSQERD--QKALELITSFLEK 290
             +R       +V  V+       P    R   + A  L+T+  E+
Sbjct: 175 YEVRVGGAPRLLVGAVLHQRANTTPAEGLRAAVEAARGLLTAVRER 220


>gi|315634259|ref|ZP_07889546.1| serine-type D-Ala-D-Ala carboxypeptidase [Aggregatibacter segnis
           ATCC 33393]
 gi|315476849|gb|EFU67594.1| serine-type D-Ala-D-Ala carboxypeptidase [Aggregatibacter segnis
           ATCC 33393]
          Length = 292

 Score =  129 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 109/254 (42%), Gaps = 17/254 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S +V D   N++         R  AS+TK+MT  +  E+ ++ +      I   + A 
Sbjct: 18  AQSYVVYDFTHNKILESSSPHSVRPIASVTKLMTANVFLEHNKNARCT--ASITA-EDAD 74

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               +   L   T  +  + + A++  S N  + A       S ++F   M++KA+ +GM
Sbjct: 75  HIKGTSTKLPRYTPISCNELLKAMLVHSDNYAAHALSRSAGMSRQQFIKKMNDKARALGM 134

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNH 227
            +T + ++SGL + N +++  D   L      N  +  +  +I         RN  + N 
Sbjct: 135 TSTHFSDSSGLSNSN-VSSVMDLVKLAKYSLNN-AEIKRLSNISSTYIQTGKRNIFVKNT 192

Query: 228 NKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYK-DDPIVAVV-MGMPTSQERD----QKA 280
           NKL+  +M +    KTGY R SG+N+V   +   +   + V+ +   +S  R      K 
Sbjct: 193 NKLVRDEMFSAAINKTGYIRESGYNLVFVNKVPCNRATIGVISLNNISSAYRSSFTKSKL 252

Query: 281 LELITSFLEKKTLK 294
            +   + L  K L+
Sbjct: 253 EKYGCTALNSKVLR 266


>gi|295094878|emb|CBK83969.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus sp. ART55/1]
          Length = 172

 Score =  129 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S I+++ +  Q+   K  DE   PAS+TK+MTL + FE +++ ++ L+  + VS+ AA+ 
Sbjct: 63  SCILVEASTGQVLFEKNCDEAMAPASVTKVMTLLLAFEAIEAGQMTLDDIVTVSEHAASM 122

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
             S+ + +     T E  I  +I  S ND + A  
Sbjct: 123 GGSQCFFEAGEEQTVEDMIKCIIIASGNDAAVAMA 157


>gi|331091254|ref|ZP_08340095.1| hypothetical protein HMPREF9477_00738 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404701|gb|EGG84240.1| hypothetical protein HMPREF9477_00738 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 235

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 10/172 (5%)

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI------- 223
           M+NT + N +GL     +TTARD A++   L   +P+ +KY  I +    +         
Sbjct: 1   MKNTHFVNCNGLDADGHLTTARDIALMSRELITKYPEVHKYTKIWQENITHETKKGTSKF 60

Query: 224 -ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            +TN NK + +     G+KTG T  + F +  +       ++AVVM  P +++R + A+ 
Sbjct: 61  GLTNTNKFIRQYPYATGLKTGSTGKAKFCLSATAEKDKVNLIAVVMASPNAKQRVKDAVT 120

Query: 283 LITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
           L+     K   +  +      +    +K+        +   +FK ID+    
Sbjct: 121 LMNYGFGKC--RKYEDEAPIKIKEVQVKRGQEEAVDIQAEKKFKYIDSSGSD 170


>gi|254384371|ref|ZP_04999713.1| penicillin binding protein PbpA [Streptomyces sp. Mg1]
 gi|194343258|gb|EDX24224.1| penicillin binding protein PbpA [Streptomyces sp. Mg1]
          Length = 428

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 15/216 (6%)

Query: 63  KNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKL 118
              +  F + +P   AS+ K+MT Y+I +    +      QI +   A    A+++ S++
Sbjct: 81  SGDIGTFGEQKPVPTASVAKVMTAYVILKSHPLRGGDPGPQIEIDAKAVADGASEHESRV 140

Query: 119 -YLKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTI 175
             L   T F+ +  +  L+  SAN+V+     + SG  SE  F   M+  A+++GM NT 
Sbjct: 141 EGLVAGTKFSQQDMLKMLMIPSANNVARLLARWDSGTDSEAAFVEKMNAAARELGMTNTT 200

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--RIITNHNKLLN- 232
           Y + SGL     ++TA DQ  L   + K    +    ++     +     + N+N LL  
Sbjct: 201 YTDPSGLDAA-TVSTAADQLKLADAVMKE-EAFRAVVALPSAEIKGLSTPLYNNNTLLTV 258

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRY---KDDPIVA 265
              +I GIKTG +  +G  ++ +       + P++ 
Sbjct: 259 NGLSIRGIKTGSSTPAGGALMWAAYKSVGDETPLIL 294


>gi|331091259|ref|ZP_08340100.1| hypothetical protein HMPREF9477_00743 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404706|gb|EGG84245.1| hypothetical protein HMPREF9477_00743 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 125

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 65/125 (52%), Gaps = 2/125 (1%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLT 81
           ++  + ++   L L   + +   +  AK    S IV++ +  +M   K  DE   PAS+T
Sbjct: 1   MKVIVSVIISCLLLGECVYAAPQKEEAKIEAVSGIVMEASTGKMIYEKNADEKLPPASVT 60

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+MT+ +IF+ ++S ++ L   + VS+ AA+   S+++L+     T E  +  +   SAN
Sbjct: 61  KVMTMLLIFDAIESGEIKLEDNVTVSEFAASMGGSQVFLEPGETQTVETMLKCIAVASAN 120

Query: 142 DVSTA 146
           D   A
Sbjct: 121 DACVA 125


>gi|317406568|gb|EFV86761.1| hypothetical protein HMPREF0005_04939 [Achromobacter xylosoxidans
           C54]
          Length = 277

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 100/266 (37%), Gaps = 21/266 (7%)

Query: 18  PYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRY 76
           P   +  Q   +LM +       M  + + + A      +V+D         + +++   
Sbjct: 25  PAQPLSAQEAQRLMAR-------MPGVQALIEASGASHVLVLDSRSGATLFGRAENDAVP 77

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA--TQNPSKLYLKEKTYFTTEQGILA 134
            ASLTK++T  ++ +        L+ +I + +  A  T + +   L      T +  +  
Sbjct: 78  IASLTKLVTAMVVLDTSPD----LSRRIRIDERDALATASGAASPLPVGASVTLDTLLKL 133

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + A      G E  FA  +  KA  + +++T  ++A+GL + N+ + A   
Sbjct: 134 ALMASDNRAAHALARAYPGGETAFAEALQRKAAALRLEHTTLQDATGLSNANRASAADIG 193

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYR----NRIITNHNKLLN-KMHNIDGIKTGYTRNSG 249
            I+       +PQ  +  +                N N L+  +  ++   KTG +  +G
Sbjct: 194 RIIDAAA--AYPQIARDTTTLADTVEAAGSRLSYRNTNPLVGARDWDVRLSKTGNSTEAG 251

Query: 250 FNIVTSLRYKDDPIVAVVMGMPTSQE 275
             +   L   D  +  V++       
Sbjct: 252 RCLAMRLHIDDRDLTLVLLNGRAGHA 277


>gi|229824659|ref|ZP_04450728.1| hypothetical protein GCWU000282_02006 [Catonella morbi ATCC 51271]
 gi|229786030|gb|EEP22144.1| hypothetical protein GCWU000282_02006 [Catonella morbi ATCC 51271]
          Length = 454

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 60/312 (19%), Positives = 127/312 (40%), Gaps = 42/312 (13%)

Query: 25  QRNIQLMGKILFLSIIMISMAS--ELHAKP---KYSSIVIDVNKNQMTGFKQD-EPRYPA 78
           +RN+ L    L+L +  ++  +   +  +P     S+I +D    Q+   K         
Sbjct: 3   KRNLFLAFFSLWLGLQALATTAIQAVGTEPNLNAQSAIAVDAASGQILYQKNPMALLEVG 62

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILA 134
           +LTK+++L II++ L  +K+HL+ ++ +S  A         S + L++   ++  + + A
Sbjct: 63  NLTKLLSLLIIYDALDQEKIHLDDRVTLSDEAYALSQNYEISNVPLRQDLDYSVAELLEA 122

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY---------------KNA 179
           +   SAN    A  E+ +GS+  F  LM  K + I   +                   N 
Sbjct: 123 VEIGSANGALLALAEYTAGSKAAFQDLMQAKVQSILADSDKINEVDRAEWLALVPELTNL 182

Query: 180 SGLHDKNQITTARDQAILGIL--------LRKNFPQYYKYFSI-----RKFRYRNRIITN 226
           +GL ++ +   ++ Q  L  +        L  + P+      I     R+       + N
Sbjct: 183 TGLIEQEEGVASKQQNKLNAIILAAVSYQLVSHHPELLDNTKIDAKLFRQGTDDQFEMHN 242

Query: 227 HNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            N++L     +   +DG+ +  T + G+  V ++   +  ++ + +G   S +    + +
Sbjct: 243 SNQMLAGQAYEYDQVDGLMSAATAHDGYGTVQTMARDNFRVIVLTLGNSESSQSYHDSKK 302

Query: 283 LITSFLEKKTLK 294
           L+        LK
Sbjct: 303 LLDYVYGTYQLK 314


>gi|240851509|ref|ZP_04752260.1| penicillin-binding protein 7 precursor [Actinobacillus minor 202]
 gi|240310027|gb|EER48319.1| penicillin-binding protein 7 precursor [Actinobacillus minor 202]
          Length = 274

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 121/286 (42%), Gaps = 21/286 (7%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYII 89
           M K LF  ++++   S        S +V D   +++   +      P AS+TK+MT  I 
Sbjct: 1   MLKKLFSVLLIVPSFSMAQ-----SYVVYDFTHDRVLESRAPNSVQPIASVTKLMTANIF 55

Query: 90  FEYLQSKKLHLNTQIPVSKTAAT-QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
            E  ++K         +++  +     +   L + T  + ++ + A++  S N  + A  
Sbjct: 56  LENNKNKNCT----ATITEADSDFIKGTGTKLPKHTPISCDELLKAMMVHSDNYAAHALS 111

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
                +  +F   M+ KA+++GM++T + ++SGL   N I++A D   L     +  P+ 
Sbjct: 112 RSAGMTRPQFIQKMNEKAQQLGMRSTRFSDSSGLSSAN-ISSAMDLVKLARYSLQK-PKL 169

Query: 209 YKYFSIR----KFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYK-DDP 262
            +  +      +   R   + N + L+  ++ N    KTGY R SG+N+V   + + +  
Sbjct: 170 QELSNTPATLVQVGKRQVFMQNTSALVREEIFNAALNKTGYIRESGYNLVFVNKQQCNHA 229

Query: 263 IVAVV-MGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSST 307
            + V+ +   +S  R       +  +   ++L H      D     
Sbjct: 230 TIGVISLNNYSSAIRSNFTKTKLEQY-GCESLAHDDYGYADEDEDI 274


>gi|145636368|ref|ZP_01792037.1| penicillin-binding protein 7 [Haemophilus influenzae PittHH]
 gi|319775769|ref|YP_004138257.1| penicillin-binding protein 7 [Haemophilus influenzae F3047]
 gi|329123610|ref|ZP_08252170.1| serine-type D-Ala-D-Ala carboxypeptidase [Haemophilus aegyptius
           ATCC 11116]
 gi|145270533|gb|EDK10467.1| penicillin-binding protein 7 [Haemophilus influenzae PittHH]
 gi|317450360|emb|CBY86576.1| penicillin-binding protein 7 homolog precursor [Haemophilus
           influenzae F3047]
 gi|327469809|gb|EGF15274.1| serine-type D-Ala-D-Ala carboxypeptidase [Haemophilus aegyptius
           ATCC 11116]
          Length = 292

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 61/277 (22%), Positives = 119/277 (42%), Gaps = 23/277 (8%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYI 88
           +  K LF+  +  S A         S +V D   N++      +   P AS+TK+MT  +
Sbjct: 1   MFKKALFILSLCPSFAL------AQSYVVYDFTHNRVLESHASDSIQPIASVTKLMTANV 54

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
             E  ++       +I ++K    +   +   L +    +  + + A++  S N  + A 
Sbjct: 55  FLENNKNPNC----RIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAAHAL 110

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL-LRKNFP 206
              +  S ++F   M+ KA ++GM +T + ++SGL   N I++  D   L    L K+  
Sbjct: 111 SRAVGISRRQFIKKMNEKAHQLGMYSTRFHDSSGLSSYN-ISSPMDLVKLAKYSLNKSDI 169

Query: 207 QYYKYFSIRKFRYRNRIIT--NHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY--KDD 261
           +     S    +     +   N NKL+  ++ +    KTGY + SG+N+V   ++  K+ 
Sbjct: 170 KRLSNLSATYIQAGKHKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLVFINKHLCKNA 229

Query: 262 PIVAVVMGMPTSQERD----QKALELITSFLEKKTLK 294
            I  + +   +S  R      K  +   + L  +T++
Sbjct: 230 TIGVISLNNTSSAYRSSFTKSKLEKFGCTALNGRTIR 266


>gi|254387565|ref|ZP_05002804.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
 gi|326443414|ref|ZP_08218148.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
 gi|197701291|gb|EDY47103.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
          Length = 693

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 92/215 (42%), Gaps = 15/215 (6%)

Query: 72  DEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN----PSKL-YLKEKTY 125
            E   P AS  K+MT Y++      K+      I V      +      S++  L E   
Sbjct: 354 PEKSVPTASTAKIMTAYVLLRKHPLKRGEPGPTITVDAQTVAEGKAKDESRIEGLTEGQT 413

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTIYKNASGLH 183
           F+ +  +  L+  S N++      + + ++    F   M+  AK +GM+NT+Y + SGL 
Sbjct: 414 FSQQDMLKMLMIPSGNNIGRLLARWSTKTDDQTAFVREMNEAAKDLGMKNTVYTDPSGL- 472

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIITNHNKLLNKMHNIDGIK 241
           DK  ++TA DQ  L   + + +  +    ++   +     RI  N+++L+     I GIK
Sbjct: 473 DKGTVSTAVDQLKLAEAVME-YDVFRDVVALPNAEIPGHGRIYNNNDRLILAGLGIVGIK 531

Query: 242 TGYTRNSGFNIVTSLRY---KDDPIVAVVMGMPTS 273
           TG    +G  +  +       +D ++   M    +
Sbjct: 532 TGSNTPAGGTLSWAAYKTFDGEDRLILGTMMAQHA 566


>gi|118387709|ref|XP_001026957.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila]
 gi|89308727|gb|EAS06715.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila SB210]
          Length = 805

 Score =  126 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 99/248 (39%), Gaps = 48/248 (19%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI---PVSK 108
             S  V D   N +   KQ    R  ASLTK+MT Y+ ++  +S  L L+ ++    V++
Sbjct: 516 AQSWSVFDFESNSLIDGKQCYVQREVASLTKLMTFYVAYKLFES--LQLDIKLILLQVTE 573

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK----------- 157
                  +   L + T+ +       L+  S ND +      I                 
Sbjct: 574 CCTQIEGTSGKLVKDTWLSVLDLFHGLLLPSGNDCAELIAIKIGAMLDMDQNKQLNPQMD 633

Query: 158 ------------------FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
                             F + M+   K IGM +T + N +GL D N ++TA D   + I
Sbjct: 634 MYQLNSELDKRASQAKMIFIVKMNEFCKDIGMHSTFFSNVTGLPDSNNVSTAYDIECMQI 693

Query: 200 LLRK-------NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
            + +       +    Y   S +     ++I  N NKLLN  +   GIKTG T+++G  +
Sbjct: 694 PVFRQIVRKQEHIADVYDNQSEKS----DKIWFNTNKLLN--NGFCGIKTGITQSAGPCL 747

Query: 253 VTSLRYKD 260
            + ++ KD
Sbjct: 748 ASFIKIKD 755


>gi|2764670|emb|CAA04971.1| pbp2 [Streptomyces clavuligerus]
          Length = 696

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 92/215 (42%), Gaps = 15/215 (6%)

Query: 72  DEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN----PSKL-YLKEKTY 125
            E   P AS  K+MT Y++      K+      I V      +      S++  L E   
Sbjct: 357 PEKSVPTASTAKIMTAYVLLRKHPLKRGEPGPTITVDAQTVAEGKAKDESRIEGLTEGQT 416

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTIYKNASGLH 183
           F+ +  +  L+  S N++      + + ++    F   M+  AK +GM+NT+Y + SGL 
Sbjct: 417 FSQQDMLKMLMIPSGNNIGRLLARWSTKTDDQTAFVREMNEAAKDLGMKNTVYTDPSGL- 475

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIITNHNKLLNKMHNIDGIK 241
           DK  ++TA DQ  L   + + +  +    ++   +     RI  N+++L+     I GIK
Sbjct: 476 DKGTVSTAVDQLKLAEAVME-YDVFRDVVALPNAEIPGHGRIYNNNDRLILAGLGIVGIK 534

Query: 242 TGYTRNSGFNIVTSLRY---KDDPIVAVVMGMPTS 273
           TG    +G  +  +       +D ++   M    +
Sbjct: 535 TGSNTPAGGTLSWAAYKTFDGEDRLILGTMMAQHA 569


>gi|294815047|ref|ZP_06773690.1| Penicillin binding protein PbpA [Streptomyces clavuligerus ATCC
           27064]
 gi|294327646|gb|EFG09289.1| Penicillin binding protein PbpA [Streptomyces clavuligerus ATCC
           27064]
          Length = 698

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 92/215 (42%), Gaps = 15/215 (6%)

Query: 72  DEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN----PSKL-YLKEKTY 125
            E   P AS  K+MT Y++      K+      I V      +      S++  L E   
Sbjct: 359 PEKSVPTASTAKIMTAYVLLRKHPLKRGEPGPTITVDAQTVAEGKAKDESRIEGLTEGQT 418

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTIYKNASGLH 183
           F+ +  +  L+  S N++      + + ++    F   M+  AK +GM+NT+Y + SGL 
Sbjct: 419 FSQQDMLKMLMIPSGNNIGRLLARWSTKTDDQTAFVREMNEAAKDLGMKNTVYTDPSGL- 477

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIITNHNKLLNKMHNIDGIK 241
           DK  ++TA DQ  L   + + +  +    ++   +     RI  N+++L+     I GIK
Sbjct: 478 DKGTVSTAVDQLKLAEAVME-YDVFRDVVALPNAEIPGHGRIYNNNDRLILAGLGIVGIK 536

Query: 242 TGYTRNSGFNIVTSLRY---KDDPIVAVVMGMPTS 273
           TG    +G  +  +       +D ++   M    +
Sbjct: 537 TGSNTPAGGTLSWAAYKTFDGEDRLILGTMMAQHA 571


>gi|240947887|ref|ZP_04752327.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Actinobacillus
           minor NM305]
 gi|240297849|gb|EER48285.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Actinobacillus
           minor NM305]
          Length = 275

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 105/243 (43%), Gaps = 13/243 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S +V D   +++   +      P AS+TK+MT  +  E  Q++       I ++   A
Sbjct: 2   AQSYVVYDFTHDRVLESRSPNSVQPIASVTKLMTANVFLENNQNRNCA----ISITDEDA 57

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                +   L   T  + ++ + A++  S N  + A       S  +F   M+ KA+++G
Sbjct: 58  DYIKGTSTKLPTYTPISCQELLKAMLVHSDNYAAHALSRAAGMSRTQFIQKMNEKARELG 117

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGIL-LRKNFPQYYKYFSIRKFRY--RNRIITNH 227
           M++T + ++SGL   N +++  D   L    L K+  Q     +        +N  + N 
Sbjct: 118 MRSTRFSDSSGLSSAN-VSSVMDLVKLAKYSLGKSQIQILSNMAAAYIHAGRKNIFVKNT 176

Query: 228 NKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYK-DDPIVAVV-MGMPTSQERDQKALELI 284
           NKL+ +      I KTGY R SG+N+V   +   +   + V+ +   +S  R Q     +
Sbjct: 177 NKLVREELFSAAINKTGYIRESGYNLVFINKQPCNRATIGVISLNNSSSAYRSQFTKNKL 236

Query: 285 TSF 287
             +
Sbjct: 237 EQY 239


>gi|23007783|ref|ZP_00049502.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 137

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 7/136 (5%)

Query: 31  MGKILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYI 88
           M  +LF  ++  S A +++       +I+ID     +   K  DEP  PAS+ K+MT  I
Sbjct: 1   MLAVLFGLVLRPSEARAQIFQTAAVHAILIDAESGSVLFEKAADEPFSPASMAKLMTAEI 60

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQ-----NPSKLYLKEKTYFTTEQGILALITRSANDV 143
           +F  ++  +L L+++  V++ A  +       S ++ +  +       +  LI +S ND 
Sbjct: 61  VFRAIKEGRLSLDSEFTVTEDAWRRGGAGGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDA 120

Query: 144 STAFGEFISGSEKKFA 159
           +    E ++G+E+ FA
Sbjct: 121 AITIAENMAGTEEAFA 136


>gi|16272312|ref|NP_438525.1| penicillin-binding protein 7 [Haemophilus influenzae Rd KW20]
 gi|260580573|ref|ZP_05848401.1| penicillin-binding protein 7 [Haemophilus influenzae RdAW]
 gi|1172032|sp|P44664|PBP7_HAEIN RecName: Full=D-alanyl-D-alanine endopeptidase;
           Short=DD-endopeptidase; AltName: Full=Penicillin-binding
           protein 7 homolog; Short=PBP-7; Flags: Precursor
 gi|1573331|gb|AAC22022.1| penicillin-binding protein 7, putative [Haemophilus influenzae Rd
           KW20]
 gi|260092915|gb|EEW76850.1| penicillin-binding protein 7 [Haemophilus influenzae RdAW]
          Length = 292

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 61/277 (22%), Positives = 119/277 (42%), Gaps = 23/277 (8%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYI 88
           +  K LF+  +  S A         S +V D   N++      +   P AS+TK+MT  +
Sbjct: 1   MFKKALFILSLCPSFAL------AQSYVVYDFTHNRVLESHASDSIQPIASVTKLMTANV 54

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
             E  ++       +I ++K    +   +   L +    +  + + A++  S N  + A 
Sbjct: 55  FLENNKNPNC----RIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAAHAL 110

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL-LRKNFP 206
                 S ++F   M+ KA ++GM +T + ++SGL   N I++  D   L    L K+  
Sbjct: 111 SRAAGISRRQFIKKMNEKAHQLGMYSTRFHDSSGLSSYN-ISSPMDLVKLAKYSLNKSDI 169

Query: 207 QYYKYFSIRKFRYRNRIIT--NHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY--KDD 261
           +     S    +   + +   N NKL+  ++ +    KTGY + SG+N+V   ++  K+ 
Sbjct: 170 KRLSNLSATYIQAGKQKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLVFINKHRCKNA 229

Query: 262 PIVAVVMGMPTSQERD----QKALELITSFLEKKTLK 294
            I  + +   +S  R      K  +   + L  +T++
Sbjct: 230 TIGVISLNNTSSAYRSSFTKSKLEKFGCTALNGRTIR 266


>gi|145632611|ref|ZP_01788345.1| adenylate kinase [Haemophilus influenzae 3655]
 gi|144986806|gb|EDJ93358.1| adenylate kinase [Haemophilus influenzae 3655]
 gi|309972477|gb|ADO95678.1| Putative penicillin-binding protein 7 [Haemophilus influenzae
           R2846]
          Length = 292

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 61/277 (22%), Positives = 118/277 (42%), Gaps = 23/277 (8%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYI 88
           +  K LF+  +  S A         S +V D   N++      +   P AS+TK+MT  +
Sbjct: 1   MFKKALFILSLCPSFAL------AQSYVVYDFTHNRVLESHASDSIQPIASVTKLMTANV 54

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
             E  ++       +I ++K    +   +   L +    +  + + A++  S N  + A 
Sbjct: 55  FLENNKNPNC----RIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAAHAL 110

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL-LRKNFP 206
                 S ++F   M+ KA ++GM +T + ++SGL   N I++  D   L    L K+  
Sbjct: 111 SRAAGISRRQFIKKMNEKAHQLGMYSTRFHDSSGLSSYN-ISSPMDLVKLAKYSLNKSDI 169

Query: 207 QYYKYFSIRKFRYRNRIIT--NHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY--KDD 261
           +     S    +     +   N NKL+  ++ +    KTGY + SG+N+V   ++  K+ 
Sbjct: 170 KRLSNLSATYIQAGKHKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLVFINKHRCKNA 229

Query: 262 PIVAVVMGMPTSQERD----QKALELITSFLEKKTLK 294
            I  + +   +S  R      K  +   + L  +T++
Sbjct: 230 TIGVISLNNTSSAYRSSFTKSKLEKFGCTALNGRTIR 266


>gi|331084015|ref|ZP_08333122.1| hypothetical protein HMPREF0992_02046 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330402377|gb|EGG81947.1| hypothetical protein HMPREF0992_02046 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 316

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 96/230 (41%), Gaps = 21/230 (9%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV--SKTAATQNPSKLYLKEKTYFTTEQ 130
           E   P  +T++MT  +  E     +L+L  +  +        +      L+E  + T +Q
Sbjct: 89  EKIEPGKVTQLMTALLAVE-----RLNLEDEAVIEGDDRVYGKEARGCGLQEGYHVTVKQ 143

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            + A++  SA D   A      GS++ F  LM+ +A ++GM NT Y N++G     Q TT
Sbjct: 144 LLNAVLVSSAEDACQALARLTGGSQEAFVTLMNERATELGMTNTHYANSTGYTSDEQYTT 203

Query: 191 ARDQAILGILLRK--------NFPQYYKYFSIRKFRYRNRIITNHNKL------LNKMHN 236
             D  +L     K        + P Y   ++  K   + R + + N        + K   
Sbjct: 204 VYDIYLLLNEFLKYPDLLNAMSLPDYTINYTTPKDELKQRWLDSDNPFTAGKVTIPKDVT 263

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           + G KT  ++++ +  + +     +  +++V    T     ++  E+++ 
Sbjct: 264 VLGGKTFTSKSNNYAALLTQNKYGEFYISIVFHAETESALMERMSEMLSQ 313


>gi|145631817|ref|ZP_01787576.1| penicillin-binding protein 7 [Haemophilus influenzae R3021]
 gi|144982536|gb|EDJ90090.1| penicillin-binding protein 7 [Haemophilus influenzae R3021]
          Length = 292

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 61/277 (22%), Positives = 118/277 (42%), Gaps = 23/277 (8%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYI 88
           +  K LF+  +  S A         S +V D   N++      +   P AS+TK+MT  +
Sbjct: 1   MFKKALFILSLCPSFAL------AQSYVVYDFTHNRVLESHASDSIQPIASVTKLMTANV 54

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
             E  ++       +I ++K    +   +   L +    +  + + A++  S N  + A 
Sbjct: 55  FLENNKNPNC----RIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAAHAL 110

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL-LRKNFP 206
                 S ++F   M+ KA ++GM +T + ++SGL   N I++  D   L    L K+  
Sbjct: 111 SRAAGISRRQFIKKMNEKAHQLGMYSTRFHDSSGLSSYN-ISSPMDLVKLAKYSLNKSDI 169

Query: 207 QYYKYFSIRKFRYRNRIIT--NHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY--KDD 261
           +     S    +     +   N NKL+  ++ +    KTGY + SG+N+V   ++  K+ 
Sbjct: 170 KRLSNLSATYIQAGKHKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLVFINKHLCKNA 229

Query: 262 PIVAVVMGMPTSQERD----QKALELITSFLEKKTLK 294
            I  + +   +S  R      K  +   + L  +T++
Sbjct: 230 TIGVISLNNTSSAYRSSFTKSKLEKFGCTALNGRTIR 266


>gi|229846451|ref|ZP_04466559.1| hypothetical protein CGSHi7P49H1_07260 [Haemophilus influenzae
           7P49H1]
 gi|229810544|gb|EEP46262.1| hypothetical protein CGSHi7P49H1_07260 [Haemophilus influenzae
           7P49H1]
          Length = 292

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 61/277 (22%), Positives = 118/277 (42%), Gaps = 23/277 (8%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYI 88
           +  K LF+  +  S A         S +V D   N++      +   P AS+TK+MT  +
Sbjct: 1   MFKKALFILSLCPSFAL------AQSYVVYDFTHNRVLESHASDSIQPIASVTKLMTANV 54

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
             E  ++       +I ++K    +   +   L +    +  + + A++  S N  + A 
Sbjct: 55  FLENNKNPNC----RIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAAHAL 110

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL-LRKNFP 206
                 S ++F   M+ KA ++GM +T + ++SGL   N I++  D   L    L K+  
Sbjct: 111 SRAAGISRRQFINKMNEKAHQLGMYSTRFHDSSGLSSYN-ISSPMDLVKLAKYSLNKSDI 169

Query: 207 QYYKYFSIRKFRYRNRIIT--NHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY--KDD 261
           +     S    +     +   N NKL+  ++ +    KTGY + SG+N+V   ++  K+ 
Sbjct: 170 KRLSNLSATYIQAGKHKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLVFINKHPCKNA 229

Query: 262 PIVAVVMGMPTSQERD----QKALELITSFLEKKTLK 294
            I  + +   +S  R      K  +   + L  +T++
Sbjct: 230 TIGVISLNNTSSAYRSSFTKSKLEKFGCTALNGRTIR 266


>gi|223041814|ref|ZP_03612004.1| penicillin-binding protein 7 precursor [Actinobacillus minor 202]
 gi|223017383|gb|EEF15804.1| penicillin-binding protein 7 precursor [Actinobacillus minor 202]
          Length = 291

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 61/261 (23%), Positives = 111/261 (42%), Gaps = 21/261 (8%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYL 93
           LF  + ++SMA         S +V D   +++   +      P AS+TK+MT  +  E  
Sbjct: 8   LFALLPVVSMA--------QSYVVYDFTHDRVLESRSPNSVQPIASVTKLMTANVFLENN 59

Query: 94  QSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           Q++       I ++   A     +   L   T  + ++ + A++  S N  + A      
Sbjct: 60  QNRNCA----ISITDEDADYIKGTSTKLPTYTPISCQELLKAMLVHSDNYAAHALSRAAG 115

Query: 153 GSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL-LRKNFPQYYKY 211
            S  +F   M+ KA+++GM++T + ++SGL   N +++  D   L    L K+  Q    
Sbjct: 116 MSRTQFIQKMNEKARELGMRSTRFSDSSGLSSAN-VSSVMDLVKLAKYSLGKSQIQVLSN 174

Query: 212 FSIRKFRY--RNRIITNHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRY--KDDPIVAV 266
            +        +N  + N NKL+ +      I KTGY R SG+N+V   +       I  +
Sbjct: 175 MAAAYIHAGRKNIFVKNTNKLVREELFSAAINKTGYIRESGYNLVFINKQPCNSATIGVI 234

Query: 267 VMGMPTSQERDQKALELITSF 287
            +   +S  R Q     +  +
Sbjct: 235 SLNNSSSAYRSQFTKNKLEQY 255


>gi|260582544|ref|ZP_05850334.1| penicillin-binding protein 7 [Haemophilus influenzae NT127]
 gi|260094355|gb|EEW78253.1| penicillin-binding protein 7 [Haemophilus influenzae NT127]
          Length = 292

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 61/277 (22%), Positives = 118/277 (42%), Gaps = 23/277 (8%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYI 88
           +  K LF+  +  S A         S +V D   N++      +   P AS+TK+MT  +
Sbjct: 1   MFKKALFILSLCPSFAL------AQSYVVYDFTHNRVLESHASDSIQPIASVTKLMTANV 54

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
             E  ++       +I ++K    +   +   L +    +  + + A++  S N  + A 
Sbjct: 55  FLENNKNPNC----RIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAAHAL 110

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL-LRKNFP 206
                 S ++F   M+ KA ++GM +T + ++SGL   N I++  D   L    L K+  
Sbjct: 111 SRAAGISRRQFINKMNEKAHQLGMYSTRFHDSSGLSSYN-ISSPMDLVKLAKYSLNKSDI 169

Query: 207 QYYKYFSIRKFRYRNRIIT--NHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY--KDD 261
           +     S    +     +   N NKL+  ++ +    KTGY + SG+N+V   ++  K+ 
Sbjct: 170 KRLSNLSATYIQAGKHKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLVFINKHLCKNA 229

Query: 262 PIVAVVMGMPTSQERD----QKALELITSFLEKKTLK 294
            I  + +   +S  R      K  +   + L  +T++
Sbjct: 230 TIGVISLNNTSSAYRSSFTKSKLEKFGCTALNGRTIR 266


>gi|227432858|ref|ZP_03914813.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227351385|gb|EEJ41656.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 251

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 102/236 (43%), Gaps = 28/236 (11%)

Query: 59  IDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----Q 113
           ++ + +++   K    P   AS++K+MT Y++      KKL L TQ+  S          
Sbjct: 1   MNADTDKILSEKNAHKPLAIASISKLMTGYLVL-----KKLPLGTQVQPSSNTMKIGEES 55

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           N + + L     ++ ++ + A +  SAND + A G+ +SGS+ KF  LM+  ++  G+ +
Sbjct: 56  NLASVNLVSNQSYSADELLRAALQLSANDAAIALGDQVSGSQTKFVKLMTKTSQSWGLAS 115

Query: 174 TIYKNASGL-------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
             + NA+G+              +     +A D A++   + +  P+  +     + ++ 
Sbjct: 116 AQWYNAAGIRNDEAMDDDVKAPDNAENKMSAVDVALMTDNILEKTPRIKRIVHQSQNQFD 175

Query: 221 NRIITNHNKLLNKM-----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
                ++  L+        + + G K G +  SG + V    YK    + VV+   
Sbjct: 176 GITQDSNYVLMKNYFKNTKYTVTGAKLGISVKSGVSYVGLFTYKGKHYITVVLHAD 231


>gi|145640314|ref|ZP_01795898.1| adenylate kinase [Haemophilus influenzae R3021]
 gi|145274900|gb|EDK14762.1| adenylate kinase [Haemophilus influenzae 22.4-21]
          Length = 292

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 118/277 (42%), Gaps = 23/277 (8%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYI 88
           +  K LF+  +  S A         S +V D   N++      +   P AS+TK+MT  +
Sbjct: 1   MFKKALFILSLCPSFAL------AQSYVVYDFTHNRVLESHAPDSIQPIASVTKLMTANV 54

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
             E  ++       +I ++K    +   +   L +    +  + + A++  S N  + A 
Sbjct: 55  FLENNKNPNC----RIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAAHAL 110

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL-LRKNFP 206
                 S ++F   M+ KA ++GM +T + ++SGL   N I++  D   L    L K+  
Sbjct: 111 SRAAGISRRQFINKMNEKAHQLGMYSTRFHDSSGLSSYN-ISSPMDLVKLAKYSLNKSDI 169

Query: 207 QYYKYFSIRKFRYRNRIIT--NHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY--KDD 261
           +     +    +     +   N NKL+  ++ +    KTGY + SG+N+V   ++  K+ 
Sbjct: 170 KRLSNLNATYIQAGKHKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLVFINKHLCKNA 229

Query: 262 PIVAVVMGMPTSQERD----QKALELITSFLEKKTLK 294
            I  + +   +S  R      K  +   + L  +T++
Sbjct: 230 TIGVISLNNTSSAYRSSFTKSKLEKFGCTALNGRTIR 266


>gi|325577791|ref|ZP_08148066.1| serine-type D-Ala-D-Ala carboxypeptidase [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160536|gb|EGC72662.1| serine-type D-Ala-D-Ala carboxypeptidase [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 291

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/258 (22%), Positives = 113/258 (43%), Gaps = 21/258 (8%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYI 88
           ++ K+L +  ++ ++A+        S IV D   +++      +  +  AS+TK+MT  +
Sbjct: 1   MLKKVLSVLCLVPAVAT------AQSYIVYDFTHDRVLESSSPNHVQPIASVTKLMTANV 54

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
             E  ++        I        +  +   L + T  +  + + A++  S N  + A  
Sbjct: 55  FLENNRNANCT--ASITDDDYDYIK-GTHTKLPKYTPISCNELLKAMLVHSDNYAAHALS 111

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
                S  +F   M+ KA+++GM++T + ++SGL D N I++A D   L      N  Q 
Sbjct: 112 RSAGMSRLQFIQKMNEKARELGMRSTRFSDSSGLSDSN-ISSAMDLVKLAKYSL-NKTQI 169

Query: 209 YKYFSIRK--FRYRNR--IITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYK--DD 261
               ++     +   R   + N NKL+  ++ +    KTGY R SG+N+V  +     + 
Sbjct: 170 KNLSNMPSAFIQAGGRSVFVKNTNKLVREEVFDAAVNKTGYIRESGYNLVF-VNKNPCNH 228

Query: 262 PIVAVV-MGMPTSQERDQ 278
             + V+ +   +S  R  
Sbjct: 229 STIGVISLNNHSSAFRSN 246


>gi|46203464|ref|ZP_00208979.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 215

 Score =  124 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 55/103 (53%)

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRN 247
           + TARD ++L   L  +FP+YY  FS  +F +      N N LL      DG+KTG+T  
Sbjct: 1   MMTARDLSVLARHLIGDFPEYYPLFSQMEFVFNGIKQGNRNPLLYNTPGADGLKTGHTEA 60

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           +G+ +  S++  +  I+ V+ GM + +ER +++  L      +
Sbjct: 61  AGYGLTASIKRGNRRIIMVLNGMSSMKERAEESRRLTEWAFRE 103


>gi|3328163|gb|AAC32488.1| penicillin binding protein PbpA [Streptomyces clavuligerus ATCC
           27064]
          Length = 409

 Score =  124 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 92/215 (42%), Gaps = 15/215 (6%)

Query: 72  DEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN----PSKL-YLKEKTY 125
            E   P AS  K+MT Y++      K+      I V      +      S++  L E   
Sbjct: 70  PEKSVPTASTAKIMTAYVLLRKHPLKRGEPGPTITVDAQTVAEGKAKDESRIEGLTEGQT 129

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTIYKNASGLH 183
           F+ +  +  L+  S N++      + + ++    F   M+  AK +GM+NT+Y + SGL 
Sbjct: 130 FSQQDMLKMLMIPSGNNIGRLLARWSTKTDDQTAFVREMNEAAKDLGMKNTVYTDPSGL- 188

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIR--KFRYRNRIITNHNKLLNKMHNIDGIK 241
           DK  ++TA DQ  L   + + +  +    ++   +     RI  N+++L+     I GIK
Sbjct: 189 DKGTVSTAVDQLKLAEAVME-YDVFRDVVALPNAEIPGHGRIYNNNDRLILAGLGIVGIK 247

Query: 242 TGYTRNSGFNIVTSLRY---KDDPIVAVVMGMPTS 273
           TG    +G  +  +       +D ++   M    +
Sbjct: 248 TGSNTPAGGTLSWAAYKTFDGEDRLILGTMMAQHA 282


>gi|251792511|ref|YP_003007237.1| DacC protein [Aggregatibacter aphrophilus NJ8700]
 gi|247533904|gb|ACS97150.1| DacC protein [Aggregatibacter aphrophilus NJ8700]
          Length = 302

 Score =  124 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/285 (20%), Positives = 113/285 (39%), Gaps = 24/285 (8%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S +V D   N++         R  AS+TK+MT  +  E+ ++ +   +    ++    
Sbjct: 28  AQSYVVYDFTHNKVLESGAPNTVRPIASVTKLMTANVFLEHNKNPRCTAS----ITNEDY 83

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                +   L + T     + + A++  S N  + A       + ++F   M+ KAK +G
Sbjct: 84  DYIKGTHTKLPKYTPIACRELLKAMLVHSDNYAAHALSRSAGMTRQQFIKKMNEKAKHLG 143

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITN 226
           M++T + ++SGL + N +++A D   L        P+     ++         RN  + N
Sbjct: 144 MRSTRFSDSSGLSNSN-VSSAMDLVKLAKYSLAK-PEIKALSNLSTAYIQAGKRNIFVKN 201

Query: 227 HNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYK-DDPIVAVV-MGMPTSQERDQKALEL 283
            NKL+  +M +    KTGY R SG+N+V       +   + V+ +   +S  R       
Sbjct: 202 TNKLVRDEMFSAAINKTGYIRESGYNLVFVNSVPCNRATIGVISLNNSSSAFR------- 254

Query: 284 ITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKI 328
             S   K  L+       +     S +  +  ++        + I
Sbjct: 255 --SNFTKSKLEKYGCTVLNGRKFKSFEDDIQYEEGYDEQGMDELI 297


>gi|148827504|ref|YP_001292257.1| hypothetical protein CGSHiGG_04625 [Haemophilus influenzae PittGG]
 gi|148718746|gb|ABQ99873.1| hypothetical protein CGSHiGG_04625 [Haemophilus influenzae PittGG]
          Length = 292

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 110/254 (43%), Gaps = 17/254 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S +V D   N++      +   P AS+TK+MT  +  E  ++       +I ++K   
Sbjct: 18  AQSYVVYDFTHNRVLESHASDSIQPIASVTKLMTANVFLENNKNPNC----RIAITKEDT 73

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   +   L +    +  + + A++  S N  + A       S ++F   M+ KA ++G
Sbjct: 74  DRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAAHALSRAAGISRRQFIKKMNEKAHQLG 133

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGIL-LRKNFPQYYKYFSIRKFRYRNRIIT--NH 227
           M +T + ++SGL   N I++  D   L    L K+  +     S    +     +   N 
Sbjct: 134 MYSTRFHDSSGLSSYN-ISSPMDLVKLAKYSLNKSDIKRLSNLSATYIQAGEHKLYIKNT 192

Query: 228 NKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY--KDDPIVAVVMGMPTSQERD----QKA 280
           NKL+  ++ +    KTGY + SG+N+V   ++  K+  I  + +   +S  R      K 
Sbjct: 193 NKLVRDEIFDAAVNKTGYIQESGYNLVFINKHPCKNATIGVISLNNTSSAYRSSFTKSKL 252

Query: 281 LELITSFLEKKTLK 294
            +   + L  +T++
Sbjct: 253 EKFGCTALNGRTIR 266


>gi|319896693|ref|YP_004134886.1| penicillin-binding protein 7 homolog precursor [Haemophilus
           influenzae F3031]
 gi|317432195|emb|CBY80547.1| penicillin-binding protein 7 homolog precursor [Haemophilus
           influenzae F3031]
          Length = 292

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 118/277 (42%), Gaps = 23/277 (8%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYI 88
           +  K LF+  +  S A         S +V D   N++      +   P AS+TK+MT  +
Sbjct: 1   MFKKALFILSLCPSFAL------AQSYVVYDFTHNRVLESHASDSIQPIASVTKLMTANV 54

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
             E  ++       +I ++K    +   +   L +    +  + + A++  S N  + A 
Sbjct: 55  FLENNKNPNC----RIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAAHAL 110

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL-LRKNFP 206
                 S ++F   M+ KA ++GM +T + ++SGL   N I++  D   L    L K+  
Sbjct: 111 SRAAGISRRQFINKMNEKAHQLGMYSTRFHDSSGLSSYN-ISSPMDLVKLAKYSLNKSDI 169

Query: 207 QYYKYFSIRKFRYRNRIIT--NHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY--KDD 261
           +     +    +     +   N NKL+  ++ +    KTGY + SG+N+V   ++  K+ 
Sbjct: 170 KRLSNLNATYIQAGKHKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLVFINKHLCKNA 229

Query: 262 PIVAVVMGMPTSQERD----QKALELITSFLEKKTLK 294
            I  + +   +S  R      K  +   + L  +T++
Sbjct: 230 TIGVISLNNTSSAYRSSFTKSKLEKFGCTALNGRTIR 266


>gi|293389974|ref|ZP_06634308.1| DacC protein [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290950508|gb|EFE00627.1| DacC protein [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 293

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 109/256 (42%), Gaps = 20/256 (7%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S +V D   N++         R  AS+TK+MT  +  E+ ++ +   +    ++    
Sbjct: 18  AQSYVVYDFTHNKVLESGAPNTVRPIASVTKLMTANVFLEHNKNPRCTAS----ITDDDF 73

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                +   L + T  +  + +  ++  S N  + A       +  +F   M+ KA+++G
Sbjct: 74  DYIKGTHTKLPKYTPISCRELLKMMLVHSDNYAAHALSRSAGMTRLQFIGKMNEKARQLG 133

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITN 226
           M++T + ++SGL + N +++  D   L     K   +   + +I         RN  + N
Sbjct: 134 MKSTRFSDSSGLSNHN-VSSVMDLVKLTKYSMKK-TEIKAFSNISSTYVKAGKRNVFVKN 191

Query: 227 HNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY--KDDPIVAVV-MGMPTSQERD----Q 278
            NKL+  +M +    KTGY R SG+N+V   +    +   + V+ +   +S  R      
Sbjct: 192 TNKLVRDEMFSAAINKTGYIRESGYNLVFVNKVPCNNRATIGVISLNNSSSAYRSSFTKN 251

Query: 279 KALELITSFLEKKTLK 294
           K  +   + L  K L+
Sbjct: 252 KLEKYGCTALNSKVLR 267


>gi|68248967|ref|YP_248079.1| penicillin-binding protein 7-like protein [Haemophilus influenzae
           86-028NP]
 gi|68057166|gb|AAX87419.1| penicillin-binding protein 7 homolog precursor [Haemophilus
           influenzae 86-028NP]
          Length = 292

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 110/254 (43%), Gaps = 17/254 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S +V D   N++      +   P AS+TK+MT  +  E  ++       +I ++K   
Sbjct: 18  AQSYVVYDFTHNRVLESYAPDSIQPIASVTKLMTANVFLENNKNPNC----RIAITKEDT 73

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   +   L +    +  + + A++  S N  + A       S ++F   M+ KA ++G
Sbjct: 74  DRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAAHALSRAAGISRRQFINKMNEKAHQLG 133

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGIL-LRKNFPQYYKYFSIRKFRYRNRIIT--NH 227
           M +T + ++SGL   N I++  D   L    L K+  +     S    +     +   N 
Sbjct: 134 MYSTRFHDSSGLSSYN-ISSPMDLVKLAKYSLNKSDIKLLSNLSATYIQAGKHKLYIKNT 192

Query: 228 NKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY--KDDPIVAVVMGMPTSQERD----QKA 280
           NKL+  ++ +    KTGY R SG+N+V   ++  K+  I  + +   +S  R      K 
Sbjct: 193 NKLVRDEIFDAAVNKTGYIRESGYNLVFINKHLCKNATIGVISLNNTSSAYRSSFTKSKL 252

Query: 281 LELITSFLEKKTLK 294
            +   + L  +T++
Sbjct: 253 EKFGCTALNGRTIR 266


>gi|145634640|ref|ZP_01790349.1| penicillin-binding protein 7 [Haemophilus influenzae PittAA]
 gi|229844548|ref|ZP_04464688.1| penicillin-binding protein 7 [Haemophilus influenzae 6P18H1]
 gi|145268185|gb|EDK08180.1| penicillin-binding protein 7 [Haemophilus influenzae PittAA]
 gi|229812797|gb|EEP48486.1| penicillin-binding protein 7 [Haemophilus influenzae 6P18H1]
          Length = 292

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 110/254 (43%), Gaps = 17/254 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S +V D   N++      +   P AS+TK+MT  +  E  ++       +I ++K   
Sbjct: 18  AQSYVVYDFTHNRVLESHASDSIQPIASVTKLMTANVFLENNKNPNC----RIAITKEDT 73

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   +   L +    +  + + A++  S N  + A       S ++F   M+ KA ++G
Sbjct: 74  DRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAAHALSRAAGISRRQFIKKMNEKAHQLG 133

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGIL-LRKNFPQYYKYFSIRKFRYRNRIIT--NH 227
           M +T + ++SGL   N I++  D   L    L K+  +     S    +     +   N 
Sbjct: 134 MYSTRFHDSSGLSSYN-ISSPMDLVKLAKYSLNKSDIKRLSNLSATYIQAGKHKLYIKNT 192

Query: 228 NKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY--KDDPIVAVVMGMPTSQERD----QKA 280
           NKL+  ++ +    KTGY + SG+N+V   ++  K+  I  + +   +S  R      K 
Sbjct: 193 NKLVRDEIFDAAVNKTGYIQESGYNLVFINKHRCKNATIGVISLNNTSSAYRSSFTKSKL 252

Query: 281 LELITSFLEKKTLK 294
            +   + L  +T++
Sbjct: 253 EKFGCTALNGRTIR 266


>gi|145628720|ref|ZP_01784520.1| adenylate kinase [Haemophilus influenzae 22.1-21]
 gi|145638727|ref|ZP_01794336.1| hypothetical protein CGSHiII_08431 [Haemophilus influenzae PittII]
 gi|144979190|gb|EDJ88876.1| adenylate kinase [Haemophilus influenzae 22.1-21]
 gi|145272322|gb|EDK12230.1| hypothetical protein CGSHiII_08431 [Haemophilus influenzae PittII]
 gi|301169066|emb|CBW28663.1| penicillin-binding protein 7 homolog precursor [Haemophilus
           influenzae 10810]
 gi|309750217|gb|ADO80201.1| Putative penicillin-binding protein 7 [Haemophilus influenzae
           R2866]
          Length = 292

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 118/277 (42%), Gaps = 23/277 (8%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYI 88
           +  K LF+  +  S +         S +V D   N++      +   P AS+TK+MT  +
Sbjct: 1   MFKKALFILSLCPSFSL------AQSYVVYDFTHNRVLESHAPDSIQPIASVTKLMTANV 54

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
             E  ++       +I ++K    +   +   L +    +  + + A++  S N  + A 
Sbjct: 55  FLENNKNPNC----RIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAAHAL 110

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL-LRKNFP 206
                 S ++F   M+ KA ++GM +T + ++SGL   N I++  D   L    L K+  
Sbjct: 111 SRAAGISRRQFINKMNEKAHQLGMYSTRFHDSSGLSSYN-ISSPMDLVKLAKYSLNKSDI 169

Query: 207 QYYKYFSIRKFRYRNRIIT--NHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY--KDD 261
           +     +    +     +   N NKL+  ++ +    KTGY + SG+N+V   ++  K+ 
Sbjct: 170 KRLSNLNATYIQAGKHKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLVFINKHLCKNA 229

Query: 262 PIVAVVMGMPTSQERD----QKALELITSFLEKKTLK 294
            I  + +   +S  R      K  +   + L  +T++
Sbjct: 230 TIGVISLNNTSSAYRSSFTKSKLEKFGCTALNGRTIR 266


>gi|167465655|ref|ZP_02330744.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 275

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 85/208 (40%), Gaps = 43/208 (20%)

Query: 165 KAKKIGM-QNTIYKNASGLH------------DKNQITTARDQAILGILLRKNFPQYYKY 211
           KAK++G+ +   + NA+GL             +   + TARD AIL   +  + PQ  ++
Sbjct: 1   KAKELGLSEGAHFINATGLTRADLGQYAPKNIEGETMMTARDAAILARHIVLDHPQVLEF 60

Query: 212 FSIRKFRYR---NRIITNHNKLLNK-----------MHNIDGIKTGYTRNSGFNIVTSLR 257
                 + R      + N N +L                +DG+KTG+T  +G+    + +
Sbjct: 61  TKTTSKKLRETDKTPMINFNWMLEGNKGNINFKPYAYDGLDGLKTGHTNEAGYCFTGTAQ 120

Query: 258 YKDDPIVAVVMGMPTSQERDQKALELITSFL----------------EKKTLKHQQTHRK 301
             D  +++VVMG  +  +R Q+  +++                    E+KT+K  +  +K
Sbjct: 121 RGDMRLISVVMGTNSEPKRFQETRKVLDYGFNNFEMRKVLDANAPVEEQKTVKISKGVKK 180

Query: 302 DNLSSTSLKKSLMIKKLKRTYSQFKKID 329
           +  +      S ++KK         K+D
Sbjct: 181 EIEAGVKEPVSFVVKKGSGDVKVTGKVD 208


>gi|260587695|ref|ZP_05853608.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
           20583]
 gi|260541960|gb|EEX22529.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
           20583]
          Length = 334

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 96/230 (41%), Gaps = 21/230 (9%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV--SKTAATQNPSKLYLKEKTYFTTEQ 130
           E   P  +T++MT  +  E     +L+L  +  +        +      L+E  + T +Q
Sbjct: 107 EKTEPGKVTQLMTALLAVE-----RLNLEDEAVIEGDDRVYGKEARGCGLQEGYHVTVKQ 161

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            + A++  SA D   A      GS++ F  LM+ +A ++GM NT Y N++G     Q TT
Sbjct: 162 LLNAVLVSSAEDACQALARLTGGSQEAFVTLMNERATELGMTNTHYANSTGYTSDEQYTT 221

Query: 191 ARDQAILGILLRK--------NFPQYYKYFSIRKFRYRNRIITNHNKL------LNKMHN 236
             D  +L     K        + P Y   ++  K   + R + + N        + K   
Sbjct: 222 VYDIYLLLNEFLKYPDLLNAMSLPDYTINYTTPKDELKQRWLDSDNPFTAGKVTIPKDVT 281

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           + G KT  ++++ +  + +     +  +++V    T     ++  E+++ 
Sbjct: 282 VLGGKTFTSKSNNYAALLTQNKYGEFYISIVFHAETESALMERMSEMLSQ 331


>gi|94267082|ref|ZP_01290721.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [delta
           proteobacterium MLMS-1]
 gi|93452219|gb|EAT02875.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [delta
           proteobacterium MLMS-1]
          Length = 209

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 4/168 (2%)

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
              +     + A++ RSAND + A  E I+G+E+ FA LM++K + +G  NT  +NA+GL
Sbjct: 7   GRSYRAGDLVDAILMRSANDAAVALAEKIAGNERAFARLMTSKVRAMGANNTTLRNANGL 66

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKT 242
             + Q +TARD A++     +  P+  +           + +   N+ L +++   G KT
Sbjct: 67  TAQGQQSTARDLALILHRAME-HPELAQRLGTVSTNGLGQTMRTSNRALWQINGSQGGKT 125

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           G+TR +    V   +  +  ++  +MG  T  +      +L+    ++
Sbjct: 126 GFTRAAQQTYVGKFQRGNHELIVALMGSTTMWD---DVRQLVNYGFQQ 170


>gi|261867997|ref|YP_003255919.1| DacC protein [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413329|gb|ACX82700.1| DacC protein [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 292

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 59/276 (21%), Positives = 118/276 (42%), Gaps = 22/276 (7%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYII 89
           M K +F S+ ++   +        S +V D   N++         R  AS+TK+MT  + 
Sbjct: 1   MLKKVFPSLFLLPAVAMAQ-----SYVVYDFTHNKVLESSAPNTVRPIASVTKLMTANVF 55

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            E+ ++ +      I        +  ++  L + T  +  + +  ++  S N  + A   
Sbjct: 56  LEHNKNPRCT--ASITDDDYDYIK-GTRTKLPKYTPISCRELLKMMLVHSDNYAAHALSR 112

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209
               +  +F   M+ KA+++GM++T + ++SGL   N +++A D   L        P+  
Sbjct: 113 SAGMTRLQFIGKMNEKARQLGMKSTCFSDSSGLSTHN-VSSAMDLVKLTKYSMSK-PEIK 170

Query: 210 KYFSIRKFRY----RNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYK-DDPI 263
            + ++         R+  + N NKL+  +M +    KTGY R SG+N+V   +   +   
Sbjct: 171 AFSNLSSTYVQAGKRSVFVKNTNKLVRDEMFSAAINKTGYIRESGYNLVFVNKVPCNRAT 230

Query: 264 VAVV-MGMPTSQERD----QKALELITSFLEKKTLK 294
           + V+ +   +S  R      K  +   + L  K L+
Sbjct: 231 IGVISLNNSSSAYRSSFTKNKLEKYGCTALNSKVLR 266


>gi|313631512|gb|EFR98800.1| D-alanyl-D-alanine carboxypeptidase DacA [Listeria seeligeri FSL
           N1-067]
          Length = 305

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 87/213 (40%), Gaps = 30/213 (14%)

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-------------QITTARDQAIL 197
           I+GSEK+F  +M+ KA+++ +    + NA+GL++++                TAR  A L
Sbjct: 2   IAGSEKEFVAMMNKKAEELKLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTARGMAKL 61

Query: 198 GILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNKM----HNIDGIKTGYTRNS 248
              L  ++P+  K  S  K  +R        +TN N LL  +      +DG+KTG T  +
Sbjct: 62  AKHLINDYPEVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTGTTDYA 121

Query: 249 GFNIVTSLRYKDDPIVAVVMGM------PTSQERDQKALELITSFLEKKTLKHQQT--HR 300
           G  +  +       ++ VV+          +  R  +  +++        +K  Q    +
Sbjct: 122 GMCLTATAVQDGMRVITVVLHANGGGEGEHTSARFDETNKMLDYSFNNFKVKEVQKAGAK 181

Query: 301 KDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAH 333
             + S+ ++ K         T  + K +  K  
Sbjct: 182 VKDPSTIAVDKGKEETVGLVTKDEVKLVVPKNG 214


>gi|325473431|gb|EGC76626.1| hypothetical protein HMPREF9353_02421 [Treponema denticola F0402]
          Length = 303

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 16/208 (7%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           EL      S I+I  N   +      +    PASLTK++T+Y + +  + K L     + 
Sbjct: 94  ELPKIDADSYILIHANTGTILAESNADKIIPPASLTKLVTIYTMLQKPEFKDLK--KVVF 151

Query: 106 VSKTAAT----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
             K A      +  + + L E    + E+ I  +   S ND + A      GS +KF + 
Sbjct: 152 PPKEAWAIFLPKGAAWMGLGENQSLSIEELIRGMAVCSGNDAALAAALLTEGSLEKFTLK 211

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY-KYFSIRKFRYR 220
           M+   K +G+++T ++++SGL +KNQ TTARD A+  +   K +P+   K+ S+ +  Y 
Sbjct: 212 MNEAVKTMGLKSTRFEDSSGLSEKNQ-TTARDFALFSLHYLKQYPENLKKFHSVNEISYP 270

Query: 221 NRIITNHNKLLNKMHNIDGIKTGYTRNS 248
            +    HN L+ K +       G++  +
Sbjct: 271 QK----HNILIKKNYRRF---KGFSNEA 291


>gi|152978447|ref|YP_001344076.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Actinobacillus
           succinogenes 130Z]
 gi|150840170|gb|ABR74141.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Actinobacillus
           succinogenes 130Z]
          Length = 296

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 58/270 (21%), Positives = 111/270 (41%), Gaps = 24/270 (8%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLY 87
           ++M K  F  ++++   +        S +V D   +++   +      P AS+TK+MT  
Sbjct: 3   KVMLKKAFSILLLLPSWAMAQ-----SYVVYDFTHDKVLESRSPYSVQPIASVTKLMTAN 57

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVS 144
           +  E  +++          S T    +    +   L + T     + + A++  S N  +
Sbjct: 58  VFLENNRNRNC------TASITDEDNDYIKGTHTRLPKYTPMPCNELLKAMLVHSDNYAA 111

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            A       S  +F   M+ KAK++GM++T + ++SGL   N +++  D   L      N
Sbjct: 112 HALARSAGMSRIRFIGKMNEKAKELGMKSTRFTDSSGLS-SNNVSSVMDLVKLAKYSL-N 169

Query: 205 FPQYYKYFSIRKFRY----RNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYK 259
            PQ                RN  + N NKL+  ++      KTGY R SG+N+V   +++
Sbjct: 170 KPQIQALSDTSAAYIRAGKRNVFVKNTNKLVREEIFGAALNKTGYIRESGYNLVFVNKFQ 229

Query: 260 DDP-IVAVV-MGMPTSQERDQKALELITSF 287
                + V+ +   +S  R       +  +
Sbjct: 230 CRKSTIGVISLNNTSSAFRSAFTKNKLEQY 259


>gi|218513748|ref|ZP_03510588.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli 8C-3]
          Length = 136

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 47/139 (33%), Positives = 82/139 (58%), Gaps = 4/139 (2%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYII 89
           M  +L +++   ++++ L A    +S+++D    ++   +  +   +PASLTKMMTLY+ 
Sbjct: 1   MAAVLTVTL---AVSAPLAALAGSASLILDARTGKVLAAENADTLNHPASLTKMMTLYLT 57

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
           FE L+  K+  +T I +SK AA + P+KL +K     T  + +  +I +SAND + A  E
Sbjct: 58  FEALKRGKIDWDTPIRMSKYAAARPPTKLGVKAGGTITVREAVYGMIVKSANDAAAAMAE 117

Query: 150 FISGSEKKFAILMSNKAKK 168
            + GSE  FA +M+ KA++
Sbjct: 118 TLGGSESGFARMMTAKARQ 136


>gi|301154684|emb|CBW14147.1| D-alanyl-D-alanine endopeptidase [Haemophilus parainfluenzae T3T1]
          Length = 291

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 112/258 (43%), Gaps = 21/258 (8%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYI 88
           ++ K+L +  ++ +MA+        S +V D   +++      +  +  AS+TK+MT  +
Sbjct: 1   MLKKVLSVLCLVPAMAT------AQSYVVYDFTHDRVLESSSPNHVQPIASVTKLMTANV 54

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
             E  ++        I        +  +   L + T  +  + + A++  S N  + A  
Sbjct: 55  FLENNRNTNCT--ASITDDDYDYIK-GTHTKLPKYTPISCNELLKAMLVHSDNYAAHALS 111

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
                S  +F   M+ KA+++GM++T + ++SGL D N I++  D   L      N  Q 
Sbjct: 112 RSAGMSRLQFIQKMNEKARELGMRSTRFSDSSGLSDSN-ISSVMDLVKLAKYSL-NKAQI 169

Query: 209 YKYFSIRK--FRYRNR--IITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYK--DD 261
               ++     +   R   + N NKL+  ++ +    KTGY R SG+N+V  +     + 
Sbjct: 170 KNLSNMPSAFIQAGGRSVFVKNTNKLVREEVFDAAINKTGYIRESGYNLVF-VNKNPCNR 228

Query: 262 PIVAVV-MGMPTSQERDQ 278
             + V+ +   +S  R  
Sbjct: 229 ATIGVISLNNHSSAFRTN 246


>gi|94991764|ref|YP_599863.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS2096]
 gi|94545272|gb|ABF35319.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS2096]
          Length = 231

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 21/173 (12%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT-- 109
             SSIV+D N + +      D PR PAS++KM TLYI+FE L   K+ ++T I  + T  
Sbjct: 43  PKSSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMDTTITATPTDQ 102

Query: 110 --AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK-KFAILMSNKA 166
             A     S   +     +     I      S+N  +     ++S ++   F   ++  A
Sbjct: 103 AIANIYEISNNNIVAGVAYPIRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRINATA 162

Query: 167 KKIGMQNTIYKNASGLHDK---------------NQITTARDQAILGILLRKN 204
           K++GM NT + NASG   +               + ITTARD + L     +N
Sbjct: 163 KQLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYTFLRN 215


>gi|148825354|ref|YP_001290107.1| hypothetical protein CGSHiEE_01190 [Haemophilus influenzae PittEE]
 gi|148715514|gb|ABQ97724.1| hypothetical protein CGSHiEE_01190 [Haemophilus influenzae PittEE]
          Length = 292

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 109/254 (42%), Gaps = 17/254 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S +V D   N++      +   P AS+TK+MT  +  E  ++       +I ++K   
Sbjct: 18  AQSYVVYDFTHNRVLESYAPDSIQPIASVTKLMTANVFLENNKNPNC----RIAITKEDT 73

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            +   +   L +    +  + + A++  S N  + A       S ++F   M+ KA ++G
Sbjct: 74  DRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAAHALSRAAGISRRQFINKMNEKAHQLG 133

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGIL-LRKNFPQYYKYFSIRKFRYRNRIIT--NH 227
           M +T + ++SGL   N I++  D   L    L K   +     S    +     +   N 
Sbjct: 134 MYSTRFHDSSGLSSYN-ISSPMDLVKLAKYSLNKADIKRLSNLSATYIQAGKYKLYIKNT 192

Query: 228 NKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY--KDDPIVAVVMGMPTSQERD----QKA 280
           NKL+  ++ +    KTGY + SG+N+V   ++  K+  I  + +   +S  R      K 
Sbjct: 193 NKLVRDEIFDAAVNKTGYIQESGYNLVFINKHLCKNATIGVISLNNTSSAYRSSFTKSKL 252

Query: 281 LELITSFLEKKTLK 294
            +   + L  +T++
Sbjct: 253 EKFGCTALNGRTIR 266


>gi|225026703|ref|ZP_03715895.1| hypothetical protein EUBHAL_00955 [Eubacterium hallii DSM 3353]
 gi|224955964|gb|EEG37173.1| hypothetical protein EUBHAL_00955 [Eubacterium hallii DSM 3353]
          Length = 209

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
              ++I+++     +   K  D+ + PAS+TK+MTL +IFE L  K++ LN  + VS+ A
Sbjct: 108 AAPNAILMEATTGTILYEKDADKEKPPASVTKVMTLLLIFEALSKKQITLNDTVTVSEHA 167

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
           A+   S+++L+     + +  I  +   SAND   A
Sbjct: 168 ASMGGSQVFLEPGETQSVDTMIKCIAVSSANDACVA 203


>gi|170782312|ref|YP_001710645.1| putative carboxypeptidase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156881|emb|CAQ02049.1| putative carboxypeptidase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 404

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 89/262 (33%), Gaps = 23/262 (8%)

Query: 39  IIMISMASELHAK--PKYSSIVIDVNKNQMTGFKQDEP--RYPASLTKMMTLYIIFEY-- 92
           ++ +       A       +I  D     +    +  P  R  AS+TK +T  ++ E   
Sbjct: 45  VVNVPTPESWPADGVSAVGAIGFDG----VLATNEAAPVSRPMASITKTVTALVVLEAKP 100

Query: 93  LQSKKLHLNTQIPVSKTAA-----TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           L   +            A       Q+         T  +    +   +  SAN+ + A 
Sbjct: 101 LAPGEDGPQVTFTAEDEALRGEILKQDGIVEPAVPGTSLSQRDLLEGALLASANNYAAAL 160

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
           G +  GS   F    +      G+  T   +A GL  +   TTA D   +G ++  + P 
Sbjct: 161 GVWAYGSNDAFVAAANAWLADQGLTGTHVADAMGLSPETVSTTA-DLVRIGEMVLAD-PV 218

Query: 208 YYKYFSIRKFRYRN-RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS--LRYKDD--P 262
                  R         + N N +L  +    GIKTG    +G  ++ +   +  D    
Sbjct: 219 LSGIVDQRSADVAGVGTVENRN-MLADVPGFRGIKTGTLEQAGKCLLWAVDTKVGDRDVT 277

Query: 263 IVAVVMGMPTSQERDQKALELI 284
           +V V +G     E  ++   L+
Sbjct: 278 LVGVTLGARDHAELARQVTALL 299


>gi|218660826|ref|ZP_03516756.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli IE4771]
          Length = 245

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 63/122 (51%)

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
           ++IG    ++ N++GL +     TAR+   L   L++++P  Y YF++  F +      N
Sbjct: 1   REIGHDKAVFGNSTGLPNGKSRVTAREMVTLAAALQQSYPNLYPYFALPDFEWNKIFQRN 60

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            N LL      DG+ TG+T   G++IV S++     +   + G+ + +ER ++A  ++  
Sbjct: 61  RNPLLGLDLGADGLATGFTEGEGYSIVASVQRDGRRLFLALAGIASDKERTEEAKRVLEW 120

Query: 287 FL 288
            L
Sbjct: 121 GL 122


>gi|148272890|ref|YP_001222451.1| D-alanyl-D-alanine carboxypeptidase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830820|emb|CAN01761.1| probable D-alanyl-D-alanine carboxypeptidase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 404

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 93/273 (34%), Gaps = 32/273 (11%)

Query: 37  LSIIMISMASELHAKP-----------KYSSIVIDVNKNQMTGFKQDEP--RYPASLTKM 83
            ++  +   S + A P              +I  D     +    +  P  R  AS+TK 
Sbjct: 34  AAVAQVDAPSPVVAVPTPESWPGDGVSAVGAIGFDG----VLATNEATPVSRPMASITKT 89

Query: 84  MTLYIIFEY--LQSKKLHLNTQIPVSKTAA-----TQNPSKLYLKEKTYFTTEQGILALI 136
           +T  ++ +   L   +            A       Q+         T  +    +   +
Sbjct: 90  VTALVVLKAKPLAPGEDGPQVTFTAEDEALRGEILKQDGIVEPAVAGTSLSQRDLLEGAL 149

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             SAN+ + A G +  GS   F    +    + G+  T   +A GL  +   TTA D   
Sbjct: 150 LASANNYAAALGVWAYGSNDAFVAAANAWLAEQGLTGTHVADAMGLSPETVSTTA-DLVR 208

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRN-RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTS 255
           +G ++  + P        R         + N N LL  +    GIKTG    +G  ++ +
Sbjct: 209 IGEMVLAD-PVLSGIVDQRSADVAGVGTVENRN-LLAGVPGFRGIKTGTLEQAGKCLLWA 266

Query: 256 --LRYKDD--PIVAVVMGMPTSQERDQKALELI 284
              +  D    +V V +G     E  ++   L+
Sbjct: 267 VDTKVGDRDVTLVGVTLGAKDHAELARQVTALL 299


>gi|256372037|ref|YP_003109861.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008621|gb|ACU54188.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 414

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 58/247 (23%), Positives = 104/247 (42%), Gaps = 17/247 (6%)

Query: 37  LSIIMISMASELHAK-PKYSSIVIDV-NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQ 94
           +S +    A  +  K    S+ VI       +     + P   ASL K+MT  I+     
Sbjct: 50  VSGVRAPTAPPITFKHGVQSATVIPALGSGSLEASPHERPVPIASLAKLMTALIVVRRHP 109

Query: 95  SK------KLHLN-TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
                    L +    + +S     ++ S + +         Q + AL+ RSAN+++T  
Sbjct: 110 LGSTASGPTLTMTPADVILSDVDVAEDQSTVPITAGERLNERQLLEALLVRSANNIATIL 169

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
             +++GSE  F   M+  A+ +G+  T + +ASG  +K  ++TARD AI+   +  N P 
Sbjct: 170 ATWVAGSESAFVATMNATARTMGLTGTHFADASGF-NKATVSTARDVAIVTARVEDN-PT 227

Query: 208 YYKYFSIRKFRYRN-RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR----YKDDP 262
                S           + N  + +    ++ G+K+G+T  SG     ++R      +  
Sbjct: 228 LAAIASEHAVTLPGAGTLPNIIQAIGT-GDVVGVKSGFTIWSGGCASIAVRTPTPVGELT 286

Query: 263 IVAVVMG 269
            V VV+G
Sbjct: 287 SVGVVIG 293


>gi|307260895|ref|ZP_07542581.1| hypothetical protein appser12_4660 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869462|gb|EFN01253.1| hypothetical protein appser12_4660 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 273

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 107/244 (43%), Gaps = 15/244 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S +V D   +++   +  +  +  AS+TK+MT  I  E  ++K    +    +S    
Sbjct: 18  AQSYVVYDFTHDRILESRAANNVQPIASVTKLMTANIFLENNKNKNCSAS----ISDQDF 73

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                +   L + T    ++ + A++  S N  + A       S  +F   M+ KA+++G
Sbjct: 74  DHIKGTGTKLPKHTPIACDELLKAMLVHSDNYAAHALSRSAGMSRAQFIQKMNQKAQQLG 133

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITN 226
           M++T + ++SGL   N I++A D   L      N  +  +  + +        RN  + N
Sbjct: 134 MRSTRFSDSSGLSSAN-ISSALDLVKLAKYSLNN-AKIQELSNTKAAYVRVGKRNVFMQN 191

Query: 227 HNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYK-DDPIVAVV-MGMPTSQERDQKALEL 283
            + L+  ++ +    KTGY R SG+N+V   +++ +   + V+ +   +S  R       
Sbjct: 192 TSALVREELFDAAINKTGYIRESGYNLVFVNKHQCNHATIGVISLNNRSSATRSTFTKNK 251

Query: 284 ITSF 287
           +  +
Sbjct: 252 LEQY 255


>gi|289803285|ref|ZP_06533914.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 133

 Score =  119 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 56/128 (43%), Gaps = 7/128 (5%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPAS 79
            ++I  ++  M     L+   +S A +  A    + +++D    Q+     + + R PAS
Sbjct: 6   RLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGIL 133
           LTK+MT Y++   + S ++  +  + V + A  +        S ++LKE    +      
Sbjct: 66  LTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSR 125

Query: 134 ALITRSAN 141
            LI  S N
Sbjct: 126 GLIVDSGN 133


>gi|289806354|ref|ZP_06536983.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 112

 Score =  119 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 1/111 (0%)

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT 189
           Q I  +  +S ND   A  +F +GS+  F  LM++    +G++NT ++   GL    Q +
Sbjct: 2   QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 61

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDG 239
           +ARD A++G  L ++ P  Y  +  ++F +      N N LL     N+DG
Sbjct: 62  SARDMALIGQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDG 112


>gi|307249643|ref|ZP_07531629.1| hypothetical protein appser4_4530 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858341|gb|EFM90411.1| hypothetical protein appser4_4530 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 273

 Score =  119 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 107/244 (43%), Gaps = 15/244 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S +V D   +++   +  +  +  AS+TK+MT  I  E  ++K    +    +S    
Sbjct: 18  AQSYVVYDFTHDRILESRAANNVQPIASVTKLMTANIFLENNKNKNCSAS----ISDQDF 73

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                +   L + T    ++ + A++  S N  + A       S  +F   M+ KA+++G
Sbjct: 74  DHIKGTGTKLPKHTPIACDELLKAMLVHSDNYAAHALSRSAGMSRAQFIQKMNQKAQQLG 133

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITN 226
           M++T + ++SGL   N I++A D   L      N  +  +  + +        RN  + N
Sbjct: 134 MRSTRFSDSSGLSSAN-ISSALDLVKLAKYSLNN-AKIQELSNTKAAYVRVGKRNVFMQN 191

Query: 227 HNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYK-DDPIVAVV-MGMPTSQERDQKALEL 283
            + L+  ++ +    KTGY R SG+N+V   +++ +   + V+ +   +S  R       
Sbjct: 192 TSALVREELFDAAINKTGYIRESGYNLVFVNKHQCNHATIGVISLNNRSSATRSTFTKNK 251

Query: 284 ITSF 287
           +  +
Sbjct: 252 LEQY 255


>gi|190149713|ref|YP_001968238.1| penicillin-binding protein 7 precursor [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303249783|ref|ZP_07335987.1| penicillin-binding protein 7 precursor [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303252663|ref|ZP_07338826.1| penicillin-binding protein 7 precursor [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307245252|ref|ZP_07527343.1| hypothetical protein appser1_4600 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307247423|ref|ZP_07529470.1| hypothetical protein appser2_4190 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307251972|ref|ZP_07533873.1| hypothetical protein appser6_4920 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307254199|ref|ZP_07536044.1| hypothetical protein appser9_4520 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307256466|ref|ZP_07538248.1| hypothetical protein appser10_4720 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307258664|ref|ZP_07540399.1| hypothetical protein appser11_4650 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307263022|ref|ZP_07544644.1| hypothetical protein appser13_4450 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189914844|gb|ACE61096.1| penicillin-binding protein 7 precursor [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302648631|gb|EFL78824.1| penicillin-binding protein 7 precursor [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302651350|gb|EFL81502.1| penicillin-binding protein 7 precursor [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306853896|gb|EFM86110.1| hypothetical protein appser1_4600 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306856120|gb|EFM88276.1| hypothetical protein appser2_4190 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306860664|gb|EFM92676.1| hypothetical protein appser6_4920 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306862899|gb|EFM94848.1| hypothetical protein appser9_4520 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865096|gb|EFM96997.1| hypothetical protein appser10_4720 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306867321|gb|EFM99174.1| hypothetical protein appser11_4650 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306871648|gb|EFN03370.1| hypothetical protein appser13_4450 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 273

 Score =  119 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 107/244 (43%), Gaps = 15/244 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S +V D   +++   +  +  +  AS+TK+MT  I  E  ++K    +    +S    
Sbjct: 18  AQSYVVYDFTHDRILESRAANNVQPIASVTKLMTANIFLENNKNKNCSAS----ISDQDF 73

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                +   L + T    ++ + A++  S N  + A       S  +F   M+ KA+++G
Sbjct: 74  DHIKGTGTKLPKHTPIACDELLKAMLVHSDNYAAHALSRSAGMSRAQFIQKMNQKAQQLG 133

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITN 226
           M++T + ++SGL   N I++A D   L      N  +  +  + +        RN  + N
Sbjct: 134 MRSTRFSDSSGLSSAN-ISSALDLVKLAKYSLNN-AKIQELSNTKAAYVRVGKRNVFMQN 191

Query: 227 HNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYK-DDPIVAVV-MGMPTSQERDQKALEL 283
            + L+  ++ +    KTGY R SG+N+V   +++ +   + V+ +   +S  R       
Sbjct: 192 TSALVREELFDAAINKTGYIRESGYNLVFVNKHQCNHATIGVISLNNRSSATRSTFTKNK 251

Query: 284 ITSF 287
           +  +
Sbjct: 252 LEQY 255


>gi|289450082|ref|YP_003474721.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184629|gb|ADC91054.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 748

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 91/239 (38%), Gaps = 23/239 (9%)

Query: 62  NKNQMTG---FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPS 116
           N  Q+      K+ E   PA++TK+ ++ + ++ L   +L+  T I  S     A     
Sbjct: 156 NNGQIQSVFTKKEHEKFAPATMTKLFSVLLAYDKLNQ-RLNEETDIIPSDVDGLAEVGAR 214

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
            +  K           L  +  S  D   A      G E  F   M+ KAK +GM ++ +
Sbjct: 215 IIGFKVGESLPIADLFLGAVMESGADAIRALARLSYGDENDFVKAMNEKAKALGMNDSHF 274

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQYYKY-----FSIRKFRYRNRIITNHNKLL 231
            N +GL      T+  D AI+  L     PQ  +      ++ +K  +    I  ++ L 
Sbjct: 275 SNCTGLSADGDSTSVHDMAIVMALCATR-PQLVQMLCTAGYTTQKTDFHPYGIALNSILF 333

Query: 232 NKMH-----------NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           N +             I G + G++ +  FN++T        +V V  G   +Q R   
Sbjct: 334 NDIEQAKAQSEGRKVYIQGGRPGWSPDGLFNLMTFAHVGKKLLVVVSAGADQAQARFAD 392


>gi|254362625|ref|ZP_04978714.1| S11 family D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica
           PHL213]
 gi|261492868|ref|ZP_05989414.1| S11 family D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496782|ref|ZP_05993157.1| S11 family D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|153094239|gb|EDN75110.1| S11 family D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica
           PHL213]
 gi|261307621|gb|EEY08949.1| S11 family D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311409|gb|EEY12566.1| S11 family D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 291

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 111/283 (39%), Gaps = 23/283 (8%)

Query: 24  IQRNIQLMGKILFLSIIMISMA-----SELHAKPKY------SSIVIDVNKNQMTGFKQ- 71
           +++ I +M   L LS      A       + A   Y      + +V D+N+ +    K  
Sbjct: 2   MKKFIPVMIAALVLSACSSQPAKRKSTPRIKATAAYIPTENSAYVVFDLNQKKFLEGKNF 61

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +  R  AS+TK+MT  +  E  +         +P    A     +   L +       + 
Sbjct: 62  NLVRPIASVTKLMTAVVFLEENRYGASCQTQILP--SDADFLKGTTSPLPKNLNIACSEL 119

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           + A++ RS N  + A       ++ +F   M++KA++IGM  T + ++SGL   + ++T 
Sbjct: 120 LKAMLVRSDNYAAHALAHATHLNKAQFLARMNSKAREIGMTQTYFGDSSGLS-SDNVSTV 178

Query: 192 RDQAILGILLRKNFPQYYKYFSIR--KFRYRNRI--ITNHNKLLN-KMHNIDGIKTGYTR 246
            D A L        P+  +  +          R   + N N ++  + +     KTGYTR
Sbjct: 179 VDLAKLAGYAASK-PEIQQLSNSPLVSVYAGGRYFSMKNTNSMVRSQSYQALVSKTGYTR 237

Query: 247 NSGFNIVTSLRYK--DDPIVAVVMGMPTSQERDQKALELITSF 287
            +G+N+    +       I  V +    +  R      ++  +
Sbjct: 238 EAGYNLAFIAKGDCRGKRIGVVSLNNDNAASRTDFTESMLAKY 280


>gi|294616051|ref|ZP_06695871.1| D, D-carboxypeptidase, putative [Enterococcus faecium E1636]
 gi|291591087|gb|EFF22776.1| D, D-carboxypeptidase, putative [Enterococcus faecium E1636]
          Length = 309

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 115/300 (38%), Gaps = 51/300 (17%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSI-------------------VIDVNKNQMT-GFK 70
           +  IL  + ++IS  +  +A+  Y  I                   +I+++   +    K
Sbjct: 15  LIVILMCTAVVISYVNRPYARAVYDRIKRILDKDFYDHLYLGSSFEIINLDTMDIHSYMK 74

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---NPSKLYLKEKTYFT 127
           +D+   PASL+K+ T+           L L+ QI +S TA      + S  +L+E    +
Sbjct: 75  KDQEELPASLSKLFTIDYAL-----SVLSLDEQITISPTALDMQKADSSTAHLQEGDILS 129

Query: 128 TEQGILALITRSANDVSTAFGEFISG-----------SEKKFAILMSNKAKKIGMQNTIY 176
               I A++  S ND + +   +  G             + F   +     + G ++T +
Sbjct: 130 VYDIICAMVLPSGNDAAYSLAIYTGGKLDPDAKNDEERYQSFMKNLDRYLSEQGYKHTHF 189

Query: 177 KNASGLHDKNQITTARDQAILGILLRKN--FPQYY--KYFSIRKFRYRNRIITNHNKLLN 232
            +A+G  D N  T+A D   +   L KN  F +    + +  +  +         N+ + 
Sbjct: 190 TDAAGY-DSNATTSAEDLTKVAAKLLKNDKFAEIVAKETYRAKSIKGNVYNWNTTNQFMQ 248

Query: 233 KM-----HNIDGIKTGYTRNSGFNI-VTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           +        + G+KTG + +  +N+ V      D+  + V  G  +   R      L+ +
Sbjct: 249 QDNRYFTEGVKGVKTG-SFDGRYNLCVYYTSSSDNHYLLVSFGSESDSRRYVDVQNLLHN 307


>gi|65319857|ref|ZP_00392816.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A2012]
          Length = 151

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 9/149 (6%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
           ++++   L+   +  ++I++          + AK   S+I+ID N  ++   K +E    
Sbjct: 3   FLKKITILLLSFVITALIVLYFYLYVNGPIIQAK---SAILIDANSGEVVYKKNEENSIQ 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            A+L+K+MT YI+ E L    + L+  + +S        S + +  K   T    + AL+
Sbjct: 60  SATLSKLMTEYIVLEQLDKGNIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHALL 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNK 165
               N  + A  E I+G+E  F  LM+ K
Sbjct: 120 LTGNNRSTLALAEHIAGNEDNFTQLMNQK 148


>gi|116490237|ref|YP_809781.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni PSU-1]
 gi|290889619|ref|ZP_06552709.1| hypothetical protein AWRIB429_0099 [Oenococcus oeni AWRIB429]
 gi|116090962|gb|ABJ56116.1| D-Ala-D-Ala carboxypeptidase A, Serine peptidase, MEROPS family S11
           [Oenococcus oeni PSU-1]
 gi|290480817|gb|EFD89451.1| hypothetical protein AWRIB429_0099 [Oenococcus oeni AWRIB429]
          Length = 440

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 103/257 (40%), Gaps = 34/257 (13%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----VS 107
             S++V++    Q+   K  ++    AS +K++T Y++ + +   KL  N +I     + 
Sbjct: 53  AASALVVNFKSGQVIAEKNPNKKLAIASTSKLLTAYLVLKAIHEGKLSWNKKIKANQEIY 112

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
           + +   +   + L +   +T  Q + + +  S N      G+ +SG++ KFA LM+  A 
Sbjct: 113 QLSKNPDLMNVTLYKNGSYTIRQLMNSTLLISTNATGILLGDAVSGNQTKFAELMNKTAA 172

Query: 168 KIGMQNT--IYKNASGLHD--------------KNQITTARDQAILGILLRKNFPQYYKY 211
             G+  +   + NA G+ +                 + +++  A +   L  ++P+  K 
Sbjct: 173 SFGIPKSEFKFYNAVGISNSYLGSGKLKGVSDQAENLASSKALATIAYRLFTDYPEVIKI 232

Query: 212 FSIRKFRYRN----------RIITNHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRY-- 258
               +  + +            +   N  ++KM       K G ++ +G  ++       
Sbjct: 233 IQQPELNFYDSNKKTSFKSATTLNTFNSEISKMKMKFIAAKNGASKKAGSVMLGLTDKLG 292

Query: 259 KDDPIVAVVMGMPTSQE 275
            +   +++VM   +  +
Sbjct: 293 NNQQYLSIVMNGSSYDD 309


>gi|126207904|ref|YP_001053129.1| penicillin-binding protein 7 precursor [Actinobacillus
           pleuropneumoniae L20]
 gi|126096696|gb|ABN73524.1| penicillin-binding protein 7 precursor [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 259

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 105/233 (45%), Gaps = 15/233 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S +V D   +++   +  +  +  AS+TK+MT  I  E  ++K    +    +S    
Sbjct: 18  AQSYVVYDFTHDRILESRAANNVQPIASVTKLMTANIFLENNKNKNCSAS----ISDQDF 73

Query: 112 TQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                +   L + T    ++ + A++  S N  + A       S  +F   M+ KA+++G
Sbjct: 74  DHIKGTGTKLPKHTPIACDELLKAMLVHSDNYAAHALSRSAGMSRAQFIQKMNQKAQQLG 133

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITN 226
           M++T + ++SGL   N I++A D   L      N  +  +  + +        RN  + N
Sbjct: 134 MRSTRFSDSSGLSSAN-ISSALDLVKLAKYSLNN-AKIQELSNTKAAYVRVGKRNVFMQN 191

Query: 227 HNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYK-DDPIVAVV-MGMPTSQER 276
            + L+  ++ +    KTGY R SG+N+V   +++ +   + V+ +   +S  R
Sbjct: 192 TSALVREELFDAAINKTGYIRESGYNLVFVNKHQCNHATIGVISLNNRSSATR 244


>gi|298230061|ref|ZP_06963742.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae str.
           Canada MDR_19F]
          Length = 283

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 79/211 (37%), Gaps = 26/211 (12%)

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAI 196
           ++GSEK F  +M  K  + G+Q+    N +GL+              D+    +A D AI
Sbjct: 1   MAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYDVAI 60

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDGIKTGYTRNSGFNI 252
           +   L K +PQ  +        +    IT+ N +L  M       DG+KTG T  +G + 
Sbjct: 61  VARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESF 120

Query: 253 VTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKKTLKHQQTHRKDNL 304
           V +   K   ++ VV+           R      L+      F  +K ++    ++    
Sbjct: 121 VGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQQGDAYQDSKA 180

Query: 305 SSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
                K+  +           +++  ++  +
Sbjct: 181 PVQDGKEDTVTAVAPEDIYLIERVGNQSSQS 211


>gi|325518516|gb|EGC98206.1| D-alanyl-D-alanine endopeptidase [Burkholderia sp. TJI49]
          Length = 206

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 72/175 (41%), Gaps = 9/175 (5%)

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             S+  L+  +  +        +  S N  + A      G    F   M+ +A+++GM++
Sbjct: 27  TGSR--LQVGSELSRRDMFHIALMSSENRAAAALSRDYPGGRTAFVKAMNREARRLGMRH 84

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR----IITNHNK 229
           T ++  +GL   + ++TA D A L     ++ P    + +      R      +  N + 
Sbjct: 85  THFREPTGLS-PHNVSTAEDLARLVGAAAQD-PLIRYFSTDTSTTVRPGDGELLYVNSDP 142

Query: 230 LLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
           L+  +   I   KTG+   SG  +V  +R K      V++G PT       A+++
Sbjct: 143 LVRYRRLPIRLQKTGFINESGHGVVMRMRVKGRRTTVVLLGAPTRAGVSSDAIKI 197


>gi|254445424|ref|ZP_05058900.1| FG-GAP repeat domain protein [Verrucomicrobiae bacterium DG1235]
 gi|198259732|gb|EDY84040.1| FG-GAP repeat domain protein [Verrucomicrobiae bacterium DG1235]
          Length = 1459

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 99/288 (34%), Gaps = 74/288 (25%)

Query: 67   TGFKQD--EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL------ 118
               K +  E R+ AS+TK MTL +  E L++ +  L   + VS+ A T   S+L      
Sbjct: 1058 LYGKDEHLEERHAASVTKCMTLLLAVEALENGQTELTRMVGVSELAGTNKGSRLLTYNDF 1117

Query: 119  -------------YLKEKTYFTTEQGILALITRSANDVSTAFGEFIS----GSEKKFAIL 161
                         +++          I A++  S N  S A  + I+    G   +F I+
Sbjct: 1118 GSEIKDDNGDPIYFIQPGDLMPLRLLIAAMMNESCNRSSIAIAQHIAEVVTGDPDRFIIM 1177

Query: 162  MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF---- 217
            M++KA ++ M +T++   +G      +T  +D   L +   K  PQ+ ++  I ++    
Sbjct: 1178 MNDKAAELEMHDTVFGQPAG----GMVTRPQDLITLLLEGSK-HPQFVEFGGIARYGEEA 1232

Query: 218  -------RYR------NRIITNHNKLLNKMHNIDGIKTG--------------------- 243
                    +       N   +  N  +         K G                     
Sbjct: 1233 PHDALCGTWNTGDPKCNGPFSKFNT-IGNYPGRQMWKGGNIGFWWSGDEAIDVPPRPPGI 1291

Query: 244  -YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
             Y+  S    V   +     I   ++    +  R + + +L      K
Sbjct: 1292 PYSTAS---AVGIAKRAGRDIAIAILQTNNAN-RTEDSQKLFDYGFRK 1335


>gi|145478575|ref|XP_001425310.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124392379|emb|CAK57912.1| unnamed protein product [Paramecium tetraurelia]
          Length = 262

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 87/243 (35%), Gaps = 47/243 (19%)

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           +  ++  +++    +I +   A   + +  +L      T +Q + AL+  S ND +    
Sbjct: 25  LLHHINPEQI----KIKIPGHAECIDGTSAFLNAGGILTIKQLLFALMLPSGNDAALVLS 80

Query: 149 E------------------FISGS---------------EKKFAILMSNKAKKIGMQNTI 175
                               + G+               +  F   M+  A  I M+NT 
Sbjct: 81  FTIAYLMILQKTEVYQYNRHLKGTIIDIEPQIERNKKLLKHTFLDQMNKHASSIKMENTN 140

Query: 176 YKNASGLHDKNQITTARDQAILGILLRK--NFPQY--YKYFSIRKFRYRN-----RIITN 226
           Y +  GL+D+  ++   D + L     +   F +    K F       +          N
Sbjct: 141 YSSVHGLNDEKNVSCPHDISKLIEKCIQLDVFLEIITTKIFKTHALTDKGGKSTLYKWKN 200

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            NKLL K     G+KTG T N+G       +  +   + VV+   +  +R + A  L+ S
Sbjct: 201 TNKLLKK-SGWMGVKTGVTPNAGPCFTGYYKNDNLEAIIVVLNCSSMNQRFRDAEVLLAS 259

Query: 287 FLE 289
            L+
Sbjct: 260 ALK 262


>gi|266625856|ref|ZP_06118791.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
 gi|288862244|gb|EFC94542.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
          Length = 239

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 14/153 (9%)

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           FA LM+ KAK++G   + + N SGL+D +  TTA D A++      N+P+  +    R +
Sbjct: 1   FAKLMNKKAKELGCTGSNFVNPSGLNDPDHYTTAYDMALIARSAL-NYPEIVEIMGTRVY 59

Query: 218 RYR-------NRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           +          + I+  +K+L K        + G KTG+T  +   +VT  +  D  +++
Sbjct: 60  KIPPSKKAPEGQTISPGHKMLKKNDSAYDPRVFGGKTGFTSLADNTLVTYAKKDDMTLIS 119

Query: 266 VVM-GMPTSQERDQKALELITSFLEKKTLKHQQ 297
           V++ G  T     +K L+   S  E K L   +
Sbjct: 120 VILNGHQTHYTDTKKLLDFGFSQFESKKLADYE 152


>gi|228965491|ref|ZP_04126577.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228794221|gb|EEM41739.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 166

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 71/149 (47%), Gaps = 9/149 (6%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
           ++++   L+      ++I++          + AK   S+I+I+ N  ++   K +E P  
Sbjct: 3   FLKKFAILLLSFFITALIVLYFYLYVNGPIIQAK---SAILINANSGEIVYKKNEETPVQ 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            A+L+K+MT YI+ E L  +K+ L+  + +S        S + +      T    + AL+
Sbjct: 60  SAALSKLMTEYIVLEQLNDRKIQLDDLVQISNEVFRVETSPIQVTSNDKTTVRDLLHALL 119

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNK 165
               N  + A  E I+G+E  F +LM+ K
Sbjct: 120 LAGNNRSALALAEHIAGNEDNFTVLMNKK 148


>gi|213025038|ref|ZP_03339485.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 160

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 9/147 (6%)

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
              +  G    F   M+ KAK +GM +T +   +GL   N ++TARD   L ++  K +P
Sbjct: 3   LAHYYPGGYNAFIKAMNAKAKALGMTHTRFVEPTGLSIHN-VSTARDLTKL-LIATKQYP 60

Query: 207 QYYKYFSIRK----FRYRNRIIT--NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYK 259
              +  + R+    F +    +   N N L+ +   NI   KTG+T  +G  +V      
Sbjct: 61  LIGQLSTTREDMATFSHPAYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVIN 120

Query: 260 DDPIVAVVMGMPTSQERDQKALELITS 286
           + P+  VVM           A  L T 
Sbjct: 121 NKPVALVVMDAFGKYTHFADASRLRTW 147


>gi|46143271|ref|ZP_00135568.2| COG1686: D-alanyl-D-alanine carboxypeptidase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 251

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 104/237 (43%), Gaps = 15/237 (6%)

Query: 60  DVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-NPSK 117
           D   +++   +  +  +  AS+TK+MT  I  E  ++K    +    +S         + 
Sbjct: 3   DFTHDRILESRAANNVQPIASVTKLMTANIFLENNKNKNCSAS----ISDQDFDHIKGTG 58

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
             L + T    ++ + A++  S N  + A       S  +F   M+ KA+++GM++T + 
Sbjct: 59  TKLPKHTPIACDELLKAMLVHSDNYAAHALSRSAGMSRAQFIQKMNQKAQQLGMRSTRFS 118

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----RNRIITNHNKLLN- 232
           ++SGL   N I++A D   L      N  +  +  + +        RN  + N + L+  
Sbjct: 119 DSSGLSSAN-ISSALDLVKLAKYSLNN-AKIQELSNTKAAYVRVGKRNVFMQNTSALVRE 176

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYK-DDPIVAVV-MGMPTSQERDQKALELITSF 287
           ++ +    KTGY R SG+N+V   +++ +   + V+ +   +S  R       +  +
Sbjct: 177 ELFDAAINKTGYIRESGYNLVFVNKHQCNHATIGVISLNNRSSATRSTFTKNKLEQY 233


>gi|94958259|gb|ABF47261.1| penicillin binding protein 4-like protein [Staphylococcus xylosus]
          Length = 326

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 93/242 (38%), Gaps = 26/242 (10%)

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           S   L     +T ++ +   ++ S+N  +   G+ +SG+   F   M+ KAK +GM+NT 
Sbjct: 8   SNTKLYPGETYTVKELLQITVSNSSNAAALILGKEVSGNLSDFTDKMNKKAKALGMENTH 67

Query: 176 YKNASGLHD--------------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           + N +G  +               +  +TA+D  IL   + ++ P+   +         +
Sbjct: 68  FVNPTGAENHQLRDFVPKKYKSENDNTSTAKDFGILSQRVVQDTPKILDFTKQLAPTQHS 127

Query: 222 RIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT----- 272
                 N  L      +   DG+KTG +  + +N   + +     I   +MG        
Sbjct: 128 VTYYTFNHSLEGADMSLEGTDGLKTGSSDVADYNHTITTKRDGFRINQAIMGAGNYDKLG 187

Query: 273 -SQERDQKALELITSFLEKKTLKH--QQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKID 329
             ++R+     L+    ++   +    +  +K N  +  ++K L     K    +  K+ 
Sbjct: 188 GEKQRNMMGNALMNMSFDQYKYEKILSKGEQKINGKTYFVEKDLYDVLPKDFDKKDYKVV 247

Query: 330 AK 331
            +
Sbjct: 248 IE 249


>gi|298247807|ref|ZP_06971612.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
           racemifer DSM 44963]
 gi|297550466|gb|EFH84332.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
           racemifer DSM 44963]
          Length = 389

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 91/253 (35%), Gaps = 20/253 (7%)

Query: 46  SELHAKP---KYSSIVIDVNKNQMTGFKQDEPRYPASL---TKMMTLYIIFEYLQSKKLH 99
           S + AKP     ++ ++D +   +        R   S+   TK M      E        
Sbjct: 142 STVVAKPVLHGSNAFLLDADMGTVLVDVNGHARV--SVAHFTKYMVAITALENADP---- 195

Query: 100 LNTQIPVSK---TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
            N  I + +    A  +  S   L           +  L+  S ND +      + G  +
Sbjct: 196 -NQMITIDQASLDAVPKGLSTAQLVAGDQIPLHDLLNGLLLPSGNDAAGVIARAVGGDPQ 254

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN---FPQYYKYFS 213
            F  +M+ +A+++ + +T + +   +   +  T+A D A +     +             
Sbjct: 255 NFVAMMNEEARQLQLNDTHFNSPYAISSADNYTSAADLASMMRYGMQLEVFSEDITGTIW 314

Query: 214 IRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
             +    N      N  L ++ N  G+++G+ +  G++ + + +     ++ V +  P+ 
Sbjct: 315 TLQASAYNHAYVWENVNLPQV-NEPGVESGHDKEIGYHAIFTPQSNGHLLIGVEINAPSP 373

Query: 274 QERDQKALELITS 286
           +  +     ++ S
Sbjct: 374 EALNADVSTILRS 386


>gi|228958790|ref|ZP_04120501.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800887|gb|EEM47793.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 166

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 4/137 (2%)

Query: 30  LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYI 88
            +  ++ L   +      + AK   S+I+I+ N  ++   K +E P   A+L+K+MT YI
Sbjct: 15  FITALIVLYFYLYVNGPIIQAK---SAILINANSGEIVYKKNEETPVQSAALSKLMTEYI 71

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           + E L  KK+ L+  + +S        S + +      T    + AL+    N  + A  
Sbjct: 72  VLEQLNDKKIQLDDFVQISNEVFRVETSPIQVTSNDKTTIRDLLHALLLAGNNRSALALA 131

Query: 149 EFISGSEKKFAILMSNK 165
           E I+G+E  F +LM+ K
Sbjct: 132 EHIAGNEDNFTVLMNKK 148


>gi|323225526|gb|EGA09756.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323251306|gb|EGA35178.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
          Length = 210

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 12/146 (8%)

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNI 252
            A++G  L ++ P  Y  +  ++F +      N N LL     N+DGIKTG+T  +G+N+
Sbjct: 1   MALIGQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNL 60

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITS---FLEK-KTLKHQQTHRKD------ 302
           V S       +++ VMG  T + R+ ++ +L+T    F E    LK  +    +      
Sbjct: 61  VASATEGQMRLISAVMGGRTYKGRETESKKLLTWGFRFFETVNPLKAGKEFASEPAWFGN 120

Query: 303 -NLSSTSLKKSLMIKKLKRTYSQFKK 327
            + +S  + K + +   +      K 
Sbjct: 121 TDRASLGVDKDVYLTIPRGRMKDLKA 146


>gi|311110173|ref|ZP_07711570.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus gasseri
           MV-22]
 gi|311065327|gb|EFQ45667.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus gasseri
           MV-22]
          Length = 201

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 5/122 (4%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP----VS 107
             S+I ID+   Q+   K  + + P AS++K++T+Y+  + + +KKL  N ++     + 
Sbjct: 61  AKSAIAIDLKSGQVLYAKNADKKLPVASMSKLITIYLTLDAINNKKLSWNQKVKPTKQIV 120

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
           K +     S + LK    +T +Q   A + +SAN  +   G+ ISGS++ F   M N+  
Sbjct: 121 KISNNPEYSGVPLKLNHAYTIKQLYEATLIQSANGPAMLLGQAISGSQQAFVKKMRNQLV 180

Query: 168 KI 169
             
Sbjct: 181 SW 182


>gi|52424904|ref|YP_088041.1| DacC protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306956|gb|AAU37456.1| DacC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 269

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 101/240 (42%), Gaps = 15/240 (6%)

Query: 57  IVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +V D   N++   +      P AS+TK+MT  +  E  ++      + I   +       
Sbjct: 1   MVYDFTHNKVLESRSPNSILPIASVTKLMTANVFLENNRNPNCS--SSIT-DEDYDHIKG 57

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           ++  L + T  +  + + A++  S N  + A       S  +F   M+ KA+++GM +T 
Sbjct: 58  TRTKLPKYTPISCNELLKAMLVHSDNYAAHALSRSAGMSRAQFIKKMNQKAQQLGMNSTR 117

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-----RNRIITNHNKL 230
           + ++SGL   N  +   D   L         Q  K  S  +  Y      N  + N NKL
Sbjct: 118 FSDSSGLSSSNVSSPM-DLVKLAKYSLDK--QLIKTLSNTRATYIRAGRHNVFMQNTNKL 174

Query: 231 LN-KMHNIDGIKTGYTRNSGFNIVTSLRYK-DDPIVAVV-MGMPTSQERDQKALELITSF 287
           +  +M +    KTGY R SG+N+V   +++ +   + V+ +   +S  R       +  +
Sbjct: 175 VREEMFDAAINKTGYIRESGYNLVFVNKHQCNRSTIGVISLNNASSAYRSNFTKHKLEEY 234


>gi|229030194|ref|ZP_04186253.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH1271]
 gi|228731112|gb|EEL82035.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH1271]
          Length = 274

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 73/183 (39%), Gaps = 25/183 (13%)

Query: 171 MQNTIYKNASGL--------------HDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
           M+N  + N++GL               D+    +ARD AIL   L ++FP+      I K
Sbjct: 1   MKNYKFVNSTGLTNYDLKGYHPEGTTPDEKNKMSARDCAILAQRLIQDFPKMLDTAKIPK 60

Query: 217 FRYR-----NRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
             ++        +TN N +L     +   +DG+KTG T  +G     ++      +++VV
Sbjct: 61  KTFQQGGKYPIDMTNFNWMLKGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVV 120

Query: 268 MGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
           +   +   R  +  +L         +K  + + KD++        +   K K    Q K+
Sbjct: 121 IKANSHAARFDETKKLYDYGFANFEVK--KAYGKDSVVKGYETVRVANAKDKDVVVQTKQ 178

Query: 328 IDA 330
             +
Sbjct: 179 AVS 181


>gi|229594902|ref|XP_001021203.2| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila]
 gi|225566509|gb|EAS00958.2| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila SB210]
          Length = 528

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 86/233 (36%), Gaps = 54/233 (23%)

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG------------------------- 148
           N +   L+E  ++T E  +  L+  S ND +                             
Sbjct: 296 NGTTAGLEENQWYTIEDLLYGLMLPSGNDAAICLAENFGCLLYFESIGQSKLFSEIQSVD 355

Query: 149 ----EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
               +++S  ++ F   M+  A +  ++ T + N  GL +K   +   D A L     K 
Sbjct: 356 VRDDQYVSDYQRYFLKEMNKIAMQFLLRCTQFSNPHGLANKLNKSNCNDLAKLTYKAMK- 414

Query: 205 FPQYYKYFSIRKF--------------RYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
           +  + K    + +               Y      N NKLL++     G+KTG T ++G 
Sbjct: 415 WRLFRKIVQTKTYLSKYKIINDQTQDVTYGTNFWKNTNKLLDQ--GYLGVKTGITTSAGS 472

Query: 251 NIVTSLR------YKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQ 297
            + +          K+  ++ +V+G   S +R      +I  ++  KTL+ QQ
Sbjct: 473 CLSSFYSNYVPSLQKNISVIVIVLGGYKSDDRFDDTQSIIDWYI--KTLEEQQ 523



 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ-IPVSKTAA 111
           + G    E R  AS+TK+MT  +  +  +   ++++     VSKTA 
Sbjct: 182 IQGENTYEIREMASITKIMTCLVSLKLAKKFDINVSEIYFSVSKTAV 228


>gi|289673758|ref|ZP_06494648.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. syringae
           FF5]
          Length = 151

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 12/132 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++VID+  +++      +   P AS+TK+MT  ++ +  Q     ++  IPV+    +Q
Sbjct: 27  SAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVVLDAKQP----MDEVIPVN---ISQ 79

Query: 114 NPSKLYL----KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
            P    +    K  +       +L  +  S N  + +      G    F + M+ KAK +
Sbjct: 80  TPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 139

Query: 170 GMQNTIYKNASG 181
           GM++T Y   +G
Sbjct: 140 GMKHTAYVEPTG 151


>gi|257487910|ref|ZP_05641951.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 191

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 9/160 (5%)

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +  S N  + +      G    F + M+ KAK +GM++T Y   +GL   N ++TARD 
Sbjct: 2   TLMSSENRAAASLAHSYPGGYPAFILAMNAKAKALGMKHTAYVEPTGLSVYN-VSTARDL 60

Query: 195 AILGILLRKNFPQYYKYFSI--RKFRYRNRIIT----NHNKLLNKM-HNIDGIKTGYTRN 247
             L +  RK +P   +  +   +   +R    T    N + L+ K   +I   KTG+T  
Sbjct: 61  TKLVMAARK-YPMLSELSTTEQKTVTFRKPTYTLGFSNTDHLVRKDNWDIKLTKTGFTNQ 119

Query: 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           +G  +V      + P+  V++           A  +    
Sbjct: 120 AGHCLVLLTSMANRPVSVVILDAFGKYTHFADASRIRKWM 159


>gi|256371452|ref|YP_003109276.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008036|gb|ACU53603.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 416

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 92/218 (42%), Gaps = 19/218 (8%)

Query: 64  NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ---IPVSK-------TAATQ 113
            ++  +    P+  AS+ KMMT  +    ++   L L  Q   I ++        T   Q
Sbjct: 85  GRIGTYGPTTPQTIASVAKMMTALLT---IRDHPLSLGQQGPSITITPEDYQIYLTDKAQ 141

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           N S + +      +  Q + AL+  SA++++T    + +GSE  F   M+++AK +G+ +
Sbjct: 142 NDSVMAVAPGEQLSEYQALEALLIPSADNMATVLATWDAGSESAFVAQMNHEAKVLGLTD 201

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-NRIITNHNKLLN 232
           T Y + SGL      + A  Q  +  L+  N P      S  +       ++ N N  + 
Sbjct: 202 THYGDPSGLSAA-TYSNASSQLRVARLVMAN-PVLASIVSKPQATLPVAGVVYNVNGEVT 259

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI--VAVVM 268
             H I G+KTG      F +  ++         + VV+
Sbjct: 260 H-HGIIGVKTGSILTGNFAMACAVHVGTSTYTGLGVVL 296


>gi|289807457|ref|ZP_06538086.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 92

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 47/91 (51%)

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           ND   A  ++I+G + +F  +M++  KK+ +Q+T ++   GL    Q ++A D A+L   
Sbjct: 2   NDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRA 61

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +    P++Y  +S +   +      N N L+
Sbjct: 62  IIHGEPEFYHMYSEKSLTWNGITQQNRNGLV 92


>gi|227501199|ref|ZP_03931248.1| D-alanyl-D-alanine carboxypeptidase [Anaerococcus tetradius ATCC
           35098]
 gi|227216600|gb|EEI82004.1| D-alanyl-D-alanine carboxypeptidase [Anaerococcus tetradius ATCC
           35098]
          Length = 313

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 97/263 (36%), Gaps = 45/263 (17%)

Query: 58  VIDVNKNQMTGFKQDEPRY-PASLTKM------MTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           V D+N+ +   ++  +     ASL+K+      MT           K+ L+ ++ +S   
Sbjct: 65  VYDLNEGKYLFYEGGKQLPSVASLSKLFAIDYAMT-----------KVKLDDKVEISDEL 113

Query: 111 AT---QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-----------K 156
            +   +  S   L+   Y T +Q I A++  S ND + A    I   E           +
Sbjct: 114 LSLVPEGSSLANLRSGEY-TAKQIIQAMLVPSGNDAAYALAYNIGKKELGDGYSTKEYVE 172

Query: 157 KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            F   + +  KK G  NT   + SG   +   T   D   + + L  ++    +      
Sbjct: 173 YFVKKLEDYLKKEGYTNTDLFDPSGFSTQA-YTDLDDINRVALKLL-DYDFVRECVGESS 230

Query: 217 FRY----RNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           F       +    N N+ L+K        I G+KTG T    +N++          +   
Sbjct: 231 FTIHTNQGDFTWKNTNEFLDKGSLYYNKYIKGLKTG-TMAESYNLLALYEKDGKGYLITC 289

Query: 268 MGMPTSQERDQKALELITSFLEK 290
           +   + ++R Q     I + +EK
Sbjct: 290 LAAKSDKDRYQAVQAAINTIIEK 312


>gi|237800749|ref|ZP_04589210.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023607|gb|EGI03664.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 185

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 9/154 (5%)

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI 199
            N  + +      G    F + M+ KA+ +GM++T Y   +GL   N ++TARD   L +
Sbjct: 1   ENRAAASLAHSYPGGYPAFILAMNAKARALGMKHTAYVEPTGLSVFN-VSTARDLTKLVM 59

Query: 200 LLRKNFPQYYKYFSI--RKFRYRNRIIT----NHNKLLNKM-HNIDGIKTGYTRNSGFNI 252
             RK +P   +  +   +   +R    T    N + L+ K   +I   KTG+T  +G  +
Sbjct: 60  AARK-YPMISELSTTEQKTVTFRKPTYTLGFSNTDHLVRKDNWDIKLTKTGFTNQAGHCL 118

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
           V      + P+  V++           A  +   
Sbjct: 119 VLLTSMANRPVSVVILDAFGKYTHFADASRIRKW 152


>gi|33150032|gb|AAP97032.1| putative D-alanyl-D-alanine carboxypeptidase [Lactobacillus reuteri
           DSM 20016]
          Length = 162

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 75/158 (47%), Gaps = 8/158 (5%)

Query: 29  QLMGKILFLSIIMISMASELHAK---PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
           +L   IL L ++++  +  + A       ++I+ D +  Q+   +  D+    AS+TK++
Sbjct: 3   KLTVFILSLFMMLMVGSQSVLANNRIDASAAIMADASTGQIIYKQNVDKALPVASITKLL 62

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGILALITRSA 140
           T+ +I + +Q K+L  +TQ+ ++   A        S + LK    ++    I A + +SA
Sbjct: 63  TILVIEDEIQQKQLSWDTQVKITPEIAAISNDAAYSSIGLKSGQSYSVRTLINAALVKSA 122

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
           +  + A          +F + M  KAKKIGM  T   N
Sbjct: 123 DGATVALATATGDGTDEFNLKMMQKAKKIGMTKTNIVN 160


>gi|297197634|ref|ZP_06915031.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sviceus ATCC
           29083]
 gi|297146814|gb|EFH28363.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sviceus ATCC
           29083]
          Length = 223

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 55/153 (35%), Gaps = 6/153 (3%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
             +      S +V D +  ++        R  PAS  K +    +   L      L   +
Sbjct: 67  PRVPDVSALSWVVADADSGEVLAAHDAHRRLPPASTLKTLFALTVLPVLPGG---LRHTV 123

Query: 105 PVSKTAATQNPSK-LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
             ++ A  +  S  + + E   +        +   S ND        +SG     A  M 
Sbjct: 124 GANELADIEPGSSLVGVAEGQTYQVADLWRGVFLNSGNDAVHVLA-GLSGGWSTTAARMQ 182

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
            KA+ +G ++T  ++  G     Q+++A D A+
Sbjct: 183 AKARALGARDTYVRSPDGYDTPGQVSSAYDLAV 215


>gi|325672916|ref|ZP_08152610.1| D-alanyl-D-alanine endopeptidase [Rhodococcus equi ATCC 33707]
 gi|325556169|gb|EGD25837.1| D-alanyl-D-alanine endopeptidase [Rhodococcus equi ATCC 33707]
          Length = 299

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 112/290 (38%), Gaps = 26/290 (8%)

Query: 21  SIYIQRNIQLMGKILFLSIIMI---SMASELHAKPKYSSI-------VIDVNKNQMTGFK 70
           ++ I   I L+G  L+   +M    S      A+P  S+        V ++   ++ G +
Sbjct: 9   ALPIAVVILLVGAALWFVDVMSRPGSGGPVGLARPGASTAYTFVDDAVAEM---RVGGAR 65

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-------QNPSKLYLKEK 123
           Q  PR  AS  K++T   + E            + +++  A        +  S + +   
Sbjct: 66  QSRPRPTASTAKVITALAVLERKPLAPGEDGPTLTMTEADADLYRDYADRGGSAVAVGAG 125

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
              +  + ++ ++  SAN+++     +  GS  ++    +   + +GM +T     +   
Sbjct: 126 QQLSEYEMLVGMLLPSANNLADTLAVWAFGSLAEYRSAATQLVRSLGMTSTTVGTDASGF 185

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-RIITNHNKLLNKMHNIDGIKT 242
             +  +T +D  +L     +N P   +  +          ++ N N LL +   + G+KT
Sbjct: 186 SSSTTSTVQDLTLLAAAAVRN-PVIAEIVARDHATLSGVGVVFNTNSLLGR-PGVVGLKT 243

Query: 243 GYTRNSGFNIVTSLRYK--DDPIVAVVMG-MPTSQERDQKALELITSFLE 289
           G T  +G   + + R       +V  V G   ++ +   +A  L+    E
Sbjct: 244 GTTDEAGGVFLFAARVGAAGRLVVGAVQGEGRSAHDAVTRAARLLDEIEE 293


>gi|289767530|ref|ZP_06526908.1| LOW QUALITY PROTEIN: D-alanyl-D-alanine carboxypeptidase
           [Streptomyces lividans TK24]
 gi|289697729|gb|EFD65158.1| LOW QUALITY PROTEIN: D-alanyl-D-alanine carboxypeptidase
           [Streptomyces lividans TK24]
          Length = 378

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 51/157 (32%), Gaps = 4/157 (2%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLN 101
             A  +      S +V D     +           PAS  K +    +   L     H  
Sbjct: 49  PAAPRVPEVSALSWVVADAGTGDVLAANDAHRELPPASTLKTLFALTVLPALPGGIRH-- 106

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
              P   +      S + + E   +        +   S ND        ++G     A  
Sbjct: 107 EVGPEDLSGIGPGSSLVGVVEGQTYRVSDLWNGVFLNSGNDAVHVLAS-LTGGWSATAAR 165

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           M  +A+ +G ++T  ++  G     Q+++A D A+ G
Sbjct: 166 MQAEARALGARDTHVRSPDGYDAPGQVSSAYDLAVFG 202


>gi|256783646|ref|ZP_05522077.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
          Length = 444

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 51/157 (32%), Gaps = 4/157 (2%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLN 101
             A  +      S +V D     +           PAS  K +    +   L     H  
Sbjct: 39  PAAPRVPEVSALSWVVADAGTGDVLAANDAHRELPPASTLKTLFALTVLPALPGGIRH-- 96

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
              P   +      S + + E   +        +   S ND        ++G     A  
Sbjct: 97  EVGPEDLSGIGPGSSLVGVVEGQTYRVSDLWNGVFLNSGNDAVHVLAS-LTGGWSATAAR 155

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198
           M  +A+ +G ++T  ++  G     Q+++A D A+ G
Sbjct: 156 MQAEARALGARDTHVRSPDGYDAPGQVSSAYDLAVFG 192


>gi|312141822|ref|YP_004009158.1| d-alanyl-d-alanine carboxypeptidase [Rhodococcus equi 103S]
 gi|311891161|emb|CBH50480.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus equi
           103S]
          Length = 302

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 107/292 (36%), Gaps = 28/292 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKN---------------QMTG 68
           ++R I L   ++ L +       ++ ++P     V                     ++ G
Sbjct: 7   LRRGIALPIAVVILLVGAALWFVDVMSRPGSGGPVGLARSGASTAYTFVDDAVAEMRVGG 66

Query: 69  FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-------QNPSKLYLK 121
            +Q  PR  AS  K++T   + E            + +++  A        +  S + + 
Sbjct: 67  ARQSRPRPTASTAKVITALAVLERKPLAPGEDGPTLTMTEADADLYRDYADRGGSAVAVG 126

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
                +  + ++ ++  SAN+++     +  GS  ++    +   + +GM +T     + 
Sbjct: 127 AGQQLSEYEMLVGMLLPSANNLADTLAVWAFGSLAEYRTAATQLVRSLGMTSTTVGTDAS 186

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-RIITNHNKLLNKMHNIDGI 240
               +  +T +D  +L     +N P   +  +          ++ N N LL +   + G+
Sbjct: 187 GFSSSTTSTVQDLTLLAAAAVRN-PVIAEIVARDHATLSGVGVVFNTNSLLGR-PGVVGL 244

Query: 241 KTGYTRNSGFNIVTSLRYK--DDPIVAVVMG-MPTSQERDQKALELITSFLE 289
           KTG T  +G   + + R       +V  V G   ++ +   +A  L+    E
Sbjct: 245 KTGTTDEAGGVFLFAARVGAAGRLVVGAVQGEGRSAHDAVTRASRLLDEIEE 296


>gi|227541842|ref|ZP_03971891.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227182285|gb|EEI63257.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 222

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 7/119 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
            +S +V D++   +   K    RY PAS+ K++   +  +     +L L   + V+  ++
Sbjct: 20  AHSFLVFDLDTGDIYAAKDPHGRYRPASIIKVLLASVAID-----RLSLTDSMEVTAESS 74

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            Q  S   +     +T +  +  L+  S ND + A  + + G E+    +++ +A  +G
Sbjct: 75  DQEGSSAGIGPGGRYTVDDLLHGLLMASGNDTAHAIAQLLGGDEEA-LRMVNARALDLG 132


>gi|289805534|ref|ZP_06536163.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 140

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 54/139 (38%), Gaps = 18/139 (12%)

Query: 19  YGSIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNKNQMT 67
             + +  R +Q M     L    IS A             +      S I+ID N  ++ 
Sbjct: 1   MKTTFSARFMQRMALTTALCATFISTAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVL 60

Query: 68  GFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYL 120
             +  DE R PASLTKMMT Y+I + +++ K      + V   A        +  S ++L
Sbjct: 61  AEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDAWATGNPVFKGSSLMFL 120

Query: 121 KEKTYFTTEQGILALITRS 139
           K        Q I  +  +S
Sbjct: 121 KPGMQVPVSQLIRGINLQS 139


>gi|257438479|ref|ZP_05614234.1| penicillin-binding protein 5 domain protein [Faecalibacterium
           prausnitzii A2-165]
 gi|257199058|gb|EEU97342.1| penicillin-binding protein 5 domain protein [Faecalibacterium
           prausnitzii A2-165]
          Length = 446

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/311 (18%), Positives = 121/311 (38%), Gaps = 46/311 (14%)

Query: 24  IQRNIQLMG--KILFLSIIMISMA----SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP 77
           ++R   L+    +LF  + + + A    S ++     S+ +++ + N +   K  E +  
Sbjct: 1   MKRIFALLLSLAVLFSCLAVTAGAMFDPSTVYDVKAQSAYIVNTDTNIIVYEKDSEKQVS 60

Query: 78  AS-LTKMMTLYIIFEYLQSKKLHLNTQIP----VSKTAATQNPSKLYLKEKTYFTTEQGI 132
           A  LTK MT+ ++          L++       +S      N     ++    FT  + +
Sbjct: 61  AGGLTKYMTIALVLTNYAD---QLDSTFTMPFAISDYV--HNSDNADMRSGETFTYREAL 115

Query: 133 LALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
            A++TR+AN+ +      +SG +   +   M+  +++IG  N+ + +A GL D    TTA
Sbjct: 116 YAMVTRNANEAAMGLAHELSGGDLAGWVSQMNTLSQRIGTTNSTWTDACGL-DSGNTTTA 174

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFR-------YRNRIITNHNKLLNK----------M 234
            D  ++   L  +F  + +  +   F         ++ ++ + N  LNK          M
Sbjct: 175 VDMYLILRYLM-SFDAFKEISAAPTFTMPAKEKHAKSFVLLSQNVALNKTSGGRFYRSAM 233

Query: 235 HNIDGIKTGYTRNSG-FNIVTSLRYKDDPIVAVVMGMPT-------SQERDQ--KALELI 284
                    Y  +SG  + V+         +  +M  P        S  R    +  +LI
Sbjct: 234 QGGMCDVMAYKNDSGDQSYVSWANKDGATYIFCIMQSPDTCDDYGYSNRRPALYETTKLI 293

Query: 285 TSFLEKKTLKH 295
               E  +++ 
Sbjct: 294 DWVFESFSIQA 304


>gi|118369246|ref|XP_001017828.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila]
 gi|89299595|gb|EAR97583.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila SB210]
          Length = 978

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 68/177 (38%), Gaps = 31/177 (17%)

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F  +M+ +A+K+ M+NT Y N  GL DK   ++A D   L      +F  + +      +
Sbjct: 317 FVKIMNQEAQKLQMRNTQYSNPHGLSDKGNKSSAIDYGRLCYAAMSSFALFRQVVKTPLY 376

Query: 218 -------------------------------RYRNRIITNHNKLLNKMHNIDGIKTGYTR 246
                                            RN    N NKLL +  +  GIKTG T 
Sbjct: 377 SCKILLNKDLIQNKKNSLQTPTNQNKTLSVQTMRNAQWENTNKLLLRNSHFIGIKTGNTP 436

Query: 247 NSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDN 303
           N+G  + T  +     I  +V+    S++R   + +L     ++      QT + +N
Sbjct: 437 NAGPCLATHYQKNGIDIQVIVLKCKDSEKRWVDSQKLAEWAYQQILQDCTQTLQTEN 493



 Score = 66.4 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 9/111 (8%)

Query: 64  NQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ-IPVSKTAATQNPSKLYLK 121
           N++   K   E    ASLTK+MT +   +     +L   +  + V K AA    +   L+
Sbjct: 84  NRLIYNKNGSEALEIASLTKVMTFFTSLKLSAKHELDPQSVYVRVPKAAAFICGTSACLR 143

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFI-------SGSEKKFAILMSNK 165
              Y        AL+  S ND +     F        + S   F    + +
Sbjct: 144 NGEYIKLCDLFYALMLPSGNDAACTLANFFGQLERRRANSSSAFLDQQAAQ 194


>gi|289549537|ref|YP_003470441.1| penicillin binding protein 4 [Staphylococcus lugdunensis HKU09-01]
 gi|289179069|gb|ADC86314.1| penicillin binding protein 4 [Staphylococcus lugdunensis HKU09-01]
          Length = 269

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 86/200 (43%), Gaps = 21/200 (10%)

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD------------KNQ--ITTAR 192
             E I G+   F   M+ KA+ + M++T + N SG  +            +     TTA+
Sbjct: 1   MAEHIDGNSSDFTHRMNRKAQALHMRHTHFNNPSGADNRLIKPFAPSKYKQQHFSKTTAK 60

Query: 193 DQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL----NKMHNIDGIKTGYTRNS 248
           D A+L   L K  P+  K   +   +    ++ N N  L    + +   DG+KTG T N 
Sbjct: 61  DMAVLTQQLVKQHPKVLKITRLTSDKQHGHMLKNTNLSLPAQADGLAGADGLKTG-TSNH 119

Query: 249 GFNIVTSLRYKDDPIVAVVMGM-PTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSST 307
           G+N+  + +  +  I +V+  + P + ER +   + +++ + ++  K+    +  +    
Sbjct: 120 GYNLALTAKQNNLRIHSVLFQVQPFADERAKHVRQQLSNIMVRRAFKNYDYRKVLSKGQH 179

Query: 308 SLKKSLMIKKLKRTYSQFKK 327
            ++  +   K K  Y    K
Sbjct: 180 RIQGKMYYVK-KDLYDVVPK 198


>gi|255522654|ref|ZP_05389891.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria
           monocytogenes FSL J1-175]
          Length = 168

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 4/136 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++ V  V   +    +  +   P ASLTK+MT +++ E + + +L  + ++ + +   
Sbjct: 31  ANAAAVYSVENGEPLYEENADKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLDLVRLDD 90

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S   + +K  ++      A++T SAND +   G+ + G    F   M+N+AKK+GM
Sbjct: 91  PSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLGDRLDG--ANFPKEMNNQAKKLGM 148

Query: 172 QN-TIYKNASGLHDKN 186
            + T + +ASGL    
Sbjct: 149 SSKTTFVSASGLDVDG 164


>gi|266623227|ref|ZP_06116162.1| penicillin-binding protein 5 [Clostridium hathewayi DSM 13479]
 gi|288864998|gb|EFC97296.1| penicillin-binding protein 5 [Clostridium hathewayi DSM 13479]
          Length = 277

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 66/171 (38%), Gaps = 22/171 (12%)

Query: 163 SNKAKKIGMQNTIYKNASGLHD--------KNQITTARDQAILGILLRKNFP---QYYKY 211
           + KA+ +G  +T +   +GL          K   TTA D A +        P   ++ K 
Sbjct: 1   NQKARDLGCSDTYFITPNGLDASREENGQMKEHSTTAADLARIMNYCIGTSPKKEEFLKI 60

Query: 212 FSIRKFRY------RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              + + +      R+    NHN LL  M      KTG+T  +G++ V +L         
Sbjct: 61  TGTQSYYFTDQEGKRSYNCQNHNALLTMMSGAFSGKTGFTGGAGYSYVGALEDGGREFTI 120

Query: 266 VVMGM---PTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSL 313
            ++G    P    +   A +L    +E    ++++ +++       ++  +
Sbjct: 121 ALLGCGWPPHKTYKWSDARKLFGYGMEHY--QYREVYQEKTFPEIPVENGV 169


>gi|22090613|dbj|BAC06851.1| D-Ala-D-Ala carboxypeptidase homologue [Bacillus circulans]
          Length = 272

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 73/198 (36%), Gaps = 32/198 (16%)

Query: 168 KIGMQN-TIYKNASGLHDKN------------QITTARDQAILGILLRKNFPQYYKYFSI 214
           ++GM +   + NA+GL   +             + +A+D AIL   L     +  +Y  +
Sbjct: 1   ELGMSDKAQFINATGLSRADIKENAPKSIQGETVMSAKDVAILARHLVTEHKEVLEYTKV 60

Query: 215 RKFRYR---NRIITNHNKLLNK-----------MHNIDGIKTGYTRNSGFNIVTSLRYKD 260
              + R      + N+N +L                +DG+KTG+T  + +    +     
Sbjct: 61  PSKKLRESDKTPMINYNWMLEGNSSNVNFKKYAYQGLDGLKTGHTDEALYCFTGTAERNG 120

Query: 261 DPIVAVVMGMPTSQERDQKALELITSF---LEKKTLKHQQTHRKDNLSSTSLKKSLMIKK 317
             +++VVMG  T  ER  +  +++       E KTL    T   D   +  + K + + +
Sbjct: 121 MRLISVVMGAKTEPERFNQTRKVLDYGFTNFEFKTLAKAGT-ALDAQKTVPITKGVEL-E 178

Query: 318 LKRTYSQFKKIDAKAHST 335
                        K  + 
Sbjct: 179 APAVLKNDVAFAVKKGTA 196


>gi|213025793|ref|ZP_03340240.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 129

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 10/106 (9%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
           MI    ++ A+   S I+ID N  ++   +  DE R PASLTKMMT Y+I + +++ K  
Sbjct: 26  MIPGVPQIDAE---SYILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFK 82

Query: 100 LNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRS 139
               + V   A        +  S ++LK        Q I  +  +S
Sbjct: 83  ETDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQS 128


>gi|229015415|ref|ZP_04172419.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH1273]
 gi|228745873|gb|EEL95871.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus AH1273]
          Length = 244

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 63/161 (39%), Gaps = 23/161 (14%)

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI-----ITNHNKLLNK----MHNIDG 239
            +ARD AIL   L ++FP+      I K  +R        + N N +L         +DG
Sbjct: 1   MSARDVAILAQRLIQDFPKTLDIAKISKKVFREGTPDRIEMPNWNWMLKGLIKEYEGVDG 60

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK--------- 290
           +KTG T  +G     ++       ++VV+   +   R  +  +L                
Sbjct: 61  LKTGSTPEAGDCFTGTIERNGMRFISVVIKTNSHTARFDETKKLYDYGFANFEMKKMYEK 120

Query: 291 -KTLKHQQTHRKDNLSSTSL----KKSLMIKKLKRTYSQFK 326
             ++K ++T R +N     +    K+++ +   K +   +K
Sbjct: 121 GSSVKGKETVRVENAKDKDVAVQTKQAVSLPVPKGSKDVYK 161


>gi|264676436|ref|YP_003276342.1| peptidase S11, D-alanyl-D-alanine [Comamonas testosteroni CNB-2]
 gi|262206948|gb|ACY31046.1| peptidase S11, D-alanyl-D-alanine [Comamonas testosteroni CNB-2]
          Length = 205

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 49/95 (51%), Gaps = 8/95 (8%)

Query: 202 RKNFPQYYKYFSIRKFRYRNRIITN---HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY 258
             +FP+Y  Y++ +++ Y     +N    N LL +   +DG+KTG+T  +G+ +V + + 
Sbjct: 1   MHDFPEYMHYYATKQYSYPGTPASNGSNRNALLFRDPTVDGLKTGHTNAAGYCLVATAKR 60

Query: 259 -----KDDPIVAVVMGMPTSQERDQKALELITSFL 288
                    ++++V+G  + + R  ++ +L+    
Sbjct: 61  DLPNVGQRRLLSIVLGTASEKARANESQKLLNWGY 95


>gi|91228812|ref|ZP_01262719.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 12G01]
 gi|91187617|gb|EAS73942.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 12G01]
          Length = 125

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 7/103 (6%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
             S I++  A ++ AK     +++D +  ++   K+ +    PASLTKMMT Y+I + L 
Sbjct: 26  LASPIVVPDAPQIAAK---GYVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELA 82

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGILA 134
              +  +  + +SK A  +N    SK++++  T          
Sbjct: 83  RGNISEDDDVTISKNAWAKNFPDSSKMFIEVGTTVKVRDLNRG 125


>gi|218458344|ref|ZP_03498435.1| putative penicillin-binding protein precursor [Rhizobium etli Kim
           5]
          Length = 122

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMM 84
           R    M  + F      +  + +        I++DV   ++   ++     YPASLTK+M
Sbjct: 7   RLFAAMRPLGFTVAATAAFLASISLAQANPHILVDVQTGRVLEHEEAFRKWYPASLTKLM 66

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           T+Y +F+ +++ ++ L+T I +SK AA Q  +K+Y K     T +  +  L+ +S
Sbjct: 67  TVYTVFDAIRAGQISLDTPIVMSKRAAAQPAAKMYFKPGQKLTLDSALKILLVKS 121


>gi|301301086|ref|ZP_07207246.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851356|gb|EFK79080.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 129

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 6/129 (4%)

Query: 44  MASELHA-KPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           MA  + A     S+I +D N  Q+    K+DE    AS++K++T YI+ + +   +L  N
Sbjct: 1   MADSVPALTDVKSAIAVDANSGQILYETKEDEVYPVASMSKLLTAYILLDKINHHELSWN 60

Query: 102 TQIPVSKTAA----TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           T++  +K  A        + + L     +T ++   A++  SAN  +      +SGS+  
Sbjct: 61  TKVKPTKVEAEISHNSELTNVPLDSTHSYTIKELYQAMLVGSANAAAMVIARAVSGSQTD 120

Query: 158 FAILMSNKA 166
           F  LM   A
Sbjct: 121 FVKLMRVTA 129


>gi|213160841|ref|ZP_03346551.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
          Length = 199

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 12/134 (8%)

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           P  Y  +  ++F +      N N LL     N+DGIKTG+T  +G+N+V S       ++
Sbjct: 2   PNEYAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLVASATEGQMRLI 61

Query: 265 AVVMGMPTSQERDQKALELITS---FLEK-KTLKHQQTHRKD-------NLSSTSLKKSL 313
           + VMG  T + R+ ++ +L+T    F E    LK  +    +       + +S  + K +
Sbjct: 62  SAVMGGRTYKGRETESKKLLTWGFRFFETVNPLKAGKEFASEPAWFGNTDRASLGVDKDV 121

Query: 314 MIKKLKRTYSQFKK 327
            +   +      K 
Sbjct: 122 YLTIPRGRMKDLKA 135


>gi|255017532|ref|ZP_05289658.1| hypothetical protein LmonF_06693 [Listeria monocytogenes FSL
           F2-515]
          Length = 166

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 4/136 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             ++ V  V   +    +  +   P ASL+K+MT +++ E + + +L  + ++ + +   
Sbjct: 31  ANAAAVYSVENGEALYEQNADKVMPIASLSKLMTAFLVLEAVDNNELSWDEKLDLVRLDD 90

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               S   + +K  ++      A++T SAND +   G+ + G    F   M+N+AKK+GM
Sbjct: 91  PSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLGDRLDG--ADFPKEMNNQAKKLGM 148

Query: 172 QN-TIYKNASGLHDKN 186
            + T + +ASGL    
Sbjct: 149 SSKTTFVSASGLDVDG 164


>gi|260898942|ref|ZP_05907383.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus Peru-466]
 gi|308089342|gb|EFO39037.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
           parahaemolyticus Peru-466]
          Length = 123

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 7/101 (6%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQ 94
           F S +++  A ++ AK     +++D +  ++   K+ +    PASLTKMMT Y+I + L 
Sbjct: 26  FASPVVVPDAPQIAAK---GYVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELA 82

Query: 95  SKKLHLNTQIPVSKTAATQN---PSKLYLKEKTYFTTEQGI 132
              +  +  + +SK A  +N    SK++++  T        
Sbjct: 83  RGNISEDDDVTISKNAWAKNFPDSSKMFIEVGTTVKVRDLN 123


>gi|163838956|ref|YP_001623361.1| D-alanyl-D-alanine carboxypeptidase [Renibacterium salmoninarum
           ATCC 33209]
 gi|162952432|gb|ABY21947.1| D-alanyl-D-alanine carboxypeptidase [Renibacterium salmoninarum
           ATCC 33209]
          Length = 324

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 104/271 (38%), Gaps = 22/271 (8%)

Query: 14  FLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHA-------KPKYSSIVIDVNKNQM 66
              +    +    +I L+      + I  ++ S+  A       +   S +++D      
Sbjct: 1   MFRFWAKLLLAATSIILLVTACATATIGPTVTSDPVAGYSVNWPQSPASIMLVDGKT--P 58

Query: 67  TGFKQDEPRYP-ASLTKMMTLYIIFEY--LQSKK----LHLNTQIPVSKTAATQ-NPSKL 118
              +  +   P AS  K++T   + +   L+       + L      S  A  + N + +
Sbjct: 59  LTNQPAQQPAPTASTAKIITALTVLKENPLKIGDDGPTIKLGRIDVKSYEAYREANGTVV 118

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            + E    +  Q + A++  SAN+++ +   +  GS + +     +  +++G+  T    
Sbjct: 119 PVYEGMEISQHQILEAMLLPSANNLADSLARWSFGSLEDYRQSAQDFIRELGLTKTTIGI 178

Query: 179 ASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-RIITNHNKLLNKMHNI 237
            +  +D +  +TA D A+L     +N P       +          + N N LL + H +
Sbjct: 179 DASGYDPSTQSTATDLAVLAAAAMRN-PVIADILGLAAVDGGTMGKLVNTNNLLGQ-HGL 236

Query: 238 DGIKTGYTRNSG--FNIVTSLRYKDDPIVAV 266
            G+KTG T  +G  F  V     +   ++ V
Sbjct: 237 IGLKTGTTPQAGGVFLFVARAVVEGLDVIFV 267


>gi|56807794|ref|ZP_00365645.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Streptococcus
           pyogenes M49 591]
          Length = 267

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 32/212 (15%)

Query: 132 ILALITRSANDVSTAFGEFISGSEK-KFAILMSNKAKKIGMQNTIYKNASGLHDK----- 185
           +      S+N  +     ++S ++   F   ++  AK++GM NT + NASG   +     
Sbjct: 1   MTMTAVPSSNAATVMIANYLSNNDASAFIDRINATAKQLGMTNTHFSNASGAAAQAFQGY 60

Query: 186 ----------NQITTARDQAILGILLRKNFPQYYKYF------SIRKFRYRNRIITNHNK 229
                     + ITTARD + L     K +P+   +       ++    Y     T ++ 
Sbjct: 61  YNPTKYDLSASNITTARDLSKLLYAFLKKYPEIISFTNKSVVHTMVGTPYEEEFHTYNHS 120

Query: 230 LLNK---MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE--LI 284
           L +    M  +DG+KTG + ++ FN + + +     ++ +VMG+    +++ +      +
Sbjct: 121 LPDNQFGMKGVDGLKTGSSPSAAFNAMITAKRGKTRLITIVMGVGDWSDQNGEFYRHPFV 180

Query: 285 TSFLEK-----KTLKHQQTHRKDNLSSTSLKK 311
            +  EK     KTL  +   + + L   + K+
Sbjct: 181 NALTEKGFKDSKTLSKKARQKLEKLVPQTKKE 212


>gi|46203560|ref|ZP_00051352.2| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 110

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 6/108 (5%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLY 87
           +L+G +  L + M   A+ + A      +V++ +  ++   +   +P YPAS+TK+MT Y
Sbjct: 8   RLIGTLAALGL-MAGTATAVTAP----ILVVEADSGKVLYSQGATDPWYPASITKLMTTY 62

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           +  + ++  K+ L+T + +S  AA + PSK+  K  T  T +  +  +
Sbjct: 63  VALDMVRQGKISLDTLLTISPAAAAEPPSKMGFKPGTQITLDNALKII 110


>gi|313115459|ref|ZP_07800926.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622226|gb|EFQ05714.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 446

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 129/339 (38%), Gaps = 58/339 (17%)

Query: 24  IQRNIQLM--GKILFLSIIMISMA----SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP 77
           ++R   L+    +LF  +++ + A    + ++     S+ +++ + N +   K    +  
Sbjct: 1   MKRIFALVLSFAVLFSCLVLPAGAMFDPTPVYQVQAQSAYIVNTDTNIIVYDKDSTKQVS 60

Query: 78  AS-LTKMMTLYIIFEYLQSKKLHLNTQI----PVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           A  LTK MT+ ++         HL+        +S      N + +  +    FT  + +
Sbjct: 61  AGGLTKYMTIALLLTNYAD---HLDDTFQMPFAISDYVYNTNNADM--RSNETFTYREAM 115

Query: 133 LALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
            A++TR+AN+ +      +SG +   +   M+  +++IG   + + +A G+     +T A
Sbjct: 116 YAMLTRNANEAAMGLAYALSGGDLASWVSQMNILSQRIGTTGSTWTDACGIS-SGNVTCA 174

Query: 192 RDQAILGILLRKNFPQYYKYFSIRKFRYRNR-------IITNHNKLLNKMHN-------I 237
            D  ++   L  +F  + +      F    +       ++ + N  L+K          +
Sbjct: 175 VDMYLILRYLM-SFDAFVEVSGAPSFTMPAKEKHRSSSVLVSQNAALSKSSGGKYYRSAM 233

Query: 238 DGIK---TGYTRNSGF-NIVTSLRYKDDPIVAVVMGMPTSQERDQ---------KALELI 284
            G     T +  +SG  + V+         +  VM  P + +            + ++L+
Sbjct: 234 QGGMCDVTAFKSDSGNQSYVSWANKDGATYIFCVMQSPDTCDDFGYATRRPALCETVKLM 293

Query: 285 TSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYS 323
               +  +++             +L   L + ++   YS
Sbjct: 294 DWVFDSFSIQ------------AALDTDLTLAEIPVKYS 320


>gi|238925895|ref|YP_002939413.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium rectale ATCC
           33656]
 gi|238877572|gb|ACR77279.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium rectale ATCC
           33656]
 gi|291522651|emb|CBK80944.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus catus GD/7]
          Length = 318

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 105/266 (39%), Gaps = 34/266 (12%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S I++D + +++   K  +EP+ PASL K+     + EY  +    L++ +     A 
Sbjct: 60  AKSLILVDCSDDEIFVSKNENEPQIPASLAKLF----VIEYASTL-ADLDSIVVADYGAI 114

Query: 112 T--QNPSKLY-LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKK--------- 157
           +  +  S +  +KEK YF       A++  S ND +    ++  G  S +          
Sbjct: 115 SLTKPGSSVAQIKEKEYF-LHNLFAAMLVPSGNDAAYVVADYCGGLLSPQAESCQERVRI 173

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   ++   ++ G  +T+  + SG   +  +TT  D   +   L + +  + +  S   +
Sbjct: 174 FMENLNLHLQQQGYLDTVLYDPSGFDMEA-LTTTLDLKEVVYRLLE-YSWFREIVSQNTY 231

Query: 218 RYR-----NRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
                    +I  N N  L+        N+ GIKTG   +  +N++   +      +   
Sbjct: 232 TATLPDGSTQIWQNTNAFLDPTSEYYNENVCGIKTGSLSDD-YNLIVLYQQHGKEFLICS 290

Query: 268 MGMPTSQERDQKALELITSFLEKKTL 293
           +G  +   R      ++ +  E   L
Sbjct: 291 LGSQSDSSRYDDVNFILKTIDESYYL 316


>gi|163815706|ref|ZP_02207078.1| hypothetical protein COPEUT_01887 [Coprococcus eutactus ATCC 27759]
 gi|158449011|gb|EDP26006.1| hypothetical protein COPEUT_01887 [Coprococcus eutactus ATCC 27759]
          Length = 318

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 105/266 (39%), Gaps = 34/266 (12%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S I++D + +++   K  +EP+ PASL K+     + EY  +    L++ +     A 
Sbjct: 60  AKSLILVDCSDDEIFVSKNENEPQIPASLAKLF----VIEYASTL-ADLDSIVVADYGAI 114

Query: 112 T--QNPSKLY-LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKK--------- 157
           +  +  S +  +KEK YF       A++  S ND +    ++  G  S +          
Sbjct: 115 SLTKPGSSVAQIKEKEYF-LHNLFAAMLVPSGNDAAYVVADYCGGLLSPQAESCQERVRI 173

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   ++   ++ G  +T+  + SG   +  +TT  D   +   L + +  + +  S   +
Sbjct: 174 FMENLNLHLQQQGYLDTVLYDPSGFDMEA-LTTTLDLKEVVYRLLE-YSWFREIVSQNTY 231

Query: 218 RYR-----NRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
                    +I  N N  L+        N+ GIKTG   +  +N++   +      +   
Sbjct: 232 TATLPDGSTQIWQNTNAFLDPTSEYYNENVCGIKTGSLSDD-YNLIVLYQQHGKEFLICS 290

Query: 268 MGMPTSQERDQKALELITSFLEKKTL 293
           +G  +   R      ++ +  E   L
Sbjct: 291 LGSQSDSSRYDDVNFILKTIDESYYL 316


>gi|330878883|gb|EGH13032.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 181

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 9/151 (5%)

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           + +      G    F + M+ KAK +GM++T Y   +GL   N ++TARD   L +  RK
Sbjct: 1   AASLAHSYPGGYPAFILAMNAKAKALGMKHTAYVEPTGLSVYN-VSTARDLTKLVMAARK 59

Query: 204 NFPQYYKYFSI--RKFRYRNRIIT----NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSL 256
            +P   +  +   +   +R    T    N + L+ K   +I   KTG+T  +G  +V   
Sbjct: 60  -YPMLSELSTTEQKMVTFRKPTYTLGFSNTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLT 118

Query: 257 RYKDDPIVAVVMGMPTSQERDQKALELITSF 287
              + P+  V++           A  +    
Sbjct: 119 SMANRPVSVVILDAFGKYTHFADASRIRKWM 149


>gi|118587323|ref|ZP_01544750.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni ATCC BAA-1163]
 gi|118432312|gb|EAV39051.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni ATCC BAA-1163]
          Length = 273

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 112/266 (42%), Gaps = 32/266 (12%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++V +++   +   K  + R P AS+TK++ +Y ++  ++  +L+   Q+  +K  A
Sbjct: 9   AASALVAELD-GSVLAEKNADQRVPIASVTKLIIIYQLYAAVERHQLNWTDQLTTTKRIA 67

Query: 112 TQNP----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                   +++ L E   +T +  + AL+  S N  +  F E +  +   +        +
Sbjct: 68  EFTKGEVVAEIKLTEGETYTVKDALDALLILSENTFAFVFAEKLFKNLTNWHRKTIALLE 127

Query: 168 KIGMQNTIYKNASGLHDKNQIT--------------TARDQAILGILLRKNFPQYYKYFS 213
             G+ N I  N +GL +++  T              +A++  I+   +   FP+  K   
Sbjct: 128 SWGINNPIIPNPAGLSNQDLETYKDPEMTDSYEPLFSAKEVLIITEKIVDRFPEVLKIAQ 187

Query: 214 IRKFRYRNRIIT----NHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             KF +++        N  K L    +   G+KTG + ++  ++V  ++      V V +
Sbjct: 188 EWKFNFKSNRQEYPYLNRFKFLAITKHKWIGLKTGTSPDT-ESLVGVVQVDQKKFVTVYL 246

Query: 269 GM------PTSQERDQKALELITSFL 288
                   P  +    ++ ++++S L
Sbjct: 247 AAKIDFLEPKGRNCYVESEKMLSSVL 272


>gi|213423411|ref|ZP_03356398.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 160

 Score =   99 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 12/131 (9%)

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
           Y  +  ++F +      N N LL     N+DGIKTG+T  +G+N+V S       +++ V
Sbjct: 3   YAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLVASATEGQMRLISAV 62

Query: 268 MGMPTSQERDQKALELITS---FLEK-KTLKHQQTHRKD-------NLSSTSLKKSLMIK 316
           MG  T + R+ ++ +L+T    F E    LK  +    +       + +S  + K + + 
Sbjct: 63  MGGRTYKGRETESKKLLTWGFRFFETVNPLKAGKEFASEPAWFGNTDRASLGVDKDVYLT 122

Query: 317 KLKRTYSQFKK 327
             +      K 
Sbjct: 123 IPRGRMKDLKA 133


>gi|116491537|ref|YP_811081.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni PSU-1]
 gi|116092262|gb|ABJ57416.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni PSU-1]
          Length = 272

 Score =   99 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 111/267 (41%), Gaps = 32/267 (11%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++V +++   +   K    R P AS+TK++ +Y ++  ++  +L+   Q+  +K  A
Sbjct: 8   AASALVAELD-GSVLAEKNAHQRVPIASVTKLIIIYQLYAAVERHQLNWTDQLTTTKRIA 66

Query: 112 TQNP----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                   +++ L E   +T +  + AL+  S N  +  F E +  +   +        +
Sbjct: 67  EFTKGEVVAEIKLTEGETYTVKDALDALLILSENTFAFVFAEKLFKNLTNWHRKTIALLE 126

Query: 168 KIGMQNTIYKNASGLHDKNQIT--------------TARDQAILGILLRKNFPQYYKYFS 213
             G+ N I  N +GL +++  T              +A++  I+   +   FP+  K   
Sbjct: 127 SWGINNPIIPNPAGLSNQDLETYKDPEMTDSYEPLFSAKEVLIITEKIVDRFPEVLKIAQ 186

Query: 214 IRKFRYRNRIIT----NHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             KF +++        N  K L    +   G+KTG + ++  + V  ++      V V +
Sbjct: 187 EWKFNFKSNRQEYPYLNRFKFLAITKHKWIGLKTGTSPDT-ESFVGIVQSDQKQFVTVYL 245

Query: 269 GM------PTSQERDQKALELITSFLE 289
                   P  +    ++ ++++S L+
Sbjct: 246 AAKIDFLEPKGRNCYVESEKMLSSVLK 272


>gi|290891137|ref|ZP_06554199.1| hypothetical protein AWRIB429_1589 [Oenococcus oeni AWRIB429]
 gi|290479101|gb|EFD87763.1| hypothetical protein AWRIB429_1589 [Oenococcus oeni AWRIB429]
          Length = 273

 Score = 99.6 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 111/267 (41%), Gaps = 32/267 (11%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++V +++   +   K    R P AS+TK++ +Y ++  ++  +L+   Q+  +K  A
Sbjct: 9   AASALVAELD-GSVLAEKNAHQRVPIASVTKLIIIYQLYAAVERHQLNWTDQLTTTKRIA 67

Query: 112 TQNP----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                   +++ L E   +T +  + AL+  S N  +  F E +  +   +        +
Sbjct: 68  EFTKGEVVAEIKLTEGETYTVKDALDALLILSENTFAFVFAEKLFKNLTNWHRKTIALLE 127

Query: 168 KIGMQNTIYKNASGLHDKNQIT--------------TARDQAILGILLRKNFPQYYKYFS 213
             G+ N I  N +GL +++  T              +A++  I+   +   FP+  K   
Sbjct: 128 SWGINNPIIPNPAGLSNQDLETYKDPEMTDSYEPLFSAKEVLIITEKIVDRFPEVLKIAQ 187

Query: 214 IRKFRYRNRIIT----NHNKLLNKMHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
             KF +++        N  K L    +   G+KTG + ++  + V  ++      V V +
Sbjct: 188 EWKFNFKSNRQEYPYLNRFKFLAITKHKWIGLKTGTSPDT-ESFVGIVQSDQKQFVTVYL 246

Query: 269 GM------PTSQERDQKALELITSFLE 289
                   P  +    ++ ++++S L+
Sbjct: 247 AAKIDFLEPKGRNCYVESEKMLSSVLK 273


>gi|266623881|ref|ZP_06116816.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
 gi|288864301|gb|EFC96599.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
          Length = 145

 Score = 99.2 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 61/148 (41%), Gaps = 24/148 (16%)

Query: 28  IQLMGKILFLSIIMISMA---------------SELHAKPKYSSIVIDVNKNQMTGFKQ- 71
           ++    ILF  ++ +++A                   A      I++D +   +   K  
Sbjct: 3   MRHKKNILFYFLLCMAVAFTGLTPMTVYGAADWPSEVAMEADGGILMDADTGTILYGKNI 62

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA---TQNPSKLYLKEKTYFTT 128
           +E  YPAS+TK++T  ++ +     +  L+  +  S+ A     Q    L +      + 
Sbjct: 63  NEAYYPASITKLLTAQVVLD-----RCRLDEVVEFSQNAVYNVEQGSKSLSMDTGDRMSV 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK 156
           +  +  LI  SAN+V+ A  E  +GS +
Sbjct: 118 KDCLYGLILHSANEVANALAEHAAGSTE 145


>gi|298231089|ref|ZP_06964770.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae str.
           Canada MDR_19F]
          Length = 134

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 68/136 (50%), Gaps = 7/136 (5%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTK 82
           +++    +  +  L     ++A +     K+ +I ++ N  ++   K   +P   AS+TK
Sbjct: 1   MKKIFLTLLTVSLLGGASTAVAQDFTIAAKH-AIAVEANTGKILYEKDATQPVEIASITK 59

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITR 138
           ++T+Y+++E L++  + L+T + +S            S + ++ + Y T E+ + A +  
Sbjct: 60  LITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNY-TVEELLEATLVS 118

Query: 139 SANDVSTAFGEFISGS 154
           SAN  + A  E I+GS
Sbjct: 119 SANSAAIALAEKIAGS 134


>gi|153595|gb|AAA26866.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
          Length = 210

 Score = 98.4 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 12/164 (7%)

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH----NIDG 239
           D+    +A D AI+   L K +PQ  +        +    IT+ N +L  M       DG
Sbjct: 26  DEENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDG 85

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP----TSQERDQKALELITS----FLEKK 291
           +KTG T  +G + V +   K   ++ VV+           R      L+      F  +K
Sbjct: 86  LKTGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRK 145

Query: 292 TLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
            ++    ++         K+  +I          +++  ++  +
Sbjct: 146 IVQQGDAYQDSKAPVQDGKEDTVIAVAPEDIYLIERVGNQSSQS 189


>gi|268607998|ref|ZP_06141729.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus flavefaciens
           FD-1]
          Length = 172

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 2/159 (1%)

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
             +AND  T   E    S ++F   M+++A  +G+++T + +  G HD  + TTA D A+
Sbjct: 4   VGNANDALTVLAEKSERSAEEFVKRMNSEAFDLGLRDTAFYSPDGYHDDREYTTAHDIAV 63

Query: 197 LGILLRKNFPQYYKYFSIRKFRYRNRI-ITNHNKLLNKMHNIDGIKTGYTRNSGFNIV-T 254
           +   L K       + + R F    R  + N NKL        G K  ++ ++G+ I   
Sbjct: 64  ICAKLAKYDFLAPFFSTWRDFVGEGRTELVNENKLSRTYDQHIGFKAVHSDHTGYCIAEG 123

Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTL 293
               K    VAVV+G   +      A  L+     +  +
Sbjct: 124 GDNGKGMRCVAVVLGAEDADTMYDTAKLLLKKGYTEYKV 162


>gi|307699728|ref|ZP_07636784.1| serine-type D-Ala-D-Ala carboxypeptidase [Mobiluncus mulieris
           FB024-16]
 gi|307615090|gb|EFN94303.1| serine-type D-Ala-D-Ala carboxypeptidase [Mobiluncus mulieris
           FB024-16]
          Length = 305

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 94/255 (36%), Gaps = 32/255 (12%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
             +VID    Q +    ++    PASL K+   ++    L       N ++ VS+ A   
Sbjct: 55  GYVVIDEASQQRIAAAGENTEITPASLAKL---FVAEYALAVAD--PNDEVSVSREALTK 109

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-----------KKFA 159
           A    S   +   TY   +  + A++  S ND + A  EF  G               F 
Sbjct: 110 AKPGSSLAGIVPGTY-RLQDLLAAMLVPSGNDAAYAVAEFCGGKTHPGTAGTDQRIDLFM 168

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITT----ARDQAILGILLRKNFPQYYKYFSIR 215
             ++   KK G  +T   + SG   +   T     A  + +L     ++  +  +Y +I 
Sbjct: 169 TDLAEYLKKQGWSHTRINDPSGYDPRAVSTPSEIAAVSEKLLSRQWIRDIVKSQRY-AIA 227

Query: 216 KFRYRNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
               ++ ++ N N++LN      +  + G+KTG       N+           + V +G 
Sbjct: 228 PLSGQHLMMVNTNQMLNPESIYYIPEVAGLKTGSLGKI-HNLAILCAKSGHDYLIVSLGS 286

Query: 271 PTSQERDQKALELIT 285
            +   R      LI+
Sbjct: 287 TSEASRYDDLNNLIS 301


>gi|227874829|ref|ZP_03992982.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
 gi|227844604|gb|EEJ54760.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
          Length = 305

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 94/255 (36%), Gaps = 32/255 (12%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
             +VID    Q +    ++    PASL K+   ++    L       N ++ VS+ A   
Sbjct: 55  GYVVIDEASQQRIAAAGENTEITPASLAKL---FVAEYALAVAD--PNDEVSVSREALTK 109

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-----------KKFA 159
           A    S   +   TY   +  + A++  S ND + A  EF  G               F 
Sbjct: 110 AKPGSSLAGIVPGTY-RLQDLLAAMLVPSGNDAAYAVAEFCGGKTHPGTAGTDQRIDLFM 168

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITT----ARDQAILGILLRKNFPQYYKYFSIR 215
             ++   KK G  +T   + SG   +   T     A  + +L     ++  +  +Y +I 
Sbjct: 169 TDLAEYLKKQGWSHTRINDPSGYDPRAVSTPSEIAAVSEKLLSRQWIRDIVKSQRY-AIA 227

Query: 216 KFRYRNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
               ++ ++ N N++LN      +  + G+KTG       N+           + V +G 
Sbjct: 228 PLSGQHLMMVNTNQMLNPESIYYIPEVAGLKTGSLGKI-HNLAILCAKSGHDYLIVSLGS 286

Query: 271 PTSQERDQKALELIT 285
            +   R      LI+
Sbjct: 287 TSEASRYDDLNNLIS 301


>gi|295104652|emb|CBL02196.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 447

 Score = 97.6 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/336 (16%), Positives = 125/336 (37%), Gaps = 52/336 (15%)

Query: 24  IQRNIQLMGKILFLSIIMISMA------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP 77
           ++R   L+   +FL   ++  A      S ++     S+ +++ + N +   K    +  
Sbjct: 1   MKRIFALVLSFVFLLSCLVLPAGAMFDPSPVYQVQAASAYIVNTDTNIIVYDKDSTKQVS 60

Query: 78  AS-LTKMMTLYIIFEYLQSKKLHLNTQ-IPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           A  LTK MTL ++      +  +       +S      N + +  +    FT  + + A+
Sbjct: 61  AGGLTKYMTLAVLLTNYADQLDNTFQMPFAISDYVYNTNNADM--RSNETFTYREAMYAM 118

Query: 136 ITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +TR+AN+ +      +SG +   +   M+  +++IG   + + +A G+ D    T A D 
Sbjct: 119 LTRNANEAAMGVAYTLSGGDLDGWVAQMNTLSQRIGTTASSWTDACGI-DSGNTTCAVDM 177

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNR-------IITNHNKLLNK----------MHNI 237
            ++   L  +F  + +      F    +       ++ + N  L+K          M   
Sbjct: 178 YLILRYLM-SFDAFVEVSGAPSFTMPAKEKHRSSSVLVSQNAALSKASGGSYYRSAMQGG 236

Query: 238 DGIKTGYTRNSG-FNIVTSLRYKDDPIVAVVMGMPTSQERDQ---------KALELITSF 287
               T +  ++G  + V+         +  VM  P S +            + ++L+   
Sbjct: 237 MCSVTAFKNDTGTQSYVSWGNKDGATYIFCVMDSPDSCDTFGYANRRPALFETVKLMDWV 296

Query: 288 LEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYS 323
            +  +++             +L   L I ++   YS
Sbjct: 297 FDSFSIQ------------AALDTDLTIAEIPVRYS 320


>gi|269976579|ref|ZP_06183564.1| putative D-alanyl-D-alanine carboxypeptidase [Mobiluncus mulieris
           28-1]
 gi|269935380|gb|EEZ91929.1| putative D-alanyl-D-alanine carboxypeptidase [Mobiluncus mulieris
           28-1]
          Length = 305

 Score = 97.6 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 93/255 (36%), Gaps = 32/255 (12%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
             +VID    Q +    ++    PASL K+   ++    L       N ++ VS+ A   
Sbjct: 55  GYVVIDEASQQRIAAAGENTEITPASLAKL---FVAEYALAVAD--PNDEVSVSREALTK 109

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-----------KKFA 159
           A    S   +   TY   +  + A++  S ND + A  EF  G               F 
Sbjct: 110 AKPGSSLAGIVPGTY-RLQDLLAAMLVPSGNDAAYAVAEFCGGKTHPGTAGTDQRIDLFM 168

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITT----ARDQAILGILLRKNFPQYYKYFSIR 215
             ++   KK G  +T   + SG   +   T     A  + +L     ++  +  +Y  I 
Sbjct: 169 TDLAEYLKKQGWSHTRINDPSGYDPRAVSTPSEIAAVSEKLLSRQWIRDIVKSQRY-EIA 227

Query: 216 KFRYRNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
               ++ ++ N N++LN      +  + G+KTG       N+           + V +G 
Sbjct: 228 PLSGQHLMMVNTNQMLNPESIYYIPEVAGLKTGSLGKI-HNLAILYAKSGHDYLIVSLGS 286

Query: 271 PTSQERDQKALELIT 285
            +   R      LI+
Sbjct: 287 TSEASRYDDLNNLIS 301


>gi|160943144|ref|ZP_02090381.1| hypothetical protein FAEPRAM212_00629 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445613|gb|EDP22616.1| hypothetical protein FAEPRAM212_00629 [Faecalibacterium prausnitzii
           M21/2]
          Length = 447

 Score = 97.6 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 125/336 (37%), Gaps = 52/336 (15%)

Query: 24  IQRNIQLMGKILFLSIIMISMA------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP 77
           ++R   L+   +FL   ++  A      S ++     S+ +++ + N +   K    +  
Sbjct: 1   MKRIFALVLSFVFLLSCLVLPAGAMFDPSPVYQVQAASAYIVNTDTNIIVYDKDSTKQVS 60

Query: 78  AS-LTKMMTLYIIFEYLQSKKLHLNTQ-IPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           A  LTK MTL ++      +  +       +S      N + +  +    FT  + + A+
Sbjct: 61  AGGLTKYMTLAVLLTNYADQLDNTFQMPFAISDYVYNTNNADM--RSNETFTYREAMYAM 118

Query: 136 ITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +TR+AN+ +      ++G +   +   M+  +++IG   + + +A G+ D    T A D 
Sbjct: 119 LTRNANEAAMGVAYTLAGGDLDGWVAQMNTLSQRIGTTASNWTDACGI-DSGNTTCAVDM 177

Query: 195 AILGILLRKNFPQYYKYFSIRKFRYRNR-------IITNHNKLLNK----------MHNI 237
            ++   L  +F  + +      F    +       ++ + N  L+K          M   
Sbjct: 178 YLILRYLM-SFDAFVEVSGAPSFTMPAKEKHRSSSVLVSQNAALSKASGGSYYRSAMQGG 236

Query: 238 DGIKTGYTRNSG-FNIVTSLRYKDDPIVAVVMGMPTSQERDQ---------KALELITSF 287
               T +  ++G  + V+         +  VM  P S +            + ++L+   
Sbjct: 237 MCNVTAFKNDTGTQSYVSWGNKDGATYIFCVMDSPDSCDTFGYANRRPALFETVKLMDWV 296

Query: 288 LEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYS 323
            +  +++             +L   L I ++   YS
Sbjct: 297 FDSFSIQ------------AALDTDLTIAEIPVRYS 320


>gi|315654470|ref|ZP_07907377.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
 gi|315491223|gb|EFU80841.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
          Length = 305

 Score = 97.2 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 94/255 (36%), Gaps = 32/255 (12%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
             +VID    Q +    ++    PASL K+   ++    L       N ++ VS+ A   
Sbjct: 55  GYVVIDEASQQRIAAAGENTEITPASLAKL---FVAEYALAVAD--PNDEVSVSREALTK 109

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-----------KKFA 159
           A    S   +   TY   +  + A++  S ND + A  EF  G               F 
Sbjct: 110 AKPGSSLAGIVPGTY-RLQDLLAAMLVPSGNDAAYAVAEFCGGKTHPGTAGTDQRIDLFM 168

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITT----ARDQAILGILLRKNFPQYYKYFSIR 215
             ++   KK G  +T   + SG   +   T     A  + +L     ++  +  +Y +I 
Sbjct: 169 TDLAEYLKKQGWSHTRINDPSGYDPRAVSTPSEIAAVSEKLLSRQWIRDIVKSQRY-AIA 227

Query: 216 KFRYRNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
               ++ ++ N N++LN      +  + G+KTG       N+           + V +G 
Sbjct: 228 PLSGQHLMMVNTNQMLNPQSIYYIPEVAGLKTGSLGKI-HNLAILYAKSGHDYLIVSLGS 286

Query: 271 PTSQERDQKALELIT 285
            +   R      LI+
Sbjct: 287 TSKASRYDDLNNLIS 301


>gi|298345799|ref|YP_003718486.1| hypothetical protein HMPREF0573_10673 [Mobiluncus curtisii ATCC
           43063]
 gi|304390497|ref|ZP_07372450.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315657704|ref|ZP_07910585.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|298235860|gb|ADI66992.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 43063]
 gi|304326253|gb|EFL93498.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315491707|gb|EFU81317.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 305

 Score = 97.2 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 94/255 (36%), Gaps = 32/255 (12%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
             +VID    Q +    ++    PASL K+   ++    L       N ++ VS+ A   
Sbjct: 55  GYVVIDEASQQRIAAAGENTEITPASLAKL---FVAEYALAVAD--PNDEVSVSREALTK 109

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-----------KKFA 159
           A    S   +   TY   +  + A++  S ND + A  EF  G               F 
Sbjct: 110 AKPGSSLAGIVPGTY-RLQDLLAAMLVPSGNDAAYAVAEFCGGKTHPGTAGTDQRIDLFM 168

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITT----ARDQAILGILLRKNFPQYYKYFSIR 215
             ++   KK G  +T   + SG   +   T     A  + +L     ++  +  +Y +I 
Sbjct: 169 TDLAEYLKKQGWSHTRINDPSGYDPRAVSTPSEIAAVSEKLLSRQWIRDIVKSQRY-AIA 227

Query: 216 KFRYRNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
               ++ ++ N N++LN      +  + G+KTG       N+           + V +G 
Sbjct: 228 PLSGQHLMMVNTNQMLNPESIYYIPEVAGLKTGSLGKI-HNLAILYAKSGHDYLIVSLGS 286

Query: 271 PTSQERDQKALELIT 285
            +   R      LI+
Sbjct: 287 TSKASRYDDLNNLIS 301


>gi|153811401|ref|ZP_01964069.1| hypothetical protein RUMOBE_01793 [Ruminococcus obeum ATCC 29174]
 gi|149832528|gb|EDM87612.1| hypothetical protein RUMOBE_01793 [Ruminococcus obeum ATCC 29174]
          Length = 319

 Score = 97.2 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 104/267 (38%), Gaps = 32/267 (11%)

Query: 53  KYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S I++D++ + +   K ++E + PASL K+     + EY  +    L++ +P +  A 
Sbjct: 61  AKSLILVDLSNDNIFISKRENEQQLPASLAKLF----VIEYAATL-ADLDSIVPANYEAI 115

Query: 112 --TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS--------GSEKK---F 158
             T+  S +   +   +       A++  S ND +    ++           S+++   F
Sbjct: 116 QLTKPGSSVANIDAKKYFLHNLFAAMLVPSGNDAAYVVADYCGSILSPQAKNSQERINVF 175

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
              ++N  +  G +NTI  + SG  D N +TT  D   +   L +    +    S   + 
Sbjct: 176 MEHLNNYLQNQGYENTILYDPSGY-DVNALTTVSDLKSVSTHLLEK-QWFRDIVSKSNYT 233

Query: 219 YR-----NRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
                   +   N N  L++       N+ GIKTG   N  +N+V   +      +   +
Sbjct: 234 ATLPDGSTQTWRNTNTFLDQTSEYYNENVKGIKTGSLSND-YNLVVLYQQHGKEFLICSL 292

Query: 269 GMPTSQERDQKALELITSFLEKKTLKH 295
           G  +   R      ++ +  E   L  
Sbjct: 293 GSQSDSSRYDDVNYILKTIDESDYLTK 319


>gi|306818126|ref|ZP_07451857.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|304649090|gb|EFM46384.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
          Length = 305

 Score = 96.9 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 95/255 (37%), Gaps = 32/255 (12%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
             +VID    Q +    ++    PASL K+   ++    L       N ++ VS+ A   
Sbjct: 55  GYVVIDEASQQRIAAAGENTEITPASLAKL---FVAEYALTVAD--PNDEVSVSREALTK 109

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-----------KKFA 159
           A    S   +   TY   +  + A++  S ND + A  EF  G               F 
Sbjct: 110 AKPGSSLAGIVPGTY-RLQDLLAAMLVPSGNDAAYAVAEFCGGKTHPGTAGTDQRIDLFM 168

Query: 160 ILMSNKAKKIGMQNTIYKNASGLHDKNQITT----ARDQAILGILLRKNFPQYYKYFSIR 215
             ++   KK G  +T   + SG   +   T     A  + +L     ++  +  +Y +I 
Sbjct: 169 TDLAEYLKKQGWSHTRINDPSGYDPRAVSTPSEIAAVSEKLLSRQWIRDIVKSQRY-AIA 227

Query: 216 KFRYRNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
               ++ ++ N N++LN      +  + G+KTG       N+           + V +G 
Sbjct: 228 PLSGQHLMMVNTNQMLNPESIYYIPEVAGLKTGSLGKI-HNLAILCAKSGHDYLIVSLGS 286

Query: 271 PTSQERDQKALELIT 285
            ++  R      LI+
Sbjct: 287 TSAASRYDDLNNLIS 301


>gi|322514766|ref|ZP_08067790.1| serine-type D-Ala-D-Ala carboxypeptidase [Actinobacillus ureae ATCC
           25976]
 gi|322119262|gb|EFX91390.1| serine-type D-Ala-D-Ala carboxypeptidase [Actinobacillus ureae ATCC
           25976]
          Length = 198

 Score = 96.5 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 11/171 (6%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQ 94
           FLS+  +     +      S +V D   +++   +  +  +  AS+TK+MT  +  E  +
Sbjct: 9   FLSVFFLFPTLSI----AQSYVVYDFTHDKILESRSANNVQPIASVTKLMTANVFLENNK 64

Query: 95  SKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           +K    +    +S         +   L + T     + + A++  S N  + A       
Sbjct: 65  NKNCSAS----ISDEDFDYIKGTGTKLPKYTSIACSELLKAMLVHSDNYAAHALSRSAGM 120

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
           S  +F   M+ KA+++GM++T + ++SGL   N I++A D   L      N
Sbjct: 121 SRSQFIQKMNQKAQQLGMRSTRFSDSSGLSSTN-ISSAMDLVKLAKYSLNN 170


>gi|295102720|emb|CBL00265.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
           L2-6]
          Length = 451

 Score = 96.1 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 107/301 (35%), Gaps = 46/301 (15%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPAS-LTKMMT-LYIIFEYLQSKKLHLNTQIPVSKTA 110
             S+ +++ + N +   K    + PA  LTK MT   ++  Y             +S   
Sbjct: 36  AKSAYIVNTDTNIIVYDKDSSRQVPAGGLTKYMTIALLLTNYADQLDNTFQMPFAISDYV 95

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKI 169
              N     ++    FT  + + A++ R+AN+ +      +SG +   +   M+  +++I
Sbjct: 96  --HNSDNADMRSNETFTYREAVYAMLLRNANEAAMGLAYSLSGGDLAGWVSQMNTLSQRI 153

Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR-------YRNR 222
           G   + + +A GL D   +TTA D  ++   L  +F  +    S   F         ++ 
Sbjct: 154 GTTGSTWTDACGL-DSGNVTTAVDMYLILRYLM-SFDAFVDISSAPAFTMPAKEKHTKSF 211

Query: 223 IITNHNKLLNK----------MHNIDGIKTGYTRNSG-FNIVTSLRYKDDPIVAVVMGMP 271
           ++ N N  LNK          M         Y  + G  + V+         +  +M  P
Sbjct: 212 VLLNQNVALNKTSGGSFYRKSMQGGMCDVMAYKNDHGDQSYVSWANQDGSTYIFCIMQSP 271

Query: 272 T-------SQERDQ--KALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTY 322
                   +  R    +   LI    +  +++             +L   L + ++   Y
Sbjct: 272 DTCDTYGYANRRPALYETTRLIDWVFQSFSIQ------------PALDTDLALAEIPVKY 319

Query: 323 S 323
           S
Sbjct: 320 S 320


>gi|218674624|ref|ZP_03524293.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli GR56]
          Length = 248

 Score = 96.1 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 51/84 (60%)

Query: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           Y+ FS   F +R + +  HN L+ +   +DGI TGYT  SGFN+V+++R  +  +V VV+
Sbjct: 2   YRLFSAASFNFRGKTVRGHNNLMYRYQGMDGINTGYTNASGFNLVSAVRDGNRRVVGVVL 61

Query: 269 GMPTSQERDQKALELITSFLEKKT 292
           G  T++ RD K   L+  +L + +
Sbjct: 62  GGRTARSRDAKMAALLDRYLGRAS 85


>gi|1149632|emb|CAA60207.1| dacF [Clostridium perfringens]
          Length = 96

 Score = 95.7 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 35/87 (40%), Positives = 56/87 (64%)

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
           + L+E   +T E+ +  L+ +SAND + A  E ISGSE+KF  LM+ +A+++G +NT + 
Sbjct: 1   VGLQEGDKYTVEEFVNRLLIQSANDAAVALAEDISGSEEKFRKLMNERAEELGAKNTHFV 60

Query: 178 NASGLHDKNQITTARDQAILGILLRKN 204
           NASGL + + +TT  D A++     KN
Sbjct: 61  NASGLFEDDHMTTPYDLALIMNAASKN 87


>gi|297587953|ref|ZP_06946597.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein
           [Finegoldia magna ATCC 53516]
 gi|297574642|gb|EFH93362.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein
           [Finegoldia magna ATCC 53516]
          Length = 312

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 96/258 (37%), Gaps = 33/258 (12%)

Query: 58  VIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQ 113
           V D+NK +   ++        ASL+K+       +Y    K+ L+  I V++       +
Sbjct: 64  VYDMNKGKYLFYEGGGQLPTVASLSKLF----AIDY-ALTKVKLDDTIEVNRELLELVPE 118

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-----------KKFAILM 162
             S  +LK    +T EQ + A++  S ND + A    I   +             F   +
Sbjct: 119 GSSLAHLKVG-KYTAEQIMQAMLVPSGNDAAFALAYNIGKKDLGDGYSAKKYVDYFVKNL 177

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-- 220
           S      G   T   + SG   +   T  +D   + + L  ++    K      F  +  
Sbjct: 178 SKYLADEGYSKTHLFDPSGFSIQA-DTNLKDINRVTLKLI-DYDFVKKCMGKSSFSIKTS 235

Query: 221 --NRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                  N N+ L+        +I G+KTG T  S +NIV       +  +   +   T+
Sbjct: 236 QGEFTWENTNEFLDPKSAFYNKDIKGVKTG-TMASSYNIVVLYEKDGEKYLITCLASHTN 294

Query: 274 QERDQKALELITSFLEKK 291
           ++R +     I + + KK
Sbjct: 295 EDRYKAVQSAINTIINKK 312


>gi|153853149|ref|ZP_01994558.1| hypothetical protein DORLON_00543 [Dorea longicatena DSM 13814]
 gi|149753935|gb|EDM63866.1| hypothetical protein DORLON_00543 [Dorea longicatena DSM 13814]
          Length = 189

 Score = 94.9 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 10/129 (7%)

Query: 54  YSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-- 110
           +S+ + DV++ ++    Q  +  YPAS TK+MT  +  E        L+  + VS+ A  
Sbjct: 60  HSAALFDVDRKKVDFSYQMFDKIYPASTTKIMTALVALENAD-----LSDVVTVSQNADM 114

Query: 111 --ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                + +   +K     T    +  L+  S ND +TA  E++ GS   FA +M+ +A K
Sbjct: 115 NSFAADEATCGIKAGDKITLSDLLYGLLLHSGNDNATAIAEYVGGSMDGFAEMMNKEAAK 174

Query: 169 IGMQNTIYK 177
           +    T Y 
Sbjct: 175 LMATGTQYA 183


>gi|238059325|ref|ZP_04604034.1| serine-type D-Ala-D-Ala carboxypeptidase [Micromonospora sp. ATCC
           39149]
 gi|237881136|gb|EEP69964.1| serine-type D-Ala-D-Ala carboxypeptidase [Micromonospora sp. ATCC
           39149]
          Length = 274

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 10/120 (8%)

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR--------NRIITNHNK 229
           + SGL D  Q T+A D A++  +   + P + +Y    + R             I N N+
Sbjct: 77  DPSGLDDPGQFTSAYDLALIARVCFAD-PTFRRYALTEQARIPAQPALRRQGFQIQNENQ 135

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER-DQKALELITSFL 288
           L+ +     G KTG+T  +    V + +     +V  ++G      R  ++   L+    
Sbjct: 136 LIYRYPGALGGKTGFTDYARHTYVGAAQCGGRRLVVTLLGAEPRPMRGWEQGAALLDWGF 195


>gi|213023637|ref|ZP_03338084.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 73

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 38/73 (52%)

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG 181
                +       +I +S ND   A  ++++GS++ F  LM+  AK++G+ NT ++   G
Sbjct: 1   PGDQVSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHG 60

Query: 182 LHDKNQITTARDQ 194
           L    Q +TARD 
Sbjct: 61  LDAPGQFSTARDM 73


>gi|228979140|ref|ZP_04139486.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
 gi|228780588|gb|EEM28809.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
          Length = 194

 Score = 92.6 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 71/151 (47%), Gaps = 12/151 (7%)

Query: 162 MSNKAKKIGM-QNTIYKNASGLHDKNQI---TTARDQAILGILLRKNFPQYYKYFSIRK- 216
           M+ KAK++ + Q + + N++G++        TTA D A L   L K+FP       +   
Sbjct: 1   MNKKAKELQLLQPSPFLNSTGINHDTNKQSTTTAIDAAKLAARLVKDFPDVLNITKLTSY 60

Query: 217 -FRYRNRIITNHNKLLN------KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
            F +++  + N NK++       K+  +DG++T ++ N  ++ V++ +  D  +++V++ 
Sbjct: 61  QFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLGDTRLISVILD 120

Query: 270 MPTSQERDQKALELITSFLEKKTLKHQQTHR 300
                    +  +L+    +  +    Q  +
Sbjct: 121 ADEENISFIETKKLLQYGFDPSSYSALQAFK 151


>gi|28493294|ref|NP_787455.1| serine-type D-Ala-D-Ala carboxypeptidase [Tropheryma whipplei str.
           Twist]
 gi|28476335|gb|AAO44424.1| serine-type D-Ala-D-Ala carboxypeptidase [Tropheryma whipplei str.
           Twist]
          Length = 313

 Score = 92.6 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 53/214 (24%), Positives = 101/214 (47%), Gaps = 17/214 (7%)

Query: 57  IVIDVNKN-QMTGFKQDEPRYP-ASLTKMMTLYIIFE-----YLQSK-KLHLNTQ-IPVS 107
           I +DV+ + ++   K ++ ++P AS++K++   ++ E      L     +  +T+ +   
Sbjct: 62  IALDVDGHPELKLRKGNKGKHPIASISKVILALMLIERYSLSELNDGPNITYDTEDVSFF 121

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG-SEKKFAILMSNKA 166
           + +     S   +      T +Q ++ L+  SAN+ +T+  + + G S  KFA       
Sbjct: 122 RNSVKDGDSYAPVYAGLTLTLKQSLIPLMLPSANNYATSLVKHLYGKSYPKFAR---EWL 178

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII-T 225
            K G+ NT    ASGL D+N ++TA +  +L      N P       +++    N  +  
Sbjct: 179 DKNGLYNTDIYEASGLDDRN-VSTADNLIVLAKKAYSN-PVLRGIMRLKEASIPNIGLVR 236

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           N NK L  ++ IDGIKTG +  +  N++ +   K
Sbjct: 237 NTNKALG-INGIDGIKTGSSPAAKSNLLFTAAIK 269


>gi|530914|gb|AAA68435.1| Highly similar to the E.coli dacA and dacC gene products; putative
           [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 108

 Score = 92.2 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPAS 79
            ++I  ++  M     L+   +S A +  A    + +++D    Q+     + + R PAS
Sbjct: 6   RLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPAS 65

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           LTK+MT Y++   + S ++  +  + V + A  +
Sbjct: 66  LTKLMTGYVVDRAIDSHRISPDDIVTVGRDAGRR 99


>gi|253578339|ref|ZP_04855611.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850657|gb|EES78615.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. 5_1_39BFAA]
          Length = 320

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 99/240 (41%), Gaps = 35/240 (14%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S I++D + +++   K  +EP+ PASL K+     + EY  +    L++ +     A 
Sbjct: 34  AKSLILVDCSDDEIFVSKNENEPQIPASLAKLF----VIEYASTL-ADLDSIVVADYGAI 88

Query: 112 T--QNPSKLY-LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKK--------- 157
           +  +  S +  +KEK YF       A++  S ND +    ++  G  S +          
Sbjct: 89  SLTKPGSSVAQIKEKEYF-LHNLFAAMLVPSGNDAAYVVADYCGGLLSPQAESCQERVRI 147

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
           F   ++   ++ G  +T+  + SG   +  +TT  D   +   L + +  + +  S   +
Sbjct: 148 FMENLNLHLQQQGYLDTVLYDPSGFDMEA-LTTTLDLKEVVYRLLE-YSWFREIVSQNTY 205

Query: 218 RYR-----NRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267
                    +I  N N  L+        N+ GIKTG   +  +N++   +     ++ V+
Sbjct: 206 TATLPDGSTQIWQNTNAFLDPTSEYYNENVCGIKTGSLSDD-YNLIVLYQQH-RRLLLVM 263


>gi|169823797|ref|YP_001691408.1| D-alanyl-D-alanine carboxypeptidase [Finegoldia magna ATCC 29328]
 gi|167830602|dbj|BAG07518.1| D-alanyl-D-alanine carboxypeptidase [Finegoldia magna ATCC 29328]
          Length = 312

 Score = 91.9 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 99/258 (38%), Gaps = 33/258 (12%)

Query: 58  VIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK---TAATQ 113
           V D++K +   ++        ASL+K+       +Y    K+ L  +I V++       Q
Sbjct: 64  VYDIDKEEYLFYEGGGQLPTVASLSKLF----AIDY-ALTKVKLEDRIEVNQELLDLVPQ 118

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-----------KKFAILM 162
             S  +LK    +T EQ + A++  S ND + A    I   +             F   +
Sbjct: 119 GSSMAHLKPG-KYTAEQIMQAMLVPSGNDAAFALAYNIGKKDLGDGYSAKKYVNYFVKNL 177

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK-NFPQYYK---YFSIRKFR 218
           S      G   T   + SG   +   T  +D   + + L   +F +      YF+I+  +
Sbjct: 178 SKYLADEGYNKTHLFDPSGFSTQA-DTNLKDINRVALKLIDYDFVKKCMGKSYFTIQTPQ 236

Query: 219 YRNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                  N N+ L+        ++ GIKTG T  S +NIV          +   +   T+
Sbjct: 237 -GEMTWKNTNEFLDSKSAFYNKDVKGIKTG-TMASSYNIVVLYEKDGKKYLITCLASHTN 294

Query: 274 QERDQKALELITSFLEKK 291
           ++R +     I + + KK
Sbjct: 295 EDRYKAVQAAINTIINKK 312


>gi|213026275|ref|ZP_03340722.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 76

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH-NIDGIKTGYTRNS 248
           TARD A+LG  L  + P  Y     ++F + N    N N+LL   + ++DG+KTG T  +
Sbjct: 1   TARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGA 60

Query: 249 GFNIVTSLRYKDDPI 263
           G+N+V S    D  +
Sbjct: 61  GYNLVASATQGDMRL 75


>gi|323359495|ref|YP_004225891.1| D-alanyl-D-alanine carboxypeptidase [Microbacterium testaceum
           StLB037]
 gi|323275866|dbj|BAJ76011.1| D-alanyl-D-alanine carboxypeptidase [Microbacterium testaceum
           StLB037]
          Length = 405

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 96/266 (36%), Gaps = 24/266 (9%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMT--------GFKQDEPRYPASLTKMMTLYIIFEYLQ 94
             A+   A P   S+++ V                  D+ R  AS++K++T  ++ +   
Sbjct: 39  PGAAASVALPSSGSMLVTVQGGGTYLGADPVTWSSGGDDARPIASISKLVTALVVLDAHP 98

Query: 95  SKKLH-LNTQIPVSKTAAT-------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
               +     I  ++           +  +   + +    +    +  ++  SA++ + A
Sbjct: 99  LADANDPGPTIAFAEADTDLYDQFYVRGATIARMPDGAKLSLHDALATMLLPSASNYAVA 158

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206
              +  GSE  +     +   K G+  T   +A+G+ D+N  +T  D   LG L   N  
Sbjct: 159 VARWAFGSEGAYVDAARSWLTKNGLNATRIVDATGIDDRNT-STPSDLVALGTLAAANPA 217

Query: 207 QYYKYFSIR-KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK-----D 260
                 +           I N N LL     I G+KTG   +  FN++ +          
Sbjct: 218 IAAIAATPWVNLPAGPGNIENTNVLLGT-SGITGLKTGNLGDGTFNLLFTSVLDVGIGAP 276

Query: 261 DPIVAVVMGMPTSQERDQKALELITS 286
             ++ + +G  T    +Q  + L+ S
Sbjct: 277 LHVLGIRLGGETRASANQDVVVLLES 302


>gi|222874969|gb|EEF12100.1| predicted protein [Populus trichocarpa]
          Length = 326

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
            +      S ++ DV   Q    +  + R  PASLTK+MT Y+ FE L+ K+L L+  + 
Sbjct: 245 PVPQVAAKSWMLYDVTSGQALASQNADMRIEPASLTKLMTAYLAFEALKEKRLTLDQTVT 304

Query: 106 VSKTA--ATQNPSKLYLKEK 123
            +        + S+++++  
Sbjct: 305 PTDIVRKVKSDESRMFIEAG 324


>gi|303235365|ref|ZP_07321982.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
           BVS033A4]
 gi|302493486|gb|EFL53275.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
           BVS033A4]
          Length = 312

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 99/258 (38%), Gaps = 33/258 (12%)

Query: 58  VIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK---TAATQ 113
           V D++K +   ++        ASL+K+       +Y    K+ L  +I V++       Q
Sbjct: 64  VYDIDKEEYLFYEGGGQLPTVASLSKLF----AIDY-ALTKVKLEDRIEVNQELLDLVPQ 118

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-----------KKFAILM 162
             S  +LK    +T EQ + A++  S ND + A    I   +             F   +
Sbjct: 119 GSSMAHLKPG-KYTAEQIMQAMLVPSGNDAAFALAYNIGKKDLGDGYSAKKYVNYFVKNL 177

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK-NFPQYYK---YFSIRKFR 218
           S      G   T   + SG   +   T  +D   + + L   +F +      YF+I+  +
Sbjct: 178 SKYLADEGYNKTHLFDPSGFSTQA-DTNLKDINRVALKLIDYDFVKKCMGKSYFTIQTPQ 236

Query: 219 YRNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                  N N+ L+        ++ GIKTG T  S +NIV          +   +   T+
Sbjct: 237 -GEMNWKNTNEFLDPKSAFYNKDVKGIKTG-TMASSYNIVVLYEKDGKKYLITCLASHTN 294

Query: 274 QERDQKALELITSFLEKK 291
           ++R +     I + + KK
Sbjct: 295 EDRYKAVQAAINTIINKK 312


>gi|302379859|ref|ZP_07268342.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312337|gb|EFK94335.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
           ACS-171-V-Col3]
          Length = 312

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 98/258 (37%), Gaps = 33/258 (12%)

Query: 58  VIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK---TAATQ 113
           V D++K +   ++        ASL+K+       +Y    K+ L   I V++       Q
Sbjct: 64  VYDIDKEKYLFYEGGGQLPTVASLSKLF----AIDY-ALTKVKLEDSIEVNQGLLDLVPQ 118

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-----------KKFAILM 162
             S  +LK    +T EQ + A++  S ND + A    I   +             F   +
Sbjct: 119 GSSMAHLKPG-KYTAEQIMQAMLVPSGNDAAFALAYNIGKKDLGDGYSAKKYVNHFVKNL 177

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK-NFPQYYK---YFSIRKFR 218
           S      G   T   + SG   +   T  +D   + + L   +F +      YF+I+  +
Sbjct: 178 SKYLADEGYNKTHLFDPSGFSTQA-DTNLKDINRVALKLIDYDFVKKCMGKSYFTIQTPQ 236

Query: 219 YRNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
                  N N+ L+        ++ GIKTG T  S +NIV          +   +   T+
Sbjct: 237 -GEMNWKNTNEFLDPKSAFYNKDVKGIKTG-TMASSYNIVVLYEKNGKKYLITCLASHTN 294

Query: 274 QERDQKALELITSFLEKK 291
           ++R +     I + + KK
Sbjct: 295 EDRYKAVQAAINTIINKK 312


>gi|55823010|ref|YP_141451.1| D-alanyl-D-alanine-carboxypeptidase, penicillin-binding protein,
           truncated [Streptococcus thermophilus CNRZ1066]
 gi|55738995|gb|AAV62636.1| D-alanyl-D-alanine-carboxypeptidase, penicillin-binding protein,
           truncated [Streptococcus thermophilus CNRZ1066]
          Length = 313

 Score = 90.3 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 76/168 (45%), Gaps = 25/168 (14%)

Query: 137 TRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGLH------------ 183
             S+N  +     +++ ++  K+  +M+ K+K++ M NT + NASG              
Sbjct: 4   VLSSNVTTVMLANYLTNNDPDKWLDMMNEKSKELSMTNTKWFNASGAAAVAFKGYYSPQR 63

Query: 184 ---DKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLL---- 231
              +++  TTARD  I+     K +P   KY S     +++          +N  +    
Sbjct: 64  YDNNQSNQTTARDLVIMTYNFIKKYPDILKYTSKPVVAVKEGTPYEETFETYNYSIPGAN 123

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
             +  +DG KTG++    FN + ++++ +  ++A++MG     ++  +
Sbjct: 124 YGLKGVDGSKTGFSPEVAFNYIDTIKHGNQRMIAIIMGSGDWSDQTGE 171


>gi|28572595|ref|NP_789375.1| carboxypeptidase [Tropheryma whipplei TW08/27]
 gi|28410727|emb|CAD67113.1| putative carboxypeptidase [Tropheryma whipplei TW08/27]
          Length = 313

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/214 (24%), Positives = 100/214 (46%), Gaps = 17/214 (7%)

Query: 57  IVIDVNKN-QMTGFKQDEPRYP-ASLTKMMTLYIIFE-----YLQSK-KLHLNTQ-IPVS 107
           I +DV+ + ++   K ++ ++P AS++K++   ++ E      L     +  +T+ +   
Sbjct: 62  IALDVDGHPELKLRKGNKGKHPIASISKVILALMLIERYSLSELNDGPNITYDTEDVSFF 121

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG-SEKKFAILMSNKA 166
           + +     S   +      T +Q ++ L+  SAN+ +T+  + + G S  KFA       
Sbjct: 122 RNSVKDGDSYAPVYAGLTLTLKQSLIPLMLPSANNYATSLVKHLYGKSYPKFAR---EWL 178

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII-T 225
            K G+ NT    ASGL D+N ++T  +  +L      N P       +++    N  +  
Sbjct: 179 DKNGLYNTDIYEASGLDDRN-VSTTDNLIVLAKKAYSN-PVLRGIMRLKEASIPNIGLVR 236

Query: 226 NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYK 259
           N NK L  ++ IDGIKTG +  +  N++ +   K
Sbjct: 237 NTNKALG-INGIDGIKTGSSPAAKSNLLFTAAIK 269


>gi|255521429|ref|ZP_05388666.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
           J1-175]
          Length = 99

 Score = 89.9 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 44/98 (44%), Gaps = 1/98 (1%)

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNI 252
             +L   L    P+  +  S       +   + + N  L  +  +DG+KTG+T  +G+  
Sbjct: 1   LFLLSSKLISTHPEVLETTSKSSVTTDKGAKLESTNDSLGSIQGLDGLKTGFTDEAGYCF 60

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           + +       ++++V+   T+++R +   +L+    ++
Sbjct: 61  IGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVGFKE 98


>gi|213613286|ref|ZP_03371112.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 137

 Score = 89.2 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 12/112 (10%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNK 63
           +     + +  R +Q M     L    IS A             +      S I+ID N 
Sbjct: 21  VVQTMKTTFSARFMQRMALTTALCATFISTAHADDLNIKTMIPGVPQIDAESYILIDYNS 80

Query: 64  NQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
            ++   +  DE R PASLTKMMT Y+I + +++ K      + V   A    
Sbjct: 81  GKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDAWATG 132


>gi|213418658|ref|ZP_03351724.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 88

 Score = 89.2 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 38/78 (48%)

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           +  S ++LK        Q I  +  +S ND   A  +F +GS+  F  LM++    +G++
Sbjct: 11  KGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLK 70

Query: 173 NTIYKNASGLHDKNQITT 190
           NT ++   GL    Q ++
Sbjct: 71  NTHFQTVHGLDADGQYSS 88


>gi|283769461|ref|ZP_06342357.1| serine-type D-Ala-D-Ala carboxypeptidase [Bulleidia extructa W1219]
 gi|283103729|gb|EFC05115.1| serine-type D-Ala-D-Ala carboxypeptidase [Bulleidia extructa W1219]
          Length = 311

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 92/261 (35%), Gaps = 38/261 (14%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
             S  V+D+  +++   K     Y PASLTK+     + +Y Q     L+  I  ++   
Sbjct: 57  AKSYAVMDLTNHKILFSKNSYESYVPASLTKLF----VVDYAQQ-FFQLDDYIHANRETL 111

Query: 111 --ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-----------KK 157
               +  S  +LK   Y   +    A++  S ND +    + I               + 
Sbjct: 112 KMVKKGSSTAHLKSTDY-RFKSLAAAMLIPSGNDAAYVLADAIGAKINPKAVDIQQRMEA 170

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG-ILLRKNFPQYYKYFSIRK 216
           F         K     T   ++SG   K   T  +D   +   LL+K++       S + 
Sbjct: 171 FKKGFQEYLNKHQFLGTSIADSSGYDFKA-KTNIQDLIKVSERLLQKDW--IRDIISSQS 227

Query: 217 FRYR-------NRIITNHNKLLNKMHN-----IDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
           +           +   N N  LN         + G+KTG   N  FN++T L       +
Sbjct: 228 YTITYIYPKKQTQTWYNTNDFLNPNSEFYDKRVKGMKTGSLGN-HFNLITLLEKNKKEYL 286

Query: 265 AVVMGMPTSQERDQKALELIT 285
            +V+   + + R     +LI 
Sbjct: 287 IIVLDSESDKIRYSYTKQLID 307


>gi|319940700|ref|ZP_08015042.1| hypothetical protein HMPREF9464_00261 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805851|gb|EFW02618.1| hypothetical protein HMPREF9464_00261 [Sutterella wadsworthensis
           3_1_45B]
          Length = 395

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/303 (18%), Positives = 116/303 (38%), Gaps = 46/303 (15%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP---ASLTKMMT 85
           ++   + F+ + + ++ S + A    SS+++D+  +Q      D PR P   +S+  +MT
Sbjct: 23  RMHRLLTFILLPLFALPSAVAA----SSVLVDLESSQTILA--DRPRTPENASSMLPLMT 76

Query: 86  LYIIFEYLQSKKLH--LNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
           +Y   E L++  +   L   +   K   +              T    +  L+     D 
Sbjct: 77  VYTTLELLKNGTIKNNLFESV---KNPWS----------GPDITLADLLQGLLMTGDPDA 123

Query: 144 STAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ--ITTARDQAILGILL 201
             A  + +  SEK F+  +++ A  +GM  T +       ++N   I+TA+D A+L   L
Sbjct: 124 VEAVRQTLQLSEKDFSRQLNHTADALGMFATEFTFPC---NENTPCISTAQDMALLAESL 180

Query: 202 RKNFPQYYKYFSIRKFRYR-NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-- 258
             +      + +         +I+   N  L K   I G+   Y      +I ++     
Sbjct: 181 YTHHAISRIWGASHSLTLPDGKILHTENFFLEKSPAITGV---YVSPKREHIASTAAVLS 237

Query: 259 ------KD--DPIVAVVMGMPTSQE-RDQKALELITSFLEKKTLKHQQTHRKDNLSSTSL 309
                       ++AV +        R + +  L+  + + +TLK       D +++  +
Sbjct: 238 ENPKGSDGRLRRLLAVSLNNNDRDSLRQEISSLLLRGYRDYETLKLYS--EGDFVANVPI 295

Query: 310 KKS 312
            K 
Sbjct: 296 YKG 298


>gi|323358343|ref|YP_004224739.1| D-alanyl-D-alanine carboxypeptidase [Microbacterium testaceum
           StLB037]
 gi|323274714|dbj|BAJ74859.1| D-alanyl-D-alanine carboxypeptidase [Microbacterium testaceum
           StLB037]
          Length = 572

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/293 (17%), Positives = 103/293 (35%), Gaps = 30/293 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQ--SKKLHLNTQIPVSKTAA- 111
           ++I ++    +        P   AS+TK++T  ++ + L     +   +     + +A  
Sbjct: 229 AAIALEGVPGE-LSSSASAPESIASITKIVTALVVLDRLPLAPGEQGPSYAFTQADSADY 287

Query: 112 ----TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
                +  S L +      T  Q +  ++  SAN+ +      +  S   FA   +    
Sbjct: 288 WQYRARGESSLDVPVDGSLTELQMLQGMLIASANNYAQRLASDLFPSNADFAAAANAYLA 347

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN-RIITN 226
           + G+      N +G+   N  T A     L      N P   +     +          N
Sbjct: 348 ERGITGITIVNPTGIEAGNTATPAA-LIALAEKALAN-PVIAEIVRTPELTLPGAGSFKN 405

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTS--LRYKDDPI--VAVVMGMPTSQERDQKALE 282
            N LL     + G+KTG      +N++++         +   A V+G P   ER+Q + +
Sbjct: 406 GNPLL-ADPGVVGVKTGTLDA--WNLLSAKDFTIGTVTVRAYAAVLGQPGPDERNQASRD 462

Query: 283 LITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHST 335
           L     E+   +             S+    +I +++  + Q   +   A +T
Sbjct: 463 LYARIAEELQPR------------PSVTSGTVIGRVETLWGQDADVVTTADAT 503


>gi|332654693|ref|ZP_08420436.1| conserved hypothetical protein [Ruminococcaceae bacterium D16]
 gi|332516657|gb|EGJ46263.1| conserved hypothetical protein [Ruminococcaceae bacterium D16]
          Length = 312

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 90/257 (35%), Gaps = 34/257 (13%)

Query: 58  VIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQ 113
           V D+ + +   ++ D      ASL K+       +Y    K+ L   + V++        
Sbjct: 65  VYDIEQEEYLFYEGDSQLPTVASLAKLF----AIDY-ALGKVDLEDIVEVNQEVLELVPV 119

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-----------KKFAILM 162
             S   L    Y T +Q + A++  S ND + A    I+ +E             F   +
Sbjct: 120 GSSLANLYAGEY-TVKQIMEAMLVPSGNDAAYALAYHIAKNELGEGYTATEYIDYFMTEL 178

Query: 163 SNKAKKIGMQNTI-YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-- 219
           S    + G   T  Y + SG     Q  +  D      L   N+    +     +F    
Sbjct: 179 SEYLIEAGYSKTNLYNDPSG--ASMQADSHLDDINRVALKLLNYDFVKECIGKSEFSIQT 236

Query: 220 --RNRIITNHNKLLNKMH-----NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
                   N N+ L++       N+ G+KTG T  S +NIV          +   +   +
Sbjct: 237 PQGEFTWKNTNEFLDENSPYYNANVKGMKTG-TMASSYNIVVLYEKDGKAYLITCLAAHS 295

Query: 273 SQERDQKALELITSFLE 289
           ++ R +     I + +E
Sbjct: 296 NEGRYKAVQSAINTIIE 312


>gi|55821084|ref|YP_139526.1| D-alanyl-D-alanine-carboxypeptidase, penicillin-binding protein,
           truncated [Streptococcus thermophilus LMG 18311]
 gi|55737069|gb|AAV60711.1| D-alanyl-D-alanine-carboxypeptidase, penicillin-binding protein,
           truncated [Streptococcus thermophilus LMG 18311]
          Length = 313

 Score = 88.4 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 75/168 (44%), Gaps = 25/168 (14%)

Query: 137 TRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNASGLH------------ 183
             S+N  +     +++ ++  K+  +M+ K+K++ M NT + NASG              
Sbjct: 4   VLSSNVTTVMLANYLTNNDPDKWLDMMNEKSKELSMTNTKWFNASGAAAVAFKGYYSPQR 63

Query: 184 ---DKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLL---- 231
              +++  TTARD  I+     K +P   KY S     +++          +N  +    
Sbjct: 64  YDNNQSNQTTARDLVIMTYNFIKKYPDILKYTSKPVVAVKEGTPYEETFETYNYSIPGAN 123

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
             +  +DG KTG +    FN + ++++ +  ++A++MG     ++  +
Sbjct: 124 YGLKGVDGSKTGSSPEVAFNYIDTIKHGNQRMIAIIMGSGDWSDQTGE 171


>gi|116630239|ref|YP_815411.1| hypothetical protein LGAS_1684 [Lactobacillus gasseri ATCC 33323]
 gi|116095821|gb|ABJ60973.1| hypothetical protein LGAS_1684 [Lactobacillus gasseri ATCC 33323]
          Length = 446

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 20/167 (11%)

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIIT---NHNKL 230
            +KN S   D     +A D+AI+   L K +PQ      + K  +   + IT   N N +
Sbjct: 25  RFKNKS--KDAENTLSASDRAIIISHLLKKYPQVLNTTKVAKSSFVDGKTITPMQNWNWM 82

Query: 231 LNK------MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ----ERDQKA 280
           L         + +DG+KTG T  +G    ++++     +V VVMG   +      R  + 
Sbjct: 83  LKGLSQYDPNYPVDGLKTGTTDAAGACFASTMKKNGRRLVTVVMGAQHANGEDPSRFIQT 142

Query: 281 LELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
            +L+    +  + K      K   S  S+++  +I   +++   + K
Sbjct: 143 KKLLKYIFDNYSSKK----IKQGFSFASVRRVKVINGKEKSAPVYVK 185


>gi|118354439|ref|XP_001010482.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila]
 gi|89292249|gb|EAR90237.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
           thermophila SB210]
          Length = 869

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 64/149 (42%), Gaps = 15/149 (10%)

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
            +F   M+  A+K+GM+++ + N  GL  K+  +T  D + + + + +  P   +  S +
Sbjct: 282 SRFVKEMNKYAQKLGMRDSQFSNCHGLASKSNRSTCEDLSKVALNIIQT-PYLQQICSTK 340

Query: 216 KFR----------YRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYK---DD 261
            ++           R     N NKLL  + ++  G+KTG T N+G  +    +     + 
Sbjct: 341 NYQCIIYHTIKKDIRKAEWVNTNKLLWDETNSFKGVKTGCTDNAGPCLCVYYKDPINVNI 400

Query: 262 PIVAVVMGMPTSQERDQKALELITSFLEK 290
            ++  V+     + R   +  L     ++
Sbjct: 401 ELIVTVLCCRNPERRFDDSSNLARWAAKQ 429



 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 2/97 (2%)

Query: 58  VIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLH-LNTQIPVSKTAATQNP 115
           V D    Q+   K   E R  ASLTKMMTLY+  +   +  L+  + +I V + AA    
Sbjct: 100 VTDAVSGQLIYSKMSSEVREMASLTKMMTLYVCHQLSTTYNLNAESEEIIVPRIAAYTCG 159

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           +  +L+E      +    AL+  S ND +        
Sbjct: 160 TSAFLRENEKLCLQDLYYALMLPSGNDAAVTLAHHFG 196


>gi|311110174|ref|ZP_07711571.1| ErfK/YbiS/YcfS/YnhG superfamily protein [Lactobacillus gasseri
           MV-22]
 gi|311065328|gb|EFQ45668.1| ErfK/YbiS/YcfS/YnhG superfamily protein [Lactobacillus gasseri
           MV-22]
          Length = 431

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 18/158 (11%)

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIIT---NHNKLLNK------ 233
           D     +A D+AI+   L K +PQ      + K  +   + IT   N N +L        
Sbjct: 17  DAENTLSASDRAIIISHLLKKYPQVLNTTKVAKSSFVDGKTITPMQNWNWMLKGLSQYDP 76

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ----ERDQKALELITSFLE 289
            + +DG+KTG T  +G    ++++     +V VVMG   +      R  +  +L+    +
Sbjct: 77  NYPVDGLKTGTTDAAGACFASTMKKNGRRLVTVVMGAQHANGEDPSRFIQTKKLLKYIFD 136

Query: 290 KKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
             + K      K   S  S+++  +I   +++   + K
Sbjct: 137 NYSSKK----IKQGFSFASVRRVKVINGKEKSAPVYVK 170


>gi|301301062|ref|ZP_07207222.1| putative D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300851332|gb|EFK79056.1| putative D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 257

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 64/137 (46%), Gaps = 19/137 (13%)

Query: 169 IGMQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFSI 214
           +G+++    +A+GL               +     +A+D AI+   L K++P+      +
Sbjct: 1   MGIKDAKLYSANGLPTEYLKSEKYPGASKNSENELSAQDMAIIATKLIKDYPEILNTTKL 60

Query: 215 RKFRYRNR----IITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           +  ++ +R     +TN N+LL +    +DG+KTG +  +G  I  +       I+ V++G
Sbjct: 61  QNVQFNDRGKTTSVTNTNRLLSDNTFQVDGLKTGTSDAAGECITATTSKYGSRIITVIIG 120

Query: 270 MPTSQERDQKALELITS 286
             +  +R ++   L+ +
Sbjct: 121 ANSDSQRFEQTKLLLNN 137


>gi|322374183|ref|ZP_08048716.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C150]
 gi|321276888|gb|EFX53960.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C150]
          Length = 272

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 69/196 (35%), Gaps = 27/196 (13%)

Query: 164 NKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYY 209
            + KK G+ +    NASGL+              D+    + +D AI+   + K +P+  
Sbjct: 3   AQLKKWGITDAKIVNASGLNNSYLGDNIYPGSKSDEENTMSTKDVAIIAQHVIKEYPEIL 62

Query: 210 KYFSIRKFRYRN-RIITNHNKLLNKMH----NIDGIKTGYTRNSGFNIVTSLRYKDDPIV 264
                 + ++     +   N +L         +DG+KTG T  +G   V         I+
Sbjct: 63  DITKKTEAKFDGVNKLKTFNYMLKGQPSYRKGVDGLKTGTTDLAGAAFVAHSNESGMSII 122

Query: 265 AVVMGMP----TSQERDQKALELIT---SFLEKKTL-KHQQTHRKDNLSSTSLKKSLMIK 316
            V++           R     +L+       E KT+ K  Q   K   +    K   +  
Sbjct: 123 TVIINAEHTDTDDYARFTATNDLLNYVVYHWESKTVAKKGQDIDKSQANVLDGKSKQVSA 182

Query: 317 KLKRTYSQFKKIDAKA 332
             K  ++  +KID   
Sbjct: 183 VAKSDFNIIQKIDDDN 198


>gi|55820180|ref|YP_138622.1| D-alanyl-D-alanine carboxypeptidase, truncated [Streptococcus
           thermophilus LMG 18311]
 gi|55736165|gb|AAV59807.1| D-alanyl-D-alanine carboxypeptidase, truncated [Streptococcus
           thermophilus LMG 18311]
          Length = 273

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 72/199 (36%), Gaps = 27/199 (13%)

Query: 161 LMSNKAKKIGMQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFP 206
           +M  + K  G+ +    NASGL+              D+    +A+  A++   + K +P
Sbjct: 1   MMKAQLKDWGITDAKIVNASGLNNSYLGNNIYPGSKSDEENTMSAKGVAVIAQHVIKEYP 60

Query: 207 QYYKYFSIRKFRYRN-RIITNHNKLLNKMH----NIDGIKTGYTRNSGFNIVTSLRYKDD 261
           +        +  +     +   N +L         +DG++TG T  +G + V        
Sbjct: 61  EILDITKKTEANFDGVNKLKTFNYMLKGQPSYRKGVDGLQTGTTDLAGASFVAHSNESGM 120

Query: 262 PIVAVVMGMPTSQERD-------QKALELITSFLEKKTL-KHQQTHRKDNLSSTSLKKSL 313
            I+ V++    +   D        + L  +    E KT+ K  Q   K  +     K   
Sbjct: 121 SIITVIINAEHTDTDDYAWFTATNELLNYVVYHWESKTIAKKGQAISKSQVDVLDGKSKQ 180

Query: 314 MIKKLKRTYSQFKKIDAKA 332
           +    K  ++  +KIDA  
Sbjct: 181 VSAVAKSDFNIIQKIDANN 199


>gi|308233897|ref|ZP_07664634.1| D-alanyl-D-alanine carboxypeptidase [Atopobium vaginae DSM 15829]
 gi|328943375|ref|ZP_08240840.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein
           [Atopobium vaginae DSM 15829]
 gi|327491344|gb|EGF23118.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein
           [Atopobium vaginae DSM 15829]
          Length = 315

 Score = 87.2 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 90/258 (34%), Gaps = 33/258 (12%)

Query: 58  VIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQ 113
           V D+N N    ++        ASL+K+       +Y  S K+ L+     +         
Sbjct: 67  VYDMNANTYLFYEGAGQEPTVASLSKLF----AIDYALS-KVKLDDVFEANDETLKLVPA 121

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-----------KKFAILM 162
             S   L   TY T +Q + A++  S ND +      I   +             F   +
Sbjct: 122 GSSMANLTRGTY-TAKQIMQAMLVPSGNDAAYVMAYNIGKMDLGAGHSAKEYINHFVKSL 180

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY--- 219
                + G   T   + SG   +   T   D   + + L  ++    +      F     
Sbjct: 181 RTYLAREGYGKTDLYDPSGFSMQAT-TNLDDINRVTLKLL-DYDFVKECMGESSFTITTK 238

Query: 220 -RNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
             N    N N+ L+K        I G+KTG T  S +NI+          + + +   ++
Sbjct: 239 QGNFTWKNTNEFLDKESLFYNRYIKGVKTG-TFASSYNIIALYENNGKRYLIICLAAHSN 297

Query: 274 QERDQKALELITSFLEKK 291
           ++R Q     I + +EK+
Sbjct: 298 KDRYQAVQAAINTIIEKR 315


>gi|146620|gb|AAA66340.1| D-alanine carboxypeptidase [Escherichia coli str. K-12 substr.
           W3110]
          Length = 180

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 226 NHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
           N N LL     N+DGIKTG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+
Sbjct: 3   NRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLL 62

Query: 285 TSFL 288
           T   
Sbjct: 63  TWGF 66


>gi|108806608|ref|YP_650524.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Antiqua]
 gi|167399990|ref|ZP_02305508.1| penicillin-binding protein 6 (D-alanyl-D-alaninecarboxypeptidase
           fraction C) (DD-peptidase) (DD-carboxypeptidase) (PBP-6)
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|108778521|gb|ABG12579.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Antiqua]
 gi|167050698|gb|EDR62106.1| penicillin-binding protein 6 (D-alanyl-D-alaninecarboxypeptidase
           fraction C) (DD-peptidase) (DD-carboxypeptidase) (PBP-6)
           [Yersinia pestis biovar Antiqua str. UG05-0454]
          Length = 183

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           L N   N+DG+KTGYT  +G+N+V S       +++VV+G P+ + R  ++ +L+T   
Sbjct: 7   LWNSSLNVDGMKTGYTNGAGYNLVASATDGPMRLISVVLGAPSDKVRFSESEKLLTWGF 65


>gi|288871041|ref|ZP_06116161.2| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
 gi|288865009|gb|EFC97307.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
           13479]
          Length = 119

 Score = 84.5 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S++++D    ++   K +   R  AS TK+MT  I  EY      +L+  +  S+ AA
Sbjct: 45  AQSAVLMDAKTGRILYGKNEGVARPMASTTKIMTCIIALEYG-----NLSDTVTASQNAA 99

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
            Q    L + +   F  E  
Sbjct: 100 AQPKVHLGVYKGQTFRLEDL 119


>gi|303232588|ref|ZP_07319274.1| serine-type D-Ala-D-Ala carboxypeptidase [Atopobium vaginae
           PB189-T1-4]
 gi|302481375|gb|EFL44449.1| serine-type D-Ala-D-Ala carboxypeptidase [Atopobium vaginae
           PB189-T1-4]
          Length = 276

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 89/256 (34%), Gaps = 33/256 (12%)

Query: 59  IDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNP 115
           +D N   +      +    ASL+K+       +Y  S ++ L+     ++          
Sbjct: 31  MDANS-YVYYEGAGQLPTVASLSKLF----AIDYALS-RVKLDDVFEANEETLKLVPAGS 84

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-----------KKFAILMSN 164
           S   L   TY T +Q + A++  S ND +      I   +             F   +S 
Sbjct: 85  SLANLTRGTY-TAKQIMQAMLVPSGNDAAYVMAYNIGKMDLGAGHSAKEYINHFVKSLST 143

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY----R 220
              + G   T   + SG     Q +T  D      L   ++    +      F       
Sbjct: 144 YLAREGYSKTDLFDPSGFS--TQASTNLDDTNRVTLKLLDYDFVKECMGESSFTITTKQG 201

Query: 221 NRIITNHNKLLNK----MHN-IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
           N    N ++ L+K     +  I G+KTG T  S +NI+          +   +   ++++
Sbjct: 202 NFTWKNTSEFLDKESLFYNGHIKGVKTG-TMASSYNIIALYENDGRRYLITCLAAHSNKD 260

Query: 276 RDQKALELITSFLEKK 291
           R Q     I + +EK+
Sbjct: 261 RYQAVQAAINTVIEKR 276


>gi|55822069|ref|YP_140510.1| D-alanyl-D-alanine carboxypeptidase, truncated [Streptococcus
           thermophilus CNRZ1066]
 gi|55738054|gb|AAV61695.1| D-alanyl-D-alanine carboxypeptidase, truncated [Streptococcus
           thermophilus CNRZ1066]
          Length = 131

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 11/119 (9%)

Query: 31  MGKILFLSIIMISMASE----LHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMT 85
           M  +L L  +  + A++      A  K+ +I ++    ++   K    P    S+TK++T
Sbjct: 1   MTFLLCLGSVAPTFAADKKKGFDASAKH-AIAVEATTGKILYEKDATTPTGIGSITKLLT 59

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALITRSA 140
            Y++++ +   +L  NT++ +S        +   S + L  +  +T +Q + A +    
Sbjct: 60  AYMVYKAVDQGELKWNTKVDISDYPFELTVSAGVSNIPLDAR-KYTVKQLLDATLICQC 117


>gi|226330782|ref|ZP_03806300.1| hypothetical protein PROPEN_04703 [Proteus penneri ATCC 35198]
 gi|225201577|gb|EEG83931.1| hypothetical protein PROPEN_04703 [Proteus penneri ATCC 35198]
          Length = 109

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS---FLEKKT 292
           N+DG+KTG+T  +G+N+V+S    D  ++AVV+G P+ + R  ++ +L+     F E  T
Sbjct: 2   NVDGVKTGHTNGAGYNLVSSATEGDMRLIAVVLGAPSDKVRFAESEKLLGWGFRFFETVT 61

Query: 293 LKHQQT 298
                T
Sbjct: 62  PVKAAT 67


>gi|282852868|ref|ZP_06262209.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus gasseri
           224-1]
 gi|282555976|gb|EFB61597.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus gasseri
           224-1]
          Length = 148

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 19/148 (12%)

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIP----VSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           ++K++T+Y+  + + +KKL  N ++     + K +     S + LK    +T +Q   A 
Sbjct: 1   MSKLITIYLTLDAINNKKLSWNQKVKPTKQIVKISNNPEYSGVPLKLNHAYTIKQLYEAT 60

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-TIYKNASGLH----------- 183
           + +SAN  +   G+ ISGS++ F   M N+     +   T     SGL            
Sbjct: 61  LIQSANGPAMLLGQAISGSQQAFVKKMRNQLVSWNIGGATQLLTDSGLPNYTLGEERFKN 120

Query: 184 ---DKNQITTARDQAILGILLRKNFPQY 208
              D     +A D AI+   L KN  +Y
Sbjct: 121 KSKDAENTLSASDMAIIISHLLKNILKY 148


>gi|303233335|ref|ZP_07320005.1| serine-type D-Ala-D-Ala carboxypeptidase [Atopobium vaginae
           PB189-T1-4]
 gi|302480580|gb|EFL43670.1| serine-type D-Ala-D-Ala carboxypeptidase [Atopobium vaginae
           PB189-T1-4]
          Length = 315

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 87/257 (33%), Gaps = 33/257 (12%)

Query: 58  VIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQ 113
           V D++ N    ++        ASL+K+       +Y  S K+ L+     +         
Sbjct: 67  VYDMDANAYLFYEGAGQEPTVASLSKLF----AIDYALS-KVKLDDVFEANDETLKLVPA 121

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-----------KKFAILM 162
             S   L   TY T +Q   A++  S ND +      I   +             F   +
Sbjct: 122 GSSMANLTRGTY-TAKQIFQAMLVPSGNDAAYVMAYNIGKMDLGAGHSAKEYINHFVKSL 180

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY--- 219
                +     T   + SG   +   T   D   + + L  N+    +      F     
Sbjct: 181 RTYLARESYGKTDLYDPSGYSMQAT-TNLDDINRVTLKLL-NYDFVKECMGESSFTITTK 238

Query: 220 -RNRIITNHNKLLNK-----MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTS 273
             N    N N+ L+K       +I G+KTG T  S +NI+          +   +   ++
Sbjct: 239 QGNFTWKNTNEFLDKESLFYNSHIKGVKTG-TMASSYNIIALYENNGKRYLITCLAAHSN 297

Query: 274 QERDQKALELITSFLEK 290
           ++R Q     I + +EK
Sbjct: 298 KDRYQAVQAAIHTIIEK 314


>gi|196232517|ref|ZP_03131369.1| serine-type D-Ala-D-Ala carboxypeptidase [Chthoniobacter flavus
           Ellin428]
 gi|196223279|gb|EDY17797.1| serine-type D-Ala-D-Ala carboxypeptidase [Chthoniobacter flavus
           Ellin428]
          Length = 167

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 31/154 (20%)

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQ---ITTARDQAILGILLRKNFPQYYKYFSIRK-- 216
           M+  A+  GM+NT + N  GL +  +    +TA D A L      N   +  Y S R+  
Sbjct: 1   MNALARTKGMRNTKFLNPHGLDNLERSVPYSTADDLAKLTAYAMANS-AFRFYVSQRERK 59

Query: 217 -----FRYRNR---IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY---------- 258
                F    +   ++ N N+LL  +++IDG+KTG T  +G  ++ S             
Sbjct: 60  ITIFSFSTGGQSAYLLRNTNELLG-INSIDGVKTGTTARAGQCVIISAARTPESRQEGET 118

Query: 259 ---KDDPIVAVVMGMPTSQERDQKALELITSFLE 289
                  +  VV+G      R   A  L+    +
Sbjct: 119 HVITPRRLNVVVLGATN---RFANAQALLARGWQ 149


>gi|145542863|ref|XP_001457118.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124424933|emb|CAK89721.1| unnamed protein product [Paramecium tetraurelia]
          Length = 351

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 61/217 (28%), Positives = 88/217 (40%), Gaps = 29/217 (13%)

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           LTK+M +Y I +  Q  K+ L  Q+P    A +    K  L    YFT EQ + ALI R 
Sbjct: 132 LTKLMAIYTILQLCQDYKIRL--QVPY--YAESVPEPKADLNSYNYFTLEQLLYALILRG 187

Query: 140 ANDVSTAFGEFISG-SEK------------KFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
            ND        +SG SEK            KF  L +  A+++ M NT Y N  GL D N
Sbjct: 188 GNDA---LWSIVSGLSEKLYGITQRNLIKNKFLDLYNRNAQQLKMNNTRYTNLEGLADPN 244

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRKFRYR--------NRIITNHNKLLNKMHNID 238
            +TTA D  +L   L K F  + +    + +  R        + + T  N+    M    
Sbjct: 245 NVTTANDLCLLCDQLLK-FDIFKRILKTKSYTCRATFENGDLSTVYTWKNRQFQFMKKSF 303

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE 275
               G   NSG   +       + +  +++     QE
Sbjct: 304 YGFQGINNNSGPCALLLPEADTNQMFVILLKCNPKQE 340


>gi|213422563|ref|ZP_03355628.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 99

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 45/103 (43%), Gaps = 8/103 (7%)

Query: 58  VIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNT--QIPVSKTAATQN 114
           ++D+N N++      +  R  AS+TK+MT  ++ +     +L L+   ++ +S+T     
Sbjct: 1   MVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDA----RLPLDEILKVDISQTP-EMK 55

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
                ++  +  + +  +L  +  S N  + +   +  G    
Sbjct: 56  GVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNA 98


>gi|289805917|ref|ZP_06536546.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 169

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 11/103 (10%)

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS---FLEK-K 291
           N+DGIKTG+T  +G+N+V S       +++ VMG  T + R+ ++ +L+T    F E   
Sbjct: 3   NVDGIKTGHTSKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLTWGFRFFETVN 62

Query: 292 TLKHQQTHRKD-------NLSSTSLKKSLMIKKLKRTYSQFKK 327
            LK  +    +       + +S  + K + +   +      K 
Sbjct: 63  PLKAGKEFASEPAWFGNTDRASLGVDKDVYLTIPRGRMKDLKA 105


>gi|289808199|ref|ZP_06538828.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 83

 Score = 78.4 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 35/54 (64%)

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
           IDG+KTG+T  +GFN++ S       ++AVVMG  +S+ R+++A +L+    + 
Sbjct: 1   IDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQN 54


>gi|265999457|ref|ZP_06111698.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
           str. 63/9]
 gi|263094079|gb|EEZ18001.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
           str. 63/9]
 gi|326409094|gb|ADZ66159.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella
           melitensis M28]
 gi|326538798|gb|ADZ87013.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis M5-90]
          Length = 188

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF--L 288
           + +   +DGIKTGYT  SG+N+V+S    +  +V VV+G  ++ +RD +  +L+T F  +
Sbjct: 1   MYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQMAKLLTRFGGV 60

Query: 289 EKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTY 322
           +           K    +  LK  ++   +  T 
Sbjct: 61  DNGKAAPLVAMAKPQAVTAKLKPDVVADLIDDTQ 94


>gi|229091483|ref|ZP_04222693.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-42]
 gi|228691857|gb|EEL45604.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus Rock3-42]
          Length = 196

 Score = 77.6 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 2/101 (1%)

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLE 289
           L+ +   +DG+KTG T  +G     +       +++VV+   +   R  +  +L      
Sbjct: 5   LIKQYEGVDGLKTGTTPEAGDCFTGTAERNGMRLISVVIKANSHAARFDETKKLYDYGFA 64

Query: 290 KKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
               + ++ + KD++ +      +   K K    Q K+  +
Sbjct: 65  N--FEMKKVYGKDSVVNGHETVRVANAKDKDVVVQTKQAVS 103


>gi|228979141|ref|ZP_04139487.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
 gi|228780589|gb|EEM28810.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
          Length = 129

 Score = 77.6 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 9/111 (8%)

Query: 23  YIQRNIQLMGKILFLSIIMISM-----ASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRY 76
           ++++   L+      ++I++          + AK   S+I+I+ N  ++   K +E P  
Sbjct: 3   FLKKFAILLLSFFITALIVLYFYLYVNGPIIQAK---SAILINANSGEIVYKKNEETPVQ 59

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
            A+L+K+MT YI+ E L  +K+ L+  + +S        S + +      T
Sbjct: 60  SATLSKLMTEYIVLEQLNDRKIQLDDFVQISNEVFRVETSPIQVTSNDKTT 110


>gi|255024934|ref|ZP_05296920.1| beta-lactamase [Listeria monocytogenes FSL J1-208]
          Length = 135

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 1/100 (1%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++ V  V        +  +   P ASL+K+MT +++ E + + +L  +  + + +     
Sbjct: 33  AAAVYSVENGNPLYEQNADKVMPIASLSKLMTAFLVLEAVDNNELAWDETLDLVRLDDPS 92

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             S   + +K  ++      A++T SAND +   G+ + G
Sbjct: 93  AVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLGDRLDG 132


>gi|213421722|ref|ZP_03354788.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 151

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 8/107 (7%)

Query: 187 QITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIIT--NHNKLLNKM-HNIDG 239
            ++TARD   L ++  K +P   +  + R+    F +    +   N N L+ +   NI  
Sbjct: 7   NVSTARDLTKL-LIATKQYPLIGQLSTTREDMATFSHPAYTLPFRNTNHLVYRDNWNIQL 65

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITS 286
            KTG+T  +G  +V      + P+  VVM           A  L T 
Sbjct: 66  TKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 112


>gi|113477326|ref|YP_723387.1| beta-lactamase [Trichodesmium erythraeum IMS101]
 gi|110168374|gb|ABG52914.1| beta-lactamase [Trichodesmium erythraeum IMS101]
          Length = 468

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 98/255 (38%), Gaps = 31/255 (12%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIF-EYLQSKKLHLNTQIPVSKTAATQNPS 116
           +ID +         D     AS  K+  + + F + +   ++ LN  + + ++   +   
Sbjct: 233 LIDTDTGAYVDINGDATMAAASTIKL-PILVAFFQAVDQGRIKLNDLLTMKESHVAEGSG 291

Query: 117 KL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
            + +    + +T  Q +  +I  S N  +    E + G     A +++   +  G++NT+
Sbjct: 292 NMQFRNPGSKYTALQTVRKMIIISDNTATNMLIEELGG-----AEILNQSFQSWGLKNTV 346

Query: 176 YKNASGLHD--KNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIITNHNK 229
             N+  L D      TT++D   L   + +         S++     FR   R   N   
Sbjct: 347 INNS--LPDLSGTNTTTSKDLINLISQINQ-----GGLVSLKSRDRLFRIMERTQNNS-- 397

Query: 230 LLNKMHN---IDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVMGMPTSQERDQKALELIT 285
           LL +      +   KTG    S    V  +        +  V+      + DQ A++LI 
Sbjct: 398 LLPRGVGRGSVVAHKTGN-LKSMLADVGMIDLVNGRRYLLAVL--VKRPDEDQDAVDLIR 454

Query: 286 SFLEKKTLKHQQTHR 300
             + K+T K+ ++ +
Sbjct: 455 R-VSKETYKYLKSSQ 468


>gi|160879346|ref|YP_001558314.1| peptidoglycan binding domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160428012|gb|ABX41575.1| Peptidoglycan-binding domain 1 protein [Clostridium phytofermentans
           ISDg]
          Length = 667

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 73/196 (37%), Gaps = 41/196 (20%)

Query: 56  SIVIDVNKNQMTGFK-----------QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           ++++D+  +++ G              D          +M +             L   +
Sbjct: 103 AMLVDMTASELLGGSFLSSRSNFSGFND----------LMFILTTLREA-----PLTDIV 147

Query: 105 PVSKTAATQNPSKLY-LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            VSK AA+     ++  KE    +    +L      + D   A  + I+G++  F  +M+
Sbjct: 148 TVSKRAASLKGENIFGFKEGDKISLNDLLLCFYFTGSEDARLAIVDHIAGNDTTFIAMMN 207

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI 223
           + A+ IG+ NT Y N +G ++K+Q T   D   +   L                 +   +
Sbjct: 208 SVARNIGLINTNYSNINGDYNKSQRTMLYDIYSIVYELFNE-------------DFMKEV 254

Query: 224 ITNHNKLLNKMHNIDG 239
           +T  NKL     N +G
Sbjct: 255 LT-ENKLFITYENSNG 269


>gi|76799308|ref|ZP_00781473.1| DD-carboxypeptidase [Streptococcus agalactiae 18RS21]
 gi|76585335|gb|EAO61928.1| DD-carboxypeptidase [Streptococcus agalactiae 18RS21]
          Length = 199

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 9/105 (8%)

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKF-----RYRNRIITNHNKLLNK----M 234
           +   +TTARD +IL     K +P    Y    +             T +N         +
Sbjct: 1   NATNVTTARDLSILTYHFLKKYPDILNYTKYPEVKAMVGTPYEETFTTYNYSTPGAKFGL 60

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
             +DG+KTG + ++ FN + + + ++  ++ VV+G+    ++D +
Sbjct: 61  EGVDGLKTGSSPSAAFNALVTAKRQNTRLITVVLGVGDWSDQDGE 105


>gi|255017615|ref|ZP_05289741.1| hypothetical protein LmonF_07370 [Listeria monocytogenes FSL
           F2-515]
          Length = 77

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 202 RKNFPQYYKYFSIRKFRY-RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD 260
               P+  +  S       +   + + N  L  +  +DG+KTG+T  +G+  + +     
Sbjct: 1   MSTHPEVLETTSKPTVTTDKGAKLESTNDSLGSIQGLDGLKTGFTDEAGYCFIGTAERGG 60

Query: 261 DPIVAVVMGMPTSQ 274
             ++++V+   T++
Sbjct: 61  KRVISIVLDAGTAE 74


>gi|226323179|ref|ZP_03798697.1| hypothetical protein COPCOM_00951 [Coprococcus comes ATCC 27758]
 gi|225208369|gb|EEG90723.1| hypothetical protein COPCOM_00951 [Coprococcus comes ATCC 27758]
          Length = 196

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 6/73 (8%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S+ ++D +  ++   K++    P AS TK+MT  +  E    K L     +  S  A 
Sbjct: 112 ARSAALVDADSGRVLLGKEEHVMRPMASTTKIMTCILALEKGNPKDL-----VTASANAV 166

Query: 112 TQNPSKLYLKEKT 124
            Q    L + E  
Sbjct: 167 AQPKVHLGMHEGE 179


>gi|218460577|ref|ZP_03500668.1| putative D-alanyl-D-alanine carboxypeptidase (penicillin-binding
           protein) [Rhizobium etli Kim 5]
          Length = 219

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 38/56 (67%)

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           +DGIKTGYT  SGFN+V+++R  +  +V VV+G  T++ RD K   L+  +L + +
Sbjct: 1   MDGIKTGYTNASGFNLVSAVRDGNRRVVGVVLGGRTARSRDAKMAALLDRYLGRAS 56


>gi|257059487|ref|YP_003137375.1| beta-lactamase [Cyanothece sp. PCC 8802]
 gi|256589653|gb|ACV00540.1| beta-lactamase [Cyanothece sp. PCC 8802]
          Length = 425

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 88/269 (32%), Gaps = 41/269 (15%)

Query: 49  HAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIF-EYLQSKKLHLNTQIPVS 107
           +AK K  +  +D++           P   AS  K+  + + F E L + K+HL+  + + 
Sbjct: 160 YAKLKPQAWFMDLDNGAYVSVNGSVPVPAASTIKI-PVLVAFFEALDAGKIHLDEILTMD 218

Query: 108 KTAATQNPSKLYLK-EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
           K   T     +  K   T FT  +    +I  S N  +      + G E      ++ + 
Sbjct: 219 KAIITSGAGNMQYKPPGTKFTALETATQMIVISDNTATDMLIRRLGGKEA-----LNARF 273

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
           +  GM NT+  N     +    TT  D + L   +                R     + +
Sbjct: 274 RDWGMTNTVINNRLPDLEGTNTTTPEDLSKLLARIE---------------RGEVLTLRS 318

Query: 227 HNKLLNKMHN---------------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
            ++LL  M                 I   KTG   +   +            +  V    
Sbjct: 319 RDRLLGIMQETRTRTLLPQGLEKDAIISHKTGDIGSIIGDAGIIDIPNGKRYIGAVF--- 375

Query: 272 TSQERDQKALELITSFLEKKTLKHQQTHR 300
           TS+  +      +     + T +H + ++
Sbjct: 376 TSRPYNDPMGRALIQDFSRTTYQHFKWYQ 404


>gi|17987197|ref|NP_539831.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase
           fraction C) [Brucella melitensis bv. 1 str. 16M]
 gi|17982867|gb|AAL52095.1| penicillin-binding protein 6 (d-alanyl-d-alanine carboxypeptidase
           fraction c) [Brucella melitensis bv. 1 str. 16M]
          Length = 182

 Score = 73.0 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF--LEKKTLK 294
           +DGIKTGYT  SG+N+V+S    +  +V VV+G  ++ +RD +  +L+T F  ++     
Sbjct: 1   MDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQMAKLLTRFGGVDNGKAA 60

Query: 295 HQQTHRKDNLSSTSLKKSLMIKKLKRTY 322
                 K    +  LK  ++   +  T 
Sbjct: 61  PLVAMAKPQAVTAKLKPDVVADLIDDTQ 88


>gi|170077878|ref|YP_001734516.1| beta-lactamase, putative [Synechococcus sp. PCC 7002]
 gi|169885547|gb|ACA99260.1| beta-lactamase, putative [Synechococcus sp. PCC 7002]
          Length = 387

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 58/141 (41%), Gaps = 8/141 (5%)

Query: 59  IDVNKNQMTGFKQDEPRYPASLTKMMTLYIIF-EYLQSKKLHLNTQIPVSKTAATQNPSK 117
           +D++  +      D P   AS  K+  + + F E + S K++L+  + +++         
Sbjct: 134 VDLDTGEYLDVAGDRPLSAASTIKI-PILVAFFEAVDSGKVNLDDSLTLTQEVIGGGSGG 192

Query: 118 LYLK-EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
           +  K   + +T       +   S N  +    E + G+      +++ K ++ GM  T  
Sbjct: 193 MQYKTPGSTYTALYTATEMSVNSDNTATNMITELLGGN-----AVLNAKFQQWGMTQTQL 247

Query: 177 KNASGLHDKNQITTARDQAIL 197
            N     +   +T+A+D A L
Sbjct: 248 NNPLPDLEGTNLTSAKDLAHL 268


>gi|153827672|ref|ZP_01980339.1| penicillin-binding protein 6 [Vibrio cholerae MZO-2]
 gi|149737857|gb|EDM52762.1| penicillin-binding protein 6 [Vibrio cholerae MZO-2]
          Length = 161

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 46/101 (45%), Gaps = 12/101 (11%)

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKK-------- 291
           +KTGYT  +G+++ +S    +  +++VVMG  + + R+ ++ +L++              
Sbjct: 1   MKTGYTSGAGYSLASSATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQK 60

Query: 292 --TLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
              +++Q+    D           +   L R  S  KK++A
Sbjct: 61  DSVIQNQRLWYGDKNEVALGSADTVYLTLPR--SDVKKLNA 99


>gi|213024102|ref|ZP_03338549.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella
          enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 77

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 26 RNIQLMGKILFLSIIMISMASELHAKP---KYSSIVIDVNKNQMTGF-KQDEPRYPASLT 81
          R++     +LFL    +    +  A P     + I++D    ++      DE   PASLT
Sbjct: 9  RSLAAGSVLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLT 68

Query: 82 KMMTLYII 89
          K+MT Y++
Sbjct: 69 KIMTSYVV 76


>gi|218246445|ref|YP_002371816.1| beta-lactamase [Cyanothece sp. PCC 8801]
 gi|218166923|gb|ACK65660.1| beta-lactamase [Cyanothece sp. PCC 8801]
          Length = 425

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 88/269 (32%), Gaps = 41/269 (15%)

Query: 49  HAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIF-EYLQSKKLHLNTQIPVS 107
           +AK K  +  +D++           P   AS  K+  + + F E L + K+HL+  + + 
Sbjct: 160 YAKLKPQAWFMDLDNGAYVSVNGSVPVPAASTIKI-PVLVAFFEALDAGKIHLDEILIMD 218

Query: 108 KTAATQNPSKLYLK-EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
           K   T     +  K   T FT  +    +I  S N  +      + G E      ++ + 
Sbjct: 219 KAIITSGAGNMQYKPPGTKFTALETATQMIVISDNTATDMLIRRLGGKEA-----LNARF 273

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
           +  GM NT+  N     +    TT  D + L   +                R     + +
Sbjct: 274 RDWGMTNTVINNRLPDLEGTNTTTPEDLSKLLARIE---------------RGEVLTLRS 318

Query: 227 HNKLLNKMHN---------------IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
            ++LL  M                 I   KTG   +   +            +  V    
Sbjct: 319 RDRLLGIMQETRTRTLLPQGLEKDAIISHKTGDIGSIIGDAGIIDIPNGKRYIGAVF--- 375

Query: 272 TSQERDQKALELITSFLEKKTLKHQQTHR 300
           TS+  +      +     + T +H + ++
Sbjct: 376 TSRPYNDPMGRALIQDFSRTTYQHFKWYQ 404


>gi|93007306|gb|ABE97154.1| putative D-alanyl-D-alanine carboxypeptidase [Pasteuria ramosa]
          Length = 179

 Score = 71.1 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 32/58 (55%)

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
             +DG+KTG+T N+GF I ++ +  +  ++AVVMG P+S+ R+     +         
Sbjct: 1   KGVDGLKTGFTGNAGFCISSTAKRDNLRVIAVVMGEPSSKVRNADIAAMFDYTFANYK 58


>gi|67923291|ref|ZP_00516775.1| similar to Beta-lactamase class A [Crocosphaera watsonii WH 8501]
 gi|67854867|gb|EAM50142.1| similar to Beta-lactamase class A [Crocosphaera watsonii WH 8501]
          Length = 410

 Score = 70.7 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 61/147 (41%), Gaps = 8/147 (5%)

Query: 59  IDVNKNQMTGFKQDEPRYPASLTKMMTLYIIF-EYLQSKKLHLNTQIPVSKTA-ATQNPS 116
           ID++      +   +P   AS  K+  + + F E +    +HL+  + ++K    + +  
Sbjct: 168 IDLDNGSYVTYNGTQPVPAASTIKI-PVLVAFFEEVDKGNIHLDQMLTMTKDVMVSGSGD 226

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
             Y+     FT  +    +I  S N  +    + + G E     +++ + K+ GM+NT  
Sbjct: 227 MQYMGINKKFTALEVARKMIVISDNTATEMLVKQMGGKE-----VLNKRFKEWGMKNTEI 281

Query: 177 KNASGLHDKNQITTARDQAILGILLRK 203
            N     +    T++ D + L   + +
Sbjct: 282 NNILPELEGTNKTSSEDLSKLLARIER 308


>gi|329769995|ref|ZP_08261391.1| hypothetical protein HMPREF0433_01155 [Gemella sanguinis M325]
 gi|328837513|gb|EGF87141.1| hypothetical protein HMPREF0433_01155 [Gemella sanguinis M325]
          Length = 399

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 103/259 (39%), Gaps = 23/259 (8%)

Query: 53  KYSSIVI-DVNKNQMTGFKQDEPRYPASLTKM---MTLYIIFEYLQSKKLHLNTQIPVSK 108
             SSIVI + N  ++   + +  +   S+ K+   + LY++ + L++KK  L+ +I ++K
Sbjct: 39  ANSSIVISEYNTGKIISKRGENEKV--SVNKLPNYLALYLLTDDLKNKKTSLDDKITINK 96

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                      +  K   T E  +   I    N+ S++  E I           ++    
Sbjct: 97  GD--------DVLSKYQITKELTVKDAIFLLENENSSSLLEAIFTKYNVDVEKANSILGA 148

Query: 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
           + + NT  +N    +  +  ++A+D   L  ++ KN+P+  +     ++   +     ++
Sbjct: 149 MSLNNTKLENLE--NSDSNTSSAKDITFLNSVILKNYPELTEITKNPEYTLSSDEKVTNS 206

Query: 229 KLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD----QKALELI 284
               +      +   Y   SG N VT     +  ++  V+     +++     QK  E +
Sbjct: 207 VTFKESEKFRVLGLDY---SGKNSVTYAYSGNTKLLVTVLNQSDDKDKFFEKLQKTYEYL 263

Query: 285 TSFLEKKTLKHQQTHRKDN 303
            S  + K      T+  +N
Sbjct: 264 FSNYQYKLALKAGTYTINN 282


>gi|254416694|ref|ZP_05030444.1| beta-lactamase, putative [Microcoleus chthonoplastes PCC 7420]
 gi|196176434|gb|EDX71448.1| beta-lactamase, putative [Microcoleus chthonoplastes PCC 7420]
          Length = 526

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 58  VIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYII--FEYLQSKKLHLNTQIPVSKTAATQN 114
           V+D++        Q    +PA S  K+    ++  F+ + + K+ L+  + +      + 
Sbjct: 262 VVDLDTGAYL-DWQSHSIFPAASTIKV--AILVAFFQEVDAGKIRLDEPLTMEPEMIAKG 318

Query: 115 PSKL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
              + Y K  T ++  +    +IT S N  +      + G        ++ +    G+  
Sbjct: 319 SGDMQYQKPGTQYSALEVATKMITISDNTATNMIIHRLGG-----IQAVNQRFISWGLTA 373

Query: 174 TIYKNASGLHDKNQITTARDQAIL 197
           T   N     +    T ARD A L
Sbjct: 374 TAINNPLPDLEGTNTTNARDMANL 397


>gi|169839591|ref|ZP_02872779.1| Serine-type D-Ala-D-Ala carboxypeptidase [candidate division TM7
           single-cell isolate TM7a]
          Length = 61

 Score = 69.9 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 35/55 (63%)

Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
           +T+ N LL  +  +DG+KTGY   +G NIV +    DD ++AV++G   +++R+ 
Sbjct: 1   MTSTNTLLGNVQGVDGLKTGYHDAAGSNIVLTANRGDDRMIAVILGSNHAKDRNA 55


>gi|325473430|gb|EGC76625.1| hypothetical protein HMPREF9353_02420 [Treponema denticola F0402]
          Length = 188

 Score = 69.9 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 227 HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ------ERDQKA 280
            N LL K+   DG+KTG+   SGFNI  + +   +  +AV++G           +R+Q +
Sbjct: 5   TNTLLKKIEGCDGLKTGFIYESGFNISLTAQKNGERFIAVILGGHGKNFTEGIFKREQNS 64

Query: 281 LELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIK 316
           ++L+    +       + H K   S + L  +L +K
Sbjct: 65  IKLMNFAFDNFKSFDIREHNKIKKSVSVLGSNLNVK 100


>gi|289549536|ref|YP_003470440.1| D-alanyl-D-alanine carboxypeptidase/Penicillin binding protein PBP4
           [Staphylococcus lugdunensis HKU09-01]
 gi|289179068|gb|ADC86313.1| D-alanyl-D-alanine carboxypeptidase/Penicillin binding protein PBP4
           [Staphylococcus lugdunensis HKU09-01]
          Length = 125

 Score = 69.5 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 20/124 (16%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSS---------------IVIDVNKNQMTG-F 69
           R I+    +L L ++   + +     P   +               +++   + Q+   +
Sbjct: 2   RQIKGFVLLLCLCMMFSPLTTYAAKTPTQIAEAEKQHIAQHYNPKSMIVTTQQGQILYDY 61

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKLYLKEKTY 125
            Q +   PAS+TK+MT+Y++ + +   K+ L  ++ VS   A        +   L +   
Sbjct: 62  HQHDNVDPASITKLMTIYLVLDDIDKGKIKLTDEVKVSGRYAKMSRIPGLTTFPLIKGKT 121

Query: 126 FTTE 129
           +T +
Sbjct: 122 YTIK 125


>gi|307151215|ref|YP_003886599.1| beta-lactamase [Cyanothece sp. PCC 7822]
 gi|306981443|gb|ADN13324.1| beta-lactamase [Cyanothece sp. PCC 7822]
          Length = 472

 Score = 69.5 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 79/218 (36%), Gaps = 14/218 (6%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +  +D++           P   AS  K+  L  + E + + K+ L+ Q+ ++K   T   
Sbjct: 171 AFFVDMDNGNYVDINAQAPIPAASTIKIFVLVALLEQIDAGKVRLDEQLTMTKDIVTSGS 230

Query: 116 SKLYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
             +  +     FT  +    +I  S N  +    + + G       +++ + ++ G+ NT
Sbjct: 231 GDMQYQPVGKKFTVLETATKMIIISDNTATDMLVKRLGGK-----QVLNQRFREWGLTNT 285

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
           I  N     +    T+ RD A +  L+R N  +     S  +        T    LL + 
Sbjct: 286 IINNILPDLEGTNTTSPRDLAYI--LMRVNQGELLSLKSRDRM-LNIMQQTKTRTLLPQG 342

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRY----KDDPIVAVVM 268
            + D I    T + G  ++              +  VM
Sbjct: 343 LDSDAIIAHKTGDIG-TVLGDAGIIDMPNGKRYIGAVM 379


>gi|33322432|gb|AAQ06942.1|AF496271_1 d-alanyl-D-alanine carboxypeptidase precursor [Lactobacillus
           delbrueckii subsp. lactis]
          Length = 130

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 14/118 (11%)

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
           ++K +     S + L     +T +    A +  SAN  +    + +SG +  F   M   
Sbjct: 13  IAKISQNTEYSNVPLTSSRAYTIKDLYRATLIESANGAAMTLAQAVSGDQVTFVKKMRKL 72

Query: 166 AKKIGMQNTIYKNASGLHDKN--------------QITTARDQAILGILLRKNFPQYY 209
               G+++    NA GL + N                 +A D AI+   L K+FP+  
Sbjct: 73  LTSWGIKDAKIYNACGLANGNLGSAAYPGVGKDVENEMSATDMAIVCQKLLKDFPEVL 130


>gi|213418400|ref|ZP_03351466.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 109

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 12/89 (13%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMA-----------SELHAKPKYSSIVIDVNK 63
           +     + +  R +Q M     L    IS A             +      S I+ID N 
Sbjct: 21  VVQTMKTTFSARFMQRMALTTALCATFISTAHADDLNIKTMIPGVPQIDAESYILIDYNS 80

Query: 64  NQMTGFKQ-DEPRYPASLTKMMTLYIIFE 91
            ++   +  DE R PASLTKMMT Y+I +
Sbjct: 81  GKVLAEQNADERRDPASLTKMMTSYVIGQ 109


>gi|284054899|ref|ZP_06385109.1| beta-lactamase [Arthrospira platensis str. Paraca]
          Length = 501

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 99/277 (35%), Gaps = 40/277 (14%)

Query: 46  SELHAKPKYSSIVI--DVNKNQMTGFKQDEPRYPASLTKMMTLYIIF-EYLQSKKLHLNT 102
           S     P  S  ++  D+N     G ++      AS  K+  + + F + + + ++ L+ 
Sbjct: 241 SVAATSPDVSPALMFLDLNTGGYVGLREQSIVPAASTIKV-PILVAFFQAVDAGEIRLDE 299

Query: 103 QIPVSKT-AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
            + +++     +     Y    T +T  +    ++T S N  +    + + G    F  +
Sbjct: 300 MLVMTENHQVGEAGIMQYQPPGTEYTALETATKMMTISDNTATNMIIDRLGG----F-QV 354

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           ++ + +  G+ +T+ +N     +    TT RD   L       F Q ++   +     R+
Sbjct: 355 LNQRFRSWGLTDTMARNPLPDIEGTNKTTPRDMVNL-------FSQIHQ-GGLLSMTSRD 406

Query: 222 RII-----TNHNKLLNKMHNIDGI---KTGYTRNSGFNIVTSLRY------KDDPIVAVV 267
           R++     T +N LL        +   KTG         +                +  +
Sbjct: 407 RLLRIMTETENNHLLPSGVGNGAVVAHKTGTLN------IMLADVGIVDMPNGKRYILAI 460

Query: 268 MGMPTSQERDQKAL--ELITSFLEKKTLKHQQTHRKD 302
           +   T+  +  +++  ++     E    K  +T   +
Sbjct: 461 LAERTNGNQAAESMIQKMSRQVYEYMLAKTSETVTPE 497


>gi|126659507|ref|ZP_01730640.1| hypothetical protein CY0110_07269 [Cyanothece sp. CCY0110]
 gi|126619241|gb|EAZ89977.1| hypothetical protein CY0110_07269 [Cyanothece sp. CCY0110]
          Length = 422

 Score = 69.1 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 62/147 (42%), Gaps = 8/147 (5%)

Query: 59  IDVNKNQMTGFKQDEPRYPASLTKMMTLYII-FEYLQSKKLHLNTQIPVSKTA-ATQNPS 116
           ID++      +   +P   AS  K+  + +  F+ +    +HL+  + ++K    + +  
Sbjct: 158 IDLDNGAYVTYNGTQPIPAASTIKI-PVLVAFFQEVDKGNMHLDQMLTMTKDVMVSGSGD 216

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
             Y++E   F   +    +I  S N  +    + I G E     +++ + K+ GM++T  
Sbjct: 217 MQYMQENKKFPAIEVATKMIIISDNTATEMLVKQIGGKE-----VLNQRFKEWGMKHTEI 271

Query: 177 KNASGLHDKNQITTARDQAILGILLRK 203
            N     +    T++ D A L   + +
Sbjct: 272 HNILPDLEGTNKTSSEDLAKLLARIER 298


>gi|291566346|dbj|BAI88618.1| probable beta-lactamase [Arthrospira platensis NIES-39]
          Length = 498

 Score = 69.1 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 99/277 (35%), Gaps = 40/277 (14%)

Query: 46  SELHAKPKYSSIVI--DVNKNQMTGFKQDEPRYPASLTKMMTLYIIF-EYLQSKKLHLNT 102
           S     P  S  ++  D+N     G ++      AS  K+  + + F + + + ++ L+ 
Sbjct: 238 SVAATSPDVSPALMFLDLNTGGYVGLREQSIVPAASTIKV-PILVAFFQAVDAGEIRLDE 296

Query: 103 QIPVSKT-AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
            + +++     +     Y    T +T  +    ++T S N  +    + + G    F  +
Sbjct: 297 MLVMTENHQVGEAGIMQYQPPGTEYTALETATKMMTISDNTATNMIIDRLGG----F-QV 351

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
           ++ + +  G+ +T+ +N     +    TT RD   L       F Q ++   +     R+
Sbjct: 352 LNQRFRSWGLTDTMARNPLPDIEGTNKTTPRDMVNL-------FSQIHQ-GGLLSMTSRD 403

Query: 222 RII-----TNHNKLLNKMHNIDGI---KTGYTRNSGFNIVTSLRY------KDDPIVAVV 267
           R++     T +N LL        +   KTG         +                +  +
Sbjct: 404 RLLRIMTETENNHLLPSGVGNGAVVAHKTGTLN------IMLADVGIVDMPNGKRYILAI 457

Query: 268 MGMPTSQERDQKAL--ELITSFLEKKTLKHQQTHRKD 302
           +   T+  +  +++  ++     E    K  +T   +
Sbjct: 458 LAERTNGNQAAESMIQKMSRQVYEYMLAKTSETVTPE 494


>gi|307307760|ref|ZP_07587489.1| putative beta-lactamase precursor protein [Sinorhizobium meliloti
           BL225C]
 gi|307317420|ref|ZP_07596860.1| putative beta-lactamase precursor protein [Sinorhizobium meliloti
           AK83]
 gi|306897009|gb|EFN27755.1| putative beta-lactamase precursor protein [Sinorhizobium meliloti
           AK83]
 gi|306901626|gb|EFN32228.1| putative beta-lactamase precursor protein [Sinorhizobium meliloti
           BL225C]
          Length = 287

 Score = 69.1 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 59/172 (34%), Gaps = 21/172 (12%)

Query: 44  MASELHAKPKYSSIVI-DVNKNQMTGFKQDEPRYPASLTK--MMTLYIIFEYLQSKKLHL 100
           +A    A+P  +  V+ ++   +      DE    AS  K  +M      + +   +L L
Sbjct: 14  LAHICDAQPFVTRFVVRNLKTGETIERGADEETPSASTRKTSIMMA--ALKAVHEGRLDL 71

Query: 101 NTQIPVSKTAATQNPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
           +  I      A +  S ++  L      +    I  ++  S N  +    E ++      
Sbjct: 72  DEPITYEARFAEEVASGMFRYLTPGIVISLRDAITGMMVLSDNVCTKMVFERLT------ 125

Query: 159 AILMSNKAKKIGMQNTIYK--------NASGLHDKNQITTARDQAILGILLR 202
              + +  K IGM  T ++                   TTARDQA L   + 
Sbjct: 126 LEEVDSYCKSIGMHGTHHRFLIPPLALPPDHSLTSVTTTTARDQAFLLQTIL 177


>gi|5305924|gb|AAD41880.1|AF153050_1 putative carboxypeptidase [Enterococcus faecium]
          Length = 111

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 12/107 (11%)

Query: 189 TTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNKM-----HNID 238
           TTA D AI+     +N P   +  +      +    R     N N+LL+         + 
Sbjct: 2   TTAYDLAIIAKACLEN-PIISEIVASNTSYEKWPNGREVTYNNSNELLDPNSPYYRPEVI 60

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
           G+KTG +   G  +V++     +  + V MG  T + R Q +++++ 
Sbjct: 61  GLKTGTSSLGGACVVSAAVIDGETYICVAMGS-TKESRFQDSVDILD 106


>gi|218660191|ref|ZP_03516121.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli IE4771]
          Length = 83

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + +I+ +   +   K  D+   PASL K+MT+ ++F+ +   ++ L+T+ PVS+ A    
Sbjct: 24  AYMIEASTGTVLLAKNEDQGFSPASLAKLMTMNLVFDAVTKGQITLDTEYPVSEYAWRTG 83


>gi|222831972|gb|EEE70449.1| predicted protein [Populus trichocarpa]
          Length = 155

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTH 299
           +KTGY  +SGFN+V +    +  + AVV+G  +  +R + A +L+T   E + L      
Sbjct: 1   MKTGYICSSGFNLVATATRGERTLAAVVLGAQSQVQRAEIAADLLTRGFETQGLGAPSIV 60


>gi|186682820|ref|YP_001866016.1| beta-lactamase [Nostoc punctiforme PCC 73102]
 gi|186465272|gb|ACC81073.1| beta-lactamase [Nostoc punctiforme PCC 73102]
          Length = 340

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 60/149 (40%), Gaps = 10/149 (6%)

Query: 59  IDVNKNQMTGFKQDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           +D+       F  D+    AS  K  ++     F+ + + K+ L   + + +   T    
Sbjct: 101 MDLKTGDYFSFNGDKAFSAASTIKYPILIAL--FQEIDAGKIKLGEALVMRRKHVTGGSG 158

Query: 117 KL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
            L Y +  T  +  Q    ++T S N  +    + + G        ++ K ++ G+Q+T+
Sbjct: 159 DLQYQRVGTKLSLLQTATKMMTISDNTATNMIIDRLGG-----VSKLNQKFRRWGLQSTV 213

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKN 204
             N  G       T+A+D   L  L+ KN
Sbjct: 214 IHNMLGDFKGTNKTSAKDLVRLSALVTKN 242


>gi|209527557|ref|ZP_03276058.1| beta-lactamase [Arthrospira maxima CS-328]
 gi|209491980|gb|EDZ92334.1| beta-lactamase [Arthrospira maxima CS-328]
          Length = 493

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 88/252 (34%), Gaps = 38/252 (15%)

Query: 48  LHAKPKYSSIVI--DVNKNQMTGFKQDEPRYPASLTKMMTLYIIF-EYLQSKKLHLNTQI 104
             A P  +  ++  D+N     G ++      AS  K+  + + F + + + ++ L+  +
Sbjct: 240 AAASPDITPALMFLDLNTGGYVGLREQSKVPAASTIKV-PILVAFFQAVDAGEIRLDEML 298

Query: 105 PVSKT-AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            +++     +     Y    T +T       ++T S N  +    E + G    F  +++
Sbjct: 299 VMTENHQVGEAGIMQYQPPGTEYTALATATKMMTISDNTATNMIIERLGG----F-QVLN 353

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI 223
            K +  G+ +T+ +N     +    TT RD   L   +            +     R+R+
Sbjct: 354 QKFRSWGLTDTLVRNPLPDIEGTNQTTPRDMVSLLSQI--------HQGGLLSMTSRDRL 405

Query: 224 I-----TNHNKLLN---KMHNIDGIKTGYTRNSGFNIVTSLRY------KDDPIVAVVMG 269
           +     T +N LL        +   KTG         +                +  ++ 
Sbjct: 406 LRIMTETENNHLLPSGVSNGAVVAHKTGTLN------IMLADVGIVDMPNGKRYILAILA 459

Query: 270 MPTSQERDQKAL 281
              + ++  +++
Sbjct: 460 QRNNGDQAAESM 471


>gi|172037901|ref|YP_001804402.1| hypothetical protein cce_2988 [Cyanothece sp. ATCC 51142]
 gi|171699355|gb|ACB52336.1| hypothetical protein cce_2988 [Cyanothece sp. ATCC 51142]
          Length = 413

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 61/147 (41%), Gaps = 8/147 (5%)

Query: 59  IDVNKNQMTGFKQDEPRYPASLTKMMTLYII-FEYLQSKKLHLNTQIPVSKTA-ATQNPS 116
           +D++      +   +P   AS  K+  + +  F+ +    +HL+  + ++K    + +  
Sbjct: 163 MDLDNGAYVTYNGTQPVPAASTIKI-PVLVAFFQEVDKGNMHLDQMLTMTKDVMVSGSGD 221

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
             Y++    F   +    +I  S N  +    + I G E     +++ + K+ GM++T  
Sbjct: 222 MQYMQVDKKFPAIEVATKMIVISDNTATEMLIKQIGGKE-----VLNQRFKEWGMKHTEI 276

Query: 177 KNASGLHDKNQITTARDQAILGILLRK 203
            N     +    T++ D + L   + +
Sbjct: 277 HNILPDLEGTNKTSSEDLSKLLARIER 303


>gi|15966291|ref|NP_386644.1| putative beta-lactamase precursor protein [Sinorhizobium meliloti
           1021]
 gi|15075562|emb|CAC47117.1| Putative beta-lactamase precursor protein [Sinorhizobium meliloti
           1021]
          Length = 278

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 59/172 (34%), Gaps = 21/172 (12%)

Query: 44  MASELHAKPKYSSIVI-DVNKNQMTGFKQDEPRYPASLTK--MMTLYIIFEYLQSKKLHL 100
           +A    A+P  +  V+ ++   +      DE    AS  K  +M      + +   +L L
Sbjct: 5   LAHICDAQPFVTRFVVRNLKTGETIERGADEETPSASTRKTSIMMA--ALKAVHEGRLAL 62

Query: 101 NTQIPVSKTAATQNPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
           +  I      A +  S ++  L      +    I  ++  S N  +    E ++      
Sbjct: 63  DEPITYEARFAEEVASGMFRYLTPGIVISLRDAITGMMVLSDNVCTKMVFERLT------ 116

Query: 159 AILMSNKAKKIGMQNTIYK--------NASGLHDKNQITTARDQAILGILLR 202
              + +  K IGM  T ++                   TTARDQA L   + 
Sbjct: 117 LEEVDSYCKSIGMHGTHHRFLIPPLALPPDHSLTSVTTTTARDQAFLLQTIL 168


>gi|213024068|ref|ZP_03338515.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 72

 Score = 67.6 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 7/58 (12%)

Query: 55  SSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNT--QIPVSKT 109
           S++++D+N N++      +  R  AS+TK+MT  ++ +     +L L+   ++ +S+T
Sbjct: 5   SAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDA----RLPLDEILKVDISQT 58


>gi|228965490|ref|ZP_04126576.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228794220|gb|EEM41738.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 143

 Score = 67.2 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 216 KFRYRNRIITNHNKLLN------KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           +F +++  + N NK++       K+  +DG++T ++ N  ++ V++ +  D  +++V++ 
Sbjct: 10  QFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLGDTRLISVILD 69

Query: 270 MPTSQERDQKALELITSFLEKKTLKHQQTHR 300
                    +  +L+    +  +    Q  +
Sbjct: 70  ADEENISFIETKKLLQYGFDPSSYSALQAFK 100


>gi|295114802|emb|CBL35649.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
           SM4/1]
          Length = 205

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 221 NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
              + N N        I G KTGYT  +G  +VT +      ++AV++   + Q      
Sbjct: 2   GHKMVNPNNKEYYYEGIVGGKTGYTSLAGNTLVTCVERNGTRLIAVIL--KSRQTHYADT 59

Query: 281 LELITSFL 288
             L+    
Sbjct: 60  KALLDYGF 67


>gi|17232314|ref|NP_488862.1| hypothetical protein all4822 [Nostoc sp. PCC 7120]
 gi|17133959|dbj|BAB76521.1| all4822 [Nostoc sp. PCC 7120]
          Length = 424

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 58/149 (38%), Gaps = 10/149 (6%)

Query: 59  IDVNKNQMTGFKQDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           +D+   +      ++    AS  K  ++     FE + + +++ N  + + +   T    
Sbjct: 185 LDMETGEYLDINGEKTFAAASTIKFPILIAL--FEEIDAGRINPNETLVMRRDLMTGGSG 242

Query: 117 KL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
            + Y K  + F   +    ++  S N  +    + + G        ++ K +  G+QNT+
Sbjct: 243 TMQYRKAGSRFKLMETASKMMIISDNTATNMIIDRLGGK-----NRLNQKFRTWGLQNTV 297

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKN 204
            +N  G       T+ +D   L  L+  N
Sbjct: 298 IRNLLGDFKGTNKTSPKDLVRLAALISNN 326


>gi|237800748|ref|ZP_04589209.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023606|gb|EGI03663.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 118

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 52/125 (41%), Gaps = 20/125 (16%)

Query: 24  IQRNIQLMGKILFLS---IIMISMASELHAK---------PKYSSIVIDVNKNQMTGFKQ 71
           ++  + ++G +  L+       + A+E  A             S++V+D+  +++     
Sbjct: 1   MKIRLSVLGLLCVLTGPVFTTPAFANETAALNRDPSNLHLASGSALVVDLQTDKVLYSSN 60

Query: 72  DEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
            +   P AS+TK+MT  ++ +     K  ++  IPV+    +Q P    +  +    +E 
Sbjct: 61  PDVIVPIASVTKLMTAMVVLDA----KQSMDEVIPVN---ISQTPEMKGVFSRVKLGSEM 113

Query: 131 GILAL 135
               +
Sbjct: 114 NRRDM 118


>gi|227511783|ref|ZP_03941832.1| possible VGP family vectorial glycosyl polymerization protein
          [Lactobacillus buchneri ATCC 11577]
 gi|227084985|gb|EEI20297.1| possible VGP family vectorial glycosyl polymerization protein
          [Lactobacillus buchneri ATCC 11577]
          Length = 504

 Score = 66.4 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 14/98 (14%)

Query: 6  IQSSAKKTFLTYPYGSIYIQ---RNIQLMGKILFLSIIMISMASELHAK-----PKYSS- 56
          ++       + +  G + +Q   R I+LM   L L+ +   + S +  +     P+YS  
Sbjct: 1  MKYDKSNRKIIFWGGRVMLQSAFRLIKLMIVGLTLTFVGTILTSSIVIRAKVKNPQYSFK 60

Query: 57 ----IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYII 89
               V+D    QM   K  D  R  ASL+K+MTLY+ 
Sbjct: 61 AKEIYVMDAKSGQMLYQKNEDHERPIASLSKLMTLYLA 98


>gi|228958789|ref|ZP_04120500.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800886|gb|EEM47792.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 143

 Score = 66.0 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 216 KFRYRNRIITNHNKLLN------KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           +F +++  + N NK++       K+  +DG++T ++ N  ++ V++ + +D  +++V++ 
Sbjct: 10  QFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLRDTRLISVILD 69

Query: 270 MPTSQERDQKALELITSFLEKKTLKHQQTHR 300
                    +  +L+    +  +    Q  +
Sbjct: 70  ADEENISFIETKKLLQYGFDPSSYSALQAFK 100


>gi|75908313|ref|YP_322609.1| penicillin-binding protein, transpeptidase [Anabaena variabilis
           ATCC 29413]
 gi|75702038|gb|ABA21714.1| Penicillin-binding protein, transpeptidase [Anabaena variabilis
           ATCC 29413]
          Length = 424

 Score = 66.0 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 58/149 (38%), Gaps = 10/149 (6%)

Query: 59  IDVNKNQMTGFKQDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           +D+   +      ++    AS  K  ++     FE + + +++ N  + + +   T    
Sbjct: 185 LDMETGEYLDINGEKTFAAASTIKFPILIAL--FEEIDAGRINPNETLVMRRDLMTGGSG 242

Query: 117 KL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
            + Y K  + F   +    ++  S N  +    + + G        ++ + +  G+QNT+
Sbjct: 243 TMQYRKAGSKFKLMETASKMMIISDNTATNMIIDRLGGK-----NRLNQRFRSWGLQNTV 297

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKN 204
            +N  G       T+ +D   L  L+  N
Sbjct: 298 IRNLLGDFKGTNKTSPKDLVRLAALISNN 326


>gi|319653045|ref|ZP_08007149.1| hypothetical protein HMPREF1013_03764 [Bacillus sp. 2_A_57_CT2]
 gi|317395264|gb|EFV75998.1| hypothetical protein HMPREF1013_03764 [Bacillus sp. 2_A_57_CT2]
          Length = 101

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 9/84 (10%)

Query: 30  LMGKILFLSIIMISMASELHAKPKY---SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMT 85
           L+  +L  S      A+E    P     ++IV D     +   K  D+  YPASLTK+ T
Sbjct: 5   LVFILLLFSFPTAYAAAEEPKDPAIISEAAIVTDSESGAVLYAKNADKKMYPASLTKIAT 64

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKT 109
                E        L     +SK 
Sbjct: 65  AIYAIENGD-----LKDIATISKK 83


>gi|282852867|ref|ZP_06262208.1| ErfK/YbiS/YcfS/YnhG [Lactobacillus gasseri 224-1]
 gi|282555975|gb|EFB61596.1| ErfK/YbiS/YcfS/YnhG [Lactobacillus gasseri 224-1]
          Length = 365

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ----ERDQKALELITSF 287
           +  + +DG+KTG T  +G    ++++     +V VVMG   +      R  +  +L+   
Sbjct: 9   DPNYPVDGLKTGTTDAAGACFASTMKKNGRRLVTVVMGAQHANGEDPSRFIQTKKLLKYI 68

Query: 288 LEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKK 327
            +  + K      K   S  S+++  +I   +++   + K
Sbjct: 69  FDNYSSKK----IKQGFSFASVRRVKVINGKEKSAPVYVK 104


>gi|108804547|ref|YP_644484.1| beta-lactamase [Rubrobacter xylanophilus DSM 9941]
 gi|108765790|gb|ABG04672.1| beta-lactamase [Rubrobacter xylanophilus DSM 9941]
          Length = 576

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 61/149 (40%), Gaps = 11/149 (7%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL- 118
           D+      G + D+  + AS  K+  +  ++  +   +LH + +I  ++         L 
Sbjct: 312 DLKSGAGYGVRPDQVFFSASTIKVPVMIAVYRRIDQGRLHYSDRIVTTEEDWAAGAGWLR 371

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT--IY 176
           +       T E  +  +I +S N  + A    + G        ++  A+ +G ++T   +
Sbjct: 372 WQTPGARSTVEDALWLMIAQSDNVATNALVRLVGGP-----GYVNEVARSLGAEDTALHW 426

Query: 177 KNAS---GLHDKNQITTARDQAILGILLR 202
           K +S    +   +  TT RD A+L   +R
Sbjct: 427 KLSSERAAVPSLDNRTTPRDMALLLAKIR 455


>gi|116255678|ref|YP_771511.1| hypothetical protein pRL110477 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115260326|emb|CAK03430.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 287

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 50/152 (32%), Gaps = 20/152 (13%)

Query: 63  KNQMTGFKQDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY- 119
             +  G   DE    AS  K  +M      +     +L L+ QI   K  A +  S ++ 
Sbjct: 34  SGETIGRGADEETPSASTRKTSIMMA--ALKAAHEGRLDLDEQITYEKRFAEEVASGMFR 91

Query: 120 -LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT--IY 176
            L      +    I  ++  S N  +    E ++         + +  K IGM  T   +
Sbjct: 92  YLTPGIVISLRDAITGMMVLSDNVCTKMVFERLT------LEEVDSYCKSIGMTGTNHRF 145

Query: 177 KNASGLHDKNQI------TTARDQAILGILLR 202
                    +        TTARDQ  L   + 
Sbjct: 146 LIPPLALSPDHSLKAVTTTTARDQVYLLQTIL 177


>gi|257487909|ref|ZP_05641950.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330883616|gb|EGH17765.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 118

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 8/82 (9%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++VID+  +++      +   P AS+TK+MT  ++ +     K  ++  IPV+    +Q
Sbjct: 44  SAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVVLDA----KQSMDEVIPVN---ISQ 96

Query: 114 NPSKLYLKEKTYFTTEQGILAL 135
            P    +  +    +E     +
Sbjct: 97  TPEMKGVFSRVKLGSEMNRRDM 118


>gi|241666559|ref|YP_002984643.1| putative beta-lactamase precursor protein [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240862016|gb|ACS59681.1| putative beta-lactamase precursor protein [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 287

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 20/152 (13%)

Query: 63  KNQMTGFKQDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY- 119
             +  G   DE    AS  K  +M      +     +L L+ +I   K  A +  S ++ 
Sbjct: 34  TGETIGRGADEETPSASTRKTSIMMA--ALKAAHEGRLDLDERITYEKRFAEEVASGMFR 91

Query: 120 -LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT--IY 176
            L      +    I  ++  S N  +    E ++  E      + +  K IGM  T   +
Sbjct: 92  YLTPGIVISLRDAITGMMVLSDNVCTKMVFERLTLDE------VDSYCKSIGMTGTNHRF 145

Query: 177 KNASGLHDKNQI------TTARDQAILGILLR 202
                    +        TTARDQ  L   + 
Sbjct: 146 LIPPLALSPDHSLKAVTTTTARDQVYLLQTIL 177


>gi|289673757|ref|ZP_06494647.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. syringae
           FF5]
          Length = 136

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 8/105 (7%)

Query: 190 TARDQAILGILLRKNFPQYYKYFSI--RKFRYRNRIIT----NHNKLLNKM-HNIDGIKT 242
           TARD   L +  RK +P   +  +   +   +R    T    N + L+ K   +I   KT
Sbjct: 1   TARDLTKLVMAARK-YPLLSELSTTEQKTVTFRKPTYTLGFSNTDHLVRKDNWDIKLTKT 59

Query: 243 GYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
           G+T  +G  +V      + P+  V++           A  +    
Sbjct: 60  GFTNQAGHCLVLLTSMANRPVSVVILDAFGKYTHFADASRIRKWM 104


>gi|241889185|ref|ZP_04776488.1| hypothetical protein GEMHA0001_1037 [Gemella haemolysans ATCC
           10379]
 gi|241864022|gb|EER68401.1| hypothetical protein GEMHA0001_1037 [Gemella haemolysans ATCC
           10379]
          Length = 399

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 102/254 (40%), Gaps = 22/254 (8%)

Query: 57  IVIDVNKNQMTGFKQDEPRYPASLTKM---MTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +V ++N  ++   + +  +   S+ K+   + LY++ + L++KK+ L+ +I +   +   
Sbjct: 44  VVSELNTGKIISKRGENEKV--SVGKLPNYLALYLLTDNLKNKKITLDEKINI--ASGDD 99

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             SK  ++  +  T +  I  L     N+ S +  + +                 + + +
Sbjct: 100 ILSKYKIE--SSITVKDAIFLL----ENENSNSLNQAVFTHFNVTLDKAKETLAAMSLHD 153

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK 233
           T  ++    ++ N  +TA++ + L  L+ KN+P+  +     +    +R   N++    +
Sbjct: 154 TKLESLD--NNGNNTSTAKNISYLTSLILKNYPEITEITKNPEHTLVSREKINNSVEFKE 211

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ----ERDQKALELITSFLE 289
                 +   Y+     N VT     +  ++  V+     +    ++ QK  + + S   
Sbjct: 212 SDKFRVLGLDYSDK---NSVTYAYSGNTKLIITVLNQSDDKATYFDKLQKTYDYLFSNYN 268

Query: 290 KKTLKHQQTHRKDN 303
            K      T+  +N
Sbjct: 269 YKLALKAGTYTINN 282


>gi|284929762|ref|YP_003422284.1| beta-lactamase class A [cyanobacterium UCYN-A]
 gi|284810206|gb|ADB95903.1| beta-lactamase class A [cyanobacterium UCYN-A]
          Length = 340

 Score = 63.3 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 58/147 (39%), Gaps = 8/147 (5%)

Query: 59  IDVNKNQMTGFKQDEPRYPASLTKMMTLYIIF-EYLQSKKLHLNTQIPVSKTAATQNPSK 117
           +D++ N    F   +    AS  K+  + + F E + +  + L+  I + K         
Sbjct: 107 LDLDSNTYVNFNGTKSIAAASTIKI-PILVAFFEKVDAGDISLDQMITMDKEIIVGGSGN 165

Query: 118 L-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
           + Y++    FT  +    +I  S N  +      I G        ++ + KK GM+ T+ 
Sbjct: 166 MQYMETGKQFTALEIARKMIIISDNTATELLIRQIGGKL-----FLNERFKKWGMRQTVI 220

Query: 177 KNASGLHDKNQITTARDQAILGILLRK 203
            N+    D    T+  D A L + + K
Sbjct: 221 NNSLPDLDGTNRTSPEDLAKLLLKIEK 247


>gi|150397637|ref|YP_001328104.1| putative beta-lactamase protein [Sinorhizobium medicae WSM419]
 gi|150029152|gb|ABR61269.1| putative beta-lactamase precursor protein [Sinorhizobium medicae
           WSM419]
          Length = 290

 Score = 63.0 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 21/172 (12%)

Query: 44  MASELHAKPKYSSIVI-DVNKNQMTGFKQDEPRYPASLTK--MMTLYIIFEYLQSKKLHL 100
           +A    A+P  +  ++ ++   +      +E    AS  K  +M      + +  ++L L
Sbjct: 14  LAEICDAQPFVTRFLVRNLKTGETIERGAEEETPSASTRKTSIMMA--ALKAVHERRLDL 71

Query: 101 NTQIPVSKTAATQNPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
              I      A +  S ++  L      +    I  ++  S N  +    E ++      
Sbjct: 72  EEPITYEARFAEEVASGMFRYLTPGIVISLRDAITGMMVLSDNVCTRMVFERLT------ 125

Query: 159 AILMSNKAKKIGMQNTIYK--------NASGLHDKNQITTARDQAILGILLR 202
              +    K IGM+ T ++                   TTARDQA L   + 
Sbjct: 126 LEEVDCYCKSIGMKGTHHRFLIPPLALPPDHALTSVTTTTARDQAFLLQTIL 177


>gi|227498697|ref|ZP_03928841.1| beta-lactamase [Acidaminococcus sp. D21]
 gi|226904153|gb|EEH90071.1| beta-lactamase [Acidaminococcus sp. D21]
          Length = 263

 Score = 62.6 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 14/144 (9%)

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-LKEKTY 125
            G K       ASL K++ L  + E ++  + +L   I +   A T     +  LK    
Sbjct: 37  IGGKN--ELPSASLIKLLVLVELCEEVRRGRANLKEAISILGPAITGGDGIIKELKIGHT 94

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI-----YKNAS 180
           FT E+    +I  S N+ +    + +          ++ +AKK+G+  T        +AS
Sbjct: 95  FTLEELATLMIIVSDNEAANQLIDRLG------MKAINERAKKLGLAQTHLGRLMMADAS 148

Query: 181 GLHDKNQITTARDQAILGILLRKN 204
           G  +++  T+A D   L  ++ + 
Sbjct: 149 GEKERDNWTSADDTVHLLRVICET 172


>gi|218459734|ref|ZP_03499825.1| hypothetical protein RetlK5_09644 [Rhizobium etli Kim 5]
          Length = 239

 Score = 62.6 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 50/158 (31%), Gaps = 20/158 (12%)

Query: 57  IVIDVNKNQMTGFKQDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +V ++   +      DE    AS  K  +M        +   +L L   I      A + 
Sbjct: 28  MVRNLRSGETIERGADEETPSASTRKTSIMMA--ALRAVHEGRLDLEEPITYEARFAQEV 85

Query: 115 PSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
            S ++  L      +    I  ++  S N  +    E ++         +    K IGM 
Sbjct: 86  ASGMFRYLTPGIVISLRDAITGMMVLSDNVCTKMVFERLT------LEEVDGYCKSIGMS 139

Query: 173 NTIYK--------NASGLHDKNQITTARDQAILGILLR 202
            T ++        +          TTARDQ  L   + 
Sbjct: 140 GTHHRFLIPPLALSPDHSLRSVTTTTARDQVFLLQAIL 177


>gi|808967|emb|CAA25532.1| unnamed protein product [Escherichia coli]
          Length = 113

 Score = 62.6 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 3/76 (3%)

Query: 214 IRKFRYRNRIIT--NHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM 270
           +  F      +   N N L+ +   NI   KTG+T  +G  +V      + P+  VVM  
Sbjct: 4   MATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDA 63

Query: 271 PTSQERDQKALELITS 286
                    A  L T 
Sbjct: 64  FGKYTHFADASRLRTW 79


>gi|11527844|gb|AAG37024.1|AF277571_1 putative D,D-carboxypeptidase [Enterococcus faecium]
          Length = 91

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 6/77 (7%)

Query: 214 IRKFRYRNRIITNHNKLLNKM-----HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            +    R     N N+LL+         + G+KTG +   G  +V++     +  + VVM
Sbjct: 11  EKWPNGREVTYNNSNELLDPNSPYYRPEVIGLKTGTSSLGGACVVSAAVIDGETYICVVM 70

Query: 269 GMPTSQERDQKALELIT 285
           G  T + R Q ++ ++ 
Sbjct: 71  GS-TKESRFQDSVAILD 86


>gi|119494566|ref|ZP_01624704.1| Penicillin-binding protein, transpeptidase [Lyngbya sp. PCC 8106]
 gi|119452098|gb|EAW33308.1| Penicillin-binding protein, transpeptidase [Lyngbya sp. PCC 8106]
          Length = 478

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 58/151 (38%), Gaps = 12/151 (7%)

Query: 57  IVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIF-EYLQSKKLHLNTQIPV-SKTAATQN 114
           +++D++         +     AS  K+  + + F + +   K+ LN  + +  +  A  +
Sbjct: 216 LLVDLDTGGYVDINSESAFAAASTIKV-PILVAFFQAVDEGKISLNEVLTMEGQHIAGGS 274

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
               Y    T +T  +    +I  S N  +    E + G     A  ++ K    G+ NT
Sbjct: 275 GDMQYQPSGTEYTALETATKMIVISDNTATNMLIERLGG-----AEFINQKFLDWGLHNT 329

Query: 175 IYKNASGLHD--KNQITTARDQAILGILLRK 203
           + ++   L D      TT +D   L   L +
Sbjct: 330 VIRDV--LPDLRGTNKTTPKDLVNLLTQLNQ 358


>gi|167947195|ref|ZP_02534269.1| D-alanyl-D-alanine carboxypeptidase [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 66

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 47 ELHAKPKYSS---IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKK 97
           + + PK ++   +++D    ++       +   PASLTK+MT Y +F  LQ  +
Sbjct: 2  PIPSPPKVAASGYLLLDFYSGKILAESNASQRLEPASLTKIMTAYAVFRELQGGQ 56


>gi|51892073|ref|YP_074764.1| putative beta-lactamase [Symbiobacterium thermophilum IAM 14863]
 gi|51855762|dbj|BAD39920.1| putative beta-lactamase [Symbiobacterium thermophilum IAM 14863]
          Length = 407

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/112 (13%), Positives = 39/112 (34%), Gaps = 2/112 (1%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
              A  +    + S + +D+       F+  +P  PAS  K+     + E + + ++  N
Sbjct: 162 TVYAVAVEYPGRISVVAVDLTTGSRYEFRARDPYLPASTFKLPVALCVLEAIDAGEMAWN 221

Query: 102 TQIPVSKTAATQNPSKLYLKE--KTYFTTEQGILALITRSANDVSTAFGEFI 151
           T +  ++       +  + +    + +T    +   +  S N         +
Sbjct: 222 TLVTYTEEDYEPVGAGGFAQAAFGSRWTVRNLVDRSLISSNNVAVKMLARTL 273


>gi|65319856|ref|ZP_00392815.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
           str. A2012]
          Length = 120

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 33/68 (48%)

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
           K+  +DG++T ++ NS ++ V++ +  D  +++V++          +  +L+    +  +
Sbjct: 10  KLQGVDGLQTSFSTNSNYSFVSTAKRGDTRLISVILDADNENSTFIETKKLLQYGFDPSS 69

Query: 293 LKHQQTHR 300
               Q  +
Sbjct: 70  YSALQAFK 77


>gi|33322449|gb|AAQ06951.1|AF496279_1 d-alanyl-D-alanine carboxypeptidase precursor [Lactobacillus
           delbrueckii subsp. lactis]
          Length = 103

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 7/87 (8%)

Query: 239 GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ----ERDQKALELITSFLEKK--- 291
           G+KTG T  +G     +++     I+ VV+G   +      R  +  +L+    +     
Sbjct: 1   GLKTGTTDKAGACFAGTVKKNGHRIITVVLGAKHANSQDPSRFVQTAKLMHYVYQNYTAV 60

Query: 292 TLKHQQTHRKDNLSSTSLKKSLMIKKL 318
           TLK   +    N       K    K +
Sbjct: 61  TLKKGSSISGANTVKVPEGKETSSKVV 87


>gi|159028242|emb|CAO88052.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 393

 Score = 61.0 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 60/151 (39%), Gaps = 8/151 (5%)

Query: 49  HAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIF-EYLQSKKLHLNTQIPVS 107
           + K +  ++ ID++      F+ D     AS  K+  + + F E + + K+ L+  +  +
Sbjct: 122 YPKLQAGALFIDLDNGAYANFRGDTIFAAASTIKI-PILVAFFEDVDAGKIRLDETLVAT 180

Query: 108 KTA-ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
           K   A+ +    YL     +T  +    +   S N  +    + + G        ++ + 
Sbjct: 181 KDVLASGSGDMQYLGLNKTYTALETATKMNVISDNTATNMLIKRMGGK-----KALNQRF 235

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +  G+ +T+  N     +    T+ RD   +
Sbjct: 236 QAWGLTSTVINNPLPDLEGTNTTSPRDLVTI 266


>gi|166364611|ref|YP_001656884.1| putative beta-lactamase protein [Microcystis aeruginosa NIES-843]
 gi|166086984|dbj|BAG01692.1| putative beta-lactamase protein [Microcystis aeruginosa NIES-843]
          Length = 393

 Score = 61.0 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 62/151 (41%), Gaps = 8/151 (5%)

Query: 49  HAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYII-FEYLQSKKLHLNTQIPVS 107
           + K +  ++ ID++      F+ D     AS  K+  + +  FE + + K+ L+  +  +
Sbjct: 122 YPKLQAGALFIDLDNGAYANFRGDTIFAAASTIKI-PILVAFFEDVDAGKIRLDEPLVAT 180

Query: 108 KTA-ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
           K   A+ +    YL     +T  +    +   S N  +    + + G E      ++ + 
Sbjct: 181 KDVLASGSGDMQYLGVNKTYTALETATKMNVISDNTATNMLIKRMGGKEA-----LNQRF 235

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
           +  G+ +T+  NA    +    T+ RD   +
Sbjct: 236 QAWGLTSTVINNALPDLEGTNTTSPRDLVTI 266


>gi|159903676|ref|YP_001551020.1| Beta-lactamase class A [Prochlorococcus marinus str. MIT 9211]
 gi|159888852|gb|ABX09066.1| Beta-lactamase class A [Prochlorococcus marinus str. MIT 9211]
          Length = 356

 Score = 61.0 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 62/159 (38%), Gaps = 8/159 (5%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           +A E       + I+ +    +   F  ++    AS  K+  L++  E L   KL  + +
Sbjct: 92  LADEYKDLEVSAYILFED--GRYAQFNAEKSLPSASTIKIAILFLSLEMLDDGKLRWDEE 149

Query: 104 IPVSKTAATQNPSKLYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           I ++K +  +    +  +     F   +    +I  S N  +    E + G       ++
Sbjct: 150 IELTKESIAKGAGWMRYQSLGKKFPIHEITTEMIRVSDNTAANLLIERVGG-----LDIL 204

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201
           + + K++G+  T   +          T+A+D + +  L+
Sbjct: 205 NKRFKELGLMQTEINSLLPDLSGTNKTSAKDLSKIMKLV 243


>gi|158319959|ref|YP_001512466.1| beta-lactamase [Alkaliphilus oremlandii OhILAs]
 gi|158140158|gb|ABW18470.1| beta-lactamase [Alkaliphilus oremlandii OhILAs]
          Length = 257

 Score = 61.0 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 58/154 (37%), Gaps = 23/154 (14%)

Query: 56  SIVI-DVNKNQMTGFKQDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           ++VI + N  ++    QD     AS  K  +M+  +  + ++  KL +N  I ++    T
Sbjct: 18  AVVIKNFNNGEIIQINQDYIFPSASTIKLVIMSELL--KQVKENKLSINETIVITDKMIT 75

Query: 113 QN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                   L     FT  + +  +I  S N  +    + +          ++  A+++G+
Sbjct: 76  GGDGILKELNVGHRFTLGEIMTLMIIISDNTATNLLIDIVG------MDNVNRMAQELGL 129

Query: 172 QNTIY--------KNASGLHDKNQITTARDQAIL 197
           + T              G   +   T+A+D   +
Sbjct: 130 KRTKLQRKMMDSVAVKYG---RENYTSAQDMLNI 160


>gi|81300412|ref|YP_400620.1| beta-lactamase [Synechococcus elongatus PCC 7942]
 gi|81169293|gb|ABB57633.1| beta-lactamase [Synechococcus elongatus PCC 7942]
          Length = 375

 Score = 61.0 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 63/166 (37%), Gaps = 12/166 (7%)

Query: 37  LSIIMISMASELHAKPKYSS--IVIDVNKNQMTGFKQDEPRYPASLTKM--MTLYIIFEY 92
           L+ +   +A+ +  +P   +   + D++               AS  K+  +      E 
Sbjct: 107 LAPLQTQLAALIQQQPALKAELFLTDLDTGNYVDINGTTSIPAASTIKIPVLAAL--MEA 164

Query: 93  LQSKKLHLNTQIPVSKT-AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
           +Q  K+ L+ Q+ +++   A++  +  Y    + FT  +  + +I  S N  +      +
Sbjct: 165 VQQGKVRLDEQLTMTQDLVASEAGAMQYQPVGSKFTVLETAIEMIRISDNTATNLLIARL 224

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            G        ++ +    G+Q T  +N     +    TT ++   L
Sbjct: 225 GG-----IEAVNQRFAAWGLQTTRIRNLLPDLEGTNSTTPKEMVEL 265


>gi|17232035|ref|NP_488583.1| hypothetical protein alr4543 [Nostoc sp. PCC 7120]
 gi|17133679|dbj|BAB76242.1| alr4543 [Nostoc sp. PCC 7120]
          Length = 504

 Score = 61.0 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 106/289 (36%), Gaps = 35/289 (12%)

Query: 48  LHAKPKYS--SIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYII-FEYLQSKKLHLNTQI 104
             A P  S    ++D++               AS  K+  + +  F+ + + K+ L+  +
Sbjct: 202 ATATPNLSPGVFLVDLDTGGYVDINAANALPAASTIKI-PILVAFFQDVDAGKIRLDELL 260

Query: 105 PVSKTAATQNPSKLYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            + +            K   T +   +    +IT S N  +      + G E      ++
Sbjct: 261 TMKQEMVAGGSGNFQYKPAGTQYPALEVATKMITISDNTATNMLITRLGGMEA-----LN 315

Query: 164 NKAKKIGMQNTIYKNASGLHD--KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
            + +  G+ NT+ +N   L D      T+ ++   +  ++ +         S+R    R+
Sbjct: 316 ERFRSWGLTNTVIRNI--LPDLPGTNTTSPKELGNIMTMVSQ-----GNLVSMRS---RD 365

Query: 222 RII-----TNHNKLLNKMHNIDGI---KTG--YTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
           +I+     T  + LL            KTG   T  +   ++ +       +VAV++  P
Sbjct: 366 QILDIMRQTERDNLLPSGLGAGARVYHKTGDIGTMLADAGLIDTPT-GKRYVVAVMVQRP 424

Query: 272 TSQERDQKALELITSFLEKKTLKHQQT--HRKDNLSSTSLKKSLMIKKL 318
            +  R +K +  I+    ++  + + T  +   NL +T+    +M    
Sbjct: 425 NNDPRAEKLISSISRAAYQQFSQSEPTPSNTTSNLPTTAYPSPVMASPA 473


>gi|227825073|ref|ZP_03989905.1| beta-lactamase [Acidaminococcus sp. D21]
 gi|226905572|gb|EEH91490.1| beta-lactamase [Acidaminococcus sp. D21]
          Length = 284

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 74/200 (37%), Gaps = 27/200 (13%)

Query: 24  IQRNIQLMGK-ILFLSIIMISMASELHAKPKYSSI-----------VI--DVNKNQMTGF 69
           +++   LMG  +L +++    + + ++     +++           V   D+   +   +
Sbjct: 5   MKKGAALMGAALLTVTLWSTPVMAAVNVPANLAAVSKTVKGAAPYGVYFSDLKTGK-GYY 63

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAATQNPSKLYLKEKTYFTT 128
           +       AS+ K+  L   +E ++  KL L     ++ K     +     + + T  T 
Sbjct: 64  RNSVQTPAASMIKVFILAAAYEDIRDGKLSLTETFTLTDKNVVAGSGVLQGMPKGTTVTV 123

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA-----SGLH 183
           ++ +  +I  S N  +    + +          ++   K+ G ++T  +       +   
Sbjct: 124 KKALDEMIIHSDNTATNLMIDRLG------MDRVNRYLKEHGYKDTTLRRKMMDFDAAKK 177

Query: 184 DKNQITTARDQAILGILLRK 203
               +TT RD  +L   L +
Sbjct: 178 GAENMTTVRDVGLLFKRLYQ 197


>gi|294852416|ref|ZP_06793089.1| predicted protein [Brucella sp. NVSL 07-0026]
 gi|294821005|gb|EFG38004.1| predicted protein [Brucella sp. NVSL 07-0026]
          Length = 165

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 27/49 (55%)

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           + TG+T  SG+ +V S       +   + G+ + +ER+++A +LI   +
Sbjct: 1   MGTGFTEASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLIQWGM 49


>gi|75907630|ref|YP_321926.1| penicillin-binding protein, transpeptidase [Anabaena variabilis
           ATCC 29413]
 gi|75701355|gb|ABA21031.1| Penicillin-binding protein, transpeptidase [Anabaena variabilis
           ATCC 29413]
          Length = 504

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/290 (15%), Positives = 101/290 (34%), Gaps = 37/290 (12%)

Query: 48  LHAKPKYS--SIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYII-FEYLQSKKLHLNTQI 104
             A P  S    ++D++               AS  K+  + +  F+ + + K+ L+  +
Sbjct: 202 ATANPNLSPGVFLVDLDTGGYVDINAANALPAASTIKI-PILVAFFQDVDAGKIRLDEVL 260

Query: 105 PVSKTAATQNPSKLYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
            + +            K   T +   +    +IT S N  +      + G        ++
Sbjct: 261 TMQQEMVAGGSGNFQYKPAGTQYPALEVATKMITVSDNTATNMLIARLGG-----IEALN 315

Query: 164 NKAKKIGMQNTIYKNASGLHD--KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN 221
            + +  G+  T+ +N   L D      T+ ++   +  ++ +         S+R    R+
Sbjct: 316 ERFRSWGLTTTVIRNI--LPDLPGTNTTSPKELGNIMTMVSQ-----GNLVSMRS---RD 365

Query: 222 RII-----TNHNKLLNKMHNIDGI---KTG--YTRNSGFNIVTSLRYKDDPIVAVVMGM- 270
           +I+     T  + LL            KTG   T  +   ++ +        +  VM   
Sbjct: 366 QILDIMRQTERDNLLPSGLGAGARVYHKTGDIGTMLADAGLIDTPT--GKRYIVAVMVQR 423

Query: 271 PTSQERDQKALELITSFLEKKTLKHQQT--HRKDNLSSTSLKKSLMIKKL 318
           P +  R +K +  I+    ++  + + T  +   NL +T+    +M    
Sbjct: 424 PNNDPRAEKLISSISRAAYQQFSQSEPTPSNTTSNLPTTAYPSPIMASPA 473


>gi|226311564|ref|YP_002771458.1| hypothetical protein BBR47_19770 [Brevibacillus brevis NBRC 100599]
 gi|226094512|dbj|BAH42954.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 270

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 73/196 (37%), Gaps = 27/196 (13%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPV-SKTAATQNPS 116
           D+   +     +D+  Y AS+ K  +MT   +F    + K     +I + +         
Sbjct: 26  DLQTGETLSINEDQRFYAASVIKIPIMTA--VFAEAYAGKFAFEDKIKLRTDDLVGGAGV 83

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
             ++   T FT    +  +I +S N  +      + G+E      + N  +K  M+N+ +
Sbjct: 84  LQHMTPGTEFTIRDLVTLMIIQSDNTATNMM-IDLVGTES-----IRNAMQKTEMKNSQF 137

Query: 177 -----KNASGLHDKNQITTARDQAILGILL----RKNFPQYYKYFSI-RKFRYRNRIITN 226
                   + L   N++ TA+D       L      ++    K  +I +  ++R RI   
Sbjct: 138 HNKLMVVPAELEGYNEV-TAKDMGSHLRYLATGKIISYDSCLKMVAILKTQQHRERI--- 193

Query: 227 HNKLLNKMHNIDGIKT 242
               L    + D I T
Sbjct: 194 --PFLLPDPDGDVIGT 207


>gi|56750069|ref|YP_170770.1| beta-lactamase [Synechococcus elongatus PCC 6301]
 gi|56685028|dbj|BAD78250.1| beta-lactamase [Synechococcus elongatus PCC 6301]
          Length = 317

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 63/166 (37%), Gaps = 12/166 (7%)

Query: 37  LSIIMISMASELHAKPKYSS--IVIDVNKNQMTGFKQDEPRYPASLTKM--MTLYIIFEY 92
           L+ +   +A+ +  +P   +   + D++               AS  K+  +      E 
Sbjct: 49  LAPLQTQLAALIQQQPALKAELFLTDLDTGNYVDINGTTSIPAASTIKIPVLAAL--MEA 106

Query: 93  LQSKKLHLNTQIPVSKT-AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
           +Q  K+ L+ Q+ +++   A++  +  Y    + FT  +  + +I  S N  +      +
Sbjct: 107 VQQGKVRLDEQLTMTQDLVASEAGAMQYQPVGSKFTVLETAIEMIRISDNTATNLLIARL 166

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            G        ++ +    G+Q T  +N     +    TT ++   L
Sbjct: 167 GG-----IEAVNQRFAAWGLQTTRIRNLLPDLEGTNSTTPKEMVEL 207


>gi|323483091|ref|ZP_08088484.1| hypothetical protein HMPREF9474_00233 [Clostridium symbiosum
           WAL-14163]
 gi|323403631|gb|EGA95936.1| hypothetical protein HMPREF9474_00233 [Clostridium symbiosum
           WAL-14163]
          Length = 262

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 99/255 (38%), Gaps = 48/255 (18%)

Query: 56  SIVI-DVNKNQMTGFKQDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +IVI D+   +     +DE    ASL K  +++    F   +  ++ L+ +I + +  + 
Sbjct: 22  AIVIEDLKTGEAVEINRDEVFPAASLIKVPVLSAL--FRMAKESQIALDERIEL-EKDSR 78

Query: 113 QNPSKL--YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                +   L +    +     + +IT S N  +    + I  S+      ++++ + +G
Sbjct: 79  IGGFGILKDLGDGLNPSVRDLAVLMITLSDNIAANLLIDRIGMSQ------INSELQAMG 132

Query: 171 MQNTIYKNAS--------GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
           M++T+ +           GL      T+A D   L   +     +      I    +R +
Sbjct: 133 MKHTVLQRKMMDSQAKERGLD---NYTSAGDMQKLMKAIL----ESSFRGDILDILFRQQ 185

Query: 223 IITNHNKLLNKMHNI--DGIKTGYTR----NSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
               +NKL   M        KTG       ++G  I+ +    D  I+A+V+    +  R
Sbjct: 186 C---NNKLPALMEGDVRFAHKTGDLPGVEHDAG--IICT---DDREIIAIVLTDELADNR 237

Query: 277 -----DQKALELITS 286
                +Q+  +LI S
Sbjct: 238 EGIWLNQEIGKLINS 252


>gi|87198305|ref|YP_495562.1| Beta-lactamase [Novosphingobium aromaticivorans DSM 12444]
 gi|87133986|gb|ABD24728.1| Beta-lactamase [Novosphingobium aromaticivorans DSM 12444]
          Length = 353

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 67/213 (31%), Gaps = 35/213 (16%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYS--------------SIV-----------ID 60
           R  +++  ++  +  +++    + ++   S              +I            +D
Sbjct: 36  RTARIIAALMVAAPALVATVPAVQSRATVSLQDQRDQAIQQQVAAIAAEGRGRIGVAAMD 95

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN--PSKL 118
           ++         D P   AS  K+       E ++     L+ Q P+    A      ++ 
Sbjct: 96  LDGGGQIFVNGDMPFPMASTAKVAVAATFLEQVEKGNFRLDQQFPMMVRVAETGRVSAEA 155

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIY 176
            L+  T  T +  +  +ITRS N+ +      + G  +  ++        +++       
Sbjct: 156 PLRAGTVMTAQSLMELMITRSHNEATDGLIHAVGGYENVNRWLTRNGITGQRLDHTMATL 215

Query: 177 KNASGLHDK------NQITTARDQAILGILLRK 203
               G  D          +T R    L   + +
Sbjct: 216 VRDDGRIDPAKVIDTRTSSTPRAMIALLAAIDR 248


>gi|16331861|ref|NP_442589.1| hypothetical protein slr0121 [Synechocystis sp. PCC 6803]
 gi|1001780|dbj|BAA10659.1| slr0121 [Synechocystis sp. PCC 6803]
          Length = 495

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 55/154 (35%), Gaps = 8/154 (5%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           S+  A   YS   IDV+  Q    K +     AS  K+      FE +   K+ L+ ++P
Sbjct: 223 SKAPAINSYSYF-IDVDNGQFANAKGETQLPAASTIKIPVAIAFFEAVDQGKIQLHEELP 281

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGI--LALITRSANDVSTAFGEFISGSEKKFAILMS 163
           +++         +        +         +I  S N  +    + + G E      ++
Sbjct: 282 LTQDVIVGEAGTMQYDVGKRSSYPALEVVTKMIVISDNTATNMLIKRLGGKE-----FLN 336

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
            + +   M  T   N     +    T+ +D A+L
Sbjct: 337 QRFQAWQMPQTKINNYLPDLEGTNTTSPQDLALL 370


>gi|332708822|ref|ZP_08428793.1| beta-lactamase class A [Lyngbya majuscula 3L]
 gi|332352364|gb|EGJ31933.1| beta-lactamase class A [Lyngbya majuscula 3L]
          Length = 490

 Score = 59.9 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 78/222 (35%), Gaps = 30/222 (13%)

Query: 60  DVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIF-EYLQSKKLHLNTQIPVSKTAATQNPSK 117
           D++             +PA S  K+  + I F + + + K+ L+  I +           
Sbjct: 259 DLDTGAFL-ESNSRLIFPAASTIKL-PILIAFFQDVDAGKVLLDEYITMKPEMIAGGSGN 316

Query: 118 L-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
           + Y K    +   +    +IT S N  +    E + G       +++ + +  G++ T+ 
Sbjct: 317 MQYQKPGKQYKALEVATKMITISDNTATNMLIERLGG-----IEVLNQRFRSWGLKKTVL 371

Query: 177 KNASGLHD--KNQITTARDQAILGILLRKNFPQYYKYFS--IRKFRYRNRIITNHNKLLN 232
           +N   L D      T+ R+ A L   L     +  K+ S   R       I T  N LL 
Sbjct: 372 RNP--LPDLPGTNTTSPRELASLIFNL-----EQGKWISPQSRTDLIDIMIQTKTNTLLP 424

Query: 233 KMHN---IDGIKTGYTRNSGFNI--VTSLRY-KDDPIVAVVM 268
           +          KTG     G  +  V  ++       +  VM
Sbjct: 425 QGLGNGATIAHKTGTL---GRLLADVGLVKMPNGKRYIISVM 463


>gi|113953603|ref|YP_730177.1| carboxylesterase, beta-lactamase family protein [Synechococcus sp.
           CC9311]
 gi|113880954|gb|ABI45912.1| carboxylesterase, beta-lactamase family protein [Synechococcus sp.
           CC9311]
          Length = 373

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 14/147 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMT--LYIIFEYLQSKKLHLNTQIPVSKTA 110
           + S+ ++ ++  +      D     AS  K  T  L +  E + + +L  N  + +SKT 
Sbjct: 111 QVSAFMLALDDGRYAQLNPDTALPAASAIK--TPILLVAIEEIDAGRLSWNEPLTLSKTV 168

Query: 111 ATQNPSKLYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                  +  K   T F T +    +I  S N  +    E + G        ++ +   +
Sbjct: 169 VGGGAGWMASKPLGTRFPTYEVATEMIRVSDNTATNLLIERVGGQ-----ADLNARFNSL 223

Query: 170 GMQNTIYKNASGLHD--KNQITTARDQ 194
           G+  T   N   L D      T+ARD 
Sbjct: 224 GLSATKVNNW--LPDLKGTNTTSARDL 248


>gi|139439565|ref|ZP_01772997.1| Hypothetical protein COLAER_02024 [Collinsella aerofaciens ATCC
           25986]
 gi|133775118|gb|EBA38938.1| Hypothetical protein COLAER_02024 [Collinsella aerofaciens ATCC
           25986]
          Length = 357

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 55/152 (36%), Gaps = 24/152 (15%)

Query: 56  SIVIDVNK-----NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           ++ +D         ++     D  R  AS+ K+  L    E + + +L L+ QI V++  
Sbjct: 117 AVALDPQTFASLDGEVAVA-PDARRVAASIIKLPILACALETVTAGELSLDEQITVTQQD 175

Query: 111 ATQNPSKLYLK-EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                  +  +     +  ++ + A+I +S N  +      +          ++     +
Sbjct: 176 IVGGSGNIQSRGAGVSYGIDELLHAMIAQSDNVAANLVIGRLG------MDTVNETCAAL 229

Query: 170 GMQNTIY--------KNASGLHDKNQITTARD 193
           G+  T+           A G   +   T+ARD
Sbjct: 230 GLTQTVLARLMMDTEAQAQG---RENYTSARD 258


>gi|162329895|pdb|2J9O|A Chain A, Structure Of Pbp-A, L158e Mutant
 gi|162329896|pdb|2J9O|B Chain B, Structure Of Pbp-A, L158e Mutant
 gi|162329897|pdb|2J9O|C Chain C, Structure Of Pbp-A, L158e Mutant
 gi|162329898|pdb|2J9O|D Chain D, Structure Of Pbp-A, L158e Mutant
 gi|167013198|pdb|2JBF|A Chain A, Structure Of Pbp-A, L158e Mutant. Acyl-Enzyme Complex With
           Penicillin-G.
 gi|167013199|pdb|2JBF|B Chain B, Structure Of Pbp-A, L158e Mutant. Acyl-Enzyme Complex With
           Penicillin-G.
 gi|167013200|pdb|2JBF|C Chain C, Structure Of Pbp-A, L158e Mutant. Acyl-Enzyme Complex With
           Penicillin-G.
 gi|167013201|pdb|2JBF|D Chain D, Structure Of Pbp-A, L158e Mutant. Acyl-Enzyme Complex With
           Penicillin-G
          Length = 298

 Score = 59.1 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 93/263 (35%), Gaps = 31/263 (11%)

Query: 61  VNKNQMTGFKQDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK 117
           ++         D+    AS  K  ++  +  F+ +   ++ L  ++ +     A +  + 
Sbjct: 43  LDSGASLNVGGDQVFPAASTIKFPILVAF--FKAVDEGRVTLQERLTMRPDLIAPEAGTL 100

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
            Y K  + +   +    +IT S N  +    + + G     A  ++ + ++ G++NT+  
Sbjct: 101 QYQKPNSQYAALEVAELMITISDNTATNMIIDRLGG-----AAELNQQFQEWGLENTVIN 155

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIITNHNKLLNK 233
           N          T+ RD A L + + +      +  S R          R +TN   LL  
Sbjct: 156 NPEPDMKGTNTTSPRDLATLMLKIGQ-----GEILSPRSRDRLLDIMRRTVTNT--LLPA 208

Query: 234 MHNIDGIKTGYTRNSGFNIVTSLRY----KDDPIVAVVM-----GMPTSQERDQKALELI 284
                      T + G  +V              VA +M       P   E  ++   ++
Sbjct: 209 GLGKGATIAHKTGDIGI-VVGDAGMVDMPNGQRYVAAMMVKRPYNDPRGSELIRQVSRMV 267

Query: 285 TSFLEKKTLKHQQTHRKDNLSST 307
               EK +   Q+   +++L+S 
Sbjct: 268 YQAFEKLSPPEQKLISEEDLNSA 290


>gi|323691461|ref|ZP_08105733.1| hypothetical protein HMPREF9475_00595 [Clostridium symbiosum
           WAL-14673]
 gi|323504507|gb|EGB20297.1| hypothetical protein HMPREF9475_00595 [Clostridium symbiosum
           WAL-14673]
          Length = 252

 Score = 59.1 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 98/255 (38%), Gaps = 48/255 (18%)

Query: 56  SIVI-DVNKNQMTGFKQDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +IVI D+   +     +DE    ASL K  +++    F   +  ++ L+ +I + +  + 
Sbjct: 15  AIVIEDLKTGEAVEINRDEVFPAASLIKVPVLSAL--FRMAKENQIALDERIEL-EKDSR 71

Query: 113 QNPSKL--YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                +   L +          + +IT S N  +    + I  S+      ++++ + +G
Sbjct: 72  IGGFGILKDLGDGLNPAVRDLAVLMITLSDNIAANLLIDRIGMSQ------INSELQAMG 125

Query: 171 MQNTIYKNAS--------GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
           M++T+ +           GL      T+A D   L   +     +      I    +R +
Sbjct: 126 MKHTVLQRKMMDSQAKERGLD---NYTSAGDMQKLMKAIL----ESSFRGDILDILFRQQ 178

Query: 223 IITNHNKLLNKMHN--IDGIKTGYTR----NSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
               +NKL   M        KTG       ++G  I+ +    D  I+A+V+    +  R
Sbjct: 179 C---NNKLPALMEGGVRFAHKTGDLPGVEHDAG--IICT---DDREIIAIVLTDELADNR 230

Query: 277 -----DQKALELITS 286
                +Q+  +LI S
Sbjct: 231 EGIWLNQEIGKLINS 245


>gi|298492563|ref|YP_003722740.1| beta-lactamase ['Nostoc azollae' 0708]
 gi|298234481|gb|ADI65617.1| beta-lactamase ['Nostoc azollae' 0708]
          Length = 508

 Score = 59.1 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 64/166 (38%), Gaps = 14/166 (8%)

Query: 39  IIMISMASELHAKPKYSSI----VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQ 94
           II ++   +  A+P  + I    ++D++         +     AS  K+  L   F+ + 
Sbjct: 186 IIPLTTTVQNLARPYPNLIPGVFMVDLDTGAYVDINSNASFPAASTIKIPILITFFQDVD 245

Query: 95  SKKLHLNTQIPVSKTAATQN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           + K+ L+  + + K   ++   S       + +T       +IT S N  +      + G
Sbjct: 246 AGKIRLDEMLTLQKEMISEGSGSLRTQAVGSQYTALDIATKMITISDNTATNMLVTRLGG 305

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHD--KNQITTARDQAIL 197
            E     +++ + +  G+  T+ +N   L D       + R+   L
Sbjct: 306 QE-----VLNERFRSWGLATTMIRNP--LPDLQGTNTISPRELGDL 344


>gi|23100527|ref|NP_693994.1| beta-lactamase [Oceanobacillus iheyensis HTE831]
 gi|22778760|dbj|BAC15028.1| beta-lactamase [Oceanobacillus iheyensis HTE831]
          Length = 264

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 82/222 (36%), Gaps = 23/222 (10%)

Query: 35  LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQ 94
           + L +I  ++++   A P   SI++  N   +   K+ +    AS+ K+  L   +   +
Sbjct: 1   MSLRMIETALSAIKPAPPVSVSIIVKTNNG-IIRSKETKQMRSASIIKLFILASAYHLKE 59

Query: 95  SKKLHLNTQIPVSKTAATQNPSKL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             K+ L  QI +S     Q    + YL +  + T +Q +  +I  S N  S    E +  
Sbjct: 60  KGKISLTDQIKLSSNDFVQGSGVISYLSDVKFLTYQQLLELMIIVSDNTASNYLIERLGI 119

Query: 154 SE-KKFAILMSNKAKKIGMQNTI----YKNASGLH-DKNQITTARDQAILGILLR----- 202
            E + F          +G Q T     + +       K  +T+A D   L  +       
Sbjct: 120 PEIQAFIE-------NLGCQQTRLERKFMDIEAQKLGKENVTSALDVIRLFDIFTEKNNF 172

Query: 203 ---KNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIK 241
              K+          ++F  +    T +N L+   H    +K
Sbjct: 173 LGEKSQQHILSILKNQQFNSKLTAYTEYNPLVTSYHKSGELK 214


>gi|266619200|ref|ZP_06112135.1| beta-lactamase [Clostridium hathewayi DSM 13479]
 gi|288869291|gb|EFD01590.1| beta-lactamase [Clostridium hathewayi DSM 13479]
          Length = 281

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 49/143 (34%), Gaps = 13/143 (9%)

Query: 64  NQMTGFKQDEPRYPASLTKMMTLYII--FEYLQSKKLHLNTQIPVSK-TAATQNPSKLYL 120
             +     DEP   AS  K  T  +   F+ ++  K  L   +   +      +     L
Sbjct: 31  GNIIAIGADEPFETASTIK--TYILACLFDQVEKGKASLEDMVEYKEEHTVDGSGVLCAL 88

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           +       +     +I  S N  +    +++          ++   + +G ++T+  N  
Sbjct: 89  EPGAVLRVKDAATLMIIVSDNVATNMMIDYLG------LDTINACIRGLGCRDTVLYNPL 142

Query: 181 GL--HDKNQITTARDQAILGILL 201
               +DK   +T RD A +   L
Sbjct: 143 HFERYDKLGTSTPRDYASIFTRL 165


>gi|218437495|ref|YP_002375824.1| beta-lactamase protein [Cyanothece sp. PCC 7424]
 gi|218170223|gb|ACK68956.1| putative beta-lactamase protein [Cyanothece sp. PCC 7424]
          Length = 440

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 54/141 (38%), Gaps = 8/141 (5%)

Query: 59  IDVNKNQMTGFKQDEPRYPASLTKMMTLYIIF-EYLQSKKLHLNTQIPVSKTAATQNPSK 117
           +D++           P   AS  K+  + + F E + + K++L+ ++ ++K         
Sbjct: 164 VDLDNGAYIDVNGQAPFSAASTIKI-PVLVAFFEDVDAGKIYLDEELVMTKDVIGSGSGD 222

Query: 118 LYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
           +  +     ++  +    +   S N  +    + + G E      ++ + K  G+  T+ 
Sbjct: 223 MQYQPVGKKYSALETAAKMNIISDNTATNMLIKRLGGKEA-----LNERFKAWGLTQTVI 277

Query: 177 KNASGLHDKNQITTARDQAIL 197
            N     +    T+ RD A L
Sbjct: 278 NNPLPDLEGTNTTSPRDLAYL 298


>gi|332716170|ref|YP_004443636.1| beta-lactamase [Agrobacterium sp. H13-3]
 gi|325062855|gb|ADY66545.1| beta-lactamase [Agrobacterium sp. H13-3]
          Length = 280

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 53/152 (34%), Gaps = 20/152 (13%)

Query: 63  KNQMTGFKQDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY- 119
             +  G  ++E     S  K  +M    + +     +L L+  +   K  A +  S ++ 
Sbjct: 27  SGEEIGRGENEETPSGSTRKTSIMMA--VLKAASEGRLDLDQPVTYEKRLAEEVASGMFR 84

Query: 120 -LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK- 177
            L      +    +  ++  S N  +    E ++         + +  K +GM NT ++ 
Sbjct: 85  YLTPGIVISLRDALAGMMVLSDNVCTKMVLERLT------LEEVDSYCKTLGMANTHHRF 138

Query: 178 --NASGLHDKN-----QITTARDQAILGILLR 202
                 L   +       T+A DQ +L   + 
Sbjct: 139 LIPPLALAADHPLKTVTTTSAADQVLLLQTIL 170


>gi|271962984|ref|YP_003337180.1| beta-lactamase [Streptosporangium roseum DSM 43021]
 gi|270506159|gb|ACZ84437.1| beta-lactamase [Streptosporangium roseum DSM 43021]
          Length = 283

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 17/152 (11%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYII--FEYLQSKKLHLNTQIPVSKTAATQNP 115
            +DV+         DEP   AS+ K+    ++  F    + +L +  ++ V     T  P
Sbjct: 19  AVDVDTGAEVAHGADEPVVMASVFKL--ALLVEFFRQADAGRLDVTERVTVMADRHTPGP 76

Query: 116 SKLYLKEKT-YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           + +         +       +I  S N  + A    +  S       ++      G+  T
Sbjct: 77  TGVSAMADDVTMSLRDLAYLMIAVSDNTAADALIGRVGLS------AVNTMLAAEGLDGT 130

Query: 175 IYKN------ASGLHDKNQITTARDQAILGIL 200
             ++      AS + D  Q     D A++  L
Sbjct: 131 WVEHDCRSLFASIVEDAGQEEMPTDPAVIARL 162


>gi|160285591|pdb|2J7V|A Chain A, Structure Of Pbp-A
 gi|160285592|pdb|2J7V|B Chain B, Structure Of Pbp-A
 gi|160285593|pdb|2J7V|C Chain C, Structure Of Pbp-A
 gi|160285594|pdb|2J7V|D Chain D, Structure Of Pbp-A
 gi|161172129|pdb|2J8Y|A Chain A, Structure Of Pbp-A Acyl-Enzyme Complex With Penicillin-G
 gi|161172130|pdb|2J8Y|B Chain B, Structure Of Pbp-A Acyl-Enzyme Complex With Penicillin-G
 gi|161172131|pdb|2J8Y|C Chain C, Structure Of Pbp-A Acyl-Enzyme Complex With Penicillin-G
 gi|161172132|pdb|2J8Y|D Chain D, Structure Of Pbp-A Acyl-Enzyme Complex With Penicillin-G
          Length = 298

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 95/265 (35%), Gaps = 35/265 (13%)

Query: 61  VNKNQMTGFKQDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK 117
           ++         D+    AS  K  ++  +  F+ +   ++ L  ++ +     A +  + 
Sbjct: 43  LDSGASLNVGGDQVFPAASTIKFPILVAF--FKAVDEGRVTLQERLTMRPDLIAPEAGTL 100

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
            Y K  + +   +    +IT S N  +    + + G     A  ++ + ++ G++NT+  
Sbjct: 101 QYQKPNSQYAALEVAELMITISDNTATNMIIDRLGG-----AAELNQQFQEWGLENTVIN 155

Query: 178 NASGLHD--KNQITTARDQAILGILLRKNFPQYYKYFSIRK----FRYRNRIITNHNKLL 231
           N   L D      T+ RD A L + + +      +  S R          R +TN   LL
Sbjct: 156 NP--LPDMKGTNTTSPRDLATLMLKIGQ-----GEILSPRSRDRLLDIMRRTVTNT--LL 206

Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRY----KDDPIVAVVM-----GMPTSQERDQKALE 282
                        T + G  +V              VA +M       P   E  ++   
Sbjct: 207 PAGLGKGATIAHKTGDIGI-VVGDAGMVDMPNGQRYVAAMMVKRPYNDPRGSELIRQVSR 265

Query: 283 LITSFLEKKTLKHQQTHRKDNLSST 307
           ++    EK +   Q+   +++L+S 
Sbjct: 266 MVYQAFEKLSPPEQKLISEEDLNSA 290


>gi|159185716|ref|NP_357228.2| beta-lactamase [Agrobacterium tumefaciens str. C58]
 gi|159140850|gb|AAK90013.2| beta-lactamase [Agrobacterium tumefaciens str. C58]
          Length = 282

 Score = 57.6 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 52/152 (34%), Gaps = 20/152 (13%)

Query: 63  KNQMTGFKQDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY- 119
             +  G  ++E     S  K  +M    + +     ++ L+  +   K  A +  S ++ 
Sbjct: 29  TGEEIGRGENEETPSGSTRKTSIMMA--VLKAASEGRIDLDQPVTYEKRLAEEVASGMFR 86

Query: 120 -LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK- 177
            +      +    I  ++  S N  +    E ++         +    K +GM NT ++ 
Sbjct: 87  YMTPGIVISLRDAIAGMMVLSDNVCTKMVLERLT------LEEVDGYCKSLGMANTHHRF 140

Query: 178 --NASGLHDKN-----QITTARDQAILGILLR 202
                 L   +       T+A DQ +L   + 
Sbjct: 141 LIPPLALAADHPLKTVTTTSAADQVLLLQTIL 172


>gi|220906580|ref|YP_002481891.1| beta-lactamase [Cyanothece sp. PCC 7425]
 gi|219863191|gb|ACL43530.1| putative beta-lactamase [Cyanothece sp. PCC 7425]
          Length = 423

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 77/192 (40%), Gaps = 25/192 (13%)

Query: 47  ELHAKP--KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYII--FEYLQSKKLHLNT 102
           E+ A+P     +  ++++               AS  K  T  ++  F+ + + K+ L+ 
Sbjct: 142 EIAARPGLTAGAFFLNLDTGAYADVNGAATFPAASTIK--TPILVAFFQDVDAGKIKLDE 199

Query: 103 QIPVSKTA-ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
           ++ +     A++     Y K  T F+  +    +IT S N  +    + + G     A  
Sbjct: 200 RLVMRPDLIASEAGIMQYQKPGTKFSALETADLMITISDNTATNMLIDRLGG-----AAA 254

Query: 162 MSNKAKKIGMQNTIYKNASGLHD--KNQITTARDQAILGILLRKNFPQYYKYFSIRK--- 216
           ++ +    G+Q T+ +N   L D      T+A+D A L +L+ +         S+R    
Sbjct: 255 LNQRFLSWGLQQTVIRNW--LPDLKGTNTTSAKDLAYLMMLVGR-----GDLVSVRSRDR 307

Query: 217 -FRYRNRIITNH 227
                +R +TN 
Sbjct: 308 LLDIMHRTVTNT 319


>gi|329897122|ref|ZP_08271866.1| Beta-lactamase [gamma proteobacterium IMCC3088]
 gi|328921414|gb|EGG28804.1| Beta-lactamase [gamma proteobacterium IMCC3088]
          Length = 332

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 42/118 (35%), Gaps = 7/118 (5%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA--TQNPSK 117
           D+          DEP   AS  K+     +   +   +L+L   + +  +    +Q  + 
Sbjct: 60  DMTTGAQIFLNGDEPFPMASTYKIAIAMTLLAKVDHGELNLTDMVDIDDSEWVYSQVIAA 119

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
            ++ +    +    +  +IT+S N  +      ++G        ++    ++G+    
Sbjct: 120 NFIHQGVSLSIANLLEVMITQSDNTATD-ICLRLAGGPSA----VNQYLGQLGIDGMR 172


>gi|290890592|ref|ZP_06553663.1| hypothetical protein AWRIB429_1053 [Oenococcus oeni AWRIB429]
 gi|290479720|gb|EFD88373.1| hypothetical protein AWRIB429_1053 [Oenococcus oeni AWRIB429]
          Length = 264

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 82/187 (43%), Gaps = 12/187 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPAS-LTKMMTLYIIFEYLQSKKLHLNTQIPVSKT-- 109
             SS+  ++N  ++   K     +P S L++++ +Y +   ++SKK+ L+T + VS+   
Sbjct: 8   AQSSLFAELN-GKIISKKNVRKTFPISDLSRLVLIYEVLSAIRSKKISLDTPLIVSEKIS 66

Query: 110 --AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
             +     + ++ +   +FT +Q I  L+  S    +    E I G+ +K+    +   K
Sbjct: 67  LFSKKDRSAAMHFQIGEFFTVKQAIEILLIMSEKSAAYLLIEKIFGNLEKWRSETARFLK 126

Query: 168 KIGMQNTIYKNASGL---HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--R 222
           +  +   IY    GL     +  + +A     +   L  +FP+       ++F +++  +
Sbjct: 127 QEKIDGLIY-EPVGLMSGEGRENLLSAISILKVINKLVNDFPKILAMTQKKQFIFQSDRQ 185

Query: 223 IITNHNK 229
           +    N 
Sbjct: 186 VQFYRNP 192


>gi|118586937|ref|ZP_01544370.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni ATCC BAA-1163]
 gi|118432664|gb|EAV39397.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni ATCC BAA-1163]
          Length = 264

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 82/187 (43%), Gaps = 12/187 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPAS-LTKMMTLYIIFEYLQSKKLHLNTQIPVSKT-- 109
             SS+  ++N  ++   K     +P S L++++ +Y +   ++SKK+ L+T + VS+   
Sbjct: 8   AQSSLFAELN-GKIISKKNVRKTFPISDLSRLVLIYEVLSAIRSKKISLDTPLIVSEKIS 66

Query: 110 --AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
             +     + ++ +   +FT +Q I  L+  S    +    E I G+ +K+    +   K
Sbjct: 67  LFSKKDRSAAMHFQIGEFFTVKQAIEILLIMSEKSAAYLLIEKIFGNLEKWRSETARFLK 126

Query: 168 KIGMQNTIYKNASGL---HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--R 222
           +  +   IY    GL     +  + +A     +   L  +FP+       ++F +++  +
Sbjct: 127 QEKIDGLIY-EPVGLMSGEGRENLLSAISILKVINKLVNDFPKILAMTQKKQFIFQSDRQ 185

Query: 223 IITNHNK 229
           +    N 
Sbjct: 186 VQFYRNP 192


>gi|158334967|ref|YP_001516139.1| beta-lactamase [Acaryochloris marina MBIC11017]
 gi|158305208|gb|ABW26825.1| beta-lactamase, putative [Acaryochloris marina MBIC11017]
          Length = 277

 Score = 57.2 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 56/144 (38%), Gaps = 6/144 (4%)

Query: 62  NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT-AATQNPSKLYL 120
           +  +       +    AS  K+  L   FE + +  + L+  + +     A++  S  Y 
Sbjct: 38  STGEYLDINGAKSISAASTIKIPVLLAFFEDVDAGIIDLDEPLVMRPDLVASEAGSMQYE 97

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
              T F+       +I  S N  +    + + G+EK     ++ + K  G+++T  +N  
Sbjct: 98  PVGTTFSALDTAEYMIAISDNTATNMLIDRLGGAEK-----LNQRFKSWGLKHTTIRNPL 152

Query: 181 GLHDKNQITTARDQAILGILLRKN 204
              +     + +D A L + L+  
Sbjct: 153 PDLEGTNTISPQDMAALMLKLKDE 176


>gi|186682632|ref|YP_001865828.1| beta-lactamase [Nostoc punctiforme PCC 73102]
 gi|186465084|gb|ACC80885.1| beta-lactamase [Nostoc punctiforme PCC 73102]
          Length = 520

 Score = 57.2 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 58/150 (38%), Gaps = 12/150 (8%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIF-EYLQSKKLHLNTQIPVSKTAATQNPS 116
           ++D++               AS  K+  + + F + + + K+ L+  + + +        
Sbjct: 215 LVDLDTGNYVDVNGSTSFPAASTIKV-PILLAFFQDVDAGKIRLDEMLTMQQDMVAGGSG 273

Query: 117 KLYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
            +  K   T +   + +  +IT S N  +      + G E      ++ + +  G+  T 
Sbjct: 274 DMGSKPAGTKYNALEVVTKMITISDNTATNMLIARLGGMEA-----LNQRFRTWGLTTTT 328

Query: 176 YKNASGLHD--KNQITTARDQAILGILLRK 203
            +N+  L D      T+ ++ A L  ++ +
Sbjct: 329 IRNS--LPDLQGTNTTSPKELANLMAIVSQ 356


>gi|320333694|ref|YP_004170405.1| beta-lactamase [Deinococcus maricopensis DSM 21211]
 gi|319754983|gb|ADV66740.1| beta-lactamase [Deinococcus maricopensis DSM 21211]
          Length = 288

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 23/167 (13%)

Query: 52  PKYSSIVI-DVNKNQMTGFKQDEPRYPA-SLTKMMTLYI-IFEYLQSKKLHLNTQIPVSK 108
           P  +++V+ D+++ +     Q    +PA S  K+  L +   + +Q+  L+L  ++PV  
Sbjct: 20  PGVAALVVEDLHRGERLVELQGARAFPAASTIKV-PLLVHALQRVQAGALNLGARVPVPA 78

Query: 109 TAATQNPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKA 166
            A     + +   L      T    +  +I  S N  +    + +   E  F    +   
Sbjct: 79  DA-RVPGAGVLHELDGGLAPTVRDLLTLMIVVSDNTATNLVIDLLG--EAAF----NAWL 131

Query: 167 KKIGMQNTIYKN----ASGLHDKNQ------ITTARDQAILGILLRK 203
           +  G++ T           L +  Q       T A DQ  L   L +
Sbjct: 132 QAEGLRGTHLVGPLQRPPHLQNPAQRRGERNRTCADDQVTLLSRLAR 178


>gi|313888977|ref|ZP_07822636.1| conserved hypothetical protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312844963|gb|EFR32365.1| conserved hypothetical protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 262

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 44/117 (37%), Gaps = 9/117 (7%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119
           D++  +      D+    AS+ K++ L   F+     KL+L   I +       + S + 
Sbjct: 28  DLDLGEGFSINGDQQVPSASMIKLLILLKAFDECDKGKLNLEDTISLDDY-ERVDGSGIL 86

Query: 120 --LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
             L     F+  + +  +I  S N  +    + +   E      ++    + G++ T
Sbjct: 87  KELYRNHKFSIRELLTLMIIVSDNTATNILIDLLGREE------INKIGHEFGLEKT 137


>gi|300854825|ref|YP_003779809.1| putative beta-lactamase [Clostridium ljungdahlii DSM 13528]
 gi|300434940|gb|ADK14707.1| putative beta-lactamase [Clostridium ljungdahlii DSM 13528]
          Length = 257

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 63/156 (40%), Gaps = 16/156 (10%)

Query: 56  SIVID-VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           + VI+ +   +   + ++     ASL K+  +  I   ++  KL L  +I V +      
Sbjct: 18  AFVIENLKTGEKIAYNENVVVSSASLIKIPIMMEILNQVKEGKLSLKQRITV-EDDVKVP 76

Query: 115 PSKLYL-KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
            S L L +    +T +  I  +I +S N  +      ++G        ++N  K + ++N
Sbjct: 77  FSILNLLESGNSYTLKDVITLMIIQSDNTAANIL-MDLAG-----MDNVNNYIKDLEIKN 130

Query: 174 TIYKNASGLHDK------NQITTARDQAILGILLRK 203
           T+ +    L  K         TTA D A    ++ K
Sbjct: 131 TVLQRKM-LDSKARKEGRENKTTAADMAKFFEIIYK 165


>gi|171778207|ref|ZP_02919436.1| hypothetical protein STRINF_00275 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283031|gb|EDT48455.1| hypothetical protein STRINF_00275 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 428

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 64/167 (38%), Gaps = 21/167 (12%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPS 116
           ++  +  G   D   Y AS+ K+ TLY + E +Q   + ++ ++  +      A   NPS
Sbjct: 213 LSTQETAGINPDTTMYAASVAKLATLYYVEEKIQDGSVKMDDKLKYTADVNTFAKAYNPS 272

Query: 117 KLYLKEKTY----FTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGM 171
                 KT     ++ E  + A+   S N  +   G +++    + F   +S       +
Sbjct: 273 GSGKISKTVDNKDYSVEDLLKAVCQNSDNVATNILGYYVAKQYGEHFTSDISA------V 326

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
            NT +        K +  +++  A L   + +   +   Y S   F 
Sbjct: 327 TNTNF------DMKTRQMSSKTAADLMEAIYQQNGEIISYLSSTAFD 367


>gi|302525844|ref|ZP_07278186.1| beta-lactamase [Streptomyces sp. AA4]
 gi|302434739|gb|EFL06555.1| beta-lactamase [Streptomyces sp. AA4]
          Length = 271

 Score = 56.4 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 50/152 (32%), Gaps = 24/152 (15%)

Query: 63  KNQMTGFKQDEPRY--PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
             ++ G   D  R    AS+TK++T Y     ++   + L+T       A  +  +  +L
Sbjct: 23  SGEVRGRHGDPARPFRLASVTKLLTAYAAHIAIEEGVVELDTP------AGPEGSTVAHL 76

Query: 121 KEKTYFTTEQGILALI------TRSAN---DVSTAFGEFISGSEKKFAILMSNKAKK-IG 170
              T         A+         S     +++ A  E    S   FA        + +G
Sbjct: 77  LAHTSGLAFDAHKAMAEPGTRRLYSNAGFEELADALAEH---SGIAFAEYQREALFEPLG 133

Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLR 202
           M +T      G      ++T  D       L+
Sbjct: 134 MTSTHL---DGSPAAGAVSTVDDLLRFAAELQ 162


>gi|116491089|ref|YP_810633.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni PSU-1]
 gi|116091814|gb|ABJ56968.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni PSU-1]
          Length = 249

 Score = 56.4 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 82/187 (43%), Gaps = 12/187 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPAS-LTKMMTLYIIFEYLQSKKLHLNTQIPVSKT-- 109
             SS+  ++N  ++   K     +P S L++++ +Y +   ++SKK+ L+T + VS+   
Sbjct: 8   AQSSLFAELN-GKIISKKNVRKTFPISDLSRLVLIYEVLSAIRSKKISLDTPLIVSEKIS 66

Query: 110 --AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
             +     + ++ +   +FT +Q I  L+  S    +    E I G+ +K+    +   K
Sbjct: 67  LFSKKDRSAAMHFQIGEFFTVKQAIEILLIMSEKSAAYLLIEKIFGNLEKWRSETARFLK 126

Query: 168 KIGMQNTIYKNASGL---HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN--R 222
           +  +   IY    GL     +  + +A     +   L  +FP+       ++F +++  +
Sbjct: 127 QEKIDGLIY-EPVGLMSGEGRENLLSAISILKVINKLVNDFPKILAMTQKKQFIFQSDRQ 185

Query: 223 IITNHNK 229
           +    N 
Sbjct: 186 VQFYRNP 192


>gi|255524822|ref|ZP_05391772.1| beta-lactamase [Clostridium carboxidivorans P7]
 gi|296188641|ref|ZP_06857029.1| hypothetical protein CLCAR_4177 [Clostridium carboxidivorans P7]
 gi|255511489|gb|EET87779.1| beta-lactamase [Clostridium carboxidivorans P7]
 gi|296046905|gb|EFG86351.1| hypothetical protein CLCAR_4177 [Clostridium carboxidivorans P7]
          Length = 259

 Score = 56.4 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 58/151 (38%), Gaps = 9/151 (5%)

Query: 49  HAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPV 106
           +++ KYS  V ++   +       E    AS+ K  +M+    F   +  KL+L+  I +
Sbjct: 12  NSEAKYSLAVKNLRSKENCYINTHEVVPSASIIKLFIMSE--AFNKNKMGKLNLHEIIKI 69

Query: 107 SKTAATQNPSKL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSN 164
                    S +  L     ++ +  I  +I +S N  +    +F+   +   F      
Sbjct: 70  D-NDKKVPFSIVSLLNSVEQYSVKDLITLMIIQSDNTATNVLIDFLGIDNINNFIKERGF 128

Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           K   +G +   ++ A     K+  T+A D  
Sbjct: 129 KNTVLGRKMMDFEGAK--AGKDNYTSAYDVF 157


>gi|256374311|ref|YP_003097971.1| beta-lactamase [Actinosynnema mirum DSM 43827]
 gi|255918614|gb|ACU34125.1| beta-lactamase [Actinosynnema mirum DSM 43827]
          Length = 271

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 19/163 (11%)

Query: 47  ELHAKPKYSSIVIDVNK-NQMTGFKQD-EPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQ 103
            +   P  S+ V  V+   ++ G   D E RYP AS+TK++T Y +   ++   +  +  
Sbjct: 6   AVSQWPVDSAAVAAVSSDGRVLGSHGDLERRYPLASVTKLLTSYAVLVAVEEGAVEWDDP 65

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS-----ANDVSTAFGEFISGSEK-K 157
                 A  +  +  +L   T                    +N       + +  S    
Sbjct: 66  ------AGPEGSTVRHLIAHTSGLAFDSDKVQAAPGERRIYSNRGFEVLADAVERSSGIA 119

Query: 158 FAILMSNKAKK-IGMQNTIYKNASGLHDKNQITTARDQAILGI 199
           F   ++      +GM +T      G      ++T  D      
Sbjct: 120 FGDYLAEAVLGPLGMGST---ALEGSPAAGGVSTVADLVAFAA 159


>gi|225175816|ref|ZP_03729809.1| Beta-lactamase class A-like protein [Dethiobacter alkaliphilus AHT
           1]
 gi|225168740|gb|EEG77541.1| Beta-lactamase class A-like protein [Dethiobacter alkaliphilus AHT
           1]
          Length = 356

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 17/125 (13%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYII--FEYLQSKKLHLNTQIPV---SKTAATQN 114
           D    +      D   +PAS+ K  TLY+    E ++ ++  L+ +  +    K A +  
Sbjct: 113 DFATGETLSHNGDRVIFPASMIK--TLYLAVFLEEVKHERQSLDAEYILQQRDKYAGSTI 170

Query: 115 PSKLYL----KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
              + L       T  T  + +  ++  S N  +      +      F   ++++ K+ G
Sbjct: 171 VGGMGLLQYEPSGTKVTHAELLSLMVAESDNVATNIITNILG-----F-QHINDRIKEYG 224

Query: 171 MQNTI 175
           ++NT 
Sbjct: 225 LKNTR 229


>gi|55822068|ref|YP_140509.1| D-alanyl-D-alanine carboxypeptidase, truncated [Streptococcus
           thermophilus CNRZ1066]
 gi|55738053|gb|AAV61694.1| D-alanyl-D-alanine carboxypeptidase, truncated [Streptococcus
           thermophilus CNRZ1066]
          Length = 189

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 8/106 (7%)

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD-------QKALELITSF 287
             +DG++TG T  +G + V         I+ V++    +   D        + L  +   
Sbjct: 10  KGVDGLQTGTTDLAGSSFVAHSNESGMSIITVIINAEHTDTDDYAWFTATNELLNYVVYH 69

Query: 288 LEKKTL-KHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
            E KT+ K  Q   K  +     K   +    K  ++  +KIDA  
Sbjct: 70  WESKTIAKKGQAISKSQVDVLDGKSKQVSAVAKSDFNIIQKIDANN 115


>gi|120608890|ref|YP_968568.1| beta-lactamase [Acidovorax citrulli AAC00-1]
 gi|120587354|gb|ABM30794.1| beta-lactamase [Acidovorax citrulli AAC00-1]
          Length = 327

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 48/125 (38%), Gaps = 12/125 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
           ++  +   ++ D   Y AS  K+     + + +Q  +L L+ ++ V +      + + ++
Sbjct: 19  LDNGETFAWQADRRWYLASSAKLPLAIAVLQEVQQGRLRLDQELRVEERDKIDGSGALVW 78

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI-GMQN----T 174
               T  + E  +  ++  S N  +      I      F    + +A+ + G +N    T
Sbjct: 79  QPVGTQHSVETLLRRMLMDSDNTAANLLIRTIG--PDTF----NTRARALMGARNVGPLT 132

Query: 175 IYKNA 179
            +   
Sbjct: 133 NFTQV 137


>gi|319786192|ref|YP_004145667.1| beta-lactamase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464704|gb|ADV26436.1| Beta-lactamase [Pseudoxanthomonas suwonensis 11-1]
          Length = 306

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 1/109 (0%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           E  A+ +    V+D    +  G  + E R+P  S  K M    +        L L+ ++P
Sbjct: 51  EAAAQGRLGVAVLDAGSGRHLGGHRPEERFPMCSTFKAMLSAAVLAQADRGALSLDERLP 110

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
           V +     +            T      A +T S N  +      I G+
Sbjct: 111 VGEADIVSHSPVTRRHVGKDVTVRDLCRATMTTSDNGAANLLLGRIGGT 159


>gi|87124814|ref|ZP_01080662.1| putative beta-lactamase [Synechococcus sp. RS9917]
 gi|86167693|gb|EAQ68952.1| putative beta-lactamase [Synechococcus sp. RS9917]
          Length = 385

 Score = 56.0 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 14/147 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMT--LYIIFEYLQSKKLHLNTQIPVSKTA 110
           + S+ ++ ++  +      D     AS  K  T  L +  E L +  L  N  + +SKT 
Sbjct: 112 QASAFLLKLDDGRYAELSPDTALPAASSIK--TPILLVALELLDAGDLSWNEPLTLSKTT 169

Query: 111 ATQNPSKLYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                  +  K   + F T +    +I  S N  +    E + G E     L++ +   +
Sbjct: 170 VGGGAGWMASKPLGSRFPTHEVATEMIRVSDNTATNLLIERVGGKE-----LLNERFNAL 224

Query: 170 GMQNTIYKNASGLHD--KNQITTARDQ 194
           G+  T     + L D      T+ARD 
Sbjct: 225 GLSAT--VVNNWLPDLEGTNTTSARDL 249


>gi|76799931|ref|ZP_00781932.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
           agalactiae 18RS21]
 gi|76584715|gb|EAO61472.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
           agalactiae 18RS21]
          Length = 188

 Score = 56.0 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 8/104 (7%)

Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM----PTSQERDQKALELITSFLEK 290
             I G+KTG T  +G + + +       ++ V+M           R      L+      
Sbjct: 10  PGITGLKTGTTELAGQSFIATSTESGMRLLTVIMHADKADKDKYARFTATNSLLNYITNT 69

Query: 291 K----TLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDA 330
                 L     ++    S    K+  +I   K      +K + 
Sbjct: 70  YEPNLVLAKGAAYKGKEASVRDGKEQSVIAVAKNDLKVVQKKNI 113


>gi|51891859|ref|YP_074550.1| putative beta-lactamase [Symbiobacterium thermophilum IAM 14863]
 gi|51855548|dbj|BAD39706.1| putative beta-lactamase [Symbiobacterium thermophilum IAM 14863]
          Length = 259

 Score = 56.0 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 33/104 (31%), Gaps = 2/104 (1%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
             +YS  + D+   Q      D   +PAS  K+       E  ++ K+     I  ++  
Sbjct: 5   PGEYSVALEDLLTGQRWLHNADRLYHPASTVKVPVALYALEQYRAGKIGWGDLIEYTEAD 64

Query: 111 ATQNPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
                +  +   +    +  +  +   +  S N      G  + 
Sbjct: 65  VEPPLTGAFEAAEFGDLYPVQDLVHWALAYSDNVAVNMLGRRLG 108


>gi|254514620|ref|ZP_05126681.1| beta-lactamase [gamma proteobacterium NOR5-3]
 gi|219676863|gb|EED33228.1| beta-lactamase [gamma proteobacterium NOR5-3]
          Length = 334

 Score = 56.0 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 42/114 (36%), Gaps = 8/114 (7%)

Query: 64  NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA--TQNPSKLYLK 121
            ++     DEP   AS  K+     +   +   +L L+  +PV   A   +Q  +  +  
Sbjct: 65  GRILV-NADEPFPMASTYKIPIAITLLRRIDQGELRLDQLVPVPDEAVVFSQIIASAFPH 123

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
                +    I  +IT S N  +      ++G  +     ++   + +G+Q   
Sbjct: 124 SGVTISVANLIEVMITYSDNTATD-ICLELAGGPEA----VTKTMRSLGIQGLH 172


>gi|51893570|ref|YP_076261.1| putative beta-lactamase [Symbiobacterium thermophilum IAM 14863]
 gi|51857259|dbj|BAD41417.1| putative beta-lactamase [Symbiobacterium thermophilum IAM 14863]
          Length = 301

 Score = 56.0 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 78/221 (35%), Gaps = 30/221 (13%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL- 118
           D++ ++  G + DE    AS  K++    ++    + ++ L+  + +       + S + 
Sbjct: 67  DLSTHETFGVRADEVYTAASTVKVLIANYLYHLAATGQVSLDEPLAIRAVDWK-DGSGIL 125

Query: 119 -YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ-NTIY 176
             + + T     +    ++  S N  + A    +          M    + +G++  T  
Sbjct: 126 NGVPDGTRLPLREVARLMLVHSDNTAANALMRRLG------VQPMVQYYRSLGIRYGTPR 179

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNF-----PQYYKYFSIRKFRYRNRI---ITNHN 228
            +  G   +       D  I+   + +       P       +R+ R + RI   + +H 
Sbjct: 180 MHTPGELWEGNRIAPEDLGIVLRNIWEAARRSPEPWEELLGFMRESRSKGRIPAGLPSHV 239

Query: 229 KLLNKMHNIDGIK-TGYTRNSGFNIVTSLRYKDDPIVAVVM 268
            + NK     G K T +   +   +V        P V VVM
Sbjct: 240 PMANK----TGSKGTSFHDAA---LVL----DRRPYVLVVM 269


>gi|313575239|emb|CBI71182.1| beta-lactamase class A [uncultured bacterium]
          Length = 345

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 47/128 (36%), Gaps = 10/128 (7%)

Query: 38  SIIMISMASELHAKPKYS------SIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFE 91
           +    +  +EL + P+ S      +I+ D   ++       +     S+ K M+  ++  
Sbjct: 29  ATATTAPVAELDSVPQVSSGRLGVAIL-DFQTSKTYHINGKDRFPMQSVFKAMSAVVVMR 87

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKL---YLKEKTYFTTEQGILALITRSANDVSTAFG 148
            +   KL L+ +IPV     +   S +   +      +T  + +   +  S N  +    
Sbjct: 88  EVDEGKLTLDQEIPVGPDDISVYWSPIAEEFKGTTQTYTVRELLEKSVGMSDNTAADVLM 147

Query: 149 EFISGSEK 156
           E   G + 
Sbjct: 148 ELTGGPQA 155


>gi|213029379|ref|ZP_03343826.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 141

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 253 VTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
           V S    D  +++VV+G  T + R  ++ +L+T   
Sbjct: 1   VASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF 36


>gi|257055563|ref|YP_003133395.1| penicillin-binding protein, beta-lactamase class C
           [Saccharomonospora viridis DSM 43017]
 gi|256585435|gb|ACU96568.1| penicillin-binding protein, beta-lactamase class C
           [Saccharomonospora viridis DSM 43017]
          Length = 270

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 53/161 (32%), Gaps = 25/161 (15%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR-YP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           ++ V+  +   + G   D  R +P AS+TK++T Y     L+   + L+T        A 
Sbjct: 16  AAAVVKAD-GTVLGTHGDTARVFPLASVTKLLTAYTALIALEEGAVELDTP-------AG 67

Query: 113 QNPSKLYLKEKTYFTTEQGILALITR----------SANDVSTAFGEFISGSEKKFAILM 162
              S +                ++                ++ A  E    +   +    
Sbjct: 68  PEGSTIRHLLAHTSGLGFNEHKMLAEPGKRRLYSNAGFEQLADALTEHTGIAFDAYQEE- 126

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
               + +GM +T+ K   G       +T  D  +    L++
Sbjct: 127 -ALLQPLGMHDTVLK---GSPGAGAESTVDDLTLFARELQR 163


>gi|269925719|ref|YP_003322342.1| beta-lactamase [Thermobaculum terrenum ATCC BAA-798]
 gi|269789379|gb|ACZ41520.1| beta-lactamase [Thermobaculum terrenum ATCC BAA-798]
          Length = 274

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 53/155 (34%), Gaps = 20/155 (12%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           D+ + +      DE    AS+ K  +M    +F  +    + L+ ++ + +       S 
Sbjct: 23  DLTQGRELFINADETFNTASVIKVPIM--IELFRRVYEDNVSLDDRL-ILEDRFRTGGSG 79

Query: 118 LY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           +    +     T     +A+I  S N  +    +++          ++     +G  NT 
Sbjct: 80  ILKEFRSGLQLTLWDLCVAMIALSDNVATNMLIDYLG------IDAINRCMDSLGAHNTR 133

Query: 176 YKNASGLHD--KNQ-----ITTARDQAILGILLRK 203
                G      +Q      TT RD  ++   L +
Sbjct: 134 LHRMVGFKSIKPDQPKGLGRTTPRDMMMIFQKLAE 168


>gi|332363616|gb|EGJ41397.1| beta-lactamase [Streptococcus sanguinis SK1059]
          Length = 427

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 9/127 (7%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----V 106
           K  YS  V  ++  +  G  QD+  Y AS+TK+  LY + E L  KKL L+ +      V
Sbjct: 202 KADYSIYVKQLDTGKEAGINQDQEMYSASVTKLPYLYYVQEQLDQKKLSLDQKFKYIGAV 261

Query: 107 SKTAATQNPSKLYLKEKT----YFTTEQGILALITRSANDVSTAFGEF-ISGSEKKFAIL 161
           +  A    P       K+     ++ +  I  +   S N      G +  + S+K F   
Sbjct: 262 NDFAGAYEPEGSGSIAKSADDKEYSVQDLINRVAKESDNVAHNILGYYATNQSDKNFQQT 321

Query: 162 MSNKAKK 168
           ++  A K
Sbjct: 322 INKIAGK 328


>gi|332364174|gb|EGJ41951.1| beta-lactamase [Streptococcus sanguinis SK49]
          Length = 427

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 9/127 (7%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----V 106
           K  YS  V  ++  +  G  QD+  Y AS+TK+  LY + E L  KKL L+ +      V
Sbjct: 202 KADYSIYVKQLDTGKEAGINQDQEMYSASVTKLPYLYYVQEQLDQKKLSLDQKFKYIGAV 261

Query: 107 SKTAATQNPSKLYLKEKT----YFTTEQGILALITRSANDVSTAFGEF-ISGSEKKFAIL 161
           +  A    P       K+     ++ +  I  +   S N      G +  + S+K F   
Sbjct: 262 NDFAGAYEPEGSGSIAKSADDKEYSVQDLINRVAKESDNVAHNILGYYATNQSDKNFQQT 321

Query: 162 MSNKAKK 168
           ++  A K
Sbjct: 322 INKIAGK 328


>gi|328945184|gb|EGG39339.1| beta-lactamase [Streptococcus sanguinis SK1087]
          Length = 427

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 9/127 (7%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----V 106
           K  YS  V  ++  +  G  QD+  Y AS+TK+  LY + E L  KKL L+ +      V
Sbjct: 202 KADYSIYVKQLDTGKEAGINQDQEMYSASVTKLPYLYYVQEQLDQKKLSLDQKFKYIGAV 261

Query: 107 SKTAATQNPSKLYLKEKT----YFTTEQGILALITRSANDVSTAFGEF-ISGSEKKFAIL 161
           +  A    P       K+     ++ +  I  +   S N      G +  + S+K F   
Sbjct: 262 NDFAGAYEPEGSGSIAKSADDKEYSVQDLINRVAKESDNVAHNILGYYATNQSDKNFQQT 321

Query: 162 MSNKAKK 168
           ++  A K
Sbjct: 322 INKIAGK 328


>gi|327490348|gb|EGF22135.1| beta-lactamase [Streptococcus sanguinis SK1058]
          Length = 427

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 9/127 (7%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----V 106
           K  YS  V  ++  +  G  QD+  Y AS+TK+  LY + E L  KKL L+ +      V
Sbjct: 202 KADYSIYVKQLDTGKEAGINQDQEMYSASVTKLPYLYYVQEQLDQKKLSLDQKFKYIGAV 261

Query: 107 SKTAATQNPSKLYLKEKT----YFTTEQGILALITRSANDVSTAFGEF-ISGSEKKFAIL 161
           +  A    P       K+     ++ +  I  +   S N      G +  + S+K F   
Sbjct: 262 NDFAGAYEPEGSGSIAKSADDKEYSVQDLINRVAKESDNVAHNILGYYATNQSDKNFQQT 321

Query: 162 MSNKAKK 168
           ++  A K
Sbjct: 322 INKIAGK 328


>gi|327463844|gb|EGF10160.1| beta-lactamase [Streptococcus sanguinis SK1057]
 gi|327471618|gb|EGF17061.1| beta-lactamase [Streptococcus sanguinis SK408]
          Length = 427

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 9/127 (7%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----V 106
           K  YS  V  ++  +  G  QD+  Y AS+TK+  LY + E L  KKL L+ +      V
Sbjct: 202 KADYSIYVKQLDTGKEAGINQDQEMYSASVTKLPYLYYVQEQLDQKKLSLDQKFKYIGAV 261

Query: 107 SKTAATQNPSKLYLKEKT----YFTTEQGILALITRSANDVSTAFGEF-ISGSEKKFAIL 161
           +  A    P       K+     ++ +  I  +   S N      G +  + S+K F   
Sbjct: 262 NDFAGAYEPEGSGSIAKSADDKEYSVQDLINRVAKESDNVAHNILGYYATNQSDKNFQQT 321

Query: 162 MSNKAKK 168
           ++  A K
Sbjct: 322 INKIAGK 328


>gi|324991856|gb|EGC23779.1| beta-lactamase [Streptococcus sanguinis SK405]
 gi|324996254|gb|EGC28164.1| beta-lactamase [Streptococcus sanguinis SK678]
 gi|325698022|gb|EGD39903.1| beta-lactamase [Streptococcus sanguinis SK160]
 gi|327458480|gb|EGF04830.1| beta-lactamase [Streptococcus sanguinis SK1]
          Length = 427

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 9/127 (7%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----V 106
           K  YS  V  ++  +  G  QD+  Y AS+TK+  LY + E L  KKL L+ +      V
Sbjct: 202 KADYSIYVKQLDTGKEAGINQDQEMYSASVTKLPYLYYVQEQLDQKKLSLDQKFKYIGAV 261

Query: 107 SKTAATQNPSKLYLKEKT----YFTTEQGILALITRSANDVSTAFGEF-ISGSEKKFAIL 161
           +  A    P       K+     ++ +  I  +   S N      G +  + S+K F   
Sbjct: 262 NDFAGAYEPEGSGSIAKSADDKEYSVQDLINRVAKESDNVAHNILGYYATNQSDKNFQQT 321

Query: 162 MSNKAKK 168
           ++  A K
Sbjct: 322 INKIAGK 328


>gi|296141639|ref|YP_003648882.1| beta-lactamase [Tsukamurella paurometabola DSM 20162]
 gi|296029773|gb|ADG80543.1| beta-lactamase [Tsukamurella paurometabola DSM 20162]
          Length = 305

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 43/117 (36%), Gaps = 10/117 (8%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-YLKEKTYFTTEQ 130
            EP  PAS+ K++ L        S +L    ++ V    AT  P+ +    +    +   
Sbjct: 45  HEPVVPASVYKIVLLVAACRAFDSGRLDPRQRVTVDPRTATPGPTGIATFDDPVQLSVRD 104

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
              ++I  S N  +      +   E      +   A+++G++ T+     G   +  
Sbjct: 105 LARSMIAVSDNAAAGTLLSLVGLDE------VQRTARELGLRRTVIA---GGDAEMH 152


>gi|324989588|gb|EGC21534.1| beta-lactamase [Streptococcus sanguinis SK353]
 gi|325686487|gb|EGD28516.1| beta-lactamase [Streptococcus sanguinis SK72]
          Length = 427

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 9/127 (7%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----V 106
           K  YS  V  ++  +  G  QD+  Y AS+TK+  LY + E L  KKL L+ +      V
Sbjct: 202 KADYSIYVKQLDTGKEAGINQDQEMYSASVTKLPYLYYVQEQLDQKKLSLDQKFKYIGAV 261

Query: 107 SKTAATQNPSKLYLKEKT----YFTTEQGILALITRSANDVSTAFGEF-ISGSEKKFAIL 161
           +  A    P       K+     ++ +  I  +   S N      G +  + S+K F   
Sbjct: 262 NDFAGAYEPEGSGSIAKSADDKEYSVQDLINRVAKESDNVAHNILGYYATNQSDKNFQQT 321

Query: 162 MSNKAKK 168
           ++  A K
Sbjct: 322 INKIAGK 328


>gi|229824080|ref|ZP_04450149.1| hypothetical protein GCWU000282_01384 [Catonella morbi ATCC 51271]
 gi|229786434|gb|EEP22548.1| hypothetical protein GCWU000282_01384 [Catonella morbi ATCC 51271]
          Length = 347

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 54/136 (39%), Gaps = 17/136 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIP-VSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           AS+ K+  + ++ E +++++L     I  +++       +    +  T ++ E   L ++
Sbjct: 128 ASIIKLFIMQVLLEEIKAERLSWQEMITMMAEDQVGGTGNLQAAEPGTSYSLEDLALEML 187

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY--------KNASGLHDKNQI 188
             S N  +    E + G        +  K + +G Q+T            A G   +   
Sbjct: 188 IHSDNTATNLIIERLGG-----LSAVQAKIQSLGYQDTRLQRLMMDQVAIAEG---RENF 239

Query: 189 TTARDQAILGILLRKN 204
           T+AR+   L   L ++
Sbjct: 240 TSAREVGQLLAKLYQH 255


>gi|323350839|ref|ZP_08086498.1| beta-lactamase [Streptococcus sanguinis VMC66]
 gi|322123013|gb|EFX94716.1| beta-lactamase [Streptococcus sanguinis VMC66]
          Length = 427

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 9/127 (7%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----V 106
           K  YS  V  ++  +  G  QD+  Y AS+TK+  LY + E L  KKL L+ +      V
Sbjct: 202 KADYSIYVKQLDTGKEAGINQDQEMYSASVTKLPYLYYVQEQLDQKKLSLDQKFKYIGAV 261

Query: 107 SKTAATQNPSKLYLKEKT----YFTTEQGILALITRSANDVSTAFGEF-ISGSEKKFAIL 161
           +  A    P       K+     ++ +  I  +   S N      G +  + S+K F   
Sbjct: 262 NDFAGAYEPEGSGSIAKSADDKEYSVQDLINRVAKESDNVAHNILGYYATNQSDKNFQQT 321

Query: 162 MSNKAKK 168
           ++  A K
Sbjct: 322 INKIAGK 328


>gi|326315035|ref|YP_004232707.1| beta-lactamase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323371871|gb|ADX44140.1| beta-lactamase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 364

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 47/125 (37%), Gaps = 12/125 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
           ++  +   ++ D   Y AS  K+     + + +Q   L L+ ++ V +      + + ++
Sbjct: 52  LDNGETFAWEADRRWYLASSAKLPLAIAVLQEVQQGHLRLDQELRVEERDKIDGSGALVW 111

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI-GMQN----T 174
               T  + E  +  ++  S N  +      I      F    + +A+ + G +N    T
Sbjct: 112 QPVGTQHSVETLLRRMLMDSDNTAANLLIRTIG--LDTF----NTRAQALMGARNVGPLT 165

Query: 175 IYKNA 179
            +   
Sbjct: 166 NFTQV 170


>gi|125716898|ref|YP_001034031.1| Beta-lactamase class A [Streptococcus sanguinis SK36]
 gi|125496815|gb|ABN43481.1| Beta-lactamase class A, putative [Streptococcus sanguinis SK36]
          Length = 427

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 9/127 (7%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----V 106
           K  YS  V  ++  +  G  QD+  Y AS+TK+  LY + E L  KKL L+ +      V
Sbjct: 202 KADYSIYVKQLDTGKEAGINQDQEMYSASVTKLPYLYYVQEQLDQKKLSLDQKFKYIGAV 261

Query: 107 SKTAATQNPSKLYLKEKT----YFTTEQGILALITRSANDVSTAFGEF-ISGSEKKFAIL 161
           +  A    P       K+     ++ +  I  +   S N      G +  + S+K F   
Sbjct: 262 NDFAGAYEPEGSGSIAKSADDKEYSVQDLINRVAKESDNVAHNILGYYATNQSDKNFQQT 321

Query: 162 MSNKAKK 168
           ++  A K
Sbjct: 322 INKIAGK 328


>gi|85709563|ref|ZP_01040628.1| Beta-lactamase class A [Erythrobacter sp. NAP1]
 gi|85688273|gb|EAQ28277.1| Beta-lactamase class A [Erythrobacter sp. NAP1]
          Length = 340

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 89/262 (33%), Gaps = 39/262 (14%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP--VSKTAATQNP 115
            +D+   +      D+    AS +K+       E ++  K  L ++ P  +   +A  + 
Sbjct: 76  ALDLATGESVAVLGDQLFPMASTSKIAVAATYLEMVEQNKYSLTSEFPLLIPIRSAKFSS 135

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN-- 173
               ++   Y      I  +ITRS+N  + A    + G EK     +++  ++ G+ +  
Sbjct: 136 PAAPVRRGNYMPAIDLIEIMITRSSNPATDALLAAVGGPEK-----VNDWMRRQGITDFS 190

Query: 174 -----TIYKNASGLHDKNQITTARD-------QAILGILLRKNF-----PQYYKYFSIRK 216
                       G +D       RD         +L  L R +F      Q       R 
Sbjct: 191 IDRDIATLVRDDGEYDPANWIDPRDAATPRAMVRLLQGLYRGDFLSDQSRQVLLGAMSRT 250

Query: 217 FRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV---VMGMPTS 273
              R RI  N          +   KTG   N+  + +  +   D   +AV   V G  T 
Sbjct: 251 VTGRRRIPAN-----MPDEAVVSHKTGSLNNT-SSDIGIIESPDGRAIAVAIYVTGQGTR 304

Query: 274 QERDQK----ALELITSFLEKK 291
           + R+ +    A  L   F  + 
Sbjct: 305 RNREARIASIARALYDGFAARA 326


>gi|332365104|gb|EGJ42869.1| beta-lactamase [Streptococcus sanguinis SK355]
          Length = 427

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 9/127 (7%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----V 106
           K  YS  V  ++  +  G  QD+  Y AS+TK+  LY + E L  KK+ L+ +      V
Sbjct: 202 KADYSIYVKQLDTGKEAGINQDQEMYSASVTKLPYLYYVQEQLNQKKISLDQKFKYVGAV 261

Query: 107 SKTAATQNPSKLYLKEKT----YFTTEQGILALITRSANDVSTAFGEF-ISGSEKKFAIL 161
           +  A    P      EK+     ++    I  +   S N      G +  + S+K F   
Sbjct: 262 NDFAGAYEPEGSGSIEKSADDKEYSVHDLINRVAKESDNVAHNILGYYATNQSDKNFQQT 321

Query: 162 MSNKAKK 168
           ++  A K
Sbjct: 322 INKIAGK 328


>gi|304385926|ref|ZP_07368268.1| beta-lactamase class A [Pediococcus acidilactici DSM 20284]
 gi|304327986|gb|EFL95210.1| beta-lactamase class A [Pediococcus acidilactici DSM 20284]
          Length = 400

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 60/141 (42%), Gaps = 14/141 (9%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-LKEKTYFTTE 129
            D+P+  AS  K+  +   ++ ++  +L L+    ++ +       KL  + + T  + +
Sbjct: 175 NDQPQRAASDIKLFVMIAAYQQVKDGELSLSDDYTLTDSDKVDGTGKLREMADGTKISIK 234

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI----YKNASGLHD- 184
             I  ++  S N  +      + G        ++++  K+G  +T       +   L D 
Sbjct: 235 DLIGYMMEDSDNTAANIMIRKLGG-----MAAVNHQIDKMGATDTKLERMLMDTDALEDG 289

Query: 185 KNQITTARDQAILGILLRKNF 205
           K+  T+A+D   LG  L+K +
Sbjct: 290 KDNYTSAKD---LGTALKKIY 307


>gi|270289830|ref|ZP_06196056.1| beta-lactamase class A [Pediococcus acidilactici 7_4]
 gi|270281367|gb|EFA27199.1| beta-lactamase class A [Pediococcus acidilactici 7_4]
          Length = 400

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 60/141 (42%), Gaps = 14/141 (9%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-LKEKTYFTTE 129
            D+P+  AS  K+  +   ++ ++  +L L+    ++ +       KL  + + T  + +
Sbjct: 175 NDQPQRAASDIKLFVMIAAYQQVKDGELSLSDDYTLTDSDKVDGTGKLREMADGTKISIK 234

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI----YKNASGLHD- 184
             I  ++  S N  +      + G        ++++  K+G  +T       +   L D 
Sbjct: 235 DLIGYMMEDSDNTAANIMIRKLGG-----MAAVNHQIDKMGATDTKLERMLMDTDALEDG 289

Query: 185 KNQITTARDQAILGILLRKNF 205
           K+  T+A+D   LG  L+K +
Sbjct: 290 KDNYTSAKD---LGTALKKIY 307


>gi|86609350|ref|YP_478112.1| carboxylesterase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557892|gb|ABD02849.1| carboxylesterase, beta-lactamase family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 426

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 61/147 (41%), Gaps = 12/147 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYII-FEYLQSKKLHLNTQIPVSKTAATQ 113
            ++  +V      G + D+    AS+ K+  + +  F+ +++ ++ L+ Q+ + +     
Sbjct: 174 GALFWEVETGAFAGVRPDQAFPAASVIKI-PILLAFFQAVETGQVRLDEQLTLREDLKGG 232

Query: 114 NPSKLYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
               L  +   +  +  +    +IT S N  +    + + G E      ++ K ++ G+Q
Sbjct: 233 GAGVLQTRPLGSQVSALEAATLMITLSDNFATNLIIDRLGGQET-----LNQKFRQWGLQ 287

Query: 173 NTIYKNASGLHD--KNQITTARDQAIL 197
           +T    +  L D      ++ RD   L
Sbjct: 288 HTQI--SWWLPDLEGTNTSSPRDMVWL 312


>gi|317970457|ref|ZP_07971847.1| putative beta-lactamase [Synechococcus sp. CB0205]
          Length = 349

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 10/124 (8%)

Query: 74  PRYPASLTKMMT--LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKE-KTYFTTEQ 130
           P   AS  K  T  L +  E L + KL  + ++P++K         +  K   T F   +
Sbjct: 102 PLPAASSIK--TPILLVALEDLDAGKLRWDERLPMTKEVVGGGAGWMANKPVGTTFPFWE 159

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
               +I  S N  +    + + G       +++ + + +G+ +T+  N     D    T+
Sbjct: 160 AANEMIRVSDNTATNLLIKRVGGK-----AVINARFQALGLSSTVVNNWLPDLDGTNTTS 214

Query: 191 ARDQ 194
           A D 
Sbjct: 215 AYDL 218


>gi|296327729|ref|ZP_06870269.1| beta-lactamase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296155167|gb|EFG95944.1| beta-lactamase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 268

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 52/143 (36%), Gaps = 16/143 (11%)

Query: 70  KQDEPRYPASLTKMMTLYII--FEYLQSKKLHLNTQIPVSKTAATQN-PSKLYLKEKTYF 126
              E    AS+ K++   +    + +      L+  I ++    T+       L    +F
Sbjct: 42  NGSEKVLSASMIKLL--ILAELMKKVSENNFSLSDTITITNFMKTEGDGVLKELNAGHHF 99

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT----IYKNASGL 182
           T ++    +I  S N  +    +F+      F         ++G++ T       +A   
Sbjct: 100 TLKELATLMIIVSDNQATNILIDFLGMENINFLGK------ELGLRETFLERRMMDAEAS 153

Query: 183 HDK-NQITTARDQAILGILLRKN 204
            +  +  T+A D ++L  L+ + 
Sbjct: 154 KNGYDNYTSADDLSLLLKLIYQE 176


>gi|299536860|ref|ZP_07050167.1| beta-lactamase [Lysinibacillus fusiformis ZC1]
 gi|298727684|gb|EFI68252.1| beta-lactamase [Lysinibacillus fusiformis ZC1]
          Length = 270

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 13/150 (8%)

Query: 61  VNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119
           +  NQ+    Q E  +  ASL K+  L  +  Y++  KL L++ + +S T    + S + 
Sbjct: 23  LTTNQLLISHQLEASFSSASLIKVPILLALLSYIEKNKLSLDSTLTISPTDW-VDFSVIS 81

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT----I 175
            +  T  T  + ++ +I  S N  +    + +          +++  + IG+Q+T     
Sbjct: 82  EQRLTQSTFYELLVWMIITSDNTATNVLIDVVG------MAYLNDYFQHIGLQDTLLQRK 135

Query: 176 YKNASGLHDK-NQITTARDQAILGILLRKN 204
             +   L    +  T+ARD A L   + + 
Sbjct: 136 MMDVDRLAKGIDNRTSARDMAHLYTCIYQQ 165


>gi|19704905|ref|NP_602400.1| Beta-lactamase [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19712798|gb|AAL93699.1| Beta-lactamase [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 264

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 53/143 (37%), Gaps = 16/143 (11%)

Query: 70  KQDEPRYPASLTKMMTLYII--FEYLQSKKLHLNTQIPVSKTAATQN-PSKLYLKEKTYF 126
             +E    AS+ K++   +    + +   K  L+  I ++    T        L    +F
Sbjct: 38  NGNEKVLSASMIKLL--ILAELMKKVSENKFSLSDTITITNFMKTGGDGVLKELNAGHHF 95

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT----IYKNASGL 182
           T ++    +I  S N  +    +F+      F         ++G++ T       +A   
Sbjct: 96  TLKELATLMIIVSDNQATNILIDFLGMENINFLGK------ELGLRETFLERRMMDAEAS 149

Query: 183 HDK-NQITTARDQAILGILLRKN 204
            +  +  T+A D ++L  L+ + 
Sbjct: 150 KNGYDNYTSADDISLLLKLIYQE 172


>gi|22299658|ref|NP_682905.1| putative beta-lactamase [Thermosynechococcus elongatus BP-1]
 gi|22295842|dbj|BAC09667.1| tll2115 [Thermosynechococcus elongatus BP-1]
          Length = 368

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 59/146 (40%), Gaps = 14/146 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK 117
           ++         D+    AS  K  ++  +  F+ +   ++ L  ++ +     A +  + 
Sbjct: 134 LDSGASLNVGGDQVFPAASTIKFPILVAF--FKAVDEGRVTLQERLTMRPDLIAPEAGTL 191

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
            Y K  + +   +    +IT S N  +    + + G     A  ++ + ++ G++NT+  
Sbjct: 192 QYQKPNSQYAALEVAELMITISDNTATNMIIDRLGG-----AAELNQQFQEWGLENTVIN 246

Query: 178 NASGLHD--KNQITTARDQAILGILL 201
           N   L D      T+ RD A L + +
Sbjct: 247 NP--LPDMKGTNTTSPRDLATLMLKI 270


>gi|76799932|ref|ZP_00781933.1| DD-carboxypeptidase [Streptococcus agalactiae 18RS21]
 gi|76584716|gb|EAO61473.1| DD-carboxypeptidase [Streptococcus agalactiae 18RS21]
          Length = 96

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           KPK +SIVID NK  +      +  R PAS++KM TLY++FE L   K   +T 
Sbjct: 45  KPK-ASIVID-NKGHILWEDNADLERDPASMSKMXTLYLLFEDLXKGKTSPHTT 96


>gi|75763779|ref|ZP_00743442.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74488736|gb|EAO52289.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 115

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 31/68 (45%)

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
               +DG++T ++ N  ++ V++ + +D  +++V++          +  +L+    +  +
Sbjct: 5   NFKGVDGLQTSFSTNGNYSFVSTAKLEDTRLISVILDADEENISFIETKKLLQYGFDPSS 64

Query: 293 LKHQQTHR 300
               Q  +
Sbjct: 65  YSALQAFK 72


>gi|118619345|ref|YP_907677.1| lipoprotein LpqF [Mycobacterium ulcerans Agy99]
 gi|118571455|gb|ABL06206.1| conserved hypothetical lipoprotein LpqF [Mycobacterium ulcerans
           Agy99]
          Length = 437

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 65  QMTGFKQDEPRYPASLTKMMTLYII---FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK 121
           ++ G   ++P   AS+ K+   Y++    + ++S     + Q+ V+  +     S L L 
Sbjct: 166 RVAGTNTNQPLPLASIFKL---YVLHALADAIKSGTASWDDQLTVTAKSKAVGSSGLELS 222

Query: 122 EKTYFTTEQGILALITRSANDVSTAF 147
              + +  +    +I  S N  +   
Sbjct: 223 PGDHVSVRRAAEKMIANSDNMATDLL 248


>gi|196232518|ref|ZP_03131370.1| hypothetical protein CfE428DRAFT_4537 [Chthoniobacter flavus
           Ellin428]
 gi|196223280|gb|EDY17798.1| hypothetical protein CfE428DRAFT_4537 [Chthoniobacter flavus
           Ellin428]
          Length = 99

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 33  KILFLSIIMISMASELHAKPKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFE 91
            ++ L   ++++A    A+   +  V D     +   ++ D+     SLTK+ T  ++ +
Sbjct: 7   ALVALLFTLLAVAVPGRAEEAAAYAVTDSTTGFVLDQYRGDKKLPIGSLTKVATAMVVLD 66

Query: 92  YLQSKKLHLNTQIPV 106
           +  +   +L+    V
Sbjct: 67  WSAASNSNLDQVATV 81


>gi|183985060|ref|YP_001853351.1| lipoprotein LpqF [Mycobacterium marinum M]
 gi|183178386|gb|ACC43496.1| conserved hypothetical lipoprotein LpqF [Mycobacterium marinum M]
          Length = 456

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 65  QMTGFKQDEPRYPASLTKMMTLYII---FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK 121
           ++ G   ++P   AS+ K+   Y++    + ++S     + Q+ V+  +     S L L 
Sbjct: 185 RVAGTNTNQPLPLASIFKL---YVLHALADAIKSGTASWDDQLTVTAKSKAVGSSGLELS 241

Query: 122 EKTYFTTEQGILALITRSANDVSTAF 147
              + +  +    +I  S N  +   
Sbjct: 242 PGDHVSVRRAAEKMIANSDNMATDLL 267


>gi|83590885|ref|YP_430894.1| peptidoglycan-binding LysM [Moorella thermoacetica ATCC 39073]
 gi|83573799|gb|ABC20351.1| Peptidoglycan-binding LysM [Moorella thermoacetica ATCC 39073]
          Length = 333

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 47/146 (32%), Gaps = 16/146 (10%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119
           D+   Q  G   D P   AS  K+  +  I   +    L    ++  +     Q  S + 
Sbjct: 107 DLASGQSFGINADTPLPAASTVKLPAVLFINSLVDQGVLDWQQKLTYNSATDYQGGSGIL 166

Query: 120 ---LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              +K+   FT        IT S N        F+            N  + +G Q T++
Sbjct: 167 QFSVKDGDQFTLRTLTTLAITASDNIAYNMLRNFVGKGSIA------NYMQSLGGQ-TVF 219

Query: 177 KNASGLHDKNQITTARDQAILGILLR 202
                      ++TARD AI      
Sbjct: 220 ------PGGQNLSTARDMAIYVQAAL 239


>gi|256846550|ref|ZP_05552007.1| beta-lactamase [Fusobacterium sp. 3_1_36A2]
 gi|256718319|gb|EEU31875.1| beta-lactamase [Fusobacterium sp. 3_1_36A2]
          Length = 263

 Score = 53.7 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 59/154 (38%), Gaps = 18/154 (11%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYII--FEYLQSKKLHLNTQIPVSKTAATQN-PS 116
           D+NKN +     D+    AS  K++   +    + +   K  L+  I ++ +  T     
Sbjct: 28  DLNKNNVFSINGDKKVLSASTIKLL--ILAELMKKISENKFSLSDTIMIADSMKTGGDGV 85

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L    +FT ++    +I  S N  +    +F+          ++   K++ ++ T +
Sbjct: 86  LKELNTGHHFTLKELATLMIIVSDNQATNILIDFLG------MENINQLGKELDLKET-F 138

Query: 177 KNASGLHDK------NQITTARDQAILGILLRKN 204
                +  +      +  T A D ++L  L+ + 
Sbjct: 139 LGRKMMDAEARKKGYDNYTCADDISLLLKLIYQE 172


>gi|119509166|ref|ZP_01628317.1| Penicillin-binding protein, transpeptidase [Nodularia spumigena
           CCY9414]
 gi|119466332|gb|EAW47218.1| Penicillin-binding protein, transpeptidase [Nodularia spumigena
           CCY9414]
          Length = 501

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 54/150 (36%), Gaps = 12/150 (8%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIF-EYLQSKKLHLNTQIPVSKTAATQNPS 116
           ++D+                AS  K+  + I F + + + K+ L+  + + K        
Sbjct: 230 LVDLETGGYVDVNSSATFSAASTIKV-PILIAFFQDVDAGKVRLDEMLRMEKEMVAGGSG 288

Query: 117 KL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
            L Y +  T ++  +    +   S N  +      + G E      ++ +  + G+  T 
Sbjct: 289 NLQYQQVGTQYSALELATQMSASSDNTATNMLIARLGGMEA-----LNQRFLRWGLSATA 343

Query: 176 YKNASGLHD--KNQITTARDQAILGILLRK 203
            +N   L D      ++ RD   L  ++ +
Sbjct: 344 IRNP--LPDLPGTNTSSPRDLGNLLAMVNQ 371


>gi|238019629|ref|ZP_04600055.1| hypothetical protein VEIDISOL_01503 [Veillonella dispar ATCC 17748]
 gi|237863670|gb|EEP64960.1| hypothetical protein VEIDISOL_01503 [Veillonella dispar ATCC 17748]
          Length = 272

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 76/190 (40%), Gaps = 26/190 (13%)

Query: 47  ELHAKPKYSSIVI---DVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNT 102
           EL  K   S +V+   D  +  +   K ++  +  ASL K++ +  +F   ++++L LN 
Sbjct: 20  ELAPKGNISYVVLQFDDEEEPIIIASKGEDTVHSSASLIKVLIMEYVFHLARTEQLDLND 79

Query: 103 QIPVSKTAATQNPSKLY-LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
            +P+S+T   +    L  L  K  FT  +    ++  S N  +      +          
Sbjct: 80  TVPLSRTPRVEGGGALQELVAKHSFTYLELCRLMMVLSDNIATNLLITVLG------MEN 133

Query: 162 MSNKAKKIGMQ----NTIYKNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
           ++ +A+++G+     N +  +   L + ++   TA   A L          Y   F  R 
Sbjct: 134 INARAEQLGVDEIELNRMMMDFEALAEGRDNRMTAMALARL----------YKHIFECRD 183

Query: 217 FRYRNRIITN 226
             +  R + N
Sbjct: 184 RDFYGREMWN 193


>gi|303233197|ref|ZP_07319870.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4]
 gi|302480782|gb|EFL43869.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4]
          Length = 434

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 69/177 (38%), Gaps = 23/177 (12%)

Query: 37  LSIIMISMASELHA--KPKYSSI---VIDVNKNQMTGFKQDEPRYPASLTKM--MTLYII 89
            S  +I++ SEL     P  +++   V+ +          ++    AS+ K+  M  Y+ 
Sbjct: 178 ASAQLIALKSELEQVVAPYGNAVSVSVVAIRTGATCDINANKQVISASMIKLAVMAAYL- 236

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            + + +  ++    +P+++        K+  +    +T +     +I  S N  + A  +
Sbjct: 237 -QAVDAGTINPQQALPLARIKIVGGTGKIQSERARTYTYDALCRYMIMYSDNTATNALID 295

Query: 150 FISGSEKKFAILMSNKAKKIGMQNTIYKNA-----SGLHDKNQITTARDQAILGILL 201
            +          ++++A+++G  +T          +G+      T+A D + L    
Sbjct: 296 DLG------VDAVNSRARELGCTHTTLNRKLMQLNTGV---ENYTSAADVSRLLCAF 343


>gi|88808982|ref|ZP_01124491.1| putative beta-lactamase [Synechococcus sp. WH 7805]
 gi|88786924|gb|EAR18082.1| putative beta-lactamase [Synechococcus sp. WH 7805]
          Length = 366

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 53/146 (36%), Gaps = 14/146 (9%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPRYPASLTKMMT--LYIIFEYLQSKKLHLNTQIPVSKTAA 111
            S+ ++ ++  +      D     AS  K  T  L +  E +   KL  N  + ++K   
Sbjct: 97  VSAFMLVLDDGRYAQLAPDTALPAASSIK--TPILLVTLEEIDDDKLSWNEPLTLTKEVV 154

Query: 112 TQNPSKLYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                 +  K   + F T +    +I  S N  +    + + G +      ++ +   +G
Sbjct: 155 GGGAGWMASKPLGSRFPTHEVATEMIRVSDNTATNLLIDRLGGKDA-----LNARFIALG 209

Query: 171 MQNTIYKNASGLHD--KNQITTARDQ 194
           M  T     + L D      T+ARD 
Sbjct: 210 MSAT--VVNNWLPDLEGTNTTSARDL 233


>gi|332359486|gb|EGJ37305.1| beta-lactamase [Streptococcus sanguinis SK1056]
          Length = 427

 Score = 53.3 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 9/127 (7%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----V 106
           K  YS  V  ++  +  G  QD+  Y AS+TK+  LY + E L  KKL L+ +      V
Sbjct: 202 KVDYSIYVKQLDTGKEAGINQDQEMYSASVTKLPYLYYVQEQLDQKKLSLDQKFKYIGAV 261

Query: 107 SKTAATQNPSKLYLKEKT----YFTTEQGILALITRSANDVSTAFGEF-ISGSEKKFAIL 161
           +  A    P       K+     ++ +  I  +   S N      G +  + S+K F   
Sbjct: 262 NDFAGAYEPEGSGSIAKSADDKEYSVQDLINRVAKESDNVAHNILGYYATNQSDKNFQQT 321

Query: 162 MSNKAKK 168
           ++  A K
Sbjct: 322 INKIAGK 328


>gi|329768498|ref|ZP_08259987.1| hypothetical protein HMPREF0428_01684 [Gemella haemolysans M341]
 gi|328836726|gb|EGF86381.1| hypothetical protein HMPREF0428_01684 [Gemella haemolysans M341]
          Length = 392

 Score = 53.3 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 99/255 (38%), Gaps = 23/255 (9%)

Query: 57  IVIDVNKNQMTGFKQDEPRYPASLTKM---MTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           +V ++N  ++   + +  +   S+ K+   + LY++ + L++ K+ L+++I +     T 
Sbjct: 36  VVSELNTGKIISKRGENEKV--SVGKLPNYLALYLLADNLKNNKITLDSKIDI----KTS 89

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           +      K ++  T +  I  L   ++N ++ A     +           +    + + +
Sbjct: 90  DDILTKYKFESSITVKDAIFLLENEASNGLNQAIFSHFNID----ITKAKDTLAAMSLND 145

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR-YRNRIITNHNKLLN 232
           T  +     +    I+TA++ + L  L+ K +P+  +     +        I N  +   
Sbjct: 146 TKLETFD-NNSSTNISTAKNISYLTSLILKTYPEITEITKNPEHTLATGEKIKNSVEF-K 203

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ----ERDQKALELITSFL 288
           +      +   Y+     N VT     +  ++  V+     +    E+ QK+ + + +  
Sbjct: 204 ESEKFRVLGLDYSEK---NSVTYAYSGNTKLIITVLNQSDDKAAYFEKLQKSYDYLFTNY 260

Query: 289 EKKTLKHQQTHRKDN 303
             K      T+  +N
Sbjct: 261 HYKLALKAGTYTINN 275


>gi|315446233|ref|YP_004079112.1| beta-lactamase class A [Mycobacterium sp. Spyr1]
 gi|315264536|gb|ADU01278.1| beta-lactamase class A [Mycobacterium sp. Spyr1]
          Length = 434

 Score = 53.3 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 4/100 (4%)

Query: 52  PKYSSIVIDVNKN---QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
            +YS  V  V+     ++ G   D     AS+ K+  L  + + +++  L     + +++
Sbjct: 146 ARYSYQVAKVDDGRCVKVAGSNTDLSLPLASIFKLYVLLAVADAVKAGTLAWTDPLTITE 205

Query: 109 TAATQNPSKLY-LKEKTYFTTEQGILALITRSANDVSTAF 147
            A     S    L+     T  +    +I+ S N  +   
Sbjct: 206 EAKAVGSSGFDELEPGATVTVREASQQMISASDNMATDLL 245


>gi|145222026|ref|YP_001132704.1| beta-lactamase [Mycobacterium gilvum PYR-GCK]
 gi|145214512|gb|ABP43916.1| beta-lactamase [Mycobacterium gilvum PYR-GCK]
          Length = 452

 Score = 53.3 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 4/100 (4%)

Query: 52  PKYSSIVIDVNKN---QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
            +YS  V  V+     ++ G   D     AS+ K+  L  + + +++  L  +  + +++
Sbjct: 165 ARYSYQVAKVDDGRCVKVAGSNTDLSLPLASIFKLYVLLAVADAVKAGTLQWSDPLTITE 224

Query: 109 TAATQNPSKLY-LKEKTYFTTEQGILALITRSANDVSTAF 147
            A     S    L+     T  +    +I+ S N  +   
Sbjct: 225 EAKAVGSSGFDELEPGATVTVREASQQMISASDNMATDLL 264


>gi|118473563|ref|YP_886995.1| beta-lactamase [Mycobacterium smegmatis str. MC2 155]
 gi|33188340|gb|AAP97895.1| beta-lactamase [Mycobacterium smegmatis str. MC2 155]
 gi|118174850|gb|ABK75746.1| beta-lactamase [Mycobacterium smegmatis str. MC2 155]
          Length = 293

 Score = 53.3 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 61/186 (32%), Gaps = 21/186 (11%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-------------PKYSSIVIDVNKNQMTGFK 70
           + R   L+G +  ++   + M +   A                     +D++ N+    +
Sbjct: 4   LSRRSVLIGSLAVMAAAGVRMPTASAAPVDDRIADLERRNNASIGIYAVDLDSNRTVAHR 63

Query: 71  QDEPRYPASLTKMMTLYII---FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
            D+     S  K    Y+        +  +L L+ ++ V   A   N            T
Sbjct: 64  ADDSFAMCSTFK---AYLAARILRGAERGELSLDDRVFVDPAALLSNSPITETHAGGEMT 120

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTIYKNASGLHDK 185
             +   A + RS N  +    + I G  +   FA  + ++  ++    T   +A     +
Sbjct: 121 LAELCQAALQRSDNAAANLLLKQIGGPAEITAFARSIGDQRTRLDRWETELNSAVPGDPR 180

Query: 186 NQITTA 191
           +  T A
Sbjct: 181 DTSTPA 186


>gi|325689364|gb|EGD31370.1| beta-lactamase [Streptococcus sanguinis SK115]
          Length = 427

 Score = 53.3 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 9/127 (7%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----V 106
           K  YS  V  ++  +  G  Q++  Y AS+TK+  LY + E L  KKL L+ +      V
Sbjct: 202 KADYSIYVKQLDTGKEAGINQNQEMYSASVTKLPYLYYVQEQLDQKKLSLDQKFKYIGAV 261

Query: 107 SKTAATQNPSKLYLKEKT----YFTTEQGILALITRSANDVSTAFGEF-ISGSEKKFAIL 161
           +  A    P       K+     ++ +  I  +   S N      G +  + S+K F   
Sbjct: 262 NDFAGAYEPEGSGSIAKSADDKEYSVQDLINRVAKESDNVAHNILGYYATNQSDKNFQQT 321

Query: 162 MSNKAKK 168
           ++  A K
Sbjct: 322 INKIAGK 328


>gi|317496478|ref|ZP_07954828.1| hypothetical protein HMPREF0432_01432 [Gemella moribillum M424]
 gi|316913409|gb|EFV34905.1| hypothetical protein HMPREF0432_01432 [Gemella moribillum M424]
          Length = 350

 Score = 53.3 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 116/294 (39%), Gaps = 31/294 (10%)

Query: 26  RNIQLMGKILFLSIIMISMASEL----HAKPKYSSI-----VIDVNKNQMTGFKQDEPRY 76
           + I ++  +L   +  ++ A  L    +A   +S +     V + N  ++   + +  + 
Sbjct: 4   KKISILSILLVFLLPNLAKAEMLFLDNNAISNFSDVNTHLVVSEFNTGKIISKRGENKQV 63

Query: 77  PASLTKM---MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
             S++ +   + L+++   L++ K+ L+T++ ++ + A  N   L     +  + +  + 
Sbjct: 64  --SVSNLPNHLALFLLTNDLKNDKISLDTKLKITNSDAILNKYNL----SSSVSVQDALF 117

Query: 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
            L     N+ S A  E I            +    + + +T   + +   D+  ++TA++
Sbjct: 118 LL----ENEESNALLEAIFKKYDLTIKKAKDILSSMSLNDTTLASLT--IDEKNMSTAKN 171

Query: 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIV 253
            + L  ++ +N+P+  +     +    +     +N    +      +   +   +  N +
Sbjct: 172 MSYLTNMILRNYPKLTEITKNPEVTLSSGSKATNNISFTESDKFRVLGLNH---ANKNSI 228

Query: 254 TSLRYKDDPIVAVVMGMPTSQ----ERDQKALELITSFLEKKTLKHQQTHRKDN 303
           T     D  ++  ++    ++    ++ QK  + + S    K      +++ +N
Sbjct: 229 TFAYSGDTKLLITILNQNDNKATYFDKLQKTYDYLFSNYSYKLALKAGSYKINN 282


>gi|186684664|ref|YP_001867860.1| beta-lactamase [Nostoc punctiforme PCC 73102]
 gi|186467116|gb|ACC82917.1| beta-lactamase [Nostoc punctiforme PCC 73102]
          Length = 470

 Score = 52.9 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 60/148 (40%), Gaps = 8/148 (5%)

Query: 59  IDVNKNQMTGFKQDEPRYPASLTKMMTLYIIF-EYLQSKKLHLNTQIPVSKTAATQNPSK 117
           +D++         D     AS  K+  + I F + L + K+ L   + + +   T     
Sbjct: 223 LDLDTGDYLDVGGDRVFPAASTIKL-PILIAFFQDLDAGKVTLQENLIMRRDLVTNGSGT 281

Query: 118 L-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
           + Y +    +T  + I  +IT S N  +    + + G        ++ + +  G+++T+ 
Sbjct: 282 MQYERVGKKYTALETITKMITISDNTATNMIIDRLGG-----VTKLNQRFRNWGLKDTVI 336

Query: 177 KNASGLHDKNQITTARDQAILGILLRKN 204
           ++          T+++D A +  L+  N
Sbjct: 337 RHLLADLRGTNTTSSQDMARVLALVVNN 364


>gi|323704892|ref|ZP_08116469.1| beta-lactamase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535818|gb|EGB25592.1| beta-lactamase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 259

 Score = 52.9 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 18/146 (12%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY- 119
           +   +M G  ++     AS  K++ +  I++  +   + L   I +S    T     LY 
Sbjct: 25  LKTGEMIGVNEEMMFPSASTIKILIMAQIYKMAKEGYIRLTDNIVLSDFMKTAGSGVLYQ 84

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY--- 176
           L  K  FT E+ I  +I  S N  +    +            ++  A+ +G+ +T     
Sbjct: 85  LNSKHKFTIEELITLMIIISDNTAANVLIDIAD------MKNINKMAEDLGLFHTKIQRK 138

Query: 177 -----KNASGLHDKNQITTARDQAIL 197
                   SG   K+  T  +D   L
Sbjct: 139 MMDFEAIKSG---KDNYTCPKDMTRL 161


>gi|282897431|ref|ZP_06305433.1| Penicillin-binding protein, transpeptidase [Raphidiopsis brookii
           D9]
 gi|281198083|gb|EFA72977.1| Penicillin-binding protein, transpeptidase [Raphidiopsis brookii
           D9]
          Length = 523

 Score = 52.9 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 55/142 (38%), Gaps = 8/142 (5%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIF-EYLQSKKLHLNTQIPVSKTAATQNPS 116
           ++D++         +     AS  K+  + + F E +   K+ L+  + + +        
Sbjct: 220 IVDIDSGAYVDVSGNNNFPAASTIKI-PVLVAFLEDVDRGKIRLDEILTMEQEMVAGGSG 278

Query: 117 KLY-LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
            L  +   T   + +    ++T S N  +      + G E     L++++ +  G+ NT 
Sbjct: 279 NLRTMPVGTKLKSIEVATKMMTISDNTATNMLISKLGGKE-----LLNSRFRSWGLVNTA 333

Query: 176 YKNASGLHDKNQITTARDQAIL 197
            ++     +    T+ ++ A L
Sbjct: 334 IQSPLPDLEGTNTTSPKELASL 355


>gi|254421584|ref|ZP_05035302.1| beta-lactamase, putative [Synechococcus sp. PCC 7335]
 gi|196189073|gb|EDX84037.1| beta-lactamase, putative [Synechococcus sp. PCC 7335]
          Length = 511

 Score = 52.9 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 70/175 (40%), Gaps = 14/175 (8%)

Query: 37  LSIIMISMASELHAKP-KYSSIV-----IDVNKNQMTGFKQDEPRYPASLTKMMTLYIIF 90
           L+  +  + + L A P +Y+ +V      DV+  +      +E    AS  K+  + + F
Sbjct: 222 LTTEIAPLKAALQALPDQYTGLVPKVFYADVDTGEYVSVGGEEAIAAASTIKL-PILLAF 280

Query: 91  -EYLQSKKLHLNTQIPVSKTAATQNPSKLYL-KEKTYFTTEQGILALITRSANDVSTAFG 148
            E + + ++ L   + +           + +   KT +T  +    +I  S N  +    
Sbjct: 281 FEDVDAGRIDLMKTMSMKPEQIASGSGDMQVADPKTQYTALEVASQMIVTSDNTATNMMI 340

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
           + + G E      ++N+    G++ T         +   +T+ARD A   +L+ +
Sbjct: 341 DLLGGPEA-----LNNRFINYGLETTQLNAPLPDLEGTNLTSARDLAHTMLLISQ 390


>gi|94991763|ref|YP_599862.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS2096]
 gi|94545271|gb|ABF35318.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
           MGAS2096]
          Length = 166

 Score = 52.9 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 41/86 (47%), Gaps = 7/86 (8%)

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE--LITSFLEK 290
            M  +DG+KTG + ++ FN + + +     ++ +VMG+    +++ +      + +  EK
Sbjct: 26  GMKGVDGLKTGSSPSAAFNAMITAKRGKTRLITIVMGVGDWSDQNGEFYRHPFVNALTEK 85

Query: 291 -----KTLKHQQTHRKDNLSSTSLKK 311
                KTL  +   + + L   + K+
Sbjct: 86  GFKDSKTLSKKARQKLEKLVPQTKKE 111


>gi|148239934|ref|YP_001225321.1| Beta-lactamase family protein [Synechococcus sp. WH 7803]
 gi|147848473|emb|CAK24024.1| Beta-lactamase family protein [Synechococcus sp. WH 7803]
          Length = 381

 Score = 52.9 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 64/180 (35%), Gaps = 17/180 (9%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPRYPASLTKMMT--LYIIFEYLQSKKLHLNTQIPVSKTAA 111
            S+ ++ ++  +      D     AS  K  T  L +  E L + KL  N  + +SK   
Sbjct: 113 VSAFMLVLDDGRYAQLAPDTALPAASSIK--TPILLVTLEELDAGKLSWNEPLQLSKAVV 170

Query: 112 TQNPSKLYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                 +  K   T F T +    +I  S N  +    E + G E      ++ +   +G
Sbjct: 171 GGGAGWMASKPLGTRFPTHEVATEMIRVSDNTATNLLIERLGGKEA-----LNARFNALG 225

Query: 171 MQNTIYKNASGLHD--KNQITTARDQAILGILLRKNFPQYYKYFSIRKFR-YRNRIITNH 227
           +  T     + L D      T+ARD A    +   +  +     S   FR      +TN 
Sbjct: 226 LSAT--AVNNWLPDLKGTNTTSARDLAR--SIALVDTGEALSIRSRDLFREVMGTSVTNT 281


>gi|115376746|ref|ZP_01463972.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|310824845|ref|YP_003957203.1| beta-lactamase [Stigmatella aurantiaca DW4/3-1]
 gi|115366233|gb|EAU65242.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397917|gb|ADO75376.1| Beta-lactamase [Stigmatella aurantiaca DW4/3-1]
          Length = 356

 Score = 52.9 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 24/146 (16%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           + R I+  G  L L++++ S    L      S                       V+DV 
Sbjct: 1   MTRTIR--GFALLLAVLVTSSTEALGTPAVPSWTMGLNRLVEEAVRGFDGELSLYVLDVT 58

Query: 63  KNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-LK 121
             +   +  + P Y +S  K+  +  +   +  ++L     +  +  A      +L+  +
Sbjct: 59  SGEEYAYDAERPTYLSSAIKLGVMLEVMHQVDQRQLSWEETLTFTPEAIRDGMHRLHRAQ 118

Query: 122 EKTYFTTEQGILALITRSANDVSTAF 147
                +    + A++  S N  +   
Sbjct: 119 PGDTLSVSTLLEAMMVDSDNAAADLL 144


>gi|229156074|ref|ZP_04284173.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus ATCC 4342]
 gi|228627395|gb|EEK84123.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
           [Bacillus cereus ATCC 4342]
          Length = 56

 Score = 52.9 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP--SKLYLKEKTYFTTEQG 131
           +TKMM+ Y++ E ++  +L  + ++ +S  A   +QN   S + L+    +T ++ 
Sbjct: 1   MTKMMSEYLVHEAVEKGQLKWDQRVKISVYAHKISQNCSLSNVLLENCGSYTVKEL 56


>gi|328480202|gb|EGF49133.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus MTCC
           5462]
          Length = 180

 Score = 52.6 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 240 IKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQE--RDQKALELITSFLEK 290
           +KTG +  +G     ++      I+ VV+      +  R  +  +L+T  LE 
Sbjct: 1   LKTGTSDAAGDCFTGTVEKNGMRIITVVLHANGDAKTRRFDETKKLMTHVLEN 53


>gi|302385062|ref|YP_003820884.1| beta-lactamase [Clostridium saccharolyticum WM1]
 gi|302195690|gb|ADL03261.1| beta-lactamase [Clostridium saccharolyticum WM1]
          Length = 265

 Score = 52.6 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 7/115 (6%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-PSKLY 119
           +   +   + + EP   AS+ K+  +   FE  +     +N    V K     +  +  Y
Sbjct: 23  LKTGEGFFYHEQEPMLAASVIKLFVMAAAFEKEKKGTFRMNDIFAVKKEDWVPSCGALTY 82

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           L +    T    +  +I  S N  +    + +          ++   K++G + T
Sbjct: 83  LHDGILVTGMDLVTLMIIFSDNTATNVLIDILG------MKEINETIKELGFRQT 131


>gi|290968126|ref|ZP_06559671.1| hypothetical protein HMPREF0889_1367 [Megasphaera genomosp. type_1
           str. 28L]
 gi|290781801|gb|EFD94384.1| hypothetical protein HMPREF0889_1367 [Megasphaera genomosp. type_1
           str. 28L]
          Length = 324

 Score = 52.6 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 20/140 (14%)

Query: 66  MTGFKQDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLYLKE 122
           +     D     AS+ K  +++     E ++  K+  +  I + +        S     +
Sbjct: 103 VIY--NDHTMRSASMIKVFILSA--AMEQIKQGKMSFDQTITLQEADKVGGAGSLCGYPD 158

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK----- 177
            +       +  +IT+S N  +    + +          +++  ++ G   T  +     
Sbjct: 159 GSVVDVRTLLKLMITQSDNTATNLMIDLVG------MDAINHYMQQHGYTETRLEWKMMA 212

Query: 178 -NASGLHDKNQITTARDQAI 196
             A G   KN  T+ RD   
Sbjct: 213 QTAPGETRKN-RTSVRDLGT 231


>gi|86605517|ref|YP_474280.1| carboxylesterase [Synechococcus sp. JA-3-3Ab]
 gi|86554059|gb|ABC99017.1| carboxylesterase, beta-lactamase family [Synechococcus sp.
           JA-3-3Ab]
          Length = 386

 Score = 52.6 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 60/147 (40%), Gaps = 12/147 (8%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIF-EYLQSKKLHLNTQIPVSKTAATQ 113
            ++  +V      G + D+    AS+ K+  + + F + +++ ++ L+ ++ + +     
Sbjct: 136 GALFWEVESGAFAGVRPDQVFPAASVIKI-PILLAFLQAVETGQVRLDERLTLREDLRGG 194

Query: 114 NPSKLYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
               L  +   +  +  +    + T S N  +    + + G E      ++ K ++ G+Q
Sbjct: 195 GAGVLQTRPLGSRVSALEAATLMSTISDNFAANLIIDRLGGREA-----LNQKFRQWGLQ 249

Query: 173 NTIYKNASGLHD--KNQITTARDQAIL 197
           +T    +  L D      ++ RD   L
Sbjct: 250 HTQI--SWWLPDLEGTNTSSPRDMVWL 274


>gi|303231009|ref|ZP_07317752.1| conserved hypothetical protein [Veillonella atypica ACS-049-V-Sch6]
 gi|302514391|gb|EFL56390.1| conserved hypothetical protein [Veillonella atypica ACS-049-V-Sch6]
          Length = 271

 Score = 52.6 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 70/177 (39%), Gaps = 24/177 (13%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQ----MTGFKQDEPRYPASLTKMMTLYI--IFEYLQ 94
           + ++   L +    S +V  +N+ +    +   K+      AS+ K  TL +  +F    
Sbjct: 14  LAALLDTLPSDATVSYMVTRLNEGEEATIVASSKETIVHTGASMVK--TLILEYVFHLAA 71

Query: 95  SKKLHLNTQIPVSKTAATQN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            ++L LN  I +S++   +   + + L     F+  +    ++  S N  +    + +  
Sbjct: 72  QEQLDLNDTIALSRSPRVEGAGALMELVGNHSFSYLELCRLMMVLSDNWATNLLIQALG- 130

Query: 154 SEKKFAILMSNKAKKIGMQN-------TIYKNASGLHDKNQITTARDQAILGILLRK 203
                   ++ +A+++G+++         +       ++    TA D A+L   + +
Sbjct: 131 -----MENINARAEQLGLEHFEINRMMMDFTAVKE--NRENYITAMDMAVLLHHIYE 180


>gi|323691502|ref|ZP_08105773.1| beta-lactamase [Clostridium symbiosum WAL-14673]
 gi|323504475|gb|EGB20266.1| beta-lactamase [Clostridium symbiosum WAL-14673]
          Length = 262

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 17/144 (11%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQ----SKKLHLNTQIPVSKTAATQN-PSKLYLKEKTYF 126
           D     AS+ K+    +I   L     + +L L  +I +++   T        L+    F
Sbjct: 40  DRRVPSASMIKL----VIMAELMRRVCAGELSLEEKIKITQEMRTGGDGVLKELEPGHEF 95

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
           +  + +  +I  S N+ +    + +          ++  A ++G++  +      + D  
Sbjct: 96  SLREILTLMIIVSDNEATNILIQMLG------MDRINRMAAELGLKEAVLGRK--MMDSE 147

Query: 187 QITTARDQAILGILLRKNFPQYYK 210
                RD  I    +     + Y+
Sbjct: 148 AKKQGRDNFICADDIMLILKKIYE 171


>gi|323483052|ref|ZP_08088445.1| beta-lactamase [Clostridium symbiosum WAL-14163]
 gi|323403592|gb|EGA95897.1| beta-lactamase [Clostridium symbiosum WAL-14163]
          Length = 288

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 52/140 (37%), Gaps = 9/140 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-PSKLYLKEKTYFTTEQ 130
           D     AS+ K++ +  +   + + +L L  +I +++   T        L+    F+  +
Sbjct: 40  DRRVPSASMIKLVIMAELMRRVGAGELSLEEKIKITQEMRTGGDGVLKELEPGHEFSLRE 99

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            +  +I  S N+ +    + +          ++  A ++G++  +      + D      
Sbjct: 100 ILTLMIIVSDNEATNILIQMLG------MDRINRMAAELGLKEAVLGRK--MMDSEAKKQ 151

Query: 191 ARDQAILGILLRKNFPQYYK 210
            RD  I    +     + Y+
Sbjct: 152 GRDNFICADDIMLILKKIYE 171


>gi|90418307|ref|ZP_01226219.1| putative D-alanyl-D-alanine carboxypeptidase [Aurantimonas
          manganoxydans SI85-9A1]
 gi|90337979|gb|EAS51630.1| putative D-alanyl-D-alanine carboxypeptidase [Aurantimonas
          manganoxydans SI85-9A1]
          Length = 409

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 14/86 (16%)

Query: 22 IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSI--------------VIDVNKNQMT 67
          +  +R+ +  G  ++  ++    A  L   P ++ +              V+D + N++ 
Sbjct: 1  MGTRRHAEHAGAAMWFRLLATVFAVLLLQAPAFADVKDRIASLAPSGLVFVLDEDGNELL 60

Query: 68 GFKQDEPRYPASLTKMMTLYIIFEYL 93
              D+P  PAS+ K++T ++  E L
Sbjct: 61 AQNADQPFVPASVAKLVTAWLAMEEL 86


>gi|320547723|ref|ZP_08042008.1| beta-lactamase [Streptococcus equinus ATCC 9812]
 gi|320447798|gb|EFW88556.1| beta-lactamase [Streptococcus equinus ATCC 9812]
          Length = 428

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 8/110 (7%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           K  YS  V  ++  +  G   D   Y AS+ K+ TLY + E +Q   + ++ ++  +   
Sbjct: 203 KGNYSIYVKQLSTQETAGINSDTTMYAASIAKLATLYYVEEKIQDGSVKMDDKLRYTADV 262

Query: 111 ----ATQNPSKLY----LKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
                  NPS         +   ++ E  + A+   S N  +   G +I+
Sbjct: 263 NNFSKAYNPSGSGKISKTADNKDYSVEDLLKAVCQHSDNVATNILGYYIA 312


>gi|90421252|ref|ZP_01229148.1| conserved hypothetical protein [Aurantimonas manganoxydans
          SI85-9A1]
 gi|90334493|gb|EAS48283.1| conserved hypothetical protein [Aurantimonas manganoxydans
          SI85-9A1]
          Length = 227

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 14/86 (16%)

Query: 22 IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSI--------------VIDVNKNQMT 67
          +  +R+ +  G  ++  ++    A  L   P ++ +              V+D + N++ 
Sbjct: 1  MGTRRHAEHAGAAMWFRLLATVFAVLLLQAPAFADVKDRIASLAPSGLVFVLDEDGNELL 60

Query: 68 GFKQDEPRYPASLTKMMTLYIIFEYL 93
              D+P  PAS+ K++T ++  E L
Sbjct: 61 AQNADQPFVPASVAKLVTAWLAMEEL 86


>gi|312865770|ref|ZP_07725992.1| conserved hypothetical protein [Streptococcus downei F0415]
 gi|311098645|gb|EFQ56867.1| conserved hypothetical protein [Streptococcus downei F0415]
          Length = 432

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 65/183 (35%), Gaps = 22/183 (12%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----- 107
           KYS  V  ++  ++     D+P Y AS++K+  LY + + L   K+  +  +  S     
Sbjct: 209 KYSIYVKQLDSGKVAQINADKPMYSASVSKLPLLYYVQDQLNKGKIKASQSLTYSSAVNS 268

Query: 108 -KTAATQNPSKLYLK--EKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMS 163
            K A     S    K  +   +T       +   S N  +   G +++   +K F   + 
Sbjct: 269 FKDAYKTEGSGTLSKTADNKPYTISDLERHVTQYSDNVATNILGYYVAHQYDKDFQKTIK 328

Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI 223
           +    IG +            K +  +A+    +   + K       Y +   +    RI
Sbjct: 329 S---AIGEK---------WDMKERKVSAKTAGKMMEAIYKQNGDITNYLASTDYD-NQRI 375

Query: 224 ITN 226
             N
Sbjct: 376 SKN 378


>gi|327467728|gb|EGF13222.1| beta-lactamase [Streptococcus sanguinis SK330]
          Length = 427

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 9/127 (7%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP-VSKT 109
           K  YS  V  ++  +  G  QD+  Y AS+TK+  LY + E L  KKL L+ +   +   
Sbjct: 202 KADYSIYVKQLDTGKEAGINQDQEMYSASVTKLPYLYYVQEQLDQKKLSLDQKFKYIGAV 261

Query: 110 -----AATQNPSKLYLKEKT--YFTTEQGILALITRSANDVSTAFGEF-ISGSEKKFAIL 161
                A     S    K      ++ +  I  +   S N      G +  + S+K F   
Sbjct: 262 NDFTGAYEPEGSGSIAKSADDKEYSVQDLINRVAKESDNVSHNILGYYATNQSDKNFQQT 321

Query: 162 MSNKAKK 168
           ++  A K
Sbjct: 322 INKIAGK 328


>gi|18310166|ref|NP_562100.1| beta-lactamase [Clostridium perfringens str. 13]
 gi|110798952|ref|YP_695833.1| putative beta-lactamase [Clostridium perfringens ATCC 13124]
 gi|110801832|ref|YP_698524.1| beta-lactamase [Clostridium perfringens SM101]
 gi|168205423|ref|ZP_02631428.1| putative beta-lactamase [Clostridium perfringens E str. JGS1987]
 gi|168209699|ref|ZP_02635324.1| putative beta-lactamase [Clostridium perfringens B str. ATCC 3626]
 gi|182626635|ref|ZP_02954379.1| putative beta-lactamase [Clostridium perfringens D str. JGS1721]
 gi|18144845|dbj|BAB80890.1| probable beta-lactamase [Clostridium perfringens str. 13]
 gi|110673599|gb|ABG82586.1| putative beta-lactamase [Clostridium perfringens ATCC 13124]
 gi|110682333|gb|ABG85703.1| putative beta-lactamase [Clostridium perfringens SM101]
 gi|170662997|gb|EDT15680.1| putative beta-lactamase [Clostridium perfringens E str. JGS1987]
 gi|170712213|gb|EDT24395.1| putative beta-lactamase [Clostridium perfringens B str. ATCC 3626]
 gi|177908029|gb|EDT70608.1| putative beta-lactamase [Clostridium perfringens D str. JGS1721]
          Length = 259

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 54/143 (37%), Gaps = 13/143 (9%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119
           D+      G+ ++     A   K+     + + ++  K+    ++ + +++     + + 
Sbjct: 21  DLKSGYTYGYNENVKMISAGCMKLPIAIALIKEVEEGKIDFLDKVKI-ESSDKVYGTGII 79

Query: 120 LKEKTY-FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            +     +T  + ++A++ +S N  +    + +          ++   K+ GM+NT    
Sbjct: 80  HEFGERDYTVFELMVAMLIQSDNTAANKIIDLVG------MDKINETIKEFGMKNTELNR 133

Query: 179 ASG-----LHDKNQITTARDQAI 196
            +        D    TTA D  +
Sbjct: 134 KTADERNFKSDVENYTTAYDLTL 156


>gi|168213142|ref|ZP_02638767.1| putative beta-lactamase [Clostridium perfringens CPE str. F4969]
 gi|170715385|gb|EDT27567.1| putative beta-lactamase [Clostridium perfringens CPE str. F4969]
          Length = 259

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 54/143 (37%), Gaps = 13/143 (9%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119
           D+      G+ ++     A   K+     + + ++  K+    ++ + +++     + + 
Sbjct: 21  DLKSGYTYGYNENVKMISAGCMKLPIAIALIKEVEEGKIDFLDKVKI-ESSDKVYGTGII 79

Query: 120 LKEKTY-FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            +     +T  + ++A++ +S N  +    + +          ++   K+ GM+NT    
Sbjct: 80  HEFGERDYTVFELMVAMLIQSDNTAANKIIDLVG------MDKINETIKEFGMKNTELNR 133

Query: 179 ASG-----LHDKNQITTARDQAI 196
            +        D    TTA D  +
Sbjct: 134 KTADERNFKSDVENYTTAYDLTL 156


>gi|168217860|ref|ZP_02643485.1| putative beta-lactamase [Clostridium perfringens NCTC 8239]
 gi|182380094|gb|EDT77573.1| putative beta-lactamase [Clostridium perfringens NCTC 8239]
          Length = 259

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 54/143 (37%), Gaps = 13/143 (9%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119
           D+      G+ ++     A   K+     + + ++  K+    ++ + +++     + + 
Sbjct: 21  DLKSGYTYGYNENVKMISAGCMKLPIAIALIKEVEEGKIDFLDKVKI-ESSDKVYGTGII 79

Query: 120 LKEKTY-FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            +     +T  + ++A++ +S N  +    + +          ++   K+ GM+NT    
Sbjct: 80  HEFGERDYTVFELMVAMLIQSDNTAANKIIDLVG------MDKINETIKEFGMKNTELNR 133

Query: 179 ASG-----LHDKNQITTARDQAI 196
            +        D    TTA D  +
Sbjct: 134 KTADERNFKSDIENYTTAYDLTL 156


>gi|304317847|ref|YP_003852992.1| beta-lactamase [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302779349|gb|ADL69908.1| beta-lactamase [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 259

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 52/143 (36%), Gaps = 12/143 (8%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY- 119
           +   +     ++     AS  K++ +  I++  +   + L   I +S    T     LY 
Sbjct: 25  LKTGERIDINEEMMFPSASTIKIVIMAQIYKMAKEGYIRLTDNIILSDFMKTNGSGILYQ 84

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           L  K  FT E+ I  +I  S N  +    +            ++  A+ +GM +T  +  
Sbjct: 85  LNSKHKFTIEELITLMIIISDNTAANVLIDIAD------MKNINKMAEDLGMLHTKIQRK 138

Query: 180 -----SGLHDKNQITTARDQAIL 197
                +    K+  T  +D   L
Sbjct: 139 MMDFEAAKSGKDNYTCPKDMTHL 161


>gi|266619191|ref|ZP_06112126.1| beta-lactamase [Clostridium hathewayi DSM 13479]
 gi|288869282|gb|EFD01581.1| beta-lactamase [Clostridium hathewayi DSM 13479]
          Length = 272

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 53/139 (38%), Gaps = 12/139 (8%)

Query: 40  IMISMASELHAKPKYSSIVID-VNKNQMTGFKQDEPRYPASLTKM--MTLYIIFEYLQSK 96
           I +++A ++ A P  +    + +   +   + ++E    AS+ K+  MT    F   +  
Sbjct: 15  IELNVADQIKALPGKTGFYYENLVTGERAAYHEEERMMAASVIKLFVMTE--AFTRFEEG 72

Query: 97  KLHLNTQIPVS-KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
            L  +  I +  +       +  YL +    T    +  +I  S N  +    + +    
Sbjct: 73  TLSPDRIIRMRREDCVPSCGALTYLHDGIEVTVLDLVTLMIIFSDNTATNVLIDLLG--- 129

Query: 156 KKFAILMSNKAKKIGMQNT 174
                 ++   +++G ++T
Sbjct: 130 ---IEEINRTIRRLGYRDT 145


>gi|222152213|ref|YP_002561388.1| exported protein [Streptococcus uberis 0140J]
 gi|222113024|emb|CAR40336.1| putative exported protein [Streptococcus uberis 0140J]
          Length = 428

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 9/130 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           M S+ + K  YS  V  +      G   D+  Y AS+ K+ TLY +   +++ K  LN  
Sbjct: 196 MLSQKYNKENYSIFVKQLTTQTSAGINADKLMYSASIAKLATLYYVQNKIETGKTSLNQT 255

Query: 104 IPVSKTA----ATQNPSKLY----LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
           +  +          +PS         +   +T +  + A+   S N  +   G +++   
Sbjct: 256 LKYTDQVNHFKGDYDPSGSGKLPKTSDNENYTVDDLLKAVAQHSDNVATNILGYYLANQY 315

Query: 156 K-KFAILMSN 164
              F+  M+ 
Sbjct: 316 DRDFSTQMTA 325


>gi|325695770|gb|EGD37669.1| beta-lactamase [Streptococcus sanguinis SK150]
          Length = 427

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 9/127 (7%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----V 106
           K  YS  V  ++  +  G  QD+  Y AS+TK+  LY + E L  KKL L+ +      V
Sbjct: 202 KADYSIYVKQLDTGKEAGINQDQEMYSASVTKLPYLYYVQEQLDQKKLSLDQKFKYIGAV 261

Query: 107 SKTAATQNPSKLYLKEKT----YFTTEQGILALITRSANDVSTAFGEF-ISGSEKKFAIL 161
           +  A    P       K+     ++ +  I  +   S N      G +  + S+K F   
Sbjct: 262 NDFAGAYEPEGSGSIAKSADDKEYSVQDLINRVAKESDNVAHNILGYYATNQSDKNFQQT 321

Query: 162 MSNKAKK 168
           +S  A K
Sbjct: 322 ISKIAGK 328


>gi|295695658|ref|YP_003588896.1| Beta-lactamase class A-like protein [Bacillus tusciae DSM 2912]
 gi|295411260|gb|ADG05752.1| Beta-lactamase class A-like protein [Bacillus tusciae DSM 2912]
          Length = 318

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 66/181 (36%), Gaps = 24/181 (13%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKLHLNTQIPVSKT 109
              Y  +V+D++         +   + AS  K+ M LY+ +  +   K+  NT++ + + 
Sbjct: 84  PGAYGVVVVDLDSGAKLDIDGNRVFFAASTFKLPMNLYL-YTLIAQGKVDPNTKL-IYEA 141

Query: 110 AATQNPSK--LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
           +  ++ +         T +T  Q   A I  S N  +    + +          +    +
Sbjct: 142 SDYEDGTGWIASTPVGTEYTIRQLSQASIVASDNVATNILLDDLG------VDNVKAFMR 195

Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLR---KNFPQYYK--YFSIRKFRYRNR 222
           ++G +  +        D + +TT  D A+  + L    K  P         +    + +R
Sbjct: 196 QLGGKQVV--------DGDNVTTPDDMALYAVKLFEFAKKHPTVAAPLIDDLEHTDFNDR 247

Query: 223 I 223
           I
Sbjct: 248 I 248


>gi|85708858|ref|ZP_01039924.1| Putative beta-lactamase [Erythrobacter sp. NAP1]
 gi|85690392|gb|EAQ30395.1| Putative beta-lactamase [Erythrobacter sp. NAP1]
          Length = 374

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 9/121 (7%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT--QNPSK 117
           DV   ++  F  DE     S+TK+         +    L+L  ++ + +   T    P +
Sbjct: 77  DVETGELYEFNGDELLPQQSVTKLWVAMAALSQVDQGDLNLTERVRIGRDDLTLFHQPVR 136

Query: 118 LYLKEKTYF--TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             +K +  +           ITRS N  +      I G +      +       G+    
Sbjct: 137 EIVKARGSYDTNYRDLFERSITRSDNTANDRLLRRIGGPDA-----VQQWLDDKGLTGIR 191

Query: 176 Y 176
           +
Sbjct: 192 F 192


>gi|37521956|ref|NP_925333.1| hypothetical protein glr2387 [Gloeobacter violaceus PCC 7421]
 gi|35212955|dbj|BAC90328.1| glr2387 [Gloeobacter violaceus PCC 7421]
          Length = 417

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 79/242 (32%), Gaps = 26/242 (10%)

Query: 59  IDVNKNQMTGFKQDEPRYPASLTKMMTLYII--FEYLQSKKLHLNTQIPVSKTAATQNPS 116
           ++    +       E    AS+ K+    ++     + S +L L+  + + +        
Sbjct: 175 VEPASGRYVAMADGESFSAASVIKV--PVLVEFLRQVDSGRLKLDDTLILRQEHKGGGSG 232

Query: 117 KL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
            + Y+      +       +I RS N  +    + + G     A  ++ +  + G++ T 
Sbjct: 233 WMQYMPNGKRMSAYNVARLMIVRSDNTATNMIIDLVGG-----ADYLNAQFGRWGLRTTR 287

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII---TNHNKLL- 231
                   +    T+  D A+L   L +            + R +   +   T    LL 
Sbjct: 288 INAPLPDLEGTNTTSPADMALLLTELER------GRLVTTQMRAKGYELMGRTRTGSLLP 341

Query: 232 -NKMHNIDGI-KTGYTRN-SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288
                    + KTG      G   V ++       VAV +      +R  +A +LI    
Sbjct: 342 VGLGPGAKILHKTGDIGKMVGDAAVVTMP-DGRRYVAVALVERPHNDR--RANQLIAKLS 398

Query: 289 EK 290
           +K
Sbjct: 399 QK 400


>gi|282900734|ref|ZP_06308676.1| Penicillin-binding protein, transpeptidase [Cylindrospermopsis
           raciborskii CS-505]
 gi|281194534|gb|EFA69489.1| Penicillin-binding protein, transpeptidase [Cylindrospermopsis
           raciborskii CS-505]
          Length = 515

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 57/145 (39%), Gaps = 14/145 (9%)

Query: 58  VIDVNKN---QMTGFKQDEPRYPASLTKMMTLYIIF-EYLQSKKLHLNTQIPVSKTAATQ 113
           ++D++      ++G K       AS  K+  + + F E +   K+ L+  + + +     
Sbjct: 211 IVDIDSGGYVDVSGNKNFSA---ASTIKI-PVLVAFLEDVDRGKIRLDEILTMEQEMVAG 266

Query: 114 NPSKLY-LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
               L  +   T   + +    ++T S N  +      + G E     L++ + +  G+ 
Sbjct: 267 GSGNLRTMPVGTKLKSIEVATKMMTISDNTATNMLISKLGGKE-----LLNARFRSWGLV 321

Query: 173 NTIYKNASGLHDKNQITTARDQAIL 197
           NT  ++     +    T+ ++ A L
Sbjct: 322 NTAIQSPLPDLEGTNTTSPKELASL 346


>gi|148241830|ref|YP_001226987.1| Beta-lactamase family protein [Synechococcus sp. RCC307]
 gi|147850140|emb|CAK27634.1| Beta-lactamase family protein [Synechococcus sp. RCC307]
          Length = 344

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 59/147 (40%), Gaps = 14/147 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMT--LYIIFEYLQSKKLHLNTQIPVSKTA 110
           K  + V+ ++         D P   AS  K  T  L + FE L   KL LN  + ++KT 
Sbjct: 91  KVGAFVLVLDDGTFAQLHPDRPLSAASSIK--TPILLVAFEALDQAKLSLNEALSLNKTV 148

Query: 111 ATQNPSKLYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                  +  +   + F+  +    +I  S N  +    + + G +      ++ +  ++
Sbjct: 149 VGGGAGWMGSQPLGSQFSIFEVATEMIRVSDNTATNLLIQRLGGKDS-----LNARFIEL 203

Query: 170 GMQNTIYKNASGLHD--KNQITTARDQ 194
           G++ T+  N   L D      TT RDQ
Sbjct: 204 GLEGTVINNW--LPDLKGTNTTTPRDQ 228


>gi|332669074|ref|YP_004452082.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Cellulomonas fimi ATCC 484]
 gi|332338112|gb|AEE44695.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Cellulomonas fimi ATCC 484]
          Length = 470

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 16/132 (12%)

Query: 52  PKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI--PVSK 108
           P    +V D    ++      D+ R PAS  K++T     + L    + L T++  P  +
Sbjct: 93  PSVGVVVADQLTGEVLASHLADQGRTPASTAKLVTAVAALQTLGP-DVTLPTRVVQPDGE 151

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                    + L             A +   A  V+         S              
Sbjct: 152 RVVLVGGGDMMLAAGEGDPDATVGHAGLADLAAQVARELALQGRTSVA------------ 199

Query: 169 IGMQNTIYKNAS 180
           +G  ++++   S
Sbjct: 200 LGFDDSLFTGPS 211


>gi|254521673|ref|ZP_05133728.1| beta-lactamase [Stenotrophomonas sp. SKA14]
 gi|219719264|gb|EED37789.1| beta-lactamase [Stenotrophomonas sp. SKA14]
          Length = 342

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 15/82 (18%)

Query: 71  QDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNT-------------QIPVSKTAATQNPS 116
             + RYP AS+TKM+T  + F+ ++  +L L+              QI V    A  +  
Sbjct: 62  DADTRYPIASVTKMVTAILAFKLIEEGRLSLDDHLSDFFPDMPSAQQITVGHLLAHTSGL 121

Query: 117 KLY-LKEKTYFTTEQGILALIT 137
             + +K+   +  ++   A I 
Sbjct: 122 GNFAIKDGAVWVVDEVSQARIL 143


>gi|302385071|ref|YP_003820893.1| beta-lactamase [Clostridium saccharolyticum WM1]
 gi|302195699|gb|ADL03270.1| beta-lactamase [Clostridium saccharolyticum WM1]
          Length = 281

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 37/123 (30%), Gaps = 11/123 (8%)

Query: 64  NQMTGFKQDEPRYPASLTKMMTLYII--FEYLQSKKLHLNTQIPV-SKTAATQNPSKLYL 120
             +     DE    AS  K  T  +   F+ ++     L   I    +     +     L
Sbjct: 31  GNVISVHADETFETASAIK--TYILACLFDEVEKGNKSLEDMIQYREEHVVDGSGVLGAL 88

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           +       +     +I  S N  +    +++          ++   K +G ++T+  N  
Sbjct: 89  EPGAMLRVKDAATFMIIVSDNIATNMIIDYLG------MDTINRCIKALGFKDTVLYNPI 142

Query: 181 GLH 183
              
Sbjct: 143 HFD 145


>gi|227511610|ref|ZP_03941659.1| possible beta-lactamase class A [Lactobacillus buchneri ATCC 11577]
 gi|227085104|gb|EEI20416.1| possible beta-lactamase class A [Lactobacillus buchneri ATCC 11577]
          Length = 326

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 100/258 (38%), Gaps = 25/258 (9%)

Query: 40  IMISMASELHAKPKYSSIVI-DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKL 98
           I+ + +  + A    +SI + +++            R  AS+ K+  +   F  +++ +L
Sbjct: 71  ILTAESQCVAASSGKTSIYVSELDSKNSVVENNRVQRS-ASVIKIFIMIEAFRQIKAGQL 129

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
            LN Q+ +          +L  +     + +Q +  +I  S N  +    + + G     
Sbjct: 130 TLNQQVIIPADDRVGGTGELANQNTHQLSVKQLLRLMIRNSDNTATNVLIDKLGG----- 184

Query: 159 AILMSNKAKKIGMQNTIYKNAS----GLHD-KNQITTARDQAILGILLRKN----FPQYY 209
             +++ +  ++G  +T  +        L + K+ +T+  D     + L  +     P  Y
Sbjct: 185 LAVINAEINRLGCSHTKLRRKMLDYRALQNGKDNVTSVSDLGKTLMALSGHRLLGHP--Y 242

Query: 210 KYFSIRKFRYRNRIITNHNKL--LNKMHNIDGIKTG-YTRNSGFNIVTSLRYKDDPIVAV 266
               ++  RY     +N +KL  L     +   KTG +      N    ++      V V
Sbjct: 243 DSEMLQLLRYN----SNQSKLSALISRKAVIYNKTGEFPDYGVQNDAAIVKKGKRAFVVV 298

Query: 267 VMGMPTSQERDQKALELI 284
           V+    +Q++   A++++
Sbjct: 299 VLSENGTQQKQINAMQML 316


>gi|116491873|ref|YP_803608.1| Beta-lactamase class A [Pediococcus pentosaceus ATCC 25745]
 gi|116102023|gb|ABJ67166.1| Beta-lactamase class A [Pediococcus pentosaceus ATCC 25745]
          Length = 391

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 84/225 (37%), Gaps = 24/225 (10%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAATQNPSKLYLKEKTYFTTE 129
             + +  AS  K+  L   ++ +   KL+LN +  +              +   +  + +
Sbjct: 166 NSKAQRAASNIKLFILITAYQQVNEGKLNLNDKYTLKDSDKVDGTGEIRNMSSGSEISMQ 225

Query: 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI----YKNASGLHD- 184
             +  ++  S N  +      + G        ++ + KKIG ++T       +   L D 
Sbjct: 226 DLLEDMMEDSDNTAANIVIRQLGG-----MDKVNAQIKKIGAKDTKLERMLMDTDALKDG 280

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII---TNHNKLLNKMHNIDGI- 240
           K+  T+  D   LG++L+K +   ++  S +       I+    NH KL + +     + 
Sbjct: 281 KDNYTSVAD---LGMVLKKIYN--HQMVSTKYDNAMLDILKKNNNHTKLPHDLPEEATVY 335

Query: 241 -KTGYTRNSG-FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
            KTG   + G  N            V VVM       RD++  ++
Sbjct: 336 NKTGEFDDYGVENDAAIFGNNKGSFVIVVM--SQDGSRDEQIKKM 378


>gi|24378542|ref|NP_720497.1| hypothetical protein SMU.12 [Streptococcus mutans UA159]
 gi|24376390|gb|AAN57803.1|AE014853_10 conserved hypothetical protein [Streptococcus mutans UA159]
          Length = 404

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 8/110 (7%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT- 109
           KP YS  V  +   +  G  +D+  Y AS+TK+  LY I + ++  ++ L  +    +  
Sbjct: 179 KPNYSIYVKQLKTRKTAGINEDKSMYSASVTKLPILYFIEKQIKDGRVKLTDKFKYIEQV 238

Query: 110 -----AATQNPSK-LYLKE-KTYFTTEQGILALITRSANDVSTAFGEFIS 152
                A     S  +  K    Y+T +  + A+   S N  S   G +I+
Sbjct: 239 NQFKGAYKVEGSGEMPKKADNKYYTVDSLLKAVTQHSDNVASNILGYYIA 288


>gi|46143200|ref|ZP_00204410.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 154

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 250 FNIVTSL-RYKDDPIVAVVMGMPTSQERDQKALELITSFL-EKKTLKHQQTHR 300
            N+V S     +  +++VVMG+ T + R+ ++ +L+       +T K  Q ++
Sbjct: 1   HNLVASAVNNNNMRLISVVMGVATHKGREIESKKLLQWGFANFETFKSLQANQ 53


>gi|254520163|ref|ZP_05132219.1| predicted protein [Clostridium sp. 7_2_43FAA]
 gi|226913912|gb|EEH99113.1| predicted protein [Clostridium sp. 7_2_43FAA]
          Length = 298

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 89/278 (32%), Gaps = 61/278 (21%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS------------IVIDVNKNQMTGFK- 70
           +++   L+  +L LS    +   E+    K ++            I  D   N    +K 
Sbjct: 1   MKKVYILLIVVLILSFQGCAQKEEVKEIEKSNAKTNSIIDKKVDEIAGDYKDNMSIYYKS 60

Query: 71  ---------QDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-- 118
                      +  Y A S TK+    +I + +    + L   I   +   ++  S +  
Sbjct: 61  LNTDDEYILNPDKYYIAASTTKIPLCMMILDQVFEGAISLEDTI-YYEKLDSEGGSGVLY 119

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
           YL+E    T E+ I   I  S N            S   +   ++               
Sbjct: 120 YLQEIPNITVEEAIYLSIVESDNITKNMLHRISKISLTDYLRDITEDDSI---------- 169

Query: 179 ASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-----IRKFRYRNRIITNHNKLLNK 233
                      TAR    +   L +N P    Y+      +++  + +R        L+K
Sbjct: 170 PY-----ENYITARQLYKVLERLYEN-PDNNPYYEKLIEYMKETVFHDR--------LDK 215

Query: 234 M--HNIDGIKTG-YTRNSGFNIVTSLRYKDDPIVAVVM 268
              ++I   K G Y R +    +   +   DP + VV+
Sbjct: 216 YLPYDIVAHKIGDYYRYAHDCGIIYAK---DPYIIVVL 250


>gi|303228855|ref|ZP_07315668.1| conserved hypothetical protein [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516475|gb|EFL58404.1| conserved hypothetical protein [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 271

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 71/181 (39%), Gaps = 24/181 (13%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQ----MTGFKQDEPRYPASLTKMMTLYI--IF 90
           L I + ++   L +    S +V  +N+ +    +   K+      AS+ K  TL +  +F
Sbjct: 10  LEIQLAALLDTLPSDATVSYMVTRLNEGEEATIVASSKETIVHTGASMVK--TLILEYVF 67

Query: 91  EYLQSKKLHLNTQIPVSKTAATQN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
                ++L LN  I +S++   +   + + L     F+  +    ++  S N  +    +
Sbjct: 68  HLAAQEQLDLNDTIALSRSPRVEGAGALMELVGNHSFSYLELCRLMMVLSDNWATNLLIQ 127

Query: 150 FISGSEKKFAILMSNKAKKIGMQ-------NTIYKNASGLHDKNQITTARDQAILGILLR 202
            +          ++ +A+++G++          +       ++    TA D A+L   + 
Sbjct: 128 ALG------MENINARAEQLGLEYFEINRMMMDFTAVKE--NRENYITAMDMAVLLHHIY 179

Query: 203 K 203
           +
Sbjct: 180 E 180


>gi|221229304|gb|ABO61006.2| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 303

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 50/156 (32%), Gaps = 11/156 (7%)

Query: 9   SAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSI----------- 57
            A++ FL +   ++     + L+ +    +       + + A   ++++           
Sbjct: 2   LARRRFLQFSGAAVASSFALPLLARAAGKATANAPTDAAITAASDFAALEKACAGRLGVT 61

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ++D    +  G +QDE     S  K M    +    +     L+ ++PV +     +   
Sbjct: 62  LLDTASGRRIGHRQDERFPMCSTFKSMLAATVLSQAERMPALLDRRVPVGEADLLSHAPV 121

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                    T      A I  S N  +      + G
Sbjct: 122 TRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGG 157


>gi|33240595|ref|NP_875537.1| Beta-lactamase class A [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238123|gb|AAQ00190.1| Beta-lactamase class A [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 345

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 10/139 (7%)

Query: 71  QDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKE-KTYFTT 128
                 PA S  K+  L I  + + S +L  N ++ ++K    +    +  +     F  
Sbjct: 108 NSNQIAPAASTIKIPILLICLKMVGSGELKWNEKVTLTKDDVAEGSGWIRYQPLGKEFFI 167

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN--ASGLHDKN 186
            +    +I  S N  +      I G        ++ +   IG++ T   +     L   N
Sbjct: 168 HEIATEMIRVSDNTATNLLIRKIGG-----INTINQRFNMIGLKATKINSLLPD-LQGTN 221

Query: 187 QITTARDQAILGILLRKNF 205
             TT     IL + L+KNF
Sbjct: 222 TTTTKELVKILELALKKNF 240


>gi|282881915|ref|ZP_06290560.1| beta-lactamase [Peptoniphilus lacrimalis 315-B]
 gi|281298190|gb|EFA90641.1| beta-lactamase [Peptoniphilus lacrimalis 315-B]
          Length = 262

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 58/144 (40%), Gaps = 12/144 (8%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119
           D++  +     +D+    AS+ K++ +  I    ++ K+ L+T+I V K       S + 
Sbjct: 28  DLDDEEGFFINEDKKVRSASMIKLLIMAEIMNQSKNGKISLDTKIKVGKKD-KVGGSGI- 85

Query: 120 LKEKT---YFTTEQGILALITRSANDVSTAFGEFISGSEKKFA-ILMSNKAKKI--GMQN 173
           LKE      F+ ++ +  +I  S N  +    + +           ++ K+  +   M +
Sbjct: 86  LKEFDCEHEFSIKELMTLMIIVSDNQATNILIDLVGMDNINLMGKRLNLKSASLQRKMMD 145

Query: 174 TIYKNASGLHDKNQITTARDQAIL 197
                      ++   +A+D  ++
Sbjct: 146 IKALEK----GRDNYISAKDVKVI 165


>gi|209558596|ref|YP_002285068.1| hypothetical protein Spy49_0010 [Streptococcus pyogenes NZ131]
 gi|209539797|gb|ACI60373.1| hypothetical protein Spy49_0010 [Streptococcus pyogenes NZ131]
          Length = 428

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 13/119 (10%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            P YS  V  +N     G   D+  Y AS++K+  LYI+ + LQ KKL  N  +  +K  
Sbjct: 203 NPNYSIFVKQLNTQTSAGINADKKMYAASISKLAPLYIVQKQLQKKKLAENKTLTYTKDV 262

Query: 111 ----------ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKF 158
                      +   SK+   +   +  E  + A+  +S N  +   G ++    +K F
Sbjct: 263 NHFYGDYDPLGSGKISKIP--DNKDYRVEDLLKAVAQQSDNVATNILGYYLCHQYDKAF 319


>gi|288904235|ref|YP_003429456.1| hypothetical protein GALLO_0012 [Streptococcus gallolyticus UCN34]
 gi|306832495|ref|ZP_07465647.1| beta-lactamase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325977212|ref|YP_004286928.1| beta-lactamase [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|288730960|emb|CBI12504.1| conserved hypothetical exported protein [Streptococcus gallolyticus
           UCN34]
 gi|304425395|gb|EFM28515.1| beta-lactamase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325177140|emb|CBZ47184.1| beta-lactamase [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 428

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 8/115 (6%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----V 106
           K  YS  V  ++     G   D   Y AS+ K+ TLY + E LQ   +  N  +     V
Sbjct: 203 KSNYSIYVKQLSTQTTAGINADTVMYSASVAKLATLYYVEEKLQDGTISANDTLKYVDAV 262

Query: 107 SKTAATQNPSKLY----LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           +  A   +PS         +   +T +  + A+   S N  +   G +++     
Sbjct: 263 NSFAKAYDPSGSGKISKTADNKEYTIDDLLKAVAQNSDNVATNILGYYVANQYDD 317


>gi|72382536|ref|YP_291891.1| putative beta-lactamase [Prochlorococcus marinus str. NATL2A]
 gi|72002386|gb|AAZ58188.1| putative beta-lactamase [Prochlorococcus marinus str. NATL2A]
          Length = 357

 Score = 50.6 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 8/142 (5%)

Query: 65  QMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-YLKE 122
           Q+    K D     AS  K+  L I+   L+ K++  N ++ +S+         + Y + 
Sbjct: 106 QVYAEIKSDIKLSAASSIKVPILIILLRMLEKKEIIWNEKLILSEDVIGGGSGWMAYQEI 165

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
              F   +    +I  S N  +    + + G       +++ K K+IG+ NT   N    
Sbjct: 166 GEIFPVYEVASEMIRVSDNTATNLLIKRLGG-----IKIVNQKFKEIGLNNTQINNYLPD 220

Query: 183 HDKNQITTARDQAILGILLRKN 204
            D   +T+ +D + L + L  N
Sbjct: 221 LDGTNLTSTKDLS-LAMALVDN 241


>gi|254431801|ref|ZP_05045504.1| beta-lactamase [Cyanobium sp. PCC 7001]
 gi|197626254|gb|EDY38813.1| beta-lactamase [Cyanobium sp. PCC 7001]
          Length = 333

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 65/168 (38%), Gaps = 11/168 (6%)

Query: 32  GKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYII-- 89
            K+  LS     +A+          +++ ++  +    + D+    AS  K  T  ++  
Sbjct: 57  KKLTALSESWARLAAAQQGLQASGFLLV-LDDGRYAELQADQALPAASSIK--TPILLAG 113

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKE-KTYFTTEQGILALITRSANDVSTAFG 148
            E + + K+  N  +P++K         +  +   T F   +    +I  S N  +    
Sbjct: 114 LEDVDAGKIRWNEPLPLTKEVVGGGAGWMASRPVGTRFPFFESATEMIRVSDNSATNLLI 173

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
           + + G EK     ++ + + +G+  T+  N     +    T+ARD A 
Sbjct: 174 KRLGGKEK-----LNARFQALGLPATVINNWLPDLEGTNTTSARDLAK 216


>gi|94984424|ref|YP_603788.1| beta-lactamase [Deinococcus geothermalis DSM 11300]
 gi|94554705|gb|ABF44619.1| beta-lactamase [Deinococcus geothermalis DSM 11300]
          Length = 315

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 20/153 (13%)

Query: 64  NQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY--L 120
            +       +  +P AS  K+  L +     Q+ +L L+ ++ +         + +   L
Sbjct: 62  GRELYALNPDRVFPAASTIKVPLLLLALSEAQAGRLDLSGRVTLRAED-RVPGAGVLHEL 120

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
                 T +  +  +I  S N  +    E +          +++   + G+  T      
Sbjct: 121 MPGLAPTWQDLLTLMIVVSDNTATNLVIERLG------LDRVNDWLGERGLSGTQLVGLL 174

Query: 181 GLH----------DKNQITTARDQAILGILLRK 203
            L            +   TTARDQ  L   L +
Sbjct: 175 QLPLERQNAAQRRGERNRTTARDQVALLGALVR 207


>gi|300774221|ref|ZP_07084088.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300758900|gb|EFK55729.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 416

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 62/179 (34%), Gaps = 24/179 (13%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKL---HLNTQIPVS-----KTAATQNPSKLYLKEKTYFT 127
           YPAS  K+ T  +  E +    +     +T + +      +T   ++ S     E    +
Sbjct: 80  YPASTVKLPTAILALEKINELNIKGLTKDTPLKIDSAFEKQTLVDRDSSS----ESGLPS 135

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             Q +  ++  S ND      EFI   E      ++ K KK G +N+   N   + DK  
Sbjct: 136 VGQYVRKILLTSDNDAQNRLFEFIGREE------LNKKLKKYGTRNSRIVNRLAIGDKGI 189

Query: 187 -----QITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI 240
                   T  D   +       +        ++        +   ++++ +  + +G+
Sbjct: 190 WAKHTNPVTFYDGDKILYHQEARYDASDYPMDLKNTVQGKGYMNEKDEIVYQPWSFEGL 248


>gi|89069277|ref|ZP_01156640.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Oceanicola granulosus HTCC2516]
 gi|89045153|gb|EAR51221.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Oceanicola granulosus HTCC2516]
          Length = 516

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 53  KYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYL 93
             S+ V D+   ++  G+  DE   PAS+TK MT     E L
Sbjct: 71  SVSAAVADIETGELIEGYAADEGLPPASVTKAMTALYALETL 112


>gi|103485670|ref|YP_615231.1| Beta-lactamase [Sphingopyxis alaskensis RB2256]
 gi|98975747|gb|ABF51898.1| Beta-lactamase [Sphingopyxis alaskensis RB2256]
          Length = 388

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLKEKTYFTTEQGILA 134
           S++K+     + + +   +L L+ ++ +     T       +++  +     +    I  
Sbjct: 125 SVSKLWVALTVLDAVDQGRLTLDQRVRIGPEDLTLFYQPIAARVRAEGSVTLSVRDLIEI 184

Query: 135 LITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIG 170
            IT+S N  + +    + G +   +F       A + G
Sbjct: 185 AITQSDNTANDSLLRTVGGPDAVRRFIAKKDLGAIRFG 222


>gi|94989519|ref|YP_597619.1| Beta-lactamase [Streptococcus pyogenes MGAS10270]
 gi|94543027|gb|ABF33075.1| Beta-lactamase [Streptococcus pyogenes MGAS10270]
          Length = 428

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 9/117 (7%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            P YS  V  +N     G   D+  Y AS++K+  LYI+ + LQ KKL  N  +  +K  
Sbjct: 203 NPNYSIFVKQLNTQTSAGINADKKMYAASISKLAPLYIVQKQLQKKKLAENKTLTYTKDV 262

Query: 111 ----ATQNPSKLY----LKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKF 158
                  +P        + +   +  E  + A+  +S N  +   G ++    +K F
Sbjct: 263 NHFYGDYDPLGSGKISKIADNKDYRVEDLLKAVAQQSDNVATNILGYYLCHQYDKAF 319


>gi|94993406|ref|YP_601504.1| beta-lactamase [Streptococcus pyogenes MGAS10750]
 gi|94546914|gb|ABF36960.1| Beta-lactamase [Streptococcus pyogenes MGAS10750]
          Length = 428

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 9/117 (7%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            P YS  V  +N     G   D+  Y AS++K+  LYI+ + LQ KKL  N  +  +K  
Sbjct: 203 NPNYSIFVKQLNTQTSAGINADKKMYAASISKLAPLYIVQKQLQKKKLAENKTLTYTKDV 262

Query: 111 ----ATQNPSKLY----LKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKF 158
                  +P        + +   +  E  + A+  +S N  +   G ++    +K F
Sbjct: 263 NHFYGDYDPLGSGKISKIADNKDYRVEDLLKAVAQQSDNVATNILGYYLCHQYDKAF 319


>gi|33863404|ref|NP_894964.1| putative beta-lactamase [Prochlorococcus marinus str. MIT 9313]
 gi|33640853|emb|CAE21308.1| putative beta-lactamase [Prochlorococcus marinus str. MIT 9313]
          Length = 386

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 53/147 (36%), Gaps = 14/147 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTL--YIIFEYLQSKKLHLNTQIPVSKTA 110
           + S+ ++ ++  +      +     AS  K  T    +  E + S +L  N  + ++K  
Sbjct: 117 QASAFLLVLDDGRYAELSAETALPAASSIK--TAILLVALELIDSGQLSWNEPLKLTKEI 174

Query: 111 ATQNPSKLYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                  +  K   + F   +    +I  S N  +    + I G       +++ +   +
Sbjct: 175 IGGGAGWMASKPLGSQFPAHEVATEMIRVSDNTATNLLIQRIGGK-----DVLNARFNAL 229

Query: 170 GMQNTIYKNASGLHD--KNQITTARDQ 194
           G+ +T     + L D      T++ D 
Sbjct: 230 GLSST--VVNNWLPDLQGTNTTSSHDL 254


>gi|50913356|ref|YP_059328.1| Beta-lactamase [Streptococcus pyogenes MGAS10394]
 gi|50902430|gb|AAT86145.1| Beta-lactamase [Streptococcus pyogenes MGAS10394]
          Length = 428

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 9/117 (7%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            P YS  V  +N     G   D+  Y AS++K+  LYI+ + LQ KKL  N  +  +K  
Sbjct: 203 NPNYSIFVKQLNTQTSAGINADKKMYAASISKLAPLYIVQKQLQKKKLAENKTLTYTKDV 262

Query: 111 ----ATQNPSKLY----LKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKF 158
                  +P        + +   +  E  + A+  +S N  +   G ++    +K F
Sbjct: 263 NHFYGDYDPLGSGKISKIADNKDYRVEDLLKAVAQQSDNVATNILGYYLCHQYDKAF 319


>gi|15674259|ref|NP_268432.1| hypothetical protein SPy_0012 [Streptococcus pyogenes M1 GAS]
 gi|71909824|ref|YP_281374.1| beta-lactamase [Streptococcus pyogenes MGAS5005]
 gi|13621334|gb|AAK33154.1| hypothetical protein SPy_0012 [Streptococcus pyogenes M1 GAS]
 gi|71852606|gb|AAZ50629.1| beta-lactamase [Streptococcus pyogenes MGAS5005]
          Length = 428

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 9/117 (7%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            P YS  V  +N     G   D+  Y AS++K+  LYI+ + LQ KKL  N  +  +K  
Sbjct: 203 NPNYSIFVKQLNTQTSAGINADKKMYAASISKLAPLYIVQKQLQKKKLAENKTLTYTKDV 262

Query: 111 ----ATQNPSKLY----LKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKF 158
                  +P        + +   +  E  + A+  +S N  +   G ++    +K F
Sbjct: 263 NHFYGDYDPLGSGKISKIADNKDYRVEDLLKAVAQQSDNVATNILGYYLCHQYDKAF 319


>gi|19745209|ref|NP_606345.1| hypothetical protein spyM18_0011 [Streptococcus pyogenes MGAS8232]
 gi|71902677|ref|YP_279480.1| hypothetical protein M28_Spy0010 [Streptococcus pyogenes MGAS6180]
 gi|94987641|ref|YP_595742.1| beta-lactamase [Streptococcus pyogenes MGAS9429]
 gi|94991507|ref|YP_599606.1| Beta-lactamase [Streptococcus pyogenes MGAS2096]
 gi|139472898|ref|YP_001127613.1| hypothetical protein SpyM50010 [Streptococcus pyogenes str.
           Manfredo]
 gi|306826401|ref|ZP_07459715.1| beta-lactamase [Streptococcus pyogenes ATCC 10782]
 gi|19747298|gb|AAL96844.1| hypothetical protein spyM18_0011 [Streptococcus pyogenes MGAS8232]
 gi|71801772|gb|AAX71125.1| conserved hypothetical protein [Streptococcus pyogenes MGAS6180]
 gi|94541149|gb|ABF31198.1| beta-lactamase [Streptococcus pyogenes MGAS9429]
 gi|94545015|gb|ABF35062.1| Beta-lactamase [Streptococcus pyogenes MGAS2096]
 gi|134271144|emb|CAM29354.1| putative exported protein [Streptococcus pyogenes str. Manfredo]
 gi|304431396|gb|EFM34391.1| beta-lactamase [Streptococcus pyogenes ATCC 10782]
          Length = 428

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 9/117 (7%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            P YS  V  +N     G   D+  Y AS++K+  LYI+ + LQ KKL  N  +  +K  
Sbjct: 203 NPNYSIFVKQLNTQTSAGINADKKMYAASISKLAPLYIVQKQLQKKKLAENKTLTYTKDV 262

Query: 111 ----ATQNPSKLY----LKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKF 158
                  +P        + +   +  E  + A+  +S N  +   G ++    +K F
Sbjct: 263 NHFYGDYDPLGSGKISKIADNKDYRVEDLLKAVAQQSDNVATNILGYYLCHQYDKAF 319


>gi|220910129|ref|YP_002485440.1| beta-lactamase [Cyanothece sp. PCC 7425]
 gi|219866740|gb|ACL47079.1| beta-lactamase [Cyanothece sp. PCC 7425]
          Length = 442

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 64/147 (43%), Gaps = 12/147 (8%)

Query: 59  IDVNKNQMTGFKQDEPRYPASLTKMMTLYIIF-EYLQSKKLHLNTQIPV-SKTAATQNPS 116
           +D++         D+    AS+ K+  + + F + + + K+ L+ ++ +  +  A+ +  
Sbjct: 203 LDMDNGNYVDLNGDKIFPAASIIKL-PILVAFFQAVDAGKVRLDEKLTLRPELFASGSGE 261

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
             + +  T F+ +     +I  S N  +    + + G       +++ + +  G++ T+ 
Sbjct: 262 MQFQRPWTQFSAQYTAAQMIIISDNTATNLILKRLGGP-----GVLNQQFRSWGLKQTVI 316

Query: 177 KNASGLHD--KNQITTARDQAILGILL 201
           +N   L D      TTAR+   L  LL
Sbjct: 317 RNW--LPDLSGTNTTTARELVNLLTLL 341


>gi|313894580|ref|ZP_07828143.1| conserved hypothetical protein [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313440770|gb|EFR59199.1| conserved hypothetical protein [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 272

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 77/205 (37%), Gaps = 34/205 (16%)

Query: 47  ELHAKPKYSSIVI---DVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNT 102
           EL      S +V+   D  +  +   + +   +  ASL K++ +  +F   ++++L LN 
Sbjct: 20  ELAPTGNISYVVLQFDDEEEPTLIASRGEHTVHSSASLIKVLIMEYVFHLARAEQLDLND 79

Query: 103 QIPVSKTAATQNPSKLY-LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
            +P+SKT   +    L  L  K  FT  +    ++  S N  +      +          
Sbjct: 80  TVPLSKTPRVEGGGALQELVGKHSFTYLELCRLMMVLSDNIATNLLITVLG------MEN 133

Query: 162 MSNKAKKIGMQ----NTIYKNASGLHD-KNQITTARDQAILGILL--------------- 201
           ++ +A+K+G+     N +  +   L + ++   TA   A L   +               
Sbjct: 134 INARAEKLGVDEIELNRMMMDFDALAEGRDNHMTAMALARLYKHIFEYRDRDAYGCEMWN 193

Query: 202 ---RKNFPQYYKYFSIRKFRYRNRI 223
              R+ F     ++     R+ ++ 
Sbjct: 194 ILGRQQFRDILPFYWGEGIRFHHKT 218


>gi|257057524|ref|YP_003135356.1| D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family
           [Saccharomonospora viridis DSM 43017]
 gi|256587396|gb|ACU98529.1| D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family
           [Saccharomonospora viridis DSM 43017]
          Length = 517

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 13/81 (16%)

Query: 58  VIDVNKNQMTGFKQ-DEPRYPASLTKMMT---LYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           V+D         +  D+   PAS TK++T     ++ ++        + + P +K  A  
Sbjct: 146 VVDPATGTTLWERNADQALAPASTTKLLTSAAALLVLDH--------DMRFP-TKVVAGA 196

Query: 114 NPSKLYLKEKTYFTTEQGILA 134
            P  + L      T       
Sbjct: 197 EPGTVVLVGGGDVTLSSLPEG 217


>gi|467187|gb|AAA17345.1| pbpC [Mycobacterium leprae]
          Length = 182

 Score = 49.9 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 42  ISMASELHAKP----KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSK 96
           I  A +    P      + +V D+N   +   +    R+ PAS+ K+    +    + + 
Sbjct: 89  IVTAPDTPPVPGDLSAEAWLVADLNSGAVIAARDPHGRHRPASIIKV---LLAMASINT- 144

Query: 97  KLHLNTQIPVSKTAATQNPSKLYLKE 122
            L+LN  +  +   A    +K+ + E
Sbjct: 145 -LNLNKSVAGTAEDAAAEGTKVGVHE 169


>gi|311895900|dbj|BAJ28308.1| putative hydrolase [Kitasatospora setae KM-6054]
          Length = 276

 Score = 49.9 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 53/170 (31%), Gaps = 34/170 (20%)

Query: 52  PKYSSIVIDVNKNQMTGFK--QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           P  ++ V+  +   + G    QD     AS+TK+++ Y +   ++     L+        
Sbjct: 13  PHAAAAVVRGSDGALLGAHGPQDHLFPLASVTKLLSAYAVLVAVEEGVFELDDP------ 66

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSAND------------VSTAFGEFISGSEKK 157
            A    S +                ++    N              +      I      
Sbjct: 67  -AGPAGSTVRHLLAHTSGLAFDEHRVMAEPGNRRLYSNAGFDVLAAALESASGIP----- 120

Query: 158 FAILMSNKAKK-IGMQ----NTIYKNASGLHDKNQITTARDQAILGILLR 202
           FA   +    + +GM     NT ++  +G      ++TA D A     L+
Sbjct: 121 FARYAAEAVFQPLGMHATLINTAHRAPAG---AGGLSTAADLARFAAELQ 167


>gi|326386583|ref|ZP_08208205.1| Beta-lactamase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208898|gb|EGD59693.1| Beta-lactamase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 325

 Score = 49.5 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 10/164 (6%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKN-QMTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           L+I     A    A+ +     +D++   Q+     D P   AS  K+         ++ 
Sbjct: 45  LAIQRTVEAIVARARGRVGVAAVDLDGGGQVLV-NGDMPFPMASTAKVAVAATFLAGVEQ 103

Query: 96  KKLHLNTQIPVSKTAATQNPSKL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
            +  L+ Q+P+    A ++ S +  ++     T +Q +  +ITRS N  +      + G 
Sbjct: 104 GRHRLDQQLPMMMPVAERSHSAVAAVRPGPVMTAQQLMELMITRSNNHATDGLIAAVGG- 162

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGL--HDKNQITTARDQAI 196
                  +++   K G+      +       D   I  A+    
Sbjct: 163 ----IGAVNSWLSKNGIVGQHLDSTMATLVRDDGHINPAKTIDT 202


>gi|317401229|gb|EFV81873.1| beta-lactamase class A-like protein [Achromobacter xylosoxidans
           C54]
          Length = 287

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/154 (11%), Positives = 54/154 (35%), Gaps = 17/154 (11%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           D++   +     D  +  AS+ K  ++   +  E + + +  L   + +         + 
Sbjct: 39  DLDGGTVLAHHADRVQPSASIIKVPILLALL--EAVANGRYALEQPLALPACGDRAGGTG 96

Query: 118 L--YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           +   L      +  +    +I  S N  + A  + +      F   ++  +++ G+  + 
Sbjct: 97  ILAQLPSVASLSLAELARLMIVLSDNAATNALIDLLG-----F-DAINQWSQRAGLAASR 150

Query: 176 YK-----NASGLHDKNQITTARDQAILGILLRKN 204
            +      A+    ++  T+A D       + ++
Sbjct: 151 LQRRMMDAAAREAGRDNFTSADDATAALCWMLRD 184


>gi|56808857|ref|ZP_00366568.1| COG2367: Beta-lactamase class A [Streptococcus pyogenes M49 591]
          Length = 428

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 13/119 (10%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            P YS  V  +N     G   D+  Y AS++K+  LYI+ + LQ K+L  N  +  +K  
Sbjct: 203 NPNYSIFVKQLNTQTSAGINADKKMYAASISKLAPLYIVQKQLQKKELAENKTLTYTKDV 262

Query: 111 ----------ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKF 158
                      +   SK+   +   +  E  + A+  +S N  +   G ++    +K F
Sbjct: 263 NHFYGDYDPLGSGKISKIP--DNKDYRVEDLLKAVAQQSDNVATNILGYYLCHQYDKAF 319


>gi|124022606|ref|YP_001016913.1| beta-lactamase [Prochlorococcus marinus str. MIT 9303]
 gi|123962892|gb|ABM77648.1| putative beta-lactamase [Prochlorococcus marinus str. MIT 9303]
          Length = 386

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 46/125 (36%), Gaps = 10/125 (8%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTL--YIIFEYLQSKKLHLNTQIPVSKTA 110
           + S+ ++ ++  +      +     AS  K  T    +  E + S +L  N  + ++K  
Sbjct: 117 QASAFLLVLDDGRYAELSPETALPAASSIK--TAILLVALELIDSGQLSWNEPLKLTKEI 174

Query: 111 ATQNPSKLYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                  +  K   + F   +    +I  S N  +    + I G       +++ +   +
Sbjct: 175 IGGGAGWMASKPLGSQFPAHEVATEMIRVSDNTATNLLIQRIGGK-----DVLNARFNAL 229

Query: 170 GMQNT 174
           G+ +T
Sbjct: 230 GLSST 234


>gi|323965322|gb|EGB60780.1| beta-lactamase [Escherichia coli M863]
 gi|323976145|gb|EGB71238.1| beta-lactamase [Escherichia coli TW10509]
          Length = 385

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L   +L  +++    A++   +P+++S                     +VID N
Sbjct: 1   MKRSL-LFSAVLCAALLTPVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSELLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++     T  T    
Sbjct: 117 -PPGARVPTYNGTPITLVNL 135


>gi|253582701|ref|ZP_04859922.1| beta-lactamase [Fusobacterium varium ATCC 27725]
 gi|251835571|gb|EES64111.1| beta-lactamase [Fusobacterium varium ATCC 27725]
          Length = 257

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 80/214 (37%), Gaps = 34/214 (15%)

Query: 76  YPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL--YLKEKTYFTTEQGI 132
           YPA SL K+    I++E   + K +L+ +I ++          +  YL      +     
Sbjct: 46  YPAASLIKL---PILYELFNNSKYNLDEKIEITLKD-KVGGFGIIQYLHNNVKLSLRDLA 101

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA--------SGLHD 184
           + +I  S N  +      I G        ++   KK+G+++T  +           GL  
Sbjct: 102 ILMIILSDNTATNIL-IDICG-----MDNINFTLKKLGLKDTKLRRKMMDLKSKNMGLD- 154

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGY 244
               T+  D   L  +L KN     +  SI K +  N  I+     + K  +    KTG 
Sbjct: 155 --NYTSPYDMIKLLEVLNKN----EEIISIMKKQLCNNKIS---HFIEKKIDF-AHKTGD 204

Query: 245 TRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQ 278
                 + V     +D  I+ VVM     + RD+
Sbjct: 205 LPQIEHD-VGIFDIEDKKIIVVVM-TKNFENRDE 236


>gi|269929322|ref|YP_003321643.1| beta-lactamase [Sphaerobacter thermophilus DSM 20745]
 gi|269788679|gb|ACZ40821.1| beta-lactamase [Sphaerobacter thermophilus DSM 20745]
          Length = 269

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 19/161 (11%)

Query: 51  KPKYSSIVI-DVNKNQMTGFKQDEPRYPASLTKMMTLYII--FEYLQSKKLHLNTQIPVS 107
            P    +VI D+   +   +  +     AS+ K+    ++      +   + L+  +PV 
Sbjct: 18  APGTVGLVIEDLTTGERLEWSPETQFLAASIIKI--PILVEGLRQAEEGTVRLDQMVPVP 75

Query: 108 KTAATQNPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
             A       +   L   T  +    +  +I  S N  +      + G        ++  
Sbjct: 76  DDA-KVGGFGILKELTSVTSISLLDLLTLMIIVSDNTATN-LCIDVLG-----VESINRT 128

Query: 166 AKKIGMQNTIYKNA---SGLHDKN--QITTARDQAILGILL 201
              +G+  T  +         D+     TT  D A L  L+
Sbjct: 129 IASLGLTGTQLQRKMMDYEARDRGLENFTTPADVARLLRLI 169


>gi|78184292|ref|YP_376727.1| beta-lactamase family protein [Synechococcus sp. CC9902]
 gi|78168586|gb|ABB25683.1| possible beta-lactamase family protein [Synechococcus sp. CC9902]
          Length = 388

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 59/164 (35%), Gaps = 11/164 (6%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYI--IFE 91
           I  LS   I  A+        + ++I ++  +      + P   AS  K  T  +  + E
Sbjct: 109 ITALSQRWIQQAATQPDLQVSAYMLI-LDDGRFAQMHANRPMPAASSIK--TPILLAVLE 165

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPSKLYLKE-KTYFTTEQGILALITRSANDVSTAFGEF 150
            +    L  N  + ++K         +  +   T F T +    +I  S N  +T     
Sbjct: 166 RIDQGTLQWNEPLTLTKELVGGGAGWMASRPLGTRFPTYEVATEMIRVSDN-SATNLMIA 224

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +G +      ++ + + + +  T+  N     D    T+ARD 
Sbjct: 225 RAGGQDA----INARFQALDLPATVVNNWLPDLDGTNTTSARDL 264


>gi|134096833|ref|YP_001102494.1| putative alanine rich lipoprotein LppW [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291005122|ref|ZP_06563095.1| putative alanine rich lipoprotein LppW [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133909456|emb|CAL99568.1| putative conserved alanine rich lipoprotein LppW [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 236

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 50/156 (32%), Gaps = 36/156 (23%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
             +V+D    ++   +    R+  AS+ K+    I  ++L                    
Sbjct: 7   GYLVVDAASGRVLSERDPRRRFRSASIVKI---LIALDHL-------------------- 43

Query: 114 NPSKLYLKEKTYFTTEQ-GILALITRSAN-DVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
               L L        +   +L  + R++N D ++   E           ++   A  +G+
Sbjct: 44  ----LELGPGGDIPDDDRALLGPMLRASNDDAASTLWERAGQR-----AVIDRMAPALGL 94

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
           ++T    A          +A D   + + L  + P 
Sbjct: 95  RDTE-PPADEGMWGYTAISAADVVRIYLHLLHDAPD 129


>gi|290958430|ref|YP_003489612.1| peptidoglycan carboxypeptidase [Streptomyces scabiei 87.22]
 gi|260647956|emb|CBG71061.1| putative peptidoglycan carboxypeptidase [Streptomyces scabiei
           87.22]
          Length = 549

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 37  LSIIMISMASELHAK---PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEY 92
              +  ++   L A    P+ ++ V+DV   +    +  D+   PAS TK+ T       
Sbjct: 160 AGALAAALDPFLKAPVLGPRRAAAVVDVKTGERLYAQNADDALTPASTTKIATAVAALSA 219

Query: 93  L 93
           +
Sbjct: 220 V 220


>gi|260887395|ref|ZP_05898658.1| beta-lactamase [Selenomonas sputigena ATCC 35185]
 gi|330840053|ref|YP_004414633.1| hypothetical protein Selsp_2228 [Selenomonas sputigena ATCC 35185]
 gi|260862864|gb|EEX77364.1| beta-lactamase [Selenomonas sputigena ATCC 35185]
 gi|329747817|gb|AEC01174.1| hypothetical protein Selsp_2228 [Selenomonas sputigena ATCC 35185]
          Length = 321

 Score = 49.1 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 56/141 (39%), Gaps = 17/141 (12%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL--YLKEKTYFTT 128
            DE R  AS+ K+  L    E +++ +LHL+  + + +       + +    +  T F+ 
Sbjct: 102 ADEMRA-ASMIKVFILACAMEKVKAGELHLDDVLRL-EEVDKVGGAGVITGYRAGTVFSV 159

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK--- 185
           E+ +  +I  S N  +    + +  +E      ++   +  G   +  +    + D    
Sbjct: 160 EELLRQMIAESDNTATNMMIDRLGMTE------INGYMRAHGYDASRLQRKM-MDDAAVK 212

Query: 186 ---NQITTARDQAILGILLRK 203
                IT+A+D     + L +
Sbjct: 213 EGRENITSAKDLGTFFLRLYR 233


>gi|260435239|ref|ZP_05789209.1| beta-lactamase family protein [Synechococcus sp. WH 8109]
 gi|260413113|gb|EEX06409.1| beta-lactamase family protein [Synechococcus sp. WH 8109]
          Length = 381

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 58/157 (36%), Gaps = 11/157 (7%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKL 98
            + +A++       + ++I ++  +    + + P   AS  K  T  +  + E L    L
Sbjct: 109 WLELAAQQSDLQASAYMLI-LDDGRFAAMQAERPMAAASSIK--TPILLAVLELLDQGTL 165

Query: 99  HLNTQIPVSKTAATQNPSKLYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
             N  + +++         +  +   + F T +    +I  S N  +        G    
Sbjct: 166 QWNEPLTLTEELVGGGAGWMASRPLGSRFPTHEVATEMIRVSDNSATNLMIARAGG---- 221

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
               ++ + +++ + +T+  N     D    T+ARD 
Sbjct: 222 -MDAINARFQELDLPSTVVNNWLPDLDGTNTTSARDL 257


>gi|124026237|ref|YP_001015353.1| putative beta-lactamase [Prochlorococcus marinus str. NATL1A]
 gi|123961305|gb|ABM76088.1| putative beta-lactamase [Prochlorococcus marinus str. NATL1A]
          Length = 357

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 8/142 (5%)

Query: 65  QMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-YLKE 122
           Q+    K D     AS  K+  L I+   L+ +++  N ++ +S+         + Y + 
Sbjct: 106 QVYAEIKSDIKLSAASSIKVPILIILLRMLEKEEIIWNEKLILSEDVIGGGSGWIAYQEI 165

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
              F   +    +I  S N  +    + + G        ++ K K+IG+ NT   N    
Sbjct: 166 GEIFPVYEVASEMIRVSDNTATNLLIKRLGG-----IKRVNQKFKEIGLNNTQINNYLPD 220

Query: 183 HDKNQITTARDQAILGILLRKN 204
            D   +T+ +D + L + L  N
Sbjct: 221 LDGTNLTSTKDLS-LAMALVDN 241


>gi|116071062|ref|ZP_01468331.1| possible beta-lactamase family protein [Synechococcus sp. BL107]
 gi|116066467|gb|EAU72224.1| possible beta-lactamase family protein [Synechococcus sp. BL107]
          Length = 358

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 58/161 (36%), Gaps = 11/161 (6%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYI--IFEYLQ 94
           LS   I  A+        + ++I ++  +        P   AS  K  T  +  + E + 
Sbjct: 82  LSQRWIQQAATQPDLQVSAYMLI-LDDGRFAQMNAHRPMPAASSIK--TPILLAVLERID 138

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISG 153
              L  N  + ++K         +  +   + F T +    +I  S N  +T      +G
Sbjct: 139 QGTLQWNEPLTLTKELVGGGAGWMASRPLGSRFPTYEVATEMIRVSDN-SATNLMIARAG 197

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
            +      ++ + + + + +T+  N     D    T+ARD 
Sbjct: 198 GQDA----INARFQALDLPSTVVNNWLPDLDGTNTTSARDL 234


>gi|254302127|ref|ZP_04969485.1| beta-lactamase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148322319|gb|EDK87569.1| beta-lactamase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 261

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 58/155 (37%), Gaps = 20/155 (12%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           D+NKN       D+    AS+ K  ++T     + +   K  L+  I +           
Sbjct: 28  DLNKNNGFSINGDKKVLSASMIKLLILTEL--MKKISEDKFSLSDTIMM-ANFMKTGGDG 84

Query: 118 LY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           +   L    +FT ++    +I  S N  +    +F+          ++   K++G++ + 
Sbjct: 85  VLKELNAGHHFTLKELATLMIIVSDNQATNILIDFLG------MENINLLGKELGLKES- 137

Query: 176 YKNASGLHDK------NQITTARDQAILGILLRKN 204
           +     +  +      +  T A D ++L  L+ + 
Sbjct: 138 FLGRKMMDTEARKNGYDNYTCADDISLLFKLIYQE 172


>gi|157151309|ref|YP_001451361.1| hypothetical protein SGO_2136 [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157076103|gb|ABV10786.1| conserved hypothetical protein [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 426

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 8/99 (8%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT------AATQN 114
           +N  +  G  QD   Y AS+TK+  LY   E L   K+ L   +   +       A    
Sbjct: 211 LNTGKTAGINQDTEMYSASVTKLPILYYAQEELNQGKITLAQGLKYIQDVNDYSGAYDTE 270

Query: 115 PSKLYLKEKT--YFTTEQGILALITRSANDVSTAFGEFI 151
            S    KE     ++ +  I  +   S N  +   G ++
Sbjct: 271 GSGSLPKEADNKEYSVQDLINHIAKESDNAATNILGYYV 309


>gi|294793404|ref|ZP_06758549.1| putative beta-lactamase [Veillonella sp. 6_1_27]
 gi|294795223|ref|ZP_06760357.1| putative beta-lactamase [Veillonella sp. 3_1_44]
 gi|294454015|gb|EFG22390.1| putative beta-lactamase [Veillonella sp. 3_1_44]
 gi|294455835|gb|EFG24200.1| putative beta-lactamase [Veillonella sp. 6_1_27]
          Length = 272

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 66/170 (38%), Gaps = 30/170 (17%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-LKEKTYFTTEQGILALI 136
           ASL K++ +  +F   ++++L +N  +P+S+T   +    L  L  K  FT  +    ++
Sbjct: 55  ASLIKVLIMEYVFHLARTEQLDINDTVPLSRTPRVEGGGALQELVGKHSFTYLELCRLMM 114

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ----NTIYKNASGLHD-KNQITTA 191
             S N  +      +          ++ +A+K+GM     N +  + + L + ++   TA
Sbjct: 115 VLSDNIATNLLITVLG------MENINARAEKLGMDEMELNRMMMDFNALAEGRDNHITA 168

Query: 192 RDQAILGILL------------------RKNFPQYYKYFSIRKFRYRNRI 223
              A L   +                  R+ F     ++     R+ ++ 
Sbjct: 169 MSLARLYKHIFECRDRDAYGREMWNILGRQQFRDILPFYWGEGIRFHHKT 218


>gi|300813348|ref|ZP_07093699.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300512491|gb|EFK39640.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 262

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 53/134 (39%), Gaps = 12/134 (8%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKT---YF 126
            +D+    AS+ K++ +  I    ++ K+ L+T+I V K       S + LKE      F
Sbjct: 38  NEDKKVRSASMIKLLIMAEIMNQSKNGKISLDTKIKVGKKD-KVGGSGI-LKEFDCEHEF 95

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFA-ILMSNKAKKI--GMQNTIYKNASGLH 183
           + ++ +  +I  S N  +    + +           ++ K+  +   M +          
Sbjct: 96  SIKELMTLMIIVSDNQATNILIDLVGMDNINLMGKRLNLKSASLQRKMMDIKALEK---- 151

Query: 184 DKNQITTARDQAIL 197
            ++   +A D  ++
Sbjct: 152 GRDNYISAIDVKVI 165


>gi|190575578|ref|YP_001973423.1| putative beta-lactamase [Stenotrophomonas maltophilia K279a]
 gi|10242340|gb|AAG15385.1|AF299368_1 L2 beta-lactamase [Stenotrophomonas maltophilia]
 gi|190013500|emb|CAQ47135.1| putative beta-lactamase [Stenotrophomonas maltophilia K279a]
 gi|221229307|gb|ABO61008.2| L2 beta-lactamase [Stenotrophomonas maltophilia]
 gi|221229310|gb|ABO61009.2| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 303

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 5/119 (4%)

Query: 40  IMISMASELHAKPKYSS-----IVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQ 94
             I+ AS+  A  K  +      ++D    +  G +QDE     S  K M    +    +
Sbjct: 39  AAITAASDFAALEKACAGRLGVTLLDTASGRRIGHRQDERFPMCSTFKSMLAATVLSQAE 98

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                L+ ++PV +     +            T      A I  S N  +      + G
Sbjct: 99  RMPALLDRRVPVGEADLLSHAPVTRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGG 157


>gi|94498210|ref|ZP_01304771.1| Beta-lactamase class A [Sphingomonas sp. SKA58]
 gi|94422340|gb|EAT07380.1| Beta-lactamase class A [Sphingomonas sp. SKA58]
          Length = 382

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 39/104 (37%), Gaps = 3/104 (2%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-SKL 118
           D+   +      D     AS  K+     IF  + +  + L+ Q+ +    A++   + +
Sbjct: 94  DLQTGETQAINGDTLFPMASAYKVAVAGRIFALIDAGDVRLDDQLALDPALASEGGIAWM 153

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAI 160
           + +     + ++ +  ++ +S N+ +        G  +   F  
Sbjct: 154 FSRPGASLSVQRLLELMLQKSDNNATDVLVARAGGPAAITHFVK 197


>gi|66968595|ref|YP_245472.1| class-A beta-lactamase [Pseudomonas aeruginosa]
 gi|66862677|emb|CAI46978.1| Class-A beta-lactamase [Pseudomonas aeruginosa]
          Length = 293

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 57/167 (34%), Gaps = 7/167 (4%)

Query: 11  KKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMA-SELHAKPKYSSIVIDVNKNQMTGF 69
           +  FL+ P   +     I      +   I+ +++   E   + +    VID +       
Sbjct: 4   QCHFLSVPVAILGCVGLICTSAYAMDTGILDLAVTQEETTLQARVGVAVIDTDSGLTWQH 63

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLYLKEKTYFTT 128
           + DE     S  K  +   +       KL+L   IP+ +TA  T +P    +      T 
Sbjct: 64  RGDERFPLNSTHKAFSCAAVLAQADRHKLNLEQAIPIERTALVTYSPVTERVPPGGTLTL 123

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
            +   A ++ S N  +        G  + F    +   + IG   T 
Sbjct: 124 RELCRAAVSISDNTAAN-LALDAIGGARTF----TAFMRSIGDDKTR 165


>gi|324114598|gb|EGC08566.1| beta-lactamase [Escherichia fergusonii B253]
          Length = 385

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 52/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L+   L    I  + A +  A P+++S                     +VID N
Sbjct: 1   MKRSL-LLSAALCAVFITPAQAVQPIADPQFASDIVDRYAEHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     AS+TK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSFGETRPGNNVRPQLDSVIRIASITKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++   + T  T    
Sbjct: 117 -PPGARVPTYQGTPITLVNL 135


>gi|15805460|ref|NP_294156.1| beta-lactamase [Deinococcus radiodurans R1]
 gi|6458117|gb|AAF10013.1|AE001903_1 beta-lactamase, putative [Deinococcus radiodurans R1]
          Length = 277

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 52/153 (33%), Gaps = 20/153 (13%)

Query: 64  NQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY--L 120
            +    +  +  +P AS  K+  L    E      L L  ++ +         + +   L
Sbjct: 27  GRELYAQAADAVFPAASTIKVPLLLFALEQAGRGDLDLIERVTLRAED-RVPGAGVLHEL 85

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
                 T +  +  +I  S N  +    E +   +  F + ++ +    G+ +T      
Sbjct: 86  GLGLALTWQDVLTLMIVVSDNTATNLLIERLG--QDHFNLWLTAR----GLNSTRLIGPL 139

Query: 181 GLHDKNQ----------ITTARDQAILGILLRK 203
            L  + Q           TTARDQ  L + L +
Sbjct: 140 QLPPERQNEAQRRGERNRTTARDQVALLLSLLR 172


>gi|38492524|pdb|1N4O|A Chain A, Crystal Structure Of The Class A Beta-Lactamase L2 From
           Stenotrophomonas Maltophilia
 gi|38492525|pdb|1N4O|B Chain B, Crystal Structure Of The Class A Beta-Lactamase L2 From
           Stenotrophomonas Maltophilia
 gi|46015008|pdb|1O7E|A Chain A, Crystal Structure Of The Class A Beta-Lactamse L2 From
           Stenotrophomonas Maltophilia At 1.51 Angstrom
 gi|46015009|pdb|1O7E|B Chain B, Crystal Structure Of The Class A Beta-Lactamse L2 From
           Stenotrophomonas Maltophilia At 1.51 Angstrom
          Length = 276

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 5/119 (4%)

Query: 40  IMISMASELHAKPKYSS-----IVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQ 94
             I+ AS+  A  K  +      ++D    +  G +QDE     S  K M    +    +
Sbjct: 12  AAITAASDFAALEKACAGRLGVTLLDTASGRRIGHRQDERFPMCSTFKSMLAATVLSQAE 71

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                L+ ++PV +     +            T      A I  S N  +      + G
Sbjct: 72  RMPALLDRRVPVGEADLLSHAPVTRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGG 130


>gi|76786907|ref|YP_328739.1| hypothetical protein SAK_0012 [Streptococcus agalactiae A909]
 gi|77405633|ref|ZP_00782722.1| protein of unknown function [Streptococcus agalactiae H36B]
 gi|76561964|gb|ABA44548.1| conserved hypothetical protein [Streptococcus agalactiae A909]
 gi|77175777|gb|EAO78557.1| protein of unknown function [Streptococcus agalactiae H36B]
          Length = 428

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 8/104 (7%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKTAATQNPS 116
           +N   + G   D   Y AS+ K+ TLY   E ++  KL L+++      V++   + +PS
Sbjct: 213 LNTQTVAGINIDRSMYSASIAKLATLYASQEQVKLGKLSLDSKFEYKDNVNQFPNSYDPS 272

Query: 117 KLYLKEK----TYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
                EK      +T ++ + A    S N  +   G +++    
Sbjct: 273 GSGKLEKKADHKLYTVKELLEATAKESDNVATNMLGYYVNNQYD 316


>gi|6580703|emb|CAB63490.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
 gi|22549339|emb|CAD44949.1| beta-lactamase L2 precursor [Stenotrophomonas maltophilia]
 gi|160548115|gb|ABX44761.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 303

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 5/119 (4%)

Query: 40  IMISMASELHAKPKYSS-----IVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQ 94
             I+ AS+  A  K  +      ++D    +  G +QDE     S  K M    +    +
Sbjct: 39  AAITAASDFAALEKACAGRLGVTLLDTASGRRIGHRQDERFPMCSTFKSMLAATVLSQAE 98

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                L+ ++PV +     +            T      A I  S N  +      + G
Sbjct: 99  RMPALLDRRVPVGEADLLSHAPVTRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGG 157


>gi|118470558|ref|YP_890308.1| beta-lactamase [Mycobacterium smegmatis str. MC2 155]
 gi|118171845|gb|ABK72741.1| beta-lactamase [Mycobacterium smegmatis str. MC2 155]
          Length = 439

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 32/88 (36%), Gaps = 8/88 (9%)

Query: 65  QMTGFKQDEPRYP-ASLTKMMTLYIIF---EYLQSKKLHLNTQIPVSKTAATQNPSKLY- 119
           ++      +   P AS+ K+   Y++    + ++   L  + ++ ++K       + L  
Sbjct: 163 EVVAGTNTDLSLPLASIFKL---YVLLAVSDAIKEGTLSWDDKLTITKDGKALGSAGLDK 219

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAF 147
           L      T       +I+ S N  +   
Sbjct: 220 LPPGAQITVRTAAQQMISASDNMATDLL 247


>gi|77407719|ref|ZP_00784474.1| protein of unknown function [Streptococcus agalactiae COH1]
 gi|77173718|gb|EAO76832.1| protein of unknown function [Streptococcus agalactiae COH1]
          Length = 428

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 8/104 (7%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKTAATQNPS 116
           +N   + G   D   Y AS+ K+ TLY   E ++  KL L+++      V++   + +PS
Sbjct: 213 LNTQTVAGINIDRSMYSASIAKLATLYASQEQVKLGKLSLDSKFEYKDNVNQFPNSYDPS 272

Query: 117 KLYLKEK----TYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
                EK      +T ++ + A    S N  +   G +++    
Sbjct: 273 GSGKLEKKADHKLYTVKELLEATAKESDNVATNMLGYYVNNQYD 316


>gi|22536198|ref|NP_687049.1| hypothetical protein SAG0013 [Streptococcus agalactiae 2603V/R]
 gi|25010087|ref|NP_734482.1| hypothetical protein gbs0012 [Streptococcus agalactiae NEM316]
 gi|76797981|ref|ZP_00780240.1| conserved hypothetical protein [Streptococcus agalactiae 18RS21]
 gi|77414472|ref|ZP_00790622.1| protein of unknown function [Streptococcus agalactiae 515]
 gi|22533015|gb|AAM98921.1|AE014191_13 protein of unknown function [Streptococcus agalactiae 2603V/R]
 gi|23094438|emb|CAD45657.1| unknown [Streptococcus agalactiae NEM316]
 gi|76586661|gb|EAO63160.1| conserved hypothetical protein [Streptococcus agalactiae 18RS21]
 gi|77159482|gb|EAO70643.1| protein of unknown function [Streptococcus agalactiae 515]
 gi|319746209|gb|EFV98478.1| beta-lactamase [Streptococcus agalactiae ATCC 13813]
          Length = 428

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 8/104 (7%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----VSKTAATQNPS 116
           +N   + G   D   Y AS+ K+ TLY   E ++  KL L+++      V++   + +PS
Sbjct: 213 LNTQTVAGINIDRSMYSASIAKLATLYASQEQVKLGKLSLDSKFEYKDNVNQFPNSYDPS 272

Query: 117 KLYLKEK----TYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
                EK      +T ++ + A    S N  +   G +++    
Sbjct: 273 GSGKLEKKADHKLYTVKELLEATAKESDNVATNMLGYYVNNQYD 316


>gi|254521343|ref|ZP_05133398.1| beta-lactamase [Stenotrophomonas sp. SKA14]
 gi|219718934|gb|EED37459.1| beta-lactamase [Stenotrophomonas sp. SKA14]
          Length = 304

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 1/97 (1%)

Query: 58  VIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           V+D    + + G +QDE     S  K M +  +     + ++ L+T++P+++        
Sbjct: 62  VLDTGSGRSIGGHRQDERFPMCSTFKSMLVAHVLSLADAGRVSLDTRVPIAEQDLLSYAP 121

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                     T        +T S N  +    + + G
Sbjct: 122 VARRHVGKDLTVRDLCRGTLTTSDNTAANLLLDVVGG 158


>gi|163311071|pdb|3BFD|A Chain A, Crystal Structure Of The Class A Beta-Lactamase Sed-G238c
           Mutant From Citrobacter Sedlakii
 gi|163311072|pdb|3BFD|B Chain B, Crystal Structure Of The Class A Beta-Lactamase Sed-G238c
           Mutant From Citrobacter Sedlakii
 gi|163311073|pdb|3BFD|C Chain C, Crystal Structure Of The Class A Beta-Lactamase Sed-G238c
           Mutant From Citrobacter Sedlakii
 gi|163311074|pdb|3BFD|D Chain D, Crystal Structure Of The Class A Beta-Lactamase Sed-G238c
           Mutant From Citrobacter Sedlakii
          Length = 263

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 3/111 (2%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
            + +Q+   + DE     S +K+MT   + +  ++    L  ++ + K   T        
Sbjct: 28  ADNSQVLY-RADERFAMCSTSKVMTAAAVLKQSETHDGILQQKMTIKKADLTNWNPVTEK 86

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
                 T  +   A +  S N         +   G+   FA  + +   ++
Sbjct: 87  YVGNTMTLAELSAATLQYSDNTAMNKLLAHLGGPGNVTAFARSIGDTTFRL 137


>gi|163311067|pdb|3BFC|A Chain A, Class A Beta-Lactamase Sed-G238c Complexed With Imipenem
 gi|163311068|pdb|3BFC|B Chain B, Class A Beta-Lactamase Sed-G238c Complexed With Imipenem
 gi|163311069|pdb|3BFC|C Chain C, Class A Beta-Lactamase Sed-G238c Complexed With Imipenem
 gi|163311070|pdb|3BFC|D Chain D, Class A Beta-Lactamase Sed-G238c Complexed With Imipenem
 gi|163311079|pdb|3BFF|A Chain A, Class A Beta-Lactamase Sed-G238c Complexed With Faropenem
 gi|163311080|pdb|3BFF|B Chain B, Class A Beta-Lactamase Sed-G238c Complexed With Faropenem
 gi|163311081|pdb|3BFF|C Chain C, Class A Beta-Lactamase Sed-G238c Complexed With Faropenem
 gi|163311082|pdb|3BFF|D Chain D, Class A Beta-Lactamase Sed-G238c Complexed With Faropenem
 gi|163311083|pdb|3BFG|A Chain A, Class A Beta-Lactamase Sed-G238c Complexed With Meropenem
 gi|163311084|pdb|3BFG|B Chain B, Class A Beta-Lactamase Sed-G238c Complexed With Meropenem
 gi|163311085|pdb|3BFG|C Chain C, Class A Beta-Lactamase Sed-G238c Complexed With Meropenem
 gi|163311086|pdb|3BFG|D Chain D, Class A Beta-Lactamase Sed-G238c Complexed With Meropenem
          Length = 262

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 3/111 (2%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
            + +Q+   + DE     S +K+MT   + +  ++    L  ++ + K   T        
Sbjct: 27  ADNSQVLY-RADERFAMCSTSKVMTAAAVLKQSETHDGILQQKMTIKKADLTNWNPVTEK 85

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
                 T  +   A +  S N         +   G+   FA  + +   ++
Sbjct: 86  YVGNTMTLAELSAATLQYSDNTAMNKLLAHLGGPGNVTAFARSIGDTTFRL 136


>gi|290579536|ref|YP_003483928.1| hypothetical protein SmuNN2025_0010 [Streptococcus mutans NN2025]
 gi|254996435|dbj|BAH87036.1| hypothetical protein [Streptococcus mutans NN2025]
          Length = 411

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 8/110 (7%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT- 109
           KP YS  V  +   +  G  +D+  Y AS+TK+  LY I + ++  ++ L  +    +  
Sbjct: 186 KPNYSIYVKQLKTRKTAGINEDKSMYSASVTKLPILYFIEKQIKDSRVKLTDKFKYIEQV 245

Query: 110 -----AATQNPSK-LYLKE-KTYFTTEQGILALITRSANDVSTAFGEFIS 152
                A     S  +  K    Y+T +  + A+   S N  S   G +I+
Sbjct: 246 NQFKGAYKVEGSGEMPKKADNKYYTVDSLLKAVAQHSDNVASNILGYYIA 295


>gi|194366908|ref|YP_002029518.1| beta-lactamase [Stenotrophomonas maltophilia R551-3]
 gi|194349712|gb|ACF52835.1| Beta-lactamase [Stenotrophomonas maltophilia R551-3]
          Length = 303

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 52/156 (33%), Gaps = 11/156 (7%)

Query: 9   SAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSI----------- 57
            A++ FL +   ++     + L+ +    +   +   + + A   ++++           
Sbjct: 2   LARRRFLQFSGAAVASSLALPLLARATGKATANVPAEAAITAATDFAALEKACAGRLGVT 61

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ++D    +  G +QDE     S  K +    +    + +   L+T++PV       +   
Sbjct: 62  LLDTASGRRIGHRQDERFPMCSTFKSVLAATVLSQAERRPALLDTRVPVRDADLLSHAPV 121

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                    T      A I  S N  +      + G
Sbjct: 122 TRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGG 157


>gi|163311075|pdb|3BFE|A Chain A, Crystal Structure Of The Class A Beta-Lactamase Sed-1 From
           Citrobacter Sedlakii
 gi|163311076|pdb|3BFE|B Chain B, Crystal Structure Of The Class A Beta-Lactamase Sed-1 From
           Citrobacter Sedlakii
 gi|163311077|pdb|3BFE|C Chain C, Crystal Structure Of The Class A Beta-Lactamase Sed-1 From
           Citrobacter Sedlakii
 gi|163311078|pdb|3BFE|D Chain D, Crystal Structure Of The Class A Beta-Lactamase Sed-1 From
           Citrobacter Sedlakii
          Length = 262

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 3/111 (2%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
            + +Q+   + DE     S +K+MT   + +  ++    L  ++ + K   T        
Sbjct: 27  ADNSQVLY-RADERFAMCSTSKVMTAAAVLKQSETHDGILQQKMTIKKADLTNWNPVTEK 85

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
                 T  +   A +  S N         +   G+   FA  + +   ++
Sbjct: 86  YVGNTMTLAELSAATLQYSDNTAMNKLLAHLGGPGNVTAFARSIGDTTFRL 136


>gi|28894922|ref|NP_801272.1| hypothetical protein SPs0010 [Streptococcus pyogenes SSI-1]
 gi|28810167|dbj|BAC63105.1| hypothetical protein [Streptococcus pyogenes SSI-1]
          Length = 428

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 13/119 (10%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            P YS  V  +N     G   D+  Y AS++K+  LYI+ + LQ KKL  N  +   K  
Sbjct: 203 NPNYSIFVKQLNTQTSAGINADKKMYAASISKLAPLYIVQKQLQKKKLAENKTLTYIKDV 262

Query: 111 ----------ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKF 158
                      +   SK+   +   +  E  + A+  +S N  +   G ++    +K F
Sbjct: 263 NHFYGDYDPLGSGKISKIP--DNKDYRVEDLLKAVAQQSDNVATNILGYYLCHQYDKAF 319


>gi|254498292|ref|ZP_05111032.1| truncated beta-lactamase [Legionella drancourtii LLAP12]
 gi|254352454|gb|EET11249.1| truncated beta-lactamase [Legionella drancourtii LLAP12]
          Length = 281

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 18/144 (12%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT--QNP 115
            ID N      ++QDE     S  KM+   +  + +++     + +I +S          
Sbjct: 33  AIDTNNGNSFSYRQDERFPFQSTVKMLVAAVALKNIEA-----DERIKISSDDIVFWSPI 87

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
            +L L    Y T ++   A +  S N  +      + G+       ++  AK IG ++  
Sbjct: 88  VRLNLDRG-YMTIKELAEAAMRYSDNAATNILITRLGGT-----KSINEFAKSIGDRSFN 141

Query: 176 YKN--ASGLHDKNQ---ITTARDQ 194
            +N   +   D N     +T +D 
Sbjct: 142 LENLEPNLNSDPNNIHDSSTPKDM 165


>gi|221229313|gb|ABO61011.2| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 303

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 37/119 (31%), Gaps = 5/119 (4%)

Query: 40  IMISMASELHAKPKYSS-----IVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQ 94
             I+ AS+  A  K  +      ++D    +  G +QDE     S  K M         +
Sbjct: 39  AAITAASDFAALEKACAGRLGVTLLDTASGRRIGHRQDERFPMCSTFKSMLAATALSQAE 98

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                L+ ++PV +     +            T      A I  S N  +      + G
Sbjct: 99  RMPALLDRRVPVGEADLLSHAPVTRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGG 157


>gi|134133925|gb|ABO61020.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 298

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 37/119 (31%), Gaps = 5/119 (4%)

Query: 40  IMISMASELHAKPKYSS-----IVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQ 94
             I+ AS+  A  K  +      ++D    +  G +QDE     S  K M         +
Sbjct: 34  AAITAASDFAALEKACAGRLGVTLLDTASGRRIGHRQDERFPMCSTFKSMLAATALSQAE 93

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                L+ ++PV +     +            T      A I  S N  +      + G
Sbjct: 94  RMPALLDRRVPVGEADLLSHALVTRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGG 152


>gi|21909545|ref|NP_663813.1| hypothetical protein SpyM3_0009 [Streptococcus pyogenes MGAS315]
 gi|21903725|gb|AAM78616.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
          Length = 428

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 13/119 (10%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            P YS  V  +N     G   D+  Y AS++K+  LYI+ + LQ KKL  N  +   K  
Sbjct: 203 NPNYSIFVKQLNTQTSAGINADKKMYAASISKLAPLYIVQKQLQKKKLAENKTLTYIKDV 262

Query: 111 ----------ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKF 158
                      +   SK+   +   +  E  + A+  +S N  +   G ++    +K F
Sbjct: 263 NHFYGDYDPLGSGKISKIP--DNKDYRVEDLLKAVAQQSDNVATNILGYYLCHQYDKAF 319


>gi|146299863|ref|YP_001194454.1| beta-lactamase [Flavobacterium johnsoniae UW101]
 gi|146154281|gb|ABQ05135.1| beta-lactamase [Flavobacterium johnsoniae UW101]
          Length = 347

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 26/38 (68%)

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
             + ++   + AS+TKM+T  ++F+ +++ KL L+T++
Sbjct: 64  VHYNKNTEYHIASVTKMVTAILVFKLIENDKLKLDTKL 101


>gi|325498337|gb|EGC96196.1| beta-lactam binding protein AmpH [Escherichia fergusonii ECD227]
          Length = 388

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 52/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L+   L    I  + A +  A P+++S                     +VID N
Sbjct: 4   LKRSL-LLSAALCAVFITPAQAVQPIADPQFASDIVDRYAEHIFYGSGATGMALVVIDGN 62

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     AS+TK+MT  ++ + L    + LN   P+SK A 
Sbjct: 63  QRVFRSFGETRPGNNVRPQLDSVIRIASITKLMTSEMLVKLLDQGTVKLND--PLSKYA- 119

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++   + T  T    
Sbjct: 120 -PPGARVPTYQGTPITLVNL 138


>gi|78213467|ref|YP_382246.1| beta-lactamase family protein [Synechococcus sp. CC9605]
 gi|78197926|gb|ABB35691.1| possible beta-lactamase family protein [Synechococcus sp. CC9605]
          Length = 381

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 59/157 (37%), Gaps = 11/157 (7%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKL 98
            + +A++       + ++I ++  +    + + P   AS  K  T  +  + E L    L
Sbjct: 109 WLELAAQQSNLQASAYMLI-LDDGRFAAMQAERPMAAASSIK--TPILLAVLELLDQGTL 165

Query: 99  HLNTQIPVSKTAATQNPSKLYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
             N  + +++         +  +   + F T +    +I  S N  +        G E  
Sbjct: 166 QWNEPLTLTEELVGGGAGWMASRPLGSRFPTHEVATEMIRVSDNSATNLMIARAGGMEA- 224

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
               ++ + +++ + +T+  N     D    T+ARD 
Sbjct: 225 ----INARFQELDLPSTMVNNWLPDLDGTNTTSARDL 257


>gi|161504439|ref|YP_001571551.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865786|gb|ABX22409.1| hypothetical protein SARI_02551 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 385

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L    LF + +    A++  A P ++S                     +VID N
Sbjct: 1   MKRSL-LFTATLFATSVTSVQAAQPIADPVFASDIVDRYAEHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSFGETRPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++   + T  T    
Sbjct: 117 -PPGARVPTYKGTPITLVNL 135


>gi|167992214|ref|ZP_02573312.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|200390177|ref|ZP_03216788.1| beta-lactamase [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|308065971|ref|NP_459370.2| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|199602622|gb|EDZ01168.1| beta-lactamase [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205329550|gb|EDZ16314.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|312911406|dbj|BAJ35380.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225097|gb|EFX50158.1| Penicillin-binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323128689|gb|ADX16119.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 385

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 51/140 (36%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID-------VNKNQ------MTGFK 70
           ++R++ L   +LF + +    A++  A P ++S ++D                  +    
Sbjct: 1   MKRSL-LFTAMLFAASLTSVQAAQPIADPVFASDIVDRYAEHIFYGSGATGMALVVIDGN 59

Query: 71  Q-------------------DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           Q                   D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSFGDTRPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++   + T  T    
Sbjct: 117 -PPGARVPTYQGTPITLVNL 135


>gi|77411316|ref|ZP_00787665.1| protein of unknown function [Streptococcus agalactiae CJB111]
 gi|77162652|gb|EAO73614.1| protein of unknown function [Streptococcus agalactiae CJB111]
          Length = 428

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 8/104 (7%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
           +N   + G   D   Y AS+ K+ TLY   E ++  KL L+++            S    
Sbjct: 213 LNTQTVAGINIDRSMYSASIAKLATLYASQEQVKLGKLSLDSKFEYKDNVNQFPNSYAPS 272

Query: 121 KEK--------TYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
                        +T ++ + A    S N  +   G +++    
Sbjct: 273 GSGKLEKKADHKLYTVKELLEATAKESDNVATNMLGYYVNNQYD 316


>gi|260495804|ref|ZP_05815925.1| beta-lactamase [Fusobacterium sp. 3_1_33]
 gi|260196651|gb|EEW94177.1| beta-lactamase [Fusobacterium sp. 3_1_33]
          Length = 261

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 55/143 (38%), Gaps = 20/143 (13%)

Query: 72  DEPRYPASLTKMMTLYII--FEYLQSKKLHLNTQIPVSKTAATQNPSKLY--LKEKTYFT 127
           D+    AS+ K++   +    + +   K  L+  I V++ A       +   L    +FT
Sbjct: 40  DKKVLSASMIKLL--ILAELMKKVSENKFSLSDAITVTE-AMKTGGDGVLKELNSDHHFT 96

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-- 185
            ++    +I  S N  +    +F+          ++   +++ ++ T +     +  +  
Sbjct: 97  LKELATLMIIVSDNQATNILIDFLG------MKNINQLGRELDLKET-FLGRKMMDIEAR 149

Query: 186 ----NQITTARDQAILGILLRKN 204
               +  T A D ++L  L+ + 
Sbjct: 150 KKGYDNYTCADDISLLLKLIYQE 172


>gi|218549962|ref|YP_002383753.1| beta-lactam binding protein AmpH [Escherichia fergusonii ATCC
           35469]
 gi|218357503|emb|CAQ90142.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia fergusonii
           ATCC 35469]
          Length = 388

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 52/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L+   L    I  + A +  A P+++S                     +VID N
Sbjct: 4   LKRSL-LLSAALCAVFITPAQAVQPIADPQFASDIVDRYAEHIFYGSGATGMALVVIDGN 62

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     AS+TK+MT  ++ + L    + LN   P+SK A 
Sbjct: 63  QRVFRSFGETRPGNNVRPQLDSVIRIASITKLMTSEMLVKLLDQGTVKLND--PLSKYA- 119

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++   + T  T    
Sbjct: 120 -PPGARVPTYQGTPITLVNL 138


>gi|149377011|ref|ZP_01894762.1| probable beta-lactamase [Marinobacter algicola DG893]
 gi|149358669|gb|EDM47140.1| probable beta-lactamase [Marinobacter algicola DG893]
          Length = 353

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 41/114 (35%), Gaps = 4/114 (3%)

Query: 63  KNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLYLK 121
             Q      D+  Y AS  K+    ++ +  +++ L L  ++ +            L++ 
Sbjct: 59  TGQKVSHNIDQDWYLASTVKIPLAIVLMQRAENEGLDLEQKLTLRAADYVDGTGDLLWVD 118

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK-IGMQNT 174
               ++ E+     I  S +  +     F+   EK F   ++    + +G   T
Sbjct: 119 PGARYSLEELNRRSIVDSDSTATDMLIRFLG--EKSFGEDVARLVPEGLGPITT 170


>gi|14486653|gb|AAK63223.1| class A beta-lactamase Sed1 [Citrobacter sedlakii]
          Length = 295

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 3/111 (2%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
            + +Q+   + DE     S +K+MT   + +  ++    L  ++ + K   T        
Sbjct: 60  ADNSQVLY-RADERFAMCSTSKVMTAAAVLKQSETHDGILQQKMTIKKADLTNWNPVTEK 118

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
                 T  +   A +  S N         +   G+   FA  + +   ++
Sbjct: 119 YVGNTMTLAELSAATLQYSDNTAMNKLLAHLGGPGNVTAFARSIGDTTFRL 169


>gi|227494491|ref|ZP_03924807.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
           [Actinomyces coleocanis DSM 15436]
 gi|226832225|gb|EEH64608.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
           [Actinomyces coleocanis DSM 15436]
          Length = 451

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            + VID     +   + + +P  PAS TK+   ++  + L  +   L T+I
Sbjct: 92  GAYVIDAVTGNVVFAQNEMKPVVPASTTKVFAAFVALDALDPQD-TLETRI 141


>gi|120406301|ref|YP_956130.1| beta-lactamase [Mycobacterium vanbaalenii PYR-1]
 gi|119959119|gb|ABM16124.1| beta-lactamase [Mycobacterium vanbaalenii PYR-1]
          Length = 454

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 7/87 (8%)

Query: 65  QMTGFKQDEPRYPASLTKMMTLYIIF---EYLQSKKLHLNTQIPVSKTAATQNPSKLY-L 120
           ++ G   D     AS+ K+   Y++F   E +++  L     + +++ A     S    L
Sbjct: 182 KVAGTNTDTSLPLASIFKL---YVLFAVAEAVKADTLEWTDALTITEGAKAVGSSAFDEL 238

Query: 121 KEKTYFTTEQGILALITRSANDVSTAF 147
           +     +  +    +I+ S N  +   
Sbjct: 239 EPGATVSVREAAQQMISASDNMATDLL 265


>gi|161615448|ref|YP_001589413.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167551824|ref|ZP_02345577.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|168240186|ref|ZP_02665118.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|194448768|ref|YP_002044406.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|161364812|gb|ABX68580.1| hypothetical protein SPAB_03219 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194407072|gb|ACF67291.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|205323443|gb|EDZ11282.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205339903|gb|EDZ26667.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
          Length = 385

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 51/140 (36%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID-------VNKNQ------MTGFK 70
           ++R++ L   +LF + +    A++  A P ++S ++D                  +    
Sbjct: 1   MKRSL-LFTAMLFAASLTSVQAAQPIADPVFASDIVDRYAEHIFYGSGATGMALVVIDGN 59

Query: 71  Q-------------------DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           Q                   D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSFGDTRPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++   + T  T    
Sbjct: 117 -PPGARVPTYQGTPITLVNL 135


>gi|319939497|ref|ZP_08013857.1| peptidase family S11 [Streptococcus anginosus 1_2_62CV]
 gi|319811483|gb|EFW07778.1| peptidase family S11 [Streptococcus anginosus 1_2_62CV]
          Length = 351

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 34/103 (33%), Gaps = 8/103 (7%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKM---MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           D+   Q+    + +P    S  K+   M   ++ + ++   L +  +  ++ T       
Sbjct: 119 DLTSGQIYAMNETQPMTAGSTYKLPLNM---LVVDEVEKGNLSMTERFDITHTRYEYIGE 175

Query: 117 KLYLKE--KTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
                       +  +     +  S N  + A  E + G +K 
Sbjct: 176 HNNYVAAFNGTMSIPEMQEYSLLYSENTPAYALAERLGGLDKA 218


>gi|227538333|ref|ZP_03968382.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241848|gb|EEI91863.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 416

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 52/154 (33%), Gaps = 29/154 (18%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKL---HLNTQIPVS-----KTAATQNPSKLYLKEKTYFT 127
           YPAS  K+ T  +  E +    +     +T + +      +T    + S     E    +
Sbjct: 80  YPASTVKLPTAILALEKINELNIKGLTKDTPLRIDSAFEKQTRVDHDSSS----ETGLPS 135

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN- 186
             Q +  ++  S ND      EFI   E      ++ K KK G QN+   N   + DK  
Sbjct: 136 VGQYVRKILLTSDNDAQNRLFEFIGREE------LNKKLKKYGTQNSRIVNRLAIGDKGI 189

Query: 187 -----QITTARDQAIL-----GILLRKNFPQYYK 210
                   T  D   +           ++P   K
Sbjct: 190 WAKNTNPVTFYDGDKILYHQEARYDVNDYPMNLK 223


>gi|313207058|ref|YP_004046235.1| beta-lactamase [Riemerella anatipestifer DSM 15868]
 gi|312446374|gb|ADQ82729.1| beta-lactamase [Riemerella anatipestifer DSM 15868]
 gi|315022548|gb|EFT35575.1| penicillin-binding protein 4* [Riemerella anatipestifer RA-YM]
 gi|325335505|gb|ADZ11779.1| beta-lactamase [Riemerella anatipestifer RA-GD]
          Length = 415

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
            Q+ P + AS++K MT   I + +++KK+ L+  I 
Sbjct: 102 NQNTPLHIASISKTMTAMAIMKLIEAKKIKLDQDIT 137


>gi|126149275|dbj|BAF47410.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 294

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 37/119 (31%), Gaps = 5/119 (4%)

Query: 40  IMISMASELHAKPKYSS-----IVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQ 94
             I+ AS+  A  K  +      ++D    +    +QDE     S  K M    +    +
Sbjct: 30  AAITAASDFAALEKACAGRLGVTLLDTASGRRISHRQDERFPMCSTFKSMLAATVLSQAE 89

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                L+ ++PV +     +            T      A I  S N  +      + G
Sbjct: 90  RMPALLDRRVPVGEADLLSHAPVTRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGG 148


>gi|291005123|ref|ZP_06563096.1| lipoprotein [Saccharopolyspora erythraea NRRL 2338]
          Length = 284

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 57/182 (31%), Gaps = 35/182 (19%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEY 92
           I     +    A ++         V+D    +      + E    AS+ K+    I  +Y
Sbjct: 2   IAATPALSAPQAPQVDPGITLGYTVVDARSGETTLQSNEHEQFRSASVVKL---LIALDY 58

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ-GILALITRSANDVSTAFGEFI 151
           L+                         L+       E   +L  + RS+ND + A   ++
Sbjct: 59  LE------------------------GLEPGAEIPAEDEALLQPMLRSSNDAA-ASTFWV 93

Query: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF-PQYYK 210
            G +K     M   A K+ + +T      G+       +A D A     +  +  P+   
Sbjct: 94  RGGQKAIVERM---ADKLDLDDTRPPAKEGM-WGYTALSASDVAKTYRYVLDDTEPEVRD 149

Query: 211 YF 212
           + 
Sbjct: 150 FI 151


>gi|258573097|ref|XP_002540730.1| beta-lactamase [Uncinocarpus reesii 1704]
 gi|237900996|gb|EEP75397.1| beta-lactamase [Uncinocarpus reesii 1704]
          Length = 401

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           K+D+    ASLTK+MT     + ++   + L+  +
Sbjct: 51  KEDDIMAVASLTKLMTSIAALQCVERGLIKLDDDV 85


>gi|332523729|ref|ZP_08399981.1| hypothetical protein STRPO_1401 [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314993|gb|EGJ27978.1| hypothetical protein STRPO_1401 [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 428

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 9/128 (7%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           S+ + K KYS  V  ++     G   D+  Y AS+ K+ TLY +   L + ++ L+  + 
Sbjct: 198 SQKYNKDKYSIYVKQLDSQASAGINADKMMYSASIAKLATLYYVQNQLNTGQIKLDKPLK 257

Query: 106 ----VSKTAATQNPSKLYLKEKT----YFTTEQGILALITRSANDVSTAFGEFISGSEK- 156
               V+       PS     +K      +  +  + A+   S N  +   G +++     
Sbjct: 258 YVNQVNHFDGAYGPSGSGHIDKEADNKEYLVDTLLKAIAQHSDNVATNILGYYVANKYDH 317

Query: 157 KFAILMSN 164
           KF   ++ 
Sbjct: 318 KFYSQINA 325


>gi|150389837|ref|YP_001319886.1| NLP/P60 protein [Alkaliphilus metalliredigens QYMF]
 gi|149949699|gb|ABR48227.1| NLP/P60 protein [Alkaliphilus metalliredigens QYMF]
          Length = 540

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 60  DVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           D+++NQ +           AS+ K++ +   F  ++ KK  LN  + + K     +    
Sbjct: 23  DMSRNQWVIRLNDTHKMPSASIIKLLIMIEAFCQVEEKKFQLNQSLTIPKQDQIPHSMTT 82

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            L+E T F     +  +IT S N  +    + +      F   ++ +A+K+G++ T
Sbjct: 83  DLEENT-FQFVDLVQLMITVSDNTATNVLIDLLG-----F-ENINQRAEKLGLKET 131


>gi|83265503|gb|ABB97519.1| unknown [Clostridium cellulolyticum H10]
          Length = 255

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 56/150 (37%), Gaps = 19/150 (12%)

Query: 59  IDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID+   +M     D  RY A S +K+    ++++Y++  K++++  +   K    +  + 
Sbjct: 24  IDLATGEMVNV-NDTDRYIAASTSKLPINVLLYKYIEEGKVNMDDILTYQKEDF-EPGTG 81

Query: 118 LYLKE--KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           +  +    T +T  +     I +S N         +          +      +G +   
Sbjct: 82  IIQRSAYGTQYTVRETSKLAIRKSDNCGVNMIIRLLD------IQNIRQYLVDLGGKV-- 133

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNF 205
                  +D+   +   D A++   L K++
Sbjct: 134 ------YYDERHRSCPYDMALVAQDLYKHY 157


>gi|315221834|ref|ZP_07863746.1| conserved domain protein [Streptococcus anginosus F0211]
 gi|315189067|gb|EFU22770.1| conserved domain protein [Streptococcus anginosus F0211]
          Length = 337

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 33/100 (33%), Gaps = 2/100 (2%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119
           D+   Q+    + +P    S  K+    ++ + ++   L +  +  ++ T          
Sbjct: 105 DLTSGQIYAMNETQPMTAGSTYKLPLNMLVVDEVEKGNLSMTERFDITHTRYEYIGEHNN 164

Query: 120 LKE--KTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
                    +  +     +  S N  + A  E + G +K 
Sbjct: 165 YVAAFNGTMSIPEMQEYSLLYSENTPAYALAERLGGLDKA 204


>gi|296166656|ref|ZP_06849082.1| LpqF protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295897991|gb|EFG77571.1| LpqF protein [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 448

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 9/102 (8%)

Query: 52  PKYSSIVIDVNKNQ---MTGFKQDEPRYPASLTKMMTLYIIFE---YLQSKKLHLNTQIP 105
            +YS  V  V+  +   + G    E    AS+ K+   Y++      ++      + Q+ 
Sbjct: 161 ARYSYQVAKVDNGRCAPVAGTNTGESLPLASIFKL---YVLHALAGAIRDGTASWDDQLT 217

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           V+  +     S L L      +       +I  S N  +   
Sbjct: 218 VTDKSRAVGSSGLQLPAGAQVSVRTAAEKMIATSDNMATDLL 259


>gi|126471119|dbj|BAF48064.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 294

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 37/119 (31%), Gaps = 5/119 (4%)

Query: 40  IMISMASELHAKPKYSS-----IVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQ 94
             I+ AS+  A  K  +      ++D    +    +QDE     S  K M    +    +
Sbjct: 31  AAITAASDFAALEKACAGRLGVTLLDTASGRRISHRQDERFPMCSTFKSMLAATVLSQAE 90

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                L+ ++PV +     +            T      A I  S N  +      + G
Sbjct: 91  RMPALLDRRVPVGEADLLSHAPVTRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGG 149


>gi|269836702|ref|YP_003318930.1| beta-lactamase [Sphaerobacter thermophilus DSM 20745]
 gi|269785965|gb|ACZ38108.1| beta-lactamase [Sphaerobacter thermophilus DSM 20745]
          Length = 304

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 9/118 (7%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL- 118
           D++      +  D     AS  K + LY ++  + + ++    +I + +       S + 
Sbjct: 29  DLDTGTEVMYNPDVVVPTASTMKTVLLYELYRQVDAGQIDPAMRITLEER-HRVPGSGVL 87

Query: 119 -YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             L      T +     +IT S N  +    + I          ++   +++GM NT 
Sbjct: 88  QDLDAGVAPTVKDVATLMITVSDNTATDMIYDLIGR------EAVATTLERLGMTNTH 139


>gi|37520164|ref|NP_923541.1| beta-lactamase [Gloeobacter violaceus PCC 7421]
 gi|35211157|dbj|BAC88536.1| gll0595 [Gloeobacter violaceus PCC 7421]
          Length = 355

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 4/107 (3%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +  + ++ V   +    K  E    AS+ K+     I + +   +L L  ++ V K +  
Sbjct: 65  RVGAAIVHVESGRAIALKGAERFSMASVYKLPIAIAILDMVDRGELDLTRKLTV-KASDL 123

Query: 113 QNPSKLYLK---EKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           +  S L  +     +  +  + I  ++  S N  S    +   G E 
Sbjct: 124 RPGSPLAERRDAVGSVLSVRELIELVMIYSDNSASDLLFDLAGGGEA 170


>gi|213022278|ref|ZP_03336725.1| beta-lactamase/D-alanine carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 362

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID-------VNKNQ------MTGFK 70
           ++R++ L   +LF + +    A++  A P ++S ++D                  +    
Sbjct: 1   MKRSL-LFTAMLFAASLTSVQAAQPIADPVFASDIVDRYAEHIFYGSGATGMALVVIDGN 59

Query: 71  Q-------------------DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           Q                   D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSFGDTRPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               + +   + T  T    
Sbjct: 117 -PPGAHVPTYQGTPITLVNL 135


>gi|302530794|ref|ZP_07283136.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Streptomyces sp. AA4]
 gi|302439689|gb|EFL11505.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Streptomyces sp. AA4]
          Length = 545

 Score = 47.6 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMT---LYIIFE 91
           +S  +   A  + S  VID     +      + P  PAS TK++T     +  E
Sbjct: 158 LSGPAGAAALSQLSGSVIDPASGTVLWDHASNTPLTPASTTKILTVSAALLAME 211


>gi|322660505|gb|EFY56741.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
          Length = 362

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID-------VNKNQ------MTGFK 70
           ++R++ L   +LF + +    A++  A P ++S ++D                  +    
Sbjct: 1   MKRSL-LFTAMLFAASLTSVQAAQPIADPVFASDIVDRYAEHIFYGSGATGMALVVIDGN 59

Query: 71  Q-------------------DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           Q                   D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSFGDTRPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               + +   + T  T    
Sbjct: 117 -PPGAHVPTYQGTPITLVNL 135


>gi|54887464|emb|CAH10074.1| extended-spectrum beta-lactamase [Escherichia coli]
          Length = 264

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 75/234 (32%), Gaps = 37/234 (15%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN--PSKLYLKEKTYFT--T 128
           E     S+ K+    ++   +   KL LN  + V++ A  QN     +   +   FT   
Sbjct: 38  EKFPMQSVFKLHLAMLVLHQVDQGKLDLNQSVTVNRAAVLQNTWSPMMKDHQGDEFTVAV 97

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK---NASGLHDK 185
           +Q +   ++ S N       E + G +      +    + +G++              D+
Sbjct: 98  QQLLQYSVSHSDNVACDLLFELVGGPQA-----LHAYIQSLGVKEAAVVANEAQMHADDQ 152

Query: 186 NQITTARDQAILGILLRK--------NFPQYYKYFSIRKFRYRNRIITNHNKLL------ 231
            Q            +L+K           Q   +  + +     + +     LL      
Sbjct: 153 VQYQNWTSMKAAAQVLQKFEQKKQLSETSQALLWKWMVETTTGPQRLK---GLLPAGTIV 209

Query: 232 ---NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ-ERDQKAL 281
                   +   KT  T ++G      +     P++  V    +++ ER  +A+
Sbjct: 210 AHKTGTSGVRAGKTAATNDAG----VIMLPDGRPLLVAVFVKDSAESERTNEAI 259


>gi|126149281|dbj|BAF47413.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 256

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 37/119 (31%), Gaps = 5/119 (4%)

Query: 40  IMISMASELHAKPKYSS-----IVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQ 94
             I+ AS+  A  K  +      ++D    +    +QDE     S  K M    +    +
Sbjct: 33  AAITAASDFAALEKACAGRLGVTLLDTASGRRISHRQDERFPMCSTFKSMLAATVLSQAE 92

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                L+ ++PV +     +            T      A I  S N  +      + G
Sbjct: 93  RMPALLDRRVPVGEADLLSHAPVTRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGG 151


>gi|329939447|ref|ZP_08288783.1| peptidoglycan carboxypeptidase [Streptomyces griseoaurantiacus
           M045]
 gi|329301676|gb|EGG45570.1| peptidoglycan carboxypeptidase [Streptomyces griseoaurantiacus
           M045]
          Length = 871

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
           L+ I+  + S+     +  + V+DV+  +    K  D    PAS TK+ T       L
Sbjct: 489 LAGILDPLLSDPSLGDRRGAAVVDVSTGRRLYAKDADAGLTPASTTKIATAVAALSAL 546



 Score = 42.5 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 68/181 (37%), Gaps = 34/181 (18%)

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILA-----LITRSANDVSTAFGEFIS---GSEKKF-- 158
            AA +  ++   + +T  + +   L+     ++T S ND++ A     +   G E  F  
Sbjct: 674 KAAEKGSARATGRARTLASVQSPPLSAVVERMLTNSDNDIAEALARHTALATGGEGSFEG 733

Query: 159 -AILMSNKAKKIGMQ--NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-- 213
            A  +  + KK+G+      + + SGL  ++++T     ++L +    + P+     +  
Sbjct: 734 GAAAVGAQVKKLGLPVGGAEFHDGSGLDRRDKLTARLLTSLLALAGSADHPELRTVLTGL 793

Query: 214 -IRKFRYRNRIITNHNKLLNKMHNID-----GI---KTGYTRNSGFNIVTSLRYKDDPIV 264
            I  F            L ++    D     G+   KTG        +  ++      ++
Sbjct: 794 PIAGFTGT---------LSDRYEGTDTHAGTGLVRAKTGSLTGVN-TLAGTVVTAGGRLL 843

Query: 265 A 265
           A
Sbjct: 844 A 844


>gi|134096832|ref|YP_001102493.1| lipoprotein [Saccharopolyspora erythraea NRRL 2338]
 gi|133909455|emb|CAL99567.1| possible lipoprotein [Saccharopolyspora erythraea NRRL 2338]
          Length = 302

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 66/201 (32%), Gaps = 44/201 (21%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSI---------VIDVNKNQ-MTGFKQDE 73
           + R  + +  +   +  ++  A+   + P+   +         V+D    +      + E
Sbjct: 1   MNRTKRAVTGLAAATASLVIAATPALSAPQAPQVDPGITLGYTVVDARSGETTLQSNEHE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ-GI 132
               AS+ K+    I  +YL+                         L+       E   +
Sbjct: 61  QFRSASVVKL---LIALDYLE------------------------GLEPGAEIPAEDEAL 93

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
           L  + RS+ND + A   ++ G +K     M   A K+ + +T      G+       +A 
Sbjct: 94  LQPMLRSSNDAA-ASTFWVRGGQKAIVERM---ADKLDLDDTRPPAKEGM-WGYTALSAS 148

Query: 193 DQAILGILLRKNF-PQYYKYF 212
           D A     +  +  P+   + 
Sbjct: 149 DVAKTYRYVLDDTEPEVRDFI 169


>gi|257438157|ref|ZP_05613912.1| putative beta-lactamase [Faecalibacterium prausnitzii A2-165]
 gi|257199488|gb|EEU97772.1| putative beta-lactamase [Faecalibacterium prausnitzii A2-165]
          Length = 283

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 11/164 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           +A+EL++     S+ +D  +        DE    AS  K   L +++      +  L  +
Sbjct: 11  IAAELYSYQGRMSVFVDDLRGSTVEIGADEEFETASTIKAFILAVLYLQASRGRADLEEE 70

Query: 104 IPVSKTAATQNPSKL--YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
           I   + +   + S +   L        +     +I  S N  +    +++          
Sbjct: 71  ITY-EASQFVDGSGMLRALGVGAKLKVKDTATMMIICSDNIATNMIIDYLG------LDT 123

Query: 162 MSNKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILGILLRK 203
           ++   +++G  +T+  N       DK   TT RD A L   + K
Sbjct: 124 INACIRELGFGHTVLHNPLHFDRYDKLGTTTPRDYAALFAQVAK 167


>gi|326204823|ref|ZP_08194677.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           papyrosolvens DSM 2782]
 gi|325985035|gb|EGD45877.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
           papyrosolvens DSM 2782]
          Length = 353

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 55/149 (36%), Gaps = 17/149 (11%)

Query: 59  IDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           ID+   +M   +  +    AS +K+    ++++ ++S K+ L+  +   K    +  + +
Sbjct: 129 IDLATGEMVNVRDTDRYIAASTSKLPINVLLYKNIESGKVKLDDMLTYQKEDV-EPGTGI 187

Query: 119 YLKE--KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
             K    T +T  +     +T+S N         +          +      +G +    
Sbjct: 188 IQKSAFGTQYTVRETSKLAVTKSDNCGVNMIIRLLD------IQNVRQYLVDLGGKV--- 238

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNF 205
                 +D +  +   D A++   L K++
Sbjct: 239 -----YYDNHHRSCPYDMALVAQDLYKHY 262


>gi|213621670|ref|ZP_03374453.1| beta-lactamase/D-alanine carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 280

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID-------VNKNQ------MTGFK 70
           ++R++ L   +LF + +    A++  A P ++S ++D                  +    
Sbjct: 1   MKRSL-LFTAMLFAASLTSVQAAQPIADPVFASDIVDRYAEHIFYGSGATGMALVVIDGN 59

Query: 71  Q-------------------DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           Q                   D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSFGDTRPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               + +   + T  T    
Sbjct: 117 -PPGAHVPTYQGTPITLVNL 135


>gi|114331058|ref|YP_747280.1| Beta-lactamase [Nitrosomonas eutropha C91]
 gi|114308072|gb|ABI59315.1| Beta-lactamase [Nitrosomonas eutropha C91]
          Length = 319

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 54/165 (32%), Gaps = 17/165 (10%)

Query: 21  SIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSS------------IVIDVNKNQMTG 68
           S    R   L+  +  L+ + +  A+    +P   +              +D    ++  
Sbjct: 29  SPLCTRREFLIAVVSALAAMPVLSAASTEGEPASIADIEAKVGGRVGVFAVDTGSGKVLA 88

Query: 69  FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPSKLYLKEKTYF 126
            + DE     S  K +    I   ++   L L++ +   +    A    + ++ KE  + 
Sbjct: 89  HRPDERFAMCSTFKWVLAATILAQVEQNLLSLSSHVLYGQADLLAYAPVTSMHAKEG-FM 147

Query: 127 TTEQGILALITRSANDVSTAFGEFISGS--EKKFAILMSNKAKKI 169
           T  +   A I  S N  +      + G     +F     +   ++
Sbjct: 148 TVSELTRAAIVVSDNTAANLLLSKLGGPSVVTEFVRSCGDAVTRL 192


>gi|325697130|gb|EGD39017.1| peptidase family S11 [Streptococcus sanguinis SK160]
          Length = 359

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 60/171 (35%), Gaps = 6/171 (3%)

Query: 2   LQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVI-D 60
           L+   +S  +K  +    G       ++     L L+ ++ +  +E+  +P   +    D
Sbjct: 67  LKPVEKSPEEKQKVMEADGPTMDALGLRFDYANLDLTQVIQAYMTEMGIEPSQVAFSYKD 126

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-LY 119
           +   +       +P    S  K+    ++ + + + KL ++ +  ++ T          Y
Sbjct: 127 LTTGKTFAMNDTQPMTAGSTYKLPLNMLVVDEVAAGKLSMDERFDITNTNYEYRGEHDNY 186

Query: 120 LKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKK---FAILMSNKA 166
           +                +  S N  + A  E + G EK    F+    +KA
Sbjct: 187 VGAFNGAMRISDMQEYSLVYSENTPAYALAERLGGMEKAYDMFSRYGQSKA 237


>gi|269795424|ref|YP_003314879.1| penicillin-binding protein [Sanguibacter keddieii DSM 10542]
 gi|269097609|gb|ACZ22045.1| penicillin-binding protein, beta-lactamase class C [Sanguibacter
           keddieii DSM 10542]
          Length = 271

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 50/152 (32%), Gaps = 10/152 (6%)

Query: 56  SIVIDVNKNQMTGFKQD-EPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++V   +  ++     D +  +P AS++K++T Y     ++   + L+            
Sbjct: 18  AVV--ASSGEVLASHGDLDRVFPLASVSKLLTAYAALVAVEEGAVGLDDPAGPDGATVRH 75

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKK-IGM 171
             +     + +  T           S N       E I+  S   FA          + M
Sbjct: 76  LLAHTAGYDFSERTVRAAPGERRIYS-NVGFEVLAETIAERSGIDFASYAHEAVLVPLAM 134

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRK 203
            +T   + SG       +T  D A     L++
Sbjct: 135 TST---DVSGSPAAGASSTVADLARFAAELQQ 163


>gi|315502163|ref|YP_004081050.1| beta-lactamase [Micromonospora sp. L5]
 gi|315408782|gb|ADU06899.1| beta-lactamase [Micromonospora sp. L5]
          Length = 293

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 42/127 (33%), Gaps = 16/127 (12%)

Query: 58  VIDVN---KNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQS---KKLHLNTQIPVSKTAA 111
           V+DV+     ++   + DE    AS+ K+M   ++ E+ +     +L    ++ V     
Sbjct: 22  VVDVDDPAGGEV-ALRADEQIVIASIFKIM---VVLEFARQAAAGQLDPTERVLVGAADR 77

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                     +    +        ++ S N  +      I       A ++   A ++ +
Sbjct: 78  LGGWGVAGCADDVEVSLRDLAYLAMSVSDNTAADLLLRRIG------ADVLPMLAAELDL 131

Query: 172 QNTIYKN 178
             T    
Sbjct: 132 PRTRIVG 138


>gi|329116770|ref|ZP_08245487.1| hypothetical protein SPB_2043 [Streptococcus parauberis NCFD 2020]
 gi|326907175|gb|EGE54089.1| hypothetical protein SPB_2043 [Streptococcus parauberis NCFD 2020]
          Length = 428

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 8/117 (6%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           M SE + K  YS  V  +N     G   D+  Y AS+ K+ TLY + E + + +L L+++
Sbjct: 196 MLSEKYNKDNYSVFVKQINTQASAGINADKQMYAASIAKLGTLYFVQERVNNGQLRLDSK 255

Query: 104 IP----VSKTAATQNPSKLYL----KEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
                 V+      +PS         +   ++ +  +  +   S N  +   G + +
Sbjct: 256 FKYVDQVNHFNGDYDPSGSGQISKKADNKEYSVDNLLQGVSQHSDNVATNILGYYGA 312


>gi|325924216|ref|ZP_08185775.1| beta-lactamase class A [Xanthomonas gardneri ATCC 19865]
 gi|325545297|gb|EGD16592.1| beta-lactamase class A [Xanthomonas gardneri ATCC 19865]
          Length = 301

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 6/93 (6%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ++D    +  G ++DE     S  K +    + + +   KL L  ++ +    A+   S 
Sbjct: 59  LLDSATGKHFGQREDERFPMCSTFKFVLAAAVLQRVDQGKLTLAQRVKIR---ASDMLSH 115

Query: 118 LYLKE---KTYFTTEQGILALITRSANDVSTAF 147
             + E       +  +   A +  S N  +   
Sbjct: 116 APVTERHVGGSLSVAELCRATMIYSDNPAANLL 148


>gi|308233850|ref|ZP_07664587.1| beta-lactamase [Atopobium vaginae DSM 15829]
 gi|328943558|ref|ZP_08241023.1| hypothetical protein HMPREF0091_10248 [Atopobium vaginae DSM 15829]
 gi|327491527|gb|EGF23301.1| hypothetical protein HMPREF0091_10248 [Atopobium vaginae DSM 15829]
          Length = 382

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 51/149 (34%), Gaps = 12/149 (8%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYII--FEYLQSKKLHLNTQIPVSKTA 110
             S  +ID +         D+    AS+ K+    +      + + +L    ++ +    
Sbjct: 147 SVSVCIIDASNGNYCHVNSDKAFVSASMIKL--AVLCEYMHAVDNGQLDPADRVTLKNMK 204

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                  +  +    ++ ++    +I  S N  +      +          ++ + + +G
Sbjct: 205 VVGGTGLIQTERHASYSYDELCRYMIMYSDNTATNVLINKLGQ------DAINERVQALG 258

Query: 171 MQNTIY-KNASGLH-DKNQITTARDQAIL 197
            +NT   +    L+ +     +ARD A +
Sbjct: 259 CKNTSLNRQLMALNTNTENWISARDAATI 287


>gi|326626721|gb|EGE33064.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 385

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID-------VNKNQ------MTGFK 70
           ++R++ L   +LF + +    A++  A P ++S ++D                  +    
Sbjct: 1   MKRSL-LFTAMLFAASLTSVQAAQPIADPVFASDIVDRYAEHIFYGSGATGMALVVIDGN 59

Query: 71  Q-------------------DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           Q                   D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSFGDTRPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               + +   + T  T    
Sbjct: 117 -PPGAHVPTYQGTPITLVNL 135


>gi|221633333|ref|YP_002522558.1| beta-lactamase [Thermomicrobium roseum DSM 5159]
 gi|221155952|gb|ACM05079.1| beta-lactamase [Thermomicrobium roseum DSM 5159]
          Length = 269

 Score = 47.2 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 12/133 (9%)

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAATQNPSKLYLKEKTY 125
             +  D P   AS  K++ L  ++     ++L    ++ + S      +    +L E   
Sbjct: 29  IAYDADRPVVAASTIKLLVLARLYRAFAREQLDPRARVRIASDQVVPGSGVLRWLAEPPP 88

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA-SGLHD 184
            T     + +   S N  + A  + +      FA +      ++G+  T  +    G   
Sbjct: 89  MTLRDLAVLMTIVSDNVAANALIDVLG-----FAAME-ELVVELGLTGTALRRPFWGRAA 142

Query: 185 ----KNQITTARD 193
                  + TARD
Sbjct: 143 YPGEPENLVTARD 155


>gi|94968635|ref|YP_590683.1| Beta-lactamase [Candidatus Koribacter versatilis Ellin345]
 gi|94550685|gb|ABF40609.1| Beta-lactamase [Candidatus Koribacter versatilis Ellin345]
          Length = 291

 Score = 47.2 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 6/125 (4%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           FL+  + + A   + K   S+ V+D   +Q   F  ++     S+ K+         +Q 
Sbjct: 19  FLTKTVKTAAHPANGKVGVSAKVLD--SSQTISFHGNKNFPMQSVYKLPIAIFTLRRVQE 76

Query: 96  KKLHLNTQIPVSKT----AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            K+ L+  + V +     AA  +P +        FT E  +   I  S    S    + I
Sbjct: 77  GKIKLDQVVKVDEDDLIPAAGNSPLRDKHPRGGEFTIEDLLRRAIVDSDGSASDVLLKQI 136

Query: 152 SGSEK 156
            G+ +
Sbjct: 137 GGTRE 141


>gi|56414469|ref|YP_151544.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363390|ref|YP_002143027.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56128726|gb|AAV78232.1| penicillin-binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094867|emb|CAR60401.1| penicillin-binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 385

 Score = 47.2 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID-------VNKNQ------MTGFK 70
           ++R++ L   +LF + +    A++  A P ++S ++D                  +    
Sbjct: 1   MKRSL-LFTAMLFAASLTSVQAAQPIADPVFASDIVDRYAEHIFYGSGATGMALVVIDGN 59

Query: 71  Q-------------------DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           Q                   D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSFGDTRPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               + +   + T  T    
Sbjct: 117 -PPGAHVPTYQGTPITLVNL 135


>gi|194443461|ref|YP_002039614.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194402124|gb|ACF62346.1| beta-lactamase [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 385

 Score = 47.2 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID-------VNKNQ------MTGFK 70
           ++R++ L   +LF + +    A++  A P ++S ++D                  +    
Sbjct: 1   MKRSL-LFTAMLFAASLTSVQAAQPIADPVFASDIVDRYAEHIFYGSGATGMALVVIDGN 59

Query: 71  Q-------------------DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           Q                   D     AS+TK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSFGDTRPGNNVRPQLDSVIRIASITKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               + +   + T  T    
Sbjct: 117 -PPGAHVPTYQGTPITLVNL 135


>gi|198245095|ref|YP_002214327.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197939611|gb|ACH76944.1| beta-lactamase [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|322614656|gb|EFY11585.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620175|gb|EFY17047.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623469|gb|EFY20308.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629233|gb|EFY26012.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631953|gb|EFY28707.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637309|gb|EFY34011.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641995|gb|EFY38605.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646242|gb|EFY42756.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322652491|gb|EFY48845.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653346|gb|EFY49679.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322664657|gb|EFY60850.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669290|gb|EFY65440.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670836|gb|EFY66969.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678926|gb|EFY74981.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681954|gb|EFY77979.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685217|gb|EFY81214.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194435|gb|EFZ79630.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197029|gb|EFZ82171.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203354|gb|EFZ88379.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206901|gb|EFZ91854.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210329|gb|EFZ95221.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214571|gb|EFZ99322.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323223128|gb|EGA07471.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323223968|gb|EGA08262.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230105|gb|EGA14225.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233843|gb|EGA17932.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238463|gb|EGA22521.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244151|gb|EGA28160.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246311|gb|EGA30294.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251937|gb|EGA35800.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257934|gb|EGA41613.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261053|gb|EGA44645.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265017|gb|EGA48516.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272580|gb|EGA55987.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326622075|gb|EGE28420.1| beta-lactamase [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 385

 Score = 47.2 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID-------VNKNQ------MTGFK 70
           ++R++ L   +LF + +    A++  A P ++S ++D                  +    
Sbjct: 1   MKRSL-LFTAMLFAASLTSVQAAQPIADPVFASDIVDRYAEHIFYGSGATGMALVVIDGN 59

Query: 71  Q-------------------DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           Q                   D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSFGDTRPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               + +   + T  T    
Sbjct: 117 -PPGAHVPTYQGTPITLVNL 135


>gi|126663980|ref|ZP_01734974.1| penicillin-binding protein 4* [Flavobacteria bacterium BAL38]
 gi|126623929|gb|EAZ94623.1| penicillin-binding protein 4* [Flavobacteria bacterium BAL38]
          Length = 393

 Score = 47.2 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 24/85 (28%)

Query: 61  VNKNQMTGF--------------KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
               ++                 KQ+ P + AS++K++T   I + + +KKL L+  +  
Sbjct: 78  AKNGEILYENYSGYAYKEKGDSIKQNTPLHIASVSKVITAVTILKLVDAKKLKLDDLVT- 136

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQG 131
                    S L        T    
Sbjct: 137 ---------SILPEFPHEKTTVRML 152


>gi|116073106|ref|ZP_01470368.1| putative beta-lactamase [Synechococcus sp. RS9916]
 gi|116068411|gb|EAU74163.1| putative beta-lactamase [Synechococcus sp. RS9916]
          Length = 377

 Score = 47.2 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 55/154 (35%), Gaps = 14/154 (9%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMT--LYIIFEYLQSKKLHLNTQ 103
           +   A  K S+ ++ ++  +      D     AS  K  T  L    E L +  LH N  
Sbjct: 108 AAQQADLKVSAFMLVLDDGRYAELGADTALPAASSIK--TPILLAALERLDAGDLHWNEP 165

Query: 104 IPVSKTAATQNPSKLYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           + ++K         +  K   T F T +    +I  S N  +    E   G +      +
Sbjct: 166 LTMTKPLVGGGAGWMANKPVGTRFPTYEVATEMIRISDNTATNLMIERAGGKQA-----V 220

Query: 163 SNKAKKIGMQNTIYKNASGLHD--KNQITTARDQ 194
           + +   +G+  T   N   L D      T+ARD 
Sbjct: 221 NIRFNTLGLSATKINNW--LPDLKGTNTTSARDL 252


>gi|226314164|ref|YP_002774060.1| hypothetical protein BBR47_45790 [Brevibacillus brevis NBRC 100599]
 gi|226097114|dbj|BAH45556.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 269

 Score = 47.2 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 45/143 (31%), Gaps = 18/143 (12%)

Query: 68  GFKQDEPRYPA-SLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL--YLKE 122
                +  + A S+ K  +M    +F   +     L+ Q+ + +       S +   L  
Sbjct: 33  FEHVPDELFIAESVIKVPIMAA--VFAASEQGHFRLDDQLVLRQEDL-VGGSGILYALSP 89

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA--- 179
               T    +  +I +S N  +    + +          +      +GM  + Y      
Sbjct: 90  GLRLTIRDLVTLMIIQSDNTATNMLIDLVGK------DQIDQTMIDLGMHQSCYSRKLMI 143

Query: 180 SGLH-DKNQITTARDQAILGILL 201
             L   +N   TA D A +   L
Sbjct: 144 YPLDITENNKITAGDVASMLGHL 166


>gi|221229331|gb|ABO61019.2| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 303

 Score = 47.2 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 37/119 (31%), Gaps = 5/119 (4%)

Query: 40  IMISMASELHAKPKYSS-----IVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQ 94
             I+ AS+  A  K  +      ++D    +  G +QDE     S  K M         +
Sbjct: 39  AAITAASDFAALEKACAGRLGVTLLDTASGRRIGHRQDERFPMCSTFKSMLAATTLSQAE 98

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                L+ ++PV +     +            T      A I  S N  +      + G
Sbjct: 99  RMPALLDRRVPVGEADLLSHAPVTRRHAGVDMTVRDLCRATIITSGNTAANLLFGVVGG 157


>gi|322385870|ref|ZP_08059513.1| peptidase family S11 [Streptococcus cristatus ATCC 51100]
 gi|321270155|gb|EFX53072.1| peptidase family S11 [Streptococcus cristatus ATCC 51100]
          Length = 350

 Score = 47.2 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 2/100 (2%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--K 117
           D+   Q       +P    S  K+    ++ + + + KL L  +  ++ T+         
Sbjct: 118 DLTSGQTYAMNDTQPMTAGSTYKLPLNMLVVDEVAAGKLSLEERFDITNTSYEYKGEHDN 177

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
                    +        +  S N  + A  E + G +K 
Sbjct: 178 YVAAFNGAMSIPDMQEYSLVYSENTPAYALAERLGGMDKA 217


>gi|197335045|ref|YP_002155230.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Vibrio fischeri MJ11]
 gi|197316535|gb|ACH65982.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Vibrio fischeri MJ11]
          Length = 468

 Score = 47.2 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 9/88 (10%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID-VNKNQMTGF-KQDEPRYPAS 79
            + + ++  +  I F SI  I            ++I ++ +  N++    KQDE   PAS
Sbjct: 2   FFFRYSLIALSLISFSSIADIKETLSSLPSGSRAAITVENLQSNKIEFQQKQDELLPPAS 61

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVS 107
             K++T  +        +L L T+   +
Sbjct: 62  TLKIVTALVA-------RLALGTEFTFT 82


>gi|16759353|ref|NP_454970.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29142875|ref|NP_806217.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213425184|ref|ZP_03357934.1| beta-lactamase/D-alanine carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213647654|ref|ZP_03377707.1| beta-lactamase/D-alanine carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|289828463|ref|ZP_06546321.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25290217|pir||AF0548 penicillin-binding protein AmpH [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16501644|emb|CAD08830.1| penicillin-binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138507|gb|AAO70077.1| penicillin-binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 385

 Score = 47.2 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID-------VNKNQ------MTGFK 70
           ++R++ L   +LF + +    A++  A P ++S ++D                  +    
Sbjct: 1   MKRSL-LFTAMLFAASLTSVQAAQPIADPVFASDIVDRYAEHIFYGSGATGMALVVIDGN 59

Query: 71  Q-------------------DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           Q                   D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSFGDTRPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               + +   + T  T    
Sbjct: 117 -PPGAHVPTYQGTPITLVNL 135


>gi|224582211|ref|YP_002636009.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224466738|gb|ACN44568.1| penicillin-binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 385

 Score = 47.2 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID-------VNKNQ------MTGFK 70
           ++R++ L   +LF + +    A++  A P ++S ++D                  +    
Sbjct: 1   MKRSL-LFTAMLFAASLTSVQAAQPIADPVFASDIVDRYAEHIFYGSGATGMALVVIDGN 59

Query: 71  Q-------------------DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           Q                   D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSFGDTRPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               + +   + T  T    
Sbjct: 117 -PPGAHVPTYQGTPITLVNL 135


>gi|168261203|ref|ZP_02683176.1| beta-lactamase [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|238911492|ref|ZP_04655329.1| beta-lactamase/D-alanine carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|205349924|gb|EDZ36555.1| beta-lactamase [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
          Length = 385

 Score = 47.2 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID-------VNKNQ------MTGFK 70
           ++R++ L   +LF + +    A++  A P ++S ++D                  +    
Sbjct: 1   MKRSL-LFTAMLFAASLTSVQAAQPIADPVFASDIVDRYAEHIFYGSGATGMALVVIDGN 59

Query: 71  Q-------------------DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           Q                   D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSFGDTRPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               + +   + T  T    
Sbjct: 117 -PPGAHVPTYQGTPITLVNL 135


>gi|168232338|ref|ZP_02657396.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168465454|ref|ZP_02699336.1| beta-lactamase [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|168819026|ref|ZP_02831026.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194469004|ref|ZP_03074988.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|197251539|ref|YP_002145355.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|194455368|gb|EDX44207.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|195631965|gb|EDX50485.1| beta-lactamase [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197215242|gb|ACH52639.1| beta-lactamase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|205333383|gb|EDZ20147.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205344160|gb|EDZ30924.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
          Length = 385

 Score = 47.2 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID-------VNKNQ------MTGFK 70
           ++R++ L   +LF + +    A++  A P ++S ++D                  +    
Sbjct: 1   MKRSL-LFTAMLFAASLTSVQAAQPIADPVFASDIVDRYAEHIFYGSGATGMALVVIDGN 59

Query: 71  Q-------------------DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           Q                   D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSFGDTRPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               + +   + T  T    
Sbjct: 117 -PPGAHVPTYQGTPITLVNL 135


>gi|168237479|ref|ZP_02662537.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194734112|ref|YP_002113404.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197263583|ref|ZP_03163657.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|204927213|ref|ZP_03218415.1| beta-lactamase [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|194709614|gb|ACF88835.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197241838|gb|EDY24458.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197289513|gb|EDY28876.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204323878|gb|EDZ09073.1| beta-lactamase [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 385

 Score = 47.2 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID-------VNKNQ------MTGFK 70
           ++R++ L   +LF + +    A++  A P ++S ++D                  +    
Sbjct: 1   MKRSL-LFTAMLFAASLTSVQAAQPIADPVFASDIVDRYAEHIFYGSGATGMALVVIDGN 59

Query: 71  Q-------------------DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           Q                   D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSFGDTRPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               + +   + T  T    
Sbjct: 117 -PPGAHVPTYQGTPITLVNL 135


>gi|213854620|ref|ZP_03382860.1| beta-lactamase/D-alanine carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 385

 Score = 47.2 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID-------VNKNQ------MTGFK 70
           ++R++ L   +LF + +    A++  A P ++S ++D                  +    
Sbjct: 1   MKRSL-LFTAMLFAASLTSVQAAQPIADPVFASDIVDRYAEHIFYGSGATGMALVVIDGN 59

Query: 71  Q-------------------DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           Q                   D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSFGDTRPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               + +   + T  T    
Sbjct: 117 -PPGAHVPTYQGTPITLVNL 135


>gi|309799281|ref|ZP_07693529.1| beta-lactamase [Streptococcus infantis SK1302]
 gi|308117126|gb|EFO54554.1| beta-lactamase [Streptococcus infantis SK1302]
          Length = 353

 Score = 47.2 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 9/111 (8%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
           ++  +  G  +D+  Y AS+ K+  LY + E +      L+T++           S    
Sbjct: 238 LSTGKEAGINEDQKMYSASVMKLPYLYYVQEKINQGDYQLDTKLKYVSEVNDSPGSYKPE 297

Query: 121 KEKTY--------FTTEQGILALITRSANDVSTAFGEFISG-SEKKFAILM 162
              +         +T +  I      S N        +I+  S++ F    
Sbjct: 298 GSGSLPKTADNKDYTLKDLITKTAKESDNVAHNILAYYITNKSDEAFKKRN 348


>gi|116623556|ref|YP_825712.1| beta-lactamase [Candidatus Solibacter usitatus Ellin6076]
 gi|116226718|gb|ABJ85427.1| beta-lactamase [Candidatus Solibacter usitatus Ellin6076]
          Length = 303

 Score = 47.2 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 50/158 (31%), Gaps = 18/158 (11%)

Query: 29  QLMGKILFLSIIMISMASELHA--------KPKYSSIVIDVNKNQMTGFKQDEPRYPASL 80
            ++  + F S  + +      A        +   S    +++     G ++  P   AS 
Sbjct: 3   TMVSLVFFFSAALPAQQPLQDAVRERIGNFQGTVSLYAKNLDTGASVGIREALPVRTAST 62

Query: 81  TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY--LKEKTYFTTEQGILALITR 138
            K+  L  + + + + K      + V           +   L +         +  +I  
Sbjct: 63  IKLPILLAVTDQVAAGKAKWTEMLTVRPQDKVSGSGVIGAELSDGVQLPLRDVVHLMIVL 122

Query: 139 SANDVSTAFGEFISGSEKKF-AILMSNKAKKIGMQNTI 175
           S N  +           ++F A  ++    KIG++ T 
Sbjct: 123 SDNSATNMI-------LERFTADAVNAYLDKIGIKTTR 153


>gi|291007334|ref|ZP_06565307.1| beta-lactamase class A-like protein [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 272

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 6/101 (5%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
            +PAS  K++ +      +Q   L L+T++               L           I  
Sbjct: 57  VHPASTIKVLVMLTALREVQRGGLALDTEVRFPDERVGGAGVLKDLPGLRCLELADAITL 116

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           +I+ S N  + A  E +      F   +   A ++G + T 
Sbjct: 117 MISISDNTATNAVIEAVG-----F-EAVGELAAELGCEGTQ 151


>gi|134100412|ref|YP_001106073.1| beta-lactamase class A-like protein [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133913035|emb|CAM03148.1| beta-lactamase class A-like protein [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 252

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 6/101 (5%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
            +PAS  K++ +      +Q   L L+T++               L           I  
Sbjct: 37  VHPASTIKVLVMLTALREVQRGGLALDTEVRFPDERVGGAGVLKDLPGLRCLELADAITL 96

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           +I+ S N  + A  E +      F   +   A ++G + T 
Sbjct: 97  MISISDNTATNAVIEAVG-----F-EAVGELAAELGCEGTQ 131


>gi|324993343|gb|EGC25263.1| peptidase family S11 [Streptococcus sanguinis SK405]
 gi|327461616|gb|EGF07947.1| peptidase family S11 [Streptococcus sanguinis SK1]
 gi|327473336|gb|EGF18756.1| peptidase family S11 [Streptococcus sanguinis SK408]
 gi|327489474|gb|EGF21267.1| peptidase family S11 [Streptococcus sanguinis SK1058]
          Length = 386

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 39/112 (34%), Gaps = 5/112 (4%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-L 118
           D+   +       +P    S  K+    ++ + + + KL ++ +  ++ T          
Sbjct: 153 DLTTGKTFAMNDTQPMTAGSTYKLPLNMLVVDEVAAGKLSMDERFDITNTNYEYRGEHDN 212

Query: 119 YLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKK---FAILMSNKA 166
           Y+       +        +  S N  + A  E + G EK    F+    +KA
Sbjct: 213 YVGAFNGAMSISDMQEYSLVYSENTPAYALAERLGGMEKAYDMFSRYGQSKA 264


>gi|284040035|ref|YP_003389965.1| beta-lactamase [Spirosoma linguale DSM 74]
 gi|283819328|gb|ADB41166.1| beta-lactamase [Spirosoma linguale DSM 74]
          Length = 323

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 74/210 (35%), Gaps = 48/210 (22%)

Query: 26  RNIQLMGKILFLSIIMISMAS---------------ELHAKPKYSSIVI-DVNKNQMTGF 69
           R I L   + F+S + + +A+               EL   P   ++   D+   +    
Sbjct: 26  RIIFLTIGLAFVSALWLPVAAQSRPTLAKLRQQIEQELSRHPGTFAVAFKDLKTGKELLI 85

Query: 70  KQDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPV-------------SKTAATQN 114
           ++ E  + AS  K  +M    +++     KL L+  + +             S  A   +
Sbjct: 86  REHEVFHAASTMKTPVM--IEVYKQAAQHKLALSDSMTITTDFKSIVDGSSYSLHAEQDS 143

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
            + +Y    T  T    +  +I  S+N  +    E +       A  ++   + +G ++ 
Sbjct: 144 DTSIYKAVGTKRTLAALVYDMIIVSSNLATNMVIERVG------AQNVTQTMRDLGAKDI 197

Query: 175 IYKNASGLHDK-------NQITTARDQAIL 197
             +   G+ D        N  TTA D  ++
Sbjct: 198 QVRR--GVEDSKAFAQGLNNTTTAYDLMVI 225


>gi|291085784|ref|ZP_06354051.2| beta-lactamase [Citrobacter youngae ATCC 29220]
 gi|291069840|gb|EFE07949.1| beta-lactamase [Citrobacter youngae ATCC 29220]
          Length = 407

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 35/139 (25%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIV--------------------IDVNK 63
           ++R++     +   S+  +  A  +      S IV                    ID N+
Sbjct: 23  LKRSLLFSAALCAASLTSVQAAQPITDPVFASDIVDRYADHIFYGSGATGMALVVIDGNQ 82

Query: 64  ------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
                  +           D     AS+TK+MT  ++ + L    + LN   P+SK A  
Sbjct: 83  RVFRSFGETRPGNNVHPQLDSVIRIASITKLMTSEVLVKLLDQGTVKLND--PLSKYA-- 138

Query: 113 QNPSKLYLKEKTYFTTEQG 131
              +++   + T  T    
Sbjct: 139 PPGARVPTYQGTPITLVNL 157


>gi|168705626|ref|ZP_02737903.1| beta-lactamase [Gemmata obscuriglobus UQM 2246]
          Length = 296

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 58/164 (35%), Gaps = 23/164 (14%)

Query: 26  RNIQLMGKILFLSIIMISMASELHA---------KPKYSSIVIDVNKNQMTGFKQDEPRY 76
           R ++ +  +    +   + A++L +         K K +  V  +   +      DEP  
Sbjct: 5   RTVRYLALVCLGLLPPHASAADLESRITPLVKEHKGKVAVAVKHLKTGEEFYLNADEPMP 64

Query: 77  PASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL---YLKEKTYFTTEQG 131
            ASL K  +M     +   +  K+  +  + ++K       S +   +  E   F  +  
Sbjct: 65  TASLIKLPIMVE--AYWQAKEDKIKFDKPVTLAKGD-KVPGSGILTPHFSEGAAFPLKDA 121

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           I  +I  S N  +    + I             +  ++G++NT 
Sbjct: 122 IRLMIVYSDNTATNMVIDQIG------LPATGERMAQLGLKNTK 159


>gi|269838056|ref|YP_003320284.1| beta-lactamase [Sphaerobacter thermophilus DSM 20745]
 gi|269787319|gb|ACZ39462.1| beta-lactamase [Sphaerobacter thermophilus DSM 20745]
          Length = 272

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 14/147 (9%)

Query: 64  NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL--YLK 121
            +      D     AS  K+  +  ++  + + +  L  +I V + A     S +  +L 
Sbjct: 34  GETFRHNGDRRFRAASTVKIPLMIAVYRAVDAGERALTDRI-VLRAADKAPGSGVLLHLH 92

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS- 180
           +    T E  +   I+ S N  +    + +          +++    +GM+++       
Sbjct: 93  DGLELTLEDLVYLTISISDNTATNLLIDLVG------LDAVNDVIASLGMRDSNLSRKMK 146

Query: 181 ---GLHD-KNQITTARDQAILGILLRK 203
               L D      T  D A+    L +
Sbjct: 147 GRPALPDEPENWATPDDYALAVQALLE 173


>gi|227540925|ref|ZP_03970974.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227183185|gb|EEI64157.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 414

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 15/124 (12%)

Query: 43  SMASELHAKPKYSS------IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQS 95
           + A EL A  +  +      IV DV   +    K  D P  PAS+TK++T       L +
Sbjct: 60  AQAPELEALSQDPALGEFFGIVTDVQTGETVWEKNADVPGRPASITKVLTATAAVHALPA 119

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
               L T++     A   +    Y+K           L  +              +    
Sbjct: 120 GH-RLVTEV----YA---DGDTSYIKAGGDVWLSDASLDRLAGMVTTPRVVLDTSVWDGF 171

Query: 156 KKFA 159
           + FA
Sbjct: 172 EPFA 175


>gi|5001722|gb|AAD37116.1|AF123246_1 chromosomic class A beta-lactamase [Stenotrophomonas maltophilia]
          Length = 304

 Score = 46.8 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 3/96 (3%)

Query: 61  VNKN---QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           +N     ++ G +QDE     S  K M +  +     + ++ L+T++P+++         
Sbjct: 63  LNTGNGRRIGGHRQDERFPMCSTFKSMLVAHVLSLADAGRVSLDTRVPIAEKDLLSYAPV 122

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                    T        +T S N  +    E + G
Sbjct: 123 ARRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGG 158


>gi|319654718|ref|ZP_08008797.1| hypothetical protein HMPREF1013_05419 [Bacillus sp. 2_A_57_CT2]
 gi|317393634|gb|EFV74393.1| hypothetical protein HMPREF1013_05419 [Bacillus sp. 2_A_57_CT2]
          Length = 261

 Score = 46.8 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 50/147 (34%), Gaps = 16/147 (10%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYII-FEYLQSKKLHLNTQIPVSKTAATQNPSKL--YLKE 122
           +     D+    ASL K+  + +      ++  L LN +  V K AA    + +   + +
Sbjct: 31  VIETNADDVISSASLIKV-PILLAGLSQAENALLDLNEEAEV-KDAARVGGAGVLQAMSK 88

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT----IYKN 178
                    +  ++  S N  +    E +          ++   K +G   T       +
Sbjct: 89  GLKMKVIDLMTLMVIVSDNTATNLIIERLG------IEKINQFIKSLGFNCTELNRKMMD 142

Query: 179 ASGLHDK-NQITTARDQAILGILLRKN 204
              L +  +  TTARD       L +N
Sbjct: 143 FEALKNGMDNTTTARDMVYGMKALAEN 169


>gi|240172186|ref|ZP_04750845.1| lipoprotein lpqF [Mycobacterium kansasii ATCC 12478]
          Length = 388

 Score = 46.8 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 6/78 (7%)

Query: 73  EPRYPASLTKMMTLYII---FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE 129
           E    AS+ K+   Y++    + ++   +  +  + V+  +     S L L    + +  
Sbjct: 125 ESLPLASIFKL---YVLHALADAVKDGTVSWDEMLTVTAKSKAVGSSGLELPPGAHVSVR 181

Query: 130 QGILALITRSANDVSTAF 147
                +I  S N  +   
Sbjct: 182 TAAEKMIATSDNMATDLL 199


>gi|74474868|dbj|BAE44422.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
 gi|74474876|dbj|BAE44426.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
 gi|74474878|dbj|BAE44427.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 290

 Score = 46.8 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 3/96 (3%)

Query: 61  VNKN---QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           +N     ++ G +QDE     S  K M +  +     + ++ L+T++P+++         
Sbjct: 52  LNTGNGRRIGGHRQDERFPMCSTFKSMLVAHVLSLADAGRVSLDTRVPIAEKDLLSYAPV 111

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                    T        +T S N  +    E + G
Sbjct: 112 ARRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGG 147


>gi|327479473|gb|AEA82783.1| beta-lactamase [Pseudomonas stutzeri DSM 4166]
          Length = 359

 Score = 46.8 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 3/92 (3%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP--VSKTAATQNP 115
           V D+       +  ++  Y AS  K+     +   ++   L L++ +    S       P
Sbjct: 58  VKDMQTGISVSYHGEDAWYLASTVKVPIAIAVMRRVEQDDLTLDSPVTLLASDYVDGAGP 117

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           +  +       +    +  ++  S N  S   
Sbjct: 118 TNSHA-PGKALSVRYLLDQMLIHSDNTASDML 148


>gi|74474870|dbj|BAE44423.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 290

 Score = 46.8 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 3/96 (3%)

Query: 61  VNKN---QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           +N     ++ G +QDE     S  K M +  +     + ++ L+T++P+++         
Sbjct: 52  LNTGNGRRIGGHRQDERFPMCSTFKSMLVAHVLSLADAGRVSLDTRVPIAEKDLLSYAPV 111

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                    T        +T S N  +    E + G
Sbjct: 112 ARRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGG 147


>gi|221229325|gb|ABO61016.2| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 304

 Score = 46.8 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 3/96 (3%)

Query: 61  VNKN---QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           +N     ++ G +QDE     S  K M +  +     + ++ L+T++P+++         
Sbjct: 63  LNTGNGRRIGGHRQDERFPMCSTFKSMLVAHVLSLADAGRVSLDTRVPIAEKDLLSYAPV 122

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                    T        +T S N  +    E + G
Sbjct: 123 ARRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGG 158


>gi|325929380|ref|ZP_08190510.1| beta-lactamase class A [Xanthomonas perforans 91-118]
 gi|325540292|gb|EGD11904.1| beta-lactamase class A [Xanthomonas perforans 91-118]
          Length = 266

 Score = 46.8 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ++D    +  G ++DE     S  K +    +   +   KL L  Q+ +   A+      
Sbjct: 24  LLDSATGKRLGQREDERFPMCSTFKFVLAAAVLRRVDQGKLTLAQQVRI--HASDM-LEH 80

Query: 118 LYLKE---KTYFTTEQGILALITRSANDVSTAF 147
             + E       +  +   A +  S N  +   
Sbjct: 81  APVTERHVGGSLSVGELCRATMIYSDNPAANLL 113


>gi|221229319|gb|ABO61013.2| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 304

 Score = 46.8 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 3/96 (3%)

Query: 61  VNKN---QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           +N     ++ G +QDE     S  K M +  +     + ++ L+T++P+++         
Sbjct: 63  LNTGNGRRIGGHRQDERFPMCSTFKSMLVAHVLSLADAGRVSLDTRVPIAEKDLLSYAPV 122

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                    T        +T S N  +    E + G
Sbjct: 123 ARRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGG 158


>gi|325694052|gb|EGD35970.1| peptidase family S11 [Streptococcus sanguinis SK150]
          Length = 386

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 5/112 (4%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-L 118
           D+   +       +P    S  K+    ++ + + + KL ++ +  ++ T          
Sbjct: 153 DLTTGKTFAMNDTQPMTAGSTYKLPLNMLVVDEVAAGKLSMDERFDITNTNYEYRGEHDN 212

Query: 119 YLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKK---FAILMSNKA 166
           Y+                +  S N  + A  E + G EK    F+    +KA
Sbjct: 213 YVGAFNGAMRISDMQEYSLVYSENTPAYALAERLGGMEKAYDMFSRYGQSKA 264


>gi|213863075|ref|ZP_03386330.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 39

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 226 NHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLR 257
           N N LL     N+DGIKTG+T  +G+N+V S  
Sbjct: 5   NRNGLLWDNSLNVDGIKTGHTDKAGYNLVASAT 37


>gi|166713005|ref|ZP_02244212.1| beta lactamase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 313

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 29/90 (32%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           + D       G ++DE     S  K +    + + +   KL L  ++ +  +   ++   
Sbjct: 55  LFDSATGWRLGQREDERFPMCSTFKFVLAAAVLQRVDQGKLTLTQRVKIRASDMLEHAPV 114

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAF 147
                    +  +   A +  S N  +   
Sbjct: 115 TERHVGGSLSVGELCRATMIYSDNPAANVL 144


>gi|15828034|ref|NP_302297.1| probale hypothetical protein [Mycobacterium leprae TN]
 gi|221230511|ref|YP_002503927.1| probale secreted protein [Mycobacterium leprae Br4923]
 gi|13093587|emb|CAC30878.1| probale secreted protein [Mycobacterium leprae]
 gi|219933618|emb|CAR72020.1| probale secreted protein [Mycobacterium leprae Br4923]
          Length = 454

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 9/102 (8%)

Query: 52  PKYSSIVIDVNKNQ---MTGFKQDEPRYPASLTKMMTLYIIFE---YLQSKKLHLNTQIP 105
            +YS  V  V+  +   + G    E    AS+ K+   Y++      +++  +  + Q+ 
Sbjct: 167 ARYSYQVAKVDNGRCDPVQGTNTAESLPLASIFKL---YVLHALAYAVRNGTVSWDDQLT 223

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           V+  +     S L L    + +       +I  S N  +   
Sbjct: 224 VTDKSRAVGSSGLELPIGEHVSVRTAAEKMIATSDNMATDLL 265


>gi|54023728|ref|YP_117970.1| putative penicillin-binding protein [Nocardia farcinica IFM 10152]
 gi|54015236|dbj|BAD56606.1| putative penicillin-binding protein [Nocardia farcinica IFM 10152]
          Length = 629

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 34/146 (23%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPA-----------------------SLT 81
           A EL      S++V+D    Q+     D    PA                       S+ 
Sbjct: 277 ARELSGAEGASAVVLDAKTGQVLAMANDNTFNPALGPQSWGSANTNNPSVSDPFEPGSVN 336

Query: 82  KMMTLYIIFEYLQSKKLHLNT--QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
           K++T     EY      + +   Q+P S   A    S  +  +   +TT      +  +S
Sbjct: 337 KIVTAAAAIEY---GLTNPDEVHQVPGSIRMAGVTVSDAWGHDVAPYTT----TGIFGKS 389

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNK 165
           +N  +    + I   E +FA ++   
Sbjct: 390 SNVGTLMLAQRIG--EDRFADMLHRF 413


>gi|221229334|gb|ABO61021.2| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 304

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 3/96 (3%)

Query: 61  VNKN---QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           +N     ++ G +QDE     S  K M +  +     + ++ L+T++P+++         
Sbjct: 63  LNTGNGRRIGGHRQDERFPMCSTFKSMLVAHVLSLADAGRVSLDTRVPIAEKDLLSYAPV 122

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                    T        +T S N  +    E + G
Sbjct: 123 ARRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGG 158


>gi|84622918|ref|YP_450290.1| beta lactamase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84366858|dbj|BAE68016.1| beta lactamase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 313

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 31/90 (34%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ++D       G ++DE     S  K +    + + +   KL L  ++ +  +   ++   
Sbjct: 55  LLDSATGWRLGQREDERFPMCSTFKFVLAAAVLQRVDQGKLTLAQRVKIRASDMLEHAPV 114

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAF 147
                    +  +   A +  S N  + A 
Sbjct: 115 TERHVGGSLSVGELCRATMIYSDNPAANAL 144


>gi|323191482|gb|EFZ76744.1| penicillin-binding protein ampH [Escherichia coli RN587/1]
          Length = 385

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 52/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L   +L  + +    A++   +P+++S                     +VID N
Sbjct: 1   MKRSL-LFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  I+ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSYGETRPGNNVRPQLDSVIRIASLTKLMTSEILVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++     T  T    
Sbjct: 117 -PPGARVPTYNGTPITLVNL 135


>gi|21243888|ref|NP_643470.1| beta lactamase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21109491|gb|AAM38006.1| beta lactamase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 297

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ++D    +  G ++ E     S  K +    + + +   KL L  Q+ +   A+      
Sbjct: 55  LLDSATGKRLGQREHERFPMCSTFKFVLAAAVLQQVDQGKLTLAQQVEI--HASDM-LEH 111

Query: 118 LYLKE---KTYFTTEQGILALITRSANDVSTAF 147
             + E       +  +   A +  S N  +   
Sbjct: 112 APVTERHVGGSLSVGELCRATMIYSDNPAANLL 144


>gi|324995346|gb|EGC27258.1| peptidase family S11 [Streptococcus sanguinis SK678]
          Length = 386

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 5/112 (4%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-L 118
           D+   +       +P    S  K+    ++ + + + KL ++ +  ++ T          
Sbjct: 153 DLTTGKTFAMNDTQPMTAGSTYKLPLNMLVVDEVAAGKLSMDERFDITNTNYEYRGEHDN 212

Query: 119 YLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKK---FAILMSNKA 166
           Y+                +  S N  + A  E + G EK    F+    +KA
Sbjct: 213 YVGAFNGAMRISDMQEYSLVYSENTPAYALAERLGGMEKAYDMFSRYGQSKA 264


>gi|329118533|ref|ZP_08247237.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327465268|gb|EGF11549.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 469

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 51  KPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
             + +  V D+   ++      D P  PAS  K++T Y     L        T+    K+
Sbjct: 27  PDEVAFFVQDLRSGKVLAEHRADVPLNPASTMKLVTAYAALRAL-GGDFRWQTEF---KS 82

Query: 110 AATQNPSKL 118
           AA    S L
Sbjct: 83  AAPLRGSLL 91


>gi|325690135|gb|EGD32139.1| peptidase family S11 [Streptococcus sanguinis SK115]
          Length = 386

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 5/112 (4%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-L 118
           D+   +       +P    S  K+    ++ + + + KL ++ +  ++ T          
Sbjct: 153 DLTTGKTFAMNDTQPMTAGSTYKLPLNMLVVDEVAAGKLSMDERFDITNTNYEYRGEHDN 212

Query: 119 YLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKK---FAILMSNKA 166
           Y+                +  S N  + A  E + G EK    F+    +KA
Sbjct: 213 YVGAFNGAMRISDMQEYSLVYSENTPAYALAERLGGMEKAYDMFSRYGQSKA 264


>gi|325688282|gb|EGD30301.1| peptidase family S11 [Streptococcus sanguinis SK72]
          Length = 386

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 5/112 (4%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-L 118
           D+   +       +P    S  K+    ++ + + + KL ++ +  ++ T          
Sbjct: 153 DLTTGKTFAMNDTQPMTAGSTYKLPLNMLVVDEVAAGKLSMDERFDITNTNYEYRGEHDN 212

Query: 119 YLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKK---FAILMSNKA 166
           Y+                +  S N  + A  E + G EK    F+    +KA
Sbjct: 213 YVGAFNGAMRISDMQEYSLVYSENTPAYALAERLGGMEKAYDMFSRYGQSKA 264


>gi|297519358|ref|ZP_06937744.1| beta-lactam binding protein AmpH [Escherichia coli OP50]
          Length = 330

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L   +L  + +    A++   +P+++S                     +VID N
Sbjct: 1   MKRSL-LFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++     T  T    
Sbjct: 117 -PPGARVPTYNGTPITLVNL 135


>gi|296271401|ref|YP_003654033.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
           anine-endopeptidase [Thermobispora bispora DSM 43833]
 gi|296094188|gb|ADG90140.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
           anine-endopeptidase [Thermobispora bispora DSM 43833]
          Length = 451

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIF 90
           L+  + S+       P  + IV+D     +    +  +P  PAS TK++T   + 
Sbjct: 61  LAAKLTSVMGTPGLGPSVAGIVMDARTGAVLFDGRSGKPMTPASTTKVVTAAAVL 115


>gi|262281633|ref|ZP_06059402.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
 gi|262262087|gb|EEY80784.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
          Length = 426

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 8/99 (8%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT------AATQN 114
           +N  +  G  QD   Y AS+TK+  LY   E L   K  L   +   +       A    
Sbjct: 211 LNTGKTAGINQDTEMYSASVTKLPILYYAQEELNKGKFTLAQGLKYIQDVNDYSGAYDTE 270

Query: 115 PSKLYLKEKT--YFTTEQGILALITRSANDVSTAFGEFI 151
            S    KE     ++ +  I  +   S N  +   G ++
Sbjct: 271 GSGSLPKEADNKEYSVQDLINHIAKESDNAATNILGYYV 309


>gi|332363479|gb|EGJ41262.1| peptidase family S11 [Streptococcus sanguinis SK355]
          Length = 386

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 5/112 (4%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-L 118
           D+   +       +P    S  K+    ++ + + + KL ++ +  ++ T          
Sbjct: 153 DLTTGKTFAMNDTQPMTAGSTYKLPLNMLVVDEVAAGKLSMDERFDITNTNYEYRGEHDN 212

Query: 119 YLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKK---FAILMSNKA 166
           Y+                +  S N  + A  E + G EK    F+    +KA
Sbjct: 213 YVGAFNGAMRISDMQEYSLVYSENTPAYALAERLGGMEKAYDMFSRYGQSKA 264


>gi|327254688|gb|EGE66304.1| penicillin-binding protein ampH [Escherichia coli STEC_7v]
          Length = 376

 Score = 46.4 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D     ASLTK+MT  ++ + L    + LN   P+SK A     +++     T  T    
Sbjct: 71  DSVVRIASLTKLMTSELLVKLLDQGTVKLND--PLSKYA--PPGARVPTYNGTPITLVNL 126


>gi|328945518|gb|EGG39669.1| peptidase family S11 [Streptococcus sanguinis SK1087]
          Length = 386

 Score = 46.4 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 5/112 (4%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-L 118
           D+   +       +P    S  K+    ++ + + + KL ++ +  ++ T          
Sbjct: 153 DLTTGKTFAMNDTQPMTAGSTYKLPLNMLVVDEVAAGKLSMDERFDITNTNYEYRGEHDN 212

Query: 119 YLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKK---FAILMSNKA 166
           Y+                +  S N  + A  E + G EK    F+    +KA
Sbjct: 213 YVGAFNGAMRISDMQEYSLVYSENTPAYALAERLGGMEKAYDMFSRYGQSKA 264


>gi|323352676|ref|ZP_08087646.1| peptidase family S11 [Streptococcus sanguinis VMC66]
 gi|322121712|gb|EFX93458.1| peptidase family S11 [Streptococcus sanguinis VMC66]
 gi|327458702|gb|EGF05050.1| peptidase family S11 [Streptococcus sanguinis SK1057]
 gi|332361701|gb|EGJ39505.1| peptidase family S11 [Streptococcus sanguinis SK1056]
          Length = 386

 Score = 46.4 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 5/112 (4%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-L 118
           D+   +       +P    S  K+    ++ + + + KL ++ +  ++ T          
Sbjct: 153 DLTTGKTFAMNDTQPMTAGSTYKLPLNMLVVDEVAAGKLSMDERFDITNTNYEYRGEHDN 212

Query: 119 YLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKK---FAILMSNKA 166
           Y+                +  S N  + A  E + G EK    F+    +KA
Sbjct: 213 YVGAFNGAMRISDMQEYSLVYSENTPAYALAERLGGMEKAYDMFSRYGQSKA 264


>gi|254823226|ref|ZP_05228227.1| LpqF [Mycobacterium intracellulare ATCC 13950]
          Length = 454

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFE---YLQSKKLHLNTQIPVSKTAATQNPSKLYLKE 122
           + G    E    AS+ K+   Y++      +++  +  + Q+ V+  +     S L L  
Sbjct: 184 VAGTNARESLPLASIFKL---YVLHALAGAIKNGTVSWDDQLTVTDKSRAVGSSGLALPA 240

Query: 123 KTYFTTEQGILALITRSANDVSTAF 147
             + +  +    +I  S N  +   
Sbjct: 241 GAHVSVRKAAEKMIATSDNMATDLL 265


>gi|169627656|ref|YP_001701305.1| lipoprotein LpqF [Mycobacterium abscessus ATCC 19977]
 gi|169239623|emb|CAM60651.1| Probable conserved lipoprotein LpqF [Mycobacterium abscessus]
          Length = 446

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEY---LQSKKLHLNTQIPVSKTAATQN 114
           ++D    Q+ G    +    AS+ K+   Y++      + +  L  + Q+ V+       
Sbjct: 169 IVDGQCQQIAGTNTSQAMPLASVFKL---YVLLAAGTAINAGTLRWDDQLTVTDRGKALG 225

Query: 115 PSKLYLKEKTYFTTEQGILALITRSAN 141
            S   L   +  +       +I+ S N
Sbjct: 226 SSMDKLPTGSTVSVRTAAQKMISVSDN 252


>gi|220928175|ref|YP_002505084.1| beta-lactamase class A-like protein [Clostridium cellulolyticum
           H10]
 gi|219998503|gb|ACL75104.1| Beta-lactamase class A-like protein [Clostridium cellulolyticum
           H10]
          Length = 370

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 56/150 (37%), Gaps = 19/150 (12%)

Query: 59  IDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID+   +M     D  RY A S +K+    ++++Y++  K++++  +   K    +  + 
Sbjct: 139 IDLATGEMVNV-NDTDRYIAASTSKLPINVLLYKYIEEGKVNMDDILTYQKEDF-EPGTG 196

Query: 118 LYLKE--KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           +  +    T +T  +     I +S N         +          +      +G +   
Sbjct: 197 IIQRSAYGTQYTVRETSKLAIRKSDNCGVNMIIRLLD------IQNIRQYLVDLGGKV-- 248

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNF 205
                  +D+   +   D A++   L K++
Sbjct: 249 ------YYDERHRSCPYDMALVAQDLYKHY 272


>gi|302865616|ref|YP_003834253.1| beta-lactamase [Micromonospora aurantiaca ATCC 27029]
 gi|302568475|gb|ADL44677.1| beta-lactamase [Micromonospora aurantiaca ATCC 27029]
          Length = 293

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 42/127 (33%), Gaps = 16/127 (12%)

Query: 58  VIDVN---KNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQS---KKLHLNTQIPVSKTAA 111
           V+DV+     ++   + DE    AS+ K+M   ++ E+ +     +L    ++ V     
Sbjct: 22  VVDVDDPAGGEV-ALRADEQIVIASVFKIM---VVLEFARQAAAGQLDPTERVLVGAADR 77

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                     +    +        ++ S N  +      I       A ++   A ++ +
Sbjct: 78  LGGWGVAGCADDVEVSLRDLAYLAMSVSDNTAADLLLRRIG------ADVLPMLAAELDL 131

Query: 172 QNTIYKN 178
             T    
Sbjct: 132 PRTRIVG 138


>gi|229494579|ref|ZP_04388342.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
 gi|229318941|gb|EEN84799.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
          Length = 468

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 17/109 (15%)

Query: 65  QMTGFKQDE--------PRYPASLTKMMTLYI---IFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++T  K  E        P+   S  K+   Y+   +   +Q+  L  + ++ ++    + 
Sbjct: 183 EVTEGKNAEVFSVGDTSPQPTGSTIKL---YVLGAVATAVQNGTLSWDQKLTITDDLKSM 239

Query: 114 NPSKL-YLKEKTYFTTEQGILALITRSANDVSTAF--GEFISGSEKKFA 159
               +  L   T  T       +I+ S N  +            E +FA
Sbjct: 240 PGGTMQDLPSGTEVTVRDTAGKMISISDNTATDMLIAAVGREQVEAEFA 288


>gi|226357104|ref|YP_002786844.1| beta-lactamase [Deinococcus deserti VCD115]
 gi|226319094|gb|ACO47090.1| putative beta-lactamase (penicillinase) [Deinococcus deserti
           VCD115]
          Length = 280

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 52/154 (33%), Gaps = 19/154 (12%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119
           D++  ++           AS  K+  L    +  Q+ +L+L  ++ + + A     S + 
Sbjct: 24  DLDGTELYALNATRTFPAASTIKVPLLIQALQEAQTGRLNLRERVTL-EAADRVPGSGIL 82

Query: 120 --LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
             L      +    +  ++  S N  +      +   E      +++   + G  +T   
Sbjct: 83  YELGAGLQPSWLDLLTLMVIVSDNTATNLVIARLGPDE------INSWLARGGWSSTRLI 136

Query: 178 NASGLHDKNQ----------ITTARDQAILGILL 201
               L  + Q           T+A DQ  L + L
Sbjct: 137 GRLQLPPEQQNEAQRRGERNRTSAHDQVDLLLRL 170


>gi|226304663|ref|YP_002764621.1| hypothetical protein RER_11740 [Rhodococcus erythropolis PR4]
 gi|226183778|dbj|BAH31882.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 468

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 17/109 (15%)

Query: 65  QMTGFKQDE--------PRYPASLTKMMTLYI---IFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++TG K  E        P+   S  K+   Y+   +   +Q+  L  + ++ ++    + 
Sbjct: 183 EVTGGKNAEVFGVGDTSPQPTGSTIKL---YVLGAVATAVQNGTLSWDQKLTITDDLKSM 239

Query: 114 NPSKL-YLKEKTYFTTEQGILALITRSANDVSTAF--GEFISGSEKKFA 159
               +  L   T  T  +    +I+ S N  +            E +FA
Sbjct: 240 PGGTMQDLPSGTEVTVRETAGKMISISDNTATDMLIAAVGREQVEAEFA 288


>gi|78048849|ref|YP_365024.1| beta-lactamase precursor [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78037279|emb|CAJ25024.1| beta-lactamase precursor [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 297

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 30/90 (33%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ++D    +  G ++DE     S  K +    +   +   KL L  Q+ +  +   ++   
Sbjct: 55  LLDSATGKRLGQREDERFPMCSTFKFVLAAAVLRRVDQGKLTLAQQVRIRASDMLEHAPV 114

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAF 147
                    +  +   A +  S N  +   
Sbjct: 115 TERHVGGSLSVGELCRATMIYSDNPAANLL 144


>gi|237741379|ref|ZP_04571860.1| beta-lactamase [Fusobacterium sp. 4_1_13]
 gi|229430911|gb|EEO41123.1| beta-lactamase [Fusobacterium sp. 4_1_13]
          Length = 261

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 57/155 (36%), Gaps = 20/155 (12%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYII--FEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           D+NKN       D+    AS+ K++   +    + +   K  L+  + +           
Sbjct: 28  DLNKNNGFSVNGDKKVLSASMIKLL--ILAELMKKIFENKFSLSDTVMM-ANFMKIGGDG 84

Query: 118 LY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           +   L    +FT ++    +I  S N  +    +F+          ++   K++ ++ T 
Sbjct: 85  VLKELNTGHHFTLKELATLMIIVSDNQATNILIDFLG------MENINQLGKELDLKET- 137

Query: 176 YKNASGLHDK------NQITTARDQAILGILLRKN 204
           +     +  +      +  T A D ++L  L+ + 
Sbjct: 138 FLGRKMMDAEARKKGYDNYTCADDISLLLKLIYQE 172


>gi|41406564|ref|NP_959400.1| LpqF [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41394913|gb|AAS02783.1| LpqF [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 429

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 6/85 (7%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFE---YLQSKKLHLNTQIPVSKTAATQNPSKLYLKE 122
           + G    E    AS+ K+   Y++      + + ++  + Q+ V+  +     S L L  
Sbjct: 159 VAGTNTGEALPLASIFKL---YVLHALAGAVTAGRVSWDDQLTVTDKSRAVGSSGLALPA 215

Query: 123 KTYFTTEQGILALITRSANDVSTAF 147
               +       +I  S N  +   
Sbjct: 216 GAQVSVRTAAEKMIATSDNMATDLL 240


>gi|295395567|ref|ZP_06805761.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971586|gb|EFG47467.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 521

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYL 93
            +         +S+ V D         K     R PAS+TK++T     + L
Sbjct: 135 PIFDSAKDPSAFSAEVRDAKTGDTLYDKDANRARTPASVTKVLTATAALDAL 186


>gi|294784138|ref|ZP_06749439.1| beta-lactamase [Fusobacterium sp. 3_1_27]
 gi|294488208|gb|EFG35553.1| beta-lactamase [Fusobacterium sp. 3_1_27]
          Length = 261

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYII--FEYLQSKKLHLNTQIPVSK-TAATQNPS 116
           D+NKN       D+    AS+ K++   +    + +   K  L+  + ++       +  
Sbjct: 28  DLNKNNGFSVNGDKKVLSASMIKLL--ILAELMKKIFENKFSLSDTVMMANFMKIEGDGV 85

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
              L    +FT ++    +I  S N  +    +F+          ++   K++ ++ T +
Sbjct: 86  LKELNTGHHFTLKELATLMIIVSDNQATNILIDFLG------MENINQLGKELDLKET-F 138

Query: 177 KNASGLHDK------NQITTARDQAILGILLRKN 204
                +  +      +  T A D ++L  L+ + 
Sbjct: 139 LGRKMMDAEARKKGYDNYTCADDISLLLKLIYQE 172


>gi|284038213|ref|YP_003388143.1| beta-lactamase [Spirosoma linguale DSM 74]
 gi|283817506|gb|ADB39344.1| Beta-lactamase [Spirosoma linguale DSM 74]
          Length = 349

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 3/113 (2%)

Query: 47  ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
              AK K     + +   +       E    AS  K+     +F  ++  KL L T + +
Sbjct: 48  AAIAKAKVGICALHLESGKQVSLNLQERFPMASTVKVAIAVQLFTLIEQGKLSLMTMVDL 107

Query: 107 ---SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
                   +     L+ K     + +  +  ++  S N  +      + G+E 
Sbjct: 108 QPSDLHPGSGTLEVLFAKPGVQLSVQNLLELMMVISDNSATDILLRLVGGTEA 160


>gi|308177249|ref|YP_003916655.1| hypothetical protein AARI_14650 [Arthrobacter arilaitensis Re117]
 gi|307744712|emb|CBT75684.1| conserved hypothetical protein [Arthrobacter arilaitensis Re117]
          Length = 270

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 67/175 (38%), Gaps = 27/175 (15%)

Query: 42  ISMASELHAKPKYSSI--VIDVNKNQMTGFKQDEPR-YP-ASLTKMMTLYIIFEYLQSKK 97
           +S+ +++   P   ++  V+DV   Q+     D    +P AS+TK+++ Y     L+ + 
Sbjct: 1   MSVLTQIDQWPSGHAVSVVVDV-SGQIIDQHGDTQHAFPLASVTKLLSAYAFLVALEEEA 59

Query: 98  LHLNTQIPVSKTAATQNPSKLY----LKEKTYFTTEQGILALITRS--ANDVSTAFGEFI 151
           + L+         A    S ++          F +E    A+ T+   +N       E +
Sbjct: 60  ISLDEP-------AGPEGSTVHHLLAHTAGYDFDSETIRFAVGTKRGYSNTGFDKLAEHL 112

Query: 152 ----SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
                 S  ++A         +GM NT+     G   K+  +TA D A     L 
Sbjct: 113 EAQTGISLPEYAQE--AVFAPLGMNNTVIA---GSCAKDGRSTAADLAKFAAELL 162


>gi|62178986|ref|YP_215403.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62126619|gb|AAX64322.1| penicillin- binding protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322713443|gb|EFZ05014.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 385

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID-------VNKNQ------MTGFK 70
           ++R++ L   +LF + +    A++  A P ++S ++D                  +    
Sbjct: 1   MKRSL-LFTAMLFAASLTSVQAAQPIADPVFASDIVDRYAEHIFYGSGATGMALVVIDGN 59

Query: 71  Q-------------------DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           Q                   D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSFGDTRPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGMVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               + +   + T  T    
Sbjct: 117 -PPGAHVPTYQGTPITLVNL 135


>gi|324990605|gb|EGC22541.1| peptidase family S11 [Streptococcus sanguinis SK353]
          Length = 359

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 5/112 (4%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-L 118
           D+   +       +P    S  K+    ++ + + + KL ++ +  ++ T          
Sbjct: 126 DLTTGKTFAMNDTQPMTAGSTYKLPLNMLVVDEVAAGKLSMDERFDITNTNYEYRGEHDN 185

Query: 119 YLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKK---FAILMSNKA 166
           Y+                +  S N  + A  E + G EK    F+    +KA
Sbjct: 186 YVGAFNGAMRISDMQEYSLVYSENTPAYALAERLGGMEKAYDMFSRYGQSKA 237


>gi|311895544|dbj|BAJ27952.1| putative cell division protein FtsI [Kitasatospora setae KM-6054]
          Length = 718

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 60/162 (37%), Gaps = 33/162 (20%)

Query: 48  LHAKPKYSSIVI-DVNKNQMTG--------------FKQD--------EPRYPASLTKMM 84
            +A  +   +++ DV   Q+                 + D        +   P S  K+M
Sbjct: 373 ANAGAEKGYVIVQDVRTGQVLAMATSPGFDPNDLASARADQLGNAALQDAYEPGSTAKLM 432

Query: 85  TLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
           T+  + +   + K + +T + V  T    +  +++  +  + T    +  ++ +S+N  +
Sbjct: 433 TMAAVLD---TGKANWDTHVEVPNTLQRAD--RVFHDDIDHETWYLTLAGVLAKSSNIGT 487

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
               E +  ++ +   ++++   + G+        SGL    
Sbjct: 488 IEAAEHLGATQAESNKVLADYLDRFGIGK-----PSGLGFPG 524


>gi|297563881|ref|YP_003682854.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296848330|gb|ADH70348.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 455

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 55  SSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYL 93
           S  V+D    +       D P  PAS TK+ T   + + +
Sbjct: 82  SGFVVDAATGETLFELDPDAPVTPASTTKIATAVAVLDAV 121


>gi|309700638|emb|CBI99934.1| penicillin-binding protein [Escherichia coli ETEC H10407]
          Length = 385

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L   +L  + +    A++   +P+++S                     +VID N
Sbjct: 1   MKRSL-LFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++     T  T    
Sbjct: 117 -PPGARVPTYNGTPITLVNL 135


>gi|332362765|gb|EGJ40561.1| peptidase family S11 [Streptococcus sanguinis SK49]
          Length = 359

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 5/112 (4%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-L 118
           D+   +       +P    S  K+    ++ + + + KL ++ +  ++ T          
Sbjct: 126 DLTTGKTFAMNDTQPMTAGSTYKLPLNMLVVDEVAAGKLSMDERFDITNTNYEYRGEHDN 185

Query: 119 YLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKK---FAILMSNKA 166
           Y+                +  S N  + A  E + G EK    F+    +KA
Sbjct: 186 YVGAFNGAMRISDMQEYSLVYSENTPAYALAERLGGMEKAYDMFSRYGQSKA 237


>gi|332094520|gb|EGI99566.1| penicillin-binding protein ampH [Shigella boydii 5216-82]
          Length = 383

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L   +L  + +    A++   +P+++S                     +VID N
Sbjct: 1   MKRSL-LFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++     T  T    
Sbjct: 117 -PPGARVPTYNGTPITLVNL 135


>gi|327468966|gb|EGF14438.1| peptidase family S11 [Streptococcus sanguinis SK330]
          Length = 386

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 5/112 (4%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-L 118
           D+   +       +P    S  K+    ++ + + + KL ++ +  ++ T          
Sbjct: 153 DLTTGKTFAINDTQPMTAGSTYKLPLNMLVVDEVAAGKLSMDERFDITNTNYEYRGEHDN 212

Query: 119 YLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKK---FAILMSNKA 166
           Y+                +  S N  + A  E + G EK    F+    +KA
Sbjct: 213 YVGAFNGAMRISDMQEYSLVYSENTPAYALAERLGGMEKAYDMFSRYGQSKA 264


>gi|312866190|ref|ZP_07726411.1| conserved hypothetical protein [Streptococcus downei F0415]
 gi|311098594|gb|EFQ56817.1| conserved hypothetical protein [Streptococcus downei F0415]
          Length = 348

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 34/95 (35%), Gaps = 13/95 (13%)

Query: 79  SL--TKMMTL---------YIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-LYL-KEKTY 125
           S+  T++MT           ++ + ++  K + + ++ ++      +     Y+      
Sbjct: 121 SMNDTQLMTAGSTYKLPLNMLVVDGVEEGKFNYDQKVDITNLDYEYSGEHDAYVTNYGGS 180

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
            T  Q     +  S N  +      + G EK ++ 
Sbjct: 181 MTIPQMQYGSLVVSENTPAYGLASLLGGMEKAYSQ 215


>gi|260853598|ref|YP_003227489.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli O26:H11
           str. 11368]
 gi|260866537|ref|YP_003232939.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli O111:H-
           str. 11128]
 gi|257752247|dbj|BAI23749.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli O26:H11
           str. 11368]
 gi|257762893|dbj|BAI34388.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli O111:H-
           str. 11128]
 gi|323152158|gb|EFZ38451.1| penicillin-binding protein ampH [Escherichia coli EPECa14]
 gi|323178365|gb|EFZ63943.1| penicillin-binding protein ampH [Escherichia coli 1180]
          Length = 385

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L   +L  + +    A++   +P+++S                     +VID N
Sbjct: 1   MKRSL-LFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++     T  T    
Sbjct: 117 -PPGARVPTYNGTPITLVNL 135


>gi|194438848|ref|ZP_03070933.1| penicillin-binding protein AmpH [Escherichia coli 101-1]
 gi|253774643|ref|YP_003037474.1| beta-lactam binding protein AmpH [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160442|ref|YP_003043550.1| beta-lactam binding protein AmpH [Escherichia coli B str. REL606]
 gi|312970467|ref|ZP_07784648.1| penicillin-binding protein ampH [Escherichia coli 1827-70]
 gi|194422142|gb|EDX38144.1| penicillin-binding protein AmpH [Escherichia coli 101-1]
 gi|242376154|emb|CAQ30844.1| penicillin-binding protein [Escherichia coli BL21(DE3)]
 gi|253325687|gb|ACT30289.1| beta-lactamase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972343|gb|ACT38014.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli B str.
           REL606]
 gi|253976552|gb|ACT42222.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli
           BL21(DE3)]
 gi|310337116|gb|EFQ02254.1| penicillin-binding protein ampH [Escherichia coli 1827-70]
 gi|323938559|gb|EGB34808.1| beta-lactamase [Escherichia coli E1520]
 gi|323963360|gb|EGB58922.1| beta-lactamase [Escherichia coli H489]
 gi|323972223|gb|EGB67433.1| beta-lactamase [Escherichia coli TA007]
 gi|332341736|gb|AEE55070.1| penicillin-binding protein AmpH [Escherichia coli UMNK88]
          Length = 385

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L   +L  + +    A++   +P+++S                     +VID N
Sbjct: 1   MKRSL-LFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++     T  T    
Sbjct: 117 -PPGARVPTYNGTPITLVNL 135


>gi|313889519|ref|ZP_07823165.1| conserved hypothetical protein [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313122131|gb|EFR45224.1| conserved hypothetical protein [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 428

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 9/128 (7%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           S+ + K KYS  V  ++     G   D+  Y AS+ K+ TLY +   L + ++  +  + 
Sbjct: 198 SQKYNKDKYSIYVKQLDSQASAGINADKMMYSASIAKLATLYYVQNQLNTGQIKPDKPLR 257

Query: 106 ----VSKTAATQNPSKLYLKEKT----YFTTEQGILALITRSANDVSTAFGEFISGSEK- 156
               V+       PS     +K      +  +  + A+   S N  +   G +I+     
Sbjct: 258 YIDQVNHFDGAYGPSGSGHIDKEADNKEYRVDSLLKAIAQHSDNVATNILGYYIANKYDH 317

Query: 157 KFAILMSN 164
           KF + ++ 
Sbjct: 318 KFYLQVNA 325


>gi|24111682|ref|NP_706192.1| beta-lactam binding protein AmpH [Shigella flexneri 2a str. 301]
 gi|30061811|ref|NP_835982.1| beta-lactam binding protein AmpH [Shigella flexneri 2a str. 2457T]
 gi|110804397|ref|YP_687917.1| beta-lactam binding protein AmpH [Shigella flexneri 5 str. 8401]
 gi|24050459|gb|AAN41899.1| putative enzyme [Shigella flexneri 2a str. 301]
 gi|30040053|gb|AAP15787.1| putative enzyme [Shigella flexneri 2a str. 2457T]
 gi|110613945|gb|ABF02612.1| putative enzyme [Shigella flexneri 5 str. 8401]
 gi|313646684|gb|EFS11143.1| penicillin-binding protein ampH [Shigella flexneri 2a str. 2457T]
 gi|332758084|gb|EGJ88409.1| penicillin-binding protein ampH [Shigella flexneri 2747-71]
 gi|332761812|gb|EGJ92089.1| penicillin-binding protein ampH [Shigella flexneri 4343-70]
 gi|332764677|gb|EGJ94907.1| penicillin-binding protein ampH [Shigella flexneri K-671]
 gi|332768644|gb|EGJ98825.1| penicillin-binding protein [Shigella flexneri 2930-71]
 gi|333004029|gb|EGK23564.1| penicillin-binding protein ampH [Shigella flexneri K-218]
 gi|333008563|gb|EGK28031.1| penicillin-binding protein ampH [Shigella flexneri VA-6]
 gi|333022020|gb|EGK41265.1| penicillin-binding protein ampH [Shigella flexneri K-304]
          Length = 385

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L   +L  + +    A++   +P+++S                     +VID N
Sbjct: 1   MKRSL-LFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++     T  T    
Sbjct: 117 -PPGARVPTYNGTPITLVNL 135


>gi|15800102|ref|NP_286114.1| beta-lactam binding protein AmpH [Escherichia coli O157:H7 EDL933]
 gi|15829680|ref|NP_308453.1| beta-lactam binding protein AmpH [Escherichia coli O157:H7 str.
           Sakai]
 gi|16128361|ref|NP_414910.1| penicillin-binding protein [Escherichia coli str. K-12 substr.
           MG1655]
 gi|74310943|ref|YP_309362.1| beta-lactam binding protein AmpH [Shigella sonnei Ss046]
 gi|82542867|ref|YP_406814.1| beta-lactam binding protein AmpH [Shigella boydii Sb227]
 gi|89107247|ref|AP_001027.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli str.
           K-12 substr. W3110]
 gi|157156874|ref|YP_001461549.1| beta-lactam binding protein AmpH [Escherichia coli E24377A]
 gi|157159891|ref|YP_001457209.1| beta-lactam binding protein AmpH [Escherichia coli HS]
 gi|168749821|ref|ZP_02774843.1| penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756900|ref|ZP_02781907.1| penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           EC4401]
 gi|168761564|ref|ZP_02786571.1| penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768309|ref|ZP_02793316.1| penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776336|ref|ZP_02801343.1| penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783224|ref|ZP_02808231.1| penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786205|ref|ZP_02811212.1| penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           EC869]
 gi|168800241|ref|ZP_02825248.1| penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           EC508]
 gi|170021251|ref|YP_001726205.1| beta-lactam binding protein AmpH [Escherichia coli ATCC 8739]
 gi|170079963|ref|YP_001729283.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli str.
           K-12 substr. DH10B]
 gi|170680606|ref|YP_001742507.1| beta-lactam binding protein AmpH [Escherichia coli SMS-3-5]
 gi|187734171|ref|YP_001879083.1| beta-lactam binding protein AmpH [Shigella boydii CDC 3083-94]
 gi|191166738|ref|ZP_03028565.1| penicillin-binding protein AmpH [Escherichia coli B7A]
 gi|193065207|ref|ZP_03046280.1| penicillin-binding protein AmpH [Escherichia coli E22]
 gi|194428838|ref|ZP_03061373.1| penicillin-binding protein AmpH [Escherichia coli B171]
 gi|195938566|ref|ZP_03083948.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli O157:H7
           str. EC4024]
 gi|208806646|ref|ZP_03248983.1| penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           EC4206]
 gi|208814976|ref|ZP_03256155.1| penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           EC4045]
 gi|208823098|ref|ZP_03263416.1| penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397433|ref|YP_002269012.1| penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           EC4115]
 gi|209917586|ref|YP_002291670.1| beta-lactam binding protein AmpH [Escherichia coli SE11]
 gi|217324958|ref|ZP_03441042.1| penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           TW14588]
 gi|218552935|ref|YP_002385848.1| beta-lactam binding protein AmpH [Escherichia coli IAI1]
 gi|238899666|ref|YP_002925462.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli BW2952]
 gi|254791551|ref|YP_003076388.1| beta-lactam binding protein AmpH [Escherichia coli O157:H7 str.
           TW14359]
 gi|256020345|ref|ZP_05434210.1| beta-lactam binding protein AmpH [Shigella sp. D9]
 gi|256024007|ref|ZP_05437872.1| beta-lactam binding protein AmpH [Escherichia sp. 4_1_40B]
 gi|260842576|ref|YP_003220354.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli O103:H2
           str. 12009]
 gi|261223851|ref|ZP_05938132.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261256059|ref|ZP_05948592.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli O157:H7
           str. FRIK966]
 gi|291281279|ref|YP_003498097.1| Penicillin-binding protein ampH [Escherichia coli O55:H7 str.
           CB9615]
 gi|301025810|ref|ZP_07189317.1| beta-lactamase [Escherichia coli MS 196-1]
 gi|307137017|ref|ZP_07496373.1| beta-lactam binding protein AmpH [Escherichia coli H736]
 gi|307312248|ref|ZP_07591884.1| beta-lactamase [Escherichia coli W]
 gi|331640888|ref|ZP_08342023.1| beta-lactamase [Escherichia coli H736]
 gi|331651301|ref|ZP_08352326.1| beta-lactamase [Escherichia coli M718]
 gi|331666720|ref|ZP_08367594.1| beta-lactamase [Escherichia coli TA271]
 gi|331676040|ref|ZP_08376752.1| beta-lactamase [Escherichia coli H591]
 gi|332281517|ref|ZP_08393930.1| penicillin-binding protein AmpH [Shigella sp. D9]
 gi|83287767|sp|P0AD71|AMPH_ECO57 RecName: Full=Penicillin-binding protein AmpH
 gi|83287768|sp|P0AD70|AMPH_ECOLI RecName: Full=Penicillin-binding protein AmpH
 gi|12513213|gb|AAG54722.1|AE005216_10 putative enzyme [Escherichia coli O157:H7 str. EDL933]
 gi|1786574|gb|AAC73479.1| penicillin-binding protein [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13359883|dbj|BAB33849.1| putative enzyme [Escherichia coli O157:H7 str. Sakai]
 gi|73854420|gb|AAZ87127.1| putative enzyme [Shigella sonnei Ss046]
 gi|81244278|gb|ABB64986.1| putative enzyme [Shigella boydii Sb227]
 gi|85674517|dbj|BAE76157.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli str.
           K12 substr. W3110]
 gi|157065571|gb|ABV04826.1| penicillin-binding protein AmpH [Escherichia coli HS]
 gi|157078904|gb|ABV18612.1| penicillin-binding protein AmpH [Escherichia coli E24377A]
 gi|169756179|gb|ACA78878.1| beta-lactamase [Escherichia coli ATCC 8739]
 gi|169887798|gb|ACB01505.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli str.
           K-12 substr. DH10B]
 gi|170518324|gb|ACB16502.1| penicillin-binding protein AmpH [Escherichia coli SMS-3-5]
 gi|187431163|gb|ACD10437.1| penicillin-binding protein AmpH [Shigella boydii CDC 3083-94]
 gi|187768320|gb|EDU32164.1| penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015843|gb|EDU53965.1| penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999353|gb|EDU68339.1| penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356023|gb|EDU74442.1| penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362539|gb|EDU80958.1| penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368018|gb|EDU86434.1| penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373632|gb|EDU92048.1| penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           EC869]
 gi|189377404|gb|EDU95820.1| penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           EC508]
 gi|190903249|gb|EDV62971.1| penicillin-binding protein AmpH [Escherichia coli B7A]
 gi|192927181|gb|EDV81802.1| penicillin-binding protein AmpH [Escherichia coli E22]
 gi|194413141|gb|EDX29428.1| penicillin-binding protein AmpH [Escherichia coli B171]
 gi|208726447|gb|EDZ76048.1| penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731624|gb|EDZ80312.1| penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737291|gb|EDZ84975.1| penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158833|gb|ACI36266.1| penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           EC4115]
 gi|209744454|gb|ACI70534.1| putative enzyme [Escherichia coli]
 gi|209744456|gb|ACI70535.1| putative enzyme [Escherichia coli]
 gi|209744458|gb|ACI70536.1| putative enzyme [Escherichia coli]
 gi|209744460|gb|ACI70537.1| putative enzyme [Escherichia coli]
 gi|209744462|gb|ACI70538.1| putative enzyme [Escherichia coli]
 gi|209910845|dbj|BAG75919.1| penicillin-binding protein [Escherichia coli SE11]
 gi|217321179|gb|EEC29603.1| penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           TW14588]
 gi|218359703|emb|CAQ97244.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli IAI1]
 gi|238860063|gb|ACR62061.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli BW2952]
 gi|254590951|gb|ACT70312.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli O157:H7
           str. TW14359]
 gi|257757723|dbj|BAI29220.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli O103:H2
           str. 12009]
 gi|260450437|gb|ACX40859.1| beta-lactamase [Escherichia coli DH1]
 gi|290761152|gb|ADD55113.1| Penicillin-binding protein ampH [Escherichia coli O55:H7 str.
           CB9615]
 gi|299879952|gb|EFI88163.1| beta-lactamase [Escherichia coli MS 196-1]
 gi|306907750|gb|EFN38252.1| beta-lactamase [Escherichia coli W]
 gi|315059655|gb|ADT73982.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli W]
 gi|315135059|dbj|BAJ42218.1| penicillin-binding protein ampH [Escherichia coli DH1]
 gi|320174497|gb|EFW49635.1| Penicillin-binding protein AmpH [Shigella dysenteriae CDC 74-1112]
 gi|320187582|gb|EFW62265.1| Penicillin-binding protein AmpH [Shigella flexneri CDC 796-83]
 gi|320192782|gb|EFW67422.1| Penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           EC1212]
 gi|320201616|gb|EFW76192.1| Penicillin-binding protein AmpH [Escherichia coli EC4100B]
 gi|320638363|gb|EFX08077.1| beta-lactam binding protein AmpH [Escherichia coli O157:H7 str.
           G5101]
 gi|320643744|gb|EFX12867.1| beta-lactam binding protein AmpH [Escherichia coli O157:H- str.
           493-89]
 gi|320649094|gb|EFX17672.1| beta-lactam binding protein AmpH [Escherichia coli O157:H- str. H
           2687]
 gi|320655986|gb|EFX23902.1| beta-lactam binding protein AmpH [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662544|gb|EFX29933.1| beta-lactam binding protein AmpH [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320665114|gb|EFX32207.1| beta-lactam binding protein AmpH [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323160520|gb|EFZ46468.1| penicillin-binding protein ampH [Escherichia coli E128010]
 gi|323164160|gb|EFZ49967.1| penicillin-binding protein ampH [Shigella sonnei 53G]
 gi|323184801|gb|EFZ70172.1| penicillin-binding protein ampH [Escherichia coli 1357]
 gi|323379781|gb|ADX52049.1| beta-lactamase [Escherichia coli KO11]
 gi|323943182|gb|EGB39338.1| beta-lactamase [Escherichia coli E482]
 gi|324116858|gb|EGC10771.1| beta-lactamase [Escherichia coli E1167]
 gi|326341130|gb|EGD64922.1| Penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           1044]
 gi|326346094|gb|EGD69833.1| Penicillin-binding protein AmpH [Escherichia coli O157:H7 str.
           1125]
 gi|331037686|gb|EGI09906.1| beta-lactamase [Escherichia coli H736]
 gi|331051042|gb|EGI23094.1| beta-lactamase [Escherichia coli M718]
 gi|331065944|gb|EGI37828.1| beta-lactamase [Escherichia coli TA271]
 gi|331076098|gb|EGI47380.1| beta-lactamase [Escherichia coli H591]
 gi|332098545|gb|EGJ03511.1| penicillin-binding protein ampH [Shigella boydii 3594-74]
 gi|332103869|gb|EGJ07215.1| penicillin-binding protein AmpH [Shigella sp. D9]
          Length = 385

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L   +L  + +    A++   +P+++S                     +VID N
Sbjct: 1   MKRSL-LFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++     T  T    
Sbjct: 117 -PPGARVPTYNGTPITLVNL 135


>gi|332366017|gb|EGJ43773.1| peptidase family S11 [Streptococcus sanguinis SK1059]
          Length = 279

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 5/112 (4%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-L 118
           D+   +       +P    S  K+    ++ + + + KL ++ +  ++ T          
Sbjct: 46  DLTTGKTFAMNDTQPMTAGSTYKLPLNMLVVDEVAAGKLSMDERFDITNTNYEYRGEHDN 105

Query: 119 YLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKK---FAILMSNKA 166
           Y+                +  S N  + A  E + G EK    F+    +KA
Sbjct: 106 YVGAFNGAMRISDMQEYSLVYSENTPAYALAERLGGMEKAYDMFSRYGQSKA 157


>gi|289449673|ref|YP_003475286.1| hypothetical protein HMPREF0868_0983 [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184220|gb|ADC90645.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 394

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 79/214 (36%), Gaps = 18/214 (8%)

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAATQNPSKLYLKEKTY 125
                D  R  AS  K+    I+ + +   +  L T +   S      + +  Y     +
Sbjct: 174 LQINPDYARTAASTIKLPLALILLDQIAEGEFSLQTVLTYESDDYEGGSGTLQYSPIGGH 233

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD- 184
           ++ +Q +  LI  S N  +     ++             +A  +       ++  GL D 
Sbjct: 234 YSLKQLLDFLIVESDNVAARMLMRWLHTYTGH-------QAMPL------IQHTYGLPDN 280

Query: 185 -KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTG 243
               + TA   + + + L  N P++ KY+ + + R  +R        L   +     K G
Sbjct: 281 IGVNMATAAAMSKVMLQLITN-PKHNKYYDLLRDRMNSRQAVTFIGRLYPDNFEFCHKYG 339

Query: 244 YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277
           Y   S ++ V  +  K+  I++V +    S E++
Sbjct: 340 YYN-STYSEVAYIGAKNPFIMSVYLQAGNSDEKN 372


>gi|320181645|gb|EFW56560.1| Penicillin-binding protein AmpH [Shigella boydii ATCC 9905]
          Length = 385

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L   +L  + +    A++   +P+++S                     +VID N
Sbjct: 1   MKRSL-LFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++     T  T    
Sbjct: 117 -PPGARVPTYNGTPITLVNL 135


>gi|293408519|ref|ZP_06652358.1| beta-lactamase [Escherichia coli B354]
 gi|291471697|gb|EFF14180.1| beta-lactamase [Escherichia coli B354]
          Length = 385

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 51/140 (36%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R + L   +L  + +    A++   +P+++S                     +VID N
Sbjct: 1   MKRCL-LFSAVLCAASLTCVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSYGETRPGNNIRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++     T  T    
Sbjct: 117 -PPGARVPTYNGTPITLVNL 135


>gi|218698721|ref|YP_002406350.1| beta-lactam binding protein AmpH [Escherichia coli IAI39]
 gi|218368707|emb|CAR16447.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli IAI39]
          Length = 385

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L   +L  + +    A++   +P+++S                     +VID N
Sbjct: 1   MKRSL-LFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++     T  T    
Sbjct: 117 -PPGARVPTYNGTPITLVNL 135


>gi|323170454|gb|EFZ56104.1| penicillin-binding protein ampH [Escherichia coli LT-68]
          Length = 383

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L   +L  + +    A++   +P+++S                     +VID N
Sbjct: 1   MKRSL-LFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++     T  T    
Sbjct: 117 -PPGARVPTYNGTPITLVNL 135


>gi|296101495|ref|YP_003611641.1| beta-lactam binding protein AmpH [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055954|gb|ADF60692.1| beta-lactam binding protein AmpH [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 388

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 44/139 (31%), Gaps = 35/139 (25%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSI--------------------VIDVNK 63
           ++R +     +  +S      A  L A    S I                    VID N+
Sbjct: 1   MKRCLLFFAALCAVSFSTAQAAQPLTAPVLASDIADRYANLIYYGSGATGMAMVVIDGNQ 60

Query: 64  ------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
                  +           D     ASLTK+MT  ++ + L    + L+   P+SK A  
Sbjct: 61  RVFRSFGETRPGNNVHPQLDSVIRIASLTKLMTSEMLVKLLDQGVVKLDD--PLSKYA-- 116

Query: 113 QNPSKLYLKEKTYFTTEQG 131
              +++   + T       
Sbjct: 117 PPGARVPTYQGTPIRLVNL 135


>gi|281599599|gb|ADA72583.1| Penicillin-binding protein ampH [Shigella flexneri 2002017]
          Length = 385

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L   +L  + +    A++   +P+++S                     +VID N
Sbjct: 1   MKRSL-LFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++     T  T    
Sbjct: 117 -PPGARVPTYNGTPITLVNL 135


>gi|194477214|ref|YP_002049393.1| possible beta-lactamase family protein [Paulinella chromatophora]
 gi|171192221|gb|ACB43183.1| possible beta-lactamase family protein [Paulinella chromatophora]
          Length = 364

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 64/174 (36%), Gaps = 21/174 (12%)

Query: 32  GKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTK--MMTLYII 89
            K+L LS +  ++A         + ++I ++  +    + D P   ASL +  ++   I 
Sbjct: 89  KKLLALSKVWANLAEGWPDLKASAFLLI-LDDGRYAELEPDIPLPAASLIRFPIL--LIA 145

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGE 149
            + L  +++  N +I +++         + + E    T +     L        S     
Sbjct: 146 MDELDHERMLWNERIKITQD--------VLVSEGDLITKKSLNTQLKIYEV--ASEMIRM 195

Query: 150 FISGSEKKFAIL------MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
             S +   F         ++ +   +G+ +T  KN     +     +ARD  ++
Sbjct: 196 SDSTAINMFIKRLGDKEILNQRFISLGLNSTCIKNWLPDLNSENTISARDLVVI 249


>gi|188495332|ref|ZP_03002602.1| penicillin-binding protein AmpH [Escherichia coli 53638]
 gi|188490531|gb|EDU65634.1| penicillin-binding protein AmpH [Escherichia coli 53638]
          Length = 385

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L   +L  + +    A++   +P+++S                     +VID N
Sbjct: 1   MKRSL-LFSAVLCAASLTSVHAAQPITEPEFASDIVDRYANHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++     T  T    
Sbjct: 117 -PPGARVPTYNGTPITLVNL 135


>gi|323945360|gb|EGB41415.1| beta-lactamase [Escherichia coli H120]
          Length = 385

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L   +L  + +    A++   +P+++S                     +VID N
Sbjct: 1   MKRSL-LFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++     T  T    
Sbjct: 117 -PPGARVPTYNGTPITLVNL 135


>gi|227489337|ref|ZP_03919653.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227090710|gb|EEI26022.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 414

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 15/124 (12%)

Query: 43  SMASELHAKPKYSS------IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQS 95
           + A EL A  +  +      IV DV   +    K  D P  PAS+TK++T       L +
Sbjct: 60  AQAPELEALSQDPALGEFFGIVTDVQTGETVWEKNADVPGRPASITKVLTATAAVHALPA 119

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
               L T++     A   +    Y+K           L  +              +    
Sbjct: 120 GH-RLVTEV----YA---DGDTSYIKAGGDVWLSDTSLDRLAGMVTTPRVVLDTSVWDGF 171

Query: 156 KKFA 159
           + FA
Sbjct: 172 EPFA 175


>gi|218693834|ref|YP_002401501.1| beta-lactam binding protein AmpH [Escherichia coli 55989]
 gi|218350566|emb|CAU96254.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli 55989]
          Length = 385

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L   +L  + +    A++   +P+++S                     +VID N
Sbjct: 1   MKRSL-LFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++     T  T    
Sbjct: 117 -PPGARVPTYNGTPITLVNL 135


>gi|55821083|ref|YP_139525.1| D-alanyl-D-alanine-carboxypeptidase, penicillin-binding protein,
           truncated [Streptococcus thermophilus LMG 18311]
 gi|55823009|ref|YP_141450.1| D-alanyl-D-alanine-carboxypeptidase, penicillin-binding protein,
           truncated [Streptococcus thermophilus CNRZ1066]
 gi|55737068|gb|AAV60710.1| D-alanyl-D-alanine-carboxypeptidase, penicillin-binding protein,
           truncated [Streptococcus thermophilus LMG 18311]
 gi|55738994|gb|AAV62635.1| D-alanyl-D-alanine-carboxypeptidase, penicillin-binding protein,
           truncated [Streptococcus thermophilus CNRZ1066]
          Length = 60

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           R PAS++K MTLY++FE +   ++   T I  + T
Sbjct: 6   RDPASMSKAMTLYLVFETMSKGEISEETVITATPT 40


>gi|170767897|ref|ZP_02902350.1| penicillin-binding protein AmpH [Escherichia albertii TW07627]
 gi|170123385|gb|EDS92316.1| penicillin-binding protein AmpH [Escherichia albertii TW07627]
          Length = 385

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L   +L  + +    A++   +P+++S                     +VID N
Sbjct: 1   MKRSL-LFSVVLCAASLTSVQAAQSITEPEFASDIVERYADHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSYGETRPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++     T  T    
Sbjct: 117 -PPGARVPTYNGTPITLVNL 135


>gi|146281314|ref|YP_001171467.1| beta-lactamase [Pseudomonas stutzeri A1501]
 gi|145569519|gb|ABP78625.1| beta-lactamase [Pseudomonas stutzeri A1501]
          Length = 359

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 3/92 (3%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP--VSKTAATQNP 115
           V D+       +  ++  Y AS  K+     +   ++   L L++ +    S       P
Sbjct: 58  VKDMQTGISVSYHGEDAWYLASTVKVPIAIAVMRRVEQDHLTLDSPVTLLASDYVDGAGP 117

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           +  +       +    +  ++  S N  S   
Sbjct: 118 TNSHA-PGKALSVRYLLDQMLIHSDNTASDML 148


>gi|21222185|ref|NP_627964.1| beta-lactamase-like protein [Streptomyces coelicolor A3(2)]
 gi|10432478|emb|CAC10312.1| putative beta-lactamase related protein [Streptomyces coelicolor
           A3(2)]
          Length = 292

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 65/207 (31%), Gaps = 47/207 (22%)

Query: 42  ISMASELHAKPKYSSI-----VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIF-EYLQS 95
              A+ L A    + +      +D++     G   D+P   AS+ K+  + +   E   +
Sbjct: 4   TVTAARLDAAFADAGVTGWLHAVDIDSGAQVGAGADQPVCTASVHKL-CVLVTLHELAAA 62

Query: 96  KKLHLNTQIPVSKTAATQNPSKL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
            +L L  +I    T  T  P+ L  + +    +       +++ S N  +      +   
Sbjct: 63  GELDLTERIECPPTGRTPGPTGLAAMLDPVLLSLRDAAFLMMSVSDNTAADLLLRRVG-- 120

Query: 155 EKKFAILMSNKAKKIGMQNTI----YKNASGL--------------------------HD 184
                  ++  A ++G+  T     +    G                             
Sbjct: 121 ----LDAVNRTAARLGLTRTRAVYGFGEMLGTMREDAGPDGARALTDPHVITRLRALDPA 176

Query: 185 KNQITTARDQAILGILLRKNF---PQY 208
           +   +T RD   L   + ++    P+Y
Sbjct: 177 RTNHSTPRDMTRLLGAVWRDEACPPEY 203


>gi|146317674|ref|YP_001197386.1| beta-lactamase class A [Streptococcus suis 05ZYH33]
 gi|146319864|ref|YP_001199575.1| Beta-lactamase class A [Streptococcus suis 98HAH33]
 gi|253750935|ref|YP_003024076.1| hypothetical protein SSUSC84_0012 [Streptococcus suis SC84]
 gi|253752834|ref|YP_003025974.1| exported protein [Streptococcus suis P1/7]
 gi|253754659|ref|YP_003027799.1| exported protein [Streptococcus suis BM407]
 gi|145688480|gb|ABP88986.1| Beta-lactamase class A [Streptococcus suis 05ZYH33]
 gi|145690670|gb|ABP91175.1| Beta-lactamase class A [Streptococcus suis 98HAH33]
 gi|251815224|emb|CAZ50788.1| putative exported protein [Streptococcus suis SC84]
 gi|251817123|emb|CAZ54844.1| putative exported protein [Streptococcus suis BM407]
 gi|251819079|emb|CAR44103.1| putative exported protein [Streptococcus suis P1/7]
 gi|292557476|gb|ADE30477.1| beta-lactamase-like protein [Streptococcus suis GZ1]
 gi|319757184|gb|ADV69126.1| Beta-lactamase class A [Streptococcus suis JS14]
          Length = 426

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 47/114 (41%), Gaps = 9/114 (7%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
           ++  Q  G  Q++  Y AS+ K+  LY + E L +  + L T++  +  + +   + +  
Sbjct: 211 LSTGQTAGVNQEKLFYSASIAKLPILYYVQEQLNAGYIDLTTKVKYTAESISFPGAYVAG 270

Query: 121 KEKTY--------FTTEQGILALITRSANDVSTAFGEFISGS-EKKFAILMSNK 165
              +         ++ E+ I      S N  S     +++   +  F  +++ K
Sbjct: 271 GSGSLSKTPDNKDYSVEELINKTAKESDNVASNLLSYYVANKFDSNFYQVITAK 324


>gi|260888547|ref|ZP_05899810.1| beta-lactamase [Selenomonas sputigena ATCC 35185]
 gi|330838152|ref|YP_004412732.1| hypothetical protein Selsp_0298 [Selenomonas sputigena ATCC 35185]
 gi|260861744|gb|EEX76244.1| beta-lactamase [Selenomonas sputigena ATCC 35185]
 gi|329745916|gb|AEB99272.1| hypothetical protein Selsp_0298 [Selenomonas sputigena ATCC 35185]
          Length = 394

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 50/137 (36%), Gaps = 11/137 (8%)

Query: 71  QDEPRYPASLTKM-MTLYIIFEYLQSKKLHLNTQIPVSK-TAATQNPSKLYLKEKTYFTT 128
           Q     PAS+ K+ +  Y   +  +   L L   + +++           +       T 
Sbjct: 177 QSHAMQPASMIKLFILAY-AMQQAKDGTLSLAEPLSITEANIVGGAGQLNWYDRGKQLTI 235

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-- 186
           EQ +  +IT S N  +    + +          +    ++ G  +T  ++   L ++   
Sbjct: 236 EQLLERMITDSDNTATNILIDRLG------IENIDGYIRQKGYADTRLQHKMMLSNQGRP 289

Query: 187 QITTARDQAILGILLRK 203
            +++ +D   L  L+ +
Sbjct: 290 NLSSVKDIGTLLSLIYR 306


>gi|223933451|ref|ZP_03625436.1| conserved hypothetical protein [Streptococcus suis 89/1591]
 gi|302023119|ref|ZP_07248330.1| beta-lactamase [Streptococcus suis 05HAS68]
 gi|330831861|ref|YP_004400686.1| hypothetical protein SSUST3_0012 [Streptococcus suis ST3]
 gi|223897889|gb|EEF64265.1| conserved hypothetical protein [Streptococcus suis 89/1591]
 gi|329306084|gb|AEB80500.1| conserved hypothetical protein [Streptococcus suis ST3]
          Length = 426

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 47/114 (41%), Gaps = 9/114 (7%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
           ++  Q  G  Q++  Y AS+ K+  LY + E L +  + L T++  +  + +   + +  
Sbjct: 211 LSTGQTAGVNQEKLFYSASIAKLPILYYVQEQLNAGYIDLTTKVKYTAESISFPGAYVAG 270

Query: 121 KEKTY--------FTTEQGILALITRSANDVSTAFGEFISGS-EKKFAILMSNK 165
              +         ++ E+ I      S N  S     +++   +  F  +++ K
Sbjct: 271 GSGSLSKTPDNKDYSVEELINKTAKESDNVASNLLSYYVANKFDSNFYQVITAK 324


>gi|218672228|ref|ZP_03521897.1| hypothetical protein RetlG_11572 [Rhizobium etli GR56]
          Length = 287

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 46/159 (28%), Gaps = 34/159 (21%)

Query: 63  KNQMTGFKQDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTA-------ATQ 113
             +      DE    AS  K  +M      + +             S+ A       A +
Sbjct: 34  TGETIERGADEETPSASTRKTSIMMA--ALKAVHEGPAR-------SRRADHYEARFAEE 84

Query: 114 NPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             S ++  L      +    I  ++  S N  +    E ++         +    K IGM
Sbjct: 85  VASGMFRYLTPGIVISLRDAITGMMVLSDNVCTKMVFERLT------LEEVDGYCKSIGM 138

Query: 172 QNTIYK--------NASGLHDKNQITTARDQAILGILLR 202
             T ++        +          TTARDQ  L   + 
Sbjct: 139 DATHHRFLIPPLALSPDHSLRSVTTTTARDQIFLLQAIL 177


>gi|82775726|ref|YP_402073.1| beta-lactam binding protein AmpH [Shigella dysenteriae Sd197]
 gi|309786927|ref|ZP_07681540.1| penicillin-binding protein ampH [Shigella dysenteriae 1617]
 gi|81239874|gb|ABB60584.1| putative enzyme [Shigella dysenteriae Sd197]
 gi|308925253|gb|EFP70747.1| penicillin-binding protein ampH [Shigella dysenteriae 1617]
          Length = 389

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L   +L  + +    A++   +P+++S                     +VID N
Sbjct: 1   MKRSL-LFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++     T  T    
Sbjct: 117 -PPGARVPTYNGTPITLVNL 135


>gi|193068650|ref|ZP_03049611.1| penicillin-binding protein AmpH [Escherichia coli E110019]
 gi|192958013|gb|EDV88455.1| penicillin-binding protein AmpH [Escherichia coli E110019]
          Length = 385

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L   +L  + +    A++   +P+++S                     +VID N
Sbjct: 1   MKRSL-LFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++     T  T    
Sbjct: 117 -PPGARVPTYNGTPITLVNL 135


>gi|283784190|ref|YP_003364055.1| penicillin-binding protein [Citrobacter rodentium ICC168]
 gi|282947644|emb|CBG87199.1| penicillin-binding protein [Citrobacter rodentium ICC168]
          Length = 385

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 35/119 (29%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L   +L  + +    A++  A+P ++S                     +VID N
Sbjct: 1   MKRSL-LFSAVLCAASLTSVQAAQPIAEPVFASDIVERYANHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           +       +           D     AS+TK+MT  ++ + L    + L+   P+SK A
Sbjct: 60  QRVFRSFGETRPGNNVRPQLDSVIRIASITKLMTSEMLVKLLDQGTVRLDD--PLSKYA 116


>gi|55140586|gb|AAV41835.1| TEM-136 beta-lactamase [Pseudomonas aeruginosa]
          Length = 286

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVAALSFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L+ +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLDRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|146260117|gb|ABQ14400.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++++L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEMHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|157151312|ref|YP_001450876.1| hypothetical protein SGO_1598 [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157076106|gb|ABV10789.1| conserved hypothetical protein [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 357

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 2/100 (2%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--K 117
           D+   Q       +P    S  K+    ++ + +   KL +  +  +++T          
Sbjct: 124 DLTTGQTFAMNDTQPMTAGSTYKLPLNMLVVDEVAEGKLSMEERFDITQTHFEYQGEHDN 183

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
                    +        +  S N  + A  E + G +K 
Sbjct: 184 YVAAFNGAMSIPDMQEYSLVYSENTPAYALAERLGGMDKA 223


>gi|254773518|ref|ZP_05215034.1| LpqF protein [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 437

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 6/85 (7%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFE---YLQSKKLHLNTQIPVSKTAATQNPSKLYLKE 122
           + G    E    AS+ K+   Y++      + + ++  + Q+ V+  +     S L L  
Sbjct: 167 VAGTNTGESLPLASIFKL---YVLHALAGAVTAGRVSWDDQLTVTDKSRAVGSSGLALPA 223

Query: 123 KTYFTTEQGILALITRSANDVSTAF 147
               +       +I  S N  +   
Sbjct: 224 GAQVSVRTAAEKMIATSDNMATDLL 248


>gi|118463017|ref|YP_879841.1| LpqF protein [Mycobacterium avium 104]
 gi|118164304|gb|ABK65201.1| LpqF protein [Mycobacterium avium 104]
          Length = 437

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 6/85 (7%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFE---YLQSKKLHLNTQIPVSKTAATQNPSKLYLKE 122
           + G    E    AS+ K+   Y++      + + ++  + Q+ V+  +     S L L  
Sbjct: 167 VAGTNTGESLPLASIFKL---YVLHALAGAVTAGRVSWDDQLTVTDKSRAVGSSGLALPA 223

Query: 123 KTYFTTEQGILALITRSANDVSTAF 147
               +       +I  S N  +   
Sbjct: 224 GAQVSVRTAAEKMIATSDNMATDLL 248


>gi|328882245|emb|CCA55484.1| Beta-lactamase class C and other penicillin binding proteins
           [Streptomyces venezuelae ATCC 10712]
          Length = 276

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 19/157 (12%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDE-PRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           P  ++ V+  +   + G       R+P AS+TK +  Y +    +   + L+        
Sbjct: 17  PTAAAAVVRAD-GTLAGSYGPTGRRFPLASVTKPLAAYAVLVAYEEGAIDLDEP------ 69

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSA-----NDVSTAFGEFIS-GSEKKFAILMS 163
           A  Q  +  +L   T          +          N    A G+ ++  ++  FA  + 
Sbjct: 70  AGPQGATVRHLLAHTSGLAFDENRVMAAPGTRRIYSNTGFEALGDHLAKATDIPFAEYLH 129

Query: 164 NKAKK-IGMQNTIYKNASGLHDKNQITTARDQAILGI 199
               + +GM +T      G   K+ ++T  D      
Sbjct: 130 QAVLEPLGMTSTTL---EGSPAKDGVSTVDDLVRFAA 163


>gi|89053512|ref|YP_508963.1| beta-lactamase [Jannaschia sp. CCS1]
 gi|88863061|gb|ABD53938.1| beta-lactamase [Jannaschia sp. CCS1]
          Length = 353

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 44/153 (28%), Gaps = 35/153 (22%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI--------PVSKTAATQNPSKLYLKEK 123
           D+  +  SLTK MT  +    +++  +  +T +        P    A    P + +L  +
Sbjct: 73  DDAWHVGSLTKSMTATLAARLVEAGLITWDTPVGEILGERIPDMDEAWRDTPLRAFLTHR 132

Query: 124 TYF----------TTEQGILALITR--------------SANDVSTAFGEFI--SGSEKK 157
           +                G  AL                 S ++        +     +  
Sbjct: 133 SGMAANLPARSARQLGDGPRALYVTEMLAGPPDATVGEFSYSNAGYVIAGAMLEDVGDAP 192

Query: 158 FAILMSNKAKK-IGMQNTIYKNASGLHDKNQIT 189
           +  LM       +GM +  +    G   +   T
Sbjct: 193 WEELMQTHVFTPLGMTSAGFGPPLGEAIEGHAT 225


>gi|12005682|gb|AAG44570.1| class A beta-lactamase TEM-87 [Proteus mirabilis]
          Length = 286

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 61/167 (36%), Gaps = 27/167 (16%)

Query: 26  RNIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPR 75
           ++ ++     F +  +   A          +E     +   I +D+N  ++    + E R
Sbjct: 4   KHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEER 63

Query: 76  YPASLTKMMT---LYI---IFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFT 127
           +P     MM+   + +   +   + + +  L  +I  S+      +P ++ +L +    T
Sbjct: 64  FP-----MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MT 116

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQ 172
             +   A IT S N  +      I G ++   F   M +   ++   
Sbjct: 117 VRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLHCW 163


>gi|294666051|ref|ZP_06731312.1| beta-lactamase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604191|gb|EFF47581.1| beta-lactamase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 297

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 6/93 (6%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ++D    +  G +++E     S  K +    + + +   KL L  Q+ +   A+      
Sbjct: 55  LLDSATGKRLGQREEERFPMCSTFKFVLAAAVLQQVDQGKLTLAQQVKI--HASDM-LEH 111

Query: 118 LYLKE---KTYFTTEQGILALITRSANDVSTAF 147
             + E       +  +   A +  S N  +   
Sbjct: 112 APVTERHVGGSLSIGELCRATMIYSDNPAANLL 144


>gi|114705368|ref|ZP_01438276.1| Beta-lactamase class A [Fulvimarina pelagi HTCC2506]
 gi|114540153|gb|EAU43273.1| Beta-lactamase class A [Fulvimarina pelagi HTCC2506]
          Length = 290

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 6/151 (3%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ--IPVSKTAATQNP 115
           V+D    +    + DE    AS  K      + +      L L+    + VS        
Sbjct: 50  VLDTGTGETWEHRADERFPMASTFKSFACSALLDKAAKGSLALDDTVAVEVSDLVTYSPV 109

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQN 173
           ++   +  +  +  +   A +  S N  +    E + G +    F   + + A ++    
Sbjct: 110 TEK--RVGSRLSLREACEATLRTSDNTAANIVLEALGGPQAVTDFMRSIGDDATRLDRYE 167

Query: 174 TIYKNASGLHDKNQITTARDQAILGILLRKN 204
           T    A     ++  T       L  LL  +
Sbjct: 168 TALNEARPGDARDTTTPRAAAESLRTLLLDD 198


>gi|331656426|ref|ZP_08357388.1| beta-lactamase [Escherichia coli TA206]
 gi|331671930|ref|ZP_08372726.1| beta-lactamase [Escherichia coli TA280]
 gi|331681766|ref|ZP_08382399.1| beta-lactamase [Escherichia coli H299]
 gi|331054674|gb|EGI26683.1| beta-lactamase [Escherichia coli TA206]
 gi|331070919|gb|EGI42278.1| beta-lactamase [Escherichia coli TA280]
 gi|331080968|gb|EGI52133.1| beta-lactamase [Escherichia coli H299]
          Length = 385

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L   +L  + +    A++   +P+++S                     +VID N
Sbjct: 1   MKRSL-LFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSYGETRPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++     T  T    
Sbjct: 117 -PPGARVPTYNGTPITLVNL 135


>gi|213161756|ref|ZP_03347466.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
          Length = 147

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 17/29 (58%)

Query: 260 DDPIVAVVMGMPTSQERDQKALELITSFL 288
           D  +++VV+G  T + R  ++ +L+T   
Sbjct: 1   DMRLISVVLGAKTDRIRFNESEKLLTWGF 29


>gi|254389090|ref|ZP_05004320.1| beta-lactamase [Streptomyces clavuligerus ATCC 27064]
 gi|294812455|ref|ZP_06771098.1| Beta-lactamase [Streptomyces clavuligerus ATCC 27064]
 gi|326441086|ref|ZP_08215820.1| beta-lactamase [Streptomyces clavuligerus ATCC 27064]
 gi|197702807|gb|EDY48619.1| beta-lactamase [Streptomyces clavuligerus ATCC 27064]
 gi|294325054|gb|EFG06697.1| Beta-lactamase [Streptomyces clavuligerus ATCC 27064]
          Length = 276

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 56/161 (34%), Gaps = 19/161 (11%)

Query: 52  PKYSSIVIDVNKNQMTGFKQD-EPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           P  ++ V+  +   + G       R+P AS+TK +  Y +    +   + L+        
Sbjct: 15  PTAAAAVVRAD-GTVAGAHGPQHHRFPLASVTKPLAAYAVLVAYEEGAVELDEP------ 67

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRS-----ANDVSTAFGEFISG-SEKKFAILMS 163
           A  +  +  +L   T         A          +N    A  + ++  ++  F   + 
Sbjct: 68  AGPEGSTVRHLLAHTSGLAHDEHRATSAPGERRTYSNAGFEALADHVAKVTDIPFDRYLH 127

Query: 164 NKAKK-IGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
               + +GM +T      G   K+ ++T  D       +++
Sbjct: 128 QAVLEPLGMTST---ALEGSAAKDGVSTVADLTRFAAEVQR 165


>gi|269128704|ref|YP_003302074.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
           anine-endopeptidase [Thermomonospora curvata DSM 43183]
 gi|268313662|gb|ACZ00037.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
           anine-endopeptidase [Thermomonospora curvata DSM 43183]
          Length = 459

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYL 93
           L+  + ++AS   A+   S++VID    +       D P  PAS TK++T       L
Sbjct: 70  LTGELAALASGSGAE--ISAVVIDARTRRTLFAHRADRPAVPASTTKLVTSVAALSAL 125


>gi|134133921|gb|ABO61018.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 298

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 11/119 (9%)

Query: 46  SELHAKPKYSSI-----------VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQ 94
           + L A   ++++           ++D    +  G +QDE     S  K M    +    +
Sbjct: 34  ATLTAAADFAALEKACAGRLGVTLLDTASGRRFGHRQDERFPMCSTFKSMLAATVLSQAE 93

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                L+T++PV       +            T      A I  S N  +      + G
Sbjct: 94  RTPALLDTRVPVRDADLLSHAPVTRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGG 152


>gi|290960784|ref|YP_003491966.1| esterase [Streptomyces scabiei 87.22]
 gi|260650310|emb|CBG73426.1| putative esterase [Streptomyces scabiei 87.22]
          Length = 277

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 52/158 (32%), Gaps = 21/158 (13%)

Query: 52  PKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           P  ++ V+  +   + G           AS+TK +  Y +    +   + L+        
Sbjct: 17  PTAAAAVVRAD-GTVLGTHGPLGHRFPLASVTKPLAAYAVLVAYEEGAIELDE------- 68

Query: 110 AATQNPSKL-YLKEKTYFTTEQGILALITRS-----ANDVSTAFGEFIS-GSEKKFAILM 162
           AA    S + +L   T         A          +N      G+ ++  ++  FA   
Sbjct: 69  AAGPAGSTVRHLLAHTSGLAFDEHRATAAPGERRLYSNAGFEVLGDHVAKAADMPFAEYA 128

Query: 163 SNKAKK-IGMQNTIYKNASGLHDKNQITTARDQAILGI 199
                + +GM +T   +  G   K+ ++T  D      
Sbjct: 129 RQAVLEPLGMTST---SLDGSPAKDGVSTVDDLVRFAA 163


>gi|218703656|ref|YP_002411175.1| beta-lactam binding protein AmpH [Escherichia coli UMN026]
 gi|293403492|ref|ZP_06647583.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli
           FVEC1412]
 gi|298379103|ref|ZP_06988984.1| penicillin-binding protein ampH [Escherichia coli FVEC1302]
 gi|331661746|ref|ZP_08362669.1| beta-lactamase [Escherichia coli TA143]
 gi|218430753|emb|CAR11627.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli UMN026]
 gi|284920180|emb|CBG33239.1| penicillin-binding protein [Escherichia coli 042]
 gi|291429345|gb|EFF02365.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli
           FVEC1412]
 gi|298280216|gb|EFI21720.1| penicillin-binding protein ampH [Escherichia coli FVEC1302]
 gi|331060168|gb|EGI32132.1| beta-lactamase [Escherichia coli TA143]
          Length = 385

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L   +L  + +    A++   +P+++S                     +VID N
Sbjct: 1   MKRSL-LFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADYIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSYGETRPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++     T  T    
Sbjct: 117 -PPGARVPTYNGTPITLVNL 135


>gi|333021309|gb|EGK40562.1| penicillin-binding protein ampH [Shigella flexneri K-227]
          Length = 385

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++     +   S+  +  A  +  +P+++S                     +VID N
Sbjct: 1   MKRSLLFSAVLCAASLTSVHTAQPIT-EPEFASDIVDRYADHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++     T  T    
Sbjct: 117 -PPGARVPTYNGTPITLVNL 135


>gi|25029101|ref|NP_739155.1| putative D-alanyl-D-alanine carboxypeptidase [Corynebacterium
           efficiens YS-314]
 gi|259505901|ref|ZP_05748803.1| penicillin-binding protein, D-ala-D-ala carboxypeptidase
           [Corynebacterium efficiens YS-314]
 gi|23494388|dbj|BAC19355.1| putative D-alanyl-D-alanine carboxypeptidase [Corynebacterium
           efficiens YS-314]
 gi|259166505|gb|EEW51059.1| penicillin-binding protein, D-ala-D-ala carboxypeptidase
           [Corynebacterium efficiens YS-314]
          Length = 421

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 7/102 (6%)

Query: 60  DVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           D    ++   +  D P  PAS TK++T           +L  +  I           + +
Sbjct: 83  DTATGEVIWSQNPDTPVRPASATKILTA-----AAALYELGWDDTIHTDVVVGQTPGTAV 137

Query: 119 YLKEKT-YFTTEQGILALITRSANDVSTAFGEFISGSEKKFA 159
                    +T+Q        +  D+ T   +    S++ FA
Sbjct: 138 IRAAGDVTLSTDQLDDLAAQLTGQDIDTVLVDTSIWSDETFA 179


>gi|238926465|ref|ZP_04658225.1| possible beta-lactamase class A [Selenomonas flueggei ATCC 43531]
 gi|238885659|gb|EEQ49297.1| possible beta-lactamase class A [Selenomonas flueggei ATCC 43531]
          Length = 317

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 10/136 (7%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL--YLKEKTYFTT 128
           Q E    AS+ K+  L    E ++  +L L   + + + A     + +     + +  + 
Sbjct: 98  QSESMRSASMIKVFILGTAMEQVRDGRLSLAQTLTL-RAADKVGGAGVLSGYADGSELSL 156

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI---GMQNTIYKNASGLHDK 185
           +  +  +IT S N  +    + +   E    I  +     I    M +T    A G    
Sbjct: 157 DTVLRLMITESDNTATNMMIDLLGMEEINAYITRNGYTDTILQRKMMDTQ-AAAEGW--- 212

Query: 186 NQITTARDQAILGILL 201
              T+  D       L
Sbjct: 213 ENYTSVSDLGRFFRRL 228


>gi|298372227|ref|ZP_06982217.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275131|gb|EFI16682.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Bacteroidetes oral taxon 274 str. F0058]
          Length = 470

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMM 84
           R + L+  I+F    ++  +S   A  K S I+ D+   +    K  D+   PAS+TK++
Sbjct: 5   RRLFLLVAIVFYGNTLLPQSS---AYQKLSLIMTDLETGETFVNKNGDQLLTPASITKLI 61

Query: 85  TLYIIFEYLQSKKLHLNTQIPVS 107
           T     E +        T + + 
Sbjct: 62  TTATALE-ILGDNFTFKTTVQID 83


>gi|118590430|ref|ZP_01547832.1| Beta-lactamase class A [Stappia aggregata IAM 12614]
 gi|118436893|gb|EAV43532.1| Beta-lactamase class A [Stappia aggregata IAM 12614]
          Length = 331

 Score = 45.6 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 8/114 (7%)

Query: 65  QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL---YLK 121
           ++  F  DE    AS  K+     + + +   +L L+  + V         + L   +  
Sbjct: 57  EVIAFNGDETFAMASTYKVAIATTVLDRVDRGELSLDQLVEVPLDMFVTGVNALAETFPH 116

Query: 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
                +    I  +IT S N  +        G     A  ++   +++G+ +  
Sbjct: 117 PGIQLSVANLIEVMITESDNTATDVSMGLAGG-----AAAVTENLRRLGITDFR 165


>gi|319945972|ref|ZP_08020221.1| beta-lactamase [Streptococcus australis ATCC 700641]
 gi|319747780|gb|EFW00025.1| beta-lactamase [Streptococcus australis ATCC 700641]
          Length = 427

 Score = 45.6 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 9/117 (7%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
           V+  +  G  +D+  Y AS+ K++ LY   + L    + L T +  +K       +    
Sbjct: 212 VDTGKTAGIHEDQEMYSASIAKLLYLYYTQKELNENHVDLQTPLKYTKEVNDYPGAYEPE 271

Query: 121 KEKTY--------FTTEQGILALITRSANDVSTAFGEFI-SGSEKKFAILMSNKAKK 168
              +         +T    I  +   S N      G ++   S+K+F  + +  A K
Sbjct: 272 GSGSISKTPDDKDYTVADLINRVAKESDNVAHNILGYYVTHQSDKEFQKVTNKIAGK 328


>gi|198042727|gb|ABV83044.3| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 303

 Score = 45.6 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 11/119 (9%)

Query: 46  SELHAKPKYSSI-----------VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQ 94
           + L A   ++++           ++D    +  G +QDE     S  K M    +    +
Sbjct: 39  ATLTAAADFAALEKACAGRLGVTLLDTASGRRFGHRQDERFPMCSTFKSMLAATVLSQAE 98

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                L+T++PV       +            T      A I  S N  +      + G
Sbjct: 99  RTPALLDTRVPVRDADLLSHAPVTRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGG 157


>gi|332686539|ref|YP_004456313.1| beta-lactamase [Melissococcus plutonius ATCC 35311]
 gi|332370548|dbj|BAK21504.1| beta-lactamase [Melissococcus plutonius ATCC 35311]
          Length = 318

 Score = 45.6 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 7/124 (5%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQS 95
           +S I++  A+    +   S I  D+           +  Y AS  K+ +T+ +  + + S
Sbjct: 74  ISTILMDTAASFSGEVGISYI--DLTTGNYCSVNDQKEFYTASTIKVPLTMLVA-DTVTS 130

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTY--FTTEQGILALITRSANDVSTAFGEFISG 153
            + +   +IP       +  + + L   T   ++        I  S N       + + G
Sbjct: 131 GEKNWQDKIPYHAETDYEEGTGI-LCYNTQPAYSLGTLQKYAIIYSDNIAKNMLYDTLGG 189

Query: 154 SEKK 157
           SE  
Sbjct: 190 SETA 193


>gi|269797551|ref|YP_003311451.1| beta-lactamase class A-like protein [Veillonella parvula DSM 2008]
 gi|269094180|gb|ACZ24171.1| Beta-lactamase class A-like protein [Veillonella parvula DSM 2008]
          Length = 272

 Score = 45.6 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 66/170 (38%), Gaps = 30/170 (17%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-LKEKTYFTTEQGILALI 136
           ASL K++ +  +F   ++++L +N  +P+S+T   +    L  L  K  FT  +    ++
Sbjct: 55  ASLIKVLIMEYVFHLARTEQLDINDTVPLSRTPRVEGGGALQELVGKHSFTYLELCRLMM 114

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ----NTIYKNASGLHD-KNQITTA 191
             S N  +      +          ++ +A+K+G+     N +  + + L + ++   TA
Sbjct: 115 VLSDNIATNLLITVLG------MENINARAEKLGVDEMELNRMMMDFNALAEGRDNHITA 168

Query: 192 RDQAILGILL------------------RKNFPQYYKYFSIRKFRYRNRI 223
              A L   +                  R+ F     ++     R+ ++ 
Sbjct: 169 MSLARLYKHIFECRDRDVYGREMWNILGRQQFRDILPFYWGEGIRFHHKT 218


>gi|237743740|ref|ZP_04574221.1| beta-lactamase [Fusobacterium sp. 7_1]
 gi|229432771|gb|EEO42983.1| beta-lactamase [Fusobacterium sp. 7_1]
          Length = 261

 Score = 45.6 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 55/143 (38%), Gaps = 20/143 (13%)

Query: 72  DEPRYPASLTKMMTLYII--FEYLQSKKLHLNTQIPVSKTAATQNPSKLY--LKEKTYFT 127
           ++    AS+ K++   +    + +   K  L+  I V++ A       +   L    +FT
Sbjct: 40  NKKVLSASMIKLL--ILAELVKKVSENKFSLSDAITVTE-AMKTGGDGVLKELNSDHHFT 96

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK-- 185
            ++    +I  S N  +    +F+          ++   +++ ++ T +     +  +  
Sbjct: 97  LKELATLMIIVSDNQATNILIDFLG------MKNINQLGRELDLKET-FLGRKMMDIEAR 149

Query: 186 ----NQITTARDQAILGILLRKN 204
               +  T A D ++L  L+ + 
Sbjct: 150 KKGYDNYTCADDISLLLKLIYQE 172


>gi|222112453|ref|YP_002554717.1| d-alanyl-d-alanine
           carboxypeptidase/d-alanyl-d-alanine-endopeptidase
           [Acidovorax ebreus TPSY]
 gi|221731897|gb|ACM34717.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Acidovorax ebreus TPSY]
          Length = 499

 Score = 45.6 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 7/75 (9%)

Query: 51  KPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +   S++V++V   Q     + D P  PAS+ K++T Y   + L       +T  PV   
Sbjct: 70  REALSALVVEVEGRQPRLAHRADAPANPASVMKLVTTYAALDLLGPA-FTWDT--PVYLD 126

Query: 110 AATQNPS---KLYLK 121
           AA Q  S    +Y+K
Sbjct: 127 AAPQGGSLRGNVYIK 141


>gi|146260211|gb|ABQ14433.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 45.6 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 3/121 (2%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESLRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKK 168
             +  S          T  +   A IT S N  +      I G ++   F   M +   +
Sbjct: 92  LVEYSSVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTR 151

Query: 169 I 169
           +
Sbjct: 152 L 152


>gi|29831205|ref|NP_825839.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces avermitilis
           MA-4680]
 gi|29608319|dbj|BAC72374.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           avermitilis MA-4680]
          Length = 461

 Score = 45.6 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEY 92
           + S+ V+DV   +    K  DE   PAS TK+ T   +   
Sbjct: 90  RRSAAVVDVATGRRLYGKGVDEALTPASTTKIATAVAVLSA 130


>gi|24379103|ref|NP_721058.1| hypothetical protein SMU.630 [Streptococcus mutans UA159]
 gi|24377005|gb|AAN58364.1|AE014907_1 hypothetical protein SMU_630 [Streptococcus mutans UA159]
          Length = 351

 Score = 45.6 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/94 (12%), Positives = 31/94 (32%), Gaps = 2/94 (2%)

Query: 62  NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK 121
             N++    + +P    S  K+    +  + ++  KL ++T   ++             +
Sbjct: 120 KTNEVIAMNETQPMTAGSTYKLPLNMLAVDAVEKGKLSMDTPYDITDLDYEYAGEYQAYR 179

Query: 122 E--KTYFTTEQGILALITRSANDVSTAFGEFISG 153
                  T  +     +  S N  + A  + + G
Sbjct: 180 NQFGNDMTISEMQEYSLVYSENTPAYAMAKALGG 213


>gi|134133899|gb|ABO61007.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 298

 Score = 45.6 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 29/96 (30%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ++D    +  G +QDE     S  K M    +    +     L+ ++PV       +   
Sbjct: 57  LLDTASGRRLGHRQDERFPMCSTFKSMLAATVLSQAERAPALLDRRVPVRDADLLSHAPV 116

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                    T      A +  S N  +      + G
Sbjct: 117 TRRHAGKDMTVRDLCRATVITSDNTAANLLFGVVGG 152


>gi|290580883|ref|YP_003485275.1| hypothetical protein SmuNN2025_1357 [Streptococcus mutans NN2025]
 gi|254997782|dbj|BAH88383.1| hypothetical protein [Streptococcus mutans NN2025]
          Length = 322

 Score = 45.6 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/94 (12%), Positives = 31/94 (32%), Gaps = 2/94 (2%)

Query: 62  NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK 121
             N++    + +P    S  K+    +  + ++  KL ++T   ++             +
Sbjct: 91  KTNEVIAMNETQPMTAGSTYKLPLNMLAVDAVEKGKLSMDTPYDITDLDYEYAGEYQAYR 150

Query: 122 E--KTYFTTEQGILALITRSANDVSTAFGEFISG 153
                  T  +     +  S N  + A  + + G
Sbjct: 151 NQFGNDMTISEMQEYSLVYSENTPAYAMAKALGG 184


>gi|295703598|ref|YP_003596673.1| hypothetical protein BMD_1464 [Bacillus megaterium DSM 319]
 gi|294801257|gb|ADF38323.1| conserved hypothetical protein [Bacillus megaterium DSM 319]
          Length = 259

 Score = 45.6 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 12/132 (9%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQI-PVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           AS  K++     F  + +  L L + I  + K           L + T+   E+ +  +I
Sbjct: 45  ASTIKLLLAIEAFRQIDAGILDLTSVIQRMEKNTVGGAGVLKALPQLTHIKVEELLTLMI 104

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT--IYKNASGLHDK---NQITTA 191
             S N  +      +          ++  AK +G++ T         +  +   +  T A
Sbjct: 105 IVSDNTATNELISLVG------FEKINECAKNLGLKKTVLNRYMMDEIAVEKGIDNYTCA 158

Query: 192 RDQAILGILLRK 203
            D       + +
Sbjct: 159 SDVVKCLREIYE 170


>gi|282849999|ref|ZP_06259381.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
 gi|282580188|gb|EFB85589.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
          Length = 272

 Score = 45.6 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 66/170 (38%), Gaps = 30/170 (17%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-LKEKTYFTTEQGILALI 136
           ASL K++ +  +F   ++++L +N  +P+S+T   +    L  L  K  FT  +    ++
Sbjct: 55  ASLIKVLIMEYVFHLARTEQLDINDTVPLSRTPRVEGGGALQELVGKHSFTYLELCRLMM 114

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ----NTIYKNASGLHD-KNQITTA 191
             S N  +      +          ++ +A+K+G+     N +  + + L + ++   TA
Sbjct: 115 VLSDNIATNLLITVLG------MENINARAEKLGVDEMELNRMMMDFNALAEGRDNHITA 168

Query: 192 RDQAILGILL------------------RKNFPQYYKYFSIRKFRYRNRI 223
              A L   +                  R+ F     ++     R+ ++ 
Sbjct: 169 MSLARLYKHIFECRDRDAYGREMWNILGRQQFRDILPFYWGEGIRFHHKT 218


>gi|306834612|ref|ZP_07467724.1| beta-lactamase [Streptococcus bovis ATCC 700338]
 gi|304423248|gb|EFM26402.1| beta-lactamase [Streptococcus bovis ATCC 700338]
          Length = 428

 Score = 45.6 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 8/115 (6%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----V 106
           K  YS  V  ++     G   D   Y AS+ K+ TLY +   LQ   +  N  +     V
Sbjct: 203 KSNYSIYVKQLSTQTTAGINADTVMYSASIAKLATLYYVEGKLQDGTISANDTLKYVDAV 262

Query: 107 SKTAATQNPSKLY----LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           +  A   +PS         +   +  +  + A+   S N  +   G +++     
Sbjct: 263 NSFAKAYDPSGSGKISKTADNKEYAIDDLLKAVAQNSDNVATNILGYYVANQYDD 317


>gi|262283168|ref|ZP_06060935.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
 gi|262261420|gb|EEY80119.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
          Length = 357

 Score = 45.6 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 2/100 (2%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--K 117
           D+   Q       +P    S  K+    ++ + +   KL +  +  +++T          
Sbjct: 124 DLTTGQTFAVNDTQPMTAGSTYKLPLNMLVVDEVAEGKLSMEERFDITQTHFEYQGEHDN 183

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
                    +        +  S N  + A  E + G +K 
Sbjct: 184 YVAAFNGAMSIPDMQEYSLVYSENTPAYALAERLGGMDKA 223


>gi|322433039|ref|YP_004210288.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidobacterium
           sp. MP5ACTX9]
 gi|321165266|gb|ADW70970.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidobacterium
           sp. MP5ACTX9]
          Length = 310

 Score = 45.6 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 60/157 (38%), Gaps = 22/157 (14%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYI-IFEYLQSKKLHLNTQIPVSKTAATQNPSKL- 118
           +   +  G   D+    AS+ K+ T+     E +++ K+ L+  I V K +     S + 
Sbjct: 46  LKTGETVGLDADKVVQTASVIKL-TILFDAMEQVRAGKVKLDDAI-VLKKSGQVGGSGIL 103

Query: 119 -YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI-- 175
                    T    ++ +IT+S N  +        G        ++ + + +G++NT   
Sbjct: 104 QLFDTPLTLTLRDVLMLMITQSDNTGTN-LAIDKLG-----LANINGETRALGLKNTWLY 157

Query: 176 ---YKNASGLHDKNQ------ITTARDQAILGILLRK 203
              +  A+     +Q       TT R+ A +   + K
Sbjct: 158 KKVFTPATEPMPADQKIYGLGKTTGREMAKVLERIYK 194


>gi|6977955|emb|CAB75347.1| L2 b-lactamase [Stenotrophomonas maltophilia]
          Length = 303

 Score = 45.6 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 9/99 (9%)

Query: 61  VNKN---QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           +N     ++ G +QDE     S  K M +  +     + ++ L+T++P+   A     S 
Sbjct: 63  LNTGNGRRIGGHRQDERFPMCSTFKSMLVAHVLSLADAGRVSLDTRVPI---AGKDLLSY 119

Query: 118 LYLK---EKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             +         T        +T S N  +    E + G
Sbjct: 120 APVARRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGG 158


>gi|281210609|gb|EFA84775.1| beta-lactamase-type transpeptidase fold containing protein
           [Polysphondylium pallidum PN500]
          Length = 333

 Score = 45.6 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 21/113 (18%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTY 125
           +     D  +  AS  K+  +  + + + +   +LNT I  S                  
Sbjct: 78  IYSENSDNGQQTASTIKLWIMMAVLQDINNGLYNLNTVIQCS---------------GQT 122

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            T +  +  +I  S N  +    +      +     ++   K++GM N+ +  
Sbjct: 123 ITIDACLELMIGISDNCATYDMAK------QTTLNHVNQLFKQLGMVNSGFHE 169


>gi|83645112|ref|YP_433547.1| beta-lactamase class A [Hahella chejuensis KCTC 2396]
 gi|83633155|gb|ABC29122.1| Beta-lactamase class A [Hahella chejuensis KCTC 2396]
          Length = 299

 Score = 45.6 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 59/168 (35%), Gaps = 22/168 (13%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAKP----------------KYSSIVIDVNKNQMTG 68
           +R   L+G      +++ S  S    KP                +   +V+D    +  G
Sbjct: 8   RRLTALLGSACVGGLLLFSGVSGAADKPVQLEKVFAKLEERLDARMGVMVLDTQTGRTWG 67

Query: 69  FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAATQNPSKLYLKEKTYFT 127
            +  E     S  K++    +   + + + +L  ++P+ ++   T +P           T
Sbjct: 68  QRGQERFPLCSTFKVLACAALLAKVDAGEENLERRVPIHARDIVTYSPVTKDRIGGEGMT 127

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             +   A +T+S N  +    + + G        ++   + +G + T 
Sbjct: 128 LRELCQAAMTKSDNTAANLVLKAVGGPP-----RLTEYLRGLGDETTR 170


>gi|188532565|ref|YP_001906362.1| beta-lactam binding protein AmpH [Erwinia tasmaniensis Et1/99]
 gi|188027607|emb|CAO95457.1| Penicillin-binding protein [Erwinia tasmaniensis Et1/99]
          Length = 391

 Score = 45.6 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE 129
           ++D     ASLTK+MT  ++ +  +  +L L+   P+SK A     S++   +       
Sbjct: 78  QKDSLIRVASLTKLMTSQLMVKLAEEGRLQLDD--PLSKYA--PPGSRVPSYDGQPIRLI 133

Query: 130 QG 131
             
Sbjct: 134 NL 135


>gi|27805134|emb|CAD60969.1| class A beta-lactamase [Escherichia hermannii]
          Length = 290

 Score = 45.6 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 64/185 (34%), Gaps = 23/185 (12%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPK------------YSSI---VIDVNKNQMTGFK 70
           + I  +  I FL++I +   ++    P             ++ I   V++     + G++
Sbjct: 2   KKITPLFAIAFLTLIALLAPAQASVTPDMTDFLRQQEQRLHARIGMAVVNAQGETVFGYR 61

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA--TQNPSKLYLKEKTYFTT 128
           QDE     S  K +    + E LQ     L+ Q+ +   A       +K YL      + 
Sbjct: 62  QDERFPLTSTFKTLACAALLERLQKNGGSLDEQVTIPPDALLDYAPVTKNYLAP-ATISL 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
                A ++ S N        ++ G +      ++   + IG   T         ++   
Sbjct: 121 RMLCAAAVSYSDNTAGNRILTYLGGPDA-----VTQFMRGIGEHVTRLDRTEPTLNEATP 175

Query: 189 TTARD 193
             ARD
Sbjct: 176 GDARD 180


>gi|60594088|pdb|1XXM|A Chain A, The Modular Architecture Of Protein-Protein Binding Site
 gi|60594090|pdb|1XXM|B Chain B, The Modular Architecture Of Protein-Protein Binding Site
          Length = 263

 Score = 45.6 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 17  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 76

Query: 111 --ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             A    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 77  LVAASPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 134

Query: 167 KKI 169
            ++
Sbjct: 135 TRL 137


>gi|119964179|ref|YP_945959.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Arthrobacter aurescens TC1]
 gi|119951038|gb|ABM09949.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Arthrobacter aurescens TC1]
          Length = 481

 Score = 45.6 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
             S +V+D +  Q+   ++    R PAS  K++T     +      L   T+   ++  A
Sbjct: 100 SISGVVMDASTGQVLFDREATANRIPASNMKLLTAVSALKV-----LGPETRFT-TRVLA 153

Query: 112 TQNPSKLYLKEK 123
           + NPS + L   
Sbjct: 154 SDNPSTVVLTGG 165


>gi|39976195|ref|XP_369488.1| hypothetical protein MGG_05976 [Magnaporthe oryzae 70-15]
 gi|145011750|gb|EDJ96406.1| hypothetical protein MGG_05976 [Magnaporthe oryzae 70-15]
          Length = 405

 Score = 45.2 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 24/65 (36%)

Query: 66  MTGFKQDEPRY------------------------PASLTKMMTLYIIFEYLQSKKLHLN 101
           +   K DE  Y                         AS TK+MT  +  + +Q   ++L+
Sbjct: 23  LLAAKNDETIYSHAAGVRSQLQPGNPAFDMDTVVSIASCTKLMTAVLALQVVQDGLINLD 82

Query: 102 TQIPV 106
              PV
Sbjct: 83  DAEPV 87


>gi|1524368|emb|CAA63714.1| extended-spectrum beta-lactamase [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|124248221|emb|CAL64954.1| PER-2 beta-lactamase [Citrobacter freundii]
          Length = 308

 Score = 45.2 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 73/232 (31%), Gaps = 37/232 (15%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN--PSKLYLKEKTYFT--T 128
           E     S+ K+    ++   +   KL LN  + V++ A  QN     +   +   FT   
Sbjct: 65  EKFPMQSVFKLHLAMLVLHQVDQGKLDLNQSVTVNRAAVLQNTWSPMMKDHQGDEFTVAV 124

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK---NASGLHDK 185
           +Q +   ++ S N       E + G +      +    + +G++              D+
Sbjct: 125 QQLLQYSVSHSDNVACDLLFELVGGPQA-----LHAYIQSLGVKEAAVVANEAQMHADDQ 179

Query: 186 NQITTARDQAILGILLRK--------NFPQYYKYFSIRKFRYRNRIITNHNKLL------ 231
            Q            +L+K           Q   +  + +     + +     LL      
Sbjct: 180 VQYQNWTSMKAAAQVLQKFEQKKQLSETSQALLWKWMVETTTGPQRLK---GLLPAGTIV 236

Query: 232 ---NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ-ERDQK 279
                   +   KT  T ++G      +     P++  V    +++ ER  +
Sbjct: 237 AHKTGTSGVRAGKTAATNDAG----VIMLPDGRPLLVAVFVKDSAESERTNE 284


>gi|125717573|ref|YP_001034706.1| hypothetical protein SSA_0722 [Streptococcus sanguinis SK36]
 gi|125497490|gb|ABN44156.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
          Length = 386

 Score = 45.2 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 5/112 (4%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-L 118
           D+   +       +P    S  K+    ++ + + + KL ++ +  ++ T          
Sbjct: 153 DLTTGKTFAMNDTQPMTAGSTYKLPLNMLVVDEVVAGKLSMDERFDITNTNYEYRGEHDN 212

Query: 119 YLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKK---FAILMSNKA 166
           Y+                +  S N  + A  E + G EK    F+    +KA
Sbjct: 213 YVGAFNGAMRISDMQEYSLVYSENTPAYALAERLGGMEKAYDMFSRYGQSKA 264


>gi|300918250|ref|ZP_07134855.1| beta-lactamase [Escherichia coli MS 115-1]
 gi|300414593|gb|EFJ97903.1| beta-lactamase [Escherichia coli MS 115-1]
          Length = 376

 Score = 45.2 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D     ASLTK+MT  ++ + L    + LN   P+SK A     +++     T  T    
Sbjct: 71  DSVVRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA--PPGTRVPTYNGTPITLVNL 126


>gi|74474872|dbj|BAE44424.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
 gi|74474874|dbj|BAE44425.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 289

 Score = 45.2 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 29/96 (30%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ++D    +  G +QDE     S  K M    +    +     L+ ++PV       +   
Sbjct: 51  LLDTASGRRIGHRQDERFPMCSTFKSMLAATVLSQAERMPALLDRRVPVRDADLLSHAPV 110

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                    T      A I  S N  +      + G
Sbjct: 111 TRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGG 146


>gi|146260186|gb|ABQ14423.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 45.2 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             + P  ++ +L +    T  +   A IT S N  +      I G ++   F   M + A
Sbjct: 92  LVEYPPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHA 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|317033957|ref|XP_001395702.2| transesterase [Aspergillus niger CBS 513.88]
          Length = 407

 Score = 45.2 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 15/27 (55%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           AS+TK+MT     + ++   + L+  +
Sbjct: 71  ASMTKLMTCIAALQLVERGTISLDDDV 97


>gi|134080426|emb|CAK41175.1| unnamed protein product [Aspergillus niger]
          Length = 380

 Score = 45.2 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 15/27 (55%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           AS+TK+MT     + ++   + L+  +
Sbjct: 71  ASMTKLMTCIAALQLVERGTISLDDDV 97


>gi|299820743|ref|ZP_07052632.1| conserved hypothetical protein [Listeria grayi DSM 20601]
 gi|299817764|gb|EFI84999.1| conserved hypothetical protein [Listeria grayi DSM 20601]
          Length = 254

 Score = 45.2 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 60/148 (40%), Gaps = 15/148 (10%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYII--FEYLQSKKLHLNT 102
           +++   P    ++I  N+ ++   ++ E  +P ASL K+        +E +   K+    
Sbjct: 4   ADMKQPPFEYGLLI-ANEEKILYAEKSEKLFPSASLIKL--AVYAYYYELICEGKITAAK 60

Query: 103 QIPVSKTAATQN-PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAI 160
            + VS  A          L +K  +T E+ +  +I  S N  +    E +  S  +K+  
Sbjct: 61  IVVVSPEAYPGGAGILALLPQKDRWTIEELLTLMIAVSDNAATNLLIEEVGMSTIQKWLQ 120

Query: 161 L----MSNKAKKIGMQNT---IYKNASG 181
           L       +  ++ M  T    Y NASG
Sbjct: 121 LKGWDSDVQLNRLMMAKTKPDNYVNASG 148


>gi|224370116|ref|YP_002604280.1| DacB [Desulfobacterium autotrophicum HRM2]
 gi|223692833|gb|ACN16116.1| DacB [Desulfobacterium autotrophicum HRM2]
          Length = 393

 Score = 45.2 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 34 ILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYL 93
          +LFL++ ++     +   PK   +V D +   M     D+   PAS  K++T    F  L
Sbjct: 10 LLFLAMALVQSPGAIAGTPKIGYLVADSHGKVMDALNPDQAFVPASTFKLLTALGAFNEL 69


>gi|322386422|ref|ZP_08060051.1| beta-lactamase [Streptococcus cristatus ATCC 51100]
 gi|321269508|gb|EFX52439.1| beta-lactamase [Streptococcus cristatus ATCC 51100]
          Length = 427

 Score = 45.2 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 46/127 (36%), Gaps = 9/127 (7%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT- 109
           K  +S  V  +   +  G   D+  Y AS+TK+  LY   E L +  L L+ ++  +   
Sbjct: 202 KADFSIYVKQLETGKEAGINPDQQMYSASVTKIPYLYYAQEQLNNHSLSLDKKLKYTAAV 261

Query: 110 -----AATQNPSKLYLKE--KTYFTTEQGILALITRSANDVSTAFGEFISG-SEKKFAIL 161
                A     S    K      ++ +  I  +   S N        + S  S+ +F   
Sbjct: 262 NDFAGAYDPEGSGSISKSANDKEYSVQDLINGVAKESDNVAHNILAYYTSNQSDSQFQNT 321

Query: 162 MSNKAKK 168
           +   A K
Sbjct: 322 IEKIAGK 328


>gi|134133905|gb|ABO61010.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 299

 Score = 45.2 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 9/99 (9%)

Query: 61  VNKN---QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           +N     ++ G +QDE     S  K M +  +     + ++ L+T++P+   A     S 
Sbjct: 58  LNTGNGRRIGGHRQDERFPMCSTFKSMLVAHVLSLADAGRVSLDTRVPI---AGKDLLSY 114

Query: 118 LYLK---EKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             +         T        +T S N  +    E + G
Sbjct: 115 APVARRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGG 153


>gi|331645545|ref|ZP_08346649.1| beta-lactamase [Escherichia coli M605]
 gi|330910166|gb|EGH38676.1| penicillin-binding protein AmpH [Escherichia coli AA86]
 gi|331045707|gb|EGI17833.1| beta-lactamase [Escherichia coli M605]
          Length = 385

 Score = 45.2 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L   +L+ + +    A++   +P+++S                     +VID N
Sbjct: 1   MKRSL-LFSAVLYAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSYGETRPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++     T  T    
Sbjct: 117 -PPGARVPTYNGTPITLVNL 135


>gi|306813159|ref|ZP_07447352.1| beta-lactam binding protein AmpH [Escherichia coli NC101]
 gi|305853922|gb|EFM54361.1| beta-lactam binding protein AmpH [Escherichia coli NC101]
          Length = 385

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L   +L+ + +    A++   +P+++S                     +VID N
Sbjct: 1   MKRSL-LFSAVLYAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSYGETRPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++     T  T    
Sbjct: 117 -PPGARVPTYNGTPITLVNL 135


>gi|158522236|ref|YP_001530106.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Desulfococcus
          oleovorans Hxd3]
 gi|158511062|gb|ABW68029.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Desulfococcus
          oleovorans Hxd3]
          Length = 435

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 11/85 (12%)

Query: 17 YPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIV----------IDVNKNQM 66
            Y S    R ++ +  +    ++     +   A+   S ++          +D +   +
Sbjct: 14 VAYHSFSFSRAVRTVAVLATAMVLCTVAFAPAFAERPLSQLLEPGDSVLVQRMD-DGRVV 72

Query: 67 TGFKQDEPRYPASLTKMMTLYIIFE 91
               D    PAS+ K++T    FE
Sbjct: 73 LAENPDTLLVPASILKIVTSLAAFE 97


>gi|258650636|ref|YP_003199792.1| beta-lactamase [Nakamurella multipartita DSM 44233]
 gi|258553861|gb|ACV76803.1| beta-lactamase [Nakamurella multipartita DSM 44233]
          Length = 381

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 9/57 (15%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
            AS TK MT  ++ +  Q  KL L    PVSK  +               T EQ + 
Sbjct: 51  IASNTKTMTAAVVLQLAQEGKLELTD--PVSKYVSGVPG-------GDSITVEQLLK 98


>gi|300930335|ref|ZP_07145747.1| beta-lactamase [Escherichia coli MS 187-1]
 gi|300461795|gb|EFK25288.1| beta-lactamase [Escherichia coli MS 187-1]
          Length = 376

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D     ASLTK+MT  ++ + L    + LN   P+SK A     +++     T  T    
Sbjct: 71  DSVVRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA--PPGARVPTYNGTPITLVNL 126


>gi|242129244|gb|ACS83694.1| Crb3 [uncultured bacterium AOCarb3]
          Length = 299

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 14/149 (9%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           V D                  S+ K      + + +   KL L+ Q+ VSK       S 
Sbjct: 48  VFDFASGLTVLINNAHQFPMQSVFKFPLGMAVLDMVDRGKLKLDQQVYVSKNDLQPTYSP 107

Query: 118 L---YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           L   +       T    +   ++ S N+        + G+      ++++  + +G+++ 
Sbjct: 108 LRDKFPDGNVNVTLADLLTYSVSLSDNNACDILFRLVGGT-----QVVNDYIRGLGIKDM 162

Query: 175 IYKNAS-----GLHDK-NQITTARDQAIL 197
                      G   +    +T      L
Sbjct: 163 AIVATEMQMSKGWDVQFENYSTPEAMLDL 191


>gi|326328918|ref|ZP_08195249.1| beta-lactamase regulatory protein BlaB [Nocardioidaceae bacterium
           Broad-1]
 gi|325953261|gb|EGD45270.1| beta-lactamase regulatory protein BlaB [Nocardioidaceae bacterium
           Broad-1]
          Length = 307

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 1/89 (1%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119
           DV+     G   D P   AS+ K+    ++ + +   ++   T + ++    +  P  L 
Sbjct: 35  DVDTGLEVGIGVDRPMPLASVAKVPLALVVADRIARGEIDGATMVTLAAAERSYGPYGLS 94

Query: 120 LKEKT-YFTTEQGILALITRSANDVSTAF 147
                   +    +L ++  S N  + A 
Sbjct: 95  AFTHDATCSVADLMLMMLGLSDNAAADAL 123


>gi|16589043|gb|AAL26996.1|AF398335_1 class A HERA-3 beta-lactamase [Escherichia hermannii]
          Length = 290

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPK------------YSSI---VIDVNKNQMTGFK 70
           + I  +  I FL++I +   ++    P             ++ I   V++     + G++
Sbjct: 2   KKITPLFAIAFLTLIALLAPAQASVTPDMTDFLRQQEQRLHARIGMAVVNAQGETVFGYR 61

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA--TQNPSKLYLKEKTYFTT 128
           QDE     S  K +    + E LQ     L+ Q+ +   A       +K YL      + 
Sbjct: 62  QDERFPLTSTFKTLACAALLERLQKNGGSLDEQVTIPPDALLDYAPVTKNYLAP-ATISL 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
                A ++ S N        ++ G +   +F   + +   ++
Sbjct: 121 RMLCAAAVSYSDNTAGNRILTYLGGPDAVTQFMRGIGDHVTRL 163


>gi|16418877|gb|AAL19329.1| penicillin- binding protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|261245658|emb|CBG23454.1| penicillin-binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992075|gb|ACY86960.1| beta-lactamase/D-alanine carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301156987|emb|CBW16470.1| penicillin-binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|332987323|gb|AEF06306.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 376

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 36/130 (27%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVID-------VNKNQ------MTGFKQ--------- 71
           +LF + +    A++  A P ++S ++D                  +    Q         
Sbjct: 1   MLFAASLTSVQAAQPIADPVFASDIVDRYAEHIFYGSGATGMALVVIDGNQRVFRSFGDT 60

Query: 72  ----------DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK 121
                     D     ASLTK+MT  ++ + L    + LN   P+SK A     +++   
Sbjct: 61  RPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA--PPGARVPTY 116

Query: 122 EKTYFTTEQG 131
           + T  T    
Sbjct: 117 QGTPITLVNL 126


>gi|333010811|gb|EGK30237.1| penicillin-binding protein ampH [Shigella flexneri K-272]
          Length = 370

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D     ASLTK+MT  ++ + L    + LN   P+SK A     +++     T  T    
Sbjct: 65  DSVVRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA--PPGARVPTYNGTPITLVNL 120


>gi|315616708|gb|EFU97325.1| penicillin-binding protein ampH [Escherichia coli 3431]
          Length = 376

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D     ASLTK+MT  ++ + L    + LN   P+SK A     +++     T  T    
Sbjct: 71  DSVVRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA--PPGARVPTYNGTPITLVNL 126


>gi|300903366|ref|ZP_07121294.1| beta-lactamase [Escherichia coli MS 84-1]
 gi|301301517|ref|ZP_07207652.1| beta-lactamase [Escherichia coli MS 124-1]
 gi|300404661|gb|EFJ88199.1| beta-lactamase [Escherichia coli MS 84-1]
 gi|300843014|gb|EFK70774.1| beta-lactamase [Escherichia coli MS 124-1]
 gi|315256192|gb|EFU36160.1| beta-lactamase [Escherichia coli MS 85-1]
          Length = 376

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D     ASLTK+MT  ++ + L    + LN   P+SK A     +++     T  T    
Sbjct: 71  DSVVRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA--PPGARVPTYNGTPITLVNL 126


>gi|26246375|ref|NP_752414.1| beta-lactam binding protein AmpH [Escherichia coli CFT073]
 gi|91209437|ref|YP_539423.1| beta-lactam binding protein AmpH [Escherichia coli UTI89]
 gi|191173492|ref|ZP_03035019.1| penicillin-binding protein AmpH [Escherichia coli F11]
 gi|215485459|ref|YP_002327890.1| beta-lactam binding protein AmpH [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218557285|ref|YP_002390198.1| beta-lactam binding protein AmpH [Escherichia coli S88]
 gi|237707638|ref|ZP_04538119.1| penicillin-binding protein ampH [Escherichia sp. 3_2_53FAA]
 gi|312964612|ref|ZP_07778863.1| penicillin-binding protein ampH [Escherichia coli 2362-75]
 gi|26106773|gb|AAN78958.1|AE016756_141 Penicillin-binding protein ampH [Escherichia coli CFT073]
 gi|91071011|gb|ABE05892.1| penicillin-binding protein AmpH [Escherichia coli UTI89]
 gi|190906201|gb|EDV65813.1| penicillin-binding protein AmpH [Escherichia coli F11]
 gi|215263531|emb|CAS07860.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli O127:H6
           str. E2348/69]
 gi|218364054|emb|CAR01719.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli S88]
 gi|222032172|emb|CAP74911.1| Penicillin-binding protein ampH [Escherichia coli LF82]
 gi|226898848|gb|EEH85107.1| penicillin-binding protein ampH [Escherichia sp. 3_2_53FAA]
 gi|307628158|gb|ADN72462.1| beta-lactam binding protein AmpH [Escherichia coli UM146]
 gi|312290633|gb|EFR18511.1| penicillin-binding protein ampH [Escherichia coli 2362-75]
 gi|312944953|gb|ADR25780.1| beta-lactam binding protein AmpH [Escherichia coli O83:H1 str. NRG
           857C]
 gi|320197190|gb|EFW71807.1| Penicillin-binding protein AmpH [Escherichia coli WV_060327]
 gi|323953013|gb|EGB48881.1| beta-lactamase [Escherichia coli H252]
 gi|323958566|gb|EGB54269.1| beta-lactamase [Escherichia coli H263]
          Length = 385

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L   +L+ + +    A++   +P+++S                     +VID N
Sbjct: 1   MKRSL-LFSAVLYAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSYGETRPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++     T  T    
Sbjct: 117 -PPGARVPTYNGTPITLVNL 135


>gi|293413626|ref|ZP_06656275.1| beta-lactamase [Escherichia coli B185]
 gi|293418442|ref|ZP_06660877.1| beta-lactamase [Escherichia coli B088]
 gi|300818305|ref|ZP_07098516.1| beta-lactamase [Escherichia coli MS 107-1]
 gi|300820391|ref|ZP_07100543.1| beta-lactamase [Escherichia coli MS 119-7]
 gi|300924089|ref|ZP_07140083.1| beta-lactamase [Escherichia coli MS 182-1]
 gi|300936356|ref|ZP_07151284.1| beta-lactamase [Escherichia coli MS 21-1]
 gi|300947982|ref|ZP_07162127.1| beta-lactamase [Escherichia coli MS 116-1]
 gi|300957929|ref|ZP_07170098.1| beta-lactamase [Escherichia coli MS 175-1]
 gi|301330774|ref|ZP_07223372.1| beta-lactamase [Escherichia coli MS 78-1]
 gi|301647289|ref|ZP_07247105.1| beta-lactamase [Escherichia coli MS 146-1]
 gi|309794904|ref|ZP_07689325.1| beta-lactamase [Escherichia coli MS 145-7]
 gi|1657571|gb|AAB18099.1| hypothetical protein in sbmA 3' region [Escherichia coli str. K-12
           substr. MG1655]
 gi|291324970|gb|EFE64385.1| beta-lactamase [Escherichia coli B088]
 gi|291433684|gb|EFF06657.1| beta-lactamase [Escherichia coli B185]
 gi|300315368|gb|EFJ65152.1| beta-lactamase [Escherichia coli MS 175-1]
 gi|300419685|gb|EFK02996.1| beta-lactamase [Escherichia coli MS 182-1]
 gi|300452481|gb|EFK16101.1| beta-lactamase [Escherichia coli MS 116-1]
 gi|300458462|gb|EFK21955.1| beta-lactamase [Escherichia coli MS 21-1]
 gi|300527176|gb|EFK48245.1| beta-lactamase [Escherichia coli MS 119-7]
 gi|300529196|gb|EFK50258.1| beta-lactamase [Escherichia coli MS 107-1]
 gi|300843287|gb|EFK71047.1| beta-lactamase [Escherichia coli MS 78-1]
 gi|301074553|gb|EFK89359.1| beta-lactamase [Escherichia coli MS 146-1]
 gi|308121557|gb|EFO58819.1| beta-lactamase [Escherichia coli MS 145-7]
 gi|324016629|gb|EGB85848.1| beta-lactamase [Escherichia coli MS 117-3]
          Length = 376

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D     ASLTK+MT  ++ + L    + LN   P+SK A     +++     T  T    
Sbjct: 71  DSVVRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA--PPGARVPTYNGTPITLVNL 126


>gi|312170969|emb|CBX79228.1| Penicillin-binding protein ampH [Erwinia amylovora ATCC BAA-2158]
          Length = 413

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 20/103 (19%)

Query: 44  MASELHAKPKYSS---IVIDVNKNQMTGFKQDEP----RYP--------ASLTKMMTLYI 88
            A  +    K S+   + ID N  ++   +        R P        ASL+K+MT  +
Sbjct: 60  YADNIFYNTKASAMAIVAIDAN-QRVFASRGSVRPGSQRPPEKDSLIRVASLSKLMTSQL 118

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           + +  +  +L L+   P+SK A +   S++   +         
Sbjct: 119 MIKLAEEGRLQLDD--PLSKYAPS--GSRVPSFKGQPIRLINL 157


>gi|218688239|ref|YP_002396451.1| beta-lactam binding protein AmpH [Escherichia coli ED1a]
 gi|218425803|emb|CAR06609.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli ED1a]
          Length = 385

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L   +L+ + +    A++   +P+++S                     +VID N
Sbjct: 1   MKRSL-LFSAVLYAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSYGETRPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++     T  T    
Sbjct: 117 -PPGARVPTYNGTPITLVNL 135


>gi|292486899|ref|YP_003529769.1| Penicillin-binding protein ampH [Erwinia amylovora CFBP1430]
 gi|291552316|emb|CBA19357.1| Penicillin-binding protein ampH [Erwinia amylovora CFBP1430]
          Length = 413

 Score = 45.2 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 20/103 (19%)

Query: 44  MASELHAKPKYSS---IVIDVNKNQMTGFKQDEP----RYP--------ASLTKMMTLYI 88
            A  +    K S+   + ID N  ++   +        R P        ASL+K+MT  +
Sbjct: 60  YADNIFYNTKASAMAIVAIDAN-QRVFASRGSVRPGSQRPPEKDSLIRVASLSKLMTSQL 118

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           + +  +  +L L+   P+SK A +   S++   +         
Sbjct: 119 MIKLAEEGRLQLDD--PLSKYAPS--GSRVPSFKGQPIRLINL 157


>gi|126149283|dbj|BAF47414.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 295

 Score = 45.2 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 9/99 (9%)

Query: 61  VNKN---QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           +N     ++ G +QDE     S  K M +  +     + ++ L+T++P+   A     S 
Sbjct: 54  LNTGNGRRIGGHRQDERFPMCSTFKSMLVAHVLSLADAGRVSLDTRVPI---AGKDLLSY 110

Query: 118 LYLK---EKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             +         T        +T S N  +    E + G
Sbjct: 111 APVARRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGG 149


>gi|58580993|ref|YP_200009.1| beta lactamase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58425587|gb|AAW74624.1| beta lactamase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 313

 Score = 45.2 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 30/90 (33%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ++D       G ++DE     S  K +    + + +   KL L  ++ +  +   ++   
Sbjct: 55  LLDSATGWRLGQREDERFPMCSTFKFVLAAAVLQRVDQGKLTLAQRVKIRASDMLEHAPV 114

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAF 147
                    +  +   A +  S N  +   
Sbjct: 115 TERHVGGSLSVGELCRATMIYSDNPAANVL 144


>gi|20530259|gb|AAM22276.1| beta-lactamase TEM-96 [Escherichia coli]
          Length = 286

 Score = 45.2 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 59/159 (37%), Gaps = 17/159 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIG 170
           A IT S N  +      I G ++   F   M +   ++G
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLG 161


>gi|134133929|gb|ABO61022.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 298

 Score = 45.2 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 28/96 (29%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ++D    +  G +QDE     S  K M         +     L+ ++PV       +   
Sbjct: 57  LLDTASGRRLGHRQDERFPMCSTFKSMLAATALSQAERAPALLDRRVPVRDADLLSHAPV 116

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                    T      A +  S N  +      + G
Sbjct: 117 TRRHAGKDMTVRDLCRATVITSDNTAANLLFGVVGG 152


>gi|317506500|ref|ZP_07964300.1| tat pathway signal sequence [Segniliparus rugosus ATCC BAA-974]
 gi|316255210|gb|EFV14480.1| tat pathway signal sequence [Segniliparus rugosus ATCC BAA-974]
          Length = 297

 Score = 45.2 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 50/164 (30%), Gaps = 49/164 (29%)

Query: 54  YSSIVIDVNKNQMTGF-KQDEPRYPASLTKMM--TLYIIFEYLQSKKLHLNTQIPVSKTA 110
            S ++ D             E  Y AS  K++  T  ++ +  ++ +L L          
Sbjct: 73  VSYVLRDRKTGATYHSQHASELIYTASTIKLLIATDLLVRQ--RAGQLTLT--------- 121

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK----------FAI 160
               P K              +  ++  S ND + +  +  +G              F  
Sbjct: 122 ---GPDK------------DLMHQMLNFSDNDAANSLWDKYNGPGGTTLLRVFQSYGFID 166

Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204
            ++  +           +AS ++  N   TA D   L + + + 
Sbjct: 167 EINQHSP----------SASSMYWGNHKATADDLGRLMLYVLEQ 200


>gi|226314205|ref|YP_002774101.1| beta-lactamase [Brevibacillus brevis NBRC 100599]
 gi|226097155|dbj|BAH45597.1| putative beta-lactamase [Brevibacillus brevis NBRC 100599]
          Length = 331

 Score = 45.2 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 44/126 (34%), Gaps = 14/126 (11%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKM--M-TLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
            + +   +  G   +E    AS  K+  M T+      +++ ++ L+ ++ + K      
Sbjct: 53  AMHLETGETAGHLDEELFQLASAFKIPIMVTMM---REVEAGRIRLDQRVTL-KWEDRVP 108

Query: 115 PSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
            S +   L      T +     +   S N  +    E I G        ++    ++G+ 
Sbjct: 109 GSGILQELDAGAALTVKDLATLMTIVSDNYATDQILELIGG-----IDKVNEHMHELGLS 163

Query: 173 NTIYKN 178
               ++
Sbjct: 164 QIHLRH 169


>gi|27805136|emb|CAD60970.1| class A beta-lactamase [Escherichia hermannii]
          Length = 290

 Score = 45.2 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPK------------YSSI---VIDVNKNQMTGFK 70
           + I  +  I FL++I +   ++    P             ++ I   V++     + G++
Sbjct: 2   KKITPLFAIAFLTLIALLAPAQASVTPDMTDFLRQQEQRLHARIGMAVVNAQGETVFGYR 61

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA--TQNPSKLYLKEKTYFTT 128
           QDE     S  K +    + E LQ     L+ Q+ +   A       +K YL      + 
Sbjct: 62  QDERFPLTSTFKTLACAALLERLQKNGGSLDEQVTIPPDALLDYAPVTKNYLAP-ATISL 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
                A ++ S N        ++ G +   +F   + +   ++
Sbjct: 121 RMLCAAAVSYSDNTAGNRILTYLGGPDAVTQFMRGIGDHVTRL 163


>gi|85706437|ref|ZP_01037531.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Roseovarius sp. 217]
 gi|85669210|gb|EAQ24077.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Roseovarius sp. 217]
          Length = 508

 Score = 44.9 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYL 93
           ++ SE +   +    V D    Q+    +      PAS+TK +T     + L
Sbjct: 62  ALISEANLSGRVGYAVADARTGQVLEASEGTTGLPPASVTKAVTALYALDAL 113


>gi|325284092|ref|YP_004256633.1| beta-lactamase [Deinococcus proteolyticus MRP]
 gi|324315901|gb|ADY27016.1| beta-lactamase, putative [Deinococcus proteolyticus MRP]
          Length = 276

 Score = 44.9 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 49/160 (30%), Gaps = 20/160 (12%)

Query: 57  IVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           ++I     +       E  +PA SL K+  L +  +  Q   + L   +P+   A     
Sbjct: 21  LLIQDEAGRDLCSLNAEAVFPAASLIKLPLLVLGLQAAQRGDVALVECLPL-PAAEHVPG 79

Query: 116 SKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           + +   L      T    +  +I  S N  +    E +          +      +G+ +
Sbjct: 80  AGVLHELDAGLRLTWRDLLTLMIVVSDNTATNMVIERLG------LERVQVALPGLGLTH 133

Query: 174 TIYKNASGLHD----------KNQITTARDQAILGILLRK 203
           T                    +   TT RD   L   LR+
Sbjct: 134 TRLVGKLQQPPQRQNAAQRRGERNQTTPRDMLRLLQNLRQ 173


>gi|29566662|ref|NP_818228.1| gp169 [Mycobacterium phage Bxz1]
 gi|203459023|ref|YP_002224179.1| gp168 [Mycobacterium phage ScottMcG]
 gi|203460669|ref|YP_002224403.1| gp171 [Mycobacterium phage Spud]
 gi|204305807|ref|YP_002224624.1| gp169 [Mycobacterium phage Cali]
 gi|29425387|gb|AAN16811.1| gp169 [Mycobacterium phage Bxz1]
 gi|197312250|gb|ACH62606.1| gp171 [Mycobacterium phage Spud]
 gi|197312470|gb|ACH62825.1| gp168 [Mycobacterium phage ScottMcG]
 gi|197312780|gb|ACH63133.1| gp169 [Mycobacterium phage Cali]
 gi|255928054|gb|ACU41673.1| gp166 [Mycobacterium phage LRRHood]
          Length = 358

 Score = 44.9 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 11/99 (11%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ- 130
           D     AS+TK +T   I   +   K+ L+  +   K  A        +      T +Q 
Sbjct: 57  DAKFRAASVTKTLTAMAILREVDKGKISLDDVV--DKYVAQ-------IPNGRQLTVKQV 107

Query: 131 -GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
             + + +     D+  A       +   F+   + +A +
Sbjct: 108 LMMRSGLAEYQTDIIIALTFLAFPTWPTFSPEGAMQAVR 146


>gi|237730342|ref|ZP_04560823.1| beta-lactamase/D-alanine carboxypeptidase [Citrobacter sp. 30_2]
 gi|226905881|gb|EEH91799.1| beta-lactamase/D-alanine carboxypeptidase [Citrobacter sp. 30_2]
          Length = 375

 Score = 44.9 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D     AS+TK+MT  ++ + L    + LN   P+SK A     +++   + T  T    
Sbjct: 70  DSVIRIASITKLMTSEMLVKLLDQGTVKLND--PLSKYA--PPGARVPTYQGTPITLVNL 125


>gi|315605199|ref|ZP_07880245.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313016|gb|EFU61087.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 446

 Score = 44.9 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 25/134 (18%)

Query: 58  VIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           V+D    Q+    +   P  PAS TK +T +    +L          +  S      + +
Sbjct: 81  VVDAQTGQVLLDAEASTPHTPASTTKTLTAFTALAHLDP-----TATLTTSALLGADSHT 135

Query: 117 -------KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                   L L      T E    A +   A+D ++   +    S              +
Sbjct: 136 LYLDSEGDLLLGIGASETREVPGRAGLQTLADDTASVLAQRGVTSV------------TL 183

Query: 170 GMQNTIYKNASGLH 183
             + T+++ AS L 
Sbjct: 184 DWRGTLFEGASHLS 197


>gi|323127655|gb|ADX24952.1| lipoprotein [Streptococcus dysgalactiae subsp. equisimilis ATCC
           12394]
          Length = 281

 Score = 44.9 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 34/103 (33%), Gaps = 8/103 (7%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKM---MTLYIIFEYLQSKKLHLNTQIPVS--KTAATQN 114
           D+   +     + +P    S  K+   M   ++ + ++  KL L  +  ++       Q 
Sbjct: 46  DLRSGKTVTMNEHQPMTAGSTYKLPLNM---LVVDEVKKGKLTLTERFDITGTDYEYEQE 102

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
            +    +     +        +  S N  + A  E + G  K 
Sbjct: 103 HNAYVAQFSGAMSIPDMQEYSLVYSENTPAYALAERLGGMNKA 145


>gi|301025480|ref|ZP_07189027.1| beta-lactamase [Escherichia coli MS 69-1]
 gi|300395995|gb|EFJ79533.1| beta-lactamase [Escherichia coli MS 69-1]
 gi|324010133|gb|EGB79352.1| beta-lactamase [Escherichia coli MS 57-2]
          Length = 376

 Score = 44.9 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D     ASLTK+MT  ++ + L    + LN   P+SK A     +++     T  T    
Sbjct: 71  DSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA--PPGARVPTYNGTPITLVNL 126


>gi|300900429|ref|ZP_07118599.1| beta-lactamase [Escherichia coli MS 198-1]
 gi|300356075|gb|EFJ71945.1| beta-lactamase [Escherichia coli MS 198-1]
          Length = 376

 Score = 44.9 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D     ASLTK+MT  ++ + L    + LN   P+SK A     +++     T  T    
Sbjct: 71  DSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA--PPGARVPTYNGTPITLVNL 126


>gi|312863459|ref|ZP_07723697.1| conserved hypothetical protein [Streptococcus vestibularis F0396]
 gi|311100995|gb|EFQ59200.1| conserved hypothetical protein [Streptococcus vestibularis F0396]
          Length = 477

 Score = 44.9 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 61/211 (28%), Gaps = 38/211 (18%)

Query: 84  MTL---------YIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGI 132
           MT           ++ + +   KL L  +  ++ T                   T  +  
Sbjct: 259 MTAGSTYKLPLNMLVMDQVNKGKLSLTERFDITNTEYEYQGEHDNYVAAFGGSMTIPEMQ 318

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
              +  S N  + A  E + G EK F  ++    K  G   T       +      TT  
Sbjct: 319 EYSLVYSENTPAYALAERLGGMEK-FYGMLDKYGKSKGEVKT-------IQMHGNKTTTD 370

Query: 193 DQAILGILLRK---NFPQYYKYFSIR-KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
               +   L K   N+     Y        Y    + N    L         K GY R +
Sbjct: 371 YYIQVLDYLWKHQDNYKDILHYIGESFPNEYYKTYLPN----LTIYQ-----KPGYVREA 421

Query: 249 GFNIVTSLRYKDDPIVAVV----MGMPTSQE 275
               V ++  +D P +  +    +G  T + 
Sbjct: 422 LN--VDAIVMEDTPYMVAIYTRYLGGSTEES 450


>gi|251782852|ref|YP_002997155.1| hypothetical protein SDEG_1446 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391482|dbj|BAH81941.1| hypothetical protein SDEG_1446 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 353

 Score = 44.9 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 34/103 (33%), Gaps = 8/103 (7%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKM---MTLYIIFEYLQSKKLHLNTQIPVS--KTAATQN 114
           D+   +     + +P    S  K+   M   ++ + ++  KL L  +  ++       Q 
Sbjct: 118 DLRSGKTVTMNEHQPMTAGSTYKLPLNM---LVVDEVKKGKLTLTERFDITGTDYEYEQE 174

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
            +    +     +        +  S N  + A  E + G  K 
Sbjct: 175 HNAYVAQFSGAMSIPDMQEYSLVYSENTPAYALAERLGGMNKA 217


>gi|237640325|ref|YP_002891180.1| AmpR [Escherichia coli]
 gi|229561544|gb|ACQ77747.1| AmpR [Escherichia coli]
          Length = 278

 Score = 44.9 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 58/154 (37%), Gaps = 17/154 (11%)

Query: 31  MGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPA-S 79
           M + LF +  +   A          +E     +   I +D+N  ++    + E R+P  S
Sbjct: 1   MQQCLFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGILALIT 137
             K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   A IT
Sbjct: 61  TFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCSAAIT 118

Query: 138 RSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            S N  +      I G ++   F   M +   ++
Sbjct: 119 MSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 152


>gi|281177546|dbj|BAI53876.1| penicillin-binding protein [Escherichia coli SE15]
          Length = 385

 Score = 44.9 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D     ASLTK+MT  ++ + L    + LN   P+SK A     +++     T  T    
Sbjct: 80  DSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA--PPGARVPTYNGTPITLVNL 135


>gi|110640637|ref|YP_668365.1| beta-lactam binding protein AmpH [Escherichia coli 536]
 gi|117622639|ref|YP_851552.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli APEC
           O1]
 gi|227884623|ref|ZP_04002428.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli 83972]
 gi|300988129|ref|ZP_07178566.1| beta-lactamase [Escherichia coli MS 45-1]
 gi|300997442|ref|ZP_07181782.1| beta-lactamase [Escherichia coli MS 200-1]
 gi|301049566|ref|ZP_07196520.1| beta-lactamase [Escherichia coli MS 185-1]
 gi|110342229|gb|ABG68466.1| beta-lactamase [Escherichia coli 536]
 gi|115511763|gb|ABI99837.1| penicillin-binding protein AmpH [Escherichia coli APEC O1]
 gi|227838709|gb|EEJ49175.1| beta-lactamase/D-alanine carboxypeptidase [Escherichia coli 83972]
 gi|300298657|gb|EFJ55042.1| beta-lactamase [Escherichia coli MS 185-1]
 gi|300304261|gb|EFJ58781.1| beta-lactamase [Escherichia coli MS 200-1]
 gi|300407543|gb|EFJ91081.1| beta-lactamase [Escherichia coli MS 45-1]
 gi|307552280|gb|ADN45055.1| beta-lactamase/D-ala carboxypeptidase penicilling binding protein
           AmpH [Escherichia coli ABU 83972]
 gi|315289825|gb|EFU49215.1| beta-lactamase [Escherichia coli MS 110-3]
 gi|315294157|gb|EFU53508.1| beta-lactamase [Escherichia coli MS 153-1]
 gi|315299603|gb|EFU58851.1| beta-lactamase [Escherichia coli MS 16-3]
 gi|324010724|gb|EGB79943.1| beta-lactamase [Escherichia coli MS 60-1]
          Length = 376

 Score = 44.9 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D     ASLTK+MT  ++ + L    + LN   P+SK A     +++     T  T    
Sbjct: 71  DSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA--PPGARVPTYNGTPITLVNL 126


>gi|16588422|gb|AAL26797.1|AF311385_1 class A beta-lactamase [Escherichia hermannii]
 gi|27805138|emb|CAD60971.1| class A beta-lactamase [Escherichia hermannii]
          Length = 290

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPK------------YSSI---VIDVNKNQMTGFK 70
           + I  +  I FL++I +   ++    P             ++ I   V++     + G++
Sbjct: 2   KKITPLFVIAFLTLIALLAPAQASVTPDMTDFLRQQEQRLHARIGMAVVNAQGETVFGYR 61

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA--TQNPSKLYLKEKTYFTT 128
           QDE     S  K +    + E LQ     L+ Q+ +   A       +K YL      + 
Sbjct: 62  QDERFPLTSTFKTLACAALLERLQKNGGSLDEQVTIPPDALLDYAPVTKNYLAP-ATISL 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
                A ++ S N        ++ G +   +F   + +   ++
Sbjct: 121 RMLCAAAVSYSDNTAGNRILTYLGGPDAVTQFMRGIGDHVTRL 163


>gi|294494118|gb|ADE92874.1| penicillin-binding protein AmpH [Escherichia coli IHE3034]
          Length = 385

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D     ASLTK+MT  ++ + L    + LN   P+SK A     +++     T  T    
Sbjct: 80  DSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA--PPGARVPTYNGTPITLVNL 135


>gi|269218248|ref|ZP_06162102.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269212376|gb|EEZ78716.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 447

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIF 90
           ++  + S+A+   A    S +V D    +     + D PR PAS  K++T  +  
Sbjct: 66  VTSALGSLAASPEAHGHVSVVVADAASGKTIAQLEPDTPRAPASNMKIVTAAVAL 120


>gi|281416086|ref|YP_003347822.1| gp160 [Mycobacterium phage ET08]
 gi|255927765|gb|ACU41386.1| gp160 [Mycobacterium phage ET08]
          Length = 358

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 11/99 (11%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ- 130
           D     AS+TK +T   I   +   K+ L+  +   K  A        +      T +Q 
Sbjct: 57  DAKFRAASVTKTLTAMAILREVDKGKISLDDVV--DKYVAQ-------IPNGRQLTVKQV 107

Query: 131 -GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
             + + +     D+  A       +   F+   + +A +
Sbjct: 108 LMMRSGLAEYQTDIIIALTFLAFPTWPTFSPEGAMQAVR 146


>gi|109393362|ref|YP_656160.1| gp169 [Mycobacterium phage Catera]
 gi|203457498|ref|YP_002224844.1| gp168 [Mycobacterium phage Rizal]
 gi|91981184|gb|ABE67899.1| gp169 [Mycobacterium phage Catera]
 gi|197312026|gb|ACH62383.1| gp168 [Mycobacterium phage Rizal]
          Length = 358

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 11/99 (11%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ- 130
           D     AS+TK +T   I   +   K+ L+  +   K  A        +      T +Q 
Sbjct: 57  DAKFRAASVTKTLTAMAILREVDKGKISLDDVV--DKYVAQ-------IPNGRQLTVKQV 107

Query: 131 -GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
             + + +     D+  A       +   F+   + +A +
Sbjct: 108 LMMRSGLAEYQTDIIIALTFLAFPTWPTFSPEGAMQAVR 146


>gi|171692625|ref|XP_001911237.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946261|emb|CAP73062.1| unnamed protein product [Podospora anserina S mat+]
          Length = 408

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%)

Query: 63  KNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
             +    + ++  Y AS TK++T     + +    L L++   +S+ A
Sbjct: 46  SGESLPHQLNDIFYLASATKLITTIAALQAIDDGHLSLDSPDTISQFA 93


>gi|292900706|ref|YP_003540075.1| penicillin-binding protein [Erwinia amylovora ATCC 49946]
 gi|291200554|emb|CBJ47683.1| penicillin-binding protein [Erwinia amylovora ATCC 49946]
          Length = 379

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 20/103 (19%)

Query: 44  MASELHAKPKYSS---IVIDVNKNQMTGFKQDEP----RYP--------ASLTKMMTLYI 88
            A  +    K S+   + ID N  ++   +        R P        ASL+K+MT  +
Sbjct: 26  YADNIFYNTKASAMAIVAIDAN-QRVFASRGSVRPGSQRPPEKDSLIRVASLSKLMTSQL 84

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           + +  +  +L L+   P+SK A +   S++   +         
Sbjct: 85  MIKLAEEGRLQLDD--PLSKYAPS--GSRVPSFKGQPIRLINL 123


>gi|226228615|ref|YP_002762721.1| putative beta-lactamase precursor [Gemmatimonas aurantiaca T-27]
 gi|226091806|dbj|BAH40251.1| putative beta-lactamase precursor [Gemmatimonas aurantiaca T-27]
          Length = 304

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 64/171 (37%), Gaps = 28/171 (16%)

Query: 26  RNIQLMGKILFLSIIMISMASELHA-KPKYSSI--VID----------------VNKNQM 66
           R +  +  IL  ++++ +  +   A +P  +S+  VID                +   + 
Sbjct: 2   RLLPALAAILIGALLVSASPASAQAVRPGPTSLRRVIDSLADAHRGVVGYSITNLETGEH 61

Query: 67  TGFKQDEPRYPASLTKMMTLYII-FEYLQSKKLHLNTQIPVSKTAATQNPSKL-YLKEKT 124
              + DE    ASL K+  + +  F+  + K+L L+  I +++        +L +L+   
Sbjct: 62  LERRGDETFTTASLIKV-PVLVALFDLAEQKQLTLDDPIVLTEIDKVGGAGQLQFLRTPL 120

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
                     + T S N  +    + I          +  K + +G+ +T 
Sbjct: 121 TLRLWDVAWLMTTLSDNTATNLVLDRIK------IRRVWQKMEALGLPHTK 165


>gi|27805132|emb|CAD60968.1| class A beta-lactamase [Escherichia hermannii]
          Length = 290

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 60/163 (36%), Gaps = 20/163 (12%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPK------------YSSI---VIDVNKNQMTGFK 70
           + I  +  I FL++I +   ++    P             ++ I   V++     + G++
Sbjct: 2   KKITPLFVIAFLTLIALLAPAQASVTPDMTDFLRQQEQRLHARIGMAVVNAQGETVFGYR 61

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA--TQNPSKLYLKEKTYFTT 128
           QDE     S  K +    + E LQ     L+ Q+ +   A       +K YL      + 
Sbjct: 62  QDERFPLTSTFKTLACAALLERLQKNGGSLDEQVTIPPDALLDYAPVTKNYLAP-ATISL 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
                A ++ S N        +++G +   +F   + +   ++
Sbjct: 121 RMLCAAAVSYSDNTAGNRILTYLAGPDAVTQFMRGIGDHVTRL 163


>gi|213133710|gb|ACJ43254.1| TEM-57 beta-lactamase [Escherichia coli]
          Length = 286

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L+ +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLDRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|319639381|ref|ZP_07994131.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Neisseria mucosa C102]
 gi|317399276|gb|EFV79947.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Neisseria mucosa C102]
          Length = 470

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 7/81 (8%)

Query: 31  MGKILFLSIIMISMASELH-----AKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMM 84
           +  IL +S+++ +  S         + + S  V +++  ++      DE R PAS  K++
Sbjct: 3   LKNILLISLMVAACPSWALDFGRIPENEISVYVQELDSGKVIVEHRADELRNPASTMKLV 62

Query: 85  TLYIIFEYLQSKKLHLNTQIP 105
           T +  F  L        T+  
Sbjct: 63  TAFTAFRML-GGDYRWKTEFK 82


>gi|145223569|ref|YP_001134247.1| peptidoglycan glycosyltransferase [Mycobacterium gilvum PYR-GCK]
 gi|315443916|ref|YP_004076795.1| cell division protein FtsI/penicillin-binding protein 2
           [Mycobacterium sp. Spyr1]
 gi|145216055|gb|ABP45459.1| Peptidoglycan glycosyltransferase [Mycobacterium gilvum PYR-GCK]
 gi|315262219|gb|ADT98960.1| cell division protein FtsI/penicillin-binding protein 2
           [Mycobacterium sp. Spyr1]
          Length = 635

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 47/152 (30%), Gaps = 32/152 (21%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPA----------------------- 78
           + +A +       S++V+D    ++     D    PA                       
Sbjct: 282 VQLAKDASGAKNASAVVLDAKTGEVLAMSNDNTFNPAQDVSRQENRQLGNLPVSSPFEPG 341

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           S+ KM+T   + E     KL    ++     +       +      +         +  +
Sbjct: 342 SVNKMITAAAVIEN----KLTTPDEVLQVPGSINMGGVTVG-DAWEHGVMPYTTTGVFGK 396

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           S+N  +    + +    +KFA ++  +   +G
Sbjct: 397 SSNVGTLMLAQRLG--PEKFAEML--EMFGLG 424


>gi|78485138|ref|YP_391063.1| peptidase S13, D-Ala-D-Ala carboxypeptidase C [Thiomicrospira
          crunogena XCL-2]
 gi|78363424|gb|ABB41389.1| D-Ala-D-Ala carboxypeptidase 3 (S13) [Thiomicrospira crunogena
          XCL-2]
          Length = 415

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 30 LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQ--MTGFKQDEPRYPASLTKMMTLY 87
          L+G  L  +        E  ++   + +++ +N  Q  +      + R PAS TK++T Y
Sbjct: 15 LLGSFLLHAAPASVSLKEALSQLHETGVLM-LNAQQEPVIEKDASKLRVPASTTKLVTAY 73

Query: 88 IIFEY 92
          +  ++
Sbjct: 74 LALKH 78


>gi|225573397|ref|ZP_03782152.1| hypothetical protein RUMHYD_01589 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039242|gb|EEG49488.1| hypothetical protein RUMHYD_01589 [Blautia hydrogenotrophica DSM
           10507]
          Length = 363

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 65/180 (36%), Gaps = 25/180 (13%)

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF-AILMSNKAKKIGMQNTIYKNASG 181
               T    + ++IT S ND +     ++ G +       +++  ++ G  NT       
Sbjct: 187 GGRETVNSALTSMITVSDNDAANNLVTWLGGGDSSVGMAAVNSFCEEHGYTNTHMGRMLL 246

Query: 182 LHD--KNQITTARDQAILGILLRKN-----FPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
             +   +  T+  D   L   +  N     +P+       ++ R         NK+   +
Sbjct: 247 ADNTGDDNYTSVTDCGKLLREIYNNSESLTYPELMYKLLKQQER--------RNKIPAGI 298

Query: 235 HNIDGI----KTG--YTRNSGFNIVTSLRYKDDPIVAVVMGMP-TSQERDQKALELITSF 287
            +IDG     KTG   T  +   I+ S    D   +  +M    T+  + Q  ++ +++ 
Sbjct: 299 PDIDGAQVANKTGELDTVENDAAIIYSAPRND--FILCIMAQNLTNTAQAQANIQALSNA 356


>gi|146260101|gb|ABQ14396.1| beta-lactamase [uncultured soil bacterium]
          Length = 271

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 15/127 (11%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMT---LYI---IFEYLQSKKLHLNTQIP 105
            +   I +D+N  ++    + E R+P     MM+   + +   +   + + +  L  +I 
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFP-----MMSTFRVLLCGAVLSRIDAGQEQLGRRIH 86

Query: 106 VSKTAATQNPSKLYLK-EKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILM 162
            S+       S +  K      T  +   A IT S N  +      I G ++   F   M
Sbjct: 87  YSQNDL-VEYSPVTEKHPTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNM 145

Query: 163 SNKAKKI 169
            +   ++
Sbjct: 146 GDHVTRL 152


>gi|194432647|ref|ZP_03064933.1| penicillin-binding protein AmpH [Shigella dysenteriae 1012]
 gi|194419208|gb|EDX35291.1| penicillin-binding protein AmpH [Shigella dysenteriae 1012]
 gi|332085897|gb|EGI91061.1| penicillin-binding protein ampH [Shigella dysenteriae 155-74]
          Length = 385

 Score = 44.5 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSS---------------------IVIDVN 62
           ++R++ L   +L  + +    A++   +P+++S                     +VID N
Sbjct: 1   MKRSL-LFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGN 59

Query: 63  K------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +       +           D     ASLTK+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSYGETRPGNNVRPQMDSVVRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++     T  T    
Sbjct: 117 -PPSARVPTYNGTPITLVNL 135


>gi|1836181|gb|AAB46928.1| penicillin-binding protein, PBP=49 kda essential membrane-bound
          cell-wall synthesizing enzyme {N-terminal}
          [Mycobacterium smegmatis, Peptide Partial, 39 aa]
          Length = 39

 Score = 44.5 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 55 SSIVIDVNKNQMTGFKQDEPRY-PASLTKM 83
          ++I++D    ++   K  +     AS+TKM
Sbjct: 10 AAILVDAETGKILYQKNADKVLGIASMTKM 39


>gi|146743440|gb|ABQ43167.1| AmpR [Yeast expression vector pNIA-Ca]
 gi|146743444|gb|ABQ43170.1| AmpR [Yeast expression vector pNIA-Cb]
 gi|146743446|gb|ABQ43171.1| AmpR [Yeast expression vector pNIA-Cc]
          Length = 286

 Score = 44.5 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+         ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEASPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|295102133|emb|CBK99678.1| Beta-lactamase class A [Faecalibacterium prausnitzii L2-6]
          Length = 282

 Score = 44.5 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 56/168 (33%), Gaps = 19/168 (11%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYII----FEYLQSKKLH 99
           +A+EL++     S+ +D           DE    AS  K    YI+     +     K  
Sbjct: 11  IAAELYSYQGKMSVFVDDLHGHTVEIGADEEFETASTIK---AYILAALYLQA-SRGKAS 66

Query: 100 LNTQIPVSKTAATQNPSKL--YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           L  +I         + S +   L        +     +I  S N  +    +++      
Sbjct: 67  LEEKITYKPEHF-VDGSGMLRALGVGASLKVKDAATMMIICSDNIATNMVIDYLG----- 120

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLH--DKNQITTARDQAILGILLRK 203
               ++   +++G  +T+  N       +    TT RD A L   + K
Sbjct: 121 -LDTINACIREMGFAHTVLHNPLHFDIYNDLGTTTPRDYASLFAQVAK 167


>gi|325673806|ref|ZP_08153496.1| beta lactamase [Rhodococcus equi ATCC 33707]
 gi|325555071|gb|EGD24743.1| beta lactamase [Rhodococcus equi ATCC 33707]
          Length = 297

 Score = 44.5 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 11/116 (9%)

Query: 71  QDEPRYPASLTKMMTLYIIF-EYLQSKKLHLNTQIPVSKTAATQNPSKL-YLKEKTYFTT 128
            D+P   AS+ K+  L++ F   + +  L    Q+ +  +  T  P+ +  + +    + 
Sbjct: 38  ADDPVVTASVYKL-PLFVAFCRLVDAGDLDPREQVTLDPSTRTTGPTGVSQMSDPVRMSL 96

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
                +++  S N  +      +          ++   + +G+ +T      G  D
Sbjct: 97  RDMARSMMAMSDNAAADELLRRVG------VDRVNETMRSLGLSSTRIVG--GTSD 144


>gi|146260232|gb|ABQ14441.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 44.5 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 17/128 (13%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTL---YI---IFEYLQSKKLHLNTQIP 105
            +   I +D+N  ++    + E R+P     MM+     +   +   + + +  L  +I 
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFP-----MMSAFKVLLCGAVLSRIDAGQEQLGRRIH 86

Query: 106 VSKTAATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAIL 161
            S+    +    ++ +L +    T  +   A IT S N  +      I G ++   F   
Sbjct: 87  YSQNDLVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHN 144

Query: 162 MSNKAKKI 169
           M +   ++
Sbjct: 145 MGDHVTRL 152


>gi|322388489|ref|ZP_08062092.1| beta-lactamase [Streptococcus infantis ATCC 700779]
 gi|321140802|gb|EFX36304.1| beta-lactamase [Streptococcus infantis ATCC 700779]
          Length = 422

 Score = 44.5 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 9/117 (7%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
           ++  +  G  +++  Y AS+ K+  LY + E +      L+T++           S    
Sbjct: 207 LSTGKEAGINENQKMYAASVMKLPYLYSVQEKINQGDYQLDTKLKYVSEVNDFPGSYKPE 266

Query: 121 KEKT--------YFTTEQGILALITRSANDVSTAFGEFISG-SEKKFAILMSNKAKK 168
              +         +T +  I      S N        +I+  S++ F   M+  A +
Sbjct: 267 GSGSLPKTADNKEYTIKDLITKTAKESDNVAHNILAYYITNKSDEAFKKEMATIAGE 323


>gi|312131162|ref|YP_003998502.1| peptidase s13 d-ala-d-ala carboxypeptidase c [Leadbetterella
          byssophila DSM 17132]
 gi|311907708|gb|ADQ18149.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Leadbetterella
          byssophila DSM 17132]
          Length = 404

 Score = 44.5 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 51 KPKYSSIVI-DVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQS 95
          K  +S ++I +    ++   K    P  PAS TK++++Y   E L  
Sbjct: 28 KHAFSGVLIKEGKSGKVLFAKNAHKPFVPASNTKILSMYAALEMLPD 74


>gi|89072562|ref|ZP_01159134.1| hypothetical
          D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-
          endopeptidase [Photobacterium sp. SKA34]
 gi|89051666|gb|EAR57119.1| hypothetical
          D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-
          endopeptidase [Photobacterium sp. SKA34]
          Length = 467

 Score = 44.5 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 13/70 (18%)

Query: 31 MGKILFLSIIMISMASELHAKPKYSSI------------VIDVNKNQMTGFK-QDEPRYP 77
          M K LF S ++ +  S   A     +I            V++   N++   K  DE + P
Sbjct: 1  MFKKLFCSALIATSFSSFAAFSPQQAIEHLPKGSDVAFLVVNPATNKIIYSKRADELQAP 60

Query: 78 ASLTKMMTLY 87
          AS  KM+T  
Sbjct: 61 ASTQKMITAL 70


>gi|256028177|ref|ZP_05442011.1| Beta-lactamase [Fusobacterium sp. D11]
 gi|289766110|ref|ZP_06525488.1| beta-lactamase [Fusobacterium sp. D11]
 gi|289717665|gb|EFD81677.1| beta-lactamase [Fusobacterium sp. D11]
          Length = 261

 Score = 44.5 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 53/145 (36%), Gaps = 24/145 (16%)

Query: 72  DEPRYPASLTKMMTLYII--FEYLQSKKLHLNTQIPVSKTAATQNPSKLY--LKEKTYFT 127
           ++    AS+ K++   +    + +   K  L+  I V++ A       +   L  + +FT
Sbjct: 40  NKKVLSASMIKLL--ILAELVKKVSENKFSLSDAITVTE-AMKTGGDGVLKELNSEHHFT 96

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY--------KNA 179
            ++    +I  S N  +    +F+          ++   K++ ++ T             
Sbjct: 97  LKELATLMIIVSDNQATNILIDFLG------MENINQLGKELRLKETFLGRKMMDIEARK 150

Query: 180 SGLHDKNQITTARDQAILGILLRKN 204
           +G       T A D + L  L+ + 
Sbjct: 151 NGYD---NYTCADDISSLLKLIYQE 172


>gi|320333000|ref|YP_004169711.1| beta-lactamase [Deinococcus maricopensis DSM 21211]
 gi|319754289|gb|ADV66046.1| beta-lactamase [Deinococcus maricopensis DSM 21211]
          Length = 335

 Score = 44.5 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           M   A   H     S  V D+   +             S+TK MT  +  +   + +L L
Sbjct: 21  MAVAAQVGHDTQHLSYGVADLETGR--AMDAATTFPIGSITKTMTATLALQLRDAGQLDL 78

Query: 101 NTQI 104
           +  +
Sbjct: 79  DALV 82


>gi|227824703|ref|ZP_03989535.1| predicted protein [Acidaminococcus sp. D21]
 gi|226905202|gb|EEH91120.1| predicted protein [Acidaminococcus sp. D21]
          Length = 331

 Score = 44.5 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 42/132 (31%), Gaps = 21/132 (15%)

Query: 87  YII---FEYLQSKKLHLNTQIPVSKTAA-TQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           Y+     + ++   L L+  + V+  A   ++P+   +K  +       +  ++      
Sbjct: 110 YVAAALLDAVKEGNLSLDETVTVTAKALRKKSPALSKIKPGSKVPVRILLEDMMLDQDET 169

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA----SGLHDKN-------QITTA 191
                  FI   E      ++    + G  +TI  +     +    ++         T+ 
Sbjct: 170 ALYELVRFIGWDE------INAYLLRKGYADTILGSPDLVKTEETAEDKEKSETISYTSV 223

Query: 192 RDQAILGILLRK 203
            D   L   L +
Sbjct: 224 NDMVTLLTRLYE 235


>gi|326801908|ref|YP_004319727.1| beta-lactamase [Sphingobacterium sp. 21]
 gi|326552672|gb|ADZ81057.1| beta-lactamase [Sphingobacterium sp. 21]
          Length = 812

 Score = 44.5 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 24/162 (14%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYII--FEYLQSKKLHLNTQIPV----------S 107
           D++ N    + + +  + AS  K  T  +   F  ++  KL L+  + V          S
Sbjct: 561 DLSDNDTFFYNEHQLFHAASTMK--TPVLAETFRQIERGKLALSDSVEVYNEFKSIYDGS 618

Query: 108 KTAAT-QNPSKLYLKE--KTYFTTEQGILALITRSANDVS-TAFGEFISGSEKKFAILMS 163
             A   ++ S+  L        T    +L +IT+S+N  +        + +  K    + 
Sbjct: 619 SYAIDARDDSEQGLYSLIGKKATLADLLLRMITQSSNLATNIVIDLVGAKNVMKTMERLG 678

Query: 164 NKAKKI--GMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
            K  KI  G++++    A G+   N + +A D ++L + L +
Sbjct: 679 AKEMKILRGVEDSK-AFAHGM---NNMVSAYDLSLLFVQLAR 716


>gi|94313361|ref|YP_586570.1| beta-lactamase class A-like protein [Cupriavidus metallidurans
           CH34]
 gi|93357213|gb|ABF11301.1| Beta-lactamase class A-like protein [Cupriavidus metallidurans
           CH34]
          Length = 293

 Score = 44.5 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 62/176 (35%), Gaps = 24/176 (13%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKL 98
            +  + +   A+   S  + D    ++   ++ E   P AS+ K+  L+ + E +    L
Sbjct: 25  ALAPLLAGTQARVAISLRLAD---GKVVLEREAERVQPSASIIKLPILFTLLEQVAQGHL 81

Query: 99  HLNTQIPVSKTAATQNPSKL--YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
            L  +  +         + +   L      T  + +  +I  S N  + A  E +     
Sbjct: 82  QLEQRFSL-DGLERVGGTGILSQLPSVQSLTLAELVRLMIVLSDNLATNALIELLG---- 136

Query: 157 KFAILMSNKAKKIGMQNTIY--------KNASGLHDKNQITTARDQAILGILLRKN 204
            F   +++   + G+  T            A+GL      T+A D A     L ++
Sbjct: 137 -F-EGVNDWCDRAGLGQTRLQRRMMDAAARAAGLD---NFTSASDAAAPLCWLLRD 187


>gi|322517049|ref|ZP_08069935.1| peptidase family S11 [Streptococcus vestibularis ATCC 49124]
 gi|322124381|gb|EFX95886.1| peptidase family S11 [Streptococcus vestibularis ATCC 49124]
          Length = 462

 Score = 44.5 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 61/211 (28%), Gaps = 38/211 (18%)

Query: 84  MTL---------YIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGI 132
           MT           ++ + +   KL L  +  ++ T                   T  +  
Sbjct: 244 MTAGSTYKLPLNMLVMDQVNKGKLSLTERFDITNTEYEYQGEHDNYVAAFGGSMTIPEMQ 303

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
              +  S N  + A  E + G EK F  ++    K  G   T       +      TT  
Sbjct: 304 EYSLVYSENTPAYALAERLGGMEK-FYGMLDKYGKSKGEVKT-------IQMHGNKTTTD 355

Query: 193 DQAILGILLRK---NFPQYYKYFSIR-KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
               +   L K   N+     Y        Y    + N    L         K GY R +
Sbjct: 356 YYIQVLDYLWKHQDNYKDILHYIGESFPNEYYKTYLPN----LTIYQ-----KPGYVREA 406

Query: 249 GFNIVTSLRYKDDPIVAVV----MGMPTSQE 275
               V ++  +D P +  +    +G  T + 
Sbjct: 407 LN--VDAIVMEDTPYMVAIYTRYLGGSTEES 435


>gi|268607997|ref|ZP_06141728.1| hypothetical protein RflaF_00675 [Ruminococcus flavefaciens FD-1]
          Length = 68

 Score = 44.5 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI---TRSA 140
           M+L +I E ++  K   +  +  S +      + ++L+     T ++ + ++I       
Sbjct: 1   MSLLLIAEDIEMGKYSTSDVLTASDSVKGTKGAVVWLEPGDSMTVDELLKSVIRWKCERC 60

Query: 141 NDVS 144
           +D +
Sbjct: 61  SDCA 64


>gi|126650730|ref|ZP_01722946.1| Beta-lactamase [Bacillus sp. B14905]
 gi|126592395|gb|EAZ86413.1| Beta-lactamase [Bacillus sp. B14905]
          Length = 261

 Score = 44.5 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 63/154 (40%), Gaps = 14/154 (9%)

Query: 58  VIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           V D   +Q     Q +E    AS+ K+  L  +  Y     + L++ + ++ T    + S
Sbjct: 20  VKDPKTDQFLFSHQLEESFSSASIIKVPILLAVLAYTGKHNISLHSALTITPTDW-VDFS 78

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT-- 174
            +  +  T  T  + ++ +I  S N  +    + +          +++  ++IG+Q T  
Sbjct: 79  VISEQRLTQSTVYELLVWMIITSDNTATNVLIDVVGMG------FLNDYFRQIGLQETSL 132

Query: 175 --IYKNASGLHDK-NQITTARDQAIL-GILLRKN 204
                +   L    +  T+A+D A L   + +K+
Sbjct: 133 QRKMMDVERLAMGIDNFTSAQDMAHLFTRIYQKD 166


>gi|294630624|ref|ZP_06709184.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14]
 gi|292833957|gb|EFF92306.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14]
          Length = 467

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
           ++  +  +     ++S+ V+D    +    +   +   PAS+TK+ T       L
Sbjct: 87  VLDPLLGDAALGARHSAAVVDAATGRTLYEQDGGQAFTPASVTKIATAVAALSAL 141


>gi|167630551|ref|YP_001681050.1| beta-lactamase protein [Heliobacterium modesticaldum Ice1]
 gi|167593291|gb|ABZ85039.1| beta-lactamase protein [Heliobacterium modesticaldum Ice1]
          Length = 332

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 52/151 (34%), Gaps = 24/151 (15%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKM---MTLY-IIFEYLQSKKLHLNTQIPV-- 106
            Y+  + D+        + D+    AS  K+   + LY +  +    K+L L+  + +  
Sbjct: 79  DYALFLEDLENGNQFAIEPDKNFQAASAIKVPLVLFLYALALD----KRLDLDETMTLTS 134

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK-FAILMSNK 165
           S  A +      YL     +T  Q    +I  S N  +      +  S    F  L   +
Sbjct: 135 SDLAPSSGGLWSYL-PGRQYTLRQLAKHVIEDSDNTAANMLMRRVGRSNFYLFLRLAGAR 193

Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAI 196
                         +G   K  +T ARD A+
Sbjct: 194 -----------TVPAG-PGKGNVTCARDMAL 212


>gi|300934616|ref|ZP_07149872.1| putative penicillin-binding protein 4 [Corynebacterium resistens
           DSM 45100]
          Length = 470

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTL 86
            ++ A++  A  K S+ V DV   ++      + P  PAS TK++T 
Sbjct: 93  AVAKAAKDPALGKLSAAVTDVRTGKILWSADPKRPLVPASSTKVLTA 139


>gi|269928654|ref|YP_003320975.1| Beta-lactamase class A-like protein [Sphaerobacter thermophilus DSM
           20745]
 gi|269788011|gb|ACZ40153.1| Beta-lactamase class A-like protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 309

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 7/100 (7%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYII--FEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           +   +  G   +     AS+ K  T  ++        + L L  ++ ++ +      S +
Sbjct: 32  LTTGEELGINAECVLPTASVIK--TAVLVELMRQAHEEGLDLQERMTMTASDI-VGGSGV 88

Query: 119 Y--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
              L      T     + +I  S N  +    + + G E 
Sbjct: 89  LKELGPGLQPTVADVAMLMIIVSDNTATNMLIDRVGGVEA 128


>gi|205351688|ref|YP_002225489.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207855857|ref|YP_002242508.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|205271469|emb|CAR36286.1| penicillin-binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|206707660|emb|CAR31944.1| penicillin-binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 376

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 36/130 (27%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVID-------VNKNQ------MTGFKQ--------- 71
           +LF + +    A++  A P ++S ++D                  +    Q         
Sbjct: 1   MLFAASLTSVQAAQPIADPVFASDIVDRYAEHIFYGSGATGMALVVIDGNQRVFRSFGDT 60

Query: 72  ----------DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK 121
                     D     ASLTK+MT  ++ + L    + LN   P+SK A     + +   
Sbjct: 61  RPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA--PPGAHVPTY 116

Query: 122 EKTYFTTEQG 131
           + T  T    
Sbjct: 117 QGTPITLVNL 126


>gi|322392416|ref|ZP_08065876.1| beta-lactamase [Streptococcus peroris ATCC 700780]
 gi|321144408|gb|EFX39809.1| beta-lactamase [Streptococcus peroris ATCC 700780]
          Length = 422

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 40/115 (34%), Gaps = 9/115 (7%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
           ++  +  G  +++  Y AS+ K+  LY + E +      L+T++           S    
Sbjct: 207 LSTGKEAGINEEQKMYAASVMKLPYLYYVQEKINQGDYQLDTKLKYVPEVNDFPGSYKPE 266

Query: 121 KEKT--------YFTTEQGILALITRSANDVSTAFGEFISG-SEKKFAILMSNKA 166
              +         +T +  I      S N        +++  S+  F   M+  A
Sbjct: 267 GSGSLPKTADNKEYTIKDLITKTAKESDNVAHNILAYYVTNKSDDAFKKEMTTIA 321


>gi|296393501|ref|YP_003658385.1| peptidoglycan glycosyltransferase [Segniliparus rotundus DSM 44985]
 gi|296180648|gb|ADG97554.1| Peptidoglycan glycosyltransferase [Segniliparus rotundus DSM 44985]
          Length = 626

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 42/137 (30%), Gaps = 34/137 (24%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPRYPA-----------------------SLTKMMTLYIIF 90
            S++V+D    ++     D    PA                       S+ K++T   + 
Sbjct: 282 VSAVVLDAKTGEVLAMANDSTFNPALGLGNANPDSLGNLAVSSPFEPGSVNKVITASGVI 341

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKL--YLKEKTYFTTEQGILALITRSANDVSTAFG 148
           EY        +  IPV         + +  +L      T       +   S+N  +    
Sbjct: 342 EY---GLSTPDEVIPV-PGLLQMGGATIHDFLGHG---TLHYTTTGIFGFSSNIGTLMLA 394

Query: 149 EFISGSEKKFAILMSNK 165
           + +   E +F  L++  
Sbjct: 395 QRLG--EDRFMDLVNKF 409


>gi|296536518|ref|ZP_06898607.1| beta-lactamase [Roseomonas cervicalis ATCC 49957]
 gi|296263154|gb|EFH09690.1| beta-lactamase [Roseomonas cervicalis ATCC 49957]
          Length = 296

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 43/148 (29%), Gaps = 6/148 (4%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPS 116
           ++D       G +  E    AS  K++    +   +   K  L+  I  ++       P 
Sbjct: 54  LLDTGSGFRAGHRAAERFPMASTFKLLLAGAVLRRVDEGKERLDRVIRFTRDDLVPYAPV 113

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNT 174
                     T      A +T S N  +    + + G      F   + +   ++    T
Sbjct: 114 TGPAAGGPGLTVAALCEATVTLSDNPAANLLLDTVGGPAGLTAFLRGLGDATTRL--DRT 171

Query: 175 IYKNASGLH-DKNQITTARDQAILGILL 201
                 G   D    TT    A L   L
Sbjct: 172 EPALNEGRPGDPRDTTTPDSMAFLIRAL 199


>gi|121596225|ref|YP_988121.1| D-alanyl-D-alanine carboxypeptidase PBP3 [Acidovorax sp. JS42]
 gi|120608305|gb|ABM44045.1| D-Ala-D-Ala carboxypeptidase PBP3 [Acidovorax sp. JS42]
          Length = 493

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 7/75 (9%)

Query: 51  KPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +   S++V++V   Q     + D P  PAS+ K++T Y   + L       +T + +   
Sbjct: 64  REALSALVVEVEGRQPRLAHRADAPANPASVMKLVTTYAALDLLGPA-FTWDTHVYLD-- 120

Query: 110 AATQNPS---KLYLK 121
           AA Q  S    +Y+K
Sbjct: 121 AAPQGGSLRGNVYIK 135


>gi|126437702|ref|YP_001073393.1| putative lipoprotein LpqF [Mycobacterium sp. JLS]
 gi|126237502|gb|ABO00903.1| putative conserved lipoprotein LpqF [Mycobacterium sp. JLS]
          Length = 443

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-YLKEKTYFTTEQGILALI 136
           AS+ K+  L  + E ++   +  + ++ +++ A     + L  L      +       +I
Sbjct: 183 ASIFKLYVLLAVAEAVKVGSVEWDDELTITERAKAVGSAGLEELPPGATVSVRAAAQQMI 242

Query: 137 TRSANDVSTAF 147
           + S N  +   
Sbjct: 243 SSSDNMATDLL 253


>gi|259416425|ref|ZP_05740345.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Silicibacter sp. TrichCH4B]
 gi|259347864|gb|EEW59641.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Silicibacter sp. TrichCH4B]
          Length = 497

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 53  KYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSK 96
           + + +V D    Q     + D    PAS+ K++T     + L + 
Sbjct: 61  ESACVVADARTGQTLESARGDAALPPASVAKVLTALYALDSLGAG 105


>gi|27805140|emb|CAD60972.1| class A beta-lactamase [Escherichia hermannii]
          Length = 290

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 18/148 (12%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPK------------YSSI---VIDVNKNQMTGFK 70
           + I  +  I FL++I +   ++    P             ++ I   V++     + G++
Sbjct: 2   KKITPLFAIAFLTLIALLAPAQASVTPDMTDFLRQQEQRLHARIGMAVVNAQGETVFGYR 61

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA--TQNPSKLYLKEKTYFTT 128
           QDE     S  K +    + E LQ     L+ Q+ +   A       +K YL      + 
Sbjct: 62  QDERFPLTSTFKTLACAALLERLQKNGGSLDEQVTIPPDALLDYAPVTKNYLAP-ATISL 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK 156
                A ++ S N        ++ G + 
Sbjct: 121 RMLCAAAVSYSDNTAGNRILTYLGGPDA 148


>gi|332664026|ref|YP_004446814.1| membrane alanyl aminopeptidase [Haliscomenobacter hydrossis DSM 1100]
 gi|332332840|gb|AEE49941.1| Membrane alanyl aminopeptidase [Haliscomenobacter hydrossis DSM 1100]
          Length = 1140

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 32/149 (21%)

Query: 75   RYPASLTKMMT-LYI-IFEYLQSKKLHLNTQIPVSKTAAT-QNPSKLYLKEKT------- 124
             +PAS  K  T + + +F+     K  L+  I +     +  + S   L E         
Sbjct: 907  IHPASTMK--TPVLVEVFKQANQGKFKLSDSIVLKNEFKSIVDGSPYSLSEGDDSDLPWY 964

Query: 125  -----YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
                   +      A+I RS+N  +    E +       A   +   + +G+Q+ + +  
Sbjct: 965  QRMGQKVSIYDLARAMIVRSSNLATNMLIELVG------AENTTQTMRDLGLQDIMVRR- 1017

Query: 180  SGLHDK-------NQITTARDQAILGILL 201
             G+ D        N   TA D  +L   +
Sbjct: 1018 -GVEDSKAYAAGLNNSATAYDLMLLMERI 1045


>gi|320084647|emb|CBY94438.1| Penicillin-binding protein ampH [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 376

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 36/130 (27%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVID-------VNKNQ------MTGFKQ--------- 71
           +LF + +    A++  A P ++S ++D                  +    Q         
Sbjct: 1   MLFAASLTSVQAAQPIADPVFASDIVDRYAEHIFYGSGATGMALVVIDGNQRVFRSFGDT 60

Query: 72  ----------DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK 121
                     D     ASLTK+MT  ++ + L    + LN   P+SK A     + +   
Sbjct: 61  RPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA--PPGAHVPTY 116

Query: 122 EKTYFTTEQG 131
           + T  T    
Sbjct: 117 QGTPITLVNL 126


>gi|302654566|ref|XP_003019087.1| hypothetical protein TRV_06912 [Trichophyton verrucosum HKI 0517]
 gi|291182784|gb|EFE38442.1| hypothetical protein TRV_06912 [Trichophyton verrucosum HKI 0517]
          Length = 2960

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 18/34 (52%)

Query: 72   DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
            D   + AS+TK+MT   +   ++  ++ L+  + 
Sbjct: 2621 DSVYWMASMTKLMTAIAVMLCVERGQISLDEDVT 2654


>gi|119870866|ref|YP_940818.1| putative lipoprotein LpqF [Mycobacterium sp. KMS]
 gi|119696955|gb|ABL94028.1| putative conserved lipoprotein LpqF [Mycobacterium sp. KMS]
          Length = 443

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-YLKEKTYFTTEQGILALI 136
           AS+ K+  L  + E ++   +  + ++ +++ A     + L  L      +       +I
Sbjct: 183 ASIFKLYVLLAVAEAVKVGSVEWDDELTITERAKAVGSAGLEELPPGATVSVRAAAQQMI 242

Query: 137 TRSANDVSTAF 147
           + S N  +   
Sbjct: 243 SSSDNMATDLL 253


>gi|258654658|ref|YP_003203814.1| beta-lactamase [Nakamurella multipartita DSM 44233]
 gi|258557883|gb|ACV80825.1| beta-lactamase [Nakamurella multipartita DSM 44233]
          Length = 740

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 9/55 (16%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
            AS TK MT  +I +  Q  KL L+   PVS   A               T  Q 
Sbjct: 119 IASNTKTMTSAVILQLAQEGKLRLDD--PVSAYVAGVPG-------GDTITVAQL 164


>gi|55820112|ref|YP_138554.1| hypothetical protein stu0009 [Streptococcus thermophilus LMG 18311]
 gi|55822002|ref|YP_140443.1| hypothetical protein str0009 [Streptococcus thermophilus CNRZ1066]
 gi|55736097|gb|AAV59739.1| conserved hypothetical protein [Streptococcus thermophilus LMG
           18311]
 gi|55737987|gb|AAV61628.1| conserved hypothetical protein [Streptococcus thermophilus
           CNRZ1066]
          Length = 430

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 61/174 (35%), Gaps = 20/174 (11%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHL------NTQIPVSKTAATQN 114
           ++ +++     ++  Y AS+ K+  LY   E L  KKL L       + +     A   +
Sbjct: 215 LDTDRVAAINDEKSMYAASIAKLGVLYYAQERLSQKKLSLSNEYQYTSTVNGFPGAYDPD 274

Query: 115 PSK--LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
            S     + +   ++ E  + A+   S N  +   G +++           +KA      
Sbjct: 275 GSGKISKMTDDKNYSLENLLKAVAQNSDNVATNILGYYVANQYDNSFQKSVDKA------ 328

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
                +A+  +   +  TAR    L   + +       Y S   +    RI  N
Sbjct: 329 -----SATSWNMDKKELTARAAGTLMEAIYRQNGDIINYLSSTDYD-GERISKN 376


>gi|116626983|ref|YP_819602.1| hypothetical protein STER_0011 [Streptococcus thermophilus LMD-9]
 gi|116100260|gb|ABJ65406.1| Beta-lactamase class A [Streptococcus thermophilus LMD-9]
          Length = 430

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 61/174 (35%), Gaps = 20/174 (11%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHL------NTQIPVSKTAATQN 114
           ++ +++     ++  Y AS+ K+  LY   E L  KKL L       + +     A   +
Sbjct: 215 LDTDRVAAINDEKSMYAASIAKLGVLYYAQERLSQKKLSLSNEYQYTSTVNGFPGAYDPD 274

Query: 115 PSK--LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
            S     + +   ++ E  + A+   S N  +   G +++           +KA      
Sbjct: 275 GSGKISKMTDDKNYSLENLLKAVAQNSDNVATNILGYYVANQYDNSFQKSVDKA------ 328

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
                +A+  +   +  TAR    L   + +       Y S   +    RI  N
Sbjct: 329 -----SATSWNMDKKELTARAAGTLMEAIYRQNGDIINYLSSTDYD-GERISKN 376


>gi|149202021|ref|ZP_01878995.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Roseovarius sp. TM1035]
 gi|149145069|gb|EDM33098.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Roseovarius sp. TM1035]
          Length = 499

 Score = 44.1 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYL 93
           ++ S+ +   +    V D    Q+           PAS+TK +T     + L
Sbjct: 53  ALISQANLSGRVGYAVADARTGQLLESGDATTGLPPASVTKAVTALYALDAL 104


>gi|72163302|ref|YP_290959.1| peptidase S13, D-Ala-D-Ala carboxypeptidase C [Thermobifida fusca
           YX]
 gi|71917034|gb|AAZ56936.1| peptidase S13, D-Ala-D-Ala carboxypeptidase C [Thermobifida fusca
           YX]
          Length = 464

 Score = 44.1 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 55  SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIF 90
           S+ VID   +Q    +  DE   PAS TK++T     
Sbjct: 82  SAYVIDAETHQELYARDADEGLVPASTTKVVTSVAAL 118


>gi|37778094|gb|AAR02606.1| beta lactamase [Expression vector pYES260]
 gi|37778096|gb|AAR02607.1| beta lactamase [Expression vector pYES263]
          Length = 207

 Score = 44.1 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCDTLLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|134154077|gb|ABO64442.1| TEM beta-lactamase [Acinetobacter haemolyticus]
          Length = 286

 Score = 44.1 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPKTLVKVKDAENQLGARVGYIELDLNSGKILESFRPEKRF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S++   +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQSDVVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|108801715|ref|YP_641912.1| putative lipoprotein LpqF [Mycobacterium sp. MCS]
 gi|108772134|gb|ABG10856.1| putative conserved lipoprotein LpqF [Mycobacterium sp. MCS]
          Length = 443

 Score = 44.1 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-YLKEKTYFTTEQGILALI 136
           AS+ K+  L  + E ++   +  + ++ +++ A     + L  L      +       +I
Sbjct: 183 ASIFKLYVLLAVAEAVKVGSVEWDDELTITERAKAVGSAGLEELPPGATVSVRAAAQQMI 242

Query: 137 TRSANDVSTAF 147
           + S N  +   
Sbjct: 243 SSSDNMATDLL 253


>gi|37575117|gb|AAQ93491.1| class A beta-lactamase TEM-124 [Morganella morganii]
          Length = 285

 Score = 44.1 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 60/159 (37%), Gaps = 17/159 (10%)

Query: 26  RNIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPR 75
           ++ ++     F +  +   A          +E     +   I +D+N  ++    + E R
Sbjct: 4   KHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEER 63

Query: 76  YPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGI 132
           +P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +  
Sbjct: 64  FPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELC 121

Query: 133 LALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            A IT S N  +      I G ++   F   M +   ++
Sbjct: 122 SAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|84570489|dbj|BAE72674.1| ampicillin resistant protein [Cloning vector pSU0]
 gi|154936855|dbj|BAF75372.1| ampicillin resistant protein [Cloning vector pSU22]
 gi|322392876|gb|ADW95860.1| beta-lactamase [Gene deletion vector pJL2]
          Length = 286

 Score = 44.1 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCDTLLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|228476794|ref|ZP_04061442.1| beta-lactamase class A [Streptococcus salivarius SK126]
 gi|228251531|gb|EEK10668.1| beta-lactamase class A [Streptococcus salivarius SK126]
          Length = 430

 Score = 44.1 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 20/174 (11%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT------AATQN 114
           ++ +++     ++  Y AS+ K+  LY   E L  KKL L+ +   +        A   +
Sbjct: 215 LDTDRVAAINDEKSMYAASVAKLGVLYYAQERLSQKKLSLSDEYQYTSAVNGFPGAYDPD 274

Query: 115 PSK--LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
            S     + +   ++ E  + A+   S N  +   G +++    K      +KA      
Sbjct: 275 GSGKISKMPDDKNYSLENLLKAVAQNSDNVATNILGYYVTNQYDKAFQKSVDKA------ 328

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
                 A+  +   +  TAR    L   + +       Y S   +    RI  N
Sbjct: 329 -----AATSWNMDKKELTARAAGTLMEAVYRQNGDIITYLSSTDYD-GERISKN 376


>gi|7672821|gb|AAF66653.1| class A beta-lactamase [Proteus mirabilis]
          Length = 286

 Score = 44.1 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 60/159 (37%), Gaps = 17/159 (10%)

Query: 26  RNIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPR 75
           ++ ++     F +  +   A          +E     +   I +D+N  ++    + E R
Sbjct: 4   KHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEER 63

Query: 76  YPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGI 132
           +P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +  
Sbjct: 64  FPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELC 121

Query: 133 LALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            A IT S N  +      I G ++   F   M +   ++
Sbjct: 122 SAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|322373968|ref|ZP_08048502.1| beta-lactamase [Streptococcus sp. C150]
 gi|321276934|gb|EFX54005.1| beta-lactamase [Streptococcus sp. C150]
          Length = 430

 Score = 44.1 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 61/174 (35%), Gaps = 20/174 (11%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT------AATQN 114
           ++  ++     ++  Y AS+ K+  LY   E L  KKL L+ +   +        A   +
Sbjct: 215 LDTGKIAAINDEKSMYAASVAKLGVLYYAQERLSHKKLSLSDEYQYTSAVNGFPGAYDPD 274

Query: 115 PSK--LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
            S     + +   ++ E  + A+   S N  +   G +++    K      +KA      
Sbjct: 275 GSGKISKMPDDKNYSLENLLKAVAQNSDNVATNILGYYVANQYDKSFQKSVDKA------ 328

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
                 A+  +   +  TAR    L   + +       Y S   +    RI  N
Sbjct: 329 -----AATSWNMDKKELTARAAGTLMESVYRQNGDIINYLSSTDYD-GERISKN 376


>gi|294012899|ref|YP_003546359.1| putative beta-lactamase class A [Sphingobium japonicum UT26S]
 gi|292676229|dbj|BAI97747.1| putative beta-lactamase class A [Sphingobium japonicum UT26S]
          Length = 398

 Score = 44.1 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 3/81 (3%)

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT---QNPSKLYLKEKTYFTTEQGILAL 135
           S++K+       + +   K+ L+    ++K   T   Q  + L        T    +   
Sbjct: 135 SVSKLWVSMTFLDAVDRGKIRLSDSTTITKKDLTLFHQPTAALVGNSGWTTTYSDLMRRA 194

Query: 136 ITRSANDVSTAFGEFISGSEK 156
           +T+S N  + A    + G + 
Sbjct: 195 MTQSDNTANDALLRAVGGPDA 215


>gi|55669167|gb|AAV54522.1| beta-lactamase [Enterobacteria phage M13 vector DY3F63]
          Length = 286

 Score = 44.1 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 60/158 (37%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMASE------LHAKPKYSSIV----IDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          A+ +  ++V    +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGALVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|307544033|ref|YP_003896512.1| beta-lactamase [Halomonas elongata DSM 2581]
 gi|307216057|emb|CBV41327.1| beta-lactamase [Halomonas elongata DSM 2581]
          Length = 350

 Score = 44.1 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 44/144 (30%), Gaps = 17/144 (11%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHL--------NTQIPVSKT 109
           V D    +  G ++DE    AS  K++    + + + + +  L        +  +  S  
Sbjct: 107 VTDTGSGRHWGHREDERFPMASTFKVLACAALLDRVDAGQEELQRRVIYEQDDLVTYSPV 166

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAK 167
                      +     T      A +  S N  +    + I G  +   F   + +   
Sbjct: 167 TKEHVG-----EPG--MTLGSLCEAAMGYSDNSAANMVLKAIGGPSAVTDFTRSLGDDMT 219

Query: 168 KIGMQNTIYKNASGLHDKNQITTA 191
           ++    T    A     ++  T A
Sbjct: 220 RLDRWETKLNEAIPGDPRDTTTPA 243


>gi|111021373|ref|YP_704345.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus jostii RHA1]
 gi|110820903|gb|ABG96187.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus jostii RHA1]
          Length = 461

 Score = 44.1 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMT---LYIIF 90
           K+S  V D    Q+      + P  PAS TK++T     +  
Sbjct: 91  KFSGTVADAVTGQVLWSVNPQTPMTPASTTKVLTAGSALLAL 132


>gi|296128484|ref|YP_003635734.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
           anine-endopeptidase [Cellulomonas flavigena DSM 20109]
 gi|296020299|gb|ADG73535.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
           anine-endopeptidase [Cellulomonas flavigena DSM 20109]
          Length = 470

 Score = 44.1 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 39  IIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQS 95
            ++ ++A +    P     V+D    ++      DE   PAS  K++T       L  
Sbjct: 80  ALVDALAVDARLGPHVGVTVVDQLTGEVLASHAPDEGLVPASTAKVLTGIAALTALDP 137


>gi|16589040|gb|AAL26995.1|AF398334_1 class A HERA-2 beta-lactamase [Escherichia hermannii]
          Length = 290

 Score = 44.1 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 18/148 (12%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAKPK------------YSSI---VIDVNKNQMTGFK 70
           + I  +  I FL++I +   ++    P             ++ I   V++     + G++
Sbjct: 2   KKITPLFAIAFLTLIALLAPAQASVTPDMTDFLRQQEQRLHARIGMAVVNAQGETVFGYR 61

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA--TQNPSKLYLKEKTYFTT 128
           QDE     S  K +    + E LQ     L+ Q+ +   A       +K YL      + 
Sbjct: 62  QDERFPLTSTFKTLACAALLERLQKNGGSLDEQVTIPPDALLDYAPVTKNYLAP-ATISL 120

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK 156
                A ++ S N        ++ G + 
Sbjct: 121 RMLCAAAVSYSDNTAGNRILTYLGGPDA 148


>gi|325675183|ref|ZP_08154868.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Rhodococcus equi ATCC 33707]
 gi|325553889|gb|EGD23566.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Rhodococcus equi ATCC 33707]
          Length = 469

 Score = 44.1 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 7/89 (7%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQS 95
           L  ++  + S   A   ++ +V D         +  D P  PAS  K++T          
Sbjct: 84  LGAVLAPLVSN-PALGAFTGVVADARTGTTLWSRNPDTPMTPASTAKILTA-----AAAM 137

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKT 124
             L  + ++       ++    + +    
Sbjct: 138 LSLSPDHRVETRVVQGSRPGELVLVGGGD 166


>gi|89475516|gb|ABD73290.1| beta-lactamase CTX-M-59 [Klebsiella pneumoniae]
 gi|186920241|gb|ACC95405.1| CTX-M-59 [Klebsiella pneumoniae]
 gi|225579650|gb|ACN93994.1| beta-lactamase blaCTX-M-59 [Klebsiella pneumoniae]
 gi|225579652|gb|ACN93995.1| beta-lactamase blaCTX-M-59 [Klebsiella pneumoniae]
 gi|225579654|gb|ACN93996.1| beta-lactamase blaCTX-M-59 [Klebsiella pneumoniae]
 gi|225579656|gb|ACN93997.1| beta-lactamase blaCTX-M-59 [Klebsiella pneumoniae]
 gi|225579666|gb|ACN94002.1| beta-lactamase blaCTX-M-59 [Klebsiella pneumoniae]
 gi|225579670|gb|ACN94004.1| beta-lactamase blaCTX-M-59 [Klebsiella pneumoniae]
 gi|225579672|gb|ACN94005.1| beta-lactamase blaCTX-M-59 [Klebsiella pneumoniae]
 gi|225579676|gb|ACN94007.1| beta-lactamase blaCTX-M-59 [Klebsiella pneumoniae]
 gi|225579680|gb|ACN94009.1| beta-lactamase blaCTX-M-59 [Klebsiella pneumoniae]
 gi|225579682|gb|ACN94010.1| beta-lactamase blaCTX-M-59 [Klebsiella pneumoniae]
 gi|225579694|gb|ACN94016.1| beta-lactamase blaCTX-M-59 [Klebsiella pneumoniae]
 gi|225579704|gb|ACN94021.1| beta-lactamase blaCTX-M-59 [Klebsiella pneumoniae]
 gi|225579718|gb|ACN94028.1| beta-lactamase blaCTX-M-59 [Klebsiella pneumoniae]
 gi|225579736|gb|ACN94037.1| beta-lactamase blaCTX-M-59 [Klebsiella pneumoniae]
          Length = 291

 Score = 44.1 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S KL LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKLLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 115 HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 165


>gi|312138046|ref|YP_004005382.1| d-alanyl-d-alanine carboxypeptidase [Rhodococcus equi 103S]
 gi|311887385|emb|CBH46697.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus equi
           103S]
          Length = 469

 Score = 44.1 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 7/89 (7%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQS 95
           L  ++  + S   A   ++ +V D         +  D P  PAS  K++T          
Sbjct: 84  LGAVLAPLVSN-PALGAFTGVVADARTGTTLWSQNPDTPMTPASTAKILTA-----AAAM 137

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKT 124
             L  + ++       ++    + +    
Sbjct: 138 LSLSPDHRVETRVVQGSRPGELVLVGGGD 166


>gi|295135625|ref|YP_003586301.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine
           endopeptidase [Zunongwangia profunda SM-A87]
 gi|294983640|gb|ADF54105.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine
           endopeptidase [Zunongwangia profunda SM-A87]
          Length = 436

 Score = 44.1 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 68/217 (31%), Gaps = 56/217 (25%)

Query: 28  IQLMGKILFLSIIMISMAS-------------ELHAKPKYSSIVI-DVNKNQMTGFKQDE 73
           I++    L LSI  +S AS                 K  ++ +VI D   N++   K   
Sbjct: 3   IKIKLIFLLLSISCLSCASLKNTKNINQIFDHSPAFKQGFTGLVIYDPGSNKILFDKNGN 62

Query: 74  PRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
             + PAS TK+ T Y   + +          +P S   AT   S ++             
Sbjct: 63  KYFTPASNTKLFTFYTALKII-------GDSVP-SLKYATHGDSLIFKGTG--------- 105

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI--GMQNTIYKNASGLHDKNQITT 190
                    D +  + EF + +   F      K   +  G     +       D N   +
Sbjct: 106 ---------DPAFLYAEFDAKNTLDFLRNSDKKLFLLSPGFTEKKFGPGWAWDDYNDYYS 156

Query: 191 ARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITN 226
           A          R  FP Y       +FR+   + + N
Sbjct: 157 AE---------RNAFPLYGNVV---EFRFQNGQNLPN 181


>gi|261340966|ref|ZP_05968824.1| beta-lactamase [Enterobacter cancerogenus ATCC 35316]
 gi|288316829|gb|EFC55767.1| beta-lactamase [Enterobacter cancerogenus ATCC 35316]
          Length = 388

 Score = 44.1 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D     ASLTK+MT  ++ + L    + L+   P+SK A     +++   +    T    
Sbjct: 82  DSVIRIASLTKLMTSELLVKLLDQGVVKLDD--PLSKYA--PPGARVPTYQGAPITLVNL 137


>gi|261381432|ref|ZP_05986005.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Neisseria subflava NJ9703]
 gi|284795582|gb|EFC50929.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Neisseria subflava NJ9703]
          Length = 470

 Score = 44.1 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 7/81 (8%)

Query: 31  MGKILFLSIIMISMASELH-----AKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMM 84
           +  IL + ++M    S         + + S  V +++  ++      DE R PAS  K++
Sbjct: 3   LKSILSIGLMMAVCPSWALDFGRIPENEISVYVQELDSGKVIAEHRADELRNPASTMKLV 62

Query: 85  TLYIIFEYLQSKKLHLNTQIP 105
           T +  F  L        T+  
Sbjct: 63  TAFTAFRML-GGDYRWKTEFK 82


>gi|319948648|ref|ZP_08022771.1| D-alanyl-D-alanine carboxypeptidase [Dietzia cinnamea P4]
 gi|319437676|gb|EFV92673.1| D-alanyl-D-alanine carboxypeptidase [Dietzia cinnamea P4]
          Length = 452

 Score = 44.1 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTL 86
           I+  +A +  A    ++ V+D    Q+    +  E + PAS TK++T 
Sbjct: 67  ILTPLARD-PAVGDLTASVVDDATGQVLWEVRPREAKVPASTTKLLTA 113


>gi|328956441|ref|YP_004373827.1| putative beta-lactamase (class A) precursor [Carnobacterium sp.
           17-4]
 gi|328672765|gb|AEB28811.1| putative beta-lactamase (class A) precursor [Carnobacterium sp.
           17-4]
          Length = 263

 Score = 44.1 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 65  QMTGFKQDEPRYP-ASLTKMMTLYIIF-EYLQSKKLHLNTQIPVSKTAATQNPSKL--YL 120
           Q+   K  E  +P AS+ K+  +Y+ + E     KL+L  ++ VSK     N S +   L
Sbjct: 29  QLLFSKNKEELFPSASIIKL-PIYLYYYEQAIQGKLNLMDRVNVSKK-GRANGSGVMHVL 86

Query: 121 KEKTYFTTEQGILALITRSANDVSTAF 147
                ++ E+ +  +I  S N+ +   
Sbjct: 87  TSIEDWSIEELLQLMIAVSDNEATNQL 113


>gi|74474880|dbj|BAE44428.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 290

 Score = 44.1 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 39/123 (31%), Gaps = 11/123 (8%)

Query: 42  ISMASELHAKPKYSSI-----------VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIF 90
           +   + + A   ++++           ++D    +  G +QDE     S  K +    + 
Sbjct: 24  VPAEAAITAATDFAALEKACAGRLGVTLLDTASGRRIGHRQDERFPMCSTFKSVLAATVL 83

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
              + +   L+T++PV       +            T      A I  S N  +      
Sbjct: 84  SQAERRPALLDTRVPVRDADLLSHAPVTRRHAGKDMTVRDLCRATIITSDNTAANLLFGV 143

Query: 151 ISG 153
           + G
Sbjct: 144 VGG 146


>gi|237652207|gb|ACR08799.1| beta-lactamase TEM-1 [Chryseobacterium gleum]
 gi|238909318|gb|ACR77750.1| beta-lactamase TEM-116 [Burkholderia cenocepacia]
 gi|238909320|gb|ACR77751.1| beta-lactamase TEM-116 [Pannonibacter phragmitetus]
 gi|239787074|gb|ACS16652.1| BlaTEM-116 [Achromobacter denitrificans]
          Length = 177

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 59/163 (36%), Gaps = 27/163 (16%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 7   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 66

Query: 77  PASLTKMMT---LYI---IFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTT 128
           P     MM+   + +   +   + + +  L  +I  S+    +    ++ +L +    T 
Sbjct: 67  P-----MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTV 119

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            +   A IT S N  +      I G ++   F   M +   ++
Sbjct: 120 RELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 162


>gi|229470810|gb|ACQ71977.1| blaTEM-116 [Elizabethkingia meningoseptica]
          Length = 174

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 59/163 (36%), Gaps = 27/163 (16%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 4   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 63

Query: 77  PASLTKMMT---LYI---IFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTT 128
           P     MM+   + +   +   + + +  L  +I  S+    +    ++ +L +    T 
Sbjct: 64  P-----MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTV 116

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            +   A IT S N  +      I G ++   F   M +   ++
Sbjct: 117 RELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 159


>gi|27804803|gb|AAO21433.1| extended-spectrum beta-lactamase/aminoglycoside modifying enzyme
           fusion protein [synthetic construct]
          Length = 586

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 59/163 (36%), Gaps = 27/163 (16%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PASLTKMMT---LYI---IFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTT 128
           P     MM+   + +   +   + + +  L  +I  S+    +    ++ +L +    T 
Sbjct: 65  P-----MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTV 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            +   A IT S N  +      I G ++   F   M +   ++
Sbjct: 118 RELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|312141353|ref|YP_004008689.1| beta-lactamase [Rhodococcus equi 103S]
 gi|311890692|emb|CBH50011.1| putative beta-lactamase [Rhodococcus equi 103S]
          Length = 297

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/112 (13%), Positives = 41/112 (36%), Gaps = 9/112 (8%)

Query: 71  QDEPRYPASLTKMMTLYIIF-EYLQSKKLHLNTQIPVSKTAATQNPSKL-YLKEKTYFTT 128
            D+P   AS+ K+  L + F   + +  L    Q+ +  +  T  P+ +  + +    + 
Sbjct: 38  ADDPVVTASVYKL-PLVVAFCRLVDAGDLDPREQVTLDPSTRTTGPTGVSQMSDPVRMSL 96

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
                +++  S N  +      +          ++   + +G+ +T     +
Sbjct: 97  RDMARSMMAMSDNAAADELLRRVG------VDRVNETMRSLGLSSTRIVGGT 142


>gi|146260240|gb|ABQ14444.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIRYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|119394773|gb|ABL74511.1| Gil1 [Citrobacter gillenii]
          Length = 286

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 62/160 (38%), Gaps = 21/160 (13%)

Query: 27  NIQLMGKILFLSIIMISMA------------SELHAKPKYSSIVIDVNKNQMTGFKQDEP 74
           + +L    L  +  + + A            S+L A+  Y+ +  D+   ++    + + 
Sbjct: 3   HFRLALIPLLTAFCLPAFAHPTTLNKVKEAESQLTARVGYAEL--DLTSGEILESYRLQE 60

Query: 75  RYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQG 131
           R+P  S  K++    +   + + K  L+ +IP S+    +    ++ +L +    T  + 
Sbjct: 61  RFPMMSTFKVLLCGAVLARVDAGKERLDRRIPFSRRDLVEYSPVTEKHLTDG--MTVGEL 118

Query: 132 ILALITRSANDVSTAFGEFISGSE--KKFAILMSNKAKKI 169
             A IT S N  +      I G +    F     ++  ++
Sbjct: 119 CDAAITMSDNTAANLLLTAIGGPQGLTAFLRTTGDRVTRL 158


>gi|289810044|ref|ZP_06540673.1| beta-lactam binding protein AmpH [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 243

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D     ASLTK+MT  ++ + L    + LN   P+SK A     + +   + T  T    
Sbjct: 35  DSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA--PPGAHVPTYQGTPITLVNL 90


>gi|55980725|ref|YP_144022.1| beta-lactamase-like protein [Thermus thermophilus HB8]
 gi|55772138|dbj|BAD70579.1| beta-lactamase related protein [Thermus thermophilus HB8]
          Length = 397

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL--YLKEK 123
           +   ++D P   AS  K++ L  + E +++ +   +  + + + A    PS L     E 
Sbjct: 150 VLALEEDTPLAVASAFKLLVLAALREEVEAGRRAWDEVVRL-EEAWKSLPSGLLQGWPEG 208

Query: 124 TYFTTEQGILALITRSANDVSTAF 147
           +  T       +I+ S N  + A 
Sbjct: 209 SPLTLHTLAALMISLSDNTATDAL 232


>gi|325000954|ref|ZP_08122066.1| beta-lactamase [Pseudonocardia sp. P1]
          Length = 288

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 59/176 (33%), Gaps = 34/176 (19%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY----LKEKTYFTTEQGIL 133
           AS+TK+++ Y     ++   +  +        AA    + +           F T++   
Sbjct: 54  ASVTKLLSAYAALVAVEEGAVDWDD-------AAGPEGATVRHLIAHTSGLAFDTDEVKA 106

Query: 134 ALI---TRSANDVSTAFGEFISG-SEKKFAILMSNKAKK-IGMQNTIYKNASGLHDKNQI 188
           A       S    +   G+ I+G +   FA  +     + +GM  T      G      +
Sbjct: 107 APGERRIYSNTGFAV-LGDAIAGATGIGFADYLHQAVCEPLGMTRTRL---EGAPGAGAV 162

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGY 244
           +TA D ++    L+   P+     ++ +                    +DG+  GY
Sbjct: 163 STAADLSLFAAELQA--PKLLDPRTVAEATT------------VAYPGLDGLLPGY 204


>gi|315502186|ref|YP_004081073.1| d-alanyl-d-alanine
           carboxypeptidase/d-alanyl-d-alanine-endopeptidase
           [Micromonospora sp. L5]
 gi|315408805|gb|ADU06922.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Micromonospora sp. L5]
          Length = 527

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 3/79 (3%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAATQN 114
           +V+D    +    +    R  PAS TK++T     E L        T++ V     A   
Sbjct: 60  VVVDTTTGRTLYDRNGTRRLIPASNTKLLTSAAAMELLGPGH-RFTTEVSVDGPRRAGML 118

Query: 115 PSKLYLKEKTYFTTEQGIL 133
              LYL+     T      
Sbjct: 119 SGDLYLRGGGDPTILAADY 137


>gi|257068455|ref|YP_003154710.1| D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family
           [Brachybacterium faecium DSM 4810]
 gi|256559273|gb|ACU85120.1| D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family
           [Brachybacterium faecium DSM 4810]
          Length = 469

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 47/155 (30%), Gaps = 31/155 (20%)

Query: 58  VIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEY------------LQSKKLHL---- 100
           V+D    Q+   +  D    PAS  K++T   +               ++   + L    
Sbjct: 104 VVDAGTGQILASRDPDTALVPASTLKLLTAAAVLREYSGDEVLRTRASVEDGVITLIGGG 163

Query: 101 NTQIPVS--KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
           +  +     +T AT+  S    +     T        +   +N+         +G    +
Sbjct: 164 DMTLTEERLRTLATEAASLATEQGADEVTVA-LDDTFLVGGSNE-----AWGNNGPAGGW 217

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKNQITTARD 193
               ++ A   G  +        L+     T ARD
Sbjct: 218 VTPTASLALDEGWLD------EELYGPKSTTPARD 246


>gi|155049569|gb|ABS90365.1| extended spectrum beta-lactamase CTX-M-67 [Escherichia coli]
          Length = 291

 Score = 43.7 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N S +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYSPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|71082599|gb|AAZ23494.1| bla-TEM-139 extended spectrum beta-lactamase [Klebsiella
           pneumoniae]
          Length = 286

 Score = 43.7 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIEMDLNSGKILESFRPEERF 64

Query: 77  P-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|146310505|ref|YP_001175579.1| beta-lactam binding protein AmpH [Enterobacter sp. 638]
 gi|145317381|gb|ABP59528.1| beta-lactamase [Enterobacter sp. 638]
          Length = 388

 Score = 43.7 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 48/141 (34%), Gaps = 35/141 (24%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSI--------------------VIDV 61
           + ++R +  +  +  +S+  +  A  + A    S I                    VID 
Sbjct: 2   LSLKRCLFSIAALCAVSLSTVQAAQPITAPVFASDIADRYANLIYYGSGATGMAMVVIDG 61

Query: 62  NK------NQMTGFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           N+       +           D     ASLTK+MT  ++ + L    + LN   P+SK A
Sbjct: 62  NQRVFRSFGETRPGNNVHPQLDSVIRIASLTKLMTSEMLVKLLDQGVVKLND--PLSKYA 119

Query: 111 ATQNPSKLYLKEKTYFTTEQG 131
                 ++   + T  +    
Sbjct: 120 --PPGYRVPTYQGTPISLVNL 138


>gi|241759430|ref|ZP_04757534.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Neisseria flavescens SK114]
 gi|241320212|gb|EER56545.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Neisseria flavescens SK114]
          Length = 470

 Score = 43.7 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 7/81 (8%)

Query: 31  MGKILFLSIIMISMASELH-----AKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMM 84
           +  IL + ++M    S         + + S  V +++  ++      DE R PAS  K++
Sbjct: 3   LKSILSVGLMMAVCPSWALDFGRIPENEISVYVQELDSGKVIAEHRADELRNPASTMKLV 62

Query: 85  TLYIIFEYLQSKKLHLNTQIP 105
           T +  F  L        T+  
Sbjct: 63  TAFTAFRML-GGDYRWKTEFK 82


>gi|4732037|gb|AAD28563.1|AF118920_1 beta-lactamase [Cloning vector pSPZ1(+)]
 gi|22000816|gb|AAM88286.1|AF525778_1 beta lactamase [Expression vector pCMH285]
 gi|452349|emb|CAA82706.1| unnamed protein product [synthetic construct]
 gi|4322593|gb|AAD16103.1| beta-lactamase [Cloning vector pCPT8]
 gi|4322640|gb|AAD16105.1| beta-lactamase [Cloning vector pCPT9]
 gi|13094135|dbj|BAB32736.1| beta-lactamase [Cloning vector pPV2]
 gi|13094138|dbj|BAB32738.1| beta-lactamase [Cloning vector pPVLUC441]
 gi|22001013|gb|AAM82245.1| beta lactamase [Expression vector pCMH411]
 gi|222093508|gb|ACM43516.1| beta-lactamase [Transformation vector pOKE104]
          Length = 286

 Score = 43.7 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++  + +   + + +  L  +   S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCHTLLSRIDAGQEQLGRRARYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|19553893|ref|NP_601895.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium glutamicum
           ATCC 13032]
 gi|62391536|ref|YP_226938.1| penicillin-binding protein, D-Ala-D-Ala carboxypeptidase
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326878|emb|CAF20722.1| PENICILLIN-BINDING PROTEIN, D-ALA-D-ALA CARBOXYPEPTIDASE
           [Corynebacterium glutamicum ATCC 13032]
          Length = 427

 Score = 43.7 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 7/72 (9%)

Query: 60  DVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           DV   ++     Q     PAS TK++T  +    L   +      I  +K    + P  +
Sbjct: 88  DVESGEVVWEQNQGTAVRPASATKILTAAVALYEL--GR---EDTIT-TKVVEGEQPGTV 141

Query: 119 YLKEKTYFTTEQ 130
            +K     T  +
Sbjct: 142 VIKAGGDVTLSE 153


>gi|302510158|ref|XP_003017039.1| hypothetical protein ARB_05333 [Arthroderma benhamiae CBS 112371]
 gi|291180609|gb|EFE36394.1| hypothetical protein ARB_05333 [Arthroderma benhamiae CBS 112371]
          Length = 2838

 Score = 43.7 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 42/119 (35%), Gaps = 14/119 (11%)

Query: 72   DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI----------PVSK--TAATQNPSKLY 119
            D   + AS+TK+MT   +   ++  ++ L+  I          PV     A  +  +K  
Sbjct: 2652 DSVYWMASMTKLMTAIAVMLCVERGQISLDEDIATVLPDLCSLPVLDRVDAKGKYSTKTR 2711

Query: 120  LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            + E      E G   +     +            S ++F    +   K +GM +T +  
Sbjct: 2712 IMETFPLIFEPGSNFMYGSGFDWAGELVARLNGVSLEEFLQ--AEVCKPLGMTSTTFHP 2768


>gi|13492214|gb|AAK28131.1|AF335419_1 beta-lactamase [Cloning vector pPGKneo-I]
 gi|13492219|gb|AAK28135.1|AF335420_2 beta-lactamase [Cloning vector pPGKneo-II]
 gi|228484711|gb|ACQ43938.1| beta-lactamase [cloning vector pHC02]
 gi|228484715|gb|ACQ43941.1| beta-lactamase [cloning vector pHC03]
 gi|228484719|gb|ACQ43944.1| beta-lactamase [cloning vector pHC04]
          Length = 286

 Score = 43.7 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++  + +   + + +  L  +   S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCHTLLSRIDAGQEQLGRRARYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|46198712|ref|YP_004379.1| putative beta-lactamase [Thermus thermophilus HB27]
 gi|46196335|gb|AAS80752.1| putative beta-lactamase [Thermus thermophilus HB27]
          Length = 397

 Score = 43.7 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL--YLKEK 123
           +   ++D P   AS  K++ L  + E +++ +   +  + + + A    PS L     E 
Sbjct: 150 ILALEEDTPLAVASAFKLLVLAALREEVEAGRRAWDEVVRL-EEAWKSLPSGLLQGWPEG 208

Query: 124 TYFTTEQGILALITRSANDVSTAF 147
           +  T       +I+ S N  + A 
Sbjct: 209 SPLTLHTLAALMISLSDNTATDAL 232


>gi|146260180|gb|ABQ14420.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 43.7 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             + P  ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYPPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|288959993|ref|YP_003450333.1| beta-lactamase [Azospirillum sp. B510]
 gi|288912301|dbj|BAI73789.1| beta-lactamase [Azospirillum sp. B510]
          Length = 301

 Score = 43.7 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 9/154 (5%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA----ATQ 113
           V+D    ++ G++ DE     S  K +    + + +   K  L+ +IPV+K      A  
Sbjct: 60  VLDTATGRLRGWRGDERFPMCSTFKFLLAAAVLKSVDQGKDRLDRRIPVTKADLLPYAPF 119

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAF--GEFISGSEKKFAILMSNKAKKIGM 171
           + ++L     T  T  +   A +T S N  +     G         F   + ++  ++  
Sbjct: 120 SETRL---TGTPPTLAELCEAAVTLSDNTAANLLLPGVGDPAGLTAFLRGIGDQTTRLDR 176

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
                 +A     ++  T A     +  LL  + 
Sbjct: 177 NEPTLNSAIPGDPRDTTTPAAMVRGMERLLIGDV 210


>gi|329297511|ref|ZP_08254847.1| beta-lactam binding protein AmpH [Plautia stali symbiont]
          Length = 389

 Score = 43.7 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE 129
           +QD     ASL+K+MT  ++ +  +  ++ L+   P+SK A     +++           
Sbjct: 78  QQDSLIRIASLSKLMTSEVMVKMAERGQIRLDD--PLSKYA--PPGARVPTYNGQPIRLI 133

Query: 130 QG 131
             
Sbjct: 134 NL 135


>gi|21325471|dbj|BAC00093.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
           [Corynebacterium glutamicum ATCC 13032]
          Length = 411

 Score = 43.7 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 7/72 (9%)

Query: 60  DVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           DV   ++     Q     PAS TK++T  +    L   +      I  +K    + P  +
Sbjct: 72  DVESGEVVWEQNQGTAVRPASATKILTAAVALYEL--GR---EDTIT-TKVVEGEQPGTV 125

Query: 119 YLKEKTYFTTEQ 130
            +K     T  +
Sbjct: 126 VIKAGGDVTLSE 137


>gi|297545248|ref|YP_003677550.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296843023|gb|ADH61539.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 420

 Score = 43.7 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 52/169 (30%), Gaps = 17/169 (10%)

Query: 59  IDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID+N  Q       +    AS  K+ +  Y+ +  +   K+  N ++  ++         
Sbjct: 196 IDLNTGQTLEINGYDSFIAASTYKVPLNFYL-YTLITDGKIDPNMKVQYTQADYEGGAGS 254

Query: 118 LYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
           +      +Y+T  +     I  S N  S      +               +K+G     Y
Sbjct: 255 IQADPVGSYYTIRELSRRSIEESDNIASNMIMRVVGR------DNYIKFMEKLGA----Y 304

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
                    + IT+ RD ++    L      +        +  +N I  
Sbjct: 305 VIPY----SSNITSPRDMSMYMKKLLDYVNAHPDTAGELMYYLKNTIYN 349


>gi|291337179|gb|ADD96657.1| beta-lactamase [Serratia marcescens]
          Length = 286

 Score = 43.7 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEEQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|226363727|ref|YP_002781509.1| D-alanyl-D-alanine carboxypeptidase [Rhodococcus opacus B4]
 gi|226242216|dbj|BAH52564.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus opacus
           B4]
          Length = 461

 Score = 43.7 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 53  KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTL 86
           K+S  V D    Q+      + P  PAS TK++T 
Sbjct: 91  KFSGTVADAVTGQVLWSVNPQTPMTPASTTKVLTA 125


>gi|160903197|ref|YP_001568778.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Petrotoga mobilis SJ95]
 gi|160360841|gb|ABX32455.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Petrotoga mobilis SJ95]
          Length = 453

 Score = 43.7 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 60  DVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
           D+  N++      +  + PAS TK++T  +  E L
Sbjct: 106 DLGTNEVLFNYNSDKLFIPASNTKLITALVALESL 140


>gi|146260230|gb|ABQ14440.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 43.7 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 56/150 (37%), Gaps = 17/150 (11%)

Query: 35  LFLSIIMISMA-SELHAK---------PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKM 83
            F +  +   A  E  AK          +   I +D+N  ++    + E R+P  S  K+
Sbjct: 5   FFAAFCLPVFAHPETLAKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKV 64

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGILALITRSAN 141
           +    +   + + +  L  +I  S+    +    ++ +L +    T  +   A IT S N
Sbjct: 65  LLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCSAAITMSDN 122

Query: 142 DVSTAFGEFISGSEK--KFAILMSNKAKKI 169
             +      I G ++   F   M +   ++
Sbjct: 123 TAANLLLTTIGGPKELTAFLHNMGDHVTRL 152


>gi|289579043|ref|YP_003477670.1| peptidoglycan-binding protein [Thermoanaerobacter italicus Ab9]
 gi|289528756|gb|ADD03108.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter italicus
           Ab9]
          Length = 420

 Score = 43.7 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 52/169 (30%), Gaps = 17/169 (10%)

Query: 59  IDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID+N  Q       +    AS  K+ +  Y+ +  +   K+  N ++  ++         
Sbjct: 196 IDLNTGQTLEINGYDSFIAASTYKVPLNFYL-YTLITDGKIDPNMKVQYTQADYEGGAGS 254

Query: 118 LYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
           +      +Y+T  +     I  S N  S      +               +K+G     Y
Sbjct: 255 IQADPVGSYYTIRELSRRSIEESDNIASNMIMRVVGR------DNYIKFMEKLGA----Y 304

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
                    + IT+ RD ++    L      +        +  +N I  
Sbjct: 305 VIPY----SSNITSPRDMSMYMKKLLDYVNAHPDTAGELMYYLKNTIYN 349


>gi|99031866|pdb|2B5R|A Chain A, 1b Lactamase  B LACTAMASE INHIBITOR
 gi|99031868|pdb|2B5R|B Chain B, 1b Lactamase  B LACTAMASE INHIBITOR
          Length = 263

 Score = 43.7 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 17  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 76

Query: 111 ATQNP--SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
              N   ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 77  LVYNSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 134

Query: 167 KKI 169
            ++
Sbjct: 135 TRL 137


>gi|99082099|ref|YP_614253.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Ruegeria sp. TM1040]
 gi|99038379|gb|ABF64991.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Ruegeria sp. TM1040]
          Length = 494

 Score = 43.7 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 57  IVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSK 96
           +V +    Q+    + D    PAS+ K++T     + L + 
Sbjct: 62  VVANARTGQVLESVEGDALLPPASVAKVLTALYALDSLGAG 102


>gi|56718407|gb|AAW27918.1| beta-lactamase [Photobacterium phosphoreum]
          Length = 285

 Score = 43.7 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 53/156 (33%), Gaps = 13/156 (8%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKYSSI-----------VIDVNKNQMTGFKQDEPR 75
            ++ +   L LS   ++ A     +P  ++I           V + N N    +  ++  
Sbjct: 2   KLRFIASTLLLSFSQLASAQISQIEPALTNIEQQLGGTVAVAVYNANTNTSWSYHGEQRV 61

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
              S  K +    +     +K++ LN  I + ++           +  T  T  Q   A 
Sbjct: 62  PMMSTFKTLACADLLHQADTKRVDLNQPIMIKQSDILSYAPVTTDRVGTSMTLAQLCDAT 121

Query: 136 ITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
           +  S N  +      I G  S  +F   + +   ++
Sbjct: 122 MLTSDNTAANLVLNNIGGPKSVTQFIRTLDDDTTRL 157


>gi|27363491|ref|NP_759019.1| beta-lactamase [Vibrio vulnificus CMCP6]
 gi|27359607|gb|AAO08546.1| Beta-lactamase [Vibrio vulnificus CMCP6]
          Length = 333

 Score = 43.7 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 92/249 (36%), Gaps = 42/249 (16%)

Query: 23  YIQRNIQLMGKILFLSIIMI--SMASELHAKP------KYSSIVI--------DVNKNQM 66
           ++ R+I L   +L  S + I  ++A+E + K         S  ++        ++   + 
Sbjct: 4   FMNRSIALCFTLLISSFVPIQPAVANEHNFKDVSQKLETISQRLVGRIGVAAQEIGSGER 63

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAATQNPSKL--YLKEK 123
                DE    AS  K+     + E +   +L L+  I V  +T  T + +    ++   
Sbjct: 64  ITVNGDEMFVMASTYKVAIAVALLERIDKGELKLSDLIDVPQETMVTGDGAIAVNFVHPG 123

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI-------- 175
              +    I  +IT S N  +      ++G  +     ++   + IG+ +          
Sbjct: 124 IKLSIANLIEPMITLSDNTATD-ICLKLAGGPEA----VTKVMRNIGITDLRVDRYTSEI 178

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN---RIITNHNKLLN 232
            ++  GL DK   +      +L   L ++ P       +R  ++     R  ++ N +L 
Sbjct: 179 LRDFYGLPDKAYSS------VLAKALAQD-PSLASKQPLRNLKFEQEDLRDQSSPNAMLE 231

Query: 233 KMHNIDGIK 241
            +  ID  K
Sbjct: 232 LLLAIDSGK 240


>gi|282852262|ref|ZP_06261608.1| beta-lactamase [Lactobacillus gasseri 224-1]
 gi|282556591|gb|EFB62207.1| beta-lactamase [Lactobacillus gasseri 224-1]
          Length = 257

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 56/150 (37%), Gaps = 17/150 (11%)

Query: 35  LFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKM 83
           LF +  +   A          +E     +   I +D+N  ++    + E R+P  S  K+
Sbjct: 43  LFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKV 102

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGILALITRSAN 141
           +    +   + + +  L  +I  S+    +    ++ +L +    T  +   A IT S N
Sbjct: 103 LLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCSAAITMSDN 160

Query: 142 DVSTAFGEFISGSEK--KFAILMSNKAKKI 169
             +      I G ++   F   M +   ++
Sbjct: 161 TAANLLLTTIGGPKELTAFLHNMGDHVTRL 190


>gi|1052964|gb|AAA80669.1| beta-lactamase [Cloning vector YITAG100]
 gi|1052968|gb|AAA80672.1| beta-lactamase [Cloning vector YATAG200]
          Length = 266

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|298252659|ref|ZP_06976453.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
           [Gardnerella vaginalis 5-1]
 gi|297533023|gb|EFH71907.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
           [Gardnerella vaginalis 5-1]
          Length = 596

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 22/127 (17%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP-------VSK 108
           ++++D N   +   + +  R PAS  K +T  +    L      L+TQ+        + +
Sbjct: 162 AVIMDANGRVVASHEPNALREPASTLKTLTASVASRTLDMGS-TLDTQVFLLPKTGGIPE 220

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            A++ N  KL L+             L+    ND                  L    A  
Sbjct: 221 RASSTNARKLVLRGNGDM--------LLGVGEND------WHHVNGRAGLTTLARRTANA 266

Query: 169 IGMQNTI 175
           + ++N  
Sbjct: 267 LKLENIH 273


>gi|283783580|ref|YP_003374334.1| putative D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Gardnerella vaginalis 409-05]
 gi|283441821|gb|ADB14287.1| putative D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Gardnerella vaginalis 409-05]
          Length = 596

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 22/127 (17%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP-------VSK 108
           ++++D N   +   + +  R PAS  K +T  +    L      L+TQ+        + +
Sbjct: 162 AVIMDANGRVVASHEPNALREPASTLKTLTASVASRTLDMGS-TLDTQVFLLPKTGGIPE 220

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
            A++ N  KL L+             L+    ND                  L    A  
Sbjct: 221 RASSTNARKLVLRGNGDM--------LLGVGEND------WHHVNGRAGLTTLARRTANA 266

Query: 169 IGMQNTI 175
           + ++N  
Sbjct: 267 LKLENIH 273


>gi|68137406|gb|AAY85632.1| extended spectrum beta-lactamase TEM-143 [Escherichia coli]
          Length = 286

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 63/180 (35%), Gaps = 17/180 (9%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           A IT S N  +      I G ++   F   M +   ++         A    +++    A
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDCWEPELNEAIPNDERDTTMPA 182


>gi|4731623|gb|AAD28531.1|AF134572_2 beta-lactamase [Cloning vector p34S-Sm2]
 gi|4731626|gb|AAD28533.1|AF134573_2 beta-lactamase [Cloning vector p34S-Sm3]
 gi|1262901|gb|AAB36663.1| beta-lactamase [Expression vector pEXT20]
 gi|3135594|gb|AAC26206.1| beta-lactamase [Cloning vector p34S-Cm]
 gi|3135597|gb|AAC26208.1| beta-lactamase [Cloning vector p34S-Gm]
 gi|3135600|gb|AAC26210.1| beta-lactamase [Cloning vector p34S-Km]
 gi|3135603|gb|AAC26212.1| beta-lactamase [Cloning vector p34S-Sm]
 gi|3135606|gb|AAC26214.1| beta-lactamase [Cloning vector p34S-Tc]
 gi|3135609|gb|AAC26216.1| beta-lactamase [Cloning vector p34S-Tp]
 gi|3777575|gb|AAC64938.1| beta-lactamase [Cloning vector p34S-Cm2]
 gi|3777578|gb|AAC64940.1| beta-lactamase [Cloning vector p34S-Km3]
 gi|3777581|gb|AAC64942.1| beta-lactamase [Cloning vector p34S-Tp2]
 gi|9885347|gb|AAG01407.1| beta-lactamase [Integration vector pVH-2]
 gi|50253789|gb|AAT72049.1| beta-lactamase [Promoter-probe vector pXH200]
 gi|50253793|gb|AAT72052.1| beta-lactamase [Promoter-probe vector pXH201]
 gi|50253797|gb|AAT72055.1| beta-lactamase [Promoter-probe vector pXH202]
 gi|50253801|gb|AAT72058.1| beta-lactamase [Promoter-probe vector pXH203]
 gi|50253805|gb|AAT72061.1| beta-lactamase [Promoter-probe vector pXH204]
          Length = 286

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|70980484|emb|CAJ17558.1| TEM-derived extended spectrum beta-lactamase [Salmonella enterica
           subsp. enterica serovar Derby]
 gi|70980486|emb|CAJ17559.1| TEM-derived extended spectrum beta-lactamase [Salmonella enterica
           subsp. enterica serovar Derby]
          Length = 286

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 63/180 (35%), Gaps = 17/180 (9%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           A IT S N  +      I G ++   F   M +   ++         A    +++    A
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDCWEPELNEAIPNDERDTTMPA 182


>gi|299135491|ref|ZP_07028680.1| Beta-lactamase [Afipia sp. 1NLS2]
 gi|298589746|gb|EFI49952.1| Beta-lactamase [Afipia sp. 1NLS2]
          Length = 294

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 70/195 (35%), Gaps = 24/195 (12%)

Query: 26  RNIQLMGKILFLSIIM---ISMASELHA-KPKYSSI-----------VIDVNKNQMTGFK 70
           R I L G    L +     +++A  L   K K S I           V+D   ++  G++
Sbjct: 4   RRIFLFGTTALLGVGCSGSVALARPLQDLKSKISRIESRVKGRLGVAVLDTGSDRRFGYR 63

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSK-LYLKEKTYFTT 128
           +DE     S  K+M    I + ++  +  L  ++  S++   T +P+   +L+     T 
Sbjct: 64  KDERFPMCSTFKLMAAAAILKRVEQGQETLERRVHFSQSDLVTYSPATEKHLESG--MTV 121

Query: 129 EQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
            +   A IT S N         + G      FA  + +   ++         A     ++
Sbjct: 122 AELCEAAITLSDNTAGNLMLGMLGGPPGVTAFARALGDPLTRLDRTELALNEAVPGDPRD 181

Query: 187 QITT---ARDQAILG 198
             T    A D   L 
Sbjct: 182 TTTPAAMAEDLRKLM 196


>gi|17127727|gb|AAK08976.1| extended-spectrum beta-lactamase [Kluyvera cryocrescens]
          Length = 291

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 57/160 (35%), Gaps = 17/160 (10%)

Query: 26  RNIQLMGKILF--LSIIMISMASELHAKPKYSSI-----------VID-VNKNQMTGFKQ 71
           R   L+   +F  L+  +   A  L  + K +++           +ID  + +Q+   + 
Sbjct: 7   RQFALLAATVFPLLAGSVSLQAQTLSVEQKLAALEQRSGGRLGVALIDTADGSQILY-RG 65

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE     S +K+M    + +  +S+   LN +I + K   T              +  + 
Sbjct: 66  DERFAMCSTSKVMAAAAVLKQSESQHDLLNQRIEIKKGDLTNYNPIAEKHVGGSMSLSEL 125

Query: 132 ILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             A +  S N         + G      FA  + ++  ++
Sbjct: 126 SAAALQYSDNVAMNKLIAQLGGPQGVTAFARKIGDETFRL 165


>gi|4732115|gb|AAD28611.1| beta-lactamase [Cloning vector pWD42-09]
 gi|4928116|gb|AAD33413.1| beta-lactmase [Cloning vector pWDYcos1.0.1]
          Length = 286

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   +   +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDPGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|4884789|gb|AAD31807.1|AF128862_3 beta-lactamase [Cloning vector pHIND2.2]
          Length = 286

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRILYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|167039606|ref|YP_001662591.1| peptidoglycan binding domain-containing protein [Thermoanaerobacter
           sp. X514]
 gi|300915144|ref|ZP_07132459.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp.
           X561]
 gi|307725068|ref|YP_003904819.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp.
           X513]
 gi|166853846|gb|ABY92255.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp.
           X514]
 gi|300888868|gb|EFK84015.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp.
           X561]
 gi|307582129|gb|ADN55528.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp.
           X513]
          Length = 422

 Score = 43.7 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 52/169 (30%), Gaps = 17/169 (10%)

Query: 59  IDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID+N  Q       +    AS  K+ +  Y+ +  +   K+  N ++  ++         
Sbjct: 198 IDLNTGQTFEINGYDSFIAASTYKVPLNFYL-YTLITDGKIDPNMKVQYTQADYEGGAGS 256

Query: 118 LYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
           +      +Y+T  +     I  S N  S      +               +K+G     Y
Sbjct: 257 IQADPVGSYYTIRELSRRSIEESDNIASNMIMRIVGR------DNYIKFMEKLGA----Y 306

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
                    N +T+ RD ++    L      +        +  +N I  
Sbjct: 307 VIPY----SNNVTSPRDMSMYMKNLLDYVNAHPDTAGELMYYLKNTIYN 351


>gi|74054892|gb|AAZ95767.1| putative TEM beta lactamase [bacterium RRLBTPL IV-3]
          Length = 286

 Score = 43.7 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|269316615|gb|ACZ37307.1| beta-lactamase [Pannonibacter phragmitetus]
 gi|269316617|gb|ACZ37308.1| beta-lactamase [Burkholderia cenocepacia]
          Length = 285

 Score = 43.7 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 4   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 63

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 64  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 121

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 122 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 159


>gi|121485911|gb|ABM54869.1| beta-lactamase TEM-159 [Proteus mirabilis]
          Length = 286

 Score = 43.7 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +      A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  P-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMISTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|156740893|ref|YP_001431022.1| beta-lactamase [Roseiflexus castenholzii DSM 13941]
 gi|156232221|gb|ABU57004.1| beta-lactamase [Roseiflexus castenholzii DSM 13941]
          Length = 353

 Score = 43.7 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 49  HAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           H KP   ++  D +         D+    AS+TK+ T   +   +    + L+  +
Sbjct: 34  HQKPDVFAVGTDAD-GHPLA--PDDLFPVASITKLATALAVLRLVDRGLIELDDPV 86


>gi|227510567|ref|ZP_03940616.1| beta-lactamase class A [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227190219|gb|EEI70286.1| beta-lactamase class A [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 250

 Score = 43.7 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 19/177 (10%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKLHLNTQIPVSK 108
            P+ + ++I VN  Q      ++    ASL K+    +  + +        L+ +I V +
Sbjct: 16  APETTGLIIKVNHEQRLAVNANKAFRSASLIKL--AILNDVLDSH----FDLDKEIHVRR 69

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                    L L  +  F  +  +  +I+ S N  +      I          ++    K
Sbjct: 70  DKLVGGAGVLQLLSERTFQLKDLLALMISVSDNSATNLVIAHIG------MEHVNQYLSK 123

Query: 169 IGMQNTIY----KNASGL-HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
           +G   T       + S L   K+  TT  +   L  +   N P    +F  ++FRY+
Sbjct: 124 MGFYKTRLNRYLMDTSALESGKDNYTTPAESQRLLEMAITNHPMTKTWFLNQQFRYK 180


>gi|303304754|emb|CBJ06718.1| extended-spectrum beta-lactamase [Proteus mirabilis]
          Length = 286

 Score = 43.3 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 60/159 (37%), Gaps = 17/159 (10%)

Query: 26  RNIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPR 75
           ++ ++     F +  +   A          +E     +   I +D+N  ++    + E R
Sbjct: 4   KHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEER 63

Query: 76  YPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGI 132
           +P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +  
Sbjct: 64  FPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELC 121

Query: 133 LALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            A IT S N  +      I G ++   F   M +   ++
Sbjct: 122 SAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|291586635|gb|ADE19118.1| extended-spectrum beta-lactamase TEM-116 [Pseudomonas fluorescens]
          Length = 278

 Score = 43.3 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 4   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 63

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 64  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 121

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 122 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 159


>gi|229823164|ref|ZP_04449233.1| hypothetical protein GCWU000282_00461 [Catonella morbi ATCC 51271]
 gi|229787330|gb|EEP23444.1| hypothetical protein GCWU000282_00461 [Catonella morbi ATCC 51271]
          Length = 577

 Score = 43.3 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 32/200 (16%)

Query: 89  IFEYLQSKKLHLNTQIPV--SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            ++ +  KK  L T++ +  S    T   +       +  + ++ I A++          
Sbjct: 296 TYQLIDEKKFELTTEVEIQESLRIGTGETAMSTHAIGSKISIQELIDAVVVSQDATALNY 355

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQIT----TARDQAILGILLR 202
             + + G     A  ++      G  +T      G++D   IT    +A D   L   L 
Sbjct: 356 LIQQVGG-----ANELNIWLNSQGYYSTKMSANLGVNDSGDITGVATSAYDLTNLLNQLA 410

Query: 203 KNF-----------PQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN 251
           ++                K     KF      +T       +       + G    S  +
Sbjct: 411 QDKLVNEKVSAAIKEAVLKTPVSTKFPADLTTVT------RRYEMTTPDQVG----SMHH 460

Query: 252 IVTSLRYKDDPIVAVVMGMP 271
               L      ++ VV+G P
Sbjct: 461 YAAILEMNGKSVIVVVLGAP 480


>gi|74054890|gb|AAZ95766.1| putative TEM beta lactamase [bacterium RRLBTTh23]
          Length = 286

 Score = 43.3 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|18996298|emb|CAC83818.1| ampicillin resistance protein [Expression vector pEUKA4-crgA]
 gi|18996302|emb|CAC83815.1| ampicillin resistance protein [Expression vector pEUKA4-gox1]
 gi|29788131|emb|CAD68163.1| beta-lactamase [Cloning vector pEUKA11]
          Length = 286

 Score = 43.3 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|167036901|ref|YP_001664479.1| peptidoglycan binding domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115320|ref|YP_004185479.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166855735|gb|ABY94143.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928411|gb|ADV79096.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 422

 Score = 43.3 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 52/169 (30%), Gaps = 17/169 (10%)

Query: 59  IDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID+N  Q       +    AS  K+ +  Y+ +  +   K+  N ++  ++         
Sbjct: 198 IDLNTGQTFEINGYDSFIAASTYKVPLNFYL-YTLITDGKIDPNMKVQYTQADYEGGAGS 256

Query: 118 LYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
           +      +Y+T  +     I  S N  S      +               +K+G     Y
Sbjct: 257 IQADPVGSYYTIRELSRRSIEESDNIASNMIMRIVGR------DNYIKFMEKLGA----Y 306

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
                    N +T+ RD ++    L      +        +  +N I  
Sbjct: 307 VIPY----SNNVTSPRDMSMYMKNLLDYVNAHPDTAGELMYYLKNTIYN 351


>gi|258551275|gb|ACV74420.1| beta-lactamase [Expression shuttle vector pGAPDH.Rep68]
 gi|258551278|gb|ACV74422.1| beta-lactamase [Expression shuttle vector pGAPDH.Rep68(Y156F)]
          Length = 286

 Score = 43.3 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|74054894|gb|AAZ95768.1| putative TEM beta lactamase [bacterium RRLBTPL III-2]
          Length = 286

 Score = 43.3 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|148767222|gb|ABR10608.1| polyprotein [synthetic construct]
          Length = 2975

 Score = 43.3 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 17/128 (13%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMT---LYI---IFEYLQSKKLHLNTQIP 105
            +   I +D+N  ++    + E R+P     MM+   + +   +   + + +  L  +I 
Sbjct: 43  ARVGYIELDLNSGKILESFRPEERFP-----MMSTFKVLLCGAVLSRIDAGQEQLGRRIH 97

Query: 106 VSKTAATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAIL 161
            S+    +    ++ +L +    T  +   A IT S N  +      I G ++   F   
Sbjct: 98  YSQNDLVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHN 155

Query: 162 MSNKAKKI 169
           M +   ++
Sbjct: 156 MGDHVTRL 163


>gi|53987101|gb|AAV27316.1| beta-lactamase [Cloning vector p713-909]
          Length = 286

 Score = 43.3 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|27367119|ref|NP_762646.1| beta-lactamase [Vibrio vulnificus CMCP6]
 gi|27358687|gb|AAO07636.1| Beta-lactamase [Vibrio vulnificus CMCP6]
          Length = 333

 Score = 43.3 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 69/193 (35%), Gaps = 26/193 (13%)

Query: 63  KNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAATQNPSKL--Y 119
             +      DE    AS  K+     + E +   +L L+  I V  +T  T + +    +
Sbjct: 60  SGERITVNGDEMFVMASTYKVAIAVALLERIDKGELKLSDLIDVPQETMVTGDGAIAVNF 119

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI---- 175
           +      +    I  +IT S N  +      ++G  +     ++   + IG+ +      
Sbjct: 120 VHPGIKLSIANLIEPMITLSDNTATD-ICLKLAGGPEA----VTKVMRNIGITDLRVDRY 174

Query: 176 ----YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRN---RIITNHN 228
                ++  GL DK   +      +L   L ++ P       +R  ++     R  ++ N
Sbjct: 175 TSEILRDFYGLPDKAYSS------VLAKALAQD-PSLASKQPLRNLKFEQEDLRDQSSPN 227

Query: 229 KLLNKMHNIDGIK 241
            +L  +  ID  K
Sbjct: 228 AMLELLLAIDSGK 240


>gi|294498248|ref|YP_003561948.1| hypothetical protein BMQ_1482 [Bacillus megaterium QM B1551]
 gi|294348185|gb|ADE68514.1| conserved hypothetical protein [Bacillus megaterium QM B1551]
          Length = 259

 Score = 43.3 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 42/132 (31%), Gaps = 12/132 (9%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQI-PVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           AS  K++     F  +    L L + I  + K           L   T+   E+ +  +I
Sbjct: 45  ASTIKLLLAIEAFRQIDEGILALTSVIQRMEKNTVGGAGILRALPRLTHIKVEELLTLMI 104

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT--IYKNASGLHDK---NQITTA 191
             S N  +      +          ++  AK +G++ T         +  +   +  T A
Sbjct: 105 IVSDNTATNELISLVG------FEKINECAKNLGLKKTVLNRYMMDEIAVEKGIDNYTCA 158

Query: 192 RDQAILGILLRK 203
            D       + +
Sbjct: 159 SDVVKCLREIYE 170


>gi|260596740|ref|YP_003209311.1| beta-lactam binding protein AmpH [Cronobacter turicensis z3032]
 gi|260215917|emb|CBA28489.1| Penicillin-binding protein ampH [Cronobacter turicensis z3032]
          Length = 352

 Score = 43.3 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D     ASLTK+MT  ++ + L    + L+   P+S+ A     +++   +         
Sbjct: 47  DSVIRIASLTKLMTSEMLVKMLDQGVVKLDD--PLSRYA--PPGARVPTYQGEPIRLVNL 102


>gi|2293126|gb|AAB68655.1| beta-lactamase [unidentified cloning vector]
 gi|2293129|gb|AAB68657.1| beta-lactamase [unidentified cloning vector]
          Length = 286

 Score = 43.3 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|89099759|ref|ZP_01172632.1| beta-lactamase [Bacillus sp. NRRL B-14911]
 gi|89085506|gb|EAR64634.1| beta-lactamase [Bacillus sp. NRRL B-14911]
          Length = 271

 Score = 43.3 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 71/205 (34%), Gaps = 42/205 (20%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKM--MTLYIIFEYLQSKKLHL 100
           +A  L   P  +S+ ++    +   +     +YPA SL K+  M     F   +   L L
Sbjct: 16  LADILRQCPGNASLAVEY--GERAIYMNSGRKYPAASLIKIPIM--MEAFFQAEEGVLDL 71

Query: 101 NTQIPVS--KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
           + Q+ +   + A      +  L      +    I  +I  S N  +    + +       
Sbjct: 72  SEQVCIGGIEKAGGAGIIQS-LSVTASLSILDCITLMIIVSDNTAANLLIKLLGK----- 125

Query: 159 AILMSNKAKKIGMQNTIY--------KNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
              ++++   +G+Q T+           A G+      TTA D       ++       +
Sbjct: 126 -KNINDRMHGLGLQTTVLGRKMMDFEAAAKGID---NFTTAADMVKCLRAIKD-----GE 176

Query: 211 YFSIRKFRYRNRIITNHNKLLNKMH 235
            FS +          N +K+L+ M 
Sbjct: 177 LFSEK----------NRSKMLDIME 191


>gi|221047950|gb|ACL98082.1| Amp [Expression vector pHsh-amp]
 gi|224611742|gb|ACN60073.1| Amp [Expression Vector pHsh-ex]
          Length = 286

 Score = 43.3 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|3328184|gb|AAC73065.1| beta lactamase precursor [Cloning vector pQE30NST]
 gi|13488584|gb|AAK26193.1| beta-lactamase [Cloning vector pQStrep2]
 gi|34421984|gb|AAQ68222.1| beta-lactamase [Expression vector pPANK]
 gi|37223185|gb|AAQ90186.1| beta lactamase precursor [Cloning vector pQE-30NAST-attB]
 gi|37575402|gb|AAQ93653.1| beta-lactamase [Expression vector pAT222]
 gi|37575407|gb|AAQ93657.1| beta-lactamase [Expression vector pAT223]
 gi|37575411|gb|AAQ93660.1| beta-lactamase [Expression vector pAT224]
 gi|37575415|gb|AAQ93663.1| beta-lactamase [Expression vector pQEMBP]
 gi|37575419|gb|AAQ93666.1| beta-lactamase [Expression vector pAT194]
          Length = 286

 Score = 43.3 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|241912505|gb|ACS71959.1| beta-lactamase [Basidiomycete basal gene deletion vector pDelcas]
          Length = 286

 Score = 43.3 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|112785120|gb|ABI20750.1| TEM extended-spectrum beta-lactamase [Enterococcus gallinarum]
          Length = 286

 Score = 43.3 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|10956148|ref|NP_052129.1| beta-lactamase [Staphylococcus aureus]
 gi|10956150|ref|NP_052130.1| beta-lactamase [Staphylococcus aureus]
 gi|210613207|ref|ZP_03289627.1| hypothetical protein CLONEX_01829 [Clostridium nexile DSM 1787]
 gi|321313692|ref|YP_004205979.1| beta-lactamase TEM [Bacillus subtilis BSn5]
 gi|11266199|pir||T51301 beta-lactamase (EC 3.5.2.6) - fission yeast  (Schizosaccharomyces
           pombe)
 gi|67464382|pdb|1ZG4|A Chain A, Tem1 Beta Lactamase
 gi|4704644|gb|AAD28190.1|AF110459_3 beta-lactamase [Cloning vector pBBR1-GFP]
 gi|4732039|gb|AAD28564.1|AF118921_1 beta-lactamase [alk-system cloning vector pSPZ2Not]
 gi|4959728|gb|AAD34468.1|AF136443_1 beta-lactamase [Cloning vector pUC-TP]
 gi|5006905|gb|AAD37723.1|AF146395_1 beta-lactamase [Cloning vector pCLZip]
 gi|5702092|gb|AAD47138.1|AF061181_2 beta-lactamase [Mammalian expression vector pCI-nGL1-HEGO]
 gi|5733495|gb|AAD49607.1|AF147464_1 beta-lactamase [Expression vector pViet]
 gi|5802284|gb|AAD51639.1|AF170481_2 beta-lactamase [Cloning vector pUC19RP12]
 gi|5802288|gb|AAD51642.1|AF170482_3 beta-lactamase [Cloning vector pST76A-SceP]
 gi|5802293|gb|AAD51646.1|AF170483_4 beta-lactamase [Cloning vector pST98-AS]
 gi|5834245|gb|AAD53875.1|AF174493_1 beta-lactamase [Cloning vector pCL]
 gi|5929924|gb|AAD56648.1|AF178973_3 beta-lactamase [Cloning vector pCS512]
 gi|6318859|gb|AAF07048.1|AF178582_3 beta-lactamase [Expression vector pCS316]
 gi|6318867|gb|AAF07055.1|AF178583_5 beta-lactamase [Expression vector pSB229]
 gi|6457292|gb|AAF09456.1|AF179625_2 Amp [Shuttle vector pCS513]
 gi|6457302|gb|AAF09465.1|AF179626_6 Amp [Expression vector pGP100]
 gi|6457308|gb|AAF09469.1|AF179628_2 Amp [Shuttle vector pHIGEXhOR]
 gi|7108473|gb|AAF36428.1|AF125994_3 beta-lactamase [Shuttle vector pUCP-Nco]
 gi|7108477|gb|AAF36431.1|AF125995_3 beta-lactamase [Shuttle vector pUCP-Nde]
 gi|7637910|gb|AAF65255.1|AF222336_1 beta-lactamase [Cloning vector pTacSfi]
 gi|7715979|gb|AAF68231.1|AF203972_4 Bla [Shuttle vector pBA]
 gi|8037918|gb|AAF71532.1|AF253496_2 beta-lactamase precursor [Cloning vector pUC58]
 gi|9857880|gb|AAG00917.1|AF270470_1 beta-lactamase [Cloning vector pBIG]
 gi|9857883|gb|AAG00919.1|AF269225_1 beta-lactamase [Cloning vector pLITTLE]
 gi|9857886|gb|AAG00921.1|AF269226_1 beta lactamase [Cloning vector pTIKL]
 gi|9857890|gb|AAG00924.1|AF269235_2 beta lactamase [Cloning vector pDXA-GFP2]
 gi|9857894|gb|AAG00927.1|AF269236_2 beta lactamase [Cloning vector pDXA-FLAG]
 gi|9857897|gb|AAG00929.1|AF269237_1 beta lactamase [Cloning vector pTX-GFP]
 gi|9857901|gb|AAG00932.1|AF269238_1 beta lactamase [Cloning vector pTX-FLAG]
 gi|11991617|gb|AAG42304.1|AF305698_1 beta-lactamase [Cloning vector p824]
 gi|12082763|gb|AAG48609.1|AF310245_2 beta-lactamase [Cloning vector pGEM58ZNf(-)]
 gi|12958277|gb|AAK09280.1|AF311601_3 beta-lactamase [Reporter vector pJDL]
 gi|12965139|gb|AAK11473.1|AF334827_2 ampicillin resistance protein [Cloning vector pTurbo-Cre]
 gi|13161002|gb|AAK13448.1|AF325903_2 beta-lactamase [Cloning vector pFH2191]
 gi|13346452|gb|AAK19747.1|AF347016_2 beta-lactamase [Shuttle vector pYT3]
 gi|14009670|gb|AAK51707.1|AF338824_2 beta-lactamase [Cloning vector pVLH/int(+)]
 gi|14009673|gb|AAK51709.1|AF338825_2 beta-lactamase [Cloning vector pHLH/int(+)]
 gi|14039716|gb|AAK53367.1|AF362545_6 beta-lactamase [Co-reporter vector pHRL-TK]
 gi|14039720|gb|AAK53369.1|AF362546_6 beta-lactamase [Co-reporter vector phRL-null]
 gi|14039724|gb|AAK53371.1|AF362547_4 beta-lactamase [Co-reporter vector phRL-TK(Int-)]
 gi|14039728|gb|AAK53373.1|AF362548_6 beta-lactamase [Co-reporter vector phRL-SV40]
 gi|14039732|gb|AAK53375.1|AF362549_6 beta-lactamase [Co-reporter vector phRL-CMV]
 gi|14039736|gb|AAK53377.1|AF362550_6 beta-lactamase [Co-reporter vector phRG-B]
 gi|14039740|gb|AAK53379.1|AF362551_7 beta-lactamase [Co-reporter vector phRG-TK]
 gi|14290103|gb|AAK59252.1|AF379854_2 beta lactamase [Cloning vector pVLH/hsp]
 gi|16904154|gb|AAL30779.1|AF434923_2 beta-lactamase [Expression vector pIE1-LUC]
 gi|16904157|gb|AAL30781.1|AF434924_2 beta-lactamase [Expression vector pACTIN-LUC]
 gi|16904160|gb|AAL30783.1|AF434925_2 beta-lactamase [Expression vector 409-FOR]
 gi|16904163|gb|AAL30785.1|AF434926_2 beta-lactamase [Expression vector 409-MUT]
 gi|16904166|gb|AAL30787.1|AF434927_2 beta-lactamase [Expression vector 410-FOR]
 gi|16904169|gb|AAL30789.1|AF434928_2 beta-lactamase [Expression vector 411-FOR]
 gi|16904172|gb|AAL30791.1|AF434929_2 beta-lactamase [Expression vector 411-MUT]
 gi|16904175|gb|AAL30793.1|AF434930_2 beta-lactamase [Expression vector 412-FOR]
 gi|16904178|gb|AAL30795.1|AF434931_2 beta-lactamase [Expression vector 409-REV]
 gi|16904181|gb|AAL30797.1|AF434932_2 beta-lactamase [Expression vector 410-REV]
 gi|16904184|gb|AAL30799.1|AF434933_2 beta-lactamase [Expression vector 411-REV]
 gi|16904187|gb|AAL30801.1|AF434934_2 beta-lactamase [Expression vector 412-REV]
 gi|16930721|gb|AAL32025.1|AF438749_2 beta-lactamase [Cloning vector pANT841]
 gi|16930724|gb|AAL32027.1|AF438750_2 beta-lactamase [Cloning vector pANT846]
 gi|19550875|gb|AAL91564.1|AF484679_4 beta-lactamase [Cloning vector pRV-9]
 gi|20385950|gb|AAM21517.1|AF438205_3 beta lactamase [Mutation screening vector pSPRX]
 gi|20454204|gb|AAM22212.1|AF502128_2 beta-lactamase [Transient expression vector pBI221]
 gi|21637365|gb|AAM70477.1|AF515846_1 beta-lactamase [Cloning vector pTransgene]
 gi|21780277|gb|AAM77667.1|AF521666_2 beta-lactamase [Cloning vector pLOI2065]
 gi|28628789|gb|AAO49355.1|AF483548_2 beta lactamase [Mammalian expression vector pHyg-EF-2]
 gi|31249538|gb|AAP46190.1|AF515711_3 beta-lactamase [Cloning vector pNRSAL]
 gi|58162|emb|CAA45755.1| beta-lactamase [synthetic construct]
 gi|58165|emb|CAA45753.1| beta-lactamase [synthetic construct]
 gi|58183|emb|CAA46404.1| Beta-lactamase [Cloning vector pGEM-9Zf(-)]
 gi|58185|emb|CAA46417.1| beta-lactamase [Cloning vector pCAT-Basic]
 gi|58189|emb|CAA46416.1| beta-lactamase [Cloning vector pCAT-Control]
 gi|58191|emb|CAA46411.1| beta-lactamase [Cloning vector pCAT-Enhancer]
 gi|58195|emb|CAA46414.1| beta-lactamase [Cloning vector pCAT-Promoter]
 gi|58198|emb|CAA46393.1| Beta-lactamase [Cloning vector pGEM-2]
 gi|58200|emb|CAA46394.1| Beta-lactamase [Cloning vector pGEM-3]
 gi|58206|emb|CAA46395.1| Beta-lactamase [Cloning vector pGEM-4]
 gi|58218|emb|CAA46420.1| beta-lactamase [Cloning vector pGL2-Basic]
 gi|58221|emb|CAA46422.1| beta-lactamase [Cloning vector pGL2-Control]
 gi|58224|emb|CAA46424.1| beta-lactamase [Cloning vector pGL2-Enhancer]
 gi|58227|emb|CAA46426.1| beta-lactamase [Cloning vector pGL2-Promoter]
 gi|58230|emb|CAA46427.1| Beta-lactamase [Cloning vector pSP64]
 gi|58232|emb|CAA46428.1| Beta-lactamase [Cloning vector pSP64 (polyA)]
 gi|58234|emb|CAA46429.1| Beta-lactamase [Cloning vector pSP65]
 gi|58236|emb|CAA46430.1| Beta-lactamase [Cloning vector pSP70]
 gi|58238|emb|CAA46431.1| Beta-lactamase [Cloning vector pSP71]
 gi|58240|emb|CAA46432.1| Beta-lactamase [Cloning vector pSP72]
 gi|58242|emb|CAA46433.1| Beta-lactamase [Cloning vector pSP73]
 gi|58245|emb|CAA46435.1| Beta-lactamase [Cloning vector pSV-beta-Galactosidase Control]
 gi|146582|gb|AAA24057.1| beta-lactamase [Escherichia coli]
 gi|173016|gb|AAA72096.1| putative [Cloning vector pYSVE2]
 gi|208895|gb|AAA72533.1| beta-lactamase [unidentified cloning vector]
 gi|208898|gb|AAA72635.1| beta-lactamase
 gi|387897|gb|AAA72098.1| putative [Cloning vector pYADE4]
 gi|403938|gb|AAB61948.1| pre-beta-lactamase [unidentified cloning vector]
 gi|434647|gb|AAC40207.1| beta-lactamase [Cloning vector pUC1918]
 gi|434651|gb|AAB60533.1| beta-lactamase [Cloning vector pX1918]
 gi|434654|gb|AAC53605.1| beta-lactamase [Cloning vector pZ1918]
 gi|440201|gb|AAA67177.1| beta-lactamase [Cloning vector pUCGM]
 gi|452345|emb|CAA82704.1| beta-lactamase [synthetic construct]
 gi|452347|emb|CAA82705.1| unnamed protein product [synthetic construct]
 gi|453623|emb|CAA54104.1| beta lactamase [synthetic construct]
 gi|453627|emb|CAA54107.1| beta lactamase [synthetic construct]
 gi|455365|gb|AAA73141.1| beta-lactamase [unidentified cloning vector]
 gi|455366|gb|AAA73139.1| beta-lactamase [unidentified cloning vector]
 gi|455367|gb|AAA72527.1| beta-lactamase [Cloning vector pHSG664]
 gi|455371|gb|AAA72687.1| beta-lactamase [unidentified cloning vector]
 gi|460936|gb|AAB40008.1| beta-lactamase [Cloning vector pUCP18]
 gi|460940|gb|AAB40011.1| beta-lactamase [Cloning vector pUCP20]
 gi|460944|gb|AAB40015.1| beta-lactamase [Cloning vector pUCP22]
 gi|469219|dbj|BAA03488.1| beta-lactamase [Cloning vector pKF2]
 gi|499100|gb|AAA73435.1| beta-lactamase [Cloning vector pDB31]
 gi|520998|emb|CAA84692.1| beta lactamase [Enterobacteria phage phiX174]
 gi|531831|gb|AAA73458.1| beta-lactamase [Cloning vector pSport1]
 gi|531835|gb|AAA67219.1| beta-lactamase [Cloning vector pSport2]
 gi|537454|gb|AAA66979.1| beta-lactamase [Cloning vector pSG932]
 gi|537457|gb|AAA66981.1| beta-lactamase [Cloning vector pSG931]
 gi|537460|gb|AAA66983.1| beta-lactamase [Cloning vector pSG930]
 gi|537463|gb|AAA66985.1| beta-lactamase [Cloning vector pSG929]
 gi|537466|gb|AAA66987.1| beta-lactamase [Cloning vector pSG927]
 gi|537469|gb|AAA66989.1| beta-lactamase [Cloning vector pSG928]
 gi|537472|gb|AAA66992.1| beta-lactamase [Cloning vector pSG935]
 gi|537475|gb|AAA66993.1| beta-lactamase [Cloning vector pSG934]
 gi|537478|gb|AAA66995.1| beta-lactamase [Cloning vector pSG933]
 gi|537481|gb|AAA66997.1| beta-lactamase [Cloning vector pSG926]
 gi|537486|gb|AAA66999.1| beta-lactamase [Cloning vector pSG925]
 gi|540253|gb|AAA67265.1| beta-lactamase [Cloning vector pSVSport1]
 gi|559519|emb|CAA57679.1| beta-lactamase [synthetic construct]
 gi|567891|gb|AAA53119.1| beta-lactamase [unidentified cloning vector]
 gi|567894|gb|AAA53121.1| beta-lactamase [unidentified cloning vector]
 gi|575448|gb|AAA67269.1| beta-lactamase [Cloning vector pTRXFUS]
 gi|595704|gb|AAA57085.1| beta-lactamase [unidentified cloning vector]
 gi|595763|gb|AAA56731.1| beta-lactamase [unidentified cloning vector]
 gi|595766|gb|AAA56733.1| beta-lactamase [unidentified cloning vector]
 gi|595769|gb|AAA56735.1| beta-lactamase [unidentified cloning vector]
 gi|595771|gb|AAA56736.1| beta-lactamase [unidentified cloning vector]
 gi|595776|gb|AAA56739.1| beta-lactamase [unidentified cloning vector]
 gi|595778|gb|AAA56740.1| beta-lactamase [unidentified cloning vector]
 gi|595781|gb|AAA56742.1| beta-lactamase [unidentified cloning vector]
 gi|603173|gb|AAA57321.1| beta-lactamase [Cloning vector pUCSce]
 gi|603176|gb|AAA57323.1| beta-lactamase [Cloning vector pEX100T]
 gi|603180|gb|AAA57326.1| beta-lactamase [Cloning vector pX1918G]
 gi|603184|gb|AAA57329.1| beta-lactamase [Cloning vector pX1918GT]
 gi|644833|gb|AAA64568.1| beta-lactamase [Cloning vector pGlac]
 gi|644836|gb|AAA64570.1| beta-lactamase [Cloning vector pGlacRSV]
 gi|682655|gb|AAA74941.1| beta-lactamase [Cloning vector pYEULCBX]
 gi|691758|gb|AAA62619.1| beta-lactamase [Cloning vector YIp351]
 gi|806874|gb|AAA66378.1| beta-lactamase [Cloning vector pLUC/LIC]
 gi|806877|gb|AAA66380.1| beta-lactamase [Cloning vector pBluescript II KS<+>/LIC]
 gi|806880|gb|AAA66382.1| beta-lactamase [Cloning vector pGEM-7Zf<+>/LIC-R]
 gi|806882|gb|AAA66383.1| beta-lactamase [Cloning vector pT7/Nde]
 gi|806888|gb|AAA66385.1| beta-lactamase [Cloning vector pCAT/LIC]
 gi|806891|gb|AAA66387.1| beta-lactamase [Cloning vector pGEM-7Zf<+>/LIC-F]
 gi|806893|gb|AAA66388.1| beta-lactamase [Cloning vector pT7/Nco]
 gi|833824|gb|AAB06693.1| beta-lactamase [Cloning vector pBBR1MCS-4]
 gi|894141|gb|AAA69676.1| beta-lactamase [Cloning vector p35S-GFP]
 gi|915334|gb|AAA85559.1| ampicillin resistance protein [Cloning vector pKMZB]
 gi|984891|gb|AAC53607.1| beta-lactamase [Cloning vector pBSL119]
 gi|984894|gb|AAC53609.1| beta-lactamase [Cloning vector pBSL121]
 gi|984897|gb|AAC53611.1| beta-lactamase [Cloning vector pBSL128]
 gi|984900|gb|AAC53613.1| beta-lactamase [Cloning vector pBSL130]
 gi|984903|gb|AAC53615.1| beta-lactamase [Cloning vector pBSL141]
 gi|984906|gb|AAC53617.1| beta-lactamase [Cloning vector pBSL142]
 gi|984908|gb|AAC53618.1| beta-lactamase [Cloning vector pBSL159]
 gi|984911|gb|AAC53620.1| beta-lactamase [Cloning vector pBSL168]
 gi|984919|gb|AAC53626.1| beta-lactamase [Cloning vector pBSL190]
 gi|984922|gb|AAC53628.1| beta-lactamase [Cloning vector pBSL193]
 gi|984925|gb|AAC53630.1| beta-lactamase [Cloning vector pBSL97]
 gi|984928|gb|AAC53632.1| beta-lactamase [Cloning vector pBSL99]
 gi|984930|gb|AAC53633.1| beta-lactamase [Cloning vector pBSL167]
 gi|988212|gb|AAA96384.1| ampicillin resistance [Cloning vector pAS2-1]
 gi|1016009|gb|AAC33181.1| beta-lactamase [Cloning vector pDAP2]
 gi|1045527|gb|AAB39956.1| beta-lactamase [Staphylococcus aureus]
 gi|1045529|gb|AAB39957.1| beta-lactamase [Staphylococcus aureus]
 gi|1045582|gb|AAA80248.1| beta-lactamase [Cloning vector pHUKH1]
 gi|1045588|gb|AAA80253.1| beta-lactamase [Cloning vector pHUKH2]
 gi|1045594|gb|AAA80258.1| beta-lactamase [Cloning vector pHUKH3]
 gi|1045600|gb|AAA80263.1| beta-lactamase [Cloning vector pHUKH4]
 gi|1049258|gb|AAA80349.1| beta-lactamase [Shuttle vector pAD-GAL4]
 gi|1049261|gb|AAA80351.1| beta-lactamase [Shuttle vector pBD-GAL4]
 gi|1052970|gb|AAA80673.1| beta-lactamase [Cloning vector YRTAG300]
 gi|1073247|gb|AAA81772.1| beta-lactamase [Cloning vector pBVI02]
 gi|1132427|gb|AAA84371.1| beta-lactamase [Cloning vector pTriplEx]
 gi|1144477|gb|AAA86124.1| beta lactamase [Cloning vector pUCP20T]
 gi|1144524|gb|AAA84935.1| beta-lactamase [Cloning vector pI-LINK]
 gi|1150735|gb|AAA85183.1| beta-lactamase [Cloning vector pTAG4]
 gi|1197673|gb|AAA88780.1| beta-lactamase [Cloning vector pCI]
 gi|1197676|gb|AAA88782.1| beta-lactamase [Cloning vector pCI-neo]
 gi|1197678|gb|AAA88783.1| beta-lactamase [Cloning vector pSI]
 gi|1197681|gb|AAA88785.1| beta-lactamase [Cloning vector pSP-luc+]
 gi|1197684|gb|AAA88787.1| beta-lactamase [Cloning vector pSP-luc+NF]
 gi|1200458|gb|AAA89081.1| beta-lactamase [Cloning vector pAdVantage]
 gi|1200461|gb|AAA89083.1| beta-lactamase [Cloning vector pGL3-Basic]
 gi|1200464|gb|AAA89085.1| beta-lactamase [Cloning vector pGL3-Control]
 gi|1200467|gb|AAA89087.1| beta-lactamase [Cloning vector pGL3-Enhancer]
 gi|1200470|gb|AAA89089.1| beta-lactamase [Cloning vector pGL3-Promoter]
 gi|1200492|gb|AAA89091.1| beta-lactamase [Cloning vector PinPoint Xa-1]
 gi|1200495|gb|AAA89093.1| beta-lactamase [Cloning vector PinPoint Xa-2]
 gi|1200498|gb|AAA89095.1| beta-lactamase [Cloning vector PinPoint Xa-3]
 gi|1228976|emb|CAA65432.1| beta-lactamase [synthetic construct]
 gi|1228978|emb|CAA65428.1| beta-lactamase [synthetic construct]
 gi|1228980|emb|CAA65429.1| beta-lactamase [synthetic construct]
 gi|1277159|gb|AAB08400.1| beta-lactamase [Expression vector pNEX]
 gi|1277161|gb|AAB08055.1| beta-lactamase [Expression vector pNEX delta]
 gi|1335983|gb|AAB01196.1| beta-lactamase [Cloning vector pVP-Nco]
 gi|1335986|gb|AAB01198.1| beta-lactamase [Cloning vector pVP-HA1]
 gi|1335989|gb|AAB01200.1| beta-lactamase [Cloning vector pVP-HA2]
 gi|1335992|gb|AAB01202.1| beta-lactamase [Cloning vector pVP-HA3]
 gi|1335995|gb|AAB01204.1| beta-lactamase [Cloning vector pVP-FLAG]
 gi|1345435|dbj|BAA12825.1| beta-lactamase [Cloning vector pBEN66]
 gi|1354499|gb|AAB07867.1| beta-lactamase [Cloning vector pCI-nGFP-C656G]
 gi|1373275|gb|AAB02236.1| beta lactamase [Cloning vector pODB8]
 gi|1377903|gb|AAB02569.1| beta-lactamase [Baculovirus transfer vector pBacPAK-His1]
 gi|1377905|gb|AAB02570.1| beta-lactamase [Baculovirus transfer vector pBacPAK-His2]
 gi|1377907|gb|AAB02571.1| beta-lactamase [Baculovirus transfer vector pBacPAK-His3]
 gi|1399734|gb|AAB39972.1| beta-lactamase [Reporter vector pCAT3-Basic vector]
 gi|1399737|gb|AAB39974.1| beta-lactamase [Reporter vector pCAT3-Control vector]
 gi|1399740|gb|AAB39976.1| beta-lactamase [Reporter vector pCAT3-Enhancer vector]
 gi|1399743|gb|AAB39978.1| beta-lactamase [Reporter vector pCAT3-Promoter vector]
 gi|1488685|gb|AAC53681.1| beta-lactamase [Recombination vector pAdlox]
 gi|1490530|gb|AAB06049.1| beta-lactamase [Cloning vector pGFPuv]
 gi|1515458|gb|AAC12960.1| beta-lactamase [Cloning vector pOPRSVIMCS]
 gi|1527193|gb|AAB88908.1| beta-lactamase [Expression vector pESP-I]
 gi|1561768|gb|AAB08871.1| beta-lactamase [Expression vector pNEX2]
 gi|1561770|gb|AAB08872.1| beta-lactamase [Expression vector pNEX3]
 gi|1595818|gb|AAB49942.1| AmpR [Cloning vector pGBD-C1]
 gi|1595822|gb|AAB49945.1| AmpR [Cloning vector pGBD-C2]
 gi|1595826|gb|AAB49948.1| AmpR [Cloning vector pGBD-C3]
 gi|1595830|gb|AAB49951.1| AmpR [Cloning vector pGBDU-C1]
 gi|1595834|gb|AAB49954.1| AmpR [Cloning vector pGBDU-C2]
 gi|1595838|gb|AAB49957.1| AmpR [Cloning vector pGBDU-C3]
 gi|1595842|gb|AAB49960.1| AmpR [Cloning vector pGAD-C1]
 gi|1595846|gb|AAB49963.1| AmpR [Cloning vector pGAD-C2]
 gi|1595850|gb|AAB49966.1| AmpR [Cloning vector pGAD-C3]
 gi|1649039|gb|AAB17670.1| beta-lactamase [Cloning Vector pJF5]
 gi|1680652|gb|AAC44581.1| beta-lactamase [Methylobacillus sp. KT1]
 gi|1684625|emb|CAA70547.1| blaTEM [synthetic construct]
 gi|1684628|emb|CAA70549.1| blaTEM [synthetic construct]
 gi|1685275|gb|AAB36779.1| beta-lactamase [Assembly vector pNOMAD1]
 gi|1685277|gb|AAB36780.1| beta-lactamase [Assembly vector pNOMAD2]
 gi|1698775|gb|AAB37298.1| beta-lactamase [Cloning vector pZGT5]
 gi|1724063|gb|AAC53676.1| beta-lactamase [Cloning vector pRAY-1]
 gi|1769872|emb|CAA71018.1| beta-lactamase [unidentified cloning vector]
 gi|1769879|emb|CAA71022.1| beta-lactamase [unidentified cloning vector]
 gi|1834348|emb|CAA71925.1| beta-lactamase [synthetic construct]
 gi|1834351|emb|CAA71923.1| beta-lactamase [synthetic construct]
 gi|1842042|gb|AAB91427.1| beta-lactamase [Expression vector pESP-2]
 gi|1899164|gb|AAB49977.1| beta-lactamase [unidentified cloning vector]
 gi|1899168|gb|AAB49980.1| beta-lactamase [unidentified cloning vector]
 gi|1899171|gb|AAB49982.1| beta-lactamase [unidentified cloning vector]
 gi|1902779|dbj|BAA19239.1| beta-lactamase [Cloning vector pBEN77]
 gi|1902897|dbj|BAA19465.1| beta-lactamase [Cloning vector pBEN70]
 gi|2058307|emb|CAA73226.1| beta lactamase [Escherichia coli K-12]
 gi|2071946|gb|AAB53628.1| beta-lactamase [Expression vector pBSII-LUCINT]
 gi|2190697|gb|AAB64384.1| beta-lactamase [unidentified cloning vector]
 gi|2190702|gb|AAB64387.1| beta-lactamase [unidentified cloning vector]
 gi|2190705|gb|AAB64389.1| beta-lactamase [unidentified cloning vector]
 gi|2190708|gb|AAB64391.1| beta-lactamase [unidentified cloning vector]
 gi|2190710|gb|AAB64392.1| beta-lactamase [unidentified cloning vector]
 gi|2190713|gb|AAB64394.1| beta-lactamase [unidentified cloning vector]
 gi|2190715|gb|AAB64395.1| beta-lactamase [unidentified cloning vector]
 gi|2190719|gb|AAB64398.1| beta-lactamase [unidentified cloning vector]
 gi|2190724|gb|AAB64401.1| beta-lactamase [unidentified cloning vector]
 gi|2190727|gb|AAB64403.1| beta-lactamase [unidentified cloning vector]
 gi|2190730|gb|AAB64405.1| beta-lactamase [unidentified cloning vector]
 gi|2190733|gb|AAB64407.1| beta-lactamase [unidentified cloning vector]
 gi|2208942|emb|CAA73316.1| lactamase [synthetic construct]
 gi|2218118|gb|AAC33183.1| beta-lactamase [synthetic construct]
 gi|2218121|gb|AAC33185.1| beta-lactamase [synthetic construct]
 gi|2218145|gb|AAB61669.1| beta-lactamase [Cloning vector pEX18T]
 gi|2239040|emb|CAA73270.1| lactamase [synthetic construct]
 gi|2267565|gb|AAB63580.1| beta lactamase [DNA-binding vector pODB80]
 gi|2281527|gb|AAB65664.1| beta-lactamase [Cloning vector pGFPCR]
 gi|2293132|gb|AAB68659.1| ampicillin resistance [unidentified cloning vector]
 gi|2342751|gb|AAB67757.1| beta-lactamase [Shuttle vector pSEmp18BBXM]
 gi|2353793|gb|AAB68846.1| beta-lactamase [Cloning vector pUC-JK]
 gi|2358011|gb|AAB68952.1| beta-lactamase [Cloning vector pGR8]
 gi|2440158|emb|CAA75107.1| beta-lactamase [Phagemid cloning vector pTZ19R]
 gi|2440161|emb|CAA75109.1| beta-lactamase [Phagemid cloning vector pTZ19U]
 gi|2462914|emb|CAA74920.1| lactamase [synthetic construct]
 gi|2462916|emb|CAA74921.1| lactamase [synthetic construct]
 gi|2462920|emb|CAA74926.1| beta lactamase [synthetic construct]
 gi|2522427|gb|AAB81041.1| beta-lactamase [Cloning vector pWSK29]
 gi|2582511|gb|AAB82574.1| beta-lactamase [Co-reporter vector pRL-CMV]
 gi|2582514|gb|AAB82576.1| beta-lactamase [Co-reporter vector pRL-Null]
 gi|2582517|gb|AAB82578.1| beta-lactamase [Co-reporter vector pRL-SV40]
 gi|2582520|gb|AAB82580.1| beta-lactamase [Co-reporter vector pRL-TK]
 gi|2598099|gb|AAB83988.1| beta-lactamase [Expression vector pLUC+]
 gi|2598102|gb|AAB83990.1| beta-lactamase [Expression vector pTATALUC+]
 gi|2598105|gb|AAB83992.1| beta-lactamase [Expression vector ptkLUC+]
 gi|2598108|gb|AAB83994.1| beta-lactamase [Expression vector pCMVtkLUC+]
 gi|2623119|gb|AAC53719.1| beta-lactamase [Expression vector pIB1]
 gi|2623122|gb|AAC53721.1| beta-lactamase [Expression vector pIB2]
 gi|2623125|gb|AAC53723.1| beta-lactamase [Expression vector pIB3]
 gi|2623128|gb|AAC53725.1| beta-lactamase [Expression vector pIB4]
 gi|2623974|emb|CAA05682.1| beta-lactamase [synthetic construct]
 gi|2623980|emb|CAA05685.1| beta-lactamase [synthetic construct]
 gi|2623982|emb|CAA05686.1| beta-lactamase [synthetic construct]
 gi|2623986|emb|CAA05689.1| beta-lactamase [synthetic construct]
 gi|2654778|gb|AAB88045.1| pre-beta-lactamase [Phagemid cloning vector pATCH1]
 gi|2656022|dbj|BAA23652.1| beta-lactamase [Cloning vector pAP3neo]
 gi|2739059|gb|AAC31621.1| beta-lactamase [Cloning vector pUC-GM-INT]
 gi|2739065|gb|AAC31624.1| beta-lactamase [unidentified cloning vector]
 gi|2739069|gb|AAC31627.1| beta-lactamase [unidentified cloning vector]
 gi|2769263|emb|CAA04868.1| beta-lactamase [Escherichia coli]
 gi|2801656|gb|AAC40217.1| beta-lactamase [Cloning vector yGALset351]
 gi|2801658|gb|AAC40218.1| beta-lactamase [Cloning vector yGALset352]
 gi|2801660|gb|AAC40219.1| beta-lactamase [Cloning vector yGALset401]
 gi|2801662|gb|AAC40220.1| beta-lactamase [Cloning vector yGALset983]
 gi|2801664|gb|AAC40221.1| beta-lactamase [Cloning vector yGALset984]
 gi|2801666|gb|AAC40222.1| beta-lactamase [Cloning vector yGALset985]
 gi|2852396|gb|AAC40209.1| beta-lactamase [Cloning vector pBIOTRX-BirA]
 gi|2961157|gb|AAC27034.1| beta lactamase [site-specific excision vector pFLP2]
 gi|2981188|gb|AAC78772.1| beta-lactamase [Expression vector pYZ1N]
 gi|2981193|gb|AAC78776.1| beta-lactamase [Expression vector pYZ3N-GFP]
 gi|3002524|gb|AAC08735.1| ampicillin resistance protein [Expression vector pRIBOTEX]
 gi|3025716|gb|AAC12727.1| B-lactamase [Cloning vector pVLH-1]
 gi|3108235|gb|AAC15801.1| ampicillin resistance protein [Eukaryotic expression vector
           pCR3.1mBCL-XL]
 gi|3114618|gb|AAD08914.1| ampicillin resistance protein [Cloning vector pFR-Luc]
 gi|3123922|gb|AAC40215.1| beta-lactamase [Reporter vector p2luc]
 gi|3136319|gb|AAC78829.1| beta-lactamase [Expression vector pYZ41N]
 gi|3136323|gb|AAC78832.1| beta-lactamase [Expression vector pYZ81N]
 gi|3243010|gb|AAC23868.1| beta-lactamase [Expression vector pBEVY-A]
 gi|3243013|gb|AAC23870.1| beta-lactamase [Expression vector pBEVY-GA]
 gi|3243016|gb|AAC23872.1| beta-lactamase [Expression vector pBEVY-GL]
 gi|3243018|gb|AAC23873.1| beta-lactamase [Expression vector pBEVY-GT]
 gi|3243021|gb|AAC23875.1| beta-lactamase [Expression vector pBEVY-GU]
 gi|3243024|gb|AAC23877.1| beta-lactamase [Expression vector pBEVY-L]
 gi|3243027|gb|AAC23879.1| beta-lactamase [Expression vector pBEVY-T]
 gi|3243030|gb|AAC23881.1| beta-lactamase [Expression vector pBEVY-U]
 gi|3273768|gb|AAC24837.1| ampicillin resistance protein [Cloning vector PCMV6-XL4]
 gi|3273770|gb|AAC24838.1| ampicillin resistance protein [Cloning vector PCMV6-XL3]
 gi|3435309|gb|AAC32394.1| beta-lactamase [Expression vector pSKAP/S]
 gi|3808122|emb|CAA09781.1| beta-lactamase [Promoter search vector pME4507]
 gi|3834581|gb|AAC72101.1| beta-lactamase [Dual pho-lac fusion vector pMA632]
 gi|3882023|emb|CAA77108.1| beta lactamase [Expression vector pSTE2-215(Yol)]
 gi|4028600|gb|AAC97515.1| beta-lactamase [Cloning vector pHR'-CMVLacZ]
 gi|4097014|gb|AAD10134.1| beta-lactamase [Expression vector pBMRz]
 gi|4097016|gb|AAD10135.1| beta-lactamase [Expression vector pBRz]
 gi|4097018|gb|AAD10136.1| beta-lactamase [Expression vector pB5T-MRz]
 gi|4097020|gb|AAD10137.1| beta-lactamase [Expression vector pB10T-MRz]
 gi|4210486|gb|AAD11973.1| beta-lactamase [Cloning vector pFR-Bgal]
 gi|4379389|emb|CAA75111.1| beta-lactamase [Cloning vector pUC57]
 gi|4455912|emb|CAB37331.1| beta-lactamase [Cloning vector pU6H2MYC]
 gi|4455915|emb|CAB37333.1| beta-lactamase [Cloning vector pU6H3HA]
 gi|4455918|emb|CAB37335.1| beta-lactamase [Cloning vector pU6H3VSV]
 gi|5354162|gb|AAD42380.1| beta-lactamase [Cloning vector pCMV-AD]
 gi|5420150|emb|CAA46406.2| beta-lactamase [Cloning vector pGEM-13Zf(+)]
 gi|5420375|emb|CAA46405.2| Beta-lactamase [Cloning vector pGEM-11Zf(+)]
 gi|5441564|emb|CAB46857.1| Beta-lactamase [Cloning vector pGEM-11Zf(-)]
 gi|5531233|emb|CAA46398.2| beta-lactamase [Cloning vector pGEM-3Zf(+)]
 gi|5640090|emb|CAB51568.1| beta-lactamase [Expression vector pCDPT]
 gi|5701826|emb|CAA46400.2| Beta-lactamase [Cloning vector pGEM-5Zf(+)]
 gi|5758123|gb|AAD50688.1| beta-lactamase [Cloning vector pUNI(Amp)]
 gi|5758125|gb|AAD50689.1| beta-lactamase [Cloning vector pUNI(Amp)-MYC3]
 gi|5758127|gb|AAD50690.1| beta-lactamase [Cloning vector pUNI(Amp)-HA3]
 gi|5758129|gb|AAD50691.1| beta-lactamase [Cloning vector pUNI(Amp)-GFP]
 gi|5758131|gb|AAD50692.1| beta-lactamase [Cloning vector pUNI(Amp)-GST]
 gi|5758133|gb|AAD50693.1| beta-lactamase [Cloning vector pUNI(Amp)-DBD]
 gi|5758135|gb|AAD50694.1| beta-lactamase [Cloning vector pUNI(Amp)-AD]
 gi|6010469|gb|AAF01143.1| beta-lactamase [Integrative vector pWLG11]
 gi|6010472|gb|AAF01145.1| beta-lactamase [Integrative expression vector pWLG13]
 gi|6010475|gb|AAF01147.1| beta-lactamase [Integrative expression vector pWLG14]
 gi|6010478|gb|AAF01149.1| beta-lactamase [Expression shuttle vector pWLG30]
 gi|6457347|gb|AAF09486.1| beta lactamase [Cloning vector pTEX-Z]
 gi|6467481|gb|AAF13157.1| ampicillin-resistance protein [Integration vector pLOI2223]
 gi|6467487|gb|AAF13160.1| ampicillin-resistance protein [Integration vector pLOI2226]
 gi|6687357|emb|CAA46403.2| Beta-lactamase [Cloning vector pGEM-7Zf(-)]
 gi|6782313|emb|CAA46396.2| beta-lactamase [Cloning vector pGEM-3Z]
 gi|6782315|emb|CAA46397.2| beta-lactamase [Cloning vector pGEM-4Z]
 gi|6822255|emb|CAB70976.1| beta-lactamase [Synechocystis promoter probe vector pIGA]
 gi|6901347|emb|CAB71924.1| beta-lactamase [Synechocystis promoter probe vector pILA]
 gi|7340793|emb|CAA08827.1| beta-lactamase [synthetic construct]
 gi|7380885|dbj|BAA93041.1| beta-lactamase [Shuttle vector pRES19]
 gi|7799032|emb|CAB90821.1| beta-lactamase [Cloning vector pKID18]
 gi|7799035|emb|CAB90823.1| beta-lactamase [Cloning vector pKID19]
 gi|8050588|gb|AAF71714.1| beta-lactamase [Cloning vector pUC21]
 gi|8216947|emb|CAA46399.2| Beta-lactamase [Cloning vector pGEM-3Zf(-)]
 gi|8216949|emb|CAA46401.2| Beta-lactamase [Cloning vector pGEM-5Zf(-)]
 gi|8216951|emb|CAA46402.2| Beta-lactamase [Cloning vector pGEM-7Zf(+)]
 gi|8216953|emb|CAA46409.2| Beta-lactamase [Cloning vector pGEMEX-1]
 gi|8216955|emb|CAA46410.2| Beta-lactamase [Cloning vector pGEMEX-2]
 gi|8250169|emb|CAA46408.2| Beta-lactamase [Cloning vector pGEM-luc]
 gi|8272486|gb|AAF74222.1| beta-lactamase [Shuttle vector pPha-T1]
 gi|8346633|emb|CAB93899.1| penicillin beta-lactamase [Artificial vector pLoxCat2]
 gi|8346636|emb|CAB93901.1| penicillin beta-lactamase [Artificial vector pLoxGen4]
 gi|8346639|emb|CAB93903.1| penicillin beta-lactamase [Artificial vector pLoxKan2]
 gi|8346642|emb|CAB93905.1| penicillin beta-lactamase [Artificial vector pLoxCat4]
 gi|8843953|gb|AAF80182.1| beta-lactamase precursor [Expression vector pSB2991]
 gi|9587165|gb|AAF89183.1| beta-lactamase [Cloning Vector pACT]
 gi|9587170|gb|AAF89187.1| beta-lactamase [Cloning Vector pG5luc]
 gi|10504975|gb|AAG18332.1| beta-lactamase [Cloning vector pUC6S]
 gi|11061109|emb|CAC14452.1| penicillin beta-lactamase [Cloning vector pBPSCat2]
 gi|11061116|emb|CAC14455.1| penicillin beta-lactamase [Cloning vector pBPSGen4]
 gi|11061122|emb|CAC14458.1| penicillin beta-lactamase [Cloning vector pBPSKan2]
 gi|11344868|gb|AAG34513.1| ampicillin resistance protein [PCR template vector pUG30]
 gi|11344872|gb|AAG34516.1| ampicillin resistance protein [recombinase expression vector pSH47]
 gi|11344876|gb|AAG34519.1| ampicillin resistance protein [C-terminal GFP fusion vector pUG23]
 gi|11344880|gb|AAG34522.1| ampicillin resistance protein [N-terminal GFP fusion vector pUG34]
 gi|11344884|gb|AAG34525.1| ampicillin resistance protein [recombinase expression vector pSH62]
 gi|11344887|gb|AAG34527.1| ampicillin resistance protein [Cloning vector pUG26]
 gi|11344891|gb|AAG34530.1| ampicillin resistance protein [C-terminal GFP fusion vector pUG35]
 gi|11344894|gb|AAG34532.1| ampicillin resistance protein [PCR template vector pJJH726]
 gi|11344898|gb|AAG34535.1| ampicillin resistance protein [recombinase expression vector pSH63]
 gi|11344901|gb|AAG34537.1| ampicillin resistance protein [PCR template vector pUG27]
 gi|11344905|gb|AAG34540.1| ampicillin resistance protein [N-terminal GFP fusion vector pUG36]
 gi|11344908|gb|AAG34542.1| ampicillin resistance protein [PCR template vector pJJH727]
 gi|11344911|gb|AAG34544.1| ampicillin resistance protein [PCR template vector pUG6]
 gi|11344914|gb|AAG34546.1| ampicillin resistance protein [PCR template vector pUG66]
 gi|11344917|gb|AAG34548.1| ampicillin resistance protein [Cloning vector pUG7]
 gi|11344920|gb|AAG34550.1| ampicillin resistance protein [recombinase expression vector pSH65]
 gi|12034710|gb|AAG45963.1| beta lactamase [Expression vector AF286076]
 gi|12034713|gb|AAG45964.1| beta lactamase [Expression vector AF286077]
 gi|12584847|gb|AAG59856.1| beta-lactamase [Cloning vector pSGHV0]
 gi|12698838|gb|AAK01700.1| ampicillin resistance protein [Cloning vector pExchange 1]
 gi|12698840|gb|AAK01701.1| ampicillin resistance protein [Expression vector pExchange 2]
 gi|12698915|gb|AAK01733.1| ampicillin resistance protein [Envelope expression vector pVpack
           10A1]
 gi|12831144|gb|AAK08491.1| beta-lactamase [HIV-1 vector pNL4-3]
 gi|13027703|gb|AAK08634.1| beta-lactamase [Integration vector pINT]
 gi|13236870|gb|AAK16201.1| beta-lactamase [Cloning vector pUC13]
 gi|13345298|gb|AAK19284.1| beta-lactamase [Cloning vector pPOP]
 gi|13508479|gb|AAK27302.1| beta-lactamase [Binary vector pPAM]
 gi|14456626|emb|CAC41115.1| beta lactamase [Cloning vector pGRL2]
 gi|14517315|gb|AAK62568.1| beta-lactamase [Cloning vector pJAP8]
 gi|14594738|emb|CAC40642.1| beta lactamase [Cloning vector pGRU1]
 gi|14594742|emb|CAC40631.1| beta lactamase [Cloning vector pGRU3]
 gi|14594746|emb|CAC40624.1| beta lactamase [Cloning vector pGRU2]
 gi|14594750|emb|CAC40617.1| beta lactamase [Cloning vector pGIL2]
 gi|14594754|emb|CAC40627.1| beta lactamase [Cloning vector pGRL3]
 gi|14594758|emb|CAC41106.1| beta lactamase [Cloning vector pGIU3]
 gi|14594762|emb|CAC41120.1| beta lactamase [Cloning vector pGIU1]
 gi|14594766|emb|CAC41097.1| beta lactamase [Cloning vector pGIL3]
 gi|14594770|emb|CAC41112.1| beta lactamase [Cloning vector pGIL1]
 gi|14594774|emb|CAC41100.1| beta lactamase [Cloning vector pGRL1]
 gi|14594796|emb|CAC40620.1| beta lactamase [Cloning vector pGIU2]
 gi|14994092|gb|AAK76420.1| beta-lactamase [Cloning vector pAAV-RC]
 gi|14994095|gb|AAK76422.1| beta-lactamase [Cloning vector pAAV-LacZ]
 gi|14994097|gb|AAK76423.1| beta-lactamase [Cloning vector pHelper]
 gi|14994099|gb|AAK76424.1| beta-lactamase [Cloning vector pCMV-MCS]
 gi|15072759|emb|CAC47941.1| beta-lactamase [Cloning vector pHCMV-LCMV-GP(WE-HPI)]
 gi|15072762|emb|CAC47943.1| beta-lactamase [Cloning vector pHCMV-LCMV-GP(WE)]
 gi|15072765|emb|CAC47945.1| beta-lactamase [Cloning vector pHCMV-VSV-G]
 gi|15072768|emb|CAC47947.1| beta-lactamase [Cloning vector pHCMV-A-MLVenv]
 gi|15148787|gb|AAK84839.1| beta-lactamase [Cloning vector pAAV-MCS]
 gi|15554331|gb|AAL02034.1| beta-lactamase [Template plasmid pKD3]
 gi|15554334|gb|AAL02036.1| beta-lactamase [Template plasmid pKD4]
 gi|15554337|gb|AAL02038.1| beta-lactamase [Template plasmid pKD13]
 gi|15554344|gb|AAL02044.1| beta-lactamase [Red recombinase plasmid pKD20]
 gi|15554351|gb|AAL02050.1| beta-lactamase [Red recombinase plasmid pKD46]
 gi|15982215|emb|CAC86250.1| ampicillin resistance protein [Cloning vector pHANNIBAL]
 gi|16118710|gb|AAL14558.1| beta-lactamase [Cloning vector pCNS]
 gi|16209074|gb|AAL09851.1| bla [CRIM helper plasmid pAH57]
 gi|16209080|gb|AAL09854.1| bla [CRIM plasmid pAH68]
 gi|16209085|gb|AAL09858.1| bla [CRIM helper plasmid pAH69]
 gi|16209091|gb|AAL09861.1| bla [CRIM plasmid pAH81]
 gi|16209097|gb|AAL09866.1| bla [CRIM helper plasmid pAH83]
 gi|16209116|gb|AAL09878.1| bla [CRIM helper plasmid pAH122]
 gi|16209123|gb|AAL09882.1| bla [CRIM helper plasmid pAH123]
 gi|16209130|gb|AAL09887.1| bla [CRIM helper plasmid pAH129]
 gi|16209135|gb|AAL09891.1| bla [CRIM helper plasmid pAH130]
 gi|16209142|gb|AAL09896.1| bla [CRIM helper plasmid pAH131]
 gi|16209185|gb|AAL09918.1| bla [CRIM helper plasmid pINT-ts]
 gi|17530180|gb|AAL40736.1| beta-lactamase [synthetic construct]
 gi|17530183|gb|AAL40738.1| beta-lactamase [synthetic construct]
 gi|17530187|gb|AAL40741.1| beta-lactamase [synthetic construct]
 gi|18140171|gb|AAL59003.1| beta-lactamase [Expression vector pFHC2101]
 gi|18252135|gb|AAL61982.1| beta lactamase Bla [Expression vector pANT1200]
 gi|18766964|gb|AAL79197.1| beta-lactamase [Cloning vector pNOT218]
 gi|18997121|gb|AAL83302.1| AmpR [Expression vector pCMVTNT(TM)]
 gi|18997125|gb|AAL83304.1| AmpR [Expression vector pTNT(TM)]
 gi|22000952|gb|AAM82291.1| beta-lactamase [Transposon delivery vector pSC189]
 gi|22001015|gb|AAM82246.1| beta lactamase [Expression vector pCMH148]
 gi|22001017|gb|AAM82247.1| beta lactamase [Expression vector pCMH149]
 gi|22347654|gb|AAM95950.1| beta-lactamase [Cloning vector pDblet]
 gi|22651572|gb|AAM19718.1| beta-lactamase [Allelic exchange vector pCM184]
 gi|22651576|gb|AAM19721.1| beta-lactamase [Allelic exchange vector pCM351]
 gi|23429673|gb|AAM98715.1| B-lactamase [cloning vector pSM565]
 gi|23821170|emb|CAD53306.1| beta-lactamase [Cloning vector pDXA-3hygro]
 gi|23821173|emb|CAD53308.1| beta-lactamase [Cloning vector pDXA-CFP]
 gi|23821177|emb|CAD53311.1| beta-lactamase [Cloning vector pDXA-yFP]
 gi|23821181|emb|CAD53292.1| beta-lactamase [Cloning vector pDXA-CFP-MCS]
 gi|23821185|emb|CAD53295.1| beta-lactamase [Cloning vector pDXA-YFP-MCS]
 gi|23821189|emb|CAD53298.1| beta-lactamase [Cloning vector pDXA-YFP-NotI]
 gi|23821193|emb|CAD53301.1| beta-lactamase [Cloning vector pDXA-MCS-YFP]
 gi|23821197|emb|CAD53304.1| beta-lactamase [Cloning vector pDXA-3strep]
 gi|23821200|emb|CAD53314.1| beta-lactamase [Cloning vector pDXA-3FLAG]
 gi|23821203|emb|CAD53316.1| beta-lactamase [Cloning vector pDXA-GST]
 gi|25990176|gb|AAN74641.1| beta-lactamase [Cloning vector pCAT-3']
 gi|27524898|emb|CAC87990.1| beta-lactamase [Binary cloning vector pAC161]
 gi|27652164|gb|AAO17064.1| beta lactamase [synthetic construct]
 gi|27803715|gb|AAO21932.1| beta-lactamase [Expression vector pYPX251]
 gi|28170641|emb|CAD61222.1| ampicillin resistance protein [synthetic construct]
 gi|28170644|emb|CAD61224.1| ampicillin resistance protein [synthetic construct]
 gi|28394602|gb|AAO38722.1| beta-lactamase [Expression vector pYPX4062]
 gi|28395448|gb|AAO39006.1| beta-lactamase [Cloning vector pFabZip1]
 gi|28412262|gb|AAO39982.1| beta-lactamase [Shuttle vector pSOS96]
 gi|28412269|gb|AAO39988.1| beta-lactamase [Shuttle vector pSOS94]
 gi|28412276|gb|AAO39994.1| beta-lactamase [Shuttle vector pSOS95]
 gi|28864236|gb|AAO48590.1| beta-lactamase [Expression vector pBS-35S-Rluc]
 gi|28864239|gb|AAO48592.1| beta-lactamase [Expression vector pBS-35S-YFP]
 gi|28864242|gb|AAO48594.1| beta-lactamase [Expression vector pBS-35S-Ala-Rluc]
 gi|28864245|gb|AAO48596.1| beta-lactamase [Expression vector pBS-35S-Rluc-Ala]
 gi|28864248|gb|AAO48598.1| beta-lactamase [Expression vector pBS-35S-Ala-YFP]
 gi|28864251|gb|AAO48600.1| beta-lactamase [Expression vector pBS-35S-YFP-Ala]
 gi|28883210|gb|AAO43181.1| B-lactamase [Monster GFP vector phMGFP]
 gi|29150586|gb|AAO63173.1| beta-lactamase [Cloning vector pHRGFPTC]
 gi|29150591|gb|AAO63177.1| beta-lactamase [Cloning Vector pHRGFPGUS]
 gi|29335745|emb|CAD83082.1| beta lactamase [Transfection vector pBTdest]
 gi|29367641|gb|AAO83380.1| beta-lactamase [Expression vector pHA-SP]
 gi|29415433|gb|AAO12753.1| beta-lactamase [CRIM plasmid pKD15]
 gi|29415714|gb|AAO12757.1| beta-lactamase [CRIM plasmid pKD16]
 gi|29423756|gb|AAO73815.1| beta-lactamase [Expression vector pNEX delta R]
 gi|29468589|gb|AAO48722.1| beta-lactamase [Cloning vector pVCDcDL3]
 gi|29468596|gb|AAO48715.1| beta-lactamase [Cloning vector pVCDcDL1]
 gi|29469037|gb|AAO49810.1| beta-lactamase [Expression vector pNEX delta F]
 gi|29650762|gb|AAO86501.1| beta lactamase precursor [Cloning vector pQTEV]
 gi|29825789|gb|AAO92324.1| beta lactamase [cloning vector pAM2600]
 gi|29837144|dbj|BAC75545.1| beta-lactamase [Cloning vector pXcmkn12]
 gi|30014057|gb|AAO92241.1| beta-lactamase [Cloning vector pHR3-km]
 gi|30014063|gb|AAO92246.1| beta-lactamase [Cloning vector pHR28A10]
 gi|30025559|gb|AAP04592.1| beta-lactamase [Cloning vector pHR50]
 gi|30039624|gb|AAP06957.1| beta-lactamase [Expression vector pMH]
 gi|30424553|gb|AAO24788.1| ampicillin resistance determinant [Shuttle vector pSK5632]
 gi|30523398|gb|AAP31915.1| beta-lactamase [Cloning vector pHRE1-km]
 gi|30984056|gb|AAP41141.1| beta-lactamase [Cloning vector pHRBar-6]
 gi|31415495|gb|AAP44987.1| beta-lactamase [Shuttle vector pNG168]
 gi|32140409|gb|AAP69524.1| beta lactamase [Transposition vector RescueMu]
 gi|32351113|gb|AAP75626.1| beta-lactamase [Insertional cloning vector pCM168]
 gi|32351119|gb|AAP75631.1| beta-lactamase [Insertional expression vector pCM172]
 gi|32455183|gb|AAP83302.1| beta-lactamase [Luciferase reporter vector pCBR-Basic]
 gi|32455186|gb|AAP83304.1| beta-lactamase [Luciferase reporter vector pCBR-Control]
 gi|32455189|gb|AAP83306.1| beta-lactamase [Luciferase reporter vector pCBG68-Basic]
 gi|32455192|gb|AAP83308.1| beta-lactamase [Luciferase reporter vector pCBG68-Control]
 gi|32455195|gb|AAP83310.1| beta-lactamase [Luciferase reporter vector pCBG99-Basic]
 gi|32455199|gb|AAP83313.1| beta-lactamase [Luciferase reporter vector pCBG99-Control]
 gi|33149673|gb|AAP96917.1| beta-lactamase [Cloning vector pT3]
 gi|33520708|gb|AAQ21189.1| beta-lactamase [Reporter vector pGUSA]
 gi|37575399|gb|AAQ93651.1| beta-lactamase [Ribosome display vector pRDV]
 gi|37623890|gb|AAQ95605.1| mutant extended-spectrum beta-lactamase precursor [Escherichia
           coli]
 gi|37654590|gb|AAQ96625.1| beta lactamase [CFP Integration vector pSMUC2+]
 gi|37654594|gb|AAQ96628.1| beta lactamase [YFP Integration vector pSMUY2+]
 gi|37654598|gb|AAQ96631.1| beta lactamase [Degron tagging vector pSMUG2+]
 gi|37654602|gb|AAQ96634.1| beta lactamase [Degron tagging vector pSMRG2+]
 gi|37812659|gb|AAR04147.1| beta lactamase [UAS-less reporter vector pMELbeta]
 gi|37812665|gb|AAR04151.1| beta lactamase [UAS-less reporter vector YIpMELbeta2]
 gi|37812670|gb|AAR04155.1| beta lactamase [UAS-less reporter vector YIpMELbeta]
 gi|37812672|gb|AAR04156.1| beta lactamase [UAS-less reporter vector YIpMELalpha]
 gi|37812680|gb|AAR04162.1| beta lactamase [UAS-less reporter vector pMELbeta2]
 gi|37812683|gb|AAR04164.1| beta lactamase [UAS-less reporter vector YIpMELalpha2]
 gi|38155840|gb|AAR12689.1| beta-lactamase [Expression vector pcGlobin 2]
 gi|38155843|gb|AAR12691.1| beta-lactamase [Expression vector pcGlobin 2-GST]
 gi|38197735|gb|AAR13800.1| beta-lactamase [Cloning vector pMACSiBac]
 gi|38231645|gb|AAR14724.1| beta-lactamase [Binary vector pAMPAT-MCS]
 gi|38385704|gb|AAR19395.1| ampicillin resistance protein [Cloning vector pTA6]
 gi|38524582|dbj|BAD00011.2| beta-lactamase [Cloning vector pGreen]
 gi|38565538|gb|AAR24091.1| beta-lactamase [Lentiviral transfer vector pHsCXW]
 gi|39636980|gb|AAR29085.1| beta-lactamase [Reporter vector pActXYN]
 gi|39636995|gb|AAR29088.1| beta-lactamase [Reporter vector pUbiGUSPlus]
 gi|39653984|gb|AAR29592.1| beta-lactamase [Reporter vector pGL3(R2.1)]
 gi|39653987|gb|AAR29594.1| beta-lactamase [Reporter vector pGL3(R2.2)]
 gi|39653990|gb|AAR29596.1| beta-lactamase [Reporter vector phRG(R2.1)]
 gi|39653993|gb|AAR29598.1| beta-lactamase [Reporter vector phRG(R2.2)]
 gi|39654023|gb|AAR29600.1| beta-lactamase [Reporter vector pUbiSXR]
 gi|39726212|gb|AAR30045.1| beta-lactamase [Integration vector pPyr-Cm]
 gi|39726215|gb|AAR30047.1| beta-lactamase [Integration vector pPyr-Kan]
 gi|39726218|gb|AAR30049.1| beta-lactamase [Integration vector pGlt-Cm]
 gi|39726221|gb|AAR30051.1| beta-lactamase [Integration vector pGlt-Kan]
 gi|39726224|gb|AAR30053.1| beta-lactamase [Integration vector pSac-Cm]
 gi|39726227|gb|AAR30055.1| beta-lactamase [Integration vector pSac-Kan]
 gi|40549339|gb|AAR87725.1| beta-lactamase [Cloning vector pSM47]
 gi|40804927|gb|AAR91724.1| b-lactamase [Cloning vector psiSTRIKE Basic]
 gi|40804930|gb|AAR91726.1| b-lactamase [Cloning vector psiSTRIKE Hygromycin]
 gi|40804932|gb|AAR91727.1| b-lactamase [Cloning vector psiSTRIKE Puromycin]
 gi|40804935|gb|AAR91729.1| b-lactamase [Cloning Vector psiSTRIKE Neomycin]
 gi|41584255|gb|AAS09816.1| beta-lactamase [Cloning vector piggyBac_PB]
 gi|41584258|gb|AAS09818.1| beta-lactamase [Cloning vector piggyBac_RB]
 gi|41584261|gb|AAS09820.1| beta-lactamase [Cloning vector piggyBac_WH]
 gi|42405464|gb|AAS13538.1| beta-lactamase [Plant binary vector pXCS-HAStrep]
 gi|42494367|gb|AAS17530.1| beta-lactamase [Cloning vector pAGA3]
 gi|42718121|gb|AAS38483.1| beta-lactamase [RNA interference vector psiCHECK(TM)-1]
 gi|42718125|gb|AAS38486.1| beta-lactamase [RNA interference vector psiCHECK(TM)-2]
 gi|42733309|dbj|BAD11211.1| ampicillin resistance protein [Expression vector pTip-NH1]
 gi|42733316|dbj|BAD11217.1| ampicillin resistance protein [Expression vector pTip-CH1]
 gi|42733323|dbj|BAD11223.1| ampicillin resistance protein [Expression vector pTip-NH2]
 gi|42733330|dbj|BAD11229.1| ampicillin resistance protein [Expression vector pTip-CH2]
 gi|42733337|dbj|BAD11235.1| ampicillin resistance protein [Expression vector pTip-LNH1]
 gi|42733344|dbj|BAD11241.1| ampicillin resistance protein [Expression vector pTip-LCH1]
 gi|42733351|dbj|BAD11247.1| ampicillin resistance protein [Expression vector pTip-LNH2]
 gi|42733358|dbj|BAD11253.1| ampicillin resistance protein [Expression vector pTip-LCH2]
 gi|42733365|dbj|BAD11259.1| ampicillin resistance protein [Expression vector pTip-NH1.2]
 gi|42733372|dbj|BAD11265.1| ampicillin resistance protein [Expression vector pTip-CH1.2]
 gi|42733379|dbj|BAD11271.1| ampicillin resistance protein [Expression vector pTip-NH2.2]
 gi|42733386|dbj|BAD11277.1| ampicillin resistance protein [Expression vector pTip-CH2.2]
 gi|42733393|dbj|BAD11283.1| ampicillin resistance protein [Expression vector pTip-LNH1.2]
 gi|42733400|dbj|BAD11289.1| ampicillin resistance protein [Expression vector pTip-LCH1.2]
 gi|42733407|dbj|BAD11295.1| ampicillin resistance protein [Expression vector pTip-LNH2.2]
 gi|42733414|dbj|BAD11301.1| ampicillin resistance protein [Expression vector pTip-LCH2.2]
 gi|42741001|gb|AAS44579.1| beta lactamase [Gene trapping vector pEU334AN]
 gi|42741009|gb|AAS44586.1| beta lactamase [Gene trapping vector pEU334bn]
 gi|44894086|gb|AAS48585.1| b-lactamase [Mammalian expression vector pTargeT]
 gi|44894183|gb|AAS48632.1| beta-lactamase [Cloning vector pGABI1]
 gi|44894186|gb|AAS48634.1| beta-lactamase [Cloning vector pADIS1]
 gi|45738209|gb|AAS75869.1| beta-lactamase [Expression vector pHCMV-SARS-S (FFM-1)]
 gi|45758346|gb|AAS76483.1| beta-lactamase [Cloning vector pHyVec1]
 gi|45861224|gb|AAS78489.1| Amp [Cloning vector pZero++ Amp]
 gi|45861231|gb|AAS78494.1| Amp [Cloning vector pPRCG]
 gi|45861237|gb|AAS78499.1| Amp [Cloning vector pTCCR]
 gi|45861244|gb|AAS78505.1| Amp [Cloning vector pTCCR-Auto]
 gi|46310186|gb|AAS87367.1| beta-lactamase [Cloning vector pHyVec2]
 gi|46850196|gb|AAT02531.1| beta-lactamase [Cloning vector pUC-gfp-neo]
 gi|46850473|gb|AAT02645.1| beta-lactamase [Cloning vector pHyVec3]
 gi|47027944|gb|AAT08986.1| beta-lactamase [FRT source vector pFRT2]
 gi|47027947|gb|AAT08988.1| beta-lactamase [Gentamycin resistance FRT vector pFGM1]
 gi|47027950|gb|AAT08990.1| beta-lactamase [Chloramphenicol resistance FRT vector pFCM1]
 gi|47027953|gb|AAT08992.1| beta-lactamase [Kanamycin resistance FRT vector pFKM1]
 gi|47027960|gb|AAT08998.1| beta-lactamase [Flp expression vector pFLP3]
 gi|47078188|gb|AAT09788.1| beta-lactamase [Baculovirus expression vector pFastBac1-HM]
 gi|47132184|gb|AAT11763.1| beta-lactamase [Cloning vector pUC18-mini-Tn7]
 gi|47132186|gb|AAT11764.1| beta-lactamase [Cloning vector pUC18-mini-Tn7T]
 gi|47132188|gb|AAT11765.1| beta-lactamase [Cloning vector pUC18-R6K-mini-Tn7T]
 gi|47132190|gb|AAT11766.1| beta-lactamase [Cloning vector pUC18Pv-mini-Tn7T]
 gi|47132192|gb|AAT11767.1| beta-lactamase [Cloning vector pUC18T-mini-Tn7T]
 gi|47132195|gb|AAT11769.1| beta-lactamase [Cloning vector pUC18-mini-Tn7T-Gm]
 gi|47132198|gb|AAT11771.1| beta-lactamase [Cloning vector pUC18T-mini-Tn7T-Gm]
 gi|47132202|gb|AAT11774.1| beta-lactamase [Cloning vector pUC18-mini-Tn7T-Gm-lacZ]
 gi|47132206|gb|AAT11777.1| beta-lactamase [Cloning and expression vector pUC18-mini-Tn7T-LAC]
 gi|47174898|gb|AAT12433.1| beta-lactamase [Cloning vector pWormgate2]
 gi|47524498|gb|AAT34981.1| beta-lactamase [Expression vector pMF272]
 gi|47524501|gb|AAT34983.1| beta-lactamase [Expression vector pMF280]
 gi|47524504|gb|AAT34985.1| beta-lactamase [Expression vector pMF309]
 gi|47563664|dbj|BAD20287.1| ampicillin resistance protein [Expression vector pCop-H1]
 gi|47563667|dbj|BAD20289.1| ampicillin resistance protein [Expression vector pCop-H2]
 gi|47563670|dbj|BAD20291.1| ampicillin resistance protein [Expression vector pCop-F1]
 gi|47563673|dbj|BAD20293.1| ampicillin resistance protein [Expression vector pCop-F2]
 gi|48237780|gb|AAT40741.1| beta-lactamase [Phage display vector pTDisp]
 gi|48237783|gb|AAT40743.1| beta-lactamase [Phage display vector pTScDisp]
 gi|48475419|gb|AAT44339.1| ampicillin resistance protein [Shuttle vector pFNLTP1]
 gi|48475426|gb|AAT44345.1| ampicillin resistance protein [Temperature-sensitive shuttle vector
           pFNLTP9]
 gi|49779994|gb|AAT68455.1| beta-lactamase [psiSTRIKE hMGFP vector]
 gi|51090248|dbj|BAD35134.1| beta-lactamase [Expression vector pColdI]
 gi|51090251|dbj|BAD35136.1| beta-lactamase [Expression vector pColdII]
 gi|51090254|dbj|BAD35138.1| beta-lactamase [Expression vector pColdIII]
 gi|51090257|dbj|BAD35140.1| beta-lactamase [Expression vector pColdIV]
 gi|51493752|gb|AAU04864.1| beta-lactamase [Mariner transposase delivery vector pFA545]
 gi|51534179|emb|CAH18716.1| beta-lactamase [Cloning vector pUCTV2]
 gi|51890424|dbj|BAD42597.1| ampicillin resistance protein [Expression vector pTip-QC1]
 gi|51890431|dbj|BAD42603.1| ampicillin resistance protein [Expression vector pTip-QC2]
 gi|51890438|dbj|BAD42609.1| ampicillin resistance protein [Expression vector pTip-QT1]
 gi|51890445|dbj|BAD42615.1| ampicillin resistance protein [Expression vector pTip-QT2]
 gi|51890452|dbj|BAD42621.1| ampicillin resistance protein [Expression vector pTip-RC1]
 gi|51890458|dbj|BAD42626.1| ampicillin resistance protein [Expression vector pTip-RC2]
 gi|51890464|dbj|BAD42631.1| ampicillin resistance protein [Expression vector pTip-RT1]
 gi|51890470|dbj|BAD42636.1| ampicillin resistance protein [Expression vector pTip-RT2]
 gi|51890474|dbj|BAD42639.1| ampicillin resistance protein [Expression vector pNit-QC1]
 gi|51890479|dbj|BAD42643.1| ampicillin resistance protein [Expression vector pNit-QC2]
 gi|51890484|dbj|BAD42647.1| ampicillin resistance protein [Expression vector pNit-QT1]
 gi|51890489|dbj|BAD42651.1| ampicillin resistance protein [Expression vector pNit-QT2]
 gi|51890494|dbj|BAD42655.1| ampicillin resistance protein [Expression vector pNit-RC1]
 gi|51890498|dbj|BAD42658.1| ampicillin resistance protein [Expression vector pNit-RC2]
 gi|51890502|dbj|BAD42661.1| ampicillin resistance protein [Expression vector pNit-RT1]
 gi|51890506|dbj|BAD42664.1| ampicillin resistance protein [Expression vector pNit-RT2]
 gi|51989435|gb|AAU21232.1| beta-lactamase [Plant expression vector pPILY]
 gi|51989437|gb|AAU21233.1| beta-lactamase [Plant expression vector pPESiTc]
 gi|51989439|gb|AAU21234.1| beta-lactamase [Plant expression vector pPESiTb]
 gi|51989441|gb|AAU21235.1| beta-lactamase [Plant expression vector pPESiTa]
 gi|51989443|gb|AAU21236.1| beta-lactamase [Plant expression vector pMESHI]
 gi|51989445|gb|AAU21237.1| beta-lactamase [Plant expression vector pMENCHU]
 gi|51989447|gb|AAU21238.1| beta-lactamase [Plant expression vector pLOLA]
 gi|51989449|gb|AAU21239.1| beta-lactamase [Plant expression vector pGIGI]
 gi|52354840|gb|AAU44622.1| beta-lactamase [Cloning vector pJK95]
 gi|53791213|dbj|BAD52432.1| beta-lactamase [Cloning vector pKA1U5]
 gi|53791215|dbj|BAD52433.1| beta-lactamase [Cloning vector pGCAP1]
 gi|53829087|gb|AAU94550.1| beta-lactamase [pGeneClip Basic cloning vector]
 gi|53829089|gb|AAU94551.1| beta-lactamase [pGeneClip hMGFP Vector]
 gi|53829092|gb|AAU94553.1| beta-lactamase [pGeneClip Hygromycin Vector]
 gi|53829095|gb|AAU94555.1| beta-lactamase [pGeneClip Neomycin Vector]
 gi|53829098|gb|AAU94557.1| beta-lactamase [pGeneClip Puromycin Vector]
 gi|53829616|gb|AAU94687.1| beta-lactamase [Cloning vector pUC18-mini-Tn7-Gm]
 gi|53829621|gb|AAU94691.1| beta lactamase [Cloning vector pUC18-mini-Tn7-LACM15]
 gi|53829624|gb|AAU94693.1| beta lactamase [Cloning vector pUC18R6K-mini-Tn7T-Km]
 gi|54033266|emb|CAH60311.1| betalactamase TEM-116 [Escherichia coli]
 gi|54033268|emb|CAH60312.1| betalactamase TEM-116 [Escherichia coli]
 gi|54033270|emb|CAH60313.1| betalactamase TEM-116 [Escherichia coli]
 gi|54043008|gb|AAV28496.1| beta lactamase [Cloning vector pUC18-mini-Tn7T-Gm-Gateway]
 gi|54043011|gb|AAV28498.1| beta lactamase [Cloning vector pUC18-mini-Tn7T-Tp]
 gi|54043016|gb|AAV28502.1| beta lactamase [Cloning vector pUC18-mini-Tn7T-Tp-Gateway]
 gi|55535620|gb|AAV52870.1| synthetic beta-lactamase [Firefly luciferase reporter vector
           pGL4.10[luc2]]
 gi|55535623|gb|AAV52872.1| synthetic beta-lactamase [Firefly luciferase reporter vector
           pGL4.11[luc2P]]
 gi|55535626|gb|AAV52874.1| synthetic beta-lactamase [Firefly luciferase reporter vector
           pGL4.12[luc2CP]]
 gi|55535629|gb|AAV52876.1| synthetic beta-lactamase [Firefly luciferase reporter vector
           pGL4.13[luc2/SV40]]
 gi|55535632|gb|AAV52878.1| synthetic beta-lactamase [Renilla luciferase reporter vector
           pGL4.70[hRluc]]
 gi|55535635|gb|AAV52880.1| synthetic beta-lactamase [Renilla luciferase reporter vector
           pGL4.71[hRlucP]]
 gi|55535638|gb|AAV52882.1| synthetic beta-lactamase [Renilla luciferase reporter vector
           pGL4.72[hRlucCP]]
 gi|55535641|gb|AAV52884.1| synthetic beta-lactamase [Renilla luciferase reporter vector
           pGL4.73[hRluc/SV40]]
 gi|55535644|gb|AAV52886.1| synthetic beta-lactamase [Renilla luciferase reporter vector
           pGL4.74[hRluc/TK]]
 gi|55535647|gb|AAV52888.1| synthetic beta-lactamase [Renilla luciferase reporter vector
           pGL4.75[hRluc/CMV]]
 gi|55669169|gb|AAV54523.1| beta-lactamase [Phagemid vector pMID21]
 gi|56089684|gb|AAV70826.1| beta-lactamase [Expression vector pHT2]
 gi|56119175|gb|AAV73951.1| beta-lactamase [siRNA vector pAAV9(5)-CMV-EGFP-CytB-AS-ohneBgl]
 gi|56119178|gb|AAV73953.1| beta-lactamase [siRNA vector pSUPER-CMV-DsRed2N1-CytB-AS]
 gi|56119181|gb|AAV73955.1| beta-lactamase [siRNA vector pSUPER-CMV-EGFP-CytB-AS]
 gi|56119184|gb|AAV73957.1| beta-lactamase [siRNA vector pSUPER-CMV-EGFP-CytB-AS-ohneBgl]
 gi|56119187|gb|AAV73959.1| beta-lactamase [siRNA vector pSUPER-hSyn-DsRed2N1-CytB-AS]
 gi|56119190|gb|AAV73961.1| beta-lactamase [siRNA vector pSUPER-hSyn-EGFP-CytB-AS]
 gi|56119192|gb|AAV73962.1| beta-lactamase [siRNA vector pAAV9(5)-CMV-DsRed2N1-CytB-AS-ohneNot]
 gi|56119196|gb|AAV73965.1| beta-lactamase [siRNA vector pAAV9(5)-CMV-EGFP-CytB-AS-ohneBgl]
 gi|56119199|gb|AAV73967.1| beta-lactamase [siRNA vector pAAV9(5)-CMV-EGFP-CytB-AS-ohneNot]
 gi|56119201|gb|AAV73968.1| beta-lactamase [siRNA vector
           pAAV9(5)-hSyn-DsRed2N1-CytB-AS-ohneNot]
 gi|56119205|gb|AAV73971.1| beta-lactamase [siRNA vector pAAV9(5)-hSyn-DsRed2N1-EGFP-siRNA]
 gi|56406596|gb|AAV87647.1| beta-lactamase [Flexi Vector pF1A T7]
 gi|56406603|gb|AAV87652.1| beta-lactamase [Flexi Vector pFN2A (GST)]
 gi|56406610|gb|AAV87657.1| beta-lactamase [Flexi Vector pF4A (CMV)]
 gi|56541549|dbj|BAD77830.1| beta-lactamase [Expression vector pTD1(TM)]
 gi|56553542|gb|AAV97891.1| bla [Cloning vector pSAT1-EGFP-C1]
 gi|56553544|gb|AAV97892.1| bla [Hygromycin resistance plant expression vector pSAT1-hpt]
 gi|56553547|gb|AAV97894.1| bla [Cloning vector pSAT2-EGFP-C1]
 gi|56553549|gb|AAV97895.1| bla [Cloning vector pSAT3-EGFP-C1]
 gi|56553551|gb|AAV97896.1| bla [Cloning vector pSAT4-EGFP-C1]
 gi|56553553|gb|AAV97897.1| bla [Cloning vector pSAT5-EGFP-C1]
 gi|56553555|gb|AAV97898.1| bla [Cloning vector pSAT6-Citrine-N1]
 gi|56553561|gb|AAV97903.1| bla [Gateway destination plasmid pSAT6-DEST-EGFP-N1]
 gi|56553563|gb|AAV97904.1| bla [Kanamycin resistance plant expression vector pSAT4-nptII]
 gi|56553568|gb|AAV97908.1| bla [Gateway destination plasmid pSAT6-DEST-EGFP-C1]
 gi|56553570|gb|AAV97909.1| bla [Cloning vector pSAT6-DsRed2-N1]
 gi|56553573|gb|AAV97911.1| bla [Cloning vector pSAT6-ECFP-C1]
 gi|56553575|gb|AAV97912.1| bla [Cloning vector pSAT6-DsRed2-C1]
 gi|56553577|gb|AAV97913.1| bla [Phosphinothricin resistance plant expression vector pSAT6-bar]
 gi|56553580|gb|AAV97915.1| bla [Cloning vector pSAT6-EGFP-C1]
 gi|56553582|gb|AAV97916.1| bla [Cloning vector pSAT6-EYFP-N1]
 gi|56553587|gb|AAV97920.1| bla [Gateway destination plasmid pSAT6-NP-DEST-EGFP]
 gi|56553589|gb|AAV97921.1| bla [Cloning vector pSAT6-EYFP-C1]
 gi|56553591|gb|AAV97922.1| bla [Cloning vector pSAT6-ECFP-N1]
 gi|56553594|gb|AAV97924.1| bla [Cloning vector pSAT6-EGFP-N1]
 gi|56553597|gb|AAV97926.1| bla [Cloning vector pSAT6-MCS]
 gi|56553599|gb|AAV97927.1| bla [Cloning vector pSAT7-EGFP-C1]
 gi|56553601|gb|AAV97928.1| bla [Cloning vector pSAT6-Citrine-C1]
 gi|56912127|emb|CAI39221.1| beta-lactamase [Transconjugation plasmid pEMOC2]
 gi|56912130|emb|CAI39223.1| beta-lactamase [Transconjugation plasmid pBMK1]
 gi|57337321|emb|CAH65832.1| beta lactamase [Cloning vector pASK88-huHRS3-VH-EP3/1]
 gi|57790544|gb|AAW56199.1| beta-lactamase [Tetracycline resistance FRT vector pFTC1]
 gi|57790547|gb|AAW56201.1| beta-lactamase [Trimethoprim resistance FRT vector pFTP1]
 gi|57790550|gb|AAW56203.1| beta-lactamase [Cloning vector pUC18T-mini-Tn7T-Gm-REP]
 gi|57790552|gb|AAW56204.1| beta-lactamase [Mini-Tn7 delivery vector pUC18R6KT-mini-Tn7T]
 gi|57864189|emb|CAH59707.1| ampicillin resistance [Cloning vector pFlexible]
 gi|58201867|gb|AAW66983.1| synthetic beta-lactamase [Luciferase reporter vector
           pGL4.14[luc2/Hygro]]
 gi|58201872|gb|AAW66987.1| synthetic beta-lactamase [Luciferase reporter vector
           pGL4.15[luc2P/Hygro]]
 gi|58201876|gb|AAW66990.1| synthetic beta-lactamase [Luciferase reporter vector
           pGL4.16[luc2CP/Hygro]]
 gi|58201880|gb|AAW66993.1| synthetic beta-lactamase [Luciferase reporter vector
           pGL4.76[hRluc/Hygro]]
 gi|58201884|gb|AAW66996.1| synthetic beta-lactamase [Luciferase reporter vector
           pGL4.77[hRlucP/Hygro]]
 gi|58201888|gb|AAW66999.1| synthetic beta-lactamase [Luciferase reporter vector
           pGL4.78[hRlucCP/Hygro]]
 gi|58533133|gb|AAW78922.1| beta-lactamase [Cloning and suicide delivery vector pUC18R6KT]
 gi|58533139|gb|AAW78927.1| beta-lactamase [T7 transposase expression vector pTNS2]
 gi|58533142|gb|AAW78929.1| beta-lactamase [Cloning and Tn7 delivery vector
           pUC18R6K-mini-Tn7T-Km]
 gi|58843568|gb|AAW82912.1| mutant extended-spectrum beta-lactamase [Klebsiella pneumoniae]
 gi|59894878|gb|AAX11248.1| bla [Gene deletion vector pEX100Tlink]
 gi|59894880|gb|AAX11249.1| bla [Gene deletion vector pUCGM-lox]
 gi|60101688|gb|AAX13968.1| beta-lactamase [Dual fluorescent protein cloning vector pGRFP]
 gi|60115916|gb|AAX14066.1| beta-lactamase [Reporter vector pUS23]
 gi|60547283|gb|AAX23611.1| beta-lactamase [Cloning vector pEX18ApGW]
 gi|60651291|gb|AAX31733.1| beta lactamase [Reporter shuttle vector pSUN202]
 gi|60651294|gb|AAX31735.1| beta lactamase [Cloning shuttle vector pSCR202]
 gi|62178046|gb|AAX73186.1| beta-lactamase [Transcriptional fusion vector
           pUC18-mini-Tn7T-Gm-lux]
 gi|62275798|gb|AAX78236.1| beta-lactamase [Flexi Vector pF3A WG (BYDV)]
 gi|62467027|gb|AAX83681.1| beta-lactamase [Expression vector pKLAC1]
 gi|62736901|gb|AAX97735.1| beta-lactamase [Cloning vector pBS 35S Rluc-attR]
 gi|62736906|gb|AAX97739.1| beta-lactamase [Cloning vector pBS 35S YFP-attR]
 gi|62736911|gb|AAX97743.1| beta-lactamase [Cloning vector pBS 35S hRluc-attR]
 gi|62736916|gb|AAX97747.1| beta-lactamase [Cloning vector pBS 35S attR-Rluc]
 gi|62736921|gb|AAX97751.1| beta-lactamase [Cloning vector pBS 35S attR-hRluc]
 gi|62736926|gb|AAX97755.1| beta-lactamase [Cloning vector pBS 35S attR-YFP]
 gi|62945930|gb|AAY22206.1| beta-lactamase [unidentified cloning vector]
 gi|62946660|gb|AAY22441.1| beta-lactamase [Baculovirus expression vector pUltraBac-1]
 gi|63002504|gb|AAY25357.1| Bla [Cloning vector pSAT7-actP-MCS-agsT]
 gi|63002507|gb|AAY25359.1| Bla [Cloning vector pSAT1A-ocsAocsP-bar-ocsT]
 gi|63002510|gb|AAY25361.1| Bla [Cloning vector pSAT1A-ocsAocsP-hpt-ocsT]
 gi|63002512|gb|AAY25362.1| Bla [Cloning vector pSAT1A-ocsAocsP-MCS-ocsT]
 gi|63002515|gb|AAY25364.1| Bla [Cloning vector pSAT1A-ocsAocsP-nptII-ocsT]
 gi|63002517|gb|AAY25365.1| Bla [Cloning vector pSAT1-ocsAocsP-MCS-ocsT]
 gi|63002519|gb|AAY25366.1| Bla [Cloning vector pSAT2A-nosP-MCS-nosT]
 gi|63002521|gb|AAY25367.1| Bla [Cloning vector pSAT2-nosP-MCS-nosT]
 gi|63002523|gb|AAY25368.1| Bla [Cloning vector pSAT3A-masP-MCS-masT]
 gi|63002525|gb|AAY25369.1| Bla [Cloning vector pSAT3-masP-MCS-masT]
 gi|63002527|gb|AAY25370.1| Bla [Cloning vector pSAT4-35SP-MCS-35ST]
 gi|63002529|gb|AAY25371.1| Bla [Cloning vector pSAT4A-35SP-MCS-35ST]
 gi|63002532|gb|AAY25373.1| Bla [Cloning vector pSAT6A-DsRed2-N1]
 gi|63002535|gb|AAY25375.1| Bla [Cloning vector pSAT6A-ECFP-N1]
 gi|63002538|gb|AAY25377.1| Bla [Cloning vector pSAT6A-EGFP-N1]
 gi|63002540|gb|AAY25378.1| Bla [Cloning vector pSAT6A-rbcP-MCS-rbcT]
 gi|63002543|gb|AAY25380.1| Bla [Cloning vector pSAT6A-RFP-N1]
 gi|63002545|gb|AAY25381.1| Bla [Cloning vector pSAT6-rbcP-MCS-rbcT]
 gi|63002548|gb|AAY25383.1| Bla [Cloning vector pSAT6-RFP-C1]
 gi|63002551|gb|AAY25385.1| Bla [Cloning vector pSAT6-RFP-N1]
 gi|63002553|gb|AAY25386.1| Bla [Cloning vector pSAT7A-actP-MCS-agsT]
 gi|66276900|gb|AAY44381.1| AP(R) [Yeast expression vector p426GALL]
 gi|66472065|dbj|BAD98927.1| beta-lactamase [Expression vector pColdTF]
 gi|66473437|gb|AAY46370.1| beta-lactamase [Cloning vector pMAB143]
 gi|66815023|gb|AAY56737.1| beta lactamase [Cloning vector pMBL]
 gi|67089185|gb|AAY66997.1| beta-lactamase [Cloning vector p713-1555]
 gi|70610371|gb|AAZ05447.1| beta-lactamase [Cloning vector pUC19-35S-FLAG-RBS]
 gi|70672666|gb|AAZ06566.1| beta-lactamase [Microarray RNA control template pNIAysic-1]
 gi|70672668|gb|AAZ06567.1| beta-lactamase [Microarray RNA control template pNIAysic-2]
 gi|70672670|gb|AAZ06568.1| beta-lactamase [Microarray spike-in control plasmid pNIAysic-3]
 gi|70672672|gb|AAZ06569.1| beta-lactamase [Microarray spike-in control plasmid pNIAysic-4]
 gi|70672674|gb|AAZ06570.1| beta-lactamase [Microarray spike-in control plasmid pNIAysic-5]
 gi|70672676|gb|AAZ06571.1| beta-lactamase [Microarray spike-in control plasmid pNIAysic-6]
 gi|70672678|gb|AAZ06572.1| beta-lactamase [Microarray spike-in control plasmid pNIAysic-7]
 gi|71493344|gb|AAZ32776.1| beta-lactamase [Apramycin resistance FRT vector pFAP1]
 gi|71493347|gb|AAZ32778.1| beta-lactamase [Zeocin resistance FRT vector pFZE1]
 gi|73672810|gb|AAZ80483.1| beta-lactamase [Cloning vector pUC18R6K-mini-Tn7T-Gm]
 gi|73697469|gb|AAZ81407.1| beta-lactamase [pFN6A (HQ) Flexi Vector]
 gi|73697475|gb|AAZ81411.1| beta-lactamase [pFC7A (HQ) Flexi Vector]
 gi|73697481|gb|AAZ81415.1| beta-lactamase [Cloning vector pFC8A]
 gi|76364281|gb|ABA41655.1| beta-lactamase [Firefly luciferase reporter vector
           pGL4.17[luc2/Neo]]
 gi|76364285|gb|ABA41658.1| beta-lactamase [Firefly luciferase reporter vector
           pGL4.18[luc2P/Neo]]
 gi|76364289|gb|ABA41661.1| beta-lactamase [Firefly luciferase reporter vector
           pGL4.19[luc2CP/Neo]]
 gi|76364293|gb|ABA41664.1| beta-lactamase [Firefly luciferase reporter vector
           pGL4.20[luc2/Puro]]
 gi|76364297|gb|ABA41667.1| beta-lactamase [Firefly luciferase reporter vector
           pGL4.21[luc2P/Puro]]
 gi|76364301|gb|ABA41670.1| beta-lactamase [Firefly luciferase reporter vector
           pGL4.22[luc2CP/Puro]]
 gi|76364305|gb|ABA41673.1| beta-lactamase [Renilla luciferase reporter vector
           pGL4.79[hRluc/Neo]]
 gi|76364309|gb|ABA41676.1| beta-lactamase [Renilla luciferase reporter vector
           pGL4.80[hRlucP/Neo]]
 gi|76364313|gb|ABA41679.1| beta-lactamase [Renilla luciferase reporter vector
           pGL4.81[hRlucCP/Neo]]
 gi|76364317|gb|ABA41682.1| beta-lactamase [Renilla luciferase reporter vector
           pGL4.82[hRluc/Puro]]
 gi|76364321|gb|ABA41685.1| beta-lactamase [Renilla luciferase reporter vector
           pGL4.83[hRlucP/Puro]]
 gi|76364325|gb|ABA41688.1| beta-lactamase [Renilla luciferase reporter vector
           pGL4.84[hRlucCP/Puro]]
 gi|76496268|gb|ABA43651.1| beta-lactamase [Saccharomyces cerevisiae expression vector p426GPD]
 gi|76667909|dbj|BAE45351.1| beta lactamase [Cloning vector p3216PCbeta]
 gi|76799968|gb|ABA55626.1| beta lactamase [synthetic construct]
 gi|77745601|gb|ABB02678.1| bla [Bi-molecular fluorescence complementation vector
           pSAT4-nEYFP-C1]
 gi|77745603|gb|ABB02679.1| bla [Bi-molecular fluorescence complementation vector
           pSAT1-nEYFP-C1]
 gi|77745605|gb|ABB02680.1| bla [Bi-molecular fluorescence complementation vector
           pSAT1-cEYFP-C1-B]
 gi|77745607|gb|ABB02681.1| bla [Bi-molecular fluorescence complementation vector
           pSAT4-cEYFP-C1-B]
 gi|77745609|gb|ABB02682.1| bla [Bi-molecular fluorescence complementation vector
           pSAT1A-cEYFP-N1]
 gi|77745611|gb|ABB02683.1| bla [Bi-molecular fluorescence complementation vector
           pSAT1A-nEYFP-N1]
 gi|77745613|gb|ABB02684.1| bla [Bi-molecular fluorescence complementation vector
           pSAT1-cEYFP-N1]
 gi|77745615|gb|ABB02685.1| bla [Bi-molecular fluorescence complementation vector
           pSAT1-nEYFP-N1]
 gi|77745617|gb|ABB02686.1| bla [Bi-molecular fluorescence complementation vector
           pSAT4A-cEYFP-N1]
 gi|77745619|gb|ABB02687.1| bla [Bi-molecular fluorescence complementation vector
           pSAT4A-nEYFP-N1]
 gi|77745621|gb|ABB02688.1| bla [Bi-molecular fluorescence complementation vector
           pSAT4-cEYFP-N1]
 gi|77745623|gb|ABB02689.1| bla [Bi-molecular fluorescence complementation vector
           pSAT4-nEYFP-N1]
 gi|77819884|gb|ABB04076.1| AmpR [Shuttle vector pMQ51]
 gi|77819890|gb|ABB04081.1| AmpR [Shuttle vector pMQ52]
 gi|77994165|gb|ABB13468.1| beta-lactamase [Mini-Tn7 delivery vector
           pUC18R6K-mini-Tn7T-Gm-PlacPflaAgfpmut2]
 gi|77999627|gb|ABB17063.1| beta lactamase [Moss transformation vector pMBL5]
 gi|77999630|gb|ABB17065.1| beta lactamase [Moss transformation vector pMBL6]
 gi|77999633|gb|ABB17067.1| beta lactamase [Moss gene targeting vector pMBL6attR]
 gi|78214571|gb|ABB36476.1| AmpR [Saccharomyces cerevisiae expression vector p423GALL]
 gi|81175361|gb|ABB59018.1| beta-lactamase [Himar1-delivery and mutagenesis vector pFNLTP16 H3]
 gi|81175367|gb|ABB59023.1| Bla [Francisella complementation plasmid pFNLTP23]
 gi|81238110|gb|ABB59938.1| Bla [Expression vector pMF331]
 gi|81238113|gb|ABB59940.1| Bla [Expression vector pMF332]
 gi|81238116|gb|ABB59942.1| Bla [Expression vector pMF334]
 gi|81238198|gb|ABB59949.1| beta-lactamase [Gene trapping Ds/T-DNA vector pUR224NA]
 gi|81238205|gb|ABB59955.1| beta-lactamase [Gene trapping Ds/T-DNA vector pUR224NB]
 gi|81238212|gb|ABB59961.1| beta-lactamase [Gene trapping Ds/T-DNA vector pNU393A1]
 gi|81238219|gb|ABB59967.1| beta-lactamase [Gene trapping Ds/T-DNA vector pNU393B2]
 gi|81238226|gb|ABB59973.1| beta-lactamase [Gene trapping Ds/T-DNA vector pNU435]
 gi|81345495|gb|ABB71437.1| beta-lactamase [Cloning vector pBBR-IBA3plus]
 gi|82548123|gb|ABB82601.1| AmpR [Yeast centromeric expression vector p416GPD]
 gi|82569472|gb|ABB83372.1| AmpR [Expression Vector p413-SSRE]
 gi|82569475|gb|ABB83374.1| AmpR [Expression Vector p413-TR-SSRE]
 gi|82569478|gb|ABB83376.1| AmpR [Expression vector p413-PGAL1]
 gi|82569481|gb|ABB83378.1| AmpR [Expression vector p413-SSRE-GFP]
 gi|82569485|gb|ABB83381.1| AmpR [Expression vector p413-TR-SSRE-GFP]
 gi|82569489|gb|ABB83384.1| AmpR [Quorum Sensing Vector p413-SSRE-AtIPT4]
 gi|82569493|gb|ABB83387.1| AmpR [Quorum Sensing Vector p413-TR-SSRE-AtIPT4]
 gi|82569497|gb|ABB83390.1| AmpR [Quorum Sensing Vector p413-PGAL1-AtIPT4]
 gi|82569502|gb|ABB83394.1| AmpR [Receiver Vector p415-CYC1-CRE1a-SSRE-GFP]
 gi|82569507|gb|ABB83398.1| AmpR [Receiver Vector p415-CYC1-CRE1a-TR-SSRE-GFP]
 gi|82569511|gb|ABB83401.1| AmpR [Expression Vector p415-CYC1-DsRed-Exp]
 gi|82569515|gb|ABB83404.1| AmpR [Expression Vector p415-TEF-DsRed-Exp]
 gi|82569520|gb|ABB83408.1| AmpR [Sender Vector p416-GAL1-AtIPT4]
 gi|83033221|gb|ABB97072.1| beta-lactamase [Mini-Tn7 delivery vector pUC18-mini-Tn7T-Gm-lacZ10]
 gi|83033225|gb|ABB97075.1| beta-lactamase [Mini-Tn7 delivery vector pUC18-mini-Tn7T-Gm-lacZ20]
 gi|83033229|gb|ABB97078.1| beta-lactamase [Mini-Tn7 delivery vector pUC18-mini-Tn7T-Gm-lacZ30]
 gi|83281168|dbj|BAE53670.1| beta-lactamase [Cloning vector pDESTR]
 gi|83779167|gb|ABC47404.1| beta-lactamase [Positive selection cloning vector pJET1]
 gi|85062534|gb|ABC69142.1| beta-lactamase [Cloning vector pHyVec5]
 gi|86278337|gb|ABC88421.1| ampicillin resistance marker [Delivery vector pIEF16S]
 gi|87080787|dbj|BAE79258.1| beta-lactamase [Expression vector pColdI(SP-4)]
 gi|87080790|dbj|BAE79260.1| beta-lactamase [Expression vector pColdII(SP-4)]
 gi|87080793|dbj|BAE79262.1| beta-lactamase [Expression vector pColdIII(SP-4)]
 gi|87080796|dbj|BAE79264.1| beta-lactamase [Expression vector pColdIV(SP-4)]
 gi|87133613|gb|ABD24449.1| Bla [Shuttle expression-secretion vector pP43NMK]
 gi|87159693|dbj|BAE79429.1| beta-lactamase [Cloning vector pPL450]
 gi|87159696|dbj|BAE79431.1| beta-lactamase [Cloning vector pPL451]
 gi|87159699|dbj|BAE79433.1| beta-lactamase [Cloning vector pPL452]
 gi|87159702|dbj|BAE79435.1| beta-lactamase [Cloning vector pCL476]
 gi|87159705|dbj|BAE79437.1| beta-lactamase [Cloning vector pCL478]
 gi|87159708|dbj|BAE79439.1| beta-lactamase [Cloning vector pND706]
 gi|87159711|dbj|BAE79441.1| beta-lactamase [Cloning vector pND707]
 gi|88173989|gb|ABD39138.1| b-lactamase [Cloning vector pBGGT]
 gi|88174978|gb|ABD39513.1| beta-lactamase [Cloning vector pHyVec4]
 gi|88687073|emb|CAJ47404.1| beta-lactamase [synthetic construct]
 gi|89276252|gb|ABD66476.1| beta-lactamase [Cloning vector pFA6a-HBH-kanMX6]
 gi|89276255|gb|ABD66478.1| beta-lactamase [Cloning vector pFA6a-HBH-hphMX4]
 gi|89276258|gb|ABD66480.1| beta-lactamase [Cloning vector pFA6a-HBH-TRP1]
 gi|89276261|gb|ABD66482.1| beta-lactamase [Cloning vector pFA6a-HTB-kanMX6]
 gi|89276264|gb|ABD66484.1| beta-lactamase [Cloning vector pFA6a-HTB-hphMX4]
 gi|89276267|gb|ABD66486.1| beta-lactamase [Cloning vector pFA6a-HTB-TRP1]
 gi|89276270|gb|ABD66488.1| beta-lactamase [Cloning vector pFA6a-BIO-kanMX6]
 gi|89276273|gb|ABD66490.1| beta-lactamase [Cloning vector pFA6a-BIO-hphMX4]
 gi|89276276|gb|ABD66492.1| beta-lactamase [Cloning vector pFA6a-BIO-TRP1]
 gi|89276279|gb|ABD66494.1| beta-lactamase [Cloning vector pFA6a-RGS18H-kanMX6]
 gi|89276282|gb|ABD66496.1| beta-lactamase [Cloning vector pFA6a-RGS18HIS-hphMX4]
 gi|89276285|gb|ABD66498.1| beta-lactamase [Cloning vector pFA6a-RGS18H-TRP1]
 gi|89276287|gb|ABD66499.1| beta-lactamase [Cloning vector pFA6a-kanMX6-PGAL1-HBH]
 gi|89276290|gb|ABD66501.1| beta-lactamase [Cloning vector pFA6a-TRP1-PGAL1-HBH]
 gi|89513615|gb|ABD74634.1| beta lactamase [Functional Analysis plasmid pFA-CaURA3]
 gi|89513618|gb|ABD74636.1| beta lactamase [Functional Analysis plasmid pFA-CaHIS1]
 gi|89513621|gb|ABD74638.1| beta lactamase [Functional Analysis plasmid pFA-CaARG4]
 gi|89513624|gb|ABD74640.1| beta lactamase [Functional Analysis plasmid pFA-CaURA3-MAL2prom]
 gi|89513627|gb|ABD74642.1| beta lactamase [Functional Analysis plasmid pFA-CaHIS1-MAL2prom]
 gi|89513630|gb|ABD74644.1| beta lactamase [Functional Analysis plasmid pFA-CaARG4-MAL2prom]
 gi|89513633|gb|ABD74646.1| beta lactamase [Functional Analysis plasmid pFA-CaURA3-MET3prom]
 gi|89513636|gb|ABD74648.1| beta lactamase [Functional Analysis plasmid pFA-CaHIS1-MET3prom]
 gi|89513639|gb|ABD74650.1| beta lactamase [Functional Analysis plasmid pFA-CaARG4-MET3prom]
 gi|89513642|gb|ABD74652.1| beta lactamase [Functional Analysis plasmid pFA-GFP-CaURA3]
 gi|89513646|gb|ABD74655.1| beta lactamase [Functional Analysis plasmid pFA-GFP-CaHIS1]
 gi|89513648|gb|ABD74656.1| beta lactamase [Functional Analysis plasmid pFA-GFP-CaARG4]
 gi|89513651|gb|ABD74658.1| beta lactamase [Functional Analysis Plasmid pFA-CdHIS1]
 gi|89513654|gb|ABD74660.1| beta lactamase [Functional Analysis Plasmid pFA-CmLEU2]
 gi|89513657|gb|ABD74662.1| beta lactamase [Functional Analysis Plasmid pFA-SAT1]
 gi|89513660|gb|ABD74664.1| beta lactamase [Functional Analysis Plasmid pFA-CdHIS1-MAL2prom]
 gi|89513663|gb|ABD74666.1| beta lactamase [Functional Analysis Plasmid pFA-CmLEU2-MAL2prom]
 gi|89513666|gb|ABD74668.1| beta lactamase [Functional Analysis Plasmid pFA-SAT1-MAL2prom]
 gi|89513669|gb|ABD74670.1| beta lactamase [Functional Analysis Plasmid pFA-CaHIS1-AgTEFprom]
 gi|89513672|gb|ABD74672.1| beta lactamase [Functional Analysis Plasmid pFA-CdHIS-AgTEFprom]
 gi|89513675|gb|ABD74674.1| beta lactamase [Functional Analysis Plasmid pFA-CmLEU2-AgTEFprom]
 gi|89513678|gb|ABD74676.1| beta lactamase [Functional Analysis Plasmid pFA-CdHIS1-MET3prom]
 gi|89513681|gb|ABD74678.1| beta lactamase [Functional Analysis Plasmid pFA-CmLEU2-MET3prom]
 gi|89513684|gb|ABD74680.1| beta lactamase [Functional Analysis Plasmid pFA-SAT1-MET3prom]
 gi|89513687|gb|ABD74682.1| beta lactamase [Functional Analysis Plasmid
           pFA-CaHIS1-MAL2prom-GFP(GA)6]
 gi|89513690|gb|ABD74684.1| beta lactamase [Functional Analysis Plasmid
           pFA-CdHIS-AgTEFprom-GFP(GA)6]
 gi|89513693|gb|ABD74686.1| beta lactamase [Functional Analysis Plasmid pFA-GFP-CdHIS1]
 gi|89513696|gb|ABD74688.1| beta lactamase [Functional Analysis Plasmid pFA-GFP-CmLEU2]
 gi|89513699|gb|ABD74690.1| beta lactamase [Functional Analysis Plasmid
           pFA-CaHIS1-MAL2prom-6x-His-tag]
 gi|90074887|dbj|BAE87123.1| beta-lactamase [Expression vector pUC18VcluxOR]
 gi|90074890|dbj|BAE87125.1| beta-lactamase [Expression vector pUC18VcluxOD]
 gi|91795126|gb|ABE60867.1| beta-lactmase [Conjugative vector pHW001]
 gi|92918408|gb|ABE96682.1| beta-lactamase [shRNA expression vector pSiRPG]
 gi|94470453|gb|ABF20537.1| beta-lactamase [Integration vector pBGSC6]
 gi|94481125|dbj|BAE93935.1| beta-lactamase [Cloning vector pBARST]
 gi|94540633|gb|ABF31012.1| Bla [Delivery vector pIEFBPR]
 gi|94958299|gb|ABF47280.1| beta-lactamase [Microarray spiking control vector pSP64bb1sp1]
 gi|94958301|gb|ABF47281.1| beta-lactamase [Microarray spiking control vector pSP64bb2sp3]
 gi|94958303|gb|ABF47282.1| beta-lactamase [Microarray spiking control vector pSP64bb2sp4]
 gi|94958305|gb|ABF47283.1| beta-lactamase [Microarray spiking control vector pSP64bb2sp5]
 gi|94963142|gb|ABF48729.1| beta-lactamase [TF expression vector pB1H2]
 gi|95102177|gb|ABF51013.1| beta-lactamase [Zea mays]
 gi|104716771|gb|ABF74524.1| beta-lactamase [Cloning vector pUC18T-mini-Tn7T-Tp]
 gi|104716803|gb|ABF74526.1| beta-lactamase [Cloning vector pUC18T-mini-Tn7T-Zeo]
 gi|104716837|gb|ABF74529.1| beta-lactamase [Mini-Tn7 delivery vector
           pUC18T-mini-Tn7T-Gm-gfpmut3]
 gi|104716873|gb|ABF74532.1| beta-lactamase [Mini-Tn7 delivery vector pUC18T-mini-Tn7T-Gm-ecfp]
 gi|104716912|gb|ABF74535.1| beta-lactamase [Mini-Tn7 delivery vector pUC18T-mini-Tn7T-Gm-eyfp]
 gi|104716947|gb|ABF74538.1| beta-lactamase [Mini-Tn7 delivery vector
           pUC18T-mini-Tn7T-Gm-DsRedExpress]
 gi|104716984|gb|ABF74541.1| beta-lactamase [Mini-Tn7 delivery vector
           pUC18T-mini-Tn7T-Tp-gfpmut3]
 gi|104717022|gb|ABF74544.1| beta-lactamase [Mini-Tn7 delivery vector pUC18T-mini-Tn7T-Tp-ecfp]
 gi|104717072|gb|ABF74547.1| beta-lactamase [Mini-Tn7 delivery vector pUC18T-mini-Tn7T-Tp-eyfp]
 gi|104717111|gb|ABF74550.1| beta-lactamase [Mini-Tn7 delivery vector
           pUC18T-mini-Tn7T-Tp-DsRedExpress]
 gi|104717160|gb|ABF74553.1| beta-lactamase [Mini-Tn7 delivery vector
           pUC18T-mini-Tn7T-Zeo-gfpmut3]
 gi|104717200|gb|ABF74556.1| beta-lactamase [Mini-Tn7 delivery vector pUC18T-mini-Tn7T-Zeo-ecfp]
 gi|104717238|gb|ABF74559.1| beta-lactamase [Mini-Tn7 delivery vector pUC18T-mini-Tn7T-Zeo-eyfp]
 gi|104717278|gb|ABF74562.1| beta-lactamase [Mini-Tn7 delivery vector
           pUC18T-mini-Tn7T-Zeo-DsRedExpress]
 gi|104744459|gb|ABF74575.1| beta-lactamase [Mammalian expression vector pNBio]
 gi|104744494|gb|ABF74578.1| beta-lactamase [Mammalian expression vector pCBio]
 gi|108671047|gb|ABF93442.1| beta-lactamase [Expression vector CS105]
 gi|108671049|gb|ABF93443.1| beta-lactamase [Expression vector CS107]
 gi|108671051|gb|ABF93444.1| beta-lactamase [Expression vector CS108]
 gi|108671053|gb|ABF93445.1| beta-lactamase [Expression vector CS111]
 gi|108741853|gb|ABG01696.1| beta-lactamase [Flexi Vector pFN10A (ACT)]
 gi|108741858|gb|ABG01700.1| beta-lactamase [Flexi Vector pFN11A (BIND)]
 gi|108741862|gb|ABG01703.1| synthetic beta-lactamase [Cloning vector pGL4.31 (luc2P/GAL4
           UAS/Hygro)]
 gi|108947433|gb|ABG24166.1| ampicillin resistance protein [Cloning vector pDNR-Dual]
 gi|109159326|gb|ABG26756.1| beta-lactamase [Cloning vector pPCR-Script Amp SK(+)]
 gi|109290444|gb|ABG29428.1| beta-lactamase [Reporter vector pBNP1]
 gi|109290447|gb|ABG29430.1| ampicillin resistance protein [cloning vector pPlat-Pds-Mod4.1]
 gi|109900617|gb|ABG47803.1| beta-lactamase [Flexi vector pF5A CMV-neo]
 gi|110227284|gb|ABG56582.1| Bla [Shuttle vector pMQ78]
 gi|110227303|gb|ABG56598.1| Bla [Shuttle vector pMQ95]
 gi|110433180|gb|ABG74348.1| beta-lactamase [cloning vector pExpress-1]
 gi|111054491|gb|ABH04321.1| beta-lactamase [Transgenesis vector I-SceI-pBSII-SK+]
 gi|111146844|gb|ABH07370.1| beta-lactamase [Cloning vector pBlueScript-FL]
 gi|112146877|gb|ABI13484.1| beta-lactamase [PCR cloning vector pAnti-Kit-Barnase]
 gi|112789892|gb|ABI21733.1| beta-lactamase [Cloning vector pControl-1]
 gi|113473485|gb|ABI35979.1| beta-lactamase [Cloning vector pYESW29']
 gi|114054348|gb|ABI49757.1| beta-lactamase [CMV hRluc-neo Flexi Vector pF9A]
 gi|114329296|gb|ABI64164.1| Amp [Keratinocyte expression vector phPK14H]
 gi|114386390|gb|ABI74452.1| beta-lactamase [Expression vector pcDNA3-hFIX]
 gi|114846018|gb|ABI82030.1| beta-lactamase [Cloning vector pABC3]
 gi|114846021|gb|ABI82032.1| beta-lactamase [Cloning vector pABC3-His]
 gi|114846024|gb|ABI82034.1| beta-lactamase [Cloning vector pABC3-Cys]
 gi|114846027|gb|ABI82036.1| beta-lactamase [Cloning vector pABC3-HisCys]
 gi|114846318|gb|ABI82038.1| beta-lactamase [Cloning vector pABC3-FlagHis]
 gi|114846322|gb|ABI82041.1| beta-lactamase [Cloning vector pABC3-Gfp]
 gi|114846326|gb|ABI82044.1| beta-lactamase [Cloning vector pABC3-mRfp]
 gi|114846329|gb|ABI82046.1| beta-lactamase [Cloning vector pABC5']
 gi|114846332|gb|ABI82048.1| beta-lactamase [Cloning vector pABC5'-His]
 gi|114846335|gb|ABI82050.1| beta-lactamase [Cloning vector pABC5'-Cys]
 gi|114846640|gb|ABI82052.1| beta-lactamase [Cloning vector pABC5'-HisCys]
 gi|114846643|gb|ABI82054.1| beta-lactamase [Cloning vector pABC5'-FlagHis]
 gi|114846647|gb|ABI82057.1| beta-lactamase [Cloning vector pABC5'-Gfp]
 gi|114846651|gb|ABI82060.1| beta-lactamase [Cloning vector pABC5'-mRfp1]
 gi|114846654|gb|ABI82061.1| beta-lactamase [Cloning vector pGEM-S1]
 gi|114846944|gb|ABI82062.1| beta-lactamase [Cloning vector pGEM-WIZ]
 gi|114848843|gb|ABI82063.1| ampicillin resistance protein [Cloning vector pDRIVE]
 gi|115291316|gb|ABI93158.1| ampicillin resistance protein [Cloning vector pOri1]
 gi|115291322|gb|ABI93163.1| ampicillin resistance protein [Cloning vector pCW]
 gi|115291328|gb|ABI93168.1| ampicillin resistance protein [Cloning vector pCW1]
 gi|115291334|gb|ABI93173.1| ampicillin resistance protein [Cloning vector pCW2]
 gi|115342876|gb|ABI94440.1| synthetic beta-lactamase [Firefly luciferase reporter vector
           pGL4.23[luc2/minP]]
 gi|115342879|gb|ABI94442.1| synthetic beta-lactamase [Firefly luciferase reporter vector
           pGL4.24[luc2P/minP]]
 gi|115342882|gb|ABI94444.1| synthetic beta-lactamase [Firefly luciferase reporter vector
           pGL4.25[luc2CP/minP]]
 gi|115342885|gb|ABI94446.1| synthetic beta-lactamase [Firefly luciferase reporter vector
           pGL4.26[luc2/minP/Hygro]]
 gi|115342889|gb|ABI94449.1| synthetic beta-lactamase [Firefly luciferase reporter vector
           pGL4.27[luc2P/minP/Hygro]]
 gi|115342893|gb|ABI94452.1| synthetic beta-lactamase [Firefly luciferase reporter vector
           pGL4.28[luc2CP/minP/Hygro]]
 gi|115342897|gb|ABI94455.1| synthetic beta-lactamase [Firefly luciferase reporter vector
           pGL4.29[luc2P/CRE/Hygro]]
 gi|115342901|gb|ABI94458.1| synthetic beta-lactamase [Firefly luciferase reporter vector
           pGL4.30[luc2P/NFAT-RE/Hygro]]
 gi|115600309|gb|ABJ15761.1| beta lactamase [Cloning vector pQLinkHD]
 gi|115600314|gb|ABJ15765.1| beta lactamase [Cloning vector pQLinkGD]
 gi|115600328|gb|ABJ15770.1| beta lactamase [Cloning vector pQLinkH]
 gi|115600333|gb|ABJ15772.1| beta lactamase [Cloning vector pQLinkG]
 gi|116062035|dbj|BAF34650.1| beta-lactamase [HIV-1 vector pNL-DT5R]
 gi|116600909|gb|ABK01324.1| beta-lactamase [knock-in vector pCSR1]
 gi|116600922|gb|ABK01325.1| beta-lactamase [knock-in vector pCSR1::hph]
 gi|117571416|gb|ABK40092.1| beta-lactamase [Mammalian expression vector pF12A RM Flexi]
 gi|117571423|gb|ABK40097.1| beta-lactamase [Inducible protein expression vector pReg Neo]
 gi|117582002|gb|ABK41446.1| bla [YAC construction vector pRML2]
 gi|117939119|dbj|BAF36708.1| ampicillin resistance protein [Expression vector pCXGFP-1]
 gi|117957127|gb|ABK59032.1| ampicillin resistance protein [BAC cloning vector
           P[acman]-ApR-F-2-5]
 gi|117957131|gb|ABK59034.1| ampicillin resistance protein [BAC cloning vector
           attB-P[acman]-ApR-F-2-5-attB]
 gi|118197019|emb|CAL69695.1| beta-lactamase [Acinetobacter baylyi]
 gi|118200846|gb|ABK79305.1| ampicillin resistance [Cloning/transgenesis vector pBS-C5]
 gi|118200848|gb|ABK79306.1| ampicillin resistance [Cloning/transgenesis vector
           pBS-C5_delta_SphI]
 gi|118200857|gb|ABK79310.1| ampicillin resistance [Cloning/transgenesis vector pCaSpeR5]
 gi|119035843|gb|ABL60858.1| ampicillin resistance [Expression vector pCeMM-NTAP(GS)-Gw]
 gi|119035857|gb|ABL60861.1| ampicillin resistance [Expression vector pCeMM-CTAP(SG)-Gw]
 gi|119443897|gb|ABL75294.1| beta-lactamase [Cloning vector pKOS405-159]
 gi|119443901|gb|ABL75297.1| beta-lactamase [Cloning vector pKOS405-156]
 gi|119514753|gb|ABL76153.1| extended spectrum beta-lactamase [Escherichia coli]
 gi|121763168|gb|ABM65099.1| beta-lactamase [Expression vector pUNIV]
 gi|122893027|gb|ABM67531.1| beta-lactamase [Shuttle vector pLvCmvMYOCDHA]
 gi|123979208|gb|ABM81536.1| TEM extended spectrum beta-lactamase [Escherichia coli]
 gi|123979210|gb|ABM81537.1| TEM extended spectrum beta-lactamase [Escherichia coli]
 gi|124015072|gb|ABM88726.1| beta lactamase [Baculovirus expression/transfer vector pFB-LIC-Bse]
 gi|124109224|gb|ABM91081.1| beta lactamase precursor [Cloning vector pQLinkN]
 gi|124109386|gb|ABM91086.1| beta lactamase [Cloning vector pAAV-EF1alpha-hFAH.AOS2]
 gi|124302113|gb|ABN05235.1| beta-lactamase [Yeast tagging vector pFA6a-VN-His3MX6]
 gi|124302116|gb|ABN05237.1| beta-lactamase [Yeast tagging vector pFA6a-VC-His3MX6]
 gi|124302119|gb|ABN05239.1| beta-lactamase [Yeast tagging vector pFA6a-VN-TRP1]
 gi|124302121|gb|ABN05240.1| beta-lactamase [Yeast tagging vector pFA6a-His3MX6-pGAL1-VC]
 gi|124302124|gb|ABN05242.1| beta-lactamase [Yeast tagging vector pFA6a-TRP1-pGAL1-VN]
 gi|124302128|gb|ABN05245.1| beta-lactamase [Yeast tagging vector pFA6a-VC-TRP1]
 gi|124302131|gb|ABN05247.1| beta-lactamase [Yeast tagging vector pFA6a-VN-kanMX6]
 gi|124302134|gb|ABN05249.1| beta-lactamase [Yeast tagging vector pFA6a-VC-kanMX6]
 gi|124302136|gb|ABN05250.1| beta-lactamase [Yeast tagging vector pFA6a-His3MX6-pGAL1-VN]
 gi|124302139|gb|ABN05252.1| beta-lactamase [Yeast tagging vector pFA6a-TRP1-pGAL1-VC]
 gi|124302142|gb|ABN05254.1| beta-lactamase [Yeast tagging vector pFA6a-kanMX6-pGAL1-VN]
 gi|124302145|gb|ABN05256.1| beta-lactamase [Yeast tagging vector pFA6a-kanMX6-pGAL1-VC]
 gi|124302148|gb|ABN05258.1| beta-lactamase [Yeast tagging vector pFA6a-His3MX6-pRPL7B-VN]
 gi|124302151|gb|ABN05260.1| beta-lactamase [Yeast tagging vector pFA6a-His3MX6-pRPL7B-VC]
 gi|124302154|gb|ABN05262.1| beta-lactamase [Yeast tagging vector pFA6a-TRP1-pRPL7B-VN]
 gi|124302157|gb|ABN05264.1| beta-lactamase [Yeast tagging vector pFA6a-TRP1-pRPL7B-VC]
 gi|124302160|gb|ABN05266.1| beta-lactamase [Yeast tagging vector pFA6a-kanMX6-pRPL7B-VN]
 gi|124302163|gb|ABN05268.1| beta-lactamase [Yeast tagging vector pFA6a-kanMX6-pRPL7B-VC]
 gi|124361324|gb|ABN09230.1| beta-lactamase [Cloning vector pLvCmvLacZ.Gfp]
 gi|124361329|gb|ABN09233.1| beta-lactamase [Cloning vector pLvCmvMyocardin.Gfp]
 gi|124365229|gb|ABN09639.1| AmpR [Yeast centromeric expression vector p416CYC]
 gi|124365232|gb|ABN09641.1| AmpR [Yeast centromeric expression vector p416TEF]
 gi|124365834|gb|ABN09912.1| beta-lactamase [Retroviral cloning vector LB-G]
 gi|125743122|gb|ABN54771.1| beta-lactamase [Expression vector pUC19-T7pol-lacI-lys]
 gi|125971757|gb|ABN58900.1| beta-lactamase [Expression vector pETHSUL]
 gi|125971762|gb|ABN58904.1| beta-lactamase [Expression vector pETS2SUL]
 gi|125971768|gb|ABN58909.1| beta-lactamase [Expression vector pASHSUL]
 gi|125971773|gb|ABN58913.1| beta-lactamase [Expression vector pASS2SUL]
 gi|125976352|gb|ABN59502.1| ampicillin resistance protein [Cloning vector pSAT6-DEST-EYFP-C1]
 gi|125976357|gb|ABN59506.1| ampicillin resistance protein [Cloning vector pSAT6-DEST-ECFP-C1]
 gi|125976362|gb|ABN59510.1| ampicillin resistance protein [Cloning vector pSAT6-DEST-RFP-C1]
 gi|125976367|gb|ABN59514.1| ampicillin resistance [Cloning vector pSAT6A-DEST-RFP-N1]
 gi|125976372|gb|ABN59518.1| ampicillin resistance protein [Cloning vector pSAT6A-DEST-ECFP-N1]
 gi|125976377|gb|ABN59522.1| ampicillin resistance protein [Cloning vector pSAT6A-DEST-EGFP-N1]
 gi|125976382|gb|ABN59526.1| ampicillin resistance protein [Cloning vector pSAT6-DEST-RFP-N1]
 gi|125976386|gb|ABN59529.1| Amp [Cloning vector pSAT6-DEST]
 gi|125976390|gb|ABN59532.1| Amp [Cloning vector pSAT6A-DEST]
 gi|125976392|gb|ABN59533.1| ampicillin resistance protein [Cloning vector pSAT6A-MCS]
 gi|126165443|gb|ABN80179.1| beta-lactamase [Expression vector pOPING]
 gi|126165445|gb|ABN80180.1| beta-lactamase [Expression vector pOPINJ]
 gi|126165447|gb|ABN80181.1| beta-lactamase [Expression vector pOPINM]
 gi|126165449|gb|ABN80182.1| beta-lactamase [Expression vector pOPINE]
 gi|126165451|gb|ABN80183.1| beta-lactamase [Expression vector pOPINF]
 gi|126636211|gb|ABO25746.1| beta lactamase precursor [Cloning vector pQTEV2]
 gi|129278853|gb|ABO28856.1| beta-lactamase [Cloning vector pD-Nus1]
 gi|133854399|gb|ABO39208.1| beta-lactamase [Cloning vector pJY-mini-Tn7T-Sm]
 gi|133854409|gb|ABO39211.1| beta-lactamase [Cloning vector pJY-mini-Tn7T-gus-Sm]
 gi|134105592|gb|ABO60940.1| beta-lactamase [Baculovirus expression/transfer vector pFBOH-LIC]
 gi|134285023|gb|ABO69572.1| beta lactamase [pGERM gene disruption vector]
 gi|134307085|gb|ABO72540.1| beta-lactamase [Integrative expression vector pFPN]
 gi|138375568|gb|ABO76906.1| beta-lactamase [Cloning vector GWluc-basic]
 gi|138375583|gb|ABO76909.1| ampicillin resistance protein [Expression vector pCeMM-NTAP(GS)]
 gi|138375597|gb|ABO76912.1| ampicillin resistance protein [Expression vector pCeMM-CTAP(SG)]
 gi|138754326|emb|CAL59731.1| beta-lactamase [Cloning vector pSC101BADgbaA-ISceI(amp)]
 gi|144227900|gb|ABO93510.1| beta-lactamase [Yeast integrative vector pINTyrA]
 gi|144227902|gb|ABO93511.1| beta-lactamase [Yeast integrative vector pINTyrB]
 gi|144227904|gb|ABO93512.1| beta-lactamase [Yeast integrative vector pINTyrC]
 gi|144227907|gb|ABO93514.1| beta-lactamase [Yeast integrative vector pINTyrD]
 gi|145284372|gb|ABP51952.1| beta lactamase [Cloning vector pRPGSM]
 gi|145308248|gb|ABP57387.1| AmpR [Shuttle vector pYESDR196]
 gi|145308254|gb|ABP57392.1| AmpR [Shuttle vector pGWFDR196]
 gi|145308260|gb|ABP57397.1| AmpR [Shuttle vector pFGWDR196]
 gi|145423881|gb|ABP68578.1| beta-lactamase [Yeast tagging vector pFA6a-His3MX6-pCET1-VN]
 gi|145423884|gb|ABP68580.1| beta-lactamase [Yeast tagging vector pFA6a-His3MX6-pCET1-VC]
 gi|145423887|gb|ABP68582.1| beta-lactamase [Yeast tagging vector pFA6a-TRP1-pCET1-VN]
 gi|145423890|gb|ABP68584.1| beta-lactamase [Yeast tagging vector pFA6a-TRP1-pCET1-VC]
 gi|145423893|gb|ABP68586.1| beta-lactamase [Yeast tagging vector pFA6a-kanMX6-pCET1-VN]
 gi|145423896|gb|ABP68588.1| beta-lactamase [Yeast tagging vector pFA6a-kanMX6-pCET1-VC]
 gi|145834039|gb|ABP96790.1| beta-lactamase [Cloning vector pHyVec7]
 gi|145849102|emb|CAM91299.1| beta-lactamase [Cloning vector pBLCAT3T]
 gi|146189494|emb|CAM91222.1| beta lactamase [Cloning vector pZEU]
 gi|146189497|emb|CAM91224.1| bla [Cloning vector pZEL]
 gi|146189500|emb|CAM91226.1| beta lactamase [Cloning vector pZEA]
 gi|146189504|emb|CAM91743.1| beta lactamase [Expression vector pZCRE]
 gi|146189508|emb|CAM91746.1| beta lactamase [Expression vector pZGFP]
 gi|146189511|emb|CAM91748.1| beta lactamase [Cloning vector pZCA]
 gi|146189514|emb|CAM91750.1| beta lactamase [Cloning vector pZCAL]
 gi|146189517|emb|CAM91752.1| beta lactamase [Cloning vector pZCAA]
 gi|146189590|emb|CAM92323.1| beta-lactamase [Cloning vector pBLCAT3T-p1]
 gi|146189593|emb|CAM92325.1| beta-lactamase [Cloning vector pBLCAT3T-p3]
 gi|146189596|emb|CAM92327.1| beta-lactamase [Cloning vector pBLCAT3T-p4]
 gi|146189599|emb|CAM92329.1| beta-lactamase [Cloning vector pBLCAT3T-p5]
 gi|146189602|emb|CAM92331.1| beta-lactamase [Cloning vector pBLCAT3T-NP191]
 gi|146189605|emb|CAM92333.1| beta-lactamase [Cloning vector pBLCAT3T-NP192]
 gi|146272044|emb|CAM91985.1| beta lactamase [Expression vector pCUG6]
 gi|146455413|dbj|BAF62257.1| unnamed protein product [Gene silencing vector pSilent-1]
 gi|146743449|gb|ABQ43173.1| AmpR [Plant transit expression vector pSAT6-EGFP-Ca]
 gi|146743452|gb|ABQ43175.1| AmpR [Plant transit expression vector pSAT6-EGFP-Cb]
 gi|146743455|gb|ABQ43177.1| AmpR [Plant transit expression vector pSAT6-EGFP-Cc]
 gi|146760340|dbj|BAF62422.1| beta-lactamase [PCR template vector pTF101]
 gi|146760343|dbj|BAF62424.1| beta-lactamase [PCR template vector pTF103]
 gi|146760346|dbj|BAF62426.1| beta-lactamase [PCR template vector pTF102]
 gi|146760349|dbj|BAF62428.1| beta-lactamase [PCR template vector pTF104]
 gi|147842915|dbj|BAF62545.1| beta-lactamase [synthetic construct]
 gi|148466472|gb|ABQ65202.1| beta-lactamase [Cloning vector pIPKTA30N]
 gi|149999562|gb|ABR53873.1| beta-lactamase [cloning vector pJET1.2]
 gi|152014022|gb|ABS20113.1| beta-lactamase [Shuttle vector pLvCmvMYOCD2aHA]
 gi|152955956|emb|CAO79589.1| beta-lactamase [Cloning vector pDH51-GW-CFP]
 gi|152955961|emb|CAO79593.1| beta-lactamase [Cloning vector pDH51-GW-YFP]
 gi|152955966|emb|CAO79597.1| beta-lactamase [Cloning vector pDH51-GW-EGFP]
 gi|154814567|gb|ABS87326.1| beta-lactamase [Cloning vector pCPP5249]
 gi|154814571|gb|ABS87329.1| beta-lactamase [Cloning vector pCPP5250]
 gi|154814574|gb|ABS87331.1| Bla [Cloning vector pCPP5209]
 gi|154814578|gb|ABS87334.1| beta-lactamase [Cloning vector pCPP5212]
 gi|154814581|gb|ABS87336.1| Bla [Cloning vector pCPP5242]
 gi|154814585|gb|ABS87339.1| beta-lactamase [Cloning vector pCPP5243]
 gi|154845478|gb|ABS88290.1| beta-lactamase [Cloning vector pELI3.1]
 gi|154918187|gb|ABS88737.1| beta-lactamase [shuttle vector pUCP18-RedS]
 gi|155733548|gb|ABU39918.1| ampicillin resistance protein [Cloning vector pSAT4.35S.RNAi]
 gi|155733550|gb|ABU39919.1| ampicillin resistance protein [cloning vector pSAT3.masP.RNAi]
 gi|155733552|gb|ABU39920.1| ampicillin resistance protein [Cloning vector pSAT6.supP.RNAi]
 gi|155733554|gb|ABU39921.1| ampicillin resistance protein [Cloning vector pSAT6.35S.RNAi]
 gi|155733556|gb|ABU39922.1| ampicillin resistance protein [Cloning vector pSAT6.masP.RNAi]
 gi|155733558|gb|ABU39923.1| ampicillin resistance protein [Cloning vector pSAT6.rbcP.RNAi]
 gi|155733560|gb|ABU39924.1| ampicillin resistance protein [Cloning vector pSAT5.nosP.RNAi]
 gi|156104662|emb|CAO91537.1| beta-lactamase [Cloning vector pDH51-GW-YFPn]
 gi|156104667|emb|CAO91541.1| beta-lactamase [Cloning vector pDH51-GW-YFPc]
 gi|156523807|gb|ABU68996.1| bata-lactamase [Cloning vector pHB168-66]
 gi|156630249|gb|ABU89801.1| ampicillin resistance protein [Cloning vector
           pattP-ampicillin-attP]
 gi|157058856|gb|ABV03162.1| beta lactamase [Cloning vector JSC]
 gi|157064990|gb|ABV04339.1| beta-lactamase [Cloning vector pCM433]
 gi|157091289|gb|ABV21784.1| beta-lactamase [CMV Flexi Vector pFC14A (HaloTag 7)]
 gi|157165876|gb|ABV25014.1| ampicillin resistance protein [Cloning vector pTriplEx2]
 gi|157272165|gb|ABV26714.1| beta-lactamase [Neurospora expression vector pYFP]
 gi|157272167|gb|ABV26715.1| beta-lactamase [Neurospora expression vector pYFPN]
 gi|157272169|gb|ABV26716.1| beta-lactamase [Neurospora expression vector pYFPC]
 gi|157739378|gb|ABV69054.1| beta-lactamase [Cloning vector pAAV-ISceI.AO3]
 gi|158327644|emb|CAO81986.1| beta-lactamase [Reporter vector pCH2B]
 gi|158327648|emb|CAO81989.1| beta-lactamase [Reporter vector pYH2A]
 gi|158343351|gb|ABW35342.1| beta-lactamase [Tn7 transposase expression vector pTNS3]
 gi|158343358|gb|ABW35348.1| beta-lactamase [Kanamycin resistance FRT vector pFKM2]
 gi|158343360|gb|ABW35349.1| beta-lactamase [Kanamycin resistance loxP vector pLKM1]
 gi|158343363|gb|ABW35351.1| beta-lactamase [Zeocin resistance loxP vector pLZE1]
 gi|158343366|gb|ABW35353.1| beta-lactamase [loxP vector pLOX1]
 gi|158343393|gb|ABW35375.1| beta-lactamase [Transposition vector pUC18T-mini-Tn7T-Zeo::loxP]
 gi|158343396|gb|ABW35377.1| beta-lactamase [Transposition vector pUC18T-mini-Tn7T-Km::loxP]
 gi|158426711|gb|ABW38022.1| beta-lactamase [Cloning vector pHyVec11]
 gi|158516880|gb|ABW70116.1| ampicillin resistance protein [Cloning vector pSB156]
 gi|158534338|gb|ABW71927.1| beta-lactamase [Mammalian expression vector pNBioSec]
 gi|158536735|gb|ABW72884.1| beta-lactamase [Expression vector pKLAC2]
 gi|159131950|gb|ABW88016.1| beta-lactamase [Cloning vector pEASY-T1]
 gi|159149198|gb|ABW91162.1| beta lactamase [Transposition Vector MightyMu_ACT]
 gi|159149201|gb|ABW91164.1| beta lactamase [Transposition Vector MightyMu_GUSB]
 gi|159149203|gb|ABW91165.1| beta lactamase [Transposition Vector MightyMu_GUSA]
 gi|159159447|gb|ABW94986.1| beta-lactamase [Transposition vector pUC18T-mini-Tn7T-Km::FRT]
 gi|160688651|gb|ABX45106.1| B-lactamase [Broad host range reporter vector pMJ445]
 gi|160714701|gb|ABX47152.1| beta-lactamase [Cloning vector pVMG-TnpR]
 gi|160714707|gb|ABX47157.1| beta-lactamase [Cloning vector pVMGCRT85]
 gi|160714748|gb|ABX47170.1| beta-lactamase [Yeast tagging vector pFA6a-GFP-KlURA3]
 gi|160714751|gb|ABX47172.1| beta-lactamase [Yeast tagging vector pFA6a-TAP-KlURA3]
 gi|160714754|gb|ABX47174.1| beta-lactamase [Yeast tagging vector pFA6a-GST-KlURA3]
 gi|160714757|gb|ABX47176.1| beta-lactamase [Yeast tagging vector pFA6a-myc-KlURA3]
 gi|160714760|gb|ABX47178.1| beta-lactamase [Yeast tagging vector pFA6a-HA-KlURA3]
 gi|160892423|gb|ABX52090.1| beta-lactamase [FRT source vector pFRT3]
 gi|160892427|gb|ABX52093.1| beta-lactamase [Expression vector pUC18T-mini-Tn7T-LAC-Gm]
 gi|161085612|dbj|BAF93888.1| beta-lactamase [Suicide vector pYMD1]
 gi|161375738|gb|ABX71214.1| AmpR [Cloning vector pXEN]
 gi|161375740|gb|ABX71215.1| AmpR [Cloning vector pXEN-pQ108]
 gi|163929660|dbj|BAF95892.1| beta-lactamase [Cloning vector pHIT88]
 gi|163943733|gb|ABY48989.1| beta-lactamase [CMVd1 Flexi Vector pFC15A (HaloTag 7)]
 gi|163943739|gb|ABY48993.1| beta-lactamase [CMVd2 Flexi Vector pFC16A (HaloTag 7)]
 gi|163943745|gb|ABY48997.1| beta-lactamase [CMVd3 Flexi Vector pFC17A (HaloTag 7)]
 gi|163955600|gb|ABY49798.1| AmpR [Cloning vector pUASpDir]
 gi|164470294|gb|ABY57991.1| beta-lactamase [Cloning vector pWFRT-mer]
 gi|164470299|gb|ABY57995.1| beta-lactamase [Cloning vector pWFRT-tel]
 gi|164470309|gb|ABY58002.1| beta-lactamase [Cloning vector pGFPm-T]
 gi|164499366|gb|ABY59253.1| beta-lactamase [Cloning vector pRL446]
 gi|164600702|gb|ABY61790.1| Bla [FRT-Tp-FRT expression vector pwFRT-PCS12-Tp]
 gi|165909630|gb|ABY73724.1| beta-lactamase [Cloning vector pEX18Ap-pheS]
 gi|165940588|gb|ABY75239.1| beta-lactamase [Yeast tagging vector pFA6a-FLAG-KlURA3]
 gi|165940639|gb|ABY75255.1| beta-lactamase [Cloning vector pUC57-Bt-pheS]
 gi|166163670|gb|ABY83637.1| beta-lactamase [Shuttle vector pZJY41]
 gi|166163674|gb|ABY83640.1| beta-lactamase [Shuttle vector pZJY156]
 gi|167650947|gb|ABZ90952.1| beta-lactamase [Cloning vector pBC542]
 gi|169068002|gb|ACA42566.1| ampicillin resistance protein [Cloning vector pCa4B]
 gi|169068004|gb|ACA42567.1| ampicillin resistance protein [Cloning vector pCa4B2G]
 gi|169068006|gb|ACA42568.1| ampicillin resistance protein [Transformation vector
           pCa4B::UAS-luciferase]
 gi|169068009|gb|ACA42570.1| ampicillin resistance protein [Transformation vector
           pCa4B::UAS-NotchRNAi]
 gi|169068011|gb|ACA42571.1| ampicillin resistance protein [Transformation vector
           pCa4B2G-UAS::luciferase]
 gi|169159123|dbj|BAG12080.1| beta-lactamase [Reporter plasmid pSUR]
 gi|169656100|gb|ACA62827.1| beta-lactamase [synthetic construct]
 gi|169822913|gb|ACA96517.1| beta-lactamase [Expression vector pYB100]
 gi|169881902|gb|ACA96989.1| beta-lactamase [Expression vector pRESQ101]
 gi|169881905|gb|ACA96991.1| beta-lactamase [Expression vector pRESQ70]
 gi|169921145|gb|ACB05483.1| beta-lactamase [BioBrick base vector BBa_I51020]
 gi|169921148|gb|ACB05485.1| beta-lactamase [BioBrick cloning vector pSB4A5-I52002]
 gi|170774033|gb|ACB32236.1| beta-lactamase [Gene silencing vector pJRTCLCrVA.008]
 gi|170774039|gb|ACB32241.1| beta-lactamase [Gene silencing vector pJRTCLCrVA.009]
 gi|171188277|gb|ACB41734.1| beta-lactamase [Shuttle vector pMK4]
 gi|171188285|gb|ACB41741.1| beta-lactamase [Shuttle vector pMK3]
 gi|171193991|gb|ACB45182.1| beta-lactamase [Cloning vector pMQ2]
 gi|171198201|gb|ACB45424.1| beta lactamase [Shuttle vector pUCG18]
 gi|171466749|gb|ACB46535.1| beta-lactamase [CAT-levansucrase counter-selection vector pLOI4162]
 gi|182410404|gb|ACB88209.1| Amp [Chloroplast transformation Vector pTox]
 gi|183013546|gb|ACC38296.1| beta-lactamase [Cloning vector pBGT1]
 gi|183014373|dbj|BAG24285.1| beta-lactamase [Shuttle vector pRS414PTadh]
 gi|183014376|dbj|BAG24287.1| beta-lactamase [Shuttle vector pRS414TPadh]
 gi|183181584|gb|ACC44848.1| synthetic beta-lactamase resistance protein [Firefly luciferase
           reporter vector pGL4.32[luc2P/NFkB-RE/Hygro]]
 gi|186470147|gb|ACC85621.1| beta-lactamase [T7 Flexi Vector pFN18A (HaloTag 7)]
 gi|186470153|gb|ACC85625.1| beta-lactamase [T7 SP6 Flexi Vector pFN19A (HaloTag 7)]
 gi|186470159|gb|ACC85629.1| beta-lactamase [T7 SP6 Flexi Vector pFC20A (HaloTag 7)]
 gi|186702984|gb|ACC91726.1| beta-lactamase [Cloning vector pSB4234]
 gi|186703044|gb|ACC91757.1| ampicillin resistance protein [Cloning vector pWSTK2]
 gi|186703050|gb|ACC91762.1| ampicillin resistance protein [Cloning vector pWSTK3]
 gi|186703060|gb|ACC91770.1| ampicillin resistance protein [Cloning vector pEGFPpA-ACN]
 gi|186703065|gb|ACC91774.1| ampicillin resistance protein [Cloning vector pECFPpA-ACN]
 gi|186703070|gb|ACC91778.1| ampicillin resistance protein [Cloning vector pAP-ACN]
 gi|186703075|gb|ACC91782.1| ampicillin resistance protein [Cloning vector pnlslacZ-ACN]
 gi|186703080|gb|ACC91786.1| ampicillin resistance protein [Cloning vector pEYFPpA-ACN]
 gi|187372914|gb|ACD03182.1| beta-lactamase [Tagging vector pFA6a-KanMX6-P3nmt1-3FLAG]
 gi|187372918|gb|ACD03185.1| beta-lactamase [Tagging vector pFA6a-KanMX6-P41nmt1-3FLAG]
 gi|187372922|gb|ACD03188.1| beta-lactamase [Tagging vector pFA6a-KanMX6-P81nmt1-3FLAG]
 gi|187372926|gb|ACD03191.1| beta-lactamase [Tagging vector pFA6a-his3-P3nmt1-3FLAG]
 gi|187372930|gb|ACD03194.1| beta-lactamase [Tagging vector pFA6a-his3-P41nmt1-3FLAG]
 gi|187372934|gb|ACD03197.1| beta-lactamase [Tagging vector pFA6a-his3-P81nmt1-3FLAG]
 gi|187372940|gb|ACD03202.1| beta-lactamase [Tagging vector pFA6a-5FLAG-kanMX6]
 gi|187372944|gb|ACD03205.1| beta-lactamase [Tagging vector pFA6a-5FLAG-hphMX6]
 gi|187372948|gb|ACD03208.1| beta-lactamase [Tagging vector pFA6a-5FLAG-natMX6]
 gi|187373059|gb|ACD03263.1| beta-lactamase class A [Cloning vector p7Z6]
 gi|187373061|gb|ACD03264.1| PenP [Cloning vector p7S6]
 gi|187710955|gb|ACD14088.1| beta-lactamase [Cloning vector pFY20]
 gi|189038585|gb|ACD75465.1| ampicillin resistance protein [Expression vector pESPBAC]
 gi|189094761|emb|CAQ57440.1| beta lactamase [Trypanosoma brucei brucei]
 gi|190692995|gb|ACE88256.1| beta-lactamase [Expression vector pOPING-ET]
 gi|190692997|gb|ACE88257.1| beta-lactamase [Expression vector pOPINVH]
 gi|190692999|gb|ACE88258.1| beta-lactamase [Expression vector pOPINVL]
 gi|190888542|gb|ACE95897.1| Beta-lactamase [Cloning vector pGloSensor-10F]
 gi|190888545|gb|ACE95899.1| beta-lactamase [Cloning vector pGloSensor-10F[TEV]]
 gi|192757948|gb|ACF04936.1| beta-lactamase [Template plasmid pCLF3]
 gi|192757951|gb|ACF04938.1| beta-lactamase [Template plasmid pCLF4]
 gi|193246596|gb|ACF17165.1| ampicillin resistance protein [Yeast selection vector pIS418]
 gi|193246599|gb|ACF17167.1| ampicillin resistance protein [Yeast selection vector pIS419]
 gi|193246602|gb|ACF17169.1| ampicillin resistance protein [Yeast selection vector pIS420]
 gi|193246605|gb|ACF17171.1| ampicillin resistance protein [Yeast selection vector pIS421]
 gi|193246608|gb|ACF17173.1| ampicillin resistance protein [Yeast selection vector pIS438]
 gi|193299421|gb|ACF17853.1| Bla [Escherichia-Pseudomonas shuttle vector pHERD20T]
 gi|193870784|gb|ACF22982.1| beta-lactamase [CMV Flexi Vector pFN21A (HaloTag 7)]
 gi|193870790|gb|ACF22986.1| beta-lactamase [CMVd1 Flexi Vector pFN22A (HaloTag 7)]
 gi|193870796|gb|ACF22990.1| beta-lactamase [CMVd2 Flexi Vector pFN23A (HaloTag 7)]
 gi|193870802|gb|ACF22994.1| beta-lactamase [CMVd3 Flexi Vector pFN24A (HaloTag 7)]
 gi|194032784|emb|CAQ77012.1| beta-lactamase [Shuttle vector pNEV-E]
 gi|194032787|emb|CAQ77014.1| beta-lactamase [Shuttle vector pNEV-N]
 gi|194473372|emb|CAR31382.1| ampicilin resistance protein [PCR template vector pZC1]
 gi|194473375|emb|CAR31384.1| ampicilin resistance protein [PCR template vector pZC2]
 gi|194473378|emb|CAR31386.1| ampicilin resistance protein [PCR template vector pZC3]
 gi|194473381|emb|CAR31388.1| ampicilin resistance protein [PCR template vector pZC4]
 gi|194473385|emb|CAR31391.1| ampicilin resistance protein [Recombinase expression vector
           pCre-ble]
 gi|194579640|gb|ACF75743.1| beta-lactamase [expression vector pGloSensor-20F cAMP]
 gi|194716694|gb|ACF93190.1| beta-lactamase [Flexi vector pF25A/BR610]
 gi|194716700|gb|ACF93194.1| beta-lactamase [Luciferase ICE T7 Control vector]
 gi|195972363|gb|ACG61340.1| Bla [Expression vector pYAA-ZP-MCS]
 gi|195972447|gb|ACG61351.1| beta-lactamase class A [Expression vector pTSC]
 gi|196475279|gb|ACG76133.1| beta-lactamase [cloning vector pFloxin]
 gi|196475281|gb|ACG76134.1| beta-lactamase [cloning vector pFloxin-IRES]
 gi|196475283|gb|ACG76135.1| beta-lactamase [cloning vector pFloxin-TAP]
 gi|196968520|gb|ACG80831.1| penicillin beta-lactamase [Expression vector pDM310]
 gi|196968527|gb|ACG80837.1| penicillin beta-lactamase [Expression vector pDM359]
 gi|196968534|gb|ACG80843.1| penicillin beta-lactamase [Expression vector pDM360]
 gi|196968541|gb|ACG80849.1| penicillin beta-lactamase [Expression vector pDM309]
 gi|197215835|gb|ACH53165.1| beta-lactamase [Luciferase reporter vector pGL4.50[luc2/CMV/Hygro]]
 gi|197215839|gb|ACH53168.1| beta-lactamase [Firefly luciferase reporter vector
           pGL4.51[luc2/CMV/Neo]]
 gi|197223714|gb|ACH53386.1| beta-lactamase [Tagging vector pFA6a-5FLAG-bleMX6]
 gi|197223716|gb|ACH53387.1| beta-lactamase [Tagging vector pFA6a-natMX6-P3nmt1-3FLAG]
 gi|197223720|gb|ACH53390.1| beta-lactamase [Tagging vector pFA6a-natMX6-P41nmt1-3FLAG]
 gi|197223724|gb|ACH53393.1| beta-lactamase [Tagging vector pFA6a-natMX6-P81nmt1-3FLAG]
 gi|197223728|gb|ACH53396.1| beta-lactamase [Tagging vector pFA6a-hphMX6-P3nmt1-3FLAG]
 gi|197223732|gb|ACH53399.1| beta-lactamase [Tagging vector pFA6a-hphMX6-P41nmt1-3FLAG]
 gi|197223736|gb|ACH53402.1| beta-lactamase [Tagging vector pFA6a-hphMX6-P81nmt1-3FLAG]
 gi|197223740|gb|ACH53405.1| beta-lactamase [Tagging vector pFA6a-bleMX6-P3nmt1-3FLAG]
 gi|197223744|gb|ACH53408.1| beta-lactamase [Tagging vector pFA6a-bleMX6-P41nmt1-3FLAG]
 gi|197223748|gb|ACH53411.1| beta-lactamase [Tagging vector pFA6a-bleMX6-P81nmt1-3FLAG]
 gi|197223752|gb|ACH53414.1| beta-lactamase [Tagging vector pFA6a-kanMX6-Purg1-3FLAG]
 gi|197223756|gb|ACH53417.1| beta-lactamase [Tagging vector pFA6a-natMX6-Purg1-3FLAG]
 gi|197223760|gb|ACH53420.1| beta-lactamase [Tagging vector pFA6a-hphMX6-Purg1-3FLAG]
 gi|197223764|gb|ACH53423.1| beta-lactamase [Tagging vector pFA6a-bleMX6-Purg1-3FLAG]
 gi|197322810|gb|ACH69156.1| ampicillin resistance protein [Shuttle vector pRS415]
 gi|197342845|gb|ACH69349.1| ampicillin resistance protein [Cloning vector pMAK27]
 gi|197693457|gb|ACH71402.1| beta-lactamase [Dicistronic cloning vector pXLJ Con]
 gi|197693461|gb|ACH71405.1| beta-lactamase [Dicistronic cloning vector pXL-Id]
 gi|198078136|gb|ACH81548.1| penicillin beta-lactamase [Expression vector pDM304]
 gi|198078143|gb|ACH81554.1| penicillin beta-lactamase [Expression vector pDM320]
 gi|198078149|gb|ACH81559.1| penicillin beta-lactamase [Expression vector pDM326]
 gi|198078155|gb|ACH81564.1| penicillin beta-lactamase [Expression vector pDM358]
 gi|198078159|gb|ACH81567.1| penicillin beta-lactamase [Cloning vector 1-21]
 gi|198078162|gb|ACH81569.1| penicillin beta-lactamase [Cloning vector pDM313]
 gi|198078165|gb|ACH81571.1| penicillin beta-lactamase [Cloning vector pDM131]
 gi|198078168|gb|ACH81573.1| penicillin beta-lactamase [Cloning vector pDM312]
 gi|198078170|gb|ACH81574.1| penicillin beta-lactamase [Cloning vector pDM229]
 gi|198079172|gb|ACH81575.1| penicillin beta-lactamase [Cloning vector pDM276]
 gi|198079175|gb|ACH81577.1| penicillin beta-lactamase [Cloning vector pDM193]
 gi|198079179|gb|ACH81580.1| penicillin beta-lactamase [Cloning vector pDM347]
 gi|207339213|gb|ACI23597.1| ampicillin resistance protein [Integrating YFP promoter analysis
           vector pJG100]
 gi|209403506|gb|ACI46134.1| beta-lactamase [Expression vector pKLMF-EK]
 gi|209403510|gb|ACI46137.1| beta-lactamase [Expression vector pKLMF-FX]
 gi|209403514|gb|ACI46140.1| beta-lactamase [Expression vector pKLAC1-Gluc]
 gi|209981403|gb|ACJ05374.1| beta-lactamase [Yeast tagging vector pTAPKan1]
 gi|210151264|gb|EEA82272.1| hypothetical protein CLONEX_01829 [Clostridium nexile DSM 1787]
 gi|212717247|gb|ACJ37465.1| beta-lactamase [Cloning vector pmirGLO]
 gi|212725372|gb|ACJ38093.1| penicillin beta-lactamase [Shuttle vector NgoMIV]
 gi|215789972|gb|ACJ70056.1| Bla [Cloning vector pwFRT-GSr]
 gi|217030808|dbj|BAH02681.1| beta-lactamase [Mammalian expression vector pmAlbEPintPlauGH]
 gi|220942110|dbj|BAH11109.1| beta-lactamase [Suicide vector pYMD2]
 gi|220978682|gb|ACL97679.1| beta-lactamase [Expression vector pHF5Ca]
 gi|221229251|gb|ACM09996.1| beta-lactamase [Neurospora expression vector pCCG::C-3xFLAG]
 gi|221229253|gb|ACM09997.1| beta-lactamase [Neurospora expression vector pMF270]
 gi|221229255|gb|ACM09998.1| beta-lactamase [Neurospora expression vector pMF276]
 gi|221229257|gb|ACM09999.1| beta-lactamase [Neurospora expression vector pCCG::C-HAT::FLAG]
 gi|221229259|gb|ACM10000.1| beta-lactamase [Yeast shuttle vector pRS416-10xGly]
 gi|221229261|gb|ACM10001.1| beta-lactamase [Neurospora expression vector pCCG::C-Gly::3xFLAG]
 gi|221229263|gb|ACM10002.1| beta-lactamase [Neurospora expression vector pCCG::C-Gly::GFP]
 gi|221229266|gb|ACM10004.1| beta-lactamase [Neurospora expression vector
           pCCG::C-Gly::HAT::FLAG]
 gi|221229268|gb|ACM10005.1| beta-lactamase [Neurospora expression vector pCCG::N-3xFLAG]
 gi|221229270|gb|ACM10006.1| beta-lactamase [Neurospora expression vector pCCG::N-3xMyc]
 gi|221229272|gb|ACM10007.1| beta-lactamase [Neurospora expression vector pCCG::N-GFP]
 gi|221229275|gb|ACM10009.1| beta-lactamase [Neurospora expression vector pCCG::N-FLAG::HAT]
 gi|221229277|gb|ACM10010.1| beta-lactamase [Neurospora expression vector pN-3xHA]
 gi|221229292|gb|ACM10020.1| beta-lactamase [Neurospora expression vector pCCG::Cre]
 gi|221267808|gb|ACM16585.1| beta-lactamase [Expression vector pHF5Na]
 gi|222446256|emb|CAX28479.1| beta-lactamase [Cloning vector pKF-VH]
 gi|222446258|emb|CAX28480.1| beta-lactamase [Cloning vector pKF-VL]
 gi|222446260|emb|CAX28481.1| beta-lactamase [Cloning vector pKF-SC]
 gi|223019788|dbj|BAH22439.1| beta-lactamase [Mammalian expression vector pmAlbEPintUL23GH]
 gi|223364523|gb|ACM86778.1| beta-lactamase [Cloning vector pEG(KT)]
 gi|223364528|gb|ACM86782.1| beta-lactamase [Cloning vector pEG(KG)]
 gi|224180704|gb|ACN39208.1| ampicillin resistance protein [Expression vector pBac0GW]
 gi|224180709|gb|ACN39212.1| ampicillin resistance protein [Expression vector pBacHGW]
 gi|224180714|gb|ACN39216.1| ampicillin resistance protein [Expression vector pBacAGW]
 gi|224180719|gb|ACN39220.1| ampicillin resistance protein [Expression vector pBacRGW]
 gi|224180724|gb|ACN39224.1| ampicillin resistance protein [Expression vector pBacFGW]
 gi|224180729|gb|ACN39228.1| ampicillin resistance protein [Expression vector pBacYGW]
 gi|224180735|gb|ACN39233.1| ampicillin resistance protein [Expression vector pBacGGWH]
 gi|224812560|gb|ACN64935.1| AmpC [Yeast two-hybrid vector pGADCg]
 gi|224812608|gb|ACN64943.1| amp [Targeting vector pP{white-STAR}]
 gi|224998146|gb|ACN77841.1| beta-lactamase resistance protein [Reporter vector
           pGL4.33[luc2P/SRE/Hygro]]
 gi|224998150|gb|ACN77844.1| beta-lactamase resistance protein [Reporter vector
           pGL4.34[luc2P/SRF-RE/Hygro]]
 gi|224998154|gb|ACN77847.1| beta-lactamase resistance protein [Reporter vector
           pGL4.36[luc2P/MMTV/Hygro]]
 gi|225423175|gb|ACN91080.1| beta-lactamase [Site-specific excision vector pBBR1_FLP2]
 gi|225675559|gb|ACO05020.1| AmpR [Transformation vector pTtag]
 gi|225903559|gb|ACO34942.1| beta-lactamase [P element transformation vector pGX-attP]
 gi|225903562|gb|ACO34944.1| beta-lactamase [P element transformation vector pGE-attB]
 gi|225903565|gb|ACO34946.1| beta-lactamase [P element transformation vector pGE-attB-GMR]
 gi|226320340|gb|ACO48264.1| beta-lactamase [Cloning vector pNIGEL19]
 gi|226331123|gb|ACO48267.1| beta-lactamase [Cloning vector pNIGEL07]
 gi|226331127|gb|ACO48270.1| beta-lactamase [Cloning vector pNIGEL17]
 gi|226331131|gb|ACO48273.1| beta-lactamase [Cloning vector pNIGEL18]
 gi|226331139|gb|ACO48276.1| beta-lactamase [Cloning vector pNIGEL09]
 gi|226331142|gb|ACO48278.1| beta-lactamase [Cloning vector pNIGEL11]
 gi|226331145|gb|ACO48280.1| beta-lactamase [Cloning vector pNIGEL13]
 gi|226331149|gb|ACO48283.1| beta-lactamase [Cloning vector pNIGEL15]
 gi|226331153|gb|ACO48286.1| beta-lactamase [Cloning vector pNIGEL16]
 gi|226442584|dbj|BAH56453.1| beta-lactamase [Shuttle vector pLES003]
 gi|227345087|gb|ACP28054.1| ampicillin resistance protein [Expression vector pCEM2]
 gi|227810166|gb|ACP41232.1| beta-lactamase [Cloning vector pARAn58]
 gi|227810169|gb|ACP41234.1| beta-lactamase [Cloning vector pARAn51]
 gi|228484705|gb|ACQ43933.1| beta-lactamase [cloning vector pHC01]
 gi|228484724|gb|ACQ43948.1| beta-lactamase [cloning vector pHC08]
 gi|228484729|gb|ACQ43952.1| beta-lactamase [cloning vector pHC09]
 gi|228484734|gb|ACQ43956.1| beta-lactamase [cloning vector pHC10]
 gi|237652099|gb|ACR08727.1| beta-lactamase [Transient expression vector pXSN]
 gi|237652102|gb|ACR08729.1| beta-lactamase [Transient expression vector pXUN]
 gi|237652105|gb|ACR08731.1| beta-lactamase [Transient expression vector pXSN-FLAG]
 gi|237652108|gb|ACR08733.1| beta-lactamase [Transient expression vector pXUN-FLAG]
 gi|237652111|gb|ACR08735.1| beta-lactamase [Transient expression vector pXSN-HA]
 gi|237652114|gb|ACR08737.1| beta-lactamase [Transient expression vector pXUN-HA]
 gi|237652117|gb|ACR08739.1| beta-lactamase [Transient expression vector pXSN-Myc]
 gi|237652120|gb|ACR08741.1| beta-lactamase [Transient expression vector pXUN-Myc]
 gi|237652123|gb|ACR08743.1| beta-lactamase [Transient expression vector pX-DG]
 gi|237652126|gb|ACR08745.1| beta-lactamase [Transient expression vector pX-DR]
 gi|237652130|gb|ACR08748.1| beta-lactamase [Transient expression vector pXGUS-P]
 gi|237652134|gb|ACR08751.1| beta-lactamase [Transient expression vector pXGFP-P]
 gi|238556226|gb|ACR44993.1| beta-lactamase [Cloning vector pHC36]
 gi|238556230|gb|ACR44996.1| beta-lactamase [Cloning vector pHC38]
 gi|238556234|gb|ACR44999.1| beta-lactamase [Cloning vector pHC40]
 gi|238556239|gb|ACR45003.1| beta-lactamase [Cloning vector pHC65]
 gi|238556243|gb|ACR45006.1| beta-lactamase [Cloning vector pHC67]
 gi|238556247|gb|ACR45009.1| beta-lactamase [Cloning vector pHC68]
 gi|238556251|gb|ACR45012.1| beta-lactamase [Cloning vector pHC82]
 gi|239583491|gb|ACR82774.1| beta-lactamase [Cloning vector Mini-Tn4001PSpuro]
 gi|239819627|gb|ACS28255.1| beta-lactamase [Expression vector pPM2a]
 gi|242277420|gb|ACS91922.1| ampicillin resistance protein [Baculovirus expression vector pLM]
 gi|242277424|gb|ACS91925.1| ampicillin resistance protein [Baculovirus expression vector
           pLM-ITRs]
 gi|253558923|gb|ACT32140.1| AmpR [Cloning vector pDONRamp]
 gi|254028435|gb|ACT53135.1| beta-lactamase [Cloning vector pGL4.35[luc2P/9XGAL4UAS/Hygro]]
 gi|254028439|gb|ACT53138.1| beta-lactamase [Cloning vector pFN26A (BIND) hRluc-neo]
 gi|254028444|gb|ACT53142.1| beta-lactamase [Cloning vector pBIND-ER (alpha)]
 gi|254028449|gb|ACT53146.1| beta-lactamase [Cloning vector pBIND-GR]
 gi|254995966|dbj|BAH86764.1| beta-lactamase [Mammalian expression vector
           pC[Delta]E-chimUAAgaCAA21FLucH]
 gi|254995971|dbj|BAH86768.1| beta-lactamase [Mammalian expression vector pCInx-hRPSIVCAA21FLuc]
 gi|255687927|gb|ACU29448.1| beta-lactamase [Yeast knockout vector pCloneKan1]
 gi|255687930|gb|ACU29450.1| beta-lactamase [Yeast knockout vector pCloneBle1]
 gi|255710029|gb|ACU30839.1| beta-lactamase [Cloning vector pFloxin-IRES-eGFP]
 gi|256384228|gb|ACU78798.1| beta-lactamase TEM (precursor) [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256385060|gb|ACU79629.1| beta-lactamase TEM (precursor) [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256708578|gb|ACV20891.1| beta-lactamase [Bacillus cereus]
 gi|257218581|gb|ACV50008.1| AmpR [Centromeric vector YCp85]
 gi|257218586|gb|ACV50012.1| AmpR [Centromeric vector YCp80]
 gi|257218589|gb|ACV50014.1| AmpR [Episomal vector YEp85]
 gi|257218592|gb|ACV50016.1| AmpR [Episomal vector YEp80]
 gi|257218596|gb|ACV50019.1| AmpR [Expression vector pTL85]
 gi|257218600|gb|ACV50022.1| AmpR [Expression vector pTL80]
 gi|257359585|gb|ACV53160.1| beta lactamase [Expression vector pETUA]
 gi|257767998|dbj|BAI39423.1| beta-lactamase [Expression vector pTY2b]
 gi|258489392|gb|ACV72605.1| beta-lactamase [Cloning vector pmusmtMCS]
 gi|258617572|gb|ACV83806.1| beta-lactamase [Physcomitrella transformation vector
           pBS108-35SNPT-b]
 gi|258642288|gb|ACV85760.1| beta lactamase [Cloning vector pSpark I]
 gi|258642290|gb|ACV85761.1| beta lactamase [Cloning vector pSpark II]
 gi|258642292|gb|ACV85762.1| beta lactamase [Cloning vector pSpark III]
 gi|258642295|gb|ACV85764.1| beta lactamase [Cloning vector pSpark IV]
 gi|258642297|gb|ACV85765.1| beta lactamase [Cloning vector pSpark V]
 gi|259045722|gb|ACV91304.1| beta-lactamase [Cloning vector pMycoPuro]
 gi|259045726|gb|ACV91307.1| beta-lactamase [Cloning vector Mini-Tn4001PStetM]
 gi|259490930|gb|ACW82463.1| beta-lactamase [Cloning vector pFB1SB3Aek]
 gi|259490933|gb|ACW82465.1| beta-lactamase [Cloning vector pFB1SB3Atev]
 gi|259490936|gb|ACW82467.1| beta-lactamase [Cloning vector pFB1SPepB2Atev]
 gi|259490939|gb|ACW82469.1| beta-lactamase [Cloning vector pFB1SGFPB2Atev]
 gi|260101143|gb|ACX31713.1| beta lactamase [Vector pwFRT-PCS12-bar]
 gi|260505639|gb|ACX42262.1| beta-lactamase [Bacterial selection and production vector pMES4]
 gi|260505740|gb|ACX42312.1| beta-lactamase [Recombineering donor plasmid pDOC-C]
 gi|260505743|gb|ACX42314.1| beta-lactamase [Recombineering donor plasmid pDOC-H]
 gi|260505747|gb|ACX42317.1| beta-lactamase [Recombineering donor plasmid pDOC-F]
 gi|260505751|gb|ACX42320.1| beta-lactamase [Recombineering donor plasmid pDOC-P]
 gi|260505756|gb|ACX42324.1| beta-lactamase [Recombineering donor plasmid pDOC-G]
 gi|260779790|gb|ACX50500.1| beta-lactamase [Self-inactivating lentivirus vector
           pLV.C-EF1a.cyt-bGal.dCpG]
 gi|261865411|gb|ACY01942.1| ampR [HIV whole-genome vector AA1305#18]
 gi|262021248|gb|ACY06903.1| beta-lactamase [Poxvirus recombinant transfer vector pSPV-EGFP]
 gi|262117762|dbj|BAI47854.1| beta-lactamase [Helper vector pRH210]
 gi|262217317|gb|ACY38037.1| beta-lactamase [Expression vector pColdI(tet)]
 gi|262217320|gb|ACY38039.1| beta-lactamase [Expression vector pColdII(tet)]
 gi|262217323|gb|ACY38041.1| beta-lactamase [Expression vector pColdIII(tet)]
 gi|262217326|gb|ACY38043.1| beta-lactamase [Expression vector pColdIV(tet)]
 gi|262217329|gb|ACY38045.1| beta-lactamase [Expression vector pColdX(tet)]
 gi|262217332|gb|ACY38047.1| beta-lactamase [Expression vector pColdTEV(tet)]
 gi|262410748|gb|ACY66810.1| beta-lactamase [Cloning vector pLS975]
 gi|262478126|gb|ACY68261.1| beta-lactamase [Integrative vector pBaSysBioII]
 gi|268327065|dbj|BAI49506.1| beta-lactamase [Shuttle vector pYN401]
 gi|273165291|gb|ACZ97630.1| beta-lactamase [Expression vector pGloSensor-22F cAMP]
 gi|273165320|gb|ACZ97633.1| beta-lactamase [Expression vector pGloSensor-21F cAMP]
 gi|281022115|gb|ADA13290.1| Amp [Cloning vector pMN10]
 gi|282161287|gb|ADA79624.1| ampicillin resistance protein [Escherichia coli]
 gi|282161292|gb|ADA79628.1| ampicillin resistance protein [Escherichia coli]
 gi|282161294|gb|ADA79629.1| ampicillin resistance protein [Escherichia coli]
 gi|282161301|gb|ADA79634.1| ampicillin resistance protein [Escherichia coli]
 gi|282952169|emb|CBG37785.1| beta lactamase [Cloning vector pOtox]
 gi|282952174|emb|CBG37787.1| beta lactamase [Cloning vector pOt-luc]
 gi|283467329|emb|CBI83205.1| beta lactamase [Overexpression vector pTA963]
 gi|283467333|emb|CBI83208.1| beta lactamase [Overexpression vector pTA962]
 gi|283467338|emb|CBI83212.1| beta lactamase [Overexpression vector pTA929]
 gi|283467341|emb|CBI83214.1| beta lactamase [Overexpression vector pTA927]
 gi|283467345|emb|CBI83217.1| beta lactamase [Shuttle vector pTA949]
 gi|283825293|gb|ADB43102.1| beta-lactamase [Rabies virus-derived expression vector cSPBN-4GFP]
 gi|283825297|gb|ADB43105.1| beta-lactamase [Rabies virus-derived expression vector pTIT-N]
 gi|283825300|gb|ADB43107.1| beta-lactamase [Rabies virus-derived expression vector pTIT-P]
 gi|283825303|gb|ADB43109.1| beta-lactamase [Rabies virus-derived expression vector pTIT-G]
 gi|283825306|gb|ADB43111.1| beta-lactamase [Rabies virus-derived expression vector pTIT-L]
 gi|283825309|gb|ADB43113.1| beta-lactamase [Expression vector pCAGGS-T7]
 gi|288187153|gb|ADC42095.1| AmpR [Cloning vector pDuExAc6]
 gi|288191516|gb|ADC44106.1| beta-lactamase [Lentivirus shuttle vector pLV.FLPe.PurR]
 gi|288191519|gb|ADC44108.1| beta-lactamase [Lentivirus shuttle vector pLV.FLPe]
 gi|289629475|gb|ADD13584.1| beta-galactosidase [Cloning vector pdsRNA]
 gi|290563697|gb|ADD38966.1| beta-lactamase [Gene replacement vector pwFRT-PCS12-gat-sacB]
 gi|290791121|gb|ADD63341.1| beta-lactamase [Cloning vector pAE1]
 gi|291192148|gb|ADD83136.1| beta-lactamase [Candida integrating/Saccharomyces episomal vector
           CIp10-2my]
 gi|291192152|gb|ADD83139.1| beta-lactamase [Candida integrating/Saccharomyces episomal vector
           CIp20-2my]
 gi|291192156|gb|ADD83142.1| beta-lactamase [Candida integrating/Saccharomyces episomal vector
           CIp30-2my]
 gi|291361504|gb|ADD98905.1| beta-lactamase precursor [Cloning vector pEF-F3-EGFP-F3-mcs]
 gi|291587253|gb|ADE19328.1| bla [Tri-shuttle cloning vector pmycYACTn]
 gi|291587259|gb|ADE19333.1| bla [Tri-shuttle cloning vector MiniTn-Puro-JCVI-1.7]
 gi|292601744|gb|ADE33911.1| beta-lactamase [Broad host range shuttle vector pPMQAK1]
 gi|293339850|gb|ADE44156.1| beta-lactamase [Cloning vector pZK18S/T]
 gi|293628577|dbj|BAJ04916.1| ampicillin resistance protein [Cloning vector pTip-istAB-sacB]
 gi|294653622|gb|ADF28643.1| ampicillin resistant protein [Cloning vector pBac9-PolhEKA]
 gi|294653640|gb|ADF28652.1| beta-lactamase [Expression vector pCDS-At]
 gi|294847566|gb|ADF43790.1| Bla [cloning vector pAB32]
 gi|294847568|gb|ADF43791.1| Bla [cloning vector pAB34]
 gi|294861860|gb|ADF45589.1| beta-lactamase [Expression vector pYM70]
 gi|295126634|gb|ADF80260.1| beta-lactamase [Cloning vector pPM7g]
 gi|296455346|gb|ADH21581.1| beta-lactamase TEM (precursor) [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
 gi|300432110|gb|ADK12946.1| beta lactamase [Fluorescent tagging vector pUC57-Ps12-tag-CFP]
 gi|300432113|gb|ADK12948.1| beta lactamase [Fluorescent tagging vector pUC57-Ps12-turbo-RFP]
 gi|300432116|gb|ADK12950.1| beta lactamase [Fluorescent tagging vector pUC57-PS12-turbo-yfp]
 gi|301341616|gb|ADK73497.1| bla [GFP expression vector pHapII]
 gi|302749841|gb|ADL66929.1| beta-lactamase [Cloning vector pBKS::zeo-ID-hyg]
 gi|304282219|gb|ADM21211.1| beta lactamase [Expression shuttle vector pIMB4]
 gi|304561273|gb|ADM43595.1| AmpR [Cloning vector pSK485]
 gi|305387935|gb|ADM52298.1| beta-lactamase [Cloning vector pZK18S]
 gi|306450677|gb|ADM88583.1| beta-lactamase [Plant binary vector pXNS1pat-Strep]
 gi|306450680|gb|ADM88585.1| beta-lactamase [Plant binary vector pXNS2pat-Strep]
 gi|306450683|gb|ADM88587.1| beta-lactamase [Plant binary vector pXS1pat-Strep]
 gi|306450686|gb|ADM88589.1| beta-lactamase [Plant binary vector pXS2pat-Strep]
 gi|306491147|gb|ADM95142.1| ampicillin resistance determinant [Cloning vector pGFPbglS]
 gi|306491155|gb|ADM95148.1| ampicillin resistance determinant [Cloning vector pYFPbglS]
 gi|306491163|gb|ADM95154.1| ampicillin resistance determinant [Cloning vector pCFPbglS]
 gi|307090022|gb|ADN27524.1| beta-lactamase [HaloTag control vector]
 gi|307639796|gb|ADN83669.1| bla gene-Ap(r) [Wheat transformation vector pghp8.1]
 gi|307639798|gb|ADN83670.1| bla gene-Ap(r) [Wheat transformation vector pGhp-omega/alpha/beta]
 gi|307639800|gb|ADN83671.1| bla gene-Ap(r) [Wheat transformation vector pDhp-omega/alpha/beta]
 gi|307696842|gb|ADN85857.1| beta-lactamase [Phagemid vector pSFMI-lib]
 gi|307696846|gb|ADN85860.1| beta-lactamase [Phagemid vector pSFMI-pro-lib]
 gi|307743214|emb|CBW31011.1| ampicillin resistance protein [Cloning vector for bidirectional
           expression pPMV]
 gi|309274419|gb|ADO63835.1| beta-lactamase [Cloning vector pwFRT-pheS-gat]
 gi|309400218|gb|ADO79535.1| beta-lactamase [Expression vector pSB3941]
 gi|309753681|gb|ADO85844.1| beta-lactamase precursor [cloning vector pEFFS-sigHA]
 gi|311120217|gb|ADP69177.1| beta-lactamase [pGREG expression vector pGREG505-C]
 gi|311120221|gb|ADP69180.1| beta-lactamase [pGREG expression vector pGREG505-G]
 gi|311120225|gb|ADP69183.1| beta-lactamase [pGREG expression vector pGREG505-T]
 gi|312191079|gb|ADQ43425.1| beta-lactamase [Cloning vector pBB-GFP]
 gi|312191082|gb|ADQ43427.1| beta-lactamase [Cloning vector pBB-CmR-ccdB]
 gi|312618308|gb|ADR00306.1| ampicillin resistance protein [Cloning vector pSIM1]
 gi|312618314|gb|ADR00311.1| ampicillin resistance protein [Cloning vector pSIM3]
 gi|313507426|gb|ADR65119.1| beta-lactamase [Reporter vector pFila]
 gi|313649572|gb|EFS13999.1| beta-lactamase family protein [Shigella flexneri 2a str. 2457T]
 gi|313798150|gb|ADR82071.1| beta-lactamase [RNA interference vector pBSK-Gus]
 gi|313798184|gb|ADR82072.1| beta-lactamase [RNA interference vector pBSK-Intron]
 gi|315075635|gb|ADT78589.1| AmpR [piggyBac cloning vector pHomeT-1-R]
 gi|315075641|gb|ADT78594.1| AmpR [piggyBac cloning vector pHomeD-B2-SCE-R]
 gi|315419253|gb|ADU15674.1| beta-lactamase [Yeast tagging vector pFA6a-URA3-kanMX6]
 gi|315435103|gb|ADU18047.1| ampicillin resistance protein [Expression vector pAttR-YFP-2xHA]
 gi|316997256|dbj|BAJ52723.1| ampicillin resistant protein [Yeast expression vector pSU9]
 gi|316997259|dbj|BAJ52725.1| ampicillin resistant protein [Yeast expression vector pSU14]
 gi|317447096|emb|CBX26421.1| beta-lactamase [Binary vector pAMARENA]
 gi|317487577|gb|ADV31343.1| beta-lactamase [Cloning vector pBSk-MP]
 gi|317487579|gb|ADV31344.1| beta-lactamase [Cloning vector pBSk-CP]
 gi|317487581|gb|ADV31345.1| beta-lactamase [Cloning vector pBSk-AC2]
 gi|317487583|gb|ADV31346.1| beta-lactamase [Cloning vector pBSk-BV4]
 gi|317487585|gb|ADV31347.1| beta-lactamase [Cloning vector pBSk-BC4]
 gi|318064866|gb|ADV36643.1| beta-lactamase [RNA interference vector pIBB103]
 gi|318104940|gb|ADV41494.1| beta-lactamase [Cloning vector pNO:luc]
 gi|319759852|gb|ADV71606.1| beta-lactamase [Cloning vector pBAC-FB]
 gi|319759855|gb|ADV71608.1| beta-lactamase [Cloning vector pBAC-FC]
 gi|320019966|gb|ADV94952.1| beta-lactamase TEM [Bacillus subtilis BSn5]
 gi|320090173|gb|ADW08738.1| beta-lactamase [Expression vector pKLCF-n]
 gi|320090176|gb|ADW08740.1| beta-lactamase [Expression vector pKLCF-c]
 gi|322392872|gb|ADW95857.1| beta-lactamase [Gene deletion vector pDGO-01]
 gi|323175358|gb|EFZ60959.1| beta-lactamase family protein [Escherichia coli LT-68]
 gi|323187768|gb|EFZ73067.1| beta-lactamase family protein [Escherichia coli RN587/1]
 gi|323482837|gb|ADX86836.1| beta-lactamase [Expression vector LMP-1]
 gi|325462541|gb|ADZ15151.1| ampiciliin resistance protein [Reporter vector pHonda1]
 gi|325559598|gb|ADZ30882.1| beta-lactamase [MoClo level 1 destination vector pL1F-1]
 gi|325559601|gb|ADZ30884.1| beta-lactamase [MoClo level 1 destination vector pL1R-1]
 gi|325559611|gb|ADZ30892.1| beta-lactamase [MoClo end-linker vector pELE-1]
 gi|325559613|gb|ADZ30893.1| beta-lactamase [MoClo end-linker vector pELB-1]
 gi|325559615|gb|ADZ30894.1| beta-lactamase [MoClo end-linker vector pELR-1]
 gi|325650940|emb|CCA29761.1| ampicillin resistance [Cloning vector pgalK-Kn]
 gi|325656977|gb|ADZ38981.1| beta-lactamase [Transformation and cloning vector pVCC]
 gi|325965629|gb|ADZ46397.1| beta-lactamase [Lux single copy cloning vector pMH31]
 gi|326322094|gb|ADZ54045.1| beta-lactamase [PCR amplification vector pCLF2]
 gi|326322097|gb|ADZ54047.1| beta-lactamase [PCR amplification vector pCLF1]
 gi|326370965|gb|ADZ56697.1| beta lactamase [Baculovirus expression/transfer vector pFB-ZB]
 gi|327176816|gb|AEA29836.1| beta-lactamase [Escherichia-Pseudomonas shuttle vector
           pCon2(3)-Zeo]
 gi|327176818|gb|AEA29837.1| beta-lactamase [Expression vector pCon4]
 gi|327176821|gb|AEA29839.1| beta-lactamase [Expression vector pCon5]
 gi|327176827|gb|AEA29844.1| beta-lactamase [Escherichia-Pseudomonas shuttle vector pCon2(3)]
 gi|327176832|gb|AEA29848.1| beta-lactamase [Escherichia-Pseudomonas shuttle vector
           pCon2(3)-Kan]
 gi|327176834|gb|AEA29849.1| beta-lactamase [Cloning vector pGBT-PX]
 gi|327176837|gb|AEA29851.1| beta-lactamase [Cloning vector pGBT-R14]
 gi|327176840|gb|AEA29853.1| beta-lactamase [Cloning vector pGBT-R15]
 gi|327176843|gb|AEA29855.1| beta-lactamase [Cloning vector pGBT-R16]
 gi|327176846|gb|AEA29857.1| beta-lactamase [Cloning vector pGBT-RP2]
 gi|327176850|gb|AEA29860.1| beta-lactamase [Cloning vector pT3TS-Cre]
 gi|327176853|gb|AEA29862.1| beta-lactamase [Cloning vector pT3TS-Tol2]
 gi|328795282|emb|CBZ41582.1| beta-lactamase [Cloning vector pDBR]
 gi|331687716|gb|AED88255.1| AmpR [Expression vector pMetYC_GW]
 gi|331687733|gb|AED88269.1| AmpR [Expression vector NX32_GW]
 gi|331687738|gb|AED88273.1| AmpR [Expression vector NX33_GW]
 gi|331687743|gb|AED88277.1| AmpR [Expression vector NWTX_GW]
 gi|331687748|gb|AED88281.1| AmpR [Expression vector XNWT_GW]
 gi|332143621|dbj|BAK19611.1| beta lactamase [Gateway vector pUGW55]
 gi|332144393|dbj|BAK19615.1| beta lactamase [Gateway vector pUGW60]
 gi|332144397|dbj|BAK19618.1| beta lactamase [Gateway vector pUGW61]
 gi|332144402|dbj|BAK19622.1| beta lactamase [Gateway vector pGWnY]
 gi|332144406|dbj|BAK19625.1| beta lactamase [Gateway vector pnYGW]
 gi|332144410|dbj|BAK19628.1| beta lactamase [Gateway vector pGWcY]
 gi|332144706|dbj|BAK19514.1| beta lactamase [Gateway vector pUGW0]
 gi|332144710|dbj|BAK19517.1| beta lactamase [Gateway vector pUGW1]
 gi|332144714|dbj|BAK19520.1| beta lactamase [Gateway vector pUGW2]
 gi|332144719|dbj|BAK19524.1| beta lactamase [Gateway vector pUGW3]
 gi|332144724|dbj|BAK19528.1| beta lactamase [Gateway vector pUGW4]
 gi|332144729|dbj|BAK19532.1| beta lactamase [Gateway vector pUGW5]
 gi|332144733|dbj|BAK19535.1| beta lactamase [Gateway vector pUGW6]
 gi|332144737|dbj|BAK19538.1| beta lactamase [Gateway vector pUGW8]
 gi|332144741|dbj|BAK19541.1| beta lactamase [Gateway vector pUGW9]
 gi|332144745|dbj|BAK19544.1| beta lactamase [Gateway vector pUGW11]
 gi|332144749|dbj|BAK19547.1| beta lactamase [Gateway vector pUGW12]
 gi|332144753|dbj|BAK19550.1| beta lactamase [Gateway vector pUGW14]
 gi|332144757|dbj|BAK19553.1| beta lactamase [Gateway vector pUGW15]
 gi|332144761|dbj|BAK19556.1| beta lactamase [Gateway vector pUGW17]
 gi|332144765|dbj|BAK19559.1| beta lactamase [Gateway vector pUGW18]
 gi|332144769|dbj|BAK19562.1| beta lactamase [Gateway vector pUGW20]
 gi|332144773|dbj|BAK19565.1| beta lactamase [Gateway vector pUGW21]
 gi|332144777|dbj|BAK19568.1| beta lactamase [Gateway vector pUGW23]
 gi|332144781|dbj|BAK19571.1| beta lactamase [Gateway vector pUGW24]
 gi|332144785|dbj|BAK19574.1| beta lactamase [Gateway vector pUGW26]
 gi|332144789|dbj|BAK19577.1| beta lactamase [Gateway vector pUGW27]
 gi|332144794|dbj|BAK19581.1| beta lactamase [Gateway vector pUGW33]
 gi|332144799|dbj|BAK19585.1| beta lactamase [Gateway vector pUGW35]
 gi|332144803|dbj|BAK19588.1| beta lactamase [Gateway vector pUGW41]
 gi|332144807|dbj|BAK19591.1| beta lactamase [Gateway vector pUGW42]
 gi|332144811|dbj|BAK19594.1| beta lactamase [Gateway vector pUGW44]
 gi|332144815|dbj|BAK19597.1| beta lactamase [Gateway vector pUGW45]
 gi|332144820|dbj|BAK19601.1| beta lactamase [Gateway vector pUGW51]
 gi|332144824|dbj|BAK19604.1| beta lactamase [Gateway vector pUGW52]
 gi|332144829|dbj|BAK19608.1| beta lactamase [Gateway vector pUGW54]
 gi|332144935|dbj|BAK19631.1| beta lactamase [Gateway vector pcYGW]
          Length = 286

 Score = 43.3 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|291163433|gb|ADD80743.1| extended-spectrum beta-lactamase PER-6 [Aeromonas
           allosaccharophila]
 gi|301030423|gb|ADK47973.1| extended-spectrum beta-lactamase PER-6 [Aeromonas media]
 gi|316994934|gb|ADU79018.1| extended-spectrum beta-lactamase PER-6 [Aeromonas veronii]
 gi|316994937|gb|ADU79020.1| extended-spectrum beta-lactamase PER-6 [Aeromonas
           allosaccharophila]
          Length = 308

 Score = 43.3 bits (101), Expect = 0.049,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 12/138 (8%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKT----YFTT 128
           E     S+ KM    ++   +   KL LN  + V++ A  QN     +K+        T 
Sbjct: 65  EKFPMQSVFKMHLAMLVLHQVDQGKLDLNKTVAVNRAAVLQNTWSPMMKDHQGDEFTVTV 124

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK---NASGLHDK 185
           +Q +   ++ S N       E + G        +    + +G++ T            D+
Sbjct: 125 QQLLQYSVSHSDNVACDLLFELVGGP-----AALHAYIQSLGIKETEVVANEAQMHADDQ 179

Query: 186 NQITTARDQAILGILLRK 203
            Q            LLRK
Sbjct: 180 VQYKNWTSMKAAAQLLRK 197


>gi|146260138|gb|ABQ14407.1| beta-lactamase [uncultured soil bacterium]
          Length = 269

 Score = 43.3 bits (101), Expect = 0.049,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++ G  + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILGSFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHCSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|307293967|ref|ZP_07573811.1| Beta-lactamase [Sphingobium chlorophenolicum L-1]
 gi|306880118|gb|EFN11335.1| Beta-lactamase [Sphingobium chlorophenolicum L-1]
          Length = 382

 Score = 43.3 bits (101), Expect = 0.049,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT---QNPSKLYLKEKTYFTTEQGILAL 135
           S++K+       + +   K+ L+    ++K   T   Q  + L        T    +   
Sbjct: 119 SVSKLWVSMTFLDAVDRGKIRLSDSTTITKKDLTLFHQPTAALVGNSGWTTTYSDLMRRA 178

Query: 136 ITRSANDVSTAFGEFISGSEK 156
           +T+S N  +      + G E 
Sbjct: 179 MTQSDNTANDTLLRAVGGPEA 199


>gi|256751507|ref|ZP_05492384.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256749591|gb|EEU62618.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 422

 Score = 43.3 bits (101), Expect = 0.049,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 52/169 (30%), Gaps = 17/169 (10%)

Query: 59  IDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID+N  Q       +    AS  K+ +  Y+ +  +   K+  N ++  ++         
Sbjct: 198 IDLNTGQTFEINGYDSFIAASTYKVPLNFYL-YTLITDGKIDPNMKVQYTQADYEGGAGS 256

Query: 118 LYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
           +      +Y+T  +     I  S N  S      +               +K+G     Y
Sbjct: 257 IQADPVGSYYTIRELSRRSIEESDNIASNMIMRIVGR------DNYIKFMEKLGA----Y 306

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
                    N +T+ RD ++    L      +        +  +N I  
Sbjct: 307 VIPY----SNNVTSPRDMSMYMKNLLDYVNAHPDTAGELMYYLKNTIYN 351


>gi|37575115|gb|AAQ93490.1| class A beta-lactamase TEM-123 [Proteus mirabilis]
          Length = 285

 Score = 43.3 bits (101), Expect = 0.049,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 60/159 (37%), Gaps = 17/159 (10%)

Query: 26  RNIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPR 75
           ++ ++     F +  +   A          +E     +   I +D+N  ++    + E R
Sbjct: 4   KHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEER 63

Query: 76  YPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGI 132
           +P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +  
Sbjct: 64  FPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELC 121

Query: 133 LALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            A IT S N  +      I G ++   F   M +   ++
Sbjct: 122 SAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|315940019|gb|ADU56220.1| TEM-2 extended-spectrum beta-lactamase [Escherichia coli]
          Length = 219

 Score = 43.3 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVAVIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  P-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMISTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|123217689|gb|ABM73648.1| KLUC-2 [Enterobacter cloacae]
          Length = 291

 Score = 43.3 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 57/160 (35%), Gaps = 17/160 (10%)

Query: 26  RNIQLMGKILF--LSIIMISMASELHAKPKYSSI-----------VID-VNKNQMTGFKQ 71
           R   L+   +F  L+  +   A  L  + K +++           +ID  + +Q+   + 
Sbjct: 7   RQFALLAATVFPLLAGSVSLQAQTLSVEQKLAALEQRSGGRLGVALIDTADGSQILY-RG 65

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           DE     S +K+M    + +  +S+   LN +I + K   T              +  + 
Sbjct: 66  DERFAMCSTSKVMAAAAVLKQSESQHDLLNQRIEIKKGDLTNYNPIAEKHVGRSMSLSEL 125

Query: 132 ILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             A +  S N         + G      FA  + ++  ++
Sbjct: 126 SAAALQYSDNVAMNKLIAQLGGPQGVTAFARKIGDETFRL 165


>gi|15893483|ref|NP_346832.1| Beta-lactamase [Clostridium acetobutylicum ATCC 824]
 gi|15023021|gb|AAK78172.1|AE007532_5 Beta-lactamase [Clostridium acetobutylicum ATCC 824]
 gi|325507600|gb|ADZ19236.1| Beta-lactamase [Clostridium acetobutylicum EA 2018]
          Length = 260

 Score = 43.3 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 12/136 (8%)

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYF 126
              K++E    AS  K++ +      + S    L  +I + K++   N S +       +
Sbjct: 36  IYIKENEVFPSASTIKVLIMAEALNEVLSGNHALEEKIEI-KSSDKVNYSIVTCLTNKIY 94

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA-----SG 181
                +  +I  S N  S    + ++         ++N  KKIG++ T+ +       + 
Sbjct: 95  PLIDLLTLMIISSDNTASNILIDLLT------MDSINNYGKKIGLKTTLLRRKMMDSNAA 148

Query: 182 LHDKNQITTARDQAIL 197
              +  ITTA D   L
Sbjct: 149 KEGRENITTAFDMLTL 164


>gi|317123754|ref|YP_004097866.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Intrasporangium
           calvum DSM 43043]
 gi|315587842|gb|ADU47139.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Intrasporangium
           calvum DSM 43043]
          Length = 506

 Score = 43.3 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 9/113 (7%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
            ++    L A    S +V D     +   +   + R PAS TK++T   + + +      
Sbjct: 84  ALAGVVTLPALADASLVVRDGQSGGILYDRGGSQRRIPASTTKLLTAAAVGQ-VFGGDET 142

Query: 100 LNTQIPVSKTA-----ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           L T++    +A          S L   E           A +   A+ V+ A 
Sbjct: 143 LRTEVHEGASADQVVLVAGGDSLLAPGEGDPGAV--AGRAGLADLADQVALAL 193


>gi|222153369|ref|YP_002562546.1| lipoprotein [Streptococcus uberis 0140J]
 gi|222114182|emb|CAR42710.1| putative lipoprotein [Streptococcus uberis 0140J]
          Length = 350

 Score = 43.3 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 14/105 (13%), Positives = 36/105 (34%), Gaps = 4/105 (3%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN---PS 116
           D+   +       +P    S  K+    ++ + +   K  ++ +  +++T         +
Sbjct: 115 DIETGRTFSMNDTQPMTAGSTYKLPLNMLVVDAVAKGKYTMDQRFDITQTTYEYEKEHEA 174

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
            +        +  +     +  S N  + A  E + G EK +  L
Sbjct: 175 YVGQFAGA-MSIPEMQEYSLVYSENTPAYALAERLGGMEKAYQKL 218


>gi|120403343|ref|YP_953172.1| beta-lactamase [Mycobacterium vanbaalenii PYR-1]
 gi|119956161|gb|ABM13166.1| Beta-lactamase [Mycobacterium vanbaalenii PYR-1]
          Length = 297

 Score = 43.3 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 11/121 (9%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYI---IFEYLQSKKLHLNTQIPVSKTAATQN 114
            +D++  +   F  DEP    S  K    Y    + +  Q+ +L LN  IP+       +
Sbjct: 57  ALDLDTQRGIEFGADEPFAMCSTFK---AYAAAAVLQRTQTGELTLNDAIPIEPGDIRPH 113

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
                 +  T  +  +   A + +S N  +      + G +      ++  A+ IG   T
Sbjct: 114 SPVTEPRVGTSMSLAELCQAALQQSDNAAANGLLRVLGGPQA-----ITAFARSIGDHRT 168

Query: 175 I 175
            
Sbjct: 169 R 169


>gi|2995959|gb|AAD13350.1| beta-lactamase [Expression vector pPK113]
 gi|4808836|gb|AAD29959.1| beta-lactamase [Expression vector pPK115]
 gi|5639950|gb|AAD45907.1| beta-lactamase [Cloning vector pPK124]
 gi|22774036|gb|AAN07186.1| beta-lactamase [Cloning vector pIA423]
 gi|27573252|gb|AAO20026.1| beta lactamase [Expression vector pETAT-1]
 gi|27573255|gb|AAO20028.1| beta lactamase [Expression vector pETAT-2]
 gi|27573258|gb|AAO20030.1| beta lactamase [Expression vector pNB-3]
 gi|134105580|gb|ABO60931.1| beta-lactamase [Expression vector pET21a-LIC]
 gi|145307007|gb|ABP57189.1| beta-lactamase [Expression vector pET32a-LIC]
 gi|164470782|gb|ABY58157.1| beta lactamase [Expression vector pTEV4]
 gi|164470785|gb|ABY58159.1| beta lactamase [Expression vector pTEV3]
 gi|164470788|gb|ABY58161.1| beta lactamase [Expression vector pTEV5]
 gi|164470791|gb|ABY58163.1| beta lactamase [Expression vector pKLD66]
 gi|187969496|gb|ACD44845.1| ampicillin resistance protein [Expression vector pGGWA]
 gi|187969501|gb|ACD44849.1| ampicillin resistance protein [Expression vector pHGGWA]
 gi|187969506|gb|ACD44853.1| ampicillin resistance protein [Expression vector pHGWA]
 gi|187969511|gb|ACD44857.1| ampicillin resistance protein [Expression vector pHMGWA]
 gi|187969516|gb|ACD44861.1| ampicillin resistance protein [Expression vector pHNGWA]
 gi|187969521|gb|ACD44865.1| ampicillin resistance protein [Expression vector pHXGWA]
 gi|187969526|gb|ACD44869.1| ampicillin resistance protein [Expression vector pMGWA]
 gi|187969531|gb|ACD44873.1| ampicillin resistance protein [Expression vector pNGWA]
 gi|187969536|gb|ACD44877.1| ampicillin resistance protein [Expression vector pXGWA]
 gi|187969541|gb|ACD44881.1| ampicillin resistance protein [Expression vector p0GWA]
 gi|219646791|gb|ACL30944.1| beta-lactamase [Cloning vector pJM2]
 gi|282161296|gb|ADA79630.1| ampicillin resistance protein [Escherichia coli]
 gi|310686582|gb|ADP02957.1| Bla [Cloning vector pETL7]
 gi|310686592|gb|ADP02965.1| Bla [Cloning vector pLR4]
          Length = 286

 Score = 43.3 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|269959868|ref|ZP_06174245.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835167|gb|EEZ89249.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 283

 Score = 43.3 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 15/154 (9%)

Query: 31  MGKILFLSIIMISMASELHAK--PKYSSI-----------VIDVNKNQMTGFKQDEPRYP 77
           M K+L L  +++  ++   AK     +SI           V D   ++   ++ DE    
Sbjct: 1   MKKLLLLFGLVVCSSATYAAKLNEDLASIEEHISGRLGVSVWDTQTDEKWDYRGDERFPM 60

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
            S  K +    + + + S+KL  N    V +         +          E    A + 
Sbjct: 61  MSTFKTLACATMLKDMDSEKLDKNATAKVEERNMVVWSPVMDRMAGQTTRIEHACEAAML 120

Query: 138 RSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
            S N  +      I G     +F   + +KA ++
Sbjct: 121 MSDNTAANIVLRSIGGPHGVTRFLRSIGDKATRL 154


>gi|88855862|ref|ZP_01130524.1| hypothetical protein A20C1_10941 [marine actinobacterium PHSC20C1]
 gi|88814729|gb|EAR24589.1| hypothetical protein A20C1_10941 [marine actinobacterium PHSC20C1]
          Length = 379

 Score = 43.3 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 33/82 (40%), Gaps = 7/82 (8%)

Query: 58  VIDVN-KNQM----TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           ++D++  +Q+     G  +       SLTK MT  +I + ++  ++ ++  +P+S     
Sbjct: 82  IVDLDATHQVQFGGLGADESTRFEVGSLTKAMTGLVISDAVERGEIRMD--VPISTYLPE 139

Query: 113 QNPSKLYLKEKTYFTTEQGILA 134
              ++          T     A
Sbjct: 140 LAGARAGTVTLQELVTHTAGYA 161


>gi|195954348|gb|ACG58881.1| TEM-116 extended-spectrum beta-lactamase [Klebsiella pneumoniae]
          Length = 272

 Score = 43.3 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|47846294|emb|CAG30723.1| hypothetical protein [Hordeum vulgare subsp. vulgare]
 gi|254973018|gb|ACT98420.1| BlaD290 [Expression vector RHP-AmpS]
          Length = 285

 Score = 43.3 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|83774923|dbj|BAE65046.1| unnamed protein product [Aspergillus oryzae]
          Length = 411

 Score = 43.3 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 17/64 (26%)

Query: 57  IVIDVNKNQMTGFKQ------DEPRYPA----------SLTKMMTLYIIFEYLQSKKLHL 100
           I ID +  ++   +       D+   PA          S+TK++T   + + ++   + L
Sbjct: 25  IAID-SSGKIIYHRAAGKASLDDENAPALQTDSLYWIASMTKLVTAIAVMQLVERGIVSL 83

Query: 101 NTQI 104
           +  +
Sbjct: 84  DEDV 87


>gi|51892118|ref|YP_074809.1| putative beta-lactamase [Symbiobacterium thermophilum IAM 14863]
 gi|51855807|dbj|BAD39965.1| putative beta-lactamase [Symbiobacterium thermophilum IAM 14863]
          Length = 529

 Score = 43.3 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 15/152 (9%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           Y   V+D++         D+    AS  K+     +F  ++  +  L   +  +     +
Sbjct: 169 YGVAVVDLSTGATVSVGGDQVFVAASTFKVPLAMYVFSLVERGEADLAEPLYYAPEDW-E 227

Query: 114 NPSKL--YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             S +         +T  + +   +T S N  +        G +  FA       +++G 
Sbjct: 228 GGSGILHGSIAGDCYTVAELVHLSLTVSDNIATNML-LRRFGEQNVFA-----YMRELGG 281

Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRK 203
             T       L    + TT RD A+   +  +
Sbjct: 282 TVTN------LSTGRRATTPRDMALYMEVAYR 307


>gi|317157030|ref|XP_001826179.2| esterase [Aspergillus oryzae RIB40]
          Length = 417

 Score = 43.3 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 17/64 (26%)

Query: 57  IVIDVNKNQMTGFKQ------DEPRYPA----------SLTKMMTLYIIFEYLQSKKLHL 100
           I ID +  ++   +       D+   PA          S+TK++T   + + ++   + L
Sbjct: 25  IAID-SSGKIIYHRAAGKASLDDENAPALQTDSLYWIASMTKLVTAIAVMQLVERGIVSL 83

Query: 101 NTQI 104
           +  +
Sbjct: 84  DEDV 87


>gi|257067598|ref|YP_003153853.1| beta-lactamase class A [Brachybacterium faecium DSM 4810]
 gi|256558416|gb|ACU84263.1| beta-lactamase class A [Brachybacterium faecium DSM 4810]
          Length = 273

 Score = 43.3 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 67/182 (36%), Gaps = 26/182 (14%)

Query: 44  MASELHAKPKYSSI---VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
           M     A P  +++   ++DV  + ++      P Y AS  K+  L       +   L L
Sbjct: 1   MTLPTAAAPDEAAVSHCLLDVEGHVLSAAGAARPYYAASTIKLHVLVAALRAAEQGMLDL 60

Query: 101 NTQIPVSKTAATQNPSKLYL----------KEKTYFTTEQGILALITRSANDVS-TAFG- 148
           + Q+P ++T    +     L          ++       + +  +I RS+N+ +      
Sbjct: 61  SAQVPATRTFRGADGRPFTLEGDHLDPTHPEDGEPVQVRELLTRMIDRSSNEATNHVLAL 120

Query: 149 ---EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLRKN 204
              E ++ +    A+  +   + IG       +A+ L +     T+A D A   +   + 
Sbjct: 121 LGLEAVAATIADLALGATRVERLIG-------DAAALAEGATNETSAADLATTMLAAVRP 173

Query: 205 FP 206
            P
Sbjct: 174 VP 175


>gi|302553167|ref|ZP_07305509.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Streptomyces viridochromogenes DSM 40736]
 gi|302470785|gb|EFL33878.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Streptomyces viridochromogenes DSM 40736]
          Length = 458

 Score = 43.3 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 70/189 (37%), Gaps = 18/189 (9%)

Query: 109 TAATQNPSKLYLKEKT-----YFTTEQGILALITRSANDVSTAFGEFIS---GSEKKFA- 159
            A    PSK   + KT            +  ++T S ND++ A     +   G    FA 
Sbjct: 261 KATAPGPSKATTRAKTLAAVSSPPLSALVERMLTDSDNDIAEALARQTALASGDRADFAG 320

Query: 160 --ILMSNKAKKIG--MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
               +S + +K+G  +  + +K+ SGL   +++T     A+L        P+     ++ 
Sbjct: 321 AGRAISARLRKLGLPLDGSSFKDGSGLDRADRLTPDLLTALLTKAADPAHPELRP--ALT 378

Query: 216 KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI--VAVVMGMPTS 273
                    T  ++  +        KTG        +  ++  +D  +   A +    T+
Sbjct: 379 GLPVAGFTGTLTSRYTDGAAGAVRAKTGTLTGVN-TLAGTVVDQDGRLLAFAFMANDTTN 437

Query: 274 QERDQKALE 282
            E  QKAL+
Sbjct: 438 PEEAQKALD 446



 Score = 42.9 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 32  GKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIF 90
           GK L  ++  +     L  +P  S  V+DV   +      QD    PAS TK+ T     
Sbjct: 73  GKALAQALTPLLKDPALGTRPAAS--VVDVTTGRSLYGTDQDAALTPASTTKIATAVAAL 130

Query: 91  EYL 93
             +
Sbjct: 131 SAM 133


>gi|163854997|ref|YP_001629295.1| peptidoglycan glycosyltransferase [Bordetella petrii DSM 12804]
 gi|163258725|emb|CAP41024.1| peptidoglycan glycosyltransferase [Bordetella petrii]
          Length = 576

 Score = 43.3 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 32/151 (21%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTG--------------FKQDEPR--------YPASLTK 82
           A + H     S+IV+DV+  ++                F     R         P S+ K
Sbjct: 244 AMQKHQAGAASAIVMDVHTGEILALASLPTFDPNRRETFHAPNLRNRAITDTFEPGSIMK 303

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-YLKEKTYFTTEQGILALITRSAN 141
             T  +  +     +++ +TQ      A     S +  +              ++ RS+N
Sbjct: 304 PFTAALALDL---GRINASTQFETGNGALRYQGSTIHDVSRNGTLNVA----GVLRRSSN 356

Query: 142 DVSTAFGEFISGSE--KKFAILMSNKAKKIG 170
              T   E +   E  ++F  L   +A ++G
Sbjct: 357 IGMTLISEKLESREMWERFTELGFGRAPQLG 387


>gi|308187711|ref|YP_003931842.1| Penicillin-binding protein ampH [Pantoea vagans C9-1]
 gi|308058221|gb|ADO10393.1| Penicillin-binding protein ampH [Pantoea vagans C9-1]
          Length = 405

 Score = 43.3 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE 129
           ++D     ASL+K+MT  ++ +  +  ++ L+   P+SK A     +++           
Sbjct: 94  QKDSLIRIASLSKLMTSEVMVKMAERGQIRLDD--PLSKYA--PPGARVPTYNGQPIRLI 149

Query: 130 QG 131
             
Sbjct: 150 NL 151


>gi|126149279|dbj|BAF47412.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 214

 Score = 43.3 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 31/96 (32%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ++D    +  G +QDE     S  K +    + +  +     L+ ++PV      ++   
Sbjct: 35  LLDTGSGRRLGHRQDERFPLCSTFKSVLAATVLKQAERDPALLDQRLPVRAQDILEHAPV 94

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                    T      A +  S N  +      I G
Sbjct: 95  TRRHVGKDLTVRDLCRATLITSDNTAANLLFAAIGG 130


>gi|126149277|dbj|BAF47411.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 207

 Score = 43.3 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 31/96 (32%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ++D    +  G +QDE     S  K +    + +  +     L+ ++PV      ++   
Sbjct: 30  LLDTGSGRRLGHRQDERFPLCSTFKSVLAATVLKQAERDPALLDQRLPVRAQDILEHAPV 89

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                    T      A +  S N  +      I G
Sbjct: 90  TRRHVGKDLTVRDLCRATLITSDNTAANLLFAAIGG 125


>gi|74474882|dbj|BAE44429.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 219

 Score = 43.3 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 31/96 (32%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ++D    +  G +QDE     S  K +    + +  +     L+ ++PV      ++   
Sbjct: 51  LLDTGSGRRLGHRQDERFPLCSTFKSVLAATVLKQAERDPALLDQRLPVRAQDILEHAPV 110

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                    T      A +  S N  +      I G
Sbjct: 111 TRRHVGKDLTVRDLCRATLITSDNTAANLLFAAIGG 146


>gi|323186289|gb|EFZ71640.1| beta-lactamase family protein [Escherichia coli 1357]
          Length = 212

 Score = 43.3 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|315940017|gb|ADU56219.1| TEM-2 extended-spectrum beta-lactamase [Escherichia coli]
 gi|315940021|gb|ADU56221.1| TEM-2 extended-spectrum beta-lactamase [Escherichia coli]
          Length = 219

 Score = 43.3 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  P-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMISTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|146260122|gb|ABQ14402.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 43.3 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 17/128 (13%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMM-TLYI-----IFEYLQSKKLHLNTQIP 105
            +   I +D+N  ++    + E R+P     MM TL +     +   + + +  L  +I 
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFP-----MMGTLKVLLCGAVLSRIDAGQEQLGRRIH 86

Query: 106 VSKTAATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAIL 161
            S+    +    ++ +L +    T  +   A IT S N  +      I G ++   F   
Sbjct: 87  YSQNDLVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHN 144

Query: 162 MSNKAKKI 169
           M +   ++
Sbjct: 145 MGDHVTRL 152


>gi|21464485|gb|AAM52207.1| class A beta-lactamase TEM-106 [Escherichia coli]
          Length = 286

 Score = 43.3 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 60/163 (36%), Gaps = 27/163 (16%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PASLTKMMT---LYI---IFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTT 128
           P     MM+   + +   +   + + +  L  +I  S+      +P ++ +L +    T 
Sbjct: 65  P-----MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTV 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            +   A IT S N  +      I G ++   F   M +   ++
Sbjct: 118 RELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|11364578|gb|AAC32889.2| beta-lactamase TEM-43 [Klebsiella pneumoniae]
          Length = 286

 Score = 43.3 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 60/163 (36%), Gaps = 27/163 (16%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PASLTKMMT---LYI---IFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTT 128
           P     MM+   + +   +   + + +  L  +I  S+      +P ++ +L +    T 
Sbjct: 65  P-----MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTV 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            +   A IT S N  +      I G ++   F   M +   ++
Sbjct: 118 RELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|24158843|pdb|1LI0|A Chain A, Crystal Structure Of Tem-32 Beta-Lactamase At 1.6 Angstrom
          Length = 263

 Score = 43.3 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 17  ARVGYIELDLNSGKILESFRPEERFPMISTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 76

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 77  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 134

Query: 167 KKI 169
            ++
Sbjct: 135 TRL 137


>gi|10641070|dbj|BAB16308.1| TEM-derived extended-spectrum beta-lactamase [Escherichia coli]
          Length = 286

 Score = 43.3 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 59/166 (35%), Gaps = 27/166 (16%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PASLTKMMT---LYI---IFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTT 128
           P     MM+   + +   +   + + +  L  +I  S+    +    ++ +L +    T 
Sbjct: 65  P-----MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTV 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQ 172
            +   A IT S N  +      I G ++   F   M +   ++   
Sbjct: 118 RELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDCW 163


>gi|225196235|gb|ACN82383.1| TEM-116 beta-lactamase [Aeromonas hydrophila]
 gi|225196237|gb|ACN82384.1| TEM-116 beta-lactamase [Aeromonas hydrophila]
 gi|225196239|gb|ACN82385.1| TEM-116 beta-lactamase [Aeromonas hydrophila]
 gi|225196241|gb|ACN82386.1| TEM-116 beta-lactamase [Aeromonas hydrophila]
 gi|225196243|gb|ACN82387.1| TEM-116 beta-lactamase [Aeromonas hydrophila]
 gi|225196245|gb|ACN82388.1| TEM-116 beta-lactamase [Aeromonas jandaei]
 gi|225196247|gb|ACN82389.1| TEM-116 beta-lactamase [Aeromonas jandaei]
 gi|225196249|gb|ACN82390.1| TEM-116 beta-lactamase [Aeromonas jandaei]
 gi|225196251|gb|ACN82391.1| TEM-116 beta-lactamase [Aeromonas jandaei]
 gi|225196253|gb|ACN82392.1| TEM-116 beta-lactamase [Aeromonas jandaei]
          Length = 284

 Score = 43.3 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|145306442|gb|ABP57022.1| beta lactamase [Cloning vector pTrueBlue]
          Length = 283

 Score = 43.3 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|300934247|ref|ZP_07149503.1| hypothetical protein CresD4_09264 [Corynebacterium resistens DSM
           45100]
          Length = 276

 Score = 43.3 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 64  NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-LYLKE 122
               G KQDE    ASL K+  L++  E +Q   L    ++ V+ +  T          +
Sbjct: 30  GVTIGRKQDEKIPVASLYKIRLLHLTLEAIQRGDLDPRLRVDVAPSKGTYEGYGFAAFDD 89

Query: 123 KTYFTTEQGILALITRSANDVSTAF 147
               +    +  + + S N  +   
Sbjct: 90  AVNVSLRDLMKQVASVSDNVAAHEI 114


>gi|325918694|ref|ZP_08180792.1| beta-lactamase class A [Xanthomonas vesicatoria ATCC 35937]
 gi|325535086|gb|EGD06984.1| beta-lactamase class A [Xanthomonas vesicatoria ATCC 35937]
          Length = 297

 Score = 43.3 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 11/90 (12%), Positives = 28/90 (31%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ++D       G +++E     S  K +    + + +   KL L   + +  +   ++   
Sbjct: 55  LLDSATGWRLGQRENERFPMCSTFKFVLAAAVLQQVDRGKLSLAQPVKIRASDMLEHAPV 114

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAF 147
                    +      A +  S N  +   
Sbjct: 115 TKGHVGGALSVGDLCRATMIYSDNPAANLL 144


>gi|237786217|ref|YP_002906922.1| putative penicillin-binding protein 4 [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237759129|gb|ACR18379.1| putative penicillin-binding protein 4 [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 557

 Score = 43.3 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 4/37 (10%)

Query: 58  VIDVNKNQMTGFKQD-EPRYPASLTKMMT---LYIIF 90
           V D +  +    K       PAS TKMMT     +  
Sbjct: 140 VTDASTGKTLWEKNSSTAMVPASSTKMMTTAAALLTL 176


>gi|21464496|gb|AAM52215.1| class A beta-lactamase TEM-107 [Klebsiella pneumoniae]
          Length = 286

 Score = 43.3 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 60/163 (36%), Gaps = 27/163 (16%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PASLTKMMT---LYI---IFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTT 128
           P     MM+   + +   +   + + +  L  +I  S+      +P ++ +L +    T 
Sbjct: 65  P-----MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTV 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            +   A IT S N  +      I G ++   F   M +   ++
Sbjct: 118 RELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|238493221|ref|XP_002377847.1| esterase, putative [Aspergillus flavus NRRL3357]
 gi|220696341|gb|EED52683.1| esterase, putative [Aspergillus flavus NRRL3357]
          Length = 417

 Score = 43.3 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 17/64 (26%)

Query: 57  IVIDVNKNQMTGFKQ------DEPRYPA----------SLTKMMTLYIIFEYLQSKKLHL 100
           I ID +  ++   +       D+   PA          S+TK++T   + + ++   + L
Sbjct: 25  IAID-SSGKIIYHRAAGKASLDDENAPALQTDSLYWIASMTKLVTAIAVMQLVERGIVSL 83

Query: 101 NTQI 104
           +  +
Sbjct: 84  DEDV 87


>gi|146260184|gb|ABQ14422.1| beta-lactamase [uncultured soil bacterium]
 gi|146260247|gb|ABQ14446.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.9 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--VTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|85375695|ref|YP_459757.1| Beta-lactamase class A [Erythrobacter litoralis HTCC2594]
 gi|84788778|gb|ABC64960.1| Beta-lactamase class A [Erythrobacter litoralis HTCC2594]
          Length = 338

 Score = 42.9 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 45/116 (38%), Gaps = 17/116 (14%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
            +D++  +  G   D+P   AS +K+    +    + + K  L+++             +
Sbjct: 76  ALDLSTGREIGVLADQPFPMASTSKVAIAAVYLAGVDAGKWSLSSEW------------R 123

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           L      Y   +  +  ++++S ND + A    + G E      ++   ++ G+  
Sbjct: 124 LPRPGGKYVPAKTLLDLMVSKSCNDCTDALLSAVGGPEA-----VNRWMRQAGISG 174


>gi|119384064|ref|YP_915120.1| peptidase S13, D-Ala-D-Ala carboxypeptidase C [Paracoccus
          denitrificans PD1222]
 gi|119384318|ref|YP_915374.1| peptidase S13, D-Ala-D-Ala carboxypeptidase C [Paracoccus
          denitrificans PD1222]
 gi|119373831|gb|ABL69424.1| peptidase S13, D-Ala-D-Ala carboxypeptidase C [Paracoccus
          denitrificans PD1222]
 gi|119374085|gb|ABL69678.1| peptidase S13, D-Ala-D-Ala carboxypeptidase C [Paracoccus
          denitrificans PD1222]
          Length = 484

 Score = 42.9 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 58 VIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYL 93
          VID    Q+   +Q EP   PAS  K +T     + L
Sbjct: 55 VIDPASGQVLAERQPEPSMAPASTLKAVTALYALDRL 91


>gi|239982849|ref|ZP_04705373.1| secreted beta-lactamase [Streptomyces albus J1074]
 gi|291454692|ref|ZP_06594082.1| secreted beta-lactamase [Streptomyces albus J1074]
 gi|291357641|gb|EFE84543.1| secreted beta-lactamase [Streptomyces albus J1074]
          Length = 323

 Score = 42.9 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 37/118 (31%), Gaps = 13/118 (11%)

Query: 64  NQMTGFKQDEPRYPASLTKMMTLYIIFE---YLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
            ++     DEP   AS+ K+    ++ E    + + +L    ++ V++            
Sbjct: 57  GEI-ALGADEPVVIASIFKV---LLVLEFARQVAAGQLDPRERVRVTRGDRLGGWGTAGC 112

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            +    +        +T S N  +      I          +   A ++G+  T    
Sbjct: 113 ADDIELSLRDLAFFAMTVSDNSAADLLLARIG------LDTVRLLAGELGLDRTRIVG 164


>gi|46244162|gb|AAP93845.1| beta-lactamase [Escherichia coli]
          Length = 242

 Score = 42.9 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 24  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 83

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 84  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 141

Query: 167 KKI 169
            ++
Sbjct: 142 TRL 144


>gi|222143569|dbj|BAH18767.1| class A beta-lactamase [Escherichia hermannii]
          Length = 286

 Score = 42.9 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 20/158 (12%)

Query: 31  MGKILFLSIIMISMASELHAKPK------------YSSI---VIDVNKNQMTGFKQDEPR 75
           +  I FL++I +   ++    P             ++ I   V++     + G++QDE  
Sbjct: 3   LFVIAFLTLIALLAPAQASVTPDMTDFLRQQEQRLHARIGMAVVNAQGETVFGYRQDERF 62

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA--TQNPSKLYLKEKTYFTTEQGIL 133
              S  K +    + E LQ     L+ Q+ +   A       +K YL      +      
Sbjct: 63  PLTSTFKTLACAALLERLQKNGGSLDEQVTIPPDALLDYAPVTKNYLAP-ATISLRMLCA 121

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A ++ S N        ++ G +   +F   + +   ++
Sbjct: 122 AAVSYSDNTAGNRILTYLGGPDAVTQFMRGIGDHVTRL 159


>gi|4559300|gb|AAD22974.1| extended-spectrum beta-lactamase variant [Salmonella enterica
           subsp. enterica serovar Saintpaul]
          Length = 279

 Score = 42.9 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 60/163 (36%), Gaps = 27/163 (16%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PASLTKMMT---LYI---IFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTT 128
           P     MM+   + +   +   + + +  L  +I  S+      +P ++ +L +    T 
Sbjct: 65  P-----MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTV 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            +   A IT S N  +      I G ++   F   M +   ++
Sbjct: 118 RELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|38234569|ref|NP_940336.1| putative D-Ala D-Ala carboxypeptidase [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38200832|emb|CAE50536.1| Putative D-Ala D-Ala carboxypeptidase [Corynebacterium diphtheriae]
          Length = 426

 Score = 42.9 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 58  VIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
           ++D    ++   K  D+P  PAS TKM+T 
Sbjct: 92  IVDATTGEVILEKDADKPLTPASATKMLTA 121


>gi|2467190|emb|CAA73933.1| extended-spectrum TEM-type beta-lactamase variant, TEM-52
           [Klebsiella pneumoniae]
 gi|2612978|gb|AAB84239.1| extended spectrum beta-lactamase [Klebsiella pneumoniae]
 gi|58615622|gb|AAW80310.1| extended-spectrum beta-lactamase TEM-52 [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|119632825|gb|ABL84416.1| TEM-52 [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 286

 Score = 42.9 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 60/163 (36%), Gaps = 27/163 (16%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PASLTKMMT---LYI---IFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTT 128
           P     MM+   + +   +   + + +  L  +I  S+      +P ++ +L +    T 
Sbjct: 65  P-----MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTV 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            +   A IT S N  +      I G ++   F   M +   ++
Sbjct: 118 RELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|114386384|gb|ABI74448.1| beta lactamase TEM-151 [Escherichia coli]
          Length = 286

 Score = 42.9 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 63/180 (35%), Gaps = 17/180 (9%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  P-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMVSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           A IT S N  +      I G ++   F   M +   ++         A    +++    A
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAIPNDERDTTMPA 182


>gi|304398334|ref|ZP_07380208.1| beta-lactamase [Pantoea sp. aB]
 gi|304354200|gb|EFM18573.1| beta-lactamase [Pantoea sp. aB]
          Length = 387

 Score = 42.9 bits (100), Expect = 0.062,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE 129
           ++D     ASL+K+MT  ++ +  +  ++ L+   P+SK A     +++           
Sbjct: 76  QKDSLIRIASLSKLMTSEVMVKMAERGQIRLDD--PLSKYA--PPGARVPTYNGQPIRLI 131

Query: 130 QG 131
             
Sbjct: 132 NL 133


>gi|86450762|gb|ABC96711.1| TEM-149 beta-lactamase [Enterobacter aerogenes]
          Length = 286

 Score = 42.9 bits (100), Expect = 0.062,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|46244152|gb|AAP93840.1| beta-lactamase [Klebsiella pneumoniae]
          Length = 241

 Score = 42.9 bits (100), Expect = 0.062,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 23  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 82

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 83  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 140

Query: 167 KKI 169
            ++
Sbjct: 141 TRL 143


>gi|74474884|dbj|BAE44430.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 289

 Score = 42.9 bits (100), Expect = 0.062,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 39/119 (32%), Gaps = 5/119 (4%)

Query: 40  IMISMASELHAKPKYSS-----IVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQ 94
             ++ A++  A  K  +      ++D    +  G +QDE     S  K +    +    +
Sbjct: 28  AALTAATDFAALEKACAGRLGVTLLDTASGRRIGHRQDERFPMCSTFKSVLAATVLSQAE 87

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            +   L+T++PV       +            T      A I  S N  +      + G
Sbjct: 88  RRPALLDTRVPVRDADLLSHAPVTRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGG 146


>gi|330933568|ref|XP_003304219.1| hypothetical protein PTT_16715 [Pyrenophora teres f. teres 0-1]
 gi|311319302|gb|EFQ87676.1| hypothetical protein PTT_16715 [Pyrenophora teres f. teres 0-1]
          Length = 402

 Score = 42.9 bits (100), Expect = 0.062,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 17/33 (51%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +   + AS TK+MT     + ++  +L L+  +
Sbjct: 53  NTVMWIASCTKLMTAICAMQLVERGQLRLDDPV 85


>gi|146260134|gb|ABQ14405.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.9 bits (100), Expect = 0.062,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 11/157 (7%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNAAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
            ++         A  + +    TT      +   LRK
Sbjct: 150 TRLDRWEPELNEA--IPNDEHDTTMP--VAMATTLRK 182


>gi|228476908|ref|ZP_04061553.1| conserved hypothetical protein [Streptococcus salivarius SK126]
 gi|228251482|gb|EEK10627.1| conserved hypothetical protein [Streptococcus salivarius SK126]
          Length = 465

 Score = 42.9 bits (100), Expect = 0.063,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 60/210 (28%), Gaps = 36/210 (17%)

Query: 84  MTL---------YIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGI 132
           MT           ++ + +   KL L  +  ++ T                   T  +  
Sbjct: 247 MTAGSTYKLPLNMLVMDEVNKGKLSLTERFDITNTEYEYQGEHDNYVAAFGGSMTIPEMQ 306

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
              +  S N  + A  E + G EK F  ++    K  G   T       +      TT  
Sbjct: 307 EYSLVYSENTPAYALAERLGGMEK-FYGMLDKYGKSKGEVKT-------IQMHGNKTTTD 358

Query: 193 DQAILGILLRK---NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSG 249
               +   L K   N+     Y       + N     +   L         K GY R + 
Sbjct: 359 YYIQVLDYLWKHQDNYKDILHYIGE---SFPNEYYKTYLPGLTIYQ-----KPGYVREAL 410

Query: 250 FNIVTSLRYKDDPIVAVV----MGMPTSQE 275
              V ++  +D P +  +    +G  T   
Sbjct: 411 N--VDAIVMEDTPYMVAIYTRYLGGSTENS 438


>gi|193078163|gb|ABO13107.2| Mur ligase middle region [Acinetobacter baumannii ATCC 17978]
          Length = 574

 Score = 42.9 bits (100), Expect = 0.063,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 16/151 (10%)

Query: 85  TLYI---IFEYLQSKKLHLNTQIPVSKTAATQNPS-KLYLKEKTYFTTEQGILALITRSA 140
           TL +     E    KK+  +    V +    +     L L++   +T  + +  LI   A
Sbjct: 34  TLLLIDYALEQFHQKKVQADEMYRVPEQKIKKIGEQNLGLEKNESYTFAELLQFLIFTQA 93

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
           NDV  A    + GS ++  +++S +A+   +          L   NQ+   ++  +L   
Sbjct: 94  NDVKDALSNMLLGSVEQTQLILSKRAEYYQL---------ALRAPNQL---KNLFLLVKH 141

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
           +     +  K F IR   ++N++      LL
Sbjct: 142 IYSYPAELKKLFFIRTVSFKNKVYQPITPLL 172


>gi|13236848|gb|AAK14792.1| extended-spectrum beta-lactamase TEM-88 [Klebsiella pneumoniae]
          Length = 286

 Score = 42.9 bits (100), Expect = 0.063,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|271970369|ref|YP_003344565.1| beta-lactamase [Streptosporangium roseum DSM 43021]
 gi|270513544|gb|ACZ91822.1| beta-lactamase [Streptosporangium roseum DSM 43021]
          Length = 635

 Score = 42.9 bits (100), Expect = 0.063,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSK 96
            +I ++S   ++ A+      V DV+  +    +Q     PAS+ K++T   + + ++  
Sbjct: 61  AAIAVVSGGRQVFAQ---GYGVADVDTGRPVDAEQ-TVFAPASVAKLITATAVMQLVEKG 116

Query: 97  KLHLNTQI 104
           ++ L+  +
Sbjct: 117 RIDLDADV 124


>gi|332527255|ref|ZP_08403323.1| beta-lactamase [Rubrivivax benzoatilyticus JA2]
 gi|332111675|gb|EGJ11656.1| beta-lactamase [Rubrivivax benzoatilyticus JA2]
          Length = 289

 Score = 42.9 bits (100), Expect = 0.064,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 52/161 (32%), Gaps = 15/161 (9%)

Query: 24  IQRNIQLMGKILFLSIIM-ISMASELHAKPKYSSI-----------VIDVNKNQMTGFKQ 71
           ++R        L L++    ++A E      + +I             D+   +  G +Q
Sbjct: 1   MKRRSFHAWAALTLAVAGRPALALEAGDADAFGAIERSVAGRLGVCAYDLETGRSLGHRQ 60

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLYLKEKTYFTTEQ 130
           DE     S  K +    +   +   +  L  +I   + A     P+          T  +
Sbjct: 61  DERFAMCSTFKWLLAAAVLARVDRGQERLERRIVFGREALLEYAPTTSRHAGGAGMTVAE 120

Query: 131 GILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
              A +T S N  +    + +   G    +   + ++  ++
Sbjct: 121 LCEAALTLSDNTAANLLLDTLGGPGGLTAWVRTLGDRTTRL 161


>gi|149184721|ref|ZP_01863039.1| Putative beta-lactamase [Erythrobacter sp. SD-21]
 gi|148832041|gb|EDL50474.1| Putative beta-lactamase [Erythrobacter sp. SD-21]
          Length = 370

 Score = 42.9 bits (100), Expect = 0.064,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NP 115
           V + +      +    P    S++K+       + +    L L+ ++ + +   T    P
Sbjct: 79  VTEADSLATMSYNGSAPMPQQSVSKLWVTMTALDRVDEGALDLSERVTIGREDLTVFYQP 138

Query: 116 SKLYLKEKTYFTTE--QGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGM 171
            +  +K +  F+T+    +   IT+S N  +     ++ G  + + F    + +  + G 
Sbjct: 139 IRNIVKARGSFSTDYGDLMDRAITQSDNTANDRLLRYVGGVQAVEGFLRRNAIEGVQFGA 198

Query: 172 Q 172
            
Sbjct: 199 D 199


>gi|2648043|emb|CAA65888.1| beta-lactamase [Serratia marcescens]
          Length = 285

 Score = 42.9 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E         I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGSTSGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I GS++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGSQELTAFLHNMGDHVTRL 160


>gi|301059978|ref|ZP_07200852.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [delta proteobacterium NaphS2]
 gi|300445857|gb|EFK09748.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [delta proteobacterium NaphS2]
          Length = 418

 Score = 42.9 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 10/86 (11%)

Query: 17 YPYGSIYIQRNIQLMGKILFLSIIMISMASELHAK---PKYSSI------VIDVNKNQMT 67
           P     +++ + L        I+++       AK   P    I      ++   + ++ 
Sbjct: 5  IPIKKRVLKKWVSLSCAFFLCQILILFYPHGAKAKKWLPCNQQIKTTDSFLLATPQGKVL 64

Query: 68 GFKQ-DEPRYPASLTKMMTLYIIFEY 92
            K  D+ R PAS  K++T     ++
Sbjct: 65 FEKNADKQRVPASTLKILTSLAALDH 90


>gi|56696278|ref|YP_166635.1| beta-lactamase, putative [Ruegeria pomeroyi DSS-3]
 gi|56678015|gb|AAV94681.1| beta-lactamase, putative [Ruegeria pomeroyi DSS-3]
          Length = 707

 Score = 42.9 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           ++   Q      D+     S +KMMT  ++ + +Q  K+ L+ ++
Sbjct: 50  ELGSGQ--PASADDRFEVGSQSKMMTAVLVLQLVQEGKVALDDKL 92


>gi|87311341|ref|ZP_01093462.1| Serine-type D-Ala-D-Ala carboxypeptidase [Blastopirellula marina
           DSM 3645]
 gi|87285921|gb|EAQ77834.1| Serine-type D-Ala-D-Ala carboxypeptidase [Blastopirellula marina
           DSM 3645]
          Length = 366

 Score = 42.9 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           V D+   Q    + D      S TK MT  +I + +Q+ K+ L+ ++
Sbjct: 45  VADLKTGQ--SMQTDMAFRIGSNTKTMTGVVILQLVQAGKIKLDDKV 89


>gi|291586265|gb|ADE18885.1| TEM-1 beta-lactamase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 176

 Score = 42.9 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 59/163 (36%), Gaps = 27/163 (16%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PASLTKMMT---LYI---IFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTT 128
           P     MM+   + +   +   + + +  L  +I  S+    +    ++ +L +    T 
Sbjct: 65  P-----MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTV 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            +   A IT S N  +      I G ++   F   M +   ++
Sbjct: 118 RELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|48527204|gb|AAT45742.1| beta-lactamase TEM-126 [Escherichia coli]
          Length = 286

 Score = 42.9 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 59/163 (36%), Gaps = 27/163 (16%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PASLTKMMT---LYI---IFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTT 128
           P     MM+   + +   +   + + +  L  +I  S+    +    ++ +L +    T 
Sbjct: 65  P-----MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTV 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            +   A IT S N  +      I G ++   F   M +   ++
Sbjct: 118 RELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|46019649|emb|CAG25427.1| beta-lactamase TEM [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|260586480|gb|ACX46122.1| beta-lactamase TEM-135 [Neisseria gonorrhoeae]
 gi|284157381|gb|ADB79815.1| ampicillin resistance protein [Escherichia coli]
 gi|300116045|dbj|BAJ10643.1| beta-lactamase [Neisseria gonorrhoeae]
          Length = 286

 Score = 42.9 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 59/163 (36%), Gaps = 27/163 (16%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PASLTKMMT---LYI---IFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTT 128
           P     MM+   + +   +   + + +  L  +I  S+    +    ++ +L +    T 
Sbjct: 65  P-----MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTV 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            +   A IT S N  +      I G ++   F   M +   ++
Sbjct: 118 RELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|3282024|emb|CAA76793.1| beta-lactamase class A [Klebsiella pneumoniae]
 gi|170652709|gb|ACB22021.1| extended spectrum beta-lactamase blaTEM-20 [Escherichia coli]
          Length = 286

 Score = 42.9 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 59/163 (36%), Gaps = 27/163 (16%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PASLTKMMT---LYI---IFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTT 128
           P     MM+   + +   +   + + +  L  +I  S+    +    ++ +L +    T 
Sbjct: 65  P-----MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTV 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            +   A IT S N  +      I G ++   F   M +   ++
Sbjct: 118 RELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|14164988|gb|AAK55329.1|AF361302_15 inactive beta-lactamase [Cloning vector pALTER(R)*-MAX]
 gi|595993|gb|AAA56769.1| truncated beta-lactamase gene with a 4bp deletion, repaired by
           mutagenesis with oligo GTTGCCATTGCTGCAGGCATCGTGGTG
           (nucleotides 4573-4595) restoring ampicillin resistance
           and PstI site by 4 bp insertion [Cloning vector pSIT]
 gi|1197550|gb|AAB39959.1| inactive beta-lactamase [Cloning vector pALTER-Ex1]
          Length = 190

 Score = 42.9 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 59/163 (36%), Gaps = 27/163 (16%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PASLTKMMT---LYI---IFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTT 128
           P     MM+   + +   +   + + +  L  +I  S+    +    ++ +L +    T 
Sbjct: 65  P-----MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTV 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            +   A IT S N  +      I G ++   F   M +   ++
Sbjct: 118 RELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|595783|gb|AAA56743.1| beta-lactamase [unidentified cloning vector]
 gi|644776|gb|AAA67273.1| beta-lactamase [Cloning vector pPROEX-1]
 gi|145307011|gb|ABP57192.1| beta-lactamase [Expression vector pTRC-LIC]
 gi|257359589|gb|ACV53162.1| beta lactamase [Expression vector pETIA]
 gi|307557352|gb|ADN52080.1| beta-lactamase [Cloning vector pBEM3]
          Length = 286

 Score = 42.9 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 59/163 (36%), Gaps = 27/163 (16%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PASLTKMMT---LYI---IFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTT 128
           P     MM+   + +   +   + + +  L  +I  S+    +    ++ +L +    T 
Sbjct: 65  P-----MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTV 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            +   A IT S N  +      I G ++   F   M +   ++
Sbjct: 118 RELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|1840129|gb|AAB47269.1| beta-lactamase [Expression vector pCal-n-ek]
 gi|3834576|gb|AAC71017.1| beta-lactamase [Cloning vector pCALnFLAG]
          Length = 286

 Score = 42.9 bits (100), Expect = 0.067,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA--TQNPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+         ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVDASPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|146260092|gb|ABQ14393.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.9 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|117950175|gb|ABK58471.1| beta-lactamase TEM-63 [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 277

 Score = 42.9 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 59/163 (36%), Gaps = 27/163 (16%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +      A          +E     +   I +D+N  ++    + E R+
Sbjct: 4   HFRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 63

Query: 77  PASLTKMMT---LYI---IFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTT 128
           P     MM+   + +   +   + + +  L  +I  S+      +P ++ +L +    T 
Sbjct: 64  P-----MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTV 116

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            +   A IT S N  +      I G ++   F   M +   ++
Sbjct: 117 RELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 159


>gi|2853027|gb|AAC02223.1| extended-spectrum beta-lactamase [Klebsiella pneumoniae]
          Length = 273

 Score = 42.9 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 59/163 (36%), Gaps = 27/163 (16%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +      A          +E     +   I +D+N  ++    + E R+
Sbjct: 4   HFRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 63

Query: 77  PASLTKMMT---LYI---IFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTT 128
           P     MM+   + +   +   + + +  L  +I  S+      +P ++ +L +    T 
Sbjct: 64  P-----MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTV 116

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            +   A IT S N  +      I G ++   F   M +   ++
Sbjct: 117 RELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 159


>gi|146260068|gb|ABQ14388.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.9 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|146260105|gb|ABQ14397.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.9 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|114570446|ref|YP_757126.1| beta-lactamase [Maricaulis maris MCS10]
 gi|114340908|gb|ABI66188.1| beta-lactamase [Maricaulis maris MCS10]
          Length = 425

 Score = 42.9 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 16/69 (23%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQ--------------DEPRYPASLTKMMTLYIIFEYLQS 95
           A+P Y++I+     +++    +              D P   AS+TK +T   I   ++ 
Sbjct: 60  ARPGYAAII--ARGDRIAYTSEAGEADLTNHIPFTVDTPVRIASMTKPVTAMAIMMLVER 117

Query: 96  KKLHLNTQI 104
            ++ L+  +
Sbjct: 118 GEISLDDPV 126


>gi|13272528|gb|AAK17194.1|AF332513_1 extended spectrum beta-lactamase TEM-63 [Escherichia coli]
          Length = 286

 Score = 42.9 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 59/163 (36%), Gaps = 27/163 (16%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +      A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PASLTKMMT---LYI---IFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTT 128
           P     MM+   + +   +   + + +  L  +I  S+      +P ++ +L +    T 
Sbjct: 65  P-----MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTV 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            +   A IT S N  +      I G ++   F   M +   ++
Sbjct: 118 RELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|86438856|emb|CAJ70625.1| mutant amyA-blaM fusion protein [unidentified expression vector]
          Length = 744

 Score = 42.9 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 498 ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 557

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 558 LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 615

Query: 167 KKI 169
            ++
Sbjct: 616 TRL 618


>gi|146260176|gb|ABQ14418.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.9 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|38098485|gb|AAR10958.1| extended-spectrum beta-lactamase TEM-131 [Salmonella enterica
           subsp. enterica serovar Typhimurium]
          Length = 286

 Score = 42.9 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 59/163 (36%), Gaps = 27/163 (16%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +      A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PASLTKMMT---LYI---IFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTT 128
           P     MM+   + +   +   + + +  L  +I  S+      +P ++ +L +    T 
Sbjct: 65  P-----MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTV 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            +   A IT S N  +      I G ++   F   M +   ++
Sbjct: 118 RELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|16973670|gb|AAL32364.1|AF399742_1 beta-lactamase [Cloning vector pSMART]
 gi|20301817|gb|AAM15720.1| beta-lactamase [cloning vector pSMART-LC]
 gi|22476926|gb|AAM97351.1| beta-lactamase [Cloning vector pEZSeq-Amp]
 gi|69048019|gb|AAY99674.1| beta-lactamase [Broad host range vector pBMT-1]
 gi|69048101|gb|AAY99688.1| beta-lactamase [Broad host range vector pBT-1]
 gi|69048159|gb|AAY99699.1| beta-lactamase [Broad host range vector pBMTB-1]
 gi|69048310|gb|AAY99718.1| beta-lactamase [Broad host range vector pBTB-1]
 gi|69048378|gb|AAY99734.1| beta-lactamase [Broad host range vector pBMTL-1]
 gi|69048448|gb|AAY99748.1| beta-lactamase [Broad host range vector pBTL-1]
 gi|89158284|gb|ABD62895.1| beta-lactamase [Cloning vector pJAZZ-KA]
 gi|258617726|gb|ACV83856.1| beta-lactamase [Broad host range vector pBTBX-1]
 gi|258617753|gb|ACV83877.1| beta-lactamase [Broad host range vector pBMTBX-1]
 gi|258617784|gb|ACV83902.1| beta-lactamase [Broad host range vector pBTBXh-1]
 gi|309378628|emb|CBX22699.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 286

 Score = 42.9 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESLRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLATIGGPKELTAFLHNMGDHVTRL 160


>gi|146260207|gb|ABQ14431.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.9 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|146260028|gb|ABQ14376.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.9 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 13/126 (10%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQNPSKLYLKEKTY-----FTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMS 163
             +     YL           T  +   A IT S N  +      I G ++   F   M 
Sbjct: 92  LVE-----YLPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMG 146

Query: 164 NKAKKI 169
           +   ++
Sbjct: 147 DHVTRL 152


>gi|146260174|gb|ABQ14417.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.9 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|146259999|gb|ABQ14363.1| beta-lactamase [uncultured soil bacterium]
          Length = 270

 Score = 42.9 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 30  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 89

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 90  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 147

Query: 167 KKI 169
            ++
Sbjct: 148 TRL 150


>gi|17999557|gb|AAK29174.1| extended-spectrum beta-lactamase VEB-2 [Pseudomonas aeruginosa]
          Length = 299

 Score = 42.9 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 86/268 (32%), Gaps = 34/268 (12%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASE---------LHAKPKYSSIVIDVNKNQ--MTGFK 70
           + I + I L+   LF +I+  +  ++         L AK     + I  N N+       
Sbjct: 1   MKIVKRILLVLLSLFFTIVYSNAQADNLTLKIENVLKAKNARIGVAI-FNSNEKDTLKIN 59

Query: 71  QDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTY 125
            D      S+ K  +     +   +    L    +I ++       T +P K      T 
Sbjct: 60  NDFHFPMQSVMKFPI--ALAVLSEIDKGNLSFEQKIEITPQDLLPKTWSPIKEEFPNGTT 117

Query: 126 FTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
            T EQ +   ++ S N       + I G  S +KF          I              
Sbjct: 118 LTIEQILNYTVSESDNIGCDILLKLIGGTDSVQKFLNANHFTDISIKANEEQMHKDWNTQ 177

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH----NKLLNKMH--NI 237
            +N  T       +  LL   +    +  S + + +  +I+       N+L  ++    I
Sbjct: 178 YQNWATP----TAMNKLLIDTYNNKNQLLSKKSYDFIWKIMRETTTGSNRLKGQLPKNTI 233

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              KTG    SG N   +    D  ++ 
Sbjct: 234 VAHKTGT---SGINNGIAAATNDVGVIT 258


>gi|21541785|gb|AAM61953.1|AF516720_1 beta-lactamase TEM-105 [Escherichia coli]
          Length = 286

 Score = 42.9 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCN 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|146260157|gb|ABQ14411.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.9 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|114386382|gb|ABI74447.1| beta lactamase TEM-152 [Escherichia coli]
          Length = 286

 Score = 42.9 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 63/180 (35%), Gaps = 17/180 (9%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  P-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMVSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           A IT S N  +      I G ++   F   M +   ++         A    +++    A
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAIPNDERDTTMPA 182


>gi|146260209|gb|ABQ14432.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.9 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|66827997|ref|XP_647353.1| beta-lactamase-type transpeptidase fold containing protein
           [Dictyostelium discoideum AX4]
 gi|60475442|gb|EAL73377.1| beta-lactamase-type transpeptidase fold containing protein
           [Dictyostelium discoideum AX4]
          Length = 332

 Score = 42.9 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 47/153 (30%), Gaps = 35/153 (22%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           V D     +        +  AS  K+  L  +F+ +++    L  QI  S          
Sbjct: 63  VTDFKSFSILSENSQNSQQTASTIKLWVLLSVFKDIEAGLYTLEKQIECS---------- 112

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
             L      T EQ I  +I  S N  + +               +++   ++GM ++ + 
Sbjct: 113 TGL-----ITVEQCIALMIGVSDNCATYSLTALTK------IESVNSLFSELGMNDSQFI 161

Query: 178 N-----ASGLHDK---------NQITTARDQAI 196
                   G  D          N + ++ D   
Sbjct: 162 EWCFSTCVGYSDPCPNVSGGSGNNVLSSHDVIH 194


>gi|270311272|gb|ACZ72747.1| beta-lactamase [Achromobacter denitrificans]
 gi|270311274|gb|ACZ72748.1| beta-lactamase [Elizabethkingia meningoseptica]
 gi|270311276|gb|ACZ72749.1| beta-lactamase [Chryseobacterium gleum]
          Length = 286

 Score = 42.9 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 59/163 (36%), Gaps = 27/163 (16%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PASLTKMMT---LYI---IFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTT 128
           P     MM+   + I   +   + + +  L  +I  S+    +    ++ +L +    T 
Sbjct: 65  P-----MMSTFKVLICGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTV 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            +   A IT S N  +      I G ++   F   M +   ++
Sbjct: 118 RELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|256378013|ref|YP_003101673.1| hypothetical protein Amir_3960 [Actinosynnema mirum DSM 43827]
 gi|255922316|gb|ACU37827.1| hypothetical protein Amir_3960 [Actinosynnema mirum DSM 43827]
          Length = 295

 Score = 42.9 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 2/102 (1%)

Query: 48  LHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV- 106
             A    S +V D+   Q    + D     ASL K+       E ++  +L   T++ V 
Sbjct: 10  ADAGLDGSFLVRDLRTGQEIAIEPDVEWPMASLVKVPLAVATLERVRRGELDGATRVEVR 69

Query: 107 -SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
            +  A   +P   + +       +  +   +  S +  + A 
Sbjct: 70  PAPDAPPGSPGLSWFRHPVEVAVDDLLYLGVAISDSRAAGAL 111


>gi|156720183|dbj|BAF76730.1| D-amino-acid amidase [Brevibacterium iodinum]
          Length = 266

 Score = 42.9 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 56/136 (41%), Gaps = 19/136 (13%)

Query: 53  KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI--PVSKT 109
           ++S++  DV+  + +    +++    AS+ K+  L+   +  +   L L  ++    S+ 
Sbjct: 13  RFSALAFDVDSGERVFAHNENDELDTASMGKVFLLHTALQMFKDGTLDLEERLHRRPSER 72

Query: 110 AATQNPSKL-YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
               + S + YL E+   +     L +   S N  +      +          + N+ +K
Sbjct: 73  ---VDESGIWYLMEQDDLSIFDVALLIGAFSDNFATNVLIRRVG------LENVGNQVEK 123

Query: 169 IGMQNTIYKNASGLHD 184
           +G +N      SGLHD
Sbjct: 124 LGYRN------SGLHD 133


>gi|146260192|gb|ABQ14426.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.9 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|21388250|emb|CAC85660.1| TEM-93 ES-beta-lactamase [Escherichia coli]
          Length = 286

 Score = 42.9 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 59/163 (36%), Gaps = 27/163 (16%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PASLTKMMT---LYI---IFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTT 128
           P     MM+   + +   +   + + +  L  +I  S+    +    ++ +L +    T 
Sbjct: 65  P-----MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTV 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            +   A IT S N  +      I G ++   F   M +   ++
Sbjct: 118 RELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|1003002|gb|AAA77064.1| beta-lactamase [Cloning vector pRSQ]
 gi|1546042|gb|AAB16840.1| beta-lactamase [Cloning vector pRSQ2-LEU2]
 gi|1546047|gb|AAB16844.1| beta-lactamase [Cloning vector pRSQ2-URA3]
 gi|2801668|gb|AAC40223.1| beta-lactamase [Cloning vector yGALset986]
 gi|6642842|gb|AAF20319.1| beta-lactamase [Yeast two-hybrid vector pCD.1]
 gi|6642845|gb|AAF20321.1| beta-lactamase [Yeast two-hybrid vector pCD.2]
 gi|6642849|gb|AAF20324.1| beta-lactamase [Yeast two-hybrid vector pC-ACT.1]
 gi|6642853|gb|AAF20327.1| beta-lactamase [Yeast two-hybrid vector pC-ACT.2]
 gi|37812662|gb|AAR04149.1| beta lactamase [UAS-less reporter vector pMELalpha]
 gi|37812675|gb|AAR04158.1| beta lactamase [UAS-less reporter vector pMELalpha2]
 gi|38327509|gb|AAR17786.1| beta-lactamase [Cloning vector pPGA89]
          Length = 286

 Score = 42.9 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFFHNMGDHVTRL 160


>gi|312897789|ref|ZP_07757205.1| conserved domain protein [Megasphaera micronuciformis F0359]
 gi|310621173|gb|EFQ04717.1| conserved domain protein [Megasphaera micronuciformis F0359]
          Length = 264

 Score = 42.9 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 17/143 (11%)

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
           G K+D     ASL K+  +   F   +   L  +  + V      +  S    +      
Sbjct: 39  GGKEDVLMPAASLIKIAVMIEAFRRKKEGTLDFSECLTV--NDVVEGGSFYIKRRDDSVP 96

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD--- 184
             + I  +IT S N  +      +          ++   +  G+  T  +    + D   
Sbjct: 97  IYELIFHMITESDNTCTNMLIRSLG------VERINETVRSFGLVKTKLRR--HMMDFEA 148

Query: 185 ----KNQITTARDQAILGILLRK 203
               +   TT R+ + L  LL +
Sbjct: 149 ARRGEENTTTMRETSELLSLLAQ 171


>gi|256397532|ref|YP_003119096.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Catenulispora acidiphila DSM 44928]
 gi|256363758|gb|ACU77255.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Catenulispora acidiphila DSM 44928]
          Length = 508

 Score = 42.9 bits (100), Expect = 0.073,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 9/113 (7%)

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS------TAFGEFISGSEK 156
           Q+   K A     S   L   T       +  ++T S ND++       A  +    +  
Sbjct: 297 QVT-GKPATASAGSGAELARVTSPRLANLVEHMLTVSDNDLAESLLRHVALADSKPATFD 355

Query: 157 KFAILMSNKAKKIGMQNT--IYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
                + ++  K+G+  T     + SGL  K+ IT A +  +L      + P+
Sbjct: 356 GGVAAVRDQLGKLGLDLTGLNVLDGSGLSRKDSITPAFEVKVLSTAAADDHPE 408


>gi|146260022|gb|ABQ14373.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.9 bits (100), Expect = 0.073,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 -ATQNP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
               +P ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVKYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|146260032|gb|ABQ14377.1| beta-lactamase [uncultured soil bacterium]
 gi|146260045|gb|ABQ14382.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.9 bits (100), Expect = 0.073,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|146260043|gb|ABQ14381.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.9 bits (100), Expect = 0.073,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|146260162|gb|ABQ14413.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.9 bits (100), Expect = 0.073,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|146260080|gb|ABQ14390.1| beta-lactamase [uncultured soil bacterium]
 gi|146260110|gb|ABQ14398.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.9 bits (100), Expect = 0.073,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|509142|emb|CAA48214.1| beta-lactamase,human IgG3 hinge fusion [synthetic construct]
          Length = 356

 Score = 42.9 bits (100), Expect = 0.073,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|325954294|ref|YP_004237954.1| beta-lactamase [Weeksella virosa DSM 16922]
 gi|323436912|gb|ADX67376.1| beta-lactamase [Weeksella virosa DSM 16922]
          Length = 419

 Score = 42.9 bits (100), Expect = 0.073,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 51  KPKYSSIVIDVNKNQMTGF---------KQ-----DEPRYPASLTKMMTLYIIFEYLQSK 96
           +P    +++      +            K      + P + AS++K+MT   I + ++ K
Sbjct: 78  EPVSGGMLV-AKNGLILFEAYDGFADVEKNIPLTAETPIHIASVSKVMTSLAILKLVEHK 136

Query: 97  KLHLNTQI 104
           KL L+  +
Sbjct: 137 KLTLDQTV 144


>gi|320106574|ref|YP_004182164.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Terriglobus
           saanensis SP1PR4]
 gi|319925095|gb|ADV82170.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Terriglobus
           saanensis SP1PR4]
          Length = 339

 Score = 42.9 bits (100), Expect = 0.073,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 44/148 (29%), Gaps = 28/148 (18%)

Query: 62  NKNQMTGFKQDEPRYPASLTKMMTLYIIFEY---LQSKKLHLNTQIPVSKTAATQNPSKL 118
           +  +      D P   AS  K+    + FE    + + +      I + K     N S L
Sbjct: 55  STGKTVAMDADLPLQTASTIKL--AML-FEATRQVAAGQAKWEEPITL-KAVDRVNGSGL 110

Query: 119 --YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF-AILMSNKAKKIGMQNT- 174
             ++      T +     ++  S N  +            +F    +      +G+  T 
Sbjct: 111 LTFMDAPLTLTLKDVATLMVIVSDNTATNLM-------IDRFTTKAVDEDMMALGLDQTW 163

Query: 175 ----IYKNASGLHDKNQ------ITTAR 192
                    SG    +Q       TTAR
Sbjct: 164 LYKKSMVPPSGPMPPDQPKYGLGKTTAR 191


>gi|139438418|ref|ZP_01771934.1| Hypothetical protein COLAER_00924 [Collinsella aerofaciens ATCC
           25986]
 gi|133775957|gb|EBA39777.1| Hypothetical protein COLAER_00924 [Collinsella aerofaciens ATCC
           25986]
          Length = 330

 Score = 42.9 bits (100), Expect = 0.073,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 74/241 (30%), Gaps = 40/241 (16%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYL-QSKKLHLNTQIPVSKTAATQNPSKL 118
           D++  +   +  D   Y AS  K +    I E L +S ++ L+  +      AT     +
Sbjct: 110 DLSSGRGVTYNADVEVYGASSYKALYALYICETLVESGRVSLDGPL------ATYGGCSM 163

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAF--GEFISGSEKKFAILMSNKAKKIG-MQNTI 175
             +     T    I   +  S ND   A        G E   A L  +    +  M +  
Sbjct: 164 GWQ-----TVRDLIENAVANSDNDSFIALRAAFDHDGYEDWIANLGVDDETALNPMSDFP 218

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
                        T+AR        L +   +Y    +    ++ + ++ + ++   +  
Sbjct: 219 TYCP--------RTSAR--------LWREMSEYLSMDTETS-QWLSGLLASTSRSFIRDG 261

Query: 236 NIDGI-----KTGYTRNSGF---NIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSF 287
             D       K G+    G+        +       V  VM    S +R  +    I   
Sbjct: 262 IADDQVLVRNKAGWISEDGYYSTCDAGLIDIDGRTYVMSVMTSMPSSDRSSEVTAAIAKA 321

Query: 288 L 288
           L
Sbjct: 322 L 322


>gi|21388252|emb|CAC85661.1| TEM-94 ES-beta-lactamase [Escherichia coli]
          Length = 286

 Score = 42.9 bits (100), Expect = 0.073,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 59/163 (36%), Gaps = 27/163 (16%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +      A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PASLTKMMT---LYI---IFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTT 128
           P     MM+   + +   +   + + +  L  +I  S+      +P ++ +L +    T 
Sbjct: 65  P-----MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTV 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            +   A IT S N  +      I G ++   F   M +   ++
Sbjct: 118 RELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|333025317|ref|ZP_08453381.1| hypothetical protein STTU_2821 [Streptomyces sp. Tu6071]
 gi|332745169|gb|EGJ75610.1| hypothetical protein STTU_2821 [Streptomyces sp. Tu6071]
          Length = 541

 Score = 42.9 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 55  SSIVIDVNKN-QMTGFKQDEPRYPASLTKMMTLYIIFEYL 93
           S+ V+D+    Q+ G        PAS+TK+ T     + L
Sbjct: 141 SASVVDLTSGEQVYGNHAARAATPASVTKIATAVAALDAL 180



 Score = 36.0 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 8/80 (10%)

Query: 135 LITRSANDVSTAFGEFIS---GSEKKF---AILMSNKAKKIGM--QNTIYKNASGLHDKN 186
           ++T S ND++       +   G++  F   A  + ++  K+G+  ++T + + SGL   +
Sbjct: 374 MLTYSDNDIAEHLARQTALATGAKADFKGGARAVHDRLDKLGLPVEDTSFHDGSGLDRAD 433

Query: 187 QITTARDQAILGILLRKNFP 206
           ++T     A+L    RK+ P
Sbjct: 434 KLTPGLLTALLAEAARKDQP 453


>gi|291302147|ref|YP_003513425.1| beta-lactamase [Stackebrandtia nassauensis DSM 44728]
 gi|290571367|gb|ADD44332.1| beta-lactamase [Stackebrandtia nassauensis DSM 44728]
          Length = 374

 Score = 42.9 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 60/204 (29%), Gaps = 40/204 (19%)

Query: 55  SSI-VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S++ V DV+  +      D      S+TK +T   I   +++  L L+  +         
Sbjct: 65  SAVGVADVDSGR--PMSPDFEHRIGSITKTVTAVAILRQVEAGNLDLDDPV------GDY 116

Query: 114 NPSKLYLKEKTYFTTEQ-GILALITRSANDVSTA-FGEFISGSEK-KFAILMSNKAKKIG 170
            P  L  +     T            +  D         +   EK ++      K  +IG
Sbjct: 117 LPRLLPGERGDKITVRMLLDHTSGINNHVDAMFPDLETSLDTVEKYRYRTWKPEKLARIG 176

Query: 171 MQ--------------NTIYK-------NASGLHDKNQIT-------TARDQAILGILLR 202
           ++              NT Y          +G   +  IT         RD    G    
Sbjct: 177 LKMEPTGEPGEKKSYSNTNYVIAGLVLEQVTGEDAEEHITREVIDRAGMRDTYFPGRDPS 236

Query: 203 KNFPQYYKYFSIRKFRYRNRIITN 226
            + P    Y +IR   +    + N
Sbjct: 237 IDGPHSKAYLTIRNGEHGEFSVYN 260


>gi|145296695|ref|YP_001139516.1| hypothetical protein cgR_2600 [Corynebacterium glutamicum R]
 gi|140846615|dbj|BAF55614.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 427

 Score = 42.9 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 7/72 (9%)

Query: 60  DVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           DV   ++     Q     PAS TK++T  +    L   +      I  ++    + P  +
Sbjct: 88  DVESGEVVWEQNQGTAVRPASATKILTAAVALYEL--GR---EDTIK-TEVVEGEQPGTV 141

Query: 119 YLKEKTYFTTEQ 130
            +K     T  +
Sbjct: 142 VIKAGGDVTLSE 153


>gi|15149328|gb|AAK85244.1| inhibitor resistant TEM beta-lactamase [Escherichia coli]
          Length = 286

 Score = 42.9 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  P-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMVSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|189189214|ref|XP_001930946.1| beta-lactamase family protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187972552|gb|EDU40051.1| beta-lactamase family protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 402

 Score = 42.9 bits (100), Expect = 0.075,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 17/33 (51%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +   + AS TK+MT     + ++  +L L+  +
Sbjct: 53  NTVMWIASCTKLMTAICAMQLVERGQLRLDDPV 85


>gi|146260199|gb|ABQ14428.1| beta-lactamase [uncultured soil bacterium]
          Length = 271

 Score = 42.9 bits (100), Expect = 0.075,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|146260017|gb|ABQ14371.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.9 bits (100), Expect = 0.075,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|146260172|gb|ABQ14416.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.9 bits (100), Expect = 0.075,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|320037063|gb|EFW19001.1| transesterase [Coccidioides posadasii str. Silveira]
          Length = 145

 Score = 42.9 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 18/35 (51%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           K D+     SLTK+MT   + + ++   + L+  +
Sbjct: 51  KNDDIMMIFSLTKLMTSIAVLQCVERGLIQLDDDV 85


>gi|46244156|gb|AAP93842.1| beta-lactamase [Citrobacter freundii]
          Length = 234

 Score = 42.9 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 16  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 75

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 76  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 133

Query: 167 KKI 169
            ++
Sbjct: 134 TRL 136


>gi|67464385|pdb|1ZG6|A Chain A, Tem1 Beta Lactamase Mutant S70g
          Length = 286

 Score = 42.9 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 59/163 (36%), Gaps = 27/163 (16%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PASLTKMM-T--LYI---IFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTT 128
           P     MM T  + +   +   + + +  L  +I  S+    +    ++ +L +    T 
Sbjct: 65  P-----MMGTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTV 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            +   A IT S N  +      I G ++   F   M +   ++
Sbjct: 118 RELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|146260002|gb|ABQ14364.1| beta-lactamase [uncultured soil bacterium]
 gi|146260004|gb|ABQ14365.1| beta-lactamase [uncultured soil bacterium]
 gi|146260011|gb|ABQ14368.1| beta-lactamase [uncultured soil bacterium]
 gi|146260013|gb|ABQ14369.1| beta-lactamase [uncultured soil bacterium]
 gi|146260015|gb|ABQ14370.1| beta-lactamase [uncultured soil bacterium]
 gi|146260019|gb|ABQ14372.1| beta-lactamase [uncultured soil bacterium]
 gi|146260024|gb|ABQ14374.1| beta-lactamase [uncultured soil bacterium]
 gi|146260026|gb|ABQ14375.1| beta-lactamase [uncultured soil bacterium]
 gi|146260035|gb|ABQ14378.1| beta-lactamase [uncultured soil bacterium]
 gi|146260037|gb|ABQ14379.1| beta-lactamase [uncultured soil bacterium]
 gi|146260039|gb|ABQ14380.1| beta-lactamase [uncultured soil bacterium]
 gi|146260049|gb|ABQ14383.1| beta-lactamase [uncultured soil bacterium]
 gi|146260063|gb|ABQ14387.1| beta-lactamase [uncultured soil bacterium]
 gi|146260097|gb|ABQ14395.1| beta-lactamase [uncultured soil bacterium]
 gi|146260114|gb|ABQ14399.1| beta-lactamase [uncultured soil bacterium]
 gi|146260136|gb|ABQ14406.1| beta-lactamase [uncultured soil bacterium]
 gi|146260155|gb|ABQ14410.1| beta-lactamase [uncultured soil bacterium]
 gi|146260166|gb|ABQ14414.1| beta-lactamase [uncultured soil bacterium]
 gi|146260178|gb|ABQ14419.1| beta-lactamase [uncultured soil bacterium]
 gi|146260188|gb|ABQ14424.1| beta-lactamase [uncultured soil bacterium]
 gi|146260214|gb|ABQ14434.1| beta-lactamase [uncultured soil bacterium]
 gi|146260218|gb|ABQ14435.1| beta-lactamase [uncultured soil bacterium]
 gi|146260223|gb|ABQ14437.1| beta-lactamase [uncultured soil bacterium]
 gi|146260225|gb|ABQ14438.1| beta-lactamase [uncultured soil bacterium]
 gi|146260235|gb|ABQ14442.1| beta-lactamase [uncultured soil bacterium]
 gi|146260242|gb|ABQ14445.1| beta-lactamase [uncultured soil bacterium]
 gi|146260250|gb|ABQ14447.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.9 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|146260130|gb|ABQ14404.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.9 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|48734422|gb|AAT46413.1| beta-lactamase TEM-109 [Escherichia coli]
          Length = 286

 Score = 42.9 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 64/180 (35%), Gaps = 17/180 (9%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +   
Sbjct: 65  PMLSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           A IT S N  +      I G ++   F   M +   ++         A    +++    A
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAIPNDERDTTMPA 182


>gi|192988211|pdb|2V1Z|A Chain A, Structure Of A Tem-1 Beta-Lactamase Insertant
           Allosterically Regulated By Kanamycin And Anions.
 gi|192988213|pdb|2V20|A Chain A, Structure Of A Tem-1 Beta-Lactamase Insertant
           Allosterically Regulated By Kanamycin And Anions.
           Complex With Sulfate
          Length = 291

 Score = 42.9 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 7/122 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA- 110
           +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+   
Sbjct: 23  RVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDL 82

Query: 111 ATQNP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAK 167
              +P ++ +L +    T  +   A IT S N  +      I G ++   F   M +   
Sbjct: 83  VKYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVT 140

Query: 168 KI 169
           ++
Sbjct: 141 RL 142


>gi|124002935|ref|ZP_01687786.1| beta-lactamase [Microscilla marina ATCC 23134]
 gi|123991585|gb|EAY30993.1| beta-lactamase [Microscilla marina ATCC 23134]
          Length = 426

 Score = 42.9 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 71  QDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
            ++  YP AS++KM T   + + ++  KL ++  + 
Sbjct: 82  DNQTIYPWASISKMFTSIAVLQLIEEGKLKIDDPVT 117


>gi|302381387|ref|YP_003817210.1| beta-lactamase [Brevundimonas subvibrioides ATCC 15264]
 gi|302192015|gb|ADK99586.1| beta-lactamase [Brevundimonas subvibrioides ATCC 15264]
          Length = 349

 Score = 42.5 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           AS++KM+T  ++F+ + +  L L+T +     A     + +        T  Q 
Sbjct: 77  ASVSKMITAILVFQQIDAGTLALDTPV-----ATYLPGTTV--ANADRITLRQL 123


>gi|169401966|gb|ACA53201.1| TEM beta-lactamase [Bacillus sp. BT-B191]
          Length = 272

 Score = 42.5 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 26  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 85

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 86  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 143

Query: 167 KKI 169
            ++
Sbjct: 144 TRL 146


>gi|146259995|gb|ABQ14361.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.5 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|146260160|gb|ABQ14412.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.5 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|46244160|gb|AAP93844.1| beta-lactamase [Hafnia alvei]
          Length = 232

 Score = 42.5 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 18  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 77

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 78  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 135

Query: 167 KKI 169
            ++
Sbjct: 136 TRL 138


>gi|16798372|gb|AAL29434.1|AF427128_1 inhibitor-resistant beta-lactamase TEM-82 [Escherichia coli]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  P-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMVSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|311280737|ref|YP_003942968.1| beta-lactamase [Enterobacter cloacae SCF1]
 gi|308749932|gb|ADO49684.1| beta-lactamase [Enterobacter cloacae SCF1]
          Length = 385

 Score = 42.5 bits (99), Expect = 0.079,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D     ASLTK+MT  ++ + L    + LN   P+SK A     +++   +    T    
Sbjct: 80  DSVIRIASLTKLMTSEMLVKLLDQGVVKLND--PLSKYA--PPGARVPTYQGAPITLVNL 135


>gi|146260070|gb|ABQ14389.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.5 bits (99), Expect = 0.079,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYAPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|146260127|gb|ABQ14403.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.5 bits (99), Expect = 0.079,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|156935081|ref|YP_001438997.1| beta-lactam binding protein AmpH [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156533335|gb|ABU78161.1| hypothetical protein ESA_02932 [Cronobacter sakazakii ATCC BAA-894]
          Length = 385

 Score = 42.5 bits (99), Expect = 0.080,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D     ASLTK+MT  ++ + L    + LN   P+S+ A     +++   +         
Sbjct: 80  DSVIRIASLTKLMTSEMLVKMLDQGVVKLND--PLSRYA--PPGARVPTYQGEPIRLVNL 135


>gi|148271516|ref|YP_001221077.1| hypothetical protein CMM_0337 [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147829446|emb|CAN00359.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 447

 Score = 42.5 bits (99), Expect = 0.080,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 30/84 (35%), Gaps = 7/84 (8%)

Query: 73  EPRYPASLTKMMTLYII---FEYLQSKKLHLNTQIPVSKTAATQNPSKL-YLKEKTYFTT 128
           + R   S+ K+   Y++    + ++  ++  +  + V+    +    +L      T  + 
Sbjct: 180 DARPIGSIVKL---YVLGALVQAVEEGRIGWDDPLTVTDDVRSLPSGELQDAPTGTVVSV 236

Query: 129 EQGILALITRSANDVSTAFGEFIS 152
                 +I  S N  +    + + 
Sbjct: 237 RDTAEKMIAISDNTATDMLIQAVG 260


>gi|46244158|gb|AAP93843.1| beta-lactamase [Klebsiella oxytoca]
          Length = 229

 Score = 42.5 bits (99), Expect = 0.080,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 18  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 77

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 78  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 135

Query: 167 KKI 169
            ++
Sbjct: 136 TRL 138


>gi|145596821|ref|YP_001161118.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Salinispora tropica CNB-440]
 gi|145306158|gb|ABP56740.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Salinispora tropica CNB-440]
          Length = 593

 Score = 42.5 bits (99), Expect = 0.081,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 6/68 (8%)

Query: 58  VIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           V DV    +   +   +   PAS+TK++T   +             +IP    A      
Sbjct: 207 VTDVASGAILYDQGAADGTVPASVTKLVTAATVLAARDPGH-----RIPTRAVAGAAPGE 261

Query: 117 KLYLKEKT 124
            + +    
Sbjct: 262 VVLIGGGD 269


>gi|223936735|ref|ZP_03628645.1| beta-lactamase [bacterium Ellin514]
 gi|223894586|gb|EEF61037.1| beta-lactamase [bacterium Ellin514]
          Length = 279

 Score = 42.5 bits (99), Expect = 0.082,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 87/269 (32%), Gaps = 31/269 (11%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           V+D+  N       +     AS  K+  L  +++   + K  L     + K   T + S 
Sbjct: 27  VLDLTSNDRFDINAEMVFPQASAIKIPVLMEVYKQAHAGKFSLTDTRRIEKQDKT-SGSG 85

Query: 118 LYLKEKT---YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           +  +        T     + +I  S N  +    + +          ++     +G + T
Sbjct: 86  ILFELGDGTVQMTIHDLCILMILISDNTATNLLIDLVG------ITNVNQTLNSLGFEQT 139

Query: 175 IY------KNASGLHDKNQITTARDQAILGILLRKNFP------QYYKYFSIRKFRYRNR 222
                     AS   D+N  T A    IL +L +  F                K      
Sbjct: 140 RLQRRMMDAAASLRGDENLSTPAEGVRILELLHKGEFINRSICDDILAILKKPKPTNLTA 199

Query: 223 IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
            + +   +  K  NI G+ T +           +  KD P + V+M     +     A++
Sbjct: 200 GLPDGTVVATKPGNISGVATEW---------AIVYLKDRPYIVVIMENYGVEHDAPDAMK 250

Query: 283 LITSFLEKKTLKHQQTHRKDNLSSTSLKK 311
            I+  L +   +  +  +     + S+++
Sbjct: 251 AISQTLHEYFARLSRATKYGAYVAPSVQR 279


>gi|6176544|gb|AAF05612.1|AF190693_1 inhibitor-resistant beta-lactamase TEM-78 [Escherichia coli]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.082,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  P-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMVSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|78061533|ref|YP_371441.1| Beta-lactamase [Burkholderia sp. 383]
 gi|77969418|gb|ABB10797.1| Beta-lactamase [Burkholderia sp. 383]
          Length = 530

 Score = 42.5 bits (99), Expect = 0.082,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 20/33 (60%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           D      S+TK+MT +++  Y+++ ++ L+  +
Sbjct: 102 DTRLQIGSVTKVMTSHLLMRYVEAGRIGLDDPV 134


>gi|120611221|ref|YP_970899.1| beta-lactamase [Acidovorax citrulli AAC00-1]
 gi|120589685|gb|ABM33125.1| Beta-lactamase [Acidovorax citrulli AAC00-1]
          Length = 300

 Score = 42.5 bits (99), Expect = 0.082,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 6/119 (5%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPS 116
           ++D+   +    + DE     S  K++    +   +      L+ +I   K+     +P+
Sbjct: 50  LLDMATGRQDAHRGDERFPLCSTFKLLLAAHVLRRVDQGHERLDRRISYRKSDLVEYSPA 109

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
                +    T EQ   A +T S N  +        G  +     ++   + +G   T 
Sbjct: 110 TERHADGDGMTVEQLCEAAVTLSDNTAANLLLGTQGGPLE-----LTAWLRSLGDTQTR 163


>gi|40317280|gb|AAR84298.1| TEM-132 extended-spectrum beta-lactamase [Klebsiella pneumoniae]
 gi|58430778|dbj|BAD89186.1| TEM-derived extended-spectrum beta-lactamase [Klebsiella
           pneumoniae]
 gi|58430780|dbj|BAD89187.1| TEM-derived extended-spectrum beta-lactamase [Escherichia coli]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.082,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 63/180 (35%), Gaps = 17/180 (9%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           A IT S N  +      I G ++   F   M +   ++         A    +++    A
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAVPNDERDTTMPA 182


>gi|161367442|gb|ABX71157.1| extended-spectrum beta-lactamase TEM-162 [Klebsiella pneumoniae]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.083,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQVGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|9257166|pdb|1CK3|A Chain A, N276d Mutant Of Escherichia Coli Tem-1 Beta-Lactamase
          Length = 263

 Score = 42.5 bits (99), Expect = 0.083,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 17  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 76

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 77  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 134

Query: 167 KKI 169
            ++
Sbjct: 135 TRL 137


>gi|146260119|gb|ABQ14401.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.5 bits (99), Expect = 0.084,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLATIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|145558692|gb|ABP73259.1| beta-lactamase TEM-131 [Salmonella sp. 467]
          Length = 263

 Score = 42.5 bits (99), Expect = 0.084,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 17/128 (13%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMT---LYI---IFEYLQSKKLHLNTQIP 105
            +   I +D+N  ++    + E R+P     MM+   + +   +   + + +  L  +I 
Sbjct: 29  ARVGYIELDLNSGKILESFRPEERFP-----MMSTFKVLLCGAVLSRVDAGQEQLGRRIH 83

Query: 106 VSKTA-ATQNP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAIL 161
            S+      +P ++ +L +    T  +   A IT S N  +      I G ++   F   
Sbjct: 84  YSQNDLVKYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHN 141

Query: 162 MSNKAKKI 169
           M +   ++
Sbjct: 142 MGDHVTRL 149


>gi|46370393|gb|AAS89982.1| beta-lactamase [Escherichia coli]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.084,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLRNMGDHVTRL 160


>gi|330812922|ref|XP_003291365.1| hypothetical protein DICPUDRAFT_155952 [Dictyostelium purpureum]
 gi|325078465|gb|EGC32115.1| hypothetical protein DICPUDRAFT_155952 [Dictyostelium purpureum]
          Length = 343

 Score = 42.5 bits (99), Expect = 0.085,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 21/123 (17%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
             V D     +       P+  AS  K+  L  +F+ +++    L+ QI  S        
Sbjct: 78  WAVTDFKTFNIQSSNSQNPQQTASTIKLWVLLSVFKDIEAGLYTLDKQIECS-------- 129

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
               L      T EQ I  +I  S N  + +       S       ++   K +GM ++ 
Sbjct: 130 --TGL-----ITVEQCIALMIGVSDNCATYSLTALTKLS------SVNALFKTLGMDDSQ 176

Query: 176 YKN 178
           +  
Sbjct: 177 FHE 179


>gi|27228440|ref|NP_758767.1| beta lactamase [Erwinia amylovora]
 gi|26245317|gb|AAM94881.1| beta lactamase [Erwinia amylovora ATCC BAA-2158]
          Length = 283

 Score = 42.5 bits (99), Expect = 0.085,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGXKELTAFLHNMGDHVTRL 160


>gi|331701606|ref|YP_004398565.1| beta-lactamase class A [Lactobacillus buchneri NRRL B-30929]
 gi|329128949|gb|AEB73502.1| beta-lactamase class A [Lactobacillus buchneri NRRL B-30929]
          Length = 248

 Score = 42.5 bits (99), Expect = 0.086,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 57/160 (35%), Gaps = 6/160 (3%)

Query: 62  NKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
           +  Q          +P ASL K+     I   +    + L+  + VS          L L
Sbjct: 25  SNGQTLVDHDSHEAFPSASLIKLA----ILNDVLDSNVDLDQSVDVSTDELVGGAGILQL 80

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
                +     +  +I+ S N  +      +  +  +   L ++   + G++  +    +
Sbjct: 81  MSVRPWKLRDLLALMISVSDNSATNVVISLMGMNHIQH-YLQTHDFHETGLERYLMDGRA 139

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
               KN  T+A +   L      N  +   +F+ ++FRY+
Sbjct: 140 LASGKNNYTSAAESLRLLQQALHNGSEVQSWFANQQFRYK 179


>gi|288190918|gb|ADC43821.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
          Length = 212

 Score = 42.5 bits (99), Expect = 0.086,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 22  ARVGYIELDLNSGKILESFRPEERFPXMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 81

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 82  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 139

Query: 167 KKI 169
            ++
Sbjct: 140 TRL 142


>gi|146260054|gb|ABQ14384.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.5 bits (99), Expect = 0.086,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHSMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|146260195|gb|ABQ14427.1| beta-lactamase [uncultured soil bacterium]
 gi|146260205|gb|ABQ14430.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.5 bits (99), Expect = 0.086,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|82592679|gb|ABB84515.1| extended-spectrum beta-lactamase TEM-147 [Pseudomonas aeruginosa]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.086,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 63/180 (35%), Gaps = 17/180 (9%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           A IT S N  +      I G ++   F   M +   ++         A    +++    A
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAIPNDERDTTMPA 182


>gi|3281932|emb|CAA76796.1| beta-lactamase class A [Escherichia coli]
 gi|14588995|emb|CAC43180.1| TEM-29 ES-beta-lactamase [Escherichia coli]
 gi|82468437|gb|ABB76656.1| extended-spectrum beta-lactamase TEM-29 [Pseudomonas aeruginosa]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.086,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 63/180 (35%), Gaps = 17/180 (9%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           A IT S N  +      I G ++   F   M +   ++         A    +++    A
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAIPNDERDTTMPA 182


>gi|60115532|ref|YP_209323.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|45758090|gb|AAS76302.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
          Length = 269

 Score = 42.5 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|6137619|pdb|1BT5|A Chain A, Crystal Structure Of The Imipenem Inhibited Tem-1 Beta-
           Lactamase From Escherichia Coli
 gi|16975249|pdb|1JTG|A Chain A, Crystal Structure Of Tem-1 Beta-Lactamase  BETA-Lactamase
           Inhibitor Protein Complex
 gi|16975251|pdb|1JTG|C Chain C, Crystal Structure Of Tem-1 Beta-Lactamase  BETA-Lactamase
           Inhibitor Protein Complex
 gi|157830129|pdb|1AXB|A Chain A, Tem-1 Beta-Lactamase From Escherichia Coli Inhibited With
           An Acylation Transition State Analog
 gi|157830461|pdb|1BTL|A Chain A, Crystal Structure Of Escherichia Coli Tem1 Beta-Lactamase
           At 1.8 Angstroms Resolution
 gi|157833922|pdb|1TEM|A Chain A, 6 Alpha Hydroxymethyl Penicilloic Acid Acylated On The
           Tem- 1 Beta-Lactamase From Escherichia Coli
 gi|209156443|pdb|3C7U|A Chain A, Structural Insight Into The Kinetics And Cp Of
           Interactions Between Tem-1-Lactamase And Blip
 gi|209156445|pdb|3C7U|C Chain C, Structural Insight Into The Kinetics And Cp Of
           Interactions Between Tem-1-Lactamase And Blip
 gi|209156447|pdb|3C7V|A Chain A, Structural Insight Into The Kinetics And Delta-Cp Of
           Interactions Between Tem-1 Beta-Lactamase And Blip
 gi|209156449|pdb|3C7V|C Chain C, Structural Insight Into The Kinetics And Delta-Cp Of
           Interactions Between Tem-1 Beta-Lactamase And Blip
          Length = 263

 Score = 42.5 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 17  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 76

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 77  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 134

Query: 167 KKI 169
            ++
Sbjct: 135 TRL 137


>gi|312132166|ref|YP_003999506.1| beta-lactamase [Leadbetterella byssophila DSM 17132]
 gi|311908712|gb|ADQ19153.1| beta-lactamase [Leadbetterella byssophila DSM 17132]
          Length = 287

 Score = 42.5 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 89/264 (33%), Gaps = 52/264 (19%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASL------TKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +ID+   ++     D+P    S+       K        E +   K  L  QI +     
Sbjct: 41  LIDLKTGEIKQVNGDDPFPLQSVFKFHIAAK------ALEQVDKGKWQLRDQISIEPGEI 94

Query: 112 TQN-PSKLYLKEKT---YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
             +  S +  +  T       +  I  +++ S N         + G        ++   K
Sbjct: 95  YTDLYSPIRDEIGTNLSSMRLDSLIYYMVSLSDNSACDILLRHLGGP-----STVNEYIK 149

Query: 168 KIGMQNTIYKNASGLHD----KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRI 223
           +IG++NT     + L      + Q         +   L+K +    +Y S     +   +
Sbjct: 150 EIGIKNTK-IEVNELTMQSRWEEQYRNISTPLSVAETLKKFY--LREYLSGDMHDFLWAL 206

Query: 224 ITNH----NKLLNKMH--------------NIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           + N     N++   +               N+DGI +G T ++G  I+          V 
Sbjct: 207 MENSPTGANRIRKGLPEGAVLAHKTGTSGRNVDGI-SGATNDAGIIIL----PDGRAYVL 261

Query: 266 VVMGMPTSQERDQKALELITSFLE 289
           VV  +  S+E D+   ELI    E
Sbjct: 262 VVF-VSDSKESDEVNEELIAKIAE 284


>gi|221229328|gb|ABO61017.2| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 301

 Score = 42.5 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 13/101 (12%)

Query: 61  VNKN---QMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +N     ++ G +QDE     S  K  +L +  +     + ++ L+T++P+   A     
Sbjct: 60  LNTGNGRRIGGHRQDERFPMCSTFK--SLLVAHVLSLADAGRVSLDTRVPI---AGKDLL 114

Query: 116 SKLYLK---EKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           S   +         T        +T S N  +    E + G
Sbjct: 115 SYAPVARRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGG 155


>gi|41817|emb|CAA41038.1| beta lactamase TEM6 [Escherichia coli]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 64/180 (35%), Gaps = 17/180 (9%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           A IT S N  +      I G ++   F   M +   ++         A    +++    A
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAIPNDERDTTMPA 182


>gi|291586263|gb|ADE18884.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|291586267|gb|ADE18886.1| TEM-1 beta-lactamase [Salmonella enterica subsp. enterica serovar
           Heidelberg]
 gi|291586269|gb|ADE18887.1| TEM-1 beta-lactamase [Salmonella enterica subsp. enterica serovar
           Heidelberg]
 gi|291586271|gb|ADE18888.1| TEM-1 beta-lactamase [Salmonella enterica subsp. enterica serovar
           Heidelberg]
 gi|291586273|gb|ADE18889.1| TEM-1 beta-lactamase [Salmonella enterica subsp. enterica serovar
           Hadar]
 gi|291586277|gb|ADE18891.1| TEM-1 beta-lactamase [Salmonella enterica subsp. enterica serovar
           Montevideo]
 gi|291586279|gb|ADE18892.1| TEM-1 beta-lactamase [Salmonella enterica subsp. enterica serovar
           Heidelberg]
 gi|291586281|gb|ADE18893.1| TEM-1 beta-lactamase [Salmonella enterica subsp. enterica serovar
           Heidelberg]
 gi|291586283|gb|ADE18894.1| TEM-1 beta-lactamase [Salmonella enterica subsp. enterica serovar
           Heidelberg]
 gi|291586285|gb|ADE18895.1| TEM-1 beta-lactamase [Salmonella enterica subsp. enterica serovar
           Heidelberg]
          Length = 255

 Score = 42.5 bits (99), Expect = 0.088,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|124365493|gb|ABN09740.1| ampicillin resistance protein [Cloning and transformation vector
           pUASTattB]
          Length = 276

 Score = 42.5 bits (99), Expect = 0.088,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 30  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 89

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 90  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 147

Query: 167 KKI 169
            ++
Sbjct: 148 TRL 150


>gi|326378235|gb|ADZ57219.1| extended-spectrum beta-lactamase TEM-63 [Vibrio cholerae O1 biovar
           El Tor]
          Length = 256

 Score = 42.5 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 17/128 (13%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMT---LYI---IFEYLQSKKLHLNTQIP 105
            +   I +D+N  ++    + E R+P     MM+   + +   +   + + +  L  +I 
Sbjct: 24  ARVGYIELDLNSGKILESFRPEERFP-----MMSTFKVLLCGAVLSRVDAGQEQLGRRIH 78

Query: 106 VSKTA-ATQNP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAIL 161
            S+      +P ++ +L +    T  +   A IT S N  +      I G ++   F   
Sbjct: 79  YSQNDLVKYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHN 136

Query: 162 MSNKAKKI 169
           M +   ++
Sbjct: 137 MGDHVTRL 144


>gi|291586261|gb|ADE18883.1| TEM-1 beta-lactamase [Escherichia coli]
          Length = 256

 Score = 42.5 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|46370395|gb|AAS89983.1| beta-lactamase [Proteus mirabilis]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.090,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|228969873|ref|ZP_04130603.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family
          S11 [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228789826|gb|EEM37678.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family
          S11 [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 66

 Score = 42.5 bits (99), Expect = 0.090,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 14 FLTYPYGSIYIQRNIQLMGKI-LFLSIIMI---SMASELHA--KPKYSSIVIDVNKNQMT 67
                  ++ +R I ++  + LF S+ +    + A  + A      S+I+I+ N  ++ 
Sbjct: 1  MEVTEVKGMFCKRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKIL 60

Query: 68 GFKQ 71
            K+
Sbjct: 61 YQKK 64


>gi|6580705|emb|CAB63491.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 303

 Score = 42.5 bits (99), Expect = 0.090,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 31/96 (32%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ++D    +  G +QDE     S  K +    +    + +   L+T++PV       +   
Sbjct: 62  LLDTASGRRIGHRQDERFPMCSTFKSVLAATVLSQAERRPALLDTRVPVRDADLLSHAPV 121

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                    T      A I  S N  +      + G
Sbjct: 122 TRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGG 157


>gi|300790560|ref|YP_003770851.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei
           U32]
 gi|299800074|gb|ADJ50449.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei
           U32]
          Length = 812

 Score = 42.5 bits (99), Expect = 0.091,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 9/97 (9%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLH 99
            ++ A+   A  + +  VID     +        P  PAS TK++T            L 
Sbjct: 424 AVAPAAGNSALGQLTGSVIDPVTGTVLWDHGSSTPVTPASTTKVLTSAAAL-------LS 476

Query: 100 LNTQIPVS-KTAATQNPSKLYLKEKTYFTTEQGILAL 135
           L+  + +S K     +P  + L      T     L  
Sbjct: 477 LDQNLRLSTKIVQGADPGTVILVGGGDTTLTSLPLGT 513


>gi|313885681|ref|ZP_07819430.1| hypothetical protein HMPREF9257_0444 [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619046|gb|EFR30486.1| hypothetical protein HMPREF9257_0444 [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 600

 Score = 42.5 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 16/141 (11%)

Query: 71  QDEPRYPASLTKMMTLYIIFE-YLQSKKLHLN---TQIPVSKTAATQNPSKL--YLKEKT 124
           QD+  +PAS  K+   Y++ E Y Q KK  L+   + + +         + +       +
Sbjct: 336 QDQSFFPASTQKI---YVLGELYHQYKKGILDPYESYVTLYDED-KVPGAGIIQSYPAGS 391

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA-SGLH 183
            F  ++ +  +   S N  +    + + G        ++   + +G+  T       G  
Sbjct: 392 TFAVDELVDLVGIYSDNTAANLLIDTVGGG-----DTINPHMQNLGLVGTSLYGKYYGGE 446

Query: 184 DKNQITTARDQAILGILLRKN 204
           +    TT  D A    LL  N
Sbjct: 447 NTYFATTPSDAAKYFALLYNN 467


>gi|313112825|ref|ZP_07798472.1| hypothetical protein HMPREF9436_00316 [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624895|gb|EFQ08203.1| hypothetical protein HMPREF9436_00316 [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 283

 Score = 42.5 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 17/167 (10%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTK---MMTLYIIFEYLQSKKLHL 100
           +A+EL+      S+ +D  +        DE    AS  K   +  LY+     Q  K  L
Sbjct: 11  IAAELYCYQGKMSVFVDDLQGHTVEVGADEEFETASTIKAFILAALYL---QAQRGKADL 67

Query: 101 NTQIPVSKTAATQNPSKL--YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
             +I   + +   + S +   L        +     +I  S N  +    +++       
Sbjct: 68  AEEITY-EQSQFVDGSGMLRALGVGAKLKVKDTATMMIICSDNIATNMIIDYLG------ 120

Query: 159 AILMSNKAKKIGMQNTIYKNASGLHDKN--QITTARDQAILGILLRK 203
              ++   +++G  +T+  N            TT RD A L   + K
Sbjct: 121 LDTINACIRELGFAHTVLHNPLHFDRYRRLGTTTPRDYAALFTRIAK 167


>gi|221229316|gb|ABO61012.2| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 301

 Score = 42.5 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 13/101 (12%)

Query: 61  VNKN---QMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +N     ++ G +QDE     S  K  +L +  +     + ++ L+T++P+   A     
Sbjct: 60  LNTGNGRRIGGHRQDERFPMCSTFK--SLLVAHVLSLADAGRVSLDTRVPI---AGKDLL 114

Query: 116 SKLYLK---EKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           S   +         T        +T S N  +    E + G
Sbjct: 115 SYAPVARRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGG 155


>gi|16798374|gb|AAL29435.1|AF427129_1 inhibitor-resistant beta-lactamase TEM-83 [Escherichia coli]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMLSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|146260086|gb|ABQ14391.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.5 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIYYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|56311400|emb|CAI29263.1| beta-lactamase [Klebsiella pneumoniae]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMASE---LHAKPK-------YSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A     +  KP           I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKPAEDKLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|2497582|sp|P96465|BLA2_STEMA RecName: Full=Beta-lactamase L2; AltName: Full=Penicillinase;
           Flags: Precursor
 gi|1870143|emb|CAA69869.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 303

 Score = 42.5 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 31/96 (32%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ++D    +  G +QDE     S  K +    +    + +   L+T++PV       +   
Sbjct: 62  LLDTASGRRIGHRQDERFPMCSTFKSVLAATVLSQAERQPALLDTRVPVRDADLLSHAPV 121

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                    T      A I  S N  +      + G
Sbjct: 122 TRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGG 157


>gi|190334222|gb|ACE73899.1| TEM-1 beta-lactamase [synthetic construct]
          Length = 264

 Score = 42.5 bits (99), Expect = 0.094,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 18  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 77

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 78  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 135

Query: 167 KKI 169
            ++
Sbjct: 136 TRL 138


>gi|169797569|ref|YP_001715362.1| beta-lactamase VEB-1 [Acinetobacter baumannii AYE]
 gi|5107037|gb|AAD39933.1|AF133699_5 extended spectrum beta-lactamase [Pseudomonas aeruginosa]
 gi|12024953|gb|AAG45716.1|AF205943_6 extended spectrum beta lactamase [Escherichia coli]
 gi|12655810|gb|AAK00603.1|AF220758_1 extended-spectrum beta-lactamase VEB-1 [Proteus mirabilis]
 gi|3661461|gb|AAC64364.1| beta-lactamase CEF-1 precursor [Pseudomonas aeruginosa]
 gi|4102200|gb|AAD01435.1| extended spectrum beta-lactamase [Escherichia coli]
 gi|45359800|gb|AAS59137.1| extended spectrum beta-lactamase [Pseudomonas aeruginosa]
 gi|84180551|gb|ABC54717.1| VEB-1 extended-spectrum beta-lactamase [Pseudomonas aeruginosa]
 gi|88702679|gb|ABD49192.1| VEB-1 [Achromobacter xylosoxidans]
 gi|90265361|emb|CAJ77043.1| Betalactamase [Acinetobacter baumannii]
 gi|169150496|emb|CAM88398.1| Extended spectrum beta-lactamase VEB-1 [Acinetobacter baumannii
           AYE]
 gi|260677488|gb|ACX47972.1| extended-spectrum beta lactamase [Pseudomonas aeruginosa]
          Length = 299

 Score = 42.5 bits (99), Expect = 0.094,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 86/268 (32%), Gaps = 34/268 (12%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASE---------LHAKPKYSSIVIDVNKNQ--MTGFK 70
           + I + I L+   LF +I+  +  ++         L AK     + I  N N+       
Sbjct: 1   MKIVKRILLVLLSLFFTIVYSNAQTDNLTLKIENVLKAKNARIGVAI-FNSNEKDTLKIN 59

Query: 71  QDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTY 125
            D      S+ K  +     +   +    L    +I ++       T +P K      T 
Sbjct: 60  NDFHFPMQSVMKFPI--ALAVLSEIDKGNLSFEQKIEITPQDLLPKTWSPIKEEFPNGTT 117

Query: 126 FTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
            T EQ +   ++ S N       + I G  S +KF          I              
Sbjct: 118 LTIEQILNYTVSESDNIGCDILLKLIGGTDSVQKFLNANHFTDISIKANEEQMHKDWNTQ 177

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH----NKLLNKMH--NI 237
            +N  T       +  LL   +    +  S + + +  +I+       N+L  ++    I
Sbjct: 178 YQNWATP----TAMNKLLIDTYNNKNQLLSKKSYDFIWKIMRETTTGSNRLKGQLPKNTI 233

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              KTG    SG N   +    D  ++ 
Sbjct: 234 VAHKTGT---SGINNGIAAATNDVGVIT 258


>gi|239909269|gb|ACS32293.1| extended spectrum beta-lactamase CTX-M-74 [Enterobacter cloacae]
          Length = 291

 Score = 42.5 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 3/132 (2%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+           
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 114

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTIYKN 178
                 T  +   A +  S N         + G +K   FA  + ++  ++    T    
Sbjct: 115 HVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTETTLNT 174

Query: 179 ASGLHDKNQITT 190
           A     ++  T 
Sbjct: 175 AIPGDPRDTTTP 186


>gi|202071180|gb|ABO61015.2| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 301

 Score = 42.5 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 13/101 (12%)

Query: 61  VNKN---QMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +N     ++ G +QDE     S  K  +L +  +     + ++ L+T++P+   A     
Sbjct: 60  LNTGNGRRIGGHRQDERFPMCSTFK--SLLVAHVLSLADAGRVSLDTRVPI---AGKDLL 114

Query: 116 SKLYLK---EKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           S   +         T        +T S N  +    E + G
Sbjct: 115 SYAPVARRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGG 155


>gi|2589218|gb|AAB83984.1| beta lactamase [Cloning vector pTM30]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|318062781|ref|ZP_07981502.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Streptomyces sp. SA3_actG]
          Length = 440

 Score = 42.5 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 55 SSIVIDVNKN-QMTGFKQDEPRYPASLTKMMTLYIIFEYL 93
          S+ V+D+    Q+ G        PAS+TK+ T     + L
Sbjct: 52 SASVVDLTSGEQVYGNHAARAATPASVTKIATAVAALDAL 91



 Score = 36.0 bits (82), Expect = 9.4,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 8/80 (10%)

Query: 135 LITRSANDVSTAFGEFIS---GSEKKF---AILMSNKAKKIGM--QNTIYKNASGLHDKN 186
           ++T S ND++       +   G++  F   A  + ++  K+G+  ++T + + SGL   +
Sbjct: 273 MLTYSDNDIAEHLARQTALATGAKADFKGGARAVHDRLDKLGLPVEDTSFHDGSGLDRAD 332

Query: 187 QITTARDQAILGILLRKNFP 206
           ++T     A+L    RK+ P
Sbjct: 333 KLTPGLLTALLAEAARKDQP 352


>gi|307327057|ref|ZP_07606247.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Streptomyces violaceusniger Tu 4113]
 gi|306887355|gb|EFN18351.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Streptomyces violaceusniger Tu 4113]
          Length = 532

 Score = 42.5 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 68/192 (35%), Gaps = 14/192 (7%)

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS---GSEKKFA---I 160
           S+ AA    ++     ++       +  ++T S ND++ A     +   G    FA    
Sbjct: 339 SRKAAK--GARTVASVRSQ-PLSSLVERMLTTSDNDIAEALSRQTALAAGKPASFAGGAK 395

Query: 161 LMSNKAKKIG--MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFR 218
            ++ + +K+G  +      + SGL   + ++      +L     ++ PQ     +     
Sbjct: 396 AVTQRLRKLGVPLSGARIADGSGLDRADHVSAGLLAQVLVRAADRDHPQLRSLLTGLPVA 455

Query: 219 YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPI--VAVVMGMPTSQER 276
             +  +            +   KTG       ++  S+   D  +   A +    T  + 
Sbjct: 456 GFSGTLRTRYAQDAVGRGVVRAKTGTLTGVN-SLAGSVVDADGRLLVFAFMTNGTTDADG 514

Query: 277 DQKALELITSFL 288
            Q+AL+ + S L
Sbjct: 515 AQRALDRMASAL 526


>gi|268318352|ref|YP_003292070.1| beta-lactamase [Rhodothermus marinus DSM 4252]
 gi|262335886|gb|ACY49682.1| beta-lactamase [Rhodothermus marinus DSM 4252]
          Length = 296

 Score = 42.5 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 50/158 (31%), Gaps = 18/158 (11%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYII--FEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           +       ++ D     AS+ K+    ++  +   +   L     + ++        S +
Sbjct: 42  LTTGASVFYRADTLFPTASVIKL--AVLVELYRQYEQGYLSPQDTVVLTAG-RIYPGSGV 98

Query: 119 --YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
             +L      + +   + +I  S N  +    + +          ++   + +G+Q T  
Sbjct: 99  LQHLSVPRVLSLQDAAVLMIILSDNTATNLVFDRLGPHHDARLDSVNATLRSLGLQRTRM 158

Query: 177 KN-ASGLHDKNQ----------ITTARDQAILGILLRK 203
            N   G   +            + T R+   L I + +
Sbjct: 159 LNKPFGFSTRKNTPEARRYGIGMGTPRELMQLMIAMAR 196


>gi|146260202|gb|ABQ14429.1| beta-lactamase [uncultured soil bacterium]
          Length = 268

 Score = 42.5 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 17/128 (13%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMT---LYI---IFEYLQSKKLHLNTQIP 105
            +   I +D+N  ++    + E R+P     MM+   + +   +   + + +  L  +I 
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFP-----MMSTFKVLLRGAVLSRIDAGQEQLGRRIH 86

Query: 106 VSKTAATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAIL 161
            S+    +    ++ +L +    T  +   A IT S N  +      I G ++   F   
Sbjct: 87  YSQNDLVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHN 144

Query: 162 MSNKAKKI 169
           M +   ++
Sbjct: 145 MGDHVTRL 152


>gi|166225923|sp|Q5YXD6|BLAC_NOCFA RecName: Full=Beta-lactamase FAR-1; Flags: Precursor
          Length = 313

 Score = 42.5 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 75/239 (31%), Gaps = 10/239 (4%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAATQNPS 116
            +D     +  ++ DE    AS  K +    +         + +  +  S +   + +P 
Sbjct: 73  AVDTTSGAVVAYRADERFGMASTFKGLACGALLREHPLSSGYFDQVVRYSREEVVSYSPV 132

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNT 174
               +  T  T  +   A IT S N       + + G      F   + ++  ++    T
Sbjct: 133 TET-RVDTGMTVAELCHATITVSDNTAGNQILKLLGGPAGFTAFLRSLGDEVSRLDRWET 191

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
                    +++  T A   A    L+  +     +   +R +   N       +     
Sbjct: 192 ELNEVPPGEERDTTTPAAVAANYRALVLGDVLAEPERAQLRDWLVANTTGDQRIRAGVPA 251

Query: 235 HNIDGIKTGYTRNSGFNIVTSL-RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
               G KTG   + G N V        DPIV  ++       R   A +   + L + T
Sbjct: 252 GWTVGDKTGGGSHGGNNDVAVAWTETGDPIVIALL-----SHRTDPAAKADNALLAEAT 305


>gi|54024277|ref|YP_118519.1| putative class A beta-lactamase [Nocardia farcinica IFM 10152]
 gi|54015785|dbj|BAD57155.1| putative class A beta-lactamase [Nocardia farcinica IFM 10152]
          Length = 297

 Score = 42.5 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 75/239 (31%), Gaps = 10/239 (4%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAATQNPS 116
            +D     +  ++ DE    AS  K +    +         + +  +  S +   + +P 
Sbjct: 57  AVDTTSGAVVAYRADERFGMASTFKGLACGALLREHPLSSGYFDQVVRYSREEVVSYSPV 116

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNT 174
               +  T  T  +   A IT S N       + + G      F   + ++  ++    T
Sbjct: 117 TET-RVDTGMTVAELCHATITVSDNTAGNQILKLLGGPAGFTAFLRSLGDEVSRLDRWET 175

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
                    +++  T A   A    L+  +     +   +R +   N       +     
Sbjct: 176 ELNEVPPGEERDTTTPAAVAANYRALVLGDVLAEPERAQLRDWLVANTTGDQRIRAGVPA 235

Query: 235 HNIDGIKTGYTRNSGFNIVTSL-RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
               G KTG   + G N V        DPIV  ++       R   A +   + L + T
Sbjct: 236 GWTVGDKTGGGSHGGNNDVAVAWTETGDPIVIALL-----SHRTDPAAKADNALLAEAT 289


>gi|302595335|ref|YP_003829050.1| beta-lactamase class A [Escherichia coli]
 gi|302310071|gb|ADL13944.1| TEM-33 [Escherichia coli]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.097,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMLSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|238863894|gb|ACR66223.1| beta-lactamase TEM-1 [Raoultella terrigena]
 gi|238863896|gb|ACR66224.1| beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|238863898|gb|ACR66225.1| beta-lactamase TEM-1 [Escherichia coli]
 gi|238863900|gb|ACR66226.1| beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|238863902|gb|ACR66227.1| beta-lactamase TEM-1 [Escherichia coli]
 gi|238863904|gb|ACR66228.1| beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|238863906|gb|ACR66229.1| beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|238863908|gb|ACR66230.1| beta-lactamase TEM-1 [Escherichia coli]
 gi|238863910|gb|ACR66231.1| beta-lactamase TEM-1 [Raoultella terrigena]
 gi|238863912|gb|ACR66232.1| beta-lactamase TEM-1 [Raoultella terrigena]
 gi|238863914|gb|ACR66233.1| beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|238863916|gb|ACR66234.1| beta-lactamase TEM-1 [Raoultella terrigena]
 gi|238863918|gb|ACR66235.1| beta-lactamase TEM-1 [Escherichia coli]
 gi|238863920|gb|ACR66236.1| beta-lactamase TEM-1 [Escherichia coli]
 gi|238863922|gb|ACR66237.1| beta-lactamase TEM-1 [Raoultella terrigena]
 gi|238863924|gb|ACR66238.1| beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|238863926|gb|ACR66239.1| beta-lactamase TEM-1 [Cronobacter sakazakii]
 gi|238863928|gb|ACR66240.1| beta-lactamase TEM-1 [Escherichia coli]
 gi|238863930|gb|ACR66241.1| beta-lactamase TEM-1 [Escherichia coli]
 gi|238863932|gb|ACR66242.1| beta-lactamase TEM-1 [Escherichia coli]
 gi|238863934|gb|ACR66243.1| beta-lactamase TEM-1 [Escherichia coli]
 gi|238863936|gb|ACR66244.1| beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|238863938|gb|ACR66245.1| beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|238863940|gb|ACR66246.1| beta-lactamase TEM-1 [Escherichia coli]
 gi|238863942|gb|ACR66247.1| beta-lactamase TEM-1 [Escherichia coli]
 gi|238863944|gb|ACR66248.1| beta-lactamase TEM-1 [Escherichia coli]
 gi|238863946|gb|ACR66249.1| beta-lactamase TEM-1 [Escherichia coli]
 gi|238863948|gb|ACR66250.1| beta-lactamase TEM-1 [Escherichia coli]
 gi|238863950|gb|ACR66251.1| beta-lactamase TEM-1 [Escherichia coli]
 gi|238863952|gb|ACR66252.1| beta-lactamase TEM-1 [Klebsiella sp. 49]
 gi|238863954|gb|ACR66253.1| beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|238863956|gb|ACR66254.1| beta-lactamase TEM-1 [Klebsiella sp. 51]
 gi|238863958|gb|ACR66255.1| beta-lactamase TEM-1 [Klebsiella sp. 52]
 gi|238863960|gb|ACR66256.1| beta-lactamase TEM-1 [Escherichia coli]
 gi|238863962|gb|ACR66257.1| beta-lactamase TEM-1 [Klebsiella oxytoca]
 gi|238863964|gb|ACR66258.1| beta-lactamase TEM-1 [Escherichia coli]
 gi|238863966|gb|ACR66259.1| beta-lactamase TEM-1 [Escherichia coli]
 gi|238863968|gb|ACR66260.1| beta-lactamase TEM-1 [Escherichia coli]
          Length = 285

 Score = 42.5 bits (99), Expect = 0.097,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 4   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 63

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 64  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 121

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 122 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 159


>gi|221229301|gb|ABO61005.2| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 301

 Score = 42.5 bits (99), Expect = 0.097,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 13/101 (12%)

Query: 61  VNKN---QMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +N     ++ G +QDE     S  K  +L +  +     + ++ L+T++P+   A     
Sbjct: 60  LNTGNGRRIGGHRQDERFPMCSTFK--SLLVAHVLSLADAGRVSLDTRVPI---AGKDLL 114

Query: 116 SKLYLK---EKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           S   +         T        +T S N  +    E + G
Sbjct: 115 SYAPVARRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGG 155


>gi|146260094|gb|ABQ14394.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.5 bits (99), Expect = 0.097,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHCSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|1524023|emb|CAA64682.1| beta-lactamase [Escherichia coli]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.097,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMLSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|81365640|gb|AAZ14084.2| TEM-146 [Escherichia coli]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.097,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLPDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|208244|gb|AAA72841.1| b-lactamase [unidentified cloning vector]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.097,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|318040302|ref|ZP_07972258.1| Beta-lactamase family protein [Synechococcus sp. CB0101]
          Length = 354

 Score = 42.5 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 53/145 (36%), Gaps = 10/145 (6%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYII--FEYLQSKKLHLNTQIPVSKTA 110
           + S  ++ ++  +    + D     AS  K  T  ++   E L + KL  N  + ++K  
Sbjct: 89  QASGYLLVLDDGRFAQLQPDRAMPAASSIK--TPILLAGLEELDAGKLRWNEPLALTKEV 146

Query: 111 ATQNPSKLYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
                  +  K   T F   +    +I  S N  +    + + G        ++ + + +
Sbjct: 147 IGGGAGWMASKPVGTRFPFWEAATEMIRVSDNSATNLLIKRLGGKVA-----LNARFQAM 201

Query: 170 GMQNTIYKNASGLHDKNQITTARDQ 194
           G+  T+  N     D    T++ D 
Sbjct: 202 GLTATVVNNWLPDLDGTNTTSSLDL 226


>gi|116282558|gb|ABJ97318.1| beta-lactamase [Expression vector pAct26mCherry-F]
 gi|116282561|gb|ABJ97320.1| beta-lactamase [Expression vector pAct26mRFP-F]
 gi|116282565|gb|ABJ97323.1| beta-lactamase [Expression vector pAct26IFN]
 gi|116282569|gb|ABJ97326.1| beta-lactamase [Expression vector pAct26CRFB1]
 gi|116282573|gb|ABJ97329.1| beta-lactamase [Expression vector pAct26CRFB5]
 gi|116282577|gb|ABJ97332.1| beta-lactamase [Expression vector pAct26CRFB6]
 gi|298209298|gb|ADI62667.1| beta-lactamase [Cloning vector Crypto RNAi HP-Frame]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A I+ S N  +      I G ++   F   M +   ++
Sbjct: 123 AAISMSDNTAANLLLTTIGGPKELTAFFHNMGDHVTRL 160


>gi|45268493|gb|AAS55868.1| extended-spectrum beta-lactamase [Pseudomonas aeruginosa]
          Length = 274

 Score = 42.5 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M     ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGEHVTRL 160


>gi|16798376|gb|AAL29436.1|AF427130_1 inhibitor-resistant beta-lactamase TEM-84 [Escherichia coli]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|40737712|gb|AAR89359.1| beta-lactamase TEM-128 [Escherichia coli]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M     ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGEHVTRL 160


>gi|1045659|gb|AAC32891.1| beta-lactamase TEM-28 [Escherichia coli]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 63/180 (35%), Gaps = 17/180 (9%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           A IT S N  +      I G ++   F   M +   ++         A    +++    A
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAIPNDERDTTMPA 182


>gi|331687722|gb|AED88260.1| AmpR [Expression vector XN22_GW]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|291586275|gb|ADE18890.1| TEM-1 beta-lactamase [Salmonella enterica subsp. enterica serovar
           Oranienburg]
          Length = 248

 Score = 42.5 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|284468332|gb|ADB90239.1| beta-lactamase TEM-176 [Escherichia coli]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|261414308|gb|ACX83572.1| extended spectrum beta-lactamase TEM-1 [Morganella morganii]
          Length = 282

 Score = 42.5 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 4   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 63

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 64  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 121

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 122 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 159


>gi|254967198|gb|ACT97652.1| TEM-168 beta-lactamase [mixed culture bacterium PE_gF3SD01_32]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|227462936|gb|ACP18864.1| TEM beta-lactamase [Salmonella enterica subsp. enterica serovar
           Infantis]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMLSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|225698232|gb|ACO07310.1| CMT-type extended-spectrum beta-lactamase [Escherichia coli]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMLSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|213133718|gb|ACJ43258.1| TEM-1 beta-lactamase [Escherichia coli]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|157676818|emb|CAJ32372.1| beta-lactamase [Escherichia coli]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|148357346|gb|ABQ59093.1| TEM beta-lactamase [Acinetobacter baumannii]
          Length = 159

 Score = 42.5 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 17/128 (13%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMT---LYI---IFEYLQSKKLHLNTQIP 105
            +   I +D+N  ++    + E R+P     MM+   + +   +   + + +  L  +I 
Sbjct: 28  ARVGYIELDLNSGKILESFRPEERFP-----MMSTFKVLLCGAVLSRVDAGQEQLGRRIH 82

Query: 106 VSKTAATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAIL 161
            S+    +    ++ +L +    T  +   A IT S N  +      I G ++   F   
Sbjct: 83  YSQNDLVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHN 140

Query: 162 MSNKAKKI 169
           M +   ++
Sbjct: 141 MGDHVTRL 148


>gi|112785106|gb|ABI20743.1| TEM extended-spectrum beta-lactamase [Escherichia coli]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|90110162|gb|ABD90508.1| beta-lactamase BlaTEM-1b [Escherichia coli]
          Length = 284

 Score = 42.5 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|38456216|gb|AAR21068.1| beta-lactamase TEM-129 [Streptococcus pneumoniae]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|37693755|gb|AAQ98890.1| inhibitor-resistant beta-lactamase TEM [Escherichia coli]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|21541783|gb|AAM61952.1|AF516719_1 beta-lactamase TEM-104 [Klebsiella pneumoniae]
 gi|298359550|gb|ADI77428.1| inhibitor-resistant beta-lactamase [Escherichia coli]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|15149330|gb|AAK85245.1| TEM beta-lactamase [Escherichia coli]
 gi|15149334|gb|AAK85247.1| TEM beta-lactamase [Escherichia coli]
 gi|15149336|gb|AAK85248.1| TEM beta-lactamase [Escherichia coli]
 gi|15149338|gb|AAK85249.1| TEM beta-lactamase [Escherichia coli]
 gi|15149340|gb|AAK85250.1| TEM beta-lactamase [Escherichia coli]
 gi|15149344|gb|AAK85252.1| TEM beta-lactamase [Escherichia coli]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|15149326|gb|AAK85243.1| inhibitor resistant TEM beta-lactamase [Escherichia coli]
 gi|15149332|gb|AAK85246.1| inhibitor resistant TEM beta-lactamase [Escherichia coli]
 gi|15149342|gb|AAK85251.1| inhibitor resistant TEM beta-lactamase [Escherichia coli]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|6007799|gb|AAF01046.1|AF188199_1 beta-lactamase variant TEM-70 [Escherichia coli]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|6176542|gb|AAF05611.1|AF190692_1 inhibitor-resistant beta-lactamase TEM-79 [Escherichia coli]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|68165961|gb|AAY87934.1| TEM-1 beta-lactamase [Klebsiella pneumoniae]
          Length = 156

 Score = 42.5 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 17/128 (13%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMT---LYI---IFEYLQSKKLHLNTQIP 105
            +   I +D+N  ++    + E R+P     MM+   + +   +   + + +  L  +I 
Sbjct: 24  ARVGYIELDLNSGKILESFRPEERFP-----MMSTFKVLLCGAVLSRVDAGQEQLGRRIH 78

Query: 106 VSKTAATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAIL 161
            S+    +    ++ +L +    T  +   A IT S N  +      I G ++   F   
Sbjct: 79  YSQNDLVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHN 136

Query: 162 MSNKAKKI 169
           M +   ++
Sbjct: 137 MGDHVTRL 144


>gi|154263799|ref|YP_001409239.1| b-lactamase [Escherichia sp. Sflu5]
 gi|4545267|gb|AAD22468.1|AF121783_2 beta-lactamase [Expression vector pARA13]
 gi|6010636|gb|AAF01199.1|AF179893_1 beta-lactamase [Cloning vector pLM53]
 gi|9022391|gb|AAF82362.1|AF271663_1 beta-lactamase [Cloning vector pLDR9]
 gi|11934666|gb|AAG41769.1|AF187995_1 Bla [Promoter probe vector pJB785TT]
 gi|11934670|gb|AAG41772.1|AF187996_1 Bla [Promoter probe vector pPR9TT]
 gi|13160950|gb|AAK13423.1|AF320510_1 Bla [Promoter probe vector pJB785TTKm1]
 gi|45615|emb|CAA33304.1| unnamed protein product [synthetic construct]
 gi|208142|gb|AAA73059.1| gene bla (Amp-r) [unidentified cloning vector]
 gi|208903|gb|AAA72809.1| beta-lactamase [synthetic construct]
 gi|208989|gb|AAA72356.1| beta-lactamase [unidentified cloning vector]
 gi|209068|gb|AAA72884.1| beta-lactamase [unidentified cloning vector]
 gi|209520|gb|AAA72073.1| beta-lactamase [unidentified cloning vector]
 gi|209527|gb|AAA72077.1| beta-lactamase [unidentified cloning vector]
 gi|1658407|gb|AAB51669.1| beta-lactamase [Cloning vector pJB3]
 gi|2293123|gb|AAB68653.1| beta-lactamase [Cloning vector pJG4-5]
 gi|2343027|gb|AAB67678.1| beta-lactamase [Cloning vector pJB3Cm6]
 gi|2343032|gb|AAB67682.1| beta-lactamase [Cloning vector pJB3Km1]
 gi|2343038|gb|AAB67687.1| beta-lactamase [Cloning vector pJB3Tc20]
 gi|2343043|gb|AAB67691.1| beta-lactamase [Cloning vector pJB321]
 gi|2343049|gb|AAB67696.1| beta-lactamase [Expression vector pJB137]
 gi|2343053|gb|AAB67699.1| beta-lactamase [Expression vector pJB653]
 gi|2576370|gb|AAB82310.1| beta-lactamase [Expression vector pJB655]
 gi|2576374|gb|AAB82313.1| beta-lactamase [Expression vector pJB658]
 gi|2576378|gb|AAB82316.1| beta-lactamase [Expression vector pJB864]
 gi|3320601|gb|AAC83653.1| beta-lactamase [Integrational vector pMUTIN2]
 gi|3892177|gb|AAC78291.1| beta-lactamase [Expression vector pKIL-HIS3]
 gi|4545275|gb|AAD22474.1| beta-lactamase [Expression vector pCY215]
 gi|4585225|gb|AAD25334.1| beta-lactamase [Cloning vector pLM10]
 gi|5326972|emb|CAB46251.1| beta-lactamase [Cloning vector pYanni1]
 gi|5326976|emb|CAB46254.1| beta-lactamase [Cloning vector pYanni2]
 gi|5327021|emb|CAB46257.1| beta-lactamase [Cloning vector pYanni3]
 gi|5327025|emb|CAB46260.1| beta-lactamase [Cloning vector pYanni4]
 gi|5327030|emb|CAB46264.1| beta-lactamase [Cloning vector pYanni5]
 gi|6009636|dbj|BAA85000.1| beta-lactamase [Expression vector pLED-HB]
 gi|6457352|gb|AAF09489.1| beta lactamase [Cloning vector pBgal]
 gi|7649701|dbj|BAA94846.1| beta-lactamase [Retroviral vector pCXbsr]
 gi|7649704|dbj|BAA94848.1| beta-lactamase [Retroviral vector pCXneo]
 gi|9587162|gb|AAF89181.1| beta-lactamase [Cloning vector pBIND]
 gi|10945111|emb|CAC14210.1| beta-lactamase [synthetic construct]
 gi|13623802|dbj|BAB41066.1| beta-lactamhydrolase [Expression vector pLEAD4]
 gi|13623805|dbj|BAB41068.1| beta-lactamhydrolase [Expression vector pLEAD5]
 gi|15149222|gb|AAK85196.1| beta-lactamase [Expression vector pBGH]
 gi|19572270|emb|CAD27361.1| beta-lactamase [Cloning vector pHK11-bla]
 gi|26449190|dbj|BAC41723.1| beta-lactamase [Retroviral vector pCX4bsr]
 gi|26449193|dbj|BAC41725.1| beta-lactamase [Retroviral vector pCX4neo]
 gi|26449196|dbj|BAC41727.1| beta-lactamase [Retroviral vector pCX4pur]
 gi|26449199|dbj|BAC41729.1| beta-lactamase [Retroviral vector pCX4hyg]
 gi|26449202|dbj|BAC41731.1| beta-lactamase [Retroviral vector pCX4bleo]
 gi|26449205|dbj|BAC41733.1| beta-lactamase [Retroviral vector pCX4.1hisD]
 gi|28849078|gb|AAO47697.1| b-lactamase [expression vector pT7-5]
 gi|31745706|gb|AAP57186.1| beta-lactamase [Cosmid vector pRR54]
 gi|37929973|gb|AAP74485.1| Bla [Cloning vector pKZ14]
 gi|37929984|gb|AAP74487.1| Bla [Cloning vector pKZ20]
 gi|37930023|gb|AAP74495.1| Bla [Cloning vector pLZ42]
 gi|41584264|gb|AAS09822.1| beta-lactamase [Cloning vector P-element_XP]
 gi|45826068|gb|AAS77678.1| Bla beta lactamase [Shuttle vector pELS100]
 gi|60396876|gb|AAX19662.1| beta lactamase [Expression vector pT7RS]
 gi|74231242|gb|ABA00718.1| beta-lactamase [Expression vector pBAD322]
 gi|84782118|gb|ABC61530.1| Bla [VEEV replicon vector YFV-C2]
 gi|84782121|gb|ABC61532.1| Bla [VEEV replicon vector YFV-C1]
 gi|84782124|gb|ABC61534.1| Bla [VEEV replicon vector YFV-C2]
 gi|84782127|gb|ABC61536.1| Bla [VEEV replicon vector YFV-C2opt]
 gi|84782130|gb|ABC61538.1| Bla [VEEV replicon vector YFV-C3opt-NS2mut]
 gi|84782133|gb|ABC61540.1| Bla [VEEV replicon vector YFV-C2opt-NS2mut]
 gi|84782136|gb|ABC61542.1| Bla [VEEV replicon vector YFV-C3opt]
 gi|117581999|gb|ABK41444.1| bla [YAC construction vector pRML1]
 gi|118200855|gb|ABK79309.1| ampicillin resistance [Cloning/transgenesis vector pUAST-C5]
 gi|129560437|dbj|BAF48774.1| beta-lactamase [Retroviral vector pCX4gfp*]
 gi|129560440|dbj|BAF48776.1| beta-lactamase [Retroviral vector pCX4redEX*]
 gi|148578111|emb|CAN86931.1| b-lactamase [Escherichia sp. Sflu5]
 gi|158348100|gb|ABW37356.1| beta-lactamase [Cloning vector pEZY45]
 gi|163955598|gb|ABY49797.1| AmpR [Cloning vector pWIZdir]
 gi|169639577|gb|ACA60873.1| beta-lactamase [phagemid cloning vector pA2]
 gi|172053655|gb|ACB70964.1| bla [Cloning vector L071 RRI-Green]
 gi|172053658|gb|ACB70966.1| bla [Cloning vector L087 RRI-Red]
 gi|207091330|gb|ACI23256.1| beta-lactamase [Retroviral expression vector L149]
 gi|270064175|gb|ACZ60056.1| beta-lactamase [shuttle vector pTET15]
 gi|312274862|gb|ADQ57462.1| beta-lactamase [Shuttle vector pKM244]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|6176548|gb|AAF05614.1|AF190695_1 inhibitor-resistant beta-lactamase TEM-77 [Escherichia coli]
 gi|6688989|emb|CAB65358.1| beta-lactamase IRT-18 [Proteus mirabilis]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMLSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|166078586|gb|ABY81271.1| beta-lactamase [Escherichia coli]
          Length = 264

 Score = 42.5 bits (99), Expect = 0.100,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|166078550|gb|ABY81253.1| beta-lactamase [Escherichia coli]
 gi|166078580|gb|ABY81268.1| beta-lactamase [Escherichia coli]
 gi|166078590|gb|ABY81273.1| beta-lactamase [Escherichia coli]
          Length = 274

 Score = 42.5 bits (99), Expect = 0.100,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|145975407|gb|ABQ00181.1| CMT-type beta lactamase [Escherichia coli]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.100,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMLSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|110835657|emb|CAL26907.1| beta-lactamase protein [Acetobacter pasteurianus]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.100,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|157147026|ref|YP_001454345.1| beta-lactam binding protein AmpH [Citrobacter koseri ATCC BAA-895]
 gi|157084231|gb|ABV13909.1| hypothetical protein CKO_02803 [Citrobacter koseri ATCC BAA-895]
          Length = 376

 Score = 42.5 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D     AS+TK+MT  ++ + L    + L+   P+SK A     +++     T  T    
Sbjct: 71  DSVIRIASITKLMTSEMLVKLLDQGTVKLHD--PLSKYA--PPGARVPTYNGTPITLVNL 126


>gi|34099626|gb|AAQ57123.1| beta-lactamase TEM-128 [Acinetobacter baumannii]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|61967136|gb|AAX56615.1| beta-lactamase TEM-141 [Enterobacter cloacae]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVEDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|454853|gb|AAA99042.1| beta-lactamase [unidentified cloning vector]
 gi|454856|gb|AAA99040.1| beta-lactamase [unidentified cloning vector]
          Length = 286

 Score = 42.5 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|10955180|ref|NP_052173.1| beta-lactamase [Neisseria gonorrhoeae]
 gi|18466603|ref|NP_569411.1| beta-lactamase [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|19774241|ref|NP_608310.1| TEM beta-lactamase [Klebsiella pneumoniae]
 gi|27383504|ref|NP_775035.1| BlaTEM1 [Citrobacter freundii]
 gi|38638187|ref|NP_943295.1| beta-lactamase [Escherichia coli]
 gi|41056932|ref|NP_957565.1| hypothetical protein pC15-1a_020 [Escherichia coli]
 gi|58000324|ref|YP_190222.1| beta-lactamase [Escherichia coli]
 gi|58383274|ref|YP_194844.1| beta-lactamase TEM1 [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|58383307|ref|YP_194879.1| beta-lactamase TEM1 [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|133756243|ref|YP_001096393.1| hypothetical protein pLEW517_p68 [Escherichia coli]
 gi|145639564|ref|ZP_01795168.1| beta-lactamase [Haemophilus influenzae PittII]
 gi|152973631|ref|YP_001338671.1| beta-lactamase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|152973829|ref|YP_001338868.1| putative TEM-1 beta-lactamase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|160431621|ref|YP_001551788.1| beta-lactamase TEM precursor [Salmonella enterica subsp. enterica
           serovar Dublin]
 gi|160431829|ref|YP_001551943.1| beta-lactamase TEM precursor [Salmonella enterica subsp. enterica
           serovar Choleraesuis]
 gi|161867939|ref|YP_001598120.1| Bla [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|162960937|ref|YP_001621483.1| beta-lactamase TEM [Haemophilus influenzae 86-028NP]
 gi|169303001|ref|YP_001693174.1| beta-lactamase TEM precursor [Escherichia coli]
 gi|170650838|ref|YP_001740012.1| beta-lactamase TEM [Escherichia coli SMS-3-5]
 gi|187729587|ref|YP_001874868.1| beta-lactamase [Providencia rettgeri]
 gi|187736871|ref|YP_001816609.1| BlaTEM-1 [Escherichia coli 1520]
 gi|189009193|ref|YP_001928075.1| TEM-1 [Klebsiella pneumoniae]
 gi|190570395|ref|YP_001966385.1| BlaTEM beta-lactamase [Salmonella typhimurium]
 gi|194451020|ref|YP_002045448.1| beta-lactamase TEM [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194733784|ref|YP_002112926.1| beta-lactamase TEM [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|209901184|ref|YP_002286965.1| beta-lactamase [Klebsiella pneumoniae]
 gi|209947572|ref|YP_002291069.1| beta-lactamase TEM precursor [Haemophilus influenzae]
 gi|213155647|ref|YP_002317692.1| beta-lactamase TEM [Acinetobacter baumannii AB0057]
 gi|216967802|ref|YP_002333310.1| TEM beta lactamase [Klebsiella pneumoniae]
 gi|218548995|ref|YP_002382786.1| Beta-lactamase TEM [Escherichia fergusonii ATCC 35469]
 gi|218561671|ref|YP_002394583.1| Beta-lactamase TEM precursor (Penicillinase) [Escherichia
           fergusonii ATCC 35469]
 gi|218707900|ref|YP_002415419.1| beta-lactamase [Escherichia coli UMN026]
 gi|226807677|ref|YP_002791371.1| beta-lactamase TEM-1 [Enterobacter cloacae]
 gi|226809987|ref|YP_002791681.1| beta-lactamase TEM-1 [Enterobacter cloacae]
 gi|229847052|ref|ZP_04467158.1| beta-lactamase TEM precursor [Haemophilus influenzae 7P49H1]
 gi|256367543|ref|YP_003108102.1| beta-lactamase TEM-1 precursor [Escherichia coli]
 gi|256367643|ref|YP_003108210.1| beta-lactamase TEM-1 precursor [Escherichia coli]
 gi|260752133|ref|YP_003237648.1| TEM-1 beta-lactamase [Escherichia coli O111:H- str. 11128]
 gi|261888727|ref|YP_003264416.1| beta-lactamase tem precursor [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|284000140|ref|YP_003377827.1| beta-lactamase blaTEM1 [Escherichia coli O26:H-]
 gi|291289025|ref|YP_003517528.1| beta-lactamase [Klebsiella pneumoniae]
 gi|294496707|ref|YP_003560400.1| TEM betalactamase [Klebsiella pneumoniae]
 gi|300818450|ref|ZP_07098659.1| beta-lactamase [Escherichia coli MS 107-1]
 gi|300904914|ref|ZP_07122735.1| beta-lactamase [Escherichia coli MS 84-1]
 gi|300924647|ref|ZP_07140599.1| beta-lactamase [Escherichia coli MS 182-1]
 gi|300939490|ref|ZP_07154151.1| beta-lactamase [Escherichia coli MS 21-1]
 gi|300946710|ref|ZP_07160963.1| beta-lactamase [Escherichia coli MS 116-1]
 gi|300957338|ref|ZP_07169559.1| beta-lactamase [Escherichia coli MS 175-1]
 gi|300973645|ref|ZP_07172310.1| beta-lactamase [Escherichia coli MS 200-1]
 gi|301307411|ref|ZP_07213411.1| beta-lactamase [Escherichia coli MS 124-1]
 gi|301329877|ref|ZP_07222602.1| beta-lactamase [Escherichia coli MS 78-1]
 gi|301594945|ref|ZP_07239953.1| beta-lactamase [Acinetobacter baumannii AB059]
 gi|302595552|ref|YP_003829170.1| beta-lactamase [Escherichia coli]
 gi|302651688|ref|YP_003829069.1| beta-lactamase [Escherichia coli]
 gi|305696861|ref|YP_003864176.1| beta-lactamase tem precursor [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|310286414|ref|YP_003937675.1| beta-lactamase TEM-1 [Escherichia coli]
 gi|317054653|ref|YP_004119720.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|317054667|ref|YP_004119734.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|324120166|ref|YP_004249865.1| TEM beta-lactamase [Klebsiella pneumoniae]
 gi|331680829|ref|ZP_08381469.1| beta-lactamase [Escherichia coli H299]
 gi|332668529|ref|YP_004455307.1| beta-lactamase [Enterobacter sp. W001]
 gi|332875070|ref|ZP_08442907.1| beta-lactamase [Acinetobacter baumannii 6014059]
 gi|50401825|sp|P62593|BLAT_ECOLX RecName: Full=Beta-lactamase TEM; AltName: Full=IRT-4; AltName:
           Full=Penicillinase; AltName: Full=TEM-1; AltName:
           Full=TEM-16/CAZ-7; AltName: Full=TEM-2; AltName:
           Full=TEM-24/CAZ-6; AltName: Full=TEM-3; AltName:
           Full=TEM-4; AltName: Full=TEM-5; AltName: Full=TEM-6;
           AltName: Full=TEM-8/CAZ-2; Flags: Precursor
 gi|50401826|sp|P62594|BLAT_SALTI RecName: Full=Beta-lactamase TEM; AltName: Full=Penicillinase;
           Flags: Precursor
 gi|4959725|gb|AAD34466.1|AF136442_2 beta-lactamase [Cloning vector pScosBC1]
 gi|6007801|gb|AAF01047.1|AF188200_1 beta-lactamase variant TEM-1D [Escherichia coli]
 gi|6010634|gb|AAF01198.1|AF179892_2 beta-lactamase [Cloning vector pLM3]
 gi|10185696|gb|AAG14408.1|AF188331_7 beta-lactamase [Shigella flexneri]
 gi|11036939|gb|AAG27428.1|AF288620_1 beta-lactamase [Cloning vector pdeltaE1sp1A(CMV-GFP)]
 gi|12056589|gb|AAG47953.1|AF308739_2 beta-lactamase [Cloning vector pLM99]
 gi|12056592|gb|AAG47955.1|AF308740_2 beta-lactamase [Cloning vector pLM100]
 gi|12056594|gb|AAG47956.1|AF308741_1 beta-lactamase [Cloning vector pLM101]
 gi|12802445|gb|AAK07886.1|AF316553_1 beta-lactamase [Cloning vector pJH370]
 gi|12802448|gb|AAK07888.1|AF316554_1 beta-lactamase [Cloning vector pJH391]
 gi|12802452|gb|AAK07891.1|AF316555_2 beta-lactamase [Cloning vector pXZ240]
 gi|14165161|gb|AAK55408.1|AF376056_3 beta-lactamase [Cloning vector pTZ110]
 gi|14487951|gb|AAK63814.1|AF383623_5 beta-lactamase [Cloning vector pREX1LC]
 gi|15294080|gb|AAK95217.1|AF403737_2 beta-lactamase [Expression and selection vector pKS336]
 gi|16798378|gb|AAL29437.1|AF427131_1 beta-lactamase TEM1D [Escherichia coli]
 gi|16798380|gb|AAL29438.1|AF427132_1 beta-lactamase TEM1E [Escherichia coli]
 gi|16798382|gb|AAL29439.1|AF427133_1 beta-lactamase TEM1F [Escherichia coli]
 gi|19698432|gb|AAL93144.1|AF479774_8 TEM beta-lactamase [Klebsiella pneumoniae]
 gi|33323513|gb|AAQ07483.1|AF503408_7 Bla [Enterobacteria phage P7]
 gi|43713|emb|CAA23886.1| beta-lactamase [Escherichia coli]
 gi|58031|emb|CAA47409.1| bla gene [synthetic construct]
 gi|58034|emb|CAA47411.1| bla gene from [synthetic construct]
 gi|207765|gb|AAA72797.1| beta-lactamase [unidentified cloning vector]
 gi|208646|gb|AAA99914.1| beta-lactamase [Cloning vector pNO3097]
 gi|208985|gb|AAA73222.1| beta-lactamase [unidentified cloning vector]
 gi|209523|gb|AAA72075.1| beta-lactamase [unidentified cloning vector]
 gi|220934|dbj|BAA00795.1| ampicillin resistance protein [Shuttle vector pHY320PLK]
 gi|220965|dbj|BAA14388.1| Ap resistance protein [synthetic construct]
 gi|408371|gb|AAA67142.1| beta-lactamase [synthetic construct]
 gi|450835|gb|AAA61618.1| beta-lactamase [Cloning vector pKSM710]
 gi|455370|gb|AAB59737.1| beta-lactamase [Cloning vector pBR322]
 gi|456553|gb|AAA73387.1| beta-lactamase [Cosmid vector pIB8]
 gi|535431|gb|AAA73461.1| beta-lactamase [Cloning vector pDO192]
 gi|535434|gb|AAA73463.1| beta-lactamase [Cloning vector pDO193]
 gi|537615|gb|AAA67261.1| ampicillin resistance [Cloning vector pCOS5]
 gi|550456|gb|AAA67264.1| beta-lactamase [Shuttle vector pSP189]
 gi|554543|gb|AAA73052.1| beta-lactamase [unidentified cloning vector]
 gi|559513|emb|CAA86303.1| Beta-Lactamase [Pichia pastoris]
 gi|595689|gb|AAA57075.1| beta-lactamase [unidentified cloning vector]
 gi|595695|gb|AAA57079.1| beta-lactamase [unidentified cloning vector]
 gi|595698|gb|AAA57081.1| beta-lactamase [unidentified cloning vector]
 gi|595701|gb|AAA57083.1| beta-lactamase [unidentified cloning vector]
 gi|595707|gb|AAA57087.1| beta-lactamase [unidentified cloning vector]
 gi|595711|gb|AAA57090.1| beta-lactamase [unidentified cloning vector]
 gi|595715|gb|AAA57093.1| beta-lactamase [unidentified cloning vector]
 gi|595719|gb|AAA57096.1| beta-lactamase [unidentified cloning vector]
 gi|595723|gb|AAA57099.1| beta-lactamase [unidentified cloning vector]
 gi|595727|gb|AAA57102.1| beta-lactamase [unidentified cloning vector]
 gi|595731|gb|AAA57105.1| beta-lactamase [unidentified cloning vector]
 gi|595735|gb|AAA57108.1| beta-lactamase [unidentified cloning vector]
 gi|595739|gb|AAA57111.1| beta-lactamase [unidentified cloning vector]
 gi|595743|gb|AAA57114.1| beta-lactamase [unidentified cloning vector]
 gi|595747|gb|AAC53597.1| beta-lactamase [unidentified cloning vector]
 gi|595750|gb|AAC53599.1| beta-lactamase [unidentified cloning vector]
 gi|595754|gb|AAC53602.1| beta-lactamase [unidentified cloning vector]
 gi|595757|gb|AAA56727.1| beta-lactamase [unidentified cloning vector]
 gi|595760|gb|AAA56729.1| beta-lactamase [unidentified cloning vector]
 gi|595773|gb|AAA56737.1| beta-lactamase [unidentified cloning vector]
 gi|671746|emb|CAA59047.1| beta-lactamase [synthetic construct]
 gi|747954|gb|AAB05650.1| beta-lactamase [Cloning vector pACpET24]
 gi|757531|emb|CAA59965.1| beta-lactamase [synthetic construct]
 gi|808935|emb|CAA23426.1| unnamed protein product [synthetic construct]
 gi|847864|gb|AAC53638.1| beta-lactamase [Cloning vector pZC320]
 gi|885958|gb|AAA70411.1| beta-lactamase [Cloning vector pCG1408]
 gi|915412|gb|AAB39922.1| beta-lactamase [Cloning vector pACT2]
 gi|975874|gb|AAB41333.1| beta-lactamase [Cloning vector pOTSf1Blu]
 gi|1000355|gb|AAA76717.1| beta-lactamase [synthetic construct]
 gi|1004350|gb|AAA77665.1| amp protein [synthetic construct]
 gi|1041779|gb|AAA79995.1| beta-lactamase [Cloning vector pCALn]
 gi|1101784|gb|AAA82948.1| beta-lactamase [Cloning vector pINIIIompA3]
 gi|1101791|gb|AAA82953.1| beta-lactamase [Cloning vector pOR262]
 gi|1117911|gb|AAC53683.1| ampicillin resistance gene [synthetic construct]
 gi|1164903|emb|CAA64064.1| beta-lactamase (pBr323 der.) [synthetic construct]
 gi|1185564|gb|AAB40298.1| beta-lactamase [Cloning vector pDG1661]
 gi|1185570|gb|AAB40303.1| beta-lactamase [Cloning vector pDG1662]
 gi|1185577|gb|AAB40309.1| beta-lactamase [Cloning vector pDG1728]
 gi|1185583|gb|AAB40314.1| beta-lactamase [Cloning vector pDG1730]
 gi|1185592|gb|AAB40322.1| beta-lactamase [Cloning vector pDG1663]
 gi|1185600|gb|AAB40329.1| beta-lactamase [Cloning vector pDG1664]
 gi|1185609|gb|AAB40337.1| beta-lactamase [Cloning vector pDG1729]
 gi|1185617|gb|AAB40344.1| beta-lactamase [Cloning vector pDG1731]
 gi|1197597|gb|AAA93353.1| beta-lactamase [synthetic construct]
 gi|1197853|gb|AAA88822.1| beta-lactamase [Cloning vector pJDC406]
 gi|1236615|gb|AAB01102.1| beta-lactamase [Cloning vector pAM120]
 gi|1381229|gb|AAB05749.1| beta-lactamase [Cloning vector cLHYGpk]
 gi|1399173|gb|AAC97980.1| beta-lactamase [Shigella flexneri]
 gi|1490534|gb|AAC53664.1| beta-lactamase [Cloning vector pBAD-GFPuv]
 gi|1515099|emb|CAA68911.1| beta-lactamase [synthetic construct]
 gi|1515103|emb|CAA68858.1| beta-lactamase [synthetic construct]
 gi|1628644|gb|AAC25435.1| Bla [synthetic construct]
 gi|1633039|gb|AAB17398.1| beta-lactamase [Cloning vector pCALc]
 gi|1633042|gb|AAB17400.1| beta-lactamase [Cloning vector pCALkc]
 gi|1684864|gb|AAB36548.1| beta lactamase [Cloning vector pRNA8]
 gi|1699062|gb|AAB37347.1| beta-lactamase [Cloning vector pGEX-6P-1]
 gi|1699066|gb|AAB37350.1| beta-lactamase [Cloning vector pGEX-6P-2]
 gi|1699070|gb|AAB37353.1| beta-lactamase [Cloning vector pGEX-6P-3]
 gi|1777423|gb|AAB40517.1| beta-lactamase [Neisseria gonorrhoeae]
 gi|1935051|gb|AAB51769.1| beta-lactamase [synthetic construct]
 gi|2190700|gb|AAB64386.1| beta-lactamase [unidentified cloning vector]
 gi|2257573|dbj|BAA21464.1| beta-lactamase [Cloning vector pMW118]
 gi|2257576|dbj|BAA21466.1| beta-lactamase [Cloning vector pMW119]
 gi|2258140|emb|CAA68966.1| beta-lactamase [Plasmid pPV]
 gi|2293120|gb|AAB68651.1| beta-lactamase [unidentified cloning vector]
 gi|2501756|gb|AAC48875.1| beta-lactamase [Cloning vector pAL-Z]
 gi|2501804|gb|AAC53717.1| beta-lactamase [Cloning vector pAL-F]
 gi|2815580|gb|AAB97881.1| beta-lactamase [plasmid pETHIS-1]
 gi|2909369|emb|CAA11557.1| beta lactamase [synthetic construct]
 gi|3002497|gb|AAC08716.1| beta-lactamase [Expression vector pGH/F2.2-163]
 gi|3002502|gb|AAC08720.1| beta-lactamase [Expression vector pGH/F2.79-242]
 gi|3002506|gb|AAC08723.1| beta-lactamase [Expression vector pGH/F2.159-327]
 gi|3002510|gb|AAC08726.1| beta-lactamase [Expression vector pGH/F2.2-242]
 gi|3002514|gb|AAC08729.1| beta-lactamase [Expression vector pGH/F2.79-327]
 gi|3002518|gb|AAC08732.1| beta-lactamase [Expression vector pGH/F2.2-327]
 gi|3328367|gb|AAC26830.1| beta-lactamase [Cloning vector pWEB]
 gi|3907624|gb|AAC79082.1| beta lactamase [Transposon delivery vector pUTkm1]
 gi|3983118|gb|AAC83810.1| beta-lactamase [Expression vector pGST-parallel1]
 gi|4416097|gb|AAD20229.1| beta lactamase [Cloning vector pLXRN]
 gi|4838521|gb|AAD31023.1| beta-lactamase [Cloning vector pFB]
 gi|4838523|gb|AAD31024.1| beta-lactamase [Cloning vector pFBneo]
 gi|4884733|gb|AAD31793.1| beta-lactamase precursor [Neisseria meningitidis]
 gi|5640093|emb|CAB51570.1| beta lactamase [Expression vector pIVET]
 gi|6318570|gb|AAF06953.1| beta-lactamase [Cloning vector YEP46]
 gi|7415880|dbj|BAA93577.1| beta-lactamase [Cloning vector pGFPTA]
 gi|8164199|gb|AAF73968.1| beta-lactamase [Cloning vector pXPG]
 gi|8250021|emb|CAB93485.1| penicillin beta-lactamase [Cloning vector pBRINT-TsCm]
 gi|8250031|emb|CAB93490.1| penicillin beta-lactamase [Cloning vector pBRINT-TsGm]
 gi|8250037|emb|CAB93495.1| penicillin beta-lactamase [Cloning vector pBRINT-TsKm]
 gi|9438225|gb|AAF86568.1| beta-lactamase [Cloning vector pZR80]
 gi|9836697|gb|AAG00264.1| beta-lactamase [synthetic construct]
 gi|9836700|gb|AAG00266.1| beta-lactamase [synthetic construct]
 gi|9836703|gb|AAG00268.1| beta-lactamase [synthetic construct]
 gi|9931484|gb|AAG02190.1| beta-lactamase [Cloning vector pFB-ERV]
 gi|11061049|emb|CAC14439.1| penicillin beta-lactamase [Cloning vector pBRINTs-Cat2]
 gi|11061058|emb|CAC14444.1| penicillin beta-lactamase [Cloning vector pBRINTs-Gen4]
 gi|11061067|emb|CAC14449.1| penicillin beta-lactamase [Cloning vector pBRINTs-Kan2]
 gi|11120588|gb|AAG30933.1| beta lactamase [Cloning vector pCFB]
 gi|11545511|gb|AAG37882.1| ampicillin resistance [Tn10 delivery vector pHV1248]
 gi|11545517|gb|AAG37887.1| ampicillin resistance [Tn10 delivery vector pHV1249]
 gi|12044260|gb|AAG47772.1| beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|16505919|emb|CAD09800.1| beta-lactamase [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|16902303|dbj|BAB71951.1| beta-lactamase TEM-1 [Serratia marcescens]
 gi|18140175|gb|AAL59006.1| beta-lactamase [Expression vector pFHC2102]
 gi|21998668|emb|CAA38428.1| penicillinase TEM-1 [Pseudomonas aeruginosa]
 gi|21998670|emb|CAA38430.1| penicillinase TEM-1 [Pseudomonas aeruginosa]
 gi|25006370|dbj|BAC23912.1| beta-lactamase [Cloning vector pHSG415s]
 gi|25006375|dbj|BAC23916.1| beta-lactamase [Cloning vector pHSG415r]
 gi|27261357|gb|AAN87698.1| BlaTEM1 [Citrobacter freundii]
 gi|27573261|gb|AAO20032.1| beta lactamase [Expression vector pETAT-11]
 gi|27573264|gb|AAO20034.1| beta lactamase [Expression vector pETAT-12]
 gi|27573267|gb|AAO20036.1| beta lactamase [Expression vector pNB-13]
 gi|28971915|dbj|BAC65352.1| beta-lactamase [Cloning vector RCAS-L14]
 gi|29568869|gb|AAO84025.1| beta-lactamase [Expression vector pPYPX88]
 gi|29568882|gb|AAO84034.1| beta-lactamase [Expression vector pPYPX99]
 gi|30230644|gb|AAP20891.1| beta-lactamase TEM-1 [Acinetobacter baumannii]
 gi|30424542|gb|AAO24784.1| ampicillin resistance determinant [Shuttle vector pSK5630]
 gi|30424547|gb|AAO24779.1| ampicillin resistance determinant [Shuttle vector pSK5645]
 gi|30424558|gb|AAO24792.1| ampicillin resistance determinant [Shuttle vector pSK5640]
 gi|31075617|gb|AAP42291.1| beta-lactamase [Cloning vector pHRS-9]
 gi|31096324|gb|AAP43782.1| beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|31339115|dbj|BAC77165.1| beta lactamase [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|33303462|gb|AAQ02307.1| beta-lactamase TEM-1 [Zymomonas mobilis subsp. mobilis CP4]
 gi|34014594|dbj|BAC81970.1| beta-lactamase TEM-1 [Serratia marcescens]
 gi|34398332|gb|AAQ67239.1| Bla [Transposon delivery vector pUT-miniTn5-gfp-tet]
 gi|34495353|gb|AAQ73497.1| TEM-1 beta-lactamase [Enterobacter cloacae]
 gi|37576798|gb|AAQ94057.1| beta-lactamase TEM-1 [Streptococcus pneumoniae]
 gi|37674498|gb|AAQ96920.1| beta-lactamase TEM-1H [Klebsiella pneumoniae]
 gi|37778075|gb|AAR02595.1| beta lactamase [Expression vector pKM260]
 gi|37778077|gb|AAR02596.1| beta lactamase [Expression vector pKM263]
 gi|37778079|gb|AAR02597.1| beta lactamase [Expression vector pKM263-1xHMK]
 gi|37778081|gb|AAR02598.1| beta lactamase [Expression vector pKM263-2xHMK]
 gi|37778083|gb|AAR02599.1| beta lactamase [Expression vector pKM264]
 gi|37778085|gb|AAR02600.1| beta lactamase [Expression vector pKM265]
 gi|37930012|gb|AAP74493.1| Bla [Cloning vector pLZ41]
 gi|37962753|gb|AAR05700.1| beta-lactamase TEM1 [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|37962786|gb|AAR05733.1| beta-lactamase TEM1 [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|37983285|gb|AAR06285.1| beta-lactamase [Escherichia coli]
 gi|38044079|dbj|BAD00176.1| beta-lactamase [Cloning vector pGETS109]
 gi|38606069|gb|AAR25033.1| TEM-1 [Escherichia coli]
 gi|40795478|gb|AAR91458.1| BlaTEM-1b beta-lactamase [Klebsiella pneumoniae]
 gi|42557816|emb|CAD27777.1| ampicillin resistance protein [Cloning vector pTarg1]
 gi|45386992|gb|AAS60101.1| ampicillin resistance protein [Cloning vector pSUP202]
 gi|45558548|gb|AAS68104.1| beta-lactamase TEM-1 [Acinetobacter baumannii]
 gi|48995598|gb|AAT48415.1| ampicillin resistance protein [Cloning vector pSRalphahygro]
 gi|48995601|gb|AAT48417.1| ampicillin resistance protein [Cloning vector pSRalphaneo]
 gi|48995604|gb|AAT48419.1| ampicillin resistance protein [Cloning vector pSRalphablast]
 gi|48995607|gb|AAT48421.1| ampicillin resistance protein [Cloning vector pSRalphapuro]
 gi|48995611|gb|AAT48424.1| ampicillin resistance protein [Cloning vector pSRalphablastC]
 gi|48995615|gb|AAT48427.1| ampicillin resistance protein [Cloning vector pSRalphapuroG]
 gi|48995619|gb|AAT48430.1| ampicillin resistance protein [Cloning vector pSRalphaneoR]
 gi|48995623|gb|AAT48433.1| ampicillin resistance protein [Cloning vector pSRalphahygroY]
 gi|49036569|gb|AAT48881.1| beta-lactamase [Integration vector pDG3661]
 gi|51507314|emb|CAF29065.1| beta-lactamase TEM precursor [Haemophilus influenzae]
 gi|51556863|gb|AAU06201.1| beta-lactamase [Shuttle cosmid vector pHZ1358]
 gi|52699669|gb|AAU86938.1| beta-lactamase TEM-1 [Proteus mirabilis]
 gi|55666552|dbj|BAD69593.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|57903225|gb|AAW58855.1| beta-lactamase [Escherichia coli]
 gi|58200711|gb|AAW66605.1| beta-lactamase TEM-1b [Proteus mirabilis]
 gi|58257619|dbj|BAD88773.1| TEM-1 beta lactamase [Shigella flexneri]
 gi|62550829|emb|CAH64752.1| beta-lactamase [uncultured bacterium]
 gi|63259113|gb|AAY40261.1| Amp [Cloning vector pHR307a]
 gi|66270757|gb|AAY43692.1| Amp5 [Cloning vector pSJS1472]
 gi|66932797|gb|AAY58236.1| beta-lactamase TEM-1b [Escherichia coli]
 gi|69061783|gb|AAY99785.1| AmpR [Insertion vector pWSMK-T]
 gi|71361201|dbj|BAE16359.1| TEM-1 beta-lactamase [Escherichia coli O157:H7]
 gi|73476611|gb|AAZ76377.1| Bla [Cloning vector pSCR001]
 gi|76786452|gb|ABA54979.1| TEM-1 [Pseudomonas putida]
 gi|77455482|gb|ABA86550.1| TEM extended-spectrum beta-lactamase [Escherichia coli]
 gi|77455484|gb|ABA86551.1| TEM extended-spectrum beta-lactamase [Escherichia coli]
 gi|77455486|gb|ABA86552.1| TEM extended-spectrum beta-lactamase [Escherichia coli]
 gi|77455488|gb|ABA86553.1| TEM extended-spectrum beta-lactamase [Escherichia coli]
 gi|77455490|gb|ABA86554.1| TEM extended-spectrum beta-lactamase [Escherichia coli]
 gi|83286862|gb|ABC02197.1| beta-lactamase [Gene replacement vector pLAW344]
 gi|84660251|emb|CAJ56071.1| beta-lactamase [Transconjugation vector pROCKB2]
 gi|84660256|emb|CAJ56075.1| beta-lactamase [Transconjugation vector pROKB1]
 gi|84782112|gb|ABC61527.1| Bla [YFV replicon vector capsid-def]
 gi|84782114|gb|ABC61528.1| Bla [YFV replicon vector FMDV-2A-def]
 gi|84782116|gb|ABC61529.1| Bla [YFV replicon vector prME-def]
 gi|86278331|gb|ABC88416.1| ampicillin resistance marker [Delivery vector pDGIEF]
 gi|91199927|emb|CAJ84437.1| beta-lactamase [Cloning vector pIV10]
 gi|91983324|gb|ABE68729.1| Bla [Integrative promoter probe vector pPP1]
 gi|91983330|gb|ABE68734.1| Bla [Integrative translation probe vector pTP1]
 gi|92429687|gb|ABE77215.1| beta-lactamase [Tn7 delivery vector pGRG36]
 gi|109627376|emb|CAJ84114.1| beta lactamase [Salmonella enterica subsp. enterica serovar
           Infantis]
 gi|110084078|gb|ABG49232.1| hypothetical protein [Escherichia coli]
 gi|110348059|gb|ABG72753.1| Bla [Expression vector mce1]
 gi|112785112|gb|ABI20746.1| TEM extended-spectrum beta-lactamase [Escherichia coli]
 gi|112785114|gb|ABI20747.1| TEM extended-spectrum beta-lactamase [Escherichia coli]
 gi|112785116|gb|ABI20748.1| TEM extended-spectrum beta-lactamase [Escherichia coli]
 gi|112785118|gb|ABI20749.1| TEM extended-spectrum beta-lactamase [Klebsiella pneumoniae]
 gi|114107214|gb|ABI50223.1| beta lactamase TEM-1 [Klebsiella pneumoniae]
 gi|115336278|gb|ABI94361.1| beta-lactamase [Cloning vector pGT2]
 gi|115394180|gb|ABI97038.1| BlaTEM beta-lactamase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|116266308|gb|ABJ91392.1| beta lactamase [Cloning vector pGATA]
 gi|117572166|gb|ABK40466.1| beta-lactamase [Cloning vector EXP4(+)]
 gi|117572169|gb|ABK40468.1| beta-lactamase [Cloning vector EXP5(+)]
 gi|117572172|gb|ABK40470.1| beta-lactamase [Cloning vector pDV-NYFP]
 gi|117572175|gb|ABK40472.1| beta-lactamase [Cloning vector pDV-NTAP]
 gi|117572178|gb|ABK40474.1| beta-lactamase [Cloning vector pDV-CGFP]
 gi|117572181|gb|ABK40476.1| beta-lactamase [Cloning vector pDV-CYFP]
 gi|117572184|gb|ABK40478.1| beta-lactamase [Cloning vector pDV-CTAP]
 gi|117572187|gb|ABK40480.1| beta-lactamase [Cloning vector pDV-NTAP-NYFP]
 gi|117572190|gb|ABK40482.1| beta-lactamase [Cloning vector pDV-NYFP-CTAP]
 gi|117572193|gb|ABK40484.1| beta-lactamase [Cloning vector pDV-CGFP-CTAP]
 gi|117572196|gb|ABK40486.1| beta-lactamase [Cloning vector pDV-CYFP-CTAP]
 gi|117572199|gb|ABK40488.1| beta-lactamase [Cloning vector pDV-NTAP-CGFP]
 gi|117572202|gb|ABK40490.1| beta-lactamase [Cloning vector pDV-NTAP-CYFP]
 gi|117979211|gb|ABK59950.1| Bla [Integrative promoter probe vector pPP2]
 gi|117979217|gb|ABK59955.1| Bla [Integrative promoter probe vector pTP2]
 gi|118123363|dbj|BAF36945.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|118135667|gb|ABK62680.1| beta-lactamase [ORF expression vector pSOX]
 gi|118135670|gb|ABK62682.1| beta-lactamase [ORF selection and expression vector pSOS-X]
 gi|118603543|gb|ABL09148.1| beta-lactamase TEM-1 [Shigella flexneri]
 gi|124053925|gb|ABM89169.1| TEM beta lactamase [Klebsiella pneumoniae]
 gi|124053927|gb|ABM89170.1| TEM beta lactamase [Klebsiella pneumoniae]
 gi|124053929|gb|ABM89171.1| TEM beta lactamase [Klebsiella pneumoniae]
 gi|124053931|gb|ABM89172.1| TEM beta lactamase [Klebsiella oxytoca]
 gi|124053933|gb|ABM89173.1| TEM beta lactamase [Klebsiella pneumoniae]
 gi|124053935|gb|ABM89174.1| TEM beta lactamase [Klebsiella pneumoniae]
 gi|124053937|gb|ABM89175.1| TEM beta lactamase [Klebsiella pneumoniae]
 gi|124053939|gb|ABM89176.1| TEM beta lactamase [Klebsiella pneumoniae]
 gi|124053941|gb|ABM89177.1| TEM beta lactamase [Klebsiella pneumoniae]
 gi|124053943|gb|ABM89178.1| TEM beta lactamase [Klebsiella pneumoniae]
 gi|124053945|gb|ABM89179.1| TEM beta lactamase [Klebsiella pneumoniae]
 gi|124053947|gb|ABM89180.1| TEM beta lactamase [Klebsiella pneumoniae]
 gi|124053949|gb|ABM89181.1| TEM beta lactamase [Klebsiella pneumoniae]
 gi|124053951|gb|ABM89182.1| TEM beta lactamase [Klebsiella pneumoniae]
 gi|124053953|gb|ABM89183.1| TEM beta lactamase [Escherichia coli]
 gi|124053955|gb|ABM89184.1| TEM beta lactamase [Escherichia coli]
 gi|124053957|gb|ABM89185.1| TEM beta lactamase [Escherichia coli]
 gi|124053959|gb|ABM89186.1| TEM beta lactamase [Escherichia coli]
 gi|124053961|gb|ABM89187.1| TEM beta lactamase [Escherichia coli]
 gi|124053963|gb|ABM89188.1| TEM beta lactamase [Escherichia coli]
 gi|124053965|gb|ABM89189.1| TEM beta lactamase [Escherichia coli]
 gi|124053967|gb|ABM89190.1| TEM beta lactamase [Escherichia coli]
 gi|124053969|gb|ABM89191.1| TEM beta lactamase [Escherichia coli]
 gi|124053971|gb|ABM89192.1| TEM beta lactamase [Acinetobacter sp. AC35]
 gi|124053973|gb|ABM89193.1| TEM beta lactamase [Acinetobacter sp. AC18]
 gi|124053975|gb|ABM89194.1| TEM beta lactamase [Acinetobacter sp. AC28]
 gi|124053977|gb|ABM89195.1| TEM beta lactamase [Acinetobacter sp. AC17]
 gi|124053979|gb|ABM89196.1| TEM beta lactamase [Acinetobacter sp. AC78]
 gi|124053981|gb|ABM89197.1| TEM beta lactamase [Acinetobacter sp. AC25]
 gi|124053983|gb|ABM89198.1| TEM beta lactamase [Acinetobacter sp. AC149]
 gi|124053985|gb|ABM89199.1| TEM beta lactamase [Acinetobacter sp. AC23]
 gi|124053987|gb|ABM89200.1| TEM beta lactamase [Proteus sp. PR425]
 gi|124053989|gb|ABM89201.1| TEM beta lactamase [Citrobacter sp. CI925]
 gi|124053991|gb|ABM89202.1| TEM beta lactamase [Citrobacter sp. CI920]
 gi|124053993|gb|ABM89203.1| TEM beta lactamase [Citrobacter sp. CI888]
 gi|124053995|gb|ABM89204.1| TEM beta lactamase [Citrobacter sp. CI174]
 gi|124053997|gb|ABM89205.1| TEM beta lactamase [Citrobacter sp. CI157]
 gi|124053999|gb|ABM89206.1| TEM beta lactamase [Enterobacter sp. EN723]
 gi|124054001|gb|ABM89207.1| TEM beta lactamase [Enterobacter sp. EN959]
 gi|124054003|gb|ABM89208.1| TEM beta lactamase [Enterobacter sp. EN690]
 gi|124054005|gb|ABM89209.1| TEM beta lactamase [Enterobacter sp. EN843]
 gi|124054007|gb|ABM89210.1| TEM beta lactamase [Enterobacter sp. EN893]
 gi|124054009|gb|ABM89211.1| TEM beta lactamase [Enterobacter sp. EN989]
 gi|124054011|gb|ABM89212.1| TEM beta lactamase [Enterobacter sp. EN263]
 gi|124054013|gb|ABM89213.1| TEM beta lactamase [Enterobacter sp. EN702]
 gi|124054015|gb|ABM89214.1| TEM beta lactamase [Enterobacter sp. EN719]
 gi|124054017|gb|ABM89215.1| TEM beta lactamase [Enterobacter sp. EN712]
 gi|124054019|gb|ABM89216.1| TEM beta lactamase [Enterobacter sp. EN232]
 gi|124054021|gb|ABM89217.1| TEM beta lactamase [Enterobacter sp. EN265]
 gi|124054023|gb|ABM89218.1| TEM beta lactamase [Enterobacter sp. EN222]
 gi|124054025|gb|ABM89219.1| TEM beta lactamase [Enterobacter sp. EN729]
 gi|124054027|gb|ABM89220.1| TEM beta lactamase [Enterobacter sp. EN219]
 gi|124054029|gb|ABM89221.1| TEM beta lactamase [Enterobacter sp. EN715]
 gi|124054031|gb|ABM89222.1| TEM beta lactamase [Escherichia coli]
 gi|124054033|gb|ABM89223.1| TEM beta lactamase [Escherichia coli]
 gi|125743015|gb|ABN54712.1| TEM-1b beta-lactamase [Escherichia coli]
 gi|129278841|gb|ABO28847.1| beta-lactamase [Cloning vector pD-GEX1]
 gi|134105576|gb|ABO60928.1| beta-lactamase [Expression vector p15TV-L]
 gi|134105584|gb|ABO60934.1| beta-lactamase [Expression vector pET15-MHL]
 gi|145271355|gb|EDK11268.1| beta-lactamase [Haemophilus influenzae PittII]
 gi|145307015|gb|ABP57195.1| beta-lactamase [Expression vector pCW-LIC]
 gi|145848974|emb|CAM91526.1| tem-1 (tem extended-spectrum beta-lactamase) [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|147724723|gb|ABQ45973.1| beta lactamase [Expression vector pEamTA]
 gi|148524820|dbj|BAF63418.1| beta-lactamase [Escherichia coli]
 gi|150958413|gb|ABR80441.1| beta-lactamase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150958611|gb|ABR80638.1| putative TEM-1 beta-lactamase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|156617159|gb|ABU87507.1| beta-lactamase TEM precursor [Haemophilus influenzae 86-028NP]
 gi|157841130|gb|ABV83132.1| beta-lactamase [Cloning vector pGT3]
 gi|158348095|gb|ABW37352.1| ampicillin resistance [Cloning vector pEZY202]
 gi|159032442|gb|ABW87618.1| beta-lactamase TEM-1 [Escherichia coli]
 gi|159885370|dbj|BAF92974.1| beta-lactamase TEM precursor [Salmonella enterica subsp. enterica
           serovar Choleraesuis]
 gi|159885490|dbj|BAF93093.1| beta-lactamase TEM precursor [Salmonella enterica subsp. enterica
           serovar Dublin]
 gi|161087318|gb|ABX56788.1| Bla [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|162423736|gb|ABX89601.1| AmpR [Cloning vector pFOSAMP]
 gi|164511932|emb|CAO98722.1| TEM-1 B-lactamase [Haemophilus parainfluenzae]
 gi|167613951|gb|ABZ89574.1| beta-lactamase TEM precursor [Escherichia coli]
 gi|167966282|gb|ACA13193.1| beta-lactamase [Psychrobacter maritimus]
 gi|167966284|gb|ACA13194.1| beta-lactamase [Psychrobacter pulmonis]
 gi|169656090|gb|ACA62821.1| beta-lactamase TEM-1 [Escherichia coli]
 gi|170522114|gb|ACB20291.1| beta-lactamase TEM [Escherichia coli SMS-3-5]
 gi|171850734|gb|ACB55473.1| TEM-1 [Klebsiella pneumoniae]
 gi|172051453|emb|CAP07795.1| BlaTEM-1 [Escherichia coli]
 gi|183229405|gb|ACC60255.1| beta-lactamase TEM-1 [Haemophilus influenzae]
 gi|186703055|gb|ACC91766.1| ampicillin resistance protein [Cloning vector pWSTK6]
 gi|186928931|emb|CAQ48345.1| beta-lactamase [Providencia rettgeri]
 gi|192822659|gb|ACF06168.1| beta-lactamase TEM-1b [Klebsiella pneumoniae]
 gi|194409324|gb|ACF69543.1| beta-lactamase TEM [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194709286|gb|ACF88509.1| beta-lactamase TEM [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195954368|gb|ACG58891.1| extended spectrum beta lactamase TEM-1 [Escherichia coli]
 gi|195954370|gb|ACG58892.1| extended spectrum beta lactamase TEM-1 [Klebsiella pneumoniae]
 gi|195954372|gb|ACG58893.1| extended spectrum beta lactamase TEM-1 [Enterobacter sp. O050230]
 gi|195972452|gb|ACG61355.1| beta-lactamase class A [Expression vector pDGICZ]
 gi|198286397|gb|ACH85856.1| TEM-1 [Salmonella enterica subsp. enterica serovar Kentucky]
 gi|198448569|gb|ACH88505.1| beta-lactamase TEM-1 [Helicobacter pylori]
 gi|199600431|emb|CAR66073.1| beta-lactamase [Cloning vector pr8a]
 gi|206601285|gb|ACI16364.1| beta-lactamase [Enterobacter aerogenes]
 gi|208969612|gb|ACI32075.1| beta-lactamase [Escherichia coli]
 gi|209574135|gb|ACI63023.1| beta-lactamase [Klebsiella pneumoniae]
 gi|213054807|gb|ACJ39709.1| beta-lactamase TEM [Acinetobacter baumannii AB0057]
 gi|213133674|gb|ACJ43236.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|213133676|gb|ACJ43237.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|213133678|gb|ACJ43238.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|213133680|gb|ACJ43239.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|213133682|gb|ACJ43240.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|213133684|gb|ACJ43241.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|213133686|gb|ACJ43242.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|213133688|gb|ACJ43243.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|213133690|gb|ACJ43244.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|213133692|gb|ACJ43245.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|213133694|gb|ACJ43246.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|213133696|gb|ACJ43247.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|213133698|gb|ACJ43248.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|213133700|gb|ACJ43249.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|213133702|gb|ACJ43250.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|213133704|gb|ACJ43251.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|213133706|gb|ACJ43252.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|213133708|gb|ACJ43253.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|213133720|gb|ACJ43259.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|213133722|gb|ACJ43260.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|213493243|gb|ACJ47798.1| TEM-1 [Klebsiella pneumoniae]
 gi|215397974|gb|ACJ65251.1| TEM beta lactamase [Klebsiella pneumoniae]
 gi|217427695|gb|ACK44542.1| BlaTEM-1b beta lactamase [Salmonella enterica subsp. enterica
           serovar Kentucky]
 gi|218350185|emb|CAQ86948.1| Beta-lactamase TEM precursor (Penicillinase) [Escherichia
           fergusonii]
 gi|218356536|emb|CAQ89159.1| Beta-lactamase TEM precursor (penicillinase) [Escherichia
           fergusonii ATCC 35469]
 gi|218434997|emb|CAR15942.1| Beta-lactamase TEM precursor (penicillinase) [Escherichia coli
           UMN026]
 gi|218744617|dbj|BAH03496.1| beta-lactamase [Cloning vector pKS145]
 gi|219563188|gb|ACL27954.1| beta-lactamase TEM-1 [Escherichia coli]
 gi|220898278|gb|ACL81499.1| beta-lactamase TEM-1 [Escherichia coli]
 gi|220898283|gb|ACL81503.1| beta-lactamase [Escherichia coli]
 gi|220901861|gb|ACL82963.1| TEM beta lactamase [Klebsiella pneumoniae]
 gi|224579163|gb|ACN58168.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|224979338|gb|ACN72590.1| beta-lactamase TEM-1 [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|225697597|gb|ACO07071.1| beta-lactamase [Klebsiella pneumoniae]
 gi|225697599|gb|ACO07072.1| beta-lactamase [Klebsiella pneumoniae]
 gi|225697601|gb|ACO07073.1| beta-lactamase [Klebsiella pneumoniae]
 gi|226425902|gb|ACO53995.1| beta-lactamase TEM-1 [Enterobacter cloacae]
 gi|226426213|gb|ACO54305.1| beta-lactamase TEM-1 [Enterobacter cloacae]
 gi|227430094|emb|CAX51342.1| TEM-1 [Salmonella enterica subsp. enterica]
 gi|228480580|gb|ACQ41908.1| beta-lactamase TEM-1 precursor [Escherichia coli]
 gi|228480798|gb|ACQ42124.1| beta-lactamase TEM-1 precursor [Escherichia coli]
 gi|229810136|gb|EEP45856.1| beta-lactamase TEM precursor [Haemophilus influenzae 7P49H1]
 gi|237871520|gb|ACR26205.1| Amp [Delivery vector PDGREF]
 gi|241732795|gb|ACS68182.1| beta-lactamase [Expression vector pBJS001]
 gi|254595912|gb|ACT75271.1| beta-lactamase TEM-1 [Acinetobacter baumannii]
 gi|254674505|dbj|BAH86060.1| beta-lactamase [Cloning vector pYT923hyg]
 gi|254966768|gb|ACT97385.1| TEM-1b beta-lactamase [mixed culture bacterium AX_gF1DD01_01]
 gi|254966775|gb|ACT97390.1| TEM-1b beta-lactamase [mixed culture bacterium AX_gF1DD01_04]
 gi|254966791|gb|ACT97401.1| TEM-1b beta-lactamase [mixed culture bacterium AX_gF3SD01_07]
 gi|254966794|gb|ACT97403.1| TEM-1b beta-lactamase [mixed culture bacterium AX_gF3SD01_08]
 gi|254966798|gb|ACT97405.1| TEM-1b beta-lactamase [mixed culture bacterium AX_gF3SD01_10]
 gi|254966806|gb|ACT97410.1| TEM-1b beta-lactamase [mixed culture bacterium AX_gF3SD01_13]
 gi|254966816|gb|ACT97417.1| TEM-1b beta-lactamase [mixed culture bacterium AX_gF3SD01_16]
 gi|254966829|gb|ACT97426.1| TEM-1b beta-lactamase [mixed culture bacterium AX_gF3SD01_22]
 gi|254966852|gb|ACT97441.1| TEM-1b beta-lactamase [mixed culture bacterium AX_gF3SD01_47]
 gi|254966856|gb|ACT97444.1| TEM-1b beta-lactamase [mixed culture bacterium AX_gF3SD01_48]
 gi|254966895|gb|ACT97469.1| TEM-1b beta-lactamase [mixed culture bacterium CA_gF1DD01_02]
 gi|254966899|gb|ACT97471.1| TEM-1b beta-lactamase [mixed culture bacterium CA_gF1DD01_07]
 gi|254966901|gb|ACT97472.1| TEM-1b beta-lactamase [mixed culture bacterium CA_gF1DD01_13]
 gi|254966911|gb|ACT97478.1| TEM-1b beta-lactamase [mixed culture bacterium CA_gF2-3DD01_02]
 gi|254966934|gb|ACT97493.1| TEM-1b beta-lactamase [mixed culture bacterium CA_gF3SD01_17]
 gi|254966937|gb|ACT97495.1| TEM-1b beta-lactamase [mixed culture bacterium CA_gF3SD01_18]
 gi|254966939|gb|ACT97496.1| TEM-1b beta-lactamase [mixed culture bacterium CA_gF3SD01_20]
 gi|254967177|gb|ACT97639.1| TEM-1b beta-lactamase [mixed culture bacterium PE_gF2-3DD01_03]
 gi|254967179|gb|ACT97640.1| TEM-1b beta-lactamase [mixed culture bacterium PE_gF3SD01_02]
 gi|254967190|gb|ACT97647.1| TEM-1b beta-lactamase [mixed culture bacterium PE_gF3SD01_08]
 gi|254967209|gb|ACT97659.1| TEM-1b beta-lactamase [mixed culture bacterium PI_gF3SD01_05]
 gi|254967218|gb|ACT97665.1| TEM-1b beta-lactamase [mixed culture bacterium PI_gF3SD01_19]
 gi|254967220|gb|ACT97666.1| TEM-1b beta-lactamase [mixed culture bacterium PI_gF3SD01_20]
 gi|254967222|gb|ACT97667.1| TEM-1b beta-lactamase [mixed culture bacterium PI_gF3SD01_21]
 gi|255928724|gb|ACU42196.1| AmpR [Insertion vector pUTTnsKm]
 gi|255928729|gb|ACU42200.1| AmpR [Insertion vector pUTTnsCm]
 gi|255928734|gb|ACU42204.1| AmpR [Insertion vector pUTTnsTet]
 gi|256274856|gb|ACU68557.1| beta-lacatamase TEM-1 [Enterobacter cloacae]
 gi|256532072|gb|ACU81180.1| beta-lactamase [Escherichia coli]
 gi|257359587|gb|ACV53161.1| beta lactamase [Expression Vector pETBA]
 gi|257767603|dbj|BAI39097.1| TEM-1 beta-lactamase [Escherichia coli O111:H- str. 11128]
 gi|261857315|emb|CBA11387.1| beta-lactamase tem precursor (ec 3.5.2.6) (tem-1) (tem-2) (tem-3)
           (tem-4) (tem-5) (tem-6) (tem-8/caz-2) (tem-16/caz-7)
           (tem-24/caz-6) (irt-4) (penicillinase) [Salmonella
           enterica subsp. enterica serovar Typhimurium]
 gi|283445080|gb|ADB20424.1| beta-lactamase blaTEM1 [Escherichia coli O26:H-]
 gi|283484059|gb|ADB23349.1| TEM-1, beta-lactamase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|284433182|gb|ADB84921.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|284433237|gb|ADB84976.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|284822044|gb|ADB98019.1| Bla [Donor vector pTKIP-neo]
 gi|284822048|gb|ADB98022.1| Bla [Donor vector pTKIP-cat]
 gi|284822052|gb|ADB98025.1| Bla [Donor vector pTKIP-hygro]
 gi|284822056|gb|ADB98028.1| Bla [Donor vector pTKIP-tri]
 gi|285016601|gb|ADC33150.1| ampicillin resistance protein [Escherichia coli]
 gi|290792156|gb|ADD63482.1| beta-lactamase [Klebsiella pneumoniae]
 gi|290964839|emb|CBH41107.1| TEM-1b [Kluyvera georgiana]
 gi|293339416|gb|ADE43970.1| TEM betalactamase [Klebsiella pneumoniae]
 gi|297185518|gb|ADI24150.1| beta-lactamase TEM-1 [Acinetobacter baumannii]
 gi|298501372|gb|ADI82846.1| beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|298501374|gb|ADI82847.1| beta-lactamase TEM-1 [Enterobacter cloacae]
 gi|300309062|gb|EFJ63582.1| beta-lactamase [Escherichia coli MS 200-1]
 gi|300315908|gb|EFJ65692.1| beta-lactamase [Escherichia coli MS 175-1]
 gi|300403173|gb|EFJ86711.1| beta-lactamase [Escherichia coli MS 84-1]
 gi|300419164|gb|EFK02475.1| beta-lactamase [Escherichia coli MS 182-1]
 gi|300453627|gb|EFK17247.1| beta-lactamase [Escherichia coli MS 116-1]
 gi|300455628|gb|EFK19121.1| beta-lactamase [Escherichia coli MS 21-1]
 gi|300510896|gb|ADK25063.1| OKP beta-lactamase [Serratia marcescens]
 gi|300528854|gb|EFK49916.1| beta-lactamase [Escherichia coli MS 107-1]
 gi|300810987|gb|ADK35768.1| BlaTEM1b beta-lactamase [Klebsiella pneumoniae]
 gi|300837412|gb|EFK65172.1| beta-lactamase [Escherichia coli MS 124-1]
 gi|300844064|gb|EFK71824.1| beta-lactamase [Escherichia coli MS 78-1]
 gi|301168718|emb|CBW28309.1| beta-lactamase tem precursor (ec 3.5.2.6) (penicillinase)
           [Haemophilus influenzae 10810]
 gi|302029399|gb|ADK91430.1| TEM-1 beta-lactamase [Neisseria gonorrhoeae]
 gi|302127789|emb|CBO78202.1| beta-lactamase TEM-1 [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|302310091|gb|ADL13963.1| TEM-1 [Escherichia coli]
 gi|302310193|gb|ADL14064.1| TEM-1 [Escherichia coli]
 gi|302487918|gb|ADL40232.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|302487926|gb|ADL40237.1| TEM-1 [Escherichia coli]
 gi|304376163|dbj|BAJ15325.1| beta-lactamase tem precursor [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|306491151|gb|ADM95145.1| ampicillin resistance determinant [Cloning vector pGFPamy]
 gi|306491159|gb|ADM95151.1| ampicillin resistance determinant [Cloning vector pYFPamy]
 gi|306491167|gb|ADM95157.1| ampicillin resistance determinant [Cloning vector pCFPamy]
 gi|308826743|emb|CBX35997.1| Beta-lactamase TEM-1 [Escherichia coli]
 gi|309750554|gb|ADO80538.1| beta-lactamase [Haemophilus influenzae R2866]
 gi|309774078|gb|ADO95144.1| beta lactamase [Expression vector pPICK9KH1N1HA]
 gi|310686587|gb|ADP02961.1| Bla [Cloning vector pLR3]
 gi|312179387|gb|ADQ39589.1| beta-lactamase [Salmonella enterica subsp. enterica serovar Wien]
 gi|312191347|gb|ADQ43721.1| BLA [Expression vector pIGALBSTP]
 gi|313574897|emb|CBY43986.1| beta-lactamase [Cloning vector pTUY1H]
 gi|313652089|gb|ADR71675.1| AmpR [Retroviral Tet-shRNA expression vector TRMPV-Hygro]
 gi|313652094|gb|ADR71679.1| AmpR [Retroviral Tet-shRNA expression vector TRMPV-Neo]
 gi|313652098|gb|ADR71682.1| AmpR [Retroviral Tet-shRNA expression vector TRMPV-ns]
 gi|313652103|gb|ADR71686.1| AmpR [Retroviral Tet-shRNA expression vector TRMPVIR]
 gi|313652108|gb|ADR71690.1| AmpR [Retroviral Tet-shRNA expression vector TtRMPVIR]
 gi|313652113|gb|ADR71694.1| AmpR [Retroviral Tet-shRNA expression vector TtTMPV-Neo]
 gi|315252274|gb|EFU32242.1| beta-lactamase [Escherichia coli MS 85-1]
 gi|315617947|gb|EFU98542.1| beta-lactamase family protein [Escherichia coli 3431]
 gi|322366624|gb|ADW95392.1| beta-lactamase TEM-1B [Salmonella enterica subsp. enterica serovar
           Rissen]
 gi|323388294|gb|ADX60443.1| TEM beta-lactamase [Klebsiella pneumoniae]
 gi|323516301|gb|ADX90682.1| beta-lactamase TEM [Acinetobacter baumannii TCDC-AB0715]
 gi|323700881|gb|ADY00034.1| class A beta lactamase TEM-1 [Escherichia coli]
 gi|323709054|gb|ADY02540.1| TEM-1 [Escherichia coli]
 gi|323709058|gb|ADY02543.1| TEM-1 [Escherichia coli]
 gi|323903312|gb|ADY11076.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|323958858|gb|EGB54536.1| beta-lactamase [Escherichia coli H489]
 gi|324009181|gb|EGB78400.1| beta-lactamase [Escherichia coli MS 57-2]
 gi|324021202|gb|EGB90421.1| beta-lactamase [Escherichia coli MS 117-3]
 gi|324110968|gb|EGC04958.1| beta-lactamase [Escherichia fergusonii B253]
 gi|324976978|gb|ADY68343.1| beta-lactamase [Cloning vector pBAM1]
 gi|324976983|gb|ADY68347.1| beta-lactamase [Cloning vector pBAM1-GFP]
 gi|327536715|gb|AEA95547.1| beta-lactamase [Salmonella enterica subsp. enterica serovar Dublin]
 gi|330907835|gb|EGH36360.1| beta-lactamase [Escherichia coli AA86]
 gi|331081817|gb|EGI52975.1| beta-lactamase [Escherichia coli H299]
 gi|331687728|gb|AED88265.1| AmpR [Expression vector XN21_GW]
 gi|332015345|gb|AED99557.1| beta-lactamase [Enterobacter sp. W001]
 gi|332144556|dbj|BAK19774.1| TEM-type beta-lactamase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|332144558|dbj|BAK19775.1| TEM-type beta-lactamase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|332736730|gb|EGJ67720.1| beta-lactamase [Acinetobacter baumannii 6014059]
 gi|1089993|prf||2018199A beta lactamase IRT-4
          Length = 286

 Score = 42.5 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|300784629|ref|YP_003764920.1| beta-lactamase class C [Amycolatopsis mediterranei U32]
 gi|299794143|gb|ADJ44518.1| beta-lactamase class C [Amycolatopsis mediterranei U32]
          Length = 271

 Score = 42.2 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 50/160 (31%), Gaps = 24/160 (15%)

Query: 55  SSIVIDVNKNQMTGFKQDEPR--YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           ++  +      + G   D  R    AS++K +T Y     ++   + L+T       A  
Sbjct: 15  AATAVVAADGSVAGRHGDTARKFRLASVSKPLTAYAALIAVEEGVVELDTP------AGP 68

Query: 113 QNPSKLYLKEKTYFTTEQGILALIT---------RSANDVSTAFGEFISGSEKKFAILMS 163
           +  +  +L   T         A+                ++ A  E    S   FA   +
Sbjct: 69  EGSTVRHLLAHTSGLAFDAHKAMAAPGTRRLYSNAGFEQLADALAEH---SGIPFAQYQA 125

Query: 164 NKAKK-IGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
                 +GM +T      G      ++T  D A     L+
Sbjct: 126 EALFAPLGMAST---ALDGSPASGAVSTVDDLAAFAAELQ 162


>gi|208657245|gb|ACI29961.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|208657247|gb|ACI29962.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|208657249|gb|ACI29963.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|208657251|gb|ACI29964.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|208657253|gb|ACI29965.1| TEM-1 beta-lactamase [Escherichia coli]
          Length = 267

 Score = 42.2 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 4   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 63

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 64  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 121

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 122 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 159


>gi|118467441|ref|YP_890415.1| beta-lactamase related protein [Mycobacterium smegmatis str. MC2
           155]
 gi|118168728|gb|ABK69624.1| beta-lactamase related protein [Mycobacterium smegmatis str. MC2
           155]
          Length = 272

 Score = 42.2 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 5/114 (4%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQS 95
           +S      +S L     +S  + D+N  ++      E     AS+ K+    +     + 
Sbjct: 1   MSDFFTRASSMLTDMAAWSVRITDLNTGEILWEHDPERVLKTASVGKI--FLLAEVARRF 58

Query: 96  KKLHLN--TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           +   L+    +  +      +   LYL +      +   L +   S N  +   
Sbjct: 59  ENRTLDPAEIVTAAPEDVVADSGILYLLQGQDLRIDDLCLLIGAVSDNMATNIL 112


>gi|83031783|gb|ABB97007.1| beta-lactamase TEM-55 [Escherichia coli]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|13173096|gb|AAK14293.1|AF324833_1 extended spectrum beta-lactamase VEB-1a [Pseudomonas aeruginosa]
 gi|42563741|gb|AAS20543.1| VEB-1a [Pseudomonas aeruginosa]
 gi|85376210|gb|ABC70297.1| extended spectrum beta-lactamase VEB [Pseudomonas aeruginosa]
 gi|260618473|gb|ACX47363.1| VEB-1a [Acinetobacter johnsonii]
          Length = 299

 Score = 42.2 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 86/268 (32%), Gaps = 34/268 (12%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASE---------LHAKPKYSSIVIDVNKNQ--MTGFK 70
           + I + I L+   LF +++  +  ++         L AK     + I  N N+       
Sbjct: 1   MKIVKRILLVLLSLFFTVVYSNAQTDNLTLKIENVLKAKNARIGVAI-FNSNEKDTLKIN 59

Query: 71  QDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTY 125
            D      S+ K  +     +   +    L    +I ++       T +P K      T 
Sbjct: 60  NDFHFPMQSVMKFPI--ALAVLSEIDKGNLSFEQKIEITPQDLLPKTWSPIKEEFPNGTT 117

Query: 126 FTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
            T EQ +   ++ S N       + I G  S +KF          I              
Sbjct: 118 LTIEQILNYTVSESDNIGCDILLKLIGGTDSVQKFLNANHFTDISIKANEEQMHKDWNTQ 177

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH----NKLLNKMH--NI 237
            +N  T       +  LL   +    +  S + + +  +I+       N+L  ++    I
Sbjct: 178 YQNWATP----TAMNKLLIDTYNNKNQLLSKKSYDFIWKIMRETTTGSNRLKGQLPKNTI 233

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              KTG    SG N   +    D  ++ 
Sbjct: 234 VAHKTGT---SGINNGIAAATNDVGVIT 258


>gi|62738242|pdb|1WE4|A Chain A, Crystal Structure Of Class A Beta-Lactamase Toho-1 G238c
           Mutant
          Length = 262

 Score = 42.2 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 27  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 85

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 86  HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 136


>gi|221229322|gb|ABO61014.2| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 301

 Score = 42.2 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 13/101 (12%)

Query: 61  VNKN---QMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +N     ++ G +QDE     S  K  +L +  +     + ++ L+T++P+   A     
Sbjct: 60  LNTGNGRRIGGHRQDERFPMCSTFK--SLLVAHVLSLADAGRVSLDTRVPI---AGKDLL 114

Query: 116 SKLYLK---EKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           S   +         T        +T S N  +    E + G
Sbjct: 115 SYAPVARRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGG 155


>gi|146260220|gb|ABQ14436.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 42.2 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLFRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTAIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|6273434|emb|CAA74912.2| beta-lactamase class A [Capnocytophaga ochracea]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|22725667|gb|AAN04881.1| beta-lactamase TEM-115 [Klebsiella pneumoniae]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 62/180 (34%), Gaps = 17/180 (9%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +      A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           A IT S N  +      I G ++   F   M +   ++         A    +++    A
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAIPNDERDTTMPA 182


>gi|323710402|gb|ADY02602.1| beta-lactamase blaTEM [Shigella dysenteriae 2a]
          Length = 263

 Score = 42.2 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 17/128 (13%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMT---LYI---IFEYLQSKKLHLNTQIP 105
            +   I +D+N  ++    + E R+P     MM+   + +   +   + + +  L  +I 
Sbjct: 27  ARVGYIELDLNSGKILESFRPEERFP-----MMSTFKVLLCGAVLSRVDAGQEQLGRRIH 81

Query: 106 VSKTAATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAIL 161
            S+    +    ++ +L +    T  +   A IT S N  +      I G ++   F   
Sbjct: 82  YSQNDLVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHN 139

Query: 162 MSNKAKKI 169
           M +   ++
Sbjct: 140 MGDHVTRL 147


>gi|311745180|ref|ZP_07718965.1| beta-lactamase [Algoriphagus sp. PR1]
 gi|126577702|gb|EAZ81922.1| beta-lactamase [Algoriphagus sp. PR1]
          Length = 438

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 14/55 (25%)

Query: 64  NQMTGF--------------KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            ++                 ++D      S+TKM T  ++ + ++  KL L+ ++
Sbjct: 50  GEVLYARSLGFKDIEEGVKLEEDTQFRVGSITKMFTTVLVLQAVEEGKLKLDQKL 104


>gi|46244154|gb|AAP93841.1| beta-lactamase [Serratia marcescens]
          Length = 212

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 14  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 73

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 74  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 131

Query: 167 KKI 169
            ++
Sbjct: 132 TRL 134


>gi|325533970|pdb|3P98|A Chain A, The Crystal Structure Of The Extended Spectrum
           Beta-Lactamase Tem-72 Reveals Inhibition By Citrate
 gi|325533971|pdb|3P98|B Chain B, The Crystal Structure Of The Extended Spectrum
           Beta-Lactamase Tem-72 Reveals Inhibition By Citrate
 gi|6606272|gb|AAF19150.1|AF157413_1 beta-lactamase TEM-72 [Proteus mirabilis]
 gi|6606274|gb|AAF19151.1|AF157553_1 beta-lactamase TEM-72 [Morganella morganii]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|82395024|gb|ABB72432.1| extended spectrum beta-lactamase TEM-144 [Escherichia coli]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|295109224|emb|CBL23177.1| N-acetylmuramoyl-L-alanine amidase [Ruminococcus obeum A2-162]
          Length = 571

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 57/156 (36%), Gaps = 29/156 (18%)

Query: 49  HAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPV 106
            A   ++   +D++ +  +    +     AS+ K  +M    +F+ L            V
Sbjct: 333 AANETWAIAAMDLSDHAYSTVNAEVSMQSASVIKAFIMAA--VFDKL------------V 378

Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNK 165
               AT+  S          + +  +  +IT S ND +      + G + +  A +++  
Sbjct: 379 YADGATEPSSDY------ESSLKSLLTQMITVSDNDAANELARRLGGGDFQNGASVLNEF 432

Query: 166 AKKIGMQNTI----YKNASGLHDKNQITTARDQAIL 197
            ++ G  +T     +  ++     +  T+A D   L
Sbjct: 433 CQEHGYTSTHLGREFLASN--PTDDNYTSASDCCRL 466


>gi|313586335|gb|ADR71220.1| TEM-183 beta-lactamase [Klebsiella pneumoniae]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|166078554|gb|ABY81255.1| beta-lactamase [Escherichia coli]
          Length = 273

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|57232518|gb|AAW47922.1| extended-spectrum beta-lactamase TEM-138 [Salmonella enterica]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|8272638|gb|AAF74292.1|AF264753_1 extended-spectrum beta-lactamase [Escherichia coli]
          Length = 277

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|237846383|gb|ACR22829.1| beta-lactamase TEM-168 [Escherichia coli]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|194022467|gb|ACF32746.1| putative inhibitor-resistant TEM-163 beta-lactamase [Escherichia
           coli]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|166078552|gb|ABY81254.1| beta-lactamase [Escherichia coli]
 gi|166078556|gb|ABY81256.1| beta-lactamase [Escherichia coli]
 gi|166078562|gb|ABY81259.1| beta-lactamase [Escherichia coli]
 gi|166078566|gb|ABY81261.1| beta-lactamase [Escherichia coli]
 gi|166078568|gb|ABY81262.1| beta-lactamase [Escherichia coli]
 gi|166078570|gb|ABY81263.1| beta-lactamase [Escherichia coli]
 gi|166078574|gb|ABY81265.1| beta-lactamase [Escherichia coli]
 gi|166078584|gb|ABY81270.1| beta-lactamase [Escherichia coli]
          Length = 271

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|166157194|emb|CAJ66089.1| beta-lactamase TEM-150 [Escherichia coli]
 gi|208970779|gb|ACI32331.1| extended spectrum beta lactamase TEM-150 [Escherichia coli]
 gi|208970781|gb|ACI32332.1| extended spectrum beta lactamase TEM-150 [Klebsiella pneumoniae]
 gi|208970783|gb|ACI32333.1| extended spectrum beta lactamase TEM-150 [Enterobacter sp.
           SP040079]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPDTLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|161016657|emb|CAO98721.1| TEM-15 B-lactamase [Haemophilus parainfluenzae]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|126734892|ref|ZP_01750638.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Roseobacter sp. CCS2]
 gi|126715447|gb|EBA12312.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Roseobacter sp. CCS2]
          Length = 490

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 57 IVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYLQSK 96
          +V D+   ++    +  + + PAS+TK  T     E L + 
Sbjct: 59 LVADLQTGEVLEDIQSAKAQPPASVTKAFTALYAIEALGAG 99


>gi|110350794|emb|CAL08007.1| TEM-137 beta-lactamase [Shigella sonnei]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|25900617|emb|CAD24670.1| beta-lactamase [Escherichia coli]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|4557168|gb|AAD22539.1|AF104442_1 inhibitor resistant beta lactamase TEM-54 [Escherichia coli]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|75428812|sp|Q48406|BLAT_KLEOX RecName: Full=Beta-lactamase TEM-12; Flags: Precursor
 gi|149169|gb|AAA25053.1| TEM-26B beta-lactamase [Klebsiella oxytoca]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|315364376|pdb|2XR0|A Chain A, Room Temperature X-Ray Structure Of The Perdeuterated
           Toho-1 R274n R276n Double Mutant Beta-Lactamase
          Length = 260

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 25  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 83

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 84  HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 134


>gi|121485913|gb|ABM54870.1| beta-lactamase TEM-160 [Proteus mirabilis]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  P-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMVSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|38492412|pdb|1IYS|A Chain A, Crystal Structure Of Class A Beta-Lactamase Toho-1
          Length = 262

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 27  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 85

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 86  HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 136


>gi|325001885|ref|ZP_08122997.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudonocardia sp. P1]
          Length = 429

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 9/60 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
                 AS+TK +T  ++ +  Q  +L L+   PVS                   T    
Sbjct: 99  ATRVRIASITKTLTAAVVVQLAQEGRLRLDD--PVSAHVPGVPG-------GGDITVADL 149


>gi|150024580|ref|YP_001295406.1| penicillin-binding protein [Flavobacterium psychrophilum JIP02/86]
 gi|149771121|emb|CAL42588.1| Probable penicillin-binding protein [Flavobacterium psychrophilum
           JIP02/86]
          Length = 402

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 15/64 (23%)

Query: 55  SSIVIDVNKNQMTGFK--------------QDEPRYPASLTKMMTLYIIFEYLQSKKLHL 100
            SI+I      +                     P + AS++K++T   +F  + SKK+ L
Sbjct: 80  GSILI-AKNGHIIYENYRGMSNFEEKTPITDQTPLHIASMSKVLTATAVFLLIDSKKITL 138

Query: 101 NTQI 104
           + ++
Sbjct: 139 DQKV 142


>gi|13786975|pdb|1HTZ|A Chain A, Crystal Structure Of Tem52 Beta-Lactamase
 gi|13786976|pdb|1HTZ|B Chain B, Crystal Structure Of Tem52 Beta-Lactamase
 gi|13786977|pdb|1HTZ|C Chain C, Crystal Structure Of Tem52 Beta-Lactamase
 gi|13786978|pdb|1HTZ|D Chain D, Crystal Structure Of Tem52 Beta-Lactamase
 gi|13786979|pdb|1HTZ|E Chain E, Crystal Structure Of Tem52 Beta-Lactamase
 gi|13786980|pdb|1HTZ|F Chain F, Crystal Structure Of Tem52 Beta-Lactamase
          Length = 263

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 17  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 76

Query: 111 -ATQNP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
               +P ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 77  LVKYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 134

Query: 167 KKI 169
            ++
Sbjct: 135 TRL 137


>gi|25010870|ref|NP_735265.1| hypothetical protein gbs0815 [Streptococcus agalactiae NEM316]
 gi|77413583|ref|ZP_00789770.1| Unknown [Streptococcus agalactiae 515]
 gi|23095249|emb|CAD46459.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160349|gb|EAO71473.1| Unknown [Streptococcus agalactiae 515]
          Length = 354

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/102 (11%), Positives = 31/102 (30%), Gaps = 2/102 (1%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
           +   Q       +     S  K+    ++ + +   KL +  +  +++T           
Sbjct: 121 LKTGQRDAMNDTQAMTAGSTYKLPLNMLVVDAVVKGKLSMEERFDITETDYEYIGEHNNY 180

Query: 121 KE--KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
                   + +      +  S N  + A  E I G +  ++ 
Sbjct: 181 VAAFSGAMSIDDMQKYSLVYSENTPAYALAERIGGMDSAYSK 222


>gi|288551658|gb|ACZ02437.2| extended spectrum beta-lactamase TEM-1 [Providencia rettgeri]
          Length = 278

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|21465760|pdb|1JWZ|A Chain A, Crystal Structure Of Tem-64 Beta-Lactamase In Complex With
           A Boronic Acid Inhibitor (105)
          Length = 263

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 17  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 76

Query: 111 -ATQNP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
               +P ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 77  LVKYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 134

Query: 167 KKI 169
            ++
Sbjct: 135 TRL 137


>gi|319744825|gb|EFV97164.1| peptidase family S11 [Streptococcus agalactiae ATCC 13813]
          Length = 354

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/88 (12%), Positives = 27/88 (30%), Gaps = 11/88 (12%)

Query: 84  MTL---------YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKE--KTYFTTEQGI 132
           MT           ++ + +   KL +  +  +++T                   + +   
Sbjct: 135 MTAGSTYKLPLNMLVVDAVVKGKLSMEERFDITETDYEYIGEHNNYVAAFSGAMSIDDMQ 194

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAI 160
              +  S N  + A  E I G +  ++ 
Sbjct: 195 KYSLVYSENTPAYALAERIGGMDSAYSK 222


>gi|296395122|ref|YP_003660006.1| beta-lactamase [Segniliparus rotundus DSM 44985]
 gi|296182269|gb|ADG99175.1| beta-lactamase [Segniliparus rotundus DSM 44985]
          Length = 278

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 74/238 (31%), Gaps = 47/238 (19%)

Query: 41  MISMASELHAKP--KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKK 97
           M +  S L A P    ++ VI      +    + E  +P AS+TK+++ Y     +Q   
Sbjct: 1   MTTALSLLDAWPVDHVAATVI-APSGVVAEHGEVERVFPLASVTKILSGYAALLAVQEGA 59

Query: 98  LHLNTQIPVSKTAATQNPSKL-----------------YLKEKTYFTTEQGILALITRSA 140
           L L+         A    S L                 + +  +        + ++    
Sbjct: 60  LGLDDP-------AGPPGSTLRHLLAHASGLPFDSRVPFARPGSRRIYSNAGVEMLAEQV 112

Query: 141 NDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
              +   G     +E  F          +GM++  +  ++           RD A     
Sbjct: 113 ARET-GIGFHEYTAEAVF--------DPLGMRDVSFTGSAAWGAGAHC---RDLARFAGE 160

Query: 201 L---RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNID----GIKTGYTRNSGFN 251
           L   R   P+     +  +F   + ++  +  +      +     G K+ +   +G +
Sbjct: 161 LLAPRLLAPELLVEATNVQFTGLDGVLVGYGNMKPNDWGLGFELRGAKSPHWTGAGNS 218


>gi|258651088|ref|YP_003200244.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
           anine-endopeptidase [Nakamurella multipartita DSM 44233]
 gi|258554313|gb|ACV77255.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
           anine-endopeptidase [Nakamurella multipartita DSM 44233]
          Length = 466

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 49  HAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMM--TLYII 89
            A  ++S ++ID     +   +    P+ PAS  K++  T  + 
Sbjct: 86  PALAQFSGVIIDPESGTVLWNQNSTAPQLPASTAKLLTGTALLT 129


>gi|18652316|gb|AAL77062.1|AF468003_1 TEM-type beta lactamase [Escherichia coli]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|77408867|ref|ZP_00785593.1| Unknown [Streptococcus agalactiae COH1]
 gi|77172506|gb|EAO75649.1| Unknown [Streptococcus agalactiae COH1]
          Length = 354

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/102 (11%), Positives = 31/102 (30%), Gaps = 2/102 (1%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
           +   Q       +     S  K+    ++ + +   KL +  +  +++T           
Sbjct: 121 LKTGQRDAMNDTQAMTAGSTYKLPLNMLVVDAVVKGKLSMEERFDITETDYEYIGEHNNY 180

Query: 121 KE--KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
                   + +      +  S N  + A  E I G +  ++ 
Sbjct: 181 VAAFSGAMSIDDMQKYSLVYSENTPAYALAERIGGMDSAYSK 222


>gi|194366326|ref|YP_002028936.1| beta-lactamase [Stenotrophomonas maltophilia R551-3]
 gi|194349130|gb|ACF52253.1| beta-lactamase [Stenotrophomonas maltophilia R551-3]
          Length = 478

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 15/60 (25%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYPA--------------SLTKMMTLYIIFEYLQSKKLHLN 101
           ++++  +  Q+        R PA              S+ K++T  ++ + +   K+ L+
Sbjct: 49  AVLV-AHNGQVLYQGASGERDPATHAPATVNSIFAAQSMAKLLTSTLVMQLVDQGKVDLD 107


>gi|15485219|emb|CAC67290.1| beta lactamase TEM-95 [Escherichia coli]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G+++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGAKELTAFLHNMGDHVTRL 160


>gi|120613201|ref|YP_972879.1| D-alanyl-D-alanine carboxypeptidase PBP3 [Acidovorax citrulli
           AAC00-1]
 gi|120591665|gb|ABM35105.1| D-Ala-D-Ala carboxypeptidase PBP3 [Acidovorax citrulli AAC00-1]
          Length = 486

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 53  KYSSIVIDVNKNQ--MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
             + +V D +  Q     ++  EP  PAS+ K++T Y   E L       +T  PV   A
Sbjct: 54  AVAFVVADADGRQPPRLSWRAQEPMNPASVMKLVTTYAALELLGPA-YTWDT--PVYLDA 110

Query: 111 ATQNPS---KLYLK-EKT-YFTTEQGILAL 135
             Q  S    +Y+K         E+  L L
Sbjct: 111 RPQGGSLRGNVYIKGVGDPQLVMERLWLML 140


>gi|18390033|gb|AAL68825.1|AF462635_1 extended-spectrum beta-lactamase CTX-M-5 [Acinetobacter baumannii]
          Length = 276

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 41  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 99

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 100 HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 150


>gi|22536959|ref|NP_687810.1| hypothetical protein SAG0795 [Streptococcus agalactiae 2603V/R]
 gi|76788231|ref|YP_329542.1| hypothetical protein SAK_0920 [Streptococcus agalactiae A909]
 gi|76798550|ref|ZP_00780782.1| conserved hypothetical protein [Streptococcus agalactiae 18RS21]
 gi|77406570|ref|ZP_00783619.1| conserved hypothetical protein [Streptococcus agalactiae H36B]
 gi|77411354|ref|ZP_00787702.1| conserved hypothetical protein [Streptococcus agalactiae CJB111]
 gi|22533813|gb|AAM99682.1|AE014228_3 conserved hypothetical protein [Streptococcus agalactiae 2603V/R]
 gi|76563288|gb|ABA45872.1| conserved hypothetical protein [Streptococcus agalactiae A909]
 gi|76586084|gb|EAO62610.1| conserved hypothetical protein [Streptococcus agalactiae 18RS21]
 gi|77162614|gb|EAO73577.1| conserved hypothetical protein [Streptococcus agalactiae CJB111]
 gi|77174823|gb|EAO77643.1| conserved hypothetical protein [Streptococcus agalactiae H36B]
          Length = 354

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/102 (11%), Positives = 31/102 (30%), Gaps = 2/102 (1%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
           +   Q       +     S  K+    ++ + +   KL +  +  +++T           
Sbjct: 121 LKTGQRDAMNDTQAMTAGSTYKLPLNMLVVDAVVKGKLSMEERFDITETDYEYIGEHNNY 180

Query: 121 KE--KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
                   + +      +  S N  + A  E I G +  ++ 
Sbjct: 181 VAAFSGAMSIDDMQKYSLVYSENTPAYALAERIGGMDSAYSK 222


>gi|89077562|gb|ABD60314.1| beta-lactamase [Escherichia coli]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|495299|gb|AAC36883.1| TEM-26B beta-lactamase [Klebsiella pneumoniae]
          Length = 269

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|66361078|pdb|1YLP|A Chain A, Atomic Resolution Structure Of Ctx-M-27 Beta-Lactamase
          Length = 263

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 58  VID-VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           +ID  +  Q+   + DE     S +K+M    + +  +++K  LN  + + K A   N +
Sbjct: 24  LIDTADNTQVLY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KHADLVNYN 81

Query: 117 KLYLK-EKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            +  K      T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 82  PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 137


>gi|21465758|pdb|1JWP|A Chain A, Structure Of M182t Mutant Of Tem-1 Beta-Lactamase
 gi|22219359|pdb|1M40|A Chain A, Ultra High Resolution Crystal Structure Of Tem-1
 gi|34810264|pdb|1NXY|A Chain A, Crystal Structure Of The Complex Between M182t Mutant Of
           Tem-1 And A Boronic Acid Inhibitor (Sm2)
 gi|34810265|pdb|1NY0|A Chain A, Crystal Structure Of The Complex Between M182t Mutant Of
           Tem-1 And A Boronic Acid Inhibitor (Nbf)
 gi|34810266|pdb|1NYM|A Chain A, Crystal Structure Of The Complex Between M182t Mutant Of
           Tem-1 And A Boronic Acid Inhibitor (Cxb)
 gi|34810267|pdb|1NYY|A Chain A, Crystal Structure Of The Complex Between M182t Mutant Of
           Tem-1 And A Boronic Acid Inhibitor (105)
 gi|47168591|pdb|1PZO|A Chain A, Tem-1 Beta-Lactamase In Complex With A Novel, Core-
           Disrupting, Allosteric Inhibitor
          Length = 263

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 17  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 76

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 77  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 134

Query: 167 KKI 169
            ++
Sbjct: 135 TRL 137


>gi|315364375|pdb|2XQZ|A Chain A, Neutron Structure Of The Perdeuterated Toho-1 R274n R276n
           Double Mutant Beta-Lactamase
          Length = 260

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 25  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 83

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 84  HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 134


>gi|313890785|ref|ZP_07824410.1| conserved hypothetical protein [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313120886|gb|EFR44000.1| conserved hypothetical protein [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 348

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/100 (12%), Positives = 35/100 (35%), Gaps = 2/100 (2%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119
           D+   +       +P    S  K+    ++ + ++  K +L  +  ++ T    +   + 
Sbjct: 113 DLESGETFSMNDRQPMTAGSTYKLPLNMLVVDEVEKGKYNLEQRFDITDTTYEYDREHMA 172

Query: 120 LKEK--TYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
              +     +  +     +  S N  + A  + + G +K 
Sbjct: 173 YVNQFAGAMSISEMQEYSLLYSENTPAYALADRLGGMDKA 212


>gi|307710368|ref|ZP_07646809.1| hypothetical protein SMSK564_1639 [Streptococcus mitis SK564]
 gi|307618960|gb|EFN98095.1| hypothetical protein SMSK564_1639 [Streptococcus mitis SK564]
          Length = 422

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 9/124 (7%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           M SE + K  +S  V  +   +  G  QDE  Y AS+ K+  LY   E +      L+T 
Sbjct: 190 MLSEKYQKDSFSIYVKQLTTGKEAGINQDEKMYAASVLKLPYLYYAQEKINEGLYQLDTT 249

Query: 104 IPVSKTAATQNPSKLYLKEKT--------YFTTEQGILALITRSANDVSTAFGEFISG-S 154
           +           S       +         ++ +  I  +   S N      G ++S  S
Sbjct: 250 VKYVSEVNDFPGSYKPEGSGSLPKKEDNKEYSLKDLITKVSKESDNVAHNILGYYLSNQS 309

Query: 155 EKKF 158
           +  F
Sbjct: 310 DATF 313


>gi|166078576|gb|ABY81266.1| beta-lactamase [Escherichia coli]
          Length = 273

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|166078560|gb|ABY81258.1| beta-lactamase [Escherichia coli]
 gi|218175575|gb|ACK75718.1| beta-lactamase TEM-1 [Escherichia coli]
          Length = 276

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|56181496|gb|AAV83795.1| extended-spectrum beta-lactamase TEM-136 [Klebsiella pneumoniae]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|56463101|gb|AAV91692.1| beta-lactamase TEM [Escherichia coli]
 gi|56463103|gb|AAV91693.1| beta-lactamase TEM [Escherichia coli]
 gi|56463105|gb|AAV91694.1| beta-lactamase TEM [Escherichia coli]
          Length = 221

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|27573660|pdb|1IYO|A Chain A, Toho-1 Beta-Lactamase In Complex With Cefotaxime
 gi|27573661|pdb|1IYP|A Chain A, Toho-1 Beta-Lactamase In Complex With Cephalothin
 gi|27573662|pdb|1IYQ|A Chain A, Toho-1 Beta-Lactamase In Complex With Benzylpenicillin
 gi|157830504|pdb|1BZA|A Chain A, Beta-Lactamase Toho-1 From Escherichia Coli Tuh12191
          Length = 262

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 27  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 85

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 86  HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 136


>gi|326317462|ref|YP_004235134.1| beta-lactamase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374298|gb|ADX46567.1| Beta-lactamase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 300

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 1/97 (1%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-NPS 116
           ++D+   +    + DE     S  K++    +   +   +  L+ +I   K+   + +P+
Sbjct: 50  LLDMATGRQRAHRGDERFPLCSTFKLVLAAHVLRRVDQGQERLDRRITYGKSDLMEYSPA 109

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                     T EQ   A +T S N  +        G
Sbjct: 110 TERHVGGDGMTVEQLCEAAVTLSDNTAANLLLGTQGG 146


>gi|166078564|gb|ABY81260.1| beta-lactamase [Escherichia coli]
 gi|166078572|gb|ABY81264.1| beta-lactamase [Escherichia coli]
          Length = 272

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|291452219|ref|ZP_06591609.1| LOW QUALITY PROTEIN: D-alanyl-D-alanine carboxypeptidase
           [Streptomyces albus J1074]
 gi|291355168|gb|EFE82070.1| LOW QUALITY PROTEIN: D-alanyl-D-alanine carboxypeptidase
           [Streptomyces albus J1074]
          Length = 277

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 10/110 (9%)

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS---GSEKKFAILM 162
           V + AAT    K  L +         +  ++T S ND++ A     +   G++  FA   
Sbjct: 81  VREAAATDQAEK--LADVRSAPLSALVERMLTHSDNDIAEALARQTALAAGAKADFAGAE 138

Query: 163 SNKAKKIG-----MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQ 207
               + +G     +    + + SGL   +++T     ++L      + P+
Sbjct: 139 RETRRALGRLGLPLDGARFADGSGLDRADRVTARLLTSLLARAAHTDHPE 188


>gi|44194076|gb|AAS46844.1| TEM-1 beta-lactamase [Serratia marcescens]
 gi|44194080|gb|AAS46846.1| TEM-1 beta-lactamase [Serratia marcescens]
 gi|44194082|gb|AAS46847.1| TEM-1 beta-lactamase [Serratia marcescens]
 gi|44194084|gb|AAS46848.1| TEM-1 beta-lactamase [Serratia marcescens]
          Length = 281

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|44194078|gb|AAS46845.1| TEM-1 beta-lactamase [Serratia marcescens]
          Length = 282

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|81365635|gb|AAZ14083.2| TEM-145 [Escherichia coli]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|24431109|gb|AAN61404.1|AF466526_3 extended-spectrum beta-lactamase TEM-21 [Pseudomonas aeruginosa]
 gi|2970695|gb|AAC06040.1| extended spectrum beta-lactamase TEM-21 [Morganella morganii]
 gi|3282026|emb|CAA76794.1| beta-lactamase class A [Klebsiella pneumoniae]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLRNMGDHVTRL 160


>gi|254966909|gb|ACT97477.1| TEM-1b beta-lactamase [mixed culture bacterium CA_gF1DD01_19]
          Length = 285

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|166078558|gb|ABY81257.1| beta-lactamase [Escherichia coli]
          Length = 272

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|6457305|gb|AAF09467.1|AF179627_2 Amp [Expression vector pCENEX645]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 40  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLFRIDAGQEQLGRRIHYSQND 99

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 100 LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 157

Query: 167 KKI 169
            ++
Sbjct: 158 TRL 160


>gi|255261596|ref|ZP_05340938.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Thalassiobium sp. R2A62]
 gi|255103931|gb|EET46605.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Thalassiobium sp. R2A62]
          Length = 504

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 54  YSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYL 93
            + ++ D    ++     ++  + PAS+ K +T     + L
Sbjct: 69  VAFMLADAETGEVLEANAEQIAQPPASVAKAVTALYALDQL 109


>gi|254839213|pdb|2ZQ8|A Chain A, Apo Structure Of Class A Beta-Lactamase Toho-1 R274nR276N
           Double Mutant
          Length = 262

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 27  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 85

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 86  HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 136


>gi|114842972|gb|ABI81768.1| beta-lactamase TEM-157 [Enterobacter cloacae]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S++   +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQSDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|120404501|ref|YP_954330.1| peptidoglycan glycosyltransferase [Mycobacterium vanbaalenii PYR-1]
 gi|119957319|gb|ABM14324.1| Peptidoglycan glycosyltransferase [Mycobacterium vanbaalenii PYR-1]
          Length = 652

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 40/162 (24%), Gaps = 55/162 (33%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPA----------------------- 78
           + MA +       S++V+D    ++     D    PA                       
Sbjct: 299 VQMAKDASGAKNASAVVLDAKTGEVLAMSNDNTFNPAQDLSRQENRQLGNLPVSSPFEPG 358

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI-LALIT 137
           S+ KM+T   + E      L    ++     +                T        ++ 
Sbjct: 359 SVNKMITAAAVIEN----NLTTPDEVLQVPGSINMGG----------VTVRDAWNHGVMP 404

Query: 138 R--------SANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
                    S+N  +    + +              A+ + M
Sbjct: 405 YTTTGVFGKSSNVGTLMLAQRLG---------PERYAEMLKM 437


>gi|301017556|ref|ZP_07182232.1| beta-lactamase [Escherichia coli MS 69-1]
 gi|3851588|gb|AAC72362.1| extended-spectrum beta-lactamase TEM-10 [Morganella morganii]
 gi|300400144|gb|EFJ83682.1| beta-lactamase [Escherichia coli MS 69-1]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|20150074|pdb|1HZO|A Chain A, Structure Of Class A Cephalosporinase From Proteus
           Vulgaris K1
 gi|20150075|pdb|1HZO|B Chain B, Structure Of Class A Cephalosporinase From Proteus
           Vulgaris K1
          Length = 271

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 77/211 (36%), Gaps = 8/211 (3%)

Query: 62  NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV--SKTAATQNPSKLY 119
           + +Q+T  + +E    AS +K+M +  + +  + +   L+  I +  S   A    ++ +
Sbjct: 30  DNSQITY-RGEERFAMASTSKVMAVAAVLKASEKQAGLLDKNITIKKSDLVAYSPITEKH 88

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYK 177
           L      T  +   A +  S N       +++ G     +FA  +++   ++  +     
Sbjct: 89  LTTG--MTLAELSAATLQYSDNTAMNKILDYLGGPAKVTQFARSINDVTYRLDRKEPELN 146

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNI 237
            A     ++  +       L  L   +     +   +  +   N    N  K     H +
Sbjct: 147 TAIHGDPRDTTSPIAMAKSLQALTLGDALGQSQRQQLVTWLKGNTTGDNSIKAGLPKHWV 206

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDD-PIVAVV 267
            G KTG       N +  +  ++  P++ VV
Sbjct: 207 VGDKTGSGDYGTTNDIAVIWPENHAPLILVV 237


>gi|166078578|gb|ABY81267.1| beta-lactamase [Escherichia coli]
 gi|166078582|gb|ABY81269.1| beta-lactamase [Escherichia coli]
          Length = 268

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|13676302|gb|AAK33121.1| extended spectrum beta-lactamase [Klebsiella pneumoniae]
          Length = 277

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +      A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|71273528|emb|CAJ13634.1| TEM-1 beta-lactamase [Escherichia coli]
 gi|166078588|gb|ABY81272.1| beta-lactamase [Escherichia coli]
          Length = 269

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|322515784|ref|ZP_08068729.1| beta-lactamase [Streptococcus vestibularis ATCC 49124]
 gi|322125746|gb|EFX97064.1| beta-lactamase [Streptococcus vestibularis ATCC 49124]
          Length = 430

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT------AATQN 114
           ++ +++     ++  Y AS+ K+  LY   E L  KKL L+ +   +        A   +
Sbjct: 215 LDTDRIAAINDEKSMYAASVAKLGVLYYAQERLSQKKLSLSDEYQYTSAVNGFPGAYDPD 274

Query: 115 PSK--LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
            S     + +   ++ E  + A+   S N  +   G +++     
Sbjct: 275 GSGKISKMPDDKNYSLENLLKAVAQNSDNVATNILGYYVANQYDN 319


>gi|209974342|gb|ACJ04051.1| extended-spectrum beta-lactamase TEM-167 [Escherichia coli]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +      A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|15624079|gb|AAL03985.1|AF203816_1 extended-spectrum beta-lactamase TEM-71 [Klebsiella pneumoniae]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|552996|gb|AAA32208.1| ampicillinase [Enterobacteria phage f1]
          Length = 225

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|322412118|gb|EFY03026.1| hypothetical protein SDD27957_06970 [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 221

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 11/85 (12%)

Query: 84  MTL---------YIIFEYLQSKKLHLNTQIPVS--KTAATQNPSKLYLKEKTYFTTEQGI 132
           MT           ++ + ++  KL L  +  ++       Q  +    +     +     
Sbjct: 1   MTAGSTYKLPLNMLVVDEVKKGKLTLTERFDITGTDYEYEQEHNTYVAQFNGAMSIPDMQ 60

Query: 133 LALITRSANDVSTAFGEFISGSEKK 157
              +  S N  + A  E + G  K 
Sbjct: 61  EYSLVYSENTPAYALAERLGGMNKA 85


>gi|75674549|ref|YP_316970.1| beta-lactamase [Nitrobacter winogradskyi Nb-255]
 gi|74419419|gb|ABA03618.1| beta-lactamase [Nitrobacter winogradskyi Nb-255]
          Length = 296

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 5/116 (4%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP 115
           ++D    Q  G + DEP    S  K++    + + + + K  L  +I  ++    A    
Sbjct: 55  LLDAGTGQHVGHRMDEPFPMCSTFKVLAAGALLQGVDAGKEDLARRIYFNEADLVAHSPE 114

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE--KKFAILMSNKAKKI 169
           ++ ++   T  T  +   A IT S N         I G +    FA  + ++  ++
Sbjct: 115 TRKHVGP-TGMTVAELCKAAITLSDNTAGNLLLASIGGPQGLTAFARRLGDEVTRL 169


>gi|18482488|gb|AAL68923.1| TEM-type beta-lactamase [Klebsiella pneumoniae]
 gi|283855865|gb|ADB45252.1| BlaTEM-1 [Serratia marcescens]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +      A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|42540511|gb|AAS19171.1| extended spectrum beta-lactamase TEM-133 [Klebsiella pneumoniae]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +      A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|86438858|emb|CAJ70627.1| mutant amyA-blaM fusion protein [unidentified expression vector]
          Length = 455

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 209 ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 268

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 269 LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 326

Query: 167 KKI 169
            ++
Sbjct: 327 TRL 329


>gi|229494573|ref|ZP_04388336.1| beta-lactamase family protein/peptidase S9 domain protein
           [Rhodococcus erythropolis SK121]
 gi|229318935|gb|EEN84793.1| beta-lactamase family protein/peptidase S9 domain protein
           [Rhodococcus erythropolis SK121]
          Length = 1122

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           VI+ +         D      S+TK+ T  ++ + +    L L+  +
Sbjct: 708 VINADTG--VEVSTDSLFQIGSITKVWTAMLVMQLVDEGLLDLDATV 752


>gi|226304510|ref|YP_002764468.1| S9 family peptidase [Rhodococcus erythropolis PR4]
 gi|226183625|dbj|BAH31729.1| putative S9 family peptidase [Rhodococcus erythropolis PR4]
          Length = 1122

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           VI+ +         D      S+TK+ T  ++ + +    L L+  +
Sbjct: 708 VINADTG--VEVSTDSLFQIGSITKVWTAMLVMQLVDEGLLDLDATV 752


>gi|224552432|gb|ACN54552.1| extended-spectrum beta-lactamase CTX-M-2 [Escherichia coli]
          Length = 271

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 47  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 105

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 106 HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 156


>gi|4557166|gb|AAD22538.1|AF104441_1 extended spectrum beta-lactamase TEM-53 [Klebsiella pneumoniae]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +      A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|29650764|gb|AAO85882.1| beta-lactamase TEM-120 [Klebsiella oxytoca]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +      A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|484096|gb|AAB59975.1| extended-spectrum beta-lactamase TEM-10 [Klebsiella oxytoca]
          Length = 269

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|56548638|gb|AAV93320.1| CTX-M-2-like beta-lactamase precursor [Kluyvera intermedia]
          Length = 276

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 50  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 108

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 109 HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 159


>gi|282866366|ref|ZP_06275411.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Streptomyces sp. ACTE]
 gi|282558762|gb|EFB64319.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Streptomyces sp. ACTE]
          Length = 494

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 14/104 (13%)

Query: 55  SSIVIDVNKN-QMTGFKQDEPRYPASLTKMMTLYIIFEYL-QSKKLHLNTQIPVSKTAAT 112
           ++ V+D     Q+       P  PAS  K+ T       L    ++   T + VSK + T
Sbjct: 135 AAAVVDTATGEQVYAHGATTPMTPASTVKIATSVAALSALGPDHRIP--TTVRVSKDSGT 192

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
                + L      T ++  L  +     D + A  +   G+EK
Sbjct: 193 -----VTLVGGGDPTLDRSALRALAT---DTARALRD--GGTEK 226


>gi|291586287|gb|ADE18896.1| TEM-1 beta-lactamase [Salmonella enterica subsp. enterica serovar
           Heidelberg]
          Length = 215

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|223006551|emb|CAQ00120.1| beta-lactamase [Proteus mirabilis]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   + +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNIGDHVTRL 160


>gi|2765067|emb|CAA71322.1| ES-beta-lactamase [Klebsiella pneumoniae]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|12018137|gb|AAG45415.1| TEM-derived extended spectrum beta-lactamase [Escherichia coli]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|291586291|gb|ADE18898.1| TEM-1 beta-lactamase [Salmonella enterica subsp. enterica serovar
           Montevideo]
          Length = 202

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|238893299|ref|YP_002918033.1| beta-lactam binding protein AmpH [Klebsiella pneumoniae NTUH-K2044]
 gi|238545615|dbj|BAH61966.1| beta-lactamase/D-ala carboxypeptidase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 386

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-------------- 69
           ++R++ +   +   S   +  A++    P ++S V+D   N +                 
Sbjct: 1   MKRSLLIFAALCAASWTSV-QAAQPTVDPVFASDVVDRYANHIYYGSGATGMALVVIDGN 59

Query: 70  -------------KQDEPRY-----PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
                            P+       ASL+K+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSFGETRPGNNQHPQLDSVIRIASLSKLMTSEMLVKLLDQGVVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++   +    T    
Sbjct: 117 -PPGARVPDWQGKPITLVNL 135


>gi|254839212|pdb|2ZQ7|A Chain A, Apo Structure Of Class A Beta-Lactamase Toho-1
           E166aR274NR276N TRIPLE MUTANT
 gi|254839214|pdb|2ZQ9|A Chain A, Cephalothin Acyl-Intermediate Structure Of Class A Beta-
           Lactamase Toho-1 E166aR274NR276N TRIPLE MUTANT
 gi|254839215|pdb|2ZQA|A Chain A, Cefotaxime Acyl-Intermediate Structure Of Class A
           Beta-Lacta Toho-1 E166aR274NR276N TRIPLE MUTANT
 gi|254839216|pdb|2ZQC|A Chain A, Aztreonam Acyl-Intermediate Structure Of Class A
           Beta-Lactam Toho-1 E166aR274NR276N TRIPLE MUTANT
 gi|254839217|pdb|2ZQD|A Chain A, Ceftazidime Acyl-Intermediate Structure Of Class A
           Beta-Lact Toho-1 E166aR274NR276N TRIPLE MUTANT
          Length = 262

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 27  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 85

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 86  HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 136


>gi|8052261|emb|CAB92324.1| TEM-68 ES-beta-lactamase [Klebsiella pneumoniae]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|37778088|gb|AAR02602.1| beta lactamase [Expression vector pVTU260]
 gi|37778090|gb|AAR02603.1| beta lactamase [Expression vector pVTU263]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   +   +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDVGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|8134349|sp|O69395|BLT2_ECOLX RecName: Full=Beta-lactamase Toho-2; Flags: Precursor
 gi|3142149|dbj|BAA28282.1| beta-lactamase [Escherichia coli]
          Length = 289

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 62/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  +  L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMSAAAACIPLLLGSPTLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|325282281|ref|YP_004254822.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Deinococcus proteolyticus MRP]
 gi|324314090|gb|ADY25205.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Deinococcus proteolyticus MRP]
          Length = 459

 Score = 41.8 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 48  LHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
           L A  + + +V D+   ++        P  PAS TK++T   +   L       +T++ V
Sbjct: 71  LPANVRMTLLVQDLVTGEVRESLNSRAPMIPASTTKLVTAAAVLGELNGMDGWWSTELTV 130

Query: 107 SKTAATQN 114
                 + 
Sbjct: 131 PAAEWGRE 138


>gi|317049065|ref|YP_004116713.1| beta-lactamase [Pantoea sp. At-9b]
 gi|316950682|gb|ADU70157.1| beta-lactamase [Pantoea sp. At-9b]
          Length = 389

 Score = 41.8 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           +QD     ASL+K+MT  ++ +  +  ++ L+   P+SK A +
Sbjct: 78  QQDSLIRIASLSKLMTSEVMVKMAERGQIRLDD--PLSKYAPS 118


>gi|2118167|pir||S60312 extended spectrum beta-lactamase CAZ-7 - Klebsiella pneumoniae
 gi|296956|emb|CAA46346.1| extended spectrum beta-lactamase CAZ-7 [Klebsiella pneumoniae]
          Length = 286

 Score = 41.8 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 64/180 (35%), Gaps = 17/180 (9%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           A IT S N  +      I G ++   F   M +   ++         A    +++    A
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAIPNDERDTTMPA 182


>gi|297192942|ref|ZP_06910340.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|297151569|gb|EDY66561.2| D-alanyl-D-alanine carboxypeptidase [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 459

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 36/87 (41%), Gaps = 8/87 (9%)

Query: 135 LITRSANDVSTAFGEFIS---GSEKKFAILMSNKAKKIG-----MQNTIYKNASGLHDKN 186
           ++T S ND++ +     +   G +  FA       K++      +  T + + SGL+ ++
Sbjct: 295 MLTDSDNDIAESLARQTAVATGDQPSFAGAERAVTKQLRRLQLPLAGTRFADGSGLNRRD 354

Query: 187 QITTARDQAILGILLRKNFPQYYKYFS 213
           +++ A    +L        P+     +
Sbjct: 355 KVSAALLTTVLARAADAAHPELRPILT 381



 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKM 83
           P  +  VID+   +    K+ E P  PAS  K+
Sbjct: 93  PAPAVCVIDLTTGERLYGKRAEAPMVPASTVKI 125


>gi|58200709|gb|AAW66604.1| beta-lactamase TEM-11 [Proteus mirabilis]
          Length = 286

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 63/180 (35%), Gaps = 17/180 (9%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           A IT S N  +      I G ++   F   M +   ++         A    +++    A
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAIPNDERDTTMPA 182


>gi|283476896|emb|CAY72748.1| Penicillin-binding protein ampH [Erwinia pyrifoliae DSM 12163]
          Length = 413

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 20/103 (19%)

Query: 44  MASELHAKPKYSS---IVIDVNKNQMTGF------------KQDEPRYPASLTKMMTLYI 88
            A  +    K S+   + ID N  ++               ++D     ASL+K+MT  +
Sbjct: 60  YADNIFYNTKASAMAIVAIDAN-QRVFASRGSVRPGSQQPPEKDSLIRVASLSKLMTSQL 118

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +    +  +L L+   P+SK A     S++             
Sbjct: 119 MVRLAEEGRLQLDD--PLSKYA--PPGSRVPSFNGQPIRLINL 157


>gi|45925922|gb|AAS79107.1| class A beta-lactamase TEM-134 [Citrobacter koseri]
          Length = 286

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 64/180 (35%), Gaps = 17/180 (9%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191
           A IT S N  +      I G ++   F   M +   ++         A    +++    A
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAIPNDERDTTMPA 182


>gi|15902053|ref|NP_357603.1| hypothetical protein spr0009 [Streptococcus pneumoniae R6]
 gi|182682979|ref|YP_001834726.1| hypothetical protein SPCG_0009 [Streptococcus pneumoniae CGSP14]
 gi|15457537|gb|AAK98813.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|182628313|gb|ACB89261.1| hypothetical protein SPCG_0009 [Streptococcus pneumoniae CGSP14]
          Length = 445

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 13/126 (10%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKLHLN 101
           M SE + K  +S  V  +   +  G  QDE  Y AS+ K+   Y+    E +      L+
Sbjct: 213 MLSEKYQKDSFSIYVKQLTTGKEAGINQDEKMYAASVLKL--SYLYYTQEKINEGLYQLD 270

Query: 102 TQIPVSKTAATQNPSKLYLKEKT--------YFTTEQGILALITRSANDVSTAFGEFISG 153
           T +           S       +         ++ +  I  +   S N      G +IS 
Sbjct: 271 TTVKYVSAVNDFPGSYKPEGSGSLPKKEDNKEYSLKDLITKVSKESDNVAHNLLGYYISN 330

Query: 154 -SEKKF 158
            S+  F
Sbjct: 331 QSDATF 336


>gi|24158844|pdb|1LI9|A Chain A, Crystal Structure Of Tem-34 Beta-Lactamase At 1.5 Angstrom
          Length = 263

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 17  ARVGYIELDLNSGKILESFRPEERFPMVSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 76

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 77  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 134

Query: 167 KKI 169
            ++
Sbjct: 135 TRL 137


>gi|23505686|gb|AAN05028.1| TEM-75 beta-lactamase [Klebsiella pneumoniae]
          Length = 261

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 7/145 (4%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 28  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 87

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 88  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 145

Query: 167 KKIGMQNTIYKNASGLHDKNQITTA 191
            ++         A    +++    A
Sbjct: 146 TRLDHWEPELNEAIPNDERDTTMPA 170


>gi|2765071|emb|CAA71324.1| ES-beta-lactamase [Escherichia coli]
          Length = 286

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +      A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|313835721|gb|EFS73435.1| conserved hypothetical protein [Propionibacterium acnes HL037PA2]
 gi|314928394|gb|EFS92225.1| conserved hypothetical protein [Propionibacterium acnes HL044PA1]
 gi|314970199|gb|EFT14297.1| conserved hypothetical protein [Propionibacterium acnes HL037PA3]
 gi|328908026|gb|EGG27785.1| beta-lactamase related protein [Propionibacterium sp. P08]
          Length = 292

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 58/179 (32%), Gaps = 14/179 (7%)

Query: 46  SELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            +L  +  +S  + D +   +      E     AS+ K+  L  +   L   +L  + +I
Sbjct: 7   PDLDPRLTWSVRITDAD-GSVLAEHTPEVVCLTASVGKLFLLVEVATQLCDGRLSPDQRI 65

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
            +       +   LY     +       L +   S N  + A    +  S       +  
Sbjct: 66  KIPADHWVADSGLLYRMRDQHVPVADAALLVGAVSDNLATNALVRLVGLS------SVHE 119

Query: 165 KAKKIGMQNT----IYKNASGLHDKNQIT--TARDQAILGILLRKNFPQYYKYFSIRKF 217
            AK++G  NT      +   G  D    +   A +   L   +  + P       +R++
Sbjct: 120 VAKRLGFSNTLMLDYIRADRGPDDPETTSYGCAAELCELAHRIGSDDPDEVLTDGVRQW 178


>gi|310766296|gb|ADP11246.1| Penicillin-binding protein ampH [Erwinia sp. Ejp617]
          Length = 413

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 20/103 (19%)

Query: 44  MASELHAKPKYSS---IVIDVNKNQMTGF------------KQDEPRYPASLTKMMTLYI 88
            A  +    K S+   + ID N  ++               ++D     ASL+K+MT  +
Sbjct: 60  YADNIFYNTKASAMAIVAIDAN-QRVFASRGSVRPGSQQPPEKDSLIRVASLSKLMTSQL 118

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +    +  +L L+   P+SK A     S++             
Sbjct: 119 MVRLAEEGRLQLDD--PLSKYA--PPGSRVPSFNGQPIRLINL 157


>gi|294013124|ref|YP_003546584.1| beta-lactamase class A [Sphingobium japonicum UT26S]
 gi|292676454|dbj|BAI97972.1| beta-lactamase class A [Sphingobium japonicum UT26S]
          Length = 323

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 35/116 (30%), Gaps = 20/116 (17%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119
           D+   +   +  D     AS  K+     I   L +  L L+  +               
Sbjct: 61  DLGTGETLAYNGDTLFPMASTYKLAVAAKILSLLDAGSLSLDEPL--------------- 105

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           ++          I   +T S N+ + A      G +      +++  +  G++   
Sbjct: 106 MRLGRPLPVRTLIDMSLTLSDNEATDALVARAGGPQA-----VNDWVRAAGIKGLR 156


>gi|289166918|ref|YP_003445185.1| hypothetical protein smi_0009 [Streptococcus mitis B6]
 gi|288906483|emb|CBJ21313.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 422

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 9/124 (7%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           M SE + K  +S  V  +   +  G  QDE  Y AS+ K+  LY   E +      L+T 
Sbjct: 190 MLSEKYQKDSFSIYVKQLTTGKEAGINQDEKMYAASVLKLPYLYYAQEKINEGLYQLDTT 249

Query: 104 IPVSKTAATQNPSKLYLKEKT--------YFTTEQGILALITRSANDVSTAFGEFISG-S 154
           +    +      S       +         ++ +  I  +   S N      G +IS  S
Sbjct: 250 VKYVSSVNDFPGSYKPEGSGSLPKKEDNKEYSLKDLITKVSKESDNVAHNILGYYISNQS 309

Query: 155 EKKF 158
           +  F
Sbjct: 310 DSTF 313


>gi|283806794|pdb|2WYX|A Chain A, Neutron Structure Of A Class A Beta-Lactamase  Toho-1
           E166a R274n R276n Triple Mutant
          Length = 256

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 24  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 82

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 83  HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 133


>gi|226439459|gb|ACO56763.1| beta-lactamase VEB-7 [Acinetobacter baumannii]
          Length = 299

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 86/268 (32%), Gaps = 34/268 (12%)

Query: 22  IYIQRNIQLMGKILFLSI---------IMISMASELHAKPKYSSIVIDVNKNQ--MTGFK 70
           + I + I L+   LF ++         + + + + L AK     + I  N N+       
Sbjct: 1   MKIVKRILLVLLSLFFTVEYSNAQTDNLTLKIENVLKAKNARIGVAI-FNSNEKDTLKIN 59

Query: 71  QDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTY 125
            D      S+ K  +     +   +    L    +I ++       T +P K      T 
Sbjct: 60  NDFHFPMQSVMKFPI--ALAVLSEIDKGNLSFEQKIEITPQDLLPKTWSPIKEEFPNGTT 117

Query: 126 FTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
            T EQ +   ++ S N       + I G  S +KF          I              
Sbjct: 118 LTIEQILNYTVSESDNIGCDILLKLIGGTDSVQKFLNANHFTDISIKANEEQMHKDWNTQ 177

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH----NKLLNKMH--NI 237
            +N  T       +  LL   +    +  S + + +  +I+       N+L  ++    I
Sbjct: 178 YQNWATP----TAMNKLLIDTYNNKNQLLSKKSYDFIWKIMRETTTGSNRLKGQLPKNTI 233

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              KTG    SG N   +    D  ++ 
Sbjct: 234 VAHKTGT---SGINNGITAATNDVGVIT 258


>gi|183584860|gb|ACC63898.1| beta-lactamase TEM-166 [synthetic construct]
          Length = 286

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMT-GFKQDEPR 75
           + ++     F +  +   A          +E     +   I +D+N  ++  GF+ +E  
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILEGFRPEERF 64

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
              S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|146260007|gb|ABQ14366.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|15081590|gb|AAK82652.1| beta-lactamase TEM-102 [Plasmid pWW100]
          Length = 286

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 40  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 99

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 100 LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 157

Query: 167 KKI 169
            ++
Sbjct: 158 TRL 160


>gi|310824864|ref|YP_003957222.1| beta-lactamase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397936|gb|ADO75395.1| Beta-lactamase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 492

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 17/65 (26%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKE-----KTYF 126
           D      S+TK  T  +I + +   KL L+  +             +YL +      T  
Sbjct: 73  DTKFRIGSITKQFTAMVIMQLVNEGKLKLDDTV------------SMYLPDYRKDTGTRV 120

Query: 127 TTEQG 131
           T  Q 
Sbjct: 121 TVTQL 125


>gi|238801254|gb|ACR56340.1| beta-lactamase CTX-M-2 [Klebsiella pneumoniae]
 gi|238801256|gb|ACR56341.1| beta-lactamase CTX-M-2 [Klebsiella pneumoniae]
 gi|238801258|gb|ACR56342.1| beta-lactamase CTX-M-2 [Klebsiella pneumoniae]
 gi|238801260|gb|ACR56343.1| beta-lactamase CTX-M-2 [Klebsiella pneumoniae]
 gi|238801262|gb|ACR56344.1| beta-lactamase CTX-M-2 [Klebsiella pneumoniae]
 gi|238801264|gb|ACR56345.1| beta-lactamase CTX-M-2 [Klebsiella pneumoniae]
 gi|238801266|gb|ACR56346.1| beta-lactamase CTX-M-2 [Klebsiella pneumoniae]
          Length = 281

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 52  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 110

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 111 HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 161


>gi|18129363|emb|CAD20592.1| beta-lactamase class A [Kluyvera ascorbata]
          Length = 291

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 115 HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 165


>gi|190410144|ref|YP_001966135.1| TEM-1 beta lactamase gene [Neisseria gonorrhoeae]
 gi|89112911|gb|ABD61074.1| TEM-1 beta lactamase gene [Neisseria gonorrhoeae]
          Length = 286

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 40  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 99

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 100 LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 157

Query: 167 KKI 169
            ++
Sbjct: 158 TRL 160


>gi|302487937|gb|ADL40245.1| TEM-1 beta-lactamase [Pseudomonas aeruginosa]
 gi|312949078|gb|ADR29904.1| beta-lactamase [Escherichia coli O83:H1 str. NRG 857C]
          Length = 286

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 40  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 99

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 100 LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 157

Query: 167 KKI 169
            ++
Sbjct: 158 TRL 160


>gi|259014674|gb|ACV88637.1| beta-lactamase TEM-1 [Escherichia coli]
          Length = 256

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 34  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 93

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 94  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 151

Query: 167 KKI 169
            ++
Sbjct: 152 TRL 154


>gi|259014672|gb|ACV88636.1| beta-lactamase TEM-1 [Escherichia coli]
          Length = 261

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 34  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 93

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 94  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 151

Query: 167 KKI 169
            ++
Sbjct: 152 TRL 154


>gi|258654695|ref|YP_003203851.1| beta-lactamase [Nakamurella multipartita DSM 44233]
 gi|258557920|gb|ACV80862.1| beta-lactamase [Nakamurella multipartita DSM 44233]
          Length = 268

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 15/27 (55%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           ASLTK++T   + +      + L+ ++
Sbjct: 38  ASLTKVITALTVLDASVEGVISLDDEV 64


>gi|297561339|ref|YP_003680313.1| beta-lactamase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296845787|gb|ADH67807.1| beta-lactamase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 302

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 2/95 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK-TAATQ 113
           S +V D+   +  G + D     ASL K+       E +++ ++    Q+ V      T 
Sbjct: 22  SFLVRDLRTGEELGIEPDLEFSTASLVKVPLAVATLERIRAGEIDGAEQVLVQPGRITTP 81

Query: 114 NPSKL-YLKEKTYFTTEQGILALITRSANDVSTAF 147
            P+ +   +     + E  +   +  S N  + A 
Sbjct: 82  GPTGVSRFRHPARVSVEDLLYLSMCLSDNAATDAL 116


>gi|146259997|gb|ABQ14362.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|28192514|gb|AAN05026.1| TEM-117 beta-lactamase [Escherichia coli]
          Length = 255

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 28  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 87

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 88  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 145

Query: 167 KKI 169
            ++
Sbjct: 146 TRL 148


>gi|70906550|gb|AAZ14955.1| beta-lactamase CTX-M-43 [Acinetobacter baumannii]
          Length = 291

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 115 HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 165


>gi|225860056|ref|YP_002741565.1| beta-lactamase class A [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229479|ref|ZP_06963160.1| beta-lactamase [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255105|ref|ZP_06978691.1| beta-lactamase [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298501800|ref|YP_003723740.1| beta-lactamase class A [Streptococcus pneumoniae TCH8431/19A]
 gi|225727669|gb|ACO23520.1| beta-lactamase class A [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237395|gb|ADI68526.1| beta-lactamase class A [Streptococcus pneumoniae TCH8431/19A]
 gi|327388995|gb|EGE87343.1| putative exported protein [Streptococcus pneumoniae GA04375]
          Length = 422

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 13/126 (10%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKLHLN 101
           M SE + K  +S  V  +   +  G  QDE  Y AS+ K+   Y+    E +      L+
Sbjct: 190 MLSEKYQKDSFSIYVKQLTTGKEAGINQDEKMYAASVLKL--SYLYYTQEKINEGLYQLD 247

Query: 102 TQIPVSKTAATQNPSKLYLKEKT--------YFTTEQGILALITRSANDVSTAFGEFISG 153
           T +           S       +         ++ +  I  +   S N      G +IS 
Sbjct: 248 TTVKYVSAVNDFPGSYKPEGSGSLPKKEDNKEYSLKDLITKVSKESDNVAHNLLGYYISN 307

Query: 154 -SEKKF 158
            S+  F
Sbjct: 308 QSDATF 313


>gi|48734424|gb|AAT46414.1| beta-lactamase TEM-125 [Escherichia coli]
          Length = 286

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 40  ARVGYIELDLNSGKILESFRPEERFPMLSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 99

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 100 LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 157

Query: 167 KKI 169
            ++
Sbjct: 158 TRL 160


>gi|32187779|emb|CAD99181.1| beta-lactamase CTX-M-31 [Providencia sp. 4440]
 gi|32187781|emb|CAD99182.1| beta-lactamase CTX-M-31 [Escherichia coli]
          Length = 291

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + +++ ++
Sbjct: 115 HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDESFRL 165


>gi|3282028|emb|CAA76795.1| beta-lactamase class A [Klebsiella pneumoniae]
          Length = 286

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|14588993|emb|CAC43230.1| TEM-86 ES-beta-lactamase [Klebsiella pneumoniae]
          Length = 286

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +      A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|2765069|emb|CAA71323.1| ES-beta-lactamase [Klebsiella pneumoniae]
          Length = 286

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +      A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|14588991|emb|CAC43229.1| TEM-85 ES-beta-lactamase [Klebsiella pneumoniae]
          Length = 286

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +      A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|27374443|gb|AAD33116.2|AF091113_1 beta-lactamase [Proteus mirabilis]
          Length = 286

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 40  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 99

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 100 LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 157

Query: 167 KKI 169
            ++
Sbjct: 158 TRL 160


>gi|312184022|gb|ADQ42774.1| beta-lactamase TEM-1 [Acinetobacter baumannii]
          Length = 270

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 30  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 89

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 90  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 147

Query: 167 KKI 169
            ++
Sbjct: 148 TRL 150


>gi|115374747|ref|ZP_01462023.1| beta-lactamase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368224|gb|EAU67183.1| beta-lactamase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 498

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 17/65 (26%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKE-----KTYF 126
           D      S+TK  T  +I + +   KL L+  +             +YL +      T  
Sbjct: 79  DTKFRIGSITKQFTAMVIMQLVNEGKLKLDDTV------------SMYLPDYRKDTGTRV 126

Query: 127 TTEQG 131
           T  Q 
Sbjct: 127 TVTQL 131


>gi|46276337|gb|AAS86427.1| inhibitor-resistant TEM beta-lactamase [Escherichia coli]
          Length = 232

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 31  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 90

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 91  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 148

Query: 167 KKI 169
            ++
Sbjct: 149 TRL 151


>gi|33318322|gb|AAQ05031.1|AF467990_1 extended spectrum beta-lactamase TEM [Klebsiella pneumoniae]
          Length = 286

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|23505688|gb|AAN05029.1| TEM-118 beta-lactamase [Klebsiella oxytoca]
          Length = 261

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 7/145 (4%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 28  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 87

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 88  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 145

Query: 167 KKIGMQNTIYKNASGLHDKNQITTA 191
            ++         A    +++    A
Sbjct: 146 TRLDHWEPELNEAIPNDERDTTMPA 170


>gi|332198667|gb|EGJ12750.1| putative exported protein [Streptococcus pneumoniae GA41317]
          Length = 422

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 13/126 (10%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKLHLN 101
           M SE + K  +S  V  +   +  G  QDE  Y AS+ K+   Y+    E +      L+
Sbjct: 190 MLSEKYQKDSFSIYVKQLTTGKEAGINQDEKMYAASVLKL--SYLYYTQEKINEGLYQLD 247

Query: 102 TQIPVSKTAATQNPSKLYLKEKT--------YFTTEQGILALITRSANDVSTAFGEFISG 153
           T +           S       +         ++ +  I  +   S N      G +IS 
Sbjct: 248 TTVKYVSAVNDFPGSYKPEGSGSLPKKEDNKEYSLKDLITKVSKESDNVAHNLLGYYISN 307

Query: 154 -SEKKF 158
            S+  F
Sbjct: 308 QSDATF 313


>gi|302562639|ref|ZP_07314981.1| beta lactamase [Streptomyces griseoflavus Tu4000]
 gi|302480257|gb|EFL43350.1| beta lactamase [Streptomyces griseoflavus Tu4000]
          Length = 312

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 12/111 (10%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQS---KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
            D+    ASL KM    ++ E+ +     +L    ++ V+              +    +
Sbjct: 52  ADDAVVIASLFKM---LLVLEFARQVVAGQLDPRERVRVTSADRLGGWGTAGCLDDVELS 108

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
                   ++ S N  +      +          +   AK++G++ T    
Sbjct: 109 LRDLAYFAMSVSDNSAADLLLHRVG------LDTVRLLAKELGLERTRVVG 153


>gi|259907095|ref|YP_002647451.1| beta-lactam binding protein AmpH [Erwinia pyrifoliae Ep1/96]
 gi|224962717|emb|CAX54172.1| Penicillin-binding protein [Erwinia pyrifoliae Ep1/96]
          Length = 391

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 20/103 (19%)

Query: 44  MASELHAKPKYSS---IVIDVNKNQMTGF------------KQDEPRYPASLTKMMTLYI 88
            A  +    K S+   + ID N  ++               ++D     ASL+K+MT  +
Sbjct: 38  YADNIFYNTKASAMAIVAIDAN-QRVFASRGSVRPGSQQPPEKDSLIRVASLSKLMTSQL 96

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           +    +  +L L+   P+SK A     S++             
Sbjct: 97  MVRLAEEGRLQLDD--PLSKYA--PPGSRVPSFNGQPIRLINL 135


>gi|193227724|emb|CAQ42486.1| beta-lactamase [Kluyvera ascorbata]
          Length = 291

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 115 HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 165


>gi|20198333|gb|AAM15527.1|AF347054_1 inhibitor-resistant beta-lactamase TEM-80 [Enterobacter cloacae]
          Length = 286

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMLSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A +T S N  +      I G ++   F   M +   ++
Sbjct: 123 AAVTMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|16304824|emb|CAC95175.1| CTX-M-20 beta-lactamase [Proteus mirabilis]
          Length = 291

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 115 HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 165


>gi|8134350|sp|Q47066|BLT1_ECOLX RecName: Full=Beta-lactamase Toho-1; Flags: Precursor
 gi|1037162|dbj|BAA07082.1| beta-lactamase (Toho-1) [Escherichia coli]
 gi|50400168|gb|AAT76431.1| beta-lactamase TOHO-1 [Shigella flexneri]
          Length = 291

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 115 HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 165


>gi|213419392|ref|ZP_03352458.1| beta-lactamase/D-alanine carboxypeptidase [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 227

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           D     ASLTK+MT  ++ + L    + LN   P+SK A
Sbjct: 4   DSVIRIASLTKLMTSEMLVKLLDQGTVKLND--PLSKYA 40


>gi|56123232|gb|AAV74524.1| beta-lactamase TEM1E [Escherichia coli]
          Length = 269

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 31  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 90

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 91  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 148

Query: 167 KKI 169
            ++
Sbjct: 149 TRL 151


>gi|315940011|gb|ADU56216.1| CTX-M-14 extended-spectrum beta-lactamase [Escherichia coli]
          Length = 291

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP-----KYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQSSAVRQKLAALEKSSGGRQGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|300782261|ref|YP_003762552.1| lipoprotein [Amycolatopsis mediterranei U32]
 gi|299791775|gb|ADJ42150.1| lipoprotein [Amycolatopsis mediterranei U32]
          Length = 293

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 54/162 (33%), Gaps = 38/162 (23%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           S IV+D     ++   + +    ASL K+   +I  +YL+S     + +IP    A    
Sbjct: 24  SYIVVDQETGTVSASDEHKQYRSASLVKL---FIALDYLESH--GPDYEIPADDLA---- 74

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
                            +  ++  S +D ++         E     ++      IG+ +T
Sbjct: 75  ----------------LLEPMLRSSNDDAASTLWVRDGWDE-----IVKRMVTTIGLTDT 113

Query: 175 ---IYKNASGLHDKNQITTARDQAILGILLRKNF-PQYYKYF 212
                +   G        +A D A     +  +  P+Y  + 
Sbjct: 114 APPTARGKWGYTA----ISAADIAKTYQYILHDANPKYRDFI 151


>gi|284486659|gb|ADB90403.1| TEM-1b beta-lactamase [Klebsiella pneumoniae]
          Length = 266

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 30  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 89

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 90  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 147

Query: 167 KKI 169
            ++
Sbjct: 148 TRL 150


>gi|315444932|ref|YP_004077811.1| beta-lactamase class A [Mycobacterium sp. Spyr1]
 gi|315263235|gb|ADT99976.1| beta-lactamase class A [Mycobacterium sp. Spyr1]
          Length = 296

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 29/172 (16%)

Query: 25  QRNIQLMGKILF-LSIIMISMASELHAKP------KYSSIVI-----------DVNKNQM 66
           +R++ L G  LF L+           A+P      + +++             D++    
Sbjct: 6   RRHVLLGGLSLFALTACSTQTVLADPARPLPPPEERIAALAARHDARIGLYAADLDSGAT 65

Query: 67  TGFKQDEPRYPASLTKMMT--LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-LKEK 123
             F   +     S  K  T     + + +Q  +L L   + + + A  +  S +   +  
Sbjct: 66  LAFGDTDTFAVCSTFK--TYAAGAVLQRVQQGRLGLGDTVLI-EAADIRPHSPVTEPRVG 122

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           T  T  +   A + +S N  +      + G        ++  A+ IG   T 
Sbjct: 123 TAMTLAELCQAALQQSDNAAANGLLRVLGGPSA-----ITEFARSIGDDRTR 169


>gi|260578094|ref|ZP_05846015.1| penicillin-binding protein [Corynebacterium jeikeium ATCC 43734]
 gi|258603733|gb|EEW16989.1| penicillin-binding protein [Corynebacterium jeikeium ATCC 43734]
          Length = 612

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 43/138 (31%), Gaps = 32/138 (23%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTG-------------FKQ------------DEPR 75
            +  A E       S++V+D    ++                KQ             +  
Sbjct: 255 ALQQAREKSGAKSASAVVLDSKTGEIIAMGSSDSIDPNGDIEKQLKRKKVFGDRATADSF 314

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEK-TYFTTEQGILA 134
            P S+ K+MT       +Q  K   +  + V     + + S + +K+   +         
Sbjct: 315 EPGSVAKIMTA---AAAIQEGKTTPDEVLKV---PGSIDMSGVTVKDAWEHGEVPYTTTG 368

Query: 135 LITRSANDVSTAFGEFIS 152
           +  +S+N  +    + + 
Sbjct: 369 VFGKSSNVGTLMLAQRVG 386


>gi|241764650|ref|ZP_04762663.1| Beta-lactamase [Acidovorax delafieldii 2AN]
 gi|241365870|gb|EER60513.1| Beta-lactamase [Acidovorax delafieldii 2AN]
          Length = 142

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 1/89 (1%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAATQNPS 116
           V+D +  +  G +  E    AS  K++        +   K  L  +I    +     +P+
Sbjct: 53  VLDTHTGRRVGHRGGELFPMASTFKLLLAAQTLRLVDEGKEQLGRRITYRREDLLAYSPA 112

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVST 145
                     T E      +T S N  + 
Sbjct: 113 TGPHAGGAGMTVEALCEGTMTLSDNTAAN 141


>gi|206577079|ref|YP_002240170.1| penicillin-binding protein AmpH [Klebsiella pneumoniae 342]
 gi|288936916|ref|YP_003440975.1| beta-lactamase [Klebsiella variicola At-22]
 gi|290510027|ref|ZP_06549397.1| beta-lactamase [Klebsiella sp. 1_1_55]
 gi|206566137|gb|ACI07913.1| penicillin-binding protein AmpH [Klebsiella pneumoniae 342]
 gi|288891625|gb|ADC59943.1| beta-lactamase [Klebsiella variicola At-22]
 gi|289776743|gb|EFD84741.1| beta-lactamase [Klebsiella sp. 1_1_55]
          Length = 386

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-------------- 69
           ++R++ +   +   S   +  A++    P ++S V+D   N +                 
Sbjct: 1   MKRSLLIFAALCAASWTSV-QAAQPTVDPVFASDVVDRYANHIYYGSGATGMALVVIDGN 59

Query: 70  -------------KQDEPRY-----PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
                            P+       ASL+K+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSFGETRPGNNQHPQLDSVIRIASLSKLMTSEMLVKLLDQGVVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++   +    T    
Sbjct: 117 -PPGTRVPDWQGKPITLVNL 135


>gi|6137226|gb|AAF04388.1|AF189721_1 beta-lactamase CTX-M-8 precursor [Citrobacter amalonaticus]
          Length = 291

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP-----KYSSI-----------VID-VNKNQM 66
           ++  ++ M  +    I ++  ++ L+A+      K +++           +ID  +  Q 
Sbjct: 2   MRHRVKRMMLMTTACISLLLGSAPLYAQANDVQQKLAALEKSSGGRLGVALIDTADNAQT 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAATQNPSKLYLKEKTY 125
              + DE     S +K+M    + +  +++K  L+ ++ + S      NP        T 
Sbjct: 62  LY-RADERFAMCSTSKVMAAAAVLKQSETQKKVLSQKVEIKSSDLINYNPITEKHVNGT- 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            T  +   A +  S N         + G +K   FA  + +   ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAHLGGPDKVTAFARAIGDNTFRL 165


>gi|39933439|ref|NP_945715.1| putative class A beta-lactamase [Rhodopseudomonas palustris CGA009]
 gi|39647285|emb|CAE25806.1| putative class A beta-lactamase precursor (penicillinase)
           [Rhodopseudomonas palustris CGA009]
          Length = 291

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 55/148 (37%), Gaps = 9/148 (6%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV--SKTAATQNP 115
           V+D    +M G + D+     S  K++   ++   +  K+ +L+ ++    S        
Sbjct: 50  VLDTASGRMIGHRLDDRFPMCSTFKVLAAGLVLARVDRKQENLDRRVSYAKSDLVTYSPA 109

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQN 173
           ++ ++++    T  +   A IT S N  +        G      FA  + ++  ++    
Sbjct: 110 TEKHVEDG--MTIAELCEAAITLSDNTAANLLLASFGGPAGLTAFARSLGDETTRLDRIE 167

Query: 174 TIYKNASGLHDKNQITT---ARDQAILG 198
           T    A     ++  +    A+D   L 
Sbjct: 168 TELNEALAGDPRDTTSPRAMAQDLRALT 195


>gi|55820787|ref|YP_139229.1| hypothetical protein stu0721 [Streptococcus thermophilus LMG 18311]
 gi|55736772|gb|AAV60414.1| conserved hypothetical protein [Streptococcus thermophilus LMG
           18311]
          Length = 459

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 66/209 (31%), Gaps = 34/209 (16%)

Query: 84  MTL---------YIIFEYLQSKKLHLNTQIPV--SKTAATQNPSKLYLKEKTYFTTEQGI 132
           MT           ++ + +   KL L  +  +  ++        K         T  +  
Sbjct: 241 MTAGSTYKLPLNMLVMDEVNRGKLSLTERFDINNTEYEYQGEHDKYVASFGGAMTIPEMQ 300

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
              +  S N  + A  E + G EK F  ++    K  G   T      G    N+ TT  
Sbjct: 301 EYSLVYSENTPAYALAERLGGMEK-FYGMLDKYGKSKGKVKT--IQMHG----NKTTTDY 353

Query: 193 DQAILGIL--LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
              +L  L   ++N+     Y       + N     +   L         K GY R +  
Sbjct: 354 YIQVLDYLWKHQENYKDILHYIGE---SFPNEYYKTYLPGLTIYQ-----KPGYVREALN 405

Query: 251 NIVTSLRYKDDPIVAVV----MGMPTSQE 275
             V ++  +D P +  +    +G  T + 
Sbjct: 406 --VDAIVMEDTPYMVAIYTGYLGGSTEES 432


>gi|332199077|gb|EGJ13158.1| putative exported protein [Streptococcus pneumoniae GA47901]
          Length = 422

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 13/126 (10%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKLHLN 101
           M SE + K  +S  V  +   +  G  QDE  Y AS+ K+   Y+    E +      L+
Sbjct: 190 MLSEKYQKDSFSIYVKQLTTGKEAGINQDEKMYAASVLKL--SYLYYTQEKINEGLYQLD 247

Query: 102 TQIPVSKTAATQNPSKLYLKEKT--------YFTTEQGILALITRSANDVSTAFGEFISG 153
           T +           S       +         ++ +  I  +   S N      G +IS 
Sbjct: 248 TTVKYVSAVNDFPGSYKPEGSGSLPKKEDNKEYSLKDLITKVSKESDNVAHNLLGYYISN 307

Query: 154 -SEKKF 158
            S+  F
Sbjct: 308 QSDATF 313


>gi|303297117|gb|ADM08178.1| beta-lactamase CTX-M-97 [Escherichia coli]
          Length = 291

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 115 HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 165


>gi|19571743|emb|CAD20588.3| beta-lactamase class A [Kluyvera ascorbata]
          Length = 291

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 115 HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 165


>gi|114881106|ref|YP_758647.1| Beta lactamase [Pseudomonas aeruginosa]
 gi|168998381|ref|YP_001687658.1| beta-lactamase TEM precursor [Birmingham IncP-alpha plasmid]
 gi|190014891|ref|YP_001965403.1| Beta-lactamase [Escherichia coli]
 gi|3859496|gb|AAC77431.1| beta lactamase [Pseudomonas aeruginosa]
 gi|6634546|emb|CAB64361.1| beta lactamase TEM-2 [Stenotrophomonas maltophilia]
 gi|8117211|dbj|BAA96316.1| beta lactamase [Shuttle vector pNIC6010]
 gi|8117218|dbj|BAA96322.1| beta lactamase [Shuttle vector pNIC6011]
 gi|8117225|dbj|BAA96328.1| beta lactamase [Shuttle vector pNIC6012]
 gi|21998651|emb|CAA38429.1| penicillinase TEM-2 [Pseudomonas aeruginosa]
 gi|42718127|gb|AAS38487.1| beta-lactamase [Proteus mirabilis]
 gi|53794412|gb|AAU93763.1| Bla [Integration vector pJK202]
 gi|109389612|gb|ABG29531.1| Beta-lactamase [Escherichia coli]
 gi|114703517|emb|CAK12637.1| Beta Lactamase [Pseudomonas aeruginosa]
 gi|157277486|tpe|CAJ85677.1| TPA: beta lactamase [Birmingham IncP-alpha plasmid]
          Length = 286

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|2118168|pir||S60310 extended spectrum beta-lactamase CAZ-2 - Klebsiella pneumoniae
 gi|296952|emb|CAA46344.1| extended spectrum beta-lactamase CAZ-2 [Klebsiella pneumoniae]
          Length = 286

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|298209138|ref|YP_003717317.1| beta-lactamase, putative [Croceibacter atlanticus HTCC2559]
 gi|83849065|gb|EAP86934.1| beta-lactamase, putative [Croceibacter atlanticus HTCC2559]
          Length = 504

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 71  QDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            D   Y  AS+TK MT  ++ + +   KL L+  I
Sbjct: 81  NDSTLYEIASVTKTMTGALVAQAVLEGKLSLDDDI 115


>gi|70996903|ref|XP_753206.1| beta-lactamase [Aspergillus fumigatus Af293]
 gi|66850842|gb|EAL91168.1| beta-lactamase, putative [Aspergillus fumigatus Af293]
 gi|159127064|gb|EDP52180.1| beta-lactamase, putative [Aspergillus fumigatus A1163]
          Length = 438

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 60  DVNK-----NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           D N       Q    + D     ASLTK+ T       + + +L L+  +
Sbjct: 99  DANGTELPRGQQLSARPDTIYDLASLTKLFTTIAALREIDTGRLALDQTV 148


>gi|15899959|ref|NP_344563.1| hypothetical protein SP_0010 [Streptococcus pneumoniae TIGR4]
 gi|111658621|ref|ZP_01409271.1| hypothetical protein SpneT_02000211 [Streptococcus pneumoniae
           TIGR4]
 gi|116515953|ref|YP_815433.1| hypothetical protein SPD_0010 [Streptococcus pneumoniae D39]
 gi|148984554|ref|ZP_01817842.1| hypothetical protein CGSSp3BS71_10883 [Streptococcus pneumoniae
           SP3-BS71]
 gi|148988914|ref|ZP_01820329.1| hypothetical protein CGSSp6BS73_07548 [Streptococcus pneumoniae
           SP6-BS73]
 gi|148993575|ref|ZP_01823046.1| hypothetical protein CGSSp9BS68_11802 [Streptococcus pneumoniae
           SP9-BS68]
 gi|149007706|ref|ZP_01831315.1| hypothetical protein CGSSp18BS74_00020 [Streptococcus pneumoniae
           SP18-BS74]
 gi|149013374|ref|ZP_01834083.1| hypothetical protein CGSSp19BS75_00175 [Streptococcus pneumoniae
           SP19-BS75]
 gi|168487651|ref|ZP_02712159.1| beta-lactamase class A [Streptococcus pneumoniae CDC1087-00]
 gi|168489345|ref|ZP_02713544.1| beta-lactamase class A [Streptococcus pneumoniae SP195]
 gi|168491780|ref|ZP_02715923.1| beta-lactamase class A [Streptococcus pneumoniae CDC0288-04]
 gi|169832420|ref|YP_001693444.1| beta-lactamase class A [Streptococcus pneumoniae Hungary19A-6]
 gi|225857819|ref|YP_002739329.1| beta-lactamase class A [Streptococcus pneumoniae 70585]
 gi|237821202|ref|ZP_04597047.1| beta-lactamase class A [Streptococcus pneumoniae CCRI 1974M2]
 gi|303254911|ref|ZP_07340996.1| beta-lactamase class A [Streptococcus pneumoniae BS455]
 gi|303259736|ref|ZP_07345712.1| beta-lactamase class A [Streptococcus pneumoniae SP-BS293]
 gi|303262203|ref|ZP_07348148.1| beta-lactamase class A [Streptococcus pneumoniae SP14-BS292]
 gi|303265399|ref|ZP_07351306.1| beta-lactamase class A [Streptococcus pneumoniae BS397]
 gi|303266053|ref|ZP_07351947.1| beta-lactamase class A [Streptococcus pneumoniae BS457]
 gi|303268461|ref|ZP_07354255.1| beta-lactamase class A [Streptococcus pneumoniae BS458]
 gi|307126184|ref|YP_003878215.1| beta-lactamase [Streptococcus pneumoniae 670-6B]
 gi|14971474|gb|AAK74203.1| conserved domain protein [Streptococcus pneumoniae TIGR4]
 gi|116076529|gb|ABJ54249.1| conserved hypothetical protein [Streptococcus pneumoniae D39]
 gi|147760701|gb|EDK67673.1| hypothetical protein CGSSp18BS74_00020 [Streptococcus pneumoniae
           SP18-BS74]
 gi|147762897|gb|EDK69845.1| hypothetical protein CGSSp19BS75_00175 [Streptococcus pneumoniae
           SP19-BS75]
 gi|147923331|gb|EDK74445.1| hypothetical protein CGSSp3BS71_10883 [Streptococcus pneumoniae
           SP3-BS71]
 gi|147925725|gb|EDK76801.1| hypothetical protein CGSSp6BS73_07548 [Streptococcus pneumoniae
           SP6-BS73]
 gi|147927796|gb|EDK78818.1| hypothetical protein CGSSp9BS68_11802 [Streptococcus pneumoniae
           SP9-BS68]
 gi|168994922|gb|ACA35534.1| beta-lactamase class A [Streptococcus pneumoniae Hungary19A-6]
 gi|183569572|gb|EDT90100.1| beta-lactamase class A [Streptococcus pneumoniae CDC1087-00]
 gi|183572332|gb|EDT92860.1| beta-lactamase class A [Streptococcus pneumoniae SP195]
 gi|183573969|gb|EDT94497.1| beta-lactamase class A [Streptococcus pneumoniae CDC0288-04]
 gi|225720336|gb|ACO16190.1| beta-lactamase class A [Streptococcus pneumoniae 70585]
 gi|301793335|emb|CBW35694.1| putative exported protein [Streptococcus pneumoniae INV104]
 gi|301799159|emb|CBW31671.1| putative exported protein [Streptococcus pneumoniae OXC141]
 gi|301800983|emb|CBW33644.1| putative exported protein [Streptococcus pneumoniae INV200]
 gi|302598182|gb|EFL65243.1| beta-lactamase class A [Streptococcus pneumoniae BS455]
 gi|302636843|gb|EFL67333.1| beta-lactamase class A [Streptococcus pneumoniae SP14-BS292]
 gi|302639288|gb|EFL69747.1| beta-lactamase class A [Streptococcus pneumoniae SP-BS293]
 gi|302641962|gb|EFL72315.1| beta-lactamase class A [Streptococcus pneumoniae BS458]
 gi|302644357|gb|EFL74610.1| beta-lactamase class A [Streptococcus pneumoniae BS457]
 gi|302645076|gb|EFL75316.1| beta-lactamase class A [Streptococcus pneumoniae BS397]
 gi|306483246|gb|ADM90115.1| beta-lactamase [Streptococcus pneumoniae 670-6B]
 gi|332071332|gb|EGI81827.1| putative exported protein [Streptococcus pneumoniae GA17545]
 gi|332071713|gb|EGI82206.1| putative exported protein [Streptococcus pneumoniae GA17570]
          Length = 422

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 13/126 (10%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKLHLN 101
           M SE + K  +S  V  +   +  G  QDE  Y AS+ K+   Y+    E +      L+
Sbjct: 190 MLSEKYQKDSFSIYVKQLTTGKEAGINQDEKMYAASVLKL--SYLYYTQEKINEGLYQLD 247

Query: 102 TQIPVSKTAATQNPSKLYLKEKT--------YFTTEQGILALITRSANDVSTAFGEFISG 153
           T +           S       +         ++ +  I  +   S N      G +IS 
Sbjct: 248 TTVKYVSAVNDFPGSYKPEGSGSLPKKEDNKEYSLKDLITKVSKESDNVAHNLLGYYISN 307

Query: 154 -SEKKF 158
            S+  F
Sbjct: 308 QSDATF 313


>gi|308235340|ref|ZP_07666077.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Gardnerella vaginalis ATCC 14018]
 gi|311114322|ref|YP_003985543.1| D-Ala-D-Ala carboxypeptidase 3 (S13) domain-containing protein
           [Gardnerella vaginalis ATCC 14019]
 gi|310945816|gb|ADP38520.1| D-Ala-D-Ala carboxypeptidase 3 (S13) domain protein [Gardnerella
           vaginalis ATCC 14019]
          Length = 594

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           P  S+++ D N  ++   K +     PAS  K +T       L      L+T +
Sbjct: 171 PNASAVIADAN-GKIIAAKNENLALQPASTMKTLTALAASHVLDMGS-TLSTTV 222


>gi|6165409|emb|CAB59824.1| beta-lactamase class A [Kluyvera ascorbata]
 gi|18129349|emb|CAD20585.1| beta-lactamase class A [Kluyvera ascorbata]
 gi|18129351|emb|CAD20586.1| beta-lactamase class A [Kluyvera ascorbata]
 gi|18129365|emb|CAD20593.1| beta-lactamase class A [Kluyvera ascorbata]
          Length = 291

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 115 HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 165


>gi|8469132|sp|P74841|BLC2_SALTY RecName: Full=Beta-lactamase CTX-M-2; AltName: Full=Cefotaximase 2;
           Flags: Precursor
 gi|1524366|emb|CAA63263.1| ES-beta-lactamase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|16304822|emb|CAC95174.1| CTX-M-2 beta-lactamase [Proteus mirabilis]
 gi|18307538|emb|CAD20939.1| beta-lactamase CTX-M-2 [Salmonella enterica subsp. enterica serovar
           Infantis]
 gi|20086227|gb|AAM03345.1| beta-lactamase CTX-M-2 [Proteus mirabilis]
 gi|41023646|emb|CAF18338.1| beta-lactamase CTX-M-2 precursor [Morganella morganii subsp.
           morganii]
 gi|50726689|dbj|BAD34451.1| beta-lactamase CTX-M-2 [Acinetobacter baumannii]
 gi|53988350|gb|AAV28216.1| beta-lactamase CTX-M-2 [Escherichia coli]
 gi|68262577|emb|CAJ13506.1| beta-lactamase CTX-M-2 precursor [Klebsiella pneumoniae]
 gi|68262580|emb|CAJ13508.1| beta-lactamase CTX-M-2 precursor [Klebsiella pneumoniae]
 gi|71273554|emb|CAJ13620.1| beta-lactamase [Escherichia coli]
 gi|71273565|emb|CAJ13630.1| beta-lactamase [Escherichia coli]
 gi|74055071|gb|AAZ95872.1| beta lactamase CTX-M-2 [Escherichia coli]
 gi|84180563|gb|ABC54728.1| beta-lactamase CTX-M-2 precursor [Vibrio cholerae]
 gi|148615578|gb|ABQ96621.1| beta-lactamase CTX-M-2 [Salmonella enterica subsp. enterica serovar
           Virchow]
 gi|148615589|gb|ABQ96631.1| beta-lactamase CTX-M-2 [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|157139474|gb|ABV24345.1| extended spectrum beta-lactamase CTX-M-2 [Klebsiella pneumoniae]
 gi|171674367|gb|ACB47942.1| CTX-M-2 [Klebsiella pneumoniae]
 gi|184216057|gb|ACC77477.1| CTX-M-2 [Klebsiella pneumoniae]
 gi|184216066|gb|ACC77485.1| CTX-M-2 [Klebsiella pneumoniae]
 gi|184216074|gb|ACC77492.1| CTX-M-2 [Klebsiella pneumoniae]
 gi|184216082|gb|ACC77499.1| CTX-M-2 [Klebsiella pneumoniae]
 gi|184216090|gb|ACC77506.1| CTX-M-2 [Klebsiella pneumoniae]
 gi|192822653|gb|ACF06162.1| beta-lactamase CTX-M2 [Klebsiella pneumoniae]
 gi|225579648|gb|ACN93993.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
 gi|225579658|gb|ACN93998.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
 gi|225579660|gb|ACN93999.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
 gi|225579662|gb|ACN94000.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
 gi|225579664|gb|ACN94001.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
 gi|225579668|gb|ACN94003.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
 gi|225579674|gb|ACN94006.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
 gi|225579678|gb|ACN94008.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
 gi|225579684|gb|ACN94011.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
 gi|225579686|gb|ACN94012.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
 gi|225579688|gb|ACN94013.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
 gi|225579690|gb|ACN94014.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
 gi|225579696|gb|ACN94017.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
 gi|225579698|gb|ACN94018.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
 gi|225579702|gb|ACN94020.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
 gi|225579710|gb|ACN94024.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
 gi|225579712|gb|ACN94025.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
 gi|225579724|gb|ACN94031.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
 gi|225579730|gb|ACN94034.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
 gi|225579734|gb|ACN94036.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
 gi|270267860|gb|ACZ65510.1| beta-lactamse CTX-M-2 [Escherichia coli]
 gi|288872167|dbj|BAI70510.1| beta-lactamase [Proteus mirabilis]
 gi|288872170|dbj|BAI70512.1| beta-lactamase [Proteus mirabilis]
 gi|288872173|dbj|BAI70514.1| beta-lactamase [Proteus mirabilis]
 gi|288872176|dbj|BAI70516.1| beta-lactamase [Proteus mirabilis]
 gi|294862105|gb|ADF45647.1| beta-lactamase CTX-M-2 [Pseudomonas aeruginosa]
 gi|294862107|gb|ADF45648.1| beta-lactamase CTX-M-2 [Pseudomonas aeruginosa]
 gi|294862109|gb|ADF45649.1| beta-lactamase CTX-M-2 [Pseudomonas aeruginosa]
 gi|294862111|gb|ADF45650.1| beta-lactamase CTX-M-2 [Pseudomonas aeruginosa]
 gi|294862113|gb|ADF45651.1| beta-lactamase CTX-M-2 [Pseudomonas aeruginosa]
 gi|294862115|gb|ADF45652.1| beta-lactamase CTX-M-2 [Pseudomonas aeruginosa]
 gi|294862117|gb|ADF45653.1| beta-lactamase CTX-M-2 [Pseudomonas aeruginosa]
 gi|294862119|gb|ADF45654.1| beta-lactamase CTX-M-2 [Pseudomonas aeruginosa]
 gi|294862121|gb|ADF45655.1| beta-lactamase CTX-M-2 [Pseudomonas aeruginosa]
 gi|294862123|gb|ADF45656.1| beta-lactamase CTX-M-2 [Pseudomonas aeruginosa]
 gi|294862125|gb|ADF45657.1| beta-lactamase CTX-M-2 [Pseudomonas aeruginosa]
 gi|1588604|prf||2209219B cefotaximase CTX-M-2
          Length = 291

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 115 HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 165


>gi|265260945|gb|ACY74743.1| extended spectrum beta-lactamase CTX-M-92 [Escherichia coli]
          Length = 291

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 115 HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 165


>gi|256425209|ref|YP_003125862.1| hypothetical protein Cpin_6255 [Chitinophaga pinensis DSM 2588]
 gi|256040117|gb|ACU63661.1| conserved hypothetical protein [Chitinophaga pinensis DSM 2588]
          Length = 425

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 72/190 (37%), Gaps = 29/190 (15%)

Query: 59  IDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKLH-LNTQIPVSKTAATQNPS 116
           ID N      F      YPAS  K+  T  +  E L    +  L+   P+  T + +  S
Sbjct: 81  IDANS----YF------YPASTVKLPATA-LALEKLNDLAIAGLDRHTPMY-TDSLEGIS 128

Query: 117 KLYLKEKT----YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              L + +      + EQ I  ++  S ND      EFI   ++ F    + +  + G  
Sbjct: 129 PAVLTDSSAADGQPSVEQYIKKILLVSDNDAFNRLYEFIG--QETF----NKRLWEKGFG 182

Query: 173 NT---IYKNASGL-HDKNQITTARDQAILGILLRKNFPQYYKY-FSIRKFRYRNRIITNH 227
           NT        SGL  ++N+ T A      G +L +    Y +  FS R     +      
Sbjct: 183 NTQILHRVGVSGLSPEQNRHTNAVTFRKAGKVLYQQPAAYSQLQFSPRHDSIGHAYYNKE 242

Query: 228 NKLLNKMHNI 237
           ++L+N   + 
Sbjct: 243 HQLINSPMDA 252


>gi|125634074|gb|ABN48311.1| beta-lactamase CTX-M-56 [Escherichia coli]
          Length = 291

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 115 HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 165


>gi|48473853|emb|CAG34105.1| class A beta-lactamase [Klebsiella oxytoca]
          Length = 286

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|16798370|gb|AAL29433.1|AF427127_1 inhibitor-resistant beta-lactamase TEM-81 [Escherichia coli]
          Length = 286

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMLSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A +T S N  +      I G ++   F   M +   ++
Sbjct: 123 AAVTMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|302544950|ref|ZP_07297292.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Streptomyces hygroscopicus ATCC 53653]
 gi|302462568|gb|EFL25661.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Streptomyces himastatinicus ATCC 53653]
          Length = 521

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 44 MASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTL 86
          +A  L        +V D +   +    + D+   PAS TK+ T 
Sbjct: 48 LADPLLKGGAAGVVVADADSGDVLYRHRADDRLMPASNTKLFTS 91


>gi|225855745|ref|YP_002737256.1| beta-lactamase class A [Streptococcus pneumoniae P1031]
 gi|225724635|gb|ACO20487.1| beta-lactamase class A [Streptococcus pneumoniae P1031]
          Length = 422

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 13/126 (10%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKLHLN 101
           M SE + K  +S  V  +   +  G  QDE  Y AS+ K+   Y+    E +      L+
Sbjct: 190 MLSEKYQKDSFSIYVKQLTTGKEAGINQDEKMYAASVLKL--SYLYYTQEKINEGLYQLD 247

Query: 102 TQIPVSKTAATQNPSKLYLKEKT--------YFTTEQGILALITRSANDVSTAFGEFISG 153
           T +           S       +         ++ +  I  +   S N      G +IS 
Sbjct: 248 TTVKYVSAVNDFPGSYKPEGSGSLPKKEDNKEYSLKDLITKVSKESDNVAHNLLGYYISN 307

Query: 154 -SEKKF 158
            S+  F
Sbjct: 308 QSDATF 313


>gi|194396993|ref|YP_002036731.1| hypothetical protein SPG_0010 [Streptococcus pneumoniae G54]
 gi|194356660|gb|ACF55108.1| conserved hypothetical protein [Streptococcus pneumoniae G54]
          Length = 422

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 13/126 (10%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKLHLN 101
           M SE + K  +S  V  +   +  G  QDE  Y AS+ K+   Y+    E +      L+
Sbjct: 190 MLSEKYQKDSFSIYVKQLTTGKEAGINQDEKMYAASVLKL--SYLYYTQEKINEGLYQLD 247

Query: 102 TQIPVSKTAATQNPSKLYLKEKT--------YFTTEQGILALITRSANDVSTAFGEFISG 153
           T +           S       +         ++ +  I  +   S N      G +IS 
Sbjct: 248 TTVKYVSAVNDFPGSYKPEGSGSLPKKEDNKEYSLKDLITKVSKESDNVAHNLLGYYISN 307

Query: 154 -SEKKF 158
            S+  F
Sbjct: 308 QSDATF 313


>gi|148997948|ref|ZP_01825461.1| hypothetical protein CGSSp11BS70_05095 [Streptococcus pneumoniae
           SP11-BS70]
 gi|149020168|ref|ZP_01835142.1| hypothetical protein CGSSp23BS72_09034 [Streptococcus pneumoniae
           SP23-BS72]
 gi|168484298|ref|ZP_02709250.1| beta-lactamase class A [Streptococcus pneumoniae CDC1873-00]
 gi|168576120|ref|ZP_02722025.1| beta-lactamase class A [Streptococcus pneumoniae MLV-016]
 gi|307066646|ref|YP_003875612.1| beta-lactamase class A [Streptococcus pneumoniae AP200]
 gi|147755958|gb|EDK63001.1| hypothetical protein CGSSp11BS70_05095 [Streptococcus pneumoniae
           SP11-BS70]
 gi|147930846|gb|EDK81827.1| hypothetical protein CGSSp23BS72_09034 [Streptococcus pneumoniae
           SP23-BS72]
 gi|172042423|gb|EDT50469.1| beta-lactamase class A [Streptococcus pneumoniae CDC1873-00]
 gi|183578117|gb|EDT98645.1| beta-lactamase class A [Streptococcus pneumoniae MLV-016]
 gi|306408183|gb|ADM83610.1| Beta-lactamase class A [Streptococcus pneumoniae AP200]
 gi|332198874|gb|EGJ12956.1| putative exported protein [Streptococcus pneumoniae GA47368]
          Length = 422

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 13/126 (10%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKLHLN 101
           M SE + K  +S  V  +   +  G  QDE  Y AS+ K+   Y+    E +      L+
Sbjct: 190 MLSEKYQKDSFSIYVKQLTTGKEAGINQDEKMYAASVLKL--SYLYYTQEKINEGLYQLD 247

Query: 102 TQIPVSKTAATQNPSKLYLKEKT--------YFTTEQGILALITRSANDVSTAFGEFISG 153
           T +           S       +         ++ +  I  +   S N      G +IS 
Sbjct: 248 TTVKYVSAVNDFPGSYKPEGSGSLPKKEDNKEYSLKDLITKVSKESDNVAHNLLGYYISN 307

Query: 154 -SEKKF 158
            S+  F
Sbjct: 308 QSDATF 313


>gi|312140262|ref|YP_004007598.1| beta-lactamase [Rhodococcus equi 103S]
 gi|311889601|emb|CBH48918.1| putative beta-lactamase [Rhodococcus equi 103S]
          Length = 273

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           S+ V+D ++  +  F   +  YP AS+TK++  Y     ++   + L+  
Sbjct: 16  SAAVVDGSRG-VAHFGDGQRIYPLASVTKLLCAYATLVAVEEGAVELDQP 64


>gi|307293773|ref|ZP_07573617.1| Beta-lactamase [Sphingobium chlorophenolicum L-1]
 gi|306879924|gb|EFN11141.1| Beta-lactamase [Sphingobium chlorophenolicum L-1]
          Length = 323

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 22/117 (18%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           D++  +   +  D     AS  K+ +T  I    L +  L L+ Q+P             
Sbjct: 61  DLSTGETLAYNGDTLFPMASTYKVAVTAKI-LSLLDAGSLSLDEQLP------------- 106

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             +          I   +T S N+ + A      G +      +++  +  G++   
Sbjct: 107 --RLGRLLPVRTLIDMSLTLSDNEATDALVARAGGPQA-----VNDWVRAAGIKGLR 156


>gi|325676991|ref|ZP_08156662.1| beta-lactamase [Rhodococcus equi ATCC 33707]
 gi|325552153|gb|EGD21844.1| beta-lactamase [Rhodococcus equi ATCC 33707]
          Length = 273

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           S+ V+D ++  +  F   +  YP AS+TK++  Y     ++   + L+  
Sbjct: 16  SAAVVDGSRG-VAHFGDGQRIYPLASVTKLLCAYATLVAVEEGAVELDQP 64


>gi|43798|emb|CAA45828.1| extended-spectrum beta-lactamase TEM-3 [Klebsiella pneumoniae]
          Length = 286

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|301349385|gb|ADK74336.1| beta-lactamase CTX-M-27 [Shigella sonnei]
          Length = 288

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 61/162 (37%), Gaps = 18/162 (11%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHA-KPKYSSI-----------VID-VNKNQMTGFK 70
           +QR +      + L +    + ++  A + K +++           +ID  +  Q+   +
Sbjct: 2   VQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY-R 60

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTYFTTE 129
            DE     S +K+M    + +  +++K  LN  + + K A   N + +  K      T  
Sbjct: 61  GDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGTMTLA 119

Query: 130 QGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
           +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 ELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 161


>gi|168493990|ref|ZP_02718133.1| beta-lactamase class A [Streptococcus pneumoniae CDC3059-06]
 gi|221230958|ref|YP_002510110.1| hypothetical protein SPN23F_00100 [Streptococcus pneumoniae ATCC
           700669]
 gi|225853621|ref|YP_002735133.1| beta-lactamase class A [Streptococcus pneumoniae JJA]
 gi|183575882|gb|EDT96410.1| beta-lactamase class A [Streptococcus pneumoniae CDC3059-06]
 gi|220673418|emb|CAR67876.1| putative exported protein [Streptococcus pneumoniae ATCC 700669]
 gi|225722519|gb|ACO18372.1| beta-lactamase class A [Streptococcus pneumoniae JJA]
          Length = 422

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 13/126 (10%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKLHLN 101
           M SE + K  +S  V  +   +  G  QDE  Y AS+ K+   Y+    E +      L+
Sbjct: 190 MLSEKYQKDSFSIYVKQLTTGKEAGINQDEKMYAASVLKL--SYLYYTQEKINEGLYQLD 247

Query: 102 TQIPVSKTAATQNPSKLYLKEKT--------YFTTEQGILALITRSANDVSTAFGEFISG 153
           T +           S       +         ++ +  I  +   S N      G +IS 
Sbjct: 248 TTVKYVSAVNDFPGSYKPEGSGSLPKKEDNKEYSLKDLITKVSKESDNVAHNLLGYYISN 307

Query: 154 -SEKKF 158
            S+  F
Sbjct: 308 QSDATF 313


>gi|148654410|ref|YP_001274615.1| beta-lactamase [Roseiflexus sp. RS-1]
 gi|148566520|gb|ABQ88665.1| beta-lactamase [Roseiflexus sp. RS-1]
          Length = 354

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +P   ++  D +  +      D+    AS+TK+ T   +   +    + L+  +
Sbjct: 36  QPDICAVGSDAD-GRPLT--PDDLFPVASITKLATALAVLRLVDRGLIALDDPV 86


>gi|18129357|emb|CAD20589.1| beta-lactamase class A [Kluyvera ascorbata]
          Length = 291

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 115 HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 165


>gi|28192516|gb|AAN05027.1| TEM-110 beta-lactamase [Klebsiella oxytoca]
          Length = 261

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 28  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 87

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 88  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 145

Query: 167 KKI 169
            ++
Sbjct: 146 TRL 148


>gi|327404042|ref|YP_004344880.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Fluviicola taffensis DSM 16823]
 gi|327319550|gb|AEA44042.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Fluviicola taffensis DSM 16823]
          Length = 493

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 18/128 (14%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           A    S   +D +  Q+   K       PAS TK+      F+ L   K           
Sbjct: 44  ANASISFTAMDCSNGQILASKNPTLSLSPASTTKLFATATAFQLL--GK----------D 91

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAK 167
            A     +++YL +            L  R   DV+     +   G EK+F    ++   
Sbjct: 92  YA---PQTRIYL-DGELSKDGVLNGNLWIRGGGDVALGSRYYNGDGREKEFLEKWADTLI 147

Query: 168 KIGMQNTI 175
           K+G++   
Sbjct: 148 KLGIKKIN 155


>gi|325971408|ref|YP_004247599.1| beta-lactamase [Spirochaeta sp. Buddy]
 gi|324026646|gb|ADY13405.1| beta-lactamase [Spirochaeta sp. Buddy]
          Length = 420

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 25/99 (25%)

Query: 33  KILFLSIIMISMASELHAKP-----------KYSSIVIDVNKNQMTGFK----------- 70
           K+L L ++ ++  S   A+              S IV+  ++ ++   +           
Sbjct: 2   KVLLLILVSLAAGSGAWAQEYEVLEQIDRLVNLSGIVMVADRGEVVYQQSFGFADHQSKQ 61

Query: 71  --QDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
              +   +P ASLTK  T   I    +  +L ++  + +
Sbjct: 62  VIDEHTLFPLASLTKPFTAMAIGLLQEQGRLDIDDPVAM 100


>gi|46276339|gb|AAS86428.1| TEM beta-lactamase [Acinetobacter sp. U11]
          Length = 264

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 28  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 87

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 88  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 145

Query: 167 KKI 169
            ++
Sbjct: 146 TRL 148


>gi|10946252|gb|AAG24824.1|AF286192_2 beta-lactamase CTX-M-5 [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|2443465|gb|AAC32890.1| beta-lactamase CTX-M-5 [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|6580517|emb|CAB63259.1| class A beta-lactamase KLUA-2 [Kluyvera ascorbata]
          Length = 291

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 115 HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 165


>gi|18129359|emb|CAD20590.1| beta-lactamase class A [Kluyvera ascorbata]
 gi|82569006|emb|CAJ31231.1| beta-lactamase KLUA-9 [Kluyvera ascorbata]
          Length = 291

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 115 HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 165


>gi|322372676|ref|ZP_08047212.1| peptidase family S11 [Streptococcus sp. C150]
 gi|321277718|gb|EFX54787.1| peptidase family S11 [Streptococcus sp. C150]
          Length = 345

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 2/97 (2%)

Query: 62  NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLY 119
             N+       +P    S  K+    ++ + +   KL L  +  ++ T            
Sbjct: 114 KTNEHYSMNDTQPMTAGSTYKLPLNMLVMDEVNKGKLSLTERFDITNTEYEYQGEHDNYV 173

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
                  T  +     +  S N  + A  E + G EK
Sbjct: 174 AAFGGSMTIPEMQEYSLVYSENTPAYALAERLGGIEK 210


>gi|255950998|ref|XP_002566266.1| Pc22g23750 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211593283|emb|CAP99663.1| Pc22g23750 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 3061

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 77   PASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
             ASLTK+MT   I   ++  ++ L+  + 
Sbjct: 2729 MASLTKLMTTIAIMICVERGQISLDDDVT 2757


>gi|195977167|ref|YP_002122411.1| beta-lactamase [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|225869499|ref|YP_002745446.1| exported protein [Streptococcus equi subsp. equi 4047]
 gi|195973872|gb|ACG61398.1| beta-lactamase [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|225698903|emb|CAW91893.1| putative exported protein [Streptococcus equi subsp. equi 4047]
          Length = 428

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 31/136 (22%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN------TQI 104
           K  YS  V  +N     G   D+  Y AS++K+ TLY + + L+S  L          ++
Sbjct: 203 KENYSIFVKQLNTQASAGINADKQMYAASISKLATLYSVQKKLKSGSLSEGKSLKYIDEV 262

Query: 105 -------------PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
                         +SKTA  ++           +   + + A+  +S N  +   G ++
Sbjct: 263 NHFYGDYDPTGSGKISKTADKKD-----------YNVMELLKAVAQQSDNVATNILGYYL 311

Query: 152 SGSE-KKFAILMSNKA 166
                + F   +   A
Sbjct: 312 CNQYNQAFQSEIRALA 327


>gi|13562035|gb|AAK30619.1|AF351241_1 TEM-90 beta-lactamase [Escherichia coli]
          Length = 286

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L      T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTGG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|323710416|gb|ADY02609.1| beta-lactamase blaTEM [Shigella sonnei]
 gi|323710418|gb|ADY02610.1| beta-lactamase blaTEM [Shigella flexneri 3b]
 gi|323710420|gb|ADY02611.1| beta-lactamase blaTEM [Shigella flexneri 1a]
 gi|323710422|gb|ADY02612.1| beta-lactamase blaTEM [Shigella flexneri 4a]
          Length = 252

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 24  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 83

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 84  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 141

Query: 167 KKI 169
            ++
Sbjct: 142 TRL 144


>gi|300718470|ref|YP_003743273.1| penicillin-binding protein [Erwinia billingiae Eb661]
 gi|299064306|emb|CAX61426.1| Penicillin-binding protein [Erwinia billingiae Eb661]
          Length = 397

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE 129
           ++D     ASLTK++T  ++ +  +   + L+   P+SK A     S +           
Sbjct: 84  QKDSVIRIASLTKLLTSELLVKLSEQGVVRLDD--PLSKYAPA--GSSVPGYAGQTIRLI 139

Query: 130 QG 131
             
Sbjct: 140 NL 141


>gi|284486667|gb|ADB90407.1| TEM-1b beta-lactamase [Escherichia coli]
          Length = 264

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 27  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 86

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 87  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 144

Query: 167 KKI 169
            ++
Sbjct: 145 TRL 147


>gi|284031049|ref|YP_003380980.1| beta-lactamase [Kribbella flavida DSM 17836]
 gi|283810342|gb|ADB32181.1| beta-lactamase [Kribbella flavida DSM 17836]
          Length = 270

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 12/80 (15%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL------------K 121
           P Y AS  K++    +   + + +L L   + V    A+    +  +            K
Sbjct: 36  PHYSASTMKVLVAMAMLRKVDAGELSLEQPVTVHNDFASAAGGRFGVNRAEDEAPATWTK 95

Query: 122 EKTYFTTEQGILALITRSAN 141
                T       +ITRS+N
Sbjct: 96  LGEQVTLGWLATEMITRSSN 115


>gi|20302879|gb|AAM18924.1|AF495873_1 extended-spectrum beta-lactamase TEM-101 [Escherichia coli]
          Length = 286

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|315632439|gb|ADU53765.1| extended-spectrum beta-lactamase TEM-116 [Haemophilus parasuis]
 gi|315632441|gb|ADU53766.1| extended-spectrum beta-lactamase TEM-116 [Haemophilus parasuis]
          Length = 167

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 7/121 (5%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
              I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+    
Sbjct: 1   VGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLV 60

Query: 113 Q--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKK 168
           +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +   +
Sbjct: 61  EYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTR 118

Query: 169 I 169
           +
Sbjct: 119 L 119


>gi|110678570|ref|YP_681577.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Roseobacter denitrificans OCh 114]
 gi|109454686|gb|ABG30891.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Roseobacter denitrificans OCh 114]
          Length = 499

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 58  VIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYL 93
           V D    ++   +  E    PAS+TK +T     + L
Sbjct: 66  VADAKTGEILEARAPELGIAPASVTKAITALYALDTL 102


>gi|78214775|gb|ABB36576.1| carbenicillinase [Morganella morganii]
          Length = 288

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 52/157 (33%), Gaps = 15/157 (9%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKYSSI-----------VIDVNKNQMTGFKQDEPR 75
              L   +L  S++  S +     +    +I           V+D    +   +  ++  
Sbjct: 2   KFLLAFSLLIPSVVFASTSKFQQVEQDVKAIEVSLSARIGVSVLDTQNGEYWDYNGNQRF 61

Query: 76  YPASLTK-MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
              S  K +    ++++  +  K++ NT + + K         +  +     T +    A
Sbjct: 62  PKTSTFKTIACAKLLYDA-EQGKVNPNTTVEIKKADLVTYSPVIEKQVGQAITLDDACFA 120

Query: 135 LITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
            +T S N  +      + G      F   + +K  ++
Sbjct: 121 TMTTSDNTAANIILSAVCGPKGVTDFLRQIGDKETRL 157


>gi|296954|emb|CAA46345.1| extended spectrum beta-lactamase CAZ-6 [Klebsiella pneumoniae]
 gi|289065301|gb|ADC80803.1| extended spectrum beta-lactamase TEM-24 [Escherichia coli]
 gi|289065321|gb|ADC80822.1| extended spectrum beta-lactamase TEM-24 [Escherichia coli]
          Length = 286

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|193227727|emb|CAQ42480.1| beta-lactamase [Kluyvera ascorbata]
          Length = 291

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 115 HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 165


>gi|188990552|ref|YP_001902562.1| Beta-lactamase [Xanthomonas campestris pv. campestris str. B100]
 gi|167732312|emb|CAP50504.1| Beta-lactamase [Xanthomonas campestris pv. campestris]
          Length = 296

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 30/90 (33%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ++D       G +++E     S  K +    + + +   +L L  QI +  +   ++   
Sbjct: 55  LLDSGSGWRIGQRENERFPMCSTFKFVLAAAVLQRVDKGELRLTQQIKIRASDMLEHAPV 114

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAF 147
                    +  +   A +  S N  +   
Sbjct: 115 TERHVGGSLSVAELCQATMIHSDNPAANLL 144


>gi|3644036|gb|AAC43036.1| beta-lactamase [Xanthomonas campestris pv. campestris]
          Length = 295

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 30/90 (33%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ++D       G +++E     S  K +    + + +   +L L  QI +  +   ++   
Sbjct: 55  LLDSGSGWRIGQRENERFPMCSTFKFVLAAAVLQRVDKGELRLTQQIKIRASDMLEHAPV 114

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAF 147
                    +  +   A +  S N  +   
Sbjct: 115 TERHVGGSLSVAELCQATMIHSDNPAANLL 144


>gi|21232469|ref|NP_638386.1| beta lactamase [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66767447|ref|YP_242209.1| beta lactamase [Xanthomonas campestris pv. campestris str. 8004]
 gi|21114253|gb|AAM42310.1| beta lactamase [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66572779|gb|AAY48189.1| beta lactamase [Xanthomonas campestris pv. campestris str. 8004]
          Length = 296

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 30/90 (33%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ++D       G +++E     S  K +    + + +   +L L  QI +  +   ++   
Sbjct: 55  LLDSGSGWRIGQRENERFPMCSTFKFVLAAAVLQRVDKGELRLTQQIKIRASDMLEHAPV 114

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAF 147
                    +  +   A +  S N  +   
Sbjct: 115 TERHVGGSLSVAELCQATMIHSDNPAANLL 144


>gi|145224601|ref|YP_001135279.1| Beta-lactamase [Mycobacterium gilvum PYR-GCK]
 gi|145217087|gb|ABP46491.1| Beta-lactamase [Mycobacterium gilvum PYR-GCK]
          Length = 296

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 57/170 (33%), Gaps = 25/170 (14%)

Query: 25  QRNIQLMGKILF-LSIIMISMASELHAKP------KYSSIVI-----------DVNKNQM 66
           +R++ L G  LF L+           A+P      + +++             D++    
Sbjct: 6   RRHVLLGGLSLFALTACSTQTVLADPARPLPPPEERIAALAARHDARIGLYAADLDSGAT 65

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-LKEKTY 125
             F   +     S  K      + + +Q  +L L   + + + A  +  S +   +  T 
Sbjct: 66  LAFGDTDTFAVCSTFKTYAAGAVLQRVQQGRLGLGDTVLI-EAADIRPHSPVTEPRVGTA 124

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
            T  +   A + +S N  +      + G        ++  A+ IG   T 
Sbjct: 125 MTLAELCQAALQQSDNAAANGLLRVLGGPSA-----ITEFARSIGDDRTR 169


>gi|317507764|ref|ZP_07965468.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Segniliparus rugosus ATCC BAA-974]
 gi|316253963|gb|EFV13329.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Segniliparus rugosus ATCC BAA-974]
          Length = 442

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
            ++S +V+D    Q+   +  D    PAS  K++T 
Sbjct: 67  ARFSGVVLDGASGQVLWQRDADAAMTPASTMKLVTA 102


>gi|239909271|gb|ACS32294.1| extended spectrum beta-lactamase CTX-M-75 [Providencia stuartii]
          Length = 291

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 59/150 (39%), Gaps = 15/150 (10%)

Query: 33  KILFLSIIMISMA----SELHAKPKYS------SIVIDVNKNQMTGFKQDEPRYPASLTK 82
            +LF S  + + A     +L A  K S      +++   + +Q+   + DE     S +K
Sbjct: 18  SLLFSSATLHAQANSVQQQLEALEKSSGGRLGVALINTADNSQILY-RADERFAMCSTSK 76

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           +M    + +  +S K  LN ++ + K+     NP        T  T  +   A +  S N
Sbjct: 77  VMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEKHVNGT-MTLAELGAAALQYSDN 135

Query: 142 DVSTAFGEFISGSEK--KFAILMSNKAKKI 169
                    + G +K   FA  + ++  ++
Sbjct: 136 TAMNKLIAHLGGPDKVTAFARSLGDETFRL 165


>gi|77021517|gb|ABA60617.1| TEM extended-spectrum beta-lactamase [Shigella flexneri]
          Length = 286

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNGGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|323710394|gb|ADY02598.1| beta-lactamase blaTEM [Shigella sonnei]
 gi|323710396|gb|ADY02599.1| beta-lactamase blaTEM [Shigella dysenteriae 1]
 gi|323710398|gb|ADY02600.1| beta-lactamase blaTEM [Shigella dysenteriae 3]
 gi|323710400|gb|ADY02601.1| beta-lactamase blaTEM [Shigella flexneri 2a]
 gi|323710404|gb|ADY02603.1| beta-lactamase blaTEM [Shigella dysenteriae 2a]
          Length = 263

 Score = 41.4 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 27  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 86

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 87  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 144

Query: 167 KKI 169
            ++
Sbjct: 145 TRL 147


>gi|215261172|pdb|3CMZ|A Chain A, Tem-1 Class-A Beta-Lactamase L201p Mutant Apo Structure
          Length = 263

 Score = 41.4 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 17  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 76

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 77  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 134

Query: 167 KKI 169
            ++
Sbjct: 135 TRL 137


>gi|152968890|ref|YP_001333999.1| beta-lactam binding protein AmpH [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150953739|gb|ABR75769.1| beta-lactamase/D-ala carboxypeptidase, penicilling binding protein
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 386

 Score = 41.4 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 37/140 (26%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF-------------- 69
           ++R++ +   +   S   +  A++    P ++S V+D   N +                 
Sbjct: 1   MKRSLLIFAALCAASWTSV-QAAQPTVDPVFASDVVDRYANHIYYGSGATGMALVVIDGN 59

Query: 70  -------------KQDEPRY-----PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
                            P+       ASL+K+MT  ++ + L    + LN   P+SK A 
Sbjct: 60  QRVFRSFGETRPGNNQHPQLDSVIRIASLSKLMTSEMLVKLLDQGVVKLND--PLSKYA- 116

Query: 112 TQNPSKLYLKEKTYFTTEQG 131
               +++   +    T    
Sbjct: 117 -PPGARVPDWQGKPITLVNL 135


>gi|57157567|dbj|BAD83773.1| beta-lactamase CTX-M-35 [Klebsiella pneumoniae]
 gi|57157569|dbj|BAD83774.1| beta-lactamase CTX-M-35 [Escherichia coli]
 gi|57157571|dbj|BAD83775.1| beta-lactamase CTX-M-35 [Klebsiella oxytoca]
          Length = 291

 Score = 41.4 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 115 HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 165


>gi|68535819|ref|YP_250524.1| penicillin-binding protein [Corynebacterium jeikeium K411]
 gi|68263418|emb|CAI36906.1| penicillin-binding protein [Corynebacterium jeikeium K411]
          Length = 630

 Score = 41.4 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 43/138 (31%), Gaps = 32/138 (23%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTG-------------FKQ------------DEPR 75
            +  A E       S++V+D    ++                KQ             +  
Sbjct: 273 ALQQAREKSGAKSASAVVLDSKTGEIIAMGSSDSIDPNGDIEKQLKRKKVFGDRATADSF 332

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEK-TYFTTEQGILA 134
            P S+ K+MT       +Q  K   +  + V     + + S + +K+   +         
Sbjct: 333 EPGSVAKIMTA---AAAIQEGKTTPDEILKV---PGSIDMSGVTVKDAWEHGEVPYTTTG 386

Query: 135 LITRSANDVSTAFGEFIS 152
           +  +S+N  +    + + 
Sbjct: 387 VFGKSSNVGTLMLAQRVG 404


>gi|297243771|ref|ZP_06927701.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
           [Gardnerella vaginalis AMD]
 gi|296888192|gb|EFH26934.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
           [Gardnerella vaginalis AMD]
          Length = 534

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           ++++D N   +   + +  R PAS  K +T  +    L      L+TQ+
Sbjct: 100 AVIMDANGRVVASHEPNALREPASTLKTLTASVASRTLDMGS-TLDTQV 147


>gi|284486665|gb|ADB90406.1| TEM-1b beta-lactamase [Escherichia coli]
          Length = 263

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 26  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 85

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 86  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 143

Query: 167 KKI 169
            ++
Sbjct: 144 TRL 146


>gi|284486661|gb|ADB90404.1| TEM-1b beta-lactamase [Klebsiella pneumoniae]
          Length = 265

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 27  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 86

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 87  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 144

Query: 167 KKI 169
            ++
Sbjct: 145 TRL 147


>gi|134133931|gb|ABO61023.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 298

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 31/96 (32%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ++D   ++  G +QDE     S  K M    +    +     L+ ++PV +     +   
Sbjct: 57  LLDTASSRRVGHRQDERFPMCSTFKSMLAATVLSQAERAPALLDRRVPVREADLLSHAPV 116

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                    T      A I  S N  +      + G
Sbjct: 117 TRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGG 152


>gi|599572|dbj|BAA06252.1| beta-lactamase precursor [Proteus vulgaris]
          Length = 300

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 77/211 (36%), Gaps = 8/211 (3%)

Query: 62  NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV--SKTAATQNPSKLY 119
           + +Q+T  + +E    AS +K+M +  + +  + +   L+  I +  S   A    ++ +
Sbjct: 59  DNSQITY-RGEERFAMASTSKVMAVAAVLKASEKQAGLLDKNITIKKSDLVAYSPITEKH 117

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYK 177
           L      T  +   A +  S N       +++ G     +FA  +++   ++  +     
Sbjct: 118 LTTG--MTLAELSAATLQYSDNTAMNKILDYLGGPAKVTQFARSINDVTYRLDRKEPELN 175

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNI 237
            A     ++  +       L  L   +     +   +  +   N    N  K     H +
Sbjct: 176 TAIHGDPRDTTSPIAMAKSLQALTLGDALGQSQRQQLVTWLKGNTTGDNSIKAGLPKHWV 235

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDD-PIVAVV 267
            G KTG       N +  +  ++  P++ VV
Sbjct: 236 VGDKTGSGDYGTTNDIAVIWPENHAPLILVV 266


>gi|260656432|pdb|3JYI|A Chain A, Structural And Biochemical Evidence That A Tem-1 {beta}-
           Lactamase Asn170gly Active Site Mutant Acts Via
           Substrate- Assisted Catalysis
 gi|260656433|pdb|3JYI|B Chain B, Structural And Biochemical Evidence That A Tem-1 {beta}-
           Lactamase Asn170gly Active Site Mutant Acts Via
           Substrate- Assisted Catalysis
 gi|260656434|pdb|3JYI|C Chain C, Structural And Biochemical Evidence That A Tem-1 {beta}-
           Lactamase Asn170gly Active Site Mutant Acts Via
           Substrate- Assisted Catalysis
 gi|260656435|pdb|3JYI|D Chain D, Structural And Biochemical Evidence That A Tem-1 {beta}-
           Lactamase Asn170gly Active Site Mutant Acts Via
           Substrate- Assisted Catalysis
 gi|260656436|pdb|3JYI|E Chain E, Structural And Biochemical Evidence That A Tem-1 {beta}-
           Lactamase Asn170gly Active Site Mutant Acts Via
           Substrate- Assisted Catalysis
 gi|260656437|pdb|3JYI|F Chain F, Structural And Biochemical Evidence That A Tem-1 {beta}-
           Lactamase Asn170gly Active Site Mutant Acts Via
           Substrate- Assisted Catalysis
          Length = 263

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 17  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 76

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 77  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 134

Query: 167 KKI 169
            ++
Sbjct: 135 TRL 137


>gi|8569629|pdb|1ERM|A Chain A, X-Ray Crystal Structure Of Tem-1 Beta Lactamase In Complex
           With A Designed Boronic Acid Inhibitor
           (1r)-1-Acetamido-2- (3-Carboxyphenyl)ethane Boronic Acid
          Length = 263

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 17  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 76

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 77  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 134

Query: 167 KKI 169
            ++
Sbjct: 135 TRL 137


>gi|8569630|pdb|1ERO|A Chain A, X-Ray Crystal Structure Of Tem-1 Beta Lactamase In Complex
           With A Designed Boronic Acid Inhibitor (1r)-2-
           Phenylacetamido-2-(3-Carboxyphenyl)ethyl Boronic Acid
 gi|8569631|pdb|1ERQ|A Chain A, X-Ray Crystal Structure Of Tem-1 Beta Lactamase In Complex
           With A Designed Boronic Acid Inhibitor
           (1r)-1-Acetamido-2- (3-Carboxy-2-Hydroxyphenyl)ethyl
           Boronic Acid
 gi|46015634|pdb|1S0W|A Chain A, 1b Lactamse B LACTAMASE INHIBITOR
 gi|46015636|pdb|1S0W|B Chain B, 1b Lactamse B LACTAMASE INHIBITOR
 gi|157834258|pdb|1XPB|A Chain A, Structure Of Beta-Lactamase Tem1
          Length = 263

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 17  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 76

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 77  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 134

Query: 167 KKI 169
            ++
Sbjct: 135 TRL 137


>gi|288872164|dbj|BAI70508.1| beta-lactamase [Escherichia coli]
          Length = 288

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP-----KYSSI-----------VID-VNKNQM 66
           ++  ++ M  +    I ++  ++ L+A+      K +++           +ID  +  Q 
Sbjct: 2   MRHRVKRMMLMTTACISLLLGSAPLYAQANDVQQKLAALEKSSGGRLGVALIDTADNAQT 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAATQNPSKLYLKEKTY 125
              + DE     S +K+M    + +  +++K  L+ ++ + S      NP        T 
Sbjct: 62  LY-RADERFAMCSTSKVMAAAAVLKQSETQKKVLSQKVEIKSSDLINYNPITEKHVNGT- 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            T  +   A +  S N         + G +K   FA  + +   ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAHLGGPDKVTAFARAIGDNTFRL 165


>gi|146260009|gb|ABQ14367.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT- 109
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNG 91

Query: 110 -AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
                  ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|110610033|gb|ABG77582.1| extended spectrum beta-lactamase [Proteus mirabilis]
          Length = 286

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|46370397|gb|AAS89984.1| beta-lactamase [Enterobacter aerogenes]
          Length = 286

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|15988093|pdb|1JTD|A Chain A, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
           In Complex With Tem-1 Beta-Lactamase
          Length = 263

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 17  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 76

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 77  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 134

Query: 167 KKI 169
            ++
Sbjct: 135 TRL 137


>gi|288190912|gb|ADC43818.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|288190914|gb|ADC43819.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|288190916|gb|ADC43820.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|288190920|gb|ADC43822.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|288190922|gb|ADC43823.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|288190924|gb|ADC43824.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|288190926|gb|ADC43825.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|288190928|gb|ADC43826.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|288190930|gb|ADC43827.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|288190932|gb|ADC43828.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|288190934|gb|ADC43829.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|288190936|gb|ADC43830.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|288190938|gb|ADC43831.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|288190940|gb|ADC43832.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|288190942|gb|ADC43833.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|288190944|gb|ADC43834.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|291603823|gb|ADE20189.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|291603825|gb|ADE20190.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|291603827|gb|ADE20191.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|291603829|gb|ADE20192.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|291603831|gb|ADE20193.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|291603833|gb|ADE20194.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|291603835|gb|ADE20195.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
 gi|291603837|gb|ADE20196.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
          Length = 212

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 22  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 81

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 82  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 139

Query: 167 KKI 169
            ++
Sbjct: 140 TRL 142


>gi|284038154|ref|YP_003388084.1| beta-lactamase [Spirosoma linguale DSM 74]
 gi|283817447|gb|ADB39285.1| beta-lactamase [Spirosoma linguale DSM 74]
          Length = 524

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 11/58 (18%)

Query: 57  IVIDVN---KNQMTGFKQDEPRY--------PASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           IV+D        +     D+            AS+TK +T   + +     KL L+  
Sbjct: 73  IVLDGKLVYSGGVGYANVDKKIAATPKSLFRIASMTKSLTSMAVLKLRDEGKLRLDDP 130


>gi|33286378|gb|AAQ01671.1| extended-spectrum beta-lactamase [Escherichia coli]
 gi|34558690|gb|AAQ75087.1| extended-spectrum beta-lactamase TEM-121 [Enterobacter aerogenes]
          Length = 286

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 40  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 99

Query: 111 -ATQNP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
               +P ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 100 LVKYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 157

Query: 167 KKI 169
            ++
Sbjct: 158 TRL 160


>gi|28195099|gb|AAO33760.1| TEM-7 beta-lactamase [Escherichia coli]
          Length = 261

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 28  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 87

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 88  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 145

Query: 167 KKI 169
            ++
Sbjct: 146 TRL 148


>gi|522105|dbj|BAA07084.1| Pre BlaB Protein [Proteus vulgaris]
          Length = 300

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 77/211 (36%), Gaps = 8/211 (3%)

Query: 62  NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV--SKTAATQNPSKLY 119
           + +Q+T  + +E    AS +K+M +  + +  + +   L+  I +  S   A    ++ +
Sbjct: 59  DNSQITY-RGEERFAMASTSKVMAVAAVLKASEKQAGLLDKNITIKKSDLVAYSPITEKH 117

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYK 177
           L      T  +   A +  S N       +++ G     +FA  +++   ++  +     
Sbjct: 118 LTTG--MTLAELSAATLQYSDNTAMNKILDYLGGPAKVTQFARSINDVTYRLDRKEPELN 175

Query: 178 NASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNI 237
            A     ++  +       L  L   +     +   +  +   N    N  K     H +
Sbjct: 176 TAIHGDPRDTTSPIAMAKSLQALTLGDALGQSQRQQLVTWLKGNTTGDNSIKAGLPKHWV 235

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDD-PIVAVV 267
            G KTG       N +  +  ++  P++ VV
Sbjct: 236 VGDKTGSGDYGTTNDIAVIWPENHAPLILVV 266


>gi|284486663|gb|ADB90405.1| TEM-1b beta-lactamase [Klebsiella pneumoniae]
          Length = 258

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 26  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 85

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 86  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 143

Query: 167 KKI 169
            ++
Sbjct: 144 TRL 146


>gi|221229298|gb|ABO61004.2| L2 beta-lactamase [Stenotrophomonas maltophilia]
          Length = 301

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 10/102 (9%)

Query: 57  IVIDVNKNQMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++   N  ++ G +QDE     S  K  +L +  +     + ++ L+T++P+   A    
Sbjct: 59  VLYTGNGRRIGGHRQDERFPMCSTFK--SLLVAHVLSLADAGRVSLDTRVPI---AGKDL 113

Query: 115 PSKLYLK---EKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            S   +         T        +T S N  +    E + G
Sbjct: 114 LSYAPVARRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGG 155


>gi|297155635|gb|ADI05347.1| D-alanyl-D-alaninecarboxypeptidase/
          D-alanyl-D-alanine-endopeptidase [Streptomyces
          bingchenggensis BCW-1]
          Length = 525

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 42 ISMASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTL 86
            +A  L        +V D +   +      D+   PAS TK+ T 
Sbjct: 41 TLLADPLLKGGAAGVVVADADSGAVLYQHHPDDRLMPASNTKLFTS 86


>gi|546975|gb|AAB30893.1| TEM-2 beta-lactamase {Val-237 for Ala substitution} [Escherichia
           coli, K12, carbenicillin resistance mutant 554, plasmid
           R554, Peptide Plasmid Insertion Mutant, 263 aa]
          Length = 263

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 17  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 76

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 77  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 134

Query: 167 KKI 169
            ++
Sbjct: 135 TRL 137


>gi|312277428|gb|ADQ62085.1| Beta-lactamase class A [Streptococcus thermophilus ND03]
          Length = 430

 Score = 41.4 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 60/174 (34%), Gaps = 20/174 (11%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHL------NTQIPVSKTAATQN 114
           ++ + +     ++  Y AS+ K+  LY   E L  KKL L       + +     A   +
Sbjct: 215 LDTDCVAAINDEKSMYAASIAKLGVLYYAQERLSQKKLSLSNEYQYTSTVNGFPGAYDPD 274

Query: 115 PSK--LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
            S     + +   ++ E  + A+   S N  +   G +++           +KA      
Sbjct: 275 GSGKISKMTDDKNYSLENLLKAVAQNSDNVATNILGYYVANQYDNSFQKSVDKA------ 328

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
                +A+  +   +  TAR    L   + +       Y S   +    RI  N
Sbjct: 329 -----SATSWNMDKKELTARAAGTLMEAIYRQNGDIINYLSSTDYD-GERISKN 376


>gi|315632435|gb|ADU53763.1| beta-lactamase TEM-1 [Haemophilus parasuis]
 gi|315632437|gb|ADU53764.1| beta-lactamase TEM-1 [Haemophilus parasuis]
          Length = 167

 Score = 41.4 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 7/121 (5%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
              I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+    
Sbjct: 1   VGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLV 60

Query: 113 Q--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKK 168
           +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +   +
Sbjct: 61  EYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTR 118

Query: 169 I 169
           +
Sbjct: 119 L 119


>gi|56463107|gb|AAV91695.1| beta-lactamase TEM [Escherichia coli]
          Length = 221

 Score = 41.4 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVCYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|113969100|ref|YP_732893.1| beta-lactamase [Shewanella sp. MR-4]
 gi|113883784|gb|ABI37836.1| beta-lactamase [Shewanella sp. MR-4]
          Length = 394

 Score = 41.4 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           ++++ K +  G  QD     ASL+K +T  ++ + L + KL LN  +
Sbjct: 85  LLELQKGE--GINQDSRFVMASLSKQITATLVLQALDAGKLDLNQTL 129


>gi|304408832|ref|ZP_07390453.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Shewanella baltica OS183]
 gi|307302835|ref|ZP_07582590.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Shewanella baltica BA175]
 gi|304352653|gb|EFM17050.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Shewanella baltica OS183]
 gi|306913195|gb|EFN43617.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Shewanella baltica BA175]
          Length = 502

 Score = 41.4 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 21/79 (26%)

Query: 29 QLMGKILFLSIIMISMASELHA-----------------KPKYSSIV---IDVNKNQMTG 68
           L   +L  +   I+ A ++ A                  P++S I    +D++ NQ+  
Sbjct: 8  TLYASLLLAASHSIARAEQIDAGAIEIRTTSLSQAVSKISPRHSQIALLAMDMSSNQVIF 67

Query: 69 FKQDEPRY-PASLTKMMTL 86
           +Q E  + PAS  K++T 
Sbjct: 68 SQQAETLFIPASTQKLLTA 86


>gi|310779226|ref|YP_003967559.1| NLP/P60 protein [Ilyobacter polytropus DSM 2926]
 gi|309748549|gb|ADO83211.1| NLP/P60 protein [Ilyobacter polytropus DSM 2926]
          Length = 260

 Score = 41.4 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 67/158 (42%), Gaps = 21/158 (13%)

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           K+M +    + ++     L+ +I + +T  +   S +     + +T +  I+ ++T +  
Sbjct: 45  KIMVMVEALKEVEEGHNTLDDRIEIKETGISY-LSLIRDLSISSYTLKDLIILMMTANDY 103

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI-------YKNASGLHDKNQITTARDQ 194
                    + G EK     ++N+  K+G+ +T        +        K+ +T+ RD 
Sbjct: 104 TAINTL-LNLFGLEK-----INNRIDKMGLLDTKVQRKMLDFYAIE--KGKDNVTSIRDM 155

Query: 195 -AILGILLRKNFPQYYKY--FSIRKFRYR--NRIITNH 227
             IL  +  ++  +Y +   FS+   +Y+   R + N+
Sbjct: 156 SNILERIYNRSVFKYREISDFSVEMLKYQRVGRGVRNY 193


>gi|295101639|emb|CBK99184.1| Beta-lactamase class C and other penicillin binding proteins
           [Faecalibacterium prausnitzii L2-6]
          Length = 320

 Score = 41.4 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 12/122 (9%)

Query: 57  IVIDVNKNQMTGF------KQDEPRYPASLTK-MMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           IVI +   Q+               + AS+TK +++  I    ++   +    +I +   
Sbjct: 24  IVI-LEAGQIVFEEYFGNSNSKSKIHIASVTKSILSALIGI-AIEKGYIKSTEEIVMGYF 81

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF-GEFISGSEKKFAILMSNKAKK 168
               + S   ++     T +  +      S ND S        S    +FA+    +  +
Sbjct: 82  PEYTSISSNGVR--EKVTIQNLLTMTAPYSFNDWSEPLEAFCTSPDWIEFALQEMGQNGE 139

Query: 169 IG 170
           IG
Sbjct: 140 IG 141


>gi|289667228|ref|ZP_06488303.1| beta lactamase [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 297

 Score = 41.4 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 29/90 (32%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ++D       G +QDE     S  K +    + + +   KL L  ++ +  +   +    
Sbjct: 55  LLDSATGWHLGQRQDERFPMCSTFKFVLAAAVLQRVDQGKLMLAQRVKIRASDMLEYAPV 114

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAF 147
                    +  +   A +  S N  +   
Sbjct: 115 TERHIGGSLSVGELCRATMIYSDNPAANLL 144


>gi|56554771|gb|AAV97956.1| CTX-M type extended spectrum beta-lactamase [Klebsiella pneumoniae]
          Length = 291

 Score = 41.4 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 62/162 (38%), Gaps = 18/162 (11%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHA-KPKYSSI-----------VID-VNKNQMTGFK 70
           +QR +      + L +    + ++ +A + K +++           +ID  +  Q+   +
Sbjct: 6   VQRMMFAAAACIPLLLGSAPLYAQTNAVQQKLAALEKSSGGRLGVPLIDTADNTQVLY-R 64

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTYFTTE 129
            DE     S +K+M    + +  +++K  LN  + + K A   N + +  K      T  
Sbjct: 65  GDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGTMTLA 123

Query: 130 QGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
           +   A +  S N         +   G    FA  + ++  ++
Sbjct: 124 ELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|24158842|pdb|1LHY|A Chain A, Crystal Structure Of Tem-30 Beta-Lactamase At 2.0 Angstrom
          Length = 263

 Score = 41.4 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 17  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 76

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 77  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 134

Query: 167 KKI 169
            ++
Sbjct: 135 TRL 137


>gi|11514176|pdb|1FQG|A Chain A, Molecular Structure Of The Acyl-Enzyme Intermediate In
           Tem- 1 Beta-Lactamase
          Length = 263

 Score = 41.4 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 55/145 (37%), Gaps = 7/145 (4%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 17  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 76

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 77  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 134

Query: 167 KKIGMQNTIYKNASGLHDKNQITTA 191
            ++   N     A    +++    A
Sbjct: 135 TRLDRWNPELNEAIPNDERDTTMPA 159


>gi|7766856|pdb|1ESU|A Chain A, S235a Mutant Of Tem1 Beta-Lactamase
          Length = 263

 Score = 41.4 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 17  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 76

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 77  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 134

Query: 167 KKI 169
            ++
Sbjct: 135 TRL 137


>gi|256832421|ref|YP_003161148.1| beta-lactamase [Jonesia denitrificans DSM 20603]
 gi|256685952|gb|ACV08845.1| beta-lactamase [Jonesia denitrificans DSM 20603]
          Length = 279

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 39/135 (28%), Gaps = 22/135 (16%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE---QGILA 134
           AS+TK++T   +   LQ   L L T        A    S +          E        
Sbjct: 39  ASVTKLLTSVAVLVALQDGALTLTTV-------AGPPGSTVRHVLAHTAGYEFDTDATRG 91

Query: 135 LI----TRSAND---VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
                   S      ++    + +      +   +    + +GM +T   + SG      
Sbjct: 92  APGERRMYSNTGFEVLADVVAQHVGQDFPSYVRDV--VLQPLGMTHT---DVSGSPAAGA 146

Query: 188 ITTARDQAILGILLR 202
            +T  D A     L 
Sbjct: 147 QSTVADLARFAHELL 161


>gi|118469257|ref|YP_888510.1| penicillin binding protein transpeptidase domain-containing protein
           [Mycobacterium smegmatis str. MC2 155]
 gi|118170544|gb|ABK71440.1| Penicillin binding protein transpeptidase domain protein
           [Mycobacterium smegmatis str. MC2 155]
          Length = 648

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/143 (10%), Positives = 38/143 (26%), Gaps = 46/143 (32%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-----------------------PRYPA 78
           + MA +       S++V+D    ++     D                        P  P 
Sbjct: 295 VQMAKDASGAKNVSAVVLDAKTGEVLAMSNDNTFDPSQDIGRQADRQMGNPSVSSPFEPG 354

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI-LALIT 137
           S+ K++T       +++   + +  + V   +                T        ++ 
Sbjct: 355 SVNKIVTA---AAAIENGLTNPDEVLQV-PGSIHMGG----------VTVRDAWNHGVMP 400

Query: 138 R--------SANDVSTAFGEFIS 152
                    S+N  +    + + 
Sbjct: 401 YTTTGVFGKSSNVGTLMLAQRVG 423


>gi|37575400|gb|AAQ93652.1| RDfusion [Ribosome display vector pRDV]
          Length = 581

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 29  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 88

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 89  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 146

Query: 167 KKI 169
            ++
Sbjct: 147 TRL 149


>gi|21465759|pdb|1JWV|A Chain A, Crystal Structure Of G238a Mutant Of Tem-1 Beta-Lactamase
           In Complex With A Boronic Acid Inhibitor (Sefb4)
          Length = 263

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 17  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 76

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 77  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 134

Query: 167 KKI 169
            ++
Sbjct: 135 TRL 137


>gi|260578436|ref|ZP_05846350.1| PBP4 family D-alanyl-D-alanine carboxypeptidase, serine-type
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603458|gb|EEW16721.1| PBP4 family D-alanyl-D-alanine carboxypeptidase, serine-type
           [Corynebacterium jeikeium ATCC 43734]
          Length = 444

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 49  HAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMT---LYIIFEY 92
            A    S+ V DV   ++   K +  +  PAS TK+ T     +  + 
Sbjct: 73  PALGVLSASVTDVETGEVLWAKDENRKLTPASSTKLYTAAAAILALDE 120


>gi|226192761|pdb|3GMW|A Chain A, Crystal Structure Of Beta-Lactamse Inhibitory Protein-I
           (Blip-I) In Complex With Tem-1 Beta-Lactamase
 gi|226192763|pdb|3GMW|C Chain C, Crystal Structure Of Beta-Lactamse Inhibitory Protein-I
           (Blip-I) In Complex With Tem-1 Beta-Lactamase
          Length = 261

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 15  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 74

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 75  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 132

Query: 167 KKI 169
            ++
Sbjct: 133 TRL 135


>gi|212531167|ref|XP_002145740.1| D-aminoacylase, putative [Penicillium marneffei ATCC 18224]
 gi|210071104|gb|EEA25193.1| D-aminoacylase, putative [Penicillium marneffei ATCC 18224]
          Length = 414

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           D   + AS TK+MT     + ++   L L+  +
Sbjct: 58  DTTMWIASCTKLMTAISAMQCVERGLLKLDEDV 90


>gi|55822690|ref|YP_141131.1| hypothetical protein str0721 [Streptococcus thermophilus CNRZ1066]
 gi|55738675|gb|AAV62316.1| conserved hypothetical protein [Streptococcus thermophilus
           CNRZ1066]
          Length = 331

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 66/209 (31%), Gaps = 34/209 (16%)

Query: 84  MTL---------YIIFEYLQSKKLHLNTQIPV--SKTAATQNPSKLYLKEKTYFTTEQGI 132
           MT           ++ + +   KL L  +  +  ++        K         T  +  
Sbjct: 113 MTAGSTYKLPLNMLVMDEVNRGKLSLTERFDINNTEYEYQGEHDKYVASFGGAMTIPEMQ 172

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
              +  S N  + A  E + G EK F  ++    K  G   T      G    N+ TT  
Sbjct: 173 EYSLVYSENTPAYALAERLGGMEK-FYGMLDKYGKSKGKVKT--IQMHG----NKTTTDY 225

Query: 193 DQAILGIL--LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF 250
              +L  L   ++N+     Y       + N     +   L         K GY R +  
Sbjct: 226 YIQVLDYLWKHQENYKDILHYIGE---SFPNEYYKTYLPGLTIYQ-----KPGYVREALN 277

Query: 251 NIVTSLRYKDDPIVAVV----MGMPTSQE 275
             V ++  +D P +  +    +G  T + 
Sbjct: 278 --VDAIVMEDTPYMVAIYTGYLGGSTEES 304


>gi|319947360|ref|ZP_08021593.1| peptidase family S11 [Streptococcus australis ATCC 700641]
 gi|319746602|gb|EFV98862.1| peptidase family S11 [Streptococcus australis ATCC 700641]
          Length = 350

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 11/83 (13%)

Query: 84  MTL---------YIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGI 132
           MT           ++ + + + KL+L  +  ++ T                   T     
Sbjct: 133 MTAGSTYKLPLNMLVVDEVDAGKLNLTDEFDITNTYYEYLGEHDNYVAAFGGAMTIPDMQ 192

Query: 133 LALITRSANDVSTAFGEFISGSE 155
              +  S N  + A  +   G +
Sbjct: 193 RYSLVYSENTPAYALADRFGGMD 215


>gi|312215209|emb|CBX95162.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1051

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 8/62 (12%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQI-------PVSKTAATQNPSKLYLKEKTYFTTE 129
            AS TK++T   + + ++  K+ L+           +S+    ++      +EK   T  
Sbjct: 703 IASCTKLVTAIAVLQLVEQGKIPLDDTAFVKKVIPEISEKKVFEDGVNGVPQEKD-VTVR 761

Query: 130 QG 131
             
Sbjct: 762 ML 763


>gi|121485909|gb|ABM54868.1| extended-spectrum beta-lactamase VEB-4 [Proteus mirabilis]
          Length = 299

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 85/268 (31%), Gaps = 34/268 (12%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASE---------LHAKPKYSSIVIDVNKNQ--MTGFK 70
           + I + I L+   LF +I+  +  ++         L AK     + I  N N+       
Sbjct: 1   MKIVKRILLVLLSLFFTIVYSNAQADNLTLKIENVLKAKNARIGVAI-FNSNEKDTLKIN 59

Query: 71  QDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTY 125
            D      S+ K  +     +   +    L    +I ++         +P K      T 
Sbjct: 60  NDFHFPMQSVMKFPI--ALAVLSEIDKGNLSFEQKIEITPQDLLPKMWSPIKEEFPNGTT 117

Query: 126 FTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
            T EQ +   ++ S N       + I G  S +KF          I              
Sbjct: 118 LTIEQILNYTVSESDNIGCDILLKLIGGTDSVQKFLNANHFTDISIKANEEQMHKDWNTQ 177

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH----NKLLNKMH--NI 237
            +N  T       +  LL   +    +  S + + +  +I+       N+L  ++    I
Sbjct: 178 YQNWATP----TAMNKLLIDTYNNKNQLLSKKSYDFIWKIMRETTTGSNRLKGQLPKNTI 233

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              KTG    SG N   +    D  ++ 
Sbjct: 234 VAHKTGT---SGINNGIAAATNDVGVIT 258


>gi|327394729|dbj|BAK12151.1| penicillin-binding protein AmpH [Pantoea ananatis AJ13355]
          Length = 387

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           ++D     ASL+K+MT  ++ +  +  ++ L+   P+SK A
Sbjct: 76  QKDSLIRIASLSKLMTSEVMVKMAERGEIRLDD--PLSKYA 114


>gi|40737710|gb|AAR89358.1| beta-lactamase TEM-127 [Escherichia coli]
          Length = 286

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDNVTRL 160


>gi|116627594|ref|YP_820213.1| hypothetical protein STER_0765 [Streptococcus thermophilus LMD-9]
 gi|116100871|gb|ABJ66017.1| Uncharacterized conserved protein [Streptococcus thermophilus
           LMD-9]
          Length = 459

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 11/84 (13%)

Query: 84  MTL---------YIIFEYLQSKKLHLNTQIPV--SKTAATQNPSKLYLKEKTYFTTEQGI 132
           MT           ++ + +   KL L  +  +  ++        K         T  +  
Sbjct: 241 MTAGSTYKLPLNMLVMDEVNRGKLSLTERFDINNTEYEYQGEHDKYVASFGGAMTIPEMQ 300

Query: 133 LALITRSANDVSTAFGEFISGSEK 156
              +  S N  + A  E + G EK
Sbjct: 301 EYSLVYSENTPAYALAERLGGMEK 324


>gi|312278114|gb|ADQ62771.1| Uncharacterized conserved protein [Streptococcus thermophilus ND03]
          Length = 459

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 11/84 (13%)

Query: 84  MTL---------YIIFEYLQSKKLHLNTQIPV--SKTAATQNPSKLYLKEKTYFTTEQGI 132
           MT           ++ + +   KL L  +  +  ++        K         T  +  
Sbjct: 241 MTAGSTYKLPLNMLVMDEVNRGKLSLTERFDINNTEYEYQGEHDKYVASFGGAMTIPEMQ 300

Query: 133 LALITRSANDVSTAFGEFISGSEK 156
              +  S N  + A  E + G EK
Sbjct: 301 EYSLVYSENTPAYALAERLGGMEK 324


>gi|312864103|ref|ZP_07724338.1| conserved hypothetical protein [Streptococcus vestibularis F0396]
 gi|311100335|gb|EFQ58543.1| conserved hypothetical protein [Streptococcus vestibularis F0396]
          Length = 430

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT------AATQN 114
           ++ +++     ++  Y AS+ K+  LY   E L  KKL L+ +   +        A   +
Sbjct: 215 LDTDRIAAINDEKSMYAASVAKLGVLYYTQERLSQKKLSLSDEYQYTSAVNGFPGAYDPD 274

Query: 115 PSK--LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
            S     + +   ++ E  + A+   S N  +   G +++     
Sbjct: 275 GSGKISKMPDDKNYSLENLLKAVAQNSDNVATNILGYYVANQYDN 319


>gi|302865639|ref|YP_003834276.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Micromonospora aurantiaca ATCC 27029]
 gi|302568498|gb|ADL44700.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Micromonospora aurantiaca ATCC 27029]
          Length = 527

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 57  IVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSK 96
           +V+D    +    +    R  PAS TK++T     E L   
Sbjct: 60  VVVDTATGRTLYDRNGTRRLIPASNTKLLTSAAAMELLGPG 100


>gi|146260089|gb|ABQ14392.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + + R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPKERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|196230252|ref|ZP_03129115.1| beta-lactamase [Chthoniobacter flavus Ellin428]
 gi|196225849|gb|EDY20356.1| beta-lactamase [Chthoniobacter flavus Ellin428]
          Length = 369

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 44  MASELHAKPKYSSIVIDVNKN-QMTGFKQ----DEPRYPASLTKMMTLYIIFEYLQSKKL 98
           + +   A  ++  +VI+     +  G  +    D+  +  S TK MT  +    +   KL
Sbjct: 35  LPALAAAAMRHGKLVINAATGVRKLGSDELVTTDDKWHLGSCTKSMTAMLAGMMVDEGKL 94

Query: 99  HLNTQI 104
             +T I
Sbjct: 95  SWHTTI 100


>gi|254439950|ref|ZP_05053444.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Octadecabacter antarcticus 307]
 gi|198255396|gb|EDY79710.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Octadecabacter antarcticus 307]
          Length = 509

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 57  IVIDVNKNQMTGFKQDE--PRYPASLTKMMTLYIIFEYL 93
           ++ D +  +M   + D      PAS+TK +T     + L
Sbjct: 66  VLADADTGEML-EQIDAGIALPPASVTKAVTALYALDAL 103


>gi|158334704|ref|YP_001515876.1| beta-lactamase [Acaryochloris marina MBIC11017]
 gi|158304945|gb|ABW26562.1| beta-lactamase, putative [Acaryochloris marina MBIC11017]
          Length = 312

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 56/166 (33%), Gaps = 25/166 (15%)

Query: 17  YPYGSIYIQRNIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQM 66
           + Y +   +  I ++G I  L  + +  +           E  A P  +S+++  +   +
Sbjct: 7   FEYKNFLKRGVITVLGTIFLLICLGLPYSEAVAVPSKLMDEFDALPGETSVLVLRDNEAV 66

Query: 67  TGFKQDEPRYPAS------LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-- 118
                ++P   AS      L K+       + + + +   +  I + K      PS +  
Sbjct: 67  ASLNAEKPLAIASAFKLQVLAKL------QQQINAGQHSWDEVIQL-KPEWKSIPSGILQ 119

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
              ++   T +     +I+ S N  +    + +       A   + 
Sbjct: 120 DWPDQAPLTLQTLASLMISVSDNTAADILIQVVGRDTLATASPRNQ 165


>gi|239931520|ref|ZP_04688473.1| beta-lactamase [Streptomyces ghanaensis ATCC 14672]
 gi|291439896|ref|ZP_06579286.1| beta-lactamase [Streptomyces ghanaensis ATCC 14672]
 gi|291342791|gb|EFE69747.1| beta-lactamase [Streptomyces ghanaensis ATCC 14672]
          Length = 275

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 55/157 (35%), Gaps = 17/157 (10%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDE-PRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           P  ++  +  +   + G       R+P AS+TK +  Y +    +   + L+        
Sbjct: 15  PTAAAGAVRAD-GTVLGTHGPTGHRFPLASVTKPLAAYAVLVAYEEGAIELDEP------ 67

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRS-----ANDVSTAFGEFIS-GSEKKFAILMS 163
           A  +  +  +L   T                    +N      G+ ++  +E  FA  + 
Sbjct: 68  AGPEGSTVRHLLAHTSGLLFDEHRVTSAPGERRLYSNAGFEQLGDHVARATEIPFAEYLR 127

Query: 164 NKAKK-IGMQNTIYKNASGLHDKNQITTARDQAILGI 199
               + +GM +T  +N +G   K+ ++T  D      
Sbjct: 128 QAVLEPLGMTSTSLEN-TGSPAKDAVSTVDDLLRFAA 163


>gi|224460107|gb|ACN43604.1| extended-spectrum beta-lactamase CTX-M-2 [Pseudomonas aeruginosa]
          Length = 242

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 47  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 105

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 106 HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 156


>gi|56554767|gb|AAV97954.1| CTX-M type extended spectrum beta-lactamase [Klebsiella pneumoniae]
          Length = 291

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGRRLGVPLIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|260905548|ref|ZP_05913870.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
           anine-endopeptidase [Brevibacterium linens BL2]
          Length = 485

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 7/93 (7%)

Query: 60  DVNKNQMTGFKQ-DEPRYPASLTKMMT---LYIIFEYLQSKKLHLNTQI-PVSKTAATQN 114
           D   + +   K  ++PR PAS+TK++T     +       K+L   TQ  P + T   Q 
Sbjct: 108 DGLSDDILYAKNENKPRTPASVTKVLTGSAALLTI--GGEKRLSTTTQFDPATSTVTLQG 165

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
                L             A +   A   + + 
Sbjct: 166 GGDSLLGAGESQPGAVNGHAGLATLAQQTAESL 198


>gi|126462996|ref|YP_001044110.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Rhodobacter sphaeroides ATCC 17029]
 gi|126104660|gb|ABN77338.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Rhodobacter sphaeroides ATCC 17029]
          Length = 485

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 11/36 (30%), Gaps = 1/36 (2%)

Query: 53 KYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLY 87
            + +V D     +           PAS  K +T  
Sbjct: 55 AVAYVVADARSGTVLEAANAALRLPPASTAKTVTAL 90


>gi|302890421|ref|XP_003044095.1| hypothetical protein NECHADRAFT_77082 [Nectria haematococca mpVI
           77-13-4]
 gi|256725014|gb|EEU38382.1| hypothetical protein NECHADRAFT_77082 [Nectria haematococca mpVI
           77-13-4]
          Length = 409

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ--DEPRY-PASLTKMMTLYIIFEY 92
             S+ ++S  SEL  +   SSI  D +  ++    +  D+  Y  AS TK++T     + 
Sbjct: 28  CASVTVVSATSELFHQETVSSIDQDDD-GKLVHKHECADDRVYWFASCTKLVTAIACMQL 86

Query: 93  LQSKKLHLNT 102
           ++ KKL L+ 
Sbjct: 87  VEQKKLTLDD 96


>gi|56554769|gb|AAV97955.1| CTX-M type extended spectrum beta-lactamase [Klebsiella pneumoniae]
          Length = 291

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVPLIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|323709063|gb|ADY02546.1| beta-lactamase CTX-M-102 [Escherichia coli]
          Length = 291

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|260914824|gb|ACX54273.1| beta-lactamase blaCTX-M-5 [Enterobacter cloacae]
          Length = 241

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 3/111 (2%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+           
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 114

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
                 T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 115 HVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 165


>gi|254518499|ref|ZP_05130555.1| beta-lactamase [Clostridium sp. 7_2_43FAA]
 gi|226912248|gb|EEH97449.1| beta-lactamase [Clostridium sp. 7_2_43FAA]
          Length = 259

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 60/149 (40%), Gaps = 15/149 (10%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119
           D+    + G+ ++     A   K+     + + ++ KK+    +I +           ++
Sbjct: 21  DLKSGYIYGYNENVQMVAAGCMKLPIAVSLIKSVEDKKIDFLDKIKIDGKDKVYGTGIIH 80

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
              +  +T  + ++A++ +S N  +      I G EK     ++   K++G++NT+    
Sbjct: 81  EFNEREYTVFELLVAMLIQSDNTAANKI-IDIVGMEK-----INKDIKEMGLKNTVLNRK 134

Query: 180 SGLHDK-------NQITTARDQAILGILL 201
           +   D+         IT A D A +   L
Sbjct: 135 T--TDERKTKSEVENITCALDLARIWRHL 161


>gi|58119477|gb|AAW65395.1| extended-spectrum beta-lactamase CTX-M-14 [Proteus mirabilis]
          Length = 279

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|51892053|ref|YP_074744.1| beta-lactamase [Symbiobacterium thermophilum IAM 14863]
 gi|51855742|dbj|BAD39900.1| beta-lactamase [Symbiobacterium thermophilum IAM 14863]
          Length = 272

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/130 (10%), Positives = 36/130 (27%), Gaps = 13/130 (10%)

Query: 61  VNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAATQNPSKL 118
           +  +++      D+    AS  K+   Y +       +L L+    + ++          
Sbjct: 26  LQTDEVIQVGASDDTFPSASTIKLAIFYEVMRQAGEGRLDLSEPRELRTEDKVPGCGVLR 85

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI--- 175
            L              ++  S N  S    + +          ++    ++G+       
Sbjct: 86  DLSPGIRLPLRDLATLMMIISDNTASNMCIDAVG------IESVNRSMDELGLTGLRLRW 139

Query: 176 --YKNASGLH 183
             +   +G  
Sbjct: 140 KFFGAPAGQP 149


>gi|168831186|gb|ACA34904.1| VEB-6 extended-spectrum beta-lactamase [Proteus mirabilis]
          Length = 299

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 85/268 (31%), Gaps = 34/268 (12%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASE---------LHAKPKYSSIVIDVNKNQ--MTGFK 70
           + I + I L+   LF +++  +  ++         L AK     + I  N N+       
Sbjct: 1   MKIVKRILLVLLSLFFTVVYSNAQADNLTLKIENVLKAKNARIGVAI-FNSNEKDTLKIN 59

Query: 71  QDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTY 125
            D      S+ K  +     +   +    L    +I ++         +P K      T 
Sbjct: 60  NDFHFPMQSVMKFPI--ALAVLSEIDKGNLSFEQKIEITPQDLLPKMWSPIKEEFPNGTT 117

Query: 126 FTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
            T EQ +   ++ S N       + I G  S +KF          I              
Sbjct: 118 LTIEQILNYTVSESDNIGCDILLKLIGGTDSVQKFLNANHFTDISIKANEEQMHKDWNTQ 177

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH----NKLLNKMH--NI 237
            +N  T       +  LL   +    +  S + + +  +I+       N+L  ++    I
Sbjct: 178 YQNWATP----TAMNKLLIDTYNNKNQLLSKKSYDFIWKIMRETTTGSNRLKGQLPKNTI 233

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              KTG    SG N   +    D  ++ 
Sbjct: 234 VAHKTGT---SGINNGIAAATNDVGVIT 258


>gi|291618337|ref|YP_003521079.1| AmpH [Pantoea ananatis LMG 20103]
 gi|291153367|gb|ADD77951.1| AmpH [Pantoea ananatis LMG 20103]
          Length = 389

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           ++D     ASL+K+MT  ++ +  +  ++ L+   P+SK A
Sbjct: 78  QKDSLIRIASLSKLMTSEVMVKMAERGEIRLDD--PLSKYA 116


>gi|221640022|ref|YP_002526284.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Rhodobacter sphaeroides KD131]
 gi|221160803|gb|ACM01783.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           precursor [Rhodobacter sphaeroides KD131]
          Length = 507

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 11/36 (30%), Gaps = 1/36 (2%)

Query: 53  KYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLY 87
             + +V D     +           PAS  K +T  
Sbjct: 77  AVAYVVADARSGTVLEAANAALRLPPASTAKTVTAL 112


>gi|56463109|gb|AAV91696.1| beta-lactamase TEM [Escherichia coli]
          Length = 178

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 18  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 77

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 78  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 135

Query: 167 KKI 169
            ++
Sbjct: 136 TRL 138


>gi|83859454|ref|ZP_00952975.1| similar to penicillin-binding protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852901|gb|EAP90754.1| similar to penicillin-binding protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 370

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 4/39 (10%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQ----IPVSKTAAT 112
           ASLTK MT  ++    +   L L+      +  +  A +
Sbjct: 81  ASLTKHMTALMVLSLAEEGHLSLDDPLSRYVEDTPEAWS 119


>gi|146260190|gb|ABQ14425.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 48/115 (41%), Gaps = 5/115 (4%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
             +    ++ +L +    T  +   A IT S N  +      I G ++  A+L +
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTALLHN 144


>gi|325560584|gb|ADZ31262.1| beta-lactamase CTX-M-106 [Escherichia coli]
          Length = 290

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|288940270|ref|YP_003442510.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Allochromatium
          vinosum DSM 180]
 gi|288895642|gb|ADC61478.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Allochromatium
          vinosum DSM 180]
          Length = 409

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 25 QRNIQLMGKILFLSIIMISMA----SELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASL 80
          + +  ++   L+L +   ++A    +++ A P+ S +V +  ++++  ++ +  R PAS 
Sbjct: 18 RPHRLVLIAALWLGLAHTALADDPVAQVRALPQASLLVKERGQDRI-AYQAETARIPAST 76

Query: 81 TKMMTLYIIFE 91
           K++T Y   E
Sbjct: 77 MKLLTAYAALE 87


>gi|13173098|gb|AAK14294.1|AF324834_1 extended spectrum beta-lactamase VEB-1b [Pseudomonas aeruginosa]
          Length = 299

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 86/268 (32%), Gaps = 34/268 (12%)

Query: 22  IYIQRNIQLMGKILFLSI---------IMISMASELHAKPKYSSIVIDVNKNQ--MTGFK 70
           + I + I L+   LF ++         + + + + L AK     + I  N N+       
Sbjct: 1   MKIVKRILLVLLSLFFTVEYSNAQTDNLTLKIENVLKAKNARIGVAI-FNSNEKDTLKIN 59

Query: 71  QDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTY 125
            D      S+ K  +     +   +    L    +I ++       T +P K      T 
Sbjct: 60  NDFHFPMQSVMKFPI--ALAVLSEIDKGNLSFEQKIEITPQDLLPKTWSPIKEEFPNGTT 117

Query: 126 FTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
            T EQ +   ++ S N       + I G  S +KF          I              
Sbjct: 118 LTIEQILNYTVSESDNIGCDILLKLIGGTDSVQKFLNANHFTDISIKANEEQMHKDWNTQ 177

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH----NKLLNKMH--NI 237
            +N  T       +  LL   +    +  S + + +  +I+       N+L  ++    I
Sbjct: 178 YQNWATP----TAMNKLLIDTYNNKNQLLSKKSYDFIWKIMRETTTGSNRLKGQLPKNTI 233

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              KTG    SG N   +    D  ++ 
Sbjct: 234 VAHKTGT---SGINNGIAAATNDVGVIT 258


>gi|5733490|gb|AAD49603.1|AF147463_1 beta-lactamase [Expression vector pNam]
 gi|2623824|gb|AAB86560.1| RTEM-1 beta-lactamase [Shuttle vector pMAL-pIII]
 gi|2654023|gb|AAB87677.1| beta-lactamase [Expression vector pMal-X]
 gi|3983123|gb|AAC83814.1| beta-lactamase [Expression vector pMBP-parallel1]
 gi|15216976|gb|AAK92456.1| beta-lactamase [Retrofitting vector pRetroES]
 gi|129278849|gb|ABO28853.1| beta-lactamase [Cloning vector pD-MAL1]
 gi|259490924|gb|ACW82459.1| beta-lactamase [Cloning vector pLitmus 28C1]
 gi|259490927|gb|ACW82461.1| beta-lactamase [Cloning vector pLitSB3Aek]
          Length = 286

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R 
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERS 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|284989209|ref|YP_003407763.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Geodermatophilus obscurus DSM 43160]
 gi|284062454|gb|ADB73392.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Geodermatophilus obscurus DSM 43160]
          Length = 487

 Score = 41.0 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 10/92 (10%)

Query: 38  SIIMISMASELHAKPKYS----SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEY 92
           + ++    + L A P       + V+DV   ++   +  D P  PAS  K++T       
Sbjct: 97  AAVLADELAPLLASPALGPGVEARVVDVAAGEVLLDQDSDVPSTPASTAKLLTAVAAL-- 154

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKT 124
                L  +T +  +  A +     + +    
Sbjct: 155 ---TTLGPDTTLETTVVAGSAPGEVVLVGGGD 183


>gi|182417182|ref|ZP_02948551.1| beta-lactamase [Clostridium butyricum 5521]
 gi|237667300|ref|ZP_04527284.1| putative beta-lactamase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182379024|gb|EDT76530.1| beta-lactamase [Clostridium butyricum 5521]
 gi|237655648|gb|EEP53204.1| putative beta-lactamase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 258

 Score = 41.0 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 52/147 (35%), Gaps = 11/147 (7%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119
           D+      G+ ++     A   K+       +Y++  K     +I +++         ++
Sbjct: 21  DLESGFCYGYNENVQMTSAGCMKLPIAVSAIKYVEDGKGSFLDKITINEDDKVYGTGIIH 80

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
                 +T  + ++A++ +S N  +    + +          ++   +  G++NT     
Sbjct: 81  EFNNREYTFFELLVAMLIQSDNTAANKLIDIVG------MDTINEDIQSQGLRNTKLNRK 134

Query: 180 SG-----LHDKNQITTARDQAILGILL 201
           +            IT+A D + +   L
Sbjct: 135 TADERAVSSGVENITSALDLSKIWKHL 161


>gi|315940009|gb|ADU56215.1| CTX-M-14 extended-spectrum beta-lactamase [Escherichia coli]
          Length = 291

 Score = 41.0 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHA-----KPKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A     + K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVRQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|67462183|gb|AAV28215.2| beta-lactamase CTX-M-40 [Escherichia coli]
          Length = 290

 Score = 41.0 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP-----KYSSI-----------VID-VNKNQM 66
           ++  ++ M  +    I ++  ++ L+A+      K +++           +ID  +  Q 
Sbjct: 1   MRHRVKRMMLMTTACISLLLGSAPLYAQANDVQQKLAALEKSSGGRLGVALIDTADNAQT 60

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAATQNPSKLYLKEKTY 125
              + DE     S +K+M    + +  +++K  L+ ++ + S      NP        T 
Sbjct: 61  LY-RADERFAMCSTSKVMAAAAVLKQSETQKNVLSQKVEIKSSDLINYNPIAEKHVNGT- 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            T  +   A +  S N         + G +K   FA  + +   ++
Sbjct: 119 MTLAELSAAALQYSDNTAMNKLIAHLGGPDKVTAFARAIGDDTFRL 164


>gi|298369493|ref|ZP_06980810.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282050|gb|EFI23538.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Neisseria sp. oral taxon 014 str. F0314]
          Length = 470

 Score = 41.0 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 51 KPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYL 93
            + S  V D+   ++      DE   PAS  K++T +  F  L
Sbjct: 28 PEEISVYVKDLQSGRIIEEHRADESMNPASTMKLVTAFAAFRAL 71


>gi|255943301|ref|XP_002562419.1| Pc18g05920 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587152|emb|CAP94816.1| Pc18g05920 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 431

 Score = 41.0 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 69  FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            K D     ASLTK+ T       +   KL L+  +
Sbjct: 109 AKMDTIYDMASLTKVFTAVAALRAIDEGKLSLDKSV 144


>gi|164665316|gb|ABY66120.1| CTX-m-14-like beta-lactamase [Escherichia coli]
          Length = 291

 Score = 41.0 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|66932803|gb|AAY58239.1| extended-spectrum beta-lactamase CTX-M-24 [Escherichia coli]
          Length = 283

 Score = 41.0 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|56554765|gb|AAV97953.1| CTX-M type extended spectrum beta-lactamase [Klebsiella pneumoniae]
          Length = 291

 Score = 41.0 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 62/162 (38%), Gaps = 18/162 (11%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHA-KPKYSSI-----------VID-VNKNQMTGFK 70
           +QR +      + L +    + ++ +A + K +++           +ID  +  Q+   +
Sbjct: 6   VQRMMFAAAACIPLLLGSAPLYAQTNAVQQKLAALEKSSGGRLGVALIDTADNTQVLY-R 64

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTYFTTE 129
            DE     S +K+M    + +  +++K  LN  + + K A   N + +  K      T  
Sbjct: 65  GDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGTMTLA 123

Query: 130 QGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
           +   A +  S N         +   G    FA  + ++  ++
Sbjct: 124 ELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|56069565|gb|AAV70602.1| beta lactamase CTX-M-38 [Klebsiella pneumoniae]
          Length = 291

 Score = 41.0 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|18129361|emb|CAD20591.1| beta-lactamase class A [Kluyvera ascorbata]
          Length = 291

 Score = 41.0 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESNKHLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 115 HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 165


>gi|215528084|ref|YP_002332867.1| beta-lactamase CTX-M-24 [Klebsiella pneumoniae]
 gi|283826843|ref|YP_003377714.1| extended-spectrum beta-lactamase CTX-M-24 [Shigella sonnei]
 gi|23953863|gb|AAN38836.1| beta-lactamase CTX-M-24 [Klebsiella pneumoniae]
 gi|68673193|emb|CAJ00132.1| CTX-M-24 beta-lactamase [Escherichia coli]
 gi|85062591|gb|ABC69157.1| CTX-M type extended-spectrum beta-lactamase [Klebsiella pneumoniae]
 gi|125634072|gb|ABN48310.1| beta-lactamase CTX-M-24 [Escherichia coli]
 gi|147712678|gb|ABQ45876.1| extended-spectrum beta-lactamase CTX-M-24 [Proteus mirabilis]
 gi|165928604|gb|ABY74372.1| beta-lactamase CTX-M-24 [Klebsiella pneumoniae]
 gi|197215895|gb|ACH53184.1| CTX-M-24 beta-lactamase [Escherichia coli]
 gi|214011885|gb|ACJ61681.1| CTX extended-spectrum beta-lactamase [Escherichia coli]
 gi|221149284|gb|ACM04465.1| CTX-M-24 extended-spectrum beta-lactamase [Escherichia coli]
 gi|221149287|gb|ACM04466.1| CTX-M-24 extended-spectrum beta-lactamase [Escherichia coli]
 gi|259017812|gb|ACV89492.1| CTX-M-24 extended-spectrum beta-lactamase [Escherichia coli]
 gi|259017814|gb|ACV89493.1| CTX-M-24 extended-spectrum beta-lactamase [Escherichia coli]
 gi|282192950|gb|ADA81878.1| extended-spectrum beta-lactamase [Escherichia coli]
 gi|282192952|gb|ADA81879.1| extended-spectrum beta-lactamase [Escherichia coli]
 gi|283466735|emb|CBI12393.1| extended-spectrum beta-lactamase CTX-M-24 [Shigella sonnei]
          Length = 291

 Score = 41.0 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|295837285|ref|ZP_06824218.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Streptomyces sp. SPB74]
 gi|295826451|gb|EFG64864.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Streptomyces sp. SPB74]
          Length = 457

 Score = 41.0 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 55 SSIVIDVNKN-QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSK 96
          ++ V+D+    Q+ G +      PAS+TK+ T     + L   
Sbjct: 38 AASVVDLTSGEQVYGDRATASATPASVTKIATAVAALDALGPG 80


>gi|288576342|ref|ZP_05978622.2| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Neisseria mucosa ATCC 25996]
 gi|288565699|gb|EFC87259.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Neisseria mucosa ATCC 25996]
          Length = 480

 Score = 41.0 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 10/116 (8%)

Query: 51  KPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
             + S  V +++  ++      D    PAS  K++T +  FE L  K     T+   +  
Sbjct: 40  PDEISVYVQELDSGKVIESHRADASVNPASTMKLVTAFSAFEAL-GKDYRWTTEFKTNGH 98

Query: 110 AA--TQNPSKLYLKEKTYFTTEQGILALITRSAN------DVSTAFGEFISGSEKK 157
               +      ++        + G+   + +  N        S      + G+   
Sbjct: 99  IEGDSLEGDIYWVGSGDPVFDQDGLKDALQQLQNKGIRHIKGSLVLDRHLWGTVGN 154


>gi|60359800|dbj|BAD90119.1| beta-lactamase CTX-M-63 [Klebsiella pneumoniae]
 gi|189304727|gb|ACD86346.1| blaCTX-M-63 [Morganella morganii]
          Length = 290

 Score = 41.0 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP-----KYSSI-----------VID-VNKNQM 66
           ++  ++ M  +    I ++  ++ L+A+      K +++           +ID  +  Q 
Sbjct: 1   MRHRVKRMMLMTTACISLLLGSAPLYAQANDVQQKLAALEKSSGGRLGVALIDTADNAQT 60

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAATQNPSKLYLKEKTY 125
              + DE     S +K+M    + +  +++K  L+ ++ + S      NP        T 
Sbjct: 61  LY-RADERFAMCSTSKVMAAAAVLKQSETQKNVLSQKVEIKSSDLINYNPIAEKHVNGT- 118

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            T  +   A +  S N         + G +K   FA  + +   ++
Sbjct: 119 MTLAELSAAALQYSDNTAMNKLIAHLGGPDKVTAFARAIGDDTFRL 164


>gi|302545925|ref|ZP_07298267.1| beta-lactamase [Streptomyces hygroscopicus ATCC 53653]
 gi|302463543|gb|EFL26636.1| beta-lactamase [Streptomyces himastatinicus ATCC 53653]
          Length = 299

 Score = 41.0 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 65  QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           Q    + D     ASLTK+ T  +    L+  ++ L+ Q+
Sbjct: 82  QWVPARADTVFDLASLTKLFTAIVAVGALERGEIELDAQV 121


>gi|217973250|ref|YP_002358001.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Shewanella baltica OS223]
 gi|217498385|gb|ACK46578.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Shewanella baltica OS223]
          Length = 502

 Score = 41.0 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 4/39 (10%)

Query: 52 PKYSSIV---IDVNKNQMTGFKQDEPRY-PASLTKMMTL 86
          P++S I    +D++ NQ+   +Q E  + PAS  K++T 
Sbjct: 48 PRHSQIALLAMDMSSNQVIFSQQAETLFIPASTQKLLTA 86


>gi|332559029|ref|ZP_08413351.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Rhodobacter sphaeroides WS8N]
 gi|332276741|gb|EGJ22056.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Rhodobacter sphaeroides WS8N]
          Length = 485

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 11/36 (30%), Gaps = 1/36 (2%)

Query: 53 KYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLY 87
            + +V D     +           PAS  K +T  
Sbjct: 55 AVAYVVADARSGTVLEAANAALRLPPASTAKTVTAL 90


>gi|322377897|ref|ZP_08052385.1| beta-lactamase [Streptococcus sp. M334]
 gi|321281073|gb|EFX58085.1| beta-lactamase [Streptococcus sp. M334]
          Length = 422

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 9/124 (7%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           M SE + K  +S  V  +   +  G  QDE  Y AS+ K+  LY   E +      L+T 
Sbjct: 190 MLSEKYQKDSFSIYVKQLTTGKEAGINQDEKMYAASVLKLPYLYYTQEKINEGLYQLDTT 249

Query: 104 IPVSKTAATQNPSKLYLKEKT--------YFTTEQGILALITRSANDVSTAFGEFISG-S 154
           +           S       +         ++ +  I  +   S N      G +IS  S
Sbjct: 250 VKYVSAVNDFPGSYKPEGSGSLPKKEDNKEYSLKDLITKVAKESDNVAHNLLGYYISNQS 309

Query: 155 EKKF 158
           +  F
Sbjct: 310 DTTF 313


>gi|320589781|gb|EFX02237.1| beta-lactamase family protein [Grosmannia clavigera kw1407]
          Length = 440

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           D     ASLTK+ T  I  + + + K+ L   + 
Sbjct: 116 DTIYDMASLTKLFTTIIALQQMDAGKMRLTDNVT 149


>gi|120608891|ref|YP_968569.1| beta-lactamase [Acidovorax citrulli AAC00-1]
 gi|120587355|gb|ABM30795.1| beta-lactamase [Acidovorax citrulli AAC00-1]
          Length = 436

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 24/89 (26%), Gaps = 1/89 (1%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKL 118
           D+           EP Y AS  K+     +    +     L+T + +             
Sbjct: 85  DLETGASASLHGTEPWYLASSIKVPVAIAVLRGAERGDFTLDTPLTLRAADYVDGAGPTN 144

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAF 147
                T  T    +  +I  S N  S   
Sbjct: 145 GRPVGTPLTVRYLLEQMIIYSDNTASDML 173


>gi|328869084|gb|EGG17462.1| beta-lactamase-type transpeptidase fold containing protein
           [Dictyostelium fasciculatum]
          Length = 342

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 55/168 (32%), Gaps = 36/168 (21%)

Query: 66  MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTY 125
           +  +  +  +  AS  K+  L  + + +Q+    L+T I  S                  
Sbjct: 87  IESYNANNSQQTASTIKLWVLIAVLQDVQNGLYSLDTVIECS---------------GQN 131

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI-----YKNAS 180
            T    +  +I  S N  +         +++     ++     +GM N+      +    
Sbjct: 132 LTINGCLALMIGISDNCATFDM------TKQTTLTHVNEVFASLGMTNSQFHEWCFTTCP 185

Query: 181 GLHDK---------NQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
           G             + + ++ D    G+ L  +F    + ++ + ++Y
Sbjct: 186 GYTSPCPNNDGTGLDNVLSSHDVVH-GLQLLHSFEALPENYTYQAYKY 232


>gi|326791283|ref|YP_004309104.1| penicillin-binding protein, 1A family [Clostridium lentocellum DSM
           5427]
 gi|326542047|gb|ADZ83906.1| penicillin-binding protein, 1A family [Clostridium lentocellum DSM
           5427]
          Length = 887

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 28/131 (21%)

Query: 49  HAKPKYSSIVIDVNKNQM------------TGFKQDE--PRYPASLTKMMTLYIIFEYLQ 94
             +P+ S +++D    Q+              F       R P S  K++  Y     L 
Sbjct: 416 QPQPQASFVLMDYATGQVKALSGGRGEKSNLSFNYATQAKRQPGSTFKVLAAY--APALD 473

Query: 95  SKKLHLNTQIPVSKTA-------ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
             +L   ++I +++          T +P       +  +T  Q     I  S N ++   
Sbjct: 474 MGELSPGSEI-INEHVSYKLGDGTTWSPKNWDGNYEGTYTVRQA----IANSMNVIAVKT 528

Query: 148 GEFISGSEKKF 158
                G E  F
Sbjct: 529 AVDCVGIENAF 539


>gi|71906063|ref|YP_283650.1| D-alanyl-D-alanine carboxypeptidase PBP3 [Dechloromonas aromatica
           RCB]
 gi|71845684|gb|AAZ45180.1| D-Ala-D-Ala carboxypeptidase PBP3, Serine peptidase, MEROPS family
           S13 [Dechloromonas aromatica RCB]
          Length = 479

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 10/92 (10%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASELHAKPKYS-------SIVIDV-NKNQ-MTGFKQD 72
           ++I+R   L+   + L+ +   +   +    K +       ++VI   +    +      
Sbjct: 1   MFIKRLAPLILAGISLAALADGLPPSVLGALKAAQIPAKNVAVVIQAVDSGSPLVAHNAS 60

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +   PAS+ K++T Y   + L        T +
Sbjct: 61  QAMNPASVMKLVTTYAALDLLGPA-YTWKTTV 91


>gi|311745239|ref|ZP_07719024.1| putative beta-lactamase [Algoriphagus sp. PR1]
 gi|126577765|gb|EAZ81985.1| putative beta-lactamase [Algoriphagus sp. PR1]
          Length = 301

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 77/227 (33%), Gaps = 38/227 (16%)

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI-PVSKTAATQNPSKLYL----- 120
              + DE  + AS  K+  +  +F+  +  KL+L+  I  V++  +  + S   +     
Sbjct: 59  LMIQADEEFHAASTMKVPVMIELFKQEEEGKLNLDDSILLVNEFKSIVDGSSYSMDIGDD 118

Query: 121 -------KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
                  K  T  +    +  +IT S+N  +    E +       A  ++   + +G   
Sbjct: 119 SDDIIYNKIGTKVSLNDLMYNMITVSSNLATNVLIELVD------AKKVTATMRDLGA-- 170

Query: 174 TIYKNASGLHDK-------NQITTARDQAILGILLRKNFP----QYYKYFSIRKFRYRNR 222
              +   G+ D+       +  TTARD   +   +  N         +  SI K +  N 
Sbjct: 171 AKIEVLRGVEDQKAYDLGLSNSTTARDLLEIMEAIALNEAGTQEDCQEMISILKDQKFNE 230

Query: 223 IITNHNKLLNKMHNIDGI-KTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
           II  H         +    KTG       +            V V++
Sbjct: 231 IIPFH-----LPEGVSVAHKTGSITGVHHDAGIVYLPDGRSYVLVLL 272


>gi|30409762|gb|AAO61597.1| beta-lactamase CTX-M-27 [Escherichia coli]
 gi|164665312|gb|ABY66118.1| CTX-m-14-like beta-lactamase [Escherichia coli]
 gi|196127864|gb|ACG70200.1| CTX-M-27 beta-lactamase [Escherichia coli]
 gi|213133726|gb|ACJ43262.1| CTX-M-27 extended-spectrum beta-lactamase [Escherichia coli]
 gi|213133728|gb|ACJ43263.1| CTX-M-27 extended-spectrum beta-lactamase [Escherichia coli]
 gi|213133732|gb|ACJ43265.1| CTX-M-27 extended-spectrum beta-lactamase [Escherichia coli]
 gi|221149289|gb|ACM04467.1| CTX-M-27 extended-spectrum beta-lactamase [Escherichia coli]
 gi|260779990|gb|ACX50624.1| CTX-M-27 extended-spectrum beta-lactamase [Escherichia coli]
 gi|260779994|gb|ACX50626.1| CTX-M-27 extended-spectrum beta-lactamase [Escherichia coli]
 gi|282192948|gb|ADA81877.1| extended-spectrum beta-lactamase [Escherichia coli]
          Length = 291

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|238753711|ref|ZP_04615072.1| Penicillin-binding protein ampH [Yersinia ruckeri ATCC 29473]
 gi|238707947|gb|EEQ00304.1| Penicillin-binding protein ampH [Yersinia ruckeri ATCC 29473]
          Length = 381

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           +QD     AS+TK+MT  I+ +     KL L   + 
Sbjct: 80  RQDSLIRIASITKLMTSEIMVKLADEGKLKLTDPLK 115


>gi|18656798|gb|AAL77984.1| extended-spectrum beta-lactamase CTX-M-14 [Serratia liquefaciens]
          Length = 264

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 61/162 (37%), Gaps = 18/162 (11%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHA-KPKYSSI-----------VID-VNKNQMTGFK 70
           +QR +      + L +    + ++  A + K +++           +ID  +  Q+   +
Sbjct: 1   VQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY-R 59

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTYFTTE 129
            DE     S +K+M    + +  +++K  LN  + + K A   N + +  K      T  
Sbjct: 60  GDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGTMTLA 118

Query: 130 QGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
           +   A +  S N         +   G    FA  + ++  ++
Sbjct: 119 ELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 160


>gi|289663341|ref|ZP_06484922.1| beta lactamase [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 297

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ---N 114
           ++D       G +QDE     S  K +    + + +   KL L  ++ +   A+     +
Sbjct: 55  LLDSATGWHLGQRQDERFPMCSTFKFVLAAAVLQRVDQGKLMLAQRVKI--RASDMLEYD 112

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           P           +  +   A +  S N  +   
Sbjct: 113 PVTER-HIGGSLSVGELCRATMIYSDNPAANLL 144


>gi|167647485|ref|YP_001685148.1| beta-lactamase [Caulobacter sp. K31]
 gi|167349915|gb|ABZ72650.1| Beta-lactamase [Caulobacter sp. K31]
          Length = 338

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 50  AKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYI---IFEYLQSKKLHLNTQIPV 106
           A       V D++  Q+  F   E R+P  L  + T  +   +   +++ +L LN  + +
Sbjct: 48  APGSLGVAVEDLSTGQIISF-NGEKRFP--LQGVFTAPLGAAVLAEVEAGRLRLNETLRI 104

Query: 107 SKTAATQNPSKLY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                +   S +      +  +T ++ +   +  S N  +    + I G
Sbjct: 105 EDVDLSPPHSPIADAWPSRDTYTVQELLERAVGDSDNTAADVLMKRIGG 153


>gi|160875500|ref|YP_001554816.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Shewanella baltica OS195]
 gi|160861022|gb|ABX49556.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Shewanella baltica OS195]
 gi|315267687|gb|ADT94540.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Shewanella baltica OS678]
          Length = 502

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 4/39 (10%)

Query: 52 PKYSSIV---IDVNKNQMTGFKQDEPRY-PASLTKMMTL 86
          P++S I    +D++ NQ+   +Q E  + PAS  K++T 
Sbjct: 48 PRHSQIALLTMDMSSNQVIFSQQAETLFIPASTQKLLTA 86


>gi|260914819|gb|ACX54270.1| beta-lactamase blaCTX-M-5 [Salmonella enterica]
 gi|260914822|gb|ACX54272.1| beta-lactamase blaCTX-M-5 [Salmonella enterica]
          Length = 229

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 3/111 (2%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+           
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 114

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
                 T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 115 HVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 165


>gi|89890708|ref|ZP_01202217.1| glycoside hydrolase [Flavobacteria bacterium BBFL7]
 gi|89516853|gb|EAS19511.1| glycoside hydrolase [Flavobacteria bacterium BBFL7]
          Length = 983

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 16/63 (25%)

Query: 57  IVIDVNKNQMTGFKQ-------------DEPRY-PASLTKMM-TLYIIFEYLQSKKLHLN 101
           I+I   K ++   K              D+  Y  ASLTK+M TL ++ E  +   + L 
Sbjct: 619 ILI-ARKGKVVYQKNFGYHTYSKEKPVEDQDVYDIASLTKIMGTLPLVMELEEEGVISLE 677

Query: 102 TQI 104
             I
Sbjct: 678 DSI 680


>gi|27817549|emb|CAA66659.1| beta-lactamase [Pseudomonas aeruginosa]
          Length = 281

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 7/122 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+   
Sbjct: 38  RVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDL 97

Query: 112 TQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAK 167
            +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +   
Sbjct: 98  VEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVT 155

Query: 168 KI 169
           ++
Sbjct: 156 RL 157


>gi|83953437|ref|ZP_00962159.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Sulfitobacter sp. NAS-14.1]
 gi|83842405|gb|EAP81573.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Sulfitobacter sp. NAS-14.1]
          Length = 503

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 41  MISMASELHAKPKY-SSI---VIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL 93
            I  A EL  K +   ++   + D     +       +   PAS+TK +T     + L
Sbjct: 45  AIPSAQELIDKARLNGAVTFSLADAETGAVLEQNGPLDGMPPASVTKAITALYALDTL 102


>gi|83944396|ref|ZP_00956850.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Sulfitobacter sp. EE-36]
 gi|83844719|gb|EAP82602.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Sulfitobacter sp. EE-36]
          Length = 503

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 41  MISMASELHAKPKY-SSI---VIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL 93
            I  A EL  K +   ++   + D     +       +   PAS+TK +T     + L
Sbjct: 45  AIPSAQELIDKARLNGAVTFSLADAETGAVLEQNGPLDGMPPASVTKAITALYALDTL 102


>gi|297566451|ref|YP_003685423.1| beta-lactamase [Meiothermus silvanus DSM 9946]
 gi|296850900|gb|ADH63915.1| beta-lactamase [Meiothermus silvanus DSM 9946]
          Length = 271

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 54/167 (32%), Gaps = 23/167 (13%)

Query: 48  LHAKPKYSSIVID-VNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKLHLNTQIP 105
           + A P    IV++ +   +   +++  P   AS  K+ M  Y     L +    L  +I 
Sbjct: 11  IAAFPGEVGIVLENLATGERFSYQETRPFPAASTIKLPMLCY----ALSTG-ADLEQKIS 65

Query: 106 V-SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
           +  +T          L           +  +I  S N  +        G ++ F    + 
Sbjct: 66  IRPETVGLGTGILKELSPGLALPLRDILTLMIVVSDNTATNVV-LDFFGHKEPF----NA 120

Query: 165 KAKKIGMQNTIYKNASGLHDKN----------QITTARDQAILGILL 201
             +  G + T       L +              T+ARDQA +   L
Sbjct: 121 YYQAQGWRETHTAGMLSLPEDRPDPKREKGDFSRTSARDQAAILKAL 167


>gi|146260151|gb|ABQ14408.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T      A IT S N  +      I G ++   F   M +  
Sbjct: 92  MVEYSPVTEKHLTDG--MTVRGLCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|256367760|ref|YP_003108317.1| beta-lactamase TEM precursor [Escherichia coli]
 gi|228480697|gb|ACQ42024.1| beta-lactamase TEM precursor [Escherichia coli]
          Length = 242

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 12  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 71

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 72  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 129

Query: 167 KKI 169
            ++
Sbjct: 130 TRL 132


>gi|94495536|ref|ZP_01302116.1| hypothetical beta-lactamase precursor (penicillin-binding protein)
           [Sphingomonas sp. SKA58]
 gi|94424924|gb|EAT09945.1| hypothetical beta-lactamase precursor (penicillin-binding protein)
           [Sphingomonas sp. SKA58]
          Length = 498

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 35/104 (33%)

Query: 34  ILFLSIIMISMASELHAKPKYSSIVIDVN---------------------KNQMTGFKQ- 71
           ++ L +   ++A     + K +++V D++                       ++   K  
Sbjct: 5   LVLLLLCFPALAHAQADEKKIAAVVPDIDRLFHDFRQDSHSPGLIYGIVANGRLVHVKAF 64

Query: 72  -----DEPRY--------PASLTKMMTLYIIFEYLQSKKLHLNT 102
                D+ R          AS+TK  T   I +  +  KL L+ 
Sbjct: 65  GVQDLDQKRPVTPDSLFRIASMTKAFTALSILKLREDGKLSLDD 108


>gi|307289043|ref|ZP_07568999.1| putative beta-lactamase [Enterococcus faecalis TX0109]
 gi|306499752|gb|EFM69113.1| putative beta-lactamase [Enterococcus faecalis TX0109]
 gi|315163954|gb|EFU07971.1| putative beta-lactamase [Enterococcus faecalis TX1302]
          Length = 295

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 66/195 (33%), Gaps = 23/195 (11%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKL 98
           ++++   E       S +  D+   +          Y AS  K+ +T+ +  + + S + 
Sbjct: 51  LLVASVKEFEGTVGISYL--DLETGEQRSVNGQHEFYTASTIKVPLTMLVA-DTVASGQK 107

Query: 99  HLNTQIPVSKTAATQNPSKL---YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                IP +     +  + +    ++    +  +      IT S N       + + G  
Sbjct: 108 KWTDLIPYNAEEDYEEGTGIIAYNIQP--EYPLKTLQEYAITYSDNIAKNMLYDTLGGDA 165

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYF- 212
           K        +  +       Y + +   ++ Q ++     IL  L  +    P Y   + 
Sbjct: 166 KA-----KREMYQ------RYLHKTPSIEEPQFSSEDALVILQRLYIEKATKPDYQAIYD 214

Query: 213 SIRKFRYRNRIITNH 227
           S+++  +  R+ T  
Sbjct: 215 SMKQSVFHERMETPT 229


>gi|306835904|ref|ZP_07468897.1| beta-lactamase [Corynebacterium accolens ATCC 49726]
 gi|304568178|gb|EFM43750.1| beta-lactamase [Corynebacterium accolens ATCC 49726]
          Length = 332

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 18/38 (47%)

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            G  +       S+TKM T  +  + ++  K+ L+T +
Sbjct: 70  LGADEHTEVEIGSVTKMFTAELAHQLVEEGKISLDTTV 107


>gi|19550880|gb|AAL91566.1|AF484965_1 extended-spectrum beta-lactamase CTX-M-9 [Escherichia coli]
          Length = 264

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 61/162 (37%), Gaps = 18/162 (11%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHA-KPKYSSI-----------VID-VNKNQMTGFK 70
           +QR +      + L +    + ++  A + K +++           +ID  +  Q+   +
Sbjct: 1   VQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY-R 59

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTYFTTE 129
            DE     S +K+M    + +  +++K  LN  + + K A   N + +  K      T  
Sbjct: 60  GDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGTMTLA 118

Query: 130 QGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
           +   A +  S N         +   G    FA  + ++  ++
Sbjct: 119 ELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 160


>gi|216843|dbj|BAA02497.1| beta-lactamase precursor [Proteus mirabilis]
 gi|2821951|dbj|BAA24531.1| carbenicillinase [Proteus mirabilis]
          Length = 288

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 54/157 (34%), Gaps = 15/157 (9%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKYSSI-----------VIDVNKNQMTGFKQDEPR 75
              L+  +L  S++  S +     +    +I           V+D    +   +  ++  
Sbjct: 2   KFLLVFSLLIPSVVFASSSKFRQVEQDVKAIEVSLSARIGVSVLDTQNGEYWDYNGNQRF 61

Query: 76  YPASLTK-MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
              S  K +    ++++  +  K++ N+ + + K         +  +     T +    A
Sbjct: 62  PLTSTFKTIACAKLLYDA-EQGKVNPNSTVEIKKADLVTYSPVIEKQVGQAITLDDACFA 120

Query: 135 LITRSANDVSTAFGEFISGS--EKKFAILMSNKAKKI 169
            +T S N  +      + GS     F   + +K  ++
Sbjct: 121 TMTTSDNTAANIILSAVGGSKGVTDFLRQIGDKETRL 157


>gi|315940013|gb|ADU56217.1| CTX-M-14 extended-spectrum beta-lactamase [Escherichia coli]
 gi|315940015|gb|ADU56218.1| CTX-M-14 extended-spectrum beta-lactamase [Escherichia coli]
          Length = 291

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|307705916|ref|ZP_07642754.1| hypothetical protein SMSK597_1861 [Streptococcus mitis SK597]
 gi|307620577|gb|EFN99675.1| hypothetical protein SMSK597_1861 [Streptococcus mitis SK597]
          Length = 422

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 9/124 (7%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           M SE + K  +S  V  +   +  G  Q+E  Y AS+ K+  LY   E +      L+T 
Sbjct: 190 MLSEKYQKDSFSVYVKQLTTGKEAGINQNEKMYAASVLKLPYLYYAQEKINEGLYQLDTT 249

Query: 104 IPVSKTAATQNPSKLYLKEKT--------YFTTEQGILALITRSANDVSTAFGEFISG-S 154
           +           S       +         ++ +  I  +   S N      G +IS  S
Sbjct: 250 VKYVSEVNDFPGSYKPEGSGSLPKKEDNKEYSLKDLITKVSKESDNVAHNILGYYISNQS 309

Query: 155 EKKF 158
           +  F
Sbjct: 310 DSTF 313


>gi|302340959|gb|ADL27532.1| class A beta-lactamase CTX-M-99 [Klebsiella pneumoniae]
          Length = 291

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|289433511|ref|YP_003463383.1| beta-lactamase family protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289169755|emb|CBH26291.1| beta-lactamase family protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 259

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 62  NKNQMTGFKQDEPRY-PASLTKMMTLYI-IFEYLQSKKLHLNTQIPVS--KTAATQNPSK 117
           +  Q+   + ++  Y  AS+ K+  +Y+  FE +   +L L T++ +S  K  A     +
Sbjct: 23  DGKQVLFAENEDQLYTAASVIKL-PIYLYFFEKISKGELDLRTEVHISADKVVAGAGIIQ 81

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAF 147
           + L EK  +  E+ +  +I  S N  +   
Sbjct: 82  I-LPEKRTWRLEELLHLMIAVSDNTATNQL 110


>gi|282192946|gb|ADA81876.1| extended-spectrum beta-lactamase [Escherichia coli]
 gi|323709077|gb|ADY02555.1| beta-lactamase CTX-M-104 [Escherichia coli]
          Length = 291

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|208503047|gb|ACI29346.1| extended spectrum CTX-M-84 beta-lactamase [Salmonella enterica
           subsp. enterica serovar Derby]
          Length = 291

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|124021058|gb|ABM88809.1| beta-lactamase CTX-M-14 [Escherichia coli]
          Length = 290

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|56554763|gb|AAV97952.1| CTX-M type extended spectrum beta-lactamase [Escherichia coli]
          Length = 291

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGRRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|15858854|gb|AAK32961.1| beta-lactamase CTX-M-16 [Escherichia coli]
          Length = 291

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|48525548|gb|AAT45026.1| beta-lactamase KLUY-2 [Kluyvera sp. N03-0461]
          Length = 291

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|8101040|gb|AAF72529.1|AF252621_1 beta-lactamase CTX-M-9a [Escherichia coli]
 gi|11178696|gb|AAF05311.2|AF174129_1 betalactamase CTX-M-9 [Escherichia coli]
 gi|16304826|emb|CAC95176.1| CTX-M-9 beta-lactamase [Escherichia coli]
 gi|71273545|emb|CAJ13580.1| beta-lactamase [Escherichia coli]
 gi|71361876|gb|AAZ30046.1| CTX-M-9 [Enterobacter cloacae]
 gi|130918110|gb|ABO32643.1| extended-spectrum beta-lactamase CTX-M-9 [Enterobacter aerogenes]
 gi|221149277|gb|ACM04461.1| CTX-M-9 extended-spectrum beta-lactamase [Escherichia coli]
 gi|299483206|gb|ADJ19345.1| beta-lactamase CTX-M [Escherichia coli]
 gi|300391796|gb|ADK11280.1| beta-lactamase CTX-M-9 [Enterobacter cloacae]
          Length = 291

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|268634791|gb|ACZ16614.1| beta lactamase blaCTX-M-9 [Escherichia coli]
          Length = 272

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|129772167|gb|ABO31382.1| CTX-M-type extended spectrum beta-lactamase [Klebsiella pneumoniae]
 gi|129772206|gb|ABO31383.1| extended-spectrum beta-lactamase CTX-M-type [Klebsiella pneumoniae]
 gi|129772238|gb|ABO31384.1| extended-spectrum beta-lactamase CTX-M-type [Klebsiella pneumoniae]
          Length = 291

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|66932801|gb|AAY58238.1| extended-spectrum beta-lactamase CTX-M-14 [Escherichia coli]
          Length = 283

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|305667864|ref|YP_003864338.1| CTX-M-14 beta-lactamase [Escherichia coli]
 gi|310286432|ref|YP_003937693.1| extended-spectrum beta-lactamase CTX-M-14 [Escherichia coli]
 gi|8101042|gb|AAF72530.1|AF252622_1 beta-lactamase CTX-M-14 [Escherichia coli]
 gi|12044295|gb|AAG47784.1|AF311345_1 TOHO-2 like beta-lactamase [Escherichia coli]
 gi|14189984|gb|AAK55533.1|AF325133_1 cefotaxime-hydrolyzing beta-lactamase CTX-M-18 [Klebsiella
           pneumoniae]
 gi|15054448|dbj|BAB62310.1| class A beta-lactamase [Escherichia coli]
 gi|16304816|emb|CAC95170.1| CTX-M-14 beta-lactamase [Escherichia coli]
 gi|48525533|gb|AAT45014.1| beta-lactamase KLUY-1 [Kluyvera sp. N03-0458]
 gi|56201388|dbj|BAD72947.1| extended-spectrum beta-lactamase CTX-M-14 [Salmonella enterica
           subsp. enterica serovar Enteritidis]
 gi|62548342|gb|AAX86817.1| CTX-M-14 beta-lactamase [Salmonella enterica subsp. enterica
           serovar Panama]
 gi|68673209|emb|CAJ00135.1| beta-lactamase CTX-M-14 [Escherichia coli]
 gi|68673217|emb|CAJ00138.1| beta-lactamase CTX-M-14 [Escherichia coli]
 gi|68673224|emb|CAJ00141.1| beta-lactamase CTX-M-14 [Escherichia coli]
 gi|68673232|emb|CAJ00145.1| beta-lactamase CTX-M-14 [Klebsiella pneumoniae]
 gi|83584428|gb|ABC24984.1| extended spectrum CTX-M-14 beta-lactamase [Klebsiella pneumoniae]
 gi|83584430|gb|ABC24985.1| extended-spectrum beta-lactamase CTX-M-14 [Escherichia coli]
 gi|84039855|gb|ABC49843.1| extended spectrum CTX-M-14 beta-lactamase [Providencia stuartii]
 gi|84657411|gb|ABC60033.1| extended spectrum beta-lactamase CTX-M-14 [Enterobacter cloacae]
 gi|86160844|gb|ABC86896.1| beta-lactamase CTX-M 14 [Shigella flexneri]
 gi|86160846|gb|ABC86897.1| beta-lactamase CTX-M 14 [Shigella sonnei]
 gi|86161574|gb|ABC86920.1| extended spectrum betalactamase CTX-M-14b [Escherichia coli]
 gi|126009707|gb|ABN64105.1| beta-lactamase CTX-M-14 [Citrobacter freundii]
 gi|133712508|gb|ABO37114.1| beta-lactamase CTX-M-14 [Escherichia coli]
 gi|147712700|gb|ABQ45878.1| extended-spectrum beta-lactamase CTX-M-14 [Proteus mirabilis]
 gi|155573670|gb|ABU24286.1| extended-spectrum beta-lactamase CTX-M-14 [Escherichia coli]
 gi|157838786|gb|ABV82974.1| CTX-M-14 extended-spectrum beta-lactamase [Escherichia coli]
 gi|157838791|gb|ABV82978.1| CTX-M-14 extended-spectrum beta-lactamase [Escherichia coli]
 gi|161367440|gb|ABX71156.1| extended-spectrum beta-lactamase CTX-M-14b [Klebsiella pneumoniae]
 gi|164665314|gb|ABY66119.1| CTX-m-14-like beta-lactamase [Escherichia coli]
 gi|164689250|gb|ABY66904.1| beta-lactamase CTX-m-14-like [Escherichia coli]
 gi|213133714|gb|ACJ43256.1| CTX-M-14 extended-spectrum beta-lactamase [Escherichia coli]
 gi|213133724|gb|ACJ43261.1| CTX-M-14 extended-spectrum beta-lactamase [Escherichia coli]
 gi|213133730|gb|ACJ43264.1| CTX-M-14 extended-spectrum beta-lactamase [Escherichia coli]
 gi|214011887|gb|ACJ61682.1| CTX extended-spectrum beta-lactamase [Escherichia coli]
 gi|214011889|gb|ACJ61683.1| CTX extended-spectrum beta-lactamase [Escherichia coli]
 gi|214011891|gb|ACJ61684.1| CTX extended-spectrum beta-lactamase [Escherichia coli]
 gi|221149281|gb|ACM04464.1| CTX-M-14 extended spectrum beta-lactamase [Escherichia coli]
 gi|260779992|gb|ACX50625.1| CTX-M-14 extended-spectrum beta-lactamase [Escherichia coli]
 gi|260779998|gb|ACX50628.1| CTX-M-14 extended-spectrum beta-lactamase [Escherichia coli]
 gi|260914769|gb|ACX54238.1| beta-lactamase CTX-M-14 [Escherichia coli]
 gi|260914771|gb|ACX54239.1| beta-lactamase CTX-M-14 [Escherichia coli]
 gi|260914773|gb|ACX54240.1| beta-lactamase CTX-M-14 [Escherichia coli]
 gi|260914776|gb|ACX54242.1| beta-lactamase CTX-M-14 [Escherichia coli]
 gi|260914779|gb|ACX54244.1| beta-lactamase CTX-M-14 [Escherichia coli]
 gi|260914782|gb|ACX54246.1| beta-lactamase CTX-M-14 [Klebsiella pneumoniae]
 gi|260914785|gb|ACX54248.1| beta-lactamase CTX-M-14 [Klebsiella pneumoniae]
 gi|260914788|gb|ACX54250.1| beta-lactamase CTX-M-14 [Klebsiella pneumoniae]
 gi|260914791|gb|ACX54252.1| beta-lactamase CTX-M-14 [Escherichia coli]
 gi|260914794|gb|ACX54254.1| beta-lactamase CTX-M-14 [Escherichia coli]
 gi|260914797|gb|ACX54256.1| beta-lactamase CTX-M-14 [Escherichia coli]
 gi|260914799|gb|ACX54257.1| beta-lactamase CTX-M-14 [Escherichia coli]
 gi|260914805|gb|ACX54261.1| beta-lactamase CTX-M-14 [Klebsiella pneumoniae]
 gi|260914808|gb|ACX54263.1| beta-lactamase CTX-M-14 [Escherichia coli]
 gi|260914810|gb|ACX54264.1| beta-lactamase CTX-M-14 [Escherichia coli]
 gi|260914813|gb|ACX54266.1| beta-lactamase CTX-M-14 [Escherichia coli]
 gi|268634794|gb|ACZ16616.1| beta-lactamase CTX-M-14 [Escherichia coli]
 gi|268634800|gb|ACZ16621.1| beta-lactamase CTX-M-14 [Escherichia coli]
 gi|268634810|gb|ACZ16629.1| beta-lactamase CTX-M-14 [Escherichia coli]
 gi|281333458|gb|ADA61018.1| CTX-M-14 extended-spectrum beta-lactamase [Klebsiella pneumoniae]
 gi|295917910|gb|ADG60242.1| BlaCTX-M-14 [Escherichia coli]
 gi|304655613|emb|CBM42278.1| CTX-M-14 beta-lactamase [Escherichia coli]
 gi|308826761|emb|CBX36017.1| extended-spectrum beta-lactamase CTX-M-14 [Escherichia coli]
 gi|310780875|gb|ADK71043.2| extended-spectrum beta-lactamase CTX-M-14 [Escherichia coli]
 gi|325301872|gb|ADZ05828.1| CTX-M-14 beta-lactamase [Klebsiella pneumoniae]
 gi|329885287|gb|AEC05386.1| extended-spectrum beta-lactamase CTX-M-14 [Escherichia coli]
          Length = 291

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|119025425|ref|YP_909270.1| hypothetical protein BAD_0407 [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765009|dbj|BAF39188.1| hypothetical secreted protein with D-Ala-D-Ala carboxypeptidase 3
           (S13) domain [Bifidobacterium adolescentis ATCC 15703]
          Length = 503

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           SI I      +      D PR PAS  K +T Y     L   K  L+TQ
Sbjct: 123 SIAIADASGNVVAENNIDVPRTPASTMKTLTAYAAAVELDMGK-TLDTQ 170


>gi|254393705|ref|ZP_05008828.1| penicillin binding protein [Streptomyces clavuligerus ATCC 27064]
 gi|197707315|gb|EDY53127.1| penicillin binding protein [Streptomyces clavuligerus ATCC 27064]
          Length = 581

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 22/96 (22%)

Query: 17  YPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPK---------------------YS 55
            P  S   +R   L+   + +  +++  ++   A P                       S
Sbjct: 43  PPVPSSLRRRVRPLLAVGVTVLALVLPGSAPAGAGPSDTGLKKAIDTILADSRMTGATAS 102

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIF 90
            +V D    +    +  D+   PAS TK++T     
Sbjct: 103 VVVADAVTGERLYQRNADDRLVPASNTKIVTSIAAM 138


>gi|32470126|ref|NP_863495.1| beta-lactamase CTX-M-16 [Klebsiella pneumoniae]
 gi|21039160|gb|AAM33515.1|AF454633_1 extended spectrum beta-lactamase [Klebsiella pneumoniae]
 gi|16506520|gb|AAK71471.1| beta-lactamase CTX-M-17 [Klebsiella pneumoniae]
          Length = 291

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|299138679|ref|ZP_07031857.1| beta-lactamase [Acidobacterium sp. MP5ACTX8]
 gi|298599315|gb|EFI55475.1| beta-lactamase [Acidobacterium sp. MP5ACTX8]
          Length = 346

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 22/155 (14%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-- 118
           +N  +  G  Q+ P   AS  K+  LY     ++  K H + ++ V K       S +  
Sbjct: 56  LNNGKAVGIDQNLPVQTASDIKLAILYEAMLEVREGKAHWDEKL-VLKPGDPVPGSGVLT 114

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF-AILMSNKAKKIGMQNTIYK 177
           +       T +  +  ++  S N  +            +F    ++ +   +G+ NT   
Sbjct: 115 FFDTPLTLTLKDALTMMVIVSDNTATNLM-------IDRFGTDTVNARMASLGLVNTHLY 167

Query: 178 -----NASGLHDKNQ------ITTARDQAILGILL 201
                 A+G    +Q       TT  + A L   +
Sbjct: 168 KKIMKPATGPMPADQPKFGLGKTTPYEMATLMTRI 202


>gi|260576409|ref|ZP_05844399.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein
           4)-like protein [Rhodobacter sp. SW2]
 gi|259021292|gb|EEW24598.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein
           4)-like protein [Rhodobacter sp. SW2]
          Length = 323

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 43  SMASELHAKPKYSSI---VIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYL 93
           S+A  + A     ++   V D    ++      D  + PAS+ K +T     E L
Sbjct: 52  SVADLIAAARLGGAVGFVVADAATGRVLEAESPDLAQPPASVAKTITSLFALERL 106


>gi|149003151|ref|ZP_01828060.1| hypothetical protein CGSSp14BS69_11730 [Streptococcus pneumoniae
           SP14-BS69]
 gi|147758892|gb|EDK65888.1| hypothetical protein CGSSp14BS69_11730 [Streptococcus pneumoniae
           SP14-BS69]
          Length = 267

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 13/126 (10%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKLHLN 101
           M SE + K  +S  V  +   +  G  QDE  Y AS+ K+   Y+    E +      L+
Sbjct: 35  MLSEKYQKDSFSIYVKQLTTGKEAGINQDEKMYAASVLKL--SYLYYTQEKINEGLYQLD 92

Query: 102 TQIPVSKTAATQNPSKLYLKEKT--------YFTTEQGILALITRSANDVSTAFGEFISG 153
           T +           S       +         ++ +  I  +   S N      G +IS 
Sbjct: 93  TTVKYVSAVNDFPGSYKPEGSGSLPKKEDNKEYSLKDLITKVSKESDNVAHNLLGYYISN 152

Query: 154 -SEKKF 158
            S+  F
Sbjct: 153 QSDATF 158


>gi|84515936|ref|ZP_01003297.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-
          endopeptidase [Loktanella vestfoldensis SKA53]
 gi|84510378|gb|EAQ06834.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-
          endopeptidase [Loktanella vestfoldensis SKA53]
          Length = 490

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 60 DVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYL 93
          D    ++   +    P  PAS+TK +T     E L
Sbjct: 62 DPATGEVLETYNAAAPLPPASVTKAVTALYALETL 96


>gi|226307045|ref|YP_002767005.1| peptidoglycan synthase FtsI [Rhodococcus erythropolis PR4]
 gi|226186162|dbj|BAH34266.1| peptidoglycan synthase FtsI [Rhodococcus erythropolis PR4]
          Length = 624

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 47/157 (29%), Gaps = 49/157 (31%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPA----------------------- 78
           + +A +       S +V+D    Q+     D    PA                       
Sbjct: 271 VQIAKDKSGAKNASVVVMDSKTGQVLAMSNDSTFNPAIGIDKNAPTAEMGNPSVSTPFEP 330

Query: 79  -SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI----- 132
            S+ K++T       ++  K   +  + V   + T + +          T +        
Sbjct: 331 GSVNKIVTA---AAAIEDGKTTPDEVLQV-PGSITMSGA----------TVKDAWDHGVA 376

Query: 133 ----LALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
                 +  +S+N  +    + +   E ++A +++  
Sbjct: 377 PYTSTGVFGKSSNVGTLMLAQRVG--EDRYADMLNRF 411


>gi|116643125|gb|ABK06382.1| beta-lactamase bla-CTX-M-14 [Escherichia coli]
          Length = 288

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|14189986|gb|AAK55534.1|AF325134_1 ceftazidime-hydrolyzing beta-lactamase CTX-M-19 [Klebsiella
           pneumoniae]
 gi|27462658|gb|AAO15538.1|AF458080_8 extended-spectrum beta-lactamase CTX-M-19 [Klebsiella pneumoniae]
          Length = 291

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|88192667|pdb|2CC1|A Chain A, Crystal Structure Of The Class A Beta-Lactamase From
           Mycobacterium Fortuitum
          Length = 262

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 8/105 (7%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYI---IFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           +   +    + DE     S  K    Y+   + +  +  ++ L+ ++ V   A   N   
Sbjct: 25  LQSGRRITHRPDEMFAMCSTFK---GYVAARVLQMAEHGEISLDNRVFVDADALVPNSPV 81

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAI 160
              +     T  +   A + RS N  +    + I G  +   FA 
Sbjct: 82  TEARAGAEMTLAELCQAALQRSDNTAANLLLKTIGGPAAVTAFAR 126


>gi|296282018|ref|ZP_06860016.1| Beta-lactamase class A [Citromicrobium bathyomarinum JL354]
          Length = 356

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 18/116 (15%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
            +D+      G   D+    AS +K+         +   +  L+++  +           
Sbjct: 88  AVDLTTGAEVGVLADQRFPMASTSKVAIAATFLAGVDQGRWSLSSEFELP---------- 137

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
                 TY +  + +  +ITRS ND + A    + G +      ++   +  G+ +
Sbjct: 138 ---GRGTYISAREHLNLMITRSCNDCTDALLNAVGGPQA-----VNAWMRSAGILD 185


>gi|85062589|gb|ABC69156.1| CTX-M type extended-spectrum beta-lactamase [Escherichia coli]
          Length = 291

 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAMQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|225867629|ref|YP_002743577.1| hypothetical protein SZO_00120 [Streptococcus equi subsp.
           zooepidemicus]
 gi|225700905|emb|CAW97573.1| putative exported protein [Streptococcus equi subsp. zooepidemicus]
          Length = 428

 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 31/136 (22%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN------TQI 104
           K  YS  V  +N     G   D+  Y AS++K+ TLY + + L+S  L          ++
Sbjct: 203 KENYSIFVKQLNTQASAGINADKQMYAASISKLATLYSVQKKLKSGSLSEGKSLKYIDEV 262

Query: 105 -------------PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
                         +SKTA  ++           +   + + A+  +S N  +   G ++
Sbjct: 263 NHFYGDYDPTGSGKISKTADKKD-----------YNVMELLKAVSQQSDNVATNILGYYL 311

Query: 152 SGSE-KKFAILMSNKA 166
                + F   +   A
Sbjct: 312 CNQYNQAFQSEIRALA 327


>gi|255098962|gb|ACU00830.1| TEM-1 beta-lactamase [Escherichia coli]
          Length = 242

 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 7/122 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+   
Sbjct: 1   RVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDL 60

Query: 112 TQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAK 167
            +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +   
Sbjct: 61  VEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVT 118

Query: 168 KI 169
           ++
Sbjct: 119 RL 120


>gi|154486834|ref|ZP_02028241.1| hypothetical protein BIFADO_00666 [Bifidobacterium adolescentis
           L2-32]
 gi|154084697|gb|EDN83742.1| hypothetical protein BIFADO_00666 [Bifidobacterium adolescentis
           L2-32]
          Length = 503

 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           SI I      +      D PR PAS  K +T Y     L   K  L+TQ
Sbjct: 123 SIAIADASGNVVAENNIDVPRTPASTMKTLTAYAAAVELDMGK-TLDTQ 170


>gi|6176546|gb|AAF05613.1|AF190694_1 inhibitor-resistant beta-lactamase TEM-76 [Escherichia coli]
          Length = 286

 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT   N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMGDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|229490432|ref|ZP_04384273.1| penicillin binding protein transpeptidase domain protein
           [Rhodococcus erythropolis SK121]
 gi|229322722|gb|EEN88502.1| penicillin binding protein transpeptidase domain protein
           [Rhodococcus erythropolis SK121]
          Length = 624

 Score = 41.0 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 47/157 (29%), Gaps = 49/157 (31%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPA----------------------- 78
           + +A +       S +V+D    Q+     D    PA                       
Sbjct: 271 VQIAKDKSGAKNASVVVMDSKTGQVLAMSNDSTFNPAIGIDKNAPTAEMGNPSVSTPFEP 330

Query: 79  -SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI----- 132
            S+ K++T       ++  K   +  + V   + T + +          T +        
Sbjct: 331 GSVNKIVTA---AAAIEDGKTTPDEVLQV-PGSITMSGA----------TVKDAWDHGVA 376

Query: 133 ----LALITRSANDVSTAFGEFISGSEKKFAILMSNK 165
                 +  +S+N  +    + +   E ++A +++  
Sbjct: 377 PYTSTGVFGKSSNVGTLMLAQRVG--EDRYADMLNRF 411


>gi|912450|dbj|BAA02999.1| beta-lactamase [Streptomyces fradiae]
 gi|4514651|dbj|BAA75488.1| beta-lactamase [Streptomyces fradiae]
          Length = 306

 Score = 41.0 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 42/126 (33%), Gaps = 10/126 (7%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKLHLNTQIPVSKT 109
            +  +   D    +   ++ DE    AS+ K  T+ +  +   L      L  ++  +  
Sbjct: 55  ARLGAFAYDTGTGRTVAYRADERFPIASMFK--TIAVAAVLRDLDRDGEVLARRVHYTAD 112

Query: 110 AATQNP----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMS 163
              ++     + L        T  +   A +TRS N  +      + G     +F   + 
Sbjct: 113 YVKRSGYSPVTGLPENVANGMTVAELCEATLTRSDNTAANLLLHDLGGPTAVTRFCRSVG 172

Query: 164 NKAKKI 169
           +   ++
Sbjct: 173 DHVTRL 178


>gi|207849087|gb|ACI25375.1| beta-lactamase TEM-166 [Escherichia coli]
          Length = 286

 Score = 41.0 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVGELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|260914816|gb|ACX54268.1| beta-lactamase blaCTX-M-5 [Salmonella enterica]
          Length = 226

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 3/111 (2%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+           
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 114

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
                 T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 115 HVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 165


>gi|330830381|ref|YP_004393333.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Aeromonas veronii B565]
 gi|328805517|gb|AEB50716.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Aeromonas veronii B565]
          Length = 479

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 21/58 (36%)

Query: 30 LMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLY 87
          L+G     S +    A     +    +I++  N         D+   PAS  K++T  
Sbjct: 5  LIGFCALFSSLAAHAAPLTPPQGGQYAIMVQGNNGVEFARHADQMIAPASTMKVLTAL 62


>gi|320148807|gb|ADW20349.1| blaPME-1 [Pseudomonas aeruginosa]
          Length = 309

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 5/103 (4%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP- 115
            +D    +  G+++DE     S  K++    + +  +  +L     I  S       +P 
Sbjct: 57  ALDAGSGRSLGWREDERFGMCSTFKLLLAATVLDAARQGRLDGTAPIHFSDDDLVPHSPV 116

Query: 116 --SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
               L L   +  T  +   A    S N  +      + G E 
Sbjct: 117 LREHLALGS-STLTAPELARATQLTSDNAAANLLIRKLGGPEA 158


>gi|197215901|gb|ACH53188.1| CTX-M-65 beta-lactamase [Escherichia coli]
          Length = 278

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 58  VID-VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           +ID  +  Q+   + DE     S +K+M    + +  +++K  LN  + + K A   N +
Sbjct: 39  LIDTADNTQVLY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYN 96

Query: 117 KLYLK-EKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            +  K      T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 97  PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 152


>gi|149201707|ref|ZP_01878681.1| beta-lactamase precursor [Roseovarius sp. TM1035]
 gi|149144755|gb|EDM32784.1| beta-lactamase precursor [Roseovarius sp. TM1035]
          Length = 306

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 5/117 (4%)

Query: 57  IVI-DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +VI D   +     + +E    AS  K M    +   +    L L  +I + + A     
Sbjct: 63  VVIRDSGSDWTVSHRAEERFLMASTFKTMLCGAVLHRVDEGDLDLEERIAI-EAAEVLEY 121

Query: 116 SKLYLK-EKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
           + +  K      +  +   A +  S N  +    + I G  S   F   + +   ++
Sbjct: 122 APVTEKMVGETMSVGELCHAALDMSDNTATNLLIDRIEGPQSVTAFLREIGDPVSRL 178


>gi|295110945|emb|CBL27695.1| Beta-lactamase class A [Synergistetes bacterium SGP1]
          Length = 280

 Score = 40.6 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 50/150 (33%), Gaps = 16/150 (10%)

Query: 62  NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-- 119
              ++     +     AS+ K+  L +  + +   +L       +  +A     + +   
Sbjct: 33  ESGEVVEINPNRALCSASIIKLPILALALKDVGEGRLDWKKTYQI-ASANRVGGTGVLRE 91

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           L E    + E+    +I  S N  +    + IS         ++   + +G  NT  +  
Sbjct: 92  LDEIREASLEKLAFLMIALSDNIAANQVIDLIS------MDRITPFCRSLGYTNTRCERK 145

Query: 180 SGLHDK------NQITTARDQAILGILLRK 203
             L  +      N  T+A D   +   + +
Sbjct: 146 Q-LDMQAIREGRNNYTSAGDAGRMLSAVAR 174


>gi|294813214|ref|ZP_06771857.1| putative penicillin-binding exported protein [Streptomyces
           clavuligerus ATCC 27064]
 gi|326441674|ref|ZP_08216408.1| d-alanyl-d-alanine
           carboxypeptidase/d-alanyl-d-alanine-endopeptidase
           [Streptomyces clavuligerus ATCC 27064]
 gi|294325813|gb|EFG07456.1| putative penicillin-binding exported protein [Streptomyces
           clavuligerus ATCC 27064]
          Length = 549

 Score = 40.6 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 22/96 (22%)

Query: 17  YPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPK---------------------YS 55
            P  S   +R   L+   + +  +++  ++   A P                       S
Sbjct: 11  PPVPSSLRRRVRPLLAVGVTVLALVLPGSAPAGAGPSDTGLKKAIDTILADSRMTGATAS 70

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIF 90
            +V D    +    +  D+   PAS TK++T     
Sbjct: 71  VVVADAVTGERLYQRNADDRLVPASNTKIVTSIAAM 106


>gi|320010031|gb|ADW04881.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Streptomyces flavogriseus ATCC 33331]
          Length = 493

 Score = 40.6 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 12/100 (12%)

Query: 56  SIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYL-QSKKLHLNTQIPVSKTAATQ 113
           ++VID    +    +    P  PAS  K+ T   +   L  + ++   T + +S  + T 
Sbjct: 135 AVVIDAATGKQLFARGAATPMTPASTVKIATTVAVLSALGPAHRIA--TTVALSPDSRT- 191

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               L L      T      A +   A D + A  +  +G
Sbjct: 192 ----LTLVGGGDPT---LDKAALRSLAADAARALPDGGTG 224


>gi|25140613|gb|AAN73274.1| extended-spectrum beta-lactamase KLUG-1 [Kluyvera georgiana]
          Length = 291

 Score = 40.6 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 61/162 (37%), Gaps = 18/162 (11%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELH-AKPKYSSI-----------VID-VNKNQMTGFK 70
           ++R + +    + L +    + ++ +  + K +++           +ID  +  Q    +
Sbjct: 6   VKRVMLMTTTCISLLLGSAPLYAQANDVQQKLAALEKSSGGRLGVALIDTADNAQTLY-R 64

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAATQNPSKLYLKEKTYFTTE 129
            DE     S +K+M    + +  +++K  L+ ++ + S      NP        T  T  
Sbjct: 65  ADERFAMCSTSKVMAAAAVLKQSETQKKVLSQKVEIKSSDLINYNPITEKHVNGT-MTLA 123

Query: 130 QGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           +   A +  S N         + G +K   FA  + +   ++
Sbjct: 124 ELSAAALQYSDNTAMNKLIAHLGGPDKVTAFARAIGDNTFRL 165


>gi|325518504|gb|EGC98195.1| D-alanyl-D-alanine endopeptidase [Burkholderia sp. TJI49]
          Length = 157

 Score = 40.6 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKMMT 85
           ++ V+DV+       +     R  AS++K+MT
Sbjct: 126 AAYVLDVDSGTPLLARNSRTVRPIASISKLMT 157


>gi|225024676|ref|ZP_03713868.1| hypothetical protein EIKCOROL_01558 [Eikenella corrodens ATCC
           23834]
 gi|224942565|gb|EEG23774.1| hypothetical protein EIKCOROL_01558 [Eikenella corrodens ATCC
           23834]
          Length = 475

 Score = 40.6 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 4/85 (4%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASEL-HAKPKYSSIVI-DVNKNQMT-GFKQDEPRYPA 78
           +  Q   +L+          ++ A +    +P  +++ + D++  ++    + D    PA
Sbjct: 7   LLCQNCSRLLLTFALFFYFQVAFAIDFGRIQPDEAAVYVQDLDSGEVLLAHRADVSMNPA 66

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQ 103
           S  K++T +     L        TQ
Sbjct: 67  STMKLVTTFAALRGL-GGDYRWQTQ 90


>gi|332077818|gb|EGI88277.1| putative exported protein [Streptococcus pneumoniae GA41301]
          Length = 283

 Score = 40.6 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 13/126 (10%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKLHLN 101
           M SE + K  +S  V  +   +  G  QDE  Y AS+ K+   Y+    E +      L+
Sbjct: 51  MLSEKYQKDSFSIYVKQLTTGKEAGINQDEKMYAASVLKL--SYLYYTQEKINEGLYQLD 108

Query: 102 TQIPVSKTAATQNPSKLYLKEKT--------YFTTEQGILALITRSANDVSTAFGEFISG 153
           T +           S       +         ++ +  I  +   S N      G +IS 
Sbjct: 109 TTVKYVSAVNDFPGSYKPEGSGSLPKKEDNKEYSLKDLITKVSKESDNVAHNLLGYYISN 168

Query: 154 -SEKKF 158
            S+  F
Sbjct: 169 QSDATF 174


>gi|223937532|ref|ZP_03629436.1| beta-lactamase [bacterium Ellin514]
 gi|223893883|gb|EEF60340.1| beta-lactamase [bacterium Ellin514]
          Length = 557

 Score = 40.6 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 6/69 (8%)

Query: 63  KNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKE 122
            NQ      D      S++K++T  ++ + +Q  ++ L+   PVSK   T     +  + 
Sbjct: 68  TNQTL--NGDTLFEIGSVSKVLTASLLADMVQRGEVKLDD--PVSKYLPT--SVHMPTRN 121

Query: 123 KTYFTTEQG 131
               T    
Sbjct: 122 GKEITLLDL 130


>gi|146260059|gb|ABQ14385.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 40.6 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQI--PVSK 108
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  P + 
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYPQND 91

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
                  ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|29692031|gb|AAO88912.1| CTX-M-33 beta-lactamase [Escherichia coli]
          Length = 291

 Score = 40.6 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K +   N S +  
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEI-KKSDLVNYSPIAE 113

Query: 121 K-EKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
           K      +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 114 KHVNGTMSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|47168592|pdb|1PZP|A Chain A, Tem-1 Beta-Lactamase In Complex With A Novel, Core-
           Disrupting, Allosteric Inhibitor
          Length = 263

 Score = 40.6 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 17  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQRD 76

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 77  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 134

Query: 167 KKI 169
            ++
Sbjct: 135 TRL 137


>gi|332522951|ref|ZP_08399203.1| hypothetical protein STRPO_1973 [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314215|gb|EGJ27200.1| hypothetical protein STRPO_1973 [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 348

 Score = 40.6 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/100 (12%), Positives = 33/100 (33%), Gaps = 2/100 (2%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119
           D+   +       +P    S  K+    ++ +  +  K  L  +  ++ T    +   + 
Sbjct: 113 DLESGKTFSMNDRQPMTAGSTYKLPLNMLVVDETEKGKYSLEQRFDITNTTYEYDREHMA 172

Query: 120 LKEK--TYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
              +     +  +     +  S N  + A  + + G +K 
Sbjct: 173 YVNQFAGAMSISEMQEYSLMYSENTPAYALADRLGGMDKA 212


>gi|296269638|ref|YP_003652270.1| beta-lactamase [Thermobispora bispora DSM 43833]
 gi|296092425|gb|ADG88377.1| beta-lactamase [Thermobispora bispora DSM 43833]
          Length = 348

 Score = 40.6 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 63  KNQMTGFK----QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
             ++   +     D     AS+TK+ T  ++     + +L L+  +
Sbjct: 43  SGRLLPERPPVAADALFDIASITKLFTTVVLLALADAGRLALDDPV 88


>gi|300778859|ref|ZP_07088717.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Chryseobacterium gleum ATCC 35910]
 gi|300504369|gb|EFK35509.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Chryseobacterium gleum ATCC 35910]
          Length = 489

 Score = 40.6 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 7   QSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQM 66
               +K+ L  P     +     L  K L    +   MA  +     +  +V D    ++
Sbjct: 33  NYDNQKSSLNLPSPVSTVVEKTVLSAKELVDINVNTMMADPVLKNATWGFVVYDPKTKKV 92

Query: 67  TG-FKQDEPRYPASLTKMMTLYIIF 90
              + ++ P  PAS TK++T     
Sbjct: 93  ISSYNENTPLVPASTTKLLTTETAL 117


>gi|218246638|ref|YP_002372009.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Cyanothece sp. PCC
           8801]
 gi|218167116|gb|ACK65853.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Cyanothece sp. PCC
           8801]
          Length = 428

 Score = 40.6 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 76/224 (33%), Gaps = 28/224 (12%)

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           + ++L ++     T  + +  +   S N ++    +   GS        + KA  +  + 
Sbjct: 230 DGTQLLIR-HQSLTVAELLKEMNLYSNNPMAEMLAQLAGGSI--VVAQTAAKAANLSPEE 286

Query: 174 TIYKNASGLHDKNQITTARDQAILGIL---LRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
               N SGL  +N+I+     A+L  +   L+ N  +    F +        +       
Sbjct: 287 IQLINGSGLGVENRISPRASVAMLMAIEDKLKDNPLKVSDLFPMAGRDTTGTVQW----- 341

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +   +KTG                    V+ + G+  ++ER Q    +I S    
Sbjct: 342 -RNIPDGVAVKTGTLNQ----------------VSALAGVMPTKERGQVWFSIINSGSNV 384

Query: 291 KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
              + +Q +    L+       ++  K  + Y    K + KA  
Sbjct: 385 DRFRVEQDNLLQRLAQHWQLTPIISNKETKPYLGDPKRNLKAEG 428


>gi|94502846|gb|ABF29653.1| beta-lactamase [Escherichia coli]
          Length = 252

 Score = 40.6 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 58  VID-VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           +ID  +  Q+   + DE     S +K+M    + +  +++K  LN  + + K A   N +
Sbjct: 32  LIDTADNTQVLY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYN 89

Query: 117 KLYLK-EKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            +  K      T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 90  PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 145


>gi|172041252|ref|YP_001800966.1| hypothetical protein cur_1572 [Corynebacterium urealyticum DSM
           7109]
 gi|171852556|emb|CAQ05532.1| hypothetical protein cu1572 [Corynebacterium urealyticum DSM 7109]
          Length = 276

 Score = 40.6 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 64  NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-LYLKE 122
               G KQDE    ASL K+  L++  E +Q   L    ++ V+ +  T          +
Sbjct: 30  GVTIGRKQDEKITVASLYKIRLLHLTLEAIQRGDLDPRLRVDVAPSKGTYEGYGFAAFDD 89

Query: 123 KTYFTTEQGILALITRSANDVSTAF 147
               +    +  + + S N  +   
Sbjct: 90  AVNVSLRDLMKQVASVSDNVAAHEI 114


>gi|86159813|ref|YP_466598.1| beta-lactamase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776324|gb|ABC83161.1| Beta-lactamase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 394

 Score = 40.6 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 21/89 (23%)

Query: 35  LFLSIIMISMASELHAK----PKYSSIVIDVNKNQMTGF--------------KQDEPRY 76
           +  ++  ++ A E  A+    P  S++V  +   ++                 + D+   
Sbjct: 1   MSAALPPVTAALEAGARERVAPALSAVV--LRDGRLVHASWHGELSGPAPRALRPDDLFD 58

Query: 77  PASLTKMM-TLYIIFEYLQSKKLHLNTQI 104
            ASLTK+M T  +  + ++   L L+  +
Sbjct: 59  VASLTKVMATATLAAQLVEEGALDLDAPV 87


>gi|68535481|ref|YP_250186.1| hypothetical protein jk0411 [Corynebacterium jeikeium K411]
 gi|68263080|emb|CAI36568.1| hypothetical protein jk0411 [Corynebacterium jeikeium K411]
          Length = 276

 Score = 40.6 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 64  NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-LYLKE 122
               G KQDE    ASL K+  L++  E +Q   L    ++ V+ +  T          +
Sbjct: 30  GVTIGRKQDEKITVASLYKIRLLHLTLEAIQRGDLDPRLRVDVAPSKGTYEGYGFAAFDD 89

Query: 123 KTYFTTEQGILALITRSANDVSTAF 147
               +    +  + + S N  +   
Sbjct: 90  AVNVSLRDLMKQVASVSDNVAAHEI 114


>gi|300725024|ref|YP_003714350.1| beta-lactamase/D-ala carboxypeptidase, penicillin-binding protein
           [Xenorhabdus nematophila ATCC 19061]
 gi|297631567|emb|CBJ92276.1| beta-lactamase/D-ala carboxypeptidase, penicillin-binding protein
           [Xenorhabdus nematophila ATCC 19061]
          Length = 405

 Score = 40.6 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +QD     AS+TK+MT  ++ +  Q +++ L   +
Sbjct: 102 RQDSLIRIASITKLMTSEVMIKLAQKERIKLTDPL 136


>gi|146260061|gb|ABQ14386.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 40.6 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 48/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E  +P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEEHFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|91218246|ref|ZP_01255193.1| Beta-lactamase [Psychroflexus torquis ATCC 700755]
 gi|91183609|gb|EAS70005.1| Beta-lactamase [Psychroflexus torquis ATCC 700755]
          Length = 400

 Score = 40.6 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 14/65 (21%)

Query: 55  SSIVIDVNKNQMTGFK-------------QDEPRYP-ASLTKMMTLYIIFEYLQSKKLHL 100
            +I +    +++   K               E   P AS+TK+MT   I +  +  +  L
Sbjct: 45  GAITLIAKSDEILHLKSYGYSDIENAVSINTETLIPIASMTKIMTTIAILQLYEKGEFLL 104

Query: 101 NTQIP 105
           +  I 
Sbjct: 105 DDPIE 109


>gi|296506540|ref|YP_003667774.1| penicillin-binding protein 4* [Bacillus thuringiensis BMB171]
 gi|296327127|gb|ADH10054.1| Penicillin-binding protein 4* [Bacillus thuringiensis BMB171]
          Length = 398

 Score = 40.6 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           ASL+KM T  + F+ ++  +L L  +I 
Sbjct: 47  ASLSKMFTAVMTFQLIEKGQLQLEDKIT 74


>gi|284038393|ref|YP_003388323.1| beta-lactamase [Spirosoma linguale DSM 74]
 gi|283817686|gb|ADB39524.1| beta-lactamase [Spirosoma linguale DSM 74]
          Length = 447

 Score = 40.6 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 18/74 (24%)

Query: 50  AKPKYSSIVIDVNKNQMTGFK--------QDEPRY------PASLTKMMTLYIIFEYLQS 95
           A P  ++IV+     ++   K         ++P         AS+TK +T   +    + 
Sbjct: 64  AFPGVTAIVV--RNGKIVYHKAFGTSDLDNNKPLAKDAIYRIASMTKAITSLAVMMLHEE 121

Query: 96  KKLHLNTQIPVSKT 109
            K+ L+   P+SK 
Sbjct: 122 GKVMLDD--PISKY 133


>gi|15805212|ref|NP_293900.1| D-alanyl-D-alanine carboxypeptidase [Deinococcus radiodurans R1]
 gi|6457845|gb|AAF09764.1|AE001880_1 D-alanyl-D-alanine carboxypeptidase, putative [Deinococcus
           radiodurans R1]
          Length = 474

 Score = 40.6 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 51  KPKYSSIVI-DVNKNQMT-GFKQDEPRYPASLTKMMT-LYIIFEYLQSKKLHLNTQIPV 106
           +P  + +++ D+N  ++      D P  PAS  K++T   ++++   +     +T++ V
Sbjct: 59  RPVRTGLLVRDLNTGKVLVALDPDRPLVPASTMKLVTAAAVLYDRGGAG-GWWSTELTV 116


>gi|51892706|ref|YP_075397.1| putative beta-lactamase [Symbiobacterium thermophilum IAM 14863]
 gi|51856395|dbj|BAD40553.1| putative beta-lactamase [Symbiobacterium thermophilum IAM 14863]
          Length = 261

 Score = 40.6 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 2/97 (2%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNP 115
           V D+   +  G       Y AS  K+     +      +++ L+  I        A    
Sbjct: 31  VTDLATGRSAGLNPMAEFYAASTIKVPIAMAVLWLADRRRISLDQTIAYQPEDYQAGTGI 90

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
            +  ++     +  + +   IT S N        FI 
Sbjct: 91  LQATIQPGDEVSVRRLLELTITVSDNIARNMLERFIG 127


>gi|320007159|gb|ADW02009.1| hypothetical protein Sfla_0544 [Streptomyces flavogriseus ATCC
           33331]
          Length = 432

 Score = 40.6 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 37/98 (37%), Gaps = 10/98 (10%)

Query: 54  YSSIVI--DVNKNQMTGFKQDEPRYP-ASLTKMMTLYI---IFEYLQSKKLHLNTQIPVS 107
           +S++V   +    +    ++ +   P  S  K+   Y+   + + + S  +  + ++ V+
Sbjct: 142 WSALVTREEGGTTETLYAREADRPMPNGSSYKL---YLMRALADAVASGSVRWDDEVTVT 198

Query: 108 KTAATQNPSKLY-LKEKTYFTTEQGILALITRSANDVS 144
               +     +  L +    +  +    +I  S N  +
Sbjct: 199 PALRSLPTGDMQELPDGARVSVRETAYKMIAMSDNTAA 236


>gi|319785809|ref|YP_004145284.1| beta-lactamase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464321|gb|ADV26053.1| beta-lactamase [Pseudoxanthomonas suwonensis 11-1]
          Length = 373

 Score = 40.6 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 46/137 (33%), Gaps = 19/137 (13%)

Query: 64  NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLYLKE 122
           N+  G++  EP Y AS  K+     +   + S  L L+T++ +        + +    + 
Sbjct: 65  NESYGYRASEPWYLASGVKVPVAIAVLREVDSGALSLDTELVLRADDFVDGDGATNRHRP 124

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL 182
                    +  ++  S N  +      +          ++N A ++          SGL
Sbjct: 125 GDALAVSWLLEQMLVHSDNTATDVLIRTVG------LPAVNNVAAEL--------VDSGL 170

Query: 183 HDKNQITTARDQAILGI 199
                ITT  D   L  
Sbjct: 171 ----HITTLADVRRLAY 183


>gi|326789205|ref|YP_004307026.1| copper amine oxidase-like domain-containing protein [Clostridium
           lentocellum DSM 5427]
 gi|326539969|gb|ADZ81828.1| copper amine oxidase-like domain-containing protein [Clostridium
           lentocellum DSM 5427]
          Length = 423

 Score = 40.6 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 92/267 (34%), Gaps = 35/267 (13%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119
           D+       + +++  + AS+ K      I++     K  LN     +    T    K+ 
Sbjct: 74  DIQSGYTYTYNENQKYFIASIIKAPYCMYIYDLASQGKCDLNKVYTYAARHKTDGTGKIQ 133

Query: 120 -LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            +K    FT  Q +   I  S N   +   E                AKK+G+++     
Sbjct: 134 EMKIGKTFTLRQLLEYAIKYSDNVAMSIIRENFP------VPGYKEYAKKLGLKH----- 182

Query: 179 ASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF--RYRNRIITNHNKL-LNKMH 235
                    I  A +  IL           Y +     +    R  +++  N + ++K  
Sbjct: 183 ------PEDIKYATNGDILVSEAGVYIEAIYNFIKTNSYGAELRKLMLSTTNPMIISKYP 236

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKH 295
            +   K G+   S  ++  ++     P +  ++   T+ + D  + + I+  +EK+ L  
Sbjct: 237 VVR--KYGWADQSFHDM--AIVEAPRPYLLCIL---TNHDGDFASFKKISQVIEKQVLN- 288

Query: 296 QQTHRKDNLSSTSLKKSLMIKKLKRTY 322
                 +NL +T     + +   K+  
Sbjct: 289 ------NNLEATPSPYEINVNNEKKDI 309


>gi|229082906|ref|ZP_04215329.1| Penicillin-binding protein 4* [Bacillus cereus Rock4-2]
 gi|228700394|gb|EEL52957.1| Penicillin-binding protein 4* [Bacillus cereus Rock4-2]
          Length = 398

 Score = 40.6 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           ASL+KM T  + F+ ++  +L L  +I 
Sbjct: 47  ASLSKMFTAVMTFQLIEKGQLQLEDKIT 74


>gi|229489777|ref|ZP_04383634.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Rhodococcus erythropolis SK121]
 gi|229323287|gb|EEN89051.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Rhodococcus erythropolis SK121]
          Length = 469

 Score = 40.6 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 10/92 (10%)

Query: 37  LSIIMISMASELHAKP---KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEY 92
            S I  ++   + A P   K++ +V D     +        P  PAS TK++T       
Sbjct: 81  ASGIAAAIGPAV-ANPDLGKFTGVVADALTGNILWSTDPSTPMTPASTTKVLTASAAL-- 137

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKT 124
               KL L+ ++  +    T     + +    
Sbjct: 138 ---LKLPLDHRLSTTVVPGTSPGQVVLVGGGD 166


>gi|239617263|ref|YP_002940585.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Kosmotoga olearia TBF 19.5.1]
 gi|239506094|gb|ACR79581.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Kosmotoga olearia TBF 19.5.1]
          Length = 380

 Score = 40.6 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 24 IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVI-DVNKNQMTGFKQDEPRY-PASLT 81
          +++ I L+  +L  SI   ++   +     +  I + D+   ++         + PAS+T
Sbjct: 1  MKKVIFLIFILLTTSIFGDTVRELVDNFDGFVGIYVEDIETGEIITQYNATKLFTPASVT 60

Query: 82 KMMTLYIIFEYL 93
          K+ TL    E L
Sbjct: 61 KLFTLLAALENL 72


>gi|327404610|ref|YP_004345448.1| beta-lactamase [Fluviicola taffensis DSM 16823]
 gi|327320118|gb|AEA44610.1| beta-lactamase [Fluviicola taffensis DSM 16823]
          Length = 441

 Score = 40.6 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           QD      S+TK+ T  +IF+ ++  KL L+ ++ 
Sbjct: 71  QDTKYQVGSITKIYTAVLIFQLVEKGKLSLDDKLE 105


>gi|44894131|gb|AAS48620.1| VEB-3 extended-spectrum beta-lactamase [Enterobacter cloacae]
 gi|261746150|gb|ACX94071.1| extended-spectrum beta-lactamase [Acinetobacter genomosp. 3]
          Length = 299

 Score = 40.6 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 87/270 (32%), Gaps = 38/270 (14%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASE---------LHAKPKYSSIVI----DVNKNQMTG 68
           + I + I L+   LF +++  +  ++         L AK     + I    + +  ++  
Sbjct: 1   MKIVKRILLVLLSLFFTVVYSNAQTDNLTLKIENVLKAKNARIGVAIFNSNEKDTFKI-- 58

Query: 69  FKQDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEK 123
              D      S+ K  +     +   +    L    +I ++       T +P K      
Sbjct: 59  -NNDFHFPMQSVMKFPI--ALAVLSEIDKGNLSFEQKIEITPQDLLPKTWSPIKEEFPNG 115

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNASG 181
           T  T EQ +   ++ S N       + I G  S +KF          I            
Sbjct: 116 TTLTIEQILNYTVSESDNIGCDILLKLIGGTDSVQKFLNANHFTDISIKANEEQMHKDWN 175

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH----NKLLNKMH-- 235
              +N  T       +  LL   +    +  S + + +  +I+       N+L  ++   
Sbjct: 176 TQYQNWATP----TAMNKLLIDTYNNKNQLLSKKSYDFIWKIMRETTTGSNRLKGQLPKN 231

Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            I   KTG    SG N   +    D  ++ 
Sbjct: 232 TIVAHKTGT---SGINNGIAAATNDVGVIT 258


>gi|330469345|ref|YP_004407088.1| beta-lactamase class C [Verrucosispora maris AB-18-032]
 gi|328812316|gb|AEB46488.1| beta-lactamase class C [Verrucosispora maris AB-18-032]
          Length = 473

 Score = 40.6 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 16/27 (59%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           ASLTK+ T  +  + + + ++ L+  +
Sbjct: 172 ASLTKVFTAILTLQQVDAGRIALDAPV 198


>gi|163841400|ref|YP_001625805.1| hypothetical protein RSal33209_2666 [Renibacterium salmoninarum
           ATCC 33209]
 gi|162954876|gb|ABY24391.1| conserved hypothetical protein [Renibacterium salmoninarum ATCC
           33209]
          Length = 160

 Score = 40.6 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 5/72 (6%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           YPAS+ K+M  + + + +   K+ L+              S       T    +Q    +
Sbjct: 80  YPASVLKVMVGFGVLQLVDQGKITLD-----GNYDYKPTGSSATCTGDTSKPVKQYFDEM 134

Query: 136 ITRSANDVSTAF 147
           IT S N  + A 
Sbjct: 135 ITYSDNHSTCAL 146


>gi|16444918|emb|CAD08929.1| CTX-M-21 beta-lactamase [Escherichia coli]
          Length = 291

 Score = 40.6 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 58  VID-VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           +ID  +  Q+   + DE     S +K+M    + +  +++K  LN  + + K A   N +
Sbjct: 52  LIDTADNTQVLY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYN 109

Query: 117 KLYLK-EKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            +  K      T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 110 PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|66361079|pdb|1YLT|A Chain A, Atomic Resolution Structure Of Ctx-M-14 Beta-Lactamase
 gi|66361085|pdb|1YLZ|A Chain A, X-Ray Crystallographic Structure Of Ctx-M-14
           Beta-Lactamase Complexed With Ceftazidime-Like Boronic
           Acid
 gi|66361086|pdb|1YLZ|B Chain B, X-Ray Crystallographic Structure Of Ctx-M-14
           Beta-Lactamase Complexed With Ceftazidime-Like Boronic
           Acid
          Length = 263

 Score = 40.6 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 58  VID-VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           +ID  +  Q+   + DE     S +K+M    + +  +++K  LN  + + K A   N +
Sbjct: 24  LIDTADNTQVLY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYN 81

Query: 117 KLYLK-EKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            +  K      T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 82  PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 137


>gi|317122490|ref|YP_004102493.1| beta-lactamase [Thermaerobacter marianensis DSM 12885]
 gi|315592470|gb|ADU51766.1| beta-lactamase [Thermaerobacter marianensis DSM 12885]
          Length = 426

 Score = 40.6 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 45/139 (32%), Gaps = 18/139 (12%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           D+      G  + EP + AS  K+ + LY+    + + +  ++ ++           + +
Sbjct: 198 DLQTGATWGINEREPIHAASTIKVPLVLYV-NHQVAAGRARMDDRVVYEPDRDLVGGAGI 256

Query: 119 YLK---EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             +       ++        IT S N  +                 +    + +G +   
Sbjct: 257 LQRDGFPGKSYSLRILTNLSITISDNVATNMLFRHFGK------DNVGAFMRSLGGEVIF 310

Query: 176 YKNASGLHDKNQITTARDQ 194
                G     +I+TARD 
Sbjct: 311 ---PEGR----RISTARDM 322


>gi|2970345|gb|AAC05975.1| beta-lactamase TEM-60 [Providencia stuartii]
          Length = 286

 Score = 40.6 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDPNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|57236771|gb|AAW48997.1| TEM beta-lactamase [Vibrio cholerae]
 gi|197725587|gb|ACH73002.1| TEM beta-lactamase [Acinetobacter baumannii]
          Length = 286

 Score = 40.6 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N   +    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGGILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLRNMGDHVTRL 160


>gi|41059115|gb|AAR99058.1| CTX-M beta-lactamase [Klebsiella pneumoniae]
          Length = 257

 Score = 40.6 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 58  VID-VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           +ID  +  Q+   + DE     S +K+M    + +  +++K  LN  + + K A   N +
Sbjct: 27  LIDTADNTQVLY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYN 84

Query: 117 KLYLK-EKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            +  K      T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 85  PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 140


>gi|66361080|pdb|1YLW|A Chain A, X-Ray Structure Of Ctx-M-16 Beta-Lactamase
          Length = 263

 Score = 40.6 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 58  VID-VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           +ID  +  Q+   + DE     S +K+M    + +  +++K  LN  + + K A   N +
Sbjct: 24  LIDTADNTQVLY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYN 81

Query: 117 KLYLK-EKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            +  K      T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 82  PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 137


>gi|226304107|ref|YP_002764065.1| D-alanyl-D-alanine carboxypeptidase [Rhodococcus erythropolis PR4]
 gi|226183222|dbj|BAH31326.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus
           erythropolis PR4]
          Length = 441

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 37  LSIIMISMASELHAKP---KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTL 86
            S I  ++   + A P   K++ +V D     +        P  PAS TK++T 
Sbjct: 53  ASGIAAAIGPAV-ANPDLGKFTGVVADALTGNILWSADPSTPMTPASTTKVLTA 105


>gi|197106032|ref|YP_002131409.1| Beta-lactamase [Phenylobacterium zucineum HLK1]
 gi|196479452|gb|ACG78980.1| Beta-lactamase [Phenylobacterium zucineum HLK1]
          Length = 415

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           D     AS+TK +T       ++  KL L+  + 
Sbjct: 64  DTLFRIASMTKPVTSLAALMLIEEGKLKLDDPVT 97


>gi|66361077|pdb|1YLJ|A Chain A, Atomic Resolution Structure Of Ctx-M-9 Beta-Lactamase
 gi|66361081|pdb|1YLY|A Chain A, X-Ray Crystallographic Structure Of Ctx-M-9 Beta-Lactamase
           Complexed With Ceftazidime-Like Boronic Acid
 gi|66361082|pdb|1YLY|B Chain B, X-Ray Crystallographic Structure Of Ctx-M-9 Beta-Lactamase
           Complexed With Ceftazidime-Like Boronic Acid
 gi|66361089|pdb|1YM1|A Chain A, X-Ray Crystallographic Structure Of Ctx-M-9 Beta-Lactamase
           Complexed With A Boronic Acid Inhibitor (Sm2)
 gi|66361090|pdb|1YM1|B Chain B, X-Ray Crystallographic Structure Of Ctx-M-9 Beta-Lactamase
           Complexed With A Boronic Acid Inhibitor (Sm2)
 gi|66361102|pdb|1YMS|A Chain A, X-Ray Crystallographic Structure Of Ctx-M-9 Beta-Lactamase
           Complexed With Nafcinin-Like Boronic Acid Inhibitor
 gi|66361103|pdb|1YMS|B Chain B, X-Ray Crystallographic Structure Of Ctx-M-9 Beta-Lactamase
           Complexed With Nafcinin-Like Boronic Acid Inhibitor
 gi|66361104|pdb|1YMX|A Chain A, X-Ray Crystallographic Structure Of Ctx-M-9 Beta-Lactamase
           Covalently Linked To Cefoxitin
 gi|66361105|pdb|1YMX|B Chain B, X-Ray Crystallographic Structure Of Ctx-M-9 Beta-Lactamase
           Covalently Linked To Cefoxitin
 gi|225734190|pdb|3G2Z|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 2
           (Gz2)
 gi|225734191|pdb|3G2Z|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 2
           (Gz2)
 gi|225734192|pdb|3G30|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 3
           (G30)
 gi|225734193|pdb|3G31|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 4
           (Gf1)
 gi|225734194|pdb|3G31|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 4
           (Gf1)
 gi|225734195|pdb|3G32|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 6
           (3g3)
 gi|225734196|pdb|3G32|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 6
           (3g3)
 gi|225734197|pdb|3G34|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 11
           (1ce)
 gi|225734198|pdb|3G34|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 11
           (1ce)
 gi|225734199|pdb|3G35|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 12
           (F13)
 gi|225734200|pdb|3G35|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 12
           (F13)
          Length = 263

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 58  VID-VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           +ID  +  Q+   + DE     S +K+M    + +  +++K  LN  + + K A   N +
Sbjct: 24  LIDTADNTQVLY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYN 81

Query: 117 KLYLK-EKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            +  K      T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 82  PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 137


>gi|8469129|sp|O65975|BLC5_SALTY RecName: Full=Beta-lactamase CTX-M-5; AltName: Full=Cefotaximase 5;
           Flags: Precursor
 gi|3021577|emb|CAA06311.1| beta-lactamase [Salmonella typhimurium]
          Length = 291

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
            + +Q+     DE     S +K+M    + +  +S K  LN ++ + K +   N + +  
Sbjct: 56  ADNSQILYL-ADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEI-KASDLVNYNPIAE 113

Query: 121 K-EKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           K      T  +     +  S N         + G +K   FA  + ++  ++
Sbjct: 114 KHVNGTMTLAELGAGALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 165


>gi|152965897|ref|YP_001361681.1| beta-lactamase [Kineococcus radiotolerans SRS30216]
 gi|151360414|gb|ABS03417.1| Beta-lactamase [Kineococcus radiotolerans SRS30216]
          Length = 335

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 2/96 (2%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
            +D         + DE    AS  K++    + +   +++  L+  +P +      +   
Sbjct: 83  ALDTGTGASVVHRADERFAYASTFKVLAAAAVLDRTSAEE--LDEVVPFTAEDLVDHSPV 140

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
             L      +      A  T S N  +    E + G
Sbjct: 141 TELHVGAGMSLRDLAAAATTVSDNTAANLLLEHLGG 176


>gi|18656800|gb|AAL77985.1| extended-spectrum beta-lactamase CTX-M-13 [Enterobacter cloacae]
          Length = 264

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 61/162 (37%), Gaps = 18/162 (11%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHA-KPKYSSI-----------VIDVNKN-QMTGFK 70
           +QR +      + L +    + ++  A + K +++           +ID   N Q+   +
Sbjct: 1   MQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTKDNTQVLY-R 59

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTYFTTE 129
            DE     S +K+M    + +  +++K  LN  + + K A   N + +  K      T  
Sbjct: 60  GDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGTMTLA 118

Query: 130 QGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
           +   A +  S N         +   G    FA  + ++  ++
Sbjct: 119 ELSAAALQYSDNTAMNKLIAQLGGPGGVTAFAREIGDETFRL 160


>gi|302544350|ref|ZP_07296692.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302461968|gb|EFL25061.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Streptomyces himastatinicus ATCC 53653]
          Length = 320

 Score = 40.2 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 58/168 (34%), Gaps = 11/168 (6%)

Query: 131 GILALITRSANDVSTAFGEFI---SGSEKKF---AILMSNKAKKIGM--QNTIYKNASGL 182
            +  ++T S ND++ A        +G    F   A  ++ + KK+ +        + SGL
Sbjct: 148 LVERMLTNSDNDIAEALARQTAVAAGEPASFDGAAKAVTARLKKLRLPVSGARIADGSGL 207

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKT 242
             ++ ++ A    +L        P+     +       +  +            +   KT
Sbjct: 208 DREDHVSAALLAQVLVRAADIGHPELRSLLTGLPVAGFSGTLRTRYDADTVGRGVVRAKT 267

Query: 243 GYTRNSGFNIVTSLRYKDDPI--VAVVMGMPTSQERDQKALELITSFL 288
           G        +  S+   D  +   A +    T  +  Q+AL+ + S L
Sbjct: 268 GTLTGVN-TLAGSVVDADGRLLVFAFMTNGTTDPQGAQRALDTMASAL 314


>gi|238864042|gb|ACR66297.1| beta-lactamase CTX-M14 [Escherichia coli]
 gi|238864044|gb|ACR66298.1| beta-lactamase CTX-M14 [Escherichia coli]
 gi|238864046|gb|ACR66299.1| beta-lactamase CTX-M14 [Escherichia coli]
 gi|238864048|gb|ACR66300.1| beta-lactamase CTX-M14b [Escherichia coli]
 gi|238864050|gb|ACR66301.1| beta-lactamase CTX-M14b [Escherichia coli]
          Length = 276

 Score = 40.2 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 58  VID-VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           +ID  +  Q+   + DE     S +K+M    + +  +++K  LN  + + K A   N +
Sbjct: 45  LIDTADNTQVLY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYN 102

Query: 117 KLYLK-EKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            +  K      T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 103 PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 158


>gi|152964496|ref|YP_001360280.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Kineococcus radiotolerans SRS30216]
 gi|151359013|gb|ABS02016.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Kineococcus radiotolerans SRS30216]
          Length = 478

 Score = 40.2 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIF 90
           L  ++  + ++       S+ V+D    + +     D PR PAS+ K++T     
Sbjct: 78  LGGVVAPLLADPALGASVSTSVVDALTGETLLATAADVPRTPASVAKLLTAVAAL 132


>gi|58119473|gb|AAW65394.1| extended-spectrum beta-lactamase CTX-M-13 [Proteus mirabilis]
          Length = 278

 Score = 40.2 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 61/162 (37%), Gaps = 18/162 (11%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHA-KPKYSSI-----------VIDVNKN-QMTGFK 70
           +QR +      + L +    + ++  A + K +++           +ID   N Q+   +
Sbjct: 6   MQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTKDNTQVLY-R 64

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTYFTTE 129
            DE     S +K+M    + +  +++K  LN  + + K A   N + +  K      T  
Sbjct: 65  GDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGTMTLA 123

Query: 130 QGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
           +   A +  S N         +   G    FA  + ++  ++
Sbjct: 124 ELSAAALQYSDNTAMNKLIAQLGGPGGVTAFAREIGDETFRL 165


>gi|300783228|ref|YP_003763519.1| beta-lactamase class C [Amycolatopsis mediterranei U32]
 gi|299792742|gb|ADJ43117.1| beta-lactamase class C [Amycolatopsis mediterranei U32]
          Length = 475

 Score = 40.2 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 17/35 (48%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
                  AS++K MT + + +  ++ +L L+  + 
Sbjct: 64  ASTRLPIASVSKSMTAFAVLQLAEAGRLGLDQPVT 98


>gi|288558437|dbj|BAI68283.1| CTX-M 27 extended spectrum beta lactamase [Escherichia coli]
          Length = 277

 Score = 40.2 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 58  VID-VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           +ID  +  Q+   + DE     S +K+M    + +  +++K  LN  + + K A   N +
Sbjct: 45  LIDTADNTQVLY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYN 102

Query: 117 KLYLK-EKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            +  K      T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 103 PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 158


>gi|270208406|ref|YP_003329180.1| beta-lactamase CTX-M-14 [Klebsiella pneumoniae]
 gi|218546442|gb|ACK98831.1| beta-lactamase CTX-M-14 [Klebsiella pneumoniae]
          Length = 283

 Score = 40.2 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 58  VID-VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           +ID  +  Q+   + DE     S +K+M    + +  +++K  LN  + + K A   N +
Sbjct: 44  LIDTADNTQVLY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYN 101

Query: 117 KLYLK-EKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            +  K      T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 102 PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 157


>gi|146387089|pdb|2P74|A Chain A, Ctx-M-9 Class A Beta-Lactamase Apo Crystal Structure At
           0.88 Angstrom Resolution
 gi|146387090|pdb|2P74|B Chain B, Ctx-M-9 Class A Beta-Lactamase Apo Crystal Structure At
           0.88 Angstrom Resolution
 gi|225734188|pdb|3G2Y|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 1
           (Gf4)
 gi|225734189|pdb|3G2Y|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 1
           (Gf4)
          Length = 263

 Score = 40.2 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 58  VID-VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           +ID  +  Q+   + DE     S +K+M    + +  +++K  LN  + + K A   N +
Sbjct: 24  LIDTADNTQVLY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYN 81

Query: 117 KLYLK-EKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            +  K      T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 82  PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 137


>gi|29832334|ref|NP_826968.1| beta-lactamase [Streptomyces avermitilis MA-4680]
 gi|29609453|dbj|BAC73503.1| putative beta-lactamase [Streptomyces avermitilis MA-4680]
          Length = 276

 Score = 40.2 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 52/155 (33%), Gaps = 21/155 (13%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           ++ V+  +   +       + R+P AS+TK +  Y +    +   + L+         A 
Sbjct: 18  AAAVVRAD-GTVLAAHGPVDHRFPLASVTKPLAAYAVLVAYEEGAVELDEP-------AG 69

Query: 113 QNPSKL-YLKEKTYFTTEQGILALITRS-----ANDVSTAFGEFIS-GSEKKFAILMSNK 165
              S + +L   T                    +N      G+ I+  ++  FA  +   
Sbjct: 70  PPGSTVRHLLAHTSGLAFDEHRVTSAPGERRLYSNAGFEVLGDHIAKATDIPFAEYLRQA 129

Query: 166 AKK-IGMQNTIYKNASGLHDKNQITTARDQAILGI 199
             + +GM  T   +  G   ++ ++T  D      
Sbjct: 130 VLEPLGMTRT---SLDGSPARDGVSTVADLVRFAA 161


>gi|311030864|ref|ZP_07708954.1| hypothetical protein Bm3-1_10016 [Bacillus sp. m3-13]
          Length = 275

 Score = 40.2 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 57/155 (36%), Gaps = 22/155 (14%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKM--MTLYIIFEYLQSKKLHLNTQIPV-SKTAATQN 114
           VI+    Q         +  ASL K+  M     F+ +++  L L+ +  + ++   +  
Sbjct: 29  VIEDGGGQRLDKDAYVTKKAASLIKIPIMMA--AFKQVEAGILSLSDRYSIDTRNIVSGA 86

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
               ++   T FT  + +  +I  S N  +    + I  +       +++  ++ G+ NT
Sbjct: 87  GVIQFMDGDTSFTLGELLTLMIIVSDNTATNKVIDIIGWN------GVNDFCREQGLTNT 140

Query: 175 IY--------KNASGLHDKNQITTARDQAILGILL 201
                       A+G+      T+A +       L
Sbjct: 141 KLERKMMDFKATAAGI---ENRTSALEMIECLKYL 172


>gi|288558435|dbj|BAI68282.1| CTX-M 14 extended spectrum beta lactamase [Klebsiella pneumoniae
           subsp. pneumoniae]
          Length = 277

 Score = 40.2 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 58  VID-VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           +ID  +  Q+   + DE     S +K+M    + +  +++K  LN  + + K A   N +
Sbjct: 45  LIDTADNTQVLY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYN 102

Query: 117 KLYLK-EKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            +  K      T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 103 PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 158


>gi|322696210|gb|EFY88006.1| D-stereospecific peptide hydrolase [Metarhizium acridum CQMa 102]
          Length = 385

 Score = 40.2 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 12/60 (20%)

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           S+TK+ T  +I + ++  KL+L+    VS+          YL  +TY   +    A I++
Sbjct: 63  SITKVFTATVILQLIEEGKLNLSD--TVSR----------YLSPETYANIDDAANASISQ 110


>gi|117920430|ref|YP_869622.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Shewanella sp. ANA-3]
 gi|117612762|gb|ABK48216.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Shewanella sp. ANA-3]
          Length = 513

 Score = 40.2 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 35/81 (43%), Gaps = 21/81 (25%)

Query: 31 MGKILFLSIIMISMASELHAK-----------------PKYSSIVI---DVNKNQMTGFK 70
          +  +L  S++ + ++++ HA                  P++S + +   D++ N +   +
Sbjct: 19 IKGLLLGSLVSMLLSTQAHAAIHPMDESILAKQIADIAPRHSQVALLARDLSTNTLLYSQ 78

Query: 71 QDEPRY-PASLTKMMTLYIIF 90
          Q +  + PAS  K++T     
Sbjct: 79 QADTLFIPASTQKVLTAVTAL 99


>gi|322372528|ref|ZP_08047064.1| MutT/NUDIX family protein [Streptococcus sp. C150]
 gi|321277570|gb|EFX54639.1| MutT/NUDIX family protein [Streptococcus sp. C150]
          Length = 152

 Score = 40.2 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 1/86 (1%)

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
              +     ++ ++ N      G  I   E  F+ L     +++G   T      G  D+
Sbjct: 24  IPNQDKTKIILVQAPNGAWFLPGGEIEAGEDHFSALKRELIEELGYTAT-LGQYYGQADE 82

Query: 186 NQITTARDQAILGILLRKNFPQYYKY 211
              ++ RD              + + 
Sbjct: 83  YFYSSHRDTYFYNPAYIYEVVDFSEI 108


>gi|260914802|gb|ACX54259.1| beta-lactamase CTX-M-14 [Escherichia coli]
          Length = 241

 Score = 40.2 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP-----KYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|192288797|ref|YP_001989402.1| beta-lactamase [Rhodopseudomonas palustris TIE-1]
 gi|192282546|gb|ACE98926.1| Beta-lactamase [Rhodopseudomonas palustris TIE-1]
          Length = 291

 Score = 40.2 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV--SKTAATQNP 115
           V+D    +M G + DE     S  K++   ++   +  K+  L+ ++    S        
Sbjct: 50  VLDTASGRMIGHRLDERFPMCSTFKVLAAGLVLARVDRKQEKLDRRVSYAKSNLVTYSPA 109

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
           ++ ++++    T  +   A IT S N  +        G      FA  + ++  ++
Sbjct: 110 TEKHVEDG--MTIAELCEAAITLSDNTAANLLLASFGGPAGLTAFARSLGDETTRL 163


>gi|22203991|gb|AAM92465.1| CARB-8 beta-lactamase [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 288

 Score = 40.2 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 54/157 (34%), Gaps = 15/157 (9%)

Query: 27  NIQLMGKILFLSIIMISMASELHAKPKYSSI-----------VIDVNKNQMTGFKQDEPR 75
              L+  +L  S++  S +     +    +I           V+D    +   +  ++  
Sbjct: 2   KFLLVFSLLIPSVVFASSSKFRQVEQDVKAIEVSLSARIGVSVLDTQNGEYWDYNGNQRF 61

Query: 76  YPASLTK-MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
              S  K +    ++++  +  K++ N+ I + K         +  +     T +    A
Sbjct: 62  PLTSTFKTIACAKLLYDA-EQGKVNPNSTIEIKKADLVTYSPVIEKQVGQAITLDDACFA 120

Query: 135 LITRSANDVSTAFGEFISGS--EKKFAILMSNKAKKI 169
            +T S N  +      + GS     F   + +K  ++
Sbjct: 121 TMTTSDNTAANIILSAVGGSKGVTDFLRQIGDKETRL 157


>gi|300863736|ref|ZP_07108667.1| Penicillin-binding protein, transpeptidase [Oscillatoria sp. PCC
           6506]
 gi|300338243|emb|CBN53813.1| Penicillin-binding protein, transpeptidase [Oscillatoria sp. PCC
           6506]
          Length = 413

 Score = 40.2 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 87  YIIF-EYLQSKKLHLNTQIPV-SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
            + F + +   ++ L+  + +  +  A+ +         T +T  +    +I  S N  +
Sbjct: 198 LVAFFQAVDEGRVRLDQVLTLRPEHIASGSGELQDQSPGTKYTALEVATKMIAISDNTAT 257

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197
               E + G+E      ++ + +  G+  T  +N          T+ ++   L
Sbjct: 258 NMLIELLGGAEA-----LNQQFQTWGLTVTAIRNNLPDLAGTNTTSPKELVNL 305


>gi|262066494|ref|ZP_06026106.1| beta-lactamase [Fusobacterium periodonticum ATCC 33693]
 gi|291379798|gb|EFE87316.1| beta-lactamase [Fusobacterium periodonticum ATCC 33693]
          Length = 263

 Score = 40.2 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 55/140 (39%), Gaps = 16/140 (11%)

Query: 72  DEPRYPASLTKMMTLYII--FEYLQSKKLHLNTQIPVSKTA-ATQNPSKLYLKEKTYFTT 128
           ++    AS+ K++   +      +   +L L+ +I ++ +     +     L     F+ 
Sbjct: 40  NKKVLSASMIKLL--ILAELMRQVSEAELSLSQKITLTDSMRVGGDGILKVLDSGHQFSL 97

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK--- 185
           ++    +I  S N+ +  F + ++         ++   + + ++ T  +      +    
Sbjct: 98  KELAKLMIVVSDNEATNIFIDLLT------MENINALGRNLALKETFLQRKMMDSNAKEK 151

Query: 186 --NQITTARDQAILGILLRK 203
             +  T++ D A+L  L+ +
Sbjct: 152 GYDNYTSSDDIALLLRLIYE 171


>gi|238864052|gb|ACR66302.1| beta-lactamase CTX-M9 [Escherichia coli]
 gi|238864054|gb|ACR66303.1| beta-lactamase CTX-M9 [Escherichia coli]
 gi|238864056|gb|ACR66304.1| beta-lactamase CTX-M9 [Proteus vulgaris]
          Length = 276

 Score = 40.2 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 58  VID-VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           +ID  +  Q+   + DE     S +K+M    + +  +++K  LN  + + K A   N +
Sbjct: 45  LIDTADNTQVLY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYN 102

Query: 117 KLYLK-EKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            +  K      T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 103 PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 158


>gi|254489962|ref|ZP_05103157.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Methylophaga thiooxidans DMS010]
 gi|224465047|gb|EEF81301.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Methylophaga thiooxydans DMS010]
          Length = 465

 Score = 40.2 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 73/219 (33%), Gaps = 34/219 (15%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
            S+ ++   SE       S +V++ N N+ +   + D  R PAS+ K++T         +
Sbjct: 28  ASLPLLPTGSEA------SILVVESNTNKTLLNHRSDTLRPPASVQKLVTAL-------A 74

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
             L L T    +     ++   ++            I  L+ R   D S      +  + 
Sbjct: 75  ATLQLGTDFTFTTDIEAKDQDVIFRFSGDPSLRRDNIRQLVARLKRDRSV-IRGNVYLNG 133

Query: 156 KKFAILMSNKAK---KIGMQNTIYKNASGLHDKNQITTA------RDQAILGILLRKNFP 206
             F             +G+  +    AS +   +    A      ++   LG  + ++ P
Sbjct: 134 SAFNEFERADGWPWDNLGVCYS--APASSISLDDNCAVAKMVFKDKESTKLGFEISRDAP 191

Query: 207 ----QYYKYFSIRKFRYRNRII--TNHNKLLNKMHNIDG 239
               +        + RY N  +   N N+   K+    G
Sbjct: 192 INIIENLDLLDGLEKRYCNFKLLADNTNQF--KLGGCIG 228


>gi|112785110|gb|ABI20745.1| TEM extended-spectrum beta-lactamase [Escherichia coli]
          Length = 286

 Score = 40.2 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E  +
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEEHF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|89899009|ref|YP_521480.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Rhodoferax ferrireducens T118]
 gi|89343746|gb|ABD67949.1| D-Ala-D-Ala carboxypeptidase PBP3. Serine peptidase. MEROPS
          family S13 [Rhodoferax ferrireducens T118]
          Length = 499

 Score = 40.2 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 12/75 (16%)

Query: 30 LMGKILFLSIIMISMASELHA--------KPKYSSIVIDVNKNQM---TGFKQDEPRYPA 78
          L+G +     +  ++  E+ A        +   S +V+D    ++      +   P  PA
Sbjct: 21 LIGALTLWPALAQNLPPEVDAALARARVPRDAVSLLVMDAE-GKLPPRLSHRATVPMSPA 79

Query: 79 SLTKMMTLYIIFEYL 93
          S+ K++T Y   + L
Sbjct: 80 SVMKLVTTYAALDLL 94


>gi|332285509|ref|YP_004417420.1| Beta-lactamase [Pusillimonas sp. T7-7]
 gi|330429462|gb|AEC20796.1| Beta-lactamase [Pusillimonas sp. T7-7]
          Length = 289

 Score = 40.2 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 78/235 (33%), Gaps = 25/235 (10%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT---AAT 112
           +I+ D      + ++ DE     S  K++ +  + + + + K  L  +I   K+   A  
Sbjct: 50  AIL-DTATGMRSAYRGDERFLICSTFKLLLVAAVLKRVDNNKERLGRRISFDKSEILAWA 108

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
              S          + ++   A +  S N  +    + + G        ++  A+ +G  
Sbjct: 109 PVTSLNVGSPG--MSIQELCEATMIMSDNTAANLLLKTLGGP-----AAITTYARGLGDT 161

Query: 173 NTIYKNASGLH-----DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
            T   +   L+     D++  T       +  +L  N     +    R   + +   T  
Sbjct: 162 KTRLDHIEPLNGNQQGDEDTTTPWSMLQNMQKILLGN--ALSEESKTRLVNWFSMNQTGS 219

Query: 228 NKLLNKMH--NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV----VMGMPTSQER 276
             L   +    + G KTG   N+  N +  +       + V    +     S+ R
Sbjct: 220 QALKAGLPPDWLIGDKTGAASNAN-NDIALITPPGRQPILVTAYYINDTKNSRAR 273


>gi|296138289|ref|YP_003645532.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
           anine-endopeptidase [Tsukamurella paurometabola DSM
           20162]
 gi|296026423|gb|ADG77193.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
           anine-endopeptidase [Tsukamurella paurometabola DSM
           20162]
          Length = 456

 Score = 40.2 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHL 100
           I+ A +      ++ ++ D     +   +    PR PAS TK     ++        L  
Sbjct: 78  IAAALQNPDLGDFTGVIADAASGGVLWERDAARPRTPASTTK-----VLTAAAALLTLPA 132

Query: 101 NTQIPVSKTAATQNPSKLYLKEKT 124
           + +I  +  A  Q    +++    
Sbjct: 133 DKRITTTVVAGAQPGEVVFVGAGD 156


>gi|543895|sp|P35392|BLAC_STRFR RecName: Full=Beta-lactamase; AltName: Full=Penicillinase; Flags:
           Precursor
 gi|153187|gb|AAA26709.1| beta-lactamase precursor (gtg start codon) (EC 3.5.2.6)
           [Streptomyces fradiae]
          Length = 306

 Score = 40.2 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 42/126 (33%), Gaps = 10/126 (7%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKLHLNTQIPVSKT 109
            +  +   D    +   ++ DE    AS+ K  T+ +  +   L      L  ++  +  
Sbjct: 55  ARLGAFAYDTGTGRTVAYRADERFPIASMFK--TIAVAAVLRDLDRDGEVLARRVHYTAD 112

Query: 110 AATQNP----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMS 163
              ++     + L        T  +   A +TRS N  +      + G     +F   + 
Sbjct: 113 YVKRSGYSPVTGLPENVANGMTVAELCEATLTRSDNTAANLLLRDLGGPTAVTRFCRSVG 172

Query: 164 NKAKKI 169
           +   ++
Sbjct: 173 DHVTRL 178


>gi|305680597|ref|ZP_07403405.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Corynebacterium matruchotii ATCC 14266]
 gi|305660128|gb|EFM49627.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Corynebacterium matruchotii ATCC 14266]
          Length = 420

 Score = 40.2 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 12/50 (24%)

Query: 60  DVNKNQMTGFKQDE-PRYPASLTKMMT---LYIIFEYLQSKKLHLNTQIP 105
           DV    +   K  + P  PAS TK++T     +        KL L+ +I 
Sbjct: 81  DVTTGNVVLAKNPQLPLLPASSTKVLTVSAALL--------KLDLDDRIT 122


>gi|225022108|ref|ZP_03711300.1| hypothetical protein CORMATOL_02141 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945041|gb|EEG26250.1| hypothetical protein CORMATOL_02141 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 420

 Score = 40.2 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 12/50 (24%)

Query: 60  DVNKNQMTGFKQDE-PRYPASLTKMMT---LYIIFEYLQSKKLHLNTQIP 105
           DV    +   K  + P  PAS TK++T     +        KL L+ +I 
Sbjct: 81  DVTTGNVVLAKNPQLPLLPASSTKVLTVSAALL--------KLDLDDRIT 122


>gi|254521974|ref|ZP_05134029.1| beta-lactamase [Stenotrophomonas sp. SKA14]
 gi|219719565|gb|EED38090.1| beta-lactamase [Stenotrophomonas sp. SKA14]
          Length = 530

 Score = 40.2 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 30/104 (28%), Gaps = 23/104 (22%)

Query: 23  YIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIV----------IDVNKNQMTGFKQD 72
           + +R +  M  +          A         +++V            V   Q+     +
Sbjct: 9   HARRGLC-MAALAVFPAATAQPADTASLDADVAAVVRAEHLPGLAMAVVENGQVVYRHAE 67

Query: 73  EPR------------YPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
             R              AS +K MT  ++   +Q  +L  +  +
Sbjct: 68  GKRGDGGRLDEDTLFKIASNSKAMTAALLARLVQQGRLRWDDPV 111


>gi|119946899|ref|YP_944579.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Psychromonas ingrahamii 37]
 gi|119865503|gb|ABM04980.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Psychromonas ingrahamii 37]
          Length = 480

 Score = 40.2 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 11/68 (16%)

Query: 30 LMGKILFLSIIMIS---MASELHAKPKY-------SSIVIDVNKNQMTGFKQDE-PRYPA 78
          +  +IL  ++ ++    +A +  A           S +V+D   NQ+      E  R PA
Sbjct: 1  MFKRILCFALFLLPVNLLADQWSALHALLPKGTQLSYLVLDPANNQLLAESNAEILRTPA 60

Query: 79 SLTKMMTL 86
          SL K++T 
Sbjct: 61 SLQKLLTA 68


>gi|145298675|ref|YP_001141516.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-
          alanine-endopeptidase [Aeromonas salmonicida subsp.
          salmonicida A449]
 gi|142851447|gb|ABO89768.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-
          alanine-endopeptidase [Aeromonas salmonicida subsp.
          salmonicida A449]
          Length = 481

 Score = 40.2 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 30 LMGKILFLSIIMISMASELHAKPKYS---SIVIDVNKNQMTGFKQDEPRYPASLTKMMTL 86
          L+G     S ++ ++       P      +I++  N         D+   PAS  K++T 
Sbjct: 5  LIGFCALFSTLVPTLVQAATLTPPKGGQYAIIVQGNGGIEFARNADDMIAPASTMKVLTA 64

Query: 87 Y 87
           
Sbjct: 65 L 65


>gi|5650761|gb|AAD45935.1|AF062386_1 inhibitor-resistant beta-lactamase [Klebsiella oxytoca]
          Length = 277

 Score = 40.2 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT   N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMGDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|297341432|gb|ADI33307.1| beta-lactamase VEB-1 [Pseudomonas aeruginosa]
          Length = 214

 Score = 40.2 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 58/191 (30%), Gaps = 18/191 (9%)

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
              +   +    L    +I ++       T +P K      T  T EQ +   ++ S N 
Sbjct: 15  ALAVLSEIDKGNLSFEQKIEITPQDLLPKTWSPIKEEFPNGTTLTIEQILNYTVSESDNI 74

Query: 143 VSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
                 + I G  S +KF          I       +         Q         +  L
Sbjct: 75  GCDILLKLIGGTDSVQKFLNANHFTDISIKAN----EEQMHKDWNTQYQNWATPTAMNKL 130

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNH----NKLLNKMH--NIDGIKTGYTRNSGFNIVT 254
           L   +    +  S + + +  +I+       N+L  ++    I   KTG    SG N   
Sbjct: 131 LIDTYNNKNQLLSKKSYDFIWKIMRETTTGSNRLKGQLPKNTIVAHKTGT---SGINNGI 187

Query: 255 SLRYKDDPIVA 265
           +    D  ++ 
Sbjct: 188 AAATNDVGVIT 198


>gi|120408|sp|P17421|FIMDH_DICNO RecName: Full=Probable fimbrial assembly protein fimD, serogroup H1
 gi|580812|emb|CAA36621.1| fimD [Dichelobacter nodosus]
          Length = 394

 Score = 40.2 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 19/27 (70%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           AS+TK++T  ++   +  +KL L+++I
Sbjct: 112 ASVTKVLTSALVLHAINEQKLSLDSKI 138


>gi|120407|sp|P17420|FIMDD_DICNO RecName: Full=Putative fimbrial assembly protein fimD, serogroup D
          Length = 394

 Score = 40.2 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 19/27 (70%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           AS+TK++T  ++   +  +KL L+++I
Sbjct: 112 ASVTKVLTSALVLHAINEQKLSLDSKI 138


>gi|148553711|ref|YP_001261293.1| beta-lactamase [Sphingomonas wittichii RW1]
 gi|148498901|gb|ABQ67155.1| beta-lactamase [Sphingomonas wittichii RW1]
          Length = 418

 Score = 40.2 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT---QNPSKLYLKEKT-YFTTEQGILA 134
           S++K+       + + S +L L+  + V+    T   Q    L L+      T +  ++ 
Sbjct: 115 SVSKLWVSLTALDEVDSGRLDLSRALTVTAKDLTLFHQPIRALALRPGGFQTTGDDLMVR 174

Query: 135 LITRSANDVSTAFGEFISGSEK 156
            +T+S N  +      + G + 
Sbjct: 175 ALTQSDNSANDRLLHQVGGPDA 196


>gi|317506608|ref|ZP_07964400.1| penicillin binding protein transpeptidase domain-containing protein
           [Segniliparus rugosus ATCC BAA-974]
 gi|316255117|gb|EFV14395.1| penicillin binding protein transpeptidase domain-containing protein
           [Segniliparus rugosus ATCC BAA-974]
          Length = 616

 Score = 40.2 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 41/134 (30%), Gaps = 34/134 (25%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPRYPA-----------------------SLTKMMTLYIIF 90
            S++V+D    ++     D    PA                       S+ K++T   + 
Sbjct: 272 VSAVVLDAKTGEVLAMANDSTFDPARGLANADPDSLGNLAITSPFEPGSVNKVITASGVI 331

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKL--YLKEKTYFTTEQGILALITRSANDVSTAFG 148
           EY      + +  IPV           +  +L   T          +   S+N  +    
Sbjct: 332 EY---GLSNPDEVIPV-PGLLQMGGVSIHDFLSHGTQ---RLTTAGIFGFSSNIGTLMLA 384

Query: 149 EFISGSEKKFAILM 162
           + +   E +F  L+
Sbjct: 385 QRLG--EDRFMDLV 396


>gi|294637823|ref|ZP_06716095.1| beta-lactamase [Edwardsiella tarda ATCC 23685]
 gi|291089022|gb|EFE21583.1| beta-lactamase [Edwardsiella tarda ATCC 23685]
          Length = 383

 Score = 40.2 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           + D     ASLTK+MT  ++ +     K+ L    P+S+ A
Sbjct: 81  RPDSLIRIASLTKLMTSEVLVKLDAEGKVKLTD--PLSRYA 119


>gi|84782649|gb|ABC61673.1| beta-lactamase CTX-M-14 [Klebsiella pneumoniae]
          Length = 212

 Score = 40.2 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|257059681|ref|YP_003137569.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Cyanothece sp. PCC
           8802]
 gi|256589847|gb|ACV00734.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Cyanothece sp. PCC
           8802]
          Length = 427

 Score = 40.2 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 76/222 (34%), Gaps = 28/222 (12%)

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
           + ++L ++     T  + +  +   S N ++    +   GS        + KA  +  + 
Sbjct: 230 DGTQLLIR-HQSLTVAELLKEMNLYSNNPMAEMLAQLAGGSI--VVAQTAAKAANLSPEE 286

Query: 174 TIYKNASGLHDKNQITTARDQAILGIL---LRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
               N SGL  +N+I+     A+L  +   L+ N  +    F +        +       
Sbjct: 287 IQLINGSGLGVENRISPRASVAMLMAIEDKLKDNPLKVSDLFPMAGRDTTGTVQW----- 341

Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEK 290
              + +   +KTG                    V+ + G+  ++ER Q    +I S    
Sbjct: 342 -RNIPDGVAVKTGTLNQ----------------VSALAGVIPTKERGQVWFSIINSGSNV 384

Query: 291 KTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKA 332
              + +Q +    L+       ++  K  + Y    K + KA
Sbjct: 385 DRFRVEQDNLLQRLAQHWQLTPIISNKETKPYLGDPKRNLKA 426


>gi|8469130|sp|O65976|BLC6_SALTY RecName: Full=Beta-lactamase CTX-M-6; AltName: Full=Cefotaximase 6;
           Flags: Precursor
 gi|3021579|emb|CAA06312.1| CTX-M-7 [Salmonella typhimurium]
          Length = 291

 Score = 40.2 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV--SKTAATQNPSKL 118
            + +Q+     DE     S +K+M    + +  +S K  LN ++ +  S        ++ 
Sbjct: 56  ADNSQILYV-ADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIRASDLVNYNPIAEK 114

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           ++      T  Q     +  S N         + G +K   FA  + ++  ++
Sbjct: 115 HV--NGTMTLAQLGAGALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 165


>gi|146260182|gb|ABQ14421.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 40.2 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 13/126 (10%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYI---IFEYLQSKKLHLNTQIPVS 107
            +   I +D+N  ++    + E R+P  S  K+    +   +   + + +  L  +I  S
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMVSTFKV---LLRGAVLSRIDAGQEQLGRRIHYS 88

Query: 108 KTAATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMS 163
           +    +    ++ +L +    T  +   A IT S N  +      I G ++   F   M 
Sbjct: 89  QNDLVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMG 146

Query: 164 NKAKKI 169
           +   ++
Sbjct: 147 DHVTRL 152


>gi|126737404|ref|ZP_01753139.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Roseobacter sp. SK209-2-6]
 gi|126721989|gb|EBA18692.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Roseobacter sp. SK209-2-6]
          Length = 495

 Score = 40.2 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 43 SMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFE 91
          ++ +E   + + +  V D    ++      D    PAS+ K +T     +
Sbjct: 48 ALLAEAGLRGQIACAVADAASGKLLEAHAGDMELPPASVAKALTALYALD 97


>gi|208503083|gb|ACI29348.1| extended spectrum CTX-M-86 beta-lactamase [Salmonella enterica
           subsp. enterica serovar Agona]
          Length = 291

 Score = 40.2 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 61/168 (36%), Gaps = 26/168 (15%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLYLK--EK 123
              + DE     S +K+M    + +  +++K  LN  + +        NP   + +    
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNP---FAEKHVN 117

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
              T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 118 GTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|269140436|ref|YP_003297137.1| beta-lactamase/D-alanine carboxypeptidase [Edwardsiella tarda
           EIB202]
 gi|267986097|gb|ACY85926.1| beta-lactamase/D-alanine carboxypeptidase [Edwardsiella tarda
           EIB202]
 gi|304560229|gb|ADM42893.1| Penicillin-binding protein AmpH [Edwardsiella tarda FL6-60]
          Length = 383

 Score = 40.2 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           + D     ASLTK+MT  ++ +     K+ L    P+S+ A +
Sbjct: 81  RPDSLIRIASLTKLMTSEVLVKLDAEGKVKLTD--PLSRYAPS 121


>gi|14700044|gb|AAK71474.1| TEM-89 beta-lactamase [Proteus mirabilis]
          Length = 278

 Score = 40.2 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-SKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+      +P ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT   N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMGDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|307239013|gb|ADN39479.1| beta-lactamase VEB-1 [Pseudomonas aeruginosa]
          Length = 212

 Score = 40.2 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 58/191 (30%), Gaps = 18/191 (9%)

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
              +   +    L    +I ++       T +P K      T  T EQ +   ++ S N 
Sbjct: 13  ALAVLSEIDKGNLSFEQKIEITPQDLLPKTWSPIKEEFPNGTTLTIEQILNYTVSESDNI 72

Query: 143 VSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200
                 + I G  S +KF          I       +         Q         +  L
Sbjct: 73  GCDILLKLIGGTDSVQKFLNANHFTDISIKAN----EEQMHKDWNTQYQNWATPTAMNKL 128

Query: 201 LRKNFPQYYKYFSIRKFRYRNRIITNH----NKLLNKMH--NIDGIKTGYTRNSGFNIVT 254
           L   +    +  S + + +  +I+       N+L  ++    I   KTG    SG N   
Sbjct: 129 LIDTYNNKNQLLSKKSYDFIWKIMRETTTGSNRLKGQLPKNTIVAHKTGT---SGINNGI 185

Query: 255 SLRYKDDPIVA 265
           +    D  ++ 
Sbjct: 186 AAATNDVGVIT 196


>gi|306828587|ref|ZP_07461781.1| beta-lactamase [Streptococcus mitis ATCC 6249]
 gi|304429195|gb|EFM32281.1| beta-lactamase [Streptococcus mitis ATCC 6249]
          Length = 422

 Score = 40.2 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 38/109 (34%), Gaps = 13/109 (11%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           ++  +  G  +D   Y AS+ K+   Y+    + +   +  L++         +   S  
Sbjct: 207 LSTGKEAGVNEDNKLYAASILKL--AYLYYAQDKINQGEYTLDSSFKYIPEVNSFPGSYK 264

Query: 119 YLKEKT--------YFTTEQGILALITRSANDVSTAFGEFISG-SEKKF 158
                +         ++ +Q I  +   S N      G +++  S+  F
Sbjct: 265 PEGSGSLPKKEDNKEYSLQQLITKVTKESDNVAHNILGYYVTNQSDGAF 313


>gi|296140348|ref|YP_003647591.1| peptidoglycan glycosyltransferase [Tsukamurella paurometabola DSM
           20162]
 gi|296028482|gb|ADG79252.1| Peptidoglycan glycosyltransferase [Tsukamurella paurometabola DSM
           20162]
          Length = 654

 Score = 40.2 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 42/141 (29%), Gaps = 51/141 (36%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYPA------------------------SLTKMMTLYIIFE 91
           ++V+D    Q+     D    PA                        S+ K++T  +   
Sbjct: 317 AVVLDAKTGQVISMANDSTFNPAIGVNNNPKSARTGNLPVSTPFEPGSVNKLITA-VA-- 373

Query: 92  YLQSKKLHLNTQIPVSKTAATQNPS-KLYLKEKTYFTTEQGI---------LALITRSAN 141
            +++ K   +  + V         S ++     +  T +              +  +S+N
Sbjct: 374 AIENGKTKPDEVLQV-------PGSIRM-----SGVTVKDAWAHGTEPYTTTGVFGKSSN 421

Query: 142 DVSTAFGEFISGSEKKFAILM 162
             +    + +   E  FA  +
Sbjct: 422 VGTLMLAQRVG--EDAFADYV 440


>gi|195927602|pdb|3DTM|A Chain A, Increased Folding Stability Of Tem-1 Beta-Lactamase By In-
           Vitro Selection
          Length = 263

 Score = 40.2 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    I   + + +  L  +I  S+  
Sbjct: 17  ARVGYIELDLNSGKILESFRSEERFPMMSTFKVLLCGAILSRIDAGQEQLGRRIHYSQND 76

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G      F   M +  
Sbjct: 77  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKGLTAFLHNMGDHV 134

Query: 167 KKI 169
            ++
Sbjct: 135 TRL 137


>gi|84495976|ref|ZP_00994830.1| putative cell division protein FtsI/penicillin-binding protein
           [Janibacter sp. HTCC2649]
 gi|84382744|gb|EAP98625.1| putative cell division protein FtsI/penicillin-binding protein
           [Janibacter sp. HTCC2649]
          Length = 617

 Score = 40.2 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 40/117 (34%), Gaps = 26/117 (22%)

Query: 56  SIVIDVNKNQMT-------GFKQD--------------EPRYPASLTKMMTLYIIFEYLQ 94
           ++V++   +++            D              +   P S  K+MT   I   ++
Sbjct: 270 AVVMNAKTSEILALASYPTYDPNDIGSAKGSLVNKALNDVFEPGSTAKVMT---IAAAIE 326

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
            KK+  +  + +       +   L+     + T  + +   +  S+N  +   GE +
Sbjct: 327 DKKVTPDQPVVIPNRMKRYDA--LFKDSHDHPTLNRTVAGTLAESSNIGTILIGETL 381


>gi|319440250|ref|ZP_07989406.1| penicillin-binding protein [Corynebacterium variabile DSM 44702]
          Length = 640

 Score = 40.2 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 38/147 (25%)

Query: 55  SSIVIDVNKNQMTG-------------FKQ------------DEPRYPASLTKMMTLYII 89
           S++V+D    ++                KQ            +    P S+ K+MT    
Sbjct: 298 SAVVLDAKSAEVIAMATSDTINPMGDLDKQVDQGKEFTNRVVENAFEPGSVAKIMTA--- 354

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEK-TYFTTEQGILALITRSANDVSTAFG 148
              ++  K   +  + V     T   S + +K+   +         +  +S+N  +    
Sbjct: 355 AAAIEEGKTTPDEVLQV---PGTIEMSGVTVKDAWDHGVVPYTTTGVFGKSSNVGTLMLA 411

Query: 149 EFISGSEKKFAILMSN----KAKKIGM 171
           + +   E KF+  + N    +A  +G+
Sbjct: 412 DRVG--EDKFSEYLHNFGIGQASDLGL 436


>gi|326319266|ref|YP_004236938.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323376102|gb|ADX48371.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 485

 Score = 40.2 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 10/92 (10%)

Query: 51  KPKYSSIVIDVNKNQ--MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
               + +V D +  Q     ++  E   PAS+ K++T Y   E L       +T  PV  
Sbjct: 51  ADAVAFVVADADGRQPPRLSWRAQESMNPASVMKLVTTYAALELLGPA-YTWDT--PVYL 107

Query: 109 TAATQNPS---KLYLK-EKT-YFTTEQGILAL 135
            A  Q  S    +Y+K         E+  L L
Sbjct: 108 DARPQGGSLRGNVYIKGVGDPQLVMERLWLML 139


>gi|226359709|ref|YP_002777487.1| hypothetical protein ROP_02950 [Rhodococcus opacus B4]
 gi|226238194|dbj|BAH48542.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 298

 Score = 40.2 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 13/120 (10%)

Query: 71  QDEPRYPASLTKMMTLYIIF-EYLQSKKLHLNTQIPVSKTAATQNPSKL-YLKEKTYFTT 128
            D+    AS+ K+  L +      +S +L     + V+    T  P+ +   ++    + 
Sbjct: 37  ADDLVVLASVYKL-PLLVALCRAFESGELSPTATVRVNPADCTPGPTGVSTFRDPVVLSW 95

Query: 129 EQGILALITRSANDVS-TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
               L+++T S N  +    G+    S +            +G+ NT      G  D + 
Sbjct: 96  RDLALSMMTVSDNAAADLVLGQVGLESVE-------RALSDLGLTNTRIIG--GTADAHH 146


>gi|112785126|gb|ABI20753.1| CTX extended-spectrum beta-lactamase [Escherichia coli]
          Length = 291

 Score = 40.2 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTQAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|105958774|gb|ABF81660.1| beta-lactamase [Cloning vector pRKW2]
 gi|218533933|gb|ACK87037.1| beta-lactamase [Cloning vector AbVec-hIgG1]
 gi|218533936|gb|ACK87039.1| beta-lactamase [Cloning vector AbVec-hIgKappa]
 gi|220062124|gb|ACL79637.1| beta lactamase [pBR322 based IG-lambda expression vector]
          Length = 286

 Score = 40.2 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +     + +  L  +I  S+    +    ++ +L +    T  +   
Sbjct: 65  PMMSTFKVLLCGAVLSRDDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|309951208|emb|CBL80615.1| beta-lactamase [Kluyvera ascorbata]
          Length = 291

 Score = 40.2 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S K  LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAALLKQSESDKHLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
               T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 115 HVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 165


>gi|307266055|ref|ZP_07547601.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306918924|gb|EFN49152.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 350

 Score = 40.2 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 55/172 (31%), Gaps = 22/172 (12%)

Query: 59  IDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID+N  Q       +    AS  K+ +  Y+ +  +   K+  N ++  ++         
Sbjct: 193 IDLNTGQTFEINGYDSFIAASTYKVPLNFYL-YTLITDGKIDPNMKVQYTQADYEGGAGS 251

Query: 118 LYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
           +      +Y+T  +     I  S N  S      +               + +G     Y
Sbjct: 252 IQADPVGSYYTIRELSRRSIEESDNIASNMIMRVVGR------DNYIKFMESLGANVIPY 305

Query: 177 KNASGLHDKNQITTARDQAILGILLR---KNFPQYYK--YFSIRKFRYRNRI 223
            +         +T+ RD ++    L    K  P       + ++   Y +RI
Sbjct: 306 NS--------NVTSPRDMSMYMENLLNYVKAHPDTAGELMYYLKNTIYNDRI 349


>gi|256619011|ref|ZP_05475857.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256598538|gb|EEU17714.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
          Length = 315

 Score = 40.2 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 9/122 (7%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKL 98
           ++++   E       S +  D+   +          Y AS  K+ +T+ +  + + S + 
Sbjct: 71  LLVASVKEFEGTVGISYL--DLETGERRSVNGQHEFYTASTIKVPLTMLVA-DTVASGQK 127

Query: 99  HLNTQIPVSKTAATQNPSKL---YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                IP +     +  + +    ++    +  +      IT S N       + + G  
Sbjct: 128 KWTDLIPYNAEEDYEEGTGIIAYNIQP--KYPLKTLQEYAITYSDNIAKNMLYDTLGGDA 185

Query: 156 KK 157
           K 
Sbjct: 186 KA 187


>gi|66932799|gb|AAY58237.1| extended-spectrum beta-lactamase CTX-M-13 [Escherichia coli]
          Length = 283

 Score = 40.2 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 61/162 (37%), Gaps = 18/162 (11%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHA-KPKYSSI-----------VIDVNKN-QMTGFK 70
           +QR +      + L +    + ++  A + K +++           +ID   N Q+   +
Sbjct: 6   MQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTKDNTQVLY-R 64

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTYFTTE 129
            DE     S +K+M    + +  +++K  LN  + + K A   N + +  K      T  
Sbjct: 65  GDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGTMTLA 123

Query: 130 QGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
           +   A +  S N         +   G    FA  + ++  ++
Sbjct: 124 ELSAAALQYSDNTAMNKLIAQLGGPGGVTAFAREIGDETFRL 165


>gi|8101044|gb|AAF72531.1|AF252623_1 beta-lactamase CTX-M-13 [Klebsiella pneumoniae]
          Length = 291

 Score = 40.2 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 61/162 (37%), Gaps = 18/162 (11%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHA-KPKYSSI-----------VIDVNKN-QMTGFK 70
           +QR +      + L +    + ++  A + K +++           +ID   N Q+   +
Sbjct: 6   MQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTKDNTQVLY-R 64

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTYFTTE 129
            DE     S +K+M    + +  +++K  LN  + + K A   N + +  K      T  
Sbjct: 65  GDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGTMTLA 123

Query: 130 QGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
           +   A +  S N         +   G    FA  + ++  ++
Sbjct: 124 ELSAAALQYSDNTAMNKLIAQLGGPGGVTAFAREIGDETFRL 165


>gi|310793488|gb|EFQ28949.1| beta-lactamase [Glomerella graminicola M1.001]
          Length = 393

 Score = 40.2 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 11/81 (13%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP--VSKTAA------ 111
           D+N  +            AS+TK+ T     + ++   L L+  +   V + A       
Sbjct: 40  DLNTKKSLAADNILTL--ASVTKLFTTIAALQLVERGILSLDQDVSKHVPELAEKPVLTG 97

Query: 112 -TQNPSKLYLKEKTYFTTEQG 131
            T++ S + ++ K   T    
Sbjct: 98  FTESGSPIEVQRKNPITLRHL 118


>gi|238921308|ref|YP_002934823.1| beta-lactam binding protein AmpH [Edwardsiella ictaluri 93-146]
 gi|238870877|gb|ACR70588.1| beta-lactamase/D-alanine carboxypeptidase [Edwardsiella ictaluri
           93-146]
          Length = 383

 Score = 40.2 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           + D     ASLTK+MT  ++ +     K+ L    P+S+ A +
Sbjct: 81  RPDSLIRIASLTKLMTSEVLVKLDAEGKVKLTD--PLSRYAPS 121


>gi|112785108|gb|ABI20744.1| TEM extended-spectrum beta-lactamase [Escherichia coli]
          Length = 286

 Score = 40.2 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  P-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + + +  L  +I  S+    +    ++ +L +       +   
Sbjct: 65  PMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MAVRELCS 122

Query: 134 ALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           A IT S N  +      I G ++   F   M +   ++
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|329894439|ref|ZP_08270286.1| beta-lactamase [gamma proteobacterium IMCC3088]
 gi|328923086|gb|EGG30410.1| beta-lactamase [gamma proteobacterium IMCC3088]
          Length = 439

 Score = 40.2 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/112 (10%), Positives = 41/112 (36%), Gaps = 31/112 (27%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSIV----------------IDVNKNQMT 67
            + +++ +  I  +S ++++ +S+  A+     ++                I+    ++ 
Sbjct: 10  CRSHLRGVIGIALISALILACSSQEQARELTHKVLKDEVIGKEAYPFLLVYIETASGEVL 69

Query: 68  GF---------------KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
                            K D+     S+TK++T  +  + ++   + L  ++
Sbjct: 70  VSESVASEAFFAPTETPKVDDWMRIWSMTKLVTTVLTLDLIEDGVISLEDEV 121


>gi|320033110|gb|EFW15059.1| predicted protein [Coccidioides posadasii str. Silveira]
          Length = 579

 Score = 40.2 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 20/79 (25%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIP--VSKTAATQNPSKLYLKEKTYFTTEQGILA 134
            AS+TK++T+Y++   ++S    L+ +I   + + AA          E          L 
Sbjct: 112 IASITKLLTVYVLL--IESGFEVLDEKITKYIPELAAVPKG-----VETDTVQWNDITLG 164

Query: 135 LITRSANDVSTAFGEFISG 153
                      A    ++G
Sbjct: 165 -----------ALATHLAG 172


>gi|303320825|ref|XP_003070407.1| penicillin-binding protein, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240110103|gb|EER28262.1| penicillin-binding protein, putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 622

 Score = 40.2 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 20/79 (25%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIP--VSKTAATQNPSKLYLKEKTYFTTEQGILA 134
            AS+TK++T+Y++   ++S    L+ +I   + + AA          E          L 
Sbjct: 112 IASITKLLTVYVLL--IESGFEVLDEKITKYIPELAAVPKG-----VETDTVQWNDITLG 164

Query: 135 LITRSANDVSTAFGEFISG 153
                      A    ++G
Sbjct: 165 -----------ALATHLAG 172


>gi|73535720|pdb|1YT4|A Chain A, Crystal Structure Of Tem-76 Beta-Lactamase At 1.4 Angstrom
           Resolution
          Length = 263

 Score = 39.9 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 48/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 17  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 76

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT   N  +      I G ++   F   M +  
Sbjct: 77  LVEYSPVTEKHLTDG--MTVRELCSAAITMGDNTAANLLLTTIGGPKELTAFLHNMGDHV 134

Query: 167 KKI 169
            ++
Sbjct: 135 TRL 137


>gi|315498017|ref|YP_004086821.1| beta-lactamase [Asticcacaulis excentricus CB 48]
 gi|315416029|gb|ADU12670.1| Beta-lactamase [Asticcacaulis excentricus CB 48]
          Length = 310

 Score = 39.9 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 5/90 (5%)

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           + T   + + +   KL +  +I  SK      +P       K   T      A +  S N
Sbjct: 83  LATA--VLKAVDDGKLSVTQEIRYSKADLLDHSPVTEKHVPKGRLTVGDLCSAAVAVSDN 140

Query: 142 DVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             +      I G      F   + +   ++
Sbjct: 141 AAANLLLPLIGGPAGLTAFVRGLGDMVTRL 170


>gi|148524825|dbj|BAF63422.1| cefotaximase [Shigella sonnei]
 gi|256576422|gb|ACU87985.1| extended-spectrum beta-lactamase CTX-M-64 [Enterobacter cloacae]
 gi|256576426|gb|ACU87987.1| extended-spectrum beta-lactamase CTX-M-64 [Escherichia coli]
          Length = 291

 Score = 39.9 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
            + +Q+   + DE     S +K+M    + +  +++K  LN  + + K A   N + +  
Sbjct: 56  ADNSQILY-RADERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAE 113

Query: 121 K-EKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
           K      T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 114 KHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|322703734|gb|EFY95338.1| D-stereospecific peptide hydrolase [Metarhizium anisopliae ARSEF
           23]
          Length = 384

 Score = 39.9 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 12/60 (20%)

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           S+TK+ T  +I + ++  KL+L+    VS+           L  +TY   +    A I++
Sbjct: 63  SITKVFTATVILQLIEEGKLNLSD--TVSQH----------LSPETYANIDDAANASISQ 110


>gi|255065510|ref|ZP_05317365.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Neisseria sicca ATCC 29256]
 gi|255050335|gb|EET45799.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Neisseria sicca ATCC 29256]
          Length = 479

 Score = 39.9 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 2/93 (2%)

Query: 14  FLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTG-FKQD 72
            L   + +I   R    +  +  LS+   ++      + + S  V +++   +    + +
Sbjct: 1   MLYVFFRTIMKLRQTAALLWLSILSLPAFAIDFGRIPQDEISVYVQELDSGNVLVDHRSN 60

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
            P  PAS  K++T +  F+ L        TQ  
Sbjct: 61  VPVNPASTMKLVTAFAAFKAL-GGDYRWTTQFK 92


>gi|329851782|ref|ZP_08266463.1| beta-lactamase [Asticcacaulis biprosthecum C19]
 gi|328839631|gb|EGF89204.1| beta-lactamase [Asticcacaulis biprosthecum C19]
          Length = 368

 Score = 39.9 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 30/101 (29%)

Query: 29  QLMGKILFLSIIMISMASELHAKPKYSSIVIDVN------KNQMTGFKQDEP-------- 74
            L+   L L++ M  +++   A    +  VI+           +   K  +P        
Sbjct: 9   TLLAIALSLAVAMTGLSNPALADGGAARSVINDEAKAGLFSGAVIILKNGKPILDHGWGL 68

Query: 75  ---------------RYPASLTKMMTLYIIFEYLQSKKLHL 100
                          RY AS+TK +T  ++F+ +Q+ ++ L
Sbjct: 69  ADRATGRRWKTSTPTRY-ASVTKQITALLVFQEVQAGRIDL 108


>gi|262042378|ref|ZP_06015540.1| penicillin-binding protein AmpH [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040286|gb|EEW41395.1| penicillin-binding protein AmpH [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 383

 Score = 39.9 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D     ASL+K+MT  ++ + L    + LN   P+SK A     +++   +    T    
Sbjct: 76  DSVIRIASLSKLMTSEMLVKLLDQGVVKLND--PLSKYA--PPGARVPDWQGKPITLVNL 131


>gi|297199386|ref|ZP_06916783.1| beta-lactamase [Streptomyces sviceus ATCC 29083]
 gi|197715282|gb|EDY59316.1| beta-lactamase [Streptomyces sviceus ATCC 29083]
          Length = 271

 Score = 39.9 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 53/157 (33%), Gaps = 19/157 (12%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDE-PRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           P  ++ V+  +   + G       R+P AS+TK +  Y +    +   + L+        
Sbjct: 15  PTAAAGVVRAD-GTVLGTHGPAGHRFPLASVTKPLAAYAVLVAYEEGAVELDEP------ 67

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRS-----ANDVSTAFGEFIS-GSEKKFAILMS 163
           A     +  +L   T                    +N      G+ ++  ++  FA  + 
Sbjct: 68  AGPSGSTVRHLLAHTSGLAFDEHRVTAAPGERRLYSNAGFEQLGDHVAKATDIPFAEYLR 127

Query: 164 NKAKK-IGMQNTIYKNASGLHDKNQITTARDQAILGI 199
               + +GM +T   +  G   K+ ++T  D      
Sbjct: 128 QAVLEPLGMTST---SLEGSPAKDGVSTVEDLLRFAA 161


>gi|119716933|ref|YP_923898.1| beta-lactamase [Nocardioides sp. JS614]
 gi|119537594|gb|ABL82211.1| beta-lactamase [Nocardioides sp. JS614]
          Length = 417

 Score = 39.9 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 16/33 (48%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
            D      S+TK MT  ++ + ++  +L L+  
Sbjct: 23  ADVQYRIGSITKTMTAVLVLQLVRDGRLGLDEP 55


>gi|116627486|ref|YP_820105.1| MutT/nudix family protein [Streptococcus thermophilus LMD-9]
 gi|116100763|gb|ABJ65909.1| NUDIX family hydrolase [Streptococcus thermophilus LMD-9]
          Length = 152

 Score = 39.9 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 1/86 (1%)

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
              +     ++ ++ N+     G  I   E  F+ L     ++IG   T      G  D+
Sbjct: 24  IPNQDKTKIILVQAPNEAWFLPGGEIEAGEDHFSALKRELIEEIGYTAT-LGQYYGQADE 82

Query: 186 NQITTARDQAILGILLRKNFPQYYKY 211
              ++ RD              + + 
Sbjct: 83  YFYSSHRDTYYYNPAYIYEVVDFSEI 108


>gi|146293130|ref|YP_001183554.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Shewanella putrefaciens CN-32]
 gi|145564820|gb|ABP75755.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Shewanella putrefaciens CN-32]
          Length = 504

 Score = 39.9 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 46 SELHAKPKYSSIV-IDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
          ++++ +   ++++ +D+  NQ+   +Q D    PAS  K++T       L
Sbjct: 44 ADINPRHSQTALLALDLANNQILYSQQADTLLVPASTQKILTAVTAMAEL 93


>gi|300770260|ref|ZP_07080139.1| beta-lactamase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762736|gb|EFK59553.1| beta-lactamase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 396

 Score = 39.9 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           AS+TK MT   I + ++  KL L+  +
Sbjct: 104 ASVTKPMTSIAILKLVEEGKLKLDQTV 130


>gi|120598793|ref|YP_963367.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Shewanella sp. W3-18-1]
 gi|120558886|gb|ABM24813.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Shewanella sp. W3-18-1]
          Length = 504

 Score = 39.9 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 46 SELHAKPKYSSIV-IDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
          ++++ +   ++++ +D+  NQ+   +Q D    PAS  K++T       L
Sbjct: 44 ADINPRHSQTALLALDLANNQILYSQQADTLLVPASTQKILTAVTAMAEL 93


>gi|94502850|gb|ABF29655.1| beta-lactamase [Enterobacter cloacae]
          Length = 256

 Score = 39.9 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 58  VIDVNKN-QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           +ID   N Q+   + DE     S +K+M    + +  +++K  LN  + + K A   N +
Sbjct: 36  LIDTKDNTQVLY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYN 93

Query: 117 KLYLK-EKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            +  K      T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 94  PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFAREIGDETFRL 149


>gi|330006851|ref|ZP_08305727.1| beta-lactamase [Klebsiella sp. MS 92-3]
 gi|328535694|gb|EGF62139.1| beta-lactamase [Klebsiella sp. MS 92-3]
          Length = 382

 Score = 39.9 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D     ASL+K+MT  ++ + L    + LN   P+SK A     +++   +    T    
Sbjct: 76  DSVIRIASLSKLMTSEMLVKLLDQGVVKLND--PLSKYA--PPGARVPDWQGKPITLVNL 131


>gi|320160619|ref|YP_004173843.1| hypothetical protein ANT_12090 [Anaerolinea thermophila UNI-1]
 gi|319994472|dbj|BAJ63243.1| hypothetical protein ANT_12090 [Anaerolinea thermophila UNI-1]
          Length = 325

 Score = 39.9 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 22/121 (18%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVN---------KNQMTGF-KQDEPRYPASLTKMMTL 86
           L  I  + A +  A    S ++ D             ++    + DE  +PAS+ K+   
Sbjct: 63  LPSITQAPAFQSFAVQPLSQMLEDGADWHVWVKELGGRVLFEWRSDEIIHPASIVKVPLG 122

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTA 146
            ++ E L+         +        + P+          +  Q + A++  S  D +  
Sbjct: 123 MLVLETLEKGTEEPLDLV------LDKGPTGAG------RSYRQLLRAMLVYSEEDATEI 170

Query: 147 F 147
            
Sbjct: 171 L 171


>gi|168703612|ref|ZP_02735889.1| serine-type D-Ala-D-Ala carboxypeptidase [Gemmata obscuriglobus
          UQM 2246]
          Length = 520

 Score = 39.9 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 4/38 (10%)

Query: 57 IVIDVNKNQMTGFKQDEPR-YPASLTKMMT---LYIIF 90
          +++D         +  +    PAS+TK+ T     +  
Sbjct: 50 LIVDAKTGGTVYARNPDAMLAPASVTKLFTCAAALVTL 87


>gi|227538729|ref|ZP_03968778.1| beta-lactamase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241238|gb|EEI91253.1| beta-lactamase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 396

 Score = 39.9 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           AS+TK MT   I + ++  KL L+  +
Sbjct: 104 ASVTKPMTSIAILKLVEEGKLKLDQTV 130


>gi|190575006|ref|YP_001972851.1| putative beta-lactamase [Stenotrophomonas maltophilia K279a]
 gi|190012928|emb|CAQ46560.1| putative beta-lactamase [Stenotrophomonas maltophilia K279a]
          Length = 478

 Score = 39.9 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 23/60 (38%), Gaps = 15/60 (25%)

Query: 56  SIVIDVNKNQMTG-----FKQDEPRYPA---------SLTKMMTLYIIFEYLQSKKLHLN 101
           ++++  +  Q+               PA         S+ K++T  ++ + +   K+ L+
Sbjct: 49  AVLV-AHNGQVLYQGASGESDPATHAPATVETIFAAQSMAKLLTSTLVMQLVDQGKVDLD 107


>gi|254499370|ref|ZP_05112038.1| putative D-alanyl-meso-diaminopimelate endopeptidase [Legionella
          drancourtii LLAP12]
 gi|254351399|gb|EET10266.1| putative D-alanyl-meso-diaminopimelate endopeptidase [Legionella
          drancourtii LLAP12]
          Length = 470

 Score = 39.9 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 57 IVI-DVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQS 95
          ++I D    ++   +       PAS TK+ T      Y++ 
Sbjct: 31 VLIKDAQTGEVIYSRNANKLLTPASSTKLFTAAAALYYIKP 71


>gi|224814396|gb|ACN65418.1| beta-lactamase [Klebsiella pneumoniae]
          Length = 286

 Score = 39.9 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 67/193 (34%), Gaps = 21/193 (10%)

Query: 26  RNIQLMGKILFLSIIMISMAS----------ELHAKPKYSSIVIDVNKNQMTGFKQDEPR 75
           R ++L    L  ++ +++ AS          E     +   + +D+   +     +   R
Sbjct: 2   RYVRLCLISLIAALPLVAFASPQPLEQVTRSESQLAGRVGYVEMDLASGRTLAAWRASER 61

Query: 76  YP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAATQNP-SKLYLKEKTYFTTEQGI 132
           +P  S  K++    +   + +    L+ +I    +     +P S+ +L +    T  +  
Sbjct: 62  FPLMSTFKVLLCGAVLARVDAGDEQLDRRIRYRQQDLVDYSPVSEKHLADG--MTVGELC 119

Query: 133 LALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
            A IT S N       + + G      F   + +   ++    T    A     ++  T 
Sbjct: 120 AAAITMSDNSAGNLLLKSVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTP 179

Query: 191 ARDQAILGILLRK 203
           A     +   LRK
Sbjct: 180 A----SMAATLRK 188


>gi|327356868|gb|EGE85725.1| beta-lactamase [Ajellomyces dermatitidis ATCC 18188]
          Length = 404

 Score = 39.9 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 15/56 (26%)

Query: 64  NQMTGFK---------------QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            ++                   +D P Y AS+TK+ T   +   ++   + L+  +
Sbjct: 33  GKVLYSSSHGNTKVDGSGEAVTEDTPFYTASMTKVFTAVAVMVAVERGLITLDDDV 88


>gi|300933360|ref|ZP_07148616.1| penicillin-binding protein [Corynebacterium resistens DSM 45100]
          Length = 638

 Score = 39.9 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 48/155 (30%), Gaps = 34/155 (21%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTG-------------FKQ------------DEPRYPAS 79
           A E       S++V+D    ++                KQ             +   P S
Sbjct: 285 AREKSGAKSVSAVVLDSKTGKILSLASSDSINPNGDIEKQLKQKKVFGDRNTADSFEPGS 344

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEK-TYFTTEQGILALITR 138
           + K+MT       ++ KK   +  + V     +   S + +K+   +         +  +
Sbjct: 345 VAKIMTA---AAAIEEKKTRPDEVLKV---PGSIEMSGVTVKDAWEHGELPLTSTGVFGK 398

Query: 139 SANDVSTAFGEFISGS--EKKFAILMSNKAKKIGM 171
           S+N  +    + +        F      +A  +G+
Sbjct: 399 SSNVGTLMLAQRVGEDKMYDYFRKFGIGQAPGVGL 433


>gi|8469128|sp|O33807|BLC4_SALTY RecName: Full=Beta-lactamase CTX-M-4; AltName: Full=Cefotaximase 4;
           Flags: Precursor
 gi|2462701|emb|CAA74573.1| beta lactamase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 291

 Score = 39.9 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV--SKTAATQNPSKL 118
            + +Q+     DE     S +K+M    + +  +S K  LN ++ +  S        ++ 
Sbjct: 56  ADNSQILYV-ADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIRASDLVNYNPIAEK 114

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           ++      T  +     +  S N         + G +K   FA  + ++  ++
Sbjct: 115 HV--NGTMTLAELGAGALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 165


>gi|326390405|ref|ZP_08211963.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993523|gb|EGD51957.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 417

 Score = 39.9 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 55/172 (31%), Gaps = 22/172 (12%)

Query: 59  IDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID+N  Q       +    AS  K+ +  Y+ +  +   K+  N ++  ++         
Sbjct: 193 IDLNTGQTFEINGYDSFIAASTYKVPLNFYL-YTLITDGKIDPNMKVQYTQADYEGGAGS 251

Query: 118 LYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
           +      +Y+T  +     I  S N  S      +               + +G     Y
Sbjct: 252 IQADPVGSYYTIRELSRRSIEESDNIASNMIMRVVGR------DNYIKFMESLGANVIPY 305

Query: 177 KNASGLHDKNQITTARDQAILGILLR---KNFPQYYK--YFSIRKFRYRNRI 223
            +         +T+ RD ++    L    K  P       + ++   Y +RI
Sbjct: 306 NS--------NVTSPRDMSMYMENLLNYVKAHPDTAGELMYYLKNTIYNDRI 349


>gi|313835714|gb|EFS73428.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Propionibacterium acnes HL037PA2]
 gi|314928386|gb|EFS92217.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Propionibacterium acnes HL044PA1]
 gi|314970192|gb|EFT14290.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Propionibacterium acnes HL037PA3]
 gi|328908033|gb|EGG27792.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Propionibacterium sp. P08]
          Length = 456

 Score = 39.9 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 26/121 (21%)

Query: 38  SIIMISMASELHAKPKYSSI-----------------VIDVNKNQMTG-FKQDEPRYPAS 79
            I+  ++ +   AKP  ++I                 ++D    +      QD    PAS
Sbjct: 55  GIVAAAVPTTPSAKPVAAAIANRVKSAGAAPGVLGADIMDAATGETLYQSGQDSFLTPAS 114

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP-------SKLYLKEKTYFTTEQGI 132
             K++T   + +   +      T++  + +A T          SK   K+  Y + E   
Sbjct: 115 NLKVLTAIALLDCTDAGH-RYTTKVVANGSALTLIGGGDPYLRSKPSTKQPEYPSVEDLA 173

Query: 133 L 133
            
Sbjct: 174 K 174


>gi|261191584|ref|XP_002622200.1| beta-lactamase [Ajellomyces dermatitidis SLH14081]
 gi|239589966|gb|EEQ72609.1| beta-lactamase [Ajellomyces dermatitidis SLH14081]
 gi|239612626|gb|EEQ89613.1| beta-lactamase [Ajellomyces dermatitidis ER-3]
          Length = 411

 Score = 39.9 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 15/56 (26%)

Query: 64  NQMTGFK---------------QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            ++                   +D P Y AS+TK+ T   +   ++   + L+  +
Sbjct: 33  GKVLYSSSHGNTKVDGSGEAVTEDTPFYTASMTKVFTAVAVMVAVERGLITLDDDV 88


>gi|94502839|gb|ABF29649.1| beta-lactamase [Enterobacter cloacae]
          Length = 256

 Score = 39.9 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 58  VIDVNKN-QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           +ID   N Q+   + DE     S +K+M    + +  +++K  LN  + + K A   N +
Sbjct: 35  LIDTKDNTQVLY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYN 92

Query: 117 KLYLK-EKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            +  K      T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 93  PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFAREIGDETFRL 148


>gi|146260153|gb|ABQ14409.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 39.9 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQND 91

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLPLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|297539598|ref|YP_003675367.1| peptidoglycan glycosyltransferase [Methylotenera sp. 301]
 gi|297258945|gb|ADI30790.1| Peptidoglycan glycosyltransferase [Methylotenera sp. 301]
          Length = 586

 Score = 39.9 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 29/130 (22%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTG------FKQDEPR---------------YPASLTKM 83
           A E +     ++IV+D    ++        +  + P                 P S  K 
Sbjct: 251 AVEENKAAAGAAIVLDAKTGEVLAMTNVPTYNPNNPVNIKGKTRNRAIVDTFEPGSTLKP 310

Query: 84  MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-YLKEKTYFTTEQGILALITRSAND 142
           +T     E   S +   +T+I  S  + T  P+ +     +   T  Q    +I +S+N 
Sbjct: 311 VTAAAALE---SGQYTPDTKIQTSPGSLTIGPATIHDSHPQGILTVAQ----VIQKSSNV 363

Query: 143 VSTAFGEFIS 152
            ++     + 
Sbjct: 364 GASKIALTLD 373


>gi|285026679|gb|ACZ02434.2| extended spectrum beta-lactamase VEB-1 [Providencia rettgeri]
          Length = 261

 Score = 39.9 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 64/209 (30%), Gaps = 22/209 (10%)

Query: 70  KQDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKT 124
             D      S+ K  +     +   +    L    +I ++       T +P K      T
Sbjct: 33  NNDFHFPMQSVMKFPI--ALAVLSEIDKGNLSFEQKIEITPQDLLPKTWSPIKEEFPNGT 90

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNASGL 182
             T EQ +   ++ S N       + I G  S +KF          I             
Sbjct: 91  TLTIEQILNYTVSESDNIGCDILLKLIGGTDSVQKFLNANHFTDISIKANEEQMHKDWNT 150

Query: 183 HDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH----NKLLNKMH--N 236
             +N  T       +  LL   +    +  S + + +  +I+       N+L  ++    
Sbjct: 151 QYQNWATP----TAMNKLLIDTYNNKNQLLSKKSYDFIWKIMRETTTGSNRLKGQLPKNT 206

Query: 237 IDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           I   KTG    SG N   +    D  ++ 
Sbjct: 207 IVAHKTGT---SGINNGIAAATNDVGVIT 232


>gi|316931589|ref|YP_004106571.1| beta-lactamase [Rhodopseudomonas palustris DX-1]
 gi|315599303|gb|ADU41838.1| Beta-lactamase [Rhodopseudomonas palustris DX-1]
          Length = 291

 Score = 39.9 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 71/193 (36%), Gaps = 13/193 (6%)

Query: 18  PYGSIYIQRNIQLMGKILFLSI----IMISMASELHAKP--KYSSIVIDVNKNQMTGFKQ 71
             G+      + ++G+    +      + +  +EL A+   +    V+D +  +M G + 
Sbjct: 7   MVGAAACLAGVGMIGRRAATATEPGDAIAARFAELEARSGGRLGVCVLDSSNGRMIGHRL 66

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLYLKEKTYFTTEQ 130
           DE     S  K++   ++   +  K+  L+ ++  +K+   T +P+     E    T  +
Sbjct: 67  DERFPMCSTFKVLAAGLVLARVDRKQESLDRRVSYTKSDLVTYSPATETRVEGG-MTIAE 125

Query: 131 GILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
              A IT S N           G      FA  + ++  ++    T    A     ++  
Sbjct: 126 LCEAAITLSDNTAGNLLLGSFGGPAGLTAFARSLGDQTTRLDRIETELNEALPGDARDTT 185

Query: 189 TT---ARDQAILG 198
           +    A+D   L 
Sbjct: 186 SPRTIAQDLRALA 198


>gi|293364525|ref|ZP_06611250.1| beta-lactamase [Streptococcus oralis ATCC 35037]
 gi|307702815|ref|ZP_07639765.1| hypothetical protein SMSK23_0768 [Streptococcus oralis ATCC 35037]
 gi|291317033|gb|EFE57461.1| beta-lactamase [Streptococcus oralis ATCC 35037]
 gi|307623671|gb|EFO02658.1| hypothetical protein SMSK23_0768 [Streptococcus oralis ATCC 35037]
          Length = 422

 Score = 39.9 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 38/109 (34%), Gaps = 13/109 (11%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           ++  +  G  +D   Y AS+ K+   Y+    + +   +  L++         +   S  
Sbjct: 207 LSTGKEAGVNEDSKLYAASILKL--AYLYYAQDKINQGEYTLDSSFKYVPEVNSFPGSYK 264

Query: 119 YLKEKT--------YFTTEQGILALITRSANDVSTAFGEFISG-SEKKF 158
                +         ++ +Q I  +   S N      G +++  S+  F
Sbjct: 265 PEGSGSLPKKEDNKEYSLQQLITKVTKESDNVAHNILGYYVTNQSDGAF 313


>gi|307711225|ref|ZP_07647647.1| hypothetical protein SMSK321_1647 [Streptococcus mitis SK321]
 gi|307617187|gb|EFN96365.1| hypothetical protein SMSK321_1647 [Streptococcus mitis SK321]
          Length = 422

 Score = 39.9 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 9/124 (7%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           M SE + K  +S  V  +   +  G  QDE  Y AS+ K+  LY   E +      L+T 
Sbjct: 190 MLSEKYQKDYFSIYVKQLTTGKEAGINQDEKMYAASVLKLPYLYYTQEKINEGIYQLDTT 249

Query: 104 IPVSKTAATQNPSKLYLKEKT--------YFTTEQGILALITRSANDVSTAFGEFISG-S 154
           +           S       +         ++ +  I  +   S N      G +IS  S
Sbjct: 250 VKYVSAVNDFPGSYKPEGSGSLPKKEDNKEYSLKDLITKVSKESDNVAHNLLGYYISNQS 309

Query: 155 EKKF 158
           +  F
Sbjct: 310 DATF 313


>gi|208503063|gb|ACI29347.1| extended spectrum CTX-M-85 beta-lactamase [Salmonella enterica
           subsp. enterica serovar Albany]
          Length = 291

 Score = 39.9 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTPAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|117921807|ref|YP_870999.1| beta-lactamase [Shewanella sp. ANA-3]
 gi|117614139|gb|ABK49593.1| beta-lactamase [Shewanella sp. ANA-3]
          Length = 397

 Score = 39.9 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           ++++ K +  G  QD     ASL+K +T  ++ + L + KL LN  +
Sbjct: 85  LLELQKGE--GISQDSRFVMASLSKQITATLVLQALDAGKLDLNQTL 129


>gi|85704238|ref|ZP_01035341.1| beta lactamase [Roseovarius sp. 217]
 gi|85671558|gb|EAQ26416.1| beta lactamase [Roseovarius sp. 217]
          Length = 287

 Score = 39.9 bits (92), Expect = 0.64,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 30/97 (30%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119
           D         + +E    AS  K M    +   +    L L+  + +++    +      
Sbjct: 48  DSATGWTVTHRPNERFLMASTFKAMLCGAVLSRVDKGTLALDEPLEITEQDILEYAPITE 107

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
            +     +  +   A +  S N  +    + + G  +
Sbjct: 108 SEIGKTMSLGELCFAALDLSDNTAANLLIDRLGGPHE 144


>gi|227872354|ref|ZP_03990706.1| hypothetical protein HMPREF6123_0645 [Oribacterium sinus F0268]
 gi|227841803|gb|EEJ52081.1| hypothetical protein HMPREF6123_0645 [Oribacterium sinus F0268]
          Length = 124

 Score = 39.9 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 14/60 (23%)

Query: 43  SMASELHAKPKYSS----------IVIDVNKNQ----MTGFKQDEPRYPASLTKMMTLYI 88
           S A +L      S+          ++++ +  +    ++     +  YPAS+TK+MT  +
Sbjct: 62  SFAKDLAIPSDTSAQIQDMDAEYFLLVEEDGKEGDRAISFNHPYDRTYPASITKLMTALV 121


>gi|126202237|gb|ABN80430.1| extended spectrum beta-lactamase VEB-5 [Escherichia coli]
          Length = 299

 Score = 39.9 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 85/268 (31%), Gaps = 34/268 (12%)

Query: 22  IYIQRNIQLMGKILFLSI---------IMISMASELHAKPKYSSIVIDVNKNQ--MTGFK 70
           + I + I L+   LF ++         + + + + L AK     + I  N N+       
Sbjct: 1   MKIVKRILLVLLSLFFTVEYSNAQTDNLTLKIENVLKAKNARIGVAI-FNSNEKDTLKIN 59

Query: 71  QDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTY 125
            D      S+ K  +     +   +    L    +I ++         +P K      T 
Sbjct: 60  NDFHFPMQSVMKFPI--ALAVLSEIDKGNLSFEQKIEITPQDLLPKMWSPIKEEFPNGTT 117

Query: 126 FTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
            T EQ +   ++ S N       + I G  S +KF          I              
Sbjct: 118 LTIEQILNYTVSESDNIGCDILLKLIGGTDSVQKFLNANHFTDISIKANEEQMHKDWNTQ 177

Query: 184 DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH----NKLLNKMH--NI 237
            +N  T       +  LL   +    +  S + + +  +I+       N+L  ++    I
Sbjct: 178 YQNWATP----TAMNKLLIDTYNNKNQLLSKKSYDFIWKIMRETTTGSNRLKGQLPKNTI 233

Query: 238 DGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
              KTG    SG N   +    D  ++ 
Sbjct: 234 VAHKTGT---SGINNGIAAATNDVGVIT 258


>gi|89890798|ref|ZP_01202307.1| beta-lactamase [Flavobacteria bacterium BBFL7]
 gi|89516943|gb|EAS19601.1| beta-lactamase [Flavobacteria bacterium BBFL7]
          Length = 508

 Score = 39.5 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 27/101 (26%)

Query: 31  MGKILFLSIIMISMASELHAKPKYSSI---VID----------VNKNQMTGFK------- 70
           +  +LFL  +  S+A ++  K   + I   V D          V   ++   K       
Sbjct: 4   LFILLFLFAVTTSIAQDVDLKELDTYISKTVKDWGIPGVSVGIVKDGEIVFEKGYGVMEV 63

Query: 71  ------QDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQI 104
                  +   Y  AS TK  T  II + ++  KL+ + ++
Sbjct: 64  GKRKSPDEHTLYAIASNTKAFTAAIIAQLVEEGKLNWDDKV 104


>gi|322389150|ref|ZP_08062712.1| peptidase family S11 [Streptococcus parasanguinis ATCC 903]
 gi|321144160|gb|EFX39576.1| peptidase family S11 [Streptococcus parasanguinis ATCC 903]
          Length = 355

 Score = 39.5 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 25/85 (29%), Gaps = 11/85 (12%)

Query: 84  MTL---------YIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGI 132
           MT           ++ + +   KL+L  +  ++ T                   +     
Sbjct: 136 MTAGSTYKLPLNMLVVDEVAKGKLNLTDRFDITNTYYEYVGEHDNYVAAFDGAMSIPDMQ 195

Query: 133 LALITRSANDVSTAFGEFISGSEKK 157
              +  S N  + A  + + G E+ 
Sbjct: 196 RYSLVYSENTPAYALADRLGGMEQA 220


>gi|146260169|gb|ABQ14415.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 39.5 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI--PVSK 108
            +   I +D+N  ++   F+ +E     S  K++    +   + + +  L  +I  P + 
Sbjct: 32  ARVGYIELDLNSGKILKSFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYPQND 91

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
                  ++ +L +    T  +   A IT S N  +      I G ++   F   M +  
Sbjct: 92  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHV 149

Query: 167 KKI 169
            ++
Sbjct: 150 TRL 152


>gi|153000791|ref|YP_001366472.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Shewanella baltica OS185]
 gi|151365409|gb|ABS08409.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Shewanella baltica OS185]
          Length = 502

 Score = 39.5 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 21/79 (26%)

Query: 29 QLMGKILFLSIIMISMASELHA-----------------KPKYSSIV---IDVNKNQMTG 68
           L   +L  +   I+ A ++ A                  P++S I    +D++ NQ+  
Sbjct: 8  TLYASLLLAASHTIARADQIDAGAIETRTTSLSQAVGKISPRHSQIALLAMDMSNNQVIF 67

Query: 69 FKQDEPRY-PASLTKMMTL 86
           +Q E  + PAS  K++T 
Sbjct: 68 SQQAETLFIPASTQKLLTA 86


>gi|94502859|gb|ABF29660.1| beta-lactamase [Enterobacter cloacae]
          Length = 251

 Score = 39.5 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 58  VIDVNKN-QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           +ID   N Q+   + DE     S +K+M    + +  +++K  LN  + + K A   N +
Sbjct: 30  LIDTKDNTQVLY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYN 87

Query: 117 KLYLK-EKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            +  K      T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 88  PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFAREIGDETFRL 143


>gi|107123342|gb|ABF83599.1| extended-spectrum beta-lactamase PER-1 [Acinetobacter baumannii]
          Length = 269

 Score = 39.5 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 76/229 (33%), Gaps = 27/229 (11%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK--LYLKEKTYFT--T 128
           E     S+ K+    ++   +   KL LN  + V++    QN     +   +   F+   
Sbjct: 42  EKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFSVPV 101

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK---NASGLHDK 185
           +Q +   ++ S N       E + G        + +  + +G++ T            D+
Sbjct: 102 QQLLQYSVSHSDNVACDLLFELVGGP-----AALHDYIQSMGIKETAVVANEAQMHADDQ 156

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRK---FRYRNRIITNHNKLLNKMH------- 235
            Q             + K F Q  +     +   +++     T   +L   +        
Sbjct: 157 VQYQNWTSM-KGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAH 215

Query: 236 --NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ-ERDQKAL 281
                GIK G T  +  ++   L     P++  V    +++  R  +A+
Sbjct: 216 KTGTSGIKAGKT-AATNDLGIILLPDGRPLLVAVFVKDSAESSRTNEAI 263


>gi|312184031|gb|ADQ42778.1| beta-lactamase PER-1 [Acinetobacter baumannii]
          Length = 289

 Score = 39.5 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 76/229 (33%), Gaps = 27/229 (11%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK--LYLKEKTYFT--T 128
           E     S+ K+    ++   +   KL LN  + V++    QN     +   +   F+   
Sbjct: 58  EKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFSVPV 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK---NASGLHDK 185
           +Q +   ++ S N       E + G        + +  + +G++ T            D+
Sbjct: 118 QQLLQYSVSHSDNVACDLLFELVGGP-----AALHDYIQSMGIKETAVVANEAQMHADDQ 172

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRK---FRYRNRIITNHNKLLNKMH------- 235
            Q             + K F Q  +     +   +++     T   +L   +        
Sbjct: 173 VQYQNWTSM-KGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAH 231

Query: 236 --NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ-ERDQKAL 281
                GIK G T  +  ++   L     P++  V    +++  R  +A+
Sbjct: 232 KTGTSGIKAGKT-AATNDLGIILLPDGRPLLVAVFVKDSAESSRTNEAI 279


>gi|326315036|ref|YP_004232708.1| beta-lactamase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323371872|gb|ADX44141.1| beta-lactamase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 432

 Score = 39.5 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 7/92 (7%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNP 115
           D++          EP Y AS  K+     +   ++     L T + +   AA       P
Sbjct: 85  DLDTGASASLHGTEPWYLASSVKVPVAIAVLRGVERGDFTLETPLTL--RAADYVDGAGP 142

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           +       T  T    +  +I  S N  +   
Sbjct: 143 TNSR-PVGTPLTVRYLLEQMIIYSDNTATDML 173


>gi|227524722|ref|ZP_03954771.1| beta-lactamase class A [Lactobacillus hilgardii ATCC 8290]
 gi|227088206|gb|EEI23518.1| beta-lactamase class A [Lactobacillus hilgardii ATCC 8290]
          Length = 250

 Score = 39.5 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 65/177 (36%), Gaps = 19/177 (10%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKLHLNTQIPVSK 108
            P+   ++I VN  Q      ++    ASL K+    +  + +        L+ ++ V +
Sbjct: 16  APETIGLIIKVNHEQKLAVNANKAFRSASLIKL--AILNDVLDSH----FDLDKEVHVRR 69

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                    L L  +  F  +  +  +I+ S N  +    + I          ++    K
Sbjct: 70  DKLVGGAGVLQLLSERIFQLKDLLALMISVSDNSATNLVIDLIG------MDHVNQYLSK 123

Query: 169 IGMQNTIY----KNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
           +G   T       + + L + K+  TT  +   L  +   N P    +F  ++FRY+
Sbjct: 124 MGFYKTRLNRYLMDTNALENGKDNYTTPAESQRLLEMAIANHPMTKTWFLNQQFRYK 180


>gi|62511921|gb|AAX54687.2| PER-1 beta-lactamase [Pseudomonas aeruginosa]
          Length = 256

 Score = 39.5 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 76/229 (33%), Gaps = 27/229 (11%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK--LYLKEKTYFT--T 128
           E     S+ K+    ++   +   KL LN  + V++    QN     +   +   F+   
Sbjct: 21  EKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFSVPV 80

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK---NASGLHDK 185
           +Q +   ++ S N       E + G        + +  + +G++ T            D+
Sbjct: 81  QQLLQYSVSHSDNVACDLLFELVGGP-----AALHDYIQSMGIKETAVVANEAQMHADDQ 135

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRK---FRYRNRIITNHNKLLNKMH------- 235
            Q             + K F Q  +     +   +++     T   +L   +        
Sbjct: 136 VQYQNWTSM-KGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAH 194

Query: 236 --NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ-ERDQKAL 281
                GIK G T  +  ++   L     P++  V    +++  R  +A+
Sbjct: 195 KTGTSGIKAGKT-AATNDLGIILLPDGRPLLVAVFVKDSAESSRTNEAI 242


>gi|289618110|emb|CBI55326.1| unnamed protein product [Sordaria macrospora]
          Length = 437

 Score = 39.5 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           ASLTK++T   + + +Q  KL L+  +
Sbjct: 70  ASLTKLLTTICLMQLVQQGKLSLDQDV 96


>gi|114707811|ref|ZP_01440705.1| Peptidase S13, D-Ala-D-Ala carboxypeptidase C [Fulvimarina pelagi
          HTCC2506]
 gi|114536800|gb|EAU39930.1| Peptidase S13, D-Ala-D-Ala carboxypeptidase C [Fulvimarina pelagi
          HTCC2506]
          Length = 396

 Score = 39.5 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 45 ASELHAKPKYSSIVI-DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFE 91
          A  + A      +++ D +   +     DE   PAS+ K++T ++  E
Sbjct: 23 ADGIAAMAPSGLVLVLDEDGEDLVAQNTDEAFVPASVAKLVTAWLAME 70


>gi|89889590|ref|ZP_01201101.1| hypothetical protein BBFL7_01407 [Flavobacteria bacterium BBFL7]
 gi|89517863|gb|EAS20519.1| hypothetical protein BBFL7_01407 [Flavobacteria bacterium BBFL7]
          Length = 314

 Score = 39.5 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 58  VIDVNKNQMTGF--KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS 107
           ++D++ N +       D   Y AS+ K+  LY   + ++   L    ++   
Sbjct: 69  LVDLSDNGVRYASINGDNMMYAASMPKIAVLYTAMDAIEKGDLEYTDEVKTD 120


>gi|294813957|ref|ZP_06772600.1| alkaline D-peptidase [Streptomyces clavuligerus ATCC 27064]
 gi|326442367|ref|ZP_08217101.1| peptidase [Streptomyces clavuligerus ATCC 27064]
 gi|294326556|gb|EFG08199.1| alkaline D-peptidase [Streptomyces clavuligerus ATCC 27064]
          Length = 412

 Score = 39.5 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           ++ V D+   +  G    +     S+TK +T  ++       +L L+  + 
Sbjct: 91  AAGVADLRTGERRGHH--DRFRIGSVTKSLTAAVVLTLAAEGRLDLDDTVE 139


>gi|213133716|gb|ACJ43257.1| CTX-M-65 extended-spectrum beta-lactamase [Escherichia coli]
          Length = 277

 Score = 39.5 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M +  + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAVAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|254389951|ref|ZP_05005173.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
 gi|197703660|gb|EDY49472.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
          Length = 386

 Score = 39.5 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           ++ V D+   +  G    +     S+TK +T  ++       +L L+  + 
Sbjct: 65  AAGVADLRTGERRGHH--DRFRIGSVTKSLTAAVVLTLAAEGRLDLDDTVE 113


>gi|159037057|ref|YP_001536310.1| beta-lactamase [Salinispora arenicola CNS-205]
 gi|157915892|gb|ABV97319.1| beta-lactamase [Salinispora arenicola CNS-205]
          Length = 305

 Score = 39.5 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 2/96 (2%)

Query: 54  YSSIVI-DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
           + + ++ +++     G   D P   ASL K+     + E +   +L L T + ++    T
Sbjct: 20  HGAFLVRNLDTGDEIGLDADVPYPAASLVKVPLALAVLERVARGELDLATAVDIAPGPIT 79

Query: 113 QNPSKL-YLKEKTYFTTEQGILALITRSANDVSTAF 147
              + L   +       +  +   I  S    + A 
Sbjct: 80  TGTTGLSRFRHPARIALDDLLYLSIAISDGVAADAL 115


>gi|20805894|gb|AAM28884.1|AF506748_1 TEM beta-lactamase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|42525360|gb|AAS18375.1| beta lactamase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 286

 Score = 39.5 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 58/163 (35%), Gaps = 27/163 (16%)

Query: 27  NIQLMGKILFLSIIMISMA----------SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + ++     F +  +   A          +E     +   I +D+N  ++    + E R+
Sbjct: 5   HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERF 64

Query: 77  PASLTKMMT---LYII---FEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYFTT 128
           P     MM+   + +       + + +  L  +I  S+    +    ++ +L +    T 
Sbjct: 65  P-----MMSTFKVLLCGAELSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDG--MTV 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            +   A IT S N  +      I G ++   F   M +   ++
Sbjct: 118 RELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 160


>gi|325969990|ref|YP_004246181.1| beta-lactamase [Spirochaeta sp. Buddy]
 gi|324025228|gb|ADY11987.1| beta-lactamase [Spirochaeta sp. Buddy]
          Length = 362

 Score = 39.5 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 62/189 (32%), Gaps = 21/189 (11%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
                 SLTK  T  ++ + +Q  ++ L+    + +  A   PS       TY T EQ +
Sbjct: 87  HTYEIGSLTKTFTATLVAKAVQEGRISLDD--TIDQYIAL--PSN-----NTYPTIEQLL 137

Query: 133 LALITRSANDVSTAFGEFISGSEKKFA----ILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
                  +   +          +  F      ++ N+   + + +T Y  A    +    
Sbjct: 138 THTSGYKSLYFAWPMAANFFTRDNDFFGITKAMVRNRLASLSVPDTTY--AYEYSNFGYA 195

Query: 189 TTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNS 248
           T A    +L  +  + +       +       N  I++ N  L         K G    S
Sbjct: 196 TLA---LVLEEIYDQEYAALVTALACDDLHLPNTHISDKNGDLGDYWQW---KAGDAYLS 249

Query: 249 GFNIVTSLR 257
              +V+++ 
Sbjct: 250 AGGLVSTIE 258


>gi|237809427|ref|YP_002893867.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Tolumonas auensis DSM 9187]
 gi|237501688|gb|ACQ94281.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Tolumonas auensis DSM 9187]
          Length = 484

 Score = 39.5 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 35 LFLSIIMISMASELHAKPKYSSIVI---DVNKNQMTGFKQDEPRYPASLTKMMTLY 87
          +FLS++ +  A    + P+ S I +   +   + +  +  D    PAS  K++T  
Sbjct: 11 IFLSVLTVCSAQAAISVPEGSRIALAFKEPGSDSVAAYHGDTFMIPASTQKLLTAL 66


>gi|242800974|ref|XP_002483678.1| beta-lactamase family protein [Talaromyces stipitatus ATCC 10500]
 gi|218717023|gb|EED16444.1| beta-lactamase family protein [Talaromyces stipitatus ATCC 10500]
          Length = 435

 Score = 39.5 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           D   + AS TKM+T     + ++  KL+L+    V K A
Sbjct: 66  DTIFWIASCTKMLTAIACMQLVEQGKLNLDDVEQVEKLA 104


>gi|256961985|ref|ZP_05566156.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256952481|gb|EEU69113.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
          Length = 313

 Score = 39.5 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 9/122 (7%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKL 98
           ++++   E       S +  D+   +          Y AS  K+ +T+ +  + + S + 
Sbjct: 71  LLVASVKEFEGTVGISYL--DLETGEQRSVNGQHEFYTASTIKVPLTMLVA-DTVSSGQK 127

Query: 99  HLNTQIPVSKTAATQNPSKL---YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                IP +     +  + +    ++    +  +      IT S N       + + G  
Sbjct: 128 KWTDLIPYNAEEDYEEGTGIIAYNIQP--EYPLKTLQEYAITYSDNIAKNMLYDTLGGDA 185

Query: 156 KK 157
           K 
Sbjct: 186 KA 187


>gi|311746273|ref|ZP_07720058.1| hypothetical protein ALPR1_07660 [Algoriphagus sp. PR1]
 gi|126576506|gb|EAZ80784.1| hypothetical protein ALPR1_07660 [Algoriphagus sp. PR1]
          Length = 527

 Score = 39.5 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 17/108 (15%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVN---KNQM--------TGFKQDEPRYPASLTKMMT 85
           L ++M   A E H       IV+D +    N +           K       AS+TK  T
Sbjct: 63  LKLMMEEYAEENHIPGIAYGIVVDEDLILSNAVGLMDIENQLPAKTSTDFRIASMTKSFT 122

Query: 86  LYIIFEYLQSKKLHLNTQIP--VSKTA----ATQNPSKLYLKEKTYFT 127
              I +     KL LN  +   +   A     TQ+ S + ++     T
Sbjct: 123 AMAIMKLRDEGKLSLNDPVADYIPDMANVTYLTQDASTIDIENLLTMT 170


>gi|48525538|gb|AAT45018.1| beta-lactamase KLUY-4 [Kluyvera sp. N03-0462]
          Length = 291

 Score = 39.5 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 60/168 (35%), Gaps = 26/168 (15%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSI------------------VID-VNKN 64
           + + +Q M       I ++  ++ L+A+   S++                  +ID  +  
Sbjct: 2   VTKKVQRMMFAAAACIPLLLSSAPLYAQ--TSAVQQKLATLEKSSGGRLGVALIDTADNT 59

Query: 65  QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLYLKEK 123
           Q+   + DE     S +K+M    + +  +++K  LN  + +  T     NP        
Sbjct: 60  QVLY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIRPTDLVNYNPIAEKHVNG 118

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
           T  T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 119 T-MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|212635036|ref|YP_002311561.1| FtsI protein [Shewanella piezotolerans WP3]
 gi|212556520|gb|ACJ28974.1| FtsI [Shewanella piezotolerans WP3]
          Length = 578

 Score = 39.5 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 42/137 (30%), Gaps = 36/137 (26%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTG-----FKQDEPR-----------------YPASLTK 82
           A+E +     S +V+DVN  ++             R                  P S  K
Sbjct: 246 ATEANQATSASIVVLDVNTGEVLAMANTPSYNPNSRENLQSYRMRNRALTDAYEPGSTIK 305

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK---EKTYFTTEQGIL-ALITR 138
               +++   L++  + L+  I         NP ++ +     +         L  ++  
Sbjct: 306 ---PFVVAAALEAGTIKLDDIIK-------TNPGRMRIGGKIVRDTRNYGDLSLAGILVH 355

Query: 139 SANDVSTAFGEFISGSE 155
           S+N   T     +   E
Sbjct: 356 SSNVGMTKIALSMPVQE 372


>gi|107123318|gb|ABF83598.1| extended-spectrum beta-lactamase PER-1 [Acinetobacter baumannii]
          Length = 266

 Score = 39.5 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 76/229 (33%), Gaps = 27/229 (11%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK--LYLKEKTYFT--T 128
           E     S+ K+    ++   +   KL LN  + V++    QN     +   +   F+   
Sbjct: 42  EKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFSVPV 101

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK---NASGLHDK 185
           +Q +   ++ S N       E + G        + +  + +G++ T            D+
Sbjct: 102 QQLLQYSVSHSDNVACDLLFELVGGP-----AALHDYIQSMGIKETAVVANEAQMHADDQ 156

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRK---FRYRNRIITNHNKLLNKMH------- 235
            Q             + K F Q  +     +   +++     T   +L   +        
Sbjct: 157 VQYQNWTSM-KGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAH 215

Query: 236 --NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ-ERDQKAL 281
                GIK G T  +  ++   L     P++  V    +++  R  +A+
Sbjct: 216 KTGTSGIKAGKT-AATNDLGIILLPDGRPLLVAVFVKDSAESSRTNEAI 263


>gi|260654677|ref|ZP_05860167.1| beta-lactamase [Jonquetella anthropi E3_33 E1]
 gi|260630693|gb|EEX48887.1| beta-lactamase [Jonquetella anthropi E3_33 E1]
          Length = 273

 Score = 39.5 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 54/156 (34%), Gaps = 15/156 (9%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKLHLNTQIPVSKTA 110
           + S ++ D    +    +  +    ASL K+    +  +F   +   L+L+  I V    
Sbjct: 19  QASVVLADPATGEQFDLRGLQRLKSASLIKL--PILWDLFARAEEGSLNLSETIVVPSEK 76

Query: 111 ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
                             E   +   T S N  +    + +          ++++ + +G
Sbjct: 77  RVDGGLLHKFSASPTLRLEDLAVLAGTVSDNTAANLLMDRLG------LDGINDRIRSLG 130

Query: 171 MQNTIYK-----NASGLHDKNQITTARDQAILGILL 201
           M++T  +     + +    K+  TTA D A+    L
Sbjct: 131 MKSTSLERRMLDSGAAKAGKDNWTTACDVALFLSAL 166


>gi|107123297|gb|ABF83597.1| extended-spectrum beta-lactamase PER-1 [Acinetobacter baumannii]
          Length = 287

 Score = 39.5 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 76/229 (33%), Gaps = 27/229 (11%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK--LYLKEKTYFT--T 128
           E     S+ K+    ++   +   KL LN  + V++    QN     +   +   F+   
Sbjct: 59  EKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFSVPV 118

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK---NASGLHDK 185
           +Q +   ++ S N       E + G        + +  + +G++ T            D+
Sbjct: 119 QQLLQYSVSHSDNVACDLLFELVGGP-----AALHDYIQSMGIKETAVVANEAQMHADDQ 173

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRK---FRYRNRIITNHNKLLNKMH------- 235
            Q             + K F Q  +     +   +++     T   +L   +        
Sbjct: 174 VQYQNWTSM-KGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAH 232

Query: 236 --NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ-ERDQKAL 281
                GIK G T  +  ++   L     P++  V    +++  R  +A+
Sbjct: 233 KTGTSGIKAGKT-AATNDLGIILLPDGRPLLVAVFVKDSAESSRTNEAI 280


>gi|323709075|gb|ADY02554.1| beta-lactamase CTX-M-105 [Escherichia coli]
          Length = 291

 Score = 39.5 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M +  + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAVAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|163735223|ref|ZP_02142658.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Roseobacter litoralis Och 149]
 gi|161391437|gb|EDQ15771.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Roseobacter litoralis Och 149]
          Length = 499

 Score = 39.5 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 58  VIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYL 93
           V D    ++   +  E    PAS+TK +T     + L
Sbjct: 66  VADAKTGEILEARTPELGIAPASVTKAITALYALDTL 102


>gi|296876835|ref|ZP_06900883.1| peptidase family S11 [Streptococcus parasanguinis ATCC 15912]
 gi|296432337|gb|EFH18136.1| peptidase family S11 [Streptococcus parasanguinis ATCC 15912]
          Length = 352

 Score = 39.5 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 25/85 (29%), Gaps = 11/85 (12%)

Query: 84  MTL---------YIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGI 132
           MT           ++ + +   KL+L  +  ++ T                   +     
Sbjct: 133 MTAGSTYKLPLNMLVVDEVAKGKLNLTDRFDITNTYYEYVGEHDNYVAAFDGAMSIPDMQ 192

Query: 133 LALITRSANDVSTAFGEFISGSEKK 157
              +  S N  + A  + + G E+ 
Sbjct: 193 RYSLVYSENTPAYALADRLGGMEQA 217


>gi|261872208|gb|ACY02886.1| CTX-M-90 extended-spectrum beta-lactamase [Proteus mirabilis]
          Length = 278

 Score = 39.5 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M +  + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAVAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|148824799|ref|YP_001289553.1| lipoprotein lpqF [Mycobacterium tuberculosis F11]
 gi|253800634|ref|YP_003033635.1| lipoprotein lpqF [Mycobacterium tuberculosis KZN 1435]
 gi|254366154|ref|ZP_04982198.1| lipoprotein lpqF [Mycobacterium tuberculosis str. Haarlem]
 gi|289441023|ref|ZP_06430767.1| lipoprotein lpqF [Mycobacterium tuberculosis T46]
 gi|289445187|ref|ZP_06434931.1| lipoprotein lpqF [Mycobacterium tuberculosis CPHL_A]
 gi|289555856|ref|ZP_06445066.1| lipoprotein lpqF [Mycobacterium tuberculosis KZN 605]
 gi|289571835|ref|ZP_06452062.1| lipoprotein lpqF [Mycobacterium tuberculosis T17]
 gi|289747430|ref|ZP_06506808.1| lipoprotein lpqF [Mycobacterium tuberculosis 02_1987]
 gi|289752308|ref|ZP_06511686.1| lipoprotein lpqF [Mycobacterium tuberculosis T92]
 gi|289755723|ref|ZP_06515101.1| lipoprotein lpqF [Mycobacterium tuberculosis EAS054]
 gi|289759750|ref|ZP_06519128.1| lipoprotein lpqF [Mycobacterium tuberculosis T85]
 gi|289763772|ref|ZP_06523150.1| lipoprotein lpqF [Mycobacterium tuberculosis GM 1503]
 gi|298527073|ref|ZP_07014482.1| lipoprotein lpqF [Mycobacterium tuberculosis 94_M4241A]
 gi|308372590|ref|ZP_07429188.2| lipoprotein lpqF [Mycobacterium tuberculosis SUMu004]
 gi|134151666|gb|EBA43711.1| lipoprotein lpqF [Mycobacterium tuberculosis str. Haarlem]
 gi|148723326|gb|ABR07951.1| lipoprotein lpqF [Mycobacterium tuberculosis F11]
 gi|253322137|gb|ACT26740.1| lipoprotein lpqF [Mycobacterium tuberculosis KZN 1435]
 gi|289413942|gb|EFD11182.1| lipoprotein lpqF [Mycobacterium tuberculosis T46]
 gi|289418145|gb|EFD15346.1| lipoprotein lpqF [Mycobacterium tuberculosis CPHL_A]
 gi|289440488|gb|EFD22981.1| lipoprotein lpqF [Mycobacterium tuberculosis KZN 605]
 gi|289545589|gb|EFD49237.1| lipoprotein lpqF [Mycobacterium tuberculosis T17]
 gi|289687958|gb|EFD55446.1| lipoprotein lpqF [Mycobacterium tuberculosis 02_1987]
 gi|289692895|gb|EFD60324.1| lipoprotein lpqF [Mycobacterium tuberculosis T92]
 gi|289696310|gb|EFD63739.1| lipoprotein lpqF [Mycobacterium tuberculosis EAS054]
 gi|289711278|gb|EFD75294.1| lipoprotein lpqF [Mycobacterium tuberculosis GM 1503]
 gi|289715314|gb|EFD79326.1| lipoprotein lpqF [Mycobacterium tuberculosis T85]
 gi|298496867|gb|EFI32161.1| lipoprotein lpqF [Mycobacterium tuberculosis 94_M4241A]
 gi|308332747|gb|EFP21598.1| lipoprotein lpqF [Mycobacterium tuberculosis SUMu004]
 gi|326905432|gb|EGE52365.1| lipoprotein lpqF [Mycobacterium tuberculosis W-148]
 gi|328460365|gb|AEB05788.1| lipoprotein lpqF [Mycobacterium tuberculosis KZN 4207]
          Length = 452

 Score = 39.5 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 9/102 (8%)

Query: 52  PKYSSIVIDVNKNQ---MTGFKQDEPRYPASLTKMMTLYIIFE---YLQSKKLHLNTQIP 105
            +YS  V  V+  +   + G    E    AS+ K+   Y++      +Q   +  +  + 
Sbjct: 165 ARYSFQVAKVDNGRCDPVAGTNTGESLPLASIFKL---YVLHALAGAVQHNTVSWDDLLT 221

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           V+  +     S L L      +       +I  S N  +   
Sbjct: 222 VTAKSKAVGSSGLELPVGARVSVRTAAEKMIATSDNMATDLL 263


>gi|28871549|ref|NP_794168.1| penicillin-binding protein [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213966573|ref|ZP_03394724.1| penicillin-binding protein [Pseudomonas syringae pv. tomato T1]
 gi|301384712|ref|ZP_07233130.1| penicillin-binding protein [Pseudomonas syringae pv. tomato Max13]
 gi|302059800|ref|ZP_07251341.1| penicillin-binding protein [Pseudomonas syringae pv. tomato K40]
 gi|302131747|ref|ZP_07257737.1| penicillin-binding protein [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|28854800|gb|AAO57863.1| penicillin-binding protein [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213928423|gb|EEB61967.1| penicillin-binding protein [Pseudomonas syringae pv. tomato T1]
 gi|331016728|gb|EGH96784.1| penicillin-binding protein [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 575

 Score = 39.5 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 34/125 (27%), Gaps = 30/125 (24%)

Query: 53  KYSSIVIDVNKNQMTG------FKQDEPR----------------YPASLTK-M-MTLYI 88
             S +++DV   ++        +  +  R                 P S  K + MT   
Sbjct: 243 AGSMVIMDVKTGEVLAMVNQPTYNPNNRRTMVPAAMRNRAIIDVFEPGSTMKPISMTA-- 300

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
               L S +     ++ V           +    KT          ++  S+N   +   
Sbjct: 301 ---ALDSGRWKPTDKVEVYPGTLQIGKYTIRDVTKTEGPVLDL-TGILINSSNVGMSKVA 356

Query: 149 EFISG 153
             + G
Sbjct: 357 FDVGG 361


>gi|15843206|ref|NP_338243.1| hypothetical protein MT3699 [Mycobacterium tuberculosis CDC1551]
 gi|215405642|ref|ZP_03417823.1| hypothetical protein Mtub0_18516 [Mycobacterium tuberculosis
           02_1987]
 gi|215413515|ref|ZP_03422189.1| hypothetical protein Mtub9_19158 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215429094|ref|ZP_03427013.1| hypothetical protein MtubT9_23008 [Mycobacterium tuberculosis T92]
 gi|215432568|ref|ZP_03430487.1| hypothetical protein MtubE_18354 [Mycobacterium tuberculosis
           EAS054]
 gi|215447927|ref|ZP_03434679.1| hypothetical protein MtubT_19000 [Mycobacterium tuberculosis T85]
 gi|218755377|ref|ZP_03534173.1| hypothetical protein MtubG1_18999 [Mycobacterium tuberculosis GM
           1503]
 gi|219559671|ref|ZP_03538747.1| hypothetical protein MtubT1_21087 [Mycobacterium tuberculosis T17]
 gi|254552703|ref|ZP_05143150.1| hypothetical protein Mtube_20025 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260184513|ref|ZP_05761987.1| hypothetical protein MtubCP_00445 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260198635|ref|ZP_05766126.1| hypothetical protein MtubT4_00440 [Mycobacterium tuberculosis T46]
 gi|294993713|ref|ZP_06799404.1| hypothetical protein Mtub2_04171 [Mycobacterium tuberculosis 210]
 gi|297636269|ref|ZP_06954049.1| hypothetical protein MtubK4_19185 [Mycobacterium tuberculosis KZN
           4207]
 gi|297733262|ref|ZP_06962380.1| hypothetical protein MtubKR_19320 [Mycobacterium tuberculosis KZN
           R506]
 gi|306777949|ref|ZP_07416286.1| lipoprotein lpqF [Mycobacterium tuberculosis SUMu001]
 gi|306778478|ref|ZP_07416815.1| lipoprotein lpqF [Mycobacterium tuberculosis SUMu002]
 gi|306786501|ref|ZP_07424823.1| lipoprotein lpqF [Mycobacterium tuberculosis SUMu003]
 gi|306791189|ref|ZP_07429491.1| lipoprotein lpqF [Mycobacterium tuberculosis SUMu005]
 gi|306795974|ref|ZP_07434276.1| lipoprotein lpqF [Mycobacterium tuberculosis SUMu006]
 gi|306801221|ref|ZP_07437889.1| lipoprotein lpqF [Mycobacterium tuberculosis SUMu008]
 gi|306805434|ref|ZP_07442102.1| lipoprotein lpqF [Mycobacterium tuberculosis SUMu007]
 gi|306969726|ref|ZP_07482387.1| lipoprotein lpqF [Mycobacterium tuberculosis SUMu009]
 gi|306974066|ref|ZP_07486727.1| lipoprotein lpqF [Mycobacterium tuberculosis SUMu010]
 gi|307081774|ref|ZP_07490944.1| lipoprotein lpqF [Mycobacterium tuberculosis SUMu011]
 gi|313660593|ref|ZP_07817473.1| hypothetical protein MtubKV_19315 [Mycobacterium tuberculosis KZN
           V2475]
 gi|13883560|gb|AAK48057.1| hypothetical protein MT3699 [Mycobacterium tuberculosis CDC1551]
 gi|308213740|gb|EFO73139.1| lipoprotein lpqF [Mycobacterium tuberculosis SUMu001]
 gi|308328494|gb|EFP17345.1| lipoprotein lpqF [Mycobacterium tuberculosis SUMu002]
 gi|308328908|gb|EFP17759.1| lipoprotein lpqF [Mycobacterium tuberculosis SUMu003]
 gi|308340240|gb|EFP29091.1| lipoprotein lpqF [Mycobacterium tuberculosis SUMu005]
 gi|308343561|gb|EFP32412.1| lipoprotein lpqF [Mycobacterium tuberculosis SUMu006]
 gi|308348029|gb|EFP36880.1| lipoprotein lpqF [Mycobacterium tuberculosis SUMu007]
 gi|308351970|gb|EFP40821.1| lipoprotein lpqF [Mycobacterium tuberculosis SUMu008]
 gi|308352756|gb|EFP41607.1| lipoprotein lpqF [Mycobacterium tuberculosis SUMu009]
 gi|308356605|gb|EFP45456.1| lipoprotein lpqF [Mycobacterium tuberculosis SUMu010]
 gi|308360562|gb|EFP49413.1| lipoprotein lpqF [Mycobacterium tuberculosis SUMu011]
 gi|323717723|gb|EGB26922.1| lipoprotein lpqF [Mycobacterium tuberculosis CDC1551A]
          Length = 438

 Score = 39.5 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 9/102 (8%)

Query: 52  PKYSSIVIDVNKNQ---MTGFKQDEPRYPASLTKMMTLYIIFE---YLQSKKLHLNTQIP 105
            +YS  V  V+  +   + G    E    AS+ K+   Y++      +Q   +  +  + 
Sbjct: 151 ARYSFQVAKVDNGRCDPVAGTNTGESLPLASIFKL---YVLHALAGAVQHNTVSWDDLLT 207

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           V+  +     S L L      +       +I  S N  +   
Sbjct: 208 VTAKSKAVGSSGLELPVGARVSVRTAAEKMIATSDNMATDLL 249


>gi|15610729|ref|NP_218110.1| lipoprotein LpqF [Mycobacterium tuberculosis H37Rv]
 gi|148663457|ref|YP_001284980.1| putative lipoprotein LpqF [Mycobacterium tuberculosis H37Ra]
 gi|3261777|emb|CAB08910.1| PROBABLE CONSERVED LIPOPROTEIN LPQF [Mycobacterium tuberculosis
           H37Rv]
 gi|148507609|gb|ABQ75418.1| putative conserved lipoprotein LpqF [Mycobacterium tuberculosis
           H37Ra]
          Length = 452

 Score = 39.5 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 9/102 (8%)

Query: 52  PKYSSIVIDVNKNQ---MTGFKQDEPRYPASLTKMMTLYIIFE---YLQSKKLHLNTQIP 105
            +YS  V  V+  +   + G    E    AS+ K+   Y++      +Q   +  +  + 
Sbjct: 165 ARYSFQVAKVDNGRCDPVAGTNTGESLPLASIFKL---YVLHALAGAVQHNTVSWDDLLT 221

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           V+  +     S L L      +       +I  S N  +   
Sbjct: 222 VTAKSKAVGSSGLELPVGARVSVRTAAEKMIATSDNMATDLL 263


>gi|289572247|ref|ZP_06452474.1| lipoprotein lpqF [Mycobacterium tuberculosis K85]
 gi|289536678|gb|EFD41256.1| lipoprotein lpqF [Mycobacterium tuberculosis K85]
          Length = 452

 Score = 39.5 bits (91), Expect = 0.76,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 9/102 (8%)

Query: 52  PKYSSIVIDVNKNQ---MTGFKQDEPRYPASLTKMMTLYIIFE---YLQSKKLHLNTQIP 105
            +YS  V  V+  +   + G    E    AS+ K+   Y++      +Q   +  +  + 
Sbjct: 165 ARYSFQVAKVDNGRCDPVAGTNTGESLPLASIFKL---YVLHALAGAVQHNTVSWDDLLT 221

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           V+  +     S L L      +       +I  S N  +   
Sbjct: 222 VTAKSKAVGSSGLELPVGARVSVRTAAEKMIATSDNMATDLL 263


>gi|167968195|ref|ZP_02550472.1| putative conserved lipoprotein LpqF [Mycobacterium tuberculosis
           H37Ra]
 gi|307086390|ref|ZP_07495503.1| lipoprotein lpqF [Mycobacterium tuberculosis SUMu012]
 gi|308364177|gb|EFP53028.1| lipoprotein lpqF [Mycobacterium tuberculosis SUMu012]
          Length = 438

 Score = 39.5 bits (91), Expect = 0.76,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 9/102 (8%)

Query: 52  PKYSSIVIDVNKNQ---MTGFKQDEPRYPASLTKMMTLYIIFE---YLQSKKLHLNTQIP 105
            +YS  V  V+  +   + G    E    AS+ K+   Y++      +Q   +  +  + 
Sbjct: 151 ARYSFQVAKVDNGRCDPVAGTNTGESLPLASIFKL---YVLHALAGAVQHNTVSWDDLLT 207

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           V+  +     S L L      +       +I  S N  +   
Sbjct: 208 VTAKSKAVGSSGLELPVGARVSVRTAAEKMIATSDNMATDLL 249


>gi|330877139|gb|EGH11288.1| penicillin-binding protein [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 575

 Score = 39.5 bits (91), Expect = 0.77,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 34/125 (27%), Gaps = 30/125 (24%)

Query: 53  KYSSIVIDVNKNQMTG------FKQDEPR----------------YPASLTK-M-MTLYI 88
             S +++DV   ++        +  +  R                 P S  K + MT   
Sbjct: 243 AGSMVIMDVKTGEVLAMVNQPTYNPNNRRTMVPAAMRNRAIIDVFEPGSTMKPISMTA-- 300

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
               L S +     ++ V           +    KT          ++  S+N   +   
Sbjct: 301 ---ALDSGRWKPTDKVEVYPGTLQIGKYTIRDVTKTEGPVLDL-TGILINSSNVGMSKVA 356

Query: 149 EFISG 153
             + G
Sbjct: 357 FDVGG 361


>gi|331694434|ref|YP_004330673.1| beta-lactamase [Pseudonocardia dioxanivorans CB1190]
 gi|326949123|gb|AEA22820.1| beta-lactamase [Pseudonocardia dioxanivorans CB1190]
          Length = 274

 Score = 39.5 bits (91), Expect = 0.77,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 16/132 (12%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQI-----PVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           AS+TK++T Y     ++   +  +         V   AA  +              +   
Sbjct: 44  ASVTKLLTAYATLVAVEEGAVEWDQPAGPEGSTVRHLAAHASG-----LAFDSDAVQAAP 98

Query: 133 LALITRSANDVSTAFGEFI-SGSEKKFAILMSNK-AKKIGMQNTIYKNASGLHDKNQITT 190
            A    S    +    E I + S   FA  +       +G+  T      G      ++T
Sbjct: 99  GARRIYSNTGFAV-LAETITAASGIPFADYLHEAVCVPLGLGGTRL---EGHPGSGAVST 154

Query: 191 ARDQAILGILLR 202
             D A     L+
Sbjct: 155 VDDLARFAAELQ 166


>gi|306826196|ref|ZP_07459531.1| beta-lactamase [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304431672|gb|EFM34653.1| beta-lactamase [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 422

 Score = 39.5 bits (91), Expect = 0.77,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 13/109 (11%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           +   +  G  +D   Y AS+ K+   Y+    + +   +  L++         +   S  
Sbjct: 207 LTTGKEAGVNEDSKLYAASILKL--AYLYYAQDKINQGEYTLDSSFKYIPEVNSFPGSYK 264

Query: 119 YLKEKT--------YFTTEQGILALITRSANDVSTAFGEFISG-SEKKF 158
                +         ++ +Q I  +   S N      G +++  S+  F
Sbjct: 265 PEGSGSLPKKEDNKEYSLQQLITKVTKESDNVAHNILGYYVTNQSDGAF 313


>gi|146260227|gb|ABQ14439.1| beta-lactamase [uncultured soil bacterium]
 gi|146260237|gb|ABQ14443.1| beta-lactamase [uncultured soil bacterium]
          Length = 272

 Score = 39.5 bits (91), Expect = 0.77,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 19/129 (14%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHL--------NT 102
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L        N 
Sbjct: 32  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRTHYSQND 91

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAI 160
            +  S            L +    T  +   A IT S N  +      I G ++   F  
Sbjct: 92  LVEYSPVTEKH------LTDG--MTVRELCSAAITMSDNTAADLLLATIGGPKELTAFLH 143

Query: 161 LMSNKAKKI 169
            M +   ++
Sbjct: 144 NMGDHVTRL 152


>gi|260202783|ref|ZP_05770274.1| hypothetical protein MtubK8_00500 [Mycobacterium tuberculosis K85]
          Length = 438

 Score = 39.5 bits (91), Expect = 0.77,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 9/102 (8%)

Query: 52  PKYSSIVIDVNKNQ---MTGFKQDEPRYPASLTKMMTLYIIFE---YLQSKKLHLNTQIP 105
            +YS  V  V+  +   + G    E    AS+ K+   Y++      +Q   +  +  + 
Sbjct: 151 ARYSFQVAKVDNGRCDPVAGTNTGESLPLASIFKL---YVLHALAGAVQHNTVSWDDLLT 207

Query: 106 VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
           V+  +     S L L      +       +I  S N  +   
Sbjct: 208 VTAKSKAVGSSGLELPVGARVSVRTAAEKMIATSDNMATDLL 249


>gi|90419093|ref|ZP_01227004.1| putative beta-lactamase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337173|gb|EAS50878.1| putative beta-lactamase [Aurantimonas manganoxydans SI85-9A1]
          Length = 299

 Score = 39.5 bits (91), Expect = 0.77,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 2/105 (1%)

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYF 126
            G ++DE    AS  K +    + E  +   L L+  + +              ++ +  
Sbjct: 66  WGHREDERFLMASTFKSVLCGAVLEQAEQGALALDEPVKIRAEDILSYAPVTETRQGSTM 125

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           T  +  LA    S N  +    + + G +    F   + +   ++
Sbjct: 126 TIGELCLATADMSDNTAANLLLDRLGGPQAVTAFLRGIGDAVTRL 170


>gi|291566052|dbj|BAI88324.1| probable D-alanyl-D-alanine carboxypeptidase [Arthrospira
          platensis NIES-39]
          Length = 474

 Score = 39.5 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 9/57 (15%)

Query: 38 SIIMISMASELHA---KPKYS----SIVID-VNKNQMTGFKQDEPRY-PASLTKMMT 85
          SI    + +E++A    PK+S     I+I+ ++  Q+      E  + PAS  K++T
Sbjct: 26 SICPAVLEAEINAIALDPKFSRSRWGILIESLDSGQVLYSLDSERFFLPASTIKLLT 82


>gi|38141536|emb|CAE53428.1| D-stereospecific endopeptidase [Bacillus cereus]
          Length = 389

 Score = 39.5 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           Y++ V D+N  +    K D     AS+TK  T  ++ +     +L+L+  I 
Sbjct: 81  YAAGVADLNTKK--PMKTDFRFRIASVTKTFTATVVLQLAAENRLNLDDSIE 130


>gi|283778706|ref|YP_003369461.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-
          endopeptidase [Pirellula staleyi DSM 6068]
 gi|283437159|gb|ADB15601.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-
          endopeptidase [Pirellula staleyi DSM 6068]
          Length = 524

 Score = 39.5 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 37 LSIIMISMASE-LHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
          L++ + ++A + L+A+  +  + +D+   ++   +     + PAS+TK+ +     +YL
Sbjct: 33 LAMAVQALADQPLYAQAHWGILAVDLESGEVVLERDSGKLFAPASVTKLFSCASALDYL 91


>gi|257065336|ref|YP_003145008.1| hypothetical protein Shel_26600 [Slackia heliotrinireducens DSM
           20476]
 gi|256792989|gb|ACV23659.1| hypothetical protein Shel_26600 [Slackia heliotrinireducens DSM
           20476]
          Length = 380

 Score = 39.5 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 81/274 (29%), Gaps = 54/274 (19%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTL----YIIF---EYL 93
           +      + +K      ++DV       +  DEP Y AS           Y +F   E +
Sbjct: 130 LTKAMQAIQSKGDLGFFMMDVESGAGIAYNLDEPFYGAS------SFKGPYAVFLCQELI 183

Query: 94  QSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           ++ K+ L+ +  +      +  S  +       T +  I A +  S N+   +       
Sbjct: 184 ETGKVKLDDECKICTR-VDKLGSYPF---GGSDTVQNLIYAAVVESDNNAYVSL------ 233

Query: 154 SEKKFAIL-MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL---------RK 203
               F  L     A  +G+++  +            ++A+                   +
Sbjct: 234 -RDTFDTLGYDEWATGLGVKDCPWTQGFHYPTYCTRSSAKLWLNTYRYFETGSDTSVWLE 292

Query: 204 NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYT---RNSGFNIVTSL---R 257
              Q  +   IR+              L     +   K G+        +N++       
Sbjct: 293 AVMQIAEDSFIREA-------------LKGTDAVVADKGGWIASDDEPEYNVLVDAGLIE 339

Query: 258 YKDDPIVAVVM-GMPTSQERDQKALELITSFLEK 290
           Y+    +  VM G+P  +E      +L  +    
Sbjct: 340 YEGRTYIMCVMAGLPDCEEHRALCSDLAAALFAT 373


>gi|114048756|ref|YP_739306.1| beta-lactamase [Shewanella sp. MR-7]
 gi|113890198|gb|ABI44249.1| beta-lactamase [Shewanella sp. MR-7]
          Length = 397

 Score = 39.5 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           ++++ K +  G  Q+     ASL+K +T  ++ + L + KL LN  +
Sbjct: 85  LLELQKGK--GINQESRFVMASLSKQITATLVLQALDAGKLDLNQTL 129


>gi|317478452|ref|ZP_07937612.1| penicillin binding transpeptidase domain-containing protein
           [Bacteroides sp. 4_1_36]
 gi|316905341|gb|EFV27135.1| penicillin binding transpeptidase domain-containing protein
           [Bacteroides sp. 4_1_36]
          Length = 712

 Score = 39.5 bits (91), Expect = 0.80,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 36/126 (28%), Gaps = 26/126 (20%)

Query: 56  SIVIDVNKNQM-------------TGFKQDEP----RYPASLTKMMTLYIIFEYLQSKKL 98
           +++++V   ++                           P S  K  ++ +  E     K+
Sbjct: 270 AVLMEVATGEVKAIVNMMKAGDGNYYEMNSNAISDMLEPGSTFKTASIMVALE---DGKI 326

Query: 99  HLNTQIPVSKTAATQNPSKL----YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
             +T++           SK+    + +    +        L   S   VS    +    +
Sbjct: 327 TPDTEVDTGNGIMNMYGSKMRDHNWHRGG--YGKIDVTRILEVSSNVGVSYLIDKHYKDN 384

Query: 155 EKKFAI 160
            +KF  
Sbjct: 385 PQKFVD 390


>gi|160891415|ref|ZP_02072418.1| hypothetical protein BACUNI_03865 [Bacteroides uniformis ATCC 8492]
 gi|270295454|ref|ZP_06201655.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|156858822|gb|EDO52253.1| hypothetical protein BACUNI_03865 [Bacteroides uniformis ATCC 8492]
 gi|270274701|gb|EFA20562.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 712

 Score = 39.5 bits (91), Expect = 0.80,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 36/126 (28%), Gaps = 26/126 (20%)

Query: 56  SIVIDVNKNQM-------------TGFKQDEP----RYPASLTKMMTLYIIFEYLQSKKL 98
           +++++V   ++                           P S  K  ++ +  E     K+
Sbjct: 270 AVLMEVATGEVKAIVNMMKAGDGNYYEMNSNAISDMLEPGSTFKTASIMVALE---DGKI 326

Query: 99  HLNTQIPVSKTAATQNPSKL----YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
             +T++           SK+    + +    +        L   S   VS    +    +
Sbjct: 327 TPDTEVDTGNGIMNMYGSKMRDHNWHRGG--YGKIDVTRILEVSSNVGVSYLIDKHYKDN 384

Query: 155 EKKFAI 160
            +KF  
Sbjct: 385 PQKFVD 390


>gi|298206568|ref|YP_003717508.1| beta-lactamase CTX-M-65 [Escherichia coli]
 gi|125664055|gb|ABN51008.1| beta-lactamase CTX-M-65 [Citrobacter freundii]
 gi|126013668|gb|ABN69105.1| extended-spectrum beta-lactamase CTX-M-65 [Escherichia coli]
 gi|159032446|gb|ABW87621.1| extended-spectrum beta-lactamase CTX-M-65 [Escherichia coli]
 gi|171188400|gb|ACB41778.1| CTX-M-type extended spectrum beta-lactamase [Escherichia coli]
 gi|213133670|gb|ACJ43234.1| CTX-M-65 extended-spectrum beta-lactamase [Escherichia coli]
 gi|213133672|gb|ACJ43235.1| CTX-M-65 extended-spectrum beta-lactamase [Escherichia coli]
 gi|213133712|gb|ACJ43255.1| CTX-M-65 extended-spectrum beta-lactamase [Escherichia coli]
 gi|214011881|gb|ACJ61679.1| CTX extended-spectrum beta-lactamase [Escherichia coli]
 gi|214011883|gb|ACJ61680.1| CTX extended-spectrum beta-lactamase [Escherichia coli]
 gi|225906385|gb|ACO36037.1| CTX-M-65 extended-spectrum beta-lactamase [Escherichia coli]
 gi|225906387|gb|ACO36038.1| CTX-M-65 extended-spectrum beta-lactamase [Escherichia coli]
 gi|225906389|gb|ACO36039.1| CTX-M-65 extended-spectrum beta-lactamase [Escherichia coli]
 gi|225906391|gb|ACO36040.1| CTX-M-65 extended-spectrum beta-lactamase [Escherichia coli]
 gi|225906393|gb|ACO36041.1| CTX-M-65 extended-spectrum beta-lactamase [Escherichia coli]
 gi|225906395|gb|ACO36042.1| CTX-M-65 extended-spectrum beta-lactamase [Escherichia coli]
 gi|225906397|gb|ACO36043.1| CTX-M-65 extended-spectrum beta-lactamase [Escherichia coli]
 gi|237511597|gb|ACQ99520.1| CTX-M-65 extended-spectrum beta-lactamase [Salmonella sp. YLA4]
 gi|256576430|gb|ACU87989.1| extended-spectrum beta-lactamase CTX-M-65 [Escherichia coli]
 gi|256956403|gb|ACV32744.1| beta-lactamase [Escherichia coli]
 gi|282192944|gb|ADA81875.1| extended-spectrum beta-lactamase [Escherichia coli]
 gi|296537973|gb|ADH29993.1| beta-lactamase CTX-M-65 [Escherichia coli O25b:H4 str. EC958]
 gi|296538024|gb|ADH30043.1| beta-lactamase CTX-M-24 [Escherichia coli O25b:H4 str. EC958]
 gi|321496187|gb|ADW93965.1| CTX-M-65 [Escherichia coli]
          Length = 291

 Score = 39.5 bits (91), Expect = 0.80,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M +  + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAVAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|109898854|ref|YP_662109.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudoalteromonas
           atlantica T6c]
 gi|109701135|gb|ABG41055.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudoalteromonas
           atlantica T6c]
          Length = 445

 Score = 39.5 bits (91), Expect = 0.80,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 59  IDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +D+   Q+    ++      S+TK+ T  +IF+ +   KL L+T++
Sbjct: 60  VDIETKQV--ANKNTQYRIGSITKVFTSTMIFQLIDEGKLALDTKL 103


>gi|223694815|gb|ACN18097.1| beta-lactamase [uncultured bacterium BLR5]
          Length = 396

 Score = 39.5 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 34/110 (30%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSI-------------------VIDVNKNQMTG 68
           I L  +++ L    + + S     P  ++I                   VID  + Q++ 
Sbjct: 4   IVLPVRVMLLVAFCVPVTSIAQRMPTGAAIDTEVGKIMTRTNAKGMAVAVID--RGQISY 61

Query: 69  FKQ-------------DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
                           D   Y ASLTK +  Y + + +  +KL L+T + 
Sbjct: 62  VHAYGIRNAKGDPLTTDTVMYGASLTKTVFAYTVMQLVDQRKLTLDTPLK 111


>gi|254382272|ref|ZP_04997633.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. Mg1]
 gi|194341178|gb|EDX22144.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. Mg1]
          Length = 320

 Score = 39.5 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 54  YSSIVIDVNKNQMTGFK--QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           Y++ V DV        K  QD      S TK  T  ++ + +   K+ L+  +
Sbjct: 14  YTAGVGDVATG----AKVPQDGQVRIGSTTKTFTAVVVLQLVGEGKIDLDATV 62


>gi|21685580|gb|AAM74565.1|AF409092_1 carbenicillin-hydrolyzing beta-lactamase [Vibrio cholerae
           non-O1/non-O139]
          Length = 288

 Score = 39.5 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 7/118 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYPASLTK-MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +I+ D    +   +  D+     S  K +    ++++  +  K++LN+ + + K A    
Sbjct: 43  AIL-DTQNGESWDYNGDQRFPLTSTFKTIACAKLLYDA-EHGKVNLNSTVEI-KKADLVT 99

Query: 115 PSKLYLK-EKTYFTTEQGILALITRSANDVSTAF--GEFISGSEKKFAILMSNKAKKI 169
            S +  K      T     LA +T S N  +           S   F   + +K  ++
Sbjct: 100 YSPVLEKQVGKPITLSDACLATMTTSDNTAANIVINAVGDPKSITDFLRQIGDKETRL 157


>gi|330964051|gb|EGH64311.1| penicillin-binding protein [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 576

 Score = 39.5 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 34/125 (27%), Gaps = 30/125 (24%)

Query: 53  KYSSIVIDVNKNQMTG------FKQDEPR----------------YPASLTK-M-MTLYI 88
             S +++DV   ++        +  +  R                 P S  K + MT   
Sbjct: 244 AGSMVIMDVKTGEVLAMVNQPTYNPNNRRTMVPAAMRNRAIIDVFEPGSTMKPISMTA-- 301

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
               L S +     ++ V           +    KT          ++  S+N   +   
Sbjct: 302 ---ALDSGRWKPTDKVEVYPGTLQIGKYTIRDVTKTEGPVLDL-TGILINSSNVGMSKVA 357

Query: 149 EFISG 153
             + G
Sbjct: 358 FDVGG 362


>gi|322506442|gb|ADX01896.1| Extended-spectrum beta-lactamase PER-1 precursor [Acinetobacter
           baumannii 1656-2]
          Length = 293

 Score = 39.5 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 76/229 (33%), Gaps = 27/229 (11%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK--LYLKEKTYFT--T 128
           E     S+ K+    ++   +   KL LN  + V++    QN     +   +   F+   
Sbjct: 50  EKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFSVPV 109

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK---NASGLHDK 185
           +Q +   ++ S N       E + G        + +  + +G++ T            D+
Sbjct: 110 QQLLQYSVSHSDNVACDLLFELVGGP-----AALHDYIQSMGIKETAVVANEAQMHADDQ 164

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRK---FRYRNRIITNHNKLLNKMH------- 235
            Q             + K F Q  +     +   +++     T   +L   +        
Sbjct: 165 VQYQNWTSM-KGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAH 223

Query: 236 --NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ-ERDQKAL 281
                GIK G T  +  ++   L     P++  V    +++  R  +A+
Sbjct: 224 KTGTSGIKAGKT-AATNDLGIILLPDGRPLLVAVFVKDSAESSRTNEAI 271


>gi|308198799|gb|ADO17948.1| beta-lactamase CTX-M-98 [Escherichia coli]
 gi|313510882|gb|ADR66516.1| beta-lactamase CTX-M-98 [Escherichia coli]
          Length = 291

 Score = 39.5 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M +  + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAVAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|111018216|ref|YP_701188.1| beta lactamase [Rhodococcus jostii RHA1]
 gi|110817746|gb|ABG93030.1| possible beta lactamase [Rhodococcus jostii RHA1]
          Length = 272

 Score = 39.5 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           +++V+  ++  +  +   +  +P AS+TK++  Y +    +   + L+  
Sbjct: 16  AAVVLSYDEGVIGEYGDQQRVFPLASVTKLLCAYAVLVATEEGAVELDQP 65


>gi|288921150|ref|ZP_06415438.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Frankia sp. EUN1f]
 gi|288347459|gb|EFC81748.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Frankia sp. EUN1f]
          Length = 492

 Score = 39.5 bits (91), Expect = 0.83,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQD-EPRYPASLTKM 83
            +A  +   P  +++V+D    Q+   ++  EP  PAS  K+
Sbjct: 71  PLADPVLGNP--AALVVDALTGQVLFAQRSTEPTAPASTIKI 110


>gi|257416041|ref|ZP_05593035.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|257157869|gb|EEU87829.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
          Length = 295

 Score = 39.5 bits (91), Expect = 0.83,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 66/195 (33%), Gaps = 23/195 (11%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKL 98
           ++++   E       S +  D+   +          Y AS  K+ +T+ +  + + S + 
Sbjct: 51  LLVASVKEFEGTVGISYL--DLETGEQRSVNGQHEFYTASTIKVPLTMLVA-DTVASGQK 107

Query: 99  HLNTQIPVSKTAATQNPSKL---YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                IP +     +  + +    ++    +  +      IT S N       + + G  
Sbjct: 108 KWTDLIPYNAEEDYEEGTGIIAYNIQP--EYPLKTLQEYAITYSDNIAKNMLYDTLGGDA 165

Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF--PQYYKYF- 212
           K        +  +       Y + S   ++ Q ++     IL  L  +    P Y   + 
Sbjct: 166 KA-----KREMYQ------RYLHKSPSIEEPQFSSEDALVILQRLYTEKATKPDYQAIYD 214

Query: 213 SIRKFRYRNRIITNH 227
           S+++  +  R+ T  
Sbjct: 215 SMKQSVFHERMETPT 229


>gi|237511599|gb|ACQ99521.1| CTX-M-90 extended-spectrum beta-lactamase [Salmonella sp. YLD3]
 gi|260779996|gb|ACX50627.1| CTX-M-65 extended-spectrum beta-lactamase [Escherichia coli]
          Length = 291

 Score = 39.5 bits (91), Expect = 0.83,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M +  + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAVAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|312900698|ref|ZP_07759995.1| putative beta-lactamase [Enterococcus faecalis TX0470]
 gi|311292179|gb|EFQ70735.1| putative beta-lactamase [Enterococcus faecalis TX0470]
          Length = 295

 Score = 39.5 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 9/122 (7%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKL 98
           ++++   E       S +  D+   +          Y AS  K+ +T+ +  + + S + 
Sbjct: 51  LLVASVKEFEGTVGISYL--DLETGEQRSVNGQHEFYTASTIKVPLTMLVA-DTVASGQK 107

Query: 99  HLNTQIPVSKTAATQNPSKL---YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                IP +     +  + +    ++    +  +      IT S N       + + G  
Sbjct: 108 KWTDLIPYNAEEDYEEGTGIIAYNIQP--KYPLKTLQEYAITYSDNIAKNMLYDTLGGDA 165

Query: 156 KK 157
           K 
Sbjct: 166 KA 167


>gi|268323877|emb|CBH37465.1| conserved hypothetical protein, beta-lactamase family [uncultured
           archaeon]
          Length = 414

 Score = 39.5 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKK 97
            ++ ++     ++    + I       Q+   K D P Y AS+TK+ T   I +  +   
Sbjct: 62  CVLAVTKGDGSYSWAGAAGIA--TQDGQVPMTK-DTPIYIASITKLYTATAIMKLYEEGA 118

Query: 98  LHLNTQIPVSKT 109
           L L+   P+SK 
Sbjct: 119 LSLDD--PISKY 128


>gi|300860841|ref|ZP_07106928.1| putative beta-lactamase [Enterococcus faecalis TUSoD Ef11]
 gi|300849880|gb|EFK77630.1| putative beta-lactamase [Enterococcus faecalis TUSoD Ef11]
          Length = 315

 Score = 39.5 bits (91), Expect = 0.85,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 9/122 (7%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKL 98
           ++++   E       S +  D+   +          Y AS  K+ +T+ +  + + S + 
Sbjct: 71  LLVASVKEFEGTVGISYL--DLETGEQRSVNGQHEFYTASTIKVPLTMLVA-DTVASGQK 127

Query: 99  HLNTQIPVSKTAATQNPSKL---YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                IP +     +  + +    ++    +  +      IT S N       + + G  
Sbjct: 128 KWTDLIPYNAEEDYEEGTGIIAYNIQP--EYPLKTLQEYAITYSDNIAKNMLYDTLGGDA 185

Query: 156 KK 157
           K 
Sbjct: 186 KA 187


>gi|226359711|ref|YP_002777489.1| class A beta-lactamase [Rhodococcus opacus B4]
 gi|226238196|dbj|BAH48544.1| class A beta-lactamase [Rhodococcus opacus B4]
          Length = 317

 Score = 39.5 bits (91), Expect = 0.85,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 6/115 (5%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYI---IFEYLQSKKLHLN 101
           A E     +     +D     +   + DE     S  K    Y    +   ++     L+
Sbjct: 60  ALEAQYATRIGVTAVDPQTGAVYSHRGDERFAMCSTFK---AYASAAVLRKIEDGSTSLD 116

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
             + +      +N         T  T  Q   A +T+S N         I G + 
Sbjct: 117 KTVMIEPADLVENSPVTAAAVGTPMTLGQIAEAALTQSDNTAGNYLLREIGGPQA 171


>gi|210630517|ref|ZP_03296494.1| hypothetical protein COLSTE_00379 [Collinsella stercoris DSM 13279]
 gi|210160430|gb|EEA91401.1| hypothetical protein COLSTE_00379 [Collinsella stercoris DSM 13279]
          Length = 353

 Score = 39.5 bits (91), Expect = 0.85,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 53/151 (35%), Gaps = 12/151 (7%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMM-TLYIIFEYLQSKKLHLN 101
           S  + +  +   S + +D        ++ D   Y AS  K + ++Y+    ++  ++ L+
Sbjct: 102 SALAAIEEQGSVSMVFVDAQTGSGLAYQPDLVVYGASSFKALYSMYVCESLVEKGEVSLD 161

Query: 102 TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
               V+  A +                 + I A +  S N+   A  +      + F   
Sbjct: 162 DYCAVNWVADSSGGYSGGSYP-----VYELIEAAVIYSNNNAYGALRDAF--DFEGF--- 211

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             +    +G  + +Y+  S        ++AR
Sbjct: 212 -DDWVTGLGANDAVYREDSWFPTYAARSSAR 241


>gi|211774526|gb|ABV57756.3| beta-lactamase blaCTX-M [Klebsiella pneumoniae]
          Length = 291

 Score = 39.1 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M    + E  +++K  LN  + + + A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAAAAVLEQSETQKQLLNQPVEI-QPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S +         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDHTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|126438278|ref|YP_001073969.1| putative alanine rich lipoprotein LppW [Mycobacterium sp. JLS]
 gi|126238078|gb|ABO01479.1| putative conserved alanine rich lipoprotein LppW [Mycobacterium sp.
           JLS]
          Length = 310

 Score = 39.1 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 54/160 (33%), Gaps = 31/160 (19%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           + A+   +    +++V+D    Q+     D+    AS+ K+   +I  + L  +      
Sbjct: 77  ATANAAESGADINTVVLDRTTGQIVSDGADDSFPIASVVKL---FIADDLLLQE------ 127

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
                    +Q  +K  L      + +     ++ RS++D +     +  G +      +
Sbjct: 128 ---------SQGETK--LSAADRKSLD-----IMLRSSDDSAAQM-FWDRGGQNAIIARV 170

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
             +    G+  T        H     +TA D      +L 
Sbjct: 171 VAR---YGLTGT--TAPYNAHWDVTQSTAGDLVRYYRMLL 205


>gi|29376069|ref|NP_815223.1| beta-lactamase, putative [Enterococcus faecalis V583]
 gi|227553304|ref|ZP_03983353.1| beta-lactamase [Enterococcus faecalis HH22]
 gi|29343531|gb|AAO81293.1| beta-lactamase, putative [Enterococcus faecalis V583]
 gi|227177559|gb|EEI58531.1| beta-lactamase [Enterococcus faecalis HH22]
          Length = 313

 Score = 39.1 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 9/122 (7%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKL 98
           ++++   E       S +  D+   +          Y AS  K+ +T+ +  + + S + 
Sbjct: 71  LLVASVKEFEGTVGISYL--DLETGEQRSVNGQHEFYTASTIKVPLTMLVA-DTVASGQK 127

Query: 99  HLNTQIPVSKTAATQNPSKL---YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                IP +     +  + +    ++    +  +      IT S N       + + G  
Sbjct: 128 KWTDLIPYNAEEDYEEGTGIIAYNIQP--EYPLKTLQEYAITYSDNIAKNMLYDTLGGDA 185

Query: 156 KK 157
           K 
Sbjct: 186 KA 187


>gi|85091117|ref|XP_958745.1| hypothetical protein NCU09402 [Neurospora crassa OR74A]
 gi|28920128|gb|EAA29509.1| predicted protein [Neurospora crassa OR74A]
          Length = 474

 Score = 39.1 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 16/78 (20%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP----------------ASLTKMMTL 86
           S  S    K   ++ ++      +          P                ASLTK++T 
Sbjct: 21  SPTSSTKDKLHGAAFLVVDKSGPIYAGAAGHTSLPINASTPAFSTDSFLWVASLTKLLTT 80

Query: 87  YIIFEYLQSKKLHLNTQI 104
             + + +Q  KLHL+  +
Sbjct: 81  ICLMQLVQQGKLHLDEDV 98


>gi|315150597|gb|EFT94613.1| putative beta-lactamase [Enterococcus faecalis TX0012]
          Length = 312

 Score = 39.1 bits (90), Expect = 0.87,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 9/122 (7%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKL 98
           ++++   E       S +  D+   +          Y AS  K+ +T+ +  + + S + 
Sbjct: 70  LLVASVKEFEGTVGISYL--DLETGEQRSVNGQHEFYTASTIKVPLTMLVA-DTVASGQK 126

Query: 99  HLNTQIPVSKTAATQNPSKL---YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                IP +     +  + +    ++    +  +      IT S N       + + G  
Sbjct: 127 KWTDLIPYNAEEDYEEGTGIIAYNIQP--EYPLKTLQEYAITYSDNIAKNMLYDTLGGDA 184

Query: 156 KK 157
           K 
Sbjct: 185 KA 186


>gi|327535072|gb|AEA93906.1| beta-lactamase [Enterococcus faecalis OG1RF]
          Length = 315

 Score = 39.1 bits (90), Expect = 0.87,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 9/122 (7%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKL 98
           ++++   E       S +  D+   +          Y AS  K+ +T+ +  + + S + 
Sbjct: 71  LLVASVKEFEGTVGISYL--DLETGEQRSVNGQHEFYTASTIKVPLTMLVA-DTVASGQK 127

Query: 99  HLNTQIPVSKTAATQNPSKL---YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                IP +     +  + +    ++    +  +      IT S N       + + G  
Sbjct: 128 KWTDLIPYNAEEDYEEGTGIIAYNIQP--EYPLKTLQEYAITYSDNIAKNMLYDTLGGDA 185

Query: 156 KK 157
           K 
Sbjct: 186 KA 187


>gi|255975911|ref|ZP_05426497.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|255968783|gb|EET99405.1| conserved hypothetical protein [Enterococcus faecalis T2]
          Length = 315

 Score = 39.1 bits (90), Expect = 0.89,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 9/122 (7%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKL 98
           ++++   E       S +  D+   +          Y AS  K+ +T+ +  + + S + 
Sbjct: 71  LLVASVKEFEGTVGISYL--DLETGEQRSVNGQHEFYTASTIKVPLTMLVA-DTVASGQK 127

Query: 99  HLNTQIPVSKTAATQNPSKL---YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                IP +     +  + +    ++    +  +      IT S N       + + G  
Sbjct: 128 KWTDLIPYNAEEDYEEGTGIIAYNIQP--EYPLKTLQEYAITYSDNIAKNMLYDTLGGDA 185

Query: 156 KK 157
           K 
Sbjct: 186 KA 187


>gi|81238145|gb|ABB59946.1| extended-spectrum beta-lactamase CTX-M-82 [Escherichia coli]
 gi|291061255|gb|ADD73421.1| extended-spectrum beta-lactamase CTX-M-82 [Escherichia coli]
          Length = 291

 Score = 39.1 bits (90), Expect = 0.89,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFPMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|126174299|ref|YP_001050448.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Shewanella baltica OS155]
 gi|125997504|gb|ABN61579.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Shewanella baltica OS155]
          Length = 502

 Score = 39.1 bits (90), Expect = 0.89,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 4/39 (10%)

Query: 52 PKYSSIV---IDVNKNQMTGFKQDEPRY-PASLTKMMTL 86
          P++S I    +D++ NQ+   +Q E  + PAS  K++T 
Sbjct: 48 PRHSQIALLAMDMSNNQVIFSQQAETLFIPASTQKLLTA 86


>gi|330469075|ref|YP_004406818.1| beta-lactamase [Verrucosispora maris AB-18-032]
 gi|328812046|gb|AEB46218.1| beta-lactamase [Verrucosispora maris AB-18-032]
          Length = 439

 Score = 39.1 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            D      S+TK MT  +I +   + +L L+  +
Sbjct: 51  ADLQFRIGSITKTMTAVLIMQERDAGRLALDDPL 84


>gi|308175884|ref|YP_003915290.1| serine-type D-Ala-D-Ala carboxypeptidase [Arthrobacter arilaitensis
           Re117]
 gi|307743347|emb|CBT74319.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Arthrobacter
           arilaitensis Re117]
          Length = 454

 Score = 39.1 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQS 95
           L+  + ++ ++   K  +++ V+DV    +   +  E    PAS  K++T     + L  
Sbjct: 70  LTASLDAILADKSDKTSFNAQVVDVATGNVLYDRNSEINGTPASSLKVVTAIAALDAL-G 128

Query: 96  KKLHLNTQI 104
               L+T +
Sbjct: 129 GDTQLSTSV 137


>gi|305407949|dbj|BAJ15906.1| beta lactamase [Rhodococcus opacus]
          Length = 302

 Score = 39.1 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 16/134 (11%)

Query: 59  IDVNKNQMTGFKQDEPRYPASLTKMMTLYIIF-EYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID +   +     D+    AS+ K+  L +      +S +L     + ++    T  P+ 
Sbjct: 31  ID-DGGDI-AVGADDLVVLASVYKL-PLLVALCRAFESGELSPTATVRINPADCTPGPTG 87

Query: 118 L-YLKEKTYFTTEQGILALITRSANDVS-TAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           +   ++    +     L+++T S N  +    G+    S +           ++GM +T 
Sbjct: 88  VSTFRDPVVLSWRDLALSMMTVSDNAAADLVLGQVGLESVE-------RALSELGMTSTR 140

Query: 176 YKNASGLHDKNQIT 189
                G       +
Sbjct: 141 II---GGTADAHRS 151


>gi|229818434|ref|ZP_04448715.1| hypothetical protein BIFANG_03741 [Bifidobacterium angulatum DSM
           20098]
 gi|229784304|gb|EEP20418.1| hypothetical protein BIFANG_03741 [Bifidobacterium angulatum DSM
           20098]
          Length = 461

 Score = 39.1 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 7/75 (9%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI-----PVSKT 109
           S+ I      +   +  D  R PAS TK +T +     L+     L+T++       S T
Sbjct: 83  SVAIAAADGTIAAERNLDTEREPASTTKTLTAFTAVHTLEMS-GTLDTEVYLTHADTSPT 141

Query: 110 AATQNPSKLYLKEKT 124
              Q    + L E  
Sbjct: 142 IVLQGHGDMLLGEGQ 156


>gi|311747403|ref|ZP_07721188.1| putative D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Algoriphagus sp. PR1]
 gi|311302649|gb|EAZ79074.2| putative D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Algoriphagus sp. PR1]
          Length = 432

 Score = 39.1 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 58 VIDVNKNQMTGFKQDEPRY-PASLTKMMTL 86
          + D++   +   +  E R+ PAS TK+ TL
Sbjct: 51 LYDLDSQTVVFERNSEQRFIPASTTKLFTL 80


>gi|256853064|ref|ZP_05558434.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256711523|gb|EEU26561.1| conserved hypothetical protein [Enterococcus faecalis T8]
          Length = 315

 Score = 39.1 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 9/122 (7%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKL 98
           ++++   E       S +  D+   +          Y AS  K+ +T+ +  + + S + 
Sbjct: 71  LLVASVKEFEGTVGISYL--DLETGEQRSVNGQHEFYTASTIKVPLTMLVA-DTVASGQK 127

Query: 99  HLNTQIPVSKTAATQNPSKL---YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                IP +     +  + +    ++    +  +      IT S N       + + G  
Sbjct: 128 KWTDLIPYNAEEDYEEGTGIIAYNIQP--EYPLKTLQEYAITYSDNIAKNMLYDTLGGDA 185

Query: 156 KK 157
           K 
Sbjct: 186 KA 187


>gi|283784953|ref|YP_003364818.1| Beta-lactamase [Citrobacter rodentium ICC168]
 gi|282948407|emb|CBG87995.1| Beta-lactamase [Citrobacter rodentium ICC168]
          Length = 295

 Score = 39.1 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 3/111 (2%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
            + +Q+   + DE     S +K+M    + +  +++   L  +IP+ K   T        
Sbjct: 60  ADNSQLLY-RGDERFAMCSTSKVMVAAAVLKQSETRPAILQQKIPIKKADLTNWNPVTEK 118

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
                 T  +   A +  S N         + G  K   FA    +   ++
Sbjct: 119 YVGKEMTLAELSAATLQYSDNTAMNKLIAHLGGPGKVTAFARSTGDTTFRL 169


>gi|170588017|ref|XP_001898770.1| beta-lactamase [Brugia malayi]
 gi|158592983|gb|EDP31578.1| beta-lactamase, putative [Brugia malayi]
          Length = 504

 Score = 39.1 bits (90), Expect = 0.92,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 65  QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           Q+   K D     AS++K +T  +    +Q+ KLHL+  +
Sbjct: 78  QLVPCKSDTVMRIASISKPVTAALAARLVQNGKLHLDAPV 117


>gi|134293424|ref|YP_001117160.1| Beta-lactamase [Burkholderia vietnamiensis G4]
 gi|134136581|gb|ABO57695.1| Beta-lactamase [Burkholderia vietnamiensis G4]
          Length = 291

 Score = 39.1 bits (90), Expect = 0.93,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 41/142 (28%), Gaps = 13/142 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP----------KYSSIVIDVNKNQMTGFKQDE 73
           + R   L+G  L     M          P          +     ID    +  G + DE
Sbjct: 5   LLRRKLLIGLPLLAGTCMAPALRAAEESPLAEIERRSGGRLGVFAIDTGSGRTLGHRADE 64

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--ATQNPSKLYLKEKTYFTTEQG 131
                S  K +    I   + S    L+  +  ++     T   +K  + +    + E  
Sbjct: 65  RFLMCSTFKGLLAAQILARVDSGSERLDRLVHYTEKDLIFTSPVTKANVAQGA-MSIEAL 123

Query: 132 ILALITRSANDVSTAFGEFISG 153
             A++  S N  +        G
Sbjct: 124 CRAVLVESDNTAAILLMRSAGG 145


>gi|117620476|ref|YP_857133.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|60679103|gb|AAX33841.1| penicillin-binding protein [Aeromonas veronii bv. sobria]
 gi|117561883|gb|ABK38831.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 478

 Score = 39.1 bits (90), Expect = 0.93,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 21/59 (35%)

Query: 29 QLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLY 87
          +L+     L  +    A     +    +I++  N         D+   PAS  K++T  
Sbjct: 3  RLLIGFCALFSLAAQAAPLTPPQGGQYAIIVQGNNGVEFARHADQMIAPASTMKVLTAL 61


>gi|293382284|ref|ZP_06628223.1| putative beta-lactamase [Enterococcus faecalis R712]
 gi|293389456|ref|ZP_06633913.1| putative beta-lactamase [Enterococcus faecalis S613]
 gi|312907474|ref|ZP_07766465.1| putative beta-lactamase [Enterococcus faecalis DAPTO 512]
 gi|312910092|ref|ZP_07768939.1| putative beta-lactamase [Enterococcus faecalis DAPTO 516]
 gi|291080229|gb|EFE17593.1| putative beta-lactamase [Enterococcus faecalis R712]
 gi|291081073|gb|EFE18036.1| putative beta-lactamase [Enterococcus faecalis S613]
 gi|310626502|gb|EFQ09785.1| putative beta-lactamase [Enterococcus faecalis DAPTO 512]
 gi|311289365|gb|EFQ67921.1| putative beta-lactamase [Enterococcus faecalis DAPTO 516]
          Length = 293

 Score = 39.1 bits (90), Expect = 0.93,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 9/122 (7%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKL 98
           ++++   E       S +  D+   +          Y AS  K+ +T+ +  + + S + 
Sbjct: 51  LLVASVKEFEGTVGISYL--DLETGEQRSVNGQHEFYTASTIKVPLTMLVA-DTVSSGQK 107

Query: 99  HLNTQIPVSKTAATQNPSKL---YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                IP +     +  + +    ++    +  +      IT S N       + + G  
Sbjct: 108 KWTDLIPYNAEEDYEEGTGIIAYNIQP--EYPLKTLQEYAITYSDNIAKNMLYDTLGGDA 165

Query: 156 KK 157
           K 
Sbjct: 166 KA 167


>gi|256958922|ref|ZP_05563093.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|257078953|ref|ZP_05573314.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|294779092|ref|ZP_06744503.1| putative beta-lactamase [Enterococcus faecalis PC1.1]
 gi|256949418|gb|EEU66050.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256986983|gb|EEU74285.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|294453817|gb|EFG22208.1| putative beta-lactamase [Enterococcus faecalis PC1.1]
          Length = 315

 Score = 39.1 bits (90), Expect = 0.93,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 9/122 (7%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKL 98
           ++++   E       S +  D+   +          Y AS  K+ +T+ +  + + S + 
Sbjct: 71  LLVASVKEFEGTVGISYL--DLETGEQRSVNGQHEFYTASTIKVPLTMLVA-DTVASGQK 127

Query: 99  HLNTQIPVSKTAATQNPSKL---YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                IP +     +  + +    ++    +  +      IT S N       + + G  
Sbjct: 128 KWTDLIPYNAEEDYEEGTGIIAYNIQP--EYPLKTLQEYAITYSDNIAKNMLYDTLGGDA 185

Query: 156 KK 157
           K 
Sbjct: 186 KA 187


>gi|304388047|gb|ADM29148.1| Beta-lactamase [Staphylococcus aureus]
          Length = 295

 Score = 39.1 bits (90), Expect = 0.94,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 58/158 (36%), Gaps = 14/158 (8%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMI--SMASELHA-----KPKYSSIVIDVNKNQMTGFKQD 72
           G   +++ I L+   L LS      S A EL+              +D    +   F  D
Sbjct: 11  GGFILKKLIFLIVMALVLSACNSNSSHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSD 70

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           +    AS +K +   I+ E +   K  LN ++ ++K         L        T ++ I
Sbjct: 71  KRFAYASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITLKELI 128

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            A +T S N  +    + I G        +  + K++G
Sbjct: 129 EASMTYSDNTANNKIIKEIGG-----IKKVKQRLKELG 161


>gi|171188398|gb|ACB41777.1| extended spectrum beta-lactamase CTX-M-82 [Escherichia coli]
          Length = 291

 Score = 39.1 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M +  + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAVAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|319426358|gb|ADV54432.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Shewanella putrefaciens 200]
          Length = 504

 Score = 39.1 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 46 SELHAKPKYSSIV-IDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
          ++++ +   ++++ +D+  NQ+   +Q D    PAS  K++T       L
Sbjct: 44 ADINPRHSQTALLALDLANNQIIYSQQADTLLVPASTQKILTAVTAMAEL 93


>gi|77158013|gb|ABA62022.1| CTX-M-51 beta-lactamase [Escherichia coli]
          Length = 291

 Score = 39.1 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VID-VNKNQM 66
           + + +Q M       I ++  ++ L+A+      K +++           +ID  +  Q+
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQV 61

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTY 125
              + DE     S +K+M +  + +  +++K  LN  + + K A   N + +  K     
Sbjct: 62  LY-RGDERFPMCSTSKVMAVAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGT 119

Query: 126 FTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 120 MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|55820680|ref|YP_139122.1| MutT/nudix family protein [Streptococcus thermophilus LMG 18311]
 gi|55822571|ref|YP_141012.1| MutT/nudix family protein [Streptococcus thermophilus CNRZ1066]
 gi|55736665|gb|AAV60307.1| conserved hypothetical protein, MutT/nudix family protein
           [Streptococcus thermophilus LMG 18311]
 gi|55738556|gb|AAV62197.1| conserved hypothetical protein, MutT/nudix family protein
           [Streptococcus thermophilus CNRZ1066]
 gi|312278004|gb|ADQ62661.1| MutT/NUDIX hydrolase family protein [Streptococcus thermophilus
           ND03]
          Length = 152

 Score = 39.1 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 1/86 (1%)

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
              +     ++ ++ N+     G  I   E  F+ L     ++IG   T      G  D+
Sbjct: 24  IPNQDKTKIILVQAPNEAWFLPGGEIEAGENHFSALKRELIEEIGYTAT-LGQYYGQADE 82

Query: 186 NQITTARDQAILGILLRKNFPQYYKY 211
              ++ RD              + + 
Sbjct: 83  YFYSSHRDTYYYNPAYIYEVVDFSEI 108


>gi|48525543|gb|AAT45022.1| beta-lactamase KLUY-3 [Kluyvera sp. N03-0460]
 gi|56131251|gb|AAV80248.1| beta-lactamase KLUY-3 [Kluyvera sp. N03-0459]
          Length = 291

 Score = 39.1 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 60/168 (35%), Gaps = 26/168 (15%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKYSSI------------------VID-VNKN 64
           + + +Q M       I ++  ++ L+A+   S++                  +ID  +  
Sbjct: 2   VTKKVQRMMFAAAACIPLLLGSAPLYAQ--TSAVQQKLATLEKSSGGRLGVALIDTADNT 59

Query: 65  QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLYLKEK 123
           Q+   + DE     S +K+M    + +  +++K  LN  + +  T     NP        
Sbjct: 60  QVLY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIRPTDLVNYNPIAEKHVNG 118

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
           T  T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 119 T-MTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|148975586|ref|ZP_01812457.1| beta-lactamase [Vibrionales bacterium SWAT-3]
 gi|145965014|gb|EDK30265.1| beta-lactamase [Vibrionales bacterium SWAT-3]
          Length = 287

 Score = 39.1 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 58/165 (35%), Gaps = 19/165 (11%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKP------KYSS----IVIDVNKNQMTGFKQDE 73
           +++   L   +L       S++  L  +       + S+     V D    Q   +K DE
Sbjct: 1   MKKYTSLALVLLSAFFSTSSLSQSLKPESIEQIESRVSARIGVAVYDSATKQTWSYKGDE 60

Query: 74  PRYPASLTK-MMTLYIIFEYLQSKKLHLNTQIPV-SKTAATQNPSKLYLKEKTYFTTEQG 131
                S  K +    ++++      L L++++ + S+     +P    L +K   +    
Sbjct: 61  RFPMMSTFKTLACANLLYDAENKG-LDLDSKVSIKSRDLIVWSPVTKELVDKG-ISLRDA 118

Query: 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
             A +T S N         I G        ++   + IG  NT +
Sbjct: 119 CSATMTMSDNTAVNIVLGGIGGPNA-----LTQFLRSIGDSNTRF 158


>gi|326790380|ref|YP_004308201.1| peptidoglycan glycosyltransferase [Clostridium lentocellum DSM
           5427]
 gi|326541144|gb|ADZ83003.1| Peptidoglycan glycosyltransferase [Clostridium lentocellum DSM
           5427]
          Length = 704

 Score = 39.1 bits (90), Expect = 0.97,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 40/125 (32%), Gaps = 20/125 (16%)

Query: 51  KPKYSSIVIDVNKNQM--TGFKQDEP------------RYPASLTKMMTLYIIFEYLQSK 96
           +P+ + +V D     +      + E             R P S  K++  Y     L   
Sbjct: 405 QPQSAFVVTDYKTGAVKALYGGRGEKYYHGFNYATQAKRMPGSTFKVLAAY--APALNEG 462

Query: 97  KLHLNTQI---PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
           K+  +T I    VS T   +  S   L     +     I   I  S N ++        G
Sbjct: 463 KITPDTMIRNEKVSFT-IEEGGSWTPLNWNGQYQGSYTITQAIANSMNVIAAKVLVEQVG 521

Query: 154 SEKKF 158
            +K F
Sbjct: 522 IDKSF 526


>gi|108802296|ref|YP_642493.1| putative alanine rich lipoprotein LppW [Mycobacterium sp. MCS]
 gi|119871449|ref|YP_941401.1| putative alanine rich lipoprotein LppW [Mycobacterium sp. KMS]
 gi|108772715|gb|ABG11437.1| putative conserved alanine rich lipoprotein LppW [Mycobacterium sp.
           MCS]
 gi|119697538|gb|ABL94611.1| putative conserved alanine rich lipoprotein LppW [Mycobacterium sp.
           KMS]
          Length = 310

 Score = 39.1 bits (90), Expect = 0.97,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 54/160 (33%), Gaps = 31/160 (19%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           + A+   +    +++V+D    Q+     D+    AS+ K+   +I  + L  +      
Sbjct: 77  ATANAAESGADINTVVLDRTTGQIVSDGADDSFPIASVVKL---FIADDLLLQE------ 127

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
                    +Q  +K  L      + +     ++ RS++D +     +  G +      +
Sbjct: 128 ---------SQGETK--LSAADRKSLD-----IMLRSSDDSAAQM-FWDRGGQNAIIARV 170

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
             +    G+  T        H     +TA D      +L 
Sbjct: 171 VAR---YGLTGT--TAPYNAHWDVTQSTAGDLVRYYRMLL 205


>gi|208503029|gb|ACI29345.1| extended spectrum CTX-M-83 beta-lactamase [Salmonella enterica
           subsp. enterica serovar Derby]
          Length = 291

 Score = 39.1 bits (90), Expect = 0.98,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 62/165 (37%), Gaps = 20/165 (12%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSI-----------VIDVNKNQMT 67
           + + +Q M       I ++  ++ L+A+      K +++           +ID   N   
Sbjct: 2   VTKRVQRMMFAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTHV 61

Query: 68  GFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTYF 126
            ++ DE     S +K+M    + +  +++K  LN  + + K A   N + +  K      
Sbjct: 62  LYRGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNPIAEKHVNGTM 120

Query: 127 TTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
           T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 121 TLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 165


>gi|284042486|ref|YP_003392826.1| beta-lactamase [Conexibacter woesei DSM 14684]
 gi|283946707|gb|ADB49451.1| beta-lactamase [Conexibacter woesei DSM 14684]
          Length = 461

 Score = 39.1 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 8/65 (12%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSK 96
            S+ +++      A    ++ +++++         D      S+TK+ T  ++ + +   
Sbjct: 30  ASVAVLAGGQVATA----AAGLLNLDTG--VAATADSLFQIGSITKLYTATLVMQLVDEG 83

Query: 97  KLHLN 101
           ++ L+
Sbjct: 84  RIDLD 88


>gi|118467985|ref|YP_888728.1| beta-lactamase [Mycobacterium smegmatis str. MC2 155]
 gi|118169272|gb|ABK70168.1| beta-lactamase [Mycobacterium smegmatis str. MC2 155]
          Length = 414

 Score = 39.1 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           + D     AS TK MT  +I    Q  KL L+  +
Sbjct: 90  RPDTHFRIASNTKTMTAAVIMLLAQDGKLSLDDPV 124


>gi|37955063|gb|AAP22374.1| carbenicillin-hydrolyzing beta-lactamase [Vibrio cholerae
           non-O1/non-O139]
          Length = 288

 Score = 39.1 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 7/118 (5%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYPASLTK-MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           +I+ D    +   +  D+     S  K +    ++++  +  K++LN+ + V K A    
Sbjct: 43  AIL-DTQNGESWDYNGDQRFPLTSTFKTIACAKLLYDA-EHGKVNLNSTVEV-KKADLVT 99

Query: 115 PSKLYLK-EKTYFTTEQGILALITRSANDVSTAF--GEFISGSEKKFAILMSNKAKKI 169
            S +  K      T      A +T S N  +           S   F   + +K  ++
Sbjct: 100 YSPVLEKQVGKPITLSDACFATMTTSDNTAANIVINAVGDPKSITDFLRQIGDKETRL 157


>gi|300785357|ref|YP_003765648.1| beta-lactamase class C [Amycolatopsis mediterranei U32]
 gi|299794871|gb|ADJ45246.1| beta-lactamase class C [Amycolatopsis mediterranei U32]
          Length = 461

 Score = 39.1 bits (90), Expect = 1.00,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 16/44 (36%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +N         D      S+TK+ T  +  + +    L L+  +
Sbjct: 45  LNTGTGVEADVDSLFQIGSITKVWTATLAMQLVDDGVLDLDQPV 88


>gi|126651688|ref|ZP_01723891.1| beta-lactamase [Bacillus sp. B14905]
 gi|126591637|gb|EAZ85743.1| beta-lactamase [Bacillus sp. B14905]
          Length = 340

 Score = 39.1 bits (90), Expect = 1.00,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 71  QDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQI 104
            +E  + A S++K++T  ++ +  +  K+ L+  I
Sbjct: 44  NEETIFNACSISKLLTSILVLKLAEQGKIDLDEDI 78


>gi|325953730|ref|YP_004237390.1| beta-lactamase [Weeksella virosa DSM 16922]
 gi|323436348|gb|ADX66812.1| beta-lactamase [Weeksella virosa DSM 16922]
          Length = 349

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           D+  + AS TK+ T  II +     KL L+ +I
Sbjct: 46  DQSYFIASTTKLFTTAIILKLRAEGKLRLDDKI 78


>gi|256965183|ref|ZP_05569354.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256955679|gb|EEU72311.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
          Length = 313

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 9/122 (7%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKL 98
           ++++   E       S +  D+   +          Y AS  K+ +T+ +  + + S + 
Sbjct: 71  LLVASVKEFEGTVGISYL--DLETGEQRSVNGQHEFYTASTIKVPLTMLVA-DTVASGQK 127

Query: 99  HLNTQIPVSKTAATQNPSKL---YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                IP +     +  + +    ++    +  +      IT S N       + + G  
Sbjct: 128 KWTDLIPYNAEEDYEEGTGIIAYNIQP--KYPLKTLQEYAITYSDNIAKNMLYDTLDGDA 185

Query: 156 KK 157
           K 
Sbjct: 186 KA 187


>gi|253988588|ref|YP_003039944.1| peptidoglycan synthetase FtsI [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780038|emb|CAQ83199.1| peptidoglycan synthetase ftsi (penicillin-binding protein 3)
           (pbp-3) [Photorhabdus asymbiotica]
          Length = 588

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 54/154 (35%), Gaps = 32/154 (20%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGFKQD----------------------EPRYPAS 79
           ++ A   +     +++++DVN  ++     +                      +   P S
Sbjct: 247 LTNAVAFNKAESGTAVLVDVNTGEVLAMANNPSYNPNNFLNTPKDAMRNRAITDIFEPGS 306

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
             K M   ++   L +  +  NT I           S   +K+ + ++ E  I  ++ +S
Sbjct: 307 TVKPM---VVMAALDNGIIKENTVI----NTVPFRISGKEIKDVSRYS-ELSITGILQKS 358

Query: 140 ANDVSTAFGEFISGSE--KKFAILMSNKAKKIGM 171
           +N   +     +  +E    ++     KA  +G+
Sbjct: 359 SNVGVSKLALAMPATELVDVYSRFGLGKATNLGL 392


>gi|220683460|gb|ACL80551.1| TEM beta-lactamase [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|220683462|gb|ACL80552.1| TEM beta-lactamase [Salmonella enterica subsp. enterica serovar
           Bonn]
          Length = 103

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 5/104 (4%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+   
Sbjct: 1   RVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDL 60

Query: 112 TQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
            +    ++ +L +    T  +   A IT S N  +      I G
Sbjct: 61  VEYSPVTEKHLTDG--MTVRELCSAAITMSDNTAANLLLTTIGG 102


>gi|126727932|ref|ZP_01743758.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Rhodobacterales bacterium HTCC2150]
 gi|126702792|gb|EBA01899.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Rhodobacterales bacterium HTCC2150]
          Length = 499

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 8/77 (10%)

Query: 53  KYSSIVIDVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           K S +V D    ++           PAS+ K +T    +E L             S    
Sbjct: 63  KVSCVVADARTGKVLEVLNPVLQLPPASVAKAITALYAWENLGPGH-------RFSTRVL 115

Query: 112 TQNPSKLYLKEKTYFTT 128
           ++  +   + +      
Sbjct: 116 SEGQTNNGVVQGDIMLV 132


>gi|322368447|ref|ZP_08043016.1| beta-lactamase [Haladaptatus paucihalophilus DX253]
 gi|320552463|gb|EFW94108.1| beta-lactamase [Haladaptatus paucihalophilus DX253]
          Length = 297

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 9/100 (9%)

Query: 78  ASLTKMMTLYIIFEYLQSKK--LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           AS  K+   Y ++E   +      L+   P+S        S L        T E    A+
Sbjct: 57  ASTVKLPVFYALYERYDADDRLDELDRPCPLSPE-NRVGGSGLLHLLNATPTVEDLARAM 115

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           I+ S N  +    + +  S       +++ A ++GM  T 
Sbjct: 116 ISVSDNAATNQLIDHLGMS------AVNDAAARLGMDRTR 149


>gi|115361045|ref|YP_778182.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria
           AMMD]
 gi|115286373|gb|ABI91848.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria
           AMMD]
          Length = 420

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 46/162 (28%)

Query: 17  YPYGSIYIQRNIQLMGKILFLSIIMIS-----------MASELHAKPKYSSIVIDVNK-N 64
           +P  +  + R +  +   L +SI + S            A    A+P+  +++ D     
Sbjct: 10  FPRAAKRLMRRVAAIAPALAVSIAVSSCGGDSSVSSGEPAFATEARPQIDALLADTMTPG 69

Query: 65  QMTGFKQDEPRYPA----------------------SLTKMMTLYIIFEYLQSKKLHLNT 102
            +   +     + A                      S+TK  T  +I + +Q  +LHL  
Sbjct: 70  AVVYVQSPHGNWLASFGTAVRGTNTPIPTNAHFRVGSVTKTWTGTVILQLVQEGRLHLTD 129

Query: 103 QIPVSKTAATQNPSKLYLKEKTYFTTEQGIL---ALITRSAN 141
            +  S+  A               T EQ +     L   S N
Sbjct: 130 HV--SQYVANVP-------NGDSITIEQLLTMRSGLYNYSTN 162


>gi|262396687|ref|YP_003288540.1| beta-lactamase [Vibrio sp. Ex25]
 gi|262340281|gb|ACY54075.1| beta-lactamase [Vibrio sp. Ex25]
          Length = 283

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 53/154 (34%), Gaps = 8/154 (5%)

Query: 24  IQRNIQLMGKILFLSIIMISMASE---LHAKPKYSSI---VIDVNKNQMTGFKQDEPRYP 77
           +++   L G ++  ++   S  +E   L  +   S I   V D   ++   ++ DE    
Sbjct: 1   MKKLFLLAGLMVCSTLSYSSQLNEDISLIEQQTSSRIGVSVWDTQTDERWDYRGDERFPL 60

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
            S  K +    +   + S KL  N    + + +       +          E    A + 
Sbjct: 61  MSTFKTLACATMLSDMDSGKLSKNATAKIDERSIVVWSPVMDKLAGQSTRVEHACEAAML 120

Query: 138 RSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            S N  +      I G +    F   + +KA ++
Sbjct: 121 MSDNTAANLVLNEIGGPKAVTMFLRSIGDKATRL 154


>gi|171318562|ref|ZP_02907712.1| Beta-lactamase [Burkholderia ambifaria MEX-5]
 gi|171096263|gb|EDT41171.1| Beta-lactamase [Burkholderia ambifaria MEX-5]
          Length = 305

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 40/113 (35%), Gaps = 5/113 (4%)

Query: 62  NKN--QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQNPSKL 118
           +    +   ++ DE     S  K ++   +       KL L+  +   KT      P   
Sbjct: 65  DTGLRRRLQYRADESFAMCSTHKFLSAVAVLSLADQGKLDLDKPVKYGKTDILDYAPVAK 124

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
              ++ + T ++   A    S N  +    E + G     +FA  + + A ++
Sbjct: 125 KHVDRGFMTVDELCAAATVWSDNTAANLLIELLGGPAGWTRFARSIGDNASRL 177


>gi|125658592|gb|ABN49115.1| beta-lactamase SHV-71 [Shigella sp. SHV-71]
 gi|160948433|emb|CAJ47126.2| beta-lactamase [Klebsiella pneumoniae]
          Length = 286

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 63/202 (31%), Gaps = 39/202 (19%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAK----------PKYSSIVIDVNKNQMT-GFKQDEP 74
           R I+L    L  ++ +   AS    +           +   I +D+   +    ++ DE 
Sbjct: 2   RYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADER 61

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQI-----------PVSKTAATQNPSKLYLKEK 123
               S  K++    +   + +    L  +I           PVS+          YL + 
Sbjct: 62  FPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEK---------YLADG 112

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSE--KKFAILMSNKAKKIGMQNTIYKNASG 181
              T  +   A IT S N  +      + G      F   + +   ++    T    A  
Sbjct: 113 --MTVGELCAAAITMSDNSAANLLLATVGGPVGLTAFLRQIGDNVTRLDRWETELNEALP 170

Query: 182 LHDKNQITTARDQAILGILLRK 203
              ++  T A     +   LRK
Sbjct: 171 GDARDTTTPA----SMAATLRK 188


>gi|333029538|ref|ZP_08457599.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
          anine-endopeptidase [Bacteroides coprosuis DSM 18011]
 gi|332740135|gb|EGJ70617.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
          anine-endopeptidase [Bacteroides coprosuis DSM 18011]
          Length = 459

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 58 VIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
          V +++K+Q+           PAS  K++T     EY 
Sbjct: 41 VYNLSKDQLIYEHNANKLARPASTLKLLTAITALEYH 77


>gi|296113803|ref|YP_003627741.1| beta-lactamase family protein BRO-2 [Moraxella catarrhalis RH4]
 gi|295921497|gb|ADG61848.1| beta-lactamase family protein BRO-2 [Moraxella catarrhalis RH4]
 gi|326565670|gb|EGE15833.1| beta-lactamase family protein BRO-2 [Moraxella catarrhalis 12P80B1]
          Length = 313

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 71/224 (31%), Gaps = 35/224 (15%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYII---FEYLQSKKLHLNTQIPV--SKTAATQNP 115
            +  +++  + +E     S  K    +I       +  +KL LN +I +  S        
Sbjct: 72  ADNGELSSHRGNEYFPVNSTIK---AFIASHILLLVDKEKLDLNEKIIIKESDLIEYSPV 128

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG----- 170
            K Y  E    +  +   A IT S N  +    + I G    F    +   K+IG     
Sbjct: 129 CKKYFDENKPISISELCEATITLSDNGSANILLDKIGG-LTAF----NQFLKEIGADMVL 183

Query: 171 ------MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII 224
                 +  + Y   S        T +    I+G +L     +    + I      +++ 
Sbjct: 184 ANNEPLLNRSHYGETSDTAKPIPYTKSLKALIVGNILSNQSKEQLITWLI-----NDKVA 238

Query: 225 TNHNKLLNKM---HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            N   LL K    +   G KTG    S   I       + P   
Sbjct: 239 DN---LLRKYLPKNWRIGDKTGTGSESKNIIAVIWNENNKPYFI 279


>gi|227513578|ref|ZP_03943627.1| class A beta-lactamase [Lactobacillus buchneri ATCC 11577]
 gi|227083451|gb|EEI18763.1| class A beta-lactamase [Lactobacillus buchneri ATCC 11577]
          Length = 250

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 65/177 (36%), Gaps = 19/177 (10%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKLHLNTQIPVSK 108
            P+   ++I VN  Q      ++    ASL K+    +  + +        L+ +I V +
Sbjct: 16  APETIGLIIKVNHEQKLAVNANKAFRSASLIKL--AILNDVLDSH----FDLDKEIHVRR 69

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                    L L  +  F  +  +  +I+ S N  +    + I          ++    K
Sbjct: 70  DKLVGGAGVLQLLSERIFQLKDLLALMISVSDNSATNLVIDLIG------MDHVNQYLSK 123

Query: 169 IGMQNTIY----KNASGLHD-KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
           +G   T       + + L + K+  TT  +   L  +   N P    +F  ++FRY+
Sbjct: 124 MGFYKTRLNRYLMDTNALENGKDNYTTPAESQRLLEMAIANHPMTKTWFLNQQFRYK 180


>gi|255600995|ref|XP_002537582.1| Beta-lactamase precursor, putative [Ricinus communis]
 gi|223515845|gb|EEF24801.1| Beta-lactamase precursor, putative [Ricinus communis]
          Length = 302

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 5/104 (4%)

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYF 126
            G+++ E     S  K++ + ++ +   +++  L+ ++         N      +     
Sbjct: 64  VGYRESERFPMCSTFKLLVVALVLKRSMAERGLLDERVRYGDADLVANSPVTKRRVGEGM 123

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           T  +   A +  S N  +      + G E     +++  A  IG
Sbjct: 124 TIGELSAAALQHSDNTAANLLLTAVGGPE-----VLNQFALSIG 162


>gi|2565295|gb|AAB81957.1| extended spectrum beta-lactamase [Nocardia farcinica]
          Length = 297

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 74/239 (30%), Gaps = 10/239 (4%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAATQNPS 116
            +D        ++ DE    AS  K +    +         + +  +  S +   + +P 
Sbjct: 57  AVDTTSGAEVAYRADERFGMASTFKGLACGALLREHPLSSGYFDQVVRYSREEVVSYSPV 116

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNT 174
               +  T  T  +   A IT S N       + + G      F   + ++  ++    T
Sbjct: 117 TET-RVDTGMTVAELCHATITVSDNTAGNQILKLLGGPAGFTAFLRSLGDEVSRLDRWET 175

Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
                    +++  T A   A    L+  +     +   +R +   N       +     
Sbjct: 176 ELNEVPPGEERDTTTPAAVAANYRALVLGDVLAEPERAQLRDWLVANTTGDQRIRAGVPA 235

Query: 235 HNIDGIKTGYTRNSGFNIVTSL-RYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKT 292
               G KTG   + G N V        DPIV  ++       R   A +   + L + T
Sbjct: 236 GWTVGDKTGGGSHGGNNDVAVAWTETGDPIVIALL-----SHRTDPAAKADNALLAEAT 289


>gi|77464153|ref|YP_353657.1| penicillin binding protein [Rhodobacter sphaeroides 2.4.1]
 gi|77388571|gb|ABA79756.1| possible penicillin binding protein [Rhodobacter sphaeroides
          2.4.1]
          Length = 485

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 10/33 (30%), Gaps = 1/33 (3%)

Query: 56 SIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLY 87
           +V D     +           PAS  K +T  
Sbjct: 58 YVVADARSGTVLEAANAALRLPPASTAKTVTAL 90


>gi|317472784|ref|ZP_07932095.1| hypothetical protein HMPREF1011_02445 [Anaerostipes sp. 3_2_56FAA]
 gi|316899703|gb|EFV21706.1| hypothetical protein HMPREF1011_02445 [Anaerostipes sp. 3_2_56FAA]
          Length = 53

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 237 IDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVMGMPTSQERDQKALELI 284
           + G KTG T  +G  ++   +  + +  ++V++   + Q       E++
Sbjct: 1   MLGGKTGTTTEAGSCLIILTKNEEGEEFISVILKASSKQTLYHTMTEVL 49


>gi|302534249|ref|ZP_07286591.1| beta-lactamase [Streptomyces sp. C]
 gi|302443144|gb|EFL14960.1| beta-lactamase [Streptomyces sp. C]
          Length = 273

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 17/138 (12%)

Query: 73  EPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           + R+P AS+TK +  Y +    +   L L+        A  +  +  +L   T       
Sbjct: 34  DRRFPLASVTKPLAAYAVLVAYEEGALELDEP------AGPEGSTVRHLLAHTSGLAFDE 87

Query: 132 ILALITRS-----ANDVSTAFGEFIS-GSEKKFAILMSNKAKK-IGMQNTIYKNASGLHD 184
             A          +N      G+ ++  +   FA  +     + +GM ++   +  G   
Sbjct: 88  HRATAPPGQRRLYSNAGFEVLGDHLAKATGIPFAEYLHQAVFEPLGMTSS---SLEGSPA 144

Query: 185 KNQITTARDQAILGILLR 202
           K+ ++T  D A     L+
Sbjct: 145 KDGVSTVADLARFAAELQ 162


>gi|300776066|ref|ZP_07085925.1| beta-lactamase [Chryseobacterium gleum ATCC 35910]
 gi|300505199|gb|EFK36338.1| beta-lactamase [Chryseobacterium gleum ATCC 35910]
          Length = 536

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQI 104
           S TKM T  +IF+  +  KL LN ++
Sbjct: 77  STTKMFTAAVIFQLAEQGKLSLNDKL 102


>gi|133919281|emb|CAM12803.1| class A beta-lactamase [Leminorella grimontii]
          Length = 294

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 62/164 (37%), Gaps = 21/164 (12%)

Query: 26  RNIQLMGK-----ILFLSIIMISMASELH------AKPKYSS------IVIDVNKNQMTG 68
           R   LM       +L  + +  S AS+        A  + S+       +ID   N    
Sbjct: 6   RRTALMAAAVAPLLLGCAPLWASAASDAAGIQQKLANLEKSAGGRLGVALIDTEDNSRVL 65

Query: 69  FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTYFT 127
           ++ DE     S +K+M +  + +  ++ K  L+ +I + K A   N + +  K   +  T
Sbjct: 66  YRGDERFAMCSTSKVMAVAAVLKQSETDKGVLSKKIKI-KKADLVNWNPITEKHVNSSMT 124

Query: 128 TEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
            E+   A +  S N         + G  K   FA  + +   ++
Sbjct: 125 LEELSAATLQYSDNVAMNKIIAHLGGPNKVTAFARSIDDTTFRL 168


>gi|94264598|ref|ZP_01288382.1| Peptidase S13, D-Ala-D-Ala carboxypeptidase C [delta
          proteobacterium MLMS-1]
 gi|93454952|gb|EAT05189.1| Peptidase S13, D-Ala-D-Ala carboxypeptidase C [delta
          proteobacterium MLMS-1]
          Length = 428

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)

Query: 64 NQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
           ++      D+P  PAS  K+ T  +  + L
Sbjct: 40 GRLLAAHNLDQPLTPASTWKIATALLALDRL 70


>gi|30171149|gb|AAO59455.1| beta-lactamase CARB-8 [Oligella urethralis]
          Length = 298

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 66/190 (34%), Gaps = 13/190 (6%)

Query: 28  IQLMGKILFLSIIMISMASE------LHAKPKYSS----IVIDVNKNQMTGFKQDEPRYP 77
             ++   L L++ + + A++       +A+ +  +     V D+   +    K +E    
Sbjct: 11  FSVVITFLCLTLSLNANATDSVLEAVTNAETELGARIGLAVHDLETGKRWEHKSNERFPL 70

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK-TAATQNPSKLYLKEKTYFTTEQGILALI 136
           +S  K +    + + +   K  ++  +  S+    T +P       K   +  +   A +
Sbjct: 71  SSTFKTLACANVLQRVDLGKERIDRVVRFSESNLVTYSPVTEKHVGKKGMSLAELCQATL 130

Query: 137 TRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           + S N  +    + I G +   KF   + +   ++    T    A     ++  T     
Sbjct: 131 STSDNSAANFILQAIGGPKALTKFLRSIGDDTTRLDRWETELNEAVPGDKRDTTTPIAMV 190

Query: 195 AILGILLRKN 204
             L  LL   
Sbjct: 191 TTLEKLLIDE 200


>gi|7381165|gb|AAF61417.1|AF135373_1 class A beta-lactamase blaCARB-5 [Acinetobacter calcoaceticus
           subsp. anitratus]
          Length = 298

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 66/190 (34%), Gaps = 13/190 (6%)

Query: 28  IQLMGKILFLSIIMISMASE------LHAKPKYSS----IVIDVNKNQMTGFKQDEPRYP 77
             ++   L L++ + + A++       +A+ +  +     V D+   +    K +E    
Sbjct: 11  FSVVITFLCLTLSLNANATDSVLEAVTNAETELGARIGLAVHDLETGKRWEHKSNERFPL 70

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK-TAATQNPSKLYLKEKTYFTTEQGILALI 136
           +S  K +    + + +   K  ++  +  S+    T +P       K   +  +   A +
Sbjct: 71  SSTFKTLACANVLQRVDLGKERIDRVVRFSESNLVTYSPVTEKHVGKKGMSLAELCQATL 130

Query: 137 TRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           + S N  +    + I G +   KF   + +   ++    T    A     ++  T     
Sbjct: 131 STSDNSAANFILQAIGGPKALTKFLRSIGDDTTRLDRWETELNEAVPGDKRDTTTPIAMV 190

Query: 195 AILGILLRKN 204
             L  LL   
Sbjct: 191 TTLEKLLIDE 200


>gi|257085241|ref|ZP_05579602.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256993271|gb|EEU80573.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
          Length = 293

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 9/122 (7%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKL 98
           ++++   E       S +  D+   +          Y AS  K+ +T+ +  + + S + 
Sbjct: 51  LLVASVKEFEGTVGISYL--DLETGEQRSVNGQHEFYTASTIKVPLTMLVA-DTVASGQK 107

Query: 99  HLNTQIPVSKTAATQNPSKL---YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                IP +     +  + +    ++    +  +      IT S N       + + G  
Sbjct: 108 KWTDLIPYNAEEDYEEGTGIIAYNIQP--EYPLKTLQEYAITYSDNIAKNMLYDTLGGDA 165

Query: 156 KK 157
           K 
Sbjct: 166 KA 167


>gi|125658582|gb|ABN49110.1| beta-lactamase SHV-93 [Klebsiella pneumoniae]
          Length = 286

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 63/202 (31%), Gaps = 39/202 (19%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAK----------PKYSSIVIDVNKNQMT-GFKQDEP 74
           R I+L    L  ++ +   AS    +           +   I +D+   +    ++ DE 
Sbjct: 2   RYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADER 61

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQI-----------PVSKTAATQNPSKLYLKEK 123
               S  K++    +   + +    L  +I           PVS+          +L + 
Sbjct: 62  FPMMSTFKVVLCGTVLARVDAGDEQLERKIHYRQQDLVDYSPVSEK---------HLADG 112

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNASG 181
              T  +   A IT S N  +      + G      F   + +   ++    T    A  
Sbjct: 113 --MTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIDDNVTRLDRWETELNEALP 170

Query: 182 LHDKNQITTARDQAILGILLRK 203
              ++  T A     +   LRK
Sbjct: 171 GDARDTTTPA----SMAATLRK 188


>gi|150003677|ref|YP_001298421.1| putative exported D-alanyl-D-alanine carboxypeptidase
           penicillin-binding protein [Bacteroides vulgatus ATCC
           8482]
 gi|149932101|gb|ABR38799.1| putative exported D-alanyl-D-alanine carboxypeptidase
           penicillin-binding protein [Bacteroides vulgatus ATCC
           8482]
          Length = 466

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 20/90 (22%)

Query: 31  MGKILFLSIIMISMASELHAKP--------------KYSSI---VIDVNKNQMTGFKQDE 73
           M ++LF  ++++S+   ++A+P              K S +   V D+   +     QDE
Sbjct: 1   MKRVLFFFLLILSIHF-INAQPLSQRLDALLHEEVLKTSEVGIAVFDLTTGKSVYRYQDE 59

Query: 74  PRY-PASLTKMMTLYIIFEYLQSKKLHLNT 102
             Y PAS+ K++T       L +    ++T
Sbjct: 60  KLYRPASVEKIITSVTALAQLGA-DYTMDT 88


>gi|11513941|pdb|1E25|A Chain A, The High Resolution Structure Of Per-1 Class A Beta-
           Lactamase
          Length = 282

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 25/228 (10%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK--LYLKEKTYFT--T 128
           E     S+ K+    ++   +   KL LN  + V++    QN     +   +   F+   
Sbjct: 39  EKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFSVPV 98

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK---NASGLHDK 185
           +Q +   ++ S N       E + G        + +  + +G++ T            D+
Sbjct: 99  QQLLQYSVSHSDNVACDLLFELVGGP-----AALHDYIQSMGIKETAVVANEAQMHADDQ 153

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSI-----RKFRYRNRIITNHNKLLNKMHNIDGI 240
            Q             + K F Q  +          K+           K L     +   
Sbjct: 154 VQYQNWTSM-KGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAH 212

Query: 241 KTGYTR-NSGFNIVTS-----LRYKDDPIVAVVMGMPTSQ-ERDQKAL 281
           KTG ++  +G    T+     L     P++  V    +++  R  +A+
Sbjct: 213 KTGTSQIKAGKTAATNDLGIILLPDGRPLLVAVFVKDSAESSRTNEAI 260


>gi|256762437|ref|ZP_05503017.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|257086805|ref|ZP_05581166.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|256683688|gb|EEU23383.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256994835|gb|EEU82137.1| conserved hypothetical protein [Enterococcus faecalis D6]
          Length = 295

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 9/122 (7%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKL 98
           ++++   E       S +  D+   +          Y AS  K+ +T+ +  + + S + 
Sbjct: 51  LLVASVKEFEGTVGISYL--DLETGEQRSVNGQHEFYTASTIKVPLTMLVA-DTVASGQK 107

Query: 99  HLNTQIPVSKTAATQNPSKL---YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                IP +     +  + +    ++    +  +      IT S N       + + G  
Sbjct: 108 KWTDLIPYNAEEDYEEGTGIIAYNIQP--EYPLKTLQEYAITYSDNIAKNMLYDTLGGDA 165

Query: 156 KK 157
           K 
Sbjct: 166 KA 167


>gi|254385669|ref|ZP_05000992.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. Mg1]
 gi|194344537|gb|EDX25503.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. Mg1]
          Length = 476

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 5/42 (11%)

Query: 47  ELHAKPKY----SSIVIDVNKNQMTGF-KQDEPRYPASLTKM 83
            L A P      S+ VID    ++    K  EP  PAS  K+
Sbjct: 97  PLFADPALGSLRSASVIDTATGRVLYEAKPREPMTPASTVKI 138


>gi|186475929|ref|YP_001857399.1| beta-lactamase [Burkholderia phymatum STM815]
 gi|184192388|gb|ACC70353.1| Beta-lactamase [Burkholderia phymatum STM815]
          Length = 300

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 75/235 (31%), Gaps = 9/235 (3%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-TQN 114
           +I+ D    Q+ G++  E     S  K +    +       K  L  +I  +K A    +
Sbjct: 59  AIL-DTANGQLQGWRARERFPMCSTFKFLLASAVLMRKDQGKEQLGRRIVYAKDAVVANS 117

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQ 172
           P           T  +   A +TRS N  +    E I G      FA  + +   ++   
Sbjct: 118 PVSGPRAGGDGMTVSELCEAALTRSDNTAANLLLESIGGPPALTVFARGIGDGVTRLDRN 177

Query: 173 NTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN 232
                 A     ++  T A   A +  +L            +  +   N+      +   
Sbjct: 178 EPTLNEAIEGDPRDTTTPAAMIADMRAMLLGEHLSAASRQHLTVWLVANKTGDTRLRAGL 237

Query: 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDP--IVAVVM-GM--PTSQERDQKALE 282
                 G KTG       N +  +     P  +VAV + G    ++ +RD    +
Sbjct: 238 PPDWRVGDKTGTGERGTSNDIAIVWPAGRPPVLVAVYLTGATQTSAAQRDAAIAK 292


>gi|294633661|ref|ZP_06712219.1| beta-lactamase [Streptomyces sp. e14]
 gi|292830303|gb|EFF88654.1| beta-lactamase [Streptomyces sp. e14]
          Length = 392

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 6/72 (8%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119
           D+   Q      D      S TK     ++ +     +L L+  +     A      + +
Sbjct: 75  DLRTGQPVAT--DGYLRIGSTTKTFVAVVVLQLAGEGRLSLDDTV----DAWLPGLVRGH 128

Query: 120 LKEKTYFTTEQG 131
             +    T  Q 
Sbjct: 129 GNDGREVTLRQL 140


>gi|300775320|ref|ZP_07085182.1| beta-lactamase [Chryseobacterium gleum ATCC 35910]
 gi|300506060|gb|EFK37196.1| beta-lactamase [Chryseobacterium gleum ATCC 35910]
          Length = 420

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/63 (12%), Positives = 26/63 (41%), Gaps = 15/63 (23%)

Query: 57  IVIDVNKNQMTGFK--------------QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           I++    +++                  ++ P + AS++K +T   + + +++ K+ L  
Sbjct: 82  ILV-AKGDEILYENYRGFGREGNQMPIDKNTPLHVASVSKTLTAMAMMKLIEAGKIKLTD 140

Query: 103 QIP 105
            + 
Sbjct: 141 HLT 143


>gi|2497581|sp|Q59514|BLA1_MORCA RecName: Full=Beta-lactamase BRO-1; AltName: Full=Penicillinase;
           Flags: Precursor
 gi|1224070|gb|AAA92126.1| beta-lactamase BRO-1 [Moraxella catarrhalis]
 gi|326562148|gb|EGE12476.1| beta-lactamase family protein BRO-2 [Moraxella catarrhalis 7169]
 gi|326566239|gb|EGE16391.1| beta-lactamase family protein BRO-2 [Moraxella catarrhalis
           103P14B1]
 gi|326567109|gb|EGE17231.1| beta-lactamase family protein BRO-2 [Moraxella catarrhalis BC1]
 gi|326568373|gb|EGE18453.1| beta-lactamase family protein BRO-2 [Moraxella catarrhalis BC7]
 gi|326572274|gb|EGE22269.1| beta-lactamase family protein BRO-2 [Moraxella catarrhalis BC8]
 gi|326574288|gb|EGE24235.1| beta-lactamase family protein BRO-2 [Moraxella catarrhalis O35E]
 gi|326574872|gb|EGE24802.1| beta-lactamase family protein BRO-2 [Moraxella catarrhalis
           101P30B1]
 gi|326576196|gb|EGE26111.1| beta-lactamase family protein BRO-2 [Moraxella catarrhalis CO72]
          Length = 313

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 71/224 (31%), Gaps = 35/224 (15%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYII---FEYLQSKKLHLNTQIPV--SKTAATQNP 115
            +  +++  + +E     S  K    +I       +  +KL LN +I +  S        
Sbjct: 72  ADNGELSSHRGNEYFPVNSTIK---AFIASHILLLVDKEKLDLNEKIIIKESDLIEYSPV 128

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG----- 170
            K Y  E    +  +   A IT S N  +    + I G    F    +   K+IG     
Sbjct: 129 CKKYFDENKPISISELCEATITLSDNGSANILLDKIGG-LTAF----NQFLKEIGADMVL 183

Query: 171 ------MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII 224
                 +  + Y   S        T +    I+G +L     +    + I      +++ 
Sbjct: 184 ANNEPLLNRSHYGETSDTAKPIPYTKSLKALIVGNILSNQSKEQLITWLI-----NDKVA 238

Query: 225 TNHNKLLNKM---HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            N   LL K    +   G KTG    S   I       + P   
Sbjct: 239 DN---LLRKYLPKNWRIGDKTGTGSESKNIIAVIWNENNKPYFI 279


>gi|254881094|ref|ZP_05253804.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319640101|ref|ZP_07994828.1| exported D-alanyl-D-alanine carboxypeptidase penicillin-binding
           protein [Bacteroides sp. 3_1_40A]
 gi|254833887|gb|EET14196.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317388379|gb|EFV69231.1| exported D-alanyl-D-alanine carboxypeptidase penicillin-binding
           protein [Bacteroides sp. 3_1_40A]
          Length = 466

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 20/90 (22%)

Query: 31  MGKILFLSIIMISMASELHAKP--------------KYSSI---VIDVNKNQMTGFKQDE 73
           M ++LF  ++++S+   ++A+P              K S +   V D+   +     QDE
Sbjct: 1   MKRVLFFFLLILSIHF-INAQPLSQRLDALLHEEVLKTSEVGIAVFDLTTGKSVYRYQDE 59

Query: 74  PRY-PASLTKMMTLYIIFEYLQSKKLHLNT 102
             Y PAS+ K++T       L +    ++T
Sbjct: 60  KLYRPASVEKIITSVTALAQLGA-DYTMDT 88


>gi|160858188|emb|CAI30651.2| beta-lactamase SHV-62 [Klebsiella pneumoniae]
 gi|262477945|gb|ACY68242.1| beta-lactamase blaSHV-62 [Klebsiella pneumoniae]
          Length = 286

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 63/202 (31%), Gaps = 39/202 (19%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAK----------PKYSSIVIDVNKNQMT-GFKQDEP 74
           R I+L    L  ++ +   AS    +           +   I +D+   +    ++ DE 
Sbjct: 2   RYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADER 61

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQI-----------PVSKTAATQNPSKLYLKEK 123
               S  K++    +   + +    L  +I           PVS+          YL + 
Sbjct: 62  FPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEK---------YLADG 112

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNASG 181
              T  +   A IT S N  +      + G      F   + +   ++    T    A  
Sbjct: 113 --MTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALP 170

Query: 182 LHDKNQITTARDQAILGILLRK 203
              ++  T A     +   LRK
Sbjct: 171 GDARDTTTPA----SMAATLRK 188


>gi|330973395|gb|EGH73461.1| peptidoglycan glycosyltransferase [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 580

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 34/125 (27%), Gaps = 30/125 (24%)

Query: 53  KYSSIVIDVNKNQMTG------FKQDEPR----------------YPASLTK-M-MTLYI 88
             S +++DV   ++        +  +  R                 P S  K + MT   
Sbjct: 243 AGSMVIMDVKTGEVLAMVNQPTYNPNNRRTMVPAAMRNRAIIDVFEPGSTMKPISMTA-- 300

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
               L S +     ++ V           +    KT          ++  S+N   +   
Sbjct: 301 ---ALDSGRWKPTDKVEVYPGTLQIGKYTIRDVTKTEGPILDL-TGILINSSNVGMSKVA 356

Query: 149 EFISG 153
             + G
Sbjct: 357 FDVGG 361


>gi|312862915|ref|ZP_07723155.1| conserved hypothetical protein [Streptococcus vestibularis F0396]
 gi|311101775|gb|EFQ59978.1| conserved hypothetical protein [Streptococcus vestibularis F0396]
          Length = 80

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 55 SSIVIDVNKNQMTGFKQ-DEPRYPAS 79
          SS++ID N   +      DE R PAS
Sbjct: 46 SSLLIDANTGDILWQDNIDEVRDPAS 71


>gi|307271078|ref|ZP_07552361.1| putative beta-lactamase [Enterococcus faecalis TX4248]
 gi|307275022|ref|ZP_07556185.1| putative beta-lactamase [Enterococcus faecalis TX2134]
 gi|306508470|gb|EFM77577.1| putative beta-lactamase [Enterococcus faecalis TX2134]
 gi|306512576|gb|EFM81225.1| putative beta-lactamase [Enterococcus faecalis TX4248]
 gi|315166788|gb|EFU10805.1| putative beta-lactamase [Enterococcus faecalis TX1341]
          Length = 295

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 9/122 (7%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKL 98
           ++++   E       S +  D+   +          Y AS  K+ +T+ +  + + S + 
Sbjct: 51  LLVASVKEFEGTVGISYL--DLETGEQRSVNGQHEFYTASTIKVPLTMLVA-DTVASGQK 107

Query: 99  HLNTQIPVSKTAATQNPSKL---YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                IP +     +  + +    ++    +  +      IT S N       + + G  
Sbjct: 108 KWTDLIPYNAEEDYEEGTGIIAYNIQP--EYPLKTLQEYAITYSDNIAKNMLYDTLGGDA 165

Query: 156 KK 157
           K 
Sbjct: 166 KA 167


>gi|307278504|ref|ZP_07559578.1| putative beta-lactamase [Enterococcus faecalis TX0860]
 gi|306504847|gb|EFM74043.1| putative beta-lactamase [Enterococcus faecalis TX0860]
          Length = 295

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 9/122 (7%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKL 98
           ++++   E       S +  D+   +          Y AS  K+ +T+ +  + + S + 
Sbjct: 51  LLVASVKEFEGTVGISYL--DLETGEQRSVNGQHEFYTASTIKVPLTMLVA-DTVASGQK 107

Query: 99  HLNTQIPVSKTAATQNPSKL---YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                IP +     +  + +    ++    +  +      IT S N       + + G  
Sbjct: 108 KWTDLIPYNAEEDYEEGTGIIAYNIQP--EYPLKTLQEYAITYSDNIAKNMLYDTLGGDA 165

Query: 156 KK 157
           K 
Sbjct: 166 KA 167


>gi|257082603|ref|ZP_05576964.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|257419238|ref|ZP_05596232.1| predicted protein [Enterococcus faecalis T11]
 gi|256990633|gb|EEU77935.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|257161066|gb|EEU91026.1| predicted protein [Enterococcus faecalis T11]
 gi|315172372|gb|EFU16389.1| putative beta-lactamase [Enterococcus faecalis TX1346]
 gi|315575923|gb|EFU88114.1| putative beta-lactamase [Enterococcus faecalis TX0309B]
 gi|315580576|gb|EFU92767.1| putative beta-lactamase [Enterococcus faecalis TX0309A]
          Length = 293

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 9/122 (7%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKL 98
           ++++   E       S +  D+   +          Y AS  K+ +T+ +  + + S + 
Sbjct: 51  LLVASVKEFEGTVGISYL--DLETGEQRSVNGQHEFYTASTIKVPLTMLVA-DTVASGQK 107

Query: 99  HLNTQIPVSKTAATQNPSKL---YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                IP +     +  + +    ++    +  +      IT S N       + + G  
Sbjct: 108 KWTDLIPYNAEEDYEEGTGIIAYNIQP--EYPLKTLQEYAITYSDNIAKNMLYDTLGGDA 165

Query: 156 KK 157
           K 
Sbjct: 166 KA 167


>gi|229545886|ref|ZP_04434611.1| beta-lactamase [Enterococcus faecalis TX1322]
 gi|307291493|ref|ZP_07571376.1| putative beta-lactamase [Enterococcus faecalis TX0411]
 gi|229308954|gb|EEN74941.1| beta-lactamase [Enterococcus faecalis TX1322]
 gi|306497453|gb|EFM66987.1| putative beta-lactamase [Enterococcus faecalis TX0411]
 gi|315029579|gb|EFT41511.1| putative beta-lactamase [Enterococcus faecalis TX4000]
          Length = 295

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 9/122 (7%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKL 98
           ++++   E       S +  D+   +          Y AS  K+ +T+ +  + + S + 
Sbjct: 51  LLVASVKEFEGTVGISYL--DLETGEQRSVNGQHEFYTASTIKVPLTMLVA-DTVASGQK 107

Query: 99  HLNTQIPVSKTAATQNPSKL---YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                IP +     +  + +    ++    +  +      IT S N       + + G  
Sbjct: 108 KWTDLIPYNAEEDYEEGTGIIAYNIQP--EYPLKTLQEYAITYSDNIAKNMLYDTLGGDA 165

Query: 156 KK 157
           K 
Sbjct: 166 KA 167


>gi|229550077|ref|ZP_04438802.1| beta-lactamase [Enterococcus faecalis ATCC 29200]
 gi|255972855|ref|ZP_05423441.1| predicted protein [Enterococcus faecalis T1]
 gi|257089824|ref|ZP_05584185.1| predicted protein [Enterococcus faecalis CH188]
 gi|257422679|ref|ZP_05599669.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|312903246|ref|ZP_07762426.1| putative beta-lactamase [Enterococcus faecalis TX0635]
 gi|312951432|ref|ZP_07770329.1| putative beta-lactamase [Enterococcus faecalis TX0102]
 gi|229304781|gb|EEN70777.1| beta-lactamase [Enterococcus faecalis ATCC 29200]
 gi|255963873|gb|EET96349.1| predicted protein [Enterococcus faecalis T1]
 gi|256998636|gb|EEU85156.1| predicted protein [Enterococcus faecalis CH188]
 gi|257164503|gb|EEU94463.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|310630588|gb|EFQ13871.1| putative beta-lactamase [Enterococcus faecalis TX0102]
 gi|310633122|gb|EFQ16405.1| putative beta-lactamase [Enterococcus faecalis TX0635]
 gi|315033908|gb|EFT45840.1| putative beta-lactamase [Enterococcus faecalis TX0017]
 gi|315036918|gb|EFT48850.1| putative beta-lactamase [Enterococcus faecalis TX0027]
 gi|315144477|gb|EFT88493.1| putative beta-lactamase [Enterococcus faecalis TX2141]
 gi|315147210|gb|EFT91226.1| putative beta-lactamase [Enterococcus faecalis TX4244]
 gi|315152544|gb|EFT96560.1| putative beta-lactamase [Enterococcus faecalis TX0031]
 gi|315155823|gb|EFT99839.1| putative beta-lactamase [Enterococcus faecalis TX0043]
 gi|315160506|gb|EFU04523.1| putative beta-lactamase [Enterococcus faecalis TX0645]
 gi|315169665|gb|EFU13682.1| putative beta-lactamase [Enterococcus faecalis TX1342]
 gi|315577595|gb|EFU89786.1| putative beta-lactamase [Enterococcus faecalis TX0630]
 gi|323480665|gb|ADX80104.1| conserved hypothetical protein [Enterococcus faecalis 62]
 gi|329571375|gb|EGG53062.1| hypothetical protein HMPREF9520_02756 [Enterococcus faecalis
           TX1467]
          Length = 295

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 9/122 (7%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKL 98
           ++++   E       S +  D+   +          Y AS  K+ +T+ +  + + S + 
Sbjct: 51  LLVASVKEFEGTVGISYL--DLETGEQRSVNGQHEFYTASTIKVPLTMLVA-DTVASGQK 107

Query: 99  HLNTQIPVSKTAATQNPSKL---YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                IP +     +  + +    ++    +  +      IT S N       + + G  
Sbjct: 108 KWTDLIPYNAEEDYEEGTGIIAYNIQP--EYPLKTLQEYAITYSDNIAKNMLYDTLGGDA 165

Query: 156 KK 157
           K 
Sbjct: 166 KA 167


>gi|157368881|ref|YP_001476870.1| beta-lactam binding protein AmpH [Serratia proteamaculans 568]
 gi|157320645|gb|ABV39742.1| beta-lactamase [Serratia proteamaculans 568]
          Length = 380

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 18/35 (51%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           + D     AS+TK+MT  ++ +     ++ LN  +
Sbjct: 76  RPDSLIRIASITKLMTSEVMVKMAAEGRVKLNDPL 110


>gi|315612150|ref|ZP_07887065.1| beta-lactamase [Streptococcus sanguinis ATCC 49296]
 gi|315315711|gb|EFU63748.1| beta-lactamase [Streptococcus sanguinis ATCC 49296]
          Length = 422

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 38/109 (34%), Gaps = 13/109 (11%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           ++  +  G  +D   Y AS+ K+   Y+    + +   +  L++         +   S  
Sbjct: 207 LSTGKEAGVNEDSKLYAASILKL--AYLYYAQDKINQGEYTLDSSFKYISEVNSFPGSYK 264

Query: 119 YLKEKT--------YFTTEQGILALITRSANDVSTAFGEFISG-SEKKF 158
                +         ++ +Q I  +   S N      G +++  S+  F
Sbjct: 265 PEGSGSLPKKEDNKEYSLQQLITKVTKESDNVAHNILGYYVTNQSDGAF 313


>gi|300790614|ref|YP_003770905.1| beta-lactamase class C [Amycolatopsis mediterranei U32]
 gi|299800128|gb|ADJ50503.1| beta-lactamase class C [Amycolatopsis mediterranei U32]
          Length = 576

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 18/35 (51%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           K D     AS++K+ T   + + ++  +  ++T +
Sbjct: 120 KNDTIFDMASISKLFTSIAVLQLIERGQFTIDTPV 154


>gi|303324167|ref|XP_003072071.1| hypothetical protein CPC735_012440 [Coccidioides posadasii C735
           delta SOWgp]
 gi|240111781|gb|EER29926.1| hypothetical protein CPC735_012440 [Coccidioides posadasii C735
           delta SOWgp]
          Length = 87

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQI 104
           SLTK+MT   + + ++   + L+  +
Sbjct: 4   SLTKLMTSIAVLQCVERGLIQLDDDV 29


>gi|155674975|gb|ABU24823.1| beta-lactamase PER-1 [Acinetobacter baumannii]
          Length = 307

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 76/229 (33%), Gaps = 27/229 (11%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK--LYLKEKTYFT--T 128
           E     S+ K+    ++   +   KL LN  + V++    QN     +   +   F+   
Sbjct: 64  EKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFSVPV 123

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK---NASGLHDK 185
           +Q +   ++ S N       E + G        + +  + +G++ T            D+
Sbjct: 124 QQLLQYSVSHSDNVACDLLFELVGGP-----AALHDYIQSMGIKETAVVANEAQMHADDQ 178

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRK---FRYRNRIITNHNKLLNKMH------- 235
            Q             + K F Q  +     +   +++     T   +L   +        
Sbjct: 179 VQYQNWTSM-KGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAH 237

Query: 236 --NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ-ERDQKAL 281
                GIK G T  +  ++   L     P++  V    +++  R  +A+
Sbjct: 238 KTGTSGIKAGKT-AATNDLGIILLPDGRPLLVAVFVKDSAESSRTNEAI 285


>gi|311895702|dbj|BAJ28110.1| putative D-alanyl-D-alanine carboxypeptidase precursor
           [Kitasatospora setae KM-6054]
          Length = 529

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
           +A    A  +    V+D    Q+   +Q +    PAS  K +T     + L
Sbjct: 51  LADSRLANAQTGVEVLDAATGQVLYARQPQALLTPASTLKTVTTAAALDLL 101


>gi|320095486|ref|ZP_08027157.1| hypothetical protein HMPREF9005_1769 [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319977582|gb|EFW09254.1| hypothetical protein HMPREF9005_1769 [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 449

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 57  IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQS 95
           +V+D    + +          PAS+TK +T      +L  
Sbjct: 84  LVVDGTTGEELLDAAAGTAHMPASVTKTLTALTALTHLDP 123


>gi|294669443|ref|ZP_06734520.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Neisseria elongata subsp. glycolytica ATCC 29315]
 gi|291308647|gb|EFE49890.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Neisseria elongata subsp. glycolytica ATCC 29315]
          Length = 470

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 51 KPKYSSIVI-DVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYL 93
          +P+ +++ + ++   Q+T     D    PAS  K++T +     L
Sbjct: 29 RPEEAAVYVQNLRTGQITAAHRADASVNPASTMKLVTAFAALHAL 73


>gi|170780435|ref|YP_001715979.1| truncated beta-lactamase BlaZ [Staphylococcus aureus]
 gi|169264776|dbj|BAG12269.1| truncated beta-lactamase BlaZ [Staphylococcus aureus]
          Length = 159

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 21/154 (13%)

Query: 31  MGKILFLSIIMISMAS----ELHAK----------PKYSSIVIDVNKNQMTGFKQDEPRY 76
           M K++FL +I + +++      HAK                 +D    +   F  D+   
Sbjct: 1   MKKLIFLIVIALVLSACNSNSSHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS +K +   I+ E +   K  LN ++ ++K         L        T ++ I A +
Sbjct: 61  YASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITLKELIEASM 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           T S N  +    + I G        +  + K++G
Sbjct: 119 TYSDNTANNKIIKEIGG-----IKKVKQRLKELG 147


>gi|167763974|ref|ZP_02436101.1| hypothetical protein BACSTE_02357 [Bacteroides stercoris ATCC
          43183]
 gi|167698090|gb|EDS14669.1| hypothetical protein BACSTE_02357 [Bacteroides stercoris ATCC
          43183]
          Length = 482

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 21/86 (24%)

Query: 26 RNIQLMGKILFLSIIMISMASE--------------------LHAKPKYSSIVIDVNKNQ 65
          R   L   +L L++I   + ++                    L A    S    D+  N+
Sbjct: 8  RKYCLFPIVLILTLIPCVLPAQGISPETNSLSSQLDTLIKYQLPAGSNVSVSAYDLTANK 67

Query: 66 MTG-FKQDEPRYPASLTKMMTLYIIF 90
          +   ++ D+   PAS  K++T     
Sbjct: 68 VLYDYQADKLSRPASTMKLLTTITAL 93


>gi|302868686|ref|YP_003837323.1| beta-lactamase [Micromonospora aurantiaca ATCC 27029]
 gi|302571545|gb|ADL47747.1| beta-lactamase [Micromonospora aurantiaca ATCC 27029]
          Length = 436

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQI 104
           S+TK MT  ++ +   + +L L+  +
Sbjct: 59  SITKTMTAVLVMQQRDAGRLALDDPL 84


>gi|1403365|emb|CAA90891.1| BRO-2 [Moraxella catarrhalis ATCC 43617]
          Length = 314

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 71/224 (31%), Gaps = 35/224 (15%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYII---FEYLQSKKLHLNTQIPV--SKTAATQNP 115
            +  +++  + +E     S  K    +I       +  +KL LN +I +  S        
Sbjct: 73  ADNGELSSHRGNEYFPVNSTIK---AFIASHILLLVDKEKLDLNEKIIIKESDLIEYSPV 129

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG----- 170
            K Y  E    +  +   A IT S N  +    + I G    F    +   K+IG     
Sbjct: 130 CKKYFDENKPISISELCEATITLSDNGSANILLDKIGG-LTAF----NQFLKEIGADMVL 184

Query: 171 ------MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII 224
                 +  + Y   S        T +    I+G +L     +    + I      +++ 
Sbjct: 185 ANNEPLLNRSHYGETSDTAKPIPYTKSLKALIVGNILSNQSKEQLITWLI-----NDKVA 239

Query: 225 TNHNKLLNKM---HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            N   LL K    +   G KTG    S   I       + P   
Sbjct: 240 DN---LLRKYLPKNWRIGDKTGTGSESKNIIAVIWNENNKPYFI 280


>gi|256367787|ref|YP_003108344.1| CTX-M-15 [Escherichia coli]
 gi|302595421|ref|YP_003829283.1| beta-lactamase [Escherichia coli]
 gi|302595555|ref|YP_003829173.1| beta-lactamase [Escherichia coli]
 gi|228480724|gb|ACQ42051.1| CTX-M-15 [Escherichia coli]
 gi|302310196|gb|ADL14067.1| CTX-M-15 [Escherichia coli]
 gi|302310309|gb|ADL14177.1| CTX-M-15 [Escherichia coli]
          Length = 311

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 76  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 134

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 135 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 185


>gi|149185476|ref|ZP_01863792.1| Beta-lactamase class A [Erythrobacter sp. SD-21]
 gi|148830696|gb|EDL49131.1| Beta-lactamase class A [Erythrobacter sp. SD-21]
          Length = 339

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 46/115 (40%), Gaps = 17/115 (14%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
            ID++  Q  G   D+    AS +K+    +    + + K  L+++             +
Sbjct: 75  AIDLSTGQEIGVLADQRFPMASTSKVAIAAVYLAGVDAGKWTLSSEW------------R 122

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
           L      Y + +Q +  +I++S N  + A  + + G        ++   +K G++
Sbjct: 123 LPRPGGAYLSAQQHLDLMISKSCNACTDALLDAVGGPRA-----VNAWMRKAGIE 172


>gi|319425254|gb|ADV53328.1| beta-lactamase [Shewanella putrefaciens 200]
          Length = 399

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           ++++ K +  G  QD     ASL+K +T  ++ + L   KL L   +
Sbjct: 86  LLELQKGE--GINQDSRFVMASLSKQITATLVLQALDVGKLDLTQTL 130


>gi|172065285|ref|YP_001815997.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria
           MC40-6]
 gi|171997527|gb|ACB68444.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria
           MC40-6]
          Length = 420

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 40/130 (30%), Gaps = 35/130 (26%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNK-NQMTGFKQDEPRYPA------------------ 78
           S+     A    A+P+  +++ D      +   +     + A                  
Sbjct: 42  SVSSGEPAFATEARPQIDALLADTMTPGAVVYVQSPHGNWLASFGTAVRGTNTPIPTNAH 101

Query: 79  ----SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL- 133
               S+TK  T  +I + +Q  KLHL   +  S+  A               T EQ +  
Sbjct: 102 FRVGSVTKTWTGTVILQLVQEGKLHLTDHV--SQYVANVP-------NGDSITVEQLLTM 152

Query: 134 --ALITRSAN 141
              L   S N
Sbjct: 153 RSGLYNYSTN 162


>gi|160900006|ref|YP_001565588.1| beta-lactamase [Delftia acidovorans SPH-1]
 gi|160365590|gb|ABX37203.1| Beta-lactamase [Delftia acidovorans SPH-1]
          Length = 303

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 32/101 (31%), Gaps = 2/101 (1%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV--SKTAATQNP 115
           V++         + DE     S  K++    + + +Q     L+ ++    S+       
Sbjct: 56  VLEAESGASVDHRGDERFVMCSTFKLLLAAQVLDRVQQGDERLSRRVHYASSRLVPYSPA 115

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
           S     +    T  +   A +  S N  +    +   G + 
Sbjct: 116 SGPRAGDGGGMTISELCEAAVVLSDNTAANLLLDASGGPQA 156


>gi|1403363|emb|CAA90890.1| BRO-1 [Moraxella catarrhalis]
 gi|39930303|dbj|BAD05047.1| BRO-1 [Moraxella lacunata]
          Length = 314

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 71/224 (31%), Gaps = 35/224 (15%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYII---FEYLQSKKLHLNTQIPV--SKTAATQNP 115
            +  +++  + +E     S  K    +I       +  +KL LN +I +  S        
Sbjct: 73  ADNGELSSHRGNEYFPVNSTIK---AFIASHILLLVDKEKLDLNEKIIIKESDLIEYSPV 129

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG----- 170
            K Y  E    +  +   A IT S N  +    + I G    F    +   K+IG     
Sbjct: 130 CKKYFDENKPISISELCEATITLSDNGSANILLDKIGG-LTAF----NQFLKEIGADMVL 184

Query: 171 ------MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII 224
                 +  + Y   S        T +    I+G +L     +    + I      +++ 
Sbjct: 185 ANNEPLLNRSHYGETSDTAKPIPYTKSLKALIVGNILSNQSKEQLITWLI-----NDKVA 239

Query: 225 TNHNKLLNKM---HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
            N   LL K    +   G KTG    S   I       + P   
Sbjct: 240 DN---LLRKYLPKNWRIGDKTGTGSESKNIIAVIWNENNKPYFI 280


>gi|288963252|gb|ADC79147.1| beta-lactamase [uncultured sludge bacterium]
          Length = 506

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL- 118
           D+   +      D     AS+TK +T   +   +   K+ L+   PVSK       +KL 
Sbjct: 190 DLASGRPMAR--DTVFAIASMTKPITAAALMILVDEGKVQLDD--PVSKYIPAFKETKLA 245

Query: 119 -YLKEKTYFTTEQG---ILALITRSANDVSTA-FGEFISGSEKKF 158
                +   T          L++   N  + A   E ++ SE  F
Sbjct: 246 GGKAPQREITVRDCLTHTNGLVSDQQNVGTLANTAETLARSELAF 290


>gi|330719372|ref|ZP_08313972.1| penicillin-binding protein, putative [Leuconostoc fallax KCTC 3537]
          Length = 388

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           ASL K +T  +I + ++  KL L+T +
Sbjct: 133 ASLQKSLTALMIMQQIEKGKLSLDTPV 159


>gi|307273286|ref|ZP_07554532.1| putative beta-lactamase [Enterococcus faecalis TX0855]
 gi|306510271|gb|EFM79295.1| putative beta-lactamase [Enterococcus faecalis TX0855]
          Length = 293

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 9/122 (7%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKL 98
           ++++   E       S +  D+   +          Y AS  K+ +T+ +  + + S + 
Sbjct: 51  LLVASVKEFEGTVGISYL--DLETGEQRSVNGQHEFYTASTIKVPLTMLVA-DTVASGQK 107

Query: 99  HLNTQIPVSKTAATQNPSKL---YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE 155
                IP +     +  + +    ++    +  +      IT S N       + + G  
Sbjct: 108 KWTDLIPYNAEEDYEEGTGIIAYNIQP--KYPLKTLQEYAITYSDNIAKNMLYDTLDGDA 165

Query: 156 KK 157
           K 
Sbjct: 166 KA 167


>gi|281335956|gb|ADA62535.1| CTX-M-1 group beta-lactamase [synthetic construct]
          Length = 291

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|330957976|gb|EGH58236.1| peptidoglycan glycosyltransferase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 576

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 34/125 (27%), Gaps = 30/125 (24%)

Query: 53  KYSSIVIDVNKNQMTG------FKQDEPR----------------YPASLTK-M-MTLYI 88
             S +++DV   ++        +  +  R                 P S  K + MT   
Sbjct: 244 AGSMVIMDVKTGEVLAMVNQPTYNPNNRRTMVPAAMRNRAIIDVFEPGSTMKPISMTA-- 301

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
               L S +     ++ V           +    KT          ++  S+N   +   
Sbjct: 302 ---ALDSGRWKPTDKVEVYPGTLQIGKYTIRDVTKTEGPILDL-TGILINSSNVGMSKVA 357

Query: 149 EFISG 153
             + G
Sbjct: 358 FDVGG 362


>gi|325180476|emb|CCA14882.1| LeucyltRNA Synthetase (Cterminal region) LeucyltRNA Synthetase
           (Central region) LeucyltRNA Synth putative [Albugo
           laibachii Nc14]
          Length = 1089

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 16/109 (14%)

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210
           +S S+  F  + +  A++ G   T +  A      +    +RD   + IL      ++ K
Sbjct: 730 MSKSKGNFLTIRNC-AEEFGADATRFACADAGDSMDDANFSRDTCNMAILRLTTEEEWIK 788

Query: 211 YFSIRK-------FRYRNRIITNH-NKLL-------NKMHNIDGIKTGY 244
                        + + +R++ N  N L+       +++   +G+ TGY
Sbjct: 789 KIKEESLSLRQGDYNFNDRMLANQMNDLIIKTKSFFDRLQWREGLHTGY 837


>gi|302185275|ref|ZP_07261948.1| peptidoglycan glycosyltransferase [Pseudomonas syringae pv.
           syringae 642]
          Length = 575

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 34/125 (27%), Gaps = 30/125 (24%)

Query: 53  KYSSIVIDVNKNQMTG------FKQDEPR----------------YPASLTK-M-MTLYI 88
             S +++DV   ++        +  +  R                 P S  K + MT   
Sbjct: 243 AGSMVIMDVKTGEVLAMVNQPTYNPNNRRTMVPAAMRNRAIIDVFEPGSTMKPISMTA-- 300

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
               L S +     ++ V           +    KT          ++  S+N   +   
Sbjct: 301 ---ALDSGRWKPTDKVEVYPGTLQIGKYTIRDVTKTEGPILDL-TGILINSSNVGMSKVA 356

Query: 149 EFISG 153
             + G
Sbjct: 357 FDVGG 361


>gi|294630438|ref|ZP_06708998.1| beta-lactamase [Streptomyces sp. e14]
 gi|292833771|gb|EFF92120.1| beta-lactamase [Streptomyces sp. e14]
          Length = 392

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 8/74 (10%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           V DV   +    + D  +   S++K  T   + + ++  K+ L+  +          P  
Sbjct: 33  VADVATGRPV--RADMRQRVGSISKTFTAVAVLQQVERGKVRLDDPVD------RYLPGL 84

Query: 118 LYLKEKTYFTTEQG 131
           +  +     T    
Sbjct: 85  IPGERGHRITVRML 98


>gi|282878441|ref|ZP_06287227.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Prevotella buccalis ATCC 35310]
 gi|281299427|gb|EFA91810.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Prevotella buccalis ATCC 35310]
          Length = 420

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 57  IVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL 93
           +V D+  + +     + +   PAS  K++T     + L
Sbjct: 79  MVYDLTADSVIYAHNERQLMRPASTMKVVTAITALDKL 116


>gi|224760695|gb|ACN62388.1| beta-lactamase OXY-2-9 [Klebsiella oxytoca]
          Length = 290

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 47/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 55  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + ++  ++
Sbjct: 112 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDETFRL 164


>gi|219920909|emb|CAQ76632.1| beta-lactamase [Klebsiella oxytoca]
          Length = 274

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 45/115 (39%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 55  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T      A +  S N        ++ G EK   FA  + +   ++
Sbjct: 112 EKHLQSG--MTLADLSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 164


>gi|157956208|gb|ABW06473.1| extended-spectrum beta-lactamase CTX-M-15 [Escherichia coli]
          Length = 251

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 37  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 95

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 96  HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 146


>gi|223868933|gb|ACN22483.1| extended spectrum beta-lactamase [Providencia rettgeri]
          Length = 308

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 76/229 (33%), Gaps = 27/229 (11%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN----PSKLYLKEKTYFTT 128
           E     S+ K+    ++   +   KL LN  + V++    QN      K Y  ++     
Sbjct: 65  EKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFSVPV 124

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK---NASGLHDK 185
           +Q +   ++ S N       E + G        + +  + +G++ T            D+
Sbjct: 125 QQLLQYSVSHSDNVACDLLFELVGGP-----AALHDYIQSMGIKETAVVANEAQMHADDQ 179

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRK---FRYRNRIITNHNKLLNKMH------- 235
            Q             + K F Q  +     +   +++     T   +L   +        
Sbjct: 180 VQYQNWTSM-KGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAH 238

Query: 236 --NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ-ERDQKAL 281
                GIK G T  +  ++   L     P++  V    +++  R  +A+
Sbjct: 239 KTGTSGIKAGKT-AATNDLGIILLPDGRPLLVAVFVKDSAESSRTNEAI 286


>gi|281336002|gb|ADA62558.1| CTX-M-1 group beta-lactamase [synthetic construct]
          Length = 291

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|281335982|gb|ADA62548.1| CTX-M-36-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|229819194|ref|YP_002880720.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
           anine-endopeptidase [Beutenbergia cavernae DSM 12333]
 gi|229565107|gb|ACQ78958.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
           anine-endopeptidase [Beutenbergia cavernae DSM 12333]
          Length = 464

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 57  IVIDVNKNQMTGFKQDEP-RYPASLTKMMTL 86
           +V DV   ++      E  R PAS  K++T 
Sbjct: 95  VVADVATGEVLVSADAETGRAPASTLKLLTA 125


>gi|157956222|gb|ABW06480.1| extended-spectrum beta-lactamase CTX-M-15 [Klebsiella pneumoniae]
          Length = 240

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 26  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 84

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 85  HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 135


>gi|157956216|gb|ABW06477.1| extended-spectrum beta-lactamase CTX-M-15 [Enterobacter gergoviae]
          Length = 242

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 35  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 93

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 94  HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 144


>gi|157956210|gb|ABW06474.1| extended-spectrum beta-lactamase CTX-M-15 [Escherichia coli]
          Length = 244

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 37  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 95

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 96  HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 146


>gi|584848|sp|P37321|BLE1_PSEAE RecName: Full=Extended-spectrum beta-lactamase PER-1; Flags:
           Precursor
 gi|396145|emb|CAA79968.1| extended-spectrum beta-lactamase PER-1 [Pseudomonas aeruginosa]
 gi|48596235|emb|CAF18433.1| extended-spectrum beta-lactamase PER-1 [Pseudomonas aeruginosa]
 gi|58003741|gb|AAW62294.1| PER-1 [Pseudomonas aeruginosa]
 gi|60100164|gb|AAX13245.1| PER-1 [Pseudomonas aeruginosa]
 gi|71361069|emb|CAF29487.1| extended-spectrum beta-lactamase PER-1 [Alcaligenes faecalis]
 gi|146216708|gb|ABQ10556.1| extended-spectrum beta-lactamase PER-1 [Acinetobacter baumannii]
 gi|295002611|gb|ADF59064.1| extended-spectrum beta-lactamase PER-1 [Acinetobacter baumannii]
          Length = 308

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 76/229 (33%), Gaps = 27/229 (11%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK--LYLKEKTYFT--T 128
           E     S+ K+    ++   +   KL LN  + V++    QN     +   +   F+   
Sbjct: 65  EKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFSVPV 124

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK---NASGLHDK 185
           +Q +   ++ S N       E + G        + +  + +G++ T            D+
Sbjct: 125 QQLLQYSVSHSDNVACDLLFELVGGP-----AALHDYIQSMGIKETAVVANEAQMHADDQ 179

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRK---FRYRNRIITNHNKLLNKMH------- 235
            Q             + K F Q  +     +   +++     T   +L   +        
Sbjct: 180 VQYQNWTSM-KGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAH 238

Query: 236 --NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ-ERDQKAL 281
                GIK G T  +  ++   L     P++  V    +++  R  +A+
Sbjct: 239 KTGTSGIKAGKT-AATNDLGIILLPDGRPLLVAVFVKDSAESSRTNEAI 286


>gi|297159325|gb|ADI09037.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Streptomyces bingchenggensis BCW-1]
          Length = 498

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 59/203 (29%), Gaps = 29/203 (14%)

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS---GSEKKFAIL 161
           P S  AA        L           +   +T S ND++ A     +   G    F   
Sbjct: 300 PQSVKAAKDGKKARPLATVRSQPLSSLVERALTNSDNDIAEALARQTAIAAGEPASFDGA 359

Query: 162 MSNKAKKIG-----MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS--- 213
                 ++      +      + SGL   + ++ A    +L      + P+     +   
Sbjct: 360 GRAVMDRLNKLRLPLSGARIVDGSGLDRADHVSAALLAQVLVRAADPDHPELRSVLTGLP 419

Query: 214 IRKFRYRNRIITNHNKLLNKM------HNIDGIKTGYTRNSGFNIVTSLRYKDDPI--VA 265
           +  F            L  +         +   KTG        +  ++   D  +   A
Sbjct: 420 VAGFTGT---------LRGRYAQEAVGRGVVRAKTGTLTGVN-TLAGTVVDADGRLLVFA 469

Query: 266 VVMGMPTSQERDQKALELITSFL 288
            +    T  +  Q+AL+ + S L
Sbjct: 470 FMTNGTTDPQGAQRALDRMASAL 492



 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 58  VIDVNKN-QMTGFKQDEPRYPASLTKMMTLYIIFEYL-QSKKLHLNTQIP 105
           V+D     Q+ G + D    PAS+ K+ T       L    ++     +P
Sbjct: 117 VVDSATGRQLYGAQADTQAVPASIIKLATGIAALSALGPDHRIETTVVVP 166


>gi|255035613|ref|YP_003086234.1| beta-lactamase [Dyadobacter fermentans DSM 18053]
 gi|254948369|gb|ACT93069.1| beta-lactamase [Dyadobacter fermentans DSM 18053]
          Length = 446

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 30/128 (23%)

Query: 55  SSIVIDVNKNQMTGFK------------QDEPRY--PASLTKMMTLYIIFEYLQSKKLHL 100
            SI+I   + ++   K             D       ASLTK  T  ++ + +++ KL L
Sbjct: 42  GSILI-AQRGEILLRKGYSYKNSQNKTLNDAKTVYQIASLTKSFTATLVLKLVETDKLAL 100

Query: 101 NTQIPVSKTAATQNPSKLY---LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
             +I             ++   + +    T EQ +      S ND  T    +    E++
Sbjct: 101 TDRI------------AMFYPQIPKSDSITIEQLLSHTSGISDNDSLTKHKTYKGSDEEQ 148

Query: 158 FAILMSNK 165
           F   ++++
Sbjct: 149 FIATLTDR 156


>gi|157956224|gb|ABW06481.1| extended-spectrum beta-lactamase CTX-M-15 [Klebsiella pneumoniae]
          Length = 248

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 34  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 92

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 93  HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 143


>gi|157956220|gb|ABW06479.1| extended-spectrum beta-lactamase CTX-M-15 [Escherichia coli]
          Length = 235

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 32  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 90

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 91  HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 141


>gi|18390031|gb|AAL68824.1|AF462634_1 extended-spectrum beta-lactamase CTX-M-3 [Enterobacter cloacae]
          Length = 253

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 39  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 97

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 98  HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 148


>gi|66047335|ref|YP_237176.1| peptidoglycan glycosyltransferase [Pseudomonas syringae pv.
           syringae B728a]
 gi|63258042|gb|AAY39138.1| Peptidoglycan glycosyltransferase [Pseudomonas syringae pv.
           syringae B728a]
 gi|330938037|gb|EGH41809.1| peptidoglycan glycosyltransferase [Pseudomonas syringae pv. pisi
           str. 1704B]
 gi|330950230|gb|EGH50490.1| peptidoglycan glycosyltransferase [Pseudomonas syringae Cit 7]
 gi|330981223|gb|EGH79326.1| peptidoglycan glycosyltransferase [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 576

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 34/125 (27%), Gaps = 30/125 (24%)

Query: 53  KYSSIVIDVNKNQMTG------FKQDEPR----------------YPASLTK-M-MTLYI 88
             S +++DV   ++        +  +  R                 P S  K + MT   
Sbjct: 244 AGSMVIMDVKTGEVLAMVNQPTYNPNNRRTMVPAAMRNRAIIDVFEPGSTMKPISMTA-- 301

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
               L S +     ++ V           +    KT          ++  S+N   +   
Sbjct: 302 ---ALDSGRWKPTDKVEVYPGTLQIGKYTIRDVTKTEGPILDL-TGILINSSNVGMSKVA 357

Query: 149 EFISG 153
             + G
Sbjct: 358 FDVGG 362


>gi|46401610|dbj|BAD16611.1| beta-lactamase CTX-M-36 [Escherichia coli]
 gi|281335902|gb|ADA62508.1| CTX-M-36 beta-lactamase [synthetic construct]
          Length = 291

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|5915793|sp|Q59517|BLAF_MYCFO RecName: Full=Beta-lactamase; AltName: Full=Penicillinase; Flags:
           Precursor
 gi|497608|gb|AAA19882.1| beta-lactamase [Mycobacterium fortuitum]
          Length = 294

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
           + +  +  ++ L+ ++ V   A   N      +     T  +   A + RS N  +    
Sbjct: 85  VLQMAEHGEISLDNRVFVDADALVPNSPVTEARAGAEMTLAELCQAALQRSDNTAANLLL 144

Query: 149 EFISG--SEKKFAI 160
           + I G  +   FA 
Sbjct: 145 KTIGGPAAVTAFAR 158


>gi|294140853|ref|YP_003556831.1| penicillin-binding protein 4 [Shewanella violacea DSS12]
 gi|293327322|dbj|BAJ02053.1| penicillin-binding protein 4 [Shewanella violacea DSS12]
          Length = 486

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 11/68 (16%)

Query: 30 LMGKILFLSIIMISMASELH-------AKPKYS--SIVI-DVNKNQMTGFKQ-DEPRYPA 78
          L+   L LS + +    + +        KP +S  +I+  ++    +   +  D    PA
Sbjct: 4  LVNACLLLSFLSLPALGDANFNHLFSSIKPPHSHTAIIATNLVTGDIIFEQNPDTLLLPA 63

Query: 79 SLTKMMTL 86
          S  K++T 
Sbjct: 64 STMKLLTA 71


>gi|196231839|ref|ZP_03130695.1| beta-lactamase [Chthoniobacter flavus Ellin428]
 gi|196223961|gb|EDY18475.1| beta-lactamase [Chthoniobacter flavus Ellin428]
          Length = 423

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 16/26 (61%)

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQI 104
           S+TK++T   + + ++  +L L+  I
Sbjct: 103 SMTKLVTAVAVLQLIEDGRLGLDDPI 128


>gi|78063696|ref|YP_373604.1| Beta-lactamase [Burkholderia sp. 383]
 gi|77971581|gb|ABB12960.1| Beta-lactamase [Burkholderia sp. 383]
          Length = 269

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 35 LFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQD--EPRYPASLTKMMTLYIIFEY 92
          LF     +  AS  HA+P   ++V D    Q+   + D      PAS  K+    + F+ 
Sbjct: 8  LFTFAAGLLAASTSHARP-ICTVVADAATGQVLVQQGDCATRVTPASTFKVAISLMGFDA 66


>gi|303241281|ref|ZP_07327787.1| beta-lactamase [Acetivibrio cellulolyticus CD2]
 gi|302591198|gb|EFL60940.1| beta-lactamase [Acetivibrio cellulolyticus CD2]
          Length = 513

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 14/69 (20%)

Query: 68  GFKQ-----DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKE 122
                    +     AS+TK  T   I +  ++ KL+L+ ++  SK              
Sbjct: 113 YENNIPNMPNTRFAIASMTKQFTAMAILQLYENGKLNLDDKL--SKYITD-------FAR 163

Query: 123 KTYFTTEQG 131
               T  Q 
Sbjct: 164 GEEITIHQL 172


>gi|281336004|gb|ADA62559.1| CTX-M-1 group beta-lactamase [synthetic construct]
          Length = 291

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|157956230|gb|ABW06484.1| extended-spectrum beta-lactamase CTX-M-15 [Escherichia coli]
          Length = 248

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 37  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 95

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 96  HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 146


>gi|281335942|gb|ADA62528.1| CTX-M-15-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|124002621|ref|ZP_01687473.1| beta-lactamase [Microscilla marina ATCC 23134]
 gi|123991849|gb|EAY31236.1| beta-lactamase [Microscilla marina ATCC 23134]
          Length = 438

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 17/62 (27%)

Query: 57  IVIDVNKNQMTGFK--------QDEPRYP------ASLTKMMTLYIIFEYLQSKKLHLNT 102
           IV D    ++   K          E   P      AS++K++T   I + +++KK+ L+ 
Sbjct: 83  IVKD---GKLLYAKAYGEADTINHEKTAPYHLFRTASVSKLVTAVAIMKLVEAKKIRLDQ 139

Query: 103 QI 104
            +
Sbjct: 140 AV 141


>gi|118471770|ref|YP_886779.1| LppW protein [Mycobacterium smegmatis str. MC2 155]
 gi|118173057|gb|ABK73953.1| LppW protein [Mycobacterium smegmatis str. MC2 155]
          Length = 314

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 51/165 (30%), Gaps = 35/165 (21%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTL--YIIFEYLQSKK 97
            M++      A    + +V+D N  Q+     ++    AS+ K+      ++ E      
Sbjct: 73  AMLATNQAADAGADITMLVLDRNTGQLVSNGNEQSIAIASVVKLFIADDLLLQEAKGQTV 132

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           L  +                            + +  ++  S +D +  F     G    
Sbjct: 133 LSADD--------------------------RKMLDVMLRSSDDDAAEIFWNRSGGDP-- 164

Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
              +++  A + G+ +T     +     N  +TA D      +L 
Sbjct: 165 ---IVTRVAARYGLTSTK--PPNDGRWWNTKSTAADLVRYYDMLM 204


>gi|50096615|gb|AAT70415.1| CTX-M-37 extended-spectrum beta-lactamase [Enterobacter cloacae]
 gi|62005106|gb|AAX33264.2| CTX beta-lactamase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|309951213|emb|CBL80619.1| CTX-M-37 beta-lactamase [Kluyvera cryocrescens]
          Length = 291

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|281336010|gb|ADA62562.1| CTX-M-1 group beta-lactamase [synthetic construct]
          Length = 291

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|281335906|gb|ADA62510.1| CTX-M-1 group beta-lactamase [synthetic construct]
          Length = 291

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|289647034|ref|ZP_06478377.1| peptidoglycan glycolsyltranferase FtsI [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 575

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 34/125 (27%), Gaps = 30/125 (24%)

Query: 53  KYSSIVIDVNKNQMTG------FKQDEPR----------------YPASLTK-M-MTLYI 88
             S +++DV   ++        +  +  R                 P S  K + MT   
Sbjct: 243 AGSMVIMDVKTGEVLAMVNQPTYNPNNRRTMVPAAMRNRAIIDVFEPGSTMKPISMTA-- 300

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
               L S +     ++ V           +    KT          ++  S+N   +   
Sbjct: 301 ---ALDSGRWKPTDKVEVYPGTLQIGKYTIRDVTKTEGPILDL-TGILINSSNVGMSKVA 356

Query: 149 EFISG 153
             + G
Sbjct: 357 FDVGG 361


>gi|281336000|gb|ADA62557.1| CTX-M-29-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|172040891|ref|YP_001800605.1| penicillin-binding protein [Corynebacterium urealyticum DSM 7109]
 gi|171852195|emb|CAQ05171.1| penicillin-binding protein [Corynebacterium urealyticum DSM 7109]
          Length = 631

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 41/155 (26%), Gaps = 50/155 (32%)

Query: 55  SSIVIDVNKNQMTGF-------------------------KQDEPRYPASLTKMMTLYII 89
           S++V+D    ++                               E   P S+ K+MT    
Sbjct: 288 SAVVLDAKSAEVIAMATSDTIDPNGDLQKQLRGNKAFGDRNTAETFEPGSIAKIMTA--- 344

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI---------LALITRSA 140
              ++ KK   +  + V   +                T                +  +S+
Sbjct: 345 AAAIEEKKTTPDEVLKV-PGSIEMAG----------VTVRDAWEHGVAPYTTTGVFGKSS 393

Query: 141 NDVSTAFGEFISGS--EKKFAILMSNKAKKIGMQN 173
           N  +    E +      + F      +A  +GM +
Sbjct: 394 NVGTLMLAERVGQEKMYEYFRKFGVGQAADVGMPH 428


>gi|111017197|ref|YP_700169.1| beta lactamase [Rhodococcus jostii RHA1]
 gi|110816727|gb|ABG92011.1| beta lactamase [Rhodococcus jostii RHA1]
          Length = 303

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 14/122 (11%)

Query: 71  QDEPRYPASLTKMMTLYIIF-EYLQSKKLHLNTQIPVSKTAATQNPSKL-YLKEKTYFTT 128
            D+    AS+ K+  L +      +S +L     + V+    T  P+ +   ++    + 
Sbjct: 42  ADDLVVLASVYKL-PLLVALCRAFESGELSPTASVRVNPADCTPGPTGVSTFRDPVVLSW 100

Query: 129 EQGILALITRSANDVS-TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
               L+++T S N  +    G+    S +           ++GM +T      G      
Sbjct: 101 RDLALSMMTVSDNAAADLVLGQVGLASVE-------RTLSELGMTSTRII---GGTADAH 150

Query: 188 IT 189
            +
Sbjct: 151 RS 152


>gi|31096351|gb|AAP43508.1| CTX-M-30 beta-lactamase [Citrobacter freundii]
          Length = 291

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|30351067|gb|AAP22736.1| beta-lactamase CTX-M-29 [Escherichia coli]
          Length = 291

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|71736584|ref|YP_276236.1| peptidoglycan glycolsyltranferase FtsI [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257483454|ref|ZP_05637495.1| peptidoglycan glycolsyltranferase FtsI [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289624976|ref|ZP_06457930.1| peptidoglycan glycolsyltranferase FtsI [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|71557137|gb|AAZ36348.1| peptidoglycan glycolsyltranferase FtsI [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320322456|gb|EFW78549.1| peptidoglycan glycosyltransferase FtsI [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330075|gb|EFW86062.1| peptidoglycan glycosyltransferase FtsI [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 575

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 34/125 (27%), Gaps = 30/125 (24%)

Query: 53  KYSSIVIDVNKNQMTG------FKQDEPR----------------YPASLTK-M-MTLYI 88
             S +++DV   ++        +  +  R                 P S  K + MT   
Sbjct: 243 AGSMVIMDVKTGEVLAMVNQPTYNPNNRRTMVPAAMRNRAIIDVFEPGSTMKPISMTA-- 300

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
               L S +     ++ V           +    KT          ++  S+N   +   
Sbjct: 301 ---ALDSGRWKPTDKVEVYPGTLQIGKYTIRDVTKTEGPILDL-TGILINSSNVGMSKVA 356

Query: 149 EFISG 153
             + G
Sbjct: 357 FDVGG 361


>gi|32471748|ref|NP_864741.1| D-aminoacylase [Rhodopirellula baltica SH 1]
 gi|32397119|emb|CAD72423.1| D-aminoacylase [Rhodopirellula baltica SH 1]
          Length = 958

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQI--PVSKTAATQNPSKLYLKEKTYFTTEQG 131
            AS++K +T   I + +   KL L+ ++   +      +  SK+  + +   T E  
Sbjct: 632 IASISKPITAVAILQLVDQGKLSLDDKVFEILDHEPHVEEGSKID-ERQDQITIEHL 687


>gi|281335928|gb|ADA62521.1| CTX-M-30-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|271968906|ref|YP_003343102.1| beta-lactamase [Streptosporangium roseum DSM 43021]
 gi|270512081|gb|ACZ90359.1| putative beta-lactamase [Streptosporangium roseum DSM 43021]
          Length = 458

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 7/80 (8%)

Query: 72  DEPRYPASLTKMMTLYI---IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKE-KTYFT 127
           D PR   S+ K+   Y+   + + +    L  NT++ V     +     L  +   +  T
Sbjct: 190 DRPRPLGSIFKL---YVLGAVAQKIHDGGLSWNTELTVKPEWKSLGAGGLADRPDNSTTT 246

Query: 128 TEQGILALITRSANDVSTAF 147
             +    +I+ S N  +   
Sbjct: 247 VHEAAKLMISISDNTAADIL 266


>gi|113970270|ref|YP_734063.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Shewanella sp. MR-4]
 gi|113884954|gb|ABI39006.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Shewanella sp. MR-4]
          Length = 513

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 33/77 (42%), Gaps = 16/77 (20%)

Query: 30 LMGKILFLSIIMISMASE------------LHAKPKYSSIVI---DVNKNQMTGFKQDEP 74
          L+G +L + +   ++A+                 P++S + +   D++ N +   +Q + 
Sbjct: 23 LLGSMLSILLPTQAIAAIHPLDESTFAKQIADIAPRHSQVALLARDLSTNTLLYSQQADT 82

Query: 75 RY-PASLTKMMTLYIIF 90
           + PAS  K++T     
Sbjct: 83 LFIPASTQKVLTAVTAM 99


>gi|114047539|ref|YP_738089.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Shewanella sp. MR-7]
 gi|113888981|gb|ABI43032.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Shewanella sp. MR-7]
          Length = 513

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 33/77 (42%), Gaps = 16/77 (20%)

Query: 30 LMGKILFLSIIMISMASE------------LHAKPKYSSIVI---DVNKNQMTGFKQDEP 74
          L+G +L + +   ++A+                 P++S + +   D++ N +   +Q + 
Sbjct: 23 LLGSMLSILLPTQAIAAIHPLDESTFAKQIADIAPRHSQVALLARDLSTNTLLYSQQADT 82

Query: 75 RY-PASLTKMMTLYIIF 90
           + PAS  K++T     
Sbjct: 83 LFIPASTQKVLTAVTAM 99


>gi|284031110|ref|YP_003381041.1| beta-lactamase [Kribbella flavida DSM 17836]
 gi|283810403|gb|ADB32242.1| beta-lactamase [Kribbella flavida DSM 17836]
          Length = 432

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQI 104
           S+TK MT  ++ +      L LN  +
Sbjct: 64  SITKTMTAVLVLQARDDGLLGLNDAV 89


>gi|197106828|ref|YP_002132205.1| beta-lactamase [Phenylobacterium zucineum HLK1]
 gi|196480248|gb|ACG79776.1| beta-lactamase [Phenylobacterium zucineum HLK1]
          Length = 380

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 71  QDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ--NPSKLYLKEKTYF- 126
             +  YP  S++K+     + +     +L L+  + ++    +    P    +  + Y  
Sbjct: 99  DPDGVYPQQSVSKLWVAIAVLKAADEGRLELDRTVLLTDADRSVFFQPVAYNIGPQGYAT 158

Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEK 156
           T E  +   I +S N  +      + G E 
Sbjct: 159 TIEALLRRAIVQSDNAANDRLMREVGGPEA 188


>gi|116671193|ref|YP_832126.1| Serine-type D-Ala-D-Ala carboxypeptidase [Arthrobacter sp. FB24]
 gi|116611302|gb|ABK04026.1| Serine-type D-Ala-D-Ala carboxypeptidase [Arthrobacter sp. FB24]
          Length = 429

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 15/66 (22%)

Query: 72  DEPRYPA------SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTY 125
           D+P  PA      S+TK  T  +I + +Q KK+ L+  +     AA +      + +   
Sbjct: 112 DDPVTPADHVRIGSITKTWTTTVILQLVQEKKIKLDDPV-----AAYRP----DVPDGAN 162

Query: 126 FTTEQG 131
            T EQ 
Sbjct: 163 ITIEQL 168


>gi|308176857|ref|YP_003916263.1| hypothetical protein AARI_10820 [Arthrobacter arilaitensis Re117]
 gi|307744320|emb|CBT75292.1| hypothetical protein AARI_10820 [Arthrobacter arilaitensis Re117]
          Length = 76

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 13/66 (19%)

Query: 25 QRNIQLMGKILFLSIIMISMASEL--HAKPKY----SSIVIDVNKNQMTGFKQDEPRYPA 78
          +R + L    + L  + +S  +    HA  +     S I++D    ++  ++      PA
Sbjct: 3  KRMLGLAAAPVILGCLALSTPATAGQHAPAQTGEWNSVILMDAETGEVLNYENS----PA 58

Query: 79 ---SLT 81
             S T
Sbjct: 59 VEDSTT 64


>gi|281335946|gb|ADA62530.1| CTX-M-36-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|325002699|ref|ZP_08123811.1| hypothetical protein PseP1_28224 [Pseudonocardia sp. P1]
          Length = 366

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 47/157 (29%), Gaps = 29/157 (18%)

Query: 48  LHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKM--MTLYIIFEYLQSKKLHLNTQIP 105
           +   P+  ++V D  +      + D     AS +K   M  Y     +    +  +  + 
Sbjct: 45  VATHPEDVALVADDGRGTSLAHRSDAVHPMASASKALNMVAY--ARAVARGAVSPDEPVR 102

Query: 106 VSK-TAATQNPS----------KLYL--------KEKTYFTTEQGILALITRSANDVSTA 146
           V          S           + +              T +Q +  ++  S N     
Sbjct: 103 VGDWERWAVPGSGEDAHAKALDHVGIPRQGFRARDPDQTVTLDQVVAQMMIWSDNAAPDF 162

Query: 147 FGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
             + +          +++ A+ +G ++    + +GL 
Sbjct: 163 LRDRLGD------RALTDAAEAVGWRDGELPSTTGLT 193


>gi|298488529|ref|ZP_07006559.1| peptidoglycan glycosyltransferase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156870|gb|EFH97960.1| peptidoglycan glycosyltransferase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 576

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 34/125 (27%), Gaps = 30/125 (24%)

Query: 53  KYSSIVIDVNKNQMTG------FKQDEPR----------------YPASLTK-M-MTLYI 88
             S +++DV   ++        +  +  R                 P S  K + MT   
Sbjct: 244 AGSMVIMDVKTGEVLAMVNQPTYNPNNRRTMVPAAMRNRAIIDVFEPGSTMKPISMTA-- 301

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
               L S +     ++ V           +    KT          ++  S+N   +   
Sbjct: 302 ---ALDSGRWKPTDKVEVYPGTLQIGKYTIRDVTKTEGPILDL-TGILINSSNVGMSKVA 357

Query: 149 EFISG 153
             + G
Sbjct: 358 FDVGG 362


>gi|281335938|gb|ADA62526.1| CTX-M-36-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|329767340|ref|ZP_08258865.1| hypothetical protein HMPREF0428_00562 [Gemella haemolysans M341]
 gi|328836029|gb|EGF85720.1| hypothetical protein HMPREF0428_00562 [Gemella haemolysans M341]
          Length = 363

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK-LY 119
           +N  ++    + +P    S  K+    I+ +  +   L +  +  ++KT          Y
Sbjct: 131 LNTGELIEMNETQPMTAGSTYKLPLNMIVIDDFEKYNLSMTERYDITKTEYEYIGEHDTY 190

Query: 120 LKE-KTYFTTEQGILALITRSANDVSTAFGEFISG 153
           ++      T  Q     +  S N  + A G+ I G
Sbjct: 191 VRVFNGAMTIPQMQYYSLVYSENTPAYALGDRIGG 225


>gi|298104552|gb|ADI55020.1| extended spectrum beta lactamase PER-1 [Aeromonas caviae]
          Length = 308

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 76/229 (33%), Gaps = 27/229 (11%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK--LYLKEKTYFT--T 128
           E     S+ K+    ++   +   KL LN  + V++    QN     +   +   F+   
Sbjct: 65  EKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFSVPV 124

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK---NASGLHDK 185
           +Q +   ++ S N       E + G        + +  + +G++ T            D+
Sbjct: 125 QQLLQYSVSHSDNVACDLLFELVGGP-----AALHDYIQSMGIKETAVVANEAQMHADDQ 179

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRK---FRYRNRIITNHNKLLNKMH------- 235
            Q             + K F Q  +     +   +++     T   +L   +        
Sbjct: 180 VQYQNWTSM-KGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAH 238

Query: 236 --NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ-ERDQKAL 281
                GIK G T  +  ++   L     P++  V    +++  R  +A+
Sbjct: 239 KTGTSGIKAGKT-AATNDLGIILLPDGRPLLVAVFVKDSAESSRTNEAI 286


>gi|259014680|gb|ACV88640.1| beta-lactamase CTX-M15 [Escherichia coli]
          Length = 249

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 40  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 98

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 99  HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 149


>gi|254459462|ref|ZP_05072878.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Rhodobacterales bacterium HTCC2083]
 gi|206676051|gb|EDZ40538.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 503

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 58  VIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
           V D++  ++   K       PAS  K +T     + L
Sbjct: 73  VADLSTGKLLETKNKAIGLPPASTAKAITALYALDAL 109


>gi|157956228|gb|ABW06483.1| extended-spectrum beta-lactamase CTX-M-15 [Escherichia coli]
          Length = 240

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 27  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 85

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 86  HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 136


>gi|327538209|gb|EGF24890.1| N-acyl-D-amino-acid deacylase [Rhodopirellula baltica WH47]
          Length = 947

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQI--PVSKTAATQNPSKLYLKEKTYFTTEQG 131
            AS++K +T   I + +   KL L+ ++   +      +  SK+  + +   T E  
Sbjct: 617 IASISKPITAVAILQLVDQGKLSLDDKVFEILDHEPHVEEGSKID-ERQDQITIEHL 672


>gi|254966757|gb|ACT97378.1| HGB-1 beta-lactamase [uncultured organism]
          Length = 301

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 57/169 (33%), Gaps = 17/169 (10%)

Query: 89  IFEYLQSKKLHLNTQIPV-SKTAATQNPSKL---YLKEKTYFTTEQGILALITRSANDVS 144
           + + +    + L++ I V S    +   S L   +  +    +  + +   I++S N+  
Sbjct: 79  VLDKMDKGHIALDSLIEVKSSQLKSNTYSPLRDKFPDQDITISLGELLKYSISQSDNNAC 138

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL-----HDKNQITTARDQAILGI 199
               E+  G        ++   K +G+++        L           +T  +   L  
Sbjct: 139 DILIEYAGG-----IDQVNEYVKSLGIKDCNLVATEDLMHTSGDAYLNWSTPEEVVRLLN 193

Query: 200 LLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN--IDGIKTGYTR 246
           +  K  P +   +            T  +KL  ++    I G KTG + 
Sbjct: 194 IADK-HPLFGTQYKDFLQAIMQETSTGKDKLKGQLPADVIVGHKTGSSD 241


>gi|94269574|ref|ZP_01291501.1| Peptidase S13, D-Ala-D-Ala carboxypeptidase C [delta
          proteobacterium MLMS-1]
 gi|93451165|gb|EAT02086.1| Peptidase S13, D-Ala-D-Ala carboxypeptidase C [delta
          proteobacterium MLMS-1]
          Length = 428

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)

Query: 64 NQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
           ++      D P  PAS  K+ T  +  E L
Sbjct: 40 GRLLAAHNLDRPLTPASTWKIATALLALERL 70


>gi|146302515|ref|YP_001197106.1| beta-lactamase [Flavobacterium johnsoniae UW101]
 gi|146156933|gb|ABQ07787.1| beta-lactamase [Flavobacterium johnsoniae UW101]
          Length = 400

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 23/58 (39%), Gaps = 14/58 (24%)

Query: 61  VNKNQMTGFK--------------QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
               Q+   +               + P   AS++K++T   + + + + K+ L+ ++
Sbjct: 86  ARNGQIIFERYNGFANKNEGTKITPETPVQIASVSKVLTATAVLKLVNAGKIELDQKV 143


>gi|281335964|gb|ADA62539.1| CTX-M-1 group beta-lactamase [synthetic construct]
          Length = 291

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|259014678|gb|ACV88639.1| beta-lactamase CTX-M15 [Escherichia coli]
          Length = 248

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 40  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 98

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 99  HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 149


>gi|157956218|gb|ABW06478.1| extended-spectrum beta-lactamase CTX-M-15 [Escherichia coli]
          Length = 268

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 46  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 104

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 105 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 155


>gi|157956214|gb|ABW06476.1| extended-spectrum beta-lactamase CTX-M-15 [Escherichia coli]
          Length = 267

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 45  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 103

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 104 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 154


>gi|47109376|emb|CAG28417.1| CTX-M-12a enzyme [Klebsiella pneumoniae]
          Length = 291

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPSLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|331092932|ref|ZP_04587745.2| peptidoglycan glycolsyltransferase FtsI [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022140|gb|EGI02197.1| peptidoglycan glycolsyltransferase FtsI [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 576

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 34/125 (27%), Gaps = 30/125 (24%)

Query: 53  KYSSIVIDVNKNQMTG------FKQDEPR----------------YPASLTK-M-MTLYI 88
             S +++DV   ++        +  +  R                 P S  K + MT   
Sbjct: 244 AGSMVIMDVKTGEVLAMVNQPTYNPNNRRTMVPAAMRNRAIIDVFEPGSTMKPISMTA-- 301

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
               L S +     ++ V           +    KT          ++  S+N   +   
Sbjct: 302 ---ALDSGRWKPTDKVEVYPGTLQIGKYTIRDVTKTEGPILDL-TGILINSSNVGMSKVA 357

Query: 149 EFISG 153
             + G
Sbjct: 358 FDVGG 362


>gi|281335998|gb|ADA62556.1| CTX-M-1 group beta-lactamase [synthetic construct]
          Length = 291

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|281335932|gb|ADA62523.1| CTX-M-62-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|31794770|ref|NP_857263.1| lipoprotein LpqF [Mycobacterium bovis AF2122/97]
 gi|121639513|ref|YP_979737.1| putative lipoprotein lpqF [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224992010|ref|YP_002646699.1| putative lipoprotein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|31620367|emb|CAD95810.1| PROBABLE CONSERVED LIPOPROTEIN LPQF [Mycobacterium bovis AF2122/97]
 gi|121495161|emb|CAL73647.1| Probable conserved lipoprotein lpqF [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224775125|dbj|BAH27931.1| putative lipoprotein [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 452

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 6/78 (7%)

Query: 73  EPRYPASLTKMMTLYIIFE---YLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE 129
           E    AS+ K+   Y++      +Q   +  +  + V+  +     S L L      +  
Sbjct: 189 ESLPLASIFKL---YVLHALAGAVQHNTVSWDDLLTVTAKSKAVGSSGLELPVGARVSVR 245

Query: 130 QGILALITRSANDVSTAF 147
                +I  S N  +   
Sbjct: 246 TAAEKMIATSDNMATDLL 263


>gi|330868709|gb|EGH03418.1| peptidoglycan glycolsyltransferase FtsI [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330875015|gb|EGH09164.1| peptidoglycan glycolsyltransferase FtsI [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330888580|gb|EGH21241.1| peptidoglycan glycolsyltransferase FtsI [Pseudomonas syringae pv.
           mori str. 301020]
 gi|330987128|gb|EGH85231.1| peptidoglycan glycolsyltransferase FtsI [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 576

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 34/125 (27%), Gaps = 30/125 (24%)

Query: 53  KYSSIVIDVNKNQMTG------FKQDEPR----------------YPASLTK-M-MTLYI 88
             S +++DV   ++        +  +  R                 P S  K + MT   
Sbjct: 244 AGSMVIMDVKTGEVLAMVNQPTYNPNNRRTMVPAAMRNRAIIDVFEPGSTMKPISMTA-- 301

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
               L S +     ++ V           +    KT          ++  S+N   +   
Sbjct: 302 ---ALDSGRWKPTDKVEVYPGTLQIGKYTIRDVTKTEGPILDL-TGILINSSNVGMSKVA 357

Query: 149 EFISG 153
             + G
Sbjct: 358 FDVGG 362


>gi|281335952|gb|ADA62533.1| CTX-M-1 group beta-lactamase [synthetic construct]
          Length = 291

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|229168158|ref|ZP_04295886.1| hypothetical protein bcere0007_31170 [Bacillus cereus AH621]
 gi|228615402|gb|EEK72499.1| hypothetical protein bcere0007_31170 [Bacillus cereus AH621]
          Length = 669

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            +D     AS++K  T   + + +   KL L+  +
Sbjct: 103 NKDTVFQIASVSKTFTALAVMQQVDKGKLKLDQDV 137


>gi|282900879|ref|ZP_06308815.1| Peptidase S13, D-Ala-D-Ala carboxypeptidase C [Cylindrospermopsis
           raciborskii CS-505]
 gi|281194217|gb|EFA69178.1| Peptidase S13, D-Ala-D-Ala carboxypeptidase C [Cylindrospermopsis
           raciborskii CS-505]
          Length = 504

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 57  IVI-DVNKNQMTGFKQDEPRY-PASLTKMMTL 86
           I+I +++ +Q+   +  +  + PAS TK++T 
Sbjct: 78  ILIKNLSSDQILYSRDAQKYFIPASTTKILTA 109


>gi|157956212|gb|ABW06475.1| extended-spectrum beta-lactamase CTX-M-15 [Klebsiella pneumoniae]
          Length = 236

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 27  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 85

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 86  HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 136


>gi|1705476|sp|P52664|BLAB_PROVU RecName: Full=Beta-lactamase; AltName: Full=Cefuroximase; Flags:
           Precursor
 gi|511056|emb|CAA56427.1| beta-lactamase [Proteus vulgaris]
          Length = 300

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 47/112 (41%), Gaps = 7/112 (6%)

Query: 62  NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV--SKTAATQNPSKLY 119
           + +Q+T  + +E    AS +K+M +  + +  + +   L+  I +  S   A    ++ +
Sbjct: 59  DNSQITY-RGEERFAMASTSKVMAVAAVLKESEKQAGLLDKNITIKKSDLVAYSPITEKH 117

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
           L      +  Q   A +  S N       +++ G     +FA  +++   ++
Sbjct: 118 LVTG--MSLAQLSAATLQYSDNTAMNKILDYLGGPAKVTQFARSINDVTYRL 167


>gi|317494174|ref|ZP_07952590.1| beta-lactamase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917947|gb|EFV39290.1| beta-lactamase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 383

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 39/113 (34%), Gaps = 33/113 (29%)

Query: 25  QRNIQLM-GKILFLSIIMISMASELHAKPKYSSIVID-------VNKNQ----MTGFKQD 72
           +R ++     +L ++  +I +++        +S V+D        N       +     +
Sbjct: 3   KRVLKFFPATLLAVACALIPISAFAQQPEPLASQVVDGYAEHIFYNSGAAAMALVAIDNN 62

Query: 73  EPRY---------------------PASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +  +                      ASLTK+MT  ++ +    +K+ L   +
Sbjct: 63  QQVFRSFGETRPGNDIRPRKDSLIRIASLTKLMTSEVLVKLADERKVSLYDPL 115


>gi|11321258|gb|AAG34108.1| cefotaxime-hydrolyzing beta-lactamase [Klebsiella pneumoniae]
 gi|31096326|gb|AAP43783.1| beta-lactamase CTX-M-12 [Klebsiella pneumoniae]
 gi|47087856|gb|AAT10373.1| extended spectrum beta-lactamase CTX-M12 [Pantoea agglomerans]
 gi|110084283|gb|ABG49386.1| extended-spectrum beta-lactamase CTX-M-12 [Escherichia coli]
 gi|110084286|gb|ABG49388.1| extended-spectrum beta-lactamase CTX-M-12 [Escherichia coli]
 gi|110084289|gb|ABG49390.1| extended-spectrum beta-lactamase CTX-M-12 [Escherichia coli]
 gi|110811595|gb|ABG91579.1| extended-spectrum beta-lactamase CTX-M-12 [Klebsiella pneumoniae]
          Length = 291

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPSLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|238863970|gb|ACR66261.1| beta-lactamase CTX-M15 [Kluyvera intermedia]
 gi|238863972|gb|ACR66262.1| beta-lactamase CTX-M15 [Escherichia coli]
 gi|238863974|gb|ACR66263.1| beta-lactamase CTX-M15 [Klebsiella pneumoniae]
 gi|238863976|gb|ACR66264.1| beta-lactamase CTX-M15 [Escherichia coli]
 gi|238863978|gb|ACR66265.1| beta-lactamase CTX-M15 [Klebsiella pneumoniae]
 gi|238863980|gb|ACR66266.1| beta-lactamase CTX-M15 [Klebsiella pneumoniae]
 gi|238863982|gb|ACR66267.1| beta-lactamase CTX-M15 [Escherichia coli]
 gi|238863984|gb|ACR66268.1| beta-lactamase CTX-M15 [Raoultella terrigena]
 gi|238863986|gb|ACR66269.1| beta-lactamase CTX-M15 [Klebsiella pneumoniae]
 gi|238863988|gb|ACR66270.1| beta-lactamase CTX-M15 [Escherichia coli]
 gi|238863990|gb|ACR66271.1| beta-lactamase CTX-M15 [Escherichia coli]
 gi|238863992|gb|ACR66272.1| beta-lactamase CTX-M15 [Raoultella terrigena]
 gi|238863994|gb|ACR66273.1| beta-lactamase CTX-M15 [Klebsiella pneumoniae]
 gi|238863996|gb|ACR66274.1| beta-lactamase CTX-M15 [Escherichia coli]
 gi|238863998|gb|ACR66275.1| beta-lactamase CTX-M15 [Escherichia coli]
 gi|238864000|gb|ACR66276.1| beta-lactamase CTX-M15 [Raoultella terrigena]
 gi|238864002|gb|ACR66277.1| beta-lactamase CTX-M15 [Klebsiella oxytoca]
 gi|238864004|gb|ACR66278.1| beta-lactamase CTX-M15 [Escherichia coli]
 gi|238864006|gb|ACR66279.1| beta-lactamase CTX-M15 [Escherichia coli]
 gi|238864008|gb|ACR66280.1| beta-lactamase CTX-M15 [Escherichia coli]
 gi|238864010|gb|ACR66281.1| beta-lactamase CTX-M15 [Escherichia coli]
 gi|238864012|gb|ACR66282.1| beta-lactamase CTX-M15 [Klebsiella pneumoniae]
 gi|238864014|gb|ACR66283.1| beta-lactamase CTX-M15 [Klebsiella pneumoniae]
 gi|238864016|gb|ACR66284.1| beta-lactamase CTX-M15 [Escherichia coli]
 gi|238864018|gb|ACR66285.1| beta-lactamase CTX-M15 [Escherichia coli]
 gi|238864020|gb|ACR66286.1| beta-lactamase CTX-M15 [Klebsiella pneumoniae]
 gi|238864022|gb|ACR66287.1| beta-lactamase CTX-M15 [Escherichia coli]
 gi|238864024|gb|ACR66288.1| beta-lactamase CTX-M15 [Klebsiella sp. 49]
 gi|238864026|gb|ACR66289.1| beta-lactamase CTX-M15 [Klebsiella pneumoniae]
 gi|238864028|gb|ACR66290.1| beta-lactamase CTX-M15 [Klebsiella sp. 51]
 gi|238864030|gb|ACR66291.1| beta-lactamase CTX-M15 [Escherichia coli]
 gi|238864032|gb|ACR66292.1| beta-lactamase CTX-M15 [Escherichia coli]
 gi|238864034|gb|ACR66293.1| beta-lactamase CTX-M15 [Escherichia coli]
 gi|238864036|gb|ACR66294.1| beta-lactamase CTX-M15 [Escherichia coli]
          Length = 274

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 48  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 106

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 107 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 157


>gi|195940744|ref|ZP_03086126.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
           O157:H7 str. EC4024]
          Length = 141

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 16/27 (59%)

Query: 262 PIVAVVMGMPTSQERDQKALELITSFL 288
            +++ VMG  T + R+ ++ +L+T   
Sbjct: 1   RLISAVMGGRTFKGREAESKKLLTWGF 27


>gi|94502823|gb|ABF29640.1| beta-lactamase [Escherichia coli]
          Length = 189

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 6/115 (5%)

Query: 59  ID-VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           ID  +  Q+   + DE     S +K+M    + +  +++K  LN  + + K A   N + 
Sbjct: 1   IDTADNTQVLY-RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYNP 58

Query: 118 LYLK-EKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
           +  K      T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 59  IAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 113


>gi|84497545|ref|ZP_00996367.1| putative carboxypeptidase [Janibacter sp. HTCC2649]
 gi|84382433|gb|EAP98315.1| putative carboxypeptidase [Janibacter sp. HTCC2649]
          Length = 465

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 58  VIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           V++V   ++   K     R PAS  K++T ++    +   +    T  PV + AA   P+
Sbjct: 114 VVEVATGRILWAKNPTVARVPASNEKLVTAFVAL--VSMGESTRFTT-PVLQVAAQ--PA 168

Query: 117 KLYLK 121
            +YLK
Sbjct: 169 TVYLK 173


>gi|331011572|gb|EGH91628.1| peptidoglycan glycolsyltransferase FtsI [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 555

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 34/125 (27%), Gaps = 30/125 (24%)

Query: 53  KYSSIVIDVNKNQMTG------FKQDEPR----------------YPASLTK-M-MTLYI 88
             S +++DV   ++        +  +  R                 P S  K + MT   
Sbjct: 223 AGSMVIMDVKTGEVLAMVNQPTYNPNNRRTMVPAAMRNRAIIDVFEPGSTMKPISMTA-- 280

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
               L S +     ++ V           +    KT          ++  S+N   +   
Sbjct: 281 ---ALDSGRWKPTDKVEVYPGTLQIGKYTIRDVTKTEGPILDL-TGILINSSNVGMSKVA 336

Query: 149 EFISG 153
             + G
Sbjct: 337 FDVGG 341


>gi|320333944|ref|YP_004170655.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
          anine-endopeptidase [Deinococcus maricopensis DSM
          21211]
 gi|319755233|gb|ADV66990.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
          anine-endopeptidase [Deinococcus maricopensis DSM
          21211]
          Length = 419

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 50 AKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKM--MTLYI 88
          A     ++V+D +  +    +  D+   PAS+ K+  M+  +
Sbjct: 44 ANAHAGALVLDADTGETLYERAPDDAFTPASVRKLFSMSAVL 85


>gi|94502867|gb|ABF29664.1| beta-lactamase [Enterobacter cloacae]
          Length = 231

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 28  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 86

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 87  HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 137


>gi|269929220|ref|YP_003321541.1| beta-lactamase [Sphaerobacter thermophilus DSM 20745]
 gi|269788577|gb|ACZ40719.1| beta-lactamase [Sphaerobacter thermophilus DSM 20745]
          Length = 434

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 45/138 (32%), Gaps = 12/138 (8%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSK 108
           P    IV+ +         Q +  +  ASL K  +M     +   ++  +  +  I +  
Sbjct: 107 PAEIGIVVALPDGTRLYEYQPDRLFEAASLYKLGIMVEL--YRQREAGWISFDETITLLP 164

Query: 109 TAATQNPSKLYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
               + P     +   T    +  + A+I  S+N  S A  + I          ++    
Sbjct: 165 GYYEEGPDVYGFEAIGTAVPIDDLLWAMIAASSNVASHALLDRIGN------EAVNATMA 218

Query: 168 KIGMQNTIYKNASGLHDK 185
            +G+  T  +   G    
Sbjct: 219 GLGLVQTEIRWQPGYVSP 236


>gi|295839281|ref|ZP_06826214.1| beta-lactamase [Streptomyces sp. SPB74]
 gi|197696896|gb|EDY43829.1| beta-lactamase [Streptomyces sp. SPB74]
          Length = 362

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           + D P   ASLTK+ T     + ++   L L+T++
Sbjct: 59  RPDTPFDLASLTKLFTAIATLQQVERGTLALDTRV 93


>gi|319947477|ref|ZP_08021709.1| MutT/NUDIX family protein [Streptococcus australis ATCC 700641]
 gi|319746417|gb|EFV98678.1| MutT/NUDIX family protein [Streptococcus australis ATCC 700641]
          Length = 149

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 1/78 (1%)

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTAR 192
             ++ ++ N      G  I   E  F  L     +++G   T      G  D+   ++ R
Sbjct: 32  KIILVQAPNGAWFLPGGEIEAGEDHFLALERELIEELGFTAT-IGEYYGQADEYFYSSHR 90

Query: 193 DQAILGILLRKNFPQYYK 210
           D              + +
Sbjct: 91  DTHYYNPAYIYEVTDFVE 108


>gi|312867265|ref|ZP_07727475.1| conserved hypothetical protein [Streptococcus parasanguinis F0405]
 gi|311097394|gb|EFQ55628.1| conserved hypothetical protein [Streptococcus parasanguinis F0405]
          Length = 335

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/73 (12%), Positives = 23/73 (31%), Gaps = 2/73 (2%)

Query: 87  YIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGILALITRSANDVS 144
            ++ + +   KL+L  +  ++ T                   +        +  S N  +
Sbjct: 128 MLVVDEVAKGKLNLTDRFDITNTYYEYVGEHDNYVAAFDGAMSIPDMQRYSLVYSENTPA 187

Query: 145 TAFGEFISGSEKK 157
            A  + + G E+ 
Sbjct: 188 YALADRLGGMEQA 200


>gi|119026326|ref|YP_910171.1| putative beta-lactamase (class A) precursor [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765910|dbj|BAF40089.1| putative beta-lactamase (class A) precursor [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 357

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 61/172 (35%), Gaps = 30/172 (17%)

Query: 37  LSIIMISMASELHAKPKYSSIVI--DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQ 94
           L   + S  S   A+ + S  V   D++    T        Y AS+ K+M +  +F+ + 
Sbjct: 122 LLAALQSQLSGKTAQYQGSWQVYVEDLDSGA-TAVVNSHQSYSASVVKLMVMLAVFQKVS 180

Query: 95  SKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI-SG 153
              L  +                         + +  +  +IT S+N+ + A  E + SG
Sbjct: 181 EGTLAED------------------------ASLDGLLEQMITVSSNEATNALVERLGSG 216

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASG--LHDKNQITTARDQAILGILLRK 203
           +      ++++ A + G   +   +  G   +   + T+  DQ        +
Sbjct: 217 NINAGFGVVNSVAAQYGFNESHLNSRMGDLSNYSTKQTSVADQGRFLAAAYR 268


>gi|68012688|gb|AAY84742.1| extended-spectrum beta-lactamase CTX-M-42 [Escherichia coli]
          Length = 291

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 48/133 (36%), Gaps = 5/133 (3%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYK 177
               T  +  +   A +  S N         + G  S   FA  + ++  ++    T   
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTETTLN 173

Query: 178 NASGLHDKNQITT 190
            A     ++  + 
Sbjct: 174 TAIPGDPRDTTSP 186


>gi|325961730|ref|YP_004239636.1| D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323467817|gb|ADX71502.1| D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 519

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 30/115 (26%), Gaps = 14/115 (12%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT--- 112
           +V D    Q+   +   E R PAS  K++T            L  + +      A     
Sbjct: 115 LVQDALTGQVLFDRGGSENRVPASNLKLLTAIAALRA-----LGPDHRFTTKAVAGPNPG 169

Query: 113 ----QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF-GEFISGSEKKFAILM 162
                    + L        +    A +   A     A   E  +G  K      
Sbjct: 170 QVVLVGGGDVLLGPGESNPEQTLGRAGLATLAAQTVAALQAEGRAGEIKVLVDDS 224


>gi|238864038|gb|ACR66295.1| beta-lactamase CTX-M3 [Escherichia coli]
 gi|238864040|gb|ACR66296.1| beta-lactamase CTX-M3 [Escherichia coli]
          Length = 274

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 48  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 106

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 107 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 157


>gi|119509490|ref|ZP_01628638.1| transposase [Nodularia spumigena CCY9414]
 gi|119509603|ref|ZP_01628750.1| transposase [Nodularia spumigena CCY9414]
 gi|119510907|ref|ZP_01630030.1| transposase [Nodularia spumigena CCY9414]
 gi|119511384|ref|ZP_01630496.1| transposase [Nodularia spumigena CCY9414]
 gi|119511582|ref|ZP_01630689.1| transposase [Nodularia spumigena CCY9414]
 gi|119512249|ref|ZP_01631337.1| transposase [Nodularia spumigena CCY9414]
 gi|119512562|ref|ZP_01631639.1| transposase [Nodularia spumigena CCY9414]
 gi|119513222|ref|ZP_01632267.1| transposase [Nodularia spumigena CCY9414]
 gi|119513517|ref|ZP_01632538.1| transposase [Nodularia spumigena CCY9414]
 gi|119461833|gb|EAW42849.1| transposase [Nodularia spumigena CCY9414]
 gi|119462116|gb|EAW43108.1| transposase [Nodularia spumigena CCY9414]
 gi|119462762|gb|EAW43722.1| transposase [Nodularia spumigena CCY9414]
 gi|119463093|gb|EAW44042.1| transposase [Nodularia spumigena CCY9414]
 gi|119463743|gb|EAW44673.1| transposase [Nodularia spumigena CCY9414]
 gi|119463929|gb|EAW44854.1| transposase [Nodularia spumigena CCY9414]
 gi|119464435|gb|EAW45349.1| transposase [Nodularia spumigena CCY9414]
 gi|119465792|gb|EAW46682.1| transposase [Nodularia spumigena CCY9414]
 gi|119465896|gb|EAW46785.1| transposase [Nodularia spumigena CCY9414]
          Length = 133

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 259 KDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKL 318
               IV VV G P  +       E    F EK+     + ++ +    T  KK       
Sbjct: 13  NGRDIVDVVAGEPGRKSDINLFRENKNGFEEKQKFSGDKAYQGEKSIKTPEKKP-----R 67

Query: 319 KRTYSQFKKIDAKAHSTQ 336
           K+  S  +KI  K  +++
Sbjct: 68  KKELSSEQKIQNKELASE 85


>gi|284035761|ref|YP_003385691.1| beta-lactamase [Spirosoma linguale DSM 74]
 gi|283815054|gb|ADB36892.1| beta-lactamase [Spirosoma linguale DSM 74]
          Length = 422

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 20/34 (58%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           QD     ASL+K +T   I + ++  K++++T +
Sbjct: 74  QDIAFPIASLSKTLTAISILQLMEQGKVNIDTPV 107


>gi|157956226|gb|ABW06482.1| extended-spectrum beta-lactamase CTX-M-15 [Escherichia coli]
          Length = 263

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 46  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 104

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 105 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 155


>gi|94502861|gb|ABF29661.1| beta-lactamase [Enterobacter cloacae]
          Length = 230

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 28  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 86

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 87  HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 137


>gi|94502857|gb|ABF29659.1| beta-lactamase [Enterobacter cloacae]
 gi|94502871|gb|ABF29666.1| beta-lactamase [Enterobacter cloacae]
          Length = 228

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 27  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 85

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 86  HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 136


>gi|323709061|gb|ADY02545.1| beta-lactamase CTX-M-101 [Escherichia coli]
          Length = 291

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  + I A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELIAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|66932795|gb|AAY58235.1| extended-spectrum beta-lactamase CTX-M-3 [Escherichia coli]
 gi|75914697|gb|ABA29760.1| extended-spectrum beta-lactamase CTX-M-3-like [Escherichia coli]
 gi|84621436|gb|ABC59555.1| beta lactamase CTX-M-3 [Klebsiella pneumoniae]
          Length = 282

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|41079307|gb|AAR99493.1| extended-spectrum beta-lactamase CTX-M-34 [Escherichia coli]
          Length = 291

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|399121|sp|P30897|BLAC_PROMI RecName: Full=Beta-lactamase; AltName: Full=Carbenicillinase;
           Flags: Precursor
 gi|216841|dbj|BAA02496.1| beta-lactamase precursor [Proteus mirabilis]
          Length = 298

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 1/95 (1%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK-TAATQNPSKL 118
           D+   +    K +E    +S  K +    + + +   K  ++  +  S+    T +P   
Sbjct: 53  DLETGKRWEHKSNERFPLSSTFKTLACANVLQRVDLGKERIDRVVRFSESNLVTYSPVTE 112

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
               K   +  +   A ++ S N  +    + I G
Sbjct: 113 KHVGKKGMSLAELCQATLSTSDNSAANFILQAIGG 147


>gi|326572874|gb|EGE22859.1| peptidoglycan synthetase FtsI [Moraxella catarrhalis CO72]
          Length = 652

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 40/129 (31%), Gaps = 28/129 (21%)

Query: 48  LHAKPKYSSIVIDVNKNQMTG--------FKQDEPR--------------YPASLTKMMT 85
           L +    S +V+DV   ++                R               P S+ K  T
Sbjct: 330 LQSARSSSGMVVDVKTGEVLAMGSWPSFNSNNLSERDGANERNRPVLDVFEPGSVMKPFT 389

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
              +   L+S K   N+ I  S  + +       +++   +        LI +S+N  ST
Sbjct: 390 ---VAAALESGKYTTNSVIDTSPGSVSVGGYT--IRDGGNYGVITLDK-LIQKSSNVAST 443

Query: 146 AFGEFISGS 154
                +   
Sbjct: 444 KIALNLPTD 452


>gi|294777500|ref|ZP_06742951.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Bacteroides vulgatus PC510]
 gi|294448568|gb|EFG17117.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Bacteroides vulgatus PC510]
          Length = 466

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 20/90 (22%)

Query: 31  MGKILFLSIIMISMASELHAKP--------------KYSSI---VIDVNKNQMTGFKQDE 73
           M ++LF  ++++S+   ++A+P              K S +   V D+   +     QD+
Sbjct: 1   MKRVLFFFLLILSIHF-INAQPLSQRLDALLHEEVLKTSEVGIAVFDLTTGKSVYRYQDD 59

Query: 74  PRY-PASLTKMMTLYIIFEYLQSKKLHLNT 102
             Y PAS+ K++T       L +    ++T
Sbjct: 60  KLYRPASVEKIITSVTALAQLGA-DYTMDT 88


>gi|297564479|ref|YP_003683452.1| beta-lactamase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296848928|gb|ADH70946.1| beta-lactamase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 351

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 37  LSIIMISMASELHAKPKYS--SIVIDVNKNQMTGFKQDEPRY--PASLTKMMTLYIIFEY 92
           +S  +  +A+   AKP  S  S+ ++      +    D  R    AS+TK+ T+ ++ + 
Sbjct: 5   ISARLDGIAARYAAKPGVSLMSLAVEQPSTGFSWSHGDTGRPYFVASITKLYTVAMVMQL 64

Query: 93  LQSKKLHLNTQI 104
                L L+T +
Sbjct: 65  RDEGTLTLDTPV 76


>gi|90408305|ref|ZP_01216470.1| penicillin-binding protein 4 precursor (PBP-4) [Psychromonas sp.
          CNPT3]
 gi|90310606|gb|EAS38726.1| penicillin-binding protein 4 precursor (PBP-4) [Psychromonas sp.
          CNPT3]
          Length = 471

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 29 QLMGKILFLSIIMISMASEL----HAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKM 83
          +++    F S +  +   +L        + S +V+D    + +     +  R PAS+ K+
Sbjct: 3  KILVSFFFCSTLWANEWQDLERFLPPGTQLSYLVVDAATQKTVVSHHANTLRTPASVQKV 62

Query: 84 MTLY 87
          +T  
Sbjct: 63 LTAL 66


>gi|259120754|gb|ACV92002.1| extended spectrum beta-lactamase CTX-M-71 [Klebsiella pneumoniae]
          Length = 291

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|254966884|gb|ACT97462.1| putative beta-lactamase [uncultured organism]
          Length = 273

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 63/183 (34%), Gaps = 37/183 (20%)

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPS------KLYLKEKTYFTTEQGILALITRS 139
              + + +  + + L++ + +   A+   P+      K +  +    T  + +   I++S
Sbjct: 50  ALAVLDKMDKQSISLDSIVSI--KASQMPPNTYSPLRKKFPDQDFTITLRELMQYSISQS 107

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKI------------GMQNTIYKNASGLHDKNQ 187
            N+      E+  G        +++   ++            GM ++ ++          
Sbjct: 108 DNNACDILIEYAGG-----IKHINDYIHRLSIDSFNLSETEDGM-HSSFEAVY-----RN 156

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH--NKLLNKMH--NIDGIKTG 243
            +T      L     +   + +    ++ F ++  I T    NKL   +    + G KTG
Sbjct: 157 WSTPSAMVRLLRTADEK--ELFSNKELKDFLWQTMIDTETGANKLKGMLPAKTVVGHKTG 214

Query: 244 YTR 246
            + 
Sbjct: 215 SSD 217


>gi|160948461|emb|CAJ47138.2| beta-lactamase [Klebsiella pneumoniae]
          Length = 286

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 64/203 (31%), Gaps = 39/203 (19%)

Query: 25  QRNIQLMGKILFLSIIMISMASELHAK----------PKYSSIVIDVNKNQMT-GFKQDE 73
           +R I+L    L  ++ +   AS    +           +   I +D+   +    ++ DE
Sbjct: 1   KRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQI-----------PVSKTAATQNPSKLYLKE 122
                S  K++    +   + +    L  +I           PVS+          +L +
Sbjct: 61  RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEK---------HLAD 111

Query: 123 KTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNAS 180
               T  +   A IT S N  +      + G      F   + +   ++    T    A 
Sbjct: 112 G--MTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEAL 169

Query: 181 GLHDKNQITTARDQAILGILLRK 203
               ++  T A     +   LRK
Sbjct: 170 PGDARDTTTPA----SMAATLRK 188


>gi|58040557|ref|YP_192521.1| putative beta-lactamase [Gluconobacter oxydans 621H]
 gi|58002971|gb|AAW61865.1| Putative beta-lactamase [Gluconobacter oxydans 621H]
          Length = 394

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 77  PASLTK-MMTLYIIFEYLQSKKLHLNTQI 104
            ASLTK  MT   + + ++ +KLHL+ ++
Sbjct: 95  MASLTKPTMTALAVMQLVEQQKLHLDDRV 123


>gi|254229042|ref|ZP_04922462.1| beta-lactamase [Vibrio sp. Ex25]
 gi|151938333|gb|EDN57171.1| beta-lactamase [Vibrio sp. Ex25]
          Length = 242

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 2/112 (1%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119
           D   ++   ++ DE     S  K +    +   + S KL  N    + + +       + 
Sbjct: 2   DTQTDERWDYRGDERFPLMSTFKTLACATMLSDMDSGKLSKNATAKIDERSIVVWSPVMD 61

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
                    E    A +  S N  +      I G +    F   + +KA ++
Sbjct: 62  KLAGQSTRVEHACEAAMLMSDNTAANLVLNEIGGPKAVTMFLRSIGDKATRL 113


>gi|330882886|gb|EGH17035.1| beta-lactamase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 328

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           ASLTK++T  ++    +   L L T + 
Sbjct: 64  ASLTKLLTSVVVLRLCEQGILDLKTSVT 91


>gi|323706377|ref|ZP_08117941.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534271|gb|EGB24058.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 418

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 20/171 (11%)

Query: 59  IDVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKLHLNTQIP-VSKTAATQNPS 116
           ID+N  +       +    AS  K+ +  Y+ +  +   KL  N ++   S+     + S
Sbjct: 193 IDLNSGETFDINGYDSFIAASTYKVPLNFYV-YTLITEGKLDPNMEVQYTSQDYEGGSGS 251

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTI 175
             Y    TY+T  +     I  S N  S      +   +   F          +G     
Sbjct: 252 IQYDPVGTYYTIRELSKKSIEESDNIASNMLMRVVGYDNYLNFIE-------SLGA---- 300

Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN 226
           Y         + +T+ RD +I    +  N+   +   +     Y    I N
Sbjct: 301 YVIPY----SDNVTSPRDLSIYMEDIL-NYANAHSSTAGELLSYLENTIYN 346


>gi|320328481|gb|EFW84483.1| beta-lactamase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 397

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           ASLTK++T  ++    +   L L T + 
Sbjct: 64  ASLTKLLTSVVVLRLCEQGILDLKTSVT 91


>gi|312959134|ref|ZP_07773653.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Pseudomonas fluorescens WH6]
 gi|311286904|gb|EFQ65466.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Pseudomonas fluorescens WH6]
          Length = 511

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 6/68 (8%)

Query: 30  LMGKILFLSIIMISMASELHAKPK-----YSSIVIDVNKNQMTGFKQDEPRY-PASLTKM 83
           L+     +S    +   +L A P       S +V D              R  PAS  K+
Sbjct: 46  LLAGCASVSPSSTATLDQLLADPALNGATVSLMVRDARSGDTLYQHNPHTRLVPASNLKL 105

Query: 84  MTLYIIFE 91
           +T     E
Sbjct: 106 LTTAAAME 113


>gi|281335904|gb|ADA62509.1| CTX-M-15-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|71734982|ref|YP_274619.1| beta-lactamase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555535|gb|AAZ34746.1| beta-lactamase [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 397

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           ASLTK++T  ++    +   L L T + 
Sbjct: 64  ASLTKLLTSVVVLRLCEQGILDLKTSVT 91


>gi|312129079|ref|YP_003996419.1| beta-lactamase [Leadbetterella byssophila DSM 17132]
 gi|311905625|gb|ADQ16066.1| beta-lactamase [Leadbetterella byssophila DSM 17132]
          Length = 383

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 17/27 (62%)

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           S+TKM T  +I + +++  + L+ ++ 
Sbjct: 98  SVTKMYTAALILKLVENGLIDLDDKVT 124


>gi|309810906|ref|ZP_07704707.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Dermacoccus sp. Ellin185]
 gi|308435212|gb|EFP59043.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Dermacoccus sp. Ellin185]
          Length = 465

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 8/72 (11%)

Query: 60  DVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           D +   +           PAS+TK+ + +     +   +L L+  +    T AT   S +
Sbjct: 98  DASTGTVLYEHDSSKATTPASVTKLASAF----AIAHSELDLDKGLT---TRATLEGSTV 150

Query: 119 YLKEKTYFTTEQ 130
            L      T  +
Sbjct: 151 ELVAGGDMTLAE 162


>gi|281335960|gb|ADA62537.1| CTX-M-28-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|34559246|gb|AAQ75379.1| beta-lactamase OXY-2b [Klebsiella oxytoca]
 gi|48473857|emb|CAG34107.1| class A beta-lactamase [Klebsiella oxytoca]
          Length = 290

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 52/136 (38%), Gaps = 11/136 (8%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 55  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNT 174
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++    +
Sbjct: 112 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTES 169

Query: 175 IYKNASGLHDKNQITT 190
               A    +++  T 
Sbjct: 170 TLNTAIPGDERDTSTP 185


>gi|330470519|ref|YP_004408262.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Verrucosispora maris AB-18-032]
 gi|328813490|gb|AEB47662.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Verrucosispora maris AB-18-032]
          Length = 553

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 9/103 (8%)

Query: 58  VIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           V D    Q    +       PAS+TK++T   +             +IP +  A  Q   
Sbjct: 159 VTDALTGQQLFERGGGTGTVPASVTKLLTAVTVLTARGPGY-----RIPTTAVAGAQPGE 213

Query: 117 KLYLKEKTYFTTEQGILALI--TRSANDVSTAFGEFISGSEKK 157
            + +      T   G         S  D++      + G+   
Sbjct: 214 VVLVGGGD-PTLAAGPKGFYPGAASLEDLAEQVRTALGGTAPT 255


>gi|295345508|gb|ADG01902.1| CTX-M-15 [Pantoea agglomerans]
          Length = 293

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 58  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 116

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 117 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 167


>gi|293553243|ref|ZP_06673880.1| beta-lactamase [Enterococcus faecium E1039]
 gi|291602653|gb|EFF32868.1| beta-lactamase [Enterococcus faecium E1039]
          Length = 386

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQI 104
           S+ K MT  +I + +QS K+  +T++
Sbjct: 116 SIQKAMTALLILKQIQSGKITFDTKL 141


>gi|282852869|ref|ZP_06262210.1| conserved domain protein [Lactobacillus gasseri 224-1]
 gi|282555977|gb|EFB61598.1| conserved domain protein [Lactobacillus gasseri 224-1]
          Length = 75

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 53 KYSSIVIDVNKNQMTGFKQDEPRY 76
            S+I ID+   Q+   K  +  Y
Sbjct: 45 AKSAIAIDLKSGQVLYAKNADKNY 68


>gi|281335930|gb|ADA62522.1| CTX-M-3-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|170676134|gb|ACB30322.1| CTX-M-28 beta lactamase [Escherichia coli]
 gi|170676136|gb|ACB30323.1| CTX-M-28 beta lactamase [Klebsiella pneumoniae]
 gi|170676138|gb|ACB30324.1| CTX-M-28 beta lactamase [Klebsiella pneumoniae]
 gi|170676140|gb|ACB30325.1| CTX-M-28 beta lactamase [Enterobacter sp. O050109]
          Length = 290

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 55  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 113

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 114 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 164


>gi|146278653|ref|YP_001168812.1| ROK family protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145556894|gb|ABP71507.1| ROK family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 425

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 46/166 (27%), Gaps = 45/166 (27%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRY----PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           S++V+D    ++     +E R     PASL        + E        L  ++      
Sbjct: 114 SAVVMDFA-GRLLAEHHEERRPVALAPASL------LAVLE-------TLLDRVTAKAGL 159

Query: 111 ATQNPSKLYLKEKTYF---------------------TTEQGILALITRSANDV---STA 146
           A Q  + + +    Y                            L L  +  ND    + A
Sbjct: 160 ARQELAAVGIGLPGYVDSTGGRVLWSSILAERDVPLGRLATERLGLPVQVDNDANLCAMA 219

Query: 147 -FGEFISGSEKKFAILMSNKAKKIGMQNTI--YKNASGLHDKNQIT 189
                       F ++       +GM      ++ A G+  +   T
Sbjct: 220 ELWFGAGRRLSDFVVVTIEHGLGMGMVTNHRIFRGARGIGMELGHT 265


>gi|281335910|gb|ADA62512.1| CTX-M-22-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|257893579|ref|ZP_05673232.1| beta-lactamase [Enterococcus faecium 1,231,408]
 gi|260560510|ref|ZP_05832684.1| beta-lactamase [Enterococcus faecium C68]
 gi|293563596|ref|ZP_06678042.1| beta-lactamase [Enterococcus faecium E1162]
 gi|294615285|ref|ZP_06695161.1| beta-lactamase [Enterococcus faecium E1636]
 gi|294619050|ref|ZP_06698545.1| beta-lactamase [Enterococcus faecium E1679]
 gi|314939783|ref|ZP_07847003.1| beta-lactamase [Enterococcus faecium TX0133a04]
 gi|314942022|ref|ZP_07848882.1| beta-lactamase [Enterococcus faecium TX0133C]
 gi|314950016|ref|ZP_07853309.1| beta-lactamase [Enterococcus faecium TX0082]
 gi|314953538|ref|ZP_07856450.1| beta-lactamase [Enterococcus faecium TX0133A]
 gi|314992153|ref|ZP_07857600.1| beta-lactamase [Enterococcus faecium TX0133B]
 gi|314995127|ref|ZP_07860243.1| beta-lactamase [Enterococcus faecium TX0133a01]
 gi|257829958|gb|EEV56565.1| beta-lactamase [Enterococcus faecium 1,231,408]
 gi|260073512|gb|EEW61840.1| beta-lactamase [Enterococcus faecium C68]
 gi|291591843|gb|EFF23476.1| beta-lactamase [Enterococcus faecium E1636]
 gi|291594711|gb|EFF26093.1| beta-lactamase [Enterococcus faecium E1679]
 gi|291604446|gb|EFF33934.1| beta-lactamase [Enterococcus faecium E1162]
 gi|313590618|gb|EFR69463.1| beta-lactamase [Enterococcus faecium TX0133a01]
 gi|313593294|gb|EFR72139.1| beta-lactamase [Enterococcus faecium TX0133B]
 gi|313594461|gb|EFR73306.1| beta-lactamase [Enterococcus faecium TX0133A]
 gi|313599199|gb|EFR78044.1| beta-lactamase [Enterococcus faecium TX0133C]
 gi|313640923|gb|EFS05503.1| beta-lactamase [Enterococcus faecium TX0133a04]
 gi|313643663|gb|EFS08243.1| beta-lactamase [Enterococcus faecium TX0082]
          Length = 386

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQI 104
           S+ K MT  +I + +QS K+  +T++
Sbjct: 116 SIQKAMTALLILKQIQSGKITFDTKL 141


>gi|257885235|ref|ZP_05664888.1| beta-lactamase [Enterococcus faecium 1,231,501]
 gi|293569324|ref|ZP_06680622.1| beta-lactamase [Enterococcus faecium E1071]
 gi|257821087|gb|EEV48221.1| beta-lactamase [Enterococcus faecium 1,231,501]
 gi|291588030|gb|EFF19880.1| beta-lactamase [Enterococcus faecium E1071]
          Length = 386

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQI 104
           S+ K MT  +I + +QS K+  +T++
Sbjct: 116 SIQKAMTALLILKQIQSGKITFDTKL 141


>gi|171914658|ref|ZP_02930128.1| beta-lactamase [Verrucomicrobium spinosum DSM 4136]
          Length = 403

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 16/87 (18%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFK--------------QDEPRYPASLTK 82
           LS I  S+   +  +    ++ + VNK+Q+   +              +D   + AS+TK
Sbjct: 26  LSPIAASLRPFVADQTISGAVALVVNKDQILSLEALGQADLAVKKPMTEDAMFWIASMTK 85

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKT 109
            MT   +   ++  K+ ++   PVSK 
Sbjct: 86  PMTAMGVMMLVEEGKVEVDA--PVSKY 110


>gi|289178275|gb|ADC85521.1| D-alanyl-meso-diaminopimelate endopeptidase [Bifidobacterium
           animalis subsp. lactis BB-12]
          Length = 495

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 7/102 (6%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV---- 106
           P  S+I++  +   +      D  R PAS  K +T       L            +    
Sbjct: 111 PDVSAIIMQAD-GTVVADHAADVAREPASTMKTLTSLAAASVLDMGDTLPTQTFLLQAEQ 169

Query: 107 -SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
            + T   +    + L             A +   A + + A 
Sbjct: 170 GTDTVVIKGNGDMLLGAGDSDPDHVNGRAGLLTLAKNTAHAL 211


>gi|195975933|gb|ABW86620.2| beta-lactamase blaCTX-M [Klebsiella pneumoniae]
          Length = 291

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|322368439|ref|ZP_08043008.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Haladaptatus paucihalophilus DX253]
 gi|320552455|gb|EFW94100.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Haladaptatus paucihalophilus DX253]
          Length = 426

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 13/65 (20%)

Query: 41 MISMASELHAKPKYSSIVIDVNK-----------NQMTGFKQ-DEPRYPASLTKMMTLYI 88
          M + AS   A   ++ I+ D +              +   +  D P  PAS TK++T  +
Sbjct: 5  MDADASTPDADAPHTDIL-DSDSFVTSVLARERGGSVLASRNPDVPLPPASNTKLLTAAL 63

Query: 89 IFEYL 93
             +L
Sbjct: 64 SLHHL 68


>gi|313509545|gb|ADR66026.1| beta-lactamase CTX-M-15 [Escherichia coli]
          Length = 262

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  + I A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELIAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|261209027|ref|ZP_05923432.1| beta-lactamase [Enterococcus faecium TC 6]
 gi|289565161|ref|ZP_06445613.1| beta-lactamase [Enterococcus faecium D344SRF]
 gi|260077066|gb|EEW64788.1| beta-lactamase [Enterococcus faecium TC 6]
 gi|289162982|gb|EFD10830.1| beta-lactamase [Enterococcus faecium D344SRF]
          Length = 386

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQI 104
           S+ K MT  +I + +QS K+  +T++
Sbjct: 116 SIQKAMTALLILKQIQSGKITFDTKL 141


>gi|238801268|gb|ACR56347.1| beta-lactamase CTX-M-28 [Klebsiella pneumoniae]
          Length = 284

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|284035477|ref|YP_003385407.1| beta-lactamase [Spirosoma linguale DSM 74]
 gi|283814770|gb|ADB36608.1| beta-lactamase [Spirosoma linguale DSM 74]
          Length = 578

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 27/101 (26%)

Query: 31  MGKILFLSIIMISMASELHAKPKY------------SSIVIDVNKNQMTGFK-------- 70
           +  ++FL + +   A    AK                S+++   K Q+   K        
Sbjct: 10  LSALVFLLVSIAGFAQTKSAKIDALVQQYVANRQFNGSVLV-AEKGQVIFKKGYGMANME 68

Query: 71  ------QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
                  D      S+TK  T  +I + ++  KL L  +I 
Sbjct: 69  WNIPNAPDTKFRLGSITKQFTAMLIMQLVEKGKLKLTGKIT 109


>gi|227018498|gb|ACP18863.1| CTX-M beta-lactamase [Salmonella enterica subsp. enterica serovar
           Infantis]
          Length = 291

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|94502821|gb|ABF29639.1| beta-lactamase [Escherichia coli]
          Length = 220

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 24  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 82

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 83  HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 133


>gi|7649306|gb|AAF65843.1| cefotaxime-hydrolyzing beta-lactamase [Escherichia coli]
 gi|49823169|gb|AAT68658.1| CTX-M-10 [Klebsiella pneumoniae]
          Length = 291

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|305666806|ref|YP_003863093.1| alkaline D-peptidase and alkaline D-peptidase fusion [Maribacter
           sp. HTCC2170]
 gi|88709030|gb|EAR01264.1| alkaline D-peptidase and alkaline D-peptidase fusion [Maribacter
           sp. HTCC2170]
          Length = 348

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
           +++P + AS TK+ +  II +      L L+ +  +S        S L++ E   ++   
Sbjct: 44  KNQPYFIASTTKLFSTAIILKLKAENVLKLDDK--ISNYIDKSILSTLHIYEGKEYSERI 101

Query: 131 GILALITRSA 140
            I  L+  ++
Sbjct: 102 LIKHLLAHTS 111


>gi|281335950|gb|ADA62532.1| CTX-M-1 group beta-lactamase [synthetic construct]
          Length = 291

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|297201396|ref|ZP_06918793.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Streptomyces sviceus ATCC 29083]
 gi|197713804|gb|EDY57838.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Streptomyces sviceus ATCC 29083]
          Length = 458

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 53  KYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYL 93
           ++++ V+DV   +            PAS TK+ T       L
Sbjct: 94  RHTAAVVDVASGRRLYGAGAGTALIPASTTKIATAVAALSAL 135


>gi|90421980|ref|YP_530350.1| beta-lactamase [Rhodopseudomonas palustris BisB18]
 gi|90103994|gb|ABD86031.1| beta-lactamase [Rhodopseudomonas palustris BisB18]
          Length = 395

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           D   + AS+TK +T     + ++  KL L+  I
Sbjct: 53  DSVFWIASMTKAITAAAAMQLVEQGKLSLDQPI 85


>gi|310822159|ref|YP_003954517.1| d-alanyl-d-alanine
           carboxypeptidase/d-alanyl-d-alanine-endopeptidase
           [Stigmatella aurantiaca DW4/3-1]
 gi|309395231|gb|ADO72690.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Stigmatella aurantiaca DW4/3-1]
          Length = 493

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 21/88 (23%)

Query: 41  MISMASELHAK-----PKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMM---TLY---- 87
           + ++A EL A          ++V+D    +     ++  R  PAS  K++   +      
Sbjct: 30  LPAVAQELLAAIEQEGALAGALVVDAQTGRALFAHRERVRLLPASTMKLVSTSSALATLG 89

Query: 88  --------IIFEYLQSKKLHLNTQIPVS 107
                   ++ E      L     + VS
Sbjct: 90  PDFRFVTPVLLEGTHQGALFEGDVVVVS 117


>gi|302535222|ref|ZP_07287564.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Streptomyces sp. C]
 gi|302444117|gb|EFL15933.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Streptomyces sp. C]
          Length = 484

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 53  KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKM 83
              + VIDV   Q+       +P  PAS  K+
Sbjct: 115 ARGASVIDVATGQVLYESGAGDPMTPASTIKI 146


>gi|41056931|ref|NP_957562.1| hypothetical protein pC15-1a_016 [Escherichia coli]
 gi|256367639|ref|YP_003108206.1| blaCTX-M-15 [Escherichia coli]
 gi|291289023|ref|YP_003517526.1| beta-lactamase [Klebsiella pneumoniae]
 gi|324120107|ref|YP_004249868.1| CTX-M-15 beta-lactamase [Klebsiella pneumoniae]
 gi|12232328|gb|AAG48377.1| beta-lactamase UOE-1 [Escherichia coli]
 gi|15636730|gb|AAL02127.1| beta-lactamase [Escherichia coli]
 gi|20145492|emb|CAC84572.1| cefotaxime-hydrolyzing beta-lactamase, CTX-M-11 [Escherichia coli]
 gi|38606068|gb|AAR25032.1| CTX-M-15 [Escherichia coli]
 gi|38640800|gb|AAR26004.1| CTX-M-15 [Escherichia coli]
 gi|39545938|gb|AAR28032.1| beta-lactamase CTX-M-15 [Escherichia coli]
 gi|48994622|gb|AAT48020.1| CTX-M-15 beta-lactamase [Escherichia coli]
 gi|48994628|gb|AAT48025.1| CTX-M-15 beta-lactamase [Escherichia coli]
 gi|63029820|gb|AAY27811.1| beta-lactamase CTX-M-15 [Escherichia coli]
 gi|66474797|gb|AAY46940.1| extended-spectrum beta-lactamase CTX-M-15 [Klebsiella pneumoniae]
 gi|71273532|emb|CAJ13638.1| beta-lactamase [Escherichia coli]
 gi|82393680|gb|AAY46939.1| extended-spectrum beta-lactamase CTX-M-15 [Klebsiella pneumoniae]
 gi|83356019|gb|ABC16604.1| extended-spectrum beta-lactamase CTX-M-15 [Enterobacter cloacae]
 gi|83356021|gb|ABC16605.1| extended-spectrum beta-lactamase CTX-M-15 [Klebsiella pneumoniae]
 gi|85681941|gb|ABC73077.1| extended-spectrum beta-lactamase CTX-M-15 [Escherichia coli]
 gi|92428672|gb|ABE76829.1| CTX-M-15 beta-lactamase [Klebsiella pneumoniae]
 gi|92428674|gb|ABE76830.1| CTX-M-15 beta-lactamase [Escherichia coli]
 gi|116643123|gb|ABK06381.1| beta-lactamase bla-CTX-M-15 [Escherichia coli]
 gi|164665320|gb|ABY66122.1| CTX-m-3-like beta-lactamase [Escherichia coli]
 gi|189172076|gb|ACD80393.1| CTX-M-15 beta-lactamase [Klebsiella pneumoniae]
 gi|224381576|gb|ACN41909.1| CTX-M15 beta-lactamase [Salmonella enterica subsp. enterica serovar
           Bonn]
 gi|224381578|gb|ACN41910.1| CTX-M15 beta-lactamase [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|224579164|gb|ACN58169.1| CTX-M-15 extended-spectrum beta-lactamase [Escherichia coli]
 gi|224799002|gb|ACN62990.1| CTX-M-15 beta-lactamase [Salmonella enterica subsp. enterica
           serovar Enteritidis]
 gi|225579692|gb|ACN94015.1| beta-lactamase blaCTX-M-15 [Klebsiella pneumoniae]
 gi|225579700|gb|ACN94019.1| beta-lactamase blaCTX-M-15 [Klebsiella pneumoniae]
 gi|225579706|gb|ACN94022.1| beta-lactamase blaCTX-M-15 [Klebsiella pneumoniae]
 gi|225579708|gb|ACN94023.1| beta-lactamase blaCTX-M-15 [Klebsiella pneumoniae]
 gi|225579714|gb|ACN94026.1| beta-lactamase blaCTX-M-15 [Klebsiella pneumoniae]
 gi|225579716|gb|ACN94027.1| beta-lactamase blaCTX-M-15 [Klebsiella pneumoniae]
 gi|225579720|gb|ACN94029.1| beta-lactamase blaCTX-M-15 [Klebsiella pneumoniae]
 gi|225579722|gb|ACN94030.1| beta-lactamase blaCTX-M-15 [Klebsiella pneumoniae]
 gi|225579726|gb|ACN94032.1| beta-lactamase blaCTX-M-15 [Klebsiella pneumoniae]
 gi|225579728|gb|ACN94033.1| beta-lactamase blaCTX-M-15 [Klebsiella pneumoniae]
 gi|225579732|gb|ACN94035.1| beta-lactamase blaCTX-M-15 [Klebsiella pneumoniae]
 gi|225579738|gb|ACN94038.1| beta-lactamase blaCTX-M-15 [Klebsiella pneumoniae]
 gi|228480576|gb|ACQ41904.1| blaCTX-M-15 [Escherichia coli]
 gi|254927438|gb|ACT85952.1| beta-lactamase CTX-M-15 [Escherichia coli]
 gi|254966772|gb|ACT97388.1| CTX-M-15 beta-lactamase [mixed culture bacterium AX_gF1DD01_02]
 gi|254966897|gb|ACT97470.1| CTX-M-15 beta-lactamase [mixed culture bacterium CA_gF1DD01_03]
 gi|254966905|gb|ACT97475.1| CTX-M-15 beta-lactamase [mixed culture bacterium CA_gF1DD01_14]
 gi|254966907|gb|ACT97476.1| CTX-M-15 beta-lactamase [mixed culture bacterium CA_gF1DD01_15]
 gi|254966954|gb|ACT97506.1| CTX-M-15 beta-lactamase [mixed culture bacterium CF_gF2-3DD01_01]
 gi|254967173|gb|ACT97636.1| CTX-M-15 beta-lactamase [mixed culture bacterium PE_gF1DD01_14]
 gi|254967204|gb|ACT97656.1| CTX-M-15 beta-lactamase [uncultured organism]
 gi|256956391|gb|ACV32734.1| beta-lactamase CTX-M15 [Escherichia coli]
 gi|256956413|gb|ACV32752.1| beta-lactamase CTX-M15 [Escherichia coli]
 gi|256956416|gb|ACV32754.1| beta-lactamase CTX-M15 [Escherichia coli]
 gi|256956428|gb|ACV32764.1| beta-lactamase [Escherichia coli]
 gi|260914766|gb|ACX54236.1| beta-lactamase CTX-M-15 [Escherichia coli]
 gi|290792154|gb|ADD63480.1| beta-lactamase [Klebsiella pneumoniae]
 gi|297598717|gb|ADI48249.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|300250868|gb|ADJ95777.1| beta-lactamase CTX-M-15 [Enterobacter cloacae]
 gi|308194910|gb|ADO16967.1| beta-lactamase CTX-M-15 [Escherichia coli]
 gi|308194914|gb|ADO16970.1| beta-lactamase CTX-M-15 [Escherichia coli]
 gi|308194918|gb|ADO16973.1| beta-lactamase CTX-M-15 [Escherichia coli]
 gi|308194922|gb|ADO16976.1| beta-lactamase CTX-M-15 [Escherichia coli]
 gi|308194926|gb|ADO16979.1| beta-lactamase CTX-M-15 [Escherichia coli]
 gi|323388235|gb|ADX60384.1| CTX-M-15 beta-lactamase [Klebsiella pneumoniae]
 gi|324036013|gb|ADY17598.1| beta-lactamase CTX-M-15 [Enterobacter cloacae]
 gi|324036017|gb|ADY17601.1| beta-lactamase CTX-M-15 [Enterobacter cloacae]
 gi|324036021|gb|ADY17604.1| beta-lactamase CTX-M-15 [Citrobacter freundii]
 gi|324036025|gb|ADY17607.1| beta-lactamase CTX-M-15 [Enterobacter cloacae]
 gi|324036029|gb|ADY17610.1| beta-lactamase CTX-M-15 [Enterobacter aerogenes]
          Length = 291

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|326569938|gb|EGE19985.1| peptidoglycan synthetase FtsI [Moraxella catarrhalis BC1]
          Length = 652

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 40/129 (31%), Gaps = 28/129 (21%)

Query: 48  LHAKPKYSSIVIDVNKNQMTG--------FKQDEPR--------------YPASLTKMMT 85
           L +    S +V+DV   ++                R               P S+ K  T
Sbjct: 330 LQSARSSSGMVVDVKTGEVLAMGSWPSFNSNNLSERDGANERNRPVLDVFEPGSVMKPFT 389

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
              +   L+S K   N+ I  S  + +       +++   +        LI +S+N  ST
Sbjct: 390 ---VAAALESGKYTTNSVIDTSPGSVSVGGYT--IRDGGNYGVITLDK-LIQKSSNVAST 443

Query: 146 AFGEFISGS 154
                +   
Sbjct: 444 KIALNLPTD 452


>gi|219682963|ref|YP_002469346.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|219620613|gb|ACL28770.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Bifidobacterium animalis subsp. lactis AD011]
          Length = 481

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 7/102 (6%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV---- 106
           P  S+I++  +   +      D  R PAS  K +T       L            +    
Sbjct: 97  PDVSAIIMQAD-GTVVADHAADVAREPASTMKTLTSLAAASVLDMGDTLPTQTFLLQAEQ 155

Query: 107 -SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
            + T   +    + L             A +   A + + A 
Sbjct: 156 GTDTVVIKGNGDMLLGAGDSDPDHVNGRAGLLTLAKNTAHAL 197


>gi|124021062|gb|ABM88811.1| extended-spectrum beta-lactamase CTX-M-15 [Escherichia coli]
          Length = 290

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|281335972|gb|ADA62543.1| CTX-M-1 group beta-lactamase [synthetic construct]
          Length = 291

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|281335900|gb|ADA62507.1| CTX-M-1 group beta-lactamase [synthetic construct]
          Length = 291

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|257359515|gb|ACV53157.1| beta-lactamase SHV-121 [Klebsiella pneumoniae]
 gi|283135094|dbj|BAI65841.1| SHV 121 betalactamase [Klebsiella pneumoniae subsp. pneumoniae]
          Length = 286

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 64/202 (31%), Gaps = 39/202 (19%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAK----------PKYSSIVIDVNKNQMT-GFKQDEP 74
           R I+L    L  ++ ++  AS    +           +   I +D+   +    ++ DE 
Sbjct: 2   RYIRLCIISLLAALPLVVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADER 61

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQI-----------PVSKTAATQNPSKLYLKEK 123
               S  K++    +   + +    L  +I           PVS+          +L + 
Sbjct: 62  FPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEK---------HLADG 112

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNASG 181
              T  +   A IT S N  +      + G      F   + +   ++    T    A  
Sbjct: 113 --MTVGELCAAAITVSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALP 170

Query: 182 LHDKNQITTARDQAILGILLRK 203
              ++  T A     +   LRK
Sbjct: 171 GDARDTTTPA----SMAATLRK 188


>gi|219920907|emb|CAQ76631.1| beta-lactamase [Klebsiella oxytoca]
          Length = 274

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 55  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 112 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 164


>gi|182414977|ref|YP_001820043.1| beta-lactamase [Opitutus terrae PB90-1]
 gi|177842191|gb|ACB76443.1| beta-lactamase [Opitutus terrae PB90-1]
          Length = 862

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/77 (11%), Positives = 28/77 (36%), Gaps = 17/77 (22%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFK--------------QDEPRYPASLTKMMTL 86
           + ++  + H      ++ +D    ++   +               D      S++KM+T 
Sbjct: 21  LPALLEKWHIPGATVAVAVD---GRIIFARGYGFADPEAGRPMQPDTRMRIGSISKMLTA 77

Query: 87  YIIFEYLQSKKLHLNTQ 103
             + + ++  +L L  +
Sbjct: 78  AAVLKLVEDGRLSLQDR 94


>gi|299783571|gb|ADJ41569.1| Putative uncharacterized protein [Lactobacillus fermentum CECT
           5716]
          Length = 306

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 39/122 (31%)

Query: 78  ASLTKM--MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           AS  K+  MT  ++          LN                         T  +   A+
Sbjct: 116 ASTVKVGVMTALLL-----DNNGQLND------------------------TENELAQAM 146

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
           I  S ND ++   E   GS++    +      +IGM +T  ++  GL      TTA DQ 
Sbjct: 147 IENSDNDATSTLFENYIGSKEGLQKVY----DEIGMTHTKVRSEWGLT----TTTAADQV 198

Query: 196 IL 197
            L
Sbjct: 199 KL 200


>gi|281335926|gb|ADA62520.1| CTX-M-62-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|238801224|gb|ACR56331.1| extended-spectrum beta-lactamase CTX-M-89 [Enterobacter cloacae]
          Length = 291

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|219920937|emb|CAQ76646.1| beta-lactamase [Klebsiella oxytoca]
          Length = 274

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 55  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 112 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 164


>gi|159038984|ref|YP_001538237.1| peptidoglycan glycosyltransferase [Salinispora arenicola CNS-205]
 gi|157917819|gb|ABV99246.1| Peptidoglycan glycosyltransferase [Salinispora arenicola CNS-205]
          Length = 716

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 47/140 (33%), Gaps = 29/140 (20%)

Query: 39  IIMISMASELHAK--PKYSSIVIDVNKNQMTGF-----------KQDEP----------- 74
           I+ + +A  + A      +++V++V   ++              ++ +P           
Sbjct: 370 IVQVQLAEAMAAAKGSTGAAVVLEVGTGEVLAQASYPTYDARNWQESDPADRDDVATGFV 429

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA 134
             P S+ K          LQ   +  +T +P+   A  +     +   +     +  +  
Sbjct: 430 IEPGSVHK---AITFGAALQEGVITPDTTLPI-ANAVRR-GDTAFTDTRRANGQQMSLAG 484

Query: 135 LITRSANDVSTAFGEFISGS 154
           ++  S+N  + A  + +   
Sbjct: 485 MMAYSSNVGTIAIADQLGPD 504


>gi|56554773|gb|AAV97957.1| CTX-M type extended spectrum beta-lactamase [Klebsiella pneumoniae]
          Length = 291

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|28881688|emb|CAD70280.1| class A beta-lactamase CTX-M-28 [Escherichia coli]
 gi|71273535|emb|CAJ13561.1| beta-lactamase [Escherichia coli]
 gi|151428368|gb|ABS12043.1| CTX-M beta-lactamase [Escherichia coli]
 gi|156145812|gb|ABU53682.1| CTX-M-15 beta-lactamase [Escherichia coli]
 gi|281335916|gb|ADA62515.1| CTX-M-28 beta-lactamase [synthetic construct]
          Length = 291

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|150015885|ref|YP_001308139.1| beta-lactamase, [Clostridium beijerinckii NCIMB 8052]
 gi|149902350|gb|ABR33183.1| beta-lactamase, putative [Clostridium beijerinckii NCIMB 8052]
          Length = 258

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 55/149 (36%), Gaps = 15/149 (10%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119
           D+      G+ ++     A   K+     I +++Q        +I + +         L+
Sbjct: 21  DLESGFSYGYNENVQMTSAGCMKLPIAVSIIKHVQEGNSTFLDKIKIEEEDKVYGTGILH 80

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
             +   +T  + ++A++ +S N  +    + +          +++  +  G++NT     
Sbjct: 81  EFDNREYTIFELLVAMLIQSDNTAANKLIDIVG------IDKINDDIEAQGLKNTKLNRK 134

Query: 180 SGLHDK-------NQITTARDQAILGILL 201
           +   D+         IT+A D + +   L
Sbjct: 135 T--SDERAVSNGIENITSALDLSKIWKHL 161


>gi|226329802|ref|ZP_03805320.1| hypothetical protein PROPEN_03714 [Proteus penneri ATCC 35198]
 gi|225200597|gb|EEG82951.1| hypothetical protein PROPEN_03714 [Proteus penneri ATCC 35198]
          Length = 259

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 48/112 (42%), Gaps = 7/112 (6%)

Query: 62  NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV--SKTAATQNPSKLY 119
           + +Q+T  + +E    AS +K+M +  + +  + +   L+  I +  S   A    ++ +
Sbjct: 20  DNSQITY-RGEERFAMASTSKVMAVAAVLKESEKQAGLLDKNIAIKKSDLVAYSPITEKH 78

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
           L      +  Q   A +  S N       +++ G  S  +FA  +++   ++
Sbjct: 79  LVTG--MSLAQLSAATLQYSDNTAMNKILDYLGGPSSVTQFARSINDVTYRL 128


>gi|27383434|ref|NP_774964.1| ES-beta-lactamase [Citrobacter freundii]
 gi|190410425|ref|YP_001965928.1| CTX-M-3 extended-spectrum beta-lactamase [Klebsiella pneumoniae]
 gi|216967815|ref|YP_002333323.1| beta-lactamase CTX-M3 [Klebsiella pneumoniae]
 gi|256367540|ref|YP_003108099.1| beta-lactamase CTX-M-3 precursor [Escherichia coli]
 gi|2765065|emb|CAA71321.1| ES-beta-lactamase [Citrobacter freundii]
 gi|13560279|dbj|BAB40925.1| CTX-M-3 type beta-lactamase [Citrobacter koseri]
 gi|27261287|gb|AAN87628.1| ES-beta-lactamase [Citrobacter freundii]
 gi|31096322|gb|AAP43781.1| beta-lactamase CTX-M-3 [Klebsiella pneumoniae]
 gi|39984736|gb|AAR36116.1| extended-spectrum beta-lactamase CTX-M-3 [Klebsiella pneumoniae]
 gi|45535499|emb|CAG14930.1| beta-lactamase CTX-M-3 [Kluyvera ascorbata]
 gi|47496744|dbj|BAD20193.1| CTX-M-3 type beta-lactamase [Salmonella enterica subsp. enterica
           serovar Senftenberg]
 gi|50789185|dbj|BAD34467.1| beta-lactamase [Citrobacter freundii]
 gi|50789187|dbj|BAD34468.1| beta-lactamase [Citrobacter koseri]
 gi|50789190|dbj|BAD34469.1| beta-lactamase [Enterobacter aerogenes]
 gi|50789192|dbj|BAD34470.1| beta-lactamase [Enterobacter cloacae]
 gi|50789195|dbj|BAD34471.1| beta-lactamase [Klebsiella pneumoniae]
 gi|50789197|dbj|BAD34472.1| beta-lactamase [Serratia marcescens]
 gi|50789200|dbj|BAD34473.1| beta-lactamase [Klebsiella oxytoca]
 gi|50789202|dbj|BAD34474.1| beta-lactamase [Escherichia coli]
 gi|50789204|dbj|BAD34475.1| beta-lactamase [Escherichia coli]
 gi|54292585|gb|AAV32431.1| beta-lactamase [Escherichia coli]
 gi|70671424|emb|CAJ01336.1| CTX-M-3 beta-lactamase [Serratia marcescens]
 gi|70671427|emb|CAJ01338.1| beta-lactamase CTX-M-3 [Klebsiella pneumoniae]
 gi|70671437|emb|CAJ01346.1| beta-lactamase CTX-M-3 [Klebsiella pneumoniae]
 gi|70671443|emb|CAJ01351.1| beta-lactamase CTX-M-3 [Proteus mirabilis]
 gi|71979779|dbj|BAE17045.1| beta-lactamase CTX-M-3 [Escherichia coli]
 gi|71979781|dbj|BAE17046.1| beta-lactamase CTX-M-3 [Escherichia coli]
 gi|83265610|gb|ABB97553.1| beta-lactamase CTX-M-3 [Escherichia coli]
 gi|83416719|gb|ABC18324.1| beta-lactamase CTX-M-3 [Enterobacter cloacae]
 gi|83416721|gb|ABC18325.1| beta-lactamase CTX-M-3 [Klebsiella pneumoniae]
 gi|84657407|gb|ABC60031.1| extended-spectrum beta-lactamase CTX-M-3 [Enterobacter aerogenes]
 gi|84657409|gb|ABC60032.1| extended spectrum beta-lactamase CTX-M-3 [Citrobacter freundii]
 gi|112385954|gb|ABI17941.1| beta-lactamase [Salmonella sp. 577]
 gi|130918089|gb|ABO32642.1| extended-spectrum beta-lactamase CTX-M-3 [Enterobacter aerogenes]
 gi|146151219|gb|ABQ02985.1| CTX-M-3 extended-spectrum beta-lactamase [Klebsiella pneumoniae]
 gi|147712723|gb|ABQ45880.1| extended-spectrum beta-lactamase CTX-M-3 [Proteus mirabilis]
 gi|208609561|dbj|BAG72215.1| beta-lactamase CTX-M-3 [Enterobacter aerogenes]
 gi|209483436|gb|ACI47257.1| extended-spectrum class A beta-lactamase CTX-M-3 [Escherichia coli]
 gi|215397987|gb|ACJ65264.1| beta-lactamase CTX-M3 [Klebsiella pneumoniae]
 gi|221149274|gb|ACM04460.1| CTX-M-3 extended-spectrum beta-lactamase [Escherichia coli]
 gi|224696956|emb|CAR82577.1| beta-lactamase [Escherichia coli]
 gi|228480795|gb|ACQ42121.1| beta-lactamase CTX-M-3 precursor [Escherichia coli]
 gi|254871262|gb|ACT83744.1| beta-lactamase CTX-M-3 [Klebsiella pneumoniae]
 gi|254871266|gb|ACT83747.1| beta-lactamase CTX-M-3 [Klebsiella pneumoniae]
 gi|254871271|gb|ACT83750.1| beta-lactamase CTX-M-3 [Klebsiella pneumoniae]
 gi|254927429|gb|ACT85946.1| beta-lactamase CTX-M-3 [Klebsiella pneumoniae]
 gi|256858909|gb|ACV31764.1| beta-lactamase CTX-M-3 [Escherichia coli]
 gi|297498980|gb|ACU44514.2| beta-lactamase CTX-M-3 [Escherichia coli]
 gi|324036033|gb|ADY17613.1| beta-lactamase CTX-M-3 [Enterobacter cloacae]
 gi|324036037|gb|ADY17616.1| beta-lactamase CTX-M-3 [Enterobacter aerogenes]
 gi|324036041|gb|ADY17619.1| beta-lactamase CTX-M-3 [Enterobacter cloacae]
 gi|324036045|gb|ADY17622.1| beta-lactamase CTX-M-3 [Enterobacter aerogenes]
 gi|324036048|gb|ADY17624.1| beta-lactamase CTX-M-3 [Enterobacter cloacae]
 gi|324036051|gb|ADY17626.1| beta-lactamase CTX-M-3 [Enterobacter cloacae]
 gi|324036054|gb|ADY17628.1| beta-lactamase CTX-M-3 [Enterobacter cloacae]
          Length = 291

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|326573678|gb|EGE23636.1| peptidoglycan synthetase FtsI [Moraxella catarrhalis O35E]
          Length = 652

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 40/129 (31%), Gaps = 28/129 (21%)

Query: 48  LHAKPKYSSIVIDVNKNQMTG--------FKQDEPR--------------YPASLTKMMT 85
           L +    S +V+DV   ++                R               P S+ K  T
Sbjct: 330 LQSARSSSGMVVDVKTGEVLAMGSWPSFNSNNLSERDGANERNRPVLDVFEPGSVMKPFT 389

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
              +   L+S K   N+ I  S  + +       +++   +        LI +S+N  ST
Sbjct: 390 ---VAAALESGKYTTNSVIDTSPGSVSVGGYT--IRDGGNYGVITLDK-LIQKSSNVAST 443

Query: 146 AFGEFISGS 154
                +   
Sbjct: 444 KIALNLPTD 452


>gi|219920959|emb|CAQ76657.1| beta-lactamase [Klebsiella oxytoca]
          Length = 270

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 55  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 112 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 164


>gi|192288894|ref|YP_001989499.1| beta-lactamase [Rhodopseudomonas palustris TIE-1]
 gi|192282643|gb|ACE99023.1| beta-lactamase [Rhodopseudomonas palustris TIE-1]
          Length = 395

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 14/62 (22%)

Query: 57  IVIDVNKNQMTGFKQ--------------DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           + I  N  ++                   D   + AS+TK +T     + ++  KL L+ 
Sbjct: 24  VAIAGNSKEVLYQGAFGKRDLSKPEQMTTDSVFWIASMTKAITAAAAMQLVEQGKLSLDE 83

Query: 103 QI 104
            I
Sbjct: 84  PI 85


>gi|146771515|gb|ABQ45409.1| extended-spectrum beta-lactamase CTX-M-66 [Proteus mirabilis]
          Length = 291

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|124021056|gb|ABM88808.1| beta-lactamase CTX-M-3 [Klebsiella pneumoniae]
          Length = 290

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|68165963|gb|AAY87935.1| CTX-M-3 beta-lactamase [Klebsiella pneumoniae]
          Length = 214

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 40  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 98

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 99  HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 149


>gi|219920919|emb|CAQ76637.1| beta-lactamase [Klebsiella oxytoca]
          Length = 274

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 55  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 112 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 164


>gi|39933537|ref|NP_945813.1| beta-lactamase [Rhodopseudomonas palustris CGA009]
 gi|39647383|emb|CAE25904.1| putative esterase [Rhodopseudomonas palustris CGA009]
          Length = 395

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 14/62 (22%)

Query: 57  IVIDVNKNQMTGFKQ--------------DEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           + I  N  ++                   D   + AS+TK +T     + ++  KL L+ 
Sbjct: 24  VAIAGNSKEVLYQGAFGKRDLSKPEQMTTDSVFWIASMTKAITAAAAMQLVEQGKLSLDE 83

Query: 103 QI 104
            I
Sbjct: 84  PI 85


>gi|160889587|ref|ZP_02070590.1| hypothetical protein BACUNI_02013 [Bacteroides uniformis ATCC 8492]
 gi|270296708|ref|ZP_06202907.1| beta-lactamase [Bacteroides sp. D20]
 gi|317480077|ref|ZP_07939188.1| beta-lactamase [Bacteroides sp. 4_1_36]
 gi|399119|sp|P30898|BLAC_BACUN RecName: Full=Beta-lactamase; Flags: Precursor
 gi|143930|gb|AAA66962.1| beta-lactamase [Bacteroides uniformis]
 gi|156861104|gb|EDO54535.1| hypothetical protein BACUNI_02013 [Bacteroides uniformis ATCC 8492]
 gi|254966751|gb|ACT97374.1| CblA-1 beta-lactamase [uncultured organism]
 gi|254966813|gb|ACT97415.1| CblA-1 beta-lactamase [mixed culture bacterium AX_gF3SD01_15]
 gi|254966875|gb|ACT97456.1| CblA-1 beta-lactamase [uncultured organism]
 gi|254966949|gb|ACT97503.1| CblA-1 beta-lactamase [uncultured organism]
 gi|254966952|gb|ACT97505.1| CblA-1 beta-lactamase [uncultured organism]
 gi|254966956|gb|ACT97507.1| CblA-1 beta-lactamase [mixed culture bacterium CF_gF3SD01_01]
 gi|270272695|gb|EFA18558.1| beta-lactamase [Bacteroides sp. D20]
 gi|316903754|gb|EFV25597.1| beta-lactamase [Bacteroides sp. 4_1_36]
          Length = 296

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 63/183 (34%), Gaps = 37/183 (20%)

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPS------KLYLKEKTYFTTEQGILALITRS 139
              + + +  + + L++ + +   A+   P+      K +  +    T  + +   I++S
Sbjct: 73  ALAVLDKMDKQSISLDSIVSI--KASQMPPNTYSPLRKKFPDQDFTITLRELMQYSISQS 130

Query: 140 ANDVSTAFGEFISGSEKKFAILMSNKAKKI------------GMQNTIYKNASGLHDKNQ 187
            N+      E+  G        +++   ++            GM ++ ++          
Sbjct: 131 DNNACDILIEYAGG-----IKHINDYIHRLSIDSFNLSETEDGM-HSSFEAVY-----RN 179

Query: 188 ITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH--NKLLNKMH--NIDGIKTG 243
            +T      L     +   + +    ++ F ++  I T    NKL   +    + G KTG
Sbjct: 180 WSTPSAMVRLLRTADEK--ELFSNKELKDFLWQTMIDTETGANKLKGMLPAKTVVGHKTG 237

Query: 244 YTR 246
            + 
Sbjct: 238 SSD 240


>gi|332664615|ref|YP_004447403.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Haliscomenobacter
          hydrossis DSM 1100]
 gi|332333429|gb|AEE50530.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Haliscomenobacter
          hydrossis DSM 1100]
          Length = 448

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 46 SELHAKPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQS 95
          S + A+  Y   + D N       K  +  + PAS TK+ TLY   + L+ 
Sbjct: 43 SPIFARHFYGFALYDPNGKLTLFQKDADKFFTPASNTKIFTLYTALKVLKD 93


>gi|322806097|emb|CBZ03664.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum H04402
           065]
          Length = 137

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 12/69 (17%)

Query: 263 IVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTY 322
           ++AV+MG PT + R++ A +L+     K   K            T +KK  +I K+    
Sbjct: 1   MLAVIMGAPTYKIRNKDASKLMNYGFSKFECK------------TLVKKGDVISKVPLNS 48

Query: 323 SQFKKIDAK 331
              K   AK
Sbjct: 49  KGDKYFMAK 57


>gi|310642144|ref|YP_003946902.1| alkaline d-peptidase and alkaline d-peptidase fusion [Paenibacillus
           polymyxa SC2]
 gi|309247094|gb|ADO56661.1| Alkaline D-peptidase and alkaline D-peptidase fusion [Paenibacillus
           polymyxa SC2]
          Length = 383

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           SLTK  T  ++ + +  +KL L+  I         +  K    E  + T  Q 
Sbjct: 97  SLTKTFTAMVVLQLVDEQKLSLDDTI----EKWLPDVVKGTEYEGEHITIRQL 145


>gi|254966778|gb|ACT97392.1| CTX-M-15 beta-lactamase [mixed culture bacterium AX_gF1DD01_14]
 gi|322227641|gb|ADW95285.1| extended spectrum beta lactamase CTX-M-15 [Enterobacter sp. 247
           BMC]
          Length = 288

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|219920957|emb|CAQ76656.1| beta-lactamase [Klebsiella oxytoca]
          Length = 274

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 55  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 112 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 164


>gi|219920933|emb|CAQ76644.1| beta-lactamase [Klebsiella oxytoca]
 gi|219920945|emb|CAQ76650.1| beta-lactamase [Klebsiella oxytoca]
          Length = 274

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 55  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 112 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 164


>gi|188589770|ref|YP_001921883.1| beta-lactamase [Clostridium botulinum E3 str. Alaska E43]
 gi|188500051|gb|ACD53187.1| beta-lactamase [Clostridium botulinum E3 str. Alaska E43]
          Length = 361

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           AS+TK+ T   I +  Q  KL L+ +I
Sbjct: 56  ASVTKVFTAVAILQLAQQGKLKLDDKI 82


>gi|19526204|gb|AAL86924.1| beta-lactamase CTX-M-22 [Klebsiella pneumoniae]
 gi|61992246|gb|AAX58181.1| beta-lactamase CTX-M-22 [Enterobacter cloacae]
 gi|83415873|gb|ABC18115.1| extended spectrum beta-lactamase CTX-M-22 [Serratia marcescens]
 gi|166092026|gb|ABY82050.1| beta-lactamase CTX-M-22 [Escherichia coli]
 gi|166092030|gb|ABY82052.1| beta-lactamase CTX-M-22 [Escherichia coli]
 gi|281335918|gb|ADA62516.1| CTX-M-22 beta-lactamase [synthetic construct]
 gi|300392844|gb|ADK11443.1| beta-lactamase CTX-M-22 [Serratia liquefaciens]
          Length = 291

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|20150560|pdb|1JVJ|A Chain A, Crystal Structure Of N132a Mutant Of Tem-1 Beta-Lactamase
           In Complex With A N-Formimidoyl-Thienamycine
          Length = 263

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 48/123 (39%), Gaps = 7/123 (5%)

Query: 52  PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
            +   I +D+N  ++    + E R+P  S  K++    +   + + +  L  +I  S+  
Sbjct: 17  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQND 76

Query: 111 ATQ--NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKA 166
             +    ++ +L +    T  +   A IT S    +      I G ++   F   M +  
Sbjct: 77  LVEYSPVTEKHLTDG--MTVRELCSAAITMSDATAANLLLTTIGGPKELTAFLHNMGDHV 134

Query: 167 KKI 169
            ++
Sbjct: 135 TRL 137


>gi|254524108|ref|ZP_05136163.1| beta-lactamase [Stenotrophomonas sp. SKA14]
 gi|219721699|gb|EED40224.1| beta-lactamase [Stenotrophomonas sp. SKA14]
          Length = 478

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 40/118 (33%), Gaps = 25/118 (21%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYPA--------------SLTKMMTLYIIFEYLQSKKLHLN 101
           ++++  +   +        R PA              S+ K++T  ++ + ++  K+ L+
Sbjct: 49  AVLV-AHNGNVLYQGASGERDPATHAPATVDTIFASQSVAKLLTSTLVMQLVEQGKVDLD 107

Query: 102 TQ----IPVSKTAATQNPSKLYL----KEKTYFTTEQGILALITRSANDVSTAFGEFI 151
                 +P   +A      + +L        Y     G    I++  + ++      +
Sbjct: 108 APASRYVPDLPSAWQAISVRDFLNHSSGIGEYADRRDGHW--ISKGYDGMAPDLASAL 163


>gi|90019041|gb|ABC18328.3| extended-spectrum beta-lactamase CTX-M-54 [Klebsiella pneumoniae]
          Length = 291

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|325681102|ref|ZP_08160632.1| putative lipoprotein [Ruminococcus albus 8]
 gi|324107024|gb|EGC01310.1| putative lipoprotein [Ruminococcus albus 8]
          Length = 389

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 46/161 (28%), Gaps = 28/161 (17%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYII----FEYLQSKKLHLNTQIPVSKTAATQNPS 116
           V      G+ Q E          MT   I     + L  K + L+T+IP++   A  + +
Sbjct: 145 VETGATIGYHQYEQF--------MTCSTIKAPFVKSLLVKDIDLDTKIPLNNKWAGDDGT 196

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
                    FT  + I   I  S N       +     E       +    +IG     +
Sbjct: 197 LSGEDYGKEFTARELIEYTILESDNTAYQLLCQTFGTDE------FNRNQYEIG---ANF 247

Query: 177 KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
                        T  D         K++   YK+    K 
Sbjct: 248 TLGYNAEWIFTYCTPEDMT-------KSYVDIYKFAEENKL 281


>gi|270263838|ref|ZP_06192106.1| hypothetical protein SOD_f00490 [Serratia odorifera 4Rx13]
 gi|270042031|gb|EFA15127.1| hypothetical protein SOD_f00490 [Serratia odorifera 4Rx13]
          Length = 380

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           + D     AS+TK+MT  ++ +     ++ L   +
Sbjct: 76  RPDSLIRIASITKLMTSEVMVKMAAEGRVKLTDPL 110


>gi|219920991|emb|CAQ76673.1| beta-lactamase [Klebsiella oxytoca]
          Length = 274

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 55  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 112 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 164


>gi|134102312|ref|YP_001107973.1| putative penicillin-binding (cell division related) protein
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291003726|ref|ZP_06561699.1| putative penicillin-binding (cell division related) protein
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133914935|emb|CAM05048.1| putative penicillin-binding (cell division related) protein
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 613

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPAS 79
           S++V+D    ++     D+   PAS
Sbjct: 281 SAVVLDAKTGEVYALANDKTFDPAS 305


>gi|118132717|gb|ABK60211.1| extended-spectrum beta-lactamase CTX-M-3 [Shigella boydii]
          Length = 208

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 33  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 91

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 92  HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 142


>gi|48477087|ref|YP_022793.1| D-Ala-D-Ala carboxypeptidase 3 [Picrophilus torridus DSM 9790]
 gi|48429735|gb|AAT42600.1| D-Ala-D-Ala carboxypeptidase 3 [Picrophilus torridus DSM 9790]
          Length = 323

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 62 NKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKK 97
             ++   F  D P  PAS  K++T  +   Y++  K
Sbjct: 11 KSGRVLRSFNMDLPLMPASNMKIVTAILAMRYIKDFK 47


>gi|16119210|ref|NP_395546.1| beta-lactamase [Staphylococcus aureus subsp. aureus N315]
 gi|90969158|ref|YP_536855.1| beta-lactamase [Staphylococcus aureus]
 gi|13774149|dbj|BAB43879.1| beta-lactamase [Staphylococcus aureus subsp. aureus N315]
 gi|90960973|dbj|BAE92844.1| beta-lactamase [Staphylococcus aureus]
          Length = 281

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 21/154 (13%)

Query: 31  MGKILFLSIIMISMAS----ELHAK----------PKYSSIVIDVNKNQMTGFKQDEPRY 76
           M K++FL +I + +++      HAK                 +D    +   F  D+   
Sbjct: 1   MKKLIFLIVIALVLSACNSNSSHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS +K +   I+ E +   K  LN ++ ++K         L        T ++ I A +
Sbjct: 61  YASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITLKELIEASM 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           T S N  +    + I G        +  + K++G
Sbjct: 119 TYSDNTANNKIIKEIGG-----IKKVKQRLKELG 147


>gi|27372230|dbj|BAC53608.1| b-lactamase FEC-1 [Escherichia coli]
          Length = 291

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|328881793|emb|CCA55032.1| Cell division protein FtsI [Streptomyces venezuelae ATCC 10712]
          Length = 589

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/159 (11%), Positives = 52/159 (32%), Gaps = 33/159 (20%)

Query: 51  KPKYSSIVI-DVNKNQMTGFKQD----------------------EPRYPASLTKMMTLY 87
           K     +V+ +    ++                            +   P S +K+M++ 
Sbjct: 244 KADRGYVVVQNTRTGEVLAMANAPGFDPNDLSAANAAAMGNAALQDAYEPGSTSKVMSMA 303

Query: 88  IIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
            + E     K   +T + V          +L+  +  + T    +  ++ +S+N  +   
Sbjct: 304 AVLEE---GKATPDTHVTVPNRLHR--GDRLFKDDVDHETWYLTLNGVLAKSSNIGTILA 358

Query: 148 GEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
              +  ++ +   ++ +  +K GM      + +GL    
Sbjct: 359 TGQLGATQAESNKVLHSYLRKFGM-----GSPTGLDYPG 392


>gi|281335944|gb|ADA62529.1| CTX-M-62-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|229109250|ref|ZP_04238849.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
 gi|228674260|gb|EEL29505.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
          Length = 363

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 68/187 (36%), Gaps = 37/187 (19%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASE----------LHAKPKYSSIVIDVNKNQMTGFKQ 71
           + I   I ++G I F S+     + E           H   K +S+++  N   +T   +
Sbjct: 7   VGIIAGITIVGCIAFFSVKEYVNSKEDSNYVLNYIKEHKDDKTTSLIVKRNGETLTSINE 66

Query: 72  DEPRYPASLTKMMTLYIIFEY---LQSKKLHLNTQIPVSKT--------------AATQN 114
            E    AS++K+    I  EY   +   K+  + QI + +               A   +
Sbjct: 67  KEKLPLASMSKI---IIAIEYAKQVDEGKIRKDEQISLKELEKYYVKNTDGGAHPAWLDD 123

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM-QN 173
                L +    + E+ +  +I  S+N  ++   + +       A  ++   K++G+  +
Sbjct: 124 VKVKELVKGGQTSLEEVVKGMIHYSSNANASYLLDKLG------AARINESLKELGLNSH 177

Query: 174 TIYKNAS 180
             +    
Sbjct: 178 DEFYPTY 184


>gi|330447388|ref|ZP_08311037.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Photobacterium leiognathi subsp. mandapamensis
          svers.1.1.]
 gi|328491579|dbj|GAA05534.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Photobacterium leiognathi subsp. mandapamensis
          svers.1.1.]
          Length = 467

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 22 IYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSI---VIDVNKNQMTGFK-QDEPRYP 77
          ++ +     +    F S    S    ++  PK S +   +++   N++   K  DE + P
Sbjct: 1  MFKKLLCSALMATSFSSFAAFSPQQAINQLPKGSDVTLLIVNPATNKVIYDKRADELQAP 60

Query: 78 ASLTKMMTLY 87
          AS  K +T  
Sbjct: 61 ASTQKTITAL 70


>gi|281335970|gb|ADA62542.1| CTX-M-28-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|219920917|emb|CAQ76636.1| beta-lactamase [Klebsiella oxytoca]
          Length = 274

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 55  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 112 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 164


>gi|219920895|emb|CAQ76625.1| beta-lactamase [Klebsiella oxytoca]
 gi|219920901|emb|CAQ76628.1| beta-lactamase [Klebsiella oxytoca]
 gi|219920985|emb|CAQ76670.1| beta-lactamase [Klebsiella oxytoca]
 gi|219920987|emb|CAQ76671.1| beta-lactamase [Klebsiella oxytoca]
          Length = 274

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 55  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 112 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 164


>gi|144954337|gb|ABP04245.1| CTX-M-62 extended-spectrum beta-lactamase [Klebsiella pneumoniae]
 gi|281335924|gb|ADA62519.1| CTX-M-62 beta-lactamase [synthetic construct]
          Length = 291

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|114570907|ref|YP_757587.1| beta-lactamase [Maricaulis maris MCS10]
 gi|114341369|gb|ABI66649.1| beta-lactamase [Maricaulis maris MCS10]
          Length = 368

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 17/41 (41%)

Query: 64  NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
                 + D+  +  S TK MT  ++   ++  ++  +  I
Sbjct: 64  GTDIALQPDDLWHLGSNTKSMTATLVARLVEQGRISWDDTI 104


>gi|74422851|gb|ABA06586.1| mutant extended-spectrum beta-lactamase SHV-64 [Klebsiella
           pneumoniae]
          Length = 286

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 63/202 (31%), Gaps = 39/202 (19%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAK----------PKYSSIVIDVNKNQMT-GFKQDEP 74
           R I+L    L  ++ +   AS    +           +   I +D+   +    ++ DE 
Sbjct: 2   RYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADER 61

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQI-----------PVSKTAATQNPSKLYLKEK 123
               S  K++    +   + +    L  +I           PVS+          +L + 
Sbjct: 62  FPMMSTFKVLLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEK---------HLADG 112

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNASG 181
              T  +   A IT S N  +      + G      F   + +   ++    T    A  
Sbjct: 113 --MTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALP 170

Query: 182 LHDKNQITTARDQAILGILLRK 203
              ++  T A     +   LRK
Sbjct: 171 GDARDTTTPA----SMAATLRK 188


>gi|281335940|gb|ADA62527.1| CTX-M-62-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|219920955|emb|CAQ76655.1| beta-lactamase [Klebsiella oxytoca]
          Length = 274

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 55  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 112 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 164


>gi|307331150|ref|ZP_07610277.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Streptomyces violaceusniger Tu 4113]
 gi|306883230|gb|EFN14289.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Streptomyces violaceusniger Tu 4113]
          Length = 524

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 44 MASELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTL 86
          +A  L        +V D +        + D+   PAS TK+ T 
Sbjct: 47 LADPLLKGGAAGVVVADADSGAALYRHRADDRLMPASNTKLFTS 90


>gi|219920993|emb|CAQ76674.1| beta-lactamase [Klebsiella oxytoca]
          Length = 274

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 55  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 112 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 164


>gi|37527524|ref|NP_930868.1| peptidoglycan synthetase ftsI precursor (penicillin-binding protein
           3) (PBP-3) [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786959|emb|CAE16033.1| peptidoglycan synthetase ftsI precursor (penicillin-binding protein
           3) (PBP-3) [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 588

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 52/154 (33%), Gaps = 32/154 (20%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTG------FKQDEPR----------------YPAS 79
           ++ A   +     +++++DVN  ++        +  +                    P S
Sbjct: 247 LTNAVAFNKAESGTAVLVDVNTGEVLAMANSPSYNPNNRINTPKEVMRNRAITDIFEPGS 306

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRS 139
             K M   ++   L    +  NT I           S   +++ + +  E  I  ++ +S
Sbjct: 307 TVKPM---VVMAALNDGIIKENTVI----NTVPYRISGKEIRDVSRYP-ELSITGILQKS 358

Query: 140 ANDVSTAFGEFISGSE--KKFAILMSNKAKKIGM 171
           +N   +     +  +E    ++     KA  +G+
Sbjct: 359 SNVGVSKLALAMPATELVDVYSRFGLGKATNLGL 392


>gi|228992253|ref|ZP_04152186.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
           12442]
 gi|228998307|ref|ZP_04157902.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
 gi|229005790|ref|ZP_04163488.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4]
 gi|228755466|gb|EEM04813.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4]
 gi|228761459|gb|EEM10410.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
 gi|228767506|gb|EEM16136.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
           12442]
          Length = 369

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 39/118 (33%), Gaps = 20/118 (16%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQ---SKK 97
            I+   E H   K S+++I  N   +     D     AS  K+    +  E+ +     +
Sbjct: 37  FIASFVEEHKDEKNSALLIKRNDKVVYSVNPDVVLPVASTMKL---IVALEFTKQVVDGR 93

Query: 98  LHLNTQIPVS--------------KTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
           +  N+ + +               +    +   K    +    + E+    ++  S+N
Sbjct: 94  IDPNSYVSIDDVNRYYIPNTDGGAQDRWQKYLMKTGKMDGNAISLEEVAKGMMKFSSN 151


>gi|299141567|ref|ZP_07034703.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Prevotella oris C735]
 gi|298576903|gb|EFI48773.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Prevotella oris C735]
          Length = 420

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 59  IDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYL 93
           +D +   +  F + +   PAS  K++T     + L
Sbjct: 82  LDADS-TIFAFNEHQLMRPASTMKLVTAITAIDRL 115


>gi|281425418|ref|ZP_06256331.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Prevotella oris F0302]
 gi|281400411|gb|EFB31242.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Prevotella oris F0302]
          Length = 420

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 59  IDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYL 93
           +D +   +  F + +   PAS  K++T     + L
Sbjct: 82  LDADS-TIFAFNEHQLMRPASTMKLVTAITAIDRL 115


>gi|270158792|ref|ZP_06187449.1| beta-lactamase [Legionella longbeachae D-4968]
 gi|289166411|ref|YP_003456549.1| beta-lactamase [Legionella longbeachae NSW150]
 gi|269990817|gb|EEZ97071.1| beta-lactamase [Legionella longbeachae D-4968]
 gi|288859584|emb|CBJ13552.1| putative beta-lactamase [Legionella longbeachae NSW150]
          Length = 363

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 70/178 (39%), Gaps = 20/178 (11%)

Query: 11  KKTFLTYPYGSIYIQRNIQLMGKILFLSI-IMISMASELHAKPKYSSI-----------V 58
           K  FLT    +  I+  +Q +   L  S     +  +++    + S+I            
Sbjct: 2   KIKFLTQFVDASKIKSRLQWIFLGLIFSFDCFAAHNNDIELSRRISAIEKNSRTVMGITA 61

Query: 59  IDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAATQNPS- 116
           I + KN++     ++  + AS  K+         +   K  L+  I + +K +   + S 
Sbjct: 62  IHIEKNKIISHNSNQRFFMASTVKLPIALAFLHRVDENKESLDRVIKMDTKNSVPGSGSL 121

Query: 117 -KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
             ++ K+K   + +Q ++ ++  S N  S    +  +G        ++++   +G +N
Sbjct: 122 HHIFEKKKLNMSLKQVLIHMMRNSDNSASDTILKVTNGP-----KYVASRMSALGFKN 174


>gi|295688159|ref|YP_003591852.1| beta-lactamase [Caulobacter segnis ATCC 21756]
 gi|295430062|gb|ADG09234.1| beta-lactamase [Caulobacter segnis ATCC 21756]
          Length = 509

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 13/83 (15%)

Query: 55  SSIVI------DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
           +++++      DV          D   Y AS TK  T   +       +L L+T +    
Sbjct: 69  AAVLVAGYGVADVRTGTRV--DADTGFYIASATKAFTALALARMAGRGELGLDTPV---- 122

Query: 109 TAATQNPSKLYLKEKTYFTTEQG 131
            AA    S L        T    
Sbjct: 123 -AAWAGASPLPADIGGSITLTDL 144


>gi|219920989|emb|CAQ76672.1| beta-lactamase [Klebsiella oxytoca]
          Length = 274

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 55  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 112 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 164


>gi|157812672|gb|ABV81082.1| extended-spectrum beta-lactamase CTX-M-68 [Klebsiella sp.
           ARS06-441]
          Length = 291

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + +   ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDDTFRL 165


>gi|71909116|ref|YP_286703.1| peptidoglycan synthetase FtsI [Dechloromonas aromatica RCB]
 gi|71848737|gb|AAZ48233.1| peptidoglycan synthetase FtsI [Dechloromonas aromatica RCB]
          Length = 582

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 25/99 (25%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSIVIDVNKNQMTGF--------KQDEPR---- 75
           + L  KI +L+   +  A E +      +IVID    ++              E      
Sbjct: 233 LALDSKIQYLAYSQLKNAVETNNAKAGGAIVIDARTGEVLALANWPTYNPNNRERLSGAQ 292

Query: 76  ----------YPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
                      P S+ K  T  +  E     K+  +T I
Sbjct: 293 LRNRAITDTFEPGSVMKPFTAALALE---KGKVRFDTVI 328


>gi|322378014|ref|ZP_08052501.1| penicillin-binding protein 1B [Streptococcus sp. M334]
 gi|321280996|gb|EFX58009.1| penicillin-binding protein 1B [Streptococcus sp. M334]
          Length = 824

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 14/67 (20%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGF----------KQ---DEPRYPASLTKMMTLY-II 89
           +  +   +P+  ++++D     + GF               D  R PAS TK +  Y I 
Sbjct: 413 LVDDATGQPEVGNVLMDNKTGAVLGFVGGRNYQINQNNHAFDTKRSPASTTKPLLAYGIA 472

Query: 90  FEYLQSK 96
            +     
Sbjct: 473 IDQGLMG 479


>gi|219920951|emb|CAQ76653.1| beta-lactamase [Klebsiella oxytoca]
 gi|219920975|emb|CAQ76665.1| beta-lactamase [Klebsiella oxytoca]
          Length = 274

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 55  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 112 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 164


>gi|219920899|emb|CAQ76627.1| beta-lactamase [Klebsiella oxytoca]
 gi|219920931|emb|CAQ76643.1| beta-lactamase [Klebsiella oxytoca]
 gi|219920947|emb|CAQ76651.1| beta-lactamase [Klebsiella oxytoca]
 gi|219920949|emb|CAQ76652.1| beta-lactamase [Klebsiella oxytoca]
          Length = 274

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 55  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 112 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 164


>gi|293392994|ref|ZP_06637311.1| penicillin-binding protein AmpH [Serratia odorifera DSM 4582]
 gi|291424528|gb|EFE97740.1| penicillin-binding protein AmpH [Serratia odorifera DSM 4582]
          Length = 381

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           + D     AS+TK+MT  ++ +     ++ L   +
Sbjct: 76  RPDSLIRIASITKLMTSEVMVKMAAQGQVKLTDPL 110


>gi|271966988|ref|YP_003341184.1| beta-lactamase [Streptosporangium roseum DSM 43021]
 gi|270510163|gb|ACZ88441.1| beta-lactamase [Streptosporangium roseum DSM 43021]
          Length = 415

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 4/47 (8%)

Query: 63  KNQMTGFKQDEPRYP----ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
              +   +    R      ASLTK+ T  +I    +  +L L+  + 
Sbjct: 106 SGALLADRPAVRRDSIFDLASLTKLYTTAVILSLAEEGRLGLDEPVT 152


>gi|455609|gb|AAB19684.1| beta-lactamase [Klebsiella oxytoca, strain D488, Peptide Partial,
           263 aa]
 gi|228284|prf||1802283A beta lactamase
          Length = 263

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 28  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 84

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 85  EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 137


>gi|331696614|ref|YP_004332853.1| penicillin-binding protein transpeptidase [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951303|gb|AEA25000.1| penicillin-binding protein transpeptidase [Pseudonocardia
           dioxanivorans CB1190]
          Length = 928

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 47/134 (35%), Gaps = 33/134 (24%)

Query: 56  SIVIDVNKNQMTGFKQDEPRYP--------ASL-----T---------KMMTLYIIFEYL 93
           ++V+D    ++      +   P        AS+     T         K++T+      L
Sbjct: 598 AVVLDAKTGEVLALANSDTFDPTNLAGATAASMGNEAVTTPYEPGSVNKIVTM---SAAL 654

Query: 94  QSKKLHLNTQIPV--SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
           +S     +  + V  S   A +  +  +     ++T       ++ +S+N  +    + +
Sbjct: 655 ESGVAKPDDVLDVPGSIKVADRTINDAWSHGLDHYTL----TGVLAKSSNVGTIMTAQKV 710

Query: 152 SGSEKKFAILMSNK 165
              E +F  +++  
Sbjct: 711 G--EDRFWDMLNRY 722


>gi|284050224|ref|ZP_06380434.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Arthrospira platensis str. Paraca]
          Length = 474

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 9/56 (16%)

Query: 39 IIMISMASELHA---KPKYS----SIVID-VNKNQMTGFKQDEPRY-PASLTKMMT 85
          I    + +E++A    PK+S     I+I+ ++  Q+      E  + PAS  K++T
Sbjct: 27 ICPAVLEAEINAIALDPKFSRSRWGILIESLDSGQVLYSLDSERFFLPASTIKLLT 82


>gi|302870334|ref|YP_003838971.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Micromonospora aurantiaca ATCC 27029]
 gi|302573193|gb|ADL49395.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Micromonospora aurantiaca ATCC 27029]
          Length = 588

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 58  VIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEY 92
           V DV+  Q      QD P  PAS+TK+ T   +   
Sbjct: 202 VADVSTGQALYGSGQDTPTVPASVTKLATGVAVLAA 237


>gi|34559244|gb|AAQ75378.1| beta-lactamase OXY-2 [Klebsiella oxytoca]
 gi|48473855|emb|CAG34106.1| class A beta-lactamase [Klebsiella oxytoca]
          Length = 290

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 55  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 112 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 164


>gi|1705474|sp|P23954|BLO2_KLEOX RecName: Full=Beta-lactamase OXY-2; AltName: Full=Penicillinase;
           Flags: Precursor
 gi|1226010|emb|CAA88908.1| beta-lactamase [Klebsiella oxytoca]
          Length = 290

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 55  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 112 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 164


>gi|226306155|ref|YP_002766115.1| D-alanyl-D-alanine carboxypeptidase [Rhodococcus erythropolis
          PR4]
 gi|226185272|dbj|BAH33376.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus
          erythropolis PR4]
          Length = 530

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 44 MASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTK---MMTLY 87
          MA++ +A  ++S +++D   +++      D   + AS TK   + T Y
Sbjct: 48 MATDPYAMARWSYLLVDPATDEVVYSNNADSSMFLASQTKHFTVGTAY 95


>gi|219920973|emb|CAQ76664.1| beta-lactamase [Klebsiella oxytoca]
          Length = 274

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 55  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 112 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 164


>gi|219920903|emb|CAQ76629.1| beta-lactamase [Klebsiella oxytoca]
          Length = 269

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 54  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 110

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 111 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 163


>gi|18845080|gb|AAL79541.1|AF473577_1 beta-lactamase K1 [Klebsiella oxytoca]
 gi|60416701|emb|CAI43415.1| beta-lactamase [Klebsiella oxytoca]
          Length = 290

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 55  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 112 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 164


>gi|315504842|ref|YP_004083729.1| beta-lactamase [Micromonospora sp. L5]
 gi|315411461|gb|ADU09578.1| beta-lactamase [Micromonospora sp. L5]
          Length = 436

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 6/26 (23%), Positives = 15/26 (57%)

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQI 104
           S+TK MT  ++ +   + ++ L+  +
Sbjct: 59  SITKTMTAVLVMQQRDAGRVALDDPL 84


>gi|21225869|ref|NP_631648.1| hydrolase [Streptomyces coelicolor A3(2)]
 gi|11322396|emb|CAC16709.1| putative hydrolase [Streptomyces coelicolor A3(2)]
          Length = 393

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 10/79 (12%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++ V DV+  + +T    D      S+TK  T   + + ++  ++ L+  I         
Sbjct: 60  AAGVADVDTGRPVTA---DLRHRVGSITKTFTAAAVLQQVEQGRIVLDAPI------GRY 110

Query: 114 NPSKLYLKEKTYFTTEQGI 132
            P  L        T    +
Sbjct: 111 LPGLLPDGRGEAVTVRMLM 129


>gi|113475897|ref|YP_721958.1| hypothetical protein Tery_2257 [Trichodesmium erythraeum IMS101]
 gi|110166945|gb|ABG51485.1| hypothetical protein Tery_2257 [Trichodesmium erythraeum IMS101]
          Length = 434

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALIT 137
           ASL K+     + + +  + + L+T + VS+   T++ SK  ++ +  +  +  +  +I 
Sbjct: 217 ASLIKVPIAVALMQKVSKENISLDTPVYVSRGNFTEDGSK--IRARKRYPLKTLVGEMID 274

Query: 138 RSANDVSTAFGEFIS 152
            S+N  +    +++ 
Sbjct: 275 HSSNIATNQLIDYLG 289


>gi|241889589|ref|ZP_04776887.1| conserved hypothetical protein [Gemella haemolysans ATCC 10379]
 gi|241863211|gb|EER67595.1| conserved hypothetical protein [Gemella haemolysans ATCC 10379]
          Length = 279

 Score = 37.9 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 34/96 (35%), Gaps = 2/96 (2%)

Query: 63  KNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS-KLYLK 121
             ++    + +P    S  K+    ++ +  +   L +  +  ++ T    +     Y+K
Sbjct: 49  TGELIEMNETQPMTAGSTYKLPLNMLVVDNFEKYNLSMTKRYDITNTYYEYDGEHNTYVK 108

Query: 122 E-KTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
             K   T  Q     +  S N  + A  + + G  +
Sbjct: 109 VFKGAMTIPQMQYYSLVHSENTPAYALADRLGGMSE 144


>gi|226360341|ref|YP_002778119.1| hypothetical protein ROP_09270 [Rhodococcus opacus B4]
 gi|226238826|dbj|BAH49174.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 271

 Score = 37.9 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           +++V+  +   +  +   +  +P AS+TK++  Y +    +   + L+  
Sbjct: 16  AAVVLSRDDGVIGEYGDQQRVFPLASVTKLLCAYAVLVATEEGAVELDQP 65


>gi|74058441|gb|AAZ98828.1| SHV type extended spectrum beta-lactamase [Klebsiella pneumoniae]
          Length = 286

 Score = 37.9 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 63/202 (31%), Gaps = 39/202 (19%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAK----------PKYSSIVIDVNKNQMT-GFKQDEP 74
           R I+L    L  ++ +   AS    +           +   I +D+   +    ++ DE 
Sbjct: 2   RYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLTSGRTLTAWRADER 61

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQI-----------PVSKTAATQNPSKLYLKEK 123
               S  K++    +   + +    L  +I           PVS+          +L + 
Sbjct: 62  FPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEK---------HLADG 112

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNASG 181
              T  +   A IT S N  +      + G      F   + +   ++    T    A  
Sbjct: 113 --MTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALP 170

Query: 182 LHDKNQITTARDQAILGILLRK 203
              ++  T A     +   LRK
Sbjct: 171 GDARDTTTPA----SMAATLRK 188


>gi|156053728|ref|XP_001592790.1| hypothetical protein SS1G_05711 [Sclerotinia sclerotiorum 1980]
 gi|154703492|gb|EDO03231.1| hypothetical protein SS1G_05711 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 455

 Score = 37.9 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           K D   + AS TK++T     + +   +L L+  +
Sbjct: 103 KTDAIFWIASCTKLLTAISALQCVSRGQLSLDEDV 137


>gi|126438301|ref|YP_001073992.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. JLS]
 gi|126238101|gb|ABO01502.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. JLS]
          Length = 447

 Score = 37.9 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 10/60 (16%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D  R  AS++K MT  +I +  Q  +L +    P+S+           + +    T +Q 
Sbjct: 108 DHVR-IASISKSMTATVILQLQQEGELAITD--PISRYIP-------GVPDGDSITIQQL 157


>gi|108802319|ref|YP_642516.1| twin-arginine translocation pathway signal [Mycobacterium sp. MCS]
 gi|119871474|ref|YP_941426.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. KMS]
 gi|108772738|gb|ABG11460.1| Twin-arginine translocation pathway signal [Mycobacterium sp. MCS]
 gi|119697563|gb|ABL94636.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. KMS]
          Length = 447

 Score = 37.9 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 10/60 (16%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
           D  R  AS++K MT  +I +  Q  +L +    P+S+           + +    T +Q 
Sbjct: 108 DHVR-IASISKSMTATVILQLQQEGELAITD--PISRYIP-------GVPDGDSITIQQL 157


>gi|46452174|gb|AAS98184.1| inhibitor-resistant beta-lactamase [Klebsiella pneumoniae]
          Length = 286

 Score = 37.9 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 63/202 (31%), Gaps = 39/202 (19%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAK----------PKYSSIVIDVNKNQMT-GFKQDEP 74
           R I+L    L  ++ +   AS    +           +   I +D+   +    ++ DE 
Sbjct: 2   RYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADER 61

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQI-----------PVSKTAATQNPSKLYLKEK 123
               S  K++    +   + +    L  +I           PVS+          +L + 
Sbjct: 62  FPMISTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEK---------HLADG 112

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNASG 181
              T  +   A IT S N  +      + G      F   + +   ++    T    A  
Sbjct: 113 --MTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALP 170

Query: 182 LHDKNQITTARDQAILGILLRK 203
              ++  T A     +   LRK
Sbjct: 171 GDARDTTTPA----SMAATLRK 188


>gi|219920983|emb|CAQ76669.1| beta-lactamase [Klebsiella oxytoca]
          Length = 269

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 54  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 110

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 111 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 163


>gi|219920963|emb|CAQ76659.1| beta-lactamase [Klebsiella oxytoca]
 gi|219920981|emb|CAQ76668.1| beta-lactamase [Klebsiella oxytoca]
 gi|219920995|emb|CAQ76675.1| beta-lactamase [Klebsiella oxytoca]
          Length = 273

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 54  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 110

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 111 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 163


>gi|32130555|gb|AAL78278.2| K1 beta-lactamase [Klebsiella oxytoca]
          Length = 290

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 55  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 112 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 164


>gi|257136312|gb|ACV44456.1| beta-lactamase OXY-2 [Klebsiella oxytoca]
          Length = 290

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 55  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 112 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 164


>gi|290473526|ref|YP_003466396.1| beta-lactamase/D-ala carboxypeptidase, penicillin-binding protein
           [Xenorhabdus bovienii SS-2004]
 gi|289172829|emb|CBJ79600.1| beta-lactamase/D-ala carboxypeptidase, penicillin-binding protein
           [Xenorhabdus bovienii SS-2004]
          Length = 405

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 8/53 (15%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ--------IPVSKTAATQN 114
           +QD     AS+TK+MT  ++ +  Q ++L +           + V   A TQ 
Sbjct: 102 RQDSVIRLASITKLMTSEVMIKLAQKERLKITDPLQKYTYHGVRVPDYAITQP 154


>gi|254927433|gb|ACT85949.1| beta-lactamase CTX-M-15 [Escherichia coli]
 gi|255964402|gb|ACU44519.1| beta-lactamase CTX-M-15 [Escherichia coli]
 gi|255964406|gb|ACU44521.1| beta-lactamase CTX-M-15 [Escherichia coli]
 gi|260914756|gb|ACX54229.1| beta-lactamase blaCTX-M-15 [Escherichia coli]
          Length = 241

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|65994176|gb|AAY42633.1| beta-lactamase SHV-70 [Enterobacter cloacae]
          Length = 286

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 63/202 (31%), Gaps = 39/202 (19%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAK----------PKYSSIVIDVNKNQMT-GFKQDEP 74
           R I+L    L  ++ +   AS    +           +   I +D+   +    ++ DE 
Sbjct: 2   RYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADER 61

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQI-----------PVSKTAATQNPSKLYLKEK 123
               S  K++    +   + +    L  +I           PVS+          +L + 
Sbjct: 62  FPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEK---------HLADG 112

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNASG 181
              T  +   A IT S N  +      + G      F   + +   ++    T    A  
Sbjct: 113 --MTVGELCAAAITMSDNSAANLLLATVGGPAGVTAFLRQIGDNVTRLDRWETELNEALP 170

Query: 182 LHDKNQITTARDQAILGILLRK 203
              ++  T A     +   LRK
Sbjct: 171 GDARDTTTPA----SMAATLRK 188


>gi|32130561|gb|AAL78282.3| K1 beta-lactamase [Klebsiella oxytoca]
          Length = 290

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 55  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 112 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 164


>gi|18041936|gb|AAL57765.1| beta-lactamase precursor HugA [Proteus penneri]
          Length = 298

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 48/112 (42%), Gaps = 7/112 (6%)

Query: 62  NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV--SKTAATQNPSKLY 119
           + +Q+T  + +E    AS +K+M +  + +  + +   L+  I +  S   A    ++ +
Sbjct: 57  DNSQITY-RGEERFAMASTSKVMAVAAVLKESEKQAGLLDKNIAIKKSDLVAYSPITEKH 115

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
           L      +  Q   A +  S N       +++ G  S  +FA  +++   ++
Sbjct: 116 LVTG--MSLAQLSAATLQYSDNTAMNKILDYLGGPSSVTQFARSINDVTYRL 165


>gi|323710380|gb|ADY02591.1| extended spectrum beta-lactamase CTX-M3 [Shigella sonnei]
 gi|323710382|gb|ADY02592.1| extended spectrum beta-lactamase CTX-M3 [Shigella dysenteriae 3]
 gi|323710384|gb|ADY02593.1| extended spectrum beta-lactamase CTX-M3 [Shigella flexneri 2a]
 gi|323710386|gb|ADY02594.1| extended spectrum beta-lactamase CTX-M3 [Shigella dysenteriae 2a]
          Length = 212

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 42  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 100

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 101 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 151


>gi|219920935|emb|CAQ76645.1| beta-lactamase [Klebsiella oxytoca]
          Length = 274

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 45/115 (39%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 55  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +    +
Sbjct: 112 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFSL 164


>gi|32130559|gb|AAL78281.2| K1 beta-lactamase [Klebsiella oxytoca]
          Length = 289

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 54  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 110

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 111 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 163


>gi|256786985|ref|ZP_05525416.1| hypothetical protein SlivT_21059 [Streptomyces lividans TK24]
          Length = 507

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 53  KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKM 83
           + ++ V+D+   +       D P  PAS TK+
Sbjct: 142 RRAAAVVDLTTGKRLYGLGSDAPLTPASTTKI 173


>gi|71018629|ref|XP_759545.1| hypothetical protein UM03398.1 [Ustilago maydis 521]
 gi|46099303|gb|EAK84536.1| hypothetical protein UM03398.1 [Ustilago maydis 521]
          Length = 401

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 18/35 (51%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           +D   + AS TK++T     + ++  KL L  ++ 
Sbjct: 57  KDSVFWIASCTKLITAIACLQLVEQGKLDLQDRVT 91


>gi|183602054|ref|ZP_02963423.1| hypothetical secreted protein with D-Ala-D-Ala carboxypeptidase 3
           (S13) domain [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|183218939|gb|EDT89581.1| hypothetical secreted protein with D-Ala-D-Ala carboxypeptidase 3
           (S13) domain [Bifidobacterium animalis subsp. lactis
           HN019]
          Length = 436

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 7/102 (6%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV---- 106
           P  S+I++  +   +      D  R PAS  K +T       L            +    
Sbjct: 52  PDVSAIIMQAD-GTVVADHAADVAREPASTMKTLTSLAAASVLDMGDTLPTQTFLLQAEQ 110

Query: 107 -SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
            + T   +    + L             A +   A + + A 
Sbjct: 111 GTDTVVIKGNGDMLLGAGDSDPDHVNGRAGLLTLAKNTAHAL 152


>gi|15721851|gb|AAK69828.1| beta-lactamase [Klebsiella pneumoniae]
          Length = 286

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 64/202 (31%), Gaps = 39/202 (19%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAK----------PKYSSIVIDVNKNQMT-GFKQDEP 74
           R I+L    L  ++ +   AS    +           +   I +D+   +    ++ DE 
Sbjct: 2   RYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADER 61

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQI-----------PVSKTAATQNPSKLYLKEK 123
               S  K++    +   + +    L  +I           PVS+          +L + 
Sbjct: 62  FPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEK---------HLADG 112

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNASG 181
              T  +   A+IT S N  +      + G      F   + +   ++    T    A  
Sbjct: 113 --MTVGELCAAVITMSDNSAANLLLATVGGPAGLTAFLRQIDDNVTRLDRWETELNEALP 170

Query: 182 LHDKNQITTARDQAILGILLRK 203
              ++  T A     +   LRK
Sbjct: 171 GDARDTTTPA----SMAATLRK 188


>gi|327479474|gb|AEA82784.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 348

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 3/63 (4%), Positives = 22/63 (34%), Gaps = 1/63 (1%)

Query: 86  LYIIFEYLQSKKLHLNTQIPV-SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
              + + +   +  L+ ++ + ++     +   ++      ++    +  ++  S N  +
Sbjct: 76  ALAVLQGVDDDEFRLDQRLTLEAEDKVDGSGDLVWQDNGVDYSLRDLLKEMLIESDNTAA 135

Query: 145 TAF 147
              
Sbjct: 136 NML 138


>gi|268324167|emb|CBH37755.1| conserved hypothetical protein, beta lactamase family [uncultured
           archaeon]
          Length = 463

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 12/72 (16%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119
           DVN+N +            S TK+ T  I+ + ++  ++ L+   P+ K    +   K+ 
Sbjct: 79  DVNENTIY--------EIGSTTKVFTSLILADMVEEGEISLDD--PIDKFLPKE--VKVP 126

Query: 120 LKEKTYFTTEQG 131
            ++    T +  
Sbjct: 127 TRDGKKITLQHL 138


>gi|255531815|ref|YP_003092187.1| hypothetical protein Phep_1917 [Pedobacter heparinus DSM 2366]
 gi|255344799|gb|ACU04125.1| hypothetical protein Phep_1917 [Pedobacter heparinus DSM 2366]
          Length = 403

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 11/121 (9%)

Query: 71  QDEP-RYPASLTKMMTLYIIFEYLQSKKLH----LNTQIPVSKTAATQNPSKLYLKEKTY 125
            D    YPAS  K+  +    E +   K+      ++ I  S  A     +     +   
Sbjct: 74  NDHRYFYPASTVKLAAVIFALEKINELKIKGLTAQSSMITDSAWAGQTKVTTDKTAKNGL 133

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK 185
            + E  I  ++  S ND      EFI  +E      +++K +K G Q +   N   + D 
Sbjct: 134 PSVEHYIKKILLTSDNDAFNRLFEFIGRAE------INSKLQKYGYQTSRILNRLAIGDA 187

Query: 186 N 186
            
Sbjct: 188 G 188


>gi|146281315|ref|YP_001171468.1| hypothetical protein PST_0929 [Pseudomonas stutzeri A1501]
 gi|145569520|gb|ABP78626.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 351

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 3/63 (4%), Positives = 22/63 (34%), Gaps = 1/63 (1%)

Query: 86  LYIIFEYLQSKKLHLNTQIPV-SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVS 144
              + + +   +  L+ ++ + ++     +   ++      ++    +  ++  S N  +
Sbjct: 79  ALAVLQGVDDDEFRLDQRLTLEAEDKVDGSGDLVWQDNGVDYSLRDLLKEMLIESDNTAA 138

Query: 145 TAF 147
              
Sbjct: 139 NML 141


>gi|260914760|gb|ACX54232.1| beta-lactamase blaCTX-M-15 [Escherichia coli]
          Length = 239

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|251798155|ref|YP_003012886.1| beta-lactamase [Paenibacillus sp. JDR-2]
 gi|247545781|gb|ACT02800.1| beta-lactamase [Paenibacillus sp. JDR-2]
          Length = 375

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK---EKTYFTTEQGILAL 135
           S+TK+MT     + ++  K+ LN  +    +A     + + L+          E+    +
Sbjct: 56  SMTKIMTCVAALKLVEQGKMLLNDPL----SAYLPEYADMNLRKRLPDGKLEIERAKKTI 111

Query: 136 ITR 138
           + R
Sbjct: 112 LVR 114


>gi|16506936|gb|AAL17873.1| K1 beta-lactamase OXY-2 [Klebsiella oxytoca]
          Length = 290

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 55  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 112 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 164


>gi|229196011|ref|ZP_04322763.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
 gi|228587393|gb|EEK45459.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
          Length = 327

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 57/150 (38%), Gaps = 27/150 (18%)

Query: 49  HAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQS---KKLHLNTQIP 105
           H   K +S+++  N   +T   + E    AS++K++   I  EY +     K+  + QI 
Sbjct: 8   HKDDKTTSLIVKRNGKTLTSINEKEKLPLASMSKIV---IAIEYAKQVAGGKIRKDEQIS 64

Query: 106 VSK--------------TAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFI 151
           + +              +A   +     L +    + E+ +  +I  S+N  ++   + +
Sbjct: 65  LKELEKYYVKNTDGGAHSAWLDDVKAKELVKGGQTSLEEVVKGMIHHSSNANASYLLDKL 124

Query: 152 SGSEKKFAILMSNKAKKIGM-QNTIYKNAS 180
                     ++   K++G+  +  +    
Sbjct: 125 G------VARINESLKELGLNSHDEFYPTY 148


>gi|241190540|ref|YP_002967934.1| D-alanyl-D-alanine carboxypeptidase [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240248932|gb|ACS45872.1| D-alanyl-D-alanine carboxypeptidase [Bifidobacterium animalis
           subsp. lactis Bl-04]
          Length = 490

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 7/102 (6%)

Query: 52  PKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV---- 106
           P  S+I++  +   +      D  R PAS  K +T       L            +    
Sbjct: 106 PDVSAIIMQAD-GTVVADHAADVAREPASTMKTLTSLAAASVLDMGDTLPTQTFLLQAEQ 164

Query: 107 -SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
            + T   +    + L             A +   A + + A 
Sbjct: 165 GTDTVVIKGNGDMLLGAGDSDPDHVNGRAGLLTLAKNTAHAL 206


>gi|189184698|ref|YP_001938483.1| penicillin-binding protein 4 [Orientia tsutsugamushi str. Ikeda]
 gi|189181469|dbj|BAG41249.1| penicillin-binding protein 4 [Orientia tsutsugamushi str. Ikeda]
          Length = 403

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           K D     AS+TK MT   I    +  KL L+ 
Sbjct: 77  KYDVLMPIASITKSMTAVAIMILYEQGKLKLDD 109


>gi|91791835|ref|YP_561486.1| beta-lactamase [Shewanella denitrificans OS217]
 gi|91713837|gb|ABE53763.1| beta-lactamase [Shewanella denitrificans OS217]
          Length = 616

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQI 104
           S+TK+ T   + + ++  KL L+  +
Sbjct: 85  SVTKVFTAIGVLQLMEQGKLKLDDPV 110


>gi|329964561|ref|ZP_08301615.1| penicillin-binding protein, transpeptidase domain protein
           [Bacteroides fluxus YIT 12057]
 gi|328524961|gb|EGF52013.1| penicillin-binding protein, transpeptidase domain protein
           [Bacteroides fluxus YIT 12057]
          Length = 707

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 36/126 (28%), Gaps = 26/126 (20%)

Query: 56  SIVIDVNKNQM-------------TGFKQDEP----RYPASLTKMMTLYIIFEYLQSKKL 98
           +++++V   ++                           P S  K  ++ +  E     K+
Sbjct: 265 AVLMEVATGEVKAIVNMMKANDGNYYEMNSNAISDMLEPGSTFKTASIMVALE---DGKI 321

Query: 99  HLNTQIPVSKTAATQNPSKL----YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
             +T++           SK+    + +    +        L   S   VS    +    +
Sbjct: 322 TPDTEVDTGNGIMNMYGSKMRDHNWHRGG--YGKINVTRILEVSSNVGVSYLIDKHYKDN 379

Query: 155 EKKFAI 160
            +KF  
Sbjct: 380 PQKFVD 385


>gi|270300475|gb|ACZ69281.1| Beta-lactamase [Staphylococcus aureus]
          Length = 281

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 21/154 (13%)

Query: 31  MGKILFLSIIMISMAS----ELHAK----------PKYSSIVIDVNKNQMTGFKQDEPRY 76
           M K++FL  I + +++      HAK                 +D    +   F  D+   
Sbjct: 1   MKKLIFLIAIALVLSACNSNSTHAKKLNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS +K +   I+ E +   K  LN +I ++K         L        T ++ I A +
Sbjct: 61  YASTSKAINSAILLEQIPYNK--LNKKIHINKDDIVAYSPILEKYVGKDITLKELIEASM 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           T S N  +    + I G        +  + K++G
Sbjct: 119 TYSDNTANNKIIKEIGG-----IKKVKQRLKELG 147


>gi|254486946|ref|ZP_05100151.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Roseobacter sp. GAI101]
 gi|214043815|gb|EEB84453.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Roseobacter sp. GAI101]
          Length = 497

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 41  MISMASELHAKPK----YSSIVIDVNKNQMTGF-KQDEPRYPASLTKMMTLYIIFEYL 93
            +  A++L A+ +     +  V D     M           PAS+TK +T     + L
Sbjct: 45  AVPKAADLIAQARLNGRVAFAVADAKTGNMLEEMSPSAGMPPASVTKAITALYALDTL 102


>gi|229144406|ref|ZP_04272811.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
 gi|228639037|gb|EEK95462.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
          Length = 363

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 69/187 (36%), Gaps = 37/187 (19%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASE----------LHAKPKYSSIVIDVNKNQMTGFKQ 71
           + I   I ++G I F S+     + E           H   K +S+++  N   +T   +
Sbjct: 7   VGIIAGITIVGCIAFFSVKEYVNSKEDSNYVLNYIKEHKDDKTTSLIVKRNGETLTSINE 66

Query: 72  DEPRYPASLTKMMTLYIIFEYLQS---KKLHLNTQIPVSKT--------------AATQN 114
            E    AS++K++   I  EY +     K+  + +I + +               A   +
Sbjct: 67  KEKLPLASMSKIV---IAIEYTKQVAEGKIRKDEKISLKELEKYYVKNTDGGAHPAWLDD 123

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM-QN 173
                L +    + E+ +  +I  S+N  ++   + +       A  ++   K++G+  +
Sbjct: 124 VKGKKLVKGGQTSLEEVVKGMIHYSSNANASYLLDKLG------AARINESLKELGLNSH 177

Query: 174 TIYKNAS 180
             +    
Sbjct: 178 DEFYPTY 184


>gi|21221835|ref|NP_627614.1| hypothetical protein SCO3408 [Streptomyces coelicolor A3(2)]
 gi|4808347|emb|CAB42761.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
          Length = 459

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 53  KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKM 83
           + ++ V+D+   +       D P  PAS TK+
Sbjct: 94  RRAAAVVDLTTGKRLYGLGSDAPLTPASTTKI 125


>gi|116621403|ref|YP_823559.1| beta-lactamase [Candidatus Solibacter usitatus Ellin6076]
 gi|116224565|gb|ABJ83274.1| Beta-lactamase [Candidatus Solibacter usitatus Ellin6076]
          Length = 281

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 14/119 (11%)

Query: 37  LSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTK----MMTLYIIFEY 92
           LS     +A     K   S +VI+    +  GF   +P    S+ K    M TL+++   
Sbjct: 13  LSTHFADLARPAAGKVGASVLVIE--TGERAGFHARDPFPMQSVYKFPIAMATLHLV--- 67

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLK----EKTYFTTEQGILALITRSANDVSTAF 147
             + KL L+  +P++K           ++    E    +  + I   +  S    S   
Sbjct: 68  -DTGKLKLDQPVPIAKAELAPPGLHSPIRDQHPEGATLSLREVIRFAVAESDGTASDVL 125


>gi|258655185|ref|YP_003204341.1| beta-lactamase [Nakamurella multipartita DSM 44233]
 gi|258558410|gb|ACV81352.1| beta-lactamase [Nakamurella multipartita DSM 44233]
          Length = 784

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 8/68 (11%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ-GILAL 135
            ASLTK  T  +  ++     L L+  +P       + P    L +    T  Q    + 
Sbjct: 521 MASLTKTFTAALAVQFAADGVLDLDAAVP-------ELPGVAPLPDGVTVTARQLLQHST 573

Query: 136 ITRSANDV 143
                ND 
Sbjct: 574 GLVQYNDA 581


>gi|227809514|gb|ACP40657.1| beta-lactamase [Staphylococcus aureus]
          Length = 209

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 7/113 (6%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
            +D    +   F  D+    AS +K +   I+ E +   K  LN ++ ++K         
Sbjct: 17  ALDAKSGKEVKFNSDKRFAYASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPI 74

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           L        T ++ I A +T S N  +    + I G        +  + K++G
Sbjct: 75  LEKYVGKDITLKELIEASMTYSDNTATNKIIKEIGG-----IKKVKQRLKELG 122


>gi|124005357|ref|ZP_01690198.1| beta-lactamase [Microscilla marina ATCC 23134]
 gi|123989179|gb|EAY28757.1| beta-lactamase [Microscilla marina ATCC 23134]
          Length = 229

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 17/79 (21%)

Query: 40  IMISMASELHAKPKYSSIVIDVNKNQMTGFK--------------QDEPRYPASLTKMMT 85
           ++ +       K    +IV D    Q+   K                     AS++K++T
Sbjct: 63  LVNAYLDTFQLKGASMAIVKD---GQLVYAKGYGYADKEARVKVHPGHKFRIASVSKLVT 119

Query: 86  LYIIFEYLQSKKLHLNTQI 104
              + + +  KK+ LN  +
Sbjct: 120 AVAVMKLIDEKKMALNDTV 138


>gi|60416699|emb|CAI43414.1| beta-lactamase [Klebsiella oxytoca]
          Length = 290

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 16/121 (13%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 55  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
           + +L+     T  +   A +  S N        ++ G EK     ++  A  IG  +  +
Sbjct: 112 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEK-----VTAFAHSIG--DATF 162

Query: 177 K 177
           +
Sbjct: 163 R 163


>gi|320592670|gb|EFX05100.1| beta-lactamase family protein [Grosmannia clavigera kw1407]
          Length = 415

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 44/119 (36%), Gaps = 15/119 (12%)

Query: 36  FLSIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQ--------------DEPRYPASLT 81
             +++  ++A+     P  + +V+D N N+    +               D   + AS T
Sbjct: 11  LTALVDKAVANPTTDIPGVAVVVVDRNGNE-LFTRAAGRRGVTTTELLTLDNVFWIASCT 69

Query: 82  KMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           KM+T   + + ++   L ++    V+K         + L + T    +  I   +  + 
Sbjct: 70  KMITGVAVMQLVEKGVLRMDDSSQVAKLCPELTGLTVLLPDGTTEPQKNAITLRMLLTH 128


>gi|302331468|gb|ADL21662.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
           pseudotuberculosis 1002]
          Length = 394

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 54  YSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIF-EYLQSKKL 98
           + +++ D+   ++   +  E    PAS TK++T      E     ++
Sbjct: 70  FGAMITDITTGEVVLSQNAEVALTPASSTKLLTAAAALYELGPQDRI 116


>gi|289770878|ref|ZP_06530256.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
 gi|289701077|gb|EFD68506.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
          Length = 459

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 53  KYSSIVIDVNKNQMTGF-KQDEPRYPASLTKM 83
           + ++ V+D+   +       D P  PAS TK+
Sbjct: 94  RRAAAVVDLTTGKRLYGLGSDAPLTPASTTKI 125


>gi|237749502|ref|ZP_04579982.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacter formigenes
          OXCC13]
 gi|229380864|gb|EEO30955.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacter formigenes
          OXCC13]
          Length = 473

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 9/82 (10%)

Query: 21 SIYIQRNIQLMGKILFLSIIMISMAS------ELHAKPKYS-SIVID-VNKNQM-TGFKQ 71
          S + ++    +  IL L +    + S      EL   P+ S  IV++ V+ N        
Sbjct: 5  STFCRKWFSGLFFILALPVFAQQLPSSVKYELELAGIPENSVGIVVEQVDSNVSRLTHNA 64

Query: 72 DEPRYPASLTKMMTLYIIFEYL 93
          D    PAS  K++T Y   E L
Sbjct: 65 DIAFAPASTMKVLTTYAALELL 86


>gi|289766973|ref|ZP_06526351.1| beta-lactamase [Streptomyces lividans TK24]
 gi|289697172|gb|EFD64601.1| beta-lactamase [Streptomyces lividans TK24]
          Length = 405

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 10/79 (12%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++ V DV+  + +T    D      S+TK  T   + + ++  ++ L+  I         
Sbjct: 72  AAGVADVDTGRPVTA---DLRHRVGSITKTFTAAAVLQQVEQGRIGLDAPI------GRY 122

Query: 114 NPSKLYLKEKTYFTTEQGI 132
            P  L        T    +
Sbjct: 123 LPGLLPDGRGEAVTVRMLM 141


>gi|256783090|ref|ZP_05521521.1| hydrolase [Streptomyces lividans TK24]
          Length = 372

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 10/79 (12%)

Query: 55  SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           ++ V DV+  + +T    D      S+TK  T   + + ++  ++ L+  I         
Sbjct: 39  AAGVADVDTGRPVTA---DLRHRVGSITKTFTAAAVLQQVEQGRIGLDAPI------GRY 89

Query: 114 NPSKLYLKEKTYFTTEQGI 132
            P  L        T    +
Sbjct: 90  LPGLLPDGRGEAVTVRMLM 108


>gi|291300157|ref|YP_003511435.1| peptidoglycan glycosyltransferase [Stackebrandtia nassauensis DSM
           44728]
 gi|290569377|gb|ADD42342.1| Peptidoglycan glycosyltransferase [Stackebrandtia nassauensis DSM
           44728]
          Length = 677

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/120 (10%), Positives = 36/120 (30%), Gaps = 27/120 (22%)

Query: 55  SSIVIDVNKNQMT---------------GFKQ-------DEPRYPASLTKMMTLYIIFEY 92
           +++V+D +  ++                  K        D    P S+ K     ++   
Sbjct: 350 AAVVMDADTGEVVSMASAPSYDAANPMEYDKSLRGDRATDSVVEPGSIHK---AIVVGAA 406

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
           L+   +  +++  V  T    + +               I  ++  S+N  +    + + 
Sbjct: 407 LEEGIIDRDSEPVVGPTITKADNTYRDTHPHEK--RPMTIGGILAHSSNVGTIDLADKLG 464


>gi|268317767|ref|YP_003291486.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
          anine-endopeptidase [Rhodothermus marinus DSM 4252]
 gi|262335301|gb|ACY49098.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
          anine-endopeptidase [Rhodothermus marinus DSM 4252]
          Length = 477

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 58 VIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYL 93
          V DV   ++   +  E    PAS  K++T     + L
Sbjct: 48 VADVESGRVLVAQNAEQGLLPASTHKLLTTAAALDLL 84


>gi|310822239|ref|YP_003954597.1| LgrB-like linear gramicidin synthetase subunit B protein [Stigmatella
            aurantiaca DW4/3-1]
 gi|309395311|gb|ADO72770.1| LgrB-like linear gramicidin synthetase subunit B protein [Stigmatella
            aurantiaca DW4/3-1]
          Length = 3098

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 74   PRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
                 SLTKM T   I + ++  +L L+  +
Sbjct: 2817 RVLIGSLTKMFTAVAILQLVEDGRLSLDATV 2847


>gi|316931556|ref|YP_004106538.1| beta-lactamase [Rhodopseudomonas palustris DX-1]
 gi|315599270|gb|ADU41805.1| beta-lactamase [Rhodopseudomonas palustris DX-1]
          Length = 395

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           D   + AS+TK +T     + ++  KL L+  I
Sbjct: 53  DSVFWIASMTKAITAAAAMQLVEQGKLSLDEPI 85


>gi|226227867|ref|YP_002761973.1| D-alanyl-D-alanine carboxypeptidase [Gemmatimonas aurantiaca T-27]
 gi|226091058|dbj|BAH39503.1| D-alanyl-D-alanine carboxypeptidase [Gemmatimonas aurantiaca T-27]
          Length = 545

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 44  MASELHAKPKYSSIVIDVNKN-QMTGFKQDEPRYPASLTKMMTLYIIFEYL 93
           +A+ +    ++  +++D  +N  +     D    PAS  K++T  I  ++L
Sbjct: 70  LAAPMWRNARWGILLVDAERNDTILSHDADRLFMPASNQKLLTAAIALQHL 120


>gi|115376825|ref|ZP_01464049.1| beta-lactamase, putative [Stigmatella aurantiaca DW4/3-1]
 gi|115366187|gb|EAU65198.1| beta-lactamase, putative [Stigmatella aurantiaca DW4/3-1]
          Length = 3136

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 74   PRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
                 SLTKM T   I + ++  +L L+  +
Sbjct: 2855 RVLIGSLTKMFTAVAILQLVEDGRLSLDATV 2885


>gi|108758564|ref|YP_630584.1| beta-lactamase [Myxococcus xanthus DK 1622]
 gi|108462444|gb|ABF87629.1| beta-lactamase [Myxococcus xanthus DK 1622]
          Length = 469

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           D      S+TK  T  +I + +   KL L+  I 
Sbjct: 59  DTKFRIGSITKSFTATVILQLVAEGKLQLDDPIT 92


>gi|30019834|ref|NP_831465.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
 gi|229127120|ref|ZP_04256117.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
 gi|29895379|gb|AAP08666.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
 gi|228656236|gb|EEL12077.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
          Length = 364

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 68/187 (36%), Gaps = 37/187 (19%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASE----------LHAKPKYSSIVIDVNKNQMTGFKQ 71
           + I   I ++G I F S+     + E           H   K +S+++  N   +T   +
Sbjct: 7   VGIIAGITIVGCIAFFSVKEYVNSKEDSNYVLNYIKEHKDDKTTSLIVKRNGETLTSINE 66

Query: 72  DEPRYPASLTKMMTLYIIFEYLQS---KKLHLNTQIPVSKT--------------AATQN 114
            E    AS++K+    I  EY +     K+  + QI + +               A   +
Sbjct: 67  KEKLPLASMSKI---IIAIEYAKQVAEGKIRKDEQISLKELEKYYVKNTDGGAHPAWLDD 123

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM-QN 173
                L +    + E+ +  +I  S+N  ++   + +       A  ++   K++G+  +
Sbjct: 124 VKVKELVKGGQTSLEEVVKGMIHYSSNANASYLLDKLG------AARINESLKELGLNSH 177

Query: 174 TIYKNAS 180
             +    
Sbjct: 178 DEFYPTY 184


>gi|332686541|ref|YP_004456315.1| beta-lactamase class C-like protein [Melissococcus plutonius ATCC
           35311]
 gi|332370550|dbj|BAK21506.1| beta-lactamase class C related penicillin binding protein
           [Melissococcus plutonius ATCC 35311]
          Length = 351

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 12/91 (13%)

Query: 69  FKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNT-------QIPVSKTAATQN----PS 116
             Q E  YP ASL K++T  II + +Q  KL  NT       +IP S+    ++     S
Sbjct: 79  ENQVEEIYPIASLQKILTGIIILQLIQENKLTANTRLSHFYPKIPRSQQITIRDLLNHTS 138

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAF 147
            ++++E        G  A I  + N+++ + 
Sbjct: 139 GIFMEEAEPACLLHGEQAQIDNTINNLTVSV 169


>gi|90580535|ref|ZP_01236340.1| hypothetical D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Vibrio angustum S14]
 gi|90438193|gb|EAS63379.1| hypothetical D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Photobacterium angustum S14]
          Length = 467

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 12/70 (17%)

Query: 30 LMGKILFLSIIMISMASELHAKPKYS----------SIVI-DVNKNQMTGFK-QDEPRYP 77
          +  K+L  ++I  S +S     P+ +          +++I +   N++   K  DE + P
Sbjct: 1  MFKKLLCSALITTSFSSFAAFSPQQAIEHLPKGSDVALLIVNPATNKVIYDKRADELQAP 60

Query: 78 ASLTKMMTLY 87
          AS  K +T  
Sbjct: 61 ASTQKTITAL 70


>gi|330859129|emb|CBX69483.1| hypothetical protein YEW_JC39970 [Yersinia enterocolitica W22703]
          Length = 161

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           + D     AS+TK+MT  ++ +  +   + L   +
Sbjct: 76  RPDSLIRIASITKLMTSEVMVKLAEDGTVKLTDPL 110


>gi|255964404|gb|ACU44520.1| beta-lactamase CTX-M-15 [Escherichia coli]
          Length = 229

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 40/111 (36%), Gaps = 3/111 (2%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+           
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
                 +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGTMSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|297561341|ref|YP_003680315.1| beta-lactamase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296845789|gb|ADH67809.1| Beta-lactamase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 305

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 37/106 (34%), Gaps = 5/106 (4%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
            +D    +    + DE    AS  K +T  ++ +    ++  +   +  ++     + S 
Sbjct: 67  AVDTGSGEEVEHRPDERFAYASTHKALTAALVLQQNTPEE--MEEVVTFTEEDL-VDYSP 123

Query: 118 LYLK-EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           +  +   T  T  +   A +  S N  +    E + G    F   +
Sbjct: 124 VTEQHVDTGMTLMEVADAAVRYSDNTAANLLFEELGG-PDAFEDEL 168


>gi|2982646|emb|CAA05304.1| penicillin-binding protein 1b [Streptococcus pneumoniae]
          Length = 533

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 14/67 (20%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGF----------KQ---DEPRYPASLTKMMTLY-II 89
           +  +   +P+  ++++D     + GF               D  R PAS TK +  Y I 
Sbjct: 415 LVDDATGQPEVGNVLMDNKTGAVLGFVGGRNYQTNQNNHAFDTKRSPASTTKPLLAYGIA 474

Query: 90  FEYLQSK 96
            +     
Sbjct: 475 IDQGLMG 481


>gi|269124433|ref|YP_003297803.1| hypothetical protein Tcur_0158 [Thermomonospora curvata DSM 43183]
 gi|268309391|gb|ACY95765.1| hypothetical protein Tcur_0158 [Thermomonospora curvata DSM 43183]
          Length = 259

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 135 LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ 194
           +I  S ND ++A    I G         +     +G++ T    A+G       T+ARDQ
Sbjct: 95  MIIDSDNDAASALWAQIGG--AAGLSEANE---ALGLRETT---ATGAGWGLTGTSARDQ 146

Query: 195 AILGILL 201
             L   L
Sbjct: 147 IRLLRAL 153


>gi|295428323|ref|ZP_06820952.1| beta-lactamase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|282167187|gb|ADA81203.1| Beta-lactamase [Staphylococcus aureus]
 gi|295127723|gb|EFG57360.1| beta-lactamase [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 295

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 57/158 (36%), Gaps = 14/158 (8%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMI--SMASELHA-----KPKYSSIVIDVNKNQMTGFKQD 72
           G   +++ I L+   L LS      S A EL+              +D    +   F  D
Sbjct: 11  GGFILKKLIFLIVIALVLSACNSNSSHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSD 70

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           +    AS +K +   I+ E +   K  LN ++ ++K         L        T +  I
Sbjct: 71  KRFAYASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITLKALI 128

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            A +T S N  +    + I G        +  + K++G
Sbjct: 129 EASMTYSDNTANNKIIKEIGG-----IKKVKQRLKELG 161


>gi|74422853|gb|ABA06587.1| mutant extended-spectrum beta-lactamase SHV-65 [Klebsiella
           pneumoniae]
          Length = 286

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 63/202 (31%), Gaps = 39/202 (19%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAK----------PKYSSIVIDVNKNQMT-GFKQDEP 74
           R I+L    L  ++ +   AS    +           +   I +D+   +    ++ DE 
Sbjct: 2   RYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADER 61

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQI-----------PVSKTAATQNPSKLYLKEK 123
               S  K++    +   + +    L  +I           PVS+          +L + 
Sbjct: 62  FPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEK---------HLADG 112

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNASG 181
              T  +   A IT S N  +      + G      F   + +   ++    T    A  
Sbjct: 113 --MTVGELCTAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALP 170

Query: 182 LHDKNQITTARDQAILGILLRK 203
              ++  T A     +   LRK
Sbjct: 171 GDARDTTTPA----SMAATLRK 188


>gi|149915753|ref|ZP_01904278.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Roseobacter sp. AzwK-3b]
 gi|149810335|gb|EDM70180.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Roseobacter sp. AzwK-3b]
          Length = 497

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 45 ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIF 90
          A+ L  +  YS  V+DV    +   +   E + PAS+TK +T     
Sbjct: 55 AANLGGRVTYS--VMDVKSGLILEGRGGHEGQPPASVTKAITAIYAL 99


>gi|67973168|gb|AAY84117.1| beta-lactamase [Staphylococcus aureus]
 gi|67973171|gb|AAY84119.1| beta-lactamase [Staphylococcus aureus]
          Length = 265

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 21/154 (13%)

Query: 31  MGKILFLSIIMISMAS----ELHAK----------PKYSSIVIDVNKNQMTGFKQDEPRY 76
           M K++FL ++ + +++      HAK                 +D    +   F  D+   
Sbjct: 1   MKKLIFLIVMALVLSACNSNSSHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS +K +   I+ E +   K  LN ++ ++K         L        T ++ I A +
Sbjct: 61  YASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITLKELIEASM 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           T S N  +    + I G        +  + K++G
Sbjct: 119 TYSDNTANNKIIKEIGG-----IKKVKQRLKELG 147


>gi|67973177|gb|AAY84123.1| beta-lactamase [Staphylococcus aureus]
          Length = 268

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 21/154 (13%)

Query: 31  MGKILFLSIIMISMAS----ELHAK----------PKYSSIVIDVNKNQMTGFKQDEPRY 76
           M K++FL  I + +++      HAK                 +D    +   F  D+   
Sbjct: 1   MKKLIFLIAIALVLSACNSNSPHAKKLNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS +K +   I+ E +   K  LN +I ++K         L        T ++ I A +
Sbjct: 61  YASTSKAINSAILLEQIPYNK--LNKKIHINKDDIVAYSPILEKYVGKDITLKELIEASM 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           T S N  +    + I G        +  + K++G
Sbjct: 119 TYSDNTANNKIIKEIGG-----IKKVKQRLKELG 147


>gi|257136310|gb|ACV44455.1| beta-lactamase OXY-2 [Klebsiella oxytoca]
          Length = 289

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 54  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 110

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 111 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 163


>gi|300859212|ref|YP_003784195.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686666|gb|ADK29588.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
           pseudotuberculosis FRC41]
          Length = 417

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 54  YSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIF-EYLQSKKL 98
           + +++ D+   ++   +  E    PAS TK++T      E     ++
Sbjct: 93  FGAMITDITTGEVVLSQNAEVALTPASSTKLLTAAAALYELGPQDRI 139


>gi|257870753|ref|ZP_05650406.1| beta-lactamase [Enterococcus gallinarum EG2]
 gi|257804917|gb|EEV33739.1| beta-lactamase [Enterococcus gallinarum EG2]
          Length = 420

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 16/64 (25%)

Query: 55  SSIVIDVNKNQMTGFK--------QDEPRYPA------SLTKMMTLYIIFEYLQSKKLHL 100
           S++V+     ++   K         D    PA      S+ K +T  +I   ++  KL L
Sbjct: 118 SALVV--KNGKVLLHKGYGYADKAADVKNTPATLFNIGSMQKGLTAVLIMRAIKEGKLSL 175

Query: 101 NTQI 104
              +
Sbjct: 176 TDTL 179


>gi|219920969|emb|CAQ76662.1| beta-lactamase [Klebsiella oxytoca]
          Length = 244

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 54  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 110

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 111 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 163


>gi|1513032|dbj|BAA12695.1| beta-lactamase [Klebsiella oxytoca]
 gi|4775463|emb|CAB42614.1| beta-lactamase OXY-2a [Klebsiella oxytoca]
 gi|32130557|gb|AAL78280.2| K1 beta-lactamase [Klebsiella oxytoca]
          Length = 289

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 54  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 110

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 111 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 163


>gi|300858820|ref|YP_003783803.1| penicillin-binding protein [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300686274|gb|ADK29196.1| penicillin-binding protein [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302331080|gb|ADL21274.1| Putative penicillin-binding (cell division related) protein
           [Corynebacterium pseudotuberculosis 1002]
          Length = 675

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 49/147 (33%), Gaps = 38/147 (25%)

Query: 55  SSIVIDVNKNQMTGFKQ-------------------------DEPRYPASLTKMMTLYII 89
           S++V+D    ++                                P  P S+ K++T   +
Sbjct: 333 SAVVLDSETGKIMSMANSGTINPNGNIEKQLKNGKVFDNTAVSAPFEPGSVAKIITAAGV 392

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEK-TYFTTEQGILALITRSANDVSTAFG 148
            E     K   +  + V     +   S + +K+   + T       +  +S+N  +    
Sbjct: 393 IE---DGKTTPDEVLQV---PGSIKMSGVTVKDAWEHGTVGYTTTGVFGKSSNVGTLMLA 446

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTI 175
           + +   E++F    ++   K G+ +T 
Sbjct: 447 QRLG--EERF----NDLLHKFGVGHTT 467


>gi|229544070|ref|ZP_04433129.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Bacillus coagulans 36D1]
 gi|229325209|gb|EEN90885.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Bacillus coagulans 36D1]
          Length = 495

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 44 MASELHAKPKYSSIVI----DVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYL 93
          +A  L A P    IV       +  ++   +  +    PAS  K++T     E L
Sbjct: 39 IAGILEAAPLKGGIVAISVRSADSGKLLYEQNGNTLLRPASNMKLLTAAAALETL 93


>gi|148284103|ref|YP_001248193.1| penicillin-binding protein 4* [Orientia tsutsugamushi str. Boryong]
 gi|146739542|emb|CAM79271.1| Penicillin-binding protein 4* [Orientia tsutsugamushi str. Boryong]
          Length = 403

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           K D     AS+TK MT   I    +  KL L+ 
Sbjct: 77  KYDVLMPIASITKSMTAVAIMILYEQGKLKLDD 109


>gi|302206901|gb|ADL11243.1| D-Ala-D-Ala carboxypeptidase 3 (S13) [Corynebacterium
           pseudotuberculosis C231]
 gi|308277155|gb|ADO27054.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
           pseudotuberculosis I19]
          Length = 417

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 54  YSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIF-EYLQSKKL 98
           + +++ D+   ++   +  E    PAS TK++T      E     ++
Sbjct: 93  FGAMITDITTGEVVLSQNAEVALTPASSTKLLTAAAALYELGPQDRI 139


>gi|226225919|ref|YP_002760025.1| D-alanyl-D-alanine carboxypeptidase [Gemmatimonas aurantiaca T-27]
 gi|226089110|dbj|BAH37555.1| D-alanyl-D-alanine carboxypeptidase [Gemmatimonas aurantiaca T-27]
          Length = 545

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 53  KYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMTLYIIFEYL 93
            + +IV+ +++      +  D P  PAS  K+ T  I FE L
Sbjct: 108 DWGAIVVSISRGDTLFARGADAPMVPASTMKLFTSAIAFEKL 149


>gi|84687931|ref|ZP_01015797.1| possible penicillin binding protein [Maritimibacter alkaliphilus
          HTCC2654]
 gi|84664068|gb|EAQ10566.1| possible penicillin binding protein [Rhodobacterales bacterium
          HTCC2654]
          Length = 490

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 47 ELHAKPKYSSIVIDVNKNQMTGFKQDEP-RYPASLTKMMTLYIIFEYL 93
          + +   K   +V D     +   +       PAS+ K +T    F+ L
Sbjct: 47 QANLNGKIGFVVSDAKTGLILEQRNAAVAMPPASVAKSVTALYAFDSL 94


>gi|329117559|ref|ZP_08246276.1| pentapeptide MXKDX repeat protein [Streptococcus parauberis NCFD
           2020]
 gi|326907964|gb|EGE54878.1| pentapeptide MXKDX repeat protein [Streptococcus parauberis NCFD
           2020]
          Length = 372

 Score = 37.5 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 2/104 (1%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT-QNPSKL 118
           D+   +       +P    S  K+    ++ + +   K  L  +  ++ T     N    
Sbjct: 113 DLESGKTASMNDTQPMTAGSTYKLPLNMLVVDEVAKGKYTLEQRFDITNTNYELLNEHNA 172

Query: 119 YL-KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL 161
           Y+ +     +        +  S N  + A G+ + G  K +  L
Sbjct: 173 YMAQFNGAMSIPDMQEYSLVYSENTPAYALGDRLGGMGKAYTKL 216


>gi|270291819|ref|ZP_06198034.1| beta-lactamase [Streptococcus sp. M143]
 gi|270279347|gb|EFA25189.1| beta-lactamase [Streptococcus sp. M143]
          Length = 423

 Score = 37.5 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 13/109 (11%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYI--IFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           ++  +  G  +D   Y AS+ K+   Y+    + +   +  LN+         +   S  
Sbjct: 208 LSTGKEAGVNEDSKLYAASILKL--AYLYYAQDKINQGEYTLNSNFKYIPEVNSFPGSYK 265

Query: 119 YLKEKTY--------FTTEQGILALITRSANDVSTAFGEFISG-SEKKF 158
                +         ++ +Q I  +   S N      G +++  S+  F
Sbjct: 266 PEGSGSLPKTGDNKDYSLQQLITKVTKESDNVAHNILGYYVTNQSDGAF 314


>gi|227550516|ref|ZP_03980565.1| beta-lactamase [Enterococcus faecium TX1330]
 gi|257888543|ref|ZP_05668196.1| beta-lactamase [Enterococcus faecium 1,141,733]
 gi|257897082|ref|ZP_05676735.1| beta-lactamase [Enterococcus faecium Com12]
 gi|293377305|ref|ZP_06623509.1| beta-lactamase [Enterococcus faecium PC4.1]
 gi|227180417|gb|EEI61389.1| beta-lactamase [Enterococcus faecium TX1330]
 gi|257824597|gb|EEV51529.1| beta-lactamase [Enterococcus faecium 1,141,733]
 gi|257833647|gb|EEV60068.1| beta-lactamase [Enterococcus faecium Com12]
 gi|292643997|gb|EFF62103.1| beta-lactamase [Enterococcus faecium PC4.1]
          Length = 386

 Score = 37.5 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQI 104
           S+ K MT  +I + +Q+ KL  +T++
Sbjct: 116 SIQKAMTALLILKQIQAGKLTFDTKL 141


>gi|38155781|gb|AAR12671.1| beta-lactamase [Staphylococcus aureus]
          Length = 179

 Score = 37.5 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 21/154 (13%)

Query: 31  MGKILFLSIIMISMAS----ELHAK----------PKYSSIVIDVNKNQMTGFKQDEPRY 76
           M K++FL  I + +++      HAK                 +D    +   F  D+   
Sbjct: 1   MKKLIFLIAIALVLSACNSNSPHAKKLNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS +K +   I+ E +   K  LN +I ++K         L        T ++ I A +
Sbjct: 61  YASTSKAINSAILLEQIPYNK--LNKKIHINKDDIVAYSPILEKYVGKDITLKELIEASM 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           T S N  +    + I G        +  + K++G
Sbjct: 119 TYSDNTANNKIIKEIGG-----IKKVKQRLKELG 147


>gi|257794502|ref|ZP_05643481.1| beta-lactamase [Staphylococcus aureus A9781]
 gi|295407603|ref|ZP_06817395.1| beta-lactamase [Staphylococcus aureus A8819]
 gi|537338|gb|AAA26644.1| beta-lactamase [Staphylococcus aureus]
 gi|257788474|gb|EEV26814.1| beta-lactamase [Staphylococcus aureus A9781]
 gi|270055431|gb|ACZ58924.1| Beta-lactamase [Staphylococcus aureus]
 gi|270055547|gb|ACZ59040.1| Beta-lactamase [Staphylococcus aureus]
 gi|270269137|gb|ACZ66129.1| Beta-lactamase [Staphylococcus aureus]
 gi|270299756|gb|ACZ68562.1| Beta-lactamase [Staphylococcus aureus]
 gi|270300004|gb|ACZ68810.1| Beta-lactamase [Staphylococcus aureus]
 gi|281334174|gb|ADA61258.1| Beta-lactamase [Staphylococcus aureus]
 gi|281334755|gb|ADA61839.1| Beta-lactamase [Staphylococcus aureus]
 gi|281334805|gb|ADA61889.1| Beta-lactamase [Staphylococcus aureus]
 gi|282166004|gb|ADA80024.1| Beta-lactamase [Staphylococcus aureus]
 gi|294967553|gb|EFG43590.1| beta-lactamase [Staphylococcus aureus A8819]
 gi|312831081|emb|CBX35921.1| beta-lactamase (Penicillinase) [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|320139784|gb|EFW31650.1| beta-lactamase [Staphylococcus aureus subsp. aureus MRSA131]
 gi|329723910|gb|EGG60436.1| beta-lactamase [Staphylococcus aureus subsp. aureus 21172]
          Length = 281

 Score = 37.5 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 21/154 (13%)

Query: 31  MGKILFLSIIMISMAS----ELHAK----------PKYSSIVIDVNKNQMTGFKQDEPRY 76
           M K++FL  I + +++      HAK                 +D    +   F  D+   
Sbjct: 1   MKKLIFLIAIALVLSACNSNSPHAKKLNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS +K +   I+ E +   K  LN +I ++K         L        T ++ I A +
Sbjct: 61  YASTSKAINSAILLEQIPYNK--LNKKIHINKDDIVAYSPILEKYVGKDITLKELIEASM 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           T S N  +    + I G        +  + K++G
Sbjct: 119 TYSDNTANNKIIKEIGG-----IKKVKQRLKELG 147


>gi|295133225|ref|YP_003583901.1| Beta-lactamase class C family protein [Zunongwangia profunda
           SM-A87]
 gi|294981240|gb|ADF51705.1| Beta-lactamase class C family protein [Zunongwangia profunda
           SM-A87]
          Length = 364

 Score = 37.5 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 36/107 (33%), Gaps = 29/107 (27%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYSSI------VIDVN-KNQMTGFKQDE------- 73
           +++    L + +++   +++ +A+   S I      + D      +     D        
Sbjct: 1   MKIKAFFLLIPVVLFLASTKTYAQSITSQIENYLDNLKDSEFSGTILVAHNDTIIAKRAY 60

Query: 74  ---------------PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
                              AS+TKM T   + +  + +K+ LN  I 
Sbjct: 61  GLASIEYDVKNQIETKFNIASITKMFTAVAVLQLFEQRKIALNKPIE 107


>gi|125634304|gb|ABN48406.1| beta-lactamase [Escherichia coli]
          Length = 197

 Score = 37.5 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|116626129|ref|YP_828285.1| beta-lactamase [Candidatus Solibacter usitatus Ellin6076]
 gi|116229291|gb|ABJ88000.1| beta-lactamase [Candidatus Solibacter usitatus Ellin6076]
          Length = 574

 Score = 37.5 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 24/58 (41%), Gaps = 11/58 (18%)

Query: 58  VIDVNKNQMTGF----KQDEPRY-------PASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           VID    ++  +    K D  +          S++K+ T  ++ +  +  +L ++  +
Sbjct: 46  VIDAQGRRVVAYGSLAKNDARKPGGDTVFEIGSMSKVFTSLLLMDMSRKGELVVSDPV 103


>gi|257899021|ref|ZP_05678674.1| beta-lactamase [Enterococcus faecium Com15]
 gi|257836933|gb|EEV62007.1| beta-lactamase [Enterococcus faecium Com15]
          Length = 386

 Score = 37.5 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQI 104
           S+ K MT  +I + +Q+ KL  +T++
Sbjct: 116 SIQKAMTALLILKQIQAGKLTFDTKL 141


>gi|197296842|gb|ACH59002.1| LRA-5 [uncultured bacterium BLR5]
          Length = 326

 Score = 37.5 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 47/125 (37%), Gaps = 13/125 (10%)

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPS---KLYLKEKTYFTTEQGILALITRSAND 142
              + + ++  +L L+ ++ V+        +    ++ +     T  Q I   I RS N 
Sbjct: 108 AIAVLKEIEENRLQLDRKVRVTPADVAPGWTANAAMWRRPIDR-TVAQLIEVSIIRSDNT 166

Query: 143 VSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN----QITTARDQAILG 198
            S    + + G        ++++ + +G  N    +      +N       +A D A L 
Sbjct: 167 SSDKLLQLVGGP-----AAVTHRMRALGFPNIEIVSTVREFSENRTRPNTGSAEDLARLL 221

Query: 199 ILLRK 203
           + L+K
Sbjct: 222 VQLQK 226


>gi|67973180|gb|AAY84125.1| beta-lactamase [Staphylococcus aureus]
          Length = 268

 Score = 37.5 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 21/154 (13%)

Query: 31  MGKILFLSIIMISMAS----ELHAK----------PKYSSIVIDVNKNQMTGFKQDEPRY 76
           M K++FL ++ + +++      HAK                 +D    +   F  D+   
Sbjct: 1   MKKLIFLIVMALVLSACNSNSSHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS +K +   I+ E +   K  LN ++ ++K         L        T ++ I A +
Sbjct: 61  YASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITLKELIEASM 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           T S N  +    + I G        +  + K++G
Sbjct: 119 TYSDNTANNKIIKEIGG-----IKKVKQRLKELG 147


>gi|296502393|ref|YP_003664093.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
 gi|296323445|gb|ADH06373.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
          Length = 363

 Score = 37.5 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 68/187 (36%), Gaps = 37/187 (19%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASEL----------HAKPKYSSIVIDVNKNQMTGFKQ 71
           + I   I ++G I F S+     + E           H   K +S+++  N   +T   +
Sbjct: 7   VGIIAGITIVGCIAFFSVKEYVNSKEHSNYVLNYIKEHKDDKTTSLIVKRNGETLTSINE 66

Query: 72  DEPRYPASLTKMMTLYIIFEY---LQSKKLHLNTQIPVSKT--------------AATQN 114
            E    AS++K+    I  EY   +   K+  + QI + +               A   +
Sbjct: 67  KEKLPLASMSKI---IIAIEYAKQVDEGKIRKDEQISLKELEKYYVKNTDGGAHPAWLDD 123

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM-QN 173
                L +    + E+ +  +I  S+N  ++   + +       A  ++   K++G+  +
Sbjct: 124 VKVKELVKGGQTSLEEVVKGMIHYSSNANASYLLDKLG------ATRINESLKELGLNSH 177

Query: 174 TIYKNAS 180
             +    
Sbjct: 178 DEFYPTY 184


>gi|319788139|ref|YP_004147614.1| beta-lactamase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466651|gb|ADV28383.1| beta-lactamase [Pseudoxanthomonas suwonensis 11-1]
          Length = 517

 Score = 37.5 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFK-----QDEPRYPASLTKMMTLYIIFEYLQS 95
           +  +A  +    K +++V    + ++          D     AS +K MT  ++      
Sbjct: 45  LPGIAVGVVEDGKVAAVV---TRGELAAGSGEPVTPDALFRIASNSKAMTAAVLARLADQ 101

Query: 96  KKLHLNTQIP 105
            +L  +  + 
Sbjct: 102 GRLRWDDPVT 111


>gi|172040986|ref|YP_001800700.1| hypothetical protein cur_1306 [Corynebacterium urealyticum DSM
           7109]
 gi|171852290|emb|CAQ05266.1| hypothetical protein cu1306 [Corynebacterium urealyticum DSM 7109]
          Length = 293

 Score = 37.5 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 7/28 (25%), Positives = 16/28 (57%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           AS++K++T Y     ++     L+ ++P
Sbjct: 56  ASVSKLITAYATLMAVEEGAFELDDKVP 83


>gi|206970614|ref|ZP_03231566.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1134]
 gi|229078976|ref|ZP_04211528.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
 gi|229189891|ref|ZP_04316901.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
 gi|206734250|gb|EDZ51420.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1134]
 gi|228593565|gb|EEK51374.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
 gi|228704390|gb|EEL56824.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
          Length = 363

 Score = 37.5 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 69/187 (36%), Gaps = 37/187 (19%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASE----------LHAKPKYSSIVIDVNKNQMTGFKQ 71
           + I   I ++G I F S+     + E           H   K +S+++  N   +T   +
Sbjct: 7   VGIIAGITIVGCIAFFSVKEYVNSKEDSNYVLNYIKEHKDDKTTSLIVKRNGETLTSINE 66

Query: 72  DEPRYPASLTKMMTLYIIFEYLQS---KKLHLNTQIPVSKT--------------AATQN 114
            E    AS++K++   I  EY +     K+  + +I + +               A   +
Sbjct: 67  KEKLPLASMSKIV---IAIEYAKQVAEGKIRKDEKISLKELEKYYVKNTDGGAHPAWLDD 123

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM-QN 173
                L +    + E+ +  +I  S+N  ++   + +       A  ++   K++G+  +
Sbjct: 124 VKGKELVKGGQTSLEEVVKGMIHYSSNANASYLLDKLG------AARINESLKELGLNSH 177

Query: 174 TIYKNAS 180
             +    
Sbjct: 178 DEFYPTY 184


>gi|166344061|gb|ABY86753.1| beta-lactamase CTX-M1 [Escherichia coli]
          Length = 271

 Score = 37.5 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 36  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 94

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 95  HVDGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 145


>gi|120406856|ref|YP_956685.1| beta-lactamase [Mycobacterium vanbaalenii PYR-1]
 gi|119959674|gb|ABM16679.1| beta-lactamase [Mycobacterium vanbaalenii PYR-1]
          Length = 310

 Score = 37.5 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 31/146 (21%)

Query: 57  IVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           +V+D N  Q+     ++P   AS+ K+                             ++  
Sbjct: 91  VVLDRNTGQIISNGANKPFPIASVVKL--------------------FIADDLLLQESEG 130

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176
           K  L      + +     ++ RS++D +       SG     A +++      G+  T  
Sbjct: 131 KTQLSAADRKSLD-----VMLRSSDDSAAQIFWDRSGQNAVIARVVARY----GLTGT-- 179

Query: 177 KNASGLHDKNQITTARDQAILGILLR 202
                 H     +TA D      +L 
Sbjct: 180 TAPHNGHWDVTTSTASDLVRYYDMLL 205


>gi|271970345|ref|YP_003344541.1| D-alanyl-D-alanine carboxypeptidase-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270513520|gb|ACZ91798.1| D-alanyl-D-alanine carboxypeptidase (penicillin- binding protein
           4)-like protein [Streptosporangium roseum DSM 43021]
          Length = 459

 Score = 37.5 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 54  YSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTL 86
             ++V+D            D    PAS TK++T 
Sbjct: 88  VGAVVLDAETGATLFGSGADGGVTPASTTKLVTS 121


>gi|206578104|ref|YP_002238527.1| beta-lactamase [Klebsiella pneumoniae 342]
 gi|206567162|gb|ACI08938.1| beta-lactamase [Klebsiella pneumoniae 342]
          Length = 319

 Score = 37.5 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 16/28 (57%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            ASL+K MT  ++ E ++  ++   T +
Sbjct: 86  IASLSKTMTASLLLEAIRRGEVTAQTPV 113


>gi|163914147|dbj|BAF95849.1| beta-lactamase SHV [Klebsiella pneumoniae]
          Length = 286

 Score = 37.5 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 63/202 (31%), Gaps = 39/202 (19%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAK----------PKYSSIVIDVNKNQMT-GFKQDEP 74
           R I+L    L  ++ +   AS    +           +   I +D+   +    ++ DE 
Sbjct: 2   RYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADER 61

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQI-----------PVSKTAATQNPSKLYLKEK 123
               S  K++    +   + +    L  +I           PVS+          +L + 
Sbjct: 62  FPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEK---------HLADG 112

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNASG 181
              T  +   A IT S N  +      + G      F   + +   ++    T    A  
Sbjct: 113 --MTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALS 170

Query: 182 LHDKNQITTARDQAILGILLRK 203
              ++  T A     +   LRK
Sbjct: 171 GDARDTTTPA----SMAATLRK 188


>gi|319652567|ref|ZP_08006682.1| hypothetical protein HMPREF1013_03296 [Bacillus sp. 2_A_57_CT2]
 gi|317395821|gb|EFV76544.1| hypothetical protein HMPREF1013_03296 [Bacillus sp. 2_A_57_CT2]
          Length = 474

 Score = 37.5 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           P   ASL+K MT   + +     ++ L+
Sbjct: 67  PFPIASLSKSMTALAVLQLADKGQIDLD 94


>gi|269103417|ref|ZP_06156114.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae
          subsp. damselae CIP 102761]
 gi|268163315|gb|EEZ41811.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae
          subsp. damselae CIP 102761]
          Length = 464

 Score = 37.5 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 31/70 (44%), Gaps = 12/70 (17%)

Query: 30 LMGKILFLSIIMISMASELHAKPKYS----------SIVI-DVNKNQMTGFKQ-DEPRYP 77
          +  ++L +S++  S+ +     P+ +          +++I D    ++   ++ D  + P
Sbjct: 1  MFKQLLCVSLLATSLPTLAAFNPQAAIAKLPQGHDLALLIKDPATGKIIYQQRTDNLQAP 60

Query: 78 ASLTKMMTLY 87
          AS  K +T  
Sbjct: 61 ASTQKTITAL 70


>gi|238753036|ref|ZP_04614493.1| Penicillin-binding protein ampH [Yersinia rohdei ATCC 43380]
 gi|238708757|gb|EEQ01018.1| Penicillin-binding protein ampH [Yersinia rohdei ATCC 43380]
          Length = 380

 Score = 37.5 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           + D     AS+TK+MT  ++ +  +   + L   +
Sbjct: 80  RPDSLIRIASITKLMTSEVMVKMAEDGTVKLTDPL 114


>gi|256393398|ref|YP_003114962.1| beta-lactamase [Catenulispora acidiphila DSM 44928]
 gi|256359624|gb|ACU73121.1| beta-lactamase [Catenulispora acidiphila DSM 44928]
          Length = 464

 Score = 37.5 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 10/76 (13%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP--VSKTAATQNP 115
           V+++N         D      S+TK +T  +  + + +  + L+  +   V + A +   
Sbjct: 44  VLNLNTG--VTATPDSLFQIGSITKTLTATLTMQLVDAGLVDLDEPVRTYVPELAVSDR- 100

Query: 116 SKLYLKEKTYFTTEQG 131
                +     T  Q 
Sbjct: 101 -----EAAETVTVRQL 111


>gi|9910644|sp|O08337|BLA8_ECOLX RecName: Full=Beta-lactamase SHV-8; Flags: Precursor
 gi|1928922|gb|AAB51384.1| beta-lactamase [Escherichia coli]
          Length = 286

 Score = 37.2 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 63/202 (31%), Gaps = 39/202 (19%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAK----------PKYSSIVIDVNKNQMT-GFKQDEP 74
           R I+L    L  ++ +   AS    +           +   I +D+   +    ++ DE 
Sbjct: 2   RYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADER 61

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQI-----------PVSKTAATQNPSKLYLKEK 123
               S  K++    +   + +    L  +I           PVS+          +L + 
Sbjct: 62  FPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEK---------HLADG 112

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNASG 181
              T  +   A IT S N  +      + G      F   + +   ++    T    A  
Sbjct: 113 --MTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALP 170

Query: 182 LHDKNQITTARDQAILGILLRK 203
              +N  T A     +   LRK
Sbjct: 171 GDARNTTTPA----SMAATLRK 188


>gi|153809772|ref|ZP_01962440.1| hypothetical protein RUMOBE_00153 [Ruminococcus obeum ATCC 29174]
 gi|149833950|gb|EDM89030.1| hypothetical protein RUMOBE_00153 [Ruminococcus obeum ATCC 29174]
          Length = 570

 Score = 37.2 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 55/151 (36%), Gaps = 29/151 (19%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPRYPASLTK--MMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           ++   +D+     +    ++    AS+ K  +M    +++ L    ++ +    VS    
Sbjct: 336 WAIAAMDLKTQAYSTVNAEQSMQSASVIKAFIMAA--VYDKL----IYPDEGTTVSSDYE 389

Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIG 170
           +              T +  + ++IT S ND +      + G + +  A +++   ++  
Sbjct: 390 S--------------TLKPLLTSMITVSDNDSANELVRKLGGGDFQTGAAIVNEFCQERN 435

Query: 171 MQNTI----YKNASGLHDKNQITTARDQAIL 197
             +T     +  +      +  T+A D   L
Sbjct: 436 YTSTHLGREFLASD--PTDDNYTSASDCCRL 464


>gi|251981|gb|AAB22638.1| beta-lactamase, penicillin amido-beta-lactam hydrolase {EC 3.5.2.6}
           [Escherichia coli, strain MEN-1, Peptide Plasmid, 263
           aa]
          Length = 263

 Score = 37.2 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 28  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 86

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 87  HVDGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 137


>gi|52858439|gb|AAU89132.1| extended spectrum beta lactamase PER-3 [Aeromonas caviae]
          Length = 308

 Score = 37.2 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 76/229 (33%), Gaps = 27/229 (11%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK--LYLKEKTYFT--T 128
           E     S+ K+    ++   +   KL LN  + V++    QN     +   +   F+   
Sbjct: 65  EKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFSVPV 124

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK---NASGLHDK 185
           +Q +   ++ S N       E + G        + +  + +G++ T            D+
Sbjct: 125 QQLLQYSVSLSDNVACDLLFELVGGP-----AALHDYIQSMGIKETAVVANEAQMHADDQ 179

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRK---FRYRNRIITNHNKLLNKMH------- 235
            Q             + K F Q  +     +   +++     T   +L   +        
Sbjct: 180 VQYQNWTSM-KGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAH 238

Query: 236 --NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ-ERDQKAL 281
                GIK G T  +  ++   L     P++  V    +++  R  +A+
Sbjct: 239 KTGTSGIKAGKT-AATNDLGIILLPDGRPLLVAVFVKDSAESSRTNEAI 286


>gi|325673417|ref|ZP_08153108.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus equi ATCC
           33707]
 gi|325555438|gb|EGD25109.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus equi ATCC
           33707]
          Length = 403

 Score = 37.2 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
            E     S TK MT  +I + +Q  K+ L+   PVSK        +  +      T EQ 
Sbjct: 92  AEHVRIGSNTKTMTGTVILQLVQEGKIKLDD--PVSKF-------RPDVPNGDNITIEQL 142


>gi|309805079|ref|ZP_07699132.1| hypothetical protein HMPREF9213_1210 [Lactobacillus iners LactinV
           09V1-c]
 gi|308165533|gb|EFO67763.1| hypothetical protein HMPREF9213_1210 [Lactobacillus iners LactinV
           09V1-c]
          Length = 302

 Score = 37.2 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 33/169 (19%)

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            L   T +     I  ++  ++ND +    + +          ++  A ++G ++T   N
Sbjct: 146 GLVVNTSYAYPFLIQQMMYHNSNDAANILVKVLK------LEYINKVAAELGAKSTKIIN 199

Query: 179 ASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNID 238
           +    D  Q TTA    I   L R+                 N I+    +LLN   N  
Sbjct: 200 SFDQKDVGQTTTADMITIFTKLYRRQILTVNDC---------NLIL----RLLNTYPN-K 245

Query: 239 GIKTG--------YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           G+  G           N+   +V +        +   +G    + R  +
Sbjct: 246 GLAAGIPGICHYISDDNASCCLVNT---NGKVYIIAAIGG--DKNRFNQ 289


>gi|300869388|ref|ZP_07113975.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300332615|emb|CBN59173.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 433

 Score = 37.2 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 60/139 (43%), Gaps = 11/139 (7%)

Query: 74  PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133
           PR PASL K+     +   +  +K+++N ++ V+    T++ S+  ++ +  +  +  + 
Sbjct: 213 PRSPASLIKVPVAVALMHKVTKEKININEEVYVNPGNYTEDASE--IRSRKRYPLKILVE 270

Query: 134 ALITRSANDVSTAFGEFISGS------EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQ 187
            +I  S+N  +    +++         E +   +    +K +G +   +   SG    N+
Sbjct: 271 EMIDHSSNIATNELMDYLGTDYINQVLENRGYQVTRVHSKLMGERTMPFNVGSG---PNR 327

Query: 188 ITTARDQAILGILLRKNFP 206
           +T+     ++  +     P
Sbjct: 328 MTSNELTEMMVQIYNHEMP 346


>gi|255964399|gb|ACU44517.1| beta-lactamase CTX-M-15 [Escherichia coli]
          Length = 226

 Score = 37.2 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|254927435|gb|ACT85950.1| beta-lactamase CTX-M-15 [Escherichia coli]
          Length = 223

 Score = 37.2 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 40/111 (36%), Gaps = 3/111 (2%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+           
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
                 +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGTMSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|227539873|ref|ZP_03969922.1| serine family D-Ala-D-Ala carboxypeptidase [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227240151|gb|EEI90166.1| serine family D-Ala-D-Ala carboxypeptidase [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 440

 Score = 37.2 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 6/71 (8%)

Query: 36  FLSIIMISMASE-LHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQ 94
           F+  I IS   E ++AK   S+  ID+  N++   +  + R   S++K  T  ++ +  +
Sbjct: 41  FMGSIAISQNGERVYAK---SAGYIDLE-NKIKANENSKYR-IGSISKTFTTVLVLKAAE 95

Query: 95  SKKLHLNTQIP 105
            KKL L+  I 
Sbjct: 96  DKKLSLDQTIK 106


>gi|123441730|ref|YP_001005714.1| beta-lactam binding protein AmpH [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332162340|ref|YP_004298917.1| beta-lactam binding protein AmpH [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|122088691|emb|CAL11494.1| putative penicillin-binding protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|325666570|gb|ADZ43214.1| beta-lactam binding protein AmpH [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 380

 Score = 37.2 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           + D     AS+TK+MT  ++ +  +   + L   +
Sbjct: 80  RPDSLIRIASITKLMTSEVMVKLAEDGTVKLTDPL 114


>gi|313902169|ref|ZP_07835578.1| beta-lactamase [Thermaerobacter subterraneus DSM 13965]
 gi|313467569|gb|EFR63074.1| beta-lactamase [Thermaerobacter subterraneus DSM 13965]
          Length = 378

 Score = 37.2 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 46/141 (32%), Gaps = 18/141 (12%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKM-MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           D+      G  + EP + AS  K+ + LY+    + + +  ++ +I           + +
Sbjct: 150 DLQTGATWGINEREPIHAASTIKVPLVLYV-NHQVAAGRARMDDRIVYEPDRDLTGGAGI 208

Query: 119 YLK---EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
             +       ++        IT S N  +                 +    +++G +   
Sbjct: 209 LQRDGFPGKSYSLRVLTNLSITISDNVTTNMLFRHFGK------DNVGEFMRRLGGEVIF 262

Query: 176 YKNASGLHDKNQITTARDQAI 196
                      +I+TARD  I
Sbjct: 263 -------PGGRRISTARDMGI 276


>gi|67973174|gb|AAY84121.1| beta-lactamase [Staphylococcus aureus]
          Length = 264

 Score = 37.2 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 21/154 (13%)

Query: 31  MGKILFLSIIMISMAS----ELHAK----------PKYSSIVIDVNKNQMTGFKQDEPRY 76
           M K++FL ++ + +++      HAK                 +D    +   F  D+   
Sbjct: 1   MKKLIFLIVMALVLSACNSNSSHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS +K +   I+ E +   K  LN ++ ++K         L        T ++ I A +
Sbjct: 61  YASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITLKELIEASM 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           T S N  +    + I G        +  + K++G
Sbjct: 119 TYSDNTANNKIIKEIGG-----IKKVKQRLKELG 147


>gi|318606407|emb|CBY27905.1| penicillin-binding protein AmpH [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 376

 Score = 37.2 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           + D     AS+TK+MT  ++ +  +   + L   +
Sbjct: 76  RPDSLIRIASITKLMTSEVMVKLAEDGTVKLTDPL 110


>gi|302559299|ref|ZP_07311641.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus
           Tu4000]
 gi|302476917|gb|EFL40010.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus
           Tu4000]
          Length = 440

 Score = 37.2 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 3/48 (6%)

Query: 49  HAKPKYSSIVIDVNKNQMTGFKQD---EPRYPASLTKMMTLYIIFEYL 93
            A    S+ V+DV              +   PAS TK+ T       +
Sbjct: 65  PALGDRSAAVVDVATGTRLYGTGPGTGKALTPASTTKIATAVAALSAM 112


>gi|229043550|ref|ZP_04191259.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
 gi|228725772|gb|EEL77020.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
          Length = 363

 Score = 37.2 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 68/187 (36%), Gaps = 37/187 (19%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASE----------LHAKPKYSSIVIDVNKNQMTGFKQ 71
           + I   I ++G I F S+     + E           H   K +S+++  N   +T   +
Sbjct: 7   VGIIAGITIVGCIAFFSVKEYVNSKEDSNYVLNYIKEHKDDKTTSLIVKRNGETLTSINE 66

Query: 72  DEPRYPASLTKMMTLYIIFEY---LQSKKLHLNTQIPVSKT--------------AATQN 114
            E    AS++K+    I  EY   +   K+  + QI + +               A   +
Sbjct: 67  KEKLPLASMSKI---IIAIEYAKQVDEGKIRKDEQISLKELEKYYVKNTDGGAHPAWLDD 123

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM-QN 173
                L +    + E+ +  +I  S+N  ++   + +       A  ++   K++G+  +
Sbjct: 124 VKVKELVKGGQTSLEEVVKGMIHYSSNANASYLLDKLG------ATRINESLKELGLNSH 177

Query: 174 TIYKNAS 180
             +    
Sbjct: 178 DEFYPTY 184


>gi|238788607|ref|ZP_04632399.1| Penicillin-binding protein ampH [Yersinia frederiksenii ATCC 33641]
 gi|238723202|gb|EEQ14850.1| Penicillin-binding protein ampH [Yersinia frederiksenii ATCC 33641]
          Length = 380

 Score = 37.2 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           + D     AS+TK+MT  ++ +  +   + L   +
Sbjct: 80  RPDSLIRIASITKLMTSEVMVKLAEDGTVKLTDPL 114


>gi|238796811|ref|ZP_04640316.1| Penicillin-binding protein ampH [Yersinia mollaretii ATCC 43969]
 gi|238719299|gb|EEQ11110.1| Penicillin-binding protein ampH [Yersinia mollaretii ATCC 43969]
          Length = 380

 Score = 37.2 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           + D     AS+TK+MT  ++ +      + L   +
Sbjct: 80  RPDSLIRIASITKLMTSEVMVKLADDGTVKLTDPL 114


>gi|224537216|ref|ZP_03677755.1| hypothetical protein BACCELL_02093 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224521172|gb|EEF90277.1| hypothetical protein BACCELL_02093 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 475

 Score = 37.2 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 47 ELHAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKK 97
          +L A       V D+   +    ++ D+   PAS  K++T      +  + +
Sbjct: 42 QLPAGSNVGISVYDLTTGKSLYTYQSDKLSRPASTMKLLTTITALAHPDADE 93


>gi|127512890|ref|YP_001094087.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Shewanella loihica PV-4]
 gi|126638185|gb|ABO23828.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Shewanella loihica PV-4]
          Length = 543

 Score = 37.2 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 51  KPKYSSIVI---DVNKNQMTGFKQ-DEPRYPASLTKMMTL 86
            P +S + I   D++ N++      D    PAS  K++T 
Sbjct: 83  APPHSQLSIFAQDLSNNEILYQHNADTLVLPASTQKLLTA 122


>gi|90412474|ref|ZP_01220477.1| hypothetical
           D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-
           endopeptidase [Photobacterium profundum 3TCK]
 gi|90326511|gb|EAS42917.1| hypothetical
           D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-
           endopeptidase [Photobacterium profundum 3TCK]
          Length = 467

 Score = 37.2 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 57  IVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
           +++D   NQ+   +++E    PAS  K++T  +  +   +     NT + VS    
Sbjct: 39  MIVDPATNQVLFSQREEQLQAPASTQKVITA-LAAKLYLNDNYRFNTDLEVSTNDV 93


>gi|238786269|ref|ZP_04630212.1| Penicillin-binding protein ampH [Yersinia bercovieri ATCC 43970]
 gi|238712813|gb|EEQ04882.1| Penicillin-binding protein ampH [Yersinia bercovieri ATCC 43970]
          Length = 380

 Score = 37.2 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           + D     AS+TK+MT  ++ +      + L   +
Sbjct: 80  RPDSLIRIASITKLMTSEVMVKLADDGTVKLTDPL 114


>gi|330446050|ref|ZP_08309702.1| beta-lactamase CARB-6 [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490241|dbj|GAA04199.1| beta-lactamase CARB-6 [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 294

 Score = 37.2 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 26/150 (17%)

Query: 24  IQRNIQLMGKILFLSIIMISMAS------------ELHAKPKYSSIVIDVNKNQMTGFKQ 71
           + R I +      L+   +S+AS            +L AK   S  V++ N         
Sbjct: 9   VSRVITMAMGTASLTFSAMSVASTNIDSAIKHAEQQLGAKVGVS--VLNAN-GDSLYGYN 65

Query: 72  DEPRYPASLTKMMTLYIIF---EYLQSKKLH---LNTQIPVSKTAATQNPSKLYLKEKTY 125
            E R+P     +M+ +      + L   ++    ++   PV+  A          K  T 
Sbjct: 66  SEQRFP-----LMSTFKTLACAKLLHDNQITKGMMDKTYPVTAEAILDYAPIFKDKVGTE 120

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSE 155
            + +    A +T S N  +      I G+E
Sbjct: 121 VSLKDACFATMTTSDNSAANFVLAHIGGAE 150


>gi|91217767|ref|ZP_01254723.1| Beta-lactamase class C family protein [Psychroflexus torquis ATCC
           700755]
 gi|91184105|gb|EAS70492.1| Beta-lactamase class C family protein [Psychroflexus torquis ATCC
           700755]
          Length = 362

 Score = 37.2 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           K D     AS+TK  T   I +  +  K+ LNT I
Sbjct: 73  KTDTKFNIASITKTFTAVAILQLHEEGKIDLNTPI 107


>gi|285019199|ref|YP_003376910.1| beta-lactamase class a protein [Xanthomonas albilineans GPE PC73]
 gi|283474417|emb|CBA16918.1| putative beta-lactamase class a protein [Xanthomonas albilineans]
          Length = 296

 Score = 37.2 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/91 (13%), Positives = 31/91 (34%), Gaps = 2/91 (2%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAATQNPS 116
           ++D    Q  G ++ E     S  K + +  + + +   ++ L+ Q+ V +    +  P 
Sbjct: 54  LLDSGTGQRIGRREQERFPLCSTFKFVLVVAVLQRVDRGEIGLDQQVRVRAADVVSYAPV 113

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAF 147
                     + +    A +  S    +   
Sbjct: 114 TKP-HVGGTLSVDALCRAAMIFSDGGAANLL 143


>gi|195765005|gb|ACG50811.1| extended-spectrum beta-lactamase PER-1 [Acinetobacter baumannii]
          Length = 187

 Score = 37.2 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 40/106 (37%), Gaps = 9/106 (8%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK--LYLKEKTYFT--T 128
           E     S+ K+    ++   +   KL LN  + V++    QN     +   +   F+   
Sbjct: 5   EKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDQFSVPV 64

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174
           +Q +   ++ S N       E + G        + +  + +G++ T
Sbjct: 65  QQLLQYSVSHSDNVACDLLFELVGGP-----AALHDYIQSMGIKET 105


>gi|291621299|dbj|BAI94487.1| beta-lactamase SHV-133 [Klebsiella pneumoniae]
          Length = 286

 Score = 37.2 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 86/279 (30%), Gaps = 55/279 (19%)

Query: 26  RNIQLMGKILFLSIIMISMASELHAK----------PKYSSIVIDVNKNQMT-GFKQDEP 74
           R I+L    L  ++ +   AS    +           +   I +D+   +    ++ DE 
Sbjct: 2   RYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADER 61

Query: 75  RYPASLTKMMTLYIIFEYLQSKKLHLNTQI-----------PVSKTAATQNPSKLYLKEK 123
               S  K++    +   + +    L  +I           PVS+          +L + 
Sbjct: 62  FPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEK---------HLADG 112

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYKNASG 181
              T  +   A IT S N  +      + G      F   + +   ++    T    A  
Sbjct: 113 --MTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALP 170

Query: 182 LHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM--HNIDG 239
              ++  T A     +   LRK         + ++   R++       LL  M    + G
Sbjct: 171 GDARDTTTPA----SMAATLRK-------LLTSQRLSARSQRQ-----LLQWMVDDGVAG 214

Query: 240 IKTGYTRNSGFNIV--TSLRYKDDPIVAVVMGMPTSQER 276
                   +G+ I   T    +    +  ++G     ER
Sbjct: 215 PLIRSVLPAGWFIADKTGAGERGARGIVALLGPNNKAER 253


>gi|256838489|ref|ZP_05543999.1| cephalosporinase [Parabacteroides sp. D13]
 gi|256739408|gb|EEU52732.1| cephalosporinase [Parabacteroides sp. D13]
          Length = 300

 Score = 37.2 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 4/76 (5%)

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPS----KLYLKEKTYFTTEQGILALITRSAN 141
              +  ++ +  + LN  I   +    ++      K+Y K +   T  +     +  S N
Sbjct: 71  ALTVAHWIDNNDMSLNDSIAFGENDLNEDTYSPMLKMYGKSRNAMTVRELFEWSLVESDN 130

Query: 142 DVSTAFGEFISGSEKK 157
           + +    + I G+   
Sbjct: 131 NAADILLKRIGGTSGA 146


>gi|255619634|ref|XP_002540033.1| D-alanyl-D-alanine carboxypeptidase, putative [Ricinus communis]
 gi|223499826|gb|EEF22350.1| D-alanyl-D-alanine carboxypeptidase, putative [Ricinus communis]
          Length = 256

 Score = 37.2 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           D   Y ASLTK +  Y + + ++  KL L+T I
Sbjct: 58  DTVMYGASLTKAVFAYTVMQLVEEGKLDLDTSI 90


>gi|32470368|ref|NP_863283.1| beta-lactamase [Staphylococcus aureus]
 gi|49398113|ref|YP_031712.1| beta-lactamase precursor [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|253730885|ref|ZP_04865050.1| beta-lactamase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|297208855|ref|ZP_06925262.1| beta-lactamase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300913069|ref|ZP_07130505.1| beta-lactamase [Staphylococcus aureus subsp. aureus TCH70]
 gi|21205819|dbj|BAB96510.1| beta-lactamase [Staphylococcus aureus]
 gi|49168444|emb|CAG43271.1| beta-lactamase precursor [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|67973206|gb|AAY84140.1| beta-lactamase [Staphylococcus aureus]
 gi|253725366|gb|EES94095.1| beta-lactamase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|270055319|gb|ACZ58812.1| Beta-lactamase [Staphylococcus aureus]
 gi|270055407|gb|ACZ58900.1| Beta-lactamase [Staphylococcus aureus]
 gi|270269021|gb|ACZ66013.1| Beta-lactamase [Staphylococcus aureus]
 gi|270269182|gb|ACZ66174.1| Beta-lactamase [Staphylococcus aureus]
 gi|270299947|gb|ACZ68753.1| Beta-lactamase [Staphylococcus aureus]
 gi|270299984|gb|ACZ68790.1| Beta-lactamase [Staphylococcus aureus]
 gi|281334970|gb|ADA62054.1| Beta-lactamase [Staphylococcus aureus]
 gi|296886504|gb|EFH25430.1| beta-lactamase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300885622|gb|EFK80831.1| beta-lactamase [Staphylococcus aureus subsp. aureus TCH70]
 gi|302334339|gb|ADL24531.1| beta-lactamase precursor, BlaZ [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 281

 Score = 37.2 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 21/154 (13%)

Query: 31  MGKILFLSIIMISMAS----ELHAK----------PKYSSIVIDVNKNQMTGFKQDEPRY 76
           M K++FL ++ + +++      HAK                 +D    +   F  D+   
Sbjct: 1   MKKLIFLIVMALVLSACNSNSSHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS +K +   I+ E +   K  LN ++ ++K         L        T ++ I A +
Sbjct: 61  YASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITLKELIEASM 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           T S N  +    + I G        +  + K++G
Sbjct: 119 TYSDNTANNKIIKEIGG-----IKKVKQRLKELG 147


>gi|238761961|ref|ZP_04622934.1| Penicillin-binding protein ampH [Yersinia kristensenii ATCC 33638]
 gi|238699689|gb|EEP92433.1| Penicillin-binding protein ampH [Yersinia kristensenii ATCC 33638]
          Length = 382

 Score = 37.2 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           + D     AS+TK+MT  ++ +  +   + L   +
Sbjct: 82  RPDSLIRIASITKLMTSEVMVKLAEDGTVKLTDPL 116


>gi|209413818|emb|CAQ42481.2| CTX-M-78 beta-lactamase [Kluyvera georgiana]
          Length = 291

 Score = 37.2 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 62/162 (38%), Gaps = 18/162 (11%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHA-KPKYSSI-----------VID-VNKNQMTGFK 70
           ++R I +    + L +  + + ++ +  + K +++           +I+  +  Q    +
Sbjct: 6   VRRAILMTTACVSLLLASVPLYAQANDIQQKLAALEKSSGGRLGVALINTADNTQTLY-R 64

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV-SKTAATQNPSKLYLKEKTYFTTE 129
            DE     S +K+M    + +  +++K  L+ ++ + S      NP        T  T  
Sbjct: 65  ADERFAMCSTSKVMAAAAVLKQSETQKDLLSQRVEIKSSDLINYNPIAEKHVNGT-MTLG 123

Query: 130 QGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           +   A +  S N         + G  K   FA ++ +   ++
Sbjct: 124 ELSAAALQYSDNTAMNKLIAHLGGPGKVTAFARVIGDDTFRL 165


>gi|260062086|ref|YP_003195166.1| beta-lactamase [Robiginitalea biformata HTCC2501]
 gi|88783648|gb|EAR14819.1| beta-lactamase precursor [Robiginitalea biformata HTCC2501]
          Length = 363

 Score = 37.2 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           K D+     S+TK  T   I + ++  +LHL   +
Sbjct: 76  KPDQVFQIGSMTKQFTAIAILKLMEEGRLHLEDDV 110


>gi|148258126|ref|YP_001242711.1| putative penicillin binding protein [Bradyrhizobium sp. BTAi1]
 gi|146410299|gb|ABQ38805.1| Putative penicillin binding protein [Bradyrhizobium sp. BTAi1]
          Length = 422

 Score = 37.2 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 44/158 (27%), Gaps = 41/158 (25%)

Query: 44  MASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYP--------------ASLTKMMTLYII 89
            A E+ AK    ++V      ++  +K      P              AS+TK M     
Sbjct: 47  FAREIAAKRVPGAVVAIARDGKLVHYKAYGQLDPVKGTPMPLDAIFALASMTKPMAAVGA 106

Query: 90  FEYLQSKKLHL------------NTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL---A 134
              ++  +L L            + ++ V      +  +  +  ++              
Sbjct: 107 LTLMEQGRLPLQAKLADYYPAFADMKVGV----VQEGGALQFEPQRRPILIHDLYRHTSG 162

Query: 135 LITRSANDVSTAFGE--------FISGSEKKFAILMSN 164
           L+     D ++             I G  + F   ++ 
Sbjct: 163 LMYGGRPDSASPVARLYPDGIAPAIEGDTQAFIERLTK 200


>gi|312139277|ref|YP_004006613.1| beta-lactamase [Rhodococcus equi 103S]
 gi|311888616|emb|CBH47928.1| putative beta-lactamase [Rhodococcus equi 103S]
          Length = 421

 Score = 37.2 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131
            E     S TK MT  +I + +Q  K+ L+   PVSK        +  +      T EQ 
Sbjct: 110 AEHVRIGSNTKTMTGTVILQLVQEGKIKLDD--PVSKF-------RPDVPNGDNITIEQL 160


>gi|251809771|ref|ZP_04824244.1| beta-lactamase [Staphylococcus epidermidis BCM-HMP0060]
 gi|251806711|gb|EES59368.1| beta-lactamase [Staphylococcus epidermidis BCM-HMP0060]
          Length = 281

 Score = 37.2 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 59/155 (38%), Gaps = 23/155 (14%)

Query: 31  MGKILFLSIIMISMAS----ELHAK----------PKYSSIVIDVNKNQMTGFKQDEPRY 76
           M K++FL +I + +++      HA+                 +D    +   F  D+   
Sbjct: 1   MKKLIFLIVIALVLSACNSNSSHAQELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK-EKTYFTTEQGILAL 135
            AS +K +   I+ E +   K  LN ++ ++K       S +  K      T ++ I A 
Sbjct: 61  YASTSKAINSAILLEQVPYNK--LNKKVHINKDDI-VGYSPILEKYVGKDITLKELIEAS 117

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           +T S N  +    + I G        +    K++G
Sbjct: 118 MTYSDNTANNKIIKEIGG-----IKKVKQHLKELG 147


>gi|194364121|ref|YP_002026731.1| beta-lactamase [Stenotrophomonas maltophilia R551-3]
 gi|194346925|gb|ACF50048.1| beta-lactamase [Stenotrophomonas maltophilia R551-3]
          Length = 517

 Score = 37.2 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 62  NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +  ++     D     AS +K MT  ++   +Q  KL  +  +
Sbjct: 61  DGGRI---DDDTLFKIASNSKAMTAALLARLVQQGKLRWDDPV 100


>gi|38234266|ref|NP_940033.1| hypothetical protein DIP1695 [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200528|emb|CAE50224.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 273

 Score = 37.2 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 53/156 (33%), Gaps = 17/156 (10%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+ V+    +++T       RY  AS+TK+++ Y +   ++     L+T  P     AT 
Sbjct: 17  SAAVV--TSDEVTTAGDGNIRYELASVTKLLSTYAVLIAVEEGAFALDT--PCGPEGATV 72

Query: 114 N-----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168
                  S +  +        +      +     ++         ++  FA  +     +
Sbjct: 73  RHLLAHASGVGFRSTDACKAPEQRRIYSSYGFELLADVIAHE---ADMPFAQYLDEAVCQ 129

Query: 169 -IGMQNTIYKNASGLHDKNQITTARDQAILGILLRK 203
            IGM +T      G       +T  D  +    + +
Sbjct: 130 PIGMTHT---QLWGSAGHESYSTVNDLVLFAREILQ 162


>gi|238794256|ref|ZP_04637870.1| Penicillin-binding protein ampH [Yersinia intermedia ATCC 29909]
 gi|238726438|gb|EEQ17978.1| Penicillin-binding protein ampH [Yersinia intermedia ATCC 29909]
          Length = 380

 Score = 37.2 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           + D     AS+TK+MT  ++ +      + L   +
Sbjct: 80  RPDSLIRIASITKLMTSEVMVKLADDGTVKLTDPL 114


>gi|312959051|ref|ZP_07773570.1| penicillin-binding protein [Pseudomonas fluorescens WH6]
 gi|311286821|gb|EFQ65383.1| penicillin-binding protein [Pseudomonas fluorescens WH6]
          Length = 580

 Score = 37.2 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 45/158 (28%), Gaps = 41/158 (25%)

Query: 53  KYSSIVIDVNKNQMTG------FKQDEPR----------------YPASLTKM--MTLYI 88
             S +++DV   ++        +  +  R                 P S  K   M+   
Sbjct: 243 AGSLVIMDVKTGEILAMVNQPTYNPNNRRNLQPAMMRNRAMIDVFEPGSTMKAISMSA-- 300

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
               L++ +   + ++ V           +    +T          ++  S+N   +   
Sbjct: 301 ---ALETGRWKPSDKVEVYPGTLQLGKYTIRDVSRTEGPVLDL-TGILINSSNVGMSKVA 356

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
             I G          + A+KIG+        +GL    
Sbjct: 357 FDIGGETIY------HLAQKIGL-----GQPTGLDFPG 383


>gi|329851458|ref|ZP_08266215.1| beta-lactamase [Asticcacaulis biprosthecum C19]
 gi|328840304|gb|EGF89876.1| beta-lactamase [Asticcacaulis biprosthecum C19]
          Length = 157

 Score = 37.2 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 14/62 (22%)

Query: 56  SIVIDVNKNQMTGFK-------QDEPRYP------ASLTKMMTLYIIFEYLQSKKLHLNT 102
           +I + ++  Q+   +        ++P  P      ASLTK +  Y   + +   KL+L+ 
Sbjct: 39  AIAV-IDNGQVAYAQAYGIRNTNNDPLTPDTIMYGASLTKTVMAYTALQLVDQGKLNLDA 97

Query: 103 QI 104
            I
Sbjct: 98  PI 99


>gi|291297998|ref|YP_003509276.1| beta-lactamase [Stackebrandtia nassauensis DSM 44728]
 gi|290567218|gb|ADD40183.1| beta-lactamase [Stackebrandtia nassauensis DSM 44728]
          Length = 455

 Score = 37.2 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 17/33 (51%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           D      S+TK+ T  ++   +++ +L L+  +
Sbjct: 56  DAVFQIGSITKVWTAALVMRLVEAGELDLDAPV 88


>gi|289581651|ref|YP_003480117.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Natrialba magadii ATCC 43099]
 gi|289531204|gb|ADD05555.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Natrialba magadii ATCC 43099]
          Length = 508

 Score = 37.2 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 45  ASELHAKPKYSSIVI---DVNKNQMTGFKQDE-PRYPASLTKMMTLYIIFEYL 93
           A ++      ++I +   D+    +      E P  PAS  K++T    F+ L
Sbjct: 64  AGDVFDHLDQAAISVFARDIETGDVIADSGSERPVQPASTAKLLTTAAAFDEL 116


>gi|254390571|ref|ZP_05005786.1| D-stereospecific endopeptidase [Streptomyces clavuligerus ATCC
           27064]
 gi|294815653|ref|ZP_06774296.1| Alkaline d-peptidase [Streptomyces clavuligerus ATCC 27064]
 gi|326444002|ref|ZP_08218736.1| peptidase [Streptomyces clavuligerus ATCC 27064]
 gi|197704273|gb|EDY50085.1| D-stereospecific endopeptidase [Streptomyces clavuligerus ATCC
           27064]
 gi|294328252|gb|EFG09895.1| Alkaline d-peptidase [Streptomyces clavuligerus ATCC 27064]
          Length = 395

 Score = 37.2 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTK--MMTLYIIFEYLQS 95
           ++ +++ + +  A  K ++ V D    +    K +E     S+TK  + T+ +  E    
Sbjct: 65  AVGVVARSEKQGAVWKGTAGVADRTTGK--PRKANEHFRIGSITKTFVATVLLQLEA--E 120

Query: 96  KKLHLNTQIP 105
            +L L+  + 
Sbjct: 121 GRLSLDDTVE 130


>gi|332638017|ref|ZP_08416880.1| penicillin-binding protein, putative [Weissella cibaria KACC 11862]
          Length = 369

 Score = 37.2 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/81 (13%), Positives = 33/81 (40%), Gaps = 15/81 (18%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQM-------TGFKQDEPRY-------PASLTKM 83
           S++  ++  ++ A  +  ++++     ++          KQ             ASL K 
Sbjct: 57  SVLAKAIDQQVKATGRSGTLLV-AKAGKIILNQGYGLANKQTNQPATTQSLYGIASLQKN 115

Query: 84  MTLYIIFEYLQSKKLHLNTQI 104
           +T  ++ + + + K+ L  ++
Sbjct: 116 LTALLVMQQVATGKIKLTDKV 136


>gi|124263632|gb|ABM97538.1| beta-lactamase [Escherichia coli]
          Length = 291

 Score = 37.2 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 50/133 (37%), Gaps = 5/133 (3%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYK 177
             + T  +  +   A +  S N         + G  S   FA  + ++  ++    T   
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTETTLN 173

Query: 178 NASGLHDKNQITT 190
            A     ++  + 
Sbjct: 174 TAIPGDPRDTTSP 186


>gi|86747705|ref|YP_484201.1| beta-lactamase [Rhodopseudomonas palustris HaA2]
 gi|86570733|gb|ABD05290.1| Beta-lactamase [Rhodopseudomonas palustris HaA2]
          Length = 395

 Score = 37.2 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           D   + AS+TK +T     + ++  +L L+  I
Sbjct: 53  DSVFWIASMTKAITAAAAMQLVEQGRLSLDEPI 85


>gi|197215899|gb|ACH53187.1| CTX-M-32 beta-lactamase [Escherichia coli]
          Length = 282

 Score = 37.2 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|190572529|ref|YP_001970374.1| putative penicillin-binding protein 4 (pbp-4) [Stenotrophomonas
           maltophilia K279a]
 gi|190010451|emb|CAQ44059.1| putative penicillin-binding protein 4 (pbp-4) [Stenotrophomonas
           maltophilia K279a]
          Length = 517

 Score = 37.2 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 62  NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +  ++    +D     AS +K MT  ++   +Q  KL  +  +
Sbjct: 61  DGGRI---DEDTLFKIASNSKAMTAALLARLVQQGKLRWDDPV 100


>gi|109809899|gb|ABG46354.1| extended-spectrum beta-lactamase [Escherichia coli]
          Length = 277

 Score = 37.2 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|28883590|gb|AAO49767.1| beta-lactamase K1 [Klebsiella oxytoca]
          Length = 223

 Score = 37.2 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 55  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 112 EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 164


>gi|268564608|ref|XP_002647198.1| C. briggsae CBR-LACT-9 protein [Caenorhabditis briggsae]
 gi|187021874|emb|CAP38977.1| CBR-LACT-9 protein [Caenorhabditis briggsae AF16]
          Length = 418

 Score = 37.2 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
            D     AS++K +T  +  + +++ KL L+  I   +   ++ P+K +  E    T  Q
Sbjct: 89  ADSVMRIASISKPITATLAAQLVENGKLDLDADI---RKYLSEFPAKKFAGEDVTLTMRQ 145

Query: 131 G 131
            
Sbjct: 146 L 146


>gi|302537226|ref|ZP_07289568.1| beta-lactamase [Streptomyces sp. C]
 gi|302446121|gb|EFL17937.1| beta-lactamase [Streptomyces sp. C]
          Length = 387

 Score = 37.2 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 18/109 (16%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLN------------ 101
           S+ V DV   +       E R+ A S+TK  T  ++ +     K+ L+            
Sbjct: 71  SAGVADVRSGRAAVE---EARFRAGSVTKAFTAAVVLQLAAEGKVDLDRPVQDYLPGLLP 127

Query: 102 --TQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
               + V +     +  +        F  E      +      ++ A  
Sbjct: 128 GFEPVKVRQLLNYTSGLRSADGPGDTFADEYAHRFDLVDPHALIADAVA 176


>gi|295397523|ref|ZP_06807605.1| conserved hypothetical protein [Aerococcus viridans ATCC 11563]
 gi|294974253|gb|EFG49998.1| conserved hypothetical protein [Aerococcus viridans ATCC 11563]
          Length = 340

 Score = 37.2 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/94 (11%), Positives = 30/94 (31%), Gaps = 5/94 (5%)

Query: 59  IDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           I+    +     ++  +  AS  K+    I  + +    +  +T++  +     +    +
Sbjct: 112 INYQTGESYTVNENNFQTAASTIKLPLSVIYVDAIDEGTIDWDTEVTYTYADYEEGDGTI 171

Query: 119 YLKEKTY-----FTTEQGILALITRSANDVSTAF 147
                +      +T E  I   +  S N  +   
Sbjct: 172 TAAVASGTGQAAYTIEDLIANALMYSDNTATNML 205


>gi|239632162|ref|ZP_04675193.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301066847|ref|YP_003788870.1| beta-lactamase class C-like penicillin binding protein
           [Lactobacillus casei str. Zhang]
 gi|239526627|gb|EEQ65628.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300439254|gb|ADK19020.1| Beta-lactamase class C related penicillin binding protein
           [Lactobacillus casei str. Zhang]
          Length = 397

 Score = 37.2 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 13/73 (17%)

Query: 60  DVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           D    ++      E  Y   S+ K +T  ++   ++  K+HL+   P+SK          
Sbjct: 122 DAESGRL---NGPETLYQIGSIQKGLTAVLLMRLVEQGKVHLSD--PISKYLT------- 169

Query: 119 YLKEKTYFTTEQG 131
            ++     T    
Sbjct: 170 GIRTGKQVTLRMM 182


>gi|158312165|ref|YP_001504673.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Frankia sp. EAN1pec]
 gi|158107570|gb|ABW09767.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Frankia sp. EAN1pec]
          Length = 495

 Score = 37.2 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 55  SSIVIDVNKNQMTGFKQD-EPRYPASLTKM 83
           +++V+D    Q+    +  EP  PAS  K+
Sbjct: 79  ATLVVDALTGQVLFANRPTEPTAPASTVKI 108


>gi|109809903|gb|ABG46356.1| extended-spectrum beta-lactamase [Klebsiella pneumoniae]
          Length = 276

 Score = 37.2 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|461629|sp|P80298|BLAC_PROVU RecName: Full=Beta-lactamase; AltName: Full=Penicillinase
          Length = 271

 Score = 37.2 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 7/112 (6%)

Query: 62  NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQS--KKLHLNTQIPVSKTAATQNPSKLY 119
           + +Q+T  + +E    AS +K+M +  I +  +     L  N  I  S   A    ++ +
Sbjct: 30  DNSQITY-RGEERFAMASTSKVMAVAAILKESEKQAGLLDKNIIITKSDLVAYSPITEKH 88

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           L      +  Q   A +  S N       +++ G  K  +FA  +++   ++
Sbjct: 89  LATG--MSLAQLSAATLQYSDNTAMNKILDYLGGPSKVTQFARSINDVTYRL 138


>gi|300390458|gb|ADK11041.1| extended-spectrum beta-lactamase CTX-M-94 [Escherichia coli]
          Length = 291

 Score = 37.2 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 54/149 (36%), Gaps = 13/149 (8%)

Query: 33  KILFLSIIMISMASELH----AKPKYS------SIVIDVNKNQMTGFKQDEPRYPASLTK 82
            +L  S+ + + A+++     A  K S      +++   +  Q    + DE     S +K
Sbjct: 18  SLLLASVPLCAQANDVQQKLAALEKSSGGRLGVALINTADNTQTLY-RADERFAMCSTSK 76

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +M    + +  +++K  L+ ++ +  +                 T  +   A +  S N 
Sbjct: 77  VMAAAAVLKQSETQKGLLSQRVEIKPSDLINYNPIAEKHVNGTMTLGELSAAALQYSDNT 136

Query: 143 VSTAFGEFISGSEK--KFAILMSNKAKKI 169
                   + G +K   FA  + +   ++
Sbjct: 137 AMNKLIAHLGGPDKVTAFARTIGDDTFRL 165


>gi|291302184|ref|YP_003513462.1| beta-lactamase [Stackebrandtia nassauensis DSM 44728]
 gi|290571404|gb|ADD44369.1| beta-lactamase [Stackebrandtia nassauensis DSM 44728]
          Length = 366

 Score = 37.2 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 6/34 (17%), Positives = 16/34 (47%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           D+     S+TK  T  ++ + +   ++ L+  + 
Sbjct: 71  DQRVRIGSITKTYTATVVMQLVADGEIDLDQTVE 104


>gi|228925156|ref|ZP_04088266.1| hypothetical protein bthur0011_60280 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228834495|gb|EEM80024.1| hypothetical protein bthur0011_60280 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 678

 Score = 37.2 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 6/34 (17%), Positives = 15/34 (44%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +D     AS++K  T   + + +    + L+  +
Sbjct: 104 KDTVFQIASISKTFTALAVMQQVDKGNIKLDQDV 137


>gi|307710958|ref|ZP_07647381.1| penicillin-binding protein [Streptococcus mitis SK321]
 gi|307617198|gb|EFN96375.1| penicillin-binding protein [Streptococcus mitis SK321]
          Length = 823

 Score = 37.2 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 14/60 (23%)

Query: 51  KPKYSSIVIDVNKNQMTGF----------KQ---DEPRYPASLTKMMTLY-IIFEYLQSK 96
           +P+  ++++D     + GF               D  R PAS TK +  Y I  +     
Sbjct: 420 QPEVGNVLMDNKTGAVLGFVGGRNYQTNQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMG 479


>gi|307707770|ref|ZP_07644249.1| penicillin-binding protein 1B [Streptococcus mitis NCTC 12261]
 gi|307616268|gb|EFN95462.1| penicillin-binding protein 1B [Streptococcus mitis NCTC 12261]
          Length = 820

 Score = 37.2 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 14/60 (23%)

Query: 51  KPKYSSIVIDVNKNQMTGF----------KQ---DEPRYPASLTKMMTLY-IIFEYLQSK 96
           +P+  ++++D     + GF               D  R PAS TK +  Y I  +     
Sbjct: 420 QPEVGNVLMDNKTGAVLGFVGGRNYQTNQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMG 479


>gi|239630640|ref|ZP_04673671.1| beta-lactamase class A [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239526923|gb|EEQ65924.1| beta-lactamase class A [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 255

 Score = 37.2 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 77/229 (33%), Gaps = 38/229 (16%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++++  +   +    Q D+P   ASL K+     + E        L  Q+ + +   +  
Sbjct: 16  ALLV-ADTRHVLFGAQVDQPFPAASLIKLGIAAFVKEKAADDPSQLERQVTLPE---SVG 71

Query: 115 PSKL--YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK--AKKIG 170
            + +  ++     +     +  ++T S N  + A            A  ++      ++ 
Sbjct: 72  GAGILRFMSP-QAWRVRDLLTLMLTVSDNLATNALLTTYG--LPTIAAWLTRHYPGVQLR 128

Query: 171 --MQNTIYKNASGLHDKNQITTARDQ-AILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
             +  + +       D + + TA     +L  LL  +  +       +  R+      N 
Sbjct: 129 RPLMQSTF-------DGDNMITASAAWQLLRALLMSDGNEPAADICAQALRH----QQNR 177

Query: 228 NKLL--NKMHNIDG---IKTG---YTRNSGFNIVTSLRYKDDPIVAVVM 268
            KLL    M N  G    KTG   +  +           + + + AVV+
Sbjct: 178 TKLLLAPTMENFIGWLAGKTGELPHCEHDAACFAA----EGERLYAVVL 222


>gi|218439872|ref|YP_002378201.1| hypothetical protein PCC7424_2929 [Cyanothece sp. PCC 7424]
 gi|218172600|gb|ACK71333.1| hypothetical protein PCC7424_2929 [Cyanothece sp. PCC 7424]
          Length = 395

 Score = 37.2 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 28/101 (27%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKM--MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP 115
           +I+V   Q   ++QD  RYPAS+ K+  M     +  + S K                  
Sbjct: 128 LINVKTGQYGEYQQDRLRYPASVVKLFWMVAL--YGQIASGK--WQDP------------ 171

Query: 116 SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK 156
                        E     ++ +S N+ ++     ++ ++ 
Sbjct: 172 ---------QIFAEDLRK-MMIQSDNEAASRIVNQLTDTQS 202


>gi|260905444|ref|ZP_05913766.1| beta-lactamase [Brevibacterium linens BL2]
          Length = 299

 Score = 37.2 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 34/103 (33%), Gaps = 3/103 (2%)

Query: 48  LHAKPKYSSIVI-DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
           L A    ++IV+ D++  +      D+    AS+ K+   + +   +    L     I +
Sbjct: 15  LAAAGLRATIVVRDLDSGREVSTSADQAMPLASVVKVPIAFAVLNRISEGVLDGAQPITI 74

Query: 107 --SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
                           +       E  ++  ++ S N  + A 
Sbjct: 75  RPDHYGGDGPTGTSRFRHPAQIALEDLVMLSVSFSDNTATDAL 117


>gi|300789950|ref|YP_003770241.1| hypothetical protein AMED_8138 [Amycolatopsis mediterranei U32]
 gi|299799464|gb|ADJ49839.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
          Length = 274

 Score = 37.2 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 5/74 (6%)

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQI 188
              +  ++  S +  + A      G E +FA     +    GM +  + +    H     
Sbjct: 107 RDLMHRMLHSSDDAAAHALWTRFGG-EAEFA----RRFPAYGMIDMRFSDHHPHHWGWIR 161

Query: 189 TTARDQAILGILLR 202
           TTA D   L   + 
Sbjct: 162 TTADDLDRLIEYVL 175


>gi|240146934|ref|ZP_04745535.1| beta-lactamase [Roseburia intestinalis L1-82]
 gi|257200917|gb|EEU99201.1| beta-lactamase [Roseburia intestinalis L1-82]
          Length = 399

 Score = 37.2 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 41  MISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPA--------SLTKMMTLYIIFEY 92
           M   A       K+  I+   N+ ++     DE    A        S+TK+ T  ++ + 
Sbjct: 1   MAPGAVIALGTKKHQEILYLGNQQEVADNGADEIIPMAEDSIFDLSSVTKIFTCLMVLKL 60

Query: 93  LQSKKLHLNTQI 104
           ++  K+ L+ +I
Sbjct: 61  VELGKIELSDKI 72


>gi|191638794|ref|YP_001987960.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus casei BL23]
 gi|190713096|emb|CAQ67102.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus casei BL23]
 gi|327382837|gb|AEA54313.1| Beta-lactamase [Lactobacillus casei LC2W]
 gi|327386023|gb|AEA57497.1| Beta-lactamase [Lactobacillus casei BD-II]
          Length = 397

 Score = 37.2 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 13/73 (17%)

Query: 60  DVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           D    ++      E  Y   S+ K +T  ++   ++  K+HL+   P+SK          
Sbjct: 122 DAESGRL---NGPETLYQIGSIQKGLTAVLLMRLVEQGKVHLSD--PISKYLT------- 169

Query: 119 YLKEKTYFTTEQG 131
            ++     T    
Sbjct: 170 GIRTGKQVTLRMM 182


>gi|28883577|gb|AAO49710.1| beta-lactamase [Klebsiella oxytoca]
          Length = 173

 Score = 37.2 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 15  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLDI--NAADLVVWSPIT 71

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 72  EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 124


>gi|302206525|gb|ADL10867.1| Putative penicillin binding protein transpeptidase domain protein
           [Corynebacterium pseudotuberculosis C231]
 gi|308276767|gb|ADO26666.1| Putative penicillin-binding (cell division related) protein
           [Corynebacterium pseudotuberculosis I19]
          Length = 627

 Score = 37.2 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 49/147 (33%), Gaps = 38/147 (25%)

Query: 55  SSIVIDVNKNQMTGFKQ-------------------------DEPRYPASLTKMMTLYII 89
           S++V+D    ++                                P  P S+ K++T   +
Sbjct: 285 SAVVLDSETGKIMSMANSGTINPNGNIEKQLKNGKVFDNTAVSAPFEPGSVAKIITAAGV 344

Query: 90  FEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEK-TYFTTEQGILALITRSANDVSTAFG 148
            E     K   +  + V     +   S + +K+   + T       +  +S+N  +    
Sbjct: 345 IE---DGKTTPDEVLQV---PGSIKMSGVTVKDAWEHGTVGYTTTGVFGKSSNVGTLMLA 398

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTI 175
           + +   E++F    ++   K G+ +T 
Sbjct: 399 QRLG--EERF----NDLLHKFGVGHTT 419


>gi|256378186|ref|YP_003101846.1| hypothetical protein Amir_4145 [Actinosynnema mirum DSM 43827]
 gi|255922489|gb|ACU38000.1| conserved hypothetical protein [Actinosynnema mirum DSM 43827]
          Length = 475

 Score = 37.2 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 25/157 (15%)

Query: 60  DVNKNQ----MTGFKQDEPR-----YPASLTKMMTLYIIFEYLQSKKLHLN---TQIPVS 107
           DVN  Q    +   ++  P      YPAS+ K+M  + +       ++ L+      P  
Sbjct: 160 DVNGGQGTVDVLPGRESAPIDFSSPYPASVLKLMVGFGVLRLADEGRIDLDAVYDYQPTV 219

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167
             A         ++             +IT+S N+ + A  + +          ++ +  
Sbjct: 220 PNATCGGAFSAVIRSN--------FDQMITKSQNESTCALIKLLHDLGAW--DEVNAEFV 269

Query: 168 KIGMQN---TIYKNASGLHDKNQITTARDQAILGILL 201
           ++G+     T    A+G        ++ D A L +L+
Sbjct: 270 ELGLPTLMVTGTNPANGGRWIGSNMSSLDTAKLLLLI 306


>gi|301067794|ref|YP_003789817.1| beta-lactamase class A [Lactobacillus casei str. Zhang]
 gi|300440201|gb|ADK19967.1| Beta-lactamase class A [Lactobacillus casei str. Zhang]
          Length = 261

 Score = 37.2 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 77/229 (33%), Gaps = 38/229 (16%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++++  +   +    Q D+P   ASL K+     + E        L  Q+ + +   +  
Sbjct: 22  ALLV-ADTRHVLFGAQVDQPFPAASLIKLGIAAFVKEKAADDPSQLERQVTLPE---SVG 77

Query: 115 PSKL--YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK--AKKIG 170
            + +  ++     +     +  ++T S N  + A            A  ++      ++ 
Sbjct: 78  GAGILRFMSP-QAWRVRDLLTLMLTVSDNLATNALLTTYG--LPTIAAWLTRHYPGVQLR 134

Query: 171 --MQNTIYKNASGLHDKNQITTARDQ-AILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
             +  + +       D + + TA     +L  LL  +  +       +  R+      N 
Sbjct: 135 RPLMQSTF-------DGDNMITASAAWQLLRALLMSDGNEPAADICAQALRH----QQNR 183

Query: 228 NKLL--NKMHNIDG---IKTG---YTRNSGFNIVTSLRYKDDPIVAVVM 268
            KLL    M N  G    KTG   +  +           + + + AVV+
Sbjct: 184 TKLLLAPTMENFIGWLAGKTGELPHCEHDAACFAA----EGERLYAVVL 228


>gi|116495283|ref|YP_807017.1| Beta-lactamase class C related penicillin binding protein
           [Lactobacillus casei ATCC 334]
 gi|116105433|gb|ABJ70575.1| Beta-lactamase class C related penicillin binding protein
           [Lactobacillus casei ATCC 334]
          Length = 397

 Score = 37.2 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 13/73 (17%)

Query: 60  DVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           D    ++      E  Y   S+ K +T  ++   ++  K+HL+   P+SK          
Sbjct: 122 DAESGRL---NGPETLYQIGSIQKGLTAVLLMRLVEQGKVHLSD--PISKYLT------- 169

Query: 119 YLKEKTYFTTEQG 131
            ++     T    
Sbjct: 170 GIRTGKQVTLRMM 182


>gi|296123491|ref|YP_003631269.1| beta-lactamase [Planctomyces limnophilus DSM 3776]
 gi|296015831|gb|ADG69070.1| beta-lactamase [Planctomyces limnophilus DSM 3776]
          Length = 430

 Score = 37.2 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 11/87 (12%)

Query: 78  ASLTK-MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           ASLTK + T   + + +   KL L+  +        QN        K   T+      L+
Sbjct: 120 ASLTKPLATSLAVMKLVDHGKLELDQPVAKYWPEFKQNG-------KEAITSIDL---LV 169

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMS 163
            RS      A  ++  G E  +  + +
Sbjct: 170 HRSGLIADNALADYAQGPEVAWQKMAN 196


>gi|229100091|ref|ZP_04230998.1| D-stereospecific peptide hydrolase [Bacillus cereus Rock3-29]
 gi|228683340|gb|EEL37311.1| D-stereospecific peptide hydrolase [Bacillus cereus Rock3-29]
          Length = 333

 Score = 37.2 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           Y++ V D++  +    K D     AS+TK  T  ++ +     +L+L+  I 
Sbjct: 25  YAAGVADLSTKK--PMKTDFRFRIASVTKTFTATVVLQLAGENRLNLDDSIE 74


>gi|159125819|gb|EDP50935.1| transesterase (LovD), putative [Aspergillus fumigatus A1163]
          Length = 408

 Score = 37.2 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 6/103 (5%)

Query: 63  KNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN-TQIPVSKTAATQNPSKLYLK 121
             +    + D+  Y AS TK++T     + ++   L L      V+   A +     +  
Sbjct: 45  SGEKLPQQLDDVLYLASATKLVTAIAALQCVEDGLLSLTGDLSSVAPDLAAKQVLTGFSD 104

Query: 122 EKTYFTTEQGIL-----ALITRSANDVSTAFGEFISGSEKKFA 159
           +      E          L+T S+          I     KFA
Sbjct: 105 DGETPILEPPARPVTLEMLLTHSSGLCYHFLMPHIGQWRDKFA 147


>gi|70985486|ref|XP_748249.1| transesterase (LovD) [Aspergillus fumigatus Af293]
 gi|66845877|gb|EAL86211.1| transesterase (LovD), putative [Aspergillus fumigatus Af293]
          Length = 408

 Score = 37.2 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 6/103 (5%)

Query: 63  KNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN-TQIPVSKTAATQNPSKLYLK 121
             +    + D+  Y AS TK++T     + ++   L L      V+   A +     +  
Sbjct: 45  SGEKLPQQLDDVLYLASATKLVTAIAALQCVEDGLLSLTGDLSSVAPDLAAKQVLTGFSD 104

Query: 122 EKTYFTTEQGIL-----ALITRSANDVSTAFGEFISGSEKKFA 159
           +      E          L+T S+          I     KFA
Sbjct: 105 DGETPILEPPARPVTLEMLLTHSSGLCYHFLMPHIGQWRDKFA 147


>gi|227809518|gb|ACP40659.1| beta-lactamase [Staphylococcus aureus]
          Length = 216

 Score = 37.2 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 7/113 (6%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
            +D    +   F  D+    AS +K +   I+ E +   K  LN ++ ++K         
Sbjct: 24  ALDAKSGKEVKFNSDKRFAYASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPI 81

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           L        T ++ I A +T S N  +    + I G        +  + K++G
Sbjct: 82  LEKYVGKDITLKELIEASMTYSDNTANNKIIKEIGG-----IKKVKQRLKELG 129


>gi|314929327|gb|EFS93158.1| penicillin binding protein transpeptidase domain protein
           [Propionibacterium acnes HL044PA1]
 gi|328906991|gb|EGG26757.1| penicillin-binding protein, transpeptidase domain protein
           [Propionibacterium sp. P08]
          Length = 595

 Score = 37.2 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 44/131 (33%), Gaps = 30/131 (22%)

Query: 49  HAKPKYSSIVI-DVNKNQMTG--------------FKQDEPR--------YPASLTKMMT 85
           +AK K   +V+ DV   ++                 K+++ R         P S+ K++T
Sbjct: 262 NAKAKSGEVVMMDVTNGEVLAMASMPTFDSNKPGKAKENQTRNRVIQDAYEPGSVQKVLT 321

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI-LALITRSANDVS 144
           +      +    +  ++ + V    ++       + +     TE      ++  S+N  +
Sbjct: 322 M---AALIDRGTITPDSHVVVPPALSSGGG---KITDAEPHGTEYLTARGVLVHSSNIGA 375

Query: 145 TAFGEFISGSE 155
                 +  S 
Sbjct: 376 ALVARKMDKST 386


>gi|326440153|ref|ZP_08214887.1| hypothetical protein SclaA2_03759 [Streptomyces clavuligerus ATCC
           27064]
          Length = 201

 Score = 37.2 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 18/101 (17%)

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILA--LITRSANDVSTAFGEFISGSEKKFAIL 161
           + VS  AA        L++       +   A  +I  S N+ ++     I G E      
Sbjct: 21  VKVSLLAAR-------LQQGRPLDARERERARLMIVHSDNEAASELYAAIGGPEG----- 68

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
           +     ++G+  T    A GL      TTARDQ  L   + 
Sbjct: 69  LDAWHARLGLTATRAHRAWGLT----RTTARDQLALMTAVL 105


>gi|288935512|ref|YP_003439571.1| beta-lactamase [Klebsiella variicola At-22]
 gi|288890221|gb|ADC58539.1| beta-lactamase [Klebsiella variicola At-22]
          Length = 371

 Score = 37.2 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 16/28 (57%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            ASL+K MT  ++ E ++  ++   T +
Sbjct: 86  IASLSKTMTASLLLEAIRRGEVTAQTPV 113


>gi|83312832|ref|YP_423096.1| Beta-lactamase class C and other penicillin binding protein
           [Magnetospirillum magneticum AMB-1]
 gi|82947673|dbj|BAE52537.1| Beta-lactamase class C and other penicillin binding protein
           [Magnetospirillum magneticum AMB-1]
          Length = 385

 Score = 37.2 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 6/34 (17%), Positives = 17/34 (50%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +    + AS+ K++T     + ++  +L L+  +
Sbjct: 85  EATRFHIASVGKILTAIATLQLVEEGRLSLDAPV 118


>gi|51893159|ref|YP_075850.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51856848|dbj|BAD41006.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 402

 Score = 37.2 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 9/61 (14%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
            ++  +  S++K+ T  ++    +  +L L    PVS+                  T  Q
Sbjct: 102 AEDRFHIGSVSKLYTAALVLRLAEEGRLSLED--PVSRFVPDVP-------NGDRITVRQ 152

Query: 131 G 131
            
Sbjct: 153 L 153


>gi|54307804|ref|YP_128824.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Photobacterium
           profundum SS9]
 gi|46912227|emb|CAG19022.1| hypothetical D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Photobacterium profundum SS9]
          Length = 472

 Score = 37.2 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 57  IVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           +++D   NQ+   ++ E    PAS  K++T  +  +         NT + VS  
Sbjct: 43  MIVDPATNQVLYSQRTEQLQAPASTQKVITA-LAAKLYLDDNYRFNTDLEVSTN 95


>gi|315022278|gb|EFT35306.1| D-alanyl-D-alanine carboxypeptidase [Riemerella anatipestifer
          RA-YM]
          Length = 473

 Score = 37.2 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 57 IVIDVNKNQMTG-FKQDEPRYPASLTKMMT 85
          +V D    Q+   + +  P  PAS TK++T
Sbjct: 67 VVYDPKSKQIISSYNEATPLVPASTTKLLT 96


>gi|290509550|ref|ZP_06548921.1| beta-lactamase [Klebsiella sp. 1_1_55]
 gi|289778944|gb|EFD86941.1| beta-lactamase [Klebsiella sp. 1_1_55]
          Length = 349

 Score = 37.2 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 16/28 (57%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            ASL+K MT  ++ E ++  ++   T +
Sbjct: 64  IASLSKTMTASLLLEAIRRGEVTAQTPV 91


>gi|257070132|ref|YP_003156387.1| penicillin-binding protein, beta-lactamase class C [Brachybacterium
           faecium DSM 4810]
 gi|256560950|gb|ACU86797.1| penicillin-binding protein, beta-lactamase class C [Brachybacterium
           faecium DSM 4810]
          Length = 550

 Score = 37.2 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 15/32 (46%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
                AS +KM+T + I    +  +L L+  +
Sbjct: 75  HRLRIASHSKMLTAFTIMRLKEQGRLRLDDTV 106


>gi|190364829|gb|ACE77058.1| extended-spectrum beta-lactamase PER-4 [Proteus vulgaris]
          Length = 308

 Score = 37.2 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 76/229 (33%), Gaps = 27/229 (11%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK--LYLKEKTYFT--T 128
           E     S+ K+    ++   +   KL LN  + V++    QN     +   +   F+   
Sbjct: 65  EKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFSVPV 124

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK---NASGLHDK 185
           +Q +   ++ + N       E + G        + +  + +G++ T            D+
Sbjct: 125 QQLLQYSVSHTDNVACDLLFELVGGP-----AALHDYIQSMGIKETAVVANEAQMHADDQ 179

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRK---FRYRNRIITNHNKLLNKMH------- 235
            Q             + K F Q  +     +   +++     T   +L   +        
Sbjct: 180 VQYQNWTSM-KGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAH 238

Query: 236 --NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ-ERDQKAL 281
                GIK G T  +  ++   L     P++  V    +++  R  +A+
Sbjct: 239 KTGTSGIKAGKT-AATNDLGIILLPDGRPLLVAVFVKDSAESSRTNEAI 286


>gi|9739248|gb|AAF93177.1| cefotaxime-hydrolyzing beta-lactamase [Klebsiella pneumoniae]
          Length = 282

 Score = 37.2 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSPAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|153806665|ref|ZP_01959333.1| hypothetical protein BACCAC_00935 [Bacteroides caccae ATCC 43185]
 gi|149131342|gb|EDM22548.1| hypothetical protein BACCAC_00935 [Bacteroides caccae ATCC 43185]
          Length = 365

 Score = 37.2 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 6   IQSSAKKTFLTYPYGSIYIQR-----NIQLMGKILFLSIIMISMASELHAKPKYSSIVID 60
           + S   +TFL    G +++        I L+  ++    ++  +A  L A   +++I + 
Sbjct: 211 VNSGKPRTFLQK-IGDVFVAIAAVFFKIFLVALVIICCPVLFVLAIVLVAL-VFAAIAVA 268

Query: 61  VNKNQMTGF--KQDEPRYPASLTKMMTLY 87
           V+   +        +    AS+T MMTL 
Sbjct: 269 VSGGALLYELLPAIDWTPIASVTPMMTLL 297


>gi|325336594|gb|ADZ12868.1| Peptidase S13, D-Ala-D-Ala carboxypeptidase C [Riemerella
           anatipestifer RA-GD]
          Length = 484

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 57  IVIDVNKNQMTG-FKQDEPRYPASLTKMMT 85
           +V D    Q+   + +  P  PAS TK++T
Sbjct: 78  VVYDPKSKQIISSYNEATPLVPASTTKLLT 107


>gi|148657765|ref|YP_001277970.1| beta-lactamase [Roseiflexus sp. RS-1]
 gi|148569875|gb|ABQ92020.1| beta-lactamase [Roseiflexus sp. RS-1]
          Length = 357

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           ++ V D     M   + D P + AS+TKM T  II +  + ++L L    PVS  
Sbjct: 40  AAGVADPGSGAMM--QPDTPYFIASITKMYTAAIIMQLYEQQRLDL--AAPVSDY 90


>gi|30140337|emb|CAD89606.1| beta-lactamase CTX-M-32 [Escherichia coli]
 gi|119926023|emb|CAM06581.1| extended-spectrum beta-lactamase CTX-M-32 [Proteus mirabilis]
          Length = 291

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|327440901|dbj|BAK17266.1| D-alanyl-D-alanine carboxypeptidase [Solibacillus silvestris
          StLB046]
          Length = 472

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 8/68 (11%)

Query: 24 IQRNIQLMGKI-LFLSIIMISMASELHAKPKY-----SSIVI-DVNKNQMTGFKQ-DEPR 75
          +++  QL+  + LF S+ + S AS   A   +     +++ I D    ++   +  D+  
Sbjct: 1  MKKIFQLVILLALFFSLPIQSFASINGAVTTHLGKSNAAVTIRDAESGKIVYSQNGDKLM 60

Query: 76 YPASLTKM 83
           PAS  K+
Sbjct: 61 RPASNMKL 68


>gi|281335996|gb|ADA62555.1| CTX-M-32-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|124365352|gb|ABN09669.1| beta-lactamase CTX-M-61 [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 291

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|24373941|ref|NP_717984.1| penicillin-binding protein 4 [Shewanella oneidensis MR-1]
 gi|24348376|gb|AAN55428.1|AE015680_3 penicillin-binding protein 4 [Shewanella oneidensis MR-1]
          Length = 507

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 13/79 (16%)

Query: 28 IQLMGKILFLSIIMISMASELHA---------KPKYSSIVI---DVNKNQMTGFKQDEPR 75
          + ++   LF S +  + A   H           P +S I +   D++ ++    +Q +  
Sbjct: 18 LTVVATALFPSNVWAAAADIKHTTLDQQMSDIAPSHSQIALLAHDMSNDKQLYSQQADTL 77

Query: 76 Y-PASLTKMMTLYIIFEYL 93
          + PAS  K++T       L
Sbjct: 78 FIPASTQKVLTAVTALAAL 96


>gi|284036781|ref|YP_003386711.1| beta-lactamase [Spirosoma linguale DSM 74]
 gi|283816074|gb|ADB37912.1| beta-lactamase [Spirosoma linguale DSM 74]
          Length = 517

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 76  YPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
             AS TK MT   +   +   KL+ +  +
Sbjct: 85  AMASTTKAMTAACLGMMVDEGKLNWDDPV 113


>gi|28883598|gb|AAO49771.1| beta-lactamase K1 [Klebsiella oxytoca]
          Length = 178

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 40  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 96

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 97  EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 149


>gi|28883559|gb|AAO49706.1| beta-lactamase [Klebsiella oxytoca]
          Length = 179

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 30  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 86

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 87  EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 139


>gi|331265448|ref|YP_004325078.1| hypothetical protein SOR_0010 [Streptococcus oralis Uo5]
 gi|326682120|emb|CBY99736.1| conserved hypothetical protein [Streptococcus oralis Uo5]
          Length = 422

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 11/108 (10%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMT-LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119
           ++  +  G  +D   Y AS+ K+ T LY   + +      L++         +   S   
Sbjct: 207 LSTGKDAGVNEDNKLYAASILKL-TYLYYAQDKINQGDYTLDSSFKYIPEVNSFPGSYKP 265

Query: 120 LKEKTY--------FTTEQGILALITRSANDVSTAFGEFISG-SEKKF 158
               +         ++ +Q I+ +   S N      G +++  S+  F
Sbjct: 266 EGSGSLPKKEDSKDYSLQQLIIKVTKESDNVAHNILGYYVTNQSDGAF 313


>gi|229588484|ref|YP_002870603.1| putative peptidoglycan glycosyltransferase cell division-like
           protein [Pseudomonas fluorescens SBW25]
 gi|229360350|emb|CAY47207.1| putative peptidoglycan glycosyltransferase, cell division-realted
           protein [Pseudomonas fluorescens SBW25]
          Length = 581

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 45/158 (28%), Gaps = 41/158 (25%)

Query: 53  KYSSIVIDVNKNQMTG------FKQDEPR----------------YPASLTKM--MTLYI 88
             S +++DV   ++        +  +  R                 P S  K   M+   
Sbjct: 244 AGSLVIMDVKTGEILAMVNQPTYNPNNRRNLQPAMMRNRAMIDVFEPGSTMKAISMSA-- 301

Query: 89  IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
               L++ +   + ++ V           +    +T          ++  S+N   +   
Sbjct: 302 ---ALETGRWKPSDKVEVYPGTLQLGKYTIRDVSRTEGPVLDL-TGILINSSNVGMSKVA 357

Query: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
             I G          + A+KIG+        +GL    
Sbjct: 358 FDIGGETIY------HLAQKIGL-----GQPTGLDFPG 384


>gi|126652131|ref|ZP_01724313.1| Beta-lactamase class A [Bacillus sp. B14905]
 gi|126591039|gb|EAZ85150.1| Beta-lactamase class A [Bacillus sp. B14905]
          Length = 301

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 15/122 (12%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKM---MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           +   +     ++     AS+ K+    TLY     +Q  K+ L   I + +     N S 
Sbjct: 28  LESGETAAINENRLFQAASVFKIPILATLY---RDVQMGKVELKEHIRLEEEDL-VNGSG 83

Query: 118 LY--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI 175
           ++  L      T +     +I  S N  +      +          ++   K+IG+ NT 
Sbjct: 84  IFKELIPGIDVTIKNLATMMIIVSDNVGTDKLLSILGK------ENVNQYMKEIGLSNTY 137

Query: 176 YK 177
            +
Sbjct: 138 IR 139


>gi|313205965|ref|YP_004045142.1| D-alanyl-D-alaninecarboxypeptidase/
          D-alanyl-D-alanine-endopeptidase [Riemerella
          anatipestifer DSM 15868]
 gi|312445281|gb|ADQ81636.1| D-alanyl-D-alaninecarboxypeptidase/
          D-alanyl-D-alanine-endopeptidase [Riemerella
          anatipestifer DSM 15868]
          Length = 473

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 57 IVIDVNKNQMTGF-KQDEPRYPASLTKMMT 85
          +V D    Q+     +  P  PAS TK++T
Sbjct: 67 VVYDPKSKQIISSCNEATPLVPASTTKLLT 96


>gi|295691003|ref|YP_003594696.1| beta-lactamase [Caulobacter segnis ATCC 21756]
 gi|295432906|gb|ADG12078.1| beta-lactamase [Caulobacter segnis ATCC 21756]
          Length = 540

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 14/29 (48%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
            AS TK MT  +I   ++  +L  +  + 
Sbjct: 89  IASNTKAMTAALIGMLVEEGRLAWDDPVT 117


>gi|329947845|ref|ZP_08294777.1| beta-lactamase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328523469|gb|EGF50567.1| beta-lactamase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 654

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110
           D     AS++K+ T   + + ++  +L L+  + +S  A
Sbjct: 105 DTLFRIASVSKLATSIAVMQLVERGELDLD--VDISAYA 141


>gi|27380652|ref|NP_772181.1| hypothetical protein blr5541 [Bradyrhizobium japonicum USDA 110]
 gi|27353817|dbj|BAC50806.1| blr5541 [Bradyrhizobium japonicum USDA 110]
          Length = 422

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 43/153 (28%), Gaps = 39/153 (25%)

Query: 24  IQRNIQLMGKILFLSIIMISMASELHAKPKY-------------------SSIVI----- 59
           ++R   L+G  L    +  S A+++ A                        ++++     
Sbjct: 1   MKRREFLVGAALLAGTMARSRAADIPAPAPEGLDRITAFFDSEVTSGRLPGAVIMVQQHG 60

Query: 60  -----------DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
                      DV          D      S+TK +T       +   KL L    P SK
Sbjct: 61  KPVYLKTFGVRDVRTG--LAMTPDTIFAIHSMTKPITCLGAMMLIDEGKLALTD--PASK 116

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
                  +K+ L+        +  L    R  N
Sbjct: 117 YVPLFAGTKVGLEVTEPDGKLELDLVPPVRPVN 149


>gi|212533381|ref|XP_002146847.1| beta-lactamase, putative [Penicillium marneffei ATCC 18224]
 gi|210072211|gb|EEA26300.1| beta-lactamase, putative [Penicillium marneffei ATCC 18224]
          Length = 442

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           D     ASLTK+ T       L + ++ LNT +
Sbjct: 119 DTVYDMASLTKLFTTVAALRELDAGRIALNTTV 151


>gi|28883563|gb|AAO49708.1| beta-lactamase [Klebsiella oxytoca]
          Length = 170

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 21  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 77

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 78  EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 130


>gi|291441904|ref|ZP_06581294.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces ghanaensis
           ATCC 14672]
 gi|291344799|gb|EFE71755.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces ghanaensis
           ATCC 14672]
          Length = 397

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 47/139 (33%), Gaps = 9/139 (6%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKK 97
           ++ +++ ++  H     ++ V D    +       +    AS TK     ++ + +   +
Sbjct: 58  TVGVVARSAGPHGSRYATAGVADQRTGR--AVHPRDKFRIASATKTFVSTVVLQLVGEGR 115

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           L L+  +     A           + +  T  Q +    +   N  +       + + + 
Sbjct: 116 LSLDDTV----EALLPGVVTGNGNDGSRITVRQLLNHT-SGLFNYTADFPAFTDAAAFQA 170

Query: 158 --FAILMSNKAKKIGMQNT 174
             F     ++   I M++T
Sbjct: 171 GRFDTWTDSRLVAIAMRHT 189


>gi|260880901|ref|ZP_05893256.1| beta-lactamase [Vibrio parahaemolyticus AN-5034]
 gi|308125652|ref|ZP_05776458.2| beta-lactamase [Vibrio parahaemolyticus K5030]
 gi|308091584|gb|EFO41279.1| beta-lactamase [Vibrio parahaemolyticus AN-5034]
 gi|308114457|gb|EFO51997.1| beta-lactamase [Vibrio parahaemolyticus K5030]
          Length = 245

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 2/114 (1%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           V D   ++   ++ DE     S  K +    +   + S KL+ N    + +         
Sbjct: 3   VWDTQTDKRWDYRGDERFPLMSTFKTLACATMLSDMDSGKLNKNATAKIDERNIVVWSPV 62

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           +          E    A +  S N  +      I G +   +F   + +KA ++
Sbjct: 63  MDKLAGQSTRIEHACEAAMLMSDNTAANLVLNEIGGPKAVTQFLRSIGDKATRL 116


>gi|28900332|ref|NP_799987.1| beta-lactamase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260896043|ref|ZP_05904539.1| beta-lactamase [Vibrio parahaemolyticus Peru-466]
 gi|28808643|dbj|BAC61820.1| beta-lactamase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087055|gb|EFO36750.1| beta-lactamase [Vibrio parahaemolyticus Peru-466]
          Length = 283

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 2/114 (1%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           V D   ++   ++ DE     S  K +    +   + S KL+ N    + +         
Sbjct: 41  VWDTQTDKRWDYRGDERFPLMSTFKTLACATMLSDMDSGKLNKNATAKIDERNIVVWSPV 100

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           +          E    A +  S N  +      I G +   +F   + +KA ++
Sbjct: 101 MDKLAGQSTRIEHACEAAMLMSDNTAANLVLNEIGGPKAVTQFLRSIGDKATRL 154


>gi|298206545|ref|YP_003717483.1| beta-lactamase [Escherichia coli]
 gi|3915633|sp|P28585|BLC1_ECOLX RecName: Full=Beta-lactamase CTX-M-1; AltName: Full=Beta-lactamase
           MEN-1; AltName: Full=Cefotaximase 1; Flags: Precursor
 gi|1524021|emb|CAA63262.1| ES-beta-lactamase [Escherichia coli]
 gi|16304813|emb|CAC95168.1| CTX-M-1 beta-lactamase [Escherichia coli]
 gi|16304820|emb|CAC95173.1| CTX-M-1 beta-lactamase [Proteus mirabilis]
 gi|70671432|emb|CAJ01342.1| beta-lactamase CTX-M-1 [Escherichia coli]
 gi|116643127|gb|ABK06383.1| beta-lactamase bla-CTX-M-1 [Escherichia coli]
 gi|192758060|gb|ACF04955.1| beta-lactamase CTX-M-1 [Escherichia coli]
 gi|209483439|gb|ACI47259.1| extended-spectrum class A beta-lactamase CTX-M-1 [Escherichia coli]
 gi|209483443|gb|ACI47262.1| extended-spectrum class A beta-lactamase CTX-M-1 [Klebsiella
           pneumoniae]
 gi|256956384|gb|ACV32728.1| beta-lactamase CTX-M1 [Escherichia coli]
 gi|256956396|gb|ACV32738.1| beta-lactamase CTX-M1 [Escherichia coli]
 gi|256956408|gb|ACV32748.1| ES-beta-lactamase [Escherichia coli]
 gi|256956421|gb|ACV32758.1| beta-lactamase CTX-M1 [Escherichia coli]
 gi|296537950|gb|ADH29970.1| beta-lactamase [Escherichia coli O25b:H4 str. EC958]
 gi|313585894|gb|ADR71056.1| beta lactamase CTX-M-1 [Escherichia coli]
 gi|328802646|emb|CBL58176.1| extended spectrum beta-lactamase [Escherichia coli]
 gi|328880016|emb|CBL58188.1| extended spectrum beta-lactamase [Escherichia coli]
 gi|1588603|prf||2209219A cefotaximase CTX-M-1
          Length = 291

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|293364671|ref|ZP_06611392.1| penicillin-binding protein 1B [Streptococcus oralis ATCC 35037]
 gi|307702927|ref|ZP_07639875.1| penicillin-binding protein [Streptococcus oralis ATCC 35037]
 gi|291316929|gb|EFE57361.1| penicillin-binding protein 1B [Streptococcus oralis ATCC 35037]
 gi|307623607|gb|EFO02596.1| penicillin-binding protein [Streptococcus oralis ATCC 35037]
          Length = 833

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 14/60 (23%)

Query: 51  KPKYSSIVIDVNKNQMT-------GFKQ------DEPRYPASLTKMMTLY-IIFEYLQSK 96
           +P+  ++++D     +          K       D  R PAS TK +  Y I  +     
Sbjct: 428 QPEVGNVLMDNQTGAILGFVGGRNYQKNQNNHAIDTKRSPASTTKPILAYSIAIDQGLMG 487


>gi|226432219|gb|ACO55655.1| TER-1 beta-lactamase [Raoultella terrigena]
          Length = 284

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 88/265 (33%), Gaps = 45/265 (16%)

Query: 45  ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMM-TLYI-----IFEYLQSKKL 98
           A+E   + +     +D+   ++    + + R+P     MM T  +     +   + + + 
Sbjct: 31  AAERQLEARVGYAELDLASGRLLASYRPDERFP-----MMSTFKVPLCAAVLARVDAGEE 85

Query: 99  HLNTQI-----------PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
            L+ ++           PV++          +L +    T  +   A IT S N  +   
Sbjct: 86  KLDRRVRYRQQDLVEYSPVTEK---------HLADG--MTVAELCAAAITLSDNTAANLL 134

Query: 148 GEFISGSE--KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
              + G++    F     ++  ++    T    A     ++  T       L  LL  + 
Sbjct: 135 LASVGGTQGLTAFLRRSGDQTSRLDRWETELNEALPGDARDTTTPQAMAKTLHNLLTGSV 194

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLNKM---HNIDGIKTGYTRNSGFNIVTSLRYKDDP 262
                   +R +   +++      LL            KTG        I+ +L     P
Sbjct: 195 LSAASRQQLRSWMVDDKVAG---PLLRSTLPHGWFIADKTGAGNRGSRGIIAALGPDGQP 251

Query: 263 IVAVVM---GMP-TSQERDQKALEL 283
              V++   G   +  ER+++  E+
Sbjct: 252 ARIVIIYLTGTEASMDERNRQIAEI 276


>gi|86160920|gb|ABC86901.1| beta-lactamase [Photobacterium leiognathi]
          Length = 294

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 28/166 (16%)

Query: 24  IQRNIQLMGKILFLSIIMISMAS------------ELHAKPKYSSIVIDVNKNQMTGFKQ 71
           + R I +      L+   +S+AS            +L AK   S  V++ N         
Sbjct: 9   VSRVITMAMGTASLTFSAMSVASTNIDSAIKHAEQQLGAKVGVS--VLNAN-GDSLYGYN 65

Query: 72  DEPRYPASLTKMMTLYIIF---EYLQSKKLH---LNTQIPVSKTAATQNPSKLYLKEKTY 125
            E R+P     +M+ +      + L   ++    ++   PV+  A          K  T 
Sbjct: 66  SEQRFP-----LMSTFKTLACAKLLHDNQITKGMMDKTYPVTADAILDYAPVFKDKIGTE 120

Query: 126 FTTEQGILALITRSANDVSTAFGEFISGSE--KKFAILMSNKAKKI 169
            + +    A +T S N  +      I G+E   KF I  S+   ++
Sbjct: 121 VSLKDACFATMTTSDNSAANFVLAHIGGAEGVTKFLIDNSDNVTRL 166


>gi|67973165|gb|AAY84115.1| beta-lactamase [Staphylococcus aureus]
          Length = 268

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 21/154 (13%)

Query: 31  MGKILFLSIIMISMAS----ELHAK----------PKYSSIVIDVNKNQMTGFKQDEPRY 76
           M K++FL +I + +++      HAK                 +D    +   F  D+   
Sbjct: 1   MKKLIFLIVIALVLSACNSNSSHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS +K +   I+ E +   K  LN ++ ++K         L        T +  I A +
Sbjct: 61  YASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASM 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           T S N  +    + I G        +  + K++G
Sbjct: 119 TYSDNTANNKIIKEIGG-----IKKVKQRLKELG 147


>gi|281335966|gb|ADA62540.1| CTX-M-57-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|260662684|ref|ZP_05863578.1| penicillin-binding protein transpeptidase [Lactobacillus fermentum
           28-3-CHN]
 gi|260552765|gb|EEX25764.1| penicillin-binding protein transpeptidase [Lactobacillus fermentum
           28-3-CHN]
          Length = 270

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 43/127 (33%), Gaps = 39/127 (30%)

Query: 73  EPRYPASLTKM--MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
              + AS  K+  MT  ++          LN                         T  +
Sbjct: 75  HQFHTASTVKVGVMTALLL-----DNNGQLND------------------------TENE 105

Query: 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITT 190
              A+I  S ND ++   E   GS++    +      +IGM +T  ++  GL      TT
Sbjct: 106 LAQAMIENSDNDATSTLFENYIGSKEGLQKVY----DEIGMTHTKVRSEWGLT----TTT 157

Query: 191 ARDQAIL 197
           A DQ  L
Sbjct: 158 AADQVKL 164


>gi|119483696|ref|XP_001261751.1| beta-lactamase family protein [Neosartorya fischeri NRRL 181]
 gi|119409907|gb|EAW19854.1| beta-lactamase family protein [Neosartorya fischeri NRRL 181]
          Length = 603

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            AS+TK+ T+  I +   +  L L   +
Sbjct: 105 IASITKVFTVLGILQQHAAGNLSLEDTV 132


>gi|239933531|ref|ZP_04690484.1| alkaline D-peptidase [Streptomyces ghanaensis ATCC 14672]
          Length = 380

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 47/139 (33%), Gaps = 9/139 (6%)

Query: 38  SIIMISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKK 97
           ++ +++ ++  H     ++ V D    +       +    AS TK     ++ + +   +
Sbjct: 41  TVGVVARSAGPHGSRYATAGVADQRTGR--AVHPRDKFRIASATKTFVSTVVLQLVGEGR 98

Query: 98  LHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
           L L+  +     A           + +  T  Q +    +   N  +       + + + 
Sbjct: 99  LSLDDTV----EALLPGVVTGNGNDGSRITVRQLLNHT-SGLFNYTADFPAFTDAAAFQA 153

Query: 158 --FAILMSNKAKKIGMQNT 174
             F     ++   I M++T
Sbjct: 154 GRFDTWTDSRLVAIAMRHT 172


>gi|229018329|ref|ZP_04175199.1| D-stereospecific peptide hydrolase [Bacillus cereus AH1273]
 gi|229024557|ref|ZP_04181002.1| D-stereospecific peptide hydrolase [Bacillus cereus AH1272]
 gi|228736622|gb|EEL87172.1| D-stereospecific peptide hydrolase [Bacillus cereus AH1272]
 gi|228742918|gb|EEL93048.1| D-stereospecific peptide hydrolase [Bacillus cereus AH1273]
          Length = 388

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 6/79 (7%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
            Y++ V D++  +    K D     AS+TK  T   + + +   ++ L+  I        
Sbjct: 78  SYNAGVADLSTKK--SMKSDYRFRIASVTKTFTATTVLQLVGENRVQLDDPI----EKWL 131

Query: 113 QNPSKLYLKEKTYFTTEQG 131
               K    +    T  Q 
Sbjct: 132 PGLVKGNGYDGNQITIRQL 150


>gi|226229091|ref|YP_002763197.1| hypothetical protein GAU_3685 [Gemmatimonas aurantiaca T-27]
 gi|226092282|dbj|BAH40727.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 540

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
           D P   AS+TK +T  +  + ++S +L L+
Sbjct: 106 DTPLRIASVTKALTGVVAMQMVESGRLILD 135


>gi|313837463|gb|EFS75177.1| penicillin binding protein transpeptidase domain protein
           [Propionibacterium acnes HL037PA2]
 gi|314971670|gb|EFT15768.1| penicillin binding protein transpeptidase domain protein
           [Propionibacterium acnes HL037PA3]
          Length = 595

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 44/131 (33%), Gaps = 30/131 (22%)

Query: 49  HAKPKYSSIVI-DVNKNQMTG--------------FKQDEPR--------YPASLTKMMT 85
           +AK K   +V+ DV   ++                 K+++ R         P S+ K++T
Sbjct: 262 NAKAKSGEVVMMDVTNGEVLAMASMPTFDSNKPGKAKENQTRNRVIQDAYEPGSVQKVLT 321

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI-LALITRSANDVS 144
           +      +    +  ++ + V    ++       + +     TE      ++  S+N  +
Sbjct: 322 M---AALIDRGTITPDSHVVVPPALSSGGG---KITDAEPHGTEYLTARGVLVHSSNIGA 375

Query: 145 TAFGEFISGSE 155
                 +  S 
Sbjct: 376 ALVARKMDKST 386


>gi|281336006|gb|ADA62560.1| CTX-M-1 group beta-lactamase [synthetic construct]
          Length = 291

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|256379347|ref|YP_003103007.1| hypothetical protein Amir_5341 [Actinosynnema mirum DSM 43827]
 gi|255923650|gb|ACU39161.1| hypothetical protein Amir_5341 [Actinosynnema mirum DSM 43827]
          Length = 350

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 17/143 (11%)

Query: 69  FKQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127
               +    A S+ K+     + + +    L L+ ++ V++    Q+   ++  +  Y +
Sbjct: 89  EDNADRVVEAYSVNKIAVAVAVLDKVDRGLLTLDQRVDVTEAIVIQDTDGIFGLDGAYPS 148

Query: 128 TEQGILA---LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
           +         L+T S N      G  +       A+ ++   +  G   T         +
Sbjct: 149 SVTLGHVLATLLTVSDNTAVRLCGLVVP------ALELNEILRSKGFTATQVVPV---AN 199

Query: 185 KN----QITTARDQAILGILLRK 203
            N      TT R+   L   L +
Sbjct: 200 PNRFFLGTTTPRETFTLLQKLVR 222


>gi|281335842|gb|ADA62489.1| CTX-M-1 group beta-lactamase [synthetic construct]
          Length = 291

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|254787003|ref|YP_003074432.1| peptidoglycan synthetase FtsI [Teredinibacter turnerae T7901]
 gi|237686982|gb|ACR14246.1| peptidoglycan synthetase FtsI [Teredinibacter turnerae T7901]
          Length = 554

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 25/89 (28%)

Query: 42  ISMASELHAKPKYSSIVIDVNKNQMTGF--------------KQDEPR--------YPAS 79
           ++ A +       S +V+DV   ++                 K  + R         P S
Sbjct: 221 LASAVKKQGAKSGSVVVMDVKTGEVLAMANQPAYNPNDRSSIKPAQLRNRALTDVFEPGS 280

Query: 80  LTKMMTLYIIFEYLQSKKLHLNTQIPVSK 108
             K +T+    E   S K HLN  I  S 
Sbjct: 281 TVKPLTMMAALE---SGKYHLNDTINTSP 306


>gi|239929773|ref|ZP_04686726.1| hypothetical protein SghaA1_16220 [Streptomyces ghanaensis ATCC
           14672]
 gi|291438099|ref|ZP_06577489.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
           14672]
 gi|291340994|gb|EFE67950.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
           14672]
          Length = 362

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 68/179 (37%), Gaps = 34/179 (18%)

Query: 109 TAATQNPSKLYLKEKTYFTTEQGILA-----LITRSANDVSTAFGEFIS---GSEKKFA- 159
            A+   PSK   + +T  T     LA     ++T S ND++ A     +   G    FA 
Sbjct: 165 KASPPGPSKATTRARTLATVSSPPLAALVERMLTESDNDLAEALARHTALASGRRADFAG 224

Query: 160 --ILMSNKAKKIGM--QNTIYKNASGLHDKNQITTARDQAILGILLRK----NFPQYYK- 210
               ++ + KK+G+  +  ++K+ SGL   ++++      +L  LL K      P+    
Sbjct: 225 AGAALTARLKKLGLPVEGAVFKDGSGLDRGDRLS----ADLLTALLVKAGDPAHPELRPV 280

Query: 211 YFSIRKFRYRNRIITNHNKLLNKM-HNIDGI---KTGYTRNSGFNIVTSLRYKDDPIVA 265
              +    +          L  +      G    KTG       ++  ++  +D  ++A
Sbjct: 281 LTGLPVAGFTGT-------LAGRYADGAAGTVRAKTGTLTGVN-SLAGTVVDRDGRLLA 331


>gi|227357021|ref|ZP_03841392.1| beta-lactamase/D-alanine carboxypeptidase [Proteus mirabilis ATCC
           29906]
 gi|227162824|gb|EEI47784.1| beta-lactamase/D-alanine carboxypeptidase [Proteus mirabilis ATCC
           29906]
          Length = 424

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            AS+TK+MT  ++ +     KL +   +
Sbjct: 130 IASITKLMTSEVMLKLQDDGKLLVTDPL 157


>gi|289583353|ref|YP_003481763.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Natrialba magadii ATCC 43099]
 gi|289532851|gb|ADD07201.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Natrialba magadii ATCC 43099]
          Length = 457

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 55 SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYL 93
          S    D+   + +     + P  PAS TK++T    F+ L
Sbjct: 35 SVYAADLRTGEPIVAANPNIPLLPASNTKLVTAARAFDEL 74


>gi|28883594|gb|AAO49769.1| beta-lactamase K1 [Klebsiella oxytoca]
          Length = 178

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 29  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 85

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 86  EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 138


>gi|281335990|gb|ADA62552.1| CTX-M-61-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|220911087|ref|YP_002486396.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Arthrobacter chlorophenolicus A6]
 gi|219857965|gb|ACL38307.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Arthrobacter chlorophenolicus A6]
          Length = 509

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 8/102 (7%)

Query: 57  IVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA---AT 112
           IV D    Q+   +   + R PAS  K++T       L   +    T++     A     
Sbjct: 119 IVQDALTGQVLFDRGGADGRVPASNMKLLTSVAALRALGP-EHTFATRVVAGPAANQVVL 177

Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS 154
                + L        E    A +T      +       +  
Sbjct: 178 VGGGDVLLGPGESKPGEVMGRAGLTTL---AAQTVASLQANG 216


>gi|281335962|gb|ADA62538.1| CTX-M-32-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|271964368|ref|YP_003338564.1| peptidoglycan glycosyltransferase [Streptosporangium roseum DSM
           43021]
 gi|270507543|gb|ACZ85821.1| Peptidoglycan glycosyltransferase [Streptosporangium roseum DSM
           43021]
          Length = 583

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 38/124 (30%), Gaps = 28/124 (22%)

Query: 55  SSIVIDVNKNQMTGFKQD----------------------EPRYPASLTKMMTLYIIFEY 92
           S+IVIDV   Q+                            +   P S  K++T     E 
Sbjct: 253 SAIVIDVPTGQVVAMANAPELDLKNWEKTAPEDWVNRSVTDVFEPGSTNKVITAAAALE- 311

Query: 93  LQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS 152
             S  +   T   V       +     L++      E+   + +  ++++V T       
Sbjct: 312 --SGAVRPETVFKVPDNIRCADRV---LRDSHPHPVERLTFSGVVATSSNVGTILASQRV 366

Query: 153 GSEK 156
           G EK
Sbjct: 367 GDEK 370


>gi|228995224|ref|ZP_04154942.1| hypothetical protein bpmyx0001_58440 [Bacillus pseudomycoides DSM
           12442]
 gi|228764521|gb|EEM13352.1| hypothetical protein bpmyx0001_58440 [Bacillus pseudomycoides DSM
           12442]
          Length = 669

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 16/34 (47%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +D     AS++K  T   + + +   KL L+  +
Sbjct: 104 KDTVFQIASVSKTFTALAVMQQVDKGKLKLDQDV 137


>gi|168703506|ref|ZP_02735783.1| hypothetical protein GobsU_28495 [Gemmata obscuriglobus UQM 2246]
          Length = 505

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 33/154 (21%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI-------PVSKTAATQNPS-KLYLKEK 123
           D     AS +K  T  ++       KL  + ++        +S   A ++ + +  L  +
Sbjct: 73  DTVFPIASCSKAFTATLLAMLADDGKLKWDDKVRDHLDYFRLSDELADRDVTLRDLLCHR 132

Query: 124 TYFTTEQGILALITRSANDVS----------------------TAFGEFISGSEK--KFA 159
           T       + A ++    DV                             I+G  +   +A
Sbjct: 133 TGMPRHDLLWAALSTDGADVIKRWGRAAPSTSFRSKWEYANVPFTTAGVIAGRYEKGTWA 192

Query: 160 ILMSNKAKK-IGMQNTIYKNASGLHDKNQITTAR 192
             +  +    +GM +T      G    N  T   
Sbjct: 193 DAVKARIFAPLGMTSTSATWKEGRGRPNHATPHY 226


>gi|319954232|ref|YP_004165499.1| peptidase s13 d-ala-d-ala carboxypeptidase c [Cellulophaga
          algicola DSM 14237]
 gi|319422892|gb|ADV50001.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Cellulophaga
          algicola DSM 14237]
          Length = 423

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 61 VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSK 96
          +N + +  +  ++   PAS TK+ TLY + + L  K
Sbjct: 51 LNNDTILKYNSEKYFTPASTTKIATLYTVLKTLPKK 86


>gi|294811663|ref|ZP_06770306.1| secreted protein [Streptomyces clavuligerus ATCC 27064]
 gi|294324262|gb|EFG05905.1| secreted protein [Streptomyces clavuligerus ATCC 27064]
          Length = 207

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 18/101 (17%)

Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILA--LITRSANDVSTAFGEFISGSEKKFAIL 161
           + VS  AA        L++       +   A  +I  S N+ ++     I G E      
Sbjct: 27  VKVSLLAAR-------LQQGRPLDARERERARLMIVHSDNEAASELYAAIGGPEG----- 74

Query: 162 MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLR 202
           +     ++G+  T    A GL      TTARDQ  L   + 
Sbjct: 75  LDAWHARLGLTATRAHRAWGLT----RTTARDQLALMTAVL 111


>gi|281336014|gb|ADA62564.1| CTX-M-58-like beta-lactamase [synthetic construct]
          Length = 291

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|281335974|gb|ADA62544.1| CTX-M-1-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|281335954|gb|ADA62534.1| CTX-M-61-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|253579444|ref|ZP_04856714.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849542|gb|EES77502.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 312

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 46/137 (33%), Gaps = 26/137 (18%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
            D+    ASL K+   YI+                    A  +N  ++  +     + + 
Sbjct: 110 NDQKMQAASLIKL---YIMG-------------------AVYENYDQITGQYG-RDSVDS 146

Query: 131 GILALITRSANDVSTAFGEFISGSE-KKFAILMSNKAKKIGMQNTIYKNA--SGLHDKNQ 187
            + ++IT S ND +     ++ G +       +++  +  G   T       +   + + 
Sbjct: 147 NLYSMITVSDNDAANTLTTYLGGGDSAAGMQAVNSFCQAHGYDQTHMGRMLLASNENDDN 206

Query: 188 ITTARDQAILGILLRKN 204
            T+  D   L   + K 
Sbjct: 207 YTSVGDCGHLLQEIYKQ 223


>gi|312872114|ref|ZP_07732189.1| hypothetical protein HMPREF9218_1203 [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092407|gb|EFQ50776.1| hypothetical protein HMPREF9218_1203 [Lactobacillus iners LEAF
           2062A-h1]
          Length = 302

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 33/169 (19%)

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            L   T +     I  ++  ++ND +    + +          ++  A ++G ++T   N
Sbjct: 146 GLIVNTSYAYPFLIQQMMYHNSNDAANILVKVLK------LEYINKVAAELGAKSTKIIN 199

Query: 179 ASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNID 238
           +    D  Q TTA    I   L R+                 N I+    +LLN   N  
Sbjct: 200 SFDQKDVGQTTTADMITIFTKLYRRQILTVNDC---------NLIL----RLLNTYPN-K 245

Query: 239 GIKTG--------YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           G+  G           N+   +V +        +   +G    + R  +
Sbjct: 246 GLAAGIPGICHYISDDNASCCLVNT---NGKVYIIAAIGG--DKNRFNQ 289


>gi|309799617|ref|ZP_07693842.1| penicillin-binding protein 1B [Streptococcus infantis SK1302]
 gi|308116768|gb|EFO54219.1| penicillin-binding protein 1B [Streptococcus infantis SK1302]
          Length = 213

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 14/60 (23%)

Query: 51  KPKYSSIVIDVNKNQMTGF----------KQ---DEPRYPASLTKMMTLY-IIFEYLQSK 96
           +P+  ++++D     + GF               D  R PAS TK +  Y I  +     
Sbjct: 69  QPEVGNVLMDNQTGAILGFVGGRDYQTNQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMG 128


>gi|282166177|gb|ADA80194.1| Beta-lactamase [Staphylococcus epidermidis]
          Length = 281

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 55/154 (35%), Gaps = 21/154 (13%)

Query: 31  MGKILFLSIIMISMAS--------------ELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           M K++FL +I + +++              E           +D    +   F  D+   
Sbjct: 1   MKKLIFLIVIALVLSACNSNSSHTQELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS +K +   I+ E +   K  LN ++ ++K         L        T ++ I A +
Sbjct: 61  YASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITLKELIEASM 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           T S N  +    + I G        +    K++G
Sbjct: 119 TYSDNTANNKIIKEIGG-----IKKVKQHLKELG 147


>gi|188587322|ref|YP_001918867.1| beta-lactamase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179352009|gb|ACB86279.1| beta-lactamase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 486

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 17/41 (41%)

Query: 64  NQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            +     ++     AS+TK  T   I +  +  KL L+  +
Sbjct: 53  GEKAYIDENTIMGIASITKTFTAAAILKLQEQGKLSLDDSV 93


>gi|87308515|ref|ZP_01090655.1| hypothetical protein DSM3645_14185 [Blastopirellula marina DSM
           3645]
 gi|87288607|gb|EAQ80501.1| hypothetical protein DSM3645_14185 [Blastopirellula marina DSM
           3645]
          Length = 382

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109
           D+   Q    K D     AS+TK +T   +   +   KL L+   P+SK 
Sbjct: 66  DLESGQ--PMKSDTMFAIASMTKPITATAVMMLVDEDKLSLDE--PISKY 111


>gi|281335978|gb|ADA62546.1| CTX-M-1 group beta-lactamase [synthetic construct]
          Length = 291

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|260776288|ref|ZP_05885183.1| beta-lactamase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607511|gb|EEX33776.1| beta-lactamase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 224

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 8/87 (9%)

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKE-KTYFTTEQGILALITRSANDVS 144
           LY+     + KKL+LN    V K +     S +  K      T ++   A +  S N  +
Sbjct: 14  LYLA----EQKKLNLNATTKV-KKSVLVTWSPITEKLIGQEITVQKACEATMLMSDNTAA 68

Query: 145 TAFGEFISGSEK--KFAILMSNKAKKI 169
                 I G E+  +F   + +K  ++
Sbjct: 69  NIVLHQIGGPEQVTQFVRSLDDKVTRL 95


>gi|214011137|gb|ACJ61335.1| RTG-4 [Acinetobacter baumannii]
          Length = 298

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 48/148 (32%), Gaps = 3/148 (2%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSK-TAATQNPSKL 118
           D+   +    K +E     S  K +    + + +   K  ++  +  S+    T +P   
Sbjct: 53  DLETGKRWEHKSNERFPLTSTFKTLACANVLQRVDLGKERIDRVVRFSESNLVTYSPVTE 112

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTIY 176
               K   +  +   A ++ S N  +    + I G +   KF   + +   ++    T  
Sbjct: 113 KHVGKKGMSLAELCQATLSTSDNSAANFILQAIGGPKALTKFLRSIGDDTTRLDRWETEL 172

Query: 177 KNASGLHDKNQITTARDQAILGILLRKN 204
             A     ++  T       L  LL   
Sbjct: 173 NEAVPGDKRDTTTPIAMVTTLEKLLIDE 200


>gi|160871813|ref|ZP_02061945.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Rickettsiella grylli]
 gi|159120612|gb|EDP45950.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Rickettsiella grylli]
          Length = 497

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 61  VNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYL 93
           ++  ++        R+ PAS  K+ T     EYL
Sbjct: 69  LSTGKIIYQYNANRRFIPASTLKLFTGIAALEYL 102


>gi|227534697|ref|ZP_03964746.1| beta-lactamase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227187453|gb|EEI67520.1| beta-lactamase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 306

 Score = 36.8 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 13/73 (17%)

Query: 60  DVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           D    ++      E  Y   S+ K +T  ++   ++  K+HL+   P+SK          
Sbjct: 31  DAESGRL---NGPETLYQIGSIQKGLTAVLLMRLVEQGKVHLSD--PISKYLT------- 78

Query: 119 YLKEKTYFTTEQG 131
            ++     T    
Sbjct: 79  GIRTGKQVTLRMM 91


>gi|224223444|gb|ACN39712.1| CTX-M-type extended spectrum beta-lactamase [Escherichia coli]
          Length = 291

 Score = 36.8 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 42/112 (37%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M    + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +    N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYGDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|187934502|ref|YP_001886278.1| beta-lactamase [Clostridium botulinum B str. Eklund 17B]
 gi|187722655|gb|ACD23876.1| putative beta-lactamase [Clostridium botulinum B str. Eklund 17B]
          Length = 487

 Score = 36.8 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 18/35 (51%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
             +     AS++K +T Y + + +   KL+L+  I
Sbjct: 80  NNETQFKIASISKSITSYAVMKLVDEGKLNLDEPI 114


>gi|309803347|ref|ZP_07697442.1| hypothetical protein HMPREF9214_0885 [Lactobacillus iners LactinV
           11V1-d]
 gi|308164511|gb|EFO66763.1| hypothetical protein HMPREF9214_0885 [Lactobacillus iners LactinV
           11V1-d]
          Length = 165

 Score = 36.8 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 33/169 (19%)

Query: 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
            L   T +     I  ++  ++ND +    + +          ++  A ++G ++T   N
Sbjct: 9   GLIVNTSYAYPFLIQQMMYHNSNDAANILVKVLK------LEYINKVAAELGAKSTKIIN 62

Query: 179 ASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNID 238
           +    D  Q TTA    I   L R+                 N I+    +LLN   N  
Sbjct: 63  SFDQKDVGQTTTADMITIFTKLYRRQILTVNDC---------NLIL----RLLNTYPN-K 108

Query: 239 GIKTG--------YTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
           G+  G           N+   +V +        +   +G    + R  +
Sbjct: 109 GLAAGIPGICHYISDDNASCCLVNT---NGKVYIIAAIGG--DKNRFNQ 152


>gi|239942231|ref|ZP_04694168.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           roseosporus NRRL 15998]
          Length = 491

 Score = 36.8 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 8/72 (11%)

Query: 127 TTEQGILALITRSANDVSTAFGEFIS---GSEKKFAILMSNKAKKIG-----MQNTIYKN 178
             +  +   +T S ND++ A     +   G    FA        ++      M    + +
Sbjct: 316 PLDALVERTLTNSDNDIAEALARQTAIAKGESASFAGARRAVTNELKKLKVPMAGAHFAD 375

Query: 179 ASGLHDKNQITT 190
            SGL  K+++T 
Sbjct: 376 GSGLDRKDRVTP 387


>gi|229145111|ref|ZP_04273503.1| hypothetical protein bcere0012_22690 [Bacillus cereus BDRD-ST24]
 gi|296503058|ref|YP_003664758.1| penicillin-binding protein [Bacillus thuringiensis BMB171]
 gi|228638309|gb|EEK94747.1| hypothetical protein bcere0012_22690 [Bacillus cereus BDRD-ST24]
 gi|296324110|gb|ADH07038.1| penicillin-binding protein [Bacillus thuringiensis BMB171]
          Length = 676

 Score = 36.8 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 16/34 (47%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +D     AS++K  T   + + +   KL L+  +
Sbjct: 104 KDTVFQIASVSKTFTALAVMQQVDKGKLKLDQDV 137


>gi|229178201|ref|ZP_04305572.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
 gi|228605331|gb|EEK62781.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
          Length = 363

 Score = 36.8 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 69/187 (36%), Gaps = 37/187 (19%)

Query: 22  IYIQRNIQLMGKILFLSIIMISMASE----------LHAKPKYSSIVIDVNKNQMTGFKQ 71
           + I   I ++G I F S+     + E           H   K +S+++  N   +T   +
Sbjct: 7   VGIIAGITIVGCIAFFSVKEYVNSKEDSNYVLNYIKEHKDDKTTSLIVKRNGETLTSINE 66

Query: 72  DEPRYPASLTKMMTLYIIFEYLQS---KKLHLNTQIPVSKT--------------AATQN 114
            E    AS++K++   I  EY +     K+  + +I + +               A   +
Sbjct: 67  KEKLPLASMSKIV---IAIEYAKQVAEGKIRKDEKISLKELEKYYVKNTDGGAHPAWLDD 123

Query: 115 PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM-QN 173
                L +    + E+ +  +I  S+N  ++   + +       A  ++   K++G+  +
Sbjct: 124 VKDKELVKGGQTSLEEVVKGMIHYSSNANASYLLDKLG------AARINESLKELGLNSH 177

Query: 174 TIYKNAS 180
             +    
Sbjct: 178 DEFYPTY 184


>gi|281335988|gb|ADA62551.1| CTX-M-1 group beta-lactamase [synthetic construct]
          Length = 291

 Score = 36.8 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|325527675|gb|EGD04972.1| beta-lactamase/D-alanine carboxypeptidase [Burkholderia sp. TJI49]
          Length = 323

 Score = 36.8 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           V+     Q      D      S++K +T  +  +  +  +L L   +
Sbjct: 70  VMSTQTGQPVAA--DTLFEIGSVSKTLTATLAADAQERGELSLTDPV 114


>gi|281335934|gb|ADA62524.1| CTX-M-52-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 36.8 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|197287279|ref|YP_002153151.1| beta-lactam binding protein AmpH [Proteus mirabilis HI4320]
 gi|194684766|emb|CAR46797.1| putative penicillin-binding protein [Proteus mirabilis HI4320]
          Length = 405

 Score = 36.8 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            AS+TK+MT  ++ +     KL +   +
Sbjct: 111 IASITKLMTSEVMLKLQDDGKLLVTDPL 138


>gi|226329626|ref|ZP_03805144.1| hypothetical protein PROPEN_03536 [Proteus penneri ATCC 35198]
 gi|225202812|gb|EEG85166.1| hypothetical protein PROPEN_03536 [Proteus penneri ATCC 35198]
          Length = 475

 Score = 36.8 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            AS+TK+MT  ++ +     KL +   +
Sbjct: 113 IASITKLMTSEVMLKLQDDGKLLVTDPL 140


>gi|28883561|gb|AAO49707.1| beta-lactamase [Klebsiella oxytoca]
          Length = 161

 Score = 36.8 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 15  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 71

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 72  EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 124


>gi|82548137|gb|ABB82608.1| beta-lactamase [Staphylococcus aureus]
          Length = 281

 Score = 36.8 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 55/154 (35%), Gaps = 14/154 (9%)

Query: 24  IQRNIQLMGKILFLSII--MISMASELHA-----KPKYSSIVIDVNKNQMTGFKQDEPRY 76
           +++ I L+   L LS      S A EL+              +D    +   F  D+   
Sbjct: 1   MKKLIFLIAIALVLSACNSXSSHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS +K +   I+ E +   K  LN +I + K         L        T ++ I A +
Sbjct: 61  YASTSKAINSAILLEQVPYNK--LNKKIHIXKDDIVAYSPILEKYVGKDITLKELIEASM 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             S N  +    + I G        +  + K++G
Sbjct: 119 AYSDNTANNKIIKEIGG-----IKKVKQRLKELG 147


>gi|281335984|gb|ADA62549.1| CTX-M-1 group beta-lactamase [synthetic construct]
          Length = 291

 Score = 36.8 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
             + T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVDGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|121495529|emb|CAL80726.1| beta-lactamase CTX-M-60 [Klebsiella pneumoniae]
          Length = 291

 Score = 36.8 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPSLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|332666888|ref|YP_004449676.1| beta-lactamase [Haliscomenobacter hydrossis DSM 1100]
 gi|332335702|gb|AEE52803.1| beta-lactamase [Haliscomenobacter hydrossis DSM 1100]
          Length = 395

 Score = 36.8 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 14/56 (25%)

Query: 64  NQMTG-----FKQDEPRYP---------ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
            Q+       +K  E R P         AS+TK +T  +     + +KL L+  I 
Sbjct: 22  GQVVYQESSGYKNLETREPMTIDTLFRIASMTKPITSVLAMILWEEQKLELDDPIT 77


>gi|229494575|ref|ZP_04388338.1| beta-lactamase [Rhodococcus erythropolis SK121]
 gi|229318937|gb|EEN84795.1| beta-lactamase [Rhodococcus erythropolis SK121]
          Length = 319

 Score = 36.8 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 40/115 (34%), Gaps = 11/115 (9%)

Query: 67  TGFKQDEPRYPASLTKM--MTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL-YLKEK 123
            G   D     AS  K+  M L +  +     ++ L  +I V     T  PS +  + + 
Sbjct: 36  IGSGADARSVTASTYKVPVM-LEVAAQA-SEGRIQLADRIKVPADRRTIGPSGISAMTDD 93

Query: 124 TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
              +     L ++  S N  +    E +          + ++ + +G+ +T    
Sbjct: 94  VEVSIRDLALLMMQVSDNTATDILQEMVGT------ENIMSRLRALGLNSTSITT 142


>gi|326442410|ref|ZP_08217144.1| peptidase [Streptomyces clavuligerus ATCC 27064]
          Length = 445

 Score = 36.8 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           D+    AS+TK     ++ +     KL L+  +
Sbjct: 75  DDHFRIASITKTFVATVVLQLEAEGKLSLDDTV 107


>gi|254388584|ref|ZP_05003818.1| alkaline D-peptidase and alkaline D-peptidase fusion [Streptomyces
           clavuligerus ATCC 27064]
 gi|294814006|ref|ZP_06772649.1| Alkaline d-peptidase [Streptomyces clavuligerus ATCC 27064]
 gi|197702305|gb|EDY48117.1| alkaline D-peptidase and alkaline D-peptidase fusion [Streptomyces
           clavuligerus ATCC 27064]
 gi|294326605|gb|EFG08248.1| Alkaline d-peptidase [Streptomyces clavuligerus ATCC 27064]
          Length = 535

 Score = 36.8 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           D+    AS+TK     ++ +     KL L+  +
Sbjct: 165 DDHFRIASITKTFVATVVLQLEAEGKLSLDDTV 197


>gi|270487149|ref|ZP_06204223.1| beta-lactamase [Yersinia pestis KIM D27]
 gi|270335653|gb|EFA46430.1| beta-lactamase [Yersinia pestis KIM D27]
          Length = 361

 Score = 36.8 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           + D     AS+TK+MT  I+ +      + L   + 
Sbjct: 83  RPDSLIRIASITKLMTSEIMVKLADDGIVKLTDPLK 118


>gi|269796488|ref|YP_003315943.1| D-alanyl-D-alanine carboxypeptidase [Sanguibacter keddieii DSM
           10542]
 gi|269098673|gb|ACZ23109.1| D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family
           [Sanguibacter keddieii DSM 10542]
          Length = 469

 Score = 36.8 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 6/71 (8%)

Query: 43  SMASELHAKPK----YSSIVIDVNKNQMT-GFKQDEPRYPASLTKMMTLYIIFEYLQSKK 97
           +    L A P        +V D    ++        PR PAS+ K+ T       L    
Sbjct: 80  AAVDALLADPAMGTSVGVVVSDALTGEVLVSATPGTPRVPASIQKIFTAAAALSTLDPDA 139

Query: 98  LHLNTQIPVSK 108
           + L T +  S 
Sbjct: 140 V-LTTTVTQSA 149


>gi|239988697|ref|ZP_04709361.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           roseosporus NRRL 11379]
          Length = 474

 Score = 36.8 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 8/72 (11%)

Query: 127 TTEQGILALITRSANDVSTAFGEFIS---GSEKKFAILMSNKAKKIG-----MQNTIYKN 178
             +  +   +T S ND++ A     +   G    FA        ++      M    + +
Sbjct: 299 PLDALVERTLTNSDNDIAEALARQTAIAKGESASFAGARRAVTNELKKLKVPMAGAHFAD 358

Query: 179 ASGLHDKNQITT 190
            SGL  K+++T 
Sbjct: 359 GSGLDRKDRVTP 370


>gi|238060056|ref|ZP_04604765.1| beta-lactamase [Micromonospora sp. ATCC 39149]
 gi|237881867|gb|EEP70695.1| beta-lactamase [Micromonospora sp. ATCC 39149]
          Length = 442

 Score = 36.8 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           S+TK MT  ++ +   +  L L+  + 
Sbjct: 63  SITKTMTAVLVMQQRDAGALALDDPLE 89


>gi|281427751|ref|YP_003347954.1| beta-lactamase [Staphylococcus aureus]
 gi|281307465|gb|ADA57912.1| beta-lactamase [Staphylococcus aureus]
          Length = 281

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 21/154 (13%)

Query: 31  MGKILFLSIIMISMAS----ELHAK----------PKYSSIVIDVNKNQMTGFKQDEPRY 76
           M K++FL  I + +++      HAK                 +D    +   F  D+   
Sbjct: 1   MKKLIFLIAIALVLSACNSNSPHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS +K +   I+ E +   K  LN +I ++K         L        T ++ I A +
Sbjct: 61  YASTSKAINSAILLEQVPYNK--LNKKIHINKDDIVAYSPILEKYVGKDITLKELIEASM 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           T S N  +    + I G        +  + K++G
Sbjct: 119 TYSDNTANNKIIKEIGG-----IKKVKQRLKELG 147


>gi|543893|sp|Q06316|BLAC_NOCLA RecName: Full=Beta-lactamase; AltName: Full=Penicillinase; Flags:
           Precursor
 gi|581412|emb|CAA78373.1| cmcBla [Amycolatopsis lactamdurans]
          Length = 302

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 2/96 (2%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
            +D    +   F+ DE    AS  K +    + +    ++  L+  +  SK    +N   
Sbjct: 64  AVDTGSGESVAFRADERFAFASTFKALAAAAVLDSTTPQQ--LDQVVRYSKDELLENSPI 121

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
                 T  T  +   A +  S N       + + G
Sbjct: 122 TKDHVATGMTLRELCDAAVRFSDNTAGNLLLKHVGG 157


>gi|87302132|ref|ZP_01084957.1| possible beta-lactamase family protein [Synechococcus sp. WH 5701]
 gi|87283057|gb|EAQ75013.1| possible beta-lactamase family protein [Synechococcus sp. WH 5701]
          Length = 362

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 38/133 (28%), Gaps = 16/133 (12%)

Query: 96  KKLHLNTQIPVSKTAATQNPSKLYLKE-KTYFTTEQGILALITRSANDVSTAFGEFISGS 154
            KL  N  +P++K         +  +   T F   +    +I  S N  +    + + G 
Sbjct: 142 GKLRWNEPLPLTKEVMGGGAGWMASRPLGTRFPFYEAATEMIRVSDNSATNLLIKRLGGK 201

Query: 155 EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQ----------AILGILLRKN 204
                   +   + +G+  T+  N     D    T+ RD             L    R +
Sbjct: 202 AAT-----NAHFQALGLPATVVNNWLPDLDGTNTTSPRDLARSIALVDIGEKLSPRARDH 256

Query: 205 FPQYYKYFSIRKF 217
           F            
Sbjct: 257 FRTIMATSRTNTL 269


>gi|228918191|ref|ZP_04081695.1| hypothetical protein bthur0012_53720 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228841471|gb|EEM86610.1| hypothetical protein bthur0012_53720 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 676

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 16/34 (47%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +D     AS++K  T   + + +   KL L+  +
Sbjct: 104 KDTVFQIASVSKTFTALAVMQQVDKGKLKLDEDV 137


>gi|145296397|ref|YP_001139218.1| hypothetical protein cgR_2311 [Corynebacterium glutamicum R]
 gi|140846317|dbj|BAF55316.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 342

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 20/38 (52%)

Query: 67  TGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            G   D+P   AS+TK+ T  ++   ++  ++  +T +
Sbjct: 72  LGAGPDDPFEIASITKIFTGELLRLQIERGEITESTTV 109


>gi|28883592|gb|AAO49768.1| beta-lactamase K1 [Klebsiella oxytoca]
          Length = 154

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 5   ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 61

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 62  EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 114


>gi|28883565|gb|AAO49709.1| beta-lactamase [Klebsiella oxytoca]
          Length = 156

 Score = 36.4 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPS 116
            + +Q+   + DE     S +K+M    + +  +S K  +N ++ +   AA        +
Sbjct: 15  ADNSQILY-RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEI--NAADLVVWSPIT 71

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           + +L+     T  +   A +  S N        ++ G EK   FA  + +   ++
Sbjct: 72  EKHLQSG--MTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRL 124


>gi|297158564|gb|ADI08276.1| beta-lactamase [Streptomyces bingchenggensis BCW-1]
          Length = 395

 Score = 36.4 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 19/75 (25%)

Query: 46  SELHAKPKYSSI---------------VIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYII 89
           ++L A    ++I               V D+   Q +     D      S+TK++T  ++
Sbjct: 56  ADLPADDATAAIIRVGGRAGSWQGAAGVRDLTSGQPVLA---DGRFRAGSVTKVLTAAVV 112

Query: 90  FEYLQSKKLHLNTQI 104
            + +   K+ LN  +
Sbjct: 113 LQLVAEHKVALNRPV 127


>gi|153006763|ref|YP_001381088.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152030336|gb|ABS28104.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 758

 Score = 36.4 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 43/138 (31%), Gaps = 20/138 (14%)

Query: 15  LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSS-----------------I 57
           + +P     +   +++    L + +   S A     +   ++                 +
Sbjct: 21  VAHPVRESSVIATVRVAAATLAVLLSAPSAAEPPTRRELEAALRSIVEGSALSGARAGVV 80

Query: 58  VIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSK-KLHLNTQI-PVSKTAATQN 114
           V DV   ++   +  +    PAS  K++T       L    +      + P S  AA+  
Sbjct: 81  VADVASGEVLYARDADVLLNPASNVKLVTSAAALARLGPGYRFSTELLVDPASARAASVR 140

Query: 115 PSKLYLKEKTYFTTEQGI 132
              +  +      TE+  
Sbjct: 141 TLYVRGRGDPTLVTERLW 158


>gi|33416277|ref|NP_878023.1| beta-lactamase [Staphylococcus aureus]
 gi|49483993|ref|YP_041217.1| beta-lactamase precursor [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|70726765|ref|YP_253679.1| beta-lactamase [Staphylococcus haemolyticus JCSC1435]
 gi|221141715|ref|ZP_03566208.1| beta-lactamase [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|227556019|ref|ZP_03986066.1| beta-lactamase [Enterococcus faecalis HH22]
 gi|253316025|ref|ZP_04839238.1| beta-lactamase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|257090977|ref|ZP_05585338.1| beta-lactamase [Enterococcus faecalis CH188]
 gi|257424357|ref|ZP_05600786.1| beta-lactamase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428659|ref|ZP_05605056.1| beta-lactamase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257433981|ref|ZP_05610333.1| beta-lactamase [Staphylococcus aureus subsp. aureus E1410]
 gi|257436885|ref|ZP_05612928.1| beta-lactamase [Staphylococcus aureus subsp. aureus M876]
 gi|262051902|ref|ZP_06024117.1| beta-lactamase precursor [Staphylococcus aureus 930918-3]
 gi|270208721|ref|YP_003329488.1| BlaZ [Staphylococcus aureus]
 gi|282904322|ref|ZP_06312210.1| beta-lactamase [Staphylococcus aureus subsp. aureus C160]
 gi|282906147|ref|ZP_06314002.1| beta-lactamase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282909064|ref|ZP_06316882.1| beta-lactamase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282912700|ref|ZP_06320495.1| beta-lactamase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282915400|ref|ZP_06323176.1| beta-lactamase [Staphylococcus aureus subsp. aureus M899]
 gi|282926065|ref|ZP_06333711.1| beta-lactamase [Staphylococcus aureus subsp. aureus C101]
 gi|283958501|ref|ZP_06375952.1| beta-lactamase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|289550249|ref|YP_003471153.1| Beta-lactamase [Staphylococcus lugdunensis HKU09-01]
 gi|289550973|ref|YP_003471877.1| Beta-lactamase [Staphylococcus lugdunensis HKU09-01]
 gi|293509101|ref|ZP_06667885.1| beta-lactamase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293511875|ref|ZP_06670568.1| beta-lactamase [Staphylococcus aureus subsp. aureus M809]
 gi|293550585|ref|ZP_06673256.1| beta-lactamase [Staphylococcus aureus subsp. aureus M1015]
 gi|296277000|ref|ZP_06859507.1| beta-lactamase [Staphylococcus aureus subsp. aureus MR1]
 gi|297590713|ref|ZP_06949351.1| beta-lactamase [Staphylococcus aureus subsp. aureus MN8]
 gi|304379795|ref|ZP_07362525.1| beta-lactamase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|312902900|ref|ZP_07762100.1| beta-lactamase [Enterococcus faecalis TX0635]
 gi|319893150|ref|YP_004150025.1| Beta-lactamase [Staphylococcus pseudintermedius HKU10-03]
 gi|115038|sp|P00807|BLAC_STAAU RecName: Full=Beta-lactamase; AltName: Full=Penicillinase; Flags:
           Precursor
 gi|150717|gb|AAA98239.1| beta-lactamase [Plasmid pI258]
 gi|537336|gb|AAA26642.1| beta-lactamase [Staphylococcus aureus]
 gi|537337|gb|AAA26643.1| beta-lactamase [Staphylococcus aureus]
 gi|551850|gb|AAA24777.1| beta-lactamase [Enterococcus faecalis HH22]
 gi|581568|emb|CAA27733.1| unnamed protein product [Staphylococcus aureus]
 gi|581590|emb|CAA36953.1| unnamed protein product [Staphylococcus aureus]
 gi|581591|emb|CAA34491.1| unnamed protein product [Staphylococcus aureus]
 gi|1575125|gb|AAB09464.1| beta-lactamase [Staphylococcus aureus]
 gi|8574411|emb|CAB94802.1| beta-lactamase [Staphylococcus haemolyticus]
 gi|30424548|gb|AAO24780.1| ampicillin resistance determinant [Shuttle vector pSK5645]
 gi|33390961|gb|AAQ17167.1| beta-lactamase [Staphylococcus aureus]
 gi|49242122|emb|CAG40822.1| beta-lactamase precursor [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|62754199|gb|AAX99120.1| BlaZ [Staphylococcus aureus]
 gi|67973202|gb|AAY84138.1| beta-lactamase [Staphylococcus aureus]
 gi|68447489|dbj|BAE05073.1| beta-lactamase [Staphylococcus haemolyticus JCSC1435]
 gi|98986156|dbj|BAE94456.1| beta-lactamase [Staphylococcus aureus]
 gi|98986160|dbj|BAE94459.1| beta-lactamase [Staphylococcus aureus]
 gi|209486303|gb|ACI48602.1| BlaZ [Staphylococcus aureus]
 gi|227174868|gb|EEI55840.1| beta-lactamase [Enterococcus faecalis HH22]
 gi|255914595|emb|CBA13541.1| beta-lactamase [Staphylococcus rostri]
 gi|256999789|gb|EEU86309.1| beta-lactamase [Enterococcus faecalis CH188]
 gi|257273375|gb|EEV05477.1| beta-lactamase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274530|gb|EEV06036.1| beta-lactamase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257281119|gb|EEV11262.1| beta-lactamase [Staphylococcus aureus subsp. aureus E1410]
 gi|257283796|gb|EEV13920.1| beta-lactamase [Staphylococcus aureus subsp. aureus M876]
 gi|259160229|gb|EEW45258.1| beta-lactamase precursor [Staphylococcus aureus 930918-3]
 gi|270269089|gb|ACZ66081.1| Beta-lactamase [Staphylococcus aureus]
 gi|270299789|gb|ACZ68595.1| Beta-lactamase [Staphylococcus aureus]
 gi|270300306|gb|ACZ69112.1| Beta-lactamase [Staphylococcus aureus]
 gi|270300353|gb|ACZ69159.1| Beta-lactamase [Staphylococcus aureus]
 gi|270300543|gb|ACZ69349.1| beta-lactamase [Staphylococcus aureus]
 gi|281334205|gb|ADA61289.1| Beta-lactamase [Staphylococcus aureus]
 gi|281334434|gb|ADA61518.1| Beta-lactamase [Staphylococcus sp. CDC25]
 gi|281334573|gb|ADA61657.1| Beta-lactamase [Staphylococcus aureus]
 gi|282165933|gb|ADA79953.1| Beta-lactamase [Staphylococcus aureus]
 gi|282166448|gb|ADA80464.1| Beta-lactamase [Staphylococcus aureus]
 gi|282166493|gb|ADA80509.1| Beta-lactamase [Staphylococcus aureus]
 gi|282166538|gb|ADA80554.1| Beta-lactamase [Staphylococcus aureus]
 gi|282166585|gb|ADA80601.1| Beta-lactamase [Staphylococcus aureus]
 gi|282166638|gb|ADA80654.1| Beta-lactamase [Staphylococcus aureus]
 gi|282166716|gb|ADA80732.1| Beta-lactamase [Staphylococcus aureus]
 gi|282166907|gb|ADA80923.1| Beta-lactamase [Staphylococcus aureus]
 gi|282166958|gb|ADA80974.1| Beta-lactamase [Staphylococcus aureus]
 gi|282167087|gb|ADA81103.1| Beta-lactamase [Staphylococcus aureus]
 gi|282167132|gb|ADA81148.1| Beta-lactamase [Staphylococcus aureus]
 gi|282167162|gb|ADA81178.1| Beta-lactamase [Staphylococcus aureus]
 gi|282312467|gb|EFB42872.1| beta-lactamase [Staphylococcus aureus subsp. aureus C101]
 gi|282320727|gb|EFB51062.1| beta-lactamase [Staphylococcus aureus subsp. aureus M899]
 gi|282323425|gb|EFB53742.1| beta-lactamase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327328|gb|EFB57623.1| beta-lactamase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331439|gb|EFB60953.1| beta-lactamase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595940|gb|EFC00904.1| beta-lactamase [Staphylococcus aureus subsp. aureus C160]
 gi|283790650|gb|EFC29467.1| beta-lactamase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|289179781|gb|ADC87026.1| Beta-lactamase [Staphylococcus lugdunensis HKU09-01]
 gi|289180505|gb|ADC87750.1| Beta-lactamase [Staphylococcus lugdunensis HKU09-01]
 gi|290918648|gb|EFD95725.1| beta-lactamase [Staphylococcus aureus subsp. aureus M1015]
 gi|291094667|gb|EFE24942.1| beta-lactamase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291465317|gb|EFF07850.1| beta-lactamase [Staphylococcus aureus subsp. aureus M809]
 gi|297575599|gb|EFH94315.1| beta-lactamase [Staphylococcus aureus subsp. aureus MN8]
 gi|302752449|gb|ADL66626.1| beta-lactamase precursor, BlaZ [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304341598|gb|EFM07507.1| beta-lactamase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|310633718|gb|EFQ17001.1| beta-lactamase [Enterococcus faecalis TX0635]
 gi|312439084|gb|ADQ78154.1| beta-lactamase [Staphylococcus aureus subsp. aureus TCH60]
 gi|315161873|gb|EFU05890.1| beta-lactamase [Enterococcus faecalis TX0645]
 gi|315195659|gb|EFU26046.1| beta-lactamase [Staphylococcus aureus subsp. aureus CGS00]
 gi|315578236|gb|EFU90427.1| beta-lactamase [Enterococcus faecalis TX0630]
 gi|317162846|gb|ADV06389.1| Beta-lactamase [Staphylococcus pseudintermedius HKU10-03]
 gi|323465447|gb|ADX77600.1| beta-lactamase [Staphylococcus pseudintermedius ED99]
 gi|329732820|gb|EGG69167.1| beta-lactamase [Staphylococcus aureus subsp. aureus 21193]
          Length = 281

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 21/154 (13%)

Query: 31  MGKILFLSIIMISMAS----ELHAK----------PKYSSIVIDVNKNQMTGFKQDEPRY 76
           M K++FL +I + +++      HAK                 +D    +   F  D+   
Sbjct: 1   MKKLIFLIVIALVLSACNSNSSHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS +K +   I+ E +   K  LN ++ ++K         L        T +  I A +
Sbjct: 61  YASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASM 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           T S N  +    + I G        +  + K++G
Sbjct: 119 TYSDNTANNKIIKEIGG-----IKKVKQRLKELG 147


>gi|269942161|emb|CBI50575.1| beta-lactamase precursor [Staphylococcus aureus subsp. aureus TW20]
          Length = 281

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 21/154 (13%)

Query: 31  MGKILFLSIIMISMAS----ELHAK----------PKYSSIVIDVNKNQMTGFKQDEPRY 76
           M K++FL +I + +++      HAK                 +D    +   F  D+   
Sbjct: 1   MKKLIFLIVIALVLSACNSNSSHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS +K +   I+ E +   K  LN ++ ++K         L        T +  I A +
Sbjct: 61  YASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITLKPLIEASM 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           T S N  +    + I G        +  + K++G
Sbjct: 119 TYSDNTANNKIIKEIGG-----IKKVKQRLKELG 147


>gi|300775566|ref|ZP_07085427.1| possible penicillin-binding protein [Chryseobacterium gleum ATCC
           35910]
 gi|300505593|gb|EFK36730.1| possible penicillin-binding protein [Chryseobacterium gleum ATCC
           35910]
          Length = 506

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 28  IQLMGKILFLSIIMISMASELHAKPKYS---SIVIDVNKNQMTGFKQ------------- 71
           + L+G + FL      + S   AK +      +++   KN++   K              
Sbjct: 25  MCLIGPLSFLQSQTTKLDSYFSAKAEQGDFNGVILVAEKNKILYQKAFGFADFENKVPNT 84

Query: 72  -DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
                   S+TK++T   + + +  K L  +  +  
Sbjct: 85  IHTRFPIGSITKLLTATAVLQLVDKKLLEPDKPVKF 120


>gi|218263706|ref|ZP_03477733.1| hypothetical protein PRABACTJOHN_03423 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222563|gb|EEC95213.1| hypothetical protein PRABACTJOHN_03423 [Parabacteroides johnsonii
           DSM 18315]
          Length = 249

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 9/102 (8%)

Query: 86  LYIIFEYLQSKKLHLNTQIPVS----KTAATQNPSKLYLKEKTYFTTEQGILALITRSAN 141
              +  ++ +  + L+  +  S    K        K Y K +   T  + +   +  S N
Sbjct: 71  ALTVANWVDTNNMSLSDTVTFSGKSLKEDTYSPMLKKYGKSRNAMTVRELLEWSLVESDN 130

Query: 142 DVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH 183
           + +      + G         ++K ++IG+ + I   AS   
Sbjct: 131 NAADILLNCVGG-----VSGATSKMRQIGISDEIVIGASEED 167


>gi|38155797|gb|AAR12681.1| beta-lactamase [Staphylococcus aureus]
          Length = 179

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 21/154 (13%)

Query: 31  MGKILFLSIIMISMAS----ELHAK----------PKYSSIVIDVNKNQMTGFKQDEPRY 76
           M K++FL +I + +++      HAK                 +D    +   F  D+   
Sbjct: 1   MKKLIFLIVIALVLSACNSNSSHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS +K +   I+ E +   K  LN ++ ++K         L        T +  I A +
Sbjct: 61  YASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASM 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           T S N  +    + I G        +  + K++G
Sbjct: 119 TYSDNTANNKIIKEIGG-----IKKVKQRLKELG 147


>gi|19852070|gb|AAL99990.1|AF488377_1 CTX-M type beta-lactamase [Escherichia coli]
          Length = 291

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 5/133 (3%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQNTIYK 177
               T  +  +   A +  S N         + G  S   FA  + ++  ++    T   
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTETTLN 173

Query: 178 NASGLHDKNQITT 190
            A     ++  + 
Sbjct: 174 TAIPGDPRDTTSP 186


>gi|313510880|gb|ADR66515.1| beta-lactamase CTX-M-79 [Escherichia coli]
          Length = 288

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 52  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 110

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 111 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 161


>gi|281335968|gb|ADA62541.1| CTX-M-57-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|228961876|ref|ZP_04123430.1| hypothetical protein bthur0005_52860 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228797796|gb|EEM44855.1| hypothetical protein bthur0005_52860 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 693

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 16/34 (47%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           +D     AS++K  T   + + +   KL L+  +
Sbjct: 121 KDTVFQIASVSKTFTALAVMQQVDKGKLKLDQDV 154


>gi|27380820|ref|NP_772349.1| hypothetical protein bll5709 [Bradyrhizobium japonicum USDA 110]
 gi|27353985|dbj|BAC50974.1| bll5709 [Bradyrhizobium japonicum USDA 110]
          Length = 446

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 6/57 (10%)

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILAL 135
           S++K +T  +    ++  K+ L+   PVS+      PS   +K       + G  +L
Sbjct: 117 SMSKAITSVVAVRLIEDGKIKLDD--PVSQYI----PSFANVKVGVEKKADDGTKSL 167


>gi|209528054|ref|ZP_03276533.1| conserved hypothetical protein [Arthrospira maxima CS-328]
 gi|209491510|gb|EDZ91886.1| conserved hypothetical protein [Arthrospira maxima CS-328]
          Length = 451

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 72/205 (35%), Gaps = 30/205 (14%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
           PASL K+     +      +++  + +I V     T++ S   ++ +  ++ +  +  +I
Sbjct: 235 PASLIKVPVAIALLHKAAEEQVSFDQEIYVEGGNFTEDASS--IRARQSYSLQMLMAQMI 292

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI------------YKNASGLHD 184
             S+N  +    +++S      A  ++   ++ G Q T             ++   G   
Sbjct: 293 DHSSNIATNQLIDYLS------ADYINKLLERHGYQKTRVQFKLMGDRIMPFRPGRG--- 343

Query: 185 KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY-RNRIITNHNKLLNKMHNIDGIKTG 243
           +N +T+     ++  +     P           +Y R         L        G KTG
Sbjct: 344 RNSMTSDELTEMMVEIYNYEHPHSELLIEALGHQYDREIGYQ---ALQGLKAQWLGEKTG 400

Query: 244 -YTRNSGFNIVTSLRYKDDPIVAVV 267
             +R  G  +  S+    +  +  +
Sbjct: 401 QNSRVIGTTLAASI--DGERYIITI 423


>gi|55820181|ref|YP_138623.1| D-alanyl-D-alanine carboxypeptidase, truncated [Streptococcus
           thermophilus LMG 18311]
 gi|55736166|gb|AAV59808.1| D-alanyl-D-alanine carboxypeptidase, truncated [Streptococcus
           thermophilus LMG 18311]
          Length = 55

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 88  IIFEYLQSKKLHLNTQIPVSKTA----ATQNPSKLYLKEKTYFTTEQGILALIT 137
           ++++ +    L  NT++ +S        +   S + L  +  +T +Q + A + 
Sbjct: 1   MVYKAVDQGDLKWNTKVDISDYPFELTVSAGVSNIPLDAR-KYTVKQLLDATLI 53


>gi|269962861|ref|ZP_06177201.1| hypothetical protein VME_35850 [Vibrio harveyi 1DA3]
 gi|269832415|gb|EEZ86534.1| hypothetical protein VME_35850 [Vibrio harveyi 1DA3]
          Length = 466

 Score = 36.4 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 20/27 (74%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           AS++K MT  ++ + +++ KL LNT++
Sbjct: 96  ASISKTMTATMVMQLIEANKLSLNTKL 122


>gi|67973162|gb|AAY84113.1| beta-lactamase [Staphylococcus epidermidis]
          Length = 180

 Score = 36.4 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 21/154 (13%)

Query: 31  MGKILFLSIIMISMAS----ELHAK----------PKYSSIVIDVNKNQMTGFKQDEPRY 76
           M K++FL +I + +++      HAK                 +D    +   F  D+   
Sbjct: 1   MKKLIFLIVIALVLSACNSNSSHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS +K +   I+ E +   K  LN ++ ++K         L        T +  I A +
Sbjct: 61  YASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASM 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           T S N  +    + I G        +  + K++G
Sbjct: 119 TYSDNTANNKIIKEIGG-----IKKVKQRLKELG 147


>gi|317446360|emb|CBW46935.1| extended-spectrum beta-lactamase [Escherichia coli]
          Length = 291

 Score = 36.4 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 54/149 (36%), Gaps = 13/149 (8%)

Query: 33  KILFLSIIMISMASELH----AKPKYS------SIVIDVNKNQMTGFKQDEPRYPASLTK 82
            +L  S+ + + A+++     A  K S      +++   +  Q    + DE     S +K
Sbjct: 18  SLLLASVPLCAQANDVQQKLAALEKSSGGRLGVALINTADNTQTLY-RADERFAMCSTSK 76

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +M    + +  +++K  L+ ++ +  +                 T  +   A +  S N 
Sbjct: 77  VMAAAAVLKQSETQKGLLSQRVEIKPSDLINYNPIAEKHVNGTMTFGELSAAALQYSDNT 136

Query: 143 VSTAFGEFISGSEK--KFAILMSNKAKKI 169
                   + G +K   FA  + +   ++
Sbjct: 137 AMNKLIAHLGGPDKVTAFARTIGDDTFRL 165


>gi|118490296|gb|ABK96852.1| beta-lactamase [Staphylococcus aureus]
          Length = 263

 Score = 36.4 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 55/152 (36%), Gaps = 17/152 (11%)

Query: 29  QLMGKILFLSIIMISMASELHAK----------PKYSSIVIDVNKNQMTGFKQDEPRYPA 78
           +L+  I+   ++    ++  HAK                 +D    +   F  D+    A
Sbjct: 1   KLIFLIVMALVLSACNSNSSHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFAYA 60

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           S +K +   I+ E +   K  LN ++ ++K         L        T ++ I A +T 
Sbjct: 61  STSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITLKELIEASMTY 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           S N  +    + I G        +  + K++G
Sbjct: 119 SDNTANNKIIKEIGG-----IKKVKQRLKELG 145


>gi|38155789|gb|AAR12676.1| beta-lactamase [Staphylococcus aureus]
          Length = 179

 Score = 36.4 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 61/154 (39%), Gaps = 14/154 (9%)

Query: 24  IQRNIQLMGKILFLSII--MISMASELH-AKPKYSS----IVIDVNKNQMTGFKQDEPRY 76
           +++ I L+   L LS      S A EL+  + KY++      +D    +   F  D+   
Sbjct: 1   MKKLILLIAIALVLSACNSTSSHAKELNNLEKKYNANIGVYALDTKSGKEVKFNADKRFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS +K +   I+ E +   K  LN ++ ++K         L        T +  I A +
Sbjct: 61  YASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASM 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           T S N  +    + I G        +  + K++G
Sbjct: 119 TYSDNTANNKIIKEIGG-----IKKVKQRLKELG 147


>gi|26000705|gb|AAN75444.1| CTX-M-26 beta-lactamase [Klebsiella pneumoniae]
 gi|38373218|gb|AAR18979.1| beta-lactamase CTX-M-26 [Klebsiella pneumoniae]
          Length = 291

 Score = 36.4 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 54/149 (36%), Gaps = 13/149 (8%)

Query: 33  KILFLSIIMISMASELH----AKPKYS------SIVIDVNKNQMTGFKQDEPRYPASLTK 82
            +L  S+ + + A+++     A  K S      +++   +  Q    + DE     S +K
Sbjct: 18  SLLLASVPLCAQANDVQQKLAALEKSSGGRLGVALINTADNTQTLY-RADERFAMCSTSK 76

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +M    + +  +++K  L+ ++ +  +                 T  +   A +  S N 
Sbjct: 77  VMAAAAVLKQSETQKGLLSQRVEIKPSDLINYNPIAEKHVNGTMTFGELSAAALQYSDNT 136

Query: 143 VSTAFGEFISGSEK--KFAILMSNKAKKI 169
                   + G +K   FA  + +   ++
Sbjct: 137 AMNKLIAHLGGPDKVTAFARTIGDDTFRL 165


>gi|228472571|ref|ZP_04057331.1| putative penicillin-binding protein 2 [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228275984|gb|EEK14740.1| putative penicillin-binding protein 2 [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 667

 Score = 36.4 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 50/146 (34%), Gaps = 26/146 (17%)

Query: 56  SIVIDVNKNQM-----TGFKQD------------EPRYPASLTKMMTLYIIFEYLQSKKL 98
           ++V++V   ++      G  +D            E   P S+ K ++L +  E     K+
Sbjct: 267 AVVMEVATGEIKAISNLGRNKDGSYGERFNYALGETYEPGSVFKTVSLVVALEE---AKI 323

Query: 99  HLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKF 158
                +   K   +    +++   +  + T     A+   S   +     +      KKF
Sbjct: 324 DTTYTVDTKKGVISFYGREVWDSNRRGYGTINLSKAMQVSSNTAIVQMVHDLFGKDPKKF 383

Query: 159 AILMSNK--AKKIGM----QNTIYKN 178
              ++     +K+GM    + T +  
Sbjct: 384 VGRINKMHLNRKLGMPILGEGTPFVP 409


>gi|166009954|ref|ZP_02230852.1| putative penicillin-binding protein AmpH [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|167400366|ref|ZP_02305879.1| putative penicillin-binding protein AmpH [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167424102|ref|ZP_02315855.1| putative penicillin-binding protein AmpH [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|294503238|ref|YP_003567300.1| penicillin-binding protein [Yersinia pestis Z176003]
 gi|165991350|gb|EDR43651.1| putative penicillin-binding protein AmpH [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|167050315|gb|EDR61723.1| putative penicillin-binding protein AmpH [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167056951|gb|EDR66714.1| putative penicillin-binding protein AmpH [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|294353697|gb|ADE64038.1| penicillin-binding protein [Yersinia pestis Z176003]
          Length = 384

 Score = 36.4 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           + D     AS+TK+MT  I+ +      + L   + 
Sbjct: 84  RPDSLIRIASITKLMTSEIMVKLADDGIVKLTDPLK 119


>gi|162418245|ref|YP_001605964.1| beta-lactam binding protein AmpH [Yersinia pestis Angola]
 gi|165924405|ref|ZP_02220237.1| putative penicillin-binding protein AmpH [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936224|ref|ZP_02224793.1| putative penicillin-binding protein AmpH [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166211310|ref|ZP_02237345.1| putative penicillin-binding protein AmpH [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167419688|ref|ZP_02311441.1| putative penicillin-binding protein AmpH [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|162351060|gb|ABX85008.1| putative penicillin-binding protein AmpH [Yersinia pestis Angola]
 gi|165915838|gb|EDR34446.1| putative penicillin-binding protein AmpH [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923465|gb|EDR40597.1| putative penicillin-binding protein AmpH [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|166207081|gb|EDR51561.1| putative penicillin-binding protein AmpH [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962429|gb|EDR58450.1| putative penicillin-binding protein AmpH [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|262361277|gb|ACY57998.1| putative penicillin-binding protein AmpH [Yersinia pestis D106004]
 gi|262365186|gb|ACY61743.1| putative penicillin-binding protein AmpH [Yersinia pestis D182038]
          Length = 383

 Score = 36.4 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           + D     AS+TK+MT  I+ +      + L   + 
Sbjct: 83  RPDSLIRIASITKLMTSEIMVKLADDGIVKLTDPLK 118


>gi|157963001|ref|YP_001503035.1| beta-lactamase [Shewanella pealeana ATCC 700345]
 gi|157848001|gb|ABV88500.1| beta-lactamase [Shewanella pealeana ATCC 700345]
          Length = 389

 Score = 36.4 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFT 127
            ASL+K +T  ++ + +    + L   +  S   A Q N +KLY+      +
Sbjct: 79  IASLSKQVTAALVLKAVDEGLIELEQSV--SHYLAKQANEAKLYIPPSVTVS 128


>gi|61741615|gb|AAX54694.1| beta-lactamase CTX-M-39 [Escherichia coli]
          Length = 291

 Score = 36.4 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 54/149 (36%), Gaps = 13/149 (8%)

Query: 33  KILFLSIIMISMASELH----AKPKYS------SIVIDVNKNQMTGFKQDEPRYPASLTK 82
            +L  S+ + + A+++     A  K S      +++   +  Q    + DE     S +K
Sbjct: 18  SLLLASVPLCAQANDVQQKLAALEKSSGGRLGVALINTADNTQTLY-RADERFAMCSTSK 76

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSAND 142
           +M    + +  +++K  L+ ++ +  +                 T  +   A +  S N 
Sbjct: 77  VMAAAAVLKQSETQKGLLSQRVEIKPSDLINYNPIAEKHVNGTMTFGELSAAALQYSDNT 136

Query: 143 VSTAFGEFISGSEK--KFAILMSNKAKKI 169
                   + G +K   FA  + +   ++
Sbjct: 137 AMNKLIAHLGGPDKVTAFARTIGDDTFRL 165


>gi|22126841|ref|NP_670264.1| beta-lactam binding protein AmpH [Yersinia pestis KIM 10]
 gi|45440755|ref|NP_992294.1| beta-lactam binding protein AmpH [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51595606|ref|YP_069797.1| beta-lactam binding protein AmpH [Yersinia pseudotuberculosis IP
           32953]
 gi|108806936|ref|YP_650852.1| beta-lactam binding protein AmpH [Yersinia pestis Antiqua]
 gi|108812913|ref|YP_648680.1| beta-lactam binding protein AmpH [Yersinia pestis Nepal516]
 gi|145599740|ref|YP_001163816.1| beta-lactam binding protein AmpH [Yersinia pestis Pestoides F]
 gi|149366787|ref|ZP_01888821.1| putative penicillin-binding protein [Yersinia pestis CA88-4125]
 gi|153947699|ref|YP_001401721.1| beta-lactam binding protein AmpH [Yersinia pseudotuberculosis IP
           31758]
 gi|170025060|ref|YP_001721565.1| beta-lactam binding protein AmpH [Yersinia pseudotuberculosis
           YPIII]
 gi|186894671|ref|YP_001871783.1| beta-lactam binding protein AmpH [Yersinia pseudotuberculosis
           PB1/+]
 gi|218928381|ref|YP_002346256.1| beta-lactam binding protein AmpH [Yersinia pestis CO92]
 gi|229841171|ref|ZP_04461330.1| putative penicillin-binding protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843276|ref|ZP_04463422.1| putative penicillin-binding protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229894109|ref|ZP_04509295.1| putative penicillin-binding protein [Yersinia pestis Pestoides A]
 gi|229903342|ref|ZP_04518455.1| putative penicillin-binding protein [Yersinia pestis Nepal516]
 gi|21959871|gb|AAM86515.1|AE013897_11 putative enzyme [Yersinia pestis KIM 10]
 gi|45435613|gb|AAS61171.1| putative penicillin-binding protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51588888|emb|CAH20502.1| putative penicillin-binding protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108776561|gb|ABG19080.1| penicillin-binding protein [Yersinia pestis Nepal516]
 gi|108778849|gb|ABG12907.1| putative penicillin-binding protein [Yersinia pestis Antiqua]
 gi|115346992|emb|CAL19884.1| putative penicillin-binding protein [Yersinia pestis CO92]
 gi|145211436|gb|ABP40843.1| penicillin-binding protein [Yersinia pestis Pestoides F]
 gi|149291161|gb|EDM41236.1| putative penicillin-binding protein [Yersinia pestis CA88-4125]
 gi|152959194|gb|ABS46655.1| putative penicillin-binding protein AmpH [Yersinia
           pseudotuberculosis IP 31758]
 gi|169751594|gb|ACA69112.1| beta-lactamase [Yersinia pseudotuberculosis YPIII]
 gi|186697697|gb|ACC88326.1| beta-lactamase [Yersinia pseudotuberculosis PB1/+]
 gi|229679112|gb|EEO75215.1| putative penicillin-binding protein [Yersinia pestis Nepal516]
 gi|229689623|gb|EEO81684.1| putative penicillin-binding protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697537|gb|EEO87584.1| putative penicillin-binding protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229703994|gb|EEO91007.1| putative penicillin-binding protein [Yersinia pestis Pestoides A]
 gi|320015933|gb|ADV99504.1| putative penicillin-binding protein [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 388

 Score = 36.4 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           + D     AS+TK+MT  I+ +      + L   + 
Sbjct: 88  RPDSLIRIASITKLMTSEIMVKLADDGIVKLTDPLK 123


>gi|225163408|ref|ZP_03725726.1| beta-lactamase [Opitutaceae bacterium TAV2]
 gi|224801996|gb|EEG20274.1| beta-lactamase [Opitutaceae bacterium TAV2]
          Length = 403

 Score = 36.4 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 16/63 (25%)

Query: 56  SIVIDVNKNQMT------GFKQDEPRY--------PASLTKMMTLYIIFEYLQSKKLHLN 101
            +V D +   +            + R          AS+TK MT   +   ++  K+ L+
Sbjct: 52  WLVADADG--VLDCEGIGYANVAKRRPMKPDTFFWIASITKPMTTVALMMLVEEGKIGLD 109

Query: 102 TQI 104
             +
Sbjct: 110 DPV 112


>gi|216700341|ref|YP_002332251.1| extended-spectrum beta-lactamase CTX-M-53 [Salmonella enterica
           subsp. enterica serovar Westhampton]
 gi|82393853|gb|ABB72225.1| extended-spectrum beta-lactamase CTX-M-53 [Salmonella enterica
           subsp. enterica serovar Westhampton]
          Length = 291

 Score = 36.4 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|294678149|ref|YP_003578764.1| penicillin-binding protein 4 [Rhodobacter capsulatus SB 1003]
 gi|294476969|gb|ADE86357.1| penicillin-binding protein 4 [Rhodobacter capsulatus SB 1003]
          Length = 482

 Score = 36.4 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 53 KYSSIVIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFEYL 93
              +V D     +   +   +P  PAS  K +T     E L
Sbjct: 49 DVGYVVADARSGLVLEARDGGKPMAPASTAKAITTLYALETL 90


>gi|281335992|gb|ADA62553.1| CTX-M-79-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 36.4 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|281335912|gb|ADA62513.1| CTX-M-57-like beta-lactamase [synthetic construct]
          Length = 291

 Score = 36.4 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|223044446|ref|ZP_03614478.1| beta-lactamase [Staphylococcus capitis SK14]
 gi|222442175|gb|EEE48288.1| beta-lactamase [Staphylococcus capitis SK14]
          Length = 281

 Score = 36.4 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 21/154 (13%)

Query: 31  MGKILFLSIIMISMAS----ELHAK----------PKYSSIVIDVNKNQMTGFKQDEPRY 76
           M K++FL  I + +++      HAK                 +D    +   F  D+   
Sbjct: 1   MKKLIFLIAIALVLSACNSNSPHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS +K +   I+ E +   K  LN +I ++K         L        T ++ I A +
Sbjct: 61  YASTSKAINSAILLEQVPYNK--LNKKIHINKDDIVAYSPILEKYVGKDITLKELIEASM 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           T S N  +    + I G        +  + K++G
Sbjct: 119 TYSDNTANNKIIKEIGG-----IKKVKQRLKELG 147


>gi|118490294|gb|ABK96851.1| beta-lactamase [Staphylococcus aureus]
          Length = 266

 Score = 36.4 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 55/152 (36%), Gaps = 17/152 (11%)

Query: 29  QLMGKILFLSIIMISMASELHAK----------PKYSSIVIDVNKNQMTGFKQDEPRYPA 78
           +L+  I+   ++    ++  HAK                 +D    +   F  D+    A
Sbjct: 1   KLIFLIVMALVLSACNSNSSHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFAYA 60

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           S +K +   I+ E +   K  LN ++ ++K         L        T ++ I A +T 
Sbjct: 61  STSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITLKELIEASMTY 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           S N  +    + I G        +  + K++G
Sbjct: 119 SDNTANNKIIKEIGG-----IKKVKQRLKELG 145


>gi|331695876|ref|YP_004332115.1| beta-lactamase [Pseudonocardia dioxanivorans CB1190]
 gi|326950565|gb|AEA24262.1| beta-lactamase [Pseudonocardia dioxanivorans CB1190]
          Length = 417

 Score = 36.4 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 32/112 (28%), Gaps = 18/112 (16%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           V D+          D     AS TK  T  +I + +   ++ L+ +  +S+  A      
Sbjct: 85  VSDLTTGAPIA--PDMQFKIASQTKAFTGNLILQLVGEGRVGLDDR--ISRWVA------ 134

Query: 118 LYLKEKTYFTTEQ-------GILALITRSANDVSTAFGEFISGSEKKFAILM 162
             +      T  Q            + +  N    A G   +      A   
Sbjct: 135 -GVPNGDRITIRQLLTMTSGLSTGFLLQEENVAKLATGCTEADVLAAGAAEP 185


>gi|281335980|gb|ADA62547.1| CTX-M-61-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 36.4 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|116496193|ref|YP_807927.1| Beta-lactamase class A [Lactobacillus casei ATCC 334]
 gi|116106343|gb|ABJ71485.1| Beta-lactamase class A [Lactobacillus casei ATCC 334]
          Length = 261

 Score = 36.4 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 77/229 (33%), Gaps = 38/229 (16%)

Query: 56  SIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           ++++  +   +    Q D+P   ASL K+     + E        L  Q+ + +   +  
Sbjct: 22  ALLV-ADTRHVLFGAQVDQPFPAASLIKLGIAAFVKEKAADDPSQLERQVTLPE---SVG 77

Query: 115 PSKL--YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNK--AKKIG 170
            + +  ++     +     +  ++T S N  + A            A  ++      ++ 
Sbjct: 78  GAGILRFMSP-QAWRVRDLLTLMLTVSDNLATNALLTTYG--LPTIAAWLTRHYPGVQLR 134

Query: 171 --MQNTIYKNASGLHDKNQITTARDQ-AILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227
             +  + +       D + + TA     +L  LL  +  +       +  R+      N 
Sbjct: 135 RPLMQSTF-------DGDNMITASAAWQLLRALLMSDGNEPAADICAQALRH----QQNR 183

Query: 228 NKLL--NKMHNIDG---IKTG---YTRNSGFNIVTSLRYKDDPIVAVVM 268
            KLL    M N  G    KTG   +  +           + + + AVV+
Sbjct: 184 TKLLLAPTMENFVGWLAGKTGELPHCEHDAACFAA----EGERLYAVVL 228


>gi|224539067|ref|ZP_03679606.1| hypothetical protein BACCELL_03967 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519312|gb|EEF88417.1| hypothetical protein BACCELL_03967 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 301

 Score = 36.4 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 62/176 (35%), Gaps = 31/176 (17%)

Query: 89  IFEYLQSKKLHLNTQIPV-SKTAATQNPSKL---YLKEKTYFTTEQGILALITRSANDVS 144
           + + +    + L++ I V S    +   S L   +  +    +  + +   I++S N+  
Sbjct: 79  VLDKMDKGHIALDSLIEVKSSQLKSNTYSPLRDKFPDQDITISLGELLKYTISKSDNNTC 138

Query: 145 TAFGEFISGSEKKFAILMSNKAKKIGMQN------TIYKNASGLHDKNQITTARDQAILG 198
               E++ G        ++   K +G+++          + SG  D N  +T  +   L 
Sbjct: 139 DILIEYVGG-----IDQVNEYVKSLGIKDCNLAATETLMHTSGDTDLN-WSTPEEVVRLL 192

Query: 199 ILLRK------NFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHN--IDGIKTGYTR 246
            +  K       +  + +         ++       KL  ++    I G KTG + 
Sbjct: 193 NIADKQPLFGTQYKDFLQAIMQETSTGKD-------KLKGQLPADVIVGHKTGSSD 241


>gi|66220180|gb|AAY43008.1| beta-lactamase CTX-M-41 [Proteus mirabilis]
          Length = 291

 Score = 36.4 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 59/151 (39%), Gaps = 17/151 (11%)

Query: 33  KILFLSIIMISMASELH----AKPKYS------SIVIDVNKNQMTGFKQDEPRYPASLTK 82
            +L  S+ + + A+++     A  K S      +++   +  Q    + DE     S +K
Sbjct: 18  SLLLASVPLCAQANDVQQKLAALEKSSGGRLGVALINTADNTQTLY-RADERFAMCSTSK 76

Query: 83  MMTLYIIFEYLQSKKLHLNTQIPV--SKTAATQNPSKLYLKEKTYFTTEQGILALITRSA 140
           +M    + +  +++K  L+ ++ +  S        ++ ++      T  + I A +  S 
Sbjct: 77  VMAAAAVLKQSETQKGLLSQRVEIKPSDLVNYNPIAEKHV--NGTMTFGELIAAALQYSD 134

Query: 141 NDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
           N         + G +K   FA  + +   ++
Sbjct: 135 NTAMNKLIAHLGGPDKVTAFARTIGDDTFRL 165


>gi|37595775|ref|NP_932193.1| BlaZ [Staphylococcus aureus]
 gi|57854755|ref|YP_187532.1| beta-lactamase [Staphylococcus epidermidis RP62A]
 gi|258445835|ref|ZP_05694012.1| beta-lactamase [Staphylococcus aureus A6300]
 gi|282875039|ref|ZP_06283913.1| beta-lactamase [Staphylococcus epidermidis SK135]
 gi|537341|gb|AAA26647.1| beta-lactamase [Staphylococcus aureus]
 gi|11230703|emb|CAC16665.1| beta-lactamase [Staphylococcus haemolyticus]
 gi|35186913|gb|AAQ84127.1| BlaZ [Staphylococcus aureus]
 gi|57635988|gb|AAW52777.1| beta-lactamase [Staphylococcus epidermidis RP62A]
 gi|257855411|gb|EEV78349.1| beta-lactamase [Staphylococcus aureus A6300]
 gi|281296178|gb|EFA88698.1| beta-lactamase [Staphylococcus epidermidis SK135]
 gi|281334356|gb|ADA61440.1| Beta-lactamase [Staphylococcus epidermidis]
          Length = 281

 Score = 36.4 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 56/154 (36%), Gaps = 14/154 (9%)

Query: 24  IQRNIQLMGKILFLSIIMI--SMASELHA-----KPKYSSIVIDVNKNQMTGFKQDEPRY 76
           +++ I L+   L LS      S A EL+              +D    +   F  D+   
Sbjct: 1   MKKLIFLIAIALVLSACNSNSSHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS +K +   I+ E +   K  LN +I ++K         L        T ++ I A +
Sbjct: 61  YASTSKAINSAILLEQVPYNK--LNKKIHINKDDIVAYSPILEKYVGKDITLKELIEASM 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             S N  +    + I G        +  + K++G
Sbjct: 119 AYSDNTANNKIIKEIGG-----IKKVKQRLKELG 147


>gi|254463746|ref|ZP_05077157.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Rhodobacterales bacterium Y4I]
 gi|206684654|gb|EDZ45136.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Rhodobacterales bacterium Y4I]
          Length = 494

 Score = 36.4 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 58 VIDVNKNQMTGFKQD-EPRYPASLTKMMTLYIIFE 91
          V DV   ++       E   PAS+ K +T     +
Sbjct: 63 VADVKTGKLLEASGSGEALPPASVAKALTALYALD 97


>gi|86749825|ref|YP_486321.1| Beta-lactamase [Rhodopseudomonas palustris HaA2]
 gi|86572853|gb|ABD07410.1| Beta-lactamase [Rhodopseudomonas palustris HaA2]
          Length = 436

 Score = 36.4 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLK 121
           S+TK +T  +    +   KL L+   PVSK        ++ ++
Sbjct: 107 SMTKPITSVVAMMLIDDGKLSLDD--PVSKFIPAFAGVRVGIE 147


>gi|316935225|ref|YP_004110207.1| beta-lactamase [Rhodopseudomonas palustris DX-1]
 gi|315602939|gb|ADU45474.1| beta-lactamase [Rhodopseudomonas palustris DX-1]
          Length = 426

 Score = 36.4 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEK 123
           ASLTK  T + +   +   K+ L+   PVSK       +K+ +++K
Sbjct: 96  ASLTKPFTAFAVMTLVDDGKIKLDD--PVSKYIPAFADTKVGVEKK 139


>gi|192290195|ref|YP_001990800.1| beta-lactamase [Rhodopseudomonas palustris TIE-1]
 gi|192283944|gb|ACF00325.1| beta-lactamase [Rhodopseudomonas palustris TIE-1]
          Length = 426

 Score = 36.4 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEK 123
           ASLTK  T + +   +   K+ L+   PVSK       +K+ +++K
Sbjct: 96  ASLTKPFTAFAVMTLVDDGKIKLDD--PVSKYIPAFADTKVGVEKK 139


>gi|39934678|ref|NP_946954.1| beta-lactamase [Rhodopseudomonas palustris CGA009]
 gi|39648528|emb|CAE27049.1| Beta-lactamase [Rhodopseudomonas palustris CGA009]
          Length = 426

 Score = 36.4 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEK 123
           ASLTK  T + +   +   K+ L+   PVSK       +K+ +++K
Sbjct: 96  ASLTKPFTAFAVMTLVDDGKIKLDD--PVSKYIPAFADTKVGVEKK 139


>gi|281335994|gb|ADA62554.1| CTX-M-1-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 36.4 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|167644962|ref|YP_001682625.1| beta-lactamase [Caulobacter sp. K31]
 gi|167347392|gb|ABZ70127.1| Beta-lactamase [Caulobacter sp. K31]
          Length = 304

 Score = 36.4 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 2/113 (1%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           V+D    +   ++ DE     S  K +    + + +   K  L+ +I   K     +   
Sbjct: 54  VLDTAGGKAFAYRGDERFAMCSTFKALIAGFVLKRVDQGKERLDRRITYGKGVLLAHSPA 113

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKK 168
                    T  +   A IT S N  +        G      F   + +K  +
Sbjct: 114 TEKHVGDGMTVGELCEATITLSDNAAANLLLRTFGGPPALTAFLRGLGDKVTR 166


>gi|291445686|ref|ZP_06585076.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces roseosporus NRRL
           15998]
 gi|291348633|gb|EFE75537.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces roseosporus NRRL
           15998]
          Length = 458

 Score = 36.4 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 8/72 (11%)

Query: 127 TTEQGILALITRSANDVSTAFGEFIS---GSEKKFAILMSNKAKKIG-----MQNTIYKN 178
             +  +   +T S ND++ A     +   G    FA        ++      M    + +
Sbjct: 283 PLDALVERTLTNSDNDIAEALARQTAIAKGESASFAGARRAVTNELKKLKVPMAGAHFAD 342

Query: 179 ASGLHDKNQITT 190
            SGL  K+++T 
Sbjct: 343 GSGLDRKDRVTP 354


>gi|283455475|ref|YP_003360039.1| hypothetical protein BDP_0546 [Bifidobacterium dentium Bd1]
 gi|283102109|gb|ADB09215.1| Conserved hypothetical secreted protein with D-Ala-D-Ala
           carboxypeptidase 3 (S13) domain [Bifidobacterium dentium
           Bd1]
          Length = 481

 Score = 36.4 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 5/100 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSK-----KLHLNTQIPVS 107
            YS  + D     +     DE R PAS  K +T Y +   L        + ++  +   +
Sbjct: 99  DYSIAIADAKGEVVAESGIDETRVPASTMKTLTAYAVATTLDMGSTLATQTYVEQKQDGT 158

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
                     + L      +      A +   A+D + A 
Sbjct: 159 ANLVLVGGGDMLLGAGNSDSAHVNGRAGLGTLASDTARAL 198


>gi|271961641|ref|YP_003335837.1| alkaline D-peptidase [Streptosporangium roseum DSM 43021]
 gi|270504816|gb|ACZ83094.1| alkaline D-peptidase [Streptosporangium roseum DSM 43021]
          Length = 392

 Score = 36.4 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 9/128 (7%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114
           S+   D    +    +  E     S TK  T  ++ +    +KL L   +          
Sbjct: 69  SAGAADTETGR--KRRPHERFRIGSATKAFTATVVLQLAAERKLSLEDTV----EEWLPG 122

Query: 115 PSKLYLKEKTYFTTEQGIL---ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
             K    + +  T  Q +     +     +    A G+  +  E ++      +  KIG+
Sbjct: 123 LVKGNGYDGSKITIRQLLNHSSGIFNYGNDKAFFATGQGAAWFEHRYDEYTPEQLVKIGL 182

Query: 172 QNTIYKNA 179
            N  Y   
Sbjct: 183 ANPPYFEP 190


>gi|225571345|ref|ZP_03780341.1| hypothetical protein CLOHYLEM_07443 [Clostridium hylemonae DSM
           15053]
 gi|225159821|gb|EEG72440.1| hypothetical protein CLOHYLEM_07443 [Clostridium hylemonae DSM
           15053]
          Length = 307

 Score = 36.4 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 46/137 (33%), Gaps = 26/137 (18%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130
            ++P   ASL K+     + E  +  +             A  + S+          T+ 
Sbjct: 104 NNKPMQSASLIKLFIAAAVLEQKEKAE-------------AQGSGSE----------TDA 140

Query: 131 GILALITRSANDVSTAFGEFI-SGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD--KNQ 187
            + A+IT S N+ +    + + +G        ++  A   G  +T         D   + 
Sbjct: 141 LLKAMITVSDNEAANTLVKRLGAGDAAAGMNAVNTFAAAHGFADTHMGRLMLDFDAQDDN 200

Query: 188 ITTARDQAILGILLRKN 204
            T+ +D  I    L + 
Sbjct: 201 YTSVKDCGIFLQRLYRQ 217


>gi|182419629|ref|ZP_02950874.1| beta-lactamase [Clostridium butyricum 5521]
 gi|237665951|ref|ZP_04525939.1| beta-lactamase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376519|gb|EDT74096.1| beta-lactamase [Clostridium butyricum 5521]
 gi|237658898|gb|EEP56450.1| beta-lactamase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 658

 Score = 36.4 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 70  KQDEPRYPA-SLTKMMTLYIIFEYLQSKKLHLNTQI 104
             DE  +PA S++K+ T   I +  +  K+ L+T +
Sbjct: 106 NPDETIFPAGSVSKLFTATAILQLYEEGKIDLDTNV 141


>gi|322412926|gb|EFY03833.1| hypothetical protein SDD27957_00070 [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 428

 Score = 36.4 bits (83), Expect = 6.8,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 54  YSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA--- 110
           YS  V +++     G   D+  Y AS+ K+  LY + + LQ KK+  N  +         
Sbjct: 206 YSIFVKELDTQASAGINADKEMYAASIAKLAPLYSVQKQLQEKKVTENKLLRYIDDVNHF 265

Query: 111 -ATQNPSKLY----LKEKTYFTTEQGILALITRSANDVSTAFGEFIS-GSEKKFAILMSN 164
               +PS         +K  +     + A+   S N  +   G ++    ++ F   + +
Sbjct: 266 YGDYDPSGSGKISKKADKEDYKVSTLLKAVAQNSDNVATNILGYYLCHQYDQAFQTEIKS 325

Query: 165 KA 166
            A
Sbjct: 326 LA 327


>gi|124008674|ref|ZP_01693364.1| beta-lactamase [Microscilla marina ATCC 23134]
 gi|123985750|gb|EAY25623.1| beta-lactamase [Microscilla marina ATCC 23134]
          Length = 401

 Score = 36.4 bits (83), Expect = 6.8,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           AS+TK +T   + +     KL L+  +
Sbjct: 85  ASITKTLTSVAVMQLRDQGKLKLDDPV 111


>gi|110630023|gb|ABG80523.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|113374282|gb|ABI34705.1| extended-spectrum beta-lactamase [Escherichia coli]
 gi|156447585|gb|ABU63585.1| beta-lactamase CTX-M-57 [Shigella sonnei]
 gi|164665318|gb|ABY66121.1| CTX-m-15-like beta-lactamase [Escherichia coli]
 gi|256576424|gb|ACU87986.1| extended-spectrum beta-lactamase CTX-M-55 [Escherichia coli]
 gi|256576428|gb|ACU87988.1| extended-spectrum beta-lactamase CTX-M-55 [Escherichia coli]
 gi|256576432|gb|ACU87990.1| extended-spectrum beta-lactamase CTX-M-55 [Escherichia coli]
 gi|282192942|gb|ADA81874.1| extended-spectrum beta-lactamase [Escherichia coli]
 gi|302347801|gb|ADL27910.1| beta-lactamase CTX-M-55 [Escherichia coli]
          Length = 291

 Score = 36.4 bits (83), Expect = 6.8,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|281336012|gb|ADA62563.1| CTX-M-3-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 36.4 bits (83), Expect = 6.8,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|281336008|gb|ADA62561.1| CTX-M-1 group beta-lactamase [synthetic construct]
          Length = 291

 Score = 36.4 bits (83), Expect = 6.8,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|281335936|gb|ADA62525.1| CTX-M-52-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 36.4 bits (83), Expect = 6.8,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|254388636|ref|ZP_05003869.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
 gi|197702356|gb|EDY48168.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
           27064]
          Length = 455

 Score = 36.4 bits (83), Expect = 6.8,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 9/90 (10%)

Query: 55  SSIVIDVNKN-QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+ V+D     Q+ G     P  PAS  K+ T            L  + +IP   TA T 
Sbjct: 96  SASVVDTATGRQLYGTDAARPMTPASTIKIATTVAALHA-----LGPDHRIP---TAVTA 147

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDV 143
              +L L      +  +  L  +       
Sbjct: 148 AGDRLTLVGGGDASLTRAGLRTLAERTARA 177


>gi|238757885|ref|ZP_04619067.1| Penicillin-binding protein ampH [Yersinia aldovae ATCC 35236]
 gi|238703870|gb|EEP96405.1| Penicillin-binding protein ampH [Yersinia aldovae ATCC 35236]
          Length = 380

 Score = 36.4 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           + D     AS+TK+MT  I+ +      + L   +
Sbjct: 80  RPDSLIRIASITKLMTSEIMVKLADDGTVKLTDPL 114


>gi|166850618|gb|ABY91281.1| extended-spectrum beta-lactamase CTX-M-69 [Escherichia coli]
          Length = 291

 Score = 36.4 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|126256518|gb|ABO09821.1| extended-spectrum beta-lactamase [Escherichia coli]
 gi|205362238|gb|ACI03938.1| CTX-M-79 beta-lactamase [Escherichia coli]
 gi|281335920|gb|ADA62517.1| CTX-M-79 beta-lactamase [synthetic construct]
          Length = 291

 Score = 36.4 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|306828568|ref|ZP_07461763.1| penicillin-binding protein 1B [Streptococcus mitis ATCC 6249]
 gi|304429367|gb|EFM32452.1| penicillin-binding protein 1B [Streptococcus mitis ATCC 6249]
          Length = 831

 Score = 36.4 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 14/68 (20%)

Query: 43  SMASELHAKPKYSSIVIDVNKNQMTGF----------KQ---DEPRYPASLTKMMTLY-I 88
           S+  +   +P+  ++++D     + GF               D  R PAS TK +  Y I
Sbjct: 413 SLVDDSTGQPEVGNVLMDNQTGAILGFVGGRNYQENQNNHAIDTKRSPASTTKPILAYGI 472

Query: 89  IFEYLQSK 96
             +     
Sbjct: 473 AIDQGLMG 480


>gi|281335986|gb|ADA62550.1| CTX-M-1 group beta-lactamase [synthetic construct]
          Length = 291

 Score = 36.4 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRL 165


>gi|171741156|ref|ZP_02916963.1| hypothetical protein BIFDEN_00223 [Bifidobacterium dentium ATCC
           27678]
 gi|171276770|gb|EDT44431.1| hypothetical protein BIFDEN_00223 [Bifidobacterium dentium ATCC
           27678]
          Length = 459

 Score = 36.4 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 5/100 (5%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSK-----KLHLNTQIPVS 107
            YS  + D     +     DE R PAS  K +T Y +   L        + ++  +   +
Sbjct: 77  DYSIAIADAKGEVVAESGIDETRVPASTMKTLTAYAVATTLDMGSTLATQTYVEQKQDGT 136

Query: 108 KTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAF 147
                     + L      +      A +   A+D + A 
Sbjct: 137 ANLVLVGGGDMLLGAGNSDSAHVNGRAGLGTLASDTARAL 176


>gi|297197405|ref|ZP_06914802.1| beta-lactamase [Streptomyces sviceus ATCC 29083]
 gi|297146712|gb|EFH28300.1| beta-lactamase [Streptomyces sviceus ATCC 29083]
          Length = 397

 Score = 36.4 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           + ++ V D    +       +     S+TK  T  ++ + +  KKL L+  +
Sbjct: 61  QAAAGVADRGNGR--AMSDADRFRIGSVTKTFTAVVLLQLVDEKKLSLDAPV 110


>gi|257467918|ref|ZP_05632014.1| beta-lactamase [Fusobacterium ulcerans ATCC 49185]
 gi|317062206|ref|ZP_07926691.1| beta-lactamase [Fusobacterium ulcerans ATCC 49185]
 gi|313687882|gb|EFS24717.1| beta-lactamase [Fusobacterium ulcerans ATCC 49185]
          Length = 241

 Score = 36.4 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 51/153 (33%), Gaps = 26/153 (16%)

Query: 62  NKNQMTGFKQDEPRYPASLTKMMTLYIIF---EYLQSKKLHLNTQIPVSKTAATQNPSKL 118
           +  +M    ++     AS+ K+  + +     EY +  +L    ++             +
Sbjct: 23  SSGKMITINEEVVFPSASIIKLF-ILMALNKDEYNKKIELKKEDKV---------GGCGI 72

Query: 119 Y--LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT-- 174
              + +    T +     +I  S N  +    ++I          ++   K+ G   T  
Sbjct: 73  LKVMGDGLPLTVKDAAYLMICLSDNTATNILIDYIG------MDKINECIKEKGFTGTVL 126

Query: 175 --IYKNASG-LHDKNQITTARDQAILGILLRKN 204
                +A      K+  TT +D   +  +L +N
Sbjct: 127 GRKMMDAEARKAGKDNFTTPKDVLGVLEMLCEN 159


>gi|294813248|ref|ZP_06771891.1| Putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           clavuligerus ATCC 27064]
 gi|326441642|ref|ZP_08216376.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Streptomyces clavuligerus ATCC 27064]
 gi|294325847|gb|EFG07490.1| Putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 470

 Score = 36.4 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 9/90 (10%)

Query: 55  SSIVIDVNKN-QMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
           S+ V+D     Q+ G     P  PAS  K+ T            L  + +IP   TA T 
Sbjct: 111 SASVVDTATGRQLYGTDAARPMTPASTIKIATTVAALHA-----LGPDHRIP---TAVTA 162

Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDV 143
              +L L      +  +  L  +       
Sbjct: 163 AGDRLTLVGGGDASLTRAGLRTLAERTARA 192


>gi|170737715|ref|YP_001778975.1| Beta-lactamase [Burkholderia cenocepacia MC0-3]
 gi|169819903|gb|ACA94485.1| Beta-lactamase [Burkholderia cenocepacia MC0-3]
          Length = 312

 Score = 36.4 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 51/138 (36%), Gaps = 6/138 (4%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTK-MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
            ID    ++   +  E     S  K M++  ++ + ++   L L  ++  +K A   N S
Sbjct: 72  AIDTASGRVIEHRAGERFPFCSTFKAMLSAAVLAQSVERPGL-LQQRVTYTK-ADLVNYS 129

Query: 117 KLYLK-EKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKIGMQN 173
            +  K   +  T      A I  S N  +    + I G  +   +A  + + A ++    
Sbjct: 130 PVSEKHVGSGMTVAALCEAAIQYSDNSAANLLMKLIGGPSAVTAYARSIGDDAFRLDRWE 189

Query: 174 TIYKNASGLHDKNQITTA 191
           T    A     ++  T A
Sbjct: 190 TELNTALPGDPRDTTTPA 207


>gi|281335948|gb|ADA62531.1| CTX-M-22-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 36.4 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|284039729|ref|YP_003389659.1| beta-lactamase [Spirosoma linguale DSM 74]
 gi|283819022|gb|ADB40860.1| beta-lactamase [Spirosoma linguale DSM 74]
          Length = 497

 Score = 36.4 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           AS TK MT+ ++   +   K+  +  +
Sbjct: 82  ASTTKAMTVALMGMLVDEGKIAWDDPV 108


>gi|324523636|gb|ADY48276.1| Serine beta-lactamase-like protein LACTB [Ascaris suum]
          Length = 162

 Score = 36.4 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 57  IVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           I+ DV   QM     D     AS++K +T  I    +Q+ KL+L+T +
Sbjct: 7   IIADVE--QMVPCTADTVMRIASISKSITATIAARLVQNGKLNLDTNV 52


>gi|124005828|ref|ZP_01690666.1| protein flp [Microscilla marina ATCC 23134]
 gi|123988511|gb|EAY28152.1| protein flp [Microscilla marina ATCC 23134]
          Length = 516

 Score = 36.4 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 16/65 (24%)

Query: 52  PKYSSIVIDVNKNQMTGFK----QDEPR----------YPASLTKMMTLYIIFEYLQSKK 97
           P  S+ V+  +  ++   K     D  R          + ASLTK  T  I+ +  Q+ K
Sbjct: 61  PGMSAGVV--HNGELVWSKGFGYADILRKVKVTPQTIFHIASLTKTFTAAIVLKLEQAGK 118

Query: 98  LHLNT 102
           L L  
Sbjct: 119 LKLTD 123


>gi|23098817|ref|NP_692283.1| penicillin binding protein [Oceanobacillus iheyensis HTE831]
 gi|22777044|dbj|BAC13318.1| penicillin binding protein [Oceanobacillus iheyensis HTE831]
          Length = 459

 Score = 36.4 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 1/37 (2%)

Query: 61 VNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSK 96
           +   +      D   +PAS  K++T     + L   
Sbjct: 29 ADTGDIYFSHNGDIRLHPASNMKILTAVAALKILGPG 65


>gi|281335958|gb|ADA62536.1| CTX-M-52-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 36.4 bits (83), Expect = 7.2,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|260101539|ref|ZP_05751776.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|260084682|gb|EEW68802.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
          Length = 388

 Score = 36.4 bits (83), Expect = 7.2,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 9/63 (14%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE 129
           K D+    ASL K+MT   I++  + K+L  NT  P+SK       SK         T  
Sbjct: 122 KTDQLFPIASLQKIMTGTAIYQLQKQKQLDWNT--PLSKYFPQVPGSK-------SITIR 172

Query: 130 QGI 132
           + +
Sbjct: 173 ELM 175


>gi|258453344|ref|ZP_05701329.1| beta-lactamase [Staphylococcus aureus A5937]
 gi|257864552|gb|EEV87295.1| beta-lactamase [Staphylococcus aureus A5937]
 gi|281334684|gb|ADA61768.1| Beta-lactamase [Staphylococcus epidermidis]
          Length = 281

 Score = 36.4 bits (83), Expect = 7.2,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 16/140 (11%)

Query: 31  MGKILFLSIIMISMAS----ELHAK----------PKYSSIVIDVNKNQMTGFKQDEPRY 76
           M K++FL  I + +++      HAK                 +D    +   F  D+   
Sbjct: 1   MKKLIFLIAIALVLSACNSNSPHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS +K +   I+ E +   K  LN +I ++K         L        T ++ I A +
Sbjct: 61  YASTSKAINSAILLEQVPYNK--LNKKIHINKDDIVAYSPILEKYVGKDITLKELIEASM 118

Query: 137 TRSANDVSTAFGEFISGSEK 156
           T S N  +    + I G++K
Sbjct: 119 TYSDNTANNKIIKEIGGNKK 138


>gi|311067078|ref|YP_003972001.1| penicillin-binding protein [Bacillus atrophaeus 1942]
 gi|310867595|gb|ADP31070.1| penicillin-binding protein [Bacillus atrophaeus 1942]
          Length = 669

 Score = 36.0 bits (82), Expect = 7.3,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 16/35 (45%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
            ++     AS++K  T   + + +   KL L+  +
Sbjct: 102 NKETVFQIASVSKTFTALAVMQQVDKGKLKLDQDV 136


>gi|281335976|gb|ADA62545.1| CTX-M-79-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 36.0 bits (82), Expect = 7.5,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|78057322|gb|ABB17185.1| CTX-M-52 beta-lactamase [Klebsiella pneumoniae]
 gi|281335922|gb|ADA62518.1| CTX-M-52 beta-lactamase [synthetic construct]
          Length = 291

 Score = 36.0 bits (82), Expect = 7.5,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|218232699|ref|YP_002367912.1| beta-lactamase [Bacillus cereus B4264]
 gi|218160656|gb|ACK60648.1| beta-lactamase [Bacillus cereus B4264]
          Length = 389

 Score = 36.0 bits (82), Expect = 7.5,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 53  KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
            Y++ V D++  +    K D      S+TK  T  ++ +     +L+L+  I 
Sbjct: 81  SYAAGVADLSTKK--PMKTDFRFRIGSVTKTFTAIVVLQLAGENRLNLDDSIE 131


>gi|300312646|ref|YP_003776738.1| beta-lactamase class A protein [Herbaspirillum seropedicae SmR1]
 gi|300075431|gb|ADJ64830.1| beta-lactamase class A protein [Herbaspirillum seropedicae SmR1]
          Length = 299

 Score = 36.0 bits (82), Expect = 7.6,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 37/122 (30%), Gaps = 17/122 (13%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN--------TQIPVSKT 109
           ++D    +  G++ DE     S  K +    +   +   +  L           +P S T
Sbjct: 58  LLDTASGRHWGYRADERFPMCSTFKFLAAAAVLRRVDQGQEQLTRRIVYQKQDLVPYSPT 117

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAK 167
                            +  Q   A +T S N  +      + G     +F   + ++  
Sbjct: 118 TGKHTG-------GAGLSMAQLCEAAMTLSDNTAANLMLASMGGPAGLTRFVRTLGDELT 170

Query: 168 KI 169
           ++
Sbjct: 171 RL 172


>gi|118490306|gb|ABK96857.1| beta-lactamase [Staphylococcus intermedius]
          Length = 266

 Score = 36.0 bits (82), Expect = 7.6,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 17/152 (11%)

Query: 29  QLMGKILFLSIIMISMASELHAK----------PKYSSIVIDVNKNQMTGFKQDEPRYPA 78
           +L+  I+   ++    ++  HAK                 +D    +   F  D+    A
Sbjct: 1   KLIFLIVIALVLSACNSNSSHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFAYA 60

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITR 138
           S +K +   I+ E +   K  LN ++ ++K         L        T +  I A +T 
Sbjct: 61  STSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKVITLKALIEASMTY 118

Query: 139 SANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           S N  +    + I G        +  + K++G
Sbjct: 119 SDNTANNKIIKEIGG-----IKKVKQRLKELG 145


>gi|281335908|gb|ADA62511.1| CTX-M-52-derivative beta-lactamase [synthetic construct]
          Length = 291

 Score = 36.0 bits (82), Expect = 7.7,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPSKLY 119
            + +Q+   + DE     S +K+M +  + +  +S+   LN ++ + K+     NP    
Sbjct: 56  ADNSQILY-RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEK 114

Query: 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
               T  +  +   A +  S N         + G  S   FA  + ++  ++
Sbjct: 115 HVNGT-MSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRL 165


>gi|284007682|emb|CBA73418.1| beta-lactamase/D-alanine carboxypeptidase [Arsenophonus nasoniae]
          Length = 430

 Score = 36.0 bits (82), Expect = 7.8,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           D     ASLTK+MT  ++ +    KKL +   +
Sbjct: 105 DSLIRIASLTKLMTSEVMIKLEADKKLRITDPL 137


>gi|67973183|gb|AAY84127.1| beta-lactamase [Staphylococcus haemolyticus]
          Length = 182

 Score = 36.0 bits (82), Expect = 7.8,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 14/154 (9%)

Query: 24  IQRNIQLMGKILFLSIIMISMAS-------ELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           +++ I L+   L LS      +        E           +D    +   F  D+   
Sbjct: 1   MKKLIXLIXXALVLSACNSXSSHXKELNXLEKKYNAXIGVYALDTKSGKEVKFNSDKRFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS +K +   I+ E +   K  LN ++ ++K         L        T ++ I A +
Sbjct: 61  YASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITLKELIEASM 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           T S N  +    + I G        +  + K++G
Sbjct: 119 TYSDNTANNKIIKEIGG-----IKKVKQRLKELG 147


>gi|116617571|ref|YP_817942.1| Beta-lactamase class C related penicillin binding protein
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116096418|gb|ABJ61569.1| Beta-lactamase class C related penicillin binding protein
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 380

 Score = 36.0 bits (82), Expect = 7.8,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 13/66 (19%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQ-------------IPVSKTAATQNPSKLYLKEKT 124
           AS+ K MT  +I + ++S KL  +T+             I +S      +     ++  T
Sbjct: 117 ASIEKSMTAVLIMQQIESGKLSFDTKLSDYYPNVVNANRITISDLITMTSGLSQRIQPTT 176

Query: 125 YFTTEQ 130
           + + E 
Sbjct: 177 FESEED 182


>gi|91974735|ref|YP_567394.1| beta-lactamase [Rhodopseudomonas palustris BisB5]
 gi|91681191|gb|ABE37493.1| beta-lactamase [Rhodopseudomonas palustris BisB5]
          Length = 395

 Score = 36.0 bits (82), Expect = 7.9,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 72  DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           D   + AS+TK +T     + ++  KL L+  I
Sbjct: 53  DSVFWIASMTKAITSAAAMQLVEQGKLSLDEPI 85


>gi|329948197|ref|ZP_08295069.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328522930|gb|EGF50035.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 470

 Score = 36.0 bits (82), Expect = 8.0,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 44/149 (29%), Gaps = 13/149 (8%)

Query: 32  GKILFLSIIMISMASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIF 90
            K    S +    +    A    ++ V+DV   + +          PAS  K++T +   
Sbjct: 70  SKAALTSYVQAVASDAALAGGGVTASVVDVATGEELLDQHAATGVTPASTNKLLTAWAAL 129

Query: 91  EYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEF 150
             +          +   +T        + L E     T     A +     D++ A  E 
Sbjct: 130 SSMGPGHTLQTKTVLDGQTLTLVGGGDVLLAEDAGDPTATVGHAGL----GDLARATAEQ 185

Query: 151 ISGSEKKFAILMSNKAKKIGMQNTIYKNA 179
           +              +  + + +T++   
Sbjct: 186 L--------KAQGATSVSLRLDDTLFTGP 206


>gi|328466439|gb|EGF37583.1| putative penicillin-binding protein [Lactobacillus helveticus MTCC
           5463]
          Length = 318

 Score = 36.0 bits (82), Expect = 8.2,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 9/63 (14%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE 129
           K D+    ASL K+MT   I++  + K+L  NT  P+SK       SK         T  
Sbjct: 52  KTDQLFPIASLQKIMTGTAIYQLQKQKQLDWNT--PLSKYFPQVPGSK-------SITIR 102

Query: 130 QGI 132
           + +
Sbjct: 103 ELM 105


>gi|269793742|ref|YP_003313197.1| hypothetical protein Sked_03960 [Sanguibacter keddieii DSM 10542]
 gi|269095927|gb|ACZ20363.1| hypothetical protein Sked_03960 [Sanguibacter keddieii DSM 10542]
          Length = 453

 Score = 36.0 bits (82), Expect = 8.2,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 7/73 (9%)

Query: 79  SLTKMMTLYI---IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKE-KTYFTTEQGILA 134
           S+ K+   Y+   +   +    L  +T + ++    +     L  +   +  T EQ   A
Sbjct: 195 SIVKI---YVLGAVVTAVGDGSLTWDTDLTLTDDVKSLPSGTLQDQPSGSTVTVEQAATA 251

Query: 135 LITRSANDVSTAF 147
           +I+ S N  +   
Sbjct: 252 MISISDNTATDLL 264


>gi|154299823|ref|XP_001550329.1| hypothetical protein BC1G_10802 [Botryotinia fuckeliana B05.10]
 gi|150857082|gb|EDN32274.1| hypothetical protein BC1G_10802 [Botryotinia fuckeliana B05.10]
          Length = 320

 Score = 36.0 bits (82), Expect = 8.2,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           K D   + AS TK++T     + ++  +  L+  +
Sbjct: 51  KADAIFWIASCTKLLTSISALQCVERGQFTLDEDV 85


>gi|85002773|gb|ABC68520.1| PER-1 [Acinetobacter baumannii]
          Length = 262

 Score = 36.0 bits (82), Expect = 8.2,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 13/151 (8%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK--LYLKEKTYFT--T 128
           E     S+ K+    ++   +   KL LN  + V++    QN     +   +   F+   
Sbjct: 58  EKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFSVPV 117

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK---NASGLHDK 185
           +Q +   ++ S N       E + G        + +  + +G++ T            D+
Sbjct: 118 QQLLQYSVSHSDNVACDLLFELVGGP-----AALHDYIQSMGIKETAVVANEAQMHADDQ 172

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRK 216
            Q             + K F Q  +     +
Sbjct: 173 VQYQNWTSM-KGAAEILKKFEQKTQLSETSQ 202


>gi|322834554|ref|YP_004214581.1| beta-lactamase [Rahnella sp. Y9602]
 gi|321169755|gb|ADW75454.1| beta-lactamase [Rahnella sp. Y9602]
          Length = 379

 Score = 36.0 bits (82), Expect = 8.3,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 70  KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           ++D     ASLTK++T  ++ +  Q  K+ +N  +
Sbjct: 81  REDSVVRIASLTKLITSEVLVKMAQQGKVSINDPL 115


>gi|319940217|ref|ZP_08014570.1| beta-lactamase class A [Streptococcus anginosus 1_2_62CV]
 gi|319810688|gb|EFW07018.1| beta-lactamase class A [Streptococcus anginosus 1_2_62CV]
          Length = 426

 Score = 36.0 bits (82), Expect = 8.3,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 8/109 (7%)

Query: 51  KPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP----V 106
           K  YS  V  ++  +  G   D   Y AS+ K+  LY   + L   K   ++ +     V
Sbjct: 201 KADYSIYVKQLDSGKTAGINPDLEMYSASVAKLPILYYAQKQLNEGKYKPSSGLKYIPAV 260

Query: 107 SKT--AATQNPSKLYLK--EKTYFTTEQGILALITRSANDVSTAFGEFI 151
           +    A     S    K  +   ++ +  +  +   S N  +   G +I
Sbjct: 261 NDYSGAYDTEGSGSISKKSDNKEYSIQDLMNHIAKESDNAATNILGYYI 309


>gi|242129265|gb|ACS83714.1| Cft2 [uncultured bacterium AOCefta2]
          Length = 606

 Score = 36.0 bits (82), Expect = 8.3,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 89  IFEYLQSKKLHLNTQIPVSKTA---ATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
           + + +++ KL L+ ++ V K+       + S  +      +T +Q +   +  S N    
Sbjct: 392 VLKDVETGKLKLDQKVAVKKSDLSGTAPSSSNRWQNMPVTYTVQQLLEFAMIESDNTAVD 451

Query: 146 AFGEFISG 153
                + G
Sbjct: 452 KLLTLVGG 459


>gi|265752783|ref|ZP_06088352.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Bacteroides sp. 3_1_33FAA]
 gi|263235969|gb|EEZ21464.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Bacteroides sp. 3_1_33FAA]
          Length = 466

 Score = 36.0 bits (82), Expect = 8.3,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 19/78 (24%)

Query: 31 MGKILFLSIIMISMASELHAKP--------------KYSSI---VIDVNKNQMTGFKQDE 73
          M ++LF  ++++S+   ++A+P              K S +   V D+   +     QD+
Sbjct: 1  MKRVLFFFLLILSI-HSINAQPLSQRLDALLHEEVLKTSEVGIAVFDLTAGESVYRYQDD 59

Query: 74 PRY-PASLTKMMTLYIIF 90
            Y PAS+ K++T     
Sbjct: 60 KLYRPASVEKIITSVTAL 77


>gi|163750143|ref|ZP_02157386.1| hypothetical protein KT99_20786 [Shewanella benthica KT99]
 gi|161330200|gb|EDQ01182.1| hypothetical protein KT99_20786 [Shewanella benthica KT99]
          Length = 490

 Score = 36.0 bits (82), Expect = 8.3,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 15/54 (27%)

Query: 63  KNQMTGFKQDEPRY---------------PASLTKMMTLYIIFEYLQSKKLHLN 101
              +   K ++P                  ASL+K +T  +I + + + KL LN
Sbjct: 59  SGSVLLLKNNQPLLTINKGRGISKNTSFVIASLSKQITATLILQAVDAGKLDLN 112


>gi|18129353|emb|CAD20587.1| beta-lactamase class A [Kluyvera ascorbata]
          Length = 291

 Score = 36.0 bits (82), Expect = 8.3,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 4/115 (3%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNPS 116
           +I+   N    ++ DE     S +K+M    + +  +S K  LN ++ + K+     NP 
Sbjct: 52  LINTAGNSHILYRADERFAKCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPI 111

Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
                  T  T  +   A +  S N         + G +K   FA  + ++  ++
Sbjct: 112 AEKHVNGT-MTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRL 165


>gi|315301013|ref|ZP_07872340.1| beta-lactamase,putative [Listeria ivanovii FSL F6-596]
 gi|313630617|gb|EFR98423.1| beta-lactamase,putative [Listeria ivanovii FSL F6-596]
          Length = 259

 Score = 36.0 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 4/86 (4%)

Query: 65  QMTGFKQDEPRY-PASLTKMMTLYI-IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKE 122
           QM   + +   Y  AS+ K+  +Y+  FE +   +L L T+I +S  +       + +  
Sbjct: 26  QMLFAENENQLYTAASVIKL-PIYLYFFEKISKGELDLQTEIQLSSDSVVAGAGIIQILP 84

Query: 123 -KTYFTTEQGILALITRSANDVSTAF 147
            K  +  E+ +  +I  S N  +   
Sbjct: 85  QKRTWRLEELLHLMIAISDNTATNQL 110


>gi|296863468|pdb|3HUO|A Chain A, X-Ray Crystallographic Structure Of Ctx-M-9 S70g In
           Complex Benzylpenicillin
 gi|296863469|pdb|3HUO|B Chain B, X-Ray Crystallographic Structure Of Ctx-M-9 S70g In
           Complex Benzylpenicillin
 gi|296863470|pdb|3HVF|A Chain A, X-Ray Crystallographic Structure Of Ctx-M-9 S70g In
           Complex Hydrolyzed Benzylpenicillin
 gi|296863471|pdb|3HVF|B Chain B, X-Ray Crystallographic Structure Of Ctx-M-9 S70g In
           Complex Hydrolyzed Benzylpenicillin
 gi|297342912|pdb|3HLW|A Chain A, Ctx-M-9 S70g In Complex With Cefotaxime
 gi|297342913|pdb|3HLW|B Chain B, Ctx-M-9 S70g In Complex With Cefotaxime
 gi|298508309|pdb|3HRE|A Chain A, X-Ray Crystallographic Structure Of Ctx-M-9 S70g
 gi|298508310|pdb|3HRE|B Chain B, X-Ray Crystallographic Structure Of Ctx-M-9 S70g
          Length = 263

 Score = 36.0 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 6/116 (5%)

Query: 58  VID-VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116
           +ID  +  Q+   + DE       +K+M    + +  +++K  LN  + + K A   N +
Sbjct: 24  LIDTADNTQVLY-RGDERFPMCGTSKVMAAAAVLKQSETQKQLLNQPVEI-KPADLVNYN 81

Query: 117 KLYLK-EKTYFTTEQGILALITRSANDVSTAFGEFIS--GSEKKFAILMSNKAKKI 169
            +  K      T  +   A +  S N         +   G    FA  + ++  ++
Sbjct: 82  PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRL 137


>gi|282853312|ref|ZP_06262649.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Propionibacterium acnes J139]
 gi|282582765|gb|EFB88145.1| D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           [Propionibacterium acnes J139]
          Length = 457

 Score = 36.0 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 9/93 (9%)

Query: 49  HAKPKYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS 107
            A     + ++D    +      Q+    PAS  K++T   + +   +      T++  +
Sbjct: 84  AAPGVLGADIMDAATGETLYQSGQNSLLTPASNLKVLTAIALLDCTDAGH-RYTTKVVAN 142

Query: 108 KTAATQNP-------SKLYLKEKTYFTTEQGIL 133
            +A T          SK   +   Y + E    
Sbjct: 143 GSALTLVGGGDPYLRSKSSAQHPEYPSMEDLAK 175


>gi|227432574|ref|ZP_03914554.1| beta-lactamase class C or other penicillin binding protein
           [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
 gi|227351657|gb|EEJ41903.1| beta-lactamase class C or other penicillin binding protein
           [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
          Length = 380

 Score = 36.0 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 13/66 (19%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQ-------------IPVSKTAATQNPSKLYLKEKT 124
           AS+ K MT  +I + ++S KL  +T+             I +S      +     ++  T
Sbjct: 117 ASIEKSMTAVLIMQQIESGKLSFDTKLSDYYPNVVNANRITISDLITMTSGLSQRIQPTT 176

Query: 125 YFTTEQ 130
           + + E 
Sbjct: 177 FESEED 182


>gi|153838987|ref|ZP_01991654.1| beta-lactamase [Vibrio parahaemolyticus AQ3810]
 gi|149747531|gb|EDM58467.1| beta-lactamase [Vibrio parahaemolyticus AQ3810]
          Length = 283

 Score = 36.0 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 2/114 (1%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
           V D   ++   ++ DE     S  K +    +   + S KL+ N    + +         
Sbjct: 41  VWDTQTDERWDYRGDERFPLMSTFKTLACATMLSDMDSGKLNKNATAKIDERNIVVWSPV 100

Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK--FAILMSNKAKKI 169
           +          E    A +  S N  +      I G +    F   + +KA ++
Sbjct: 101 MDKLAGQSTRIEHACEAAMLMSDNTAANLVLNEIGGPKAVTLFLRSIGDKATRL 154


>gi|306520015|ref|ZP_07406362.1| cell surface protein (putative penicillin-binding protein)
           [Clostridium difficile QCD-32g58]
          Length = 944

 Score = 36.0 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 59  IDVNKNQMTGFKQDEP------RY-PASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           I+++ N     KQD         Y  AS++KM T   + + +   KL+L+T +
Sbjct: 20  IEISGNGGVYSKQDNKNLNKDNMYSIASISKMFTTTAVMKLVDDGKLNLDTPV 72


>gi|58337866|ref|YP_194451.1| penicillin-binding protein [Lactobacillus acidophilus NCFM]
 gi|58255183|gb|AAV43420.1| putative penicillin-binding protein [Lactobacillus acidophilus
           NCFM]
          Length = 343

 Score = 36.0 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 62  NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           NK Q+    Q      ASL K+MT   I++  Q K+++ NT
Sbjct: 71  NKGQIVDENQ--LFPIASLQKIMTGTAIYQLHQKKQINWNT 109


>gi|149372824|ref|ZP_01891845.1| b-glycosidase, glycoside hydrolase family 3 protein [unidentified
           eubacterium SCB49]
 gi|149354521|gb|EDM43086.1| b-glycosidase, glycoside hydrolase family 3 protein [unidentified
           eubacterium SCB49]
          Length = 975

 Score = 36.0 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 16/64 (25%)

Query: 57  IVIDVNKNQMTGFKQ--------------DEPRYPASLTKMM-TLYIIFEYLQSKKLHLN 101
           I++     ++   K               D+    ASLTK++ TL II +      L ++
Sbjct: 609 ILV-ARNGKVVYDKNFGYHTQSQNELVKNDDHYDVASLTKILATLPIIMDLYDRGILTMD 667

Query: 102 TQIP 105
           T++ 
Sbjct: 668 TKLK 671


>gi|315499422|ref|YP_004088225.1| beta-lactamase [Asticcacaulis excentricus CB 48]
 gi|315417434|gb|ADU14074.1| beta-lactamase [Asticcacaulis excentricus CB 48]
          Length = 363

 Score = 36.0 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 78  ASLTKMMTLYIIFEYLQSKKLHLNTQ 103
           ASLTK +T  II   + + KL L+  
Sbjct: 84  ASLTKPLTAEIILRLVSAGKLSLDEP 109


>gi|332668392|ref|YP_004451180.1| beta-lactamase [Haliscomenobacter hydrossis DSM 1100]
 gi|332337206|gb|AEE54307.1| beta-lactamase [Haliscomenobacter hydrossis DSM 1100]
          Length = 438

 Score = 36.0 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 10/52 (19%)

Query: 60  DVNKNQMTGFKQDEPRYPASLTKMMT---LYIIFEYLQSKKLHLNTQIPVSK 108
           DV   +   FK D+    AS++K +T     +++E     K  L+   P+SK
Sbjct: 88  DVQTGR--AFKTDDIFRIASMSKAITATAAMLLYEE---GKFSLDD--PISK 132


>gi|309811301|ref|ZP_07705088.1| Tat pathway signal sequence domain protein [Dermacoccus sp.
           Ellin185]
 gi|308434608|gb|EFP58453.1| Tat pathway signal sequence domain protein [Dermacoccus sp.
           Ellin185]
          Length = 273

 Score = 36.0 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 11/83 (13%)

Query: 121 KEKTYFTTEQGILA--LITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN 178
           K     T  +   A  +I  S N+ +T     + G     A  +   A  +GM +T    
Sbjct: 104 KAGRGLTAWEKSQASPMIRVSDNNAATNLWRSVGG-----APAVQAVANSLGMTSTRAAG 158

Query: 179 ASGLHDKNQITTARDQAILGILL 201
           A GL      T+A DQ +L   +
Sbjct: 159 AWGLT----TTSAYDQIVLMNEI 177


>gi|291445537|ref|ZP_06584927.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces roseosporus
           NRRL 15998]
 gi|291348484|gb|EFE75388.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces roseosporus
           NRRL 15998]
          Length = 407

 Score = 36.0 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           ++ V D +       + D      S+TK  T  ++ + +   +L L+  +
Sbjct: 87  AAGVADRSTGT--PMRPDLKFRAGSITKTFTATVVLQLVAEHRLRLDDTV 134


>gi|239988555|ref|ZP_04709219.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces roseosporus
           NRRL 11379]
          Length = 344

 Score = 36.0 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           ++ V D +       + D      S+TK  T  ++ + +   +L L+  +
Sbjct: 24  AAGVADRSTGT--PMRPDLKFRAGSITKTFTATVVLQLVAEHRLRLDDTV 71


>gi|239942089|ref|ZP_04694026.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces roseosporus
           NRRL 15998]
          Length = 345

 Score = 36.0 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 55  SSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           ++ V D +       + D      S+TK  T  ++ + +   +L L+  +
Sbjct: 25  AAGVADRSTGT--PMRPDLKFRAGSITKTFTATVVLQLVAEHRLRLDDTV 72


>gi|227904516|ref|ZP_04022321.1| penicillin-binding protein [Lactobacillus acidophilus ATCC 4796]
 gi|227867725|gb|EEJ75146.1| penicillin-binding protein [Lactobacillus acidophilus ATCC 4796]
          Length = 316

 Score = 36.0 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 62  NKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNT 102
           NK Q+    Q      ASL K+MT   I++  Q K+++ NT
Sbjct: 44  NKGQIVDENQ--LFPIASLQKIMTGTAIYQLHQKKQINWNT 82


>gi|188988411|gb|ACD67727.1| beta-lactamase PER-5 [Acinetobacter baumannii]
 gi|297166888|gb|ADI16146.1| PER [Acinetobacter baumannii]
          Length = 273

 Score = 36.0 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 76/229 (33%), Gaps = 27/229 (11%)

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK--LYLKEKTYFT--T 128
           E     S+ K+    ++   +   KL LN  + V++    QN     +   +   F+   
Sbjct: 49  EKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFSVPV 108

Query: 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK---NASGLHDK 185
           +Q +   ++ S +       E + G        + +  + +G++ T            D+
Sbjct: 109 QQLLQYSVSHSDSVACDLLFELVGGP-----AALHDYIQSMGIKETAVVANEAQMHADDQ 163

Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRK---FRYRNRIITNHNKLLNKMH------- 235
            Q             + K F Q  +     +   +++     T   +L   +        
Sbjct: 164 VQYQNWTSM-KGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAH 222

Query: 236 --NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQ-ERDQKAL 281
                GIK G T  +  ++   L     P++  V    +++  R  +A+
Sbjct: 223 KTGTSGIKAGKT-AATNDLGIILLPDGRPLLVAVFVKDSAESSRTNEAI 270


>gi|258421126|ref|ZP_05684055.1| beta-lactamase [Staphylococcus aureus A9719]
 gi|297246696|ref|ZP_06930519.1| beta-lactamase [Staphylococcus aureus A8796]
 gi|257842898|gb|EEV67318.1| beta-lactamase [Staphylococcus aureus A9719]
 gi|297176453|gb|EFH35722.1| beta-lactamase [Staphylococcus aureus A8796]
          Length = 281

 Score = 36.0 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 56/154 (36%), Gaps = 21/154 (13%)

Query: 31  MGKILFLSIIMISMAS----ELHAK----------PKYSSIVIDVNKNQMTGFKQDEPRY 76
           M K++FL +I + +++      HAK                 +D    +   F  D+   
Sbjct: 1   MKKLIFLIVIALVLSACNSNSSHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS +K +   I+ E +   K  LN +I ++K         L        T ++ I A +
Sbjct: 61  YASTSKAINSAILLEQVPYNK--LNKKIHINKDDIVAYSPILEKYVGKDITLKELIEASM 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
             S N  +    + I G        +  + K +G
Sbjct: 119 AYSDNTANNKIIKEIGG-----IKKVKQRLKGLG 147


>gi|146276537|ref|YP_001166696.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Rhodobacter sphaeroides ATCC 17025]
 gi|145554778|gb|ABP69391.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Rhodobacter sphaeroides ATCC 17025]
          Length = 485

 Score = 36.0 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)

Query: 63 KNQMTGFKQDEPR-YPASLTKMMTLYIIFEYL 93
            ++   +    R  PAS  K +T     E L
Sbjct: 65 TGELLEARNAALRLPPASTAKAITALYALETL 96


>gi|238898184|ref|YP_002923865.1| beta-lactamase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465943|gb|ACQ67717.1| beta-lactamase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 286

 Score = 36.0 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 55/158 (34%), Gaps = 17/158 (10%)

Query: 27  NIQLMGKILFLSIIMISMASEL----------HAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           + +L    +F +  + ++A +               +   + +D+   Q+    + E R+
Sbjct: 3   SFRLTLISIFAAFSLPALAHQATIDKVKESERQLNARVGYVELDLANGQILNTYRPEERF 62

Query: 77  PA-SLTKMMTLYIIFEYLQSKKLHLNTQIPV--SKTAATQNPSKLYLKEKTYFTTEQGIL 133
           P  S  K++    +   + +    L+ +I    S        +K +L +    T  +   
Sbjct: 63  PMMSTFKVLLCGAVLSRVDAGLEQLDRRIKYRQSDLVKYSPMTKQHLADG--MTVAELCS 120

Query: 134 ALITRSANDVSTAFGEFISG--SEKKFAILMSNKAKKI 169
           A IT S N  +      I G      F     ++  ++
Sbjct: 121 AAITVSDNTAANLLLSTIGGPKGLTSFLQKTGDQVTRL 158


>gi|227537155|ref|ZP_03967204.1| possible beta-lactamase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227243086|gb|EEI93101.1| possible beta-lactamase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 535

 Score = 36.0 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 56/163 (34%), Gaps = 41/163 (25%)

Query: 79  SLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY--LKEKTYFTTEQ-GILAL 135
           S TK+ T  +I +  +  KL L+ ++           SK +  L E      E       
Sbjct: 78  STTKIFTSTVILKLAEQGKLSLSDKL-----------SKYFPGLPEGDQINIENLLNHTS 126

Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195
               A+D           +E+ F   +S K          +   +G +  N      +  
Sbjct: 127 GIPGADDADYTI------NEETFLPFISGK-------KLDFTPNTGWNYSNS-----NYY 168

Query: 196 ILGILLRK----NFPQYYKYFSIRKFRYRN-----RIITNHNK 229
           +LG ++RK    ++ +    +  +  +  N     + + N NK
Sbjct: 169 LLGYVIRKVSGMDYDKAISTYIFKPLQMTNSGFDLKTLQNENK 211


>gi|261378256|ref|ZP_05982829.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Neisseria cinerea ATCC 14685]
 gi|269145338|gb|EEZ71756.1| D-alanyl-D-alanine
          carboxypeptidase/D-alanyl-D-alanine-endopeptidase
          [Neisseria cinerea ATCC 14685]
          Length = 469

 Score = 36.0 bits (82), Expect = 9.4,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 53 KYSSIVIDVNKNQMTG-FKQDEPRYPASLTKMMTLYIIFE 91
          + +  V +++  ++    + D P  PAS  K++T +  F+
Sbjct: 31 EIAVYVQELDSGKVIIDHRADVPVNPASTMKLITAFTAFK 70


>gi|227968|prf||1714238A beta lactamase mutant S-3P
          Length = 281

 Score = 35.6 bits (81), Expect = 9.5,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 57/154 (37%), Gaps = 21/154 (13%)

Query: 31  MGKILFLSIIMISMAS----ELHAK----------PKYSSIVIDVNKNQMTGFKQDEPRY 76
           M K++FL ++ + +++      HAK                 +D    +   F  D+   
Sbjct: 1   MKKLIFLIVMALVLSACNSNSSHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS +K +   I+ E +   K  LN ++ ++K         L        T +  I A +
Sbjct: 61  YASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKAITLKALIEASM 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           T S N  +    + I G        +  + K++G
Sbjct: 119 TYSDNTANNKIIKEIGG-----IKKVKQRLKELG 147


>gi|255100495|ref|ZP_05329472.1| cell surface protein (putative penicillin-binding protein)
           [Clostridium difficile QCD-63q42]
          Length = 1013

 Score = 35.6 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 59  IDVNKNQMTGFKQDEP------RY-PASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           I+++ N     KQD         Y  AS++KM T   + + +   KL+L+T +
Sbjct: 89  IEISGNGGVYSKQDNKNLNKDNMYSIASISKMFTTTAVMKLVDDGKLNLDTPV 141


>gi|255306436|ref|ZP_05350607.1| cell surface protein (putative penicillin-binding protein)
           [Clostridium difficile ATCC 43255]
          Length = 1013

 Score = 35.6 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 59  IDVNKNQMTGFKQDEP------RY-PASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           I+++ N     KQD         Y  AS++KM T   + + +   KL+L+T +
Sbjct: 89  IEISGNGGVYSKQDNKNLNKDNMYSIASISKMFTTTAVMKLVDDGKLNLDTPV 141


>gi|254975023|ref|ZP_05271495.1| cell surface protein (putative penicillin-binding protein)
           [Clostridium difficile QCD-66c26]
 gi|255092412|ref|ZP_05321890.1| cell surface protein (putative penicillin-binding protein)
           [Clostridium difficile CIP 107932]
 gi|255314151|ref|ZP_05355734.1| cell surface protein (putative penicillin-binding protein)
           [Clostridium difficile QCD-76w55]
 gi|255516829|ref|ZP_05384505.1| cell surface protein (putative penicillin-binding protein)
           [Clostridium difficile QCD-97b34]
 gi|255649930|ref|ZP_05396832.1| cell surface protein (putative penicillin-binding protein)
           [Clostridium difficile QCD-37x79]
 gi|260683085|ref|YP_003214370.1| putative penicillin-binding protein [Clostridium difficile CD196]
 gi|260686683|ref|YP_003217816.1| putative penicillin-binding protein [Clostridium difficile R20291]
 gi|260209248|emb|CBA62549.1| cell surface protein (putative penicillin-binding protein)
           [Clostridium difficile CD196]
 gi|260212699|emb|CBE03784.1| cell surface protein (putative penicillin-binding protein)
           [Clostridium difficile R20291]
          Length = 1013

 Score = 35.6 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 59  IDVNKNQMTGFKQDEP------RY-PASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           I+++ N     KQD         Y  AS++KM T   + + +   KL+L+T +
Sbjct: 89  IEISGNGGVYSKQDNKNLNKDNMYSIASISKMFTTTAVMKLVDDGKLNLDTPV 141


>gi|126699073|ref|YP_001087970.1| putative penicillin-binding protein [Clostridium difficile 630]
 gi|115250510|emb|CAJ68334.1| putative cell surface protein ; putative penicillin-binding protein
           [Clostridium difficile]
          Length = 1007

 Score = 35.6 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 59  IDVNKNQMTGFKQDEP------RY-PASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           I+++ N     KQD         Y  AS++KM T   + + +   KL+L+T +
Sbjct: 89  IEISGNGGVYSKQDNKNLNKDNMYSIASISKMFTTTAVMKLVDDGKLNLDTPV 141


>gi|281334281|gb|ADA61365.1| Beta-lactamase [Staphylococcus aureus]
 gi|304380353|gb|ADM28797.1| Beta-lactamase [Staphylococcus aureus]
 gi|304381921|gb|ADM28838.1| Beta-lactamase [Staphylococcus aureus]
 gi|304381959|gb|ADM28875.1| Beta-lactamase [Staphylococcus aureus]
 gi|304384161|gb|ADM28961.1| Beta-lactamase [Staphylococcus aureus]
 gi|304384509|gb|ADM29003.1| Beta-lactamase [Staphylococcus aureus]
 gi|304386450|gb|ADM29045.1| Beta-lactamase [Staphylococcus aureus]
 gi|304389225|gb|ADM29209.1| Beta-lactamase [Staphylococcus aureus]
          Length = 295

 Score = 35.6 bits (81), Expect = 9.8,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 14/158 (8%)

Query: 20  GSIYIQRNIQLMGKILFLSIIMI--SMASELHA-----KPKYSSIVIDVNKNQMTGFKQD 72
           G   +++ I L+   L LS      S A EL+              ++    +   F  D
Sbjct: 11  GGFILKKLIFLIVIALVLSACNSNSSHAKELNDLEKKYNAHIGVYALNTKSGKEVKFNSD 70

Query: 73  EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132
           +    AS +K +   I+ E +   K  LN ++ ++K         L        T ++ I
Sbjct: 71  KRFAYASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITLKELI 128

Query: 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
            A +T S N  +    + I G        +  + K++G
Sbjct: 129 EASMTYSDNTANNKIIKEIGG-----IKKVKQRLKELG 161


>gi|317054656|ref|YP_004119723.1| SCO-1 carbenicillinase [Escherichia coli]
 gi|6723709|emb|CAB66899.1| hypothetical protein [Klebsiella pneumoniae]
 gi|56691988|emb|CAI35048.1| hypothetical protein [Klebsiella pneumoniae]
 gi|56691995|emb|CAI35057.1| hypothetical protein [Klebsiella pneumoniae]
 gi|118776563|gb|ABL14266.1| beta-lactamase SCO-1 [Escherichia coli]
 gi|119434066|gb|ABL75133.1| SCO-1 [Acinetobacter baumannii]
 gi|168984508|emb|CAP72545.1| beta-lactamase class A SCO-1 [Salmonella enterica subsp. enterica]
 gi|168984515|emb|CAP72553.1| beta-lactamase class A SCO-1 [Salmonella enterica subsp. enterica]
 gi|168984522|emb|CAP72561.1| beta-lactamase class A SCO-1 [Salmonella enterica subsp. enterica]
 gi|284433185|gb|ADB84924.1| SCO-1 carbenicillinase [Escherichia coli]
          Length = 288

 Score = 35.6 bits (81), Expect = 9.8,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 19/94 (20%)

Query: 58  VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQS--------KKLHLNTQIPVSKT 109
           V+D    +    + D+    AS +K +T   + +  QS        KK  L+   PV+  
Sbjct: 50  VLDTGSQRAWFHRADDRFPMASTSKALTCAALLDKGQSFMNKEALIKKADLDEYAPVT-- 107

Query: 110 AATQNPSKLYLKEKTYFTTEQGILALITRSANDV 143
                 S +        +        +  S N  
Sbjct: 108 ------SGI---VGKKVSAADLCSITMRTSDNTA 132


>gi|242373252|ref|ZP_04818826.1| beta-lactamase [Staphylococcus epidermidis M23864:W1]
 gi|291246342|ref|YP_003505728.1| putative beta-lactamase [Staphylococcus simulans bv.
           staphylolyticus]
 gi|291246392|ref|YP_003505777.1| putative beta-lactamase [Staphylococcus simulans bv.
           staphylolyticus]
 gi|242349044|gb|EES40646.1| beta-lactamase [Staphylococcus epidermidis M23864:W1]
 gi|290463873|gb|ADD24860.1| putative beta-lactamase [Staphylococcus simulans bv.
           staphylolyticus]
 gi|290463923|gb|ADD24909.1| putative beta-lactamase [Staphylococcus simulans bv.
           staphylolyticus]
          Length = 281

 Score = 35.6 bits (81), Expect = 9.9,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 55/154 (35%), Gaps = 21/154 (13%)

Query: 31  MGKILFLSIIMISMAS--------------ELHAKPKYSSIVIDVNKNQMTGFKQDEPRY 76
           M K++FL +I + +++              E           +D    +   F  D+   
Sbjct: 1   MKKLIFLIVIALVLSACNSNSSHTKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFA 60

Query: 77  PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALI 136
            AS +K +   I+ E +   K  LN ++ ++K         L        T +  I A +
Sbjct: 61  YASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASM 118

Query: 137 TRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
           T S N  +    + I G        +  + K++G
Sbjct: 119 TYSDNTANNKIIKEIGG-----IKKVKQRLKELG 147


>gi|146291960|ref|YP_001182384.1| beta-lactamase [Shewanella putrefaciens CN-32]
 gi|145563650|gb|ABP74585.1| beta-lactamase [Shewanella putrefaciens CN-32]
          Length = 399

 Score = 35.6 bits (81), Expect = 10.0,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 71  QDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
           QD     ASL+K +T  +  + L   KL LN  +
Sbjct: 97  QDSRFVMASLSKQITATLTLQALDVGKLDLNQML 130


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.153    0.423 

Lambda     K      H
   0.267   0.0468    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,819,232,897
Number of Sequences: 14124377
Number of extensions: 264434566
Number of successful extensions: 731734
Number of sequences better than 10.0: 7075
Number of HSP's better than 10.0 without gapping: 8381
Number of HSP's successfully gapped in prelim test: 3128
Number of HSP's that attempted gapping in prelim test: 702454
Number of HSP's gapped (non-prelim): 12532
length of query: 336
length of database: 4,842,793,630
effective HSP length: 139
effective length of query: 197
effective length of database: 2,879,505,227
effective search space: 567262529719
effective search space used: 567262529719
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 82 (36.0 bits)